sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2F-A9KO-01 10 101715548 101715548 C T DNMBP Silent p.K561K 0.19 TCGA-2F-A9KO-01 10 102822569 102822569 G A KAZALD1 Missense_Mutation p.D74N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-2F-A9KO-01 10 103826020 103826020 C T HPS6 Silent p.S263S 0.12 TCGA-2F-A9KO-01 10 104160055 104160055 G C NFKB2 Silent p.V535V 0.19 TCGA-2F-A9KO-01 10 105200108 105200108 G C PDCD11 Missense_Mutation p.D1404H 0.17 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KO-01 10 118666167 118666167 C T KIAA1598 Missense_Mutation p.R484K 0.28 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KO-01 10 12043694 12043694 C G UPF2 Missense_Mutation p.K545N 0.07 tolerated(0.13) benign(0.337) TCGA-2F-A9KO-01 10 120796783 120796783 G C EIF3A Missense_Mutation p.S1256C 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-2F-A9KO-01 10 124392379 124392379 C G DMBT1 Missense_Mutation p.P1995A 0.30 tolerated(0.08) possibly_damaging(0.779) TCGA-2F-A9KO-01 10 13228197 13228197 T G MCM10 Missense_Mutation p.L379V 0.11 deleterious(0) probably_damaging(0.946) TCGA-2F-A9KO-01 10 135084453 135084453 G A ADAM8 Missense_Mutation p.S499F 0.14 tolerated(0.12) benign(0.003) TCGA-2F-A9KO-01 10 13672265 13672265 G C PRPF18 Missense_Mutation p.L318F 0.10 tolerated(0.12) benign(0.305) TCGA-2F-A9KO-01 10 16981132 16981132 T C CUBN Missense_Mutation p.N1855D 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-2F-A9KO-01 10 18270351 18270351 C T SLC39A12 Silent p.L345L 0.17 TCGA-2F-A9KO-01 10 22896931 22896931 G C PIP4K2A Missense_Mutation p.F88L 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-2F-A9KO-01 10 23408306 23408306 G T MSRB2 Nonsense_Mutation p.E124* 0.13 TCGA-2F-A9KO-01 10 24908758 24908758 G A ARHGAP21 Missense_Mutation p.S689F 0.07 deleterious(0.04) possibly_damaging(0.828) TCGA-2F-A9KO-01 10 25886921 25886921 G A GPR158 Missense_Mutation p.R789K 0.12 tolerated(0.51) benign(0.003) TCGA-2F-A9KO-01 10 30336501 30336501 C T KIAA1462 Missense_Mutation p.E81K 0.10 deleterious(0.02) possibly_damaging(0.901) TCGA-2F-A9KO-01 10 30901759 30901759 C T LYZL2 Missense_Mutation p.M169I 0.24 tolerated(0.44) probably_damaging(0.973) TCGA-2F-A9KO-01 10 32581920 32581920 C G EPC1 Missense_Mutation p.R221P 0.31 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 10 50819021 50819021 G A SLC18A3 Missense_Mutation p.E79K 0.30 tolerated(0.89) benign(0.01) TCGA-2F-A9KO-01 10 5958227 5958227 C T FBXO18 Silent p.F583F 0.11 TCGA-2F-A9KO-01 10 64973898 64973898 T A JMJD1C Missense_Mutation p.I677L 0.16 tolerated_low_confidence(0.27) benign(0.002) TCGA-2F-A9KO-01 10 70411673 70411673 C T TET1 Silent p.V1449V 0.20 TCGA-2F-A9KO-01 10 70992647 70992647 C T HKDC1 Silent p.I118I 0.15 TCGA-2F-A9KO-01 10 73048358 73048358 C T UNC5B Missense_Mutation p.S312L 0.11 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 10 74128016 74128016 G T MICU1 Silent p.L456L 0.13 TCGA-2F-A9KO-01 10 75056795 75056795 C T TTC18 Intron 0.14 TCGA-2F-A9KO-01 10 75059366 75059366 C G TTC18 Missense_Mutation p.Q508H 0.24 deleterious(0.01) probably_damaging(0.952) TCGA-2F-A9KO-01 10 79741237 79741237 C T POLR3A Missense_Mutation p.M1280I 0.20 tolerated(0.21) benign(0.1) TCGA-2F-A9KO-01 10 87362199 87362199 G C GRID1 Missense_Mutation p.P954R 0.15 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-2F-A9KO-01 10 96602692 96602692 G T CYP2C19 Nonsense_Mutation p.E354* 0.19 TCGA-2F-A9KO-01 10 98744091 98744091 G T C10orf12 Missense_Mutation p.D982Y 0.08 deleterious(0.01) possibly_damaging(0.735) TCGA-2F-A9KO-01 10 98766408 98766408 C G SLIT1 Missense_Mutation p.Q1137H 0.15 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KO-01 10 99518990 99518990 C T ZFYVE27 Intron 0.17 TCGA-2F-A9KO-01 11 108117775 108117775 G C ATM Missense_Mutation p.R329T 0.44 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 11 113686082 113686082 G A USP28 Nonsense_Mutation p.Q496* 0.33 TCGA-2F-A9KO-01 11 118501939 118501939 G C PHLDB1 Missense_Mutation p.E615Q 0.18 deleterious(0) probably_damaging(0.91) TCGA-2F-A9KO-01 11 118982025 118982025 G C C2CD2L Missense_Mutation p.R284T 0.36 tolerated(0.57) benign(0.005) TCGA-2F-A9KO-01 11 124135521 124135521 G A OR8G5 Missense_Mutation p.E267K 0.13 deleterious(0.04) benign(0.085) TCGA-2F-A9KO-01 11 1262147 1262147 G A MUC5B Missense_Mutation p.G1346E 0.35 unknown(0) TCGA-2F-A9KO-01 11 133796958 133796958 C A IGSF9B Missense_Mutation p.D554Y 0.62 deleterious(0.01) probably_damaging(1) TCGA-2F-A9KO-01 11 30937078 30937078 C G DCDC1 Missense_Mutation p.W1211C 0.09 deleterious(0) possibly_damaging(0.878) TCGA-2F-A9KO-01 11 43380573 43380573 C T TTC17 Silent p.L23L 0.50 TCGA-2F-A9KO-01 11 47598965 47598965 G A KBTBD4 Missense_Mutation p.S212L 0.48 deleterious(0.01) benign(0.165) TCGA-2F-A9KO-01 11 533469 533469 G T HRAS Nonsense_Mutation p.S145* 0.13 TCGA-2F-A9KO-01 11 55681570 55681570 G T OR5W2 Silent p.A163A 0.08 TCGA-2F-A9KO-01 11 57982343 57982343 C A OR1S1 Missense_Mutation p.L43I 0.04 tolerated(0.12) benign(0.033) TCGA-2F-A9KO-01 11 57982756 57982756 C G OR1S1 Silent p.L180L 0.17 TCGA-2F-A9KO-01 11 58723307 58723307 G T GLYATL1 Missense_Mutation p.R270L 0.11 deleterious(0) possibly_damaging(0.906) TCGA-2F-A9KO-01 11 6190837 6190837 G A OR52B2 Silent p.L240L 0.41 TCGA-2F-A9KO-01 11 62289477 62289477 G A AHNAK Silent p.L4138L 0.33 TCGA-2F-A9KO-01 11 62293299 62293299 G C AHNAK Missense_Mutation p.L2864V 0.18 benign(0.044) TCGA-2F-A9KO-01 11 64418927 64418927 G A NRXN2 Silent p.L906L 0.25 TCGA-2F-A9KO-01 11 64669802 64669802 G A ATG2A Silent p.I1278I 0.14 TCGA-2F-A9KO-01 11 66837940 66837940 C T RHOD Silent p.I125I 0.15 TCGA-2F-A9KO-01 11 67431935 67431935 C T ALDH3B2 Missense_Mutation p.E269K 0.19 deleterious(0.01) possibly_damaging(0.619) TCGA-2F-A9KO-01 11 67942494 67942494 G C SUV420H1 Missense_Mutation p.F178L 0.23 tolerated(0.24) benign(0.011) TCGA-2F-A9KO-01 11 68582809 68582809 C T CPT1A Missense_Mutation p.R45K 0.34 deleterious(0.01) possibly_damaging(0.495) TCGA-2F-A9KO-01 11 68747779 68747779 G A MRGPRD Missense_Mutation p.S226F 0.12 deleterious(0) probably_damaging(0.995) TCGA-2F-A9KO-01 11 7723844 7723844 C T OVCH2 Missense_Mutation p.G108E 0.42 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 11 77924770 77924770 G A USP35 Missense_Mutation p.D990N 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-2F-A9KO-01 11 7949268 7949268 G C OR10A6 Missense_Mutation p.I314M 0.14 tolerated(0.12) benign(0.007) TCGA-2F-A9KO-01 11 92881601 92881601 G C SLC36A4 3'UTR 0.16 TCGA-2F-A9KO-01 11 93470346 93470346 C T TAF1D Silent p.L173L 0.13 TCGA-2F-A9KO-01 11 9496141 9496141 G C ZNF143 Missense_Mutation p.E112Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KO-01 12 104698562 104698562 G C EID3 Missense_Mutation p.E284Q 0.08 deleterious(0.03) possibly_damaging(0.596) TCGA-2F-A9KO-01 12 104707078 104707078 C G TXNRD1 Missense_Mutation p.P198R 0.29 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 12 105282953 105282953 A T SLC41A2 Silent p.V246V 0.16 TCGA-2F-A9KO-01 12 110399113 110399113 G C GIT2 Silent p.V319V 0.36 TCGA-2F-A9KO-01 12 112610476 112610476 C G HECTD4 Silent p.L3782L 0.26 TCGA-2F-A9KO-01 12 113355431 113355431 G C OAS1 Missense_Mutation p.E322Q 0.12 deleterious(0.01) possibly_damaging(0.583) TCGA-2F-A9KO-01 12 117014208 117014208 C A MAP1LC3B2 3'UTR 0.15 TCGA-2F-A9KO-01 12 117513134 117513134 G A TESC Nonsense_Mutation p.Q24* 0.19 TCGA-2F-A9KO-01 12 118627865 118627865 C G TAOK3 Intron 0.17 TCGA-2F-A9KO-01 12 120565529 120565529 T C GCN1L1 3'UTR 0.17 TCGA-2F-A9KO-01 12 120894928 120894928 G A GATC Missense_Mutation p.E102K 0.07 tolerated(0.08) benign(0.393) TCGA-2F-A9KO-01 12 121154517 121154517 C G UNC119B Missense_Mutation p.L149V 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-2F-A9KO-01 12 123782565 123782565 C G SBNO1 Missense_Mutation p.Q1333H 0.09 deleterious(0.01) possibly_damaging(0.7) TCGA-2F-A9KO-01 12 123889520 123889520 C G SETD8 Silent p.L249L 0.15 TCGA-2F-A9KO-01 12 132624720 132624720 C T DDX51 Silent p.A566A 0.05 TCGA-2F-A9KO-01 12 13526177 13526177 C T C12orf36 Silent p.V126V 0.12 TCGA-2F-A9KO-01 12 14923708 14923708 C G HIST4H4 Nonstop_Mutation p.*104Sext*29 0.17 TCGA-2F-A9KO-01 12 21445158 21445158 G A SLCO1A2 Missense_Mutation p.S517L 0.21 deleterious(0) benign(0.119) TCGA-2F-A9KO-01 12 21680068 21680068 G C C12orf39 Splice_Site p.X30_splice 0.18 TCGA-2F-A9KO-01 12 22625729 22625729 C T C2CD5 Missense_Mutation p.D686N 0.09 deleterious(0.01) benign(0.122) TCGA-2F-A9KO-01 12 24102540 24102540 G A SOX5 5'UTR 0.09 TCGA-2F-A9KO-01 12 283836 283836 G A IQSEC3 Silent p.V1062V 0.17 TCGA-2F-A9KO-01 12 368979 368979 C A SLC6A13 Intron 0.09 TCGA-2F-A9KO-01 12 39688181 39688181 G A KIF21A 3'Flank 0.12 TCGA-2F-A9KO-01 12 404928 404928 C G KDM5A Missense_Mutation p.K1422N 0.13 deleterious(0.02) possibly_damaging(0.522) TCGA-2F-A9KO-01 12 40677743 40677743 G A LRRK2 Missense_Mutation p.D770N 0.12 deleterious(0.02) probably_damaging(0.927) TCGA-2F-A9KO-01 12 48132488 48132488 G A RAPGEF3 Silent p.I837I 0.12 TCGA-2F-A9KO-01 12 48133862 48133862 G T RAPGEF3 Intron 0.27 TCGA-2F-A9KO-01 12 48134148 48134148 G A RAPGEF3 Silent p.F754F 0.22 TCGA-2F-A9KO-01 12 48135202 48135202 C A RAPGEF3 Intron 0.13 TCGA-2F-A9KO-01 12 4920665 4920665 G T KCNA6 Silent p.A486A 0.09 TCGA-2F-A9KO-01 12 49420688 49420688 G A KMT2D Nonsense_Mutation p.R5021* 0.14 TCGA-2F-A9KO-01 12 49462822 49462822 C T RHEBL1 Silent p.E40E 0.15 TCGA-2F-A9KO-01 12 49943411 49943411 C G KCNH3 Missense_Mutation p.I552M 0.19 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 12 5154274 5154274 G A KCNA5 Missense_Mutation p.A321T 0.18 tolerated(1) benign(0.006) TCGA-2F-A9KO-01 12 51758035 51758035 C G GALNT6 Missense_Mutation p.E307Q 0.14 tolerated(0.13) benign(0.016) TCGA-2F-A9KO-01 12 53421930 53421930 A C EIF4B Silent p.R313R 0.08 TCGA-2F-A9KO-01 12 55357706 55357706 C G TESPA1 Missense_Mutation p.E159Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-2F-A9KO-01 12 56865374 56865374 A G GLS2 Missense_Mutation p.V569A 0.09 tolerated(0.29) benign(0.05) TCGA-2F-A9KO-01 12 57859009 57859009 C G GLI1 Missense_Mutation p.Q169E 0.20 tolerated(1) benign(0.097) TCGA-2F-A9KO-01 12 57918145 57918145 C T MBD6 Missense_Mutation p.S20F 0.06 tolerated_low_confidence(0.05) unknown(0) TCGA-2F-A9KO-01 12 58124279 58124279 C T AGAP2 Silent p.T809T 0.37 TCGA-2F-A9KO-01 12 62795014 62795014 G C USP15 Missense_Mutation p.D908H 0.19 deleterious(0) probably_damaging(0.989) TCGA-2F-A9KO-01 12 6344708 6344708 G T CD9 Missense_Mutation p.V172L 0.10 tolerated(0.57) benign(0.003) TCGA-2F-A9KO-01 12 65640104 65640104 G A LEMD3 Silent p.%3D 0.12 TCGA-2F-A9KO-01 12 6709469 6709469 C G CHD4 Missense_Mutation p.D386H 0.10 deleterious(0) possibly_damaging(0.538) TCGA-2F-A9KO-01 12 69250240 69250240 G C CPM Missense_Mutation p.L437V 0.13 tolerated_low_confidence(0.8) benign(0.002) TCGA-2F-A9KO-01 12 7090195 7090195 C T LPCAT3 Silent p.L216L 0.21 TCGA-2F-A9KO-01 12 72004084 72004084 G C ZFC3H1 3'UTR 0.28 TCGA-2F-A9KO-01 12 78400700 78400700 C G NAV3 Missense_Mutation p.S461C 0.17 deleterious(0.03) benign(0.031) TCGA-2F-A9KO-01 12 81239618 81239618 C T LIN7A Missense_Mutation p.G125E 0.21 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KO-01 12 81719608 81719608 C T PPFIA2 Missense_Mutation p.G864R 0.12 deleterious(0.02) benign(0.287) TCGA-2F-A9KO-01 12 85255590 85255590 C T SLC6A15 Missense_Mutation p.D672N 0.17 tolerated(0.11) probably_damaging(0.998) TCGA-2F-A9KO-01 12 86268083 86268083 C T NTS 5'UTR 0.11 TCGA-2F-A9KO-01 12 96312674 96312674 C T CCDC38 Missense_Mutation p.E40K 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-2F-A9KO-01 13 101257282 101257282 C T TMTC4 Missense_Mutation p.R750K 0.12 tolerated(0.36) benign(0.051) TCGA-2F-A9KO-01 13 103295664 103295664 G C TPP2 Missense_Mutation p.E705Q 0.10 deleterious(0.03) benign(0.248) TCGA-2F-A9KO-01 13 110830423 110830423 G A COL4A1 Missense_Mutation p.P872S 0.11 benign(0.055) TCGA-2F-A9KO-01 13 114009708 114009708 C G GRTP1 Missense_Mutation p.Q90H 0.29 deleterious(0.04) possibly_damaging(0.811) TCGA-2F-A9KO-01 13 28143169 28143169 C G LNX2 Missense_Mutation p.D218H 0.12 deleterious(0.04) probably_damaging(0.988) TCGA-2F-A9KO-01 13 32911095 32911095 C T BRCA2 Missense_Mutation p.T868I 0.10 tolerated(0.16) benign(0.16) TCGA-2F-A9KO-01 13 39264816 39264816 C T FREM2 Missense_Mutation p.S1112L 0.11 tolerated(0.15) benign(0.053) TCGA-2F-A9KO-01 13 39425118 39425118 C T FREM2 Silent p.D2205D 0.28 TCGA-2F-A9KO-01 13 46946348 46946348 G C KIAA0226L Nonsense_Mutation p.S88* 0.06 TCGA-2F-A9KO-01 13 50586977 50586977 C G TRIM13 Missense_Mutation p.Q304E 0.12 tolerated(0.32) possibly_damaging(0.798) TCGA-2F-A9KO-01 13 50594549 50594549 G C KCNRG Missense_Mutation p.E260Q 0.13 deleterious(0.04) possibly_damaging(0.588) TCGA-2F-A9KO-01 13 53418655 53418655 C T PCDH8 3'UTR 0.35 TCGA-2F-A9KO-01 13 77862308 77862308 G C MYCBP2 Missense_Mutation p.I156M 0.13 benign(0.216) TCGA-2F-A9KO-01 13 84454471 84454471 C T SLITRK1 Missense_Mutation p.R391Q 0.21 tolerated(0.13) benign(0.03) TCGA-2F-A9KO-01 13 96508441 96508441 C A UGGT2 Missense_Mutation p.D1327Y 0.21 deleterious(0.01) benign(0.25) TCGA-2F-A9KO-01 13 98649868 98649868 G C IPO5 Missense_Mutation p.D351H 0.14 deleterious(0) probably_damaging(0.934) TCGA-2F-A9KO-01 14 103442107 103442107 G C CDC42BPB Nonsense_Mutation p.S474* 0.15 TCGA-2F-A9KO-01 14 103574829 103574829 C G EXOC3L4 Missense_Mutation p.L651V 0.13 deleterious(0) probably_damaging(0.974) TCGA-2F-A9KO-01 14 105410218 105410218 G A AHNAK2 Missense_Mutation p.S3857F 0.15 probably_damaging(0.961) TCGA-2F-A9KO-01 14 21945698 21945698 C T TOX4 Missense_Mutation p.S17L 0.25 deleterious(0) benign(0.129) TCGA-2F-A9KO-01 14 22102437 22102437 C G OR10G2 Missense_Mutation p.A188P 0.25 tolerated(1) benign(0.129) TCGA-2F-A9KO-01 14 22508855 22508855 C G TRAV20 5'UTR 0.16 TCGA-2F-A9KO-01 14 22555189 22555189 C G TRAV23DV6 Missense_Mutation p.I105M 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-2F-A9KO-01 14 23313059 23313059 G T MMP14 Missense_Mutation p.G331W 0.10 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 14 23609766 23609766 G A SLC7A8 Silent p.V234V 0.09 TCGA-2F-A9KO-01 14 24586196 24586196 G C DCAF11 Missense_Mutation p.E76Q 0.16 tolerated(0.07) benign(0.075) TCGA-2F-A9KO-01 14 24780846 24780846 G C LTB4R2 Missense_Mutation p.E326Q 0.24 tolerated(0.2) possibly_damaging(0.867) TCGA-2F-A9KO-01 14 24878510 24878510 G C NYNRIN Missense_Mutation p.D504H 0.07 deleterious_low_confidence(0) possibly_damaging(0.659) TCGA-2F-A9KO-01 14 31204796 31204796 C T SCFD1 Missense_Mutation p.S637L 0.23 deleterious(0.04) benign(0.046) TCGA-2F-A9KO-01 14 35565970 35565970 C A PPP2R3C Missense_Mutation p.G236V 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-2F-A9KO-01 14 45590721 45590721 C A FKBP3 Missense_Mutation p.D141Y 0.12 deleterious(0) possibly_damaging(0.86) TCGA-2F-A9KO-01 14 45605496 45605496 A T FANCM Missense_Mutation p.N88Y 0.13 deleterious(0) probably_damaging(0.979) TCGA-2F-A9KO-01 14 45605497 45605497 A T FANCM Missense_Mutation p.N88I 0.13 deleterious(0) possibly_damaging(0.87) TCGA-2F-A9KO-01 14 50074507 50074507 C G LRR1 Silent p.L224L 0.40 TCGA-2F-A9KO-01 14 50269421 50269421 G C NEMF Nonsense_Mutation p.S647* 0.18 TCGA-2F-A9KO-01 14 56079010 56079010 C T KTN1 Nonsense_Mutation p.R82* 0.35 TCGA-2F-A9KO-01 14 59014596 59014596 G A KIAA0586 Missense_Mutation p.E1613K 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.486) TCGA-2F-A9KO-01 14 60936346 60936346 C G C14orf39 Missense_Mutation p.D194H 0.16 deleterious(0) probably_damaging(0.979) TCGA-2F-A9KO-01 14 63473153 63473153 C G KCNH5 Missense_Mutation p.E79Q 0.16 tolerated(0.14) benign(0.306) TCGA-2F-A9KO-01 14 64518410 64518410 G A SYNE2 Silent p.K2593K 0.19 TCGA-2F-A9KO-01 14 64518723 64518723 G C SYNE2 Missense_Mutation p.E2698Q 0.21 probably_damaging(0.947) TCGA-2F-A9KO-01 14 64519341 64519341 G T SYNE2 Nonsense_Mutation p.E2904* 0.19 TCGA-2F-A9KO-01 14 64519346 64519346 G T SYNE2 Silent p.L2905L 0.21 TCGA-2F-A9KO-01 14 68265217 68265217 C T ZFYVE26 Missense_Mutation p.D588N 0.38 deleterious(0.03) benign(0.051) TCGA-2F-A9KO-01 14 71374687 71374687 C T PCNX Silent p.L40L 0.47 TCGA-2F-A9KO-01 14 74753127 74753127 C A ABCD4 3'UTR 0.35 TCGA-2F-A9KO-01 14 95570086 95570086 G A DICER1 Missense_Mutation p.S1216L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-2F-A9KO-01 14 95570330 95570330 G C DICER1 Missense_Mutation p.Q1135E 0.24 tolerated_low_confidence(0.67) benign(0) TCGA-2F-A9KO-01 14 95596491 95596491 C G DICER1 Missense_Mutation p.L159F 0.14 deleterious(0.01) probably_damaging(0.909) TCGA-2F-A9KO-01 14 96777540 96777540 G A ATG2B Missense_Mutation p.L1359F 0.12 deleterious(0) probably_damaging(0.991) TCGA-2F-A9KO-01 15 20588619 20588619 C T HERC2P3 RNA 0.07 TCGA-2F-A9KO-01 15 22472973 22472973 G T IGHV4OR15-8 Missense_Mutation p.L100M 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-2F-A9KO-01 15 24922498 24922498 C A NPAP1 Missense_Mutation p.S495Y 0.28 deleterious(0.04) probably_damaging(0.982) TCGA-2F-A9KO-01 15 25432688 25432688 G A SNORD115-10 RNA 0.28 TCGA-2F-A9KO-01 15 28267711 28267711 G A OCA2 Silent p.F194F 0.37 TCGA-2F-A9KO-01 15 32928554 32928554 C T ARHGAP11A Missense_Mutation p.S527L 0.19 tolerated(0.2) benign(0.067) TCGA-2F-A9KO-01 15 34072437 34072437 C G RYR3 Missense_Mutation p.L3055V 0.07 possibly_damaging(0.751) TCGA-2F-A9KO-01 15 41105033 41105033 G A ZFYVE19 Silent p.T321T 0.22 TCGA-2F-A9KO-01 15 41522776 41522776 C G EXD1 5'UTR 0.17 TCGA-2F-A9KO-01 15 41605509 41605509 C T OIP5 Missense_Mutation p.D186N 0.14 tolerated(0.38) probably_damaging(0.955) TCGA-2F-A9KO-01 15 41795658 41795658 G T ITPKA 3'UTR 0.33 TCGA-2F-A9KO-01 15 44888530 44888530 G C SPG11 Missense_Mutation p.F1395L 0.15 deleterious(0.04) probably_damaging(0.916) TCGA-2F-A9KO-01 15 49420945 49420945 C G COPS2 Missense_Mutation p.D388H 0.28 tolerated(0.08) possibly_damaging(0.852) TCGA-2F-A9KO-01 15 51750971 51750971 G A DMXL2 Missense_Mutation p.P2650S 0.20 tolerated(0.11) probably_damaging(0.999) TCGA-2F-A9KO-01 15 51834543 51834543 G A DMXL2 Silent p.I364I 0.13 TCGA-2F-A9KO-01 15 52645825 52645825 C T MYO5A Missense_Mutation p.E1200K 0.08 deleterious(0.05) probably_damaging(0.992) TCGA-2F-A9KO-01 15 55970094 55970094 C A PRTG Nonsense_Mutation p.E428* 0.14 TCGA-2F-A9KO-01 15 57730541 57730541 G C CGNL1 Missense_Mutation p.R115T 0.12 tolerated(0.1) benign(0.185) TCGA-2F-A9KO-01 15 57730567 57730567 G C CGNL1 Missense_Mutation p.E124Q 0.11 tolerated(0.16) possibly_damaging(0.783) TCGA-2F-A9KO-01 15 63930724 63930724 C A HERC1 Silent p.L3993L 0.21 TCGA-2F-A9KO-01 15 72968724 72968724 C A HIGD2B 5'UTR 0.15 TCGA-2F-A9KO-01 15 75013974 75013974 C G CYP1A1 Missense_Mutation p.D304H 0.14 tolerated(0.05) benign(0.048) TCGA-2F-A9KO-01 15 75115901 75115901 G A LMAN1L Missense_Mutation p.D401N 0.08 tolerated(0.8) benign(0.006) TCGA-2F-A9KO-01 15 75498895 75498895 C T C15orf39 Missense_Mutation p.S169L 0.19 tolerated(0.15) possibly_damaging(0.504) TCGA-2F-A9KO-01 15 75798183 75798183 G C PTPN9 Missense_Mutation p.F267L 0.13 tolerated(0.7) benign(0) TCGA-2F-A9KO-01 15 75969093 75969093 C G CSPG4 Missense_Mutation p.D1923H 0.20 deleterious(0) probably_damaging(0.966) TCGA-2F-A9KO-01 15 75982637 75982637 C G CSPG4 Missense_Mutation p.E257Q 0.28 tolerated(0.23) possibly_damaging(0.653) TCGA-2F-A9KO-01 15 77907795 77907795 C T LINGO1 Missense_Mutation p.E152K 0.25 deleterious(0.03) possibly_damaging(0.839) TCGA-2F-A9KO-01 15 82431176 82431176 G A EFTUD1 Silent p.V999V 0.26 TCGA-2F-A9KO-01 15 91182020 91182020 G A CRTC3 Missense_Mutation p.M507I 0.13 tolerated(0.28) benign(0.001) TCGA-2F-A9KO-01 15 99452112 99452113 - G IGF1R Frame_Shift_Ins p.E484Gfs*6 0.19 TCGA-2F-A9KO-01 16 11850152 11850152 G A ZC3H7A Nonsense_Mutation p.Q835* 0.14 TCGA-2F-A9KO-01 16 1503832 1503832 C T CLCN7 Intron 0.20 TCGA-2F-A9KO-01 16 19475284 19475284 C G TMC5 Missense_Mutation p.Q475E 0.17 deleterious(0) probably_damaging(0.984) TCGA-2F-A9KO-01 16 20362065 20362065 C G UMOD 5'UTR 0.08 TCGA-2F-A9KO-01 16 23693416 23693416 G C PLK1 Missense_Mutation p.E252Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-2F-A9KO-01 16 27549623 27549623 C T GTF3C1 Silent p.L162L 0.12 TCGA-2F-A9KO-01 16 28913402 28913402 C T ATP2A1 Silent p.V773V 0.17 TCGA-2F-A9KO-01 16 29923351 29923351 G A KCTD13 Missense_Mutation p.S145F 0.44 deleterious(0.01) benign(0.011) TCGA-2F-A9KO-01 16 30122749 30122749 C T GDPD3 Missense_Mutation p.E223K 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-2F-A9KO-01 16 30123468 30123468 C T GDPD3 Silent p.K186K 0.17 TCGA-2F-A9KO-01 16 30544249 30544249 C G ZNF747 3'UTR 0.19 TCGA-2F-A9KO-01 16 30544281 30544281 C T ZNF747 3'UTR 0.17 TCGA-2F-A9KO-01 16 3282848 3282848 C T ZNF200 Silent p.L108L 0.24 TCGA-2F-A9KO-01 16 46697018 46697018 G A VPS35 Silent p.I568I 0.06 TCGA-2F-A9KO-01 16 46836835 46836835 G A C16orf87 3'UTR 0.19 TCGA-2F-A9KO-01 16 4882142 4882142 C T GLYR1 Silent p.E125E 0.20 TCGA-2F-A9KO-01 16 50345601 50345601 C T ADCY7 Intron 0.12 TCGA-2F-A9KO-01 16 57062286 57062286 G A NLRC5 Silent p.L744L 0.17 TCGA-2F-A9KO-01 16 57417044 57417044 G A CX3CL1 3'UTR 0.14 TCGA-2F-A9KO-01 16 61761012 61761012 C A CDH8 Nonsense_Mutation p.G508* 0.21 TCGA-2F-A9KO-01 16 66968229 66968229 C G FAM96B Missense_Mutation p.E13D 0.20 tolerated(0.52) benign(0.002) TCGA-2F-A9KO-01 16 67201124 67201124 C G HSF4 Missense_Mutation p.S243W 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-2F-A9KO-01 16 67709544 67709544 G A GFOD2 Silent p.F224F 0.10 TCGA-2F-A9KO-01 16 67917809 67917809 C G EDC4 Intron 0.24 TCGA-2F-A9KO-01 16 76528804 76528804 C T CNTNAP4 Intron 0.29 TCGA-2F-A9KO-01 16 82033362 82033362 C G SDR42E1 Missense_Mutation p.R179T 0.14 deleterious(0) possibly_damaging(0.772) TCGA-2F-A9KO-01 16 85695087 85695087 G A GSE1 Missense_Mutation p.G659E 0.24 tolerated(0.09) benign(0.109) TCGA-2F-A9KO-01 16 89350709 89350709 C T ANKRD11 Silent p.S747S 0.15 TCGA-2F-A9KO-01 17 18210208 18210208 G A TOP3A Silent p.I129I 0.28 TCGA-2F-A9KO-01 17 20239263 20239263 C T RN7SL17P 5'Flank 0.32 TCGA-2F-A9KO-01 17 26652669 26652669 C T TMEM97 Silent p.L89L 0.12 TCGA-2F-A9KO-01 17 26951260 26951260 G C KIAA0100 Silent p.V1581V 0.09 TCGA-2F-A9KO-01 17 29276307 29276307 G A ADAP2 Silent p.E220E 0.11 TCGA-2F-A9KO-01 17 29631257 29631257 C A EVI2B 3'UTR 0.08 TCGA-2F-A9KO-01 17 29647475 29647475 G C EVI2A 5'UTR 0.29 TCGA-2F-A9KO-01 17 32685048 32685048 C G CCL13 Missense_Mutation p.F65L 0.10 deleterious(0.02) possibly_damaging(0.802) TCGA-2F-A9KO-01 17 33259411 33259411 G T CCT6B Missense_Mutation p.A441D 0.14 deleterious(0) probably_damaging(0.986) TCGA-2F-A9KO-01 17 3539490 3539490 G T SHPK Silent p.L8L 0.15 TCGA-2F-A9KO-01 17 36002277 36002278 - A DDX52 Frame_Shift_Ins p.G50Wfs*31 0.26 TCGA-2F-A9KO-01 17 36717828 36717828 C T SRCIN1 Missense_Mutation p.G524E 0.18 tolerated(0.18) benign(0.228) TCGA-2F-A9KO-01 17 37627686 37627686 C T CDK12 Missense_Mutation p.S534F 0.14 possibly_damaging(0.828) TCGA-2F-A9KO-01 17 3839580 3839580 G A ATP2A3 Silent p.F835F 0.42 TCGA-2F-A9KO-01 17 40874832 40874832 C T EZH1 Silent p.G156G 0.09 TCGA-2F-A9KO-01 17 40997271 40997271 C T AOC2 Missense_Mutation p.R210W 0.15 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 17 43363800 43363800 C T MAP3K14 Intron 0.29 TCGA-2F-A9KO-01 17 43363963 43363963 C T MAP3K14 RNA 0.12 TCGA-2F-A9KO-01 17 46871573 46871573 C T TTLL6 Intron 0.10 TCGA-2F-A9KO-01 17 4876139 4876139 C T CAMTA2 Missense_Mutation p.E833K 0.22 deleterious(0) benign(0.142) TCGA-2F-A9KO-01 17 4996162 4996162 G C ZFP3 Missense_Mutation p.E455Q 0.10 tolerated(0.07) benign(0.024) TCGA-2F-A9KO-01 17 5037247 5037247 G A USP6 Silent p.T150T 0.26 TCGA-2F-A9KO-01 17 5087558 5087558 C G ZNF594 5'UTR 0.27 TCGA-2F-A9KO-01 17 5235304 5235304 G A RABEP1 Missense_Mutation p.R75Q 0.13 tolerated(1) benign(0.001) TCGA-2F-A9KO-01 17 57288157 57288157 C G SMG8 Missense_Mutation p.P249A 0.24 tolerated(0.14) benign(0.015) TCGA-2F-A9KO-01 17 61623093 61623093 G C KCNH6 Missense_Mutation p.E939Q 0.07 tolerated_low_confidence(0.47) benign(0.006) TCGA-2F-A9KO-01 17 62553750 62553750 G T SMURF2 Silent p.I469I 0.31 TCGA-2F-A9KO-01 17 66033495 66033495 G C KPNA2 Missense_Mutation p.E33Q 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-2F-A9KO-01 17 66520184 66520184 C G PRKAR1A Silent p.V156V 0.15 TCGA-2F-A9KO-01 17 71232397 71232397 C G C17orf80 Nonsense_Mutation p.S259* 0.25 TCGA-2F-A9KO-01 17 72938033 72938033 C T OTOP3 Silent p.L176L 0.34 TCGA-2F-A9KO-01 17 7365433 7365433 C A ZBTB4 Missense_Mutation p.K956N 0.11 possibly_damaging(0.833) TCGA-2F-A9KO-01 17 7367107 7367107 C T ZBTB4 Silent p.E398E 0.13 TCGA-2F-A9KO-01 17 73750888 73750888 C A ITGB4 Missense_Mutation p.S1517Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-2F-A9KO-01 17 73811302 73811302 G T UNK Missense_Mutation p.R310L 0.07 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 17 74150188 74150188 G C RNF157 Intron 0.24 TCGA-2F-A9KO-01 17 7606582 7606582 C G WRAP53 Silent p.L475L 0.20 TCGA-2F-A9KO-01 17 7606646 7606646 G T WRAP53 Nonsense_Mutation p.E497* 0.10 TCGA-2F-A9KO-01 17 77808556 77808556 C G CBX4 Missense_Mutation p.K295N 0.09 tolerated(0.22) benign(0.154) TCGA-2F-A9KO-01 17 77808877 77808877 C A CBX4 Silent p.L188L 0.19 TCGA-2F-A9KO-01 17 78321350 78321350 C G RNF213 Missense_Mutation p.S3072C 0.15 probably_damaging(0.999) TCGA-2F-A9KO-01 17 78321932 78321932 C T RNF213 Missense_Mutation p.A3266V 0.15 probably_damaging(0.999) TCGA-2F-A9KO-01 17 79792336 79792336 G C PPP1R27 Intron 0.13 TCGA-2F-A9KO-01 17 80036995 80036995 C T FASN 3'UTR 0.25 TCGA-2F-A9KO-01 17 80136453 80136453 T C CCDC57 Missense_Mutation p.Q468R 0.28 tolerated(1) benign(0.002) TCGA-2F-A9KO-01 17 80231290 80231290 C A CSNK1D 5'UTR 0.23 TCGA-2F-A9KO-01 17 80545005 80545005 C T FOXK2 Missense_Mutation p.T548M 0.16 tolerated(0.1) benign(0.154) TCGA-2F-A9KO-01 17 80887349 80887349 G T TBCD Silent p.V988V 0.35 TCGA-2F-A9KO-01 17 8526502 8526502 G C MYH10 Missense_Mutation p.I21M 0.14 benign(0.279) TCGA-2F-A9KO-01 17 9674975 9674975 C G DHRS7C Missense_Mutation p.E257Q 0.29 tolerated(0.1) possibly_damaging(0.501) TCGA-2F-A9KO-01 18 13731886 13731886 C A RNMT Missense_Mutation p.Q124K 0.19 tolerated(0.64) benign(0.013) TCGA-2F-A9KO-01 18 22020561 22020561 G C IMPACT Missense_Mutation p.D157H 0.15 tolerated(0.09) benign(0.129) TCGA-2F-A9KO-01 18 265325 265325 C T THOC1 Missense_Mutation p.R56K 0.25 tolerated(0.07) probably_damaging(0.996) TCGA-2F-A9KO-01 18 28654751 28654751 C T DSC2 Missense_Mutation p.A596T 0.24 deleterious(0.01) possibly_damaging(0.536) TCGA-2F-A9KO-01 18 319965 319965 G C COLEC12 3'UTR 0.36 TCGA-2F-A9KO-01 18 3253278 3253278 G A MYL12A Silent p.K11K 0.15 TCGA-2F-A9KO-01 18 42531943 42531943 G A SETBP1 Missense_Mutation p.D880N 0.17 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KO-01 18 5415970 5415970 G T EPB41L3 Missense_Mutation p.F638L 0.17 tolerated(0.26) probably_damaging(0.928) TCGA-2F-A9KO-01 18 5438044 5438044 C G EPB41L3 Missense_Mutation p.D199H 0.20 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 18 56149081 56149081 C G ALPK2 Missense_Mutation p.E2163Q 0.18 tolerated(0.07) benign(0.093) TCGA-2F-A9KO-01 18 64211462 64211462 C G CDH19 Splice_Site p.X321_splice 0.14 TCGA-2F-A9KO-01 18 65178355 65178355 T G DSEL Missense_Mutation p.N1174T 0.17 deleterious(0.04) benign(0.318) TCGA-2F-A9KO-01 19 10531484 10531484 C T PDE4A Missense_Mutation p.S15L 0.20 deleterious_low_confidence(0) benign(0.01) TCGA-2F-A9KO-01 19 12758381 12758381 G A MAN2B1 Missense_Mutation p.S899L 0.11 deleterious(0.03) benign(0.225) TCGA-2F-A9KO-01 19 13007149 13007149 C T GCDH Silent p.L256L 0.21 TCGA-2F-A9KO-01 19 15726550 15726550 C G AD000091.2 5'Flank 0.12 TCGA-2F-A9KO-01 19 17598103 17598103 C T SLC27A1 Missense_Mutation p.S228F 0.18 deleterious(0.01) possibly_damaging(0.839) TCGA-2F-A9KO-01 19 17919112 17919112 G T B3GNT3 Nonsense_Mutation p.E166* 0.19 TCGA-2F-A9KO-01 19 19656696 19656696 C T CILP2 Silent p.L1114L 0.17 TCGA-2F-A9KO-01 19 19765986 19765986 C G ATP13A1 Missense_Mutation p.D533H 0.11 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 19 2234155 2234155 C T PLEKHJ1 Missense_Mutation p.R105Q 0.12 tolerated(0.65) benign(0.009) TCGA-2F-A9KO-01 19 2254460 2254460 G C JSRP1 Missense_Mutation p.S44C 0.17 deleterious(0.03) probably_damaging(0.917) TCGA-2F-A9KO-01 19 24309632 24309632 G A ZNF254 Missense_Mutation p.R277Q 0.12 tolerated(0.92) benign(0) TCGA-2F-A9KO-01 19 33078192 33078192 G C PDCD5 Missense_Mutation p.D122H 0.09 deleterious(0) possibly_damaging(0.586) TCGA-2F-A9KO-01 19 37620087 37620087 G A ZNF420 3'UTR 0.29 TCGA-2F-A9KO-01 19 38027903 38027903 G A ZNF793 Missense_Mutation p.E115K 0.16 tolerated(0.3) benign(0.001) TCGA-2F-A9KO-01 19 39001179 39001179 G T RYR1 Nonsense_Mutation p.E2992* 0.20 TCGA-2F-A9KO-01 19 3977234 3977234 G A EEF2 Silent p.L788L 0.26 TCGA-2F-A9KO-01 19 41944187 41944187 C T ATP5SL Missense_Mutation p.D57N 0.30 deleterious(0) probably_damaging(0.977) TCGA-2F-A9KO-01 19 42820680 42820680 G A TMEM145 Missense_Mutation p.D232N 0.13 tolerated(0.28) benign(0.016) TCGA-2F-A9KO-01 19 45202430 45202430 C T CEACAM16 5'UTR 0.15 TCGA-2F-A9KO-01 19 46021215 46021215 G A VASP Missense_Mutation p.G69D 0.22 deleterious(0) unknown(0) TCGA-2F-A9KO-01 19 49132480 49132480 C T SPHK2 Missense_Mutation p.S472F 0.12 tolerated(0.47) benign(0.11) TCGA-2F-A9KO-01 19 49481208 49481208 C G GYS1 Missense_Mutation p.M427I 0.11 tolerated(0.47) benign(0.011) TCGA-2F-A9KO-01 19 49867893 49867893 C G DKKL1 Missense_Mutation p.S22C 0.15 tolerated_low_confidence(0.1) probably_damaging(0.938) TCGA-2F-A9KO-01 19 50027840 50027840 C G FCGRT Missense_Mutation p.F226L 0.12 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 19 50462060 50462060 C G SIGLEC11 Silent p.L401L 0.18 TCGA-2F-A9KO-01 19 52569145 52569145 G A ZNF841 Nonsense_Mutation p.Q664* 0.12 TCGA-2F-A9KO-01 19 53571361 53571361 C G ZNF160 Missense_Mutation p.R809T 0.13 tolerated(0.17) benign(0.002) TCGA-2F-A9KO-01 19 53844485 53844485 C T ZNF845 Intron 0.28 TCGA-2F-A9KO-01 19 54327474 54327474 C T NLRP12 5'UTR 0.15 TCGA-2F-A9KO-01 19 56466469 56466469 C G NLRP8 Missense_Mutation p.P349A 0.14 tolerated(0.06) probably_damaging(0.987) TCGA-2F-A9KO-01 19 56552342 56552342 C T NLRP5 Silent p.L947L 0.08 TCGA-2F-A9KO-01 19 5711790 5711790 C T LONP1 Missense_Mutation p.E288K 0.17 tolerated(0.15) possibly_damaging(0.842) TCGA-2F-A9KO-01 19 57803410 57803410 G A ZNF460 Missense_Mutation p.E501K 0.12 tolerated(0.21) benign(0.007) TCGA-2F-A9KO-01 19 5786498 5786498 G T DUS3L Silent p.V514V 0.32 TCGA-2F-A9KO-01 19 57889199 57889199 G T ZNF547 Missense_Mutation p.R285S 0.16 tolerated(0.07) possibly_damaging(0.776) TCGA-2F-A9KO-01 19 57889289 57889289 G T ZNF547 Missense_Mutation p.Q315H 0.11 deleterious(0.04) probably_damaging(0.965) TCGA-2F-A9KO-01 19 902052 902052 G A R3HDM4 Silent p.F50F 0.07 TCGA-2F-A9KO-01 1 100152236 100152236 G C PALMD Missense_Mutation p.E86Q 0.17 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 1 103453263 103453263 C A COL11A1 Missense_Mutation p.D810Y 0.24 unknown(0) TCGA-2F-A9KO-01 1 109193814 109193814 G A HENMT1 Missense_Mutation p.S139L 0.16 deleterious(0.05) benign(0.01) TCGA-2F-A9KO-01 1 111147017 111147017 C T KCNA2 Missense_Mutation p.E130K 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-2F-A9KO-01 1 112298525 112298525 G A DDX20 5'UTR 0.13 TCGA-2F-A9KO-01 1 114184734 114184734 A T MAGI3 Missense_Mutation p.K521M 0.12 tolerated(0.06) possibly_damaging(0.477) TCGA-2F-A9KO-01 1 117699367 117699367 C G VTCN1 Missense_Mutation p.E92Q 0.10 tolerated(0.1) benign(0.011) TCGA-2F-A9KO-01 1 118629576 118629576 C T SPAG17 Missense_Mutation p.R472K 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-2F-A9KO-01 1 12921480 12921480 G A PRAMEF2 Missense_Mutation p.R424H 0.14 tolerated(0.62) benign(0.002) TCGA-2F-A9KO-01 1 12943166 12943166 C T PRAMEF4 Missense_Mutation p.R17Q 0.15 tolerated(1) benign(0.002) TCGA-2F-A9KO-01 1 147380410 147380410 G A GJA8 Missense_Mutation p.E110K 0.30 deleterious(0.05) benign(0.072) TCGA-2F-A9KO-01 1 150053426 150053426 G A VPS45 Nonsense_Mutation p.W230* 0.10 TCGA-2F-A9KO-01 1 150318945 150318945 G C PRPF3 Missense_Mutation p.Q607H 0.10 tolerated(0.18) benign(0.012) TCGA-2F-A9KO-01 1 152058910 152058910 G T TCHHL1 Silent p.V416V 0.03 TCGA-2F-A9KO-01 1 152785389 152785389 C G LCE1B 3'UTR 0.30 TCGA-2F-A9KO-01 1 152957702 152957702 G T SPRR1A 5'UTR 0.10 TCGA-2F-A9KO-01 1 154525255 154525255 C T UBE2Q1 Missense_Mutation p.M257I 0.17 deleterious(0) possibly_damaging(0.891) TCGA-2F-A9KO-01 1 155029461 155029461 C A ADAM15 Silent p.S344S 0.16 TCGA-2F-A9KO-01 1 156305640 156305640 G C CCT3 Missense_Mutation p.S24C 0.27 tolerated(0.08) benign(0.345) TCGA-2F-A9KO-01 1 157665317 157665317 C T FCRL3 Missense_Mutation p.E405K 0.36 tolerated(0.07) possibly_damaging(0.718) TCGA-2F-A9KO-01 1 157669493 157669493 C G FCRL3 Missense_Mutation p.R14T 0.10 tolerated(0.09) benign(0.109) TCGA-2F-A9KO-01 1 158906794 158906794 G C PYHIN1 Missense_Mutation p.D32H 0.06 deleterious(0) probably_damaging(0.973) TCGA-2F-A9KO-01 1 160969970 160969970 G C F11R Missense_Mutation p.S186C 0.35 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KO-01 1 161200808 161200808 G C NR1I3 Intron 0.11 TCGA-2F-A9KO-01 1 161494967 161494967 G A HSPA6 Silent p.R173R 0.34 TCGA-2F-A9KO-01 1 16534530 16534530 C T ARHGEF19 Silent p.L201L 0.14 TCGA-2F-A9KO-01 1 167096105 167096105 G C DUSP27 Missense_Mutation p.K579N 0.14 deleterious(0.02) benign(0.157) TCGA-2F-A9KO-01 1 171310923 171310923 G A FMO4 Missense_Mutation p.R541K 0.12 tolerated(1) benign(0.002) TCGA-2F-A9KO-01 1 17698755 17698755 G C PADI6 RNA 0.13 TCGA-2F-A9KO-01 1 178821845 178821845 G T ANGPTL1 Missense_Mutation p.L421M 0.05 deleterious(0.04) probably_damaging(1) TCGA-2F-A9KO-01 1 178871316 178871316 G C RALGPS2 Missense_Mutation p.D534H 0.13 deleterious(0) probably_damaging(0.972) TCGA-2F-A9KO-01 1 180959213 180959213 C G STX6 Missense_Mutation p.W132C 0.26 tolerated(0.18) probably_damaging(0.962) TCGA-2F-A9KO-01 1 181548263 181548263 T A CACNA1E Silent p.I224I 0.30 TCGA-2F-A9KO-01 1 183261927 183261927 G T NMNAT2 Silent p.I80I 0.15 TCGA-2F-A9KO-01 1 183617619 183617619 C G APOBEC4 Missense_Mutation p.E100Q 0.08 deleterious(0.03) possibly_damaging(0.613) TCGA-2F-A9KO-01 1 197396999 197396999 C T CRB1 Silent p.F848F 0.10 TCGA-2F-A9KO-01 1 198262152 198262152 G A NEK7 Missense_Mutation p.G223S 0.19 deleterious(0) probably_damaging(0.989) TCGA-2F-A9KO-01 1 198718610 198718610 G C PTPRC Missense_Mutation p.D1002H 0.25 deleterious(0) probably_damaging(0.988) TCGA-2F-A9KO-01 1 199996974 199996974 G A NR5A2 5'UTR 0.20 TCGA-2F-A9KO-01 1 201817647 201817647 C G IPO9 Missense_Mutation p.L147V 0.16 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KO-01 1 204198202 204198202 C G PLEKHA6 Missense_Mutation p.D872H 0.11 deleterious(0) probably_damaging(0.914) TCGA-2F-A9KO-01 1 206811015 206811016 AC - DYRK3 Frame_Shift_Del p.T34Lfs*6 0.15 TCGA-2F-A9KO-01 1 22142464 22142464 G A LDLRAD2 Silent p.Q180Q 0.26 TCGA-2F-A9KO-01 1 227842306 227842306 C G ZNF678 Missense_Mutation p.H119D 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-2F-A9KO-01 1 235599912 235599912 C G TBCE Missense_Mutation p.Q318E 0.31 tolerated(0.11) benign(0.007) TCGA-2F-A9KO-01 1 23710892 23710892 C T TCEA3 Missense_Mutation p.D329N 0.14 deleterious(0) probably_damaging(0.987) TCGA-2F-A9KO-01 1 247202111 247202111 C G ZNF670 Splice_Site p.X64_splice 0.27 TCGA-2F-A9KO-01 1 248844975 248844975 G C OR14I1 Missense_Mutation p.L211V 0.13 tolerated(0.06) benign(0.259) TCGA-2F-A9KO-01 1 248845225 248845225 G T OR14I1 Silent p.P127P 0.37 TCGA-2F-A9KO-01 1 27087458 27087458 C T ARID1A Nonsense_Mutation p.Q678* 0.14 TCGA-2F-A9KO-01 1 27272063 27272063 C A NUDC Nonsense_Mutation p.S277* 0.19 TCGA-2F-A9KO-01 1 32690056 32690056 G C EIF3I Missense_Mutation p.R77P 0.10 deleterious(0) possibly_damaging(0.8) TCGA-2F-A9KO-01 1 36384758 36384758 C T AGO1 Nonsense_Mutation p.R790* 0.09 TCGA-2F-A9KO-01 1 39907633 39907633 G C MACF1 Missense_Mutation p.D4169H 0.21 probably_damaging(1) TCGA-2F-A9KO-01 1 40226020 40226020 G C BMP8B 3'UTR 0.09 TCGA-2F-A9KO-01 1 41284199 41284199 G A KCNQ4 Silent p.S185S 0.15 TCGA-2F-A9KO-01 1 45808471 45808471 G C TOE1 Intron 0.25 TCGA-2F-A9KO-01 1 47131003 47131003 C G ATPAF1 Missense_Mutation p.E123D 0.12 tolerated(0.15) benign(0.169) TCGA-2F-A9KO-01 1 76344739 76344739 C G MSH4 Missense_Mutation p.R535G 0.10 deleterious(0) probably_damaging(0.996) TCGA-2F-A9KO-01 1 7907868 7907868 C G UTS2 Missense_Mutation p.K126N 0.18 deleterious(0.02) possibly_damaging(0.876) TCGA-2F-A9KO-01 1 82416756 82416756 C G LPHN2 Missense_Mutation p.P516R 0.22 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 1 92712659 92712659 C G GLMN Missense_Mutation p.G543A 0.16 tolerated(0.14) possibly_damaging(0.626) TCGA-2F-A9KO-01 1 95657184 95657184 C T TMEM56 Silent p.F184F 0.19 TCGA-2F-A9KO-01 1 97771776 97771776 T G DPYD Silent p.P712P 0.18 TCGA-2F-A9KO-01 20 30681784 30681784 G A HCK Missense_Mutation p.R404Q 0.35 deleterious(0.04) possibly_damaging(0.636) TCGA-2F-A9KO-01 20 31625463 31625463 G A BPIFB6 Silent p.Q255Q 0.11 TCGA-2F-A9KO-01 20 31625464 31625464 C A BPIFB6 Missense_Mutation p.L256M 0.10 deleterious(0) probably_damaging(0.996) TCGA-2F-A9KO-01 20 32210963 32210963 C T CBFA2T2 Missense_Mutation p.R194W 0.09 deleterious(0.01) probably_damaging(0.957) TCGA-2F-A9KO-01 20 32295554 32295554 G C PXMP4 Missense_Mutation p.I199M 0.20 deleterious(0.03) possibly_damaging(0.482) TCGA-2F-A9KO-01 20 32295584 32295584 G C PXMP4 Silent p.L189L 0.22 TCGA-2F-A9KO-01 20 33324499 33324499 C G NCOA6 Missense_Mutation p.R1986T 0.09 possibly_damaging(0.837) TCGA-2F-A9KO-01 20 34091616 34091616 G A CEP250 Missense_Mutation p.E1807K 0.09 benign(0.024) TCGA-2F-A9KO-01 20 34091626 34091626 G C CEP250 Missense_Mutation p.R1810T 0.11 benign(0.425) TCGA-2F-A9KO-01 20 34572561 34572561 C A CNBD2 Missense_Mutation p.L193M 0.12 deleterious(0.01) benign(0.266) TCGA-2F-A9KO-01 20 35929739 35929739 G A MANBAL Missense_Mutation p.G25R 0.16 deleterious(0.05) probably_damaging(1) TCGA-2F-A9KO-01 20 37464732 37464732 G A PPP1R16B Missense_Mutation p.R55H 0.26 deleterious(0.01) possibly_damaging(0.899) TCGA-2F-A9KO-01 20 39831489 39831489 C T ZHX3 Missense_Mutation p.E690K 0.05 tolerated(0.45) benign(0.097) TCGA-2F-A9KO-01 20 40117221 40117221 G C CHD6 Missense_Mutation p.F568L 0.23 tolerated(0.2) benign(0.123) TCGA-2F-A9KO-01 20 44037124 44037124 G A DBNDD2 Missense_Mutation p.R108Q 0.08 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-2F-A9KO-01 20 44640364 44640364 C T MMP9 Silent p.L325L 0.18 TCGA-2F-A9KO-01 20 47614908 47614908 G T ARFGEF2 Missense_Mutation p.D1100Y 0.16 deleterious(0.03) benign(0.364) TCGA-2F-A9KO-01 20 47679743 47679743 G C CSE1L Missense_Mutation p.E30D 0.09 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 20 52774034 52774034 C G CYP24A1 Missense_Mutation p.E443Q 0.08 tolerated(0.15) benign(0.071) TCGA-2F-A9KO-01 20 61143549 61143549 C G C20orf166 5'Flank 0.42 TCGA-2F-A9KO-01 20 61167667 61167667 C G C20orf166 Missense_Mutation p.S46C 0.50 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-2F-A9KO-01 20 61572936 61572936 G C GID8 Missense_Mutation p.D28H 0.08 deleterious(0) probably_damaging(0.979) TCGA-2F-A9KO-01 20 61909518 61909518 G C ARFGAP1 Missense_Mutation p.E165Q 0.05 tolerated(0.14) possibly_damaging(0.58) TCGA-2F-A9KO-01 20 62366548 62366548 C G ZGPAT Missense_Mutation p.I363M 0.12 deleterious(0) probably_damaging(0.973) TCGA-2F-A9KO-01 20 7875815 7875815 G C HAO1 Missense_Mutation p.H260D 0.36 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KO-01 21 32185210 32185210 C G KRTAP8-1 3'UTR 0.21 TCGA-2F-A9KO-01 21 33068523 33068523 C G SCAF4 Missense_Mutation p.G324A 0.20 benign(0.057) TCGA-2F-A9KO-01 21 45545908 45545908 G T PWP2 Missense_Mutation p.R661I 0.14 deleterious(0) probably_damaging(0.917) TCGA-2F-A9KO-01 21 45710921 45710921 C G AIRE Intron 0.10 TCGA-2F-A9KO-01 21 46074277 46074277 G A KRTAP12-4 Silent p.F85F 0.13 TCGA-2F-A9KO-01 21 47423989 47423989 G C COL6A1 3'UTR 0.22 TCGA-2F-A9KO-01 21 47633694 47633694 G A LSS Missense_Mutation p.T356I 0.16 tolerated(0.37) benign(0.002) TCGA-2F-A9KO-01 22 18022456 18022456 G A CECR2 Missense_Mutation p.G854E 0.17 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-2F-A9KO-01 22 19213751 19213751 G C CLTCL1 Silent p.L646L 0.29 TCGA-2F-A9KO-01 22 19365559 19365559 G T HIRA Silent p.I482I 0.11 TCGA-2F-A9KO-01 22 19379666 19379666 G T HIRA Nonsense_Mutation p.C298* 0.12 TCGA-2F-A9KO-01 22 20760197 20760197 C G ZNF74 Missense_Mutation p.L292V 0.12 tolerated(0.34) benign(0.011) TCGA-2F-A9KO-01 22 20800943 20800943 C T KLHL22 Silent p.A442A 0.17 TCGA-2F-A9KO-01 22 20907444 20907444 C T MED15 Missense_Mutation p.S74F 0.11 deleterious(0) unknown(0) TCGA-2F-A9KO-01 22 26692999 26692999 G A SEZ6L Missense_Mutation p.R372Q 0.12 tolerated(0.44) possibly_damaging(0.854) TCGA-2F-A9KO-01 22 29684693 29684693 G C EWSR1 Missense_Mutation p.D304H 0.17 deleterious(0) unknown(0) TCGA-2F-A9KO-01 22 30812056 30812056 C T SEC14L2 Silent p.L297L 0.16 TCGA-2F-A9KO-01 22 32108385 32108385 C G PRR14L Missense_Mutation p.D1814H 0.33 deleterious(0.03) benign(0.206) TCGA-2F-A9KO-01 22 40080465 40080465 C G CACNA1I Missense_Mutation p.L1997V 0.24 tolerated(0.11) benign(0.364) TCGA-2F-A9KO-01 22 40719265 40719265 G C TNRC6B 3'UTR 0.13 TCGA-2F-A9KO-01 22 40798149 40798149 G C SGSM3 Missense_Mutation p.E33Q 0.17 tolerated(0.28) benign(0.002) TCGA-2F-A9KO-01 22 41914570 41914570 C T ACO2 Silent p.L342L 0.12 TCGA-2F-A9KO-01 22 42564660 42564660 C T TCF20 Silent p.%3D 0.35 TCGA-2F-A9KO-01 22 42968461 42968461 G A SERHL2 Missense_Mutation p.D251N 0.13 tolerated(0.53) benign(0.005) TCGA-2F-A9KO-01 22 45726591 45726591 C T FAM118A Silent p.V210V 0.23 TCGA-2F-A9KO-01 2 127821577 127821577 G C BIN1 Missense_Mutation p.I210M 0.19 tolerated(0.15) benign(0.016) TCGA-2F-A9KO-01 2 1520731 1520731 C T TPO Silent p.L865L 0.10 TCGA-2F-A9KO-01 2 152711869 152711869 C G CACNB4 Missense_Mutation p.E297Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KO-01 2 158182010 158182010 G A ERMN Silent p.L62L 0.14 TCGA-2F-A9KO-01 2 173351811 173351811 G C ITGA6 Missense_Mutation p.E639Q 0.27 tolerated(0.74) benign(0.008) TCGA-2F-A9KO-01 2 178483360 178483360 C A TTC30A Missense_Mutation p.D24Y 0.33 deleterious(0) possibly_damaging(0.626) TCGA-2F-A9KO-01 2 179476135 179476135 C T TTN Missense_Mutation p.E16941K 0.33 TCGA-2F-A9KO-01 2 179498312 179498312 T C TTN Silent p.V14258V 0.16 TCGA-2F-A9KO-01 2 20145726 20145726 G C WDR35 Missense_Mutation p.L567V 0.14 deleterious(0) probably_damaging(0.99) TCGA-2F-A9KO-01 2 201462144 201462144 G A AOX1 Silent p.L75L 0.21 TCGA-2F-A9KO-01 2 201503027 201503027 T A AOX1 Splice_Site p.X856_splice 0.29 TCGA-2F-A9KO-01 2 202003187 202003187 C T CFLAR Intron 0.16 TCGA-2F-A9KO-01 2 20205566 20205566 G T MATN3 Missense_Mutation p.F243L 0.64 deleterious(0.01) benign(0.198) TCGA-2F-A9KO-01 2 202899764 202899764 G A FZD7 Missense_Mutation p.E132K 0.33 tolerated(0.06) possibly_damaging(0.903) TCGA-2F-A9KO-01 2 204281636 204281636 G C ABI2 Missense_Mutation p.D362H 0.12 deleterious(0.01) possibly_damaging(0.569) TCGA-2F-A9KO-01 2 215914405 215914405 G C ABCA12 Missense_Mutation p.S213C 0.27 deleterious(0) possibly_damaging(0.606) TCGA-2F-A9KO-01 2 216809708 216809708 C T MREG Missense_Mutation p.A175T 0.27 tolerated(0.28) benign(0.008) TCGA-2F-A9KO-01 2 219525667 219525667 C T BCS1L 5'UTR 0.15 TCGA-2F-A9KO-01 2 220079684 220079684 G A ABCB6 Silent p.L425L 0.42 TCGA-2F-A9KO-01 2 241705144 241705144 G A KIF1A Missense_Mutation p.P584L 0.30 deleterious(0.02) benign(0.049) TCGA-2F-A9KO-01 2 242148969 242148969 C T ANO7 Silent p.I480I 0.43 TCGA-2F-A9KO-01 2 27745440 27745440 G C GCKR Missense_Mutation p.Q562H 0.45 tolerated(0.08) benign(0.009) TCGA-2F-A9KO-01 2 27887292 27887292 G A SLC4A1AP Missense_Mutation p.D225N 0.13 tolerated(0.16) benign(0.276) TCGA-2F-A9KO-01 2 51254932 51254932 C T NRXN1 Silent p.P160P 0.40 TCGA-2F-A9KO-01 2 55561232 55561232 C G CCDC88A Missense_Mutation p.E909Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-2F-A9KO-01 2 62063219 62063219 C G FAM161A Missense_Mutation p.E593Q 0.44 deleterious(0.02) probably_damaging(0.986) TCGA-2F-A9KO-01 2 74441331 74441331 G A MTHFD2 Missense_Mutation p.V339M 0.51 tolerated_low_confidence(0.13) benign(0.031) TCGA-2F-A9KO-01 2 75929431 75929431 C G GCFC2 Missense_Mutation p.K171N 0.49 deleterious(0.01) benign(0.305) TCGA-2F-A9KO-01 2 89084343 89084343 C G ANKRD36BP2 RNA 0.69 TCGA-2F-A9KO-01 2 99234707 99234707 G A UNC50 Silent p.L240L 0.24 TCGA-2F-A9KO-01 3 121575857 121575857 G A EAF2 Splice_Site p.X113_splice 0.13 TCGA-2F-A9KO-01 3 126748790 126748790 G C PLXNA1 Missense_Mutation p.E1648D 0.20 tolerated(0.21) probably_damaging(0.997) TCGA-2F-A9KO-01 3 128181968 128181968 C T DNAJB8 Missense_Mutation p.E41K 0.26 deleterious(0) probably_damaging(0.957) TCGA-2F-A9KO-01 3 130312094 130312094 C T COL6A6 Nonsense_Mutation p.Q1490* 0.14 TCGA-2F-A9KO-01 3 13896086 13896086 C T WNT7A Silent p.E171E 0.13 TCGA-2F-A9KO-01 3 142051264 142051264 C T XRN1 Missense_Mutation p.R1391K 0.21 tolerated_low_confidence(0.33) benign(0.001) TCGA-2F-A9KO-01 3 150127594 150127594 C T TSC22D2 Nonsense_Mutation p.Q153* 0.13 TCGA-2F-A9KO-01 3 16306437 16306437 G C DPH3 5'UTR 0.22 TCGA-2F-A9KO-01 3 167293820 167293820 G T WDR49 Missense_Mutation p.F124L 0.11 tolerated(0.05) benign(0.213) TCGA-2F-A9KO-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.12 tolerated(0.36) benign(0.4) TCGA-2F-A9KO-01 3 196612556 196612556 G A SENP5 Missense_Mutation p.M168I 0.23 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-2F-A9KO-01 3 21792438 21792438 G A ZNF385D 5'UTR 0.27 TCGA-2F-A9KO-01 3 24169144 24169144 C T THRB Silent p.L330L 0.33 TCGA-2F-A9KO-01 3 28379434 28379434 G A AZI2 Nonsense_Mutation p.Q145* 0.30 TCGA-2F-A9KO-01 3 36587698 36587698 G A STAC Missense_Mutation p.E376K 0.12 tolerated(0.31) benign(0.429) TCGA-2F-A9KO-01 3 37058996 37058996 G C MLH1 Splice_Site p.X264_splice 0.15 TCGA-2F-A9KO-01 3 38359853 38359853 C G SLC22A14 3'UTR 0.29 TCGA-2F-A9KO-01 3 39373966 39373966 C T CCR8 Silent p.F48F 0.23 TCGA-2F-A9KO-01 3 39374151 39374151 C G CCR8 Missense_Mutation p.S110C 0.17 deleterious(0.04) possibly_damaging(0.71) TCGA-2F-A9KO-01 3 43388916 43388916 C T SNRK Nonsense_Mutation p.Q389* 0.10 TCGA-2F-A9KO-01 3 45812744 45812744 G A SLC6A20 Silent p.F300F 0.27 TCGA-2F-A9KO-01 3 47050035 47050035 C T NBEAL2 Missense_Mutation p.S2635L 0.19 deleterious(0) probably_damaging(0.973) TCGA-2F-A9KO-01 3 47324545 47324545 G C KLHL18 Missense_Mutation p.E30D 0.30 tolerated(0.16) benign(0.004) TCGA-2F-A9KO-01 3 47604191 47604191 C G CSPG5 Missense_Mutation p.E534Q 0.13 deleterious(0.01) probably_damaging(1) TCGA-2F-A9KO-01 3 48605171 48605171 G T COL7A1 Missense_Mutation p.P2652H 0.17 probably_damaging(0.998) TCGA-2F-A9KO-01 3 49740124 49740124 C G RNF123 Missense_Mutation p.S563C 0.30 tolerated(0.11) possibly_damaging(0.717) TCGA-2F-A9KO-01 3 52825950 52825950 C G ITIH1 3'UTR 0.13 TCGA-2F-A9KO-01 3 7782073 7782073 T G GRM7 Missense_Mutation p.Y910D 0.16 deleterious_low_confidence(0) benign(0.133) TCGA-2F-A9KO-01 3 93733675 93733675 T C STX19 Missense_Mutation p.I147V 0.11 tolerated(0.55) benign(0.009) TCGA-2F-A9KO-01 3 9989042 9989042 C A PRRT3 Silent p.S605S 0.25 TCGA-2F-A9KO-01 3 9989099 9989099 G A PRRT3 Silent p.L586L 0.26 TCGA-2F-A9KO-01 4 115544702 115544702 C T UGT8 Silent p.Y222Y 0.19 TCGA-2F-A9KO-01 4 118006429 118006429 C G TRAM1L1 Missense_Mutation p.E41Q 0.17 tolerated(0.46) benign(0.052) TCGA-2F-A9KO-01 4 119644623 119644623 G C SEC24D 3'UTR 0.06 TCGA-2F-A9KO-01 4 121957806 121957806 A T NDNF Silent p.T440T 0.11 TCGA-2F-A9KO-01 4 123252623 123252623 G C KIAA1109 Missense_Mutation p.E3798Q 0.22 possibly_damaging(0.455) TCGA-2F-A9KO-01 4 126242013 126242013 G T FAT4 Nonsense_Mutation p.E1483* 0.16 TCGA-2F-A9KO-01 4 134072903 134072903 G A PCDH10 Silent p.L536L 0.12 TCGA-2F-A9KO-01 4 147215230 147215230 G C SLC10A7 Missense_Mutation p.I191M 0.26 tolerated(0.13) benign(0.062) TCGA-2F-A9KO-01 4 153897151 153897151 G A FHDC1 Missense_Mutation p.R903H 0.10 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KO-01 4 155487089 155487089 C G FGB Missense_Mutation p.Q82E 0.21 tolerated(0.48) benign(0.004) TCGA-2F-A9KO-01 4 164247358 164247358 G A NPY1R Missense_Mutation p.P117S 0.39 tolerated(0.95) benign(0.023) TCGA-2F-A9KO-01 4 170608844 170608844 G C CLCN3 Missense_Mutation p.M118I 0.10 tolerated(0.18) benign(0.003) TCGA-2F-A9KO-01 4 184129224 184129224 G A WWC2 Silent p.V120V 0.11 TCGA-2F-A9KO-01 4 184431485 184431485 G A ING2 Missense_Mutation p.D75N 0.42 tolerated(0.06) probably_damaging(0.999) TCGA-2F-A9KO-01 4 184431737 184431737 G A ING2 Missense_Mutation p.E159K 0.35 deleterious(0.02) benign(0.368) TCGA-2F-A9KO-01 4 184612493 184612493 G A TRAPPC11 Missense_Mutation p.E640K 0.08 tolerated(0.6) benign(0.128) TCGA-2F-A9KO-01 4 185012381 185012381 G C ENPP6 Silent p.V424V 0.10 TCGA-2F-A9KO-01 4 187524927 187524927 G A FAT1 Nonsense_Mutation p.Q3585* 0.36 TCGA-2F-A9KO-01 4 187540591 187540591 G C FAT1 Silent p.L2383L 0.11 TCGA-2F-A9KO-01 4 30723146 30723146 C A PCDH7 Silent p.L34L 0.17 TCGA-2F-A9KO-01 4 36149306 36149306 G A ARAP2 Silent p.L1021L 0.15 TCGA-2F-A9KO-01 4 38126707 38126707 G A TBC1D1 Silent p.T1029T 0.18 TCGA-2F-A9KO-01 4 38830143 38830143 G A TLR6 Silent p.L318L 0.19 TCGA-2F-A9KO-01 4 41648549 41648549 C A LIMCH1 Missense_Mutation p.S435Y 0.19 deleterious(0) possibly_damaging(0.724) TCGA-2F-A9KO-01 4 4322864 4322864 G A ZBTB49 Missense_Mutation p.D707N 0.12 tolerated(0.08) benign(0.148) TCGA-2F-A9KO-01 4 44624540 44624540 G A YIPF7 Missense_Mutation p.S245L 0.18 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KO-01 4 46995489 46995489 C G GABRA4 5'UTR 0.32 TCGA-2F-A9KO-01 4 76813007 76813007 G A PPEF2 Silent p.V60V 0.09 TCGA-2F-A9KO-01 4 77003150 77003150 G C ART3 Missense_Mutation p.K81N 0.17 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 4 77003553 77003553 G C ART3 Missense_Mutation p.D216H 0.22 tolerated(0.49) probably_damaging(0.964) TCGA-2F-A9KO-01 4 77977120 77977120 G A CCNI Missense_Mutation p.H152Y 0.10 deleterious(0.03) possibly_damaging(0.533) TCGA-2F-A9KO-01 4 83772709 83772709 G C SEC31A Missense_Mutation p.Q735E 0.30 deleterious(0.02) benign(0.142) TCGA-2F-A9KO-01 4 85525405 85525405 A G CDS1 Missense_Mutation p.I43V 0.17 tolerated(0.37) benign(0) TCGA-2F-A9KO-01 4 88414976 88414976 C T SPARCL1 Missense_Mutation p.D326N 0.15 tolerated(0.12) benign(0.384) TCGA-2F-A9KO-01 4 89304426 89304426 G C HERC6 Missense_Mutation p.E85Q 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-2F-A9KO-01 4 89625430 89625430 G C HERC3 Missense_Mutation p.E947Q 0.12 tolerated(0.07) benign(0.226) TCGA-2F-A9KO-01 4 90171358 90171358 C G GPRIN3 5'UTR 0.08 TCGA-2F-A9KO-01 4 99055545 99055545 C G STPG2 Missense_Mutation p.E59Q 0.26 tolerated(0.18) possibly_damaging(0.719) TCGA-2F-A9KO-01 4 99960563 99960563 C G METAP1 Missense_Mutation p.Q127E 0.24 tolerated(0.45) possibly_damaging(0.74) TCGA-2F-A9KO-01 5 108436119 108436119 G A FER Silent p.L649L 0.14 TCGA-2F-A9KO-01 5 110432815 110432815 G A WDR36 Missense_Mutation p.D133N 0.14 tolerated(0.08) possibly_damaging(0.62) TCGA-2F-A9KO-01 5 112312479 112312479 C A DCP2 5'UTR 0.14 TCGA-2F-A9KO-01 5 112364650 112364650 C G MCC Missense_Mutation p.D954H 0.14 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KO-01 5 127622437 127622437 G A FBN2 Nonsense_Mutation p.R2329* 0.10 TCGA-2F-A9KO-01 5 127670979 127670979 C G FBN2 Missense_Mutation p.E1286Q 0.11 deleterious(0) possibly_damaging(0.734) TCGA-2F-A9KO-01 5 128990083 128990083 G C ADAMTS19 Missense_Mutation p.C748S 0.15 deleterious(0.02) possibly_damaging(0.829) TCGA-2F-A9KO-01 5 133473792 133473792 C T TCF7 Missense_Mutation p.L162F 0.15 tolerated(0.36) probably_damaging(0.986) TCGA-2F-A9KO-01 5 134002676 134002676 C T SEC24A Silent p.V243V 0.19 TCGA-2F-A9KO-01 5 137506827 137506827 C G BRD8 Missense_Mutation p.E87Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 5 140175618 140175618 C T PCDHA2 Missense_Mutation p.L357F 0.10 deleterious_low_confidence(0.01) benign(0.153) TCGA-2F-A9KO-01 5 140175628 140175628 C T PCDHA2 Missense_Mutation p.S360L 0.11 tolerated_low_confidence(0.24) benign(0.001) TCGA-2F-A9KO-01 5 140229713 140229713 C A PCDHA9 Missense_Mutation p.L545M 0.16 deleterious_low_confidence(0.04) probably_damaging(0.971) TCGA-2F-A9KO-01 5 140516029 140516029 A T PCDHB5 Missense_Mutation p.D338V 0.14 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2F-A9KO-01 5 140559118 140559118 C T PCDHB8 Silent p.L501L 0.09 TCGA-2F-A9KO-01 5 140724876 140724876 G C PCDHGA3 Missense_Mutation p.D426H 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2F-A9KO-01 5 141993686 141993686 C T FGF1 Missense_Mutation p.E3K 0.12 tolerated(0.07) probably_damaging(0.985) TCGA-2F-A9KO-01 5 142150446 142150446 C T ARHGAP26 Silent p.I40I 0.12 TCGA-2F-A9KO-01 5 14482837 14482837 G C TRIO Missense_Mutation p.K2204N 0.29 probably_damaging(0.997) TCGA-2F-A9KO-01 5 14602366 14602366 C G FAM105A Silent p.L141L 0.17 TCGA-2F-A9KO-01 5 146752738 146752738 G A STK32A Missense_Mutation p.E262K 0.18 tolerated(0.55) possibly_damaging(0.713) TCGA-2F-A9KO-01 5 150923363 150923363 C G FAT2 Missense_Mutation p.C2442S 0.10 possibly_damaging(0.861) TCGA-2F-A9KO-01 5 154173482 154173482 G A LARP1 Missense_Mutation p.G254S 0.14 tolerated(0.15) benign(0.225) TCGA-2F-A9KO-01 5 170738600 170738600 G A TLX3 Silent p.V291V 0.30 TCGA-2F-A9KO-01 5 176882984 176882984 C G PRR7 Silent p.L229L 0.38 TCGA-2F-A9KO-01 5 178139578 178139578 C G ZNF354A Missense_Mutation p.G434A 0.15 deleterious(0) probably_damaging(0.995) TCGA-2F-A9KO-01 5 179004080 179004080 G C RUFY1 Missense_Mutation p.G278A 0.18 deleterious(0.04) benign(0.009) TCGA-2F-A9KO-01 5 179290627 179290627 C T TBC1D9B Missense_Mutation p.V1192I 0.13 tolerated_low_confidence(0.79) benign(0.008) TCGA-2F-A9KO-01 5 22078694 22078694 A G CDH12 Missense_Mutation p.L31S 0.39 tolerated(0.81) benign(0) TCGA-2F-A9KO-01 5 32390503 32390503 C T ZFR Missense_Mutation p.E674K 0.14 deleterious(0.03) unknown(0) TCGA-2F-A9KO-01 5 33937088 33937088 G A RXFP3 Silent p.R81R 0.10 TCGA-2F-A9KO-01 5 35910599 35910599 T C CAPSL Missense_Mutation p.K62E 0.13 tolerated(1) benign(0.002) TCGA-2F-A9KO-01 5 40681608 40681608 C A PTGER4 Missense_Mutation p.F171L 0.19 deleterious(0) possibly_damaging(0.897) TCGA-2F-A9KO-01 5 54581186 54581186 C A DHX29 Nonsense_Mutation p.E431* 0.10 TCGA-2F-A9KO-01 5 54640440 54640440 G C SKIV2L2 Missense_Mutation p.D333H 0.18 deleterious(0) probably_damaging(0.966) TCGA-2F-A9KO-01 5 6620274 6620274 C A NSUN2 Missense_Mutation p.D254Y 0.09 deleterious(0) possibly_damaging(0.691) TCGA-2F-A9KO-01 5 66396385 66396385 G A MAST4 Silent p.R345R 0.17 TCGA-2F-A9KO-01 5 70945948 70945948 G C MCCC2 Missense_Mutation p.E476Q 0.08 deleterious_low_confidence(0.01) benign(0.08) TCGA-2F-A9KO-01 5 79945222 79945222 G A DHFR Silent p.L76L 0.16 TCGA-2F-A9KO-01 5 90041535 90041535 G T GPR98 Nonsense_Mutation p.E3633* 0.20 TCGA-2F-A9KO-01 6 100009278 100009278 C T CCNC Missense_Mutation p.A87T 0.25 deleterious(0) probably_damaging(0.928) TCGA-2F-A9KO-01 6 10398662 10398662 C G TFAP2A Missense_Mutation p.K434N 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-2F-A9KO-01 6 10419751 10419751 C A TFAP2A 5'Flank 0.15 TCGA-2F-A9KO-01 6 105404987 105404987 G C LIN28B 5'UTR 0.17 TCGA-2F-A9KO-01 6 110551168 110551168 C T CDC40 Missense_Mutation p.S525L 0.15 deleterious(0) probably_damaging(0.989) TCGA-2F-A9KO-01 6 111650798 111650798 C A REV3L Silent p.L2726L 0.18 TCGA-2F-A9KO-01 6 116949361 116949361 C T RSPH4A Silent p.V497V 0.08 TCGA-2F-A9KO-01 6 128134259 128134259 C G THEMIS Missense_Mutation p.L509F 0.13 deleterious(0.03) benign(0.028) TCGA-2F-A9KO-01 6 128134427 128134427 G A THEMIS Silent p.F453F 0.16 TCGA-2F-A9KO-01 6 129963118 129963118 G C ARHGAP18 Missense_Mutation p.I53M 0.19 tolerated(0.16) benign(0.003) TCGA-2F-A9KO-01 6 136960710 136960710 G C MAP3K5 Missense_Mutation p.I635M 0.41 tolerated(0.09) benign(0.299) TCGA-2F-A9KO-01 6 137466659 137466659 G C IL22RA2 3'UTR 0.15 TCGA-2F-A9KO-01 6 144843165 144843165 G C UTRN Missense_Mutation p.R1864T 0.14 tolerated(0.15) benign(0.001) TCGA-2F-A9KO-01 6 149846284 149846284 C G PPIL4 Missense_Mutation p.E289Q 0.24 deleterious(0.02) possibly_damaging(0.612) TCGA-2F-A9KO-01 6 157502215 157502215 G C ARID1B Missense_Mutation p.R1083T 0.20 possibly_damaging(0.876) TCGA-2F-A9KO-01 6 157525118 157525118 C G ARID1B Missense_Mutation p.F1671L 0.18 probably_damaging(0.981) TCGA-2F-A9KO-01 6 158924856 158924856 G C TULP4 Missense_Mutation p.Q1387H 0.31 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-2F-A9KO-01 6 160109251 160109251 G C SOD2 Missense_Mutation p.L84V 0.11 deleterious(0.01) possibly_damaging(0.839) TCGA-2F-A9KO-01 6 26250797 26250797 C T HIST1H3F Missense_Mutation p.G13S 0.09 tolerated_low_confidence(0.07) benign(0) TCGA-2F-A9KO-01 6 27114534 27114534 G C HIST1H2BK Missense_Mutation p.S15W 0.10 deleterious_low_confidence(0.01) benign(0.131) TCGA-2F-A9KO-01 6 27115132 27115132 G A HIST1H2AH Silent p.K75K 0.13 TCGA-2F-A9KO-01 6 28056923 28056923 G A ZNF165 Missense_Mutation p.G378E 0.42 deleterious(0) probably_damaging(0.961) TCGA-2F-A9KO-01 6 29693324 29693324 G C HLA-F Missense_Mutation p.W329C 0.53 deleterious_low_confidence(0.04) probably_damaging(0.95) TCGA-2F-A9KO-01 6 30614248 30614248 C G ATAT1 Missense_Mutation p.S353C 0.33 tolerated(0.11) benign(0.002) TCGA-2F-A9KO-01 6 30614923 30614923 C T C6orf136 5'UTR 0.23 TCGA-2F-A9KO-01 6 31105959 31105959 G C PSORS1C2 Silent p.L60L 0.12 TCGA-2F-A9KO-01 6 31600295 31600295 C A PRRC2A Missense_Mutation p.S1282Y 0.19 unknown(0) TCGA-2F-A9KO-01 6 31915602 31915602 G C CFB Missense_Mutation p.E750Q 0.44 tolerated(0.18) benign(0.062) TCGA-2F-A9KO-01 6 31916735 31916735 G A CFB Missense_Mutation p.D891N 0.19 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 6 32085711 32085711 C A ATF6B Missense_Mutation p.G450V 0.35 tolerated(0.14) possibly_damaging(0.739) TCGA-2F-A9KO-01 6 32169124 32169124 C A NOTCH4 Silent p.L1303L 0.20 TCGA-2F-A9KO-01 6 33146470 33146470 C T COL11A2 Missense_Mutation p.E483K 0.15 possibly_damaging(0.828) TCGA-2F-A9KO-01 6 33414463 33414463 A - SYNGAP1 Frame_Shift_Del p.I1233Sfs*2 0.39 TCGA-2F-A9KO-01 6 36185777 36185777 G A BRPF3 Missense_Mutation p.E1025K 0.14 tolerated(0.71) benign(0.058) TCGA-2F-A9KO-01 6 36652057 36652058 - G CDKN1A Frame_Shift_Ins p.D62* 0.37 TCGA-2F-A9KO-01 6 37467607 37467607 G A CCDC167 Silent p.V11V 0.26 TCGA-2F-A9KO-01 6 42689953 42689953 G A PRPH2 Silent p.F40F 0.15 TCGA-2F-A9KO-01 6 42930880 42930880 C T GNMT Silent p.V174V 0.17 TCGA-2F-A9KO-01 6 42933441 42933441 C G PEX6 Missense_Mutation p.D817H 0.15 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 6 43154764 43154764 G C CUL9 Missense_Mutation p.E440Q 0.34 deleterious(0.04) possibly_damaging(0.653) TCGA-2F-A9KO-01 6 51523771 51523771 G C PKHD1 Nonsense_Mutation p.S3718* 0.30 TCGA-2F-A9KO-01 6 51771089 51771089 G C PKHD1 Silent p.L2244L 0.08 TCGA-2F-A9KO-01 6 54173570 54173570 C T TINAG Silent p.F74F 0.26 TCGA-2F-A9KO-01 6 89616100 89616100 C T RNGTT Missense_Mutation p.E143K 0.07 deleterious(0) probably_damaging(0.976) TCGA-2F-A9KO-01 6 90090015 90090015 G A RRAGD Silent p.I172I 0.25 TCGA-2F-A9KO-01 6 90503615 90503615 C G MDN1 Missense_Mutation p.E241Q 0.17 benign(0.096) TCGA-2F-A9KO-01 6 96999337 96999337 C G UFL1 Nonsense_Mutation p.S616* 0.09 TCGA-2F-A9KO-01 6 99823857 99823857 C G COQ3 Missense_Mutation p.D230H 0.22 tolerated(0.06) benign(0.33) TCGA-2F-A9KO-01 6 99930457 99930457 G T USP45 Intron 0.17 TCGA-2F-A9KO-01 7 100877609 100877609 G T CLDN15 Missense_Mutation p.S111Y 0.20 deleterious(0.03) benign(0.396) TCGA-2F-A9KO-01 7 101918591 101918591 G C CUX1 Missense_Mutation p.Q506H 0.11 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 7 107592559 107592559 C G LAMB1 Missense_Mutation p.Q1063H 0.15 tolerated(0.18) probably_damaging(0.988) TCGA-2F-A9KO-01 7 107688370 107688370 G A LAMB4 Missense_Mutation p.R1437C 0.14 deleterious(0) benign(0.208) TCGA-2F-A9KO-01 7 107717510 107717510 C T LAMB4 Splice_Site p.X668_splice 0.19 TCGA-2F-A9KO-01 7 116339307 116339307 C G MET Missense_Mutation p.L57V 0.10 tolerated(1) benign(0.023) TCGA-2F-A9KO-01 7 116863026 116863026 C G ST7 Missense_Mutation p.Q584E 0.11 deleterious_low_confidence(0) benign(0) TCGA-2F-A9KO-01 7 127014080 127014080 G C ZNF800 Nonsense_Mutation p.S437* 0.17 TCGA-2F-A9KO-01 7 132192484 132192484 G A PLXNA4 Silent p.G323G 0.08 TCGA-2F-A9KO-01 7 135304345 135304345 C G NUP205 Missense_Mutation p.P1380A 0.12 tolerated(1) benign(0.001) TCGA-2F-A9KO-01 7 143018586 143018586 G C CLCN1 Missense_Mutation p.G188R 0.07 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 7 143090897 143090897 G A EPHA1 Silent p.L855L 0.16 TCGA-2F-A9KO-01 7 1482086 1482086 G A MICALL2 Nonsense_Mutation p.Q485* 0.12 TCGA-2F-A9KO-01 7 149129916 149129916 C G ZNF777 Missense_Mutation p.E483Q 0.29 tolerated(0.07) benign(0.031) TCGA-2F-A9KO-01 7 150647216 150647216 G C KCNH2 Intron 0.08 TCGA-2F-A9KO-01 7 150737372 150737372 C T ABCB8 Missense_Mutation p.S412F 0.10 deleterious(0.03) possibly_damaging(0.781) TCGA-2F-A9KO-01 7 151853410 151853410 G C KMT2C Missense_Mutation p.P3898A 0.16 benign(0.254) TCGA-2F-A9KO-01 7 151878184 151878184 G A KMT2C Missense_Mutation p.A2254V 0.12 benign(0.003) TCGA-2F-A9KO-01 7 151921139 151921139 C G KMT2C Missense_Mutation p.R1095T 0.49 probably_damaging(0.978) TCGA-2F-A9KO-01 7 23157450 23157450 C T KLHL7 Intron 0.43 TCGA-2F-A9KO-01 7 31104542 31104542 T - ADCYAP1R1 Frame_Shift_Del p.S50Pfs*57 0.29 TCGA-2F-A9KO-01 7 31146188 31146188 C T ADCYAP1R1 Missense_Mutation p.P461S 0.10 tolerated(0.22) possibly_damaging(0.685) TCGA-2F-A9KO-01 7 37960368 37960368 C T EPDR1 5'UTR 0.17 TCGA-2F-A9KO-01 7 42088199 42088199 G A GLI3 Silent p.F190F 0.09 TCGA-2F-A9KO-01 7 43688228 43688228 G A COA1 5'UTR 0.31 TCGA-2F-A9KO-01 7 43916245 43916245 G C URGCP 3'UTR 0.25 TCGA-2F-A9KO-01 7 43916762 43916762 C A URGCP Missense_Mutation p.R767I 0.12 deleterious(0.02) possibly_damaging(0.891) TCGA-2F-A9KO-01 7 50129261 50129261 C T ZPBP Missense_Mutation p.D58N 0.10 tolerated(0.57) benign(0.026) TCGA-2F-A9KO-01 7 56022744 56022744 G A MRPS17 Missense_Mutation p.G89E 0.14 deleterious(0) possibly_damaging(0.598) TCGA-2F-A9KO-01 7 64166775 64166775 G A ZNF107 Silent p.L31L 0.12 TCGA-2F-A9KO-01 7 65548157 65548157 G A ASL Missense_Mutation p.E148K 0.09 tolerated(0.2) benign(0.041) TCGA-2F-A9KO-01 7 72281217 72281217 G A TYW1B Missense_Mutation p.A91V 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-2F-A9KO-01 7 75070254 75070254 C G POM121C Missense_Mutation p.D69H 0.10 deleterious(0) probably_damaging(0.965) TCGA-2F-A9KO-01 7 84666306 84666306 C T SEMA3D Missense_Mutation p.D364N 0.12 deleterious(0.01) probably_damaging(0.967) TCGA-2F-A9KO-01 7 87035681 87035681 G A ABCB4 Missense_Mutation p.R1144W 0.05 deleterious(0.01) possibly_damaging(0.748) TCGA-2F-A9KO-01 7 95820470 95820470 C G SLC25A13 Missense_Mutation p.K235N 0.06 deleterious(0.01) possibly_damaging(0.822) TCGA-2F-A9KO-01 7 98655043 98655043 C G SMURF1 Missense_Mutation p.G112A 0.04 deleterious(0.02) probably_damaging(0.942) TCGA-2F-A9KO-01 7 99097547 99097547 G A ZNF394 Missense_Mutation p.S57L 0.25 tolerated(0.65) benign(0) TCGA-2F-A9KO-01 7 99314828 99314828 C G CYP3A7 Missense_Mutation p.E165Q 0.12 tolerated(0.11) benign(0.028) TCGA-2F-A9KO-01 8 101608973 101608973 G C SNX31 Missense_Mutation p.S291C 0.36 tolerated(0.12) benign(0.021) TCGA-2F-A9KO-01 8 102381647 102381647 G A NACAP1 RNA 0.11 TCGA-2F-A9KO-01 8 102611287 102611287 G C GRHL2 Missense_Mutation p.D336H 0.09 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 8 103311734 103311734 G C UBR5 Missense_Mutation p.L1050V 0.11 tolerated(0.37) benign(0.107) TCGA-2F-A9KO-01 8 121220591 121220591 G A COL14A1 Missense_Mutation p.E438K 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-2F-A9KO-01 8 125132041 125132041 G A FER1L6 3'UTR 0.10 TCGA-2F-A9KO-01 8 143782008 143782008 G C LY6K Silent p.L21L 0.31 TCGA-2F-A9KO-01 8 144688028 144688028 C T PYCRL Missense_Mutation p.E235K 0.09 tolerated(0.21) benign(0.005) TCGA-2F-A9KO-01 8 144993498 144993498 C G PLEC Missense_Mutation p.E3634D 0.18 benign(0.016) TCGA-2F-A9KO-01 8 145745189 145745189 C T LRRC14 Missense_Mutation p.P27L 0.10 deleterious(0.04) probably_damaging(1) TCGA-2F-A9KO-01 8 145745822 145745822 C G LRRC14 Missense_Mutation p.S177C 0.15 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KO-01 8 17554980 17554980 G A MTUS1 Intron 0.16 TCGA-2F-A9KO-01 8 21985168 21985168 G A HR Missense_Mutation p.P263S 0.13 tolerated(0.52) benign(0.002) TCGA-2F-A9KO-01 8 22548613 22548613 G C EGR3 Silent p.A179A 0.18 TCGA-2F-A9KO-01 8 27255125 27255125 G A PTK2B Silent p.L8L 0.17 TCGA-2F-A9KO-01 8 29195959 29195959 C T DUSP4 Silent p.R213R 0.13 TCGA-2F-A9KO-01 8 38122407 38122407 G A PPAPDC1B Intron 0.33 TCGA-2F-A9KO-01 8 41122824 41122824 G A SFRP1 Silent p.L269L 0.12 TCGA-2F-A9KO-01 8 55049831 55049831 C T MRPL15 Silent p.F89F 0.09 TCGA-2F-A9KO-01 8 56015176 56015176 G A XKR4 Missense_Mutation p.G43E 0.21 deleterious_low_confidence(0.02) benign(0) TCGA-2F-A9KO-01 8 61765757 61765757 C T CHD7 Missense_Mutation p.S2158L 0.36 benign(0.01) TCGA-2F-A9KO-01 8 66631569 66631569 C G PDE7A Missense_Mutation p.E469Q 0.08 tolerated_low_confidence(0.22) benign(0.002) TCGA-2F-A9KO-01 8 67012265 67012265 G C DNAJC5B Nonstop_Mutation p.*200Sext*2 0.12 TCGA-2F-A9KO-01 8 68255431 68255431 G C ARFGEF1 Missense_Mutation p.S31C 0.05 deleterious(0.02) possibly_damaging(0.827) TCGA-2F-A9KO-01 8 70550998 70550998 G A SULF1 Missense_Mutation p.R819Q 0.15 deleterious(0.04) benign(0.205) TCGA-2F-A9KO-01 8 77690569 77690569 G C ZFHX4 Missense_Mutation p.Q1073H 0.12 benign(0.387) TCGA-2F-A9KO-01 8 95521983 95521983 C A KIAA1429 Missense_Mutation p.G1271V 0.06 tolerated(0.16) benign(0.242) TCGA-2F-A9KO-01 9 107298745 107298745 G C OR13C3 Nonsense_Mutation p.S117* 0.27 TCGA-2F-A9KO-01 9 120475520 120475520 C T TLR4 Silent p.L372L 0.20 TCGA-2F-A9KO-01 9 127644113 127644113 C G GOLGA1 Missense_Mutation p.E696Q 0.06 tolerated(0.13) possibly_damaging(0.864) TCGA-2F-A9KO-01 9 127644215 127644215 C G GOLGA1 Missense_Mutation p.E662Q 0.13 tolerated(0.08) possibly_damaging(0.821) TCGA-2F-A9KO-01 9 128113053 128113053 G C GAPVD1 Missense_Mutation p.K1184N 0.38 tolerated(0.07) possibly_damaging(0.473) TCGA-2F-A9KO-01 9 129958857 129958857 G A RALGPS1 Missense_Mutation p.R381Q 0.33 tolerated(0.32) benign(0.034) TCGA-2F-A9KO-01 9 130416005 130416005 G A STXBP1 Silent p.V33V 0.27 TCGA-2F-A9KO-01 9 131870321 131870321 C G CRAT Missense_Mutation p.L21F 0.32 tolerated(0.14) benign(0.024) TCGA-2F-A9KO-01 9 135739144 135739144 G T AK8 Missense_Mutation p.L81M 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-2F-A9KO-01 9 14737434 14737434 C G FREM1 Missense_Mutation p.R2167T 0.54 tolerated(0.27) benign(0.026) TCGA-2F-A9KO-01 9 14759863 14759863 C T FREM1 Silent p.Q1747Q 0.36 TCGA-2F-A9KO-01 9 20990271 20990271 G A FOCAD Silent p.R1718R 0.57 TCGA-2F-A9KO-01 9 27212749 27212749 C A TEK Missense_Mutation p.L911M 0.09 deleterious(0) probably_damaging(1) TCGA-2F-A9KO-01 9 35382429 35382429 C T UNC13B Silent p.I828I 0.49 TCGA-2F-A9KO-01 9 43822654 43822654 G C CNTNAP3B Missense_Mutation p.R403T 0.16 tolerated(0.08) benign(0.063) TCGA-2F-A9KO-01 9 6550816 6550816 G A GLDC Silent p.F852F 0.14 TCGA-2F-A9KO-01 9 71623368 71623368 G A PIP5K1B 3'UTR 0.38 TCGA-2F-A9KO-01 9 77300541 77300541 C A RORB 3'UTR 0.34 TCGA-2F-A9KO-01 9 79840902 79840902 G A VPS13A Missense_Mutation p.E408K 0.17 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KO-01 9 96051800 96051800 G C WNK2 Silent p.L1625L 0.41 TCGA-2F-A9KO-01 X 101096056 101096056 C A NXF5 Missense_Mutation p.D138Y 0.13 deleterious(0) possibly_damaging(0.833) TCGA-2F-A9KO-01 X 102864368 102864368 C T TCEAL3 Nonsense_Mutation p.Q126* 0.18 TCGA-2F-A9KO-01 X 117043973 117043973 G C KLHL13 Silent p.V222V 0.52 TCGA-2F-A9KO-01 X 123514842 123514842 G A TENM1 Silent p.Y2581Y 0.23 TCGA-2F-A9KO-01 X 123538964 123538964 C G TENM1 Missense_Mutation p.E1770Q 0.15 deleterious(0.02) benign(0.013) TCGA-2F-A9KO-01 X 132161288 132161288 C T USP26 Missense_Mutation p.D321N 0.47 tolerated(0.34) benign(0.06) TCGA-2F-A9KO-01 X 133559262 133559262 G C PHF6 Missense_Mutation p.E334Q 0.23 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-2F-A9KO-01 X 138708450 138708450 G A MCF2 Missense_Mutation p.H257Y 0.22 deleterious(0.03) possibly_damaging(0.597) TCGA-2F-A9KO-01 X 1409227 1409227 C G CSF2RA Intron 0.27 TCGA-2F-A9KO-01 X 1409271 1409271 C G CSF2RA Nonsense_Mutation p.S172* 0.30 TCGA-2F-A9KO-01 X 153626647 153626647 C A RPL10 5'UTR 0.40 TCGA-2F-A9KO-01 X 23801421 23801421 C T SAT1 5'UTR 0.43 TCGA-2F-A9KO-01 X 2832772 2832772 G A ARSD Intron 0.11 TCGA-2F-A9KO-01 X 32717355 32717355 G C DMD Silent p.L235L 0.23 TCGA-2F-A9KO-01 X 46359822 46359822 G C ZNF674 Missense_Mutation p.S401C 0.24 tolerated(0.08) probably_damaging(0.971) TCGA-2F-A9KO-01 X 69647194 69647194 G A GDPD2 Missense_Mutation p.E273K 0.41 tolerated(0.05) probably_damaging(0.911) TCGA-2F-A9KO-01 X 70324223 70324223 C A CXorf65 Missense_Mutation p.E117D 0.33 deleterious(0.01) probably_damaging(0.962) TCGA-2F-A9KO-01 X 73744291 73744291 C T SLC16A2 Nonsense_Mutation p.Q225* 0.22 TCGA-2F-A9KO-01 X 86890751 86890751 C G KLHL4 Missense_Mutation p.S634C 0.20 deleterious(0.01) probably_damaging(0.93) TCGA-2F-A9KP-01 10 105174887 105174887 C G PDCD11 Missense_Mutation p.I499M 0.17 tolerated(0.09) possibly_damaging(0.643) TCGA-2F-A9KP-01 10 118404576 118404576 G C PNLIPRP2 Missense_Mutation p.E459Q 0.28 deleterious(0.02) benign(0.162) TCGA-2F-A9KP-01 10 37490228 37490228 G T ANKRD30A Missense_Mutation p.M892I 0.19 tolerated(1) benign(0) TCGA-2F-A9KP-01 10 47087766 47087766 A C NPY4R Missense_Mutation p.N328T 0.15 deleterious(0) probably_damaging(0.992) TCGA-2F-A9KP-01 10 50532043 50532043 G A C10orf71 Missense_Mutation p.E485K 0.15 deleterious(0.01) possibly_damaging(0.869) TCGA-2F-A9KP-01 10 50740961 50740961 C T ERCC6-PGBD3 Missense_Mutation p.C17Y 0.21 tolerated_low_confidence(0.19) benign(0.091) TCGA-2F-A9KP-01 10 95072892 95072892 G A MYOF Missense_Mutation p.P1925L 0.54 deleterious(0.05) benign(0.003) TCGA-2F-A9KP-01 11 106810789 106810789 G A GUCY1A2 Silent p.N201N 0.37 TCGA-2F-A9KP-01 11 117712529 117712529 G A FXYD6 Missense_Mutation p.S50L 0.35 tolerated(0.77) benign(0.004) TCGA-2F-A9KP-01 11 123677024 123677024 G - OR6M1 Frame_Shift_Del p.L12* 0.29 TCGA-2F-A9KP-01 11 3685343 3685343 C G ART1 Missense_Mutation p.S303C 0.41 deleterious(0.01) benign(0.439) TCGA-2F-A9KP-01 11 55405955 55405955 T C OR4P4 Missense_Mutation p.L41S 0.36 deleterious(0.03) benign(0.053) TCGA-2F-A9KP-01 11 67378016 67378016 G A NDUFV1 Silent p.L225L 0.39 TCGA-2F-A9KP-01 11 71850702 71850702 T A FOLR3 Missense_Mutation p.C231S 0.39 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 11 75280091 75280123 CCTCTCGAGCGCCTTGAAAAGCTGCTAACCAAA GCT SERPINH1 In_Frame_Del p.P277_K287delinsA 0.16 TCGA-2F-A9KP-01 11 78204153 78204153 C T NARS2 Missense_Mutation p.E260K 0.33 deleterious(0) probably_damaging(0.98) TCGA-2F-A9KP-01 11 99690436 99690436 G A CNTN5 Missense_Mutation p.A73T 0.31 tolerated_low_confidence(0.11) benign(0.002) TCGA-2F-A9KP-01 12 11183980 11183980 C T TAS2R31 5'UTR 0.41 TCGA-2F-A9KP-01 12 1137574 1137574 C T ERC1 Missense_Mutation p.R169W 0.34 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KP-01 12 130897317 130897317 C T RIMBP2 Missense_Mutation p.D890N 0.51 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KP-01 12 133245252 133245252 C T POLE Silent p.R665R 0.43 TCGA-2F-A9KP-01 12 133257224 133257224 T C POLE Missense_Mutation p.Y85C 0.33 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KP-01 12 29469786 29469786 T C FAR2 Missense_Mutation p.L323S 0.38 tolerated(0.45) benign(0.169) TCGA-2F-A9KP-01 12 29469826 29469826 G A FAR2 Silent p.R336R 0.39 TCGA-2F-A9KP-01 12 4461585 4461585 A G C12orf5 Missense_Mutation p.N181D 0.46 tolerated(0.37) benign(0.001) TCGA-2F-A9KP-01 12 46231478 46231478 G T ARID2 Nonsense_Mutation p.E440* 0.31 TCGA-2F-A9KP-01 12 53298806 53298806 G A KRT8 Missense_Mutation p.S15F 0.38 deleterious_low_confidence(0) benign(0.002) TCGA-2F-A9KP-01 12 56335035 56335035 G A DGKA Splice_Site p.X368_splice 0.22 TCGA-2F-A9KP-01 12 58007280 58007280 A G ARHGEF25 Missense_Mutation p.K195E 0.40 tolerated(0.22) benign(0.021) TCGA-2F-A9KP-01 12 58007281 58007281 A C ARHGEF25 Missense_Mutation p.K195T 0.40 tolerated(0.22) benign(0.002) TCGA-2F-A9KP-01 12 60173494 60173494 C T SLC16A7 3'UTR 0.19 TCGA-2F-A9KP-01 12 81768548 81768548 C G PPFIA2 Splice_Site p.X378_splice 0.21 TCGA-2F-A9KP-01 12 8211970 8211970 C T C3AR1 Missense_Mutation p.S271N 0.42 tolerated(0.33) benign(0.01) TCGA-2F-A9KP-01 13 113086762 113086762 G A SPACA7 Silent p.K150K 0.34 TCGA-2F-A9KP-01 13 41706708 41706708 C T KBTBD6 5'UTR 0.55 TCGA-2F-A9KP-01 14 101348375 101348375 G T RTL1 Nonsense_Mutation p.Y917* 0.24 TCGA-2F-A9KP-01 14 102901471 102901471 G A TECPR2 Missense_Mutation p.E773K 0.33 deleterious(0.01) benign(0.341) TCGA-2F-A9KP-01 14 19571352 19571352 A T POTEG Missense_Mutation p.Q377H 0.25 tolerated(0.09) possibly_damaging(0.862) TCGA-2F-A9KP-01 14 23745221 23745221 C T HOMEZ Missense_Mutation p.D406N 0.20 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KP-01 14 47311142 47311142 G C MDGA2 Missense_Mutation p.R1024G 0.21 tolerated_low_confidence(0.07) benign(0.099) TCGA-2F-A9KP-01 14 53529869 53529869 G A DDHD1 Missense_Mutation p.R520W 0.35 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KP-01 14 55648012 55648012 C T DLGAP5 Missense_Mutation p.D167N 0.38 tolerated(0.77) benign(0.002) TCGA-2F-A9KP-01 14 60574699 60574699 G A PCNXL4 Intron 0.20 TCGA-2F-A9KP-01 14 69583208 69583208 G A DCAF5 Silent p.P180P 0.49 TCGA-2F-A9KP-01 14 90744713 90744713 C T NRDE2 Silent p.P1154P 0.17 TCGA-2F-A9KP-01 15 28326943 28326943 G A OCA2 Silent p.S26S 0.38 TCGA-2F-A9KP-01 15 28600014 28600014 C T RP11-483E23.2 Splice_Site 0.19 TCGA-2F-A9KP-01 15 58302944 58302944 G A ALDH1A2 Silent p.F132F 0.51 TCGA-2F-A9KP-01 15 59466098 59466098 C G MYO1E Missense_Mutation p.L727F 0.42 tolerated(0.66) probably_damaging(1) TCGA-2F-A9KP-01 16 57597142 57597142 C G GPR114 Missense_Mutation p.L94V 0.37 tolerated(0.19) benign(0.004) TCGA-2F-A9KP-01 16 69973882 69973882 G T WWP2 3'UTR 0.31 TCGA-2F-A9KP-01 16 75681786 75681786 G T TERF2IP Silent p.A2A 0.27 TCGA-2F-A9KP-01 16 7568220 7568220 G A RBFOX1 Silent p.P53P 0.20 TCGA-2F-A9KP-01 16 86613253 86613253 C G FOXL1 Missense_Mutation p.F308L 0.48 tolerated(0.12) possibly_damaging(0.827) TCGA-2F-A9KP-01 16 87457449 87457449 T C ZCCHC14 Silent p.K132K 0.26 TCGA-2F-A9KP-01 17 33768152 33768152 G C SLFN13 Nonsense_Mutation p.S719* 0.77 TCGA-2F-A9KP-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 1.00 tolerated(0.19) benign(0.022) TCGA-2F-A9KP-01 17 38183175 38183175 C G MED24 Missense_Mutation p.R548P 0.73 deleterious(0.05) possibly_damaging(0.601) TCGA-2F-A9KP-01 17 45387554 45387554 C T ITGB3 Missense_Mutation p.T784M 0.81 deleterious(0) probably_damaging(0.957) TCGA-2F-A9KP-01 17 65628271 65628271 G A PITPNC1 Missense_Mutation p.E127K 0.88 tolerated(0.27) benign(0.373) TCGA-2F-A9KP-01 17 6703405 6703405 G A TEKT1 Missense_Mutation p.R400W 0.15 tolerated(0.05) benign(0.004) TCGA-2F-A9KP-01 17 72840411 72840411 C G GRIN2C Intron 0.75 TCGA-2F-A9KP-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.05 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.77 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 18 2601415 2601415 G A NDC80 Silent p.L465L 0.36 TCGA-2F-A9KP-01 18 28602409 28602409 G A DSC3 Missense_Mutation p.R279C 0.05 deleterious(0) probably_damaging(0.956) TCGA-2F-A9KP-01 19 12821493 12821493 G A TNPO2 Silent p.F404F 0.53 TCGA-2F-A9KP-01 19 12842168 12842168 G A C19orf43 Missense_Mutation p.T138M 0.43 tolerated(0.06) benign(0.062) TCGA-2F-A9KP-01 19 19375470 19375470 C G TM6SF2 3'UTR 0.70 TCGA-2F-A9KP-01 19 22364165 22364165 A G ZNF676 Silent p.Y118Y 0.37 TCGA-2F-A9KP-01 19 40909764 40909764 C T PRX Silent p.L11L 0.36 TCGA-2F-A9KP-01 19 41354268 41354268 G A CYP2A6 Silent p.P170P 0.36 TCGA-2F-A9KP-01 19 4362347 4362347 G A SH3GL1 Missense_Mutation p.R297W 0.38 tolerated(0.18) possibly_damaging(0.852) TCGA-2F-A9KP-01 19 49469902 49469927 TGACCACCTGACCAACCTCCACAGGC - FTL Frame_Shift_Del p.D147Gfs*25 0.27 TCGA-2F-A9KP-01 19 49644691 49644691 G T PPFIA3 Missense_Mutation p.D795Y 0.20 deleterious(0) benign(0.068) TCGA-2F-A9KP-01 19 49644694 49644694 G A PPFIA3 Missense_Mutation p.E796K 0.22 tolerated(0.07) benign(0.021) TCGA-2F-A9KP-01 19 50173542 50173542 G C BCL2L12 Missense_Mutation p.E251Q 0.36 tolerated(0.05) probably_damaging(0.916) TCGA-2F-A9KP-01 19 7677174 7677174 G C CAMSAP3 Missense_Mutation p.E626Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KP-01 19 7677214 7677214 G A CAMSAP3 Missense_Mutation p.R639K 0.47 tolerated(0.69) possibly_damaging(0.55) TCGA-2F-A9KP-01 1 101704753 101704753 G A S1PR1 Nonsense_Mutation p.W71* 0.42 TCGA-2F-A9KP-01 1 154302887 154302887 C T ATP8B2 Missense_Mutation p.A49V 0.35 tolerated(1) benign(0.001) TCGA-2F-A9KP-01 1 160000591 160000591 G A PIGM Silent p.L313L 0.33 TCGA-2F-A9KP-01 1 21036289 21036289 C T KIF17 Silent p.V171V 0.28 TCGA-2F-A9KP-01 1 237863742 237863742 G T RYR2 Missense_Mutation p.Q3114H 0.67 possibly_damaging(0.702) TCGA-2F-A9KP-01 1 25229116 25229116 C T RUNX3 Missense_Mutation p.D263N 0.21 deleterious(0.01) benign(0.118) TCGA-2F-A9KP-01 1 27100390 27100390 G A ARID1A Splice_Site p.X1367_splice 0.66 TCGA-2F-A9KP-01 1 5924052 5924052 G A NPHP4 Silent p.V1346V 0.58 TCGA-2F-A9KP-01 1 6189110 6189110 C T CHD5 Missense_Mutation p.R1136H 0.21 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KP-01 1 84961607 84961607 C G RPF1 Missense_Mutation p.L248V 0.35 deleterious(0.01) possibly_damaging(0.893) TCGA-2F-A9KP-01 20 16492139 16492140 - TCTC KIF16B Frame_Shift_Ins p.D160Efs*10 0.39 TCGA-2F-A9KP-01 20 21492997 21492997 C T NKX2-2 Missense_Mutation p.R129Q 0.50 deleterious(0.01) possibly_damaging(0.704) TCGA-2F-A9KP-01 20 34302110 34302110 C G RBM39 Missense_Mutation p.E365Q 0.09 tolerated(0.12) benign(0.074) TCGA-2F-A9KP-01 20 34302299 34302299 C T RBM39 Missense_Mutation p.E302K 0.05 deleterious(0.02) benign(0.247) TCGA-2F-A9KP-01 20 37356654 37356654 A G SLC32A1 Missense_Mutation p.Y317C 0.22 deleterious(0) probably_damaging(0.978) TCGA-2F-A9KP-01 20 377242 377242 C G TRIB3 Missense_Mutation p.L329V 0.32 tolerated(0.52) benign(0.03) TCGA-2F-A9KP-01 20 60791271 60791271 G A HRH3 Silent p.L377L 0.62 TCGA-2F-A9KP-01 21 10951349 10951349 A G TPTE Silent p.Y121Y 0.12 TCGA-2F-A9KP-01 21 35514865 35514865 G A MRPS6 Missense_Mutation p.E115K 0.47 tolerated(0.11) benign(0.37) TCGA-2F-A9KP-01 21 37665710 37665710 C T DOPEY2 Silent p.F2246F 0.39 TCGA-2F-A9KP-01 22 19754183 19754183 C T TBX1 Silent p.L427L 0.60 TCGA-2F-A9KP-01 22 19956281 19956281 C T COMT 3'UTR 0.32 TCGA-2F-A9KP-01 22 30864529 30864529 C T SEC14L3 Missense_Mutation p.R130H 0.40 tolerated(0.05) possibly_damaging(0.861) TCGA-2F-A9KP-01 22 41742178 41742178 A G ZC3H7B Missense_Mutation p.K544R 0.28 deleterious(0.01) benign(0.155) TCGA-2F-A9KP-01 2 113500207 113500207 C G NT5DC4 3'UTR 0.50 TCGA-2F-A9KP-01 2 120078732 120078732 T C C2orf76 Missense_Mutation p.Y61C 0.34 deleterious(0) probably_damaging(0.991) TCGA-2F-A9KP-01 2 131799409 131799409 C T ARHGEF4 Silent p.A453A 0.27 TCGA-2F-A9KP-01 2 132240410 132240410 G A TUBA3D Missense_Mutation p.E448K 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-2F-A9KP-01 2 160813127 160813127 C G PLA2R1 Silent p.L972L 0.45 TCGA-2F-A9KP-01 2 17952470 17952470 C T GEN1 Missense_Mutation p.R240W 0.21 deleterious(0) possibly_damaging(0.586) TCGA-2F-A9KP-01 2 189926325 189926325 C G COL5A2 Missense_Mutation p.R665T 0.20 probably_damaging(0.994) TCGA-2F-A9KP-01 2 196825651 196825651 C T DNAH7 Missense_Mutation p.E742K 0.34 deleterious(0) probably_damaging(0.927) TCGA-2F-A9KP-01 2 202700371 202700371 G A CDK15 Missense_Mutation p.A246T 0.45 deleterious(0) probably_damaging(0.978) TCGA-2F-A9KP-01 2 227872241 227872241 C G COL4A4 Missense_Mutation p.D1625H 0.61 unknown(0) TCGA-2F-A9KP-01 2 233399030 233399030 G A CHRND Missense_Mutation p.R450K 0.61 tolerated(0.39) benign(0.019) TCGA-2F-A9KP-01 2 27121541 27121541 G A DPYSL5 Silent p.V58V 0.30 TCGA-2F-A9KP-01 2 33413727 33413727 G A LTBP1 Missense_Mutation p.D504N 0.35 deleterious(0) possibly_damaging(0.821) TCGA-2F-A9KP-01 2 45636 45636 G C FAM110C Missense_Mutation p.S250R 0.62 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 2 77748890 77748890 C T LRRTM4 Intron 0.40 TCGA-2F-A9KP-01 2 86393760 86393760 G C IMMT Silent p.A221A 0.46 TCGA-2F-A9KP-01 2 88876210 88876210 C A EIF2AK3 Missense_Mutation p.R633L 0.30 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KP-01 3 101062549 101062549 T - SENP7 Frame_Shift_Del p.K696Sfs*2 0.12 TCGA-2F-A9KP-01 3 108158680 108158680 C T MYH15 Silent p.E1013E 0.18 TCGA-2F-A9KP-01 3 113697058 113697058 C T KIAA1407 Missense_Mutation p.E861K 0.28 tolerated(1) benign(0.013) TCGA-2F-A9KP-01 3 115560734 115560734 C T LSAMP Missense_Mutation p.A293T 0.17 tolerated(0.75) benign(0.035) TCGA-2F-A9KP-01 3 125731504 125731504 C G SLC41A3 Missense_Mutation p.Q353H 0.54 tolerated(0.12) possibly_damaging(0.796) TCGA-2F-A9KP-01 3 190347317 190347317 C T IL1RAP Intron 0.31 TCGA-2F-A9KP-01 3 196386910 196386910 G A NRROS Silent p.P132P 0.25 TCGA-2F-A9KP-01 3 24188225 24188225 C T THRB Missense_Mutation p.R158Q 0.20 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 3 53218948 53218948 C G PRKCD Missense_Mutation p.I282M 0.59 deleterious(0) probably_damaging(0.974) TCGA-2F-A9KP-01 3 6903530 6903530 G T GRM7 Missense_Mutation p.G152V 0.40 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 3 9036073 9036073 C T SRGAP3 Missense_Mutation p.G788S 0.54 deleterious(0.02) possibly_damaging(0.867) TCGA-2F-A9KP-01 4 104074323 104074323 C G CENPE Missense_Mutation p.E1040Q 0.38 probably_damaging(0.931) TCGA-2F-A9KP-01 4 119810229 119810229 G T SYNPO2 Missense_Mutation p.G13V 0.14 deleterious(0) probably_damaging(1) TCGA-2F-A9KP-01 4 2698176 2698177 - A FAM193A Frame_Shift_Ins p.M833Nfs*12 0.30 TCGA-2F-A9KP-01 4 2955357 2955357 G C NOP14 Missense_Mutation p.Q210E 0.36 tolerated(0.44) benign(0.032) TCGA-2F-A9KP-01 4 42895665 42895665 C T GRXCR1 Nonsense_Mutation p.Q128* 0.19 TCGA-2F-A9KP-01 4 47574247 47574247 G A ATP10D Silent p.Q1080Q 0.37 TCGA-2F-A9KP-01 4 69403585 69403585 G C UGT2B17 Missense_Mutation p.H451D 0.37 deleterious(0) probably_damaging(0.982) TCGA-2F-A9KP-01 4 905524 905524 T C GAK Missense_Mutation p.I107V 0.13 deleterious(0.05) benign(0.019) TCGA-2F-A9KP-01 5 140563741 140563741 G A PCDHB16 Missense_Mutation p.R536H 0.35 tolerated_low_confidence(0.06) benign(0.035) TCGA-2F-A9KP-01 5 171766725 171766725 C T SH3PXD2B Missense_Mutation p.E462K 0.29 tolerated(0.07) benign(0.254) TCGA-2F-A9KP-01 5 35697824 35697824 A C SPEF2 Silent p.S690S 0.49 TCGA-2F-A9KP-01 6 101073134 101073134 C G ASCC3 Missense_Mutation p.L1573F 0.24 tolerated(0.05) benign(0.302) TCGA-2F-A9KP-01 6 26033565 26033565 G T HIST1H2AB Missense_Mutation p.R78S 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2F-A9KP-01 6 33541642 33541642 G C BAK1 Missense_Mutation p.L192V 0.39 tolerated(0.13) benign(0.002) TCGA-2F-A9KP-01 6 34824635 34824635 C T UHRF1BP1 Nonsense_Mutation p.Q454* 0.42 TCGA-2F-A9KP-01 6 44397565 44397565 A G CDC5L Missense_Mutation p.Y670C 0.48 deleterious(0) probably_damaging(0.923) TCGA-2F-A9KP-01 6 46658345 46658345 G A TDRD6 Missense_Mutation p.R827Q 0.12 tolerated(0.3) probably_damaging(0.98) TCGA-2F-A9KP-01 6 72006031 72006031 G A OGFRL1 Missense_Mutation p.E138K 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-2F-A9KP-01 6 73787601 73787601 G T KCNQ5 Missense_Mutation p.W303C 0.34 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KP-01 6 73951320 73951320 C T KHDC1 Missense_Mutation p.V216I 0.35 tolerated_low_confidence(0.16) possibly_damaging(0.636) TCGA-2F-A9KP-01 6 83848138 83848138 C T DOPEY1 Silent p.L1459L 0.41 TCGA-2F-A9KP-01 7 100490079 100490079 G A ACHE Missense_Mutation p.P477S 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-2F-A9KP-01 7 138745719 138745719 G C ZC3HAV1 Intron 0.35 TCGA-2F-A9KP-01 7 22233087 22233087 G C RAPGEF5 Intron 0.44 TCGA-2F-A9KP-01 7 38516466 38516466 G A AMPH Missense_Mutation p.S167F 0.54 deleterious(0) probably_damaging(0.962) TCGA-2F-A9KP-01 7 4856041 4856041 C T RADIL Missense_Mutation p.R595H 0.50 tolerated(0.58) benign(0.004) TCGA-2F-A9KP-01 7 53103605 53103605 C T POM121L12 Missense_Mutation p.R81W 0.36 deleterious(0.02) probably_damaging(0.942) TCGA-2F-A9KP-01 7 5754800 5754800 G A RNF216 Missense_Mutation p.R573C 0.08 tolerated(0.1) probably_damaging(0.984) TCGA-2F-A9KP-01 7 82430882 82430882 C T PCLO Missense_Mutation p.E4987K 0.32 unknown(0) TCGA-2F-A9KP-01 7 82585107 82585107 T A PCLO Missense_Mutation p.H1721L 0.07 unknown(0) TCGA-2F-A9KP-01 7 97784073 97784073 C T LMTK2 Missense_Mutation p.L152F 0.42 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KP-01 8 108970470 108970470 C A RSPO2 Nonsense_Mutation p.E152* 0.42 TCGA-2F-A9KP-01 8 110576827 110576827 C T EBAG9 3'UTR 0.31 TCGA-2F-A9KP-01 8 128751084 128751084 G T MYC Silent p.S207S 0.47 TCGA-2F-A9KP-01 8 12879517 12879517 G A KIAA1456 Nonsense_Mutation p.W443* 0.56 TCGA-2F-A9KP-01 8 72184061 72184061 C G EYA1 Missense_Mutation p.D300H 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-2F-A9KP-01 8 77776536 77776536 T A ZFHX4 Missense_Mutation p.I3529N 0.33 probably_damaging(0.989) TCGA-2F-A9KP-01 8 88886082 88886082 C T DCAF4L2 Missense_Mutation p.A40T 0.29 tolerated(1) benign(0.001) TCGA-2F-A9KP-01 9 113141679 113141679 C T SVEP1 Silent p.L3452L 0.76 TCGA-2F-A9KP-01 9 114993695 114993695 T G PTBP3 Splice_Site p.X375_splice 0.68 TCGA-2F-A9KP-01 9 125760892 125760892 G A RABGAP1 Missense_Mutation p.M407I 0.77 tolerated(0.07) benign(0.015) TCGA-2F-A9KP-01 9 14746986 14746986 C G FREM1 Missense_Mutation p.E2025Q 0.31 tolerated(0.32) benign(0.041) TCGA-2F-A9KP-01 9 2729517 2729517 C T KCNV2 Silent p.L476L 0.22 TCGA-2F-A9KP-01 9 2729539 2729539 C A KCNV2 Missense_Mutation p.L484I 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-2F-A9KP-01 9 36170642 36170642 C T CCIN Silent p.G381G 0.20 TCGA-2F-A9KP-01 X 135594161 135594161 G A HTATSF1 Missense_Mutation p.D753N 0.72 deleterious_low_confidence(0.01) unknown(0) TCGA-2F-A9KP-01 X 27997889 27997889 T A DCAF8L1 Missense_Mutation p.L521F 0.87 deleterious(0.04) probably_damaging(0.977) TCGA-2F-A9KP-01 X 44913145 44913146 - AA KDM6A Frame_Shift_Ins p.L277Pfs*49 0.42 TCGA-2F-A9KP-01 X 65476069 65476069 T C HEPH Silent p.N985N 0.80 TCGA-2F-A9KP-01 X 69516995 69516995 A G KIF4A Missense_Mutation p.K128R 0.62 tolerated(0.18) benign(0.007) TCGA-2F-A9KP-01 X 70340864 70340864 G C MED12 Missense_Mutation p.Q199H 0.73 possibly_damaging(0.885) TCGA-2F-A9KQ-01 10 101715892 101715892 G A DNMBP Missense_Mutation p.L447F 0.45 tolerated_low_confidence(0.29) benign(0.001) TCGA-2F-A9KQ-01 10 1170267 1170267 A T WDR37 Missense_Mutation p.I405F 0.38 deleterious(0) possibly_damaging(0.84) TCGA-2F-A9KQ-01 10 11994229 11994229 T C UPF2 Missense_Mutation p.K957R 0.51 tolerated(0.25) benign(0.268) TCGA-2F-A9KQ-01 10 135125399 135125399 G A ZNF511 Intron 0.51 TCGA-2F-A9KQ-01 10 17275611 17275611 G A VIM Missense_Mutation p.R217H 0.39 deleterious(0.01) possibly_damaging(0.865) TCGA-2F-A9KQ-01 11 123988900 123988900 G A VWA5A Missense_Mutation p.R84H 0.10 tolerated(0.91) benign(0.031) TCGA-2F-A9KQ-01 11 47595284 47595284 G A KBTBD4 Missense_Mutation p.S268L 0.40 tolerated(0.42) benign(0.034) TCGA-2F-A9KQ-01 11 86270753 86270753 C T ME3 Missense_Mutation p.R99Q 0.40 tolerated(0.53) benign(0.004) TCGA-2F-A9KQ-01 11 8737278 8737278 G A ST5 Missense_Mutation p.H573Y 0.43 tolerated(1) benign(0.036) TCGA-2F-A9KQ-01 12 122618514 122618514 A C MLXIP Missense_Mutation p.K571T 0.16 tolerated(0.17) possibly_damaging(0.881) TCGA-2F-A9KQ-01 12 125509829 125509829 C G BRI3BP Missense_Mutation p.F203L 0.11 tolerated_low_confidence(0.38) benign(0.002) TCGA-2F-A9KQ-01 12 6428003 6428003 C T PLEKHG6 Silent p.L456L 0.43 TCGA-2F-A9KQ-01 14 105954727 105954727 T C CRIP1 Splice_Site p.X65_splice 0.26 TCGA-2F-A9KQ-01 14 21498771 21498771 C T TPPP2 Missense_Mutation p.R11W 0.61 tolerated(0.05) benign(0.077) TCGA-2F-A9KQ-01 14 33201664 33201664 A G AKAP6 Missense_Mutation p.Y1002C 0.43 tolerated(0.09) possibly_damaging(0.863) TCGA-2F-A9KQ-01 14 52899097 52899097 A G TXNDC16 Silent p.N801N 0.40 TCGA-2F-A9KQ-01 14 62193502 62193502 G T HIF1A Missense_Mutation p.G203V 0.39 deleterious(0.02) probably_damaging(1) TCGA-2F-A9KQ-01 14 73543071 73543071 C A RBM25 Missense_Mutation p.P51T 0.44 probably_damaging(0.981) TCGA-2F-A9KQ-01 14 99641424 99641424 C T BCL11B Silent p.A583A 0.39 TCGA-2F-A9KQ-01 15 34112956 34112956 G C RYR3 Splice_Site p.X3587_splice 0.40 TCGA-2F-A9KQ-01 15 70970513 70970513 C G UACA Missense_Mutation p.E308D 0.32 tolerated(0.51) benign(0.012) TCGA-2F-A9KQ-01 16 19718112 19718112 T A KNOP1 3'UTR 0.49 TCGA-2F-A9KQ-01 16 21073926 21073926 C T DNAH3 Silent p.L1199L 0.46 TCGA-2F-A9KQ-01 16 29916255 29916255 C T ASPHD1 Silent p.D344D 0.50 TCGA-2F-A9KQ-01 17 16667394 16667394 G A CCDC144A Missense_Mutation p.V1335I 0.24 tolerated(0.06) benign(0.043) TCGA-2F-A9KQ-01 17 17076064 17076064 G T MPRIP Missense_Mutation p.E788D 0.46 tolerated(0.16) benign(0.343) TCGA-2F-A9KQ-01 17 17699029 17699029 G T RAI1 Nonsense_Mutation p.E923* 0.51 TCGA-2F-A9KQ-01 17 43322370 43322370 C T FMNL1 Missense_Mutation p.R875C 0.36 deleterious(0) probably_damaging(1) TCGA-2F-A9KQ-01 17 45735916 45735916 G A KPNB1 Missense_Mutation p.A176T 0.39 deleterious(0) possibly_damaging(0.676) TCGA-2F-A9KQ-01 17 61910503 61910503 C T SMARCD2 Missense_Mutation p.E490K 0.33 deleterious(0) probably_damaging(0.98) TCGA-2F-A9KQ-01 17 73569237 73569237 C G LLGL2 Missense_Mutation p.T868S 0.57 tolerated(0.14) probably_damaging(0.997) TCGA-2F-A9KQ-01 17 78704387 78704387 A G RPTOR Missense_Mutation p.I179V 0.44 tolerated(0.3) benign(0) TCGA-2F-A9KQ-01 19 17892613 17892613 C T FCHO1 Missense_Mutation p.R641C 0.60 deleterious(0) possibly_damaging(0.857) TCGA-2F-A9KQ-01 19 34710342 34710342 G A LSM14A Silent p.R276R 0.42 TCGA-2F-A9KQ-01 19 44739730 44739730 G A ZNF227 Missense_Mutation p.E383K 0.43 tolerated(0.27) possibly_damaging(0.782) TCGA-2F-A9KQ-01 19 51961614 51961614 G A SIGLEC8 Silent p.L10L 0.41 TCGA-2F-A9KQ-01 19 56382202 56382202 C A NLRP4 Missense_Mutation p.F788L 0.19 tolerated(0.63) benign(0.004) TCGA-2F-A9KQ-01 1 1231227 1231227 G A ACAP3 Missense_Mutation p.R532C 0.50 deleterious(0) possibly_damaging(0.453) TCGA-2F-A9KQ-01 1 1245097 1245097 G A PUSL1 Silent p.Q170Q 0.31 TCGA-2F-A9KQ-01 1 154936262 154936262 G C SHC1 3'UTR 0.60 TCGA-2F-A9KQ-01 1 154941021 154941021 G C SHC1 Missense_Mutation p.L234V 0.44 tolerated(0.28) probably_damaging(0.934) TCGA-2F-A9KQ-01 1 158153732 158153732 G C CD1D Missense_Mutation p.S298T 0.41 tolerated(0.35) benign(0.021) TCGA-2F-A9KQ-01 1 226252098 226252098 G T H3F3A Missense_Mutation p.A16S 0.49 deleterious_low_confidence(0) benign(0.078) TCGA-2F-A9KQ-01 1 24078328 24078328 C T TCEB3 Silent p.L437L 0.40 TCGA-2F-A9KQ-01 20 14066286 14066286 A G MACROD2 Silent p.T61T 0.43 TCGA-2F-A9KQ-01 20 29891074 29891074 C T DEFB116 Missense_Mutation p.D84N 0.44 tolerated(0.56) benign(0.001) TCGA-2F-A9KQ-01 20 57429244 57429244 G A GNAS Silent p.P308P 0.20 TCGA-2F-A9KQ-01 21 11026757 11026757 A G BAGE2 RNA 0.28 TCGA-2F-A9KQ-01 2 114340612 114340612 G T MIR1302-3 RNA 0.13 TCGA-2F-A9KQ-01 2 179569382 179569382 T A TTN Missense_Mutation p.E9939D 0.83 TCGA-2F-A9KQ-01 2 179579277 179579277 G A TTN Missense_Mutation p.L8742F 0.86 TCGA-2F-A9KQ-01 2 212295752 212295752 G C ERBB4 Missense_Mutation p.P854R 0.71 deleterious(0) probably_damaging(0.987) TCGA-2F-A9KQ-01 3 12434122 12434122 C T PPARG Missense_Mutation p.R164W 0.35 deleterious(0) probably_damaging(1) TCGA-2F-A9KQ-01 3 132418268 132418268 C T NPHP3 Silent p.L638L 0.50 TCGA-2F-A9KQ-01 3 167510380 167510380 C T SERPINI1 Silent p.L162L 0.54 TCGA-2F-A9KQ-01 3 31674460 31674460 A G STT3B Missense_Mutation p.T741A 0.34 tolerated(0.15) benign(0.39) TCGA-2F-A9KQ-01 4 120057704 120057704 G C MYOZ2 Missense_Mutation p.M8I 0.52 tolerated(0.23) benign(0.033) TCGA-2F-A9KQ-01 4 126238715 126238715 G A FAT4 Silent p.T383T 0.33 TCGA-2F-A9KQ-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.45 deleterious(0) possibly_damaging(0.882) TCGA-2F-A9KQ-01 4 56284102 56284102 G C TMEM165 Missense_Mutation p.E248Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KQ-01 4 72205110 72205110 C T SLC4A4 Nonsense_Mutation p.R93* 0.36 TCGA-2F-A9KQ-01 4 98480206 98480206 A C STPG2 3'UTR 0.42 TCGA-2F-A9KQ-01 5 110432806 110432806 A G WDR36 Missense_Mutation p.M130V 0.34 tolerated(0.07) benign(0.002) TCGA-2F-A9KQ-01 5 132228794 132228794 C T AFF4 Missense_Mutation p.R775Q 0.41 tolerated(0.53) possibly_damaging(0.68) TCGA-2F-A9KQ-01 5 140215835 140215835 C T PCDHA7 Missense_Mutation p.R623C 0.45 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-2F-A9KQ-01 5 140764244 140764244 C T PCDHGA7 Missense_Mutation p.A593V 0.32 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-2F-A9KQ-01 5 2755256 2755256 C A C5orf38 3'UTR 0.47 TCGA-2F-A9KQ-01 5 36035978 36035978 G C UGT3A2 Missense_Mutation p.T465R 0.32 tolerated(0.05) probably_damaging(0.993) TCGA-2F-A9KQ-01 6 117700313 117700313 G C ROS1 Missense_Mutation p.L836V 0.76 deleterious(0.01) benign(0.111) TCGA-2F-A9KQ-01 6 125269212 125269212 G A RP11-510H23.1 RNA 0.95 TCGA-2F-A9KQ-01 6 152560831 152560831 T C SYNE1 Missense_Mutation p.Q6635R 0.50 benign(0.425) TCGA-2F-A9KQ-01 6 160679778 160679778 G A SLC22A2 Silent p.T4T 0.54 TCGA-2F-A9KQ-01 6 27419798 27419798 G C ZNF184 Missense_Mutation p.L514V 0.41 tolerated(0.54) possibly_damaging(0.562) TCGA-2F-A9KQ-01 6 27419812 27419812 T G ZNF184 Missense_Mutation p.K509T 0.47 deleterious(0) probably_damaging(1) TCGA-2F-A9KQ-01 6 28541249 28541249 G T SCAND3 Missense_Mutation p.P806Q 0.20 tolerated(0.16) probably_damaging(0.996) TCGA-2F-A9KQ-01 6 36651924 36651924 A - CDKN1A Frame_Shift_Del p.K16Rfs*15 0.25 TCGA-2F-A9KQ-01 6 36651944 36651945 - G CDKN1A Frame_Shift_Ins p.V25Sfs*11 0.40 TCGA-2F-A9KQ-01 6 43401045 43401045 C T ABCC10 Missense_Mutation p.R443C 0.48 deleterious(0.05) probably_damaging(1) TCGA-2F-A9KQ-01 7 127670541 127670541 C T LRRC4 Silent p.S51S 0.49 TCGA-2F-A9KQ-01 7 129962605 129962605 A T CPA4 3'UTR 0.38 TCGA-2F-A9KQ-01 7 4830793 4830793 C T AP5Z1 Missense_Mutation p.A734V 0.48 deleterious(0.05) possibly_damaging(0.637) TCGA-2F-A9KQ-01 7 91855911 91855911 G A KRIT1 Missense_Mutation p.L359F 0.42 deleterious(0) probably_damaging(1) TCGA-2F-A9KQ-01 8 94770789 94770789 A G TMEM67 Missense_Mutation p.I131V 0.44 tolerated(0.26) benign(0) TCGA-2F-A9KQ-01 9 131394415 131394415 C T SPTAN1 Nonsense_Mutation p.Q2258* 0.93 TCGA-2F-A9KQ-01 9 135776099 135776099 T A TSC1 Intron 0.86 TCGA-2F-A9KQ-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.87 deleterious(0) probably_damaging(1) TCGA-2F-A9KQ-01 X 65253602 65253602 G A VSIG4 Silent p.T42T 0.92 TCGA-2F-A9KR-01 10 24669887 24669887 G A KIAA1217 Silent p.L148L 0.86 TCGA-2F-A9KR-01 10 55583058 55583058 C T PCDH15 Silent p.R1478R 0.06 TCGA-2F-A9KR-01 10 5784284 5784284 C G FAM208B Missense_Mutation p.S851C 0.68 deleterious(0) possibly_damaging(0.518) TCGA-2F-A9KR-01 10 68857439 68857439 C A LRRTM3 Missense_Mutation p.S544Y 0.27 deleterious_low_confidence(0.03) benign(0.305) TCGA-2F-A9KR-01 10 70516175 70516175 C T CCAR1 Nonsense_Mutation p.R591* 0.68 TCGA-2F-A9KR-01 10 930416 930416 G A LARP4B Nonsense_Mutation p.Q38* 0.69 TCGA-2F-A9KR-01 11 102564716 102564716 G A MMP27 Missense_Mutation p.R372C 0.69 deleterious(0.02) possibly_damaging(0.517) TCGA-2F-A9KR-01 11 105924178 105924178 C G KBTBD3 Missense_Mutation p.R413T 0.79 tolerated(0.5) benign(0.003) TCGA-2F-A9KR-01 11 118454044 118454044 G A ARCN1 Missense_Mutation p.E140K 0.20 deleterious(0) probably_damaging(0.99) TCGA-2F-A9KR-01 11 130284545 130284545 C T ADAMTS8 Missense_Mutation p.E483K 0.73 tolerated(0.26) benign(0.013) TCGA-2F-A9KR-01 11 132306605 132306605 C A OPCML Nonsense_Mutation p.E245* 0.20 TCGA-2F-A9KR-01 11 17427079 17427079 G A ABCC8 Silent p.L1121L 0.24 TCGA-2F-A9KR-01 11 20129269 20129269 G A NAV2 Missense_Mutation p.D2360N 0.79 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KR-01 11 21250877 21250877 G A NELL1 Splice_Site p.X476_splice 0.61 TCGA-2F-A9KR-01 11 3685343 3685343 C T ART1 Missense_Mutation p.S303F 0.75 deleterious(0.03) benign(0.001) TCGA-2F-A9KR-01 11 3845614 3845614 C G PGAP2 Intron 0.17 TCGA-2F-A9KR-01 11 407524 407524 C T SIGIRR Missense_Mutation p.E176K 0.73 tolerated(0.14) benign(0.329) TCGA-2F-A9KR-01 11 47188426 47188426 C T ARFGAP2 Missense_Mutation p.R406Q 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-2F-A9KR-01 11 49974521 49974521 A T OR4C13 Missense_Mutation p.I183F 0.53 deleterious_low_confidence(0) benign(0.148) TCGA-2F-A9KR-01 11 55761367 55761367 C T OR5F1 Silent p.L245L 0.21 TCGA-2F-A9KR-01 11 56185293 56185293 C G OR5R1 Missense_Mutation p.R139T 0.13 deleterious(0.03) benign(0.014) TCGA-2F-A9KR-01 11 57505444 57505444 C G TMX2 Missense_Mutation p.L104V 0.81 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KR-01 11 64577236 64577236 C G MEN1 Missense_Mutation p.E116Q 0.18 deleterious(0) possibly_damaging(0.85) TCGA-2F-A9KR-01 11 66475692 66475692 C G SPTBN2 Missense_Mutation p.E424Q 0.78 deleterious(0) probably_damaging(0.964) TCGA-2F-A9KR-01 11 94194116 94194116 G C MRE11A Missense_Mutation p.Q438E 0.75 tolerated(0.46) benign(0.012) TCGA-2F-A9KR-01 12 100453298 100453298 G A UHRF1BP1L Missense_Mutation p.S586F 0.17 tolerated(0.16) benign(0.019) TCGA-2F-A9KR-01 12 102025451 102025451 C A MYBPC1 Missense_Mutation p.A106D 0.33 tolerated(0.09) probably_damaging(0.912) TCGA-2F-A9KR-01 12 102025811 102025811 G A MYBPC1 Missense_Mutation p.E126K 0.43 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KR-01 12 111352062 111352062 C T MYL2 Missense_Mutation p.E68K 0.05 tolerated(0.21) benign(0.015) TCGA-2F-A9KR-01 12 111800958 111800958 C T FAM109A Missense_Mutation p.V105M 0.45 deleterious(0.01) probably_damaging(0.941) TCGA-2F-A9KR-01 12 120117787 120117787 T G PRKAB1 Missense_Mutation p.L239R 0.26 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 12 120575778 120575778 C G GCN1L1 Missense_Mutation p.R2107P 0.12 possibly_damaging(0.775) TCGA-2F-A9KR-01 12 120583068 120583068 C G GCN1L1 Missense_Mutation p.E1672Q 0.27 benign(0.091) TCGA-2F-A9KR-01 12 122991457 122991457 G C RSRC2 Missense_Mutation p.S350C 0.06 deleterious(0.02) unknown(0) TCGA-2F-A9KR-01 12 130919303 130919303 C T RIMBP2 Silent p.L726L 0.60 TCGA-2F-A9KR-01 12 30787031 30787031 G A IPO8 Missense_Mutation p.T962I 0.28 tolerated(0.05) benign(0.004) TCGA-2F-A9KR-01 12 33579312 33579312 A T SYT10 Silent p.T90T 0.37 TCGA-2F-A9KR-01 12 39760168 39760168 G A KIF21A Missense_Mutation p.S296F 0.41 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 12 49412535 49412535 C T PRKAG1 5'UTR 0.08 TCGA-2F-A9KR-01 12 50390927 50390927 G C RACGAP1 Missense_Mutation p.L314V 0.43 tolerated(0.38) probably_damaging(0.97) TCGA-2F-A9KR-01 12 53200771 53200771 G C KRT4 3'UTR 0.31 TCGA-2F-A9KR-01 12 60165124 60165124 C T SLC16A7 Silent p.L114L 0.38 TCGA-2F-A9KR-01 12 662365 662365 G C B4GALNT3 Missense_Mutation p.E426Q 0.46 tolerated(0.48) benign(0.071) TCGA-2F-A9KR-01 12 71960475 71960475 G C LGR5 Missense_Mutation p.E331D 0.38 deleterious(0.01) probably_damaging(0.979) TCGA-2F-A9KR-01 12 80647344 80647344 T C OTOGL Missense_Mutation p.C453R 0.38 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KR-01 12 81205408 81205408 C T LIN7A Missense_Mutation p.D180N 0.47 tolerated(0.16) benign(0.283) TCGA-2F-A9KR-01 12 85450090 85450090 G A LRRIQ1 Missense_Mutation p.D507N 0.42 tolerated(0.14) benign(0.025) TCGA-2F-A9KR-01 12 88900808 88900808 C G KITLG Missense_Mutation p.W237C 0.05 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 12 98849295 98849295 G C SLC9A7P1 RNA 0.27 TCGA-2F-A9KR-01 13 109831922 109831922 T C MYO16 Missense_Mutation p.S1764P 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.451) TCGA-2F-A9KR-01 13 113826315 113826315 C A PROZ Missense_Mutation p.L389I 0.52 deleterious(0.01) probably_damaging(1) TCGA-2F-A9KR-01 13 28222568 28222568 G A POLR1D Missense_Mutation p.E27K 0.10 tolerated(0.13) probably_damaging(0.997) TCGA-2F-A9KR-01 13 30002943 30002943 G C MTUS2 Intron 0.43 TCGA-2F-A9KR-01 13 37394063 37394063 C T RFXAP Missense_Mutation p.S190L 0.12 tolerated_low_confidence(0.19) benign(0.038) TCGA-2F-A9KR-01 13 39541063 39541063 C T STOML3 Missense_Mutation p.E259K 0.10 deleterious(0.03) benign(0.037) TCGA-2F-A9KR-01 13 45781618 45781618 G A GTF2F2 Missense_Mutation p.E122K 0.38 tolerated(0.15) possibly_damaging(0.845) TCGA-2F-A9KR-01 13 50587216 50587216 C T TRIM13 Silent p.F383F 0.40 TCGA-2F-A9KR-01 13 52585499 52585499 C T ATP7B 5'UTR 0.18 TCGA-2F-A9KR-01 13 96743170 96743170 C T HS6ST3 Silent p.F18F 0.55 TCGA-2F-A9KR-01 14 105413508 105413508 C T AHNAK2 Silent p.L2760L 0.65 TCGA-2F-A9KR-01 14 23861792 23861792 C G MYH6 Missense_Mutation p.Q1107H 0.05 deleterious(0.03) benign(0.062) TCGA-2F-A9KR-01 14 60921847 60921847 C T C14orf39 Missense_Mutation p.A459T 0.24 tolerated(0.66) possibly_damaging(0.908) TCGA-2F-A9KR-01 14 64701804 64701804 C G ESR2 Silent p.L430L 0.71 TCGA-2F-A9KR-01 15 33878261 33878261 G A RYR3 Missense_Mutation p.E578K 0.11 benign(0.009) TCGA-2F-A9KR-01 15 43022926 43022926 G A CDAN1 Nonsense_Mutation p.R682* 0.41 TCGA-2F-A9KR-01 15 45389873 45389873 C A DUOX2 Missense_Mutation p.R1211L 0.09 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KR-01 15 50782478 50782478 G A USP8 Missense_Mutation p.G664R 0.40 tolerated(0.07) probably_damaging(0.998) TCGA-2F-A9KR-01 15 51778495 51778495 C T DMXL2 Missense_Mutation p.V1753I 0.37 tolerated(0.3) benign(0.009) TCGA-2F-A9KR-01 15 53908141 53908141 A G WDR72 Silent p.D754D 0.22 TCGA-2F-A9KR-01 15 80429905 80429905 G A ZFAND6 Missense_Mutation p.D188N 0.47 deleterious(0) probably_damaging(0.969) TCGA-2F-A9KR-01 15 91527346 91527346 C T PRC1 Missense_Mutation p.E57K 0.09 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 16 18895433 18895433 G C SMG1 Missense_Mutation p.L360V 0.14 deleterious(0) possibly_damaging(0.519) TCGA-2F-A9KR-01 16 20803616 20803616 G C ACSM3 Missense_Mutation p.E505Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KR-01 16 30977693 30977693 G A SETD1A Missense_Mutation p.E831K 0.20 possibly_damaging(0.636) TCGA-2F-A9KR-01 16 3339990 3339990 G T ZNF263 Missense_Mutation p.C495F 0.46 deleterious(0) probably_damaging(0.932) TCGA-2F-A9KR-01 16 3350414 3350414 C T TIGD7 Silent p.E67E 0.41 TCGA-2F-A9KR-01 16 3350600 3350600 C T TIGD7 Silent p.G5G 0.37 TCGA-2F-A9KR-01 16 3452062 3452062 G C ZNF174 Missense_Mutation p.E20Q 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-2F-A9KR-01 16 424317 424317 G A TMEM8A Silent p.L553L 0.39 TCGA-2F-A9KR-01 16 48130825 48130825 G A ABCC12 Intron 0.10 TCGA-2F-A9KR-01 16 68846154 68846154 C T CDH1 Silent p.F375F 0.38 TCGA-2F-A9KR-01 16 72821668 72821668 G A ZFHX3 Missense_Mutation p.H3503Y 0.38 unknown(0) TCGA-2F-A9KR-01 16 88876892 88876892 C T APRT Missense_Mutation p.R87Q 0.29 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 16 89341244 89341244 T C ANKRD11 Missense_Mutation p.Y2564C 0.42 probably_damaging(0.999) TCGA-2F-A9KR-01 17 10214487 10214487 G A MYH13 Missense_Mutation p.A1530V 0.69 tolerated(0.1) benign(0.001) TCGA-2F-A9KR-01 17 16623927 16623927 G C CCDC144A Missense_Mutation p.E616Q 0.56 tolerated(0.13) possibly_damaging(0.727) TCGA-2F-A9KR-01 17 1746094 1746094 C G RPA1 Intron 0.27 TCGA-2F-A9KR-01 17 26861965 26861965 C A FOXN1 Nonsense_Mutation p.S459* 0.15 TCGA-2F-A9KR-01 17 27187544 27187544 C T ERAL1 Silent p.I429I 0.05 TCGA-2F-A9KR-01 17 32612839 32612839 C A CCL11 Silent p.S4S 0.38 TCGA-2F-A9KR-01 17 39633417 39633417 G C KRT35 Missense_Mutation p.S420C 0.15 deleterious(0.04) benign(0.003) TCGA-2F-A9KR-01 17 44115956 44115956 G C KANSL1 Nonsense_Mutation p.S830* 0.43 TCGA-2F-A9KR-01 17 47013600 47013600 C T SNF8 Silent p.L118L 0.30 TCGA-2F-A9KR-01 17 4805440 4805440 C T C17orf107 3'UTR 0.91 TCGA-2F-A9KR-01 17 48629534 48629534 G A SPATA20 Silent p.L650L 0.70 TCGA-2F-A9KR-01 17 4884616 4884616 C A CAMTA2 Nonsense_Mutation p.E225* 0.22 TCGA-2F-A9KR-01 17 54450174 54450174 C T ANKFN1 Missense_Mutation p.R260C 0.10 deleterious(0) probably_damaging(0.992) TCGA-2F-A9KR-01 17 59761031 59761031 C - BRIP1 Frame_Shift_Del p.E1126Kfs*24 0.25 TCGA-2F-A9KR-01 17 60799867 60799867 C T MARCH10 Silent p.Q732Q 0.25 TCGA-2F-A9KR-01 17 61833909 61833909 C A CCDC47 Missense_Mutation p.D253Y 0.64 deleterious(0.02) possibly_damaging(0.873) TCGA-2F-A9KR-01 17 64873422 64873422 G A CACNG5 5'UTR 0.12 TCGA-2F-A9KR-01 17 73570736 73570736 C A LLGL2 Silent p.L1014L 0.14 TCGA-2F-A9KR-01 17 80403798 80403798 C T C17orf62 Silent p.L80L 0.21 TCGA-2F-A9KR-01 18 28728463 28728463 G A DSC1 Missense_Mutation p.S257F 0.32 tolerated(0.46) benign(0.121) TCGA-2F-A9KR-01 18 46448263 46448263 C G SMAD7 Missense_Mutation p.E254Q 0.89 tolerated(0.18) benign(0.177) TCGA-2F-A9KR-01 18 50451698 50451698 A G DCC Missense_Mutation p.K315E 0.24 tolerated(0.86) benign(0.021) TCGA-2F-A9KR-01 18 60217634 60217634 G A ZCCHC2 Silent p.L418L 0.81 TCGA-2F-A9KR-01 19 10790489 10790489 C T ILF3 Intron 0.49 TCGA-2F-A9KR-01 19 14153553 14153553 G T IL27RA Silent p.G240G 0.19 TCGA-2F-A9KR-01 19 1817274 1817274 C T REXO1 Missense_Mutation p.E1049K 0.37 tolerated(0.1) benign(0.018) TCGA-2F-A9KR-01 19 20807646 20807646 C G ZNF626 Missense_Mutation p.C346S 0.04 deleterious(0) probably_damaging(0.989) TCGA-2F-A9KR-01 19 22940696 22940696 G A ZNF99 Missense_Mutation p.T672I 0.07 deleterious(0.01) probably_damaging(0.968) TCGA-2F-A9KR-01 19 36220927 36220927 C G KMT2B Silent p.L1659L 0.12 TCGA-2F-A9KR-01 19 38161016 38161016 C A ZNF781 Missense_Mutation p.A12S 0.10 deleterious_low_confidence(0) benign(0.364) TCGA-2F-A9KR-01 19 38655271 38655271 C T SIPA1L3 Silent p.I1311I 0.46 TCGA-2F-A9KR-01 19 39096055 39096055 C G MAP4K1 Missense_Mutation p.K480N 0.45 tolerated(0.2) benign(0.075) TCGA-2F-A9KR-01 19 40540726 40540726 A G ZNF780B Silent p.R680R 0.39 TCGA-2F-A9KR-01 19 40886804 40886804 G A HIPK4 Missense_Mutation p.S365L 0.13 deleterious(0.02) benign(0.205) TCGA-2F-A9KR-01 19 41179340 41179340 C T NUMBL Silent p.K315K 0.43 TCGA-2F-A9KR-01 19 42728562 42728562 G C ZNF526 Missense_Mutation p.E3Q 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.478) TCGA-2F-A9KR-01 19 42729156 42729156 G C ZNF526 Missense_Mutation p.E201Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-2F-A9KR-01 19 42847659 42847659 C G MEGF8 Nonsense_Mutation p.S515* 0.47 TCGA-2F-A9KR-01 19 45811689 45811689 C T CKM Missense_Mutation p.R252H 0.33 deleterious(0.02) possibly_damaging(0.897) TCGA-2F-A9KR-01 19 46319240 46319240 C G SYMPK Missense_Mutation p.E1186Q 0.35 deleterious_low_confidence(0.01) benign(0.097) TCGA-2F-A9KR-01 19 50393020 50393020 G A IL4I1 Silent p.P559P 0.12 TCGA-2F-A9KR-01 19 51022621 51022621 G T LRRC4B Missense_Mutation p.L117M 0.07 deleterious(0.03) probably_damaging(0.99) TCGA-2F-A9KR-01 19 52000608 52000608 G A SIGLEC12 Silent p.F499F 0.42 TCGA-2F-A9KR-01 19 54387461 54387461 C T PRKCG Silent p.F83F 0.41 TCGA-2F-A9KR-01 19 54726412 54726412 G C LILRB3 Silent p.L31L 0.41 TCGA-2F-A9KR-01 19 54746164 54746164 G C LILRA6 Silent p.L31L 0.17 TCGA-2F-A9KR-01 19 56952934 56952934 C T ZNF667 Missense_Mutation p.G477E 0.43 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 19 5711811 5711811 C G LONP1 Missense_Mutation p.E281Q 0.14 tolerated(0.18) benign(0.13) TCGA-2F-A9KR-01 19 57175912 57175912 C T ZNF835 Missense_Mutation p.E219K 0.41 deleterious(0) possibly_damaging(0.792) TCGA-2F-A9KR-01 19 57646911 57646911 G A ZIM3 Missense_Mutation p.S265F 0.34 deleterious(0.02) possibly_damaging(0.462) TCGA-2F-A9KR-01 19 9407522 9407522 G C ZNF699 Silent p.L186L 0.39 TCGA-2F-A9KR-01 1 109191264 109191264 G C HENMT1 Nonsense_Mutation p.S369* 0.12 TCGA-2F-A9KR-01 1 116280869 116280869 A C CASQ2 Missense_Mutation p.F170V 0.04 deleterious(0) possibly_damaging(0.802) TCGA-2F-A9KR-01 1 119427660 119427660 G A TBX15 Nonsense_Mutation p.Q396* 0.59 TCGA-2F-A9KR-01 1 120056707 120056707 C T HSD3B1 Silent p.P187P 0.04 TCGA-2F-A9KR-01 1 12786000 12786000 C T AADACL3 3'Flank 0.44 TCGA-2F-A9KR-01 1 1374465 1374465 G A VWA1 Silent p.A212A 0.29 TCGA-2F-A9KR-01 1 150483596 150483596 C G ECM1 Silent p.L237L 0.45 TCGA-2F-A9KR-01 1 153930899 153930899 C T CRTC2 Silent p.K25K 0.57 TCGA-2F-A9KR-01 1 155001749 155001749 G A DCST2 Silent p.D434D 0.08 TCGA-2F-A9KR-01 1 155271182 155271182 G A PKLR Missense_Mutation p.S2L 0.41 deleterious_low_confidence(0) benign(0.078) TCGA-2F-A9KR-01 1 155734860 155734860 G A GON4L Silent p.L1468L 0.12 TCGA-2F-A9KR-01 1 158627336 158627336 T G SPTA1 Missense_Mutation p.E912D 0.04 tolerated(0.11) benign(0.186) TCGA-2F-A9KR-01 1 159683744 159683744 G C CRP Silent p.L82L 0.45 TCGA-2F-A9KR-01 1 159684233 159684233 G A CRP Missense_Mutation p.H15Y 0.29 deleterious(0.04) benign(0.216) TCGA-2F-A9KR-01 1 161277101 161277101 C T MPZ Missense_Mutation p.D61N 0.44 tolerated(0.08) possibly_damaging(0.525) TCGA-2F-A9KR-01 1 161479677 161479677 C A FCGR2A Missense_Mutation p.H144Q 0.34 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 1 173772172 173772172 G A CENPL Missense_Mutation p.H344Y 0.04 tolerated(0.18) benign(0.159) TCGA-2F-A9KR-01 1 173806135 173806135 C T DARS2 Nonsense_Mutation p.Q241* 0.41 TCGA-2F-A9KR-01 1 174417723 174417723 G A GPR52 Silent p.L158L 0.14 TCGA-2F-A9KR-01 1 176863734 176863734 G C ASTN1 Silent p.P968P 0.08 TCGA-2F-A9KR-01 1 180651501 180651501 C T XPR1 Silent p.F25F 0.38 TCGA-2F-A9KR-01 1 20027262 20027262 T A TMCO4 Missense_Mutation p.R461W 0.46 deleterious(0) probably_damaging(0.966) TCGA-2F-A9KR-01 1 205566908 205566908 G C MFSD4 Missense_Mutation p.G433A 0.34 deleterious(0.02) probably_damaging(1) TCGA-2F-A9KR-01 1 21071377 21071378 - T HP1BP3 Frame_Shift_Ins p.K526Efs*76 0.18 TCGA-2F-A9KR-01 1 223178660 223178660 G A DISP1 Silent p.Q1307Q 0.29 TCGA-2F-A9KR-01 1 232941094 232941094 G T MAP10 Missense_Mutation p.D109Y 0.43 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-2F-A9KR-01 1 232941107 232941107 G A MAP10 Missense_Mutation p.R113Q 0.43 tolerated_low_confidence(0.35) benign(0.417) TCGA-2F-A9KR-01 1 237586436 237586436 G A RYR2 Missense_Mutation p.R298H 0.46 probably_damaging(0.973) TCGA-2F-A9KR-01 1 241920614 241920614 G T WDR64 Silent p.V590V 0.54 TCGA-2F-A9KR-01 1 243327732 243327732 G C CEP170 Missense_Mutation p.S1177C 0.08 deleterious(0) possibly_damaging(0.738) TCGA-2F-A9KR-01 1 33747303 33747303 G A ZNF362 Missense_Mutation p.A267T 0.11 tolerated(0.13) possibly_damaging(0.788) TCGA-2F-A9KR-01 1 33956891 33956891 G C ZSCAN20 Missense_Mutation p.E345Q 0.18 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 1 40779876 40779876 C T COL9A2 Splice_Site p.X83_splice 0.36 TCGA-2F-A9KR-01 1 47279237 47279237 G T CYP4B1 Missense_Mutation p.M193I 0.13 deleterious(0.01) benign(0.106) TCGA-2F-A9KR-01 1 51048316 51048316 C G FAF1 Missense_Mutation p.E363Q 0.35 deleterious(0) possibly_damaging(0.467) TCGA-2F-A9KR-01 1 6324632 6324632 G C ACOT7 3'UTR 0.53 TCGA-2F-A9KR-01 1 67845767 67845767 G A IL12RB2 Missense_Mutation p.E606K 0.16 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KR-01 1 68942535 68942535 C T DEPDC1 3'UTR 0.31 TCGA-2F-A9KR-01 1 77094363 77094363 G A ST6GALNAC3 Missense_Mutation p.D264N 0.29 benign(0.004) TCGA-2F-A9KR-01 1 84399301 84399301 C A TTLL7 Missense_Mutation p.W346L 0.38 deleterious(0.01) probably_damaging(0.911) TCGA-2F-A9KR-01 1 93826289 93826289 A T DR1 3'UTR 0.42 TCGA-2F-A9KR-01 1 9815249 9815249 C A CLSTN1 Missense_Mutation p.Q121H 0.13 tolerated(0.1) possibly_damaging(0.779) TCGA-2F-A9KR-01 20 17475186 17475186 C A BFSP1 Nonsense_Mutation p.E511* 0.45 TCGA-2F-A9KR-01 20 19664857 19664857 C T SLC24A3 Silent p.D313D 0.06 TCGA-2F-A9KR-01 20 25284237 25284237 G A ABHD12 Silent p.L326L 0.41 TCGA-2F-A9KR-01 20 3765339 3765339 G C CENPB Missense_Mutation p.Q598E 0.39 deleterious_low_confidence(0) benign(0.197) TCGA-2F-A9KR-01 20 44170784 44170784 C A EPPIN Intron 0.43 TCGA-2F-A9KR-01 20 57568728 57568728 G A NELFCD Missense_Mutation p.R515Q 0.35 tolerated(0.12) benign(0.181) TCGA-2F-A9KR-01 20 60906117 60906117 G A LAMA5 Silent p.I1207I 0.56 TCGA-2F-A9KR-01 21 33065682 33065682 C G SCAF4 Missense_Mutation p.E480Q 0.51 benign(0.403) TCGA-2F-A9KR-01 21 34958346 34958346 C T DONSON Missense_Mutation p.E182K 0.15 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KR-01 21 43541202 43541202 G A UMODL1 Missense_Mutation p.D1027N 0.18 tolerated(0.15) possibly_damaging(0.741) TCGA-2F-A9KR-01 22 21470395 21470395 G T KB-1592A4.15 RNA 0.11 TCGA-2F-A9KR-01 22 22326320 22326320 C T TOP3B Missense_Mutation p.E105K 0.56 deleterious(0) probably_damaging(0.985) TCGA-2F-A9KR-01 22 41547874 41547874 C G EP300 Nonsense_Mutation p.S952* 0.62 TCGA-2F-A9KR-01 22 41924660 41924660 C T ACO2 3'UTR 0.18 TCGA-2F-A9KR-01 22 42456283 42456283 T A NAGA Nonstop_Mutation p.*412Cext*13 0.13 TCGA-2F-A9KR-01 22 46931751 46931751 G T CELSR1 Silent p.L439L 0.12 TCGA-2F-A9KR-01 2 100040681 100040681 G A REV1 Nonsense_Mutation p.Q537* 0.13 TCGA-2F-A9KR-01 2 10104363 10104363 G A GRHL1 Splice_Site p.X302_splice 0.25 TCGA-2F-A9KR-01 2 106498138 106498138 C T NCK2 Missense_Mutation p.S194F 0.49 deleterious(0.03) benign(0.02) TCGA-2F-A9KR-01 2 120844808 120844808 G A EPB41L5 Missense_Mutation p.D289N 0.34 deleterious(0.05) probably_damaging(0.98) TCGA-2F-A9KR-01 2 152471030 152471030 C T NEB Silent p.P3787P 0.17 TCGA-2F-A9KR-01 2 164467816 164467816 G A FIGN Missense_Mutation p.L176F 0.29 tolerated(0.06) benign(0.336) TCGA-2F-A9KR-01 2 166626724 166626724 C G GALNT3 Missense_Mutation p.D163H 0.14 tolerated(0.33) probably_damaging(0.999) TCGA-2F-A9KR-01 2 179432147 179432147 C G TTN Missense_Mutation p.A26238P 0.05 TCGA-2F-A9KR-01 2 187611849 187611849 C T FAM171B Missense_Mutation p.S199L 0.06 deleterious(0.01) possibly_damaging(0.685) TCGA-2F-A9KR-01 2 189876462 189876462 G A COL3A1 Missense_Mutation p.E1455K 0.18 unknown(0) TCGA-2F-A9KR-01 2 198482526 198482526 C G RFTN2 Missense_Mutation p.E350Q 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-2F-A9KR-01 2 207656598 207656598 C G FASTKD2 3'UTR 0.43 TCGA-2F-A9KR-01 2 239079285 239079285 G A ILKAP Silent p.S357S 0.33 TCGA-2F-A9KR-01 2 37215825 37215825 G A HEATR5B Missense_Mutation p.L1959F 0.41 tolerated(0.11) benign(0.105) TCGA-2F-A9KR-01 2 39934286 39934286 C T TMEM178A Silent p.S204S 0.13 TCGA-2F-A9KR-01 2 44209518 44209518 G C LRPPRC Missense_Mutation p.Q69E 0.20 tolerated(0.52) benign(0.003) TCGA-2F-A9KR-01 2 54080439 54080439 G A GPR75 Silent p.I485I 0.13 TCGA-2F-A9KR-01 2 55561343 55561343 C G CCDC88A Missense_Mutation p.E872Q 0.19 deleterious(0.02) benign(0.121) TCGA-2F-A9KR-01 2 61236015 61236015 C G PUS10 Missense_Mutation p.E88Q 0.13 tolerated(0.45) benign(0.004) TCGA-2F-A9KR-01 2 70502124 70502124 C T PCYOX1 Silent p.F176F 0.14 TCGA-2F-A9KR-01 2 86732977 86732977 C T CHMP3 Missense_Mutation p.E236K 0.46 deleterious(0.03) probably_damaging(0.997) TCGA-2F-A9KR-01 3 108626980 108626980 G A GUCA1C Silent p.F173F 0.10 TCGA-2F-A9KR-01 3 121508958 121508958 C T IQCB1 Missense_Mutation p.R364Q 0.05 tolerated(0.07) benign(0.012) TCGA-2F-A9KR-01 3 128629634 128629634 C T ACAD9 Silent p.F581F 0.38 TCGA-2F-A9KR-01 3 133475706 133475706 G A TF Silent p.Q241Q 0.44 TCGA-2F-A9KR-01 3 167023453 167023453 G A ZBBX Missense_Mutation p.S568L 0.44 deleterious(0.02) probably_damaging(0.983) TCGA-2F-A9KR-01 3 167750310 167750310 C A GOLIM4 Nonsense_Mutation p.E392* 0.44 TCGA-2F-A9KR-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.42 deleterious(0.04) probably_damaging(0.96) TCGA-2F-A9KR-01 3 178951979 178951979 G C PIK3CA Missense_Mutation p.E1012Q 0.38 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 3 182872003 182872003 G T LAMP3 Missense_Mutation p.Q76K 0.52 tolerated(0.11) benign(0.017) TCGA-2F-A9KR-01 3 183211916 183211916 C T KLHL6 Missense_Mutation p.R434K 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-2F-A9KR-01 3 184079284 184079284 C G CLCN2 5'UTR 0.18 TCGA-2F-A9KR-01 3 18438680 18438680 C G SATB1 Missense_Mutation p.D248H 0.35 tolerated(0.05) possibly_damaging(0.646) TCGA-2F-A9KR-01 3 186506969 186506969 G T EIF4A2 Nonsense_Mutation p.E379* 0.13 TCGA-2F-A9KR-01 3 193048927 193048927 G A ATP13A5 Silent p.L482L 0.14 TCGA-2F-A9KR-01 3 42229618 42229618 G A TRAK1 Missense_Mutation p.E188K 0.17 deleterious(0.03) possibly_damaging(0.698) TCGA-2F-A9KR-01 3 49062234 49062234 C T IMPDH2 Missense_Mutation p.E433K 0.43 deleterious(0.02) possibly_damaging(0.904) TCGA-2F-A9KR-01 3 58923412 58923412 G A C3orf67 5'UTR 0.31 TCGA-2F-A9KR-01 4 103228741 103228741 G A SLC39A8 Missense_Mutation p.S135L 0.06 deleterious(0.04) possibly_damaging(0.61) TCGA-2F-A9KR-01 4 13338910 13338910 A C HSP90AB2P RNA 0.64 TCGA-2F-A9KR-01 4 134073708 134073708 G C PCDH10 Missense_Mutation p.E805Q 0.11 tolerated(0.34) probably_damaging(0.993) TCGA-2F-A9KR-01 4 141543601 141543601 G A TBC1D9 Silent p.I1183I 0.26 TCGA-2F-A9KR-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.56 deleterious(0.01) possibly_damaging(0.594) TCGA-2F-A9KR-01 4 189020319 189020319 C G TRIML2 Missense_Mutation p.R114P 0.15 tolerated(0.19) benign(0.01) TCGA-2F-A9KR-01 4 1985033 1985033 G C NELFA 3'UTR 0.44 TCGA-2F-A9KR-01 4 248148 248148 G T ZNF876P RNA 0.27 TCGA-2F-A9KR-01 4 47565597 47565597 G T ATP10D Splice_Site p.X890_splice 0.41 TCGA-2F-A9KR-01 4 52883314 52883314 G A LRRC66 Nonsense_Mutation p.Q156* 0.40 TCGA-2F-A9KR-01 4 5827318 5827318 G C CRMP1 Silent p.P624P 0.13 TCGA-2F-A9KR-01 4 65274920 65274920 T C TECRL Silent p.P50P 0.32 TCGA-2F-A9KR-01 4 66213872 66213872 C T EPHA5 Missense_Mutation p.R853Q 0.11 deleterious(0.01) probably_damaging(0.949) TCGA-2F-A9KR-01 4 71396887 71396887 C A AMTN Silent p.A163A 0.34 TCGA-2F-A9KR-01 4 99325747 99325747 G A RAP1GDS1 Missense_Mutation p.E254K 0.05 deleterious(0) probably_damaging(0.966) TCGA-2F-A9KR-01 5 140530228 140530228 G A PCDHB6 Silent p.P130P 0.38 TCGA-2F-A9KR-01 5 140590076 140590076 G A PCDHB12 Missense_Mutation p.A533T 0.35 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2F-A9KR-01 5 140590188 140590188 C T PCDHB12 Missense_Mutation p.A570V 0.46 tolerated_low_confidence(0.05) benign(0.187) TCGA-2F-A9KR-01 5 140807740 140807740 C T PCDHGB6 Intron 0.18 TCGA-2F-A9KR-01 5 146257592 146257592 G A PPP2R2B Intron 0.21 TCGA-2F-A9KR-01 5 150925747 150925747 G A FAT2 Silent p.I1647I 0.40 TCGA-2F-A9KR-01 5 158526610 158526610 C G EBF1 5'UTR 0.19 TCGA-2F-A9KR-01 5 167944941 167944941 G A RARS Missense_Mutation p.E583K 0.38 deleterious(0) possibly_damaging(0.902) TCGA-2F-A9KR-01 5 36995749 36995749 A G NIPBL Silent p.K1049K 0.37 TCGA-2F-A9KR-01 5 59895050 59895050 G A DEPDC1B Missense_Mutation p.S427F 0.06 deleterious(0) possibly_damaging(0.615) TCGA-2F-A9KR-01 5 86705104 86705104 C T CCNH Intron 0.25 TCGA-2F-A9KR-01 6 126080415 126080415 G A HEY2 Missense_Mutation p.A161T 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-2F-A9KR-01 6 18122722 18122722 C T NHLRC1 Missense_Mutation p.R39Q 0.15 deleterious(0.02) probably_damaging(0.948) TCGA-2F-A9KR-01 6 18122780 18122780 C T NHLRC1 Missense_Mutation p.E20K 0.12 deleterious(0.01) possibly_damaging(0.744) TCGA-2F-A9KR-01 6 18122786 18122786 C G NHLRC1 Missense_Mutation p.E18Q 0.12 tolerated(0.06) possibly_damaging(0.831) TCGA-2F-A9KR-01 6 26031895 26031895 G A HIST1H3B Missense_Mutation p.R132C 0.45 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-2F-A9KR-01 6 26851275 26851275 G A GUSBP2 RNA 0.53 TCGA-2F-A9KR-01 6 27778267 27778267 C G HIST1H3H 3'UTR 0.29 TCGA-2F-A9KR-01 6 27806652 27806652 C T HIST1H2BN Silent p.F71F 0.44 TCGA-2F-A9KR-01 6 31117863 31117863 C G CCHCR1 Missense_Mutation p.V448L 0.33 tolerated(0.36) benign(0.106) TCGA-2F-A9KR-01 6 42232492 42232492 C T TRERF1 Missense_Mutation p.G529S 0.07 tolerated(0.2) probably_damaging(0.959) TCGA-2F-A9KR-01 6 57398238 57398238 A G PRIM2 Missense_Mutation p.K314R 0.11 deleterious(0) probably_damaging(1) TCGA-2F-A9KR-01 6 74354241 74354241 C T SLC17A5 Silent p.L60L 0.05 TCGA-2F-A9KR-01 6 76072585 76072585 C G FILIP1 Missense_Mutation p.E109Q 0.08 tolerated(0.21) benign(0.212) TCGA-2F-A9KR-01 6 90455237 90455237 G T MDN1 Missense_Mutation p.S1338Y 0.47 benign(0.334) TCGA-2F-A9KR-01 7 100279616 100279616 C G GIGYF1 Missense_Mutation p.E976Q 0.44 tolerated(0.5) benign(0.059) TCGA-2F-A9KR-01 7 116918151 116918151 C T WNT2 3'UTR 0.41 TCGA-2F-A9KR-01 7 123267169 123267169 G A ASB15 Missense_Mutation p.D235N 0.46 tolerated(0.33) benign(0.084) TCGA-2F-A9KR-01 7 142334807 142334807 G A TRBV20-1 Missense_Mutation p.E77K 0.22 tolerated(0.71) benign(0) TCGA-2F-A9KR-01 7 150643986 150643986 G A KCNH2 Silent p.L1103L 0.45 TCGA-2F-A9KR-01 7 2953089 2953089 C A CARD11 Nonsense_Mutation p.E951* 0.08 TCGA-2F-A9KR-01 7 40027304 40027304 C T CDK13 Missense_Mutation p.P440S 0.45 deleterious(0.04) unknown(0) TCGA-2F-A9KR-01 7 44116189 44116189 C T POLM Missense_Mutation p.D252N 0.39 tolerated(0.19) benign(0.052) TCGA-2F-A9KR-01 7 44228568 44228568 C T GCK 5'UTR 0.39 TCGA-2F-A9KR-01 7 44619138 44619138 G A TMED4 Silent p.L208L 0.45 TCGA-2F-A9KR-01 7 65444452 65444452 G A GUSB Silent p.L220L 0.14 TCGA-2F-A9KR-01 7 65444460 65444460 G A GUSB Missense_Mutation p.S217F 0.19 deleterious(0) probably_damaging(0.987) TCGA-2F-A9KR-01 7 70255462 70255462 G A AUTS2 Missense_Mutation p.R1087K 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-2F-A9KR-01 7 72856797 72856797 G A BAZ1B Missense_Mutation p.S1394F 0.46 deleterious(0.01) probably_damaging(0.975) TCGA-2F-A9KR-01 7 92732041 92732041 C T SAMD9 Missense_Mutation p.G1124S 0.41 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KR-01 8 103277499 103277499 T G UBR5 Missense_Mutation p.N2477T 0.05 tolerated(0.08) possibly_damaging(0.885) TCGA-2F-A9KR-01 8 108348395 108348395 C T ANGPT1 Silent p.K186K 0.41 TCGA-2F-A9KR-01 8 125528235 125528235 C G TATDN1 Missense_Mutation p.R80T 0.61 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KR-01 8 145049522 145049522 C A PARP10 3'Flank 0.22 TCGA-2F-A9KR-01 8 145737809 145737809 G C RECQL4 Silent p.L1007L 0.19 TCGA-2F-A9KR-01 8 146157455 146157455 C G ZNF16 Missense_Mutation p.D240H 0.25 tolerated(0.08) benign(0.008) TCGA-2F-A9KR-01 8 59764334 59764334 G A TOX Nonsense_Mutation p.Q148* 0.09 TCGA-2F-A9KR-01 8 77763773 77763773 G A ZFHX4 Missense_Mutation p.R1539H 0.51 possibly_damaging(0.715) TCGA-2F-A9KR-01 8 96166268 96166268 G A PLEKHF2 5'UTR 0.39 TCGA-2F-A9KR-01 9 103212938 103212938 C T MSANTD3 Missense_Mutation p.S173L 0.06 deleterious_low_confidence(0.01) benign(0.354) TCGA-2F-A9KR-01 9 116187297 116187297 A G C9orf43 Splice_Site p.X270_splice 0.25 TCGA-2F-A9KR-01 9 118164501 118164501 G C DEC1 3'UTR 0.77 TCGA-2F-A9KR-01 9 132890954 132890954 T C GPR107 Silent p.V540V 0.10 TCGA-2F-A9KR-01 9 140476915 140476915 C T ZMYND19 3'UTR 0.78 TCGA-2F-A9KR-01 9 35310598 35310598 C G UNC13B Missense_Mutation p.S299C 0.04 deleterious_low_confidence(0) benign(0.121) TCGA-2F-A9KR-01 9 6984264 6984264 C T KDM4C Missense_Mutation p.S405L 0.82 tolerated(0.32) benign(0.001) TCGA-2F-A9KR-01 X 111698852 111698852 G C ZCCHC16 Missense_Mutation p.R299P 0.57 deleterious(0) probably_damaging(0.993) TCGA-2F-A9KR-01 X 114141463 114141463 C T HTR2C Nonsense_Mutation p.R288* 0.04 TCGA-2F-A9KR-01 X 122799555 122799555 G C THOC2 Missense_Mutation p.L442V 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-2F-A9KR-01 X 123200024 123200024 G A STAG2 Splice_Site p.X699_splice 0.44 TCGA-2F-A9KR-01 X 130408707 130408707 G A IGSF1 Missense_Mutation p.S1211L 0.29 tolerated(0.12) probably_damaging(0.999) TCGA-2F-A9KR-01 X 150349474 150349474 C A GPR50 Missense_Mutation p.N473K 0.17 deleterious_low_confidence(0.02) benign(0.006) TCGA-2F-A9KR-01 X 32716116 32716116 C T DMD Splice_Site p.X278_splice 0.47 TCGA-2F-A9KR-01 X 41333583 41333583 G A NYX Missense_Mutation p.V293M 0.15 deleterious(0) possibly_damaging(0.893) TCGA-2F-A9KR-01 X 54114294 54114294 C A FAM120C Missense_Mutation p.W844L 0.21 deleterious(0.02) benign(0.041) TCGA-2F-A9KR-01 X 54584908 54584908 C T GNL3L Missense_Mutation p.H496Y 0.27 tolerated(0.28) benign(0.002) TCGA-2F-A9KR-01 X 54584978 54584978 C T GNL3L Missense_Mutation p.S519L 0.43 tolerated(0.22) benign(0.012) TCGA-2F-A9KR-01 X 54585050 54585050 C G GNL3L Missense_Mutation p.S543C 0.48 tolerated(0.07) benign(0.007) TCGA-2F-A9KR-01 X 69283049 69283049 G A OTUD6A Silent p.L225L 0.20 TCGA-2F-A9KR-01 X 70387242 70387242 C G NLGN3 Missense_Mutation p.S432C 0.38 deleterious(0.04) possibly_damaging(0.863) TCGA-2F-A9KR-01 X 71495439 71495439 C T RPS4X Missense_Mutation p.D73N 0.37 tolerated(0.1) benign(0.373) TCGA-2F-A9KR-01 X 73043047 73043047 C A XIST RNA 0.18 TCGA-2F-A9KR-01 X 73524406 73524406 G A ZCCHC13 Missense_Mutation p.R102H 0.38 tolerated(0.07) probably_damaging(0.912) TCGA-2F-A9KT-01 10 102732923 102732923 G A SEMA4G Silent p.Q54Q 0.33 TCGA-2F-A9KT-01 10 108469071 108469071 C G SORCS1 Missense_Mutation p.Q351H 0.23 tolerated(0.32) benign(0.333) TCGA-2F-A9KT-01 10 119003569 119003569 C G SLC18A2 Missense_Mutation p.S70C 0.41 tolerated(0.14) possibly_damaging(0.684) TCGA-2F-A9KT-01 10 11994188 11994188 C G UPF2 Missense_Mutation p.D971H 0.33 tolerated(0.33) possibly_damaging(0.466) TCGA-2F-A9KT-01 10 121411261 121411261 G A BAG3 Missense_Mutation p.G25E 0.32 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 10 12200076 12200076 T A SEC61A2 Missense_Mutation p.F316Y 0.11 deleterious(0.04) benign(0.417) TCGA-2F-A9KT-01 10 124908112 124908112 C T HMX2 Missense_Mutation p.P73L 0.26 deleterious_low_confidence(0) benign(0.057) TCGA-2F-A9KT-01 10 127697827 127697827 G C FANK1 Missense_Mutation p.D322H 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-2F-A9KT-01 10 26789960 26789960 G C APBB1IP Missense_Mutation p.E125Q 0.26 tolerated(0.08) benign(0.093) TCGA-2F-A9KT-01 10 30306753 30306753 C G KIAA1462 3'UTR 0.09 TCGA-2F-A9KT-01 10 38306230 38306230 C T ZNF33A Missense_Mutation p.H56Y 0.30 tolerated(0.07) benign(0.001) TCGA-2F-A9KT-01 10 5020120 5020120 G C AKR1C1 3'UTR 0.37 TCGA-2F-A9KT-01 10 50820320 50820320 C T SLC18A3 Missense_Mutation p.R512C 0.21 tolerated(0.07) benign(0) TCGA-2F-A9KT-01 10 50820396 50820396 C G SLC18A3 3'UTR 0.11 TCGA-2F-A9KT-01 10 52390630 52390630 C T RP11-50E11.3 RNA 0.33 TCGA-2F-A9KT-01 10 6472779 6472779 G A PRKCQ Missense_Mutation p.P653L 0.24 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 10 70253224 70253224 G C SLC25A16 Missense_Mutation p.F175L 0.24 tolerated(0.25) probably_damaging(0.999) TCGA-2F-A9KT-01 10 70644886 70644886 G T STOX1 Missense_Mutation p.G445V 0.30 tolerated(0.08) benign(0.11) TCGA-2F-A9KT-01 10 70644900 70644900 G C STOX1 Missense_Mutation p.E450Q 0.31 tolerated(0.07) benign(0.064) TCGA-2F-A9KT-01 10 87898685 87898685 G A GRID1 Missense_Mutation p.T206I 0.20 tolerated(0.07) benign(0.42) TCGA-2F-A9KT-01 10 95719016 95719016 C T PIPSL RNA 0.29 TCGA-2F-A9KT-01 10 98806806 98806806 C G SLIT1 Missense_Mutation p.E551Q 0.28 tolerated(0.11) possibly_damaging(0.589) TCGA-2F-A9KT-01 11 103908223 103908223 G A DDI1 Missense_Mutation p.E225K 0.42 deleterious(0.03) benign(0.371) TCGA-2F-A9KT-01 11 111407438 111407438 C G C11orf88 Intron 0.41 TCGA-2F-A9KT-01 11 111591258 111591258 G T SIK2 Missense_Mutation p.D518Y 0.07 deleterious(0.03) possibly_damaging(0.905) TCGA-2F-A9KT-01 11 116656300 116656300 T A ZNF259 Missense_Mutation p.Q212L 0.55 tolerated(0.24) benign(0.001) TCGA-2F-A9KT-01 11 126278201 126278201 G C ST3GAL4 Splice_Site p.X146_splice 0.29 TCGA-2F-A9KT-01 11 133801395 133801395 G A IGSF9B Missense_Mutation p.P441S 0.26 deleterious(0.02) possibly_damaging(0.779) TCGA-2F-A9KT-01 11 46817261 46817261 C A CKAP5 Missense_Mutation p.K511N 0.39 tolerated(0.34) benign(0.196) TCGA-2F-A9KT-01 11 58604799 58604799 C T GLYATL2 Silent p.E86E 0.28 TCGA-2F-A9KT-01 11 59405855 59405855 G C PATL1 3'UTR 0.16 TCGA-2F-A9KT-01 11 60665613 60665613 A C PRPF19 Missense_Mutation p.L424R 0.42 deleterious(0) possibly_damaging(0.866) TCGA-2F-A9KT-01 11 618694 618694 G T CDHR5 Missense_Mutation p.S622Y 0.27 deleterious(0.05) possibly_damaging(0.806) TCGA-2F-A9KT-01 11 618728 618728 G A CDHR5 Nonsense_Mutation p.Q611* 0.30 TCGA-2F-A9KT-01 11 619365 619365 G A CDHR5 Missense_Mutation p.S440F 0.65 deleterious(0.04) benign(0.08) TCGA-2F-A9KT-01 11 619483 619483 G A CDHR5 Silent p.F428F 0.41 TCGA-2F-A9KT-01 11 619682 619682 G A CDHR5 Missense_Mutation p.S393L 0.46 tolerated(0.07) benign(0.228) TCGA-2F-A9KT-01 11 62287510 62287510 G C AHNAK Missense_Mutation p.F4793L 0.19 possibly_damaging(0.784) TCGA-2F-A9KT-01 11 64502654 64502654 G C RASGRP2 Missense_Mutation p.Q448E 0.43 deleterious(0.02) benign(0.097) TCGA-2F-A9KT-01 11 66192531 66192531 G C NPAS4 Missense_Mutation p.E724Q 0.37 tolerated(0.39) benign(0) TCGA-2F-A9KT-01 11 66192561 66192561 G C NPAS4 Missense_Mutation p.E734Q 0.42 tolerated(0.21) benign(0.012) TCGA-2F-A9KT-01 11 67079350 67079350 G T SSH3 Nonsense_Mutation p.E658* 0.24 TCGA-2F-A9KT-01 11 69950122 69950122 G C ANO1 Missense_Mutation p.E186D 0.27 tolerated(0.24) benign(0.314) TCGA-2F-A9KT-01 11 7110354 7110354 G A RBMXL2 Translation_Start_Site p.M1? 0.24 deleterious(0) benign(0.056) TCGA-2F-A9KT-01 11 723349 723349 C T EPS8L2 Missense_Mutation p.H484Y 0.50 tolerated(0.21) benign(0.418) TCGA-2F-A9KT-01 12 102110539 102110539 G A CHPT1 Silent p.V199V 0.49 TCGA-2F-A9KT-01 12 104460055 104460055 G C HCFC2 Missense_Mutation p.E92Q 0.21 deleterious(0) probably_damaging(0.968) TCGA-2F-A9KT-01 12 105454804 105454804 G C ALDH1L2 Nonsense_Mutation p.S365* 0.24 TCGA-2F-A9KT-01 12 108926105 108926105 T C SART3 Missense_Mutation p.H521R 0.33 tolerated(0.07) possibly_damaging(0.737) TCGA-2F-A9KT-01 12 109858794 109858795 - A MYO1H Frame_Shift_Ins p.N522Kfs*3 0.17 TCGA-2F-A9KT-01 12 11035669 11035669 C T PRH1 Missense_Mutation p.V31I 0.29 tolerated_low_confidence(0.32) benign(0.208) TCGA-2F-A9KT-01 12 110925686 110925686 C G FAM216A Missense_Mutation p.S214C 0.26 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-2F-A9KT-01 12 11149555 11149555 G C TAS2R20 Nonsense_Mutation p.S307* 0.18 TCGA-2F-A9KT-01 12 11149604 11149604 G A TAS2R20 Missense_Mutation p.L291F 0.27 deleterious(0.03) benign(0.429) TCGA-2F-A9KT-01 12 11149644 11149644 G T TAS2R20 Missense_Mutation p.F277L 0.29 tolerated(0.25) benign(0.208) TCGA-2F-A9KT-01 12 11149889 11149889 G C TAS2R20 Missense_Mutation p.L196V 0.27 tolerated(0.19) possibly_damaging(0.887) TCGA-2F-A9KT-01 12 11150169 11150169 G A TAS2R20 Silent p.L102L 0.28 TCGA-2F-A9KT-01 12 121431982 121431982 G A HNF1A Silent p.Q243Q 0.27 TCGA-2F-A9KT-01 12 122958366 122958366 G A ZCCHC8 Missense_Mutation p.S601F 0.26 tolerated(0.14) benign(0.063) TCGA-2F-A9KT-01 12 133306318 133306318 G C ANKLE2 Missense_Mutation p.H810Q 0.06 tolerated(0.6) benign(0.008) TCGA-2F-A9KT-01 12 14577561 14577561 G A ATF7IP Missense_Mutation p.D238N 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-2F-A9KT-01 12 40699763 40699763 C G LRRK2 Missense_Mutation p.I1318M 0.08 deleterious(0) probably_damaging(0.937) TCGA-2F-A9KT-01 12 48110177 48110177 G A ENDOU Silent p.F219F 0.17 TCGA-2F-A9KT-01 12 4919950 4919950 C T KCNA6 Missense_Mutation p.S248F 0.24 deleterious(0.03) benign(0.34) TCGA-2F-A9KT-01 12 52946698 52946698 C T KRT71 Missense_Mutation p.R55Q 0.29 tolerated(0.13) possibly_damaging(0.871) TCGA-2F-A9KT-01 12 53937201 53937201 C A ATF7 Missense_Mutation p.K59N 0.33 deleterious(0) probably_damaging(0.95) TCGA-2F-A9KT-01 12 57006946 57006946 C G BAZ2A Missense_Mutation p.E332Q 0.29 tolerated(0.12) possibly_damaging(0.545) TCGA-2F-A9KT-01 12 57114255 57114255 C T NACA Silent p.Q353Q 0.27 TCGA-2F-A9KT-01 12 58131091 58131091 G T AGAP2 Silent p.P313P 0.41 TCGA-2F-A9KT-01 12 62931408 62931408 G A MON2 Missense_Mutation p.M680I 0.23 deleterious(0) possibly_damaging(0.792) TCGA-2F-A9KT-01 12 62932202 62932202 G C MON2 Missense_Mutation p.D761H 0.28 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KT-01 12 6637914 6637914 C T NCAPD2 Silent p.D1123D 0.27 TCGA-2F-A9KT-01 12 69967983 69967983 C G FRS2 Missense_Mutation p.Q259E 0.27 tolerated(0.09) benign(0.197) TCGA-2F-A9KT-01 12 69968168 69968168 C T FRS2 Silent p.V320V 0.34 TCGA-2F-A9KT-01 12 8248685 8248685 G C NECAP1 Nonstop_Mutation p.*276Sext*7 0.28 TCGA-2F-A9KT-01 13 101760068 101760068 C T NALCN Missense_Mutation p.E813K 0.33 deleterious(0.04) benign(0.269) TCGA-2F-A9KT-01 13 23913751 23913751 C T SACS Missense_Mutation p.V1422M 0.30 probably_damaging(0.997) TCGA-2F-A9KT-01 13 25263511 25263511 C T ATP12A Nonsense_Mutation p.Q182* 0.40 TCGA-2F-A9KT-01 13 36744695 36744695 C T SOHLH2 Silent p.Q487Q 0.27 TCGA-2F-A9KT-01 13 39262883 39262883 T G FREM2 Missense_Mutation p.L468V 0.37 deleterious(0.02) probably_damaging(0.934) TCGA-2F-A9KT-01 13 42860454 42860454 C A AKAP11 5'UTR 0.32 TCGA-2F-A9KT-01 13 46638788 46638788 C T CPB2 Nonsense_Mutation p.W264* 0.30 TCGA-2F-A9KT-01 13 61985377 61985377 C G PCDH20 Nonstop_Mutation p.*952Sext*6 0.30 TCGA-2F-A9KT-01 14 103807397 103807397 G C EIF5 3'UTR 0.41 TCGA-2F-A9KT-01 14 103987694 103987696 GCT - CKB In_Frame_Del p.Q186del 0.39 TCGA-2F-A9KT-01 14 106829777 106829777 C G IGHV4-34 Missense_Mutation p.W62C 0.14 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 14 20249270 20249270 A G OR4M1 Silent p.P263P 0.45 TCGA-2F-A9KT-01 14 22580373 22580373 G A TRAV25 5'UTR 0.33 TCGA-2F-A9KT-01 14 22947873 22947873 G A TRAJ57 Missense_Mutation p.G5E 0.21 unknown(0) TCGA-2F-A9KT-01 14 24805556 24805556 C T RIPK3 Missense_Mutation p.G461E 0.24 deleterious(0) probably_damaging(0.989) TCGA-2F-A9KT-01 14 31066667 31066667 A G G2E3 Silent p.T190T 0.37 TCGA-2F-A9KT-01 14 35873653 35873653 C A NFKBIA Missense_Mutation p.W66C 0.21 deleterious(0.04) possibly_damaging(0.49) TCGA-2F-A9KT-01 14 57268852 57268852 G C OTX2 Missense_Mutation p.I165M 0.29 deleterious(0.02) possibly_damaging(0.828) TCGA-2F-A9KT-01 14 64153232 64153232 G C SGPP1 Missense_Mutation p.S306C 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-2F-A9KT-01 14 86088362 86088362 G C FLRT2 Missense_Mutation p.K168N 0.38 deleterious(0.01) probably_damaging(0.926) TCGA-2F-A9KT-01 14 93650614 93650614 C T MOAP1 5'UTR 0.27 TCGA-2F-A9KT-01 15 101434206 101434206 C T ALDH1A3 Silent p.L195L 0.26 TCGA-2F-A9KT-01 15 34395007 34395007 C A PGBD4 Missense_Mutation p.P92H 0.30 deleterious(0) possibly_damaging(0.627) TCGA-2F-A9KT-01 15 40268996 40268996 G A EIF2AK4 Missense_Mutation p.E734K 0.20 deleterious(0.01) benign(0.029) TCGA-2F-A9KT-01 15 40751714 40751714 C T BAHD1 Nonsense_Mutation p.Q351* 0.29 TCGA-2F-A9KT-01 15 40751934 40751934 C G BAHD1 Nonsense_Mutation p.S424* 0.32 TCGA-2F-A9KT-01 15 42185251 42185251 G A SPTBN5 Silent p.I75I 0.23 TCGA-2F-A9KT-01 15 42447755 42447755 C T PLA2G4F Silent p.V48V 0.33 TCGA-2F-A9KT-01 15 42511811 42511811 C T TMEM87A Missense_Mutation p.E503K 0.24 tolerated(0.21) probably_damaging(0.971) TCGA-2F-A9KT-01 15 50279664 50279664 G T ATP8B4 Silent p.L224L 0.27 TCGA-2F-A9KT-01 15 50294401 50294401 G C ATP8B4 Nonsense_Mutation p.S152* 0.20 TCGA-2F-A9KT-01 15 59429625 59429625 C T MYO1E Missense_Mutation p.R1094Q 0.26 tolerated(0.17) probably_damaging(0.999) TCGA-2F-A9KT-01 15 75693190 75693190 C T SIN3A Missense_Mutation p.E540K 0.44 tolerated(0.2) possibly_damaging(0.828) TCGA-2F-A9KT-01 15 75694307 75694307 C T SIN3A Missense_Mutation p.R471Q 0.43 deleterious(0) possibly_damaging(0.685) TCGA-2F-A9KT-01 15 75932305 75932305 C G IMP3 Missense_Mutation p.D69H 0.20 deleterious(0.04) benign(0.07) TCGA-2F-A9KT-01 15 83428165 83428165 C G FSD2 Missense_Mutation p.E729Q 0.33 deleterious(0) probably_damaging(0.965) TCGA-2F-A9KT-01 15 90610455 90610455 C T ZNF710 Missense_Mutation p.S29F 0.22 deleterious_low_confidence(0) possibly_damaging(0.598) TCGA-2F-A9KT-01 15 93498674 93498674 C T CHD2 Missense_Mutation p.H581Y 0.21 tolerated(0.38) benign(0.065) TCGA-2F-A9KT-01 16 10992796 10992796 G C CIITA Missense_Mutation p.D125H 0.25 deleterious(0) possibly_damaging(0.897) TCGA-2F-A9KT-01 16 1816370 1816370 G A MAPK8IP3 Missense_Mutation p.D926N 0.26 deleterious(0.03) possibly_damaging(0.481) TCGA-2F-A9KT-01 16 2027238 2027238 G C TBL3 Missense_Mutation p.D542H 0.29 deleterious(0) probably_damaging(0.996) TCGA-2F-A9KT-01 16 20548602 20548602 G A ACSM2B Missense_Mutation p.S571F 0.25 deleterious(0.01) possibly_damaging(0.888) TCGA-2F-A9KT-01 16 20927023 20927023 G A LYRM1 Missense_Mutation p.R49Q 0.24 tolerated(0.51) benign(0.001) TCGA-2F-A9KT-01 16 2569364 2569364 C T RP11-20I23.1 Missense_Mutation p.H371Y 0.22 unknown(0) TCGA-2F-A9KT-01 16 2762753 2762753 G A PRSS27 Silent p.I247I 0.50 TCGA-2F-A9KT-01 16 29819028 29819028 C T MAZ Nonsense_Mutation p.Q308* 0.36 TCGA-2F-A9KT-01 16 31122481 31122481 C T BCKDK Silent p.F262F 0.36 TCGA-2F-A9KT-01 16 31144160 31144160 G C PRSS8 Silent p.L127L 0.27 TCGA-2F-A9KT-01 16 3140314 3140314 C T ZSCAN10 Missense_Mutation p.R319H 0.33 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 16 57007338 57007338 C T CETP Silent p.F282F 0.23 TCGA-2F-A9KT-01 16 67974065 67974065 G A LCAT Silent p.F355F 0.32 TCGA-2F-A9KT-01 16 74486985 74486985 G A GLG1 Intron 0.12 TCGA-2F-A9KT-01 16 81181104 81181104 C T PKD1L2 RNA 0.11 TCGA-2F-A9KT-01 16 90075285 90075285 C T DBNDD1 Missense_Mutation p.D96N 0.60 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 17 18880971 18880971 G A FAM83G Nonsense_Mutation p.Q670* 0.19 TCGA-2F-A9KT-01 17 21319000 21319000 G A KCNJ12 Missense_Mutation p.E116K 0.12 tolerated(0.55) benign(0.001) TCGA-2F-A9KT-01 17 26911348 26911348 C T SPAG5 Intron 0.26 TCGA-2F-A9KT-01 17 26919422 26919422 C G SPAG5 Missense_Mutation p.M280I 0.26 tolerated_low_confidence(0.29) benign(0.006) TCGA-2F-A9KT-01 17 28384797 28384797 G A EFCAB5 Silent p.L823L 0.31 TCGA-2F-A9KT-01 17 30685642 30685642 C T ZNF207 Missense_Mutation p.L97F 0.21 tolerated_low_confidence(0.07) benign(0.144) TCGA-2F-A9KT-01 17 30980885 30980885 G T MYO1D Silent p.V857V 0.25 TCGA-2F-A9KT-01 17 32964796 32964796 G A TMEM132E Missense_Mutation p.E834K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-2F-A9KT-01 17 34624196 34624196 C G CCL3L1 3'UTR 0.62 TCGA-2F-A9KT-01 17 35298090 35298090 C T LHX1 Missense_Mutation p.T194M 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-2F-A9KT-01 17 37866444 37866444 C T ERBB2 Missense_Mutation p.S250F 0.25 deleterious(0) probably_damaging(0.988) TCGA-2F-A9KT-01 17 38209922 38209922 G C MED24 Intron 0.27 TCGA-2F-A9KT-01 17 39084821 39084821 G C KRT23 Silent p.V225V 0.36 TCGA-2F-A9KT-01 17 40815392 40815392 C T TUBG2 Intron 0.28 TCGA-2F-A9KT-01 17 45993647 45993647 C G SP2 Missense_Mutation p.I70M 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-2F-A9KT-01 17 46136934 46136934 C T NFE2L1 Silent p.L750L 0.21 TCGA-2F-A9KT-01 17 46846401 46846401 C T TTLL6 Missense_Mutation p.A876T 0.13 tolerated_low_confidence(0.42) benign(0.022) TCGA-2F-A9KT-01 17 48452684 48452684 G C EME1 Missense_Mutation p.E39Q 0.33 tolerated(1) benign(0.003) TCGA-2F-A9KT-01 17 48452825 48452825 G A EME1 Missense_Mutation p.E86K 0.22 tolerated(0.24) benign(0.353) TCGA-2F-A9KT-01 17 48453498 48453498 G C EME1 Missense_Mutation p.E283Q 0.28 deleterious(0) possibly_damaging(0.839) TCGA-2F-A9KT-01 17 4893512 4893512 C T INCA1 Silent p.Q31Q 0.24 TCGA-2F-A9KT-01 17 55183618 55183618 G C AKAP1 Missense_Mutation p.E265Q 0.25 tolerated(0.31) benign(0.008) TCGA-2F-A9KT-01 17 57057628 57057628 G C PPM1E Missense_Mutation p.D502H 0.24 deleterious(0.03) benign(0.097) TCGA-2F-A9KT-01 17 66247009 66247009 T C AMZ2 Missense_Mutation p.Y120H 0.27 tolerated(0.11) possibly_damaging(0.885) TCGA-2F-A9KT-01 17 72769090 72769090 G C NAT9 Silent p.L93L 0.17 TCGA-2F-A9KT-01 17 7359255 7359255 G A CHRNB1 Missense_Mutation p.D454N 0.15 tolerated(0.65) possibly_damaging(0.804) TCGA-2F-A9KT-01 17 76415624 76415624 C G PGS1 Intron 0.33 TCGA-2F-A9KT-01 17 7948953 7948953 C G ALOX15B Silent p.V383V 0.12 TCGA-2F-A9KT-01 17 80045854 80045854 C G FASN Missense_Mutation p.E948Q 0.21 tolerated(0.05) benign(0.012) TCGA-2F-A9KT-01 18 12277137 12277137 C G CIDEA Missense_Mutation p.F176L 0.27 tolerated(0.3) benign(0.002) TCGA-2F-A9KT-01 18 23724562 23724562 G T PSMA8 Nonsense_Mutation p.E48* 0.30 TCGA-2F-A9KT-01 18 39593533 39593533 C A PIK3C3 Missense_Mutation p.S433Y 0.23 deleterious(0) benign(0.115) TCGA-2F-A9KT-01 18 47811486 47811486 G A CXXC1 Silent p.V266V 0.31 TCGA-2F-A9KT-01 18 77805847 77805847 G A RBFA Missense_Mutation p.E242K 0.23 deleterious(0) possibly_damaging(0.73) TCGA-2F-A9KT-01 19 10472942 10472942 C A TYK2 Missense_Mutation p.G556V 0.27 deleterious(0.03) probably_damaging(0.928) TCGA-2F-A9KT-01 19 1073685 1073685 C A HMHA1 Missense_Mutation p.F237L 0.43 tolerated(0.22) benign(0.036) TCGA-2F-A9KT-01 19 11303519 11303519 C T KANK2 Missense_Mutation p.D413N 0.23 tolerated(0.51) benign(0.115) TCGA-2F-A9KT-01 19 11305188 11305188 C G KANK2 5'UTR 0.17 TCGA-2F-A9KT-01 19 11553282 11553282 G C PRKCSH Missense_Mutation p.E184Q 0.44 deleterious(0) probably_damaging(0.99) TCGA-2F-A9KT-01 19 12951877 12951877 G A MAST1 Missense_Mutation p.R82Q 0.28 deleterious(0.03) probably_damaging(0.93) TCGA-2F-A9KT-01 19 13370393 13370393 C T CACNA1A Missense_Mutation p.G1458E 0.26 probably_damaging(0.988) TCGA-2F-A9KT-01 19 14094346 14094346 C T RFX1 Silent p.Q127Q 0.27 TCGA-2F-A9KT-01 19 15281294 15281294 C A NOTCH3 Silent p.L1654L 0.33 TCGA-2F-A9KT-01 19 15281614 15281614 C T NOTCH3 Missense_Mutation p.D1587N 0.45 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 19 17169484 17169484 C A HAUS8 Missense_Mutation p.A174S 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-2F-A9KT-01 19 17337908 17337908 G A OCEL1 Missense_Mutation p.D118N 0.21 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 19 17608118 17608118 G A SLC27A1 Missense_Mutation p.E351K 0.21 tolerated(0.44) benign(0.025) TCGA-2F-A9KT-01 19 18377821 18377821 C T KIAA1683 Missense_Mutation p.E177K 0.26 tolerated(0.07) benign(0.057) TCGA-2F-A9KT-01 19 21239729 21239729 C G ZNF430 Missense_Mutation p.F205L 0.32 tolerated(0.11) benign(0.117) TCGA-2F-A9KT-01 19 21606908 21606908 C T ZNF493 Missense_Mutation p.H483Y 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-2F-A9KT-01 19 21607218 21607218 C T ZNF493 Missense_Mutation p.S586L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-2F-A9KT-01 19 21607496 21607496 C T ZNF493 Missense_Mutation p.H679Y 0.18 deleterious(0.02) benign(0.032) TCGA-2F-A9KT-01 19 21608717 21608717 C G ZNF493 3'UTR 0.37 TCGA-2F-A9KT-01 19 21719942 21719942 C T ZNF429 Missense_Mutation p.H363Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 19 2213579 2213579 C T DOT1L Silent p.L533L 0.22 TCGA-2F-A9KT-01 19 23578220 23578220 G C ZNF91 5'UTR 0.28 TCGA-2F-A9KT-01 19 36674577 36674577 G C ZNF565 Missense_Mutation p.F97L 0.29 tolerated(0.69) probably_damaging(0.931) TCGA-2F-A9KT-01 19 37642532 37642532 G A ZNF585A Nonsense_Mutation p.Q702* 0.26 TCGA-2F-A9KT-01 19 37660865 37660865 C T ZNF585A 5'UTR 0.20 TCGA-2F-A9KT-01 19 40581984 40581984 G A ZNF780A Missense_Mutation p.S123L 0.25 tolerated(0.68) benign(0.006) TCGA-2F-A9KT-01 19 40901795 40901795 C T PRX Missense_Mutation p.E822K 0.38 tolerated(0.32) possibly_damaging(0.502) TCGA-2F-A9KT-01 19 40953899 40953899 G C BLVRB Nonsense_Mutation p.S173* 0.22 TCGA-2F-A9KT-01 19 41111518 41111518 C T LTBP4 Missense_Mutation p.S284L 0.33 deleterious(0) probably_damaging(0.959) TCGA-2F-A9KT-01 19 42383687 42383687 C G CD79A Missense_Mutation p.F154L 0.50 tolerated(0.55) benign(0.056) TCGA-2F-A9KT-01 19 4352929 4352929 G C MPND Silent p.L189L 0.20 TCGA-2F-A9KT-01 19 44174278 44174278 G A PLAUR 5'UTR 0.31 TCGA-2F-A9KT-01 19 46094816 46094816 G C GPR4 Missense_Mutation p.I103M 0.28 deleterious(0) benign(0.34) TCGA-2F-A9KT-01 19 46094963 46094963 G A GPR4 Silent p.V54V 0.33 TCGA-2F-A9KT-01 19 47572409 47572409 C G ZC3H4 Missense_Mutation p.E780Q 0.23 unknown(0) TCGA-2F-A9KT-01 19 47572568 47572568 C T ZC3H4 Missense_Mutation p.E727K 0.22 unknown(0) TCGA-2F-A9KT-01 19 48922519 48922519 G A GRIN2D Missense_Mutation p.M588I 0.45 tolerated(0.06) possibly_damaging(0.773) TCGA-2F-A9KT-01 19 49309789 49309789 G C BCAT2 Silent p.L95L 0.27 TCGA-2F-A9KT-01 19 50164058 50164058 C G IRF3 Silent p.R342R 0.33 TCGA-2F-A9KT-01 19 50365343 50365343 G C PNKP Silent p.L382L 0.10 TCGA-2F-A9KT-01 19 53958349 53958349 C G ZNF761 RNA 0.29 TCGA-2F-A9KT-01 19 6828100 6828100 G C VAV1 Missense_Mutation p.R314T 0.30 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 19 7083227 7083227 G C ZNF557 Missense_Mutation p.L255F 0.32 deleterious(0.02) probably_damaging(0.934) TCGA-2F-A9KT-01 19 7584444 7584444 C T ZNF358 Missense_Mutation p.L106F 0.23 tolerated(0.13) probably_damaging(0.994) TCGA-2F-A9KT-01 19 7593841 7593841 C T MCOLN1 Silent p.I373I 0.24 TCGA-2F-A9KT-01 19 8038618 8038618 G A ELAVL1 Nonsense_Mutation p.Q141* 0.21 TCGA-2F-A9KT-01 19 8563939 8563939 C T PRAM1 Silent p.Q251Q 0.36 TCGA-2F-A9KT-01 19 9076110 9076110 G T MUC16 Missense_Mutation p.S3779Y 0.30 unknown(0) TCGA-2F-A9KT-01 19 9361826 9361826 C T OR7E24 Missense_Mutation p.S36L 0.32 deleterious(0.01) possibly_damaging(0.792) TCGA-2F-A9KT-01 1 120050046 120050046 G A HSD3B1 5'UTR 0.28 TCGA-2F-A9KT-01 1 155291040 155291040 C T RUSC1 Intron 0.40 TCGA-2F-A9KT-01 1 155319190 155319190 C A ASH1L Missense_Mutation p.Q2494H 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.542) TCGA-2F-A9KT-01 1 155742960 155742960 G A GON4L Silent p.L798L 0.25 TCGA-2F-A9KT-01 1 155850996 155850996 T C SYT11 Silent p.Y331Y 0.28 TCGA-2F-A9KT-01 1 155851001 155851001 A G SYT11 Missense_Mutation p.K333R 0.28 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KT-01 1 155886440 155886440 G C KIAA0907 Nonsense_Mutation p.S510* 0.31 TCGA-2F-A9KT-01 1 158064865 158064865 G A KIRREL Silent p.S743S 0.26 TCGA-2F-A9KT-01 1 159904248 159904248 G C IGSF9 Missense_Mutation p.P310A 0.43 deleterious(0.01) benign(0.035) TCGA-2F-A9KT-01 1 161196718 161196720 CAA - TOMM40L In_Frame_Del p.N53del 0.12 TCGA-2F-A9KT-01 1 162824842 162824842 C T C1orf110 Missense_Mutation p.E208K 0.33 tolerated(0.07) benign(0) TCGA-2F-A9KT-01 1 177908882 177908882 G A SEC16B Missense_Mutation p.H720Y 0.44 tolerated(0.32) benign(0.002) TCGA-2F-A9KT-01 1 183933164 183933164 C G COLGALT2 Intron 0.30 TCGA-2F-A9KT-01 1 184764935 184764935 C T FAM129A Missense_Mutation p.V655M 0.14 tolerated(0.11) benign(0.106) TCGA-2F-A9KT-01 1 193150564 193150564 G C B3GALT2 Missense_Mutation p.F43L 0.23 tolerated_low_confidence(1) benign(0.003) TCGA-2F-A9KT-01 1 201983049 201983049 G C ELF3 Missense_Mutation p.E300Q 0.16 deleterious(0.01) benign(0.295) TCGA-2F-A9KT-01 1 203681094 203681094 G C ATP2B4 Missense_Mutation p.D680H 0.28 deleterious(0.01) benign(0.012) TCGA-2F-A9KT-01 1 228412343 228412343 G A OBSCN Missense_Mutation p.R1038K 0.33 benign(0.013) TCGA-2F-A9KT-01 1 228491619 228491619 C A OBSCN Nonsense_Mutation p.S4661* 0.22 TCGA-2F-A9KT-01 1 228558965 228558965 C A OBSCN Nonsense_Mutation p.S7786* 0.27 TCGA-2F-A9KT-01 1 229773447 229773447 C G URB2 Missense_Mutation p.F1029L 0.27 deleterious(0) benign(0.351) TCGA-2F-A9KT-01 1 230839995 230839995 G A AGT Silent p.L405L 0.23 TCGA-2F-A9KT-01 1 231132940 231132940 C G ARV1 Silent p.V249V 0.26 TCGA-2F-A9KT-01 1 234534179 234534179 G C TARBP1 Missense_Mutation p.Q1398E 0.32 tolerated(1) benign(0.001) TCGA-2F-A9KT-01 1 235318271 235318271 G C RBM34 Missense_Mutation p.I174M 0.32 deleterious(0.05) benign(0.04) TCGA-2F-A9KT-01 1 237947472 237947472 G A RYR2 Missense_Mutation p.E4154K 0.29 possibly_damaging(0.636) TCGA-2F-A9KT-01 1 24201081 24201081 C T CNR2 Missense_Mutation p.D343N 0.37 deleterious(0.04) possibly_damaging(0.642) TCGA-2F-A9KT-01 1 248224011 248224011 G A OR2L3 Missense_Mutation p.D10N 0.25 tolerated(0.06) benign(0.033) TCGA-2F-A9KT-01 1 33562402 33562402 C T ADC Missense_Mutation p.S283L 0.36 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 1 35351151 35351151 C G DLGAP3 Missense_Mutation p.K614N 0.20 tolerated(0.24) possibly_damaging(0.656) TCGA-2F-A9KT-01 1 3746519 3746519 C T CEP104 Missense_Mutation p.E627K 0.19 tolerated(0.07) probably_damaging(0.924) TCGA-2F-A9KT-01 1 3755528 3755528 C T CEP104 Silent p.L297L 0.27 TCGA-2F-A9KT-01 1 38188752 38188752 C G EPHA10 Missense_Mutation p.D641H 0.16 deleterious(0.02) probably_damaging(1) TCGA-2F-A9KT-01 1 39853208 39853208 C G MACF1 Silent p.L2836L 0.26 TCGA-2F-A9KT-01 1 39853307 39853307 C G MACF1 Silent p.V2869V 0.23 TCGA-2F-A9KT-01 1 39853542 39853542 C A MACF1 Missense_Mutation p.Q2948K 0.34 possibly_damaging(0.712) TCGA-2F-A9KT-01 1 40349155 40349155 G A TRIT1 Silent p.S3S 0.15 TCGA-2F-A9KT-01 1 40776811 40776811 G A COL9A2 Missense_Mutation p.A195V 0.07 deleterious(0.02) benign(0.006) TCGA-2F-A9KT-01 1 44303928 44303928 G A ST3GAL3 Missense_Mutation p.E152K 0.20 tolerated(0.07) benign(0.305) TCGA-2F-A9KT-01 1 47333762 47333762 C G CYP4Z2P RNA 0.25 TCGA-2F-A9KT-01 1 53683876 53683876 C G C1orf123 Splice_Site p.X77_splice 0.12 TCGA-2F-A9KT-01 1 54059801 54059801 C T GLIS1 Missense_Mutation p.E259K 0.41 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KT-01 1 55078163 55078163 C G FAM151A Missense_Mutation p.E266Q 0.29 tolerated(0.1) benign(0.178) TCGA-2F-A9KT-01 1 55555414 55555414 C G USP24 Splice_Site p.X2185_splice 0.50 TCGA-2F-A9KT-01 1 79383666 79383666 C A ELTD1 Nonsense_Mutation p.E511* 0.18 TCGA-2F-A9KT-01 1 90049007 90049007 C T LRRC8B Silent p.V266V 0.35 TCGA-2F-A9KT-01 20 2097550 2097550 C G STK35 Silent p.L377L 0.34 TCGA-2F-A9KT-01 20 2633484 2633484 C T NOP56 Intron 0.20 TCGA-2F-A9KT-01 20 2633520 2633520 C G NOP56 Silent p.V12V 0.27 TCGA-2F-A9KT-01 20 3673764 3673764 G C SIGLEC1 Missense_Mutation p.L1175V 0.18 tolerated(0.22) benign(0.21) TCGA-2F-A9KT-01 20 40052253 40052253 C T CHD6 Nonsense_Mutation p.W1478* 0.32 TCGA-2F-A9KT-01 20 40052318 40052318 C T CHD6 Missense_Mutation p.D1457N 0.20 deleterious(0) probably_damaging(0.995) TCGA-2F-A9KT-01 20 40052327 40052327 C T CHD6 Missense_Mutation p.E1454K 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-2F-A9KT-01 20 40052332 40052332 C T CHD6 Missense_Mutation p.R1452K 0.20 tolerated(0.11) possibly_damaging(0.855) TCGA-2F-A9KT-01 20 40053961 40053961 C T CHD6 Silent p.L1401L 0.41 TCGA-2F-A9KT-01 20 43571793 43571793 G T TOMM34 Missense_Mutation p.P296H 0.14 deleterious(0.02) possibly_damaging(0.896) TCGA-2F-A9KT-01 20 44845579 44845579 C G CDH22 Missense_Mutation p.E242Q 0.08 tolerated(0.89) benign(0.015) TCGA-2F-A9KT-01 20 47734576 47734576 C G STAU1 Missense_Mutation p.G416A 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-2F-A9KT-01 20 57428516 57428516 G A GNAS Missense_Mutation p.E66K 0.25 tolerated_low_confidence(0.17) unknown(0) TCGA-2F-A9KT-01 20 58443483 58443483 G C SYCP2 Missense_Mutation p.H1325D 0.31 tolerated(0.18) benign(0.122) TCGA-2F-A9KT-01 20 60499507 60499507 G A CDH4 Missense_Mutation p.E582K 0.30 tolerated(0.5) benign(0.028) TCGA-2F-A9KT-01 20 60511907 60511907 C T CDH4 Missense_Mutation p.S886F 0.47 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KT-01 20 62407172 62407172 G C ZBTB46 Missense_Mutation p.L361V 0.13 tolerated(0.18) benign(0.009) TCGA-2F-A9KT-01 20 62616311 62616311 G C PRPF6 Missense_Mutation p.D98H 0.15 deleterious(0.02) possibly_damaging(0.539) TCGA-2F-A9KT-01 20 9520068 9520068 C G PAK7 3'UTR 0.22 TCGA-2F-A9KT-01 21 17150261 17150261 C T USP25 Nonsense_Mutation p.Q103* 0.27 TCGA-2F-A9KT-01 21 45497618 45497618 G T TRAPPC10 Missense_Mutation p.R474S 0.28 deleterious(0) probably_damaging(0.979) TCGA-2F-A9KT-01 21 45861640 45861640 C G TRPM2 Silent p.L1484L 0.30 TCGA-2F-A9KT-01 21 46032864 46032864 C A KRTAP10-8 3'UTR 0.25 TCGA-2F-A9KT-01 22 29191670 29191670 G A XBP1 Missense_Mutation p.S217L 0.20 tolerated(0.07) possibly_damaging(0.587) TCGA-2F-A9KT-01 22 29664201 29664201 C T EWSR1 5'Flank 0.35 TCGA-2F-A9KT-01 22 38690167 38690167 G A CSNK1E Missense_Mutation p.S389F 0.41 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-2F-A9KT-01 22 38890938 38890938 C G DDX17 Missense_Mutation p.D332H 0.32 deleterious(0) probably_damaging(0.981) TCGA-2F-A9KT-01 22 44004405 44004405 C G EFCAB6 Missense_Mutation p.D880H 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-2F-A9KT-01 22 44280119 44280119 G C PNPLA5 Missense_Mutation p.F352L 0.24 tolerated(0.49) benign(0.001) TCGA-2F-A9KT-01 22 45689063 45689063 C G UPK3A Silent p.L191L 0.21 TCGA-2F-A9KT-01 22 46704598 46704598 C T GTSE1 Silent p.L174L 0.27 TCGA-2F-A9KT-01 22 50277224 50277224 A G ZBED4 5'UTR 0.28 TCGA-2F-A9KT-01 22 50885654 50885654 G A SBF1 Missense_Mutation p.R1867C 0.18 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 2 128392212 128392212 G C MYO7B Missense_Mutation p.L1863F 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-2F-A9KT-01 2 128480200 128480200 G C WDR33 Missense_Mutation p.P495A 0.26 deleterious(0) unknown(0) TCGA-2F-A9KT-01 2 128631594 128631594 C G AMMECR1L Missense_Mutation p.G72A 0.24 tolerated(0.26) benign(0) TCGA-2F-A9KT-01 2 130911284 130911284 C T SMPD4 Silent p.Q667Q 0.33 TCGA-2F-A9KT-01 2 149501316 149501316 G C EPC2 Missense_Mutation p.E147Q 0.22 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 2 152279482 152279482 C T RIF1 Nonsense_Mutation p.Q238* 0.19 TCGA-2F-A9KT-01 2 159481418 159481418 G A PKP4 Missense_Mutation p.R211K 0.27 deleterious(0.04) possibly_damaging(0.73) TCGA-2F-A9KT-01 2 162873277 162873277 C A DPP4 Splice_Site p.X523_splice 0.22 TCGA-2F-A9KT-01 2 16745302 16745302 G C FAM49A Missense_Mutation p.L85V 0.37 deleterious(0.03) probably_damaging(0.981) TCGA-2F-A9KT-01 2 173429255 173429255 C T PDK1 Silent p.I145I 0.29 TCGA-2F-A9KT-01 2 179977518 179977518 C T SESTD1 Missense_Mutation p.D632N 0.33 deleterious(0.02) benign(0.243) TCGA-2F-A9KT-01 2 196722318 196722318 C A DNAH7 Nonsense_Mutation p.E2733* 0.20 TCGA-2F-A9KT-01 2 197559809 197559809 G A CCDC150 Missense_Mutation p.E517K 0.36 tolerated(0.08) benign(0.035) TCGA-2F-A9KT-01 2 20458027 20458027 C G PUM2 Missense_Mutation p.E821Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 2 219144770 219144770 C T TMBIM1 Silent p.V94V 0.33 TCGA-2F-A9KT-01 2 219144824 219144824 C T TMBIM1 Silent p.E76E 0.29 TCGA-2F-A9KT-01 2 220078184 220078184 C G ABCB6 Missense_Mutation p.D566H 0.34 deleterious(0) probably_damaging(0.948) TCGA-2F-A9KT-01 2 220440005 220440005 C T INHA Silent p.F286F 0.41 TCGA-2F-A9KT-01 2 222429100 222429103 ACTC - EPHA4 Frame_Shift_Del p.I59Wfs*16 0.11 TCGA-2F-A9KT-01 2 227896691 227896691 G A COL4A4 Nonsense_Mutation p.Q1263* 0.35 TCGA-2F-A9KT-01 2 32249296 32249296 G C DPY30 Missense_Mutation p.S86C 0.18 deleterious(0.01) possibly_damaging(0.621) TCGA-2F-A9KT-01 2 32664625 32664625 G A BIRC6 Silent p.V1227V 0.33 TCGA-2F-A9KT-01 2 44209479 44209479 G A LRPPRC Nonsense_Mutation p.Q82* 0.38 TCGA-2F-A9KT-01 2 47739439 47739439 C T KCNK12 3'Flank 0.38 TCGA-2F-A9KT-01 2 48027214 48027214 C T MSH6 Nonsense_Mutation p.Q698* 0.28 TCGA-2F-A9KT-01 2 64808374 64808374 G A AFTPH Missense_Mutation p.D836N 0.33 deleterious(0) possibly_damaging(0.849) TCGA-2F-A9KT-01 2 71012655 71012655 C G FIGLA Missense_Mutation p.K167N 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-2F-A9KT-01 2 71577398 71577398 G A ZNF638 Silent p.L438L 0.19 TCGA-2F-A9KT-01 2 85770131 85770131 C G MAT2A Missense_Mutation p.F353L 0.39 deleterious(0.01) probably_damaging(1) TCGA-2F-A9KT-01 2 85839104 85839104 C T C2orf68 Missense_Mutation p.E2K 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.829) TCGA-2F-A9KT-01 3 10130183 10130183 G C FANCD2 Missense_Mutation p.E1173Q 0.34 tolerated(0.09) possibly_damaging(0.499) TCGA-2F-A9KT-01 3 108773704 108773704 C G MORC1 Missense_Mutation p.V401L 0.16 deleterious(0) benign(0.232) TCGA-2F-A9KT-01 3 128603586 128603586 G A ACAD9 Missense_Mutation p.E81K 0.35 tolerated(0.87) benign(0.026) TCGA-2F-A9KT-01 3 141011280 141011280 G C ACPL2 Missense_Mutation p.D226H 0.26 deleterious(0) possibly_damaging(0.728) TCGA-2F-A9KT-01 3 151129177 151129177 C G MED12L Missense_Mutation p.P1973A 0.28 tolerated_low_confidence(0.59) benign(0.13) TCGA-2F-A9KT-01 3 15115683 15115683 G A ZFYVE20 Missense_Mutation p.S654L 0.20 tolerated_low_confidence(0.17) benign(0.002) TCGA-2F-A9KT-01 3 16217181 16217181 G T GALNT15 Nonsense_Mutation p.E175* 0.31 TCGA-2F-A9KT-01 3 169500329 169500329 C T MYNN Missense_Mutation p.H433Y 0.19 deleterious(0) probably_damaging(0.948) TCGA-2F-A9KT-01 3 183472115 183472115 C A YEATS2 Missense_Mutation p.S451Y 0.21 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-2F-A9KT-01 3 184075573 184075573 G C CLCN2 Missense_Mutation p.I229M 0.32 deleterious(0.01) possibly_damaging(0.595) TCGA-2F-A9KT-01 3 184099750 184099750 C T CHRD Missense_Mutation p.S214L 0.38 tolerated(0.27) possibly_damaging(0.527) TCGA-2F-A9KT-01 3 185252680 185252680 G A LIPH Missense_Mutation p.S97F 0.24 tolerated(0.14) benign(0.053) TCGA-2F-A9KT-01 3 194147905 194147905 G C ATP13A3 Missense_Mutation p.F1008L 0.23 tolerated(1) benign(0.001) TCGA-2F-A9KT-01 3 21552384 21552384 G T ZNF385D Silent p.T136T 0.17 TCGA-2F-A9KT-01 3 42243997 42243997 G T TRAK1 Silent p.L499L 0.44 TCGA-2F-A9KT-01 3 44700744 44700744 C G ZNF35 Missense_Mutation p.Q297E 0.35 deleterious(0.01) probably_damaging(0.954) TCGA-2F-A9KT-01 3 45869964 45869964 G T LZTFL1 Silent p.L248L 0.22 TCGA-2F-A9KT-01 3 47277011 47277011 C G KIF9 Missense_Mutation p.E772Q 0.26 tolerated(0.13) benign(0.051) TCGA-2F-A9KT-01 3 48462741 48462741 G A PLXNB1 Missense_Mutation p.S569F 0.16 tolerated(0.08) benign(0.006) TCGA-2F-A9KT-01 3 48462783 48462783 G C PLXNB1 Nonsense_Mutation p.S555* 0.20 TCGA-2F-A9KT-01 3 48505529 48505529 G C ATRIP Missense_Mutation p.E658Q 0.20 deleterious(0) probably_damaging(0.994) TCGA-2F-A9KT-01 3 49043208 49043208 A C P4HTM Missense_Mutation p.S419R 0.16 tolerated(0.26) benign(0.032) TCGA-2F-A9KT-01 3 50154787 50154788 - TC RBM5 Frame_Shift_Ins p.Q767Lfs*14 0.25 TCGA-2F-A9KT-01 3 50608478 50608478 G A HEMK1 5'UTR 0.44 TCGA-2F-A9KT-01 3 65361438 65361438 G T MAGI1 Missense_Mutation p.R1060S 0.29 deleterious(0.02) probably_damaging(1) TCGA-2F-A9KT-01 3 78734976 78734976 G C ROBO1 Missense_Mutation p.S421C 0.16 deleterious(0) probably_damaging(0.923) TCGA-2F-A9KT-01 4 106746873 106746873 G C GSTCD Missense_Mutation p.K482N 0.13 deleterious(0.01) probably_damaging(0.949) TCGA-2F-A9KT-01 4 109667641 109667641 C G ETNPPL Missense_Mutation p.R406T 0.19 tolerated(0.14) possibly_damaging(0.517) TCGA-2F-A9KT-01 4 141461422 141461422 G C ELMOD2 Missense_Mutation p.R167T 0.20 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 4 141543700 141543700 C T TBC1D9 Silent p.L1150L 0.30 TCGA-2F-A9KT-01 4 141543856 141543856 C G TBC1D9 Missense_Mutation p.K1098N 0.23 tolerated(0.33) benign(0.002) TCGA-2F-A9KT-01 4 146575225 146575225 G A MMAA Missense_Mutation p.R300Q 0.35 deleterious(0.04) possibly_damaging(0.75) TCGA-2F-A9KT-01 4 147858803 147858803 T C TTC29 Missense_Mutation p.D40G 0.30 tolerated(0.37) benign(0.009) TCGA-2F-A9KT-01 4 151505142 151505142 C T MAB21L2 Silent p.L321L 0.17 TCGA-2F-A9KT-01 4 154625829 154625829 G A TLR2 Silent p.L590L 0.16 TCGA-2F-A9KT-01 4 166218861 166218861 G A KLHL2 Missense_Mutation p.R256Q 0.35 tolerated(0.32) benign(0.148) TCGA-2F-A9KT-01 4 177114209 177114209 A T SPATA4 Missense_Mutation p.F123I 0.34 tolerated(0.2) benign(0.013) TCGA-2F-A9KT-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.40 deleterious(0.01) possibly_damaging(0.594) TCGA-2F-A9KT-01 4 183245324 183245324 G C TENM3 Missense_Mutation p.D51H 0.17 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-2F-A9KT-01 4 1961244 1961244 C T WHSC1 Missense_Mutation p.S1011L 0.24 deleterious(0) probably_damaging(0.978) TCGA-2F-A9KT-01 4 1962824 1962824 C G WHSC1 Missense_Mutation p.I1106M 0.26 deleterious(0.02) probably_damaging(1) TCGA-2F-A9KT-01 4 2949345 2949345 G A NOP14 Intron 0.21 TCGA-2F-A9KT-01 4 57522052 57522052 C T HOPX Missense_Mutation p.E57K 0.20 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-2F-A9KT-01 4 74308023 74308023 G A AFP Missense_Mutation p.E165K 0.29 deleterious(0.04) probably_damaging(0.957) TCGA-2F-A9KT-01 4 8220001 8220001 G A SH3TC1 Nonsense_Mutation p.W281* 0.32 TCGA-2F-A9KT-01 4 85569849 85569849 G C CDS1 3'UTR 0.33 TCGA-2F-A9KT-01 5 138283031 138283031 C T SIL1 Silent p.A387A 0.59 TCGA-2F-A9KT-01 5 177059138 177059138 G C RP11-1277A3.2 Intron 0.41 TCGA-2F-A9KT-01 5 180043465 180043465 G A FLT4 Missense_Mutation p.R1041W 0.41 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 5 34922641 34922641 C A BRIX1 Intron 0.40 TCGA-2F-A9KT-01 5 35070329 35070329 G C PRLR Silent p.L194L 0.27 TCGA-2F-A9KT-01 5 50120762 50120762 G T PARP8 Missense_Mutation p.K627N 0.48 deleterious(0) probably_damaging(0.99) TCGA-2F-A9KT-01 5 52778834 52778834 G A FST Silent p.V70V 0.37 TCGA-2F-A9KT-01 5 54649068 54649068 C T SKIV2L2 Missense_Mutation p.R502C 0.36 deleterious(0) probably_damaging(0.983) TCGA-2F-A9KT-01 5 68661023 68661023 G C TAF9 Missense_Mutation p.S181C 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-2F-A9KT-01 5 68661087 68661087 G C TAF9 Missense_Mutation p.P160A 0.30 tolerated(0.42) benign(0.206) TCGA-2F-A9KT-01 5 79465190 79465190 G C SERINC5 Nonsense_Mutation p.S244* 0.52 TCGA-2F-A9KT-01 6 107076805 107076805 C G RTN4IP1 Missense_Mutation p.R31T 0.24 deleterious_low_confidence(0.01) benign(0.249) TCGA-2F-A9KT-01 6 10707742 10707742 G A PAK1IP1 Missense_Mutation p.D279N 0.28 tolerated(0.37) benign(0.008) TCGA-2F-A9KT-01 6 121433760 121433760 G A TBC1D32 Missense_Mutation p.S1072F 0.27 deleterious(0) possibly_damaging(0.887) TCGA-2F-A9KT-01 6 125379145 125379145 G A RNF217 Missense_Mutation p.E100K 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-2F-A9KT-01 6 135768262 135768262 C G AHI1 Missense_Mutation p.E555Q 0.34 tolerated(0.52) possibly_damaging(0.889) TCGA-2F-A9KT-01 6 136683834 136683834 G A MAP7 Missense_Mutation p.P449L 0.10 tolerated(0.08) benign(0.003) TCGA-2F-A9KT-01 6 145157000 145157000 G C UTRN Missense_Mutation p.Q3250H 0.15 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KT-01 6 152722425 152722425 C G SYNE1 Missense_Mutation p.E2293Q 0.43 benign(0.009) TCGA-2F-A9KT-01 6 155458557 155458557 G C TIAM2 Missense_Mutation p.E481Q 0.30 tolerated(0.1) benign(0.323) TCGA-2F-A9KT-01 6 155632426 155632426 C T TFB1M Missense_Mutation p.E61K 0.37 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 6 168352584 168352584 G A MLLT4 Missense_Mutation p.S1510N 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2F-A9KT-01 6 26056117 26056117 C T HIST1H1C Silent p.A180A 0.26 TCGA-2F-A9KT-01 6 31107525 31107525 C G PSORS1C1 Missense_Mutation p.S92C 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-2F-A9KT-01 6 31116219 31116219 C T CCHCR1 Missense_Mutation p.E515K 0.09 deleterious(0.03) possibly_damaging(0.902) TCGA-2F-A9KT-01 6 3154301 3154301 G C TUBB2A Missense_Mutation p.F378L 0.17 deleterious_low_confidence(0.01) benign(0.247) TCGA-2F-A9KT-01 6 31947242 31947242 C A STK19 Missense_Mutation p.L243I 0.23 tolerated(0.16) possibly_damaging(0.45) TCGA-2F-A9KT-01 6 32410353 32410353 G A HLA-DRA Missense_Mutation p.E71K 0.33 tolerated(0.09) benign(0.014) TCGA-2F-A9KT-01 6 4032499 4032499 G C PRPF4B Missense_Mutation p.E250Q 0.25 tolerated_low_confidence(0.25) probably_damaging(0.986) TCGA-2F-A9KT-01 6 42905473 42905473 G A CNPY3 Missense_Mutation p.E131K 0.14 tolerated(0.48) possibly_damaging(0.843) TCGA-2F-A9KT-01 6 42932117 42932117 G A PEX6 Silent p.L967L 0.12 TCGA-2F-A9KT-01 6 43221099 43221099 C T TTBK1 Silent p.L109L 0.09 TCGA-2F-A9KT-01 6 46644237 46644237 G A SLC25A27 3'UTR 0.25 TCGA-2F-A9KT-01 6 56397222 56397222 G A DST Silent p.P3053P 0.16 TCGA-2F-A9KT-01 6 56457003 56457003 G T DST Missense_Mutation p.Q1671K 0.17 possibly_damaging(0.889) TCGA-2F-A9KT-01 6 73821107 73821107 C T KCNQ5 Missense_Mutation p.P369L 0.23 deleterious(0) probably_damaging(0.996) TCGA-2F-A9KT-01 6 96054269 96054269 G A MANEA Silent p.L459L 0.08 TCGA-2F-A9KT-01 7 102553590 102553590 C T FBXL13 Silent p.L317L 0.20 TCGA-2F-A9KT-01 7 107353041 107353041 G T SLC26A4 Nonsense_Mutation p.E765* 0.27 TCGA-2F-A9KT-01 7 111970199 111970199 G A ZNF277 Missense_Mutation p.M243I 0.32 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KT-01 7 1131643 1131643 C T GPER1 Silent p.I93I 0.28 TCGA-2F-A9KT-01 7 113518001 113518001 G A PPP1R3A Missense_Mutation p.S1049F 0.18 deleterious(0.05) benign(0.214) TCGA-2F-A9KT-01 7 124493078 124493078 G A POT1 Missense_Mutation p.R273W 0.36 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 7 129842462 129842462 C G TMEM209 Missense_Mutation p.D81H 0.35 tolerated(0.09) probably_damaging(1) TCGA-2F-A9KT-01 7 133749216 133749216 G C EXOC4 Missense_Mutation p.E954Q 0.24 deleterious(0.02) benign(0.329) TCGA-2F-A9KT-01 7 142605933 142605933 C T TRPV5 Missense_Mutation p.R646H 0.21 tolerated(0.08) benign(0.075) TCGA-2F-A9KT-01 7 151879574 151879574 G A KMT2C Nonsense_Mutation p.Q1791* 0.24 TCGA-2F-A9KT-01 7 151917708 151917708 C - KMT2C Frame_Shift_Del p.K1205Nfs*2 0.14 TCGA-2F-A9KT-01 7 16901637 16901637 G A AGR3 Nonsense_Mutation p.Q92* 0.16 TCGA-2F-A9KT-01 7 20795255 20795255 G C ABCB5 3'UTR 0.19 TCGA-2F-A9KT-01 7 30491189 30491189 C T NOD1 Missense_Mutation p.R615K 0.43 tolerated(0.34) benign(0.01) TCGA-2F-A9KT-01 7 30491563 30491563 C G NOD1 Missense_Mutation p.E490D 0.28 tolerated(0.14) benign(0.015) TCGA-2F-A9KT-01 7 42007402 42007402 G A GLI3 Silent p.L741L 0.28 TCGA-2F-A9KT-01 7 6196420 6196420 C G USP42 Missense_Mutation p.S1226C 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-2F-A9KT-01 7 635797 635797 G A PRKAR1B Missense_Mutation p.R232W 0.20 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 7 64388421 64388423 TGT - ZNF273 In_Frame_Del p.C239del 0.18 TCGA-2F-A9KT-01 7 73815895 73815895 G C CLIP2 Missense_Mutation p.E1043Q 0.31 deleterious(0) probably_damaging(0.931) TCGA-2F-A9KT-01 7 81374403 81374403 C T HGF Missense_Mutation p.R220Q 0.30 deleterious(0.05) possibly_damaging(0.852) TCGA-2F-A9KT-01 7 91729043 91729043 G A AKAP9 Missense_Mutation p.E3586K 0.23 benign(0.125) TCGA-2F-A9KT-01 7 99048352 99048352 G A CPSF4 Missense_Mutation p.R144Q 0.13 tolerated(0.07) probably_damaging(0.934) TCGA-2F-A9KT-01 7 99274041 99274041 G A CYP3A5 Intron 0.22 TCGA-2F-A9KT-01 8 10583769 10583769 C G SOX7 Missense_Mutation p.E268Q 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-2F-A9KT-01 8 123965512 123965512 G T ZHX2 Nonsense_Mutation p.E588* 0.30 TCGA-2F-A9KT-01 8 124338144 124338144 C T ATAD2 Missense_Mutation p.E1331K 0.29 tolerated(0.33) benign(0.001) TCGA-2F-A9KT-01 8 133041348 133041348 C T OC90 Silent p.P370P 0.32 TCGA-2F-A9KT-01 8 194622 194622 G C ZNF596 Missense_Mutation p.R76T 0.13 tolerated(0.11) benign(0.051) TCGA-2F-A9KT-01 8 29003924 29003924 G T KIF13B Missense_Mutation p.P720T 0.21 deleterious(0) possibly_damaging(0.617) TCGA-2F-A9KT-01 8 41557016 41557016 C T ANK1 Missense_Mutation p.D879N 0.39 tolerated(0.15) benign(0.001) TCGA-2F-A9KT-01 8 59522183 59522183 G C NSMAF Missense_Mutation p.Q254E 0.16 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KT-01 8 61749456 61749456 C G CHD7 Missense_Mutation p.S1357C 0.28 probably_damaging(0.999) TCGA-2F-A9KT-01 8 79588083 79588083 C G ZC2HC1A Missense_Mutation p.F26L 0.12 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KT-01 8 95539061 95539061 C A KIAA1429 Missense_Mutation p.A471S 0.07 tolerated(0.29) benign(0.003) TCGA-2F-A9KT-01 9 130742408 130742408 G C FAM102A Missense_Mutation p.F3L 0.44 deleterious(0) probably_damaging(0.97) TCGA-2F-A9KT-01 9 135204116 135204116 G C SETX Missense_Mutation p.Q957E 0.63 deleterious(0.01) probably_damaging(0.996) TCGA-2F-A9KT-01 9 136321315 136321315 G C ADAMTS13 Missense_Mutation p.E1231D 0.53 tolerated(0.08) benign(0.062) TCGA-2F-A9KT-01 9 138742245 138742245 C T CAMSAP1 Missense_Mutation p.E291K 0.66 deleterious(0) possibly_damaging(0.792) TCGA-2F-A9KT-01 9 139409841 139409841 C T NOTCH1 Missense_Mutation p.E639K 0.67 deleterious(0) possibly_damaging(0.907) TCGA-2F-A9KT-01 9 139410488 139410488 C G NOTCH1 Missense_Mutation p.K538N 0.50 tolerated(0.13) possibly_damaging(0.678) TCGA-2F-A9KT-01 9 15466854 15466854 G C PSIP1 Nonsense_Mutation p.S475* 0.33 TCGA-2F-A9KT-01 9 2115850 2115850 G A SMARCA2 Missense_Mutation p.R1162H 0.41 possibly_damaging(0.812) TCGA-2F-A9KT-01 9 33443041 33443041 C T AQP3 Intron 0.50 TCGA-2F-A9KT-01 9 88293301 88293301 G C AGTPBP1 Missense_Mutation p.L80V 0.44 tolerated(0.61) benign(0.012) TCGA-2F-A9KT-01 9 91692809 91692809 G A SHC3 Silent p.I185I 0.41 TCGA-2F-A9KT-01 9 93636994 93636994 C T SYK Silent p.Y348Y 0.44 TCGA-2F-A9KT-01 9 96054670 96054670 G A WNK2 Missense_Mutation p.V1710I 0.50 unknown(0) TCGA-2F-A9KT-01 X 100105213 100105213 G A NOX1 Missense_Mutation p.H354Y 0.48 deleterious(0) probably_damaging(1) TCGA-2F-A9KT-01 X 130412726 130412726 C T IGSF1 Splice_Site p.X589_splice 0.56 TCGA-2F-A9KT-01 X 16850772 16850772 G A TXLNG Silent p.K297K 0.60 TCGA-2F-A9KT-01 X 2406963 2406963 G A ZBED1 Silent p.L600L 0.23 TCGA-2F-A9KT-01 X 47039404 47039404 C T RBM10 Missense_Mutation p.R343C 0.35 deleterious(0) probably_damaging(0.998) TCGA-2F-A9KT-01 X 53426598 53426598 C G SMC1A Missense_Mutation p.K825N 0.54 deleterious(0.04) benign(0.445) TCGA-2F-A9KT-01 X 68382055 68382055 G A PJA1 Missense_Mutation p.R343C 0.75 deleterious(0.05) benign(0.006) TCGA-2F-A9KW-01 10 104018760 104018760 G A GBF1 Missense_Mutation p.R22Q 0.31 deleterious(0) probably_damaging(0.975) TCGA-2F-A9KW-01 10 104497498 104497498 C G SFXN2 Silent p.V316V 0.39 TCGA-2F-A9KW-01 10 104497516 104497516 C G SFXN2 Silent p.L322L 0.37 TCGA-2F-A9KW-01 10 16945971 16945971 A C CUBN Missense_Mutation p.F2686V 0.41 deleterious(0.01) benign(0.365) TCGA-2F-A9KW-01 10 48416603 48416603 C A GDF2 Missense_Mutation p.G31W 0.33 deleterious(0.02) possibly_damaging(0.502) TCGA-2F-A9KW-01 10 50121828 50121828 C T LRRC18 Missense_Mutation p.A125T 0.24 tolerated(1) benign(0) TCGA-2F-A9KW-01 11 110454287 110454287 G A ARHGAP20 Silent p.N530N 0.40 TCGA-2F-A9KW-01 11 124755144 124755144 C T ROBO4 Splice_Site p.X932_splice 0.20 TCGA-2F-A9KW-01 11 1587060 1587060 G T DUSP8 5'UTR 0.35 TCGA-2F-A9KW-01 11 47282943 47282943 C T NR1H3 Silent p.L217L 0.24 TCGA-2F-A9KW-01 11 47726127 47726127 C G AGBL2 Missense_Mutation p.C185S 0.30 deleterious(0) probably_damaging(0.99) TCGA-2F-A9KW-01 11 55136252 55136252 C T OR4A15 Missense_Mutation p.S298F 0.27 tolerated_low_confidence(0.73) benign(0.024) TCGA-2F-A9KW-01 11 62430726 62430726 C G C11orf48 Missense_Mutation p.R248T 0.28 tolerated_low_confidence(0.05) possibly_damaging(0.765) TCGA-2F-A9KW-01 11 65623177 65623177 C T CFL1 Silent p.K112K 0.19 TCGA-2F-A9KW-01 11 94316728 94316728 T C PIWIL4 Missense_Mutation p.F210L 0.32 deleterious(0.03) benign(0.027) TCGA-2F-A9KW-01 11 94316737 94316737 T C PIWIL4 Splice_Site p.X212_splice 0.35 TCGA-2F-A9KW-01 12 100200462 100200462 G A ANKS1B Missense_Mutation p.T130I 0.29 deleterious(0) probably_damaging(1) TCGA-2F-A9KW-01 12 100452661 100452661 A C UHRF1BP1L Silent p.P798P 0.38 TCGA-2F-A9KW-01 12 115112401 115112401 G C TBX3 Missense_Mutation p.R447G 0.25 tolerated(0.25) benign(0.241) TCGA-2F-A9KW-01 12 130897188 130897188 G A RIMBP2 Silent p.L933L 0.26 TCGA-2F-A9KW-01 12 132249157 132249157 C T SFSWAP Missense_Mutation p.A626V 0.15 tolerated(0.16) benign(0.039) TCGA-2F-A9KW-01 12 20786633 20786633 C A PDE3A Silent p.G589G 0.47 TCGA-2F-A9KW-01 12 56495610 56495610 G A ERBB3 Missense_Mutation p.R1267Q 0.18 tolerated(0.38) benign(0.001) TCGA-2F-A9KW-01 12 57064086 57064086 G A PTGES3 Silent p.D116D 0.18 TCGA-2F-A9KW-01 12 69759433 69759433 G T YEATS4 Missense_Mutation p.K64N 0.22 deleterious(0) probably_damaging(0.963) TCGA-2F-A9KW-01 12 81648759 81648759 T A ACSS3 3'UTR 0.38 TCGA-2F-A9KW-01 13 35619479 35619479 C T NBEA Nonsense_Mutation p.Q222* 0.23 TCGA-2F-A9KW-01 14 101200824 101200824 G A DLK1 Missense_Mutation p.R248H 0.11 tolerated(0.21) benign(0.139) TCGA-2F-A9KW-01 14 23345175 23345175 G A LRP10 Missense_Mutation p.G340S 0.37 deleterious(0.02) probably_damaging(1) TCGA-2F-A9KW-01 14 69256387 69256388 - G ZFP36L1 Frame_Shift_Ins p.S294Qfs*45 0.25 TCGA-2F-A9KW-01 15 40566340 40566340 C A PAK6 Intron 0.21 TCGA-2F-A9KW-01 15 45408812 45408812 G A DUOXA2 Missense_Mutation p.E147K 0.23 deleterious(0.03) benign(0.201) TCGA-2F-A9KW-01 15 65917867 65917867 C T SLC24A1 Silent p.V483V 0.22 TCGA-2F-A9KW-01 16 21328190 21328190 G A CRYM-AS1 RNA 0.34 TCGA-2F-A9KW-01 16 21995507 21995507 G A PDZD9 3'UTR 0.30 TCGA-2F-A9KW-01 16 23417501 23417501 C T COG7 Missense_Mutation p.D520N 0.34 tolerated(0.1) benign(0.027) TCGA-2F-A9KW-01 16 58701213 58701213 A T SLC38A7 3'UTR 0.22 TCGA-2F-A9KW-01 16 89257807 89257807 G C CDH15 Missense_Mutation p.Q434H 0.25 tolerated(0.12) possibly_damaging(0.811) TCGA-2F-A9KW-01 17 10353809 10353809 G A MYH4 Missense_Mutation p.T1381M 0.10 deleterious(0) probably_damaging(0.989) TCGA-2F-A9KW-01 17 20354869 20354869 C T LGALS9B Silent p.Q282Q 0.33 TCGA-2F-A9KW-01 17 26888628 26888628 C T PIGS Missense_Mutation p.G163E 0.26 deleterious(0) probably_damaging(0.976) TCGA-2F-A9KW-01 17 27086464 27086464 C T FAM222B Silent p.T171T 0.14 TCGA-2F-A9KW-01 17 34797327 34797327 C A TBC1D3G 3'UTR 0.24 TCGA-2F-A9KW-01 17 39622368 39622368 C G KRT32 Missense_Mutation p.A177P 0.49 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KW-01 17 45747045 45747045 C G KPNB1 Missense_Mutation p.A409G 0.33 tolerated(0.15) benign(0.004) TCGA-2F-A9KW-01 17 53158478 53158478 C T STXBP4 Missense_Mutation p.P475S 0.33 tolerated(0.27) benign(0.005) TCGA-2F-A9KW-01 17 7163046 7163046 A G ELP5 3'UTR 0.35 TCGA-2F-A9KW-01 17 79657758 79657758 G T HGS Missense_Mutation p.V175L 0.20 tolerated(0.44) possibly_damaging(0.795) TCGA-2F-A9KW-01 17 8197966 8197966 C G SLC25A35 Missense_Mutation p.G54R 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-2F-A9KW-01 18 672883 672883 C T TYMS Silent p.F276F 0.43 TCGA-2F-A9KW-01 19 16918749 16918749 C G NWD1 Silent p.V1363V 0.34 TCGA-2F-A9KW-01 19 35249979 35249979 G A ZNF599 Missense_Mutation p.S576L 0.34 deleterious(0.01) possibly_damaging(0.521) TCGA-2F-A9KW-01 19 35250490 35250490 G C ZNF599 Missense_Mutation p.H406D 0.36 deleterious(0) possibly_damaging(0.67) TCGA-2F-A9KW-01 19 35524618 35524618 G A SCN1B Silent p.K141K 0.32 TCGA-2F-A9KW-01 19 37117098 37117098 C A ZNF382 Missense_Mutation p.P100H 0.33 deleterious(0.01) benign(0.179) TCGA-2F-A9KW-01 19 46216164 46216164 G A FBXO46 Missense_Mutation p.A197V 0.36 deleterious(0.02) benign(0.054) TCGA-2F-A9KW-01 19 54866849 54866849 C T LAIR1 3'UTR 0.33 TCGA-2F-A9KW-01 19 55247690 55247690 A G KIR3DL3 3'UTR 0.37 TCGA-2F-A9KW-01 1 1227018 1227018 C T SCNN1D 3'UTR 0.52 TCGA-2F-A9KW-01 1 151542215 151542215 G T TUFT1 Missense_Mutation p.R188L 0.30 deleterious(0) possibly_damaging(0.573) TCGA-2F-A9KW-01 1 152383173 152383173 C A CRNN Missense_Mutation p.G129W 0.04 deleterious(0) probably_damaging(0.988) TCGA-2F-A9KW-01 1 154965204 154965204 G C FLAD1 Missense_Mutation p.D524H 0.28 deleterious(0.03) possibly_damaging(0.724) TCGA-2F-A9KW-01 1 156640778 156640778 C T NES Missense_Mutation p.E1068K 0.27 tolerated(0.05) benign(0.037) TCGA-2F-A9KW-01 1 158517468 158517468 T A OR6Y1 Missense_Mutation p.N143I 0.22 tolerated(0.4) benign(0.042) TCGA-2F-A9KW-01 1 158984508 158984508 G T IFI16 Missense_Mutation p.G13V 0.25 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KW-01 1 160252819 160252819 G - PEX19 Frame_Shift_Del p.F87Lfs*5 0.27 TCGA-2F-A9KW-01 1 173947722 173947722 C T RC3H1 Missense_Mutation p.E336K 0.24 deleterious(0) probably_damaging(0.997) TCGA-2F-A9KW-01 1 178490307 178490307 C T TEX35 Intron 0.37 TCGA-2F-A9KW-01 1 201016693 201016693 G T CACNA1S Silent p.T1501T 0.28 TCGA-2F-A9KW-01 1 204943842 204943842 C T NFASC Silent p.N483N 0.39 TCGA-2F-A9KW-01 1 242511456 242511456 C T PLD5 Missense_Mutation p.G93E 0.31 deleterious(0.03) possibly_damaging(0.706) TCGA-2F-A9KW-01 1 27100390 27100390 G A ARID1A Splice_Site p.X1367_splice 0.48 TCGA-2F-A9KW-01 1 42922314 42922314 C T PPCS Silent p.F26F 0.38 TCGA-2F-A9KW-01 1 43308816 43308816 G A ERMAP Silent p.P447P 0.35 TCGA-2F-A9KW-01 1 93101858 93101858 C T EVI5 Silent p.V460V 0.26 TCGA-2F-A9KW-01 20 31019208 31019208 T G ASXL1 Missense_Mutation p.I268S 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-2F-A9KW-01 20 3726607 3726607 C T HSPA12B Missense_Mutation p.R202C 0.47 deleterious(0) possibly_damaging(0.556) TCGA-2F-A9KW-01 20 52193023 52193023 C A ZNF217 Missense_Mutation p.L760F 0.13 deleterious(0) probably_damaging(0.999) TCGA-2F-A9KW-01 21 10906881 10906881 C A TPTE 3'UTR 0.14 TCGA-2F-A9KW-01 22 24108149 24108149 G A CHCHD10 3'UTR 0.43 TCGA-2F-A9KW-01 22 41568577 41568577 G T EP300 Missense_Mutation p.W1509C 0.37 probably_damaging(1) TCGA-2F-A9KW-01 22 50658162 50658163 - CC TUBGCP6 Frame_Shift_Ins p.A1409Gfs*67 0.33 TCGA-2F-A9KW-01 2 179640861 179640861 C T TTN Silent p.V1910V 0.21 TCGA-2F-A9KW-01 2 32855736 32855736 G T TTC27 Missense_Mutation p.D79Y 0.33 deleterious(0) possibly_damaging(0.827) TCGA-2F-A9KW-01 2 61597522 61597522 C G USP34 Missense_Mutation p.L395F 0.19 deleterious(0) probably_damaging(0.979) TCGA-2F-A9KW-01 2 70164457 70164457 G A MXD1 Missense_Mutation p.G137S 0.30 tolerated(0.35) probably_damaging(1) TCGA-2F-A9KW-01 2 77745875 77745875 C A LRRTM4 Missense_Mutation p.V374L 0.40 tolerated(0.58) benign(0.001) TCGA-2F-A9KW-01 2 77745876 77745876 C A LRRTM4 Silent p.L373L 0.40 TCGA-2F-A9KW-01 2 98846528 98846528 C A VWA3B Silent p.I722I 0.24 TCGA-2F-A9KW-01 3 113172514 113172514 G A SPICE1 Silent p.L647L 0.14 TCGA-2F-A9KW-01 3 114069542 114069542 C T ZBTB20 Silent p.S461S 0.37 TCGA-2F-A9KW-01 3 148714218 148714218 G A GYG1 Silent p.S91S 0.44 TCGA-2F-A9KW-01 3 169644777 169644777 A T SAMD7 Nonsense_Mutation p.K243* 0.34 TCGA-2F-A9KW-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-2F-A9KW-01 3 183442264 183442264 G A YEATS2 Missense_Mutation p.D199N 0.24 tolerated(0.14) benign(0.007) TCGA-2F-A9KW-01 3 186006529 186006529 C T DGKG Missense_Mutation p.E172K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-2F-A9KW-01 3 186358168 186358168 A C FETUB 5'UTR 0.38 TCGA-2F-A9KW-01 3 196095002 196095002 T C UBXN7 Missense_Mutation p.Q244R 0.22 tolerated(0.51) benign(0.003) TCGA-2F-A9KW-01 3 196388656 196388656 T G NRROS 3'UTR 0.12 TCGA-2F-A9KW-01 3 196675227 196675227 C A PIGZ Nonsense_Mutation p.E181* 0.24 TCGA-2F-A9KW-01 3 32761640 32761640 A G CNOT10 Missense_Mutation p.E320G 0.32 deleterious(0.01) benign(0.165) TCGA-2F-A9KW-01 3 38888782 38888782 G C SCN11A Silent p.L1593L 0.35 TCGA-2F-A9KW-01 3 48266789 48266789 A G CAMP Missense_Mutation p.K133E 0.33 tolerated(0.36) benign(0) TCGA-2F-A9KW-01 3 48445992 48445992 G A PLXNB1 Silent p.I2103I 0.24 TCGA-2F-A9KW-01 3 50378728 50378728 C G ZMYND10 3'UTR 0.42 TCGA-2F-A9KW-01 3 58156514 58156514 G C FLNB 3'Flank 0.50 TCGA-2F-A9KW-01 3 71021818 71021818 G A FOXP1 Missense_Mutation p.R516C 0.51 deleterious(0) probably_damaging(1) TCGA-2F-A9KW-01 4 126328072 126328072 G A FAT4 Missense_Mutation p.G1782E 0.46 probably_damaging(0.998) TCGA-2F-A9KW-01 4 126398433 126398433 C T FAT4 Silent p.V4139V 0.44 TCGA-2F-A9KW-01 4 23830125 23830125 C A PPARGC1A Missense_Mutation p.D219Y 0.31 deleterious(0.05) probably_damaging(0.994) TCGA-2F-A9KW-01 4 70066403 70066403 G A UGT2B11 Nonsense_Mutation p.Q449* 0.31 TCGA-2F-A9KW-01 5 126791097 126791097 G T MEGF10 Silent p.L1010L 0.42 TCGA-2F-A9KW-01 5 140203331 140203331 G A PCDHA5 Silent p.P657P 0.49 TCGA-2F-A9KW-01 5 178553118 178553118 G A ADAMTS2 Silent p.T877T 0.24 TCGA-2F-A9KW-01 6 102124605 102124605 G C GRIK2 Missense_Mutation p.E217Q 0.15 tolerated(0.17) probably_damaging(0.999) TCGA-2F-A9KW-01 6 110110855 110110855 G A FIG4 Missense_Mutation p.D719N 0.17 tolerated(0.11) benign(0.063) TCGA-2F-A9KW-01 6 110768177 110768177 C T SLC22A16 Missense_Mutation p.V184I 0.35 tolerated(0.61) benign(0.173) TCGA-2F-A9KW-01 6 125233344 125233344 G A RP11-510H23.1 RNA 0.42 TCGA-2F-A9KW-01 6 139609977 139609977 G T TXLNB Missense_Mutation p.D20E 0.20 tolerated_low_confidence(0.15) benign(0.014) TCGA-2F-A9KW-01 6 144416578 144416578 G A SF3B5 Silent p.I19I 0.17 TCGA-2F-A9KW-01 6 150001152 150001152 T C LATS1 Missense_Mutation p.S818G 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-2F-A9KW-01 6 159682271 159682271 A C FNDC1 Missense_Mutation p.S1742R 0.16 deleterious(0) probably_damaging(1) TCGA-2F-A9KW-01 6 25606472 25606472 C T LRRC16A Missense_Mutation p.P1273L 0.26 deleterious_low_confidence(0.05) benign(0.239) TCGA-2F-A9KW-01 6 30619094 30619094 G C C6orf136 Missense_Mutation p.W386C 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-2F-A9KW-01 6 30879783 30879783 C T GTF2H4 Intron 0.36 TCGA-2F-A9KW-01 6 32021430 32021430 G A TNXB Silent p.P2840P 0.51 TCGA-2F-A9KW-01 6 74227631 74227631 G C EEF1A1 Missense_Mutation p.Q431E 0.18 deleterious_low_confidence(0) benign(0.292) TCGA-2F-A9KW-01 6 74227633 74227633 C G EEF1A1 Missense_Mutation p.R430T 0.18 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-2F-A9KW-01 6 93979266 93979266 G C EPHA7 Missense_Mutation p.A521G 0.14 tolerated(0.09) benign(0.296) TCGA-2F-A9KW-01 7 11101608 11101608 G A PHF14 Silent p.E850E 0.40 TCGA-2F-A9KW-01 7 113519717 113519717 A T PPP1R3A Missense_Mutation p.I477N 0.30 deleterious(0) benign(0.219) TCGA-2F-A9KW-01 7 150654541 150654541 G A KCNH2 Silent p.S322S 0.70 TCGA-2F-A9KW-01 7 156756610 156756610 G C NOM1 Missense_Mutation p.K641N 0.40 deleterious(0.02) benign(0.248) TCGA-2F-A9KW-01 7 36338756 36338756 C T EEPD1 Missense_Mutation p.R551W 0.43 deleterious(0.02) possibly_damaging(0.513) TCGA-2F-A9KW-01 7 45113961 45113961 C G CCM2 Missense_Mutation p.I357M 0.33 tolerated(0.1) possibly_damaging(0.495) TCGA-2F-A9KW-01 7 92247520 92247520 C T CDK6 Missense_Mutation p.V234M 0.25 tolerated(0.12) probably_damaging(0.938) TCGA-2F-A9KW-01 7 98575861 98575861 G A TRRAP Missense_Mutation p.D2798N 0.30 benign(0.039) TCGA-2F-A9KW-01 7 99129532 99129532 G A ZKSCAN5 Missense_Mutation p.G727D 0.33 tolerated(0.09) benign(0.034) TCGA-2F-A9KW-01 8 101960935 101960935 G A YWHAZ Silent p.V61V 0.08 TCGA-2F-A9KW-01 8 144522352 144522352 A T ZC3H3 Missense_Mutation p.S892T 0.38 tolerated(0.57) benign(0.005) TCGA-2F-A9KW-01 8 144994565 144994565 C T PLEC Missense_Mutation p.G3279S 0.33 probably_damaging(1) TCGA-2F-A9KW-01 9 107332367 107332367 G A OR13C8 Missense_Mutation p.V307I 0.22 deleterious(0.04) benign(0.062) TCGA-2F-A9KW-01 9 139311566 139311566 G A PMPCA Missense_Mutation p.C266Y 0.37 tolerated(0.46) benign(0.005) TCGA-2F-A9KW-01 9 84609801 84609804 ATCT TCA SPATA31D1 Frame_Shift_Del p.K1472Nfs*22 0.21 TCGA-2F-A9KW-01 X 107978897 107978897 C G IRS4 Silent p.A226A 0.10 TCGA-2F-A9KW-01 X 31950195 31950195 A T DMD Splice_Site p.X2254_splice 0.18 TCGA-2F-A9KW-01 X 34149314 34149314 C T FAM47A Missense_Mutation p.R361H 0.20 tolerated(1) benign(0) TCGA-2F-A9KW-01 X 39934052 39934052 C T BCOR Missense_Mutation p.G183S 0.45 deleterious(0) possibly_damaging(0.887) TCGA-2F-A9KW-01 X 48896788 48896788 C A TFE3 Missense_Mutation p.Q126H 0.45 deleterious(0) unknown(0) TCGA-2F-A9KW-01 X 76854912 76854912 T G ATRX Missense_Mutation p.N1975T 0.08 benign(0.001) TCGA-4Z-AA7M-01 10 103433254 103433254 C T FBXW4 Missense_Mutation p.S178N 0.27 deleterious(0.01) possibly_damaging(0.637) TCGA-4Z-AA7M-01 10 103557853 103557853 C G MGEA5 Missense_Mutation p.G623A 0.31 tolerated(0.69) benign(0.021) TCGA-4Z-AA7M-01 10 103909703 103909703 G A PPRC1 Missense_Mutation p.D1638N 0.21 deleterious(0) possibly_damaging(0.539) TCGA-4Z-AA7M-01 10 103920637 103920637 A T NOLC1 Nonsense_Mutation p.K510* 0.28 TCGA-4Z-AA7M-01 10 104129142 104129142 G C GBF1 Missense_Mutation p.E1049Q 0.26 deleterious(0) probably_damaging(0.98) TCGA-4Z-AA7M-01 10 104687126 104687126 C T CNNM2 Intron 0.39 TCGA-4Z-AA7M-01 10 108489812 108489812 A T SORCS1 Missense_Mutation p.D340E 0.13 tolerated(0.27) benign(0.263) TCGA-4Z-AA7M-01 10 115804344 115804344 C T ADRB1 Silent p.V151V 0.47 TCGA-4Z-AA7M-01 10 116060048 116060048 C T AFAP1L2 Missense_Mutation p.R621K 0.45 tolerated(1) benign(0) TCGA-4Z-AA7M-01 10 121189893 121189893 G A GRK5 Silent p.P180P 0.12 TCGA-4Z-AA7M-01 10 12155060 12155060 C T DHTKD1 Silent p.L772L 0.53 TCGA-4Z-AA7M-01 10 12159712 12159712 C T DHTKD1 Missense_Mutation p.T787I 0.52 tolerated(0.39) benign(0.017) TCGA-4Z-AA7M-01 10 12199015 12199015 C T SEC61A2 Silent p.L242L 0.53 TCGA-4Z-AA7M-01 10 12199024 12199024 C T SEC61A2 Silent p.L245L 0.52 TCGA-4Z-AA7M-01 10 12199922 12199922 C G SEC61A2 Missense_Mutation p.L265V 0.53 deleterious(0.04) benign(0.04) TCGA-4Z-AA7M-01 10 12199989 12199989 C T SEC61A2 Missense_Mutation p.S287F 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7M-01 10 124385474 124385474 C A DMBT1 Silent p.T1758T 0.24 TCGA-4Z-AA7M-01 10 126490428 126490428 C T FAM175B Silent p.F10F 0.17 TCGA-4Z-AA7M-01 10 127738007 127738007 C T ADAM12 Missense_Mutation p.G581R 0.21 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 10 24874510 24874510 C T ARHGAP21 Missense_Mutation p.E1570K 0.44 deleterious(0.03) possibly_damaging(0.475) TCGA-4Z-AA7M-01 10 5496393 5496393 C T NET1 Nonsense_Mutation p.R312* 0.11 TCGA-4Z-AA7M-01 10 55581507 55581507 C T PCDH15 3'UTR 0.29 TCGA-4Z-AA7M-01 10 60549213 60549213 G A BICC1 Silent p.V264V 0.27 TCGA-4Z-AA7M-01 10 61865721 61865721 C T ANK3 Silent p.E1090E 0.32 TCGA-4Z-AA7M-01 10 70105555 70105555 G C RUFY2 Silent p.L632L 0.33 TCGA-4Z-AA7M-01 10 81053263 81053263 C T ZMIZ1 Silent p.S361S 0.26 TCGA-4Z-AA7M-01 10 81373761 81373761 A T SFTPA1 Silent p.R228R 0.18 TCGA-4Z-AA7M-01 10 91498741 91498741 C T KIF20B Missense_Mutation p.S1228F 0.34 deleterious(0.03) benign(0.02) TCGA-4Z-AA7M-01 10 92617005 92617005 C T HTR7 Missense_Mutation p.D142N 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-4Z-AA7M-01 10 93390552 93390552 C T PPP1R3C Missense_Mutation p.C29Y 0.30 tolerated(1) benign(0.084) TCGA-4Z-AA7M-01 10 93749114 93749114 C T BTAF1 Silent p.I877I 0.34 TCGA-4Z-AA7M-01 10 97402927 97402927 G A ALDH18A1 Missense_Mutation p.S42F 0.22 tolerated_low_confidence(0.07) benign(0.001) TCGA-4Z-AA7M-01 10 98819900 98819900 G A SLIT1 Silent p.N319N 0.35 TCGA-4Z-AA7M-01 10 99218606 99218606 C T MMS19 Missense_Mutation p.D1006N 0.48 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7M-01 11 102221266 102221266 C A BIRC2 Silent p.L227L 0.21 TCGA-4Z-AA7M-01 11 103870931 103870931 T A PDGFD Missense_Mutation p.K59N 0.22 deleterious(0.02) benign(0.063) TCGA-4Z-AA7M-01 11 1104234 1104234 C T MUC2 Missense_Mutation p.R2809C 0.47 unknown(0) TCGA-4Z-AA7M-01 11 111405136 111405136 G A C11orf88 Splice_Site p.X161_splice 0.45 TCGA-4Z-AA7M-01 11 115047243 115047243 G A CADM1 Missense_Mutation p.A427V 0.22 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7M-01 11 118850379 118850379 G A FOXR1 Splice_Site p.X204_splice 0.21 TCGA-4Z-AA7M-01 11 119216219 119216219 G C MFRP Silent p.L184L 0.43 TCGA-4Z-AA7M-01 11 119290965 119290965 C G THY1 Missense_Mutation p.E57Q 0.37 tolerated(0.08) probably_damaging(0.914) TCGA-4Z-AA7M-01 11 12243284 12243284 C A MICAL2 Missense_Mutation p.P434T 0.27 deleterious(0) possibly_damaging(0.609) TCGA-4Z-AA7M-01 11 122931934 122931934 C T HSPA8 Silent p.Q33Q 0.47 TCGA-4Z-AA7M-01 11 122945447 122945447 C G CLMP Missense_Mutation p.E262Q 0.50 tolerated(0.05) benign(0.021) TCGA-4Z-AA7M-01 11 128910856 128910856 G A ARHGAP32 Missense_Mutation p.P324S 0.25 deleterious(0) probably_damaging(0.92) TCGA-4Z-AA7M-01 11 134179519 134179519 G A GLB1L3 Splice_Site p.X321_splice 0.29 TCGA-4Z-AA7M-01 11 14515869 14515869 G A COPB1 Nonsense_Mutation p.Q70* 0.20 TCGA-4Z-AA7M-01 11 16077389 16077389 G A SOX6 Missense_Mutation p.S387L 0.13 tolerated(0.17) benign(0.209) TCGA-4Z-AA7M-01 11 47186926 47186926 G A ARFGAP2 3'UTR 0.12 TCGA-4Z-AA7M-01 11 47260364 47260364 C T DDB2 Silent p.L416L 0.11 TCGA-4Z-AA7M-01 11 47363624 47363624 C T MYBPC3 Missense_Mutation p.D570N 0.12 deleterious(0.04) probably_damaging(0.936) TCGA-4Z-AA7M-01 11 47363703 47363703 C G MYBPC3 Missense_Mutation p.K543N 0.14 deleterious(0) possibly_damaging(0.611) TCGA-4Z-AA7M-01 11 55063047 55063047 A T TRIM51HP RNA 0.27 TCGA-4Z-AA7M-01 11 57472219 57472219 C T MED19 Silent p.Q181Q 0.36 TCGA-4Z-AA7M-01 11 57971084 57971084 G C OR1S2 Missense_Mutation p.F190L 0.29 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 11 58604522 58604522 T C GLYATL2 Missense_Mutation p.K148E 0.44 tolerated(0.75) benign(0.005) TCGA-4Z-AA7M-01 11 63257771 63257771 G C HRASLS5 Silent p.L71L 0.24 TCGA-4Z-AA7M-01 11 63764545 63764545 G A OTUB1 Silent p.V149V 0.19 TCGA-4Z-AA7M-01 11 64360269 64360269 T C SLC22A12 Missense_Mutation p.S141P 0.23 tolerated(0.08) probably_damaging(0.938) TCGA-4Z-AA7M-01 11 64374863 64374863 G T NRXN2 Silent p.L1648L 0.48 TCGA-4Z-AA7M-01 11 64428408 64428408 G A NRXN2 Nonsense_Mutation p.R668* 0.21 TCGA-4Z-AA7M-01 11 65623618 65623618 C T CFL1 Silent p.K33K 0.53 TCGA-4Z-AA7M-01 11 66108691 66108691 C T BRMS1 Missense_Mutation p.R115H 0.29 deleterious(0.03) benign(0.345) TCGA-4Z-AA7M-01 11 66633762 66633762 C A PC Missense_Mutation p.G361C 0.28 deleterious(0) probably_damaging(0.981) TCGA-4Z-AA7M-01 11 67209533 67209533 C T CORO1B Silent p.P76P 0.60 TCGA-4Z-AA7M-01 11 6898686 6898686 G A OR10A4 Missense_Mutation p.E270K 0.29 tolerated(0.25) benign(0.072) TCGA-4Z-AA7M-01 11 71946465 71946465 G C INPPL1 Missense_Mutation p.E877Q 0.45 deleterious(0.05) possibly_damaging(0.844) TCGA-4Z-AA7M-01 11 71946948 71946948 G C INPPL1 Missense_Mutation p.E933Q 0.47 deleterious(0.04) benign(0.074) TCGA-4Z-AA7M-01 11 74459943 74459943 G A RNF169 Silent p.P6P 0.38 TCGA-4Z-AA7M-01 11 88027139 88027139 G A CTSC 3'UTR 0.16 TCGA-4Z-AA7M-01 11 92534968 92534968 G A FAT3 Missense_Mutation p.R2930Q 0.23 benign(0.023) TCGA-4Z-AA7M-01 11 93463803 93463803 G C KIAA1731 3'Flank 0.42 TCGA-4Z-AA7M-01 12 104333386 104333386 T C HSP90B1 Missense_Mutation p.Y359H 0.10 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7M-01 12 11149907 11149907 G C TAS2R20 Missense_Mutation p.L190V 0.40 tolerated(0.35) benign(0.05) TCGA-4Z-AA7M-01 12 112915812 112915812 G A PTPN11 Missense_Mutation p.R362K 0.58 tolerated(0.28) benign(0.005) TCGA-4Z-AA7M-01 12 121132723 121132723 A G MLEC Missense_Mutation p.M171V 0.06 deleterious(0.01) benign(0.001) TCGA-4Z-AA7M-01 12 122492851 122492851 C G BCL7A Missense_Mutation p.Q194E 0.54 tolerated_low_confidence(0.51) benign(0.014) TCGA-4Z-AA7M-01 12 123741500 123741500 G C C12orf65 Missense_Mutation p.R141S 0.63 deleterious(0) unknown(0) TCGA-4Z-AA7M-01 12 132474528 132474528 G A EP400 Missense_Mutation p.R810H 0.36 unknown(0) TCGA-4Z-AA7M-01 12 2932046 2932046 A G ITFG2 Silent p.Q345Q 0.47 TCGA-4Z-AA7M-01 12 49415927 49415928 - A KMT2D Frame_Shift_Ins p.N5474* 0.29 TCGA-4Z-AA7M-01 12 49427850 49427874 CTGATCCAGTTGTTTCTGGATCTTG - KMT2D Frame_Shift_Del p.S3572Rfs*78 0.17 TCGA-4Z-AA7M-01 12 50149465 50149465 G C TMBIM6 Silent p.L129L 0.18 TCGA-4Z-AA7M-01 12 50188730 50188730 C T NCKAP5L Silent p.L971L 0.46 TCGA-4Z-AA7M-01 12 50232861 50232861 G A BCDIN3D Intron 0.31 TCGA-4Z-AA7M-01 12 52911010 52911010 C G KRT5 Missense_Mutation p.E367Q 0.38 tolerated(0.06) possibly_damaging(0.842) TCGA-4Z-AA7M-01 12 53876883 53876883 G - MAP3K12 Frame_Shift_Del p.S569Hfs*45 0.24 TCGA-4Z-AA7M-01 12 56194387 56194387 G C SARNP Silent p.L70L 0.11 TCGA-4Z-AA7M-01 12 56501350 56501350 C T PA2G4 Missense_Mutation p.H147Y 0.23 tolerated(0.49) benign(0.024) TCGA-4Z-AA7M-01 12 56565622 56565622 C G SMARCC2 Missense_Mutation p.E645Q 0.28 deleterious(0.04) benign(0.403) TCGA-4Z-AA7M-01 12 56822358 56822358 C G TIMELESS Silent p.V461V 0.17 TCGA-4Z-AA7M-01 12 57573143 57573143 G C LRP1 Missense_Mutation p.Q1590H 0.27 probably_damaging(0.997) TCGA-4Z-AA7M-01 12 57588463 57588463 C T LRP1 Silent p.G2724G 0.53 TCGA-4Z-AA7M-01 12 57975342 57975342 C G KIF5A Nonsense_Mutation p.S967* 0.37 TCGA-4Z-AA7M-01 12 58145447 58145447 C T CDK4 Silent p.G18G 0.25 TCGA-4Z-AA7M-01 12 65634707 65634707 C G LEMD3 Silent p.V715V 0.39 TCGA-4Z-AA7M-01 12 65634745 65634745 C G LEMD3 Missense_Mutation p.S728C 0.43 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 12 70003977 70003977 C T LRRC10 Silent p.L214L 0.32 TCGA-4Z-AA7M-01 12 70760712 70760712 C G KCNMB4 Missense_Mutation p.F66L 0.15 tolerated(0.97) benign(0.322) TCGA-4Z-AA7M-01 12 75816869 75816869 C G GLIPR1L2 Intron 0.57 TCGA-4Z-AA7M-01 12 76784340 76784340 C G OSBPL8 Missense_Mutation p.D343H 0.35 deleterious(0.02) probably_damaging(0.94) TCGA-4Z-AA7M-01 12 78570961 78570961 C T NAV3 Missense_Mutation p.S1722F 0.44 deleterious(0) possibly_damaging(0.596) TCGA-4Z-AA7M-01 12 82147760 82147760 G T PPFIA2 Missense_Mutation p.L81M 0.36 tolerated(0.07) benign(0.38) TCGA-4Z-AA7M-01 12 988877 988877 C G WNK1 Missense_Mutation p.Q838E 0.15 tolerated(0.21) possibly_damaging(0.759) TCGA-4Z-AA7M-01 13 23914843 23914843 T A SACS Missense_Mutation p.I1058L 0.27 benign(0) TCGA-4Z-AA7M-01 13 29001305 29001305 G C FLT1 Missense_Mutation p.S476C 0.20 tolerated(0.06) probably_damaging(0.972) TCGA-4Z-AA7M-01 13 32783746 32783746 G A FRY Missense_Mutation p.E1434K 0.25 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7M-01 13 34410251 34410251 C A RFC3 Nonsense_Mutation p.S297* 0.20 TCGA-4Z-AA7M-01 13 39425236 39425236 G C FREM2 Missense_Mutation p.D2245H 0.23 tolerated(0.11) benign(0.037) TCGA-4Z-AA7M-01 13 39585453 39585453 C T PROSER1 3'UTR 0.23 TCGA-4Z-AA7M-01 13 39585517 39585517 C G PROSER1 Missense_Mutation p.Q940H 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-4Z-AA7M-01 13 42442531 42442531 G A VWA8 Missense_Mutation p.S388F 0.32 tolerated(0.13) benign(0.001) TCGA-4Z-AA7M-01 13 43362835 43362835 C T FAM216B Missense_Mutation p.S110L 0.18 deleterious(0) possibly_damaging(0.755) TCGA-4Z-AA7M-01 13 46054311 46054311 G A COG3 Silent p.L145L 0.12 TCGA-4Z-AA7M-01 13 50589677 50589677 C G KCNRG Missense_Mutation p.F16L 0.23 tolerated(0.07) benign(0.443) TCGA-4Z-AA7M-01 13 50589715 50589715 C T KCNRG Missense_Mutation p.S29F 0.18 deleterious(0) probably_damaging(0.966) TCGA-4Z-AA7M-01 13 50589920 50589920 C T KCNRG Silent p.L97L 0.24 TCGA-4Z-AA7M-01 13 61041466 61041466 C G TDRD3 Missense_Mutation p.L150V 0.38 deleterious(0) possibly_damaging(0.698) TCGA-4Z-AA7M-01 14 100835549 100835549 C T WARS 5'UTR 0.45 TCGA-4Z-AA7M-01 14 104472782 104472782 A C TDRD9 Missense_Mutation p.E590D 0.65 tolerated(0.28) benign(0.107) TCGA-4Z-AA7M-01 14 104472828 104472828 C T TDRD9 Nonsense_Mutation p.Q606* 0.63 TCGA-4Z-AA7M-01 14 105414540 105414540 G C AHNAK2 Silent p.L2416L 0.46 TCGA-4Z-AA7M-01 14 107113899 107113899 C G IGHV3-64 Missense_Mutation p.E66Q 0.19 tolerated_low_confidence(0.15) benign(0.446) TCGA-4Z-AA7M-01 14 20528872 20528872 C G OR4L1 Silent p.V223V 0.47 TCGA-4Z-AA7M-01 14 20585728 20585728 G T OR4K17 Nonsense_Mutation p.E55* 0.20 TCGA-4Z-AA7M-01 14 24517432 24517432 G C LRRC16B 5'Flank 0.63 TCGA-4Z-AA7M-01 14 39583536 39583536 G A GEMIN2 Silent p.L9L 0.57 TCGA-4Z-AA7M-01 14 39583576 39583576 G C GEMIN2 Missense_Mutation p.E23Q 0.65 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 14 45473381 45473381 C G FAM179B Missense_Mutation p.P819R 0.43 deleterious(0) probably_damaging(0.982) TCGA-4Z-AA7M-01 14 45478265 45478265 C G FAM179B Missense_Mutation p.I1018M 0.63 tolerated(0.06) possibly_damaging(0.521) TCGA-4Z-AA7M-01 14 52907320 52907320 C G TXNDC16 Missense_Mutation p.Q655H 0.51 tolerated(0.1) benign(0.013) TCGA-4Z-AA7M-01 14 53513497 53513497 C T DDHD1 Missense_Mutation p.D898N 0.26 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-4Z-AA7M-01 14 57103286 57103286 G A TMEM260 Silent p.V613V 0.61 TCGA-4Z-AA7M-01 14 64682864 64682864 G A SYNE2 Intron 0.60 TCGA-4Z-AA7M-01 14 68159213 68159213 C G RDH11 Silent p.R97R 0.24 TCGA-4Z-AA7M-01 14 79432495 79432495 T C NRXN3 Silent p.N468N 0.28 TCGA-4Z-AA7M-01 14 89656765 89656765 C G FOXN3 Missense_Mutation p.M258I 0.54 deleterious(0.02) benign(0.018) TCGA-4Z-AA7M-01 14 93717919 93717919 G A BTBD7 Missense_Mutation p.T611M 0.23 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7M-01 14 95081112 95081112 G C SERPINA3 Missense_Mutation p.E112Q 0.62 deleterious(0.01) possibly_damaging(0.804) TCGA-4Z-AA7M-01 15 22368920 22368920 C T OR4M2 Silent p.L115L 0.12 TCGA-4Z-AA7M-01 15 23261939 23261939 C T GOLGA8I Missense_Mutation p.R351W 0.18 deleterious(0.04) benign(0.031) TCGA-4Z-AA7M-01 15 25312988 25312988 G A SNORD116-7 RNA 0.35 TCGA-4Z-AA7M-01 15 28361860 28361860 G A HERC2 Silent p.L4520L 0.35 TCGA-4Z-AA7M-01 15 29560984 29560984 G A NDNL2 3'UTR 0.35 TCGA-4Z-AA7M-01 15 33878240 33878240 G C RYR3 Missense_Mutation p.E571Q 0.33 probably_damaging(1) TCGA-4Z-AA7M-01 15 34080600 34080600 C A RYR3 Silent p.V3257V 0.16 TCGA-4Z-AA7M-01 15 41228930 41228930 C A DLL4 Missense_Mutation p.A582D 0.19 deleterious(0.03) benign(0.236) TCGA-4Z-AA7M-01 15 42041716 42041716 G A MGA Missense_Mutation p.E1971K 0.34 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-4Z-AA7M-01 15 42138406 42138406 G C PLA2G4B Missense_Mutation p.E767Q 0.42 deleterious(0.01) probably_damaging(0.91) TCGA-4Z-AA7M-01 15 42148610 42148610 G A SPTBN5 Nonsense_Mutation p.Q2999* 0.25 TCGA-4Z-AA7M-01 15 43067545 43067545 C T TTBK2 Missense_Mutation p.E596K 0.19 tolerated(0.06) benign(0.005) TCGA-4Z-AA7M-01 15 43817838 43817838 G C MAP1A Missense_Mutation p.Q1389H 0.27 benign(0.008) TCGA-4Z-AA7M-01 15 43817926 43817926 G C MAP1A Missense_Mutation p.D1419H 0.42 possibly_damaging(0.452) TCGA-4Z-AA7M-01 15 44048938 44048938 G T PDIA3 Missense_Mutation p.G113V 0.14 tolerated(0.07) benign(0.214) TCGA-4Z-AA7M-01 15 44859691 44859691 G A SPG11 Missense_Mutation p.R2229W 0.13 deleterious(0) probably_damaging(0.942) TCGA-4Z-AA7M-01 15 45491080 45491080 A G SHF Missense_Mutation p.S65P 0.23 tolerated_low_confidence(0.35) benign(0.307) TCGA-4Z-AA7M-01 15 50226248 50226248 G C ATP8B4 Silent p.L473L 0.37 TCGA-4Z-AA7M-01 15 50489792 50489792 G T SLC27A2 Missense_Mutation p.D192Y 0.41 tolerated(0.06) benign(0.192) TCGA-4Z-AA7M-01 15 51350635 51350635 C G TNFAIP8L3 Missense_Mutation p.D108H 0.25 deleterious(0.01) benign(0.055) TCGA-4Z-AA7M-01 15 55964653 55964653 G A PRTG Silent p.L677L 0.39 TCGA-4Z-AA7M-01 15 58974397 58974397 T C ADAM10 Missense_Mutation p.Y108C 0.41 tolerated(0.11) possibly_damaging(0.704) TCGA-4Z-AA7M-01 15 67495199 67495199 C G AAGAB Missense_Mutation p.R303T 0.18 deleterious(0.04) possibly_damaging(0.776) TCGA-4Z-AA7M-01 15 71341889 71341889 G C LRRC49 Missense_Mutation p.E672Q 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-4Z-AA7M-01 15 74708969 74708969 C T SEMA7A Missense_Mutation p.D250N 0.41 deleterious(0.01) possibly_damaging(0.821) TCGA-4Z-AA7M-01 15 84700134 84700134 C T ADAMTSL3 Silent p.H1568H 0.26 TCGA-4Z-AA7M-01 15 90335702 90335702 C G ANPEP Missense_Mutation p.E781Q 0.27 tolerated(0.5) benign(0.016) TCGA-4Z-AA7M-01 16 10274188 10274188 C T GRIN2A Silent p.A27A 0.10 TCGA-4Z-AA7M-01 16 19067983 19067983 C T TMC7 Missense_Mutation p.S664F 0.30 deleterious(0) probably_damaging(0.986) TCGA-4Z-AA7M-01 16 20387489 20387489 C G PDILT Missense_Mutation p.L148F 0.29 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7M-01 16 2647187 2647187 C T PDPK1 Missense_Mutation p.P489S 0.64 deleterious(0) possibly_damaging(0.566) TCGA-4Z-AA7M-01 16 27763243 27763243 C A KIAA0556 Silent p.R1184R 0.12 TCGA-4Z-AA7M-01 16 29818814 29818814 G C MAZ Silent p.L236L 0.23 TCGA-4Z-AA7M-01 16 29871946 29871946 C T CDIPT Missense_Mutation p.D124N 0.54 tolerated(0.06) benign(0.117) TCGA-4Z-AA7M-01 16 30364574 30364574 C G CD2BP2 Silent p.V281V 0.39 TCGA-4Z-AA7M-01 16 30364878 30364878 C G CD2BP2 Missense_Mutation p.D207H 0.33 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7M-01 16 30365073 30365073 C G CD2BP2 Missense_Mutation p.E142Q 0.56 tolerated(0.29) benign(0.094) TCGA-4Z-AA7M-01 16 30365963 30365963 C G CD2BP2 Missense_Mutation p.E14Q 0.40 tolerated(0.27) benign(0.004) TCGA-4Z-AA7M-01 16 30365991 30365991 C T CD2BP2 Silent p.R4R 0.39 TCGA-4Z-AA7M-01 16 30365994 30365994 C T CD2BP2 Silent p.K3K 0.40 TCGA-4Z-AA7M-01 16 30389934 30389934 T G SEPT1 Missense_Mutation p.E343D 0.56 benign(0.402) TCGA-4Z-AA7M-01 16 30495278 30495278 G A ITGAL Missense_Mutation p.G285R 0.17 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 16 30972767 30972767 C T SETD1A Silent p.F142F 0.12 TCGA-4Z-AA7M-01 16 31089780 31089780 C T ZNF646 Missense_Mutation p.S712L 0.30 tolerated(0.41) benign(0.001) TCGA-4Z-AA7M-01 16 31476169 31476169 C T ARMC5 Missense_Mutation p.R609C 0.57 deleterious(0.02) benign(0.011) TCGA-4Z-AA7M-01 16 3349687 3349687 C T TIGD7 Missense_Mutation p.E310K 0.56 tolerated(0.34) benign(0.067) TCGA-4Z-AA7M-01 16 3349798 3349798 C G TIGD7 Missense_Mutation p.E273Q 0.53 tolerated(0.07) probably_damaging(0.989) TCGA-4Z-AA7M-01 16 3350074 3350074 C T TIGD7 Missense_Mutation p.D181N 0.59 tolerated(0.24) possibly_damaging(0.819) TCGA-4Z-AA7M-01 16 4385105 4385105 C G GLIS2 Silent p.V189V 0.53 TCGA-4Z-AA7M-01 16 4790489 4790489 G A C16orf71 Silent p.R204R 0.68 TCGA-4Z-AA7M-01 16 4790567 4790567 G T C16orf71 Silent p.V230V 0.45 TCGA-4Z-AA7M-01 16 4949357 4949357 A G PPL Missense_Mutation p.L212P 0.21 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 16 57741527 57741527 C G CCDC135 Missense_Mutation p.I338M 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-4Z-AA7M-01 16 57761219 57761219 G A CCDC135 Silent p.E698E 0.18 TCGA-4Z-AA7M-01 16 58568057 58568057 C T CNOT1 Silent p.L1963L 0.11 TCGA-4Z-AA7M-01 16 58571020 58571020 G C CNOT1 Nonsense_Mutation p.S1840* 0.25 TCGA-4Z-AA7M-01 16 58571854 58571854 G C CNOT1 Missense_Mutation p.F1785L 0.55 tolerated(0.64) benign(0.009) TCGA-4Z-AA7M-01 16 64984856 64984856 G A CDH11 Silent p.L570L 0.33 TCGA-4Z-AA7M-01 16 736875 736875 C G WDR24 Missense_Mutation p.E401Q 0.53 tolerated(0.17) benign(0.055) TCGA-4Z-AA7M-01 16 84212582 84212582 G A TAF1C Nonsense_Mutation p.Q859* 0.55 TCGA-4Z-AA7M-01 16 84214785 84214785 G A TAF1C Missense_Mutation p.P417L 0.44 deleterious(0.04) benign(0.09) TCGA-4Z-AA7M-01 17 10258249 10258249 G C MYH13 Missense_Mutation p.F288L 0.46 deleterious(0) probably_damaging(0.988) TCGA-4Z-AA7M-01 17 10265435 10265435 C T MYH13 Missense_Mutation p.D169N 0.31 tolerated(0.35) benign(0.004) TCGA-4Z-AA7M-01 17 15965075 15965075 C G NCOR1 Missense_Mutation p.E1841Q 0.52 probably_damaging(0.993) TCGA-4Z-AA7M-01 17 1657609 1657609 C T SERPINF2 Silent p.I419I 0.47 TCGA-4Z-AA7M-01 17 1657612 1657612 C T SERPINF2 Silent p.F420F 0.47 TCGA-4Z-AA7M-01 17 25639487 25639487 C T WSB1 3'UTR 0.20 TCGA-4Z-AA7M-01 17 27244422 27244422 C G PHF12 Missense_Mutation p.D339H 0.49 deleterious(0) possibly_damaging(0.75) TCGA-4Z-AA7M-01 17 27244465 27244465 C T PHF12 Silent p.L324L 0.42 TCGA-4Z-AA7M-01 17 2867251 2867251 G T RAP1GAP2 Silent p.G127G 0.44 TCGA-4Z-AA7M-01 17 29123330 29123330 C T CRLF3 Missense_Mutation p.D151N 0.48 deleterious(0) possibly_damaging(0.691) TCGA-4Z-AA7M-01 17 29483132 29483132 T C NF1 Silent p.N64N 0.11 TCGA-4Z-AA7M-01 17 29677228 29677228 G A NF1 Missense_Mutation p.R2450Q 0.15 deleterious(0) probably_damaging(0.945) TCGA-4Z-AA7M-01 17 33288933 33288933 G A ZNF830 Silent p.A116A 0.63 TCGA-4Z-AA7M-01 17 33520789 33520789 G T SLC35G3 Missense_Mutation p.L180I 0.08 tolerated(0.43) possibly_damaging(0.459) TCGA-4Z-AA7M-01 17 33585826 33585826 G C SLFN5 Missense_Mutation p.Q39H 0.68 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7M-01 17 34073364 34073364 G C GAS2L2 Silent p.P384P 0.48 TCGA-4Z-AA7M-01 17 34234004 34234004 T A AC015849.16 RNA 0.45 TCGA-4Z-AA7M-01 17 40556833 40556833 C T PTRF Missense_Mutation p.D349N 0.14 tolerated(0.15) benign(0.187) TCGA-4Z-AA7M-01 17 40948536 40948536 C T WNK4 Silent p.T1223T 0.22 TCGA-4Z-AA7M-01 17 40958808 40958808 G A CNTD1 Missense_Mutation p.E233K 0.29 deleterious(0.03) benign(0.223) TCGA-4Z-AA7M-01 17 43215295 43215295 C T ACBD4 Silent p.S209S 0.23 TCGA-4Z-AA7M-01 17 45736018 45736018 G C KPNB1 Missense_Mutation p.D210H 0.54 deleterious(0.01) benign(0.346) TCGA-4Z-AA7M-01 17 4804916 4804916 G C CHRNE Missense_Mutation p.Q169E 0.52 tolerated(0.33) benign(0.041) TCGA-4Z-AA7M-01 17 48703691 48703691 C T CACNA1G Missense_Mutation p.P2238L 0.31 tolerated_low_confidence(0.45) benign(0) TCGA-4Z-AA7M-01 17 50235175 50235175 T A CA10 5'UTR 0.17 TCGA-4Z-AA7M-01 17 5485176 5485176 C T NLRP1 Intron 0.59 TCGA-4Z-AA7M-01 17 56404972 56404972 C T BZRAP1 Missense_Mutation p.E104K 0.54 tolerated_low_confidence(0.31) benign(0.005) TCGA-4Z-AA7M-01 17 57290598 57290598 G C SMG8 Missense_Mutation p.R805T 0.12 deleterious(0.01) benign(0.033) TCGA-4Z-AA7M-01 17 7412359 7412359 G A POLR2A Missense_Mutation p.E1188K 0.50 probably_damaging(0.992) TCGA-4Z-AA7M-01 17 75196578 75196578 G A SEC14L1 Missense_Mutation p.E278K 0.26 tolerated(0.12) possibly_damaging(0.547) TCGA-4Z-AA7M-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.61 deleterious(0.04) possibly_damaging(0.83) TCGA-4Z-AA7M-01 17 76167919 76167919 G A SYNGR2 Missense_Mutation p.A193T 0.35 tolerated(0.61) benign(0.007) TCGA-4Z-AA7M-01 17 76171688 76171688 G C TK1 Missense_Mutation p.I105M 0.41 deleterious(0) probably_damaging(0.963) TCGA-4Z-AA7M-01 18 19996516 19996516 T G CTAGE1 Missense_Mutation p.K420T 0.23 tolerated(0.39) benign(0.039) TCGA-4Z-AA7M-01 18 2892247 2892247 C A EMILIN2 Missense_Mutation p.H708N 0.14 tolerated(0.37) benign(0.003) TCGA-4Z-AA7M-01 18 47018040 47018040 C G RPL17 5'UTR 0.38 TCGA-4Z-AA7M-01 18 56149148 56149148 C A ALPK2 Missense_Mutation p.Q2140H 0.35 tolerated(0.08) possibly_damaging(0.907) TCGA-4Z-AA7M-01 18 61306888 61306888 C A SERPINB4 Nonsense_Mutation p.E198* 0.38 TCGA-4Z-AA7M-01 18 67993328 67993328 C T SOCS6 Missense_Mutation p.S475F 0.25 deleterious(0) probably_damaging(0.958) TCGA-4Z-AA7M-01 18 72913797 72913797 C G ZADH2 Missense_Mutation p.E236D 0.27 tolerated(0.07) benign(0.048) TCGA-4Z-AA7M-01 19 1074147 1074147 G A HMHA1 Missense_Mutation p.E295K 0.36 deleterious(0.01) possibly_damaging(0.743) TCGA-4Z-AA7M-01 19 11019874 11019874 C G CARM1 Missense_Mutation p.F183L 0.47 deleterious(0) probably_damaging(0.939) TCGA-4Z-AA7M-01 19 11348927 11348927 G A DOCK6 Missense_Mutation p.S566F 0.40 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7M-01 19 11486494 11486494 C T SWSAP1 Silent p.A164A 0.15 TCGA-4Z-AA7M-01 19 1250394 1250394 C T MIDN Silent p.L33L 0.31 TCGA-4Z-AA7M-01 19 13616823 13616823 G C CACNA1A Silent p.L72L 0.21 TCGA-4Z-AA7M-01 19 13988525 13988525 G A NANOS3 Missense_Mutation p.D155N 0.40 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-4Z-AA7M-01 19 14066959 14066959 C T DCAF15 Silent p.L166L 0.39 TCGA-4Z-AA7M-01 19 15342609 15342609 G T EPHX3 Missense_Mutation p.L103M 0.43 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7M-01 19 15533949 15533949 C T WIZ Missense_Mutation p.D775N 0.26 deleterious(0.02) unknown(0) TCGA-4Z-AA7M-01 19 15535113 15535113 C T WIZ Silent p.Q702Q 0.23 TCGA-4Z-AA7M-01 19 15535124 15535124 C T WIZ Missense_Mutation p.D699N 0.30 deleterious(0.02) benign(0.341) TCGA-4Z-AA7M-01 19 15535434 15535434 C G WIZ Missense_Mutation p.Q673H 0.56 tolerated(0.3) possibly_damaging(0.847) TCGA-4Z-AA7M-01 19 15535458 15535458 C T WIZ Silent p.V665V 0.61 TCGA-4Z-AA7M-01 19 15535493 15535493 C T WIZ Missense_Mutation p.E654K 0.58 tolerated(0.15) benign(0.024) TCGA-4Z-AA7M-01 19 15535532 15535532 C A WIZ Nonsense_Mutation p.E641* 0.42 TCGA-4Z-AA7M-01 19 15536413 15536413 C G WIZ Missense_Mutation p.K416N 0.53 deleterious(0.02) probably_damaging(0.996) TCGA-4Z-AA7M-01 19 15536424 15536424 C T WIZ Missense_Mutation p.E413K 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-4Z-AA7M-01 19 15536436 15536436 C T WIZ Missense_Mutation p.D409N 0.37 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 19 15537870 15537870 C A WIZ Missense_Mutation p.G335V 0.30 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA7M-01 19 15537910 15537910 C T WIZ Missense_Mutation p.E322K 0.33 deleterious(0) probably_damaging(0.928) TCGA-4Z-AA7M-01 19 16910736 16910736 C T NWD1 Silent p.L1167L 0.15 TCGA-4Z-AA7M-01 19 17007033 17007033 C G CPAMD8 Missense_Mutation p.E1841Q 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.844) TCGA-4Z-AA7M-01 19 18707475 18707475 C G CRLF1 Missense_Mutation p.W327C 0.23 deleterious(0) probably_damaging(0.969) TCGA-4Z-AA7M-01 19 18707699 18707699 C T CRLF1 Intron 0.46 TCGA-4Z-AA7M-01 19 18707818 18707818 C T CRLF1 Missense_Mutation p.G247R 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-4Z-AA7M-01 19 20044542 20044542 G A ZNF93 Missense_Mutation p.E260K 0.32 tolerated(0.15) possibly_damaging(0.627) TCGA-4Z-AA7M-01 19 20807108 20807108 T C ZNF626 Silent p.L525L 0.08 TCGA-4Z-AA7M-01 19 22255685 22255685 G A ZNF257 Silent p.Q26Q 0.35 TCGA-4Z-AA7M-01 19 2246928 2246928 C T SF3A2 Silent p.F151F 0.23 TCGA-4Z-AA7M-01 19 2917103 2917103 C T ZNF57 Missense_Mutation p.H162Y 0.42 deleterious(0.05) benign(0.018) TCGA-4Z-AA7M-01 19 30199165 30199165 G A C19orf12 Silent p.A63A 0.14 TCGA-4Z-AA7M-01 19 3118955 3118955 G C GNA11 Silent p.R213R 0.34 TCGA-4Z-AA7M-01 19 36322260 36322260 G T NPHS1 Silent p.R1109R 0.12 TCGA-4Z-AA7M-01 19 39037100 39037100 G C RYR1 Missense_Mutation p.E4010Q 0.27 benign(0) TCGA-4Z-AA7M-01 19 40408701 40408701 C A FCGBP Nonsense_Mutation p.G1380* 0.19 TCGA-4Z-AA7M-01 19 41078260 41078260 G A SPTBN4 Missense_Mutation p.E2504K 0.30 deleterious(0.01) possibly_damaging(0.621) TCGA-4Z-AA7M-01 19 41292604 41292604 C T RAB4B Silent p.G155G 0.14 TCGA-4Z-AA7M-01 19 42265240 42265240 G A CEACAM6 Missense_Mutation p.E170K 0.15 tolerated(0.16) possibly_damaging(0.618) TCGA-4Z-AA7M-01 19 42828899 42828899 G A TMEM145 Missense_Mutation p.R471Q 0.27 tolerated_low_confidence(0.19) benign(0.008) TCGA-4Z-AA7M-01 19 42841280 42841280 G C MEGF8 Missense_Mutation p.D479H 0.31 deleterious(0.03) benign(0.063) TCGA-4Z-AA7M-01 19 4333775 4333775 G C STAP2 Silent p.L71L 0.37 TCGA-4Z-AA7M-01 19 43441169 43441169 G A PSG7 Silent p.L20L 0.34 TCGA-4Z-AA7M-01 19 43866374 43866374 G A CD177 3'UTR 0.12 TCGA-4Z-AA7M-01 19 44831938 44831938 C G ZNF112 Missense_Mutation p.R797T 0.37 deleterious(0) probably_damaging(0.983) TCGA-4Z-AA7M-01 19 44933651 44933651 G A ZNF229 Silent p.C435C 0.06 TCGA-4Z-AA7M-01 19 45157177 45157177 G C PVR Missense_Mutation p.E245Q 0.32 tolerated(0.1) possibly_damaging(0.533) TCGA-4Z-AA7M-01 19 46543577 46543577 C G IGFL4 Missense_Mutation p.L56F 0.44 tolerated(0.05) probably_damaging(0.998) TCGA-4Z-AA7M-01 19 46627883 46627883 C T IGFL3 Silent p.L8L 0.27 TCGA-4Z-AA7M-01 19 46834524 46834524 C G HIF3A Silent p.L608L 0.21 TCGA-4Z-AA7M-01 19 48917338 48917338 C T GRIN2D Silent p.L392L 0.31 TCGA-4Z-AA7M-01 19 49377935 49377935 G C PPP1R15A Missense_Mutation p.W482S 0.20 deleterious(0.02) probably_damaging(0.954) TCGA-4Z-AA7M-01 19 49404145 49404145 G A NUCB1 Missense_Mutation p.R31Q 0.23 tolerated(0.32) benign(0.187) TCGA-4Z-AA7M-01 19 50764749 50764749 G A MYH14 Silent p.L814L 0.14 TCGA-4Z-AA7M-01 19 52002970 52002970 G T SIGLEC12 Missense_Mutation p.A270D 0.38 tolerated(0.12) benign(0.376) TCGA-4Z-AA7M-01 19 54242621 54242621 C G MIR518A2 RNA 0.21 TCGA-4Z-AA7M-01 19 54545204 54545204 G A VSTM1 Silent p.T173T 0.13 TCGA-4Z-AA7M-01 19 54726271 54726271 C - LILRB3 Frame_Shift_Del p.N79Tfs*10 0.11 TCGA-4Z-AA7M-01 19 5668276 5668276 G A SAFB Missense_Mutation p.D910N 0.33 tolerated_low_confidence(0.21) unknown(0) TCGA-4Z-AA7M-01 19 57869066 57869066 C G ZNF304 Missense_Mutation p.T610S 0.33 tolerated(0.1) probably_damaging(0.992) TCGA-4Z-AA7M-01 19 59025453 59025453 C G ZBTB45 Missense_Mutation p.E502Q 0.44 deleterious(0.01) benign(0.305) TCGA-4Z-AA7M-01 19 6734200 6734200 C T GPR108 Missense_Mutation p.D165N 0.43 tolerated(0.17) benign(0.002) TCGA-4Z-AA7M-01 19 6734291 6734291 C G GPR108 Missense_Mutation p.Q134H 0.47 tolerated(0.1) benign(0.009) TCGA-4Z-AA7M-01 1 100533575 100533575 A G HIAT1 Missense_Mutation p.I177V 0.20 tolerated(0.11) probably_damaging(0.956) TCGA-4Z-AA7M-01 1 103347297 103347297 C T COL11A1 Missense_Mutation p.E1666K 0.28 unknown(0) TCGA-4Z-AA7M-01 1 10364096 10364096 C G KIF1B Intron 0.51 TCGA-4Z-AA7M-01 1 10364665 10364665 C T KIF1B Intron 0.44 TCGA-4Z-AA7M-01 1 112309421 112309421 C T DDX20 Missense_Mutation p.S792F 0.43 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 1 115153736 115153736 C T DENND2C Missense_Mutation p.E443K 0.30 deleterious(0.01) benign(0.027) TCGA-4Z-AA7M-01 1 115279464 115279464 G C CSDE1 Missense_Mutation p.L185V 0.47 deleterious(0) benign(0.396) TCGA-4Z-AA7M-01 1 117122246 117122246 C T IGSF3 Silent p.L1054L 0.17 TCGA-4Z-AA7M-01 1 117122287 117122287 C T IGSF3 Missense_Mutation p.D1041N 0.27 deleterious_low_confidence(0.02) benign(0.005) TCGA-4Z-AA7M-01 1 1268433 1268433 G A TAS1R3 Missense_Mutation p.D470N 0.21 tolerated(0.21) benign(0.001) TCGA-4Z-AA7M-01 1 12854425 12854425 T C PRAMEF1 Missense_Mutation p.W217R 0.21 tolerated(0.13) possibly_damaging(0.748) TCGA-4Z-AA7M-01 1 1337537 1337537 C T MRPL20 Missense_Mutation p.E126K 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA7M-01 1 1342310 1342310 C T MRPL20 Silent p.L59L 0.37 TCGA-4Z-AA7M-01 1 145281506 145281506 G C NOTCH2NL Missense_Mutation p.E146Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 1 149915673 149915673 C T OTUD7B 3'UTR 0.23 TCGA-4Z-AA7M-01 1 149916353 149916353 C G OTUD7B Missense_Mutation p.Q645H 0.36 deleterious(0) probably_damaging(0.923) TCGA-4Z-AA7M-01 1 150526378 150526378 C G ADAMTSL4 Missense_Mutation p.S304W 0.22 deleterious(0.04) possibly_damaging(0.825) TCGA-4Z-AA7M-01 1 151134398 151134398 G C LYSMD1 Nonsense_Mutation p.S120* 0.34 TCGA-4Z-AA7M-01 1 152193663 152193663 G C HRNR Missense_Mutation p.L148V 0.33 benign(0.014) TCGA-4Z-AA7M-01 1 152326408 152326408 G C FLG2 Nonsense_Mutation p.S1285* 0.14 TCGA-4Z-AA7M-01 1 153655903 153655903 C A NPR1 Missense_Mutation p.R439S 0.41 tolerated(0.25) benign(0.005) TCGA-4Z-AA7M-01 1 154543710 154543710 C G CHRNB2 Silent p.V137V 0.41 TCGA-4Z-AA7M-01 1 154961425 154961425 G A FLAD1 Intron 0.69 TCGA-4Z-AA7M-01 1 155582033 155582033 G C MSTO1 Missense_Mutation p.E247Q 0.10 tolerated(0.06) probably_damaging(0.951) TCGA-4Z-AA7M-01 1 155658062 155658062 C T YY1AP1 Missense_Mutation p.G65E 0.56 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA7M-01 1 156828332 156828332 C T INSRR Missense_Mutation p.E28K 0.24 tolerated(0.22) benign(0.003) TCGA-4Z-AA7M-01 1 157490994 157490994 C T FCRL5 Silent p.L776L 0.43 TCGA-4Z-AA7M-01 1 158576655 158576655 C T OR10Z1 Nonsense_Mutation p.Q143* 0.41 TCGA-4Z-AA7M-01 1 159283974 159283974 A G OR10J3 Missense_Mutation p.V159A 0.44 deleterious(0.04) benign(0.081) TCGA-4Z-AA7M-01 1 159284040 159284040 A G OR10J3 Missense_Mutation p.M137T 0.11 deleterious(0.01) benign(0.285) TCGA-4Z-AA7M-01 1 15987793 15987793 C A RSC1A1 Nonsense_Mutation p.S477* 0.23 TCGA-4Z-AA7M-01 1 161092290 161092290 C T DEDD Missense_Mutation p.E202K 0.37 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7M-01 1 161654607 161654607 G A RPL31P11 RNA 0.45 TCGA-4Z-AA7M-01 1 16259748 16259748 C T SPEN Missense_Mutation p.S2338L 0.56 benign(0.11) TCGA-4Z-AA7M-01 1 16268728 16268728 G C ZBTB17 Silent p.L716L 0.17 TCGA-4Z-AA7M-01 1 16632350 16632350 C T FBXO42 Silent p.E105E 0.16 TCGA-4Z-AA7M-01 1 169435065 169435065 G A SLC19A2 3'UTR 0.30 TCGA-4Z-AA7M-01 1 169930205 169930205 C G KIFAP3 Missense_Mutation p.D719H 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-4Z-AA7M-01 1 175066594 175066594 G C TNN Missense_Mutation p.E544Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7M-01 1 181702026 181702026 C A CACNA1E Nonsense_Mutation p.S935* 0.26 TCGA-4Z-AA7M-01 1 182554682 182554682 G C RNASEL Missense_Mutation p.F420L 0.44 tolerated(0.76) benign(0.057) TCGA-4Z-AA7M-01 1 183599721 183599721 C G ARPC5 Missense_Mutation p.D93H 0.48 deleterious(0) probably_damaging(0.979) TCGA-4Z-AA7M-01 1 186024579 186024579 G C HMCN1 Missense_Mutation p.R2306P 0.26 possibly_damaging(0.844) TCGA-4Z-AA7M-01 1 186340104 186340104 G C TPR Missense_Mutation p.Q110E 0.48 benign(0.042) TCGA-4Z-AA7M-01 1 197073959 197073959 C T ASPM Nonsense_Mutation p.W1474* 0.57 TCGA-4Z-AA7M-01 1 198701485 198701485 C T PTPRC Silent p.N677N 0.23 TCGA-4Z-AA7M-01 1 205589524 205589524 G C ELK4 Missense_Mutation p.S217C 0.34 deleterious(0.01) possibly_damaging(0.778) TCGA-4Z-AA7M-01 1 212115287 212115287 C A INTS7 Missense_Mutation p.R923I 0.20 deleterious(0) possibly_damaging(0.516) TCGA-4Z-AA7M-01 1 212558702 212558702 G A TMEM206 Missense_Mutation p.P198S 0.42 deleterious(0.04) probably_damaging(0.933) TCGA-4Z-AA7M-01 1 213032309 213032309 G A FLVCR1 Missense_Mutation p.G172D 0.55 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7M-01 1 222717307 222717307 A G HHIPL2 Silent p.P182P 0.19 TCGA-4Z-AA7M-01 1 223981107 223981107 C T TP53BP2 Silent p.E920E 0.14 TCGA-4Z-AA7M-01 1 231557588 231557588 C T EGLN1 Missense_Mutation p.R16Q 0.75 deleterious_low_confidence(0.01) benign(0.238) TCGA-4Z-AA7M-01 1 23688504 23688504 C G ZNF436 Missense_Mutation p.R457S 0.15 tolerated(0.48) benign(0.015) TCGA-4Z-AA7M-01 1 243327864 243327864 G C CEP170 Missense_Mutation p.S1133C 0.55 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 1 247587253 247587253 C T NLRP3 Nonsense_Mutation p.R170* 0.56 TCGA-4Z-AA7M-01 1 247614864 247614864 G C OR2B11 Missense_Mutation p.H141D 0.73 tolerated(0.08) benign(0.026) TCGA-4Z-AA7M-01 1 2530090 2530090 C T MMEL1 Intron 0.23 TCGA-4Z-AA7M-01 1 27657274 27657274 C T TMEM222 Silent p.F86F 0.37 TCGA-4Z-AA7M-01 1 31907096 31907096 C G SERINC2 3'UTR 0.17 TCGA-4Z-AA7M-01 1 37337853 37337853 C T GRIK3 Missense_Mutation p.R223Q 0.19 tolerated(0.32) benign(0.189) TCGA-4Z-AA7M-01 1 40038244 40038244 C T PABPC4 Missense_Mutation p.D70N 0.21 tolerated(0.06) possibly_damaging(0.706) TCGA-4Z-AA7M-01 1 47407066 47407066 C T CYP4A11 Missense_Mutation p.D14N 0.44 tolerated(0.36) benign(0.001) TCGA-4Z-AA7M-01 1 53255712 53255712 G A ZYG11B Missense_Mutation p.R436Q 0.44 deleterious(0.02) benign(0.107) TCGA-4Z-AA7M-01 1 6387467 6387467 G A ACOT7 Missense_Mutation p.R183W 0.36 deleterious(0.04) benign(0.014) TCGA-4Z-AA7M-01 1 65849979 65849979 C A DNAJC6 Missense_Mutation p.P257Q 0.11 tolerated(0.06) possibly_damaging(0.813) TCGA-4Z-AA7M-01 1 75055630 75055630 G A C1orf173 Nonsense_Mutation p.Q621* 0.42 TCGA-4Z-AA7M-01 1 79101035 79101035 C T IFI44L Missense_Mutation p.S246F 0.30 deleterious(0.04) probably_damaging(0.984) TCGA-4Z-AA7M-01 1 86920977 86920977 C T CLCA2 Nonsense_Mutation p.R867* 0.24 TCGA-4Z-AA7M-01 1 89271669 89271669 C G PKN2 Missense_Mutation p.S591C 0.31 deleterious(0.02) benign(0.345) TCGA-4Z-AA7M-01 1 89448906 89448906 G C RBMXL1 Missense_Mutation p.R202G 0.20 tolerated(0.08) benign(0.089) TCGA-4Z-AA7M-01 1 93720145 93720145 C G CCDC18 Missense_Mutation p.Q1159E 0.22 tolerated(0.09) possibly_damaging(0.516) TCGA-4Z-AA7M-01 20 23066321 23066321 G A CD93 Missense_Mutation p.S170F 0.24 tolerated(0.14) benign(0.022) TCGA-4Z-AA7M-01 20 25261745 25261745 C A PYGB Nonsense_Mutation p.S467* 0.22 TCGA-4Z-AA7M-01 20 30729449 30729449 G A TM9SF4 Missense_Mutation p.E127K 0.14 deleterious(0.04) benign(0.188) TCGA-4Z-AA7M-01 20 30730905 30730905 G A TM9SF4 Missense_Mutation p.E217K 0.18 tolerated(0.22) benign(0.01) TCGA-4Z-AA7M-01 20 30915413 30915413 G C KIF3B Missense_Mutation p.L639F 0.19 deleterious(0.01) benign(0.056) TCGA-4Z-AA7M-01 20 30919111 30919111 G C KIF3B Missense_Mutation p.V745L 0.44 deleterious(0.01) benign(0.097) TCGA-4Z-AA7M-01 20 31019450 31019450 C T ASXL1 Missense_Mutation p.A316V 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-4Z-AA7M-01 20 31021233 31021233 G T ASXL1 Missense_Mutation p.R411L 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA7M-01 20 32000148 32000148 C T SNTA1 Missense_Mutation p.E332K 0.59 deleterious(0) possibly_damaging(0.453) TCGA-4Z-AA7M-01 20 33338261 33338261 C T NCOA6 Missense_Mutation p.M579I 0.35 benign(0.039) TCGA-4Z-AA7M-01 20 33609026 33609026 G C TRPC4AP Silent p.L395L 0.10 TCGA-4Z-AA7M-01 20 34458963 34458963 C T PHF20 Missense_Mutation p.H337Y 0.12 tolerated(0.11) benign(0.04) TCGA-4Z-AA7M-01 20 3736237 3736237 G A C20orf27 Silent p.I85I 0.33 TCGA-4Z-AA7M-01 20 40735497 40735497 C T PTPRT Missense_Mutation p.E1107K 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-4Z-AA7M-01 20 408112 408112 C T RBCK1 Silent p.F395F 0.27 TCGA-4Z-AA7M-01 20 46279947 46279947 C T NCOA3 Silent p.S1291S 0.30 TCGA-4Z-AA7M-01 20 48522903 48522903 C G SPATA2 Missense_Mutation p.L272F 0.32 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 20 58318241 58318241 C T PHACTR3 Silent p.S66S 0.13 TCGA-4Z-AA7M-01 20 58545232 58545232 C T CDH26 Silent p.L74L 0.29 TCGA-4Z-AA7M-01 20 61880215 61880215 C T NKAIN4 Nonsense_Mutation p.W75* 0.17 TCGA-4Z-AA7M-01 20 62178657 62178657 G A SRMS Nonsense_Mutation p.Q54* 0.30 TCGA-4Z-AA7M-01 21 10862636 10862636 G C IGHV1OR21-1 Missense_Mutation p.W5C 0.18 tolerated(0.1) possibly_damaging(0.751) TCGA-4Z-AA7M-01 21 19642312 19642312 C T TMPRSS15 Missense_Mutation p.E1012K 0.11 tolerated(0.08) benign(0.009) TCGA-4Z-AA7M-01 21 34927065 34927065 C G SON Missense_Mutation p.S1843C 0.31 unknown(0) TCGA-4Z-AA7M-01 21 35821726 35821726 C T KCNE1 Silent p.K69K 0.37 TCGA-4Z-AA7M-01 21 45655272 45655272 G A ICOSLG Missense_Mutation p.R194W 0.50 deleterious(0.04) benign(0.091) TCGA-4Z-AA7M-01 21 45725780 45725780 C G PFKL Intron 0.38 TCGA-4Z-AA7M-01 21 47695150 47695150 C T MCM3AP Missense_Mutation p.E650K 0.12 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7M-01 22 19119600 19119600 G A TSSK2 Missense_Mutation p.E230K 0.28 tolerated(0.09) benign(0.055) TCGA-4Z-AA7M-01 22 24085890 24085890 C T ZNF70 3'UTR 0.34 TCGA-4Z-AA7M-01 22 31003255 31003255 C G TCN2 5'UTR 0.36 TCGA-4Z-AA7M-01 22 35783041 35783041 C T HMOX1 Missense_Mutation p.P170S 0.13 tolerated(0.07) probably_damaging(0.979) TCGA-4Z-AA7M-01 22 38038560 38038560 C T SH3BP1 Silent p.L74L 0.28 TCGA-4Z-AA7M-01 22 38154096 38154096 G A TRIOBP Missense_Mutation p.G2055E 0.19 deleterious(0.02) possibly_damaging(0.663) TCGA-4Z-AA7M-01 22 38251592 38251592 G C EIF3L Missense_Mutation p.R105T 0.18 tolerated(0.07) benign(0.027) TCGA-4Z-AA7M-01 22 41657564 41657564 G A RANGAP1 Silent p.T167T 0.17 TCGA-4Z-AA7M-01 22 43447809 43447809 C G TTLL1 Missense_Mutation p.E326Q 0.20 deleterious(0.02) probably_damaging(1) TCGA-4Z-AA7M-01 22 43557148 43557148 G T TSPO Silent p.L91L 0.15 TCGA-4Z-AA7M-01 22 50892960 50892960 G C SBF1 Missense_Mutation p.A1675G 0.38 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 22 50956082 50956082 G T NCAPH2 Nonsense_Mutation p.E115* 0.19 TCGA-4Z-AA7M-01 22 51010513 51010513 C T CPT1B Silent p.T499T 0.26 TCGA-4Z-AA7M-01 22 51143229 51143229 C T SHANK3 Missense_Mutation p.S628L 0.24 probably_damaging(0.999) TCGA-4Z-AA7M-01 2 109092074 109092074 G C GCC2 Missense_Mutation p.D982H 0.35 deleterious(0) possibly_damaging(0.879) TCGA-4Z-AA7M-01 2 109092219 109092219 G T GCC2 Silent p.V991V 0.37 TCGA-4Z-AA7M-01 2 109109090 109109090 C T GCC2 Nonsense_Mutation p.Q1431* 0.12 TCGA-4Z-AA7M-01 2 11053024 11053024 G A KCNF1 Missense_Mutation p.E158K 0.19 tolerated(0.6) benign(0.036) TCGA-4Z-AA7M-01 2 113088891 113088891 C T ZC3H6 Missense_Mutation p.S799F 0.48 deleterious(0.01) possibly_damaging(0.878) TCGA-4Z-AA7M-01 2 113414753 113414753 G A SLC20A1 Missense_Mutation p.C238Y 0.46 tolerated(0.92) benign(0.222) TCGA-4Z-AA7M-01 2 116503747 116503747 G T DPP10 Missense_Mutation p.S317I 0.49 deleterious(0.04) benign(0.026) TCGA-4Z-AA7M-01 2 119750016 119750016 G A MARCO Missense_Mutation p.G406R 0.37 deleterious(0) unknown(0) TCGA-4Z-AA7M-01 2 120725515 120725515 G A PTPN4 Missense_Mutation p.M887I 0.46 deleterious(0.01) benign(0.114) TCGA-4Z-AA7M-01 2 132258950 132258950 A G AC093838.4 RNA 0.64 TCGA-4Z-AA7M-01 2 138724664 138724664 T C HNMT Intron 0.46 TCGA-4Z-AA7M-01 2 141215130 141215130 C G LRP1B Missense_Mutation p.R3239P 0.21 possibly_damaging(0.453) TCGA-4Z-AA7M-01 2 166805861 166805861 G A TTC21B Intron 0.55 TCGA-4Z-AA7M-01 2 167163052 167163052 C T SCN9A Missense_Mutation p.M145I 0.54 tolerated(0.11) benign(0.002) TCGA-4Z-AA7M-01 2 168110619 168110619 C T XIRP2 Nonsense_Mutation p.Q3545* 0.27 TCGA-4Z-AA7M-01 2 180815373 180815373 G A CWC22 Missense_Mutation p.S669F 0.59 deleterious(0.02) possibly_damaging(0.486) TCGA-4Z-AA7M-01 2 18113862 18113862 C G KCNS3 3'UTR 0.37 TCGA-4Z-AA7M-01 2 185802704 185802704 G A ZNF804A Missense_Mutation p.E861K 0.54 tolerated(0.54) benign(0.135) TCGA-4Z-AA7M-01 2 18765807 18765807 C T NT5C1B Silent p.K292K 0.50 TCGA-4Z-AA7M-01 2 188248011 188248011 C T CALCRL Missense_Mutation p.E25K 0.58 tolerated(0.37) benign(0.002) TCGA-4Z-AA7M-01 2 191934458 191934458 C G STAT4 Missense_Mutation p.D169H 0.43 deleterious(0) probably_damaging(0.968) TCGA-4Z-AA7M-01 2 198324752 198324752 C T COQ10B Silent p.I67I 0.62 TCGA-4Z-AA7M-01 2 201722761 201722761 A G CLK1 Silent p.C242C 0.30 TCGA-4Z-AA7M-01 2 207656536 207656536 C G FASTKD2 3'UTR 0.44 TCGA-4Z-AA7M-01 2 218696221 218696221 C T TNS1 Silent p.L985L 0.47 TCGA-4Z-AA7M-01 2 234465604 234465604 G C USP40 Missense_Mutation p.S160C 0.61 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 2 25042793 25042793 G C ADCY3 3'UTR 0.27 TCGA-4Z-AA7M-01 2 26667166 26667166 C G DRC1 Missense_Mutation p.L369V 0.16 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7M-01 2 27360907 27360907 G C C2orf53 Missense_Mutation p.F97L 0.15 tolerated(0.07) benign(0.03) TCGA-4Z-AA7M-01 2 27361230 27361230 G C C2orf53 5'UTR 0.26 TCGA-4Z-AA7M-01 2 32339806 32339806 C T SPAST Missense_Mutation p.S261L 0.44 tolerated(0.05) possibly_damaging(0.584) TCGA-4Z-AA7M-01 2 32339880 32339880 C T SPAST Missense_Mutation p.P286S 0.40 tolerated(0.23) benign(0.003) TCGA-4Z-AA7M-01 2 36994366 36994366 C T VIT Missense_Mutation p.S206F 0.50 tolerated_low_confidence(0.07) benign(0.008) TCGA-4Z-AA7M-01 2 40656608 40656608 C G SLC8A1 Missense_Mutation p.Q271H 0.20 tolerated(0.65) benign(0.008) TCGA-4Z-AA7M-01 2 54161845 54161845 C T PSME4 Missense_Mutation p.R285K 0.35 deleterious(0.01) possibly_damaging(0.78) TCGA-4Z-AA7M-01 2 55402958 55402958 C T CLHC1 Missense_Mutation p.A577T 0.39 tolerated(0.84) benign(0.001) TCGA-4Z-AA7M-01 2 71597037 71597037 G C ZNF638 Missense_Mutation p.E723Q 0.16 deleterious(0) possibly_damaging(0.794) TCGA-4Z-AA7M-01 2 73678073 73678073 C A ALMS1 Silent p.S1472S 0.43 TCGA-4Z-AA7M-01 2 73799944 73799944 C G ALMS1 Nonsense_Mutation p.S3646* 0.38 TCGA-4Z-AA7M-01 2 74686653 74686653 C G WBP1 Intron 0.36 TCGA-4Z-AA7M-01 2 79364427 79364427 A T REG1P RNA 0.30 TCGA-4Z-AA7M-01 2 80835385 80835385 T A CTNNA2 Missense_Mutation p.I791N 0.38 deleterious(0) probably_damaging(0.968) TCGA-4Z-AA7M-01 2 85270781 85270781 G C KCMF1 Missense_Mutation p.R140T 0.52 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7M-01 2 90121708 90121708 C T IGKV1D-17 Silent p.F17F 0.15 TCGA-4Z-AA7M-01 3 100368557 100368557 C T GPR128 Nonsense_Mutation p.Q429* 0.32 TCGA-4Z-AA7M-01 3 100368638 100368638 C G GPR128 Missense_Mutation p.Q456E 0.40 deleterious(0) possibly_damaging(0.848) TCGA-4Z-AA7M-01 3 10157349 10157349 G C BRK1 5'UTR 0.17 TCGA-4Z-AA7M-01 3 113169288 113169288 C G SPICE1 Missense_Mutation p.E740Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 3 113379739 113379739 C T KIAA2018 Missense_Mutation p.E264K 0.34 benign(0.05) TCGA-4Z-AA7M-01 3 115395388 115395388 G - GAP43 Frame_Shift_Del p.A223Lfs*23 0.32 TCGA-4Z-AA7M-01 3 118906762 118906762 C T UPK1B Silent p.F70F 0.32 TCGA-4Z-AA7M-01 3 120315211 120315211 C T NDUFB4 Missense_Mutation p.S2L 0.43 deleterious_low_confidence(0) possibly_damaging(0.656) TCGA-4Z-AA7M-01 3 123688013 123688013 G A ROPN1 Nonsense_Mutation p.Q210* 0.43 TCGA-4Z-AA7M-01 3 124456735 124456735 C T UMPS Missense_Mutation p.H211Y 0.09 tolerated(0.08) benign(0.105) TCGA-4Z-AA7M-01 3 128810173 128810173 G A RAB43 Silent p.L135L 0.44 TCGA-4Z-AA7M-01 3 131217058 131217058 G C MRPL3 Missense_Mutation p.L145V 0.12 tolerated(0.06) probably_damaging(0.977) TCGA-4Z-AA7M-01 3 13429906 13429906 G A NUP210 Missense_Mutation p.S194L 0.26 tolerated(0.46) benign(0.001) TCGA-4Z-AA7M-01 3 151161124 151161124 G A IGSF10 Nonsense_Mutation p.Q1871* 0.24 TCGA-4Z-AA7M-01 3 15613207 15613207 C G HACL1 Missense_Mutation p.E355Q 0.48 tolerated(0.17) benign(0.016) TCGA-4Z-AA7M-01 3 17056199 17056199 G A PLCL2 Splice_Site p.X813_splice 0.48 TCGA-4Z-AA7M-01 3 182681832 182681832 G C DCUN1D1 Missense_Mutation p.Q76E 0.16 tolerated(0.14) benign(0.001) TCGA-4Z-AA7M-01 3 182810311 182810311 G C MCCC1 Silent p.L53L 0.22 TCGA-4Z-AA7M-01 3 192988399 192988399 C G HRASLS Missense_Mutation p.R243G 0.20 deleterious(0.03) probably_damaging(0.985) TCGA-4Z-AA7M-01 3 36779863 36779863 C - DCLK3 Frame_Shift_Del p.R97Gfs*82 0.28 TCGA-4Z-AA7M-01 3 37567549 37567549 G A ITGA9 Missense_Mutation p.V454M 0.51 deleterious(0) probably_damaging(0.97) TCGA-4Z-AA7M-01 3 39104607 39104607 G A WDR48 Missense_Mutation p.D39N 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-4Z-AA7M-01 3 40523396 40523396 G C ZNF619 Missense_Mutation p.E23Q 0.26 deleterious(0.03) possibly_damaging(0.85) TCGA-4Z-AA7M-01 3 42234674 42234674 G C TRAK1 Missense_Mutation p.D293H 0.28 deleterious(0.02) probably_damaging(1) TCGA-4Z-AA7M-01 3 44685282 44685282 G C ZNF197 Missense_Mutation p.R887T 0.36 tolerated(0.26) benign(0.039) TCGA-4Z-AA7M-01 3 48638500 48638500 C T UQCRC1 Missense_Mutation p.E292K 0.33 deleterious(0.02) possibly_damaging(0.547) TCGA-4Z-AA7M-01 3 48895187 48895187 C G SLC25A20 Missense_Mutation p.E288Q 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-4Z-AA7M-01 3 49053199 49053200 CT - WDR6 3'UTR 0.16 TCGA-4Z-AA7M-01 3 49053871 49053871 T G DALRD3 Silent p.P379P 0.21 TCGA-4Z-AA7M-01 3 49083976 49083976 G A QRICH1 Missense_Mutation p.S518F 0.38 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7M-01 3 49139107 49139107 G T QARS Silent p.V245V 0.19 TCGA-4Z-AA7M-01 3 49690244 49690244 G A BSN Silent p.R1085R 0.35 TCGA-4Z-AA7M-01 3 49758502 49758502 C G RNF123 Missense_Mutation p.S1263C 0.32 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7M-01 3 50336726 50336726 C G NAT6 5'UTR 0.26 TCGA-4Z-AA7M-01 3 52088320 52088320 C G DUSP7 Silent p.P196P 0.33 TCGA-4Z-AA7M-01 3 52854782 52854782 C A ITIH4 Missense_Mutation p.D567Y 0.16 deleterious(0) benign(0.396) TCGA-4Z-AA7M-01 3 56627088 56627088 G A CCDC66 Missense_Mutation p.D343N 0.39 tolerated(0.85) benign(0.109) TCGA-4Z-AA7M-01 4 100349145 100349145 T C ADH7 Missense_Mutation p.I137V 0.20 tolerated(0.83) benign(0) TCGA-4Z-AA7M-01 4 103556106 103556106 C A MANBA Nonsense_Mutation p.E752* 0.42 TCGA-4Z-AA7M-01 4 110605751 110605751 C G CCDC109B Missense_Mutation p.I255M 0.15 deleterious(0) possibly_damaging(0.832) TCGA-4Z-AA7M-01 4 120107138 120107138 G C MYOZ2 Missense_Mutation p.G193A 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-4Z-AA7M-01 4 123844362 123844362 C G SPATA5 Missense_Mutation p.S22C 0.18 tolerated_low_confidence(0.07) benign(0.004) TCGA-4Z-AA7M-01 4 128751932 128751932 C G HSPA4L Nonsense_Mutation p.S769* 0.24 TCGA-4Z-AA7M-01 4 128807568 128807568 G A PLK4 Missense_Mutation p.G348E 0.45 tolerated(0.15) probably_damaging(1) TCGA-4Z-AA7M-01 4 1346886 1346886 G C UVSSA Missense_Mutation p.D207H 0.23 deleterious(0) possibly_damaging(0.872) TCGA-4Z-AA7M-01 4 152682084 152682084 G A PET112 Silent p.F17F 0.55 TCGA-4Z-AA7M-01 4 155242291 155242291 T G DCHS2 Missense_Mutation p.K965N 0.21 tolerated(0.11) probably_damaging(0.96) TCGA-4Z-AA7M-01 4 159569649 159569649 A G RXFP1 Splice_Site p.X586_splice 0.23 TCGA-4Z-AA7M-01 4 177713370 177713370 G A VEGFC Silent p.F32F 0.25 TCGA-4Z-AA7M-01 4 178881940 178881940 G T LINC01098 5'UTR 0.18 TCGA-4Z-AA7M-01 4 20541128 20541128 C G SLIT2 Missense_Mutation p.R633G 0.04 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7M-01 4 2940930 2940930 G C NOP14 Nonsense_Mutation p.S820* 0.16 TCGA-4Z-AA7M-01 4 3149776 3149776 G A HTT Missense_Mutation p.E1114K 0.13 benign(0.15) TCGA-4Z-AA7M-01 4 40752914 40752914 C G NSUN7 Missense_Mutation p.I68M 0.29 deleterious(0) possibly_damaging(0.458) TCGA-4Z-AA7M-01 4 47898599 47898620 ATTCAAGTACTTTGTCACAACT - NFXL1 Frame_Shift_Del p.S417Afs*78 0.11 TCGA-4Z-AA7M-01 4 48178119 48178119 G C TEC Missense_Mutation p.Q75E 0.31 tolerated(1) benign(0.243) TCGA-4Z-AA7M-01 4 62845470 62845470 A T LPHN3 Missense_Mutation p.I931F 0.23 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7M-01 4 6325128 6325128 G C PPP2R2C Missense_Mutation p.I415M 0.37 deleterious(0) probably_damaging(0.961) TCGA-4Z-AA7M-01 4 69195767 69195767 C T YTHDC1 Missense_Mutation p.M434I 0.43 deleterious(0.04) benign(0.217) TCGA-4Z-AA7M-01 4 71532258 71532258 G T IGJ 5'UTR 0.56 TCGA-4Z-AA7M-01 4 85611688 85611688 C A WDFY3 Nonsense_Mutation p.E3112* 0.21 TCGA-4Z-AA7M-01 4 89199466 89199466 G A PPM1K Silent p.I90I 0.51 TCGA-4Z-AA7M-01 4 89726162 89726162 C T FAM13A Missense_Mutation p.S350N 0.16 deleterious(0.02) probably_damaging(0.928) TCGA-4Z-AA7M-01 4 90816728 90816728 C T MMRN1 Silent p.F202F 0.18 TCGA-4Z-AA7M-01 5 102360917 102360917 G A PAM Silent p.L856L 0.42 TCGA-4Z-AA7M-01 5 111504515 111504515 G C EPB41L4A Nonsense_Mutation p.S618* 0.56 TCGA-4Z-AA7M-01 5 1293552 1293552 G A TERT Silent p.N483N 0.20 TCGA-4Z-AA7M-01 5 132427025 132427025 G A HSPA4 Missense_Mutation p.E507K 0.24 tolerated(0.12) probably_damaging(0.992) TCGA-4Z-AA7M-01 5 133494205 133494205 C G SKP1 Missense_Mutation p.E133Q 0.22 deleterious(0.04) possibly_damaging(0.548) TCGA-4Z-AA7M-01 5 135276349 135276349 G C FBXL21 RNA 0.30 TCGA-4Z-AA7M-01 5 135286999 135286999 C G LECT2 Missense_Mutation p.A68P 0.19 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 5 135567188 135567188 C T TRPC7 Missense_Mutation p.E632K 0.27 tolerated(0.19) possibly_damaging(0.665) TCGA-4Z-AA7M-01 5 13780976 13780976 G A DNAH5 Silent p.F2971F 0.56 TCGA-4Z-AA7M-01 5 137906739 137906739 C T HSPA9 Missense_Mutation p.R107Q 0.21 deleterious_low_confidence(0.02) benign(0.024) TCGA-4Z-AA7M-01 5 139748223 139748223 C T SLC4A9 Silent p.I826I 0.49 TCGA-4Z-AA7M-01 5 140208823 140208823 G A PCDHA6 Missense_Mutation p.G383R 0.20 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-4Z-AA7M-01 5 140262067 140262067 G T PCDHA13 Missense_Mutation p.G72W 0.26 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-4Z-AA7M-01 5 140347512 140347512 C T PCDHAC2 Silent p.L387L 0.20 TCGA-4Z-AA7M-01 5 140481940 140481940 C T PCDHB3 Silent p.S569S 0.41 TCGA-4Z-AA7M-01 5 140562940 140562940 T C PCDHB16 Missense_Mutation p.L269S 0.51 tolerated_low_confidence(0.05) benign(0.232) TCGA-4Z-AA7M-01 5 140603972 140603972 G A PCDHB14 Missense_Mutation p.G299R 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-4Z-AA7M-01 5 140711554 140711554 G A PCDHGA1 Missense_Mutation p.E435K 0.52 deleterious_low_confidence(0.04) benign(0.201) TCGA-4Z-AA7M-01 5 140811994 140811994 C T PCDHGA12 Silent p.N556N 0.21 TCGA-4Z-AA7M-01 5 14487590 14487590 G A TRIO Missense_Mutation p.E2285K 0.31 benign(0.004) TCGA-4Z-AA7M-01 5 159797634 159797634 A C C1QTNF2 Missense_Mutation p.L4R 0.25 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA7M-01 5 16465581 16465581 G C ZNF622 Missense_Mutation p.S65W 0.40 deleterious(0) possibly_damaging(0.6) TCGA-4Z-AA7M-01 5 169675691 169675691 C T LCP2 3'UTR 0.56 TCGA-4Z-AA7M-01 5 176863145 176863145 G A GRK6 Missense_Mutation p.E377K 0.31 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7M-01 5 177634141 177634141 G A HNRNPAB Missense_Mutation p.R195Q 0.58 tolerated(0.05) possibly_damaging(0.566) TCGA-4Z-AA7M-01 5 179155678 179155678 C T CANX 3'UTR 0.61 TCGA-4Z-AA7M-01 5 195111 195111 C A LRRC14B Silent p.L396L 0.26 TCGA-4Z-AA7M-01 5 2755291 2755291 C T C5orf38 3'UTR 0.46 TCGA-4Z-AA7M-01 5 34823482 34823482 C G RAI14 Nonsense_Mutation p.S515* 0.28 TCGA-4Z-AA7M-01 5 35670235 35670235 C T SPEF2 Missense_Mutation p.S477F 0.17 deleterious(0.01) possibly_damaging(0.726) TCGA-4Z-AA7M-01 5 35759808 35759808 G A SPEF2 Missense_Mutation p.E1203K 0.28 tolerated(0.16) benign(0.359) TCGA-4Z-AA7M-01 5 36123048 36123048 G C LMBRD2 Missense_Mutation p.Q280E 0.42 tolerated(0.2) possibly_damaging(0.654) TCGA-4Z-AA7M-01 5 442943 442943 G C C5orf55 5'UTR 0.21 TCGA-4Z-AA7M-01 5 52382783 52382783 C T ITGA2 Missense_Mutation p.S1087L 0.14 tolerated(0.07) benign(0.019) TCGA-4Z-AA7M-01 5 56178562 56178562 G A MAP3K1 Missense_Mutation p.E1179K 0.20 deleterious(0.01) probably_damaging(0.941) TCGA-4Z-AA7M-01 5 65077246 65077246 G C NLN Missense_Mutation p.E274Q 0.13 tolerated(0.12) benign(0.046) TCGA-4Z-AA7M-01 5 65342323 65342323 C G ERBB2IP Missense_Mutation p.S582C 0.23 deleterious(0.02) benign(0.438) TCGA-4Z-AA7M-01 5 70671818 70671818 T C RP11-136K7.2 Intron 0.19 TCGA-4Z-AA7M-01 5 70838002 70838002 G C BDP1 Missense_Mutation p.E2108Q 0.26 tolerated(0.28) benign(0.163) TCGA-4Z-AA7M-01 5 71403526 71403526 C T MAP1B Silent p.I56I 0.19 TCGA-4Z-AA7M-01 5 71492562 71492562 C A MAP1B Missense_Mutation p.S1127Y 0.37 probably_damaging(0.99) TCGA-4Z-AA7M-01 5 71756945 71756945 G C ZNF366 Missense_Mutation p.Q127E 0.35 deleterious_low_confidence(0.05) benign(0.033) TCGA-4Z-AA7M-01 5 79817869 79817869 C A FAM151B Missense_Mutation p.L195I 0.17 deleterious(0.01) possibly_damaging(0.679) TCGA-4Z-AA7M-01 5 865589 865589 G A BRD9 Missense_Mutation p.R545W 0.46 deleterious(0) probably_damaging(0.959) TCGA-4Z-AA7M-01 5 98229235 98229235 G C CHD1 Missense_Mutation p.L626V 0.42 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 6 107391272 107391272 C G BEND3 Missense_Mutation p.E375Q 0.22 deleterious(0.03) possibly_damaging(0.529) TCGA-4Z-AA7M-01 6 111912473 111912473 G A TRAF3IP2 Missense_Mutation p.H273Y 0.44 tolerated(0.33) benign(0.005) TCGA-4Z-AA7M-01 6 119345335 119345335 C G FAM184A Missense_Mutation p.R268T 0.20 deleterious(0.01) possibly_damaging(0.775) TCGA-4Z-AA7M-01 6 130442070 130442070 G C L3MBTL3 Missense_Mutation p.E645Q 0.11 tolerated(0.4) benign(0.19) TCGA-4Z-AA7M-01 6 138196119 138196119 G C TNFAIP3 Missense_Mutation p.E145Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7M-01 6 143093540 143093540 G A HIVEP2 Missense_Mutation p.S779L 0.17 tolerated(0.87) benign(0) TCGA-4Z-AA7M-01 6 143094449 143094449 G A HIVEP2 Missense_Mutation p.S476L 0.18 deleterious(0.05) benign(0.14) TCGA-4Z-AA7M-01 6 143095204 143095204 G C HIVEP2 Missense_Mutation p.F224L 0.23 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7M-01 6 146126928 146126928 C G FBXO30 Missense_Mutation p.R205T 0.14 tolerated(0.3) benign(0.243) TCGA-4Z-AA7M-01 6 150067551 150067551 C G NUP43 Missense_Mutation p.Q27H 0.28 deleterious(0.01) benign(0.02) TCGA-4Z-AA7M-01 6 151054826 151054826 C G PLEKHG1 Silent p.L3L 0.17 TCGA-4Z-AA7M-01 6 151055181 151055181 C G PLEKHG1 Missense_Mutation p.L122V 0.21 tolerated(0.29) possibly_damaging(0.627) TCGA-4Z-AA7M-01 6 152605289 152605289 G C SYNE1 Missense_Mutation p.L6011V 0.50 benign(0.024) TCGA-4Z-AA7M-01 6 154481089 154481089 C T IPCEF1 Missense_Mutation p.M397I 0.14 tolerated(0.2) benign(0.094) TCGA-4Z-AA7M-01 6 158517289 158517289 G A SYNJ2 Missense_Mutation p.E1462K 0.42 tolerated_low_confidence(0.16) benign(0.005) TCGA-4Z-AA7M-01 6 166845945 166845945 C G RPS6KA2 Missense_Mutation p.E464Q 0.20 deleterious(0.01) possibly_damaging(0.887) TCGA-4Z-AA7M-01 6 167587243 167587244 AT - TCP10L2 Frame_Shift_Del p.L50Tfs*20 0.10 TCGA-4Z-AA7M-01 6 169629702 169629702 C T THBS2 Missense_Mutation p.D742N 0.12 tolerated(0.21) benign(0.172) TCGA-4Z-AA7M-01 6 17781470 17781470 G A KIF13A Silent p.L1203L 0.07 TCGA-4Z-AA7M-01 6 18264695 18264695 G C DEK 5'UTR 0.45 TCGA-4Z-AA7M-01 6 24503625 24503625 C G ALDH5A1 Silent p.L191L 0.50 TCGA-4Z-AA7M-01 6 24601434 24601434 G C KIAA0319 Intron 0.44 TCGA-4Z-AA7M-01 6 27100935 27100935 G C HIST1H2AG Missense_Mutation p.G29R 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-4Z-AA7M-01 6 27775613 27775613 C T HIST1H2BL Silent p.K24K 0.38 TCGA-4Z-AA7M-01 6 27777959 27777959 C T HIST1H3H Silent p.V36V 0.41 TCGA-4Z-AA7M-01 6 29640381 29640381 G T ZFP57 Missense_Mutation p.Q503K 0.18 tolerated(1) benign(0.004) TCGA-4Z-AA7M-01 6 29643821 29643821 C G ZFP57 Missense_Mutation p.E47Q 0.26 deleterious(0.01) probably_damaging(0.933) TCGA-4Z-AA7M-01 6 30138762 30138762 C T TRIM15 Missense_Mutation p.A286V 0.11 tolerated(1) benign(0) TCGA-4Z-AA7M-01 6 30572136 30572136 C T PPP1R10 Missense_Mutation p.E419K 0.46 deleterious(0) probably_damaging(0.956) TCGA-4Z-AA7M-01 6 31627422 31627422 T C C6orf47 Silent p.Q101Q 0.46 TCGA-4Z-AA7M-01 6 33740378 33740378 G A LEMD2 3'UTR 0.22 TCGA-4Z-AA7M-01 6 4058989 4058989 C T PRPF4B Nonsense_Mutation p.Q921* 0.20 TCGA-4Z-AA7M-01 6 41162315 41162315 C G TREML2 Silent p.V211V 0.34 TCGA-4Z-AA7M-01 6 42930943 42930943 C G GNMT Missense_Mutation p.I195M 0.41 deleterious(0.02) possibly_damaging(0.675) TCGA-4Z-AA7M-01 6 43193581 43193581 G A DNPH1 Missense_Mutation p.R139W 0.19 deleterious(0) possibly_damaging(0.751) TCGA-4Z-AA7M-01 6 46656421 46656421 G C TDRD6 Missense_Mutation p.D186H 0.30 tolerated(0.12) benign(0.163) TCGA-4Z-AA7M-01 6 50011374 50011374 C T DEFB112 Missense_Mutation p.E86K 0.47 tolerated(0.47) benign(0.292) TCGA-4Z-AA7M-01 6 50696729 50696729 G C TFAP2D Missense_Mutation p.L253F 0.38 deleterious(0.01) possibly_damaging(0.824) TCGA-4Z-AA7M-01 6 52622770 52622770 C G GSTA2 5'UTR 0.36 TCGA-4Z-AA7M-01 6 57512586 57512586 C T PRIM2 3'UTR 0.10 TCGA-4Z-AA7M-01 6 70852696 70852696 G A COL19A1 Missense_Mutation p.G537E 0.23 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 6 75858195 75858195 G C COL12A1 Missense_Mutation p.S1389C 0.21 possibly_damaging(0.828) TCGA-4Z-AA7M-01 6 87969009 87969009 G C ZNF292 Missense_Mutation p.E1888Q 0.56 tolerated(0.06) benign(0.081) TCGA-4Z-AA7M-01 7 100683479 100683479 A G MUC17 Missense_Mutation p.T2928A 0.25 probably_damaging(0.986) TCGA-4Z-AA7M-01 7 104681451 104681451 G A KMT2E Missense_Mutation p.E18K 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-4Z-AA7M-01 7 107393922 107393922 G A CBLL1 Missense_Mutation p.R83Q 0.38 tolerated(0.21) benign(0.006) TCGA-4Z-AA7M-01 7 117232356 117232356 C T CFTR Missense_Mutation p.S712F 0.25 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7M-01 7 127015006 127015006 T G ZNF800 Missense_Mutation p.E128D 0.54 tolerated(1) benign(0.007) TCGA-4Z-AA7M-01 7 136912680 136912680 G C PTN 3'UTR 0.35 TCGA-4Z-AA7M-01 7 140404733 140404733 G C NDUFB2 Nonstop_Mutation p.*106Sext*76 0.29 TCGA-4Z-AA7M-01 7 140501288 140501288 G C BRAF Missense_Mutation p.Q262E 0.36 deleterious(0) possibly_damaging(0.518) TCGA-4Z-AA7M-01 7 14722443 14722443 G A DGKB Missense_Mutation p.R285C 0.20 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7M-01 7 148892646 148892646 C T ZNF282 5'UTR 0.38 TCGA-4Z-AA7M-01 7 150417212 150417212 G A GIMAP1 Silent p.K40K 0.46 TCGA-4Z-AA7M-01 7 151329227 151329227 G C PRKAG2 Intron 0.65 TCGA-4Z-AA7M-01 7 154672607 154672607 G A DPP6 Silent p.L696L 0.08 TCGA-4Z-AA7M-01 7 23313759 23313759 C G GPNMB Silent p.L545L 0.33 TCGA-4Z-AA7M-01 7 23757123 23757123 C G STK31 Missense_Mutation p.I58M 0.46 tolerated(0.06) benign(0.411) TCGA-4Z-AA7M-01 7 24932045 24932045 G A OSBPL3 Missense_Mutation p.S16L 0.38 tolerated(0.05) probably_damaging(0.997) TCGA-4Z-AA7M-01 7 25163443 25163443 C T CYCS Silent p.L65L 0.10 TCGA-4Z-AA7M-01 7 30395341 30395341 C T ZNRF2 Intron 0.37 TCGA-4Z-AA7M-01 7 31792973 31792973 C T PDE1C 3'UTR 0.15 TCGA-4Z-AA7M-01 7 36447536 36447536 C T ANLN Missense_Mutation p.S356F 0.27 tolerated(0.16) possibly_damaging(0.726) TCGA-4Z-AA7M-01 7 39379531 39379531 C A POU6F2 Missense_Mutation p.Q268K 0.45 tolerated_low_confidence(0.95) unknown(0) TCGA-4Z-AA7M-01 7 45078011 45078011 G C CCM2 Missense_Mutation p.E85Q 0.46 deleterious(0) possibly_damaging(0.897) TCGA-4Z-AA7M-01 7 48311847 48311847 C T ABCA13 Missense_Mutation p.P862S 0.53 benign(0.232) TCGA-4Z-AA7M-01 7 5391485 5391485 G T TNRC18 Missense_Mutation p.S1812Y 0.58 probably_damaging(0.949) TCGA-4Z-AA7M-01 7 64438211 64438211 T C ZNF117 3'UTR 0.17 TCGA-4Z-AA7M-01 7 66770992 66770992 C T STAG3L4 RNA 0.18 TCGA-4Z-AA7M-01 7 69583172 69583172 G A AUTS2 Missense_Mutation p.E193K 0.42 deleterious(0.01) probably_damaging(0.953) TCGA-4Z-AA7M-01 7 75625717 75625717 C G STYXL1 3'UTR 0.24 TCGA-4Z-AA7M-01 7 87074215 87074215 C G ABCB4 Missense_Mutation p.R361T 0.29 deleterious(0.01) probably_damaging(0.917) TCGA-4Z-AA7M-01 7 87465530 87465530 G T SLC25A40 3'UTR 0.45 TCGA-4Z-AA7M-01 7 88966053 88966053 C G ZNF804B Missense_Mutation p.P1253A 0.51 deleterious(0.01) possibly_damaging(0.804) TCGA-4Z-AA7M-01 7 95750650 95750650 G C SLC25A13 Missense_Mutation p.I628M 0.30 tolerated(0.15) benign(0.017) TCGA-4Z-AA7M-01 7 97863068 97863068 G A TECPR1 Missense_Mutation p.S446L 0.49 tolerated(0.29) benign(0.001) TCGA-4Z-AA7M-01 7 99129756 99129756 C A ZKSCAN5 Missense_Mutation p.Q802K 0.23 tolerated(0.53) probably_damaging(0.994) TCGA-4Z-AA7M-01 7 99697218 99697218 C T MCM7 Silent p.E90E 0.34 TCGA-4Z-AA7M-01 8 101020780 101020780 G A RGS22 Silent p.Y728Y 0.79 TCGA-4Z-AA7M-01 8 10468766 10468766 G C RP1L1 Missense_Mutation p.L948V 0.35 possibly_damaging(0.794) TCGA-4Z-AA7M-01 8 10782178 10782178 G A XKR6 Silent p.I309I 0.36 TCGA-4Z-AA7M-01 8 125022909 125022909 C T FER1L6 Silent p.F592F 0.19 TCGA-4Z-AA7M-01 8 126011857 126011857 C G SQLE Nonsense_Mutation p.S71* 0.26 TCGA-4Z-AA7M-01 8 130864509 130864509 C T FAM49B Missense_Mutation p.E178K 0.19 tolerated(0.31) benign(0.091) TCGA-4Z-AA7M-01 8 143957264 143957264 C G CYP11B1 Missense_Mutation p.E329Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 8 1998950 1998950 C G MYOM2 Missense_Mutation p.Q24E 0.25 tolerated(0.61) benign(0.009) TCGA-4Z-AA7M-01 8 21767043 21767043 G A DOK2 Nonsense_Mutation p.R340* 0.41 TCGA-4Z-AA7M-01 8 22102517 22102517 C T POLR3D 5'Flank 0.18 TCGA-4Z-AA7M-01 8 22481852 22481852 G C BIN3 Silent p.L121L 0.23 TCGA-4Z-AA7M-01 8 23117806 23117806 G C CHMP7 Missense_Mutation p.E424Q 0.33 tolerated(0.07) probably_damaging(0.968) TCGA-4Z-AA7M-01 8 2820800 2820800 G T CSMD1 Missense_Mutation p.A3133D 0.22 possibly_damaging(0.837) TCGA-4Z-AA7M-01 8 28827984 28827984 G A HMBOX1 Missense_Mutation p.E150K 0.31 deleterious(0.01) probably_damaging(0.944) TCGA-4Z-AA7M-01 8 30705783 30705783 C T TEX15 Missense_Mutation p.E251K 0.30 tolerated(0.59) benign(0.173) TCGA-4Z-AA7M-01 8 37630357 37630357 C G PROSC Missense_Mutation p.S135C 0.25 tolerated(0.09) benign(0.021) TCGA-4Z-AA7M-01 8 43033261 43033261 C T HGSNAT Missense_Mutation p.S299F 0.22 deleterious(0) probably_damaging(0.981) TCGA-4Z-AA7M-01 8 53852959 53852959 G T NPBWR1 Silent p.G164G 0.19 TCGA-4Z-AA7M-01 8 57129959 57129959 G C CHCHD7 Missense_Mutation p.E100Q 0.18 tolerated(0.3) possibly_damaging(0.643) TCGA-4Z-AA7M-01 8 59410823 59410823 C A CYP7A1 Missense_Mutation p.D96Y 0.18 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 8 59502625 59502625 C T NSMAF Silent p.S707S 0.34 TCGA-4Z-AA7M-01 8 61655654 61655654 C T CHD7 Nonsense_Mutation p.Q555* 0.56 TCGA-4Z-AA7M-01 8 67578333 67578333 C T VCPIP1 Silent p.L287L 0.07 TCGA-4Z-AA7M-01 8 68346349 68346349 G A CPA6 Missense_Mutation p.S322F 0.70 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 8 70551080 70551080 G C SULF1 Missense_Mutation p.K846N 0.06 deleterious_low_confidence(0.01) benign(0.052) TCGA-4Z-AA7M-01 8 87414422 87414422 C T WWP1 Silent p.A238A 0.43 TCGA-4Z-AA7M-01 8 97156884 97156884 C T GDF6 Silent p.L425L 0.09 TCGA-4Z-AA7M-01 8 97156941 97156941 C T GDF6 Silent p.L406L 0.08 TCGA-4Z-AA7M-01 9 100616622 100616622 C A FOXE1 Missense_Mutation p.F142L 0.33 deleterious(0) probably_damaging(0.977) TCGA-4Z-AA7M-01 9 129154364 129154364 G C MVB12B Missense_Mutation p.K143N 0.58 deleterious(0) probably_damaging(0.914) TCGA-4Z-AA7M-01 9 131862142 131862142 C T CRAT Intron 0.27 TCGA-4Z-AA7M-01 9 133470931 133470931 C G FUBP3 Nonsense_Mutation p.S49* 0.48 TCGA-4Z-AA7M-01 9 139257549 139257549 G C DNLZ Missense_Mutation p.S87C 0.63 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7M-01 9 139925703 139925703 G A FUT7 Missense_Mutation p.S163L 0.60 tolerated(0.28) benign(0.007) TCGA-4Z-AA7M-01 9 139935328 139935328 G A NPDC1 Missense_Mutation p.S165F 0.44 deleterious(0) probably_damaging(0.983) TCGA-4Z-AA7M-01 9 139995590 139995590 C G MAN1B1 Silent p.L350L 0.72 TCGA-4Z-AA7M-01 9 139996074 139996074 C G MAN1B1 Missense_Mutation p.Q402E 0.54 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7M-01 9 139996096 139996096 C G MAN1B1 Missense_Mutation p.S409C 0.42 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 9 19076660 19076660 G C HAUS6 Missense_Mutation p.P412A 0.54 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7M-01 9 2838476 2838476 C T KIAA0020 Missense_Mutation p.G11E 0.32 tolerated_low_confidence(0.08) benign(0.33) TCGA-4Z-AA7M-01 9 33799183 33799183 C T PRSS3 3'UTR 0.10 TCGA-4Z-AA7M-01 9 35674215 35674215 G A CA9 Missense_Mutation p.E87K 0.89 tolerated_low_confidence(0.17) benign(0.292) TCGA-4Z-AA7M-01 9 71842743 71842743 G C TJP2 Missense_Mutation p.D456H 0.45 deleterious(0.01) probably_damaging(0.994) TCGA-4Z-AA7M-01 X 100871614 100871614 C G ARMCX6 5'UTR 0.64 TCGA-4Z-AA7M-01 X 106224118 106224118 T C MORC4 Intron 0.32 TCGA-4Z-AA7M-01 X 128599675 128599675 C T SMARCA1 Missense_Mutation p.R951H 0.33 tolerated(0.08) benign(0.126) TCGA-4Z-AA7M-01 X 153297731 153297731 C T MECP2 Missense_Mutation p.E114K 0.72 tolerated(0.06) possibly_damaging(0.855) TCGA-4Z-AA7M-01 X 153714226 153714226 C T UBL4A Missense_Mutation p.E83K 0.72 tolerated(0.72) benign(0) TCGA-4Z-AA7M-01 X 31089858 31089858 C T FTHL17 Missense_Mutation p.M71I 0.73 tolerated(0.07) benign(0.066) TCGA-4Z-AA7M-01 X 35984703 35984703 C G CXorf22 Missense_Mutation p.P478A 0.55 deleterious(0) probably_damaging(1) TCGA-4Z-AA7M-01 X 54470498 54470498 C G TSR2 Missense_Mutation p.L108V 0.54 tolerated(0.36) benign(0.043) TCGA-4Z-AA7M-01 X 54470515 54470515 C T TSR2 Silent p.S113S 0.61 TCGA-4Z-AA7M-01 X 92927448 92927448 C T NAP1L3 Missense_Mutation p.E286K 0.82 tolerated(0.07) possibly_damaging(0.874) TCGA-4Z-AA7N-01 10 16893359 16893359 C A CUBN Missense_Mutation p.D3180Y 0.09 deleterious(0.04) probably_damaging(0.992) TCGA-4Z-AA7N-01 10 99969182 99969182 C T R3HCC1L Silent p.F437F 0.06 TCGA-4Z-AA7N-01 11 62620850 62620850 C G SLC3A2 5'Flank 0.08 TCGA-4Z-AA7N-01 12 113645935 113645935 G C IQCD Missense_Mutation p.Q13E 0.05 tolerated(0.06) benign(0.209) TCGA-4Z-AA7N-01 12 57589486 57589486 G A LRP1 Missense_Mutation p.R2828H 0.09 benign(0.067) TCGA-4Z-AA7N-01 12 7079822 7079822 C T PHB2 5'UTR 0.27 TCGA-4Z-AA7N-01 12 91449379 91449379 C T KERA Missense_Mutation p.G227E 0.06 tolerated(0.91) benign(0.001) TCGA-4Z-AA7N-01 13 28908175 28908175 C T FLT1 Silent p.V860V 0.06 TCGA-4Z-AA7N-01 15 92973291 92973291 C G ST8SIA2 Silent p.G37G 0.06 TCGA-4Z-AA7N-01 16 3339455 3339455 C T ZNF263 Nonsense_Mutation p.Q317* 0.07 TCGA-4Z-AA7N-01 16 58325002 58325002 C A PRSS54 Missense_Mutation p.D42Y 0.12 deleterious(0.02) benign(0.423) TCGA-4Z-AA7N-01 18 6238036 6238036 G A L3MBTL4 Silent p.C237C 0.07 TCGA-4Z-AA7N-01 19 53391405 53391405 C T ZNF320 Silent p.E39E 0.06 TCGA-4Z-AA7N-01 1 11115109 11115109 C T SRM Silent p.L266L 0.06 TCGA-4Z-AA7N-01 1 17349184 17349184 C T SDHB Silent p.E228E 0.07 TCGA-4Z-AA7N-01 1 223991955 223991955 C T TP53BP2 Silent p.E190E 0.07 TCGA-4Z-AA7N-01 22 22843566 22843566 G A ZNF280B Missense_Mutation p.S53L 0.05 deleterious(0) probably_damaging(0.938) TCGA-4Z-AA7N-01 3 186508014 186508014 G C RFC4 Missense_Mutation p.Q305E 0.06 deleterious(0) possibly_damaging(0.85) TCGA-4Z-AA7N-01 3 196867115 196867115 G A DLG1 Silent p.F236F 0.06 TCGA-4Z-AA7N-01 4 183658121 183658121 G A TENM3 Missense_Mutation p.R1043K 0.05 tolerated(0.3) benign(0.364) TCGA-4Z-AA7N-01 5 76621425 76621425 G C PDE8B Missense_Mutation p.R154T 0.06 deleterious(0) possibly_damaging(0.854) TCGA-4Z-AA7N-01 5 7859577 7859577 G A FASTKD3 Nonsense_Mutation p.Q654* 0.05 TCGA-4Z-AA7N-01 6 142409682 142409682 C T NMBR Silent p.T38T 0.10 TCGA-4Z-AA7N-01 6 51889737 51889737 C T PKHD1 Missense_Mutation p.R1624Q 0.05 tolerated(1) benign(0.001) TCGA-4Z-AA7N-01 9 35735306 35735306 C G CREB3 Silent p.V182V 0.08 TCGA-4Z-AA7O-01 10 135111588 135111588 G A TUBGCP2 Nonsense_Mutation p.R162* 0.33 TCGA-4Z-AA7O-01 10 135213089 135213089 C A MTG1 Silent p.L159L 0.29 TCGA-4Z-AA7O-01 10 25888210 25888210 C T GPR158 3'UTR 0.42 TCGA-4Z-AA7O-01 10 26377139 26377139 A G MYO3A Missense_Mutation p.N456S 0.43 deleterious(0) benign(0.145) TCGA-4Z-AA7O-01 10 43015205 43015205 G A ZNF37BP RNA 0.28 TCGA-4Z-AA7O-01 10 43019103 43019103 C T ZNF37BP RNA 0.45 TCGA-4Z-AA7O-01 10 53458569 53458569 C A CSTF2T Silent p.V247V 0.35 TCGA-4Z-AA7O-01 10 75157959 75157959 C T ANXA7 Missense_Mutation p.G80E 0.39 deleterious(0.02) benign(0.002) TCGA-4Z-AA7O-01 10 75673349 75673349 G C PLAU Missense_Mutation p.K171N 0.39 deleterious(0) possibly_damaging(0.718) TCGA-4Z-AA7O-01 10 76602804 76602804 C T KAT6B Silent p.V63V 0.32 TCGA-4Z-AA7O-01 10 875436 875436 C T LARP4B Silent p.A338A 0.34 TCGA-4Z-AA7O-01 10 95163795 95163795 C G MYOF Silent p.L276L 0.27 TCGA-4Z-AA7O-01 10 97373916 97373916 C T ALDH18A1 Silent p.V536V 0.44 TCGA-4Z-AA7O-01 10 99215380 99215381 - T ZDHHC16 Intron 0.27 TCGA-4Z-AA7O-01 11 108361957 108361957 T C KDELC2 Intron 0.62 TCGA-4Z-AA7O-01 11 113712400 113712400 C - USP28 Frame_Shift_Del p.G120Efs*45 0.41 TCGA-4Z-AA7O-01 11 46403911 46403911 C A MDK Missense_Mutation p.S48R 0.60 deleterious(0.01) probably_damaging(0.966) TCGA-4Z-AA7O-01 11 47772834 47772834 C T FNBP4 Missense_Mutation p.E216K 0.73 deleterious(0.02) possibly_damaging(0.541) TCGA-4Z-AA7O-01 11 55860925 55860925 T G OR8I2 Missense_Mutation p.L48V 0.44 tolerated(0.15) benign(0.067) TCGA-4Z-AA7O-01 11 59224794 59224794 G A OR4D6 Missense_Mutation p.D121N 0.37 deleterious(0.01) possibly_damaging(0.84) TCGA-4Z-AA7O-01 11 6503023 6503023 G T TIMM10B Nonsense_Mutation p.E26* 0.58 TCGA-4Z-AA7O-01 11 65271987 65271987 G C MALAT1 RNA 0.19 TCGA-4Z-AA7O-01 11 67076937 67076937 T G SSH3 Missense_Mutation p.N377K 0.23 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7O-01 11 68675615 68675615 G T IGHMBP2 Missense_Mutation p.D87Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7O-01 11 71183505 71183505 G C NADSYN1 Missense_Mutation p.E140Q 0.49 tolerated(0.17) probably_damaging(0.918) TCGA-4Z-AA7O-01 11 71711585 71711585 G C IL18BP Missense_Mutation p.E73Q 0.61 tolerated(0.07) benign(0.208) TCGA-4Z-AA7O-01 11 71942080 71942080 G C INPPL1 Silent p.S448S 0.14 TCGA-4Z-AA7O-01 11 96117902 96117902 C T CCDC82 Missense_Mutation p.V4I 0.75 tolerated_low_confidence(0.19) benign(0.011) TCGA-4Z-AA7O-01 12 102064141 102064141 A G MYBPC1 Missense_Mutation p.Y849C 0.35 deleterious(0.02) probably_damaging(1) TCGA-4Z-AA7O-01 12 113386987 113386987 C T OAS3 Missense_Mutation p.H451Y 0.46 tolerated(1) benign(0.001) TCGA-4Z-AA7O-01 12 120222805 120222805 T C CIT Missense_Mutation p.K454E 0.35 deleterious(0.01) possibly_damaging(0.908) TCGA-4Z-AA7O-01 12 12037420 12037420 G A ETV6 Missense_Mutation p.D351N 0.39 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 12 121434479 121434479 G A HNF1A Missense_Mutation p.G415R 0.48 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-4Z-AA7O-01 12 122729211 122729211 C A VPS33A Missense_Mutation p.A292S 0.40 tolerated(0.47) benign(0.145) TCGA-4Z-AA7O-01 12 122729212 122729212 A G VPS33A Silent p.S291S 0.39 TCGA-4Z-AA7O-01 12 126138276 126138276 G A TMEM132B Missense_Mutation p.E753K 0.38 deleterious(0) possibly_damaging(0.447) TCGA-4Z-AA7O-01 12 14767865 14767865 C T GUCY2C Missense_Mutation p.E995K 0.35 deleterious(0.04) possibly_damaging(0.9) TCGA-4Z-AA7O-01 12 14792872 14792872 C G GUCY2C Missense_Mutation p.R694T 0.42 deleterious(0.02) possibly_damaging(0.685) TCGA-4Z-AA7O-01 12 45429832 45429832 G T DBX2 Silent p.R157R 0.25 TCGA-4Z-AA7O-01 12 49428629 49428629 G A KMT2D Nonsense_Mutation p.Q3441* 0.41 TCGA-4Z-AA7O-01 12 49444676 49444677 - TGGCATCAGCT KMT2D Frame_Shift_Ins p.M930Ifs*32 0.08 TCGA-4Z-AA7O-01 12 50135934 50135934 T A TMBIM6 Silent p.S5S 0.25 TCGA-4Z-AA7O-01 12 50368123 50368124 - A AQP6 Frame_Shift_Ins p.T141Nfs*174 0.35 TCGA-4Z-AA7O-01 12 56578721 56578721 C T SMARCC2 Splice_Site p.X134_splice 0.16 TCGA-4Z-AA7O-01 12 57873095 57873095 G A ARHGAP9 Missense_Mutation p.A32V 0.49 tolerated(0.1) benign(0.009) TCGA-4Z-AA7O-01 12 6458149 6458149 G A SCNN1A Missense_Mutation p.S566L 0.38 deleterious(0.03) probably_damaging(0.91) TCGA-4Z-AA7O-01 12 76424666 76424666 G A PHLDA1 Missense_Mutation p.R286C 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-4Z-AA7O-01 12 78583761 78583761 C T NAV3 Intron 0.39 TCGA-4Z-AA7O-01 12 8048209 8048209 G A NANOGP1 RNA 0.35 TCGA-4Z-AA7O-01 13 33332272 33332272 A G PDS5B Missense_Mutation p.N1035S 0.52 tolerated(0.39) benign(0.088) TCGA-4Z-AA7O-01 13 99092955 99092955 G A FARP1 Silent p.Q887Q 0.26 TCGA-4Z-AA7O-01 14 105843150 105843150 G A PACS2 Missense_Mutation p.E283K 0.30 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7O-01 14 19553823 19553823 G A POTEG Missense_Mutation p.R136H 0.04 tolerated(0.12) benign(0.003) TCGA-4Z-AA7O-01 14 22580710 22580710 A G TRAV25 Missense_Mutation p.N18S 0.46 tolerated(1) benign(0.012) TCGA-4Z-AA7O-01 14 23870118 23870118 G A MYH6 Missense_Mutation p.R404W 0.37 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7O-01 14 33015058 33015058 C G AKAP6 Missense_Mutation p.T400S 0.38 tolerated(0.45) benign(0.003) TCGA-4Z-AA7O-01 14 33015866 33015866 G A AKAP6 Nonsense_Mutation p.W669* 0.46 TCGA-4Z-AA7O-01 14 61919978 61919978 G A PRKCH Silent p.A289A 0.29 TCGA-4Z-AA7O-01 14 71443718 71443718 C T PCNX Nonsense_Mutation p.Q222* 0.47 TCGA-4Z-AA7O-01 14 73138024 73138024 C T DPF3 Silent p.R298R 0.40 TCGA-4Z-AA7O-01 14 75904735 75904735 G A JDP2 Missense_Mutation p.A49T 0.53 tolerated(0.11) benign(0.008) TCGA-4Z-AA7O-01 15 22473056 22473056 T G IGHV4OR15-8 Missense_Mutation p.Y72S 0.24 tolerated(0.32) benign(0.04) TCGA-4Z-AA7O-01 15 31362231 31362231 C A TRPM1 Intron 0.15 TCGA-4Z-AA7O-01 15 41820133 41820133 C T RPAP1 Silent p.L451L 0.57 TCGA-4Z-AA7O-01 15 43707960 43707960 G A TP53BP1 Missense_Mutation p.P1641S 0.38 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-4Z-AA7O-01 15 63948408 63948408 C T HERC1 Missense_Mutation p.R3250Q 0.52 benign(0.215) TCGA-4Z-AA7O-01 15 65443065 65443065 G A CLPX 3'UTR 0.18 TCGA-4Z-AA7O-01 15 74707003 74707003 G A SEMA7A Silent p.P393P 0.38 TCGA-4Z-AA7O-01 15 75631432 75631432 G A COMMD4 Silent p.L96L 0.46 TCGA-4Z-AA7O-01 15 78526758 78526758 C T ACSBG1 Missense_Mutation p.R29Q 0.38 tolerated_low_confidence(0.7) benign(0.001) TCGA-4Z-AA7O-01 15 89865993 89865993 C A POLG Missense_Mutation p.R802S 0.34 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 16 1613998 1613998 C T IFT140 Silent p.A689A 0.30 TCGA-4Z-AA7O-01 16 29831039 29831039 C A PAGR1 Silent p.S243S 0.06 TCGA-4Z-AA7O-01 16 3454675 3454675 C G ZNF174 Intron 0.40 TCGA-4Z-AA7O-01 16 3582789 3582789 G C CLUAP1 Missense_Mutation p.R347T 0.37 deleterious(0.01) benign(0.131) TCGA-4Z-AA7O-01 16 4016694 4016694 C T ADCY9 Silent p.Q1048Q 0.38 TCGA-4Z-AA7O-01 16 4016706 4016706 C T ADCY9 Silent p.L1044L 0.39 TCGA-4Z-AA7O-01 16 50138886 50138886 C T HEATR3 Nonsense_Mutation p.Q653* 0.40 TCGA-4Z-AA7O-01 16 67005087 67005087 G C CES3 Missense_Mutation p.E386Q 0.36 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7O-01 17 10321966 10321966 C G MYH8 Missense_Mutation p.L169F 0.15 deleterious(0) possibly_damaging(0.826) TCGA-4Z-AA7O-01 17 18918368 18918368 G A SLC5A10 Missense_Mutation p.R382Q 0.44 deleterious(0) probably_damaging(0.918) TCGA-4Z-AA7O-01 17 3181445 3181445 C G OR3A2 Missense_Mutation p.G262A 0.43 deleterious(0.03) possibly_damaging(0.86) TCGA-4Z-AA7O-01 17 34945888 34945888 C T GGNBP2 3'UTR 0.43 TCGA-4Z-AA7O-01 17 42988717 42988717 G A GFAP Silent p.L338L 0.18 TCGA-4Z-AA7O-01 17 46153372 46153372 C G CBX1 Missense_Mutation p.K103N 0.52 deleterious(0.01) possibly_damaging(0.711) TCGA-4Z-AA7O-01 17 4725980 4725980 C G PLD2 Missense_Mutation p.L875V 0.41 deleterious(0.01) benign(0.188) TCGA-4Z-AA7O-01 17 4926875 4926875 C T KIF1C Missense_Mutation p.P914L 0.47 tolerated_low_confidence(0.22) benign(0.003) TCGA-4Z-AA7O-01 17 61949780 61949780 G C CSH2 Intron 0.44 TCGA-4Z-AA7O-01 17 64222145 64222145 C T APOH Splice_Site p.X113_splice 0.50 TCGA-4Z-AA7O-01 17 685426 685426 G A GLOD4 Missense_Mutation p.R24W 0.34 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7O-01 17 80401823 80401823 C A C17orf62 3'UTR 0.35 TCGA-4Z-AA7O-01 17 8700817 8700817 A T MFSD6L Missense_Mutation p.I541K 0.39 deleterious(0) possibly_damaging(0.635) TCGA-4Z-AA7O-01 18 11893482 11893482 C A MPPE1 Missense_Mutation p.K125N 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-4Z-AA7O-01 18 13099569 13099569 G A CEP192 Missense_Mutation p.D2218N 0.14 tolerated(1) benign(0.004) TCGA-4Z-AA7O-01 18 43459023 43459023 C T EPG5 Missense_Mutation p.E1942K 0.38 tolerated(0.2) probably_damaging(0.953) TCGA-4Z-AA7O-01 18 73000621 73000621 G A TSHZ1 3'UTR 0.32 TCGA-4Z-AA7O-01 19 1279058 1279058 C T C19orf24 3'UTR 0.34 TCGA-4Z-AA7O-01 19 1990104 1990104 C A BTBD2 Missense_Mutation p.R296L 0.27 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7O-01 19 21991719 21991719 C G ZNF43 Missense_Mutation p.E374Q 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-4Z-AA7O-01 19 34297765 34297765 C T KCTD15 Intron 0.40 TCGA-4Z-AA7O-01 19 38190605 38190605 G C ZNF607 Missense_Mutation p.Q143E 0.41 tolerated(1) benign(0.002) TCGA-4Z-AA7O-01 19 38935264 38935264 C T RYR1 Missense_Mutation p.S193F 0.23 probably_damaging(0.999) TCGA-4Z-AA7O-01 19 41307023 41307023 C T EGLN2 Silent p.I182I 0.36 TCGA-4Z-AA7O-01 19 43016632 43016632 C G CEACAM1 Splice_Site p.X416_splice 0.43 TCGA-4Z-AA7O-01 19 45593842 45593842 A G GEMIN7 3'UTR 0.44 TCGA-4Z-AA7O-01 19 45811670 45811670 C A CKM Missense_Mutation p.Q258H 0.33 deleterious(0.02) benign(0.229) TCGA-4Z-AA7O-01 19 54204530 54204530 C T MIR520B RNA 0.32 TCGA-4Z-AA7O-01 19 7794995 7794995 G C CLEC4G Missense_Mutation p.F179L 0.67 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7O-01 19 7795029 7795029 G A CLEC4G Missense_Mutation p.S168L 0.65 tolerated(0.09) benign(0.043) TCGA-4Z-AA7O-01 19 7927312 7927312 G A EVI5L Silent p.A613A 0.23 TCGA-4Z-AA7O-01 19 7927313 7927313 G C EVI5L Missense_Mutation p.E614Q 0.24 tolerated(0.07) possibly_damaging(0.516) TCGA-4Z-AA7O-01 19 830927 830927 G A AZU1 Missense_Mutation p.G194S 0.50 deleterious(0.03) probably_damaging(0.95) TCGA-4Z-AA7O-01 1 109740184 109740184 A G KIAA1324 Missense_Mutation p.Y737C 0.43 deleterious(0) probably_damaging(0.979) TCGA-4Z-AA7O-01 1 150482789 150482789 C T ECM1 Intron 0.60 TCGA-4Z-AA7O-01 1 154956145 154956145 G C FLAD1 5'UTR 0.20 TCGA-4Z-AA7O-01 1 16577371 16577371 C T FBXO42 Missense_Mutation p.D650N 0.32 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-4Z-AA7O-01 1 172526505 172526505 C G SUCO Missense_Mutation p.L177V 0.55 tolerated(0.11) benign(0.019) TCGA-4Z-AA7O-01 1 175092638 175092638 G A TNN Missense_Mutation p.R918H 0.32 tolerated(0.16) benign(0.159) TCGA-4Z-AA7O-01 1 181689976 181689976 C T CACNA1E Silent p.I647I 0.40 TCGA-4Z-AA7O-01 1 184695503 184695503 G C EDEM3 Missense_Mutation p.I211M 0.23 tolerated(0.87) benign(0.012) TCGA-4Z-AA7O-01 1 186022145 186022145 C T HMCN1 Silent p.L2213L 0.29 TCGA-4Z-AA7O-01 1 186292875 186292875 T C TPR Silent p.P2080P 0.62 TCGA-4Z-AA7O-01 1 190068220 190068220 C A BRINP3 Missense_Mutation p.C410F 0.52 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7O-01 1 19062184 19062184 C A PAX7 Missense_Mutation p.S405Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-4Z-AA7O-01 1 196928202 196928202 G A CFHR2 Missense_Mutation p.E269K 0.16 tolerated_low_confidence(1) benign(0) TCGA-4Z-AA7O-01 1 20066325 20066325 G A TMCO4 Missense_Mutation p.R391W 0.35 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 1 202270046 202270046 G A LGR6 Silent p.T285T 0.10 TCGA-4Z-AA7O-01 1 214171121 214171121 G A PROX1 Missense_Mutation p.V415I 0.42 tolerated(0.06) probably_damaging(0.964) TCGA-4Z-AA7O-01 1 224345127 224345127 C T FBXO28 Silent p.T262T 0.30 TCGA-4Z-AA7O-01 1 228295526 228295526 C T MRPL55 Missense_Mutation p.R60H 0.31 tolerated(0.21) benign(0.068) TCGA-4Z-AA7O-01 1 235505340 235505340 G C GGPS1 Silent p.V52V 0.30 TCGA-4Z-AA7O-01 1 237550662 237550662 G A RYR2 Missense_Mutation p.G220R 0.42 probably_damaging(0.977) TCGA-4Z-AA7O-01 1 248059175 248059175 G A OR2W3 Missense_Mutation p.G96D 0.39 deleterious(0) probably_damaging(0.979) TCGA-4Z-AA7O-01 1 27099397 27099397 C T ARID1A Nonsense_Mutation p.Q1212* 0.56 TCGA-4Z-AA7O-01 1 40363442 40363442 G A MYCL Missense_Mutation p.P263S 0.19 tolerated(0.07) benign(0.005) TCGA-4Z-AA7O-01 1 40737616 40737616 C A ZMPSTE24 Missense_Mutation p.F226L 0.28 deleterious(0.01) benign(0.261) TCGA-4Z-AA7O-01 1 43826470 43826470 G A CDC20 Silent p.L305L 0.37 TCGA-4Z-AA7O-01 1 45671483 45671483 G A ZSWIM5 Silent p.F180F 0.33 TCGA-4Z-AA7O-01 1 46976636 46976636 C T DMBX1 Silent p.F121F 0.35 TCGA-4Z-AA7O-01 1 6202308 6202308 C T CHD5 Silent p.A772A 0.77 TCGA-4Z-AA7O-01 1 65047849 65047849 A G CACHD1 Missense_Mutation p.K40R 0.42 tolerated(0.54) benign(0.165) TCGA-4Z-AA7O-01 1 9714467 9714467 G C C1orf200 Missense_Mutation p.L10V 0.28 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-4Z-AA7O-01 20 13850831 13850831 G A SEL1L2 Missense_Mutation p.H375Y 0.35 tolerated(0.31) benign(0.147) TCGA-4Z-AA7O-01 20 3208485 3208485 C T SLC4A11 Missense_Mutation p.R902Q 0.16 tolerated(0.16) benign(0.053) TCGA-4Z-AA7O-01 20 50158937 50158937 G A NFATC2 Silent p.F34F 0.38 TCGA-4Z-AA7O-01 20 56138777 56138777 G A PCK1 Missense_Mutation p.A319T 0.36 tolerated(0.09) benign(0.002) TCGA-4Z-AA7O-01 20 62642738 62642738 C G PRPF6 Missense_Mutation p.T469R 0.50 deleterious(0) possibly_damaging(0.697) TCGA-4Z-AA7O-01 21 32119279 32119279 G C KRTAP21-2 Missense_Mutation p.S81C 0.40 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA7O-01 21 44270058 44270058 G C WDR4 3'UTR 0.14 TCGA-4Z-AA7O-01 22 21990804 21990804 C A CCDC116 Missense_Mutation p.N429K 0.47 deleterious(0.05) probably_damaging(0.943) TCGA-4Z-AA7O-01 22 24730490 24730490 C G SPECC1L Missense_Mutation p.P837A 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-4Z-AA7O-01 22 30198080 30198080 G A ASCC2 Silent p.L491L 0.40 TCGA-4Z-AA7O-01 22 30776328 30776328 G A RNF215 Silent p.L269L 0.28 TCGA-4Z-AA7O-01 22 31286725 31286725 A G OSBP2 Missense_Mutation p.N545S 0.48 tolerated(0.2) probably_damaging(0.996) TCGA-4Z-AA7O-01 22 38823654 38823654 C T KCNJ4 Missense_Mutation p.V162I 0.50 tolerated(1) benign(0.024) TCGA-4Z-AA7O-01 22 50728888 50728888 G C PLXNB2 Silent p.A42A 0.51 TCGA-4Z-AA7O-01 2 112608431 112608431 T C ANAPC1 Silent p.T524T 0.41 TCGA-4Z-AA7O-01 2 130738114 130738114 G C RAB6C Missense_Mutation p.E142D 0.34 tolerated_low_confidence(0.09) benign(0.058) TCGA-4Z-AA7O-01 2 149225969 149225969 C T MBD5 Missense_Mutation p.H153Y 0.31 deleterious(0.04) benign(0.291) TCGA-4Z-AA7O-01 2 149226293 149226293 C T MBD5 Missense_Mutation p.P261S 0.32 tolerated(0.14) possibly_damaging(0.803) TCGA-4Z-AA7O-01 2 179419718 179419718 C G TTN Missense_Mutation p.E29490Q 0.37 TCGA-4Z-AA7O-01 2 180634325 180634325 G C ZNF385B Missense_Mutation p.S53C 0.30 tolerated(0.27) benign(0.025) TCGA-4Z-AA7O-01 2 197002137 197002137 C G STK17B 3'UTR 0.35 TCGA-4Z-AA7O-01 2 203818841 203818841 A G CARF Missense_Mutation p.K181E 0.39 deleterious_low_confidence(0.03) benign(0.031) TCGA-4Z-AA7O-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.48 deleterious(0.04) benign(0.233) TCGA-4Z-AA7O-01 2 210588334 210588334 A C MAP2 Intron 0.30 TCGA-4Z-AA7O-01 2 213914523 213914523 G T IKZF2 Missense_Mutation p.S163Y 0.41 deleterious(0) probably_damaging(0.966) TCGA-4Z-AA7O-01 2 228883065 228883065 C T SPHKAP Silent p.L835L 0.32 TCGA-4Z-AA7O-01 2 228883152 228883152 C T SPHKAP Silent p.K806K 0.38 TCGA-4Z-AA7O-01 2 228883352 228883352 C T SPHKAP Missense_Mutation p.E740K 0.38 tolerated(0.06) possibly_damaging(0.52) TCGA-4Z-AA7O-01 2 234184594 234184594 C T ATG16L1 Intron 0.05 TCGA-4Z-AA7O-01 2 27731064 27731064 C T GCKR Silent p.I456I 0.37 TCGA-4Z-AA7O-01 2 33335659 33335659 C G LTBP1 Missense_Mutation p.L292V 0.35 tolerated(0.15) benign(0.006) TCGA-4Z-AA7O-01 2 47382372 47382372 C G C2orf61 Missense_Mutation p.A7P 0.39 tolerated_low_confidence(0.18) benign(0.421) TCGA-4Z-AA7O-01 2 65243631 65243631 C T SLC1A4 Silent p.D286D 0.39 TCGA-4Z-AA7O-01 2 90044268 90044268 G A IGKV2D-24 Silent p.Q63Q 0.28 TCGA-4Z-AA7O-01 2 9650194 9650194 G C ADAM17 Missense_Mutation p.L420V 0.27 tolerated(0.36) benign(0.003) TCGA-4Z-AA7O-01 3 111658336 111658336 G A PHLDB2 Silent p.L715L 0.42 TCGA-4Z-AA7O-01 3 112546431 112546431 C G CD200R1L Silent p.L71L 0.12 TCGA-4Z-AA7O-01 3 129695943 129695943 C G TRH Missense_Mutation p.Q205E 0.31 deleterious(0.04) possibly_damaging(0.676) TCGA-4Z-AA7O-01 3 155199338 155199338 C G PLCH1 Missense_Mutation p.E1501Q 0.43 deleterious(0) probably_damaging(0.96) TCGA-4Z-AA7O-01 3 182789116 182789116 C G MCCC1 Missense_Mutation p.G174A 0.36 deleterious(0.01) possibly_damaging(0.861) TCGA-4Z-AA7O-01 3 42166928 42166928 C T TRAK1 Silent p.T36T 0.44 TCGA-4Z-AA7O-01 3 49867474 49867474 C T TRAIP Silent p.K355K 0.29 TCGA-4Z-AA7O-01 3 64580062 64580062 G C ADAMTS9 Missense_Mutation p.Q1410E 0.35 deleterious(0.01) benign(0.348) TCGA-4Z-AA7O-01 3 81539483 81539483 T A GBE1 3'UTR 0.38 TCGA-4Z-AA7O-01 4 114238913 114238913 A G ANK2 Missense_Mutation p.Y915C 0.26 probably_damaging(0.919) TCGA-4Z-AA7O-01 4 119229621 119229621 G A PRSS12 Missense_Mutation p.A534V 0.50 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7O-01 4 153247367 153247367 G C FBXW7 Missense_Mutation p.R479G 0.40 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 4 15964783 15964783 C G FGFBP2 5'UTR 0.09 TCGA-4Z-AA7O-01 4 16590367 16590367 C T LDB2 Missense_Mutation p.R166Q 0.33 tolerated(0.38) benign(0.148) TCGA-4Z-AA7O-01 4 183676247 183676247 G C TENM3 Missense_Mutation p.R1576P 0.38 tolerated(0.26) possibly_damaging(0.453) TCGA-4Z-AA7O-01 4 20569184 20569184 C T SLIT2 Missense_Mutation p.P965L 0.37 deleterious(0) possibly_damaging(0.711) TCGA-4Z-AA7O-01 4 52883281 52883281 C T LRRC66 Intron 0.39 TCGA-4Z-AA7O-01 4 68691511 68691511 C - TMPRSS11D Frame_Shift_Del p.G345Efs*28 0.24 TCGA-4Z-AA7O-01 4 77290740 77290740 C A CCDC158 Nonsense_Mutation p.E396* 0.37 TCGA-4Z-AA7O-01 4 87672041 87672041 G T PTPN13 Splice_Site p.X1023_splice 0.40 TCGA-4Z-AA7O-01 4 88533891 88533891 C G DSPP Missense_Mutation p.Q185E 0.21 probably_damaging(0.962) TCGA-4Z-AA7O-01 5 10442279 10442279 G C ROPN1L 5'UTR 0.41 TCGA-4Z-AA7O-01 5 127485726 127485726 C T SLC12A2 Silent p.F681F 0.59 TCGA-4Z-AA7O-01 5 128364066 128364066 G A SLC27A6 Missense_Mutation p.E495K 0.58 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 5 140175344 140175344 C T PCDHA2 Silent p.N265N 0.70 TCGA-4Z-AA7O-01 5 140262036 140262036 G A PCDHA13 Silent p.P61P 0.67 TCGA-4Z-AA7O-01 5 140517125 140517125 G A PCDHB5 Silent p.S703S 0.62 TCGA-4Z-AA7O-01 5 140745915 140745915 C A PCDHGA5 Missense_Mutation p.A673D 0.72 deleterious_low_confidence(0) benign(0.053) TCGA-4Z-AA7O-01 5 26988407 26988407 A G CDH9 Missense_Mutation p.W12R 0.28 deleterious(0) possibly_damaging(0.726) TCGA-4Z-AA7O-01 5 82837304 82837304 C T VCAN Missense_Mutation p.P2828S 0.10 tolerated(0.25) benign(0.292) TCGA-4Z-AA7O-01 6 127796769 127796769 G A SOGA3 Missense_Mutation p.A801V 0.06 tolerated(0.26) benign(0.056) TCGA-4Z-AA7O-01 6 144999708 144999708 G T UTRN Missense_Mutation p.S2549I 0.25 deleterious(0) probably_damaging(0.953) TCGA-4Z-AA7O-01 6 149068783 149068783 C G UST Missense_Mutation p.R73G 0.70 tolerated(0.18) benign(0.042) TCGA-4Z-AA7O-01 6 149953933 149953933 C G KATNA1 Missense_Mutation p.E94D 0.29 tolerated(1) benign(0.001) TCGA-4Z-AA7O-01 6 151203904 151203904 G C MTHFD1L Missense_Mutation p.D142H 0.14 tolerated(0.1) benign(0.014) TCGA-4Z-AA7O-01 6 152651023 152651023 C G SYNE1 Missense_Mutation p.E4933Q 0.37 probably_damaging(0.998) TCGA-4Z-AA7O-01 6 152774762 152774762 C T SYNE1 Missense_Mutation p.G996R 0.35 possibly_damaging(0.729) TCGA-4Z-AA7O-01 6 160638458 160638458 C T SLC22A2 3'UTR 0.39 TCGA-4Z-AA7O-01 6 25777065 25777065 C G SLC17A4 Silent p.L382L 0.41 TCGA-4Z-AA7O-01 6 25777134 25777134 C T SLC17A4 Silent p.I405I 0.37 TCGA-4Z-AA7O-01 6 26204978 26204978 C T HIST1H4E Missense_Mutation p.R36W 0.49 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7O-01 6 31743869 31743869 C T VWA7 Missense_Mutation p.D129N 0.43 deleterious(0.03) probably_damaging(0.995) TCGA-4Z-AA7O-01 6 32261223 32261223 C T C6orf10 Silent p.Q409Q 0.35 TCGA-4Z-AA7O-01 6 33374620 33374620 G A KIFC1 Missense_Mutation p.E649K 0.47 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 6 34208517 34208517 C T HMGA1 5'UTR 0.46 TCGA-4Z-AA7O-01 6 4032655 4032675 TCCAAAGACAGAAGGTCACGG - PRPF4B In_Frame_Del p.D304_K310del 0.22 TCGA-4Z-AA7O-01 6 5404869 5404869 T G FARS2 Missense_Mutation p.V236G 0.38 deleterious(0) possibly_damaging(0.454) TCGA-4Z-AA7O-01 7 104703795 104703795 C G KMT2E Intron 0.41 TCGA-4Z-AA7O-01 7 138603284 138603284 G C KIAA1549 Nonsense_Mutation p.S363* 0.40 TCGA-4Z-AA7O-01 7 150749532 150749532 C T ASIC3 Silent p.T496T 0.38 TCGA-4Z-AA7O-01 7 151921097 151921097 T A KMT2C Intron 0.26 TCGA-4Z-AA7O-01 7 20201443 20201443 C T MACC1 Missense_Mutation p.A15T 0.39 tolerated(0.89) benign(0) TCGA-4Z-AA7O-01 7 20795234 20795234 A T ABCB5 Missense_Mutation p.Q1254L 0.53 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA7O-01 7 2296602 2296602 C T SNX8 Silent p.L397L 0.42 TCGA-4Z-AA7O-01 7 27872527 27872527 G C JAZF1 Missense_Mutation p.F208L 0.36 deleterious(0.02) benign(0.21) TCGA-4Z-AA7O-01 7 31682479 31682479 G A CCDC129 Missense_Mutation p.V525I 0.43 tolerated(0.33) benign(0.002) TCGA-4Z-AA7O-01 7 43684939 43684939 C T COA1 Missense_Mutation p.E59K 0.29 tolerated(0.48) possibly_damaging(0.687) TCGA-4Z-AA7O-01 7 44259781 44259781 G A CAMK2B Silent p.D627D 0.41 TCGA-4Z-AA7O-01 7 53103770 53103770 C A POM121L12 Missense_Mutation p.P136T 0.44 deleterious(0.01) probably_damaging(0.958) TCGA-4Z-AA7O-01 7 64863321 64863321 G C ZNF92 Silent p.V98V 0.40 TCGA-4Z-AA7O-01 7 90894810 90894810 C T FZD1 Silent p.F205F 0.35 TCGA-4Z-AA7O-01 7 92300796 92300796 G A CDK6 Silent p.A197A 0.27 TCGA-4Z-AA7O-01 8 116430602 116430602 C T TRPS1 Missense_Mutation p.G927R 0.29 deleterious(0) probably_damaging(1) TCGA-4Z-AA7O-01 8 118159214 118159214 G A SLC30A8 Silent p.P31P 0.38 TCGA-4Z-AA7O-01 8 142490057 142490057 G A MROH5 3'UTR 0.32 TCGA-4Z-AA7O-01 8 144942235 144942235 G A EPPK1 Silent p.F1729F 0.44 TCGA-4Z-AA7O-01 8 17228671 17228671 G A MTMR7 Missense_Mutation p.A62V 0.46 deleterious(0.01) probably_damaging(0.912) TCGA-4Z-AA7O-01 8 18623024 18623024 G A PSD3 Nonsense_Mutation p.Q703* 0.40 TCGA-4Z-AA7O-01 8 27294953 27294953 G A PTK2B Silent p.L489L 0.18 TCGA-4Z-AA7O-01 8 41387763 41387763 G T GINS4 Silent p.G14G 0.15 TCGA-4Z-AA7O-01 8 41522339 41522339 C T ANK1 Intron 0.78 TCGA-4Z-AA7O-01 8 48771136 48771136 G A PRKDC Missense_Mutation p.P2135S 0.40 benign(0.031) TCGA-4Z-AA7O-01 8 82630460 82630460 C G ZFAND1 Splice_Site p.X19_splice 0.31 TCGA-4Z-AA7O-01 8 88218341 88218341 C T CNBD1 Silent p.S184S 0.44 TCGA-4Z-AA7O-01 9 130263353 130263353 G A LRSAM1 Silent p.V659V 0.81 TCGA-4Z-AA7O-01 9 131340512 131340512 C - SPTAN1 Frame_Shift_Del p.Q404Kfs*35 0.44 TCGA-4Z-AA7O-01 X 111000832 111000832 A G ALG13 Missense_Mutation p.Y997C 0.40 tolerated(0.37) possibly_damaging(0.819) TCGA-4Z-AA7O-01 X 111095602 111095602 C A TRPC5 Missense_Mutation p.W434L 0.80 tolerated(0.67) possibly_damaging(0.854) TCGA-4Z-AA7O-01 X 136113101 136113101 C G GPR101 Missense_Mutation p.E245Q 0.77 tolerated(0.28) possibly_damaging(0.583) TCGA-4Z-AA7O-01 X 152713304 152713304 G A TREX2 5'UTR 0.79 TCGA-4Z-AA7O-01 X 9622318 9622318 G A TBL1X Missense_Mutation p.S56N 0.71 deleterious(0) possibly_damaging(0.883) TCGA-4Z-AA7Q-01 10 111881991 111881991 C A ADD3 Missense_Mutation p.Q362K 0.11 tolerated(0.3) benign(0.011) TCGA-4Z-AA7Q-01 10 113913196 113913196 G A GPAM 3'UTR 0.17 TCGA-4Z-AA7Q-01 10 27366463 27366463 G A ANKRD26 Missense_Mutation p.A294V 0.06 deleterious(0.04) benign(0.037) TCGA-4Z-AA7Q-01 10 5784247 5784247 G C FAM208B Missense_Mutation p.E839Q 0.08 deleterious(0.01) possibly_damaging(0.544) TCGA-4Z-AA7Q-01 10 5784301 5784301 G A FAM208B Missense_Mutation p.E857K 0.10 tolerated(0.16) benign(0.131) TCGA-4Z-AA7Q-01 10 69648681 69648681 G C SIRT1 Missense_Mutation p.D197H 0.16 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA7Q-01 10 70332214 70332214 C G TET1 Nonsense_Mutation p.S40* 0.15 TCGA-4Z-AA7Q-01 10 70332553 70332553 C G TET1 Nonsense_Mutation p.S153* 0.12 TCGA-4Z-AA7Q-01 10 75277427 75277427 G A USP54 Silent p.A919A 0.19 TCGA-4Z-AA7Q-01 10 75335374 75335374 C T USP54 Missense_Mutation p.V15I 0.09 deleterious(0.01) probably_damaging(0.97) TCGA-4Z-AA7Q-01 10 79567622 79567622 C G DLG5 Silent p.L1576L 0.09 TCGA-4Z-AA7Q-01 10 91468953 91468953 C G KIF20B Silent p.L59L 0.11 TCGA-4Z-AA7Q-01 10 99156031 99156031 C T RRP12 Missense_Mutation p.E133K 0.33 deleterious(0) possibly_damaging(0.795) TCGA-4Z-AA7Q-01 11 105483128 105483128 G C GRIA4 Missense_Mutation p.E72Q 0.11 tolerated(0.09) possibly_damaging(0.501) TCGA-4Z-AA7Q-01 11 108043385 108043385 G C NPAT Missense_Mutation p.P776A 0.17 deleterious(0.01) possibly_damaging(0.742) TCGA-4Z-AA7Q-01 11 108382971 108382971 G C EXPH5 Nonsense_Mutation p.S1088* 0.11 TCGA-4Z-AA7Q-01 11 119547833 119547833 G A PVRL1 Missense_Mutation p.A277V 0.08 tolerated(1) benign(0.007) TCGA-4Z-AA7Q-01 11 13393822 13393822 C A ARNTL Silent p.L310L 0.25 TCGA-4Z-AA7Q-01 11 3068994 3068994 C T CARS Missense_Mutation p.R88K 0.16 tolerated(0.91) benign(0) TCGA-4Z-AA7Q-01 11 47310975 47310975 C A MADD Missense_Mutation p.S916Y 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA7Q-01 11 57297690 57297690 C G TIMM10 5'UTR 0.14 TCGA-4Z-AA7Q-01 11 58385156 58385156 G C ZFP91 Missense_Mutation p.D564H 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4Z-AA7Q-01 11 61081799 61081799 G A DDB1 Nonsense_Mutation p.Q524* 0.15 TCGA-4Z-AA7Q-01 11 62284151 62284151 G A AHNAK 3'UTR 0.12 TCGA-4Z-AA7Q-01 11 62289579 62289579 C T AHNAK Missense_Mutation p.D4104N 0.09 benign(0.005) TCGA-4Z-AA7Q-01 11 62435024 62435024 G A C11orf48 Missense_Mutation p.S170F 0.26 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-4Z-AA7Q-01 11 64888961 64888961 C G FAU Intron 0.14 TCGA-4Z-AA7Q-01 11 71726658 71726658 G A NUMA1 Missense_Mutation p.R631W 0.20 possibly_damaging(0.742) TCGA-4Z-AA7Q-01 11 77911274 77911274 C A USP35 Missense_Mutation p.F344L 0.12 deleterious(0) unknown(0) TCGA-4Z-AA7Q-01 11 85593579 85593579 G C CCDC83 Missense_Mutation p.Q68H 0.10 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 11 93468318 93468318 G C KIAA1731 3'Flank 0.13 TCGA-4Z-AA7Q-01 12 10853858 10853858 G C YBX3 3'UTR 0.12 TCGA-4Z-AA7Q-01 12 11149899 11149899 C G TAS2R20 Silent p.L192L 0.13 TCGA-4Z-AA7Q-01 12 113400499 113400499 C G OAS3 Missense_Mutation p.L626V 0.14 deleterious(0) possibly_damaging(0.588) TCGA-4Z-AA7Q-01 12 120574332 120574332 C A GCN1L1 Nonsense_Mutation p.E2328* 0.26 TCGA-4Z-AA7Q-01 12 120995422 120995422 G T RNF10 Missense_Mutation p.G302W 0.08 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7Q-01 12 122337706 122337706 C T PSMD9 Silent p.F136F 0.10 TCGA-4Z-AA7Q-01 12 125397100 125397100 G C UBC Silent p.V406V 0.05 TCGA-4Z-AA7Q-01 12 14650988 14650988 C T ATF7IP Missense_Mutation p.S1265F 0.06 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA7Q-01 12 26640087 26640087 G C ITPR2 Nonsense_Mutation p.S1823* 0.11 TCGA-4Z-AA7Q-01 12 49426105 49426105 G A KMT2D Missense_Mutation p.S4128L 0.21 unknown(0) TCGA-4Z-AA7Q-01 12 50537765 50537765 G C CERS5 Missense_Mutation p.I91M 0.13 deleterious(0.01) benign(0.232) TCGA-4Z-AA7Q-01 12 54115940 54115940 G A CALCOCO1 Missense_Mutation p.R160W 0.16 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7Q-01 12 55725553 55725553 G A OR6C3 Silent p.V23V 0.27 TCGA-4Z-AA7Q-01 12 56488257 56488262 AGTCCT - ERBB3 In_Frame_Del p.V593_L594del 0.20 TCGA-4Z-AA7Q-01 12 69128497 69128497 G T NUP107 Nonsense_Mutation p.E758* 0.12 TCGA-4Z-AA7Q-01 12 69652546 69652546 C A CPSF6 Missense_Mutation p.P291T 0.13 tolerated(0.37) unknown(0) TCGA-4Z-AA7Q-01 13 109707431 109707431 G T MYO16 Missense_Mutation p.R1007I 0.18 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA7Q-01 13 28896411 28896411 C G FLT1 Silent p.L1013L 0.22 TCGA-4Z-AA7Q-01 13 31205534 31205534 C T USPL1 Missense_Mutation p.S264F 0.11 deleterious(0.02) probably_damaging(0.983) TCGA-4Z-AA7Q-01 13 44455643 44455643 G C LACC1 Silent p.L174L 0.12 TCGA-4Z-AA7Q-01 13 52544886 52544886 C G ATP7B Splice_Site p.X429_splice 0.07 TCGA-4Z-AA7Q-01 13 70293705 70293705 G T KLHL1 Nonsense_Mutation p.S604* 0.12 TCGA-4Z-AA7Q-01 13 84454440 84454440 G A SLITRK1 Silent p.L401L 0.15 TCGA-4Z-AA7Q-01 13 99459947 99459947 C G DOCK9 Missense_Mutation p.E1842Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7Q-01 14 100593087 100593087 G C EVL Missense_Mutation p.E156Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7Q-01 14 102028080 102028080 G A DIO3 Missense_Mutation p.E83K 0.10 tolerated_low_confidence(0.09) benign(0.024) TCGA-4Z-AA7Q-01 14 103390064 103390064 C T AMN Silent p.V20V 0.36 TCGA-4Z-AA7Q-01 14 105409410 105409410 C T AHNAK2 Silent p.V4126V 0.26 TCGA-4Z-AA7Q-01 14 106668019 106668019 C G IGHV3-20 Silent p.L5L 0.12 TCGA-4Z-AA7Q-01 14 23014019 23014019 G T TRAJ1 Missense_Mutation p.G14V 0.14 unknown(0) TCGA-4Z-AA7Q-01 14 24653225 24653225 C G IPO4 Silent p.L616L 0.21 TCGA-4Z-AA7Q-01 14 24683276 24683276 G C MDP1 Missense_Mutation p.T162S 0.30 tolerated(0.88) benign(0.003) TCGA-4Z-AA7Q-01 14 31549802 31549802 C G AP4S1 Missense_Mutation p.F106L 0.09 tolerated(0.09) benign(0) TCGA-4Z-AA7Q-01 14 39583668 39583668 G A GEMIN2 Silent p.L53L 0.18 TCGA-4Z-AA7Q-01 14 50101340 50101340 G T DNAAF2 Missense_Mutation p.F176L 0.16 tolerated(0.05) possibly_damaging(0.867) TCGA-4Z-AA7Q-01 14 63483575 63483575 G A KCNH5 Silent p.D57D 0.24 TCGA-4Z-AA7Q-01 14 68040040 68040040 G C PLEKHH1 Silent p.V592V 0.16 TCGA-4Z-AA7Q-01 15 100692856 100692856 G A ADAMTS17 Silent p.I478I 0.13 TCGA-4Z-AA7Q-01 15 23444013 23444013 G A AC100757.1 5'Flank 0.04 TCGA-4Z-AA7Q-01 15 34015080 34015080 G A RYR3 Missense_Mutation p.G2262R 0.21 benign(0.078) TCGA-4Z-AA7Q-01 15 41023350 41023350 G A RAD51 Missense_Mutation p.D333N 0.16 tolerated(0.16) benign(0.02) TCGA-4Z-AA7Q-01 15 43695943 43695943 G A TUBGCP4 Silent p.Q598Q 0.14 TCGA-4Z-AA7Q-01 15 44087326 44087326 C G SERINC4 Missense_Mutation p.V477L 0.07 tolerated(0.15) benign(0.326) TCGA-4Z-AA7Q-01 15 50763921 50763921 G C USP8 Missense_Mutation p.D260H 0.11 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 15 51772275 51772275 G A DMXL2 Missense_Mutation p.S2209L 0.22 tolerated(0.82) probably_damaging(0.999) TCGA-4Z-AA7Q-01 15 62148526 62148526 G A VPS13C Missense_Mutation p.P3679S 0.18 tolerated(0.09) benign(0.082) TCGA-4Z-AA7Q-01 15 63824774 63824774 C G USP3 Intron 0.25 TCGA-4Z-AA7Q-01 15 63932641 63932641 G A HERC1 Missense_Mutation p.H3871Y 0.21 benign(0.001) TCGA-4Z-AA7Q-01 15 64506152 64506152 T C CSNK1G1 Missense_Mutation p.R206G 0.10 deleterious(0) benign(0.377) TCGA-4Z-AA7Q-01 15 89876445 89876445 C T POLG Missense_Mutation p.E181K 0.25 tolerated(0.25) benign(0.03) TCGA-4Z-AA7Q-01 15 90146110 90146110 G C TICRR Missense_Mutation p.R884T 0.08 deleterious(0.02) possibly_damaging(0.561) TCGA-4Z-AA7Q-01 15 92981806 92981806 G C ST8SIA2 Missense_Mutation p.G172R 0.24 probably_damaging(1) TCGA-4Z-AA7Q-01 16 20838440 20838440 G C AC004381.6 Missense_Mutation p.Q294H 0.12 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA7Q-01 16 2376160 2376160 T C ABCA3 Missense_Mutation p.Y57C 0.23 deleterious(0) probably_damaging(0.964) TCGA-4Z-AA7Q-01 16 24818089 24818089 C T TNRC6A Silent p.F1508F 0.14 TCGA-4Z-AA7Q-01 16 2569287 2569287 G C RP11-20I23.1 Missense_Mutation p.G345A 0.14 unknown(0) TCGA-4Z-AA7Q-01 16 2569386 2569386 G A ATP6V0C Missense_Mutation p.D83N 0.10 tolerated(0.48) benign(0.001) TCGA-4Z-AA7Q-01 16 3140107 3140107 C T ZSCAN10 Missense_Mutation p.R388H 0.22 tolerated(0.06) probably_damaging(0.985) TCGA-4Z-AA7Q-01 16 50324426 50324426 C T ADCY7 Missense_Mutation p.A77V 0.05 tolerated(0.8) benign(0.001) TCGA-4Z-AA7Q-01 16 56397994 56397994 G C AMFR Silent p.L541L 0.28 TCGA-4Z-AA7Q-01 16 69727851 69727851 C G NFAT5 Missense_Mutation p.Q1375E 0.18 probably_damaging(0.966) TCGA-4Z-AA7Q-01 16 85699698 85699698 G C GSE1 Missense_Mutation p.E959Q 0.10 tolerated(0.12) probably_damaging(0.954) TCGA-4Z-AA7Q-01 16 90076391 90076391 C A DBNDD1 Missense_Mutation p.R22I 0.13 tolerated_low_confidence(0.08) benign(0.002) TCGA-4Z-AA7Q-01 17 18881990 18881990 G C FAM83G Missense_Mutation p.S330C 0.12 deleterious(0) possibly_damaging(0.524) TCGA-4Z-AA7Q-01 17 21087050 21087050 C A DHRS7B Silent p.I151I 0.30 TCGA-4Z-AA7Q-01 17 21094471 21094471 C A DHRS7B 3'UTR 0.26 TCGA-4Z-AA7Q-01 17 30625203 30625203 A G RHBDL3 Missense_Mutation p.Y254C 0.17 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 17 38249335 38249335 G T THRA Silent p.G391G 0.30 TCGA-4Z-AA7Q-01 17 38935810 38935810 C T KRT27 Missense_Mutation p.E306K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7Q-01 17 39036108 39036108 G T KRT20 Missense_Mutation p.T292N 0.09 tolerated(0.06) benign(0.038) TCGA-4Z-AA7Q-01 17 40174613 40174613 G T NKIRAS2 Silent p.V97V 0.14 TCGA-4Z-AA7Q-01 17 43922687 43922687 C G SPPL2C Missense_Mutation p.P139A 0.25 tolerated(0.11) benign(0.075) TCGA-4Z-AA7Q-01 17 44782205 44782205 G C NSF Missense_Mutation p.E485D 0.15 tolerated(0.45) benign(0.007) TCGA-4Z-AA7Q-01 17 57351036 57351036 G AA GDPD1 Frame_Shift_Ins p.E283Kfs*9 0.17 TCGA-4Z-AA7Q-01 17 58137307 58137307 G C HEATR6 Missense_Mutation p.L523V 0.07 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7Q-01 17 65714108 65714108 G C NOL11 Silent p.L15L 0.07 TCGA-4Z-AA7Q-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.52 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 17 78084817 78084817 C T GAA Silent p.Y543Y 0.13 TCGA-4Z-AA7Q-01 17 80789424 80789424 C T ZNF750 Missense_Mutation p.D303N 0.09 tolerated(0.14) probably_damaging(0.963) TCGA-4Z-AA7Q-01 18 14752673 14752673 G A ANKRD30B Silent p.L110L 0.12 TCGA-4Z-AA7Q-01 18 14791409 14791409 G C ANKRD30B Missense_Mutation p.E582Q 0.05 deleterious(0.04) possibly_damaging(0.852) TCGA-4Z-AA7Q-01 18 21501525 21501525 G T LAMA3 Missense_Mutation p.G2718V 0.30 probably_damaging(1) TCGA-4Z-AA7Q-01 18 23866291 23866291 A G TAF4B Missense_Mutation p.E473G 0.12 tolerated(0.11) benign(0.411) TCGA-4Z-AA7Q-01 18 2775745 2775745 C T SMCHD1 Missense_Mutation p.A1730V 0.10 tolerated(0.07) possibly_damaging(0.905) TCGA-4Z-AA7Q-01 18 43510773 43510773 C G EPG5 Missense_Mutation p.E761Q 0.17 deleterious(0.05) probably_damaging(0.969) TCGA-4Z-AA7Q-01 18 47788473 47788473 C G CCDC11 Missense_Mutation p.L62F 0.15 tolerated(0.24) possibly_damaging(0.901) TCGA-4Z-AA7Q-01 18 55027262 55027262 G A ST8SIA3 Silent p.L299L 0.13 TCGA-4Z-AA7Q-01 18 61067313 61067313 C G VPS4B Missense_Mutation p.R253T 0.14 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7Q-01 19 1080503 1080503 G C HMHA1 Silent p.S639S 0.08 TCGA-4Z-AA7Q-01 19 10897324 10897324 G T DNM2 Nonsense_Mutation p.E312* 0.10 TCGA-4Z-AA7Q-01 19 13249004 13249004 G A NACC1 Missense_Mutation p.M456I 0.11 deleterious(0) probably_damaging(0.932) TCGA-4Z-AA7Q-01 19 13365962 13365962 C G CACNA1A Missense_Mutation p.E1568Q 0.12 benign(0.002) TCGA-4Z-AA7Q-01 19 17373384 17373384 C G USHBP1 Missense_Mutation p.E207Q 0.36 deleterious(0.03) probably_damaging(0.992) TCGA-4Z-AA7Q-01 19 19613269 19613269 G C GATAD2A Missense_Mutation p.E569Q 0.11 tolerated(0.24) benign(0.009) TCGA-4Z-AA7Q-01 19 20296852 20296852 C G ZNF486 Missense_Mutation p.L72V 0.14 deleterious(0.01) probably_damaging(0.952) TCGA-4Z-AA7Q-01 19 20828086 20828086 C T ZNF626 Intron 0.19 TCGA-4Z-AA7Q-01 19 23927603 23927603 C G ZNF681 Missense_Mutation p.R250T 0.06 deleterious(0.01) unknown(0) TCGA-4Z-AA7Q-01 19 3121016 3121016 G A GNA11 Missense_Mutation p.E307K 0.25 tolerated(0.29) benign(0.028) TCGA-4Z-AA7Q-01 19 35646483 35646483 C T FXYD5 Silent p.L10L 0.09 TCGA-4Z-AA7Q-01 19 36431357 36431357 C T LRFN3 Missense_Mutation p.R344C 0.15 tolerated(0.16) probably_damaging(0.915) TCGA-4Z-AA7Q-01 19 37368723 37368723 C A ZNF345 Missense_Mutation p.Q331K 0.11 tolerated(0.42) benign(0.149) TCGA-4Z-AA7Q-01 19 37966852 37966852 C T ZNF570 Nonsense_Mutation p.Q35* 0.07 TCGA-4Z-AA7Q-01 19 4037636 4037636 C G PIAS4 Silent p.L432L 0.24 TCGA-4Z-AA7Q-01 19 42837913 42837913 C G MEGF8 Nonsense_Mutation p.S115* 0.27 TCGA-4Z-AA7Q-01 19 4310511 4310511 G A FSD1 Silent p.A136A 0.35 TCGA-4Z-AA7Q-01 19 48179158 48179158 C G GLTSCR1 Missense_Mutation p.F45L 0.14 unknown(0) TCGA-4Z-AA7Q-01 19 49538925 49538925 G C CGB1 Missense_Mutation p.S137C 0.07 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA7Q-01 19 51530785 51530785 G A KLK11 5'UTR 0.17 TCGA-4Z-AA7Q-01 19 51646053 51646053 G A SIGLEC7 Missense_Mutation p.V143M 0.10 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7Q-01 19 53304759 53304759 C A ZNF28 Missense_Mutation p.M113I 0.11 tolerated(0.3) benign(0.002) TCGA-4Z-AA7Q-01 19 54695967 54695967 G T TSEN34 Missense_Mutation p.G163V 0.14 tolerated(0.3) benign(0.001) TCGA-4Z-AA7Q-01 19 55966378 55966378 G A ISOC2 Missense_Mutation p.A188V 0.06 deleterious(0.01) probably_damaging(0.925) TCGA-4Z-AA7Q-01 19 56244283 56244283 G C NLRP9 Missense_Mutation p.S305W 0.10 tolerated(0.12) probably_damaging(0.923) TCGA-4Z-AA7Q-01 19 56953062 56953062 C G ZNF667 Missense_Mutation p.Q434H 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-4Z-AA7Q-01 19 57966781 57966781 A G VN1R1 3'UTR 0.12 TCGA-4Z-AA7Q-01 19 6381446 6381446 C G GTF2F1 Missense_Mutation p.E314D 0.17 tolerated(0.14) probably_damaging(0.994) TCGA-4Z-AA7Q-01 1 100598329 100598329 C G SASS6 Silent p.V14V 0.19 TCGA-4Z-AA7Q-01 1 113236709 113236709 G C MOV10 Missense_Mutation p.E404Q 0.10 tolerated(0.09) benign(0.017) TCGA-4Z-AA7Q-01 1 149858546 149858546 G A HIST2H2AC Missense_Mutation p.G8R 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-4Z-AA7Q-01 1 152325342 152325342 C G FLG2 Missense_Mutation p.Q1640H 0.11 possibly_damaging(0.781) TCGA-4Z-AA7Q-01 1 155255679 155255679 C T HCN3 Silent p.F467F 0.09 TCGA-4Z-AA7Q-01 1 162557388 162557388 C G UAP1 Missense_Mutation p.R320G 0.08 tolerated(0.35) benign(0.005) TCGA-4Z-AA7Q-01 1 163044367 163044367 G A RGS4 3'UTR 0.12 TCGA-4Z-AA7Q-01 1 169437968 169437968 G C SLC19A2 Missense_Mutation p.I379M 0.04 deleterious(0.02) possibly_damaging(0.629) TCGA-4Z-AA7Q-01 1 17570709 17570709 C T PADI1 Missense_Mutation p.P655S 0.16 tolerated(0.63) benign(0.012) TCGA-4Z-AA7Q-01 1 18023719 18023719 C T ARHGEF10L Silent p.R1228R 0.16 TCGA-4Z-AA7Q-01 1 197390572 197390572 A G CRB1 Silent p.L538L 0.23 TCGA-4Z-AA7Q-01 1 209948798 209948798 G C TRAF3IP3 Missense_Mutation p.E293D 0.13 tolerated(0.74) possibly_damaging(0.723) TCGA-4Z-AA7Q-01 1 210857360 210857360 G A KCNH1 Nonsense_Mutation p.R745* 0.12 TCGA-4Z-AA7Q-01 1 22176549 22176549 G A HSPG2 Silent p.L2477L 0.10 TCGA-4Z-AA7Q-01 1 234595026 234595026 C T TARBP1 Missense_Mutation p.G528R 0.30 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 1 240370516 240370516 C T FMN2 Nonsense_Mutation p.Q802* 0.09 TCGA-4Z-AA7Q-01 1 27622834 27622834 G C WDTC1 Missense_Mutation p.L297F 0.09 deleterious(0.01) probably_damaging(0.933) TCGA-4Z-AA7Q-01 1 40980428 40980428 C A EXO5 Nonsense_Mutation p.S71* 0.03 TCGA-4Z-AA7Q-01 1 44878130 44878130 C T RNF220 Missense_Mutation p.R121W 0.11 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7Q-01 1 45115364 45115364 G C RNF220 Missense_Mutation p.E493Q 0.06 deleterious(0.03) possibly_damaging(0.585) TCGA-4Z-AA7Q-01 1 47610599 47610599 C T CYP4A22 Silent p.L393L 0.26 TCGA-4Z-AA7Q-01 1 48695126 48695126 A G SLC5A9 Missense_Mutation p.I192V 0.07 deleterious(0.02) benign(0.042) TCGA-4Z-AA7Q-01 1 52704563 52704563 C T ZFYVE9 Missense_Mutation p.P492S 0.09 tolerated_low_confidence(0.19) benign(0.282) TCGA-4Z-AA7Q-01 1 53362165 53362165 C G ECHDC2 3'UTR 0.11 TCGA-4Z-AA7Q-01 1 6169928 6169928 G A CHD5 Silent p.L1835L 0.11 TCGA-4Z-AA7Q-01 1 62910742 62910742 G C USP1 Missense_Mutation p.Q297H 0.08 deleterious(0.05) benign(0.03) TCGA-4Z-AA7Q-01 1 62914230 62914230 C T USP1 Silent p.F505F 0.20 TCGA-4Z-AA7Q-01 1 68962691 68962691 C T DEPDC1 5'UTR 0.14 TCGA-4Z-AA7Q-01 1 85392301 85392301 C G MCOLN2 3'UTR 0.32 TCGA-4Z-AA7Q-01 1 86961221 86961221 C G CLCA1 Nonsense_Mutation p.S659* 0.12 TCGA-4Z-AA7Q-01 1 95332918 95332918 G A SLC44A3 Missense_Mutation p.R476Q 0.07 deleterious(0.01) benign(0.055) TCGA-4Z-AA7Q-01 1 9775628 9775628 G T PIK3CD Silent p.P57P 0.30 TCGA-4Z-AA7Q-01 20 18414394 18414394 C T DZANK1 Missense_Mutation p.E255K 0.21 deleterious(0.01) possibly_damaging(0.881) TCGA-4Z-AA7Q-01 20 29976823 29976823 C G DEFB119 3'UTR 0.10 TCGA-4Z-AA7Q-01 20 40050614 40050614 T G CHD6 Missense_Mutation p.K1554T 0.10 tolerated(0.24) benign(0.001) TCGA-4Z-AA7Q-01 20 45771737 45771737 G C EYA2 Missense_Mutation p.E310Q 0.11 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7Q-01 20 4680302 4680302 G C PRNP Missense_Mutation p.E146Q 0.19 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 20 9391691 9391691 G A PLCB4 Silent p.A657A 0.08 TCGA-4Z-AA7Q-01 21 11038728 11038728 C G BAGE2 Intron 0.10 TCGA-4Z-AA7Q-01 21 43242318 43242318 C G PRDM15 Missense_Mutation p.D979H 0.19 tolerated(0.26) benign(0.297) TCGA-4Z-AA7Q-01 21 45953690 45953703 GGCGCCGGCCGTGT - TSPEAR Frame_Shift_Del p.D136Vfs*116 0.29 TCGA-4Z-AA7Q-01 21 46275171 46275171 C G PTTG1IP Silent p.R150R 0.22 TCGA-4Z-AA7Q-01 22 17472959 17472959 G T GAB4 Silent p.I94I 0.13 TCGA-4Z-AA7Q-01 22 29442814 29442814 C T ZNRF3 Silent p.L285L 0.07 TCGA-4Z-AA7Q-01 22 32217507 32217507 C G DEPDC5 Missense_Mutation p.I630M 0.06 tolerated(0.06) benign(0.439) TCGA-4Z-AA7Q-01 22 38890665 38890665 T C DDX17 Missense_Mutation p.D395G 0.07 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7Q-01 2 109098272 109098272 G A GCC2 Silent p.Q1060Q 0.24 TCGA-4Z-AA7Q-01 2 109455740 109455740 C T CCDC138 Silent p.L436L 0.08 TCGA-4Z-AA7Q-01 2 113958790 113958790 C G PSD4 Missense_Mutation p.S990C 0.27 deleterious(0.04) benign(0.023) TCGA-4Z-AA7Q-01 2 11735423 11735423 G A GREB1 Silent p.A581A 0.16 TCGA-4Z-AA7Q-01 2 141072512 141072512 G A LRP1B Missense_Mutation p.S4266L 0.32 possibly_damaging(0.637) TCGA-4Z-AA7Q-01 2 148693027 148693027 G A ORC4 3'UTR 0.06 TCGA-4Z-AA7Q-01 2 152496476 152496476 C T NEB Silent p.L2928L 0.34 TCGA-4Z-AA7Q-01 2 153004799 153004799 T C STAM2 Silent p.L47L 0.42 TCGA-4Z-AA7Q-01 2 15744000 15744000 G C DDX1 Missense_Mutation p.D180H 0.08 deleterious(0) probably_damaging(0.927) TCGA-4Z-AA7Q-01 2 177017652 177017652 G A HOXD4 Silent p.T250T 0.15 TCGA-4Z-AA7Q-01 2 198265453 198265453 C T SF3B1 Missense_Mutation p.E902K 0.45 deleterious(0.01) probably_damaging(0.926) TCGA-4Z-AA7Q-01 2 202688400 202688400 G A CDK15 Missense_Mutation p.A186T 0.43 deleterious(0.01) probably_damaging(0.983) TCGA-4Z-AA7Q-01 2 215919341 215919341 G C ABCA12 Nonsense_Mutation p.S122* 0.38 TCGA-4Z-AA7Q-01 2 219134734 219134734 C G AAMP Missense_Mutation p.E26Q 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-4Z-AA7Q-01 2 241439947 241439947 C A ANKMY1 Silent p.L765L 0.24 TCGA-4Z-AA7Q-01 2 32476650 32476650 C G NLRC4 Missense_Mutation p.E95Q 0.06 tolerated(0.19) possibly_damaging(0.526) TCGA-4Z-AA7Q-01 2 32724793 32724793 C T BIRC6 Missense_Mutation p.S2883L 0.08 benign(0.251) TCGA-4Z-AA7Q-01 2 37297374 37297374 T C HEATR5B Missense_Mutation p.Q309R 0.30 tolerated(0.05) benign(0.364) TCGA-4Z-AA7Q-01 2 37475346 37475346 G A NDUFAF7 Missense_Mutation p.M393I 0.12 tolerated(0.23) benign(0.143) TCGA-4Z-AA7Q-01 2 37475355 37475355 G T NDUFAF7 Missense_Mutation p.K396N 0.12 tolerated(0.26) benign(0.13) TCGA-4Z-AA7Q-01 2 43519987 43519987 C G THADA Missense_Mutation p.E1602Q 0.29 tolerated(0.37) benign(0.016) TCGA-4Z-AA7Q-01 2 61415506 61415506 C G USP34 Missense_Mutation p.D3458H 0.16 deleterious_low_confidence(0.01) benign(0.071) TCGA-4Z-AA7Q-01 2 61597635 61597635 C G USP34 Missense_Mutation p.E386Q 0.08 deleterious(0) benign(0.115) TCGA-4Z-AA7Q-01 2 89384828 89384828 G T IGKV3-15 Missense_Mutation p.P64T 0.07 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7Q-01 2 89986959 89986959 C T IGKV2D-29 Silent p.F80F 0.09 TCGA-4Z-AA7Q-01 2 99274715 99274718 AATC - MGAT4A Frame_Shift_Del p.D183Mfs*6 0.18 TCGA-4Z-AA7Q-01 3 101136502 101136502 A G SENP7 Silent p.S139S 0.16 TCGA-4Z-AA7Q-01 3 108284199 108284199 C G KIAA1524 Intron 0.20 TCGA-4Z-AA7Q-01 3 112190167 112190167 C T BTLA Missense_Mutation p.E147K 0.16 tolerated(0.22) benign(0.078) TCGA-4Z-AA7Q-01 3 113212124 113212124 G A SPICE1 Nonsense_Mutation p.Q141* 0.12 TCGA-4Z-AA7Q-01 3 118647533 118647533 C G IGSF11 Missense_Mutation p.D83H 0.11 tolerated(0.64) possibly_damaging(0.903) TCGA-4Z-AA7Q-01 3 121554214 121554214 C T EAF2 Missense_Mutation p.R28C 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-4Z-AA7Q-01 3 12560569 12560569 G A TSEN2 Silent p.T324T 0.10 TCGA-4Z-AA7Q-01 3 127298697 127298697 G C TPRA1 Silent p.L48L 0.19 TCGA-4Z-AA7Q-01 3 16217054 16217054 G C GALNT15 Missense_Mutation p.K132N 0.21 tolerated(0.09) benign(0.009) TCGA-4Z-AA7Q-01 3 171969090 171969090 A C FNDC3B Silent p.R183R 0.12 TCGA-4Z-AA7Q-01 3 189604307 189604307 C G TP63 Missense_Mutation p.P492A 0.09 deleterious(0.01) benign(0.411) TCGA-4Z-AA7Q-01 3 189704649 189704649 C G LEPREL1 Silent p.V372V 0.12 TCGA-4Z-AA7Q-01 3 21606081 21606081 C A ZNF385D Missense_Mutation p.L87F 0.07 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA7Q-01 3 47890976 47890976 C G DHX30 Missense_Mutation p.F1041L 0.28 tolerated(0.39) benign(0.007) TCGA-4Z-AA7Q-01 3 50369258 50369258 G C RASSF1 Missense_Mutation p.I168M 0.23 deleterious(0) probably_damaging(0.973) TCGA-4Z-AA7Q-01 3 50392759 50392759 C G TMEM115 3'UTR 0.24 TCGA-4Z-AA7Q-01 3 52678807 52678807 T C PBRM1 Splice_Site p.X272_splice 0.39 TCGA-4Z-AA7Q-01 3 67053835 67053835 C A KBTBD8 Missense_Mutation p.D148E 0.18 tolerated(0.1) benign(0.018) TCGA-4Z-AA7Q-01 3 69168102 69168102 C A LMOD3 Missense_Mutation p.M468I 0.43 tolerated(0.19) benign(0.001) TCGA-4Z-AA7Q-01 4 115750954 115750954 C A NDST4 Missense_Mutation p.D831Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7Q-01 4 126242391 126242391 G A FAT4 Missense_Mutation p.E1609K 0.05 possibly_damaging(0.593) TCGA-4Z-AA7Q-01 4 153884187 153884187 G A FHDC1 Missense_Mutation p.G312S 0.12 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 4 15444145 15444145 G C C1QTNF7 Missense_Mutation p.D205H 0.21 tolerated(0.6) probably_damaging(0.987) TCGA-4Z-AA7Q-01 4 1976590 1976590 G A WHSC1 Missense_Mutation p.D1125N 0.05 deleterious(0.04) probably_damaging(1) TCGA-4Z-AA7Q-01 4 1985216 1985216 C G NELFA Missense_Mutation p.E484Q 0.06 tolerated(0.2) possibly_damaging(0.859) TCGA-4Z-AA7Q-01 4 1993290 1993290 C G NELFA Missense_Mutation p.L132F 0.15 deleterious(0.01) possibly_damaging(0.743) TCGA-4Z-AA7Q-01 4 42577664 42577664 G C ATP8A1 Missense_Mutation p.S394C 0.08 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7Q-01 4 71024186 71024186 C A C4orf40 Missense_Mutation p.P73T 0.23 tolerated(0.06) benign(0.427) TCGA-4Z-AA7Q-01 4 76452511 76452511 C T THAP6 3'UTR 0.17 TCGA-4Z-AA7Q-01 4 76529001 76529001 C T CDKL2 Silent p.K265K 0.06 TCGA-4Z-AA7Q-01 4 84393399 84393399 C T FAM175A Silent p.K86K 0.12 TCGA-4Z-AA7Q-01 5 139876176 139876176 C T ANKHD1 Nonsense_Mutation p.Q773* 0.08 TCGA-4Z-AA7Q-01 5 140724776 140724776 T A PCDHGA3 Missense_Mutation p.F392L 0.12 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-4Z-AA7Q-01 5 145631409 145631409 C T RBM27 Missense_Mutation p.S472L 0.10 tolerated(0.16) benign(0.017) TCGA-4Z-AA7Q-01 5 149212625 149212625 G A PPARGC1B Missense_Mutation p.R330Q 0.10 tolerated(0.77) benign(0.003) TCGA-4Z-AA7Q-01 5 150682870 150682870 C T SLC36A3 Missense_Mutation p.D16N 0.14 tolerated(0.06) possibly_damaging(0.854) TCGA-4Z-AA7Q-01 5 161113293 161113293 C G GABRA6 Silent p.V32V 0.12 TCGA-4Z-AA7Q-01 5 161530907 161530907 G A GABRG2 Missense_Mutation p.R255H 0.26 deleterious(0.01) possibly_damaging(0.727) TCGA-4Z-AA7Q-01 5 72199592 72199592 C G TNPO1 Silent p.L857L 0.14 TCGA-4Z-AA7Q-01 6 10398904 10398904 G C TFAP2A Missense_Mutation p.Q354E 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-4Z-AA7Q-01 6 10529047 10529047 G A GCNT2 5'UTR 0.17 TCGA-4Z-AA7Q-01 6 107088768 107088768 G T QRSL1 Missense_Mutation p.E85D 0.09 tolerated(0.4) benign(0.297) TCGA-4Z-AA7Q-01 6 135318539 135318539 G T HBS1L Silent p.V265V 0.15 TCGA-4Z-AA7Q-01 6 135318559 135318559 G C HBS1L Missense_Mutation p.Q259E 0.17 tolerated(1) benign(0.142) TCGA-4Z-AA7Q-01 6 159184536 159184536 G C SYTL3 Missense_Mutation p.G573A 0.11 deleterious(0) benign(0.192) TCGA-4Z-AA7Q-01 6 168431453 168431453 G T KIF25 Missense_Mutation p.R31S 0.14 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Q-01 6 26200008 26200008 C A HIST1H2BF Silent p.I74I 0.09 TCGA-4Z-AA7Q-01 6 30297475 30297475 G C TRIM39 Missense_Mutation p.L127F 0.10 deleterious(0.03) possibly_damaging(0.846) TCGA-4Z-AA7Q-01 6 30675227 30675227 G C MDC1 Silent p.L1006L 0.07 TCGA-4Z-AA7Q-01 6 31549630 31549630 C G LTB Missense_Mutation p.E57Q 0.05 tolerated(0.48) benign(0.148) TCGA-4Z-AA7Q-01 6 32151407 32151407 C T AGER Missense_Mutation p.E94K 0.08 deleterious(0) probably_damaging(0.982) TCGA-4Z-AA7Q-01 6 34791031 34791031 C T UHRF1BP1 Intron 0.37 TCGA-4Z-AA7Q-01 6 42652567 42652567 C T UBR2 Missense_Mutation p.P1604L 0.06 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7Q-01 6 47754315 47754315 G A OPN5 Silent p.L65L 0.08 TCGA-4Z-AA7Q-01 6 52696661 52696661 C G GSTA5 Missense_Mutation p.K218N 0.16 tolerated(0.24) possibly_damaging(0.688) TCGA-4Z-AA7Q-01 6 56323954 56323954 T A DST Missense_Mutation p.Q5122L 0.24 possibly_damaging(0.886) TCGA-4Z-AA7Q-01 6 74354233 74354233 G A SLC17A5 Missense_Mutation p.A63V 0.10 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 7 104747945 104747945 C G KMT2E Missense_Mutation p.P1014R 0.11 deleterious_low_confidence(0.01) benign(0.13) TCGA-4Z-AA7Q-01 7 107423682 107423682 G A SLC26A3 Missense_Mutation p.L363F 0.06 deleterious(0.02) possibly_damaging(0.878) TCGA-4Z-AA7Q-01 7 107423683 107423683 G T SLC26A3 Silent p.S362S 0.06 TCGA-4Z-AA7Q-01 7 138264033 138264033 G A TRIM24 Missense_Mutation p.D781N 0.14 tolerated(0.21) benign(0.445) TCGA-4Z-AA7Q-01 7 141752636 141752636 C T MGAM Missense_Mutation p.S1004F 0.08 deleterious(0.05) benign(0.139) TCGA-4Z-AA7Q-01 7 149992349 149992349 C T ACTR3C Missense_Mutation p.A13T 0.16 deleterious(0) probably_damaging(0.934) TCGA-4Z-AA7Q-01 7 21840794 21840794 G C DNAH11 Missense_Mutation p.E3363Q 0.22 benign(0.351) TCGA-4Z-AA7Q-01 7 30066098 30066098 G C FKBP14 Silent p.V9V 0.23 TCGA-4Z-AA7Q-01 7 44874100 44874100 C G H2AFV Nonstop_Mutation p.*129Yext*32 0.18 TCGA-4Z-AA7Q-01 7 47892789 47892789 C T PKD1L1 Silent p.V1632V 0.09 TCGA-4Z-AA7Q-01 7 64863787 64863787 G C ZNF92 Missense_Mutation p.E254Q 0.11 deleterious(0.03) benign(0.182) TCGA-4Z-AA7Q-01 7 74148269 74148269 G C GTF2I Missense_Mutation p.E437Q 0.13 deleterious(0.01) benign(0.424) TCGA-4Z-AA7Q-01 7 899956 899956 C G SUN1 Silent p.L572L 0.09 TCGA-4Z-AA7Q-01 7 92148326 92148326 C T PEX1 Missense_Mutation p.D114N 0.12 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Q-01 7 92732104 92732104 G C SAMD9 Missense_Mutation p.L1103V 0.11 deleterious(0) possibly_damaging(0.632) TCGA-4Z-AA7Q-01 7 97820180 97820180 C G LMTK2 Missense_Mutation p.S380C 0.10 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA7Q-01 8 101196920 101196920 C G SPAG1 Missense_Mutation p.F220L 0.12 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 8 110576875 110576875 G A EBAG9 3'UTR 0.12 TCGA-4Z-AA7Q-01 8 124232437 124232437 G A C8orf76 Missense_Mutation p.S350L 0.11 tolerated(0.14) benign(0.011) TCGA-4Z-AA7Q-01 8 144411576 144411576 G C TOP1MT Missense_Mutation p.H102D 0.06 deleterious(0.02) probably_damaging(0.943) TCGA-4Z-AA7Q-01 8 144993407 144993407 C T PLEC Missense_Mutation p.E3665K 0.15 benign(0.031) TCGA-4Z-AA7Q-01 8 1876609 1876609 A G ARHGEF10 Missense_Mutation p.H905R 0.09 tolerated(0.12) benign(0.098) TCGA-4Z-AA7Q-01 8 26501002 26501002 G A DPYSL2 Missense_Mutation p.G287S 0.33 deleterious(0.02) probably_damaging(0.954) TCGA-4Z-AA7Q-01 8 87520834 87520834 G C RMDN1 Missense_Mutation p.R6G 0.27 tolerated_low_confidence(0.07) benign(0.004) TCGA-4Z-AA7Q-01 9 108123610 108123610 C T SLC44A1 Missense_Mutation p.T300I 0.07 deleterious(0) probably_damaging(0.979) TCGA-4Z-AA7Q-01 9 125486352 125486352 C G OR1L4 Silent p.L28L 0.04 TCGA-4Z-AA7Q-01 9 127782985 127782985 G C SCAI Silent p.L215L 0.29 TCGA-4Z-AA7Q-01 9 134464354 134464354 C G RAPGEF1 Missense_Mutation p.E795Q 0.17 tolerated(0.27) benign(0.038) TCGA-4Z-AA7Q-01 9 140006401 140006401 G T DPP7 Silent p.L377L 0.43 TCGA-4Z-AA7Q-01 9 140777418 140777418 G A CACNA1B Intron 0.08 TCGA-4Z-AA7Q-01 9 14819368 14819368 C T FREM1 Missense_Mutation p.D804N 0.21 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 9 21186933 21186933 C G IFNA4 3'UTR 0.16 TCGA-4Z-AA7Q-01 9 35717149 35717149 C T TLN1 Missense_Mutation p.D818N 0.10 tolerated(0.45) benign(0.007) TCGA-4Z-AA7Q-01 9 37492689 37492689 C G POLR1E Missense_Mutation p.Q127E 0.39 tolerated(0.38) benign(0.005) TCGA-4Z-AA7Q-01 9 4125859 4125859 C T GLIS3 Missense_Mutation p.M157I 0.49 tolerated(0.32) probably_damaging(0.946) TCGA-4Z-AA7Q-01 9 5968773 5968773 C A KIAA2026 Missense_Mutation p.Q486H 0.34 deleterious(0.05) probably_damaging(0.998) TCGA-4Z-AA7Q-01 9 90588987 90588987 C G CDK20 Intron 0.21 TCGA-4Z-AA7Q-01 9 93629428 93629428 G A SYK Missense_Mutation p.G288R 0.09 tolerated(0.13) benign(0.307) TCGA-4Z-AA7Q-01 9 95280065 95280065 C T ECM2 Missense_Mutation p.G129R 0.43 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Q-01 X 135570696 135570696 C A BRS3 Silent p.L141L 0.10 TCGA-4Z-AA7Q-01 X 23019298 23019298 T C DDX53 Missense_Mutation p.I375T 0.17 deleterious(0) benign(0.381) TCGA-4Z-AA7Q-01 X 26212104 26212104 T A MAGEB6 Silent p.A47A 0.35 TCGA-4Z-AA7Q-01 X 31089912 31089912 G T FTHL17 Missense_Mutation p.F53L 0.18 deleterious(0.01) benign(0.011) TCGA-4Z-AA7Q-01 X 31986490 31986490 C G DMD Missense_Mutation p.E2194Q 0.17 possibly_damaging(0.607) TCGA-4Z-AA7Q-01 X 38182778 38182778 C G RPGR Splice_Site p.X10_splice 0.22 TCGA-4Z-AA7Q-01 X 40506763 40506764 - CAG CXorf38 In_Frame_Ins p.L3dup 0.15 TCGA-4Z-AA7Q-01 X 44949083 44949083 G T KDM6A Missense_Mutation p.G1215V 0.53 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7Q-01 X 50213368 50213368 C T DGKK RNA 0.22 TCGA-4Z-AA7Q-01 X 63488418 63488418 C T MTMR8 Silent p.%3D 0.27 TCGA-4Z-AA7Q-01 X 70784473 70784473 G C OGT Missense_Mutation p.G820A 0.16 tolerated(0.21) probably_damaging(1) TCGA-4Z-AA7Q-01 X 92928345 92928345 G C NAP1L3 5'UTR 0.12 TCGA-4Z-AA7Q-01 X 96220143 96220143 G A DIAPH2 Missense_Mutation p.D663N 0.38 tolerated(0.45) possibly_damaging(0.528) TCGA-4Z-AA7R-01 10 102116313 102116313 G A SCD Missense_Mutation p.M224I 0.89 tolerated(0.33) benign(0.01) TCGA-4Z-AA7R-01 10 102116493 102116493 G A SCD Silent p.E284E 0.96 TCGA-4Z-AA7R-01 10 11505533 11505533 T C USP6NL Missense_Mutation p.N482S 0.32 tolerated(0.15) benign(0.127) TCGA-4Z-AA7R-01 10 120095856 120095856 C T FAM204A Silent p.T24T 0.88 TCGA-4Z-AA7R-01 10 135440194 135440194 G A FRG2B Missense_Mutation p.S18F 0.09 deleterious(0) benign(0.444) TCGA-4Z-AA7R-01 10 17730072 17730072 G A STAM Nonsense_Mutation p.W115* 0.17 TCGA-4Z-AA7R-01 10 17730073 17730073 G A STAM Nonsense_Mutation p.W115* 0.17 TCGA-4Z-AA7R-01 10 27537446 27537446 G C RP11-85G18.6 Intron 0.28 TCGA-4Z-AA7R-01 10 28378735 28378735 C G MPP7 Missense_Mutation p.D330H 0.14 deleterious(0) possibly_damaging(0.633) TCGA-4Z-AA7R-01 10 37508374 37508374 A T ANKRD30A Missense_Mutation p.N1189I 0.11 deleterious(0) possibly_damaging(0.902) TCGA-4Z-AA7R-01 10 44112224 44112224 A C ZNF485 Missense_Mutation p.N245H 0.47 deleterious(0.05) benign(0.012) TCGA-4Z-AA7R-01 10 50916637 50916637 G C C10orf53 Missense_Mutation p.E150Q 0.58 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-4Z-AA7R-01 10 5567432 5567432 C T CALML3 Silent p.A128A 0.11 TCGA-4Z-AA7R-01 10 5945104 5945104 C T FBXO18 Silent p.L92L 0.39 TCGA-4Z-AA7R-01 10 91352969 91352969 C T PANK1 Missense_Mutation p.M532I 0.44 deleterious(0.02) probably_damaging(0.953) TCGA-4Z-AA7R-01 10 95552582 95552582 G C LGI1 Missense_Mutation p.E196Q 0.36 tolerated(0.25) benign(0.315) TCGA-4Z-AA7R-01 10 95718913 95718913 C T PIPSL RNA 0.45 TCGA-4Z-AA7R-01 10 98290308 98290308 G A TM9SF3 Silent p.I461I 0.33 TCGA-4Z-AA7R-01 11 101765769 101765769 T C ANGPTL5 Missense_Mutation p.I230V 0.35 tolerated(0.38) benign(0.02) TCGA-4Z-AA7R-01 11 102820896 102820896 G A MMP13 Missense_Mutation p.S287F 0.25 tolerated(0.06) benign(0.206) TCGA-4Z-AA7R-01 11 105845038 105845038 A G GRIA4 Missense_Mutation p.D804G 0.23 tolerated(0.16) probably_damaging(0.949) TCGA-4Z-AA7R-01 11 117859186 117859186 G T IL10RA Nonsense_Mutation p.E53* 0.21 TCGA-4Z-AA7R-01 11 11944391 11944391 G C USP47 Missense_Mutation p.E379Q 0.39 tolerated(0.15) possibly_damaging(0.557) TCGA-4Z-AA7R-01 11 1213564 1213564 C T MUC5AC RNA 0.07 TCGA-4Z-AA7R-01 11 124669910 124669910 C T MSANTD2 Missense_Mutation p.E123K 0.40 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-4Z-AA7R-01 11 27520155 27520155 C G LIN7C 3'UTR 0.27 TCGA-4Z-AA7R-01 11 32998058 32998058 G A QSER1 3'UTR 0.31 TCGA-4Z-AA7R-01 11 35282487 35282487 G A SLC1A2 Missense_Mutation p.S560L 0.26 deleterious_low_confidence(0.05) benign(0.036) TCGA-4Z-AA7R-01 11 4945146 4945146 A G OR51G1 Missense_Mutation p.C142R 0.21 tolerated(1) benign(0) TCGA-4Z-AA7R-01 11 58605747 58605747 C T GLYATL2 Missense_Mutation p.R58Q 0.21 tolerated(0.06) benign(0.059) TCGA-4Z-AA7R-01 11 61957733 61957733 G A SCGB1D1 5'UTR 0.21 TCGA-4Z-AA7R-01 11 6238793 6238793 C G FAM160A2 Missense_Mutation p.G689R 0.38 tolerated(0.41) possibly_damaging(0.878) TCGA-4Z-AA7R-01 11 63971054 63971054 A G STIP1 Missense_Mutation p.I507V 0.07 tolerated(0.16) possibly_damaging(0.834) TCGA-4Z-AA7R-01 11 65061699 65061699 C T POLA2 Silent p.F440F 0.60 TCGA-4Z-AA7R-01 11 65108941 65108941 A C DPF2 Missense_Mutation p.T125P 0.76 tolerated(0.16) benign(0.004) TCGA-4Z-AA7R-01 11 68181182 68181182 C G LRP5 Missense_Mutation p.D843E 0.28 tolerated(0.13) benign(0.015) TCGA-4Z-AA7R-01 11 69970465 69970465 G A ANO1 Missense_Mutation p.E303K 0.09 tolerated(0.06) benign(0.125) TCGA-4Z-AA7R-01 11 71939297 71939297 G A INPPL1 Silent p.Q82Q 0.30 TCGA-4Z-AA7R-01 11 82876858 82876858 C G PCF11 Missense_Mutation p.H307D 0.59 tolerated(0.22) possibly_damaging(0.871) TCGA-4Z-AA7R-01 11 82877653 82877653 C T PCF11 Nonsense_Mutation p.Q572* 0.47 TCGA-4Z-AA7R-01 11 96124823 96124823 A C JRKL Missense_Mutation p.N337T 0.09 tolerated(0.34) benign(0.212) TCGA-4Z-AA7R-01 12 104067770 104067770 C A STAB2 Silent p.A819A 0.67 TCGA-4Z-AA7R-01 12 105322047 105322047 G T SLC41A2 Missense_Mutation p.H87N 0.68 tolerated(0.19) benign(0.135) TCGA-4Z-AA7R-01 12 118627710 118627710 C T TAOK3 Missense_Mutation p.D411N 0.33 tolerated(0.22) benign(0.001) TCGA-4Z-AA7R-01 12 121097708 121097708 G A CABP1 Missense_Mutation p.E228K 0.25 deleterious(0.02) possibly_damaging(0.731) TCGA-4Z-AA7R-01 12 132561983 132561983 C T EP400 Missense_Mutation p.A3046V 0.27 possibly_damaging(0.746) TCGA-4Z-AA7R-01 12 14577631 14577631 C G ATF7IP Missense_Mutation p.S261C 0.67 tolerated_low_confidence(0.05) possibly_damaging(0.843) TCGA-4Z-AA7R-01 12 19436443 19436443 C T PLEKHA5 Missense_Mutation p.R515C 0.26 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7R-01 12 25264732 25264732 G A CASC1 Missense_Mutation p.H585Y 0.25 tolerated(0.13) benign(0.155) TCGA-4Z-AA7R-01 12 26492283 26492283 C T ITPR2 3'UTR 0.33 TCGA-4Z-AA7R-01 12 32137163 32137163 A T KIAA1551 Nonsense_Mutation p.K1092* 0.32 TCGA-4Z-AA7R-01 12 33579092 33579092 C T SYT10 Missense_Mutation p.E164K 0.62 tolerated(0.11) benign(0.166) TCGA-4Z-AA7R-01 12 48888622 48888622 G C C12orf54 Missense_Mutation p.R95T 0.26 tolerated(0.45) possibly_damaging(0.765) TCGA-4Z-AA7R-01 12 49426355 49426355 G A KMT2D Nonsense_Mutation p.Q4045* 0.50 TCGA-4Z-AA7R-01 12 53096706 53096706 G A KRT77 Silent p.L171L 0.32 TCGA-4Z-AA7R-01 12 56188172 56188172 C A SARNP Splice_Site p.X126_splice 0.21 TCGA-4Z-AA7R-01 12 56333883 56333883 C T DGKA Missense_Mutation p.H243Y 0.31 deleterious(0) possibly_damaging(0.861) TCGA-4Z-AA7R-01 12 56669820 56669820 G C CS Missense_Mutation p.Q250E 0.28 tolerated(1) benign(0.001) TCGA-4Z-AA7R-01 12 57501443 57501443 G A STAT6 Missense_Mutation p.S67L 0.14 tolerated(0.39) benign(0.002) TCGA-4Z-AA7R-01 12 71139708 71139708 C A PTPRR Silent p.L299L 0.24 TCGA-4Z-AA7R-01 12 9305819 9305819 C G PZP Missense_Mutation p.D1299H 0.71 tolerated(0.08) probably_damaging(0.99) TCGA-4Z-AA7R-01 12 98850059 98850059 G A SLC9A7P1 RNA 0.70 TCGA-4Z-AA7R-01 13 25049672 25049672 C T PARP4 Missense_Mutation p.G618R 0.21 deleterious(0) possibly_damaging(0.77) TCGA-4Z-AA7R-01 13 33686940 33686940 G C STARD13 Missense_Mutation p.Q804E 0.41 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7R-01 13 41239723 41239723 C G FOXO1 Missense_Mutation p.W209C 0.48 tolerated(0.06) probably_damaging(0.984) TCGA-4Z-AA7R-01 13 50586334 50586334 G C TRIM13 Missense_Mutation p.K89N 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-4Z-AA7R-01 13 75880599 75880599 C G TBC1D4 Missense_Mutation p.D868H 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-4Z-AA7R-01 14 105412791 105412791 G A AHNAK2 Silent p.V2999V 0.48 TCGA-4Z-AA7R-01 14 20295891 20295891 G C OR4N2 Missense_Mutation p.R95T 0.11 tolerated(0.52) benign(0.006) TCGA-4Z-AA7R-01 14 21873504 21873504 C G CHD8 Missense_Mutation p.Q1057H 0.19 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7R-01 14 35074854 35074854 C T SNX6 Missense_Mutation p.E126K 0.78 deleterious(0.01) benign(0.218) TCGA-4Z-AA7R-01 14 45414609 45414609 C G KLHL28 Missense_Mutation p.E175Q 0.76 tolerated(0.3) benign(0.03) TCGA-4Z-AA7R-01 14 47120529 47120529 G C RPL10L Silent p.S137S 0.06 TCGA-4Z-AA7R-01 14 62463084 62463084 C G SYT16 Nonsense_Mutation p.S116* 0.46 TCGA-4Z-AA7R-01 14 64444628 64444628 G C SYNE2 Silent p.L433L 0.50 TCGA-4Z-AA7R-01 14 64676130 64676130 G C SYNE2 Intron 0.43 TCGA-4Z-AA7R-01 14 73459863 73459863 G C ZFYVE1 Missense_Mutation p.F397L 0.44 tolerated(0.16) benign(0.049) TCGA-4Z-AA7R-01 14 73987709 73987709 C G HEATR4 Missense_Mutation p.E306Q 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-4Z-AA7R-01 14 73989308 73989308 C G HEATR4 Silent p.V183V 0.13 TCGA-4Z-AA7R-01 14 77710720 77710720 C G TMEM63C Missense_Mutation p.S457C 0.44 deleterious(0.04) benign(0.366) TCGA-4Z-AA7R-01 14 78198904 78198904 C A SNW1 Missense_Mutation p.G272V 0.20 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 14 90455254 90455254 G A TDP1 Silent p.L379L 0.42 TCGA-4Z-AA7R-01 14 90455360 90455360 G A TDP1 Missense_Mutation p.E415K 0.35 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7R-01 14 90755177 90755177 G A NRDE2 Missense_Mutation p.H848Y 0.32 tolerated(0.19) benign(0.41) TCGA-4Z-AA7R-01 14 91766347 91766347 C G CCDC88C Missense_Mutation p.E1235Q 0.17 deleterious(0.03) benign(0.342) TCGA-4Z-AA7R-01 14 92195775 92195775 C G CATSPERB Missense_Mutation p.E17Q 0.53 tolerated(0.29) benign(0.107) TCGA-4Z-AA7R-01 15 101447374 101447374 G A ALDH1A3 Missense_Mutation p.V428M 0.68 deleterious(0.01) possibly_damaging(0.895) TCGA-4Z-AA7R-01 15 102255153 102255153 C T TARSL2 Missense_Mutation p.E194K 0.14 tolerated(0.13) benign(0.06) TCGA-4Z-AA7R-01 15 40502316 40502316 G T BUB1B Nonsense_Mutation p.E764* 0.59 TCGA-4Z-AA7R-01 15 40502383 40502383 G C BUB1B Missense_Mutation p.R786T 0.60 tolerated(0.64) benign(0.004) TCGA-4Z-AA7R-01 15 41853506 41853506 C G TYRO3 Silent p.L102L 0.24 TCGA-4Z-AA7R-01 15 41988408 41988408 C T MGA Silent p.V400V 0.56 TCGA-4Z-AA7R-01 15 41988906 41988906 C T MGA Silent p.L566L 0.50 TCGA-4Z-AA7R-01 15 41988923 41988923 C T MGA Missense_Mutation p.S572L 0.50 tolerated(0.06) benign(0.005) TCGA-4Z-AA7R-01 15 42057198 42057198 C G MGA Missense_Mutation p.S2620C 0.07 tolerated(0.06) possibly_damaging(0.806) TCGA-4Z-AA7R-01 15 43819662 43819662 C T MAP1A Silent p.P1997P 0.19 TCGA-4Z-AA7R-01 15 48826367 48826367 G A FBN1 Nonsense_Mutation p.Q258* 0.65 TCGA-4Z-AA7R-01 15 51741241 51741241 C A DMXL2 Silent p.L3018L 0.17 TCGA-4Z-AA7R-01 15 51741242 51741242 A G DMXL2 Missense_Mutation p.L3018P 0.17 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 15 52720694 52720694 C T MYO5A Missense_Mutation p.E71K 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-4Z-AA7R-01 15 65766619 65766619 G C DPP8 Missense_Mutation p.F504L 0.32 tolerated(0.2) possibly_damaging(0.575) TCGA-4Z-AA7R-01 15 71185127 71185127 C A LRRC49 5'UTR 0.26 TCGA-4Z-AA7R-01 15 71211401 71211401 G A LRRC49 Missense_Mutation p.E199K 0.24 deleterious(0) possibly_damaging(0.851) TCGA-4Z-AA7R-01 15 71535006 71535006 C G THSD4 Silent p.T161T 0.24 TCGA-4Z-AA7R-01 15 74276468 74276468 C T STOML1 Missense_Mutation p.R336Q 0.37 tolerated(0.38) benign(0.001) TCGA-4Z-AA7R-01 15 74277168 74277168 G C STOML1 Missense_Mutation p.Q279E 0.57 tolerated(1) benign(0.001) TCGA-4Z-AA7R-01 15 74911611 74911611 C T CLK3 Missense_Mutation p.S173F 0.21 deleterious(0) possibly_damaging(0.641) TCGA-4Z-AA7R-01 15 78841184 78841184 C G PSMA4 Silent p.L228L 0.74 TCGA-4Z-AA7R-01 15 81180076 81180076 C T KIAA1199 Missense_Mutation p.S280F 0.32 tolerated(0.05) possibly_damaging(0.797) TCGA-4Z-AA7R-01 15 81572111 81572111 G C IL16 Missense_Mutation p.Q359H 0.27 tolerated(0.38) benign(0.001) TCGA-4Z-AA7R-01 15 90623042 90623042 C T ZNF710 Missense_Mutation p.A659V 0.29 tolerated_low_confidence(0.07) benign(0.153) TCGA-4Z-AA7R-01 15 91456142 91456142 C T MAN2A2 Silent p.V835V 0.20 TCGA-4Z-AA7R-01 16 15098116 15098116 G A PDXDC1 Silent p.L105L 0.06 TCGA-4Z-AA7R-01 16 15098117 15098117 G A PDXDC1 Missense_Mutation p.D106N 0.06 tolerated(0.09) benign(0.077) TCGA-4Z-AA7R-01 16 15781248 15781248 C T NDE1 Missense_Mutation p.L135F 0.59 deleterious(0) probably_damaging(0.978) TCGA-4Z-AA7R-01 16 15814749 15814749 G A MYH11 Missense_Mutation p.L1587F 0.49 probably_damaging(0.971) TCGA-4Z-AA7R-01 16 20554329 20554329 C G ACSM2B Silent p.R472R 0.54 TCGA-4Z-AA7R-01 16 20808370 20808370 G C ACSM3 3'UTR 0.21 TCGA-4Z-AA7R-01 16 2098703 2098703 G A TSC2 Silent p.R29R 0.34 TCGA-4Z-AA7R-01 16 2263839 2263839 G C PGP Missense_Mutation p.L286V 0.11 tolerated(0.1) benign(0.34) TCGA-4Z-AA7R-01 16 25251883 25251883 T C ZKSCAN2 Missense_Mutation p.I720V 0.45 tolerated(0.32) benign(0.002) TCGA-4Z-AA7R-01 16 30537028 30537028 C G ZNF768 Missense_Mutation p.E145Q 0.33 tolerated_low_confidence(1) benign(0) TCGA-4Z-AA7R-01 16 3073522 3073522 G A HCFC1R1 Silent p.L35L 0.16 TCGA-4Z-AA7R-01 16 3632331 3632331 G A SLX4 3'UTR 0.46 TCGA-4Z-AA7R-01 16 4749142 4749142 C G ANKS3 Silent p.L440L 0.25 TCGA-4Z-AA7R-01 16 48595966 48595966 G C N4BP1 Silent p.L196L 0.28 TCGA-4Z-AA7R-01 16 50785767 50785767 G A CYLD Missense_Mutation p.D253N 0.38 tolerated(0.16) possibly_damaging(0.715) TCGA-4Z-AA7R-01 16 57059316 57059316 C G NLRC5 Missense_Mutation p.S154C 0.46 deleterious(0.04) benign(0.068) TCGA-4Z-AA7R-01 16 57206175 57206175 C T FAM192A Silent p.L112L 0.27 TCGA-4Z-AA7R-01 16 67763852 67763852 G C RANBP10 Silent p.L329L 0.61 TCGA-4Z-AA7R-01 16 71604204 71604204 C G TAT Missense_Mutation p.E337Q 0.16 tolerated(0.15) benign(0.01) TCGA-4Z-AA7R-01 16 820213 820213 G A MSLNL Silent p.T924T 0.35 TCGA-4Z-AA7R-01 16 85100908 85100908 C T KIAA0513 Silent p.S77S 0.34 TCGA-4Z-AA7R-01 16 85952180 85952180 G A IRF8 Silent p.P253P 0.18 TCGA-4Z-AA7R-01 16 90028237 90028237 C T DEF8 Missense_Mutation p.R319C 0.52 deleterious(0.03) benign(0.24) TCGA-4Z-AA7R-01 17 11651035 11651035 G A DNAH9 Missense_Mutation p.D2188N 0.30 benign(0.074) TCGA-4Z-AA7R-01 17 19576481 19576481 G A ALDH3A2 Silent p.L487L 0.12 TCGA-4Z-AA7R-01 17 26518050 26518050 A G NLK Missense_Mutation p.K414E 0.45 tolerated(0.1) possibly_damaging(0.902) TCGA-4Z-AA7R-01 17 26731971 26731971 G C SLC46A1 Missense_Mutation p.H248Q 0.16 deleterious(0.03) probably_damaging(0.963) TCGA-4Z-AA7R-01 17 27287849 27287851 CTT - SEZ6 In_Frame_Del p.K461del 0.18 TCGA-4Z-AA7R-01 17 29632186 29632186 G C EVI2B Missense_Mutation p.Q148E 0.21 tolerated(0.14) benign(0.388) TCGA-4Z-AA7R-01 17 39274131 39274131 C T KRTAP4-11 Missense_Mutation p.R146H 0.39 deleterious(0.03) unknown(0) TCGA-4Z-AA7R-01 17 3977641 3977651 ACTTTCTAGAG - ZZEF1 Splice_Site p.X1162_splice 0.66 TCGA-4Z-AA7R-01 17 41267787 41267787 C G BRCA1 Missense_Mutation p.L30F 0.28 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7R-01 17 42475793 42475793 C T GPATCH8 Missense_Mutation p.D1218N 0.58 tolerated(0.48) unknown(0) TCGA-4Z-AA7R-01 17 48918137 48918137 C G WFIKKN2 Silent p.L496L 0.19 TCGA-4Z-AA7R-01 17 57297905 57297905 C T GDPD1 5'UTR 0.61 TCGA-4Z-AA7R-01 17 58511421 58511421 C T C17orf64 3'Flank 0.20 TCGA-4Z-AA7R-01 17 61489042 61489042 G A TANC2 Missense_Mutation p.E1180K 0.30 tolerated(0.08) benign(0.028) TCGA-4Z-AA7R-01 17 66429697 66429697 G A WIPI1 Silent p.L238L 0.30 TCGA-4Z-AA7R-01 17 74623587 74623588 AG - ST6GALNAC1 Frame_Shift_Del p.F304Pfs*10 0.25 TCGA-4Z-AA7R-01 17 75478332 75478332 C T SEPT9 Silent p.F276F 0.19 TCGA-4Z-AA7R-01 17 7574021 7574021 C A TP53 Nonsense_Mutation p.E336* 0.86 TCGA-4Z-AA7R-01 17 77925353 77925353 C G TBC1D16 Missense_Mutation p.E329Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7R-01 17 77925392 77925392 C A TBC1D16 Nonsense_Mutation p.E316* 0.25 TCGA-4Z-AA7R-01 17 78447223 78447223 C A NPTX1 Missense_Mutation p.G225V 0.26 tolerated(0.08) benign(0.045) TCGA-4Z-AA7R-01 17 79429801 79429801 C G RP11-1055B8.7 Missense_Mutation p.F2473L 0.32 benign(0.21) TCGA-4Z-AA7R-01 17 9631585 9631585 G C USP43 Missense_Mutation p.E884Q 0.72 tolerated(0.29) benign(0.013) TCGA-4Z-AA7R-01 18 18595438 18595438 G T ROCK1 Missense_Mutation p.T455N 0.88 tolerated(0.59) benign(0.001) TCGA-4Z-AA7R-01 18 29339723 29339724 - T SLC25A52 3'UTR 0.49 TCGA-4Z-AA7R-01 18 31432910 31432910 C T NOL4 Missense_Mutation p.E605K 0.12 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7R-01 18 48190814 48190814 C G MAPK4 Silent p.L162L 0.45 TCGA-4Z-AA7R-01 18 60639880 60639880 G C PHLPP1 Missense_Mutation p.E1232Q 0.89 deleterious(0.04) probably_damaging(1) TCGA-4Z-AA7R-01 18 74778342 74778342 C A MBP Splice_Site p.X18_splice 0.90 TCGA-4Z-AA7R-01 19 1052104 1052104 G A ABCA7 Silent p.L1042L 0.33 TCGA-4Z-AA7R-01 19 11606809 11606809 G A ZNF653 Missense_Mutation p.S172L 0.36 deleterious(0) benign(0.119) TCGA-4Z-AA7R-01 19 12187195 12187195 G A ZNF844 Missense_Mutation p.M420I 0.25 tolerated(0.27) benign(0.006) TCGA-4Z-AA7R-01 19 13419017 13419017 C T CACNA1A Missense_Mutation p.M610I 0.29 possibly_damaging(0.584) TCGA-4Z-AA7R-01 19 17988632 17988632 C A SLC5A5 Missense_Mutation p.Q267K 0.59 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA7R-01 19 18391571 18391571 C T JUND Missense_Mutation p.E242K 0.33 deleterious(0) probably_damaging(0.97) TCGA-4Z-AA7R-01 19 19258567 19258567 C T MEF2B Silent p.E111E 0.65 TCGA-4Z-AA7R-01 19 19823780 19823780 C T ZNF14 Missense_Mutation p.E104K 0.32 tolerated(0.26) probably_damaging(0.968) TCGA-4Z-AA7R-01 19 20808070 20808070 C G ZNF626 Missense_Mutation p.E205Q 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-4Z-AA7R-01 19 33167232 33167232 C T RGS9BP Silent p.H21H 0.27 TCGA-4Z-AA7R-01 19 33390834 33390834 G A CEP89 Missense_Mutation p.H602Y 0.49 deleterious(0.04) possibly_damaging(0.892) TCGA-4Z-AA7R-01 19 35434264 35434264 G C ZNF30 Missense_Mutation p.D133H 0.42 tolerated(0.23) benign(0.263) TCGA-4Z-AA7R-01 19 36594265 36594265 G A WDR62 Missense_Mutation p.A1179T 0.20 tolerated(0.6) benign(0.1) TCGA-4Z-AA7R-01 19 37038898 37038898 C T ZNF529 Missense_Mutation p.E188K 0.36 tolerated(0.14) benign(0.007) TCGA-4Z-AA7R-01 19 37734274 37734274 C T ZNF383 Missense_Mutation p.S379L 0.11 tolerated(0.06) probably_damaging(0.997) TCGA-4Z-AA7R-01 19 40368730 40368730 G A FCGBP Silent p.P4206P 0.42 TCGA-4Z-AA7R-01 19 42381454 42381454 G A CD79A Splice_Site p.X27_splice 0.13 TCGA-4Z-AA7R-01 19 42791596 42791596 A T CIC Missense_Mutation p.N193Y 0.42 possibly_damaging(0.862) TCGA-4Z-AA7R-01 19 42796243 42796243 C T CIC Silent p.I964I 0.35 TCGA-4Z-AA7R-01 19 42818496 42818496 G A TMEM145 Missense_Mutation p.E65K 0.40 tolerated(0.57) benign(0.002) TCGA-4Z-AA7R-01 19 4345772 4345772 G C MPND Missense_Mutation p.D109H 0.19 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7R-01 19 44832114 44832114 A T ZNF112 Silent p.G738G 0.33 TCGA-4Z-AA7R-01 19 45281355 45281355 G C CBLC Missense_Mutation p.R56P 0.45 deleterious(0) possibly_damaging(0.812) TCGA-4Z-AA7R-01 19 47440550 47440550 C G ARHGAP35 Missense_Mutation p.I1237M 0.37 tolerated(0.16) benign(0.329) TCGA-4Z-AA7R-01 19 47653554 47653554 C G SAE1 Silent p.L102L 0.53 TCGA-4Z-AA7R-01 19 48205453 48205453 C T GLTSCR1 Silent p.S1488S 0.60 TCGA-4Z-AA7R-01 19 4902765 4902765 C A ARRDC5 Missense_Mutation p.G39W 0.11 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 19 52537105 52537105 C T ZNF432 Silent p.K609K 0.36 TCGA-4Z-AA7R-01 19 52538122 52538122 G A ZNF432 Silent p.F270F 0.38 TCGA-4Z-AA7R-01 19 53572488 53572488 G T ZNF160 Silent p.V433V 0.04 TCGA-4Z-AA7R-01 19 53912068 53912068 C G ZNF765 Missense_Mutation p.F420L 0.35 deleterious(0) probably_damaging(0.918) TCGA-4Z-AA7R-01 19 54212032 54212032 C G MIR518C RNA 0.48 TCGA-4Z-AA7R-01 19 54744262 54744262 G A LILRA6 Silent p.P382P 0.15 TCGA-4Z-AA7R-01 19 58189548 58189548 C T ZSCAN4 Nonsense_Mutation p.Q193* 0.21 TCGA-4Z-AA7R-01 19 58500015 58500015 C T ZNF606 Silent p.R84R 0.31 TCGA-4Z-AA7R-01 19 58774109 58774109 G A ZNF544 Missense_Mutation p.E713K 0.12 deleterious(0.01) possibly_damaging(0.458) TCGA-4Z-AA7R-01 19 58929161 58929161 C T ZNF584 3'UTR 0.51 TCGA-4Z-AA7R-01 19 6496225 6496225 G A TUBB4A Silent p.S95S 0.24 TCGA-4Z-AA7R-01 1 109565995 109565995 T C WDR47 Missense_Mutation p.D47G 0.60 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7R-01 1 110170872 110170872 G A AMPD2 Silent p.L470L 0.54 TCGA-4Z-AA7R-01 1 111737291 111737291 G C DENND2D Missense_Mutation p.L235V 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7R-01 1 114380274 114380274 G T PTPN22 Missense_Mutation p.S583Y 0.37 deleterious(0) probably_damaging(0.967) TCGA-4Z-AA7R-01 1 114380651 114380651 C T PTPN22 Silent p.Q457Q 0.62 TCGA-4Z-AA7R-01 1 11561453 11561453 G A PTCHD2 Missense_Mutation p.R135Q 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-4Z-AA7R-01 1 118623860 118623860 A C SPAG17 Silent p.P691P 0.07 TCGA-4Z-AA7R-01 1 12884824 12884824 C A PRAMEF11 Silent p.L429L 0.07 TCGA-4Z-AA7R-01 1 145438911 145438911 G A TXNIP Missense_Mutation p.E37K 0.44 tolerated(0.55) benign(0.019) TCGA-4Z-AA7R-01 1 151149308 151149308 C G VPS72 Missense_Mutation p.D314H 0.39 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7R-01 1 151280248 151280248 G T PI4KB Missense_Mutation p.F340L 0.20 deleterious(0.02) benign(0.386) TCGA-4Z-AA7R-01 1 152187003 152187003 C T HRNR Missense_Mutation p.E2368K 0.12 unknown(0) TCGA-4Z-AA7R-01 1 153737531 153737531 G A INTS3 Silent p.L694L 0.33 TCGA-4Z-AA7R-01 1 155006975 155006975 G A DCST1 Silent p.P42P 0.05 TCGA-4Z-AA7R-01 1 156228844 156228844 C T SMG5 Silent p.Q798Q 0.48 TCGA-4Z-AA7R-01 1 158576528 158576528 G T OR10Z1 Missense_Mutation p.Q100H 0.64 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7R-01 1 158615060 158615060 T A SPTA1 Missense_Mutation p.Q1371L 0.28 tolerated(0.07) benign(0.01) TCGA-4Z-AA7R-01 1 159778006 159778006 G A FCRL6 Missense_Mutation p.E31K 0.62 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7R-01 1 16091473 16091473 G A FBLIM1 5'UTR 0.62 TCGA-4Z-AA7R-01 1 161087955 161087955 G A NIT1 5'UTR 0.64 TCGA-4Z-AA7R-01 1 161726775 161726775 G C DUSP12 3'UTR 0.08 TCGA-4Z-AA7R-01 1 167088545 167088545 C T DUSP27 Missense_Mutation p.A166V 0.70 deleterious(0.02) probably_damaging(0.996) TCGA-4Z-AA7R-01 1 171509783 171509783 C T PRRC2C Missense_Mutation p.L1058F 0.74 unknown(0) TCGA-4Z-AA7R-01 1 17292551 17292551 G C CROCC Missense_Mutation p.E1545Q 0.72 possibly_damaging(0.607) TCGA-4Z-AA7R-01 1 179815742 179815742 G C TOR1AIP2 Missense_Mutation p.P293A 0.30 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7R-01 1 183097819 183097819 G A LAMC1 Missense_Mutation p.E1072K 0.06 tolerated(0.12) possibly_damaging(0.603) TCGA-4Z-AA7R-01 1 185153387 185153387 C T SWT1 Missense_Mutation p.S384L 0.16 deleterious(0.03) benign(0.038) TCGA-4Z-AA7R-01 1 186106801 186106801 G A HMCN1 Splice_Site p.X4585_splice 0.12 TCGA-4Z-AA7R-01 1 228481900 228481900 G A OBSCN Missense_Mutation p.E4156K 0.49 probably_damaging(0.991) TCGA-4Z-AA7R-01 1 228494710 228494710 G A OBSCN Missense_Mutation p.R4969H 0.38 probably_damaging(0.932) TCGA-4Z-AA7R-01 1 229773523 229773523 C T URB2 Missense_Mutation p.L1055F 0.70 tolerated(0.07) benign(0.11) TCGA-4Z-AA7R-01 1 234041363 234041363 G T SLC35F3 Nonsense_Mutation p.E48* 0.27 TCGA-4Z-AA7R-01 1 249144597 249144597 C G ZNF692 Missense_Mutation p.E463Q 0.35 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 1 249144981 249144981 C G ZNF692 Splice_Site p.X390_splice 0.37 TCGA-4Z-AA7R-01 1 34258086 34258086 G T CSMD2 Silent p.G456G 0.26 TCGA-4Z-AA7R-01 1 35480669 35480669 C T ZMYM6 Missense_Mutation p.E175K 0.18 deleterious(0.03) benign(0.004) TCGA-4Z-AA7R-01 1 36563100 36563100 C T COL8A2 3'UTR 0.32 TCGA-4Z-AA7R-01 1 41990549 41990549 C T HIVEP3 Missense_Mutation p.R1747Q 0.27 probably_damaging(0.996) TCGA-4Z-AA7R-01 1 44684734 44684734 G A DMAP1 Missense_Mutation p.E243K 0.76 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7R-01 1 54605292 54605292 G A CDCP2 Silent p.L417L 0.65 TCGA-4Z-AA7R-01 1 65849957 65849957 C T DNAJC6 Nonsense_Mutation p.R250* 0.20 TCGA-4Z-AA7R-01 1 66083654 66083654 C T LEPR Silent p.I740I 0.24 TCGA-4Z-AA7R-01 1 77987619 77987619 C T AK5 Silent p.F473F 0.06 TCGA-4Z-AA7R-01 1 87108359 87108359 G T RP4-651E10.4 Intron 0.67 TCGA-4Z-AA7R-01 20 18037360 18037360 C A OVOL2 Nonsense_Mutation p.E88* 0.56 TCGA-4Z-AA7R-01 20 34022680 34022680 G A GDF5OS Missense_Mutation p.E242K 0.25 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-4Z-AA7R-01 20 3673531 3673531 C T SIGLEC1 Silent p.T1252T 0.32 TCGA-4Z-AA7R-01 20 39990662 39990662 G A EMILIN3 Missense_Mutation p.S516L 0.24 tolerated(0.05) possibly_damaging(0.576) TCGA-4Z-AA7R-01 20 422350 422350 C G TBC1D20 Intron 0.63 TCGA-4Z-AA7R-01 20 45008910 45008910 G C ELMO2 Silent p.L263L 0.23 TCGA-4Z-AA7R-01 20 4776603 4776603 C T RASSF2 Missense_Mutation p.E49K 0.56 tolerated(0.56) possibly_damaging(0.808) TCGA-4Z-AA7R-01 20 62724217 62724217 C T OPRL1 Silent p.L48L 0.36 TCGA-4Z-AA7R-01 21 38538315 38538315 G A TTC3 Missense_Mutation p.E1267K 0.32 tolerated(0.11) benign(0.035) TCGA-4Z-AA7R-01 21 46323308 46323308 G A ITGB2 Silent p.L157L 0.54 TCGA-4Z-AA7R-01 22 17280750 17280750 G A XKR3 Missense_Mutation p.S167L 0.12 deleterious(0) benign(0.066) TCGA-4Z-AA7R-01 22 17618932 17618932 C G CECR5 Missense_Mutation p.K417N 0.29 tolerated(0.28) benign(0.275) TCGA-4Z-AA7R-01 22 19175538 19175538 C G CLTCL1 Silent p.V1463V 0.33 TCGA-4Z-AA7R-01 22 21801095 21801095 C T HIC2 3'UTR 0.21 TCGA-4Z-AA7R-01 22 22892462 22892462 C T PRAME Silent p.L213L 0.20 TCGA-4Z-AA7R-01 22 30077528 30077528 G T NF2 Missense_Mutation p.D559Y 0.19 deleterious(0.04) benign(0.021) TCGA-4Z-AA7R-01 22 30762215 30762215 C A CCDC157 Missense_Mutation p.L76M 0.36 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7R-01 22 30782063 30782063 C T RNF215 Missense_Mutation p.R166Q 0.27 tolerated(0.05) possibly_damaging(0.575) TCGA-4Z-AA7R-01 22 37452445 37452445 C T KCTD17 Silent p.V135V 0.79 TCGA-4Z-AA7R-01 22 41677018 41677018 C T RANGAP1 Missense_Mutation p.E11K 0.26 tolerated(0.1) possibly_damaging(0.517) TCGA-4Z-AA7R-01 22 41936745 41936745 C T POLR3H Missense_Mutation p.D56N 0.29 deleterious(0) probably_damaging(0.952) TCGA-4Z-AA7R-01 22 45132922 45132922 G C PRR5 Missense_Mutation p.R344T 0.54 tolerated_low_confidence(0.26) benign(0.212) TCGA-4Z-AA7R-01 2 102632495 102632495 G A IL1R2 Silent p.V165V 0.48 TCGA-4Z-AA7R-01 2 109381406 109381406 G T RANBP2 Missense_Mutation p.D1471Y 0.40 deleterious(0.01) probably_damaging(0.948) TCGA-4Z-AA7R-01 2 130833076 130833076 T C POTEF Missense_Mutation p.M657V 0.38 deleterious_low_confidence(0) benign(0.003) TCGA-4Z-AA7R-01 2 153575056 153575056 C T ARL6IP6 5'UTR 0.23 TCGA-4Z-AA7R-01 2 171572874 171572874 G A SP5 Missense_Mutation p.D53N 0.24 deleterious(0.04) possibly_damaging(0.539) TCGA-4Z-AA7R-01 2 172305263 172305263 C T DCAF17 Missense_Mutation p.R132C 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-4Z-AA7R-01 2 172334511 172334511 C G DCAF17 Silent p.L399L 0.43 TCGA-4Z-AA7R-01 2 179429788 179429788 G T TTN Nonsense_Mutation p.S27024* 0.04 TCGA-4Z-AA7R-01 2 179455699 179455699 C G TTN Missense_Mutation p.K20251N 0.14 TCGA-4Z-AA7R-01 2 179481631 179481631 G T TTN Silent p.T15995T 0.65 TCGA-4Z-AA7R-01 2 179566789 179566789 G A TTN Silent p.I10172I 0.22 TCGA-4Z-AA7R-01 2 179605000 179605000 G A TTN Silent p.V4320V 0.78 TCGA-4Z-AA7R-01 2 1796148 1796148 G T MYT1L Missense_Mutation p.A1120E 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-4Z-AA7R-01 2 192821015 192821015 C T TMEFF2 Missense_Mutation p.E279K 0.80 deleterious(0.01) benign(0.008) TCGA-4Z-AA7R-01 2 192821051 192821051 C T TMEFF2 Missense_Mutation p.E267K 0.82 deleterious(0.05) benign(0.255) TCGA-4Z-AA7R-01 2 20145699 20145701 CTC - WDR35 In_Frame_Del p.R575_V576delinsL 0.71 TCGA-4Z-AA7R-01 2 203848363 203848363 C T CARF 3'UTR 0.33 TCGA-4Z-AA7R-01 2 20402050 20402050 G A SDC1 3'UTR 0.79 TCGA-4Z-AA7R-01 2 219399360 219399360 C G USP37 Missense_Mutation p.L250F 0.56 deleterious(0.01) possibly_damaging(0.793) TCGA-4Z-AA7R-01 2 220331989 220331989 C T SPEG Missense_Mutation p.A992V 0.46 benign(0.053) TCGA-4Z-AA7R-01 2 227660640 227660640 C G IRS1 Missense_Mutation p.E939Q 0.40 tolerated(0.12) possibly_damaging(0.815) TCGA-4Z-AA7R-01 2 233655501 233655501 G A GIGYF2 Missense_Mutation p.R291Q 0.53 probably_damaging(0.992) TCGA-4Z-AA7R-01 2 237240104 237240104 C G IQCA1 Missense_Mutation p.Q757H 0.86 tolerated(0.13) benign(0.004) TCGA-4Z-AA7R-01 2 24521615 24521615 G A ITSN2 Silent p.L471L 0.10 TCGA-4Z-AA7R-01 2 26676409 26676409 G A DRC1 Silent p.K637K 0.46 TCGA-4Z-AA7R-01 2 27352398 27352398 G T ABHD1 Missense_Mutation p.C174F 0.19 deleterious(0) probably_damaging(0.984) TCGA-4Z-AA7R-01 2 27802104 27802104 C G C2orf16 Missense_Mutation p.L889V 0.26 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7R-01 2 37292101 37292101 G A HEATR5B Missense_Mutation p.H456Y 0.27 tolerated(0.06) possibly_damaging(0.749) TCGA-4Z-AA7R-01 2 42396763 42396763 C T EML4 Silent p.F4F 0.24 TCGA-4Z-AA7R-01 2 44051365 44051365 G A ABCG5 Missense_Mutation p.L371F 0.36 deleterious(0) possibly_damaging(0.833) TCGA-4Z-AA7R-01 2 44152234 44152234 C G LRPPRC Missense_Mutation p.Q956H 0.45 tolerated(0.05) benign(0.02) TCGA-4Z-AA7R-01 2 54001447 54001447 G C CHAC2 Missense_Mutation p.D114H 0.24 deleterious(0.01) possibly_damaging(0.776) TCGA-4Z-AA7R-01 2 67631699 67631699 G C ETAA1 Missense_Mutation p.D629H 0.29 deleterious(0.02) unknown(0) TCGA-4Z-AA7R-01 2 73682348 73682348 G T ALMS1 Nonsense_Mutation p.E2533* 0.10 TCGA-4Z-AA7R-01 2 80101449 80101449 C T CTNNA2 Missense_Mutation p.A278V 0.42 tolerated(0.49) benign(0.005) TCGA-4Z-AA7R-01 2 86669288 86669288 G C KDM3A Missense_Mutation p.E40Q 0.18 tolerated(0.19) benign(0.069) TCGA-4Z-AA7R-01 2 9484712 9484712 A T ASAP2 Missense_Mutation p.N301Y 0.19 deleterious(0) probably_damaging(0.982) TCGA-4Z-AA7R-01 3 115395382 115395382 G C GAP43 Missense_Mutation p.E221Q 0.57 tolerated(0.13) probably_damaging(0.992) TCGA-4Z-AA7R-01 3 118906814 118906814 C T UPK1B Missense_Mutation p.L88F 0.52 deleterious(0.01) probably_damaging(0.97) TCGA-4Z-AA7R-01 3 121207489 121207489 A T POLQ Nonsense_Mutation p.L1430* 0.69 TCGA-4Z-AA7R-01 3 125313678 125313678 G A OSBPL11 5'UTR 0.22 TCGA-4Z-AA7R-01 3 130095202 130095202 G T COL6A5 Missense_Mutation p.A64S 0.08 tolerated(0.07) benign(0.19) TCGA-4Z-AA7R-01 3 130454799 130454799 G C PIK3R4 Missense_Mutation p.L261V 0.74 deleterious(0.01) probably_damaging(0.984) TCGA-4Z-AA7R-01 3 133109176 133109176 G C TMEM108 Missense_Mutation p.E535Q 0.25 tolerated(0.05) benign(0.019) TCGA-4Z-AA7R-01 3 133524709 133524709 C T SRPRB Missense_Mutation p.S6L 0.20 tolerated_low_confidence(0.11) benign(0.001) TCGA-4Z-AA7R-01 3 134339688 134339688 C G KY Missense_Mutation p.K165N 0.70 tolerated(0.09) benign(0.155) TCGA-4Z-AA7R-01 3 138227279 138227279 A G CEP70 Splice_Site p.X350_splice 0.19 TCGA-4Z-AA7R-01 3 142224099 142224099 C A ATR Missense_Mutation p.S1693I 0.03 tolerated(0.06) possibly_damaging(0.638) TCGA-4Z-AA7R-01 3 147130382 147130382 C T ZIC1 Missense_Mutation p.H354Y 0.25 deleterious(0) probably_damaging(0.961) TCGA-4Z-AA7R-01 3 164905990 164905990 C T SLITRK3 Missense_Mutation p.G877S 0.42 tolerated_low_confidence(0.47) benign(0.014) TCGA-4Z-AA7R-01 3 17053562 17053562 G C PLCL2 Missense_Mutation p.L782F 0.19 deleterious(0.01) possibly_damaging(0.563) TCGA-4Z-AA7R-01 3 170723753 170723753 C T SLC2A2 Missense_Mutation p.E252K 0.15 tolerated(0.45) benign(0.009) TCGA-4Z-AA7R-01 3 179051938 179051938 G C ZNF639 Missense_Mutation p.E396Q 0.53 deleterious(0.03) possibly_damaging(0.86) TCGA-4Z-AA7R-01 3 179052001 179052001 G A ZNF639 Missense_Mutation p.E417K 0.57 tolerated(0.05) probably_damaging(0.971) TCGA-4Z-AA7R-01 3 188583994 188583994 C G LPP Missense_Mutation p.L473V 0.63 deleterious(0.01) benign(0.118) TCGA-4Z-AA7R-01 3 195453330 195453330 G A MUC20 Missense_Mutation p.R619Q 0.22 tolerated(1) unknown(0) TCGA-4Z-AA7R-01 3 39170378 39170378 C T TTC21A Silent p.S624S 0.27 TCGA-4Z-AA7R-01 3 39178763 39178763 C G TTC21A Nonsense_Mutation p.S1119* 0.29 TCGA-4Z-AA7R-01 3 44776318 44776318 A G ZNF501 Silent p.K135K 0.06 TCGA-4Z-AA7R-01 3 44951635 44951635 G C TGM4 Missense_Mutation p.E461Q 0.60 tolerated(0.35) benign(0.116) TCGA-4Z-AA7R-01 3 47103716 47103716 C T SETD2 Missense_Mutation p.R2077Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7R-01 3 49137692 49137692 G C QARS Silent p.L365L 0.54 TCGA-4Z-AA7R-01 3 49158974 49158974 C A LAMB2 Nonsense_Mutation p.E1718* 0.51 TCGA-4Z-AA7R-01 3 49249249 49249249 C T CCDC36 Silent p.L12L 0.55 TCGA-4Z-AA7R-01 3 52727467 52727467 C G GNL3 Missense_Mutation p.P411A 0.53 tolerated(0.5) benign(0.103) TCGA-4Z-AA7R-01 3 58155465 58155465 C T FLNB Silent p.L2553L 0.40 TCGA-4Z-AA7R-01 3 97198175 97198175 G C EPHA6 Missense_Mutation p.E681Q 0.41 tolerated(0.09) possibly_damaging(0.628) TCGA-4Z-AA7R-01 3 97664031 97664031 G C MINA Silent p.V465V 0.50 TCGA-4Z-AA7R-01 4 100126140 100126140 G A ADH6 Missense_Mutation p.H349Y 0.31 deleterious(0.02) benign(0.329) TCGA-4Z-AA7R-01 4 100273869 100273869 G C ADH1C 5'UTR 0.29 TCGA-4Z-AA7R-01 4 110433152 110433152 C G SEC24B Missense_Mutation p.R606G 0.16 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 4 123260523 123260523 G C KIAA1109 Missense_Mutation p.Q4104H 0.28 benign(0) TCGA-4Z-AA7R-01 4 126371373 126371373 C G FAT4 Missense_Mutation p.P3068A 0.21 possibly_damaging(0.773) TCGA-4Z-AA7R-01 4 129812216 129812216 C T SCLT1 Missense_Mutation p.E636K 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-4Z-AA7R-01 4 15063847 15063847 G A CPEB2 Missense_Mutation p.R947Q 0.58 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4Z-AA7R-01 4 157771482 157771482 T C PDGFC Missense_Mutation p.R69G 0.47 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7R-01 4 164393911 164393911 C T TKTL2 Missense_Mutation p.G326S 0.34 deleterious(0.03) probably_damaging(0.927) TCGA-4Z-AA7R-01 4 168004389 168004389 C A SPOCK3 Missense_Mutation p.E66D 0.24 tolerated(0.07) benign(0.004) TCGA-4Z-AA7R-01 4 183717855 183717855 C T TENM3 Missense_Mutation p.P2427S 0.32 deleterious(0.05) possibly_damaging(0.857) TCGA-4Z-AA7R-01 4 185320077 185320077 G A IRF2 Missense_Mutation p.S229F 0.38 deleterious(0) possibly_damaging(0.454) TCGA-4Z-AA7R-01 4 22749628 22749628 T A GBA3 Silent p.I332I 0.22 TCGA-4Z-AA7R-01 4 39116795 39116795 G A KLHL5 Missense_Mutation p.D686N 0.23 tolerated(0.38) probably_damaging(1) TCGA-4Z-AA7R-01 4 56329864 56329864 C T CLOCK Missense_Mutation p.E183K 0.54 deleterious(0.01) benign(0.199) TCGA-4Z-AA7R-01 4 69403579 69403579 G C UGT2B17 Missense_Mutation p.Q453E 0.38 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7R-01 4 75040385 75040385 G C MTHFD2L Missense_Mutation p.K102N 0.60 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 4 8456497 8456497 G T TRMT44 Missense_Mutation p.R387I 0.31 deleterious(0) possibly_damaging(0.629) TCGA-4Z-AA7R-01 4 8602924 8602924 C T CPZ Nonsense_Mutation p.Q66* 0.63 TCGA-4Z-AA7R-01 4 96199499 96199499 A G UNC5C Missense_Mutation p.F169L 0.44 deleterious(0.04) benign(0.072) TCGA-4Z-AA7R-01 5 1074713 1074713 C A SLC12A7 Nonsense_Mutation p.E681* 0.30 TCGA-4Z-AA7R-01 5 110560308 110560308 A C CAMK4 Missense_Mutation p.S43R 0.41 tolerated(0.31) benign(0.122) TCGA-4Z-AA7R-01 5 125939809 125939809 A G PHAX Missense_Mutation p.Y215C 0.33 deleterious(0.04) probably_damaging(0.931) TCGA-4Z-AA7R-01 5 132070134 132070134 C A KIF3A Missense_Mutation p.V15L 0.35 deleterious(0.03) possibly_damaging(0.77) TCGA-4Z-AA7R-01 5 132736624 132736624 C T FSTL4 Missense_Mutation p.R72Q 0.56 tolerated(0.23) benign(0.063) TCGA-4Z-AA7R-01 5 137759824 137759824 G A KDM3B Missense_Mutation p.E1345K 0.44 deleterious(0) possibly_damaging(0.739) TCGA-4Z-AA7R-01 5 139574132 139574132 C T CYSTM1 Missense_Mutation p.P28S 0.16 tolerated_low_confidence(0.63) unknown(0) TCGA-4Z-AA7R-01 5 140056942 140056942 C A HARS Missense_Mutation p.D265Y 0.30 deleterious(0) probably_damaging(0.911) TCGA-4Z-AA7R-01 5 140209601 140209601 C G PCDHA6 Missense_Mutation p.S642C 0.39 deleterious_low_confidence(0) benign(0.18) TCGA-4Z-AA7R-01 5 140223325 140223325 C G PCDHA8 Intron 0.44 TCGA-4Z-AA7R-01 5 140531462 140531462 G A PCDHB6 Missense_Mutation p.E542K 0.44 deleterious(0.01) benign(0.072) TCGA-4Z-AA7R-01 5 15500737 15500737 G A FBXL7 5'UTR 0.46 TCGA-4Z-AA7R-01 5 158204526 158204526 G T EBF1 Missense_Mutation p.R311S 0.81 deleterious(0) benign(0.426) TCGA-4Z-AA7R-01 5 159833600 159833600 C T SLU7 Missense_Mutation p.E388K 0.75 deleterious(0.02) possibly_damaging(0.783) TCGA-4Z-AA7R-01 5 168096941 168096941 C T SLIT3 Missense_Mutation p.E1395K 0.83 tolerated(0.28) benign(0.2) TCGA-4Z-AA7R-01 5 176730073 176730073 G A RAB24 Silent p.I41I 0.33 TCGA-4Z-AA7R-01 5 36253781 36253781 C G RANBP3L Missense_Mutation p.E404Q 0.39 deleterious(0.02) possibly_damaging(0.762) TCGA-4Z-AA7R-01 5 40777570 40777570 G C PRKAA1 Missense_Mutation p.F82L 0.39 tolerated(0.08) possibly_damaging(0.73) TCGA-4Z-AA7R-01 5 60448558 60448558 G A NDUFAF2 Missense_Mutation p.E96K 0.33 tolerated(0.07) possibly_damaging(0.497) TCGA-4Z-AA7R-01 5 64466497 64466497 G C ADAMTS6 Nonsense_Mutation p.S1064* 0.40 TCGA-4Z-AA7R-01 5 65084303 65084303 C T NLN Silent p.L439L 0.42 TCGA-4Z-AA7R-01 5 6737711 6737711 G A PAPD7 Missense_Mutation p.E19K 0.28 tolerated(0.18) possibly_damaging(0.784) TCGA-4Z-AA7R-01 5 6746473 6746473 G C PAPD7 Missense_Mutation p.E214D 0.13 tolerated(0.15) benign(0.155) TCGA-4Z-AA7R-01 5 71757110 71757110 C T ZNF366 Missense_Mutation p.E72K 0.40 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-4Z-AA7R-01 5 82649137 82649137 C G XRCC4 3'UTR 0.44 TCGA-4Z-AA7R-01 6 106555065 106555065 G A PRDM1 Missense_Mutation p.E728K 0.62 deleterious(0.01) benign(0.145) TCGA-4Z-AA7R-01 6 112471719 112471719 C T LAMA4 Missense_Mutation p.E723K 0.22 deleterious(0.05) benign(0.345) TCGA-4Z-AA7R-01 6 116938178 116938178 C A RSPH4A Nonsense_Mutation p.S131* 0.31 TCGA-4Z-AA7R-01 6 129794495 129794495 G A LAMA2 Silent p.L2479L 0.53 TCGA-4Z-AA7R-01 6 135239667 135239667 G C ALDH8A1 Missense_Mutation p.I450M 0.71 tolerated(0.14) possibly_damaging(0.908) TCGA-4Z-AA7R-01 6 135239742 135239742 G A ALDH8A1 Silent p.S425S 0.71 TCGA-4Z-AA7R-01 6 135239743 135239743 G A ALDH8A1 Missense_Mutation p.S425F 0.69 deleterious(0) probably_damaging(0.981) TCGA-4Z-AA7R-01 6 135239981 135239981 G C ALDH8A1 Missense_Mutation p.L346V 0.69 tolerated(0.22) benign(0.002) TCGA-4Z-AA7R-01 6 150239489 150239489 T G RAET1G Missense_Mutation p.Q221H 0.94 tolerated(0.06) benign(0.015) TCGA-4Z-AA7R-01 6 152655199 152655199 C T SYNE1 Missense_Mutation p.M4246I 0.87 benign(0.008) TCGA-4Z-AA7R-01 6 163984810 163984810 C G QKI Intron 0.42 TCGA-4Z-AA7R-01 6 168475968 168475968 C T FRMD1 Silent p.A87A 0.55 TCGA-4Z-AA7R-01 6 24467416 24467416 G A GPLD1 Missense_Mutation p.S211L 0.54 deleterious(0) possibly_damaging(0.482) TCGA-4Z-AA7R-01 6 24784350 24784350 G C GMNN Missense_Mutation p.E104Q 0.38 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 6 26056330 26056330 C G HIST1H1C Missense_Mutation p.K109N 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7R-01 6 29274755 29274755 C G OR14J1 Missense_Mutation p.L97V 0.42 tolerated(0.16) benign(0.052) TCGA-4Z-AA7R-01 6 30658707 30658707 G A NRM Silent p.F15F 0.52 TCGA-4Z-AA7R-01 6 31937352 31937352 C G SKIV2L Missense_Mutation p.Q1201E 0.42 deleterious(0.01) probably_damaging(0.955) TCGA-4Z-AA7R-01 6 31996943 31996943 G T C4B Splice_Site p.X1169_splice 0.69 TCGA-4Z-AA7R-01 6 32148102 32148102 G A RNF5 Silent p.%3D 0.32 TCGA-4Z-AA7R-01 6 32157539 32157539 C G PBX2 Missense_Mutation p.D52H 0.18 deleterious(0) probably_damaging(0.988) TCGA-4Z-AA7R-01 6 36651944 36651944 C - CDKN1A Frame_Shift_Del p.F22Lfs*9 0.30 TCGA-4Z-AA7R-01 6 38819421 38819421 G T DNAH8 Nonsense_Mutation p.G1596* 0.14 TCGA-4Z-AA7R-01 6 38891044 38891044 G C DNAH8 Intron 0.33 TCGA-4Z-AA7R-01 6 43541306 43541306 G A XPO5 Silent p.I46I 0.58 TCGA-4Z-AA7R-01 6 46803191 46803191 C T MEP1A Silent p.D663D 0.15 TCGA-4Z-AA7R-01 6 52147488 52147488 G C MCM3 Silent p.L166L 0.42 TCGA-4Z-AA7R-01 6 53516997 53516997 G A KLHL31 Missense_Mutation p.S435L 0.45 deleterious(0) possibly_damaging(0.852) TCGA-4Z-AA7R-01 6 55113594 55113594 C G HCRTR2 Missense_Mutation p.C127W 0.05 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 6 90305673 90305673 C G ANKRD6 Silent p.G53G 0.26 TCGA-4Z-AA7R-01 7 102739073 102739073 C T ARMC10 3'UTR 0.39 TCGA-4Z-AA7R-01 7 120969739 120969739 G C WNT16 Missense_Mutation p.E72Q 0.42 deleterious(0.01) benign(0.315) TCGA-4Z-AA7R-01 7 135263632 135263632 G T NUP205 Missense_Mutation p.L337F 0.29 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 7 135303235 135303235 C T NUP205 Silent p.L1283L 0.26 TCGA-4Z-AA7R-01 7 138602235 138602235 G A KIAA1549 Missense_Mutation p.R713C 0.33 tolerated(0.16) benign(0.394) TCGA-4Z-AA7R-01 7 138761139 138761139 G C ZC3HAV1 Silent p.V530V 0.23 TCGA-4Z-AA7R-01 7 139838906 139838906 C G KDM7A Missense_Mutation p.L93F 0.26 deleterious(0.02) possibly_damaging(0.497) TCGA-4Z-AA7R-01 7 142206584 142206584 C T TRBV10-2 Missense_Mutation p.E91K 0.29 tolerated(0.14) benign(0.124) TCGA-4Z-AA7R-01 7 142658089 142658089 C T KEL Missense_Mutation p.G109E 0.61 tolerated(0.08) possibly_damaging(0.651) TCGA-4Z-AA7R-01 7 151329227 151329227 G A PRKAG2 Intron 0.82 TCGA-4Z-AA7R-01 7 151860019 151860019 G - KMT2C Frame_Shift_Del p.P3548Qfs*2 0.43 TCGA-4Z-AA7R-01 7 19738146 19738146 G A TWISTNB Silent p.I270I 0.50 TCGA-4Z-AA7R-01 7 22165247 22165247 C G RAPGEF5 Silent p.L684L 0.49 TCGA-4Z-AA7R-01 7 27237853 27237853 C T HOXA13 Silent p.E377E 0.18 TCGA-4Z-AA7R-01 7 4153684 4153684 C G SDK1 Missense_Mutation p.Q1201E 0.29 tolerated(1) benign(0.008) TCGA-4Z-AA7R-01 7 64166948 64166948 C G ZNF107 Nonsense_Mutation p.S89* 0.28 TCGA-4Z-AA7R-01 7 72277732 72277732 G A TYW1B Missense_Mutation p.S217F 1.00 deleterious(0.03) benign(0.019) TCGA-4Z-AA7R-01 7 73663442 73663442 G A RFC2 Missense_Mutation p.P78S 0.82 deleterious(0) probably_damaging(0.965) TCGA-4Z-AA7R-01 7 76797112 76797112 G C CCDC146 Missense_Mutation p.E43Q 0.12 deleterious(0.04) benign(0.004) TCGA-4Z-AA7R-01 8 114449079 114449079 T G CSMD3 Missense_Mutation p.K2T 0.30 deleterious_low_confidence(0.01) benign(0.007) TCGA-4Z-AA7R-01 8 121180411 121180411 G - COL14A1 Frame_Shift_Del p.E121Kfs*27 0.15 TCGA-4Z-AA7R-01 8 126448617 126448617 C T TRIB1 Silent p.V341V 0.13 TCGA-4Z-AA7R-01 8 146157801 146157801 C T ZNF16 Silent p.R124R 0.38 TCGA-4Z-AA7R-01 8 37730608 37730608 G A RAB11FIP1 Missense_Mutation p.S571F 0.16 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7R-01 8 41791315 41791315 G A KAT6A Missense_Mutation p.H1475Y 0.23 unknown(0) TCGA-4Z-AA7R-01 8 42565569 42565569 C T CHRNB3 Missense_Mutation p.L81F 0.13 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 8 86360429 86360429 G C CA3 3'UTR 0.17 TCGA-4Z-AA7R-01 8 90936812 90936812 G A OSGIN2 Silent p.K234K 0.17 TCGA-4Z-AA7R-01 8 95686626 95686626 G A ESRP1 Missense_Mutation p.D515N 0.16 tolerated(0.12) possibly_damaging(0.756) TCGA-4Z-AA7R-01 9 107379953 107379953 G A OR13C9 Missense_Mutation p.S178L 0.43 tolerated(0.14) benign(0.006) TCGA-4Z-AA7R-01 9 115931634 115931634 G C FKBP15 Missense_Mutation p.Q1119E 0.45 tolerated_low_confidence(0.3) benign(0.123) TCGA-4Z-AA7R-01 9 115931877 115931877 G C FKBP15 Missense_Mutation p.L1038V 0.40 tolerated_low_confidence(0.22) benign(0.092) TCGA-4Z-AA7R-01 9 117047041 117047041 G A COL27A1 Missense_Mutation p.G1324E 0.93 unknown(0) TCGA-4Z-AA7R-01 9 130210817 130210817 G A RPL12 Intron 0.87 TCGA-4Z-AA7R-01 9 139740158 139740158 C G C9orf172 Missense_Mutation p.T431S 0.92 tolerated(0.42) benign(0.19) TCGA-4Z-AA7R-01 9 139749433 139749433 C G MAMDC4 Silent p.L356L 0.92 TCGA-4Z-AA7R-01 9 140991037 140991037 C G CACNA1B Silent p.V1732V 0.54 TCGA-4Z-AA7R-01 9 17795689 17795689 C T SH3GL2 Missense_Mutation p.S336L 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-4Z-AA7R-01 9 21141331 21141331 A T IFNW1 Missense_Mutation p.L80H 0.12 tolerated(0.09) probably_damaging(0.991) TCGA-4Z-AA7R-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.88 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.95 deleterious(0) probably_damaging(1) TCGA-4Z-AA7R-01 9 27524539 27524539 C G IFNK Missense_Mutation p.P69A 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-4Z-AA7R-01 9 43815937 43815937 C T CNTNAP3B Missense_Mutation p.H231Y 0.34 tolerated(0.92) benign(0.007) TCGA-4Z-AA7R-01 9 73002842 73002842 C T KLF9 Silent p.R195R 0.16 TCGA-4Z-AA7R-01 9 77435289 77435289 G C TRPM6 Missense_Mutation p.F355L 0.83 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7R-01 9 78682877 78682877 G A PCSK5 Silent p.G213G 0.37 TCGA-4Z-AA7R-01 9 95030565 95030565 C T IARS Missense_Mutation p.R441Q 0.31 tolerated(0.07) benign(0.087) TCGA-4Z-AA7R-01 9 97563230 97563230 C T C9orf3 Missense_Mutation p.S437F 0.36 deleterious(0.01) possibly_damaging(0.498) TCGA-4Z-AA7R-01 X 106016180 106016180 G T RNF128 Silent p.L174L 0.27 TCGA-4Z-AA7R-01 X 106016353 106016353 G A RNF128 Missense_Mutation p.R232Q 0.55 tolerated(0.1) probably_damaging(0.961) TCGA-4Z-AA7R-01 X 107439793 107439793 C A COL4A6 Missense_Mutation p.G285V 1.00 unknown(0) TCGA-4Z-AA7R-01 X 110463631 110463631 C G PAK3 Missense_Mutation p.L567V 0.89 deleterious(0) possibly_damaging(0.844) TCGA-4Z-AA7R-01 X 123196802 123196802 C G STAG2 Missense_Mutation p.I563M 0.89 tolerated(0.11) benign(0.015) TCGA-4Z-AA7R-01 X 129629730 129629730 C G RP1-274L7.1 Intron 0.96 TCGA-4Z-AA7R-01 X 152937616 152937616 G A PNCK Silent p.H163H 0.44 TCGA-4Z-AA7R-01 X 18278351 18278351 C T SCML2 Missense_Mutation p.D337N 0.92 tolerated(0.17) benign(0.002) TCGA-4Z-AA7R-01 X 18278394 18278394 C A SCML2 Silent p.V322V 0.92 TCGA-4Z-AA7R-01 X 41027317 41027317 G A USP9X Missense_Mutation p.D828N 0.98 tolerated(0.11) probably_damaging(0.98) TCGA-4Z-AA7R-01 X 49837206 49837206 C T CLCN5 Silent p.S126S 0.11 TCGA-4Z-AA7R-01 X 68382314 68382314 G C PJA1 Silent p.V256V 0.36 TCGA-4Z-AA7S-01 10 108434828 108434828 C G SORCS1 Missense_Mutation p.G640A 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-4Z-AA7S-01 10 27459431 27459431 G A MASTL Missense_Mutation p.D515N 0.16 tolerated(0.28) possibly_damaging(0.694) TCGA-4Z-AA7S-01 10 48390079 48390079 G A RBP3 Missense_Mutation p.R267W 0.10 deleterious(0) probably_damaging(0.932) TCGA-4Z-AA7S-01 10 75557632 75557632 A C ZSWIM8 Silent p.T1252T 0.20 TCGA-4Z-AA7S-01 11 4936212 4936212 G A OR51G2 Missense_Mutation p.R228C 0.18 deleterious(0.02) benign(0.013) TCGA-4Z-AA7S-01 11 56086503 56086503 G A OR8K3 Missense_Mutation p.G241R 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-4Z-AA7S-01 11 56237513 56237513 C T OR5M3 Missense_Mutation p.S154N 0.22 deleterious(0.01) benign(0.208) TCGA-4Z-AA7S-01 11 62571433 62571433 C T NXF1 Missense_Mutation p.V16I 0.31 tolerated(0.17) benign(0.079) TCGA-4Z-AA7S-01 11 68029170 68029172 CTT - C11orf24 In_Frame_Del p.K431del 0.21 TCGA-4Z-AA7S-01 12 21448624 21448624 C A SLCO1A2 Missense_Mutation p.W393L 0.14 tolerated(0.64) benign(0.232) TCGA-4Z-AA7S-01 12 40671785 40671785 G T LRRK2 Missense_Mutation p.M679I 0.22 tolerated(0.06) benign(0.003) TCGA-4Z-AA7S-01 12 56119365 56119365 T C CD63 Missense_Mutation p.S233G 0.91 tolerated(0.1) benign(0.013) TCGA-4Z-AA7S-01 12 57843705 57843705 C A INHBC Missense_Mutation p.T320K 0.53 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7S-01 13 107145543 107145543 C T EFNB2 Missense_Mutation p.G283S 0.17 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7S-01 14 100793604 100793604 G A SLC25A47 Missense_Mutation p.R75H 0.21 tolerated(0.09) benign(0.022) TCGA-4Z-AA7S-01 14 21771644 21771644 G T RPGRIP1 Missense_Mutation p.D248Y 0.20 deleterious(0) possibly_damaging(0.906) TCGA-4Z-AA7S-01 14 21969072 21969072 G A METTL3 Nonsense_Mutation p.R367* 0.14 TCGA-4Z-AA7S-01 14 50117071 50117071 C A POLE2 Missense_Mutation p.R470I 0.47 deleterious(0.02) probably_damaging(0.974) TCGA-4Z-AA7S-01 14 69445798 69445798 G A ACTN1 5'UTR 0.24 TCGA-4Z-AA7S-01 14 92343870 92343870 C - FBLN5 Frame_Shift_Del p.I383Sfs*23 0.22 TCGA-4Z-AA7S-01 15 86808016 86808016 C A AGBL1 Missense_Mutation p.H492Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7S-01 15 89449896 89449896 G A MFGE8 Silent p.H167H 0.19 TCGA-4Z-AA7S-01 15 89745001 89745001 G A ABHD2 3'UTR 0.47 TCGA-4Z-AA7S-01 16 1004649 1004649 C A LMF1 Missense_Mutation p.A71S 0.11 deleterious(0.03) benign(0.4) TCGA-4Z-AA7S-01 16 1004650 1004650 C A LMF1 Silent p.V70V 0.11 TCGA-4Z-AA7S-01 16 1536306 1536306 G A PTX4 Silent p.D352D 0.22 TCGA-4Z-AA7S-01 16 21049196 21049196 C T DNAH3 Missense_Mutation p.A1613T 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-4Z-AA7S-01 16 48226459 48226459 G A ABCC11 Missense_Mutation p.T893M 0.16 deleterious(0) probably_damaging(0.927) TCGA-4Z-AA7S-01 17 1375308 1375308 G A MYO1C Silent p.D638D 0.45 TCGA-4Z-AA7S-01 17 40646475 40646475 A G ATP6V0A1 Missense_Mutation p.Q440R 0.21 tolerated(0.27) possibly_damaging(0.731) TCGA-4Z-AA7S-01 17 61908424 61908424 C A PSMC5 Silent p.V236V 0.14 TCGA-4Z-AA7S-01 17 80545111 80545111 A T FOXK2 Silent p.A583A 0.22 TCGA-4Z-AA7S-01 18 31325943 31325943 C G ASXL3 Missense_Mutation p.P2044R 0.36 possibly_damaging(0.729) TCGA-4Z-AA7S-01 18 61597343 61597343 C T SERPINB10 Silent p.N185N 0.24 TCGA-4Z-AA7S-01 19 1789427 1789427 G A ATP8B3 Silent p.V926V 0.36 TCGA-4Z-AA7S-01 1 155015291 155015291 C T DCST1 Missense_Mutation p.R325C 0.26 deleterious(0.05) benign(0.339) TCGA-4Z-AA7S-01 1 158746753 158746753 C A OR6N2 Missense_Mutation p.V225L 0.13 deleterious(0.04) possibly_damaging(0.702) TCGA-4Z-AA7S-01 1 161127972 161127972 T A UFC1 Missense_Mutation p.F132I 0.29 deleterious(0) probably_damaging(1) TCGA-4Z-AA7S-01 1 169267969 169267969 A G NME7 Missense_Mutation p.I158T 0.19 deleterious(0.04) benign(0.112) TCGA-4Z-AA7S-01 1 201382240 201382240 G A TNNI1 Missense_Mutation p.R67W 0.25 deleterious(0) probably_damaging(0.975) TCGA-4Z-AA7S-01 1 228582549 228582549 C T TRIM11 Missense_Mutation p.D422N 0.21 tolerated(0.09) possibly_damaging(0.842) TCGA-4Z-AA7S-01 1 237789061 237789061 G A RYR2 Silent p.K2041K 0.31 TCGA-4Z-AA7S-01 1 45101721 45101721 C T RNF220 Missense_Mutation p.A338V 0.20 tolerated(0.34) benign(0.001) TCGA-4Z-AA7S-01 1 57351757 57351757 G A C8A Missense_Mutation p.G338D 0.20 deleterious(0) probably_damaging(1) TCGA-4Z-AA7S-01 1 70489002 70489002 C A LRRC7 Missense_Mutation p.T542N 0.18 tolerated(0.16) benign(0) TCGA-4Z-AA7S-01 1 71873086 71873086 C A NEGR1 3'UTR 0.13 TCGA-4Z-AA7S-01 20 43058372 43058372 C T HNF4A 3'UTR 0.12 TCGA-4Z-AA7S-01 20 48600819 48600819 G A SNAI1 Missense_Mutation p.V181I 0.15 tolerated(0.16) possibly_damaging(0.753) TCGA-4Z-AA7S-01 22 22869221 22869221 G T ZNF280A Missense_Mutation p.A245E 0.23 tolerated(1) benign(0.004) TCGA-4Z-AA7S-01 22 38121258 38121258 C T TRIOBP Missense_Mutation p.R899C 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4Z-AA7S-01 22 39883623 39883623 G A MGAT3 Missense_Mutation p.E91K 0.19 tolerated_low_confidence(0.63) benign(0.163) TCGA-4Z-AA7S-01 22 50523212 50523212 C T MLC1 Silent p.S40S 0.17 TCGA-4Z-AA7S-01 2 121747283 121747283 C T GLI2 Nonsense_Mutation p.Q1265* 0.35 TCGA-4Z-AA7S-01 2 128335737 128335737 C T MYO7B Silent p.N293N 0.11 TCGA-4Z-AA7S-01 2 192700729 192700729 C T SDPR Missense_Mutation p.A400T 0.31 tolerated_low_confidence(0.57) benign(0.002) TCGA-4Z-AA7S-01 2 216248846 216248846 G A FN1 Silent p.S1597S 0.25 TCGA-4Z-AA7S-01 3 190345171 190345171 G A IL1RAP Missense_Mutation p.E279K 0.23 deleterious(0.02) probably_damaging(0.949) TCGA-4Z-AA7S-01 3 197430482 197430482 C A KIAA0226 Silent p.L169L 0.08 TCGA-4Z-AA7S-01 3 6903441 6903441 C T GRM7 Silent p.F122F 0.21 TCGA-4Z-AA7S-01 3 97806059 97806059 G T OR5AC2 Missense_Mutation p.V15F 0.18 tolerated(0.05) benign(0.049) TCGA-4Z-AA7S-01 4 114170943 114170943 T A ANK2 Nonsense_Mutation p.C305* 0.50 TCGA-4Z-AA7S-01 4 184431500 184431500 A G ING2 Missense_Mutation p.K80E 0.21 tolerated(0.06) possibly_damaging(0.86) TCGA-4Z-AA7S-01 4 83839669 83839669 G A THAP9 Silent p.L768L 0.26 TCGA-4Z-AA7S-01 5 137727093 137727093 G A KDM3B Missense_Mutation p.R591Q 0.14 tolerated_low_confidence(0.2) benign(0.416) TCGA-4Z-AA7S-01 5 140595043 140595043 G A PCDHB13 Missense_Mutation p.A450T 0.22 tolerated_low_confidence(0.34) benign(0) TCGA-4Z-AA7S-01 5 161300147 161300147 C T GABRA1 Missense_Mutation p.R94C 0.43 deleterious(0) possibly_damaging(0.871) TCGA-4Z-AA7S-01 6 101248192 101248192 C T ASCC3 Missense_Mutation p.E371K 0.15 tolerated(0.24) benign(0.009) TCGA-4Z-AA7S-01 6 12124092 12124092 A G HIVEP1 Missense_Mutation p.N1355S 0.18 tolerated(0.88) benign(0.003) TCGA-4Z-AA7S-01 6 144768799 144768799 A G UTRN Missense_Mutation p.Q595R 0.16 deleterious(0.02) benign(0.317) TCGA-4Z-AA7S-01 6 27778038 27778038 A G HIST1H3H Missense_Mutation p.I63V 0.12 deleterious_low_confidence(0) benign(0.029) TCGA-4Z-AA7S-01 6 36652093 36652094 - C CDKN1A Frame_Shift_Ins p.L73Pfs*16 0.23 TCGA-4Z-AA7S-01 6 52762620 52762620 C T GSTA3 Intron 0.20 TCGA-4Z-AA7S-01 7 100681032 100681032 C T MUC17 Missense_Mutation p.T2112M 0.15 unknown(0) TCGA-4Z-AA7S-01 7 103197509 103197509 C T RELN Silent p.T1904T 0.47 TCGA-4Z-AA7S-01 8 105441799 105441799 G A DPYS Silent p.P308P 0.25 TCGA-4Z-AA7S-01 8 2088811 2088811 T G MYOM2 Splice_Site p.X1322_splice 0.17 TCGA-4Z-AA7S-01 8 22481490 22481490 G A BIN3 Missense_Mutation p.R185C 0.17 deleterious(0.01) possibly_damaging(0.72) TCGA-4Z-AA7S-01 8 23115870 23115870 C T CHMP7 Missense_Mutation p.R290W 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-4Z-AA7S-01 8 72755827 72755827 G A RP11-383H13.1 Missense_Mutation p.R64H 0.19 unknown(0) TCGA-4Z-AA7S-01 8 77763461 77763461 G A ZFHX4 Missense_Mutation p.R1435H 0.26 possibly_damaging(0.715) TCGA-4Z-AA7S-01 9 18906820 18906820 C T ADAMTSL1 Missense_Mutation p.R1698C 0.19 deleterious(0) possibly_damaging(0.889) TCGA-4Z-AA7W-01 10 120802240 120802240 C G EIF3A Missense_Mutation p.R931T 0.12 deleterious(0.03) probably_damaging(0.942) TCGA-4Z-AA7W-01 10 12123607 12123607 G - DHTKD1 Frame_Shift_Del p.G98Dfs*9 0.12 TCGA-4Z-AA7W-01 10 128192997 128192997 G A C10orf90 Nonsense_Mutation p.Q258* 0.26 TCGA-4Z-AA7W-01 10 13231031 13231031 G C MCM10 Missense_Mutation p.D457H 0.12 deleterious(0) possibly_damaging(0.808) TCGA-4Z-AA7W-01 10 135085413 135085413 C T ADAM8 Missense_Mutation p.E335K 0.11 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 10 16916428 16916428 C T CUBN Missense_Mutation p.D3061N 0.10 tolerated(1) benign(0.065) TCGA-4Z-AA7W-01 10 23408303 23408303 G C MSRB2 Missense_Mutation p.D123H 0.10 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 10 25883287 25883287 G C GPR158 Missense_Mutation p.L653F 0.11 deleterious(0.02) probably_damaging(0.95) TCGA-4Z-AA7W-01 10 27415709 27415709 C A YME1L1 Nonsense_Mutation p.E346* 0.12 TCGA-4Z-AA7W-01 10 32863398 32863398 A C CCDC7 3'UTR 0.10 TCGA-4Z-AA7W-01 10 46962075 46962075 G C SYT15 Nonsense_Mutation p.Y387* 0.14 TCGA-4Z-AA7W-01 10 50959879 50959879 G A OGDHL Missense_Mutation p.S248F 0.16 deleterious(0) probably_damaging(0.964) TCGA-4Z-AA7W-01 10 70768675 70768675 G A KIAA1279 Missense_Mutation p.E290K 0.18 tolerated(0.39) benign(0.438) TCGA-4Z-AA7W-01 10 72358003 72358003 C T PRF1 Missense_Mutation p.D492N 0.08 deleterious(0.02) probably_damaging(0.972) TCGA-4Z-AA7W-01 10 78880748 78880748 C T KCNMA1 Silent p.L289L 0.16 TCGA-4Z-AA7W-01 10 79793539 79793539 C T RPS24 5'UTR 0.15 TCGA-4Z-AA7W-01 10 88451738 88451738 G A LDB3 Missense_Mutation p.E327K 0.11 tolerated(0.19) possibly_damaging(0.833) TCGA-4Z-AA7W-01 10 88469776 88469776 T G LDB3 Silent p.T405T 0.10 TCGA-4Z-AA7W-01 10 90701064 90701064 G C ACTA2 Missense_Mutation p.L180V 0.15 tolerated_low_confidence(0.07) benign(0.277) TCGA-4Z-AA7W-01 10 99019306 99019306 G A ARHGAP19 Silent p.L231L 0.15 TCGA-4Z-AA7W-01 11 10785069 10785069 G A CTR9 Missense_Mutation p.R314K 0.07 deleterious(0.01) benign(0.187) TCGA-4Z-AA7W-01 11 118344287 118344287 C T KMT2A Nonsense_Mutation p.Q805* 0.44 TCGA-4Z-AA7W-01 11 120980087 120980087 G A TECTA Silent p.L122L 0.08 TCGA-4Z-AA7W-01 11 121986320 121986320 G C BLID Missense_Mutation p.S104C 0.32 tolerated_low_confidence(0.05) benign(0.202) TCGA-4Z-AA7W-01 11 19184869 19184869 C G ZDHHC13 Missense_Mutation p.F376L 0.13 tolerated(0.74) benign(0.001) TCGA-4Z-AA7W-01 11 20805300 20805300 T G NELL1 Missense_Mutation p.F87V 0.12 deleterious(0) possibly_damaging(0.742) TCGA-4Z-AA7W-01 11 21596525 21596525 G C NELL1 Missense_Mutation p.R797T 0.08 deleterious(0.04) benign(0.002) TCGA-4Z-AA7W-01 11 27395160 27395160 C T LGR4 Silent p.L439L 0.14 TCGA-4Z-AA7W-01 11 3114785 3114785 C G OSBPL5 Missense_Mutation p.E640Q 0.21 deleterious(0.03) probably_damaging(0.925) TCGA-4Z-AA7W-01 11 3681334 3681334 G A ART1 Silent p.V195V 0.31 TCGA-4Z-AA7W-01 11 45241211 45241211 C T PRDM11 Silent p.I215I 0.09 TCGA-4Z-AA7W-01 11 47283284 47283284 G A NR1H3 Intron 0.12 TCGA-4Z-AA7W-01 11 47591332 47591332 G A PTPMT1 Silent p.Q112Q 0.13 TCGA-4Z-AA7W-01 11 4929021 4929021 T A OR51A7 Missense_Mutation p.V141D 0.24 deleterious(0) probably_damaging(0.961) TCGA-4Z-AA7W-01 11 5565995 5565995 G C OR52H1 Silent p.V253V 0.15 TCGA-4Z-AA7W-01 11 56380057 56380057 T G OR5M1 Missense_Mutation p.K308Q 0.19 tolerated(0.14) benign(0.06) TCGA-4Z-AA7W-01 11 57077782 57077782 C T TNKS1BP1 Missense_Mutation p.M801I 0.09 tolerated(0.58) benign(0) TCGA-4Z-AA7W-01 11 57413806 57413806 G C YPEL4 Missense_Mutation p.F86L 0.14 deleterious(0.03) possibly_damaging(0.515) TCGA-4Z-AA7W-01 11 59611386 59611386 G C GIF Silent p.L74L 0.09 TCGA-4Z-AA7W-01 11 59828763 59828763 C T MS4A3 Nonsense_Mutation p.Q44* 0.12 TCGA-4Z-AA7W-01 11 59828784 59828784 C G MS4A3 Missense_Mutation p.L51V 0.12 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7W-01 11 60780956 60780956 C T CD6 Silent p.P404P 0.20 TCGA-4Z-AA7W-01 11 61495696 61495696 C T DAGLA Silent p.I236I 0.15 TCGA-4Z-AA7W-01 11 62301425 62301425 C T AHNAK Missense_Mutation p.R155K 0.14 probably_damaging(0.992) TCGA-4Z-AA7W-01 11 62417402 62417402 G C INTS5 Silent p.L50L 0.12 TCGA-4Z-AA7W-01 11 62430453 62430453 C T C11orf48 3'UTR 0.20 TCGA-4Z-AA7W-01 11 62744824 62744824 C G SLC22A6 Missense_Mutation p.R466P 0.16 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA7W-01 11 62747203 62747203 C A SLC22A6 Intron 0.12 TCGA-4Z-AA7W-01 11 65623443 65623443 T C CFL1 Missense_Mutation p.K92E 0.16 deleterious(0) possibly_damaging(0.887) TCGA-4Z-AA7W-01 11 66131895 66131895 G C SLC29A2 Missense_Mutation p.P354A 0.15 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 11 6638065 6638065 G C TPP1 Nonsense_Mutation p.S238* 0.09 TCGA-4Z-AA7W-01 11 6646831 6646831 C G DCHS1 Missense_Mutation p.E2287Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 11 67766695 67766695 G C UNC93B1 Missense_Mutation p.S212C 0.10 tolerated(0.13) possibly_damaging(0.849) TCGA-4Z-AA7W-01 11 69462782 69462782 C T CCND1 Missense_Mutation p.P199S 0.29 deleterious(0.04) probably_damaging(1) TCGA-4Z-AA7W-01 11 74914038 74914038 G T SLCO2B1 Intron 0.10 TCGA-4Z-AA7W-01 11 75160076 75160076 C T GDPD5 Silent p.E220E 0.26 TCGA-4Z-AA7W-01 11 82550366 82550366 C T PRCP Silent p.V362V 0.11 TCGA-4Z-AA7W-01 11 86663230 86663230 G C FZD4 Missense_Mutation p.Q190E 0.13 tolerated(0.2) benign(0.01) TCGA-4Z-AA7W-01 11 93844987 93844987 G A HEPHL1 Missense_Mutation p.R1136K 0.15 tolerated_low_confidence(0.44) benign(0.001) TCGA-4Z-AA7W-01 11 93845003 93845003 G C HEPHL1 Missense_Mutation p.M1141I 0.15 deleterious_low_confidence(0.04) benign(0) TCGA-4Z-AA7W-01 11 9450105 9450105 C T IPO7 Nonsense_Mutation p.Q452* 0.07 TCGA-4Z-AA7W-01 11 992641 992641 A C AP2A2 Missense_Mutation p.N470H 0.16 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7W-01 12 101477459 101477459 G A ANO4 Missense_Mutation p.E432K 0.31 tolerated(0.07) possibly_damaging(0.757) TCGA-4Z-AA7W-01 12 10541410 10541410 C G KLRK1 5'UTR 0.14 TCGA-4Z-AA7W-01 12 107109286 107109286 G C RFX4 Missense_Mutation p.D377H 0.33 tolerated(0.06) benign(0.003) TCGA-4Z-AA7W-01 12 107177818 107177818 G C RIC8B Missense_Mutation p.R43T 0.25 deleterious(0) benign(0.205) TCGA-4Z-AA7W-01 12 109702956 109702956 G C ACACB Missense_Mutation p.W2328C 0.13 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7W-01 12 112147466 112147466 G C ACAD10 Missense_Mutation p.R223T 0.36 tolerated(0.13) benign(0.009) TCGA-4Z-AA7W-01 12 112451348 112451348 C G ERP29 Missense_Mutation p.P27A 0.16 tolerated(0.99) probably_damaging(0.971) TCGA-4Z-AA7W-01 12 118504287 118504287 G C VSIG10 3'UTR 0.22 TCGA-4Z-AA7W-01 12 120158345 120158345 G C CIT Missense_Mutation p.Q1260E 0.14 deleterious(0) probably_damaging(0.986) TCGA-4Z-AA7W-01 12 122353813 122353813 C T PSMD9 Missense_Mutation p.L203F 0.16 deleterious(0.01) benign(0.443) TCGA-4Z-AA7W-01 12 123072374 123072374 C T KNTC1 Missense_Mutation p.L1283F 0.50 tolerated(0.11) possibly_damaging(0.725) TCGA-4Z-AA7W-01 12 130839546 130839546 C T PIWIL1 Missense_Mutation p.H429Y 0.44 deleterious(0) benign(0.167) TCGA-4Z-AA7W-01 12 13243743 13243743 A G GSG1 Missense_Mutation p.S20P 0.32 tolerated(1) benign(0.001) TCGA-4Z-AA7W-01 12 133327436 133327436 C G ANKLE2 Splice_Site p.X214_splice 0.15 TCGA-4Z-AA7W-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.22 TCGA-4Z-AA7W-01 12 21207467 21207467 G C SLCO1B7 Missense_Mutation p.D480H 0.22 deleterious(0.03) benign(0.189) TCGA-4Z-AA7W-01 12 25002810 25002810 G C BCAT1 Nonsense_Mutation p.S207* 0.16 TCGA-4Z-AA7W-01 12 26639286 26639286 A G ITPR2 Silent p.D1854D 0.07 TCGA-4Z-AA7W-01 12 27554500 27554500 C G ARNTL2 Missense_Mutation p.F437L 0.06 tolerated(0.07) probably_damaging(1) TCGA-4Z-AA7W-01 12 2968775 2968775 C G FOXM1 Missense_Mutation p.E479Q 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-4Z-AA7W-01 12 29920832 29920832 G A TMTC1 Missense_Mutation p.A160V 0.11 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 12 32955354 32955354 G A PKP2 Missense_Mutation p.S761F 0.11 deleterious(0.04) benign(0.354) TCGA-4Z-AA7W-01 12 33031336 33031336 G A PKP2 Missense_Mutation p.H160Y 0.10 tolerated(1) benign(0.001) TCGA-4Z-AA7W-01 12 41337897 41337897 C T CNTN1 Silent p.L536L 0.34 TCGA-4Z-AA7W-01 12 41966399 41966399 C G PDZRN4 Silent p.L606L 0.16 TCGA-4Z-AA7W-01 12 4634670 4634670 G A C12orf4 Nonsense_Mutation p.Q196* 0.13 TCGA-4Z-AA7W-01 12 46756132 46756132 G T SLC38A2 Missense_Mutation p.L453I 0.33 deleterious(0.02) possibly_damaging(0.838) TCGA-4Z-AA7W-01 12 46758181 46758181 G T SLC38A2 Missense_Mutation p.F288L 0.37 tolerated(0.44) benign(0.008) TCGA-4Z-AA7W-01 12 4700372 4700372 C T DYRK4 Missense_Mutation p.S9L 0.34 tolerated(0.09) benign(0.01) TCGA-4Z-AA7W-01 12 48110279 48110279 G A ENDOU Silent p.L185L 0.21 TCGA-4Z-AA7W-01 12 48533065 48533065 C T PFKM Intron 0.13 TCGA-4Z-AA7W-01 12 49717639 49717639 G C TROAP Missense_Mutation p.Q52H 0.35 deleterious(0) probably_damaging(0.983) TCGA-4Z-AA7W-01 12 49721000 49721000 C T TROAP Missense_Mutation p.L260F 0.17 tolerated(0.08) benign(0.1) TCGA-4Z-AA7W-01 12 50027715 50027715 C G PRPF40B Missense_Mutation p.Q218E 0.09 tolerated(1) benign(0.041) TCGA-4Z-AA7W-01 12 50036060 50036060 G A PRPF40B Missense_Mutation p.E643K 0.10 deleterious(0) probably_damaging(0.968) TCGA-4Z-AA7W-01 12 51632616 51632616 G A DAZAP2 5'UTR 0.27 TCGA-4Z-AA7W-01 12 51852408 51852408 G A SLC4A8 Missense_Mutation p.E277K 0.34 tolerated(0.1) benign(0.254) TCGA-4Z-AA7W-01 12 54675691 54675691 G C HNRNPA1 Missense_Mutation p.R82T 0.27 deleterious(0.01) possibly_damaging(0.747) TCGA-4Z-AA7W-01 12 54675884 54675884 G C HNRNPA1 Missense_Mutation p.R97T 0.22 deleterious(0.01) benign(0.218) TCGA-4Z-AA7W-01 12 54744404 54744404 C A COPZ1 3'UTR 0.30 TCGA-4Z-AA7W-01 12 56188160 56188160 G C SARNP Missense_Mutation p.S130C 0.16 deleterious(0.01) benign(0.219) TCGA-4Z-AA7W-01 12 56335779 56335779 C T DGKA Intron 0.27 TCGA-4Z-AA7W-01 12 57003708 57003708 G A BAZ2A Missense_Mutation p.S637L 0.54 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7W-01 12 57974944 57974944 C G KIF5A Missense_Mutation p.S915C 0.22 deleterious(0) benign(0.319) TCGA-4Z-AA7W-01 12 58180834 58180834 G C TSFM Missense_Mutation p.E124D 0.18 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 12 64588242 64588242 G A C12orf66 Silent p.L240L 0.32 TCGA-4Z-AA7W-01 12 64875665 64875665 G C TBK1 Missense_Mutation p.E286Q 0.10 deleterious(0) possibly_damaging(0.874) TCGA-4Z-AA7W-01 12 6692298 6692298 G T CHD4 Intron 0.14 TCGA-4Z-AA7W-01 12 6709469 6709469 C T CHD4 Missense_Mutation p.D386N 0.05 deleterious(0) benign(0.073) TCGA-4Z-AA7W-01 12 6878820 6878820 C A PTMS Silent p.R33R 0.10 TCGA-4Z-AA7W-01 12 69986852 69986852 C A CCT2 Missense_Mutation p.L283I 0.09 tolerated(0.49) benign(0.024) TCGA-4Z-AA7W-01 12 95451379 95451379 G A NR2C1 Missense_Mutation p.H245Y 0.45 deleterious(0.03) benign(0.125) TCGA-4Z-AA7W-01 12 95889827 95889827 G A METAP2 Missense_Mutation p.D274N 0.25 tolerated(0.06) benign(0.146) TCGA-4Z-AA7W-01 12 99020352 99020352 C G IKBIP Missense_Mutation p.E164Q 0.34 tolerated(0.29) benign(0.43) TCGA-4Z-AA7W-01 13 102379093 102379093 G C FGF14 Missense_Mutation p.S164C 0.25 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 13 102568812 102568812 G A FGF14 Intron 0.08 TCGA-4Z-AA7W-01 13 103450864 103450864 G A KDELC1 Nonsense_Mutation p.Q53* 0.45 TCGA-4Z-AA7W-01 13 32910439 32910439 G C BRCA2 Missense_Mutation p.Q649H 0.31 deleterious(0.04) benign(0.178) TCGA-4Z-AA7W-01 13 32910968 32910968 G T BRCA2 Nonsense_Mutation p.E826* 0.18 TCGA-4Z-AA7W-01 13 32910986 32910986 G A BRCA2 Missense_Mutation p.E832K 0.16 tolerated(0.16) benign(0.169) TCGA-4Z-AA7W-01 13 32911181 32911181 G A BRCA2 Missense_Mutation p.E897K 0.21 tolerated(0.26) benign(0.12) TCGA-4Z-AA7W-01 13 32911868 32911868 G A BRCA2 Missense_Mutation p.E1126K 0.33 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 13 40254132 40254132 T C COG6 Missense_Mutation p.M215T 0.23 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7W-01 13 47011841 47011841 C T PPP1R2P4 RNA 0.45 TCGA-4Z-AA7W-01 13 58207745 58207745 C T PCDH17 Silent p.S355S 0.34 TCGA-4Z-AA7W-01 13 76140943 76140943 G C UCHL3 Missense_Mutation p.G99A 0.22 tolerated(0.95) possibly_damaging(0.613) TCGA-4Z-AA7W-01 13 96329422 96329422 C G DNAJC3 5'UTR 0.33 TCGA-4Z-AA7W-01 14 102551677 102551677 C T HSP90AA1 Silent p.V329V 0.09 TCGA-4Z-AA7W-01 14 105409097 105409097 G A AHNAK2 Missense_Mutation p.L4231F 0.34 possibly_damaging(0.477) TCGA-4Z-AA7W-01 14 105418242 105418242 G C AHNAK2 Missense_Mutation p.I1182M 0.17 probably_damaging(0.981) TCGA-4Z-AA7W-01 14 106054182 106054182 G A IGHA2 Nonsense_Mutation p.R113* 0.21 TCGA-4Z-AA7W-01 14 106791099 106791099 C T IGHV3-30 Missense_Mutation p.R86Q 0.05 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-4Z-AA7W-01 14 20767487 20767487 G C TTC5 Missense_Mutation p.Q173E 0.15 tolerated(0.26) benign(0.017) TCGA-4Z-AA7W-01 14 21024679 21024679 C A RNASE9 Missense_Mutation p.D189Y 0.27 deleterious(0) probably_damaging(0.975) TCGA-4Z-AA7W-01 14 22671189 22671189 G C TRAV26-2 Missense_Mutation p.R85T 0.36 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7W-01 14 23746199 23746199 G T HOMEZ Missense_Mutation p.P80T 0.30 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 14 24905653 24905653 G A KHNYN Missense_Mutation p.R582Q 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA7W-01 14 50218470 50218470 C G KLHDC1 Missense_Mutation p.Q401E 0.15 tolerated_low_confidence(0.08) benign(0.01) TCGA-4Z-AA7W-01 14 51190285 51190285 C A NIN 3'Flank 0.20 TCGA-4Z-AA7W-01 14 53173924 53173924 G C PSMC6 Missense_Mutation p.R10T 0.17 tolerated_low_confidence(0.14) benign(0.002) TCGA-4Z-AA7W-01 14 55236912 55236912 G C SAMD4A Missense_Mutation p.D563H 0.10 deleterious(0) possibly_damaging(0.681) TCGA-4Z-AA7W-01 14 58056069 58056069 A C SLC35F4 Missense_Mutation p.I187S 0.16 tolerated(0.29) possibly_damaging(0.893) TCGA-4Z-AA7W-01 14 61115758 61115758 G C SIX1 Silent p.L50L 0.15 TCGA-4Z-AA7W-01 14 75375618 75375618 C T RPS6KL1 Missense_Mutation p.E460K 0.17 deleterious(0.04) possibly_damaging(0.853) TCGA-4Z-AA7W-01 14 76967199 76967199 G C ESRRB 3'UTR 0.20 TCGA-4Z-AA7W-01 14 77857488 77857488 G C SAMD15 Missense_Mutation p.L642F 0.16 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7W-01 14 77894753 77894753 G C VIPAS39 Nonsense_Mutation p.S474* 0.09 TCGA-4Z-AA7W-01 14 92264744 92264744 C G TC2N Splice_Site p.X213_splice 0.08 TCGA-4Z-AA7W-01 14 94849028 94849028 C T SERPINA1 Missense_Mutation p.D183N 0.10 tolerated(0.29) benign(0.005) TCGA-4Z-AA7W-01 14 95234934 95234934 G A GSC Missense_Mutation p.S223L 0.21 tolerated(0.06) probably_damaging(0.991) TCGA-4Z-AA7W-01 14 99641837 99641837 G A BCL11B Missense_Mutation p.R446W 0.14 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 15 28090152 28090152 C G OCA2 Silent p.G795G 0.17 TCGA-4Z-AA7W-01 15 41482164 41482164 C G EXD1 Missense_Mutation p.G285R 0.15 deleterious(0.05) benign(0.077) TCGA-4Z-AA7W-01 15 45050939 45050939 G C TRIM69 Missense_Mutation p.E234Q 0.22 tolerated(0.31) benign(0.011) TCGA-4Z-AA7W-01 15 49935752 49935752 G T DTWD1 Nonsense_Mutation p.E298* 0.12 TCGA-4Z-AA7W-01 15 65152159 65152159 G A AC069368.3 Missense_Mutation p.E116K 0.12 tolerated(0.19) possibly_damaging(0.759) TCGA-4Z-AA7W-01 15 67473727 67473727 C T SMAD3 Silent p.F269F 0.53 TCGA-4Z-AA7W-01 15 67479782 67479782 C T SMAD3 Silent p.V363V 0.39 TCGA-4Z-AA7W-01 15 73536800 73536800 G C NEO1 Missense_Mutation p.E523Q 0.17 tolerated(0.14) probably_damaging(0.934) TCGA-4Z-AA7W-01 15 75801291 75801291 G C PTPN9 Missense_Mutation p.I202M 0.06 deleterious(0) possibly_damaging(0.629) TCGA-4Z-AA7W-01 15 79284034 79284034 C G RASGRF1 Missense_Mutation p.E1060Q 0.13 tolerated(0.07) benign(0.051) TCGA-4Z-AA7W-01 15 81213418 81213418 C G KIAA1199 Missense_Mutation p.I683M 0.15 deleterious(0) possibly_damaging(0.474) TCGA-4Z-AA7W-01 15 83499431 83499431 G C WHAMM Missense_Mutation p.Q574H 0.11 deleterious(0.03) benign(0.01) TCGA-4Z-AA7W-01 15 89400269 89400269 G C ACAN Missense_Mutation p.E1485Q 0.09 tolerated(0.4) possibly_damaging(0.756) TCGA-4Z-AA7W-01 15 91503149 91503149 C G RCCD1 Missense_Mutation p.I233M 0.13 deleterious(0.01) benign(0.366) TCGA-4Z-AA7W-01 15 99459206 99459206 C T IGF1R Silent p.P614P 0.19 TCGA-4Z-AA7W-01 16 10850575 10850575 C A NUBP1 Nonsense_Mutation p.S130* 0.07 TCGA-4Z-AA7W-01 16 15023243 15023243 C T RP11-958N24.1 RNA 0.21 TCGA-4Z-AA7W-01 16 15180012 15180012 C G RRN3 Missense_Mutation p.S149T 0.11 tolerated(0.32) benign(0.36) TCGA-4Z-AA7W-01 16 2203392 2203392 G A RAB26 Silent p.E247E 0.12 TCGA-4Z-AA7W-01 16 24570899 24570899 G C RBBP6 Missense_Mutation p.D250H 0.25 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-4Z-AA7W-01 16 2813027 2813027 A G SRRM2 Missense_Mutation p.Q833R 0.20 unknown(0) TCGA-4Z-AA7W-01 16 30495200 30495200 C T ITGAL Missense_Mutation p.L259F 0.26 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7W-01 16 30594869 30594869 G C ZNF785 Intron 0.25 TCGA-4Z-AA7W-01 16 3296540 3296540 C T MEFV Missense_Mutation p.G532E 0.31 deleterious(0.01) benign(0.303) TCGA-4Z-AA7W-01 16 58538528 58538528 G A NDRG4 Missense_Mutation p.G168E 0.06 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 16 67159898 67159898 C G C16orf70 Missense_Mutation p.Q62E 0.10 tolerated(0.1) benign(0.221) TCGA-4Z-AA7W-01 16 68009902 68009902 C A DPEP3 Silent p.V436V 0.11 TCGA-4Z-AA7W-01 16 69942718 69942718 C G WWP2 Silent p.T323T 0.25 TCGA-4Z-AA7W-01 16 70363796 70363796 A C DDX19B Missense_Mutation p.K283T 0.06 tolerated(0.21) benign(0.006) TCGA-4Z-AA7W-01 16 70818064 70818064 C G VAC14 Missense_Mutation p.E182D 0.42 deleterious(0.01) benign(0.179) TCGA-4Z-AA7W-01 16 75564160 75564160 G A CHST5 Silent p.T41T 0.17 TCGA-4Z-AA7W-01 16 77317892 77317892 G A ADAMTS18 Silent p.Y1209Y 0.23 TCGA-4Z-AA7W-01 16 79632907 79632907 T G MAF Missense_Mutation p.N298T 0.07 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 16 822887 822887 C T MSLNL Intron 0.38 TCGA-4Z-AA7W-01 16 84118642 84118642 G C MBTPS1 Nonsense_Mutation p.S411* 0.23 TCGA-4Z-AA7W-01 16 84213557 84213557 G A TAF1C Missense_Mutation p.T565I 0.11 tolerated(0.15) benign(0.289) TCGA-4Z-AA7W-01 16 86612650 86612650 C T FOXL1 Silent p.F107F 0.23 TCGA-4Z-AA7W-01 17 15960898 15960898 G A NCOR1 Nonsense_Mutation p.Q2108* 0.31 TCGA-4Z-AA7W-01 17 17394833 17394833 G C MED9 3'UTR 0.20 TCGA-4Z-AA7W-01 17 18906868 18906868 C T FAM83G Missense_Mutation p.E163K 0.48 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 17 19689252 19689252 G A ULK2 Missense_Mutation p.S750L 0.18 tolerated(0.06) benign(0.074) TCGA-4Z-AA7W-01 17 26688298 26688298 G C TMEM199 3'UTR 0.29 TCGA-4Z-AA7W-01 17 26975995 26975995 G C SDF2 3'UTR 0.15 TCGA-4Z-AA7W-01 17 26976120 26976120 C G SDF2 Missense_Mutation p.E175Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 17 27042682 27042682 G C RAB34 Nonsense_Mutation p.S176* 0.08 TCGA-4Z-AA7W-01 17 28788910 28788910 C T CPD Missense_Mutation p.H1216Y 0.06 tolerated(0.06) probably_damaging(0.952) TCGA-4Z-AA7W-01 17 34074892 34074892 C T GAS2L2 Missense_Mutation p.D270N 0.16 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 17 3649112 3649112 C G ITGAE Missense_Mutation p.W755C 0.33 deleterious(0.01) benign(0.395) TCGA-4Z-AA7W-01 17 37371225 37371225 C G STAC2 Missense_Mutation p.E251Q 0.08 tolerated(0.17) possibly_damaging(0.501) TCGA-4Z-AA7W-01 17 39116612 39116612 C G KRT39 Missense_Mutation p.E380Q 0.12 tolerated(1) possibly_damaging(0.586) TCGA-4Z-AA7W-01 17 40021502 40021502 C G KLHL11 Missense_Mutation p.R41P 0.16 tolerated_low_confidence(0.28) benign(0.008) TCGA-4Z-AA7W-01 17 40840572 40840572 G C CNTNAP1 Missense_Mutation p.E467Q 0.15 tolerated(0.06) benign(0.027) TCGA-4Z-AA7W-01 17 40939810 40939810 G A WNK4 Missense_Mutation p.D586N 0.13 deleterious(0.02) unknown(0) TCGA-4Z-AA7W-01 17 42857109 42857109 C G ADAM11 Missense_Mutation p.S766C 0.11 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-4Z-AA7W-01 17 42857110 42857110 C A ADAM11 Silent p.S766S 0.12 TCGA-4Z-AA7W-01 17 43240142 43240142 G A HEXIM2 5'UTR 0.22 TCGA-4Z-AA7W-01 17 43240157 43240157 G T HEXIM2 5'UTR 0.21 TCGA-4Z-AA7W-01 17 44101517 44101517 C T MAPT Silent p.L771L 0.26 TCGA-4Z-AA7W-01 17 44172056 44172056 G C KANSL1 Nonsense_Mutation p.S434* 0.15 TCGA-4Z-AA7W-01 17 47041673 47041673 C G GIP Missense_Mutation p.D86H 0.13 deleterious(0.02) possibly_damaging(0.789) TCGA-4Z-AA7W-01 17 47075206 47075206 C G IGF2BP1 Missense_Mutation p.F33L 0.09 tolerated(0.44) benign(0.05) TCGA-4Z-AA7W-01 17 4837819 4837819 G A GP1BA Silent p.L640L 0.14 TCGA-4Z-AA7W-01 17 52993194 52993194 G C TOM1L1 Missense_Mutation p.E231Q 0.14 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7W-01 17 53345106 53345106 C G HLF Intron 0.14 TCGA-4Z-AA7W-01 17 54230838 54230838 C G ANKFN1 5'UTR 0.11 TCGA-4Z-AA7W-01 17 56676788 56676788 G C TEX14 Missense_Mutation p.P646A 0.17 tolerated(0.6) benign(0.036) TCGA-4Z-AA7W-01 17 5993735 5993735 G C WSCD1 Missense_Mutation p.E213Q 0.19 tolerated(0.06) benign(0.077) TCGA-4Z-AA7W-01 17 60043857 60043857 G C MED13 Silent p.L1449L 0.25 TCGA-4Z-AA7W-01 17 60813845 60813845 G C MARCH10 Missense_Mutation p.P462A 0.15 tolerated(0.06) benign(0.176) TCGA-4Z-AA7W-01 17 65026722 65026722 G C CACNG4 Missense_Mutation p.E196Q 0.31 deleterious(0.02) possibly_damaging(0.856) TCGA-4Z-AA7W-01 17 65574311 65574311 C T PITPNC1 Silent p.L102L 0.12 TCGA-4Z-AA7W-01 17 6610377 6610377 G A SLC13A5 Silent p.F67F 0.44 TCGA-4Z-AA7W-01 17 7216891 7216891 G A GPS2 Silent p.L210L 0.39 TCGA-4Z-AA7W-01 17 73000133 73000133 C T CDR2L Silent p.I454I 0.41 TCGA-4Z-AA7W-01 17 73261831 73261834 TGGA - MRPS7 Frame_Shift_Del p.W186* 0.34 TCGA-4Z-AA7W-01 17 74533594 74533594 C G CYGB Missense_Mutation p.E11Q 0.10 tolerated(0.16) possibly_damaging(0.627) TCGA-4Z-AA7W-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.28 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 17 78867587 78867587 G A RPTOR Missense_Mutation p.E775K 0.17 tolerated(0.37) benign(0.05) TCGA-4Z-AA7W-01 17 79168758 79168758 G C AZI1 Silent p.L677L 0.10 TCGA-4Z-AA7W-01 18 12674658 12674658 G C CEP76 Nonsense_Mutation p.S573* 0.12 TCGA-4Z-AA7W-01 18 3187488 3187488 G A MYOM1 Missense_Mutation p.R307C 0.06 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7W-01 18 50918042 50918042 G T DCC Missense_Mutation p.D825Y 0.10 deleterious(0) possibly_damaging(0.707) TCGA-4Z-AA7W-01 18 65180093 65180093 C G DSEL Missense_Mutation p.D595H 0.21 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 18 66378603 66378603 C G TMX3 Missense_Mutation p.D47H 0.12 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 19 11617116 11617116 G A ECSIT Silent p.L393L 0.13 TCGA-4Z-AA7W-01 19 12958471 12958471 G A MAST1 Missense_Mutation p.M178I 0.11 deleterious(0.01) benign(0.338) TCGA-4Z-AA7W-01 19 16899841 16899841 C G NWD1 Missense_Mutation p.S927C 0.10 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 19 17984953 17984953 G C SLC5A5 Missense_Mutation p.E122Q 0.13 tolerated(0.15) benign(0.2) TCGA-4Z-AA7W-01 19 18121416 18121416 G A ARRDC2 Missense_Mutation p.E350K 0.13 deleterious(0.01) benign(0.119) TCGA-4Z-AA7W-01 19 18121536 18121536 G A ARRDC2 Missense_Mutation p.E390K 0.10 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7W-01 19 18333084 18333084 G A PDE4C Nonsense_Mutation p.Q98* 0.11 TCGA-4Z-AA7W-01 19 18507488 18507488 G A LRRC25 Missense_Mutation p.P96S 0.17 tolerated(0.23) benign(0.241) TCGA-4Z-AA7W-01 19 19218746 19218746 G C SLC25A42 Missense_Mutation p.E181Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 19 19258590 19258590 C T MEF2B Missense_Mutation p.E104K 0.13 tolerated(0.05) benign(0.229) TCGA-4Z-AA7W-01 19 31768737 31768737 G A TSHZ3 Silent p.I654I 0.23 TCGA-4Z-AA7W-01 19 32954392 32954392 G A DPY19L3 Missense_Mutation p.M481I 0.31 tolerated(0.05) possibly_damaging(0.837) TCGA-4Z-AA7W-01 19 36113925 36113925 T G HAUS5 3'UTR 0.19 TCGA-4Z-AA7W-01 19 39924220 39924220 G T RPS16 Intron 0.21 TCGA-4Z-AA7W-01 19 39924227 39924227 A T RPS16 Intron 0.18 TCGA-4Z-AA7W-01 19 39924391 39924391 G A RPS16 Missense_Mutation p.P54L 0.15 deleterious(0.05) probably_damaging(0.975) TCGA-4Z-AA7W-01 19 40903216 40903216 C A PRX Missense_Mutation p.G348V 0.15 tolerated(0.56) probably_damaging(0.979) TCGA-4Z-AA7W-01 19 41916676 41916676 C G BCKDHA Silent p.V81V 0.07 TCGA-4Z-AA7W-01 19 42132322 42132322 G C CEACAM4 Missense_Mutation p.T26S 0.07 deleterious(0.03) benign(0.425) TCGA-4Z-AA7W-01 19 42265386 42265386 G C CEACAM6 Missense_Mutation p.Q218H 0.36 deleterious(0.02) probably_damaging(0.96) TCGA-4Z-AA7W-01 19 42560970 42560970 G A GRIK5 Silent p.F249F 0.18 TCGA-4Z-AA7W-01 19 42566921 42566921 C T GRIK5 Missense_Mutation p.G111R 0.29 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7W-01 19 44515209 44515209 G C ZNF230 Missense_Mutation p.E340Q 0.07 deleterious(0.03) possibly_damaging(0.835) TCGA-4Z-AA7W-01 19 44933213 44933213 G C ZNF229 Missense_Mutation p.F581L 0.12 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 19 45976150 45976150 G A FOSB Silent p.S299S 0.26 TCGA-4Z-AA7W-01 19 4891250 4891250 C T ARRDC5 Silent p.V279V 0.18 TCGA-4Z-AA7W-01 19 48925174 48925174 G C GRIN2D Missense_Mutation p.E742Q 0.15 tolerated(0.07) probably_damaging(0.994) TCGA-4Z-AA7W-01 19 49143534 49143534 G T CA11 Silent p.R97R 0.22 TCGA-4Z-AA7W-01 19 49436972 49436972 C T DHDH 5'UTR 0.15 TCGA-4Z-AA7W-01 19 51958737 51958737 C T SIGLEC8 Missense_Mutation p.R329Q 0.19 tolerated(0.58) benign(0.114) TCGA-4Z-AA7W-01 19 55685909 55685909 G C SYT5 Missense_Mutation p.F312L 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-4Z-AA7W-01 19 56481932 56481932 C T NLRP8 Missense_Mutation p.P802S 0.13 tolerated(0.36) probably_damaging(0.984) TCGA-4Z-AA7W-01 19 57802985 57802985 C T ZNF460 Missense_Mutation p.T359I 0.19 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 19 57986505 57986505 G C ZNF772 Missense_Mutation p.S70C 0.12 deleterious(0) benign(0.439) TCGA-4Z-AA7W-01 19 58601638 58601638 T C ZSCAN18 Silent p.G55G 0.17 TCGA-4Z-AA7W-01 19 643265 643265 G C FGF22 Missense_Mutation p.G82A 0.32 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 19 7184570 7184570 G C INSR Missense_Mutation p.S244C 0.10 deleterious(0.04) possibly_damaging(0.735) TCGA-4Z-AA7W-01 19 7975639 7975639 G A MAP2K7 Missense_Mutation p.R209Q 0.25 deleterious(0.02) possibly_damaging(0.786) TCGA-4Z-AA7W-01 19 8555860 8555860 G T PRAM1 Missense_Mutation p.P552T 0.09 tolerated(0.07) benign(0.331) TCGA-4Z-AA7W-01 19 8619436 8619436 G A MYO1F Missense_Mutation p.P84L 0.14 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 19 9008284 9008284 G C MUC16 Missense_Mutation p.Q13090E 0.16 benign(0.136) TCGA-4Z-AA7W-01 19 9577281 9577281 G C ZNF560 Nonsense_Mutation p.S781* 0.14 TCGA-4Z-AA7W-01 19 9940687 9940687 G A UBL5 3'UTR 0.13 TCGA-4Z-AA7W-01 1 100534136 100534136 C G HIAT1 Silent p.L271L 0.14 TCGA-4Z-AA7W-01 1 109857353 109857353 C G SORT1 Missense_Mutation p.L766F 0.11 deleterious(0.01) possibly_damaging(0.668) TCGA-4Z-AA7W-01 1 111506249 111506249 G A LRIF1 Missense_Mutation p.S21L 0.17 deleterious(0.01) possibly_damaging(0.519) TCGA-4Z-AA7W-01 1 112020662 112020662 G C C1orf162 Missense_Mutation p.E129Q 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-4Z-AA7W-01 1 112106471 112106471 G A ADORA3 Missense_Mutation p.S29L 0.13 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-4Z-AA7W-01 1 117629102 117629102 C G TTF2 Missense_Mutation p.N706K 0.17 tolerated(1) benign(0.002) TCGA-4Z-AA7W-01 1 117663586 117663586 C T TRIM45 Missense_Mutation p.E80K 0.34 tolerated(0.16) benign(0.001) TCGA-4Z-AA7W-01 1 117663630 117663630 C T TRIM45 Missense_Mutation p.R65Q 0.30 tolerated(0.15) benign(0.012) TCGA-4Z-AA7W-01 1 149858952 149858952 G C HIST2H2AC 3'UTR 0.21 TCGA-4Z-AA7W-01 1 150667281 150667281 C G GOLPH3L Missense_Mutation p.E12Q 0.05 tolerated(0.09) benign(0.143) TCGA-4Z-AA7W-01 1 150933461 150933461 G C SETDB1 Missense_Mutation p.E975Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-4Z-AA7W-01 1 151512835 151512835 G C TUFT1 5'UTR 0.05 TCGA-4Z-AA7W-01 1 152082533 152082533 C T TCHH Missense_Mutation p.E1054K 0.20 unknown(0) TCGA-4Z-AA7W-01 1 152082642 152082642 C G TCHH Missense_Mutation p.E1017D 0.14 unknown(0) TCGA-4Z-AA7W-01 1 152285927 152285927 C G FLG Missense_Mutation p.D479H 0.10 possibly_damaging(0.884) TCGA-4Z-AA7W-01 1 152484128 152484128 T A LCE5A Missense_Mutation p.C40S 0.11 tolerated_low_confidence(0.61) unknown(0) TCGA-4Z-AA7W-01 1 152733613 152733613 G A KPRP Missense_Mutation p.E517K 0.31 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-4Z-AA7W-01 1 154317865 154317865 C T ATP8B2 Silent p.S879S 0.23 TCGA-4Z-AA7W-01 1 155448355 155448355 G C ASH1L Missense_Mutation p.P1436A 0.36 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-4Z-AA7W-01 1 155874261 155874261 C T RIT1 Missense_Mutation p.M107I 0.10 tolerated(0.07) probably_damaging(0.956) TCGA-4Z-AA7W-01 1 156908293 156908293 C A ARHGEF11 Missense_Mutation p.G1370V 0.04 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-4Z-AA7W-01 1 160261157 160261157 C G COPA Missense_Mutation p.E1139Q 0.11 deleterious(0.02) benign(0.203) TCGA-4Z-AA7W-01 1 16060300 16060300 C T PLEKHM2 Silent p.L977L 0.13 TCGA-4Z-AA7W-01 1 161087747 161087747 C G PFDN2 Missense_Mutation p.E24Q 0.11 deleterious(0.05) probably_damaging(0.953) TCGA-4Z-AA7W-01 1 161087763 161087763 C T PFDN2 Silent p.K18K 0.11 TCGA-4Z-AA7W-01 1 16257938 16257938 C T SPEN Missense_Mutation p.P1735S 0.14 possibly_damaging(0.521) TCGA-4Z-AA7W-01 1 165513701 165513701 G T LRRC52 Silent p.R56R 0.15 TCGA-4Z-AA7W-01 1 167787447 167787447 G T ADCY10 Missense_Mutation p.L1449I 0.17 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 1 168073912 168073912 G A GPR161 Silent p.L79L 0.17 TCGA-4Z-AA7W-01 1 16913581 16913581 G C NBPF1 Missense_Mutation p.H248D 0.04 tolerated(0.2) benign(0.402) TCGA-4Z-AA7W-01 1 171083383 171083383 G C FMO3 Missense_Mutation p.G355A 0.07 tolerated(0.44) possibly_damaging(0.734) TCGA-4Z-AA7W-01 1 173840114 173840114 G C ZBTB37 Missense_Mutation p.E251Q 0.10 deleterious(0.02) possibly_damaging(0.514) TCGA-4Z-AA7W-01 1 178423598 178423598 G A RASAL2 Missense_Mutation p.E676K 0.10 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7W-01 1 179870457 179870457 C G TOR1AIP1 Missense_Mutation p.Q225E 0.14 tolerated_low_confidence(0.18) benign(0.09) TCGA-4Z-AA7W-01 1 20141394 20141394 C T RNF186 Silent p.L67L 0.18 TCGA-4Z-AA7W-01 1 202915696 202915696 G A ADIPOR1 Missense_Mutation p.P101S 0.12 deleterious(0.03) benign(0.225) TCGA-4Z-AA7W-01 1 203276389 203276389 G C BTG2 Silent p.L100L 0.17 TCGA-4Z-AA7W-01 1 203690464 203690464 C T ATP2B4 Missense_Mutation p.S913L 0.21 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 1 205739966 205739966 C G RAB7L1 Missense_Mutation p.W132S 0.08 tolerated(0.68) possibly_damaging(0.831) TCGA-4Z-AA7W-01 1 206619542 206619542 G C SRGAP2 Missense_Mutation p.E580Q 0.16 tolerated(0.27) possibly_damaging(0.503) TCGA-4Z-AA7W-01 1 206822133 206822133 C G DYRK3 Silent p.L530L 0.10 TCGA-4Z-AA7W-01 1 207287484 207287484 C T C4BPA Missense_Mutation p.P61L 0.12 tolerated(0.06) benign(0.445) TCGA-4Z-AA7W-01 1 20827204 20827204 C T MUL1 Silent p.V346V 0.16 TCGA-4Z-AA7W-01 1 212548621 212548621 C G TMEM206 Missense_Mutation p.D330H 0.06 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 1 220298625 220298625 G A IARS2 Missense_Mutation p.D563N 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-4Z-AA7W-01 1 220805572 220805572 G C MARK1 Missense_Mutation p.D347H 0.10 deleterious(0) benign(0.258) TCGA-4Z-AA7W-01 1 222715455 222715455 G T HHIPL2 Silent p.G339G 0.28 TCGA-4Z-AA7W-01 1 223983975 223983975 G A TP53BP2 Nonsense_Mutation p.Q756* 0.30 TCGA-4Z-AA7W-01 1 224544617 224544617 G C CNIH4 5'UTR 0.27 TCGA-4Z-AA7W-01 1 22456196 22456196 C G WNT4 Missense_Mutation p.E76Q 0.23 tolerated(0.18) benign(0.1) TCGA-4Z-AA7W-01 1 225718302 225718302 G C ENAH Missense_Mutation p.Q130E 0.13 deleterious(0.03) unknown(0) TCGA-4Z-AA7W-01 1 228433261 228433261 C G OBSCN Nonsense_Mutation p.S1302* 0.14 TCGA-4Z-AA7W-01 1 228433374 228433374 C G OBSCN Missense_Mutation p.Q1340E 0.25 benign(0.039) TCGA-4Z-AA7W-01 1 228646056 228646056 A G HIST3H2BB Missense_Mutation p.S76G 0.14 tolerated_low_confidence(1) benign(0) TCGA-4Z-AA7W-01 1 228879343 228879343 C T RHOU Silent p.L211L 0.10 TCGA-4Z-AA7W-01 1 231471604 231471604 C T EXOC8 Missense_Mutation p.E630K 0.12 deleterious(0.01) benign(0.114) TCGA-4Z-AA7W-01 1 235582873 235582873 C G TBCE Missense_Mutation p.P153A 0.23 tolerated(0.08) benign(0.191) TCGA-4Z-AA7W-01 1 236646798 236646798 C G EDARADD 3'Flank 0.50 TCGA-4Z-AA7W-01 1 242253098 242253098 C G PLD5 3'UTR 0.30 TCGA-4Z-AA7W-01 1 243668523 243668523 G A AKT3 3'UTR 0.40 TCGA-4Z-AA7W-01 1 244735753 244735753 C G C1orf101 Missense_Mutation p.F543L 0.22 tolerated(0.72) benign(0.001) TCGA-4Z-AA7W-01 1 24668748 24668748 G A GRHL3 Silent p.K397K 0.13 TCGA-4Z-AA7W-01 1 24668758 24668758 G T GRHL3 Missense_Mutation p.D401Y 0.12 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 1 248005179 248005179 G C OR11L1 Missense_Mutation p.S7C 0.11 deleterious(0) possibly_damaging(0.903) TCGA-4Z-AA7W-01 1 248128945 248128953 TAAGACCAT - OR2AK2 In_Frame_Del p.K105_I107del 0.24 TCGA-4Z-AA7W-01 1 248458439 248458439 G C OR2T12 Missense_Mutation p.L148V 0.12 tolerated(0.27) benign(0.02) TCGA-4Z-AA7W-01 1 32688054 32688054 C T EIF3I Intron 0.16 TCGA-4Z-AA7W-01 1 3389956 3389956 G A ARHGEF16 Splice_Site p.X392_splice 0.17 TCGA-4Z-AA7W-01 1 35915582 35915582 G A KIAA0319L Missense_Mutation p.H747Y 0.09 deleterious(0.01) benign(0.329) TCGA-4Z-AA7W-01 1 38040415 38040415 C G GNL2 Missense_Mutation p.E385Q 0.19 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 1 38301406 38301406 C T MTF1 Missense_Mutation p.D264N 0.21 tolerated(0.14) possibly_damaging(0.741) TCGA-4Z-AA7W-01 1 40208914 40208914 A T PPIE Silent p.T76T 0.05 TCGA-4Z-AA7W-01 1 40703144 40703144 G A RLF Missense_Mutation p.D924N 0.14 tolerated(0.5) benign(0.24) TCGA-4Z-AA7W-01 1 40981224 40981224 C A EXO5 Missense_Mutation p.D336E 0.13 tolerated(0.12) benign(0.194) TCGA-4Z-AA7W-01 1 40981225 40981225 G T EXO5 Missense_Mutation p.V337L 0.14 tolerated(0.06) benign(0.064) TCGA-4Z-AA7W-01 1 41481804 41481804 C G SLFNL1 Missense_Mutation p.V400L 0.21 tolerated(0.45) benign(0.003) TCGA-4Z-AA7W-01 1 43869301 43869301 C T SZT2 Silent p.L61L 0.18 TCGA-4Z-AA7W-01 1 44437346 44437346 C G DPH2 Missense_Mutation p.Q258E 0.14 tolerated(0.05) benign(0.012) TCGA-4Z-AA7W-01 1 46500854 46500854 G A MAST2 Missense_Mutation p.E1505K 0.11 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-4Z-AA7W-01 1 53553815 53553815 C G SLC1A7 Missense_Mutation p.E517Q 0.15 tolerated(0.46) benign(0.007) TCGA-4Z-AA7W-01 1 54332476 54332476 A C YIPF1 Missense_Mutation p.I201M 0.27 tolerated(0.09) probably_damaging(0.954) TCGA-4Z-AA7W-01 1 55518080 55518080 G C PCSK9 Missense_Mutation p.R218T 0.20 deleterious(0.01) probably_damaging(0.943) TCGA-4Z-AA7W-01 1 66101940 66101940 G A LEPR Missense_Mutation p.E914K 0.10 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7W-01 1 85128145 85128145 C A SSX2IP Nonsense_Mutation p.E248* 0.17 TCGA-4Z-AA7W-01 1 898782 898782 C G KLHL17 Missense_Mutation p.P418R 0.09 tolerated(0.08) possibly_damaging(0.814) TCGA-4Z-AA7W-01 20 20056136 20056136 C G C20orf26 Nonsense_Mutation p.S148* 0.08 TCGA-4Z-AA7W-01 20 31627168 31627168 C T BPIFB6 Missense_Mutation p.P306S 0.12 deleterious(0.01) probably_damaging(0.971) TCGA-4Z-AA7W-01 20 32346550 32346550 C G ZNF341 Silent p.L315L 0.18 TCGA-4Z-AA7W-01 20 34067053 34067053 C G CEP250 Intron 0.12 TCGA-4Z-AA7W-01 20 37076785 37076785 G A SNHG11 Intron 0.15 TCGA-4Z-AA7W-01 20 37214718 37214718 G A ADIG Nonsense_Mutation p.W57* 0.50 TCGA-4Z-AA7W-01 20 41400092 41400092 C A PTPRT Missense_Mutation p.D223Y 0.28 tolerated(0.31) probably_damaging(0.989) TCGA-4Z-AA7W-01 20 42695477 42695477 G A TOX2 Silent p.E488E 0.09 TCGA-4Z-AA7W-01 20 45362455 45362455 G A SLC2A10 Silent p.E536E 0.10 TCGA-4Z-AA7W-01 20 45867673 45867673 G T ZMYND8 Missense_Mutation p.P832T 0.10 tolerated_low_confidence(0.09) probably_damaging(1) TCGA-4Z-AA7W-01 20 55748262 55748262 C G BMP7 Missense_Mutation p.Q380H 0.23 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 20 60879544 60879544 G C ADRM1 Missense_Mutation p.E81Q 0.31 deleterious(0) possibly_damaging(0.784) TCGA-4Z-AA7W-01 20 60902943 60902943 G C LAMA5 Silent p.L1592L 0.14 TCGA-4Z-AA7W-01 21 35890486 35890486 C T RCAN1 Missense_Mutation p.D219N 0.12 tolerated(0.08) probably_damaging(0.959) TCGA-4Z-AA7W-01 21 37705941 37705941 C T MORC3 Intron 0.36 TCGA-4Z-AA7W-01 21 47703702 47703702 C T MCM3AP Missense_Mutation p.D424N 0.14 deleterious(0.03) benign(0.253) TCGA-4Z-AA7W-01 21 47704057 47704057 G C MCM3AP Missense_Mutation p.Q382E 0.09 tolerated(0.1) benign(0.15) TCGA-4Z-AA7W-01 22 29627008 29627008 G C EMID1 Splice_Site p.X156_splice 0.13 TCGA-4Z-AA7W-01 22 30731722 30731722 G C SF3A1 Silent p.V709V 0.25 TCGA-4Z-AA7W-01 22 31487760 31487760 G A SMTN Missense_Mutation p.R520Q 0.25 tolerated(0.21) benign(0.006) TCGA-4Z-AA7W-01 22 41231656 41231656 C A ST13 Missense_Mutation p.Q162H 0.30 deleterious(0.01) probably_damaging(0.93) TCGA-4Z-AA7W-01 22 42276798 42276798 G A SREBF2 Missense_Mutation p.D614N 0.12 deleterious(0) probably_damaging(0.981) TCGA-4Z-AA7W-01 22 46859965 46859965 G A CELSR1 Silent p.F1274F 0.29 TCGA-4Z-AA7W-01 2 103324979 103324979 G C SLC9A2 3'UTR 0.17 TCGA-4Z-AA7W-01 2 109381938 109381938 C G RANBP2 Nonsense_Mutation p.S1648* 0.16 TCGA-4Z-AA7W-01 2 112786126 112786126 G C MERTK Missense_Mutation p.L895F 0.15 tolerated(0.26) benign(0.197) TCGA-4Z-AA7W-01 2 114252799 114252799 G A CBWD2 Missense_Mutation p.E352K 0.22 tolerated(0.16) benign(0.049) TCGA-4Z-AA7W-01 2 114257129 114257129 C G FOXD4L1 Missense_Mutation p.S99C 0.13 deleterious(0) probably_damaging(0.912) TCGA-4Z-AA7W-01 2 131520186 131520186 G T AMER3 Missense_Mutation p.G181W 0.13 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 2 131976035 131976035 C T POTEE Silent p.L20L 0.16 TCGA-4Z-AA7W-01 2 143799613 143799613 C G KYNU Intron 0.13 TCGA-4Z-AA7W-01 2 152321102 152321102 G C RIF1 Missense_Mutation p.D1690H 0.18 deleterious(0.02) possibly_damaging(0.625) TCGA-4Z-AA7W-01 2 166535961 166535961 G C CSRNP3 Missense_Mutation p.E486Q 0.12 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-4Z-AA7W-01 2 173356197 173356197 C T ITGA6 Silent p.F978F 0.14 TCGA-4Z-AA7W-01 2 178417116 178417116 C A TTC30B Nonsense_Mutation p.E126* 0.10 TCGA-4Z-AA7W-01 2 179430058 179430058 G A TTN Missense_Mutation p.S26934L 0.13 TCGA-4Z-AA7W-01 2 179457718 179457718 T C TTN Missense_Mutation p.S19710G 0.14 TCGA-4Z-AA7W-01 2 179474033 179474033 C T TTN Missense_Mutation p.R17335H 0.14 TCGA-4Z-AA7W-01 2 179613803 179613803 C T TTN Intron 0.24 TCGA-4Z-AA7W-01 2 180310454 180310454 T C ZNF385B Silent p.G306G 0.27 TCGA-4Z-AA7W-01 2 189857621 189857621 T A COL3A1 Silent p.P335P 0.12 TCGA-4Z-AA7W-01 2 19553113 19553113 C T OSR1 Missense_Mutation p.D152N 0.11 tolerated(0.27) benign(0.001) TCGA-4Z-AA7W-01 2 201440106 201440106 C G SGOL2 Nonsense_Mutation p.S1235* 0.18 TCGA-4Z-AA7W-01 2 207953279 207953279 C T KLF7 Missense_Mutation p.E254K 0.29 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7W-01 2 219614781 219614781 C T TTLL4 Missense_Mutation p.R929C 0.20 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7W-01 2 234774744 234774744 G A MSL3P1 RNA 0.16 TCGA-4Z-AA7W-01 2 24239086 24239086 G A MFSD2B Missense_Mutation p.D95N 0.18 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7W-01 2 24262071 24262071 G A C2orf44 Silent p.S98S 0.31 TCGA-4Z-AA7W-01 2 25655818 25655818 G C DTNB Missense_Mutation p.S465C 0.40 tolerated(0.19) possibly_damaging(0.701) TCGA-4Z-AA7W-01 2 25976422 25976422 C T ASXL2 Missense_Mutation p.E375K 0.26 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 2 26706500 26706500 C T OTOF Missense_Mutation p.E408K 0.10 tolerated(0.58) benign(0.16) TCGA-4Z-AA7W-01 2 27591875 27591875 G C EIF2B4 Nonsense_Mutation p.S159* 0.16 TCGA-4Z-AA7W-01 2 27887135 27887135 G T SLC4A1AP Silent p.L172L 0.18 TCGA-4Z-AA7W-01 2 29092880 29092880 G A TRMT61B Silent p.L88L 0.23 TCGA-4Z-AA7W-01 2 29240070 29240070 G C FAM179A Missense_Mutation p.Q365H 0.06 deleterious(0) probably_damaging(0.954) TCGA-4Z-AA7W-01 2 29443569 29443569 C T ALK Intron 0.16 TCGA-4Z-AA7W-01 2 3196189 3196189 C T TSSC1 Missense_Mutation p.E329K 0.16 tolerated(0.63) benign(0.055) TCGA-4Z-AA7W-01 2 36749297 36749297 G A CRIM1 Missense_Mutation p.E757K 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-4Z-AA7W-01 2 36749363 36749363 G T CRIM1 Missense_Mutation p.D779Y 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7W-01 2 39241090 39241090 T C SOS1 Missense_Mutation p.I661V 0.20 tolerated(0.36) benign(0.001) TCGA-4Z-AA7W-01 2 48936114 48936114 A T LHCGR Missense_Mutation p.F218Y 0.17 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA7W-01 2 55408749 55408749 C G CLHC1 Missense_Mutation p.E380Q 0.11 tolerated(0.06) possibly_damaging(0.829) TCGA-4Z-AA7W-01 2 62053614 62053614 C G FAM161A Missense_Mutation p.E709D 0.23 tolerated(0.05) unknown(0) TCGA-4Z-AA7W-01 2 70165249 70165249 G C MXD1 Missense_Mutation p.E167Q 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-4Z-AA7W-01 2 74717397 74717397 G A TTC31 Missense_Mutation p.E87K 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.66) TCGA-4Z-AA7W-01 2 74742839 74742839 G A TLX2 Silent p.P160P 0.16 TCGA-4Z-AA7W-01 2 74746796 74746796 C T DQX1 Missense_Mutation p.E565K 0.30 deleterious(0.02) possibly_damaging(0.639) TCGA-4Z-AA7W-01 2 85808710 85808710 C A VAMP8 Missense_Mutation p.F58L 0.13 deleterious(0) probably_damaging(0.955) TCGA-4Z-AA7W-01 2 88327359 88327359 C G KRCC1 Missense_Mutation p.G242R 0.14 tolerated(0.11) probably_damaging(0.971) TCGA-4Z-AA7W-01 2 88327580 88327580 C G KRCC1 Missense_Mutation p.R168T 0.24 tolerated(0.07) benign(0.218) TCGA-4Z-AA7W-01 2 89326931 89326931 G A IGKV3-11 Missense_Mutation p.P28S 0.11 deleterious(0) benign(0.218) TCGA-4Z-AA7W-01 2 97217262 97217262 C G ARID5A Missense_Mutation p.P333A 0.15 tolerated(0.13) benign(0.025) TCGA-4Z-AA7W-01 2 97427282 97427282 C G CNNM4 Silent p.L182L 0.14 TCGA-4Z-AA7W-01 2 98419203 98419203 G C TMEM131 Nonsense_Mutation p.S818* 0.15 TCGA-4Z-AA7W-01 2 98422018 98422018 G C TMEM131 Nonsense_Mutation p.S735* 0.24 TCGA-4Z-AA7W-01 3 101574680 101574680 G A NFKBIZ Silent p.L586L 0.08 TCGA-4Z-AA7W-01 3 112693690 112693690 C A CD200R1 Missense_Mutation p.W5C 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-4Z-AA7W-01 3 115738453 115738453 G A LSAMP Silent p.V141V 0.20 TCGA-4Z-AA7W-01 3 118865711 118865711 G A C3orf30 Silent p.Q225Q 0.20 TCGA-4Z-AA7W-01 3 118866261 118866261 G C C3orf30 Missense_Mutation p.E409Q 0.19 tolerated(0.06) benign(0.277) TCGA-4Z-AA7W-01 3 122575151 122575151 C T DIRC2 Intron 0.20 TCGA-4Z-AA7W-01 3 124377275 124377275 C T KALRN Intron 0.10 TCGA-4Z-AA7W-01 3 125639728 125639728 C G FAM86JP RNA 0.13 TCGA-4Z-AA7W-01 3 128341090 128341090 C G RPN1 Missense_Mutation p.E520Q 0.17 tolerated(0.19) benign(0.146) TCGA-4Z-AA7W-01 3 128345616 128345616 C T RPN1 Missense_Mutation p.D366N 0.24 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA7W-01 3 129389413 129389413 G C TMCC1 Missense_Mutation p.S424C 0.19 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 3 133306974 133306974 G C CDV3 3'UTR 0.30 TCGA-4Z-AA7W-01 3 13370418 13370418 G C NUP210 Missense_Mutation p.S1380C 0.08 deleterious(0) possibly_damaging(0.77) TCGA-4Z-AA7W-01 3 136664519 136664519 C G NCK1 Silent p.L107L 0.11 TCGA-4Z-AA7W-01 3 141905047 141905047 C T GK5 Silent p.V248V 0.16 TCGA-4Z-AA7W-01 3 14199645 14199645 C A XPC Missense_Mutation p.D580Y 0.09 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 3 145914488 145914488 C T PLSCR4 Silent p.K239K 0.20 TCGA-4Z-AA7W-01 3 147128734 147128734 G A ZIC1 Missense_Mutation p.E279K 0.21 deleterious(0.02) benign(0.069) TCGA-4Z-AA7W-01 3 151171181 151171181 C T IGSF10 Missense_Mutation p.E236K 0.10 tolerated(0.21) benign(0.004) TCGA-4Z-AA7W-01 3 16313224 16313224 C A OXNAD1 Silent p.R60R 0.09 TCGA-4Z-AA7W-01 3 16475372 16475372 G C RFTN1 Missense_Mutation p.I106M 0.09 deleterious(0) possibly_damaging(0.89) TCGA-4Z-AA7W-01 3 164756908 164756908 C T SI Silent p.V753V 0.15 TCGA-4Z-AA7W-01 3 169569542 169569542 C G LRRC31 Missense_Mutation p.E342Q 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-4Z-AA7W-01 3 169574583 169574583 G C LRRC31 Missense_Mutation p.L189V 0.19 tolerated(0.18) benign(0.058) TCGA-4Z-AA7W-01 3 169644345 169644345 G C SAMD7 Missense_Mutation p.E99Q 0.15 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 3 17051886 17051886 C A PLCL2 Missense_Mutation p.Q224K 0.10 tolerated(0.08) probably_damaging(0.955) TCGA-4Z-AA7W-01 3 17056240 17056240 C A PLCL2 Missense_Mutation p.S826Y 0.10 deleterious(0) benign(0.396) TCGA-4Z-AA7W-01 3 173322227 173322227 C A NLGN1 5'UTR 0.13 TCGA-4Z-AA7W-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.17 tolerated(0.11) possibly_damaging(0.529) TCGA-4Z-AA7W-01 3 183670916 183670916 G A ABCC5 Silent p.F875F 0.14 TCGA-4Z-AA7W-01 3 183858504 183858504 C G EIF2B5 Missense_Mutation p.P381R 0.14 tolerated(0.71) benign(0.001) TCGA-4Z-AA7W-01 3 183860370 183860370 G T EIF2B5 Nonsense_Mutation p.E509* 0.28 TCGA-4Z-AA7W-01 3 183860626 183860626 G A EIF2B5 Missense_Mutation p.E536K 0.37 tolerated(0.25) benign(0.206) TCGA-4Z-AA7W-01 3 184071459 184071459 C G CLCN2 Missense_Mutation p.E616Q 0.23 deleterious(0) possibly_damaging(0.821) TCGA-4Z-AA7W-01 3 184075196 184075196 G A CLCN2 Silent p.F284F 0.23 TCGA-4Z-AA7W-01 3 185165692 185165692 G C MAP3K13 Missense_Mutation p.E323Q 0.21 deleterious(0) probably_damaging(0.936) TCGA-4Z-AA7W-01 3 185198087 185198087 G C MAP3K13 Missense_Mutation p.D857H 0.35 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-4Z-AA7W-01 3 185390367 185390367 G A IGF2BP2 Missense_Mutation p.R388C 0.28 tolerated(0.18) possibly_damaging(0.855) TCGA-4Z-AA7W-01 3 189604224 189604224 C T TP63 Missense_Mutation p.P464L 0.24 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA7W-01 3 189604229 189604229 C T TP63 Silent p.L466L 0.23 TCGA-4Z-AA7W-01 3 193374929 193374929 G C OPA1 Missense_Mutation p.E729Q 0.24 tolerated(0.06) benign(0.439) TCGA-4Z-AA7W-01 3 195798971 195798971 C T TFRC Missense_Mutation p.E163K 0.36 deleterious(0.02) possibly_damaging(0.748) TCGA-4Z-AA7W-01 3 33686705 33686705 C T CLASP2 Intron 0.15 TCGA-4Z-AA7W-01 3 38038667 38038667 G A VILL Missense_Mutation p.E184K 0.13 tolerated(0.07) possibly_damaging(0.521) TCGA-4Z-AA7W-01 3 38163902 38163902 G A DLEC1 Silent p.%3D 0.09 TCGA-4Z-AA7W-01 3 38522888 38522888 G C ACVR2B Missense_Mutation p.V336L 0.17 deleterious(0.01) benign(0.257) TCGA-4Z-AA7W-01 3 38753898 38753898 G C SCN10A Missense_Mutation p.I1281M 0.09 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 3 44894273 44894273 C A KIF15 3'UTR 0.14 TCGA-4Z-AA7W-01 3 46009035 46009035 C G FYCO1 Missense_Mutation p.E597D 0.15 deleterious(0.01) benign(0.213) TCGA-4Z-AA7W-01 3 48501657 48501657 G C ATRIP Missense_Mutation p.E402Q 0.15 deleterious(0.04) possibly_damaging(0.907) TCGA-4Z-AA7W-01 3 49059798 49059798 C G NDUFAF3 Missense_Mutation p.R33G 0.16 deleterious(0.04) possibly_damaging(0.895) TCGA-4Z-AA7W-01 3 49690290 49690290 G C BSN Missense_Mutation p.E1101Q 0.24 unknown(0) TCGA-4Z-AA7W-01 3 49867149 49867149 C T TRAIP Silent p.E379E 0.22 TCGA-4Z-AA7W-01 3 52430720 52430720 C G DNAH1 Missense_Mutation p.F3839L 0.16 benign(0.316) TCGA-4Z-AA7W-01 3 52816059 52816059 G C ITIH1 Missense_Mutation p.R264P 0.21 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA7W-01 3 52874424 52874424 G C TMEM110 3'UTR 0.17 TCGA-4Z-AA7W-01 3 55513487 55513488 - A WNT5A Frame_Shift_Ins p.C83Vfs*38 0.15 TCGA-4Z-AA7W-01 3 57107992 57107992 C G SPATA12 Missense_Mutation p.I90M 0.13 tolerated_low_confidence(0.27) possibly_damaging(0.506) TCGA-4Z-AA7W-01 3 57135275 57135275 C G IL17RD Missense_Mutation p.D366H 0.10 deleterious(0.02) possibly_damaging(0.521) TCGA-4Z-AA7W-01 3 58120491 58120491 C T FLNB Nonsense_Mutation p.Q1586* 0.23 TCGA-4Z-AA7W-01 3 62189111 62189111 G C PTPRG Missense_Mutation p.A548P 0.27 tolerated(0.22) benign(0.002) TCGA-4Z-AA7W-01 3 77089890 77089890 C G ROBO2 Intron 0.17 TCGA-4Z-AA7W-01 3 97617757 97617757 G C CRYBG3 Missense_Mutation p.E630Q 0.30 tolerated(0.34) benign(0.284) TCGA-4Z-AA7W-01 4 100341949 100341949 A C ADH7 Missense_Mutation p.V209G 0.13 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 4 109543138 109543138 G A RPL34 Missense_Mutation p.R8Q 0.10 deleterious(0.04) benign(0.011) TCGA-4Z-AA7W-01 4 110790865 110790865 C A LRIT3 Silent p.S320S 0.14 TCGA-4Z-AA7W-01 4 119948453 119948453 C G SYNPO2 Missense_Mutation p.S310C 0.23 deleterious(0) probably_damaging(0.924) TCGA-4Z-AA7W-01 4 120474858 120474858 C T PDE5A Missense_Mutation p.V415I 0.17 tolerated(0.06) benign(0.077) TCGA-4Z-AA7W-01 4 122743702 122743702 C T CCNA2 Missense_Mutation p.E105K 0.09 tolerated(0.11) benign(0.115) TCGA-4Z-AA7W-01 4 123161461 123161461 G A KIAA1109 Missense_Mutation p.E1542K 0.26 probably_damaging(0.91) TCGA-4Z-AA7W-01 4 126241095 126241095 T C FAT4 Missense_Mutation p.F1177L 0.05 benign(0.014) TCGA-4Z-AA7W-01 4 128715244 128715244 A G HSPA4L Silent p.S40S 0.20 TCGA-4Z-AA7W-01 4 129792519 129792519 C G JADE1 Missense_Mutation p.S544C 0.08 deleterious(0.02) possibly_damaging(0.784) TCGA-4Z-AA7W-01 4 144390255 144390255 G A GAB1 Silent p.K696K 0.14 TCGA-4Z-AA7W-01 4 147741316 147741316 C G TTC29 Silent p.V354V 0.17 TCGA-4Z-AA7W-01 4 153692087 153692087 C G TIGD4 Missense_Mutation p.E24Q 0.19 deleterious(0.05) possibly_damaging(0.713) TCGA-4Z-AA7W-01 4 15516473 15516473 C T CC2D2A Silent p.F287F 0.08 TCGA-4Z-AA7W-01 4 155470071 155470071 G C PLRG1 Missense_Mutation p.S9C 0.15 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 4 169279368 169279368 T A DDX60L Missense_Mutation p.Q1684L 0.47 deleterious(0) probably_damaging(0.938) TCGA-4Z-AA7W-01 4 169374374 169374374 G A DDX60L Silent p.L299L 0.39 TCGA-4Z-AA7W-01 4 170398311 170398311 C T NEK1 Missense_Mutation p.E800K 0.21 tolerated(0.07) benign(0.034) TCGA-4Z-AA7W-01 4 183814213 183814213 G C DCTD Silent p.L154L 0.08 TCGA-4Z-AA7W-01 4 185578442 185578442 C G PRIMPOL Missense_Mutation p.Q50E 0.15 benign(0.006) TCGA-4Z-AA7W-01 4 186380588 186380588 G T CCDC110 Missense_Mutation p.L385I 0.10 tolerated(0.15) benign(0.041) TCGA-4Z-AA7W-01 4 4322864 4322864 G A ZBTB49 Missense_Mutation p.D707N 0.10 tolerated(0.08) benign(0.148) TCGA-4Z-AA7W-01 4 437282 437282 C T ZNF721 Missense_Mutation p.R325K 0.08 tolerated(0.23) possibly_damaging(0.812) TCGA-4Z-AA7W-01 4 48584583 48584583 C G FRYL Missense_Mutation p.K639N 0.27 deleterious(0) possibly_damaging(0.507) TCGA-4Z-AA7W-01 4 48584684 48584684 C G FRYL Missense_Mutation p.D606H 0.25 deleterious(0) possibly_damaging(0.789) TCGA-4Z-AA7W-01 4 55127289 55127289 C G PDGFRA Nonsense_Mutation p.S26* 0.27 TCGA-4Z-AA7W-01 4 6864723 6864723 C G KIAA0232 Missense_Mutation p.Q872E 0.17 tolerated_low_confidence(0.12) benign(0.005) TCGA-4Z-AA7W-01 4 71347550 71347550 G A MUC7 Missense_Mutation p.M363I 0.10 tolerated_low_confidence(0.61) unknown(0) TCGA-4Z-AA7W-01 4 73923841 73923841 G C COX18 Nonsense_Mutation p.S331* 0.08 TCGA-4Z-AA7W-01 4 74285275 74285275 G A ALB Silent p.L568L 0.22 TCGA-4Z-AA7W-01 4 74863803 74863803 C T CXCL5 Silent p.L84L 0.12 TCGA-4Z-AA7W-01 4 80899316 80899316 C T ANTXR2 Missense_Mutation p.D398N 0.34 deleterious(0.02) probably_damaging(0.911) TCGA-4Z-AA7W-01 4 85525508 85525508 C T CDS1 Missense_Mutation p.S77F 0.07 deleterious(0) probably_damaging(0.91) TCGA-4Z-AA7W-01 4 89668840 89668840 G C FAM13A Missense_Mutation p.S775C 0.26 tolerated(0.14) benign(0.012) TCGA-4Z-AA7W-01 4 95561490 95561490 C G PDLIM5 Nonsense_Mutation p.S420* 0.16 TCGA-4Z-AA7W-01 4 9998560 9998560 G C SLC2A9 Missense_Mutation p.I85M 0.15 tolerated(0.44) probably_damaging(1) TCGA-4Z-AA7W-01 5 1032267 1032267 G A NKD2 Missense_Mutation p.E48K 0.09 tolerated(0.14) probably_damaging(0.925) TCGA-4Z-AA7W-01 5 112720752 112720752 C G MCC Missense_Mutation p.D110H 0.31 deleterious_low_confidence(0.02) benign(0.093) TCGA-4Z-AA7W-01 5 115346571 115346571 G C AQPEP Missense_Mutation p.D743H 0.11 tolerated(0.05) possibly_damaging(0.777) TCGA-4Z-AA7W-01 5 1294389 1294389 G C TERT Missense_Mutation p.N204K 0.15 tolerated(0.54) benign(0.003) TCGA-4Z-AA7W-01 5 13717581 13717581 G T DNAH5 Missense_Mutation p.P4183H 0.10 probably_damaging(0.971) TCGA-4Z-AA7W-01 5 13841170 13841170 C T DNAH5 Missense_Mutation p.D1852N 0.17 possibly_damaging(0.539) TCGA-4Z-AA7W-01 5 140048815 140048815 C G WDR55 Missense_Mutation p.S271C 0.19 tolerated(0.07) benign(0.414) TCGA-4Z-AA7W-01 5 140626595 140626595 C T PCDHB15 Silent p.N483N 0.28 TCGA-4Z-AA7W-01 5 140810657 140810657 G A PCDHGA12 Missense_Mutation p.E111K 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-4Z-AA7W-01 5 147258356 147258356 A G SCGB3A2 5'UTR 0.20 TCGA-4Z-AA7W-01 5 156244 156244 C G PLEKHG4B Missense_Mutation p.P400R 0.06 tolerated(0.16) benign(0.274) TCGA-4Z-AA7W-01 5 1589370 1589370 T C SDHAP3 RNA 0.09 TCGA-4Z-AA7W-01 5 169028327 169028327 C T SPDL1 Silent p.L456L 0.12 TCGA-4Z-AA7W-01 5 170883860 170883860 G C FGF18 3'UTR 0.16 TCGA-4Z-AA7W-01 5 176721872 176721872 G T NSD1 Silent p.P2501P 0.23 TCGA-4Z-AA7W-01 5 177036642 177036642 C G B4GALT7 Silent p.L310L 0.27 TCGA-4Z-AA7W-01 5 179405246 179405246 C T RNF130 Missense_Mutation p.E269K 0.26 deleterious(0) possibly_damaging(0.793) TCGA-4Z-AA7W-01 5 2752807 2752807 C T C5orf38 Missense_Mutation p.P91L 0.10 tolerated_low_confidence(0.05) possibly_damaging(0.851) TCGA-4Z-AA7W-01 5 35876084 35876084 G A IL7R Splice_Site p.X293_splice 0.06 TCGA-4Z-AA7W-01 5 43280372 43280372 C G NIM1K Silent p.L284L 0.08 TCGA-4Z-AA7W-01 5 71756118 71756118 G T ZNF366 Missense_Mutation p.F402L 0.22 deleterious(0) probably_damaging(0.918) TCGA-4Z-AA7W-01 5 74041974 74041974 C G GFM2 Missense_Mutation p.E209Q 0.17 tolerated(0.33) benign(0.093) TCGA-4Z-AA7W-01 5 7520877 7520877 C T ADCY2 Silent p.F145F 0.14 TCGA-4Z-AA7W-01 5 79084914 79084914 C T CMYA5 Silent p.L3892L 0.33 TCGA-4Z-AA7W-01 5 94903650 94903650 C G ARSK Missense_Mutation p.L105V 0.18 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 6 101103664 101103664 C G ASCC3 Missense_Mutation p.E912Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA7W-01 6 101214545 101214545 C T ASCC3 Missense_Mutation p.E545K 0.16 deleterious(0) probably_damaging(0.986) TCGA-4Z-AA7W-01 6 107372472 107372472 C G C6orf203 3'UTR 0.33 TCGA-4Z-AA7W-01 6 143092379 143092379 G A HIVEP2 Missense_Mutation p.S1166F 0.14 deleterious(0.05) benign(0.136) TCGA-4Z-AA7W-01 6 143092804 143092804 C G HIVEP2 Missense_Mutation p.Q1024H 0.15 tolerated(0.1) benign(0.213) TCGA-4Z-AA7W-01 6 143094725 143094725 G A HIVEP2 Missense_Mutation p.S384L 0.17 deleterious(0) possibly_damaging(0.906) TCGA-4Z-AA7W-01 6 149953935 149953935 C G KATNA1 Missense_Mutation p.E94Q 0.25 deleterious(0.05) benign(0.084) TCGA-4Z-AA7W-01 6 151672107 151672107 G C AKAP12 Missense_Mutation p.E861Q 0.14 deleterious(0) possibly_damaging(0.861) TCGA-4Z-AA7W-01 6 152527344 152527344 G A SYNE1 Missense_Mutation p.R7660W 0.06 benign(0.339) TCGA-4Z-AA7W-01 6 152708509 152708509 C G SYNE1 Missense_Mutation p.E2729Q 0.16 benign(0.035) TCGA-4Z-AA7W-01 6 155153084 155153084 G A SCAF8 Missense_Mutation p.D791N 0.18 tolerated_low_confidence(0.21) possibly_damaging(0.554) TCGA-4Z-AA7W-01 6 26045759 26045759 C A HIST1H3C Missense_Mutation p.R41S 0.14 deleterious_low_confidence(0) benign(0.044) TCGA-4Z-AA7W-01 6 26188949 26188949 G A HIST1H4D 3'UTR 0.10 TCGA-4Z-AA7W-01 6 26450339 26450339 G T BTN3A3 Missense_Mutation p.W332C 0.08 deleterious(0) possibly_damaging(0.759) TCGA-4Z-AA7W-01 6 27420670 27420670 T G ZNF184 Missense_Mutation p.K223T 0.11 deleterious(0.02) possibly_damaging(0.724) TCGA-4Z-AA7W-01 6 29797359 29797359 G T HLA-G Missense_Mutation p.D262Y 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-4Z-AA7W-01 6 29976912 29976912 C G ZNRD1-AS1 RNA 0.37 TCGA-4Z-AA7W-01 6 30121747 30121747 C G TRIM10 Nonstop_Mutation p.*482Sext*34 0.12 TCGA-4Z-AA7W-01 6 30698706 30698706 C T FLOT1 Missense_Mutation p.E299K 0.20 deleterious(0) benign(0.382) TCGA-4Z-AA7W-01 6 31604138 31604138 C G PRRC2A Missense_Mutation p.S1926C 0.10 unknown(0) TCGA-4Z-AA7W-01 6 31838418 31838418 C T SLC44A4 Silent p.R333R 0.57 TCGA-4Z-AA7W-01 6 31855410 31855410 C T EHMT2 Missense_Mutation p.R652Q 0.21 tolerated(0.05) benign(0.009) TCGA-4Z-AA7W-01 6 32029944 32029944 G T TNXB Silent p.I2386I 0.11 TCGA-4Z-AA7W-01 6 32155024 32155024 G C PBX2 Missense_Mutation p.S340C 0.44 deleterious(0.02) probably_damaging(0.947) TCGA-4Z-AA7W-01 6 32172069 32172069 C G NOTCH4 Missense_Mutation p.G988A 0.12 deleterious(0) probably_damaging(0.921) TCGA-4Z-AA7W-01 6 33235673 33235673 C T VPS52 Missense_Mutation p.R301H 0.13 deleterious(0) possibly_damaging(0.86) TCGA-4Z-AA7W-01 6 33255195 33255195 G C WDR46 Missense_Mutation p.I272M 0.27 deleterious(0.01) benign(0.352) TCGA-4Z-AA7W-01 6 35747197 35747197 G C CLPSL2 Missense_Mutation p.L91F 0.27 tolerated(0.21) probably_damaging(0.934) TCGA-4Z-AA7W-01 6 35919244 35919244 C G SLC26A8 Missense_Mutation p.L755F 0.08 deleterious(0.03) probably_damaging(0.97) TCGA-4Z-AA7W-01 6 43006203 43006203 G C CUL7 Silent p.L1609L 0.33 TCGA-4Z-AA7W-01 6 43008116 43008116 C T CUL7 Missense_Mutation p.E1442K 0.08 tolerated(0.39) benign(0.029) TCGA-4Z-AA7W-01 6 43305480 43305480 C G ZNF318 Missense_Mutation p.E2086Q 0.14 benign(0.039) TCGA-4Z-AA7W-01 6 43488746 43488746 G C POLR1C Missense_Mutation p.K294N 0.20 deleterious(0.02) benign(0.161) TCGA-4Z-AA7W-01 6 43582247 43582247 G C POLH Missense_Mutation p.E699Q 0.13 tolerated(0.61) benign(0.006) TCGA-4Z-AA7W-01 6 43752275 43752275 C G VEGFA Intron 0.13 TCGA-4Z-AA7W-01 6 44254163 44254163 C T TCTE1 Silent p.E128E 0.11 TCGA-4Z-AA7W-01 6 44922297 44922297 C G SUPT3H Missense_Mutation p.E221Q 0.42 deleterious(0.01) probably_damaging(0.944) TCGA-4Z-AA7W-01 6 46623609 46623609 C G SLC25A27 Missense_Mutation p.R46G 0.20 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 6 46657366 46657366 G C TDRD6 Missense_Mutation p.E501Q 0.08 deleterious(0.01) possibly_damaging(0.661) TCGA-4Z-AA7W-01 6 50683246 50683246 C T TFAP2D Nonsense_Mutation p.Q153* 0.10 TCGA-4Z-AA7W-01 6 51889373 51889373 G A PKHD1 Silent p.F1745F 0.12 TCGA-4Z-AA7W-01 6 5216946 5216946 C G LYRM4 Missense_Mutation p.D38H 0.10 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA7W-01 6 52657774 52657774 G T GSTA1 Missense_Mutation p.S142R 0.11 tolerated(0.08) possibly_damaging(0.814) TCGA-4Z-AA7W-01 6 84862615 84862625 TCTTCATTGAG - KIAA1009 Frame_Shift_Del p.L1090Tfs*51 0.20 TCGA-4Z-AA7W-01 6 90455208 90455208 C T MDN1 Intron 0.19 TCGA-4Z-AA7W-01 7 100280056 100280056 C T GIGYF1 Missense_Mutation p.E884K 0.15 deleterious(0) probably_damaging(0.952) TCGA-4Z-AA7W-01 7 107423492 107423492 C G SLC26A3 Missense_Mutation p.R389T 0.19 deleterious(0.02) possibly_damaging(0.515) TCGA-4Z-AA7W-01 7 107880482 107880482 C A NRCAM Missense_Mutation p.K9N 0.11 deleterious(0.02) benign(0.011) TCGA-4Z-AA7W-01 7 111381191 111381191 T C DOCK4 Missense_Mutation p.T1658A 0.20 tolerated(0.15) possibly_damaging(0.54) TCGA-4Z-AA7W-01 7 123269430 123269430 C T ASB15 Missense_Mutation p.S461L 0.12 tolerated(0.13) benign(0.002) TCGA-4Z-AA7W-01 7 124404592 124404592 G C GPR37 Missense_Mutation p.Q147E 0.10 tolerated_low_confidence(0.12) benign(0.001) TCGA-4Z-AA7W-01 7 127670472 127670472 G C LRRC4 Silent p.P74P 0.10 TCGA-4Z-AA7W-01 7 129832510 129832510 C G TMEM209 Missense_Mutation p.D243H 0.19 deleterious(0.04) possibly_damaging(0.459) TCGA-4Z-AA7W-01 7 137792300 137792300 C G AKR1D1 Missense_Mutation p.L277V 0.09 deleterious(0.02) benign(0.006) TCGA-4Z-AA7W-01 7 142498766 142498766 G C TRBC2 Missense_Mutation p.E15Q 0.08 tolerated(0.1) benign(0.237) TCGA-4Z-AA7W-01 7 142498786 142498786 C G TRBC2 Missense_Mutation p.I21M 0.09 deleterious(0) probably_damaging(0.918) TCGA-4Z-AA7W-01 7 142562457 142562457 G A EPHB6 Missense_Mutation p.R300H 0.20 tolerated(0.5) benign(0.001) TCGA-4Z-AA7W-01 7 148768420 148768420 G A ZNF786 Nonsense_Mutation p.Q482* 0.12 TCGA-4Z-AA7W-01 7 151478311 151478311 G C PRKAG2 Silent p.S131S 0.14 TCGA-4Z-AA7W-01 7 20198186 20198186 C A MACC1 Nonsense_Mutation p.G600* 0.11 TCGA-4Z-AA7W-01 7 23224848 23224848 G T NUPL2 Missense_Mutation p.G94V 0.17 tolerated(0.1) benign(0.167) TCGA-4Z-AA7W-01 7 23385677 23385677 C T IGF2BP3 Missense_Mutation p.E275K 0.14 tolerated(0.14) benign(0.045) TCGA-4Z-AA7W-01 7 26225055 26225055 C A NFE2L3 Silent p.I579I 0.08 TCGA-4Z-AA7W-01 7 27142023 27142023 G A HOXA2 Nonsense_Mutation p.Q33* 0.11 TCGA-4Z-AA7W-01 7 32588485 32588485 C A AVL9 Silent p.I109I 0.09 TCGA-4Z-AA7W-01 7 36657921 36657921 C G AOAH Missense_Mutation p.E245Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 7 44714014 44714014 G C OGDH Missense_Mutation p.E265Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 7 48284178 48284178 A G ABCA13 Missense_Mutation p.Q423R 0.18 benign(0.091) TCGA-4Z-AA7W-01 7 5330777 5330777 G C SLC29A4 Missense_Mutation p.M108I 0.08 tolerated(0.08) benign(0.196) TCGA-4Z-AA7W-01 7 5569259 5569259 G C ACTB Silent p.V10V 0.12 TCGA-4Z-AA7W-01 7 6629917 6629917 G A C7orf26 Translation_Start_Site p.M1? 0.12 deleterious(0.01) benign(0.216) TCGA-4Z-AA7W-01 7 77423609 77423609 C T TMEM60 Missense_Mutation p.D28N 0.18 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7W-01 7 77484139 77484139 C G PHTF2 Intron 0.21 TCGA-4Z-AA7W-01 7 82584311 82584311 C T PCLO Silent p.Q1986Q 0.37 TCGA-4Z-AA7W-01 7 90338818 90338818 C T CDK14 5'UTR 0.33 TCGA-4Z-AA7W-01 7 91668079 91668079 G C AKAP9 Missense_Mutation p.R1562T 0.12 benign(0.019) TCGA-4Z-AA7W-01 7 94248141 94248141 G C SGCE Missense_Mutation p.N197K 0.13 tolerated(0.27) possibly_damaging(0.888) TCGA-4Z-AA7W-01 7 97944873 97944873 C T BAIAP2L1 Missense_Mutation p.D180N 0.23 deleterious(0) possibly_damaging(0.744) TCGA-4Z-AA7W-01 7 97944886 97944886 C T BAIAP2L1 Silent p.Q175Q 0.22 TCGA-4Z-AA7W-01 7 99661724 99661724 G A ZSCAN21 Silent p.E302E 0.15 TCGA-4Z-AA7W-01 7 99662104 99662104 C G ZSCAN21 Missense_Mutation p.S429C 0.29 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA7W-01 8 100168921 100168921 C G VPS13B Missense_Mutation p.Q720E 0.36 tolerated(0.06) possibly_damaging(0.585) TCGA-4Z-AA7W-01 8 101153084 101153084 G C FBXO43 Missense_Mutation p.F466L 0.14 tolerated(0.79) benign(0.001) TCGA-4Z-AA7W-01 8 101153599 101153599 C G FBXO43 Missense_Mutation p.D295H 0.13 deleterious(0.04) possibly_damaging(0.64) TCGA-4Z-AA7W-01 8 105026816 105026816 C T RIMS2 Missense_Mutation p.L1103F 0.23 deleterious_low_confidence(0) benign(0.237) TCGA-4Z-AA7W-01 8 121357796 121357796 G A COL14A1 Missense_Mutation p.E1691K 0.27 deleterious(0) possibly_damaging(0.559) TCGA-4Z-AA7W-01 8 121383580 121383580 C G COL14A1 3'UTR 0.38 TCGA-4Z-AA7W-01 8 124238847 124238847 G C C8orf76 Missense_Mutation p.Q281E 0.09 deleterious(0) benign(0.125) TCGA-4Z-AA7W-01 8 126114644 126114644 C G NSMCE2 Silent p.L24L 0.35 TCGA-4Z-AA7W-01 8 141561521 141561521 C T AGO2 Silent p.A428A 0.15 TCGA-4Z-AA7W-01 8 144680442 144680442 G C TIGD5 Missense_Mutation p.E123D 0.22 tolerated(0.34) benign(0.288) TCGA-4Z-AA7W-01 8 145638738 145638738 C T SLC39A4 Missense_Mutation p.D504N 0.33 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7W-01 8 2054135 2054135 C G MYOM2 Silent p.S946S 0.14 TCGA-4Z-AA7W-01 8 25279185 25279185 C G GNRH1 Splice_Site p.X48_splice 0.33 TCGA-4Z-AA7W-01 8 28206339 28206339 C A ZNF395 Missense_Mutation p.R480L 0.17 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 8 37729560 37729560 C T RAB11FIP1 Silent p.V920V 0.11 TCGA-4Z-AA7W-01 8 41554233 41554233 G A ANK1 Missense_Mutation p.S940L 0.15 tolerated(0.98) possibly_damaging(0.76) TCGA-4Z-AA7W-01 8 71069188 71069188 G C NCOA2 Nonsense_Mutation p.S471* 0.25 TCGA-4Z-AA7W-01 8 73934520 73934520 G A TERF1 Missense_Mutation p.D203N 0.08 deleterious(0) probably_damaging(0.95) TCGA-4Z-AA7W-01 8 87660077 87660077 G A CNGB3 Silent p.Y314Y 0.34 TCGA-4Z-AA7W-01 8 99961333 99961333 G T OSR2 Missense_Mutation p.M51I 0.32 deleterious_low_confidence(0.01) benign(0) TCGA-4Z-AA7W-01 8 99961433 99961433 T G OSR2 Missense_Mutation p.F85V 0.22 deleterious_low_confidence(0.02) benign(0) TCGA-4Z-AA7W-01 9 101068556 101068556 G A GABBR2 Silent p.I692I 0.43 TCGA-4Z-AA7W-01 9 116083807 116083807 C T WDR31 Missense_Mutation p.E208K 0.39 deleterious(0) probably_damaging(0.954) TCGA-4Z-AA7W-01 9 125512171 125512171 C G OR1L6 Silent p.L15L 0.17 TCGA-4Z-AA7W-01 9 130501076 130501076 G A SH2D3C Silent p.L844L 0.17 TCGA-4Z-AA7W-01 9 131345412 131345412 C T SPTAN1 Silent p.L621L 0.37 TCGA-4Z-AA7W-01 9 131346585 131346585 C G SPTAN1 Missense_Mutation p.Q740E 0.37 tolerated(1) benign(0.029) TCGA-4Z-AA7W-01 9 131351159 131351159 G C SPTAN1 Missense_Mutation p.K981N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7W-01 9 131356505 131356505 G C SPTAN1 Missense_Mutation p.K1089N 0.44 deleterious(0) possibly_damaging(0.62) TCGA-4Z-AA7W-01 9 133948124 133948124 G A LAMC3 Missense_Mutation p.G1107R 0.40 tolerated(0.41) benign(0.009) TCGA-4Z-AA7W-01 9 135171384 135171384 G C SETX Missense_Mutation p.S1994C 0.30 tolerated(0.2) probably_damaging(0.95) TCGA-4Z-AA7W-01 9 140327695 140327695 G C NOXA1 Missense_Mutation p.E297Q 0.25 tolerated(0.18) probably_damaging(0.933) TCGA-4Z-AA7W-01 9 14842624 14842624 G C FREM1 Silent p.L476L 0.31 TCGA-4Z-AA7W-01 9 17394829 17394829 A C CNTLN Missense_Mutation p.N793H 0.36 tolerated(0.13) possibly_damaging(0.506) TCGA-4Z-AA7W-01 9 19096709 19096709 G C HAUS6 Missense_Mutation p.Q63E 0.22 tolerated(0.32) benign(0.005) TCGA-4Z-AA7W-01 9 19328082 19328082 G C DENND4C Missense_Mutation p.L725F 0.26 tolerated(0.09) benign(0.115) TCGA-4Z-AA7W-01 9 2084139 2084139 C G SMARCA2 Missense_Mutation p.F823L 0.23 benign(0.418) TCGA-4Z-AA7W-01 9 21384683 21384683 G A IFNA2 3'UTR 0.54 TCGA-4Z-AA7W-01 9 21441057 21441057 G C IFNA1 Missense_Mutation p.R184T 0.38 deleterious(0.01) benign(0.037) TCGA-4Z-AA7W-01 9 27284864 27284864 C G EQTN Missense_Mutation p.E248Q 0.24 tolerated(0.07) benign(0.176) TCGA-4Z-AA7W-01 9 33385131 33385152 ATACGGTTATCCCGTGGTCTTC - AQP7 Frame_Shift_Del p.E294Cfs*19 0.09 TCGA-4Z-AA7W-01 9 6256100 6256100 C A IL33 Missense_Mutation p.L249M 0.38 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 9 6620279 6620279 G A GLDC Silent p.S125S 0.50 TCGA-4Z-AA7W-01 9 77448962 77448962 G A TRPM6 Silent p.I207I 0.37 TCGA-4Z-AA7W-01 9 84200568 84200568 G A TLE1 Silent p.I660I 0.35 TCGA-4Z-AA7W-01 9 88842267 88842267 G C C9orf153 Missense_Mutation p.S96C 0.27 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-4Z-AA7W-01 9 91934652 91934652 G A SECISBP2 Missense_Mutation p.C41Y 0.44 deleterious(0.03) benign(0.379) TCGA-4Z-AA7W-01 9 93624597 93624597 G C SYK Missense_Mutation p.E230Q 0.24 deleterious(0.01) benign(0.133) TCGA-4Z-AA7W-01 9 95482606 95482606 C G BICD2 Missense_Mutation p.Q346H 0.23 tolerated(0.08) probably_damaging(0.996) TCGA-4Z-AA7W-01 X 100871400 100871400 C T ARMCX6 Missense_Mutation p.E71K 0.34 tolerated(0.32) benign(0.028) TCGA-4Z-AA7W-01 X 122561868 122561868 C G GRIA3 Missense_Mutation p.L652V 0.50 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 X 123780661 123780661 C T TENM1 Splice_Site p.X527_splice 0.59 TCGA-4Z-AA7W-01 X 129041400 129041400 G C UTP14A Missense_Mutation p.L28F 0.22 deleterious(0.04) possibly_damaging(0.865) TCGA-4Z-AA7W-01 X 129042093 129042093 G C UTP14A Missense_Mutation p.D54H 0.26 deleterious(0.03) possibly_damaging(0.906) TCGA-4Z-AA7W-01 X 12939373 12939373 G C TLR8 Silent p.L738L 0.41 TCGA-4Z-AA7W-01 X 136651210 136651210 C T ZIC3 Missense_Mutation p.R404C 0.39 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7W-01 X 13727081 13727081 G C RAB9A Silent p.L72L 0.19 TCGA-4Z-AA7W-01 X 152159941 152159941 C A PNMA5 Nonsense_Mutation p.E68* 0.20 TCGA-4Z-AA7W-01 X 153201000 153201000 A - RENBP Frame_Shift_Del p.F369Lfs*4 0.14 TCGA-4Z-AA7W-01 X 154489964 154489964 G A RAB39B 3'UTR 0.45 TCGA-4Z-AA7W-01 X 30852246 30852246 C G TAB3 Missense_Mutation p.E638Q 0.15 tolerated(0.63) benign(0.007) TCGA-4Z-AA7W-01 X 36091315 36091315 C G CHDC2 Missense_Mutation p.H84D 0.22 tolerated(1) benign(0) TCGA-4Z-AA7W-01 X 44922734 44922735 - A KDM6A Frame_Shift_Ins p.L533Tfs*20 0.37 TCGA-4Z-AA7W-01 X 48933319 48933319 C A WDR45 Missense_Mutation p.G205C 0.19 deleterious(0) probably_damaging(1) TCGA-4Z-AA7W-01 X 48933320 48933320 T G WDR45 Silent p.P204P 0.19 TCGA-4Z-AA7W-01 X 54777689 54777689 G A ITIH6 Silent p.I1159I 0.46 TCGA-4Z-AA7Y-01 10 118386390 118386390 G A PNLIPRP2 Missense_Mutation p.E116K 0.53 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA7Y-01 10 11973706 11973706 C T UPF2 Missense_Mutation p.E1208K 0.31 deleterious(0) possibly_damaging(0.678) TCGA-4Z-AA7Y-01 10 11973715 11973715 C T UPF2 Missense_Mutation p.E1205K 0.36 deleterious(0.05) benign(0.424) TCGA-4Z-AA7Y-01 10 11973776 11973776 C A UPF2 Missense_Mutation p.K1184N 0.34 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA7Y-01 10 120353728 120353728 G A PRLHR Silent p.R343R 0.33 TCGA-4Z-AA7Y-01 10 124740185 124740185 C T PSTK Missense_Mutation p.L64F 0.47 tolerated(0.7) benign(0.009) TCGA-4Z-AA7Y-01 10 13275552 13275552 C G UCMA Missense_Mutation p.R69T 0.41 tolerated(0.09) possibly_damaging(0.479) TCGA-4Z-AA7Y-01 10 13717041 13717041 G A FRMD4A Missense_Mutation p.S374F 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-4Z-AA7Y-01 10 18250698 18250698 C G SLC39A12 Silent p.L150L 0.24 TCGA-4Z-AA7Y-01 10 29777686 29777686 C G SVIL Splice_Site p.X1398_splice 0.46 TCGA-4Z-AA7Y-01 10 51754160 51754160 G C AGAP6 Missense_Mutation p.E123Q 0.17 tolerated_low_confidence(0.2) benign(0.11) TCGA-4Z-AA7Y-01 10 92654594 92654594 G C RPP30 Missense_Mutation p.M165I 0.36 tolerated(0.09) benign(0.012) TCGA-4Z-AA7Y-01 10 94816726 94816726 G A EXOC6 Missense_Mutation p.D739N 0.47 deleterious(0) possibly_damaging(0.816) TCGA-4Z-AA7Y-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.48 TCGA-4Z-AA7Y-01 11 112084477 112084477 C T BCO2 Nonsense_Mutation p.R409* 0.38 TCGA-4Z-AA7Y-01 11 116661644 116661644 C - APOA5 Frame_Shift_Del p.E101Rfs*3 0.32 TCGA-4Z-AA7Y-01 11 118968195 118968195 G A DPAGT1 Silent p.F328F 0.41 TCGA-4Z-AA7Y-01 11 11955432 11955432 G T USP47 Nonsense_Mutation p.E539* 0.39 TCGA-4Z-AA7Y-01 11 125281668 125281668 G A PKNOX2 Silent p.L281L 0.51 TCGA-4Z-AA7Y-01 11 18195535 18195535 G T MRGPRX4 Silent p.L244L 0.36 TCGA-4Z-AA7Y-01 11 3047943 3047943 C G CARS Missense_Mutation p.E372D 0.45 tolerated(0.14) probably_damaging(0.999) TCGA-4Z-AA7Y-01 11 32954998 32954998 G C QSER1 Missense_Mutation p.D603H 0.48 deleterious(0) possibly_damaging(0.633) TCGA-4Z-AA7Y-01 11 36422804 36422804 C T PRR5L Silent p.L45L 0.55 TCGA-4Z-AA7Y-01 11 44165803 44165803 A G EXT2 Intron 0.35 TCGA-4Z-AA7Y-01 11 55406659 55406659 A T OR4P4 Missense_Mutation p.I276F 0.41 deleterious(0.04) benign(0.151) TCGA-4Z-AA7Y-01 11 60718865 60718865 G A SLC15A3 Silent p.T53T 0.33 TCGA-4Z-AA7Y-01 11 62288749 62288749 G A AHNAK Silent p.I4380I 0.37 TCGA-4Z-AA7Y-01 11 62289301 62289301 G A AHNAK Silent p.F4196F 0.46 TCGA-4Z-AA7Y-01 11 62389402 62389402 C T B3GAT3 Silent p.K6K 0.40 TCGA-4Z-AA7Y-01 11 63682203 63682203 C T RCOR2 Nonsense_Mutation p.W135* 0.41 TCGA-4Z-AA7Y-01 11 65009482 65009482 G A SLC22A20 RNA 0.38 TCGA-4Z-AA7Y-01 11 67074892 67074892 C G SSH3 Missense_Mutation p.S196C 0.48 deleterious(0) benign(0.157) TCGA-4Z-AA7Y-01 11 70189984 70189984 C G PPFIA1 Missense_Mutation p.I639M 0.21 deleterious(0) probably_damaging(0.974) TCGA-4Z-AA7Y-01 11 71249124 71249124 G C KRTAP5-8 Missense_Mutation p.G8A 0.44 unknown(0) TCGA-4Z-AA7Y-01 11 78285490 78285490 G A NARS2 Missense_Mutation p.S15F 0.47 deleterious_low_confidence(0) benign(0.03) TCGA-4Z-AA7Y-01 11 8720889 8720889 G A ST5 Silent p.F923F 0.24 TCGA-4Z-AA7Y-01 11 89936511 89936511 G A CHORDC1 Missense_Mutation p.P252S 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-4Z-AA7Y-01 11 89944481 89944481 T C CHORDC1 Missense_Mutation p.D112G 0.37 deleterious(0) benign(0.016) TCGA-4Z-AA7Y-01 11 9091016 9091016 G T SCUBE2 Missense_Mutation p.H182N 0.51 deleterious(0.03) benign(0.167) TCGA-4Z-AA7Y-01 12 110930913 110930913 C G VPS29 Missense_Mutation p.D111H 0.39 deleterious(0) probably_damaging(0.911) TCGA-4Z-AA7Y-01 12 111348842 111348842 C G MYL2 3'UTR 0.31 TCGA-4Z-AA7Y-01 12 120210571 120210571 C T CIT Intron 0.39 TCGA-4Z-AA7Y-01 12 120210636 120210636 C G CIT Missense_Mutation p.E674Q 0.41 tolerated(0.2) benign(0.264) TCGA-4Z-AA7Y-01 12 131297565 131297565 C G STX2 Missense_Mutation p.E73Q 0.46 tolerated(0.14) benign(0.033) TCGA-4Z-AA7Y-01 12 133502276 133502276 C G ZNF605 Missense_Mutation p.E568Q 0.38 tolerated(0.12) probably_damaging(0.912) TCGA-4Z-AA7Y-01 12 16048417 16048417 C T STRAP Missense_Mutation p.H209Y 0.45 tolerated(0.9) benign(0) TCGA-4Z-AA7Y-01 12 21981961 21981961 T - ABCC9 Frame_Shift_Del p.E1200Dfs*2 0.33 TCGA-4Z-AA7Y-01 12 2983569 2983569 C T FOXM1 Missense_Mutation p.E26K 0.47 tolerated(0.41) benign(0.004) TCGA-4Z-AA7Y-01 12 4920483 4920483 G A KCNA6 Missense_Mutation p.G426R 0.32 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Y-01 12 50385807 50385807 G A RACGAP1 Missense_Mutation p.S563L 0.32 tolerated(0.07) benign(0.231) TCGA-4Z-AA7Y-01 12 56812008 56812008 C T TIMELESS Missense_Mutation p.D1122N 0.23 tolerated_low_confidence(0.47) benign(0.001) TCGA-4Z-AA7Y-01 12 56872853 56872853 C G GLS2 Missense_Mutation p.E173Q 0.50 tolerated(0.37) benign(0.004) TCGA-4Z-AA7Y-01 12 62749141 62749141 C T USP15 Missense_Mutation p.S267L 0.53 tolerated(0.12) benign(0.179) TCGA-4Z-AA7Y-01 12 62986438 62986438 C T MON2 Missense_Mutation p.S1688L 0.44 deleterious(0.05) benign(0.038) TCGA-4Z-AA7Y-01 12 82750926 82750926 G A CCDC59 Silent p.L93L 0.33 TCGA-4Z-AA7Y-01 13 103338486 103338486 G C METTL21C Missense_Mutation p.D230E 0.48 tolerated(0.31) probably_damaging(0.999) TCGA-4Z-AA7Y-01 13 103418774 103418774 C T TEX30 Missense_Mutation p.E221K 0.13 tolerated(0.13) benign(0.006) TCGA-4Z-AA7Y-01 13 41941641 41941641 C A NAA16 Missense_Mutation p.R536S 0.42 deleterious(0.02) probably_damaging(0.946) TCGA-4Z-AA7Y-01 13 61102651 61102651 G C TDRD3 Missense_Mutation p.R431T 0.40 deleterious(0) possibly_damaging(0.839) TCGA-4Z-AA7Y-01 13 66879110 66879110 G C PCDH9 Missense_Mutation p.Q1131E 0.38 deleterious(0.02) possibly_damaging(0.74) TCGA-4Z-AA7Y-01 13 75880499 75880499 C T TBC1D4 Missense_Mutation p.R901K 0.32 deleterious(0) probably_damaging(0.947) TCGA-4Z-AA7Y-01 14 21990918 21990918 G A SALL2 Silent p.L982L 0.18 TCGA-4Z-AA7Y-01 14 21990920 21990920 G A SALL2 Missense_Mutation p.S981F 0.18 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-4Z-AA7Y-01 14 21990924 21990924 G A SALL2 Missense_Mutation p.L980F 0.16 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-4Z-AA7Y-01 14 21990939 21990939 G A SALL2 Nonsense_Mutation p.Q975* 0.24 TCGA-4Z-AA7Y-01 14 21991244 21991244 G A SALL2 Missense_Mutation p.S873L 0.43 tolerated(0.12) benign(0.092) TCGA-4Z-AA7Y-01 14 21991760 21991760 G A SALL2 Missense_Mutation p.T701I 0.40 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 14 21991960 21991960 G A SALL2 Silent p.V634V 0.49 TCGA-4Z-AA7Y-01 14 21991988 21991988 G A SALL2 Missense_Mutation p.S625L 0.48 deleterious_low_confidence(0) benign(0.092) TCGA-4Z-AA7Y-01 14 21993001 21993001 G C SALL2 Missense_Mutation p.F287L 0.34 tolerated(0.34) probably_damaging(0.977) TCGA-4Z-AA7Y-01 14 21993086 21993086 G T SALL2 Missense_Mutation p.S259Y 0.28 tolerated(0.07) possibly_damaging(0.542) TCGA-4Z-AA7Y-01 14 21993733 21993733 G A SALL2 Silent p.F43F 0.41 TCGA-4Z-AA7Y-01 14 23395473 23395473 G A PRMT5 Missense_Mutation p.H216Y 0.43 deleterious(0.03) benign(0.106) TCGA-4Z-AA7Y-01 14 24532367 24532367 G T LRRC16B Missense_Mutation p.K915N 0.42 tolerated(0.11) benign(0.255) TCGA-4Z-AA7Y-01 14 24532638 24532638 G C LRRC16B Missense_Mutation p.E959Q 0.53 tolerated(0.17) probably_damaging(0.922) TCGA-4Z-AA7Y-01 14 24648092 24648092 G A REC8 Silent p.R390R 0.32 TCGA-4Z-AA7Y-01 14 30046429 30046429 T C PRKD1 3'UTR 0.63 TCGA-4Z-AA7Y-01 14 30068951 30068951 C T PRKD1 Missense_Mutation p.E660K 0.47 deleterious(0) possibly_damaging(0.831) TCGA-4Z-AA7Y-01 14 31598093 31598093 G A HECTD1 Missense_Mutation p.S1495F 0.55 deleterious(0) probably_damaging(0.962) TCGA-4Z-AA7Y-01 14 53386043 53386043 G C FERMT2 Silent p.L63L 0.41 TCGA-4Z-AA7Y-01 14 55169220 55169220 G A SAMD4A Missense_Mutation p.E213K 0.41 tolerated(0.16) benign(0.268) TCGA-4Z-AA7Y-01 14 60752365 60752365 G A PPM1A Silent p.V359V 0.43 TCGA-4Z-AA7Y-01 14 92548672 92548672 G C ATXN3 Silent p.L249L 0.34 TCGA-4Z-AA7Y-01 15 25429483 25429483 G A SNORD115-8 RNA 0.32 TCGA-4Z-AA7Y-01 15 25429519 25429519 G C SNORD115-8 RNA 0.34 TCGA-4Z-AA7Y-01 15 28517458 28517458 G A HERC2 Missense_Mutation p.S329F 0.10 benign(0.015) TCGA-4Z-AA7Y-01 15 40565797 40565797 G A PAK6 Missense_Mutation p.V555I 0.51 tolerated(0.17) benign(0.007) TCGA-4Z-AA7Y-01 15 40902462 40902462 C T CASC5 Missense_Mutation p.H73Y 0.40 tolerated(0.06) benign(0.01) TCGA-4Z-AA7Y-01 15 43661949 43661949 C G ZSCAN29 Missense_Mutation p.E55Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 15 64506319 64506319 G A CSNK1G1 Missense_Mutation p.S150F 0.38 deleterious(0.01) possibly_damaging(0.571) TCGA-4Z-AA7Y-01 15 65275916 65275916 G C SPG21 5'UTR 0.17 TCGA-4Z-AA7Y-01 15 72119237 72119237 G A MYO9A Missense_Mutation p.S2444F 0.31 tolerated_low_confidence(0.12) benign(0.015) TCGA-4Z-AA7Y-01 15 72190396 72190396 G A MYO9A Missense_Mutation p.S1483F 0.29 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-4Z-AA7Y-01 15 72270610 72270610 G A MYO9A Silent p.I582I 0.47 TCGA-4Z-AA7Y-01 15 75693271 75693271 C G SIN3A Missense_Mutation p.E513Q 0.38 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7Y-01 15 83346884 83346884 G A AP3B2 Silent p.N406N 0.46 TCGA-4Z-AA7Y-01 15 90784537 90784537 G C GDPGP1 Missense_Mutation p.E133Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 15 90815098 90815098 C T NGRN 3'UTR 0.51 TCGA-4Z-AA7Y-01 15 91522502 91522502 G C PRC1 Silent p.L331L 0.43 TCGA-4Z-AA7Y-01 15 91545329 91545329 G A VPS33B Silent p.L452L 0.42 TCGA-4Z-AA7Y-01 15 99459920 99459920 G A IGF1R Silent p.K672K 0.37 TCGA-4Z-AA7Y-01 16 1719033 1719033 G A CRAMP1L Silent p.L1122L 0.31 TCGA-4Z-AA7Y-01 16 2097807 2097807 C G NTHL1 Silent p.A14A 0.23 TCGA-4Z-AA7Y-01 16 23390051 23390051 C G SCNN1B Missense_Mutation p.Q477E 0.28 tolerated(0.11) benign(0.013) TCGA-4Z-AA7Y-01 16 2495528 2495528 G T CCNF Silent p.L333L 0.30 TCGA-4Z-AA7Y-01 16 28603077 28603077 G C CCDC101 3'UTR 0.26 TCGA-4Z-AA7Y-01 16 3140528 3140528 G A ZSCAN10 Missense_Mutation p.P248S 0.43 deleterious(0.03) possibly_damaging(0.642) TCGA-4Z-AA7Y-01 16 4242553 4242553 G A SRL Silent p.R341R 0.36 TCGA-4Z-AA7Y-01 16 50402640 50402640 C A BRD7 Nonsense_Mutation p.E16* 0.73 TCGA-4Z-AA7Y-01 16 51172749 51172749 C G SALL1 Missense_Mutation p.R1128S 0.42 deleterious(0) benign(0.097) TCGA-4Z-AA7Y-01 16 65038572 65038572 G A CDH11 Silent p.T67T 0.26 TCGA-4Z-AA7Y-01 16 67300006 67300006 C - SLC9A5 Frame_Shift_Del p.V700Wfs*102 0.25 TCGA-4Z-AA7Y-01 16 71509103 71509103 G A ZNF19 Silent p.L449L 0.38 TCGA-4Z-AA7Y-01 16 72992045 72992045 G A ZFHX3 Missense_Mutation p.S667L 0.31 probably_damaging(0.978) TCGA-4Z-AA7Y-01 16 72992865 72992865 G C ZFHX3 Missense_Mutation p.L394V 0.33 benign(0.002) TCGA-4Z-AA7Y-01 16 74640924 74640924 G A GLG1 Silent p.F23F 0.38 TCGA-4Z-AA7Y-01 16 90161637 90161637 G A TUBB8P7 RNA 0.12 TCGA-4Z-AA7Y-01 17 10427830 10427830 G A MYH2 Nonsense_Mutation p.Q1710* 0.35 TCGA-4Z-AA7Y-01 17 11672460 11672460 G C DNAH9 Missense_Mutation p.E2456Q 0.55 possibly_damaging(0.615) TCGA-4Z-AA7Y-01 17 1494734 1494734 C A SLC43A2 Missense_Mutation p.D254Y 0.48 deleterious(0) possibly_damaging(0.599) TCGA-4Z-AA7Y-01 17 15532388 15532388 G A TRIM16 Silent p.F412F 0.44 TCGA-4Z-AA7Y-01 17 18219530 18219530 G A SMCR8 Missense_Mutation p.D143N 0.26 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7Y-01 17 18220826 18220826 G T SMCR8 Nonsense_Mutation p.E575* 0.43 TCGA-4Z-AA7Y-01 17 21731307 21731307 G T UBBP4 Intron 0.36 TCGA-4Z-AA7Y-01 17 26851644 26851644 C T FOXN1 Missense_Mutation p.P83S 0.51 deleterious_low_confidence(0.01) benign(0.22) TCGA-4Z-AA7Y-01 17 26888587 26888587 C T PIGS Missense_Mutation p.E177K 0.26 tolerated(0.43) benign(0.145) TCGA-4Z-AA7Y-01 17 33446594 33446594 G C RAD51D Silent p.T13T 0.20 TCGA-4Z-AA7Y-01 17 3419752 3419752 G A TRPV3 Missense_Mutation p.R733W 0.41 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Y-01 17 3627240 3627240 C G GSG2 Missense_Mutation p.S4W 0.46 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-4Z-AA7Y-01 17 37563801 37563801 G C MED1 Nonsense_Mutation p.S1558* 0.30 TCGA-4Z-AA7Y-01 17 40359700 40359700 G A STAT5B Silent p.F651F 0.32 TCGA-4Z-AA7Y-01 17 41345181 41345181 G A NBR1 Missense_Mutation p.D382N 0.45 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA7Y-01 17 42477812 42477812 C T GPATCH8 Missense_Mutation p.E545K 0.57 tolerated(0.16) probably_damaging(0.978) TCGA-4Z-AA7Y-01 17 45754466 45754466 G A KPNB1 Silent p.V692V 0.20 TCGA-4Z-AA7Y-01 17 4619814 4619814 C T ARRB2 Missense_Mutation p.P90S 0.43 deleterious(0.04) benign(0.009) TCGA-4Z-AA7Y-01 17 48638959 48638959 G A CACNA1G Missense_Mutation p.E47K 0.50 deleterious(0.05) probably_damaging(0.914) TCGA-4Z-AA7Y-01 17 53045651 53045651 G C COX11 Silent p.L119L 0.24 TCGA-4Z-AA7Y-01 17 5463332 5463332 C G NLRP1 Missense_Mutation p.E228D 0.49 tolerated(0.31) benign(0.084) TCGA-4Z-AA7Y-01 17 59853901 59853901 G C BRIP1 Nonsense_Mutation p.S653* 0.44 TCGA-4Z-AA7Y-01 17 60814068 60814068 C T MARCH10 Silent p.E387E 0.35 TCGA-4Z-AA7Y-01 17 60814088 60814088 C T MARCH10 Missense_Mutation p.D381N 0.40 tolerated(0.24) benign(0.015) TCGA-4Z-AA7Y-01 17 61912094 61912094 G A SMARCD2 Silent p.L264L 0.37 TCGA-4Z-AA7Y-01 17 62892718 62892718 G C LRRC37A3 Missense_Mutation p.L220V 0.20 tolerated(0.26) benign(0.008) TCGA-4Z-AA7Y-01 17 62893414 62893414 G T LRRC37A3 5'UTR 0.57 TCGA-4Z-AA7Y-01 17 7137671 7137671 G C DVL2 5'UTR 0.22 TCGA-4Z-AA7Y-01 17 73096808 73096808 C T SLC16A5 Silent p.F350F 0.41 TCGA-4Z-AA7Y-01 17 74921105 74921105 C T MGAT5B Silent p.F372F 0.42 TCGA-4Z-AA7Y-01 17 74921111 74921111 C T MGAT5B Silent p.L374L 0.41 TCGA-4Z-AA7Y-01 17 76794517 76794517 G A USP36 Silent p.L1119L 0.46 TCGA-4Z-AA7Y-01 17 79970157 79970157 C T ASPSCR1 Nonsense_Mutation p.Q451* 0.33 TCGA-4Z-AA7Y-01 17 8141516 8141516 G A CTC1 Silent p.F160F 0.45 TCGA-4Z-AA7Y-01 17 8141558 8141558 G C CTC1 Silent p.L146L 0.38 TCGA-4Z-AA7Y-01 18 209994 209994 G A USP14 Silent p.Q396Q 0.33 TCGA-4Z-AA7Y-01 18 25570260 25570260 G C CDH2 Missense_Mutation p.Q467E 0.40 tolerated(0.88) benign(0.007) TCGA-4Z-AA7Y-01 18 72347207 72347207 C T ZNF407 Missense_Mutation p.S1411F 0.33 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 19 12776571 12776571 G A MAN2B1 Missense_Mutation p.H70Y 0.31 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Y-01 19 12978313 12978313 C G MAST1 Missense_Mutation p.S722W 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-4Z-AA7Y-01 19 13873232 13873232 G A CCDC130 Silent p.L231L 0.26 TCGA-4Z-AA7Y-01 19 14141551 14141551 G A RLN3 Missense_Mutation p.E74K 0.40 tolerated(0.44) benign(0.001) TCGA-4Z-AA7Y-01 19 1467046 1467046 G A APC2 Missense_Mutation p.R1249H 0.31 probably_damaging(0.998) TCGA-4Z-AA7Y-01 19 15784509 15784509 G A CYP4F12 Missense_Mutation p.R57Q 0.31 tolerated(0.13) benign(0.023) TCGA-4Z-AA7Y-01 19 15784510 15784510 G A CYP4F12 Silent p.R57R 0.32 TCGA-4Z-AA7Y-01 19 16000453 16000453 G C CYP4F2 Nonsense_Mutation p.S233* 0.53 TCGA-4Z-AA7Y-01 19 17081739 17081739 C T CPAMD8 Silent p.G772G 0.48 TCGA-4Z-AA7Y-01 19 17081754 17081754 G A CPAMD8 Silent p.F767F 0.47 TCGA-4Z-AA7Y-01 19 17983443 17983443 C T SLC5A5 Silent p.F105F 0.50 TCGA-4Z-AA7Y-01 19 2213555 2213555 C T DOT1L Silent p.L525L 0.44 TCGA-4Z-AA7Y-01 19 23544926 23544926 C G ZNF91 Missense_Mutation p.K285N 0.38 deleterious(0.04) possibly_damaging(0.728) TCGA-4Z-AA7Y-01 19 34302357 34302357 G A KCTD15 Missense_Mutation p.G198E 0.50 deleterious(0.04) possibly_damaging(0.889) TCGA-4Z-AA7Y-01 19 3822171 3822171 G A ZFR2 Missense_Mutation p.R467C 0.40 deleterious(0.02) possibly_damaging(0.48) TCGA-4Z-AA7Y-01 19 3964261 3964261 G A DAPK3 Silent p.F178F 0.48 TCGA-4Z-AA7Y-01 19 42341334 42341334 G C LYPD4 Missense_Mutation p.I208M 0.30 tolerated(0.15) possibly_damaging(0.577) TCGA-4Z-AA7Y-01 19 47858559 47858559 C T DHX34 Silent p.F323F 0.35 TCGA-4Z-AA7Y-01 19 51017908 51017908 G C ASPDH 5'Flank 0.50 TCGA-4Z-AA7Y-01 19 53473607 53473607 C G ZNF702P RNA 0.36 TCGA-4Z-AA7Y-01 19 55378313 55378313 C T KIR3DL2 3'UTR 0.40 TCGA-4Z-AA7Y-01 19 56153888 56153888 C T ZNF580 Missense_Mutation p.P5L 0.54 deleterious(0) unknown(0) TCGA-4Z-AA7Y-01 19 7675769 7675769 C - CAMSAP3 Frame_Shift_Del p.R363Gfs*42 0.28 TCGA-4Z-AA7Y-01 1 100342121 100342121 G C AGL Missense_Mutation p.G464A 0.27 deleterious(0.02) benign(0.043) TCGA-4Z-AA7Y-01 1 111216763 111216763 G C KCNA3 Silent p.L223L 0.38 TCGA-4Z-AA7Y-01 1 116287515 116287515 C G CASQ2 Missense_Mutation p.E85Q 0.40 deleterious(0.02) probably_damaging(0.912) TCGA-4Z-AA7Y-01 1 11808649 11808649 G T AGTRAP Nonsense_Mutation p.E116* 0.32 TCGA-4Z-AA7Y-01 1 118502025 118502025 G C WDR3 Missense_Mutation p.K929N 0.41 tolerated(0.24) benign(0.086) TCGA-4Z-AA7Y-01 1 1267054 1267054 G A TAS1R3 Missense_Mutation p.M76I 0.88 deleterious(0.02) benign(0.232) TCGA-4Z-AA7Y-01 1 1267823 1267823 G A TAS1R3 Silent p.L304L 0.75 TCGA-4Z-AA7Y-01 1 150131362 150131362 G A PLEKHO1 Missense_Mutation p.E292K 0.51 tolerated(0.62) benign(0) TCGA-4Z-AA7Y-01 1 150795736 150795736 G C ARNT Missense_Mutation p.S443C 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-4Z-AA7Y-01 1 151237991 151237991 C T PSMD4 Missense_Mutation p.P187L 0.44 deleterious(0) benign(0.339) TCGA-4Z-AA7Y-01 1 153930974 153930974 C G CRTC2 5'UTR 0.57 TCGA-4Z-AA7Y-01 1 155013944 155013944 G A DCST1 Silent p.V201V 0.27 TCGA-4Z-AA7Y-01 1 155014254 155014254 G A DCST1 Missense_Mutation p.M271I 0.21 deleterious(0) benign(0.137) TCGA-4Z-AA7Y-01 1 155015923 155015923 G A DCST1 Silent p.L370L 0.35 TCGA-4Z-AA7Y-01 1 156309505 156309505 G C TSACC 5'UTR 0.33 TCGA-4Z-AA7Y-01 1 156507105 156507105 G T IQGAP3 Missense_Mutation p.P1097Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7Y-01 1 156846341 156846341 C T NTRK1 Silent p.H594H 0.41 TCGA-4Z-AA7Y-01 1 1580613 1580613 C G CDK11B Missense_Mutation p.E172Q 0.20 probably_damaging(0.932) TCGA-4Z-AA7Y-01 1 16462198 16462199 - G EPHA2 Frame_Shift_Ins p.P461Afs*135 0.49 TCGA-4Z-AA7Y-01 1 171310776 171310776 G C FMO4 Missense_Mutation p.R492T 0.41 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Y-01 1 171310783 171310783 G A FMO4 Silent p.L494L 0.40 TCGA-4Z-AA7Y-01 1 171527147 171527147 C G PRRC2C Missense_Mutation p.Q1964E 0.51 possibly_damaging(0.542) TCGA-4Z-AA7Y-01 1 177249792 177249792 G C BRINP2 Missense_Mutation p.E494Q 0.20 tolerated(0.55) benign(0.005) TCGA-4Z-AA7Y-01 1 186370127 186370127 G A OCLM 5'UTR 0.42 TCGA-4Z-AA7Y-01 1 186646840 186646840 G A PTGS2 Nonsense_Mutation p.Q194* 0.48 TCGA-4Z-AA7Y-01 1 197614869 197614869 G A DENND1B Missense_Mutation p.S171F 0.39 deleterious(0.04) possibly_damaging(0.905) TCGA-4Z-AA7Y-01 1 222805547 222805547 G T MIA3 Missense_Mutation p.K1070N 0.31 tolerated(1) benign(0) TCGA-4Z-AA7Y-01 1 223178546 223178546 G C DISP1 Missense_Mutation p.Q1269H 0.46 tolerated_low_confidence(0.11) benign(0.281) TCGA-4Z-AA7Y-01 1 223284867 223284867 G A TLR5 Missense_Mutation p.H503Y 0.26 tolerated(0.05) possibly_damaging(0.758) TCGA-4Z-AA7Y-01 1 243675656 243675656 G A AKT3 Nonsense_Mutation p.Q442* 0.38 TCGA-4Z-AA7Y-01 1 26370796 26370796 C A SLC30A2 Missense_Mutation p.Q137H 0.81 tolerated(1) benign(0.009) TCGA-4Z-AA7Y-01 1 26801658 26801658 A G HMGN2 3'UTR 0.87 TCGA-4Z-AA7Y-01 1 29068983 29068983 C T YTHDF2 Silent p.S67S 0.38 TCGA-4Z-AA7Y-01 1 40236042 40236042 C T OXCT2 Missense_Mutation p.E296K 0.38 tolerated(0.88) benign(0.004) TCGA-4Z-AA7Y-01 1 41493814 41493814 G C SCMH1 3'UTR 0.42 TCGA-4Z-AA7Y-01 1 44713683 44713683 G A ERI3 Missense_Mutation p.P287S 0.41 tolerated(0.09) benign(0.428) TCGA-4Z-AA7Y-01 1 59922637 59922637 C T FGGY Missense_Mutation p.L187F 0.47 deleterious(0.01) benign(0.315) TCGA-4Z-AA7Y-01 1 74670560 74670560 G A FPGT Missense_Mutation p.D277N 0.43 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7Y-01 1 89616175 89616175 C G GBP7 Missense_Mutation p.D237H 0.36 deleterious(0.02) possibly_damaging(0.755) TCGA-4Z-AA7Y-01 1 89618086 89618086 C A GBP7 Nonsense_Mutation p.E164* 0.47 TCGA-4Z-AA7Y-01 1 94670623 94670624 - A ARHGAP29 Frame_Shift_Ins p.N231* 0.32 TCGA-4Z-AA7Y-01 20 17640976 17640976 C G RRBP1 Missense_Mutation p.K59N 0.54 deleterious(0) probably_damaging(0.988) TCGA-4Z-AA7Y-01 20 25262738 25262738 G A PYGB Silent p.R491R 0.42 TCGA-4Z-AA7Y-01 20 30584487 30584487 G A XKR7 Missense_Mutation p.V323I 0.55 tolerated(0.32) possibly_damaging(0.903) TCGA-4Z-AA7Y-01 20 35443605 35443605 G A SOGA1 Missense_Mutation p.S747L 0.26 deleterious(0.04) benign(0.003) TCGA-4Z-AA7Y-01 20 37356484 37356484 C G SLC32A1 Silent p.L260L 0.31 TCGA-4Z-AA7Y-01 20 44469298 44469298 C T SNX21 Silent p.I156I 0.05 TCGA-4Z-AA7Y-01 20 47991311 47991311 G C KCNB1 Silent p.L262L 0.28 TCGA-4Z-AA7Y-01 20 49354448 49354448 G C PARD6B Missense_Mutation p.E41Q 0.40 tolerated(0.39) benign(0.256) TCGA-4Z-AA7Y-01 20 50400726 50400726 G T SALL4 3'UTR 0.43 TCGA-4Z-AA7Y-01 20 50808154 50808154 C G ZFP64 Missense_Mutation p.E8Q 0.31 tolerated_low_confidence(0.41) benign(0.001) TCGA-4Z-AA7Y-01 20 57484402 57484402 C T GNAS Intron 0.35 TCGA-4Z-AA7Y-01 20 61299404 61299404 C T SLCO4A1 Missense_Mutation p.S560F 0.37 tolerated(0.69) benign(0.098) TCGA-4Z-AA7Y-01 20 8721017 8721017 G A PLCB1 Missense_Mutation p.E779K 0.34 deleterious(0) possibly_damaging(0.717) TCGA-4Z-AA7Y-01 21 33975594 33975594 G C AP000275.65 Silent p.L181L 0.27 TCGA-4Z-AA7Y-01 21 43171257 43171257 C T RIPK4 Missense_Mutation p.S208N 0.20 deleterious(0) benign(0.28) TCGA-4Z-AA7Y-01 21 43985950 43985950 C T SLC37A1 Missense_Mutation p.S412F 0.54 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7Y-01 22 19175099 19175099 C G CLTCL1 Missense_Mutation p.E1526Q 0.39 tolerated(0.13) benign(0.312) TCGA-4Z-AA7Y-01 22 20390493 20390493 G T PI4KAP1 RNA 0.44 TCGA-4Z-AA7Y-01 22 22516791 22516791 C G IGLV4-60 Missense_Mutation p.Q27E 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-4Z-AA7Y-01 22 24720350 24720350 C T SPECC1L Missense_Mutation p.R701C 0.36 deleterious(0) probably_damaging(0.964) TCGA-4Z-AA7Y-01 22 26702082 26702082 G C SEZ6L Missense_Mutation p.E496Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA7Y-01 22 30639939 30639939 C G LIF Missense_Mutation p.E104Q 0.27 tolerated(0.11) probably_damaging(0.945) TCGA-4Z-AA7Y-01 22 40831554 40831554 C G MKL1 Missense_Mutation p.L4F 0.38 deleterious(0) probably_damaging(0.986) TCGA-4Z-AA7Y-01 22 41554476 41554476 G C EP300 Missense_Mutation p.D1188H 0.42 probably_damaging(0.998) TCGA-4Z-AA7Y-01 22 41556688 41556688 G T EP300 Missense_Mutation p.E1211D 0.32 benign(0.05) TCGA-4Z-AA7Y-01 22 41985780 41985780 C T PMM1 Silent p.R10R 0.33 TCGA-4Z-AA7Y-01 22 41985781 41985781 C T PMM1 Missense_Mutation p.R10K 0.31 tolerated(0.46) benign(0.001) TCGA-4Z-AA7Y-01 22 50355455 50355455 C T PIM3 Silent p.F204F 0.36 TCGA-4Z-AA7Y-01 2 101971829 101971829 C T CREG2 Splice_Site p.X204_splice 0.28 TCGA-4Z-AA7Y-01 2 114002099 114002099 C T PAX8 Silent p.Q98Q 0.44 TCGA-4Z-AA7Y-01 2 120204434 120204434 C G SCTR Silent p.L347L 0.43 TCGA-4Z-AA7Y-01 2 131813228 131813228 G - FAM168B Frame_Shift_Del p.T66Pfs*97 0.30 TCGA-4Z-AA7Y-01 2 141458143 141458143 G A LRP1B Missense_Mutation p.L2159F 0.22 possibly_damaging(0.587) TCGA-4Z-AA7Y-01 2 160697407 160697407 G C LY75-CD302 Missense_Mutation p.L1114V 0.12 tolerated(0.34) probably_damaging(0.953) TCGA-4Z-AA7Y-01 2 168104390 168104390 C T XIRP2 Missense_Mutation p.P2163L 0.32 benign(0.009) TCGA-4Z-AA7Y-01 2 234112871 234112871 G A INPP5D Silent p.L1013L 0.29 TCGA-4Z-AA7Y-01 2 32800276 32800276 C T BIRC6 Missense_Mutation p.R4400W 0.35 probably_damaging(0.996) TCGA-4Z-AA7Y-01 2 37449607 37449607 C G CEBPZ Missense_Mutation p.E661Q 0.44 tolerated(0.27) benign(0.044) TCGA-4Z-AA7Y-01 2 49190013 49190013 C T FSHR Missense_Mutation p.M649I 0.49 tolerated(0.39) benign(0.003) TCGA-4Z-AA7Y-01 2 55898469 55898469 C T PNPT1 Missense_Mutation p.E321K 0.41 tolerated(0.92) benign(0.105) TCGA-4Z-AA7Y-01 2 64794697 64794697 C T AFTPH Missense_Mutation p.T646I 0.36 tolerated(0.11) benign(0.049) TCGA-4Z-AA7Y-01 2 74657092 74657092 C G RTKN Silent p.L206L 0.41 TCGA-4Z-AA7Y-01 2 74785901 74785901 G T M1AP Missense_Mutation p.S512Y 0.49 deleterious(0.04) benign(0.165) TCGA-4Z-AA7Y-01 2 79350055 79350055 G A REG1A Missense_Mutation p.C137Y 0.38 deleterious(0.03) probably_damaging(0.981) TCGA-4Z-AA7Y-01 2 97526811 97526811 G A SEMA4C Missense_Mutation p.S685L 0.38 tolerated(0.47) benign(0.164) TCGA-4Z-AA7Y-01 3 100467235 100467235 G A TFG Missense_Mutation p.G355R 0.35 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-4Z-AA7Y-01 3 10413652 10413652 C G ATP2B2 Missense_Mutation p.K500N 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA7Y-01 3 108788542 108788542 C T MORC1 Missense_Mutation p.R251K 0.45 tolerated(0.23) benign(0.038) TCGA-4Z-AA7Y-01 3 111319620 111319620 G A CD96 Missense_Mutation p.E332K 0.42 deleterious(0.02) benign(0.062) TCGA-4Z-AA7Y-01 3 111319745 111319745 G C CD96 Missense_Mutation p.K373N 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-4Z-AA7Y-01 3 124560236 124560236 G C ITGB5 Silent p.V258V 0.39 TCGA-4Z-AA7Y-01 3 133672601 133672601 G C SLCO2A1 Missense_Mutation p.I210M 0.53 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA7Y-01 3 1425080 1425080 G T CNTN6 Silent p.V835V 0.06 TCGA-4Z-AA7Y-01 3 15064803 15064803 G A NR2C2 Missense_Mutation p.R237K 0.43 tolerated(0.53) benign(0.065) TCGA-4Z-AA7Y-01 3 151163992 151163992 C T IGSF10 Silent p.V1259V 0.41 TCGA-4Z-AA7Y-01 3 158539855 158539855 C T MFSD1 Missense_Mutation p.L384F 0.46 tolerated(0.73) benign(0.017) TCGA-4Z-AA7Y-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.60 deleterious(0.02) probably_damaging(0.959) TCGA-4Z-AA7Y-01 3 178936092 178936092 A G PIK3CA Missense_Mutation p.E545G 0.62 deleterious(0.01) probably_damaging(0.989) TCGA-4Z-AA7Y-01 3 178948117 178948117 G A PIK3CA Silent p.V963V 0.43 TCGA-4Z-AA7Y-01 3 185775224 185775224 C G ETV5 Missense_Mutation p.E343Q 0.41 deleterious(0) possibly_damaging(0.904) TCGA-4Z-AA7Y-01 3 194365379 194365379 C T LSG1 Missense_Mutation p.E574K 0.50 tolerated(0.67) benign(0.004) TCGA-4Z-AA7Y-01 3 197616338 197616338 C T IQCG 3'UTR 0.30 TCGA-4Z-AA7Y-01 3 25639739 25639739 G C TOP2B 3'UTR 0.50 TCGA-4Z-AA7Y-01 3 32491040 32491040 G C CMTM7 Missense_Mutation p.G143A 0.22 tolerated(0.2) benign(0.433) TCGA-4Z-AA7Y-01 3 38966937 38966937 G A SCN11A Silent p.F227F 0.42 TCGA-4Z-AA7Y-01 3 4732894 4732894 G A ITPR1 Missense_Mutation p.E1284K 0.44 deleterious(0) possibly_damaging(0.69) TCGA-4Z-AA7Y-01 3 48215776 48215776 C T CDC25A Missense_Mutation p.E310K 0.66 tolerated(0.78) benign(0.217) TCGA-4Z-AA7Y-01 3 49397710 49397710 C T RHOA Missense_Mutation p.E172K 0.49 deleterious(0.05) benign(0.251) TCGA-4Z-AA7Y-01 3 52412693 52412693 C G DNAH1 Missense_Mutation p.S2425C 0.39 probably_damaging(0.932) TCGA-4Z-AA7Y-01 3 52812408 52812408 C T ITIH1 Missense_Mutation p.S64F 0.38 deleterious(0) possibly_damaging(0.78) TCGA-4Z-AA7Y-01 3 7188325 7188325 G A GRM7 Missense_Mutation p.E236K 0.34 deleterious(0) possibly_damaging(0.579) TCGA-4Z-AA7Y-01 3 85961540 85961540 G C CADM2 Missense_Mutation p.E176Q 0.31 tolerated(0.44) benign(0.03) TCGA-4Z-AA7Y-01 3 9780858 9780858 G C BRPF1 Missense_Mutation p.E259Q 0.31 tolerated(0.09) probably_damaging(0.985) TCGA-4Z-AA7Y-01 3 99895254 99895254 C T CMSS1 Missense_Mutation p.P251S 0.50 deleterious(0.01) probably_damaging(0.922) TCGA-4Z-AA7Y-01 4 106156375 106156375 C G TET2 Missense_Mutation p.L426V 0.38 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-4Z-AA7Y-01 4 143114262 143114262 T C INPP4B Missense_Mutation p.R387G 0.44 deleterious(0) benign(0.301) TCGA-4Z-AA7Y-01 4 153691876 153691876 C T TIGD4 Nonsense_Mutation p.W94* 0.32 TCGA-4Z-AA7Y-01 4 155254107 155254107 C T DCHS2 Missense_Mutation p.E586K 0.31 deleterious(0.02) possibly_damaging(0.449) TCGA-4Z-AA7Y-01 4 162463736 162463736 C T FSTL5 Silent p.L375L 0.50 TCGA-4Z-AA7Y-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.97 deleterious(0.01) possibly_damaging(0.594) TCGA-4Z-AA7Y-01 4 2661732 2661732 C T FAM193A Nonsense_Mutation p.Q275* 0.18 TCGA-4Z-AA7Y-01 4 2664578 2664578 G T FAM193A Nonsense_Mutation p.E296* 0.77 TCGA-4Z-AA7Y-01 4 3318219 3318219 G A RGS12 Missense_Mutation p.D108N 0.08 tolerated(0.1) probably_damaging(0.992) TCGA-4Z-AA7Y-01 4 3318389 3318389 G A RGS12 Silent p.L164L 0.08 TCGA-4Z-AA7Y-01 4 3318510 3318510 G A RGS12 Missense_Mutation p.D205N 0.09 tolerated(0.13) benign(0.012) TCGA-4Z-AA7Y-01 4 3318690 3318690 G T RGS12 Nonsense_Mutation p.E265* 0.07 TCGA-4Z-AA7Y-01 4 3318695 3318695 G A RGS12 Silent p.Q266Q 0.07 TCGA-4Z-AA7Y-01 4 3318746 3318746 G C RGS12 Silent p.L283L 0.07 TCGA-4Z-AA7Y-01 4 3318788 3318788 G A RGS12 Silent p.E297E 0.09 TCGA-4Z-AA7Y-01 4 3318866 3318866 G C RGS12 Silent p.G323G 0.07 TCGA-4Z-AA7Y-01 4 3318924 3318924 G A RGS12 Missense_Mutation p.D343N 0.08 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7Y-01 4 36230840 36230840 G T ARAP2 Nonsense_Mutation p.S90* 0.35 TCGA-4Z-AA7Y-01 4 39255569 39255569 C G WDR19 Missense_Mutation p.L974V 0.41 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA7Y-01 4 70080532 70080532 C T UGT2B11 5'Flank 0.43 TCGA-4Z-AA7Y-01 4 74005953 74005953 C T ANKRD17 Missense_Mutation p.D794N 0.41 benign(0.084) TCGA-4Z-AA7Y-01 4 75040285 75040285 G A MTHFD2L Missense_Mutation p.R69Q 0.37 tolerated(0.88) benign(0.019) TCGA-4Z-AA7Y-01 4 83795846 83795846 G A SEC31A Missense_Mutation p.S186L 0.40 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA7Y-01 4 84352867 84352867 C G HELQ Missense_Mutation p.E749Q 0.35 tolerated(0.07) benign(0.022) TCGA-4Z-AA7Y-01 4 88902624 88902624 C T SPP1 Intron 0.33 TCGA-4Z-AA7Y-01 5 130846088 130846088 G A RAPGEF6 Nonsense_Mutation p.R242* 0.51 TCGA-4Z-AA7Y-01 5 138723536 138723536 C T MZB1 Missense_Mutation p.R163Q 0.35 tolerated(0.65) benign(0.012) TCGA-4Z-AA7Y-01 5 140209296 140209296 G A PCDHA6 Silent p.A540A 0.52 TCGA-4Z-AA7Y-01 5 140720872 140720872 G A PCDHGA2 Silent p.T778T 0.38 TCGA-4Z-AA7Y-01 5 140735623 140735623 G C PCDHGA4 Missense_Mutation p.D286H 0.52 tolerated_low_confidence(0.31) benign(0.043) TCGA-4Z-AA7Y-01 5 140794190 140794190 C A PCDHGA10 Missense_Mutation p.P483Q 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.869) TCGA-4Z-AA7Y-01 5 145969708 145969708 C T PPP2R2B Silent p.S381S 0.40 TCGA-4Z-AA7Y-01 5 14745976 14745976 C T ANKH Intron 0.22 TCGA-4Z-AA7Y-01 5 14746057 14746057 C G ANKH Missense_Mutation p.L279F 0.13 deleterious(0.01) benign(0.154) TCGA-4Z-AA7Y-01 5 148388496 148388496 C G SH3TC2 Silent p.L1132L 0.41 TCGA-4Z-AA7Y-01 5 154291355 154291355 G A GEMIN5 Missense_Mutation p.S700L 0.37 tolerated(0.07) possibly_damaging(0.685) TCGA-4Z-AA7Y-01 5 157166350 157166350 G T THG1L Nonsense_Mutation p.E253* 0.37 TCGA-4Z-AA7Y-01 5 16763858 16763858 G C MYO10 Missense_Mutation p.H445D 0.09 deleterious(0.01) benign(0.224) TCGA-4Z-AA7Y-01 5 167674091 167674091 G C TENM2 Missense_Mutation p.L2049F 0.42 deleterious(0) probably_damaging(0.964) TCGA-4Z-AA7Y-01 5 170160900 170160900 G C KCNIP1 Missense_Mutation p.E212Q 0.35 deleterious(0.04) probably_damaging(0.996) TCGA-4Z-AA7Y-01 5 45353208 45353208 C A HCN1 Silent p.L457L 0.37 TCGA-4Z-AA7Y-01 5 5463636 5463636 C T KIAA0947 Nonsense_Mutation p.Q1397* 0.77 TCGA-4Z-AA7Y-01 5 87493535 87493535 C T TMEM161B Silent p.V379V 0.34 TCGA-4Z-AA7Y-01 5 98194065 98194065 G A CHD1 Missense_Mutation p.H1536Y 0.38 tolerated(0.16) benign(0.011) TCGA-4Z-AA7Y-01 6 105192072 105192072 C T HACE1 Missense_Mutation p.E826K 0.44 deleterious(0.01) benign(0.265) TCGA-4Z-AA7Y-01 6 111696221 111696221 G A REV3L Missense_Mutation p.L1113F 0.36 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 6 116837021 116837021 G C FAM26E Missense_Mutation p.E267Q 0.42 tolerated(0.6) benign(0.005) TCGA-4Z-AA7Y-01 6 127440300 127440300 G C RSPO3 5'UTR 0.51 TCGA-4Z-AA7Y-01 6 130761908 130761908 G A TMEM200A Missense_Mutation p.R114H 0.47 tolerated(0.06) benign(0.002) TCGA-4Z-AA7Y-01 6 166845910 166845910 C T RPS6KA2 Silent p.P475P 0.36 TCGA-4Z-AA7Y-01 6 168227181 168227181 C G MLLT4 5'Flank 0.47 TCGA-4Z-AA7Y-01 6 27419943 27419943 C T ZNF184 Silent p.L465L 0.48 TCGA-4Z-AA7Y-01 6 28195076 28195076 C G ZSCAN9 Missense_Mutation p.R72G 0.36 deleterious(0) possibly_damaging(0.65) TCGA-4Z-AA7Y-01 6 30632928 30632928 G C DHX16 Missense_Mutation p.Q349E 0.35 tolerated(0.89) unknown(0) TCGA-4Z-AA7Y-01 6 36981479 36981479 G C FGD2 Missense_Mutation p.E208Q 0.35 deleterious(0.02) probably_damaging(0.923) TCGA-4Z-AA7Y-01 6 36981875 36981875 G C FGD2 Missense_Mutation p.Q274H 0.45 tolerated(0.07) probably_damaging(0.933) TCGA-4Z-AA7Y-01 6 36990108 36990108 C G FGD2 Missense_Mutation p.L474V 0.19 deleterious(0.03) possibly_damaging(0.772) TCGA-4Z-AA7Y-01 6 43596784 43596784 G A GTPBP2 Missense_Mutation p.P39L 0.53 deleterious_low_confidence(0.04) benign(0) TCGA-4Z-AA7Y-01 6 44217154 44217154 C A HSP90AB1 Nonsense_Mutation p.S63* 0.44 TCGA-4Z-AA7Y-01 6 46684726 46684726 C T PLA2G7 Missense_Mutation p.D73N 0.35 tolerated(0.15) benign(0.009) TCGA-4Z-AA7Y-01 6 47646742 47646742 G T GPR111 Missense_Mutation p.D115Y 0.40 deleterious(0) benign(0.405) TCGA-4Z-AA7Y-01 6 74183360 74183360 G A MTO1 Missense_Mutation p.E270K 0.41 tolerated(0.34) benign(0.024) TCGA-4Z-AA7Y-01 6 75893674 75893674 G A COL12A1 Missense_Mutation p.S395L 0.42 benign(0.027) TCGA-4Z-AA7Y-01 6 76564892 76564892 T C MYO6 Missense_Mutation p.L372S 0.50 deleterious(0) unknown(0) TCGA-4Z-AA7Y-01 6 83848121 83848121 G C DOPEY1 Missense_Mutation p.E1454Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 7 102087367 102087367 C T ORAI2 Silent p.F211F 0.30 TCGA-4Z-AA7Y-01 7 102212988 102212988 C G POLR2J3 5'Flank 0.09 TCGA-4Z-AA7Y-01 7 124532431 124532431 G A POT1 Missense_Mutation p.P5S 0.41 tolerated(0.23) benign(0.004) TCGA-4Z-AA7Y-01 7 134254236 134254236 G C AKR1B15 Silent p.L130L 0.48 TCGA-4Z-AA7Y-01 7 136700977 136700977 C T CHRM2 Silent p.L455L 0.45 TCGA-4Z-AA7Y-01 7 140449096 140449096 G A BRAF Silent p.N661N 0.37 TCGA-4Z-AA7Y-01 7 143095510 143095510 C T EPHA1 Silent p.V456V 0.41 TCGA-4Z-AA7Y-01 7 151699799 151699799 G A GALNTL5 Missense_Mutation p.G220E 0.44 deleterious(0) probably_damaging(1) TCGA-4Z-AA7Y-01 7 27149875 27149875 G T HOXA3 Missense_Mutation p.Q129K 0.55 tolerated(1) benign(0.042) TCGA-4Z-AA7Y-01 7 44100407 44100407 G A DBNL Silent p.E404E 0.43 TCGA-4Z-AA7Y-01 7 50450406 50450406 G A IKZF1 Splice_Site p.X197_splice 0.57 TCGA-4Z-AA7Y-01 7 5680959 5680959 C T RNF216 Silent p.G736G 0.48 TCGA-4Z-AA7Y-01 7 66420594 66420594 G T TMEM248 3'UTR 0.39 TCGA-4Z-AA7Y-01 7 74004222 74004222 G T GTF2IRD1 Missense_Mutation p.R820L 0.29 deleterious(0) benign(0) TCGA-4Z-AA7Y-01 7 83095819 83095819 G A SEMA3E Silent p.I145I 0.32 TCGA-4Z-AA7Y-01 8 139610971 139610971 T C COL22A1 Silent p.P1452P 0.51 TCGA-4Z-AA7Y-01 8 143996651 143996651 C G CYP11B2 Missense_Mutation p.E136Q 0.20 deleterious(0.05) possibly_damaging(0.58) TCGA-4Z-AA7Y-01 8 144899771 144899771 G A PUF60 Silent p.I333I 0.39 TCGA-4Z-AA7Y-01 8 144899903 144899903 G C PUF60 Silent p.L289L 0.41 TCGA-4Z-AA7Y-01 8 18393285 18393285 C T PSD3 Missense_Mutation p.E1038K 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4Z-AA7Y-01 8 22213063 22213063 G A PIWIL2 3'UTR 0.27 TCGA-4Z-AA7Y-01 8 23003257 23003257 G A TNFRSF10D Silent p.V220V 0.35 TCGA-4Z-AA7Y-01 8 37692828 37692828 C G GPR124 Missense_Mutation p.P582R 0.19 tolerated(0.63) benign(0.002) TCGA-4Z-AA7Y-01 8 37729271 37729271 C T RAB11FIP1 Missense_Mutation p.E1017K 0.33 tolerated_low_confidence(0.57) benign(0.001) TCGA-4Z-AA7Y-01 8 48648040 48648040 C T SPIDR 3'UTR 0.43 TCGA-4Z-AA7Y-01 8 51415412 51415412 C G SNTG1 Silent p.L146L 0.27 TCGA-4Z-AA7Y-01 8 63936720 63936720 C G GGH Missense_Mutation p.Q175H 0.20 tolerated(0.09) benign(0.005) TCGA-4Z-AA7Y-01 8 6782355 6782355 T C DEFA6 Silent p.R96R 0.46 TCGA-4Z-AA7Y-01 8 70476335 70476335 G T SULF1 Missense_Mutation p.R42L 0.37 deleterious(0) probably_damaging(0.959) TCGA-4Z-AA7Y-01 8 73921284 73921284 G A TERF1 Missense_Mutation p.E55K 0.56 tolerated_low_confidence(0.16) benign(0.001) TCGA-4Z-AA7Y-01 8 8185424 8185424 G C SGK223 Silent p.L956L 0.52 TCGA-4Z-AA7Y-01 8 8185489 8185489 G A SGK223 Nonsense_Mutation p.Q935* 0.45 TCGA-4Z-AA7Y-01 9 135798773 135798774 AT - TSC1 Frame_Shift_Del p.I157Ffs*60 0.42 TCGA-4Z-AA7Y-01 9 88938537 88938537 C G ZCCHC6 Missense_Mutation p.E710Q 0.76 deleterious_low_confidence(0.01) benign(0.045) TCGA-4Z-AA7Y-01 9 88955938 88955938 G A ZCCHC6 Nonsense_Mutation p.Q373* 0.82 TCGA-4Z-AA7Y-01 9 97200693 97200693 C A HIATL1 Missense_Mutation p.S93Y 0.71 deleterious(0.03) benign(0.286) TCGA-4Z-AA7Y-01 X 107976878 107976878 A T IRS4 Nonsense_Mutation p.Y899* 0.87 TCGA-4Z-AA7Y-01 X 14910877 14910877 G A MOSPD2 Missense_Mutation p.E38K 0.88 deleterious(0.05) benign(0.009) TCGA-4Z-AA7Y-01 X 153247637 153247637 G A TMEM187 Missense_Mutation p.E42K 0.51 deleterious(0) possibly_damaging(0.891) TCGA-4Z-AA7Y-01 X 154250903 154250903 G A F8 5'UTR 0.89 TCGA-4Z-AA7Y-01 X 1585233 1585233 G A P2RY8 Silent p.A73A 0.31 TCGA-4Z-AA7Y-01 X 23398219 23398219 C G PTCHD1 Missense_Mutation p.S288C 0.87 tolerated(0.07) probably_damaging(0.998) TCGA-4Z-AA7Y-01 X 37705567 37705567 C T DYNLT3 Intron 0.86 TCGA-4Z-AA7Y-01 X 63411796 63411796 C G AMER1 Missense_Mutation p.Q457H 0.60 tolerated(0.07) possibly_damaging(0.833) TCGA-4Z-AA7Y-01 X 73069282 73069282 G A XIST RNA 0.85 TCGA-4Z-AA80-01 10 102762232 102762232 G C LZTS2 5'UTR 0.41 TCGA-4Z-AA80-01 10 13231065 13231065 C T MCM10 Missense_Mutation p.S468L 0.36 deleterious(0.02) benign(0.409) TCGA-4Z-AA80-01 10 132891344 132891344 C T TCERG1L 3'UTR 0.16 TCGA-4Z-AA80-01 10 16967615 16967615 C G CUBN Missense_Mutation p.D2144H 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-4Z-AA80-01 10 17275882 17275882 T A VIM Missense_Mutation p.S278R 0.24 deleterious(0.01) benign(0.253) TCGA-4Z-AA80-01 10 17362791 17362791 C G ST8SIA6 3'UTR 0.18 TCGA-4Z-AA80-01 10 17702518 17702518 C G STAM Missense_Mutation p.I32M 0.11 deleterious(0) probably_damaging(0.984) TCGA-4Z-AA80-01 10 18940093 18940093 C T NSUN6 Missense_Mutation p.E14K 0.37 tolerated(0.18) possibly_damaging(0.49) TCGA-4Z-AA80-01 10 27431370 27431370 G A YME1L1 Nonsense_Mutation p.R183* 0.11 TCGA-4Z-AA80-01 10 29812790 29812790 G A SVIL Missense_Mutation p.S918L 0.14 tolerated_low_confidence(0.11) benign(0.001) TCGA-4Z-AA80-01 10 29824926 29824926 C T SVIL Nonsense_Mutation p.W300* 0.36 TCGA-4Z-AA80-01 10 33510785 33510785 G A NRP1 Nonsense_Mutation p.Q382* 0.32 TCGA-4Z-AA80-01 10 35302690 35302690 C G CUL2 Missense_Mutation p.M661I 0.05 tolerated(0.17) benign(0.037) TCGA-4Z-AA80-01 10 35302719 35302719 C G CUL2 Missense_Mutation p.D652H 0.06 tolerated(0.1) benign(0.323) TCGA-4Z-AA80-01 10 35305141 35305141 C G CUL2 Missense_Mutation p.M641I 0.07 tolerated(0.92) benign(0.022) TCGA-4Z-AA80-01 10 50901984 50901984 G C C10orf53 Intron 0.12 TCGA-4Z-AA80-01 10 56077178 56077178 C G PCDH15 Missense_Mutation p.E243D 0.24 tolerated(0.38) benign(0.09) TCGA-4Z-AA80-01 10 60549181 60549181 G C BICC1 Missense_Mutation p.V254L 0.07 deleterious(0.03) benign(0.034) TCGA-4Z-AA80-01 10 60553243 60553243 G A BICC1 Splice_Site p.X350_splice 0.10 TCGA-4Z-AA80-01 10 61666071 61666071 C T CCDC6 Missense_Mutation p.G38R 0.19 tolerated_low_confidence(0.12) benign(0.242) TCGA-4Z-AA80-01 10 69959296 69959296 G A MYPN Missense_Mutation p.G1153R 0.18 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 10 70101390 70101390 C G HNRNPH3 Missense_Mutation p.S275C 0.08 deleterious(0.02) unknown(0) TCGA-4Z-AA80-01 10 71631937 71631937 C T COL13A1 Intron 0.22 TCGA-4Z-AA80-01 10 75849089 75849089 G T VCL Missense_Mutation p.K386N 0.07 tolerated(1) possibly_damaging(0.751) TCGA-4Z-AA80-01 10 76910813 76910813 G A SAMD8 Missense_Mutation p.R176Q 0.07 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA80-01 10 7798086 7798086 C T KIN Missense_Mutation p.R380K 0.14 tolerated(0.24) benign(0) TCGA-4Z-AA80-01 10 859104 859104 T C LARP4B Missense_Mutation p.E660G 0.25 deleterious(0.02) benign(0.066) TCGA-4Z-AA80-01 10 89268224 89268224 G C MINPP1 Missense_Mutation p.E257Q 0.11 deleterious(0.02) probably_damaging(0.951) TCGA-4Z-AA80-01 10 99240789 99240789 C T MMS19 Missense_Mutation p.E58K 0.18 tolerated(0.15) benign(0.045) TCGA-4Z-AA80-01 10 99329961 99329961 C T UBTD1 Missense_Mutation p.P122L 0.06 tolerated(0.23) probably_damaging(0.999) TCGA-4Z-AA80-01 11 102642783 102642783 T A MMP10 Silent p.P430P 0.43 TCGA-4Z-AA80-01 11 118245802 118245802 G C UBE4A Silent p.L443L 0.16 TCGA-4Z-AA80-01 11 118894139 118894139 G A TRAPPC4 3'UTR 0.16 TCGA-4Z-AA80-01 11 119210243 119210243 G C C1QTNF5 Missense_Mutation p.S177C 0.32 tolerated(0.07) probably_damaging(0.998) TCGA-4Z-AA80-01 11 120336053 120336053 A G ARHGEF12 Silent p.R907R 0.31 TCGA-4Z-AA80-01 11 125648651 125648651 G C PATE2 Silent p.L6L 0.09 TCGA-4Z-AA80-01 11 130066490 130066490 G A ST14 Missense_Mutation p.V417I 0.14 tolerated(0.07) possibly_damaging(0.564) TCGA-4Z-AA80-01 11 13514074 13514074 C T PTH Missense_Mutation p.D76N 0.15 tolerated(0.14) benign(0.026) TCGA-4Z-AA80-01 11 14899713 14899713 C G CYP2R1 Missense_Mutation p.M487I 0.50 tolerated(0.55) probably_damaging(0.997) TCGA-4Z-AA80-01 11 17531045 17531045 G A USH1C Missense_Mutation p.S624L 0.15 tolerated_low_confidence(0.12) benign(0.021) TCGA-4Z-AA80-01 11 18548331 18548331 C T TSG101 Missense_Mutation p.M11I 0.62 tolerated(0.37) benign(0.001) TCGA-4Z-AA80-01 11 2426092 2426092 C A TRPM5 3'UTR 0.55 TCGA-4Z-AA80-01 11 33079675 33079675 C T TCP11L1 Missense_Mutation p.P210S 0.19 deleterious(0.03) benign(0.362) TCGA-4Z-AA80-01 11 46806182 46806182 C T CKAP5 Silent p.Q670Q 0.21 TCGA-4Z-AA80-01 11 55587789 55587789 G A OR5D18 Silent p.K228K 0.22 TCGA-4Z-AA80-01 11 59189680 59189680 C T OR5A2 Silent p.V249V 0.08 TCGA-4Z-AA80-01 11 62533726 62533726 C T POLR2G Silent p.G161G 0.21 TCGA-4Z-AA80-01 11 64520631 64520631 G A PYGM Missense_Mutation p.H478Y 0.37 deleterious(0.01) possibly_damaging(0.615) TCGA-4Z-AA80-01 11 64522183 64522183 G A PYGM Silent p.F327F 0.55 TCGA-4Z-AA80-01 11 65271807 65271807 G C MALAT1 RNA 0.20 TCGA-4Z-AA80-01 11 65488224 65488224 C G RNASEH2C Missense_Mutation p.E2D 0.16 tolerated_low_confidence(0.18) benign(0.015) TCGA-4Z-AA80-01 11 66631398 66631398 G T PC Silent p.I405I 0.12 TCGA-4Z-AA80-01 11 67079357 67079357 G C SSH3 Nonstop_Mutation p.*660Sext*85 0.11 TCGA-4Z-AA80-01 11 67168209 67168209 C T PPP1CA Silent p.G134G 0.15 TCGA-4Z-AA80-01 11 68153885 68153885 C T LRP5 Missense_Mutation p.R373W 0.12 deleterious(0) probably_damaging(0.973) TCGA-4Z-AA80-01 11 68696791 68696791 C T IGHMBP2 Missense_Mutation p.H401Y 0.08 tolerated(0.2) possibly_damaging(0.85) TCGA-4Z-AA80-01 11 70170534 70170534 C G PPFIA1 Silent p.L97L 0.13 TCGA-4Z-AA80-01 11 70171038 70171038 C A PPFIA1 Missense_Mutation p.P151Q 0.13 tolerated(0.11) possibly_damaging(0.76) TCGA-4Z-AA80-01 11 72145270 72145270 G A CLPB Silent p.L83L 0.23 TCGA-4Z-AA80-01 11 73068100 73068100 C G ARHGEF17 Missense_Mutation p.L1308V 0.10 tolerated(0.07) probably_damaging(0.923) TCGA-4Z-AA80-01 11 73105599 73105599 C T RELT Missense_Mutation p.S289L 0.14 tolerated(0.12) probably_damaging(0.934) TCGA-4Z-AA80-01 11 7509387 7509387 G A OLFML1 Silent p.T53T 0.14 TCGA-4Z-AA80-01 11 77924859 77924859 A G USP35 Silent p.%3D 0.16 TCGA-4Z-AA80-01 11 78147545 78147545 C T NARS2 3'UTR 0.16 TCGA-4Z-AA80-01 11 84028143 84028143 C T DLG2 Intron 0.24 TCGA-4Z-AA80-01 11 86176223 86176223 T C ME3 Missense_Mutation p.I277V 0.53 tolerated(0.17) benign(0.304) TCGA-4Z-AA80-01 11 88780572 88780572 G A GRM5 Nonsense_Mutation p.Q157* 0.26 TCGA-4Z-AA80-01 11 88911796 88911796 G A TYR Silent p.L225L 0.08 TCGA-4Z-AA80-01 11 88911850 88911850 G T TYR Missense_Mutation p.K243N 0.08 tolerated(0.98) benign(0.002) TCGA-4Z-AA80-01 11 88911854 88911854 G A TYR Missense_Mutation p.D245N 0.08 deleterious(0.01) benign(0.014) TCGA-4Z-AA80-01 11 88911866 88911866 G T TYR Missense_Mutation p.D249Y 0.09 deleterious(0) probably_damaging(0.986) TCGA-4Z-AA80-01 12 108098457 108098457 G A PWP1 Missense_Mutation p.R337Q 0.05 tolerated(0.08) possibly_damaging(0.89) TCGA-4Z-AA80-01 12 110238531 110238531 G A TRPV4 Missense_Mutation p.R249C 0.11 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA80-01 12 110734518 110734518 C G ATP2A2 Missense_Mutation p.P147A 0.38 deleterious(0) probably_damaging(0.963) TCGA-4Z-AA80-01 12 11091682 11091682 G A TAS2R14 Missense_Mutation p.S42F 0.25 deleterious(0) possibly_damaging(0.787) TCGA-4Z-AA80-01 12 113303232 113303232 C T RPH3A Missense_Mutation p.R82C 0.37 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA80-01 12 113435517 113435517 G T OAS2 Nonsense_Mutation p.E274* 0.14 TCGA-4Z-AA80-01 12 11420837 11420837 G C PRB3 Missense_Mutation p.R116G 0.09 tolerated(0.06) unknown(0) TCGA-4Z-AA80-01 12 116534536 116534536 G A MED13L Silent p.F139F 0.16 TCGA-4Z-AA80-01 12 117158195 117158195 G A C12orf49 Missense_Mutation p.P109L 0.10 tolerated(0.26) benign(0.014) TCGA-4Z-AA80-01 12 120135563 120135563 G A CIT Missense_Mutation p.A1928V 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA80-01 12 121686468 121686468 C T CAMKK2 Missense_Mutation p.E465K 0.10 deleterious(0.03) probably_damaging(0.93) TCGA-4Z-AA80-01 12 123006798 123006798 C G RSRC2 Missense_Mutation p.D19H 0.12 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-4Z-AA80-01 12 129558797 129558797 C T TMEM132D Missense_Mutation p.E975K 0.08 deleterious(0.01) benign(0.139) TCGA-4Z-AA80-01 12 133350783 133350783 C G GOLGA3 Missense_Mutation p.E1423Q 0.12 tolerated(0.08) probably_damaging(0.999) TCGA-4Z-AA80-01 12 20854309 20854309 C T SLCO1C1 Silent p.L63L 0.42 TCGA-4Z-AA80-01 12 27075565 27075565 T C ASUN Silent p.V291V 0.52 TCGA-4Z-AA80-01 12 33538176 33538176 C T SYT10 Silent p.T376T 0.15 TCGA-4Z-AA80-01 12 49359916 49359916 C A WNT10B Nonsense_Mutation p.E378* 0.17 TCGA-4Z-AA80-01 12 49436429 49436429 C G KMT2D Splice_Site p.X1928_splice 0.34 TCGA-4Z-AA80-01 12 49436662 49436662 C T KMT2D Splice_Site p.X1882_splice 0.21 TCGA-4Z-AA80-01 12 49953082 49953082 G A MCRS1 Silent p.I376I 0.17 TCGA-4Z-AA80-01 12 57440388 57440388 C A MYO1A Missense_Mutation p.R196S 0.46 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA80-01 12 57440403 57440403 C T MYO1A Silent p.Q191Q 0.43 TCGA-4Z-AA80-01 12 57440681 57440681 G C MYO1A Missense_Mutation p.F169L 0.49 deleterious(0) possibly_damaging(0.794) TCGA-4Z-AA80-01 12 57440686 57440686 C T MYO1A Missense_Mutation p.D168N 0.48 tolerated(0.11) benign(0.344) TCGA-4Z-AA80-01 12 57441148 57441148 C T MYO1A Silent p.G123G 0.41 TCGA-4Z-AA80-01 12 57441770 57441770 C T MYO1A Intron 0.42 TCGA-4Z-AA80-01 12 57972105 57972105 C T KIF5A Missense_Mutation p.L840F 0.12 deleterious(0) probably_damaging(0.938) TCGA-4Z-AA80-01 12 58124614 58124614 G A AGAP2 Silent p.L756L 0.09 TCGA-4Z-AA80-01 12 71056365 71056365 C A PTPRR Silent p.P506P 0.27 TCGA-4Z-AA80-01 12 76740245 76740245 G C BBS10 Nonsense_Mutation p.S507* 0.08 TCGA-4Z-AA80-01 12 79685800 79685800 G A SYT1 Missense_Mutation p.D122N 0.06 tolerated(0.1) benign(0.258) TCGA-4Z-AA80-01 12 88496808 88496808 C G CEP290 Intron 0.62 TCGA-4Z-AA80-01 12 9353577 9353577 G A PZP Missense_Mutation p.S194L 0.10 deleterious(0) benign(0.286) TCGA-4Z-AA80-01 13 38211241 38211241 A G TRPC4 Silent p.H916H 0.51 TCGA-4Z-AA80-01 13 41767574 41767574 C G KBTBD7 Missense_Mutation p.D274H 0.41 deleterious(0) probably_damaging(0.961) TCGA-4Z-AA80-01 13 52972119 52972119 C A THSD1 Missense_Mutation p.C90F 0.13 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA80-01 13 61987764 61987764 C A PCDH20 Silent p.G156G 0.16 TCGA-4Z-AA80-01 13 92002932 92002932 A G MIR17HG RNA 0.72 TCGA-4Z-AA80-01 13 96272168 96272168 G A DZIP1 Missense_Mutation p.H382Y 0.22 deleterious(0.03) benign(0.248) TCGA-4Z-AA80-01 13 96277122 96277122 T C DZIP1 Missense_Mutation p.E291G 0.43 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA80-01 13 99947382 99947382 C T GPR183 Missense_Mutation p.E340K 0.20 deleterious(0.04) benign(0.23) TCGA-4Z-AA80-01 14 106173615 106173615 C T IGHA1 Missense_Mutation p.E318K 0.11 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 14 23946758 23946758 G A NGDN Missense_Mutation p.R306Q 0.17 tolerated(0.43) unknown(0) TCGA-4Z-AA80-01 14 38678915 38678915 C A SSTR1 Silent p.L107L 0.11 TCGA-4Z-AA80-01 14 47311142 47311142 G C MDGA2 Missense_Mutation p.R1024G 0.17 tolerated_low_confidence(0.07) benign(0.099) TCGA-4Z-AA80-01 14 69925089 69925089 G A SLC39A9 Missense_Mutation p.E235K 0.37 deleterious(0.03) benign(0.035) TCGA-4Z-AA80-01 14 94395292 94395292 C T FAM181A Nonsense_Mutation p.Q283* 0.56 TCGA-4Z-AA80-01 15 27777982 27777982 C T GABRG3 Silent p.F453F 0.06 TCGA-4Z-AA80-01 15 29393880 29393880 C T APBA2 Missense_Mutation p.R473C 0.27 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 15 33938626 33938626 T C RYR3 Silent p.N1280N 0.35 TCGA-4Z-AA80-01 15 40661641 40661641 C T DISP2 Missense_Mutation p.L1110F 0.18 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 15 41071757 41071757 C T DNAJC17 Missense_Mutation p.D65N 0.36 deleterious(0.01) probably_damaging(0.95) TCGA-4Z-AA80-01 15 41148208 41148208 G C SPINT1 Missense_Mutation p.K428N 0.07 tolerated(0.27) benign(0.021) TCGA-4Z-AA80-01 15 41814013 41814013 C T RPAP1 Silent p.L987L 0.29 TCGA-4Z-AA80-01 15 42678404 42678404 T C CAPN3 Missense_Mutation p.L140P 0.20 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA80-01 15 43339379 43339379 G A UBR1 Nonsense_Mutation p.Q550* 0.17 TCGA-4Z-AA80-01 15 43339380 43339380 G T UBR1 Missense_Mutation p.F549L 0.18 tolerated(0.23) possibly_damaging(0.46) TCGA-4Z-AA80-01 15 43821418 43821418 G T MAP1A Nonsense_Mutation p.E2583* 0.19 TCGA-4Z-AA80-01 15 45047418 45047418 C G TRIM69 Silent p.L109L 0.08 TCGA-4Z-AA80-01 15 45401813 45401813 C T DUOX2 Silent p.L381L 0.31 TCGA-4Z-AA80-01 15 48739011 48739011 C T FBN1 Missense_Mutation p.E1894K 0.08 possibly_damaging(0.848) TCGA-4Z-AA80-01 15 51291311 51291311 G A AP4E1 Missense_Mutation p.E983K 0.21 tolerated(0.33) benign(0.155) TCGA-4Z-AA80-01 15 55727166 55727166 C T DYX1C1 Silent p.L328L 0.19 TCGA-4Z-AA80-01 15 56387673 56387673 T G RFX7 Silent p.S751S 0.10 TCGA-4Z-AA80-01 15 65993436 65993436 T C DENND4A Missense_Mutation p.K885R 0.18 tolerated(0.89) benign(0.275) TCGA-4Z-AA80-01 15 68987595 68987595 G A CORO2B Silent p.S111S 0.47 TCGA-4Z-AA80-01 15 75111600 75111600 C T LMAN1L Silent p.T235T 0.15 TCGA-4Z-AA80-01 15 77067265 77067265 A G SCAPER Silent p.S322S 0.36 TCGA-4Z-AA80-01 15 90210391 90210391 G A PLIN1 Nonsense_Mutation p.R329* 0.15 TCGA-4Z-AA80-01 15 90633751 90633751 G C IDH2 Silent p.V111V 0.14 TCGA-4Z-AA80-01 15 92981732 92981732 C T ST8SIA2 Missense_Mutation p.S147L 0.20 probably_damaging(0.978) TCGA-4Z-AA80-01 16 1034822 1034822 C T SOX8 Silent p.I259I 0.24 TCGA-4Z-AA80-01 16 11650543 11650543 G A LITAF Missense_Mutation p.S15L 0.10 deleterious_low_confidence(0.03) benign(0.017) TCGA-4Z-AA80-01 16 19553347 19553347 C G CCP110 Missense_Mutation p.Q730E 0.28 tolerated(0.11) benign(0.086) TCGA-4Z-AA80-01 16 21069497 21069497 G A DNAH3 Silent p.V1278V 0.09 TCGA-4Z-AA80-01 16 2124333 2124333 C G TSC2 Missense_Mutation p.L830V 0.17 deleterious(0) probably_damaging(0.977) TCGA-4Z-AA80-01 16 2160559 2160559 C T PKD1 Missense_Mutation p.E1537K 0.16 benign(0.269) TCGA-4Z-AA80-01 16 29816639 29816639 C A KIF22 3'UTR 0.26 TCGA-4Z-AA80-01 16 30008169 30008169 G A INO80E Missense_Mutation p.E65K 0.09 tolerated(0.05) probably_damaging(0.979) TCGA-4Z-AA80-01 16 30016683 30016683 C T INO80E Missense_Mutation p.R219W 0.36 deleterious(0.01) benign(0.443) TCGA-4Z-AA80-01 16 30037074 30037074 G T FAM57B Missense_Mutation p.F171L 0.09 deleterious(0.01) possibly_damaging(0.761) TCGA-4Z-AA80-01 16 30528974 30528974 C A ITGAL Missense_Mutation p.P994H 0.43 deleterious(0) benign(0.285) TCGA-4Z-AA80-01 16 3080750 3080750 G A CCDC64B Nonsense_Mutation p.Q188* 0.30 TCGA-4Z-AA80-01 16 30970082 30970082 G A SETD1A Silent p.Q10Q 0.05 TCGA-4Z-AA80-01 16 53190094 53190094 A G CHD9 Silent p.G31G 0.08 TCGA-4Z-AA80-01 16 53289552 53289552 G A CHD9 Missense_Mutation p.R1357Q 0.26 probably_damaging(0.981) TCGA-4Z-AA80-01 16 53671733 53671733 C G RPGRIP1L Missense_Mutation p.E1032Q 0.16 tolerated(0.08) benign(0.056) TCGA-4Z-AA80-01 16 57290802 57290802 G C PLLP 3'UTR 0.07 TCGA-4Z-AA80-01 16 57684189 57684189 G A GPR56 5'UTR 0.13 TCGA-4Z-AA80-01 16 67914742 67914742 G A EDC4 Missense_Mutation p.G794R 0.11 tolerated(0.41) benign(0.002) TCGA-4Z-AA80-01 16 69154505 69154505 G A CHTF8 Silent p.I63I 0.52 TCGA-4Z-AA80-01 16 69726397 69726397 C G NFAT5 Missense_Mutation p.S890C 0.09 benign(0.086) TCGA-4Z-AA80-01 16 72132851 72132851 G T DHX38 Missense_Mutation p.D264Y 0.24 tolerated(0.06) benign(0.006) TCGA-4Z-AA80-01 16 72991867 72991867 G A ZFHX3 Silent p.F726F 0.19 TCGA-4Z-AA80-01 16 89349455 89349455 C A ANKRD11 Missense_Mutation p.R1165S 0.24 probably_damaging(0.989) TCGA-4Z-AA80-01 17 28758884 28758884 A T CPD Silent p.A704A 0.12 TCGA-4Z-AA80-01 17 29622897 29622897 G C OMG Silent p.L151L 0.19 TCGA-4Z-AA80-01 17 29670104 29670104 C G NF1 Silent p.L2380L 0.51 TCGA-4Z-AA80-01 17 31263431 31263431 G A TMEM98 Missense_Mutation p.D127N 0.04 deleterious(0.03) possibly_damaging(0.831) TCGA-4Z-AA80-01 17 33690124 33690124 C T SLFN11 Missense_Mutation p.V235I 0.14 tolerated(0.56) benign(0.009) TCGA-4Z-AA80-01 17 3558323 3558323 C G CTNS Missense_Mutation p.S86C 0.21 deleterious(0.02) benign(0.031) TCGA-4Z-AA80-01 17 36522197 36522197 G A SOCS7 Missense_Mutation p.R363Q 0.09 tolerated(0.45) benign(0.041) TCGA-4Z-AA80-01 17 36895328 36895328 C A PCGF2 Silent p.L103L 0.20 TCGA-4Z-AA80-01 17 37667820 37667820 G A CDK12 Missense_Mutation p.R902Q 0.07 probably_damaging(0.997) TCGA-4Z-AA80-01 17 38318275 38318275 G A CASC3 Silent p.E159E 0.07 TCGA-4Z-AA80-01 17 38345517 38345517 C T RAPGEFL1 Missense_Mutation p.S129L 0.13 tolerated(0.07) benign(0.261) TCGA-4Z-AA80-01 17 38347732 38347732 C G RAPGEFL1 Missense_Mutation p.I294M 0.20 deleterious(0) benign(0.422) TCGA-4Z-AA80-01 17 39967386 39967386 C T LEPREL4 Missense_Mutation p.E205K 0.43 deleterious(0) possibly_damaging(0.769) TCGA-4Z-AA80-01 17 41573597 41573597 G A DHX8 Missense_Mutation p.E421K 0.46 deleterious(0.04) benign(0.04) TCGA-4Z-AA80-01 17 42148546 42148546 C T G6PC3 Silent p.F71F 0.09 TCGA-4Z-AA80-01 17 42397402 42397402 C G SLC25A39 Missense_Mutation p.Q349H 0.08 tolerated(0.15) benign(0.021) TCGA-4Z-AA80-01 17 4349409 4349409 G A SPNS3 Missense_Mutation p.A157T 0.51 deleterious(0) probably_damaging(0.984) TCGA-4Z-AA80-01 17 46136162 46136162 C T NFE2L1 Missense_Mutation p.S493F 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-4Z-AA80-01 17 46673927 46673927 G A HOXB6 Missense_Mutation p.R175W 0.17 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA80-01 17 57076655 57076655 C G TRIM37 3'UTR 0.17 TCGA-4Z-AA80-01 17 58539173 58539173 G A APPBP2 Nonsense_Mutation p.Q312* 0.08 TCGA-4Z-AA80-01 17 60042595 60042595 G A MED13 Missense_Mutation p.S1539L 0.31 tolerated(0.34) benign(0.13) TCGA-4Z-AA80-01 17 60469274 60469274 G A EFCAB3 Missense_Mutation p.M133I 0.13 tolerated(0.93) benign(0.01) TCGA-4Z-AA80-01 17 62865265 62865265 G A LRRC37A3 Silent p.L976L 0.31 TCGA-4Z-AA80-01 17 64873536 64873536 G C CACNG5 Missense_Mutation p.S29T 0.28 deleterious(0.04) possibly_damaging(0.723) TCGA-4Z-AA80-01 17 66518972 66518972 C A PRKAR1A Missense_Mutation p.P85T 0.43 tolerated(0.62) benign(0.017) TCGA-4Z-AA80-01 17 71196046 71196046 G C COG1 Missense_Mutation p.S319T 0.17 tolerated(0.26) benign(0.051) TCGA-4Z-AA80-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.51 TCGA-4Z-AA80-01 17 78113545 78113545 C T EIF4A3 Missense_Mutation p.M170I 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-4Z-AA80-01 17 78350115 78350115 G A RNF213 Silent p.V4400V 0.33 TCGA-4Z-AA80-01 17 79827810 79827810 C G ARHGDIA 5'UTR 0.19 TCGA-4Z-AA80-01 17 80046914 80046914 G T FASN Missense_Mutation p.F745L 0.27 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 17 9764498 9764498 C A GLP2R Missense_Mutation p.A323E 0.53 tolerated(0.25) possibly_damaging(0.875) TCGA-4Z-AA80-01 18 28611015 28611015 G T DSC3 Nonsense_Mutation p.S93* 0.62 TCGA-4Z-AA80-01 18 31324964 31324964 G A ASXL3 Missense_Mutation p.E1718K 0.10 benign(0.154) TCGA-4Z-AA80-01 18 31463352 31463352 C A NOL4 Nonsense_Mutation p.E527* 0.28 TCGA-4Z-AA80-01 18 55024328 55024328 G T ST8SIA3 Missense_Mutation p.A163S 0.69 benign(0.141) TCGA-4Z-AA80-01 18 67531478 67531478 A G CD226 3'UTR 0.14 TCGA-4Z-AA80-01 19 13004312 13004312 G T GCDH Missense_Mutation p.G117V 0.31 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-4Z-AA80-01 19 15730300 15730300 G A AD000091.2 5'Flank 0.18 TCGA-4Z-AA80-01 19 17691560 17691560 C T COLGALT1 Missense_Mutation p.R483C 0.10 deleterious(0.01) possibly_damaging(0.773) TCGA-4Z-AA80-01 19 17875194 17875194 G A FCHO1 Missense_Mutation p.E44K 0.18 deleterious(0) possibly_damaging(0.889) TCGA-4Z-AA80-01 19 1825905 1825905 G A REXO1 Missense_Mutation p.S650L 0.19 tolerated(0.32) benign(0.001) TCGA-4Z-AA80-01 19 20229329 20229329 C G ZNF90 Missense_Mutation p.F322L 0.12 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA80-01 19 20808007 20808007 C T ZNF626 Missense_Mutation p.E226K 0.34 tolerated(0.1) probably_damaging(0.994) TCGA-4Z-AA80-01 19 23544469 23544469 C G ZNF91 Missense_Mutation p.E438Q 0.07 tolerated(0.15) benign(0.003) TCGA-4Z-AA80-01 19 36545979 36545979 C T WDR62 Missense_Mutation p.P36S 0.46 deleterious_low_confidence(0.04) benign(0.201) TCGA-4Z-AA80-01 19 37382849 37382849 G A ZNF829 Nonsense_Mutation p.Q363* 0.35 TCGA-4Z-AA80-01 19 37853584 37853584 C T HKR1 Missense_Mutation p.S296F 0.05 tolerated(0.07) probably_damaging(0.953) TCGA-4Z-AA80-01 19 38161131 38161131 G A ZNF781 5'UTR 0.07 TCGA-4Z-AA80-01 19 40520387 40520387 C G ZNF546 Missense_Mutation p.Q404E 0.08 tolerated(0.06) benign(0.084) TCGA-4Z-AA80-01 19 43372144 43372144 G C PSG1 3'UTR 0.10 TCGA-4Z-AA80-01 19 43372209 43372209 C G PSG1 3'UTR 0.08 TCGA-4Z-AA80-01 19 43375976 43375976 C G PSG1 Missense_Mutation p.E218Q 0.15 deleterious(0) probably_damaging(0.986) TCGA-4Z-AA80-01 19 4431949 4431949 G C CHAF1A Missense_Mutation p.E650Q 0.18 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA80-01 19 44981932 44981932 G A ZNF180 Nonsense_Mutation p.Q256* 0.14 TCGA-4Z-AA80-01 19 47986462 47986462 C T KPTN Silent p.L135L 0.13 TCGA-4Z-AA80-01 19 52477607 52477607 G A ZNF350 Nonsense_Mutation p.Q3* 0.08 TCGA-4Z-AA80-01 19 53453510 53453510 C T ZNF816 Silent p.E506E 0.11 TCGA-4Z-AA80-01 19 54403697 54403697 C T PRKCG Silent p.I466I 0.18 TCGA-4Z-AA80-01 19 55350900 55350901 TC - KIR2DS4 Frame_Shift_Del p.A133Pfs*165 0.09 TCGA-4Z-AA80-01 19 55451128 55451128 G A NLRP7 Silent p.N353N 0.14 TCGA-4Z-AA80-01 19 56156487 56156487 G C ZNF581 Missense_Mutation p.E184Q 0.14 tolerated(0.27) benign(0.024) TCGA-4Z-AA80-01 19 5653166 5653166 G C SAFB Missense_Mutation p.G445A 0.40 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 19 57646602 57646602 C T ZIM3 Missense_Mutation p.C368Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA80-01 19 58232324 58232324 A C ZNF671 Missense_Mutation p.F377C 0.11 tolerated(0.09) probably_damaging(0.91) TCGA-4Z-AA80-01 19 58640135 58640135 G T ZNF329 Missense_Mutation p.L246M 0.09 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA80-01 19 58846211 58846211 G A ZSCAN22 Missense_Mutation p.E15K 0.14 tolerated(0.13) benign(0) TCGA-4Z-AA80-01 19 59012660 59012660 A G SLC27A5 Missense_Mutation p.I392T 0.10 tolerated(1) benign(0) TCGA-4Z-AA80-01 19 6496045 6496045 G A TUBB4A Silent p.I155I 0.33 TCGA-4Z-AA80-01 19 9048822 9048822 G C MUC16 Missense_Mutation p.L10937V 0.13 possibly_damaging(0.801) TCGA-4Z-AA80-01 19 9049098 9049098 T C MUC16 Missense_Mutation p.S10845G 0.29 benign(0.043) TCGA-4Z-AA80-01 19 9086840 9086840 C T MUC16 Missense_Mutation p.E1659K 0.14 unknown(0) TCGA-4Z-AA80-01 19 9964891 9964891 G A OLFM2 Missense_Mutation p.H446Y 0.32 deleterious(0) probably_damaging(0.984) TCGA-4Z-AA80-01 1 104163186 104163186 G A AMY2A Missense_Mutation p.G253D 0.20 deleterious(0) probably_damaging(0.966) TCGA-4Z-AA80-01 1 110211095 110211095 G T GSTM2 Nonsense_Mutation p.E29* 0.07 TCGA-4Z-AA80-01 1 110211103 110211103 G A GSTM2 Silent p.K31K 0.43 TCGA-4Z-AA80-01 1 114506127 114506127 A G HIPK1 Missense_Mutation p.Q741R 0.15 tolerated(0.1) benign(0.211) TCGA-4Z-AA80-01 1 117663532 117663532 C T TRIM45 Missense_Mutation p.D98N 0.25 tolerated(0.07) benign(0.009) TCGA-4Z-AA80-01 1 119929395 119929395 G A HAO2 Missense_Mutation p.V238I 0.10 tolerated(0.09) benign(0.11) TCGA-4Z-AA80-01 1 119964493 119964493 T C HSD3B2 Silent p.S123S 0.26 TCGA-4Z-AA80-01 1 1234003 1234003 C A ACAP3 Silent p.V269V 0.09 TCGA-4Z-AA80-01 1 1374636 1374636 C T VWA1 Silent p.I269I 0.50 TCGA-4Z-AA80-01 1 147096640 147096640 G T BCL9 Missense_Mutation p.M1387I 0.25 tolerated(0.17) possibly_damaging(0.885) TCGA-4Z-AA80-01 1 150280533 150280533 T C MRPS21 Silent p.Y45Y 0.42 TCGA-4Z-AA80-01 1 151134293 151134293 G A LYSMD1 Missense_Mutation p.S155F 0.13 deleterious(0.05) possibly_damaging(0.668) TCGA-4Z-AA80-01 1 151156916 151156916 G A VPS72 Missense_Mutation p.R147W 0.11 deleterious(0.03) possibly_damaging(0.759) TCGA-4Z-AA80-01 1 152487935 152487935 G T CRCT1 Missense_Mutation p.A26S 0.29 unknown(0) TCGA-4Z-AA80-01 1 155291600 155291600 C A RUSC1 Silent p.L12L 0.11 TCGA-4Z-AA80-01 1 158152093 158152093 G C CD1D Missense_Mutation p.K200N 0.16 deleterious(0) benign(0) TCGA-4Z-AA80-01 1 158725016 158725016 C T OR6K6 Silent p.I137I 0.44 TCGA-4Z-AA80-01 1 159802697 159802697 C G SLAMF8 Missense_Mutation p.F133L 0.65 tolerated(0.29) possibly_damaging(0.47) TCGA-4Z-AA80-01 1 159803049 159803049 C T SLAMF8 Intron 0.67 TCGA-4Z-AA80-01 1 161600857 161600857 G C FCGR3B Missense_Mutation p.L46V 0.09 tolerated(0.15) probably_damaging(0.999) TCGA-4Z-AA80-01 1 17292592 17292592 G C CROCC Missense_Mutation p.K1558N 0.20 possibly_damaging(0.607) TCGA-4Z-AA80-01 1 183094530 183094530 A G LAMC1 Splice_Site p.X883_splice 0.05 TCGA-4Z-AA80-01 1 183195920 183195920 C A LAMC2 Missense_Mutation p.P385H 0.13 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 1 183514427 183514427 C T SMG7 Missense_Mutation p.H738Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-4Z-AA80-01 1 186360858 186360858 G A C1orf27 Missense_Mutation p.E216K 0.45 deleterious(0) benign(0.122) TCGA-4Z-AA80-01 1 197024861 197024861 G C F13B Silent p.S446S 0.15 TCGA-4Z-AA80-01 1 200584525 200584525 C A KIF14 Missense_Mutation p.C442F 0.13 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 1 200818177 200818177 G C CAMSAP2 Missense_Mutation p.K760N 0.17 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 1 203098028 203098028 C T ADORA1 Missense_Mutation p.A20V 0.17 deleterious(0) possibly_damaging(0.536) TCGA-4Z-AA80-01 1 203140596 203140596 G T MYBPH Silent p.A236A 0.10 TCGA-4Z-AA80-01 1 207105029 207105029 G A PIGR Silent p.L709L 0.16 TCGA-4Z-AA80-01 1 20827154 20827154 C A MUL1 3'UTR 0.13 TCGA-4Z-AA80-01 1 214556763 214556763 T A PTPN14 Missense_Mutation p.D812V 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-4Z-AA80-01 1 218478402 218478402 C T RRP15 Silent p.C146C 0.09 TCGA-4Z-AA80-01 1 220311311 220311311 G A IARS2 Missense_Mutation p.A701T 0.54 deleterious(0) probably_damaging(0.973) TCGA-4Z-AA80-01 1 223178774 223178774 C A DISP1 Silent p.A1345A 0.58 TCGA-4Z-AA80-01 1 227171508 227171508 C T ADCK3 Silent p.A403A 0.13 TCGA-4Z-AA80-01 1 228400181 228400181 G A OBSCN Missense_Mutation p.E233K 0.75 possibly_damaging(0.721) TCGA-4Z-AA80-01 1 228527734 228527734 G T OBSCN Nonsense_Mutation p.E6740* 0.12 TCGA-4Z-AA80-01 1 240372003 240372003 C T FMN2 Silent p.Y1297Y 0.19 TCGA-4Z-AA80-01 1 240374506 240374506 G C FMN2 Missense_Mutation p.D1346H 0.18 probably_damaging(0.996) TCGA-4Z-AA80-01 1 2985773 2985773 T C PRDM16 5'Flank 0.27 TCGA-4Z-AA80-01 1 3350374 3350374 G A PRDM16 Silent p.%3D 0.09 TCGA-4Z-AA80-01 1 37337828 37337828 G A GRIK3 Silent p.F231F 0.11 TCGA-4Z-AA80-01 1 38455251 38455251 T A SF3A3 Missense_Mutation p.N38I 0.50 tolerated(0.11) possibly_damaging(0.553) TCGA-4Z-AA80-01 1 40229432 40229432 G C BMP8B Silent p.V300V 0.14 TCGA-4Z-AA80-01 1 42870200 42870200 C G RIMKLA Nonsense_Mutation p.S138* 0.10 TCGA-4Z-AA80-01 1 51826914 51826914 C G EPS15 Missense_Mutation p.D825H 0.11 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA80-01 1 52981481 52981481 G T ZCCHC11 Intron 0.20 TCGA-4Z-AA80-01 1 53279301 53279301 G A ZYG11B Missense_Mutation p.E597K 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-4Z-AA80-01 1 55612664 55612664 G A USP24 Missense_Mutation p.R730C 0.38 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA80-01 1 62456030 62456030 C A INADL Silent p.L1287L 0.29 TCGA-4Z-AA80-01 1 82433742 82433742 C G LPHN2 Missense_Mutation p.F777L 0.12 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA80-01 1 86919106 86919106 G A CLCA2 Missense_Mutation p.R737Q 0.12 tolerated(0.74) benign(0) TCGA-4Z-AA80-01 1 881603 881603 G C NOC2L Missense_Mutation p.R623G 0.22 deleterious(0.02) possibly_damaging(0.852) TCGA-4Z-AA80-01 1 89652719 89652719 C T GBP4 Missense_Mutation p.D493N 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA80-01 20 10273879 10273879 G C SNAP25 Missense_Mutation p.L78F 0.25 deleterious(0.01) benign(0.06) TCGA-4Z-AA80-01 20 18523687 18523687 C T SEC23B Silent p.L512L 0.10 TCGA-4Z-AA80-01 20 20016946 20016946 G T CRNKL1 Missense_Mutation p.P814T 0.12 tolerated(0.21) possibly_damaging(0.644) TCGA-4Z-AA80-01 20 22563277 22563277 G A FOXA2 Silent p.F201F 0.09 TCGA-4Z-AA80-01 20 30784569 30784569 C T PLAGL2 Missense_Mutation p.E393K 0.09 tolerated(0.59) possibly_damaging(0.899) TCGA-4Z-AA80-01 20 3686499 3686499 C T SIGLEC1 Missense_Mutation p.E200K 0.10 tolerated(0.28) benign(0.049) TCGA-4Z-AA80-01 20 43047092 43047092 G A HNF4A Missense_Mutation p.E226K 0.25 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA80-01 20 44352663 44352663 G A SPINT4 Missense_Mutation p.R87H 0.49 deleterious(0) benign(0.023) TCGA-4Z-AA80-01 20 44580921 44580923 CTT - ZNF335 In_Frame_Del p.K1018del 0.15 TCGA-4Z-AA80-01 20 44587977 44587977 C T ZNF335 Missense_Mutation p.E706K 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-4Z-AA80-01 20 48568643 48568643 A G RNF114 Missense_Mutation p.N218D 0.10 tolerated(0.2) benign(0.212) TCGA-4Z-AA80-01 20 53208278 53208278 C G DOK5 Missense_Mutation p.S178C 0.10 deleterious(0.03) probably_damaging(0.937) TCGA-4Z-AA80-01 21 27945287 27945287 G T CYYR1 5'UTR 0.31 TCGA-4Z-AA80-01 21 35247702 35247702 G A ITSN1 Silent p.L1406L 0.12 TCGA-4Z-AA80-01 21 40581972 40581972 G C BRWD1 Missense_Mutation p.I1382M 0.30 tolerated(0.16) probably_damaging(0.998) TCGA-4Z-AA80-01 21 40765135 40765135 C A WRB Missense_Mutation p.P127H 0.21 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 21 43161561 43161562 - TA RIPK4 Frame_Shift_Ins p.N598* 0.17 TCGA-4Z-AA80-01 21 47542436 47542436 C T COL6A2 Silent p.R533R 0.11 TCGA-4Z-AA80-01 22 16279236 16279236 G C POTEH Missense_Mutation p.I329M 0.03 deleterious(0.01) probably_damaging(0.996) TCGA-4Z-AA80-01 22 17619207 17619207 G A CECR5 Missense_Mutation p.H326Y 0.28 deleterious(0) possibly_damaging(0.492) TCGA-4Z-AA80-01 22 17622074 17622074 C T CECR5 Silent p.L207L 0.38 TCGA-4Z-AA80-01 22 20891416 20891416 G A MED15 Missense_Mutation p.M27I 0.10 tolerated(0.35) unknown(0) TCGA-4Z-AA80-01 22 21988497 21988497 G A CCDC116 Missense_Mutation p.E87K 0.09 deleterious(0) benign(0.341) TCGA-4Z-AA80-01 22 22842048 22842048 T C ZNF280B 3'UTR 0.42 TCGA-4Z-AA80-01 22 26242214 26242214 G A MYO18B Silent p.R1172R 0.27 TCGA-4Z-AA80-01 22 31487084 31487084 C T SMTN Silent p.L359L 0.77 TCGA-4Z-AA80-01 22 38823649 38823649 G A KCNJ4 Silent p.I163I 0.10 TCGA-4Z-AA80-01 22 40054256 40054256 G C CACNA1I Missense_Mutation p.D698H 0.10 deleterious(0) probably_damaging(0.978) TCGA-4Z-AA80-01 22 41226847 41226847 C G ST13 Missense_Mutation p.Q265H 0.30 tolerated(0.13) benign(0.011) TCGA-4Z-AA80-01 22 42981928 42981928 G A POLDIP3 Missense_Mutation p.R379C 0.26 deleterious(0.01) probably_damaging(0.95) TCGA-4Z-AA80-01 22 50928346 50928346 C A MIOX 3'UTR 0.31 TCGA-4Z-AA80-01 2 100020192 100020192 C T REV1 Silent p.E1044E 0.03 TCGA-4Z-AA80-01 2 109411062 109411062 C G CCDC138 Missense_Mutation p.S154C 0.52 deleterious(0.05) possibly_damaging(0.843) TCGA-4Z-AA80-01 2 109411092 109411092 C G CCDC138 Missense_Mutation p.S164C 0.56 deleterious(0.02) possibly_damaging(0.843) TCGA-4Z-AA80-01 2 113593169 113593169 C A IL1B Nonsense_Mutation p.E25* 0.09 TCGA-4Z-AA80-01 2 11925030 11925030 C T LPIN1 Silent p.L508L 0.46 TCGA-4Z-AA80-01 2 119915321 119915321 C T C1QL2 Silent p.L175L 0.67 TCGA-4Z-AA80-01 2 125281920 125281920 C A CNTNAP5 Silent p.I455I 0.23 TCGA-4Z-AA80-01 2 133538798 133538798 C G NCKAP5 Missense_Mutation p.D1626H 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-4Z-AA80-01 2 145147111 145147111 C T ZEB2 Silent p.E1184E 0.10 TCGA-4Z-AA80-01 2 160710209 160710209 C G LY75-CD302 Splice_Site p.X866_splice 0.52 TCGA-4Z-AA80-01 2 182780354 182780354 C G SSFA2 Missense_Mutation p.L663V 0.25 deleterious(0.05) benign(0.236) TCGA-4Z-AA80-01 2 200824491 200824491 G A C2orf47 Silent p.L179L 0.28 TCGA-4Z-AA80-01 2 203847020 203847020 G C CARF Missense_Mutation p.D639H 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.808) TCGA-4Z-AA80-01 2 206590660 206590660 G T NRP2 Missense_Mutation p.G282C 0.08 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 2 206921343 206921343 C G INO80D Missense_Mutation p.Q181H 0.50 tolerated(0.59) benign(0.009) TCGA-4Z-AA80-01 2 219221592 219221592 G C C2orf62 5'UTR 0.15 TCGA-4Z-AA80-01 2 220333993 220333993 A G SPEG Missense_Mutation p.K1203E 0.67 probably_damaging(0.983) TCGA-4Z-AA80-01 2 220500049 220500049 C T SLC4A3 Silent p.I628I 0.25 TCGA-4Z-AA80-01 2 231174706 231174706 C G SP140 Nonsense_Mutation p.S709* 0.70 TCGA-4Z-AA80-01 2 231174716 231174716 C T SP140 Silent p.F712F 0.69 TCGA-4Z-AA80-01 2 231174729 231174729 C T SP140 Missense_Mutation p.H717Y 0.62 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA80-01 2 27884289 27884289 C G SUPT7L Intron 0.06 TCGA-4Z-AA80-01 2 28634861 28634863 AGA - FOSL2 In_Frame_Del p.K177del 0.16 TCGA-4Z-AA80-01 2 33012108 33012108 G A TTC27 Silent p.Q630Q 0.13 TCGA-4Z-AA80-01 2 37036074 37036074 G A VIT Missense_Mutation p.D617N 0.39 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 2 55792155 55792155 G C SMEK2 Missense_Mutation p.A653G 0.47 tolerated(0.06) benign(0.028) TCGA-4Z-AA80-01 2 68270007 68270007 T C C1D 3'UTR 0.36 TCGA-4Z-AA80-01 2 79348725 79348725 C T REG1A Silent p.I34I 0.22 TCGA-4Z-AA80-01 2 89309628 89309628 G T IGKV1-9 Missense_Mutation p.L68I 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-4Z-AA80-01 2 97217727 97217727 C G ARID5A Missense_Mutation p.L488V 0.11 tolerated(0.05) probably_damaging(0.996) TCGA-4Z-AA80-01 2 98428945 98428945 C T TMEM131 Missense_Mutation p.R601K 0.63 tolerated(0.75) benign(0.002) TCGA-4Z-AA80-01 2 98996644 98996644 G A CNGA3 Silent p.S74S 0.52 TCGA-4Z-AA80-01 2 99234778 99234778 G A UNC50 3'UTR 0.04 TCGA-4Z-AA80-01 2 99985033 99985033 C A EIF5B Missense_Mutation p.Q456K 0.05 benign(0.083) TCGA-4Z-AA80-01 3 100035000 100035000 C G TBC1D23 Missense_Mutation p.F552L 0.19 deleterious(0.01) possibly_damaging(0.81) TCGA-4Z-AA80-01 3 10183869 10183869 G A VHL Missense_Mutation p.R113Q 0.17 tolerated(0.55) benign(0.019) TCGA-4Z-AA80-01 3 112256710 112256710 C T ATG3 Missense_Mutation p.E180K 0.08 tolerated(0.29) benign(0.034) TCGA-4Z-AA80-01 3 119134792 119134792 C G ARHGAP31 Nonsense_Mutation p.S1339* 0.20 TCGA-4Z-AA80-01 3 121554181 121554181 C T EAF2 Missense_Mutation p.L17F 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-4Z-AA80-01 3 129280747 129280747 C T PLXND1 Splice_Site p.X1609_splice 0.22 TCGA-4Z-AA80-01 3 155199396 155199396 C G PLCH1 Missense_Mutation p.L1481F 0.11 tolerated_low_confidence(0.7) benign(0.288) TCGA-4Z-AA80-01 3 155655412 155655412 G C GMPS Missense_Mutation p.K671N 0.06 tolerated(0.24) benign(0.034) TCGA-4Z-AA80-01 3 169644639 169644639 G A SAMD7 Missense_Mutation p.D197N 0.15 tolerated(0.45) probably_damaging(0.917) TCGA-4Z-AA80-01 3 170724988 170724988 T A SLC2A2 Silent p.A187A 0.53 TCGA-4Z-AA80-01 3 183029510 183029510 G C MCF2L2 Missense_Mutation p.I268M 0.62 deleterious(0.05) benign(0.378) TCGA-4Z-AA80-01 3 183368417 183368417 C G KLHL24 Missense_Mutation p.F91L 0.13 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA80-01 3 193854190 193854190 G C HES1 Missense_Mutation p.E7D 0.33 tolerated_low_confidence(0.17) possibly_damaging(0.827) TCGA-4Z-AA80-01 3 194063163 194063163 G A CPN2 Missense_Mutation p.P90L 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-4Z-AA80-01 3 44852341 44852341 A G KIF15 Missense_Mutation p.I659V 0.47 deleterious(0.01) benign(0.114) TCGA-4Z-AA80-01 3 47702925 47702925 C T SMARCC1 Missense_Mutation p.E727K 0.17 deleterious(0.04) benign(0.062) TCGA-4Z-AA80-01 3 49062406 49062406 G C IMPDH2 Missense_Mutation p.I406M 0.45 tolerated(0.14) benign(0.068) TCGA-4Z-AA80-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.53 deleterious(0.04) possibly_damaging(0.846) TCGA-4Z-AA80-01 3 51746503 51746503 G C GRM2 Missense_Mutation p.L155F 0.35 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA80-01 3 54933871 54933871 G A CACNA2D3 Missense_Mutation p.E809K 0.26 tolerated(0.17) benign(0.05) TCGA-4Z-AA80-01 3 55052289 55052289 T C CACNA2D3 Missense_Mutation p.S978P 0.10 tolerated(0.08) probably_damaging(0.993) TCGA-4Z-AA80-01 3 64619212 64619212 C T ADAMTS9 Missense_Mutation p.R704K 0.33 tolerated(0.22) benign(0.005) TCGA-4Z-AA80-01 3 77666842 77666842 C T ROBO2 Missense_Mutation p.R1174W 0.37 deleterious(0) possibly_damaging(0.689) TCGA-4Z-AA80-01 3 97851973 97851973 A G OR5H1 Silent p.L144L 0.18 TCGA-4Z-AA80-01 4 104067192 104067192 C T CENPE Missense_Mutation p.V1403M 0.15 benign(0.001) TCGA-4Z-AA80-01 4 113350317 113350317 G A ALPK1 Missense_Mutation p.E270K 0.20 deleterious(0.02) possibly_damaging(0.691) TCGA-4Z-AA80-01 4 122780247 122780247 G A BBS7 Missense_Mutation p.S143F 0.17 deleterious(0.03) possibly_damaging(0.845) TCGA-4Z-AA80-01 4 126337700 126337700 G C FAT4 Missense_Mutation p.G2314A 0.19 probably_damaging(1) TCGA-4Z-AA80-01 4 147724741 147724741 A G TTC29 Missense_Mutation p.Y400H 0.36 tolerated(0.08) probably_damaging(0.96) TCGA-4Z-AA80-01 4 160235764 160235764 G A RAPGEF2 Missense_Mutation p.D72N 0.22 deleterious(0.03) possibly_damaging(0.757) TCGA-4Z-AA80-01 4 25315749 25315749 G A ZCCHC4 Missense_Mutation p.R70K 0.26 deleterious(0) possibly_damaging(0.694) TCGA-4Z-AA80-01 4 2930203 2930203 C T ADD1 Missense_Mutation p.R754C 0.61 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA80-01 4 36160435 36160435 G C ARAP2 Missense_Mutation p.S890C 0.15 tolerated(0.06) benign(0.049) TCGA-4Z-AA80-01 4 42051474 42051474 C G SLC30A9 Nonsense_Mutation p.S273* 0.17 TCGA-4Z-AA80-01 4 4307909 4307909 C G ZBTB49 Missense_Mutation p.Q434E 0.16 deleterious(0) possibly_damaging(0.475) TCGA-4Z-AA80-01 4 48170606 48170606 C T TEC Silent p.K164K 0.08 TCGA-4Z-AA80-01 4 48170614 48170614 C T TEC Missense_Mutation p.E162K 0.07 tolerated(0.25) benign(0.055) TCGA-4Z-AA80-01 4 57215790 57215790 G C AASDH Missense_Mutation p.D709E 0.33 tolerated(0.17) benign(0.004) TCGA-4Z-AA80-01 4 62897185 62897185 C G LPHN3 Missense_Mutation p.L1082V 0.13 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA80-01 4 68606195 68606195 C G GNRHR 3'UTR 0.26 TCGA-4Z-AA80-01 4 71508031 71508031 C T ENAM Silent p.N296N 0.15 TCGA-4Z-AA80-01 4 74853064 74853064 G T PPBP Silent p.I104I 0.12 TCGA-4Z-AA80-01 4 75178020 75178020 C T EPGN Silent p.C84C 0.09 TCGA-4Z-AA80-01 4 77288830 77288830 C G CCDC158 Missense_Mutation p.E483Q 0.39 deleterious(0.02) probably_damaging(0.986) TCGA-4Z-AA80-01 4 85623614 85623614 C T WDFY3 Missense_Mutation p.E2830K 0.16 deleterious(0) benign(0.364) TCGA-4Z-AA80-01 4 86952568 86952568 T C MAPK10 Missense_Mutation p.Y376C 0.25 deleterious(0.01) possibly_damaging(0.765) TCGA-4Z-AA80-01 4 945474 945474 G C TMEM175 Missense_Mutation p.C116S 0.19 tolerated(0.27) benign(0.259) TCGA-4Z-AA80-01 4 99325710 99325710 G A RAP1GDS1 Silent p.K241K 0.13 TCGA-4Z-AA80-01 5 112178759 112178759 G A APC Missense_Mutation p.D2490N 0.12 probably_damaging(1) TCGA-4Z-AA80-01 5 138209397 138209397 C T LRRTM2 Missense_Mutation p.D285N 0.17 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 5 138643724 138643724 G A MATR3 Missense_Mutation p.R207H 0.18 tolerated(0.59) benign(0.003) TCGA-4Z-AA80-01 5 140023452 140023452 G T TMCO6 Nonsense_Mutation p.E336* 0.09 TCGA-4Z-AA80-01 5 140263408 140263408 G T PCDHA13 Missense_Mutation p.A519S 0.27 deleterious_low_confidence(0) benign(0.383) TCGA-4Z-AA80-01 5 140347704 140347704 C T PCDHAC2 Silent p.S451S 0.30 TCGA-4Z-AA80-01 5 140532170 140532170 G T PCDHB6 Nonsense_Mutation p.E778* 0.10 TCGA-4Z-AA80-01 5 140755916 140755916 G A PCDHGA6 Missense_Mutation p.E756K 0.36 deleterious_low_confidence(0) possibly_damaging(0.484) TCGA-4Z-AA80-01 5 149008431 149008431 G C ARHGEF37 Missense_Mutation p.E574Q 0.35 tolerated(0.64) benign(0.004) TCGA-4Z-AA80-01 5 149755861 149755861 G - TCOF1 Frame_Shift_Del p.E704Rfs*7 0.17 TCGA-4Z-AA80-01 5 150923826 150923826 G C FAT2 Missense_Mutation p.Q2288E 0.13 benign(0.232) TCGA-4Z-AA80-01 5 150924028 150924028 G C FAT2 Missense_Mutation p.F2220L 0.20 probably_damaging(0.999) TCGA-4Z-AA80-01 5 23526824 23526824 C G PRDM9 Missense_Mutation p.Q543E 0.16 tolerated(0.07) possibly_damaging(0.768) TCGA-4Z-AA80-01 5 31302331 31302331 G T CDH6 Missense_Mutation p.D309Y 0.39 deleterious(0) possibly_damaging(0.607) TCGA-4Z-AA80-01 5 33577087 33577087 T C ADAMTS12 Missense_Mutation p.N1015S 0.39 tolerated(0.91) benign(0.021) TCGA-4Z-AA80-01 5 34811942 34811942 G C RAI14 Missense_Mutation p.D213H 0.04 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 5 37024740 37024740 T C NIPBL Silent p.C1876C 0.06 TCGA-4Z-AA80-01 5 43509453 43509453 G T C5orf34 5'UTR 0.15 TCGA-4Z-AA80-01 5 458068 458068 G A EXOC3 Nonsense_Mutation p.W406* 0.07 TCGA-4Z-AA80-01 5 475206 475206 G A SLC9A3 Missense_Mutation p.R765C 0.20 tolerated(0.05) benign(0.247) TCGA-4Z-AA80-01 5 55407266 55407266 G C ANKRD55 Missense_Mutation p.L437V 0.16 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-4Z-AA80-01 5 56176987 56176987 G C MAP3K1 Missense_Mutation p.E753Q 0.25 tolerated(0.32) benign(0.135) TCGA-4Z-AA80-01 5 68689209 68689209 G C RAD17 Missense_Mutation p.G446A 0.18 tolerated(0.08) benign(0.077) TCGA-4Z-AA80-01 5 78076469 78076469 G T ARSB Missense_Mutation p.F451L 0.53 tolerated(0.21) benign(0.052) TCGA-4Z-AA80-01 5 78324319 78324319 G C DMGDH Missense_Mutation p.L657V 0.32 deleterious(0.01) possibly_damaging(0.733) TCGA-4Z-AA80-01 5 78378752 78378752 G A BHMT2 Missense_Mutation p.E191K 0.20 deleterious(0) benign(0.023) TCGA-4Z-AA80-01 5 7883293 7883293 C T MTRR Missense_Mutation p.S296L 0.08 deleterious(0.04) benign(0.134) TCGA-4Z-AA80-01 5 79031690 79031690 A G CMYA5 Missense_Mutation p.S2368G 0.24 possibly_damaging(0.899) TCGA-4Z-AA80-01 5 79033511 79033511 G C CMYA5 Missense_Mutation p.D2975H 0.31 probably_damaging(0.957) TCGA-4Z-AA80-01 5 90074819 90074819 G A GPR98 Missense_Mutation p.M4329I 0.12 benign(0.001) TCGA-4Z-AA80-01 6 10702655 10702655 G A PAK1IP1 Missense_Mutation p.E101K 0.43 deleterious(0.03) possibly_damaging(0.718) TCGA-4Z-AA80-01 6 108533400 108533400 C T SNX3 Missense_Mutation p.E148K 0.19 tolerated(0.13) benign(0.042) TCGA-4Z-AA80-01 6 1313436 1313436 C T FOXQ1 Missense_Mutation p.S166F 0.22 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA80-01 6 139101061 139101061 G A CCDC28A Silent p.E177E 0.09 TCGA-4Z-AA80-01 6 139135700 139135700 T C ECT2L Silent p.L47L 0.44 TCGA-4Z-AA80-01 6 146875732 146875732 G A RAB32 Silent p.Q223Q 0.24 TCGA-4Z-AA80-01 6 157528724 157528724 C T ARID1B Missense_Mutation p.A2150V 0.54 probably_damaging(0.994) TCGA-4Z-AA80-01 6 26199227 26199227 C T HIST1H2AD Missense_Mutation p.R82Q 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-4Z-AA80-01 6 26273276 26273276 A C HIST1H2BI Missense_Mutation p.K25Q 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-4Z-AA80-01 6 27805804 27805804 T G HIST1H2AK Missense_Mutation p.Q105P 0.19 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-4Z-AA80-01 6 27833190 27833200 TCTCGTGCCGG - HIST1H2AL Frame_Shift_Del p.R21Pfs*18 0.13 TCGA-4Z-AA80-01 6 27834714 27834714 C T HIST1H1B Silent p.P198P 0.27 TCGA-4Z-AA80-01 6 29395176 29395176 T C OR11A1 Silent p.P81P 0.33 TCGA-4Z-AA80-01 6 30569745 30569745 C T PPP1R10 Missense_Mutation p.R894Q 0.26 tolerated_low_confidence(0.07) unknown(0) TCGA-4Z-AA80-01 6 3155942 3155942 A G TUBB2A Missense_Mutation p.L65P 0.22 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-4Z-AA80-01 6 34855709 34855709 G C TAF11 Missense_Mutation p.S9C 0.12 tolerated(0.07) benign(0.155) TCGA-4Z-AA80-01 6 42637841 42637841 C T UBR2 Missense_Mutation p.S1298F 0.11 deleterious(0) probably_damaging(0.957) TCGA-4Z-AA80-01 6 42638415 42638415 G A UBR2 Missense_Mutation p.E1350K 0.10 deleterious(0.01) benign(0.248) TCGA-4Z-AA80-01 6 42981002 42981002 C T MEA1 Missense_Mutation p.E52K 0.06 deleterious(0.03) possibly_damaging(0.828) TCGA-4Z-AA80-01 6 46825935 46825935 A G GPR116 Silent p.G1235G 0.11 TCGA-4Z-AA80-01 6 53363712 53363712 C G GCLC Missense_Mutation p.D586H 0.14 tolerated(0.08) benign(0.049) TCGA-4Z-AA80-01 6 53364903 53364903 C A GCLC Missense_Mutation p.D548Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA80-01 6 76713635 76713635 C A IMPG1 Missense_Mutation p.D390Y 0.19 deleterious(0.01) possibly_damaging(0.906) TCGA-4Z-AA80-01 6 87971286 87971286 G A ZNF292 Missense_Mutation p.E2647K 0.22 tolerated(0.11) possibly_damaging(0.579) TCGA-4Z-AA80-01 7 100483913 100483913 C T SRRT Missense_Mutation p.R502W 0.09 deleterious(0) possibly_damaging(0.756) TCGA-4Z-AA80-01 7 102768981 102768981 G C NAPEPLD Silent p.L81L 0.11 TCGA-4Z-AA80-01 7 107703265 107703265 G A LAMB4 Missense_Mutation p.S1079L 0.46 tolerated(0.48) benign(0.001) TCGA-4Z-AA80-01 7 129832606 129832606 C A TMEM209 Nonsense_Mutation p.E211* 0.38 TCGA-4Z-AA80-01 7 129832614 129832614 C G TMEM209 Missense_Mutation p.G208A 0.38 tolerated(0.18) benign(0.262) TCGA-4Z-AA80-01 7 129841852 129841852 C G TMEM209 Missense_Mutation p.Q137H 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-4Z-AA80-01 7 130039907 130039907 C T CEP41 Missense_Mutation p.E316K 0.23 tolerated(0.12) benign(0.035) TCGA-4Z-AA80-01 7 138738728 138738728 G A ZC3HAV1 Silent p.L767L 0.12 TCGA-4Z-AA80-01 7 140481456 140481456 T C BRAF Missense_Mutation p.E451G 0.07 deleterious(0.01) possibly_damaging(0.814) TCGA-4Z-AA80-01 7 147815338 147815338 G C CNTNAP2 Missense_Mutation p.E838Q 0.30 deleterious(0) probably_damaging(0.984) TCGA-4Z-AA80-01 7 150767292 150767292 C G SLC4A2 Missense_Mutation p.F436L 0.09 tolerated(0.69) benign(0.365) TCGA-4Z-AA80-01 7 151073738 151073738 G C NUB1 Missense_Mutation p.D528H 0.39 deleterious(0.01) probably_damaging(0.961) TCGA-4Z-AA80-01 7 151868427 151868427 C A KMT2C Missense_Mutation p.R3125S 0.12 probably_damaging(0.998) TCGA-4Z-AA80-01 7 151868429 151868429 T G KMT2C Splice_Site p.X3125_splice 0.12 TCGA-4Z-AA80-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.12 tolerated(0.1) benign(0.189) TCGA-4Z-AA80-01 7 33397524 33397524 C T BBS9 Missense_Mutation p.P537L 0.19 tolerated(0.1) probably_damaging(0.962) TCGA-4Z-AA80-01 7 44620629 44620629 G C TMED4 Intron 0.10 TCGA-4Z-AA80-01 7 47408074 47408074 G A TNS3 Silent p.L723L 0.08 TCGA-4Z-AA80-01 7 5642953 5642953 C T FSCN1 Missense_Mutation p.R300C 0.40 tolerated(0.05) possibly_damaging(0.717) TCGA-4Z-AA80-01 7 6230157 6230157 C G CYTH3 Missense_Mutation p.E14Q 0.47 tolerated(0.56) unknown(0) TCGA-4Z-AA80-01 7 6502692 6502692 C G KDELR2 3'UTR 0.10 TCGA-4Z-AA80-01 7 72892235 72892235 C T BAZ1B Missense_Mutation p.R519Q 0.11 tolerated(0.57) benign(0.029) TCGA-4Z-AA80-01 7 82580024 82580024 C G PCLO Missense_Mutation p.E3294Q 0.21 unknown(0) TCGA-4Z-AA80-01 7 97823129 97823129 G C LMTK2 Missense_Mutation p.E1118Q 0.10 deleterious(0) probably_damaging(0.91) TCGA-4Z-AA80-01 7 99091253 99091253 C G ZNF394 Missense_Mutation p.E529Q 0.19 tolerated(0.15) benign(0.008) TCGA-4Z-AA80-01 7 99917593 99917593 G A SPDYE3 Missense_Mutation p.D544N 0.38 deleterious(0.04) possibly_damaging(0.626) TCGA-4Z-AA80-01 7 99917655 99917655 G C SPDYE3 3'UTR 0.39 TCGA-4Z-AA80-01 8 101608973 101608973 G T SNX31 Missense_Mutation p.S291Y 0.26 tolerated(0.62) benign(0.022) TCGA-4Z-AA80-01 8 104337556 104337556 G C FZD6 Missense_Mutation p.E408Q 0.36 tolerated(0.09) benign(0.361) TCGA-4Z-AA80-01 8 107773481 107773481 C T ABRA Missense_Mutation p.M310I 0.41 tolerated(1) benign(0) TCGA-4Z-AA80-01 8 110457504 110457504 G A PKHD1L1 Silent p.V1802V 0.40 TCGA-4Z-AA80-01 8 116426306 116426306 C T TRPS1 Missense_Mutation p.R1277K 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-4Z-AA80-01 8 121426299 121426299 C T MRPL13 Missense_Mutation p.R149Q 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-4Z-AA80-01 8 125464045 125464045 G C TRMT12 Missense_Mutation p.D293H 0.52 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 8 143822579 143822579 G C SLURP1 Silent p.L98L 0.12 TCGA-4Z-AA80-01 8 145140496 145140496 C A GPAA1 Missense_Mutation p.P491Q 0.10 tolerated(0.06) benign(0.225) TCGA-4Z-AA80-01 8 17132453 17132453 G C VPS37A Missense_Mutation p.D210H 0.51 deleterious(0.01) possibly_damaging(0.779) TCGA-4Z-AA80-01 8 27925036 27925036 C T NUGGC Missense_Mutation p.E236K 0.45 tolerated(0.29) possibly_damaging(0.533) TCGA-4Z-AA80-01 8 42939930 42939930 C T FNTA Missense_Mutation p.S308F 0.09 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA80-01 8 43159892 43159892 C G RNU6-104P 3'Flank 0.16 TCGA-4Z-AA80-01 8 48955643 48955643 C T UBE2V2 Nonsense_Mutation p.Q23* 0.40 TCGA-4Z-AA80-01 8 53568752 53568752 C T RB1CC1 Missense_Mutation p.E1213K 0.26 tolerated(0.13) benign(0.005) TCGA-4Z-AA80-01 8 63938787 63938787 C G GGH Silent p.L143L 0.25 TCGA-4Z-AA80-01 8 65527623 65527623 G A CYP7B1 Silent p.I339I 0.26 TCGA-4Z-AA80-01 8 67369109 67369109 C A ADHFE1 Nonsense_Mutation p.Y348* 0.37 TCGA-4Z-AA80-01 8 71041034 71041034 C T NCOA2 Missense_Mutation p.R1169H 0.07 tolerated(0.08) probably_damaging(0.999) TCGA-4Z-AA80-01 8 8560286 8560286 C T CLDN23 Silent p.L126L 0.16 TCGA-4Z-AA80-01 8 90937729 90937729 T C OSGIN2 Missense_Mutation p.V540A 0.20 tolerated_low_confidence(0.23) benign(0.003) TCGA-4Z-AA80-01 8 95802120 95802120 G A DPY19L4 Silent p.V718V 0.33 TCGA-4Z-AA80-01 9 100126408 100126408 C T CCDC180 Silent p.A1370A 0.72 TCGA-4Z-AA80-01 9 110086241 110086241 T C RAD23B Silent p.P296P 0.04 TCGA-4Z-AA80-01 9 114520466 114520466 G A C9orf84 Silent p.F138F 0.14 TCGA-4Z-AA80-01 9 117849211 117849211 A G TNC Silent p.L267L 0.16 TCGA-4Z-AA80-01 9 135781382 135781382 C T TSC1 Missense_Mutation p.G528D 0.58 deleterious(0.04) possibly_damaging(0.606) TCGA-4Z-AA80-01 9 135781386 135781386 G A TSC1 Nonsense_Mutation p.Q527* 0.59 TCGA-4Z-AA80-01 9 135781405 135781405 G A TSC1 Silent p.H520H 0.62 TCGA-4Z-AA80-01 9 137321078 137321078 C G RXRA Missense_Mutation p.I345M 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-4Z-AA80-01 9 140472024 140472024 C A DPH7 Missense_Mutation p.R62L 0.55 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA80-01 9 140472031 140472031 G A DPH7 Nonsense_Mutation p.Q60* 0.55 TCGA-4Z-AA80-01 9 141070110 141070110 C G TUBBP5 RNA 0.51 TCGA-4Z-AA80-01 9 15474136 15474140 CTTAT - PSIP1 Frame_Shift_Del p.D242Afs*7 0.48 TCGA-4Z-AA80-01 9 15848928 15848928 G A CCDC171 Missense_Mutation p.E1151K 0.10 deleterious(0) possibly_damaging(0.762) TCGA-4Z-AA80-01 9 19435039 19435039 C T ACER2 Silent p.L154L 0.39 TCGA-4Z-AA80-01 9 28863668 28863668 A T MIR876 RNA 0.13 TCGA-4Z-AA80-01 9 34257709 34257709 G T KIF24 Silent p.G632G 0.22 TCGA-4Z-AA80-01 9 37537511 37537511 C G FBXO10 Missense_Mutation p.E339Q 0.22 tolerated(0.43) benign(0.36) TCGA-4Z-AA80-01 9 43816774 43816774 C G CNTNAP3B Missense_Mutation p.H294D 0.13 deleterious(0) probably_damaging(0.96) TCGA-4Z-AA80-01 9 74828848 74828848 G C GDA Missense_Mutation p.L173F 0.14 tolerated(0.24) benign(0.035) TCGA-4Z-AA80-01 9 77286712 77286712 C A RORB Silent p.A373A 0.58 TCGA-4Z-AA80-01 X 100912251 100912251 C G ARMCX2 Missense_Mutation p.Q108H 0.15 tolerated_low_confidence(0.09) benign(0.006) TCGA-4Z-AA80-01 X 102004502 102004502 G A BHLHB9 Silent p.V193V 0.24 TCGA-4Z-AA80-01 X 105855596 105855596 G T CXorf57 Missense_Mutation p.D96Y 0.22 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 X 120008771 120008771 C G CT47B1 Missense_Mutation p.E252Q 0.30 tolerated(0.7) unknown(0) TCGA-4Z-AA80-01 X 129042668 129042668 G A UTP14A Missense_Mutation p.E66K 0.24 deleterious(0) probably_damaging(1) TCGA-4Z-AA80-01 X 13336909 13336909 G A ATXN3L 3'UTR 0.14 TCGA-4Z-AA80-01 X 134427833 134427833 C T ZNF75D Silent p.L78L 0.36 TCGA-4Z-AA80-01 X 153549220 153549220 C T TKTL1 Silent p.S382S 0.48 TCGA-4Z-AA80-01 X 34961455 34961455 G A FAM47B Silent p.R169R 0.73 TCGA-4Z-AA80-01 X 53268444 53268444 C G IQSEC2 Missense_Mutation p.L1016F 0.44 tolerated(0.22) possibly_damaging(0.759) TCGA-4Z-AA80-01 X 73962300 73962300 C T KIAA2022 Missense_Mutation p.D698N 0.19 tolerated(0.48) benign(0.179) TCGA-4Z-AA80-01 X 77913854 77913854 G C ZCCHC5 Missense_Mutation p.Q22E 0.22 deleterious_low_confidence(0) benign(0.375) TCGA-4Z-AA81-01 10 106160580 106160580 G C CCDC147 Missense_Mutation p.R653T 0.20 deleterious(0) probably_damaging(0.949) TCGA-4Z-AA81-01 10 108380188 108380188 C A SORCS1 Nonsense_Mutation p.E932* 0.16 TCGA-4Z-AA81-01 10 108380189 108380189 C T SORCS1 Silent p.T931T 0.15 TCGA-4Z-AA81-01 10 118101652 118101652 G T CCDC172 Missense_Mutation p.M129I 0.35 tolerated(1) benign(0.002) TCGA-4Z-AA81-01 10 124915210 124915210 C T BUB3 Nonsense_Mutation p.Q78* 0.18 TCGA-4Z-AA81-01 10 16979618 16979618 C T CUBN Missense_Mutation p.D1967N 0.16 tolerated(0.46) benign(0.002) TCGA-4Z-AA81-01 10 21962318 21962318 C G MLLT10 Missense_Mutation p.S364C 0.15 tolerated(0.05) possibly_damaging(0.867) TCGA-4Z-AA81-01 10 45499590 45499590 G C ZNF22 3'UTR 0.41 TCGA-4Z-AA81-01 10 50531764 50531764 G A C10orf71 Missense_Mutation p.E392K 0.22 deleterious(0.04) possibly_damaging(0.653) TCGA-4Z-AA81-01 10 76978944 76978944 C T VDAC2 Silent p.L107L 0.17 TCGA-4Z-AA81-01 10 79579173 79579173 G A DLG5 Missense_Mutation p.R1193W 0.09 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA81-01 11 124294493 124294493 G A OR8B4 Missense_Mutation p.S92F 0.29 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-4Z-AA81-01 11 16811345 16811345 C T PLEKHA7 Missense_Mutation p.E1045K 0.12 tolerated(0.75) benign(0.018) TCGA-4Z-AA81-01 11 33361058 33361058 C G HIPK3 Missense_Mutation p.L531V 0.19 tolerated(0.22) probably_damaging(0.97) TCGA-4Z-AA81-01 11 48510784 48510784 G - OR4A47 Frame_Shift_Del p.V148Lfs*36 0.20 TCGA-4Z-AA81-01 11 55927752 55927752 C T OR8K5 Silent p.L14L 0.12 TCGA-4Z-AA81-01 11 62343415 62343415 G A TUT1 Silent p.L630L 0.09 TCGA-4Z-AA81-01 11 64882295 64882295 C T TM7SF2 Silent p.L238L 0.21 TCGA-4Z-AA81-01 11 6942864 6942864 C T OR2D3 Missense_Mutation p.T211I 0.13 tolerated(0.12) benign(0.034) TCGA-4Z-AA81-01 11 71726341 71726341 G A NUMA1 Silent p.I736I 0.48 TCGA-4Z-AA81-01 11 72946433 72946433 C T P2RY2 3'UTR 0.29 TCGA-4Z-AA81-01 12 101732699 101732699 G C UTP20 Missense_Mutation p.R1326T 0.16 deleterious(0) benign(0.389) TCGA-4Z-AA81-01 12 102122765 102122765 C T SYCP3 Intron 0.18 TCGA-4Z-AA81-01 12 112600324 112600324 G A HECTD4 Missense_Mutation p.S4229F 0.42 possibly_damaging(0.66) TCGA-4Z-AA81-01 12 118610460 118610460 C T TAOK3 Missense_Mutation p.M567I 0.25 deleterious(0.03) benign(0.01) TCGA-4Z-AA81-01 12 120613012 120613012 G A GCN1L1 Missense_Mutation p.S349L 0.27 benign(0.081) TCGA-4Z-AA81-01 12 123694686 123694686 C T MPHOSPH9 Missense_Mutation p.E219K 0.17 deleterious(0.03) benign(0.017) TCGA-4Z-AA81-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.76 deleterious(0.04) possibly_damaging(0.506) TCGA-4Z-AA81-01 12 2595325 2595325 C A CACNA1C Silent p.I271I 0.21 TCGA-4Z-AA81-01 12 27849660 27849660 G C REP15 Silent p.L55L 0.11 TCGA-4Z-AA81-01 12 27933738 27933738 G A KLHL42 Missense_Mutation p.E159K 0.13 tolerated(0.78) benign(0.095) TCGA-4Z-AA81-01 12 2921951 2921951 C T ITFG2 Missense_Mutation p.R9C 0.17 deleterious(0.01) benign(0.176) TCGA-4Z-AA81-01 12 4768275 4768275 G A NDUFA9 Missense_Mutation p.E162K 0.08 tolerated(0.12) benign(0.113) TCGA-4Z-AA81-01 12 48359752 48359752 A T TMEM106C Missense_Mutation p.Q128L 0.19 tolerated(0.16) benign(0.243) TCGA-4Z-AA81-01 12 48369112 48369112 C T COL2A1 Missense_Mutation p.E1292K 0.24 unknown(0) TCGA-4Z-AA81-01 12 49424702 49424702 C T KMT2D Missense_Mutation p.E4549K 0.18 unknown(0) TCGA-4Z-AA81-01 12 5154946 5154946 G A KCNA5 Missense_Mutation p.G545R 0.47 tolerated(0.12) benign(0.417) TCGA-4Z-AA81-01 12 53074175 53074175 G C KRT1 5'UTR 0.26 TCGA-4Z-AA81-01 12 56482537 56482537 G A ERBB3 Missense_Mutation p.E332K 0.17 tolerated(0.15) possibly_damaging(0.67) TCGA-4Z-AA81-01 12 56712106 56712106 G A PAN2 Silent p.F1163F 0.21 TCGA-4Z-AA81-01 12 56865554 56865554 C T GLS2 Intron 0.15 TCGA-4Z-AA81-01 12 57348829 57348829 T A RDH16 Missense_Mutation p.T145S 0.48 deleterious(0.02) probably_damaging(0.986) TCGA-4Z-AA81-01 12 57532322 57532322 G A LRP1 Missense_Mutation p.E50K 0.44 probably_damaging(0.977) TCGA-4Z-AA81-01 12 92539264 92539264 G A BTG1 Silent p.A16A 0.14 TCGA-4Z-AA81-01 12 95867938 95867938 C T METAP2 5'UTR 0.19 TCGA-4Z-AA81-01 13 31231955 31231955 G A USPL1 Missense_Mutation p.D581N 0.12 tolerated(0.07) benign(0.045) TCGA-4Z-AA81-01 13 32953526 32953526 C G BRCA2 Missense_Mutation p.Q2943E 0.26 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA81-01 13 36909384 36909384 G T SPG20 Nonsense_Mutation p.S195* 0.36 TCGA-4Z-AA81-01 13 48881511 48881511 G - RB1 Frame_Shift_Del p.E79Rfs*32 0.18 TCGA-4Z-AA81-01 13 49050906 49050906 G T RB1 Nonsense_Mutation p.E864* 0.28 TCGA-4Z-AA81-01 13 97928586 97928586 G C MBNL2 Missense_Mutation p.E33Q 0.10 deleterious(0) probably_damaging(0.981) TCGA-4Z-AA81-01 14 22616519 22616519 G C TRAV27 Missense_Mutation p.R87T 0.29 deleterious(0.03) possibly_damaging(0.9) TCGA-4Z-AA81-01 14 55310582 55310582 G C GCH1 3'UTR 0.32 TCGA-4Z-AA81-01 14 55310786 55310786 G A GCH1 Silent p.F234F 0.20 TCGA-4Z-AA81-01 14 58831708 58831708 G C ARID4A Missense_Mutation p.L967F 0.25 tolerated(0.16) benign(0.029) TCGA-4Z-AA81-01 14 64497845 64497845 G A SYNE2 Missense_Mutation p.D2331N 0.27 possibly_damaging(0.732) TCGA-4Z-AA81-01 14 67291200 67291200 G A GPHN Silent p.L70L 0.34 TCGA-4Z-AA81-01 14 73406954 73406954 G A DCAF4 Missense_Mutation p.E74K 0.23 deleterious(0.01) benign(0.167) TCGA-4Z-AA81-01 14 77872263 77872263 G A NOXRED1 Nonsense_Mutation p.Q300* 0.42 TCGA-4Z-AA81-01 15 100996217 100996217 G A CERS3 Missense_Mutation p.H294Y 0.31 tolerated(1) benign(0.001) TCGA-4Z-AA81-01 15 31358301 31358301 G A TRPM1 Silent p.I273I 0.15 TCGA-4Z-AA81-01 15 31358323 31358323 C T TRPM1 Missense_Mutation p.R266Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA81-01 15 32917777 32917777 G T ARHGAP11A Nonsense_Mutation p.E269* 0.21 TCGA-4Z-AA81-01 15 41106207 41106207 G A ZFYVE19 Missense_Mutation p.E426K 0.19 deleterious(0.01) possibly_damaging(0.533) TCGA-4Z-AA81-01 15 42512273 42512273 C A TMEM87A Silent p.L488L 0.14 TCGA-4Z-AA81-01 15 58000985 58000985 G T POLR2M Missense_Mutation p.A63S 0.35 tolerated(0.15) benign(0.133) TCGA-4Z-AA81-01 15 64698620 64698620 C G TRIP4 Missense_Mutation p.I263M 0.17 tolerated(0.09) benign(0.418) TCGA-4Z-AA81-01 15 69339794 69339794 C A NOX5 Silent p.I578I 0.15 TCGA-4Z-AA81-01 15 75685021 75685021 G C SIN3A Missense_Mutation p.Q805E 0.17 deleterious(0.01) benign(0.084) TCGA-4Z-AA81-01 15 75685103 75685103 G C SIN3A Silent p.L777L 0.14 TCGA-4Z-AA81-01 15 75977188 75977188 C T CSPG4 Silent p.L1446L 0.26 TCGA-4Z-AA81-01 15 78566538 78566538 G A DNAJA4 Splice_Site p.X169_splice 0.22 TCGA-4Z-AA81-01 15 79603591 79603591 C T TMED3 5'UTR 0.16 TCGA-4Z-AA81-01 15 83331895 83331895 G C AP3B2 Missense_Mutation p.S844C 0.33 deleterious(0.01) possibly_damaging(0.7) TCGA-4Z-AA81-01 15 90172608 90172608 C T KIF7 Missense_Mutation p.R1172Q 0.27 tolerated(0.14) benign(0.091) TCGA-4Z-AA81-01 16 2329098 2329098 C G ABCA3 Missense_Mutation p.D1465H 0.35 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA81-01 16 27455936 27455936 C T IL21R Missense_Mutation p.S194L 0.25 deleterious(0) possibly_damaging(0.468) TCGA-4Z-AA81-01 16 30365948 30365948 C A CD2BP2 Nonsense_Mutation p.E19* 0.15 TCGA-4Z-AA81-01 16 31228334 31228334 C G PYDC1 Missense_Mutation p.E6Q 0.62 tolerated(0.06) benign(0.244) TCGA-4Z-AA81-01 16 3786650 3786650 C T CREBBP Splice_Site p.X1520_splice 0.23 TCGA-4Z-AA81-01 16 48290565 48290565 G A LONP2 Silent p.L171L 0.47 TCGA-4Z-AA81-01 16 70546313 70546313 C G COG4 Silent p.L189L 0.26 TCGA-4Z-AA81-01 16 84093022 84093022 G T MBTPS1 Missense_Mutation p.H906N 0.14 tolerated(0.12) benign(0.009) TCGA-4Z-AA81-01 17 1494615 1494616 - GT SLC43A2 Frame_Shift_Ins p.L294Rfs*11 0.17 TCGA-4Z-AA81-01 17 15943760 15943760 G A NCOR1 Missense_Mutation p.T2243M 0.38 possibly_damaging(0.495) TCGA-4Z-AA81-01 17 20907528 20907528 G A USP22 Silent p.L508L 0.29 TCGA-4Z-AA81-01 17 2224606 2224606 G C SRR Missense_Mutation p.E136Q 0.45 deleterious(0.03) benign(0.042) TCGA-4Z-AA81-01 17 2224633 2224633 G C SRR Missense_Mutation p.E145Q 0.41 tolerated(0.1) benign(0.033) TCGA-4Z-AA81-01 17 29647475 29647475 G C EVI2A 5'UTR 0.29 TCGA-4Z-AA81-01 17 33343554 33343554 G C RFFL Missense_Mutation p.L241V 0.13 deleterious(0) probably_damaging(0.975) TCGA-4Z-AA81-01 17 37188320 37188320 C G CTD-2206N4.2 5'Flank 0.17 TCGA-4Z-AA81-01 17 38948682 38948682 G C KRT28 Missense_Mutation p.F464L 0.12 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-4Z-AA81-01 17 43004371 43004371 C T KIF18B Silent p.K784K 0.14 TCGA-4Z-AA81-01 17 4858863 4858863 G T ENO3 Nonsense_Mutation p.G277* 0.13 TCGA-4Z-AA81-01 17 6330312 6330312 C T AIPL1 Silent p.A177A 0.17 TCGA-4Z-AA81-01 17 65083148 65083148 G T HELZ Missense_Mutation p.S1764Y 0.18 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA81-01 17 685883 685883 G T RNMTL1 Nonsense_Mutation p.E89* 0.18 TCGA-4Z-AA81-01 17 7187949 7187949 G A SLC2A4 Silent p.A291A 0.31 TCGA-4Z-AA81-01 17 74005808 74005808 C T EVPL Missense_Mutation p.E1160K 0.11 deleterious(0.03) benign(0.178) TCGA-4Z-AA81-01 17 7612764 7612764 G A EFNB3 Missense_Mutation p.R298Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA81-01 17 79848567 79848567 G A ALYREF Nonsense_Mutation p.Q130* 0.23 TCGA-4Z-AA81-01 17 79860607 79860607 G A NPB Missense_Mutation p.D121N 0.27 deleterious(0.01) possibly_damaging(0.879) TCGA-4Z-AA81-01 18 21481258 21481258 G C LAMA3 Missense_Mutation p.E2058Q 0.21 possibly_damaging(0.756) TCGA-4Z-AA81-01 18 22008844 22008844 G C IMPACT Silent p.P59P 0.12 TCGA-4Z-AA81-01 18 2595561 2595561 G A NDC80 Missense_Mutation p.E388K 0.21 tolerated(0.13) benign(0.051) TCGA-4Z-AA81-01 19 17476925 17476925 A G PLVAP Missense_Mutation p.M150T 0.39 tolerated(0.7) benign(0) TCGA-4Z-AA81-01 19 33700335 33700335 G T SLC7A10 Missense_Mutation p.F440L 0.11 tolerated(0.09) possibly_damaging(0.728) TCGA-4Z-AA81-01 19 35616173 35616173 C T LGI4 Missense_Mutation p.R513K 0.25 tolerated(0.18) benign(0.007) TCGA-4Z-AA81-01 19 41812428 41812428 G A HNRNPUL1 Silent p.G843G 0.15 TCGA-4Z-AA81-01 19 4529290 4529290 C T PLIN5 Intron 0.19 TCGA-4Z-AA81-01 19 4529829 4529829 C T PLIN5 Silent p.E102E 0.20 TCGA-4Z-AA81-01 19 45716518 45716518 C T EXOC3L2 Missense_Mutation p.E347K 0.14 deleterious(0.04) benign(0.159) TCGA-4Z-AA81-01 19 47920177 47920177 C T MEIS3 Missense_Mutation p.E77K 0.22 deleterious(0) possibly_damaging(0.877) TCGA-4Z-AA81-01 19 48789377 48789377 G A ZNF114 Missense_Mutation p.D166N 0.07 tolerated(0.56) possibly_damaging(0.555) TCGA-4Z-AA81-01 19 49000753 49000753 G A LMTK3 Silent p.L1220L 0.12 TCGA-4Z-AA81-01 19 49090614 49090614 G T SULT2B1 Missense_Mutation p.D115Y 0.15 deleterious(0) possibly_damaging(0.694) TCGA-4Z-AA81-01 19 50375093 50375093 C T AKT1S1 Missense_Mutation p.E165K 0.40 deleterious(0.02) benign(0.075) TCGA-4Z-AA81-01 19 52825831 52825831 C T ZNF480 Missense_Mutation p.S443L 0.14 deleterious(0.04) benign(0.174) TCGA-4Z-AA81-01 19 54646887 54646887 G A CNOT3 Missense_Mutation p.E20K 0.08 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA81-01 19 55889593 55889593 C G TMEM190 3'UTR 0.13 TCGA-4Z-AA81-01 19 58238813 58238813 G A ZNF671 Silent p.L28L 0.23 TCGA-4Z-AA81-01 19 58238970 58238970 G A ZNF671 5'UTR 0.26 TCGA-4Z-AA81-01 19 58578689 58578689 C T ZNF135 Silent p.F303F 0.17 TCGA-4Z-AA81-01 1 118548094 118548094 C T SPAG17 Missense_Mutation p.M1573I 0.18 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA81-01 1 12941919 12941919 C A PRAMEF4 Nonsense_Mutation p.E211* 0.09 TCGA-4Z-AA81-01 1 150255782 150255782 G C C1orf51 Missense_Mutation p.E35D 0.18 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-4Z-AA81-01 1 151016199 151016199 C G BNIPL Missense_Mutation p.R283G 0.17 deleterious(0) benign(0.059) TCGA-4Z-AA81-01 1 151849488 151849488 G C THEM4 Nonsense_Mutation p.S224* 0.10 TCGA-4Z-AA81-01 1 153912912 153912912 G C DENND4B Silent p.L499L 0.53 TCGA-4Z-AA81-01 1 153912942 153912942 G A DENND4B Silent p.V489V 0.41 TCGA-4Z-AA81-01 1 154573836 154573836 C G ADAR Missense_Mutation p.E428Q 0.29 tolerated(0.29) benign(0.011) TCGA-4Z-AA81-01 1 155234520 155234520 C G CLK2 Missense_Mutation p.D326H 0.11 deleterious(0) probably_damaging(1) TCGA-4Z-AA81-01 1 156641550 156641550 G C NES Silent p.L810L 0.50 TCGA-4Z-AA81-01 1 158589083 158589083 G C SPTA1 Silent p.V2153V 0.45 TCGA-4Z-AA81-01 1 169930197 169930197 G C KIFAP3 Missense_Mutation p.F721L 0.14 tolerated(0.28) benign(0.16) TCGA-4Z-AA81-01 1 169952465 169952465 C T KIFAP3 Missense_Mutation p.M484I 0.13 deleterious(0.01) possibly_damaging(0.622) TCGA-4Z-AA81-01 1 203472852 203472852 G A OPTC 3'UTR 0.45 TCGA-4Z-AA81-01 1 207648249 207648249 G A CR2 Missense_Mutation p.E802K 0.13 tolerated(0.35) benign(0.169) TCGA-4Z-AA81-01 1 20992754 20992754 G C KIF17 Missense_Mutation p.S955C 0.21 deleterious(0.01) possibly_damaging(0.838) TCGA-4Z-AA81-01 1 22925343 22925343 C A EPHA8 Missense_Mutation p.Q731K 0.35 deleterious(0.02) benign(0.159) TCGA-4Z-AA81-01 1 232539249 232539249 C T SIPA1L2 Missense_Mutation p.E1629K 0.64 tolerated(0.41) benign(0.392) TCGA-4Z-AA81-01 1 237870477 237870477 C T RYR2 Missense_Mutation p.S3270L 0.14 benign(0.394) TCGA-4Z-AA81-01 1 240492419 240492419 G T FMN2 Missense_Mutation p.R1420L 0.52 benign(0.42) TCGA-4Z-AA81-01 1 242271091 242271091 C T PLD5 Missense_Mutation p.R374Q 0.41 deleterious(0) probably_damaging(0.915) TCGA-4Z-AA81-01 1 24795493 24795493 G A NIPAL3 Missense_Mutation p.D347N 0.17 tolerated(0.11) benign(0.004) TCGA-4Z-AA81-01 1 41579056 41579056 C T SCMH1 Missense_Mutation p.R205Q 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-4Z-AA81-01 1 94564537 94564537 C G ABCA4 Missense_Mutation p.G194A 0.21 tolerated(0.53) probably_damaging(0.998) TCGA-4Z-AA81-01 20 17596589 17596589 G C RRBP1 Silent p.L878L 0.12 TCGA-4Z-AA81-01 20 2594078 2594078 C T TMC2 Intron 0.17 TCGA-4Z-AA81-01 20 34526635 34526635 G C PHF20 Missense_Mutation p.D773H 0.56 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA81-01 20 35506419 35506419 G A TLDC2 Missense_Mutation p.E51K 0.47 tolerated(0.29) benign(0.357) TCGA-4Z-AA81-01 20 44048164 44048164 G A PIGT Silent p.L205L 0.60 TCGA-4Z-AA81-01 20 62664233 62664233 G A PRPF6 Missense_Mutation p.E905K 0.14 deleterious(0) probably_damaging(0.968) TCGA-4Z-AA81-01 22 20825634 20825634 C A KLHL22 Intron 0.34 TCGA-4Z-AA81-01 22 26239779 26239779 T G MYO18B Missense_Mutation p.Y1096D 0.09 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA81-01 22 32879976 32879976 C T FBXO7 Silent p.L170L 0.34 TCGA-4Z-AA81-01 22 41551100 41551100 C T EP300 Nonsense_Mutation p.Q1082* 0.24 TCGA-4Z-AA81-01 22 50885748 50885748 C G SBF1 Intron 0.20 TCGA-4Z-AA81-01 2 113089142 113089142 G C ZC3H6 Missense_Mutation p.D883H 0.20 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA81-01 2 118575276 118575276 G C DDX18 Missense_Mutation p.K114N 0.36 deleterious(0.03) benign(0.003) TCGA-4Z-AA81-01 2 132257909 132257909 C G AC093838.4 RNA 0.16 TCGA-4Z-AA81-01 2 148705722 148705722 T A ORC4 Silent p.S220S 0.38 TCGA-4Z-AA81-01 2 160189181 160189181 C T BAZ2B Missense_Mutation p.R1938Q 0.12 benign(0.274) TCGA-4Z-AA81-01 2 160261551 160261551 C G BAZ2B Missense_Mutation p.E918Q 0.11 probably_damaging(0.998) TCGA-4Z-AA81-01 2 170343604 170343604 A G BBS5 Silent p.R56R 0.03 TCGA-4Z-AA81-01 2 179418814 179418814 T C TTN Missense_Mutation p.K29675R 0.37 TCGA-4Z-AA81-01 2 201677996 201677996 G A BZW1 Missense_Mutation p.R51K 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-4Z-AA81-01 2 202260139 202260139 C T TRAK2 Missense_Mutation p.M266I 0.15 tolerated(0.71) benign(0.029) TCGA-4Z-AA81-01 2 204260417 204260417 G A ABI2 Missense_Mutation p.R249Q 0.44 tolerated(0.33) possibly_damaging(0.886) TCGA-4Z-AA81-01 2 209293000 209293000 C G PTH2R Silent p.L50L 0.25 TCGA-4Z-AA81-01 2 219896381 219896381 C T CCDC108 Splice_Site p.X216_splice 0.55 TCGA-4Z-AA81-01 2 220038920 220038920 G C CNPPD1 Missense_Mutation p.L174V 0.32 tolerated(0.11) probably_damaging(0.946) TCGA-4Z-AA81-01 2 220342823 220342823 G A SPEG Missense_Mutation p.E1675K 0.14 probably_damaging(0.978) TCGA-4Z-AA81-01 2 230272012 230272012 C T DNER Silent p.L553L 0.40 TCGA-4Z-AA81-01 2 231155263 231155263 G C SP140 Missense_Mutation p.K603N 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA81-01 2 233655858 233655858 G C GIGYF2 Missense_Mutation p.E379D 0.22 benign(0.05) TCGA-4Z-AA81-01 2 241700175 241700175 C T KIF1A Missense_Mutation p.R784Q 0.36 tolerated(0.16) possibly_damaging(0.642) TCGA-4Z-AA81-01 2 241969871 241969871 C T SNED1 Silent p.R128R 0.42 TCGA-4Z-AA81-01 2 79255456 79255456 A G REG3G 3'UTR 0.48 TCGA-4Z-AA81-01 3 111264032 111264032 G A CD96 Silent p.L67L 0.21 TCGA-4Z-AA81-01 3 123166414 123166414 C A ADCY5 Nonsense_Mutation p.E327* 0.41 TCGA-4Z-AA81-01 3 127379869 127379869 C A PODXL2 Missense_Mutation p.S333Y 0.21 deleterious(0.01) possibly_damaging(0.838) TCGA-4Z-AA81-01 3 128982806 128982806 C G COPG1 Silent p.V396V 0.14 TCGA-4Z-AA81-01 3 129247681 129247681 G A RHO Nonsense_Mutation p.W35* 0.42 TCGA-4Z-AA81-01 3 12955005 12955005 C T IQSEC1 Missense_Mutation p.E761K 0.47 deleterious(0) probably_damaging(0.96) TCGA-4Z-AA81-01 3 143691520 143691520 C T C3orf58 Missense_Mutation p.R116C 0.50 tolerated(0.06) possibly_damaging(0.459) TCGA-4Z-AA81-01 3 149048195 149048195 T C TM4SF18 Silent p.V63V 0.54 TCGA-4Z-AA81-01 3 153973268 153973268 C G ARHGEF26 3'UTR 0.22 TCGA-4Z-AA81-01 3 169485493 169485493 A G ACTRT3 Silent p.C282C 0.27 TCGA-4Z-AA81-01 3 184801255 184801255 G A C3orf70 Missense_Mutation p.S98L 0.18 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-4Z-AA81-01 3 186507037 186507037 G A EIF4A2 Missense_Mutation p.M401I 0.25 tolerated(0.08) benign(0.001) TCGA-4Z-AA81-01 3 197503839 197503839 C G FYTTD1 Missense_Mutation p.S233C 0.11 deleterious(0) probably_damaging(0.964) TCGA-4Z-AA81-01 3 48965199 48965199 G C ARIH2 Missense_Mutation p.E70Q 0.06 tolerated(0.07) benign(0.005) TCGA-4Z-AA81-01 3 50290507 50290507 G A GNAI2 Missense_Mutation p.V119M 0.42 tolerated(0.27) benign(0.004) TCGA-4Z-AA81-01 3 53346346 53346346 C T DCP1A Silent p.Q145Q 0.24 TCGA-4Z-AA81-01 3 57132165 57132165 C - IL17RD Frame_Shift_Del p.Q523Sfs*66 0.17 TCGA-4Z-AA81-01 3 64599034 64599034 C T ADAMTS9 Missense_Mutation p.G1114D 0.16 tolerated(0.07) probably_damaging(0.914) TCGA-4Z-AA81-01 4 103644043 103644043 G A MANBA Silent p.V178V 0.25 TCGA-4Z-AA81-01 4 108614975 108614975 T C PAPSS1 Silent p.A121A 0.36 TCGA-4Z-AA81-01 4 108911038 108911038 C T HADH 5'UTR 0.78 TCGA-4Z-AA81-01 4 120432220 120432220 C G PDE5A Silent p.L690L 0.16 TCGA-4Z-AA81-01 4 138449707 138449707 G T PCDH18 Silent p.R889R 0.15 TCGA-4Z-AA81-01 4 1808044 1808044 C T FGFR3 Nonsense_Mutation p.Q676* 0.22 TCGA-4Z-AA81-01 4 184240843 184240843 G C CLDN22 Missense_Mutation p.L177V 0.20 tolerated(1) benign(0.015) TCGA-4Z-AA81-01 4 41262687 41262687 G C UCHL1 Missense_Mutation p.Q66H 0.29 deleterious(0) possibly_damaging(0.678) TCGA-4Z-AA81-01 4 55151562 55151562 C T PDGFRA Missense_Mutation p.S783L 0.37 tolerated(0.45) benign(0.2) TCGA-4Z-AA81-01 4 654369 654369 G T PDE6B Silent p.L527L 0.27 TCGA-4Z-AA81-01 4 76926029 76926029 C G CXCL9 Missense_Mutation p.G70A 0.19 tolerated(0.05) probably_damaging(1) TCGA-4Z-AA81-01 5 137488175 137488175 G C BRD8 Missense_Mutation p.S951C 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.808) TCGA-4Z-AA81-01 5 147451755 147451755 G C SPINK5 Missense_Mutation p.R85T 0.04 deleterious(0.02) benign(0.105) TCGA-4Z-AA81-01 5 148745693 148745693 C T PCYOX1L Missense_Mutation p.S220L 0.26 deleterious(0) probably_damaging(0.932) TCGA-4Z-AA81-01 5 151239503 151239503 G C GLRA1 Missense_Mutation p.P107A 0.37 deleterious(0.03) possibly_damaging(0.464) TCGA-4Z-AA81-01 5 176765523 176765523 G A LMAN2 Silent p.I133I 0.67 TCGA-4Z-AA81-01 5 35646888 35646888 G T SPEF2 Missense_Mutation p.M235I 0.12 tolerated(0.06) benign(0.032) TCGA-4Z-AA81-01 6 102134192 102134192 G A GRIK2 Silent p.P305P 0.50 TCGA-4Z-AA81-01 6 2685564 2685564 C T MYLK4 Missense_Mutation p.E171K 0.18 deleterious(0) probably_damaging(0.95) TCGA-4Z-AA81-01 6 36475371 36475371 C T STK38 Silent p.V226V 0.19 TCGA-4Z-AA81-01 6 41196516 41196516 C G TREML4 Nonsense_Mutation p.S43* 0.11 TCGA-4Z-AA81-01 6 42647461 42647461 G C UBR2 Splice_Site p.X1537_splice 0.15 TCGA-4Z-AA81-01 6 42797677 42797677 G A GLTSCR1L Missense_Mutation p.G536R 0.17 tolerated(0.25) possibly_damaging(0.576) TCGA-4Z-AA81-01 6 43155715 43155715 G T CUL9 Missense_Mutation p.A616S 0.17 tolerated(0.37) benign(0.036) TCGA-4Z-AA81-01 6 43406504 43406504 G C ABCC10 Missense_Mutation p.E700Q 0.23 deleterious(0.03) probably_damaging(0.95) TCGA-4Z-AA81-01 6 46777161 46777161 G A MEP1A Silent p.L89L 0.11 TCGA-4Z-AA81-01 6 62604680 62604680 G A KHDRBS2 Missense_Mutation p.R224W 0.25 deleterious(0) probably_damaging(0.94) TCGA-4Z-AA81-01 6 71508402 71508402 G A SMAP1 Missense_Mutation p.E180K 0.25 tolerated(0.24) benign(0.04) TCGA-4Z-AA81-01 7 106888854 106888854 C G COG5 Missense_Mutation p.E645Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA81-01 7 138189076 138189076 G A TRIM24 Missense_Mutation p.E136K 0.10 deleterious(0.01) possibly_damaging(0.642) TCGA-4Z-AA81-01 7 138189078 138189078 G A TRIM24 Silent p.E136E 0.11 TCGA-4Z-AA81-01 7 138189118 138189118 G A TRIM24 Missense_Mutation p.E150K 0.15 deleterious(0.04) possibly_damaging(0.829) TCGA-4Z-AA81-01 7 142983744 142983744 G T TMEM139 Missense_Mutation p.R158I 0.19 deleterious(0) probably_damaging(0.974) TCGA-4Z-AA81-01 7 15666407 15666407 G C MEOX2 Nonsense_Mutation p.Y218* 0.30 TCGA-4Z-AA81-01 7 2406181 2406181 C G EIF3B Missense_Mutation p.F437L 0.15 tolerated(0.06) benign(0.095) TCGA-4Z-AA81-01 7 27185503 27185503 C T HOXA6 Missense_Mutation p.R159H 0.33 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA81-01 7 44005505 44005505 C T RP5-1165K10.2 RNA 0.21 TCGA-4Z-AA81-01 7 44281934 44281934 C A CAMK2B Silent p.P234P 0.28 TCGA-4Z-AA81-01 7 44294184 44294184 C G CAMK2B Missense_Mutation p.E100Q 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.813) TCGA-4Z-AA81-01 7 5780726 5780726 C T RNF216 Missense_Mutation p.D308N 0.29 tolerated(0.91) benign(0.156) TCGA-4Z-AA81-01 7 6049088 6049088 G T AIMP2 Missense_Mutation p.G32C 0.10 deleterious(0.03) benign(0.011) TCGA-4Z-AA81-01 7 72756889 72756889 G A FKBP6 Missense_Mutation p.E326K 0.37 deleterious_low_confidence(0.01) benign(0.001) TCGA-4Z-AA81-01 7 73118097 73118097 G A STX1A Silent p.I176I 0.13 TCGA-4Z-AA81-01 7 76908131 76908131 G A CCDC146 Silent p.K501K 0.11 TCGA-4Z-AA81-01 7 77649046 77649046 C T MAGI2 Silent p.A1318A 0.18 TCGA-4Z-AA81-01 7 99669283 99669283 C T ZNF3 Missense_Mutation p.R275Q 0.14 tolerated(1) benign(0.012) TCGA-4Z-AA81-01 8 108972995 108972995 T G RSPO2 Missense_Mutation p.K112Q 0.21 deleterious(0) possibly_damaging(0.853) TCGA-4Z-AA81-01 8 117862883 117862883 C - RAD21 Frame_Shift_Del p.E532Kfs*80 0.24 TCGA-4Z-AA81-01 8 18258048 18258048 C T NAT2 Missense_Mutation p.H179Y 0.11 tolerated(0.05) benign(0.002) TCGA-4Z-AA81-01 8 22145071 22145071 C G PIWIL2 Missense_Mutation p.F258L 0.53 tolerated(0.07) benign(0.013) TCGA-4Z-AA81-01 8 26221294 26221294 C G PPP2R2A Missense_Mutation p.S297C 0.35 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA81-01 8 36662799 36662799 T G KCNU1 Missense_Mutation p.L155W 0.33 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA81-01 8 48771142 48771142 C T PRKDC Missense_Mutation p.G2133R 0.43 benign(0.192) TCGA-4Z-AA81-01 8 48839828 48839828 C T PRKDC Missense_Mutation p.R782K 0.17 benign(0) TCGA-4Z-AA81-01 8 53540691 53540691 C T RB1CC1 Missense_Mutation p.E1513K 0.25 tolerated(0.07) probably_damaging(0.961) TCGA-4Z-AA81-01 8 61655588 61655588 C A CHD7 Missense_Mutation p.H533N 0.21 benign(0.107) TCGA-4Z-AA81-01 8 70964291 70964291 G C PRDM14 3'UTR 0.15 TCGA-4Z-AA81-01 8 76470818 76470818 C G HNF4G Missense_Mutation p.L257V 0.19 tolerated(0.09) possibly_damaging(0.672) TCGA-4Z-AA81-01 8 94747132 94747132 C G RBM12B Missense_Mutation p.E503Q 0.45 deleterious(0.01) benign(0.04) TCGA-4Z-AA81-01 8 99139897 99139897 G A POP1 Missense_Mutation p.E73K 0.17 tolerated(0.14) benign(0.186) TCGA-4Z-AA81-01 9 113170978 113170978 G A SVEP1 Missense_Mutation p.S2301F 0.18 benign(0.25) TCGA-4Z-AA81-01 9 114510423 114510423 C T C9orf84 Missense_Mutation p.E243K 0.18 tolerated(0.07) benign(0.147) TCGA-4Z-AA81-01 9 124103553 124103553 G C STOM Nonsense_Mutation p.S265* 0.20 TCGA-4Z-AA81-01 9 125923295 125923295 C T STRBP Silent p.L196L 0.32 TCGA-4Z-AA81-01 9 125923304 125923304 C T STRBP Silent p.Q193Q 0.30 TCGA-4Z-AA81-01 9 126144641 126144641 G A DENND1A Silent p.P700P 0.20 TCGA-4Z-AA81-01 9 132869818 132869818 G A GPR107 Missense_Mutation p.G436S 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.749) TCGA-4Z-AA81-01 9 133729477 133729477 G A ABL1 Missense_Mutation p.D55N 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-4Z-AA81-01 9 135554042 135554042 A G GTF3C4 Missense_Mutation p.N346D 0.17 tolerated(0.3) probably_damaging(0.98) TCGA-4Z-AA81-01 9 136501511 136501511 C G DBH Silent p.R6R 0.09 TCGA-4Z-AA81-01 9 138656923 138656923 G A KCNT1 Missense_Mutation p.G361D 0.10 deleterious(0.01) possibly_damaging(0.608) TCGA-4Z-AA81-01 9 139265142 139265142 G C CARD9 Silent p.L213L 0.15 TCGA-4Z-AA81-01 9 17394676 17394676 G A CNTLN Missense_Mutation p.E742K 0.16 tolerated(0.08) possibly_damaging(0.886) TCGA-4Z-AA81-01 9 21239519 21239519 G A IFNA14 Missense_Mutation p.S139F 0.19 deleterious(0.02) possibly_damaging(0.856) TCGA-4Z-AA81-01 9 340277 340277 G A DOCK8 Silent p.L545L 0.11 TCGA-4Z-AA81-01 9 39360998 39360998 G A SPATA31A1 Missense_Mutation p.R1079K 0.42 tolerated(0.55) possibly_damaging(0.671) TCGA-4Z-AA81-01 9 39890249 39890249 G A SPATA31A2 Missense_Mutation p.R1079K 0.50 tolerated(0.76) possibly_damaging(0.87) TCGA-4Z-AA81-01 9 88932164 88932164 C T ZCCHC6 Missense_Mutation p.E1082K 0.19 tolerated(0.23) benign(0.033) TCGA-4Z-AA81-01 9 93624499 93624499 G A SYK Missense_Mutation p.R197K 0.39 tolerated(0.13) benign(0.005) TCGA-4Z-AA81-01 X 111019567 111019567 C - TRPC5 Frame_Shift_Del p.E966Kfs*47 0.37 TCGA-4Z-AA81-01 X 118124521 118124521 G C LONRF3 Missense_Mutation p.M471I 0.81 deleterious(0.02) possibly_damaging(0.823) TCGA-4Z-AA81-01 X 130220621 130220621 A G ARHGAP36 Missense_Mutation p.S490G 0.68 tolerated(0.23) benign(0) TCGA-4Z-AA81-01 X 83442829 83442829 C T RPS6KA6 Missense_Mutation p.E27K 0.36 tolerated_low_confidence(0.19) benign(0.001) TCGA-4Z-AA81-01 X 96139474 96139474 C T RPA4 Silent p.L55L 0.34 TCGA-4Z-AA82-01 10 116889240 116889240 C T ATRNL1 Missense_Mutation p.H258Y 0.11 deleterious(0.01) possibly_damaging(0.901) TCGA-4Z-AA82-01 10 135025326 135025326 C G KNDC1 Silent p.L1400L 0.18 TCGA-4Z-AA82-01 10 22021945 22021945 C T MLLT10 Missense_Mutation p.S779L 0.24 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA82-01 10 31809791 31809791 G A ZEB1 Missense_Mutation p.E511K 0.06 tolerated(0.06) possibly_damaging(0.624) TCGA-4Z-AA82-01 10 49393641 49393641 C T FRMPD2 Missense_Mutation p.E772K 0.17 deleterious(0) possibly_damaging(0.637) TCGA-4Z-AA82-01 11 113102514 113102514 C T NCAM1 Nonsense_Mutation p.Q462* 0.13 TCGA-4Z-AA82-01 11 117969724 117969724 G A TMPRSS4 Missense_Mutation p.R23H 0.17 deleterious(0.02) possibly_damaging(0.563) TCGA-4Z-AA82-01 11 26725110 26725110 G A SLC5A12 Silent p.C263C 0.17 TCGA-4Z-AA82-01 11 618839 618839 G A CDHR5 Missense_Mutation p.P574S 0.20 tolerated(0.13) possibly_damaging(0.803) TCGA-4Z-AA82-01 11 64537454 64537454 C G SF1 Missense_Mutation p.G279A 0.83 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA82-01 11 6588265 6588265 G C DNHD1 Missense_Mutation p.Q3842H 0.08 possibly_damaging(0.717) TCGA-4Z-AA82-01 11 66469126 66469126 G T SPTBN2 Silent p.A915A 0.53 TCGA-4Z-AA82-01 11 93464713 93464713 G C KIAA1731 3'Flank 0.28 TCGA-4Z-AA82-01 12 114793788 114793788 C T TBX5 Missense_Mutation p.R369K 0.27 tolerated(0.9) benign(0.404) TCGA-4Z-AA82-01 12 117662915 117662915 G A NOS1 Silent p.N1278N 0.11 TCGA-4Z-AA82-01 12 132403819 132403819 G A ULK1 Silent p.L858L 0.61 TCGA-4Z-AA82-01 12 14975857 14975857 A - C12orf60 5'UTR 0.11 TCGA-4Z-AA82-01 12 21196285 21196285 C A SLCO1B7 Missense_Mutation p.P202T 0.13 deleterious(0.03) possibly_damaging(0.797) TCGA-4Z-AA82-01 12 50232060 50232060 C T BCDIN3D 3'UTR 0.09 TCGA-4Z-AA82-01 12 7551149 7551149 C T CD163L1 Silent p.G480G 0.15 TCGA-4Z-AA82-01 13 24466043 24466043 G A C1QTNF9B Silent p.D129D 0.42 TCGA-4Z-AA82-01 13 33222947 33222947 T A PDS5B Missense_Mutation p.I13N 0.26 deleterious(0) possibly_damaging(0.861) TCGA-4Z-AA82-01 13 75898393 75898393 T A TBC1D4 Silent p.P726P 0.20 TCGA-4Z-AA82-01 13 99374130 99374130 C G SLC15A1 Silent p.L131L 0.08 TCGA-4Z-AA82-01 14 105718907 105718907 A T BRF1 Missense_Mutation p.Y161N 0.19 deleterious(0) probably_damaging(0.988) TCGA-4Z-AA82-01 14 24702478 24702478 G T GMPR2 Missense_Mutation p.D25Y 0.08 deleterious(0.02) possibly_damaging(0.899) TCGA-4Z-AA82-01 14 24702483 24702483 G A GMPR2 Silent p.V26V 0.08 TCGA-4Z-AA82-01 14 25042800 25042800 C A CTSG 3'UTR 0.16 TCGA-4Z-AA82-01 14 77605792 77605792 C A ZDHHC22 Missense_Mutation p.C97F 0.24 deleterious(0) probably_damaging(1) TCGA-4Z-AA82-01 14 90263532 90263532 G T EFCAB11 3'UTR 0.26 TCGA-4Z-AA82-01 14 94962945 94962945 T C SERPINA12 Missense_Mutation p.K224E 0.31 tolerated(0.06) possibly_damaging(0.674) TCGA-4Z-AA82-01 15 34380319 34380319 G C EMC7 Missense_Mutation p.L171V 0.23 tolerated(0.11) benign(0.296) TCGA-4Z-AA82-01 15 43748264 43748264 G C TP53BP1 Missense_Mutation p.P848A 0.27 tolerated(0.99) benign(0.002) TCGA-4Z-AA82-01 16 1470199 1470199 G C C16orf91 Missense_Mutation p.F272L 0.07 deleterious_low_confidence(0) benign(0.086) TCGA-4Z-AA82-01 16 17352858 17352858 G A XYLT1 Silent p.F300F 0.17 TCGA-4Z-AA82-01 16 20329746 20329746 C G GP2 Silent p.L341L 0.11 TCGA-4Z-AA82-01 16 30510745 30510745 G T ITGAL Nonsense_Mutation p.E694* 0.21 TCGA-4Z-AA82-01 16 3808023 3808023 G A CREBBP Silent p.P1132P 0.11 TCGA-4Z-AA82-01 16 417715 417715 G C MRPL28 Nonsense_Mutation p.S244* 0.26 TCGA-4Z-AA82-01 16 81209296 81209296 C T PKD1L2 Missense_Mutation p.E89K 0.52 tolerated(0.89) benign(0) TCGA-4Z-AA82-01 17 29552112 29552112 G T NF1 Splice_Site p.X616_splice 0.39 TCGA-4Z-AA82-01 17 3182246 3182246 T A OR3A2 5'UTR 0.07 TCGA-4Z-AA82-01 17 38721713 38721713 C G CCR7 5'UTR 0.08 TCGA-4Z-AA82-01 17 39316919 39316919 C T KRTAP4-4 Missense_Mutation p.V9M 0.55 unknown(0) TCGA-4Z-AA82-01 17 5993727 5993727 G C WSCD1 Missense_Mutation p.C210S 0.22 deleterious(0) possibly_damaging(0.861) TCGA-4Z-AA82-01 17 61988448 61988448 G C CSHL1 Intron 0.27 TCGA-4Z-AA82-01 18 50278527 50278527 C T DCC Silent p.S65S 0.09 TCGA-4Z-AA82-01 19 37211102 37211102 C T ZNF567 Silent p.L461L 0.14 TCGA-4Z-AA82-01 19 38774321 38774321 G C SPINT2 Missense_Mutation p.W54S 0.25 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA82-01 19 48919341 48919341 C A GRIN2D Missense_Mutation p.P555H 0.14 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA82-01 19 7125375 7125375 G T INSR Silent p.V1059V 0.21 TCGA-4Z-AA82-01 1 103480069 103480069 G A COL11A1 Missense_Mutation p.R524W 0.28 probably_damaging(0.999) TCGA-4Z-AA82-01 1 109366034 109366034 C A AKNAD1 Missense_Mutation p.V709F 0.16 deleterious(0.01) probably_damaging(0.949) TCGA-4Z-AA82-01 1 115252336 115252336 G A NRAS Nonsense_Mutation p.R102* 0.11 TCGA-4Z-AA82-01 1 156823613 156823613 G A INSRR Missense_Mutation p.P190S 0.11 tolerated(0.65) benign(0.009) TCGA-4Z-AA82-01 1 158815539 158815539 C T MNDA Nonsense_Mutation p.Q245* 0.10 TCGA-4Z-AA82-01 1 158817614 158817614 G A MNDA Missense_Mutation p.E362K 0.08 tolerated(0.24) benign(0.181) TCGA-4Z-AA82-01 1 166818180 166818180 G A POGK Missense_Mutation p.E122K 0.10 deleterious_low_confidence(0.03) benign(0.025) TCGA-4Z-AA82-01 1 174418101 174418104 CTTT - GPR52 Frame_Shift_Del p.L286* 0.10 TCGA-4Z-AA82-01 1 180780546 180780546 G A XPR1 Missense_Mutation p.A229T 0.50 tolerated(0.15) benign(0.15) TCGA-4Z-AA82-01 1 193053752 193053752 C T TROVE2 Missense_Mutation p.S503L 0.06 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA82-01 1 203316624 203316624 C T FMOD Missense_Mutation p.V259I 0.18 tolerated(1) benign(0.007) TCGA-4Z-AA82-01 1 210273697 210273697 G A SYT14 Missense_Mutation p.R397H 0.19 deleterious(0.02) probably_damaging(0.988) TCGA-4Z-AA82-01 1 231902891 231902891 G T DISC1 Missense_Mutation p.S425I 0.39 tolerated(0.17) possibly_damaging(0.668) TCGA-4Z-AA82-01 1 39765930 39765930 G A MACF1 Missense_Mutation p.V849I 0.19 benign(0.414) TCGA-4Z-AA82-01 1 60139745 60139745 C G FGGY Silent p.S508S 0.23 TCGA-4Z-AA82-01 20 16253880 16253880 C T KIF16B 3'UTR 0.14 TCGA-4Z-AA82-01 20 16253924 16253924 C G KIF16B Missense_Mutation p.D495H 0.10 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA82-01 20 2464008 2464008 C A ZNF343 Missense_Mutation p.K533N 0.11 deleterious(0.01) benign(0.232) TCGA-4Z-AA82-01 20 42196350 42196350 G A SGK2 Silent p.G104G 0.31 TCGA-4Z-AA82-01 22 26860540 26860540 G A HPS4 Silent p.L352L 0.13 TCGA-4Z-AA82-01 22 26866711 26866711 G A HPS4 Silent p.L190L 0.18 TCGA-4Z-AA82-01 22 37708184 37708184 G A CYTH4 Missense_Mutation p.E361K 0.24 deleterious(0.01) benign(0.03) TCGA-4Z-AA82-01 22 50727453 50727453 G A PLXNB2 Missense_Mutation p.T396M 0.25 deleterious(0.02) benign(0.117) TCGA-4Z-AA82-01 22 51065458 51065458 C T ARSA Missense_Mutation p.C163Y 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-4Z-AA82-01 2 149227965 149227965 C T MBD5 Missense_Mutation p.T818M 0.06 deleterious(0.01) possibly_damaging(0.897) TCGA-4Z-AA82-01 2 160245982 160245982 C T BAZ2B Silent p.L1030L 0.08 TCGA-4Z-AA82-01 2 178977225 178977225 C T RBM45 5'UTR 0.21 TCGA-4Z-AA82-01 2 179365817 179365817 C T PLEKHA3 Missense_Mutation p.S230F 0.11 deleterious(0.04) benign(0.372) TCGA-4Z-AA82-01 2 182402895 182402895 T C CERKL 3'Flank 0.18 TCGA-4Z-AA82-01 2 189875383 189875383 G A COL3A1 Missense_Mutation p.G1341S 0.19 unknown(0) TCGA-4Z-AA82-01 2 207176149 207176149 C T ZDBF2 Silent p.C2299C 0.21 TCGA-4Z-AA82-01 2 219679356 219679356 G C CYP27A1 Missense_Mutation p.R451T 0.09 deleterious(0) probably_damaging(0.948) TCGA-4Z-AA82-01 2 242186512 242186512 G A HDLBP Missense_Mutation p.H593Y 0.19 deleterious(0) possibly_damaging(0.893) TCGA-4Z-AA82-01 2 55883275 55883275 C G PNPT1 Missense_Mutation p.E478Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA82-01 2 74483003 74483003 G A SLC4A5 Silent p.L308L 0.18 TCGA-4Z-AA82-01 2 97017692 97017692 A T NCAPH Missense_Mutation p.T282S 0.13 tolerated(0.14) benign(0.009) TCGA-4Z-AA82-01 3 150690271 150690271 C T CLRN1 Silent p.G75G 0.29 TCGA-4Z-AA82-01 3 77671410 77671410 C A ROBO2 Missense_Mutation p.P1212H 0.25 deleterious(0.01) benign(0.001) TCGA-4Z-AA82-01 3 86028351 86028351 C T CADM2 Silent p.P329P 0.31 TCGA-4Z-AA82-01 3 93733436 93733436 T C STX19 Missense_Mutation p.I226M 0.24 tolerated(0.34) benign(0.013) TCGA-4Z-AA82-01 3 97662093 97662093 C G CRYBG3 Missense_Mutation p.H1002D 0.17 deleterious(0) probably_damaging(0.966) TCGA-4Z-AA82-01 3 97731229 97731229 C A GABRR3 RNA 0.12 TCGA-4Z-AA82-01 4 123254823 123254823 A G KIAA1109 Silent p.S3835S 0.23 TCGA-4Z-AA82-01 4 41747866 41747866 G T PHOX2B Silent p.P301P 0.19 TCGA-4Z-AA82-01 4 6107477 6107477 G A JAKMIP1 Missense_Mutation p.T116M 0.22 tolerated(0.08) possibly_damaging(0.632) TCGA-4Z-AA82-01 4 62812837 62812837 C G LPHN3 Missense_Mutation p.I807M 0.27 deleterious(0) possibly_damaging(0.477) TCGA-4Z-AA82-01 4 69535709 69535709 C A UGT2B15 Nonsense_Mutation p.E210* 0.31 TCGA-4Z-AA82-01 5 102309957 102309957 G A PAM Missense_Mutation p.D434N 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-4Z-AA82-01 5 114472811 114472811 C T TRIM36 Missense_Mutation p.A378T 0.22 tolerated(0.07) probably_damaging(0.981) TCGA-4Z-AA82-01 5 134011728 134011728 G T SEC24A Silent p.T389T 0.37 TCGA-4Z-AA82-01 5 13700903 13700903 G A DNAH5 Silent p.D4523D 0.14 TCGA-4Z-AA82-01 5 140222622 140222622 C A PCDHA8 Silent p.G572G 0.16 TCGA-4Z-AA82-01 5 140242340 140242340 C T AC005609.1 3'UTR 0.16 TCGA-4Z-AA82-01 5 140517461 140517461 G T PCDHB5 3'UTR 0.53 TCGA-4Z-AA82-01 5 168180914 168180914 G T SLIT3 Missense_Mutation p.T595N 0.36 tolerated(0.34) benign(0.004) TCGA-4Z-AA82-01 5 272837 272837 A T PDCD6 Missense_Mutation p.D38V 0.28 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA82-01 5 64023984 64023984 C G SREK1IP1 Missense_Mutation p.K76N 0.23 tolerated(0.07) unknown(0) TCGA-4Z-AA82-01 5 78417053 78417053 G A BHMT Missense_Mutation p.V164I 0.20 tolerated(0.18) benign(0.01) TCGA-4Z-AA82-01 5 89910681 89910681 C A GPR98 Missense_Mutation p.L18I 0.15 possibly_damaging(0.636) TCGA-4Z-AA82-01 6 100841370 100841370 C G SIM1 Missense_Mutation p.R521S 0.27 tolerated_low_confidence(0.9) benign(0.005) TCGA-4Z-AA82-01 6 107390189 107390189 C T BEND3 Missense_Mutation p.V736M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA82-01 6 111696058 111696058 G C REV3L Missense_Mutation p.T1167S 0.45 tolerated_low_confidence(0.4) benign(0.001) TCGA-4Z-AA82-01 6 136597481 136597481 A C BCLAF1 Missense_Mutation p.F394L 0.10 deleterious(0.01) benign(0.294) TCGA-4Z-AA82-01 6 155450823 155450823 C T TIAM2 Missense_Mutation p.R156C 0.17 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-4Z-AA82-01 6 170627481 170627481 G A FAM120B Missense_Mutation p.A335T 0.45 tolerated(0.12) benign(0.002) TCGA-4Z-AA82-01 6 42626499 42626499 A G UBR2 Missense_Mutation p.N1060S 0.48 deleterious(0.01) probably_damaging(0.979) TCGA-4Z-AA82-01 7 100663442 100663442 T C MUC17 Missense_Mutation p.L9P 0.44 benign(0) TCGA-4Z-AA82-01 7 21640753 21640753 G C DNAH11 Missense_Mutation p.W1127C 0.07 probably_damaging(0.997) TCGA-4Z-AA82-01 7 32582813 32582813 G A AVL9 Missense_Mutation p.E52K 0.21 tolerated(0.12) benign(0.021) TCGA-4Z-AA82-01 7 48318507 48318507 A G ABCA13 Silent p.E2572E 0.06 TCGA-4Z-AA82-01 7 75177109 75177109 C G HIP1 Missense_Mutation p.E803D 0.23 tolerated(0.5) benign(0.02) TCGA-4Z-AA82-01 7 97482681 97482681 G - ASNS Frame_Shift_Del p.P419Hfs*3 0.09 TCGA-4Z-AA82-01 8 140631204 140631204 T A KCNK9 Missense_Mutation p.K141M 0.27 deleterious(0.02) benign(0.254) TCGA-4Z-AA82-01 8 141582961 141582961 C T AGO2 Missense_Mutation p.G96S 0.13 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA82-01 8 24190240 24190240 G A ADAM28 Missense_Mutation p.G450E 0.13 deleterious(0.02) possibly_damaging(0.585) TCGA-4Z-AA82-01 8 26628084 26628084 C T ADRA1A Missense_Mutation p.C328Y 0.67 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA82-01 8 33449481 33449481 G A DUSP26 3'UTR 0.54 TCGA-4Z-AA82-01 9 130742380 130742380 G C FAM102A Missense_Mutation p.Q13E 0.05 deleterious(0.02) possibly_damaging(0.476) TCGA-4Z-AA82-01 9 131046893 131046893 C G SWI5 Missense_Mutation p.I177M 0.17 deleterious(0) probably_damaging(0.98) TCGA-4Z-AA82-01 9 134497234 134497234 G T RAPGEF1 Silent p.S619S 0.19 TCGA-4Z-AA82-01 9 137293678 137293679 - T RXRA Frame_Shift_Ins p.M77Ifs*104 0.13 TCGA-4Z-AA82-01 9 139720247 139720247 G - RABL6 Frame_Shift_Del p.K95Rfs*7 0.30 TCGA-4Z-AA82-01 9 18753450 18753450 C A ADAMTSL1 Missense_Mutation p.Q721K 0.25 tolerated(0.05) possibly_damaging(0.755) TCGA-4Z-AA82-01 9 78796493 78796493 C T PCSK5 Missense_Mutation p.S728L 0.37 tolerated(0.13) benign(0.003) TCGA-4Z-AA82-01 9 8470997 8470997 C T PTPRD Missense_Mutation p.E1168K 0.31 deleterious(0.01) benign(0.103) TCGA-4Z-AA82-01 9 99795330 99795330 G T CTSV Missense_Mutation p.S302R 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-4Z-AA82-01 X 131348329 131348329 C A RAP2C Missense_Mutation p.C140F 0.19 deleterious(0) probably_damaging(0.944) TCGA-4Z-AA82-01 X 134494463 134494463 G A ZNF449 Missense_Mutation p.G340E 0.27 tolerated(0.19) possibly_damaging(0.756) TCGA-4Z-AA82-01 X 149638528 149638528 C T MAMLD1 Missense_Mutation p.S203L 0.24 deleterious(0) possibly_damaging(0.604) TCGA-4Z-AA82-01 X 34149632 34149632 C T FAM47A Missense_Mutation p.R255H 0.76 tolerated(0.37) probably_damaging(0.928) TCGA-4Z-AA82-01 X 44966757 44966757 A - KDM6A Frame_Shift_Del p.A1328Lfs*28 0.47 TCGA-4Z-AA82-01 X 50129552 50129552 C G DGKK RNA 0.27 TCGA-4Z-AA83-01 10 16967341 16967341 G C CUBN Nonsense_Mutation p.S2182* 0.38 TCGA-4Z-AA83-01 10 43292234 43292234 A G BMS1 Silent p.E514E 0.31 TCGA-4Z-AA83-01 10 74803688 74803688 C T P4HA1 Intron 0.14 TCGA-4Z-AA83-01 10 85901216 85901216 A G GHITM Splice_Site 0.35 TCGA-4Z-AA83-01 11 117232655 117232655 C T CEP164 Silent p.S166S 0.37 TCGA-4Z-AA83-01 11 13750364 13750364 C T FAR1 3'UTR 0.38 TCGA-4Z-AA83-01 11 62748774 62748774 C T SLC22A6 Silent p.R293R 0.33 TCGA-4Z-AA83-01 11 75282841 75282841 C A SERPINH1 Missense_Mutation p.L324M 0.29 tolerated(0.32) probably_damaging(0.97) TCGA-4Z-AA83-01 11 88780486 88780486 G T GRM5 Missense_Mutation p.F185L 0.43 deleterious(0.01) benign(0.257) TCGA-4Z-AA83-01 12 108134989 108134989 C T PRDM4 Missense_Mutation p.C553Y 0.14 deleterious(0.02) probably_damaging(0.991) TCGA-4Z-AA83-01 12 113400619 113400619 C T OAS3 Nonsense_Mutation p.Q666* 0.38 TCGA-4Z-AA83-01 12 46244184 46244184 C T ARID2 Nonsense_Mutation p.Q760* 0.82 TCGA-4Z-AA83-01 12 52078052 52078052 T C SCN8A Missense_Mutation p.I124T 0.29 tolerated(0.47) benign(0.05) TCGA-4Z-AA83-01 12 53668745 53668745 C T ESPL1 Missense_Mutation p.R551W 0.24 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA83-01 12 75804439 75804439 G T GLIPR1L2 Missense_Mutation p.D154Y 0.12 tolerated(0.16) possibly_damaging(0.805) TCGA-4Z-AA83-01 12 81111064 81111064 C T MYF5 Silent p.A74A 0.44 TCGA-4Z-AA83-01 13 51969576 51969576 G T INTS6 Missense_Mutation p.T158N 0.37 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA83-01 14 24633854 24633854 C T IRF9 Silent p.N227N 0.43 TCGA-4Z-AA83-01 14 52781712 52781712 C T PTGER2 Missense_Mutation p.S149L 0.39 deleterious(0.03) benign(0.212) TCGA-4Z-AA83-01 14 61439082 61439082 G A TRMT5 3'UTR 0.24 TCGA-4Z-AA83-01 14 69259761 69259761 G A ZFP36L1 5'UTR 0.29 TCGA-4Z-AA83-01 14 77492996 77492996 G A IRF2BPL Silent p.L380L 0.46 TCGA-4Z-AA83-01 14 92088187 92088187 C T CATSPERB Silent p.K675K 0.41 TCGA-4Z-AA83-01 15 25223418 25223418 T C SNRPN Missense_Mutation p.I213T 0.36 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA83-01 15 41859598 41859598 T C TYRO3 Missense_Mutation p.V275A 0.30 tolerated(0.81) benign(0.217) TCGA-4Z-AA83-01 15 50534610 50534610 G A HDC Silent p.V612V 0.32 TCGA-4Z-AA83-01 16 67865151 67865151 C T CENPT Missense_Mutation p.R224Q 0.35 tolerated(1) benign(0) TCGA-4Z-AA83-01 17 17699846 17699847 - G RAI1 Frame_Shift_Ins p.E1196Gfs*21 0.42 TCGA-4Z-AA83-01 17 33269833 33269833 G A CCT6B Missense_Mutation p.S236L 0.21 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA83-01 17 38508601 38508601 C T RARA Missense_Mutation p.R217C 0.43 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA83-01 17 39041346 39041346 G A KRT20 Missense_Mutation p.T31M 0.37 tolerated(0.18) benign(0.004) TCGA-4Z-AA83-01 17 42824819 42824819 G A DBF4B Missense_Mutation p.D334N 0.39 deleterious(0) probably_damaging(1) TCGA-4Z-AA83-01 17 4725184 4725184 C T PLD2 Silent p.N853N 0.39 TCGA-4Z-AA83-01 17 62018033 62018033 C A SCN4A 3'UTR 0.47 TCGA-4Z-AA83-01 17 7129299 7129299 G A DVL2 Missense_Mutation p.P699L 0.38 deleterious(0) probably_damaging(0.913) TCGA-4Z-AA83-01 18 31325635 31325635 C T ASXL3 Silent p.P1941P 0.69 TCGA-4Z-AA83-01 18 48593519 48593519 G A SMAD4 Missense_Mutation p.D424N 0.72 deleterious(0) possibly_damaging(0.77) TCGA-4Z-AA83-01 18 55351394 55351394 C T ATP8B1 Missense_Mutation p.D502N 0.69 deleterious(0.02) probably_damaging(1) TCGA-4Z-AA83-01 19 11568911 11568911 G A ELAVL3 Silent p.Y226Y 0.31 TCGA-4Z-AA83-01 19 12060829 12060829 C G ZNF700 Missense_Mutation p.Q664E 0.47 tolerated(0.05) benign(0.227) TCGA-4Z-AA83-01 19 12061171 12061171 C G ZNF700 3'UTR 0.36 TCGA-4Z-AA83-01 19 12504169 12504169 A G ZNF799 Silent p.C24C 0.69 TCGA-4Z-AA83-01 19 14752244 14752244 C A EMR3 Missense_Mutation p.R412L 0.24 deleterious(0.02) possibly_damaging(0.514) TCGA-4Z-AA83-01 19 22171637 22171637 C T ZNF208 Silent p.Q26Q 0.47 TCGA-4Z-AA83-01 19 36362584 36362584 G A APLP1 Missense_Mutation p.R203H 0.44 tolerated(0.51) probably_damaging(0.995) TCGA-4Z-AA83-01 19 45854681 45854681 G A ERCC2 3'UTR 0.44 TCGA-4Z-AA83-01 1 145586858 145586858 C G NUDT17 Missense_Mutation p.R277T 0.35 deleterious(0.02) benign(0.178) TCGA-4Z-AA83-01 1 151260131 151260131 G A ZNF687 Missense_Mutation p.R455Q 0.50 tolerated(0.26) benign(0.285) TCGA-4Z-AA83-01 1 152193158 152193158 G A HRNR Missense_Mutation p.S316L 0.43 unknown(0) TCGA-4Z-AA83-01 1 158623104 158623104 G T SPTA1 Missense_Mutation p.P1050T 0.42 tolerated(0.25) possibly_damaging(0.662) TCGA-4Z-AA83-01 1 229676448 229676448 C G ABCB10 Missense_Mutation p.E370Q 0.40 deleterious(0) probably_damaging(1) TCGA-4Z-AA83-01 1 234541779 234541779 G A TARBP1 Nonsense_Mutation p.R1287* 0.51 TCGA-4Z-AA83-01 1 23758280 23758280 C T ASAP3 Missense_Mutation p.E819K 0.44 deleterious_low_confidence(0.04) benign(0.006) TCGA-4Z-AA83-01 1 2411267 2411267 C T PLCH2 Silent p.F95F 0.43 TCGA-4Z-AA83-01 1 43885491 43885491 G A SZT2 Silent p.G322G 0.06 TCGA-4Z-AA83-01 1 51826874 51826874 G A EPS15 Missense_Mutation p.A838V 0.35 tolerated(0.24) benign(0.021) TCGA-4Z-AA83-01 1 74835125 74835125 G A FPGT-TNNI3K Missense_Mutation p.R622Q 0.45 tolerated(0.33) benign(0.106) TCGA-4Z-AA83-01 1 8395589 8395589 C T SLC45A1 Silent p.L512L 0.42 TCGA-4Z-AA83-01 1 93705002 93705002 G C CCDC18 Missense_Mutation p.K966N 0.48 deleterious(0.01) possibly_damaging(0.549) TCGA-4Z-AA83-01 20 2820464 2820464 T G PCED1A Missense_Mutation p.N32T 0.53 deleterious(0) probably_damaging(1) TCGA-4Z-AA83-01 20 32264924 32264924 G C E2F1 Silent p.L351L 0.32 TCGA-4Z-AA83-01 20 37580637 37580637 C A FAM83D Missense_Mutation p.T441N 0.21 deleterious(0) possibly_damaging(0.807) TCGA-4Z-AA83-01 20 44470602 44470602 G C ACOT8 Intron 0.39 TCGA-4Z-AA83-01 21 28296366 28296366 C T ADAMTS5 3'UTR 0.33 TCGA-4Z-AA83-01 21 44524472 44524472 G T U2AF1 Missense_Mutation p.H29N 0.28 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA83-01 22 38822649 38822649 G C KCNJ4 3'UTR 0.40 TCGA-4Z-AA83-01 22 38823466 38823466 G C KCNJ4 Missense_Mutation p.I224M 0.48 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA83-01 2 179326082 179326082 G C DFNB59 3'UTR 0.33 TCGA-4Z-AA83-01 2 179414019 179414019 T A TTN Silent p.T30778T 0.44 TCGA-4Z-AA83-01 2 179582808 179582808 C T TTN Missense_Mutation p.A8309T 0.41 TCGA-4Z-AA83-01 2 183129107 183129107 C A PDE1A Missense_Mutation p.D46Y 0.20 deleterious(0) probably_damaging(0.945) TCGA-4Z-AA83-01 2 209210818 209210818 C T PIKFYVE Missense_Mutation p.P1719L 0.45 tolerated_low_confidence(0.07) benign(0.008) TCGA-4Z-AA83-01 2 215884514 215884514 G C ABCA12 Missense_Mutation p.Q432E 0.52 tolerated(0.05) possibly_damaging(0.469) TCGA-4Z-AA83-01 2 233398755 233398755 G A CHRND Missense_Mutation p.E388K 0.42 deleterious(0.01) possibly_damaging(0.801) TCGA-4Z-AA83-01 2 234591029 234591029 C T UGT1A7 Missense_Mutation p.P149L 0.45 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA83-01 2 75196537 75196537 T C POLE4 Silent p.G114G 0.36 TCGA-4Z-AA83-01 3 1414004 1414004 C A CNTN6 Missense_Mutation p.P505Q 0.34 tolerated(0.05) probably_damaging(0.984) TCGA-4Z-AA83-01 3 14770077 14770077 C G C3orf20 Missense_Mutation p.Q608E 0.55 tolerated(0.1) benign(0.101) TCGA-4Z-AA83-01 3 157840066 157840066 G A RSRC1 Missense_Mutation p.R58H 0.29 tolerated_low_confidence(0.26) unknown(0) TCGA-4Z-AA83-01 4 100869656 100869656 G A H2AFZ Missense_Mutation p.S117F 0.46 deleterious(0.02) possibly_damaging(0.587) TCGA-4Z-AA83-01 4 158224891 158224891 G C GRIA2 Missense_Mutation p.L139F 0.30 deleterious(0.03) possibly_damaging(0.81) TCGA-4Z-AA83-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.74 deleterious(0.01) possibly_damaging(0.594) TCGA-4Z-AA83-01 4 186379493 186379493 C T CCDC110 Missense_Mutation p.V750I 0.35 tolerated(0.06) possibly_damaging(0.622) TCGA-4Z-AA83-01 4 46930543 46930543 G A GABRA4 Missense_Mutation p.S455F 0.42 deleterious_low_confidence(0.01) benign(0.278) TCGA-4Z-AA83-01 4 68492087 68492087 C T UBA6 Missense_Mutation p.A837T 0.28 tolerated(0.4) benign(0.002) TCGA-4Z-AA83-01 4 74354454 74354454 T G AFM Missense_Mutation p.V274G 0.06 tolerated(0.1) benign(0.075) TCGA-4Z-AA83-01 4 76878477 76878477 C T SDAD1 Splice_Site p.X618_splice 0.38 TCGA-4Z-AA83-01 5 132569152 132569152 G A FSTL4 Silent p.S324S 0.22 TCGA-4Z-AA83-01 5 137495798 137495798 C T BRD8 Missense_Mutation p.R831Q 0.41 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA83-01 5 156991 156991 C A PLEKHG4B Silent p.R462R 0.42 TCGA-4Z-AA83-01 5 176316680 176316680 C T HK3 Silent p.P232P 0.19 TCGA-4Z-AA83-01 5 65346707 65346707 C T ERBB2IP Missense_Mutation p.S667L 0.27 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA83-01 6 117704596 117704596 C A ROS1 Missense_Mutation p.V794L 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-4Z-AA83-01 6 166778893 166778893 G A MPC1 3'UTR 0.21 TCGA-4Z-AA83-01 6 31632249 31632249 G A GPANK1 Missense_Mutation p.R3W 0.26 deleterious(0.04) benign(0.007) TCGA-4Z-AA83-01 6 32164180 32164180 C T NOTCH4 Nonsense_Mutation p.W1740* 0.34 TCGA-4Z-AA83-01 6 71234601 71234601 A C FAM135A Missense_Mutation p.N605T 0.25 tolerated(0.42) benign(0.005) TCGA-4Z-AA83-01 7 141450136 141450136 G A SSBP1 Silent p.Q143Q 0.20 TCGA-4Z-AA83-01 7 151873694 151873694 G - KMT2C Frame_Shift_Del p.N2949Ifs*10 0.29 TCGA-4Z-AA83-01 7 39125585 39125585 G A POU6F2 Silent p.A48A 0.64 TCGA-4Z-AA83-01 7 40102457 40102457 G A CDK13 Nonsense_Mutation p.W878* 0.39 TCGA-4Z-AA83-01 7 73731833 73731833 C A CLIP2 5'UTR 0.39 TCGA-4Z-AA83-01 7 91842569 91842569 G C KRIT1 Silent p.V655V 0.46 TCGA-4Z-AA83-01 8 100847780 100847780 T C VPS13B Silent p.F3277F 0.35 TCGA-4Z-AA83-01 8 110984553 110984553 G A KCNV1 Missense_Mutation p.R309C 0.41 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA83-01 8 32621397 32621397 C T NRG1 Missense_Mutation p.A472V 0.34 tolerated(0.23) benign(0.016) TCGA-4Z-AA83-01 8 32621949 32621949 T C NRG1 3'UTR 0.29 TCGA-4Z-AA83-01 8 48887364 48887364 C G MCM4 Nonsense_Mutation p.S736* 0.34 TCGA-4Z-AA83-01 8 67479134 67479134 C G MYBL1 Missense_Mutation p.A608P 0.19 tolerated(0.28) benign(0.001) TCGA-4Z-AA83-01 9 135797314 135797314 G C TSC1 Nonsense_Mutation p.Y185* 0.64 TCGA-4Z-AA83-01 9 18504838 18504838 C A ADAMTSL1 Silent p.T25T 0.31 TCGA-4Z-AA83-01 X 123205034 123205034 C T STAG2 Silent p.F798F 0.74 TCGA-4Z-AA83-01 X 123205142 123205142 C T STAG2 Silent p.F834F 0.77 TCGA-4Z-AA83-01 X 153069338 153069338 C G PDZD4 Missense_Mutation p.E594Q 0.62 deleterious(0.04) benign(0.421) TCGA-4Z-AA83-01 X 27766060 27766060 C G DCAF8L2 Missense_Mutation p.Q350E 0.84 tolerated(0.31) benign(0.053) TCGA-4Z-AA83-01 X 44922720 44922726 AACAGCT - KDM6A Frame_Shift_Del p.A529Hfs*17 0.77 TCGA-4Z-AA84-01 10 102799424 102799424 C T SFXN3 3'UTR 0.21 TCGA-4Z-AA84-01 10 103281473 103281473 G A BTRC Silent p.K134K 0.26 TCGA-4Z-AA84-01 10 104157414 104157414 A G NFKB2 Silent p.P211P 0.48 TCGA-4Z-AA84-01 10 104591349 104591349 C T CYP17A1 Missense_Mutation p.D387N 0.57 tolerated(0.29) possibly_damaging(0.876) TCGA-4Z-AA84-01 10 127524879 127524879 T C BCCIP Intron 0.58 TCGA-4Z-AA84-01 10 128193480 128193480 G A C10orf90 Missense_Mutation p.H97Y 0.54 deleterious(0.04) benign(0.434) TCGA-4Z-AA84-01 10 129845660 129845660 C T PTPRE Missense_Mutation p.P39L 0.47 deleterious_low_confidence(0.01) benign(0.016) TCGA-4Z-AA84-01 10 15760796 15760796 C T ITGA8 Silent p.A104A 0.16 TCGA-4Z-AA84-01 10 18280178 18280178 T C SLC39A12 Silent p.H456H 0.43 TCGA-4Z-AA84-01 10 22839618 22839618 G A PIP4K2A Silent p.V254V 0.14 TCGA-4Z-AA84-01 10 26491923 26491923 C T MYO3A Silent p.F1539F 0.46 TCGA-4Z-AA84-01 10 30336525 30336525 G A KIAA1462 Missense_Mutation p.R73C 0.47 deleterious(0.02) benign(0.055) TCGA-4Z-AA84-01 10 50725148 50725148 G C ERCC6-PGBD3 Missense_Mutation p.L473V 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-4Z-AA84-01 10 52103835 52103835 C T SGMS1 Missense_Mutation p.D14N 0.27 tolerated(0.51) benign(0.004) TCGA-4Z-AA84-01 10 5805102 5805102 G A FAM208B 3'UTR 0.50 TCGA-4Z-AA84-01 10 61822996 61822996 C T ANK3 Silent p.S4156S 0.31 TCGA-4Z-AA84-01 10 61965628 61965628 A G ANK3 Silent p.H405H 0.41 TCGA-4Z-AA84-01 10 63661479 63661479 A C ARID5B Missense_Mutation p.N4T 0.39 deleterious(0) possibly_damaging(0.507) TCGA-4Z-AA84-01 10 64136491 64136491 T C ZNF365 Missense_Mutation p.I180T 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4Z-AA84-01 10 64967788 64967788 T C JMJD1C Missense_Mutation p.H1214R 0.09 tolerated(0.09) possibly_damaging(0.627) TCGA-4Z-AA84-01 10 71392812 71392812 G A C10orf35 Silent p.R121R 0.12 TCGA-4Z-AA84-01 10 73545471 73545471 G T CDH23 Silent p.P1937P 0.44 TCGA-4Z-AA84-01 10 74833573 74833573 T C P4HA1 Missense_Mutation p.D30G 0.48 tolerated(0.11) probably_damaging(1) TCGA-4Z-AA84-01 10 75005770 75005770 G A DNAJC9 Silent p.I162I 0.42 TCGA-4Z-AA84-01 10 75289370 75289370 G A USP54 Intron 0.41 TCGA-4Z-AA84-01 10 7786165 7786165 C G ITIH2 Missense_Mutation p.T777S 0.17 tolerated(0.17) probably_damaging(0.992) TCGA-4Z-AA84-01 10 95141008 95141008 G A MYOF Missense_Mutation p.S615L 0.49 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA84-01 10 95276705 95276705 A G CEP55 Silent p.E231E 0.69 TCGA-4Z-AA84-01 11 106579265 106579267 CGC - GUCY1A2 In_Frame_Del p.R686del 0.36 TCGA-4Z-AA84-01 11 108160488 108160488 C T ATM Nonsense_Mutation p.R1466* 0.40 TCGA-4Z-AA84-01 11 108464218 108464218 C T EXPH5 Missense_Mutation p.E16K 0.29 deleterious(0) possibly_damaging(0.766) TCGA-4Z-AA84-01 11 116660888 116660888 G A APOA5 Missense_Mutation p.H353Y 0.35 tolerated(1) benign(0) TCGA-4Z-AA84-01 11 117651426 117651426 G T DSCAML1 Missense_Mutation p.A109D 0.12 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 11 118869194 118869194 G A CCDC84 Missense_Mutation p.E59K 0.14 deleterious(0.01) probably_damaging(0.932) TCGA-4Z-AA84-01 11 120856885 120856885 G A GRIK4 Silent p.Q929Q 0.59 TCGA-4Z-AA84-01 11 122830047 122830047 G T C11orf63 Missense_Mutation p.G744V 0.20 tolerated(0.12) benign(0.153) TCGA-4Z-AA84-01 11 124007358 124007358 T A VWA5A Silent p.P534P 0.14 TCGA-4Z-AA84-01 11 1251361 1251361 C G MUC5B Nonsense_Mutation p.Y449* 0.16 TCGA-4Z-AA84-01 11 130318930 130318930 C T ADAMTS15 Missense_Mutation p.P21L 0.32 tolerated(0.7) benign(0.001) TCGA-4Z-AA84-01 11 2411732 2411732 C T CD81 Missense_Mutation p.P53S 0.17 tolerated(0.72) benign(0.011) TCGA-4Z-AA84-01 11 32955870 32955870 A G QSER1 Silent p.S893S 0.66 TCGA-4Z-AA84-01 11 55038329 55038329 A T TRIM48 3'UTR 0.17 TCGA-4Z-AA84-01 11 55607106 55607106 T A OR5D16 Missense_Mutation p.S293R 0.16 deleterious(0) probably_damaging(0.953) TCGA-4Z-AA84-01 11 56431699 56431699 G A OR5AR1 Missense_Mutation p.E180K 0.09 deleterious(0) possibly_damaging(0.887) TCGA-4Z-AA84-01 11 57156097 57156097 C T PRG2 Missense_Mutation p.A151T 0.23 tolerated(0.73) benign(0.002) TCGA-4Z-AA84-01 11 63230897 63230897 G C HRASLS5 3'UTR 0.35 TCGA-4Z-AA84-01 11 63304284 63304284 C T RARRES3 5'Flank 0.26 TCGA-4Z-AA84-01 11 64681298 64681298 C A ATG2A Silent p.V195V 0.36 TCGA-4Z-AA84-01 11 65048496 65048496 G A POLA2 Missense_Mutation p.D260N 0.23 deleterious(0.04) possibly_damaging(0.847) TCGA-4Z-AA84-01 11 66636334 66636334 G A PC Silent p.V335V 0.26 TCGA-4Z-AA84-01 11 67191688 67191688 T C CARNS1 Silent p.R823R 0.23 TCGA-4Z-AA84-01 11 67412329 67412329 G A ACY3 Missense_Mutation p.P216S 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA84-01 11 6816074 6816074 A G OR6A2 Missense_Mutation p.L289S 0.52 tolerated(0.05) possibly_damaging(0.897) TCGA-4Z-AA84-01 11 68566745 68566745 C T CPT1A Missense_Mutation p.G212S 0.25 tolerated(0.55) benign(0.016) TCGA-4Z-AA84-01 11 70052282 70052282 A G FADD Silent p.K110K 0.14 TCGA-4Z-AA84-01 11 71711602 71711602 G A IL18BP Silent p.L78L 0.24 TCGA-4Z-AA84-01 11 73076952 73076952 C A ARHGEF17 Missense_Mutation p.F1985L 0.29 deleterious(0.03) benign(0.349) TCGA-4Z-AA84-01 11 7950075 7950075 A G OR10A6 Silent p.I45I 0.42 TCGA-4Z-AA84-01 11 82645075 82645075 G A C11orf82 Missense_Mutation p.E899K 0.31 deleterious(0.02) possibly_damaging(0.543) TCGA-4Z-AA84-01 11 85435989 85435989 T C SYTL2 Missense_Mutation p.Y504C 0.24 tolerated(0.2) benign(0.006) TCGA-4Z-AA84-01 11 93471565 93471565 C T TAF1D Missense_Mutation p.E57K 0.29 tolerated(0.58) benign(0.006) TCGA-4Z-AA84-01 11 94278138 94278138 T C FUT4 Missense_Mutation p.L280P 0.38 deleterious(0.01) possibly_damaging(0.828) TCGA-4Z-AA84-01 12 106763087 106763087 G A POLR3B Missense_Mutation p.E88K 0.16 tolerated(0.2) benign(0.051) TCGA-4Z-AA84-01 12 113830899 113830899 A G SDS Silent p.Y278Y 0.44 TCGA-4Z-AA84-01 12 115120991 115120991 C T TBX3 Missense_Mutation p.M5I 0.44 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA84-01 12 116445438 116445438 G A MED13L Silent p.L672L 0.15 TCGA-4Z-AA84-01 12 117696870 117696870 G T NOS1 Silent p.T811T 0.42 TCGA-4Z-AA84-01 12 121868273 121868273 C T KDM2B Splice_Site p.X1277_splice 0.15 TCGA-4Z-AA84-01 12 125478519 125478519 C T BRI3BP Silent p.F61F 0.71 TCGA-4Z-AA84-01 12 126138480 126138480 G A TMEM132B Missense_Mutation p.E821K 0.45 tolerated(0.8) benign(0.124) TCGA-4Z-AA84-01 12 133306451 133306451 C T ANKLE2 Missense_Mutation p.R766K 0.48 tolerated(0.52) benign(0.01) TCGA-4Z-AA84-01 12 14650794 14650794 T G ATF7IP Silent p.A1200A 0.15 TCGA-4Z-AA84-01 12 20874764 20874764 C T SLCO1C1 Missense_Mutation p.P268S 0.24 tolerated(1) benign(0.034) TCGA-4Z-AA84-01 12 22213804 22213804 T C CMAS Silent p.H244H 0.61 TCGA-4Z-AA84-01 12 22215214 22215214 G T CMAS Splice_Site p.X321_splice 0.33 TCGA-4Z-AA84-01 12 40716969 40716969 C G LRRK2 Silent p.L1839L 0.22 TCGA-4Z-AA84-01 12 46243484 46243484 C T ARID2 Nonsense_Mutation p.Q613* 0.36 TCGA-4Z-AA84-01 12 46322330 46322330 A G SCAF11 Missense_Mutation p.L385S 0.35 tolerated(0.17) benign(0.029) TCGA-4Z-AA84-01 12 47472748 47472748 C T AMIGO2 Missense_Mutation p.G13E 0.38 deleterious_low_confidence(0.01) benign(0.343) TCGA-4Z-AA84-01 12 48179546 48179546 G A HDAC7 Silent p.L899L 0.36 TCGA-4Z-AA84-01 12 4853708 4853708 G A GALNT8 Silent p.E234E 0.50 TCGA-4Z-AA84-01 12 49418419 49418419 T C KMT2D Missense_Mutation p.M5332V 0.47 unknown(0) TCGA-4Z-AA84-01 12 5021465 5021465 C G KCNA1 Silent p.R307R 0.60 TCGA-4Z-AA84-01 12 51442197 51442197 C T LETMD1 Missense_Mutation p.P20S 0.10 deleterious(0.03) benign(0.007) TCGA-4Z-AA84-01 12 52789989 52789989 C T KRT82 Missense_Mutation p.E366K 0.19 deleterious(0.02) benign(0.223) TCGA-4Z-AA84-01 12 52946458 52946458 T C KRT71 Missense_Mutation p.K135R 0.39 deleterious(0.01) possibly_damaging(0.852) TCGA-4Z-AA84-01 12 53776448 53776471 AGGCCTGGCTAATAATGTACTCTC - SP1 In_Frame_Del p.L241_G248del 0.12 TCGA-4Z-AA84-01 12 54675244 54675244 G A HNRNPA1 Silent p.L30L 0.19 TCGA-4Z-AA84-01 12 56572617 56572617 C T SMARCC2 Missense_Mutation p.E386K 0.40 tolerated(0.12) benign(0.292) TCGA-4Z-AA84-01 12 56720491 56720491 T A PAN2 Missense_Mutation p.D391V 0.44 tolerated(0.13) benign(0.295) TCGA-4Z-AA84-01 12 56822693 56822693 G A TIMELESS Silent p.R426R 0.46 TCGA-4Z-AA84-01 12 58013971 58013971 C T SLC26A10 5'UTR 0.29 TCGA-4Z-AA84-01 12 64891001 64891001 G A TBK1 Missense_Mutation p.E641K 0.41 tolerated(0.53) benign(0.025) TCGA-4Z-AA84-01 12 7046142 7046142 C T ATN1 Missense_Mutation p.S571F 0.13 possibly_damaging(0.722) TCGA-4Z-AA84-01 12 71095032 71095032 G C PTPRR Missense_Mutation p.P360R 0.33 tolerated(0.26) benign(0.128) TCGA-4Z-AA84-01 12 72667110 72667110 T C TRHDE Silent p.A184A 0.31 TCGA-4Z-AA84-01 12 80735899 80735899 T C OTOGL Missense_Mutation p.I1732T 0.38 deleterious(0) benign(0.026) TCGA-4Z-AA84-01 12 86268211 86268211 A G NTS Silent p.V10V 0.47 TCGA-4Z-AA84-01 12 8866636 8866636 G A RIMKLB Silent p.L58L 0.10 TCGA-4Z-AA84-01 12 9346780 9346780 A G PZP Missense_Mutation p.S383P 0.17 tolerated(0.23) benign(0.276) TCGA-4Z-AA84-01 13 31216887 31216887 C T USPL1 Nonsense_Mutation p.Q369* 0.23 TCGA-4Z-AA84-01 13 32818201 32818201 G C FRY Missense_Mutation p.S2237T 0.07 deleterious(0.04) possibly_damaging(0.791) TCGA-4Z-AA84-01 13 39621995 39621995 G A NHLRC3 Missense_Mutation p.E326K 0.05 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA84-01 13 45149841 45149841 T C TSC22D1 Missense_Mutation p.S124G 0.66 deleterious(0.05) probably_damaging(0.977) TCGA-4Z-AA84-01 13 46287350 46287350 A T SPERT Missense_Mutation p.N64Y 0.15 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-4Z-AA84-01 13 67799917 67799917 T C PCDH9 Missense_Mutation p.T886A 0.28 deleterious(0.04) possibly_damaging(0.824) TCGA-4Z-AA84-01 13 99452629 99452629 C T DOCK9 Silent p.K1957K 0.43 TCGA-4Z-AA84-01 14 102549998 102549998 C T HSP90AA1 Silent p.K579K 0.19 TCGA-4Z-AA84-01 14 20295867 20295867 C T OR4N2 Missense_Mutation p.S87F 0.14 tolerated(0.09) benign(0.013) TCGA-4Z-AA84-01 14 21811370 21811370 A G RPGRIP1 Missense_Mutation p.H1172R 0.19 deleterious(0.02) possibly_damaging(0.883) TCGA-4Z-AA84-01 14 24601929 24601929 C T FITM1 Missense_Mutation p.A259V 0.20 tolerated(0.08) benign(0.009) TCGA-4Z-AA84-01 14 24808663 24808663 G A RIPK3 Missense_Mutation p.S54L 0.18 tolerated(0.06) probably_damaging(0.909) TCGA-4Z-AA84-01 14 34904426 34904426 T C SPTSSA Missense_Mutation p.Y66C 0.23 deleterious(0) possibly_damaging(0.751) TCGA-4Z-AA84-01 14 35331267 35331267 A T BAZ1A Silent p.I125I 0.33 TCGA-4Z-AA84-01 14 36197602 36197602 T G RALGAPA1 Missense_Mutation p.M568L 0.13 tolerated(0.26) benign(0.002) TCGA-4Z-AA84-01 14 37132434 37132434 G A PAX9 Missense_Mutation p.D113N 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-4Z-AA84-01 14 50092450 50092450 A T DNAAF2 Missense_Mutation p.I775K 0.21 deleterious(0.04) benign(0.007) TCGA-4Z-AA84-01 14 50101217 50101217 C T DNAAF2 Silent p.P217P 0.29 TCGA-4Z-AA84-01 14 60750163 60750163 G A PPM1A Missense_Mutation p.E321K 0.18 deleterious(0.04) benign(0.134) TCGA-4Z-AA84-01 14 64990048 64990048 A G ZBTB1 Missense_Mutation p.Q609R 0.46 deleterious(0.02) possibly_damaging(0.629) TCGA-4Z-AA84-01 14 67555731 67555731 A G GPHN Silent p.V392V 0.11 TCGA-4Z-AA84-01 14 69256881 69256881 C G ZFP36L1 Missense_Mutation p.C129S 0.39 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA84-01 14 69256897 69256897 C G ZFP36L1 Missense_Mutation p.E124Q 0.38 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA84-01 14 75989004 75989004 G A BATF 5'UTR 0.39 TCGA-4Z-AA84-01 14 76156532 76156532 C T TTLL5 Intron 0.38 TCGA-4Z-AA84-01 14 80677627 80677627 G A DIO2 Silent p.V63V 0.37 TCGA-4Z-AA84-01 14 89029486 89029486 C T ZC3H14 Silent p.I3I 0.64 TCGA-4Z-AA84-01 14 91739100 91739100 G A CCDC88C Missense_Mutation p.P1986S 0.28 tolerated(0.11) benign(0.033) TCGA-4Z-AA84-01 14 92136294 92136294 G A CATSPERB Missense_Mutation p.S384F 0.28 deleterious(0.04) probably_damaging(0.971) TCGA-4Z-AA84-01 14 93673293 93673293 G A C14orf142 Silent p.F30F 0.22 TCGA-4Z-AA84-01 14 96777505 96777505 C T ATG2B Silent p.Q1370Q 0.24 TCGA-4Z-AA84-01 15 101605830 101605830 T C LRRK1 Missense_Mutation p.Y1730H 0.34 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-4Z-AA84-01 15 101718237 101718237 C T CHSY1 Missense_Mutation p.D589N 0.50 tolerated(0.27) benign(0.068) TCGA-4Z-AA84-01 15 102294714 102294714 A T DNM1P47 RNA 0.15 TCGA-4Z-AA84-01 15 38800076 38800076 G T RASGRP1 Missense_Mutation p.L365M 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-4Z-AA84-01 15 40627559 40627559 C T C15orf52 Missense_Mutation p.E469K 0.62 tolerated(0.44) benign(0.013) TCGA-4Z-AA84-01 15 40916776 40916776 T C CASC5 Silent p.Y1464Y 0.58 TCGA-4Z-AA84-01 15 43891496 43891496 A T CKMT1B 3'UTR 0.41 TCGA-4Z-AA84-01 15 44905697 44905697 C T SPG11 Missense_Mutation p.E1026K 0.43 tolerated(0.1) possibly_damaging(0.801) TCGA-4Z-AA84-01 15 58302886 58302886 C A ALDH1A2 Missense_Mutation p.G152C 0.50 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA84-01 15 63852116 63852116 G A USP3 Silent p.G198G 0.42 TCGA-4Z-AA84-01 15 64004988 64004988 C T HERC1 Missense_Mutation p.E1524K 0.29 possibly_damaging(0.791) TCGA-4Z-AA84-01 15 64747339 64747339 G C TRIP4 3'UTR 0.58 TCGA-4Z-AA84-01 15 71341877 71341877 G A LRRC49 Missense_Mutation p.D668N 0.51 deleterious(0.03) probably_damaging(0.979) TCGA-4Z-AA84-01 15 72039279 72039279 G C THSD4 Silent p.T713T 0.27 TCGA-4Z-AA84-01 15 75042168 75042168 G A CYP1A2 Missense_Mutation p.G30D 0.16 tolerated(0.15) benign(0.124) TCGA-4Z-AA84-01 15 75219172 75219172 C T COX5A Missense_Mutation p.A92T 0.11 deleterious(0) probably_damaging(0.963) TCGA-4Z-AA84-01 15 76019755 76019755 A G ODF3L1 Silent p.P233P 0.47 TCGA-4Z-AA84-01 15 85383030 85383030 G A ALPK3 Missense_Mutation p.E376K 0.42 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA84-01 15 89386683 89386683 G T ACAN Missense_Mutation p.Q285H 0.65 deleterious(0.02) unknown(0) TCGA-4Z-AA84-01 15 91021045 91021045 C T IQGAP1 Missense_Mutation p.L1085F 0.57 deleterious(0.02) possibly_damaging(0.799) TCGA-4Z-AA84-01 15 99467239 99467239 G A IGF1R Missense_Mutation p.E874K 0.54 tolerated(0.1) possibly_damaging(0.507) TCGA-4Z-AA84-01 16 1510899 1510899 C A CLCN7 Silent p.G134G 0.52 TCGA-4Z-AA84-01 16 15208345 15208345 C T RP11-1186N24.5 RNA 0.30 TCGA-4Z-AA84-01 16 19533210 19533210 C T GDE1 Missense_Mutation p.R26Q 0.23 deleterious(0.01) possibly_damaging(0.859) TCGA-4Z-AA84-01 16 19711866 19711866 G A C16orf62 3'UTR 0.18 TCGA-4Z-AA84-01 16 2153703 2153703 G T PKD1 Silent p.G2785G 0.17 TCGA-4Z-AA84-01 16 23099153 23099153 A G USP31 Silent p.F473F 0.52 TCGA-4Z-AA84-01 16 28508827 28508827 G A APOBR Missense_Mutation p.R822K 0.24 tolerated(0.16) benign(0.14) TCGA-4Z-AA84-01 16 31045531 31045531 C T STX4 Intron 0.15 TCGA-4Z-AA84-01 16 31154747 31154747 T A PRSS36 Missense_Mutation p.Q339L 0.14 deleterious(0.03) benign(0.007) TCGA-4Z-AA84-01 16 31476267 31476267 G T ARMC5 Intron 0.18 TCGA-4Z-AA84-01 16 50745865 50745865 G A NOD2 Silent p.L681L 0.30 TCGA-4Z-AA84-01 16 55601052 55601052 G A CAPNS2 Silent p.V128V 0.17 TCGA-4Z-AA84-01 16 65032653 65032653 G T CDH11 Missense_Mutation p.A112D 0.18 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 16 67000659 67000659 G A CES3 Missense_Mutation p.G318D 0.09 deleterious(0.04) possibly_damaging(0.602) TCGA-4Z-AA84-01 16 67318778 67318778 G A PLEKHG4 Missense_Mutation p.E619K 0.20 tolerated(0.08) possibly_damaging(0.459) TCGA-4Z-AA84-01 16 67702366 67702366 G A C16orf86 Missense_Mutation p.E273K 0.27 tolerated(0.05) possibly_damaging(0.486) TCGA-4Z-AA84-01 16 67918015 67918015 C T EDC4 Silent p.L1390L 0.14 TCGA-4Z-AA84-01 16 69152336 69152336 C T HAS3 3'Flank 0.17 TCGA-4Z-AA84-01 16 71007829 71007829 A T HYDIN Missense_Mutation p.I1711N 0.10 possibly_damaging(0.663) TCGA-4Z-AA84-01 16 75646444 75646444 G T ADAT1 Missense_Mutation p.A247D 0.25 tolerated(0.2) benign(0.134) TCGA-4Z-AA84-01 16 75681944 75681944 G A TERF2IP Missense_Mutation p.R55Q 0.42 deleterious(0.01) possibly_damaging(0.698) TCGA-4Z-AA84-01 16 81739110 81739110 G A CMIP Missense_Mutation p.D700N 0.56 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA84-01 16 84211435 84211435 G A DNAAF1 Silent p.P722P 0.38 TCGA-4Z-AA84-01 16 84872045 84872045 C T CRISPLD2 5'UTR 0.13 TCGA-4Z-AA84-01 17 1264509 1264509 T C YWHAE Missense_Mutation p.Y152C 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-4Z-AA84-01 17 15620575 15620575 C T ZNF286A Nonsense_Mutation p.Q513* 0.24 TCGA-4Z-AA84-01 17 17380536 17380536 G A MED9 Missense_Mutation p.E61K 0.45 tolerated(0.17) benign(0.227) TCGA-4Z-AA84-01 17 18565279 18565279 G A ZNF286B Nonsense_Mutation p.Q514* 0.16 TCGA-4Z-AA84-01 17 19576480 19576480 T A ALDH3A2 Missense_Mutation p.L487Q 0.14 tolerated(0.05) possibly_damaging(0.839) TCGA-4Z-AA84-01 17 25919603 25919603 G A KSR1 Missense_Mutation p.R280K 0.53 tolerated(0.07) possibly_damaging(0.855) TCGA-4Z-AA84-01 17 27062381 27062381 G A NEK8 Missense_Mutation p.E204K 0.27 deleterious(0) possibly_damaging(0.905) TCGA-4Z-AA84-01 17 27207752 27207752 G A FLOT2 Silent p.L409L 0.52 TCGA-4Z-AA84-01 17 27893210 27893210 C T ABHD15 Missense_Mutation p.A259T 0.38 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA84-01 17 29557315 29557315 C T NF1 Nonsense_Mutation p.Q1010* 0.65 TCGA-4Z-AA84-01 17 35298106 35298106 C T LHX1 Silent p.F199F 0.80 TCGA-4Z-AA84-01 17 38066068 38066068 C A GSDMB Missense_Mutation p.D173Y 0.04 deleterious(0.01) benign(0.263) TCGA-4Z-AA84-01 17 38146155 38146155 G C PSMD3 Missense_Mutation p.E284Q 0.12 tolerated(1) probably_damaging(0.94) TCGA-4Z-AA84-01 17 38859890 38859890 C T KRT24 Missense_Mutation p.R19K 0.31 tolerated_low_confidence(0.57) unknown(0) TCGA-4Z-AA84-01 17 40061783 40061783 T A ACLY Missense_Mutation p.H332L 0.34 deleterious(0.05) benign(0.002) TCGA-4Z-AA84-01 17 42428109 42428109 G A GRN Missense_Mutation p.D217N 0.29 deleterious(0.02) benign(0.32) TCGA-4Z-AA84-01 17 43008976 43008976 G A KIF18B Missense_Mutation p.S504F 0.42 tolerated(0.47) benign(0.015) TCGA-4Z-AA84-01 17 43332964 43332978 GGCCTCCCGGAGCGG - SPATA32 In_Frame_Del p.P191_A195del 0.15 TCGA-4Z-AA84-01 17 46052586 46052586 G A CDK5RAP3 Silent p.Q132Q 0.48 TCGA-4Z-AA84-01 17 47899078 47899078 G A KAT7 Missense_Mutation p.V438M 0.38 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 17 48191718 48191718 C A SAMD14 Intron 0.42 TCGA-4Z-AA84-01 17 48273851 48273851 A T COL1A1 Silent p.G299G 0.27 TCGA-4Z-AA84-01 17 4872214 4872214 C T CAMTA2 Silent p.A1200A 0.66 TCGA-4Z-AA84-01 17 56343605 56343605 G C LPO Missense_Mutation p.K537N 0.43 deleterious(0.02) probably_damaging(0.935) TCGA-4Z-AA84-01 17 59489466 59489466 G A C17orf82 Missense_Mutation p.E44K 0.64 tolerated_low_confidence(0.64) possibly_damaging(0.502) TCGA-4Z-AA84-01 17 61417591 61417591 G T TANC2 Nonsense_Mutation p.E495* 0.31 TCGA-4Z-AA84-01 17 61432167 61432167 C T TANC2 Silent p.F592F 0.27 TCGA-4Z-AA84-01 17 62131753 62131753 C T ERN1 Missense_Mutation p.E604K 0.53 deleterious(0.02) possibly_damaging(0.803) TCGA-4Z-AA84-01 17 65186350 65186350 C T HELZ Missense_Mutation p.E227K 0.44 tolerated(0.07) possibly_damaging(0.474) TCGA-4Z-AA84-01 17 65199521 65199521 G A HELZ Missense_Mutation p.R96W 0.29 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-4Z-AA84-01 17 65907308 65907308 C G BPTF Missense_Mutation p.S1103C 0.37 probably_damaging(0.951) TCGA-4Z-AA84-01 17 66937064 66937064 T C ABCA8 Missense_Mutation p.I46V 0.25 tolerated(0.12) benign(0.002) TCGA-4Z-AA84-01 17 6927475 6927475 G A BCL6B Missense_Mutation p.E85K 0.65 deleterious(0.01) benign(0.221) TCGA-4Z-AA84-01 17 7256866 7256866 G A KCTD11 Missense_Mutation p.R202Q 0.15 tolerated(0.08) benign(0.005) TCGA-4Z-AA84-01 17 72927051 72927051 G A OTOP2 Missense_Mutation p.E441K 0.77 tolerated(0.39) possibly_damaging(0.527) TCGA-4Z-AA84-01 17 74470516 74470516 G A RHBDF2 Missense_Mutation p.S497L 0.47 deleterious(0) possibly_damaging(0.839) TCGA-4Z-AA84-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.68 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA84-01 17 78162253 78162253 G A CARD14 Silent p.L251L 0.48 TCGA-4Z-AA84-01 17 79268677 79268677 G C SLC38A10 Missense_Mutation p.I15M 0.14 deleterious(0.03) probably_damaging(0.964) TCGA-4Z-AA84-01 17 80019221 80019221 G A DUS1L Silent p.L236L 0.31 TCGA-4Z-AA84-01 17 8218509 8218509 C T ARHGEF15 Missense_Mutation p.R392C 0.37 deleterious(0.01) possibly_damaging(0.772) TCGA-4Z-AA84-01 18 10468575 10468575 C T APCDD1 Silent p.L56L 0.14 TCGA-4Z-AA84-01 18 43519662 43519662 G A EPG5 Missense_Mutation p.S668L 0.61 tolerated(0.64) benign(0) TCGA-4Z-AA84-01 18 46860154 46860154 G A DYM Silent p.F188F 0.53 TCGA-4Z-AA84-01 18 65179006 65179006 A G DSEL Missense_Mutation p.L957P 0.49 tolerated(0.12) benign(0.033) TCGA-4Z-AA84-01 18 9516934 9516934 C T RALBP1 Silent p.F112F 0.55 TCGA-4Z-AA84-01 19 10265426 10265426 G A DNMT1 Silent p.L556L 0.53 TCGA-4Z-AA84-01 19 1037663 1037663 G A CNN2 Missense_Mutation p.D232N 0.26 tolerated(0.06) benign(0.059) TCGA-4Z-AA84-01 19 10602915 10602915 G A KEAP1 Silent p.F221F 0.46 TCGA-4Z-AA84-01 19 10662922 10662922 G A ATG4D Silent p.K388K 0.17 TCGA-4Z-AA84-01 19 12386873 12386873 C T ZNF44 Missense_Mutation p.A58T 0.36 tolerated(0.09) possibly_damaging(0.458) TCGA-4Z-AA84-01 19 13345768 13345768 C T CACNA1A Missense_Mutation p.R1739Q 0.13 benign(0.011) TCGA-4Z-AA84-01 19 14627647 14627647 G A DNAJB1 Silent p.F141F 0.27 TCGA-4Z-AA84-01 19 14706107 14706107 C T CLEC17A Missense_Mutation p.P142L 0.40 deleterious(0.04) benign(0.007) TCGA-4Z-AA84-01 19 16594792 16594792 C T CALR3 Silent p.T209T 0.07 TCGA-4Z-AA84-01 19 16664403 16664403 G A SLC35E1 3'UTR 0.28 TCGA-4Z-AA84-01 19 17436060 17436060 C T ANO8 Missense_Mutation p.E933K 0.35 deleterious(0.03) unknown(0) TCGA-4Z-AA84-01 19 17535815 17535815 C T MVB12A 3'UTR 0.27 TCGA-4Z-AA84-01 19 18311166 18311166 G A RAB3A Silent p.N106N 0.31 TCGA-4Z-AA84-01 19 18343983 18343983 C T PDE4C Missense_Mutation p.G7S 0.75 tolerated_low_confidence(0.6) benign(0.001) TCGA-4Z-AA84-01 19 19049288 19049288 G A HOMER3 Silent p.I59I 0.26 TCGA-4Z-AA84-01 19 19626733 19626733 G A NDUFA13 5'UTR 0.38 TCGA-4Z-AA84-01 19 19917758 19917758 G A ZNF506 Silent p.I41I 0.40 TCGA-4Z-AA84-01 19 20308306 20308306 G A ZNF486 Missense_Mutation p.E263K 0.24 tolerated(0.08) probably_damaging(0.991) TCGA-4Z-AA84-01 19 20828525 20828525 G A ZNF626 Missense_Mutation p.T64I 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-4Z-AA84-01 19 2273027 2273027 C T OAZ1 Missense_Mutation p.P203S 0.33 deleterious(0.02) probably_damaging(0.954) TCGA-4Z-AA84-01 19 32845770 32845770 G A ZNF507 Silent p.A678A 0.11 TCGA-4Z-AA84-01 19 32874000 32874000 G A ZNF507 3'UTR 0.45 TCGA-4Z-AA84-01 19 37382477 37382477 T G ZNF829 Missense_Mutation p.K487Q 0.07 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA84-01 19 38055593 38055593 G A ZNF571 Silent p.I579I 0.06 TCGA-4Z-AA84-01 19 38135520 38135520 C A ZFP30 Missense_Mutation p.V43L 0.53 tolerated(0.13) benign(0.005) TCGA-4Z-AA84-01 19 38135527 38135527 G T ZFP30 Missense_Mutation p.S40R 0.54 tolerated(0.17) benign(0.343) TCGA-4Z-AA84-01 19 38160276 38160276 A T ZNF781 Missense_Mutation p.N258K 0.08 deleterious(0.01) unknown(0) TCGA-4Z-AA84-01 19 38160878 38160878 C A ZNF781 Missense_Mutation p.G58W 0.59 deleterious(0) probably_damaging(0.98) TCGA-4Z-AA84-01 19 39412269 39412269 C T SARS2 Intron 0.59 TCGA-4Z-AA84-01 19 40398474 40398474 C T FCGBP Missense_Mutation p.D2165N 0.11 possibly_damaging(0.822) TCGA-4Z-AA84-01 19 40827846 40827846 C T C19orf47 Silent p.Q404Q 0.53 TCGA-4Z-AA84-01 19 42566696 42566696 C T GRIK5 Missense_Mutation p.R151Q 0.47 tolerated(0.1) benign(0.054) TCGA-4Z-AA84-01 19 4284882 4284882 C T SHD Silent p.L233L 0.64 TCGA-4Z-AA84-01 19 4338785 4338785 C T STAP2 5'UTR 0.25 TCGA-4Z-AA84-01 19 44010918 44010918 G A ETHE1 3'UTR 0.47 TCGA-4Z-AA84-01 19 45872219 45872219 T C ERCC2 Missense_Mutation p.Y72C 0.22 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA84-01 19 47761887 47761887 G A CCDC9 Silent p.R25R 0.43 TCGA-4Z-AA84-01 19 49636391 49636391 C T PPFIA3 Missense_Mutation p.S338L 0.22 deleterious(0) benign(0.073) TCGA-4Z-AA84-01 19 49637056 49637056 G A PPFIA3 Missense_Mutation p.E389K 0.15 deleterious(0.05) probably_damaging(0.914) TCGA-4Z-AA84-01 19 50138762 50138762 C T RRAS 3'UTR 0.18 TCGA-4Z-AA84-01 19 54725924 54725924 C A LILRB3 Missense_Mutation p.G145V 0.21 tolerated(0.36) possibly_damaging(0.804) TCGA-4Z-AA84-01 19 56573013 56573013 C T NLRP5 3'UTR 0.17 TCGA-4Z-AA84-01 19 5687304 5687304 G A HSD11B1L Silent p.V140V 0.35 TCGA-4Z-AA84-01 19 56934756 56934756 T G ZNF583 Silent p.V243V 0.06 TCGA-4Z-AA84-01 19 57327640 57327640 G A PEG3 Missense_Mutation p.H724Y 0.15 tolerated(0.12) benign(0.099) TCGA-4Z-AA84-01 19 58238780 58238780 C T ZNF671 Silent p.A39A 0.45 TCGA-4Z-AA84-01 19 5994918 5994918 G A RFX2 Silent p.D700D 0.45 TCGA-4Z-AA84-01 19 7570448 7570448 T G C19orf45 Missense_Mutation p.L314R 0.42 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA84-01 1 10753948 10753948 C T CASZ1 5'UTR 0.16 TCGA-4Z-AA84-01 1 109380190 109380190 G A AKNAD1 Silent p.F506F 0.12 TCGA-4Z-AA84-01 1 110586410 110586410 C T STRIP1 Silent p.P406P 0.39 TCGA-4Z-AA84-01 1 116519252 116519252 G A SLC22A15 Missense_Mutation p.E2K 0.25 deleterious(0.03) benign(0.081) TCGA-4Z-AA84-01 1 117556025 117556025 C T CD101 Intron 0.15 TCGA-4Z-AA84-01 1 118624191 118624191 C T SPAG17 Missense_Mutation p.D613N 0.09 tolerated(0.18) benign(0.054) TCGA-4Z-AA84-01 1 13942425 13942425 C G PDPN 3'UTR 0.10 TCGA-4Z-AA84-01 1 145311117 145311117 C G NBPF10 Missense_Mutation p.Q606E 0.03 benign(0.022) TCGA-4Z-AA84-01 1 150772126 150772126 C T CTSK Silent p.E226E 0.09 TCGA-4Z-AA84-01 1 151065763 151065763 C G GABPB2 Missense_Mutation p.I124M 0.72 tolerated(0.06) benign(0.11) TCGA-4Z-AA84-01 1 152080459 152080459 C T TCHH Missense_Mutation p.R1745H 0.09 unknown(0) TCGA-4Z-AA84-01 1 152081719 152081719 C G TCHH Missense_Mutation p.R1325T 0.08 unknown(0) TCGA-4Z-AA84-01 1 152732188 152732188 G A KPRP Missense_Mutation p.E42K 0.13 deleterious(0.05) possibly_damaging(0.675) TCGA-4Z-AA84-01 1 153012818 153012818 G A SPRR2D Missense_Mutation p.S2F 0.66 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA84-01 1 153735292 153735292 C T INTS3 Silent p.F535F 0.58 TCGA-4Z-AA84-01 1 153921078 153921078 G C CRTC2 Missense_Mutation p.L573V 0.07 tolerated(0.07) benign(0.055) TCGA-4Z-AA84-01 1 155018444 155018444 G A DCST1 Silent p.Q416Q 0.27 TCGA-4Z-AA84-01 1 155294160 155294160 C T RUSC1 Intron 0.45 TCGA-4Z-AA84-01 1 155294730 155294730 G A RUSC1 Silent p.K484K 0.35 TCGA-4Z-AA84-01 1 158259771 158259771 G A CD1C 5'UTR 0.56 TCGA-4Z-AA84-01 1 158368544 158368544 A T OR10T2 Missense_Mutation p.F238Y 0.12 deleterious(0) possibly_damaging(0.892) TCGA-4Z-AA84-01 1 158746945 158746945 T G OR6N2 Missense_Mutation p.I161L 0.10 tolerated(0.11) benign(0.403) TCGA-4Z-AA84-01 1 158746948 158746948 C A OR6N2 Missense_Mutation p.V160F 0.10 deleterious(0) probably_damaging(0.914) TCGA-4Z-AA84-01 1 160210143 160210143 G T DCAF8 Missense_Mutation p.P23T 0.07 deleterious(0.01) possibly_damaging(0.642) TCGA-4Z-AA84-01 1 162335224 162335224 G A RP11-565P22.6 Missense_Mutation p.E10K 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA84-01 1 168282123 168282123 G T TBX19 Missense_Mutation p.E410D 0.51 tolerated_low_confidence(0.21) benign(0.43) TCGA-4Z-AA84-01 1 169356364 169356364 G A BLZF1 Missense_Mutation p.E383K 0.58 deleterious(0.01) probably_damaging(0.978) TCGA-4Z-AA84-01 1 172501640 172501640 C T SUCO 5'Flank 0.36 TCGA-4Z-AA84-01 1 177250765 177250765 C T BRINP2 3'UTR 0.33 TCGA-4Z-AA84-01 1 178408586 178408586 C T RASAL2 Missense_Mutation p.S235L 0.09 deleterious(0) possibly_damaging(0.447) TCGA-4Z-AA84-01 1 179051498 179051498 G A TOR3A Missense_Mutation p.E79K 0.47 tolerated(0.16) benign(0.006) TCGA-4Z-AA84-01 1 179820468 179820468 G A TOR1AIP2 Missense_Mutation p.S22L 0.30 tolerated_low_confidence(0.06) possibly_damaging(0.821) TCGA-4Z-AA84-01 1 180049776 180049776 C T CEP350 Missense_Mutation p.S2035L 0.29 probably_damaging(0.999) TCGA-4Z-AA84-01 1 183599673 183599673 G T ARPC5 Missense_Mutation p.L109I 0.19 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA84-01 1 201777667 201777667 G T NAV1 Missense_Mutation p.D1323Y 0.25 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA84-01 1 204228723 204228723 C T PLEKHA6 Missense_Mutation p.E224K 0.37 tolerated(0.07) benign(0.434) TCGA-4Z-AA84-01 1 207640067 207640067 C T CR2 Silent p.F85F 0.67 TCGA-4Z-AA84-01 1 211192434 211192434 G A KCNH1 Silent p.F241F 0.19 TCGA-4Z-AA84-01 1 21191015 21191015 C T EIF4G3 Missense_Mutation p.R937H 0.44 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 1 212533999 212533999 G A PPP2R5A Missense_Mutation p.E450K 0.59 tolerated(0.06) possibly_damaging(0.715) TCGA-4Z-AA84-01 1 212799107 212799107 G A FAM71A Silent p.L296L 0.79 TCGA-4Z-AA84-01 1 22333505 22333505 A G CELA3A Missense_Mutation p.Y166C 0.10 tolerated(0.11) benign(0.101) TCGA-4Z-AA84-01 1 22412971 22412971 C T CDC42 Missense_Mutation p.P73L 0.08 deleterious(0.05) possibly_damaging(0.492) TCGA-4Z-AA84-01 1 224321802 224321802 C T FBXO28 Missense_Mutation p.S135L 0.42 tolerated(0.13) possibly_damaging(0.45) TCGA-4Z-AA84-01 1 228431121 228431121 C T OBSCN Missense_Mutation p.A1148V 0.16 probably_damaging(0.999) TCGA-4Z-AA84-01 1 236979841 236979841 C T MTR Silent p.L254L 0.69 TCGA-4Z-AA84-01 1 2411398 2411398 G A PLCH2 Missense_Mutation p.R139H 0.14 deleterious(0.03) probably_damaging(0.988) TCGA-4Z-AA84-01 1 247587654 247587654 C A NLRP3 Silent p.G303G 0.15 TCGA-4Z-AA84-01 1 24989249 24989249 A G SRRM1 Missense_Mutation p.S528G 0.09 benign(0.184) TCGA-4Z-AA84-01 1 26644616 26644616 G A UBXN11 5'UTR 0.19 TCGA-4Z-AA84-01 1 27092727 27092728 - AATA ARID1A Frame_Shift_Ins p.M918Kfs*19 0.51 TCGA-4Z-AA84-01 1 27683081 27683081 C T MAP3K6 Missense_Mutation p.R1175Q 0.59 deleterious(0.03) probably_damaging(0.996) TCGA-4Z-AA84-01 1 32110456 32110456 A G PEF1 Missense_Mutation p.Y4H 0.30 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA84-01 1 32542402 32542402 C G TMEM39B Silent p.T130T 0.24 TCGA-4Z-AA84-01 1 32622963 32622963 G T KPNA6 Missense_Mutation p.R83I 0.24 tolerated(0.1) benign(0.063) TCGA-4Z-AA84-01 1 32852411 32852411 G A BSDC1 Missense_Mutation p.A53V 0.37 tolerated(0.05) benign(0.316) TCGA-4Z-AA84-01 1 38155472 38155472 C T C1orf109 Silent p.L27L 0.44 TCGA-4Z-AA84-01 1 38281174 38281174 A C MTF1 Missense_Mutation p.C632W 0.20 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA84-01 1 39788328 39788328 C T MACF1 Nonsense_Mutation p.Q1365* 0.08 TCGA-4Z-AA84-01 1 44019601 44019601 C T PTPRF Missense_Mutation p.S123L 0.41 tolerated(0.14) benign(0.066) TCGA-4Z-AA84-01 1 44415322 44415322 C T IPO13 Silent p.F106F 0.10 TCGA-4Z-AA84-01 1 45965902 45965902 C T MMACHC 5'UTR 0.37 TCGA-4Z-AA84-01 1 46485285 46485285 G A MAST2 Silent p.E402E 0.10 TCGA-4Z-AA84-01 1 52442657 52442657 C T RAB3B Missense_Mutation p.D45N 0.47 tolerated(0.05) possibly_damaging(0.557) TCGA-4Z-AA84-01 1 52498579 52498579 C T KTI12 Silent p.L285L 0.14 TCGA-4Z-AA84-01 1 59248744 59248744 G A JUN 5'UTR 0.11 TCGA-4Z-AA84-01 1 6202515 6202515 T C CHD5 Missense_Mutation p.T732A 0.30 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA84-01 1 62228587 62228587 G A INADL Splice_Site p.X8_splice 0.64 TCGA-4Z-AA84-01 1 67396067 67396067 C T MIER1 Intron 0.50 TCGA-4Z-AA84-01 1 7907787 7907787 T C UTS2 3'Flank 0.11 TCGA-4Z-AA84-01 1 89237142 89237142 G A PKN2 Missense_Mutation p.E221K 0.16 deleterious(0) possibly_damaging(0.576) TCGA-4Z-AA84-01 1 93998534 93998534 G A FNBP1L Missense_Mutation p.G232E 0.11 tolerated(0.76) benign(0.022) TCGA-4Z-AA84-01 20 20350370 20350370 C T INSM1 Missense_Mutation p.H487Y 0.32 deleterious(0) benign(0.415) TCGA-4Z-AA84-01 20 2637292 2637292 C T NOP56 Intron 0.15 TCGA-4Z-AA84-01 20 30310083 30310083 C T BCL2L1 5'UTR 0.16 TCGA-4Z-AA84-01 20 30538146 30538146 C T PDRG1 Silent p.L44L 0.49 TCGA-4Z-AA84-01 20 30789833 30789833 G A PLAGL2 Missense_Mutation p.S50L 0.40 tolerated(0.37) benign(0.018) TCGA-4Z-AA84-01 20 31023909 31023909 G A ASXL1 Missense_Mutation p.E1132K 0.26 deleterious(0.04) benign(0.016) TCGA-4Z-AA84-01 20 31685555 31685555 C T BPIFB4 Missense_Mutation p.P511S 0.16 tolerated(0.18) benign(0.012) TCGA-4Z-AA84-01 20 3354709 3354710 - A C20orf194 Frame_Shift_Ins p.T200Yfs*5 0.25 TCGA-4Z-AA84-01 20 36150803 36150803 G A NNAT Missense_Mutation p.R39Q 0.28 deleterious_low_confidence(0.03) benign(0.029) TCGA-4Z-AA84-01 20 3758958 3758958 C T SPEF1 Silent p.Q204Q 0.35 TCGA-4Z-AA84-01 20 47887522 47887522 G A ZNFX1 Missense_Mutation p.S276F 0.13 deleterious(0) probably_damaging(0.926) TCGA-4Z-AA84-01 20 4850477 4850477 C T SLC23A2 Intron 0.36 TCGA-4Z-AA84-01 20 4880206 4880207 TC - SLC23A2 Frame_Shift_Del p.G159Vfs*25 0.33 TCGA-4Z-AA84-01 20 49508272 49508272 T C ADNP Silent p.P993P 0.37 TCGA-4Z-AA84-01 20 60881304 60881304 C T ADRM1 Silent p.L128L 0.23 TCGA-4Z-AA84-01 20 61941827 61941827 G T COL20A1 Missense_Mutation p.G453V 0.30 tolerated(0.05) possibly_damaging(0.457) TCGA-4Z-AA84-01 21 17150311 17150311 G A USP25 Silent p.E119E 0.14 TCGA-4Z-AA84-01 21 34649001 34649001 G A IL10RB Missense_Mutation p.E92K 0.31 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA84-01 21 45107738 45107738 G C RRP1B Missense_Mutation p.E495Q 0.25 tolerated(0.14) possibly_damaging(0.906) TCGA-4Z-AA84-01 21 45563204 45563204 C T C21orf33 Silent p.I213I 0.37 TCGA-4Z-AA84-01 21 45861743 45861743 C G TRPM2 3'UTR 0.21 TCGA-4Z-AA84-01 21 47783593 47783593 A G PCNT Missense_Mutation p.I785V 0.26 benign(0.002) TCGA-4Z-AA84-01 22 20307210 20307210 C T DGCR6L Missense_Mutation p.E75K 0.80 deleterious(0) possibly_damaging(0.644) TCGA-4Z-AA84-01 22 21800568 21800568 G A HIC2 Missense_Mutation p.E462K 0.53 tolerated(0.09) possibly_damaging(0.874) TCGA-4Z-AA84-01 22 29684723 29684723 G A EWSR1 Missense_Mutation p.D314N 0.21 deleterious(0.03) unknown(0) TCGA-4Z-AA84-01 22 29737621 29737621 G A AP1B1 Silent p.I555I 0.68 TCGA-4Z-AA84-01 22 31655170 31655170 G A LIMK2 Missense_Mutation p.E85K 0.66 deleterious(0.01) possibly_damaging(0.507) TCGA-4Z-AA84-01 22 31795597 31795597 C T DRG1 5'UTR 0.54 TCGA-4Z-AA84-01 22 35661174 35661174 G A HMGXB4 Missense_Mutation p.E265K 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.784) TCGA-4Z-AA84-01 22 38882115 38882115 G A DDX17 Missense_Mutation p.S674L 0.53 deleterious_low_confidence(0.03) benign(0.058) TCGA-4Z-AA84-01 22 41601346 41601346 G A L3MBTL2 5'UTR 0.12 TCGA-4Z-AA84-01 22 45731228 45731228 C T FAM118A Intron 0.60 TCGA-4Z-AA84-01 22 51018830 51018830 A G CHKB Silent p.S231S 0.67 TCGA-4Z-AA84-01 2 101893733 101893733 C T RNF149 Silent p.R390R 0.76 TCGA-4Z-AA84-01 2 113258869 113258869 C T TTL Missense_Mutation p.L186F 0.58 deleterious(0.01) possibly_damaging(0.85) TCGA-4Z-AA84-01 2 11593846 11593846 G T E2F6 Missense_Mutation p.S81Y 0.31 deleterious(0.01) possibly_damaging(0.707) TCGA-4Z-AA84-01 2 120567446 120567446 G A PTPN4 Missense_Mutation p.R6Q 0.06 deleterious(0.03) benign(0.357) TCGA-4Z-AA84-01 2 12858545 12858545 A G TRIB2 Missense_Mutation p.S38G 0.33 tolerated(0.5) benign(0.005) TCGA-4Z-AA84-01 2 142237984 142237984 G A LRP1B Silent p.D108D 0.58 TCGA-4Z-AA84-01 2 148672795 148672795 T C ACVR2A Silent p.G188G 0.70 TCGA-4Z-AA84-01 2 160636585 160636585 T C LY75-CD302 Missense_Mutation p.K1775E 0.16 deleterious(0.03) benign(0.158) TCGA-4Z-AA84-01 2 170366283 170366283 C T KLHL41 5'UTR 0.08 TCGA-4Z-AA84-01 2 176973754 176973754 C T HOXD11 Missense_Mutation p.R301W 0.37 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 2 178080766 178080766 G A HNRNPA3 Missense_Mutation p.E135K 0.31 deleterious(0.01) possibly_damaging(0.72) TCGA-4Z-AA84-01 2 17847757 17847757 C G SMC6 Missense_Mutation p.D1031H 0.07 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA84-01 2 179638746 179638746 A G TTN Silent p.S2383S 0.22 TCGA-4Z-AA84-01 2 179641728 179641728 G T TTN Silent p.V1621V 0.30 TCGA-4Z-AA84-01 2 182778577 182778577 C T SSFA2 Silent p.L498L 0.21 TCGA-4Z-AA84-01 2 190728532 190728532 A G PMS1 Silent p.E640E 0.35 TCGA-4Z-AA84-01 2 197654057 197654057 C T GTF3C3 Nonsense_Mutation p.W255* 0.09 TCGA-4Z-AA84-01 2 202900669 202900669 C T FZD7 Silent p.L433L 0.58 TCGA-4Z-AA84-01 2 215813432 215813432 G A ABCA12 Missense_Mutation p.S2331L 0.41 tolerated(0.08) possibly_damaging(0.79) TCGA-4Z-AA84-01 2 216248801 216248801 G A FN1 Silent p.V1612V 0.36 TCGA-4Z-AA84-01 2 220072409 220072409 G C ZFAND2B Missense_Mutation p.V64L 0.49 deleterious(0.03) probably_damaging(0.986) TCGA-4Z-AA84-01 2 24896321 24896321 C G NCOA1 Missense_Mutation p.L115V 0.18 deleterious(0) possibly_damaging(0.806) TCGA-4Z-AA84-01 2 26204205 26204205 C T KIF3C Silent p.V194V 0.28 TCGA-4Z-AA84-01 2 27587642 27587642 C T EIF2B4 Missense_Mutation p.E459K 0.30 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA84-01 2 27838103 27838103 C T ZNF512 Silent p.I400I 0.32 TCGA-4Z-AA84-01 2 28467646 28467646 G A BRE Splice_Site p.X284_splice 0.25 TCGA-4Z-AA84-01 2 31457657 31457657 A G EHD3 Missense_Mutation p.N57S 0.33 tolerated(0.4) benign(0.001) TCGA-4Z-AA84-01 2 32523364 32523364 G C YIPF4 Missense_Mutation p.R156T 0.43 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA84-01 2 32740564 32740577 AGTTGGCAATAGCC - BIRC6 Frame_Shift_Del p.V3693Yfs*10 0.34 TCGA-4Z-AA84-01 2 33359990 33359990 T C LTBP1 Silent p.H388H 0.29 TCGA-4Z-AA84-01 2 37494609 37494609 T C PRKD3 Silent p.Q616Q 0.40 TCGA-4Z-AA84-01 2 38604302 38604302 G A ATL2 Missense_Mutation p.S34L 0.14 deleterious_low_confidence(0.02) benign(0.004) TCGA-4Z-AA84-01 2 55529088 55529088 G A CCDC88A Missense_Mutation p.A1530V 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-4Z-AA84-01 2 73495884 73495884 T A FBXO41 Missense_Mutation p.H292L 0.31 tolerated(0.18) benign(0.043) TCGA-4Z-AA84-01 2 73495886 73495886 C A FBXO41 Silent p.V291V 0.31 TCGA-4Z-AA84-01 2 74691734 74691734 G A MOGS Silent p.F156F 0.31 TCGA-4Z-AA84-01 2 74734166 74734166 C T PCGF1 Intron 0.33 TCGA-4Z-AA84-01 2 86332830 86332830 C T POLR1A Missense_Mutation p.E24K 0.33 deleterious(0) probably_damaging(0.956) TCGA-4Z-AA84-01 2 88327491 88327491 T G KRCC1 Missense_Mutation p.K198Q 0.08 tolerated(0.13) benign(0.28) TCGA-4Z-AA84-01 2 96860705 96860705 G A STARD7 Silent p.F180F 0.53 TCGA-4Z-AA84-01 2 97427205 97427205 G A CNNM4 Missense_Mutation p.D157N 0.65 tolerated(0.27) benign(0.003) TCGA-4Z-AA84-01 3 108094622 108094622 A T HHLA2 Missense_Mutation p.R378S 0.33 tolerated_low_confidence(0.96) benign(0) TCGA-4Z-AA84-01 3 112709978 112709978 G A GTPBP8 Silent p.L44L 0.22 TCGA-4Z-AA84-01 3 11685122 11685122 C T VGLL4 5'UTR 0.44 TCGA-4Z-AA84-01 3 119434560 119434560 G A MAATS1 Missense_Mutation p.E218K 0.22 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 3 120976135 120976135 C G STXBP5L Missense_Mutation p.T596S 0.31 tolerated(1) benign(0.206) TCGA-4Z-AA84-01 3 121413576 121413576 T A GOLGB1 Missense_Mutation p.M1932L 0.40 probably_damaging(0.995) TCGA-4Z-AA84-01 3 122641217 122641217 C T SEMA5B Silent p.L504L 0.33 TCGA-4Z-AA84-01 3 12447507 12447507 C T PPARG Missense_Mutation p.S249L 0.39 deleterious(0) benign(0.372) TCGA-4Z-AA84-01 3 124952389 124952389 T C ZNF148 Missense_Mutation p.K394R 0.36 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA84-01 3 124953137 124953137 C T ZNF148 Missense_Mutation p.R235K 0.32 tolerated(0.24) benign(0.07) TCGA-4Z-AA84-01 3 127831784 127831784 G A RUVBL1 Missense_Mutation p.S103L 0.31 deleterious(0) probably_damaging(0.988) TCGA-4Z-AA84-01 3 132063860 132063860 C T ACPP Silent p.L246L 0.45 TCGA-4Z-AA84-01 3 132071660 132071660 G A ACPP Missense_Mutation p.E321K 0.20 deleterious(0.02) benign(0.33) TCGA-4Z-AA84-01 3 136573341 136573341 A G SLC35G2 Silent p.K13K 0.24 TCGA-4Z-AA84-01 3 138665091 138665091 C T FOXL2 Silent p.A158A 0.35 TCGA-4Z-AA84-01 3 148714612 148714612 C A GYG1 Silent p.S134S 0.27 TCGA-4Z-AA84-01 3 159707039 159707039 C T IL12A Intron 0.62 TCGA-4Z-AA84-01 3 159710865 159710865 G A IL12A Missense_Mutation p.D111N 0.27 tolerated(0.49) benign(0.423) TCGA-4Z-AA84-01 3 171323192 171323192 T C PLD1 Missense_Mutation p.Y966C 0.40 tolerated(0.18) benign(0.003) TCGA-4Z-AA84-01 3 178941935 178941935 C G PIK3CA Missense_Mutation p.L752V 0.25 tolerated(0.67) benign(0.001) TCGA-4Z-AA84-01 3 183903936 183903936 G A ABCF3 5'UTR 0.26 TCGA-4Z-AA84-01 3 184072067 184072067 C T CLCN2 Missense_Mutation p.V515M 0.38 deleterious(0.02) probably_damaging(0.964) TCGA-4Z-AA84-01 3 184086072 184086072 T C POLR2H Missense_Mutation p.L148P 0.24 deleterious(0) probably_damaging(0.919) TCGA-4Z-AA84-01 3 191078907 191078907 A G CCDC50 Missense_Mutation p.I97V 0.40 deleterious(0.03) possibly_damaging(0.862) TCGA-4Z-AA84-01 3 19491662 19491662 G A KCNH8 Nonsense_Mutation p.W480* 0.29 TCGA-4Z-AA84-01 3 24206576 24206576 G A THRB Intron 0.14 TCGA-4Z-AA84-01 3 38888554 38888554 T C SCN11A Silent p.V1669V 0.36 TCGA-4Z-AA84-01 3 38888638 38888638 G C SCN11A Missense_Mutation p.I1641M 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-4Z-AA84-01 3 40547824 40547824 G T ZNF620 5'UTR 0.20 TCGA-4Z-AA84-01 3 41266918 41266918 G T CTNNB1 Missense_Mutation p.A197S 0.19 tolerated(0.12) benign(0.129) TCGA-4Z-AA84-01 3 47162815 47162815 T C SETD2 Missense_Mutation p.E1104G 0.15 deleterious_low_confidence(0.01) benign(0.424) TCGA-4Z-AA84-01 3 48576047 48576047 C T PFKFB4 Silent p.V172V 0.33 TCGA-4Z-AA84-01 3 48686553 48686553 C A CELSR3 Splice_Site p.X2189_splice 0.20 TCGA-4Z-AA84-01 3 48691105 48691105 G A CELSR3 Nonsense_Mutation p.Q1799* 0.10 TCGA-4Z-AA84-01 3 49293807 49293807 A G CCDC36 Missense_Mutation p.K293E 0.50 tolerated(1) benign(0.001) TCGA-4Z-AA84-01 3 49338025 49338025 C T USP4 Missense_Mutation p.E463K 0.08 tolerated(0.19) benign(0.007) TCGA-4Z-AA84-01 3 52730567 52730573 GGATTCC - GLT8D1 Frame_Shift_Del p.E145* 0.29 TCGA-4Z-AA84-01 3 56114896 56114896 C T ERC2 Missense_Mutation p.M530I 0.16 deleterious(0.02) benign(0.01) TCGA-4Z-AA84-01 3 58792122 58792122 G A C3orf67 Missense_Mutation p.R495W 0.12 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA84-01 3 59737984 59737984 C T FHIT Missense_Mutation p.E138K 0.19 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 3 71050152 71050152 T A FOXP1 Missense_Mutation p.M347L 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-4Z-AA84-01 3 85984947 85984947 C A CADM2 Missense_Mutation p.T237N 0.11 tolerated(0.47) benign(0.001) TCGA-4Z-AA84-01 3 9475997 9475997 C T SETD5 Intron 0.17 TCGA-4Z-AA84-01 4 100477342 100477342 C T TRMT10A Silent p.K152K 0.18 TCGA-4Z-AA84-01 4 102751143 102751143 G A BANK1 Silent p.L83L 0.47 TCGA-4Z-AA84-01 4 110460785 110460785 C T SEC24B Missense_Mutation p.S1254F 0.17 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 4 119216117 119216117 G A PRSS12 Silent p.L672L 0.41 TCGA-4Z-AA84-01 4 123342519 123342519 G A ADAD1 Missense_Mutation p.E531K 0.28 tolerated(0.72) benign(0.005) TCGA-4Z-AA84-01 4 123533893 123533893 G A IL21 Missense_Mutation p.S154F 0.31 tolerated_low_confidence(0.09) benign(0.001) TCGA-4Z-AA84-01 4 126238753 126238753 T C FAT4 Missense_Mutation p.V396A 0.35 probably_damaging(0.972) TCGA-4Z-AA84-01 4 128886262 128886262 T C MFSD8 Silent p.E9E 0.15 TCGA-4Z-AA84-01 4 140278603 140278603 A G NAA15 Missense_Mutation p.Y384C 0.21 deleterious(0) probably_damaging(0.928) TCGA-4Z-AA84-01 4 151223814 151223841 CCAATACCACAGCAAAAGAGTTGCATCA - LRBA Frame_Shift_Del p.D2663Mfs*22 0.09 TCGA-4Z-AA84-01 4 154669824 154669824 C T RNF175 Nonsense_Mutation p.W73* 0.40 TCGA-4Z-AA84-01 4 159091630 159091630 C T FAM198B Missense_Mutation p.E300K 0.37 tolerated(0.16) possibly_damaging(0.486) TCGA-4Z-AA84-01 4 170190326 170190326 G C SH3RF1 Missense_Mutation p.P13R 0.12 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 4 172735740 172735740 G A GALNTL6 Silent p.R3R 0.37 TCGA-4Z-AA84-01 4 184240682 184240682 G A CLDN22 3'UTR 0.36 TCGA-4Z-AA84-01 4 186548048 186548048 G A SORBS2 Missense_Mutation p.S387L 0.19 tolerated(0.32) benign(0.167) TCGA-4Z-AA84-01 4 186570784 186570784 G A SORBS2 Nonsense_Mutation p.Q236* 0.41 TCGA-4Z-AA84-01 4 23816014 23816014 G A PPARGC1A Silent p.L364L 0.17 TCGA-4Z-AA84-01 4 30732462 30732462 T C PCDH7 Intron 0.35 TCGA-4Z-AA84-01 4 30732468 30732468 G A PCDH7 Intron 0.38 TCGA-4Z-AA84-01 4 41992739 41992739 G A SLC30A9 Missense_Mutation p.R24Q 0.46 tolerated_low_confidence(0.75) benign(0.022) TCGA-4Z-AA84-01 4 57845119 57845119 C T POLR2B 5'UTR 0.40 TCGA-4Z-AA84-01 4 68928820 68928820 C T TMPRSS11F Intron 0.16 TCGA-4Z-AA84-01 4 71458090 71458090 G C AMBN Missense_Mutation p.K5N 0.24 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-4Z-AA84-01 4 88584465 88584465 G T DMP1 Missense_Mutation p.G512V 0.29 deleterious(0) unknown(0) TCGA-4Z-AA84-01 4 90756716 90756716 C T SNCA Missense_Mutation p.E35K 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-4Z-AA84-01 5 110427901 110427901 G A WDR36 5'UTR 0.31 TCGA-4Z-AA84-01 5 110461420 110461420 A C WDR36 Missense_Mutation p.K878T 0.21 tolerated(0.06) benign(0.219) TCGA-4Z-AA84-01 5 113740235 113740235 C T KCNN2 Missense_Mutation p.P228L 0.12 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA84-01 5 114961372 114961372 C T TMED7-TICAM2 Missense_Mutation p.E40K 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-4Z-AA84-01 5 125805371 125805371 C T GRAMD3 Missense_Mutation p.S84L 0.13 tolerated(0.17) benign(0.064) TCGA-4Z-AA84-01 5 131322536 131322536 T C ACSL6 Silent p.Q281Q 0.50 TCGA-4Z-AA84-01 5 134143530 134143530 C G DDX46 Missense_Mutation p.L683V 0.34 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA84-01 5 134332048 134332048 G T CATSPER3 Missense_Mutation p.G113V 0.21 tolerated(0.06) probably_damaging(0.961) TCGA-4Z-AA84-01 5 135283058 135283058 C T LECT2 Missense_Mutation p.E140K 0.38 deleterious(0) possibly_damaging(0.755) TCGA-4Z-AA84-01 5 138723604 138723604 G A MZB1 Silent p.S140S 0.28 TCGA-4Z-AA84-01 5 139494615 139494615 G A PURA Silent p.E283E 0.23 TCGA-4Z-AA84-01 5 139889288 139889288 G A ANKHD1 Missense_Mutation p.D1278N 0.28 possibly_damaging(0.822) TCGA-4Z-AA84-01 5 140229489 140229489 C T PCDHA9 Missense_Mutation p.P470L 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-4Z-AA84-01 5 141019656 141019656 G A RELL2 Missense_Mutation p.E225K 0.11 deleterious_low_confidence(0) benign(0.171) TCGA-4Z-AA84-01 5 141049273 141049273 C T ARAP3 Intron 0.49 TCGA-4Z-AA84-01 5 141694592 141694592 G A SPRY4 Missense_Mutation p.H51Y 0.25 tolerated(1) benign(0.002) TCGA-4Z-AA84-01 5 147211170 147211170 G A SPINK1 5'UTR 0.42 TCGA-4Z-AA84-01 5 149509431 149509431 C T PDGFRB Missense_Mutation p.E490K 0.35 tolerated(0.55) benign(0.002) TCGA-4Z-AA84-01 5 150838432 150838432 G A SLC36A1 Missense_Mutation p.E27K 0.11 tolerated(0.26) benign(0.027) TCGA-4Z-AA84-01 5 154200897 154200897 G T FAXDC2 Silent p.I256I 0.13 TCGA-4Z-AA84-01 5 156945840 156945840 A T ADAM19 Missense_Mutation p.D219E 0.53 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA84-01 5 16701909 16701910 - A MYO10 Frame_Shift_Ins p.L865Ffs*9 0.23 TCGA-4Z-AA84-01 5 167551961 167551961 G A TENM2 Silent p.Q705Q 0.80 TCGA-4Z-AA84-01 5 167689372 167689372 G A TENM2 Missense_Mutation p.D2628N 0.18 deleterious(0) possibly_damaging(0.895) TCGA-4Z-AA84-01 5 169661980 169661980 G C C5orf58 Splice_Site p.X22_splice 0.33 TCGA-4Z-AA84-01 5 35860951 35860951 C A IL7R Intron 0.14 TCGA-4Z-AA84-01 5 40716219 40716219 A G TTC33 3'UTR 0.45 TCGA-4Z-AA84-01 5 65054536 65054536 G A NLN Missense_Mutation p.E62K 0.07 tolerated(0.33) benign(0.003) TCGA-4Z-AA84-01 5 6633867 6633867 G A SRD5A1 Missense_Mutation p.E60K 0.12 deleterious(0) possibly_damaging(0.831) TCGA-4Z-AA84-01 5 70840972 70840972 G T BDP1 Missense_Mutation p.G2224C 0.46 deleterious(0) possibly_damaging(0.891) TCGA-4Z-AA84-01 5 72858588 72858588 G T ANKRA2 Nonsense_Mutation p.S40* 0.32 TCGA-4Z-AA84-01 5 73048784 73048784 G A ARHGEF28 Missense_Mutation p.G78S 0.28 tolerated(0.09) possibly_damaging(0.625) TCGA-4Z-AA84-01 5 77423952 77423952 G A AP3B1 Missense_Mutation p.H624Y 0.12 deleterious(0) possibly_damaging(0.791) TCGA-4Z-AA84-01 5 7835579 7835579 A G C5orf49 Silent p.F60F 0.36 TCGA-4Z-AA84-01 5 80476094 80476094 C A RASGRF2 Missense_Mutation p.H929Q 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-4Z-AA84-01 5 94991690 94991690 C T RFESD Intron 0.22 TCGA-4Z-AA84-01 5 96132899 96132899 C T ERAP1 Silent p.K259K 0.38 TCGA-4Z-AA84-01 6 129513909 129513909 C T LAMA2 Nonsense_Mutation p.Q565* 0.12 TCGA-4Z-AA84-01 6 134210812 134210812 C T TCF21 Nonsense_Mutation p.R93* 0.12 TCGA-4Z-AA84-01 6 135318736 135318736 C T HBS1L Missense_Mutation p.E200K 0.24 tolerated(0.4) benign(0.24) TCGA-4Z-AA84-01 6 137243662 137243662 C T SLC35D3 Silent p.L32L 0.23 TCGA-4Z-AA84-01 6 144809937 144809937 G T UTRN Missense_Mutation p.R1367S 0.21 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA84-01 6 152589235 152589235 C G SYNE1 Missense_Mutation p.E6257D 0.41 probably_damaging(0.937) TCGA-4Z-AA84-01 6 154542425 154542425 A G IPCEF1 Missense_Mutation p.Y120H 0.30 deleterious(0) possibly_damaging(0.519) TCGA-4Z-AA84-01 6 158834168 158834168 G A TULP4 Silent p.V108V 0.24 TCGA-4Z-AA84-01 6 165746374 165746374 T C PDE10A 3'UTR 0.29 TCGA-4Z-AA84-01 6 25972267 25972267 C T TRIM38 Silent p.L226L 0.17 TCGA-4Z-AA84-01 6 26087676 26087676 C T HFE Missense_Mutation p.P3L 0.21 tolerated_low_confidence(0.08) benign(0.212) TCGA-4Z-AA84-01 6 2623840 2623840 G A C6orf195 Missense_Mutation p.P73S 0.36 tolerated_low_confidence(0.69) possibly_damaging(0.803) TCGA-4Z-AA84-01 6 26452306 26452306 C T BTN3A3 Silent p.F474F 0.35 TCGA-4Z-AA84-01 6 26502082 26502082 G A BTN1A1 Missense_Mutation p.R115K 0.09 tolerated(0.36) benign(0.008) TCGA-4Z-AA84-01 6 28541324 28541324 T C SCAND3 Missense_Mutation p.Y781C 0.31 tolerated_low_confidence(0.18) benign(0.002) TCGA-4Z-AA84-01 6 29274845 29274845 C T OR14J1 Missense_Mutation p.P127S 0.14 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 6 31602666 31602666 C T PRRC2A Missense_Mutation p.S1691L 0.26 unknown(0) TCGA-4Z-AA84-01 6 31785456 31785456 T C HSPA1A Silent p.D641D 0.19 TCGA-4Z-AA84-01 6 31836983 31836983 G A SLC44A4 Silent p.I394I 0.23 TCGA-4Z-AA84-01 6 31939404 31939404 C T DXO Missense_Mutation p.E17K 0.21 tolerated(0.68) benign(0.002) TCGA-4Z-AA84-01 6 32086784 32086784 G A ATF6B Silent p.L367L 0.38 TCGA-4Z-AA84-01 6 32157485 32157485 C T PBX2 Missense_Mutation p.E70K 0.29 deleterious(0.04) possibly_damaging(0.595) TCGA-4Z-AA84-01 6 32169083 32169083 C T NOTCH4 Missense_Mutation p.R1317Q 0.25 tolerated(0.09) benign(0.44) TCGA-4Z-AA84-01 6 33238055 33238055 A G VPS52 Silent p.G32G 0.25 TCGA-4Z-AA84-01 6 33254944 33254944 C T WDR46 Silent p.L313L 0.19 TCGA-4Z-AA84-01 6 36270004 36270004 C T PNPLA1 Missense_Mutation p.P381L 0.09 tolerated_low_confidence(0.11) benign(0.006) TCGA-4Z-AA84-01 6 43141795 43141795 G A SRF Missense_Mutation p.E242K 0.25 deleterious(0.02) benign(0.001) TCGA-4Z-AA84-01 6 43399811 43399811 G A ABCC10 Intron 0.43 TCGA-4Z-AA84-01 6 43496616 43496616 C T XPO5 Missense_Mutation p.E909K 0.26 tolerated(0.06) benign(0.231) TCGA-4Z-AA84-01 6 50803829 50803829 G C TFAP2B Silent p.L219L 0.33 TCGA-4Z-AA84-01 6 52380840 52380840 G T TRAM2 Missense_Mutation p.F125L 0.27 tolerated(1) benign(0) TCGA-4Z-AA84-01 6 53370196 53370196 C A GCLC Silent p.L463L 0.45 TCGA-4Z-AA84-01 6 56469916 56469916 G A DST Intron 0.19 TCGA-4Z-AA84-01 6 56963872 56963872 G C ZNF451 Missense_Mutation p.R40P 0.09 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA84-01 6 73904352 73904352 A G KCNQ5 Missense_Mutation p.N691D 0.17 tolerated(0.52) benign(0.024) TCGA-4Z-AA84-01 6 75829125 75829125 T G COL12A1 Missense_Mutation p.K2384T 0.07 probably_damaging(0.999) TCGA-4Z-AA84-01 6 75953506 75953506 C T COX7A2 Nonsense_Mutation p.W14* 0.22 TCGA-4Z-AA84-01 6 80228565 80228565 G A LCA5 Missense_Mutation p.A16V 0.44 deleterious(0.04) benign(0.154) TCGA-4Z-AA84-01 6 83877885 83877885 G A DOPEY1 Silent p.%3D 0.12 TCGA-4Z-AA84-01 7 100064708 100064708 C T TSC22D4 Silent p.R354R 0.54 TCGA-4Z-AA84-01 7 100479013 100479013 A G SRRT Missense_Mutation p.Q77R 0.36 tolerated(0.19) possibly_damaging(0.777) TCGA-4Z-AA84-01 7 100679488 100679488 T C MUC17 Silent p.P1597P 0.40 TCGA-4Z-AA84-01 7 101877354 101877354 C T CUX1 Silent p.T1163T 0.10 TCGA-4Z-AA84-01 7 102100147 102100147 C G ALKBH4 Silent p.L75L 0.10 TCGA-4Z-AA84-01 7 104742503 104742503 T G KMT2E Silent p.V686V 0.38 TCGA-4Z-AA84-01 7 104742539 104742539 T G KMT2E Silent p.L698L 0.32 TCGA-4Z-AA84-01 7 106826323 106826323 C T HBP1 Missense_Mutation p.S159L 0.32 tolerated(0.11) benign(0.049) TCGA-4Z-AA84-01 7 107800883 107800883 A G NRCAM Missense_Mutation p.M1174T 0.41 deleterious(0) probably_damaging(0.953) TCGA-4Z-AA84-01 7 115624334 115624334 A G TFEC Silent p.D54D 0.26 TCGA-4Z-AA84-01 7 116436059 116436059 G T MET Missense_Mutation p.V1370L 0.37 tolerated(1) benign(0.027) TCGA-4Z-AA84-01 7 11676326 11676326 T A THSD7A Missense_Mutation p.E151D 0.11 tolerated(0.1) benign(0.005) TCGA-4Z-AA84-01 7 116849967 116849967 C A ST7 Missense_Mutation p.L461I 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-4Z-AA84-01 7 127224309 127224309 G C GCC1 Missense_Mutation p.R310G 0.31 deleterious(0.02) benign(0.091) TCGA-4Z-AA84-01 7 1273287 1273287 G A UNCX Missense_Mutation p.E136K 0.39 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA84-01 7 128658131 128658131 C T TNPO3 Missense_Mutation p.M67I 0.24 deleterious(0.01) benign(0.348) TCGA-4Z-AA84-01 7 137613027 137613027 G A CREB3L2 Missense_Mutation p.S63L 0.23 tolerated(0.67) probably_damaging(0.977) TCGA-4Z-AA84-01 7 138223425 138223425 G A TRIM24 Missense_Mutation p.M340I 0.29 tolerated(0.29) benign(0.009) TCGA-4Z-AA84-01 7 138391434 138391434 C G ATP6V0A4 Missense_Mutation p.G820R 0.32 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 7 148851342 148851342 G A ZNF398 Silent p.Q110Q 0.53 TCGA-4Z-AA84-01 7 149152303 149152303 G T ZNF777 Silent p.R271R 0.10 TCGA-4Z-AA84-01 7 149481978 149481978 C G SSPO Intron 0.09 TCGA-4Z-AA84-01 7 150390175 150390175 C T GIMAP2 Silent p.I267I 0.53 TCGA-4Z-AA84-01 7 150776970 150776970 G C FASTK Missense_Mutation p.S41C 0.42 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-4Z-AA84-01 7 152345860 152345860 T C XRCC2 Missense_Mutation p.H237R 0.48 tolerated(0.2) benign(0.023) TCGA-4Z-AA84-01 7 20180731 20180731 A G MACC1 Silent p.Y799Y 0.30 TCGA-4Z-AA84-01 7 20198509 20198509 G A MACC1 Missense_Mutation p.P492L 0.34 tolerated(0.36) benign(0.004) TCGA-4Z-AA84-01 7 21469343 21469343 C T SP4 Missense_Mutation p.S187L 0.30 deleterious(0.01) benign(0.007) TCGA-4Z-AA84-01 7 2275054 2275054 T A FTSJ2 Silent p.A148A 0.18 TCGA-4Z-AA84-01 7 26240339 26240339 C T HNRNPA2B1 5'UTR 0.39 TCGA-4Z-AA84-01 7 32338285 32338285 G A PDE1C Silent p.I21I 0.41 TCGA-4Z-AA84-01 7 40133797 40133797 C T CDK13 Nonsense_Mutation p.R1253* 0.28 TCGA-4Z-AA84-01 7 45142071 45142071 G A TBRG4 Missense_Mutation p.S399L 0.43 tolerated(0.32) benign(0.003) TCGA-4Z-AA84-01 7 48083075 48083075 G A C7orf57 Intron 0.27 TCGA-4Z-AA84-01 7 55248935 55248935 C A EGFR Intron 0.29 TCGA-4Z-AA84-01 7 6634089 6634089 G A C7orf26 Silent p.V146V 0.24 TCGA-4Z-AA84-01 7 74131303 74131303 T A GTF2I Intron 0.11 TCGA-4Z-AA84-01 7 75028248 75028248 G A TRIM73 Missense_Mutation p.E11K 0.21 deleterious(0.03) benign(0.371) TCGA-4Z-AA84-01 7 7625397 7625397 A G MIOS Silent p.A593A 0.31 TCGA-4Z-AA84-01 7 99754136 99754136 C T C7orf43 Silent p.V371V 0.32 TCGA-4Z-AA84-01 7 99768017 99768017 G A GPC2 Missense_Mutation p.P526S 0.24 tolerated(0.11) possibly_damaging(0.671) TCGA-4Z-AA84-01 8 100904183 100904183 T A COX6C Missense_Mutation p.M23L 0.42 tolerated(0.57) benign(0.002) TCGA-4Z-AA84-01 8 101174641 101174641 G A SPAG1 Missense_Mutation p.V45M 0.39 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA84-01 8 101586178 101586178 T C SNX31 Missense_Mutation p.Y413C 0.51 tolerated(0.13) benign(0.006) TCGA-4Z-AA84-01 8 11407730 11407731 - GGCCG BLK Frame_Shift_Ins p.S147Pfs*20 0.19 TCGA-4Z-AA84-01 8 124238837 124238837 G A C8orf76 Missense_Mutation p.S284L 0.58 deleterious(0) possibly_damaging(0.867) TCGA-4Z-AA84-01 8 125989277 125989277 G A ZNF572 Missense_Mutation p.S256N 0.35 tolerated(0.31) possibly_damaging(0.664) TCGA-4Z-AA84-01 8 131916131 131916131 C G ADCY8 Missense_Mutation p.D600H 0.12 tolerated(0.05) possibly_damaging(0.846) TCGA-4Z-AA84-01 8 142367850 142367850 C G GPR20 Silent p.A58A 0.07 TCGA-4Z-AA84-01 8 144810877 144810877 C T FAM83H Missense_Mutation p.E252K 0.38 deleterious(0) probably_damaging(0.984) TCGA-4Z-AA84-01 8 145059316 145059316 G A PARP10 Missense_Mutation p.T285M 0.34 tolerated(0.11) benign(0.217) TCGA-4Z-AA84-01 8 145151968 145151968 G C CYC1 Missense_Mutation p.K268N 0.10 deleterious(0) probably_damaging(1) TCGA-4Z-AA84-01 8 145621669 145621669 C T CPSF1 Missense_Mutation p.R958Q 0.50 deleterious(0.01) possibly_damaging(0.781) TCGA-4Z-AA84-01 8 29207676 29207676 C T DUSP4 Silent p.P40P 0.31 TCGA-4Z-AA84-01 8 3087634 3087634 C T CSMD1 Missense_Mutation p.G1425R 0.34 probably_damaging(0.993) TCGA-4Z-AA84-01 8 32599593 32599593 A T NRG1 Intron 0.18 TCGA-4Z-AA84-01 8 41583408 41583408 C A ANK1 Silent p.A194A 0.19 TCGA-4Z-AA84-01 8 42611400 42611422 GACAAAGATCATGGTGAACAGCA - CHRNA6 Frame_Shift_Del p.L307Hfs*54 0.26 TCGA-4Z-AA84-01 8 56882273 56882273 T C LYN Intron 0.43 TCGA-4Z-AA84-01 8 59358548 59358548 G T UBXN2B Missense_Mutation p.D252Y 0.37 deleterious(0) probably_damaging(0.975) TCGA-4Z-AA84-01 8 66582252 66582252 C T MTFR1 Missense_Mutation p.S22L 0.13 tolerated(0.25) benign(0.26) TCGA-4Z-AA84-01 8 67577417 67577417 G T VCPIP1 Missense_Mutation p.P593T 0.44 tolerated(0.16) possibly_damaging(0.496) TCGA-4Z-AA84-01 8 68999961 68999961 C T PREX2 Missense_Mutation p.T677I 0.48 tolerated(1) probably_damaging(0.998) TCGA-4Z-AA84-01 8 74005141 74005141 T G SBSPON Missense_Mutation p.Q54H 0.29 deleterious(0) possibly_damaging(0.739) TCGA-4Z-AA84-01 8 87568347 87568347 G A CPNE3 Silent p.L424L 0.41 TCGA-4Z-AA84-01 8 91657402 91657402 C T TMEM64 Silent p.L244L 0.43 TCGA-4Z-AA84-01 8 93017451 93017451 G T RUNX1T1 Silent p.L222L 0.17 TCGA-4Z-AA84-01 8 95178028 95178036 TATCTTGCT - CDH17 In_Frame_Del p.K412_D414del 0.37 TCGA-4Z-AA84-01 8 95189857 95189857 G C CDH17 Missense_Mutation p.N81K 0.06 tolerated(0.2) benign(0.017) TCGA-4Z-AA84-01 8 9577956 9577956 C G TNKS Missense_Mutation p.R608G 0.12 deleterious(0.01) possibly_damaging(0.546) TCGA-4Z-AA84-01 9 100234693 100234693 C G TDRD7 Nonsense_Mutation p.Y620* 0.37 TCGA-4Z-AA84-01 9 110249982 110249982 C T KLF4 Silent p.L231L 0.67 TCGA-4Z-AA84-01 9 112930771 112930771 C T PALM2-AKAP2 Silent p.N1102N 0.09 TCGA-4Z-AA84-01 9 113265434 113265434 A G SVEP1 Missense_Mutation p.M456T 0.33 benign(0.004) TCGA-4Z-AA84-01 9 114151937 114151937 G A KIAA0368 Nonsense_Mutation p.Q1294* 0.35 TCGA-4Z-AA84-01 9 114305017 114305017 A G ZNF483 Missense_Mutation p.H601R 0.27 deleterious(0) benign(0.229) TCGA-4Z-AA84-01 9 115805519 115805519 G C ZFP37 Missense_Mutation p.P460R 0.11 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA84-01 9 127790673 127790673 A T SCAI Nonsense_Mutation p.Y160* 0.28 TCGA-4Z-AA84-01 9 129643161 129643161 G A ZBTB34 Missense_Mutation p.E491K 0.16 deleterious_low_confidence(0.02) benign(0.076) TCGA-4Z-AA84-01 9 130425614 130425614 C A STXBP1 Missense_Mutation p.P187Q 0.12 deleterious(0) probably_damaging(0.967) TCGA-4Z-AA84-01 9 131038983 131038983 T C SWI5 Silent p.S125S 0.42 TCGA-4Z-AA84-01 9 134350946 134350961 CTTCCCAAGCGCCGCC - PRRC2B Frame_Shift_Del p.L1144Gfs*21 0.22 TCGA-4Z-AA84-01 9 136202906 136202906 A C SURF6 Missense_Mutation p.S22A 0.36 tolerated(0.29) benign(0.003) TCGA-4Z-AA84-01 9 136282824 136282824 C T REXO4 Silent p.K47K 0.25 TCGA-4Z-AA84-01 9 136282872 136282873 - T REXO4 Frame_Shift_Ins p.N31Kfs*126 0.27 TCGA-4Z-AA84-01 9 137809665 137809665 A C FCN1 Missense_Mutation p.L18W 0.42 deleterious(0.01) benign(0.014) TCGA-4Z-AA84-01 9 139090785 139090785 G A LHX3 Missense_Mutation p.S197F 0.35 deleterious(0) possibly_damaging(0.866) TCGA-4Z-AA84-01 9 139699038 139699038 G A CCDC183 Missense_Mutation p.D251N 0.32 deleterious(0) probably_damaging(0.982) TCGA-4Z-AA84-01 9 139726191 139726191 C T RABL6 Silent p.L159L 0.18 TCGA-4Z-AA84-01 9 140289825 140289825 G A EXD3 5'UTR 0.23 TCGA-4Z-AA84-01 9 140469295 140469295 T C DPH7 Missense_Mutation p.K126E 0.46 tolerated(0.33) benign(0.011) TCGA-4Z-AA84-01 9 18928966 18928966 C T FAM154A Missense_Mutation p.R170K 0.54 tolerated(0.13) probably_damaging(0.999) TCGA-4Z-AA84-01 9 19316750 19316750 T G DENND4C Missense_Mutation p.L574V 0.64 deleterious(0) probably_damaging(0.971) TCGA-4Z-AA84-01 9 21974757 21974757 G C CDKN2A Missense_Mutation p.R24G 0.54 tolerated(0.21) possibly_damaging(0.508) TCGA-4Z-AA84-01 9 34372504 34372504 G A KIAA1161 Silent p.F112F 0.31 TCGA-4Z-AA84-01 9 34372677 34372677 G A KIAA1161 Missense_Mutation p.R55C 0.45 deleterious(0) possibly_damaging(0.634) TCGA-4Z-AA84-01 9 35108216 35108216 G A FAM214B Missense_Mutation p.S19L 0.67 tolerated_low_confidence(0.06) probably_damaging(0.977) TCGA-4Z-AA84-01 9 35561480 35561480 G A RUSC2 3'UTR 0.67 TCGA-4Z-AA84-01 9 35792663 35792663 C T NPR2 Silent p.D86D 0.30 TCGA-4Z-AA84-01 9 6007285 6007285 C A KIAA2026 Missense_Mutation p.C168F 0.61 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA84-01 9 72962043 72962043 C T SMC5 Missense_Mutation p.S877L 0.21 deleterious(0.04) benign(0.082) TCGA-4Z-AA84-01 9 74865786 74865786 C A GDA 3'Flank 0.38 TCGA-4Z-AA84-01 9 86452071 86452071 G A KIF27 Missense_Mutation p.H1351Y 0.36 tolerated_low_confidence(0.1) benign(0.002) TCGA-4Z-AA84-01 9 96305554 96305554 C T FAM120A Nonsense_Mutation p.Q654* 0.22 TCGA-4Z-AA84-01 9 99581012 99581012 G A ZNF782 Silent p.F431F 0.45 TCGA-4Z-AA84-01 X 100646014 100646014 G A RPL36A-HNRNPH2 Missense_Mutation p.D6N 0.61 tolerated_low_confidence(0.2) benign(0.024) TCGA-4Z-AA84-01 X 104728345 104728345 G T IL1RAPL2 Missense_Mutation p.M246I 0.66 tolerated(0.41) benign(0.026) TCGA-4Z-AA84-01 X 107978993 107978993 G A IRS4 Silent p.L194L 0.56 TCGA-4Z-AA84-01 X 110654178 110654178 G A DCX Missense_Mutation p.H9Y 0.66 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA84-01 X 112033959 112033959 G C AMOT Missense_Mutation p.L660V 0.26 unknown(0) TCGA-4Z-AA84-01 X 123202445 123202445 G A STAG2 Missense_Mutation p.R766K 0.63 tolerated(0.67) benign(0.006) TCGA-4Z-AA84-01 X 128657245 128657245 G A SMARCA1 Nonsense_Mutation p.Q35* 0.64 TCGA-4Z-AA84-01 X 134166413 134166413 G A FAM127A 5'UTR 0.69 TCGA-4Z-AA84-01 X 135494524 135494524 T C GPR112 Silent p.S3012S 0.58 TCGA-4Z-AA84-01 X 148564458 148564458 G A IDS Missense_Mutation p.S280F 0.60 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA84-01 X 44922763 44922763 C T KDM6A Nonsense_Mutation p.Q542* 0.54 TCGA-4Z-AA84-01 X 48755064 48755064 C T TIMM17B 5'UTR 0.36 TCGA-4Z-AA84-01 X 49071899 49071899 G A CACNA1F Missense_Mutation p.A1125V 0.55 deleterious(0) possibly_damaging(0.632) TCGA-4Z-AA84-01 X 62885822 62885822 G A ARHGEF9 Missense_Mutation p.R334C 0.70 deleterious(0.01) probably_damaging(0.931) TCGA-4Z-AA84-01 X 64753527 64753527 C G LAS1L Missense_Mutation p.D109H 0.28 tolerated(0.53) possibly_damaging(0.627) TCGA-4Z-AA84-01 X 83352851 83352851 A G RPS6KA6 Silent p.L594L 0.68 TCGA-4Z-AA84-01 Y 2722723 2722723 G C RPS4Y1 Missense_Mutation p.R148P 0.29 deleterious(0.03) benign(0.058) TCGA-4Z-AA86-01 10 13782564 13782564 T C FRMD4A Missense_Mutation p.I188V 0.10 deleterious(0.02) benign(0.103) TCGA-4Z-AA86-01 10 15120440 15120440 C G ACBD7 3'UTR 0.07 TCGA-4Z-AA86-01 10 15729952 15729952 G A ITGA8 Silent p.H143H 0.21 TCGA-4Z-AA86-01 10 51465271 51465271 G T AGAP7 Silent p.G395G 0.12 TCGA-4Z-AA86-01 10 54031249 54031249 G A PRKG1 Missense_Mutation p.R438K 0.17 tolerated(0.94) benign(0.035) TCGA-4Z-AA86-01 10 5773097 5773097 G C FAM208B Missense_Mutation p.D379H 0.07 tolerated(0.07) benign(0.023) TCGA-4Z-AA86-01 10 79628952 79628952 G C DLG5 Missense_Mutation p.S103C 0.12 deleterious(0) possibly_damaging(0.49) TCGA-4Z-AA86-01 10 95113641 95113641 G C MYOF Silent p.V1136V 0.11 TCGA-4Z-AA86-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.30 TCGA-4Z-AA86-01 10 96540357 96540357 C G CYP2C19 Missense_Mutation p.L195V 0.12 deleterious(0.04) benign(0.175) TCGA-4Z-AA86-01 10 98741997 98741997 T A C10orf12 Missense_Mutation p.C284S 0.08 tolerated(0.1) benign(0.026) TCGA-4Z-AA86-01 10 98763895 98763895 C A SLIT1 Silent p.G1265G 0.12 TCGA-4Z-AA86-01 11 113802527 113802527 G T HTR3B Missense_Mutation p.E102D 0.12 tolerated(0.65) benign(0.015) TCGA-4Z-AA86-01 11 12264257 12264259 AAG - MICAL2 In_Frame_Del p.K866del 0.10 TCGA-4Z-AA86-01 11 125891340 125891340 G A CDON Missense_Mutation p.S51F 0.05 deleterious(0) probably_damaging(0.964) TCGA-4Z-AA86-01 11 1261063 1261063 C A MUC5B Missense_Mutation p.F1206L 0.37 unknown(0) TCGA-4Z-AA86-01 11 128844362 128844362 T C ARHGAP32 Silent p.G896G 0.19 TCGA-4Z-AA86-01 11 281565 281565 G A NLRP6 Missense_Mutation p.E611K 0.26 deleterious(0.01) possibly_damaging(0.606) TCGA-4Z-AA86-01 11 5322367 5322367 G T OR51B4 Silent p.P270P 0.17 TCGA-4Z-AA86-01 11 55905037 55905037 G C OR8J3 Missense_Mutation p.S53C 0.08 deleterious(0.01) possibly_damaging(0.873) TCGA-4Z-AA86-01 11 57099139 57099139 C T SSRP1 Intron 0.33 TCGA-4Z-AA86-01 11 5841972 5841972 C T OR52N2 Missense_Mutation p.T136I 0.29 deleterious(0.01) benign(0.03) TCGA-4Z-AA86-01 11 62286724 62286724 G C AHNAK Silent p.L5055L 0.13 TCGA-4Z-AA86-01 11 62288125 62288125 G A AHNAK Silent p.L4588L 0.11 TCGA-4Z-AA86-01 11 62298416 62298416 G C AHNAK Nonsense_Mutation p.S1158* 0.30 TCGA-4Z-AA86-01 11 66616455 66616455 G A PC Missense_Mutation p.S1151L 0.25 deleterious(0) possibly_damaging(0.635) TCGA-4Z-AA86-01 11 66618639 66618639 C T PC Missense_Mutation p.V699M 0.21 deleterious(0.04) probably_damaging(0.989) TCGA-4Z-AA86-01 11 74680674 74680674 G A SPCS2 Missense_Mutation p.V142M 0.25 deleterious(0.01) possibly_damaging(0.851) TCGA-4Z-AA86-01 11 75319253 75319253 G A MAP6 Silent p.F340F 0.12 TCGA-4Z-AA86-01 11 9463660 9463660 G T IPO7 Missense_Mutation p.A979S 0.07 tolerated(0.37) benign(0.024) TCGA-4Z-AA86-01 12 10224041 10224041 A G CLEC1A Missense_Mutation p.F245S 0.15 deleterious(0.01) benign(0.087) TCGA-4Z-AA86-01 12 104715064 104715064 C G TXNRD1 Missense_Mutation p.I395M 0.23 deleterious(0.04) possibly_damaging(0.898) TCGA-4Z-AA86-01 12 129293983 129293983 C G SLC15A4 Missense_Mutation p.L349F 0.05 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA86-01 12 130648351 130648351 C T FZD10 Silent p.I288I 0.13 TCGA-4Z-AA86-01 12 19667670 19667670 C T AEBP2 Missense_Mutation p.S478L 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-4Z-AA86-01 12 29786162 29786162 A G TMTC1 Missense_Mutation p.I349T 0.24 deleterious(0.01) benign(0.066) TCGA-4Z-AA86-01 12 49582774 49582774 C T TUBA1A 5'UTR 0.18 TCGA-4Z-AA86-01 12 49944005 49944005 C T KCNH3 Missense_Mutation p.T604M 0.17 deleterious(0) probably_damaging(0.985) TCGA-4Z-AA86-01 12 53433926 53433926 G C EIF4B Splice_Site p.X586_splice 0.19 TCGA-4Z-AA86-01 12 53663020 53663020 A C ESPL1 Missense_Mutation p.E98D 0.20 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 12 57552204 57552204 C T LRP1 Silent p.F527F 0.09 TCGA-4Z-AA86-01 12 7473374 7473374 G A ACSM4 Silent p.R325R 0.12 TCGA-4Z-AA86-01 12 9711779 9711779 C G RP11-726G1.1 RNA 0.26 TCGA-4Z-AA86-01 13 111531932 111531932 G C ANKRD10 3'UTR 0.33 TCGA-4Z-AA86-01 13 114792882 114792882 C T RASA3 Missense_Mutation p.E196K 0.09 deleterious(0.02) probably_damaging(0.964) TCGA-4Z-AA86-01 13 28626700 28626700 C G FLT3 Missense_Mutation p.C199S 0.14 deleterious(0.03) benign(0.142) TCGA-4Z-AA86-01 13 37607661 37607661 G A SUPT20H Missense_Mutation p.P211L 0.21 deleterious(0) probably_damaging(1) TCGA-4Z-AA86-01 13 49039501 49039501 C G RB1 Nonsense_Mutation p.S829* 0.26 TCGA-4Z-AA86-01 14 106621934 106621934 C T IGHV3-16 Missense_Mutation p.R104K 0.11 deleterious_low_confidence(0.02) benign(0.04) TCGA-4Z-AA86-01 14 20819242 20819242 C T PARP2 Missense_Mutation p.S166L 0.12 deleterious(0.01) benign(0.326) TCGA-4Z-AA86-01 14 22694689 22694689 C G TRAV36DV7 Missense_Mutation p.I11M 0.14 deleterious(0) probably_damaging(0.942) TCGA-4Z-AA86-01 14 47426736 47426736 C T MDGA2 Missense_Mutation p.E644K 0.32 tolerated(0.55) benign(0.242) TCGA-4Z-AA86-01 14 52741532 52741532 A G PTGDR Silent p.R310R 0.13 TCGA-4Z-AA86-01 14 65055919 65055919 C T PPP1R36 Missense_Mutation p.H378Y 0.14 deleterious(0.04) benign(0.124) TCGA-4Z-AA86-01 14 65055968 65055968 C A PPP1R36 Missense_Mutation p.S394Y 0.12 tolerated_low_confidence(0.1) benign(0.021) TCGA-4Z-AA86-01 14 65056036 65056036 C A PPP1R36 Missense_Mutation p.H417N 0.15 deleterious_low_confidence(0.02) benign(0.032) TCGA-4Z-AA86-01 14 77978735 77978735 C G SPTLC2 Missense_Mutation p.E527D 0.18 tolerated(0.1) benign(0.021) TCGA-4Z-AA86-01 15 26825481 26825481 C T GABRB3 Missense_Mutation p.V223I 0.10 tolerated(0.17) benign(0.192) TCGA-4Z-AA86-01 15 34080579 34080579 C A RYR3 Silent p.L3250L 0.14 TCGA-4Z-AA86-01 15 38988888 38988888 G A C15orf53 Missense_Mutation p.S27N 0.12 tolerated_low_confidence(0.77) benign(0.023) TCGA-4Z-AA86-01 15 40468811 40468811 C T BUB1B Missense_Mutation p.A173V 0.10 tolerated(0.54) benign(0.001) TCGA-4Z-AA86-01 15 43527103 43527103 G C TGM5 Missense_Mutation p.S580C 0.31 deleterious(0) possibly_damaging(0.549) TCGA-4Z-AA86-01 15 63883031 63883031 C G USP3 3'UTR 0.14 TCGA-4Z-AA86-01 15 66048724 66048724 G C DENND4A Nonsense_Mutation p.S22* 0.19 TCGA-4Z-AA86-01 15 67687761 67687761 G A IQCH Missense_Mutation p.D589N 0.13 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 15 93470558 93470558 G A CHD2 Missense_Mutation p.E127K 0.11 tolerated(0.36) benign(0.015) TCGA-4Z-AA86-01 16 2376468 2376468 C T ABCA3 5'UTR 0.22 TCGA-4Z-AA86-01 16 28898592 28898592 C G ATP2A1 Missense_Mutation p.F209L 0.33 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA86-01 16 3640038 3640038 G C SLX4 Missense_Mutation p.Q1201E 0.16 deleterious(0.03) possibly_damaging(0.767) TCGA-4Z-AA86-01 16 3640180 3640180 G C SLX4 Silent p.L1153L 0.16 TCGA-4Z-AA86-01 16 3640578 3640578 G A SLX4 Missense_Mutation p.R1021C 0.08 tolerated(0.09) possibly_damaging(0.54) TCGA-4Z-AA86-01 16 3817738 3817738 G T CREBBP Nonsense_Mutation p.S1078* 0.25 TCGA-4Z-AA86-01 16 57736040 57736040 G T CCDC135 Nonsense_Mutation p.E233* 0.18 TCGA-4Z-AA86-01 16 69377325 69377325 C T TMED6 Silent p.K236K 0.19 TCGA-4Z-AA86-01 16 74670451 74670451 G A RFWD3 Nonsense_Mutation p.Q407* 0.14 TCGA-4Z-AA86-01 16 81097383 81097383 C G C16orf46 Missense_Mutation p.E60Q 0.10 deleterious(0.01) benign(0.176) TCGA-4Z-AA86-01 17 1651889 1651889 C T SERPINF2 Intron 0.24 TCGA-4Z-AA86-01 17 29161265 29161265 C A ATAD5 Missense_Mutation p.P56T 0.12 deleterious(0) possibly_damaging(0.619) TCGA-4Z-AA86-01 17 30214281 30214281 C T UTP6 Missense_Mutation p.E199K 0.16 tolerated(0.07) benign(0.356) TCGA-4Z-AA86-01 17 39994310 39994310 C T KLHL10 Silent p.V42V 0.09 TCGA-4Z-AA86-01 17 4389823 4389823 G C SPNS3 Silent p.L465L 0.08 TCGA-4Z-AA86-01 17 4788879 4788879 G A MINK1 Missense_Mutation p.E204K 0.25 deleterious(0) benign(0.266) TCGA-4Z-AA86-01 17 4789241 4789241 G A MINK1 Silent p.E225E 0.24 TCGA-4Z-AA86-01 17 58260575 58260575 C G USP32 Silent p.L1358L 0.06 TCGA-4Z-AA86-01 17 58422964 58422964 C A USP32 Missense_Mutation p.D22Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA86-01 17 60788643 60788643 C G MARCH10 Missense_Mutation p.Q759H 0.05 deleterious(0) probably_damaging(0.935) TCGA-4Z-AA86-01 17 60802301 60802301 G A MARCH10 Missense_Mutation p.S701L 0.06 deleterious(0) probably_damaging(1) TCGA-4Z-AA86-01 17 61666498 61666498 C G DCAF7 Missense_Mutation p.I131M 0.28 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 17 65907442 65907442 C T BPTF Missense_Mutation p.L1148F 0.11 possibly_damaging(0.865) TCGA-4Z-AA86-01 17 66251937 66251937 C T AMZ2 Missense_Mutation p.R283W 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-4Z-AA86-01 17 7576886 7576886 C T TP53 Silent p.K320K 0.27 TCGA-4Z-AA86-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.14 deleterious(0) probably_damaging(0.947) TCGA-4Z-AA86-01 17 78262066 78262066 C T RNF213 Silent p.A238A 0.12 TCGA-4Z-AA86-01 17 8064983 8064983 G T VAMP2 Silent p.S75S 0.30 TCGA-4Z-AA86-01 17 8076700 8076700 C G TMEM107 3'Flank 0.09 TCGA-4Z-AA86-01 17 9923277 9923277 G C GAS7 Intron 0.25 TCGA-4Z-AA86-01 18 46287796 46287796 G C CTIF Missense_Mutation p.Q371H 0.09 deleterious(0.03) benign(0.003) TCGA-4Z-AA86-01 18 56606717 56606717 C G ZNF532 Missense_Mutation p.L857V 0.15 tolerated(0.08) benign(0.13) TCGA-4Z-AA86-01 18 61030057 61030057 C T KDSR Silent p.E51E 0.15 TCGA-4Z-AA86-01 19 18543829 18543829 C T SSBP4 Silent p.I296I 0.14 TCGA-4Z-AA86-01 19 19545932 19545932 A G GATAD2A Intron 0.20 TCGA-4Z-AA86-01 19 19767686 19767686 C G ATP13A1 Missense_Mutation p.E316Q 0.26 tolerated(0.29) benign(0.129) TCGA-4Z-AA86-01 19 32873927 32873927 G A ZNF507 Missense_Mutation p.E934K 0.15 deleterious(0) possibly_damaging(0.905) TCGA-4Z-AA86-01 19 37643687 37643687 G A ZNF585A Missense_Mutation p.H317Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 19 41038642 41038642 G A SPTBN4 Silent p.L1353L 0.19 TCGA-4Z-AA86-01 19 44891631 44891631 G C ZNF285 Missense_Mutation p.S259C 0.19 tolerated(0.18) benign(0.005) TCGA-4Z-AA86-01 19 51918853 51918853 C T SIGLEC10 Silent p.L347L 0.04 TCGA-4Z-AA86-01 19 52091120 52091120 C T ZNF175 Silent p.F512F 0.22 TCGA-4Z-AA86-01 19 52619320 52619320 G C ZNF616 Nonsense_Mutation p.S366* 0.09 TCGA-4Z-AA86-01 19 52659999 52659999 G A ZNF836 Nonsense_Mutation p.Q313* 0.10 TCGA-4Z-AA86-01 19 53576752 53576752 C A ZNF160 Intron 0.21 TCGA-4Z-AA86-01 19 54649689 54649689 G - CNOT3 Frame_Shift_Del p.E250Rfs*85 0.11 TCGA-4Z-AA86-01 19 56228162 56228162 C G NLRP9 Missense_Mutation p.L754F 0.14 deleterious(0.01) benign(0.06) TCGA-4Z-AA86-01 19 59068511 59068511 C T UBE2M Silent p.L41L 0.18 TCGA-4Z-AA86-01 1 116244023 116244023 G T CASQ2 Missense_Mutation p.P347T 0.08 tolerated(0.29) benign(0.056) TCGA-4Z-AA86-01 1 12854398 12854398 C G PRAMEF1 Missense_Mutation p.Q208E 0.10 tolerated(0.08) benign(0.002) TCGA-4Z-AA86-01 1 149857978 149857978 G T HIST2H2BE Missense_Mutation p.F71L 0.13 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-4Z-AA86-01 1 150307587 150307587 G C PRPF3 Missense_Mutation p.D304H 0.07 deleterious(0.01) possibly_damaging(0.76) TCGA-4Z-AA86-01 1 151681756 151681756 C G CELF3 Missense_Mutation p.E116Q 0.08 tolerated(0.3) probably_damaging(0.909) TCGA-4Z-AA86-01 1 151779987 151779987 G T RORC Missense_Mutation p.F506L 0.12 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA86-01 1 151823664 151823664 T C THEM5 Missense_Mutation p.K110R 0.29 tolerated(0.4) benign(0.081) TCGA-4Z-AA86-01 1 152284482 152284482 C T FLG Silent p.E960E 0.16 TCGA-4Z-AA86-01 1 152284912 152284912 C G FLG Missense_Mutation p.R817T 0.21 possibly_damaging(0.707) TCGA-4Z-AA86-01 1 152285339 152285339 C G FLG Missense_Mutation p.D675H 0.22 probably_damaging(0.945) TCGA-4Z-AA86-01 1 152326231 152326231 C G FLG2 Missense_Mutation p.R1344T 0.12 benign(0) TCGA-4Z-AA86-01 1 153654315 153654315 G C NPR1 Missense_Mutation p.G391R 0.07 deleterious(0) probably_damaging(1) TCGA-4Z-AA86-01 1 155753858 155753858 G A GON4L Missense_Mutation p.S604F 0.08 deleterious(0) probably_damaging(0.992) TCGA-4Z-AA86-01 1 156180113 156180113 C T SLC25A44 Missense_Mutation p.S279L 0.23 deleterious(0) probably_damaging(0.972) TCGA-4Z-AA86-01 1 158435712 158435712 G C OR10K1 Missense_Mutation p.D121H 0.32 deleterious(0) probably_damaging(0.966) TCGA-4Z-AA86-01 1 158436236 158436236 G A OR10K1 Silent p.K295K 0.26 TCGA-4Z-AA86-01 1 158436256 158436256 G A OR10K1 Missense_Mutation p.R302Q 0.27 tolerated(0.16) benign(0.004) TCGA-4Z-AA86-01 1 160249910 160249910 C T PEX19 Missense_Mutation p.E241K 0.05 tolerated(0.11) benign(0.096) TCGA-4Z-AA86-01 1 161019033 161019033 G A ARHGAP30 Missense_Mutation p.S593F 0.05 tolerated(0.13) benign(0.01) TCGA-4Z-AA86-01 1 161187860 161187860 G A FCER1G Missense_Mutation p.R45Q 0.05 deleterious(0.01) probably_damaging(0.98) TCGA-4Z-AA86-01 1 161192237 161192237 C G APOA2 Missense_Mutation p.L87F 0.04 tolerated(0.77) benign(0.039) TCGA-4Z-AA86-01 1 161192273 161192273 C T AL590714.1 Nonsense_Mutation p.Q70* 0.03 TCGA-4Z-AA86-01 1 161192749 161192749 C G APOA2 Silent p.L48L 0.03 TCGA-4Z-AA86-01 1 161276239 161276239 C G MPZ Missense_Mutation p.G155A 0.04 tolerated(0.31) probably_damaging(0.996) TCGA-4Z-AA86-01 1 173628553 173628553 T A ANKRD45 Missense_Mutation p.E2V 0.30 deleterious_low_confidence(0) unknown(0) TCGA-4Z-AA86-01 1 179853832 179853832 G A TOR1AIP1 Missense_Mutation p.E161K 0.13 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-4Z-AA86-01 1 180063698 180063698 G A CEP350 Missense_Mutation p.E2820K 0.12 benign(0.371) TCGA-4Z-AA86-01 1 180065289 180065289 G A CEP350 Silent p.V3012V 0.25 TCGA-4Z-AA86-01 1 186269244 186269244 G A PRG4 Missense_Mutation p.R33K 0.12 probably_damaging(0.992) TCGA-4Z-AA86-01 1 203743121 203743121 C T LAX1 Missense_Mutation p.S170L 0.10 tolerated(0.07) benign(0.006) TCGA-4Z-AA86-01 1 204226675 204226675 G A PLEKHA6 Silent p.L444L 0.24 TCGA-4Z-AA86-01 1 204228438 204228438 G T PLEKHA6 Missense_Mutation p.Q319K 0.23 deleterious(0) probably_damaging(0.956) TCGA-4Z-AA86-01 1 207782665 207782665 C G CR1 Missense_Mutation p.S1976C 0.15 tolerated(0.06) probably_damaging(0.949) TCGA-4Z-AA86-01 1 214705742 214705742 G A PTPN14 Intron 0.33 TCGA-4Z-AA86-01 1 229738564 229738564 T C TAF5L Missense_Mutation p.E117G 0.06 tolerated(0.1) benign(0.016) TCGA-4Z-AA86-01 1 231557029 231557029 C T EGLN1 Missense_Mutation p.M202I 0.11 deleterious(0.02) benign(0.114) TCGA-4Z-AA86-01 1 234445046 234445046 G A SLC35F3 Missense_Mutation p.D270N 0.06 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 1 236180546 236180546 G A NID1 Missense_Mutation p.S719L 0.24 tolerated(0.26) benign(0.014) TCGA-4Z-AA86-01 1 243708880 243708880 C T AKT3 Missense_Mutation p.D395N 0.13 deleterious(0.04) possibly_damaging(0.899) TCGA-4Z-AA86-01 1 248756566 248756566 G A OR2T10 Silent p.F168F 0.31 TCGA-4Z-AA86-01 1 248756794 248756794 G A OR2T10 Silent p.I92I 0.28 TCGA-4Z-AA86-01 1 27426986 27426986 C T SLC9A1 Missense_Mutation p.E754K 0.13 tolerated(0.28) benign(0.002) TCGA-4Z-AA86-01 1 35480460 35480460 C A ZMYM6 Silent p.V211V 0.14 TCGA-4Z-AA86-01 1 36557423 36557423 G A ADPRHL2 Silent p.Q171Q 0.11 TCGA-4Z-AA86-01 1 39341511 39341511 G A GJA9 Missense_Mutation p.S87L 0.11 deleterious(0) benign(0.286) TCGA-4Z-AA86-01 1 43022020 43022020 C G CCDC30 Missense_Mutation p.Q207E 0.18 tolerated(0.35) benign(0.016) TCGA-4Z-AA86-01 1 43804263 43804263 G C MPL Missense_Mutation p.G88A 0.38 deleterious(0.04) possibly_damaging(0.751) TCGA-4Z-AA86-01 1 45243706 45243706 G T RPS8 Missense_Mutation p.R141L 0.41 tolerated(0.19) benign(0.087) TCGA-4Z-AA86-01 1 52896986 52896986 G C ZCCHC11 Silent p.V1470V 0.29 TCGA-4Z-AA86-01 1 55464832 55464832 G T BSND 5'UTR 0.10 TCGA-4Z-AA86-01 1 79387374 79387374 G C ELTD1 Nonsense_Mutation p.S394* 0.06 TCGA-4Z-AA86-01 20 19998006 19998006 C G NAA20 5'UTR 0.27 TCGA-4Z-AA86-01 20 25282958 25282958 G A ABHD12 Nonsense_Mutation p.R352* 0.18 TCGA-4Z-AA86-01 20 31643287 31643287 C G BPIFB3 Missense_Mutation p.P20A 0.10 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA86-01 20 44845629 44845629 A G CDH22 Missense_Mutation p.V225A 0.28 deleterious(0) possibly_damaging(0.609) TCGA-4Z-AA86-01 20 44869807 44869807 C G CDH22 Silent p.L115L 0.11 TCGA-4Z-AA86-01 20 60991266 60991266 C T RBBP8NL Missense_Mutation p.E114K 0.09 deleterious(0) possibly_damaging(0.849) TCGA-4Z-AA86-01 21 22782762 22782762 G A NCAM2 Missense_Mutation p.G455E 0.11 tolerated(0.32) benign(0.007) TCGA-4Z-AA86-01 21 47929218 47929218 A G DIP2A Missense_Mutation p.N278S 0.11 deleterious(0.02) probably_damaging(0.956) TCGA-4Z-AA86-01 22 17072190 17072190 C T CCT8L2 Missense_Mutation p.M417I 0.38 tolerated(0.41) possibly_damaging(0.867) TCGA-4Z-AA86-01 22 19188954 19188954 G C CLTCL1 Silent p.L1217L 0.09 TCGA-4Z-AA86-01 22 20760739 20760739 C G ZNF74 Missense_Mutation p.F472L 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-4Z-AA86-01 22 26830102 26830102 C T ASPHD2 Missense_Mutation p.P174L 0.14 deleterious(0.04) probably_damaging(0.929) TCGA-4Z-AA86-01 22 32588966 32588966 A T RFPL2 Missense_Mutation p.L160Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 22 45595791 45595791 G A KIAA0930 Silent p.N331N 0.31 TCGA-4Z-AA86-01 22 47107008 47107008 C G CERK Missense_Mutation p.E182Q 0.14 tolerated(0.1) benign(0.363) TCGA-4Z-AA86-01 2 101924811 101924811 C A RNF149 Silent p.P80P 0.27 TCGA-4Z-AA86-01 2 108604668 108604668 G A SLC5A7 Silent p.L19L 0.07 TCGA-4Z-AA86-01 2 135757558 135757558 C T MAP3K19 Missense_Mutation p.R88K 0.07 tolerated(0.5) benign(0.004) TCGA-4Z-AA86-01 2 168105419 168105419 G A XIRP2 Missense_Mutation p.G2506E 0.10 benign(0.001) TCGA-4Z-AA86-01 2 189849538 189849538 C G COL3A1 Silent p.V44V 0.13 TCGA-4Z-AA86-01 2 198359446 198359446 C G HSPD1 Missense_Mutation p.E181Q 0.21 tolerated(0.13) benign(0.047) TCGA-4Z-AA86-01 2 204354651 204354651 G A RAPH1 Missense_Mutation p.H130Y 0.26 possibly_damaging(0.51) TCGA-4Z-AA86-01 2 20647530 20647530 G A RHOB Missense_Mutation p.E102K 0.30 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA86-01 2 225265853 225265853 C T FAM124B Silent p.E211E 0.07 TCGA-4Z-AA86-01 2 225265855 225265855 C T FAM124B Missense_Mutation p.E211K 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-4Z-AA86-01 2 234526524 234526524 A T UGT1A8 Silent p.V57V 0.06 TCGA-4Z-AA86-01 2 26174706 26174706 T C KIF3C Missense_Mutation p.D653G 0.09 benign(0.175) TCGA-4Z-AA86-01 2 27324133 27324133 C G CGREF1 3'UTR 0.05 TCGA-4Z-AA86-01 2 27799490 27799490 G C C2orf16 Missense_Mutation p.L17F 0.27 tolerated(0.13) possibly_damaging(0.765) TCGA-4Z-AA86-01 2 27800241 27800241 G A C2orf16 Missense_Mutation p.E268K 0.31 tolerated(0.11) possibly_damaging(0.58) TCGA-4Z-AA86-01 2 29293759 29293759 G C C2orf71 Missense_Mutation p.F1123L 0.10 deleterious(0.03) probably_damaging(0.994) TCGA-4Z-AA86-01 2 30756161 30756161 C G LCLAT1 Silent p.L153L 0.31 TCGA-4Z-AA86-01 2 32352058 32352058 C G SPAST Silent p.L380L 0.24 TCGA-4Z-AA86-01 2 32666516 32666516 A G BIRC6 Silent p.S1310S 0.30 TCGA-4Z-AA86-01 2 32800360 32800360 G C BIRC6 Missense_Mutation p.E4428Q 0.13 possibly_damaging(0.829) TCGA-4Z-AA86-01 2 44457786 44457786 G T PPM1B Nonsense_Mutation p.E457* 0.08 TCGA-4Z-AA86-01 2 47238477 47238477 A G TTC7A Missense_Mutation p.Y432C 0.10 tolerated(0.15) benign(0.013) TCGA-4Z-AA86-01 2 73315528 73315528 C G RAB11FIP5 Silent p.L406L 0.17 TCGA-4Z-AA86-01 2 80529675 80529675 G A LRRTM1 Nonsense_Mutation p.Q424* 0.14 TCGA-4Z-AA86-01 2 98418970 98418970 C G TMEM131 Missense_Mutation p.D858H 0.34 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 2 99938530 99938530 C A TXNDC9 Missense_Mutation p.D151Y 0.05 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA86-01 3 12475649 12475649 G A PPARG 3'UTR 0.12 TCGA-4Z-AA86-01 3 129547330 129547330 G C TMCC1 5'UTR 0.24 TCGA-4Z-AA86-01 3 142141571 142141571 C T XRN1 Missense_Mutation p.D274N 0.13 tolerated(0.08) benign(0.196) TCGA-4Z-AA86-01 3 142141711 142141711 C G XRN1 Missense_Mutation p.R255T 0.08 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA86-01 3 14518848 14518848 G C SLC6A6 Missense_Mutation p.E449Q 0.18 tolerated(0.25) benign(0.057) TCGA-4Z-AA86-01 3 148925367 148925367 G C CP Silent p.L273L 0.11 TCGA-4Z-AA86-01 3 157099133 157099133 C T VEPH1 Silent p.V313V 0.11 TCGA-4Z-AA86-01 3 196388303 196388303 G A NRROS Missense_Mutation p.D597N 0.19 tolerated(0.77) benign(0.01) TCGA-4Z-AA86-01 3 197427373 197427373 C T KIAA0226 Intron 0.39 TCGA-4Z-AA86-01 3 46944832 46944832 G - PTH1R Frame_Shift_Del p.S491Afs*15 0.18 TCGA-4Z-AA86-01 3 47142964 47142964 G A SETD2 Nonsense_Mutation p.Q1667* 0.26 TCGA-4Z-AA86-01 3 49339822 49339822 C A USP4 Missense_Mutation p.D428Y 0.16 deleterious(0.01) possibly_damaging(0.683) TCGA-4Z-AA86-01 3 9426371 9426371 G A THUMPD3 Silent p.%3D 0.20 TCGA-4Z-AA86-01 3 97888417 97888417 C T OR5H15 Silent p.L292L 0.19 TCGA-4Z-AA86-01 4 141456971 141456971 G C ELMOD2 Missense_Mutation p.E86Q 0.23 tolerated(1) benign(0.01) TCGA-4Z-AA86-01 4 177041056 177041056 G A WDR17 Missense_Mutation p.D140N 0.10 tolerated(0.21) benign(0.014) TCGA-4Z-AA86-01 4 177093544 177093544 G C WDR17 Missense_Mutation p.E1080Q 0.11 tolerated(0.12) benign(0.24) TCGA-4Z-AA86-01 4 3319328 3319328 T G RGS12 Missense_Mutation p.C477W 0.15 tolerated(0.08) possibly_damaging(0.781) TCGA-4Z-AA86-01 4 38774934 38774934 C T TLR10 Missense_Mutation p.D760N 0.28 deleterious(0) possibly_damaging(0.618) TCGA-4Z-AA86-01 4 38774977 38774977 C G TLR10 Silent p.L745L 0.25 TCGA-4Z-AA86-01 4 38775501 38775501 C T TLR10 Missense_Mutation p.E571K 0.12 tolerated(0.1) benign(0.188) TCGA-4Z-AA86-01 4 65188509 65188509 G A TECRL Silent p.G111G 0.16 TCGA-4Z-AA86-01 4 68919643 68919643 G C TMPRSS11F Nonsense_Mutation p.S434* 0.11 TCGA-4Z-AA86-01 4 71895096 71895096 T A DCK 3'UTR 0.13 TCGA-4Z-AA86-01 4 79258893 79258893 C T FRAS1 Missense_Mutation p.H782Y 0.13 benign(0.012) TCGA-4Z-AA86-01 4 79258928 79258928 C T FRAS1 Silent p.S793S 0.14 TCGA-4Z-AA86-01 4 85642618 85642618 C T WDFY3 Missense_Mutation p.E2517K 0.12 tolerated(0.17) benign(0.007) TCGA-4Z-AA86-01 4 85699717 85699717 C G WDFY3 Missense_Mutation p.G1486A 0.15 tolerated(0.15) possibly_damaging(0.566) TCGA-4Z-AA86-01 4 99214603 99214603 G A RAP1GDS1 Missense_Mutation p.D18N 0.11 deleterious(0.02) possibly_damaging(0.678) TCGA-4Z-AA86-01 5 140236795 140236795 C T PCDHA10 Silent p.L388L 0.13 TCGA-4Z-AA86-01 5 153056622 153056622 G C GRIA1 Missense_Mutation p.Q320H 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-4Z-AA86-01 5 15936942 15936942 T C FBXL7 Missense_Mutation p.C375R 0.35 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA86-01 5 177580526 177580526 C G NHP2 Missense_Mutation p.E66Q 0.09 tolerated(0.06) probably_damaging(0.99) TCGA-4Z-AA86-01 5 41004990 41004990 C G MROH2B Silent p.G1299G 0.18 TCGA-4Z-AA86-01 5 43539109 43539109 G C PAIP1 Missense_Mutation p.Q255E 0.15 tolerated(0.89) benign(0.006) TCGA-4Z-AA86-01 5 6606938 6606938 A C NSUN2 Silent p.P532P 0.05 TCGA-4Z-AA86-01 5 72151732 72151732 C T TNPO1 Silent p.L113L 0.11 TCGA-4Z-AA86-01 5 86690883 86690883 G C CCNH Nonsense_Mutation p.S304* 0.06 TCGA-4Z-AA86-01 6 121526278 121526278 G C TBC1D32 Missense_Mutation p.S838C 0.10 deleterious(0) probably_damaging(0.959) TCGA-4Z-AA86-01 6 131929070 131929070 C G MED23 Missense_Mutation p.E407Q 0.13 tolerated(0.19) probably_damaging(0.988) TCGA-4Z-AA86-01 6 152755013 152755013 C T SYNE1 Missense_Mutation p.V1460I 0.08 benign(0) TCGA-4Z-AA86-01 6 160645759 160645759 C T SLC22A2 Missense_Mutation p.E527K 0.08 tolerated(0.06) benign(0.133) TCGA-4Z-AA86-01 6 22294697 22294697 G A PRL Missense_Mutation p.R49C 0.17 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA86-01 6 2623984 2623984 C T C6orf195 Missense_Mutation p.E25K 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-4Z-AA86-01 6 31785264 31785264 C T HSPA1A Silent p.V577V 0.19 TCGA-4Z-AA86-01 6 32726682 32726682 G C HLA-DQB2 Missense_Mutation p.I197M 0.12 deleterious(0) possibly_damaging(0.756) TCGA-4Z-AA86-01 6 34846442 34846442 C T TAF11 Missense_Mutation p.M187I 0.19 tolerated(0.2) benign(0.027) TCGA-4Z-AA86-01 6 42832396 42832396 G A GLTSCR1L Splice_Site p.X818_splice 0.21 TCGA-4Z-AA86-01 6 42832959 42832959 G C GLTSCR1L Missense_Mutation p.K1005N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-4Z-AA86-01 6 45399754 45399754 G A RUNX2 Missense_Mutation p.R193Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA86-01 6 6347533 6347533 G A SNAPC5P1 RNA 0.30 TCGA-4Z-AA86-01 6 7572193 7572193 G C DSP Missense_Mutation p.K674N 0.20 probably_damaging(0.972) TCGA-4Z-AA86-01 7 100607832 100607832 C T MUC3A Missense_Mutation p.T660I 0.08 tolerated(0.09) possibly_damaging(0.527) TCGA-4Z-AA86-01 7 100860029 100860029 C A PLOD3 Nonsense_Mutation p.E50* 0.25 TCGA-4Z-AA86-01 7 14620543 14620543 G A DGKB Missense_Mutation p.A519V 0.10 deleterious(0) possibly_damaging(0.901) TCGA-4Z-AA86-01 7 158494578 158494578 C G NCAPG2 Missense_Mutation p.E5Q 0.06 deleterious(0.01) possibly_damaging(0.548) TCGA-4Z-AA86-01 7 20441589 20441589 G C ITGB8 Missense_Mutation p.E509D 0.24 tolerated(0.46) benign(0.003) TCGA-4Z-AA86-01 7 48081094 48081094 C T C7orf57 Silent p.L73L 0.28 TCGA-4Z-AA86-01 7 56128263 56128263 C A CCT6A Intron 0.60 TCGA-4Z-AA86-01 7 6042261 6042261 G A PMS2 Silent p.V120V 0.08 TCGA-4Z-AA86-01 7 647068 647068 G A PRKAR1B Silent p.F154F 0.06 TCGA-4Z-AA86-01 7 87173537 87173537 C A ABCB1 Nonsense_Mutation p.E707* 0.10 TCGA-4Z-AA86-01 7 91842710 91842710 G C KRIT1 Silent p.L608L 0.21 TCGA-4Z-AA86-01 8 145736560 145736560 G C MFSD3 3'UTR 0.11 TCGA-4Z-AA86-01 8 18541542 18541542 G C PSD3 Intron 0.20 TCGA-4Z-AA86-01 8 59329436 59329436 G A UBXN2B Missense_Mutation p.E38K 0.18 tolerated(0.05) possibly_damaging(0.546) TCGA-4Z-AA86-01 8 8748927 8748927 C G MFHAS1 Missense_Mutation p.E548Q 0.34 deleterious(0.03) probably_damaging(0.994) TCGA-4Z-AA86-01 9 100667059 100667059 G A C9orf156 Missense_Mutation p.H428Y 0.19 tolerated(0.3) benign(0) TCGA-4Z-AA86-01 9 101980878 101980878 C G ALG2 Missense_Mutation p.D197H 0.10 tolerated(0.12) benign(0.003) TCGA-4Z-AA86-01 9 103060272 103060272 C T INVS Missense_Mutation p.S1024F 0.09 deleterious_low_confidence(0.02) benign(0.344) TCGA-4Z-AA86-01 9 132658177 132658177 C A FNBP1 Missense_Mutation p.D596Y 0.22 deleterious(0.01) possibly_damaging(0.908) TCGA-4Z-AA86-01 9 134363319 134363319 C A PRRC2B Missense_Mutation p.P2021T 0.19 deleterious(0.02) possibly_damaging(0.486) TCGA-4Z-AA86-01 9 140458893 140458893 C G DPH7 Missense_Mutation p.K314N 0.15 tolerated(0.2) benign(0.045) TCGA-4Z-AA86-01 9 33047347 33047347 G C SMU1 Missense_Mutation p.Q496E 0.11 tolerated(0.29) benign(0.013) TCGA-4Z-AA86-01 9 35738548 35738548 C T GBA2 Missense_Mutation p.D677N 0.19 deleterious(0) probably_damaging(1) TCGA-4Z-AA86-01 9 97912337 97912337 C T FANCC Missense_Mutation p.R185Q 0.26 tolerated(0.36) benign(0.029) TCGA-4Z-AA86-01 9 99580848 99580848 G C ZNF782 Missense_Mutation p.S486C 0.12 deleterious(0.05) possibly_damaging(0.879) TCGA-4Z-AA86-01 X 105937235 105937235 G A RNF128 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.076) TCGA-4Z-AA86-01 X 153581396 153581396 C A FLNA Nonsense_Mutation p.E2067* 0.55 TCGA-4Z-AA86-01 X 41047252 41047252 G C USP9X Missense_Mutation p.R1231T 0.45 tolerated(0.35) benign(0.02) TCGA-4Z-AA86-01 X 53279469 53279469 G C IQSEC2 Silent p.L763L 0.48 TCGA-4Z-AA86-01 X 77387030 77387030 C G TAF9B 3'UTR 0.19 TCGA-4Z-AA86-01 X 79282269 79282269 G C TBX22 Missense_Mutation p.D234H 0.55 deleterious(0) possibly_damaging(0.844) TCGA-4Z-AA87-01 10 103530308 103530308 C G FGF8 Missense_Mutation p.Q171H 0.20 deleterious(0.03) probably_damaging(0.936) TCGA-4Z-AA87-01 10 105420777 105420777 C T SH3PXD2A Missense_Mutation p.G190R 0.18 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 10 112258061 112258061 C A DUSP5 Nonsense_Mutation p.S61* 0.30 TCGA-4Z-AA87-01 10 124390511 124390511 C A DMBT1 Silent p.S1891S 0.07 TCGA-4Z-AA87-01 10 127431657 127431657 A T EDRF1 Missense_Mutation p.D801V 0.17 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA87-01 10 26310532 26310532 C A MYO3A Missense_Mutation p.P229Q 0.02 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 10 26998639 26998639 C T PDSS1 Nonsense_Mutation p.R137* 0.06 TCGA-4Z-AA87-01 10 27537382 27537382 C G RP11-85G18.6 Intron 0.65 TCGA-4Z-AA87-01 10 61822997 61822997 G - ANK3 Frame_Shift_Del p.S4156Wfs*3 0.28 TCGA-4Z-AA87-01 10 6552958 6552958 C T PRKCQ Nonsense_Mutation p.W106* 0.05 TCGA-4Z-AA87-01 10 70191724 70191724 C G DNA2 Missense_Mutation p.L712F 0.25 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA87-01 10 7212906 7212906 T G SFMBT2 Missense_Mutation p.K843T 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-4Z-AA87-01 10 72633176 72633176 C A SGPL1 Missense_Mutation p.F376L 0.30 deleterious(0.01) possibly_damaging(0.528) TCGA-4Z-AA87-01 10 8055748 8055748 G C TAF3 Missense_Mutation p.D875H 0.03 deleterious(0) benign(0.015) TCGA-4Z-AA87-01 10 8055784 8055784 G A TAF3 Missense_Mutation p.D887N 0.03 deleterious(0.02) benign(0) TCGA-4Z-AA87-01 10 83635727 83635727 C T NRG3 Missense_Mutation p.P211S 0.22 tolerated(0.34) possibly_damaging(0.526) TCGA-4Z-AA87-01 10 95353738 95353738 G A RBP4 Missense_Mutation p.S137F 0.39 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.50 TCGA-4Z-AA87-01 11 11941735 11941735 G C USP47 Missense_Mutation p.E266D 0.20 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA87-01 11 124294259 124294259 G C OR8B4 Missense_Mutation p.S170C 0.56 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-4Z-AA87-01 11 124637028 124637028 G C MSANTD2 3'UTR 0.59 TCGA-4Z-AA87-01 11 20057559 20057559 C T NAV2 Silent p.L964L 0.47 TCGA-4Z-AA87-01 11 294638 294638 C A ATHL1 Missense_Mutation p.F701L 0.22 deleterious_low_confidence(0.05) benign(0) TCGA-4Z-AA87-01 11 30937068 30937068 C G DCDC1 Missense_Mutation p.E1215Q 0.32 tolerated(0.1) benign(0.001) TCGA-4Z-AA87-01 11 30937078 30937078 C T DCDC1 Nonsense_Mutation p.W1211* 0.37 TCGA-4Z-AA87-01 11 36595452 36595452 G A RAG1 Missense_Mutation p.V200M 0.26 tolerated_low_confidence(0.1) benign(0.09) TCGA-4Z-AA87-01 11 47281380 47281380 G A NR1H3 Missense_Mutation p.A28T 0.22 tolerated_low_confidence(0.24) benign(0.003) TCGA-4Z-AA87-01 11 56019877 56019877 A C OR5T3 Missense_Mutation p.T68P 0.09 deleterious(0) probably_damaging(0.987) TCGA-4Z-AA87-01 11 598454 598454 C G PHRF1 Missense_Mutation p.Q326E 0.14 tolerated(0.06) benign(0.038) TCGA-4Z-AA87-01 11 62489717 62489717 C G HNRNPUL2 Missense_Mutation p.E411Q 0.41 tolerated(0.1) benign(0.048) TCGA-4Z-AA87-01 11 63994387 63994387 G T NUDT22 Missense_Mutation p.R88L 0.39 deleterious(0) possibly_damaging(0.82) TCGA-4Z-AA87-01 11 65034945 65034945 C T POLA2 Intron 0.23 TCGA-4Z-AA87-01 11 65036196 65036196 C G POLA2 Nonsense_Mutation p.S117* 0.33 TCGA-4Z-AA87-01 11 688404 688404 C G DEAF1 Silent p.L148L 0.24 TCGA-4Z-AA87-01 11 7530939 7530939 G A OLFML1 Silent p.K243K 0.17 TCGA-4Z-AA87-01 12 105601821 105601821 G A APPL2 Silent p.V140V 0.31 TCGA-4Z-AA87-01 12 109577362 109577362 C G ACACB Missense_Mutation p.S51C 0.14 tolerated_low_confidence(0.06) benign(0.006) TCGA-4Z-AA87-01 12 113448262 113448262 G T OAS2 Silent p.L711L 0.44 TCGA-4Z-AA87-01 12 122717471 122717471 G A VPS33A Silent p.L495L 0.20 TCGA-4Z-AA87-01 12 21790007 21790010 TTAC AA LDHB Frame_Shift_Del p.V278Lfs*7 0.38 TCGA-4Z-AA87-01 12 26812147 26812147 G A ITPR2 Silent p.I595I 0.05 TCGA-4Z-AA87-01 12 29757111 29757111 C G TMTC1 Missense_Mutation p.S417T 0.51 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA87-01 12 44148851 44148851 A G PUS7L Silent p.N66N 0.06 TCGA-4Z-AA87-01 12 50355910 50355910 C T AQP5 Missense_Mutation p.S37L 0.28 tolerated(0.16) benign(0.05) TCGA-4Z-AA87-01 12 54422457 54422457 C G HOXC6 Missense_Mutation p.S51W 0.25 deleterious(0.01) probably_damaging(0.965) TCGA-4Z-AA87-01 12 56567542 56567542 G C SMARCC2 Missense_Mutation p.H530D 0.22 deleterious(0) benign(0.227) TCGA-4Z-AA87-01 12 56712042 56712042 C T PAN2 Missense_Mutation p.E1185K 0.15 deleterious(0.02) benign(0.039) TCGA-4Z-AA87-01 12 63544456 63544456 T C AVPR1A Missense_Mutation p.E54G 0.14 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA87-01 12 66909536 66909536 G A GRIP1 Missense_Mutation p.T196M 0.34 deleterious(0) probably_damaging(0.917) TCGA-4Z-AA87-01 12 6709148 6709148 C G CHD4 Missense_Mutation p.E425Q 0.22 deleterious(0.01) possibly_damaging(0.727) TCGA-4Z-AA87-01 12 7047065 7047065 C A ATN1 Missense_Mutation p.F784L 0.40 probably_damaging(0.977) TCGA-4Z-AA87-01 12 93157832 93157832 G C PLEKHG7 Missense_Mutation p.D266H 0.22 deleterious(0.01) possibly_damaging(0.451) TCGA-4Z-AA87-01 13 100617664 100617664 G A ZIC5 Silent p.Y653Y 0.41 TCGA-4Z-AA87-01 13 22275368 22275368 G A FGF9 Missense_Mutation p.E141K 0.25 deleterious(0.03) probably_damaging(0.93) TCGA-4Z-AA87-01 13 36383154 36383154 C G DCLK1 Splice_Site p.X589_splice 0.17 TCGA-4Z-AA87-01 13 39585401 39585401 C G PROSER1 3'UTR 0.34 TCGA-4Z-AA87-01 13 50586119 50586119 A G TRIM13 Missense_Mutation p.S18G 0.23 tolerated(0.59) benign(0.034) TCGA-4Z-AA87-01 13 73309140 73309140 A G BORA Silent p.E101E 0.06 TCGA-4Z-AA87-01 13 73327873 73327873 G A BORA Missense_Mutation p.D510N 0.09 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 13 73395994 73395997 AGGA - PIBF1 Frame_Shift_Del p.E228Ifs*17 0.16 TCGA-4Z-AA87-01 13 73636032 73636032 C G KLF5 Missense_Mutation p.Q99E 0.33 tolerated(0.12) possibly_damaging(0.585) TCGA-4Z-AA87-01 14 24901328 24901328 C T KHNYN Silent p.L287L 0.19 TCGA-4Z-AA87-01 14 52899095 52899095 C G TXNDC16 Missense_Mutation p.R802T 0.33 tolerated_low_confidence(0.34) benign(0.004) TCGA-4Z-AA87-01 14 62542005 62542005 A G SYT16 Missense_Mutation p.R297G 0.23 tolerated(0.22) benign(0.001) TCGA-4Z-AA87-01 14 92170918 92170918 G C CATSPERB Missense_Mutation p.F198L 0.83 tolerated(0.82) benign(0.086) TCGA-4Z-AA87-01 14 99642429 99642429 G C BCL11B Missense_Mutation p.I248M 0.75 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA87-01 15 100340031 100340031 G A DNM1P46 RNA 0.31 TCGA-4Z-AA87-01 15 37390328 37390328 C T MEIS2 Missense_Mutation p.A29T 0.30 tolerated(0.18) benign(0.011) TCGA-4Z-AA87-01 15 39881454 39881454 G C THBS1 Missense_Mutation p.E609Q 0.42 tolerated(0.2) benign(0.371) TCGA-4Z-AA87-01 15 44057707 44057707 C T PDIA3 Missense_Mutation p.A221V 0.39 tolerated(0.39) benign(0) TCGA-4Z-AA87-01 15 45028791 45028791 G C TRIM69 5'UTR 0.33 TCGA-4Z-AA87-01 15 45561681 45561681 A T SLC28A2 Missense_Mutation p.K505I 0.35 tolerated(0.13) probably_damaging(0.933) TCGA-4Z-AA87-01 15 74032576 74032576 G A C15orf59 Silent p.F188F 0.21 TCGA-4Z-AA87-01 15 77134134 77134134 G C SCAPER Missense_Mutation p.R112G 0.14 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA87-01 15 81274463 81274463 C G MESDC2 Missense_Mutation p.D92H 0.15 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 15 81601215 81601215 C A IL16 3'Flank 0.41 TCGA-4Z-AA87-01 15 90026313 90026313 G A RHCG Silent p.L169L 0.28 TCGA-4Z-AA87-01 15 90799029 90799029 G T TTLL13 Missense_Mutation p.D154Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA87-01 16 1557609 1557609 C G TELO2 Missense_Mutation p.R767G 0.33 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 16 18796045 18796045 G C RPS15A Intron 0.18 TCGA-4Z-AA87-01 16 18847849 18847849 G A SMG1 Missense_Mutation p.S2537F 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-4Z-AA87-01 16 24788436 24788436 C T TNRC6A Nonsense_Mutation p.Q116* 0.33 TCGA-4Z-AA87-01 16 28946784 28946784 G A CD19 Silent p.L285L 0.25 TCGA-4Z-AA87-01 16 3598711 3598711 G A NLRC3 Silent p.I928I 0.43 TCGA-4Z-AA87-01 16 422243 422243 G A TMEM8A Missense_Mutation p.S687L 0.19 deleterious(0.03) probably_damaging(0.957) TCGA-4Z-AA87-01 16 48201215 48201215 G T ABCC11 Silent p.L1373L 0.32 TCGA-4Z-AA87-01 16 49672370 49672370 G A ZNF423 Silent p.F231F 0.42 TCGA-4Z-AA87-01 16 56672671 56672671 C T MT1A Silent p.C7C 0.13 TCGA-4Z-AA87-01 16 68014178 68014178 C T DPEP3 Missense_Mutation p.A61T 0.38 tolerated_low_confidence(0.36) benign(0.008) TCGA-4Z-AA87-01 16 84778898 84778898 C G USP10 Missense_Mutation p.Q271E 0.48 tolerated_low_confidence(0.24) benign(0.003) TCGA-4Z-AA87-01 16 89220540 89220540 G A ACSF3 Silent p.L552L 0.25 TCGA-4Z-AA87-01 16 89347738 89347738 C G ANKRD11 Missense_Mutation p.D1738H 0.05 probably_damaging(0.989) TCGA-4Z-AA87-01 16 89661800 89661800 C T CPNE7 Missense_Mutation p.T518M 0.14 deleterious(0.01) possibly_damaging(0.826) TCGA-4Z-AA87-01 17 20768684 20768684 T C CCDC144NL 3'UTR 0.19 TCGA-4Z-AA87-01 17 30361933 30361933 C T LRRC37B Missense_Mutation p.L661F 0.38 deleterious(0.02) possibly_damaging(0.86) TCGA-4Z-AA87-01 17 33521267 33521267 G A SLC35G3 Silent p.S20S 0.04 TCGA-4Z-AA87-01 17 33768282 33768282 C A SLFN13 Nonsense_Mutation p.E676* 0.34 TCGA-4Z-AA87-01 17 33768312 33768312 C A SLFN13 Missense_Mutation p.V666F 0.16 deleterious(0) possibly_damaging(0.677) TCGA-4Z-AA87-01 17 34182150 34182150 G C C17orf66 Missense_Mutation p.R544G 0.04 tolerated(0.16) benign(0.062) TCGA-4Z-AA87-01 17 39280060 39280060 G C KRTAP4-12 Missense_Mutation p.C105W 0.25 deleterious(0) unknown(0) TCGA-4Z-AA87-01 17 40369467 40369467 C G STAT5B Missense_Mutation p.E395D 0.21 tolerated(0.45) benign(0.001) TCGA-4Z-AA87-01 17 61958104 61958104 G A GH2 Missense_Mutation p.P162S 0.16 tolerated_low_confidence(0.11) benign(0.013) TCGA-4Z-AA87-01 17 61958193 61958193 G C GH2 Missense_Mutation p.S132W 0.17 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA87-01 17 63133647 63133647 C G RGS9 5'UTR 0.29 TCGA-4Z-AA87-01 17 73258010 73258010 G A MRPS7 Missense_Mutation p.R10Q 0.43 tolerated_low_confidence(0.44) benign(0.009) TCGA-4Z-AA87-01 17 7579591 7579591 C T TP53 Splice_Site p.X33_splice 0.71 TCGA-4Z-AA87-01 17 76803502 76803502 G A USP36 Missense_Mutation p.P542S 0.25 tolerated(0.42) benign(0.033) TCGA-4Z-AA87-01 17 79872379 79872379 C T SIRT7 Missense_Mutation p.E203K 0.32 deleterious(0.01) possibly_damaging(0.688) TCGA-4Z-AA87-01 18 22804440 22804440 C G ZNF521 Missense_Mutation p.E1148Q 0.56 tolerated(0.1) benign(0.011) TCGA-4Z-AA87-01 18 43467788 43467788 G - EPG5 Frame_Shift_Del p.Y1679* 0.09 TCGA-4Z-AA87-01 18 43664504 43664504 C G ATP5A1 Missense_Mutation p.V516L 0.08 tolerated_low_confidence(0.14) benign(0) TCGA-4Z-AA87-01 18 46889544 46889544 C T DYM Missense_Mutation p.D161N 0.60 deleterious(0.04) benign(0.388) TCGA-4Z-AA87-01 18 46889551 46889551 C T DYM Silent p.L158L 0.58 TCGA-4Z-AA87-01 18 48248440 48248440 G A MAPK4 Missense_Mutation p.R275H 0.27 tolerated(0.12) probably_damaging(0.998) TCGA-4Z-AA87-01 18 59941275 59941275 T G KIAA1468 Silent p.S941S 0.35 TCGA-4Z-AA87-01 18 61034357 61034357 C T KDSR 5'UTR 0.50 TCGA-4Z-AA87-01 18 6997852 6997852 C T LAMA1 Silent p.L1565L 0.36 TCGA-4Z-AA87-01 18 71959158 71959158 G C CYB5A 5'UTR 0.43 TCGA-4Z-AA87-01 18 74622751 74622751 C G ZNF236 Missense_Mutation p.S928C 0.39 deleterious(0) possibly_damaging(0.572) TCGA-4Z-AA87-01 19 12383989 12383989 G C ZNF44 Missense_Mutation p.L409V 0.43 deleterious(0.02) possibly_damaging(0.734) TCGA-4Z-AA87-01 19 15224742 15224742 G C SYDE1 Missense_Mutation p.E726Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA87-01 19 17988547 17988547 G A SLC5A5 Silent p.P238P 0.52 TCGA-4Z-AA87-01 19 36501541 36501541 G A ALKBH6 Silent p.I155I 0.10 TCGA-4Z-AA87-01 19 37129831 37129831 C T ZNF461 Missense_Mutation p.M472I 0.11 deleterious(0.05) benign(0.008) TCGA-4Z-AA87-01 19 37383321 37383321 G A ZNF829 Silent p.F205F 0.79 TCGA-4Z-AA87-01 19 39010000 39010000 G C RYR1 Missense_Mutation p.E3389Q 0.10 benign(0.127) TCGA-4Z-AA87-01 19 41265447 41265447 G A SNRPA Missense_Mutation p.A120T 0.08 tolerated(0.41) benign(0.007) TCGA-4Z-AA87-01 19 41268862 41268862 G A SNRPA Silent p.P161P 0.11 TCGA-4Z-AA87-01 19 42224903 42224903 C A CEACAM5 Silent p.L611L 0.09 TCGA-4Z-AA87-01 19 44536546 44536546 A G ZNF222 Missense_Mutation p.H280R 0.03 tolerated(0.33) benign(0.367) TCGA-4Z-AA87-01 19 45871896 45871896 G A ERCC2 Missense_Mutation p.H118Y 0.52 deleterious(0.01) possibly_damaging(0.906) TCGA-4Z-AA87-01 19 463920 463920 G A ODF3L2 Missense_Mutation p.S265L 0.27 deleterious(0) possibly_damaging(0.879) TCGA-4Z-AA87-01 19 53473928 53473928 C G CTD-2620I22.1 RNA 0.11 TCGA-4Z-AA87-01 19 56552371 56552371 G C NLRP5 Missense_Mutation p.C957S 0.16 tolerated(0.89) benign(0.032) TCGA-4Z-AA87-01 19 5707774 5707774 G A LONP1 Silent p.S332S 0.27 TCGA-4Z-AA87-01 19 58423471 58423471 G C ZNF417 Nonsense_Mutation p.Y40* 0.20 TCGA-4Z-AA87-01 19 8609262 8609262 C G MYO1F Missense_Mutation p.Q481H 0.18 deleterious(0.01) benign(0.049) TCGA-4Z-AA87-01 19 9047186 9047186 G T MUC16 Missense_Mutation p.P11482Q 0.20 possibly_damaging(0.683) TCGA-4Z-AA87-01 19 9639402 9639402 C T ZNF426 Missense_Mutation p.R440Q 0.33 tolerated(0.05) benign(0.137) TCGA-4Z-AA87-01 1 114193678 114193678 G C MAGI3 Missense_Mutation p.D764H 0.40 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA87-01 1 120166626 120166626 G A ZNF697 Missense_Mutation p.R114W 0.54 deleterious(0) possibly_damaging(0.487) TCGA-4Z-AA87-01 1 150238910 150238910 C T APH1A Intron 0.35 TCGA-4Z-AA87-01 1 152281716 152281716 C T FLG Silent p.G1882G 0.13 TCGA-4Z-AA87-01 1 156498839 156498839 C T IQGAP3 Silent p.R1480R 0.61 TCGA-4Z-AA87-01 1 15870928 15870928 G A DNAJC16 Silent p.E203E 0.20 TCGA-4Z-AA87-01 1 160125918 160125918 C G ATP1A4 Missense_Mutation p.I165M 0.58 deleterious(0) probably_damaging(0.98) TCGA-4Z-AA87-01 1 16767292 16767292 C G NECAP2 Silent p.V12V 0.21 TCGA-4Z-AA87-01 1 169435106 169435106 G C SLC19A2 Missense_Mutation p.S492C 0.44 tolerated(0.07) possibly_damaging(0.471) TCGA-4Z-AA87-01 1 180772532 180772532 G A XPR1 Missense_Mutation p.A78T 0.12 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA87-01 1 180905028 180905028 G A KIAA1614 Silent p.K661K 0.26 TCGA-4Z-AA87-01 1 185151187 185151187 C T SWT1 Missense_Mutation p.S379F 0.24 deleterious(0.03) benign(0.169) TCGA-4Z-AA87-01 1 198828274 198828274 C G MIR181A1 RNA 0.40 TCGA-4Z-AA87-01 1 200972881 200972881 G A KIF21B Missense_Mutation p.P349S 0.19 deleterious(0) probably_damaging(0.996) TCGA-4Z-AA87-01 1 203465232 203465232 G C OPTC Missense_Mutation p.Q33H 0.14 deleterious(0.04) benign(0.004) TCGA-4Z-AA87-01 1 207644344 207644344 G T CR2 Missense_Mutation p.A469S 0.28 tolerated(0.06) possibly_damaging(0.852) TCGA-4Z-AA87-01 1 236730029 236730029 C T HEATR1 Missense_Mutation p.E1409K 0.42 tolerated(0.12) benign(0.008) TCGA-4Z-AA87-01 1 237756797 237756797 T C RYR2 Missense_Mutation p.F1433L 0.21 benign(0.216) TCGA-4Z-AA87-01 1 24389718 24389718 G C MYOM3 Missense_Mutation p.S1223C 0.54 deleterious(0) possibly_damaging(0.871) TCGA-4Z-AA87-01 1 248737900 248737900 G C OR2T34 Silent p.L53L 0.25 TCGA-4Z-AA87-01 1 24993329 24993329 C T SRRM1 Missense_Mutation p.S551F 0.26 benign(0.184) TCGA-4Z-AA87-01 1 26524494 26524494 C T CATSPER4 Missense_Mutation p.R202W 0.20 deleterious(0) probably_damaging(0.993) TCGA-4Z-AA87-01 1 33562402 33562402 C T ADC Missense_Mutation p.S283L 0.27 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 1 39801024 39801024 C G MACF1 Intron 0.32 TCGA-4Z-AA87-01 1 46725664 46725664 G C RAD54L Silent p.L100L 0.61 TCGA-4Z-AA87-01 1 53694617 53694617 T - MAGOH Frame_Shift_Del p.I90Sfs*40 0.25 TCGA-4Z-AA87-01 1 6279322 6279323 AG - RNF207 Frame_Shift_Del p.K590Dfs*5 0.31 TCGA-4Z-AA87-01 1 66798288 66798288 G A PDE4B Silent p.E244E 0.22 TCGA-4Z-AA87-01 1 75184908 75184908 C A CRYZ Missense_Mutation p.R138L 0.24 deleterious(0.01) benign(0.371) TCGA-4Z-AA87-01 1 89474711 89474711 C T GBP3 Silent p.V526V 0.35 TCGA-4Z-AA87-01 20 10030376 10030376 G A ANKEF1 Missense_Mutation p.G387R 0.12 tolerated(0.36) possibly_damaging(0.453) TCGA-4Z-AA87-01 20 21492970 21492970 G A NKX2-2 Missense_Mutation p.A138V 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-4Z-AA87-01 20 30585204 30585204 C T XKR7 Nonsense_Mutation p.Q562* 0.10 TCGA-4Z-AA87-01 20 33862349 33862349 C T MMP24 Silent p.F625F 0.33 TCGA-4Z-AA87-01 20 37524319 37524319 G C PPP1R16B Missense_Mutation p.G145R 0.15 deleterious(0.02) probably_damaging(0.934) TCGA-4Z-AA87-01 20 37580732 37580732 C T FAM83D Nonsense_Mutation p.Q473* 0.29 TCGA-4Z-AA87-01 20 47276474 47276474 G C PREX1 Missense_Mutation p.L622V 0.15 tolerated(0.21) benign(0.005) TCGA-4Z-AA87-01 20 57611559 57611559 C T SLMO2 Silent p.L144L 0.47 TCGA-4Z-AA87-01 20 58533729 58533729 T A CDH26 5'UTR 0.16 TCGA-4Z-AA87-01 20 61143577 61143577 G A C20orf166 5'Flank 0.17 TCGA-4Z-AA87-01 20 61386081 61386081 G A NTSR1 Silent p.S253S 0.56 TCGA-4Z-AA87-01 21 31803072 31803072 G A KRTAP13-4 Missense_Mutation p.C160Y 0.10 deleterious(0) probably_damaging(0.994) TCGA-4Z-AA87-01 21 31812804 31812804 G A KRTAP15-1 Silent p.E53E 0.16 TCGA-4Z-AA87-01 21 37747543 37747543 T C MORC3 Silent p.D923D 0.07 TCGA-4Z-AA87-01 21 41143094 41143094 G A IGSF5 Missense_Mutation p.A224T 0.16 tolerated(0.14) probably_damaging(0.912) TCGA-4Z-AA87-01 21 43414218 43414218 C G ZBTB21 Splice_Site 0.66 TCGA-4Z-AA87-01 21 46057503 46057503 T C KRTAP10-10 Missense_Mutation p.C57R 0.23 deleterious(0) possibly_damaging(0.831) TCGA-4Z-AA87-01 21 46685595 46685595 C A POFUT2 Intron 0.19 TCGA-4Z-AA87-01 21 46686076 46686076 C T POFUT2 Intron 0.18 TCGA-4Z-AA87-01 22 21354421 21354421 G A THAP7 Silent p.I226I 0.33 TCGA-4Z-AA87-01 22 37414298 37414298 C T TST Missense_Mutation p.R159H 0.25 tolerated(0.17) benign(0) TCGA-4Z-AA87-01 22 46722393 46722393 G A GTSE1 Silent p.L522L 0.56 TCGA-4Z-AA87-01 22 46929858 46929859 AT - CELSR1 Frame_Shift_Del p.Y1070Cfs*26 0.11 TCGA-4Z-AA87-01 2 133541104 133541104 C T NCKAP5 Missense_Mutation p.D1094N 0.31 tolerated(0.1) benign(0.066) TCGA-4Z-AA87-01 2 161025759 161025759 G C ITGB6 Missense_Mutation p.I327M 0.49 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 2 170019075 170019075 C T LRP2 Missense_Mutation p.E3932K 0.13 probably_damaging(0.991) TCGA-4Z-AA87-01 2 170367360 170367360 G C KLHL41 Missense_Mutation p.E358Q 0.51 tolerated(0.25) benign(0.099) TCGA-4Z-AA87-01 2 171916477 171916477 G A TLK1 Intron 0.43 TCGA-4Z-AA87-01 2 197763065 197763065 G C PGAP1 Nonsense_Mutation p.S279* 0.34 TCGA-4Z-AA87-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.27 deleterious(0.04) benign(0.233) TCGA-4Z-AA87-01 2 226446847 226446847 C T NYAP2 Silent p.P238P 0.29 TCGA-4Z-AA87-01 2 227729646 227729646 G T RHBDD1 Missense_Mutation p.W79C 0.32 deleterious(0) probably_damaging(0.951) TCGA-4Z-AA87-01 2 239167177 239167177 C T PER2 Missense_Mutation p.C579Y 0.17 tolerated(1) possibly_damaging(0.736) TCGA-4Z-AA87-01 2 272114 272114 G A ACP1 Intron 0.52 TCGA-4Z-AA87-01 2 27600966 27600966 T C ZNF513 Missense_Mutation p.K358E 0.19 deleterious(0) benign(0.292) TCGA-4Z-AA87-01 2 36623930 36623930 G A CRIM1 Missense_Mutation p.E169K 0.28 tolerated(0.15) probably_damaging(0.914) TCGA-4Z-AA87-01 2 38791320 38791320 C G HNRNPLL 3'UTR 0.20 TCGA-4Z-AA87-01 2 38791380 38791380 C G HNRNPLL Splice_Site p.X520_splice 0.21 TCGA-4Z-AA87-01 2 55464537 55464537 G C MTIF2 Missense_Mutation p.S633C 0.18 tolerated(0.22) benign(0.004) TCGA-4Z-AA87-01 2 61456758 61456758 C T USP34 Missense_Mutation p.R2375H 0.22 deleterious(0.01) possibly_damaging(0.84) TCGA-4Z-AA87-01 2 70064691 70064691 G C GMCL1 Missense_Mutation p.K91N 0.62 deleterious(0) benign(0.172) TCGA-4Z-AA87-01 2 70905850 70905850 G A ADD2 Nonsense_Mutation p.R457* 0.72 TCGA-4Z-AA87-01 2 71351592 71351592 G C MCEE Missense_Mutation p.S41C 0.79 tolerated(0.26) benign(0.002) TCGA-4Z-AA87-01 2 73678167 73678167 G A ALMS1 Missense_Mutation p.A1504T 0.71 benign(0.032) TCGA-4Z-AA87-01 2 96994063 96994063 G A ITPRIPL1 3'UTR 0.38 TCGA-4Z-AA87-01 2 99901258 99901258 G A LYG1 Missense_Mutation p.S120F 0.41 deleterious(0.03) benign(0.293) TCGA-4Z-AA87-01 3 121100143 121100143 A C STXBP5L Missense_Mutation p.N808T 0.22 tolerated(0.6) benign(0) TCGA-4Z-AA87-01 3 124732495 124732495 G A HEG1 Missense_Mutation p.P643L 0.31 tolerated(0.12) benign(0.021) TCGA-4Z-AA87-01 3 124748266 124748266 T A HEG1 Missense_Mutation p.Q128L 0.13 deleterious_low_confidence(0) benign(0.203) TCGA-4Z-AA87-01 3 126741616 126741616 G T PLXNA1 Missense_Mutation p.K1439N 0.49 deleterious(0) benign(0.243) TCGA-4Z-AA87-01 3 128618238 128618238 G C ACAD9 Missense_Mutation p.E248Q 0.23 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA87-01 3 130360553 130360553 C T COL6A6 Missense_Mutation p.R1717C 0.53 deleterious(0) possibly_damaging(0.847) TCGA-4Z-AA87-01 3 169482441 169482441 G A ACTRT3 3'Flank 0.39 TCGA-4Z-AA87-01 3 178937518 178937518 G C PIK3CA Missense_Mutation p.V636L 0.12 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 3 186790697 186790697 G T ST6GAL1 Missense_Mutation p.V256L 0.22 benign(0.02) TCGA-4Z-AA87-01 3 195063206 195063206 C T ACAP2 Silent p.V174V 0.49 TCGA-4Z-AA87-01 3 195778965 195778965 C T TFRC Missense_Mutation p.A711T 0.15 deleterious(0) probably_damaging(0.99) TCGA-4Z-AA87-01 3 196230049 196230050 AT - RNF168 5'UTR 0.13 TCGA-4Z-AA87-01 3 20215936 20215936 C T SGOL1 Missense_Mutation p.E363K 0.62 tolerated(0.42) benign(0.007) TCGA-4Z-AA87-01 3 3097891 3097891 G C CNTN4 Missense_Mutation p.R1023T 0.33 deleterious(0.03) unknown(0) TCGA-4Z-AA87-01 3 38414169 38414169 C G XYLB Silent p.V263V 0.34 TCGA-4Z-AA87-01 3 3888262 3888262 C T LRRN1 Missense_Mutation p.A646V 0.12 tolerated(0.14) benign(0.003) TCGA-4Z-AA87-01 3 42956049 42956049 G C ZNF662 Missense_Mutation p.E188Q 0.41 tolerated(0.12) possibly_damaging(0.801) TCGA-4Z-AA87-01 3 46713517 46713517 C T ALS2CL Silent p.T847T 0.35 TCGA-4Z-AA87-01 3 4716886 4716886 G A ITPR1 Silent p.A896A 0.07 TCGA-4Z-AA87-01 3 49051434 49051434 A G WDR6 Missense_Mutation p.S853G 0.15 tolerated(0.55) benign(0) TCGA-4Z-AA87-01 3 52442080 52442080 G C BAP1 Missense_Mutation p.S90C 0.45 deleterious(0) probably_damaging(0.968) TCGA-4Z-AA87-01 3 56789118 56789118 C G ARHGEF3 Missense_Mutation p.R121T 0.52 deleterious(0.01) possibly_damaging(0.688) TCGA-4Z-AA87-01 3 69093692 69093692 G C TMF1 Missense_Mutation p.L468V 0.30 tolerated(1) benign(0.001) TCGA-4Z-AA87-01 3 8809244 8809244 G A OXTR Silent p.I210I 0.22 TCGA-4Z-AA87-01 3 9957397 9957397 G A IL17RE Nonsense_Mutation p.W637* 0.32 TCGA-4Z-AA87-01 4 100542245 100542245 C T MTTP Silent p.I790I 0.22 TCGA-4Z-AA87-01 4 152069243 152069243 G C SH3D19 Missense_Mutation p.S358C 0.43 deleterious(0) possibly_damaging(0.897) TCGA-4Z-AA87-01 4 156632274 156632274 T G GUCY1A3 Missense_Mutation p.N319K 0.19 tolerated(1) benign(0.004) TCGA-4Z-AA87-01 4 159881465 159881465 G A C4orf45 Missense_Mutation p.S110L 0.16 tolerated(0.08) benign(0.004) TCGA-4Z-AA87-01 4 169812207 169812207 C T PALLD Missense_Mutation p.P700L 0.10 deleterious(0.04) probably_damaging(0.951) TCGA-4Z-AA87-01 4 187004339 187004339 C T TLR3 Missense_Mutation p.S500L 0.40 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA87-01 4 265774 265774 G A ZNF732 Missense_Mutation p.S291L 0.28 deleterious(0.02) possibly_damaging(0.879) TCGA-4Z-AA87-01 4 2896391 2896391 C G ADD1 Missense_Mutation p.S225C 0.47 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA87-01 4 39304383 39304383 G C RFC1 Missense_Mutation p.Q773E 0.23 deleterious(0.01) benign(0.217) TCGA-4Z-AA87-01 4 39304431 39304431 G A RFC1 Missense_Mutation p.H757Y 0.21 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA87-01 4 62778440 62778440 C T LPHN3 Nonsense_Mutation p.Q625* 0.58 TCGA-4Z-AA87-01 4 65194275 65194275 C A TECRL Splice_Site p.X96_splice 0.23 TCGA-4Z-AA87-01 4 71347365 71347365 G C MUC7 Missense_Mutation p.E302Q 0.49 tolerated(0.1) unknown(0) TCGA-4Z-AA87-01 4 76582810 76582810 G A G3BP2 Silent p.V94V 0.40 TCGA-4Z-AA87-01 4 77228025 77228025 G A FAM47E-STBD1 Missense_Mutation p.D35N 0.32 tolerated(0.37) benign(0.014) TCGA-4Z-AA87-01 4 88048267 88048267 C T AFF1 Silent p.D967D 0.25 TCGA-4Z-AA87-01 4 88583927 88583927 G A DMP1 Missense_Mutation p.V333I 0.38 tolerated(0.23) benign(0.04) TCGA-4Z-AA87-01 5 121187858 121187858 G A FTMT Missense_Mutation p.R67Q 0.50 tolerated(1) benign(0) TCGA-4Z-AA87-01 5 139876704 139876704 C T ANKHD1 Missense_Mutation p.L949F 0.42 unknown(0) TCGA-4Z-AA87-01 5 140501700 140501700 C A PCDHB4 Missense_Mutation p.S40R 0.30 tolerated_low_confidence(0.47) benign(0.169) TCGA-4Z-AA87-01 5 140811700 140811700 C T PCDHGA12 Silent p.S458S 0.21 TCGA-4Z-AA87-01 5 149602240 149602240 G A CAMK2A 3'Flank 0.38 TCGA-4Z-AA87-01 5 171509467 171509467 G A STK10 Missense_Mutation p.R618C 0.43 deleterious(0) probably_damaging(0.93) TCGA-4Z-AA87-01 5 1880923 1880923 G A IRX4 Missense_Mutation p.S108L 0.20 deleterious(0.01) benign(0.003) TCGA-4Z-AA87-01 5 33643548 33643548 C A ADAMTS12 Missense_Mutation p.V503L 0.23 deleterious(0) probably_damaging(0.959) TCGA-4Z-AA87-01 5 52285231 52285231 C A ITGA2 5'UTR 0.27 TCGA-4Z-AA87-01 5 74685495 74685495 C T COL4A3BP Silent p.Q530Q 0.20 TCGA-4Z-AA87-01 5 77406046 77406046 G - AP3B1 Frame_Shift_Del p.R795Efs*25 0.24 TCGA-4Z-AA87-01 5 82500669 82500669 G A XRCC4 Missense_Mutation p.R225Q 0.13 tolerated(0.15) benign(0.003) TCGA-4Z-AA87-01 5 96127784 96127784 C G ERAP1 Missense_Mutation p.D434H 0.23 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA87-01 6 116966910 116966910 T A ZUFSP Silent p.A552A 0.21 TCGA-4Z-AA87-01 6 125139570 125139570 A C NKAIN2 Missense_Mutation p.Q191H 0.23 tolerated(1) probably_damaging(0.995) TCGA-4Z-AA87-01 6 135308785 135308785 G A HBS1L Nonsense_Mutation p.Q410* 0.07 TCGA-4Z-AA87-01 6 146269463 146269463 G A SHPRH Nonsense_Mutation p.R336* 0.25 TCGA-4Z-AA87-01 6 15523372 15523372 G C DTNBP1 Missense_Mutation p.S297C 0.19 deleterious(0.01) possibly_damaging(0.868) TCGA-4Z-AA87-01 6 159185648 159185648 C G SYTL3 3'UTR 0.48 TCGA-4Z-AA87-01 6 161071421 161071421 G A LPA Missense_Mutation p.S53L 0.20 tolerated(0.23) probably_damaging(0.997) TCGA-4Z-AA87-01 6 170627293 170627293 C T FAM120B Missense_Mutation p.S272L 0.15 deleterious(0) benign(0.265) TCGA-4Z-AA87-01 6 26156559 26156569 AGTCCCGGCCA - HIST1H1E 5'UTR 0.10 TCGA-4Z-AA87-01 6 26406292 26406292 G C BTN3A1 Missense_Mutation p.D81H 0.35 tolerated(0.22) benign(0.033) TCGA-4Z-AA87-01 6 33163152 33163152 G C RXRB Missense_Mutation p.L450V 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-4Z-AA87-01 6 4087897 4087897 C T C6orf201 Silent p.L8L 0.17 TCGA-4Z-AA87-01 6 4125373 4125373 C G C6orf201 Intron 0.26 TCGA-4Z-AA87-01 6 42641914 42641914 G A UBR2 Missense_Mutation p.D1412N 0.41 deleterious(0) probably_damaging(0.912) TCGA-4Z-AA87-01 7 104752477 104752477 C T KMT2E Missense_Mutation p.S1425F 0.20 deleterious_low_confidence(0) benign(0.193) TCGA-4Z-AA87-01 7 113558592 113558592 C G PPP1R3A Missense_Mutation p.E154Q 0.23 tolerated(0.06) possibly_damaging(0.596) TCGA-4Z-AA87-01 7 128640615 128640615 C T TNPO3 Silent p.L293L 0.32 TCGA-4Z-AA87-01 7 131148049 131148049 C T MKLN1 Silent p.L533L 0.35 TCGA-4Z-AA87-01 7 133812133 133812133 G C LRGUK Missense_Mutation p.E5Q 0.26 tolerated_low_confidence(0.36) unknown(0) TCGA-4Z-AA87-01 7 134653125 134653125 G A CALD1 3'UTR 0.33 TCGA-4Z-AA87-01 7 138764623 138764623 G C ZC3HAV1 Nonsense_Mutation p.S355* 0.27 TCGA-4Z-AA87-01 7 150069065 150069065 C A REPIN1 Missense_Mutation p.F302L 0.43 deleterious(0) probably_damaging(0.989) TCGA-4Z-AA87-01 7 33545249 33545249 C A BBS9 Missense_Mutation p.Q764K 0.24 tolerated(0.88) benign(0.053) TCGA-4Z-AA87-01 7 44924166 44924166 G C PURB Missense_Mutation p.P261R 0.39 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 7 5353113 5353114 - T TNRC18 Frame_Shift_Ins p.T2470Nfs*9 0.42 TCGA-4Z-AA87-01 7 63981739 63981739 C T ZNF680 Missense_Mutation p.D465N 0.34 deleterious(0.03) benign(0.015) TCGA-4Z-AA87-01 7 6456353 6456353 G A DAGLB Silent p.L444L 0.20 TCGA-4Z-AA87-01 7 82387994 82387994 T C PCLO Missense_Mutation p.K5109R 0.19 unknown(0) TCGA-4Z-AA87-01 7 82544696 82544696 T G PCLO Missense_Mutation p.K4202N 0.37 unknown(0) TCGA-4Z-AA87-01 7 91726209 91726209 G A AKAP9 Missense_Mutation p.M3312I 0.34 benign(0.028) TCGA-4Z-AA87-01 7 92208708 92208708 C T FAM133B Missense_Mutation p.E42K 0.47 deleterious(0) possibly_damaging(0.801) TCGA-4Z-AA87-01 7 99673192 99673192 C T ZNF3 Silent p.A39A 0.17 TCGA-4Z-AA87-01 8 101092411 101092411 A G RGS22 Missense_Mutation p.M97T 0.07 tolerated(0.56) benign(0.035) TCGA-4Z-AA87-01 8 103359184 103359184 G C UBR5 Missense_Mutation p.Q175E 0.16 tolerated(0.21) benign(0.334) TCGA-4Z-AA87-01 8 10467432 10467432 C A RP1L1 Missense_Mutation p.E1392D 0.28 unknown(0) TCGA-4Z-AA87-01 8 105263382 105263382 A C RIMS2 Missense_Mutation p.K1274N 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-4Z-AA87-01 8 144557733 144557733 G A ZC3H3 Missense_Mutation p.R580C 0.45 deleterious(0.03) benign(0.346) TCGA-4Z-AA87-01 8 144946932 144946932 C T EPPK1 Missense_Mutation p.A164T 0.52 benign(0.019) TCGA-4Z-AA87-01 8 146015295 146015295 G T RPL8 Missense_Mutation p.S223Y 0.22 deleterious(0) probably_damaging(0.982) TCGA-4Z-AA87-01 8 2806893 2806893 C G CSMD1 Missense_Mutation p.E3444Q 0.36 possibly_damaging(0.72) TCGA-4Z-AA87-01 8 30702144 30702144 C G TEX15 Missense_Mutation p.V1464L 0.16 tolerated(0.34) benign(0.075) TCGA-4Z-AA87-01 8 35402018 35402018 G T UNC5D Intron 0.12 TCGA-4Z-AA87-01 8 57876521 57876521 C A IMPAD1 Missense_Mutation p.G304V 0.47 deleterious(0) probably_damaging(1) TCGA-4Z-AA87-01 8 81888711 81888711 C T PAG1 3'UTR 0.39 TCGA-4Z-AA87-01 8 86126847 86126847 C G C8orf59 Missense_Mutation p.R82P 0.10 tolerated(0.38) benign(0.095) TCGA-4Z-AA87-01 8 86245787 86245787 A T CA1 Silent p.A139A 0.18 TCGA-4Z-AA87-01 9 113547876 113547876 C T MUSK Silent p.P552P 0.19 TCGA-4Z-AA87-01 9 116022660 116022660 C A SLC31A1 Silent p.L160L 0.19 TCGA-4Z-AA87-01 9 131345392 131345392 C T SPTAN1 Nonsense_Mutation p.Q615* 0.80 TCGA-4Z-AA87-01 9 5810173 5810173 G A ERMP1 Silent p.F462F 0.47 TCGA-4Z-AA87-01 9 6602111 6602111 G A GLDC Nonsense_Mutation p.Q385* 0.43 TCGA-4Z-AA87-01 9 73225652 73225652 C T TRPM3 Missense_Mutation p.R835Q 0.32 tolerated(0.35) benign(0.177) TCGA-4Z-AA87-01 9 96415636 96415636 C T PHF2 Missense_Mutation p.H260Y 0.22 deleterious(0) unknown(0) TCGA-4Z-AA87-01 X 100417903 100417903 C T CENPI Missense_Mutation p.H740Y 0.75 deleterious(0.02) benign(0.133) TCGA-4Z-AA87-01 X 100871235 100871235 C A ARMCX6 Missense_Mutation p.D126Y 0.08 deleterious(0.04) possibly_damaging(0.721) TCGA-4Z-AA87-01 X 107408602 107408602 C T COL4A6 Missense_Mutation p.R1270Q 0.65 possibly_damaging(0.49) TCGA-4Z-AA87-01 X 129270626 129270626 C T AIFM1 Missense_Mutation p.G386S 0.16 deleterious(0) probably_damaging(0.967) TCGA-4Z-AA87-01 X 142717989 142717989 G T SLITRK4 Silent p.I312I 0.35 TCGA-4Z-AA87-01 X 19377094 19377094 C G PDHA1 Silent p.L358L 0.70 TCGA-4Z-AA87-01 X 47092405 47092405 C T USP11 Missense_Mutation p.S31L 0.72 deleterious_low_confidence(0.01) benign(0.008) TCGA-4Z-AA87-01 X 48214673 48214673 A G SSX3 Silent p.D4D 0.06 TCGA-4Z-AA87-01 X 70643044 70643044 C A TAF1 Missense_Mutation p.F1530L 0.76 deleterious(0) probably_damaging(0.991) TCGA-4Z-AA87-01 X 9622274 9622274 C G TBL1X Missense_Mutation p.I41M 0.78 deleterious_low_confidence(0.04) benign(0) TCGA-4Z-AA89-01 10 101563938 101563938 G C ABCC2 Missense_Mutation p.E458Q 0.18 tolerated(0.4) probably_damaging(0.997) TCGA-4Z-AA89-01 10 61831602 61831602 C G ANK3 Missense_Mutation p.E3013Q 0.17 benign(0.001) TCGA-4Z-AA89-01 10 63212714 63212714 G A TMEM26 Silent p.L42L 0.22 TCGA-4Z-AA89-01 10 79743752 79743752 C A POLR3A Nonsense_Mutation p.E1119* 0.21 TCGA-4Z-AA89-01 10 94834237 94834237 G A CYP26A1 Missense_Mutation p.G121E 0.07 deleterious(0) probably_damaging(1) TCGA-4Z-AA89-01 11 102576410 102576410 T A MMP27 Silent p.I12I 0.45 TCGA-4Z-AA89-01 11 11963917 11963917 G A USP47 Silent p.Q715Q 0.12 TCGA-4Z-AA89-01 11 15243191 15243191 G A INSC Missense_Mutation p.V377I 0.45 tolerated(1) benign(0.001) TCGA-4Z-AA89-01 11 55406010 55406010 C T OR4P4 Silent p.F59F 0.14 TCGA-4Z-AA89-01 11 61539053 61539053 G C MYRF Missense_Mutation p.M274I 0.23 tolerated(0.4) benign(0.003) TCGA-4Z-AA89-01 11 65384336 65384336 C T PCNXL3 Silent p.L65L 0.08 TCGA-4Z-AA89-01 11 70009464 70009464 C T ANO1 Intron 0.16 TCGA-4Z-AA89-01 11 70049672 70049672 T C FADD Missense_Mutation p.L36P 0.56 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA89-01 11 76072059 76072059 C T PRKRIR Missense_Mutation p.D87N 0.05 deleterious(0.01) benign(0.424) TCGA-4Z-AA89-01 11 76072096 76072096 C T PRKRIR Silent p.R74R 0.08 TCGA-4Z-AA89-01 11 7725246 7725246 T A OVCH2 Nonsense_Mutation p.R97* 0.30 TCGA-4Z-AA89-01 12 10226003 10226003 G A CLEC1A Missense_Mutation p.A184V 0.04 tolerated(1) benign(0.019) TCGA-4Z-AA89-01 12 122618268 122618268 C G MLXIP Missense_Mutation p.S489C 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-4Z-AA89-01 12 122966628 122966628 T A ZCCHC8 Missense_Mutation p.N247Y 0.35 deleterious(0) probably_damaging(0.979) TCGA-4Z-AA89-01 12 12300302 12300302 G C LRP6 Nonsense_Mutation p.S1132* 0.11 TCGA-4Z-AA89-01 12 130832682 130832682 C T PIWIL1 Nonsense_Mutation p.R230* 0.15 TCGA-4Z-AA89-01 12 14827586 14827586 G C GUCY2C Missense_Mutation p.H353D 0.13 tolerated(0.32) benign(0.002) TCGA-4Z-AA89-01 12 4479899 4479899 G A FGF23 Silent p.N122N 0.42 TCGA-4Z-AA89-01 12 48145564 48145564 G T RAPGEF3 Missense_Mutation p.L108M 0.11 tolerated(0.36) possibly_damaging(0.78) TCGA-4Z-AA89-01 12 53237935 53237935 G C KRT78 Missense_Mutation p.S330C 0.11 deleterious(0) probably_damaging(0.926) TCGA-4Z-AA89-01 12 54790078 54790078 C G ITGA5 Nonstop_Mutation p.*1050Sext*10 0.18 TCGA-4Z-AA89-01 12 55714585 55714585 G C OR6C1 Missense_Mutation p.E68Q 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4Z-AA89-01 12 55794610 55794610 T - OR6C65 Frame_Shift_Del p.L102* 0.34 TCGA-4Z-AA89-01 12 6442266 6442266 G C TNFRSF1A Missense_Mutation p.L174V 0.10 deleterious(0.05) benign(0.122) TCGA-4Z-AA89-01 12 65857056 65857056 G A MSRB3 Missense_Mutation p.G178D 0.16 tolerated_low_confidence(0.11) benign(0.003) TCGA-4Z-AA89-01 12 65857112 65857112 G C MSRB3 3'UTR 0.15 TCGA-4Z-AA89-01 12 6623646 6623646 C G NCAPD2 Missense_Mutation p.I244M 0.44 deleterious(0) possibly_damaging(0.472) TCGA-4Z-AA89-01 13 113803524 113803524 G A F10 Missense_Mutation p.R387H 0.06 deleterious(0) probably_damaging(1) TCGA-4Z-AA89-01 13 42265515 42265515 G A VWA8 Silent p.L1269L 0.19 TCGA-4Z-AA89-01 13 77739431 77739431 C T MYCBP2 Missense_Mutation p.E2108K 0.12 probably_damaging(0.968) TCGA-4Z-AA89-01 14 33165194 33165194 A T AKAP6 Splice_Site p.X960_splice 0.41 TCGA-4Z-AA89-01 14 71197331 71197331 C G MAP3K9 Missense_Mutation p.E1041D 0.08 tolerated(0.58) benign(0.023) TCGA-4Z-AA89-01 15 100801782 100801782 C T ADAMTS17 Silent p.Q311Q 0.27 TCGA-4Z-AA89-01 15 22382613 22382613 C T OR4N4 Silent p.F47F 0.11 TCGA-4Z-AA89-01 15 33359047 33359047 G C FMN1 Missense_Mutation p.L347V 0.13 deleterious(0.01) unknown(0) TCGA-4Z-AA89-01 15 45412485 45412485 C T DUOXA1 Silent p.V196V 0.16 TCGA-4Z-AA89-01 15 65621842 65621842 C T IGDCC3 Silent p.A697A 0.25 TCGA-4Z-AA89-01 15 73862604 73862604 C T NPTN Missense_Mutation p.R334Q 0.07 deleterious(0) possibly_damaging(0.692) TCGA-4Z-AA89-01 15 92987900 92987900 G C ST8SIA2 Missense_Mutation p.D195H 0.15 probably_damaging(0.989) TCGA-4Z-AA89-01 16 2233845 2233845 C T CASKIN1 Missense_Mutation p.R505H 0.07 probably_damaging(0.997) TCGA-4Z-AA89-01 16 25251866 25251866 C A ZKSCAN2 Silent p.P725P 0.39 TCGA-4Z-AA89-01 16 28989300 28989300 C G SPNS1 Missense_Mutation p.L127V 0.42 deleterious(0.04) benign(0.088) TCGA-4Z-AA89-01 16 30096296 30096296 C A PPP4C Silent p.L279L 0.22 TCGA-4Z-AA89-01 16 4382239 4382239 G A GLIS2 5'UTR 0.21 TCGA-4Z-AA89-01 16 5127977 5127977 C G ALG1 Silent p.L233L 0.25 TCGA-4Z-AA89-01 16 71488050 71488050 C A ZNF23 5'UTR 0.38 TCGA-4Z-AA89-01 16 81078153 81078153 C T ATMIN Nonsense_Mutation p.Q684* 0.45 TCGA-4Z-AA89-01 16 81078378 81078378 C G ATMIN Missense_Mutation p.Q759E 0.34 tolerated(0.07) benign(0.008) TCGA-4Z-AA89-01 17 17697755 17697755 C G RAI1 Nonsense_Mutation p.S498* 0.12 TCGA-4Z-AA89-01 17 28511683 28511683 C G NSRP1 Nonsense_Mutation p.S223* 0.34 TCGA-4Z-AA89-01 17 28754486 28754486 C T CPD Nonsense_Mutation p.Q643* 0.11 TCGA-4Z-AA89-01 17 36485968 36485968 T A GPR179 Missense_Mutation p.S1162C 0.44 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA89-01 17 37885811 37885811 C G MIEN1 Missense_Mutation p.K104N 0.15 deleterious(0.01) possibly_damaging(0.518) TCGA-4Z-AA89-01 17 37885839 37885839 C G MIEN1 Missense_Mutation p.R95T 0.16 tolerated(0.15) benign(0.055) TCGA-4Z-AA89-01 17 37901234 37901234 C T GRB7 Silent p.F359F 0.27 TCGA-4Z-AA89-01 17 39502859 39502859 T A KRT33A Missense_Mutation p.Q313L 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-4Z-AA89-01 17 41246791 41246791 C T BRCA1 Missense_Mutation p.A253T 0.38 deleterious(0.02) possibly_damaging(0.672) TCGA-4Z-AA89-01 17 57148305 57148305 G A TRIM37 Missense_Mutation p.R230W 0.06 deleterious(0.02) possibly_damaging(0.821) TCGA-4Z-AA89-01 17 62796796 62796796 C G PLEKHM1P RNA 0.20 TCGA-4Z-AA89-01 17 7126021 7126021 C G ACADVL Nonsense_Mutation p.S328* 0.11 TCGA-4Z-AA89-01 17 8404169 8404169 G A MYH10 Missense_Mutation p.S1240L 0.38 probably_damaging(0.995) TCGA-4Z-AA89-01 18 21407359 21407359 G A LAMA3 Silent p.G917G 0.13 TCGA-4Z-AA89-01 18 23724622 23724622 G C PSMA8 Missense_Mutation p.D68H 0.11 deleterious(0) probably_damaging(1) TCGA-4Z-AA89-01 18 24497142 24497142 C G CHST9 Missense_Mutation p.G138A 0.17 tolerated(0.78) benign(0.05) TCGA-4Z-AA89-01 18 2891229 2891229 C T EMILIN2 Silent p.L368L 0.43 TCGA-4Z-AA89-01 18 44627329 44627329 C G KATNAL2 Missense_Mutation p.L452V 0.26 tolerated(0.07) possibly_damaging(0.87) TCGA-4Z-AA89-01 18 47796377 47796377 G A MBD1 Intron 0.08 TCGA-4Z-AA89-01 18 48510681 48510681 C T ELAC1 Missense_Mutation p.P125S 0.55 tolerated(0.12) benign(0.3) TCGA-4Z-AA89-01 18 6942032 6942032 C A LAMA1 3'UTR 0.21 TCGA-4Z-AA89-01 19 14629110 14629110 C T DNAJB1 Missense_Mutation p.E18K 0.40 deleterious(0.04) possibly_damaging(0.686) TCGA-4Z-AA89-01 19 14910903 14910903 C A OR7C1 Nonsense_Mutation p.G16* 0.34 TCGA-4Z-AA89-01 19 19115047 19115047 G A SUGP2 Silent p.I953I 0.10 TCGA-4Z-AA89-01 19 37678028 37678028 C T ZNF585B Silent p.K137K 0.10 TCGA-4Z-AA89-01 19 4110556 4110556 T C MAP2K2 Missense_Mutation p.Y134C 0.17 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA89-01 19 49674873 49674873 C T TRPM4 Silent p.L299L 0.28 TCGA-4Z-AA89-01 19 51323215 51323215 C T KLK1 Silent p.Q191Q 0.15 TCGA-4Z-AA89-01 19 8160256 8160256 C T FBN3 Intron 0.12 TCGA-4Z-AA89-01 19 9061902 9061902 G A MUC16 Missense_Mutation p.S8515L 0.26 unknown(0) TCGA-4Z-AA89-01 1 12819368 12819368 G A C1orf158 Nonsense_Mutation p.W117* 0.46 TCGA-4Z-AA89-01 1 154988201 154988201 C - ZBTB7B Frame_Shift_Del p.H390Mfs*10 0.28 TCGA-4Z-AA89-01 1 16268613 16268613 G C ZBTB17 Missense_Mutation p.Q755E 0.07 deleterious(0) possibly_damaging(0.68) TCGA-4Z-AA89-01 1 213341296 213341296 C G RPS6KC1 Missense_Mutation p.Q311E 0.26 tolerated(0.22) benign(0.103) TCGA-4Z-AA89-01 1 231376885 231376885 C T C1orf131 Translation_Start_Site p.M1? 0.24 tolerated_low_confidence(0.13) benign(0.004) TCGA-4Z-AA89-01 1 237838083 237838083 T A RYR2 Missense_Mutation p.Y2923N 0.31 probably_damaging(0.949) TCGA-4Z-AA89-01 1 247151032 247151032 T A ZNF695 Missense_Mutation p.H262L 0.38 deleterious(0) benign(0.04) TCGA-4Z-AA89-01 1 29586013 29586013 G C PTPRU Missense_Mutation p.Q204H 0.14 deleterious(0) possibly_damaging(0.818) TCGA-4Z-AA89-01 1 35478084 35478084 G C ZMYM6 Missense_Mutation p.F298L 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-4Z-AA89-01 1 3662658 3662658 G A TP73-AS1 RNA 0.07 TCGA-4Z-AA89-01 1 3699310 3699310 T G LRRC47 Missense_Mutation p.D443A 0.06 deleterious(0.01) possibly_damaging(0.549) TCGA-4Z-AA89-01 1 78097617 78097617 G C ZZZ3 Missense_Mutation p.Q475E 0.28 tolerated(1) benign(0.011) TCGA-4Z-AA89-01 1 98205966 98205966 G A DPYD Silent p.I101I 0.35 TCGA-4Z-AA89-01 20 10629302 10629302 G T JAG1 Silent p.I488I 0.37 TCGA-4Z-AA89-01 20 23424606 23424606 G C CSTL1 Missense_Mutation p.K85N 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-4Z-AA89-01 20 2638639 2638639 G C NOP56 Missense_Mutation p.G495A 0.17 tolerated(0.37) possibly_damaging(0.794) TCGA-4Z-AA89-01 20 2638826 2638826 G C NOP56 Missense_Mutation p.K557N 0.28 deleterious_low_confidence(0) benign(0.403) TCGA-4Z-AA89-01 20 3846494 3846494 C T MAVS Silent p.I441I 0.10 TCGA-4Z-AA89-01 20 40980878 40980878 C T PTPRT Silent p.S536S 0.47 TCGA-4Z-AA89-01 20 47770604 47770604 G C STAU1 Missense_Mutation p.S70R 0.07 deleterious(0.01) benign(0.005) TCGA-4Z-AA89-01 20 57876522 57876522 C G EDN3 Missense_Mutation p.P37R 0.36 tolerated(0.1) benign(0.132) TCGA-4Z-AA89-01 21 43714663 43714663 C T ABCG1 Silent p.F567F 0.11 TCGA-4Z-AA89-01 22 22786533 22786533 C T IGLV1-36 Missense_Mutation p.S28L 0.07 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-4Z-AA89-01 22 23603181 23603181 C G BCR Silent p.V502V 0.05 TCGA-4Z-AA89-01 22 36920720 36920720 C T EIF3D Missense_Mutation p.E77K 0.11 deleterious(0.01) possibly_damaging(0.58) TCGA-4Z-AA89-01 22 39715088 39715088 T A RPL3 Intron 0.48 TCGA-4Z-AA89-01 2 103006635 103006635 C T IL18R1 Silent p.L357L 0.09 TCGA-4Z-AA89-01 2 163204191 163204191 C A GCA Nonsense_Mutation p.S44* 0.32 TCGA-4Z-AA89-01 2 169994004 169994004 C G LRP2 Splice_Site p.X4507_splice 0.06 TCGA-4Z-AA89-01 2 173881124 173881124 C G RAPGEF4 Silent p.L619L 0.11 TCGA-4Z-AA89-01 2 175338037 175338037 C T GPR155 Silent p.V172V 0.14 TCGA-4Z-AA89-01 2 242007233 242007233 C A SNED1 Nonsense_Mutation p.S1022* 0.20 TCGA-4Z-AA89-01 2 27730583 27730583 G C GCKR Silent p.L393L 0.27 TCGA-4Z-AA89-01 2 28814607 28814607 C T PLB1 Missense_Mutation p.S723F 0.19 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA89-01 2 74717816 74717816 G T TTC31 Nonsense_Mutation p.E166* 0.16 TCGA-4Z-AA89-01 3 126137947 126137947 G C CCDC37 Missense_Mutation p.E227Q 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-4Z-AA89-01 3 132071612 132071612 G A ACPP Missense_Mutation p.G305R 0.50 deleterious(0.04) probably_damaging(0.998) TCGA-4Z-AA89-01 3 137964062 137964062 G A ARMC8 Intron 0.06 TCGA-4Z-AA89-01 3 146167020 146167020 G A PLSCR2 Silent p.A279A 0.39 TCGA-4Z-AA89-01 3 148558522 148558522 C T CPB1 Missense_Mutation p.R108W 0.31 deleterious(0.01) benign(0.004) TCGA-4Z-AA89-01 3 160118655 160118655 G C SMC4 Missense_Mutation p.R14T 0.31 tolerated_low_confidence(0.09) benign(0.002) TCGA-4Z-AA89-01 3 178916891 178916891 G A PIK3CA Missense_Mutation p.R93Q 0.05 deleterious(0.01) probably_damaging(0.978) TCGA-4Z-AA89-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.42 deleterious(0.01) probably_damaging(1) TCGA-4Z-AA89-01 3 52265547 52265547 C G TWF2 Silent p.L97L 0.08 TCGA-4Z-AA89-01 3 52437911 52437911 C G BAP1 Splice_Site p.X417_splice 0.16 TCGA-4Z-AA89-01 4 147796023 147796023 C T TTC29 Missense_Mutation p.R215Q 0.37 deleterious(0.03) possibly_damaging(0.556) TCGA-4Z-AA89-01 4 159554615 159554615 G C RXFP1 Missense_Mutation p.E320Q 0.04 tolerated(0.44) benign(0.012) TCGA-4Z-AA89-01 4 165961669 165961669 G C TRIM60 Missense_Mutation p.E149Q 0.05 tolerated(0.06) benign(0.051) TCGA-4Z-AA89-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.50 deleterious(0.01) possibly_damaging(0.594) TCGA-4Z-AA89-01 4 2733516 2733516 C T FAM193A Missense_Mutation p.S1240F 0.28 deleterious(0.01) possibly_damaging(0.748) TCGA-4Z-AA89-01 4 52883557 52883557 G A LRRC66 Missense_Mutation p.L75F 0.10 tolerated(0.15) benign(0.012) TCGA-4Z-AA89-01 4 55972868 55972868 C T KDR Missense_Mutation p.E508K 0.07 deleterious(0.02) benign(0.155) TCGA-4Z-AA89-01 4 57891140 57891140 A G POLR2B Missense_Mutation p.Y1018C 0.24 tolerated(0.29) probably_damaging(0.992) TCGA-4Z-AA89-01 5 107521822 107521822 C G FBXL17 Missense_Mutation p.D581H 0.24 deleterious(0) probably_damaging(0.998) TCGA-4Z-AA89-01 5 131607503 131607503 C T PDLIM4 Silent p.G230G 0.13 TCGA-4Z-AA89-01 5 133724024 133724024 G A UBE2B Missense_Mutation p.D84N 0.13 tolerated(0.35) benign(0.049) TCGA-4Z-AA89-01 5 139193134 139193134 G A PSD2 Silent p.A204A 0.12 TCGA-4Z-AA89-01 5 16681566 16681566 C T MYO10 Silent p.L1412L 0.38 TCGA-4Z-AA89-01 5 41012715 41012715 C T MROH2B Silent p.L1035L 0.19 TCGA-4Z-AA89-01 5 79733375 79733375 G C ZFYVE16 Missense_Mutation p.E291Q 0.21 tolerated(0.35) benign(0.025) TCGA-4Z-AA89-01 5 79733567 79733567 G A ZFYVE16 Missense_Mutation p.D355N 0.25 tolerated(0.23) benign(0.015) TCGA-4Z-AA89-01 5 95124488 95124488 C G RHOBTB3 Nonsense_Mutation p.S549* 0.11 TCGA-4Z-AA89-01 6 10556716 10556716 C T GCNT2 Intron 0.09 TCGA-4Z-AA89-01 6 112476111 112476111 T A LAMA4 Missense_Mutation p.K666N 0.45 deleterious(0.04) possibly_damaging(0.821) TCGA-4Z-AA89-01 6 133137650 133137650 A G RPS12 Missense_Mutation p.Y61C 0.22 tolerated(0.06) benign(0.229) TCGA-4Z-AA89-01 6 144109920 144109920 G C PHACTR2 Missense_Mutation p.R573T 0.30 deleterious(0) probably_damaging(0.995) TCGA-4Z-AA89-01 6 17764700 17764700 C T KIF13A Missense_Mutation p.E1687K 0.10 tolerated_low_confidence(0.38) benign(0.001) TCGA-4Z-AA89-01 6 31608053 31608053 G A BAG6 Nonsense_Mutation p.Q1027* 0.09 TCGA-4Z-AA89-01 6 40359794 40359794 G A LRFN2 Missense_Mutation p.T753M 0.54 deleterious(0) probably_damaging(0.997) TCGA-4Z-AA89-01 6 52764869 52764869 C G GSTA3 Missense_Mutation p.D93H 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-4Z-AA89-01 6 56468844 56468844 T C DST Intron 0.50 TCGA-4Z-AA89-01 6 7601709 7601709 G A SNRNP48 Missense_Mutation p.E183K 0.10 tolerated(0.06) benign(0.137) TCGA-4Z-AA89-01 7 100687057 100687057 G A MUC17 Silent p.K4120K 0.13 TCGA-4Z-AA89-01 7 103629704 103629704 A G RELN Missense_Mutation p.S34P 0.37 deleterious(0.04) benign(0.363) TCGA-4Z-AA89-01 7 13978872 13978872 C G ETV1 Splice_Site p.X79_splice 0.55 TCGA-4Z-AA89-01 7 150493676 150493676 G C TMEM176B Intron 0.16 TCGA-4Z-AA89-01 7 31683123 31683123 C T CCDC129 Silent p.S739S 0.33 TCGA-4Z-AA89-01 7 43547627 43547627 C T HECW1 Missense_Mutation p.R1255C 0.05 deleterious(0) probably_damaging(0.999) TCGA-4Z-AA89-01 7 6509247 6509247 G A KDELR2 Missense_Mutation p.H111Y 0.44 tolerated(0.65) benign(0.006) TCGA-4Z-AA89-01 7 89790153 89790153 G C STEAP1 Missense_Mutation p.R40T 0.19 tolerated_low_confidence(0.2) benign(0.002) TCGA-4Z-AA89-01 7 98528335 98528335 T G TRRAP Missense_Mutation p.L1158R 0.39 possibly_damaging(0.851) TCGA-4Z-AA89-01 8 101092487 101092487 G C RGS22 Missense_Mutation p.L72V 0.48 deleterious(0.01) benign(0.055) TCGA-4Z-AA89-01 8 130761712 130761712 G A GSDMC Nonsense_Mutation p.Q425* 0.12 TCGA-4Z-AA89-01 8 144891871 144891871 G A SCRIB Silent p.A516A 0.23 TCGA-4Z-AA89-01 8 144942388 144942388 G A EPPK1 Silent p.I1678I 0.11 TCGA-4Z-AA89-01 8 144943216 144943216 G T EPPK1 Missense_Mutation p.F1402L 0.12 benign(0.001) TCGA-4Z-AA89-01 8 69020480 69020480 C G PREX2 Nonsense_Mutation p.S951* 0.11 TCGA-4Z-AA89-01 8 85774568 85774568 C T RALYL Missense_Mutation p.R164C 0.37 deleterious(0) possibly_damaging(0.474) TCGA-4Z-AA89-01 8 88296917 88296917 G C CNBD1 Missense_Mutation p.W261C 0.32 tolerated(0.09) probably_damaging(0.982) TCGA-4Z-AA89-01 9 112216856 112216856 T A PTPN3 Splice_Site p.X97_splice 0.82 TCGA-4Z-AA89-01 9 135277549 135277549 C G TTF1 Missense_Mutation p.K220N 0.32 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-4Z-AA89-01 9 34993317 34993317 G A DNAJB5 Silent p.L143L 0.16 TCGA-4Z-AA89-01 9 5463001 5463002 - TTCA CD274 Frame_Shift_Ins p.E188Vfs*18 0.31 TCGA-4Z-AA89-01 9 82321747 82321747 C T TLE4 Missense_Mutation p.P290L 0.76 tolerated(0.07) benign(0.102) TCGA-4Z-AA89-01 X 123220456 123220456 G A STAG2 Nonsense_Mutation p.W1038* 0.83 TCGA-4Z-AA89-01 X 135772879 135772879 G C ARHGEF6 Missense_Mutation p.Q359E 0.23 tolerated(0.11) benign(0.439) TCGA-4Z-AA89-01 X 146294979 146294979 C G MIR513A1 3'Flank 0.32 TCGA-4Z-AA89-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.93 TCGA-5N-A9KI-01 10 100202940 100202940 G A HPS1 Nonsense_Mutation p.Q20* 0.29 TCGA-5N-A9KI-01 10 105795292 105795292 G A COL17A1 Missense_Mutation p.P1150S 0.47 probably_damaging(0.998) TCGA-5N-A9KI-01 10 71154737 71154737 G A HK1 Missense_Mutation p.G755S 0.62 deleterious(0.01) probably_damaging(0.998) TCGA-5N-A9KI-01 10 73461910 73461910 G A CDH23 Silent p.E435E 0.18 TCGA-5N-A9KI-01 10 94366383 94366383 G A KIF11 Missense_Mutation p.G73E 0.28 deleterious(0) probably_damaging(0.998) TCGA-5N-A9KI-01 10 99205531 99205531 C A EXOSC1 Silent p.S35S 0.25 TCGA-5N-A9KI-01 11 10051312 10051312 C T SBF2 Silent p.Q171Q 0.16 TCGA-5N-A9KI-01 11 10051313 10051313 T A SBF2 Missense_Mutation p.Q171L 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-5N-A9KI-01 11 108042849 108042849 C T NPAT Intron 0.20 TCGA-5N-A9KI-01 11 1093740 1093740 G C MUC2 Silent p.P1853P 0.19 TCGA-5N-A9KI-01 11 117860157 117860157 G A IL10RA Silent p.R63R 0.22 TCGA-5N-A9KI-01 11 118352585 118352585 C T KMT2A Nonsense_Mutation p.R1264* 0.26 TCGA-5N-A9KI-01 11 118923537 118923537 C G HYOU1 Missense_Mutation p.D267H 0.24 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KI-01 11 122928453 122928453 C T HSPA8 Missense_Mutation p.E644K 0.23 deleterious_low_confidence(0) benign(0.292) TCGA-5N-A9KI-01 11 123484252 123484252 C T GRAMD1B Missense_Mutation p.R562W 0.17 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KI-01 11 3059375 3059375 C T CARS Missense_Mutation p.E236K 0.41 tolerated(0.18) benign(0.386) TCGA-5N-A9KI-01 11 36654959 36654959 C T C11orf74 Missense_Mutation p.R88C 0.23 tolerated(0.25) benign(0.001) TCGA-5N-A9KI-01 11 46105755 46105755 G C PHF21A Missense_Mutation p.L6V 0.24 deleterious(0) probably_damaging(0.983) TCGA-5N-A9KI-01 11 48158623 48158623 T G PTPRJ Missense_Mutation p.F648V 0.21 tolerated(0.35) benign(0.014) TCGA-5N-A9KI-01 11 55563692 55563692 G C OR5D14 Missense_Mutation p.V221L 0.07 tolerated(0.51) benign(0.012) TCGA-5N-A9KI-01 11 608811 608811 C T PHRF1 Missense_Mutation p.R1118W 0.38 tolerated(0.1) probably_damaging(0.942) TCGA-5N-A9KI-01 11 62009766 62009766 C T SCGB1D2 5'UTR 0.50 TCGA-5N-A9KI-01 11 63138689 63138689 T C SLC22A9 Missense_Mutation p.L162P 0.31 deleterious(0) probably_damaging(0.934) TCGA-5N-A9KI-01 11 93779019 93779019 G C HEPHL1 Missense_Mutation p.K117N 0.19 deleterious(0) probably_damaging(0.93) TCGA-5N-A9KI-01 12 112082201 112082201 G A BRAP Silent p.T527T 0.41 TCGA-5N-A9KI-01 12 123187285 123187285 G A HCAR2 Silent p.I182I 0.35 TCGA-5N-A9KI-01 12 123686823 123686823 C G MPHOSPH9 Missense_Mutation p.D457H 0.20 deleterious(0) probably_damaging(0.981) TCGA-5N-A9KI-01 12 20769251 20769251 T A PDE3A Missense_Mutation p.L453M 0.37 tolerated(0.19) possibly_damaging(0.688) TCGA-5N-A9KI-01 12 38714394 38714394 T C ALG10B Silent p.F267F 0.36 TCGA-5N-A9KI-01 12 50358842 50358842 C T AQP5 Missense_Mutation p.P227L 0.39 deleterious(0) probably_damaging(0.996) TCGA-5N-A9KI-01 12 54394009 54394009 G A HOXC9 Missense_Mutation p.D13N 0.43 deleterious(0) probably_damaging(0.994) TCGA-5N-A9KI-01 12 81112654 81112654 A G MYF5 Missense_Mutation p.K198E 0.37 tolerated(0.26) benign(0.13) TCGA-5N-A9KI-01 12 9251330 9251330 G C A2M Nonsense_Mutation p.S575* 0.27 TCGA-5N-A9KI-01 13 113772916 113772916 C T F7 Missense_Mutation p.T332M 0.19 deleterious(0) probably_damaging(0.985) TCGA-5N-A9KI-01 13 114202656 114202656 G A TMCO3 Silent p.P603P 0.26 TCGA-5N-A9KI-01 13 25436879 25436879 T C RNF17 Missense_Mutation p.I1308T 0.36 deleterious(0) possibly_damaging(0.546) TCGA-5N-A9KI-01 13 28197127 28197127 G T POLR1D Missense_Mutation p.D48Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KI-01 13 33704024 33704024 C T STARD13 Missense_Mutation p.E264K 0.33 deleterious(0.02) possibly_damaging(0.611) TCGA-5N-A9KI-01 13 40175346 40175346 G A LHFP Missense_Mutation p.S3F 0.43 deleterious(0) probably_damaging(0.991) TCGA-5N-A9KI-01 13 42524081 42524081 G A VWA8 Nonsense_Mutation p.Q78* 0.38 TCGA-5N-A9KI-01 13 43872565 43872565 C T ENOX1 Missense_Mutation p.E455K 0.42 tolerated(0.8) benign(0.019) TCGA-5N-A9KI-01 13 49037883 49037883 T A RB1 Missense_Mutation p.M708K 0.30 deleterious(0) probably_damaging(0.989) TCGA-5N-A9KI-01 13 49047507 49047507 C A RB1 Nonsense_Mutation p.S834* 0.31 TCGA-5N-A9KI-01 13 70549864 70549864 G C KLHL1 Missense_Mutation p.Q190E 0.33 tolerated(0.4) benign(0.017) TCGA-5N-A9KI-01 13 73284477 73284477 C T MZT1 Missense_Mutation p.E78K 0.31 tolerated(0.11) benign(0.007) TCGA-5N-A9KI-01 14 21868716 21868716 C T CHD8 Missense_Mutation p.E1476K 0.57 deleterious(0) benign(0.237) TCGA-5N-A9KI-01 14 21869098 21869098 C T CHD8 Missense_Mutation p.D1436N 0.48 deleterious(0.02) benign(0.057) TCGA-5N-A9KI-01 14 51237649 51237649 C T NIN Missense_Mutation p.E394K 0.48 deleterious(0) probably_damaging(0.998) TCGA-5N-A9KI-01 14 51238066 51238066 C T NIN Missense_Mutation p.E368K 0.60 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KI-01 14 68251882 68251882 G C ZFYVE26 Silent p.G1139G 0.67 TCGA-5N-A9KI-01 14 93412807 93412807 G C ITPK1 Missense_Mutation p.P257R 0.36 deleterious(0) probably_damaging(0.989) TCGA-5N-A9KI-01 15 38239892 38239893 - A TMCO5A Frame_Shift_Ins p.I224Dfs*58 0.29 TCGA-5N-A9KI-01 15 51795225 51795225 C A DMXL2 Missense_Mutation p.A924S 0.17 tolerated(0.57) benign(0.003) TCGA-5N-A9KI-01 15 96875688 96875688 C T NR2F2 Silent p.N118N 0.54 TCGA-5N-A9KI-01 16 14742410 14742410 A T BFAR Silent p.G143G 0.20 TCGA-5N-A9KI-01 16 18602423 18602423 C T ABCC6P1 Intron 0.48 TCGA-5N-A9KI-01 16 24043464 24043464 G A PRKCB Missense_Mutation p.R99H 0.10 deleterious(0.03) benign(0.105) TCGA-5N-A9KI-01 16 30749965 30749965 G T SRCAP Missense_Mutation p.R2868S 0.18 unknown(0) TCGA-5N-A9KI-01 16 47682487 47682487 G A PHKB Missense_Mutation p.G551E 0.38 deleterious(0.01) possibly_damaging(0.651) TCGA-5N-A9KI-01 16 66600817 66600817 C T CMTM1 Missense_Mutation p.S134L 0.29 deleterious(0) possibly_damaging(0.889) TCGA-5N-A9KI-01 16 67469741 67469741 C T HSD11B2 Missense_Mutation p.T159I 0.56 deleterious(0.01) possibly_damaging(0.864) TCGA-5N-A9KI-01 16 68363001 68363001 G A PRMT7 Silent p.K105K 0.31 TCGA-5N-A9KI-01 16 84778493 84778493 G C USP10 Missense_Mutation p.E136Q 0.24 tolerated_low_confidence(0.06) benign(0.099) TCGA-5N-A9KI-01 17 21731484 21731484 G A UBBP4 Missense_Mutation p.G187S 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-5N-A9KI-01 17 33521152 33521152 G A SLC35G3 Missense_Mutation p.R59C 0.38 deleterious(0.04) benign(0.147) TCGA-5N-A9KI-01 17 37667825 37667825 C G CDK12 Missense_Mutation p.P904A 0.32 probably_damaging(0.999) TCGA-5N-A9KI-01 17 40004217 40004217 G A KLHL10 Silent p.R495R 0.38 TCGA-5N-A9KI-01 17 46607027 46607027 C G HOXB1 Missense_Mutation p.R263P 0.38 deleterious(0) probably_damaging(0.979) TCGA-5N-A9KI-01 17 61562333 61562333 G A ACE Intron 0.47 TCGA-5N-A9KI-01 17 61622589 61622589 G A KCNH6 Silent p.G885G 0.18 TCGA-5N-A9KI-01 17 650531 650531 G A GEMIN4 Missense_Mutation p.A251V 0.75 tolerated(0.43) probably_damaging(0.988) TCGA-5N-A9KI-01 17 73914282 73914282 C T FBF1 Missense_Mutation p.R721Q 0.23 tolerated(1) benign(0.01) TCGA-5N-A9KI-01 17 7577537 7577537 C T TP53 Silent p.R248R 0.70 TCGA-5N-A9KI-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.71 deleterious(0) probably_damaging(1) TCGA-5N-A9KI-01 17 78796046 78796046 G A RPTOR Silent p.L312L 0.35 TCGA-5N-A9KI-01 17 8222699 8222699 C G ARHGEF15 Missense_Mutation p.I752M 0.39 deleterious(0.01) benign(0.439) TCGA-5N-A9KI-01 18 74611105 74611105 G A ZNF236 Silent p.K605K 0.45 TCGA-5N-A9KI-01 19 10794737 10794737 G A ILF3 Intron 0.40 TCGA-5N-A9KI-01 19 13988426 13988426 G A NANOS3 Missense_Mutation p.A122T 0.27 deleterious(0) probably_damaging(1) TCGA-5N-A9KI-01 19 17692149 17692149 G A COLGALT1 Missense_Mutation p.A589T 0.07 tolerated(0.45) benign(0.014) TCGA-5N-A9KI-01 19 18870855 18870855 C G CRTC1 Missense_Mutation p.L251V 0.39 tolerated(0.39) possibly_damaging(0.755) TCGA-5N-A9KI-01 19 20959108 20959108 T G ZNF66 5'Flank 0.25 TCGA-5N-A9KI-01 19 35850452 35850452 G A FFAR3 Silent p.Q220Q 0.31 TCGA-5N-A9KI-01 19 56244617 56244617 C T NLRP9 Missense_Mutation p.A194T 0.19 tolerated(1) benign(0.004) TCGA-5N-A9KI-01 19 8174182 8174182 C T FBN3 Missense_Mutation p.R1516Q 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-5N-A9KI-01 1 10510060 10510060 T C CORT 5'UTR 0.15 TCGA-5N-A9KI-01 1 110129355 110129355 G A GNAI3 Missense_Mutation p.R242Q 0.33 deleterious(0) probably_damaging(0.996) TCGA-5N-A9KI-01 1 11270889 11270889 G A MTOR Silent p.L1212L 0.34 TCGA-5N-A9KI-01 1 147380454 147380454 G A GJA8 Silent p.P124P 0.22 TCGA-5N-A9KI-01 1 147380668 147380668 G A GJA8 Missense_Mutation p.V196M 0.14 deleterious(0.03) possibly_damaging(0.67) TCGA-5N-A9KI-01 1 148004752 148004752 G C NBPF14 Silent p.V860V 0.28 TCGA-5N-A9KI-01 1 150483278 150483278 C T ECM1 Intron 0.48 TCGA-5N-A9KI-01 1 155264371 155264371 C - PKLR Frame_Shift_Del p.A291Pfs*30 0.32 TCGA-5N-A9KI-01 1 155736232 155736232 G C GON4L Missense_Mutation p.S1011C 0.19 tolerated(0.46) benign(0.051) TCGA-5N-A9KI-01 1 156838002 156838002 G C NTRK1 Missense_Mutation p.G179R 0.59 tolerated(0.34) benign(0.001) TCGA-5N-A9KI-01 1 16073432 16073432 C T TMEM82 Silent p.F276F 0.39 TCGA-5N-A9KI-01 1 16358235 16358235 G A CLCNKA Missense_Mutation p.M551I 0.43 deleterious(0) benign(0.252) TCGA-5N-A9KI-01 1 170965731 170965731 G - MROH9 Frame_Shift_Del p.D475Tfs*32 0.35 TCGA-5N-A9KI-01 1 185976297 185976297 G C HMCN1 Missense_Mutation p.D1505H 0.17 probably_damaging(1) TCGA-5N-A9KI-01 1 203802941 203802941 G A ZC3H11A Silent p.L278L 0.58 TCGA-5N-A9KI-01 1 207653398 207653398 G A CR2 Missense_Mutation p.R1063H 0.16 deleterious(0) benign(0.055) TCGA-5N-A9KI-01 1 234599604 234599604 G T TARBP1 Missense_Mutation p.L460I 0.46 tolerated(0.4) benign(0.367) TCGA-5N-A9KI-01 1 248436880 248436880 C A OR2T33 Missense_Mutation p.M79I 0.41 deleterious(0.02) benign(0.039) TCGA-5N-A9KI-01 1 27087932 27087940 CCATGAACC - ARID1A Nonsense_Mutation p.S740_Q743delins* 0.25 TCGA-5N-A9KI-01 1 3328631 3328631 G A PRDM16 Missense_Mutation p.D624N 0.40 deleterious(0) probably_damaging(0.968) TCGA-5N-A9KI-01 1 39909220 39909220 G A MACF1 Missense_Mutation p.A4410T 0.36 probably_damaging(0.999) TCGA-5N-A9KI-01 1 45101777 45101777 G C RNF220 Missense_Mutation p.E357Q 0.34 deleterious(0.02) possibly_damaging(0.906) TCGA-5N-A9KI-01 1 55337047 55337047 C T DHCR24 Missense_Mutation p.M284I 0.30 tolerated(0.08) benign(0.01) TCGA-5N-A9KI-01 1 62734112 62734112 C A KANK4 Missense_Mutation p.S693I 0.35 deleterious(0) benign(0.032) TCGA-5N-A9KI-01 1 77509894 77509894 G A ST6GALNAC5 Silent p.L89L 0.42 TCGA-5N-A9KI-01 1 78205089 78205089 T C USP33 Missense_Mutation p.Y102C 0.38 tolerated(0.32) benign(0.008) TCGA-5N-A9KI-01 1 93680430 93680430 G A CCDC18 Silent p.L595L 0.10 TCGA-5N-A9KI-01 20 19955675 19955675 G C RIN2 Missense_Mutation p.E385Q 0.22 tolerated(0.21) benign(0.039) TCGA-5N-A9KI-01 20 23016426 23016426 C G SSTR4 Missense_Mutation p.F102L 0.42 deleterious(0.02) probably_damaging(0.927) TCGA-5N-A9KI-01 20 23016427 23016427 G T SSTR4 Missense_Mutation p.V103L 0.41 tolerated(1) benign(0.021) TCGA-5N-A9KI-01 20 44175955 44175955 G T EPPIN-WFDC6 Silent p.V14V 0.37 TCGA-5N-A9KI-01 22 22569533 22569533 C T IGLV10-54 Silent p.P75P 0.39 TCGA-5N-A9KI-01 22 32616910 32616910 C A SLC5A4 Nonsense_Mutation p.E589* 0.36 TCGA-5N-A9KI-01 2 136872782 136872782 T C CXCR4 Missense_Mutation p.K243R 0.23 tolerated(0.38) probably_damaging(0.998) TCGA-5N-A9KI-01 2 160998508 160998508 G A ITGB6 Silent p.I364I 0.39 TCGA-5N-A9KI-01 2 1843040 1843040 G A MYT1L Silent p.D985D 0.11 TCGA-5N-A9KI-01 2 197002358 197002358 G A STK17B Missense_Mutation p.S311F 0.51 tolerated(0.12) benign(0.003) TCGA-5N-A9KI-01 2 203836414 203836414 A G CARF Silent p.L428L 0.53 TCGA-5N-A9KI-01 2 214794778 214794778 C T SPAG16 Missense_Mutation p.R437C 0.23 deleterious(0.02) possibly_damaging(0.72) TCGA-5N-A9KI-01 2 27147872 27147872 G A DPYSL5 Missense_Mutation p.D127N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-5N-A9KI-01 2 38978412 38978412 C A SRSF7 5'UTR 0.50 TCGA-5N-A9KI-01 2 43798960 43798960 C G THADA Silent p.R650R 0.35 TCGA-5N-A9KI-01 2 61430332 61430332 G C USP34 Missense_Mutation p.L3151V 0.41 tolerated(0.91) benign(0.014) TCGA-5N-A9KI-01 2 74438990 74438990 G C MTHFD2 Missense_Mutation p.E296Q 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-5N-A9KI-01 2 74755967 74755967 G A AUP1 Silent p.F145F 0.30 TCGA-5N-A9KI-01 2 80529498 80529498 T A LRRTM1 Missense_Mutation p.M483L 0.26 tolerated(1) benign(0.004) TCGA-5N-A9KI-01 3 150263926 150263926 C T SERP1 5'UTR 0.33 TCGA-5N-A9KI-01 3 150403766 150403766 A G FAM194A Missense_Mutation p.L218S 0.48 deleterious(0) probably_damaging(0.998) TCGA-5N-A9KI-01 3 178921339 178921339 G A PIK3CA Missense_Mutation p.R274K 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-5N-A9KI-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.35 deleterious(0.02) probably_damaging(0.959) TCGA-5N-A9KI-01 3 186302326 186302326 C T DNAJB11 Silent p.I320I 0.11 TCGA-5N-A9KI-01 3 186969531 186969531 C A MASP1 Missense_Mutation p.C301F 0.06 deleterious(0) probably_damaging(1) TCGA-5N-A9KI-01 3 195479244 195479244 C T MUC4 Silent p.S5194S 0.14 TCGA-5N-A9KI-01 3 48718817 48718817 C T NCKIPSD Missense_Mutation p.R332Q 0.11 deleterious(0.02) benign(0.35) TCGA-5N-A9KI-01 3 49700765 49700765 C T BSN Missense_Mutation p.S3725F 0.37 unknown(0) TCGA-5N-A9KI-01 3 50332478 50332478 G A HYAL3 Missense_Mutation p.R186W 0.38 tolerated(0.12) benign(0.024) TCGA-5N-A9KI-01 3 50379130 50379130 C T ZMYND10 Silent p.R374R 0.28 TCGA-5N-A9KI-01 3 52441983 52441983 G A BAP1 Silent p.F122F 0.38 TCGA-5N-A9KI-01 3 62631492 62631492 G A CADPS Silent p.L410L 0.16 TCGA-5N-A9KI-01 4 120193094 120193094 C T USP53 Silent p.H693H 0.12 TCGA-5N-A9KI-01 4 13606163 13606163 G C BOD1L1 Silent p.T787T 0.33 TCGA-5N-A9KI-01 4 141832393 141832393 G A RNF150 Missense_Mutation p.T368I 0.19 tolerated(0.24) benign(0.02) TCGA-5N-A9KI-01 4 166964485 166964485 G A TLL1 Missense_Mutation p.D480N 0.43 deleterious(0) possibly_damaging(0.537) TCGA-5N-A9KI-01 4 167020554 167020554 C T TLL1 Nonsense_Mutation p.R928* 0.09 TCGA-5N-A9KI-01 4 23815770 23815770 G A PPARGC1A Missense_Mutation p.P446S 0.21 tolerated(0.4) benign(0.165) TCGA-5N-A9KI-01 4 3318549 3318549 G A RGS12 Missense_Mutation p.D218N 0.21 tolerated(0.13) possibly_damaging(0.787) TCGA-5N-A9KI-01 4 47765486 47765487 - T CORIN Frame_Shift_Ins p.T176Nfs*23 0.10 TCGA-5N-A9KI-01 4 48993959 48993959 C T CWH43 Silent p.L121L 0.19 TCGA-5N-A9KI-01 4 71099864 71099864 C T FDCSP Missense_Mutation p.P73L 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-5N-A9KI-01 4 79399118 79399118 C T FRAS1 Silent p.I2667I 0.60 TCGA-5N-A9KI-01 4 88580580 88580580 C T DMP1 Intron 0.20 TCGA-5N-A9KI-01 4 9784853 9784853 C T DRD5 Silent p.I400I 0.33 TCGA-5N-A9KI-01 5 112339691 112339691 G T DCP2 Missense_Mutation p.D287Y 0.58 deleterious(0) possibly_damaging(0.823) TCGA-5N-A9KI-01 5 13792244 13792244 C T DNAH5 Silent p.L2769L 0.05 TCGA-5N-A9KI-01 5 139889313 139889313 C T ANKHD1 Missense_Mutation p.P1286L 0.47 possibly_damaging(0.908) TCGA-5N-A9KI-01 5 38949890 38949890 G A RICTOR Missense_Mutation p.P1354S 0.57 tolerated(0.44) possibly_damaging(0.849) TCGA-5N-A9KI-01 5 5457558 5457558 C G KIAA0947 Missense_Mutation p.L269V 0.18 deleterious(0.05) benign(0.208) TCGA-5N-A9KI-01 5 88018477 88018477 C T MEF2C Missense_Mutation p.E466K 0.64 deleterious(0.03) possibly_damaging(0.78) TCGA-5N-A9KI-01 6 10731013 10731013 A C TMEM14C 3'UTR 0.50 TCGA-5N-A9KI-01 6 167356544 167356544 C T RNASET2 Missense_Mutation p.D99N 0.19 deleterious(0.04) probably_damaging(0.967) TCGA-5N-A9KI-01 6 170033160 170033160 G A WDR27 Silent p.I702I 0.37 TCGA-5N-A9KI-01 6 47681679 47681679 A G GPR115 Missense_Mutation p.N233S 0.27 tolerated(0.7) benign(0.004) TCGA-5N-A9KI-01 6 52357190 52357190 G T EFHC1 3'UTR 0.33 TCGA-5N-A9KI-01 6 52962551 52962551 G C FBXO9 Missense_Mutation p.E423Q 0.40 deleterious(0.05) possibly_damaging(0.501) TCGA-5N-A9KI-01 6 55142194 55142194 C G HCRTR2 Missense_Mutation p.S260C 0.26 deleterious(0.01) benign(0.315) TCGA-5N-A9KI-01 6 55381367 55381367 T C HMGCLL1 Missense_Mutation p.H141R 0.43 tolerated(0.68) benign(0.001) TCGA-5N-A9KI-01 6 74497001 74497001 G A CD109 Missense_Mutation p.M794I 0.36 tolerated(0.23) benign(0.001) TCGA-5N-A9KI-01 6 76386922 76386922 G A SENP6 Missense_Mutation p.E600K 0.35 tolerated(0.07) probably_damaging(0.991) TCGA-5N-A9KI-01 7 102585002 102585002 A G LRRC17 Missense_Mutation p.H425R 0.39 tolerated_low_confidence(0.08) benign(0.034) TCGA-5N-A9KI-01 7 107834532 107834532 C T NRCAM Missense_Mutation p.D572N 0.16 deleterious(0) probably_damaging(1) TCGA-5N-A9KI-01 7 121000143 121000143 C T FAM3C Missense_Mutation p.D141N 0.38 tolerated(0.07) benign(0.039) TCGA-5N-A9KI-01 7 121653452 121653452 C - PTPRZ1 Frame_Shift_Del p.S1451Yfs*5 0.26 TCGA-5N-A9KI-01 7 122054129 122054129 C T CADPS2 Missense_Mutation p.G861E 0.32 tolerated(0.9) benign(0.009) TCGA-5N-A9KI-01 7 138936771 138936771 G A UBN2 Missense_Mutation p.E211K 0.31 deleterious(0) probably_damaging(0.987) TCGA-5N-A9KI-01 7 143632514 143632514 C A OR2F2 Silent p.L63L 0.15 TCGA-5N-A9KI-01 7 148709080 148709080 C G PDIA4 Missense_Mutation p.M279I 0.39 deleterious(0.04) benign(0.238) TCGA-5N-A9KI-01 7 158715120 158715120 C G WDR60 Silent p.V658V 0.11 TCGA-5N-A9KI-01 7 18633643 18633643 C A HDAC9 Silent p.R219R 0.25 TCGA-5N-A9KI-01 7 22176590 22176590 C T RAPGEF5 Silent p.G610G 0.29 TCGA-5N-A9KI-01 7 31682996 31682996 C T CCDC129 Missense_Mutation p.P697L 0.32 tolerated(0.21) benign(0.009) TCGA-5N-A9KI-01 7 38725054 38725054 C T FAM183B 3'UTR 0.39 TCGA-5N-A9KI-01 7 48311668 48311668 G A ABCA13 Nonsense_Mutation p.W802* 0.17 TCGA-5N-A9KI-01 7 71130456 71130456 C T WBSCR17 Missense_Mutation p.R381W 0.38 deleterious(0) probably_damaging(0.985) TCGA-5N-A9KI-01 7 72419160 72419160 G A POM121 3'UTR 0.17 TCGA-5N-A9KI-01 7 81596491 81596491 G T CACNA2D1 Missense_Mutation p.N832K 0.34 deleterious(0.03) possibly_damaging(0.487) TCGA-5N-A9KI-01 7 92848720 92848720 G - HEPACAM2 Frame_Shift_Del p.H42Mfs*43 0.21 TCGA-5N-A9KI-01 8 12040312 12040312 A T FAM86B1 3'UTR 0.10 TCGA-5N-A9KI-01 8 16963070 16963070 C T MICU3 Missense_Mutation p.R412C 0.17 tolerated(0.05) possibly_damaging(0.772) TCGA-5N-A9KI-01 8 2813284 2813284 G C CSMD1 Missense_Mutation p.A3274G 0.05 benign(0.287) TCGA-5N-A9KI-01 8 38109676 38109676 C G DDHD2 Missense_Mutation p.I496M 0.33 tolerated(0.05) benign(0.065) TCGA-5N-A9KI-01 8 6728121 6728121 C T DEFB1 3'UTR 0.27 TCGA-5N-A9KI-01 8 69445439 69445439 C A C8orf34 Intron 0.50 TCGA-5N-A9KI-01 8 89339430 89339430 G A MMP16 Silent p.I2I 0.07 TCGA-5N-A9KI-01 8 99169962 99169962 G A POP1 Silent p.L846L 0.33 TCGA-5N-A9KI-01 9 19296045 19296045 C T DENND4C Missense_Mutation p.R281W 0.34 deleterious(0.04) benign(0.001) TCGA-5N-A9KI-01 9 34976185 34976185 T C KIAA1045 Missense_Mutation p.Y201H 0.48 tolerated(0.12) probably_damaging(0.966) TCGA-5N-A9KI-01 9 73736286 73736286 A G TRPM3 5'UTR 0.29 TCGA-5N-A9KI-01 X 100880170 100880170 C A ARMCX3 Missense_Mutation p.S67R 0.11 tolerated(0.06) benign(0.005) TCGA-5N-A9KI-01 X 100880625 100880625 C T ARMCX3 Missense_Mutation p.S219F 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-5N-A9KI-01 X 105193617 105193617 G T NRK Missense_Mutation p.L1469F 0.17 tolerated(0.07) probably_damaging(0.912) TCGA-5N-A9KI-01 X 119249495 119249495 A T RHOXF1 Missense_Mutation p.M93K 0.33 tolerated(0.66) benign(0.042) TCGA-5N-A9KI-01 X 123654563 123654563 C G TENM1 Silent p.G1035G 0.31 TCGA-5N-A9KI-01 X 123657463 123657463 C A TENM1 Silent p.V928V 0.31 TCGA-5N-A9KI-01 X 128626023 128626023 A T SMARCA1 Missense_Mutation p.F570L 0.30 deleterious(0) probably_damaging(1) TCGA-5N-A9KI-01 X 129200942 129200942 C A ELF4 Missense_Mutation p.Q582H 0.33 tolerated(0.4) benign(0.001) TCGA-5N-A9KI-01 X 129803977 129803977 G C ENOX2 Nonsense_Mutation p.S248* 0.35 TCGA-5N-A9KI-01 X 131351113 131351113 C G RAP2C Missense_Mutation p.E62Q 0.30 deleterious(0.01) benign(0.085) TCGA-5N-A9KI-01 X 144906571 144906571 C T SLITRK2 3'UTR 0.19 TCGA-5N-A9KI-01 X 153588177 153588177 G A FLNA Missense_Mutation p.S1301L 0.33 deleterious(0) possibly_damaging(0.673) TCGA-5N-A9KI-01 X 15821824 15821824 G A ZRSR2 Missense_Mutation p.E73K 0.80 tolerated(0.15) unknown(0) TCGA-5N-A9KI-01 X 19507020 19507020 G A MAP3K15 Nonsense_Mutation p.R143* 0.44 TCGA-5N-A9KI-01 X 19935339 19935339 G C CXorf23 3'UTR 0.48 TCGA-5N-A9KI-01 X 37028497 37028497 G C FAM47C Missense_Mutation p.E672Q 0.38 tolerated(0.17) possibly_damaging(0.598) TCGA-5N-A9KI-01 X 47774800 47774800 G T ZNF81 Missense_Mutation p.G252V 0.23 tolerated(0.07) possibly_damaging(0.786) TCGA-5N-A9KI-01 X 67454411 67454411 T A OPHN1 Missense_Mutation p.E135V 0.44 deleterious(0.02) probably_damaging(0.921) TCGA-5N-A9KI-01 X 70316779 70316779 C T FOXO4 Missense_Mutation p.T134I 0.32 deleterious(0) benign(0.03) TCGA-5N-A9KM-01 10 101645608 101645608 C T DNMBP Missense_Mutation p.G1212S 0.73 tolerated(0.27) benign(0.007) TCGA-5N-A9KM-01 10 124712378 124712378 C A C10orf88 Missense_Mutation p.R112M 0.29 deleterious(0) probably_damaging(0.939) TCGA-5N-A9KM-01 10 1313186 1313186 G A ADARB2 Missense_Mutation p.R386C 0.28 deleterious(0.03) possibly_damaging(0.824) TCGA-5N-A9KM-01 10 1405359 1405359 C T ADARB2 Missense_Mutation p.G314D 0.33 deleterious(0.03) probably_damaging(1) TCGA-5N-A9KM-01 10 45936825 45936825 A G ALOX5 Missense_Mutation p.I407V 0.37 tolerated(0.23) benign(0.199) TCGA-5N-A9KM-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.25 TCGA-5N-A9KM-01 10 98781136 98781136 G A SLIT1 Missense_Mutation p.H873Y 0.29 deleterious(0) benign(0.328) TCGA-5N-A9KM-01 11 103797816 103797816 T C PDGFD Missense_Mutation p.S271G 0.38 deleterious(0) possibly_damaging(0.762) TCGA-5N-A9KM-01 11 105925184 105925184 T C KBTBD3 Splice_Site p.X78_splice 0.32 TCGA-5N-A9KM-01 11 108235876 108235876 G C ATM Missense_Mutation p.R2973T 0.33 deleterious(0.04) possibly_damaging(0.493) TCGA-5N-A9KM-01 11 116692343 116692343 G A APOA4 Missense_Mutation p.T144I 0.23 deleterious(0.01) possibly_damaging(0.751) TCGA-5N-A9KM-01 11 117389266 117389266 G A DSCAML1 Silent p.P535P 0.29 TCGA-5N-A9KM-01 11 128642864 128642864 C T FLI1 Silent p.L191L 0.42 TCGA-5N-A9KM-01 11 134086987 134086987 G C NCAPD3 Missense_Mutation p.I75M 0.21 deleterious(0) benign(0.361) TCGA-5N-A9KM-01 11 20623154 20623154 G A SLC6A5 Silent p.L161L 0.50 TCGA-5N-A9KM-01 11 36597157 36597157 A G RAG1 Missense_Mutation p.Y768C 0.64 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-5N-A9KM-01 11 47640288 47640288 T C MTCH2 3'UTR 0.38 TCGA-5N-A9KM-01 11 55653535 55653535 A G TRIM51 Intron 0.31 TCGA-5N-A9KM-01 11 59608634 59608634 A C GIF Missense_Mutation p.S225R 0.40 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 11 60235819 60235819 A G MS4A1 Missense_Mutation p.N258D 0.21 tolerated(0.05) benign(0.272) TCGA-5N-A9KM-01 11 61897526 61897526 G T INCENP Missense_Mutation p.R176L 0.24 deleterious(0) unknown(0) TCGA-5N-A9KM-01 11 76910745 76910745 C T MYO7A Silent p.D1578D 0.29 TCGA-5N-A9KM-01 11 76940221 76940221 A G GDPD4 Silent p.F482F 0.38 TCGA-5N-A9KM-01 11 78433751 78433751 G T TENM4 Silent p.I1254I 0.29 TCGA-5N-A9KM-01 11 9466718 9466718 G C IPO7 Missense_Mutation p.G1032R 0.43 deleterious(0.01) benign(0.1) TCGA-5N-A9KM-01 12 107219570 107219570 A T RIC8B Missense_Mutation p.T270S 0.36 tolerated(0.51) benign(0.248) TCGA-5N-A9KM-01 12 114836427 114836427 G A TBX5 Missense_Mutation p.S154F 0.35 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 12 133359053 133359053 C T GOLGA3 Silent p.K1098K 0.33 TCGA-5N-A9KM-01 12 33030811 33030811 C T PKP2 Missense_Mutation p.E335K 0.19 tolerated(0.25) benign(0.394) TCGA-5N-A9KM-01 12 40699741 40699741 T C LRRK2 Missense_Mutation p.I1311T 0.44 tolerated(0.13) benign(0.19) TCGA-5N-A9KM-01 12 57175942 57175942 G A HSD17B6 Silent p.L166L 0.22 TCGA-5N-A9KM-01 12 7302253 7302253 G A CLSTN3 Missense_Mutation p.E737K 0.23 deleterious(0.01) benign(0.109) TCGA-5N-A9KM-01 12 8289484 8289484 A G CLEC4A Missense_Mutation p.Y184C 0.35 deleterious(0) probably_damaging(0.982) TCGA-5N-A9KM-01 12 85257241 85257241 A G SLC6A15 Missense_Mutation p.Y599H 0.36 deleterious(0) probably_damaging(1) TCGA-5N-A9KM-01 12 8757435 8757435 G T AICDA Missense_Mutation p.R171S 0.32 tolerated(0.27) possibly_damaging(0.7) TCGA-5N-A9KM-01 12 9243950 9243950 C T A2M Silent p.L772L 0.31 TCGA-5N-A9KM-01 13 112722298 112722298 C T SOX1 Missense_Mutation p.A109V 0.35 deleterious(0) probably_damaging(0.978) TCGA-5N-A9KM-01 13 77652990 77652990 T C MYCBP2 Missense_Mutation p.K3780R 0.35 probably_damaging(0.965) TCGA-5N-A9KM-01 14 20216413 20216413 A G OR4Q3 Missense_Mutation p.Y276C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-5N-A9KM-01 14 20850179 20850179 C T TEP1 Silent p.R1439R 0.29 TCGA-5N-A9KM-01 14 24885813 24885813 G T NYNRIN Nonsense_Mutation p.E1620* 0.32 TCGA-5N-A9KM-01 14 25044608 25044608 G A CTSG Silent p.I22I 0.32 TCGA-5N-A9KM-01 14 36147249 36147249 G C RALGAPA1 Missense_Mutation p.P1005A 0.33 tolerated(0.21) probably_damaging(0.999) TCGA-5N-A9KM-01 14 56757153 56757153 G A PELI2 Silent p.S225S 0.21 TCGA-5N-A9KM-01 14 58675798 58675798 C T ACTR10 Silent p.L105L 0.31 TCGA-5N-A9KM-01 14 58814447 58814447 G C ARID4A Missense_Mutation p.E419Q 0.27 tolerated(0.33) benign(0.002) TCGA-5N-A9KM-01 14 74824655 74824655 C T VRTN Missense_Mutation p.S390F 0.35 tolerated(0.43) possibly_damaging(0.467) TCGA-5N-A9KM-01 14 81259266 81259266 C T CEP128 Silent p.Q466Q 0.29 TCGA-5N-A9KM-01 14 88737209 88737209 G A KCNK10 Intron 0.28 TCGA-5N-A9KM-01 14 95562233 95562233 T A DICER1 Missense_Mutation p.Y1675F 0.32 deleterious(0.04) possibly_damaging(0.7) TCGA-5N-A9KM-01 14 97342439 97342439 G A VRK1 Missense_Mutation p.E381K 0.26 tolerated(0.32) benign(0.001) TCGA-5N-A9KM-01 15 20489409 20489409 A G CHEK2P2 Intron 0.14 TCGA-5N-A9KM-01 15 29385406 29385406 G A APBA2 Missense_Mutation p.A400T 0.32 deleterious(0) probably_damaging(0.992) TCGA-5N-A9KM-01 15 44811383 44811383 G A CTDSPL2 Missense_Mutation p.E377K 0.16 deleterious(0.03) possibly_damaging(0.873) TCGA-5N-A9KM-01 15 63970199 63970199 G C HERC1 Silent p.P2305P 0.41 TCGA-5N-A9KM-01 15 65983319 65983319 T G DENND4A Missense_Mutation p.T1204P 0.32 tolerated(0.08) benign(0.392) TCGA-5N-A9KM-01 15 72193534 72193534 G A MYO9A Nonsense_Mutation p.Q1050* 0.32 TCGA-5N-A9KM-01 15 90630733 90630733 C T IDH2 Silent p.K251K 0.33 TCGA-5N-A9KM-01 15 96877760 96877760 G A NR2F2 Missense_Mutation p.E300K 0.23 deleterious(0.03) possibly_damaging(0.85) TCGA-5N-A9KM-01 16 1270723 1270723 C T CACNA1H Missense_Mutation p.P2264L 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-5N-A9KM-01 16 14294208 14294210 GCC - MKL2 Intron 0.44 TCGA-5N-A9KM-01 16 23702714 23702714 C T ERN2 Silent p.E851E 0.33 TCGA-5N-A9KM-01 16 25268077 25268077 C T ZKSCAN2 Silent p.E124E 0.36 TCGA-5N-A9KM-01 16 29896918 29896918 A G SEZ6L2 Missense_Mutation p.L454P 0.29 deleterious(0) probably_damaging(0.971) TCGA-5N-A9KM-01 16 30749676 30749687 GAGCTGCCAGCA CAGG SRCAP Frame_Shift_Del p.G2772Afs*9 0.32 TCGA-5N-A9KM-01 16 67709745 67709745 C T GFOD2 Silent p.L157L 0.50 TCGA-5N-A9KM-01 16 74339435 74339435 T A PSMD7 Missense_Mutation p.V260E 0.35 deleterious(0) possibly_damaging(0.905) TCGA-5N-A9KM-01 16 77387635 77387635 C A ADAMTS18 Missense_Mutation p.V537L 0.38 tolerated(0.53) benign(0.001) TCGA-5N-A9KM-01 17 17380315 17380315 C T MED9 5'UTR 0.68 TCGA-5N-A9KM-01 17 18022384 18022384 G T MYO15A Missense_Mutation p.M90I 0.73 possibly_damaging(0.675) TCGA-5N-A9KM-01 17 35978337 35978337 T A DDX52 Missense_Mutation p.Q581L 0.73 tolerated(0.06) benign(0.003) TCGA-5N-A9KM-01 17 40179065 40179065 G T ZNF385C Silent p.I450I 0.66 TCGA-5N-A9KM-01 17 43220896 43220896 C A ACBD4 Nonsense_Mutation p.S305* 0.22 TCGA-5N-A9KM-01 17 43319768 43319768 C A FMNL1 Missense_Mutation p.A649E 0.08 deleterious(0) probably_damaging(0.992) TCGA-5N-A9KM-01 17 4995392 4995392 C T ZFP3 Missense_Mutation p.A198V 0.82 tolerated(0.27) probably_damaging(0.934) TCGA-5N-A9KM-01 17 57952056 57952056 T A TUBD1 Missense_Mutation p.M260L 0.76 tolerated(0.65) benign(0.001) TCGA-5N-A9KM-01 17 61995399 61995399 C A GH1 Missense_Mutation p.R90M 0.44 tolerated(0.13) benign(0.037) TCGA-5N-A9KM-01 17 63010911 63010911 T C GNA13 Missense_Mutation p.R200G 0.74 deleterious(0) probably_damaging(0.914) TCGA-5N-A9KM-01 17 77043710 77043710 G A C1QTNF1 Missense_Mutation p.G129E 0.71 deleterious(0) probably_damaging(1) TCGA-5N-A9KM-01 17 8449913 8449913 G A MYH10 Silent p.P409P 0.66 TCGA-5N-A9KM-01 18 40323588 40323588 T C RIT2 Missense_Mutation p.H175R 0.29 deleterious(0.02) possibly_damaging(0.805) TCGA-5N-A9KM-01 18 44560093 44560093 A G TCEB3B Missense_Mutation p.Y515H 0.47 deleterious(0) probably_damaging(0.986) TCGA-5N-A9KM-01 18 59894553 59894553 A G KIAA1468 Missense_Mutation p.N297S 0.39 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 19 17057909 17057909 G A CPAMD8 Silent p.S926S 0.32 TCGA-5N-A9KM-01 19 17716853 17716853 A G UNC13A 3'UTR 0.43 TCGA-5N-A9KM-01 19 19465235 19465235 G A MAU2 Nonsense_Mutation p.W540* 0.10 TCGA-5N-A9KM-01 19 20003366 20003366 C G ZNF253 Nonsense_Mutation p.S437* 0.11 TCGA-5N-A9KM-01 19 22364299 22364299 A G ZNF676 Missense_Mutation p.C74R 0.57 deleterious(0.04) benign(0.396) TCGA-5N-A9KM-01 19 22939843 22939843 A G ZNF99 3'Flank 0.23 TCGA-5N-A9KM-01 19 2351574 2351574 G A LLfos-48D6.1 3'Flank 0.45 TCGA-5N-A9KM-01 19 36256020 36256020 C G C19orf55 Missense_Mutation p.P238A 0.35 tolerated(0.06) benign(0.429) TCGA-5N-A9KM-01 19 38954077 38954077 C T RYR1 Silent p.P864P 0.35 TCGA-5N-A9KM-01 19 40947633 40947633 G A SERTAD3 Missense_Mutation p.L119F 0.34 tolerated(0.71) benign(0.012) TCGA-5N-A9KM-01 19 44932582 44932582 C T ZNF229 Missense_Mutation p.G792R 0.16 deleterious(0.03) probably_damaging(0.965) TCGA-5N-A9KM-01 19 48378081 48378081 C T SULT2A1 Missense_Mutation p.R193K 0.33 tolerated(0.07) benign(0.003) TCGA-5N-A9KM-01 19 50266377 50266377 G A TSKS Missense_Mutation p.A43V 0.24 tolerated_low_confidence(0.56) benign(0.006) TCGA-5N-A9KM-01 19 50393021 50393021 G A IL4I1 Missense_Mutation p.P559L 0.26 deleterious_low_confidence(0.02) benign(0.031) TCGA-5N-A9KM-01 19 50936181 50936181 G T MYBPC2 5'UTR 0.60 TCGA-5N-A9KM-01 19 51215333 51215333 G A SHANK1 Silent p.D277D 0.22 TCGA-5N-A9KM-01 19 51219965 51219965 C T SHANK1 Missense_Mutation p.S71N 0.25 benign(0.153) TCGA-5N-A9KM-01 19 53057325 53057325 C T ZNF808 Silent p.L386L 0.18 TCGA-5N-A9KM-01 19 53762816 53762816 A G VN1R2 Nonstop_Mutation p.*396Wext*? 0.46 TCGA-5N-A9KM-01 19 55176287 55176287 C T LILRB4 Silent p.S231S 0.21 TCGA-5N-A9KM-01 19 56423785 56423785 T A NLRP13 Silent p.T466T 0.52 TCGA-5N-A9KM-01 19 8993547 8993547 T C MUC16 Splice_Site p.X13848_splice 0.43 TCGA-5N-A9KM-01 19 9024858 9024858 T C MUC16 Missense_Mutation p.Y12335C 0.51 probably_damaging(0.918) TCGA-5N-A9KM-01 1 152187689 152187689 C G HRNR Missense_Mutation p.R2139T 0.05 unknown(0) TCGA-5N-A9KM-01 1 153660633 153660633 G T NPR1 Missense_Mutation p.A785S 0.25 tolerated(0.21) possibly_damaging(0.646) TCGA-5N-A9KM-01 1 158324255 158324255 C A CD1E Missense_Mutation p.S49R 0.39 deleterious(0) possibly_damaging(0.837) TCGA-5N-A9KM-01 1 159283524 159283524 T - OR10J3 Frame_Shift_Del p.N309Tfs*5 0.25 TCGA-5N-A9KM-01 1 159505521 159505521 A G OR10J5 Missense_Mutation p.S93P 0.29 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 1 16375037 16375037 G A CLCNKB Silent p.A205A 0.33 TCGA-5N-A9KM-01 1 16458725 16458725 A - EPHA2 Frame_Shift_Del p.L720Rfs*8 0.43 TCGA-5N-A9KM-01 1 16731547 16731547 C T SPATA21 Silent p.Q242Q 0.37 TCGA-5N-A9KM-01 1 167742599 167742599 A T MPZL1 Missense_Mutation p.Y200F 0.24 deleterious(0) probably_damaging(0.996) TCGA-5N-A9KM-01 1 176709223 176709223 C T PAPPA2 Missense_Mutation p.P1348S 0.17 tolerated(0.14) benign(0.043) TCGA-5N-A9KM-01 1 176709325 176709325 G A PAPPA2 Missense_Mutation p.G1382R 0.21 tolerated(0.42) benign(0.007) TCGA-5N-A9KM-01 1 176762783 176762783 G T PAPPA2 Missense_Mutation p.W1703L 0.45 deleterious(0.01) probably_damaging(0.919) TCGA-5N-A9KM-01 1 196759226 196759228 CCT - CFHR3 In_Frame_Del p.S223del 0.29 TCGA-5N-A9KM-01 1 201980398 201980399 - C ELF3 Frame_Shift_Ins p.N46Qfs*46 0.19 TCGA-5N-A9KM-01 1 201982311 201982312 - AA ELF3 Frame_Shift_Ins p.G231Kfs*24 0.24 TCGA-5N-A9KM-01 1 202194618 202194618 G T LGR6 Nonsense_Mutation p.E94* 0.31 TCGA-5N-A9KM-01 1 202733249 202733249 C T KDM5B Missense_Mutation p.E246K 0.32 tolerated(0.32) benign(0.047) TCGA-5N-A9KM-01 1 206658541 206658541 T C IKBKE Missense_Mutation p.V505A 0.27 tolerated(0.58) benign(0.005) TCGA-5N-A9KM-01 1 21014231 21014231 A G KIF17 Missense_Mutation p.S530P 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.634) TCGA-5N-A9KM-01 1 223981037 223981037 C T TP53BP2 Missense_Mutation p.E944K 0.45 deleterious(0) probably_damaging(0.997) TCGA-5N-A9KM-01 1 236205406 236205406 G A NID1 Silent p.F313F 0.35 TCGA-5N-A9KM-01 1 247695367 247695367 G A OR2C3 Silent p.S149S 0.31 TCGA-5N-A9KM-01 1 248084409 248084409 G T OR2T8 Silent p.L30L 0.38 TCGA-5N-A9KM-01 1 44433356 44433356 G A IPO13 3'UTR 0.35 TCGA-5N-A9KM-01 1 46714069 46714069 A G RAD54L 5'UTR 0.26 TCGA-5N-A9KM-01 1 57207840 57207840 T C C1orf168 Missense_Mutation p.K533R 0.46 deleterious(0.03) possibly_damaging(0.474) TCGA-5N-A9KM-01 1 89729558 89729558 A G GBP5 Missense_Mutation p.L408S 0.32 tolerated(0.15) probably_damaging(0.998) TCGA-5N-A9KM-01 20 35835680 35835680 A C RPN2 Missense_Mutation p.Q232P 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-5N-A9KM-01 20 35835681 35835681 G A RPN2 Silent p.Q232Q 0.16 TCGA-5N-A9KM-01 20 4679868 4679868 T C PRNP Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-5N-A9KM-01 20 58416515 58416515 C T PHACTR3 Silent p.Y504Y 0.54 TCGA-5N-A9KM-01 20 61513097 61513097 C T DIDO1 Missense_Mutation p.R1404Q 0.26 benign(0.013) TCGA-5N-A9KM-01 20 62321110 62321110 C T RTEL1 Missense_Mutation p.S702F 0.24 deleterious(0) probably_damaging(0.974) TCGA-5N-A9KM-01 20 62597637 62597637 G A ZNF512B Silent p.S297S 0.51 TCGA-5N-A9KM-01 21 11014939 11014939 T A TPTE Intron 0.25 TCGA-5N-A9KM-01 21 32127638 32127638 T C KRTAP21-1 Missense_Mutation p.Y20C 0.40 tolerated_low_confidence(0.14) unknown(0) TCGA-5N-A9KM-01 21 38309072 38309072 T C HLCS Missense_Mutation p.I225V 0.40 tolerated(0.43) benign(0.002) TCGA-5N-A9KM-01 21 47985664 47985664 C T DIP2A Silent p.Y1401Y 0.25 TCGA-5N-A9KM-01 22 22892644 22892644 G A PRAME Nonsense_Mutation p.Q153* 0.40 TCGA-5N-A9KM-01 22 27008087 27008087 A G CRYBB1 Missense_Mutation p.L83P 0.19 deleterious(0) possibly_damaging(0.739) TCGA-5N-A9KM-01 22 30415619 30415619 A G MTMR3 Silent p.G657G 0.36 TCGA-5N-A9KM-01 22 50582551 50582551 G A MOV10L1 Missense_Mutation p.R795Q 0.42 deleterious(0) probably_damaging(0.991) TCGA-5N-A9KM-01 2 111428123 111428123 C T BUB1 Missense_Mutation p.E149K 0.27 tolerated(0.45) benign(0.005) TCGA-5N-A9KM-01 2 112786100 112786100 G C MERTK Missense_Mutation p.G887R 0.41 tolerated(0.07) benign(0.02) TCGA-5N-A9KM-01 2 11738889 11738889 G A GREB1 Missense_Mutation p.A746T 0.31 tolerated(0.27) possibly_damaging(0.665) TCGA-5N-A9KM-01 2 137814069 137814069 G T THSD7B Silent p.G73G 0.30 TCGA-5N-A9KM-01 2 139316858 139316858 C T SPOPL Missense_Mutation p.S222F 0.36 deleterious(0) probably_damaging(1) TCGA-5N-A9KM-01 2 139316861 139316861 C T SPOPL Missense_Mutation p.P223L 0.39 deleterious(0) benign(0.027) TCGA-5N-A9KM-01 2 162891779 162891780 - A DPP4 Frame_Shift_Ins p.L223Ffs*7 0.43 TCGA-5N-A9KM-01 2 168099889 168099889 T C XIRP2 Silent p.L663L 0.44 TCGA-5N-A9KM-01 2 168115097 168115097 A G XIRP2 3'UTR 0.36 TCGA-5N-A9KM-01 2 170488321 170488321 G T PPIG Missense_Mutation p.Q269H 0.29 tolerated(0.24) unknown(0) TCGA-5N-A9KM-01 2 172641906 172641906 A T SLC25A12 Missense_Mutation p.Y639N 0.33 deleterious(0) possibly_damaging(0.771) TCGA-5N-A9KM-01 2 179399246 179399246 A G TTN Silent p.Y34032Y 0.29 TCGA-5N-A9KM-01 2 179432647 179432647 A T TTN Missense_Mutation p.V26071D 0.27 TCGA-5N-A9KM-01 2 179634406 179634406 G A TTN Missense_Mutation p.P2968S 0.27 TCGA-5N-A9KM-01 2 183826886 183826886 C T NCKAP1 Splice_Site p.X633_splice 0.27 TCGA-5N-A9KM-01 2 190530771 190530771 A G ASNSD1 5'UTR 0.46 TCGA-5N-A9KM-01 2 191301486 191301486 C G MFSD6 Nonsense_Mutation p.S244* 0.21 TCGA-5N-A9KM-01 2 240981243 240981243 A G PRR21 Missense_Mutation p.I386T 0.54 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-5N-A9KM-01 2 29917794 29917794 G A ALK Missense_Mutation p.R292C 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.861) TCGA-5N-A9KM-01 2 77745888 77745888 T A LRRTM4 Missense_Mutation p.E369D 0.41 tolerated(0.48) benign(0.004) TCGA-5N-A9KM-01 2 86302212 86302212 C T POLR1A Missense_Mutation p.V518M 0.15 deleterious(0) probably_damaging(0.975) TCGA-5N-A9KM-01 2 86354347 86354347 C G PTCD3 Missense_Mutation p.L339V 0.42 deleterious(0) possibly_damaging(0.718) TCGA-5N-A9KM-01 2 89417282 89417282 G T IGKV1-17 Silent p.L9L 0.22 TCGA-5N-A9KM-01 3 129278521 129278521 G C PLXND1 Missense_Mutation p.Q1747E 0.34 deleterious(0) probably_damaging(0.998) TCGA-5N-A9KM-01 3 185639813 185639813 C T TRA2B Missense_Mutation p.M208I 0.38 deleterious(0.01) benign(0.251) TCGA-5N-A9KM-01 3 194331644 194331644 C T TMEM44 Splice_Site p.X386_splice 0.43 TCGA-5N-A9KM-01 3 32769359 32769362 GGGG - CNOT10 Frame_Shift_Del 0.76 TCGA-5N-A9KM-01 3 61975326 61975326 C T PTPRG Missense_Mutation p.T73M 0.21 deleterious(0.01) probably_damaging(0.919) TCGA-5N-A9KM-01 4 128732669 128732669 A G HSPA4L Missense_Mutation p.I486V 0.33 tolerated(0.43) benign(0.008) TCGA-5N-A9KM-01 4 16900019 16900019 G A LDB2 Silent p.Y30Y 0.35 TCGA-5N-A9KM-01 4 2065500 2065500 G A NAT8L Nonsense_Mutation p.W185* 0.33 TCGA-5N-A9KM-01 4 55155224 55155224 C G PDGFRA Silent p.P941P 0.43 TCGA-5N-A9KM-01 4 62758556 62758556 G A LPHN3 Missense_Mutation p.A487T 0.42 tolerated(0.54) benign(0.003) TCGA-5N-A9KM-01 4 71114806 71114806 C A CSN3 Missense_Mutation p.T60N 0.36 tolerated(0.27) possibly_damaging(0.728) TCGA-5N-A9KM-01 4 72215627 72215627 A G SLC4A4 Splice_Site p.X130_splice 0.40 TCGA-5N-A9KM-01 4 76956236 76956236 T A CXCL11 Silent p.L75L 0.21 TCGA-5N-A9KM-01 4 88344116 88344116 C G NUDT9 Missense_Mutation p.A20G 0.29 tolerated(0.12) benign(0.146) TCGA-5N-A9KM-01 4 88731768 88731768 A G IBSP Missense_Mutation p.N86S 0.43 tolerated(0.78) probably_damaging(0.999) TCGA-5N-A9KM-01 4 94436498 94436498 G A GRID2 Missense_Mutation p.R710Q 0.36 tolerated(0.1) benign(0.281) TCGA-5N-A9KM-01 4 9784853 9784853 C A DRD5 Silent p.I400I 0.32 TCGA-5N-A9KM-01 5 102326096 102326096 G T PAM Missense_Mutation p.W535L 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-5N-A9KM-01 5 128863479 128863479 G A ADAMTS19 Silent p.Q369Q 0.30 TCGA-5N-A9KM-01 5 140188545 140188545 G A PCDHA4 Silent p.V591V 0.31 TCGA-5N-A9KM-01 5 140348367 140348367 C T PCDHAC2 Silent p.A672A 0.21 TCGA-5N-A9KM-01 5 140558077 140558077 T A PCDHB8 Silent p.P154P 0.17 TCGA-5N-A9KM-01 5 140626777 140626777 A G PCDHB15 Missense_Mutation p.E544G 0.31 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-5N-A9KM-01 5 151138104 151138104 C T ATOX1 Intron 0.47 TCGA-5N-A9KM-01 5 153144161 153144161 T A GRIA1 Missense_Mutation p.L674Q 0.27 deleterious(0) probably_damaging(0.988) TCGA-5N-A9KM-01 5 154199987 154199987 A G FAXDC2 Silent p.H297H 0.38 TCGA-5N-A9KM-01 5 16779716 16779716 T A MYO10 Missense_Mutation p.N290Y 0.21 deleterious(0.01) possibly_damaging(0.845) TCGA-5N-A9KM-01 5 16779717 16779717 C T MYO10 Silent p.L289L 0.21 TCGA-5N-A9KM-01 5 24498512 24498512 C A CDH10 Missense_Mutation p.G504W 0.35 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 5 3600761 3600761 C T IRX1 Nonsense_Mutation p.Q451* 0.34 TCGA-5N-A9KM-01 5 36122392 36122392 A G LMBRD2 Silent p.N370N 0.14 TCGA-5N-A9KM-01 6 111336990 111336990 G T RPF2 Missense_Mutation p.R176L 0.34 deleterious(0) benign(0.293) TCGA-5N-A9KM-01 6 112438999 112438999 C T LAMA4 Missense_Mutation p.E1642K 0.32 deleterious(0) probably_damaging(0.998) TCGA-5N-A9KM-01 6 131979528 131979528 G A ENPP3 Nonsense_Mutation p.W177* 0.36 TCGA-5N-A9KM-01 6 133827306 133827306 T C EYA4 Silent p.D418D 0.31 TCGA-5N-A9KM-01 6 133836458 133836458 G A EYA4 Splice_Site p.X501_splice 0.36 TCGA-5N-A9KM-01 6 160328442 160328442 T G MAS1 Missense_Mutation p.V152G 0.37 deleterious(0) probably_damaging(0.991) TCGA-5N-A9KM-01 6 25581183 25581183 A G LRRC16A Missense_Mutation p.H925R 0.31 tolerated(0.26) possibly_damaging(0.461) TCGA-5N-A9KM-01 6 25855381 25855381 A G SLC17A3 Missense_Mutation p.Y235H 0.44 deleterious(0) probably_damaging(0.996) TCGA-5N-A9KM-01 6 29364618 29364618 A G OR12D2 Missense_Mutation p.I48V 0.35 tolerated(0.28) benign(0.002) TCGA-5N-A9KM-01 6 30131570 30131570 C T TRIM15 Missense_Mutation p.R37W 0.32 tolerated(0.08) benign(0.005) TCGA-5N-A9KM-01 6 31748810 31748810 C T VARS Missense_Mutation p.G879R 0.41 deleterious(0) probably_damaging(1) TCGA-5N-A9KM-01 6 31842234 31842234 C G SLC44A4 Intron 0.30 TCGA-5N-A9KM-01 6 36651911 36651911 C - CDKN1A Frame_Shift_Del p.P12Hfs*19 0.45 TCGA-5N-A9KM-01 6 44116562 44116562 G C TMEM63B Missense_Mutation p.W431C 0.43 deleterious(0) probably_damaging(0.975) TCGA-5N-A9KM-01 6 44275017 44275017 C A AARS2 Missense_Mutation p.D337Y 0.40 deleterious(0) probably_damaging(0.977) TCGA-5N-A9KM-01 6 56919191 56919191 G C KIAA1586 Missense_Mutation p.D632H 0.30 tolerated(0.06) possibly_damaging(0.712) TCGA-5N-A9KM-01 6 70990708 70990708 G A COL9A1 Missense_Mutation p.P304L 0.36 unknown(0) TCGA-5N-A9KM-01 6 79655867 79655867 A G PHIP Missense_Mutation p.I1494T 0.36 tolerated_low_confidence(0.2) benign(0.004) TCGA-5N-A9KM-01 6 87955361 87955361 A G ZNF292 Missense_Mutation p.E340G 0.33 deleterious(0) probably_damaging(0.996) TCGA-5N-A9KM-01 6 89981380 89981380 C A GABRR2 Silent p.V94V 0.25 TCGA-5N-A9KM-01 7 100692214 100692214 C T MUC17 Silent p.S4208S 0.35 TCGA-5N-A9KM-01 7 100732228 100732228 G A TRIM56 Silent p.P545P 0.41 TCGA-5N-A9KM-01 7 107820864 107820864 T C NRCAM Missense_Mutation p.Y885C 0.49 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 7 134618604 134618604 G A CALD1 Missense_Mutation p.E362K 0.50 tolerated_low_confidence(0.29) unknown(0) TCGA-5N-A9KM-01 7 143141184 143141184 G A TAS2R60 Missense_Mutation p.M213I 0.32 tolerated(0.46) benign(0.123) TCGA-5N-A9KM-01 7 156476645 156476645 T C LMBR1 3'UTR 0.15 TCGA-5N-A9KM-01 7 20795242 20795242 C T ABCB5 Nonsense_Mutation p.Q1257* 0.24 TCGA-5N-A9KM-01 7 2317883 2317883 G A SNX8 Missense_Mutation p.P51L 0.53 tolerated_low_confidence(0.06) benign(0.081) TCGA-5N-A9KM-01 7 31904579 31904579 G A PDE1C Missense_Mutation p.L303F 0.45 tolerated(0.13) possibly_damaging(0.521) TCGA-5N-A9KM-01 7 62752308 62752308 A G ZNF733P RNA 0.28 TCGA-5N-A9KM-01 7 95457372 95457372 C A DYNC1I1 Silent p.T123T 0.28 TCGA-5N-A9KM-01 8 102570763 102570763 C T GRHL2 Missense_Mutation p.S134F 0.34 tolerated(0.14) benign(0.057) TCGA-5N-A9KM-01 8 110477363 110477363 G - PKHD1L1 Frame_Shift_Del p.G2769Vfs*27 0.23 TCGA-5N-A9KM-01 8 121282335 121282335 T C COL14A1 Silent p.D1045D 0.31 TCGA-5N-A9KM-01 8 143745901 143745901 C T JRK RNA 0.40 TCGA-5N-A9KM-01 8 146156421 146156421 T A ZNF16 Silent p.R584R 0.30 TCGA-5N-A9KM-01 8 30699658 30699658 C T TEX15 Silent p.T2292T 0.26 TCGA-5N-A9KM-01 8 72935149 72935149 C G TRPA1 Missense_Mutation p.E1118Q 0.31 tolerated_low_confidence(0.14) benign(0.032) TCGA-5N-A9KM-01 8 77620255 77620255 G A ZFHX4 Missense_Mutation p.R1022K 0.40 benign(0.14) TCGA-5N-A9KM-01 9 135782758 135782758 C T TSC1 Splice_Site p.X422_splice 0.35 TCGA-5N-A9KM-01 9 27949857 27949857 G A LINGO2 Silent p.H271H 0.39 TCGA-5N-A9KM-01 9 34493276 34493276 A G DNAI1 Missense_Mutation p.K256E 0.35 tolerated(0.15) benign(0.017) TCGA-5N-A9KM-01 9 8317713 8317713 C G PTPRD 3'UTR 0.79 TCGA-5N-A9KM-01 X 100653405 100653405 C A GLA Missense_Mutation p.A318S 0.36 tolerated(0.12) benign(0.044) TCGA-5N-A9KM-01 X 107084615 107084615 G T MID2 Missense_Mutation p.K240N 0.30 deleterious(0.04) possibly_damaging(0.663) TCGA-5N-A9KM-01 X 117722120 117722120 G A DOCK11 Missense_Mutation p.V606M 0.33 deleterious(0) possibly_damaging(0.55) TCGA-5N-A9KM-01 X 119438237 119438237 A C TMEM255A Missense_Mutation p.N56K 0.40 deleterious(0) probably_damaging(0.999) TCGA-5N-A9KM-01 X 120182008 120182008 G C GLUD2 Missense_Mutation p.S157T 0.32 tolerated(0.2) benign(0.002) TCGA-5N-A9KM-01 X 122748016 122748016 G A THOC2 Missense_Mutation p.P1446S 0.33 tolerated_low_confidence(0.64) benign(0.003) TCGA-5N-A9KM-01 X 128963081 128963081 G T ZDHHC9 Silent p.I68I 0.43 TCGA-5N-A9KM-01 X 130411154 130411154 G T IGSF1 Silent p.V794V 0.29 TCGA-5N-A9KM-01 X 130415842 130415842 G A IGSF1 Silent p.C441C 0.20 TCGA-5N-A9KM-01 X 133700499 133700499 G T PLAC1 Missense_Mutation p.Q72K 0.34 tolerated(0.08) benign(0.063) TCGA-5N-A9KM-01 X 135754203 135754203 T C ARHGEF6 Missense_Mutation p.N704S 0.31 tolerated(0.1) probably_damaging(0.979) TCGA-5N-A9KM-01 X 142718376 142718376 C A SLITRK4 Silent p.L183L 0.30 TCGA-5N-A9KM-01 X 14627313 14627313 G T GLRA2 Missense_Mutation p.A306S 0.33 tolerated(0.23) possibly_damaging(0.731) TCGA-5N-A9KM-01 X 153070102 153070102 G A PDZD4 Missense_Mutation p.A339V 0.12 tolerated(0.32) benign(0.374) TCGA-5N-A9KM-01 X 153580933 153580933 G A FLNA Silent p.L2164L 0.36 TCGA-5N-A9KM-01 X 153670977 153670977 G A GDI1 Missense_Mutation p.M434I 0.28 tolerated(0.51) benign(0.002) TCGA-5N-A9KM-01 X 154158231 154158231 A G F8 Silent p.N1278N 0.32 TCGA-5N-A9KM-01 X 154294196 154294196 C A MTCP1 Silent p.V30V 0.29 TCGA-5N-A9KM-01 X 29973740 29973740 G A IL1RAPL1 Missense_Mutation p.V632I 0.31 tolerated_low_confidence(0.36) benign(0.001) TCGA-5N-A9KM-01 X 30671556 30671556 C T GK 5'UTR 0.55 TCGA-5N-A9KM-01 X 32591714 32591714 A T DMD Missense_Mutation p.V582E 0.20 benign(0.395) TCGA-5N-A9KM-01 X 35820731 35820731 T C MAGEB16 Silent p.L140L 0.63 TCGA-5N-A9KM-01 X 36007619 36007619 G T CXorf22 Missense_Mutation p.G966V 0.32 tolerated_low_confidence(0.13) benign(0.047) TCGA-5N-A9KM-01 X 39931887 39931887 A G BCOR Silent p.P904P 0.42 TCGA-5N-A9KM-01 X 44703342 44703342 C T DUSP21 5'UTR 0.43 TCGA-5N-A9KM-01 X 48652249 48652249 G T GATA1 Missense_Mutation p.R307L 0.38 deleterious(0.01) probably_damaging(0.931) TCGA-5N-A9KM-01 X 49040203 49040203 C T PRICKLE3 Missense_Mutation p.G99D 0.22 deleterious(0) probably_damaging(0.979) TCGA-5N-A9KM-01 X 50054197 50054197 G A CCNB3 Missense_Mutation p.E1010K 0.31 tolerated(1) benign(0.305) TCGA-5N-A9KM-01 X 53575138 53575138 G A HUWE1 Nonsense_Mutation p.Q3378* 0.48 TCGA-5N-A9KM-01 X 57935931 57935931 G A ZXDA Silent p.G308G 0.69 TCGA-5N-A9KM-01 X 5827106 5827106 T C NLGN4X Missense_Mutation p.H267R 0.36 tolerated(0.14) probably_damaging(0.943) TCGA-5N-A9KM-01 X 67937492 67937492 C T STARD8 Missense_Mutation p.R246C 0.26 tolerated(0.13) benign(0.004) TCGA-5N-A9KM-01 X 69508314 69508314 C G PDZD11 Missense_Mutation p.R46P 0.39 deleterious(0.04) benign(0.002) TCGA-5N-A9KM-01 X 69649648 69649648 C T GDPD2 Intron 0.46 TCGA-5N-A9KM-01 X 70514147 70514147 G T NONO Missense_Mutation p.R140L 0.27 deleterious(0) possibly_damaging(0.874) TCGA-5N-A9KM-01 X 7268218 7268218 G A STS Silent p.K556K 0.51 TCGA-5N-A9KM-01 X 73071873 73071873 C A XIST RNA 0.44 TCGA-5N-A9KM-01 X 75648704 75648704 T C MAGEE1 Silent p.S127S 0.41 TCGA-5N-A9KM-01 X 86877261 86877261 T A KLHL4 Silent p.A325A 0.41 TCGA-5N-A9KM-01 X 86887267 86887267 C A KLHL4 Missense_Mutation p.T461N 0.21 tolerated(0.75) possibly_damaging(0.667) TCGA-5N-A9KM-01 X 91134184 91134184 C T PCDH11X Missense_Mutation p.S982F 0.35 deleterious(0) probably_damaging(1) TCGA-BL-A0C8-01 10 17813344 17813344 A G TMEM236 Silent p.T98T 0.18 TCGA-BL-A0C8-01 10 72520559 72520559 G C ADAMTS14 Missense_Mutation p.D1211H 0.29 deleterious_low_confidence(0.02) benign(0.229) TCGA-BL-A0C8-01 10 76285071 76285071 G A ADK Missense_Mutation p.E205K 0.28 tolerated(0.2) benign(0.026) TCGA-BL-A0C8-01 11 105774631 105774631 G C GRIA4 Missense_Mutation p.G326A 0.42 deleterious(0.05) benign(0.041) TCGA-BL-A0C8-01 11 64123092 64123092 A G CCDC88B Missense_Mutation p.N1456S 0.22 tolerated(0.93) benign(0) TCGA-BL-A0C8-01 12 106712243 106712243 G A TCP11L2 Splice_Site p.X138_splice 0.05 TCGA-BL-A0C8-01 12 110906002 110906002 G A GPN3 Intron 0.21 TCGA-BL-A0C8-01 12 113629658 113629658 G A RITA1 3'UTR 0.22 TCGA-BL-A0C8-01 12 122825944 122825944 C T CLIP1 Missense_Mutation p.E603K 0.06 tolerated(0.06) probably_damaging(0.984) TCGA-BL-A0C8-01 12 123342728 123342728 C T HIP1R Missense_Mutation p.A632V 0.55 deleterious(0) benign(0.025) TCGA-BL-A0C8-01 12 49888683 49888683 G A SPATS2 Missense_Mutation p.E142K 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-BL-A0C8-01 12 49888713 49888713 G A SPATS2 Missense_Mutation p.E152K 0.27 tolerated(0.09) possibly_damaging(0.814) TCGA-BL-A0C8-01 12 53074144 53074144 G C KRT1 5'UTR 0.17 TCGA-BL-A0C8-01 12 55863607 55863607 C T OR6C70 Missense_Mutation p.G106R 0.13 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-BL-A0C8-01 12 86373384 86373384 A T MGAT4C Missense_Mutation p.S374T 0.10 tolerated(0.54) benign(0) TCGA-BL-A0C8-01 13 23929791 23929791 G A SACS Silent p.V320V 0.18 TCGA-BL-A0C8-01 13 32914782 32914782 C T BRCA2 Missense_Mutation p.T2097M 0.24 deleterious(0.01) possibly_damaging(0.901) TCGA-BL-A0C8-01 13 53624617 53624617 T G OLFM4 Missense_Mutation p.L415R 0.25 deleterious(0) probably_damaging(0.998) TCGA-BL-A0C8-01 14 24684871 24684872 - TC MDP1 Intron 0.56 TCGA-BL-A0C8-01 14 64514796 64514796 C T SYNE2 Missense_Mutation p.R2434W 0.26 possibly_damaging(0.599) TCGA-BL-A0C8-01 14 64519446 64519446 G C SYNE2 Missense_Mutation p.E2939Q 0.25 benign(0.039) TCGA-BL-A0C8-01 14 65253698 65253698 C T SPTB Silent p.R995R 0.19 TCGA-BL-A0C8-01 14 70490103 70490103 G T SMOC1 Silent p.L410L 0.46 TCGA-BL-A0C8-01 14 74194193 74194193 C T ELMSAN1 Silent p.V710V 0.12 TCGA-BL-A0C8-01 14 77978511 77978511 G A SPTLC2 3'UTR 0.28 TCGA-BL-A0C8-01 15 31795993 31795993 C T OTUD7A Missense_Mutation p.E301K 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-BL-A0C8-01 15 34105682 34105682 G A RYR3 Silent p.L3468L 0.26 TCGA-BL-A0C8-01 15 54306223 54306223 C T UNC13C Nonsense_Mutation p.R375* 0.24 TCGA-BL-A0C8-01 15 54306931 54306931 C T UNC13C Nonsense_Mutation p.Q611* 0.49 TCGA-BL-A0C8-01 15 64446670 64446670 C G SNX22 Missense_Mutation p.A182G 0.13 tolerated_low_confidence(0.09) benign(0.006) TCGA-BL-A0C8-01 15 72338071 72338071 T C MYO9A Silent p.V278V 0.47 TCGA-BL-A0C8-01 15 91448546 91448546 G C MAN2A2 Missense_Mutation p.E66D 0.49 deleterious(0.02) benign(0.007) TCGA-BL-A0C8-01 16 22385609 22385609 C G CDR2 Missense_Mutation p.E8Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-BL-A0C8-01 16 28997204 28997204 G A LAT Missense_Mutation p.R89Q 0.37 tolerated_low_confidence(0.22) benign(0.219) TCGA-BL-A0C8-01 16 72984605 72984605 G A ZFHX3 Silent p.T993T 0.41 TCGA-BL-A0C8-01 17 10411687 10411687 C T MYH1 Silent p.A630A 0.43 TCGA-BL-A0C8-01 17 11622799 11622799 G T DNAH9 Missense_Mutation p.D1901Y 0.09 probably_damaging(0.982) TCGA-BL-A0C8-01 17 34893433 34893433 C G PIGW Silent p.L161L 0.13 TCGA-BL-A0C8-01 17 40837383 40837383 C T CNTNAP1 Silent p.G220G 0.65 TCGA-BL-A0C8-01 17 41342744 41342744 C G NBR1 Missense_Mutation p.H272D 0.55 tolerated(0.21) benign(0.042) TCGA-BL-A0C8-01 17 66366656 66366656 A G ARSG Missense_Mutation p.T325A 0.05 tolerated(0.6) benign(0.005) TCGA-BL-A0C8-01 18 59949606 59949606 C G KIAA1468 Missense_Mutation p.S1061C 0.41 tolerated(0.1) benign(0.159) TCGA-BL-A0C8-01 19 11224428 11224428 C T LDLR Missense_Mutation p.P526S 0.41 deleterious(0) probably_damaging(1) TCGA-BL-A0C8-01 19 1754836 1754836 C A ONECUT3 Nonsense_Mutation p.S392* 0.41 TCGA-BL-A0C8-01 19 36431511 36431517 CCAGCTG - LRFN3 Frame_Shift_Del p.T395Mfs*37 0.61 TCGA-BL-A0C8-01 19 40408406 40408406 A G FCGBP Missense_Mutation p.V1478A 0.16 possibly_damaging(0.9) TCGA-BL-A0C8-01 19 42880437 42880437 G A MEGF8 Missense_Mutation p.R2616H 0.13 tolerated(0.07) possibly_damaging(0.716) TCGA-BL-A0C8-01 19 44169567 44169567 C G PLAUR Missense_Mutation p.E71Q 0.22 tolerated(0.21) benign(0.032) TCGA-BL-A0C8-01 19 44169588 44169588 C G PLAUR Missense_Mutation p.E64Q 0.16 tolerated(0.26) benign(0.259) TCGA-BL-A0C8-01 19 47570445 47570445 G A ZC3H4 Missense_Mutation p.P1027L 0.11 unknown(0) TCGA-BL-A0C8-01 19 50031841 50031842 - C RCN3 Frame_Shift_Ins p.L40Pfs*7 0.26 TCGA-BL-A0C8-01 1 145534100 145534100 C G ITGA10 Silent p.L535L 0.23 TCGA-BL-A0C8-01 1 153362976 153362976 G A S100A8 Silent p.I12I 0.21 TCGA-BL-A0C8-01 1 155226117 155226117 C T SCAMP3 Missense_Mutation p.A331T 0.24 deleterious(0.03) unknown(0) TCGA-BL-A0C8-01 1 156281973 156281973 C G CCT3 Silent p.L338L 0.31 TCGA-BL-A0C8-01 1 156647053 156647053 C G NES Missense_Mutation p.E2Q 0.21 deleterious(0) possibly_damaging(0.886) TCGA-BL-A0C8-01 1 156884482 156884483 - C PEAR1 Frame_Shift_Ins p.G1005Rfs*4 0.23 TCGA-BL-A0C8-01 1 161047356 161047356 G A PVRL4 Missense_Mutation p.S206L 0.07 deleterious(0) probably_damaging(0.968) TCGA-BL-A0C8-01 1 171154946 171154946 G C FMO2 Missense_Mutation p.E32Q 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-BL-A0C8-01 1 172558229 172558229 A T SUCO Missense_Mutation p.Q663L 0.11 tolerated(0.13) benign(0.001) TCGA-BL-A0C8-01 1 183209495 183209495 C T LAMC2 Silent p.L1099L 0.11 TCGA-BL-A0C8-01 1 19549914 19549914 G A EMC1 Silent p.I784I 0.04 TCGA-BL-A0C8-01 1 21044183 21044183 A C KIF17 Missense_Mutation p.V6G 0.44 deleterious(0) probably_damaging(0.909) TCGA-BL-A0C8-01 1 224492852 224492852 G C NVL Missense_Mutation p.S211C 0.32 deleterious(0) benign(0.126) TCGA-BL-A0C8-01 1 243471361 243471361 C G SDCCAG8 Missense_Mutation p.L271V 0.48 tolerated(0.42) benign(0.024) TCGA-BL-A0C8-01 1 248551039 248551039 G A OR2T6 Missense_Mutation p.V44I 0.16 tolerated(0.57) benign(0.003) TCGA-BL-A0C8-01 1 27099309 27099309 C - ARID1A Frame_Shift_Del p.S1182Rfs*24 0.52 TCGA-BL-A0C8-01 1 40766912 40766912 C G COL9A2 Missense_Mutation p.G671A 0.49 tolerated(0.48) benign(0.086) TCGA-BL-A0C8-01 1 44474107 44474107 G A SLC6A9 Missense_Mutation p.R243W 0.20 tolerated(0.1) benign(0) TCGA-BL-A0C8-01 1 54395807 54395807 G A HSPB11 Missense_Mutation p.T37M 0.41 deleterious(0) probably_damaging(0.981) TCGA-BL-A0C8-01 1 64669723 64669723 C T UBE2U 5'UTR 0.09 TCGA-BL-A0C8-01 20 23351021 23351021 G C GZF1 Silent p.L693L 0.17 TCGA-BL-A0C8-01 20 36012573 36012573 G A SRC Missense_Mutation p.S6N 0.34 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-BL-A0C8-01 20 39986944 39986944 C T LPIN3 Silent p.L754L 0.43 TCGA-BL-A0C8-01 20 44579219 44579219 G C ZNF335 Missense_Mutation p.H1069D 0.16 deleterious(0) probably_damaging(1) TCGA-BL-A0C8-01 20 61477003 61477004 - C TCFL5 Intron 0.23 TCGA-BL-A0C8-01 20 61490866 61490866 A C TCFL5 Missense_Mutation p.S282A 0.11 tolerated(0.16) benign(0.065) TCGA-BL-A0C8-01 20 62724217 62724217 C T OPRL1 Silent p.L48L 0.43 TCGA-BL-A0C8-01 21 46078007 46078007 C T KRTAP12-3 Silent p.P37P 0.06 TCGA-BL-A0C8-01 22 32889255 32889255 G A FBXO7 Silent p.L377L 0.11 TCGA-BL-A0C8-01 2 128345985 128345985 G A MYO7B Missense_Mutation p.R570Q 0.11 deleterious(0) possibly_damaging(0.757) TCGA-BL-A0C8-01 2 160033027 160033027 C A TANC1 Missense_Mutation p.Q634K 0.15 tolerated(0.22) benign(0.008) TCGA-BL-A0C8-01 2 163279802 163279802 A G KCNH7 Intron 0.07 TCGA-BL-A0C8-01 2 164467360 164467361 - A FIGN Frame_Shift_Ins p.D328* 0.48 TCGA-BL-A0C8-01 2 175624213 175624213 C G CHRNA1 Intron 0.25 TCGA-BL-A0C8-01 2 182359492 182359492 G A ITGA4 Missense_Mutation p.G431E 0.06 deleterious(0) probably_damaging(1) TCGA-BL-A0C8-01 2 182359515 182359515 G A ITGA4 Missense_Mutation p.D439N 0.07 deleterious(0) probably_damaging(1) TCGA-BL-A0C8-01 2 190719590 190719590 A G PMS1 Missense_Mutation p.N531S 0.49 tolerated(0.37) benign(0.009) TCGA-BL-A0C8-01 2 198265453 198265453 C T SF3B1 Missense_Mutation p.E902K 0.64 deleterious(0.01) probably_damaging(0.926) TCGA-BL-A0C8-01 2 200137185 200137185 G A SATB2 Nonsense_Mutation p.Q651* 0.14 TCGA-BL-A0C8-01 2 219290520 219290520 C T VIL1 Silent p.F111F 0.54 TCGA-BL-A0C8-01 2 220034109 220034109 G C SLC23A3 Missense_Mutation p.P114A 0.53 tolerated(0.07) probably_damaging(0.951) TCGA-BL-A0C8-01 2 241536312 241536312 C T CAPN10 Missense_Mutation p.R566W 0.30 deleterious(0) possibly_damaging(0.67) TCGA-BL-A0C8-01 2 24253912 24253912 G C C2orf44 Missense_Mutation p.S686C 0.20 deleterious(0.04) benign(0.139) TCGA-BL-A0C8-01 2 61415533 61415533 C G USP34 Missense_Mutation p.E3449Q 0.23 deleterious_low_confidence(0.03) benign(0.019) TCGA-BL-A0C8-01 2 87140980 87140980 G A RGPD1 5'Flank 0.19 TCGA-BL-A0C8-01 3 145917695 145917695 G A PLSCR4 Missense_Mutation p.R177W 0.15 deleterious(0) probably_damaging(0.998) TCGA-BL-A0C8-01 3 184009213 184009213 G A ECE2 Missense_Mutation p.V821M 0.18 deleterious(0.02) probably_damaging(0.934) TCGA-BL-A0C8-01 3 195477929 195477929 C T MUC4 Silent p.S5234S 0.06 TCGA-BL-A0C8-01 3 19938244 19938244 G A EFHB Missense_Mutation p.H554Y 0.17 deleterious(0.05) possibly_damaging(0.514) TCGA-BL-A0C8-01 3 20019815 20019815 A C RAB5A Missense_Mutation p.Y151S 0.43 deleterious(0) probably_damaging(0.987) TCGA-BL-A0C8-01 3 49135633 49135633 G A QARS Silent p.L715L 0.09 TCGA-BL-A0C8-01 3 49721756 49721756 C T MST1 Silent p.G669G 0.31 TCGA-BL-A0C8-01 3 49736242 49736242 C G RNF123 Missense_Mutation p.L209V 0.37 tolerated(0.07) benign(0.209) TCGA-BL-A0C8-01 3 49756064 49756064 G C AMIGO3 Missense_Mutation p.L279V 0.36 tolerated(0.53) benign(0.002) TCGA-BL-A0C8-01 3 50231195 50231195 C T GNAT1 Silent p.S153S 0.46 TCGA-BL-A0C8-01 3 50402325 50402325 G T CACNA2D2 Missense_Mutation p.N1102K 0.39 deleterious(0) benign(0.345) TCGA-BL-A0C8-01 3 57893702 57893705 AACA TCT SLMAP Frame_Shift_Del p.R497Sfs*99 0.28 TCGA-BL-A0C8-01 4 155160322 155160322 C T DCHS2 Missense_Mutation p.G2043S 0.19 deleterious(0) probably_damaging(0.993) TCGA-BL-A0C8-01 4 156634276 156634276 C G GUCY1A3 Missense_Mutation p.I371M 0.35 deleterious(0) possibly_damaging(0.839) TCGA-BL-A0C8-01 4 164534483 164534483 G T MARCH1 Silent p.S75S 0.22 TCGA-BL-A0C8-01 4 175158643 175158643 G A FBXO8 Missense_Mutation p.R294C 0.32 deleterious(0.02) probably_damaging(0.98) TCGA-BL-A0C8-01 4 183673057 183673058 - G TENM3 Frame_Shift_Ins p.A1247Gfs*6 0.22 TCGA-BL-A0C8-01 4 2130948 2130948 C A POLN Missense_Mutation p.A609S 0.36 tolerated(0.27) benign(0.013) TCGA-BL-A0C8-01 4 3451002 3451002 C T HGFAC Silent p.G608G 0.22 TCGA-BL-A0C8-01 4 47939675 47939675 G A CNGA1 Missense_Mutation p.S348F 0.27 tolerated(0.55) possibly_damaging(0.789) TCGA-BL-A0C8-01 4 76692248 76692248 G C USO1 Missense_Mutation p.L173F 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-BL-A0C8-01 4 79763561 79763561 G T BMP2K Missense_Mutation p.M142I 0.16 deleterious(0.02) possibly_damaging(0.883) TCGA-BL-A0C8-01 5 131607548 131607548 G A PDLIM4 Silent p.P245P 0.12 TCGA-BL-A0C8-01 5 134041037 134041037 C A SEC24A Missense_Mutation p.H821N 0.35 deleterious(0) probably_damaging(0.913) TCGA-BL-A0C8-01 5 134041067 134041067 C T SEC24A Silent p.L831L 0.35 TCGA-BL-A0C8-01 5 13865842 13865842 A G DNAH5 Silent p.Y1430Y 0.13 TCGA-BL-A0C8-01 5 140626865 140626865 C T PCDHB15 Silent p.T573T 0.20 TCGA-BL-A0C8-01 5 140741617 140741617 C T PCDHGB2 Missense_Mutation p.R639C 0.17 deleterious(0) probably_damaging(0.996) TCGA-BL-A0C8-01 5 145895383 145895383 C T GPR151 Silent p.A98A 0.12 TCGA-BL-A0C8-01 5 167689593 167689593 G C TENM2 Missense_Mutation p.Q2701H 0.40 deleterious(0) probably_damaging(0.998) TCGA-BL-A0C8-01 6 118786546 118786546 T C CEP85L 3'UTR 0.42 TCGA-BL-A0C8-01 6 128411080 128411080 G A PTPRK Missense_Mutation p.A407V 0.09 deleterious(0.04) probably_damaging(0.987) TCGA-BL-A0C8-01 6 17675597 17675597 T C NUP153 Missense_Mutation p.I196V 0.09 tolerated(0.54) benign(0.014) TCGA-BL-A0C8-01 6 26250692 26250692 C T HIST1H3F Missense_Mutation p.A48T 0.16 deleterious_low_confidence(0.02) benign(0.14) TCGA-BL-A0C8-01 6 3104493 3104493 G C RIPK1 Missense_Mutation p.R317T 0.57 deleterious(0) possibly_damaging(0.842) TCGA-BL-A0C8-01 6 32169171 32169171 C T NOTCH4 Missense_Mutation p.D1288N 0.42 tolerated(0.49) benign(0.07) TCGA-BL-A0C8-01 6 3850910 3850910 G A FAM50B Missense_Mutation p.A289T 0.32 deleterious(0.01) possibly_damaging(0.906) TCGA-BL-A0C8-01 6 42236137 42236137 G A TRERF1 Nonsense_Mutation p.Q398* 0.54 TCGA-BL-A0C8-01 6 43538336 43538336 C A XPO5 Missense_Mutation p.R175I 0.17 deleterious(0) probably_damaging(0.998) TCGA-BL-A0C8-01 6 50681755 50681755 C T TFAP2D 5'UTR 0.09 TCGA-BL-A0C8-01 6 70386010 70386010 T A LMBRD1 3'UTR 0.62 TCGA-BL-A0C8-01 7 120740100 120740100 G T CPED1 Silent p.S290S 0.31 TCGA-BL-A0C8-01 7 131910975 131910975 C T PLXNA4 Missense_Mutation p.G643S 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-BL-A0C8-01 7 2586960 2586960 G A BRAT1 Nonsense_Mutation p.Q94* 0.33 TCGA-BL-A0C8-01 7 69583197 69583197 G T AUTS2 Missense_Mutation p.S201I 0.15 deleterious(0.03) benign(0.221) TCGA-BL-A0C8-01 7 92157645 92157645 G A PEX1 Silent p.L35L 0.40 TCGA-BL-A0C8-01 7 94047865 94047865 G A COL1A2 Splice_Site p.X675_splice 0.48 TCGA-BL-A0C8-01 8 100847965 100847973 AGGTCAGTG - VPS13B Splice_Site p.X3339_splice 0.36 TCGA-BL-A0C8-01 9 101258739 101258739 C T GABBR2 Missense_Mutation p.E230K 0.12 tolerated(0.12) probably_damaging(0.978) TCGA-BL-A0C8-01 9 111679867 111679867 T C IKBKAP Missense_Mutation p.H275R 0.08 deleterious(0.04) probably_damaging(1) TCGA-BL-A0C8-01 9 114338695 114338695 G C PTGR1 Intron 0.29 TCGA-BL-A0C8-01 9 115759604 115759604 C G ZNF883 RNA 0.38 TCGA-BL-A0C8-01 9 116931561 116931561 A G COL27A1 Missense_Mutation p.S576G 0.11 unknown(0) TCGA-BL-A0C8-01 9 131860642 131860642 T C CRAT Missense_Mutation p.Q405R 0.20 tolerated(0.16) benign(0.008) TCGA-BL-A0C8-01 9 136211045 136211045 G C MED22 Silent p.L116L 0.45 TCGA-BL-A0C8-01 9 139702037 139702037 C T CCDC183 Silent p.F500F 0.30 TCGA-BL-A0C8-01 9 140109624 140109624 G A NDOR1 Silent p.P381P 0.40 TCGA-BL-A0C8-01 9 140707963 140707963 G A EHMT1 Missense_Mutation p.R1054K 0.26 tolerated(0.15) possibly_damaging(0.577) TCGA-BL-A0C8-01 9 32544237 32544237 C T TOPORS Missense_Mutation p.D96N 0.22 deleterious(0.02) possibly_damaging(0.764) TCGA-BL-A0C8-01 9 32544239 32544239 G A TOPORS Missense_Mutation p.A95V 0.22 tolerated(0.1) possibly_damaging(0.554) TCGA-BL-A0C8-01 9 95397569 95397569 G A IPPK Missense_Mutation p.S313L 0.13 deleterious(0.02) possibly_damaging(0.523) TCGA-BL-A0C8-01 X 125686549 125686549 C T DCAF12L1 Missense_Mutation p.A15T 0.23 tolerated(0.2) benign(0.124) TCGA-BL-A0C8-01 X 54496454 54496454 C A FGD1 Missense_Mutation p.V366L 0.64 tolerated(0.27) benign(0.006) TCGA-BL-A0C8-01 X 84363234 84363234 G A SATL1 Silent p.D247D 0.29 TCGA-BL-A13I-01 10 127525407 127525407 G A DHX32 Missense_Mutation p.P694L 0.17 deleterious(0.01) probably_damaging(1) TCGA-BL-A13I-01 10 128193175 128193175 G A C10orf90 Silent p.F198F 0.10 TCGA-BL-A13I-01 10 75051185 75051185 G C TTC18 Missense_Mutation p.Q750E 0.15 deleterious(0.01) benign(0.067) TCGA-BL-A13I-01 10 76980680 76980680 A C VDAC2 Missense_Mutation p.N194T 0.11 deleterious(0) possibly_damaging(0.704) TCGA-BL-A13I-01 10 84745278 84745278 C A NRG3 Missense_Mutation p.L670M 0.14 tolerated_low_confidence(0.57) benign(0.093) TCGA-BL-A13I-01 10 94269887 94269887 T G IDE Missense_Mutation p.K273Q 0.20 tolerated(0.31) benign(0.002) TCGA-BL-A13I-01 10 96707610 96707610 C T CYP2C9 Missense_Mutation p.R186C 0.16 deleterious(0.02) possibly_damaging(0.861) TCGA-BL-A13I-01 10 98273380 98273380 G A TLL2 Silent p.R21R 0.42 TCGA-BL-A13I-01 11 113146042 113146042 C A NCAM1 Missense_Mutation p.A886E 0.12 tolerated(1) benign(0.148) TCGA-BL-A13I-01 11 126215596 126215596 T C DCPS 3'UTR 0.20 TCGA-BL-A13I-01 11 132527208 132527208 G T OPCML Silent p.T58T 0.16 TCGA-BL-A13I-01 11 132527209 132527209 G T OPCML Missense_Mutation p.T58N 0.16 tolerated(0.31) benign(0.023) TCGA-BL-A13I-01 11 19077796 19077796 G A MRGPRX2 Missense_Mutation p.L52F 0.17 tolerated(0.05) benign(0.346) TCGA-BL-A13I-01 11 55703235 55703235 G C OR5I1 Missense_Mutation p.I214M 0.11 tolerated(0.13) benign(0.373) TCGA-BL-A13I-01 11 60468502 60468502 G A MS4A8 Missense_Mutation p.V57M 0.17 tolerated(0.08) benign(0.094) TCGA-BL-A13I-01 11 66282016 66282016 G A BBS1 Missense_Mutation p.R100Q 0.18 deleterious(0.01) benign(0.025) TCGA-BL-A13I-01 11 67219578 67219578 G C GPR152 Silent p.L206L 0.10 TCGA-BL-A13I-01 11 71821294 71821294 T C ANAPC15 Intron 0.17 TCGA-BL-A13I-01 12 121693608 121693608 C T CAMKK2 Splice_Site p.X266_splice 0.28 TCGA-BL-A13I-01 12 123067479 123067479 G C KNTC1 Silent p.L1070L 0.13 TCGA-BL-A13I-01 12 124416629 124416629 C A DNAH10 Silent p.R4306R 0.17 TCGA-BL-A13I-01 12 49997129 49997129 A G FAM186B Missense_Mutation p.I115T 0.21 tolerated(0.11) benign(0.276) TCGA-BL-A13I-01 12 57992888 57992888 T A PIP4K2C Missense_Mutation p.F185Y 0.17 tolerated(0.86) probably_damaging(0.994) TCGA-BL-A13I-01 12 7635262 7635262 C T CD163 Missense_Mutation p.R1075Q 0.13 tolerated(0.61) benign(0.007) TCGA-BL-A13I-01 12 8902643 8902643 G A RIMKLB Missense_Mutation p.E121K 0.09 tolerated(0.06) possibly_damaging(0.685) TCGA-BL-A13I-01 13 20224169 20224169 G C MPHOSPH8 Missense_Mutation p.D449H 0.17 deleterious_low_confidence(0.04) probably_damaging(0.94) TCGA-BL-A13I-01 13 39266204 39266204 G A FREM2 Missense_Mutation p.V1575M 0.17 tolerated(0.07) benign(0.007) TCGA-BL-A13I-01 13 42442585 42442585 G C VWA8 Missense_Mutation p.S370C 0.11 deleterious(0.02) benign(0.028) TCGA-BL-A13I-01 13 58208888 58208888 G C PCDH17 Missense_Mutation p.E736D 0.16 tolerated(0.06) benign(0.217) TCGA-BL-A13I-01 13 76104396 76104396 C G COMMD6 Missense_Mutation p.D21H 0.15 deleterious(0) probably_damaging(0.934) TCGA-BL-A13I-01 14 107170355 107170355 A G IGHV1-69 Missense_Mutation p.W5R 0.10 deleterious(0.01) probably_damaging(1) TCGA-BL-A13I-01 14 75747297 75747297 G A FOS Missense_Mutation p.R143Q 0.22 deleterious(0) probably_damaging(1) TCGA-BL-A13I-01 15 25415774 25415774 A - SNORD115-3 5'Flank 0.21 TCGA-BL-A13I-01 15 25963405 25963405 T A ATP10A Missense_Mutation p.H502L 0.25 tolerated(0.12) benign(0.158) TCGA-BL-A13I-01 15 43940187 43940187 T C CATSPER2 Missense_Mutation p.T25A 0.16 deleterious(0.02) probably_damaging(0.952) TCGA-BL-A13I-01 15 63970057 63970057 C G HERC1 Missense_Mutation p.E2353Q 0.19 possibly_damaging(0.889) TCGA-BL-A13I-01 15 81592687 81592687 C G IL16 Missense_Mutation p.S1007C 0.23 deleterious(0.01) possibly_damaging(0.687) TCGA-BL-A13I-01 16 24920408 24920408 C T SLC5A11 Silent p.S547S 0.15 TCGA-BL-A13I-01 16 28847397 28847397 C G ATXN2L Silent p.L1013L 0.14 TCGA-BL-A13I-01 16 28847414 28847414 C T ATXN2L Missense_Mutation p.S1019L 0.15 deleterious(0) benign(0.376) TCGA-BL-A13I-01 16 57468081 57468081 C T CIAPIN1 Missense_Mutation p.R144Q 0.16 tolerated(1) benign(0.001) TCGA-BL-A13I-01 16 66944181 66944181 G A CDH16 Missense_Mutation p.R717C 0.14 deleterious(0) probably_damaging(0.983) TCGA-BL-A13I-01 16 84684521 84684521 C T KLHL36 Silent p.I16I 0.14 TCGA-BL-A13I-01 17 10366440 10366440 G C MYH4 Missense_Mutation p.Q291E 0.10 deleterious(0) probably_damaging(0.998) TCGA-BL-A13I-01 17 1359203 1359203 G T CRK Missense_Mutation p.P70Q 0.12 tolerated(0.98) benign(0.001) TCGA-BL-A13I-01 17 27613535 27613535 G C NUFIP2 Missense_Mutation p.Q493E 0.21 deleterious(0.01) benign(0.37) TCGA-BL-A13I-01 17 35913327 35913327 G C SYNRG Missense_Mutation p.S833C 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BL-A13I-01 17 39967426 39967426 G A LEPREL4 Silent p.V191V 0.13 TCGA-BL-A13I-01 17 40093047 40093047 G A TTC25 RNA 0.12 TCGA-BL-A13I-01 17 42937868 42937868 G A EFTUD2 Silent p.L551L 0.10 TCGA-BL-A13I-01 17 641234 641234 C G FAM57A Missense_Mutation p.L119V 0.26 deleterious(0.02) possibly_damaging(0.872) TCGA-BL-A13I-01 18 21492790 21492790 C G LAMA3 Nonsense_Mutation p.S2425* 0.11 TCGA-BL-A13I-01 18 22642616 22642616 G A ZNF521 3'UTR 0.12 TCGA-BL-A13I-01 18 264030 264030 A G THOC1 Silent p.T84T 0.20 TCGA-BL-A13I-01 18 29598884 29598885 - G RNF125 Frame_Shift_Ins p.A21Gfs*22 0.36 TCGA-BL-A13I-01 19 10169498 10169498 A G C3P1 RNA 0.19 TCGA-BL-A13I-01 19 22575740 22575740 G T ZNF98 Silent p.G99G 0.10 TCGA-BL-A13I-01 19 36206379 36206379 G A ZBTB32 Missense_Mutation p.G284E 0.09 deleterious(0.03) probably_damaging(0.931) TCGA-BL-A13I-01 19 51958721 51958721 C T SIGLEC8 Silent p.Q334Q 0.16 TCGA-BL-A13I-01 19 52448817 52448817 G T ZNF613 Missense_Mutation p.D561Y 0.16 deleterious(0) possibly_damaging(0.615) TCGA-BL-A13I-01 19 53912233 53912233 C T ZNF765 Silent p.F475F 0.17 TCGA-BL-A13I-01 19 53912261 53912261 C T ZNF765 Missense_Mutation p.H485Y 0.09 tolerated(0.08) benign(0.014) TCGA-BL-A13I-01 19 7810765 7810765 C A CD209 Silent p.R129R 0.12 TCGA-BL-A13I-01 1 11853969 11853969 G A MTHFR Nonsense_Mutation p.Q509* 0.27 TCGA-BL-A13I-01 1 16907273 16907273 C T NBPF1 Missense_Mutation p.D520N 0.11 tolerated(0.09) probably_damaging(0.942) TCGA-BL-A13I-01 1 177898948 177898948 G C SEC16B 3'UTR 0.36 TCGA-BL-A13I-01 1 223178660 223178660 G C DISP1 Missense_Mutation p.Q1307H 0.11 tolerated_low_confidence(0.33) benign(0.002) TCGA-BL-A13I-01 1 27094409 27094410 AA - ARID1A Frame_Shift_Del p.N1040Sfs*6 0.41 TCGA-BL-A13I-01 1 3334507 3334507 C T PRDM16 Missense_Mutation p.P936L 0.39 deleterious(0.03) possibly_damaging(0.493) TCGA-BL-A13I-01 1 36904449 36904449 G C OSCP1 Missense_Mutation p.Q59E 0.37 deleterious(0) possibly_damaging(0.833) TCGA-BL-A13I-01 20 25481640 25481640 C G NINL Missense_Mutation p.E290Q 0.20 deleterious(0.02) benign(0.313) TCGA-BL-A13I-01 20 3007825 3007825 G A PTPRA Silent p.V589V 0.13 TCGA-BL-A13I-01 20 60892528 60892528 C G LAMA5 Missense_Mutation p.D2462H 0.08 benign(0.115) TCGA-BL-A13I-01 21 10944672 10944672 G A TPTE Missense_Mutation p.P188S 0.08 deleterious(0.04) possibly_damaging(0.585) TCGA-BL-A13I-01 21 35276300 35276300 T A ATP5O Missense_Mutation p.E156V 0.18 deleterious(0) probably_damaging(0.955) TCGA-BL-A13I-01 22 40805881 40805881 C G SGSM3 3'UTR 0.25 TCGA-BL-A13I-01 22 41980593 41980593 C G PMM1 Missense_Mutation p.D74H 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-BL-A13I-01 2 100167951 100167951 G A AFF3 Silent p.S1247S 0.17 TCGA-BL-A13I-01 2 109102287 109102287 G T GCC2 Nonsense_Mutation p.E1239* 0.10 TCGA-BL-A13I-01 2 109102293 109102293 G A GCC2 Missense_Mutation p.D1241N 0.10 tolerated(0.07) benign(0.019) TCGA-BL-A13I-01 2 1670223 1670223 C G PXDN Missense_Mutation p.E352Q 0.18 tolerated(0.05) possibly_damaging(0.718) TCGA-BL-A13I-01 2 168106607 168106607 A G XIRP2 Missense_Mutation p.K2902R 0.30 benign(0.125) TCGA-BL-A13I-01 2 170666827 170666827 A C SSB Missense_Mutation p.K235T 0.21 deleterious(0.03) probably_damaging(0.988) TCGA-BL-A13I-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.29 deleterious(0) probably_damaging(0.999) TCGA-BL-A13I-01 2 219884302 219884302 C T CCDC108 Silent p.L1133L 0.19 TCGA-BL-A13I-01 2 220337742 220337742 C T SPEG Silent p.F1357F 0.39 TCGA-BL-A13I-01 2 27656553 27656553 A G NRBP1 Missense_Mutation p.N75S 0.23 deleterious(0) possibly_damaging(0.55) TCGA-BL-A13I-01 2 32694656 32694656 A G BIRC6 Silent p.E2107E 0.15 TCGA-BL-A13I-01 2 33500072 33500072 G C LTBP1 Missense_Mutation p.Q928H 0.20 tolerated(0.17) benign(0.012) TCGA-BL-A13I-01 2 89442281 89442281 A G IGKV3-20 Missense_Mutation p.S42P 0.24 deleterious(0) probably_damaging(0.932) TCGA-BL-A13I-01 3 133524732 133524732 G A SRPRB Missense_Mutation p.G14S 0.31 tolerated_low_confidence(0.48) benign(0.002) TCGA-BL-A13I-01 3 167249008 167249008 C G WDR49 Missense_Mutation p.D353H 0.09 deleterious(0.03) benign(0.443) TCGA-BL-A13I-01 3 172166168 172166168 G C GHSR Missense_Mutation p.F12L 0.16 tolerated_low_confidence(0.67) benign(0) TCGA-BL-A13I-01 3 46414642 46414642 C T CCR5 Silent p.V83V 0.09 TCGA-BL-A13I-01 3 50331065 50331065 C G HYAL3 Missense_Mutation p.E328Q 0.12 tolerated(0.3) benign(0.026) TCGA-BL-A13I-01 4 108866647 108866647 G A CYP2U1 Missense_Mutation p.D338N 0.13 tolerated(1) benign(0.006) TCGA-BL-A13I-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.14 deleterious(0) probably_damaging(1) TCGA-BL-A13I-01 4 187540912 187540912 G C FAT1 Missense_Mutation p.I2276M 0.20 benign(0.395) TCGA-BL-A13I-01 4 46099317 46099317 T - GABRG1 Frame_Shift_Del p.T52Pfs*17 0.32 TCGA-BL-A13I-01 4 56885642 56885642 C T CEP135 Missense_Mutation p.H1046Y 0.07 deleterious(0) benign(0.293) TCGA-BL-A13I-01 4 96256650 96256650 C T UNC5C Missense_Mutation p.S86N 0.07 tolerated(0.21) benign(0.008) TCGA-BL-A13I-01 5 101592818 101592818 C T SLCO4C1 Splice_Site p.X490_splice 0.16 TCGA-BL-A13I-01 5 11732250 11732250 G T CTNND2 Missense_Mutation p.Q58K 0.10 deleterious(0.01) benign(0.05) TCGA-BL-A13I-01 5 140306514 140306514 G A PCDHAC1 Missense_Mutation p.V13I 0.10 tolerated(0.22) benign(0.004) TCGA-BL-A13I-01 5 140531711 140531711 G T PCDHB6 Missense_Mutation p.A625S 0.16 tolerated(0.21) benign(0.253) TCGA-BL-A13I-01 5 161300148 161300148 G A GABRA1 Missense_Mutation p.R94H 0.18 deleterious(0.03) possibly_damaging(0.772) TCGA-BL-A13I-01 5 75594618 75594618 G T SV2C Splice_Site p.X501_splice 0.20 TCGA-BL-A13I-01 5 89969991 89969991 A C GPR98 Missense_Mutation p.S1684R 0.13 probably_damaging(0.944) TCGA-BL-A13I-01 6 131979502 131979502 A G ENPP3 Silent p.G168G 0.17 TCGA-BL-A13I-01 6 146275906 146275906 T C SHPRH Missense_Mutation p.M185V 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-BL-A13I-01 6 157517418 157517418 C T ARID1B Nonsense_Mutation p.Q1328* 0.15 TCGA-BL-A13I-01 6 43174208 43174208 C T CUL9 Silent p.F1724F 0.21 TCGA-BL-A13I-01 6 43305865 43305865 A T ZNF318 Silent p.A1957A 0.13 TCGA-BL-A13I-01 6 44223092 44223092 G A SLC35B2 Missense_Mutation p.A217V 0.14 deleterious(0) probably_damaging(0.983) TCGA-BL-A13I-01 6 45514577 45514577 G - RUNX2 Frame_Shift_Del p.G368Afs*116 0.17 TCGA-BL-A13I-01 6 89479524 89479524 G A RNGTT Missense_Mutation p.R470C 0.19 deleterious(0) probably_damaging(0.943) TCGA-BL-A13I-01 7 151949162 151949162 C G KMT2C Missense_Mutation p.E495Q 0.25 possibly_damaging(0.864) TCGA-BL-A13I-01 7 19184848 19184848 G A FERD3L Silent p.L46L 0.23 TCGA-BL-A13I-01 7 25264765 25264765 A G NPVF Silent p.D189D 0.07 TCGA-BL-A13I-01 7 5103941 5103941 G C RBAK Missense_Mutation p.G285A 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-BL-A13I-01 7 82532002 82532002 T A PCLO Missense_Mutation p.K4498I 0.17 unknown(0) TCGA-BL-A13I-01 8 37730530 37730530 G C RAB11FIP1 Missense_Mutation p.S597C 0.19 deleterious(0.03) possibly_damaging(0.873) TCGA-BL-A13I-01 8 38065264 38065264 C T BAG4 Missense_Mutation p.P205S 0.13 tolerated(0.1) benign(0.019) TCGA-BL-A13I-01 8 61769208 61769208 A T CHD7 Missense_Mutation p.N2457Y 0.20 possibly_damaging(0.556) TCGA-BL-A13I-01 8 69621309 69621309 C T C8orf34 Missense_Mutation p.S441L 0.18 tolerated(0.18) benign(0.228) TCGA-BL-A13I-01 9 117810616 117810616 C T TNC Missense_Mutation p.G1592D 0.22 tolerated(0.08) probably_damaging(0.911) TCGA-BL-A13I-01 9 134026017 134026017 G C NUP214 Missense_Mutation p.Q714H 0.22 possibly_damaging(0.843) TCGA-BL-A13I-01 9 16437456 16437456 G A BNC2 Nonsense_Mutation p.Q246* 0.14 TCGA-BL-A13I-01 X 134166743 134166743 C T FAM127A Silent p.D110D 0.11 TCGA-BL-A13I-01 X 153670438 153670438 G A GDI1 Intron 0.12 TCGA-BL-A13I-01 X 41204468 41204468 A T DDX3X Missense_Mutation p.D354V 0.15 deleterious(0) probably_damaging(0.966) TCGA-BL-A13I-01 X 48895849 48895849 G A TFE3 Missense_Mutation p.P218L 0.21 tolerated(0.8) possibly_damaging(0.713) TCGA-BL-A13I-01 X 64708913 64708913 C T ZC3H12B Missense_Mutation p.R78C 0.14 deleterious(0) possibly_damaging(0.79) TCGA-BL-A13I-01 X 67741303 67741303 C T YIPF6 Missense_Mutation p.T133I 0.16 tolerated(0.81) benign(0.007) TCGA-BL-A13I-01 X 8433508 8433508 G A VCX3B Missense_Mutation p.R6K 0.21 deleterious_low_confidence(0.04) unknown(0) TCGA-BL-A13J-01 10 103530314 103530314 C A FGF8 Silent p.A169A 0.06 TCGA-BL-A13J-01 10 135013943 135013943 A G KNDC1 Missense_Mutation p.R990G 0.50 tolerated(0.23) benign(0.064) TCGA-BL-A13J-01 10 17142151 17142151 A G CUBN Missense_Mutation p.S540P 0.15 tolerated(0.26) possibly_damaging(0.588) TCGA-BL-A13J-01 10 29777621 29777621 G A SVIL Silent p.S1419S 0.35 TCGA-BL-A13J-01 11 117321323 117321323 G A DSCAML1 Missense_Mutation p.P1277L 0.12 tolerated(0.49) benign(0.005) TCGA-BL-A13J-01 11 55433539 55433539 C T OR4C6 Silent p.L299L 0.48 TCGA-BL-A13J-01 11 58275356 58275356 C T OR5B21 Missense_Mutation p.V75I 0.07 tolerated_low_confidence(0.18) benign(0.012) TCGA-BL-A13J-01 11 62288867 62288867 G A AHNAK Missense_Mutation p.P4341L 0.03 probably_damaging(1) TCGA-BL-A13J-01 11 62289475 62289475 C G AHNAK Silent p.L4138L 0.11 TCGA-BL-A13J-01 11 70172733 70172733 G C PPFIA1 Missense_Mutation p.E247Q 0.45 tolerated(0.05) benign(0.082) TCGA-BL-A13J-01 12 101510560 101510560 C A ANO4 Missense_Mutation p.P817T 0.15 tolerated(0.65) benign(0.062) TCGA-BL-A13J-01 12 120966959 120966959 G A COQ5 5'UTR 0.18 TCGA-BL-A13J-01 12 124109399 124109399 C A EIF2B1 Nonsense_Mutation p.E188* 0.16 TCGA-BL-A13J-01 12 132589770 132589770 C T EP400NL Missense_Mutation p.P270L 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.664) TCGA-BL-A13J-01 12 45810576 45810576 C T ANO6 Silent p.D723D 0.17 TCGA-BL-A13J-01 12 46764360 46764360 C G SLC38A2 Silent p.A83A 0.11 TCGA-BL-A13J-01 12 46765071 46765071 C G SLC38A2 Missense_Mutation p.K2N 0.17 tolerated_low_confidence(0.1) benign(0.075) TCGA-BL-A13J-01 12 4708904 4708904 C G DYRK4 Missense_Mutation p.A244G 0.18 tolerated(0.18) benign(0) TCGA-BL-A13J-01 12 65448985 65448985 C T WIF1 Missense_Mutation p.E311K 0.10 tolerated(0.69) benign(0.002) TCGA-BL-A13J-01 13 70314531 70314531 A G KLHL1 Silent p.N599N 0.26 TCGA-BL-A13J-01 13 72049858 72049858 T A DACH1 Missense_Mutation p.D667V 0.57 possibly_damaging(0.772) TCGA-BL-A13J-01 14 105419822 105419822 G A AHNAK2 Missense_Mutation p.R656C 0.16 possibly_damaging(0.781) TCGA-BL-A13J-01 14 105644073 105644073 C T NUDT14 Splice_Site p.X28_splice 0.18 TCGA-BL-A13J-01 14 23896042 23896042 C T MYH7 Missense_Mutation p.R663H 0.28 tolerated(0.06) probably_damaging(0.974) TCGA-BL-A13J-01 14 75369021 75369021 C G DLST Silent p.L450L 0.18 TCGA-BL-A13J-01 14 86088847 86088847 C T FLRT2 Missense_Mutation p.S330L 0.24 tolerated(0.21) benign(0.006) TCGA-BL-A13J-01 15 33872188 33872188 G C RYR3 Missense_Mutation p.R427P 0.25 benign(0.001) TCGA-BL-A13J-01 15 77025725 77025725 C G SCAPER Missense_Mutation p.V623L 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-BL-A13J-01 16 1551483 1551483 C T TELO2 Silent p.D448D 0.62 TCGA-BL-A13J-01 16 22337220 22337220 G A POLR3E Missense_Mutation p.R496Q 0.15 tolerated(0.66) benign(0.001) TCGA-BL-A13J-01 16 31075213 31075213 G A ZNF668 Missense_Mutation p.H213Y 0.75 deleterious(0) probably_damaging(0.977) TCGA-BL-A13J-01 16 67911712 67911712 C - EDC4 Frame_Shift_Del p.K287Sfs*7 0.47 TCGA-BL-A13J-01 16 76569457 76569457 G A CNTNAP4 Missense_Mutation p.R851K 0.10 deleterious(0.03) benign(0.329) TCGA-BL-A13J-01 17 26939559 26939559 C A RP11-192H23.4 Intron 0.36 TCGA-BL-A13J-01 17 28778804 28778804 T A CPD Missense_Mutation p.C1049S 0.18 tolerated(0.88) probably_damaging(0.999) TCGA-BL-A13J-01 17 38510626 38510626 C T RARA Missense_Mutation p.R294W 0.15 deleterious(0.01) benign(0.414) TCGA-BL-A13J-01 17 45518103 45518103 G C EFCAB13 3'UTR 0.07 TCGA-BL-A13J-01 17 46654110 46654110 G A HOXB4 Missense_Mutation p.P244S 0.25 tolerated_low_confidence(0.82) unknown(0) TCGA-BL-A13J-01 17 58952079 58952079 C T BCAS3 Missense_Mutation p.T214M 0.32 tolerated(0.05) benign(0.003) TCGA-BL-A13J-01 17 72691301 72691301 G A CD300LF Silent p.L269L 0.23 TCGA-BL-A13J-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.73 deleterious(0) probably_damaging(1) TCGA-BL-A13J-01 17 9631804 9631804 G T USP43 Nonsense_Mutation p.E957* 0.24 TCGA-BL-A13J-01 18 25593677 25593677 C T CDH2 Silent p.L123L 0.20 TCGA-BL-A13J-01 18 52946874 52946874 G C TCF4 Nonsense_Mutation p.S290* 0.24 TCGA-BL-A13J-01 18 52946899 52946899 G C TCF4 Intron 0.24 TCGA-BL-A13J-01 18 61255985 61255985 C G SERPINB13 Missense_Mutation p.F28L 0.20 tolerated(0.15) benign(0.021) TCGA-BL-A13J-01 18 61449598 61449598 C T SERPINB7 5'UTR 0.30 TCGA-BL-A13J-01 18 74153297 74153297 C T ZNF516 Missense_Mutation p.G572S 0.22 tolerated(0.14) benign(0.042) TCGA-BL-A13J-01 19 11032381 11032381 C A CARM1 Missense_Mutation p.S592Y 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BL-A13J-01 19 20808126 20808126 G C ZNF626 Nonsense_Mutation p.S186* 0.19 TCGA-BL-A13J-01 19 21281118 21281118 G A ZNF714 Splice_Site p.X15_splice 0.28 TCGA-BL-A13J-01 19 22574865 22574865 G A ZNF98 Missense_Mutation p.S391L 0.24 deleterious(0.01) benign(0.003) TCGA-BL-A13J-01 19 2852822 2852822 G A ZNF555 Silent p.E253E 0.17 TCGA-BL-A13J-01 19 42410144 42410144 G A ARHGEF1 Missense_Mutation p.E835K 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-BL-A13J-01 19 44891096 44891096 G A ZNF285 Silent p.F437F 0.19 TCGA-BL-A13J-01 19 53994369 53994369 G T ZNF813 Nonsense_Mutation p.G295* 0.18 TCGA-BL-A13J-01 19 55085807 55085807 C T LILRA2 Missense_Mutation p.S37F 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-BL-A13J-01 19 55493697 55493697 C T NLRP2 Silent p.L211L 0.33 TCGA-BL-A13J-01 19 57647056 57647056 G C ZIM3 Missense_Mutation p.H217D 0.18 tolerated(0.08) benign(0.022) TCGA-BL-A13J-01 19 8842207 8842207 G A OR2Z1 Missense_Mutation p.V273M 0.25 tolerated(0.21) benign(0.146) TCGA-BL-A13J-01 1 111969717 111969717 T A OVGP1 Intron 0.20 TCGA-BL-A13J-01 1 118628687 118628687 C G SPAG17 Missense_Mutation p.K540N 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-BL-A13J-01 1 149783666 149783666 G C HIST2H2BF Missense_Mutation p.F71L 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.614) TCGA-BL-A13J-01 1 152276103 152276103 C A FLG Missense_Mutation p.E3753D 0.13 unknown(0) TCGA-BL-A13J-01 1 154321468 154321468 G T ATP8B2 Silent p.L1182L 0.18 TCGA-BL-A13J-01 1 158368889 158368889 C A OR10T2 Missense_Mutation p.R123L 0.05 deleterious(0.01) possibly_damaging(0.454) TCGA-BL-A13J-01 1 167666699 167666699 G A RCSD1 Missense_Mutation p.E280K 0.07 tolerated(0.12) possibly_damaging(0.483) TCGA-BL-A13J-01 1 178753646 178753646 G C RALGPS2 Missense_Mutation p.E51Q 0.16 deleterious(0) probably_damaging(0.979) TCGA-BL-A13J-01 1 180897365 180897365 G A KIAA1614 Intron 0.12 TCGA-BL-A13J-01 1 182555244 182555244 T C RNASEL Missense_Mutation p.N233S 0.19 tolerated(0.13) benign(0.009) TCGA-BL-A13J-01 1 183532680 183532680 A T NCF2 Missense_Mutation p.V356E 0.08 deleterious(0) probably_damaging(0.911) TCGA-BL-A13J-01 1 186092199 186092199 G A HMCN1 Missense_Mutation p.G4116R 0.12 probably_damaging(0.979) TCGA-BL-A13J-01 1 193028713 193028713 C T TROVE2 5'Flank 0.07 TCGA-BL-A13J-01 1 237167710 237167710 G A MT1HL1 5'UTR 0.23 TCGA-BL-A13J-01 1 242162328 242162328 T A MAP1LC3C 5'UTR 0.47 TCGA-BL-A13J-01 1 39879470 39879470 C A KIAA0754 Missense_Mutation p.T1042N 0.07 unknown(0) TCGA-BL-A13J-01 1 39913530 39913530 G C MACF1 Missense_Mutation p.R4584T 0.17 probably_damaging(0.999) TCGA-BL-A13J-01 1 43215938 43215938 G A LEPRE1 Missense_Mutation p.R547C 0.25 deleterious(0.02) probably_damaging(0.921) TCGA-BL-A13J-01 1 6528318 6528318 G A PLEKHG5 Missense_Mutation p.R939C 0.23 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-BL-A13J-01 1 89657153 89657153 C A GBP4 Missense_Mutation p.R236I 0.26 deleterious(0) probably_damaging(0.974) TCGA-BL-A13J-01 1 91406112 91406112 G C ZNF644 Missense_Mutation p.Q267E 0.13 tolerated(0.11) benign(0.002) TCGA-BL-A13J-01 20 1459226 1459226 A C SIRPB2 Missense_Mutation p.W160G 0.07 deleterious(0.05) possibly_damaging(0.696) TCGA-BL-A13J-01 20 256641 256641 G C C20orf96 Silent p.V333V 0.15 TCGA-BL-A13J-01 20 36758657 36758657 C T TGM2 Silent p.V676V 0.30 TCGA-BL-A13J-01 20 44856245 44856245 A T CDH22 Missense_Mutation p.M191K 0.77 deleterious(0.04) benign(0.185) TCGA-BL-A13J-01 20 57767955 57767955 G T ZNF831 Silent p.T627T 0.13 TCGA-BL-A13J-01 21 32575277 32575277 C T TIAM1 Missense_Mutation p.E814K 0.11 tolerated(0.06) benign(0.07) TCGA-BL-A13J-01 21 35255954 35255954 G A ITSN1 Missense_Mutation p.R1552Q 0.10 deleterious(0.02) benign(0.288) TCGA-BL-A13J-01 21 40568278 40568278 C T BRWD1 Intron 0.12 TCGA-BL-A13J-01 21 47674341 47674341 C T MCM3AP Silent p.P1367P 0.10 TCGA-BL-A13J-01 22 23011001 23011001 G T IGLV3-27 Nonsense_Mutation p.E22* 0.23 TCGA-BL-A13J-01 22 24909450 24909450 C A UPB1 Missense_Mutation p.N206K 0.69 tolerated(0.11) probably_damaging(0.999) TCGA-BL-A13J-01 22 29730359 29730359 G C AP1B1 Nonsense_Mutation p.S735* 0.16 TCGA-BL-A13J-01 2 131103630 131103630 G C IMP4 Missense_Mutation p.D212H 0.12 deleterious(0.01) benign(0.053) TCGA-BL-A13J-01 2 135308215 135308215 G A TMEM163 Silent p.D128D 0.16 TCGA-BL-A13J-01 2 139428760 139428760 G A NXPH2 Missense_Mutation p.T176I 0.12 tolerated(0.19) benign(0.291) TCGA-BL-A13J-01 2 139428761 139428761 T A NXPH2 Missense_Mutation p.T176S 0.11 tolerated(0.29) benign(0.034) TCGA-BL-A13J-01 2 166003482 166003482 C G SCN3A Missense_Mutation p.E480Q 0.24 tolerated(0.52) probably_damaging(0.969) TCGA-BL-A13J-01 2 197650253 197650253 G C GTF3C3 Nonsense_Mutation p.S318* 0.12 TCGA-BL-A13J-01 2 86434448 86434448 A C MRPL35 Missense_Mutation p.K126Q 0.32 tolerated(0.06) benign(0.068) TCGA-BL-A13J-01 3 185191519 185191519 G A MAP3K13 Silent p.A800A 0.04 TCGA-BL-A13J-01 3 186299223 186299223 G C DNAJB11 Missense_Mutation p.E174Q 0.10 deleterious(0.03) benign(0.125) TCGA-BL-A13J-01 3 50684226 50684226 C A MAPKAPK3 Silent p.I295I 0.11 TCGA-BL-A13J-01 3 50685381 50685381 C T MAPKAPK3 Silent p.I351I 0.13 TCGA-BL-A13J-01 3 57827025 57827025 G A SLMAP Splice_Site p.X116_splice 0.61 TCGA-BL-A13J-01 4 100532321 100532321 G C MTTP Silent p.L597L 0.15 TCGA-BL-A13J-01 4 104080302 104080302 G C CENPE Missense_Mutation p.F822L 0.14 benign(0.008) TCGA-BL-A13J-01 4 114290876 114290876 G A ANK2 Missense_Mutation p.R3842Q 0.23 benign(0.013) TCGA-BL-A13J-01 4 123844277 123844277 C A SPATA5 5'UTR 0.21 TCGA-BL-A13J-01 4 126336800 126336800 A C FAT4 Missense_Mutation p.T2228P 0.21 benign(0.431) TCGA-BL-A13J-01 4 2692602 2692602 C T FAM193A Missense_Mutation p.T612M 0.18 deleterious(0) probably_damaging(0.997) TCGA-BL-A13J-01 4 74363404 74363404 C G AFM Silent p.L409L 0.12 TCGA-BL-A13J-01 4 83776177 83776177 G A SEC31A Silent p.I629I 0.25 TCGA-BL-A13J-01 5 111091544 111091544 A T NREP Intron 0.09 TCGA-BL-A13J-01 5 114469698 114469698 C G TRIM36 Missense_Mutation p.E465Q 0.08 tolerated(0.26) benign(0.01) TCGA-BL-A13J-01 5 132227765 132227766 - TT AFF4 Intron 0.36 TCGA-BL-A13J-01 5 140167231 140167231 G A PCDHA1 Silent p.A452A 0.27 TCGA-BL-A13J-01 5 140615827 140615827 C T PCDHB18 RNA 0.22 TCGA-BL-A13J-01 5 60083198 60083198 C T ELOVL7 Silent p.R9R 0.16 TCGA-BL-A13J-01 5 7867809 7867809 C T FASTKD3 Missense_Mutation p.A130T 0.31 deleterious(0) probably_damaging(0.931) TCGA-BL-A13J-01 6 105609536 105609536 T C POPDC3 Silent p.V83V 0.43 TCGA-BL-A13J-01 6 166571980 166571980 C A T Silent p.R377R 0.26 TCGA-BL-A13J-01 6 2624161 2624161 T C C6orf195 5'UTR 0.50 TCGA-BL-A13J-01 6 35554818 35554818 T C FKBP5 Missense_Mutation p.Y278C 0.53 deleterious(0.04) possibly_damaging(0.582) TCGA-BL-A13J-01 7 126544099 126544099 T A GRM8 Silent p.I315I 0.31 TCGA-BL-A13J-01 7 133812300 133812300 C A LRGUK Nonsense_Mutation p.Y60* 0.21 TCGA-BL-A13J-01 7 144062382 144062382 G A ARHGEF5 Missense_Mutation p.G874S 0.28 tolerated(0.21) benign(0.002) TCGA-BL-A13J-01 7 19184975 19184975 T C FERD3L Missense_Mutation p.Y4C 0.16 deleterious_low_confidence(0) benign(0.003) TCGA-BL-A13J-01 7 31862705 31862705 T C PDE1C Missense_Mutation p.R582G 0.16 deleterious(0.01) benign(0.089) TCGA-BL-A13J-01 7 37955842 37955842 C A SFRP4 Missense_Mutation p.V100L 0.18 tolerated(0.2) benign(0.001) TCGA-BL-A13J-01 7 39612174 39612174 G C YAE1D1 Missense_Mutation p.E184Q 0.19 tolerated(0.07) benign(0.157) TCGA-BL-A13J-01 7 98550854 98550854 C T TRRAP Missense_Mutation p.A1836V 0.07 benign(0.199) TCGA-BL-A13J-01 8 36793051 36793051 A T KCNU1 Silent p.P1021P 0.39 TCGA-BL-A13J-01 8 67546694 67546694 T C VCPIP1 3'UTR 0.20 TCGA-BL-A13J-01 8 99168597 99168597 G A POP1 Missense_Mutation p.E793K 0.15 tolerated(0.4) benign(0.004) TCGA-BL-A13J-01 9 104192127 104192127 G A ALDOB Silent p.I78I 0.62 TCGA-BL-A13J-01 9 39361282 39361283 - T SPATA31A1 Frame_Shift_Ins p.S1176Ffs*13 0.60 TCGA-BL-A13J-01 X 110463610 110463610 C A PAK3 Missense_Mutation p.P560T 0.36 deleterious(0) probably_damaging(0.999) TCGA-BL-A13J-01 X 123200039 123200039 C T STAG2 Missense_Mutation p.S704L 0.34 deleterious(0) benign(0.211) TCGA-BL-A13J-01 X 154124398 154124398 C G F8 Missense_Mutation p.G2128A 0.27 deleterious(0.04) probably_damaging(1) TCGA-BL-A13J-01 X 5821420 5821420 C T NLGN4X Silent p.P433P 0.76 TCGA-BL-A13J-01 X 70149567 70149567 G C SLC7A3 Missense_Mutation p.S94C 0.24 deleterious(0.01) benign(0.415) TCGA-BL-A13J-01 X 71839145 71839145 C T PHKA1 Missense_Mutation p.M716I 0.67 tolerated(0.1) benign(0.009) TCGA-BL-A13J-01 X 75003748 75003748 A G MAGEE2 Missense_Mutation p.L380P 0.39 deleterious(0) probably_damaging(0.999) TCGA-BL-A13J-01 X 7811670 7811670 C A VCX Missense_Mutation p.D78E 0.15 tolerated(0.88) unknown(0) TCGA-BL-A13J-01 X 8138259 8138259 G T VCX2 Missense_Mutation p.D78E 0.81 tolerated_low_confidence(0.47) unknown(0) TCGA-BL-A3JM-01 10 102045870 102045870 C T BLOC1S2 Silent p.L52L 0.31 TCGA-BL-A3JM-01 10 134591246 134591246 G A INPP5A Missense_Mutation p.R350H 0.38 deleterious(0) probably_damaging(0.954) TCGA-BL-A3JM-01 10 21804750 21804750 C A SKIDA1 Nonsense_Mutation p.E668* 0.47 TCGA-BL-A3JM-01 10 71332098 71332098 G A NEUROG3 3'UTR 0.29 TCGA-BL-A3JM-01 10 87406929 87406929 G A GRID1 Intron 0.34 TCGA-BL-A3JM-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.26 TCGA-BL-A3JM-01 11 114320733 114320733 G A REXO2 3'UTR 0.36 TCGA-BL-A3JM-01 11 117866303 117866303 G T IL10RA Splice_Site p.X230_splice 0.80 TCGA-BL-A3JM-01 11 118355688 118355688 G C KMT2A Missense_Mutation p.E1444Q 0.36 probably_damaging(0.993) TCGA-BL-A3JM-01 11 12247845 12247845 G A MICAL2 Missense_Mutation p.D606N 0.33 deleterious(0) probably_damaging(0.999) TCGA-BL-A3JM-01 11 124440079 124440079 G A OR8A1 Missense_Mutation p.D39N 0.35 deleterious(0.01) benign(0.142) TCGA-BL-A3JM-01 11 128844063 128844063 G C ARHGAP32 Nonsense_Mutation p.S996* 0.31 TCGA-BL-A3JM-01 11 133715054 133715054 G C SPATA19 Missense_Mutation p.S37C 0.37 deleterious(0) benign(0.202) TCGA-BL-A3JM-01 11 17409117 17409117 G T KCNJ11 Silent p.A174A 0.45 TCGA-BL-A3JM-01 11 26655840 26655840 T C ANO3 Missense_Mutation p.Y655H 0.45 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 11 36595001 36595001 G A RAG1 Silent p.K49K 0.29 TCGA-BL-A3JM-01 11 3720533 3720533 C A NUP98 Missense_Mutation p.W1263L 0.49 deleterious(0) probably_damaging(0.997) TCGA-BL-A3JM-01 11 51515382 51515382 T G OR4C46 Missense_Mutation p.I34S 0.36 deleterious_low_confidence(0.04) benign(0.13) TCGA-BL-A3JM-01 11 55038032 55038032 A G TRIM48 3'UTR 0.33 TCGA-BL-A3JM-01 11 55587569 55587569 C A OR5D18 Nonsense_Mutation p.S155* 0.39 TCGA-BL-A3JM-01 11 58893255 58893255 G A FAM111B Nonsense_Mutation p.W562* 0.25 TCGA-BL-A3JM-01 11 60777201 60777201 G A CD6 Silent p.E313E 0.35 TCGA-BL-A3JM-01 11 621088 621088 G A CDHR5 Missense_Mutation p.H261Y 0.35 tolerated(0.1) benign(0.271) TCGA-BL-A3JM-01 11 66262701 66262701 G A DPP3 Missense_Mutation p.D472N 0.40 tolerated(0.08) benign(0.218) TCGA-BL-A3JM-01 11 66288833 66288833 C G BBS1 Missense_Mutation p.I272M 0.39 deleterious(0.01) benign(0.204) TCGA-BL-A3JM-01 11 66627383 66627383 G - LRFN4 Frame_Shift_Del p.A544Pfs*80 0.25 TCGA-BL-A3JM-01 11 67250620 67250620 G T AIP 5'UTR 0.74 TCGA-BL-A3JM-01 11 67262389 67262389 C A PITPNM1 Missense_Mutation p.E890D 0.38 tolerated(1) benign(0.003) TCGA-BL-A3JM-01 11 68174203 68174203 C T LRP5 Silent p.L671L 0.23 TCGA-BL-A3JM-01 11 70028637 70028637 C T ANO1 Silent p.F811F 0.34 TCGA-BL-A3JM-01 11 7022651 7022651 T G ZNF214 Missense_Mutation p.Q88P 0.42 deleterious(0.04) benign(0.36) TCGA-BL-A3JM-01 11 77411897 77411897 C T RSF1 Missense_Mutation p.D793N 0.39 deleterious(0.01) possibly_damaging(0.762) TCGA-BL-A3JM-01 11 801284 801284 G T PIDD Missense_Mutation p.Q522K 0.33 deleterious(0.03) benign(0.302) TCGA-BL-A3JM-01 11 89385754 89385754 G A FOLH1B RNA 0.21 TCGA-BL-A3JM-01 11 89774338 89774338 A G TRIM49C Missense_Mutation p.S327G 0.36 tolerated(0.19) benign(0.119) TCGA-BL-A3JM-01 11 96124087 96124087 G C JRKL Missense_Mutation p.A92P 0.74 deleterious(0.03) probably_damaging(0.95) TCGA-BL-A3JM-01 12 103699968 103699968 C T C12orf42 Missense_Mutation p.E139K 0.51 tolerated(0.1) benign(0.347) TCGA-BL-A3JM-01 12 114832653 114832653 C T TBX5 Missense_Mutation p.V186M 0.52 deleterious(0) probably_damaging(0.99) TCGA-BL-A3JM-01 12 124345628 124345628 C T DNAH10 Silent p.I2155I 0.45 TCGA-BL-A3JM-01 12 12871015 12871016 - TTCT CDKN1B Frame_Shift_Ins p.K81Nfs*45 0.48 TCGA-BL-A3JM-01 12 130834457 130834457 G A PIWIL1 Missense_Mutation p.S330N 0.22 tolerated(0.67) benign(0.01) TCGA-BL-A3JM-01 12 15677896 15677896 G C PTPRO Missense_Mutation p.K680N 0.21 tolerated(0.1) possibly_damaging(0.587) TCGA-BL-A3JM-01 12 20766459 20766459 C G PDE3A Missense_Mutation p.S365C 0.58 deleterious(0.01) probably_damaging(0.928) TCGA-BL-A3JM-01 12 22059097 22059097 A G ABCC9 Silent p.S527S 0.31 TCGA-BL-A3JM-01 12 50189001 50189001 G C NCKAP5L Nonsense_Mutation p.S881* 0.57 TCGA-BL-A3JM-01 12 51707619 51707619 G A BIN2 Silent p.F50F 0.43 TCGA-BL-A3JM-01 12 53215788 53215788 C G KRT79 Silent p.G492G 0.39 TCGA-BL-A3JM-01 12 57861869 57861869 C T GLI1 Silent p.D390D 0.26 TCGA-BL-A3JM-01 12 80660235 80660235 G A OTOGL Silent p.V734V 0.47 TCGA-BL-A3JM-01 12 85450509 85450509 A G LRRIQ1 Silent p.P646P 0.29 TCGA-BL-A3JM-01 12 9248286 9248286 A G A2M Missense_Mutation p.L621P 0.18 deleterious(0.01) possibly_damaging(0.88) TCGA-BL-A3JM-01 13 103445990 103445990 C T KDELC1 Silent p.Q185Q 0.28 TCGA-BL-A3JM-01 13 28597565 28597565 C G FLT3 Missense_Mutation p.L780F 0.22 tolerated(0.45) benign(0.075) TCGA-BL-A3JM-01 13 32783164 32783164 C G FRY Missense_Mutation p.S1398C 0.29 tolerated(0.05) benign(0.001) TCGA-BL-A3JM-01 13 37563687 37563687 A G ALG5 Silent p.Y127Y 0.31 TCGA-BL-A3JM-01 13 45147390 45147390 C T TSC22D1 Missense_Mutation p.G941R 0.65 deleterious(0.01) probably_damaging(0.959) TCGA-BL-A3JM-01 13 48955394 48955394 C T RB1 Nonsense_Mutation p.Q504* 0.40 TCGA-BL-A3JM-01 13 72440381 72440381 G C DACH1 Nonsense_Mutation p.S176* 0.30 TCGA-BL-A3JM-01 13 73636090 73636090 C T KLF5 Missense_Mutation p.S118L 0.23 deleterious(0.05) possibly_damaging(0.879) TCGA-BL-A3JM-01 13 79942951 79942951 C A RBM26 Missense_Mutation p.S270I 0.36 deleterious(0.04) possibly_damaging(0.624) TCGA-BL-A3JM-01 13 92003372 92003372 G C MIR17HG RNA 0.18 TCGA-BL-A3JM-01 14 102461424 102461424 G A DYNC1H1 Silent p.Q1145Q 0.36 TCGA-BL-A3JM-01 14 102476256 102476256 G C DYNC1H1 Missense_Mutation p.M2018I 0.39 probably_damaging(0.99) TCGA-BL-A3JM-01 14 107169953 107169953 G T IGHV1-69 Missense_Mutation p.T110K 0.24 deleterious(0) probably_damaging(0.927) TCGA-BL-A3JM-01 14 19553758 19553758 G C POTEG Missense_Mutation p.K114N 0.08 tolerated(0.06) benign(0.131) TCGA-BL-A3JM-01 14 20019865 20019865 G T POTEM Missense_Mutation p.P119H 0.38 deleterious(0.01) benign(0.004) TCGA-BL-A3JM-01 14 64690078 64690078 A G SYNE2 Missense_Mutation p.M6788V 0.31 benign(0.001) TCGA-BL-A3JM-01 14 97022284 97022284 G A PAPOLA Missense_Mutation p.G589S 0.50 tolerated(0.76) benign(0.004) TCGA-BL-A3JM-01 15 40544683 40544683 A G C15orf56 Missense_Mutation p.C97R 0.76 tolerated_low_confidence(0.06) benign(0) TCGA-BL-A3JM-01 15 60919554 60919554 C T RORA Missense_Mutation p.G7E 0.34 probably_damaging(0.931) TCGA-BL-A3JM-01 15 91769539 91769539 A G SV2B Missense_Mutation p.S16G 0.38 tolerated_low_confidence(0.49) benign(0) TCGA-BL-A3JM-01 16 2256159 2256159 C G MLST8 Missense_Mutation p.R25G 0.40 deleterious(0) probably_damaging(0.983) TCGA-BL-A3JM-01 16 28848080 28848080 C - ATXN2L 3'UTR 0.44 TCGA-BL-A3JM-01 16 31144121 31144121 G A PRSS8 Silent p.L140L 0.76 TCGA-BL-A3JM-01 16 31202302 31202302 A G FUS Missense_Mutation p.D471G 0.34 tolerated_low_confidence(0.6) possibly_damaging(0.811) TCGA-BL-A3JM-01 16 56870618 56870618 G A NUP93 Missense_Mutation p.D630N 0.41 deleterious(0) probably_damaging(0.975) TCGA-BL-A3JM-01 16 65345348 65345348 C T LINC00922 RNA 0.41 TCGA-BL-A3JM-01 17 10364372 10364372 C G MYH4 Splice_Site p.X337_splice 0.19 TCGA-BL-A3JM-01 17 10409366 10409366 A G MYH1 Silent p.F673F 0.16 TCGA-BL-A3JM-01 17 12649233 12649233 T C MYOCD Intron 0.28 TCGA-BL-A3JM-01 17 1686727 1686727 C G SMYD4 Missense_Mutation p.E688D 0.24 tolerated(0.06) possibly_damaging(0.579) TCGA-BL-A3JM-01 17 21319580 21319580 C G KCNJ12 Missense_Mutation p.T309S 0.08 tolerated(0.12) probably_damaging(0.981) TCGA-BL-A3JM-01 17 36070615 36070615 G A HNF1B Missense_Mutation p.H368Y 0.33 tolerated(0.09) possibly_damaging(0.855) TCGA-BL-A3JM-01 17 36869255 36869255 G A MLLT6 Intron 0.43 TCGA-BL-A3JM-01 17 37563898 37563898 G C MED1 Missense_Mutation p.H1526D 0.18 deleterious_low_confidence(0) unknown(0) TCGA-BL-A3JM-01 17 37885818 37885818 A G MIEN1 Missense_Mutation p.L102P 0.16 tolerated(0.11) possibly_damaging(0.521) TCGA-BL-A3JM-01 17 40823016 40823016 C G PLEKHH3 Missense_Mutation p.E473Q 0.21 deleterious(0) unknown(0) TCGA-BL-A3JM-01 17 41369960 41369960 C T TMEM106A 3'UTR 0.30 TCGA-BL-A3JM-01 17 4910784 4910784 G A KIF1C Missense_Mutation p.G480R 0.17 deleterious(0) probably_damaging(0.979) TCGA-BL-A3JM-01 17 5257704 5257704 A G RABEP1 Silent p.A338A 0.21 TCGA-BL-A3JM-01 17 61628110 61628110 G C DCAF7 Missense_Mutation p.W24C 0.21 deleterious(0) benign(0) TCGA-BL-A3JM-01 17 63052712 63052712 C G GNA13 5'UTR 0.25 TCGA-BL-A3JM-01 17 66913593 66913593 C T ABCA8 Splice_Site p.X643_splice 0.21 TCGA-BL-A3JM-01 17 7577538 7577538 C G TP53 Missense_Mutation p.R248P 0.84 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 17 7906989 7906989 G A GUCY2D Silent p.R208R 0.16 TCGA-BL-A3JM-01 17 79892301 79892301 G A PYCR1 Missense_Mutation p.S233F 0.11 deleterious(0) probably_damaging(0.988) TCGA-BL-A3JM-01 17 80017896 80017896 C T DUS1L Missense_Mutation p.E366K 0.18 tolerated(0.31) benign(0) TCGA-BL-A3JM-01 18 179002 179002 G A USP14 Missense_Mutation p.V89I 0.52 tolerated(0.64) benign(0.024) TCGA-BL-A3JM-01 18 34901838 34901838 G A CELF4 Missense_Mutation p.R126W 0.40 deleterious(0) probably_damaging(0.945) TCGA-BL-A3JM-01 18 51729196 51729196 C G MBD2 Intron 0.54 TCGA-BL-A3JM-01 18 6301906 6301906 A C L3MBTL4 Missense_Mutation p.S41R 0.18 tolerated(0.12) benign(0.055) TCGA-BL-A3JM-01 18 65180301 65180301 C T DSEL Nonsense_Mutation p.W525* 0.30 TCGA-BL-A3JM-01 18 9281059 9281059 G A ANKRD12 Missense_Mutation p.E2042K 0.37 deleterious(0.01) probably_damaging(0.949) TCGA-BL-A3JM-01 19 17892531 17892531 G A FCHO1 Silent p.R613R 0.83 TCGA-BL-A3JM-01 19 18378205 18378206 TC - KIAA1683 Frame_Shift_Del p.K49Sfs*149 0.29 TCGA-BL-A3JM-01 19 18378333 18378333 C G KIAA1683 Missense_Mutation p.R6T 0.34 tolerated(0.11) benign(0.245) TCGA-BL-A3JM-01 19 1978971 1978971 C G CSNK1G2 Missense_Mutation p.I187M 0.30 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 19 20807986 20807986 C G ZNF626 Missense_Mutation p.E233Q 0.22 deleterious(0.03) benign(0.291) TCGA-BL-A3JM-01 19 3053861 3053861 C T AES Missense_Mutation p.D251N 0.19 deleterious_low_confidence(0.03) benign(0.267) TCGA-BL-A3JM-01 19 31039640 31039640 A G ZNF536 Silent p.T1038T 0.22 TCGA-BL-A3JM-01 19 40909668 40909668 G A PRX Silent p.F43F 0.22 TCGA-BL-A3JM-01 19 46997598 46997598 G A PNMAL2 Silent p.V375V 0.15 TCGA-BL-A3JM-01 19 47124612 47124612 G A PTGIR Silent p.P362P 0.77 TCGA-BL-A3JM-01 19 47424411 47424411 G A ARHGAP35 Missense_Mutation p.G827R 0.41 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 19 4852049 4852049 G A PLIN3 Missense_Mutation p.P205S 0.18 deleterious(0) probably_damaging(0.939) TCGA-BL-A3JM-01 19 49136903 49136903 G A DBP Missense_Mutation p.S187F 0.26 deleterious(0) probably_damaging(0.92) TCGA-BL-A3JM-01 19 51274466 51274466 G C GPR32 Missense_Mutation p.Q203H 0.80 deleterious(0.04) possibly_damaging(0.767) TCGA-BL-A3JM-01 19 56918474 56918474 C - ZNF583 5'UTR 0.44 TCGA-BL-A3JM-01 19 59069644 59069644 C T UBE2M Silent p.Q35Q 0.22 TCGA-BL-A3JM-01 19 6731901 6731901 C T GPR108 Splice_Site p.X434_splice 0.93 TCGA-BL-A3JM-01 19 7833781 7833781 G A CLEC4M Silent p.A369A 0.08 TCGA-BL-A3JM-01 19 7918186 7918186 G C EVI5L Missense_Mutation p.K371N 0.27 deleterious(0.02) benign(0.01) TCGA-BL-A3JM-01 19 9017366 9017366 C T MUC16 Missense_Mutation p.R12653K 0.82 possibly_damaging(0.567) TCGA-BL-A3JM-01 19 9072253 9072253 A C MUC16 Missense_Mutation p.S5065A 0.78 unknown(0) TCGA-BL-A3JM-01 19 9213857 9213857 C T OR7G2 Silent p.P42P 0.24 TCGA-BL-A3JM-01 19 9639507 9639507 G A ZNF426 Missense_Mutation p.S405L 0.22 deleterious(0.04) benign(0.06) TCGA-BL-A3JM-01 1 10471526 10471526 G C PGD Missense_Mutation p.E191Q 0.23 deleterious(0) probably_damaging(0.978) TCGA-BL-A3JM-01 1 110173340 110173340 G T AMPD2 Missense_Mutation p.Q785H 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-BL-A3JM-01 1 114247322 114247322 A C PHTF1 Missense_Mutation p.I590S 0.29 deleterious(0) probably_damaging(0.999) TCGA-BL-A3JM-01 1 115261332 115261332 C T CSDE1 Missense_Mutation p.D797N 0.27 deleterious(0) possibly_damaging(0.466) TCGA-BL-A3JM-01 1 117529499 117529499 C T PTGFRN Silent p.I850I 0.40 TCGA-BL-A3JM-01 1 1325721 1325721 C A CCNL2 Nonsense_Mutation p.E299* 0.37 TCGA-BL-A3JM-01 1 154213986 154213986 C G UBAP2L Intron 0.17 TCGA-BL-A3JM-01 1 157803159 157803159 C T CD5L Missense_Mutation p.G288R 0.24 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 1 166973535 166973535 C T MAEL Silent p.Y214Y 0.15 TCGA-BL-A3JM-01 1 17026513 17026513 C G ESPNP Intron 0.11 TCGA-BL-A3JM-01 1 171085395 171085395 G A FMO3 Missense_Mutation p.E411K 0.33 tolerated(1) benign(0.068) TCGA-BL-A3JM-01 1 172558282 172558282 C G SUCO Missense_Mutation p.L681V 0.15 tolerated(1) benign(0.004) TCGA-BL-A3JM-01 1 173517647 173517647 C G SLC9C2 Missense_Mutation p.A448P 0.34 deleterious(0.01) probably_damaging(0.945) TCGA-BL-A3JM-01 1 179989148 179989148 C T CEP350 Nonsense_Mutation p.Q747* 0.34 TCGA-BL-A3JM-01 1 180063622 180063622 G A CEP350 Silent p.K2794K 0.31 TCGA-BL-A3JM-01 1 193121533 193121533 A G CDC73 Missense_Mutation p.T311A 0.50 deleterious(0.05) possibly_damaging(0.802) TCGA-BL-A3JM-01 1 21177865 21177865 G C EIF4G3 Missense_Mutation p.Q1170E 0.32 tolerated(0.4) benign(0.066) TCGA-BL-A3JM-01 1 212798352 212798352 A T FAM71A Missense_Mutation p.I45L 0.27 tolerated(0.11) benign(0.314) TCGA-BL-A3JM-01 1 228400372 228400372 C G OBSCN Silent p.L296L 0.27 TCGA-BL-A3JM-01 1 230398367 230398367 C G GALNT2 Missense_Mutation p.F395L 0.30 tolerated(0.07) benign(0.003) TCGA-BL-A3JM-01 1 23768756 23768756 G C ASAP3 Silent p.L198L 0.23 TCGA-BL-A3JM-01 1 247768909 247768909 T A OR2G3 Missense_Mutation p.S8T 0.40 tolerated(0.27) benign(0.003) TCGA-BL-A3JM-01 1 27105793 27105793 G T ARID1A Nonsense_Mutation p.E1802* 0.37 TCGA-BL-A3JM-01 1 27106492 27106492 G A ARID1A Missense_Mutation p.E2035K 0.41 possibly_damaging(0.72) TCGA-BL-A3JM-01 1 27106953 27106953 G T ARID1A Missense_Mutation p.Q2188H 0.27 possibly_damaging(0.557) TCGA-BL-A3JM-01 1 33490112 33490112 C T AK2 Silent p.L50L 0.33 TCGA-BL-A3JM-01 1 39878981 39878981 C T KIAA0754 Missense_Mutation p.S879F 0.38 possibly_damaging(0.449) TCGA-BL-A3JM-01 1 39910468 39910468 G T MACF1 Missense_Mutation p.Q4463H 0.44 benign(0.004) TCGA-BL-A3JM-01 1 43232529 43232529 G C LEPRE1 Silent p.L38L 0.39 TCGA-BL-A3JM-01 1 65095063 65095063 C A CACHD1 Missense_Mutation p.N130K 0.33 tolerated(0.21) benign(0.113) TCGA-BL-A3JM-01 1 77094406 77094406 G A ST6GALNAC3 Missense_Mutation p.R278K 0.30 probably_damaging(0.996) TCGA-BL-A3JM-01 1 95609471 95609471 C G TMEM56 Missense_Mutation p.T5R 0.54 tolerated(0.09) benign(0.288) TCGA-BL-A3JM-01 20 20051628 20051628 G T C20orf26 Missense_Mutation p.D92Y 0.18 tolerated(1) benign(0.009) TCGA-BL-A3JM-01 20 3870313 3870313 C G PANK2 Missense_Mutation p.S189C 0.13 deleterious(0) benign(0.431) TCGA-BL-A3JM-01 20 43727083 43727083 G A KCNS1 Silent p.F110F 0.43 TCGA-BL-A3JM-01 20 44108543 44108543 C T WFDC2 Intron 0.21 TCGA-BL-A3JM-01 20 44596540 44596540 G A ZNF335 Missense_Mutation p.P216L 0.22 tolerated_low_confidence(0.09) benign(0) TCGA-BL-A3JM-01 20 56099350 56099350 A G CTCFL Intron 0.14 TCGA-BL-A3JM-01 20 60712444 60712444 G A PSMA7 Silent p.V210V 0.62 TCGA-BL-A3JM-01 21 10934109 10934109 A C TPTE Missense_Mutation p.Y290D 0.15 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 21 42860419 42860419 G C TMPRSS2 Missense_Mutation p.S153C 0.72 deleterious(0.05) probably_damaging(0.959) TCGA-BL-A3JM-01 22 20812254 20812254 G C KLHL22 Missense_Mutation p.I382M 0.35 tolerated(0.11) probably_damaging(0.969) TCGA-BL-A3JM-01 22 20909319 20909319 G A MED15 Missense_Mutation p.G112E 0.05 deleterious(0.01) unknown(0) TCGA-BL-A3JM-01 22 32275583 32275583 G A DEPDC5 Nonsense_Mutation p.W1284* 0.66 TCGA-BL-A3JM-01 2 116066873 116066873 T A DPP10 Missense_Mutation p.L44Q 0.49 deleterious(0) probably_damaging(0.996) TCGA-BL-A3JM-01 2 179397839 179397839 C G TTN Missense_Mutation p.E34501D 0.38 TCGA-BL-A3JM-01 2 218699859 218699859 C T TNS1 Missense_Mutation p.E954K 0.75 tolerated(0.05) benign(0.212) TCGA-BL-A3JM-01 2 223066557 223066557 A C PAX3 Intron 0.89 TCGA-BL-A3JM-01 2 233245162 233245162 C G ALPP Silent p.L275L 0.37 TCGA-BL-A3JM-01 2 44101118 44101118 C T ABCG8 Silent p.I468I 0.38 TCGA-BL-A3JM-01 2 48668076 48668076 A G PPP1R21 5'UTR 0.53 TCGA-BL-A3JM-01 2 74462335 74462335 C A SLC4A5 Missense_Mutation p.A776S 0.67 tolerated(0.8) benign(0.063) TCGA-BL-A3JM-01 2 88425824 88425824 C A FABP1 Silent p.G37G 0.34 TCGA-BL-A3JM-01 3 105269058 105269058 G A ALCAM Missense_Mutation p.E488K 0.55 tolerated(0.09) probably_damaging(0.932) TCGA-BL-A3JM-01 3 132056364 132056364 C T ACPP Missense_Mutation p.S174L 0.83 deleterious(0) probably_damaging(0.993) TCGA-BL-A3JM-01 3 185766491 185766491 G A ETV5 Silent p.P490P 0.30 TCGA-BL-A3JM-01 3 194147857 194147857 A C ATP13A3 Silent p.G1024G 0.77 TCGA-BL-A3JM-01 3 195717090 195717090 G A SDHAP1 RNA 0.23 TCGA-BL-A3JM-01 3 35731587 35731587 T G ARPP21 Missense_Mutation p.L167R 0.27 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.50 deleterious(0) probably_damaging(0.986) TCGA-BL-A3JM-01 3 47913544 47913544 T A MAP4 Missense_Mutation p.K790M 0.38 deleterious(0) probably_damaging(0.999) TCGA-BL-A3JM-01 3 52090150 52090150 C A DUSP7 Missense_Mutation p.R78L 0.23 deleterious(0) possibly_damaging(0.692) TCGA-BL-A3JM-01 3 52179937 52179937 T C POC1A Missense_Mutation p.I202V 0.34 tolerated(0.1) benign(0.045) TCGA-BL-A3JM-01 3 52256622 52256622 G A TLR9 Silent p.F724F 0.49 TCGA-BL-A3JM-01 3 52883817 52883817 C A TMEM110 Missense_Mutation p.G140C 0.79 deleterious(0) probably_damaging(0.991) TCGA-BL-A3JM-01 3 57232284 57232284 G T HESX1 Missense_Mutation p.H167N 0.11 deleterious(0.02) benign(0.174) TCGA-BL-A3JM-01 3 58062849 58062849 C T FLNB Silent p.I123I 0.38 TCGA-BL-A3JM-01 3 69031975 69031975 C T EOGT Missense_Mutation p.D317N 0.26 tolerated(0.37) possibly_damaging(0.767) TCGA-BL-A3JM-01 3 97806241 97806241 T G OR5AC2 Silent p.T75T 0.27 TCGA-BL-A3JM-01 4 121616352 121616352 C T PRDM5 Missense_Mutation p.E603K 0.38 tolerated(0.17) possibly_damaging(0.842) TCGA-BL-A3JM-01 4 16077403 16077403 T G PROM1 Missense_Mutation p.T43P 1.00 deleterious(0) probably_damaging(0.998) TCGA-BL-A3JM-01 4 162421208 162421208 T C FSTL5 Missense_Mutation p.Q473R 0.70 tolerated(0.53) possibly_damaging(0.885) TCGA-BL-A3JM-01 4 23815314 23815314 T G PPARGC1A Silent p.R598R 0.34 TCGA-BL-A3JM-01 4 40438583 40438583 G A RBM47 Missense_Mutation p.S402F 0.31 tolerated(0.06) probably_damaging(0.991) TCGA-BL-A3JM-01 4 40440104 40440104 G A RBM47 Silent p.F269F 0.44 TCGA-BL-A3JM-01 4 55564535 55564535 A T KIT Silent p.P141P 0.29 TCGA-BL-A3JM-01 4 57181275 57181275 C T KIAA1211 Missense_Mutation p.P536L 0.65 deleterious(0) possibly_damaging(0.851) TCGA-BL-A3JM-01 4 57181322 57181322 A G KIAA1211 Missense_Mutation p.K552E 0.93 deleterious(0) possibly_damaging(0.486) TCGA-BL-A3JM-01 4 88534106 88534106 C T DSPP Silent p.D256D 0.30 TCGA-BL-A3JM-01 5 110441021 110441021 C T WDR36 Missense_Mutation p.S408F 0.19 deleterious(0) probably_damaging(0.993) TCGA-BL-A3JM-01 5 134074397 134074397 G A CAMLG Silent p.A29A 0.06 TCGA-BL-A3JM-01 5 14507245 14507245 G A TRIO Missense_Mutation p.R2876H 0.20 unknown(0) TCGA-BL-A3JM-01 5 150407000 150407000 C T GPX3 Nonsense_Mutation p.R123* 0.26 TCGA-BL-A3JM-01 5 150407039 150407039 G C GPX3 Missense_Mutation p.E136Q 0.16 tolerated(0.24) benign(0.211) TCGA-BL-A3JM-01 5 15500819 15500819 G A FBXL7 Missense_Mutation p.E12K 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.899) TCGA-BL-A3JM-01 5 16694540 16694540 A G MYO10 Missense_Mutation p.M1247T 0.28 tolerated(0.13) probably_damaging(0.968) TCGA-BL-A3JM-01 5 175811366 175811366 G A NOP16 Intron 0.27 TCGA-BL-A3JM-01 5 180430853 180430853 C G BTNL3 Intron 0.47 TCGA-BL-A3JM-01 5 2749625 2749625 T C IRX2 Missense_Mutation p.N176D 0.26 deleterious(0) possibly_damaging(0.874) TCGA-BL-A3JM-01 5 54410097 54410097 C T CDC20B Silent p.R503R 0.31 TCGA-BL-A3JM-01 5 79030171 79030171 G T CMYA5 Missense_Mutation p.L1861F 0.18 probably_damaging(0.986) TCGA-BL-A3JM-01 6 123319295 123319295 A T CLVS2 Missense_Mutation p.N125Y 0.37 deleterious(0) probably_damaging(0.98) TCGA-BL-A3JM-01 6 143929448 143929448 T C PHACTR2 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.599) TCGA-BL-A3JM-01 6 146121181 146121181 C T FBXO30 3'UTR 0.56 TCGA-BL-A3JM-01 6 146720833 146720833 C T GRM1 Silent p.A886A 0.46 TCGA-BL-A3JM-01 6 150390232 150390232 C T ULBP3 5'Flank 0.21 TCGA-BL-A3JM-01 6 152674462 152674462 T A SYNE1 Missense_Mutation p.N3730I 0.04 possibly_damaging(0.86) TCGA-BL-A3JM-01 6 157744582 157744582 G T TMEM242 5'UTR 0.32 TCGA-BL-A3JM-01 6 160225085 160225085 C T PNLDC1 Nonsense_Mutation p.Q102* 0.33 TCGA-BL-A3JM-01 6 167550264 167550264 T G CCR6 Silent p.T182T 0.44 TCGA-BL-A3JM-01 6 26156945 26156945 G T HIST1H1E Missense_Mutation p.K109N 0.30 deleterious(0) unknown(0) TCGA-BL-A3JM-01 6 31633248 31633248 C T CSNK2B 5'Flank 0.22 TCGA-BL-A3JM-01 6 32157485 32157485 C T PBX2 Missense_Mutation p.E70K 0.51 deleterious(0.04) possibly_damaging(0.595) TCGA-BL-A3JM-01 6 32944130 32944130 C T BRD2 Silent p.L238L 0.34 TCGA-BL-A3JM-01 6 39047367 39047367 C A GLP1R Silent p.I357I 0.30 TCGA-BL-A3JM-01 6 41708252 41708252 G C PGC Silent p.L248L 0.43 TCGA-BL-A3JM-01 6 42016405 42016405 C T TAF8 5'Flank 0.36 TCGA-BL-A3JM-01 6 43400684 43400684 C T ABCC10 Silent p.H322H 0.37 TCGA-BL-A3JM-01 6 46623750 46623750 C T SLC25A27 Missense_Mutation p.P93S 0.31 deleterious(0.02) probably_damaging(0.922) TCGA-BL-A3JM-01 6 52698951 52698951 A C GSTA5 Silent p.P134P 0.37 TCGA-BL-A3JM-01 6 90448114 90448114 C T MDN1 Missense_Mutation p.E1552K 0.40 benign(0.009) TCGA-BL-A3JM-01 7 100364700 100364700 C A ZAN Missense_Mutation p.F1560L 0.35 unknown(0) TCGA-BL-A3JM-01 7 100841559 100841559 G A MOGAT3 Missense_Mutation p.A194V 0.73 deleterious(0.03) possibly_damaging(0.775) TCGA-BL-A3JM-01 7 127253582 127253582 G T PAX4 Missense_Mutation p.F181L 0.24 deleterious(0.02) probably_damaging(0.962) TCGA-BL-A3JM-01 7 147600709 147600709 C T CNTNAP2 Silent p.Y717Y 0.23 TCGA-BL-A3JM-01 7 152373194 152373194 C T XRCC2 5'UTR 0.40 TCGA-BL-A3JM-01 7 26709771 26709771 C T SKAP2 Missense_Mutation p.G343E 0.38 deleterious(0) probably_damaging(1) TCGA-BL-A3JM-01 7 27213894 27213894 G A HOXA10 Missense_Mutation p.S11L 0.34 tolerated(0.11) possibly_damaging(0.629) TCGA-BL-A3JM-01 7 6048683 6048683 G A PMS2 5'UTR 0.24 TCGA-BL-A3JM-01 7 83636800 83636800 C A SEMA3A Nonsense_Mutation p.G337* 0.40 TCGA-BL-A3JM-01 8 110588178 110588178 C G SYBU Missense_Mutation p.E317Q 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-BL-A3JM-01 8 113318249 113318249 G T CSMD3 Silent p.T2686T 0.26 TCGA-BL-A3JM-01 8 145049425 145049425 C T PARP10 3'Flank 0.53 TCGA-BL-A3JM-01 8 1841803 1841803 G A ARHGEF10 Silent p.R417R 0.22 TCGA-BL-A3JM-01 8 19811640 19811640 C T LPL Missense_Mutation p.P184L 0.25 deleterious(0) probably_damaging(0.929) TCGA-BL-A3JM-01 8 25364307 25364307 G A CDCA2 Missense_Mutation p.D709N 0.35 tolerated(0.18) benign(0.275) TCGA-BL-A3JM-01 8 33451114 33451114 C T DUSP26 Missense_Mutation p.D125N 0.25 tolerated(0.3) probably_damaging(0.999) TCGA-BL-A3JM-01 8 55539332 55539332 A G RP1 Missense_Mutation p.I964V 0.54 tolerated(0.09) benign(0.015) TCGA-BL-A3JM-01 8 57079893 57079893 G A PLAG1 Missense_Mutation p.R138C 0.22 deleterious(0) probably_damaging(0.993) TCGA-BL-A3JM-01 8 67976610 67976610 G T CSPP1 5'UTR 0.27 TCGA-BL-A3JM-01 8 77764201 77764201 C G ZFHX4 Missense_Mutation p.Q1682E 0.19 benign(0.001) TCGA-BL-A3JM-01 8 96166422 96166422 C G PLEKHF2 Silent p.P50P 0.20 TCGA-BL-A3JM-01 8 97157377 97157377 C T GDF6 Missense_Mutation p.R261Q 0.14 tolerated(0.11) benign(0.065) TCGA-BL-A3JM-01 8 97172829 97172829 G C GDF6 Missense_Mutation p.S31C 0.23 deleterious(0.02) possibly_damaging(0.456) TCGA-BL-A3JM-01 9 125438220 125438220 G A OR1L3 Missense_Mutation p.R271Q 0.28 tolerated(0.22) benign(0.074) TCGA-BL-A3JM-01 9 130210620 130210620 G C RPL12 Silent p.L125L 0.36 TCGA-BL-A3JM-01 9 131388155 131388155 C T SPTAN1 Silent p.I2059I 0.36 TCGA-BL-A3JM-01 9 137709646 137709646 C A COL5A1 Missense_Mutation p.P1400H 0.62 unknown(0) TCGA-BL-A3JM-01 9 137717708 137717708 C T COL5A1 Silent p.A1675A 0.32 TCGA-BL-A3JM-01 9 137734025 137734025 C T COL5A1 Missense_Mutation p.T1798M 0.14 unknown(0) TCGA-BL-A3JM-01 9 139565433 139565433 G A EGFL7 Silent p.Q201Q 0.40 TCGA-BL-A3JM-01 9 14859231 14859231 C T FREM1 Missense_Mutation p.R194Q 0.44 tolerated(1) benign(0.002) TCGA-BL-A3JM-01 9 20414153 20414153 C G MLLT3 Missense_Mutation p.E231Q 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-BL-A3JM-01 9 32986023 32986023 G A APTX Silent p.S163S 0.18 TCGA-BL-A3JM-01 9 8460469 8460469 G A PTPRD Missense_Mutation p.P1273S 0.47 deleterious(0) probably_damaging(0.995) TCGA-BL-A3JM-01 9 8465602 8465602 G A PTPRD Missense_Mutation p.A1193V 0.26 tolerated(0.06) probably_damaging(0.989) TCGA-BL-A3JM-01 X 153648555 153648555 G A TAZ Missense_Mutation p.M217I 0.78 deleterious(0) benign(0.265) TCGA-BL-A3JM-01 X 24735079 24735079 G T POLA1 Nonsense_Mutation p.E227* 0.16 TCGA-BL-A3JM-01 X 25028406 25028406 T A ARX Missense_Mutation p.R364W 0.74 deleterious(0) probably_damaging(0.964) TCGA-BL-A3JM-01 X 53672365 53672365 G A HUWE1 Silent p.V134V 0.67 TCGA-BL-A3JM-01 X 55054211 55054211 C T ALAS2 Intron 0.83 TCGA-BL-A5ZZ-01 10 103825279 103825279 C T HPS6 Silent p.F16F 0.14 TCGA-BL-A5ZZ-01 10 123844570 123844570 C T TACC2 Missense_Mutation p.P852L 0.21 benign(0.01) TCGA-BL-A5ZZ-01 10 124794018 124794018 G T ACADSB Missense_Mutation p.M63I 0.10 deleterious(0.03) benign(0.007) TCGA-BL-A5ZZ-01 10 1405375 1405375 C T ADARB2 Missense_Mutation p.A309T 0.27 tolerated(0.18) probably_damaging(1) TCGA-BL-A5ZZ-01 10 27702903 27702903 C T PTCHD3 Missense_Mutation p.D93N 0.22 tolerated_low_confidence(0.47) possibly_damaging(0.741) TCGA-BL-A5ZZ-01 10 44873150 44873150 A G CXCL12 3'UTR 0.14 TCGA-BL-A5ZZ-01 10 5037998 5037998 G A AKR1C2 Silent p.D210D 0.16 TCGA-BL-A5ZZ-01 10 89624275 89624275 C T PTEN Nonsense_Mutation p.Q17* 0.23 TCGA-BL-A5ZZ-01 11 1102479 1102479 C T MUC2 Silent p.P2621P 0.18 TCGA-BL-A5ZZ-01 11 14808014 14808014 C T PDE3B Missense_Mutation p.S354L 0.20 deleterious(0) possibly_damaging(0.721) TCGA-BL-A5ZZ-01 11 420835 420835 G C ANO9 Missense_Mutation p.L506V 0.27 tolerated(0.52) benign(0.018) TCGA-BL-A5ZZ-01 11 45924439 45924439 T C MAPK8IP1 Missense_Mutation p.L374P 0.31 deleterious(0) probably_damaging(0.999) TCGA-BL-A5ZZ-01 11 45924447 45924447 G A MAPK8IP1 Missense_Mutation p.D377N 0.30 deleterious(0) probably_damaging(0.998) TCGA-BL-A5ZZ-01 11 59245829 59245829 T C OR4D10 Silent p.D309D 0.26 TCGA-BL-A5ZZ-01 11 95561032 95561032 A G CEP57 Missense_Mutation p.N323S 0.22 deleterious(0) benign(0.194) TCGA-BL-A5ZZ-01 12 102811727 102811727 G T IGF1 Missense_Mutation p.P153T 0.10 tolerated(0.21) benign(0.005) TCGA-BL-A5ZZ-01 12 110765546 110765546 C T ATP2A2 Silent p.I273I 0.19 TCGA-BL-A5ZZ-01 12 111948380 111948380 C G ATXN2 Missense_Mutation p.R682T 0.22 benign(0.297) TCGA-BL-A5ZZ-01 12 117665320 117665320 G A NOS1 Missense_Mutation p.R1212C 0.26 deleterious(0) probably_damaging(1) TCGA-BL-A5ZZ-01 12 119559911 119559911 G A SRRM4 Silent p.K167K 0.19 TCGA-BL-A5ZZ-01 12 122332675 122332675 G A PSMD9 Missense_Mutation p.V57M 0.18 deleterious(0) probably_damaging(0.98) TCGA-BL-A5ZZ-01 12 15803921 15803921 G A EPS8 Nonsense_Mutation p.Q424* 0.34 TCGA-BL-A5ZZ-01 12 19427660 19427660 G C PLEKHA5 Silent p.L352L 0.19 TCGA-BL-A5ZZ-01 12 21919264 21919264 G A KCNJ8 Missense_Mutation p.A223V 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-BL-A5ZZ-01 12 49438032 49438033 CC - KMT2D Frame_Shift_Del p.G1713Afs*21 0.23 TCGA-BL-A5ZZ-01 12 56142751 56142751 C T GDF11 Missense_Mutation p.P276L 0.22 tolerated(0.18) benign(0.023) TCGA-BL-A5ZZ-01 12 58140803 58140803 C A TSPAN31 Silent p.I149I 0.22 TCGA-BL-A5ZZ-01 12 85680720 85680720 T C ALX1 Silent p.Y207Y 0.13 TCGA-BL-A5ZZ-01 13 113773141 113773141 C A F7 Missense_Mutation p.P407Q 0.28 deleterious(0) probably_damaging(1) TCGA-BL-A5ZZ-01 13 21006313 21006313 C T CRYL1 Silent p.Q187Q 0.28 TCGA-BL-A5ZZ-01 13 46728949 46728949 G A LCP1 Silent p.F188F 0.12 TCGA-BL-A5ZZ-01 13 53036541 53036541 A G CKAP2 Missense_Mutation p.K383E 0.20 deleterious(0) probably_damaging(0.947) TCGA-BL-A5ZZ-01 13 76395560 76395560 G A LMO7 Missense_Mutation p.E586K 0.23 tolerated(0.13) benign(0.004) TCGA-BL-A5ZZ-01 14 103442094 103442094 G A CDC42BPB Silent p.L478L 0.32 TCGA-BL-A5ZZ-01 14 103802407 103802407 T C EIF5 Missense_Mutation p.I36T 0.37 deleterious(0.03) possibly_damaging(0.496) TCGA-BL-A5ZZ-01 14 24737134 24737134 C T RABGGTA Missense_Mutation p.R393Q 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-BL-A5ZZ-01 14 50792377 50792377 A - ATP5S Frame_Shift_Del p.N196Ifs*15 0.31 TCGA-BL-A5ZZ-01 14 53178137 53178138 GA - PSMC6 Frame_Shift_Del p.E128Gfs*7 0.27 TCGA-BL-A5ZZ-01 14 59112675 59112675 C T DACT1 Missense_Mutation p.S445F 0.20 tolerated(0.13) benign(0.091) TCGA-BL-A5ZZ-01 14 68040016 68040016 C G PLEKHH1 Nonsense_Mutation p.Y584* 0.33 TCGA-BL-A5ZZ-01 15 23006742 23006742 T C NIPA2 Missense_Mutation p.I188V 0.18 tolerated(0.14) benign(0.047) TCGA-BL-A5ZZ-01 15 45558281 45558281 C T SLC28A2 Silent p.V288V 0.25 TCGA-BL-A5ZZ-01 15 62238600 62238600 G C VPS13C Missense_Mutation p.A1629G 0.21 tolerated(0.33) benign(0.007) TCGA-BL-A5ZZ-01 15 72104736 72104736 C T NR2E3 RNA 0.26 TCGA-BL-A5ZZ-01 15 84560117 84560117 C T ADAMTSL3 Silent p.F416F 0.17 TCGA-BL-A5ZZ-01 16 2004138 2004138 C G RPL3L Missense_Mutation p.K5N 0.19 tolerated(0.06) possibly_damaging(0.671) TCGA-BL-A5ZZ-01 16 2011195 2011195 T C NDUFB10 Missense_Mutation p.Y58H 0.17 deleterious(0) probably_damaging(0.992) TCGA-BL-A5ZZ-01 16 20357601 20357601 C T UMOD Silent p.S343S 0.22 TCGA-BL-A5ZZ-01 16 26147495 26147495 A - HS3ST4 Frame_Shift_Del p.K433Nfs*5 0.28 TCGA-BL-A5ZZ-01 16 30018385 30018385 C T DOC2A Silent p.A227A 0.27 TCGA-BL-A5ZZ-01 16 3191372 3191372 G A ZNF213 3'UTR 0.39 TCGA-BL-A5ZZ-01 16 3640829 3640829 C T SLX4 Missense_Mutation p.G937E 0.25 tolerated(1) benign(0.114) TCGA-BL-A5ZZ-01 16 3788651 3788651 C A CREBBP Missense_Mutation p.D1435Y 0.11 unknown(0) TCGA-BL-A5ZZ-01 16 67682819 67682819 G A RLTPR Silent p.V511V 0.24 TCGA-BL-A5ZZ-01 16 69726024 69726024 G A NFAT5 Missense_Mutation p.E766K 0.19 possibly_damaging(0.725) TCGA-BL-A5ZZ-01 16 69778785 69778785 G A NOB1 Silent p.R320R 0.38 TCGA-BL-A5ZZ-01 16 76587220 76587220 G T CNTNAP4 Silent p.A1088A 0.29 TCGA-BL-A5ZZ-01 17 26100220 26100221 TT - NOS2 Frame_Shift_Del p.K509Efs*65 0.16 TCGA-BL-A5ZZ-01 17 27254014 27254014 G T PHF12 Silent p.R106R 0.15 TCGA-BL-A5ZZ-01 17 27889648 27889648 C G ABHD15 Missense_Mutation p.Q446H 0.40 tolerated(0.57) benign(0.004) TCGA-BL-A5ZZ-01 17 36498939 36498939 C T GPR179 Nonsense_Mutation p.W245* 0.23 TCGA-BL-A5ZZ-01 17 59115320 59115320 G A BCAS3 Missense_Mutation p.M626I 0.12 tolerated(0.55) benign(0.001) TCGA-BL-A5ZZ-01 17 65942424 65942424 G T BPTF Nonsense_Mutation p.E2534* 0.17 TCGA-BL-A5ZZ-01 17 8079317 8079317 G C TMEM107 Missense_Mutation p.L39V 0.27 tolerated(0.15) benign(0.379) TCGA-BL-A5ZZ-01 18 21447849 21447849 C T LAMA3 Missense_Mutation p.R1579W 0.19 probably_damaging(0.977) TCGA-BL-A5ZZ-01 18 28737511 28737511 C G DSC1 Silent p.S58S 0.13 TCGA-BL-A5ZZ-01 18 29178548 29178548 C T TTR Silent p.N118N 0.23 TCGA-BL-A5ZZ-01 19 12763187 12763187 T A MAN2B1 Missense_Mutation p.T640S 0.26 tolerated(1) benign(0.006) TCGA-BL-A5ZZ-01 19 12800096 12800096 A T FBXW9 Silent p.A437A 0.16 TCGA-BL-A5ZZ-01 19 13915874 13915874 C T ZSWIM4 Silent p.I208I 0.28 TCGA-BL-A5ZZ-01 19 19746265 19746265 C T GMIP Missense_Mutation p.E507K 0.20 deleterious(0) possibly_damaging(0.684) TCGA-BL-A5ZZ-01 19 2353075 2353075 G T LLfos-48D6.1 Intron 0.08 TCGA-BL-A5ZZ-01 19 36593977 36593977 G A WDR62 Splice_Site p.X1154_splice 0.16 TCGA-BL-A5ZZ-01 19 37203292 37203292 C G ZNF567 5'UTR 0.29 TCGA-BL-A5ZZ-01 19 39868164 39868164 G A SAMD4B Missense_Mutation p.E382K 0.17 deleterious(0) possibly_damaging(0.566) TCGA-BL-A5ZZ-01 19 40316928 40316928 T A DYRK1B Splice_Site p.X471_splice 0.33 TCGA-BL-A5ZZ-01 19 40880474 40880474 C T PLD3 Silent p.I322I 0.17 TCGA-BL-A5ZZ-01 19 45535844 45535844 C T RELB Silent p.F348F 0.32 TCGA-BL-A5ZZ-01 19 45535937 45535937 C T RELB Silent p.V379V 0.20 TCGA-BL-A5ZZ-01 19 45593708 45593708 T C GEMIN7 Silent p.G112G 0.14 TCGA-BL-A5ZZ-01 19 46190952 46190952 C T SNRPD2 Silent p.E72E 0.26 TCGA-BL-A5ZZ-01 19 51918486 51918486 C T SIGLEC10 Missense_Mutation p.A427T 0.24 deleterious(0.02) possibly_damaging(0.868) TCGA-BL-A5ZZ-01 19 58445232 58445232 C G ZNF418 5'UTR 0.18 TCGA-BL-A5ZZ-01 1 110919739 110919739 C T SLC16A4 Missense_Mutation p.D359N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-BL-A5ZZ-01 1 11147898 11147898 C T EXOSC10 Missense_Mutation p.E302K 0.04 deleterious(0.05) probably_damaging(0.965) TCGA-BL-A5ZZ-01 1 114380501 114380501 G A PTPN22 Silent p.H507H 0.23 TCGA-BL-A5ZZ-01 1 115524069 115524069 C T SYCP1 Missense_Mutation p.S832F 0.16 deleterious(0.03) possibly_damaging(0.472) TCGA-BL-A5ZZ-01 1 119929336 119929336 C T HAO2 Missense_Mutation p.P218L 0.26 deleterious(0) probably_damaging(0.997) TCGA-BL-A5ZZ-01 1 144917576 144917576 G A PDE4DIP Missense_Mutation p.R510C 0.10 tolerated(0.09) benign(0.008) TCGA-BL-A5ZZ-01 1 151260368 151260368 G A ZNF687 Missense_Mutation p.R534H 0.21 deleterious(0) probably_damaging(0.998) TCGA-BL-A5ZZ-01 1 161596010 161596010 C T FCGR3B Missense_Mutation p.G204S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BL-A5ZZ-01 1 173934254 173934254 G A RC3H1 Missense_Mutation p.R447C 0.21 deleterious(0) probably_damaging(0.999) TCGA-BL-A5ZZ-01 1 179414167 179414167 C G AXDND1 Silent p.L542L 0.23 TCGA-BL-A5ZZ-01 1 212860210 212860210 G A BATF3 Missense_Mutation p.P103S 0.22 tolerated(0.15) probably_damaging(0.995) TCGA-BL-A5ZZ-01 1 229631244 229631245 - T NUP133 Frame_Shift_Ins p.N348Kfs*3 0.16 TCGA-BL-A5ZZ-01 1 233296080 233296080 T C PCNXL2 Missense_Mutation p.I1156V 0.12 tolerated(0.23) benign(0.005) TCGA-BL-A5ZZ-01 1 237801747 237801747 G T RYR2 Nonsense_Mutation p.G2295* 0.25 TCGA-BL-A5ZZ-01 1 27101401 27101402 - C ARID1A Frame_Shift_Ins p.M1564Hfs*8 0.24 TCGA-BL-A5ZZ-01 1 34666499 34666499 T A C1orf94 Missense_Mutation p.L379Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-BL-A5ZZ-01 1 44085040 44085040 C T PTPRF Silent p.I1576I 0.24 TCGA-BL-A5ZZ-01 1 8390437 8390437 C T SLC45A1 Missense_Mutation p.P295L 0.12 deleterious(0.04) benign(0.005) TCGA-BL-A5ZZ-01 1 898615 898615 G T KLHL17 Missense_Mutation p.R390L 0.24 tolerated(1) benign(0.139) TCGA-BL-A5ZZ-01 20 35627252 35627252 T A RBL1 Silent p.A1039A 0.21 TCGA-BL-A5ZZ-01 20 52775663 52775663 C T CYP24A1 Splice_Site p.X331_splice 0.18 TCGA-BL-A5ZZ-01 20 61525370 61525370 C G DIDO1 Missense_Mutation p.E917Q 0.28 possibly_damaging(0.827) TCGA-BL-A5ZZ-01 20 61526264 61526264 C T DIDO1 Silent p.V778V 0.20 TCGA-BL-A5ZZ-01 20 62191928 62191928 G C HELZ2 Missense_Mutation p.I2468M 0.23 tolerated(0.06) probably_damaging(0.983) TCGA-BL-A5ZZ-01 20 62374261 62374261 G A SLC2A4RG Missense_Mutation p.R361Q 0.08 deleterious(0) probably_damaging(0.946) TCGA-BL-A5ZZ-01 20 62844970 62844970 A C MYT1 Missense_Mutation p.K534T 0.10 probably_damaging(0.988) TCGA-BL-A5ZZ-01 21 16337127 16337127 C T NRIP1 Missense_Mutation p.M1129I 0.40 tolerated(0.05) benign(0.053) TCGA-BL-A5ZZ-01 21 37833708 37833708 C T CLDN14 Missense_Mutation p.A96T 0.06 tolerated(0.08) benign(0.011) TCGA-BL-A5ZZ-01 21 43852229 43852229 G C UBASH3A Missense_Mutation p.K396N 0.34 deleterious(0) benign(0.254) TCGA-BL-A5ZZ-01 22 21354342 21354342 T C THAP7 Missense_Mutation p.K253E 0.25 deleterious(0) possibly_damaging(0.762) TCGA-BL-A5ZZ-01 22 22989635 22989635 C T GGTLC2 Missense_Mutation p.P129S 0.13 tolerated(0.28) benign(0) TCGA-BL-A5ZZ-01 22 24562743 24562743 C G CABIN1 Nonsense_Mutation p.S1715* 0.17 TCGA-BL-A5ZZ-01 22 36537277 36537277 G A APOL3 Nonsense_Mutation p.Q394* 0.22 TCGA-BL-A5ZZ-01 2 128938565 128938565 C T UGGT1 Silent p.I1334I 0.19 TCGA-BL-A5ZZ-01 2 136023144 136023144 T A ZRANB3 Missense_Mutation p.D500V 0.38 deleterious(0.01) benign(0.323) TCGA-BL-A5ZZ-01 2 145156752 145156752 C G ZEB2 Missense_Mutation p.E668Q 0.15 tolerated(0.5) possibly_damaging(0.815) TCGA-BL-A5ZZ-01 2 157406137 157406137 C T GPD2 Missense_Mutation p.R227W 0.12 deleterious(0) probably_damaging(1) TCGA-BL-A5ZZ-01 2 160605213 160605213 G A MARCH7 Missense_Mutation p.R471K 0.15 deleterious(0.02) benign(0.284) TCGA-BL-A5ZZ-01 2 168107319 168107319 C G XIRP2 Missense_Mutation p.N3139K 0.16 benign(0.082) TCGA-BL-A5ZZ-01 2 170557858 170557858 C T PHOSPHO2 Missense_Mutation p.A126V 0.12 deleterious(0) probably_damaging(0.998) TCGA-BL-A5ZZ-01 2 178936980 178936980 G A PDE11A Missense_Mutation p.A62V 0.12 tolerated(0.11) benign(0.007) TCGA-BL-A5ZZ-01 2 18112414 18112414 T C KCNS3 Missense_Mutation p.C47R 0.04 deleterious(0.02) probably_damaging(0.97) TCGA-BL-A5ZZ-01 2 198266854 198266854 C T SF3B1 Missense_Mutation p.G693D 0.33 deleterious(0) probably_damaging(0.988) TCGA-BL-A5ZZ-01 2 231149118 231149118 A T SP140 Missense_Mutation p.Q519L 0.23 tolerated(0.63) benign(0.002) TCGA-BL-A5ZZ-01 2 235943646 235943646 G A SH3BP4 5'UTR 0.18 TCGA-BL-A5ZZ-01 2 241656777 241656777 A T KIF1A 3'UTR 0.13 TCGA-BL-A5ZZ-01 2 48033979 48033979 A G MSH6 Missense_Mutation p.T1355A 0.37 tolerated_low_confidence(0.8) benign(0.001) TCGA-BL-A5ZZ-01 2 69173521 69173521 G A GKN2 Silent p.D129D 0.37 TCGA-BL-A5ZZ-01 2 69408959 69408959 G A ANTXR1 Silent p.T377T 0.37 TCGA-BL-A5ZZ-01 2 70057013 70057013 G A GMCL1 5'UTR 0.25 TCGA-BL-A5ZZ-01 2 74753923 74753923 G A AUP1 3'UTR 0.17 TCGA-BL-A5ZZ-01 2 79364434 79364434 C G REG1P RNA 0.26 TCGA-BL-A5ZZ-01 2 90198975 90198975 C T IGKV1D-12 Missense_Mutation p.R46W 0.18 deleterious(0.03) benign(0.116) TCGA-BL-A5ZZ-01 3 123005625 123005625 C T ADCY5 Silent p.V1188V 0.30 TCGA-BL-A5ZZ-01 3 132394703 132394703 A T UBA5 Missense_Mutation p.N356I 0.25 tolerated(0.21) benign(0.015) TCGA-BL-A5ZZ-01 3 133336155 133336155 C G TOPBP1 Missense_Mutation p.G1203A 0.44 tolerated(0.54) benign(0.028) TCGA-BL-A5ZZ-01 3 133372192 133372192 C T TOPBP1 Missense_Mutation p.D307N 0.19 tolerated(0.18) benign(0.005) TCGA-BL-A5ZZ-01 3 140695353 140695353 G A SLC25A36 3'UTR 0.42 TCGA-BL-A5ZZ-01 3 19574902 19574902 C T KCNH8 Nonsense_Mutation p.Q879* 0.15 TCGA-BL-A5ZZ-01 3 25665795 25665795 T C TOP2B Missense_Mutation p.M825V 0.04 tolerated(0.07) benign(0.021) TCGA-BL-A5ZZ-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.31 deleterious(0) probably_damaging(0.962) TCGA-BL-A5ZZ-01 3 52802578 52802578 C T NEK4 Missense_Mutation p.E46K 0.21 deleterious(0) probably_damaging(0.98) TCGA-BL-A5ZZ-01 4 126367500 126367500 C A FAT4 Missense_Mutation p.Q2416K 0.24 probably_damaging(0.966) TCGA-BL-A5ZZ-01 4 140375394 140375394 C T RAB33B Silent p.S15S 0.21 TCGA-BL-A5ZZ-01 4 154557551 154557551 C G KIAA0922 Missense_Mutation p.I1552M 0.22 tolerated(0.13) benign(0.055) TCGA-BL-A5ZZ-01 4 155526064 155526064 C T FGG Silent p.L428L 0.21 TCGA-BL-A5ZZ-01 4 187078792 187078792 C T FAM149A Silent p.H216H 0.20 TCGA-BL-A5ZZ-01 4 187455522 187455522 C A MTNR1A Missense_Mutation p.R125L 0.24 deleterious(0) probably_damaging(0.997) TCGA-BL-A5ZZ-01 4 56885582 56885582 G T CEP135 Nonsense_Mutation p.E1026* 0.13 TCGA-BL-A5ZZ-01 5 112901666 112901666 A G YTHDC2 Missense_Mutation p.E931G 0.22 deleterious(0) benign(0.339) TCGA-BL-A5ZZ-01 5 132270588 132270588 C G AFF4 Missense_Mutation p.G57R 0.17 deleterious(0) probably_damaging(1) TCGA-BL-A5ZZ-01 5 137803517 137803517 C A EGR1 Missense_Mutation p.S460Y 0.23 deleterious_low_confidence(0) unknown(0) TCGA-BL-A5ZZ-01 5 13871682 13871682 G C DNAH5 Missense_Mutation p.L1197V 0.11 benign(0.364) TCGA-BL-A5ZZ-01 5 140262123 140262123 C T PCDHA13 Silent p.I90I 0.21 TCGA-BL-A5ZZ-01 5 140262847 140262847 G A PCDHA13 Missense_Mutation p.G332S 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-BL-A5ZZ-01 5 140581476 140581476 C T PCDHB11 Missense_Mutation p.A710V 0.24 tolerated_low_confidence(0.13) benign(0.002) TCGA-BL-A5ZZ-01 5 149276282 149276282 C T PDE6A Missense_Mutation p.E489K 0.16 tolerated(1) benign(0.051) TCGA-BL-A5ZZ-01 5 175110212 175110212 G A HRH2 5'UTR 0.22 TCGA-BL-A5ZZ-01 5 5303689 5303689 C G ADAMTS16 Nonsense_Mutation p.S999* 0.19 TCGA-BL-A5ZZ-01 5 82789629 82789629 C T VCAN Silent p.P209P 0.25 TCGA-BL-A5ZZ-01 5 95734679 95734679 C G PCSK1 Missense_Mutation p.E498Q 0.38 tolerated(0.23) benign(0.011) TCGA-BL-A5ZZ-01 6 106969162 106969162 C G AIM1 Nonsense_Mutation p.S952* 0.23 TCGA-BL-A5ZZ-01 6 106991426 106991426 C T AIM1 Missense_Mutation p.H1257Y 0.23 tolerated(0.09) possibly_damaging(0.461) TCGA-BL-A5ZZ-01 6 106992480 106992480 C T AIM1 Missense_Mutation p.H1284Y 0.31 tolerated(0.08) probably_damaging(1) TCGA-BL-A5ZZ-01 6 107232029 107232029 G A MIR587 RNA 0.23 TCGA-BL-A5ZZ-01 6 121481250 121481250 C G TBC1D32 Splice_Site p.X894_splice 0.24 TCGA-BL-A5ZZ-01 6 13799101 13799101 T C MCUR1 Silent p.L273L 0.30 TCGA-BL-A5ZZ-01 6 146720821 146720821 G A GRM1 Silent p.G882G 0.24 TCGA-BL-A5ZZ-01 6 26056317 26056317 C G HIST1H1C Missense_Mutation p.G114R 0.25 tolerated(0.41) possibly_damaging(0.709) TCGA-BL-A5ZZ-01 6 28195601 28195601 C T ZSCAN9 Missense_Mutation p.S185F 0.32 deleterious(0.01) benign(0.202) TCGA-BL-A5ZZ-01 6 29323429 29323429 G A OR5V1 Missense_Mutation p.P182S 0.19 deleterious(0.01) probably_damaging(1) TCGA-BL-A5ZZ-01 6 30690766 30690766 C T TUBB Missense_Mutation p.P80S 0.10 deleterious_low_confidence(0.03) benign(0.028) TCGA-BL-A5ZZ-01 6 33287435 33287435 C T DAXX Silent p.E554E 0.33 TCGA-BL-A5ZZ-01 6 33287908 33287908 C T DAXX Missense_Mutation p.E449K 0.19 tolerated(0.06) benign(0.242) TCGA-BL-A5ZZ-01 6 87865442 87865442 G T ZNF292 Nonsense_Mutation p.E45* 0.50 TCGA-BL-A5ZZ-01 7 140301916 140301916 C T DENND2A Silent p.E94E 0.31 TCGA-BL-A5ZZ-01 7 141776022 141776022 A G MGAM Intron 0.18 TCGA-BL-A5ZZ-01 7 44747679 44747679 C T OGDH 3'UTR 0.38 TCGA-BL-A5ZZ-01 7 913003 913003 A G SUN1 3'UTR 0.30 TCGA-BL-A5ZZ-01 8 116599379 116599379 T A TRPS1 Missense_Mutation p.H850L 0.31 deleterious_low_confidence(0.02) benign(0.023) TCGA-BL-A5ZZ-01 8 123964380 123964380 C A ZHX2 Missense_Mutation p.N210K 0.24 tolerated(0.6) benign(0.007) TCGA-BL-A5ZZ-01 8 139697487 139697487 G A COL22A1 Silent p.L977L 0.18 TCGA-BL-A5ZZ-01 8 143427114 143427114 G A TSNARE1 Silent p.A76A 0.26 TCGA-BL-A5ZZ-01 8 143846022 143846022 G A LYNX1 3'UTR 0.21 TCGA-BL-A5ZZ-01 8 143994827 143994827 C T CYP11B2 Missense_Mutation p.R332Q 0.30 deleterious(0) probably_damaging(1) TCGA-BL-A5ZZ-01 8 144997122 144997122 G C PLEC Silent p.L2462L 0.19 TCGA-BL-A5ZZ-01 8 17611293 17611293 G T MTUS1 Missense_Mutation p.S675Y 0.35 tolerated(0.13) possibly_damaging(0.601) TCGA-BL-A5ZZ-01 8 17611348 17611348 G A MTUS1 Missense_Mutation p.P657S 0.37 tolerated(1) benign(0.006) TCGA-BL-A5ZZ-01 8 28196811 28196811 G T PNOC Missense_Mutation p.Q127H 0.11 deleterious(0) probably_damaging(0.997) TCGA-BL-A5ZZ-01 8 28196868 28196868 G C PNOC Missense_Mutation p.Q146H 0.18 deleterious(0) probably_damaging(0.997) TCGA-BL-A5ZZ-01 8 56686088 56686088 G A TGS1 5'UTR 0.54 TCGA-BL-A5ZZ-01 8 59492193 59492193 G A SDCBP Missense_Mutation p.R197Q 0.11 deleterious(0.03) benign(0.099) TCGA-BL-A5ZZ-01 9 115421835 115421835 G A KIAA1958 Missense_Mutation p.C546Y 0.16 tolerated(0.38) probably_damaging(0.951) TCGA-BL-A5ZZ-01 9 115652089 115652089 G A SLC46A2 Silent p.I291I 0.40 TCGA-BL-A5ZZ-01 9 116267684 116267684 C T RGS3 Intron 0.21 TCGA-BL-A5ZZ-01 9 116930501 116930501 G T COL27A1 Silent p.T222T 0.16 TCGA-BL-A5ZZ-01 9 117568352 117568352 G A TNFSF15 5'UTR 0.45 TCGA-BL-A5ZZ-01 9 124936902 124936902 C T MORN5 Silent p.N145N 0.22 TCGA-BL-A5ZZ-01 9 131768953 131768953 G C NUP188 Missense_Mutation p.R1749T 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BL-A5ZZ-01 9 17786443 17786443 A G SH3GL2 Silent p.P84P 0.14 TCGA-BL-A5ZZ-01 9 2115849 2115849 C T SMARCA2 Missense_Mutation p.R1162C 0.31 possibly_damaging(0.898) TCGA-BL-A5ZZ-01 9 72833324 72833324 C T MAMDC2 Nonsense_Mutation p.R575* 0.21 TCGA-BL-A5ZZ-01 9 97082694 97082694 C T NUTM2F Silent p.E388E 0.50 TCGA-BL-A5ZZ-01 X 100912134 100912134 C T ARMCX2 Silent p.E147E 0.28 TCGA-BL-A5ZZ-01 X 101138730 101138730 A C ZMAT1 Missense_Mutation p.S557A 0.20 deleterious(0.03) possibly_damaging(0.672) TCGA-BL-A5ZZ-01 X 115304525 115304525 G T AGTR2 Missense_Mutation p.S331I 0.41 deleterious(0.05) benign(0.037) TCGA-BL-A5ZZ-01 X 119077193 119077193 G A NKAP Silent p.L126L 0.33 TCGA-BL-A5ZZ-01 X 123022477 123022477 G A XIAP Missense_Mutation p.D296N 0.17 deleterious(0) probably_damaging(1) TCGA-BL-A5ZZ-01 X 147106395 147106395 G A FMR1NB Missense_Mutation p.D215N 0.34 tolerated(1) benign(0) TCGA-BL-A5ZZ-01 X 151899926 151899926 T C MAGEA12 Missense_Mutation p.K292R 0.20 tolerated(0.36) benign(0.015) TCGA-BL-A5ZZ-01 X 153247406 153247406 G A TMEM187 5'UTR 0.53 TCGA-BL-A5ZZ-01 X 153580630 153580630 C A FLNA Missense_Mutation p.V2230L 0.33 deleterious(0.05) probably_damaging(0.952) TCGA-BL-A5ZZ-01 X 3242586 3242586 C G MXRA5 Missense_Mutation p.L380F 0.42 deleterious(0) probably_damaging(0.999) TCGA-BL-A5ZZ-01 X 38080591 38080591 C T SRPX 5'Flank 0.34 TCGA-BL-A5ZZ-01 X 41333266 41333266 C T NYX Missense_Mutation p.A187V 0.56 tolerated(0.35) benign(0.002) TCGA-BL-A5ZZ-01 X 41782186 41782186 C T CASK Missense_Mutation p.G19E 0.15 tolerated(0.31) benign(0.006) TCGA-BL-A5ZZ-01 X 44928929 44928929 C T KDM6A Nonsense_Mutation p.Q677* 0.43 TCGA-BL-A5ZZ-01 X 44928992 44928992 C T KDM6A Missense_Mutation p.H698Y 0.40 tolerated(0.12) benign(0.162) TCGA-BL-A5ZZ-01 X 44929157 44929157 C G KDM6A Missense_Mutation p.Q753E 0.48 deleterious(0.05) benign(0.016) TCGA-BL-A5ZZ-01 X 44929551 44929551 C G KDM6A Nonsense_Mutation p.S884* 0.30 TCGA-BL-A5ZZ-01 X 44929589 44929589 C T KDM6A Silent p.L897L 0.30 TCGA-BL-A5ZZ-01 X 70523534 70523534 C T ITGB1BP2 Nonsense_Mutation p.R176* 0.35 TCGA-BL-A5ZZ-01 X 77150858 77150858 G A MAGT1 Missense_Mutation p.A49V 0.27 tolerated(0.36) benign(0.011) TCGA-BL-A5ZZ-01 X 78427378 78427378 T C GPR174 Missense_Mutation p.Y292H 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A0S7-01 11 77924751 77924751 G T USP35 Silent p.P983P 0.15 TCGA-BT-A0S7-01 12 26217667 26217667 C A RASSF8 Missense_Mutation p.P114T 0.26 tolerated(0.15) benign(0.247) TCGA-BT-A0S7-01 12 53012081 53012081 G A KRT73 Silent p.G76G 0.32 TCGA-BT-A0S7-01 12 69968295 69968295 A C FRS2 Missense_Mutation p.K363Q 0.02 tolerated(0.37) possibly_damaging(0.738) TCGA-BT-A0S7-01 14 105685542 105685542 C T BRF1 Missense_Mutation p.V469M 0.29 deleterious(0.02) benign(0.244) TCGA-BT-A0S7-01 14 32902841 32902841 T A AKAP6 Missense_Mutation p.S48T 0.29 tolerated(0.15) benign(0.033) TCGA-BT-A0S7-01 14 91738888 91738888 G A CCDC88C 3'UTR 0.30 TCGA-BT-A0S7-01 15 45028800 45028800 C A TRIM69 5'UTR 0.41 TCGA-BT-A0S7-01 15 50782647 50782647 C A USP8 Missense_Mutation p.P720Q 0.04 deleterious(0) probably_damaging(0.994) TCGA-BT-A0S7-01 15 72030241 72030241 C T THSD4 Nonsense_Mutation p.R601* 0.50 TCGA-BT-A0S7-01 16 16297362 16297362 C T ABCC6 Silent p.K301K 0.30 TCGA-BT-A0S7-01 16 703599 703599 G A WDR90 Silent p.R436R 0.46 TCGA-BT-A0S7-01 17 16593762 16593762 G A CCDC144A Silent p.P16P 0.14 TCGA-BT-A0S7-01 17 34958251 34958281 CTCGACCGTCCGGGGCGCGACCTGGGGTCGC - MRM1 Frame_Shift_Del p.T6Sfs*20 0.26 TCGA-BT-A0S7-01 17 71433929 71433929 G A SDK2 Missense_Mutation p.H317Y 0.35 tolerated(0.13) probably_damaging(0.974) TCGA-BT-A0S7-01 19 16612266 16612266 G T C19orf44 Missense_Mutation p.L221F 0.18 deleterious(0) probably_damaging(0.998) TCGA-BT-A0S7-01 19 54327327 54327327 G A NLRP12 Silent p.T34T 0.35 TCGA-BT-A0S7-01 19 9045585 9045585 C T MUC16 Missense_Mutation p.E12016K 0.56 benign(0.001) TCGA-BT-A0S7-01 1 104117881 104117881 C A AMY2B Missense_Mutation p.D305E 0.33 tolerated(0.54) benign(0.006) TCGA-BT-A0S7-01 1 111495013 111495013 C T LRIF1 Missense_Mutation p.V165I 0.13 tolerated(0.06) benign(0.001) TCGA-BT-A0S7-01 1 114308928 114308928 A G RSBN1 Silent p.L695L 0.10 TCGA-BT-A0S7-01 1 156376645 156376645 C T C1orf61 Intron 0.34 TCGA-BT-A0S7-01 1 186143685 186143685 A G HMCN1 Missense_Mutation p.Y5285C 0.14 probably_damaging(0.995) TCGA-BT-A0S7-01 1 228444535 228444535 G A OBSCN Missense_Mutation p.R1590K 0.06 benign(0.117) TCGA-BT-A0S7-01 1 228582354 228582355 AG - TRIM11 3'UTR 0.44 TCGA-BT-A0S7-01 1 243668581 243668581 T C AKT3 Silent p.Q470Q 0.51 TCGA-BT-A0S7-01 1 35919962 35919962 C G KIAA0319L Splice_Site p.X594_splice 0.14 TCGA-BT-A0S7-01 1 89637586 89637586 C A GBP7 Silent p.V11V 0.04 TCGA-BT-A0S7-01 20 40735463 40735463 T G PTPRT Missense_Mutation p.E1118A 0.28 tolerated(0.28) probably_damaging(0.996) TCGA-BT-A0S7-01 20 49211102 49211102 G A FAM65C Nonsense_Mutation p.Q730* 0.04 TCGA-BT-A0S7-01 22 17119559 17119559 G C TPTEP1 RNA 0.36 TCGA-BT-A0S7-01 2 166245543 166245543 A G SCN2A Missense_Mutation p.K1743E 0.24 tolerated(0.07) benign(0.031) TCGA-BT-A0S7-01 2 50850546 50850546 C T NRXN1 Missense_Mutation p.G380E 0.31 deleterious(0) probably_damaging(1) TCGA-BT-A0S7-01 2 74432845 74432845 G T MTHFD2 Missense_Mutation p.V39F 0.13 deleterious(0) possibly_damaging(0.756) TCGA-BT-A0S7-01 3 50324241 50324241 G A LSMEM2 Silent p.A103A 0.12 TCGA-BT-A0S7-01 4 143159109 143159109 C T INPP4B Nonsense_Mutation p.W248* 0.34 TCGA-BT-A0S7-01 4 143159110 143159110 C G INPP4B Missense_Mutation p.W248S 0.33 deleterious(0.02) probably_damaging(1) TCGA-BT-A0S7-01 4 155530879 155530879 C T FGG Missense_Mutation p.S190N 0.21 deleterious(0) probably_damaging(0.926) TCGA-BT-A0S7-01 4 1803564 1803564 C T FGFR3 Missense_Mutation p.R248C 0.38 deleterious(0) probably_damaging(0.977) TCGA-BT-A0S7-01 4 49040081 49040081 A T CWH43 Missense_Mutation p.I563F 0.20 tolerated(0.12) possibly_damaging(0.786) TCGA-BT-A0S7-01 4 90857417 90857417 G A MMRN1 Silent p.L862L 0.18 TCGA-BT-A0S7-01 5 140346900 140346900 G T PCDHAC2 Missense_Mutation p.Q183H 0.52 tolerated(0.07) probably_damaging(0.95) TCGA-BT-A0S7-01 5 160721255 160721255 G A GABRB2 Nonsense_Mutation p.R458* 0.41 TCGA-BT-A0S7-01 5 50137809 50137809 C T PARP8 Silent p.D824D 0.12 TCGA-BT-A0S7-01 5 665124 665124 C T TPPP 3'UTR 0.57 TCGA-BT-A0S7-01 5 68524147 68524147 T C MRPS36 Missense_Mutation p.I76T 0.49 tolerated(0.18) benign(0.402) TCGA-BT-A0S7-01 6 167590551 167590552 - C TCP10L2 Frame_Shift_Ins p.G144Wfs*17 0.11 TCGA-BT-A0S7-01 6 31734406 31734406 T C VWA7 Missense_Mutation p.E673G 0.33 tolerated(0.12) benign(0.053) TCGA-BT-A0S7-01 6 31901504 31901504 C T CFB Missense_Mutation p.S125L 0.43 tolerated(0.21) benign(0) TCGA-BT-A0S7-01 6 45332969 45332969 T C SUPT3H 5'UTR 0.35 TCGA-BT-A0S7-01 6 83818634 83818650 GATTATTTCCTCTTCTT - DOPEY1 Frame_Shift_Del p.L110Kfs*15 0.10 TCGA-BT-A0S7-01 7 96636997 96636997 G A DLX6 Missense_Mutation p.G162R 0.21 deleterious(0) probably_damaging(1) TCGA-BT-A0S7-01 8 113668395 113668395 T A CSMD3 Missense_Mutation p.I998F 0.17 deleterious(0) probably_damaging(0.993) TCGA-BT-A0S7-01 8 113678640 113678640 T A CSMD3 Silent p.P894P 0.35 TCGA-BT-A0S7-01 8 145533230 145533230 C T HSF1 Missense_Mutation p.R106C 0.35 deleterious(0.02) probably_damaging(0.96) TCGA-BT-A0S7-01 8 3076926 3076926 T C CSMD1 Missense_Mutation p.Y1508C 0.31 probably_damaging(0.978) TCGA-BT-A0S7-01 X 44896934 44896934 G - KDM6A Frame_Shift_Del 0.33 TCGA-BT-A0YX-01 10 103531253 103531253 G C FGF8 Missense_Mutation p.I137M 0.17 deleterious(0.01) possibly_damaging(0.881) TCGA-BT-A0YX-01 10 104857052 104857052 G A NT5C2 Missense_Mutation p.T256I 0.15 deleterious(0.01) possibly_damaging(0.734) TCGA-BT-A0YX-01 10 105903397 105903397 C T WDR96 Silent p.R1315R 0.10 TCGA-BT-A0YX-01 10 115985891 115985891 G A TDRD1 Missense_Mutation p.E1031K 0.30 deleterious(0) probably_damaging(0.953) TCGA-BT-A0YX-01 10 116702491 116702491 G A TRUB1 Missense_Mutation p.R125Q 0.19 tolerated(0.59) benign(0.002) TCGA-BT-A0YX-01 10 11994206 11994206 C G UPF2 Missense_Mutation p.D965H 0.21 deleterious(0.01) possibly_damaging(0.861) TCGA-BT-A0YX-01 10 120809348 120809348 C G EIF3A Missense_Mutation p.E875Q 0.26 deleterious(0.03) unknown(0) TCGA-BT-A0YX-01 10 124152833 124152833 C T PLEKHA1 Silent p.F39F 0.22 TCGA-BT-A0YX-01 10 124358515 124358515 G T DMBT1 Missense_Mutation p.R1061L 0.24 tolerated(0.18) unknown(0) TCGA-BT-A0YX-01 10 124358521 124358521 C G DMBT1 Nonsense_Mutation p.S1063* 0.21 TCGA-BT-A0YX-01 10 127429114 127429114 G A EDRF1 Silent p.L688L 0.17 TCGA-BT-A0YX-01 10 23408326 23408326 G A MSRB2 Silent p.L130L 0.20 TCGA-BT-A0YX-01 10 27323766 27323766 C G ANKRD26 Missense_Mutation p.E1205Q 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A0YX-01 10 27323874 27323874 C T ANKRD26 Missense_Mutation p.D1169N 0.22 deleterious(0.03) benign(0.059) TCGA-BT-A0YX-01 10 27536544 27536544 C G RP11-85G18.6 Intron 0.20 TCGA-BT-A0YX-01 10 28151455 28151455 C T ARMC4 Missense_Mutation p.A903T 0.23 deleterious(0) possibly_damaging(0.901) TCGA-BT-A0YX-01 10 33200926 33200926 G A ITGB1 Silent p.V532V 0.25 TCGA-BT-A0YX-01 10 33224454 33224454 C T ITGB1 Silent p.L11L 0.14 TCGA-BT-A0YX-01 10 395346 395346 C G DIP2C Missense_Mutation p.E1012Q 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-BT-A0YX-01 10 61005268 61005268 G A PHYHIPL Missense_Mutation p.G350S 0.30 deleterious(0.05) probably_damaging(1) TCGA-BT-A0YX-01 10 6143281 6143281 G A RBM17 Silent p.L57L 0.14 TCGA-BT-A0YX-01 10 63977986 63977986 C T RTKN2 Missense_Mutation p.E286K 0.14 tolerated(0.18) benign(0.005) TCGA-BT-A0YX-01 10 64239677 64239677 C T ZNF365 Intron 0.22 TCGA-BT-A0YX-01 10 64415153 64415153 G A ZNF365 Intron 0.22 TCGA-BT-A0YX-01 10 72360406 72360406 G C PRF1 Missense_Mutation p.L85V 0.10 tolerated(0.24) benign(0.013) TCGA-BT-A0YX-01 10 73122191 73122191 C T SLC29A3 Silent p.L418L 0.24 TCGA-BT-A0YX-01 10 75574801 75574801 G A CAMK2G Missense_Mutation p.S548L 0.34 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-BT-A0YX-01 10 75574821 75574821 G C CAMK2G Silent p.L541L 0.33 TCGA-BT-A0YX-01 10 85984808 85984808 T G LRIT2 Missense_Mutation p.K58T 0.20 tolerated(0.4) benign(0.326) TCGA-BT-A0YX-01 10 88718387 88718387 C G SNCG 5'Flank 0.21 TCGA-BT-A0YX-01 10 93572839 93572839 C G TNKS2 Missense_Mutation p.S100C 0.17 deleterious(0) probably_damaging(0.994) TCGA-BT-A0YX-01 10 94405256 94405256 G A KIF11 Missense_Mutation p.D802N 0.16 tolerated(0.16) benign(0.004) TCGA-BT-A0YX-01 10 95132825 95132827 AGG - MYOF In_Frame_Del p.P773del 0.18 TCGA-BT-A0YX-01 10 96540313 96540313 C T CYP2C19 Missense_Mutation p.S180F 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-BT-A0YX-01 10 98715053 98715053 G A LCOR Missense_Mutation p.E226K 0.24 deleterious(0.03) possibly_damaging(0.636) TCGA-BT-A0YX-01 10 99519006 99519006 G C ZFYVE27 Missense_Mutation p.Q400H 0.08 deleterious(0.01) possibly_damaging(0.763) TCGA-BT-A0YX-01 11 102100669 102100669 T C YAP1 Nonstop_Mutation p.*505Qext*6 0.30 TCGA-BT-A0YX-01 11 105789548 105789548 C G GRIA4 Missense_Mutation p.I460M 0.27 deleterious(0.04) possibly_damaging(0.771) TCGA-BT-A0YX-01 11 108160459 108160459 G A ATM Missense_Mutation p.G1456D 0.18 deleterious(0) benign(0.309) TCGA-BT-A0YX-01 11 111636995 111636995 C T PPP2R1B Missense_Mutation p.E31K 0.16 deleterious(0) probably_damaging(0.981) TCGA-BT-A0YX-01 11 113697974 113697974 G A USP28 Nonsense_Mutation p.Q390* 0.16 TCGA-BT-A0YX-01 11 114320818 114320818 C G REXO2 3'UTR 0.20 TCGA-BT-A0YX-01 11 118361911 118361911 G A KMT2A Missense_Mutation p.G1566E 0.15 probably_damaging(1) TCGA-BT-A0YX-01 11 11942014 11942014 G A USP47 Missense_Mutation p.M329I 0.27 deleterious(0.01) benign(0.372) TCGA-BT-A0YX-01 11 124310898 124310898 G A OR8B8 Silent p.F28F 0.14 TCGA-BT-A0YX-01 11 124482954 124482954 C A PANX3 Nonsense_Mutation p.S87* 0.21 TCGA-BT-A0YX-01 11 126139077 126139077 C T FOXRED1 5'UTR 0.14 TCGA-BT-A0YX-01 11 126139117 126139117 C T FOXRED1 Silent p.L6L 0.21 TCGA-BT-A0YX-01 11 128781855 128781855 C T KCNJ5 Silent p.I229I 0.23 TCGA-BT-A0YX-01 11 129762750 129762750 C T NFRKB Missense_Mutation p.E12K 0.22 tolerated_low_confidence(0.15) unknown(0) TCGA-BT-A0YX-01 11 134064592 134064592 C T NCAPD3 Missense_Mutation p.E553K 0.14 deleterious(0.01) possibly_damaging(0.694) TCGA-BT-A0YX-01 11 2154279 2154279 G C IGF2 Missense_Mutation p.L217V 0.20 tolerated(0.12) benign(0.024) TCGA-BT-A0YX-01 11 46727044 46727044 C G ZNF408 Silent p.L598L 0.25 TCGA-BT-A0YX-01 11 47602301 47602301 C T NDUFS3 Intron 0.20 TCGA-BT-A0YX-01 11 47752962 47752962 C G FNBP4 Missense_Mutation p.D658H 0.27 tolerated(0.12) possibly_damaging(0.45) TCGA-BT-A0YX-01 11 47753046 47753046 C T FNBP4 Missense_Mutation p.E630K 0.21 deleterious(0.04) probably_damaging(0.98) TCGA-BT-A0YX-01 11 47858484 47858484 G A NUP160 Silent p.I299I 0.15 TCGA-BT-A0YX-01 11 55594852 55594852 C T OR5L2 Missense_Mutation p.S53F 0.25 deleterious(0.04) benign(0.02) TCGA-BT-A0YX-01 11 56757051 56757051 C T OR5AK2 Silent p.I221I 0.21 TCGA-BT-A0YX-01 11 57156683 57156683 C T PRG2 Missense_Mutation p.E56K 0.23 tolerated(0.82) benign(0.276) TCGA-BT-A0YX-01 11 58723268 58723268 C T GLYATL1 Missense_Mutation p.S257F 0.31 deleterious(0) probably_damaging(0.993) TCGA-BT-A0YX-01 11 60610305 60610305 G A CCDC86 Silent p.P236P 0.21 TCGA-BT-A0YX-01 11 61644427 61644427 G C FADS3 Silent p.L298L 0.23 TCGA-BT-A0YX-01 11 62288785 62288785 G C AHNAK Silent p.L4368L 0.20 TCGA-BT-A0YX-01 11 62384199 62384199 G C B3GAT3 Missense_Mutation p.Q230E 0.23 tolerated(0.2) benign(0) TCGA-BT-A0YX-01 11 64564578 64564578 C T MAP4K2 Missense_Mutation p.E455K 0.14 tolerated(0.33) benign(0.017) TCGA-BT-A0YX-01 11 65268871 65268871 G A MALAT1 RNA 0.20 TCGA-BT-A0YX-01 11 65268881 65268881 G A MALAT1 RNA 0.23 TCGA-BT-A0YX-01 11 65268884 65268884 G A MALAT1 RNA 0.24 TCGA-BT-A0YX-01 11 65269080 65269080 G A MALAT1 RNA 0.29 TCGA-BT-A0YX-01 11 65269178 65269178 G A MALAT1 RNA 0.11 TCGA-BT-A0YX-01 11 65269702 65269702 G C MALAT1 RNA 0.13 TCGA-BT-A0YX-01 11 65269914 65269914 G C MALAT1 RNA 0.18 TCGA-BT-A0YX-01 11 65271095 65271095 G C MALAT1 RNA 0.26 TCGA-BT-A0YX-01 11 65271394 65271394 G C MALAT1 RNA 0.24 TCGA-BT-A0YX-01 11 65272844 65272844 G C MALAT1 RNA 0.20 TCGA-BT-A0YX-01 11 65340999 65340999 G A FAM89B Missense_Mutation p.D153N 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-BT-A0YX-01 11 65341111 65341111 G A FAM89B Silent p.%3D 0.16 TCGA-BT-A0YX-01 11 65341248 65341248 G C FAM89B 3'UTR 0.36 TCGA-BT-A0YX-01 11 65731532 65731532 C T SART1 Intron 0.19 TCGA-BT-A0YX-01 11 65983668 65983668 G C PACS1 Missense_Mutation p.E247Q 0.26 tolerated(0.06) probably_damaging(0.973) TCGA-BT-A0YX-01 11 66460711 66460711 C T SPTBN2 Silent p.A1600A 0.24 TCGA-BT-A0YX-01 11 67133035 67133035 G C CLCF1 Missense_Mutation p.L84V 0.21 tolerated(0.26) benign(0.008) TCGA-BT-A0YX-01 11 67166318 67166318 C T PPP1CA Missense_Mutation p.D264N 0.29 deleterious_low_confidence(0.01) benign(0.075) TCGA-BT-A0YX-01 11 67166321 67166321 C T PPP1CA Missense_Mutation p.E263K 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-BT-A0YX-01 11 67166578 67166578 C T PPP1CA Missense_Mutation p.D205N 0.24 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-BT-A0YX-01 11 67172956 67172956 G A TBC1D10C Silent p.K113K 0.24 TCGA-BT-A0YX-01 11 67787235 67787235 G C ALDH3B1 Missense_Mutation p.E177Q 0.22 tolerated(0.09) benign(0.17) TCGA-BT-A0YX-01 11 6867346 6867346 C G OR10A5 Missense_Mutation p.L145V 0.17 deleterious(0.01) probably_damaging(0.912) TCGA-BT-A0YX-01 11 70049613 70049613 G A FADD Silent p.S16S 0.22 TCGA-BT-A0YX-01 11 70049620 70049620 G A FADD Missense_Mutation p.E19K 0.25 deleterious(0) possibly_damaging(0.756) TCGA-BT-A0YX-01 11 7981789 7981789 G A NLRP10 Missense_Mutation p.A457V 0.20 tolerated(0.07) benign(0.008) TCGA-BT-A0YX-01 11 804358 804358 C G PIDD Missense_Mutation p.E11Q 0.25 tolerated_low_confidence(0.29) benign(0.003) TCGA-BT-A0YX-01 11 82643575 82643575 G C C11orf82 Missense_Mutation p.E399Q 0.24 tolerated(0.05) possibly_damaging(0.804) TCGA-BT-A0YX-01 11 86160971 86160971 C T ME3 Missense_Mutation p.R364K 0.25 tolerated(1) benign(0.001) TCGA-BT-A0YX-01 11 94335120 94335120 G A PIWIL4 Missense_Mutation p.G514R 0.19 deleterious(0) probably_damaging(0.989) TCGA-BT-A0YX-01 12 100649888 100649888 C G DEPDC4 Missense_Mutation p.D273H 0.21 deleterious(0) possibly_damaging(0.871) TCGA-BT-A0YX-01 12 101711260 101711260 G C UTP20 Missense_Mutation p.E853Q 0.24 deleterious(0.02) possibly_damaging(0.725) TCGA-BT-A0YX-01 12 102036345 102036345 G C MYBPC1 Missense_Mutation p.E247Q 0.27 tolerated(0.05) benign(0.119) TCGA-BT-A0YX-01 12 1025667 1025667 G A RAD52 Intron 0.16 TCGA-BT-A0YX-01 12 108589501 108589501 G A WSCD2 5'UTR 0.17 TCGA-BT-A0YX-01 12 110463573 110463573 G A ANKRD13A Silent p.V276V 0.32 TCGA-BT-A0YX-01 12 112096587 112096587 C T BRAP Missense_Mutation p.E392K 0.18 tolerated(0.26) benign(0.297) TCGA-BT-A0YX-01 12 117685219 117685219 C G NOS1 Missense_Mutation p.M953I 0.19 tolerated(0.2) benign(0.213) TCGA-BT-A0YX-01 12 120166373 120166373 C T CIT Missense_Mutation p.M1175I 0.23 deleterious(0.02) benign(0.391) TCGA-BT-A0YX-01 12 121882022 121882022 G C KDM2B Silent p.L748L 0.29 TCGA-BT-A0YX-01 12 123875261 123875261 G A SETD8 Missense_Mutation p.E73K 0.21 deleterious(0) possibly_damaging(0.851) TCGA-BT-A0YX-01 12 130830392 130830392 G A PIWIL1 Silent p.Q95Q 0.18 TCGA-BT-A0YX-01 12 131498798 131498798 G A GPR133 Silent p.L462L 0.07 TCGA-BT-A0YX-01 12 132515894 132515894 G C EP400 Intron 0.20 TCGA-BT-A0YX-01 12 21200106 21200106 G C SLCO1B7 Missense_Mutation p.E317Q 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-BT-A0YX-01 12 21680080 21680080 G A C12orf39 Silent p.E33E 0.19 TCGA-BT-A0YX-01 12 27066551 27066551 C T ASUN Silent p.E548E 0.24 TCGA-BT-A0YX-01 12 3103927 3103927 G A TEAD4 5'UTR 0.21 TCGA-BT-A0YX-01 12 32735372 32735372 G A FGD4 Missense_Mutation p.E191K 0.15 tolerated(0.24) benign(0.017) TCGA-BT-A0YX-01 12 40753217 40753217 G C LRRK2 Missense_Mutation p.Q2333H 0.20 tolerated(0.4) possibly_damaging(0.868) TCGA-BT-A0YX-01 12 48369179 48369179 G A COL2A1 Silent p.I1269I 0.21 TCGA-BT-A0YX-01 12 49176905 49176905 C T ADCY6 Missense_Mutation p.E105K 0.19 tolerated(0.18) benign(0.022) TCGA-BT-A0YX-01 12 49228219 49228219 G C DDX23 Missense_Mutation p.Q482E 0.24 deleterious(0) probably_damaging(0.973) TCGA-BT-A0YX-01 12 49231850 49231850 G C DDX23 Missense_Mutation p.S165C 0.18 deleterious(0) benign(0.436) TCGA-BT-A0YX-01 12 49434415 49434415 G A KMT2D Nonsense_Mutation p.Q2380* 0.31 TCGA-BT-A0YX-01 12 5020928 5020928 G A KCNA1 Silent p.E128E 0.18 TCGA-BT-A0YX-01 12 53460151 53460151 C G SPRYD3 Missense_Mutation p.E381Q 0.25 tolerated(0.41) possibly_damaging(0.69) TCGA-BT-A0YX-01 12 53460160 53460160 C T SPRYD3 Missense_Mutation p.E378K 0.23 tolerated(0.42) benign(0) TCGA-BT-A0YX-01 12 53911120 53911120 G C ATF7 Nonsense_Mutation p.S418* 0.29 TCGA-BT-A0YX-01 12 54756622 54756622 G A GPR84 Silent p.L338L 0.26 TCGA-BT-A0YX-01 12 56505295 56505295 G C PA2G4 Missense_Mutation p.Q367H 0.18 deleterious(0.03) benign(0.276) TCGA-BT-A0YX-01 12 56510496 56510496 C T RPL41 5'UTR 0.24 TCGA-BT-A0YX-01 12 56510503 56510503 C T RPL41 5'UTR 0.22 TCGA-BT-A0YX-01 12 56848060 56848060 C G MIP Missense_Mutation p.R113P 0.20 deleterious(0) probably_damaging(0.992) TCGA-BT-A0YX-01 12 56868840 56868840 G C GLS2 Silent p.L328L 0.21 TCGA-BT-A0YX-01 12 57441538 57441538 G A MYO1A Intron 0.17 TCGA-BT-A0YX-01 12 57619642 57619642 C T NXPH4 3'UTR 0.26 TCGA-BT-A0YX-01 12 58001129 58001129 G C DTX3 Missense_Mutation p.E161D 0.26 tolerated(0.62) benign(0.02) TCGA-BT-A0YX-01 12 63963010 63963010 C G DPY19L2 Missense_Mutation p.R707T 0.22 deleterious(0) possibly_damaging(0.694) TCGA-BT-A0YX-01 12 6690250 6690250 C G CHD4 Silent p.V1623V 0.22 TCGA-BT-A0YX-01 12 7079717 7079717 G C PHB2 5'UTR 0.18 TCGA-BT-A0YX-01 12 75900673 75900673 C T KRR1 Silent p.L94L 0.28 TCGA-BT-A0YX-01 12 78225383 78225383 G T NAV3 Nonsense_Mutation p.E48* 0.21 TCGA-BT-A0YX-01 12 88391905 88391905 G C C12orf50 Missense_Mutation p.L66V 0.29 tolerated(0.05) possibly_damaging(0.838) TCGA-BT-A0YX-01 12 936320 936320 G A WNK1 Missense_Mutation p.D349N 0.23 deleterious(0) possibly_damaging(0.524) TCGA-BT-A0YX-01 13 103298650 103298650 G A TPP2 Silent p.V800V 0.20 TCGA-BT-A0YX-01 13 103701788 103701788 G A SLC10A2 Missense_Mutation p.T257M 0.24 deleterious(0) probably_damaging(0.998) TCGA-BT-A0YX-01 13 108518440 108518440 C T FAM155A Missense_Mutation p.E169K 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BT-A0YX-01 13 111213942 111213942 G C RAB20 5'UTR 0.21 TCGA-BT-A0YX-01 13 20567555 20567555 G A ZMYM2 Missense_Mutation p.E115K 0.28 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BT-A0YX-01 13 20567608 20567608 G C ZMYM2 Missense_Mutation p.E132D 0.20 tolerated_low_confidence(0.31) benign(0.003) TCGA-BT-A0YX-01 13 21751269 21751269 G C MRP63 Missense_Mutation p.E72Q 0.22 tolerated(0.39) benign(0.03) TCGA-BT-A0YX-01 13 36229746 36229746 G A NBEA Nonsense_Mutation p.W2720* 0.22 TCGA-BT-A0YX-01 13 41515451 41515451 G A ELF1 Nonsense_Mutation p.Q288* 0.24 TCGA-BT-A0YX-01 13 41705016 41705016 C G KBTBD6 Missense_Mutation p.W544C 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 13 41705099 41705099 C T KBTBD6 Missense_Mutation p.E517K 0.16 tolerated(0.74) benign(0.025) TCGA-BT-A0YX-01 13 41706332 41706332 C G KBTBD6 Missense_Mutation p.E106Q 0.21 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 13 41943355 41943355 G C NAA16 Missense_Mutation p.R628T 0.14 tolerated(0.24) benign(0.063) TCGA-BT-A0YX-01 13 43180957 43180957 G C TNFSF11 Missense_Mutation p.G286A 0.21 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 13 50276524 50276524 C T KPNA3 Missense_Mutation p.D489N 0.16 tolerated(0.1) benign(0.305) TCGA-BT-A0YX-01 13 50299570 50299570 G A KPNA3 Nonsense_Mutation p.Q151* 0.24 TCGA-BT-A0YX-01 13 50299581 50299581 G A KPNA3 Missense_Mutation p.S147F 0.22 deleterious(0) probably_damaging(0.974) TCGA-BT-A0YX-01 13 73636362 73636362 A - KLF5 Frame_Shift_Del p.K209Nfs*24 0.17 TCGA-BT-A0YX-01 13 92560198 92560198 C T GPC5 Nonsense_Mutation p.Q430* 0.21 TCGA-BT-A0YX-01 14 104026370 104026370 C A BAG5 Nonsense_Mutation p.E419* 0.25 TCGA-BT-A0YX-01 14 104026577 104026577 C T BAG5 Missense_Mutation p.E350K 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 14 104037964 104037964 C G RP11-73M18.2 Nonsense_Mutation p.S56* 0.18 TCGA-BT-A0YX-01 14 105169764 105169764 C T INF2 Missense_Mutation p.R214C 0.18 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 14 105177451 105177451 C T INF2 Silent p.I782I 0.30 TCGA-BT-A0YX-01 14 20841487 20841487 G A TEP1 Silent p.L2252L 0.24 TCGA-BT-A0YX-01 14 20978929 20978929 C G RNASE10 Nonsense_Mutation p.S100* 0.22 TCGA-BT-A0YX-01 14 21863460 21863460 C T CHD8 Missense_Mutation p.E1727K 0.18 tolerated(0.68) benign(0.018) TCGA-BT-A0YX-01 14 22938145 22938145 C G TRDV3 Missense_Mutation p.D77H 0.26 deleterious(0.04) probably_damaging(0.984) TCGA-BT-A0YX-01 14 23524387 23524387 G A CDH24 Missense_Mutation p.S126F 0.12 deleterious(0) probably_damaging(0.975) TCGA-BT-A0YX-01 14 31574848 31574848 G C HECTD1 Nonsense_Mutation p.S2418* 0.29 TCGA-BT-A0YX-01 14 35786501 35786501 G C PSMA6 Missense_Mutation p.E244Q 0.14 deleterious(0.01) benign(0.045) TCGA-BT-A0YX-01 14 39762517 39762517 G A CTAGE5 Missense_Mutation p.D148N 0.08 tolerated(0.11) benign(0.02) TCGA-BT-A0YX-01 14 45658401 45658401 C G FANCM Missense_Mutation p.P1726A 0.25 tolerated(0.35) benign(0.003) TCGA-BT-A0YX-01 14 51196370 51196370 C T NIN Silent p.Q1983Q 0.25 TCGA-BT-A0YX-01 14 51204915 51204915 C T NIN Silent p.L1906L 0.23 TCGA-BT-A0YX-01 14 57741516 57741516 C G AP5M1 Missense_Mutation p.S210C 0.17 tolerated(0.15) possibly_damaging(0.729) TCGA-BT-A0YX-01 14 58831340 58831340 G A ARID4A Missense_Mutation p.E845K 0.14 deleterious_low_confidence(0) benign(0.115) TCGA-BT-A0YX-01 14 60923747 60923747 C T C14orf39 Missense_Mutation p.E416K 0.22 deleterious(0.01) benign(0) TCGA-BT-A0YX-01 14 73614734 73614734 G A PSEN1 Missense_Mutation p.E3K 0.25 deleterious_low_confidence(0) benign(0.002) TCGA-BT-A0YX-01 14 74086448 74086448 C T ACOT6 Missense_Mutation p.H177Y 0.15 tolerated(0.1) probably_damaging(0.929) TCGA-BT-A0YX-01 14 74179622 74179622 C G PNMA1 Missense_Mutation p.E241Q 0.22 deleterious(0.03) benign(0.029) TCGA-BT-A0YX-01 14 74180243 74180243 C T PNMA1 Missense_Mutation p.E34K 0.25 deleterious(0) possibly_damaging(0.89) TCGA-BT-A0YX-01 14 74824670 74824670 C G VRTN Nonsense_Mutation p.S395* 0.12 TCGA-BT-A0YX-01 14 76249706 76249706 C T TTLL5 Missense_Mutation p.S940F 0.20 deleterious(0.01) benign(0.367) TCGA-BT-A0YX-01 14 76249833 76249833 C T TTLL5 Silent p.I982I 0.15 TCGA-BT-A0YX-01 14 77492255 77492255 G C IRF2BPL Silent p.L627L 0.22 TCGA-BT-A0YX-01 14 81950592 81950592 C G SEL1L Missense_Mutation p.E675Q 0.21 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 14 96807895 96807895 G A ATG2B Silent p.L296L 0.22 TCGA-BT-A0YX-01 14 96912857 96912857 G C AK7 Silent p.V261V 0.31 TCGA-BT-A0YX-01 15 21071224 21071224 C T POTEB2 Missense_Mutation p.M129I 0.21 tolerated(0.16) benign(0.029) TCGA-BT-A0YX-01 15 35082582 35082582 G C ACTC1 3'UTR 0.31 TCGA-BT-A0YX-01 15 40920870 40920870 G C CASC5 Missense_Mutation p.L1885F 0.11 deleterious(0.02) possibly_damaging(0.823) TCGA-BT-A0YX-01 15 41229093 41229093 G C DLL4 Missense_Mutation p.K636N 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-BT-A0YX-01 15 42462051 42462051 C T VPS39 Silent p.V368V 0.23 TCGA-BT-A0YX-01 15 42568597 42568597 C T GANC Silent p.I27I 0.08 TCGA-BT-A0YX-01 15 43826784 43826784 G C PPIP5K1 3'UTR 0.20 TCGA-BT-A0YX-01 15 43873500 43873500 C T PPIP5K1 Silent p.G288G 0.16 TCGA-BT-A0YX-01 15 52069173 52069173 G A TMOD2 Missense_Mutation p.E151K 0.28 tolerated(0.46) benign(0.045) TCGA-BT-A0YX-01 15 53908309 53908309 G C WDR72 Silent p.L698L 0.10 TCGA-BT-A0YX-01 15 56130727 56130727 C T NEDD4 Missense_Mutation p.D1050N 0.26 deleterious(0) probably_damaging(0.937) TCGA-BT-A0YX-01 15 59387110 59387110 C A RNF111 3'UTR 0.24 TCGA-BT-A0YX-01 15 65255979 65255979 G A SPG21 Silent p.I303I 0.28 TCGA-BT-A0YX-01 15 65871820 65871820 C G VWA9 Missense_Mutation p.E438Q 0.22 tolerated(0.28) benign(0.007) TCGA-BT-A0YX-01 15 66161846 66161846 C G RAB11A 5'UTR 0.20 TCGA-BT-A0YX-01 15 73660074 73660074 C T HCN4 Missense_Mutation p.E180K 0.26 tolerated_low_confidence(0.43) unknown(0) TCGA-BT-A0YX-01 15 83776476 83776476 C G TM6SF1 Missense_Mutation p.S15W 0.15 tolerated(0.09) possibly_damaging(0.735) TCGA-BT-A0YX-01 15 85159706 85159706 C G ZSCAN2 Intron 0.28 TCGA-BT-A0YX-01 15 89398115 89398115 G A ACAN Missense_Mutation p.A767T 0.12 tolerated(0.36) benign(0.01) TCGA-BT-A0YX-01 15 91083274 91083274 C G CRTC3 Missense_Mutation p.Q46E 0.33 deleterious(0.02) benign(0.153) TCGA-BT-A0YX-01 15 91424753 91424753 G A FURIN Missense_Mutation p.R677Q 0.12 tolerated(0.24) benign(0) TCGA-BT-A0YX-01 16 11940562 11940562 G C RSL1D1 Missense_Mutation p.Q175E 0.23 tolerated(0.73) benign(0.038) TCGA-BT-A0YX-01 16 1756554 1756554 G A MAPK8IP3 Missense_Mutation p.E72K 0.35 deleterious(0.02) possibly_damaging(0.705) TCGA-BT-A0YX-01 16 2159441 2159441 G A PKD1 Silent p.I1909I 0.21 TCGA-BT-A0YX-01 16 23543988 23543988 C T EARS2 Missense_Mutation p.E353K 0.23 deleterious(0) probably_damaging(0.981) TCGA-BT-A0YX-01 16 23669929 23669929 C G DCTN5 Missense_Mutation p.F73L 0.24 tolerated(0.4) benign(0.013) TCGA-BT-A0YX-01 16 23706204 23706204 C G ERN2 Missense_Mutation p.D697H 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-BT-A0YX-01 16 2570863 2570863 G A AMDHD2 Silent p.G59G 0.12 TCGA-BT-A0YX-01 16 29883590 29883590 G A SEZ6L2 Missense_Mutation p.S874F 0.17 tolerated(0.06) benign(0.002) TCGA-BT-A0YX-01 16 30007709 30007709 C T INO80E Silent p.I26I 0.31 TCGA-BT-A0YX-01 16 31195651 31195651 C T FUS Nonsense_Mutation p.Q153* 0.23 TCGA-BT-A0YX-01 16 31228069 31228069 C T PYDC1 3'UTR 0.18 TCGA-BT-A0YX-01 16 3273910 3273910 C G ZNF200 Missense_Mutation p.K390N 0.18 deleterious(0.01) possibly_damaging(0.617) TCGA-BT-A0YX-01 16 3273931 3273931 C G ZNF200 Missense_Mutation p.E383D 0.16 deleterious(0.01) possibly_damaging(0.886) TCGA-BT-A0YX-01 16 3273959 3273959 C G ZNF200 Missense_Mutation p.G374A 0.14 deleterious(0.05) possibly_damaging(0.802) TCGA-BT-A0YX-01 16 3273997 3273997 C T ZNF200 Silent p.E361E 0.18 TCGA-BT-A0YX-01 16 3339455 3339455 C T ZNF263 Nonsense_Mutation p.Q317* 0.22 TCGA-BT-A0YX-01 16 3656547 3656547 C T SLX4 Missense_Mutation p.E230K 0.23 tolerated(0.61) benign(0.114) TCGA-BT-A0YX-01 16 4382347 4382347 G C GLIS2 Missense_Mutation p.E22D 0.20 tolerated(0.31) benign(0.424) TCGA-BT-A0YX-01 16 4412079 4412079 G A CORO7 Silent p.L495L 0.24 TCGA-BT-A0YX-01 16 4933745 4933745 C T PPL Silent p.Q1637Q 0.23 TCGA-BT-A0YX-01 16 50384019 50384019 G C BRD7 Missense_Mutation p.S169C 0.22 deleterious(0) possibly_damaging(0.743) TCGA-BT-A0YX-01 16 56623743 56623743 C T MT3 Intron 0.26 TCGA-BT-A0YX-01 16 56623770 56623770 C T MT3 Intron 0.27 TCGA-BT-A0YX-01 16 56659629 56659629 G A MT1E 5'UTR 0.28 TCGA-BT-A0YX-01 16 57269103 57269103 G A RSPRY1 Missense_Mutation p.E533K 0.24 tolerated(0.9) benign(0.023) TCGA-BT-A0YX-01 16 57269112 57269112 G A RSPRY1 Missense_Mutation p.D536N 0.22 tolerated(0.26) benign(0.394) TCGA-BT-A0YX-01 16 57283691 57283691 G A ARL2BP Missense_Mutation p.E74K 0.15 deleterious(0.01) possibly_damaging(0.665) TCGA-BT-A0YX-01 16 57918280 57918280 C T CNGB1 Missense_Mutation p.D1182N 0.20 tolerated(0.1) benign(0.016) TCGA-BT-A0YX-01 16 66436582 66436582 G A CDH5 Missense_Mutation p.R622Q 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-BT-A0YX-01 16 67198706 67198706 G C HSF4 5'UTR 0.17 TCGA-BT-A0YX-01 16 67428988 67428988 G C ZDHHC1 Missense_Mutation p.Q383E 0.12 tolerated_low_confidence(0.43) benign(0.001) TCGA-BT-A0YX-01 16 67662356 67662356 G A CTCF Silent p.Q534Q 0.24 TCGA-BT-A0YX-01 16 70296246 70296246 C T AARS Intron 0.21 TCGA-BT-A0YX-01 16 70817025 70817025 C G VAC14 Missense_Mutation p.G241A 0.25 tolerated(0.19) possibly_damaging(0.505) TCGA-BT-A0YX-01 16 75512842 75512842 G A CHST6 Silent p.L295L 0.20 TCGA-BT-A0YX-01 16 81934316 81934316 G A PLCG2 Silent p.T431T 0.24 TCGA-BT-A0YX-01 16 86600911 86600911 G A FOXC2 5'UTR 0.14 TCGA-BT-A0YX-01 16 89598329 89598329 C G SPG7 Silent p.L335L 0.09 TCGA-BT-A0YX-01 16 89998985 89998985 G A TUBB3 Missense_Mutation p.E22K 0.19 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-BT-A0YX-01 17 11865486 11865486 G C DNAH9 Missense_Mutation p.K4382N 0.20 probably_damaging(0.946) TCGA-BT-A0YX-01 17 17116970 17116970 C G FLCN Nonstop_Mutation p.*580Sext*135 0.23 TCGA-BT-A0YX-01 17 19689261 19689261 C G ULK2 Missense_Mutation p.R747T 0.24 deleterious(0.04) benign(0.003) TCGA-BT-A0YX-01 17 20859999 20859999 G A RP11-381P6.1 RNA 0.20 TCGA-BT-A0YX-01 17 2593932 2593932 G T CLUH Missense_Mutation p.Q1296K 0.17 tolerated_low_confidence(0.23) benign(0.039) TCGA-BT-A0YX-01 17 26943617 26943617 C A KIAA0100 Intron 0.20 TCGA-BT-A0YX-01 17 26945942 26945942 C T KIAA0100 Missense_Mutation p.R1897Q 0.22 deleterious(0.04) benign(0.099) TCGA-BT-A0YX-01 17 27051519 27051519 C G TLCD1 3'UTR 0.26 TCGA-BT-A0YX-01 17 27945892 27945892 C T CORO6 Nonsense_Mutation p.W183* 0.21 TCGA-BT-A0YX-01 17 29850554 29850554 C A RAB11FIP4 Missense_Mutation p.F318L 0.22 tolerated(1) benign(0.001) TCGA-BT-A0YX-01 17 31318969 31318969 C T SPACA3 Silent p.L5L 0.13 TCGA-BT-A0YX-01 17 33255056 33255056 G C CCT6B 3'UTR 0.08 TCGA-BT-A0YX-01 17 33507615 33507615 G A UNC45B Missense_Mutation p.E767K 0.17 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 17 34416051 34416051 C G CCL3 Missense_Mutation p.Q82H 0.20 deleterious(0.01) possibly_damaging(0.879) TCGA-BT-A0YX-01 17 3458046 3458046 C T TRPV3 Silent p.E33E 0.21 TCGA-BT-A0YX-01 17 35872727 35872727 C G DUSP14 Nonsense_Mutation p.S118* 0.17 TCGA-BT-A0YX-01 17 37618767 37618767 C T CDK12 Missense_Mutation p.S148L 0.19 unknown(0) TCGA-BT-A0YX-01 17 37884259 37884259 G C ERBB2 Missense_Mutation p.E1244Q 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-BT-A0YX-01 17 38318003 38318003 C A CASC3 Intron 0.12 TCGA-BT-A0YX-01 17 38319905 38319905 C T CASC3 Silent p.F319F 0.22 TCGA-BT-A0YX-01 17 38512341 38512341 G A RARA Missense_Mutation p.E418K 0.12 deleterious(0) benign(0.423) TCGA-BT-A0YX-01 17 38711549 38711549 G C CCR7 Silent p.L194L 0.37 TCGA-BT-A0YX-01 17 39550344 39550344 G C KRT31 Missense_Mutation p.S392C 0.22 tolerated(0.05) benign(0.004) TCGA-BT-A0YX-01 17 40260106 40260106 C T DHX58 Silent p.L233L 0.19 TCGA-BT-A0YX-01 17 40345373 40345373 C T GHDC Missense_Mutation p.G76E 0.29 tolerated(0.16) benign(0.077) TCGA-BT-A0YX-01 17 40622219 40622219 C A ATP6V0A1 Missense_Mutation p.Q136K 0.15 tolerated(0.06) probably_damaging(0.996) TCGA-BT-A0YX-01 17 40722180 40722180 C G MLX Missense_Mutation p.I273M 0.14 tolerated(0.05) probably_damaging(0.973) TCGA-BT-A0YX-01 17 41020734 41020734 C G AOC4P RNA 0.22 TCGA-BT-A0YX-01 17 41020753 41020753 C G AOC4P RNA 0.20 TCGA-BT-A0YX-01 17 41020777 41020777 C T AOC4P RNA 0.21 TCGA-BT-A0YX-01 17 41477529 41477529 G A ARL4D Silent p.L143L 0.35 TCGA-BT-A0YX-01 17 43195457 43195457 C - PLCD3 Frame_Shift_Del p.P389Qfs*67 0.11 TCGA-BT-A0YX-01 17 45384893 45384893 C G ITGB3 Missense_Mutation p.L731V 0.24 tolerated(0.24) probably_damaging(0.936) TCGA-BT-A0YX-01 17 4544957 4544957 G C ALOX15 5'UTR 0.21 TCGA-BT-A0YX-01 17 46239837 46239837 C G SKAP1 Silent p.L324L 0.19 TCGA-BT-A0YX-01 17 4877697 4877697 C T CAMTA2 Missense_Mutation p.D690N 0.17 tolerated(0.37) benign(0.003) TCGA-BT-A0YX-01 17 4904541 4904541 C T KIF1C Nonsense_Mutation p.Q70* 0.22 TCGA-BT-A0YX-01 17 4905849 4905849 C T KIF1C Silent p.L174L 0.21 TCGA-BT-A0YX-01 17 4925875 4925875 C G KIF1C Silent p.L833L 0.31 TCGA-BT-A0YX-01 17 56083263 56083263 C G SRSF1 Missense_Mutation p.D151H 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-BT-A0YX-01 17 57697484 57697484 G C CLTC 5'UTR 0.19 TCGA-BT-A0YX-01 17 58156203 58156203 C G HEATR6 Missense_Mutation p.E25Q 0.14 tolerated_low_confidence(0.11) benign(0.074) TCGA-BT-A0YX-01 17 60072581 60072581 C T MED13 Missense_Mutation p.E705K 0.30 tolerated(0.09) benign(0.135) TCGA-BT-A0YX-01 17 61842116 61842116 G A CCDC47 Missense_Mutation p.P119L 0.24 deleterious(0.01) benign(0.004) TCGA-BT-A0YX-01 17 62290676 62290676 G C TEX2 Missense_Mutation p.P301R 0.27 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 17 62493011 62493011 C G POLG2 Missense_Mutation p.D26H 0.26 deleterious_low_confidence(0.03) benign(0.259) TCGA-BT-A0YX-01 17 66270075 66270075 G A SLC16A6 Silent p.I123I 0.26 TCGA-BT-A0YX-01 17 66914280 66914280 C G ABCA8 Missense_Mutation p.R612T 0.18 deleterious(0) probably_damaging(0.987) TCGA-BT-A0YX-01 17 67187420 67187420 G C ABCA10 Missense_Mutation p.I636M 0.24 tolerated(0.1) benign(0.403) TCGA-BT-A0YX-01 17 7122147 7122147 C T DLG4 Intron 0.26 TCGA-BT-A0YX-01 17 72929594 72929594 G A OTOP2 Missense_Mutation p.R548H 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 17 72948414 72948414 C T HID1 Missense_Mutation p.M698I 0.31 tolerated(0.06) possibly_damaging(0.733) TCGA-BT-A0YX-01 17 76171137 76171137 C T TK1 Silent p.E169E 0.36 TCGA-BT-A0YX-01 17 76171139 76171139 C T TK1 Missense_Mutation p.E169K 0.36 deleterious(0.01) benign(0.44) TCGA-BT-A0YX-01 17 77078258 77078258 C G ENGASE Intron 0.38 TCGA-BT-A0YX-01 17 78353431 78353431 G A RNF213 Silent p.P4519P 0.24 TCGA-BT-A0YX-01 17 79226054 79226054 C A SLC38A10 Missense_Mutation p.G629V 0.23 tolerated(0.78) benign(0) TCGA-BT-A0YX-01 17 80616472 80616472 C G RAB40B Missense_Mutation p.E154Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 17 8111097 8111097 G T AURKB Missense_Mutation p.S37Y 0.18 deleterious(0.01) possibly_damaging(0.736) TCGA-BT-A0YX-01 17 8131452 8131452 C G CTC1 3'UTR 0.19 TCGA-BT-A0YX-01 17 9448576 9448576 C T STX8 Missense_Mutation p.R79K 0.21 deleterious(0.01) possibly_damaging(0.745) TCGA-BT-A0YX-01 18 18549123 18549123 C G ROCK1 Missense_Mutation p.R956T 0.28 tolerated(0.39) benign(0.002) TCGA-BT-A0YX-01 18 2547371 2547371 C G METTL4 Missense_Mutation p.E353Q 0.25 deleterious(0.03) probably_damaging(0.93) TCGA-BT-A0YX-01 18 2892354 2892354 G A EMILIN2 Silent p.Q743Q 0.24 TCGA-BT-A0YX-01 18 29795197 29795197 G A MEP1B Missense_Mutation p.D578N 0.07 tolerated(0.11) benign(0.097) TCGA-BT-A0YX-01 18 31709969 31709969 C G NOL4 Missense_Mutation p.D94H 0.25 tolerated(0.06) possibly_damaging(0.902) TCGA-BT-A0YX-01 18 32833853 32833853 C T ZSCAN30 Missense_Mutation p.R349K 0.19 deleterious(0.04) benign(0.276) TCGA-BT-A0YX-01 18 3508616 3508616 G C DLGAP1 Silent p.L841L 0.20 TCGA-BT-A0YX-01 18 43669842 43669842 C T ATP5A1 Missense_Mutation p.E144K 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-BT-A0YX-01 18 45368266 45368266 G C SMAD2 Missense_Mutation p.L446V 0.21 deleterious(0) probably_damaging(0.997) TCGA-BT-A0YX-01 18 48591846 48591846 G A SMAD4 Missense_Mutation p.E337K 0.26 deleterious(0.01) probably_damaging(1) TCGA-BT-A0YX-01 18 7023260 7023260 C T LAMA1 Silent p.G868G 0.19 TCGA-BT-A0YX-01 18 756831 756831 C G YES1 5'UTR 0.22 TCGA-BT-A0YX-01 18 9255144 9255144 G A ANKRD12 Missense_Mutation p.E627K 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.488) TCGA-BT-A0YX-01 19 10221062 10221062 G A PPAN Silent p.V295V 0.30 TCGA-BT-A0YX-01 19 10657553 10657553 G A ATG4D Missense_Mutation p.E178K 0.21 tolerated(0.08) possibly_damaging(0.869) TCGA-BT-A0YX-01 19 10657634 10657634 G A ATG4D Missense_Mutation p.E205K 0.32 deleterious(0.05) benign(0.197) TCGA-BT-A0YX-01 19 10663639 10663639 G T ATG4D Missense_Mutation p.D441Y 0.28 deleterious(0) possibly_damaging(0.906) TCGA-BT-A0YX-01 19 10692042 10692042 C T AP1M2 Silent p.L191L 0.28 TCGA-BT-A0YX-01 19 1111584 1111584 G A SBNO2 Silent p.L910L 0.21 TCGA-BT-A0YX-01 19 12805444 12805444 G C FBXW9 Missense_Mutation p.I214M 0.10 deleterious(0.05) benign(0.354) TCGA-BT-A0YX-01 19 13409682 13409682 C T CACNA1A Missense_Mutation p.R922Q 0.20 possibly_damaging(0.776) TCGA-BT-A0YX-01 19 14269281 14269281 C T LPHN1 Missense_Mutation p.E750K 0.26 deleterious(0.04) possibly_damaging(0.703) TCGA-BT-A0YX-01 19 14938601 14938601 C G OR7A5 Missense_Mutation p.M151I 0.28 tolerated_low_confidence(0.71) benign(0.006) TCGA-BT-A0YX-01 19 15871693 15871693 G A LLNLR-249E10.1 RNA 0.23 TCGA-BT-A0YX-01 19 16611956 16611956 C G C19orf44 Missense_Mutation p.S118C 0.31 deleterious(0) probably_damaging(0.988) TCGA-BT-A0YX-01 19 17000940 17000940 C T F2RL3 Silent p.R222R 0.31 TCGA-BT-A0YX-01 19 18305832 18305832 G C MPV17L2 Missense_Mutation p.R167P 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 19 19651906 19651906 C G CILP2 Missense_Mutation p.S148W 0.50 tolerated(0.18) benign(0.364) TCGA-BT-A0YX-01 19 2116613 2116613 C T AP3D1 Silent p.E664E 0.33 TCGA-BT-A0YX-01 19 32844356 32844356 G T ZNF507 Missense_Mutation p.R207I 0.26 tolerated(0.19) benign(0.207) TCGA-BT-A0YX-01 19 36349402 36349402 G A KIRREL2 Missense_Mutation p.E102K 0.16 deleterious(0) probably_damaging(0.971) TCGA-BT-A0YX-01 19 36349660 36349660 G C KIRREL2 Missense_Mutation p.G139A 0.23 deleterious(0) probably_damaging(0.979) TCGA-BT-A0YX-01 19 37130933 37130933 C G ZNF461 Missense_Mutation p.R105T 0.21 tolerated(0.1) benign(0.004) TCGA-BT-A0YX-01 19 38877342 38877342 C T GGN Missense_Mutation p.R187K 0.24 tolerated_low_confidence(0.15) unknown(0) TCGA-BT-A0YX-01 19 39008108 39008108 G A RYR1 Silent p.E3265E 0.25 TCGA-BT-A0YX-01 19 39061261 39061261 G A RYR1 Silent p.R4558R 0.21 TCGA-BT-A0YX-01 19 41770632 41770632 C T HNRNPUL1 Missense_Mutation p.T75I 0.50 tolerated(0.23) unknown(0) TCGA-BT-A0YX-01 19 41892596 41892596 G C EXOSC5 Missense_Mutation p.S217W 0.33 deleterious(0) probably_damaging(0.918) TCGA-BT-A0YX-01 19 43233301 43233301 G C PSG3 Missense_Mutation p.S406C 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-BT-A0YX-01 19 44301925 44301925 C T LYPD5 Missense_Mutation p.E192K 0.16 tolerated(0.92) benign(0.012) TCGA-BT-A0YX-01 19 44537161 44537161 C G ZNF222 Nonsense_Mutation p.S485* 0.16 TCGA-BT-A0YX-01 19 44739461 44739461 G A ZNF227 Missense_Mutation p.G293E 0.27 tolerated(0.44) benign(0.154) TCGA-BT-A0YX-01 19 45391663 45391663 C G PVRL2 3'UTR 0.20 TCGA-BT-A0YX-01 19 45541150 45541150 C T RELB 3'UTR 0.33 TCGA-BT-A0YX-01 19 45655522 45655522 G A NKPD1 Silent p.L725L 0.28 TCGA-BT-A0YX-01 19 45910365 45910367 CTC TT CD3EAP Frame_Shift_Del p.S13Ffs*23 0.18 TCGA-BT-A0YX-01 19 48967834 48967834 G C KCNJ14 Missense_Mutation p.E371Q 0.21 tolerated(0.46) possibly_damaging(0.565) TCGA-BT-A0YX-01 19 49132338 49132338 C G SPHK2 Missense_Mutation p.L425V 0.15 tolerated(0.16) possibly_damaging(0.54) TCGA-BT-A0YX-01 19 49132817 49132817 C G SPHK2 Missense_Mutation p.F584L 0.25 tolerated(0.06) benign(0.029) TCGA-BT-A0YX-01 19 49362759 49362759 G C PLEKHA4 Missense_Mutation p.S220C 0.20 deleterious(0) possibly_damaging(0.789) TCGA-BT-A0YX-01 19 49464356 49464356 C G BAX 3'UTR 0.06 TCGA-BT-A0YX-01 19 49814319 49814319 C G SLC6A16 Missense_Mutation p.E96Q 0.23 tolerated(0.29) benign(0.244) TCGA-BT-A0YX-01 19 50099726 50099726 G A PRR12 Missense_Mutation p.E712K 0.37 possibly_damaging(0.486) TCGA-BT-A0YX-01 19 50209292 50209292 G A CPT1C Missense_Mutation p.R364K 0.23 tolerated(0.19) benign(0.257) TCGA-BT-A0YX-01 19 53855026 53855026 C G ZNF845 Missense_Mutation p.F366L 0.25 tolerated(0.66) benign(0.153) TCGA-BT-A0YX-01 19 54194177 54194177 G C MIR520A RNA 0.20 TCGA-BT-A0YX-01 19 54646543 54646543 G A CNOT3 5'UTR 0.36 TCGA-BT-A0YX-01 19 54646674 54646674 C G CNOT3 5'UTR 0.23 TCGA-BT-A0YX-01 19 54646863 54646863 G C CNOT3 Missense_Mutation p.D12H 0.13 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 19 54646887 54646887 G A CNOT3 Missense_Mutation p.E20K 0.12 deleterious(0) probably_damaging(0.994) TCGA-BT-A0YX-01 19 54724400 54724400 G A LILRB3 Missense_Mutation p.S419L 0.24 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 19 54746131 54746131 C T LILRA6 Silent p.G42G 0.13 TCGA-BT-A0YX-01 19 55610164 55610164 C A PPP1R12C Silent p.R313R 0.19 TCGA-BT-A0YX-01 19 55689630 55689630 C T SYT5 Silent p.K62K 0.24 TCGA-BT-A0YX-01 19 56153796 56153796 C T ZNF580 5'UTR 0.26 TCGA-BT-A0YX-01 19 57932476 57932476 C G ZNF17 Nonsense_Mutation p.S539* 0.20 TCGA-BT-A0YX-01 19 58361369 58361369 G A ZNF587 5'UTR 0.27 TCGA-BT-A0YX-01 19 7591755 7591755 C T MCOLN1 Nonsense_Mutation p.R172* 0.20 TCGA-BT-A0YX-01 19 8000015 8000015 C G TIMM44 Missense_Mutation p.E110Q 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-BT-A0YX-01 19 847830 847830 G A PRTN3 Missense_Mutation p.G211D 0.08 deleterious(0.04) probably_damaging(0.993) TCGA-BT-A0YX-01 19 8503337 8503337 G A MARCH2 Silent p.L216L 0.27 TCGA-BT-A0YX-01 19 8999056 8999056 G A MUC16 Silent p.F13596F 0.19 TCGA-BT-A0YX-01 19 9767306 9767306 C T ZNF562 Missense_Mutation p.E89K 0.26 deleterious(0.02) benign(0.011) TCGA-BT-A0YX-01 1 10381906 10381906 G A KIF1B Silent p.L737L 0.20 TCGA-BT-A0YX-01 1 10725233 10725233 C G CASZ1 Missense_Mutation p.E138Q 0.16 deleterious_low_confidence(0.05) probably_damaging(0.936) TCGA-BT-A0YX-01 1 109103109 109103109 C T FAM102B Missense_Mutation p.S20L 0.21 tolerated(0.08) possibly_damaging(0.707) TCGA-BT-A0YX-01 1 110882500 110882500 C T RBM15 Missense_Mutation p.S158F 0.15 deleterious(0.05) benign(0.029) TCGA-BT-A0YX-01 1 11184592 11184592 G C MTOR Missense_Mutation p.L2209V 0.15 deleterious(0) probably_damaging(0.992) TCGA-BT-A0YX-01 1 111854982 111854982 C G CHIA Missense_Mutation p.L76V 0.26 deleterious(0.02) benign(0.157) TCGA-BT-A0YX-01 1 11333510 11333510 C T UBIAD1 5'UTR 0.24 TCGA-BT-A0YX-01 1 113460506 113460506 C T SLC16A1 Nonsense_Mutation p.W174* 0.22 TCGA-BT-A0YX-01 1 120529700 120529700 C G NOTCH2 Missense_Mutation p.E253Q 0.19 tolerated(0.14) benign(0.115) TCGA-BT-A0YX-01 1 12333105 12333105 C T VPS13D Nonsense_Mutation p.Q717* 0.21 TCGA-BT-A0YX-01 1 12333134 12333134 C G VPS13D Missense_Mutation p.F726L 0.18 benign(0) TCGA-BT-A0YX-01 1 146399560 146399560 G C NBPF12 Missense_Mutation p.D167H 0.14 probably_damaging(0.937) TCGA-BT-A0YX-01 1 151498241 151498241 G T CGN Nonsense_Mutation p.E580* 0.17 TCGA-BT-A0YX-01 1 152328793 152328793 G A FLG2 Missense_Mutation p.S490F 0.26 unknown(0) TCGA-BT-A0YX-01 1 152785377 152785377 G T LCE1B 3'UTR 0.17 TCGA-BT-A0YX-01 1 152944714 152944714 C T SPRR4 3'UTR 0.40 TCGA-BT-A0YX-01 1 153085095 153085095 A G SPRR2F Missense_Mutation p.S39P 0.19 unknown(0) TCGA-BT-A0YX-01 1 154233401 154233401 C A UBAP2L Missense_Mutation p.S871Y 0.16 deleterious(0) probably_damaging(0.982) TCGA-BT-A0YX-01 1 154897577 154897577 G A PMVK 3'UTR 0.22 TCGA-BT-A0YX-01 1 155172609 155172609 G A THBS3 Silent p.I317I 0.25 TCGA-BT-A0YX-01 1 155264172 155264172 C T PKLR Missense_Mutation p.D324N 0.23 deleterious(0.04) benign(0.011) TCGA-BT-A0YX-01 1 155450350 155450350 C G ASH1L Missense_Mutation p.D771H 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.776) TCGA-BT-A0YX-01 1 157485321 157485321 C T FCRL5 3'UTR 0.41 TCGA-BT-A0YX-01 1 157504671 157504671 G A FCRL5 Missense_Mutation p.H472Y 0.26 deleterious(0.02) benign(0.154) TCGA-BT-A0YX-01 1 158323802 158323802 C G CD1E Missense_Mutation p.F8L 0.18 tolerated(0.23) benign(0.043) TCGA-BT-A0YX-01 1 158390393 158390393 C G OR10K2 Missense_Mutation p.Q88H 0.25 tolerated(0.25) benign(0.021) TCGA-BT-A0YX-01 1 158908911 158908911 G C PYHIN1 Missense_Mutation p.R151S 0.24 deleterious(0.03) possibly_damaging(0.499) TCGA-BT-A0YX-01 1 159805105 159805105 G C SLAMF8 3'UTR 0.34 TCGA-BT-A0YX-01 1 160156493 160156493 C T ATP1A4 3'UTR 0.14 TCGA-BT-A0YX-01 1 160914989 160914989 C T ITLN2 Missense_Mutation p.V307I 0.20 tolerated(0.67) benign(0) TCGA-BT-A0YX-01 1 161139447 161139447 C T PPOX Intron 0.17 TCGA-BT-A0YX-01 1 161166037 161166037 G A ADAMTS4 Silent p.V338V 0.19 TCGA-BT-A0YX-01 1 171509701 171509701 G C PRRC2C Missense_Mutation p.Q1030H 0.19 unknown(0) TCGA-BT-A0YX-01 1 171621260 171621260 C T MYOC Silent p.E164E 0.19 TCGA-BT-A0YX-01 1 173839997 173839997 C G ZBTB37 Missense_Mutation p.L212V 0.17 tolerated(0.3) benign(0.343) TCGA-BT-A0YX-01 1 17395563 17395563 G A PADI2 Silent p.F658F 0.21 TCGA-BT-A0YX-01 1 17395644 17395644 G A PADI2 Silent p.F631F 0.20 TCGA-BT-A0YX-01 1 17575710 17575710 C A PADI3 Silent p.L26L 0.13 TCGA-BT-A0YX-01 1 179851926 179851926 G A TOR1AIP1 Missense_Mutation p.E97K 0.29 deleterious_low_confidence(0) benign(0.411) TCGA-BT-A0YX-01 1 180775197 180775197 G C XPR1 Splice_Site p.X150_splice 0.25 TCGA-BT-A0YX-01 1 180775240 180775240 G C XPR1 Missense_Mutation p.D164H 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 1 183194782 183194782 G A LAMC2 Silent p.L331L 0.24 TCGA-BT-A0YX-01 1 183212553 183212553 C G LAMC2 3'UTR 0.26 TCGA-BT-A0YX-01 1 183387492 183387492 C T NMNAT2 5'UTR 0.27 TCGA-BT-A0YX-01 1 185902803 185902803 G C HMCN1 Missense_Mutation p.D559H 0.29 probably_damaging(0.924) TCGA-BT-A0YX-01 1 186324879 186324879 G A TPR Missense_Mutation p.S637F 0.21 possibly_damaging(0.485) TCGA-BT-A0YX-01 1 192780193 192780193 C G RGS2 Missense_Mutation p.F119L 0.29 deleterious(0) possibly_damaging(0.656) TCGA-BT-A0YX-01 1 202411574 202411574 G A PPP1R12B Splice_Site p.X514_splice 0.20 TCGA-BT-A0YX-01 1 203054957 203054957 C T MYOG Missense_Mutation p.E45K 0.23 tolerated(0.72) benign(0.14) TCGA-BT-A0YX-01 1 203453266 203453266 C G PRELP Silent p.L318L 0.20 TCGA-BT-A0YX-01 1 203667370 203667370 C G ATP2B4 Missense_Mutation p.F93L 0.24 tolerated(0.11) probably_damaging(0.995) TCGA-BT-A0YX-01 1 203693027 203693027 G C ATP2B4 Missense_Mutation p.G1015R 0.27 deleterious(0.01) probably_damaging(1) TCGA-BT-A0YX-01 1 203743841 203743841 G A LAX1 3'UTR 0.32 TCGA-BT-A0YX-01 1 204379015 204379015 C G PPP1R15B Missense_Mutation p.D509H 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-BT-A0YX-01 1 204379192 204379192 C T PPP1R15B Missense_Mutation p.E450K 0.17 deleterious(0.01) possibly_damaging(0.803) TCGA-BT-A0YX-01 1 204379760 204379760 C A PPP1R15B Silent p.L260L 0.20 TCGA-BT-A0YX-01 1 209605571 209605571 G C MIR205HG RNA 0.16 TCGA-BT-A0YX-01 1 210411352 210411352 C T SERTAD4 Missense_Mutation p.S16L 0.21 deleterious(0) probably_damaging(0.992) TCGA-BT-A0YX-01 1 213032118 213032118 C A FLVCR1 Missense_Mutation p.F108L 0.32 tolerated(0.05) benign(0.169) TCGA-BT-A0YX-01 1 215256745 215256745 C G KCNK2 Missense_Mutation p.S6W 0.22 deleterious_low_confidence(0) benign(0.027) TCGA-BT-A0YX-01 1 21889741 21889741 G A ALPL Missense_Mutation p.E146K 0.20 tolerated(0.08) possibly_damaging(0.9) TCGA-BT-A0YX-01 1 220213549 220213549 C G EPRS Missense_Mutation p.E37Q 0.13 tolerated(0.19) benign(0.017) TCGA-BT-A0YX-01 1 221053221 221053221 C T HLX Missense_Mutation p.P8S 0.33 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-BT-A0YX-01 1 222904853 222904853 G A BROX Missense_Mutation p.D382N 0.12 tolerated(0.26) benign(0.015) TCGA-BT-A0YX-01 1 226180638 226180638 G A SDE2 Missense_Mutation p.R102W 0.33 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 1 227261667 227261667 G C CDC42BPA Missense_Mutation p.A878G 0.25 tolerated(0.1) benign(0.072) TCGA-BT-A0YX-01 1 235357527 235357527 C G ARID4B Splice_Site p.X643_splice 0.19 TCGA-BT-A0YX-01 1 237774219 237774219 G A RYR2 Missense_Mutation p.R1614H 0.21 benign(0.18) TCGA-BT-A0YX-01 1 241964444 241964444 G C WDR64 Missense_Mutation p.R1058T 0.23 deleterious(0) benign(0.358) TCGA-BT-A0YX-01 1 243328908 243328908 G C CEP170 Nonsense_Mutation p.S785* 0.11 TCGA-BT-A0YX-01 1 247319833 247319833 C G ZNF124 3'UTR 0.29 TCGA-BT-A0YX-01 1 26288494 26288494 G C PAFAH2 Missense_Mutation p.L389V 0.25 tolerated(0.11) benign(0.446) TCGA-BT-A0YX-01 1 27106166 27106166 G C ARID1A Missense_Mutation p.G1926A 0.26 benign(0.004) TCGA-BT-A0YX-01 1 28178068 28178068 C G PPP1R8 3'UTR 0.40 TCGA-BT-A0YX-01 1 29070328 29070328 G C YTHDF2 Missense_Mutation p.E516Q 0.32 deleterious(0) probably_damaging(0.934) TCGA-BT-A0YX-01 1 29609213 29609213 G A PTPRU Missense_Mutation p.E632K 0.25 deleterious(0.03) benign(0.184) TCGA-BT-A0YX-01 1 33245110 33245110 C T YARS Missense_Mutation p.R450H 0.29 deleterious_low_confidence(0.02) benign(0.013) TCGA-BT-A0YX-01 1 35654606 35654606 C G SFPQ Missense_Mutation p.L565F 0.06 tolerated(0.06) possibly_damaging(0.86) TCGA-BT-A0YX-01 1 39797236 39797236 G C MACF1 Intron 0.20 TCGA-BT-A0YX-01 1 43893963 43893963 G A SZT2 Silent p.L1267L 0.24 TCGA-BT-A0YX-01 1 43905293 43905293 C G SZT2 Missense_Mutation p.L2242V 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-BT-A0YX-01 1 47614449 47614449 G A CYP4A22 Missense_Mutation p.E514K 0.05 tolerated_low_confidence(0.23) benign(0.001) TCGA-BT-A0YX-01 1 54644891 54644891 G C CYB5RL Missense_Mutation p.I225M 0.37 deleterious(0) probably_damaging(0.982) TCGA-BT-A0YX-01 1 55136238 55136238 G C MROH7 Silent p.L486L 0.22 TCGA-BT-A0YX-01 1 60336747 60336747 G T HOOK1 Nonsense_Mutation p.E661* 0.31 TCGA-BT-A0YX-01 1 60359206 60359206 C G CYP2J2 3'UTR 0.25 TCGA-BT-A0YX-01 1 65304176 65304176 T A JAK1 Missense_Mutation p.Q980L 0.20 tolerated(1) benign(0.087) TCGA-BT-A0YX-01 1 6592664 6592664 C T NOL9 Missense_Mutation p.R465K 0.23 tolerated(0.44) possibly_damaging(0.557) TCGA-BT-A0YX-01 1 75699699 75699699 C T SLC44A5 Missense_Mutation p.M275I 0.22 tolerated(1) benign(0) TCGA-BT-A0YX-01 1 78163603 78163603 A G USP33 Silent p.P872P 0.25 TCGA-BT-A0YX-01 1 82456494 82456494 G C LPHN2 Missense_Mutation p.D1293H 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.712) TCGA-BT-A0YX-01 1 8418325 8418325 G C RERE Missense_Mutation p.P1424A 0.20 unknown(0) TCGA-BT-A0YX-01 1 86554904 86554904 G C COL24A1 Missense_Mutation p.Q554E 0.25 tolerated(0.48) benign(0.079) TCGA-BT-A0YX-01 1 89426873 89426873 G C CCBL2 Missense_Mutation p.S255C 0.20 deleterious(0) possibly_damaging(0.563) TCGA-BT-A0YX-01 1 90049431 90049431 G C LRRC8B Missense_Mutation p.E408Q 0.19 deleterious(0.05) possibly_damaging(0.478) TCGA-BT-A0YX-01 1 909923 909923 G C PLEKHN1 Missense_Mutation p.E602Q 0.27 tolerated_low_confidence(0.07) probably_damaging(0.947) TCGA-BT-A0YX-01 1 92193314 92193314 G C TGFBR3 Missense_Mutation p.L263V 0.19 tolerated(1) benign(0.001) TCGA-BT-A0YX-01 1 93649605 93649605 C T CCDC18 Nonsense_Mutation p.Q123* 0.23 TCGA-BT-A0YX-01 1 9801223 9801223 G A CLSTN1 Missense_Mutation p.S483F 0.19 deleterious(0.01) benign(0.392) TCGA-BT-A0YX-01 20 10632342 10632342 G T JAG1 Missense_Mutation p.A336D 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-BT-A0YX-01 20 13251215 13251215 C A ISM1 Missense_Mutation p.P68Q 0.22 tolerated(0.54) benign(0.001) TCGA-BT-A0YX-01 20 13850838 13850838 G C SEL1L2 Missense_Mutation p.I372M 0.22 deleterious(0.01) probably_damaging(0.918) TCGA-BT-A0YX-01 20 22563340 22563340 C G FOXA2 Missense_Mutation p.Q180H 0.26 deleterious(0) possibly_damaging(0.906) TCGA-BT-A0YX-01 20 25295601 25295601 C G ABHD12 Silent p.L193L 0.19 TCGA-BT-A0YX-01 20 30193153 30193153 C T ID1 5'UTR 0.25 TCGA-BT-A0YX-01 20 31760844 31760844 C T BPIFA2 Silent p.V88V 0.29 TCGA-BT-A0YX-01 20 31813019 31813019 G C BPIFA3 Missense_Mutation p.E168Q 0.23 tolerated(0.06) possibly_damaging(0.863) TCGA-BT-A0YX-01 20 34021568 34021568 C T GDF5 3'UTR 0.23 TCGA-BT-A0YX-01 20 34220101 34220101 C G CPNE1 Missense_Mutation p.R152T 0.25 tolerated(0.05) possibly_damaging(0.507) TCGA-BT-A0YX-01 20 36488327 36488327 C T CTNNBL1 Silent p.I473I 0.13 TCGA-BT-A0YX-01 20 36948673 36948673 G A BPI Missense_Mutation p.M255I 0.12 deleterious(0.02) benign(0.035) TCGA-BT-A0YX-01 20 39708734 39708734 A T TOP1 Missense_Mutation p.Q115H 0.18 tolerated(0.3) benign(0) TCGA-BT-A0YX-01 20 43850714 43850714 G A SEMG2 Silent p.G147G 0.23 TCGA-BT-A0YX-01 20 43850728 43850728 G A SEMG2 Missense_Mutation p.G152E 0.22 tolerated(0.11) probably_damaging(0.999) TCGA-BT-A0YX-01 20 44577600 44577600 C T ZNF335 Missense_Mutation p.D1341N 0.26 tolerated(0.18) possibly_damaging(0.764) TCGA-BT-A0YX-01 20 48130897 48130897 G C PTGIS Silent p.L297L 0.19 TCGA-BT-A0YX-01 20 48497480 48497480 G C SLC9A8 Missense_Mutation p.R409T 0.20 deleterious(0) probably_damaging(0.996) TCGA-BT-A0YX-01 20 50408216 50408216 G C SALL4 Missense_Mutation p.S269C 0.26 deleterious(0) probably_damaging(0.998) TCGA-BT-A0YX-01 20 50768648 50768648 C G ZFP64 3'UTR 0.18 TCGA-BT-A0YX-01 20 58520007 58520007 G C FAM217B Missense_Mutation p.D337H 0.22 tolerated(0.08) benign(0.069) TCGA-BT-A0YX-01 20 60921260 60921260 C T LAMA5 Missense_Mutation p.E432K 0.35 possibly_damaging(0.681) TCGA-BT-A0YX-01 20 61959482 61959482 G C COL20A1 Intron 0.23 TCGA-BT-A0YX-01 20 62577259 62577259 C T UCKL1 Missense_Mutation p.D161N 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 21 10973742 10973742 C G TPTE 5'UTR 0.10 TCGA-BT-A0YX-01 21 15561577 15561577 G A LIPI Silent p.F91F 0.26 TCGA-BT-A0YX-01 21 22910264 22910264 G C NCAM2 Missense_Mutation p.D834H 0.12 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 21 31744044 31744044 C G KRTAP13-2 Missense_Mutation p.R163T 0.22 deleterious(0.04) possibly_damaging(0.706) TCGA-BT-A0YX-01 21 40883722 40883722 C T SH3BGR 3'UTR 0.24 TCGA-BT-A0YX-01 21 45514011 45514011 C G TRAPPC10 Missense_Mutation p.S1022C 0.18 tolerated(0.21) benign(0.014) TCGA-BT-A0YX-01 21 45514050 45514050 C G TRAPPC10 Missense_Mutation p.S1035C 0.18 deleterious(0.02) possibly_damaging(0.852) TCGA-BT-A0YX-01 21 45518306 45518306 C G TRAPPC10 Silent p.L1079L 0.22 TCGA-BT-A0YX-01 21 45706995 45706995 C G AIRE Missense_Mutation p.P148A 0.18 deleterious(0.04) possibly_damaging(0.624) TCGA-BT-A0YX-01 22 18566266 18566266 C T PEX26 Silent p.L145L 0.20 TCGA-BT-A0YX-01 22 24086954 24086954 G C ZNF70 Nonsense_Mutation p.S125* 0.22 TCGA-BT-A0YX-01 22 24615767 24615767 G A GGT5 3'UTR 0.30 TCGA-BT-A0YX-01 22 27003913 27003913 C A CRYBB1 Missense_Mutation p.W124C 0.28 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 22 27003914 27003914 C T CRYBB1 Nonsense_Mutation p.W124* 0.27 TCGA-BT-A0YX-01 22 29752417 29752417 C T AP1B1 Silent p.Q238Q 0.31 TCGA-BT-A0YX-01 22 30188508 30188508 G A ASCC2 Nonsense_Mutation p.Q646* 0.08 TCGA-BT-A0YX-01 22 37770273 37770273 G A ELFN2 Silent p.V434V 0.24 TCGA-BT-A0YX-01 22 38273809 38273809 G C EIF3L Missense_Mutation p.Q402H 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 22 40815081 40815081 G C MKL1 Missense_Mutation p.S454C 0.18 deleterious(0) probably_damaging(0.987) TCGA-BT-A0YX-01 22 41626166 41626166 G C L3MBTL2 Missense_Mutation p.E677Q 0.20 deleterious_low_confidence(0.01) benign(0.007) TCGA-BT-A0YX-01 22 45818177 45818177 C T RIBC2 Silent p.L183L 0.23 TCGA-BT-A0YX-01 22 46693369 46693369 G A GTSE1 Silent p.K24K 0.22 TCGA-BT-A0YX-01 22 50563987 50563987 C T MOV10L1 Missense_Mutation p.S579F 0.23 tolerated(0.29) benign(0.087) TCGA-BT-A0YX-01 22 50721499 50721499 G A PLXNB2 Silent p.L932L 0.35 TCGA-BT-A0YX-01 22 51020725 51020725 C T CHKB Missense_Mutation p.E96K 0.25 deleterious(0.04) benign(0.001) TCGA-BT-A0YX-01 2 100011209 100011209 G C EIF5B Silent p.V1039V 0.17 TCGA-BT-A0YX-01 2 102956721 102956721 G C IL1RL1 Missense_Mutation p.E146Q 0.16 tolerated(1) benign(0.129) TCGA-BT-A0YX-01 2 103119999 103119999 C T SLC9A4 Silent p.I271I 0.25 TCGA-BT-A0YX-01 2 113785616 113785616 G C IL36B Intron 0.07 TCGA-BT-A0YX-01 2 127453717 127453717 G A GYPC Silent p.%3D 0.23 TCGA-BT-A0YX-01 2 128408370 128408370 G C GPR17 Missense_Mutation p.E49Q 0.18 tolerated(0.17) benign(0.011) TCGA-BT-A0YX-01 2 157186256 157186256 G C NR4A2 Missense_Mutation p.S148C 0.24 tolerated(0.09) possibly_damaging(0.847) TCGA-BT-A0YX-01 2 158115547 158115547 C T GALNT5 Missense_Mutation p.S318F 0.23 deleterious(0) possibly_damaging(0.906) TCGA-BT-A0YX-01 2 162833271 162833271 G C SLC4A10 Missense_Mutation p.D1077H 0.18 tolerated(0.11) benign(0.332) TCGA-BT-A0YX-01 2 165956815 165956815 C T SCN3A Missense_Mutation p.M1321I 0.22 deleterious(0.02) possibly_damaging(0.729) TCGA-BT-A0YX-01 2 167160597 167160597 G A SCN9A Intron 0.25 TCGA-BT-A0YX-01 2 167992460 167992460 G C XIRP2 Missense_Mutation p.K150N 0.24 possibly_damaging(0.787) TCGA-BT-A0YX-01 2 170083085 170083085 G A LRP2 Silent p.F1747F 0.19 TCGA-BT-A0YX-01 2 170367164 170367164 G A KLHL41 Silent p.L292L 0.25 TCGA-BT-A0YX-01 2 172965328 172965328 G C DLX2 Missense_Mutation p.H310Q 0.12 deleterious_low_confidence(0.05) benign(0.227) TCGA-BT-A0YX-01 2 178098975 178098975 A G NFE2L2 Missense_Mutation p.W24R 0.11 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 2 179472934 179472934 G A TTN Missense_Mutation p.S17559L 0.29 TCGA-BT-A0YX-01 2 179583286 179583286 C G TTN Missense_Mutation p.E8183Q 0.15 TCGA-BT-A0YX-01 2 179598113 179598113 C T TTN Missense_Mutation p.A5303T 0.24 TCGA-BT-A0YX-01 2 182543515 182543515 C G NEUROD1 Missense_Mutation p.E25Q 0.26 deleterious(0.04) benign(0.071) TCGA-BT-A0YX-01 2 183095762 183095762 C T PDE1A Missense_Mutation p.D188N 0.24 tolerated(0.25) probably_damaging(0.944) TCGA-BT-A0YX-01 2 187626715 187626715 C T FAM171B Missense_Mutation p.S549F 0.20 tolerated(0.2) possibly_damaging(0.562) TCGA-BT-A0YX-01 2 187626819 187626819 C G FAM171B Missense_Mutation p.Q584E 0.19 deleterious(0) probably_damaging(0.996) TCGA-BT-A0YX-01 2 1914091 1914091 C G MYT1L Missense_Mutation p.E578Q 0.07 deleterious(0) probably_damaging(0.994) TCGA-BT-A0YX-01 2 204291976 204291976 C G ABI2 Missense_Mutation p.I443M 0.21 deleterious(0) probably_damaging(0.99) TCGA-BT-A0YX-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-BT-A0YX-01 2 210557605 210557605 G A MAP2 Missense_Mutation p.M237I 0.18 tolerated_low_confidence(0.78) benign(0.001) TCGA-BT-A0YX-01 2 216279496 216279496 G C FN1 Intron 0.24 TCGA-BT-A0YX-01 2 218712319 218712319 G A TNS1 Missense_Mutation p.S849L 0.28 tolerated(0.37) benign(0) TCGA-BT-A0YX-01 2 223389719 223389719 C T SGPP2 Silent p.L205L 0.18 TCGA-BT-A0YX-01 2 227662879 227662879 G A IRS1 Silent p.I192I 0.21 TCGA-BT-A0YX-01 2 227663125 227663125 G C IRS1 Silent p.L110L 0.16 TCGA-BT-A0YX-01 2 227886844 227886844 G T COL4A4 Missense_Mutation p.P1379Q 0.20 unknown(0) TCGA-BT-A0YX-01 2 228163449 228163449 G C COL4A3 Missense_Mutation p.G1268A 0.22 unknown(0) TCGA-BT-A0YX-01 2 230656622 230656622 G A TRIP12 Silent p.L1384L 0.22 TCGA-BT-A0YX-01 2 232141419 232141419 G A ARMC9 Missense_Mutation p.D469N 0.22 deleterious(0.03) possibly_damaging(0.785) TCGA-BT-A0YX-01 2 232141443 232141443 G A ARMC9 Missense_Mutation p.E477K 0.21 deleterious(0) probably_damaging(0.943) TCGA-BT-A0YX-01 2 240061422 240061422 C T HDAC4 Silent p.A312A 0.25 TCGA-BT-A0YX-01 2 242039257 242039257 T C MTERFD2 Missense_Mutation p.Q25R 0.30 tolerated(0.49) benign(0.007) TCGA-BT-A0YX-01 2 242707248 242707248 G C D2HGDH Missense_Mutation p.G477A 0.24 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 2 24300523 24300523 C T TP53I3 Missense_Mutation p.E309K 0.38 tolerated(0.17) benign(0.003) TCGA-BT-A0YX-01 2 25042689 25042689 C G CENPO 3'UTR 0.30 TCGA-BT-A0YX-01 2 25457063 25457063 C T DNMT3A 3'UTR 0.29 TCGA-BT-A0YX-01 2 25976464 25976464 C G ASXL2 Missense_Mutation p.E361Q 0.19 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 2 27801442 27801442 C T C2orf16 Missense_Mutation p.S668F 0.40 tolerated(0.29) benign(0.3) TCGA-BT-A0YX-01 2 28616622 28616622 C G FOSL2 Missense_Mutation p.S12W 0.37 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 2 31805994 31805994 C T SRD5A2 RNA 0.15 TCGA-BT-A0YX-01 2 37319356 37319356 C G GPATCH11 Silent p.L162L 0.21 TCGA-BT-A0YX-01 2 39213087 39213087 G C SOS1 Missense_Mutation p.P1294A 0.31 deleterious_low_confidence(0.03) probably_damaging(0.956) TCGA-BT-A0YX-01 2 48573348 48573348 G C FOXN2 5'UTR 0.11 TCGA-BT-A0YX-01 2 54146384 54146384 C G PSME4 Splice_Site p.X807_splice 0.16 TCGA-BT-A0YX-01 2 73677000 73677000 C G ALMS1 Missense_Mutation p.L1115V 0.25 possibly_damaging(0.55) TCGA-BT-A0YX-01 2 74689052 74689052 C T MOGS Missense_Mutation p.E622K 0.18 tolerated(0.19) benign(0.002) TCGA-BT-A0YX-01 2 74699205 74699205 T G MRPL53 3'UTR 0.20 TCGA-BT-A0YX-01 2 74699247 74699247 C A MRPL53 Nonstop_Mutation p.*113Lext*14 0.23 TCGA-BT-A0YX-01 2 75061718 75061718 C G HK2 Missense_Mutation p.S4W 0.23 tolerated_low_confidence(0.1) benign(0.435) TCGA-BT-A0YX-01 2 90044319 90044319 C G IGKV2D-24 Missense_Mutation p.F80L 0.21 tolerated(0.65) benign(0.002) TCGA-BT-A0YX-01 2 95941808 95941808 C A PROM2 Missense_Mutation p.T142K 0.17 tolerated(0.45) possibly_damaging(0.841) TCGA-BT-A0YX-01 2 96587533 96587533 C T ANKRD36C Silent p.L723L 0.19 TCGA-BT-A0YX-01 2 96952861 96952861 G A SNRNP200 Silent p.I1174I 0.26 TCGA-BT-A0YX-01 2 97494773 97494773 G A CNNM3 Missense_Mutation p.R654Q 0.35 tolerated(0.08) benign(0.088) TCGA-BT-A0YX-01 3 10089620 10089620 C T FANCD2 Missense_Mutation p.S433L 0.15 tolerated(0.05) benign(0.008) TCGA-BT-A0YX-01 3 10091133 10091133 C G FANCD2 Missense_Mutation p.L497V 0.21 tolerated(0.28) benign(0.149) TCGA-BT-A0YX-01 3 101390113 101390113 G A ZBTB11 Silent p.F213F 0.14 TCGA-BT-A0YX-01 3 105438984 105438984 G A CBLB Silent p.I438I 0.15 TCGA-BT-A0YX-01 3 112534713 112534713 T G CD200R1L 3'UTR 0.10 TCGA-BT-A0YX-01 3 119101938 119101938 G C ARHGAP31 Missense_Mutation p.E183Q 0.12 deleterious(0.01) possibly_damaging(0.608) TCGA-BT-A0YX-01 3 121248489 121248489 C G POLQ Intron 0.09 TCGA-BT-A0YX-01 3 121400701 121400701 C G GOLGB1 Missense_Mutation p.L2902F 0.11 probably_damaging(0.996) TCGA-BT-A0YX-01 3 121417101 121417101 G T GOLGB1 Missense_Mutation p.Q757K 0.15 possibly_damaging(0.702) TCGA-BT-A0YX-01 3 122215299 122215299 C G KPNA1 Missense_Mutation p.Q38H 0.12 deleterious(0.02) probably_damaging(1) TCGA-BT-A0YX-01 3 122255822 122255822 G C PARP9 Missense_Mutation p.Q657E 0.15 deleterious(0.05) benign(0.206) TCGA-BT-A0YX-01 3 122447406 122447406 C G PARP14 Missense_Mutation p.Q1790E 0.14 deleterious(0.02) probably_damaging(0.975) TCGA-BT-A0YX-01 3 122865043 122865043 A T PDIA5 Missense_Mutation p.N360I 0.11 deleterious(0.02) benign(0.281) TCGA-BT-A0YX-01 3 123051504 123051504 G C ADCY5 Missense_Mutation p.I475M 0.07 deleterious(0.01) probably_damaging(0.984) TCGA-BT-A0YX-01 3 123987680 123987680 G C KALRN Missense_Mutation p.E181Q 0.42 tolerated(0.26) possibly_damaging(0.865) TCGA-BT-A0YX-01 3 123987800 123987800 G A KALRN Missense_Mutation p.E221K 0.45 tolerated(0.19) possibly_damaging(0.856) TCGA-BT-A0YX-01 3 129020945 129020945 C G HMCES Missense_Mutation p.T263S 0.14 tolerated(0.96) benign(0.003) TCGA-BT-A0YX-01 3 129023458 129023458 G C HMCES Missense_Mutation p.Q285H 0.18 deleterious(0.04) benign(0.013) TCGA-BT-A0YX-01 3 129023525 129023525 G C HMCES Missense_Mutation p.E308Q 0.19 deleterious(0.04) benign(0.081) TCGA-BT-A0YX-01 3 129023626 129023626 G A HMCES Silent p.E341E 0.08 TCGA-BT-A0YX-01 3 129282030 129282030 G A PLXND1 Silent p.I1525I 0.21 TCGA-BT-A0YX-01 3 130290018 130290018 G A COL6A6 Missense_Mutation p.D920N 0.18 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 3 130464024 130464024 G C PIK3R4 Missense_Mutation p.I13M 0.14 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 3 133185754 133185754 C T BFSP2 Missense_Mutation p.S325L 0.13 deleterious(0.04) possibly_damaging(0.523) TCGA-BT-A0YX-01 3 13393439 13393439 G C NUP210 Silent p.L925L 0.21 TCGA-BT-A0YX-01 3 138033219 138033219 C T NME9 Missense_Mutation p.E78K 0.12 tolerated(0.65) benign(0.012) TCGA-BT-A0YX-01 3 138374293 138374293 C T PIK3CB Missense_Mutation p.E1051K 0.34 deleterious(0.03) possibly_damaging(0.883) TCGA-BT-A0YX-01 3 138374305 138374305 C T PIK3CB Missense_Mutation p.E1047K 0.34 deleterious(0) benign(0.263) TCGA-BT-A0YX-01 3 138374308 138374308 C T PIK3CB Missense_Mutation p.D1046N 0.33 tolerated(0.82) benign(0.01) TCGA-BT-A0YX-01 3 138433362 138433362 G A PIK3CB Missense_Mutation p.T417M 0.49 deleterious(0.03) probably_damaging(0.967) TCGA-BT-A0YX-01 3 140185546 140185546 C T CLSTN2 Silent p.P439P 0.12 TCGA-BT-A0YX-01 3 140401335 140401335 G C TRIM42 Missense_Mutation p.D125H 0.11 tolerated(0.1) possibly_damaging(0.697) TCGA-BT-A0YX-01 3 149459490 149459490 G A COMMD2 Missense_Mutation p.L140F 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-BT-A0YX-01 3 155199659 155199659 G C PLCH1 Missense_Mutation p.Q1394E 0.15 tolerated_low_confidence(0.08) benign(0.003) TCGA-BT-A0YX-01 3 160156857 160156857 G A TRIM59 Nonsense_Mutation p.Q39* 0.12 TCGA-BT-A0YX-01 3 167414911 167414911 C G PDCD10 Missense_Mutation p.E52Q 0.16 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 3 167759263 167759263 C G GOLIM4 Splice_Site p.X173_splice 0.13 TCGA-BT-A0YX-01 3 168807914 168807914 T A MECOM Missense_Mutation p.E969V 0.41 deleterious(0.02) possibly_damaging(0.812) TCGA-BT-A0YX-01 3 168807915 168807915 C T MECOM Missense_Mutation p.E969K 0.42 tolerated(0.09) possibly_damaging(0.492) TCGA-BT-A0YX-01 3 17300041 17300041 C G TBC1D5 Missense_Mutation p.D430H 0.23 deleterious(0) possibly_damaging(0.671) TCGA-BT-A0YX-01 3 183967044 183967044 C G ALG3 5'Flank 0.19 TCGA-BT-A0YX-01 3 184009972 184009972 C T ECE2 Silent p.F866F 0.15 TCGA-BT-A0YX-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.45 deleterious_low_confidence(0.02) benign(0.001) TCGA-BT-A0YX-01 3 185270277 185270277 C T LIPH 5'UTR 0.16 TCGA-BT-A0YX-01 3 186299204 186299204 G A DNAJB11 Silent p.R167R 0.12 TCGA-BT-A0YX-01 3 186510677 186510677 G A RFC4 Missense_Mutation p.S157L 0.12 tolerated(0.23) benign(0.222) TCGA-BT-A0YX-01 3 186512523 186512523 C T RFC4 Missense_Mutation p.D112N 0.13 deleterious(0) probably_damaging(0.989) TCGA-BT-A0YX-01 3 188925327 188925327 C G TPRG1 Missense_Mutation p.L52V 0.21 deleterious(0.01) benign(0.313) TCGA-BT-A0YX-01 3 193353228 193353228 G A OPA1 Missense_Mutation p.E271K 0.12 deleterious(0) possibly_damaging(0.829) TCGA-BT-A0YX-01 3 193364936 193364936 G C OPA1 Missense_Mutation p.E595Q 0.05 deleterious(0.02) possibly_damaging(0.77) TCGA-BT-A0YX-01 3 195713409 195713409 G T SDHAP1 RNA 0.14 TCGA-BT-A0YX-01 3 196778504 196778504 C T DLG1 Missense_Mutation p.R873K 0.09 tolerated(0.57) benign(0.063) TCGA-BT-A0YX-01 3 20082225 20082225 C G KAT2B Missense_Mutation p.P86A 0.12 deleterious(0.02) benign(0.327) TCGA-BT-A0YX-01 3 28381983 28381983 G A AZI2 Silent p.V42V 0.23 TCGA-BT-A0YX-01 3 33450953 33450953 G C UBP1 Missense_Mutation p.I232M 0.23 deleterious(0) probably_damaging(0.983) TCGA-BT-A0YX-01 3 33458292 33458292 C G UBP1 Silent p.R100R 0.25 TCGA-BT-A0YX-01 3 38921615 38921615 C G SCN11A Splice_Site p.X1074_splice 0.20 TCGA-BT-A0YX-01 3 39307706 39307706 T A CX3CR1 Missense_Mutation p.N131Y 0.27 deleterious(0) possibly_damaging(0.861) TCGA-BT-A0YX-01 3 40557421 40557421 C G ZNF620 Missense_Mutation p.F112L 0.23 tolerated(0.16) benign(0.001) TCGA-BT-A0YX-01 3 42672757 42672757 G C NKTR Missense_Mutation p.D167H 0.24 deleterious_low_confidence(0) unknown(0) TCGA-BT-A0YX-01 3 42730464 42730464 G A KLHL40 Missense_Mutation p.D509N 0.26 tolerated(0.69) benign(0.009) TCGA-BT-A0YX-01 3 44893313 44893313 G C KIF15 Missense_Mutation p.E1281Q 0.21 tolerated(0.16) possibly_damaging(0.611) TCGA-BT-A0YX-01 3 48423544 48423544 G T FBXW12 Nonsense_Mutation p.E422* 0.19 TCGA-BT-A0YX-01 3 48621376 48621376 C T COL7A1 Missense_Mutation p.G1412E 0.13 unknown(0) TCGA-BT-A0YX-01 3 48641043 48641043 G A UQCRC1 Silent p.L220L 0.14 TCGA-BT-A0YX-01 3 48684260 48684260 G A CELSR3 Missense_Mutation p.L2411F 0.27 deleterious(0.05) probably_damaging(0.965) TCGA-BT-A0YX-01 3 49690134 49690134 G C BSN Missense_Mutation p.E1049Q 0.21 unknown(0) TCGA-BT-A0YX-01 3 49899235 49899235 G C CAMKV Missense_Mutation p.I97M 0.18 deleterious(0.04) probably_damaging(0.962) TCGA-BT-A0YX-01 3 50390669 50390669 C T CYB561D2 Intron 0.25 TCGA-BT-A0YX-01 3 50391174 50391174 G C CYB561D2 Nonstop_Mutation p.*223Sext*15 0.18 TCGA-BT-A0YX-01 3 50391323 50391323 C G CYB561D2 3'UTR 0.23 TCGA-BT-A0YX-01 3 53157763 53157763 C T RFT1 Silent p.Q81Q 0.20 TCGA-BT-A0YX-01 3 53326414 53326414 C T DCP1A Silent p.L356L 0.28 TCGA-BT-A0YX-01 3 56647736 56647736 G A CCDC66 Silent p.Q508Q 0.22 TCGA-BT-A0YX-01 3 58414123 58414123 C G PDHB Intron 0.09 TCGA-BT-A0YX-01 3 81586104 81586104 C T GBE1 Missense_Mutation p.M587I 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-BT-A0YX-01 3 8922890 8922890 C G RAD18 3'UTR 0.27 TCGA-BT-A0YX-01 3 98241652 98241652 G A CLDND1 Intron 0.14 TCGA-BT-A0YX-01 3 99865849 99865849 G A CMSS1 Missense_Mutation p.E33K 0.18 tolerated(0.51) benign(0.002) TCGA-BT-A0YX-01 4 110442741 110442741 C T SEC24B Silent p.L823L 0.27 TCGA-BT-A0YX-01 4 119163257 119163257 G C NDST3 Missense_Mutation p.Q784H 0.22 deleterious(0) probably_damaging(0.997) TCGA-BT-A0YX-01 4 126241888 126241888 C T FAT4 Missense_Mutation p.S1441L 0.20 benign(0.378) TCGA-BT-A0YX-01 4 126371358 126371358 G C FAT4 Missense_Mutation p.D3063H 0.28 probably_damaging(1) TCGA-BT-A0YX-01 4 126371891 126371891 C G FAT4 Silent p.L3240L 0.15 TCGA-BT-A0YX-01 4 144107121 144107121 G A USP38 Missense_Mutation p.R173Q 0.21 tolerated(0.12) possibly_damaging(0.791) TCGA-BT-A0YX-01 4 152204409 152204409 G T PRSS48 Missense_Mutation p.D208Y 0.21 tolerated(0.12) probably_damaging(0.973) TCGA-BT-A0YX-01 4 153249367 153249367 C - FBXW7 Frame_Shift_Del p.E471Kfs*27 0.20 TCGA-BT-A0YX-01 4 153249501 153249501 G A FBXW7 Missense_Mutation p.S426L 0.22 deleterious(0) probably_damaging(0.951) TCGA-BT-A0YX-01 4 15529226 15529226 G A CC2D2A Missense_Mutation p.D436N 0.15 deleterious(0.04) benign(0.046) TCGA-BT-A0YX-01 4 160260433 160260433 G T RAPGEF2 Nonsense_Mutation p.E660* 0.20 TCGA-BT-A0YX-01 4 166220763 166220763 G T KLHL2 Missense_Mutation p.M296I 0.27 tolerated(1) benign(0.001) TCGA-BT-A0YX-01 4 169215078 169215078 G C DDX60 Missense_Mutation p.L248V 0.19 deleterious(0.03) possibly_damaging(0.756) TCGA-BT-A0YX-01 4 177052884 177052884 G C WDR17 Missense_Mutation p.D389H 0.06 tolerated(0.11) possibly_damaging(0.89) TCGA-BT-A0YX-01 4 183836719 183836719 C G DCTD Missense_Mutation p.M12I 0.20 tolerated(0.44) benign(0.004) TCGA-BT-A0YX-01 4 184233512 184233512 G C WWC2 Missense_Mutation p.E1135Q 0.19 deleterious(0.02) possibly_damaging(0.588) TCGA-BT-A0YX-01 4 186188198 186188198 G A SNX25 Missense_Mutation p.R163K 0.27 tolerated(0.22) probably_damaging(0.919) TCGA-BT-A0YX-01 4 2233842 2233842 G C HAUS3 Missense_Mutation p.L542V 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A0YX-01 4 30723906 30723906 C T PCDH7 Missense_Mutation p.R288C 0.38 deleterious(0) probably_damaging(0.921) TCGA-BT-A0YX-01 4 3208288 3208288 C T HTT Silent p.I1928I 0.18 TCGA-BT-A0YX-01 4 46060556 46060556 G C GABRG1 Missense_Mutation p.Q237E 0.17 deleterious(0.03) benign(0.32) TCGA-BT-A0YX-01 4 46967025 46967025 G C GABRA4 Missense_Mutation p.P366A 0.20 tolerated(0.2) benign(0.363) TCGA-BT-A0YX-01 4 48901920 48901920 G C OCIAD2 Nonsense_Mutation p.S30* 0.08 TCGA-BT-A0YX-01 4 6606942 6606942 G A MAN2B2 Missense_Mutation p.R567H 0.27 tolerated(0.08) probably_damaging(0.977) TCGA-BT-A0YX-01 4 68935699 68935699 G C TMPRSS11F Missense_Mutation p.L181V 0.16 deleterious(0.04) benign(0.345) TCGA-BT-A0YX-01 4 70822044 70822044 G A CSN2 3'UTR 0.19 TCGA-BT-A0YX-01 4 74607297 74607297 C G IL8 Missense_Mutation p.Q35E 0.22 deleterious(0.01) possibly_damaging(0.673) TCGA-BT-A0YX-01 4 74863775 74863775 G C CXCL5 Missense_Mutation p.P94A 0.18 deleterious(0.02) probably_damaging(0.936) TCGA-BT-A0YX-01 4 84230599 84230599 C T HPSE Missense_Mutation p.D314N 0.17 tolerated(0.19) benign(0.049) TCGA-BT-A0YX-01 4 84231203 84231203 C G HPSE Missense_Mutation p.D291H 0.15 deleterious(0) probably_damaging(0.997) TCGA-BT-A0YX-01 4 95223298 95223298 G A HPGDS Missense_Mutation p.S145F 0.29 deleterious(0.03) benign(0.078) TCGA-BT-A0YX-01 5 101593786 101593786 C G SLCO4C1 Missense_Mutation p.L378F 0.27 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 5 102891757 102891757 C T NUDT12 Missense_Mutation p.R280Q 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-BT-A0YX-01 5 10403539 10403539 G C MARCH6 Silent p.L406L 0.26 TCGA-BT-A0YX-01 5 1064231 1064231 G C SLC12A7 Silent p.L858L 0.20 TCGA-BT-A0YX-01 5 108281850 108281850 C G FER Missense_Mutation p.S419C 0.23 tolerated(0.1) probably_damaging(0.979) TCGA-BT-A0YX-01 5 110818485 110818485 C T CAMK4 Silent p.V277V 0.13 TCGA-BT-A0YX-01 5 112769841 112769841 G A TSSK1B Silent p.R232R 0.19 TCGA-BT-A0YX-01 5 113831654 113831654 G C KCNN2 Missense_Mutation p.K505N 0.18 tolerated(0.11) probably_damaging(0.966) TCGA-BT-A0YX-01 5 1221314 1221314 C T SLC6A19 Silent p.F529F 0.23 TCGA-BT-A0YX-01 5 122881333 122881333 C G CSNK1G3 5'UTR 0.39 TCGA-BT-A0YX-01 5 131411636 131411636 G A CSF2 3'UTR 0.26 TCGA-BT-A0YX-01 5 132086692 132086692 G C CCNI2 Intron 0.12 TCGA-BT-A0YX-01 5 132160910 132160910 G A SHROOM1 Missense_Mutation p.S308L 0.25 deleterious(0) possibly_damaging(0.783) TCGA-BT-A0YX-01 5 139905956 139905956 C G ANKHD1 Missense_Mutation p.S1623C 0.23 probably_damaging(0.921) TCGA-BT-A0YX-01 5 139905979 139905979 C G ANKHD1 Missense_Mutation p.H1631D 0.26 benign(0.081) TCGA-BT-A0YX-01 5 140214299 140214299 G A PCDHA7 Missense_Mutation p.E111K 0.09 deleterious_low_confidence(0) benign(0.167) TCGA-BT-A0YX-01 5 140553716 140553716 G A PCDHB7 Missense_Mutation p.E434K 0.26 deleterious_low_confidence(0.02) benign(0.012) TCGA-BT-A0YX-01 5 140605331 140605331 G A PCDHB14 Missense_Mutation p.E752K 0.20 deleterious_low_confidence(0.02) benign(0.217) TCGA-BT-A0YX-01 5 140763130 140763130 C T PCDHGA7 Nonsense_Mutation p.R222* 0.22 TCGA-BT-A0YX-01 5 140783493 140783493 G A PCDHGA9 Missense_Mutation p.G325E 0.24 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-BT-A0YX-01 5 140870089 140870089 G A PCDHGC5 Missense_Mutation p.D428N 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 5 141974804 141974804 G A FGF1 3'UTR 0.24 TCGA-BT-A0YX-01 5 151231107 151231107 C G GLRA1 Silent p.L252L 0.17 TCGA-BT-A0YX-01 5 154330479 154330479 G C MRPL22 Missense_Mutation p.G59A 0.27 deleterious(0.03) possibly_damaging(0.766) TCGA-BT-A0YX-01 5 156770349 156770349 G C FNDC9 Missense_Mutation p.L66V 0.20 deleterious(0) probably_damaging(0.996) TCGA-BT-A0YX-01 5 159822236 159822236 C T C5orf54 Missense_Mutation p.E88K 0.26 tolerated(0.24) benign(0.443) TCGA-BT-A0YX-01 5 16177875 16177875 C T MARCH11 Missense_Mutation p.R218K 0.19 tolerated(0.67) benign(0.023) TCGA-BT-A0YX-01 5 167553912 167553912 G A TENM2 Missense_Mutation p.R788Q 0.27 tolerated(0.42) benign(0.03) TCGA-BT-A0YX-01 5 172386933 172386933 C T RPL26L1 Silent p.F19F 0.19 TCGA-BT-A0YX-01 5 178506267 178506267 G T ZNF354C Missense_Mutation p.E278D 0.27 tolerated(0.06) benign(0.428) TCGA-BT-A0YX-01 5 40692015 40692015 G C PTGER4 Missense_Mutation p.K334N 0.27 deleterious(0) probably_damaging(0.979) TCGA-BT-A0YX-01 5 56545357 56545357 G C GPBP1 Missense_Mutation p.R316T 0.25 deleterious(0) benign(0.371) TCGA-BT-A0YX-01 5 60448785 60448785 G A NDUFAF2 3'UTR 0.11 TCGA-BT-A0YX-01 5 637659 637659 C G CEP72 Missense_Mutation p.S311C 0.20 deleterious(0.03) possibly_damaging(0.885) TCGA-BT-A0YX-01 5 68412387 68412387 G A SLC30A5 Silent p.E413E 0.12 TCGA-BT-A0YX-01 5 68616292 68616292 C A CCDC125 Missense_Mutation p.G26C 0.13 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 5 71491837 71491837 C T MAP1B Silent p.T885T 0.21 TCGA-BT-A0YX-01 5 7816985 7816985 G A ADCY2 Missense_Mutation p.E964K 0.19 deleterious(0.03) benign(0.025) TCGA-BT-A0YX-01 5 78373343 78373343 G C BHMT2 Missense_Mutation p.G25A 0.19 tolerated(0.22) probably_damaging(0.975) TCGA-BT-A0YX-01 5 79027767 79027767 C T CMYA5 Missense_Mutation p.S1060L 0.22 probably_damaging(0.95) TCGA-BT-A0YX-01 5 90449160 90449160 G A GPR98 Silent p.L6249L 0.15 TCGA-BT-A0YX-01 5 93120086 93120086 C A FAM172A Intron 0.18 TCGA-BT-A0YX-01 5 98207807 98207807 T C CHD1 Missense_Mutation p.Y1270C 0.18 deleterious(0.02) probably_damaging(0.912) TCGA-BT-A0YX-01 6 116264315 116264315 C T FRK Missense_Mutation p.E392K 0.26 deleterious(0) benign(0.311) TCGA-BT-A0YX-01 6 117718277 117718277 G A ROS1 Missense_Mutation p.P194S 0.18 deleterious(0) probably_damaging(0.969) TCGA-BT-A0YX-01 6 123127407 123127407 C G SMPDL3A Missense_Mutation p.P317A 0.17 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 6 126320719 126320719 G A TRMT11 Silent p.V213V 0.23 TCGA-BT-A0YX-01 6 134210742 134210742 G A TCF21 Silent p.L69L 0.07 TCGA-BT-A0YX-01 6 1394928 1394928 C G FOXF2 Intron 0.16 TCGA-BT-A0YX-01 6 152461256 152461256 C G SYNE1 Missense_Mutation p.L8429F 0.21 possibly_damaging(0.482) TCGA-BT-A0YX-01 6 158834155 158834155 G A TULP4 Missense_Mutation p.G104E 0.29 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 6 166571975 166571975 G C T Missense_Mutation p.S379C 0.22 tolerated(0.05) benign(0.005) TCGA-BT-A0YX-01 6 168344641 168344641 G C MLLT4 Missense_Mutation p.R1080T 0.27 deleterious(0) probably_damaging(0.998) TCGA-BT-A0YX-01 6 29641179 29641179 C T ZFP57 Missense_Mutation p.D237N 0.22 tolerated(0.09) possibly_damaging(0.861) TCGA-BT-A0YX-01 6 30043478 30043478 G A RNF39 Missense_Mutation p.A30V 0.26 deleterious_low_confidence(0.02) benign(0.073) TCGA-BT-A0YX-01 6 30711642 30711642 C G IER3 3'UTR 0.26 TCGA-BT-A0YX-01 6 30954371 30954371 C G MUC21 Missense_Mutation p.S140C 0.18 deleterious(0.01) unknown(0) TCGA-BT-A0YX-01 6 31609349 31609349 G A BAG6 Silent p.I812I 0.34 TCGA-BT-A0YX-01 6 31710892 31710892 G A MSH5 Silent p.Q120Q 0.43 TCGA-BT-A0YX-01 6 31913003 31913003 G A C2 Missense_Mutation p.D710N 0.23 tolerated(0.66) benign(0.001) TCGA-BT-A0YX-01 6 33660624 33660624 G A ITPR3 Silent p.E2526E 0.38 TCGA-BT-A0YX-01 6 33661456 33661456 G C ITPR3 Missense_Mutation p.E2587Q 0.42 deleterious(0) probably_damaging(0.993) TCGA-BT-A0YX-01 6 33663418 33663418 C G SBP1 Missense_Mutation p.K19N 0.59 unknown(0) TCGA-BT-A0YX-01 6 36298201 36298201 C G C6orf222 Missense_Mutation p.Q89H 0.22 tolerated(0.07) possibly_damaging(0.891) TCGA-BT-A0YX-01 6 36930731 36930731 G A PI16 Missense_Mutation p.D205N 0.31 deleterious(0.01) benign(0.093) TCGA-BT-A0YX-01 6 37620068 37620068 C T MDGA1 Missense_Mutation p.S344N 0.30 deleterious(0.02) probably_damaging(0.953) TCGA-BT-A0YX-01 6 38834581 38834581 C G DNAH8 Missense_Mutation p.L1991V 0.10 benign(0.023) TCGA-BT-A0YX-01 6 38881670 38881670 C T DNAH8 Missense_Mutation p.S3085F 0.30 probably_damaging(0.997) TCGA-BT-A0YX-01 6 38957823 38957823 C T DNAH8 Silent p.F4146F 0.18 TCGA-BT-A0YX-01 6 43114421 43114421 C T PTK7 Silent p.L910L 0.17 TCGA-BT-A0YX-01 6 44310891 44310891 C G SPATS1 Nonsense_Mutation p.S20* 0.16 TCGA-BT-A0YX-01 6 4943860 4943860 C G CDYL Missense_Mutation p.S401C 0.20 deleterious(0) probably_damaging(0.979) TCGA-BT-A0YX-01 6 51929769 51929769 G A PKHD1 Silent p.L320L 0.19 TCGA-BT-A0YX-01 6 7231404 7231404 C T RREB1 Silent p.V1024V 0.26 TCGA-BT-A0YX-01 6 73900420 73900420 C G KCNQ5 Missense_Mutation p.Q587E 0.22 deleterious(0) probably_damaging(0.994) TCGA-BT-A0YX-01 6 74533302 74533302 C T CD109 Missense_Mutation p.S1428L 0.19 tolerated(0.22) benign(0.005) TCGA-BT-A0YX-01 6 88854856 88854856 C G CNR1 Missense_Mutation p.Q46H 0.27 tolerated_low_confidence(0.25) benign(0.36) TCGA-BT-A0YX-01 7 100695124 100695124 C T MUC17 Silent p.F4328F 0.25 TCGA-BT-A0YX-01 7 101845024 101845024 G A CUX1 Missense_Mutation p.R827H 0.35 tolerated(0.06) unknown(0) TCGA-BT-A0YX-01 7 102940661 102940661 G C PMPCB Missense_Mutation p.E122Q 0.16 deleterious(0.05) possibly_damaging(0.715) TCGA-BT-A0YX-01 7 107253828 107253828 G C BCAP29 Missense_Mutation p.R214T 0.21 tolerated(0.43) possibly_damaging(0.595) TCGA-BT-A0YX-01 7 112096062 112096062 G A IFRD1 Missense_Mutation p.E69K 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-BT-A0YX-01 7 123332847 123332847 G C WASL Missense_Mutation p.P301A 0.26 tolerated(0.26) unknown(0) TCGA-BT-A0YX-01 7 127714730 127714730 G A SND1 Silent p.Q652Q 0.14 TCGA-BT-A0YX-01 7 132754904 132754904 G C CHCHD3 Nonsense_Mutation p.S56* 0.17 TCGA-BT-A0YX-01 7 136936106 136936106 C T PTN Missense_Mutation p.E108K 0.21 deleterious(0.03) possibly_damaging(0.894) TCGA-BT-A0YX-01 7 143883993 143883993 G C ARHGEF35 3'UTR 0.13 TCGA-BT-A0YX-01 7 149463159 149463159 C A ZNF467 Silent p.L144L 0.44 TCGA-BT-A0YX-01 7 154738261 154738261 C T PAXIP1 Missense_Mutation p.D1032N 0.13 deleterious(0) unknown(0) TCGA-BT-A0YX-01 7 2565989 2565989 C G LFNG Missense_Mutation p.F311L 0.25 deleterious(0.01) possibly_damaging(0.766) TCGA-BT-A0YX-01 7 27183051 27183051 G C HOXA5 Missense_Mutation p.S59W 0.20 deleterious(0) possibly_damaging(0.899) TCGA-BT-A0YX-01 7 30876370 30876370 C T FAM188B Missense_Mutation p.S410L 0.18 tolerated(0.08) benign(0.266) TCGA-BT-A0YX-01 7 31746835 31746835 G A PPP1R17 Missense_Mutation p.D136N 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.629) TCGA-BT-A0YX-01 7 42004188 42004188 C T GLI3 Missense_Mutation p.D1495N 0.18 deleterious(0.03) possibly_damaging(0.642) TCGA-BT-A0YX-01 7 44157622 44157622 C T POLD2 Missense_Mutation p.E88K 0.21 tolerated(0.17) benign(0.004) TCGA-BT-A0YX-01 7 44747299 44747299 G C OGDH Missense_Mutation p.R972T 0.19 deleterious(0) probably_damaging(0.989) TCGA-BT-A0YX-01 7 4830468 4830468 G C AP5Z1 Silent p.L701L 0.12 TCGA-BT-A0YX-01 7 6180583 6180583 G C USP42 Missense_Mutation p.D255H 0.13 deleterious(0) probably_damaging(0.992) TCGA-BT-A0YX-01 7 63538522 63538522 G C ZNF727 Missense_Mutation p.L365F 0.25 deleterious(0) benign(0.36) TCGA-BT-A0YX-01 7 7413118 7413118 C G COL28A1 Missense_Mutation p.E807Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 7 74167447 74167447 C T GTF2I Missense_Mutation p.S860L 0.14 deleterious(0.01) benign(0.435) TCGA-BT-A0YX-01 7 77885556 77885556 G A MAGI2 Missense_Mutation p.P584L 0.12 tolerated(0.57) possibly_damaging(0.826) TCGA-BT-A0YX-01 7 82585375 82585375 C T PCLO Missense_Mutation p.E1632K 0.06 unknown(0) TCGA-BT-A0YX-01 7 92116642 92116642 C T PEX1 3'UTR 0.40 TCGA-BT-A0YX-01 7 94919406 94919406 C G PPP1R9A Missense_Mutation p.L1306V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BT-A0YX-01 7 97362036 97362036 G T TAC1 Missense_Mutation p.D38Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-BT-A0YX-01 7 99170257 99170257 G A ZNF655 Missense_Mutation p.E211K 0.12 tolerated(0.12) possibly_damaging(0.486) TCGA-BT-A0YX-01 7 99170385 99170385 G A ZNF655 Silent p.G253G 0.24 TCGA-BT-A0YX-01 7 99170442 99170442 G A ZNF655 Silent p.E272E 0.15 TCGA-BT-A0YX-01 7 99170930 99170930 G C ZNF655 Missense_Mutation p.R435T 0.24 deleterious(0) benign(0.402) TCGA-BT-A0YX-01 8 10466192 10466192 G C RP1L1 Missense_Mutation p.Q1806E 0.21 unknown(0) TCGA-BT-A0YX-01 8 104987673 104987673 C G RIMS2 Missense_Mutation p.H956D 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BT-A0YX-01 8 117782565 117782565 T C UTP23 Missense_Mutation p.V108A 0.14 deleterious(0) benign(0.023) TCGA-BT-A0YX-01 8 125052230 125052230 C T FER1L6 Missense_Mutation p.H858Y 0.16 tolerated(0.16) benign(0.046) TCGA-BT-A0YX-01 8 144808291 144808291 C T FAM83H Missense_Mutation p.E1114K 0.19 deleterious(0.01) possibly_damaging(0.627) TCGA-BT-A0YX-01 8 144895147 144895147 G C SCRIB Intron 0.30 TCGA-BT-A0YX-01 8 22487503 22487503 C T BIN3 Silent p.Q104Q 0.17 TCGA-BT-A0YX-01 8 28206244 28206244 G C ZNF395 Missense_Mutation p.L512V 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A0YX-01 8 28574875 28574875 C G EXTL3 Missense_Mutation p.I433M 0.27 tolerated(0.06) possibly_damaging(0.794) TCGA-BT-A0YX-01 8 39806667 39806667 G C IDO2 Splice_Site p.X8_splice 0.19 TCGA-BT-A0YX-01 8 42585842 42585842 G A CHRNB3 Missense_Mutation p.E119K 0.20 deleterious(0.02) benign(0.042) TCGA-BT-A0YX-01 8 43211963 43211963 C G POTEA RNA 0.16 TCGA-BT-A0YX-01 8 48641538 48641538 C T SPIDR Missense_Mutation p.P827S 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A0YX-01 8 48641544 48641544 C T SPIDR Missense_Mutation p.L829F 0.20 tolerated(0.06) probably_damaging(0.962) TCGA-BT-A0YX-01 8 68163633 68163633 C G ARFGEF1 Missense_Mutation p.Q917H 0.12 tolerated(0.16) benign(0.008) TCGA-BT-A0YX-01 8 70650368 70650368 C G SLCO5A1 Missense_Mutation p.E444Q 0.11 deleterious(0) possibly_damaging(0.816) TCGA-BT-A0YX-01 8 75262801 75262801 C T GDAP1 Silent p.F35F 0.19 TCGA-BT-A0YX-01 8 86057846 86057846 C G LRRCC1 3'UTR 0.24 TCGA-BT-A0YX-01 8 95541352 95541352 C T KIAA1429 Missense_Mutation p.E276K 0.34 tolerated(0.15) benign(0.034) TCGA-BT-A0YX-01 8 99440459 99440459 C T KCNS2 Silent p.F84F 0.19 TCGA-BT-A0YX-01 8 99440510 99440510 C A KCNS2 Missense_Mutation p.F101L 0.24 deleterious(0) probably_damaging(0.982) TCGA-BT-A0YX-01 9 101825366 101825366 C G COL15A1 Nonsense_Mutation p.S1209* 0.23 TCGA-BT-A0YX-01 9 109687655 109687655 C T ZNF462 Missense_Mutation p.H488Y 0.20 benign(0.152) TCGA-BT-A0YX-01 9 111625697 111625697 G C ACTL7A Silent p.T365T 0.23 TCGA-BT-A0YX-01 9 111741738 111741738 C T CTNNAL1 Silent p.E308E 0.19 TCGA-BT-A0YX-01 9 113231341 113231341 G C SVEP1 Missense_Mutation p.F1013L 0.17 benign(0.002) TCGA-BT-A0YX-01 9 113312147 113312147 G A SVEP1 Missense_Mutation p.R257C 0.21 probably_damaging(1) TCGA-BT-A0YX-01 9 116131969 116131969 G A BSPRY Silent p.L252L 0.24 TCGA-BT-A0YX-01 9 123714866 123714866 C T C5 3'UTR 0.33 TCGA-BT-A0YX-01 9 127764247 127764247 C T SCAI Missense_Mutation p.E404K 0.22 deleterious(0.05) benign(0.233) TCGA-BT-A0YX-01 9 128111713 128111713 G A GAPVD1 Missense_Mutation p.E1099K 0.24 tolerated(0.06) benign(0.167) TCGA-BT-A0YX-01 9 130652994 130652994 T C ST6GALNAC6 Missense_Mutation p.N209S 0.17 benign(0.058) TCGA-BT-A0YX-01 9 130829327 130829327 C T NAIF1 Silent p.E18E 0.22 TCGA-BT-A0YX-01 9 130829460 130829460 C T NAIF1 5'UTR 0.15 TCGA-BT-A0YX-01 9 130914288 130914288 C G LCN2 Missense_Mutation p.F153L 0.19 deleterious(0) possibly_damaging(0.473) TCGA-BT-A0YX-01 9 131395126 131395126 G A SPTAN1 Missense_Mutation p.M2400I 0.15 deleterious(0.01) benign(0.002) TCGA-BT-A0YX-01 9 131517773 131517773 G A ZER1 Silent p.T24T 0.19 TCGA-BT-A0YX-01 9 131709436 131709436 G C DOLK Silent p.L49L 0.21 TCGA-BT-A0YX-01 9 131745618 131745618 G A NUP188 Missense_Mutation p.V615I 0.16 tolerated(0.22) probably_damaging(0.933) TCGA-BT-A0YX-01 9 133327632 133327632 C T ASS1 Missense_Mutation p.S6F 0.20 deleterious(0.01) benign(0.049) TCGA-BT-A0YX-01 9 133376534 133376534 G A ASS1 3'UTR 0.25 TCGA-BT-A0YX-01 9 133907468 133907468 G A LAMC3 Missense_Mutation p.D239N 0.14 tolerated(0.87) benign(0.075) TCGA-BT-A0YX-01 9 136266896 136266896 C T C9orf96 Missense_Mutation p.P410S 0.27 tolerated(0.22) benign(0.01) TCGA-BT-A0YX-01 9 136401759 136401759 C G ADAMTSL2 5'UTR 0.25 TCGA-BT-A0YX-01 9 138395832 138395832 C G MRPS2 Silent p.L248L 0.21 TCGA-BT-A0YX-01 9 138669288 138669288 C T KCNT1 Silent p.I818I 0.17 TCGA-BT-A0YX-01 9 139802612 139802612 G C TRAF2 Missense_Mutation p.E153Q 0.27 tolerated(0.09) benign(0.045) TCGA-BT-A0YX-01 9 139937474 139937474 C G NPDC1 Missense_Mutation p.R55T 0.28 tolerated(0.17) probably_damaging(0.932) TCGA-BT-A0YX-01 9 16435866 16435866 C A BNC2 Nonsense_Mutation p.E776* 0.27 TCGA-BT-A0YX-01 9 27036447 27036447 G C IFT74 Intron 0.22 TCGA-BT-A0YX-01 9 35404054 35404054 C T UNC13B 3'UTR 0.25 TCGA-BT-A0YX-01 9 35689748 35689748 C T TPM2 Missense_Mutation p.E23K 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-BT-A0YX-01 9 35736618 35736618 C G CREB3 Silent p.L337L 0.16 TCGA-BT-A0YX-01 9 37861519 37861519 C G DCAF10 3'UTR 0.22 TCGA-BT-A0YX-01 9 88190360 88190360 C T AGTPBP1 Missense_Mutation p.E1085K 0.26 deleterious(0) possibly_damaging(0.877) TCGA-BT-A0YX-01 9 96847533 96847533 G C PTPDC1 Missense_Mutation p.R80T 0.20 tolerated(0.14) benign(0.096) TCGA-BT-A0YX-01 9 98232132 98232132 C G PTCH1 Missense_Mutation p.E604Q 0.22 tolerated(0.08) benign(0.173) TCGA-BT-A0YX-01 9 98691087 98691087 C G ERCC6L2 Silent p.L575L 0.16 TCGA-BT-A0YX-01 X 100497935 100497935 C T DRP2 Missense_Mutation p.R340W 0.18 deleterious(0.02) benign(0.04) TCGA-BT-A0YX-01 X 100537423 100537423 C T TAF7L Missense_Mutation p.D186N 0.16 deleterious(0.04) possibly_damaging(0.762) TCGA-BT-A0YX-01 X 101097818 101097818 C T NXF5 5'UTR 0.27 TCGA-BT-A0YX-01 X 102974114 102974114 G C GLRA4 Silent p.L268L 0.20 TCGA-BT-A0YX-01 X 109695177 109695177 C G RGAG1 Silent p.V444V 0.19 TCGA-BT-A0YX-01 X 118708669 118708669 C G UBE2A 5'UTR 0.35 TCGA-BT-A0YX-01 X 119581866 119581866 T C LAMP2 Missense_Mutation p.K191E 0.25 tolerated(1) benign(0.003) TCGA-BT-A0YX-01 X 129185834 129185834 G A BCORL1 Splice_Site p.X1566_splice 0.21 TCGA-BT-A0YX-01 X 136649816 136649816 C G ZIC3 Missense_Mutation p.H322Q 0.23 deleterious(0.02) benign(0.01) TCGA-BT-A0YX-01 X 151303655 151303655 G C MAGEA10 Silent p.L146L 0.26 TCGA-BT-A0YX-01 X 153034400 153034400 C G PLXNB3 Intron 0.25 TCGA-BT-A0YX-01 X 153040417 153040417 G A PLXNB3 Silent p.E1361E 0.21 TCGA-BT-A0YX-01 X 15339616 15339616 C G PIGA 3'UTR 0.20 TCGA-BT-A0YX-01 X 153577785 153577785 C T FLNA Silent p.L2567L 0.29 TCGA-BT-A0YX-01 X 153629109 153629109 G A RPL10 Missense_Mutation p.E187K 0.18 tolerated(0.08) benign(0.03) TCGA-BT-A0YX-01 X 154157864 154157864 G C F8 Missense_Mutation p.Q1401E 0.17 tolerated(0.2) benign(0.019) TCGA-BT-A0YX-01 X 18926150 18926150 G C PHKA2 Silent p.L795L 0.17 TCGA-BT-A0YX-01 X 23803975 23803975 G C SAT1 3'UTR 0.24 TCGA-BT-A0YX-01 X 2876407 2876407 G A ARSE Silent p.S31S 0.27 TCGA-BT-A0YX-01 X 32429880 32429880 G A DMD Nonsense_Mutation p.Q1408* 0.22 TCGA-BT-A0YX-01 X 39933287 39933287 C T BCOR Missense_Mutation p.D438N 0.21 tolerated(0.06) possibly_damaging(0.781) TCGA-BT-A0YX-01 X 40568682 40568682 C G MED14 Silent p.L401L 0.16 TCGA-BT-A0YX-01 X 41077663 41077663 A T USP9X Missense_Mutation p.N2083I 0.23 tolerated(0.25) probably_damaging(0.991) TCGA-BT-A0YX-01 X 48418785 48418785 G A TBC1D25 Missense_Mutation p.G497S 0.20 tolerated(0.59) benign(0.017) TCGA-BT-A0YX-01 X 48542214 48542214 C T WAS 5'UTR 0.27 TCGA-BT-A0YX-01 X 49143574 49143574 G A PPP1R3F 3'UTR 0.22 TCGA-BT-A0YX-01 X 53587226 53587226 C T HUWE1 Silent p.L2553L 0.26 TCGA-BT-A0YX-01 X 54781511 54781511 C T ITIH6 Silent p.E1047E 0.23 TCGA-BT-A0YX-01 X 54956580 54956580 T C TRO Silent p.G1141G 0.20 TCGA-BT-A0YX-01 X 69283279 69283279 G A OTUD6A 3'UTR 0.18 TCGA-BT-A0YX-01 X 69719849 69719849 G A DLG3 Missense_Mutation p.D699N 0.18 tolerated(0.55) benign(0.407) TCGA-BT-A0YX-01 X 73070386 73070386 C A XIST RNA 0.13 TCGA-BT-A0YX-01 X 83723964 83723964 C T HDX Missense_Mutation p.R256K 0.22 tolerated(0.6) benign(0.08) TCGA-BT-A20J-01 10 104119055 104119055 C T GBF1 Missense_Mutation p.S347L 0.32 tolerated(0.16) benign(0.001) TCGA-BT-A20J-01 10 111640657 111640657 G A XPNPEP1 Silent p.I358I 0.17 TCGA-BT-A20J-01 10 114205095 114205095 A T ZDHHC6 Missense_Mutation p.C34S 0.24 deleterious(0.02) benign(0.171) TCGA-BT-A20J-01 10 115947866 115947866 C T TDRD1 Silent p.I92I 0.19 TCGA-BT-A20J-01 10 116361688 116361688 C G ABLIM1 Missense_Mutation p.E93Q 0.11 deleterious(0.02) benign(0.185) TCGA-BT-A20J-01 10 126631257 126631257 G C ZRANB1 Missense_Mutation p.L65F 0.33 tolerated(0.05) probably_damaging(0.998) TCGA-BT-A20J-01 10 13237083 13237083 A T MCM10 Silent p.P597P 0.12 TCGA-BT-A20J-01 10 134013904 134013904 G C DPYSL4 Missense_Mutation p.D286H 0.19 deleterious(0.01) possibly_damaging(0.698) TCGA-BT-A20J-01 10 17949694 17949694 A G MRC1L1 Missense_Mutation p.Y1353C 0.18 probably_damaging(0.945) TCGA-BT-A20J-01 10 29820209 29820209 G C SVIL Nonsense_Mutation p.S673* 0.16 TCGA-BT-A20J-01 10 3205933 3205933 G A PITRM1 Missense_Mutation p.H259Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-BT-A20J-01 10 3205948 3205948 G A PITRM1 Missense_Mutation p.H254Y 0.16 deleterious(0) probably_damaging(0.913) TCGA-BT-A20J-01 10 43297618 43297618 G A BMS1 Missense_Mutation p.G761R 0.12 deleterious(0.01) benign(0.093) TCGA-BT-A20J-01 10 52390060 52390060 G C RP11-50E11.3 RNA 0.14 TCGA-BT-A20J-01 10 54527886 54527886 G A MBL2 3'UTR 0.12 TCGA-BT-A20J-01 10 6274988 6274988 G C PFKFB3 3'UTR 0.16 TCGA-BT-A20J-01 10 72489913 72489913 G A ADAMTS14 Missense_Mutation p.R337H 0.14 deleterious(0.04) possibly_damaging(0.479) TCGA-BT-A20J-01 10 75214185 75214185 C T PPP3CB Missense_Mutation p.E391K 0.16 tolerated(0.15) benign(0.01) TCGA-BT-A20J-01 10 81701777 81701777 G A SFTPD Silent p.L161L 0.19 TCGA-BT-A20J-01 11 102584518 102584518 C G MMP8 Missense_Mutation p.E421Q 0.15 tolerated(0.07) benign(0.056) TCGA-BT-A20J-01 11 106849346 106849346 G A GUCY1A2 Silent p.L162L 0.12 TCGA-BT-A20J-01 11 10820632 10820632 G C EIF4G2 Missense_Mutation p.F855L 0.25 tolerated(1) benign(0.022) TCGA-BT-A20J-01 11 10820954 10820954 G A EIF4G2 Missense_Mutation p.S781F 0.25 tolerated(0.05) benign(0.011) TCGA-BT-A20J-01 11 10821742 10821742 G T EIF4G2 Missense_Mutation p.P672T 0.26 deleterious(0) probably_damaging(0.999) TCGA-BT-A20J-01 11 10825066 10825066 C T EIF4G2 Missense_Mutation p.M258I 0.16 tolerated(0.07) probably_damaging(0.985) TCGA-BT-A20J-01 11 113210177 113210177 G C TTC12 Silent p.L269L 0.18 TCGA-BT-A20J-01 11 113650985 113650985 C G CLDN25 Missense_Mutation p.I156M 0.18 deleterious(0) benign(0.403) TCGA-BT-A20J-01 11 113651015 113651015 C G CLDN25 Silent p.L166L 0.34 TCGA-BT-A20J-01 11 116661323 116661323 C G APOA5 Missense_Mutation p.E208Q 0.38 deleterious(0.01) possibly_damaging(0.624) TCGA-BT-A20J-01 11 118267074 118267074 G C UBE4A Missense_Mutation p.Q1047H 0.11 deleterious(0.03) probably_damaging(0.983) TCGA-BT-A20J-01 11 118267125 118267125 G C UBE4A Missense_Mutation p.E1064D 0.13 deleterious(0.05) benign(0.009) TCGA-BT-A20J-01 11 118373957 118373969 GGAACCTGGTCAG - KMT2A Frame_Shift_Del p.E2451* 0.30 TCGA-BT-A20J-01 11 119212379 119212379 G C MFRP Missense_Mutation p.S540C 0.35 deleterious(0) probably_damaging(0.975) TCGA-BT-A20J-01 11 123893845 123893845 C A OR10G9 Silent p.L42L 0.26 TCGA-BT-A20J-01 11 124012328 124012328 G C VWA5A Missense_Mutation p.D635H 0.35 tolerated(0.45) benign(0.071) TCGA-BT-A20J-01 11 124179832 124179832 G C OR8D1 Missense_Mutation p.F277L 0.42 deleterious(0.01) benign(0.198) TCGA-BT-A20J-01 11 1269170 1269170 C T MUC5B Missense_Mutation p.P3687L 0.13 unknown(0) TCGA-BT-A20J-01 11 134131719 134131719 G A ACAD8 Missense_Mutation p.E343K 0.33 tolerated(1) benign(0.001) TCGA-BT-A20J-01 11 134244148 134244148 G T GLB1L2 Nonsense_Mutation p.E569* 0.06 TCGA-BT-A20J-01 11 16812671 16812671 G A PLEKHA7 Silent p.L941L 0.17 TCGA-BT-A20J-01 11 20676504 20676504 C T SLC6A5 3'UTR 0.15 TCGA-BT-A20J-01 11 28045346 28045346 T A KIF18A Missense_Mutation p.K852N 0.11 deleterious(0) probably_damaging(0.999) TCGA-BT-A20J-01 11 34470812 34470812 G A CAT Missense_Mutation p.R47H 0.18 deleterious(0.05) possibly_damaging(0.849) TCGA-BT-A20J-01 11 4661760 4661760 C T OR51D1 Missense_Mutation p.A247V 0.10 deleterious(0.04) benign(0.375) TCGA-BT-A20J-01 11 47446777 47446777 C G PSMC3 Missense_Mutation p.L60F 0.14 deleterious(0.05) benign(0.067) TCGA-BT-A20J-01 11 48134415 48134415 C G PTPRJ Missense_Mutation p.Q78E 0.30 tolerated(1) benign(0.002) TCGA-BT-A20J-01 11 49229913 49229913 G A FOLH1 Missense_Mutation p.R17C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.518) TCGA-BT-A20J-01 11 56344784 56344784 C G OR5M10 Missense_Mutation p.K138N 0.04 deleterious(0) possibly_damaging(0.467) TCGA-BT-A20J-01 11 57413388 57413388 G A YPEL4 3'UTR 0.19 TCGA-BT-A20J-01 11 57507579 57507579 G C TMX2 Silent p.V251V 0.06 TCGA-BT-A20J-01 11 57886441 57886441 C T OR9I1 Missense_Mutation p.R159H 0.11 tolerated(1) benign(0.179) TCGA-BT-A20J-01 11 57970695 57970695 C G OR1S2 Missense_Mutation p.R320T 0.09 deleterious(0.02) benign(0.004) TCGA-BT-A20J-01 11 60617418 60617418 G T CCDC86 Missense_Mutation p.K298N 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-BT-A20J-01 11 61580081 61580081 C T FADS1 Missense_Mutation p.M182I 0.21 deleterious(0.01) benign(0.149) TCGA-BT-A20J-01 11 62437250 62437250 G C C11orf48 Missense_Mutation p.P59R 0.05 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-BT-A20J-01 11 62569095 62569095 C G NXF1 Missense_Mutation p.M216I 0.21 tolerated(0.08) possibly_damaging(0.505) TCGA-BT-A20J-01 11 63487538 63487538 G A RTN3 Missense_Mutation p.E522K 0.08 deleterious(0.05) benign(0.037) TCGA-BT-A20J-01 11 64067068 64067068 C G KCNK4 Missense_Mutation p.S351W 0.27 deleterious(0) probably_damaging(0.996) TCGA-BT-A20J-01 11 64669472 64669472 C T ATG2A Missense_Mutation p.E1361K 0.11 deleterious(0) possibly_damaging(0.468) TCGA-BT-A20J-01 11 64708057 64708057 A C C11orf85 Missense_Mutation p.S179A 0.18 tolerated_low_confidence(0.34) benign(0.053) TCGA-BT-A20J-01 11 65651873 65651873 C T FIBP Missense_Mutation p.D339N 0.13 tolerated(0.08) benign(0.222) TCGA-BT-A20J-01 11 66436149 66436149 C T RBM4B Missense_Mutation p.M342I 0.28 tolerated(0.3) benign(0.019) TCGA-BT-A20J-01 11 67431965 67431965 G T ALDH3B2 Missense_Mutation p.L259M 0.16 deleterious(0.03) probably_damaging(1) TCGA-BT-A20J-01 11 68525189 68525189 G A CPT1A Missense_Mutation p.R749C 0.09 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 11 68703931 68703931 C T IGHMBP2 Silent p.H661H 0.19 TCGA-BT-A20J-01 11 69456203 69456203 C T CCND1 Missense_Mutation p.S41L 0.20 tolerated(0.13) benign(0.393) TCGA-BT-A20J-01 11 71715792 71715792 C T NUMA1 Missense_Mutation p.R1967Q 0.35 probably_damaging(0.927) TCGA-BT-A20J-01 11 72945966 72945966 C T P2RY2 Silent p.F254F 0.09 TCGA-BT-A20J-01 11 72945972 72945972 C G P2RY2 Silent p.L256L 0.06 TCGA-BT-A20J-01 11 73627688 73627688 G A PAAF1 Silent p.L306L 0.09 TCGA-BT-A20J-01 11 7982182 7982182 G A NLRP10 Missense_Mutation p.S326F 0.27 tolerated(0.25) benign(0.272) TCGA-BT-A20J-01 11 85445395 85445395 G A SYTL2 Missense_Mutation p.S325F 0.22 deleterious(0.03) benign(0.361) TCGA-BT-A20J-01 11 8715632 8715632 G C ST5 3'UTR 0.12 TCGA-BT-A20J-01 11 9304976 9304976 C G TMEM41B Missense_Mutation p.E291Q 0.11 tolerated(0.19) benign(0.126) TCGA-BT-A20J-01 11 9308127 9308127 C G TMEM41B Missense_Mutation p.R194T 0.16 deleterious(0.01) possibly_damaging(0.833) TCGA-BT-A20J-01 11 93778980 93778980 G A HEPHL1 Silent p.L104L 0.29 TCGA-BT-A20J-01 11 93844129 93844129 G A HEPHL1 Missense_Mutation p.E1036K 0.42 tolerated(0.21) probably_damaging(1) TCGA-BT-A20J-01 11 9450660 9450660 G A IPO7 Missense_Mutation p.R503K 0.21 tolerated(1) benign(0.001) TCGA-BT-A20J-01 12 101767492 101767492 G A UTP20 Missense_Mutation p.E2360K 0.14 tolerated(0.29) benign(0.103) TCGA-BT-A20J-01 12 104725378 104725378 G A TXNRD1 Missense_Mutation p.E537K 0.19 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 12 105600843 105600843 C T APPL2 Missense_Mutation p.G212E 0.22 deleterious(0.02) benign(0.041) TCGA-BT-A20J-01 12 105601808 105601808 C G APPL2 Missense_Mutation p.E145Q 0.15 deleterious(0.04) benign(0.168) TCGA-BT-A20J-01 12 106740129 106740129 C T TCP11L2 Missense_Mutation p.P461S 0.14 tolerated(0.15) benign(0.243) TCGA-BT-A20J-01 12 107208957 107208957 G A RIC8B Missense_Mutation p.D206N 0.16 deleterious(0.04) possibly_damaging(0.634) TCGA-BT-A20J-01 12 10959334 10959334 C T TAS2R8 Silent p.Q82Q 0.13 TCGA-BT-A20J-01 12 111890567 111890567 C G ATXN2 3'UTR 0.09 TCGA-BT-A20J-01 12 112194215 112194215 G A ACAD10 Missense_Mutation p.D1071N 0.21 deleterious(0) benign(0.112) TCGA-BT-A20J-01 12 112477060 112477060 C A NAA25 Missense_Mutation p.K874N 0.20 deleterious(0) possibly_damaging(0.776) TCGA-BT-A20J-01 12 112609068 112609068 C T HECTD4 Splice_Site p.X3783_splice 0.33 TCGA-BT-A20J-01 12 11339184 11339184 G A TAS2R42 Silent p.L120L 0.32 TCGA-BT-A20J-01 12 116420239 116420239 C T MED13L Missense_Mutation p.E1709K 0.18 deleterious(0) probably_damaging(0.965) TCGA-BT-A20J-01 12 122398579 122398579 G A WDR66 Missense_Mutation p.R741H 0.07 tolerated(0.34) benign(0.002) TCGA-BT-A20J-01 12 123201371 123201371 C T HCAR3 5'UTR 0.21 TCGA-BT-A20J-01 12 124132646 124132646 G A GTF2H3 Missense_Mutation p.E113K 0.15 tolerated(0.17) benign(0.102) TCGA-BT-A20J-01 12 13142262 13142262 G A HEBP1 Missense_Mutation p.R56W 0.27 deleterious(0.02) probably_damaging(0.978) TCGA-BT-A20J-01 12 132380333 132380333 G A ULK1 Silent p.L70L 0.12 TCGA-BT-A20J-01 12 133327431 133327431 C G ANKLE2 Missense_Mutation p.R215S 0.09 tolerated(0.08) benign(0.173) TCGA-BT-A20J-01 12 16704083 16704083 C G LMO3 3'UTR 0.22 TCGA-BT-A20J-01 12 21028360 21028360 C G SLCO1B3 Missense_Mutation p.Q307E 0.21 tolerated(0.12) benign(0.196) TCGA-BT-A20J-01 12 26277038 26277038 C T BHLHE41 Silent p.L67L 0.22 TCGA-BT-A20J-01 12 29498381 29498381 C T ERGIC2 Missense_Mutation p.E274K 0.14 deleterious(0.01) possibly_damaging(0.854) TCGA-BT-A20J-01 12 331745 331745 G A SLC6A13 Missense_Mutation p.P490S 0.48 tolerated(0.15) benign(0.113) TCGA-BT-A20J-01 12 39726896 39726896 C T KIF21A Missense_Mutation p.R834H 0.06 deleterious(0) probably_damaging(0.996) TCGA-BT-A20J-01 12 4554764 4554764 G A FGF6 5'UTR 0.62 TCGA-BT-A20J-01 12 51449628 51449628 C T LETMD1 Missense_Mutation p.P175S 0.30 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 12 53839821 53839821 C T PRR13 Missense_Mutation p.S142F 0.33 tolerated_low_confidence(0.07) unknown(0) TCGA-BT-A20J-01 12 53839894 53839894 C G PRR13 3'UTR 0.26 TCGA-BT-A20J-01 12 53900619 53900619 C G NPFF Missense_Mutation p.E95Q 0.17 deleterious(0.03) benign(0.306) TCGA-BT-A20J-01 12 54448006 54448006 G A HOXC4 Silent p.P100P 0.16 TCGA-BT-A20J-01 12 6710690 6710690 G T CHD4 Silent p.L188L 0.48 TCGA-BT-A20J-01 12 6747303 6747303 C G ACRBP 3'UTR 0.50 TCGA-BT-A20J-01 12 69964277 69964277 G A FRS2 Missense_Mutation p.R78Q 0.20 deleterious(0) probably_damaging(0.949) TCGA-BT-A20J-01 12 7647847 7647847 C T CD163 Missense_Mutation p.G417E 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-BT-A20J-01 12 9229475 9229475 C G A2M Missense_Mutation p.E1137Q 0.09 tolerated(0.23) benign(0.142) TCGA-BT-A20J-01 12 9301536 9301536 G A PZP 3'UTR 0.41 TCGA-BT-A20J-01 12 94691157 94691157 C G PLXNC1 Missense_Mutation p.F1344L 0.15 tolerated(0.52) possibly_damaging(0.75) TCGA-BT-A20J-01 13 21562346 21562346 G A LATS2 Missense_Mutation p.R525C 0.12 deleterious(0.02) benign(0.394) TCGA-BT-A20J-01 13 38225536 38225536 C T TRPC4 Missense_Mutation p.E649K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BT-A20J-01 13 41507794 41507794 G A ELF1 Nonsense_Mutation p.Q543* 0.09 TCGA-BT-A20J-01 13 43643082 43643082 G A DNAJC15 Silent p.R59R 0.07 TCGA-BT-A20J-01 13 45147767 45147767 G C TSC22D1 Nonsense_Mutation p.S815* 0.15 TCGA-BT-A20J-01 13 46559516 46559516 C G ZC3H13 Missense_Mutation p.E546Q 0.07 possibly_damaging(0.861) TCGA-BT-A20J-01 13 46656653 46656653 G A CPB2 Nonsense_Mutation p.Q103* 0.25 TCGA-BT-A20J-01 13 52373793 52373793 C T DHRS12 Missense_Mutation p.E23K 0.43 tolerated(0.62) possibly_damaging(0.681) TCGA-BT-A20J-01 13 53036693 53036693 G C CKAP2 Missense_Mutation p.L433F 0.07 deleterious(0) probably_damaging(0.977) TCGA-BT-A20J-01 13 60348372 60348372 C T DIAPH3 Silent p.Q1090Q 0.48 TCGA-BT-A20J-01 13 75869130 75869130 G C TBC1D4 Missense_Mutation p.S1059C 0.16 deleterious(0) probably_damaging(0.975) TCGA-BT-A20J-01 13 95273330 95273330 A - GPR180 Splice_Site p.X246_splice 0.32 TCGA-BT-A20J-01 13 98829136 98829136 C T RNF113B Missense_Mutation p.E119K 0.38 deleterious(0.01) possibly_damaging(0.769) TCGA-BT-A20J-01 14 101451120 101451120 G C SNORD114-24 RNA 0.28 TCGA-BT-A20J-01 14 106307448 106307448 C T IGHD Silent p.L197L 0.21 TCGA-BT-A20J-01 14 21828595 21828597 AAT - SUPT16H In_Frame_Del p.I718del 0.14 TCGA-BT-A20J-01 14 22133602 22133602 C T OR4E2 Silent p.F102F 0.37 TCGA-BT-A20J-01 14 23312531 23312531 G T MMP14 Missense_Mutation p.D252Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-BT-A20J-01 14 23346713 23346713 G A LRP10 Missense_Mutation p.E707K 0.50 deleterious(0.02) probably_damaging(0.98) TCGA-BT-A20J-01 14 24607692 24607692 C T PSME1 Missense_Mutation p.R198W 0.20 tolerated(0.08) benign(0.12) TCGA-BT-A20J-01 14 32560018 32560018 A G ARHGAP5 Missense_Mutation p.E48G 0.34 deleterious(0.02) benign(0.002) TCGA-BT-A20J-01 14 32560228 32560228 G A ARHGAP5 Missense_Mutation p.R118H 0.19 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 14 42355925 42355925 C G LRFN5 Missense_Mutation p.L33V 0.16 deleterious(0.01) possibly_damaging(0.566) TCGA-BT-A20J-01 14 57270957 57270957 G A OTX2 Silent p.F74F 0.39 TCGA-BT-A20J-01 14 64519306 64519306 C T SYNE2 Missense_Mutation p.S2892L 0.54 benign(0.245) TCGA-BT-A20J-01 14 74196502 74196502 C T ELMSAN1 Missense_Mutation p.E646K 0.39 deleterious(0.01) benign(0.37) TCGA-BT-A20J-01 14 74196685 74196685 C G ELMSAN1 Missense_Mutation p.E585Q 0.27 deleterious(0.04) benign(0.312) TCGA-BT-A20J-01 14 74205546 74205546 G C ELMSAN1 Missense_Mutation p.S389C 0.35 deleterious(0.02) benign(0.285) TCGA-BT-A20J-01 14 91372604 91372604 C G RPS6KA5 Missense_Mutation p.M282I 0.06 tolerated(0.75) benign(0.004) TCGA-BT-A20J-01 14 93693381 93693381 G C UBR7 Nonstop_Mutation p.*426Yext*4 0.20 TCGA-BT-A20J-01 14 94526925 94526925 C T DDX24 Missense_Mutation p.E478K 0.21 deleterious(0) possibly_damaging(0.802) TCGA-BT-A20J-01 14 94929550 94929550 C T SERPINA9 Silent p.S396S 0.32 TCGA-BT-A20J-01 14 94956013 94956013 C G SERPINA12 Missense_Mutation p.E333Q 0.32 tolerated(0.14) benign(0.209) TCGA-BT-A20J-01 15 35044759 35044759 C T GJD2 Missense_Mutation p.E296K 0.13 tolerated(0.09) possibly_damaging(0.507) TCGA-BT-A20J-01 15 37390256 37390256 C T MEIS2 Missense_Mutation p.A53T 0.17 tolerated(0.32) benign(0.001) TCGA-BT-A20J-01 15 43817277 43817277 G C MAP1A Missense_Mutation p.E1202D 0.20 benign(0.034) TCGA-BT-A20J-01 15 44624216 44624216 G C CASC4 Missense_Mutation p.L172F 0.16 deleterious(0.01) benign(0.114) TCGA-BT-A20J-01 15 66793735 66793735 G C RPL4 Missense_Mutation p.I218M 0.21 deleterious(0.02) possibly_damaging(0.852) TCGA-BT-A20J-01 15 66853624 66853624 C G LCTL Missense_Mutation p.Q170H 0.16 deleterious(0.03) benign(0.208) TCGA-BT-A20J-01 15 90349355 90349355 C G ANPEP Missense_Mutation p.E154Q 0.19 tolerated(0.39) benign(0.145) TCGA-BT-A20J-01 16 11792004 11792004 C T TXNDC11 Missense_Mutation p.E362K 0.15 tolerated(0.09) probably_damaging(0.963) TCGA-BT-A20J-01 16 1416391 1416391 G A UNKL Silent p.I631I 0.53 TCGA-BT-A20J-01 16 1817918 1817918 G C MAPK8IP3 Missense_Mutation p.E1173D 0.17 tolerated(0.05) benign(0.315) TCGA-BT-A20J-01 16 21063188 21063188 G A DNAH3 Silent p.A1347A 0.31 TCGA-BT-A20J-01 16 21086798 21086798 C T DNAH3 Silent p.V1018V 0.17 TCGA-BT-A20J-01 16 21132082 21132082 C T DNAH3 Missense_Mutation p.A560T 0.15 tolerated(0.59) benign(0) TCGA-BT-A20J-01 16 21994570 21994570 C G UQCRC2 3'UTR 0.14 TCGA-BT-A20J-01 16 27640096 27640096 G A KIAA0556 Silent p.R85R 0.11 TCGA-BT-A20J-01 16 30721411 30721411 G A SRCAP Missense_Mutation p.E366K 0.20 unknown(0) TCGA-BT-A20J-01 16 30941563 30941563 C T FBXL19 Missense_Mutation p.S340L 0.14 tolerated(0.18) benign(0.104) TCGA-BT-A20J-01 16 30991419 30991419 G C SETD1A Missense_Mutation p.E1438Q 0.09 unknown(0) TCGA-BT-A20J-01 16 33647241 33647241 G A RP11-812E19.9 Missense_Mutation p.A120V 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-BT-A20J-01 16 48595890 48595890 C T N4BP1 Missense_Mutation p.G222R 0.17 tolerated(0.24) benign(0.081) TCGA-BT-A20J-01 16 5077281 5077281 C G NAGPA Missense_Mutation p.R425T 0.11 benign(0.002) TCGA-BT-A20J-01 16 66919264 66919264 G A PDP2 Silent p.L359L 0.07 TCGA-BT-A20J-01 16 67271177 67271177 C T FHOD1 Missense_Mutation p.D320N 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-BT-A20J-01 16 67514862 67514862 T A ATP6V0D1 Missense_Mutation p.E43V 0.25 deleterious(0) possibly_damaging(0.905) TCGA-BT-A20J-01 16 67514906 67514906 G C ATP6V0D1 Silent p.L28L 0.29 TCGA-BT-A20J-01 16 69143494 69143494 G C HAS3 Missense_Mutation p.E66Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-BT-A20J-01 16 70400696 70400696 G A DDX19A Missense_Mutation p.E318K 0.16 tolerated(0.11) benign(0.006) TCGA-BT-A20J-01 16 86612413 86612413 C G FOXL1 Silent p.L28L 0.18 TCGA-BT-A20J-01 16 87744970 87744970 C T KLHDC4 Silent p.P305P 0.14 TCGA-BT-A20J-01 16 89862344 89862344 G A FANCA Nonsense_Mutation p.Q326* 0.17 TCGA-BT-A20J-01 16 89940210 89940210 C T TCF25 Silent p.V45V 0.25 TCGA-BT-A20J-01 17 10310054 10310054 A C MYH8 Missense_Mutation p.C708W 0.23 deleterious(0.01) possibly_damaging(0.627) TCGA-BT-A20J-01 17 10399384 10399384 C T MYH1 Silent p.L1684L 0.25 TCGA-BT-A20J-01 17 11656266 11656266 G A DNAH9 Missense_Mutation p.D2243N 0.31 probably_damaging(0.999) TCGA-BT-A20J-01 17 12823090 12823090 C G ARHGAP44 Missense_Mutation p.Q136E 0.30 tolerated(0.11) possibly_damaging(0.856) TCGA-BT-A20J-01 17 16466491 16466491 C G ZNF287 Silent p.V228V 0.17 TCGA-BT-A20J-01 17 21731420 21731420 C G UBBP4 Intron 0.18 TCGA-BT-A20J-01 17 26101427 26101427 C A NOS2 Missense_Mutation p.M444I 0.13 tolerated(0.31) possibly_damaging(0.892) TCGA-BT-A20J-01 17 26945944 26945944 C A KIAA0100 Silent p.L1896L 0.22 TCGA-BT-A20J-01 17 27030605 27030605 G T PROCA1 Missense_Mutation p.P328T 0.14 deleterious(0) probably_damaging(0.993) TCGA-BT-A20J-01 17 293277 293277 G A FAM101B Missense_Mutation p.S38F 0.16 deleterious(0) probably_damaging(0.984) TCGA-BT-A20J-01 17 3195373 3195373 C T OR3A1 Silent p.T168T 0.38 TCGA-BT-A20J-01 17 33428002 33428002 C G RAD51D Missense_Mutation p.Q339H 0.36 deleterious(0.02) benign(0.014) TCGA-BT-A20J-01 17 37901554 37901554 C G GRB7 Missense_Mutation p.S380C 0.28 deleterious(0.03) possibly_damaging(0.849) TCGA-BT-A20J-01 17 38140722 38140722 C T PSMD3 Silent p.L132L 0.12 TCGA-BT-A20J-01 17 38447912 38447912 G C CDC6 Missense_Mutation p.D218H 0.33 deleterious(0) possibly_damaging(0.863) TCGA-BT-A20J-01 17 40265686 40265686 C G KAT2A Missense_Mutation p.G832A 0.13 tolerated(1) benign(0.001) TCGA-BT-A20J-01 17 40556890 40556890 C T PTRF Missense_Mutation p.E330K 0.23 deleterious(0.05) benign(0.003) TCGA-BT-A20J-01 17 41599484 41599484 C G DHX8 Missense_Mutation p.F1111L 0.61 deleterious(0) probably_damaging(0.97) TCGA-BT-A20J-01 17 43323891 43323891 C T FMNL1 Silent p.F1077F 0.28 TCGA-BT-A20J-01 17 46023710 46023710 G A PNPO Missense_Mutation p.E190K 0.08 tolerated(0.1) probably_damaging(0.984) TCGA-BT-A20J-01 17 47004453 47004453 C T UBE2Z Missense_Mutation p.S341L 0.11 deleterious(0.01) benign(0.206) TCGA-BT-A20J-01 17 48745049 48745049 C G ABCC3 Silent p.L522L 0.09 TCGA-BT-A20J-01 17 4877755 4877755 C G CAMTA2 Missense_Mutation p.Q670H 0.15 deleterious(0) probably_damaging(0.995) TCGA-BT-A20J-01 17 49280217 49280217 C T MBTD1 Missense_Mutation p.R303Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-BT-A20J-01 17 57089713 57089713 C A TRIM37 Nonsense_Mutation p.G891* 0.15 TCGA-BT-A20J-01 17 66042657 66042657 C G KPNA2 Missense_Mutation p.S512C 0.11 deleterious(0.02) possibly_damaging(0.572) TCGA-BT-A20J-01 17 66042674 66042674 C A KPNA2 Missense_Mutation p.Q518K 0.11 tolerated(0.22) possibly_damaging(0.589) TCGA-BT-A20J-01 17 66042773 66042773 C T KPNA2 3'UTR 0.10 TCGA-BT-A20J-01 17 68128891 68128891 C G KCNJ16 Silent p.L221L 0.15 TCGA-BT-A20J-01 17 68129403 68129403 C T KCNJ16 Missense_Mutation p.S392F 0.08 deleterious(0.03) benign(0.173) TCGA-BT-A20J-01 17 72305591 72305591 G C DNAI2 Intron 0.29 TCGA-BT-A20J-01 17 73034970 73034970 A G ATP5H 3'UTR 0.16 TCGA-BT-A20J-01 17 73205991 73205991 C T NUP85 Silent p.I67I 0.12 TCGA-BT-A20J-01 17 73554290 73554290 G A LLGL2 Silent p.V76V 0.13 TCGA-BT-A20J-01 17 73623508 73623508 C G RECQL5 Missense_Mutation p.Q990H 0.13 tolerated(0.52) benign(0.017) TCGA-BT-A20J-01 17 73623520 73623520 C T RECQL5 Silent p.L986L 0.14 TCGA-BT-A20J-01 17 73624402 73624402 C G RECQL5 Missense_Mutation p.D901H 0.13 tolerated(0.15) benign(0.001) TCGA-BT-A20J-01 17 73624837 73624837 C T RECQL5 Missense_Mutation p.C832Y 0.13 tolerated(1) benign(0.002) TCGA-BT-A20J-01 17 73625129 73625129 C T RECQL5 Missense_Mutation p.E792K 0.10 tolerated(0.44) benign(0.077) TCGA-BT-A20J-01 17 74071212 74071212 C T GALR2 Missense_Mutation p.A83V 0.11 deleterious(0.04) probably_damaging(1) TCGA-BT-A20J-01 17 74901357 74901357 C T MGAT5B Missense_Mutation p.A277V 0.19 tolerated(0.61) benign(0.008) TCGA-BT-A20J-01 17 7578419 7578419 C T TP53 Missense_Mutation p.E171K 0.35 deleterious(0.03) possibly_damaging(0.738) TCGA-BT-A20J-01 17 7578493 7578493 C G TP53 Missense_Mutation p.W146S 0.37 tolerated(0.75) probably_damaging(0.918) TCGA-BT-A20J-01 17 79165000 79165000 C T AZI1 Missense_Mutation p.E920K 0.22 deleterious(0.02) probably_damaging(0.95) TCGA-BT-A20J-01 17 80401915 80401915 C T C17orf62 Missense_Mutation p.D177N 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.638) TCGA-BT-A20J-01 17 80708353 80708353 C G FN3K Missense_Mutation p.L218V 0.12 deleterious(0) probably_damaging(0.973) TCGA-BT-A20J-01 18 10526073 10526073 C G NAPG 5'UTR 0.14 TCGA-BT-A20J-01 18 2892402 2892402 G C EMILIN2 Missense_Mutation p.K759N 0.23 deleterious(0) possibly_damaging(0.884) TCGA-BT-A20J-01 18 33780103 33780103 C T MOCOS Missense_Mutation p.H253Y 0.27 tolerated(0.95) benign(0.03) TCGA-BT-A20J-01 18 7024444 7024444 G C LAMA1 Silent p.L808L 0.14 TCGA-BT-A20J-01 18 77794586 77794586 G A RBFA Missense_Mutation p.E31K 0.38 tolerated(0.26) benign(0.009) TCGA-BT-A20J-01 18 78005253 78005253 C T PARD6G 5'UTR 0.22 TCGA-BT-A20J-01 19 10478793 10478793 C G TYK2 Missense_Mutation p.D135H 0.25 deleterious(0.03) benign(0.009) TCGA-BT-A20J-01 19 11343960 11343960 C G DOCK6 Missense_Mutation p.K879N 0.35 tolerated(0.27) benign(0.056) TCGA-BT-A20J-01 19 12188503 12188503 G A ZNF844 3'UTR 0.14 TCGA-BT-A20J-01 19 15510131 15510131 C T AKAP8L Missense_Mutation p.R380Q 0.19 deleterious(0) possibly_damaging(0.885) TCGA-BT-A20J-01 19 15918161 15918161 G C OR10H1 Missense_Mutation p.I229M 0.13 tolerated(0.15) possibly_damaging(0.702) TCGA-BT-A20J-01 19 16860125 16860125 C T NWD1 Silent p.L224L 0.27 TCGA-BT-A20J-01 19 17311468 17311468 C T MYO9B Missense_Mutation p.R1465C 0.23 deleterious(0.03) benign(0.008) TCGA-BT-A20J-01 19 17535916 17535916 C T MVB12A 3'UTR 0.38 TCGA-BT-A20J-01 19 18896563 18896563 C T COMP Missense_Mutation p.D530N 0.37 deleterious(0) probably_damaging(0.982) TCGA-BT-A20J-01 19 2210632 2210632 G T DOT1L Nonsense_Mutation p.E377* 0.10 TCGA-BT-A20J-01 19 2210638 2210638 G A DOT1L Missense_Mutation p.E379K 0.11 deleterious(0) benign(0.107) TCGA-BT-A20J-01 19 2210754 2210754 G A DOT1L Missense_Mutation p.M417I 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.758) TCGA-BT-A20J-01 19 2213597 2213597 G A DOT1L Silent p.Q539Q 0.10 TCGA-BT-A20J-01 19 2213760 2213760 G T DOT1L Intron 0.18 TCGA-BT-A20J-01 19 2213856 2213856 G A DOT1L Silent p.V556V 0.10 TCGA-BT-A20J-01 19 2216484 2216484 G A DOT1L Missense_Mutation p.E710K 0.19 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BT-A20J-01 19 2216699 2216699 G A DOT1L Silent p.L781L 0.10 TCGA-BT-A20J-01 19 23926476 23926476 C T ZNF681 Missense_Mutation p.D626N 0.47 deleterious(0.01) benign(0.012) TCGA-BT-A20J-01 19 23926861 23926861 C G ZNF681 Missense_Mutation p.K497N 0.26 tolerated(0.05) probably_damaging(0.937) TCGA-BT-A20J-01 19 23927978 23927978 C G ZNF681 Missense_Mutation p.G125A 0.21 tolerated(0.48) probably_damaging(0.91) TCGA-BT-A20J-01 19 31039228 31039228 G A ZNF536 Missense_Mutation p.G901E 0.14 deleterious(0.01) possibly_damaging(0.894) TCGA-BT-A20J-01 19 33089074 33089074 C G ANKRD27 Missense_Mutation p.E1044Q 0.43 deleterious_low_confidence(0.05) benign(0.403) TCGA-BT-A20J-01 19 36218436 36218436 G C KMT2B Silent p.L1405L 0.12 TCGA-BT-A20J-01 19 36322010 36322010 C T NPHS1 Silent p.L1142L 0.09 TCGA-BT-A20J-01 19 37211048 37211048 G A ZNF567 Silent p.E443E 0.40 TCGA-BT-A20J-01 19 38976369 38976369 C G RYR1 Missense_Mutation p.Q1692E 0.34 possibly_damaging(0.816) TCGA-BT-A20J-01 19 39219769 39219769 C T ACTN4 Missense_Mutation p.S851F 0.11 deleterious(0) probably_damaging(0.997) TCGA-BT-A20J-01 19 39234873 39234873 C G CAPN12 5'UTR 0.08 TCGA-BT-A20J-01 19 39361468 39361468 C A RINL Nonsense_Mutation p.E256* 0.47 TCGA-BT-A20J-01 19 39361736 39361736 C T RINL Missense_Mutation p.A195T 0.40 tolerated(0.12) benign(0.025) TCGA-BT-A20J-01 19 39521863 39521863 G A FBXO27 Silent p.F154F 0.12 TCGA-BT-A20J-01 19 4048050 4048050 G A ZBTB7A Silent p.L485L 0.18 TCGA-BT-A20J-01 19 40902869 40902869 G A PRX Nonsense_Mutation p.R464* 0.33 TCGA-BT-A20J-01 19 41209631 41209631 C T ADCK4 Missense_Mutation p.V236M 0.07 tolerated(1) benign(0.061) TCGA-BT-A20J-01 19 42819374 42819374 C G TMEM145 Missense_Mutation p.I180M 0.15 tolerated(0.1) benign(0.123) TCGA-BT-A20J-01 19 44235749 44235749 C G SMG9 Nonstop_Mutation p.*521Sext*38 0.13 TCGA-BT-A20J-01 19 44236886 44236886 G C SMG9 Intron 0.21 TCGA-BT-A20J-01 19 46330779 46330779 C T SYMPK Missense_Mutation p.E724K 0.28 tolerated(0.08) benign(0.016) TCGA-BT-A20J-01 19 47207801 47207801 G A PRKD2 Missense_Mutation p.S206L 0.31 tolerated(0.07) benign(0.17) TCGA-BT-A20J-01 19 47421942 47421949 GCAAGAAA - ARHGAP35 Frame_Shift_Del p.K6Cfs*40 0.11 TCGA-BT-A20J-01 19 47425167 47425167 C T ARHGAP35 Nonsense_Mutation p.Q1079* 0.53 TCGA-BT-A20J-01 19 47856690 47856690 C G DHX34 Missense_Mutation p.R135G 0.08 tolerated(0.34) benign(0.004) TCGA-BT-A20J-01 19 48892915 48892915 G A KDELR1 Silent p.F82F 0.14 TCGA-BT-A20J-01 19 49113235 49113235 C T FAM83E Missense_Mutation p.R219Q 0.60 tolerated(0.4) benign(0.046) TCGA-BT-A20J-01 19 49458852 49458852 C T BAX Nonsense_Mutation p.Q28* 0.48 TCGA-BT-A20J-01 19 49464129 49464129 C T BAX Silent p.L144L 0.48 TCGA-BT-A20J-01 19 49464256 49464256 C T BAX Silent p.L187L 0.44 TCGA-BT-A20J-01 19 49464317 49464317 C T BAX Missense_Mutation p.S207L 0.44 unknown(0) TCGA-BT-A20J-01 19 49510338 49510338 C T RUVBL2 Missense_Mutation p.S110F 0.18 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 19 50334032 50334032 C G MED25 Missense_Mutation p.P330R 0.51 deleterious(0.03) benign(0.026) TCGA-BT-A20J-01 19 52724377 52724377 C T PPP2R1A Silent p.F503F 0.46 TCGA-BT-A20J-01 19 53057257 53057257 G C ZNF808 Missense_Mutation p.R363T 0.05 tolerated(0.11) possibly_damaging(0.749) TCGA-BT-A20J-01 19 53793212 53793212 G C BIRC8 Missense_Mutation p.S139C 0.10 tolerated(0.07) benign(0.029) TCGA-BT-A20J-01 19 53857394 53857394 C T ZNF845 3'UTR 0.31 TCGA-BT-A20J-01 19 55263168 55263168 C G KIR2DL3 Silent p.L261L 0.13 TCGA-BT-A20J-01 19 55441934 55441934 T A NLRP7 Missense_Mutation p.I915L 0.08 tolerated(0.39) possibly_damaging(0.51) TCGA-BT-A20J-01 19 55624149 55624149 C T PPP1R12C Silent p.E112E 0.08 TCGA-BT-A20J-01 19 56180822 56180822 C G U2AF2 Missense_Mutation p.Q353E 0.44 tolerated(0.43) benign(0.001) TCGA-BT-A20J-01 19 57037351 57037351 C T ZNF471 3'UTR 0.15 TCGA-BT-A20J-01 19 58233027 58233027 C G ZNF671 Missense_Mutation p.E143Q 0.11 deleterious(0.03) benign(0.238) TCGA-BT-A20J-01 19 58772988 58772988 C T ZNF544 Missense_Mutation p.S339L 0.25 deleterious(0) benign(0.004) TCGA-BT-A20J-01 19 59009810 59009810 G A SLC27A5 3'UTR 0.23 TCGA-BT-A20J-01 19 59060782 59060782 G A TRIM28 Missense_Mutation p.E583K 0.13 tolerated(0.36) benign(0.084) TCGA-BT-A20J-01 19 7676406 7676406 C T CAMSAP3 Missense_Mutation p.S403F 0.38 tolerated(0.14) probably_damaging(0.976) TCGA-BT-A20J-01 19 7676584 7676584 C G CAMSAP3 Missense_Mutation p.S429C 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-BT-A20J-01 19 9075858 9075858 C G MUC16 Missense_Mutation p.R3863T 0.22 unknown(0) TCGA-BT-A20J-01 19 9801569 9801569 G C ZNF812 Missense_Mutation p.H204D 0.17 tolerated(0.24) benign(0) TCGA-BT-A20J-01 1 110740695 110740695 C T SLC6A17 Intron 0.24 TCGA-BT-A20J-01 1 111772386 111772386 G A CHI3L2 Intron 0.28 TCGA-BT-A20J-01 1 115124224 115124224 C G BCAS2 5'UTR 0.22 TCGA-BT-A20J-01 1 116206759 116206759 G C VANGL1 Missense_Mutation p.D228H 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 1 1268732 1268732 G A TAS1R3 Missense_Mutation p.E525K 0.27 tolerated(1) benign(0.002) TCGA-BT-A20J-01 1 146397376 146397376 G C NBPF12 Missense_Mutation p.D65H 0.13 probably_damaging(0.998) TCGA-BT-A20J-01 1 149905798 149905798 C G MTMR11 Missense_Mutation p.D241H 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 1 149916075 149916075 C T OTUD7B Missense_Mutation p.R738Q 0.26 tolerated_low_confidence(0.22) benign(0.047) TCGA-BT-A20J-01 1 150193030 150193030 C T ANP32E Missense_Mutation p.R257Q 0.11 deleterious(0) unknown(0) TCGA-BT-A20J-01 1 150259343 150259343 G A C1orf51 Missense_Mutation p.D379N 0.22 tolerated_low_confidence(0.1) benign(0.008) TCGA-BT-A20J-01 1 151861806 151861806 G A THEM4 Silent p.L110L 0.08 TCGA-BT-A20J-01 1 152192570 152192570 C T HRNR Missense_Mutation p.G512D 0.34 unknown(0) TCGA-BT-A20J-01 1 153906268 153906268 C G DENND4B Silent p.L1007L 0.38 TCGA-BT-A20J-01 1 154223614 154223614 G C UBAP2L Missense_Mutation p.E437D 0.10 tolerated(0.37) unknown(0) TCGA-BT-A20J-01 1 155319163 155319163 C T ASH1L Silent p.V2503V 0.26 TCGA-BT-A20J-01 1 155896471 155896471 G A KIAA0907 Missense_Mutation p.S226L 0.29 tolerated(0.27) possibly_damaging(0.889) TCGA-BT-A20J-01 1 156446809 156446809 G A MEF2D Missense_Mutation p.H284Y 0.08 tolerated(0.29) possibly_damaging(0.843) TCGA-BT-A20J-01 1 158226807 158226807 G A CD1A Missense_Mutation p.R279Q 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-BT-A20J-01 1 160282929 160282929 G T COPA Missense_Mutation p.H291N 0.16 tolerated(0.61) benign(0.003) TCGA-BT-A20J-01 1 161123631 161123631 C G UFC1 5'UTR 0.50 TCGA-BT-A20J-01 1 161600882 161600882 C T FCGR3B Missense_Mutation p.M37I 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-BT-A20J-01 1 16735685 16735685 C T SPATA21 Missense_Mutation p.E201K 0.07 deleterious(0.01) possibly_damaging(0.521) TCGA-BT-A20J-01 1 1688188 1688188 C T NADK Intron 0.21 TCGA-BT-A20J-01 1 173839952 173839952 C T ZBTB37 Nonsense_Mutation p.Q197* 0.23 TCGA-BT-A20J-01 1 173839957 173839957 C T ZBTB37 Silent p.I198I 0.23 TCGA-BT-A20J-01 1 17413062 17413062 G C PADI2 Nonsense_Mutation p.S263* 0.15 TCGA-BT-A20J-01 1 180775291 180775291 G C XPR1 Missense_Mutation p.E181Q 0.11 deleterious(0.03) benign(0.285) TCGA-BT-A20J-01 1 19653820 19653820 G A PQLC2 Missense_Mutation p.E240K 0.25 tolerated(0.12) benign(0.426) TCGA-BT-A20J-01 1 197112229 197112229 C G ASPM Missense_Mutation p.E385Q 0.16 tolerated(0.34) possibly_damaging(0.467) TCGA-BT-A20J-01 1 205741642 205741642 G C RAB7L1 Missense_Mutation p.Q60E 0.49 deleterious(0) probably_damaging(0.965) TCGA-BT-A20J-01 1 21307591 21307591 G A EIF4G3 Silent p.L61L 0.21 TCGA-BT-A20J-01 1 216243607 216243607 C T USH2A Missense_Mutation p.R1962K 0.12 benign(0.034) TCGA-BT-A20J-01 1 223286345 223286345 C T TLR5 Missense_Mutation p.G10E 0.11 deleterious(0) benign(0.001) TCGA-BT-A20J-01 1 22404924 22404924 C T CDC42 Intron 0.19 TCGA-BT-A20J-01 1 229568092 229568092 C T ACTA1 Missense_Mutation p.D181N 0.11 tolerated_low_confidence(0.12) probably_damaging(0.952) TCGA-BT-A20J-01 1 236390014 236390014 G C ERO1LB Missense_Mutation p.F246L 0.24 deleterious(0) probably_damaging(0.912) TCGA-BT-A20J-01 1 247150452 247150452 C G ZNF695 Missense_Mutation p.K455N 0.55 deleterious(0.02) probably_damaging(0.936) TCGA-BT-A20J-01 1 27087921 27087921 C T ARID1A Silent p.I736I 0.25 TCGA-BT-A20J-01 1 27744801 27744801 G A WASF2 Missense_Mutation p.P130S 0.20 deleterious(0) unknown(0) TCGA-BT-A20J-01 1 29185686 29185686 G T OPRD1 Missense_Mutation p.V150F 0.20 deleterious(0) probably_damaging(0.972) TCGA-BT-A20J-01 1 2939420 2939420 C G ACTRT2 3'UTR 0.09 TCGA-BT-A20J-01 1 3670737 3670737 G A CCDC27 Missense_Mutation p.R125Q 0.16 tolerated(0.15) possibly_damaging(0.776) TCGA-BT-A20J-01 1 39827347 39827347 C T MACF1 Nonsense_Mutation p.Q2195* 0.86 TCGA-BT-A20J-01 1 4772146 4772146 G A AJAP1 Silent p.A72A 0.22 TCGA-BT-A20J-01 1 50666507 50666507 C T ELAVL4 Intron 0.20 TCGA-BT-A20J-01 1 51778567 51778567 C G TTC39A Missense_Mutation p.E69D 0.18 tolerated(0.2) possibly_damaging(0.755) TCGA-BT-A20J-01 1 52499439 52499439 C G TXNDC12 Intron 0.27 TCGA-BT-A20J-01 1 54233563 54233563 C G NDC1 3'UTR 0.38 TCGA-BT-A20J-01 1 78249010 78249010 C G FAM73A Missense_Mutation p.L57V 0.06 tolerated(0.8) benign(0.015) TCGA-BT-A20J-01 1 86954697 86954697 C T CLCA1 Missense_Mutation p.P401S 0.46 tolerated(1) benign(0.026) TCGA-BT-A20J-01 1 86961284 86961284 G A CLCA1 Missense_Mutation p.G680E 0.12 tolerated(0.23) probably_damaging(0.972) TCGA-BT-A20J-01 1 92446495 92446495 G A BRDT Missense_Mutation p.E504K 0.10 deleterious(0.03) benign(0.043) TCGA-BT-A20J-01 1 95712512 95712512 C G RWDD3 3'UTR 0.22 TCGA-BT-A20J-01 20 17240965 17240965 G T PCSK2 Missense_Mutation p.K86N 0.15 tolerated(0.3) benign(0.039) TCGA-BT-A20J-01 20 20031155 20031155 C A CRNKL1 Missense_Mutation p.D216Y 0.28 deleterious(0) probably_damaging(0.987) TCGA-BT-A20J-01 20 23350821 23350821 G A GZF1 Missense_Mutation p.E627K 0.23 tolerated(0.11) possibly_damaging(0.642) TCGA-BT-A20J-01 20 30137129 30137129 C A HM13 Silent p.V220V 0.12 TCGA-BT-A20J-01 20 3210005 3210005 G T SLC4A11 Missense_Mutation p.F655L 0.10 deleterious(0) probably_damaging(0.993) TCGA-BT-A20J-01 20 32379155 32379155 G A ZNF341 Silent p.A792A 0.11 TCGA-BT-A20J-01 20 33296631 33296631 G C TP53INP2 Missense_Mutation p.D30H 0.09 deleterious(0) probably_damaging(0.936) TCGA-BT-A20J-01 20 33440000 33440000 G A GGT7 Silent p.F515F 0.11 TCGA-BT-A20J-01 20 33632447 33632447 G A TRPC4AP Silent p.L242L 0.15 TCGA-BT-A20J-01 20 34435272 34435272 G A PHF20 Missense_Mutation p.E86K 0.30 tolerated(0.21) benign(0.007) TCGA-BT-A20J-01 20 34797578 34797578 A G EPB41L1 Missense_Mutation p.T613A 0.47 tolerated(0.12) probably_damaging(0.996) TCGA-BT-A20J-01 20 36982714 36982714 C G LBP Silent p.V133V 0.10 TCGA-BT-A20J-01 20 37357141 37357141 C G SLC32A1 Silent p.R479R 0.07 TCGA-BT-A20J-01 20 42164893 42164893 C T L3MBTL1 Silent p.L672L 0.20 TCGA-BT-A20J-01 20 43043252 43043252 G A HNF4A Missense_Mutation p.E200K 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-BT-A20J-01 20 46307544 46307544 G A SULF2 Missense_Mutation p.P357S 0.11 tolerated(0.12) probably_damaging(1) TCGA-BT-A20J-01 20 469330 469330 G C CSNK2A1 Missense_Mutation p.I272M 0.18 deleterious(0.01) possibly_damaging(0.89) TCGA-BT-A20J-01 20 57769685 57769685 C T ZNF831 Missense_Mutation p.S1204F 0.25 deleterious(0) probably_damaging(0.997) TCGA-BT-A20J-01 20 58558027 58558027 C G CDH26 Missense_Mutation p.S148C 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20J-01 20 6022478 6022478 G C LRRN4 Missense_Mutation p.I471M 0.18 tolerated(0.11) possibly_damaging(0.541) TCGA-BT-A20J-01 21 17236685 17236685 C G USP25 Missense_Mutation p.I812M 0.44 tolerated(0.09) benign(0.133) TCGA-BT-A20J-01 21 31023467 31023467 C T GRIK1 Missense_Mutation p.E309K 0.08 tolerated(0.23) benign(0.138) TCGA-BT-A20J-01 21 31655209 31655209 G A KRTAP24-1 Silent p.V14V 0.29 TCGA-BT-A20J-01 21 31869328 31869328 C T KRTAP19-4 Missense_Mutation p.R34K 0.18 tolerated_low_confidence(0.4) unknown(0) TCGA-BT-A20J-01 21 32519265 32519265 G C TIAM1 Silent p.L1141L 0.20 TCGA-BT-A20J-01 21 34038745 34038745 G C SYNJ1 Missense_Mutation p.I689M 0.14 deleterious(0) probably_damaging(0.991) TCGA-BT-A20J-01 21 34932335 34932335 C T SON Intron 0.12 TCGA-BT-A20J-01 21 37595610 37595610 C G DOPEY2 Silent p.L444L 0.16 TCGA-BT-A20J-01 21 45876864 45876864 G A LRRC3 Missense_Mutation p.G113R 0.12 tolerated(0.33) benign(0.288) TCGA-BT-A20J-01 21 47359997 47359997 G A PCBP3 Silent p.Q321Q 0.17 TCGA-BT-A20J-01 22 20941008 20941008 G A MED15 3'UTR 0.23 TCGA-BT-A20J-01 22 21834099 21834099 G C PI4KAP2 RNA 0.15 TCGA-BT-A20J-01 22 24468354 24468354 C T CABIN1 Silent p.V842V 0.16 TCGA-BT-A20J-01 22 29835056 29835056 C T RFPL1 Silent p.P92P 0.17 TCGA-BT-A20J-01 22 29921847 29921847 C T THOC5 Silent p.L385L 0.17 TCGA-BT-A20J-01 22 31266642 31266642 C T OSBP2 Silent p.F360F 0.22 TCGA-BT-A20J-01 22 31946237 31946237 C T SFI1 Intron 0.17 TCGA-BT-A20J-01 22 32788307 32788307 C T RTCB Missense_Mutation p.D444N 0.15 tolerated(0.28) benign(0.02) TCGA-BT-A20J-01 22 33255169 33255169 C T TIMP3 Silent p.I147I 0.24 TCGA-BT-A20J-01 22 36689431 36689431 C T MYH9 Missense_Mutation p.E1347K 0.21 probably_damaging(0.989) TCGA-BT-A20J-01 22 38352817 38352817 G A POLR2F Missense_Mutation p.E20K 0.16 tolerated(0.12) unknown(0) TCGA-BT-A20J-01 22 41647082 41647082 G T RANGAP1 Missense_Mutation p.S471Y 0.18 deleterious(0.04) possibly_damaging(0.585) TCGA-BT-A20J-01 22 46508583 46508583 C T FLJ27365 3'UTR 0.32 TCGA-BT-A20J-01 2 100199373 100199373 C T AFF3 Missense_Mutation p.E919K 0.20 tolerated(0.08) benign(0.04) TCGA-BT-A20J-01 2 10126392 10126392 C T GRHL1 Silent p.I417I 0.15 TCGA-BT-A20J-01 2 112740456 112740456 G A MERTK Silent p.L394L 0.22 TCGA-BT-A20J-01 2 112740460 112740460 G A MERTK Missense_Mutation p.E396K 0.22 tolerated(0.4) benign(0.002) TCGA-BT-A20J-01 2 112740501 112740501 G A MERTK Silent p.P409P 0.23 TCGA-BT-A20J-01 2 112740537 112740537 G C MERTK Silent p.R421R 0.21 TCGA-BT-A20J-01 2 11427791 11427791 G C ROCK2 Missense_Mutation p.F71L 0.19 deleterious(0) possibly_damaging(0.758) TCGA-BT-A20J-01 2 128260414 128260414 C T IWS1 Missense_Mutation p.D482N 0.25 deleterious(0.02) benign(0.009) TCGA-BT-A20J-01 2 128918082 128918082 G A UGGT1 Missense_Mutation p.D871N 0.12 tolerated(0.54) benign(0.111) TCGA-BT-A20J-01 2 130738132 130738132 G A RAB6C Silent p.L148L 0.17 TCGA-BT-A20J-01 2 133543084 133543084 C T NCKAP5 Missense_Mutation p.E434K 0.17 deleterious(0) probably_damaging(0.999) TCGA-BT-A20J-01 2 145161507 145161507 C T ZEB2 Silent p.V261V 0.09 TCGA-BT-A20J-01 2 152496556 152496556 G C NEB Missense_Mutation p.L2902V 0.22 probably_damaging(0.999) TCGA-BT-A20J-01 2 165947272 165947272 C T SCN3A Nonsense_Mutation p.W1797* 0.10 TCGA-BT-A20J-01 2 166747011 166747011 C G TTC21B Missense_Mutation p.E1081Q 0.38 deleterious(0.04) probably_damaging(0.91) TCGA-BT-A20J-01 2 170359659 170359659 G C BBS5 Missense_Mutation p.D291H 0.31 deleterious(0.02) possibly_damaging(0.683) TCGA-BT-A20J-01 2 170506887 170506887 T C CCDC173 Silent p.E368E 0.11 TCGA-BT-A20J-01 2 179402447 179402447 C T TTN Missense_Mutation p.E33163K 0.21 TCGA-BT-A20J-01 2 179481355 179481355 G A TTN Missense_Mutation p.R16055C 0.21 TCGA-BT-A20J-01 2 179528787 179528787 C A TTN Missense_Mutation p.V12107L 0.16 TCGA-BT-A20J-01 2 183094834 183094834 C T PDE1A Missense_Mutation p.E208K 0.14 deleterious(0.02) possibly_damaging(0.779) TCGA-BT-A20J-01 2 186670996 186670996 G A FSIP2 Missense_Mutation p.E5744K 0.20 benign(0.017) TCGA-BT-A20J-01 2 187455093 187455093 C T ITGAV Missense_Mutation p.R10C 0.19 tolerated(0.13) unknown(0) TCGA-BT-A20J-01 2 187516805 187516805 C G ITGAV Silent p.L498L 0.31 TCGA-BT-A20J-01 2 198498569 198498569 C T RFTN2 Nonsense_Mutation p.W197* 0.10 TCGA-BT-A20J-01 2 201468754 201468754 C T AOX1 Silent p.L201L 0.07 TCGA-BT-A20J-01 2 201526320 201526320 G A AOX1 Missense_Mutation p.E1132K 0.09 tolerated(0.13) benign(0.02) TCGA-BT-A20J-01 2 201721702 201721702 T A CLK1 Missense_Mutation p.H322L 0.07 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 2 203420557 203420557 C T BMPR2 Silent p.F723F 0.11 TCGA-BT-A20J-01 2 209218754 209218754 C T PIKFYVE Missense_Mutation p.H1993Y 0.18 tolerated(0.07) probably_damaging(0.928) TCGA-BT-A20J-01 2 220094995 220094995 G A ANKZF1 Missense_Mutation p.D6N 0.16 tolerated_low_confidence(0.11) benign(0.002) TCGA-BT-A20J-01 2 227924258 227924258 G A COL4A4 Missense_Mutation p.S749L 0.15 possibly_damaging(0.587) TCGA-BT-A20J-01 2 231090498 231090498 C T SP140 5'UTR 0.22 TCGA-BT-A20J-01 2 231407626 231407626 C G SP100 Missense_Mutation p.Q875E 0.11 deleterious(0) benign(0.092) TCGA-BT-A20J-01 2 231407741 231407741 C G SP100 3'UTR 0.17 TCGA-BT-A20J-01 2 234622344 234622344 C G UGT1A5 Missense_Mutation p.S236C 0.19 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 2 234749538 234749538 C T HJURP Missense_Mutation p.D630N 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-BT-A20J-01 2 239184478 239184478 C T PER2 Silent p.L118L 0.15 TCGA-BT-A20J-01 2 24011422 24011422 G C ATAD2B Silent p.L912L 0.08 TCGA-BT-A20J-01 2 241468765 241468765 G T ANKMY1 Silent p.I125I 0.14 TCGA-BT-A20J-01 2 30976031 30976031 G A CAPN13 Silent p.I325I 0.04 TCGA-BT-A20J-01 2 33412110 33412110 C T LTBP1 Silent p.T463T 0.29 TCGA-BT-A20J-01 2 37000939 37000939 T C VIT Missense_Mutation p.W229R 0.53 tolerated(0.58) benign(0.001) TCGA-BT-A20J-01 2 37283642 37283642 G C HEATR5B Silent p.V780V 0.20 TCGA-BT-A20J-01 2 37284473 37284473 G A HEATR5B Missense_Mutation p.S737L 0.09 tolerated(0.49) benign(0.003) TCGA-BT-A20J-01 2 37310575 37310575 C G HEATR5B 5'UTR 0.07 TCGA-BT-A20J-01 2 39234309 39234309 C T SOS1 Missense_Mutation p.E846K 0.28 deleterious(0.01) probably_damaging(0.925) TCGA-BT-A20J-01 2 42996988 42996988 G C HAAO Silent p.L165L 0.18 TCGA-BT-A20J-01 2 47693913 47693913 G A MSH2 Missense_Mutation p.D543N 0.21 deleterious(0) probably_damaging(0.967) TCGA-BT-A20J-01 2 48573510 48573510 G C FOXN2 Missense_Mutation p.D53H 0.15 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 2 54035547 54035547 G A ERLEC1 Missense_Mutation p.D331N 0.19 deleterious(0) probably_damaging(0.994) TCGA-BT-A20J-01 2 68691345 68691345 C G FBXO48 Missense_Mutation p.R155T 0.17 deleterious(0) probably_damaging(0.997) TCGA-BT-A20J-01 2 72968519 72968519 C T EXOC6B Missense_Mutation p.E65K 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-BT-A20J-01 2 88874949 88874949 G A EIF2AK3 Silent p.L684L 0.10 TCGA-BT-A20J-01 2 97276603 97276603 G C KANSL3 Silent p.L393L 0.17 TCGA-BT-A20J-01 2 97483169 97483169 C G CNNM3 Missense_Mutation p.F385L 0.13 deleterious(0) probably_damaging(0.989) TCGA-BT-A20J-01 3 108203941 108203941 C G MYH15 Missense_Mutation p.E391Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20J-01 3 111769523 111769523 G A TMPRSS7 Missense_Mutation p.E240K 0.13 tolerated(0.34) benign(0.096) TCGA-BT-A20J-01 3 112546253 112546253 C T CD200R1L Missense_Mutation p.D131N 0.18 tolerated(0.59) benign(0.005) TCGA-BT-A20J-01 3 112546398 112546398 C T CD200R1L Silent p.K82K 0.15 TCGA-BT-A20J-01 3 113172624 113172624 C T SPICE1 Missense_Mutation p.E611K 0.27 tolerated(0.99) possibly_damaging(0.886) TCGA-BT-A20J-01 3 113528247 113528247 G A ATP6V1A Silent p.Q609Q 0.12 TCGA-BT-A20J-01 3 116163937 116163937 G C LSAMP 5'UTR 0.14 TCGA-BT-A20J-01 3 11831945 11831945 C T TAMM41 3'UTR 0.06 TCGA-BT-A20J-01 3 121206874 121206874 G C POLQ Nonsense_Mutation p.S1635* 0.27 TCGA-BT-A20J-01 3 121411306 121411306 C T GOLGB1 Missense_Mutation p.R2302H 0.12 possibly_damaging(0.742) TCGA-BT-A20J-01 3 121725918 121725918 G A ILDR1 Missense_Mutation p.S50F 0.14 deleterious(0) probably_damaging(0.991) TCGA-BT-A20J-01 3 127831851 127831851 G A RUVBL1 Silent p.L81L 0.09 TCGA-BT-A20J-01 3 131217033 131217033 G A MRPL3 Missense_Mutation p.S153L 0.20 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 3 133494392 133494392 C T TF Silent p.A601A 0.06 TCGA-BT-A20J-01 3 142188970 142188970 G C ATR Missense_Mutation p.L2093V 0.14 tolerated(0.14) probably_damaging(0.997) TCGA-BT-A20J-01 3 147131226 147131226 C T ZIC1 Missense_Mutation p.S411F 0.13 deleterious(0) possibly_damaging(0.758) TCGA-BT-A20J-01 3 151163978 151163978 G C IGSF10 Missense_Mutation p.S1264C 0.17 deleterious(0.01) possibly_damaging(0.701) TCGA-BT-A20J-01 3 151164002 151164002 G A IGSF10 Missense_Mutation p.S1256L 0.16 tolerated(0.16) benign(0.015) TCGA-BT-A20J-01 3 15475961 15475961 C T EAF1 Missense_Mutation p.P148S 0.13 tolerated(0.39) possibly_damaging(0.903) TCGA-BT-A20J-01 3 155232674 155232674 C G PLCH1 Splice_Site p.X479_splice 0.11 TCGA-BT-A20J-01 3 158383171 158383171 G C GFM1 Missense_Mutation p.E476Q 0.20 deleterious(0.01) possibly_damaging(0.831) TCGA-BT-A20J-01 3 158384153 158384153 G T GFM1 Nonsense_Mutation p.E527* 0.17 TCGA-BT-A20J-01 3 158384379 158384379 G A LXN 3'UTR 0.19 TCGA-BT-A20J-01 3 167245664 167245664 C T WDR49 Missense_Mutation p.D498N 0.13 tolerated(0.06) probably_damaging(0.975) TCGA-BT-A20J-01 3 167414891 167414891 G A PDCD10 Silent p.L58L 0.19 TCGA-BT-A20J-01 3 170108952 170108952 G C SKIL Missense_Mutation p.Q600H 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A20J-01 3 183860565 183860565 A C EIF2B5 Splice_Site p.X516_splice 0.32 TCGA-BT-A20J-01 3 184570306 184570306 C G VPS8 Missense_Mutation p.L258V 0.10 tolerated(0.11) benign(0.178) TCGA-BT-A20J-01 3 185191489 185191489 C T MAP3K13 Silent p.L790L 0.25 TCGA-BT-A20J-01 3 186395041 186395041 C T HRG Missense_Mutation p.P316L 0.15 tolerated(0.31) benign(0) TCGA-BT-A20J-01 3 194790491 194790491 C T XXYLT1 Missense_Mutation p.V379I 0.10 tolerated(0.39) benign(0.003) TCGA-BT-A20J-01 3 197593030 197593030 C G LRCH3 Missense_Mutation p.Q605E 0.12 tolerated(0.5) benign(0.008) TCGA-BT-A20J-01 3 3189210 3189210 G A TRNT1 Silent p.V293V 0.34 TCGA-BT-A20J-01 3 42573763 42573763 C T VIPR1 Silent p.I316I 0.36 TCGA-BT-A20J-01 3 46450087 46450087 C G CCRL2 Missense_Mutation p.Q185E 0.13 tolerated(0.12) possibly_damaging(0.763) TCGA-BT-A20J-01 3 49713611 49713611 G A APEH Missense_Mutation p.D189N 0.11 tolerated(0.38) benign(0.006) TCGA-BT-A20J-01 3 49933757 49933757 C T MST1R Silent p.G840G 0.23 TCGA-BT-A20J-01 3 52264889 52264889 C T TWF2 Silent p.Q202Q 0.14 TCGA-BT-A20J-01 3 52325046 52325046 G A GLYCTK Missense_Mutation p.D150N 0.12 tolerated(0.32) benign(0.032) TCGA-BT-A20J-01 3 52523592 52523592 G C NISCH Missense_Mutation p.E1118D 0.12 tolerated(0.29) benign(0.001) TCGA-BT-A20J-01 3 53212459 53212459 C T PRKCD Silent p.I7I 0.13 TCGA-BT-A20J-01 3 73438983 73438983 C T PDZRN3 Missense_Mutation p.G467E 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 4 100479303 100479303 G C TRMT10A Nonsense_Mutation p.S84* 0.13 TCGA-BT-A20J-01 4 102981490 102981490 C G BANK1 Missense_Mutation p.L698V 0.06 tolerated(0.06) probably_damaging(0.996) TCGA-BT-A20J-01 4 104013836 104013836 G A BDH2 Missense_Mutation p.L57F 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-BT-A20J-01 4 106614616 106614616 C G INTS12 Missense_Mutation p.D113H 0.22 deleterious(0) benign(0.054) TCGA-BT-A20J-01 4 110882118 110882118 C T EGF Silent p.L388L 0.18 TCGA-BT-A20J-01 4 113362208 113362208 G A ALPK1 Missense_Mutation p.C1225Y 0.11 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 4 121738027 121738027 G A PRDM5 Nonsense_Mutation p.Q235* 0.15 TCGA-BT-A20J-01 4 134072563 134072563 G A PCDH10 Missense_Mutation p.R423Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 4 1347183 1347183 G A UVSSA Missense_Mutation p.D306N 0.44 tolerated(0.14) benign(0.026) TCGA-BT-A20J-01 4 155507837 155507837 C G FGA Missense_Mutation p.W248C 0.10 deleterious(0) possibly_damaging(0.759) TCGA-BT-A20J-01 4 169208323 169208323 C T DDX60 Missense_Mutation p.M405I 0.12 tolerated(0.17) benign(0.041) TCGA-BT-A20J-01 4 183664474 183664474 G A TENM3 Silent p.A1177A 0.18 TCGA-BT-A20J-01 4 184614842 184614842 G A TRAPPC11 Missense_Mutation p.E780K 0.29 deleterious(0) benign(0.379) TCGA-BT-A20J-01 4 25789920 25789920 C G SEL1L3 Missense_Mutation p.E715Q 0.14 deleterious(0.02) benign(0.443) TCGA-BT-A20J-01 4 38776503 38776503 G C TLR10 Missense_Mutation p.L237V 0.35 tolerated(0.57) benign(0.116) TCGA-BT-A20J-01 4 4864675 4864675 G C MSX1 Missense_Mutation p.K239N 0.21 deleterious(0) probably_damaging(0.966) TCGA-BT-A20J-01 4 54324885 54324885 G A FIP1L1 Missense_Mutation p.R522Q 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-BT-A20J-01 4 72204900 72204900 G A SLC4A4 Intron 0.08 TCGA-BT-A20J-01 4 78527049 78527049 C T CXCL13 Silent p.L10L 0.13 TCGA-BT-A20J-01 4 85662946 85662946 G C WDFY3 Missense_Mutation p.L2068V 0.12 tolerated(1) benign(0.001) TCGA-BT-A20J-01 4 86893235 86893235 C T ARHGAP24 Nonsense_Mutation p.R216* 0.19 TCGA-BT-A20J-01 4 95155124 95155124 G C SMARCAD1 Missense_Mutation p.E130Q 0.14 tolerated_low_confidence(0.21) benign(0.288) TCGA-BT-A20J-01 5 1076837 1076837 G A SLC12A7 Silent p.L574L 0.22 TCGA-BT-A20J-01 5 114951919 114951919 C T TMED7 Missense_Mutation p.R221H 0.31 tolerated(0.23) possibly_damaging(0.475) TCGA-BT-A20J-01 5 140167237 140167237 G A PCDHA1 Silent p.A454A 0.30 TCGA-BT-A20J-01 5 140503600 140503600 G A PCDHB4 Missense_Mutation p.E674K 0.35 deleterious_low_confidence(0.01) benign(0.066) TCGA-BT-A20J-01 5 140574015 140574015 G A PCDHB10 Silent p.L630L 0.16 TCGA-BT-A20J-01 5 140712087 140712087 C T PCDHGA1 Silent p.S612S 0.22 TCGA-BT-A20J-01 5 14472765 14472765 G A TRIO Missense_Mutation p.E1993K 0.18 benign(0.025) TCGA-BT-A20J-01 5 147928298 147928298 G A HTR4 Missense_Mutation p.R96W 0.18 tolerated(0.26) possibly_damaging(0.534) TCGA-BT-A20J-01 5 34913668 34913668 C T RAD1 Missense_Mutation p.E72K 0.28 deleterious(0.04) possibly_damaging(0.797) TCGA-BT-A20J-01 5 35876677 35876677 G C IL7R 3'UTR 0.14 TCGA-BT-A20J-01 5 37371030 37371030 G A NUP155 Missense_Mutation p.A17V 0.16 tolerated_low_confidence(0.31) benign(0.01) TCGA-BT-A20J-01 5 37371140 37371140 G C NUP155 5'UTR 0.24 TCGA-BT-A20J-01 5 38506728 38506728 G A LIFR Missense_Mutation p.P333L 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-BT-A20J-01 5 40681862 40681862 G A PTGER4 Missense_Mutation p.R256H 0.19 deleterious(0) probably_damaging(0.954) TCGA-BT-A20J-01 5 5235258 5235258 G C ADAMTS16 Missense_Mutation p.R661T 0.25 deleterious(0) probably_damaging(0.994) TCGA-BT-A20J-01 5 5476188 5476188 G C KIAA0947 Silent p.L2172L 0.23 TCGA-BT-A20J-01 5 56219227 56219227 A T MIER3 Missense_Mutation p.Y460N 0.34 tolerated(0.05) probably_damaging(0.989) TCGA-BT-A20J-01 5 74675245 74675245 C G COL4A3BP Missense_Mutation p.E729Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 5 79950603 79950603 G A MSH3 Silent p.A19A 0.37 TCGA-BT-A20J-01 5 80024675 80024675 C G MSH3 Missense_Mutation p.Q487E 0.22 tolerated(0.2) benign(0.005) TCGA-BT-A20J-01 5 82832829 82832829 G A VCAN Missense_Mutation p.R1336Q 0.47 tolerated(0.06) possibly_damaging(0.545) TCGA-BT-A20J-01 5 96349455 96349455 C T LNPEP Silent p.I713I 0.14 TCGA-BT-A20J-01 6 144803392 144803392 C T UTRN Silent p.L1185L 0.19 TCGA-BT-A20J-01 6 151742433 151742433 C T RMND1 Silent p.V342V 0.16 TCGA-BT-A20J-01 6 154771348 154771348 C G CNKSR3 Missense_Mutation p.E33Q 0.24 tolerated(0.18) possibly_damaging(0.517) TCGA-BT-A20J-01 6 163899843 163899843 G C QKI Missense_Mutation p.R106T 0.17 deleterious(0) possibly_damaging(0.877) TCGA-BT-A20J-01 6 168464360 168464360 G C FRMD1 Missense_Mutation p.P242R 0.26 deleterious(0) probably_damaging(0.985) TCGA-BT-A20J-01 6 169051384 169051384 G A SMOC2 Missense_Mutation p.E322K 0.37 tolerated(0.06) possibly_damaging(0.835) TCGA-BT-A20J-01 6 26092939 26092939 C T HFE Missense_Mutation p.H215Y 0.14 deleterious(0) possibly_damaging(0.699) TCGA-BT-A20J-01 6 26252142 26252142 G C HIST1H2BH Silent p.S88S 0.05 TCGA-BT-A20J-01 6 27107244 27107244 G C HIST1H4I Missense_Mutation p.E53Q 0.09 deleterious(0.02) possibly_damaging(0.451) TCGA-BT-A20J-01 6 29692165 29692165 G A HLA-F Missense_Mutation p.E184K 0.19 tolerated_low_confidence(0.23) benign(0.081) TCGA-BT-A20J-01 6 30457338 30457338 C G HLA-E Silent p.L10L 0.30 TCGA-BT-A20J-01 6 31498646 31498646 C T DDX39B Missense_Mutation p.E394K 0.19 tolerated(0.14) benign(0.003) TCGA-BT-A20J-01 6 3154736 3154736 C T TUBB2A Missense_Mutation p.M233I 0.29 deleterious_low_confidence(0.05) benign(0.005) TCGA-BT-A20J-01 6 32016366 32016366 C T TNXB 5'Flank 0.15 TCGA-BT-A20J-01 6 33173008 33173008 C G HSD17B8 Missense_Mutation p.S94C 0.10 deleterious(0.02) benign(0.026) TCGA-BT-A20J-01 6 33173950 33173950 G A HSD17B8 Missense_Mutation p.E231K 0.12 tolerated(0.06) benign(0.006) TCGA-BT-A20J-01 6 37328350 37328350 G T RNF8 Missense_Mutation p.K80N 0.27 deleterious(0) possibly_damaging(0.849) TCGA-BT-A20J-01 6 3850759 3850759 C T FAM50B Silent p.I238I 0.33 TCGA-BT-A20J-01 6 4049306 4049306 C G PRPF4B Silent p.L664L 0.19 TCGA-BT-A20J-01 6 41739006 41739006 G C FRS3 Missense_Mutation p.S277C 0.11 tolerated(0.08) possibly_damaging(0.619) TCGA-BT-A20J-01 6 43008354 43008354 C G CUL7 Missense_Mutation p.E1397Q 0.17 tolerated(0.08) probably_damaging(0.931) TCGA-BT-A20J-01 6 46801038 46801038 C T MEP1A Nonsense_Mutation p.R458* 0.33 TCGA-BT-A20J-01 6 47576971 47576971 C G CD2AP Missense_Mutation p.S582C 0.11 deleterious(0.02) benign(0.438) TCGA-BT-A20J-01 6 51524156 51524156 T C PKHD1 Missense_Mutation p.I3590V 0.08 tolerated(0.7) benign(0.007) TCGA-BT-A20J-01 6 51524157 51524157 C A PKHD1 Missense_Mutation p.Q3589H 0.08 tolerated(0.06) benign(0.027) TCGA-BT-A20J-01 6 52268302 52268302 C T PAQR8 Silent p.A97A 0.13 TCGA-BT-A20J-01 6 52701092 52701092 G T GSTA5 Missense_Mutation p.L72I 0.22 deleterious(0.03) possibly_damaging(0.5) TCGA-BT-A20J-01 6 52850346 52850346 C T GSTA4 Missense_Mutation p.E59K 0.16 deleterious(0.01) probably_damaging(0.94) TCGA-BT-A20J-01 6 71566608 71566608 C T SMAP1 Missense_Mutation p.S279F 0.07 deleterious(0) possibly_damaging(0.839) TCGA-BT-A20J-01 6 7581110 7581110 C G DSP Missense_Mutation p.L1563V 0.38 benign(0.001) TCGA-BT-A20J-01 6 82459984 82459984 C T FAM46A Missense_Mutation p.E253K 0.21 tolerated(0.13) benign(0.097) TCGA-BT-A20J-01 6 86181054 86181054 C T NT5E Missense_Mutation p.S221L 0.16 deleterious(0.04) probably_damaging(0.969) TCGA-BT-A20J-01 6 88362934 88362934 G C ORC3 Missense_Mutation p.E495Q 0.09 tolerated(0.2) benign(0.034) TCGA-BT-A20J-01 6 90718326 90718326 C T BACH2 Missense_Mutation p.E80K 0.09 deleterious(0.01) benign(0.259) TCGA-BT-A20J-01 7 106509785 106509785 T C PIK3CG Silent p.F593F 0.29 TCGA-BT-A20J-01 7 114304340 114304340 G T FOXP2 Nonsense_Mutation p.E643* 0.32 TCGA-BT-A20J-01 7 116409824 116409824 G C MET Missense_Mutation p.L921F 0.16 tolerated(0.11) probably_damaging(0.999) TCGA-BT-A20J-01 7 116436028 116436028 C T MET Silent p.F1359F 0.18 TCGA-BT-A20J-01 7 138863036 138863036 C G TTC26 Silent p.L382L 0.15 TCGA-BT-A20J-01 7 142481238 142481238 G C PRSS3P2 RNA 0.15 TCGA-BT-A20J-01 7 142481259 142481259 C T PRSS3P2 RNA 0.39 TCGA-BT-A20J-01 7 151927069 151927069 C T KMT2C Missense_Mutation p.G972E 0.05 probably_damaging(1) TCGA-BT-A20J-01 7 25264716 25264716 G C NPVF 3'UTR 0.33 TCGA-BT-A20J-01 7 7628157 7628157 G C MIOS Missense_Mutation p.R616T 0.27 deleterious(0) probably_damaging(0.996) TCGA-BT-A20J-01 7 82072745 82072745 G C CACNA2D1 Missense_Mutation p.L11V 0.12 tolerated(0.11) probably_damaging(0.953) TCGA-BT-A20J-01 7 99707583 99707583 C G TAF6 Missense_Mutation p.Q461H 0.11 deleterious(0.01) possibly_damaging(0.804) TCGA-BT-A20J-01 8 104240391 104240391 C T BAALC 3'UTR 0.23 TCGA-BT-A20J-01 8 106814193 106814193 C G ZFPM2 Missense_Mutation p.S628C 0.33 deleterious(0) probably_damaging(0.979) TCGA-BT-A20J-01 8 110476718 110476718 C T PKHD1L1 Silent p.L2553L 0.11 TCGA-BT-A20J-01 8 110587905 110587905 C G SYBU Missense_Mutation p.D408H 0.11 deleterious(0.03) possibly_damaging(0.669) TCGA-BT-A20J-01 8 119122991 119122991 G A EXT1 Missense_Mutation p.R99C 0.15 deleterious(0.01) probably_damaging(1) TCGA-BT-A20J-01 8 126448548 126448548 C G TRIB1 Silent p.L318L 0.07 TCGA-BT-A20J-01 8 128750661 128750661 G A MYC Silent p.K66K 0.10 TCGA-BT-A20J-01 8 141774419 141774419 G T PTK2 Intron 0.15 TCGA-BT-A20J-01 8 141856744 141856744 G C PTK2 Missense_Mutation p.Q162E 0.07 tolerated(0.26) benign(0.049) TCGA-BT-A20J-01 8 144943483 144943483 C G EPPK1 Silent p.L1313L 0.22 TCGA-BT-A20J-01 8 145512853 145512853 C T BOP1 Missense_Mutation p.D78N 0.15 tolerated(0.52) possibly_damaging(0.555) TCGA-BT-A20J-01 8 18622977 18622977 G A PSD3 Silent p.F718F 0.17 TCGA-BT-A20J-01 8 21926966 21926966 C T DMTN Nonsense_Mutation p.Q111* 0.34 TCGA-BT-A20J-01 8 22058657 22058657 C T BMP1 Intron 0.17 TCGA-BT-A20J-01 8 23112846 23112846 C T CHMP7 Silent p.L186L 0.45 TCGA-BT-A20J-01 8 59409297 59409297 G C CYP7A1 Missense_Mutation p.S258R 0.06 tolerated(0.78) benign(0.008) TCGA-BT-A20J-01 8 66619459 66619459 G A MTFR1 Silent p.E244E 0.06 TCGA-BT-A20J-01 8 75941732 75941732 G C CRISPLD1 Missense_Mutation p.Q477H 0.14 deleterious(0.01) probably_damaging(0.93) TCGA-BT-A20J-01 8 87076269 87076269 G C PSKH2 Missense_Mutation p.F259L 0.13 tolerated(0.29) benign(0.004) TCGA-BT-A20J-01 9 100079488 100079488 G T CCDC180 Nonsense_Mutation p.E357* 0.12 TCGA-BT-A20J-01 9 115805729 115805729 G C ZFP37 Nonsense_Mutation p.S390* 0.16 TCGA-BT-A20J-01 9 130111209 130111209 G A GARNL3 Missense_Mutation p.E480K 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A20J-01 9 130536540 130536540 G A SH2D3C Missense_Mutation p.R82C 0.36 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 9 134003045 134003045 G T NUP214 Missense_Mutation p.Q60H 0.18 unknown(0) TCGA-BT-A20J-01 9 139371368 139371368 C A SEC16A Nonsense_Mutation p.E234* 0.30 TCGA-BT-A20J-01 9 139743859 139743859 G C PHPT1 5'UTR 0.38 TCGA-BT-A20J-01 9 140477494 140477494 C T ZMYND19 Missense_Mutation p.E161K 0.18 deleterious(0.04) benign(0.211) TCGA-BT-A20J-01 9 19376290 19376290 C G RPS6 3'UTR 0.42 TCGA-BT-A20J-01 9 19376351 19376351 C G RPS6 Missense_Mutation p.K230N 0.31 deleterious(0) unknown(0) TCGA-BT-A20J-01 9 23731071 23731071 C G ELAVL2 Missense_Mutation p.E94D 0.23 tolerated(0.19) benign(0.007) TCGA-BT-A20J-01 9 32543021 32543021 G A TOPORS Missense_Mutation p.S501F 0.43 deleterious(0) probably_damaging(0.998) TCGA-BT-A20J-01 9 32544192 32544192 C G TOPORS Missense_Mutation p.D111H 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-BT-A20J-01 9 37429803 37429803 G C GRHPR Missense_Mutation p.E190Q 0.21 tolerated(0.49) benign(0.002) TCGA-BT-A20J-01 9 422095 422095 G C DOCK8 Missense_Mutation p.E1401Q 0.07 deleterious(0.01) possibly_damaging(0.864) TCGA-BT-A20J-01 9 74319522 74319522 G C TMEM2 Silent p.V1061V 0.41 TCGA-BT-A20J-01 9 84532425 84532425 G A SPATA31D5P RNA 0.11 TCGA-BT-A20J-01 9 94809522 94809522 G T SPTLC1 Nonsense_Mutation p.S338* 0.17 TCGA-BT-A20J-01 X 106083998 106083998 G C TBC1D8B Missense_Mutation p.D535H 0.18 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 X 15349792 15349792 G C PIGA Silent p.L87L 0.50 TCGA-BT-A20J-01 X 15548141 15548141 C G BMX Silent p.L310L 0.31 TCGA-BT-A20J-01 X 21675005 21675005 G A KLHL34 Missense_Mutation p.P301L 0.50 tolerated(0.05) benign(0.002) TCGA-BT-A20J-01 X 24906201 24906201 C G POLA1 Missense_Mutation p.L1370V 0.40 tolerated(0.68) benign(0.015) TCGA-BT-A20J-01 X 29935671 29935671 T C IL1RAPL1 Missense_Mutation p.I290T 0.54 tolerated(0.5) probably_damaging(0.994) TCGA-BT-A20J-01 X 47069375 47069375 C T UBA1 Silent p.P684P 0.12 TCGA-BT-A20J-01 X 48887326 48887326 C T TFE3 3'UTR 0.53 TCGA-BT-A20J-01 X 49030735 49030735 C T PLP2 Silent p.F133F 0.50 TCGA-BT-A20J-01 X 49030736 49030736 C T PLP2 Missense_Mutation p.P134S 0.51 tolerated(0.06) probably_damaging(1) TCGA-BT-A20J-01 X 69282886 69282886 G C OTUD6A Missense_Mutation p.R171P 0.36 deleterious(0) probably_damaging(1) TCGA-BT-A20J-01 X 77245376 77245376 G C ATP7A Missense_Mutation p.E420Q 0.08 tolerated(0.45) probably_damaging(0.954) TCGA-BT-A20J-01 X 77381382 77381382 C T PGK1 3'UTR 0.59 TCGA-BT-A20N-01 10 120445554 120445554 G T CACUL1 3'UTR 0.16 TCGA-BT-A20N-01 10 127737960 127737960 G C ADAM12 Silent p.T596T 0.14 TCGA-BT-A20N-01 10 128018989 128018989 C T ADAM12 Missense_Mutation p.D60N 0.07 tolerated(0.55) benign(0.002) TCGA-BT-A20N-01 10 134647018 134647018 G C TTC40 Missense_Mutation p.P2321A 0.47 tolerated(0.12) benign(0.015) TCGA-BT-A20N-01 10 134647019 134647019 C A TTC40 Missense_Mutation p.Q2320H 0.48 tolerated(0.13) benign(0.003) TCGA-BT-A20N-01 10 26455034 26455034 G A MYO3A Missense_Mutation p.R1013H 0.04 deleterious(0.04) benign(0.139) TCGA-BT-A20N-01 10 28824669 28824669 T C WAC Missense_Mutation p.V86A 0.36 tolerated(0.96) benign(0.058) TCGA-BT-A20N-01 10 7608067 7608067 G T ITIH5 Missense_Mutation p.P818H 0.32 tolerated(0.1) probably_damaging(0.985) TCGA-BT-A20N-01 10 7608068 7608068 G T ITIH5 Missense_Mutation p.P818T 0.32 tolerated(0.11) possibly_damaging(0.89) TCGA-BT-A20N-01 10 79576344 79576344 G T DLG5 Silent p.V1330V 0.06 TCGA-BT-A20N-01 10 82043718 82043718 C T MAT1A Silent p.V82V 0.15 TCGA-BT-A20N-01 10 90362330 90362330 C G LIPJ Intron 0.15 TCGA-BT-A20N-01 10 97200912 97200912 G C SORBS1 5'UTR 0.08 TCGA-BT-A20N-01 10 99696115 99696115 C G CRTAC1 Missense_Mutation p.G78A 0.22 deleterious(0.03) probably_damaging(0.951) TCGA-BT-A20N-01 11 105880645 105880645 G C MSANTD4 Missense_Mutation p.L219V 0.04 tolerated(0.28) probably_damaging(0.968) TCGA-BT-A20N-01 11 111784284 111784284 G T HSPB2 Missense_Mutation p.G72C 0.15 deleterious(0.01) benign(0.065) TCGA-BT-A20N-01 11 117073833 117073833 T C TAGLN Missense_Mutation p.I35T 0.56 tolerated(0.56) benign(0.009) TCGA-BT-A20N-01 11 118374909 118374909 G C KMT2A Missense_Mutation p.E2768Q 0.07 benign(0.438) TCGA-BT-A20N-01 11 119003661 119003661 C T HINFP Silent p.F321F 0.61 TCGA-BT-A20N-01 11 124413346 124413346 C G OR8B12 Missense_Mutation p.D69H 0.57 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-BT-A20N-01 11 125298937 125298937 G T PKNOX2 Missense_Mutation p.R322S 0.44 deleterious(0) probably_damaging(0.99) TCGA-BT-A20N-01 11 128844494 128844494 A C ARHGAP32 Silent p.S852S 0.48 TCGA-BT-A20N-01 11 132290160 132290160 T A OPCML Missense_Mutation p.N322I 0.11 tolerated(0.08) benign(0.395) TCGA-BT-A20N-01 11 19970352 19970352 C T NAV2 Missense_Mutation p.R814W 0.19 deleterious(0) probably_damaging(0.998) TCGA-BT-A20N-01 11 33106597 33106597 C T CSTF3 3'UTR 0.08 TCGA-BT-A20N-01 11 408113 408113 G C SIGIRR Missense_Mutation p.I100M 0.37 deleterious(0.04) benign(0.066) TCGA-BT-A20N-01 11 43333648 43333648 C T API5 5'UTR 0.50 TCGA-BT-A20N-01 11 6023399 6023399 A C OR56A4 Missense_Mutation p.V327G 0.25 deleterious(0) possibly_damaging(0.697) TCGA-BT-A20N-01 11 6129720 6129720 G T OR56B4 Nonsense_Mutation p.E238* 0.47 TCGA-BT-A20N-01 11 62285078 62285078 G C AHNAK Missense_Mutation p.S5604C 0.29 probably_damaging(0.998) TCGA-BT-A20N-01 11 6244846 6244846 G A FAM160A2 Silent p.F257F 0.17 TCGA-BT-A20N-01 11 64124602 64124602 C G CCDC88B 3'UTR 0.48 TCGA-BT-A20N-01 11 65265440 65265440 C G MALAT1 RNA 0.35 TCGA-BT-A20N-01 11 6649910 6649910 C T DCHS1 Missense_Mutation p.M1771I 0.40 tolerated(0.34) benign(0) TCGA-BT-A20N-01 11 68370851 68370851 G T PPP6R3 Nonsense_Mutation p.E781* 0.39 TCGA-BT-A20N-01 11 73620513 73620513 G A PAAF1 Missense_Mutation p.R201Q 0.14 deleterious(0.01) possibly_damaging(0.904) TCGA-BT-A20N-01 11 94602363 94602363 G T AMOTL1 Missense_Mutation p.G830V 0.16 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 12 11035011 11035011 T A PRH1 Silent p.P108P 0.19 TCGA-BT-A20N-01 12 112174762 112174762 C T ACAD10 Silent p.F587F 0.50 TCGA-BT-A20N-01 12 112605677 112605677 G A HECTD4 Nonsense_Mutation p.Q3939* 0.19 TCGA-BT-A20N-01 12 117627036 117627036 T A FBXO21 Missense_Mutation p.E124V 0.06 deleterious(0) possibly_damaging(0.56) TCGA-BT-A20N-01 12 117627039 117627039 G A FBXO21 Missense_Mutation p.S123L 0.08 deleterious(0.02) benign(0.022) TCGA-BT-A20N-01 12 120568496 120568496 G C GCN1L1 Missense_Mutation p.T2542R 0.29 benign(0.051) TCGA-BT-A20N-01 12 120611536 120611536 G C GCN1L1 Missense_Mutation p.F429L 0.09 benign(0.011) TCGA-BT-A20N-01 12 120942706 120942706 G C COQ5 Silent p.L254L 0.16 TCGA-BT-A20N-01 12 124238964 124238964 C T ATP6V0A2 Intron 0.37 TCGA-BT-A20N-01 12 130648250 130648250 C G FZD10 Missense_Mutation p.R255G 0.42 deleterious(0) probably_damaging(0.998) TCGA-BT-A20N-01 12 133732756 133732756 C T ZNF10 Silent p.L308L 0.38 TCGA-BT-A20N-01 12 14976352 14976352 C G C12orf60 Silent p.T161T 0.34 TCGA-BT-A20N-01 12 1943830 1943830 G A LRTM2 Silent p.L352L 0.09 TCGA-BT-A20N-01 12 32760950 32760950 G T FGD4 Silent p.R351R 0.27 TCGA-BT-A20N-01 12 416853 416853 G A KDM5A Missense_Mutation p.L1233F 0.28 deleterious(0) probably_damaging(0.961) TCGA-BT-A20N-01 12 49444319 49444319 C A KMT2D Nonsense_Mutation p.E1018* 0.40 TCGA-BT-A20N-01 12 49491848 49491848 G A LMBR1L Silent p.F427F 0.20 TCGA-BT-A20N-01 12 51138369 51138369 G T DIP2B Splice_Site p.X1493_splice 0.50 TCGA-BT-A20N-01 12 51461550 51461550 G C CSRNP2 Missense_Mutation p.A205G 0.07 deleterious(0.02) probably_damaging(0.944) TCGA-BT-A20N-01 12 52281949 52281949 G A ANKRD33 5'UTR 0.12 TCGA-BT-A20N-01 12 53170846 53170846 C T KRT76 Missense_Mutation p.R77Q 0.09 tolerated(0.16) unknown(0) TCGA-BT-A20N-01 12 53228038 53228038 A G KRT79 Missense_Mutation p.S3P 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.69) TCGA-BT-A20N-01 12 57423361 57423361 C T MYO1A Missense_Mutation p.R912Q 0.09 tolerated(0.09) benign(0.313) TCGA-BT-A20N-01 12 59274438 59274438 C T LRIG3 Missense_Mutation p.E576K 0.20 deleterious(0.01) possibly_damaging(0.898) TCGA-BT-A20N-01 12 8234864 8234864 A T NECAP1 5'UTR 0.28 TCGA-BT-A20N-01 12 82793112 82793112 C T METTL25 Missense_Mutation p.S357L 0.42 tolerated(0.22) benign(0.036) TCGA-BT-A20N-01 12 88420329 88420329 G T C12orf50 Silent p.I23I 0.16 TCGA-BT-A20N-01 12 936296 936296 C G WNK1 Missense_Mutation p.R341G 0.07 deleterious(0) unknown(0) TCGA-BT-A20N-01 12 96266046 96266046 C G CCDC38 Missense_Mutation p.E491Q 0.14 deleterious(0) probably_damaging(0.973) TCGA-BT-A20N-01 13 23930096 23930096 G A SACS Nonsense_Mutation p.Q219* 0.50 TCGA-BT-A20N-01 13 42259229 42259229 C A VWA8 Missense_Mutation p.R1427S 0.50 deleterious(0) benign(0.434) TCGA-BT-A20N-01 14 100375681 100375681 G C EML1 Splice_Site p.X388_splice 0.06 TCGA-BT-A20N-01 14 100792529 100792529 C A SLC25A47 Silent p.I36I 0.48 TCGA-BT-A20N-01 14 101434473 101434473 G A SNORD114-11 RNA 0.25 TCGA-BT-A20N-01 14 102904406 102904406 C A TECPR2 Silent p.L814L 0.06 TCGA-BT-A20N-01 14 29237689 29237689 C T FOXG1 Missense_Mutation p.L402F 0.13 deleterious(0) benign(0.076) TCGA-BT-A20N-01 14 30066873 30066873 T C PRKD1 Missense_Mutation p.E753G 0.23 deleterious(0) probably_damaging(0.989) TCGA-BT-A20N-01 14 34269591 34269591 C G NPAS3 Missense_Mutation p.S693C 0.31 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-BT-A20N-01 14 51204963 51204963 T A NIN Missense_Mutation p.K1890N 0.30 deleterious(0.03) possibly_damaging(0.882) TCGA-BT-A20N-01 14 52167842 52167842 G A FRMD6 Missense_Mutation p.E87K 0.21 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 14 71540497 71540497 C G PCNX Silent p.L1696L 0.25 TCGA-BT-A20N-01 14 78184384 78184384 C T SNW1 3'UTR 0.11 TCGA-BT-A20N-01 14 78184840 78184840 C T SNW1 Missense_Mutation p.E428K 0.10 deleterious(0) benign(0.423) TCGA-BT-A20N-01 14 81946033 81946033 C A SEL1L Missense_Mutation p.D700Y 0.09 deleterious(0) possibly_damaging(0.886) TCGA-BT-A20N-01 14 88401080 88401080 C T GALC Missense_Mutation p.R685H 0.07 tolerated_low_confidence(0.51) benign(0) TCGA-BT-A20N-01 14 93944052 93944052 A G UNC79 Silent p.T22T 0.31 TCGA-BT-A20N-01 14 94391664 94391664 C AA FAM181A Frame_Shift_Ins p.A16Efs*53 0.26 TCGA-BT-A20N-01 15 41795849 41795849 A C LTK 3'UTR 0.40 TCGA-BT-A20N-01 15 42041126 42041126 G T MGA Splice_Site p.X1835_splice 0.60 TCGA-BT-A20N-01 15 51773566 51773566 T C DMXL2 Missense_Mutation p.K1913E 0.59 tolerated(0.16) benign(0.127) TCGA-BT-A20N-01 15 55652875 55652876 - T CCPG1 Frame_Shift_Ins p.H366Tfs*5 0.19 TCGA-BT-A20N-01 15 66048786 66048786 C T DENND4A Translation_Start_Site p.M1? 0.64 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 15 75305046 75305046 C G SCAMP5 Silent p.P12P 0.67 TCGA-BT-A20N-01 15 75305073 75305073 C T SCAMP5 Silent p.F21F 0.55 TCGA-BT-A20N-01 15 78758753 78758753 G T IREB2 Missense_Mutation p.G184V 0.16 tolerated(0.14) benign(0.063) TCGA-BT-A20N-01 15 81274291 81274291 C G MESDC2 Missense_Mutation p.R149T 0.12 tolerated(0.05) probably_damaging(0.969) TCGA-BT-A20N-01 15 84694106 84694106 G C ADAMTSL3 Missense_Mutation p.R1525T 0.11 tolerated(0.42) benign(0.012) TCGA-BT-A20N-01 15 90020842 90020842 T A RHCG Missense_Mutation p.I340F 0.63 deleterious(0) probably_damaging(0.978) TCGA-BT-A20N-01 16 11362858 11362858 A T TNP2 Missense_Mutation p.S88T 0.60 tolerated(0.1) benign(0.418) TCGA-BT-A20N-01 16 19020681 19020681 C A TMC7 Silent p.L85L 0.68 TCGA-BT-A20N-01 16 2011251 2011251 C T NDUFB10 Silent p.I76I 0.59 TCGA-BT-A20N-01 16 20748467 20748467 T C THUMPD1 Missense_Mutation p.E266G 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-BT-A20N-01 16 3019837 3019837 G C PAQR4 Silent p.T54T 0.48 TCGA-BT-A20N-01 16 30768579 30768579 C G PHKG2 3'UTR 0.37 TCGA-BT-A20N-01 16 310048 310048 G C ITFG3 Missense_Mutation p.D156H 0.59 deleterious(0) probably_damaging(0.973) TCGA-BT-A20N-01 16 31429662 31429662 C T ITGAD Missense_Mutation p.T886I 0.06 tolerated(0.17) benign(0.079) TCGA-BT-A20N-01 16 67985834 67985834 A G SLC12A4 Missense_Mutation p.F344L 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-BT-A20N-01 16 69147356 69147356 G C HAS3 Missense_Mutation p.D217H 0.32 deleterious(0) probably_damaging(0.997) TCGA-BT-A20N-01 16 70563070 70563070 C T SF3B3 Missense_Mutation p.A122V 0.05 deleterious(0.02) possibly_damaging(0.654) TCGA-BT-A20N-01 16 735419 735419 G C WDR24 Silent p.V619V 0.10 TCGA-BT-A20N-01 16 77910312 77910312 G T VAT1L Silent p.G256G 0.06 TCGA-BT-A20N-01 16 81095726 81095726 C A C16orf46 Missense_Mutation p.R76S 0.09 tolerated(0.27) benign(0.006) TCGA-BT-A20N-01 16 85691124 85691124 C T GSE1 Silent p.F518F 0.39 TCGA-BT-A20N-01 17 10248889 10248889 C A MYH13 Missense_Mutation p.K436N 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20N-01 17 10309504 10309504 G C MYH8 Intron 0.50 TCGA-BT-A20N-01 17 19845219 19845219 C T AKAP10 Silent p.R327R 0.13 TCGA-BT-A20N-01 17 26106004 26106004 G T NOS2 Silent p.G361G 0.43 TCGA-BT-A20N-01 17 28380773 28380773 G C EFCAB5 Missense_Mutation p.E601Q 0.10 tolerated(0.13) benign(0.037) TCGA-BT-A20N-01 17 34071981 34071981 C T GAS2L2 Silent p.E845E 0.16 TCGA-BT-A20N-01 17 48761083 48761083 G C ABCC3 Missense_Mutation p.R1307T 0.26 deleterious(0.01) benign(0.141) TCGA-BT-A20N-01 17 49357465 49357465 A C UTP18 Missense_Mutation p.K371T 0.37 deleterious(0) benign(0.384) TCGA-BT-A20N-01 17 61566424 61566424 C T ACE Missense_Mutation p.R858W 0.07 deleterious(0) probably_damaging(0.997) TCGA-BT-A20N-01 17 68128659 68128659 C A KCNJ16 Missense_Mutation p.S144Y 0.34 tolerated(0.16) benign(0.007) TCGA-BT-A20N-01 17 72480186 72480186 C T CD300A Missense_Mutation p.S274F 0.30 deleterious(0) probably_damaging(0.987) TCGA-BT-A20N-01 17 73489627 73489627 A G KIAA0195 Silent p.T714T 0.35 TCGA-BT-A20N-01 17 7577107 7577107 A T TP53 Nonsense_Mutation p.C277* 0.55 TCGA-BT-A20N-01 17 79975246 79975246 C T ASPSCR1 3'UTR 0.19 TCGA-BT-A20N-01 17 80426772 80426772 G C NARF Missense_Mutation p.G129R 0.06 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 18 21474922 21474922 A T LAMA3 Missense_Mutation p.E1838V 0.10 benign(0.104) TCGA-BT-A20N-01 18 2595619 2595619 C T NDC80 Missense_Mutation p.A407V 0.28 tolerated(0.1) benign(0.003) TCGA-BT-A20N-01 19 11624758 11624758 G C ECSIT Missense_Mutation p.D125E 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-BT-A20N-01 19 12430206 12430206 T C ZNF563 Silent p.L211L 0.10 TCGA-BT-A20N-01 19 14938677 14938677 A G OR7A5 Missense_Mutation p.I126T 0.37 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-BT-A20N-01 19 16060285 16060285 G A OR10H4 Missense_Mutation p.M156I 0.15 tolerated(0.87) benign(0.02) TCGA-BT-A20N-01 19 2851495 2851495 T A ZNF555 Missense_Mutation p.S54T 0.06 tolerated(0.24) possibly_damaging(0.629) TCGA-BT-A20N-01 19 35757739 35757739 A G LSR Missense_Mutation p.E386G 0.54 tolerated(0.23) possibly_damaging(0.524) TCGA-BT-A20N-01 19 3612107 3612107 C A CACTIN Missense_Mutation p.E697D 0.08 tolerated(0.3) probably_damaging(0.996) TCGA-BT-A20N-01 19 36207735 36207735 T C ZBTB32 3'UTR 0.22 TCGA-BT-A20N-01 19 41383813 41383813 A C CYP2A7 Missense_Mutation p.V306G 0.16 deleterious(0.02) probably_damaging(1) TCGA-BT-A20N-01 19 49100124 49100124 G A SULT2B1 Silent p.T258T 0.36 TCGA-BT-A20N-01 19 49253764 49253764 C G FUT1 Missense_Mutation p.V259L 0.04 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A20N-01 19 49348658 49348658 C T PLEKHA4 Missense_Mutation p.R571H 0.79 tolerated(0.33) benign(0.004) TCGA-BT-A20N-01 19 50060221 50060221 G A NOSIP Missense_Mutation p.P150S 0.33 tolerated(0.78) benign(0.001) TCGA-BT-A20N-01 19 51274695 51274695 C T GPR32 Silent p.L280L 0.75 TCGA-BT-A20N-01 19 54561828 54561828 G A VSTM1 Silent p.P29P 0.12 TCGA-BT-A20N-01 19 56181003 56181003 A G U2AF2 Missense_Mutation p.K413R 0.64 tolerated(0.7) benign(0.003) TCGA-BT-A20N-01 19 56369479 56369479 G C NLRP4 Missense_Mutation p.L240F 0.29 tolerated(0.08) possibly_damaging(0.687) TCGA-BT-A20N-01 19 57286539 57286539 G C ZIM2 Silent p.L367L 0.06 TCGA-BT-A20N-01 19 58438177 58438177 C G ZNF418 Missense_Mutation p.E458Q 0.68 deleterious(0.05) benign(0.017) TCGA-BT-A20N-01 1 110050899 110050899 G C AMIGO1 Missense_Mutation p.I212M 0.66 tolerated(0.24) benign(0.039) TCGA-BT-A20N-01 1 11102931 11102931 C T MASP2 Splice_Site p.X297_splice 0.21 TCGA-BT-A20N-01 1 113161719 113161719 C A ST7L Missense_Mutation p.G6V 0.60 tolerated_low_confidence(0.21) benign(0.01) TCGA-BT-A20N-01 1 113161720 113161720 C G ST7L Missense_Mutation p.G6R 0.60 tolerated_low_confidence(0.14) benign(0.151) TCGA-BT-A20N-01 1 12819302 12819302 C G C1orf158 Missense_Mutation p.I95M 0.23 deleterious(0) probably_damaging(0.98) TCGA-BT-A20N-01 1 12820737 12820737 C G C1orf158 Silent p.L146L 0.16 TCGA-BT-A20N-01 1 13448450 13448450 G C PRAMEF13 Missense_Mutation p.A342G 0.16 tolerated(0.12) benign(0.056) TCGA-BT-A20N-01 1 149903256 149903256 C T MTMR11 Missense_Mutation p.E396K 0.31 deleterious(0.04) possibly_damaging(0.502) TCGA-BT-A20N-01 1 152081550 152081550 C G TCHH Missense_Mutation p.Q1381H 0.08 unknown(0) TCGA-BT-A20N-01 1 152193791 152193791 G T HRNR Missense_Mutation p.T105N 0.07 benign(0.014) TCGA-BT-A20N-01 1 152285219 152285219 G C FLG Missense_Mutation p.Q715E 0.59 benign(0.313) TCGA-BT-A20N-01 1 152285220 152285220 G T FLG Silent p.L714L 0.59 TCGA-BT-A20N-01 1 152327473 152327473 C T FLG2 Missense_Mutation p.S930N 0.07 unknown(0) TCGA-BT-A20N-01 1 152777745 152777745 A T LCE1C Silent p.S70S 0.07 TCGA-BT-A20N-01 1 154018563 154018563 T G NUP210L Silent p.L1226L 0.04 TCGA-BT-A20N-01 1 154130139 154130139 G C NUP210L 5'Flank 0.07 TCGA-BT-A20N-01 1 154184644 154184644 C G C1orf43 Intron 0.10 TCGA-BT-A20N-01 1 154542804 154542804 C G CHRNB2 Missense_Mutation p.S109C 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A20N-01 1 154544007 154544007 C G CHRNB2 Missense_Mutation p.F236L 0.07 deleterious(0) probably_damaging(0.997) TCGA-BT-A20N-01 1 154544202 154544202 C T CHRNB2 Silent p.L301L 0.07 TCGA-BT-A20N-01 1 155207267 155207267 C A GBA Silent p.L288L 0.55 TCGA-BT-A20N-01 1 155209446 155209446 C A GBA Missense_Mutation p.A139S 0.26 deleterious(0.03) benign(0.227) TCGA-BT-A20N-01 1 156823630 156823630 A G INSRR Missense_Mutation p.L184P 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-BT-A20N-01 1 156845891 156845891 C A NTRK1 Silent p.R507R 0.08 TCGA-BT-A20N-01 1 156845892 156845892 C T NTRK1 Missense_Mutation p.R508W 0.08 deleterious(0) possibly_damaging(0.77) TCGA-BT-A20N-01 1 157805906 157805906 C T CD5L Missense_Mutation p.R32H 0.07 tolerated(0.1) benign(0.14) TCGA-BT-A20N-01 1 158517676 158517676 G C OR6Y1 Missense_Mutation p.L74V 0.07 deleterious(0) probably_damaging(0.998) TCGA-BT-A20N-01 1 159273848 159273848 C T FCER1A Silent p.S69S 0.65 TCGA-BT-A20N-01 1 159854250 159854250 T A CCDC19 Missense_Mutation p.E291D 0.08 tolerated(0.09) benign(0.116) TCGA-BT-A20N-01 1 159897153 159897153 T C IGSF9 Silent p.E1174E 0.58 TCGA-BT-A20N-01 1 16372138 16372138 G C CLCNKB Silent p.L62L 0.27 TCGA-BT-A20N-01 1 16895671 16895671 C T NBPF1 Silent p.S837S 0.12 TCGA-BT-A20N-01 1 176740114 176740114 T A PAPPA2 Missense_Mutation p.W1505R 0.06 tolerated(0.37) probably_damaging(0.999) TCGA-BT-A20N-01 1 179051393 179051393 G A TOR3A Missense_Mutation p.G44S 0.33 tolerated_low_confidence(0.43) benign(0.01) TCGA-BT-A20N-01 1 180012207 180012207 G T CEP350 Missense_Mutation p.R1460I 0.04 probably_damaging(0.995) TCGA-BT-A20N-01 1 181058781 181058781 A C IER5 Missense_Mutation p.Q248P 0.14 deleterious(0.03) benign(0.036) TCGA-BT-A20N-01 1 186023082 186023082 G - HMCN1 Frame_Shift_Del p.T2277Lfs*16 0.11 TCGA-BT-A20N-01 1 192127861 192127861 G A RGS18 Missense_Mutation p.E32K 0.05 tolerated(0.06) benign(0.11) TCGA-BT-A20N-01 1 19491386 19491386 G C UBR4 Missense_Mutation p.T1473R 0.05 benign(0.003) TCGA-BT-A20N-01 1 197073873 197073873 G A ASPM Missense_Mutation p.A1503V 0.12 tolerated(0.08) probably_damaging(0.919) TCGA-BT-A20N-01 1 198719627 198719627 T A PTPRC Missense_Mutation p.W1027R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 1 200017817 200017817 G A NR5A2 Silent p.Q327Q 0.15 TCGA-BT-A20N-01 1 205272802 205272802 C A NUAK2 Missense_Mutation p.D555Y 0.14 deleterious(0) probably_damaging(0.929) TCGA-BT-A20N-01 1 212798782 212798782 C A FAM71A Missense_Mutation p.P188Q 0.13 tolerated(0.51) probably_damaging(0.99) TCGA-BT-A20N-01 1 221879668 221879668 C A DUSP10 Nonsense_Mutation p.E318* 0.03 TCGA-BT-A20N-01 1 228471295 228471295 G A OBSCN Silent p.A3372A 0.07 TCGA-BT-A20N-01 1 23236885 23236885 C G EPHB2 Missense_Mutation p.A839G 0.06 deleterious(0.01) benign(0.312) TCGA-BT-A20N-01 1 24397687 24397687 G C MYOM3 Missense_Mutation p.L1024V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20N-01 1 25891685 25891685 G A LDLRAP1 Missense_Mutation p.E257K 0.49 deleterious(0.04) possibly_damaging(0.603) TCGA-BT-A20N-01 1 32688180 32688180 G C EIF3I Missense_Mutation p.Q15H 0.24 deleterious(0) possibly_damaging(0.724) TCGA-BT-A20N-01 1 3328010 3328010 G A PRDM16 Missense_Mutation p.A417T 0.22 deleterious(0) probably_damaging(0.986) TCGA-BT-A20N-01 1 35370070 35370070 C G DLGAP3 Silent p.S305S 0.42 TCGA-BT-A20N-01 1 43774766 43774766 C T TIE1 Silent p.S384S 0.36 TCGA-BT-A20N-01 1 45205650 45205650 G A KIF2C Missense_Mutation p.A16T 0.14 tolerated(0.39) benign(0.001) TCGA-BT-A20N-01 1 46509289 46509289 C G PIK3R3 3'UTR 0.25 TCGA-BT-A20N-01 1 47333715 47333715 G C CYP4Z2P RNA 0.46 TCGA-BT-A20N-01 1 51929378 51929378 G A EPS15 Silent p.L156L 0.11 TCGA-BT-A20N-01 1 51934235 51934235 G C EPS15 Missense_Mutation p.F73L 0.27 deleterious(0) benign(0.29) TCGA-BT-A20N-01 1 53704126 53704126 C G MAGOH 5'UTR 0.44 TCGA-BT-A20N-01 1 54060429 54060429 C A GLIS1 Silent p.L49L 0.18 TCGA-BT-A20N-01 1 68620905 68620905 G A WLS Silent p.V179V 0.49 TCGA-BT-A20N-01 1 72748265 72748265 G C NEGR1 5'UTR 0.62 TCGA-BT-A20N-01 1 76190368 76190368 G C ACADM 5'Flank 0.40 TCGA-BT-A20N-01 1 84387005 84387005 T G TTLL7 Silent p.S405S 0.20 TCGA-BT-A20N-01 1 900368 900368 G T KLHL17 Missense_Mutation p.D576Y 0.57 tolerated(0.06) probably_damaging(0.995) TCGA-BT-A20N-01 1 92446894 92446894 T G BRDT Missense_Mutation p.L607R 0.17 tolerated(0.06) benign(0.026) TCGA-BT-A20N-01 20 10030758 10030758 C A ANKEF1 Nonsense_Mutation p.S514* 0.15 TCGA-BT-A20N-01 20 30309576 30309576 G T BCL2L1 Missense_Mutation p.A149E 0.05 deleterious(0) probably_damaging(0.995) TCGA-BT-A20N-01 20 30723942 30723942 G C TM9SF4 Missense_Mutation p.Q65H 0.10 tolerated(0.12) possibly_damaging(0.56) TCGA-BT-A20N-01 20 3127517 3127517 C G FASTKD5 Missense_Mutation p.E734Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 20 32026723 32026723 C G SNTA1 Silent p.G140G 0.07 TCGA-BT-A20N-01 20 48098449 48098449 A G KCNB1 Splice_Site p.X189_splice 0.05 TCGA-BT-A20N-01 20 54978796 54978796 G T CSTF1 3'UTR 0.13 TCGA-BT-A20N-01 20 55212966 55212966 A T TFAP2C Missense_Mutation p.K417I 0.06 deleterious(0.02) possibly_damaging(0.664) TCGA-BT-A20N-01 21 31973474 31973474 G T KRTAP22-1 Missense_Mutation p.G12V 0.25 unknown(0) TCGA-BT-A20N-01 21 39087121 39087121 C G KCNJ6 Missense_Mutation p.L113F 0.31 tolerated(0.2) benign(0.041) TCGA-BT-A20N-01 21 42080497 42080497 G A DSCAM Nonsense_Mutation p.Q82* 0.09 TCGA-BT-A20N-01 21 43161781 43161781 C T RIPK4 Silent p.L524L 0.22 TCGA-BT-A20N-01 21 43221851 43221851 G T PRDM15 Missense_Mutation p.T1358N 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.722) TCGA-BT-A20N-01 21 47655203 47655203 C A MCM3AP Silent p.L1974L 0.05 TCGA-BT-A20N-01 22 22664690 22664690 C T BMS1P20 RNA 0.36 TCGA-BT-A20N-01 22 38355472 38355472 G T POLR2F Silent p.A70A 0.18 TCGA-BT-A20N-01 22 39817833 39817833 G A TAB1 Missense_Mutation p.A260T 0.19 tolerated(0.2) benign(0.007) TCGA-BT-A20N-01 22 40415273 40415273 C T FAM83F Silent p.D197D 0.16 TCGA-BT-A20N-01 22 41752423 41752423 C T ZC3H7B Silent p.I820I 0.13 TCGA-BT-A20N-01 22 41753225 41753225 G A ZC3H7B Missense_Mutation p.C909Y 0.13 tolerated(0.55) benign(0.002) TCGA-BT-A20N-01 22 41923345 41923345 G C ACO2 Silent p.S669S 0.49 TCGA-BT-A20N-01 22 42335022 42335022 G C CENPM 3'UTR 0.11 TCGA-BT-A20N-01 22 42606218 42606218 C A TCF20 Silent p.S1698S 0.23 TCGA-BT-A20N-01 22 50649091 50649091 G A SELO Missense_Mutation p.D368N 0.39 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 22 50927504 50927504 C T MIOX Silent p.C148C 0.27 TCGA-BT-A20N-01 2 105883968 105883968 G C TGFBRAP1 Missense_Mutation p.Q819E 0.15 tolerated(0.14) benign(0.014) TCGA-BT-A20N-01 2 107040796 107040796 C G RGPD3 Missense_Mutation p.L1209F 0.15 deleterious(0) possibly_damaging(0.507) TCGA-BT-A20N-01 2 110849283 110849283 C G MALL Missense_Mutation p.G57A 0.05 deleterious(0.03) probably_damaging(1) TCGA-BT-A20N-01 2 128775266 128775266 C G SAP130 Missense_Mutation p.E138D 0.43 tolerated_low_confidence(0.18) benign(0.084) TCGA-BT-A20N-01 2 136567117 136567117 T C LCT Missense_Mutation p.N934D 0.06 tolerated(0.2) benign(0.41) TCGA-BT-A20N-01 2 148705641 148705641 C T ORC4 Silent p.E247E 0.06 TCGA-BT-A20N-01 2 168101392 168101392 A G XIRP2 Missense_Mutation p.T1164A 0.43 benign(0.072) TCGA-BT-A20N-01 2 168108453 168108453 A C XIRP2 Silent p.I3517I 0.06 TCGA-BT-A20N-01 2 179431334 179431334 C G TTN Missense_Mutation p.G26509R 0.10 TCGA-BT-A20N-01 2 179596956 179596956 A C TTN Missense_Mutation p.N5580K 0.42 TCGA-BT-A20N-01 2 190044277 190044277 T A COL5A2 Missense_Mutation p.L18F 0.45 possibly_damaging(0.829) TCGA-BT-A20N-01 2 191847151 191847151 G C STAT1 Missense_Mutation p.L514V 0.25 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 2 197092943 197092943 A G HECW2 Missense_Mutation p.F1267S 0.21 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 2 203693838 203693838 G T ICA1L Intron 0.25 TCGA-BT-A20N-01 2 20647450 20647450 C T RHOB Missense_Mutation p.P75L 0.25 deleterious(0.02) benign(0.409) TCGA-BT-A20N-01 2 220337015 220337015 T A SPEG Missense_Mutation p.L1301H 0.16 probably_damaging(0.998) TCGA-BT-A20N-01 2 241531491 241531491 G A CAPN10 Silent p.E204E 0.47 TCGA-BT-A20N-01 2 242038846 242038846 C T MTERFD2 Missense_Mutation p.R162H 0.07 deleterious(0) probably_damaging(0.998) TCGA-BT-A20N-01 2 25965729 25965729 C G ASXL2 Missense_Mutation p.L1159F 0.30 tolerated(0.17) benign(0.029) TCGA-BT-A20N-01 2 28531354 28531354 A G BRE Intron 0.21 TCGA-BT-A20N-01 2 32716552 32716552 C G BIRC6 Missense_Mutation p.P2756R 0.37 benign(0.387) TCGA-BT-A20N-01 2 49190073 49190073 A G FSHR Silent p.F629F 0.12 TCGA-BT-A20N-01 2 51254658 51254658 C G NRXN1 Missense_Mutation p.G252R 0.33 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 2 54093286 54093286 G A PSME4 Silent p.F1824F 0.22 TCGA-BT-A20N-01 2 66775088 66775088 C T MEIS1 Missense_Mutation p.S301F 0.46 deleterious(0) possibly_damaging(0.886) TCGA-BT-A20N-01 2 77748798 77748798 C A LRRTM4 5'UTR 0.10 TCGA-BT-A20N-01 3 101400024 101400024 C A RPL24 Silent p.V143V 0.27 TCGA-BT-A20N-01 3 10417161 10417161 C G ATP2B2 Missense_Mutation p.E457Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20N-01 3 113804793 113804793 A T QTRTD1 3'UTR 0.12 TCGA-BT-A20N-01 3 130159571 130159571 A T COL6A5 Missense_Mutation p.Y2130F 0.07 tolerated(0.45) possibly_damaging(0.557) TCGA-BT-A20N-01 3 130871348 130871348 G A NEK11 Missense_Mutation p.R255K 0.18 tolerated(0.17) benign(0.042) TCGA-BT-A20N-01 3 139108440 139108440 C G COPB2 5'UTR 0.40 TCGA-BT-A20N-01 3 151102914 151102914 A G MED12L Missense_Mutation p.M1640V 0.59 tolerated(0.33) possibly_damaging(0.822) TCGA-BT-A20N-01 3 155212182 155212182 G T PLCH1 Silent p.R661R 0.06 TCGA-BT-A20N-01 3 156983384 156983384 G A VEPH1 Silent p.F732F 0.48 TCGA-BT-A20N-01 3 168845829 168845829 G T MECOM Nonsense_Mutation p.C87* 0.09 TCGA-BT-A20N-01 3 169485742 169485742 C G ACTRT3 Missense_Mutation p.L199F 0.06 tolerated(1) probably_damaging(0.998) TCGA-BT-A20N-01 3 179082125 179082125 G C MFN1 Missense_Mutation p.D193H 0.08 deleterious(0) probably_damaging(0.988) TCGA-BT-A20N-01 3 186459867 186459867 C T KNG1 Missense_Mutation p.S561F 0.07 deleterious(0.01) possibly_damaging(0.521) TCGA-BT-A20N-01 3 187003830 187003830 T C MASP1 Missense_Mutation p.Y7C 0.12 tolerated(0.31) benign(0.003) TCGA-BT-A20N-01 3 35770879 35770879 G T ARPP21 Missense_Mutation p.G403V 0.11 tolerated(0.06) benign(0.128) TCGA-BT-A20N-01 3 38047993 38047993 C A VILL Silent p.A753A 0.46 TCGA-BT-A20N-01 3 46542298 46542298 G A RTP3 Missense_Mutation p.C203Y 0.05 tolerated(1) benign(0.02) TCGA-BT-A20N-01 3 47755937 47755937 C T SMARCC1 Missense_Mutation p.E254K 0.31 deleterious(0.01) benign(0.168) TCGA-BT-A20N-01 3 98217282 98217282 G T OR5K2 Missense_Mutation p.G253V 0.16 deleterious(0.01) possibly_damaging(0.483) TCGA-BT-A20N-01 4 100126055 100126055 G C ADH6 Intron 0.28 TCGA-BT-A20N-01 4 104510983 104510983 T C TACR3 Silent p.A418A 0.07 TCGA-BT-A20N-01 4 109740467 109740467 C T COL25A1 Missense_Mutation p.G622R 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 4 13602053 13602053 G C BOD1L1 Silent p.S2157S 0.30 TCGA-BT-A20N-01 4 154502664 154502664 G A KIAA0922 Missense_Mutation p.D282N 0.41 deleterious(0.02) probably_damaging(0.967) TCGA-BT-A20N-01 4 155505643 155505643 C A FGA Missense_Mutation p.G745V 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 4 155505644 155505644 C A FGA Missense_Mutation p.G745C 0.24 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 4 1746465 1746472 GGAGCAAG - TACC3 Frame_Shift_Del p.S787Pfs*30 0.25 TCGA-BT-A20N-01 4 184129307 184129307 G C WWC2 Missense_Mutation p.S148T 0.24 deleterious(0) probably_damaging(0.993) TCGA-BT-A20N-01 4 190862215 190862215 C A FRG1 Silent p.T17T 0.20 TCGA-BT-A20N-01 4 6325278 6325278 G T PPP2R2C Missense_Mutation p.F365L 0.22 deleterious(0.02) benign(0.347) TCGA-BT-A20N-01 4 677066 677066 C G MFSD7 Missense_Mutation p.E362Q 0.09 deleterious(0.05) probably_damaging(0.99) TCGA-BT-A20N-01 4 74320990 74320990 G T AFP Missense_Mutation p.G608V 0.33 deleterious(0) probably_damaging(0.927) TCGA-BT-A20N-01 4 83839377 83839377 T - THAP9 Frame_Shift_Del p.W672Gfs*30 0.11 TCGA-BT-A20N-01 4 83989596 83989596 A T COPS4 Missense_Mutation p.E336D 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20N-01 4 88036209 88036209 C G AFF1 Missense_Mutation p.R742G 0.31 tolerated(0.29) unknown(0) TCGA-BT-A20N-01 5 134191220 134191220 G C C5orf24 3'UTR 0.68 TCGA-BT-A20N-01 5 137849377 137849377 A C ETF1 Missense_Mutation p.S141A 0.53 tolerated(0.16) benign(0.001) TCGA-BT-A20N-01 5 140517289 140517289 C G PCDHB5 Nonsense_Mutation p.S758* 0.17 TCGA-BT-A20N-01 5 140751625 140751625 G A PCDHGB3 Missense_Mutation p.R555H 0.09 deleterious(0.01) benign(0.246) TCGA-BT-A20N-01 5 161494966 161494966 C A GABRG2 5'UTR 0.50 TCGA-BT-A20N-01 5 171318553 171318553 C T FBXW11 Missense_Mutation p.R236H 0.10 tolerated(0.5) benign(0.017) TCGA-BT-A20N-01 5 171765673 171765674 - A SH3PXD2B Frame_Shift_Ins p.L812Ffs*6 0.35 TCGA-BT-A20N-01 5 176518005 176518005 T A FGFR4 Missense_Mutation p.V168D 0.56 deleterious(0) probably_damaging(0.962) TCGA-BT-A20N-01 5 178503483 178503483 G A ZNF354C Missense_Mutation p.S22N 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-BT-A20N-01 5 34823943 34823943 A C RAI14 Missense_Mutation p.K669Q 0.09 tolerated(0.16) possibly_damaging(0.495) TCGA-BT-A20N-01 5 45303809 45303809 G A HCN1 Nonsense_Mutation p.R504* 0.25 TCGA-BT-A20N-01 5 45353214 45353223 ATCATTGAGT - HCN1 Frame_Shift_Del p.E452Dfs*3 0.08 TCGA-BT-A20N-01 5 64748566 64748566 T G ADAMTS6 Missense_Mutation p.I271L 0.54 tolerated(0.11) benign(0.291) TCGA-BT-A20N-01 5 70930791 70930791 C A MCCC2 Missense_Mutation p.H275Q 0.56 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-BT-A20N-01 5 90669643 90669643 T C ARRDC3 Missense_Mutation p.Y349C 0.59 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 6 122733619 122733619 G A HSF2 Silent p.L65L 0.54 TCGA-BT-A20N-01 6 126360069 126360069 T C TRMT11 3'UTR 0.62 TCGA-BT-A20N-01 6 127796469 127796469 C A SOGA3 Missense_Mutation p.R901L 0.06 deleterious(0.02) benign(0.224) TCGA-BT-A20N-01 6 134498867 134498879 GATTACTTCTGGA - SGK1 Intron 0.24 TCGA-BT-A20N-01 6 28228103 28228103 C A NKAPL Silent p.I318I 0.05 TCGA-BT-A20N-01 6 29640795 29640795 G C ZFP57 Missense_Mutation p.L365V 0.58 tolerated(0.15) benign(0.029) TCGA-BT-A20N-01 6 29640796 29640796 G T ZFP57 Silent p.T364T 0.58 TCGA-BT-A20N-01 6 30128418 30128418 C T TRIM10 Nonsense_Mutation p.W73* 0.62 TCGA-BT-A20N-01 6 31133762 31133762 C G POU5F1 Missense_Mutation p.K156N 0.62 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A20N-01 6 32018062 32018062 G T TNXB 5'Flank 0.13 TCGA-BT-A20N-01 6 36291124 36291126 TGG CTT C6orf222 Missense_Mutation p.PS472QG 0.17 TCGA-BT-A20N-01 6 3850672 3850672 G A FAM50B Silent p.V209V 0.39 TCGA-BT-A20N-01 6 39693107 39693107 G A KIF6 5'UTR 0.63 TCGA-BT-A20N-01 6 42236926 42236926 G T TRERF1 Missense_Mutation p.L135I 0.26 tolerated_low_confidence(0.47) benign(0.214) TCGA-BT-A20N-01 6 62887182 62887182 C A KHDRBS2 Nonsense_Mutation p.E43* 0.47 TCGA-BT-A20N-01 6 79650578 79650578 C G PHIP Missense_Mutation p.M1766I 0.13 tolerated_low_confidence(0.32) possibly_damaging(0.885) TCGA-BT-A20N-01 6 88331710 88331710 G C ORC3 Missense_Mutation p.L388F 0.15 deleterious(0.01) probably_damaging(0.945) TCGA-BT-A20N-01 7 123296034 123296034 A G LMOD2 Missense_Mutation p.Y6C 0.33 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 7 2284269 2284269 G C NUDT1 Silent p.L43L 0.49 TCGA-BT-A20N-01 7 24849496 24849503 CCGATGAA - OSBPL3 Frame_Shift_Del p.V747Afs*7 0.38 TCGA-BT-A20N-01 7 37780823 37780823 C G GPR141 Missense_Mutation p.S276R 0.06 deleterious(0) probably_damaging(0.996) TCGA-BT-A20N-01 7 42959130 42959130 A C PSMA2 Intron 0.04 TCGA-BT-A20N-01 7 44880564 44880564 G A H2AFV Silent p.S43S 0.07 TCGA-BT-A20N-01 7 48280473 48280473 C T ABCA13 Nonsense_Mutation p.Q358* 0.31 TCGA-BT-A20N-01 7 66703537 66703537 C A TYW1 3'UTR 0.32 TCGA-BT-A20N-01 7 72412672 72412672 T C POM121 Missense_Mutation p.S449P 0.07 tolerated(0.27) benign(0.013) TCGA-BT-A20N-01 7 99987517 99987517 C T PILRA Missense_Mutation p.T154M 0.10 tolerated(0.05) benign(0.004) TCGA-BT-A20N-01 8 107718630 107718630 G T OXR1 Missense_Mutation p.G295V 0.12 tolerated(0.41) benign(0.001) TCGA-BT-A20N-01 8 107718631 107718631 A G OXR1 Silent p.G295G 0.12 TCGA-BT-A20N-01 8 139833571 139833571 G A COL22A1 Silent p.F351F 0.07 TCGA-BT-A20N-01 8 22102534 22102534 G A POLR3D 5'Flank 0.33 TCGA-BT-A20N-01 8 26722541 26722541 G C ADRA1A 5'UTR 0.39 TCGA-BT-A20N-01 8 30704189 30704189 C T TEX15 Missense_Mutation p.R782K 0.08 tolerated(1) benign(0.002) TCGA-BT-A20N-01 8 38948794 38948794 C G ADAM9 Missense_Mutation p.Q743E 0.08 tolerated(0.17) benign(0.006) TCGA-BT-A20N-01 8 57025924 57025924 G T MOS Missense_Mutation p.N206K 0.34 deleterious(0) probably_damaging(1) TCGA-BT-A20N-01 8 59503463 59503463 G A NSMAF Missense_Mutation p.S692L 0.31 tolerated(0.39) benign(0.017) TCGA-BT-A20N-01 8 68049786 68049786 G T CSPP1 Missense_Mutation p.W636C 0.32 deleterious(0) probably_damaging(0.999) TCGA-BT-A20N-01 8 95392549 95392549 C T RAD54B Missense_Mutation p.D691N 0.37 deleterious(0) probably_damaging(0.997) TCGA-BT-A20N-01 8 95392597 95392609 TGTTCAAGGTTTG - RAD54B Frame_Shift_Del p.Q671Ffs*44 0.25 TCGA-BT-A20N-01 8 98973758 98973758 G T MATN2 Missense_Mutation p.A320S 0.11 tolerated(0.53) benign(0.027) TCGA-BT-A20N-01 8 99118512 99118512 C T HRSP12 Missense_Mutation p.D72N 0.10 tolerated(0.21) benign(0.027) TCGA-BT-A20N-01 9 117692469 117692469 A C TNFSF8 Missense_Mutation p.F39V 0.07 deleterious(0.03) benign(0.01) TCGA-BT-A20N-01 9 130119519 130119519 C A GARNL3 Missense_Mutation p.P653T 0.36 deleterious(0.01) probably_damaging(1) TCGA-BT-A20N-01 9 138379116 138379116 C T PPP1R26 Silent p.F920F 0.27 TCGA-BT-A20N-01 9 34514409 34514409 C T DNAI1 Silent p.S529S 0.57 TCGA-BT-A20N-01 9 36276944 36276944 C T GNE 5'UTR 0.40 TCGA-BT-A20N-01 9 77257389 77257389 A G RORB Missense_Mutation p.K99E 0.16 deleterious(0) possibly_damaging(0.756) TCGA-BT-A20N-01 9 88635862 88635862 G T NAA35 Missense_Mutation p.G699V 0.09 deleterious(0) probably_damaging(0.917) TCGA-BT-A20N-01 9 95285103 95285103 G C ECM2 Missense_Mutation p.Q16E 0.54 tolerated_low_confidence(0.41) benign(0.118) TCGA-BT-A20N-01 X 107413848 107413848 C T COL4A6 Missense_Mutation p.G1163R 0.39 probably_damaging(0.967) TCGA-BT-A20N-01 X 107850090 107850090 G A COL4A5 Missense_Mutation p.R788H 0.51 unknown(0) TCGA-BT-A20N-01 X 134033531 134033531 G C MOSPD1 5'UTR 0.55 TCGA-BT-A20N-01 X 140785779 140785779 T C SPANXD Missense_Mutation p.E46G 0.07 deleterious(0.01) benign(0.422) TCGA-BT-A20N-01 X 140969237 140969237 G T MAGEC3 Silent p.V188V 0.61 TCGA-BT-A20N-01 X 154282952 154282952 G C FUNDC2 3'UTR 0.12 TCGA-BT-A20N-01 X 50094645 50094645 G T CCNB3 Missense_Mutation p.M1377I 0.36 tolerated(0.34) benign(0.004) TCGA-BT-A20N-01 X 89177393 89177393 T A TGIF2LX Missense_Mutation p.N103K 0.19 deleterious(0.04) probably_damaging(0.992) TCGA-BT-A20O-01 10 105182763 105182763 C T PDCD11 Missense_Mutation p.T839M 0.05 tolerated(0.08) benign(0.046) TCGA-BT-A20O-01 10 105953694 105953694 C T WDR96 Missense_Mutation p.V458I 0.14 tolerated(0.29) benign(0.013) TCGA-BT-A20O-01 10 106982877 106982877 C A SORCS3 Missense_Mutation p.P913H 0.09 deleterious(0.01) benign(0.202) TCGA-BT-A20O-01 10 117704277 117704277 G A ATRNL1 Missense_Mutation p.G1376E 0.12 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 10 121563770 121563770 C T INPP5F Missense_Mutation p.S401L 0.08 deleterious(0.03) benign(0.243) TCGA-BT-A20O-01 10 12204226 12204226 G T SEC61A2 Silent p.L394L 0.07 TCGA-BT-A20O-01 10 5762896 5762896 C G FAM208B Missense_Mutation p.L37V 0.11 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 10 63829550 63829550 A G ARID5B Missense_Mutation p.Y398C 0.11 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 10 71075755 71075755 G A HK1 Intron 0.08 TCGA-BT-A20O-01 10 90701132 90701132 G A ACTA2 Missense_Mutation p.S157F 0.07 deleterious_low_confidence(0) possibly_damaging(0.78) TCGA-BT-A20O-01 10 95454653 95454653 G A FRA10AC1 Silent p.Y87Y 0.07 TCGA-BT-A20O-01 10 96731858 96731858 T C CYP2C9 Intron 0.11 TCGA-BT-A20O-01 11 104868181 104868181 A C CASP5 Missense_Mutation p.F392V 0.12 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 11 10821761 10821761 T C EIF4G2 Silent p.L665L 0.18 TCGA-BT-A20O-01 11 118452000 118452000 G A ARCN1 Missense_Mutation p.A15T 0.10 tolerated(0.25) benign(0.158) TCGA-BT-A20O-01 11 12265655 12265655 G A MICAL2 Missense_Mutation p.R927K 0.07 tolerated_low_confidence(0.39) benign(0.002) TCGA-BT-A20O-01 11 17474774 17474774 G A ABCC8 Silent p.Y356Y 0.05 TCGA-BT-A20O-01 11 1861878 1861878 G A TNNI2 Missense_Mutation p.E60K 0.10 deleterious(0.02) possibly_damaging(0.448) TCGA-BT-A20O-01 11 33886306 33886306 G T LMO2 Nonsense_Mutation p.C102* 0.11 TCGA-BT-A20O-01 11 45877530 45877530 C T CRY2 Intron 0.08 TCGA-BT-A20O-01 11 4869937 4869937 G A OR51S1 Missense_Mutation p.P168S 0.06 deleterious(0.02) probably_damaging(1) TCGA-BT-A20O-01 11 6415196 6415196 G A SMPD1 Missense_Mutation p.E471K 0.09 tolerated(0.12) probably_damaging(0.986) TCGA-BT-A20O-01 11 64883439 64883439 G C TM7SF2 Missense_Mutation p.E391Q 0.10 deleterious(0.03) probably_damaging(1) TCGA-BT-A20O-01 11 75439097 75439097 G A MOGAT2 Silent p.G186G 0.07 TCGA-BT-A20O-01 11 82877725 82877725 A C PCF11 Silent p.R596R 0.05 TCGA-BT-A20O-01 11 92087450 92087450 T G FAT3 Nonsense_Mutation p.Y724* 0.10 TCGA-BT-A20O-01 11 93103298 93103298 G C CCDC67 Silent p.L164L 0.25 TCGA-BT-A20O-01 12 10149501 10149501 G A CLEC1B Nonsense_Mutation p.Q128* 0.04 TCGA-BT-A20O-01 12 104336352 104336352 G A HSP90B1 Silent p.K474K 0.07 TCGA-BT-A20O-01 12 104336359 104336359 G T HSP90B1 Missense_Mutation p.D477Y 0.06 deleterious(0) benign(0.435) TCGA-BT-A20O-01 12 104336567 104336567 G C HSP90B1 Missense_Mutation p.R546T 0.07 tolerated(0.28) possibly_damaging(0.876) TCGA-BT-A20O-01 12 111350897 111350897 T G MYL2 Intron 0.08 TCGA-BT-A20O-01 12 120159203 120159203 G A CIT Silent p.L1215L 0.14 TCGA-BT-A20O-01 12 12037408 12037408 C T ETV6 Nonsense_Mutation p.Q347* 0.09 TCGA-BT-A20O-01 12 129373237 129373237 G A GLT1D1 Missense_Mutation p.A91T 0.14 tolerated(0.41) benign(0) TCGA-BT-A20O-01 12 133374950 133374950 G T GOLGA3 Silent p.I638I 0.07 TCGA-BT-A20O-01 12 31850769 31850769 C T AMN1 Missense_Mutation p.D147N 0.05 tolerated(1) benign(0.041) TCGA-BT-A20O-01 12 47472350 47472350 G T AMIGO2 Missense_Mutation p.L146I 0.07 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 12 50453726 50453726 G A ASIC1 Missense_Mutation p.D183N 0.11 tolerated(1) benign(0.008) TCGA-BT-A20O-01 12 51890800 51890800 C G SLC4A8 Silent p.V991V 0.06 TCGA-BT-A20O-01 12 54765456 54765456 C T ZNF385A Silent p.E155E 0.18 TCGA-BT-A20O-01 12 56600547 56600547 C T RNF41 Missense_Mutation p.R213H 0.09 tolerated(0.08) benign(0.003) TCGA-BT-A20O-01 12 6483849 6483849 T C SCNN1A Missense_Mutation p.E93G 0.08 tolerated(0.09) benign(0.228) TCGA-BT-A20O-01 12 71977788 71977788 G A LGR5 Silent p.V666V 0.08 TCGA-BT-A20O-01 12 73046177 73046177 A G TRHDE Missense_Mutation p.I872M 0.07 tolerated(0.06) probably_damaging(0.972) TCGA-BT-A20O-01 13 28636122 28636122 C G FLT3 Missense_Mutation p.D84H 0.12 deleterious(0.02) benign(0.212) TCGA-BT-A20O-01 13 42385394 42385394 A C VWA8 Missense_Mutation p.L677R 0.10 deleterious(0) possibly_damaging(0.707) TCGA-BT-A20O-01 14 105408255 105408255 G T AHNAK2 Silent p.L4511L 0.14 TCGA-BT-A20O-01 14 105408514 105408514 G A AHNAK2 Missense_Mutation p.S4425F 0.09 probably_damaging(0.996) TCGA-BT-A20O-01 14 39819487 39819487 C T CTAGE5 3'UTR 0.13 TCGA-BT-A20O-01 14 52481073 52481073 T C NID2 Missense_Mutation p.I1118V 0.20 deleterious(0.01) benign(0.295) TCGA-BT-A20O-01 14 74973930 74973930 G C LTBP2 Missense_Mutation p.L1287V 0.10 tolerated(0.15) benign(0.297) TCGA-BT-A20O-01 14 96730151 96730151 C G BDKRB1 Missense_Mutation p.I44M 0.07 tolerated(0.11) possibly_damaging(0.736) TCGA-BT-A20O-01 15 68937670 68937670 G A CORO2B Missense_Mutation p.G63S 0.05 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 15 68937671 68937671 G T CORO2B Missense_Mutation p.G63V 0.05 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 15 77345133 77345133 C A TSPAN3 Missense_Mutation p.D191Y 0.16 tolerated(0.18) benign(0.111) TCGA-BT-A20O-01 15 77472430 77472430 C T PEAK1 Silent p.E613E 0.07 TCGA-BT-A20O-01 15 81625521 81625521 C T TMC3 Missense_Mutation p.E848K 0.09 tolerated_low_confidence(0.16) benign(0.005) TCGA-BT-A20O-01 15 89074506 89074506 C A DET1 Missense_Mutation p.C155F 0.13 tolerated(0.24) probably_damaging(0.951) TCGA-BT-A20O-01 16 18859259 18859259 G A SMG1 Missense_Mutation p.S1907F 0.17 deleterious(0.02) possibly_damaging(0.459) TCGA-BT-A20O-01 16 20997001 20997001 C G DNAH3 Missense_Mutation p.D2355H 0.09 deleterious(0) probably_damaging(0.977) TCGA-BT-A20O-01 16 32077616 32077616 C A IGHV3OR16-9 Missense_Mutation p.N77K 0.05 deleterious_low_confidence(0.01) benign(0.308) TCGA-BT-A20O-01 16 3339743 3339743 G T ZNF263 Nonsense_Mutation p.E413* 0.09 TCGA-BT-A20O-01 16 3340603 3340603 G C ZNF263 3'UTR 0.12 TCGA-BT-A20O-01 16 3817750 3817750 G C CREBBP Nonsense_Mutation p.S1074* 0.08 TCGA-BT-A20O-01 16 4466517 4466517 C T CORO7 Translation_Start_Site p.M1? 0.14 deleterious(0) probably_damaging(0.921) TCGA-BT-A20O-01 16 67979985 67979985 C G SLC12A4 Missense_Mutation p.V872L 0.07 deleterious(0) possibly_damaging(0.668) TCGA-BT-A20O-01 16 72992721 72992721 C T ZFHX3 Missense_Mutation p.E442K 0.12 possibly_damaging(0.899) TCGA-BT-A20O-01 16 75512501 75512501 C A CHST6 3'UTR 0.14 TCGA-BT-A20O-01 16 90160926 90160926 G A TUBB8P7 RNA 0.11 TCGA-BT-A20O-01 17 17921970 17921970 G A ATPAF2 Missense_Mutation p.H255Y 0.06 deleterious(0) probably_damaging(0.982) TCGA-BT-A20O-01 17 27069026 27069026 G C NEK8 3'UTR 0.14 TCGA-BT-A20O-01 17 27909741 27909741 C T GIT1 Missense_Mutation p.G127E 0.08 tolerated(0.33) possibly_damaging(0.895) TCGA-BT-A20O-01 17 39553472 39553472 A T KRT31 Missense_Mutation p.F107Y 0.10 tolerated(0.26) probably_damaging(0.982) TCGA-BT-A20O-01 17 4015972 4015972 C G ZZEF1 Missense_Mutation p.D333H 0.10 deleterious(0) probably_damaging(0.997) TCGA-BT-A20O-01 17 44076786 44076786 C A STH Silent p.T47T 0.11 TCGA-BT-A20O-01 17 46000404 46000404 C T SP2 Missense_Mutation p.T379I 0.15 tolerated(0.18) benign(0.021) TCGA-BT-A20O-01 17 46673766 46673766 C T HOXB6 3'UTR 0.20 TCGA-BT-A20O-01 17 48072068 48072068 G A DLX3 Missense_Mutation p.R99W 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-BT-A20O-01 17 59934548 59934548 A T BRIP1 Missense_Mutation p.L84M 0.15 tolerated(0.24) possibly_damaging(0.785) TCGA-BT-A20O-01 17 61623123 61623123 C G KCNH6 Missense_Mutation p.L949V 0.08 tolerated_low_confidence(0.15) benign(0.005) TCGA-BT-A20O-01 17 61897650 61897650 T C FTSJ3 Missense_Mutation p.K741E 0.06 deleterious(0) probably_damaging(0.987) TCGA-BT-A20O-01 17 62964433 62964433 C G AMZ2P1 RNA 0.18 TCGA-BT-A20O-01 17 641131 641131 G A FAM57A Missense_Mutation p.M84I 0.08 deleterious(0.03) possibly_damaging(0.622) TCGA-BT-A20O-01 17 66937049 66937049 G A ABCA8 Missense_Mutation p.H51Y 0.08 tolerated(0.41) possibly_damaging(0.906) TCGA-BT-A20O-01 17 67045523 67045523 C T ABCA9 Missense_Mutation p.D69N 0.13 deleterious(0.03) possibly_damaging(0.742) TCGA-BT-A20O-01 17 67189995 67189995 G T ABCA10 Missense_Mutation p.A494D 0.08 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 17 7162203 7162203 C T ELP5 Missense_Mutation p.A265V 0.16 deleterious(0) probably_damaging(0.94) TCGA-BT-A20O-01 17 7577103 7577103 C G TP53 Missense_Mutation p.G279R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 17 80529635 80529635 G C FOXK2 Silent p.L266L 0.11 TCGA-BT-A20O-01 17 8273001 8273001 T C KRBA2 Silent p.L310L 0.12 TCGA-BT-A20O-01 18 29511315 29511315 C T TRAPPC8 Missense_Mutation p.G110E 0.10 deleterious(0) probably_damaging(0.961) TCGA-BT-A20O-01 18 30092341 30092341 C G WBP11P1 RNA 0.13 TCGA-BT-A20O-01 18 40323522 40323522 C G RIT2 Missense_Mutation p.R197T 0.13 deleterious(0.05) benign(0.227) TCGA-BT-A20O-01 19 11545894 11545894 C G CCDC151 5'UTR 0.19 TCGA-BT-A20O-01 19 17263473 17263473 C G MYO9B Missense_Mutation p.L319V 0.12 deleterious(0.02) probably_damaging(0.968) TCGA-BT-A20O-01 19 31039753 31039753 C G ZNF536 Missense_Mutation p.S1076C 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.576) TCGA-BT-A20O-01 19 34832940 34832940 C T KIAA0355 Missense_Mutation p.R701W 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-BT-A20O-01 19 42793047 42793047 T C CIC Silent p.S313S 0.23 TCGA-BT-A20O-01 19 42793048 42793048 G T CIC Nonsense_Mutation p.E314* 0.24 TCGA-BT-A20O-01 19 42793049 42793049 A T CIC Missense_Mutation p.E314V 0.21 benign(0.156) TCGA-BT-A20O-01 19 44079154 44079154 T C XRCC1 Missense_Mutation p.T18A 0.18 deleterious(0.04) benign(0.013) TCGA-BT-A20O-01 19 44352248 44352248 G T ZNF283 Missense_Mutation p.G499W 0.17 deleterious(0.02) possibly_damaging(0.887) TCGA-BT-A20O-01 19 44352249 44352249 G C ZNF283 Missense_Mutation p.G499A 0.16 tolerated(0.36) benign(0.01) TCGA-BT-A20O-01 19 45855835 45855835 G A ERCC2 Missense_Mutation p.H659Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-BT-A20O-01 19 47124901 47124901 G C PTGIR Missense_Mutation p.P266R 0.23 tolerated(0.08) possibly_damaging(0.463) TCGA-BT-A20O-01 19 49967904 49967904 C T ALDH16A1 Silent p.L485L 0.06 TCGA-BT-A20O-01 19 53352431 53352431 G A ZNF468 Silent p.F17F 0.04 TCGA-BT-A20O-01 19 54502980 54502980 G A CACNG6 Missense_Mutation p.A167T 0.03 tolerated(0.5) possibly_damaging(0.467) TCGA-BT-A20O-01 19 54632680 54632680 G C PRPF31 Missense_Mutation p.G437R 0.20 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 19 54632681 54632681 G C PRPF31 Missense_Mutation p.G437A 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-BT-A20O-01 19 55696892 55696892 C T PTPRH Missense_Mutation p.G1014S 0.14 probably_damaging(0.951) TCGA-BT-A20O-01 19 55776711 55776711 C A HSPBP1 Nonsense_Mutation p.E314* 0.07 TCGA-BT-A20O-01 19 5772930 5772930 C A CATSPERD Missense_Mutation p.T632N 0.06 deleterious(0) possibly_damaging(0.795) TCGA-BT-A20O-01 1 107937933 107937933 G C NTNG1 Missense_Mutation p.G349R 0.06 deleterious(0) probably_damaging(0.987) TCGA-BT-A20O-01 1 109342863 109342863 G A STXBP3 Missense_Mutation p.D491N 0.16 deleterious(0.03) possibly_damaging(0.903) TCGA-BT-A20O-01 1 114201796 114201796 G C MAGI3 Silent p.G908G 0.10 TCGA-BT-A20O-01 1 116569600 116569600 A G SLC22A15 Missense_Mutation p.I229V 0.07 tolerated(1) benign(0) TCGA-BT-A20O-01 1 153792155 153792155 T C GATAD2B Missense_Mutation p.N131S 0.12 tolerated(0.1) benign(0.013) TCGA-BT-A20O-01 1 155449667 155449667 C G ASH1L Missense_Mutation p.L998F 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BT-A20O-01 1 156563828 156563828 G A APOA1BP Silent p.L273L 0.07 TCGA-BT-A20O-01 1 161018826 161018826 T C ARHGAP30 Missense_Mutation p.Q662R 0.14 tolerated_low_confidence(0.05) benign(0) TCGA-BT-A20O-01 1 1669760 1669760 C A SLC35E2 Nonsense_Mutation p.G196* 0.24 TCGA-BT-A20O-01 1 171303803 171303803 G C FMO4 Missense_Mutation p.E361Q 0.10 tolerated(0.13) possibly_damaging(0.624) TCGA-BT-A20O-01 1 186159026 186159026 C A HMCN1 3'UTR 0.10 TCGA-BT-A20O-01 1 186329966 186329966 C G TPR Missense_Mutation p.E344Q 0.05 benign(0.403) TCGA-BT-A20O-01 1 186330823 186330823 C G TPR Missense_Mutation p.E297Q 0.08 benign(0.403) TCGA-BT-A20O-01 1 203139485 203139485 C T MYBPH Missense_Mutation p.E343K 0.06 deleterious(0.01) possibly_damaging(0.882) TCGA-BT-A20O-01 1 203743363 203743363 G A LAX1 Missense_Mutation p.D251N 0.11 tolerated(0.54) benign(0.077) TCGA-BT-A20O-01 1 205902177 205902177 C T SLC26A9 Missense_Mutation p.G54E 0.13 tolerated(0.42) benign(0.104) TCGA-BT-A20O-01 1 21221934 21221934 T C EIF4G3 Missense_Mutation p.D637G 0.09 tolerated(1) benign(0.017) TCGA-BT-A20O-01 1 218504452 218504452 A G RRP15 3'UTR 0.12 TCGA-BT-A20O-01 1 227174193 227174193 G T ADCK3 Missense_Mutation p.G567W 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 1 227227863 227227863 C G CDC42BPA Silent p.V1021V 0.11 TCGA-BT-A20O-01 1 235972029 235972029 G A LYST Nonsense_Mutation p.Q697* 0.10 TCGA-BT-A20O-01 1 237756804 237756804 G A RYR2 Missense_Mutation p.G1435E 0.10 probably_damaging(0.999) TCGA-BT-A20O-01 1 247053295 247053295 C T AHCTF1 Missense_Mutation p.R715H 0.15 tolerated(0.36) benign(0.139) TCGA-BT-A20O-01 1 26349162 26349162 T G EXTL1 Missense_Mutation p.S9A 0.06 tolerated(0.18) unknown(0) TCGA-BT-A20O-01 1 27124373 27124373 C T PIGV 3'UTR 0.08 TCGA-BT-A20O-01 1 32673403 32673403 T A IQCC Nonsense_Mutation p.L454* 0.09 TCGA-BT-A20O-01 1 32690056 32690056 G C EIF3I Missense_Mutation p.R77P 0.07 deleterious(0) possibly_damaging(0.8) TCGA-BT-A20O-01 1 36636690 36636690 G T MAP7D1 Missense_Mutation p.M55I 0.09 benign(0.23) TCGA-BT-A20O-01 1 44466560 44466560 C T SLC6A9 Intron 0.08 TCGA-BT-A20O-01 1 53504595 53504595 G A SCP2 Missense_Mutation p.E449K 0.08 tolerated(0.12) probably_damaging(0.998) TCGA-BT-A20O-01 1 7724195 7724195 A T CAMTA1 Nonsense_Mutation p.K530* 0.07 TCGA-BT-A20O-01 1 92709803 92709803 G A C1orf146 Missense_Mutation p.E64K 0.12 tolerated(0.08) benign(0.02) TCGA-BT-A20O-01 1 93683394 93683394 C A CCDC18 Missense_Mutation p.Q697K 0.09 deleterious(0.04) benign(0.084) TCGA-BT-A20O-01 20 1961214 1961214 G A PDYN Missense_Mutation p.R174C 0.07 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 20 3786464 3786473 GTGGATGGCC - CDC25B 3'UTR 0.10 TCGA-BT-A20O-01 20 39832810 39832810 G T ZHX3 Missense_Mutation p.N249K 0.08 tolerated(0.91) benign(0) TCGA-BT-A20O-01 20 51870547 51870547 C T TSHZ2 Missense_Mutation p.R184W 0.09 deleterious(0.01) probably_damaging(0.947) TCGA-BT-A20O-01 20 56138776 56138776 C T PCK1 Silent p.D318D 0.09 TCGA-BT-A20O-01 20 60963011 60963011 C T RPS21 Intron 0.09 TCGA-BT-A20O-01 21 39671406 39671406 G A KCNJ15 Missense_Mutation p.V75M 0.07 deleterious(0.02) possibly_damaging(0.906) TCGA-BT-A20O-01 21 39755633 39755633 T C ERG Missense_Mutation p.M385V 0.10 deleterious(0) probably_damaging(0.992) TCGA-BT-A20O-01 22 17447085 17447085 G C GAB4 Missense_Mutation p.S398C 0.10 tolerated(0.18) benign(0.091) TCGA-BT-A20O-01 22 20749694 20749694 G A ZNF74 Missense_Mutation p.E36K 0.06 tolerated(0.83) benign(0.115) TCGA-BT-A20O-01 22 22556409 22556409 T G IGLV11-55 Missense_Mutation p.S75A 0.09 deleterious(0.01) benign(0.304) TCGA-BT-A20O-01 22 29695597 29695597 C T EWSR1 Missense_Mutation p.R568C 0.10 tolerated_low_confidence(0.08) unknown(0) TCGA-BT-A20O-01 22 30057255 30057255 C T NF2 Missense_Mutation p.P246L 0.09 tolerated(0.27) benign(0.008) TCGA-BT-A20O-01 22 36661781 36661781 C T APOL1 Missense_Mutation p.S316L 0.10 tolerated(0.24) benign(0.194) TCGA-BT-A20O-01 22 40415261 40415261 C T FAM83F Silent p.Y193Y 0.22 TCGA-BT-A20O-01 22 42609633 42609633 G A TCF20 Missense_Mutation p.P560L 0.18 probably_damaging(0.973) TCGA-BT-A20O-01 22 46759909 46759909 C T CELSR1 Missense_Mutation p.D3007N 0.32 tolerated_low_confidence(0.38) benign(0.004) TCGA-BT-A20O-01 22 50718479 50718479 C A PLXNB2 Missense_Mutation p.R1399S 0.10 deleterious(0.02) possibly_damaging(0.639) TCGA-BT-A20O-01 2 132276730 132276730 C T AC093838.4 RNA 0.11 TCGA-BT-A20O-01 2 136673932 136673932 C T DARS Missense_Mutation p.E324K 0.07 deleterious(0) probably_damaging(0.954) TCGA-BT-A20O-01 2 138320875 138320875 G C THSD7B Missense_Mutation p.E1078Q 0.14 tolerated(0.06) unknown(0) TCGA-BT-A20O-01 2 145147516 145147516 G A ZEB2 Silent p.H1049H 0.14 TCGA-BT-A20O-01 2 170009322 170009322 C A LRP2 Missense_Mutation p.D4150Y 0.08 probably_damaging(0.992) TCGA-BT-A20O-01 2 178082493 178082493 C T HNRNPA3 Missense_Mutation p.P294L 0.07 tolerated(0.31) unknown(0) TCGA-BT-A20O-01 2 202131238 202131238 T C CASP8 Missense_Mutation p.I69T 0.09 deleterious(0) probably_damaging(0.991) TCGA-BT-A20O-01 2 220154823 220154823 C G PTPRN 3'UTR 0.23 TCGA-BT-A20O-01 2 238999877 238999877 G A SCLY Missense_Mutation p.M309I 0.09 deleterious(0.02) possibly_damaging(0.74) TCGA-BT-A20O-01 2 30974059 30974059 G - CAPN13 Frame_Shift_Del p.N383Mfs*15 0.14 TCGA-BT-A20O-01 2 55402848 55402848 G C CLHC1 3'UTR 0.28 TCGA-BT-A20O-01 3 10370803 10370803 C T ATP2B2 Missense_Mutation p.V1143I 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A20O-01 3 122459659 122459659 C T HSPBAP1 Missense_Mutation p.D334N 0.08 tolerated(0.22) benign(0.005) TCGA-BT-A20O-01 3 156234066 156234066 C T KCNAB1 Silent p.G291G 0.10 TCGA-BT-A20O-01 3 169896709 169896709 G A PHC3 Missense_Mutation p.T11I 0.06 deleterious_low_confidence(0.01) benign(0.047) TCGA-BT-A20O-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.15 deleterious(0.04) probably_damaging(0.96) TCGA-BT-A20O-01 3 32927521 32927521 G A TRIM71 Silent p.K372K 0.11 TCGA-BT-A20O-01 3 32996003 32996003 T C CCR4 3'UTR 0.08 TCGA-BT-A20O-01 3 38318947 38318947 A G SLC22A13 Silent p.T549T 0.08 TCGA-BT-A20O-01 3 49294677 49294677 G A CCDC36 Missense_Mutation p.D583N 0.10 deleterious(0.04) unknown(0) TCGA-BT-A20O-01 4 152065152 152065152 C G SH3D19 Missense_Mutation p.E454D 0.07 deleterious(0.04) possibly_damaging(0.676) TCGA-BT-A20O-01 4 153247366 153247366 C G FBXW7 Missense_Mutation p.R479P 0.08 deleterious(0) probably_damaging(1) TCGA-BT-A20O-01 4 156715077 156715077 G C GUCY1B3 Missense_Mutation p.E189Q 0.08 tolerated(0.4) benign(0.01) TCGA-BT-A20O-01 4 187541654 187541654 G T FAT1 Nonsense_Mutation p.S2029* 0.10 TCGA-BT-A20O-01 4 2950082 2950082 C G NOP14 Missense_Mutation p.E446Q 0.10 tolerated(0.41) benign(0.05) TCGA-BT-A20O-01 4 39523129 39523129 A G UGDH Missense_Mutation p.F2L 0.05 tolerated(0.2) benign(0.003) TCGA-BT-A20O-01 4 42069148 42069148 T C SLC30A9 Silent p.D397D 0.04 TCGA-BT-A20O-01 4 68928744 68928744 A G TMPRSS11F Intron 0.14 TCGA-BT-A20O-01 4 69692212 69692212 C T UGT2B10 Silent p.L362L 0.07 TCGA-BT-A20O-01 4 88239530 88239530 T C HSD17B13 Missense_Mutation p.Y90C 0.08 deleterious(0) probably_damaging(0.928) TCGA-BT-A20O-01 5 114499268 114499268 C T TRIM36 Missense_Mutation p.R82Q 0.07 tolerated(0.17) probably_damaging(0.997) TCGA-BT-A20O-01 5 127484463 127484463 C T SLC12A2 Silent p.N633N 0.08 TCGA-BT-A20O-01 5 137756428 137756428 A G KDM3B Missense_Mutation p.E1250G 0.13 deleterious(0.02) possibly_damaging(0.87) TCGA-BT-A20O-01 5 140475832 140475832 C G PCDHB2 Silent p.A486A 0.06 TCGA-BT-A20O-01 5 169661182 169661182 G A C5orf58 Missense_Mutation p.E15K 0.09 tolerated(0.09) possibly_damaging(0.801) TCGA-BT-A20O-01 5 176468221 176468221 A T ZNF346 Silent p.A90A 0.10 TCGA-BT-A20O-01 5 33624410 33624410 C T ADAMTS12 Missense_Mutation p.R690H 0.09 deleterious(0.05) benign(0.109) TCGA-BT-A20O-01 5 80390805 80390805 C A RASGRF2 Silent p.I583I 0.13 TCGA-BT-A20O-01 6 109996891 109996891 C T AK9 Missense_Mutation p.E20K 0.13 deleterious(0.03) possibly_damaging(0.799) TCGA-BT-A20O-01 6 116600201 116600201 G C TSPYL1 Missense_Mutation p.L265V 0.08 deleterious(0.03) possibly_damaging(0.836) TCGA-BT-A20O-01 6 12125108 12125108 C T HIVEP1 Nonsense_Mutation p.Q1694* 0.14 TCGA-BT-A20O-01 6 136904781 136904781 G A MAP3K5 Missense_Mutation p.T1108I 0.11 tolerated(0.06) benign(0.188) TCGA-BT-A20O-01 6 160199685 160199685 C T ACAT2 Intron 0.07 TCGA-BT-A20O-01 6 24472819 24472819 G A GPLD1 Missense_Mutation p.A179V 0.12 tolerated(0.16) benign(0.446) TCGA-BT-A20O-01 6 34003916 34003916 G C GRM4 Missense_Mutation p.I657M 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-BT-A20O-01 6 35454253 35454253 C G TEAD3 Missense_Mutation p.E63Q 0.10 deleterious(0) probably_damaging(0.947) TCGA-BT-A20O-01 6 36168658 36168658 C T BRPF3 Silent p.L187L 0.06 TCGA-BT-A20O-01 6 46849233 46849233 G A GPR116 Missense_Mutation p.T258I 0.07 tolerated(0.08) probably_damaging(0.992) TCGA-BT-A20O-01 6 56401661 56401661 C T DST Silent p.Q2939Q 0.07 TCGA-BT-A20O-01 7 101845239 101845239 C G CUX1 Missense_Mutation p.P899A 0.15 tolerated(0.1) unknown(0) TCGA-BT-A20O-01 7 116166725 116166725 C G CAV1 Silent p.L59L 0.06 TCGA-BT-A20O-01 7 1513805 1513805 A G INTS1 Missense_Mutation p.L1943P 0.24 tolerated(0.26) benign(0.397) TCGA-BT-A20O-01 7 29539546 29539546 T C CHN2 Missense_Mutation p.L268P 0.20 deleterious(0) probably_damaging(0.999) TCGA-BT-A20O-01 7 36571798 36571798 G A AOAH Silent p.H460H 0.10 TCGA-BT-A20O-01 7 926266 926266 G A GET4 Missense_Mutation p.E99K 0.18 tolerated(0.75) benign(0.005) TCGA-BT-A20O-01 8 110457514 110457514 C T PKHD1L1 Missense_Mutation p.P1806S 0.09 deleterious(0) probably_damaging(0.983) TCGA-BT-A20O-01 8 124748098 124748098 G A ANXA13 Missense_Mutation p.S12L 0.06 tolerated(0.64) possibly_damaging(0.447) TCGA-BT-A20O-01 8 89198769 89198769 G A MMP16 Missense_Mutation p.H114Y 0.05 deleterious(0) benign(0.029) TCGA-BT-A20O-01 8 9413396 9413396 G C TNKS 5'Flank 0.18 TCGA-BT-A20O-01 9 100249560 100249560 C T TDRD7 Silent p.L1008L 0.09 TCGA-BT-A20O-01 9 135765272 135765272 C T C9orf9 Intron 0.09 TCGA-BT-A20O-01 9 139563050 139563050 C G EGFL7 Missense_Mutation p.S41C 0.10 deleterious(0.01) possibly_damaging(0.8) TCGA-BT-A20O-01 9 33676580 33676580 C A PTENP1 RNA 0.19 TCGA-BT-A20O-01 9 35547473 35547473 G A RUSC2 Missense_Mutation p.A319T 0.10 deleterious(0.05) benign(0.007) TCGA-BT-A20O-01 9 434792 434792 G A DOCK8 Silent p.K1632K 0.10 TCGA-BT-A20O-01 9 43625185 43625185 G A SPATA31A6 Nonsense_Mutation p.Q1168* 0.05 TCGA-BT-A20O-01 9 97767884 97767884 G C C9orf3 Missense_Mutation p.E701Q 0.12 tolerated(0.4) benign(0.021) TCGA-BT-A20O-01 X 104478538 104478538 G C IL1RAPL2 Missense_Mutation p.L131F 0.11 deleterious(0) probably_damaging(0.987) TCGA-BT-A20O-01 X 106144121 106144121 G A RIPPLY1 Missense_Mutation p.S105F 0.45 deleterious(0) probably_damaging(0.97) TCGA-BT-A20O-01 X 106171926 106171926 G A CLDN2 Missense_Mutation p.M156I 0.16 tolerated(0.08) possibly_damaging(0.685) TCGA-BT-A20O-01 X 119694330 119694330 C T CUL4B Missense_Mutation p.R73K 0.24 tolerated_low_confidence(0.48) benign(0) TCGA-BT-A20O-01 X 123805551 123805551 C T TENM1 Missense_Mutation p.D384N 0.14 tolerated(0.1) possibly_damaging(0.83) TCGA-BT-A20O-01 X 130219951 130219951 A T ARHGAP36 Missense_Mutation p.K390I 0.05 deleterious(0) possibly_damaging(0.781) TCGA-BT-A20O-01 X 130417088 130417088 T G IGSF1 Missense_Mutation p.K273T 0.21 tolerated(0.18) possibly_damaging(0.506) TCGA-BT-A20O-01 X 153225574 153225574 C T HCFC1 Missense_Mutation p.A375T 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-BT-A20O-01 X 65486316 65486316 G T HEPH Silent p.V1147V 0.08 TCGA-BT-A20O-01 X 68836299 68836299 C T EDA Silent p.L49L 0.16 TCGA-BT-A20P-01 10 38241395 38241395 C T ZNF25 Missense_Mutation p.C344Y 0.37 deleterious(0) probably_damaging(1) TCGA-BT-A20P-01 10 72061222 72061222 C T LRRC20 Missense_Mutation p.S148N 0.36 tolerated(0.33) possibly_damaging(0.517) TCGA-BT-A20P-01 10 75602237 75602237 G C CAMK2G Missense_Mutation p.F294L 0.45 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-BT-A20P-01 10 76855531 76855531 T C DUSP13 Missense_Mutation p.K116E 0.39 tolerated(0.93) benign(0.018) TCGA-BT-A20P-01 10 78799315 78799315 G A KCNMA1 Silent p.F610F 0.35 TCGA-BT-A20P-01 10 93751913 93751913 C A BTAF1 Silent p.V964V 0.47 TCGA-BT-A20P-01 11 10821251 10821251 C G EIF4G2 Silent p.L724L 0.49 TCGA-BT-A20P-01 11 14900872 14900872 T C CYP2R1 Missense_Mutation p.N373S 0.41 deleterious(0.01) possibly_damaging(0.786) TCGA-BT-A20P-01 11 35308446 35308446 C A SLC1A2 Missense_Mutation p.D382Y 0.41 deleterious(0) probably_damaging(1) TCGA-BT-A20P-01 11 59939727 59939727 C G MS4A6A 3'Flank 0.49 TCGA-BT-A20P-01 12 122975027 122975027 G - ZCCHC8 Frame_Shift_Del p.F136Lfs*12 0.32 TCGA-BT-A20P-01 12 15035937 15035937 G A MGP Nonsense_Mutation p.Q72* 0.47 TCGA-BT-A20P-01 12 56088080 56088080 G A ITGA7 Nonsense_Mutation p.R802* 0.60 TCGA-BT-A20P-01 12 6837406 6837406 C G COPS7A Missense_Mutation p.P86A 0.25 tolerated(0.13) possibly_damaging(0.893) TCGA-BT-A20P-01 12 83289890 83289890 C G TMTC2 Missense_Mutation p.F316L 0.25 tolerated(0.31) benign(0.405) TCGA-BT-A20P-01 12 8926379 8926379 G C RIMKLB Nonstop_Mutation p.*387Sext*4 0.47 TCGA-BT-A20P-01 13 113053427 113053427 C A SPACA7 Missense_Mutation p.H97N 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-BT-A20P-01 14 21868445 21868445 C T CHD8 Missense_Mutation p.R1531H 0.34 deleterious(0) probably_damaging(0.991) TCGA-BT-A20P-01 14 35183755 35183755 C T CFL2 5'Flank 0.40 TCGA-BT-A20P-01 15 62201309 62201309 C G VPS13C Missense_Mutation p.V2954L 0.32 deleterious(0.03) possibly_damaging(0.516) TCGA-BT-A20P-01 15 73528817 73528817 C G NEO1 Missense_Mutation p.S474C 0.38 deleterious(0) probably_damaging(0.977) TCGA-BT-A20P-01 15 75562288 75562288 C A GOLGA6C Missense_Mutation p.P639Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BT-A20P-01 15 75942367 75942367 G C SNX33 Silent p.R308R 0.32 TCGA-BT-A20P-01 16 11114144 11114144 C T CLEC16A Silent p.S466S 0.20 TCGA-BT-A20P-01 16 46836943 46836943 G C C16orf87 Missense_Mutation p.S129C 0.41 deleterious(0) possibly_damaging(0.869) TCGA-BT-A20P-01 16 48250187 48250187 G C ABCC11 Missense_Mutation p.F263L 0.50 tolerated(0.36) benign(0.147) TCGA-BT-A20P-01 16 53721797 53721797 C G RPGRIP1L Missense_Mutation p.A204P 0.32 tolerated(0.11) probably_damaging(0.911) TCGA-BT-A20P-01 16 69776441 69776441 G A NOB1 Missense_Mutation p.R345C 0.47 deleterious(0.01) possibly_damaging(0.88) TCGA-BT-A20P-01 16 89869700 89869700 C G FANCA Silent p.L253L 0.46 TCGA-BT-A20P-01 17 10430322 10430322 G C MYH2 Nonsense_Mutation p.S1308* 0.87 TCGA-BT-A20P-01 17 18082089 18082089 G T MYO15A Nonsense_Mutation p.E3500* 0.79 TCGA-BT-A20P-01 17 26943411 26943411 G A KIAA0100 Missense_Mutation p.R2092C 0.24 deleterious(0) probably_damaging(0.976) TCGA-BT-A20P-01 17 29657369 29657369 G A NF1 Missense_Mutation p.E1889K 0.34 deleterious(0) probably_damaging(0.955) TCGA-BT-A20P-01 17 37093420 37093420 C T FBXO47 3'UTR 0.29 TCGA-BT-A20P-01 17 42855099 42855099 G C ADAM11 Silent p.L646L 0.59 TCGA-BT-A20P-01 17 47284179 47284179 G C GNGT2 Silent p.L50L 0.56 TCGA-BT-A20P-01 17 48940623 48940623 T C TOB1 Silent p.P252P 0.07 TCGA-BT-A20P-01 17 67148283 67148283 C G ABCA10 Missense_Mutation p.R1433T 0.34 tolerated(0.12) benign(0.002) TCGA-BT-A20P-01 17 7495957 7495957 C A MPDU1 3'Flank 0.80 TCGA-BT-A20P-01 17 78120641 78120641 G C EIF4A3 Missense_Mutation p.F40L 0.18 deleterious(0) probably_damaging(0.987) TCGA-BT-A20P-01 18 21357556 21357556 G C LAMA3 Missense_Mutation p.E481Q 0.33 possibly_damaging(0.67) TCGA-BT-A20P-01 18 50923757 50923757 C A DCC Missense_Mutation p.T923K 0.05 deleterious(0) probably_damaging(0.968) TCGA-BT-A20P-01 18 50985745 50985745 C A DCC Missense_Mutation p.P1179H 0.47 deleterious(0) probably_damaging(0.999) TCGA-BT-A20P-01 19 15276879 15276879 C A NOTCH3 Missense_Mutation p.A1796S 0.38 deleterious(0) probably_damaging(0.979) TCGA-BT-A20P-01 19 40902836 40902836 C T PRX Missense_Mutation p.E475K 0.38 tolerated(0.78) possibly_damaging(0.486) TCGA-BT-A20P-01 19 40903232 40903232 C T PRX Missense_Mutation p.E343K 0.37 tolerated(0.49) possibly_damaging(0.486) TCGA-BT-A20P-01 19 51535219 51535219 C T KLK12 Missense_Mutation p.V124I 0.37 tolerated(0.18) benign(0.089) TCGA-BT-A20P-01 19 55085555 55085555 G A LILRA2 Missense_Mutation p.G16D 0.34 tolerated(0.21) benign(0.027) TCGA-BT-A20P-01 19 58563891 58563891 G A ZSCAN1 Missense_Mutation p.A167T 0.56 tolerated(0.44) benign(0.157) TCGA-BT-A20P-01 1 110466096 110466096 G A CSF1 Missense_Mutation p.G285R 0.52 tolerated(0.4) benign(0.056) TCGA-BT-A20P-01 1 11561646 11561646 G C PTCHD2 Silent p.R199R 0.50 TCGA-BT-A20P-01 1 159021525 159021525 G A IFI16 Silent p.Q518Q 0.44 TCGA-BT-A20P-01 1 173454533 173454533 G T PRDX6 Nonsense_Mutation p.E96* 0.46 TCGA-BT-A20P-01 1 200967639 200967639 G A KIF21B Silent p.I650I 0.33 TCGA-BT-A20P-01 1 201984365 201984366 - G ELF3 Frame_Shift_Ins p.V345Gfs*126 0.33 TCGA-BT-A20P-01 1 220162081 220162081 G A EPRS Nonsense_Mutation p.Q876* 0.52 TCGA-BT-A20P-01 1 220331158 220331158 G C RAB3GAP2 Missense_Mutation p.Q1108E 0.50 tolerated(0.31) probably_damaging(0.994) TCGA-BT-A20P-01 1 245006464 245006464 A G COX20 Missense_Mutation p.S115G 0.37 tolerated(0.29) benign(0.002) TCGA-BT-A20P-01 1 38197144 38197144 C T EPHA10 Silent p.P534P 0.33 TCGA-BT-A20P-01 1 39818703 39818703 G C MACF1 Missense_Mutation p.E1680Q 0.38 probably_damaging(0.962) TCGA-BT-A20P-01 1 39818900 39818900 G A MACF1 Missense_Mutation p.M1745I 0.45 benign(0.001) TCGA-BT-A20P-01 1 54332522 54332522 C G YIPF1 Missense_Mutation p.R186T 0.43 deleterious(0) probably_damaging(1) TCGA-BT-A20P-01 1 65247172 65247172 G A RAVER2 Missense_Mutation p.G299D 0.41 tolerated(0.05) possibly_damaging(0.808) TCGA-BT-A20P-01 20 29632684 29632684 C G FRG1B Missense_Mutation p.Q167E 0.05 deleterious(0.01) benign(0.156) TCGA-BT-A20P-01 20 44640373 44640373 C A MMP9 Missense_Mutation p.F328L 0.21 deleterious(0.05) benign(0.332) TCGA-BT-A20P-01 20 58439419 58439419 G A SYCP2 Missense_Mutation p.R1514C 0.26 deleterious(0) probably_damaging(0.942) TCGA-BT-A20P-01 20 61428556 61428556 G C MRGBP Silent p.L81L 0.33 TCGA-BT-A20P-01 20 61429948 61429948 G C MRGBP Missense_Mutation p.E94Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-BT-A20P-01 21 19632552 19632552 C G CHODL Missense_Mutation p.L195V 0.36 tolerated(0.66) benign(0.001) TCGA-BT-A20P-01 21 45161607 45161607 G - PDXK Frame_Shift_Del p.G68Afs*2 0.24 TCGA-BT-A20P-01 22 18171756 18171756 C T BCL2L13 Silent p.F78F 0.51 TCGA-BT-A20P-01 22 18293495 18293495 C G MICAL3 Missense_Mutation p.E1844Q 0.48 probably_damaging(0.951) TCGA-BT-A20P-01 22 32266660 32266660 A C DEPDC5 Missense_Mutation p.S1130R 0.31 tolerated_low_confidence(0.2) benign(0.017) TCGA-BT-A20P-01 22 38201996 38201996 A C H1F0 Missense_Mutation p.K149Q 0.56 deleterious(0.04) unknown(0) TCGA-BT-A20P-01 22 42126536 42126536 G C MEI1 Missense_Mutation p.E331Q 0.44 deleterious(0) probably_damaging(0.991) TCGA-BT-A20P-01 2 108626805 108626805 G C SLC5A7 Missense_Mutation p.D411H 0.41 deleterious(0) probably_damaging(0.999) TCGA-BT-A20P-01 2 10924320 10924320 C T PDIA6 3'UTR 0.33 TCGA-BT-A20P-01 2 141457909 141457909 C G LRP1B Missense_Mutation p.G2237R 0.42 probably_damaging(0.953) TCGA-BT-A20P-01 2 179650718 179650718 C T TTN Missense_Mutation p.A743T 0.42 TCGA-BT-A20P-01 2 187694567 187694567 G T ZSWIM2 Missense_Mutation p.L328I 0.39 tolerated(0.09) possibly_damaging(0.549) TCGA-BT-A20P-01 2 201756971 201756971 G A NIF3L1 Missense_Mutation p.R102H 0.05 tolerated(0.15) benign(0.033) TCGA-BT-A20P-01 2 233345140 233345140 G A ECEL1 Silent p.L733L 0.36 TCGA-BT-A20P-01 2 71748031 71748031 G A DYSF Silent p.A382A 0.36 TCGA-BT-A20P-01 3 101085458 101085458 C G SENP7 Missense_Mutation p.L378F 0.46 tolerated(0.35) benign(0.007) TCGA-BT-A20P-01 3 101370486 101370486 C T ZBTB11 Missense_Mutation p.A896T 0.48 tolerated(0.09) probably_damaging(0.998) TCGA-BT-A20P-01 3 127771651 127771651 C G SEC61A1 Intron 0.56 TCGA-BT-A20P-01 3 169482464 169482464 C A ACTRT3 3'Flank 0.64 TCGA-BT-A20P-01 3 184295484 184295484 C T EPHB3 Silent p.N506N 0.46 TCGA-BT-A20P-01 3 49929005 49929005 C A MST1R Nonsense_Mutation p.E1121* 0.51 TCGA-BT-A20P-01 3 52283681 52283681 C G PPM1M Intron 0.39 TCGA-BT-A20P-01 3 5248946 5248946 C A EDEM1 Missense_Mutation p.F442L 0.45 deleterious(0.05) benign(0.398) TCGA-BT-A20P-01 3 5251877 5251877 C G EDEM1 Missense_Mutation p.F509L 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-BT-A20P-01 3 7721860 7721860 G A GRM7 Missense_Mutation p.R859Q 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-BT-A20P-01 4 119644544 119644544 C T SEC24D 3'UTR 0.44 TCGA-BT-A20P-01 4 174254073 174254073 C G HMGB2 Missense_Mutation p.D124H 0.41 deleterious(0) probably_damaging(0.979) TCGA-BT-A20P-01 4 1746708 1746708 G A TACC3 Missense_Mutation p.D829N 0.94 deleterious(0) probably_damaging(1) TCGA-BT-A20P-01 4 77230916 77230916 C T FAM47E-STBD1 Silent p.F280F 0.46 TCGA-BT-A20P-01 5 132100049 132100049 C T SEPT8 Missense_Mutation p.E72K 0.67 tolerated(0.54) probably_damaging(0.999) TCGA-BT-A20P-01 5 135273129 135273129 G C FBXL21 RNA 0.24 TCGA-BT-A20P-01 5 140306671 140306671 A G PCDHAC1 Missense_Mutation p.Y65C 0.70 deleterious(0) probably_damaging(0.998) TCGA-BT-A20P-01 5 95158370 95158370 G A GLRX 5'UTR 0.47 TCGA-BT-A20P-01 6 117053364 117053364 C G KPNA5 Missense_Mutation p.L500V 0.45 deleterious(0.02) probably_damaging(0.973) TCGA-BT-A20P-01 6 25727255 25727255 C G HIST1H2BA Missense_Mutation p.S40C 0.65 deleterious_low_confidence(0.02) benign(0.063) TCGA-BT-A20P-01 6 29556637 29556637 G C OR2H2 Missense_Mutation p.E306Q 0.39 tolerated(0.13) benign(0.003) TCGA-BT-A20P-01 6 29913231 29913231 G T HLA-A Nonstop_Mutation p.*366Lext*8 0.28 TCGA-BT-A20P-01 6 31597445 31597445 C A PRRC2A Missense_Mutation p.P693T 0.38 possibly_damaging(0.641) TCGA-BT-A20P-01 6 75884895 75884895 G T COL12A1 Missense_Mutation p.Q857K 0.40 benign(0.003) TCGA-BT-A20P-01 7 111379265 111379265 G T DOCK4 Silent p.S1710S 0.08 TCGA-BT-A20P-01 7 90895308 90895308 C T FZD1 Silent p.A371A 0.31 TCGA-BT-A20P-01 8 142151335 142151335 C T DENND3 Missense_Mutation p.R99W 0.08 tolerated(0.27) benign(0) TCGA-BT-A20P-01 8 18080042 18080042 C G NAT1 Missense_Mutation p.D224E 0.41 tolerated(1) benign(0.006) TCGA-BT-A20P-01 9 115936807 115936807 C G FKBP15 Missense_Mutation p.E760D 0.79 tolerated(0.06) probably_damaging(0.996) TCGA-BT-A20P-01 9 117083 117083 C G FOXD4 Missense_Mutation p.G346A 0.19 tolerated(0.69) benign(0.039) TCGA-BT-A20P-01 9 117113215 117113215 C A AKNA Missense_Mutation p.A1049S 0.13 tolerated(0.16) benign(0.172) TCGA-BT-A20P-01 9 120475702 120475702 C T TLR4 Silent p.S432S 0.77 TCGA-BT-A20P-01 9 125642530 125642530 C G RC3H2 Intron 0.81 TCGA-BT-A20P-01 9 133499065 133499065 G T FUBP3 Silent p.A314A 0.83 TCGA-BT-A20P-01 9 135781358 135781358 A T TSC1 Nonsense_Mutation p.L536* 0.80 TCGA-BT-A20P-01 9 15510198 15510198 G A PSIP1 5'UTR 0.46 TCGA-BT-A20P-01 9 38396624 38396624 C T ALDH1B1 Silent p.I293I 0.43 TCGA-BT-A20P-01 X 101910483 101910483 G C GPRASP1 Missense_Mutation p.E548Q 0.82 tolerated(0.13) possibly_damaging(0.782) TCGA-BT-A20P-01 X 140953305 140953305 C A MAGEC3 Missense_Mutation p.H58N 0.49 deleterious_low_confidence(0) benign(0.107) TCGA-BT-A20P-01 X 54259293 54259293 G A WNK3 Nonsense_Mutation p.R1597* 0.53 TCGA-BT-A20P-01 X 8995957 8995957 C T FAM9B Silent p.R148R 0.42 TCGA-BT-A20Q-01 10 135350733 135350733 C T CYP2E1 Silent p.F378F 0.41 TCGA-BT-A20Q-01 10 22616891 22616891 C G BMI1 Missense_Mutation p.S110C 0.19 deleterious(0.02) benign(0.288) TCGA-BT-A20Q-01 10 23321935 23321935 C T ARMC3 Nonsense_Mutation p.R798* 0.33 TCGA-BT-A20Q-01 10 43701441 43701441 C T RASGEF1A Missense_Mutation p.D42N 0.43 deleterious(0.04) benign(0.026) TCGA-BT-A20Q-01 10 51974561 51974561 C T ASAH2 Missense_Mutation p.R361H 0.38 tolerated(1) benign(0.001) TCGA-BT-A20Q-01 10 74034918 74034918 C T DDIT4 Missense_Mutation p.S224L 0.33 deleterious(0) probably_damaging(0.996) TCGA-BT-A20Q-01 10 94836820 94836820 G A CYP26A1 Missense_Mutation p.R418Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-BT-A20Q-01 11 105880796 105880796 T C MSANTD4 Missense_Mutation p.I168M 0.37 tolerated(0.16) benign(0.006) TCGA-BT-A20Q-01 11 118374132 118374132 G A KMT2A Missense_Mutation p.E2509K 0.28 possibly_damaging(0.872) TCGA-BT-A20Q-01 11 118374590 118374590 G C KMT2A Missense_Mutation p.K2661N 0.23 probably_damaging(0.996) TCGA-BT-A20Q-01 11 118375131 118375131 G A KMT2A Missense_Mutation p.D2842N 0.28 probably_damaging(0.995) TCGA-BT-A20Q-01 11 61727388 61727388 A G BEST1 Missense_Mutation p.M265V 0.22 deleterious(0.03) probably_damaging(0.995) TCGA-BT-A20Q-01 11 6413286 6413286 C T SMPD1 Missense_Mutation p.P331S 0.36 deleterious(0) probably_damaging(0.998) TCGA-BT-A20Q-01 11 66359214 66359214 G A CCDC87 Missense_Mutation p.H425Y 0.30 tolerated(0.11) benign(0.002) TCGA-BT-A20Q-01 11 7949563 7949563 A G OR10A6 Missense_Mutation p.L216S 0.29 tolerated(0.31) benign(0.213) TCGA-BT-A20Q-01 12 44124323 44124323 T C PUS7L Silent p.Q654Q 0.27 TCGA-BT-A20Q-01 12 51868160 51868160 C T SLC4A8 Missense_Mutation p.H647Y 0.18 tolerated(0.06) benign(0.212) TCGA-BT-A20Q-01 12 51868256 51868256 C G SLC4A8 Intron 0.20 TCGA-BT-A20Q-01 13 77743819 77743819 G A MYCBP2 Missense_Mutation p.S1904F 0.20 probably_damaging(0.951) TCGA-BT-A20Q-01 14 60212834 60212834 C T RTN1 Missense_Mutation p.E203K 0.33 deleterious(0.01) benign(0.015) TCGA-BT-A20Q-01 15 25470410 25470410 C T SNORD115-30 RNA 0.30 TCGA-BT-A20Q-01 15 64446590 64446590 G C SNX22 Silent p.S155S 0.14 TCGA-BT-A20Q-01 15 75941596 75941596 T G SNX33 Missense_Mutation p.F51L 0.26 tolerated(0.08) benign(0.396) TCGA-BT-A20Q-01 16 12758794 12758794 C G CPPED1 Silent p.L298L 0.37 TCGA-BT-A20Q-01 16 1616196 1616196 C G IFT140 Missense_Mutation p.E623Q 0.29 tolerated(0.07) benign(0.015) TCGA-BT-A20Q-01 16 19726111 19726111 C G KNOP1 Missense_Mutation p.E83Q 0.30 deleterious(0.05) benign(0.07) TCGA-BT-A20Q-01 16 2510687 2510687 C T C16orf59 Silent p.P63P 0.40 TCGA-BT-A20Q-01 16 53272307 53272307 A G CHD9 Missense_Mutation p.I896V 0.37 benign(0.397) TCGA-BT-A20Q-01 16 72110371 72110371 C G HPR Silent p.L146L 0.29 TCGA-BT-A20Q-01 17 16022773 16022773 G A NCOR1 Nonsense_Mutation p.R627* 0.46 TCGA-BT-A20Q-01 17 19216560 19216560 C A EPN2 Missense_Mutation p.P372H 0.34 deleterious(0) possibly_damaging(0.572) TCGA-BT-A20Q-01 17 19319463 19319463 G A RNF112 Missense_Mutation p.R624Q 0.26 tolerated_low_confidence(0.24) unknown(0) TCGA-BT-A20Q-01 17 39567602 39567602 C A AC003958.2 RNA 0.31 TCGA-BT-A20Q-01 17 42289089 42289089 T G UBTF Missense_Mutation p.E311A 0.18 deleterious(0.03) probably_damaging(1) TCGA-BT-A20Q-01 17 44109507 44109507 G C KANSL1 Nonsense_Mutation p.S999* 0.16 TCGA-BT-A20Q-01 17 48275121 48275121 G C COL1A1 Missense_Mutation p.P223R 0.21 unknown(0) TCGA-BT-A20Q-01 17 7162148 7162148 G A ELP5 Missense_Mutation p.D247N 0.49 deleterious(0) probably_damaging(0.981) TCGA-BT-A20Q-01 17 7162193 7162193 G C ELP5 Missense_Mutation p.E262Q 0.42 deleterious(0.03) probably_damaging(0.991) TCGA-BT-A20Q-01 18 51818253 51818253 C T POLI Nonsense_Mutation p.R417* 0.19 TCGA-BT-A20Q-01 18 70502500 70502500 G A NETO1 Intron 0.28 TCGA-BT-A20Q-01 18 74091604 74091604 G A ZNF516 Silent p.L822L 0.30 TCGA-BT-A20Q-01 19 19737749 19737749 G A LPAR2 Silent p.L115L 0.50 TCGA-BT-A20Q-01 19 38229523 38229523 G C ZNF573 Nonsense_Mutation p.S623* 0.37 TCGA-BT-A20Q-01 19 49713574 49713574 C T TRPM4 Silent p.I1080I 0.39 TCGA-BT-A20Q-01 19 55329821 55329821 G A KIR3DL1 Missense_Mutation p.R41Q 0.41 tolerated(0.8) benign(0.001) TCGA-BT-A20Q-01 19 56466176 56466176 C T NLRP8 Missense_Mutation p.T251M 0.33 tolerated(0.11) benign(0.025) TCGA-BT-A20Q-01 19 8046039 8046039 G A ELAVL1 Silent p.Y68Y 0.22 TCGA-BT-A20Q-01 1 100920981 100920981 C T CDC14A Silent p.F180F 0.39 TCGA-BT-A20Q-01 1 116670903 116670903 G A MAB21L3 Silent p.L266L 0.14 TCGA-BT-A20Q-01 1 12422812 12422812 A T VPS13D Missense_Mutation p.D3393V 0.32 possibly_damaging(0.881) TCGA-BT-A20Q-01 1 144923818 144923818 T C PDE4DIP Missense_Mutation p.M214V 0.15 tolerated(0.47) benign(0.001) TCGA-BT-A20Q-01 1 150974829 150974829 C G FAM63A Missense_Mutation p.E137Q 0.37 tolerated_low_confidence(0.06) benign(0.076) TCGA-BT-A20Q-01 1 156503868 156503868 G C IQGAP3 Nonsense_Mutation p.S1269* 0.37 TCGA-BT-A20Q-01 1 156563648 156563648 C G APOA1BP Intron 0.29 TCGA-BT-A20Q-01 1 161968053 161968053 T A OLFML2B Missense_Mutation p.T346S 0.26 tolerated(0.41) benign(0.004) TCGA-BT-A20Q-01 1 16721628 16721628 G A SZRD1 Missense_Mutation p.R151H 0.23 tolerated(0.35) benign(0.003) TCGA-BT-A20Q-01 1 16918403 16918403 G C NBPF1 Silent p.L38L 0.06 TCGA-BT-A20Q-01 1 173176222 173176222 G A TNFSF4 Nonsense_Mutation p.Q32* 0.26 TCGA-BT-A20Q-01 1 186113383 186113383 G A HMCN1 Missense_Mutation p.R4668K 0.26 benign(0.102) TCGA-BT-A20Q-01 1 186324850 186324850 T C TPR Missense_Mutation p.T647A 0.35 benign(0.217) TCGA-BT-A20Q-01 1 19441918 19441918 C T UBR4 Silent p.E3679E 0.32 TCGA-BT-A20Q-01 1 201060841 201060841 G C CACNA1S Silent p.V207V 0.22 TCGA-BT-A20Q-01 1 201981870 201981871 - T ELF3 Frame_Shift_Ins p.D195* 0.33 TCGA-BT-A20Q-01 1 202124738 202124738 C T PTPN7 Splice_Site p.X236_splice 0.29 TCGA-BT-A20Q-01 1 207300089 207300089 T A C4BPA Missense_Mutation p.H246Q 0.28 tolerated(0.08) possibly_damaging(0.856) TCGA-BT-A20Q-01 1 214557171 214557171 G A PTPN14 Missense_Mutation p.P676L 0.35 tolerated(0.07) benign(0.079) TCGA-BT-A20Q-01 1 226252162 226252162 A G H3F3A Missense_Mutation p.K37R 0.23 deleterious_low_confidence(0.01) benign(0.006) TCGA-BT-A20Q-01 1 227071519 227071519 G A PSEN2 Silent p.A85A 0.26 TCGA-BT-A20Q-01 1 231696991 231696995 AAAAT - TSNAX Frame_Shift_Del p.K164Sfs*4 0.29 TCGA-BT-A20Q-01 1 27099094 27099097 CAGT - ARID1A Frame_Shift_Del p.S1171Rfs*8 0.31 TCGA-BT-A20Q-01 1 40214727 40214727 G A PPIE Missense_Mutation p.D221N 0.50 deleterious(0.05) probably_damaging(0.999) TCGA-BT-A20Q-01 20 16719531 16719531 C G SNRPB2 Nonsense_Mutation p.S138* 0.26 TCGA-BT-A20Q-01 20 34051427 34051427 G C CEP250 Missense_Mutation p.E72Q 0.16 possibly_damaging(0.877) TCGA-BT-A20Q-01 21 40604198 40604198 G A BRWD1 Nonsense_Mutation p.R969* 0.15 TCGA-BT-A20Q-01 22 23465561 23465561 C T GNAZ Silent p.F337F 0.47 TCGA-BT-A20Q-01 22 50687787 50687787 G A HDAC10 Silent p.L220L 0.45 TCGA-BT-A20Q-01 2 133174772 133174772 C T GPR39 Missense_Mutation p.R53W 0.37 tolerated(0.07) probably_damaging(0.949) TCGA-BT-A20Q-01 2 141272335 141272335 G T LRP1B Missense_Mutation p.S2719Y 0.33 possibly_damaging(0.86) TCGA-BT-A20Q-01 2 163174805 163174806 - CC IFIH1 Frame_Shift_Ins p.Y5Gfs*19 0.18 TCGA-BT-A20Q-01 2 174783487 174783487 C T SP3 Missense_Mutation p.D556N 0.30 tolerated(0.08) probably_damaging(0.98) TCGA-BT-A20Q-01 2 179638034 179638034 C G TTN Missense_Mutation p.E2553Q 0.35 TCGA-BT-A20Q-01 2 189953486 189953486 G C COL5A2 Missense_Mutation p.Q194E 0.25 possibly_damaging(0.759) TCGA-BT-A20Q-01 2 190593544 190593544 A G ANKAR Missense_Mutation p.I1064V 0.37 tolerated(0.53) benign(0.005) TCGA-BT-A20Q-01 2 197639909 197639909 G C GTF3C3 Missense_Mutation p.L588V 0.28 deleterious(0.05) benign(0.353) TCGA-BT-A20Q-01 2 68480214 68480214 G A PPP3R1 5'Flank 0.46 TCGA-BT-A20Q-01 2 85785670 85785670 C T GGCX Silent p.L144L 0.35 TCGA-BT-A20Q-01 3 153840100 153840100 C G ARHGEF26 Missense_Mutation p.R107G 0.22 tolerated_low_confidence(0.18) benign(0.003) TCGA-BT-A20Q-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-BT-A20Q-01 3 184557485 184557485 G A VPS8 Splice_Site p.X161_splice 0.35 TCGA-BT-A20Q-01 3 195794923 195794923 C T TFRC Missense_Mutation p.E294K 0.16 tolerated(0.15) benign(0.002) TCGA-BT-A20Q-01 3 49249260 49249260 C A CCDC36 Nonsense_Mutation p.S16* 0.26 TCGA-BT-A20Q-01 3 49249266 49249266 C T CCDC36 Missense_Mutation p.S18F 0.24 deleterious(0) probably_damaging(0.971) TCGA-BT-A20Q-01 3 51393912 51393912 G C DOCK3 Missense_Mutation p.E1497D 0.24 tolerated(0.34) benign(0.015) TCGA-BT-A20Q-01 3 56787589 56787589 G C ARHGEF3 Missense_Mutation p.I159M 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-BT-A20Q-01 3 93761880 93761880 G C ARL13B Missense_Mutation p.E274Q 0.29 tolerated(0.11) benign(0.094) TCGA-BT-A20Q-01 4 106156496 106156496 C G TET2 Missense_Mutation p.S466C 0.24 deleterious(0) possibly_damaging(0.778) TCGA-BT-A20Q-01 4 106156625 106156625 C G TET2 Nonsense_Mutation p.S509* 0.21 TCGA-BT-A20Q-01 4 160253617 160253617 C T RAPGEF2 Silent p.L474L 0.30 TCGA-BT-A20Q-01 4 166414359 166414359 C T CPE Nonsense_Mutation p.Q384* 0.28 TCGA-BT-A20Q-01 4 186334999 186334999 G T UFSP2 Missense_Mutation p.H238N 0.45 tolerated(0.63) benign(0.001) TCGA-BT-A20Q-01 4 40356611 40356611 G C CHRNA9 3'UTR 0.29 TCGA-BT-A20Q-01 4 40356674 40356674 G C CHRNA9 3'UTR 0.54 TCGA-BT-A20Q-01 4 8288305 8288305 G A HTRA3 Missense_Mutation p.R168H 0.21 deleterious(0.02) benign(0.02) TCGA-BT-A20Q-01 4 99982412 99982412 G C METAP1 Missense_Mutation p.E369Q 0.30 deleterious(0.01) benign(0.264) TCGA-BT-A20Q-01 5 148754143 148754143 C T IL17B Missense_Mutation p.R111H 0.21 deleterious(0) probably_damaging(0.995) TCGA-BT-A20Q-01 5 150028061 150028061 C T SYNPO Missense_Mutation p.S319L 0.32 deleterious(0.01) benign(0.089) TCGA-BT-A20Q-01 5 158526496 158526496 C T EBF1 5'UTR 0.33 TCGA-BT-A20Q-01 5 36985880 36985880 A G NIPBL Silent p.L866L 0.41 TCGA-BT-A20Q-01 6 129691106 129691106 G A LAMA2 Missense_Mutation p.V1644M 0.48 deleterious(0.03) benign(0.409) TCGA-BT-A20Q-01 6 152668238 152668238 C T SYNE1 Missense_Mutation p.G4012S 0.22 probably_damaging(0.917) TCGA-BT-A20Q-01 6 161007642 161007642 C T LPA Missense_Mutation p.C1323Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-BT-A20Q-01 6 27841112 27841114 AAG - HIST1H4L In_Frame_Del p.L59del 0.26 TCGA-BT-A20Q-01 6 30653297 30653297 G T PPP1R18 Missense_Mutation p.L167M 0.34 deleterious_low_confidence(0.04) benign(0.348) TCGA-BT-A20Q-01 6 32148014 32148014 C T RNF5 Silent p.L152L 0.32 TCGA-BT-A20Q-01 6 71665793 71665793 T C B3GAT2 Missense_Mutation p.I114V 0.28 tolerated(0.15) benign(0.016) TCGA-BT-A20Q-01 7 130370187 130370187 C G TSGA13 5'UTR 0.22 TCGA-BT-A20Q-01 7 139636073 139636073 G A TBXAS1 Silent p.L140L 0.33 TCGA-BT-A20Q-01 7 149129112 149129112 C T ZNF777 Missense_Mutation p.A751T 0.36 tolerated(0.25) benign(0.203) TCGA-BT-A20Q-01 7 30721547 30721547 G C CRHR2 Silent p.V98V 0.39 TCGA-BT-A20Q-01 7 56022649 56022649 G A MRPS17 Silent p.Q57Q 0.29 TCGA-BT-A20Q-01 8 3326258 3326258 G A CSMD1 Missense_Mutation p.P513S 0.41 benign(0.059) TCGA-BT-A20Q-01 9 114152334 114152334 A C KIAA0368 Missense_Mutation p.L1248R 0.43 deleterious(0) probably_damaging(1) TCGA-BT-A20Q-01 9 96320268 96320268 C T FAM120A Nonsense_Mutation p.Q882* 0.71 TCGA-BT-A20Q-01 X 102612724 102612724 G A WBP5 Missense_Mutation p.E38K 0.62 tolerated(0.34) benign(0.142) TCGA-BT-A20Q-01 X 14891637 14891637 C T MOSPD2 5'UTR 0.47 TCGA-BT-A20Q-01 X 153049816 153049816 C T SRPK3 Silent p.I405I 0.53 TCGA-BT-A20Q-01 X 70331308 70331308 G C IL2RG Missense_Mutation p.L28V 0.57 deleterious_low_confidence(0.03) benign(0.126) TCGA-BT-A20R-01 10 120795652 120795652 C T EIF3A Missense_Mutation p.E1350K 0.26 tolerated_low_confidence(0.09) unknown(0) TCGA-BT-A20R-01 10 135098627 135098627 G A TUBGCP2 Silent p.N690N 0.14 TCGA-BT-A20R-01 10 22616526 22616526 C G BMI1 Nonsense_Mutation p.S71* 0.09 TCGA-BT-A20R-01 10 33619671 33619671 G C NRP1 Missense_Mutation p.F71L 0.17 deleterious(0) probably_damaging(0.999) TCGA-BT-A20R-01 10 46967671 46967671 C T SYT15 Missense_Mutation p.E136K 0.09 deleterious(0.01) possibly_damaging(0.899) TCGA-BT-A20R-01 10 55581860 55581860 G C PCDH15 Missense_Mutation p.Q1878E 0.46 deleterious_low_confidence(0.02) unknown(0) TCGA-BT-A20R-01 10 5691004 5691004 T C ASB13 Missense_Mutation p.H149R 0.22 deleterious(0) probably_damaging(0.968) TCGA-BT-A20R-01 10 58118398 58118398 A T ZWINT Missense_Mutation p.D237E 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-BT-A20R-01 10 70940047 70940047 G C SUPV3L1 5'UTR 0.10 TCGA-BT-A20R-01 10 74879774 74879774 A C NUDT13 Splice_Site p.X28_splice 0.11 TCGA-BT-A20R-01 10 94834560 94834560 G A CYP26A1 Missense_Mutation p.E147K 0.41 tolerated(0.2) benign(0.426) TCGA-BT-A20R-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.40 TCGA-BT-A20R-01 11 1491480 1491480 G A MOB2 Silent p.G243G 0.26 TCGA-BT-A20R-01 11 22647304 22647304 G C FANCF Nonsense_Mutation p.S18* 0.14 TCGA-BT-A20R-01 11 431718 431718 C T ANO9 Missense_Mutation p.R172Q 0.22 tolerated(0.79) benign(0.001) TCGA-BT-A20R-01 11 4790533 4790533 G A OR51F1 Silent p.L205L 0.20 TCGA-BT-A20R-01 11 6232852 6232852 G C FAM160A2 Missense_Mutation p.L949V 0.18 deleterious(0) possibly_damaging(0.834) TCGA-BT-A20R-01 11 62435136 62435136 C G C11orf48 Missense_Mutation p.E133Q 0.04 tolerated_low_confidence(1) benign(0.001) TCGA-BT-A20R-01 11 62521497 62521497 G A ZBTB3 Missense_Mutation p.S13L 0.12 tolerated_low_confidence(0.06) benign(0.003) TCGA-BT-A20R-01 11 6432324 6432324 C T APBB1 Missense_Mutation p.R85H 0.17 deleterious(0.01) benign(0.12) TCGA-BT-A20R-01 11 64359356 64359356 G A SLC22A12 Missense_Mutation p.E110K 0.13 tolerated(0.13) benign(0.004) TCGA-BT-A20R-01 11 65055264 65055264 G A POLA2 Missense_Mutation p.D362N 0.06 deleterious(0) probably_damaging(0.987) TCGA-BT-A20R-01 11 65063047 65063047 C G POLA2 Silent p.L499L 0.07 TCGA-BT-A20R-01 11 65168229 65168229 C T FRMD8 Missense_Mutation p.S321L 0.15 deleterious(0) possibly_damaging(0.564) TCGA-BT-A20R-01 11 66100213 66100213 C T RIN1 Missense_Mutation p.R629Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20R-01 11 6816130 6816130 G C OR6A2 Silent p.L270L 0.14 TCGA-BT-A20R-01 11 71946359 71946359 C G INPPL1 Silent p.L841L 0.16 TCGA-BT-A20R-01 11 71949157 71949157 C G INPPL1 Missense_Mutation p.I1208M 0.12 deleterious(0.01) benign(0.029) TCGA-BT-A20R-01 11 72396553 72396553 G T ARAP1 3'UTR 0.46 TCGA-BT-A20R-01 11 72469670 72469670 G C STARD10 Missense_Mutation p.P122A 0.13 deleterious(0.02) probably_damaging(1) TCGA-BT-A20R-01 11 76257114 76257114 G A C11orf30 Missense_Mutation p.E1183K 0.22 deleterious_low_confidence(0.05) benign(0.014) TCGA-BT-A20R-01 11 92523337 92523337 G A FAT3 Missense_Mutation p.E1522K 0.14 possibly_damaging(0.557) TCGA-BT-A20R-01 12 101686964 101686964 G A UTP20 Missense_Mutation p.E398K 0.23 tolerated(0.49) benign(0.013) TCGA-BT-A20R-01 12 102455053 102455053 G A CCDC53 Silent p.L41L 0.27 TCGA-BT-A20R-01 12 104071314 104071314 G C STAB2 Missense_Mutation p.E910D 0.27 tolerated(0.12) possibly_damaging(0.622) TCGA-BT-A20R-01 12 122091125 122091125 C T MORN3 Missense_Mutation p.M168I 0.15 tolerated(0.33) benign(0.027) TCGA-BT-A20R-01 12 123187019 123187019 G A HCAR2 Missense_Mutation p.S271L 0.09 deleterious(0.02) benign(0.252) TCGA-BT-A20R-01 12 14927359 14927359 G C H2AFJ 5'UTR 0.27 TCGA-BT-A20R-01 12 27844717 27844717 G A PPFIBP1 Silent p.L913L 0.14 TCGA-BT-A20R-01 12 2797760 2797760 G A CACNA1C Missense_Mutation p.E2026K 0.18 tolerated_low_confidence(0.34) benign(0.025) TCGA-BT-A20R-01 12 41587902 41587902 C T PDZRN4 Missense_Mutation p.S252L 0.12 deleterious_low_confidence(0.02) benign(0.092) TCGA-BT-A20R-01 12 4553375 4553375 C T FGF6 Missense_Mutation p.R125Q 0.20 tolerated(0.26) benign(0.003) TCGA-BT-A20R-01 12 56478817 56478817 G C ERBB3 Missense_Mutation p.M91I 0.28 tolerated(0.23) benign(0.082) TCGA-BT-A20R-01 12 56531825 56531825 C A ESYT1 Silent p.L748L 0.28 TCGA-BT-A20R-01 12 57556275 57556275 G A LRP1 Missense_Mutation p.R793Q 0.08 possibly_damaging(0.852) TCGA-BT-A20R-01 12 70970178 70970178 G A PTPRB Silent p.F942F 0.16 TCGA-BT-A20R-01 12 76447602 76447602 C G NAP1L1 Missense_Mutation p.D240H 0.33 deleterious(0.03) possibly_damaging(0.576) TCGA-BT-A20R-01 12 9353646 9353646 C G PZP Missense_Mutation p.R171T 0.18 tolerated(0.41) benign(0.419) TCGA-BT-A20R-01 12 96104265 96104265 G C NTN4 Missense_Mutation p.F378L 0.18 deleterious(0.02) benign(0.262) TCGA-BT-A20R-01 13 103450976 103450976 A C KDELC1 Silent p.V15V 0.20 TCGA-BT-A20R-01 13 25428222 25428222 G C RNF17 Missense_Mutation p.E1184Q 0.13 tolerated(0.74) possibly_damaging(0.868) TCGA-BT-A20R-01 13 48881462 48881462 C T RB1 Nonsense_Mutation p.Q62* 0.18 TCGA-BT-A20R-01 13 79219061 79219061 A G RNF219 Silent p.N48N 0.23 TCGA-BT-A20R-01 13 79939829 79939829 T C RBM26 Missense_Mutation p.N434S 0.10 deleterious(0) probably_damaging(0.997) TCGA-BT-A20R-01 14 100795778 100795778 C G SLC25A47 Missense_Mutation p.I241M 0.13 deleterious(0.03) probably_damaging(0.98) TCGA-BT-A20R-01 14 102695599 102695599 C A MOK 3'UTR 0.21 TCGA-BT-A20R-01 14 105688029 105688029 G A BRF1 Missense_Mutation p.S424L 0.22 deleterious(0.03) benign(0.03) TCGA-BT-A20R-01 14 19378304 19378304 G A OR11H12 Silent p.L237L 0.08 TCGA-BT-A20R-01 14 20528789 20528789 G A OR4L1 Missense_Mutation p.E196K 0.41 deleterious(0.04) probably_damaging(0.964) TCGA-BT-A20R-01 14 22471622 22471622 A T TRAV18 Splice_Site p.X16_splice 0.24 TCGA-BT-A20R-01 14 23299420 23299420 C T MRPL52 Silent p.S38S 0.22 TCGA-BT-A20R-01 14 68265271 68265271 G C ZFYVE26 Missense_Mutation p.L570V 0.10 tolerated(0.06) benign(0.146) TCGA-BT-A20R-01 14 68273295 68273295 C G ZFYVE26 Silent p.L328L 0.16 TCGA-BT-A20R-01 14 69257106 69257106 G C ZFP36L1 Nonsense_Mutation p.S54* 0.30 TCGA-BT-A20R-01 14 71137855 71137855 G C TTC9 Missense_Mutation p.E218Q 0.19 tolerated(0.07) benign(0.037) TCGA-BT-A20R-01 14 88945434 88945434 C T PTPN21 Missense_Mutation p.A781T 0.11 tolerated_low_confidence(0.68) benign(0.001) TCGA-BT-A20R-01 14 90442142 90442142 G A TDP1 Silent p.A258A 0.15 TCGA-BT-A20R-01 15 40993283 40993283 G A RAD51 Missense_Mutation p.D37N 0.17 deleterious(0) probably_damaging(0.98) TCGA-BT-A20R-01 15 41071455 41071455 C G DNAJC17 Missense_Mutation p.Q87H 0.12 deleterious(0.04) benign(0.021) TCGA-BT-A20R-01 15 41272569 41272569 G A INO80 Missense_Mutation p.S1508L 0.15 tolerated_low_confidence(0.22) benign(0.01) TCGA-BT-A20R-01 15 42632035 42632035 G C GANC Missense_Mutation p.R671T 0.12 possibly_damaging(0.735) TCGA-BT-A20R-01 15 51758502 51758502 G C DMXL2 Missense_Mutation p.L2467V 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-BT-A20R-01 15 52017042 52017042 C T LYSMD2 Missense_Mutation p.D184N 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 15 59123984 59123984 G C FAM63B Missense_Mutation p.E413Q 0.08 tolerated(0.07) probably_damaging(0.997) TCGA-BT-A20R-01 15 62944237 62944237 C G TLN2 Missense_Mutation p.Q90E 0.21 deleterious(0) benign(0.103) TCGA-BT-A20R-01 15 63930948 63930948 C G HERC1 Missense_Mutation p.D3977H 0.04 probably_damaging(0.999) TCGA-BT-A20R-01 15 74912356 74912356 C T CLK3 Silent p.D201D 0.21 TCGA-BT-A20R-01 15 74927826 74927826 G C EDC3 Silent p.V372V 0.12 TCGA-BT-A20R-01 15 88476307 88476307 C T NTRK3 Missense_Mutation p.D609N 0.11 deleterious(0) probably_damaging(0.979) TCGA-BT-A20R-01 15 89155074 89155074 G A MIR7-2 RNA 0.23 TCGA-BT-A20R-01 16 15045813 15045813 C G NPIPA1 Silent p.L328L 0.07 TCGA-BT-A20R-01 16 28997739 28997739 G A LAT Silent p.T130T 0.31 TCGA-BT-A20R-01 16 29676187 29676187 G A SPN Missense_Mutation p.E380K 0.21 tolerated(0.23) possibly_damaging(0.801) TCGA-BT-A20R-01 16 30199708 30199708 C A CORO1A Nonsense_Mutation p.Y364* 0.25 TCGA-BT-A20R-01 16 3367907 3367907 C T ZNF75A 3'UTR 0.45 TCGA-BT-A20R-01 16 339472 339472 G C AXIN1 Missense_Mutation p.F810L 0.20 deleterious(0) possibly_damaging(0.874) TCGA-BT-A20R-01 16 4563773 4563773 C G CDIP1 Missense_Mutation p.E55D 0.21 tolerated(0.24) possibly_damaging(0.636) TCGA-BT-A20R-01 16 46958298 46958298 C G GPT2 Intron 0.24 TCGA-BT-A20R-01 16 56385394 56385394 C G GNAO1 3'Flank 0.08 TCGA-BT-A20R-01 16 57059987 57059987 C A NLRC5 Missense_Mutation p.H378N 0.14 tolerated(0.13) benign(0.038) TCGA-BT-A20R-01 16 66950200 66950200 C T CDH16 Missense_Mutation p.E88K 0.15 tolerated(0.64) benign(0.14) TCGA-BT-A20R-01 16 71701149 71701149 G C PHLPP2 Silent p.L572L 0.08 TCGA-BT-A20R-01 17 10209797 10209797 C A MYH13 Missense_Mutation p.Q1815H 0.09 deleterious(0.04) benign(0.347) TCGA-BT-A20R-01 17 2605236 2605236 C G CLUH Silent p.L159L 0.13 TCGA-BT-A20R-01 17 26879509 26879509 G A UNC119 Nonsense_Mutation p.Q23* 0.25 TCGA-BT-A20R-01 17 27889496 27889496 C T ABHD15 3'UTR 0.14 TCGA-BT-A20R-01 17 28749923 28749923 G C CPD Missense_Mutation p.L513F 0.34 deleterious(0) probably_damaging(0.991) TCGA-BT-A20R-01 17 29632630 29632630 C T EVI2B 5'UTR 0.18 TCGA-BT-A20R-01 17 30807593 30807593 C T PSMD11 Nonsense_Mutation p.Q405* 0.05 TCGA-BT-A20R-01 17 39155791 39155791 G C KRTAP3-2 3'UTR 0.06 TCGA-BT-A20R-01 17 41329983 41329983 C G NBR1 Missense_Mutation p.Q45E 0.09 deleterious(0) probably_damaging(0.999) TCGA-BT-A20R-01 17 41907106 41907106 G A MPP3 Silent p.L119L 0.18 TCGA-BT-A20R-01 17 42255693 42255693 C G ASB16 Missense_Mutation p.R433G 0.29 tolerated(0.1) benign(0.094) TCGA-BT-A20R-01 17 42936546 42936546 C G EFTUD2 Missense_Mutation p.E622Q 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 17 43473589 43473589 G - ARHGAP27 Frame_Shift_Del p.Y405Ifs*26 0.25 TCGA-BT-A20R-01 17 4461953 4461953 C T GGT6 Missense_Mutation p.G280E 0.75 tolerated(0.68) benign(0.016) TCGA-BT-A20R-01 17 48154740 48154740 C T ITGA3 Intron 0.14 TCGA-BT-A20R-01 17 5365687 5365687 C T DHX33 Silent p.V210V 0.66 TCGA-BT-A20R-01 17 56690847 56690847 C G TEX14 Missense_Mutation p.E320Q 0.35 deleterious(0.03) benign(0.261) TCGA-BT-A20R-01 17 57917167 57917167 C T VMP1 Silent p.V372V 0.14 TCGA-BT-A20R-01 17 59490104 59490104 G A C17orf82 3'UTR 0.17 TCGA-BT-A20R-01 17 60683562 60683562 C T TLK2 Missense_Mutation p.S644L 0.09 deleterious(0) probably_damaging(0.927) TCGA-BT-A20R-01 17 61787963 61787963 C G STRADA Missense_Mutation p.D157H 0.14 tolerated(0.14) probably_damaging(1) TCGA-BT-A20R-01 17 61995219 61995219 G A GH1 Silent p.L119L 0.12 TCGA-BT-A20R-01 17 64880683 64880683 G A CACNG5 Missense_Mutation p.E159K 0.12 tolerated(0.13) possibly_damaging(0.794) TCGA-BT-A20R-01 17 66872823 66872823 C T ABCA8 Silent p.L1367L 0.22 TCGA-BT-A20R-01 17 72845996 72845996 G T GRIN2C Missense_Mutation p.S523Y 0.25 deleterious(0) probably_damaging(0.99) TCGA-BT-A20R-01 17 72846001 72846001 G A GRIN2C Silent p.D521D 0.29 TCGA-BT-A20R-01 17 7483018 7483018 C T CD68 Missense_Mutation p.S8L 0.73 tolerated_low_confidence(1) unknown(0) TCGA-BT-A20R-01 17 7578513 7578513 C G TP53 Missense_Mutation p.K139N 0.76 deleterious(0.02) possibly_damaging(0.832) TCGA-BT-A20R-01 17 7983723 7983723 G C AC129492.6 Missense_Mutation p.R135P 0.18 unknown(0) TCGA-BT-A20R-01 17 79864646 79864646 G A PCYT2 Silent p.F240F 0.34 TCGA-BT-A20R-01 17 80274695 80274695 C T CD7 Missense_Mutation p.R82K 0.30 tolerated(0.58) benign(0.003) TCGA-BT-A20R-01 17 8395764 8395764 C T MYH10 Missense_Mutation p.E1508K 0.05 benign(0.439) TCGA-BT-A20R-01 18 14513681 14513681 C T POTEC Missense_Mutation p.E505K 0.19 deleterious_low_confidence(0.03) benign(0.428) TCGA-BT-A20R-01 18 18629788 18629788 C T ROCK1 Missense_Mutation p.E77K 0.39 tolerated(0.11) possibly_damaging(0.63) TCGA-BT-A20R-01 18 31323516 31323516 C T ASXL3 Missense_Mutation p.S1235F 0.06 benign(0.352) TCGA-BT-A20R-01 18 55270142 55270142 C T NARS Missense_Mutation p.D429N 0.10 deleterious(0) possibly_damaging(0.691) TCGA-BT-A20R-01 18 63477229 63477229 C T CDH7 Missense_Mutation p.P167L 0.41 tolerated(0.06) probably_damaging(0.98) TCGA-BT-A20R-01 18 9396405 9396405 C T TWSG1 Silent p.N117N 0.13 TCGA-BT-A20R-01 19 10670041 10670041 G A KRI1 Silent p.L402L 0.21 TCGA-BT-A20R-01 19 16268238 16268238 C T HSH2D 3'Flank 0.10 TCGA-BT-A20R-01 19 17000948 17000948 G A F2RL3 Missense_Mutation p.R225H 0.22 tolerated(0.56) benign(0.004) TCGA-BT-A20R-01 19 17417150 17417150 C T MRPL34 Missense_Mutation p.R81C 0.16 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 19 21688535 21688535 T C ZNF429 5'UTR 0.09 TCGA-BT-A20R-01 19 21719683 21719683 G A ZNF429 Silent p.K276K 0.10 TCGA-BT-A20R-01 19 2271908 2271908 A G OAZ1 Missense_Mutation p.Y140C 0.38 deleterious(0.05) possibly_damaging(0.503) TCGA-BT-A20R-01 19 23545301 23545301 C G ZNF91 Missense_Mutation p.L160F 0.22 tolerated(0.71) benign(0.047) TCGA-BT-A20R-01 19 23545372 23545372 C G ZNF91 Missense_Mutation p.E137Q 0.28 tolerated(0.3) possibly_damaging(0.452) TCGA-BT-A20R-01 19 23938261 23938261 C G ZNF681 Silent p.V32V 0.15 TCGA-BT-A20R-01 19 36041510 36041510 C T ATP4A 3'UTR 0.08 TCGA-BT-A20R-01 19 36727471 36727471 T G ZNF146 Silent p.P43P 0.64 TCGA-BT-A20R-01 19 38610501 38610501 G A SIPA1L3 Silent p.R949R 0.06 TCGA-BT-A20R-01 19 40030401 40030401 C T EID2 Missense_Mutation p.E107K 0.06 deleterious(0.02) unknown(0) TCGA-BT-A20R-01 19 41888989 41888989 C T TMEM91 Intron 0.23 TCGA-BT-A20R-01 19 42584035 42584035 C T ZNF574 Missense_Mutation p.P426L 0.05 tolerated(0.32) benign(0.001) TCGA-BT-A20R-01 19 44417605 44417605 G C ZNF45 Silent p.V661V 0.09 TCGA-BT-A20R-01 19 44418218 44418218 G C ZNF45 Nonsense_Mutation p.S457* 0.04 TCGA-BT-A20R-01 19 44571040 44571040 C T ZNF223 Silent p.F353F 0.11 TCGA-BT-A20R-01 19 54515530 54515530 G C CACNG6 3'UTR 0.10 TCGA-BT-A20R-01 19 55652318 55652318 C T TNNT1 Missense_Mutation p.R107Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BT-A20R-01 19 5771022 5771022 C G CATSPERD Missense_Mutation p.Q568E 0.19 tolerated(1) benign(0.002) TCGA-BT-A20R-01 19 58371385 58371385 C T ZNF587 Silent p.L535L 0.14 TCGA-BT-A20R-01 19 59063309 59063309 C G CHMP2A Missense_Mutation p.D169H 0.31 deleterious(0) probably_damaging(0.989) TCGA-BT-A20R-01 19 7125313 7125313 C G INSR Missense_Mutation p.G1080A 0.08 tolerated(1) benign(0.004) TCGA-BT-A20R-01 19 9526415 9526415 G T ZNF266 Nonsense_Mutation p.S40* 0.34 TCGA-BT-A20R-01 1 101705115 101705115 C G S1PR1 Missense_Mutation p.S192C 0.32 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 1 10186932 10186932 C G UBE4B Silent p.L545L 0.19 TCGA-BT-A20R-01 1 110765682 110765682 G C KCNC4 Missense_Mutation p.E259Q 0.13 tolerated(0.16) possibly_damaging(0.833) TCGA-BT-A20R-01 1 11297958 11297958 C T MTOR Missense_Mutation p.R717Q 0.30 deleterious(0) benign(0.206) TCGA-BT-A20R-01 1 118640369 118640379 AGATTTGTTTC - SPAG17 Frame_Shift_Del p.E309Lfs*2 0.29 TCGA-BT-A20R-01 1 144864265 144864265 G C PDE4DIP Missense_Mutation p.Q1944E 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-BT-A20R-01 1 151773402 151773402 G C LINGO4 Missense_Mutation p.F593L 0.21 tolerated(0.27) benign(0.005) TCGA-BT-A20R-01 1 151774212 151774212 C T LINGO4 Silent p.L323L 0.14 TCGA-BT-A20R-01 1 152595518 152595518 G T LCE3A Missense_Mutation p.P21Q 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-BT-A20R-01 1 153333180 153333180 G A S100A9 Missense_Mutation p.D71N 0.41 deleterious(0.03) possibly_damaging(0.589) TCGA-BT-A20R-01 1 153723691 153723691 C T INTS3 Silent p.F235F 0.08 TCGA-BT-A20R-01 1 155106081 155106081 C T EFNA1 Intron 0.29 TCGA-BT-A20R-01 1 156640874 156640874 C T NES Missense_Mutation p.E1036K 0.10 tolerated(0.11) benign(0.024) TCGA-BT-A20R-01 1 156897392 156897392 C T LRRC71 Missense_Mutation p.S256L 0.55 deleterious(0.01) benign(0.104) TCGA-BT-A20R-01 1 159684367 159684367 G C CRP 5'UTR 0.20 TCGA-BT-A20R-01 1 161697035 161697035 A T FCRLB Splice_Site p.X289_splice 0.14 TCGA-BT-A20R-01 1 196694341 196694341 C A CFH Missense_Mutation p.S596Y 0.14 tolerated(0.08) possibly_damaging(0.794) TCGA-BT-A20R-01 1 197411332 197411332 G T CRB1 Silent p.P1305P 0.19 TCGA-BT-A20R-01 1 198711037 198711037 C T PTPRC Nonsense_Mutation p.Q815* 0.08 TCGA-BT-A20R-01 1 200784749 200784749 G A CAMSAP2 Missense_Mutation p.V208I 0.12 tolerated(0.3) benign(0.001) TCGA-BT-A20R-01 1 201437671 201437671 C T PHLDA3 Missense_Mutation p.E82K 0.18 deleterious(0) probably_damaging(0.987) TCGA-BT-A20R-01 1 201437831 201437831 C T PHLDA3 Silent p.R28R 0.22 TCGA-BT-A20R-01 1 201915321 201915321 G A LMOD1 Missense_Mutation p.R50W 0.19 benign(0.025) TCGA-BT-A20R-01 1 205632625 205632625 C T SLC45A3 Silent p.L98L 0.15 TCGA-BT-A20R-01 1 206653236 206653236 G A IKBKE Missense_Mutation p.V403I 0.05 tolerated(0.52) benign(0.03) TCGA-BT-A20R-01 1 207242832 207242832 C T PFKFB2 Nonsense_Mutation p.R351* 0.07 TCGA-BT-A20R-01 1 214814564 214814564 C T CENPF Silent p.I961I 0.19 TCGA-BT-A20R-01 1 236399548 236399548 G A ERO1LB Intron 0.12 TCGA-BT-A20R-01 1 246021899 246021899 G C SMYD3 Missense_Mutation p.I325M 0.06 deleterious(0) possibly_damaging(0.899) TCGA-BT-A20R-01 1 246797846 246797846 G A CNST Missense_Mutation p.E259K 0.10 deleterious(0.01) possibly_damaging(0.864) TCGA-BT-A20R-01 1 248112934 248112934 C G OR2L8 Missense_Mutation p.L259V 0.27 deleterious(0.03) benign(0.127) TCGA-BT-A20R-01 1 25678163 25678163 G A TMEM50A Missense_Mutation p.E85K 0.23 tolerated(0.27) possibly_damaging(0.597) TCGA-BT-A20R-01 1 26104650 26104650 G A MAN1C1 Missense_Mutation p.E438K 0.07 deleterious(0) benign(0.252) TCGA-BT-A20R-01 1 27056160 27056160 C T ARID1A Nonsense_Mutation p.Q386* 0.22 TCGA-BT-A20R-01 1 31437555 31437555 G A PUM1 Silent p.L763L 0.14 TCGA-BT-A20R-01 1 44490024 44490024 G A SLC6A9 5'UTR 0.42 TCGA-BT-A20R-01 1 67792462 67792462 G A IL12RB2 Missense_Mutation p.E137K 0.12 tolerated(0.08) benign(0.104) TCGA-BT-A20R-01 1 84403570 84403570 G C TTLL7 Missense_Mutation p.Q285E 0.07 tolerated(0.28) benign(0.001) TCGA-BT-A20R-01 1 87797721 87797721 C T LMO4 Missense_Mutation p.S8L 0.11 tolerated(0.2) benign(0.001) TCGA-BT-A20R-01 1 89290038 89290038 G A PKN2 Silent p.V796V 0.11 TCGA-BT-A20R-01 1 94639451 94639451 C T ARHGAP29 Missense_Mutation p.E1254K 0.10 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-BT-A20R-01 20 18374906 18374906 G C DZANK1 Missense_Mutation p.S567C 0.37 deleterious(0.02) benign(0.291) TCGA-BT-A20R-01 20 37357240 37357240 C G SLC32A1 Silent p.L512L 0.09 TCGA-BT-A20R-01 20 49574949 49574949 C G DPM1 Missense_Mutation p.E38Q 0.39 tolerated(0.09) benign(0.434) TCGA-BT-A20R-01 21 15588577 15588577 G A RBM11 Missense_Mutation p.E24K 0.10 deleterious(0.03) possibly_damaging(0.719) TCGA-BT-A20R-01 21 39426880 39426880 G C DSCR4 3'UTR 0.15 TCGA-BT-A20R-01 21 45817728 45817728 G A TRPM2 Silent p.A677A 0.30 TCGA-BT-A20R-01 21 45876666 45876666 G A LRRC3 Missense_Mutation p.A47T 0.14 tolerated(0.72) benign(0.048) TCGA-BT-A20R-01 22 24759250 24759250 C A SPECC1L Nonsense_Mutation p.S922* 0.47 TCGA-BT-A20R-01 22 29834919 29834919 C G RFPL1 Missense_Mutation p.L47V 0.15 deleterious(0.01) probably_damaging(0.944) TCGA-BT-A20R-01 22 29835036 29835036 C G RFPL1 Missense_Mutation p.Q86E 0.08 tolerated(0.21) benign(0.303) TCGA-BT-A20R-01 22 31289134 31289134 C T OSBP2 Missense_Mutation p.A632V 0.15 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 22 38021890 38021890 G A GGA1 Missense_Mutation p.E343K 0.21 tolerated(0.77) benign(0.018) TCGA-BT-A20R-01 22 46929664 46929664 G C CELSR1 Nonsense_Mutation p.S1135* 0.07 TCGA-BT-A20R-01 2 103128724 103128724 G C SLC9A4 Silent p.V517V 0.20 TCGA-BT-A20R-01 2 125367461 125367461 C T CNTNAP5 Missense_Mutation p.P613S 0.07 deleterious(0.01) benign(0.362) TCGA-BT-A20R-01 2 152470790 152470790 A G NEB Silent p.D3867D 0.38 TCGA-BT-A20R-01 2 169939948 169939948 C T DHRS9 Silent p.L141L 0.11 TCGA-BT-A20R-01 2 17696923 17696923 C G RAD51AP2 Missense_Mutation p.K920N 0.20 deleterious(0.04) probably_damaging(0.956) TCGA-BT-A20R-01 2 179413733 179413733 C T TTN Missense_Mutation p.E30874K 0.18 TCGA-BT-A20R-01 2 179501355 179501355 A G TTN Missense_Mutation p.V13700A 0.08 TCGA-BT-A20R-01 2 191839600 191839600 C G STAT1 Missense_Mutation p.D732H 0.15 deleterious(0.03) possibly_damaging(0.528) TCGA-BT-A20R-01 2 192701173 192701173 C T SDPR Missense_Mutation p.E252K 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20R-01 2 196671502 196671502 G C DNAH7 Missense_Mutation p.Q3380E 0.29 tolerated(0.37) benign(0.173) TCGA-BT-A20R-01 2 197138838 197138838 C A HECW2 Missense_Mutation p.D1049Y 0.37 deleterious(0.02) benign(0.256) TCGA-BT-A20R-01 2 198508944 198508944 C A RFTN2 Nonsense_Mutation p.E126* 0.19 TCGA-BT-A20R-01 2 198508990 198508990 C G RFTN2 Missense_Mutation p.K110N 0.24 deleterious(0.02) benign(0.162) TCGA-BT-A20R-01 2 203420028 203420028 C T BMPR2 Missense_Mutation p.S547F 0.38 deleterious(0) probably_damaging(0.982) TCGA-BT-A20R-01 2 207310119 207310119 C T ADAM23 Silent p.I101I 0.05 TCGA-BT-A20R-01 2 207437917 207437917 C G ADAM23 Missense_Mutation p.Q579E 0.30 deleterious(0.05) possibly_damaging(0.781) TCGA-BT-A20R-01 2 209007482 209007482 C G CRYGB Missense_Mutation p.E136D 0.30 deleterious(0.05) benign(0.148) TCGA-BT-A20R-01 2 220112206 220112206 G C STK16 Missense_Mutation p.M170I 0.17 deleterious(0.03) benign(0.43) TCGA-BT-A20R-01 2 220437228 220437228 C T INHA Silent p.P44P 0.41 TCGA-BT-A20R-01 2 228771965 228771965 G C DAW1 Missense_Mutation p.D324H 0.19 deleterious(0) probably_damaging(0.988) TCGA-BT-A20R-01 2 231406036 231406036 G C SP100 Missense_Mutation p.L784F 0.17 deleterious(0) possibly_damaging(0.765) TCGA-BT-A20R-01 2 231683405 231683405 C T CAB39 Nonsense_Mutation p.Q338* 0.38 TCGA-BT-A20R-01 2 237103689 237103689 C T ASB18 Silent p.P409P 0.21 TCGA-BT-A20R-01 2 238262009 238262009 C G COL6A3 Missense_Mutation p.G2222A 0.19 benign(0) TCGA-BT-A20R-01 2 241706751 241706751 G C KIF1A Silent p.L503L 0.12 TCGA-BT-A20R-01 2 27801569 27801569 G C C2orf16 Missense_Mutation p.Q710H 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-BT-A20R-01 2 29072931 29072931 C G TRMT61B 3'UTR 0.50 TCGA-BT-A20R-01 2 3197914 3197915 - CAT TSSC1 In_Frame_Ins p.N225_A226insD 0.28 TCGA-BT-A20R-01 2 32396442 32396442 G C SLC30A6 Missense_Mutation p.R30S 0.16 tolerated(0.14) benign(0.02) TCGA-BT-A20R-01 2 43937144 43937144 C G PLEKHH2 Missense_Mutation p.S661C 0.04 deleterious(0) probably_damaging(0.91) TCGA-BT-A20R-01 2 54001597 54001597 C G CHAC2 Missense_Mutation p.L164V 0.12 deleterious(0.02) benign(0.116) TCGA-BT-A20R-01 2 67637199 67637199 G C ETAA1 3'UTR 0.05 TCGA-BT-A20R-01 2 73518548 73518548 G A EGR4 3'UTR 0.31 TCGA-BT-A20R-01 2 74043855 74043855 C T C2orf78 Silent p.L835L 0.15 TCGA-BT-A20R-01 2 89246952 89246952 G A IGKV1-5 Missense_Mutation p.A73V 0.27 deleterious(0.03) benign(0.068) TCGA-BT-A20R-01 2 9419502 9419502 C G ASAP2 Missense_Mutation p.I61M 0.41 tolerated(0.14) possibly_damaging(0.688) TCGA-BT-A20R-01 3 10083240 10083240 C G FANCD2 Intron 0.41 TCGA-BT-A20R-01 3 10146259 10146259 C T FANCD2OS Missense_Mutation p.G67E 0.20 tolerated(0.29) possibly_damaging(0.876) TCGA-BT-A20R-01 3 108179195 108179195 C G MYH15 Missense_Mutation p.K648N 0.17 tolerated(0.09) benign(0.092) TCGA-BT-A20R-01 3 11744444 11744444 C - VGLL4 Splice_Site p.X22_splice 0.27 TCGA-BT-A20R-01 3 121208086 121208086 G C POLQ Nonsense_Mutation p.S1231* 0.19 TCGA-BT-A20R-01 3 124066028 124066028 C A KALRN Silent p.L560L 0.21 TCGA-BT-A20R-01 3 124174160 124174160 G C KALRN Missense_Mutation p.G1228A 0.12 tolerated(0.12) benign(0.005) TCGA-BT-A20R-01 3 125702244 125702244 C G ROPN1B 3'UTR 0.31 TCGA-BT-A20R-01 3 135721778 135721778 C G PPP2R3A Missense_Mutation p.L480V 0.14 tolerated_low_confidence(0.31) benign(0.008) TCGA-BT-A20R-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-BT-A20R-01 3 180693957 180693957 C T FXR1 Silent p.N581N 0.27 TCGA-BT-A20R-01 3 185191526 185191526 C T MAP3K13 Nonsense_Mutation p.R803* 0.05 TCGA-BT-A20R-01 3 36874249 36874249 C G TRANK1 Missense_Mutation p.K2231N 0.35 tolerated(0.11) benign(0.023) TCGA-BT-A20R-01 3 47162371 47162371 G A SETD2 Missense_Mutation p.S1252L 0.11 deleterious_low_confidence(0.01) benign(0.034) TCGA-BT-A20R-01 3 47447452 47447452 C T PTPN23 Silent p.F154F 0.21 TCGA-BT-A20R-01 3 48698212 48698212 C T CELSR3 Missense_Mutation p.R619H 0.16 deleterious(0.02) probably_damaging(0.973) TCGA-BT-A20R-01 3 52554987 52554987 C A STAB1 Missense_Mutation p.S1958R 0.41 tolerated(0.27) benign(0.006) TCGA-BT-A20R-01 4 114275389 114275389 C T ANK2 Missense_Mutation p.S1872L 0.24 possibly_damaging(0.59) TCGA-BT-A20R-01 4 156634390 156634390 G A GUCY1A3 Silent p.L409L 0.27 TCGA-BT-A20R-01 4 37848724 37848724 C T PGM2 Missense_Mutation p.H394Y 0.25 deleterious(0.01) benign(0.087) TCGA-BT-A20R-01 4 38022296 38022296 C T TBC1D1 Nonsense_Mutation p.Q353* 0.21 TCGA-BT-A20R-01 4 39448977 39448977 G C KLB Silent p.R877R 0.21 TCGA-BT-A20R-01 4 40045292 40045292 C G RP11-333E13.4 RNA 0.32 TCGA-BT-A20R-01 4 44680684 44680684 C T GUF1 Silent p.L15L 0.25 TCGA-BT-A20R-01 4 46736951 46736951 G A COX7B2 3'UTR 0.35 TCGA-BT-A20R-01 4 53751964 53751964 C T SCFD2 Missense_Mutation p.E638K 0.25 deleterious(0) probably_damaging(0.998) TCGA-BT-A20R-01 4 6335373 6335373 G A PPP2R2C Silent p.S292S 0.19 TCGA-BT-A20R-01 4 71232491 71232491 G C SMR3A Missense_Mutation p.R62T 0.05 deleterious_low_confidence(0) unknown(0) TCGA-BT-A20R-01 4 73169687 73169687 C T ADAMTS3 Missense_Mutation p.D791N 0.17 tolerated(0.39) benign(0.008) TCGA-BT-A20R-01 4 81283911 81283911 G A C4orf22 Missense_Mutation p.E39K 0.18 tolerated(0.14) benign(0.236) TCGA-BT-A20R-01 5 112363128 112363128 C T MCC Silent p.L977L 0.07 TCGA-BT-A20R-01 5 115152112 115152112 G A CDO1 5'UTR 0.42 TCGA-BT-A20R-01 5 115152145 115152145 G C CDO1 5'UTR 0.46 TCGA-BT-A20R-01 5 115152207 115152207 G A CDO1 5'UTR 0.44 TCGA-BT-A20R-01 5 128440990 128440990 C T ISOC1 Missense_Mutation p.P181L 0.27 deleterious(0.01) benign(0.143) TCGA-BT-A20R-01 5 139876702 139876702 C G ANKHD1 Missense_Mutation p.S948C 0.04 unknown(0) TCGA-BT-A20R-01 5 140810296 140810296 G A PCDHGA12 5'UTR 0.15 TCGA-BT-A20R-01 5 140865104 140865104 G C PCDHGC4 Missense_Mutation p.E122Q 0.06 deleterious(0.03) possibly_damaging(0.54) TCGA-BT-A20R-01 5 141336615 141336615 C T PCDH12 Missense_Mutation p.A268T 0.41 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 5 142661418 142661418 C T NR3C1 3'UTR 0.23 TCGA-BT-A20R-01 5 149758896 149758896 G A TCOF1 Silent p.Q861Q 0.40 TCGA-BT-A20R-01 5 150925577 150925577 G C FAT2 Missense_Mutation p.S1704C 0.44 possibly_damaging(0.897) TCGA-BT-A20R-01 5 167626878 167626878 G A TENM2 Missense_Mutation p.E1058K 0.40 deleterious(0) possibly_damaging(0.781) TCGA-BT-A20R-01 5 167673915 167673915 G A TENM2 Missense_Mutation p.E1991K 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A20R-01 5 171385 171385 C T PLEKHG4B Silent p.P936P 0.25 TCGA-BT-A20R-01 5 175921066 175921066 G T FAF2 Missense_Mutation p.D184Y 0.31 deleterious(0) probably_damaging(0.982) TCGA-BT-A20R-01 5 179264389 179264389 G T SQSTM1 3'UTR 0.18 TCGA-BT-A20R-01 5 23521274 23521274 C G PRDM9 Nonsense_Mutation p.S165* 0.15 TCGA-BT-A20R-01 5 72856967 72856967 G C ANKRA2 Missense_Mutation p.L146V 0.27 tolerated(0.36) benign(0.001) TCGA-BT-A20R-01 5 7743786 7743786 C T ADCY2 Missense_Mutation p.S626F 0.17 tolerated(0.53) benign(0.093) TCGA-BT-A20R-01 5 80369170 80369170 C T RASGRF2 Silent p.L262L 0.18 TCGA-BT-A20R-01 6 112476811 112476811 C T LAMA4 Missense_Mutation p.E639K 0.15 tolerated(0.89) benign(0.003) TCGA-BT-A20R-01 6 127836879 127836879 G C SOGA3 Missense_Mutation p.S294C 0.15 deleterious_low_confidence(0.01) benign(0.041) TCGA-BT-A20R-01 6 131571603 131571603 G C AKAP7 Intron 0.34 TCGA-BT-A20R-01 6 131927625 131927625 T C MED23 Missense_Mutation p.H454R 0.19 deleterious(0.01) possibly_damaging(0.523) TCGA-BT-A20R-01 6 132021974 132021974 C A OR2A4 Missense_Mutation p.D190Y 0.15 deleterious(0.01) probably_damaging(0.929) TCGA-BT-A20R-01 6 133834109 133834109 G A EYA4 Missense_Mutation p.M478I 0.20 deleterious(0.03) benign(0.101) TCGA-BT-A20R-01 6 20126922 20126922 G A MBOAT1 Silent p.P180P 0.03 TCGA-BT-A20R-01 6 26205210 26205210 C G HIST1H4E 3'UTR 0.09 TCGA-BT-A20R-01 6 2624107 2624107 C T C6orf195 5'UTR 0.42 TCGA-BT-A20R-01 6 26407948 26407948 G T BTN3A1 Silent p.G161G 0.07 TCGA-BT-A20R-01 6 31079483 31079483 C T C6orf15 Nonsense_Mutation p.W218* 0.07 TCGA-BT-A20R-01 6 38783350 38783350 G A DNAH8 Missense_Mutation p.R930H 0.14 benign(0.001) TCGA-BT-A20R-01 6 42146056 42146056 C A GUCA1A Silent p.L80L 0.19 TCGA-BT-A20R-01 6 46977428 46977428 G C GPR110 Missense_Mutation p.I581M 0.17 deleterious(0.03) possibly_damaging(0.717) TCGA-BT-A20R-01 6 46977848 46977848 G A GPR110 Silent p.L441L 0.12 TCGA-BT-A20R-01 6 64421841 64421841 C T PHF3 Nonsense_Mutation p.Q1453* 0.23 TCGA-BT-A20R-01 6 7578018 7578018 G C DSP Missense_Mutation p.E962Q 0.05 probably_damaging(0.993) TCGA-BT-A20R-01 6 7602962 7602962 G C SNRNP48 Missense_Mutation p.K234N 0.24 deleterious(0) probably_damaging(0.991) TCGA-BT-A20R-01 6 82891624 82891624 C G IBTK Missense_Mutation p.E1233Q 0.10 tolerated_low_confidence(0.05) probably_damaging(0.964) TCGA-BT-A20R-01 6 84925148 84925148 C T KIAA1009 Missense_Mutation p.G119R 0.23 deleterious(0.01) benign(0.111) TCGA-BT-A20R-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.31 deleterious(0) possibly_damaging(0.79) TCGA-BT-A20R-01 7 103322663 103322663 C T RELN Missense_Mutation p.E397K 0.05 deleterious(0.03) probably_damaging(0.98) TCGA-BT-A20R-01 7 107408296 107408296 G A SLC26A3 Missense_Mutation p.S707L 0.21 deleterious(0.01) probably_damaging(1) TCGA-BT-A20R-01 7 113558970 113558970 C T PPP1R3A Missense_Mutation p.D28N 0.27 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 7 115890320 115890320 G A TES Missense_Mutation p.D158N 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A20R-01 7 122635437 122635437 G A TAS2R16 Silent p.T84T 0.19 TCGA-BT-A20R-01 7 129394931 129394931 G A NRF1 Silent p.Q474Q 0.19 TCGA-BT-A20R-01 7 129395098 129395098 G T NRF1 3'UTR 0.25 TCGA-BT-A20R-01 7 143039095 143039095 G C CLCN1 Missense_Mutation p.Q552H 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-BT-A20R-01 7 21603941 21603941 C G DNAH11 Missense_Mutation p.H374D 0.14 benign(0.419) TCGA-BT-A20R-01 7 2269702 2269702 G A MAD1L1 Nonsense_Mutation p.Q23* 0.32 TCGA-BT-A20R-01 7 27135004 27135010 ATACGTA - HOXA1 Frame_Shift_Del p.T175Ifs*32 0.33 TCGA-BT-A20R-01 7 38725645 38725645 G A FAM183B 5'UTR 0.11 TCGA-BT-A20R-01 7 42187951 42187951 C T GLI3 Missense_Mutation p.E81K 0.15 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-BT-A20R-01 7 47876633 47876633 G A PKD1L1 Silent p.Y1943Y 0.06 TCGA-BT-A20R-01 7 56146188 56146188 C T SUMF2 Intron 0.25 TCGA-BT-A20R-01 7 6054965 6054965 G C AIMP2 Missense_Mutation p.L108F 0.19 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 7 64363703 64363703 C T ZNF273 Missense_Mutation p.S3F 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-BT-A20R-01 7 73097498 73097498 C T DNAJC30 Missense_Mutation p.E86K 0.22 deleterious(0.02) benign(0.075) TCGA-BT-A20R-01 7 82544005 82544005 C G PCLO Missense_Mutation p.E4433Q 0.20 unknown(0) TCGA-BT-A20R-01 7 99057790 99057790 C G PTCD1 Missense_Mutation p.E14Q 0.16 deleterious_low_confidence(0.01) benign(0.217) TCGA-BT-A20R-01 8 100549017 100549017 C T VPS13B Intron 0.22 TCGA-BT-A20R-01 8 101149855 101149855 G C FBXO43 Missense_Mutation p.Q538E 0.36 deleterious(0) benign(0.258) TCGA-BT-A20R-01 8 107782327 107782327 C G ABRA Missense_Mutation p.R31P 0.10 deleterious(0.01) probably_damaging(0.937) TCGA-BT-A20R-01 8 17401171 17401171 G C SLC7A2 Missense_Mutation p.G148A 0.38 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 8 36642013 36642013 C T KCNU1 Missense_Mutation p.L29F 0.12 deleterious(0.02) benign(0.063) TCGA-BT-A20R-01 8 37729403 37729403 C G RAB11FIP1 Missense_Mutation p.D973H 0.12 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BT-A20R-01 8 37729766 37729766 C G RAB11FIP1 Missense_Mutation p.E852Q 0.17 tolerated_low_confidence(0.1) benign(0.025) TCGA-BT-A20R-01 8 37730228 37730228 C G RAB11FIP1 Missense_Mutation p.E698Q 0.20 deleterious(0.05) benign(0.439) TCGA-BT-A20R-01 8 39613416 39613416 C G ADAM2 Missense_Mutation p.G543A 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-BT-A20R-01 8 8175696 8175696 T A SGK223 Nonsense_Mutation p.K1397* 0.19 TCGA-BT-A20R-01 8 8175697 8175697 C T SGK223 Silent p.L1396L 0.22 TCGA-BT-A20R-01 8 92972521 92972521 C T RUNX1T1 Silent p.P599P 0.25 TCGA-BT-A20R-01 9 103348453 103348453 G A MURC Missense_Mutation p.R272H 0.20 tolerated(0.36) benign(0.001) TCGA-BT-A20R-01 9 104357001 104357001 C G PPP3R2 Missense_Mutation p.G71A 0.14 deleterious(0) possibly_damaging(0.844) TCGA-BT-A20R-01 9 125273495 125273495 G C OR1J2 Missense_Mutation p.E139Q 0.14 tolerated_low_confidence(0.28) benign(0.009) TCGA-BT-A20R-01 9 127693663 127693663 C G GOLGA1 Missense_Mutation p.R53T 0.16 deleterious(0) possibly_damaging(0.889) TCGA-BT-A20R-01 9 127734000 127734000 C T SCAI Missense_Mutation p.R531Q 0.19 tolerated(0.68) benign(0.001) TCGA-BT-A20R-01 9 131388736 131388736 G A SPTAN1 Missense_Mutation p.E2116K 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-BT-A20R-01 9 139266398 139266398 C T CARD9 Missense_Mutation p.E45K 0.15 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 9 139741083 139741083 C T C9orf172 Silent p.I739I 0.50 TCGA-BT-A20R-01 9 21202054 21202054 G C IFNA7 Silent p.A37A 0.16 TCGA-BT-A20R-01 9 5339761 5339761 C G RLN1 5'UTR 0.37 TCGA-BT-A20R-01 9 69423922 69423922 G C ANKRD20A4 Missense_Mutation p.E740Q 0.22 deleterious(0.02) benign(0.424) TCGA-BT-A20R-01 9 84531751 84531751 C G SPATA31D5P RNA 0.21 TCGA-BT-A20R-01 X 105011463 105011463 G C IL1RAPL2 Missense_Mutation p.E624Q 0.07 tolerated_low_confidence(0.37) benign(0.016) TCGA-BT-A20R-01 X 129545341 129545341 G A RBMX2 Missense_Mutation p.R108Q 0.08 deleterious(0.01) possibly_damaging(0.719) TCGA-BT-A20R-01 X 152159943 152159943 A G PNMA5 Missense_Mutation p.I67T 0.19 deleterious(0) possibly_damaging(0.848) TCGA-BT-A20R-01 X 15579973 15579973 G A ACE2 3'UTR 0.45 TCGA-BT-A20R-01 X 22056609 22056609 C T PHEX Silent p.L47L 0.18 TCGA-BT-A20R-01 X 23412194 23412194 G C PTCHD1 Missense_Mutation p.K853N 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-BT-A20R-01 X 37029100 37029100 G C FAM47C Missense_Mutation p.D873H 0.05 deleterious(0) probably_damaging(0.965) TCGA-BT-A20R-01 X 38150241 38150241 A C RPGR Missense_Mutation p.L515V 0.15 probably_damaging(0.912) TCGA-BT-A20R-01 X 46884244 46884244 G C JADE3 Missense_Mutation p.V135L 0.26 tolerated(0.12) benign(0.052) TCGA-BT-A20R-01 X 69646848 69646848 G A GDPD2 Missense_Mutation p.R230Q 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A20R-01 X 70321316 70321316 C A FOXO4 Silent p.V412V 0.17 TCGA-BT-A20R-01 X 70338701 70338701 G A MED12 Missense_Mutation p.E33K 0.33 benign(0.223) TCGA-BT-A20T-01 10 106139898 106139898 C A CCDC147 Missense_Mutation p.Q429K 0.18 tolerated(0.12) benign(0.036) TCGA-BT-A20T-01 10 108338932 108338932 G A SORCS1 Missense_Mutation p.S1150F 0.46 deleterious(0) possibly_damaging(0.694) TCGA-BT-A20T-01 10 124457887 124457887 C G C10orf120 Missense_Mutation p.E124Q 0.42 deleterious(0.03) possibly_damaging(0.836) TCGA-BT-A20T-01 10 126505169 126505169 C G FAM175B Nonsense_Mutation p.S63* 0.38 TCGA-BT-A20T-01 10 14572359 14572359 G C FAM107B Missense_Mutation p.H209D 0.34 deleterious(0) probably_damaging(0.961) TCGA-BT-A20T-01 10 32197217 32197217 C A ARHGAP12 Missense_Mutation p.E189D 0.33 tolerated(0.36) benign(0.338) TCGA-BT-A20T-01 10 61022288 61022288 G A FAM13C Missense_Mutation p.P381L 0.10 tolerated(0.27) benign(0.027) TCGA-BT-A20T-01 10 7785117 7785117 G A ITIH2 Missense_Mutation p.D702N 0.31 deleterious(0) possibly_damaging(0.721) TCGA-BT-A20T-01 10 84738833 84738833 G A NRG3 Missense_Mutation p.E514K 0.10 deleterious(0.01) possibly_damaging(0.803) TCGA-BT-A20T-01 10 91099496 91099496 C T IFIT3 Nonsense_Mutation p.Q362* 0.43 TCGA-BT-A20T-01 11 107535976 107535976 T G ELMOD1 3'UTR 0.13 TCGA-BT-A20T-01 11 110035800 110035800 C A ZC3H12C Missense_Mutation p.H664N 0.49 deleterious(0.03) probably_damaging(0.993) TCGA-BT-A20T-01 11 118529682 118529682 G A TREH Nonsense_Mutation p.Q493* 0.54 TCGA-BT-A20T-01 11 126138751 126138751 C T SRPR 5'UTR 0.45 TCGA-BT-A20T-01 11 14825541 14825541 G A PDE3B Silent p.P489P 0.39 TCGA-BT-A20T-01 11 18586472 18586472 G A UEVLD Silent p.L193L 0.57 TCGA-BT-A20T-01 11 3430163 3430163 G A TSSC2 RNA 0.42 TCGA-BT-A20T-01 11 34492549 34492549 C G CAT Missense_Mutation p.I493M 0.53 deleterious(0.03) possibly_damaging(0.756) TCGA-BT-A20T-01 11 5664543 5664543 G C TRIM34 Missense_Mutation p.K357N 0.66 tolerated(0.38) benign(0.049) TCGA-BT-A20T-01 11 57958523 57958523 C G OR9Q2 Silent p.L187L 0.27 TCGA-BT-A20T-01 11 58189810 58189810 G A OR5B2 Silent p.L309L 0.39 TCGA-BT-A20T-01 11 63066993 63066993 G A SLC22A10 Missense_Mutation p.R321K 0.28 tolerated(0.34) benign(0.05) TCGA-BT-A20T-01 11 65271718 65271718 C G MALAT1 RNA 0.30 TCGA-BT-A20T-01 11 65272561 65272561 C T MALAT1 RNA 0.32 TCGA-BT-A20T-01 11 66030506 66030506 C A KLC2 Silent p.R251R 0.25 TCGA-BT-A20T-01 11 66082600 66082600 G A CD248 Silent p.I633I 0.34 TCGA-BT-A20T-01 11 66816082 66816082 G A SYT12 Missense_Mutation p.E374K 0.31 deleterious(0.02) possibly_damaging(0.719) TCGA-BT-A20T-01 11 67021049 67021049 C T KDM2A Missense_Mutation p.R1020W 0.43 deleterious(0) probably_damaging(0.971) TCGA-BT-A20T-01 11 71719867 71719867 G A NUMA1 Nonsense_Mutation p.R1695* 0.16 TCGA-BT-A20T-01 11 71728852 71728852 G A NUMA1 Silent p.L334L 0.36 TCGA-BT-A20T-01 11 75298211 75298211 G C MAP6 Missense_Mutation p.L779V 0.40 tolerated_low_confidence(0.07) probably_damaging(0.978) TCGA-BT-A20T-01 11 76873170 76873170 G C MYO7A Missense_Mutation p.E450Q 0.38 deleterious(0.02) benign(0.234) TCGA-BT-A20T-01 11 83770465 83770465 G T DLG2 Missense_Mutation p.A271E 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 12 108008937 108008937 C T BTBD11 Nonsense_Mutation p.Q667* 0.19 TCGA-BT-A20T-01 12 113830871 113830871 C T SDS Missense_Mutation p.E288K 0.38 tolerated(0.08) benign(0.03) TCGA-BT-A20T-01 12 12980177 12980177 C G DDX47 Intron 0.35 TCGA-BT-A20T-01 12 19407999 19407999 C T PLEKHA5 Missense_Mutation p.S111F 0.13 deleterious(0) possibly_damaging(0.775) TCGA-BT-A20T-01 12 21721862 21721862 C T GYS2 Missense_Mutation p.V254M 0.35 deleterious(0) possibly_damaging(0.882) TCGA-BT-A20T-01 12 27089509 27089509 C T ASUN Intron 0.37 TCGA-BT-A20T-01 12 33532824 33532824 C G SYT10 Missense_Mutation p.W481C 0.34 deleterious(0) probably_damaging(0.944) TCGA-BT-A20T-01 12 48596451 48596451 G A OR10AD1 Missense_Mutation p.L209F 0.31 tolerated(0.17) benign(0.2) TCGA-BT-A20T-01 12 51279358 51279358 C T TMPRSS12 Intron 0.67 TCGA-BT-A20T-01 12 52967248 52967248 G A KRT74 Missense_Mutation p.S105F 0.42 tolerated(0.17) benign(0.031) TCGA-BT-A20T-01 12 69207366 69207366 A G MDM2 Silent p.L44L 0.36 TCGA-BT-A20T-01 12 70986212 70986212 G A PTPRB Missense_Mutation p.H544Y 0.11 tolerated(0.53) benign(0.005) TCGA-BT-A20T-01 12 7249214 7249214 C T C1RL Missense_Mutation p.E413K 0.31 tolerated(0.2) benign(0.318) TCGA-BT-A20T-01 12 86199359 86199359 G A RASSF9 Silent p.L143L 0.39 TCGA-BT-A20T-01 12 95918479 95918479 G C USP44 Silent p.L570L 0.48 TCGA-BT-A20T-01 13 108861189 108861189 G C LIG4 Missense_Mutation p.L810V 0.31 tolerated(0.29) benign(0.041) TCGA-BT-A20T-01 13 113730363 113730363 T A MCF2L Silent p.A464A 0.41 TCGA-BT-A20T-01 13 115008757 115008757 C T CDC16 Silent p.P189P 0.26 TCGA-BT-A20T-01 13 25074482 25074482 C T PARP4 Missense_Mutation p.E125K 0.33 tolerated(0.1) benign(0.028) TCGA-BT-A20T-01 13 33110210 33110210 C A N4BP2L2 Intron 0.30 TCGA-BT-A20T-01 13 37618294 37618294 T C SUPT20H Missense_Mutation p.Y106C 0.47 deleterious(0) probably_damaging(0.942) TCGA-BT-A20T-01 13 49752710 49752710 G A FNDC3A Missense_Mutation p.G513S 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-BT-A20T-01 13 76409323 76409323 C T LMO7 Intron 0.39 TCGA-BT-A20T-01 13 95726579 95726579 C T ABCC4 Splice_Site p.X936_splice 0.29 TCGA-BT-A20T-01 13 96361561 96361561 G A DNAJC3 Missense_Mutation p.D55N 0.16 deleterious(0) probably_damaging(0.991) TCGA-BT-A20T-01 14 105859633 105859633 C G PACS2 Missense_Mutation p.L853V 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A20T-01 14 21025034 21025034 G A RNASE9 Silent p.V70V 0.39 TCGA-BT-A20T-01 14 21556227 21556227 C T ARHGEF40 Silent p.A1496A 0.48 TCGA-BT-A20T-01 14 24607886 24607886 G A PSME1 3'UTR 0.59 TCGA-BT-A20T-01 14 32902953 32902953 G A AKAP6 Missense_Mutation p.R85Q 0.54 deleterious(0) probably_damaging(0.994) TCGA-BT-A20T-01 14 90867659 90867659 A G CALM1 Missense_Mutation p.K31E 0.67 tolerated_low_confidence(0.09) benign(0.107) TCGA-BT-A20T-01 14 94088400 94088400 G A UNC79 Silent p.L1430L 0.27 TCGA-BT-A20T-01 14 96152883 96152883 G A TCL1B Missense_Mutation p.E27K 0.46 deleterious(0.01) probably_damaging(0.963) TCGA-BT-A20T-01 15 31862286 31862286 C T OTUD7A Missense_Mutation p.R89Q 0.06 tolerated(0.09) benign(0.086) TCGA-BT-A20T-01 15 43552715 43552715 C T TGM5 Missense_Mutation p.E25K 0.34 deleterious(0) possibly_damaging(0.672) TCGA-BT-A20T-01 15 72552924 72552924 C T PARP6 Missense_Mutation p.M217I 0.36 tolerated_low_confidence(0.51) benign(0) TCGA-BT-A20T-01 15 74588272 74588272 G A CCDC33 Missense_Mutation p.E425K 0.37 tolerated(0.47) possibly_damaging(0.801) TCGA-BT-A20T-01 15 84233946 84233946 C A SH3GL3 Missense_Mutation p.Q59K 0.33 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 15 89379446 89379446 T A ACAN Silent p.T3T 0.22 TCGA-BT-A20T-01 16 1398294 1398294 G C BAIAP3 Missense_Mutation p.R1151T 0.14 deleterious(0.01) benign(0.01) TCGA-BT-A20T-01 16 14340888 14340888 G C MKL2 Missense_Mutation p.E591Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A20T-01 16 14989571 14989571 G A NOMO1 3'UTR 0.35 TCGA-BT-A20T-01 16 23646501 23646501 C G PALB2 Missense_Mutation p.E456Q 0.28 tolerated(0.45) benign(0.396) TCGA-BT-A20T-01 16 28893844 28893844 G A ATP2A1 Missense_Mutation p.D133N 0.24 tolerated(0.34) benign(0.094) TCGA-BT-A20T-01 16 28950083 28950083 G A CD19 Missense_Mutation p.E526K 0.41 deleterious(0) probably_damaging(0.953) TCGA-BT-A20T-01 16 30092610 30092610 G A PPP4C Silent p.Q43Q 0.06 TCGA-BT-A20T-01 16 30581215 30581215 C T ZNF688 3'UTR 0.30 TCGA-BT-A20T-01 16 31499695 31499695 C T SLC5A2 Intron 0.11 TCGA-BT-A20T-01 16 3820792 3820792 G A CREBBP Nonsense_Mutation p.Q887* 0.75 TCGA-BT-A20T-01 16 3820952 3820952 G C CREBBP Silent p.L833L 0.68 TCGA-BT-A20T-01 16 47347638 47347638 A G ITFG1 Splice_Site p.X299_splice 0.37 TCGA-BT-A20T-01 16 4862198 4862198 G A GLYR1 Nonsense_Mutation p.Q391* 0.14 TCGA-BT-A20T-01 16 53504333 53504333 G C RBL2 Missense_Mutation p.V762L 0.22 tolerated(0.16) benign(0.062) TCGA-BT-A20T-01 16 53878094 53878094 C T FTO Missense_Mutation p.S260F 0.37 tolerated(0.07) benign(0.292) TCGA-BT-A20T-01 16 54319259 54319259 G A IRX3 Silent p.F178F 0.32 TCGA-BT-A20T-01 16 71805129 71805129 G A AP1G1 Silent p.I165I 0.44 TCGA-BT-A20T-01 16 72159145 72159145 C T PMFBP1 Missense_Mutation p.E805K 0.27 deleterious(0) probably_damaging(0.986) TCGA-BT-A20T-01 16 726483 726483 G A RHBDL1 Missense_Mutation p.E128K 0.52 deleterious(0.01) benign(0.192) TCGA-BT-A20T-01 16 726497 726497 G A RHBDL1 Silent p.L132L 0.67 TCGA-BT-A20T-01 16 84028251 84028251 G C NECAB2 Missense_Mutation p.Q251H 0.13 deleterious(0) probably_damaging(0.944) TCGA-BT-A20T-01 16 84182710 84182710 G A DNAAF1 Missense_Mutation p.A75T 0.38 tolerated(0.2) benign(0.026) TCGA-BT-A20T-01 17 10219314 10219314 A G MYH13 Missense_Mutation p.V1256A 0.30 deleterious(0.05) benign(0.055) TCGA-BT-A20T-01 17 18927599 18927599 C T GRAP Missense_Mutation p.D133N 0.62 tolerated(0.17) possibly_damaging(0.548) TCGA-BT-A20T-01 17 27437053 27437053 C T MYO18A Missense_Mutation p.E1052K 0.24 tolerated(0.23) benign(0.297) TCGA-BT-A20T-01 17 31344625 31344625 C G ASIC2 Missense_Mutation p.E507Q 0.33 deleterious(0.02) benign(0.122) TCGA-BT-A20T-01 17 3433367 3433367 G A TRPV3 Missense_Mutation p.T399M 0.64 deleterious(0.05) possibly_damaging(0.785) TCGA-BT-A20T-01 17 37872839 37872839 C T ERBB2 Missense_Mutation p.S573L 0.33 tolerated(0.07) benign(0.095) TCGA-BT-A20T-01 17 41355748 41355748 C T NBR1 Missense_Mutation p.S891F 0.42 deleterious(0) probably_damaging(0.914) TCGA-BT-A20T-01 17 41355760 41355760 C T NBR1 Missense_Mutation p.S895F 0.41 deleterious(0) probably_damaging(0.914) TCGA-BT-A20T-01 17 43227360 43227360 C T HEXIM1 Missense_Mutation p.S268L 0.35 deleterious(0) probably_damaging(0.973) TCGA-BT-A20T-01 17 48070801 48070801 G A DLX3 Missense_Mutation p.A160V 0.21 deleterious(0) probably_damaging(0.983) TCGA-BT-A20T-01 17 53345431 53345431 G C HLF Missense_Mutation p.Q145H 0.35 tolerated(0.47) benign(0.001) TCGA-BT-A20T-01 17 62865278 62865278 G C LRRC37A3 Silent p.L971L 0.23 TCGA-BT-A20T-01 17 67270112 67270112 G A ABCA5 Nonsense_Mutation p.Q918* 0.40 TCGA-BT-A20T-01 17 7217458 7217458 G T GPS2 Nonsense_Mutation p.S113* 0.61 TCGA-BT-A20T-01 17 73235955 73235955 C A GGA3 Missense_Mutation p.V500F 0.29 tolerated(0.1) benign(0.304) TCGA-BT-A20T-01 17 79496104 79496104 C G FSCN2 Missense_Mutation p.R183G 0.36 tolerated(0.09) benign(0.235) TCGA-BT-A20T-01 18 11851604 11851604 G A CHMP1B Missense_Mutation p.E32K 0.40 deleterious(0.02) benign(0.26) TCGA-BT-A20T-01 18 33607165 33607165 G A RPRD1A Silent p.L199L 0.31 TCGA-BT-A20T-01 18 47363122 47363122 C G MYO5B Missense_Mutation p.E1758Q 0.44 tolerated(0.11) probably_damaging(0.967) TCGA-BT-A20T-01 18 670747 670747 G A TYMS Silent p.V204V 0.41 TCGA-BT-A20T-01 18 670754 670754 G A TYMS Missense_Mutation p.E207K 0.41 tolerated(0.25) possibly_damaging(0.502) TCGA-BT-A20T-01 19 10812162 10812162 C T QTRT1 Missense_Mutation p.S9F 0.17 deleterious(0) benign(0.316) TCGA-BT-A20T-01 19 11123707 11123707 C A SMARCA4 Missense_Mutation p.T786N 0.40 probably_damaging(0.995) TCGA-BT-A20T-01 19 1818820 1818820 G A REXO1 Silent p.L929L 0.30 TCGA-BT-A20T-01 19 22156562 22156562 T C ZNF208 Missense_Mutation p.Y425C 0.39 deleterious(0.04) possibly_damaging(0.599) TCGA-BT-A20T-01 19 36728009 36728009 C T ZNF146 Nonsense_Mutation p.Q223* 0.38 TCGA-BT-A20T-01 19 39214966 39214966 C A ACTN4 Missense_Mutation p.S621Y 0.38 deleterious(0.05) possibly_damaging(0.547) TCGA-BT-A20T-01 19 41008156 41008156 C T SPTBN4 Missense_Mutation p.S340F 0.22 deleterious(0) possibly_damaging(0.677) TCGA-BT-A20T-01 19 43575862 43575862 G C PSG2 Silent p.V318V 0.37 TCGA-BT-A20T-01 19 44514437 44514437 G A ZNF230 Silent p.A82A 0.07 TCGA-BT-A20T-01 19 44981167 44981167 G A ZNF180 Missense_Mutation p.H511Y 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 19 46112870 46112871 TC - EML2 3'Flank 0.28 TCGA-BT-A20T-01 19 46973831 46973831 C A PNMAL1 Silent p.L154L 0.30 TCGA-BT-A20T-01 19 4816641 4816641 C A TICAM1 Missense_Mutation p.Q583H 0.10 tolerated(0.06) probably_damaging(0.987) TCGA-BT-A20T-01 19 4816911 4816911 C G TICAM1 Missense_Mutation p.E493D 0.16 deleterious(0.05) probably_damaging(0.971) TCGA-BT-A20T-01 19 51129249 51129249 T C SYT3 Missense_Mutation p.N436S 0.35 tolerated(0.67) probably_damaging(0.931) TCGA-BT-A20T-01 19 51381950 51381950 G A KLK2 3'UTR 0.33 TCGA-BT-A20T-01 19 51914402 51914402 C T SIGLEC10 Missense_Mutation p.R682Q 0.23 tolerated(1) benign(0) TCGA-BT-A20T-01 19 54618717 54618717 C T TFPT 5'UTR 0.17 TCGA-BT-A20T-01 19 55494635 55494635 G A NLRP2 Silent p.E523E 0.24 TCGA-BT-A20T-01 19 56223188 56223188 C T NLRP9 Missense_Mutation p.D941N 0.16 tolerated(0.27) benign(0.394) TCGA-BT-A20T-01 19 56369819 56369819 G A NLRP4 Missense_Mutation p.E354K 0.36 deleterious(0.01) benign(0.23) TCGA-BT-A20T-01 19 56572902 56572902 G A NLRP5 3'UTR 0.32 TCGA-BT-A20T-01 19 57027736 57027736 G A ZNF471 Missense_Mutation p.M42I 0.16 deleterious(0) possibly_damaging(0.708) TCGA-BT-A20T-01 19 7267597 7267597 C T INSR Missense_Mutation p.M137I 0.25 tolerated(0.06) possibly_damaging(0.892) TCGA-BT-A20T-01 19 8999519 8999519 G C MUC16 Silent p.T13552T 0.25 TCGA-BT-A20T-01 1 107599800 107599800 G C PRMT6 Missense_Mutation p.E155Q 0.34 deleterious(0.02) possibly_damaging(0.79) TCGA-BT-A20T-01 1 111060995 111060995 C G KCNA10 Missense_Mutation p.D139H 0.32 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 1 114310974 114310974 G C RSBN1 Missense_Mutation p.R566G 0.15 deleterious(0) probably_damaging(0.998) TCGA-BT-A20T-01 1 117633211 117633211 G T TTF2 Nonsense_Mutation p.E852* 0.26 TCGA-BT-A20T-01 1 148012500 148012500 C T NBPF14 Intron 0.09 TCGA-BT-A20T-01 1 150443792 150443792 C T RPRD2 Nonsense_Mutation p.R790* 0.27 TCGA-BT-A20T-01 1 155491121 155491121 C T ASH1L Missense_Mutation p.D64N 0.32 tolerated_low_confidence(0.23) benign(0.047) TCGA-BT-A20T-01 1 156641159 156641159 C T NES Missense_Mutation p.E941K 0.37 tolerated(0.1) benign(0.035) TCGA-BT-A20T-01 1 158151886 158151886 C G CD1D Missense_Mutation p.F131L 0.31 deleterious(0) possibly_damaging(0.901) TCGA-BT-A20T-01 1 160914926 160914926 T G ITLN2 3'UTR 0.29 TCGA-BT-A20T-01 1 161021110 161021121 GGCCAGGGCCAA - ARHGAP30 In_Frame_Del p.L468_G471del 0.10 TCGA-BT-A20T-01 1 167381395 167381395 G A POU2F1 Silent p.V585V 0.27 TCGA-BT-A20T-01 1 176903363 176903363 C T ASTN1 Missense_Mutation p.E866K 0.12 tolerated(0.07) possibly_damaging(0.806) TCGA-BT-A20T-01 1 176903364 176903364 C T ASTN1 Silent p.E865E 0.12 TCGA-BT-A20T-01 1 183542321 183542321 G A NCF2 Missense_Mutation p.T203M 0.40 tolerated(0.25) possibly_damaging(0.817) TCGA-BT-A20T-01 1 185144079 185144079 G C SWT1 Missense_Mutation p.R267T 0.38 deleterious(0.03) benign(0.013) TCGA-BT-A20T-01 1 193038174 193038174 G C TROVE2 5'UTR 0.41 TCGA-BT-A20T-01 1 197390429 197390429 G A CRB1 Missense_Mutation p.D491N 0.40 tolerated(1) benign(0) TCGA-BT-A20T-01 1 21226289 21226289 G A EIF4G3 Missense_Mutation p.R584C 0.05 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-BT-A20T-01 1 216850784 216850784 A G ESRRG Missense_Mutation p.S41P 0.46 tolerated_low_confidence(0.3) benign(0.001) TCGA-BT-A20T-01 1 220825393 220825393 C T MARK1 Missense_Mutation p.S546L 0.35 tolerated(0.06) benign(0.075) TCGA-BT-A20T-01 1 237875065 237875065 G C RYR2 Missense_Mutation p.Q3417H 0.10 probably_damaging(0.937) TCGA-BT-A20T-01 1 240990424 240990424 T A RGS7 Missense_Mutation p.M220L 0.29 tolerated(0.66) benign(0.056) TCGA-BT-A20T-01 1 242428713 242428713 G A PLD5 Missense_Mutation p.S178L 0.32 deleterious(0.01) benign(0.44) TCGA-BT-A20T-01 1 247323048 247323048 G A ZNF124 Missense_Mutation p.S33F 0.29 deleterious(0.02) probably_damaging(0.943) TCGA-BT-A20T-01 1 247464253 247464253 G A ZNF496 Silent p.F444F 0.44 TCGA-BT-A20T-01 1 31478834 31478834 G C PUM1 Missense_Mutation p.Q196E 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.48) TCGA-BT-A20T-01 1 3800260 3800260 C T DFFB Silent p.P324P 0.29 TCGA-BT-A20T-01 1 39341511 39341511 G A GJA9 Missense_Mutation p.S87L 0.28 deleterious(0) benign(0.286) TCGA-BT-A20T-01 1 53699276 53699276 C T MAGOH Missense_Mutation p.D66N 0.31 deleterious(0.01) benign(0.157) TCGA-BT-A20T-01 1 65145288 65145288 G A CACHD1 Silent p.V1034V 0.31 TCGA-BT-A20T-01 1 70488897 70488897 G A LRRC7 Nonsense_Mutation p.W507* 0.38 TCGA-BT-A20T-01 1 78045314 78045314 C G ZZZ3 Splice_Site p.X661_splice 0.35 TCGA-BT-A20T-01 1 957838 957838 G A AGRN Silent p.V153V 0.40 TCGA-BT-A20T-01 20 10018917 10018917 G A ANKEF1 5'UTR 0.33 TCGA-BT-A20T-01 20 2847241 2847241 C G VPS16 3'UTR 0.36 TCGA-BT-A20T-01 20 39990777 39990777 C T EMILIN3 Missense_Mutation p.E478K 0.17 deleterious(0) probably_damaging(0.998) TCGA-BT-A20T-01 20 46265061 46265061 C G NCOA3 Nonsense_Mutation p.S644* 0.38 TCGA-BT-A20T-01 20 47691370 47691370 G C CSE1L Missense_Mutation p.R372T 0.30 deleterious(0) probably_damaging(0.987) TCGA-BT-A20T-01 20 60891982 60891982 C T LAMA5 Missense_Mutation p.D2537N 0.22 benign(0.053) TCGA-BT-A20T-01 21 27840756 27840756 G A CYYR1 3'UTR 0.26 TCGA-BT-A20T-01 21 33974135 33974135 G C C21orf59 3'UTR 0.32 TCGA-BT-A20T-01 21 37710178 37710178 C G MORC3 Missense_Mutation p.Q132E 0.33 deleterious(0) probably_damaging(0.994) TCGA-BT-A20T-01 21 38444858 38444858 C T PIGP Silent p.L10L 0.23 TCGA-BT-A20T-01 21 46925183 46925183 C T COL18A1 Missense_Mutation p.H1182Y 0.29 benign(0.058) TCGA-BT-A20T-01 22 19864662 19864662 C A TXNRD2 Missense_Mutation p.G514V 0.68 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 22 19959927 19959927 C G ARVCF Missense_Mutation p.E883D 0.20 tolerated(0.39) possibly_damaging(0.497) TCGA-BT-A20T-01 22 23482515 23482515 C T RTDR1 Silent p.L31L 0.23 TCGA-BT-A20T-01 22 30722669 30722669 C T TBC1D10A Missense_Mutation p.E68K 0.16 tolerated(0.45) benign(0.002) TCGA-BT-A20T-01 22 36960929 36960929 C T CACNG2 Silent p.L147L 0.41 TCGA-BT-A20T-01 22 39708981 39708981 C T RPL3 Silent p.L392L 0.21 TCGA-BT-A20T-01 22 42321519 42321519 C T TNFRSF13C Missense_Mutation p.G136E 0.29 tolerated(0.34) possibly_damaging(0.779) TCGA-BT-A20T-01 22 43089310 43089310 G A A4GALT Silent p.L216L 0.26 TCGA-BT-A20T-01 22 43520163 43520163 C T BIK Silent p.F45F 0.34 TCGA-BT-A20T-01 22 43972201 43972201 C T EFCAB6 Silent p.Q1132Q 0.24 TCGA-BT-A20T-01 22 46725395 46725395 G C GTSE1 Silent p.L689L 0.33 TCGA-BT-A20T-01 2 100210124 100210124 C G AFF3 Missense_Mutation p.E692Q 0.32 deleterious(0) possibly_damaging(0.85) TCGA-BT-A20T-01 2 101580599 101580599 C T NPAS2 Silent p.F226F 0.39 TCGA-BT-A20T-01 2 128605685 128605685 T C POLR2D Missense_Mutation p.Y142C 0.32 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-BT-A20T-01 2 130737623 130737623 C G RAB6C 5'UTR 0.15 TCGA-BT-A20T-01 2 136570082 136570082 G A LCT Missense_Mutation p.P718S 0.34 tolerated(0.07) benign(0.305) TCGA-BT-A20T-01 2 1653407 1653407 G T PXDN Missense_Mutation p.N715K 0.45 tolerated(0.63) benign(0.019) TCGA-BT-A20T-01 2 166848324 166848324 G C SCN1A Missense_Mutation p.Q1821E 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-BT-A20T-01 2 179400360 179400360 C G TTN Missense_Mutation p.R33661T 0.33 TCGA-BT-A20T-01 2 179584463 179584463 G C TTN Nonsense_Mutation p.S7919* 0.38 TCGA-BT-A20T-01 2 198498722 198498722 C G RFTN2 Splice_Site p.X147_splice 0.29 TCGA-BT-A20T-01 2 203806617 203806617 G A CARF 5'UTR 0.30 TCGA-BT-A20T-01 2 207175392 207175392 G A ZDBF2 Missense_Mutation p.R2047Q 0.32 tolerated(0.81) benign(0.01) TCGA-BT-A20T-01 2 219483480 219483480 G T PLCD4 Missense_Mutation p.Q120H 0.20 tolerated(0.09) probably_damaging(0.909) TCGA-BT-A20T-01 2 220161229 220161229 C A PTPRN Missense_Mutation p.D774Y 0.29 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 2 224743338 224743338 C T WDFY1 3'UTR 0.38 TCGA-BT-A20T-01 2 225670030 225670030 C G DOCK10 Missense_Mutation p.R1315T 0.44 deleterious(0.02) possibly_damaging(0.781) TCGA-BT-A20T-01 2 228881535 228881535 C G SPHKAP Missense_Mutation p.E1345D 0.27 tolerated(0.15) benign(0.012) TCGA-BT-A20T-01 2 231775157 231775157 T A GPR55 Missense_Mutation p.D174V 0.45 deleterious(0.01) benign(0.403) TCGA-BT-A20T-01 2 234749700 234749700 G A HJURP Missense_Mutation p.R576C 0.36 deleterious(0) probably_damaging(0.998) TCGA-BT-A20T-01 2 238277457 238277457 C T COL6A3 Missense_Mutation p.G1550E 0.25 probably_damaging(0.998) TCGA-BT-A20T-01 2 240036766 240036766 C G HDAC4 Missense_Mutation p.E587Q 0.45 tolerated(0.49) benign(0.056) TCGA-BT-A20T-01 2 242066101 242066101 G C PASK Silent p.L743L 0.40 TCGA-BT-A20T-01 2 242066280 242066280 G A PASK Missense_Mutation p.P684S 0.43 tolerated(0.45) possibly_damaging(0.527) TCGA-BT-A20T-01 2 242192385 242192385 C G HDLBP Missense_Mutation p.K453N 0.14 deleterious(0) possibly_damaging(0.512) TCGA-BT-A20T-01 2 25978935 25978935 C G ASXL2 Missense_Mutation p.E330Q 0.32 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 2 25994376 25994376 G A ASXL2 Missense_Mutation p.S146L 0.25 deleterious(0) possibly_damaging(0.788) TCGA-BT-A20T-01 2 25994388 25994388 G T ASXL2 Nonsense_Mutation p.S142* 0.24 TCGA-BT-A20T-01 2 26684967 26684967 C T OTOF Missense_Mutation p.D1759N 0.42 deleterious(0) probably_damaging(0.999) TCGA-BT-A20T-01 2 27501157 27501157 G A DNAJC5G Silent p.G159G 0.11 TCGA-BT-A20T-01 2 36808439 36808439 C T FEZ2 Missense_Mutation p.E210K 0.35 deleterious(0.01) probably_damaging(0.966) TCGA-BT-A20T-01 2 43458382 43458382 G C THADA Nonsense_Mutation p.S1856* 0.41 TCGA-BT-A20T-01 2 69173329 69173329 G A GKN2 Intron 0.51 TCGA-BT-A20T-01 2 74686773 74686773 C T WBP1 Nonsense_Mutation p.R25* 0.27 TCGA-BT-A20T-01 2 80529770 80529770 G A LRRTM1 Missense_Mutation p.T392I 0.19 tolerated(0.21) benign(0.351) TCGA-BT-A20T-01 2 80646667 80646667 G A CTNNA2 Missense_Mutation p.E411K 0.05 deleterious(0.01) benign(0.236) TCGA-BT-A20T-01 2 85921520 85921520 G A GNLY 5'UTR 0.32 TCGA-BT-A20T-01 2 98846623 98846623 G C VWA3B Missense_Mutation p.W754S 0.39 tolerated(0.49) benign(0.002) TCGA-BT-A20T-01 3 113673211 113673211 C A ZDHHC23 Silent p.R276R 0.29 TCGA-BT-A20T-01 3 122247537 122247537 C T PARP9 Missense_Mutation p.E747K 0.37 tolerated(0.08) benign(0.016) TCGA-BT-A20T-01 3 124738228 124738228 G C HEG1 Nonsense_Mutation p.S489* 0.18 TCGA-BT-A20T-01 3 128753034 128753034 C T EFCC1 Silent p.L437L 0.29 TCGA-BT-A20T-01 3 128982840 128982840 G C COPG1 Missense_Mutation p.E408Q 0.33 deleterious(0.01) probably_damaging(0.949) TCGA-BT-A20T-01 3 129023617 129023617 G A HMCES Silent p.L338L 0.50 TCGA-BT-A20T-01 3 133341981 133341982 TT - TOPBP1 Frame_Shift_Del p.K1044Rfs*12 0.29 TCGA-BT-A20T-01 3 135721655 135721655 C T PPP2R3A Missense_Mutation p.H439Y 0.36 tolerated_low_confidence(1) benign(0.016) TCGA-BT-A20T-01 3 15124021 15124021 G T ZFYVE20 Silent p.I231I 0.53 TCGA-BT-A20T-01 3 156396062 156396062 C - TIPARP Frame_Shift_Del p.N192Kfs*15 0.29 TCGA-BT-A20T-01 3 31710301 31710301 C T OSBPL10 Silent p.V643V 0.54 TCGA-BT-A20T-01 3 44612209 44612209 G C ZKSCAN7 Missense_Mutation p.R536T 0.57 tolerated(0.48) possibly_damaging(0.493) TCGA-BT-A20T-01 3 46939420 46939420 C T PTH1R Missense_Mutation p.P130L 0.54 tolerated(0.09) benign(0.008) TCGA-BT-A20T-01 3 47281297 47281297 G C KIF9 Intron 0.45 TCGA-BT-A20T-01 3 47281434 47281434 G C KIF9 Intron 0.36 TCGA-BT-A20T-01 3 49043565 49043565 C G P4HTM Silent p.V472V 0.45 TCGA-BT-A20T-01 3 49161498 49161498 G A LAMB2 Nonsense_Mutation p.Q1154* 0.52 TCGA-BT-A20T-01 3 52526262 52526262 C T NISCH Missense_Mutation p.P1427S 0.51 tolerated(0.07) probably_damaging(0.968) TCGA-BT-A20T-01 3 57827095 57827095 C G SLMAP Nonsense_Mutation p.S139* 0.15 TCGA-BT-A20T-01 4 100463168 100463168 C G C4orf17 Missense_Mutation p.Q328E 0.22 tolerated(0.44) benign(0.407) TCGA-BT-A20T-01 4 103228665 103228665 C A SLC39A8 Missense_Mutation p.K160N 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-BT-A20T-01 4 123192861 123192861 G A KIAA1109 Missense_Mutation p.E2728K 0.20 benign(0.031) TCGA-BT-A20T-01 4 149357276 149357276 G C NR3C2 Missense_Mutation p.S246C 0.33 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-BT-A20T-01 4 15716979 15716979 C G BST1 Missense_Mutation p.I202M 0.32 tolerated(0.07) possibly_damaging(0.496) TCGA-BT-A20T-01 4 159092463 159092463 C G FAM198B Missense_Mutation p.R22P 0.19 tolerated(0.16) possibly_damaging(0.655) TCGA-BT-A20T-01 4 159590752 159590752 G C C4orf46 3'UTR 0.22 TCGA-BT-A20T-01 4 160273906 160273906 G A RAPGEF2 Missense_Mutation p.R1151Q 0.34 tolerated_low_confidence(0.16) probably_damaging(0.98) TCGA-BT-A20T-01 4 1806119 1806119 G A FGFR3 Missense_Mutation p.G382R 0.41 tolerated(0.14) probably_damaging(0.925) TCGA-BT-A20T-01 4 185941474 185941474 G C HELT Missense_Mutation p.E178Q 0.27 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 4 189026057 189026057 C G TRIML2 Silent p.S23S 0.23 TCGA-BT-A20T-01 4 1957529 1957529 G A WHSC1 Silent p.K876K 0.33 TCGA-BT-A20T-01 4 26959236 26959236 C T STIM2 Silent p.F95F 0.20 TCGA-BT-A20T-01 4 4317400 4317400 A T ZBTB49 Missense_Mutation p.I472F 0.43 deleterious(0) probably_damaging(0.969) TCGA-BT-A20T-01 4 47322172 47322172 G C GABRB1 Missense_Mutation p.D164H 0.25 deleterious(0) probably_damaging(0.977) TCGA-BT-A20T-01 4 57829697 57829697 C G NOA1 Missense_Mutation p.K672N 0.36 deleterious(0.03) benign(0.339) TCGA-BT-A20T-01 4 66230766 66230766 G A EPHA5 Silent p.N735N 0.41 TCGA-BT-A20T-01 4 68930646 68930646 G C TMPRSS11F Missense_Mutation p.Q258E 0.37 tolerated(0.25) benign(0.024) TCGA-BT-A20T-01 5 120021694 120021694 G A PRR16 Missense_Mutation p.D46N 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BT-A20T-01 5 131679478 131679478 G C SLC22A4 Missense_Mutation p.D536H 0.16 tolerated(0.12) benign(0.003) TCGA-BT-A20T-01 5 137506551 137506551 C G BRD8 Missense_Mutation p.R137T 0.72 deleterious(0.01) probably_damaging(0.972) TCGA-BT-A20T-01 5 139941409 139941409 G A APBB3 Intron 0.34 TCGA-BT-A20T-01 5 140482301 140482301 C T PCDHB3 Silent p.L690L 0.08 TCGA-BT-A20T-01 5 140736303 140736303 G A PCDHGA4 Silent p.G512G 0.22 TCGA-BT-A20T-01 5 140856170 140856170 G A PCDHGC3 Missense_Mutation p.D163N 0.24 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 5 147715197 147715197 C G SPINK9 Silent p.V7V 0.31 TCGA-BT-A20T-01 5 149437110 149437110 C T CSF1R Missense_Mutation p.M726I 0.21 deleterious(0) probably_damaging(0.91) TCGA-BT-A20T-01 5 16067555 16067555 C T MARCH11 3'UTR 0.04 TCGA-BT-A20T-01 5 176721219 176721219 G C NSD1 Missense_Mutation p.E2284Q 0.28 tolerated_low_confidence(0.15) benign(0.079) TCGA-BT-A20T-01 5 178410024 178410024 C T GRM6 Missense_Mutation p.V775M 0.25 deleterious(0.04) possibly_damaging(0.832) TCGA-BT-A20T-01 5 34008107 34008107 G C AMACR Missense_Mutation p.I6M 0.29 deleterious(0) possibly_damaging(0.882) TCGA-BT-A20T-01 5 37605251 37605251 C T WDR70 Missense_Mutation p.P335S 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-BT-A20T-01 5 41929935 41929935 G A FBXO4 Missense_Mutation p.E188K 0.42 deleterious(0.02) possibly_damaging(0.718) TCGA-BT-A20T-01 5 43295898 43295898 C T HMGCS1 Silent p.Q287Q 0.44 TCGA-BT-A20T-01 5 70308614 70308614 C T NAIP Silent p.Q43Q 0.31 TCGA-BT-A20T-01 5 79855427 79855427 G A ANKRD34B Missense_Mutation p.L138F 0.08 deleterious(0) probably_damaging(0.995) TCGA-BT-A20T-01 5 99897787 99897787 G C FAM174A Missense_Mutation p.R155T 0.23 deleterious(0) probably_damaging(0.977) TCGA-BT-A20T-01 6 105581450 105581450 C A BVES Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-BT-A20T-01 6 12164682 12164682 G A HIVEP1 Silent p.V2715V 0.23 TCGA-BT-A20T-01 6 123100928 123100928 G T FABP7 5'UTR 0.60 TCGA-BT-A20T-01 6 128040891 128040891 C G THEMIS Missense_Mutation p.Q651H 0.59 deleterious_low_confidence(0) possibly_damaging(0.568) TCGA-BT-A20T-01 6 145948488 145948488 A T EPM2A 3'UTR 0.41 TCGA-BT-A20T-01 6 147648368 147648368 G A STXBP5 Missense_Mutation p.R679Q 0.31 tolerated(1) benign(0) TCGA-BT-A20T-01 6 150387242 150387242 G A ULBP3 Nonsense_Mutation p.Q49* 0.36 TCGA-BT-A20T-01 6 151914325 151914325 C A CCDC170 Missense_Mutation p.D459E 0.49 tolerated(0.21) possibly_damaging(0.454) TCGA-BT-A20T-01 6 155579176 155579176 T C TFB1M Missense_Mutation p.R279G 0.23 tolerated(0.07) benign(0.079) TCGA-BT-A20T-01 6 27775562 27775562 G C HIST1H2BL Nonsense_Mutation p.Y41* 0.31 TCGA-BT-A20T-01 6 28327555 28327555 G A ZKSCAN3 Silent p.L64L 0.31 TCGA-BT-A20T-01 6 29641454 29641454 C A ZFP57 Missense_Mutation p.C145F 0.36 tolerated(0.7) possibly_damaging(0.481) TCGA-BT-A20T-01 6 36652060 36652060 G T CDKN1A Missense_Mutation p.G61V 0.30 deleterious(0) probably_damaging(1) TCGA-BT-A20T-01 6 43155601 43155601 G A CUL9 Missense_Mutation p.E578K 0.33 tolerated(0.42) benign(0.004) TCGA-BT-A20T-01 6 43194090 43194090 G A DNPH1 Silent p.D80D 0.18 TCGA-BT-A20T-01 6 43304812 43304812 G C ZNF318 3'UTR 0.69 TCGA-BT-A20T-01 6 43472671 43472671 G A TJAP1 Missense_Mutation p.S251N 0.37 deleterious(0) benign(0.035) TCGA-BT-A20T-01 6 76720899 76720899 G T IMPG1 Missense_Mutation p.H284N 0.32 deleterious(0.02) possibly_damaging(0.816) TCGA-BT-A20T-01 6 89974215 89974215 G A GABRR2 Silent p.F334F 0.42 TCGA-BT-A20T-01 7 100075057 100075057 T A TSC22D4 Missense_Mutation p.E202V 0.46 deleterious_low_confidence(0.01) benign(0.125) TCGA-BT-A20T-01 7 100458882 100458882 C G SLC12A9 Missense_Mutation p.F447L 0.24 deleterious(0) probably_damaging(0.998) TCGA-BT-A20T-01 7 100817751 100817751 C T NAT16 Intron 0.33 TCGA-BT-A20T-01 7 111422961 111422961 C T DOCK4 Missense_Mutation p.E1173K 0.22 deleterious(0) probably_damaging(0.983) TCGA-BT-A20T-01 7 115580778 115580778 C G TFEC Missense_Mutation p.D291H 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-BT-A20T-01 7 124475365 124475365 T A POT1 Silent p.P491P 0.34 TCGA-BT-A20T-01 7 142247175 142247175 G C TRBV7-3 Missense_Mutation p.S94C 0.35 TCGA-BT-A20T-01 7 142880972 142880972 T C TAS2R39 Missense_Mutation p.I154T 0.37 deleterious(0) probably_damaging(0.978) TCGA-BT-A20T-01 7 148769089 148769089 G A ZNF786 Silent p.L259L 0.34 TCGA-BT-A20T-01 7 149508033 149508033 C T SSPO RNA 0.33 TCGA-BT-A20T-01 7 149509070 149509070 C T SSPO RNA 0.44 TCGA-BT-A20T-01 7 152027735 152027735 C T KMT2C Missense_Mutation p.E114K 0.17 benign(0.354) TCGA-BT-A20T-01 7 154561137 154561137 G A DPP6 Silent p.L298L 0.35 TCGA-BT-A20T-01 7 23236339 23236339 G A NUPL2 Missense_Mutation p.R188K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A20T-01 7 44739835 44739835 A G OGDH Silent p.L842L 0.44 TCGA-BT-A20T-01 7 48314904 48314904 G C ABCA13 Missense_Mutation p.E1881Q 0.39 possibly_damaging(0.776) TCGA-BT-A20T-01 7 48315084 48315084 G C ABCA13 Missense_Mutation p.E1941Q 0.34 benign(0.063) TCGA-BT-A20T-01 7 6859399 6859399 G A CCZ1B Silent p.I232I 0.29 TCGA-BT-A20T-01 7 91630326 91630326 G C AKAP9 Missense_Mutation p.Q365H 0.18 benign(0.009) TCGA-BT-A20T-01 7 99909483 99909483 G C SPDYE3 Missense_Mutation p.E219Q 0.34 tolerated(0.31) benign(0.025) TCGA-BT-A20T-01 8 101153669 101153669 T C FBXO43 Silent p.L271L 0.33 TCGA-BT-A20T-01 8 109228656 109228656 C T EIF3E Silent p.L312L 0.15 TCGA-BT-A20T-01 8 117778902 117778902 C T UTP23 Silent p.F20F 0.54 TCGA-BT-A20T-01 8 118816983 118816983 T A EXT1 Missense_Mutation p.Y678F 0.34 deleterious(0.03) benign(0.437) TCGA-BT-A20T-01 8 144681868 144681868 C G TIGD5 Missense_Mutation p.L599V 0.39 deleterious(0) probably_damaging(0.996) TCGA-BT-A20T-01 8 19690831 19690831 G C INTS10 Missense_Mutation p.R510T 0.25 tolerated(0.18) benign(0.027) TCGA-BT-A20T-01 8 24178763 24178763 C T ADAM28 Silent p.I227I 0.16 TCGA-BT-A20T-01 8 27398124 27398124 G A EPHX2 Missense_Mutation p.E444K 0.39 tolerated(0.05) benign(0.388) TCGA-BT-A20T-01 8 33346598 33346598 G A MAK16 Silent p.Q111Q 0.39 TCGA-BT-A20T-01 8 37729146 37729146 C G RAB11FIP1 Missense_Mutation p.K1058N 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.714) TCGA-BT-A20T-01 8 38271717 38271717 C T FGFR1 Silent p.L744L 0.42 TCGA-BT-A20T-01 8 69046488 69046488 C T PREX2 Nonsense_Mutation p.Q1321* 0.40 TCGA-BT-A20T-01 8 7308697 7308697 C T SPAG11B Intron 0.35 TCGA-BT-A20T-01 8 77767490 77767490 C T ZFHX4 Missense_Mutation p.S2778F 0.41 benign(0.237) TCGA-BT-A20T-01 8 87755883 87755883 C G CNGB3 5'UTR 0.49 TCGA-BT-A20T-01 9 111741687 111741687 G C CTNNAL1 Missense_Mutation p.I325M 0.57 deleterious(0.01) possibly_damaging(0.756) TCGA-BT-A20T-01 9 139945381 139945381 G C ENTPD2 Silent p.L249L 0.30 TCGA-BT-A20T-01 9 139945964 139945964 G A ENTPD2 Silent p.L128L 0.37 TCGA-BT-A20T-01 9 140058079 140058079 G C GRIN1 Missense_Mutation p.R822P 0.65 tolerated(0.12) probably_damaging(0.916) TCGA-BT-A20T-01 9 5089767 5089767 G A JAK2 Missense_Mutation p.E889K 0.65 tolerated(0.69) benign(0.204) TCGA-BT-A20T-01 9 73233873 73233873 G A TRPM3 Silent p.H744H 0.58 TCGA-BT-A20T-01 9 95274343 95274343 G A ECM2 Silent p.L374L 0.72 TCGA-BT-A20T-01 X 101396306 101396306 C T TCEAL6 5'UTR 0.22 TCGA-BT-A20T-01 X 10176604 10176604 G T CLCN4 Missense_Mutation p.V455F 0.78 tolerated(0.11) benign(0.006) TCGA-BT-A20T-01 X 129537824 129537824 C T RBMX2 Missense_Mutation p.S57L 0.42 deleterious(0) probably_damaging(0.983) TCGA-BT-A20T-01 X 132161712 132161712 C T USP26 Silent p.K179K 0.34 TCGA-BT-A20T-01 X 3002367 3002367 G A ARSF Missense_Mutation p.G164S 0.82 deleterious(0) probably_damaging(0.999) TCGA-BT-A20T-01 X 44820575 44820575 T - KDM6A Frame_Shift_Del p.V91Gfs*9 0.45 TCGA-BT-A20U-01 10 15130774 15130774 C G ACBD7 5'UTR 0.24 TCGA-BT-A20U-01 10 32098165 32098165 G A ARHGAP12 Silent p.V707V 0.10 TCGA-BT-A20U-01 10 49633981 49633981 G C MAPK8 Missense_Mutation p.E247Q 0.15 deleterious(0.03) benign(0.04) TCGA-BT-A20U-01 10 49634089 49634089 G C MAPK8 Missense_Mutation p.D283H 0.07 deleterious(0.04) benign(0.009) TCGA-BT-A20U-01 10 62553724 62553724 G A CDK1 Silent p.K295K 0.18 TCGA-BT-A20U-01 10 63170341 63170341 G A TMEM26 Silent p.I282I 0.31 TCGA-BT-A20U-01 10 90697972 90697972 G T ACTA2 Missense_Mutation p.T279N 0.11 deleterious_low_confidence(0.03) benign(0.029) TCGA-BT-A20U-01 11 108115627 108115627 C T ATM Missense_Mutation p.L259F 0.05 deleterious(0.04) benign(0.26) TCGA-BT-A20U-01 11 118127913 118127913 G A MPZL2 Intron 0.18 TCGA-BT-A20U-01 11 125281675 125281675 G A PKNOX2 Missense_Mutation p.E284K 0.24 tolerated(0.14) benign(0.138) TCGA-BT-A20U-01 11 63403040 63403040 C G ATL3 Missense_Mutation p.G334A 0.05 deleterious(0) probably_damaging(0.998) TCGA-BT-A20U-01 11 65161533 65161533 G A FRMD8 Missense_Mutation p.R126Q 0.27 tolerated(0.24) benign(0.28) TCGA-BT-A20U-01 11 74547657 74547657 G A RNF169 Missense_Mutation p.R670Q 0.18 tolerated(0.07) benign(0.037) TCGA-BT-A20U-01 11 76175124 76175124 G A C11orf30 Silent p.K277K 0.20 TCGA-BT-A20U-01 12 102043044 102043044 G C MYBPC1 Missense_Mutation p.K376N 0.20 deleterious(0) probably_damaging(0.967) TCGA-BT-A20U-01 12 123340550 123340550 G A HIP1R Silent p.L384L 0.27 TCGA-BT-A20U-01 12 27877118 27877118 G C MRPS35 Missense_Mutation p.R174T 0.17 tolerated(0.07) possibly_damaging(0.543) TCGA-BT-A20U-01 12 30814158 30814158 C T IPO8 Missense_Mutation p.E600K 0.26 tolerated(0.22) benign(0.025) TCGA-BT-A20U-01 12 44166804 44166804 G C IRAK4 Missense_Mutation p.E194Q 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-BT-A20U-01 12 52651959 52651959 C T KRT121P RNA 0.19 TCGA-BT-A20U-01 13 19748219 19748219 G C TUBA3C Missense_Mutation p.S379R 0.24 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-BT-A20U-01 14 23887584 23887584 G A MYH7 Missense_Mutation p.S1335L 0.31 deleterious(0) probably_damaging(0.983) TCGA-BT-A20U-01 14 59819340 59819340 G C DAAM1 Missense_Mutation p.E763Q 0.29 tolerated(0.07) probably_damaging(0.966) TCGA-BT-A20U-01 14 73743889 73743889 G C NUMB Silent p.V451V 0.20 TCGA-BT-A20U-01 15 25446475 25446475 G A SNORD115-17 RNA 0.03 TCGA-BT-A20U-01 15 41822071 41822071 C G RPAP1 Missense_Mutation p.Q350H 0.23 tolerated(0.2) possibly_damaging(0.45) TCGA-BT-A20U-01 15 41823249 41823249 C G RPAP1 Missense_Mutation p.K305N 0.28 tolerated(0.29) benign(0.002) TCGA-BT-A20U-01 15 41823378 41823378 C G RPAP1 Missense_Mutation p.L262F 0.20 deleterious(0) probably_damaging(0.981) TCGA-BT-A20U-01 15 55839115 55839115 G T PYGO1 Nonsense_Mutation p.Y122* 0.22 TCGA-BT-A20U-01 15 72645501 72645501 C T HEXA Missense_Mutation p.E160K 0.21 tolerated(0.63) benign(0.086) TCGA-BT-A20U-01 15 90611183 90611183 G C ZNF710 Missense_Mutation p.D272H 0.21 deleterious(0) probably_damaging(0.993) TCGA-BT-A20U-01 15 90785018 90785018 G A GDPGP1 Missense_Mutation p.R293Q 0.12 deleterious(0) probably_damaging(1) TCGA-BT-A20U-01 16 1841120 1841120 C T IGFALS Silent p.L471L 0.26 TCGA-BT-A20U-01 16 2813372 2813372 G A SRRM2 Missense_Mutation p.R948Q 0.04 unknown(0) TCGA-BT-A20U-01 16 31123424 31123424 C T BCKDK Intron 0.23 TCGA-BT-A20U-01 16 46650007 46650007 G A SHCBP1 Silent p.L149L 0.19 TCGA-BT-A20U-01 16 89788955 89788955 C T ZNF276 Silent p.L74L 0.10 TCGA-BT-A20U-01 17 17723649 17723649 G A SREBF1 Missense_Mutation p.A123V 0.30 tolerated(0.16) benign(0.071) TCGA-BT-A20U-01 17 35445914 35445914 G C ACACA Missense_Mutation p.I2329M 0.04 deleterious(0.03) probably_damaging(0.987) TCGA-BT-A20U-01 17 4017635 4017635 G C ZZEF1 Missense_Mutation p.S275C 0.28 deleterious(0) probably_damaging(1) TCGA-BT-A20U-01 17 42225570 42225570 C T C17orf53 Silent p.A133A 0.04 TCGA-BT-A20U-01 17 42985496 42985496 G C GFAP 3'Flank 0.28 TCGA-BT-A20U-01 17 47218697 47218697 G A B4GALNT2 Missense_Mutation p.A95T 0.22 tolerated(0.42) benign(0.01) TCGA-BT-A20U-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.27 deleterious(0) probably_damaging(0.998) TCGA-BT-A20U-01 17 78936369 78936369 G C RPTOR Silent p.L1267L 0.20 TCGA-BT-A20U-01 18 3090701 3090701 C G MYOM1 Missense_Mutation p.D1322H 0.29 deleterious(0) probably_damaging(0.992) TCGA-BT-A20U-01 19 15536463 15536463 C T WIZ Missense_Mutation p.E400K 0.15 deleterious(0) probably_damaging(0.998) TCGA-BT-A20U-01 19 18085055 18085055 G A KCNN1 Missense_Mutation p.V120I 0.07 tolerated(0.08) benign(0.053) TCGA-BT-A20U-01 19 2737188 2737188 G A SLC39A3 Missense_Mutation p.S23F 0.12 deleterious(0.04) possibly_damaging(0.567) TCGA-BT-A20U-01 19 42906947 42906947 C G LIPE Missense_Mutation p.E927Q 0.20 tolerated(0.17) benign(0.006) TCGA-BT-A20U-01 19 53612598 53612598 G A ZNF415 Missense_Mutation p.R234C 0.29 deleterious(0) benign(0.006) TCGA-BT-A20U-01 19 9048660 9048660 G C MUC16 Missense_Mutation p.L10991V 0.10 benign(0.008) TCGA-BT-A20U-01 1 1203256 1203256 C T UBE2J2 Silent p.S39S 0.07 TCGA-BT-A20U-01 1 144930642 144930642 G C PDE4DIP Intron 0.04 TCGA-BT-A20U-01 1 155252454 155252454 C T HCN3 Silent p.L177L 0.15 TCGA-BT-A20U-01 1 155292388 155292388 C G RUSC1 Missense_Mutation p.S275C 0.05 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-BT-A20U-01 1 160156121 160156121 G A ATP1A4 Missense_Mutation p.E1009K 0.20 deleterious(0) possibly_damaging(0.785) TCGA-BT-A20U-01 1 171621749 171621749 C T MYOC Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) benign(0) TCGA-BT-A20U-01 1 17316492 17316492 C G ATP13A2 Missense_Mutation p.D807H 0.29 tolerated(0.58) possibly_damaging(0.617) TCGA-BT-A20U-01 1 204228731 204228731 C G PLEKHA6 Missense_Mutation p.R221T 0.19 deleterious(0.03) benign(0.06) TCGA-BT-A20U-01 1 237881784 237881784 G A RYR2 Missense_Mutation p.R3506Q 0.32 possibly_damaging(0.722) TCGA-BT-A20U-01 1 245017797 245017797 C G HNRNPU Missense_Mutation p.W811C 0.22 tolerated(0.05) unknown(0) TCGA-BT-A20U-01 1 245809541 245809541 C T KIF26B Silent p.V739V 0.16 TCGA-BT-A20U-01 1 3703763 3703763 C A LRRC47 Nonsense_Mutation p.E243* 0.28 TCGA-BT-A20U-01 1 41448943 41448943 C T CTPS1 Intron 0.15 TCGA-BT-A20U-01 1 46763283 46763283 C T LRRC41 Nonsense_Mutation p.W103* 0.20 TCGA-BT-A20U-01 1 48697274 48697274 G A SLC5A9 Missense_Mutation p.G248E 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A20U-01 1 63902557 63902557 C G ALG6 Missense_Mutation p.Q464E 0.19 tolerated(1) benign(0.001) TCGA-BT-A20U-01 1 64089033 64089033 C A PGM1 5'UTR 0.09 TCGA-BT-A20U-01 1 82451025 82451025 C G LPHN2 Nonsense_Mutation p.S1148* 0.24 TCGA-BT-A20U-01 1 86252137 86252137 C G COL24A1 Missense_Mutation p.R1320T 0.23 tolerated(0.17) benign(0.007) TCGA-BT-A20U-01 1 94354444 94354444 C G GCLM 3'UTR 0.18 TCGA-BT-A20U-01 20 13098330 13098330 C T SPTLC3 Silent p.T370T 0.13 TCGA-BT-A20U-01 20 20024216 20024216 C G CRNKL1 Missense_Mutation p.E459Q 0.04 tolerated(0.08) possibly_damaging(0.463) TCGA-BT-A20U-01 21 33076226 33076226 T A SCAF4 Missense_Mutation p.Y58F 0.06 possibly_damaging(0.67) TCGA-BT-A20U-01 22 29709773 29709773 G A RASL10A Intron 0.23 TCGA-BT-A20U-01 2 137928329 137928329 G A THSD7B Missense_Mutation p.R515H 0.21 deleterious(0) possibly_damaging(0.715) TCGA-BT-A20U-01 2 178098954 178098954 C T NFE2L2 Missense_Mutation p.G31R 0.23 deleterious(0) probably_damaging(0.972) TCGA-BT-A20U-01 2 201515748 201515748 G A AOX1 Missense_Mutation p.E967K 0.14 tolerated(0.86) benign(0.277) TCGA-BT-A20U-01 2 88888374 88888374 G A EIF2AK3 Missense_Mutation p.S404L 0.25 tolerated(0.12) benign(0.05) TCGA-BT-A20U-01 3 105243325 105243325 G A ALCAM Missense_Mutation p.E123K 0.24 deleterious(0) probably_damaging(0.995) TCGA-BT-A20U-01 3 119451310 119451310 C G MAATS1 Silent p.L396L 0.29 TCGA-BT-A20U-01 3 141889249 141889249 G A GK5 Silent p.D453D 0.06 TCGA-BT-A20U-01 3 152018007 152018007 C T MBNL1 Missense_Mutation p.R9W 0.23 deleterious(0) benign(0.026) TCGA-BT-A20U-01 3 176752109 176752109 C A TBL1XR1 Missense_Mutation p.W376L 0.32 deleterious(0) probably_damaging(0.955) TCGA-BT-A20U-01 3 189526295 189526303 GCCAAGTCG - TP63 In_Frame_Del p.K188_A190del 0.27 TCGA-BT-A20U-01 3 38888407 38888407 C G SCN11A Missense_Mutation p.K1718N 0.19 deleterious(0.01) possibly_damaging(0.717) TCGA-BT-A20U-01 3 9483388 9483388 C T SETD5 Nonsense_Mutation p.R308* 0.15 TCGA-BT-A20U-01 4 187549509 187549509 G A FAT1 Nonsense_Mutation p.Q1537* 0.47 TCGA-BT-A20U-01 4 187549807 187549807 G T FAT1 Silent p.I1478I 0.43 TCGA-BT-A20U-01 4 39290425 39290425 C G RFC1 Missense_Mutation p.D1135H 0.24 tolerated_low_confidence(0.11) probably_damaging(0.953) TCGA-BT-A20U-01 4 5633669 5633669 C T EVC2 Missense_Mutation p.D521N 0.05 tolerated(0.63) probably_damaging(0.917) TCGA-BT-A20U-01 4 70080466 70080466 C G UGT2B11 5'Flank 0.18 TCGA-BT-A20U-01 5 11346575 11346575 C T CTNND2 Missense_Mutation p.E513K 0.22 deleterious(0) benign(0.15) TCGA-BT-A20U-01 5 176833003 176833003 G A F12 Missense_Mutation p.H59Y 0.23 tolerated(0.13) benign(0.06) TCGA-BT-A20U-01 5 82868358 82868358 T G VCAN Missense_Mutation p.Y3287D 0.18 deleterious(0) probably_damaging(0.996) TCGA-BT-A20U-01 6 136599223 136599223 G A BCLAF1 Nonsense_Mutation p.Q266* 0.12 TCGA-BT-A20U-01 6 144803379 144803379 G A UTRN Missense_Mutation p.R1181K 0.22 tolerated(0.96) benign(0.047) TCGA-BT-A20U-01 6 26452381 26452381 C T BTN3A3 Silent p.F499F 0.04 TCGA-BT-A20U-01 6 88317511 88317511 C T ORC3 Missense_Mutation p.S183L 0.25 tolerated(0.27) benign(0.008) TCGA-BT-A20U-01 7 116409705 116409705 G A MET Missense_Mutation p.D882N 0.23 tolerated(0.96) benign(0.008) TCGA-BT-A20U-01 7 28997432 28997432 G A AC005013.5 RNA 0.33 TCGA-BT-A20U-01 7 55459492 55459492 C G LANCL2 Missense_Mutation p.H71D 0.28 tolerated(0.55) benign(0) TCGA-BT-A20U-01 7 77010667 77010667 A G GSAP Silent p.I177I 0.19 TCGA-BT-A20U-01 8 105361016 105361016 G A DCSTAMP Missense_Mutation p.R79Q 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A20U-01 8 11616017 11616017 G T GATA4 3'UTR 0.08 TCGA-BT-A20U-01 8 27762132 27762132 C G SCARA5 Intron 0.19 TCGA-BT-A20U-01 8 48874100 48874100 C G MCM4 Missense_Mutation p.S32C 0.31 tolerated(0.06) benign(0.293) TCGA-BT-A20U-01 8 8185504 8185504 C T SGK223 Missense_Mutation p.G930R 0.23 benign(0.177) TCGA-BT-A20U-01 9 17464544 17464544 G C CNTLN Missense_Mutation p.D1152H 0.19 tolerated(0.05) possibly_damaging(0.73) TCGA-BT-A20U-01 X 134427903 134427903 A T ZNF75D Missense_Mutation p.F55Y 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-BT-A20U-01 X 153277189 153277189 C T IRAK1 3'UTR 0.29 TCGA-BT-A20U-01 X 30577604 30577604 C T CXorf21 Missense_Mutation p.S290N 0.12 tolerated(0.37) benign(0.122) TCGA-BT-A20U-01 X 53277900 53277900 C G IQSEC2 Intron 0.20 TCGA-BT-A20U-01 X 54497828 54497828 G T FGD1 Missense_Mutation p.R134S 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-BT-A20U-01 X 73962899 73962899 G C KIAA2022 Nonsense_Mutation p.S498* 0.31 TCGA-BT-A20V-01 10 122334734 122334734 C G PPAPDC1A Silent p.L179L 0.18 TCGA-BT-A20V-01 10 17083212 17083212 C T CUBN Silent p.E1279E 0.46 TCGA-BT-A20V-01 10 26492008 26492008 C T MYO3A Nonsense_Mutation p.Q1568* 0.21 TCGA-BT-A20V-01 10 37438756 37438756 A T ANKRD30A Missense_Mutation p.N486Y 0.14 deleterious(0.01) benign(0.193) TCGA-BT-A20V-01 11 123676993 123676993 C T OR6M1 Missense_Mutation p.R22Q 0.33 tolerated(1) benign(0.002) TCGA-BT-A20V-01 11 130318901 130318901 C T ADAMTS15 Silent p.F11F 0.17 TCGA-BT-A20V-01 11 19252338 19252338 C G E2F8 Silent p.V370V 0.33 TCGA-BT-A20V-01 11 20385976 20385976 G T HTATIP2 Missense_Mutation p.V99L 0.25 tolerated(0.41) benign(0.017) TCGA-BT-A20V-01 11 56113882 56113882 C T OR8K1 Missense_Mutation p.A123V 0.12 tolerated_low_confidence(0.07) benign(0.222) TCGA-BT-A20V-01 11 609398 609398 G A PHRF1 Silent p.L1313L 0.12 TCGA-BT-A20V-01 11 63884475 63884475 C T FLRT1 Missense_Mutation p.R246C 0.25 deleterious(0.03) possibly_damaging(0.894) TCGA-BT-A20V-01 11 7652173 7652173 C T PPFIBP2 Missense_Mutation p.L328F 0.19 tolerated(0.17) benign(0.128) TCGA-BT-A20V-01 11 9597610 9597612 GTC - WEE1 In_Frame_Del p.R253del 0.30 TCGA-BT-A20V-01 12 102108412 102108412 G C CHPT1 Missense_Mutation p.L184F 0.20 deleterious(0) probably_damaging(0.994) TCGA-BT-A20V-01 12 105535024 105535024 G C KIAA1033 Missense_Mutation p.R596P 0.10 tolerated(0.08) possibly_damaging(0.901) TCGA-BT-A20V-01 12 113355534 113355534 T C OAS1 Intron 0.20 TCGA-BT-A20V-01 12 132405682 132405682 G A ULK1 Missense_Mutation p.R1000H 0.17 tolerated(0.15) benign(0.01) TCGA-BT-A20V-01 12 18234161 18234161 G C RERGL Missense_Mutation p.I194M 0.09 tolerated(0.67) possibly_damaging(0.642) TCGA-BT-A20V-01 12 22688194 22688194 C G C2CD5 Missense_Mutation p.E59Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-BT-A20V-01 12 33579285 33579286 - T SYT10 Frame_Shift_Ins p.S99Rfs*8 0.08 TCGA-BT-A20V-01 12 46320096 46320096 C G SCAF11 Missense_Mutation p.E1130Q 0.19 deleterious(0.03) possibly_damaging(0.709) TCGA-BT-A20V-01 12 46345474 46345474 G C SCAF11 Missense_Mutation p.Q86E 0.20 deleterious(0.02) possibly_damaging(0.512) TCGA-BT-A20V-01 12 52695881 52695881 C T KRT86 Missense_Mutation p.R61C 0.23 tolerated(0.06) probably_damaging(0.993) TCGA-BT-A20V-01 12 53722482 53722482 G A SP7 Silent p.P248P 0.35 TCGA-BT-A20V-01 12 56189844 56189844 C T SARNP Missense_Mutation p.V90M 0.10 deleterious(0.03) possibly_damaging(0.546) TCGA-BT-A20V-01 12 7024917 7024917 C T ENO2 5'UTR 0.73 TCGA-BT-A20V-01 12 7051130 7051130 C G ATN1 3'UTR 0.12 TCGA-BT-A20V-01 12 71960661 71960661 G C LGR5 Missense_Mutation p.V347L 0.22 tolerated(1) benign(0.023) TCGA-BT-A20V-01 12 7883442 7883442 G A CLEC4C Missense_Mutation p.R150W 0.05 tolerated(0.1) benign(0.005) TCGA-BT-A20V-01 12 8672931 8672931 G A CLEC4D Missense_Mutation p.R165H 0.10 tolerated(1) benign(0.004) TCGA-BT-A20V-01 14 32561433 32561433 A G ARHGAP5 Missense_Mutation p.T520A 0.09 tolerated(0.26) benign(0) TCGA-BT-A20V-01 15 45848135 45848135 T C RP11-96O20.2 5'Flank 0.25 TCGA-BT-A20V-01 15 53907975 53907975 C A WDR72 Missense_Mutation p.D810Y 0.19 deleterious(0.01) benign(0.392) TCGA-BT-A20V-01 15 69238675 69238675 G A SPESP1 Missense_Mutation p.A268T 0.24 deleterious(0) probably_damaging(0.998) TCGA-BT-A20V-01 15 72879610 72879610 A T ARIH1 3'UTR 0.40 TCGA-BT-A20V-01 15 91513733 91513734 - GTA PRC1 In_Frame_Ins p.T492dup 0.63 TCGA-BT-A20V-01 16 15026477 15026477 C T NPIPA1 5'Flank 0.29 TCGA-BT-A20V-01 16 24580584 24580584 A G RBBP6 Missense_Mutation p.E858G 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-BT-A20V-01 16 2806515 2806515 G A SRRM2 Silent p.V50V 0.24 TCGA-BT-A20V-01 16 30376495 30376495 G A TBC1D10B Silent p.L365L 0.14 TCGA-BT-A20V-01 16 3169745 3169745 A G ZNF205 Missense_Mutation p.K362E 0.19 deleterious(0) probably_damaging(0.98) TCGA-BT-A20V-01 16 46694417 46694417 G A VPS35 Silent p.S786S 0.21 TCGA-BT-A20V-01 16 64984769 64984769 C T CDH11 Missense_Mutation p.G599R 0.24 deleterious(0.02) benign(0.326) TCGA-BT-A20V-01 16 70694047 70694047 C T IL34 Missense_Mutation p.S229L 0.13 tolerated_low_confidence(0.15) benign(0.001) TCGA-BT-A20V-01 17 12666707 12666707 G A MYOCD Missense_Mutation p.E903K 0.49 deleterious(0.03) probably_damaging(0.998) TCGA-BT-A20V-01 17 39633148 39633148 G C KRT35 3'UTR 0.62 TCGA-BT-A20V-01 17 42928692 42928692 T C EFTUD2 Missense_Mutation p.M957V 0.64 deleterious(0.02) possibly_damaging(0.542) TCGA-BT-A20V-01 17 54912463 54912463 G C DGKE Missense_Mutation p.D103H 0.19 deleterious(0.01) possibly_damaging(0.83) TCGA-BT-A20V-01 18 29867362 29867362 C T GAREM Missense_Mutation p.E400K 0.10 deleterious(0.04) possibly_damaging(0.77) TCGA-BT-A20V-01 18 6237978 6237978 G C L3MBTL4 Missense_Mutation p.L257V 0.17 deleterious(0.01) benign(0.038) TCGA-BT-A20V-01 19 12760960 12760960 C T MAN2B1 Missense_Mutation p.R708Q 0.32 tolerated(0.17) benign(0.086) TCGA-BT-A20V-01 19 22941065 22941065 G T ZNF99 Missense_Mutation p.S549Y 0.32 tolerated(0.56) benign(0.246) TCGA-BT-A20V-01 19 33444638 33444638 G A CEP89 Silent p.D125D 0.15 TCGA-BT-A20V-01 19 34297838 34297838 C T KCTD15 Missense_Mutation p.R105W 0.20 deleterious(0) probably_damaging(0.999) TCGA-BT-A20V-01 19 4159760 4159760 C T CREB3L3 Missense_Mutation p.S186L 0.36 deleterious(0.01) benign(0.349) TCGA-BT-A20V-01 19 44378000 44378000 C G ZNF404 Missense_Mutation p.K122N 0.16 deleterious(0.02) benign(0.004) TCGA-BT-A20V-01 19 6730391 6730391 T G GPR108 Missense_Mutation p.T522P 0.32 deleterious(0.03) possibly_damaging(0.826) TCGA-BT-A20V-01 1 109737054 109737055 - TGC KIAA1324 In_Frame_Ins p.C654dup 0.27 TCGA-BT-A20V-01 1 154932319 154932319 G A PYGO2 Missense_Mutation p.P53S 0.18 tolerated(0.43) benign(0.24) TCGA-BT-A20V-01 1 158152875 158152875 G T CD1D Missense_Mutation p.G272V 0.57 deleterious(0.02) benign(0.236) TCGA-BT-A20V-01 1 165378870 165378870 C A RXRG Missense_Mutation p.G324V 0.27 deleterious(0) probably_damaging(1) TCGA-BT-A20V-01 1 16907361 16907361 G A NBPF1 Silent p.D490D 0.06 TCGA-BT-A20V-01 1 173941653 173941653 C A RC3H1 Missense_Mutation p.Q405H 0.15 tolerated(0.12) benign(0.332) TCGA-BT-A20V-01 1 175087873 175087873 C A TNN Missense_Mutation p.L855M 0.16 deleterious(0.01) possibly_damaging(0.612) TCGA-BT-A20V-01 1 175105997 175105997 G A TNN Silent p.A1156A 0.15 TCGA-BT-A20V-01 1 186064392 186064392 A T HMCN1 Missense_Mutation p.N3438Y 0.18 probably_damaging(0.999) TCGA-BT-A20V-01 1 190067861 190067861 G A BRINP3 Missense_Mutation p.R530C 0.15 deleterious(0) probably_damaging(0.996) TCGA-BT-A20V-01 1 205904909 205904909 C T SLC26A9 Missense_Mutation p.A14T 0.07 tolerated(0.21) benign(0.012) TCGA-BT-A20V-01 1 213415278 213415278 G A RPS6KC1 Missense_Mutation p.R820H 0.17 tolerated(0.86) benign(0) TCGA-BT-A20V-01 1 27708287 27708287 G A CD164L2 Missense_Mutation p.P119L 0.11 deleterious(0.01) probably_damaging(1) TCGA-BT-A20V-01 1 38095342 38095342 G A RSPO1 5'UTR 0.12 TCGA-BT-A20V-01 1 78958974 78958974 G A PTGFR Silent p.S182S 0.42 TCGA-BT-A20V-01 1 8395589 8395589 C G SLC45A1 Silent p.L512L 0.14 TCGA-BT-A20V-01 20 13610642 13610642 T A TASP1 Missense_Mutation p.K28N 0.07 tolerated_low_confidence(0.09) benign(0.013) TCGA-BT-A20V-01 20 2446424 2446424 A C SNRPB Missense_Mutation p.V66G 0.24 deleterious(0.01) possibly_damaging(0.826) TCGA-BT-A20V-01 20 32378876 32378876 G A ZNF341 Silent p.T699T 0.10 TCGA-BT-A20V-01 20 4162941 4162941 G A SMOX Missense_Mutation p.R272H 0.45 tolerated(0.1) benign(0.001) TCGA-BT-A20V-01 20 43927067 43927067 G A MATN4 Missense_Mutation p.S390L 0.07 probably_damaging(0.999) TCGA-BT-A20V-01 21 41447093 41447093 G A DSCAM Silent p.L1587L 0.31 TCGA-BT-A20V-01 21 44839282 44839282 G A SIK1 Missense_Mutation p.S399F 0.12 tolerated(0.08) probably_damaging(0.993) TCGA-BT-A20V-01 22 24717698 24717698 T A SPECC1L Missense_Mutation p.N250K 0.22 deleterious(0) possibly_damaging(0.711) TCGA-BT-A20V-01 22 41077528 41077528 C A MCHR1 Missense_Mutation p.P289T 0.31 deleterious(0) probably_damaging(0.999) TCGA-BT-A20V-01 22 44107434 44107434 A C EFCAB6 Missense_Mutation p.S318A 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-BT-A20V-01 2 11053802 11053802 G A KCNF1 Missense_Mutation p.R417H 0.14 tolerated(0.07) possibly_damaging(0.649) TCGA-BT-A20V-01 2 113414767 113414767 G T SLC20A1 Missense_Mutation p.A243S 0.19 deleterious(0.02) possibly_damaging(0.718) TCGA-BT-A20V-01 2 136548255 136548255 G A LCT Missense_Mutation p.R1770W 0.27 deleterious(0) possibly_damaging(0.849) TCGA-BT-A20V-01 2 136587248 136587248 T C LCT Splice_Site p.X241_splice 0.32 TCGA-BT-A20V-01 2 36774266 36774266 G C CRIM1 Missense_Mutation p.Q962H 0.11 deleterious(0.01) benign(0.365) TCGA-BT-A20V-01 2 43801788 43801788 A G THADA Silent p.A472A 0.36 TCGA-BT-A20V-01 2 61315572 61315572 C T KIAA1841 Nonsense_Mutation p.R353* 0.27 TCGA-BT-A20V-01 2 71576712 71576712 G A ZNF638 Missense_Mutation p.D210N 0.04 deleterious(0) probably_damaging(0.998) TCGA-BT-A20V-01 3 111730620 111730620 G A TAGLN3 Missense_Mutation p.M122I 0.11 tolerated(0.3) benign(0.04) TCGA-BT-A20V-01 3 112992056 112992056 C T BOC Missense_Mutation p.R368C 0.20 deleterious(0) possibly_damaging(0.893) TCGA-BT-A20V-01 3 121417163 121417163 T A GOLGB1 Missense_Mutation p.N736I 0.17 possibly_damaging(0.805) TCGA-BT-A20V-01 3 128200720 128200720 C T GATA2 Missense_Mutation p.R362Q 0.04 deleterious(0) probably_damaging(0.986) TCGA-BT-A20V-01 3 132360902 132360902 C A ACAD11 Nonsense_Mutation p.E151* 0.17 TCGA-BT-A20V-01 3 49152979 49152979 G A USP19 Silent p.L594L 0.32 TCGA-BT-A20V-01 3 52384032 52384032 C T DNAH1 Missense_Mutation p.R852C 0.58 benign(0.014) TCGA-BT-A20V-01 3 52491871 52491871 C T NISCH Nonsense_Mutation p.Q36* 0.33 TCGA-BT-A20V-01 3 99891191 99891191 G C CMSS1 Missense_Mutation p.R204P 0.07 tolerated(0.17) possibly_damaging(0.587) TCGA-BT-A20V-01 5 140214266 140214266 G A PCDHA7 Missense_Mutation p.A100T 0.23 tolerated_low_confidence(0.1) benign(0.275) TCGA-BT-A20V-01 5 140604736 140604736 C T PCDHB14 Silent p.D553D 0.41 TCGA-BT-A20V-01 5 145647320 145647320 A - RBM27 Frame_Shift_Del p.K816Nfs*5 0.44 TCGA-BT-A20V-01 5 16672863 16672863 G A MYO10 Silent p.N1748N 0.05 TCGA-BT-A20V-01 5 180661677 180661677 G A TRIM41 Missense_Mutation p.A599T 0.31 tolerated(0.66) benign(0.017) TCGA-BT-A20V-01 5 26889976 26889976 G A CDH9 Missense_Mutation p.T494I 0.27 tolerated(0.14) probably_damaging(0.998) TCGA-BT-A20V-01 5 37157947 37157947 C T C5orf42 Intron 0.46 TCGA-BT-A20V-01 5 45262052 45262052 C T HCN1 Missense_Mutation p.E882K 0.09 tolerated_low_confidence(0.6) benign(0.025) TCGA-BT-A20V-01 5 98228329 98228329 G A CHD1 Silent p.L694L 0.30 TCGA-BT-A20V-01 6 101246710 101246710 A G ASCC3 Missense_Mutation p.I425T 0.36 tolerated(0.41) benign(0.004) TCGA-BT-A20V-01 6 112392596 112392596 A C TUBE1 3'UTR 0.42 TCGA-BT-A20V-01 6 136590744 136590744 T C BCLAF1 Missense_Mutation p.K684E 0.33 tolerated(0.16) possibly_damaging(0.486) TCGA-BT-A20V-01 6 152527300 152527301 - A SYNE1 Intron 0.42 TCGA-BT-A20V-01 6 152639225 152639225 C T SYNE1 Silent p.K5521K 0.07 TCGA-BT-A20V-01 6 160221823 160221823 G C PNLDC1 Silent p.T21T 0.53 TCGA-BT-A20V-01 6 161551943 161551943 A G AGPAT4 3'UTR 0.18 TCGA-BT-A20V-01 6 36489515 36489515 T C STK38 Missense_Mutation p.E129G 0.21 tolerated(0.4) probably_damaging(0.948) TCGA-BT-A20V-01 6 39545902 39545902 G T KIF6 Missense_Mutation p.L371M 0.14 deleterious(0) probably_damaging(0.999) TCGA-BT-A20V-01 7 138943309 138943309 C T UBN2 Missense_Mutation p.R247C 0.21 deleterious(0) probably_damaging(0.997) TCGA-BT-A20V-01 7 1594929 1594929 C T TMEM184A Nonsense_Mutation p.W64* 0.41 TCGA-BT-A20V-01 7 77762250 77762250 C T MAGI2 Silent p.Q1053Q 0.23 TCGA-BT-A20V-01 8 24771630 24771630 G A NEFM Silent p.L108L 0.67 TCGA-BT-A20V-01 8 41573334 41573334 T C ANK1 Missense_Mutation p.I513V 0.19 tolerated(0.06) benign(0.001) TCGA-BT-A20V-01 9 111685159 111685159 C T IKBKAP Missense_Mutation p.G172E 0.40 deleterious(0) probably_damaging(0.997) TCGA-BT-A20V-01 9 139413982 139413982 C A NOTCH1 Missense_Mutation p.D260Y 0.42 deleterious(0) probably_damaging(1) TCGA-BT-A20V-01 9 19786892 19786892 C A SLC24A2 5'UTR 0.03 TCGA-BT-A20V-01 9 21206465 21206465 A T IFNA10 3'UTR 0.37 TCGA-BT-A20V-01 9 35099981 35099981 C T STOML2 3'UTR 0.33 TCGA-BT-A20V-01 X 100807941 100807941 G A ARMCX1 Missense_Mutation p.V10M 0.16 deleterious_low_confidence(0) possibly_damaging(0.475) TCGA-BT-A20V-01 X 152612888 152612888 C T ZNF275 Missense_Mutation p.R249C 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-BT-A20V-01 X 153035386 153035386 C T PLXNB3 Nonsense_Mutation p.Q564* 0.43 TCGA-BT-A20V-01 X 153543532 153543532 C T TKTL1 Missense_Mutation p.R292W 0.18 deleterious(0) probably_damaging(0.995) TCGA-BT-A20V-01 X 3030588 3030588 G A ARSF Silent p.E588E 0.35 TCGA-BT-A20V-01 X 47041570 47041570 A C RBM10 Missense_Mutation p.N599H 0.11 deleterious(0) probably_damaging(0.993) TCGA-BT-A20V-01 X 48378882 48378882 T C PORCN 3'UTR 0.17 TCGA-BT-A20V-01 X 63445139 63445139 G A ASB12 Missense_Mutation p.S131F 0.19 deleterious(0.01) possibly_damaging(0.69) TCGA-BT-A20V-01 X 70340915 70340915 T G MED12 Silent p.G216G 0.34 TCGA-BT-A20V-01 X 76776904 76776904 G C ATRX Missense_Mutation p.L2350V 0.13 benign(0.049) TCGA-BT-A20W-01 10 108459108 108459108 G A SORCS1 Missense_Mutation p.A426V 0.12 deleterious(0.01) possibly_damaging(0.493) TCGA-BT-A20W-01 10 116731913 116731913 G C TRUB1 Missense_Mutation p.D206H 0.39 tolerated(0.08) benign(0.444) TCGA-BT-A20W-01 10 121677504 121677504 G C SEC23IP Missense_Mutation p.M567I 0.10 deleterious(0.03) benign(0.002) TCGA-BT-A20W-01 10 35360158 35360158 C T CUL2 Missense_Mutation p.V49I 0.14 tolerated(0.34) probably_damaging(0.987) TCGA-BT-A20W-01 10 71149006 71149006 G A HK1 Missense_Mutation p.M667I 0.16 tolerated(0.16) possibly_damaging(0.619) TCGA-BT-A20W-01 10 73521607 73521607 G A C10orf54 Missense_Mutation p.R87W 0.06 deleterious(0.03) benign(0.016) TCGA-BT-A20W-01 10 74896575 74896575 C T ECD Missense_Mutation p.E564K 0.05 tolerated(0.34) benign(0.052) TCGA-BT-A20W-01 11 104825572 104825572 C A CASP4 Missense_Mutation p.R55L 0.09 tolerated(0.08) benign(0.055) TCGA-BT-A20W-01 11 104825573 104825573 G A CASP4 Missense_Mutation p.R55W 0.09 tolerated(0.16) benign(0.022) TCGA-BT-A20W-01 11 109294575 109294575 C T C11orf87 Silent p.F72F 0.10 TCGA-BT-A20W-01 11 123813872 123813872 A G OR6T1 Missense_Mutation p.V225A 0.11 deleterious(0) possibly_damaging(0.852) TCGA-BT-A20W-01 11 132306671 132306671 G A OPCML Missense_Mutation p.P223S 0.13 deleterious(0.02) probably_damaging(0.938) TCGA-BT-A20W-01 11 64846850 64846850 T A CDCA5 Missense_Mutation p.K218M 0.07 deleterious(0) probably_damaging(0.915) TCGA-BT-A20W-01 11 6661191 6661191 C T DCHS1 Missense_Mutation p.D552N 0.12 deleterious(0) probably_damaging(0.993) TCGA-BT-A20W-01 11 75282858 75282858 C A SERPINH1 Silent p.A329A 0.14 TCGA-BT-A20W-01 11 7642183 7642183 C T PPFIBP2 Silent p.L212L 0.56 TCGA-BT-A20W-01 11 82549509 82549509 C G PRCP Missense_Mutation p.W419C 0.26 deleterious(0) probably_damaging(0.981) TCGA-BT-A20W-01 12 117274059 117274059 T C RNFT2 Missense_Mutation p.F391S 0.33 deleterious(0) probably_damaging(0.994) TCGA-BT-A20W-01 12 124816920 124816920 C G NCOR2 Missense_Mutation p.K2283N 0.07 probably_damaging(1) TCGA-BT-A20W-01 12 22015990 22015990 T A ABCC9 Splice_Site p.X746_splice 0.08 TCGA-BT-A20W-01 12 5020706 5020706 C A KCNA1 Silent p.T54T 0.30 TCGA-BT-A20W-01 12 86272194 86272198 CAGCC - NTS Frame_Shift_Del p.P71* 0.11 TCGA-BT-A20W-01 12 92539324 92539324 C A BTG1 5'UTR 0.73 TCGA-BT-A20W-01 13 23906256 23906256 C G SACS Missense_Mutation p.S3920T 0.06 benign(0.03) TCGA-BT-A20W-01 13 52661488 52661488 C T NEK5 Missense_Mutation p.E460K 0.23 tolerated(0.29) benign(0.013) TCGA-BT-A20W-01 13 75936294 75936294 G A TBC1D4 Silent p.C316C 0.09 TCGA-BT-A20W-01 14 21109226 21109226 C G OR6S1 Missense_Mutation p.V209L 0.05 tolerated(0.38) probably_damaging(0.998) TCGA-BT-A20W-01 14 34985629 34985629 C G EAPP Missense_Mutation p.D249H 0.05 deleterious(0.03) benign(0.063) TCGA-BT-A20W-01 14 34985718 34985718 C G EAPP Missense_Mutation p.R219T 0.06 deleterious(0.01) possibly_damaging(0.588) TCGA-BT-A20W-01 15 55841124 55841124 C T PYGO1 Missense_Mutation p.R40H 0.08 deleterious(0) probably_damaging(0.996) TCGA-BT-A20W-01 15 74365122 74365122 G T GOLGA6A Missense_Mutation p.L488I 0.11 deleterious(0.02) possibly_damaging(0.856) TCGA-BT-A20W-01 15 92977602 92977602 T A ST8SIA2 Missense_Mutation p.I96N 0.26 probably_damaging(0.923) TCGA-BT-A20W-01 16 2052220 2052220 C T ZNF598 Silent p.S294S 0.21 TCGA-BT-A20W-01 16 27761348 27761348 G C KIAA0556 Missense_Mutation p.A1023P 0.08 deleterious(0) probably_damaging(0.994) TCGA-BT-A20W-01 16 28993242 28993242 C T SPNS1 Missense_Mutation p.S277F 0.06 deleterious(0) probably_damaging(0.964) TCGA-BT-A20W-01 16 30017490 30017490 G A DOC2A 3'UTR 0.31 TCGA-BT-A20W-01 16 65016031 65016031 T G CDH11 Missense_Mutation p.E391D 0.06 tolerated(0.25) probably_damaging(0.994) TCGA-BT-A20W-01 17 40642597 40642597 T G ATP6V0A1 Nonsense_Mutation p.Y379* 0.09 TCGA-BT-A20W-01 17 40652912 40652912 T C ATP6V0A1 Missense_Mutation p.S630P 0.05 tolerated(0.53) benign(0.001) TCGA-BT-A20W-01 17 41244840 41244840 C G BRCA1 Missense_Mutation p.C903S 0.10 tolerated(0.15) benign(0.328) TCGA-BT-A20W-01 17 5365692 5365692 C G DHX33 Missense_Mutation p.V209L 0.06 tolerated(0.43) probably_damaging(0.936) TCGA-BT-A20W-01 17 55027860 55027860 G A COIL Missense_Mutation p.S248L 0.06 deleterious(0.02) benign(0.237) TCGA-BT-A20W-01 17 7226379 7226379 C A NEURL4 Silent p.A827A 0.15 TCGA-BT-A20W-01 18 252549 252549 G C THOC1 Missense_Mutation p.P223A 0.10 tolerated(0.17) benign(0.194) TCGA-BT-A20W-01 18 39584404 39584404 C T PIK3C3 Missense_Mutation p.P357S 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-BT-A20W-01 19 21933944 21933944 G A ZNF100 Intron 0.20 TCGA-BT-A20W-01 19 22941848 22941848 T G ZNF99 Missense_Mutation p.E288A 0.09 tolerated(0.07) probably_damaging(0.937) TCGA-BT-A20W-01 19 39086328 39086328 C A MAP4K1 Nonsense_Mutation p.G741* 0.17 TCGA-BT-A20W-01 19 39516069 39516069 C G FBXO27 Silent p.V278V 0.05 TCGA-BT-A20W-01 19 39866391 39866391 G C SAMD4B Missense_Mutation p.G257R 0.17 tolerated(0.79) benign(0.005) TCGA-BT-A20W-01 19 56467116 56467116 C T NLRP8 Silent p.N564N 0.05 TCGA-BT-A20W-01 19 9085813 9085813 G C MUC16 Nonsense_Mutation p.S2001* 0.11 TCGA-BT-A20W-01 1 115258745 115258745 C G NRAS Missense_Mutation p.G13R 0.08 deleterious(0) possibly_damaging(0.534) TCGA-BT-A20W-01 1 12819342 12819342 C T C1orf158 Missense_Mutation p.P109S 0.08 tolerated(0.11) probably_damaging(1) TCGA-BT-A20W-01 1 155294949 155294949 G A RUSC1 Missense_Mutation p.A505T 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-BT-A20W-01 1 158613184 158613184 G C SPTA1 Missense_Mutation p.A1457G 0.05 deleterious(0.03) possibly_damaging(0.72) TCGA-BT-A20W-01 1 220195731 220195731 C T EPRS Missense_Mutation p.R358H 0.05 deleterious(0) probably_damaging(0.994) TCGA-BT-A20W-01 1 29651735 29651735 C T PTPRU Missense_Mutation p.A1392V 0.10 deleterious(0.04) probably_damaging(0.988) TCGA-BT-A20W-01 1 67666418 67666418 A C IL23R Splice_Site p.X164_splice 0.06 TCGA-BT-A20W-01 21 10998299 10998299 G C TPTE RNA 0.06 TCGA-BT-A20W-01 21 30699117 30699117 T G BACH1 Silent p.S324S 0.03 TCGA-BT-A20W-01 22 31816285 31816285 G A DRG1 Silent p.L152L 0.07 TCGA-BT-A20W-01 2 173825863 173825863 A G RAPGEF4 Missense_Mutation p.K202R 0.09 tolerated(0.9) benign(0.01) TCGA-BT-A20W-01 2 179343067 179343067 C T FKBP7 Missense_Mutation p.D54N 0.10 deleterious(0) probably_damaging(0.999) TCGA-BT-A20W-01 2 179462331 179462331 C T TTN Missense_Mutation p.V19160I 0.07 TCGA-BT-A20W-01 2 182387015 182387015 A G ITGA4 Missense_Mutation p.T674A 0.04 tolerated(0.95) benign(0.004) TCGA-BT-A20W-01 2 220147644 220147644 G A DNAJB2 Silent p.G146G 0.08 TCGA-BT-A20W-01 2 231978470 231978470 T G HTR2B Missense_Mutation p.I176L 0.06 deleterious(0.05) probably_damaging(0.966) TCGA-BT-A20W-01 2 235405159 235405159 G A ARL4C Silent p.A24A 0.08 TCGA-BT-A20W-01 2 50724504 50724504 C G NRXN1 Missense_Mutation p.G989A 0.07 deleterious(0.02) possibly_damaging(0.877) TCGA-BT-A20W-01 2 98504542 98504542 T C TMEM131 Missense_Mutation p.E111G 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-BT-A20W-01 3 100948226 100948226 C G IMPG2 Missense_Mutation p.E1211Q 0.16 deleterious(0) probably_damaging(0.973) TCGA-BT-A20W-01 3 121341105 121341105 G A FBXO40 Missense_Mutation p.D277N 0.12 tolerated(0.25) benign(0.003) TCGA-BT-A20W-01 3 140397214 140397214 G A TRIM42 Missense_Mutation p.R48Q 0.06 tolerated(0.14) benign(0.004) TCGA-BT-A20W-01 3 160146645 160146645 G C SMC4 Missense_Mutation p.D904H 0.06 deleterious(0.01) possibly_damaging(0.717) TCGA-BT-A20W-01 3 20225210 20225210 C G SGOL1 Missense_Mutation p.E77Q 0.11 deleterious(0.01) possibly_damaging(0.787) TCGA-BT-A20W-01 3 38945514 38945514 G T SCN11A Missense_Mutation p.Q562K 0.05 tolerated(0.3) benign(0.001) TCGA-BT-A20W-01 3 42680096 42680096 C T NKTR Missense_Mutation p.S967L 0.06 tolerated_low_confidence(0.3) benign(0.422) TCGA-BT-A20W-01 3 78685192 78685192 G C ROBO1 Nonsense_Mutation p.S1035* 0.09 TCGA-BT-A20W-01 4 123160717 123160717 C G KIAA1109 Missense_Mutation p.Q1294E 0.35 benign(0.057) TCGA-BT-A20W-01 4 71200994 71200994 G C CABS1 Missense_Mutation p.D80H 0.06 deleterious(0) possibly_damaging(0.476) TCGA-BT-A20W-01 4 90872768 90872768 G T MMRN1 Missense_Mutation p.S1044I 0.08 deleterious(0.03) benign(0.049) TCGA-BT-A20W-01 5 129520760 129520760 A G CHSY3 Missense_Mutation p.E642G 0.07 deleterious(0) probably_damaging(0.999) TCGA-BT-A20W-01 5 13753535 13753535 T A DNAH5 Missense_Mutation p.N3560I 0.04 possibly_damaging(0.703) TCGA-BT-A20W-01 5 137780945 137780945 G A REEP2 Missense_Mutation p.R147H 0.08 deleterious(0) possibly_damaging(0.611) TCGA-BT-A20W-01 5 13823473 13823473 C T DNAH5 Missense_Mutation p.E2196K 0.06 benign(0.292) TCGA-BT-A20W-01 5 180057288 180057288 C T FLT4 Silent p.R150R 0.31 TCGA-BT-A20W-01 5 9122934 9122934 C T SEMA5A Missense_Mutation p.V539M 0.52 tolerated(0.05) possibly_damaging(0.893) TCGA-BT-A20W-01 6 100966000 100966000 C T ASCC3 Missense_Mutation p.A1932T 0.08 deleterious(0) possibly_damaging(0.904) TCGA-BT-A20W-01 6 108193031 108193031 C T SEC63 Silent p.K720K 0.08 TCGA-BT-A20W-01 6 150713566 150713566 C G IYD Missense_Mutation p.I152M 0.11 deleterious(0) probably_damaging(0.997) TCGA-BT-A20W-01 6 163984654 163984654 C T QKI Silent p.P279P 0.17 TCGA-BT-A20W-01 7 129908841 129908841 A G CPA2 Silent p.E48E 0.06 TCGA-BT-A20W-01 7 23016375 23016375 C A FAM126A Missense_Mutation p.G156V 0.07 tolerated(0.16) probably_damaging(0.965) TCGA-BT-A20W-01 7 91726612 91726613 - A AKAP9 Frame_Shift_Ins p.L3448Tfs*10 0.29 TCGA-BT-A20W-01 8 100844794 100844794 C G VPS13B Missense_Mutation p.S3201R 0.05 deleterious(0) benign(0.307) TCGA-BT-A20W-01 8 133584686 133584686 G T LRRC6 Missense_Mutation p.H423Q 0.04 tolerated(0.27) benign(0.007) TCGA-BT-A20W-01 8 135615035 135615035 G T ZFAT Silent p.A309A 0.09 TCGA-BT-A20W-01 8 28304779 28304779 C G FBXO16 Missense_Mutation p.R251T 0.26 tolerated(0.31) benign(0.062) TCGA-BT-A20W-01 8 30210428 30210428 C A TUBBP1 RNA 0.08 TCGA-BT-A20W-01 8 67357557 67357557 C T ADHFE1 Missense_Mutation p.A153V 0.06 tolerated(0.08) benign(0.217) TCGA-BT-A20W-01 8 8185379 8185379 G A SGK223 Silent p.L971L 0.16 TCGA-BT-A20W-01 9 100692795 100692795 T G HEMGN Silent p.T294T 0.03 TCGA-BT-A20W-01 9 104314697 104314697 G A RNF20 Silent p.Q521Q 0.04 TCGA-BT-A20W-01 9 114176711 114176711 C T KIAA0368 Missense_Mutation p.G840E 0.10 deleterious(0.05) probably_damaging(0.917) TCGA-BT-A20W-01 9 135276961 135276961 G A TTF1 Silent p.S416S 0.05 TCGA-BT-A20W-01 9 137619185 137619185 A T COL5A1 Missense_Mutation p.D243V 0.09 probably_damaging(0.998) TCGA-BT-A20W-01 9 139837920 139837920 C A FBXW5 Missense_Mutation p.D78Y 0.39 tolerated(1) probably_damaging(0.99) TCGA-BT-A20W-01 X 115573895 115573895 A G SLC6A14 Silent p.T129T 0.13 TCGA-BT-A20W-01 X 123556134 123556134 C G TENM1 Missense_Mutation p.D1487H 0.14 deleterious(0) possibly_damaging(0.85) TCGA-BT-A20W-01 X 125685222 125685222 T G DCAF12L1 Missense_Mutation p.N457T 0.06 deleterious(0) possibly_damaging(0.721) TCGA-BT-A20X-01 10 102265906 102265906 C A SEC31B Missense_Mutation p.C312F 0.05 deleterious(0) probably_damaging(0.989) TCGA-BT-A20X-01 10 43695680 43695680 C G RASGEF1A Missense_Mutation p.E236Q 0.23 deleterious(0.02) benign(0.229) TCGA-BT-A20X-01 10 44873249 44873249 A G CXCL12 Missense_Mutation p.I124T 0.33 tolerated_low_confidence(0.33) possibly_damaging(0.711) TCGA-BT-A20X-01 10 82033565 82033565 C G MAT1A Missense_Mutation p.W387S 0.28 deleterious(0) probably_damaging(0.999) TCGA-BT-A20X-01 10 96484121 96484121 T C CYP2C18 Missense_Mutation p.I327T 0.14 deleterious(0) probably_damaging(1) TCGA-BT-A20X-01 11 103908743 103908743 G T DDI1 3'UTR 0.25 TCGA-BT-A20X-01 11 111844896 111844896 G T DIXDC1 Missense_Mutation p.A156S 0.29 deleterious(0.01) possibly_damaging(0.833) TCGA-BT-A20X-01 11 130005576 130005576 C T APLP2 Silent p.P601P 0.29 TCGA-BT-A20X-01 11 55861545 55861545 G A OR8I2 Silent p.L254L 0.15 TCGA-BT-A20X-01 11 65266270 65266270 G T MALAT1 RNA 0.14 TCGA-BT-A20X-01 11 65266271 65266271 T A MALAT1 RNA 0.13 TCGA-BT-A20X-01 11 82921405 82921405 C T ANKRD42 Missense_Mutation p.L104F 0.22 deleterious(0.03) probably_damaging(1) TCGA-BT-A20X-01 12 121001343 121001343 G T RNF10 Missense_Mutation p.C483F 0.29 tolerated(0.28) benign(0.01) TCGA-BT-A20X-01 12 49433217 49433217 C A KMT2D Splice_Site p.X2743_splice 0.23 TCGA-BT-A20X-01 12 49433218 49433218 C A KMT2D Missense_Mutation p.Q2743H 0.23 probably_damaging(0.993) TCGA-BT-A20X-01 12 85517961 85517961 A G LRRIQ1 Missense_Mutation p.K1224R 0.27 tolerated(0.11) benign(0.022) TCGA-BT-A20X-01 13 32757159 32757159 A G FRY Silent p.E1014E 0.12 TCGA-BT-A20X-01 14 105861082 105861082 G A PACS2 3'UTR 0.21 TCGA-BT-A20X-01 14 73989224 73989224 G C HEATR4 Missense_Mutation p.N211K 0.22 deleterious(0.01) possibly_damaging(0.69) TCGA-BT-A20X-01 15 28501094 28501094 T A HERC2 Missense_Mutation p.D932V 0.15 probably_damaging(0.927) TCGA-BT-A20X-01 15 75949429 75949429 A G SNX33 Missense_Mutation p.H533R 0.46 deleterious(0) benign(0.326) TCGA-BT-A20X-01 16 2570887 2570887 C T AMDHD2 Silent p.F67F 0.27 TCGA-BT-A20X-01 16 65016108 65016108 C - CDH11 Frame_Shift_Del p.D366Tfs*3 0.25 TCGA-BT-A20X-01 16 67763673 67763673 A T RANBP10 Missense_Mutation p.S353T 0.10 tolerated(0.39) benign(0.053) TCGA-BT-A20X-01 17 26969332 26969332 T C KIAA0100 Silent p.L179L 0.36 TCGA-BT-A20X-01 17 37681014 37681014 T C CDK12 Silent p.P1061P 0.16 TCGA-BT-A20X-01 17 72916416 72916416 C G USH1G Missense_Mutation p.R172P 0.30 tolerated(0.27) benign(0.221) TCGA-BT-A20X-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.33 TCGA-BT-A20X-01 18 21364074 21364074 G T LAMA3 Missense_Mutation p.R519L 0.03 benign(0.223) TCGA-BT-A20X-01 18 25573552 25573552 T C CDH2 Missense_Mutation p.N357S 0.15 tolerated(0.06) benign(0.043) TCGA-BT-A20X-01 19 12358887 12358887 T G ZNF44 Silent p.V276V 0.22 TCGA-BT-A20X-01 19 41307012 41307012 C G EGLN2 Missense_Mutation p.L179V 0.16 tolerated(0.17) benign(0) TCGA-BT-A20X-01 19 41518596 41518596 C G CYP2B6 Silent p.L390L 0.32 TCGA-BT-A20X-01 19 8131048 8131048 C A FBN3 Missense_Mutation p.A2729S 0.14 tolerated(0.06) probably_damaging(0.925) TCGA-BT-A20X-01 19 9065495 9065495 G A MUC16 Silent p.I7317I 0.19 TCGA-BT-A20X-01 1 117552557 117552557 C A CD101 Nonsense_Mutation p.C43* 0.25 TCGA-BT-A20X-01 1 151337031 151337031 G T SELENBP1 Missense_Mutation p.D469E 0.12 deleterious(0.04) probably_damaging(0.975) TCGA-BT-A20X-01 1 158390585 158390585 C T OR10K2 Silent p.Q24Q 0.30 TCGA-BT-A20X-01 1 175097790 175097790 G A TNN Missense_Mutation p.A1080T 0.07 tolerated(0.14) benign(0.36) TCGA-BT-A20X-01 1 21177871 21177871 C A EIF4G3 Missense_Mutation p.D1168Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-BT-A20X-01 1 70478699 70478699 A G LRRC7 Missense_Mutation p.N355D 0.28 deleterious(0) probably_damaging(0.991) TCGA-BT-A20X-01 20 40042085 40042085 G A CHD6 Missense_Mutation p.S2337L 0.17 tolerated(0.07) benign(0.004) TCGA-BT-A20X-01 20 57828995 57828995 C T ZNF831 Missense_Mutation p.H1411Y 0.19 tolerated(0.15) benign(0.062) TCGA-BT-A20X-01 20 62421673 62421673 G A ZBTB46 Silent p.I146I 0.30 TCGA-BT-A20X-01 21 31655068 31655068 G C KRTAP24-1 Missense_Mutation p.C61W 0.32 deleterious(0) probably_damaging(0.963) TCGA-BT-A20X-01 22 18910367 18910367 G T PRODH Missense_Mutation p.A271D 0.08 tolerated(0.3) benign(0.003) TCGA-BT-A20X-01 22 24384187 24384187 G A GSTT1 Silent p.R15R 0.75 TCGA-BT-A20X-01 22 25124271 25124271 C A PIWIL3 Missense_Mutation p.C602F 0.08 tolerated(0.19) benign(0.026) TCGA-BT-A20X-01 22 41574469 41574469 G T EP300 Nonsense_Mutation p.E2252* 0.49 TCGA-BT-A20X-01 2 100210166 100210166 G A AFF3 Missense_Mutation p.R678W 0.16 deleterious(0) probably_damaging(0.999) TCGA-BT-A20X-01 2 182543033 182543033 C T NEUROD1 Silent p.A185A 0.24 TCGA-BT-A20X-01 2 213872047 213872047 C G IKZF2 3'UTR 0.18 TCGA-BT-A20X-01 2 213872176 213872176 C T IKZF2 Missense_Mutation p.D497N 0.14 deleterious(0.04) benign(0.022) TCGA-BT-A20X-01 2 213872245 213872245 C G IKZF2 Missense_Mutation p.E474Q 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-BT-A20X-01 2 213872378 213872378 C G IKZF2 Missense_Mutation p.K429N 0.16 tolerated(0.21) possibly_damaging(0.717) TCGA-BT-A20X-01 2 213872657 213872657 C G IKZF2 Silent p.L336L 0.12 TCGA-BT-A20X-01 3 122186193 122186193 C G KPNA1 Missense_Mutation p.Q71H 0.28 tolerated(0.15) benign(0.005) TCGA-BT-A20X-01 3 136152474 136152474 A C STAG1 Missense_Mutation p.L525R 0.31 deleterious(0) probably_damaging(0.993) TCGA-BT-A20X-01 4 13602068 13602068 G A BOD1L1 Silent p.F2152F 0.15 TCGA-BT-A20X-01 4 156837048 156837048 A C TDO2 Missense_Mutation p.M294L 0.12 tolerated(0.18) possibly_damaging(0.734) TCGA-BT-A20X-01 5 140720582 140720582 G A PCDHGA2 Missense_Mutation p.A682T 0.33 tolerated_low_confidence(0.32) benign(0.006) TCGA-BT-A20X-01 5 180219548 180219548 C A MGAT1 Missense_Mutation p.D142Y 0.37 probably_damaging(0.998) TCGA-BT-A20X-01 5 180219549 180219549 C A MGAT1 Missense_Mutation p.Q141H 0.37 possibly_damaging(0.668) TCGA-BT-A20X-01 5 32048767 32048767 C T PDZD2 Silent p.L548L 0.13 TCGA-BT-A20X-01 5 40936538 40936538 T G C7 Missense_Mutation p.S127A 0.15 tolerated(0.42) benign(0.003) TCGA-BT-A20X-01 5 72469403 72469403 G A TMEM174 Silent p.S111S 0.35 TCGA-BT-A20X-01 5 96339207 96339207 A G LNPEP Missense_Mutation p.Y581C 0.14 deleterious(0) possibly_damaging(0.873) TCGA-BT-A20X-01 6 130762473 130762473 G T TMEM200A Missense_Mutation p.E302D 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-BT-A20X-01 6 159682221 159682221 G C FNDC1 Splice_Site p.X1725_splice 0.24 TCGA-BT-A20X-01 6 170068173 170068173 C T WDR27 Missense_Mutation p.E189K 0.06 tolerated(0.21) benign(0.094) TCGA-BT-A20X-01 6 28540209 28540209 C A SCAND3 Missense_Mutation p.D1153Y 0.13 tolerated_low_confidence(0.19) probably_damaging(0.99) TCGA-BT-A20X-01 6 30865139 30865139 T A DDR1 Missense_Mutation p.F667I 0.12 tolerated_low_confidence(0.43) benign(0.002) TCGA-BT-A20X-01 6 51923138 51923138 T G PKHD1 Silent p.R499R 0.14 TCGA-BT-A20X-01 7 150417951 150417951 C G GIMAP1 Missense_Mutation p.L287V 0.40 tolerated(0.15) probably_damaging(0.981) TCGA-BT-A20X-01 7 151932973 151932973 C A KMT2C Nonsense_Mutation p.G900* 0.14 TCGA-BT-A20X-01 7 27195993 27195993 T A HOXA7 Missense_Mutation p.N58Y 0.28 tolerated(0.07) possibly_damaging(0.556) TCGA-BT-A20X-01 7 2978386 2978386 T C CARD11 Missense_Mutation p.D315G 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A20X-01 7 33028146 33028146 G A FKBP9 Silent p.T307T 0.31 TCGA-BT-A20X-01 7 48375056 48375056 C G ABCA13 Missense_Mutation p.T3346S 0.15 benign(0.01) TCGA-BT-A20X-01 7 66463885 66463885 G A TYW1 Missense_Mutation p.D73N 0.16 tolerated_low_confidence(0.2) benign(0.002) TCGA-BT-A20X-01 7 94992134 94992134 C A PON3 Missense_Mutation p.V239L 0.17 tolerated(0.63) possibly_damaging(0.447) TCGA-BT-A20X-01 8 113237073 113237073 G T CSMD3 Missense_Mutation p.T3684N 0.16 tolerated(0.11) possibly_damaging(0.722) TCGA-BT-A20X-01 8 121500533 121500533 C A MTBP Missense_Mutation p.H434N 0.15 tolerated(0.58) benign(0.015) TCGA-BT-A20X-01 9 111617354 111617354 C A ACTL7B Missense_Mutation p.G286V 0.14 deleterious(0) probably_damaging(1) TCGA-BT-A20X-01 9 123526772 123526772 A G FBXW2 3'UTR 0.28 TCGA-BT-A20X-01 9 125746950 125746950 G T RABGAP1 Missense_Mutation p.G113W 0.12 deleterious(0.02) benign(0.319) TCGA-BT-A20X-01 9 135601202 135601202 C T AK8 Missense_Mutation p.R438K 0.38 tolerated(0.25) possibly_damaging(0.676) TCGA-BT-A20X-01 9 17395000 17395000 A G CNTLN Missense_Mutation p.I850V 0.23 tolerated(0.11) benign(0.034) TCGA-BT-A20X-01 9 35650771 35650771 C A SIT1 Missense_Mutation p.C27F 0.29 deleterious_low_confidence(0.01) benign(0.115) TCGA-BT-A20X-01 9 88952370 88952370 C T ZCCHC6 Silent p.R473R 0.32 TCGA-BT-A20X-01 9 88958024 88958024 G T ZCCHC6 Nonsense_Mutation p.S351* 0.30 TCGA-BT-A20X-01 X 10106828 10106828 G T WWC3 Missense_Mutation p.R979L 0.36 deleterious(0.05) probably_damaging(0.951) TCGA-BT-A20X-01 X 99934317 99934317 C G SYTL4 Missense_Mutation p.V551L 0.36 deleterious(0) probably_damaging(0.963) TCGA-BT-A2LA-01 10 102003498 102003498 C A CWF19L1 Missense_Mutation p.S334I 0.32 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LA-01 10 116049058 116049058 C T VWA2 Silent p.G644G 0.40 TCGA-BT-A2LA-01 10 50820028 50820028 C T SLC18A3 Silent p.V414V 0.96 TCGA-BT-A2LA-01 10 53458820 53458820 G C CSTF2T Missense_Mutation p.Q164E 0.98 deleterious(0.03) possibly_damaging(0.894) TCGA-BT-A2LA-01 10 96099552 96099552 G A NOC3L Missense_Mutation p.H636Y 1.00 deleterious(0.01) possibly_damaging(0.529) TCGA-BT-A2LA-01 10 98388228 98388228 A T PIK3AP1 Missense_Mutation p.S466R 0.26 tolerated(0.52) benign(0.008) TCGA-BT-A2LA-01 10 99340615 99340615 C T ANKRD2 Missense_Mutation p.R181C 0.21 deleterious(0.02) probably_damaging(0.93) TCGA-BT-A2LA-01 11 105836759 105836759 G A GRIA4 Intron 1.00 TCGA-BT-A2LA-01 11 107974953 107974953 A G CUL5 Missense_Mutation p.I729V 0.17 tolerated(0.1) benign(0.366) TCGA-BT-A2LA-01 11 111896365 111896365 G A DLAT Missense_Mutation p.A57T 0.13 tolerated(0.11) benign(0.05) TCGA-BT-A2LA-01 11 118242356 118242356 C G UBE4A Missense_Mutation p.S179C 0.48 deleterious(0.03) benign(0.016) TCGA-BT-A2LA-01 11 124413492 124413492 G A OR8B12 Missense_Mutation p.P20L 0.96 deleterious_low_confidence(0.03) benign(0.021) TCGA-BT-A2LA-01 11 1955812 1955812 G A TNNT3 Missense_Mutation p.E173K 0.45 deleterious(0) possibly_damaging(0.702) TCGA-BT-A2LA-01 11 20065735 20065735 G A NAV2 Missense_Mutation p.R1062Q 0.48 deleterious(0) probably_damaging(0.992) TCGA-BT-A2LA-01 11 32954327 32954327 C T QSER1 Missense_Mutation p.S379F 0.44 deleterious(0.01) benign(0.372) TCGA-BT-A2LA-01 11 3429979 3429979 G C TSSC2 RNA 0.55 TCGA-BT-A2LA-01 11 49597925 49597925 T G RP11-707M1.1 RNA 0.24 TCGA-BT-A2LA-01 11 56020700 56020700 G T OR5T3 3'Flank 0.50 TCGA-BT-A2LA-01 11 57087813 57087813 G A TNKS1BP1 Silent p.F156F 0.48 TCGA-BT-A2LA-01 11 62378353 62378353 C G EML3 Missense_Mutation p.E188D 0.97 tolerated(0.37) benign(0.101) TCGA-BT-A2LA-01 11 63273899 63273899 C T LGALS12 Missense_Mutation p.T12M 0.22 deleterious_low_confidence(0.03) benign(0.151) TCGA-BT-A2LA-01 11 64972327 64972327 G C CAPN1 Missense_Mutation p.E447Q 0.62 tolerated(0.3) benign(0.144) TCGA-BT-A2LA-01 11 6629326 6629326 C G ILK Missense_Mutation p.S47C 0.43 tolerated(0.18) possibly_damaging(0.563) TCGA-BT-A2LA-01 11 76804826 76804826 G A CAPN5 Silent p.S88S 0.14 TCGA-BT-A2LA-01 12 110207073 110207073 C T FAM222A Missense_Mutation p.R447C 0.42 deleterious(0) probably_damaging(0.995) TCGA-BT-A2LA-01 12 112694185 112694185 C A HECTD4 Missense_Mutation p.G943V 0.26 benign(0.052) TCGA-BT-A2LA-01 12 121435299 121435299 G C HNF1A Missense_Mutation p.Q444H 1.00 deleterious(0) probably_damaging(0.975) TCGA-BT-A2LA-01 12 4543531 4543531 G A FGF6 Silent p.F159F 0.54 TCGA-BT-A2LA-01 12 49445278 49445278 C A KMT2D Nonsense_Mutation p.E730* 0.98 TCGA-BT-A2LA-01 12 53517573 53517573 G A SOAT2 Nonsense_Mutation p.W478* 0.94 TCGA-BT-A2LA-01 12 54577334 54577334 C G SMUG1 Intron 0.25 TCGA-BT-A2LA-01 12 56221147 56221147 C G DNAJC14 Missense_Mutation p.L432F 0.29 deleterious(0) probably_damaging(0.949) TCGA-BT-A2LA-01 13 24243051 24243051 G A TNFRSF19 Missense_Mutation p.D354N 0.94 tolerated_low_confidence(0.05) benign(0.015) TCGA-BT-A2LA-01 13 25378490 25378490 A G RNF17 Missense_Mutation p.I672V 0.10 tolerated(1) benign(0.001) TCGA-BT-A2LA-01 13 31722222 31722222 C T HSPH1 Missense_Mutation p.E418K 0.04 deleterious(0.02) benign(0.036) TCGA-BT-A2LA-01 13 49050864 49050864 C T RB1 Nonsense_Mutation p.Q850* 0.91 TCGA-BT-A2LA-01 13 61986799 61986799 G A PCDH20 Missense_Mutation p.S478L 0.95 tolerated(0.17) benign(0.007) TCGA-BT-A2LA-01 13 79894806 79894806 C G RBM26 Missense_Mutation p.D965H 0.67 deleterious(0) unknown(0) TCGA-BT-A2LA-01 13 94482415 94482415 C T GPC6 Nonsense_Mutation p.R110* 0.09 TCGA-BT-A2LA-01 14 105715636 105715636 C T BRF1 Intron 0.25 TCGA-BT-A2LA-01 14 105932829 105932829 C T MTA1 Missense_Mutation p.T564M 0.44 deleterious(0.05) benign(0.366) TCGA-BT-A2LA-01 14 23894579 23894579 C G MYH7 Missense_Mutation p.E779Q 0.28 deleterious(0.04) probably_damaging(0.949) TCGA-BT-A2LA-01 14 24459505 24459505 G A DHRS4L2 Silent p.L81L 0.33 TCGA-BT-A2LA-01 14 31574810 31574810 T A HECTD1 Missense_Mutation p.S2431C 0.55 deleterious(0.01) possibly_damaging(0.552) TCGA-BT-A2LA-01 14 50087957 50087957 C T MGAT2 5'UTR 0.62 TCGA-BT-A2LA-01 14 55241653 55241653 C T SAMD4A Nonsense_Mutation p.R573* 0.18 TCGA-BT-A2LA-01 14 62462850 62462850 C T SYT16 Missense_Mutation p.S38L 0.37 tolerated_low_confidence(0.08) benign(0.012) TCGA-BT-A2LA-01 14 64935662 64935662 G A AKAP5 Missense_Mutation p.E184K 0.68 tolerated(0.21) benign(0.005) TCGA-BT-A2LA-01 14 69726999 69726999 C G GALNT16 5'UTR 0.65 TCGA-BT-A2LA-01 14 71555955 71555955 G A PCNX Missense_Mutation p.D1829N 0.52 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 14 74205300 74205301 - G ELMSAN1 Frame_Shift_Ins p.Q471Pfs*19 0.13 TCGA-BT-A2LA-01 15 43020879 43020879 G A CDAN1 Silent p.H925H 0.38 TCGA-BT-A2LA-01 16 24788347 24788347 A G TNRC6A Missense_Mutation p.K86R 0.32 deleterious(0.01) possibly_damaging(0.899) TCGA-BT-A2LA-01 16 28498819 28498819 C T CLN3 Missense_Mutation p.V140I 0.13 tolerated(0.43) benign(0.006) TCGA-BT-A2LA-01 16 30785258 30785258 G A RNF40 Splice_Site p.X944_splice 0.14 TCGA-BT-A2LA-01 16 31927817 31927817 G C ZNF267 3'UTR 0.38 TCGA-BT-A2LA-01 16 53495737 53495737 C T RBL2 Silent p.D477D 0.11 TCGA-BT-A2LA-01 16 66621969 66621969 G A CMTM2 Missense_Mutation p.A232T 0.26 tolerated_low_confidence(0.06) unknown(0) TCGA-BT-A2LA-01 16 67199490 67199490 C G HSF4 Missense_Mutation p.F63L 0.41 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 16 67942808 67942808 C T PSKH1 Silent p.F52F 0.44 TCGA-BT-A2LA-01 16 76587326 76587326 G A RP11-58C22.1 Missense_Mutation p.V5M 0.40 deleterious(0.05) benign(0.14) TCGA-BT-A2LA-01 16 88017671 88017671 C T BANP Intron 0.36 TCGA-BT-A2LA-01 16 89258803 89258803 C T CDH15 Silent p.L602L 0.88 TCGA-BT-A2LA-01 16 90015978 90015978 C T DEF8 Silent p.L35L 0.50 TCGA-BT-A2LA-01 17 10302861 10302861 C A MYH8 Silent p.A1287A 0.41 TCGA-BT-A2LA-01 17 17896125 17896125 C G LRRC48 Missense_Mutation p.S164C 0.77 tolerated(0.05) possibly_damaging(0.687) TCGA-BT-A2LA-01 17 20000026 20000026 G A SPECC1 Missense_Mutation p.R21Q 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A2LA-01 17 27049662 27049662 C T RPL23A Intron 0.64 TCGA-BT-A2LA-01 17 27050445 27050445 C T RPL23A Intron 0.71 TCGA-BT-A2LA-01 17 27908838 27908838 C T GIT1 Missense_Mutation p.E214K 0.59 deleterious(0.05) benign(0.393) TCGA-BT-A2LA-01 17 39684119 39684120 - T KRT19 Nonsense_Mutation p.Y127* 0.31 TCGA-BT-A2LA-01 17 42284684 42284684 C T UBTF Missense_Mutation p.E741K 0.87 unknown(0) TCGA-BT-A2LA-01 17 42463414 42463414 C T ITGA2B Missense_Mutation p.E92K 0.96 tolerated(0.72) benign(0) TCGA-BT-A2LA-01 17 4455208 4455208 G T MYBBP1A Silent p.I330I 0.98 TCGA-BT-A2LA-01 17 45219253 45219253 C T CDC27 Missense_Mutation p.G512E 0.06 deleterious(0) probably_damaging(0.965) TCGA-BT-A2LA-01 17 62552001 62552001 G A SMURF2 Missense_Mutation p.S516L 0.46 deleterious(0.01) benign(0.066) TCGA-BT-A2LA-01 17 70643734 70643734 C A SLC39A11 Missense_Mutation p.G340C 0.13 deleterious(0) probably_damaging(0.998) TCGA-BT-A2LA-01 17 74270287 74270287 G A QRICH2 3'UTR 0.15 TCGA-BT-A2LA-01 17 74464986 74464986 G A AANAT Missense_Mutation p.R98H 0.13 deleterious(0.02) probably_damaging(0.956) TCGA-BT-A2LA-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.96 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 17 77708847 77708847 G C ENPP7 Silent p.L135L 0.45 TCGA-BT-A2LA-01 17 77709073 77709073 G A ENPP7 Missense_Mutation p.E211K 0.40 tolerated(0.07) possibly_damaging(0.868) TCGA-BT-A2LA-01 17 77709075 77709075 G A ENPP7 Silent p.E211E 0.45 TCGA-BT-A2LA-01 18 10526138 10526138 C T NAPG Silent p.L13L 0.33 TCGA-BT-A2LA-01 18 12479826 12479826 T C SPIRE1 Missense_Mutation p.M426V 0.60 tolerated(0.77) benign(0.001) TCGA-BT-A2LA-01 18 25582991 25582991 G A CDH2 Silent p.I330I 0.33 TCGA-BT-A2LA-01 18 67872514 67872514 C G RTTN Missense_Mutation p.K23N 0.59 deleterious(0) possibly_damaging(0.475) TCGA-BT-A2LA-01 18 72234525 72234525 G A CNDP1 Missense_Mutation p.A205T 0.55 deleterious(0) benign(0.117) TCGA-BT-A2LA-01 19 11489177 11489177 C T EPOR Missense_Mutation p.R337H 0.23 tolerated(0.2) benign(0.004) TCGA-BT-A2LA-01 19 14829066 14829066 C G ZNF333 Silent p.L309L 0.49 TCGA-BT-A2LA-01 19 14830020 14830020 C T ZNF333 Silent p.F627F 0.49 TCGA-BT-A2LA-01 19 17104256 17104256 G T CPAMD8 Silent p.I459I 0.51 TCGA-BT-A2LA-01 19 18254596 18254596 G A MAST3 Missense_Mutation p.G759E 0.46 tolerated(0.32) benign(0.088) TCGA-BT-A2LA-01 19 18254700 18254700 G C MAST3 Missense_Mutation p.E794Q 0.40 deleterious(0.03) benign(0.279) TCGA-BT-A2LA-01 19 18271739 18271739 C T PIK3R2 Silent p.S142S 0.27 TCGA-BT-A2LA-01 19 19744825 19744825 G A GMIP Silent p.Y753Y 0.15 TCGA-BT-A2LA-01 19 2234231 2234231 C T PLEKHJ1 Missense_Mutation p.E80K 0.43 tolerated(0.13) possibly_damaging(0.61) TCGA-BT-A2LA-01 19 22939023 22939023 G T ZNF99 3'Flank 0.22 TCGA-BT-A2LA-01 19 2807489 2807489 G A THOP1 Silent p.V312V 0.42 TCGA-BT-A2LA-01 19 2808385 2808385 C T THOP1 Silent p.D466D 0.29 TCGA-BT-A2LA-01 19 30935447 30935447 C T ZNF536 Silent p.A326A 0.10 TCGA-BT-A2LA-01 19 33702185 33702185 G C SLC7A10 Missense_Mutation p.S321C 0.24 tolerated(0.07) probably_damaging(0.995) TCGA-BT-A2LA-01 19 36605737 36605737 C G POLR2I Missense_Mutation p.E8Q 0.31 tolerated(0.52) benign(0.091) TCGA-BT-A2LA-01 19 37203318 37203318 G C ZNF567 5'UTR 0.11 TCGA-BT-A2LA-01 19 39098539 39098539 T A MAP4K1 Silent p.S374S 0.16 TCGA-BT-A2LA-01 19 39907574 39907574 G A PLEKHG2 Silent p.S226S 0.10 TCGA-BT-A2LA-01 19 40382696 40382696 C T FCGBP Missense_Mutation p.R3397H 0.02 possibly_damaging(0.812) TCGA-BT-A2LA-01 19 40421170 40421170 C T FCGBP Silent p.V917V 0.17 TCGA-BT-A2LA-01 19 4170197 4170197 G A CREB3L3 Silent p.K294K 0.45 TCGA-BT-A2LA-01 19 46290007 46290007 C T DMWD Silent p.S249S 0.53 TCGA-BT-A2LA-01 19 50059586 50059586 G A NOSIP Silent p.I274I 0.82 TCGA-BT-A2LA-01 19 50455652 50455652 C T SIGLEC11 Splice_Site p.X551_splice 0.94 TCGA-BT-A2LA-01 19 51602194 51602194 G A CTU1 Silent p.C237C 0.95 TCGA-BT-A2LA-01 19 54666763 54666763 C T TMC4 Intron 0.96 TCGA-BT-A2LA-01 19 54667405 54667405 C G TMC4 Intron 0.97 TCGA-BT-A2LA-01 19 59073928 59073928 G A MZF1 Silent p.A572A 0.30 TCGA-BT-A2LA-01 1 1019573 1019573 C T C1orf159 Intron 0.20 TCGA-BT-A2LA-01 1 11008624 11008624 G A C1orf127 Missense_Mutation p.P523L 0.19 tolerated(0.4) benign(0.004) TCGA-BT-A2LA-01 1 11140842 11140842 C T EXOSC10 Missense_Mutation p.R522H 0.26 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 1 114380599 114380599 G C PTPN22 Missense_Mutation p.Q475E 0.46 deleterious(0.01) benign(0.011) TCGA-BT-A2LA-01 1 116260512 116260512 C T CASQ2 Missense_Mutation p.D263N 0.54 deleterious(0) probably_damaging(0.958) TCGA-BT-A2LA-01 1 149784877 149784877 G A HIST2H3D Silent p.I120I 0.48 TCGA-BT-A2LA-01 1 152284112 152284112 G A FLG Nonsense_Mutation p.Q1084* 0.22 TCGA-BT-A2LA-01 1 155300191 155300191 C T RUSC1 Intron 0.38 TCGA-BT-A2LA-01 1 155657886 155657886 G A YY1AP1 Missense_Mutation p.L124F 0.48 tolerated_low_confidence(0.07) benign(0.08) TCGA-BT-A2LA-01 1 157557351 157557351 C G FCRL4 Splice_Site p.X188_splice 0.50 TCGA-BT-A2LA-01 1 175375887 175375887 C A TNR 5'UTR 0.41 TCGA-BT-A2LA-01 1 182638878 182638878 G A RGS8 Intron 0.23 TCGA-BT-A2LA-01 1 205138471 205138471 G C DSTYK Missense_Mutation p.R382G 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A2LA-01 1 211486172 211486172 G C RCOR3 Missense_Mutation p.E396Q 0.47 tolerated(0.07) possibly_damaging(0.529) TCGA-BT-A2LA-01 1 227335170 227335170 C T CDC42BPA Missense_Mutation p.E262K 0.51 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 1 23694481 23694481 G A ZNF436 Silent p.L6L 0.30 TCGA-BT-A2LA-01 1 243388525 243388525 G A CEP170 Nonsense_Mutation p.R20* 0.32 TCGA-BT-A2LA-01 1 248028004 248028004 C T TRIM58 Intron 0.47 TCGA-BT-A2LA-01 1 248263100 248263100 G A OR2L13 Silent p.V141V 0.47 TCGA-BT-A2LA-01 1 2523049 2523049 G A MMEL1 Silent p.P729P 0.16 TCGA-BT-A2LA-01 1 2537032 2537032 G A MMEL1 Nonsense_Mutation p.R261* 0.17 TCGA-BT-A2LA-01 1 26137979 26137979 G T SEPN1 Missense_Mutation p.A349S 0.20 tolerated(0.29) benign(0.01) TCGA-BT-A2LA-01 1 26658089 26658089 G A AIM1L Missense_Mutation p.T528M 0.17 deleterious(0.01) possibly_damaging(0.463) TCGA-BT-A2LA-01 1 27679978 27679978 C T SYTL1 Silent p.T516T 0.15 TCGA-BT-A2LA-01 1 38003474 38003474 C G SNIP1 Missense_Mutation p.D356H 0.20 deleterious(0) probably_damaging(0.989) TCGA-BT-A2LA-01 1 45253242 45253242 G C BEST4 Missense_Mutation p.L46V 0.20 tolerated(0.05) possibly_damaging(0.669) TCGA-BT-A2LA-01 1 60499199 60499199 C G C1orf87 Silent p.L326L 0.54 TCGA-BT-A2LA-01 1 68564226 68564226 G C WLS 3'UTR 0.54 TCGA-BT-A2LA-01 1 74671393 74671393 C T FPGT Silent p.F554F 0.56 TCGA-BT-A2LA-01 1 89834165 89834165 G A GBP6 Missense_Mutation p.E19K 0.48 tolerated(0.43) benign(0.075) TCGA-BT-A2LA-01 20 31629775 31629775 G A BPIFB6 Splice_Site p.X381_splice 0.18 TCGA-BT-A2LA-01 20 40049523 40049523 C G CHD6 Missense_Mutation p.E1918Q 0.40 deleterious_low_confidence(0.02) benign(0.147) TCGA-BT-A2LA-01 20 43837014 43837014 A G SEMG1 Missense_Mutation p.H359R 0.53 tolerated(0.33) benign(0.004) TCGA-BT-A2LA-01 20 50418948 50418948 G T SALL4 5'UTR 0.21 TCGA-BT-A2LA-01 20 6057762 6057762 C T FERMT1 3'UTR 0.22 TCGA-BT-A2LA-01 20 6057939 6057939 C A FERMT1 Missense_Mutation p.D639Y 0.23 deleterious(0) probably_damaging(0.926) TCGA-BT-A2LA-01 20 6057946 6057946 C T FERMT1 Silent p.L636L 0.21 TCGA-BT-A2LA-01 20 62899364 62899364 G A PCMTD2 Splice_Site p.X236_splice 0.31 TCGA-BT-A2LA-01 21 34951851 34951851 C T DONSON Silent p.V456V 0.41 TCGA-BT-A2LA-01 21 46020528 46020528 G A KRTAP10-7 Missense_Mutation p.A3T 0.44 tolerated(0.1) benign(0.022) TCGA-BT-A2LA-01 21 47537332 47537332 G A COL6A2 Missense_Mutation p.G340R 0.48 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 21 47570313 47570313 G A FTCD Nonsense_Mutation p.R255* 0.06 TCGA-BT-A2LA-01 21 47693318 47693318 G A MCM3AP Missense_Mutation p.T727M 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 21 47693319 47693319 T A MCM3AP Missense_Mutation p.T727S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A2LA-01 22 28193789 28193789 C T MN1 Missense_Mutation p.G915S 0.33 benign(0.01) TCGA-BT-A2LA-01 22 29445779 29445779 C T ZNRF3 Missense_Mutation p.S537L 0.11 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LA-01 22 31884648 31884648 C T EIF4ENIF1 Silent p.K19K 0.30 TCGA-BT-A2LA-01 22 44004412 44004412 G A EFCAB6 Silent p.Y877Y 0.72 TCGA-BT-A2LA-01 22 44237733 44237733 G A SULT4A1 Silent p.D83D 0.35 TCGA-BT-A2LA-01 2 109380185 109380185 G A RANBP2 Missense_Mutation p.E1064K 0.29 deleterious(0) benign(0.003) TCGA-BT-A2LA-01 2 11905692 11905692 G A LPIN1 Missense_Mutation p.G58S 0.32 deleterious(0.01) probably_damaging(1) TCGA-BT-A2LA-01 2 120643405 120643405 C A PTPN4 Missense_Mutation p.L208I 0.20 tolerated(0.34) probably_damaging(0.999) TCGA-BT-A2LA-01 2 122159243 122159243 G A CLASP1 Silent p.F914F 0.49 TCGA-BT-A2LA-01 2 138724673 138724673 G A HNMT Intron 0.88 TCGA-BT-A2LA-01 2 152528918 152528918 C G NEB Missense_Mutation p.E1422Q 0.53 benign(0.114) TCGA-BT-A2LA-01 2 160672032 160672032 G T LY75-CD302 Missense_Mutation p.P1478Q 0.65 tolerated(0.08) probably_damaging(0.994) TCGA-BT-A2LA-01 2 170042308 170042308 G A LRP2 Nonsense_Mutation p.R3184* 0.47 TCGA-BT-A2LA-01 2 202154564 202154564 C T ALS2CR12 Missense_Mutation p.R319K 1.00 tolerated_low_confidence(1) benign(0.002) TCGA-BT-A2LA-01 2 211454843 211454843 T C CPS1 Missense_Mutation p.V248A 0.49 deleterious(0) possibly_damaging(0.803) TCGA-BT-A2LA-01 2 242509574 242509574 G A BOK Silent p.A128A 0.33 TCGA-BT-A2LA-01 2 33468804 33468804 C T LTBP1 Missense_Mutation p.T651I 0.16 tolerated(0.16) benign(0.062) TCGA-BT-A2LA-01 2 38978510 38978510 G C SRSF7 5'UTR 0.64 TCGA-BT-A2LA-01 2 43451873 43451873 G A ZFP36L2 Missense_Mutation p.S357L 0.27 deleterious(0.04) unknown(0) TCGA-BT-A2LA-01 2 46207514 46207514 C T PRKCE Silent p.P229P 0.17 TCGA-BT-A2LA-01 2 61622326 61622326 C A USP34 Missense_Mutation p.D199Y 0.17 deleterious(0) probably_damaging(0.936) TCGA-BT-A2LA-01 2 7160784 7160784 C G RNF144A Missense_Mutation p.P161R 0.30 tolerated(0.35) benign(0.002) TCGA-BT-A2LA-01 2 71766312 71766312 G A DYSF Missense_Mutation p.V507M 0.41 deleterious(0) possibly_damaging(0.903) TCGA-BT-A2LA-01 3 108818264 108818264 C T MORC1 Missense_Mutation p.E122K 0.40 tolerated(0.06) probably_damaging(0.993) TCGA-BT-A2LA-01 3 113120125 113120125 C T WDR52 Missense_Mutation p.G446R 0.43 deleterious(0) probably_damaging(0.961) TCGA-BT-A2LA-01 3 113798753 113798753 G T QTRTD1 Missense_Mutation p.R261S 0.46 deleterious(0) probably_damaging(0.998) TCGA-BT-A2LA-01 3 129275467 129275467 C T PLXND1 Missense_Mutation p.R1885Q 0.33 tolerated(0.22) probably_damaging(0.995) TCGA-BT-A2LA-01 3 130282250 130282250 C A COL6A6 Missense_Mutation p.L135I 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A2LA-01 3 130282312 130282312 G A COL6A6 Silent p.R155R 0.51 TCGA-BT-A2LA-01 3 153958345 153958345 G A ARHGEF26 Silent p.E759E 0.48 TCGA-BT-A2LA-01 3 153958356 153958356 G A ARHGEF26 Missense_Mutation p.G763E 0.41 deleterious(0.01) benign(0.156) TCGA-BT-A2LA-01 3 169998127 169998128 - A PRKCI Frame_Shift_Ins p.T276Nfs*16 0.24 TCGA-BT-A2LA-01 3 179280806 179280806 C T ACTL6A 5'UTR 0.47 TCGA-BT-A2LA-01 3 183906015 183906015 T C ABCF3 Missense_Mutation p.L219S 0.18 deleterious(0) probably_damaging(0.998) TCGA-BT-A2LA-01 3 183908995 183908995 C T ABCF3 Silent p.I507I 0.57 TCGA-BT-A2LA-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.54 deleterious_low_confidence(0.02) benign(0.001) TCGA-BT-A2LA-01 3 195599249 195599249 G A TNK2 Missense_Mutation p.S513L 0.17 deleterious(0) possibly_damaging(0.8) TCGA-BT-A2LA-01 3 196731122 196731122 G C MFI2 Intron 0.81 TCGA-BT-A2LA-01 3 432717 432717 A G CHL1 Missense_Mutation p.Q889R 0.54 tolerated(0.21) possibly_damaging(0.478) TCGA-BT-A2LA-01 3 49933525 49933525 C T MST1R Missense_Mutation p.A889T 0.20 tolerated(0.29) benign(0.133) TCGA-BT-A2LA-01 3 52429588 52429588 G A DNAH1 Missense_Mutation p.R3718H 0.37 benign(0.009) TCGA-BT-A2LA-01 3 52597412 52597412 C T PBRM1 Missense_Mutation p.D1300N 0.43 tolerated(0.06) possibly_damaging(0.728) TCGA-BT-A2LA-01 3 66023833 66023833 C T MAGI1 Missense_Mutation p.E51K 0.31 tolerated(0.89) benign(0.11) TCGA-BT-A2LA-01 4 146435868 146435868 G A SMAD1 Missense_Mutation p.D35N 0.73 deleterious(0.02) possibly_damaging(0.68) TCGA-BT-A2LA-01 4 169911467 169911467 G A CBR4 Missense_Mutation p.T183I 0.46 deleterious(0) probably_damaging(0.992) TCGA-BT-A2LA-01 4 175429877 175429877 C T HPGD Missense_Mutation p.G131S 0.30 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 4 62598942 62598942 C T LPHN3 Nonsense_Mutation p.Q289* 0.74 TCGA-BT-A2LA-01 4 62863951 62863951 G A LPHN3 Silent p.L1053L 0.76 TCGA-BT-A2LA-01 4 69696436 69696436 C T UGT2B10 Nonsense_Mutation p.R476* 0.32 TCGA-BT-A2LA-01 4 73963914 73963914 G A ANKRD17 Missense_Mutation p.R1633C 0.61 benign(0.041) TCGA-BT-A2LA-01 4 843557 843557 C T GAK Silent p.A1280A 0.46 TCGA-BT-A2LA-01 5 1074783 1074783 G A SLC12A7 Silent p.A657A 0.20 TCGA-BT-A2LA-01 5 118580221 118580221 G A DMXL1 Missense_Mutation p.D2937N 0.74 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LA-01 5 133537632 133537632 A G PPP2CA Silent p.D131D 0.27 TCGA-BT-A2LA-01 5 138718984 138718984 G A SLC23A1 5'Flank 0.51 TCGA-BT-A2LA-01 5 141329087 141329087 G A PCDH12 Nonsense_Mutation p.Q1014* 0.31 TCGA-BT-A2LA-01 5 147286041 147286041 C G C5orf46 Silent p.L8L 0.27 TCGA-BT-A2LA-01 5 150406496 150406496 G A GPX3 Missense_Mutation p.G93S 0.25 deleterious(0.03) probably_damaging(0.936) TCGA-BT-A2LA-01 5 167855090 167855090 C T WWC1 Silent p.A621A 0.33 TCGA-BT-A2LA-01 5 170722900 170722900 G A RANBP17 Missense_Mutation p.E1018K 0.65 tolerated(0.47) benign(0.115) TCGA-BT-A2LA-01 5 19473678 19473678 C T CDH18 Missense_Mutation p.R677K 0.19 deleterious(0.04) possibly_damaging(0.573) TCGA-BT-A2LA-01 5 41382415 41382415 C T PLCXD3 Missense_Mutation p.E109K 0.13 deleterious(0.01) possibly_damaging(0.627) TCGA-BT-A2LA-01 6 109179430 109179430 G A ARMC2 Missense_Mutation p.D83N 0.51 tolerated(0.06) possibly_damaging(0.71) TCGA-BT-A2LA-01 6 109179469 109179469 G C ARMC2 Missense_Mutation p.E96Q 0.57 deleterious(0.05) benign(0.023) TCGA-BT-A2LA-01 6 11714727 11714727 C T ADTRP Missense_Mutation p.R244Q 0.21 tolerated(0.78) benign(0.004) TCGA-BT-A2LA-01 6 133769288 133769288 T C EYA4 Missense_Mutation p.L83P 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BT-A2LA-01 6 144872169 144872169 G C UTRN Missense_Mutation p.L2293F 0.44 deleterious(0) probably_damaging(0.996) TCGA-BT-A2LA-01 6 152523045 152523045 C A SYNE1 Nonsense_Mutation p.E7687* 0.12 TCGA-BT-A2LA-01 6 52895899 52895899 G C ICK Missense_Mutation p.Q108E 0.90 deleterious(0.01) possibly_damaging(0.704) TCGA-BT-A2LA-01 6 89895077 89895077 T G GABRR1 Missense_Mutation p.I250L 0.43 deleterious(0.03) possibly_damaging(0.512) TCGA-BT-A2LA-01 7 138281251 138281251 C G SVOPL Missense_Mutation p.G460R 0.21 tolerated(0.48) benign(0.25) TCGA-BT-A2LA-01 7 139726084 139726084 C T PARP12 Missense_Mutation p.G565S 0.18 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 7 149477948 149477948 C T SSPO RNA 0.38 TCGA-BT-A2LA-01 7 150772339 150772339 C T SLC4A2 Intron 0.30 TCGA-BT-A2LA-01 7 150772847 150772847 C G SLC4A2 Silent p.V1152V 0.53 TCGA-BT-A2LA-01 7 1588230 1588230 C T TMEM184A Missense_Mutation p.E247K 0.24 deleterious(0) benign(0.11) TCGA-BT-A2LA-01 7 48019109 48019109 A C HUS1 Missense_Mutation p.F3C 0.59 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 7 8790950 8790950 G A NXPH1 Missense_Mutation p.D123N 0.20 deleterious(0.01) probably_damaging(1) TCGA-BT-A2LA-01 8 100847894 100847894 G C VPS13B Missense_Mutation p.L3315F 0.38 tolerated(0.11) possibly_damaging(0.587) TCGA-BT-A2LA-01 8 125052165 125052165 G A FER1L6 Missense_Mutation p.R836Q 0.24 deleterious(0.02) probably_damaging(0.964) TCGA-BT-A2LA-01 8 144358717 144358717 G C GLI4 Missense_Mutation p.E292Q 0.53 deleterious(0.03) probably_damaging(0.998) TCGA-BT-A2LA-01 8 144997754 144997754 C T PLEC Missense_Mutation p.E2252K 0.48 unknown(0) TCGA-BT-A2LA-01 8 22412427 22412427 G A SORBS3 Missense_Mutation p.D52N 0.27 deleterious(0) probably_damaging(1) TCGA-BT-A2LA-01 8 2800099 2800099 G T CSMD1 Missense_Mutation p.S3477Y 0.26 possibly_damaging(0.735) TCGA-BT-A2LA-01 8 68396996 68396996 G A CPA6 Missense_Mutation p.A222V 0.27 tolerated(0.36) benign(0.007) TCGA-BT-A2LA-01 8 95853805 95853805 G C INTS8 Missense_Mutation p.K368N 0.45 tolerated(0.36) benign(0.001) TCGA-BT-A2LA-01 9 117666360 117666360 C T TNFSF8 Missense_Mutation p.V186I 0.20 tolerated(1) benign(0.002) TCGA-BT-A2LA-01 9 127174718 127174718 G C PSMB7 Missense_Mutation p.S103C 0.23 deleterious(0) possibly_damaging(0.56) TCGA-BT-A2LA-01 9 127952063 127952063 G A PPP6C 5'UTR 0.47 TCGA-BT-A2LA-01 9 133738336 133738336 C T ABL1 Missense_Mutation p.H265Y 0.51 deleterious(0) probably_damaging(0.99) TCGA-BT-A2LA-01 9 136402607 136402607 G A ADAMTSL2 Silent p.T57T 0.22 TCGA-BT-A2LA-01 9 139228940 139228940 C T GPSM1 Silent p.G35G 0.12 TCGA-BT-A2LA-01 9 139733422 139733422 G A RABL6 Missense_Mutation p.E449K 0.32 deleterious(0.01) benign(0.013) TCGA-BT-A2LA-01 9 140356044 140356044 G A PNPLA7 Missense_Mutation p.T1262M 0.34 deleterious(0) possibly_damaging(0.715) TCGA-BT-A2LA-01 9 16419108 16419108 C G BNC2 Missense_Mutation p.R1060T 0.94 deleterious(0) probably_damaging(0.991) TCGA-BT-A2LA-01 9 35906532 35906532 C T HRCT1 Missense_Mutation p.P83L 0.12 tolerated_low_confidence(0.23) benign(0) TCGA-BT-A2LA-01 9 86587839 86587839 T C HNRNPK Missense_Mutation p.T189A 0.43 deleterious(0.03) benign(0.029) TCGA-BT-A2LA-01 9 96847646 96847646 G C PTPDC1 Missense_Mutation p.E118Q 0.47 deleterious(0.01) possibly_damaging(0.885) TCGA-BT-A2LA-01 9 97897751 97897751 G C FANCC Silent p.V240V 0.34 TCGA-BT-A2LA-01 X 106846066 106846066 C T FRMPD3 Silent p.N1632N 0.60 TCGA-BT-A2LA-01 X 14625373 14625373 C A GLRA2 Missense_Mutation p.T233K 0.43 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LA-01 X 152991100 152991100 C T ABCD1 Missense_Mutation p.P127S 1.00 tolerated(0.41) benign(0.221) TCGA-BT-A2LA-01 X 152991101 152991101 C T ABCD1 Missense_Mutation p.P127L 1.00 tolerated(1) benign(0.028) TCGA-BT-A2LA-01 X 2871265 2871265 C T ARSE Missense_Mutation p.G117R 0.59 deleterious(0) probably_damaging(0.96) TCGA-BT-A2LA-01 X 54069201 54069201 C G PHF8 Silent p.T23T 1.00 TCGA-BT-A2LA-01 X 69455617 69455617 C T AWAT1 Missense_Mutation p.P43L 0.96 tolerated(1) benign(0.01) TCGA-BT-A2LB-01 10 101190340 101190340 C T GOT1 5'UTR 0.39 TCGA-BT-A2LB-01 10 102256971 102256971 T C SEC31B Missense_Mutation p.Y686C 0.23 deleterious(0) probably_damaging(0.987) TCGA-BT-A2LB-01 10 103868023 103868023 C T LDB1 Missense_Mutation p.E355K 0.21 deleterious(0.01) probably_damaging(0.955) TCGA-BT-A2LB-01 10 105802183 105802183 T C COL17A1 Missense_Mutation p.H849R 0.16 benign(0.064) TCGA-BT-A2LB-01 10 1066834 1066834 T C IDI2 Missense_Mutation p.Y80C 0.37 tolerated(0.55) probably_damaging(0.945) TCGA-BT-A2LB-01 10 112641080 112641080 A G PDCD4 Missense_Mutation p.I45V 0.21 tolerated(0.72) benign(0.001) TCGA-BT-A2LB-01 10 112771502 112771502 C G SHOC2 Missense_Mutation p.Q559E 0.38 tolerated(1) benign(0.003) TCGA-BT-A2LB-01 10 119799820 119799820 C T RAB11FIP2 Missense_Mutation p.E204K 0.39 tolerated(0.14) benign(0.185) TCGA-BT-A2LB-01 10 120802040 120802040 G A EIF3A Missense_Mutation p.P998S 0.39 tolerated(0.07) probably_damaging(0.972) TCGA-BT-A2LB-01 10 121652347 121652347 C T SEC23IP Missense_Mutation p.S18L 0.21 deleterious_low_confidence(0) benign(0.004) TCGA-BT-A2LB-01 10 121671610 121671610 G A SEC23IP Missense_Mutation p.D416N 0.39 deleterious(0.04) probably_damaging(1) TCGA-BT-A2LB-01 10 123258016 123258016 T C FGFR2 Silent p.T556T 0.10 TCGA-BT-A2LB-01 10 123845111 123845111 G A TACC2 Silent p.K1032K 0.11 TCGA-BT-A2LB-01 10 126370704 126370704 G A FAM53B Silent p.C126C 0.14 TCGA-BT-A2LB-01 10 133949530 133949530 C T JAKMIP3 Missense_Mutation p.R356C 0.47 deleterious(0) probably_damaging(0.921) TCGA-BT-A2LB-01 10 13782239 13782239 G A FRMD4A Silent p.I209I 0.23 TCGA-BT-A2LB-01 10 17686252 17686252 G A STAM 5'UTR 0.43 TCGA-BT-A2LB-01 10 20453444 20453444 A T PLXDC2 Missense_Mutation p.K277N 0.08 deleterious(0) possibly_damaging(0.846) TCGA-BT-A2LB-01 10 27149698 27149698 T C ABI1 Missense_Mutation p.Y32C 0.27 deleterious(0) possibly_damaging(0.889) TCGA-BT-A2LB-01 10 27793340 27793340 C T RAB18 Silent p.I14I 0.35 TCGA-BT-A2LB-01 10 35842099 35842101 CAC T CCNY Frame_Shift_Del p.T245Gfs*13 0.21 TCGA-BT-A2LB-01 10 48389779 48389779 C T RBP3 Missense_Mutation p.D367N 0.29 deleterious(0.03) benign(0.113) TCGA-BT-A2LB-01 10 48389782 48389782 C T RBP3 Missense_Mutation p.E366K 0.30 tolerated(0.13) possibly_damaging(0.599) TCGA-BT-A2LB-01 10 62631954 62631954 G A RHOBTB1 Missense_Mutation p.S637L 0.23 tolerated(0.36) benign(0.033) TCGA-BT-A2LB-01 10 70930917 70930917 A G VPS26A Missense_Mutation p.I292M 0.26 deleterious(0.01) possibly_damaging(0.449) TCGA-BT-A2LB-01 10 70940254 70940254 G A SUPV3L1 Silent p.V69V 0.18 TCGA-BT-A2LB-01 10 70967593 70967593 G T SUPV3L1 Missense_Mutation p.W607C 0.20 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LB-01 10 75533107 75533107 A T FUT11 Missense_Mutation p.T290S 0.33 deleterious(0) probably_damaging(0.998) TCGA-BT-A2LB-01 10 75556602 75556602 C T ZSWIM8 Missense_Mutation p.S1035F 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-BT-A2LB-01 10 82280591 82280591 A G TSPAN14 3'UTR 0.15 TCGA-BT-A2LB-01 10 88197236 88197236 T C WAPAL 3'UTR 0.24 TCGA-BT-A2LB-01 10 90750701 90750701 C T ACTA2 5'UTR 0.32 TCGA-BT-A2LB-01 10 93605573 93605573 C G TNKS2 Missense_Mutation p.A745G 0.11 tolerated(1) probably_damaging(0.926) TCGA-BT-A2LB-01 10 93768614 93768614 A G BTAF1 Missense_Mutation p.N1281S 0.19 deleterious(0.03) possibly_damaging(0.733) TCGA-BT-A2LB-01 10 94757304 94757304 A G EXOC6 Missense_Mutation p.D676G 0.13 deleterious(0.01) possibly_damaging(0.517) TCGA-BT-A2LB-01 10 95113570 95113570 G A MYOF Missense_Mutation p.S1160L 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.12 TCGA-BT-A2LB-01 10 98031174 98031174 G C BLNK 5'UTR 0.11 TCGA-BT-A2LB-01 10 98079103 98079103 T C DNTT Missense_Mutation p.C155R 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 10 99186039 99186039 C T PGAM1 5'UTR 0.13 TCGA-BT-A2LB-01 11 10327902 10327902 G A ADM Missense_Mutation p.R91Q 0.45 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 11 108383163 108383163 C G EXPH5 Missense_Mutation p.R1024T 0.47 deleterious(0.02) benign(0.208) TCGA-BT-A2LB-01 11 111154990 111154990 G A C11orf53 Missense_Mutation p.G66E 0.61 deleterious(0) probably_damaging(0.957) TCGA-BT-A2LB-01 11 118359411 118359411 A - KMT2A Frame_Shift_Del p.N1473Ifs*113 0.32 TCGA-BT-A2LB-01 11 11971470 11971470 A G USP47 Missense_Mutation p.K1060R 0.26 tolerated(0.38) benign(0.172) TCGA-BT-A2LB-01 11 130773221 130773221 T C SNX19 Silent p.E834E 0.43 TCGA-BT-A2LB-01 11 14666332 14666332 C T PDE3B Silent p.L237L 0.24 TCGA-BT-A2LB-01 11 14913753 14913753 G C CYP2R1 5'UTR 0.15 TCGA-BT-A2LB-01 11 1586951 1586951 C T DUSP8 Missense_Mutation p.V36M 0.12 deleterious(0) possibly_damaging(0.841) TCGA-BT-A2LB-01 11 19259679 19259679 C T E2F8 Missense_Mutation p.E6K 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-BT-A2LB-01 11 27360567 27360567 T C CCDC34 Missense_Mutation p.N308S 0.17 tolerated(0.27) benign(0.23) TCGA-BT-A2LB-01 11 27389570 27389570 G A LGR4 Silent p.G900G 0.33 TCGA-BT-A2LB-01 11 294604 294604 C T ATHL1 Missense_Mutation p.P690L 0.17 tolerated(0.65) benign(0.004) TCGA-BT-A2LB-01 11 31823446 31823446 T A PAX6 Silent p.A52A 0.30 TCGA-BT-A2LB-01 11 32410605 32410605 C G WT1 Nonstop_Mutation p.*518Sext*22 0.45 TCGA-BT-A2LB-01 11 3249906 3249906 T C MRGPRE Missense_Mutation p.N41D 0.36 deleterious(0.02) probably_damaging(0.925) TCGA-BT-A2LB-01 11 33361046 33361046 A G HIPK3 Missense_Mutation p.M527V 0.21 deleterious(0.01) probably_damaging(0.909) TCGA-BT-A2LB-01 11 534226 534226 C T HRAS Missense_Mutation p.D33N 0.31 deleterious(0.03) probably_damaging(0.956) TCGA-BT-A2LB-01 11 55322644 55322644 A G OR4C15 Missense_Mutation p.K288E 0.20 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-BT-A2LB-01 11 56058202 56058202 G T OR8H1 Missense_Mutation p.L113I 0.23 deleterious(0.04) benign(0.191) TCGA-BT-A2LB-01 11 57156559 57156559 T G PRG2 Missense_Mutation p.K97T 0.17 tolerated(0.1) benign(0.062) TCGA-BT-A2LB-01 11 57467491 57467491 G A ZDHHC5 Silent p.E712E 0.48 TCGA-BT-A2LB-01 11 58384270 58384270 C A ZFP91 Missense_Mutation p.T395N 0.17 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 11 58384283 58384283 A G ZFP91 Silent p.P399P 0.20 TCGA-BT-A2LB-01 11 60184148 60184148 G A MS4A14 Silent p.Q602Q 0.67 TCGA-BT-A2LB-01 11 61111381 61111381 G A DAK Missense_Mutation p.G346R 0.14 deleterious(0.04) benign(0.062) TCGA-BT-A2LB-01 11 61318925 61318925 T C SYT7 Missense_Mutation p.Y49C 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-BT-A2LB-01 11 61511362 61511362 G A DAGLA Missense_Mutation p.D844N 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-BT-A2LB-01 11 62433830 62433830 G A C11orf48 Intron 0.12 TCGA-BT-A2LB-01 11 64023082 64023082 C T PLCB3 Silent p.F197F 0.45 TCGA-BT-A2LB-01 11 64085722 64085722 C T PRDX5 Missense_Mutation p.S12L 0.12 tolerated_low_confidence(0.18) benign(0) TCGA-BT-A2LB-01 11 64669497 64669497 G A ATG2A Silent p.G1352G 0.08 TCGA-BT-A2LB-01 11 66272161 66272161 G A DPP3 Missense_Mutation p.E653K 0.26 tolerated(0.19) benign(0.078) TCGA-BT-A2LB-01 11 66617203 66617203 G A PC Missense_Mutation p.S1009L 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 11 67161232 67161232 G A RAD9A Silent p.S140S 0.36 TCGA-BT-A2LB-01 11 703012 703012 C T TMEM80 Silent p.T123T 0.18 TCGA-BT-A2LB-01 11 73849870 73849870 G A C2CD3 Silent p.L284L 0.12 TCGA-BT-A2LB-01 11 763392 763392 C T TALDO1 Silent p.F170F 0.34 TCGA-BT-A2LB-01 11 82643785 82643785 A T C11orf82 Missense_Mutation p.T469S 0.43 tolerated(0.07) benign(0.437) TCGA-BT-A2LB-01 11 9161320 9161320 G A DENND5A Silent p.I1254I 0.22 TCGA-BT-A2LB-01 11 94554952 94554952 C T AMOTL1 Nonsense_Mutation p.Q460* 0.44 TCGA-BT-A2LB-01 12 102036322 102036322 A G MYBPC1 Missense_Mutation p.K239R 0.33 tolerated(0.12) benign(0.008) TCGA-BT-A2LB-01 12 102107950 102107950 G A CHPT1 Missense_Mutation p.R119K 0.28 deleterious(0) probably_damaging(0.99) TCGA-BT-A2LB-01 12 1025884 1025884 G A RAD52 Missense_Mutation p.H216Y 0.23 tolerated(1) benign(0.008) TCGA-BT-A2LB-01 12 104336508 104336508 G A HSP90B1 Silent p.Q526Q 0.22 TCGA-BT-A2LB-01 12 107371523 107371523 C T MTERFD3 Missense_Mutation p.E324K 0.26 deleterious(0) probably_damaging(0.938) TCGA-BT-A2LB-01 12 109052672 109052672 A C CORO1C Missense_Mutation p.W158G 0.24 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 12 109889372 109889372 G C KCTD10 3'UTR 0.21 TCGA-BT-A2LB-01 12 109935646 109935646 C T UBE3B Missense_Mutation p.S246L 0.26 deleterious(0) benign(0.19) TCGA-BT-A2LB-01 12 109940962 109940962 A G UBE3B Missense_Mutation p.T473A 0.22 tolerated(0.09) possibly_damaging(0.718) TCGA-BT-A2LB-01 12 112645806 112645806 T G HECTD4 Splice_Site p.X2523_splice 0.20 TCGA-BT-A2LB-01 12 113442824 113442824 C A OAS2 Missense_Mutation p.T422N 0.35 tolerated(0.34) benign(0.081) TCGA-BT-A2LB-01 12 11547453 11547453 C A PRB2 Nonsense_Mutation p.E26* 0.24 TCGA-BT-A2LB-01 12 11548455 11548455 C G PRB2 Missense_Mutation p.L3F 0.16 tolerated_low_confidence(0.23) unknown(0) TCGA-BT-A2LB-01 12 124311275 124311275 G A DNAH10 Silent p.L1289L 0.29 TCGA-BT-A2LB-01 12 124326021 124326021 G A DNAH10 Silent p.L1645L 0.39 TCGA-BT-A2LB-01 12 125398318 125398318 T G UBC 5'UTR 0.36 TCGA-BT-A2LB-01 12 12674023 12674023 C T DUSP16 Missense_Mutation p.E4K 0.37 deleterious(0.02) benign(0.146) TCGA-BT-A2LB-01 12 132416681 132416681 C G PUS1 Intron 0.15 TCGA-BT-A2LB-01 12 133351795 133351795 T G GOLGA3 Missense_Mutation p.N1359H 0.24 deleterious(0) probably_damaging(0.91) TCGA-BT-A2LB-01 12 14927324 14927324 C T H2AFJ 5'UTR 0.28 TCGA-BT-A2LB-01 12 2017134 2017134 C T CACNA2D4 Missense_Mutation p.E186K 0.32 tolerated(0.06) benign(0.14) TCGA-BT-A2LB-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.39 TCGA-BT-A2LB-01 12 20799433 20799433 G A PDE3A Missense_Mutation p.R754K 0.44 deleterious(0.01) benign(0.038) TCGA-BT-A2LB-01 12 2795357 2795357 A G CACNA1C Silent p.E1950E 0.23 TCGA-BT-A2LB-01 12 31595714 31595714 A C DENND5B Missense_Mutation p.S669R 0.21 tolerated(0.05) benign(0.082) TCGA-BT-A2LB-01 12 32906904 32906904 G A YARS2 Missense_Mutation p.P299S 0.32 tolerated(0.17) benign(0.325) TCGA-BT-A2LB-01 12 40748212 40748212 G A LRRK2 Missense_Mutation p.E2230K 0.23 tolerated(0.23) benign(0.015) TCGA-BT-A2LB-01 12 41327360 41327360 A T CNTN1 Silent p.G267G 0.25 TCGA-BT-A2LB-01 12 46287315 46287315 C T ARID2 Nonsense_Mutation p.R1754* 0.38 TCGA-BT-A2LB-01 12 48119261 48119261 A T ENDOU 5'UTR 0.39 TCGA-BT-A2LB-01 12 48723371 48723371 G A H1FNT Silent p.A99A 0.51 TCGA-BT-A2LB-01 12 49719543 49719543 C G TROAP Missense_Mutation p.S170C 0.23 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LB-01 12 50571638 50571638 G A LIMA1 Missense_Mutation p.P498S 0.35 deleterious(0) possibly_damaging(0.772) TCGA-BT-A2LB-01 12 51384657 51384657 A G SLC11A2 Missense_Mutation p.V528A 0.34 tolerated(0.08) benign(0.172) TCGA-BT-A2LB-01 12 52777374 52777374 T C KRT84 Missense_Mutation p.K252R 0.15 tolerated(0.19) probably_damaging(0.996) TCGA-BT-A2LB-01 12 53186528 53186528 A G KRT3 Silent p.D330D 0.30 TCGA-BT-A2LB-01 12 53573723 53573723 T C CSAD 5'UTR 0.42 TCGA-BT-A2LB-01 12 54115352 54115352 C T CALCOCO1 Silent p.L219L 0.34 TCGA-BT-A2LB-01 12 54428131 54428131 A T HOXC5 Missense_Mutation p.H175L 0.38 deleterious(0) probably_damaging(0.995) TCGA-BT-A2LB-01 12 55714720 55714720 C T OR6C1 Silent p.L113L 0.28 TCGA-BT-A2LB-01 12 55794973 55794973 A G OR6C65 Missense_Mutation p.K221E 0.27 deleterious_low_confidence(0.02) benign(0.155) TCGA-BT-A2LB-01 12 55846108 55846108 A G OR6C2 Silent p.V37V 0.33 TCGA-BT-A2LB-01 12 56122148 56122148 G A CD63 Intron 0.39 TCGA-BT-A2LB-01 12 56396035 56396035 C T SUOX Silent p.L10L 0.31 TCGA-BT-A2LB-01 12 6675746 6675746 T C NOP2 Missense_Mutation p.K63E 0.43 tolerated(0.7) benign(0.005) TCGA-BT-A2LB-01 12 71833861 71833861 A G LGR5 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-BT-A2LB-01 12 72080580 72080580 C A TMEM19 Missense_Mutation p.S40R 0.13 deleterious(0.02) possibly_damaging(0.766) TCGA-BT-A2LB-01 12 79689917 79689917 C G SYT1 Nonsense_Mutation p.Y181* 0.43 TCGA-BT-A2LB-01 12 80615964 80615964 G A OTOGL Missense_Mutation p.G134E 0.40 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 12 82147869 82147869 A G PPFIA2 Silent p.R44R 0.13 TCGA-BT-A2LB-01 12 86276100 86276112 GAGAATAAACCCA - NTS Frame_Shift_Del p.N155Dfs*30 0.16 TCGA-BT-A2LB-01 12 88482816 88482816 G C CEP290 Missense_Mutation p.A1341G 0.34 benign(0.013) TCGA-BT-A2LB-01 12 91449642 91449642 T C KERA Silent p.P139P 0.22 TCGA-BT-A2LB-01 12 96374496 96374496 G C HAL Missense_Mutation p.L453V 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-BT-A2LB-01 12 98926711 98926711 G A TMPO Missense_Mutation p.E226K 0.35 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-BT-A2LB-01 13 113893835 113893835 G T CUL4A Silent p.A335A 0.21 TCGA-BT-A2LB-01 13 114748717 114748717 A G RASA3 3'UTR 0.20 TCGA-BT-A2LB-01 13 20220640 20220640 G C MPHOSPH8 Missense_Mutation p.E143Q 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-BT-A2LB-01 13 20220723 20220723 G A MPHOSPH8 Silent p.K170K 0.15 TCGA-BT-A2LB-01 13 20220818 20220818 G C MPHOSPH8 Missense_Mutation p.R202T 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BT-A2LB-01 13 20221193 20221193 G C MPHOSPH8 Missense_Mutation p.R327T 0.14 deleterious_low_confidence(0) benign(0.159) TCGA-BT-A2LB-01 13 20633593 20633593 C T ZMYM2 Missense_Mutation p.T877I 0.30 tolerated(0.16) benign(0.024) TCGA-BT-A2LB-01 13 21875617 21875617 G A LINC00422 3'Flank 0.24 TCGA-BT-A2LB-01 13 28494606 28494606 G A PDX1 Missense_Mutation p.E111K 0.50 tolerated(0.08) possibly_damaging(0.787) TCGA-BT-A2LB-01 13 33327664 33327664 A G PDS5B Silent p.A977A 0.10 TCGA-BT-A2LB-01 13 33635170 33635170 G A KL Missense_Mutation p.A652T 0.16 tolerated(0.6) benign(0.035) TCGA-BT-A2LB-01 13 37603934 37603934 C T SUPT20H Missense_Mutation p.D321N 0.14 deleterious(0.01) benign(0.313) TCGA-BT-A2LB-01 13 39262253 39262253 G A FREM2 Missense_Mutation p.A258T 0.19 tolerated(0.46) benign(0.047) TCGA-BT-A2LB-01 13 39621938 39621938 C T NHLRC3 Nonsense_Mutation p.Q307* 0.30 TCGA-BT-A2LB-01 13 41134387 41134387 A G FOXO1 Missense_Mutation p.L414S 0.20 tolerated(0.23) benign(0.368) TCGA-BT-A2LB-01 13 42189117 42189117 C T VWA8 Missense_Mutation p.G1572E 0.17 deleterious(0) probably_damaging(0.992) TCGA-BT-A2LB-01 13 42763216 42763216 G A DGKH Silent p.L561L 0.21 TCGA-BT-A2LB-01 13 46661885 46661885 A G CPB2 Missense_Mutation p.Y49H 0.42 tolerated(0.45) benign(0.029) TCGA-BT-A2LB-01 13 50050956 50050956 A T SETDB2 Missense_Mutation p.Q229L 0.41 tolerated(1) probably_damaging(0.999) TCGA-BT-A2LB-01 13 51939882 51939882 T C INTS6 3'UTR 0.46 TCGA-BT-A2LB-01 13 53035696 53035696 A G CKAP2 Silent p.T246T 0.24 TCGA-BT-A2LB-01 13 77669735 77669735 G A MYCBP2 Silent p.V3281V 0.42 TCGA-BT-A2LB-01 13 77852999 77852999 T C MYCBP2 Silent p.T176T 0.35 TCGA-BT-A2LB-01 13 98086808 98086808 C T RAP2A Silent p.F28F 0.23 TCGA-BT-A2LB-01 13 99083317 99083317 G A FARP1 Nonsense_Mutation p.W642* 0.18 TCGA-BT-A2LB-01 14 102446773 102446773 C A DYNC1H1 Missense_Mutation p.R283S 0.10 benign(0.371) TCGA-BT-A2LB-01 14 102805205 102805205 C G ZNF839 Missense_Mutation p.P571R 0.14 tolerated(0.63) possibly_damaging(0.732) TCGA-BT-A2LB-01 14 103996324 103996324 C G TRMT61A Missense_Mutation p.F3L 0.24 deleterious(0.04) probably_damaging(0.914) TCGA-BT-A2LB-01 14 105407270 105407270 A G AHNAK2 Missense_Mutation p.S4840P 0.24 possibly_damaging(0.877) TCGA-BT-A2LB-01 14 19566047 19566047 A G POTEG Missense_Mutation p.Q364R 0.07 tolerated(0.26) benign(0.349) TCGA-BT-A2LB-01 14 20871547 20871547 C G TEP1 Missense_Mutation p.E419Q 0.39 tolerated(0.3) possibly_damaging(0.719) TCGA-BT-A2LB-01 14 23451348 23451348 C T AJUBA Missense_Mutation p.G43E 0.20 deleterious_low_confidence(0.03) benign(0.115) TCGA-BT-A2LB-01 14 24036583 24036583 C T AP1G2 5'UTR 0.36 TCGA-BT-A2LB-01 14 24470602 24470602 C T DHRS4L2 Missense_Mutation p.P181S 0.21 tolerated(0.08) benign(0.065) TCGA-BT-A2LB-01 14 24551781 24551781 C T NRL Missense_Mutation p.E93K 0.23 deleterious(0) benign(0.108) TCGA-BT-A2LB-01 14 24617067 24617067 G A RNF31 Missense_Mutation p.A54T 0.29 tolerated(0.19) benign(0.002) TCGA-BT-A2LB-01 14 24780363 24780363 G A LTB4R2 Missense_Mutation p.D165N 0.27 tolerated(0.23) benign(0.011) TCGA-BT-A2LB-01 14 30046445 30046445 C T PRKD1 Silent p.%3D 0.29 TCGA-BT-A2LB-01 14 31416386 31416386 G A STRN3 Missense_Mutation p.S209L 0.29 tolerated(0.68) benign(0.004) TCGA-BT-A2LB-01 14 37050400 37050400 G A NKX2-8 Missense_Mutation p.R143C 0.31 deleterious(0) probably_damaging(0.935) TCGA-BT-A2LB-01 14 37739687 37739687 C T MIPOL1 Silent p.L150L 0.33 TCGA-BT-A2LB-01 14 38061866 38061866 C T FOXA1 Missense_Mutation p.M41I 0.13 tolerated(0.05) possibly_damaging(0.673) TCGA-BT-A2LB-01 14 42356687 42356687 C T LRFN5 Missense_Mutation p.P287S 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 14 45414370 45414370 C T KLHL28 Silent p.L254L 0.17 TCGA-BT-A2LB-01 14 50559295 50559295 T C C14orf183 Missense_Mutation p.M23V 0.29 deleterious_low_confidence(0) benign(0.043) TCGA-BT-A2LB-01 14 58820410 58820410 G A ARID4A Missense_Mutation p.E564K 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-BT-A2LB-01 14 60945040 60945040 G A C14orf39 Nonsense_Mutation p.Q101* 0.30 TCGA-BT-A2LB-01 14 65008648 65008648 G C HSPA2 Missense_Mutation p.E361Q 0.25 tolerated_low_confidence(0.06) possibly_damaging(0.678) TCGA-BT-A2LB-01 14 67768707 67768707 G A MPP5 Missense_Mutation p.D225N 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-BT-A2LB-01 14 70513028 70513028 C G SLC8A3 Missense_Mutation p.S807T 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 14 70634195 70634195 C T SLC8A3 Silent p.E315E 0.25 TCGA-BT-A2LB-01 14 71134362 71134362 A C TTC9 Missense_Mutation p.N163T 0.24 deleterious(0) probably_damaging(0.985) TCGA-BT-A2LB-01 14 92258883 92258883 G A TC2N Missense_Mutation p.T292M 0.21 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 14 92336464 92336464 G A FBLN5 3'UTR 0.30 TCGA-BT-A2LB-01 14 92441026 92441026 G A TRIP11 Missense_Mutation p.S1840L 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-BT-A2LB-01 14 92466417 92466417 T A TRIP11 Silent p.A1531A 0.20 TCGA-BT-A2LB-01 14 93299524 93299524 C A GOLGA5 Missense_Mutation p.Q593K 0.29 deleterious(0.05) possibly_damaging(0.681) TCGA-BT-A2LB-01 15 20643977 20643977 G T HERC2P3 RNA 0.16 TCGA-BT-A2LB-01 15 24922847 24922847 G A NPAP1 Silent p.Q611Q 0.19 TCGA-BT-A2LB-01 15 29561649 29561649 C T NDNL2 Silent p.L87L 0.16 TCGA-BT-A2LB-01 15 31360175 31360175 T C TRPM1 Missense_Mutation p.M151V 0.20 deleterious(0.01) benign(0.094) TCGA-BT-A2LB-01 15 40241433 40241433 G A EIF2AK4 Silent p.Q159Q 0.23 TCGA-BT-A2LB-01 15 40660381 40660381 C T DISP2 Missense_Mutation p.L690F 0.25 tolerated(0.76) probably_damaging(0.999) TCGA-BT-A2LB-01 15 41165414 41165414 C T RHOV Missense_Mutation p.E185K 0.26 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 15 41165937 41165937 T A RHOV Missense_Mutation p.Q71L 0.20 tolerated(0.63) benign(0.005) TCGA-BT-A2LB-01 15 41337108 41337108 C G INO80 Missense_Mutation p.L967F 0.18 tolerated(0.07) benign(0.001) TCGA-BT-A2LB-01 15 41337203 41337203 C T INO80 Missense_Mutation p.E936K 0.23 tolerated(0.33) benign(0.001) TCGA-BT-A2LB-01 15 42704023 42704023 C T CAPN3 3'UTR 0.25 TCGA-BT-A2LB-01 15 44127283 44127283 G A WDR76 Missense_Mutation p.E163K 0.19 deleterious(0) probably_damaging(0.953) TCGA-BT-A2LB-01 15 48499890 48499890 A C SLC12A1 5'UTR 0.33 TCGA-BT-A2LB-01 15 49437268 49437268 G C COPS2 Missense_Mutation p.S21C 0.26 deleterious(0) benign(0.245) TCGA-BT-A2LB-01 15 50776527 50776527 G A USP8 Missense_Mutation p.R620K 0.15 tolerated(0.6) benign(0) TCGA-BT-A2LB-01 15 51791720 51791720 C G DMXL2 Missense_Mutation p.R1234T 0.27 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 15 51795035 51795035 G A DMXL2 Missense_Mutation p.S987L 0.15 deleterious(0) benign(0.001) TCGA-BT-A2LB-01 15 66792429 66792429 T C RPL4 Missense_Mutation p.M335V 0.24 tolerated(0.25) benign(0.01) TCGA-BT-A2LB-01 15 69080146 69080146 G A ANP32A Missense_Mutation p.S56L 0.19 deleterious(0) possibly_damaging(0.777) TCGA-BT-A2LB-01 15 69327745 69327745 C T NOX5 Nonsense_Mutation p.Q303* 0.24 TCGA-BT-A2LB-01 15 71184460 71184460 G C THAP10 Missense_Mutation p.S51W 0.17 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 15 74640360 74640360 G A CYP11A1 Silent p.I102I 0.35 TCGA-BT-A2LB-01 15 77406944 77406944 T G PEAK1 Missense_Mutation p.I1599L 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A2LB-01 15 81440822 81440822 C G C15orf26 Missense_Mutation p.P285R 0.15 tolerated(0.26) benign(0.022) TCGA-BT-A2LB-01 15 81636366 81636366 G A TMC3 Silent p.I513I 0.19 TCGA-BT-A2LB-01 15 83357579 83357579 T C AP3B2 Missense_Mutation p.K90R 0.30 tolerated(0.08) benign(0.139) TCGA-BT-A2LB-01 15 85121308 85121308 C T LINC00933 RNA 0.23 TCGA-BT-A2LB-01 15 85402570 85402570 C T ALPK3 Missense_Mutation p.S1507L 0.13 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 15 86087161 86087161 C T AKAP13 Missense_Mutation p.H213Y 0.22 deleterious(0.04) possibly_damaging(0.843) TCGA-BT-A2LB-01 15 89848417 89848417 A C FANCI Missense_Mutation p.I1044L 0.30 tolerated(0.28) benign(0) TCGA-BT-A2LB-01 15 90976974 90976974 T C IQGAP1 Silent p.D138D 0.26 TCGA-BT-A2LB-01 15 93277246 93277246 C T RP11-386M24.4 RNA 0.19 TCGA-BT-A2LB-01 16 1576661 1576661 C G IFT140 Missense_Mutation p.E846Q 0.29 deleterious(0.01) possibly_damaging(0.891) TCGA-BT-A2LB-01 16 21172532 21172532 C T TMEM159 Missense_Mutation p.S10L 0.31 deleterious(0.02) benign(0.082) TCGA-BT-A2LB-01 16 2236758 2236758 C A CASKIN1 Missense_Mutation p.R333L 0.55 probably_damaging(0.997) TCGA-BT-A2LB-01 16 23652806 23652806 G A DCTN5 5'UTR 0.57 TCGA-BT-A2LB-01 16 239316 239316 T C LUC7L Missense_Mutation p.R333G 0.61 deleterious_low_confidence(0) unknown(0) TCGA-BT-A2LB-01 16 24963676 24963676 T C ARHGAP17 Missense_Mutation p.Y327C 0.36 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 16 27373925 27373925 G A IL4R Missense_Mutation p.E418K 0.17 tolerated(0.08) benign(0.149) TCGA-BT-A2LB-01 16 28603636 28603636 G A SULT1A2 Silent p.T241T 0.17 TCGA-BT-A2LB-01 16 28935721 28935721 C T RABEP2 Intron 0.18 TCGA-BT-A2LB-01 16 29824989 29824989 C T PRRT2 Missense_Mutation p.S205L 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-BT-A2LB-01 16 29874251 29874251 C T CDIPT 5'UTR 0.19 TCGA-BT-A2LB-01 16 31098143 31098143 C T RP11-196G11.1 3'Flank 0.14 TCGA-BT-A2LB-01 16 31341893 31341893 G A ITGAM Silent p.L1082L 0.30 TCGA-BT-A2LB-01 16 48180326 48180326 C T ABCC12 Missense_Mutation p.E4K 0.12 deleterious_low_confidence(0.02) benign(0.075) TCGA-BT-A2LB-01 16 50332877 50332877 C T ADCY7 Silent p.P337P 0.41 TCGA-BT-A2LB-01 16 50359717 50359717 C T BRD7 Missense_Mutation p.D425N 0.17 deleterious(0) possibly_damaging(0.801) TCGA-BT-A2LB-01 16 57062059 57062059 G A NLRC5 Silent p.Q717Q 0.18 TCGA-BT-A2LB-01 16 57918175 57918175 C T CNGB1 Missense_Mutation p.E1217K 0.56 tolerated(0.71) benign(0.007) TCGA-BT-A2LB-01 16 67650746 67650746 T C CTCF Missense_Mutation p.F351L 0.18 deleterious(0) benign(0.211) TCGA-BT-A2LB-01 16 67865747 67865747 G C CENPT Missense_Mutation p.P145A 0.27 tolerated(0.13) benign(0.103) TCGA-BT-A2LB-01 16 68573693 68573693 G C ZFP90 5'UTR 0.25 TCGA-BT-A2LB-01 16 69375197 69375197 G A NIP7 Missense_Mutation p.V133M 0.34 deleterious(0.02) possibly_damaging(0.888) TCGA-BT-A2LB-01 16 69419544 69419544 G C TERF2 Missense_Mutation p.R69G 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-BT-A2LB-01 16 84778354 84778354 A G USP10 Silent p.E89E 0.41 TCGA-BT-A2LB-01 16 88877971 88877971 G A APRT Silent p.I58I 0.42 TCGA-BT-A2LB-01 16 89940029 89940029 C G TCF25 5'UTR 0.25 TCGA-BT-A2LB-01 17 10628432 10628432 A G TMEM220 Silent p.S61S 0.41 TCGA-BT-A2LB-01 17 1303470 1303470 G A YWHAE 5'UTR 0.47 TCGA-BT-A2LB-01 17 19705182 19705182 C G ULK2 Missense_Mutation p.G450A 0.46 deleterious(0.02) possibly_damaging(0.795) TCGA-BT-A2LB-01 17 27493277 27493277 T C MYO18A Missense_Mutation p.T228A 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A2LB-01 17 28384744 28384759 AGAACTGCCTTCAATG - EFCAB5 Frame_Shift_Del p.R806Efs*23 0.26 TCGA-BT-A2LB-01 17 29679408 29679408 C T NF1 Nonsense_Mutation p.Q2531* 0.20 TCGA-BT-A2LB-01 17 33325294 33325294 G A LIG3 Silent p.G656G 0.23 TCGA-BT-A2LB-01 17 34956152 34956152 A G DHRS11 Missense_Mutation p.K212R 0.33 tolerated(0.34) benign(0.01) TCGA-BT-A2LB-01 17 36551570 36551570 C - SOCS7 Frame_Shift_Del p.P500Qfs*33 0.26 TCGA-BT-A2LB-01 17 36909056 36909056 G A PSMB3 5'UTR 0.36 TCGA-BT-A2LB-01 17 38510642 38510642 A G RARA Missense_Mutation p.N299S 0.16 deleterious(0.02) possibly_damaging(0.451) TCGA-BT-A2LB-01 17 39521742 39521742 C T KRT33B Missense_Mutation p.A218T 0.31 tolerated(1) benign(0.002) TCGA-BT-A2LB-01 17 40761390 40761390 A T FAM134C 5'UTR 0.11 TCGA-BT-A2LB-01 17 40925491 40925491 A G VPS25 5'UTR 0.24 TCGA-BT-A2LB-01 17 41719371 41719371 C G MEOX1 Missense_Mutation p.M224I 0.20 deleterious(0) probably_damaging(0.968) TCGA-BT-A2LB-01 17 42427117 42427117 C G GRN Nonsense_Mutation p.S116* 0.13 TCGA-BT-A2LB-01 17 43318986 43318986 G C FMNL1 Missense_Mutation p.G524R 0.40 tolerated(0.12) unknown(0) TCGA-BT-A2LB-01 17 44954078 44954078 G A WNT9B Silent p.K356K 0.27 TCGA-BT-A2LB-01 17 45689897 45689897 G A NPEPPS Missense_Mutation p.E723K 0.22 tolerated(0.37) benign(0.058) TCGA-BT-A2LB-01 17 46189426 46189426 G A SNX11 Missense_Mutation p.M7I 0.18 deleterious(0.05) possibly_damaging(0.843) TCGA-BT-A2LB-01 17 4635097 4635097 G A MED11 Missense_Mutation p.E38K 0.42 deleterious(0.01) possibly_damaging(0.735) TCGA-BT-A2LB-01 17 46690570 46690570 C T HOXB8 Silent p.K242K 0.16 TCGA-BT-A2LB-01 17 47013602 47013602 G A SNF8 Silent p.L118L 0.11 TCGA-BT-A2LB-01 17 47486813 47486813 T C PHB Silent p.T91T 0.31 TCGA-BT-A2LB-01 17 48450605 48450605 G A EME1 5'UTR 0.50 TCGA-BT-A2LB-01 17 55950043 55950043 G A CUEDC1 Silent p.F255F 0.12 TCGA-BT-A2LB-01 17 56774148 56774148 G A RAD51C Missense_Mutation p.D167N 0.41 deleterious(0.04) benign(0.014) TCGA-BT-A2LB-01 17 56780655 56780655 T C RAD51C Missense_Mutation p.Y224H 0.36 tolerated(0.35) benign(0.008) TCGA-BT-A2LB-01 17 57181659 57181659 T C TRIM37 Missense_Mutation p.I40V 0.23 deleterious(0.05) benign(0.077) TCGA-BT-A2LB-01 17 61615788 61615788 C T KCNH6 Silent p.P573P 0.39 TCGA-BT-A2LB-01 17 62493064 62493064 C T POLG2 Missense_Mutation p.R8K 0.22 tolerated_low_confidence(0.19) benign(0.003) TCGA-BT-A2LB-01 17 6941694 6941694 C T SLC16A13 Silent p.L189L 0.41 TCGA-BT-A2LB-01 17 7187317 7187317 T C SLC2A4 Missense_Mutation p.M158T 0.40 deleterious(0) probably_damaging(0.944) TCGA-BT-A2LB-01 17 72352856 72352856 G T BTBD17 Silent p.A459A 0.21 TCGA-BT-A2LB-01 17 72848655 72848655 G A GRIN2C Silent p.F165F 0.27 TCGA-BT-A2LB-01 17 7329872 7329872 G T C17orf74 Nonsense_Mutation p.E188* 0.43 TCGA-BT-A2LB-01 17 73498946 73498946 C G CASKIN2 Missense_Mutation p.E737Q 0.13 deleterious(0.02) possibly_damaging(0.879) TCGA-BT-A2LB-01 17 73515107 73515107 T C TSEN54 Missense_Mutation p.V167A 0.38 deleterious(0.02) benign(0.008) TCGA-BT-A2LB-01 17 73813469 73813469 C T UNK Silent p.S389S 0.20 TCGA-BT-A2LB-01 17 74288992 74288992 C A QRICH2 Missense_Mutation p.D440Y 0.29 tolerated(0.33) benign(0.087) TCGA-BT-A2LB-01 17 7578269 7578269 G A TP53 Missense_Mutation p.L194F 0.39 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 17 76134245 76134245 C T TMC8 Silent p.L503L 0.16 TCGA-BT-A2LB-01 17 76430168 76430168 T C DNAH17 Missense_Mutation p.N4050S 0.19 benign(0.022) TCGA-BT-A2LB-01 17 78237418 78237418 T C RNF213 5'UTR 0.15 TCGA-BT-A2LB-01 17 79220205 79220205 C T SLC38A10 Silent p.Q837Q 0.22 TCGA-BT-A2LB-01 17 79257211 79257211 G A SLC38A10 Nonsense_Mutation p.Q119* 0.43 TCGA-BT-A2LB-01 17 79954451 79954451 C T ASPSCR1 Missense_Mutation p.S221L 0.20 tolerated(0.28) unknown(0) TCGA-BT-A2LB-01 17 80544936 80544936 C G FOXK2 Intron 0.31 TCGA-BT-A2LB-01 17 80899327 80899327 C T TBCD Silent p.L1178L 0.23 TCGA-BT-A2LB-01 18 12337383 12337383 C G AFG3L2 Missense_Mutation p.R711T 0.36 deleterious(0.01) benign(0.326) TCGA-BT-A2LB-01 18 14478337 14478337 T C CXADRP3 RNA 0.36 TCGA-BT-A2LB-01 18 21084405 21084405 C G C18orf8 Nonsense_Mutation p.S58* 0.28 TCGA-BT-A2LB-01 18 21148963 21148963 C T NPC1 Splice_Site p.X96_splice 0.30 TCGA-BT-A2LB-01 18 22805190 22805190 C A ZNF521 Nonsense_Mutation p.E898* 0.45 TCGA-BT-A2LB-01 18 2750410 2750410 T C SMCHD1 Missense_Mutation p.I1357T 0.27 deleterious(0) possibly_damaging(0.731) TCGA-BT-A2LB-01 18 29419397 29419397 C G TRAPPC8 Missense_Mutation p.L1287F 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-BT-A2LB-01 18 3596826 3596826 G A DLGAP1 Intron 0.38 TCGA-BT-A2LB-01 18 44595908 44595908 C T KATNAL2 Silent p.F243F 0.23 TCGA-BT-A2LB-01 18 47018092 47018092 C T RPL17 5'UTR 0.32 TCGA-BT-A2LB-01 18 55222179 55222179 G A FECH Silent p.V276V 0.23 TCGA-BT-A2LB-01 18 724590 724590 T C YES1 Missense_Mutation p.Y489C 0.27 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 19 12758381 12758381 G A MAN2B1 Missense_Mutation p.S899L 0.55 deleterious(0.03) benign(0.225) TCGA-BT-A2LB-01 19 12825962 12825962 C T TNPO2 Missense_Mutation p.D224N 0.42 deleterious(0) possibly_damaging(0.464) TCGA-BT-A2LB-01 19 15223296 15223296 C - SYDE1 Frame_Shift_Del p.R574Afs*61 0.31 TCGA-BT-A2LB-01 19 15562677 15562677 G A RASAL3 Missense_Mutation p.P989S 0.56 tolerated_low_confidence(0.33) benign(0.004) TCGA-BT-A2LB-01 19 19626839 19626839 G C NDUFA13 5'UTR 0.47 TCGA-BT-A2LB-01 19 2276228 2276228 G A C19orf35 Silent p.A291A 0.67 TCGA-BT-A2LB-01 19 33076796 33076796 G A PDCD5 Missense_Mutation p.G81R 0.15 deleterious(0.02) possibly_damaging(0.739) TCGA-BT-A2LB-01 19 39068655 39068655 G A RYR1 Missense_Mutation p.R4757H 0.33 unknown(0) TCGA-BT-A2LB-01 19 39127591 39127591 C T EIF3K 3'UTR 0.67 TCGA-BT-A2LB-01 19 40366091 40366091 A G FCGBP Missense_Mutation p.Y4715H 0.68 probably_damaging(1) TCGA-BT-A2LB-01 19 41096303 41096303 C T SHKBP1 Silent p.A581A 0.65 TCGA-BT-A2LB-01 19 41808719 41808745 GGTGGTGGTGGCTTCCGGGGCCGCGGG - HNRNPUL1 In_Frame_Del p.R618_F626del 0.17 TCGA-BT-A2LB-01 19 42891312 42891312 C T CNFN Missense_Mutation p.R111Q 0.54 deleterious(0) possibly_damaging(0.867) TCGA-BT-A2LB-01 19 44680458 44680458 C T ZNF226 Missense_Mutation p.S348L 0.60 deleterious(0.01) probably_damaging(0.979) TCGA-BT-A2LB-01 19 45477814 45477814 A G CLPTM1 Missense_Mutation p.D143G 0.50 deleterious(0) probably_damaging(0.99) TCGA-BT-A2LB-01 19 45477816 45477816 G A CLPTM1 Missense_Mutation p.G144S 0.49 deleterious(0) probably_damaging(0.954) TCGA-BT-A2LB-01 19 48867179 48867179 G A TMEM143 5'UTR 0.69 TCGA-BT-A2LB-01 19 49422510 49422510 G T NUCB1 Missense_Mutation p.R323S 0.11 tolerated(0.11) benign(0.169) TCGA-BT-A2LB-01 19 50243365 50243365 C T TSKS Missense_Mutation p.E525K 0.63 deleterious(0) probably_damaging(0.996) TCGA-BT-A2LB-01 19 55045040 55045040 C T KIR3DX1 Missense_Mutation p.R54W 0.69 deleterious(0.02) possibly_damaging(0.86) TCGA-BT-A2LB-01 19 55493759 55493759 A G NLRP2 Silent p.A231A 0.64 TCGA-BT-A2LB-01 19 5843650 5843650 G A FUT3 3'UTR 0.40 TCGA-BT-A2LB-01 19 58441801 58441801 G A ZNF418 Missense_Mutation p.S43F 0.59 deleterious(0) probably_damaging(0.951) TCGA-BT-A2LB-01 19 58489802 58489802 G A ZNF606 Missense_Mutation p.S749F 0.71 deleterious(0.01) probably_damaging(0.991) TCGA-BT-A2LB-01 19 6381161 6381161 C T GTF2F1 Missense_Mutation p.S355N 0.50 tolerated(0.46) benign(0.01) TCGA-BT-A2LB-01 19 7992108 7992108 C T TIMM44 Silent p.L441L 0.46 TCGA-BT-A2LB-01 19 9057298 9057298 C T MUC16 Missense_Mutation p.V10050M 0.39 benign(0.293) TCGA-BT-A2LB-01 1 100598732 100598732 C G TRMT13 Missense_Mutation p.T3S 0.41 tolerated_low_confidence(0.13) benign(0) TCGA-BT-A2LB-01 1 10211454 10211454 A G UBE4B Missense_Mutation p.N921D 0.12 deleterious(0.02) possibly_damaging(0.698) TCGA-BT-A2LB-01 1 104114270 104114270 C T AMY2B Nonsense_Mutation p.Q16* 0.32 TCGA-BT-A2LB-01 1 108742614 108742614 C T SLC25A24 Silent p.R49R 0.24 TCGA-BT-A2LB-01 1 110741093 110741093 C - SLC6A17 3'UTR 0.23 TCGA-BT-A2LB-01 1 110950397 110950397 G A LAMTOR5 Missense_Mutation p.S31F 0.26 tolerated_low_confidence(1) benign(0) TCGA-BT-A2LB-01 1 11097835 11097835 T G MASP2 Missense_Mutation p.N308T 0.17 deleterious(0.01) benign(0.325) TCGA-BT-A2LB-01 1 111970390 111970390 G A OVGP1 5'UTR 0.20 TCGA-BT-A2LB-01 1 111989760 111989760 C T WDR77 Silent p.K150K 0.49 TCGA-BT-A2LB-01 1 112281828 112281828 G A FAM212B Missense_Mutation p.R13C 0.31 deleterious(0.04) benign(0.016) TCGA-BT-A2LB-01 1 113638961 113638961 T C LRIG2 Silent p.F355F 0.38 TCGA-BT-A2LB-01 1 114438155 114438155 C T AP4B1 Intron 0.50 TCGA-BT-A2LB-01 1 116380930 116380930 C G NHLH2 Missense_Mutation p.E22Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-BT-A2LB-01 1 117556087 117556087 G A CD101 Missense_Mutation p.E301K 0.13 deleterious(0.02) possibly_damaging(0.507) TCGA-BT-A2LB-01 1 117629135 117629135 C G TTF2 Silent p.L717L 0.38 TCGA-BT-A2LB-01 1 1451459 1451459 C G ATAD3A Silent p.S91S 0.32 TCGA-BT-A2LB-01 1 145209152 145209152 G C RP11-458D21.5 5'UTR 0.27 TCGA-BT-A2LB-01 1 149897916 149897916 G A SF3B4 Missense_Mutation p.S242F 0.38 tolerated(0.74) unknown(0) TCGA-BT-A2LB-01 1 150972380 150972380 T C FAM63A Missense_Mutation p.I314V 0.24 tolerated(0.19) probably_damaging(0.959) TCGA-BT-A2LB-01 1 152079753 152079753 G A TCHH 3'UTR 0.29 TCGA-BT-A2LB-01 1 154493838 154493838 A G TDRD10 Silent p.T84T 0.27 TCGA-BT-A2LB-01 1 154540511 154540511 T C CHRNB2 5'UTR 0.25 TCGA-BT-A2LB-01 1 154962650 154962650 T A FLAD1 Silent p.V427V 0.35 TCGA-BT-A2LB-01 1 155294890 155294890 C T RUSC1 Intron 0.28 TCGA-BT-A2LB-01 1 156818798 156818798 C - INSRR Frame_Shift_Del p.A496Qfs*57 0.39 TCGA-BT-A2LB-01 1 158064160 158064160 C A KIRREL Silent p.R593R 0.17 TCGA-BT-A2LB-01 1 158064161 158064161 G A KIRREL Missense_Mutation p.R593Q 0.17 deleterious(0.02) possibly_damaging(0.826) TCGA-BT-A2LB-01 1 158435526 158435526 A T OR10K1 Missense_Mutation p.M59L 0.24 deleterious(0) probably_damaging(0.972) TCGA-BT-A2LB-01 1 161696644 161696644 G A FCRLB Silent p.A242A 0.40 TCGA-BT-A2LB-01 1 16265833 16265833 G A SPEN Missense_Mutation p.E3636K 0.33 benign(0.205) TCGA-BT-A2LB-01 1 16265921 16265921 G A SPEN Silent p.%3D 0.36 TCGA-BT-A2LB-01 1 16464519 16464519 C T EPHA2 Missense_Mutation p.A381T 0.46 tolerated(0.17) benign(0.01) TCGA-BT-A2LB-01 1 166926077 166926077 T G ILDR2 Missense_Mutation p.Q131P 0.14 deleterious(0.01) possibly_damaging(0.719) TCGA-BT-A2LB-01 1 172357752 172357752 A G DNM3 Silent p.T775T 0.24 TCGA-BT-A2LB-01 1 17565174 17565174 G A PADI1 Missense_Mutation p.E508K 0.25 tolerated(0.06) benign(0.052) TCGA-BT-A2LB-01 1 179621324 179621324 C T TDRD5 Missense_Mutation p.R718C 0.32 tolerated(0.17) benign(0.001) TCGA-BT-A2LB-01 1 180064655 180064655 T C CEP350 Intron 0.25 TCGA-BT-A2LB-01 1 185056735 185056735 G A RNF2 Nonsense_Mutation p.W17* 0.29 TCGA-BT-A2LB-01 1 185276256 185276256 C T IVNS1ABP Missense_Mutation p.E183K 0.32 tolerated(0.12) possibly_damaging(0.492) TCGA-BT-A2LB-01 1 185704134 185704134 A G HMCN1 Missense_Mutation p.K75E 0.37 probably_damaging(0.973) TCGA-BT-A2LB-01 1 196342326 196342326 A G KCNT2 Silent p.C449C 0.30 TCGA-BT-A2LB-01 1 197111797 197111797 C G ASPM Missense_Mutation p.E529Q 0.24 tolerated(0.19) benign(0.169) TCGA-BT-A2LB-01 1 200014630 200014630 C T NR5A2 Silent p.N127N 0.32 TCGA-BT-A2LB-01 1 201980223 201980223 T C ELF3 5'UTR 0.24 TCGA-BT-A2LB-01 1 204379892 204379892 G A PPP1R15B Silent p.F216F 0.29 TCGA-BT-A2LB-01 1 205180623 205180623 G A DSTYK Missense_Mutation p.S14L 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.885) TCGA-BT-A2LB-01 1 205499363 205499363 A G CDK18 Intron 0.38 TCGA-BT-A2LB-01 1 205633626 205633626 C T SLC45A3 Missense_Mutation p.M53I 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A2LB-01 1 205904821 205904821 T C SLC26A9 Intron 0.28 TCGA-BT-A2LB-01 1 207867757 207867757 G A CR1L Missense_Mutation p.E175K 0.22 tolerated(0.07) possibly_damaging(0.51) TCGA-BT-A2LB-01 1 208390236 208390236 C T PLXNA2 Silent p.K344K 0.38 TCGA-BT-A2LB-01 1 21212781 21212781 A G EIF4G3 Silent p.D729D 0.19 TCGA-BT-A2LB-01 1 213415584 213415584 G A RPS6KC1 Missense_Mutation p.R922K 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-BT-A2LB-01 1 216591900 216591900 G A USH2A Silent p.L203L 0.27 TCGA-BT-A2LB-01 1 223986194 223986194 C T TP53BP2 Silent p.P557P 0.29 TCGA-BT-A2LB-01 1 226340098 226340098 G A ACBD3 Missense_Mutation p.S438F 0.37 deleterious(0.02) probably_damaging(0.949) TCGA-BT-A2LB-01 1 228467915 228467915 G A OBSCN Missense_Mutation p.A2996T 0.16 benign(0.055) TCGA-BT-A2LB-01 1 229586277 229586277 C T NUP133 Missense_Mutation p.D1059N 0.25 tolerated(0.17) benign(0.005) TCGA-BT-A2LB-01 1 229625722 229625722 G A NUP133 Nonsense_Mutation p.Q392* 0.41 TCGA-BT-A2LB-01 1 230839024 230839024 C T AGT Missense_Mutation p.E441K 0.30 deleterious(0.01) possibly_damaging(0.624) TCGA-BT-A2LB-01 1 231048454 231048454 G A TTC13 Missense_Mutation p.T715I 0.14 tolerated(0.16) probably_damaging(0.999) TCGA-BT-A2LB-01 1 231069546 231069546 T G TTC13 Missense_Mutation p.K321T 0.28 tolerated(0.19) possibly_damaging(0.61) TCGA-BT-A2LB-01 1 232551310 232551310 C T SIPA1L2 Silent p.L1564L 0.30 TCGA-BT-A2LB-01 1 235338568 235338568 C T ARID4B Missense_Mutation p.D1199N 0.29 deleterious(0) possibly_damaging(0.51) TCGA-BT-A2LB-01 1 235338665 235338665 C G ARID4B Missense_Mutation p.K1166N 0.29 deleterious(0.04) probably_damaging(0.996) TCGA-BT-A2LB-01 1 23637803 23637803 T C HNRNPR Missense_Mutation p.M397V 0.11 deleterious(0.05) benign(0.257) TCGA-BT-A2LB-01 1 24383902 24383902 G A MYOM3 Silent p.I1422I 0.22 TCGA-BT-A2LB-01 1 244006518 244006518 G A AKT3 5'UTR 0.37 TCGA-BT-A2LB-01 1 248367166 248367166 G T OR2M3 Missense_Mutation p.R266L 0.34 deleterious(0.01) possibly_damaging(0.5) TCGA-BT-A2LB-01 1 27874267 27874267 G A AHDC1 Missense_Mutation p.P1454S 0.32 tolerated_low_confidence(0.19) possibly_damaging(0.803) TCGA-BT-A2LB-01 1 3386012 3386012 C T ARHGEF16 Missense_Mutation p.L293F 0.36 deleterious(0) possibly_damaging(0.836) TCGA-BT-A2LB-01 1 36752825 36752825 C T THRAP3 Nonsense_Mutation p.Q332* 0.29 TCGA-BT-A2LB-01 1 39876750 39876750 C T KIAA0754 Silent p.F135F 0.37 TCGA-BT-A2LB-01 1 40367161 40367161 G A MYCL Intron 0.43 TCGA-BT-A2LB-01 1 43909302 43909302 G A SZT2 Missense_Mutation p.R2830Q 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-BT-A2LB-01 1 43913626 43913626 G A SZT2 Missense_Mutation p.E3126K 0.44 deleterious(0) possibly_damaging(0.58) TCGA-BT-A2LB-01 1 44169946 44169946 G A KDM4A Missense_Mutation p.E1034K 0.34 deleterious(0.02) benign(0.074) TCGA-BT-A2LB-01 1 45268645 45268645 G A PLK3 Silent p.G256G 0.18 TCGA-BT-A2LB-01 1 47024330 47024330 G A MKNK1 Missense_Mutation p.P439S 0.14 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 1 4832502 4832502 C T AJAP1 Silent p.C360C 0.21 TCGA-BT-A2LB-01 1 55523773 55523773 G A PCSK9 Silent p.L415L 0.39 TCGA-BT-A2LB-01 1 55566515 55566515 C T USP24 Nonsense_Mutation p.W1756* 0.27 TCGA-BT-A2LB-01 1 57161760 57161760 G A PRKAA2 Missense_Mutation p.R239H 0.47 tolerated(0.11) benign(0.001) TCGA-BT-A2LB-01 1 57169763 57169763 C T PRKAA2 Missense_Mutation p.T303I 0.41 tolerated(0.22) benign(0.066) TCGA-BT-A2LB-01 1 57399040 57399040 G A C8B Missense_Mutation p.P507L 0.37 deleterious(0.01) probably_damaging(0.927) TCGA-BT-A2LB-01 1 6189100 6189100 C T CHD5 Silent p.Q1139Q 0.38 TCGA-BT-A2LB-01 1 84791366 84791366 A G SAMD13 Missense_Mutation p.M48V 0.37 tolerated(0.29) benign(0.002) TCGA-BT-A2LB-01 1 86591602 86591602 A C COL24A1 Silent p.P139P 0.59 TCGA-BT-A2LB-01 1 89449393 89449393 C T RBMXL1 Silent p.L39L 0.21 TCGA-BT-A2LB-01 1 89615138 89615138 G A GBP7 Missense_Mutation p.A330V 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A2LB-01 1 89734510 89734510 G A GBP5 Missense_Mutation p.H74Y 0.29 deleterious(0) possibly_damaging(0.51) TCGA-BT-A2LB-01 1 93646363 93646363 C T CCDC18 Silent p.V28V 0.19 TCGA-BT-A2LB-01 20 1291531 1291531 T C SDCBP2 Missense_Mutation p.K246R 0.27 deleterious(0.02) benign(0.049) TCGA-BT-A2LB-01 20 13756530 13756530 G A ESF1 Missense_Mutation p.R342C 0.44 deleterious(0.01) benign(0.006) TCGA-BT-A2LB-01 20 139536 139536 C T DEFB127 Silent p.I57I 0.50 TCGA-BT-A2LB-01 20 20020280 20020280 G A CRNKL1 Silent p.I667I 0.25 TCGA-BT-A2LB-01 20 20493296 20493296 C T RALGAPA2 Missense_Mutation p.E1573K 0.09 deleterious(0.04) benign(0.012) TCGA-BT-A2LB-01 20 23375803 23375803 A G NAPB Silent p.N105N 0.42 TCGA-BT-A2LB-01 20 23669392 23669392 C T CST4 Missense_Mutation p.R72Q 0.16 tolerated(0.2) benign(0.034) TCGA-BT-A2LB-01 20 25059543 25059543 G T VSX1 Missense_Mutation p.F183L 0.39 deleterious(0) possibly_damaging(0.846) TCGA-BT-A2LB-01 20 25657489 25657489 C T ZNF337 Silent p.R145R 0.18 TCGA-BT-A2LB-01 20 30193214 30193214 C T ID1 Silent p.T8T 0.34 TCGA-BT-A2LB-01 20 34286483 34286483 G A NFS1 Missense_Mutation p.P43S 0.22 tolerated_low_confidence(0.27) benign(0.001) TCGA-BT-A2LB-01 20 34459579 34459579 G A PHF20 Silent p.L370L 0.44 TCGA-BT-A2LB-01 20 37547047 37547047 T C PPP1R16B Missense_Mutation p.L481P 0.38 deleterious(0.01) benign(0.16) TCGA-BT-A2LB-01 20 37570635 37570635 A G FAM83D Missense_Mutation p.I203V 0.29 tolerated(0.09) benign(0.138) TCGA-BT-A2LB-01 20 41420011 41420011 C T PTPRT Missense_Mutation p.D104N 0.32 tolerated(0.12) benign(0.058) TCGA-BT-A2LB-01 20 43132519 43132519 G A SERINC3 Missense_Mutation p.S331F 0.35 tolerated(0.35) benign(0.063) TCGA-BT-A2LB-01 20 44803691 44803691 G A CDH22 Silent p.L647L 0.50 TCGA-BT-A2LB-01 20 46292924 46292924 G C SULF2 Silent p.T669T 0.26 TCGA-BT-A2LB-01 20 4778713 4778713 A T RASSF2 Missense_Mutation p.H26Q 0.32 tolerated(0.08) benign(0.026) TCGA-BT-A2LB-01 20 50255994 50255994 C T ATP9A Missense_Mutation p.R519Q 0.35 deleterious(0) probably_damaging(0.984) TCGA-BT-A2LB-01 20 50400861 50400861 G C SALL4 Silent p.G1035G 0.20 TCGA-BT-A2LB-01 20 5966679 5966679 C T MCM8 Missense_Mutation p.L689F 0.41 deleterious(0) probably_damaging(0.991) TCGA-BT-A2LB-01 20 6025248 6025248 G C LRRN4 Silent p.L313L 0.26 TCGA-BT-A2LB-01 20 61588228 61588228 G A SLC17A9 Nonsense_Mutation p.W57* 0.20 TCGA-BT-A2LB-01 20 896835 896835 A G ANGPT4 Missense_Mutation p.L8P 0.29 tolerated(0.05) probably_damaging(0.91) TCGA-BT-A2LB-01 21 10934121 10934121 C G TPTE Splice_Site p.X286_splice 0.12 TCGA-BT-A2LB-01 21 26978900 26978900 G C MRPL39 Silent p.L47L 0.12 TCGA-BT-A2LB-01 21 30959910 30959910 C G GRIK1 Splice_Site p.X524_splice 0.35 TCGA-BT-A2LB-01 21 33979964 33979964 A G AP000275.65 Missense_Mutation p.S124P 0.24 deleterious(0) probably_damaging(0.968) TCGA-BT-A2LB-01 21 34003938 34003938 T C SYNJ1 Silent p.Q1402Q 0.48 TCGA-BT-A2LB-01 21 34166204 34166206 TGT - C21orf62 In_Frame_Del p.N176del 0.35 TCGA-BT-A2LB-01 21 37093072 37093072 G T MIR802 RNA 0.21 TCGA-BT-A2LB-01 21 37571421 37571421 C T DOPEY2 Silent p.S64S 0.29 TCGA-BT-A2LB-01 21 43413477 43413477 G A ZBTB21 Missense_Mutation p.S243L 0.42 tolerated(0.06) benign(0.002) TCGA-BT-A2LB-01 21 45522807 45522807 C T TRAPPC10 Silent p.F1165F 0.35 TCGA-BT-A2LB-01 21 46685469 46685469 C T POFUT2 Silent p.T406T 0.20 TCGA-BT-A2LB-01 21 47704198 47704198 C A MCM3AP Missense_Mutation p.G335C 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-BT-A2LB-01 22 21380552 21380552 C T P2RX6 Silent p.F354F 0.40 TCGA-BT-A2LB-01 22 21988323 21988323 A T CCDC116 Nonsense_Mutation p.K29* 0.27 TCGA-BT-A2LB-01 22 22322014 22322014 C T TOP3B Silent p.Q271Q 0.30 TCGA-BT-A2LB-01 22 22989480 22989480 C T GGTLC2 Missense_Mutation p.P111L 0.26 deleterious(0.01) benign(0.426) TCGA-BT-A2LB-01 22 32797844 32797858 GGTTCTTAGCAAGCG - RTCB In_Frame_Del p.R125_T129del 0.31 TCGA-BT-A2LB-01 22 37887821 37887821 G C CARD10 Missense_Mutation p.N935K 0.12 tolerated(0.19) benign(0.032) TCGA-BT-A2LB-01 22 38220829 38220829 C G GALR3 Missense_Mutation p.F153L 0.27 tolerated(0.09) possibly_damaging(0.649) TCGA-BT-A2LB-01 22 38541624 38541624 C T PLA2G6 Silent p.V82V 0.30 TCGA-BT-A2LB-01 22 41513289 41513289 C T EP300 Nonsense_Mutation p.Q65* 0.31 TCGA-BT-A2LB-01 22 41985828 41985828 G A PMM1 5'UTR 0.50 TCGA-BT-A2LB-01 22 42607770 42607770 G A TCF20 Missense_Mutation p.S1181F 0.25 benign(0.158) TCGA-BT-A2LB-01 22 43570524 43570524 A C TTLL12 Missense_Mutation p.S339A 0.37 tolerated(0.09) benign(0.065) TCGA-BT-A2LB-01 22 50436125 50436125 C T IL17REL Missense_Mutation p.R289H 0.19 tolerated(0.6) benign(0.011) TCGA-BT-A2LB-01 22 50609337 50609337 C T PANX2 Silent p.L60L 0.21 TCGA-BT-A2LB-01 22 50719219 50719220 - G PLXNB2 Frame_Shift_Ins p.L1316Pfs*79 0.17 TCGA-BT-A2LB-01 2 103380863 103380863 C G TMEM182 Missense_Mutation p.S103W 0.36 tolerated(0.08) probably_damaging(0.984) TCGA-BT-A2LB-01 2 109271627 109271627 G A LIMS1 Missense_Mutation p.E33K 0.24 tolerated_low_confidence(0.07) benign(0.078) TCGA-BT-A2LB-01 2 110373335 110373335 C T SOWAHC Silent p.L423L 0.38 TCGA-BT-A2LB-01 2 1133464 1133464 T C SNTG2 Missense_Mutation p.I127T 0.35 tolerated(0.15) possibly_damaging(0.462) TCGA-BT-A2LB-01 2 113532667 113532667 G A IL1A Nonsense_Mutation p.Q265* 0.29 TCGA-BT-A2LB-01 2 127834283 127834283 C T BIN1 Splice_Site p.X29_splice 0.39 TCGA-BT-A2LB-01 2 133486457 133486457 C G NCKAP5 Missense_Mutation p.A1838P 0.17 deleterious(0.01) probably_damaging(0.921) TCGA-BT-A2LB-01 2 135922246 135922246 C T RAB3GAP1 Silent p.L897L 0.28 TCGA-BT-A2LB-01 2 135960517 135960517 C T ZRANB3 Missense_Mutation p.R1009K 0.23 tolerated(0.1) benign(0.068) TCGA-BT-A2LB-01 2 139308578 139308578 C T SPOPL Silent p.F102F 0.30 TCGA-BT-A2LB-01 2 14774914 14774914 C T FAM84A Missense_Mutation p.R271C 0.14 deleterious(0) probably_damaging(0.973) TCGA-BT-A2LB-01 2 158165086 158165086 A C GALNT5 Missense_Mutation p.Q843P 0.32 deleterious(0.03) possibly_damaging(0.74) TCGA-BT-A2LB-01 2 160257124 160257124 G A BAZ2B Nonsense_Mutation p.Q962* 0.30 TCGA-BT-A2LB-01 2 16082291 16082291 C T MYCN Silent p.F35F 0.31 TCGA-BT-A2LB-01 2 164591462 164591462 G A FIGN 5'UTR 0.20 TCGA-BT-A2LB-01 2 165586561 165586561 T C COBLL1 Missense_Mutation p.T99A 0.33 deleterious(0) probably_damaging(0.998) TCGA-BT-A2LB-01 2 166535631 166535631 G C CSRNP3 Missense_Mutation p.E376Q 0.30 tolerated(0.06) benign(0.367) TCGA-BT-A2LB-01 2 166900510 166900510 C T SCN1A Missense_Mutation p.R571K 0.31 tolerated(0.56) benign(0.024) TCGA-BT-A2LB-01 2 168725897 168725897 C T B3GALT1 Silent p.F116F 0.35 TCGA-BT-A2LB-01 2 170175331 170175331 G C LRP2 Missense_Mutation p.S84C 0.10 possibly_damaging(0.781) TCGA-BT-A2LB-01 2 17697834 17697834 A G RAD51AP2 Missense_Mutation p.Y617H 0.47 deleterious(0.05) benign(0.234) TCGA-BT-A2LB-01 2 178977522 178977522 G A RBM45 Missense_Mutation p.M83I 0.28 tolerated(0.19) benign(0.016) TCGA-BT-A2LB-01 2 179422796 179422796 A G TTN Silent p.I29095I 0.30 TCGA-BT-A2LB-01 2 179439443 179439443 T C TTN Missense_Mutation p.R23806G 0.35 TCGA-BT-A2LB-01 2 179650673 179650673 G C TTN Missense_Mutation p.H758D 0.35 TCGA-BT-A2LB-01 2 202003113 202003113 A T CFLAR Intron 0.25 TCGA-BT-A2LB-01 2 203420156 203420156 G A BMPR2 Missense_Mutation p.E590K 0.36 deleterious(0.01) probably_damaging(0.931) TCGA-BT-A2LB-01 2 20455083 20455083 T G PUM2 Missense_Mutation p.H881P 0.34 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 2 206921331 206921331 C T INO80D Silent p.E185E 0.28 TCGA-BT-A2LB-01 2 209007352 209007352 C T CRYGB 3'UTR 0.27 TCGA-BT-A2LB-01 2 218762563 218762563 C G TNS1 Missense_Mutation p.E42D 0.40 tolerated(0.06) benign(0.217) TCGA-BT-A2LB-01 2 219229358 219229358 T C C2orf62 Missense_Mutation p.L213P 0.41 deleterious(0.02) benign(0.251) TCGA-BT-A2LB-01 2 219537634 219537634 C G STK36 Missense_Mutation p.Q28E 0.38 tolerated(0.08) benign(0.063) TCGA-BT-A2LB-01 2 220406655 220406655 C T CHPF Missense_Mutation p.D191N 0.38 deleterious(0.01) benign(0.195) TCGA-BT-A2LB-01 2 224463114 224463114 C T SCG2 Missense_Mutation p.R296Q 0.11 tolerated(0.45) benign(0.017) TCGA-BT-A2LB-01 2 224849561 224849561 C T SERPINE2 Silent p.P276P 0.30 TCGA-BT-A2LB-01 2 224856541 224856541 G T SERPINE2 Missense_Mutation p.Q234K 0.22 deleterious(0) possibly_damaging(0.868) TCGA-BT-A2LB-01 2 228137702 228137702 G C COL4A3 Missense_Mutation p.G599A 0.38 unknown(0) TCGA-BT-A2LB-01 2 230787323 230787323 C G FBXO36 Missense_Mutation p.Q32E 0.25 tolerated(0.9) benign(0.001) TCGA-BT-A2LB-01 2 231035336 231035336 C T SP110 Splice_Site p.X676_splice 0.29 TCGA-BT-A2LB-01 2 231222548 231222548 G A SP140L Missense_Mutation p.E46K 0.13 tolerated(0.07) benign(0.002) TCGA-BT-A2LB-01 2 231936987 231936987 C T PSMD1 Nonsense_Mutation p.Q247* 0.30 TCGA-BT-A2LB-01 2 233626135 233626135 G A GIGYF2 Missense_Mutation p.R174Q 0.31 probably_damaging(0.992) TCGA-BT-A2LB-01 2 233651882 233651882 T G GIGYF2 Silent p.G207G 0.18 TCGA-BT-A2LB-01 2 233721509 233721509 C T GIGYF2 Missense_Mutation p.S1301L 0.31 unknown(0) TCGA-BT-A2LB-01 2 238277474 238277475 CA - COL6A3 Frame_Shift_Del p.L1544Rfs*45 0.14 TCGA-BT-A2LB-01 2 24905860 24905860 G A NCOA1 Missense_Mutation p.R132K 0.36 deleterious(0.05) probably_damaging(0.986) TCGA-BT-A2LB-01 2 25851188 25851188 G A DTNB Missense_Mutation p.H72Y 0.25 tolerated(1) probably_damaging(0.927) TCGA-BT-A2LB-01 2 26703759 26703759 C G OTOF Silent p.R566R 0.38 TCGA-BT-A2LB-01 2 26739468 26739468 C G OTOF Splice_Site p.X110_splice 0.11 TCGA-BT-A2LB-01 2 27355129 27355129 C T PREB Missense_Mutation p.G299S 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 2 27440858 27440858 G A CAD Missense_Mutation p.E66K 0.22 tolerated(0.15) benign(0.132) TCGA-BT-A2LB-01 2 27449800 27449800 A G CAD Missense_Mutation p.T753A 0.31 tolerated(0.07) benign(0.003) TCGA-BT-A2LB-01 2 27601758 27601758 C - ZNF513 Frame_Shift_Del p.P126Rfs*40 0.40 TCGA-BT-A2LB-01 2 30790955 30790955 G C LCLAT1 Missense_Mutation p.A219P 0.36 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 2 3730543 3730543 C T ALLC Silent p.D130D 0.23 TCGA-BT-A2LB-01 2 38956810 38956810 G A GALM Silent p.K249K 0.27 TCGA-BT-A2LB-01 2 38958959 38958959 G A GALM Missense_Mutation p.D287N 0.32 deleterious(0.04) possibly_damaging(0.47) TCGA-BT-A2LB-01 2 39664039 39664039 G A MAP4K3 Silent p.V30V 0.33 TCGA-BT-A2LB-01 2 47378469 47378469 C T C2orf61 Silent p.K109K 0.30 TCGA-BT-A2LB-01 2 48848387 48848387 C T STON1-GTF2A1L Nonsense_Mutation p.Q773* 0.35 TCGA-BT-A2LB-01 2 50850596 50850596 A G NRXN1 Silent p.Y363Y 0.36 TCGA-BT-A2LB-01 2 54483374 54483374 C T TSPYL6 5'UTR 0.16 TCGA-BT-A2LB-01 2 58468480 58468480 C T FANCL 5'UTR 0.38 TCGA-BT-A2LB-01 2 62067514 62067514 C T FAM161A Missense_Mutation p.E209K 0.13 tolerated(0.15) benign(0.101) TCGA-BT-A2LB-01 2 63283050 63283050 C A OTX1 Missense_Mutation p.P222T 0.35 deleterious(0.01) unknown(0) TCGA-BT-A2LB-01 2 63665056 63665056 C T WDPCP Intron 0.26 TCGA-BT-A2LB-01 2 66664922 66664922 G A MEIS1 Silent p.T22T 0.27 TCGA-BT-A2LB-01 2 67630885 67630885 G A ETAA1 Silent p.V357V 0.47 TCGA-BT-A2LB-01 2 67630955 67630955 G A ETAA1 Missense_Mutation p.D381N 0.38 deleterious(0) probably_damaging(0.946) TCGA-BT-A2LB-01 2 70315790 70315790 C T PCBP1 Silent p.I305I 0.38 TCGA-BT-A2LB-01 2 74757805 74757805 G A HTRA2 Missense_Mutation p.D190N 0.31 tolerated(0.12) benign(0.035) TCGA-BT-A2LB-01 2 77745831 77745831 G T LRRTM4 Silent p.T388T 0.23 TCGA-BT-A2LB-01 2 85629268 85629268 T C CAPG Translation_Start_Site p.M1? 0.53 tolerated_low_confidence(0.1) possibly_damaging(0.633) TCGA-BT-A2LB-01 2 85921471 85921471 G A GNLY 5'UTR 0.37 TCGA-BT-A2LB-01 2 88402598 88402598 G A SMYD1 Missense_Mutation p.E304K 0.33 tolerated(0.14) benign(0.011) TCGA-BT-A2LB-01 2 88751512 88751512 G A FOXI3 RNA 0.33 TCGA-BT-A2LB-01 2 96559469 96559469 G A ANKRD36C Missense_Mutation p.S307F 0.23 deleterious(0) probably_damaging(0.996) TCGA-BT-A2LB-01 3 101405522 101405522 G T RPL24 5'UTR 0.25 TCGA-BT-A2LB-01 3 10420033 10420033 G A ATP2B2 Silent p.G368G 0.41 TCGA-BT-A2LB-01 3 108690187 108690187 A G MORC1 Missense_Mutation p.L847S 0.25 tolerated(0.35) benign(0.005) TCGA-BT-A2LB-01 3 111785291 111785291 C T TMPRSS7 Silent p.L410L 0.12 TCGA-BT-A2LB-01 3 111794272 111794272 T C TMPRSS7 Missense_Mutation p.Y504H 0.11 tolerated(0.61) benign(0.043) TCGA-BT-A2LB-01 3 113003353 113003353 C T BOC Missense_Mutation p.S942L 0.54 tolerated(0.26) benign(0.002) TCGA-BT-A2LB-01 3 121411211 121411211 C T GOLGB1 Missense_Mutation p.E2334K 0.16 benign(0.098) TCGA-BT-A2LB-01 3 121415253 121415253 C T GOLGB1 Missense_Mutation p.E1373K 0.67 benign(0.031) TCGA-BT-A2LB-01 3 12195844 12195844 G A TIMP4 Silent p.L154L 0.31 TCGA-BT-A2LB-01 3 124487931 124487931 G A ITGB5 Missense_Mutation p.S649F 0.74 deleterious(0.04) possibly_damaging(0.691) TCGA-BT-A2LB-01 3 124839572 124839572 C T SLC12A8 Intron 0.79 TCGA-BT-A2LB-01 3 124952081 124952081 G A ZNF148 Nonsense_Mutation p.Q497* 0.71 TCGA-BT-A2LB-01 3 126724992 126724992 C T PLXNA1 Silent p.F656F 0.10 TCGA-BT-A2LB-01 3 126735421 126735421 A G PLXNA1 Missense_Mutation p.I1026V 0.07 tolerated(0.94) benign(0.014) TCGA-BT-A2LB-01 3 128060247 128060247 G A EEFSEC Missense_Mutation p.E320K 0.18 tolerated(0.41) benign(0.003) TCGA-BT-A2LB-01 3 129112028 129112028 C T SNORA7B 3'Flank 0.53 TCGA-BT-A2LB-01 3 130405056 130405056 A G PIK3R4 Silent p.I1158I 0.48 TCGA-BT-A2LB-01 3 132071660 132071660 G A ACPP Missense_Mutation p.E321K 0.31 deleterious(0.02) benign(0.33) TCGA-BT-A2LB-01 3 132319410 132319410 G A ACKR4 Missense_Mutation p.A57T 0.45 deleterious(0.04) benign(0.156) TCGA-BT-A2LB-01 3 133339155 133339155 T G TOPBP1 Missense_Mutation p.Q1072P 0.62 deleterious(0) probably_damaging(0.996) TCGA-BT-A2LB-01 3 13361260 13361260 C T NUP210 Intron 0.28 TCGA-BT-A2LB-01 3 136667120 136667120 C T NCK1 Missense_Mutation p.S320L 0.34 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 3 1445006 1445006 G C CNTN6 Missense_Mutation p.L997F 0.22 tolerated(0.24) possibly_damaging(0.86) TCGA-BT-A2LB-01 3 152880938 152880938 G A RAP2B Silent p.S152S 0.36 TCGA-BT-A2LB-01 3 170584195 170584195 C T RPL22L1 Missense_Mutation p.E115K 0.14 tolerated(0.09) unknown(0) TCGA-BT-A2LB-01 3 170727792 170727792 G C SLC2A2 Missense_Mutation p.H151D 0.34 tolerated(0.18) benign(0.232) TCGA-BT-A2LB-01 3 172365740 172365740 G C NCEH1 Silent p.P133P 0.26 TCGA-BT-A2LB-01 3 179119064 179119064 T C GNB4 Silent p.V320V 0.41 TCGA-BT-A2LB-01 3 180630521 180630521 C T FXR1 Silent p.Y16Y 0.33 TCGA-BT-A2LB-01 3 183209963 183209963 G A KLHL6 Silent p.L540L 0.43 TCGA-BT-A2LB-01 3 183665178 183665178 C T ABCC5 Missense_Mutation p.M1116I 0.40 tolerated(0.06) benign(0.115) TCGA-BT-A2LB-01 3 184033328 184033328 G C EIF4G1 5'UTR 0.27 TCGA-BT-A2LB-01 3 184099561 184099561 C T CHRD Missense_Mutation p.S190L 0.33 tolerated(0.31) benign(0.049) TCGA-BT-A2LB-01 3 184612519 184612519 A G VPS8 Missense_Mutation p.K604E 0.16 deleterious(0.02) benign(0.027) TCGA-BT-A2LB-01 3 193372785 193372785 C T OPA1 Missense_Mutation p.T698I 0.38 deleterious(0.01) benign(0.206) TCGA-BT-A2LB-01 3 19436626 19436626 C T KCNH8 Missense_Mutation p.R334C 0.29 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 3 196159300 196159303 ACAC - UBXN7 5'UTR 0.50 TCGA-BT-A2LB-01 3 3194143 3194143 G C CRBN Missense_Mutation p.P382R 0.36 deleterious(0) probably_damaging(0.985) TCGA-BT-A2LB-01 3 32280541 32280541 G A CMTM8 Missense_Mutation p.S26N 0.42 tolerated(0.08) benign(0.003) TCGA-BT-A2LB-01 3 32612282 32612282 A G DYNC1LI1 5'UTR 0.20 TCGA-BT-A2LB-01 3 33434926 33434926 C T UBP1 Missense_Mutation p.E471K 0.25 deleterious(0) possibly_damaging(0.881) TCGA-BT-A2LB-01 3 33614729 33614729 G A CLASP2 Missense_Mutation p.P867S 0.34 deleterious(0.05) probably_damaging(0.999) TCGA-BT-A2LB-01 3 38157986 38157986 A G DLEC1 Missense_Mutation p.E1300G 0.31 deleterious(0.01) benign(0.373) TCGA-BT-A2LB-01 3 39166997 39166997 G A TTC21A Missense_Mutation p.E464K 0.23 deleterious(0.04) probably_damaging(0.938) TCGA-BT-A2LB-01 3 41831325 41831325 C T ULK4 Missense_Mutation p.R674K 0.33 deleterious(0.03) benign(0.333) TCGA-BT-A2LB-01 3 47883135 47883135 G A DHX30 Missense_Mutation p.D233N 0.35 tolerated(0.97) benign(0.001) TCGA-BT-A2LB-01 3 50012766 50012766 C T RBM6 Missense_Mutation p.A475V 0.25 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 3 50145531 50145531 A G RBM5 Missense_Mutation p.D357G 0.42 tolerated(0.06) benign(0.321) TCGA-BT-A2LB-01 3 50685459 50685459 G A MAPKAPK3 Silent p.Q377Q 0.18 TCGA-BT-A2LB-01 3 52273066 52273066 G A TWF2 5'UTR 0.40 TCGA-BT-A2LB-01 3 52812034 52812034 G T ITIH1 Splice_Site p.X46_splice 0.32 TCGA-BT-A2LB-01 3 57545080 57545080 G A PDE12 Missense_Mutation p.C451Y 0.15 deleterious(0.02) possibly_damaging(0.771) TCGA-BT-A2LB-01 3 65346992 65346992 C T MAGI1 Silent p.E1172E 0.40 TCGA-BT-A2LB-01 3 72799820 72799820 G A SHQ1 Missense_Mutation p.S450F 0.60 tolerated(0.05) possibly_damaging(0.723) TCGA-BT-A2LB-01 3 72897392 72897392 C T SHQ1 Missense_Mutation p.E34K 0.34 deleterious(0.02) benign(0.033) TCGA-BT-A2LB-01 3 74350557 74350557 T C CNTN3 Missense_Mutation p.E696G 0.24 deleterious(0.01) possibly_damaging(0.776) TCGA-BT-A2LB-01 3 74350587 74350587 G T CNTN3 Missense_Mutation p.P686Q 0.19 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 3 96706689 96706689 T C EPHA6 Silent p.S322S 0.29 TCGA-BT-A2LB-01 3 97686358 97686359 - CTGCTT MINA In_Frame_Ins p.E25_A26dup 0.11 TCGA-BT-A2LB-01 3 99536809 99536809 G A CMSS1 5'UTR 0.39 TCGA-BT-A2LB-01 4 100047780 100047780 G A ADH4 Silent p.I361I 0.30 TCGA-BT-A2LB-01 4 101947192 101947192 T C PPP3CA Missense_Mutation p.K466E 0.25 tolerated(0.09) benign(0.027) TCGA-BT-A2LB-01 4 103534637 103534637 C T NFKB1 Missense_Mutation p.T883I 0.12 tolerated(0.12) benign(0.093) TCGA-BT-A2LB-01 4 110737358 110737358 G C GAR1 Missense_Mutation p.R13P 0.32 deleterious_low_confidence(0.04) unknown(0) TCGA-BT-A2LB-01 4 140299923 140299923 G A NAA15 Silent p.L690L 0.30 TCGA-BT-A2LB-01 4 146479159 146479159 G A SMAD1 3'UTR 0.20 TCGA-BT-A2LB-01 4 148605049 148605049 C T PRMT10 Silent p.Q30Q 0.29 TCGA-BT-A2LB-01 4 155305519 155305519 C T DCHS2 Splice_Site p.X78_splice 0.25 TCGA-BT-A2LB-01 4 155487699 155487699 C A FGB Missense_Mutation p.P122Q 0.28 tolerated(0.43) possibly_damaging(0.448) TCGA-BT-A2LB-01 4 159747136 159747136 G A FNIP2 Missense_Mutation p.G59D 0.30 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 4 162697045 162697045 A C FSTL5 Missense_Mutation p.I197M 0.12 deleterious(0.04) benign(0.006) TCGA-BT-A2LB-01 4 164246583 164246583 G C NPY1R Missense_Mutation p.R343G 0.25 tolerated(0.38) benign(0.002) TCGA-BT-A2LB-01 4 165961621 165961621 A G TRIM60 Missense_Mutation p.I133V 0.28 tolerated(0.29) benign(0.022) TCGA-BT-A2LB-01 4 167921549 167921549 G A SPOCK3 Nonsense_Mutation p.Q104* 0.35 TCGA-BT-A2LB-01 4 169013810 169013810 G A ANXA10 5'UTR 0.39 TCGA-BT-A2LB-01 4 169296610 169296610 C T DDX60L Missense_Mutation p.M1517I 0.22 tolerated(0.17) benign(0.005) TCGA-BT-A2LB-01 4 183267957 183267957 A G TENM3 Missense_Mutation p.E129G 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-BT-A2LB-01 4 186168505 186168505 C T SNX25 5'UTR 0.30 TCGA-BT-A2LB-01 4 187628629 187628629 T C FAT1 Missense_Mutation p.T785A 0.23 benign(0.007) TCGA-BT-A2LB-01 4 2664635 2664635 G A FAM193A Missense_Mutation p.D315N 0.28 tolerated(0.24) benign(0.005) TCGA-BT-A2LB-01 4 30724271 30724271 C T PCDH7 Silent p.N409N 0.17 TCGA-BT-A2LB-01 4 38916603 38916603 G C FAM114A1 Missense_Mutation p.R285T 0.40 deleterious(0.03) probably_damaging(0.967) TCGA-BT-A2LB-01 4 40104102 40104102 A C N4BP2 Missense_Mutation p.N213H 0.34 deleterious(0.03) possibly_damaging(0.553) TCGA-BT-A2LB-01 4 6107461 6107461 G A JAKMIP1 Silent p.R121R 0.33 TCGA-BT-A2LB-01 4 69426321 69426321 C T UGT2B17 Missense_Mutation p.M313I 0.25 deleterious(0.04) benign(0.057) TCGA-BT-A2LB-01 4 69796299 69796299 T G UGT2A3 Missense_Mutation p.L423F 0.14 deleterious(0.04) possibly_damaging(0.663) TCGA-BT-A2LB-01 4 69962754 69962754 C T UGT2B7 Silent p.L172L 0.22 TCGA-BT-A2LB-01 4 71265001 71265001 G A PROL1 5'UTR 0.20 TCGA-BT-A2LB-01 4 79430001 79430001 C T FRAS1 Silent p.P3207P 0.24 TCGA-BT-A2LB-01 4 79430151 79430151 C T FRAS1 Silent p.V3257V 0.19 TCGA-BT-A2LB-01 4 8021986 8021986 C T ABLIM2 Missense_Mutation p.D438N 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-BT-A2LB-01 4 86807 86807 G T Z95704.2 RNA 0.17 TCGA-BT-A2LB-01 4 87051 87051 G C Z95704.2 RNA 0.23 TCGA-BT-A2LB-01 4 90034836 90034836 C T TIGD2 Silent p.F237F 0.21 TCGA-BT-A2LB-01 4 96045003 96045003 C T BMPR1B Missense_Mutation p.S161F 0.30 deleterious(0.03) probably_damaging(0.945) TCGA-BT-A2LB-01 5 110091194 110091194 A G SLC25A46 Missense_Mutation p.Q198R 0.31 tolerated(0.06) benign(0.004) TCGA-BT-A2LB-01 5 112154981 112154981 G T APC Nonsense_Mutation p.E418* 0.55 TCGA-BT-A2LB-01 5 134074448 134074448 G A CAMLG Silent p.R46R 0.10 TCGA-BT-A2LB-01 5 134914132 134914132 C A CXCL14 Missense_Mutation p.K66N 0.28 deleterious(0.01) probably_damaging(0.937) TCGA-BT-A2LB-01 5 139938224 139938224 G C APBB3 Silent p.V476V 0.38 TCGA-BT-A2LB-01 5 140237513 140237513 C T PCDHA10 Missense_Mutation p.T627M 0.83 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-BT-A2LB-01 5 140730558 140730558 A G PCDHGB1 Missense_Mutation p.Y244C 0.24 deleterious(0) probably_damaging(0.995) TCGA-BT-A2LB-01 5 141244801 141244801 G A PCDH1 Silent p.N365N 0.16 TCGA-BT-A2LB-01 5 145634557 145634557 C T RBM27 Missense_Mutation p.S499F 0.37 deleterious(0.01) benign(0.161) TCGA-BT-A2LB-01 5 145895361 145895361 G T GPR151 Missense_Mutation p.L106I 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-BT-A2LB-01 5 148743624 148743624 G C PCYOX1L Silent p.V107V 0.16 TCGA-BT-A2LB-01 5 150275006 150275006 G A ZNF300 Missense_Mutation p.H615Y 0.12 deleterious(0) probably_damaging(0.989) TCGA-BT-A2LB-01 5 151784387 151784387 G T NMUR2 Silent p.L96L 0.33 TCGA-BT-A2LB-01 5 156536005 156536005 G A HAVCR2 5'UTR 0.34 TCGA-BT-A2LB-01 5 160033923 160033923 C G ATP10B Missense_Mutation p.L1003F 0.12 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 5 162894721 162894721 G A HMMR Silent p.K80K 0.12 TCGA-BT-A2LB-01 5 168175367 168175367 C T SLIT3 Missense_Mutation p.R737Q 0.36 deleterious(0) probably_damaging(0.919) TCGA-BT-A2LB-01 5 170736467 170736467 C T TLX3 Missense_Mutation p.P33L 0.17 tolerated(0.44) benign(0) TCGA-BT-A2LB-01 5 172386963 172386963 C T RPL26L1 Silent p.I29I 0.27 TCGA-BT-A2LB-01 5 176798587 176798587 G A RGS14 Missense_Mutation p.E499K 0.41 tolerated(0.05) probably_damaging(1) TCGA-BT-A2LB-01 5 176831015 176831015 C T F12 Silent p.K365K 0.20 TCGA-BT-A2LB-01 5 179195951 179195951 A G MAML1 Missense_Mutation p.Y611C 0.39 deleterious(0) possibly_damaging(0.886) TCGA-BT-A2LB-01 5 180660709 180660709 C T TRIM41 Silent p.L413L 0.23 TCGA-BT-A2LB-01 5 38963033 38963033 G C RICTOR Missense_Mutation p.T504R 0.37 tolerated(0.57) benign(0.395) TCGA-BT-A2LB-01 5 5460633 5460633 G A KIAA0947 Missense_Mutation p.D396N 0.40 tolerated(0.22) possibly_damaging(0.72) TCGA-BT-A2LB-01 5 54922436 54922436 G A SLC38A9 Silent p.L524L 0.34 TCGA-BT-A2LB-01 5 70308505 70308505 C A NAIP Nonsense_Mutation p.E80* 0.21 TCGA-BT-A2LB-01 5 74077224 74077224 T C FAM169A 3'UTR 0.63 TCGA-BT-A2LB-01 5 76028967 76028967 G T F2R Missense_Mutation p.S306I 0.45 deleterious(0.02) possibly_damaging(0.836) TCGA-BT-A2LB-01 5 94891054 94891054 G A ARSK Silent p.Q24Q 0.22 TCGA-BT-A2LB-01 5 98195774 98195774 T C CHD1 Splice_Site p.X1476_splice 0.17 TCGA-BT-A2LB-01 5 98232937 98232937 G A CHD1 Nonsense_Mutation p.Q485* 0.26 TCGA-BT-A2LB-01 5 98235320 98235320 G A CHD1 Nonsense_Mutation p.Q317* 0.30 TCGA-BT-A2LB-01 6 106764118 106764118 A G ATG5 5'UTR 0.50 TCGA-BT-A2LB-01 6 117631384 117631384 C A ROS1 Silent p.V2098V 0.53 TCGA-BT-A2LB-01 6 117683996 117683996 T C ROS1 Missense_Mutation p.I1051V 0.52 tolerated(1) benign(0.001) TCGA-BT-A2LB-01 6 126320655 126320655 A G TRMT11 Missense_Mutation p.H192R 0.67 tolerated(0.06) benign(0.03) TCGA-BT-A2LB-01 6 130465682 130465682 G T SAMD3 Missense_Mutation p.Q516K 0.26 tolerated_low_confidence(0.21) benign(0.003) TCGA-BT-A2LB-01 6 131216209 131216209 G C EPB41L2 Silent p.L429L 0.59 TCGA-BT-A2LB-01 6 13206114 13206114 A G PHACTR1 Silent p.K244K 0.48 TCGA-BT-A2LB-01 6 144898326 144898326 G A UTRN Missense_Mutation p.E2461K 0.51 deleterious(0) probably_damaging(0.987) TCGA-BT-A2LB-01 6 150244179 150244179 G A RAET1G 5'UTR 0.50 TCGA-BT-A2LB-01 6 155561805 155561805 A G TIAM2 Missense_Mutation p.I1104V 0.42 deleterious(0.01) possibly_damaging(0.819) TCGA-BT-A2LB-01 6 158565401 158565401 C T SERAC1 Missense_Mutation p.G180D 0.47 deleterious(0) probably_damaging(1) TCGA-BT-A2LB-01 6 170597489 170597489 C T DLL1 Missense_Mutation p.D170N 0.50 deleterious(0.01) possibly_damaging(0.568) TCGA-BT-A2LB-01 6 30569384 30569384 C T PPP1R10 Missense_Mutation p.R922H 0.43 deleterious_low_confidence(0) unknown(0) TCGA-BT-A2LB-01 6 30884903 30884903 G A VARS2 Missense_Mutation p.E289K 0.54 deleterious(0) probably_damaging(0.982) TCGA-BT-A2LB-01 6 31627076 31627076 G C C6orf47 Missense_Mutation p.L217V 0.46 tolerated(0.08) probably_damaging(0.997) TCGA-BT-A2LB-01 6 32632653 32632653 C T HLA-DQB1 Missense_Mutation p.E101K 0.60 deleterious(0.02) benign(0.075) TCGA-BT-A2LB-01 6 32815407 32815407 G A TAP1 Nonsense_Mutation p.Q656* 0.41 TCGA-BT-A2LB-01 6 32908579 32908579 G A HLA-DMB Silent p.I2I 0.33 TCGA-BT-A2LB-01 6 33284074 33284074 T C ZBTB22 Missense_Mutation p.N207S 0.50 deleterious(0) probably_damaging(0.978) TCGA-BT-A2LB-01 6 33371898 33371898 G A KIFC1 Missense_Mutation p.E250K 0.48 tolerated(0.71) benign(0.028) TCGA-BT-A2LB-01 6 36287385 36287385 G A C6orf222 Silent p.I557I 0.36 TCGA-BT-A2LB-01 6 42152504 42152504 A T GUCA1B 3'UTR 0.39 TCGA-BT-A2LB-01 7 100684143 100684143 C T MUC17 Missense_Mutation p.S3149F 0.18 benign(0.32) TCGA-BT-A2LB-01 7 102915919 102915919 C T DPY19L2P2 RNA 0.50 TCGA-BT-A2LB-01 7 107594021 107594021 G A LAMB1 Silent p.F1011F 0.57 TCGA-BT-A2LB-01 7 111541741 111541741 T C DOCK4 Missense_Mutation p.T437A 0.21 tolerated(0.22) benign(0.004) TCGA-BT-A2LB-01 7 121738842 121738842 T C AASS Silent p.V495V 0.14 TCGA-BT-A2LB-01 7 124469317 124469317 C T POT1 Missense_Mutation p.V529M 0.12 deleterious(0) possibly_damaging(0.777) TCGA-BT-A2LB-01 7 127251629 127251629 C T PAX4 Silent p.L283L 0.16 TCGA-BT-A2LB-01 7 131853207 131853207 C T PLXNA4 Missense_Mutation p.R1381H 0.12 deleterious(0.02) probably_damaging(1) TCGA-BT-A2LB-01 7 133622721 133622721 G T EXOC4 Missense_Mutation p.R702L 0.12 tolerated(0.16) benign(0.038) TCGA-BT-A2LB-01 7 134894412 134894412 G A WDR91 Silent p.F73F 0.35 TCGA-BT-A2LB-01 7 151945668 151945668 T C KMT2C Silent p.K617K 0.12 TCGA-BT-A2LB-01 7 21639522 21639522 T A DNAH11 Missense_Mutation p.F929I 0.12 possibly_damaging(0.905) TCGA-BT-A2LB-01 7 2400441 2400441 G A EIF3B Missense_Mutation p.R199Q 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A2LB-01 7 26223328 26223340 TGAATGGGACAGA - NFE2L3 Frame_Shift_Del p.N254Lfs*38 0.22 TCGA-BT-A2LB-01 7 28996568 28996568 G A AC005013.5 5'Flank 0.29 TCGA-BT-A2LB-01 7 30329438 30329438 G A ZNRF2 Intron 0.30 TCGA-BT-A2LB-01 7 31378784 31378784 C A NEUROD6 Missense_Mutation p.K33N 0.28 tolerated(0.23) benign(0) TCGA-BT-A2LB-01 7 37947153 37947153 G - SFRP4 Frame_Shift_Del p.K324Nfs*57 0.27 TCGA-BT-A2LB-01 7 44620691 44620691 C T TMED4 Splice_Site p.X178_splice 0.29 TCGA-BT-A2LB-01 7 44739760 44739760 C T OGDH Silent p.F817F 0.34 TCGA-BT-A2LB-01 7 45928215 45928215 G C IGFBP1 5'UTR 0.33 TCGA-BT-A2LB-01 7 5338755 5338755 G A SLC29A4 Missense_Mutation p.R340K 0.24 tolerated(0.36) benign(0.016) TCGA-BT-A2LB-01 7 5760771 5760771 G A RNF216 Missense_Mutation p.L513F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A2LB-01 7 72277753 72277753 C T TYW1B Missense_Mutation p.C210Y 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-BT-A2LB-01 7 72419728 72419728 G A POM121 3'UTR 0.67 TCGA-BT-A2LB-01 7 72992890 72992890 C T TBL2 5'UTR 0.46 TCGA-BT-A2LB-01 7 73255423 73255423 C T WBSCR27 Missense_Mutation p.G77S 0.28 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LB-01 7 77230076 77230076 G A PTPN12 Missense_Mutation p.M216I 0.10 tolerated(0.19) benign(0.004) TCGA-BT-A2LB-01 7 80301250 80301250 A G CD36 Missense_Mutation p.Y340C 0.19 deleterious(0) probably_damaging(0.951) TCGA-BT-A2LB-01 7 83823856 83823856 A C SEMA3A Missense_Mutation p.L16R 0.24 tolerated(0.06) possibly_damaging(0.481) TCGA-BT-A2LB-01 7 84649547 84649547 A G SEMA3D Splice_Site p.X501_splice 0.18 TCGA-BT-A2LB-01 7 99358539 99358539 C T CYP3A4 Missense_Mutation p.R440K 0.39 deleterious(0) probably_damaging(0.986) TCGA-BT-A2LB-01 7 99359668 99359668 C G CYP3A4 Missense_Mutation p.E417Q 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A2LB-01 7 99473945 99473945 C G OR2AE1 Missense_Mutation p.A238P 0.18 deleterious(0) probably_damaging(0.989) TCGA-BT-A2LB-01 8 101083755 101083755 A G RGS22 Silent p.L146L 0.44 TCGA-BT-A2LB-01 8 113308174 113308174 T C CSMD3 Silent p.G2834G 0.16 TCGA-BT-A2LB-01 8 116616147 116616147 T A TRPS1 Missense_Mutation p.K683N 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BT-A2LB-01 8 124975540 124975540 A C FER1L6 Silent p.A33A 0.15 TCGA-BT-A2LB-01 8 125463982 125463982 G T TRMT12 Missense_Mutation p.V272F 0.12 deleterious(0.03) benign(0.195) TCGA-BT-A2LB-01 8 127569332 127569332 C T FAM84B Silent p.S101S 0.11 TCGA-BT-A2LB-01 8 133816268 133816268 G A PHF20L1 Missense_Mutation p.E238K 0.15 deleterious(0.01) benign(0.347) TCGA-BT-A2LB-01 8 142175310 142175310 C G DENND3 Missense_Mutation p.S412C 0.40 tolerated(0.06) probably_damaging(0.972) TCGA-BT-A2LB-01 8 144641548 144641548 G A GSDMD Missense_Mutation p.E15K 0.36 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LB-01 8 145580113 145580113 G A FBXL6 Silent p.L358L 0.17 TCGA-BT-A2LB-01 8 145583820 145583820 C T SLC52A2 Missense_Mutation p.S223F 0.50 deleterious(0.03) benign(0.006) TCGA-BT-A2LB-01 8 145659460 145659460 G A TONSL Silent p.T1096T 0.61 TCGA-BT-A2LB-01 8 145698738 145698738 C T KIFC2 Missense_Mutation p.R808W 0.29 deleterious_low_confidence(0.02) benign(0.136) TCGA-BT-A2LB-01 8 15621793 15621793 A G TUSC3 3'UTR 0.40 TCGA-BT-A2LB-01 8 17612302 17612302 C T MTUS1 Missense_Mutation p.E339K 0.38 tolerated(0.11) benign(0.045) TCGA-BT-A2LB-01 8 22972236 22972236 C T TNFRSF10C Missense_Mutation p.A78V 0.44 tolerated(0.12) benign(0.194) TCGA-BT-A2LB-01 8 23021470 23021470 G A TNFRSF10D 5'UTR 0.58 TCGA-BT-A2LB-01 8 28413267 28413267 G C FZD3 Missense_Mutation p.E522D 0.20 tolerated(0.12) benign(0.017) TCGA-BT-A2LB-01 8 28827975 28827975 T C HMBOX1 Missense_Mutation p.Y147H 0.10 deleterious(0.01) probably_damaging(0.958) TCGA-BT-A2LB-01 8 32463142 32463142 T C NRG1 Missense_Mutation p.V114A 0.38 tolerated(1) benign(0.008) TCGA-BT-A2LB-01 8 38928862 38928862 A G ADAM9 Missense_Mutation p.K546R 0.45 tolerated(0.08) possibly_damaging(0.895) TCGA-BT-A2LB-01 8 41355114 41355114 C T GOLGA7 Silent p.L66L 0.16 TCGA-BT-A2LB-01 8 43152200 43152200 G A POTEA RNA 0.14 TCGA-BT-A2LB-01 8 53853103 53853103 C T NPBWR1 Silent p.F212F 0.41 TCGA-BT-A2LB-01 8 57228775 57228775 G A SDR16C5 Silent p.L44L 0.12 TCGA-BT-A2LB-01 8 61655515 61655515 T C CHD7 Silent p.F508F 0.15 TCGA-BT-A2LB-01 8 61693742 61693742 A G CHD7 Missense_Mutation p.K617E 0.53 benign(0.292) TCGA-BT-A2LB-01 8 6378704 6378704 G C ANGPT2 Nonsense_Mutation p.S265* 0.18 TCGA-BT-A2LB-01 8 66517678 66517678 G A ARMC1 Silent p.I187I 0.42 TCGA-BT-A2LB-01 8 69104737 69104737 C T PREX2 Silent p.I1527I 0.56 TCGA-BT-A2LB-01 8 72977734 72977734 A T TRPA1 Silent p.A168A 0.12 TCGA-BT-A2LB-01 8 74233221 74233221 G A RDH10 Missense_Mutation p.E227K 0.39 deleterious(0) probably_damaging(0.989) TCGA-BT-A2LB-01 8 87241991 87241991 G A SLC7A13 Silent p.S172S 0.46 TCGA-BT-A2LB-01 8 87442959 87442959 G T WWP1 Nonsense_Mutation p.G456* 0.17 TCGA-BT-A2LB-01 8 94747139 94747139 C G RBM12B Missense_Mutation p.Q500H 0.19 tolerated(0.14) benign(0.143) TCGA-BT-A2LB-01 9 100388271 100388271 G T TSTD2 Silent p.A58A 0.50 TCGA-BT-A2LB-01 9 1057223 1057223 G C DMRT2 Missense_Mutation p.E546Q 0.55 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BT-A2LB-01 9 113205828 113205828 G T SVEP1 Missense_Mutation p.P1546T 0.54 possibly_damaging(0.799) TCGA-BT-A2LB-01 9 115805712 115805712 C A ZFP37 Missense_Mutation p.V396L 0.58 tolerated(0.55) benign(0.034) TCGA-BT-A2LB-01 9 116050456 116050456 G A PRPF4 Missense_Mutation p.D313N 0.41 deleterious(0.04) benign(0.072) TCGA-BT-A2LB-01 9 125391656 125391656 C T OR1B1 Nonsense_Mutation p.W53* 0.55 TCGA-BT-A2LB-01 9 130027210 130027210 G A GARNL3 Silent p.L18L 0.43 TCGA-BT-A2LB-01 9 140093630 140093630 G A TPRN Silent p.L512L 0.57 TCGA-BT-A2LB-01 9 140139108 140139108 A G FAM166A Missense_Mutation p.F245L 0.58 deleterious(0) probably_damaging(0.99) TCGA-BT-A2LB-01 9 140508415 140508415 C T ARRDC1 Intron 0.53 TCGA-BT-A2LB-01 9 15469043 15469043 C A PSIP1 Missense_Mutation p.C373F 0.62 deleterious(0.02) probably_damaging(0.996) TCGA-BT-A2LB-01 9 34623620 34623620 C T ARID3C Missense_Mutation p.E223K 0.47 deleterious(0) possibly_damaging(0.551) TCGA-BT-A2LB-01 9 3828335 3828335 G A GLIS3 Silent p.F910F 0.48 TCGA-BT-A2LB-01 9 5304391 5304391 G A RLN2 Nonsense_Mutation p.Q64* 0.38 TCGA-BT-A2LB-01 9 90501167 90501167 C T SPATA31E1 Nonsense_Mutation p.Q589* 0.48 TCGA-BT-A2LB-01 9 96215019 96215019 C T FAM120AOS 5'UTR 0.50 TCGA-BT-A2LB-01 9 97844946 97844946 G A C9orf3 Silent p.K803K 0.52 TCGA-BT-A2LB-01 X 10535150 10535150 C T MID1 Silent p.L146L 0.60 TCGA-BT-A2LB-01 X 106219839 106219839 C T MORC4 Missense_Mutation p.D378N 0.24 deleterious(0.05) possibly_damaging(0.896) TCGA-BT-A2LB-01 X 107084505 107084505 A G MID2 Missense_Mutation p.N204D 0.37 tolerated(0.18) possibly_damaging(0.596) TCGA-BT-A2LB-01 X 11204418 11204418 T C ARHGAP6 Missense_Mutation p.N404S 0.56 deleterious(0) possibly_damaging(0.841) TCGA-BT-A2LB-01 X 11316858 11316858 T C AMELX Missense_Mutation p.I126T 0.62 tolerated(1) unknown(0) TCGA-BT-A2LB-01 X 117543582 117543582 A G WDR44 Missense_Mutation p.N555S 0.31 tolerated(0.1) benign(0.325) TCGA-BT-A2LB-01 X 117960326 117960326 G A ZCCHC12 Silent p.L373L 0.39 TCGA-BT-A2LB-01 X 128922525 128922525 T C SASH3 Missense_Mutation p.M91T 0.35 tolerated(0.27) benign(0.001) TCGA-BT-A2LB-01 X 148797576 148797576 G A MAGEA11 Missense_Mutation p.E144K 0.26 tolerated(0.16) benign(0.276) TCGA-BT-A2LB-01 X 1505571 1505571 G T SLC25A6 Missense_Mutation p.A274E 0.66 deleterious(0) probably_damaging(0.988) TCGA-BT-A2LB-01 X 16864054 16864054 T A RBBP7 Missense_Mutation p.H413L 0.62 deleterious(0) probably_damaging(0.971) TCGA-BT-A2LB-01 X 2945385 2945385 T C ARSH Silent p.G356G 0.64 TCGA-BT-A2LB-01 X 31284980 31284980 G A DMD Intron 0.58 TCGA-BT-A2LB-01 X 31947824 31947824 G C DMD Silent p.L2267L 0.42 TCGA-BT-A2LB-01 X 35937857 35937857 C T CXorf22 5'UTR 0.62 TCGA-BT-A2LB-01 X 41047370 41047371 - GT USP9X Frame_Shift_Ins 0.39 TCGA-BT-A2LB-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.54 TCGA-BT-A2LB-01 X 46434113 46434113 C T CHST7 Silent p.I249I 0.44 TCGA-BT-A2LB-01 X 48780496 48780496 C T OTUD5 Missense_Mutation p.M557I 0.55 tolerated(0.12) benign(0.004) TCGA-BT-A2LB-01 X 48973498 48973498 C T GPKOW Missense_Mutation p.D267N 0.60 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A2LB-01 X 53268459 53268459 C A IQSEC2 Missense_Mutation p.Q1011H 0.33 deleterious(0.02) benign(0.07) TCGA-BT-A2LB-01 X 54959877 54959877 C T PFKFB1 Missense_Mutation p.E459K 0.63 benign(0.001) TCGA-BT-A2LB-01 X 55028739 55028739 G A APEX2 Silent p.L99L 0.70 TCGA-BT-A2LB-01 X 56591246 56591246 G A UBQLN2 Missense_Mutation p.D314N 0.57 tolerated(0.18) benign(0.195) TCGA-BT-A2LB-01 X 73963126 73963126 C T KIAA2022 Silent p.K422K 0.33 TCGA-BT-A2LB-01 X 75003930 75003930 G A MAGEE2 Silent p.V319V 0.34 TCGA-BT-A2LB-01 X 99854576 99854576 C T TNMD Silent p.G272G 0.26 TCGA-BT-A2LB-01 X 99888412 99888412 A T TSPAN6 Missense_Mutation p.V192E 0.31 deleterious(0) possibly_damaging(0.571) TCGA-BT-A2LD-01 10 128798484 128798484 C G DOCK1 Missense_Mutation p.Q300E 0.08 deleterious(0.02) benign(0.042) TCGA-BT-A2LD-01 10 37520469 37520469 G A ANKRD30A 3'UTR 0.22 TCGA-BT-A2LD-01 11 100211904 100211904 A G CNTN5 Silent p.P999P 0.20 TCGA-BT-A2LD-01 11 119547811 119547811 C T PVRL1 Splice_Site p.X284_splice 0.17 TCGA-BT-A2LD-01 11 18267001 18267001 G C SAA2 Missense_Mutation p.Q98E 0.07 deleterious(0.04) possibly_damaging(0.793) TCGA-BT-A2LD-01 11 92495148 92495148 C T FAT3 Missense_Mutation p.R1266C 0.09 probably_damaging(1) TCGA-BT-A2LD-01 11 92532073 92532073 C T FAT3 Missense_Mutation p.T1965I 0.37 benign(0.099) TCGA-BT-A2LD-01 12 109948159 109948159 G T UBE3B Missense_Mutation p.K584N 0.10 tolerated(0.27) benign(0.005) TCGA-BT-A2LD-01 12 124824693 124824693 G A NCOR2 Missense_Mutation p.A1849V 0.34 possibly_damaging(0.614) TCGA-BT-A2LD-01 12 130185155 130185155 C T TMEM132D Silent p.A56A 0.21 TCGA-BT-A2LD-01 12 49176704 49176704 C T ADCY6 Missense_Mutation p.A172T 0.06 tolerated(0.38) benign(0.001) TCGA-BT-A2LD-01 12 51034594 51034594 G A DIP2B Missense_Mutation p.R87Q 0.35 deleterious(0.03) benign(0.059) TCGA-BT-A2LD-01 12 7970478 7970478 G A SLC2A14 Silent p.C431C 0.08 TCGA-BT-A2LD-01 12 94648979 94648979 G A PLXNC1 Silent p.E998E 0.21 TCGA-BT-A2LD-01 13 113181716 113181716 G A TUBGCP3 Missense_Mutation p.S473L 0.07 deleterious(0) benign(0.097) TCGA-BT-A2LD-01 13 49777357 49777357 G T FNDC3A Missense_Mutation p.M1073I 0.36 tolerated(0.24) benign(0.05) TCGA-BT-A2LD-01 13 92345539 92345539 C A GPC5 Missense_Mutation p.Q142K 0.12 tolerated(1) benign(0.411) TCGA-BT-A2LD-01 14 33015022 33015022 C T AKAP6 Missense_Mutation p.T388I 0.16 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LD-01 14 38061857 38061858 - A FOXA1 Frame_Shift_Ins p.M44Ifs*183 0.16 TCGA-BT-A2LD-01 14 88477734 88477734 C G GPR65 Missense_Mutation p.I181M 0.05 tolerated(0.07) possibly_damaging(0.839) TCGA-BT-A2LD-01 15 41247690 41247690 T C CHAC1 Silent p.Y171Y 0.11 TCGA-BT-A2LD-01 15 45898644 45898644 G A BLOC1S6 Missense_Mutation p.E151K 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-BT-A2LD-01 15 64508801 64508801 G A CSNK1G1 Missense_Mutation p.T135I 0.44 tolerated(0.05) possibly_damaging(0.769) TCGA-BT-A2LD-01 15 65625614 65625614 C T IGDCC3 Silent p.Q321Q 0.08 TCGA-BT-A2LD-01 15 71302263 71302263 A G LRRC49 Missense_Mutation p.T514A 0.14 tolerated(0.1) benign(0.236) TCGA-BT-A2LD-01 16 113739 113739 C T RHBDF1 Missense_Mutation p.R103H 0.11 deleterious(0.05) probably_damaging(0.993) TCGA-BT-A2LD-01 16 12223537 12223537 G A SNX29 Missense_Mutation p.R506Q 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-BT-A2LD-01 16 30116185 30116185 T C GDPD3 3'UTR 0.07 TCGA-BT-A2LD-01 16 30718977 30718977 C T SRCAP Nonsense_Mutation p.R193* 0.20 TCGA-BT-A2LD-01 16 30720939 30720939 C T SRCAP Silent p.L247L 0.24 TCGA-BT-A2LD-01 16 30774850 30774850 C G RNF40 Missense_Mutation p.L138V 0.28 tolerated(0.28) benign(0.018) TCGA-BT-A2LD-01 16 31476598 31476598 C G ARMC5 Intron 0.18 TCGA-BT-A2LD-01 16 66592158 66592158 C T CKLF Silent p.I48I 0.15 TCGA-BT-A2LD-01 16 69385672 69385672 C A TMED6 5'UTR 0.20 TCGA-BT-A2LD-01 16 89774351 89774351 C T VPS9D1 Missense_Mutation p.G605E 0.14 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LD-01 16 9916174 9916174 C G GRIN2A Missense_Mutation p.M705I 0.10 deleterious(0) probably_damaging(0.998) TCGA-BT-A2LD-01 17 38347663 38347663 C T RAPGEFL1 Silent p.H271H 0.37 TCGA-BT-A2LD-01 17 39274427 39274427 G A KRTAP4-11 Silent p.S47S 0.07 TCGA-BT-A2LD-01 17 42030378 42030378 C T PYY Intron 0.08 TCGA-BT-A2LD-01 17 45787879 45787879 G A TBKBP1 Missense_Mutation p.V579M 0.12 deleterious(0.05) unknown(0) TCGA-BT-A2LD-01 17 4850177 4850177 C A PFN1 Intron 0.53 TCGA-BT-A2LD-01 17 4850178 4850178 C A PFN1 Intron 0.50 TCGA-BT-A2LD-01 17 71223344 71223346 CTT - FAM104A In_Frame_Del p.R93del 0.16 TCGA-BT-A2LD-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.61 deleterious(0) probably_damaging(1) TCGA-BT-A2LD-01 17 7917216 7917216 G A GUCY2D Missense_Mutation p.R761Q 0.09 tolerated(0.3) benign(0.011) TCGA-BT-A2LD-01 18 32418763 32418763 C T DTNA Intron 0.06 TCGA-BT-A2LD-01 18 46448082 46448082 C T SMAD7 Missense_Mutation p.R314Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LD-01 18 47812525 47812525 C T CXXC1 Missense_Mutation p.R109H 0.32 tolerated(0.11) possibly_damaging(0.578) TCGA-BT-A2LD-01 18 67365704 67365704 G A DOK6 Silent p.Q158Q 0.27 TCGA-BT-A2LD-01 19 11141426 11141426 C T SMARCA4 Missense_Mutation p.R1135W 0.12 probably_damaging(1) TCGA-BT-A2LD-01 19 17435648 17435648 C T ANO8 Missense_Mutation p.G1070D 0.13 tolerated_low_confidence(0.07) unknown(0) TCGA-BT-A2LD-01 19 35837577 35837577 G A CD22 Missense_Mutation p.D841N 0.35 deleterious(0) possibly_damaging(0.889) TCGA-BT-A2LD-01 19 36896541 36896541 G A ZFP82 Missense_Mutation p.S57L 0.38 tolerated(1) benign(0) TCGA-BT-A2LD-01 19 37037947 37037947 G A ZNF529 Missense_Mutation p.P505S 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-BT-A2LD-01 19 46388156 46388157 - CA IRF2BP1 Frame_Shift_Ins p.A293Wfs*104 0.08 TCGA-BT-A2LD-01 19 47194989 47194989 C T PRKD2 Intron 0.10 TCGA-BT-A2LD-01 19 49497147 49497147 A C RUVBL2 5'UTR 0.19 TCGA-BT-A2LD-01 19 52002805 52002805 G A SIGLEC12 Missense_Mutation p.S325L 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-BT-A2LD-01 19 55098822 55098822 G C LILRA2 3'UTR 0.27 TCGA-BT-A2LD-01 19 57035702 57035702 C T ZNF471 Missense_Mutation p.S89F 0.15 tolerated(0.2) probably_damaging(0.962) TCGA-BT-A2LD-01 19 58290574 58290574 G C ZNF586 Missense_Mutation p.E207Q 0.04 deleterious(0.01) possibly_damaging(0.566) TCGA-BT-A2LD-01 19 58290633 58290633 G C ZNF586 Missense_Mutation p.R226S 0.06 tolerated(0.07) probably_damaging(0.92) TCGA-BT-A2LD-01 1 149943009 149943009 G A OTUD7B Nonsense_Mutation p.Q86* 0.06 TCGA-BT-A2LD-01 1 155154564 155154564 G A TRIM46 Missense_Mutation p.V609I 0.25 tolerated(0.08) probably_damaging(0.99) TCGA-BT-A2LD-01 1 161200969 161200969 C T NR1I3 Missense_Mutation p.R254Q 0.38 deleterious(0) benign(0.366) TCGA-BT-A2LD-01 1 171484973 171484973 A G PRRC2C Silent p.G165G 0.17 TCGA-BT-A2LD-01 1 185953314 185953314 C T HMCN1 Missense_Mutation p.P935L 0.16 benign(0.285) TCGA-BT-A2LD-01 1 210856624 210856624 C T KCNH1 Silent p.%3D 0.06 TCGA-BT-A2LD-01 1 212798487 212798487 C T FAM71A Nonsense_Mutation p.R90* 0.10 TCGA-BT-A2LD-01 1 222713516 222713516 C T HHIPL2 Missense_Mutation p.G429E 0.06 deleterious(0) probably_damaging(1) TCGA-BT-A2LD-01 1 236719149 236719149 C T HEATR1 Missense_Mutation p.A1869T 0.09 tolerated(0.97) benign(0.002) TCGA-BT-A2LD-01 1 237787085 237787085 T G RYR2 Missense_Mutation p.F1979L 0.10 benign(0.021) TCGA-BT-A2LD-01 1 27057789 27057790 - T ARID1A Frame_Shift_Ins p.Y500Lfs*123 0.33 TCGA-BT-A2LD-01 1 53927213 53927213 C A DMRTB1 Missense_Mutation p.H215Q 0.10 tolerated(0.05) possibly_damaging(0.467) TCGA-BT-A2LD-01 1 55060253 55060253 C T ACOT11 Missense_Mutation p.R166W 0.07 tolerated(0.09) possibly_damaging(0.489) TCGA-BT-A2LD-01 1 6585956 6585956 C T NOL9 Silent p.E689E 0.08 TCGA-BT-A2LD-01 20 16359928 16359928 G A KIF16B Missense_Mutation p.R907C 0.07 deleterious_low_confidence(0.03) benign(0.105) TCGA-BT-A2LD-01 20 31021631 31021631 G A ASXL1 Missense_Mutation p.D544N 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-BT-A2LD-01 20 47863986 47863986 C T ZNFX1 Missense_Mutation p.D1859N 0.31 tolerated(0.18) benign(0.006) TCGA-BT-A2LD-01 21 22696785 22696785 C A NCAM2 Silent p.A234A 0.06 TCGA-BT-A2LD-01 22 45130923 45130923 G A PRR5 Missense_Mutation p.R214K 0.10 tolerated(0.98) benign(0.004) TCGA-BT-A2LD-01 2 162820755 162820755 G A SLC4A10 Missense_Mutation p.M991I 0.11 tolerated(0.39) benign(0) TCGA-BT-A2LD-01 2 179408943 179408943 G T TTN Missense_Mutation p.P32005T 0.11 TCGA-BT-A2LD-01 2 179591911 179591911 C T TTN Missense_Mutation p.M6727I 0.06 TCGA-BT-A2LD-01 2 185801399 185801399 G T ZNF804A Missense_Mutation p.V426L 0.14 deleterious(0.01) benign(0.06) TCGA-BT-A2LD-01 2 219514052 219514052 G A ZNF142 Silent p.C193C 0.25 TCGA-BT-A2LD-01 2 241710435 241710435 G A KIF1A Missense_Mutation p.R432C 0.32 deleterious(0.04) possibly_damaging(0.45) TCGA-BT-A2LD-01 2 68882436 68882436 A C PROKR1 Missense_Mutation p.T304P 0.10 deleterious(0.01) possibly_damaging(0.629) TCGA-BT-A2LD-01 2 73492583 73492583 C T FBXO41 Missense_Mutation p.R464H 0.09 tolerated(0.13) possibly_damaging(0.46) TCGA-BT-A2LD-01 2 74687437 74687437 C T WBP1 Missense_Mutation p.R147C 0.18 tolerated(0.22) benign(0) TCGA-BT-A2LD-01 3 101212807 101212807 T C SENP7 Silent p.R32R 0.35 TCGA-BT-A2LD-01 3 119501664 119501664 C A NR1I2 Silent p.P20P 0.10 TCGA-BT-A2LD-01 3 121137298 121137298 G A STXBP5L Missense_Mutation p.R1138H 0.49 deleterious(0) possibly_damaging(0.833) TCGA-BT-A2LD-01 3 124132333 124132333 A G KALRN Missense_Mutation p.D786G 0.10 deleterious(0) benign(0.051) TCGA-BT-A2LD-01 3 128979469 128979469 T C COPG1 Missense_Mutation p.M316T 0.15 tolerated(0.14) benign(0.3) TCGA-BT-A2LD-01 3 14803006 14803006 T G C3orf20 Missense_Mutation p.F793L 0.09 deleterious(0.03) benign(0.035) TCGA-BT-A2LD-01 3 32811403 32811403 G A CNOT10 Missense_Mutation p.E737K 0.10 tolerated(0.06) possibly_damaging(0.701) TCGA-BT-A2LD-01 3 42732383 42732383 G A KLHL40 Missense_Mutation p.R547H 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A2LD-01 3 46415257 46415257 G A CCR5 Silent p.T288T 0.06 TCGA-BT-A2LD-01 3 49412958 49412958 A G RHOA Missense_Mutation p.L22P 0.32 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LD-01 3 51457623 51457623 C T VPRBP Missense_Mutation p.R505Q 0.23 tolerated(0.43) benign(0.003) TCGA-BT-A2LD-01 4 125591960 125591960 T C ANKRD50 Silent p.Q824Q 0.08 TCGA-BT-A2LD-01 4 6473933 6473933 C T PPP2R2C Silent p.R8R 0.11 TCGA-BT-A2LD-01 4 7725484 7725484 G A SORCS2 Missense_Mutation p.V829M 0.09 tolerated(0.11) benign(0.058) TCGA-BT-A2LD-01 5 102502895 102502895 G A PPIP5K2 Missense_Mutation p.G645R 0.12 tolerated(0.09) benign(0.007) TCGA-BT-A2LD-01 5 133914401 133914401 C T JADE2 Silent p.D589D 0.13 TCGA-BT-A2LD-01 5 140242233 140242233 G A AC005609.1 3'UTR 0.08 TCGA-BT-A2LD-01 5 176520735 176520735 G A FGFR4 Missense_Mutation p.R493Q 0.10 tolerated(0.11) benign(0.012) TCGA-BT-A2LD-01 5 35957445 35957445 T C UGT3A1 Missense_Mutation p.H307R 0.09 tolerated(0.12) benign(0.007) TCGA-BT-A2LD-01 5 74069827 74069827 C T NSA2 Silent p.V219V 0.08 TCGA-BT-A2LD-01 6 111688580 111688580 T C REV3L Silent p.K2137K 0.11 TCGA-BT-A2LD-01 6 132031779 132031779 T C CTAGE9 Missense_Mutation p.S127G 0.13 tolerated(0.07) benign(0.373) TCGA-BT-A2LD-01 6 159654483 159654483 G A FNDC1 Missense_Mutation p.R980H 0.33 deleterious_low_confidence(0) unknown(0) TCGA-BT-A2LD-01 6 31702009 31702009 C A CLIC1 Missense_Mutation p.C24F 0.12 deleterious(0) possibly_damaging(0.852) TCGA-BT-A2LD-01 6 32154671 32154671 G A PBX2 Silent p.G344G 0.05 TCGA-BT-A2LD-01 6 86257230 86257230 G T SNX14 Missense_Mutation p.D302E 0.22 tolerated(0.69) benign(0.006) TCGA-BT-A2LD-01 7 100679464 100679464 G C MUC17 Missense_Mutation p.E1589D 0.06 unknown(0) TCGA-BT-A2LD-01 7 123516944 123516944 C T HYAL4 Missense_Mutation p.A394V 0.23 deleterious(0) benign(0.44) TCGA-BT-A2LD-01 7 128452358 128452358 G C CCDC136 Missense_Mutation p.D845H 0.15 deleterious(0) probably_damaging(0.987) TCGA-BT-A2LD-01 7 143792375 143792375 T C OR2A12 Missense_Mutation p.Y59H 0.04 deleterious(0.01) probably_damaging(0.994) TCGA-BT-A2LD-01 7 147600794 147600794 G A CNTNAP2 Missense_Mutation p.D746N 0.19 deleterious(0.02) probably_damaging(0.951) TCGA-BT-A2LD-01 7 150696071 150696071 G A NOS3 Missense_Mutation p.R285H 0.21 deleterious(0) probably_damaging(0.997) TCGA-BT-A2LD-01 7 15652118 15652118 G C MEOX2 Nonsense_Mutation p.S270* 0.05 TCGA-BT-A2LD-01 7 30704745 30704745 G A CRHR2 Nonsense_Mutation p.R189* 0.07 TCGA-BT-A2LD-01 7 66459244 66459244 G A SBDS Silent p.L71L 0.08 TCGA-BT-A2LD-01 7 94917928 94917928 T C PPP1R9A Silent p.S1270S 0.10 TCGA-BT-A2LD-01 8 104394752 104394752 C T CTHRC1 Missense_Mutation p.S219L 0.09 deleterious(0.05) benign(0.059) TCGA-BT-A2LD-01 8 104394804 104394804 C T CTHRC1 Silent p.I236I 0.09 TCGA-BT-A2LD-01 8 113267582 113267582 C A CSMD3 Missense_Mutation p.V3313F 0.21 deleterious(0) possibly_damaging(0.616) TCGA-BT-A2LD-01 8 81582753 81582753 C T ZNF704 Missense_Mutation p.R215Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-BT-A2LD-01 9 104124824 104124824 C T BAAT Silent p.R381R 0.11 TCGA-BT-A2LD-01 9 114176749 114176749 G A KIAA0368 Silent p.I827I 0.16 TCGA-BT-A2LD-01 9 116840418 116840418 C T AMBP Silent p.T24T 0.09 TCGA-BT-A2LD-01 9 78938142 78938142 G A PCSK5 Missense_Mutation p.G1399E 0.15 deleterious(0) probably_damaging(0.994) TCGA-BT-A2LD-01 X 15605982 15605982 C A ACE2 Splice_Site p.X233_splice 0.45 TCGA-BT-A2LD-01 X 21863399 21863399 C T MBTPS2 Missense_Mutation p.S112F 0.11 tolerated(0.1) benign(0.382) TCGA-BT-A2LD-01 X 44833924 44833924 C - KDM6A Frame_Shift_Del p.Q117Rfs*63 0.31 TCGA-BT-A3PH-01 10 103898696 103898696 G A PPRC1 Missense_Mutation p.D184N 0.54 tolerated(0.06) probably_damaging(0.992) TCGA-BT-A3PH-01 10 103899460 103899460 G C PPRC1 Missense_Mutation p.E399Q 0.47 deleterious_low_confidence(0.03) benign(0.26) TCGA-BT-A3PH-01 10 105209754 105209754 G T CALHM2 5'UTR 0.40 TCGA-BT-A3PH-01 10 105768064 105768064 G C SLK Missense_Mutation p.E912Q 0.24 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PH-01 10 108412274 108412274 C T SORCS1 Missense_Mutation p.V781I 0.26 deleterious(0.03) benign(0.422) TCGA-BT-A3PH-01 10 115607068 115607068 G A DCLRE1A Nonsense_Mutation p.Q718* 0.46 TCGA-BT-A3PH-01 10 116045895 116045895 G C VWA2 Missense_Mutation p.E399Q 0.32 tolerated(0.55) benign(0.068) TCGA-BT-A3PH-01 10 117045884 117045884 G A ATRNL1 Missense_Mutation p.E798K 0.33 deleterious(0.01) possibly_damaging(0.888) TCGA-BT-A3PH-01 10 12139993 12139993 C G DHTKD1 Missense_Mutation p.Q557E 0.41 tolerated(0.34) benign(0.017) TCGA-BT-A3PH-01 10 125769650 125769650 G A CHST15 3'UTR 0.04 TCGA-BT-A3PH-01 10 126694375 126694375 C T CTBP2 Intron 0.60 TCGA-BT-A3PH-01 10 127824155 127824155 G A ADAM12 Silent p.L141L 0.33 TCGA-BT-A3PH-01 10 12811675 12811675 G A CAMK1D Missense_Mutation p.E148K 0.47 deleterious(0.03) possibly_damaging(0.75) TCGA-BT-A3PH-01 10 128192934 128192934 G C C10orf90 Missense_Mutation p.Q279E 0.33 tolerated(0.08) benign(0.083) TCGA-BT-A3PH-01 10 129902126 129902126 C G MKI67 Missense_Mutation p.E2660Q 0.53 tolerated(0.41) possibly_damaging(0.647) TCGA-BT-A3PH-01 10 129906114 129906114 C G MKI67 Missense_Mutation p.K1330N 0.48 deleterious(0) probably_damaging(0.986) TCGA-BT-A3PH-01 10 135003134 135003134 G C KNDC1 Missense_Mutation p.E492Q 0.53 tolerated(0.37) possibly_damaging(0.811) TCGA-BT-A3PH-01 10 24834707 24834707 C T KIAA1217 Intron 0.49 TCGA-BT-A3PH-01 10 29710308 29710308 C G PTCHD3P1 RNA 0.49 TCGA-BT-A3PH-01 10 50682233 50682233 G A ERCC6 Missense_Mutation p.S813F 0.45 deleterious(0) benign(0.109) TCGA-BT-A3PH-01 10 50819248 50819248 G A SLC18A3 Silent p.P154P 0.23 TCGA-BT-A3PH-01 10 50955190 50955190 C T OGDHL Missense_Mutation p.R351Q 0.43 deleterious(0.02) benign(0.087) TCGA-BT-A3PH-01 10 55663071 55663071 G C PCDH15 Missense_Mutation p.Q1145E 0.46 tolerated(0.62) benign(0.028) TCGA-BT-A3PH-01 10 71020971 71020971 C G HKDC1 Missense_Mutation p.L765V 0.43 tolerated(0.25) benign(0.154) TCGA-BT-A3PH-01 10 75542839 75542839 G A CHCHD1 Missense_Mutation p.R84Q 0.44 tolerated(0.07) benign(0.316) TCGA-BT-A3PH-01 10 91066854 91066854 C T IFIT2 Nonsense_Mutation p.Q381* 0.64 TCGA-BT-A3PH-01 10 96967005 96967005 G C C10orf129 Missense_Mutation p.K148N 0.56 deleterious(0.04) possibly_damaging(0.658) TCGA-BT-A3PH-01 11 108106537 108106537 G C ATM Missense_Mutation p.E158Q 0.75 deleterious(0.01) probably_damaging(0.992) TCGA-BT-A3PH-01 11 111225125 111225125 G C POU2AF1 Missense_Mutation p.S211C 0.74 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 11 111747287 111747287 G C FDXACB1 Missense_Mutation p.Q204E 0.72 tolerated(0.33) benign(0.08) TCGA-BT-A3PH-01 11 118399332 118399332 C G TTC36 Missense_Mutation p.Q45E 0.82 tolerated(1) benign(0.001) TCGA-BT-A3PH-01 11 134183857 134183857 C T GLB1L3 Silent p.I534I 0.82 TCGA-BT-A3PH-01 11 32610646 32610646 G A EIF3M Missense_Mutation p.G135R 0.29 deleterious(0.04) benign(0.005) TCGA-BT-A3PH-01 11 33763508 33763508 C G FBXO3 Silent p.R454R 0.85 TCGA-BT-A3PH-01 11 4615695 4615695 C G OR52I1 Missense_Mutation p.Q143E 0.84 tolerated(0.71) benign(0.232) TCGA-BT-A3PH-01 11 46916251 46916251 G A LRP4 Missense_Mutation p.H477Y 0.90 tolerated(1) benign(0.006) TCGA-BT-A3PH-01 11 533312 533321 GGGTCCCAGA - HRAS Intron 0.65 TCGA-BT-A3PH-01 11 57256845 57256845 G C SLC43A1 Missense_Mutation p.S405C 0.25 deleterious(0.04) possibly_damaging(0.897) TCGA-BT-A3PH-01 11 57471996 57471996 A G MED19 3'UTR 0.41 TCGA-BT-A3PH-01 11 62159721 62159721 G C ASRGL1 Missense_Mutation p.D298H 0.34 deleterious(0.01) benign(0.246) TCGA-BT-A3PH-01 11 62414897 62414897 G A INTS5 Silent p.L885L 0.30 TCGA-BT-A3PH-01 11 62416485 62416485 G C INTS5 Missense_Mutation p.S356C 0.31 tolerated(0.06) benign(0.072) TCGA-BT-A3PH-01 11 62434355 62434355 G T METTL12 Missense_Mutation p.L185F 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-BT-A3PH-01 11 62434944 62434944 G T METTL12 3'UTR 0.43 TCGA-BT-A3PH-01 11 63997243 63997243 G C NUDT22 Intron 0.26 TCGA-BT-A3PH-01 11 64011466 64011466 G C FKBP2 Missense_Mutation p.E132Q 0.29 deleterious(0) probably_damaging(0.99) TCGA-BT-A3PH-01 11 64054470 64054470 G C GPR137 Missense_Mutation p.E189Q 0.29 deleterious(0.02) benign(0.198) TCGA-BT-A3PH-01 11 64662883 64662883 G T ATG2A Missense_Mutation p.S1820Y 0.39 deleterious(0) probably_damaging(0.989) TCGA-BT-A3PH-01 11 65961019 65961019 C G PACS1 Nonsense_Mutation p.S140* 0.17 TCGA-BT-A3PH-01 11 66360524 66360524 G C CCDC87 5'UTR 0.75 TCGA-BT-A3PH-01 11 67220174 67220174 C T GPR152 Missense_Mutation p.D8N 0.62 tolerated(1) benign(0.001) TCGA-BT-A3PH-01 11 67410132 67410132 G C ACY3 3'UTR 0.21 TCGA-BT-A3PH-01 11 67957499 67957499 C G SUV420H1 Missense_Mutation p.R15S 0.35 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 11 68773385 68773385 C A MRGPRF Silent p.V131V 0.92 TCGA-BT-A3PH-01 11 70265929 70265929 C G CTTN Missense_Mutation p.Q216E 0.79 tolerated(0.13) benign(0.437) TCGA-BT-A3PH-01 11 74109127 74109127 G A PGM2L1 Missense_Mutation p.T27M 0.05 tolerated(0.07) benign(0.084) TCGA-BT-A3PH-01 11 87908415 87908415 G C RAB38 Missense_Mutation p.F46L 0.78 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 11 9455272 9455272 C G IPO7 Missense_Mutation p.F651L 0.91 tolerated(0.1) benign(0.259) TCGA-BT-A3PH-01 12 106461446 106461446 C G NUAK1 Missense_Mutation p.E374Q 0.43 deleterious(0) possibly_damaging(0.791) TCGA-BT-A3PH-01 12 109915147 109915147 G C KCTD10 5'UTR 0.48 TCGA-BT-A3PH-01 12 10999683 10999683 G A PRR4 Silent p.P128P 0.47 TCGA-BT-A3PH-01 12 11138715 11138715 C T TAS2R50 Missense_Mutation p.V249I 0.41 tolerated(0.6) benign(0.003) TCGA-BT-A3PH-01 12 111926344 111926344 G C ATXN2 Missense_Mutation p.Q886E 0.33 probably_damaging(0.983) TCGA-BT-A3PH-01 12 112530905 112530905 G A NAA25 Nonsense_Mutation p.Q32* 0.41 TCGA-BT-A3PH-01 12 114793425 114793425 G C TBX5 Missense_Mutation p.S490C 0.30 deleterious(0) benign(0.417) TCGA-BT-A3PH-01 12 117583954 117583954 C G FBXO21 Missense_Mutation p.E609Q 0.35 tolerated(0.13) possibly_damaging(0.701) TCGA-BT-A3PH-01 12 120575576 120575576 C T GCN1L1 Missense_Mutation p.D2146N 0.51 benign(0.064) TCGA-BT-A3PH-01 12 121426650 121426650 G A HNF1A Missense_Mutation p.R114H 0.42 tolerated(0.25) benign(0.013) TCGA-BT-A3PH-01 12 123798237 123798237 C G SBNO1 Missense_Mutation p.M1050I 0.48 deleterious(0.03) benign(0.399) TCGA-BT-A3PH-01 12 124398990 124398990 C T DNAH10 Silent p.D3371D 0.45 TCGA-BT-A3PH-01 12 12870793 12870793 C G CDKN1B Missense_Mutation p.S7C 0.41 deleterious(0) probably_damaging(0.935) TCGA-BT-A3PH-01 12 12871765 12871765 C G CDKN1B Missense_Mutation p.S161C 0.43 deleterious(0.03) benign(0.002) TCGA-BT-A3PH-01 12 130926567 130926567 C A RIMBP2 Nonsense_Mutation p.E427* 0.45 TCGA-BT-A3PH-01 12 23728769 23728769 C T SOX5 Missense_Mutation p.E390K 0.42 tolerated(0.06) benign(0.019) TCGA-BT-A3PH-01 12 23998926 23998926 C G SOX5 Missense_Mutation p.E158Q 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-BT-A3PH-01 12 4724985 4724985 C T AKAP3 Missense_Mutation p.E828K 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-BT-A3PH-01 12 50029643 50029643 C T PRPF40B Silent p.L431L 0.46 TCGA-BT-A3PH-01 12 50135944 50135944 G A TMBIM6 Missense_Mutation p.E9K 0.32 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-BT-A3PH-01 12 5155043 5155043 G A KCNA5 Missense_Mutation p.R577Q 0.42 deleterious_low_confidence(0.05) benign(0.004) TCGA-BT-A3PH-01 12 52100287 52100287 C T SCN8A Missense_Mutation p.R475W 0.50 tolerated(0.09) benign(0.386) TCGA-BT-A3PH-01 12 53412671 53412671 C A EIF4B Silent p.R81R 0.30 TCGA-BT-A3PH-01 12 56575311 56575311 G C SMARCC2 Missense_Mutation p.S304C 0.39 deleterious(0) possibly_damaging(0.7) TCGA-BT-A3PH-01 12 56996518 56996518 C A BAZ2A Nonsense_Mutation p.E1137* 0.37 TCGA-BT-A3PH-01 12 64472798 64472798 G C SRGAP1 Missense_Mutation p.E409Q 0.48 deleterious(0.01) probably_damaging(0.978) TCGA-BT-A3PH-01 12 77239552 77239552 C T ZDHHC17 Missense_Mutation p.H465Y 0.47 deleterious(0) benign(0.042) TCGA-BT-A3PH-01 12 7942167 7942167 C T NANOG 5'UTR 0.22 TCGA-BT-A3PH-01 12 85285836 85285836 C G SLC6A15 Missense_Mutation p.D22H 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A3PH-01 12 9074235 9074235 C G PHC1 Missense_Mutation p.S115R 0.46 deleterious(0) probably_damaging(0.988) TCGA-BT-A3PH-01 12 9303317 9303317 G A PZP Missense_Mutation p.S1436F 0.45 deleterious(0.05) probably_damaging(0.996) TCGA-BT-A3PH-01 12 96354209 96354209 C T AMDHD1 Silent p.I207I 0.30 TCGA-BT-A3PH-01 12 98849663 98849663 C G SLC9A7P1 RNA 0.39 TCGA-BT-A3PH-01 13 20222578 20222578 G C MPHOSPH8 Missense_Mutation p.R412T 0.33 deleterious_low_confidence(0) benign(0.011) TCGA-BT-A3PH-01 13 30091761 30091761 C G SLC7A1 Missense_Mutation p.E487Q 0.51 tolerated(0.47) benign(0.323) TCGA-BT-A3PH-01 13 37269507 37269507 C T SERTM1 Nonsense_Mutation p.Q98* 0.47 TCGA-BT-A3PH-01 13 39432167 39432167 C G FREM2 Missense_Mutation p.I2404M 0.32 deleterious(0) benign(0.143) TCGA-BT-A3PH-01 13 49050910 49050910 G T RB1 Missense_Mutation p.G865V 0.37 tolerated_low_confidence(0.58) benign(0.011) TCGA-BT-A3PH-01 13 77642919 77642919 G C MYCBP2 Silent p.V3946V 0.51 TCGA-BT-A3PH-01 13 78474013 78474013 C G EDNRB Missense_Mutation p.R482T 0.51 tolerated(0.22) benign(0.343) TCGA-BT-A3PH-01 13 88328479 88328479 C G SLITRK5 Missense_Mutation p.S279C 0.28 deleterious(0.02) possibly_damaging(0.76) TCGA-BT-A3PH-01 14 105409902 105409902 C T AHNAK2 Silent p.T3962T 0.48 TCGA-BT-A3PH-01 14 20876254 20876254 G A TEP1 Silent p.L115L 0.39 TCGA-BT-A3PH-01 14 21559300 21559300 C A ZNF219 Splice_Site p.X522_splice 0.15 TCGA-BT-A3PH-01 14 21822642 21822642 C G SUPT16H Missense_Mutation p.M906I 0.43 deleterious(0.01) possibly_damaging(0.802) TCGA-BT-A3PH-01 14 22386380 22386380 C G TRAV13-2 5'UTR 0.42 TCGA-BT-A3PH-01 14 22783306 22783306 C T TRAV40 Missense_Mutation p.S91L 0.34 deleterious(0.02) possibly_damaging(0.618) TCGA-BT-A3PH-01 14 23847933 23847933 C T CMTM5 Intron 0.36 TCGA-BT-A3PH-01 14 24885464 24885464 C A NYNRIN Silent p.G1503G 0.06 TCGA-BT-A3PH-01 14 25044531 25044531 C G CTSG Missense_Mutation p.R48T 0.44 tolerated(0.48) benign(0.001) TCGA-BT-A3PH-01 14 28734064 28734064 G A BNIP3P1 RNA 0.38 TCGA-BT-A3PH-01 14 35227966 35227966 C G BAZ1A Missense_Mutation p.E1444Q 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-BT-A3PH-01 14 55642131 55642131 C T DLGAP5 Missense_Mutation p.E412K 0.54 tolerated(0.09) benign(0.081) TCGA-BT-A3PH-01 14 57947337 57947337 C T C14orf105 Missense_Mutation p.D211N 0.39 tolerated(0.19) benign(0.045) TCGA-BT-A3PH-01 14 64522742 64522742 C T SYNE2 Silent p.L3275L 0.43 TCGA-BT-A3PH-01 14 64593421 64593421 G C SYNE2 Missense_Mutation p.E4605Q 0.47 benign(0.077) TCGA-BT-A3PH-01 14 72176165 72176165 C G SIPA1L1 Nonsense_Mutation p.S1352* 0.39 TCGA-BT-A3PH-01 14 73727502 73727502 G A PAPLN Missense_Mutation p.G664R 0.53 tolerated(0.26) benign(0.024) TCGA-BT-A3PH-01 14 76427367 76427367 C G TGFB3 Missense_Mutation p.D327H 0.38 deleterious(0.01) probably_damaging(1) TCGA-BT-A3PH-01 14 91123528 91123528 G C TTC7B Missense_Mutation p.S444C 0.39 tolerated(0.06) possibly_damaging(0.503) TCGA-BT-A3PH-01 14 92572949 92572949 C T ATXN3 5'UTR 0.35 TCGA-BT-A3PH-01 15 20644840 20644840 C T HERC2P3 RNA 0.29 TCGA-BT-A3PH-01 15 25981266 25981266 G A ATP10A Missense_Mutation p.T226M 0.34 tolerated(0.12) benign(0.067) TCGA-BT-A3PH-01 15 27772741 27772741 G A GABRG3 Missense_Mutation p.C343Y 0.43 tolerated(1) possibly_damaging(0.697) TCGA-BT-A3PH-01 15 41023291 41023291 G A RAD51 Missense_Mutation p.C313Y 0.44 deleterious(0) probably_damaging(0.967) TCGA-BT-A3PH-01 15 41192994 41192994 G A VPS18 Missense_Mutation p.E660K 0.48 deleterious(0.01) benign(0.405) TCGA-BT-A3PH-01 15 42694989 42694989 C G CAPN3 Intron 0.55 TCGA-BT-A3PH-01 15 48741027 48741027 C T FBN1 Missense_Mutation p.G1870E 0.47 probably_damaging(1) TCGA-BT-A3PH-01 15 52258162 52258162 C T LEO1 Missense_Mutation p.E200K 0.44 tolerated_low_confidence(0.07) benign(0.022) TCGA-BT-A3PH-01 15 63008574 63008574 G C TLN2 Silent p.L893L 0.42 TCGA-BT-A3PH-01 15 73615897 73615897 G A HCN4 Missense_Mutation p.P846L 0.40 deleterious_low_confidence(0.03) unknown(0) TCGA-BT-A3PH-01 15 75498861 75498861 G C C15orf39 Missense_Mutation p.D158H 0.37 deleterious(0) probably_damaging(0.934) TCGA-BT-A3PH-01 15 75641328 75641328 G T NEIL1 Nonsense_Mutation p.E28* 0.32 TCGA-BT-A3PH-01 15 85259297 85259297 G C SEC11A Missense_Mutation p.L4V 0.46 deleterious(0.02) benign(0.001) TCGA-BT-A3PH-01 15 86807733 86807733 C G AGBL1 Missense_Mutation p.S398C 0.27 tolerated(0.07) benign(0.004) TCGA-BT-A3PH-01 15 91341444 91341444 G A BLM Missense_Mutation p.D1079N 0.49 deleterious(0.04) benign(0.05) TCGA-BT-A3PH-01 15 99467847 99467847 C T IGF1R Nonsense_Mutation p.Q906* 0.30 TCGA-BT-A3PH-01 16 1412126 1412126 G A GNPTG Silent p.Q135Q 0.91 TCGA-BT-A3PH-01 16 2110794 2110794 C T TSC2 Missense_Mutation p.R367W 0.85 deleterious(0) probably_damaging(0.981) TCGA-BT-A3PH-01 16 21136611 21136611 G C DNAH3 Nonsense_Mutation p.S430* 0.75 TCGA-BT-A3PH-01 16 21172532 21172532 C G TMEM159 Nonsense_Mutation p.S10* 0.74 TCGA-BT-A3PH-01 16 2205072 2205072 G C TRAF7 5'Flank 0.82 TCGA-BT-A3PH-01 16 2580759 2580759 G A CEMP1 Nonsense_Mutation p.Q106* 0.77 TCGA-BT-A3PH-01 16 2814872 2814872 G C SRRM2 Missense_Mutation p.R1448T 0.80 unknown(0) TCGA-BT-A3PH-01 16 2815072 2815072 G C SRRM2 Missense_Mutation p.E1515Q 0.79 unknown(0) TCGA-BT-A3PH-01 16 28493700 28493700 C G CLN3 Missense_Mutation p.E304Q 0.39 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 16 28948444 28948444 C T CD19 Silent p.S395S 0.31 TCGA-BT-A3PH-01 16 30389259 30389259 C A MYLPF 3'UTR 0.49 TCGA-BT-A3PH-01 16 30777495 30777495 G A RNF40 Silent p.L335L 0.37 TCGA-BT-A3PH-01 16 4016668 4016668 C G ADCY9 Missense_Mutation p.G1057A 0.82 tolerated(1) benign(0.001) TCGA-BT-A3PH-01 16 4556895 4556895 G A HMOX2 Splice_Site p.X29_splice 0.78 TCGA-BT-A3PH-01 16 46764544 46764544 G C MYLK3 Missense_Mutation p.S510C 0.36 deleterious(0) possibly_damaging(0.827) TCGA-BT-A3PH-01 16 56857669 56857669 G A NUP93 Silent p.L235L 0.48 TCGA-BT-A3PH-01 16 56899426 56899426 C G SLC12A3 Silent p.L93L 0.46 TCGA-BT-A3PH-01 16 58549406 58549406 G C SETD6 5'UTR 0.48 TCGA-BT-A3PH-01 16 67195736 67195736 C T FBXL8 Silent p.I16I 0.39 TCGA-BT-A3PH-01 16 67228652 67228652 C G E2F4 Missense_Mutation p.L193V 0.52 deleterious(0.03) benign(0.186) TCGA-BT-A3PH-01 16 67575861 67575861 C G FAM65A Nonsense_Mutation p.S411* 0.38 TCGA-BT-A3PH-01 16 67985897 67985897 C T SLC12A4 Missense_Mutation p.D323N 0.35 tolerated(0.08) benign(0.008) TCGA-BT-A3PH-01 16 68344264 68344264 C G SLC7A6OS Missense_Mutation p.E149Q 0.55 tolerated(0.19) possibly_damaging(0.736) TCGA-BT-A3PH-01 16 68380131 68380131 G C PRMT7 Missense_Mutation p.G380A 0.43 deleterious(0) benign(0.348) TCGA-BT-A3PH-01 16 68721629 68721629 C T CDH3 Silent p.V595V 0.40 TCGA-BT-A3PH-01 16 74761154 74761154 G C FA2H Missense_Mutation p.S165C 0.40 deleterious(0) probably_damaging(0.966) TCGA-BT-A3PH-01 16 75150574 75150574 C G LDHD Missense_Mutation p.W15C 0.38 tolerated_low_confidence(0.11) benign(0.001) TCGA-BT-A3PH-01 16 75690294 75690294 C A TERF2IP Missense_Mutation p.L329I 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A3PH-01 16 81053723 81053723 G C CENPN Missense_Mutation p.E125Q 0.46 tolerated(0.08) benign(0.038) TCGA-BT-A3PH-01 16 81303925 81303925 C G BCMO1 Missense_Mutation p.F335L 0.40 tolerated(0.16) possibly_damaging(0.812) TCGA-BT-A3PH-01 16 87448115 87448115 G A ZCCHC14 Missense_Mutation p.S366L 0.47 tolerated(0.15) benign(0.194) TCGA-BT-A3PH-01 16 87741967 87741967 G A KLHDC4 Missense_Mutation p.A518V 0.39 tolerated_low_confidence(0.2) unknown(0) TCGA-BT-A3PH-01 16 88870299 88870299 C T CDT1 Silent p.I20I 0.38 TCGA-BT-A3PH-01 16 89350394 89350394 G C ANKRD11 Missense_Mutation p.F852L 0.43 probably_damaging(0.977) TCGA-BT-A3PH-01 17 1378124 1378124 G T MYO1C Silent p.L566L 0.86 TCGA-BT-A3PH-01 17 17701534 17701534 G A RAI1 Missense_Mutation p.D1758N 0.92 deleterious(0.01) benign(0.174) TCGA-BT-A3PH-01 17 18188594 18188594 G C TOP3A Missense_Mutation p.S580C 0.84 deleterious(0) probably_damaging(0.992) TCGA-BT-A3PH-01 17 28296332 28296332 G A EFCAB5 Missense_Mutation p.M238I 0.94 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A3PH-01 17 29554250 29554250 C T NF1 Nonsense_Mutation p.Q756* 0.91 TCGA-BT-A3PH-01 17 30323823 30323823 G C SUZ12 Missense_Mutation p.E601Q 0.10 tolerated(0.07) benign(0.204) TCGA-BT-A3PH-01 17 36485624 36485624 C T GPR179 Silent p.S1276S 0.98 TCGA-BT-A3PH-01 17 36486316 36486316 C T GPR179 Missense_Mutation p.E1046K 0.93 tolerated(0.09) benign(0.218) TCGA-BT-A3PH-01 17 36486596 36486596 C T GPR179 Silent p.R952R 0.91 TCGA-BT-A3PH-01 17 36487082 36487082 C T GPR179 Silent p.L790L 0.86 TCGA-BT-A3PH-01 17 41245834 41245834 C T BRCA1 Missense_Mutation p.E572K 0.96 tolerated(0.08) possibly_damaging(0.773) TCGA-BT-A3PH-01 17 42988015 42988015 G A GFAP Missense_Mutation p.P380L 0.15 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 17 56646611 56646611 G C TEX14 Missense_Mutation p.F1322L 0.84 tolerated(0.68) benign(0.001) TCGA-BT-A3PH-01 17 65141996 65141996 C G HELZ Missense_Mutation p.E878Q 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-BT-A3PH-01 17 71197805 71197805 C G COG1 Missense_Mutation p.F613L 0.91 tolerated(0.15) probably_damaging(0.961) TCGA-BT-A3PH-01 17 73262901 73262901 C G MIF4GD Missense_Mutation p.E238Q 0.93 tolerated(0.05) probably_damaging(0.946) TCGA-BT-A3PH-01 17 73949633 73949633 G C ACOX1 Silent p.V281V 0.86 TCGA-BT-A3PH-01 17 74057619 74057619 C G SRP68 Missense_Mutation p.E200Q 0.89 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PH-01 17 74900408 74900408 C T MGAT5B Silent p.L209L 0.95 TCGA-BT-A3PH-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.86 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 17 76167833 76167833 C T SYNGR2 Missense_Mutation p.S164F 0.86 tolerated(0.72) benign(0.003) TCGA-BT-A3PH-01 17 76168061 76168061 C G SYNGR2 3'UTR 0.87 TCGA-BT-A3PH-01 17 76523078 76523078 C T DNAH17 Missense_Mutation p.E1170K 0.87 benign(0.032) TCGA-BT-A3PH-01 17 8092765 8092765 G C C17orf59 Missense_Mutation p.P232A 0.75 tolerated(0.8) benign(0.138) TCGA-BT-A3PH-01 18 21120457 21120457 C G NPC1 Silent p.L853L 0.29 TCGA-BT-A3PH-01 18 21914240 21914240 C T OSBPL1A Missense_Mutation p.R150K 0.37 tolerated(0.17) possibly_damaging(0.507) TCGA-BT-A3PH-01 18 24496276 24496276 C T CHST9 Missense_Mutation p.D427N 0.36 tolerated(0.11) benign(0.143) TCGA-BT-A3PH-01 18 2937747 2937747 C G LPIN2 Missense_Mutation p.E371Q 0.38 tolerated(0.29) benign(0.002) TCGA-BT-A3PH-01 18 30554571 30554571 C T CCDC178 Missense_Mutation p.M821I 0.52 tolerated(0.4) benign(0.181) TCGA-BT-A3PH-01 18 30791874 30791874 G C CCDC178 Missense_Mutation p.L742V 0.39 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 18 3452229 3452229 A G TGIF1 Silent p.P84P 0.59 TCGA-BT-A3PH-01 18 59854615 59854615 C T KIAA1468 5'UTR 0.48 TCGA-BT-A3PH-01 18 60645778 60645778 G T PHLPP1 Missense_Mutation p.S1423I 0.48 deleterious(0.02) possibly_damaging(0.905) TCGA-BT-A3PH-01 18 6961983 6961983 G C LAMA1 Silent p.L2471L 0.45 TCGA-BT-A3PH-01 18 74583695 74583695 G A ZNF236 Missense_Mutation p.R192K 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A3PH-01 18 74692265 74692265 C T RP11-862L9.3 5'Flank 0.42 TCGA-BT-A3PH-01 18 8244134 8244134 G C PTPRM Missense_Mutation p.K793N 0.45 deleterious(0.02) benign(0.011) TCGA-BT-A3PH-01 19 11034009 11034009 G A YIPF2 Silent p.I303I 0.25 TCGA-BT-A3PH-01 19 12060829 12060829 C G ZNF700 Missense_Mutation p.Q664E 0.49 tolerated(0.05) benign(0.227) TCGA-BT-A3PH-01 19 14273746 14273746 C G LPHN1 Missense_Mutation p.Q294H 0.22 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 19 17953847 17953847 C T JAK3 Silent p.L185L 0.60 TCGA-BT-A3PH-01 19 18968269 18968269 G C UPF1 Silent p.R703R 0.57 TCGA-BT-A3PH-01 19 20807249 20807249 C G ZNF626 Missense_Mutation p.E478D 0.27 tolerated(0.05) benign(0.137) TCGA-BT-A3PH-01 19 20807417 20807417 C G ZNF626 Missense_Mutation p.E422D 0.56 deleterious(0.02) probably_damaging(0.96) TCGA-BT-A3PH-01 19 23544674 23544674 C G ZNF91 Missense_Mutation p.K369N 0.23 deleterious(0.03) benign(0.007) TCGA-BT-A3PH-01 19 35251122 35251122 C G ZNF599 Missense_Mutation p.R195T 0.31 tolerated(0.42) benign(0.055) TCGA-BT-A3PH-01 19 35251243 35251243 C T ZNF599 Missense_Mutation p.D155N 0.21 tolerated(0.24) benign(0.001) TCGA-BT-A3PH-01 19 35251274 35251274 C G ZNF599 Missense_Mutation p.E144D 0.22 tolerated(0.05) benign(0.017) TCGA-BT-A3PH-01 19 35502453 35502453 G C GRAMD1A Missense_Mutation p.E201Q 0.28 deleterious(0.01) benign(0.132) TCGA-BT-A3PH-01 19 38161042 38161042 C G ZNF781 Missense_Mutation p.R3T 0.24 deleterious_low_confidence(0) benign(0.227) TCGA-BT-A3PH-01 19 3834946 3834946 C T ZFR2 Missense_Mutation p.G30E 0.72 tolerated(0.34) benign(0.067) TCGA-BT-A3PH-01 19 40929372 40929372 G A SERTAD1 Missense_Mutation p.P28S 0.62 tolerated(0.52) benign(0.002) TCGA-BT-A3PH-01 19 41628036 41628036 G C CYP2F1 Missense_Mutation p.E274Q 0.60 tolerated(1) benign(0.002) TCGA-BT-A3PH-01 19 44156432 44156432 G C PLAUR Missense_Mutation p.F233L 0.27 deleterious(0.02) benign(0.03) TCGA-BT-A3PH-01 19 45164564 45164564 G C PVR Missense_Mutation p.E386Q 0.54 tolerated(0.38) benign(0.072) TCGA-BT-A3PH-01 19 47181774 47181774 C T PRKD2 Silent p.V739V 0.50 TCGA-BT-A3PH-01 19 47204090 47204090 C T PRKD2 Missense_Mutation p.E363K 0.51 tolerated(0.47) benign(0.053) TCGA-BT-A3PH-01 19 47824147 47824147 C G C5AR1 3'UTR 0.62 TCGA-BT-A3PH-01 19 48973714 48973714 G A CTC-273B12.7 Missense_Mutation p.E26K 0.16 tolerated(0.09) benign(0.012) TCGA-BT-A3PH-01 19 49000753 49000753 G A LMTK3 Silent p.L1220L 0.15 TCGA-BT-A3PH-01 19 49300454 49300454 C G BCAT2 Missense_Mutation p.D278H 0.51 tolerated(0.07) benign(0.032) TCGA-BT-A3PH-01 19 49965030 49965030 G A ALDH16A1 Silent p.R244R 0.22 TCGA-BT-A3PH-01 19 49965915 49965915 G A ALDH16A1 Missense_Mutation p.R334Q 0.31 tolerated(0.18) benign(0.023) TCGA-BT-A3PH-01 19 52505446 52505447 - C ZNF615 Frame_Shift_Ins p.D35Gfs*38 0.39 TCGA-BT-A3PH-01 19 52618746 52618746 G A ZNF616 Silent p.V557V 0.59 TCGA-BT-A3PH-01 19 53432634 53432634 G A ZNF321P Missense_Mutation p.S75L 0.53 tolerated(0.55) benign(0.017) TCGA-BT-A3PH-01 19 55645272 55645272 G A TNNT1 Silent p.I258I 0.63 TCGA-BT-A3PH-01 19 55672758 55672758 C A DNAAF3 Missense_Mutation p.R299L 0.27 tolerated(0.31) possibly_damaging(0.499) TCGA-BT-A3PH-01 19 56466732 56466732 C T NLRP8 Silent p.P436P 0.60 TCGA-BT-A3PH-01 19 56895395 56895395 G C ZNF582 Nonsense_Mutation p.S464* 0.18 TCGA-BT-A3PH-01 19 57088680 57088680 C G ZNF470 Missense_Mutation p.Q295E 0.52 deleterious(0.04) probably_damaging(0.988) TCGA-BT-A3PH-01 19 5745940 5745940 C G CATSPERD Nonsense_Mutation p.S225* 0.26 TCGA-BT-A3PH-01 19 59073565 59073565 C T MZF1 Silent p.R693R 0.19 TCGA-BT-A3PH-01 19 8386222 8386222 G A NDUFA7 Silent p.L7L 0.36 TCGA-BT-A3PH-01 19 9067806 9067806 G C MUC16 Missense_Mutation p.S6547C 0.60 unknown(0) TCGA-BT-A3PH-01 19 9071775 9071775 C G MUC16 Missense_Mutation p.S5224T 0.62 unknown(0) TCGA-BT-A3PH-01 1 10342591 10342591 G A KIF1B Silent p.K432K 0.31 TCGA-BT-A3PH-01 1 110591786 110591786 G C STRIP1 Missense_Mutation p.E572Q 0.38 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PH-01 1 110592108 110592108 G A STRIP1 Silent p.V605V 0.41 TCGA-BT-A3PH-01 1 111773857 111773857 C T CHI3L2 Intron 0.42 TCGA-BT-A3PH-01 1 113253221 113253221 C G PPM1J Missense_Mutation p.D411H 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-BT-A3PH-01 1 114523069 114523069 G C OLFML3 Missense_Mutation p.R77T 0.39 tolerated(0.08) possibly_damaging(0.703) TCGA-BT-A3PH-01 1 11708844 11708844 G A FBXO2 Silent p.F266F 0.57 TCGA-BT-A3PH-01 1 117656050 117656050 G A TRIM45 Missense_Mutation p.H509Y 0.53 deleterious(0) probably_damaging(0.937) TCGA-BT-A3PH-01 1 12337497 12337497 C G VPS13D Silent p.L1284L 0.48 TCGA-BT-A3PH-01 1 1341062 1341062 C G MRPL20 Intron 0.30 TCGA-BT-A3PH-01 1 143912363 143912363 G C FAM72D 5'UTR 0.29 TCGA-BT-A3PH-01 1 144882814 144882814 C T PDE4DIP Missense_Mutation p.D1069N 0.20 deleterious(0.01) probably_damaging(0.944) TCGA-BT-A3PH-01 1 144931419 144931419 T C PDE4DIP Intron 0.26 TCGA-BT-A3PH-01 1 145075664 145075664 C A PDE4DIP Nonsense_Mutation p.E67* 0.11 TCGA-BT-A3PH-01 1 145281491 145281491 G A NOTCH2NL Missense_Mutation p.E141K 0.10 tolerated(0.66) benign(0.285) TCGA-BT-A3PH-01 1 145439874 145439874 G C TXNIP Missense_Mutation p.K140N 0.47 deleterious(0) possibly_damaging(0.776) TCGA-BT-A3PH-01 1 145440123 145440123 G A TXNIP Missense_Mutation p.R186K 0.41 deleterious(0) benign(0.441) TCGA-BT-A3PH-01 1 150532597 150532597 C T ADAMTSL4 Silent p.V1050V 0.40 TCGA-BT-A3PH-01 1 150532754 150532754 C G ADAMTSL4 3'UTR 0.60 TCGA-BT-A3PH-01 1 151111130 151111130 G C SEMA6C Missense_Mutation p.F144L 0.40 deleterious(0.01) possibly_damaging(0.458) TCGA-BT-A3PH-01 1 151316209 151316209 G A RFX5 Silent p.L235L 0.37 TCGA-BT-A3PH-01 1 155365333 155365333 C T ASH1L Missense_Mutation p.R2007Q 0.40 tolerated_low_confidence(0.47) benign(0.44) TCGA-BT-A3PH-01 1 156100507 156100507 C G LMNA Silent p.L152L 0.41 TCGA-BT-A3PH-01 1 156230322 156230322 G A SMG5 Missense_Mutation p.R735C 0.42 tolerated(0.15) probably_damaging(0.996) TCGA-BT-A3PH-01 1 156639156 156639156 C G NES Missense_Mutation p.Q1608H 0.33 deleterious(0.01) possibly_damaging(0.789) TCGA-BT-A3PH-01 1 1572548 1572548 C G CDK11B Silent p.L532L 0.06 TCGA-BT-A3PH-01 1 157665209 157665209 G A FCRL3 Silent p.L441L 0.41 TCGA-BT-A3PH-01 1 159169587 159169587 C T CADM3 Silent p.I367I 0.48 TCGA-BT-A3PH-01 1 160262955 160262955 C T COPA Splice_Site p.X950_splice 0.18 TCGA-BT-A3PH-01 1 160681499 160681499 G A CD48 Silent p.L19L 0.37 TCGA-BT-A3PH-01 1 1635767 1635767 C G CDK11A Silent p.L527L 0.24 TCGA-BT-A3PH-01 1 167038281 167038281 G C GPA33 Missense_Mutation p.S98C 0.42 deleterious(0.01) probably_damaging(0.968) TCGA-BT-A3PH-01 1 167408587 167408587 G C CD247 Silent p.L71L 0.35 TCGA-BT-A3PH-01 1 168056841 168056841 C A GPR161 Nonsense_Mutation p.E456* 0.39 TCGA-BT-A3PH-01 1 168165852 168165852 G C TIPRL Missense_Mutation p.R195T 0.43 deleterious(0) probably_damaging(0.975) TCGA-BT-A3PH-01 1 169292506 169292506 G A NME7 Missense_Mutation p.H43Y 0.39 deleterious(0) benign(0.139) TCGA-BT-A3PH-01 1 170967608 170967608 C T MROH9 Intron 0.31 TCGA-BT-A3PH-01 1 183518360 183518360 G T SMG7 Missense_Mutation p.K924N 0.51 deleterious_low_confidence(0.01) benign(0.37) TCGA-BT-A3PH-01 1 183520021 183520021 G A SMG7 Missense_Mutation p.R1044K 0.50 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BT-A3PH-01 1 183920230 183920230 G C COLGALT2 Silent p.L349L 0.39 TCGA-BT-A3PH-01 1 19477120 19477120 C T UBR4 Missense_Mutation p.D2461N 0.50 benign(0.021) TCGA-BT-A3PH-01 1 198262135 198262135 C T NEK7 Missense_Mutation p.S217F 0.44 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PH-01 1 203467966 203467966 G C OPTC Silent p.L176L 0.45 TCGA-BT-A3PH-01 1 206649607 206649607 G T IKBKE Nonsense_Mutation p.E148* 0.41 TCGA-BT-A3PH-01 1 22141309 22141309 C T LDLRAD2 Silent p.F168F 0.45 TCGA-BT-A3PH-01 1 228467882 228467882 C T OBSCN Missense_Mutation p.R2985W 0.44 probably_damaging(1) TCGA-BT-A3PH-01 1 235929543 235929543 C T LYST Missense_Mutation p.R1986Q 0.50 tolerated(0.66) benign(0.007) TCGA-BT-A3PH-01 1 23695890 23695890 C T C1orf213 Missense_Mutation p.R34C 0.41 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-BT-A3PH-01 1 248224664 248224664 G A OR2L3 Missense_Mutation p.M227I 0.37 deleterious(0.05) benign(0.17) TCGA-BT-A3PH-01 1 248309371 248309371 G T OR2M5 Missense_Mutation p.G308C 0.37 tolerated(0.55) benign(0.031) TCGA-BT-A3PH-01 1 25072015 25072015 C T CLIC4 5'UTR 0.44 TCGA-BT-A3PH-01 1 27106492 27106492 G T ARID1A Nonsense_Mutation p.E2035* 0.33 TCGA-BT-A3PH-01 1 27189727 27189727 G A SFN Silent p.Q8Q 0.47 TCGA-BT-A3PH-01 1 31347175 31347175 C T SDC3 Silent p.K377K 0.42 TCGA-BT-A3PH-01 1 33363913 33363913 C G TMEM54 Silent p.L8L 0.46 TCGA-BT-A3PH-01 1 33987087 33987087 C G CSMD2 Missense_Mutation p.G3381R 0.35 deleterious(0) probably_damaging(0.993) TCGA-BT-A3PH-01 1 3511904 3511904 G C MEGF6 Missense_Mutation p.S125W 0.50 tolerated(0.12) probably_damaging(0.927) TCGA-BT-A3PH-01 1 35485180 35485180 G A ZMYM6 Nonsense_Mutation p.Q68* 0.35 TCGA-BT-A3PH-01 1 36211080 36211080 G C CLSPN Missense_Mutation p.L980V 0.41 deleterious(0) probably_damaging(0.991) TCGA-BT-A3PH-01 1 36381126 36381126 G A AGO1 Missense_Mutation p.E671K 0.48 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PH-01 1 38265658 38265658 C T MANEAL Missense_Mutation p.T386M 0.43 deleterious(0.03) benign(0.286) TCGA-BT-A3PH-01 1 44415642 44415642 G T IPO13 Missense_Mutation p.S213I 0.14 deleterious(0.03) benign(0.027) TCGA-BT-A3PH-01 1 45811074 45811074 G C TESK2 Missense_Mutation p.P385R 0.54 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 1 46212053 46212053 C T IPP Missense_Mutation p.D11N 0.31 deleterious_low_confidence(0.03) benign(0.026) TCGA-BT-A3PH-01 1 46751935 46751935 G C LRRC41 Silent p.L198L 0.46 TCGA-BT-A3PH-01 1 60297859 60297859 C T HOOK1 Nonsense_Mutation p.Q83* 0.39 TCGA-BT-A3PH-01 1 79093672 79093672 G C IFI44L Missense_Mutation p.L24F 0.56 tolerated(0.56) probably_damaging(0.999) TCGA-BT-A3PH-01 1 8045140 8045140 G A PARK7 3'UTR 0.52 TCGA-BT-A3PH-01 1 82455344 82455344 C T LPHN2 Intron 0.43 TCGA-BT-A3PH-01 1 87379771 87379771 C G SEP15 Silent p.P5P 0.41 TCGA-BT-A3PH-01 1 90179371 90179371 G A LRRC8C Silent p.L414L 0.43 TCGA-BT-A3PH-01 1 99150470 99150470 C G SNX7 Missense_Mutation p.F70L 0.38 tolerated_low_confidence(0.19) benign(0.045) TCGA-BT-A3PH-01 20 1457856 1457856 C T SIRPB2 Intron 0.61 TCGA-BT-A3PH-01 20 18123337 18123337 C G CSRP2BP Missense_Mutation p.I11M 0.50 tolerated_low_confidence(0.36) unknown(0) TCGA-BT-A3PH-01 20 30956842 30956842 C G ASXL1 Silent p.L56L 0.44 TCGA-BT-A3PH-01 20 33703305 33703305 G A EDEM2 Silent p.L556L 0.40 TCGA-BT-A3PH-01 20 34091303 34091303 G C CEP250 Missense_Mutation p.Q1702H 0.41 benign(0.106) TCGA-BT-A3PH-01 20 35243657 35243657 G C SLA2 Nonsense_Mutation p.S168* 0.32 TCGA-BT-A3PH-01 20 36948673 36948673 G T BPI Missense_Mutation p.M255I 0.45 deleterious(0.02) benign(0.035) TCGA-BT-A3PH-01 20 37356882 37356882 C A SLC32A1 Missense_Mutation p.S393Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PH-01 20 43129838 43129838 C G SERINC3 Missense_Mutation p.D387H 0.41 deleterious(0.03) probably_damaging(0.93) TCGA-BT-A3PH-01 20 44571881 44571881 C T PCIF1 Silent p.I273I 0.41 TCGA-BT-A3PH-01 20 62659061 62659061 C T PRPF6 Silent p.L771L 0.52 TCGA-BT-A3PH-01 21 39580597 39580597 G C DSCR10 RNA 0.42 TCGA-BT-A3PH-01 21 43222884 43222884 C G PRDM15 Missense_Mutation p.Q1343H 0.44 deleterious_low_confidence(0.03) probably_damaging(0.947) TCGA-BT-A3PH-01 21 46057969 46057969 C T KRTAP10-10 Missense_Mutation p.S212F 0.47 deleterious(0.01) probably_damaging(0.921) TCGA-BT-A3PH-01 22 19459219 19459219 G C UFD1L Silent p.L94L 0.33 TCGA-BT-A3PH-01 22 24179997 24179997 G A DERL3 Silent p.L124L 0.38 TCGA-BT-A3PH-01 22 24717865 24717865 G C SPECC1L Missense_Mutation p.G306A 0.34 tolerated(0.1) benign(0.214) TCGA-BT-A3PH-01 22 30780387 30780387 C G RNF215 Missense_Mutation p.D229H 0.38 deleterious(0.02) benign(0.024) TCGA-BT-A3PH-01 22 30803141 30803141 G C SEC14L2 Missense_Mutation p.E78Q 0.49 deleterious(0.03) possibly_damaging(0.524) TCGA-BT-A3PH-01 22 32269279 32269279 C G DEPDC5 Missense_Mutation p.S1166C 0.36 tolerated(0.1) possibly_damaging(0.823) TCGA-BT-A3PH-01 22 40139599 40139599 T A ENTHD1 3'UTR 0.50 TCGA-BT-A3PH-01 22 41489048 41489048 A C EP300 Missense_Mutation p.K14Q 0.44 unknown(0) TCGA-BT-A3PH-01 22 42609617 42609617 C T TCF20 Silent p.Q565Q 0.43 TCGA-BT-A3PH-01 22 50682166 50682166 G C TUBGCP6 Silent p.L241L 0.43 TCGA-BT-A3PH-01 22 50682726 50682726 G A TUBGCP6 Nonsense_Mutation p.Q55* 0.36 TCGA-BT-A3PH-01 2 105472929 105472929 G A POU3F3 Missense_Mutation p.D321N 0.47 deleterious(0.01) probably_damaging(0.981) TCGA-BT-A3PH-01 2 116485505 116485505 A G DPP10 Silent p.L234L 0.49 TCGA-BT-A3PH-01 2 11802148 11802148 C T NTSR2 Silent p.V281V 0.46 TCGA-BT-A3PH-01 2 118577326 118577326 G A DDX18 Missense_Mutation p.E158K 0.26 tolerated(0.22) benign(0.003) TCGA-BT-A3PH-01 2 119750697 119750697 C A MARCO Intron 0.34 TCGA-BT-A3PH-01 2 125555701 125555701 G A CNTNAP5 Silent p.T1006T 0.60 TCGA-BT-A3PH-01 2 128935411 128935411 G C UGGT1 Missense_Mutation p.Q1210H 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-BT-A3PH-01 2 130911411 130911411 G C SMPD4 Nonsense_Mutation p.S625* 0.64 TCGA-BT-A3PH-01 2 135655919 135655919 C T ACMSD Silent p.V286V 0.88 TCGA-BT-A3PH-01 2 136875681 136875681 C A CXCR4 5'Flank 0.73 TCGA-BT-A3PH-01 2 168104227 168104227 G A XIRP2 Missense_Mutation p.D2109N 0.79 benign(0.009) TCGA-BT-A3PH-01 2 175629082 175629082 G T CHRNA1 Nonsense_Mutation p.S14* 0.17 TCGA-BT-A3PH-01 2 179406276 179406276 C G TTN Missense_Mutation p.D32510H 0.79 TCGA-BT-A3PH-01 2 179435914 179435914 C G TTN Missense_Mutation p.R24982T 0.73 TCGA-BT-A3PH-01 2 179701672 179701672 G A CCDC141 Missense_Mutation p.P1425L 0.78 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 2 179701673 179701673 G A CCDC141 Missense_Mutation p.P1425S 0.78 deleterious(0.01) probably_damaging(0.998) TCGA-BT-A3PH-01 2 182430845 182430845 A G CERKL Missense_Mutation p.M206T 0.87 tolerated(1) benign(0) TCGA-BT-A3PH-01 2 190532598 190532598 G C ASNSD1 Missense_Mutation p.E525Q 0.84 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PH-01 2 201718103 201718103 C T CLK1 Missense_Mutation p.D503N 0.75 deleterious(0.02) possibly_damaging(0.527) TCGA-BT-A3PH-01 2 219900268 219900268 C G CCDC108 Missense_Mutation p.G159A 0.74 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 2 233321358 233321358 G C ALPI Missense_Mutation p.E85Q 0.88 deleterious(0) possibly_damaging(0.716) TCGA-BT-A3PH-01 2 236957880 236957880 A G AGAP1 Missense_Mutation p.E690G 0.81 deleterious(0) probably_damaging(0.987) TCGA-BT-A3PH-01 2 26624903 26624903 G T DRC1 Nonsense_Mutation p.E16* 0.41 TCGA-BT-A3PH-01 2 27302012 27302012 C G EMILIN1 Missense_Mutation p.R27G 0.38 possibly_damaging(0.868) TCGA-BT-A3PH-01 2 27360541 27360541 C T C2orf53 Silent p.L219L 0.50 TCGA-BT-A3PH-01 2 27600419 27600419 G T ZNF513 Nonsense_Mutation p.S540* 0.36 TCGA-BT-A3PH-01 2 27876257 27876257 G C SUPT7L 3'UTR 0.50 TCGA-BT-A3PH-01 2 32716581 32716581 C G BIRC6 Missense_Mutation p.L2766V 0.41 probably_damaging(0.984) TCGA-BT-A3PH-01 2 32740370 32740370 G C BIRC6 Missense_Mutation p.D3628H 0.42 probably_damaging(0.917) TCGA-BT-A3PH-01 2 40656481 40656481 C A SLC8A1 Nonsense_Mutation p.E314* 0.40 TCGA-BT-A3PH-01 2 54859746 54859746 G C SPTBN1 Missense_Mutation p.G1203A 0.44 tolerated(1) benign(0.004) TCGA-BT-A3PH-01 2 61175207 61175207 G A PUS10 Silent p.F474F 0.46 TCGA-BT-A3PH-01 2 71360405 71360405 G A MPHOSPH10 Missense_Mutation p.S156N 0.42 tolerated(0.32) benign(0.01) TCGA-BT-A3PH-01 2 71360599 71360599 G C MPHOSPH10 Missense_Mutation p.E221Q 0.53 deleterious(0.01) possibly_damaging(0.903) TCGA-BT-A3PH-01 2 71360641 71360641 G C MPHOSPH10 Missense_Mutation p.D235H 0.47 deleterious(0.04) probably_damaging(0.949) TCGA-BT-A3PH-01 2 71913744 71913744 G C DYSF 3'UTR 0.26 TCGA-BT-A3PH-01 2 74689845 74689845 C T MOGS Silent p.L357L 0.44 TCGA-BT-A3PH-01 2 74757145 74757145 G A HTRA2 Silent p.P4P 0.44 TCGA-BT-A3PH-01 2 74907021 74907021 C T SEMA4F Silent p.F666F 0.41 TCGA-BT-A3PH-01 2 86693893 86693894 - A KDM3A Frame_Shift_Ins p.V472Gfs*22 0.28 TCGA-BT-A3PH-01 2 86707394 86707394 C T KDM3A Silent p.A807A 0.47 TCGA-BT-A3PH-01 2 9583767 9583767 C T CPSF3 Missense_Mutation p.R407C 0.34 deleterious(0) possibly_damaging(0.8) TCGA-BT-A3PH-01 2 98206122 98206122 G A ANKRD36B RNA 0.38 TCGA-BT-A3PH-01 3 100569525 100569525 C G ABI3BP Missense_Mutation p.E427Q 0.32 tolerated(0.1) benign(0.403) TCGA-BT-A3PH-01 3 101304305 101304305 C G PCNP Missense_Mutation p.L102V 0.56 tolerated(0.34) benign(0.007) TCGA-BT-A3PH-01 3 101399989 101399989 C T RPL24 Missense_Mutation p.G155E 0.53 deleterious(0) possibly_damaging(0.849) TCGA-BT-A3PH-01 3 107096817 107096817 C G CCDC54 Missense_Mutation p.S128C 0.49 deleterious(0.03) probably_damaging(0.964) TCGA-BT-A3PH-01 3 107798974 107798974 G A CD47 Silent p.V88V 0.36 TCGA-BT-A3PH-01 3 108163567 108163567 C G MYH15 Missense_Mutation p.E879Q 0.53 deleterious(0.04) possibly_damaging(0.838) TCGA-BT-A3PH-01 3 112642512 112642512 G C CD200R1 3'UTR 0.28 TCGA-BT-A3PH-01 3 118906732 118906732 G A UPK1B Nonsense_Mutation p.W60* 0.31 TCGA-BT-A3PH-01 3 119334856 119334856 C T PLA1A Intron 0.45 TCGA-BT-A3PH-01 3 121179028 121179028 G A POLQ Missense_Mutation p.H2341Y 0.53 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 3 121187223 121187223 G C POLQ Missense_Mutation p.I2258M 0.36 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 3 121822489 121822489 G C CD86 Silent p.L65L 0.50 TCGA-BT-A3PH-01 3 123019119 123019119 G A ADCY5 Silent p.L916L 0.52 TCGA-BT-A3PH-01 3 130287162 130287162 G C COL6A6 Silent p.L705L 0.54 TCGA-BT-A3PH-01 3 142557645 142557645 C G PCOLCE2 Missense_Mutation p.R226T 0.48 deleterious(0) probably_damaging(0.969) TCGA-BT-A3PH-01 3 148596271 148596271 G C CPA3 Missense_Mutation p.D105H 0.57 deleterious(0.01) possibly_damaging(0.861) TCGA-BT-A3PH-01 3 148876575 148876575 G A HPS3 Missense_Mutation p.G605E 0.33 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PH-01 3 15300495 15300495 C G SH3BP5 Missense_Mutation p.K244N 0.41 tolerated(0.14) benign(0.284) TCGA-BT-A3PH-01 3 15301240 15301240 C T SH3BP5 Intron 0.44 TCGA-BT-A3PH-01 3 157154622 157154622 C G PTX3 5'UTR 0.54 TCGA-BT-A3PH-01 3 160253311 160253311 G A KPNA4 Nonsense_Mutation p.Q93* 0.56 TCGA-BT-A3PH-01 3 172061902 172061902 G A FNDC3B Missense_Mutation p.E702K 0.53 tolerated(0.56) benign(0.11) TCGA-BT-A3PH-01 3 178960875 178960875 C T KCNMB3 Silent p.L219L 0.26 TCGA-BT-A3PH-01 3 183898646 183898646 G A AP2M1 Missense_Mutation p.E147K 0.48 tolerated(0.15) possibly_damaging(0.593) TCGA-BT-A3PH-01 3 186953660 186953660 C T MASP1 Missense_Mutation p.A667T 0.47 deleterious(0.05) possibly_damaging(0.875) TCGA-BT-A3PH-01 3 189690804 189690804 C T LEPREL1 Missense_Mutation p.E520K 0.51 tolerated(0.05) benign(0.119) TCGA-BT-A3PH-01 3 195451832 195451832 G A MUC20 Missense_Mutation p.E120K 0.38 tolerated(0.71) possibly_damaging(0.603) TCGA-BT-A3PH-01 3 196199142 196199142 C T RNF168 Missense_Mutation p.E422K 0.44 tolerated(0.41) benign(0.04) TCGA-BT-A3PH-01 3 27761760 27761760 T C EOMES Missense_Mutation p.Y313C 0.45 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 3 37388779 37388779 G C GOLGA4 Missense_Mutation p.E2205Q 0.44 probably_damaging(0.925) TCGA-BT-A3PH-01 3 39226133 39226133 C G XIRP1 Missense_Mutation p.E1602Q 0.51 deleterious(0.03) possibly_damaging(0.69) TCGA-BT-A3PH-01 3 48664109 48664109 C T SLC26A6 Missense_Mutation p.D695N 0.35 deleterious(0) possibly_damaging(0.862) TCGA-BT-A3PH-01 3 49339954 49339954 G A USP4 Missense_Mutation p.P384S 0.61 tolerated(0.52) possibly_damaging(0.826) TCGA-BT-A3PH-01 3 49724610 49724610 C G MST1 Missense_Mutation p.Q193H 0.37 deleterious(0) probably_damaging(0.99) TCGA-BT-A3PH-01 3 52382979 52382979 G C DNAH1 Missense_Mutation p.E728Q 0.42 benign(0.027) TCGA-BT-A3PH-01 3 52561907 52561907 C G NT5DC2 Silent p.L291L 0.32 TCGA-BT-A3PH-01 3 52613209 52613209 C T PBRM1 Missense_Mutation p.E1107K 0.42 tolerated(0.09) possibly_damaging(0.486) TCGA-BT-A3PH-01 3 52643597 52643597 C G PBRM1 Missense_Mutation p.E767Q 0.61 deleterious(0) possibly_damaging(0.607) TCGA-BT-A3PH-01 3 52820325 52820325 C A ITIH1 Missense_Mutation p.F536L 0.67 tolerated(1) benign(0.004) TCGA-BT-A3PH-01 3 66501996 66501996 C T LRIG1 Missense_Mutation p.V118I 0.29 tolerated(0.14) benign(0.001) TCGA-BT-A3PH-01 3 97983819 97983819 C G OR5H6 Missense_Mutation p.L231V 0.39 tolerated(0.09) benign(0.395) TCGA-BT-A3PH-01 4 103832596 103832596 C T SLC9B1 Missense_Mutation p.E310K 0.25 tolerated(0.93) benign(0.006) TCGA-BT-A3PH-01 4 107845202 107845202 C T DKK2 Missense_Mutation p.R230H 0.33 deleterious(0) probably_damaging(0.987) TCGA-BT-A3PH-01 4 108824404 108824404 C T SGMS2 Nonsense_Mutation p.Q197* 0.27 TCGA-BT-A3PH-01 4 115750948 115750948 C G NDST4 Missense_Mutation p.E833Q 0.70 tolerated(0.28) benign(0.152) TCGA-BT-A3PH-01 4 122737544 122737544 G C EXOSC9 Missense_Mutation p.D410H 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-BT-A3PH-01 4 128878746 128878746 C G MFSD8 Missense_Mutation p.E22Q 0.51 tolerated(0.21) benign(0.005) TCGA-BT-A3PH-01 4 156726374 156726374 G C GUCY1B3 Missense_Mutation p.G610A 0.85 tolerated(1) benign(0) TCGA-BT-A3PH-01 4 169204637 169204637 G C DDX60 Nonsense_Mutation p.S561* 0.51 TCGA-BT-A3PH-01 4 170028027 170028027 C G SH3RF1 Missense_Mutation p.L823F 0.55 deleterious(0.05) benign(0.1) TCGA-BT-A3PH-01 4 1918624 1918624 C T WHSC1 Missense_Mutation p.H263Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 4 3208581 3208581 C G HTT Silent p.L1982L 0.50 TCGA-BT-A3PH-01 4 3432571 3432571 G C RGS12 Missense_Mutation p.E1335Q 0.40 deleterious(0.01) benign(0.33) TCGA-BT-A3PH-01 4 517589 517589 G A PIGG Nonsense_Mutation p.W652* 0.64 TCGA-BT-A3PH-01 4 52861441 52861441 C G LRRC66 Missense_Mutation p.E583Q 0.31 deleterious(0.02) possibly_damaging(0.816) TCGA-BT-A3PH-01 4 55161411 55161411 C T PDGFRA Missense_Mutation p.S1081L 0.25 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-BT-A3PH-01 4 56750054 56750054 G C EXOC1 Missense_Mutation p.K430N 0.47 deleterious(0) probably_damaging(0.948) TCGA-BT-A3PH-01 4 5806484 5806484 G A EVC Missense_Mutation p.R826Q 0.57 tolerated(0.25) benign(0.016) TCGA-BT-A3PH-01 4 7065824 7065824 C A GRPEL1 Missense_Mutation p.E63D 0.59 tolerated(0.11) probably_damaging(0.999) TCGA-BT-A3PH-01 4 71588434 71588434 C G RUFY3 Missense_Mutation p.I48M 0.54 deleterious(0.02) probably_damaging(0.972) TCGA-BT-A3PH-01 4 71634327 71634327 G C RUFY3 Silent p.L215L 0.51 TCGA-BT-A3PH-01 4 79400752 79400752 G C FRAS1 Missense_Mutation p.D2775H 0.38 possibly_damaging(0.548) TCGA-BT-A3PH-01 4 84223345 84223345 C T HPSE Missense_Mutation p.R428K 0.32 tolerated(0.21) benign(0.005) TCGA-BT-A3PH-01 4 87797593 87797593 C T RP11-397E7.2 RNA 0.69 TCGA-BT-A3PH-01 4 88902684 88902684 G T SPP1 Missense_Mutation p.D92Y 0.58 deleterious(0) probably_damaging(0.992) TCGA-BT-A3PH-01 4 91230191 91230191 C G CCSER1 Silent p.T252T 0.35 TCGA-BT-A3PH-01 4 95583676 95583676 C T PDLIM5 Silent p.C592C 0.68 TCGA-BT-A3PH-01 4 9987351 9987351 G A SLC2A9 Silent p.L159L 0.21 TCGA-BT-A3PH-01 5 118965403 118965403 C G FAM170A 5'UTR 0.47 TCGA-BT-A3PH-01 5 126147468 126147468 G C LMNB1 Missense_Mutation p.E273Q 0.49 deleterious(0.03) possibly_damaging(0.714) TCGA-BT-A3PH-01 5 132270097 132270097 C A AFF4 Missense_Mutation p.W220C 0.39 tolerated(0.19) probably_damaging(0.996) TCGA-BT-A3PH-01 5 140202695 140202695 C A PCDHA5 Silent p.A445A 0.55 TCGA-BT-A3PH-01 5 140595757 140595757 G A PCDHB13 Missense_Mutation p.V688I 0.35 tolerated_low_confidence(0.15) benign(0.007) TCGA-BT-A3PH-01 5 140800786 140800786 G C PCDHGA11 5'UTR 0.45 TCGA-BT-A3PH-01 5 148719618 148719618 A G AFAP1L1 3'UTR 0.57 TCGA-BT-A3PH-01 5 150934193 150934193 G A FAT2 Silent p.T1225T 0.27 TCGA-BT-A3PH-01 5 154267890 154267890 G T GEMIN5 Silent p.L1469L 0.20 TCGA-BT-A3PH-01 5 16668556 16668556 G A MYO10 Nonsense_Mutation p.Q1969* 0.62 TCGA-BT-A3PH-01 5 167631499 167631499 G A TENM2 Missense_Mutation p.E1233K 0.30 tolerated(0.53) benign(0.146) TCGA-BT-A3PH-01 5 169502984 169502984 G A DOCK2 Missense_Mutation p.E1588K 0.27 tolerated(0.47) benign(0.002) TCGA-BT-A3PH-01 5 170239308 170239308 G C GABRP 3'UTR 0.75 TCGA-BT-A3PH-01 5 172660109 172660109 C T NKX2-5 Silent p.S146S 0.53 TCGA-BT-A3PH-01 5 173316947 173316947 C G CPEB4 Missense_Mutation p.Q71E 0.57 deleterious_low_confidence(0) benign(0.059) TCGA-BT-A3PH-01 5 179143168 179143168 C T CANX Silent p.L262L 0.52 TCGA-BT-A3PH-01 5 38884065 38884065 G A OSMR Silent p.Q185Q 0.68 TCGA-BT-A3PH-01 5 43543211 43543211 G C PAIP1 Missense_Mutation p.S210C 0.54 deleterious(0.01) probably_damaging(0.936) TCGA-BT-A3PH-01 5 53606330 53606330 G T ARL15 5'UTR 0.40 TCGA-BT-A3PH-01 5 56207012 56207012 C G SETD9 Missense_Mutation p.P39A 0.63 tolerated(0.11) benign(0.059) TCGA-BT-A3PH-01 5 64886187 64886187 G C TRIM23 3'UTR 0.33 TCGA-BT-A3PH-01 5 66459046 66459046 C G MAST4 Missense_Mutation p.R1347G 0.21 probably_damaging(1) TCGA-BT-A3PH-01 5 70855922 70855922 C T BDP1 Missense_Mutation p.P2452S 0.57 tolerated(0.41) benign(0.275) TCGA-BT-A3PH-01 5 72188999 72188999 G A TNPO1 Missense_Mutation p.G608R 0.25 deleterious(0) possibly_damaging(0.839) TCGA-BT-A3PH-01 5 7414837 7414837 G T ADCY2 Missense_Mutation p.G121V 0.51 deleterious(0) possibly_damaging(0.881) TCGA-BT-A3PH-01 5 79366148 79366148 G C THBS4 Missense_Mutation p.G456A 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-BT-A3PH-01 5 80150118 80150118 G C MSH3 Missense_Mutation p.E995Q 0.25 deleterious(0.03) possibly_damaging(0.823) TCGA-BT-A3PH-01 5 80422972 80422972 G C RASGRF2 Silent p.G892G 0.23 TCGA-BT-A3PH-01 5 89701566 89701566 C G CETN3 Missense_Mutation p.K68N 0.52 deleterious(0.02) benign(0.033) TCGA-BT-A3PH-01 5 89943435 89943435 G A GPR98 Missense_Mutation p.R1048K 0.29 benign(0) TCGA-BT-A3PH-01 5 89948257 89948257 G A GPR98 Missense_Mutation p.E1171K 0.26 possibly_damaging(0.636) TCGA-BT-A3PH-01 5 9066645 9066645 G C SEMA5A Missense_Mutation p.F729L 0.59 deleterious(0.01) probably_damaging(0.986) TCGA-BT-A3PH-01 6 105825294 105825294 G A PREP Missense_Mutation p.P74L 0.21 deleterious(0) possibly_damaging(0.784) TCGA-BT-A3PH-01 6 110551336 110551336 G C CDC40 3'UTR 0.15 TCGA-BT-A3PH-01 6 114181750 114181750 G C MARCKS Missense_Mutation p.E332Q 0.58 deleterious_low_confidence(0) unknown(0) TCGA-BT-A3PH-01 6 118880088 118880088 G C PLN Missense_Mutation p.E2Q 0.51 deleterious_low_confidence(0.02) benign(0.001) TCGA-BT-A3PH-01 6 12122571 12122571 C T HIVEP1 Missense_Mutation p.S848L 0.26 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 6 12122603 12122603 C T HIVEP1 Missense_Mutation p.H859Y 0.28 deleterious(0.02) probably_damaging(0.938) TCGA-BT-A3PH-01 6 12122781 12122781 C G HIVEP1 Missense_Mutation p.S918C 0.24 deleterious(0) probably_damaging(0.95) TCGA-BT-A3PH-01 6 12123600 12123600 C T HIVEP1 Missense_Mutation p.S1191F 0.15 deleterious(0.02) benign(0.379) TCGA-BT-A3PH-01 6 12123624 12123624 C G HIVEP1 Nonsense_Mutation p.S1199* 0.17 TCGA-BT-A3PH-01 6 12123634 12123634 C T HIVEP1 Silent p.L1202L 0.14 TCGA-BT-A3PH-01 6 128318060 128318060 C A PTPRK Missense_Mutation p.G918V 0.33 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PH-01 6 128841507 128841507 G T PTPRK 5'UTR 0.60 TCGA-BT-A3PH-01 6 13977385 13977385 C G RNF182 Missense_Mutation p.S12C 0.31 tolerated(0.07) benign(0.246) TCGA-BT-A3PH-01 6 143095470 143095470 C T HIVEP2 Missense_Mutation p.E136K 0.53 deleterious(0.04) benign(0.297) TCGA-BT-A3PH-01 6 145051568 145051568 G A UTRN Missense_Mutation p.D2629N 0.31 deleterious(0) benign(0.049) TCGA-BT-A3PH-01 6 150210659 150210659 G C RAET1E Silent p.L149L 0.56 TCGA-BT-A3PH-01 6 157256700 157256700 C G ARID1B Nonsense_Mutation p.S676* 0.24 TCGA-BT-A3PH-01 6 17771434 17771434 G C KIF13A Missense_Mutation p.Q1498E 0.33 tolerated_low_confidence(0.33) benign(0.002) TCGA-BT-A3PH-01 6 25619782 25619782 G A LRRC16A Missense_Mutation p.E1363K 0.58 deleterious_low_confidence(0) possibly_damaging(0.566) TCGA-BT-A3PH-01 6 26637743 26637743 C G ZNF322 Missense_Mutation p.E347Q 0.38 deleterious(0) benign(0.273) TCGA-BT-A3PH-01 6 30514513 30514513 G A GNL1 Silent p.L514L 0.24 TCGA-BT-A3PH-01 6 30672146 30672146 G C MDC1 Missense_Mutation p.S1605C 0.50 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PH-01 6 30673848 30673848 G C MDC1 Missense_Mutation p.L1038V 0.53 deleterious(0.02) possibly_damaging(0.492) TCGA-BT-A3PH-01 6 31660894 31660894 C - ABHD16A Frame_Shift_Del p.G179Vfs*38 0.23 TCGA-BT-A3PH-01 6 31669889 31669889 G A ABHD16A Missense_Mutation p.R51C 0.24 deleterious(0) benign(0.432) TCGA-BT-A3PH-01 6 32046817 32046817 G A RNA5SP206 5'Flank 0.63 TCGA-BT-A3PH-01 6 32977305 32977305 G C HLA-DOA Silent p.L3L 0.29 TCGA-BT-A3PH-01 6 34985275 34985275 G C ANKS1A Silent p.R483R 0.55 TCGA-BT-A3PH-01 6 36020527 36020527 C T MAPK14 Silent p.S56S 0.24 TCGA-BT-A3PH-01 6 36823787 36823787 G A PPIL1 Silent p.A101A 0.48 TCGA-BT-A3PH-01 6 40399707 40399707 G C LRFN2 Silent p.L382L 0.30 TCGA-BT-A3PH-01 6 42689881 42689881 C G PRPH2 Missense_Mutation p.L64F 0.52 deleterious(0.02) probably_damaging(0.991) TCGA-BT-A3PH-01 6 84108173 84108173 G C ME1 Missense_Mutation p.S92C 0.19 deleterious(0.03) benign(0.039) TCGA-BT-A3PH-01 6 90425454 90425454 C G MDN1 Missense_Mutation p.E2260Q 0.21 probably_damaging(1) TCGA-BT-A3PH-01 7 105111175 105111175 G C PUS7 Nonsense_Mutation p.S453* 0.45 TCGA-BT-A3PH-01 7 107689947 107689947 G A LAMB4 Missense_Mutation p.H1316Y 0.36 deleterious(0.01) benign(0.127) TCGA-BT-A3PH-01 7 127014125 127014125 G C ZNF800 Missense_Mutation p.S422C 0.40 tolerated(0.12) benign(0.156) TCGA-BT-A3PH-01 7 138604031 138604031 G C KIAA1549 Missense_Mutation p.S114C 0.49 tolerated(0.09) possibly_damaging(0.778) TCGA-BT-A3PH-01 7 139168067 139168067 C G KLRG2 Missense_Mutation p.E108Q 0.46 deleterious_low_confidence(0) benign(0.056) TCGA-BT-A3PH-01 7 140258011 140258011 C T DENND2A Missense_Mutation p.E631K 0.46 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PH-01 7 148288196 148288196 T A C7orf33 Nonsense_Mutation p.L60* 0.40 TCGA-BT-A3PH-01 7 149153043 149153043 G A ZNF777 Missense_Mutation p.P24L 0.42 deleterious_low_confidence(0.03) benign(0.027) TCGA-BT-A3PH-01 7 149419541 149419541 G A KRBA1 Silent p.R165R 0.23 TCGA-BT-A3PH-01 7 149543237 149543237 C G ZNF862 Intron 0.36 TCGA-BT-A3PH-01 7 150699303 150699303 G A NOS3 Missense_Mutation p.E555K 0.35 tolerated(0.05) possibly_damaging(0.488) TCGA-BT-A3PH-01 7 151877000 151877000 C G KMT2C Missense_Mutation p.R2454T 0.44 probably_damaging(0.998) TCGA-BT-A3PH-01 7 151878836 151878836 C G KMT2C Missense_Mutation p.D2037H 0.41 possibly_damaging(0.738) TCGA-BT-A3PH-01 7 151945114 151945114 G A KMT2C Missense_Mutation p.S802L 0.05 benign(0.309) TCGA-BT-A3PH-01 7 18767220 18767220 G A HDAC9 Silent p.T583T 0.24 TCGA-BT-A3PH-01 7 20766683 20766683 G C ABCB5 Missense_Mutation p.E882D 0.41 tolerated(0.12) benign(0.015) TCGA-BT-A3PH-01 7 23821065 23821065 G C STK31 Missense_Mutation p.E665Q 0.28 tolerated(0.5) benign(0.317) TCGA-BT-A3PH-01 7 26240296 26240296 G A HNRNPA2B1 5'UTR 0.56 TCGA-BT-A3PH-01 7 38860835 38860835 C G VPS41 Missense_Mutation p.E118Q 0.43 deleterious(0.03) benign(0.024) TCGA-BT-A3PH-01 7 44119193 44119193 C G POLM Missense_Mutation p.E207Q 0.37 deleterious(0.03) possibly_damaging(0.613) TCGA-BT-A3PH-01 7 45115443 45115443 G A CCM2 Silent p.V395V 0.47 TCGA-BT-A3PH-01 7 73790516 73790516 G A CLIP2 Silent p.L595L 0.47 TCGA-BT-A3PH-01 7 872165 872165 G C SUN1 Missense_Mutation p.D2H 0.41 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PH-01 7 872210 872210 G C SUN1 Missense_Mutation p.E17Q 0.33 deleterious(0) possibly_damaging(0.628) TCGA-BT-A3PH-01 7 91709233 91709233 G A AKAP9 Missense_Mutation p.E2596K 0.56 benign(0.009) TCGA-BT-A3PH-01 7 92838029 92838029 G A HEPACAM2 Silent p.I292I 0.38 TCGA-BT-A3PH-01 7 92921129 92921129 G A CCDC132 Missense_Mutation p.D353N 0.44 tolerated(0.44) benign(0) TCGA-BT-A3PH-01 7 95039303 95039303 G A PON2 Missense_Mutation p.A202V 0.40 deleterious(0.02) benign(0.281) TCGA-BT-A3PH-01 7 98634777 98634777 G A SMURF1 Silent p.I600I 0.38 TCGA-BT-A3PH-01 8 103323975 103323975 G A UBR5 Silent p.F802F 0.53 TCGA-BT-A3PH-01 8 110492333 110492333 G C PKHD1L1 Missense_Mutation p.E3098Q 0.62 tolerated(0.19) benign(0.003) TCGA-BT-A3PH-01 8 120977541 120977541 C T DEPTOR Silent p.F165F 0.42 TCGA-BT-A3PH-01 8 134239872 134239872 C T WISP1 Silent p.F341F 0.52 TCGA-BT-A3PH-01 8 134266798 134266798 G C NDRG1 Missense_Mutation p.S193C 0.38 tolerated(0.1) probably_damaging(0.987) TCGA-BT-A3PH-01 8 142229062 142229062 C T SLC45A4 Nonsense_Mutation p.W175* 0.50 TCGA-BT-A3PH-01 8 144732634 144732634 C G ZNF623 Missense_Mutation p.Q198E 0.48 deleterious(0.02) benign(0) TCGA-BT-A3PH-01 8 144946756 144946756 G A EPPK1 Silent p.P222P 0.37 TCGA-BT-A3PH-01 8 145134907 145134907 C T EXOSC4 Missense_Mutation p.S78L 0.42 tolerated(0.13) benign(0.004) TCGA-BT-A3PH-01 8 145661307 145661307 C T TONSL Missense_Mutation p.E837K 0.33 deleterious(0.01) possibly_damaging(0.521) TCGA-BT-A3PH-01 8 17813081 17813081 C G PCM1 Missense_Mutation p.S464C 0.39 deleterious(0.03) probably_damaging(0.931) TCGA-BT-A3PH-01 8 61654025 61654025 G A CHD7 Missense_Mutation p.E12K 0.62 benign(0.305) TCGA-BT-A3PH-01 8 73848265 73848265 A G KCNB2 Silent p.G225G 0.45 TCGA-BT-A3PH-01 8 85785626 85785626 G C RALYL Missense_Mutation p.E240Q 0.50 tolerated(0.6) possibly_damaging(0.452) TCGA-BT-A3PH-01 8 95680397 95680397 G C ESRP1 Missense_Mutation p.Q384H 0.47 tolerated(0.09) probably_damaging(0.964) TCGA-BT-A3PH-01 9 100756947 100756947 A T ANP32B Missense_Mutation p.N30I 0.40 tolerated(0.16) benign(0.033) TCGA-BT-A3PH-01 9 107289386 107289386 G A OR13C4 Silent p.Y35Y 0.46 TCGA-BT-A3PH-01 9 123550366 123550366 G C FBXW2 Silent p.L57L 0.41 TCGA-BT-A3PH-01 9 123737147 123737147 C G C5 Missense_Mutation p.L1309F 0.43 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 9 124991004 124991004 C T LHX6 Missense_Mutation p.E6K 0.65 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-BT-A3PH-01 9 125673538 125673538 C G ZBTB6 Missense_Mutation p.D272H 0.35 tolerated(0.17) benign(0.058) TCGA-BT-A3PH-01 9 125673781 125673781 C G ZBTB6 Missense_Mutation p.E191Q 0.49 tolerated(0.65) benign(0.003) TCGA-BT-A3PH-01 9 127689002 127689002 C G GOLGA1 Missense_Mutation p.D140H 0.31 tolerated(0.1) possibly_damaging(0.687) TCGA-BT-A3PH-01 9 127691529 127691529 C T GOLGA1 Silent p.E89E 0.18 TCGA-BT-A3PH-01 9 127691531 127691531 C T GOLGA1 Missense_Mutation p.E89K 0.19 deleterious(0) probably_damaging(0.972) TCGA-BT-A3PH-01 9 131767776 131767776 C T NUP188 Silent p.F1568F 0.38 TCGA-BT-A3PH-01 9 135464731 135464731 C G BARHL1 Missense_Mutation p.S269C 0.46 deleterious(0.02) probably_damaging(0.97) TCGA-BT-A3PH-01 9 135947083 135947083 G A CEL Missense_Mutation p.E735K 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.504) TCGA-BT-A3PH-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.38 deleterious(0) probably_damaging(1) TCGA-BT-A3PH-01 9 139303520 139303520 C G SDCCAG3 Splice_Site p.X74_splice 0.32 TCGA-BT-A3PH-01 9 140003028 140003028 C G MAN1B1 Missense_Mutation p.I695M 0.44 deleterious(0.01) probably_damaging(0.93) TCGA-BT-A3PH-01 9 140003126 140003126 C T MAN1B1 3'UTR 0.50 TCGA-BT-A3PH-01 9 140115104 140115104 G C RNF208 Silent p.P187P 0.27 TCGA-BT-A3PH-01 9 140115581 140115581 G T RNF208 Silent p.L28L 0.42 TCGA-BT-A3PH-01 9 14824958 14824958 G A FREM1 Silent p.D638D 0.43 TCGA-BT-A3PH-01 9 21007098 21007098 G T PTPLAD2 Missense_Mutation p.H213N 0.35 tolerated(0.1) benign(0.016) TCGA-BT-A3PH-01 9 3257090 3257090 C T RFX3 Nonsense_Mutation p.W572* 0.46 TCGA-BT-A3PH-01 9 33927842 33927842 G A UBAP2 Missense_Mutation p.A775V 0.42 tolerated(0.38) unknown(0) TCGA-BT-A3PH-01 9 34976667 34976667 G A KIAA1045 Missense_Mutation p.R260Q 0.41 tolerated(0.07) benign(0.003) TCGA-BT-A3PH-01 9 446486 446486 C G DOCK8 Missense_Mutation p.F1899L 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A3PH-01 9 72962016 72962016 T C SMC5 Missense_Mutation p.I868T 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-BT-A3PH-01 9 77390846 77390846 C A TRPM6 Missense_Mutation p.C1119F 0.34 tolerated(0.26) benign(0.003) TCGA-BT-A3PH-01 9 78796359 78796359 G C PCSK5 Missense_Mutation p.K683N 0.33 deleterious(0) probably_damaging(0.987) TCGA-BT-A3PH-01 9 80912185 80912185 C G PSAT1 Nonsense_Mutation p.S20* 0.46 TCGA-BT-A3PH-01 9 86485462 86485462 C G KIF27 Missense_Mutation p.G910A 0.40 tolerated(0.05) benign(0.066) TCGA-BT-A3PH-01 X 125299171 125299171 C T DCAF12L2 Missense_Mutation p.R246H 1.00 tolerated(0.52) benign(0.009) TCGA-BT-A3PH-01 X 1327784 1327784 G A CRLF2 Nonsense_Mutation p.Q33* 0.81 TCGA-BT-A3PH-01 X 136113144 136113144 C G GPR101 Missense_Mutation p.K230N 0.91 deleterious(0.01) possibly_damaging(0.861) TCGA-BT-A3PH-01 X 13757019 13757019 C G OFD1 Missense_Mutation p.L123V 0.93 deleterious(0.01) possibly_damaging(0.749) TCGA-BT-A3PH-01 X 37664367 37664367 C T CYBB Silent p.L420L 0.88 TCGA-BT-A3PH-01 X 44918318 44918318 G C KDM6A Missense_Mutation p.E315Q 0.83 deleterious(0.04) probably_damaging(0.997) TCGA-BT-A3PH-01 X 44941858 44941858 C G KDM6A Nonsense_Mutation p.S1061* 0.92 TCGA-BT-A3PH-01 X 45010958 45010958 C G CXorf36 Missense_Mutation p.R414T 0.91 deleterious(0) probably_damaging(0.957) TCGA-BT-A3PH-01 X 71350506 71350506 G T RGAG4 Silent p.A295A 0.95 TCGA-BT-A3PJ-01 10 106022765 106022765 G A GSTO1 Missense_Mutation p.R132K 0.44 tolerated(0.94) benign(0.001) TCGA-BT-A3PJ-01 10 108338853 108338853 G A SORCS1 Silent p.L1176L 0.50 TCGA-BT-A3PJ-01 10 113928632 113928632 G C GPAM Silent p.L291L 0.52 TCGA-BT-A3PJ-01 10 113928680 113928680 G A GPAM Silent p.F275F 0.44 TCGA-BT-A3PJ-01 10 116621198 116621198 G A FAM160B1 Missense_Mutation p.D733N 0.50 deleterious(0.05) benign(0.347) TCGA-BT-A3PJ-01 10 116734976 116734976 A T TRUB1 Silent p.T296T 0.50 TCGA-BT-A3PJ-01 10 120892117 120892117 T C FAM45A Missense_Mutation p.I298T 0.69 deleterious(0) possibly_damaging(0.786) TCGA-BT-A3PJ-01 10 123658448 123658448 A G ATE1 Missense_Mutation p.F284L 0.62 deleterious(0) possibly_damaging(0.891) TCGA-BT-A3PJ-01 10 123844550 123844550 C G TACC2 Silent p.L845L 0.61 TCGA-BT-A3PJ-01 10 133757494 133757494 A G PPP2R2D Missense_Mutation p.D136G 0.53 deleterious(0.03) possibly_damaging(0.76) TCGA-BT-A3PJ-01 10 135369290 135369290 G A SYCE1 Missense_Mutation p.A238V 0.63 tolerated(0.07) possibly_damaging(0.801) TCGA-BT-A3PJ-01 10 135439041 135439041 G T FRG2B Missense_Mutation p.H133Q 0.37 tolerated(0.24) benign(0.045) TCGA-BT-A3PJ-01 10 25465209 25465209 C A GPR158 Missense_Mutation p.S287Y 0.55 deleterious(0) benign(0.212) TCGA-BT-A3PJ-01 10 28151397 28151397 C A ARMC4 Missense_Mutation p.G922V 0.50 deleterious(0) probably_damaging(0.988) TCGA-BT-A3PJ-01 10 28409311 28409311 G C MPP7 Missense_Mutation p.I233M 0.45 tolerated(0.6) benign(0.029) TCGA-BT-A3PJ-01 10 28897267 28897267 C T WAC Nonsense_Mutation p.Q358* 0.12 TCGA-BT-A3PJ-01 10 32557940 32557940 G T EPC1 3'UTR 0.08 TCGA-BT-A3PJ-01 10 45430144 45430144 G C TMEM72 Silent p.L130L 0.09 TCGA-BT-A3PJ-01 10 49393605 49393605 G A FRMPD2 Missense_Mutation p.R784C 0.15 deleterious(0.03) probably_damaging(0.958) TCGA-BT-A3PJ-01 10 55826641 55826641 G C PCDH15 Nonsense_Mutation p.S699* 0.06 TCGA-BT-A3PJ-01 10 63852165 63852165 G C ARID5B Silent p.V981V 0.20 TCGA-BT-A3PJ-01 10 63995992 63995992 C A RTKN2 Missense_Mutation p.K173N 0.25 deleterious(0.03) benign(0.33) TCGA-BT-A3PJ-01 10 69597825 69597825 G A DNAJC12 5'UTR 0.48 TCGA-BT-A3PJ-01 10 70645249 70645249 T C STOX1 Missense_Mutation p.I566T 0.16 tolerated(0.61) benign(0.035) TCGA-BT-A3PJ-01 10 70748916 70748916 G A KIAA1279 Missense_Mutation p.E110K 0.45 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PJ-01 10 70883971 70883971 G C VPS26A 5'UTR 0.37 TCGA-BT-A3PJ-01 10 72300935 72300935 C A PALD1 Silent p.L662L 0.47 TCGA-BT-A3PJ-01 10 73581638 73581638 T C PSAP Missense_Mutation p.I302V 0.32 tolerated(1) benign(0.001) TCGA-BT-A3PJ-01 10 75406489 75406493 GCCCC - SYNPO2L Frame_Shift_Del p.G973Rfs*120 0.22 TCGA-BT-A3PJ-01 10 85903844 85903844 G A GHITM Missense_Mutation p.G108E 0.58 deleterious(0) possibly_damaging(0.842) TCGA-BT-A3PJ-01 10 98408463 98408463 C G PIK3AP1 Missense_Mutation p.E380Q 0.50 deleterious(0) probably_damaging(0.996) TCGA-BT-A3PJ-01 10 99160214 99160214 C T RRP12 Missense_Mutation p.E73K 0.50 tolerated(0.34) benign(0.003) TCGA-BT-A3PJ-01 11 107205622 107205622 T A CWF19L2 Missense_Mutation p.K808N 0.13 deleterious(0) probably_damaging(0.948) TCGA-BT-A3PJ-01 11 108357021 108357021 G A KDELC2 Missense_Mutation p.P183S 0.46 tolerated(0.07) possibly_damaging(0.589) TCGA-BT-A3PJ-01 11 110582899 110582899 G AA ARHGAP20 Frame_Shift_Ins p.S19Ffs*36 0.31 TCGA-BT-A3PJ-01 11 113660357 113660357 G A ATF4P4 RNA 0.64 TCGA-BT-A3PJ-01 11 117089803 117089803 G C PCSK7 Silent p.L467L 0.62 TCGA-BT-A3PJ-01 11 117392001 117392001 C T DSCAML1 Missense_Mutation p.E413K 0.54 tolerated(0.3) benign(0.341) TCGA-BT-A3PJ-01 11 118948319 118948319 C T VPS11 Missense_Mutation p.H511Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 11 118965872 118965872 C T H2AFX Missense_Mutation p.R78Q 0.15 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-BT-A3PJ-01 11 119181614 119181614 C T MCAM Splice_Site p.X549_splice 0.16 TCGA-BT-A3PJ-01 11 119182861 119182861 C T MCAM Silent p.V348V 0.13 TCGA-BT-A3PJ-01 11 119183625 119183625 C G MCAM Silent p.S198S 0.15 TCGA-BT-A3PJ-01 11 123893892 123893892 A G OR10G9 Missense_Mutation p.Y58C 0.10 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 11 124489817 124489817 G C PANX3 Missense_Mutation p.D389H 0.42 deleterious(0.04) possibly_damaging(0.473) TCGA-BT-A3PJ-01 11 125280125 125280125 G C PKNOX2 Missense_Mutation p.G208R 0.33 tolerated(0.16) benign(0.112) TCGA-BT-A3PJ-01 11 134010623 134010623 G A JAM3 Missense_Mutation p.D72N 0.10 tolerated(0.9) benign(0.009) TCGA-BT-A3PJ-01 11 134238561 134238561 A G GLB1L2 Missense_Mutation p.I305V 0.13 tolerated(0.18) benign(0.192) TCGA-BT-A3PJ-01 11 14665990 14665990 C T PDE3B Silent p.F123F 0.49 TCGA-BT-A3PJ-01 11 19256466 19256466 C T E2F8 Silent p.G197G 0.15 TCGA-BT-A3PJ-01 11 2432685 2432685 C G TRPM5 Silent p.A893A 0.58 TCGA-BT-A3PJ-01 11 47350217 47350217 A G MADD Missense_Mutation p.I1601V 0.22 deleterious(0.03) benign(0.028) TCGA-BT-A3PJ-01 11 56510978 56510978 C T OR9G4 Missense_Mutation p.D104N 0.43 tolerated(0.41) possibly_damaging(0.786) TCGA-BT-A3PJ-01 11 57509698 57509698 G T C11orf31 3'UTR 0.38 TCGA-BT-A3PJ-01 11 59578113 59578113 G A MRPL16 Missense_Mutation p.R7C 0.35 deleterious_low_confidence(0) benign(0.333) TCGA-BT-A3PJ-01 11 60070049 60070049 A G MS4A4A Silent p.G135G 0.16 TCGA-BT-A3PJ-01 11 61570834 61570834 C T FADS1 Splice_Site p.X416_splice 0.28 TCGA-BT-A3PJ-01 11 61580784 61580784 C T FADS1 Silent p.K139K 0.40 TCGA-BT-A3PJ-01 11 62186541 62186541 C T SCGB1A1 5'UTR 0.29 TCGA-BT-A3PJ-01 11 62376050 62376050 G A EML3 Silent p.F358F 0.12 TCGA-BT-A3PJ-01 11 62554200 62554200 C T TAF6L Missense_Mutation p.S434L 0.36 tolerated_low_confidence(0.15) benign(0.036) TCGA-BT-A3PJ-01 11 62760793 62760793 C G SLC22A8 Missense_Mutation p.K515N 0.27 deleterious(0.03) possibly_damaging(0.632) TCGA-BT-A3PJ-01 11 63666130 63666130 G A MARK2 Missense_Mutation p.E130K 0.27 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 11 64030227 64030227 C T PLCB3 Nonsense_Mutation p.Q768* 0.43 TCGA-BT-A3PJ-01 11 64132770 64132770 C T RPS6KA4 Intron 0.30 TCGA-BT-A3PJ-01 11 64972254 64972254 C G CAPN1 Silent p.A422A 0.31 TCGA-BT-A3PJ-01 11 65267689 65267689 G C MALAT1 RNA 0.19 TCGA-BT-A3PJ-01 11 65363055 65363055 C A KCNK7 Silent p.L63L 0.50 TCGA-BT-A3PJ-01 11 66134033 66134033 C T SLC29A2 Missense_Mutation p.E246K 0.27 tolerated(0.22) benign(0.02) TCGA-BT-A3PJ-01 11 66360138 66360138 C T CCDC87 Missense_Mutation p.E117K 0.37 tolerated(0.18) benign(0.445) TCGA-BT-A3PJ-01 11 6816047 6816047 C T OR6A2 Missense_Mutation p.R298H 0.29 deleterious(0) benign(0.028) TCGA-BT-A3PJ-01 11 71949115 71949115 C T INPPL1 Silent p.S1194S 0.16 TCGA-BT-A3PJ-01 11 73066682 73066682 C G ARHGEF17 Silent p.L1186L 0.28 TCGA-BT-A3PJ-01 11 76903243 76903243 T A MYO7A Missense_Mutation p.S1358T 0.42 tolerated(0.79) benign(0.001) TCGA-BT-A3PJ-01 11 85456690 85456690 C T SYTL2 Missense_Mutation p.A127T 0.29 tolerated(0.54) benign(0.003) TCGA-BT-A3PJ-01 11 88911234 88911234 C T TYR Missense_Mutation p.P38L 0.49 tolerated(0.47) benign(0.002) TCGA-BT-A3PJ-01 11 8947368 8947368 G C C11orf16 Silent p.L282L 0.51 TCGA-BT-A3PJ-01 11 94134384 94134384 G T GPR83 Silent p.L10L 0.29 TCGA-BT-A3PJ-01 11 9435902 9435902 G A IPO7 Missense_Mutation p.D194N 0.50 tolerated(0.38) benign(0.003) TCGA-BT-A3PJ-01 11 94759441 94759441 G C KDM4E Silent p.R240R 0.45 TCGA-BT-A3PJ-01 12 10464093 10464102 GGGTTGGGTA C KLRD1 In_Frame_Del p.W65_Y68delinsS 0.25 TCGA-BT-A3PJ-01 12 105151459 105151459 G A CHST11 Missense_Mutation p.E313K 0.27 tolerated(0.26) benign(0.026) TCGA-BT-A3PJ-01 12 109719382 109719382 G C FOXN4 Missense_Mutation p.S375C 0.30 deleterious(0) probably_damaging(0.982) TCGA-BT-A3PJ-01 12 109940905 109940905 T A UBE3B Missense_Mutation p.S454T 0.18 tolerated(0.12) benign(0.067) TCGA-BT-A3PJ-01 12 112087755 112087755 G A BRAP Missense_Mutation p.S468F 0.06 deleterious(0.04) benign(0.004) TCGA-BT-A3PJ-01 12 119583320 119583320 C T SRRM4 Silent p.A302A 0.15 TCGA-BT-A3PJ-01 12 120947870 120947870 C G COQ5 Missense_Mutation p.D211H 0.41 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 12 121615184 121615184 C T P2RX7 Nonsense_Mutation p.Q375* 0.18 TCGA-BT-A3PJ-01 12 121878735 121878735 G A KDM2B Missense_Mutation p.S1165L 0.26 deleterious(0) probably_damaging(0.996) TCGA-BT-A3PJ-01 12 122991412 122991412 T C RSRC2 Missense_Mutation p.N365S 0.39 deleterious(0.03) unknown(0) TCGA-BT-A3PJ-01 12 123434347 123434347 C T ABCB9 Missense_Mutation p.E279K 0.25 tolerated(0.23) benign(0.223) TCGA-BT-A3PJ-01 12 124330151 124330151 G A DNAH10 Missense_Mutation p.D1671N 0.43 possibly_damaging(0.482) TCGA-BT-A3PJ-01 12 124345611 124345611 A G DNAH10 Missense_Mutation p.I2150V 0.44 benign(0.058) TCGA-BT-A3PJ-01 12 12483694 12483694 A G MANSC1 Missense_Mutation p.M188T 0.37 tolerated(0.34) benign(0) TCGA-BT-A3PJ-01 12 125834468 125834468 C T TMEM132B Missense_Mutation p.R175W 0.41 deleterious(0) probably_damaging(0.927) TCGA-BT-A3PJ-01 12 133384936 133384936 G C GOLGA3 Nonsense_Mutation p.S240* 0.41 TCGA-BT-A3PJ-01 12 14924033 14924033 G A HIST4H4 5'UTR 0.34 TCGA-BT-A3PJ-01 12 14927359 14927359 G A H2AFJ 5'UTR 0.39 TCGA-BT-A3PJ-01 12 21453315 21453315 C T SLCO1A2 Missense_Mutation p.E293K 0.15 tolerated(0.73) benign(0.008) TCGA-BT-A3PJ-01 12 27470859 27470859 A G STK38L Missense_Mutation p.Q329R 0.34 tolerated(0.38) benign(0.248) TCGA-BT-A3PJ-01 12 284199 284199 G C IQSEC3 Nonstop_Mutation p.*1183Yext*108 0.49 TCGA-BT-A3PJ-01 12 2944040 2944040 G A NRIP2 Missense_Mutation p.P37L 0.32 tolerated_low_confidence(0.06) benign(0.011) TCGA-BT-A3PJ-01 12 31632937 31632937 C A DENND5B Nonsense_Mutation p.E164* 0.32 TCGA-BT-A3PJ-01 12 49364343 49364343 C T WNT10B 5'UTR 0.56 TCGA-BT-A3PJ-01 12 49443747 49443747 G C KMT2D Missense_Mutation p.I1208M 0.39 probably_damaging(0.996) TCGA-BT-A3PJ-01 12 49494208 49494208 G A LMBR1L Silent p.V401V 0.31 TCGA-BT-A3PJ-01 12 49724323 49724323 G T TROAP Missense_Mutation p.E565D 0.20 tolerated_low_confidence(0.42) benign(0.388) TCGA-BT-A3PJ-01 12 50189089 50189089 C T NCKAP5L Missense_Mutation p.D852N 0.18 deleterious(0.02) possibly_damaging(0.492) TCGA-BT-A3PJ-01 12 50615999 50615999 G C LIMA1 Missense_Mutation p.I145M 0.16 tolerated(0.23) benign(0.011) TCGA-BT-A3PJ-01 12 50616215 50616215 C T LIMA1 Silent p.K73K 0.39 TCGA-BT-A3PJ-01 12 51207891 51207891 C T ATF1 Nonsense_Mutation p.Q143* 0.17 TCGA-BT-A3PJ-01 12 54920519 54920519 C T NCKAP1L Silent p.L788L 0.41 TCGA-BT-A3PJ-01 12 56749506 56749506 G A STAT2 Nonsense_Mutation p.Q123* 0.38 TCGA-BT-A3PJ-01 12 57638146 57638146 T A STAC3 Silent p.P270P 0.21 TCGA-BT-A3PJ-01 12 64784273 64784273 G T C12orf56 Missense_Mutation p.L25M 0.37 tolerated(0.22) probably_damaging(0.998) TCGA-BT-A3PJ-01 12 66605248 66605248 C G IRAK3 Missense_Mutation p.I153M 0.44 tolerated(0.13) benign(0.111) TCGA-BT-A3PJ-01 12 69968139 69968139 G A FRS2 Missense_Mutation p.G311R 0.36 deleterious(0.03) benign(0.017) TCGA-BT-A3PJ-01 12 7175803 7175803 G A C1S Silent p.V413V 0.28 TCGA-BT-A3PJ-01 12 72425529 72425529 C T TPH2 3'UTR 0.17 TCGA-BT-A3PJ-01 12 77417920 77417920 C T E2F7 Missense_Mutation p.E871K 0.13 tolerated(0.09) possibly_damaging(0.906) TCGA-BT-A3PJ-01 12 80672819 80672819 G A OTOGL Missense_Mutation p.R925Q 0.16 tolerated(0.19) probably_damaging(0.935) TCGA-BT-A3PJ-01 12 862795 862795 G T WNK1 Missense_Mutation p.A22S 0.35 tolerated(0.3) unknown(0) TCGA-BT-A3PJ-01 12 91347544 91347544 C T CCER1 Missense_Mutation p.E326K 0.30 tolerated(0.38) unknown(0) TCGA-BT-A3PJ-01 12 9242527 9242527 C G A2M Missense_Mutation p.D897H 0.28 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 13 102029158 102029158 C T NALCN Nonsense_Mutation p.W179* 0.15 TCGA-BT-A3PJ-01 13 103279421 103279421 C A TPP2 Silent p.R282R 0.25 TCGA-BT-A3PJ-01 13 113532536 113532536 G C ATP11A Missense_Mutation p.K1111N 0.29 tolerated(0.38) benign(0.001) TCGA-BT-A3PJ-01 13 22178097 22178097 C G MICU2 Missense_Mutation p.S64T 0.17 tolerated(0.56) benign(0.003) TCGA-BT-A3PJ-01 13 24449002 24449002 G A MIPEP Missense_Mutation p.H196Y 0.19 deleterious(0) probably_damaging(0.994) TCGA-BT-A3PJ-01 13 28197305 28197305 G A POLR1D Missense_Mutation p.C107Y 0.28 deleterious(0) probably_damaging(0.963) TCGA-BT-A3PJ-01 13 33638310 33638310 G A KL Missense_Mutation p.R1009K 0.25 tolerated(0.64) benign(0.004) TCGA-BT-A3PJ-01 13 37394043 37394043 G A RFXAP Silent p.L183L 0.50 TCGA-BT-A3PJ-01 13 39621833 39621833 T C NHLRC3 Silent p.L272L 0.57 TCGA-BT-A3PJ-01 13 42876628 42876628 C T AKAP11 Missense_Mutation p.S1249L 0.46 deleterious(0.04) benign(0.012) TCGA-BT-A3PJ-01 13 42877371 42877371 G A AKAP11 Missense_Mutation p.E1497K 0.51 tolerated(0.11) benign(0.019) TCGA-BT-A3PJ-01 13 48937042 48937043 - A RB1 Frame_Shift_Ins p.T271Nfs*5 0.29 TCGA-BT-A3PJ-01 13 53418738 53418738 C A PCDH8 Missense_Mutation p.G1057V 0.51 tolerated_low_confidence(0.15) possibly_damaging(0.566) TCGA-BT-A3PJ-01 13 77743847 77743847 C T MYCBP2 Missense_Mutation p.D1895N 0.37 benign(0.069) TCGA-BT-A3PJ-01 13 98652878 98652880 ATT - IPO5 In_Frame_Del p.I381del 0.28 TCGA-BT-A3PJ-01 14 102551654 102551654 C G HSP90AA1 Missense_Mutation p.G337A 0.11 tolerated_low_confidence(0.08) probably_damaging(0.933) TCGA-BT-A3PJ-01 14 21792872 21792872 C G RPGRIP1 Missense_Mutation p.L620V 0.18 tolerated(0.26) benign(0.043) TCGA-BT-A3PJ-01 14 22192379 22192379 C G TRAV3 Missense_Mutation p.L52V 0.37 deleterious(0.01) probably_damaging(0.926) TCGA-BT-A3PJ-01 14 22192435 22192435 C T TRAV3 Silent p.I70I 0.33 TCGA-BT-A3PJ-01 14 22392709 22392709 A T TRAV14DV4 Missense_Mutation p.N78Y 0.15 TCGA-BT-A3PJ-01 14 23444283 23444283 G T AJUBA Missense_Mutation p.P424T 0.21 deleterious(0) probably_damaging(0.975) TCGA-BT-A3PJ-01 14 23588121 23588121 C T CEBPE Silent p.V60V 0.33 TCGA-BT-A3PJ-01 14 25044606 25044606 C G CTSG Missense_Mutation p.G23A 0.45 deleterious(0.01) probably_damaging(0.94) TCGA-BT-A3PJ-01 14 31535513 31535513 G A AP4S1 Silent p.K37K 0.21 TCGA-BT-A3PJ-01 14 35557192 35557192 G A PPP2R3C Missense_Mutation p.H380Y 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-BT-A3PJ-01 14 51237206 51237208 AGG - NIN In_Frame_Del p.I444_L445delinsM 0.21 TCGA-BT-A3PJ-01 14 54948149 54948149 C T GMFB Missense_Mutation p.E60K 0.12 deleterious(0.03) possibly_damaging(0.691) TCGA-BT-A3PJ-01 14 55852662 55852662 C A ATG14 Nonsense_Mutation p.E188* 0.15 TCGA-BT-A3PJ-01 14 64936344 64936344 T G AKAP5 Missense_Mutation p.L411R 0.17 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PJ-01 14 68086727 68086727 C T ARG2 Silent p.L11L 0.14 TCGA-BT-A3PJ-01 14 74179620 74179620 C T PNMA1 Silent p.E241E 0.24 TCGA-BT-A3PJ-01 14 89044479 89044479 A T ZC3H14 Missense_Mutation p.N425I 0.17 tolerated(0.19) benign(0.001) TCGA-BT-A3PJ-01 14 92922835 92922835 C A SLC24A4 Missense_Mutation p.P380T 0.42 tolerated(0.16) benign(0.266) TCGA-BT-A3PJ-01 15 101112154 101112154 C T LINS Missense_Mutation p.D447N 0.46 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PJ-01 15 28326981 28326981 C T OCA2 Missense_Mutation p.A14T 0.27 tolerated_low_confidence(0.65) benign(0) TCGA-BT-A3PJ-01 15 33916209 33916209 C T RYR3 Silent p.P853P 0.37 TCGA-BT-A3PJ-01 15 37109476 37109476 G C CSNK1A1P1 RNA 0.36 TCGA-BT-A3PJ-01 15 40512774 40512774 T C BUB1B Silent p.D989D 0.20 TCGA-BT-A3PJ-01 15 40627522 40627522 C T C15orf52 Missense_Mutation p.G481E 0.17 tolerated(0.75) benign(0.034) TCGA-BT-A3PJ-01 15 42202032 42202032 C T EHD4 Silent p.K318K 0.23 TCGA-BT-A3PJ-01 15 42840409 42840409 G A LRRC57 Missense_Mutation p.L40F 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 15 43816763 43816763 G T MAP1A Missense_Mutation p.G1031V 0.43 possibly_damaging(0.474) TCGA-BT-A3PJ-01 15 48057291 48057291 C G SEMA6D Intron 0.25 TCGA-BT-A3PJ-01 15 49431772 49431772 C G COPS2 Missense_Mutation p.E109Q 0.48 deleterious(0) possibly_damaging(0.642) TCGA-BT-A3PJ-01 15 51791720 51791720 C T DMXL2 Missense_Mutation p.R1234K 0.35 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PJ-01 15 54003547 54003547 A G WDR72 Silent p.Y281Y 0.34 TCGA-BT-A3PJ-01 15 55611498 55611498 C T PIGB Missense_Mutation p.A17V 0.11 tolerated_low_confidence(0.14) benign(0.013) TCGA-BT-A3PJ-01 15 58855765 58855765 G C LIPC Missense_Mutation p.G411R 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 15 63908715 63908715 C T HERC1 Missense_Mutation p.E4619K 0.30 probably_damaging(0.998) TCGA-BT-A3PJ-01 15 63948074 63948074 G A HERC1 Silent p.L3317L 0.57 TCGA-BT-A3PJ-01 15 64010869 64010869 T C HERC1 Silent p.S1294S 0.25 TCGA-BT-A3PJ-01 15 64067652 64067652 G C HERC1 Silent p.L57L 0.30 TCGA-BT-A3PJ-01 15 64455081 64455081 C T PPIB Silent p.E35E 0.26 TCGA-BT-A3PJ-01 15 65871971 65871971 A C VWA9 Silent p.A387A 0.21 TCGA-BT-A3PJ-01 15 69561007 69561007 G C GLCE Silent p.V426V 0.38 TCGA-BT-A3PJ-01 15 69561321 69561321 G A GLCE Missense_Mutation p.G531E 0.31 tolerated(0.21) probably_damaging(0.996) TCGA-BT-A3PJ-01 15 69737226 69737226 C T KIF23 Missense_Mutation p.S826F 0.39 deleterious(0.01) benign(0.081) TCGA-BT-A3PJ-01 15 71185118 71185118 C G THAP10 5'UTR 0.58 TCGA-BT-A3PJ-01 15 74836792 74836792 G C ARID3B Missense_Mutation p.G172A 0.43 tolerated(0.06) benign(0.041) TCGA-BT-A3PJ-01 15 75043585 75043585 G C CYP1A2 Missense_Mutation p.R296T 0.40 tolerated(0.39) benign(0.111) TCGA-BT-A3PJ-01 15 77241555 77241555 G A RCN2 Missense_Mutation p.E316K 0.16 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 15 80889691 80889691 G C ARNT2 3'UTR 0.17 TCGA-BT-A3PJ-01 15 80988240 80988240 C T ABHD17C Missense_Mutation p.S157F 0.17 tolerated(0.68) benign(0.04) TCGA-BT-A3PJ-01 15 81605709 81605709 T C STARD5 Missense_Mutation p.H177R 0.39 deleterious(0) possibly_damaging(0.532) TCGA-BT-A3PJ-01 15 85121450 85121450 T C LINC00933 RNA 0.22 TCGA-BT-A3PJ-01 15 85407673 85407673 G A ALPK3 Silent p.E1702E 0.37 TCGA-BT-A3PJ-01 15 86122380 86122380 G A AKAP13 Missense_Mutation p.E361K 0.16 tolerated(0.76) benign(0.009) TCGA-BT-A3PJ-01 15 89911325 89911325 G A MIR9-3 RNA 0.41 TCGA-BT-A3PJ-01 15 91450061 91450061 G A MAN2A2 Missense_Mutation p.M309I 0.25 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PJ-01 15 91810843 91810843 T C SV2B Missense_Mutation p.L393P 0.14 deleterious(0) probably_damaging(0.987) TCGA-BT-A3PJ-01 16 1559872 1559872 G T TELO2 Missense_Mutation p.A817S 0.23 deleterious(0.05) possibly_damaging(0.739) TCGA-BT-A3PJ-01 16 29994974 29994988 ACCGCCTCCCTGGTG - TAOK2 Splice_Site p.X471_splice 0.22 TCGA-BT-A3PJ-01 16 31502227 31502227 C T C16orf58 Missense_Mutation p.E446K 0.15 tolerated(0.15) benign(0.126) TCGA-BT-A3PJ-01 16 3786760 3786760 A G CREBBP Missense_Mutation p.F1484S 0.49 unknown(0) TCGA-BT-A3PJ-01 16 50733855 50733855 C T NOD2 Missense_Mutation p.P177L 0.05 tolerated(0.21) possibly_damaging(0.531) TCGA-BT-A3PJ-01 16 56485200 56485200 C G NUDT21 5'UTR 0.30 TCGA-BT-A3PJ-01 16 57787344 57787344 G A KATNB1 Missense_Mutation p.E364K 0.12 tolerated(0.06) possibly_damaging(0.55) TCGA-BT-A3PJ-01 16 67314065 67314065 C T PLEKHG4 Nonsense_Mutation p.Q40* 0.53 TCGA-BT-A3PJ-01 16 67861946 67861946 A G TSNAXIP1 3'UTR 0.14 TCGA-BT-A3PJ-01 16 67877394 67877394 G T THAP11 Nonsense_Mutation p.G313* 0.43 TCGA-BT-A3PJ-01 16 69279609 69279609 G A SNTB2 Missense_Mutation p.E229K 0.44 tolerated(0.39) benign(0.259) TCGA-BT-A3PJ-01 16 70531255 70531255 C T COG4 Silent p.L450L 0.43 TCGA-BT-A3PJ-01 16 70602260 70602260 C A SF3B3 Missense_Mutation p.F1009L 0.43 tolerated(0.15) benign(0.002) TCGA-BT-A3PJ-01 16 74678291 74678291 A C RFWD3 Missense_Mutation p.L350V 0.14 tolerated(0.16) benign(0.255) TCGA-BT-A3PJ-01 16 84075602 84075602 C T SLC38A8 Missense_Mutation p.G54E 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 16 84211366 84211366 G C DNAAF1 Missense_Mutation p.E699D 0.17 tolerated_low_confidence(0.06) benign(0.008) TCGA-BT-A3PJ-01 17 12897026 12897026 C T ELAC2 Missense_Mutation p.G744E 0.11 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PJ-01 17 15532492 15532492 C T RP11-385D13.1 Missense_Mutation p.D378N 0.37 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-BT-A3PJ-01 17 15942889 15942889 G A NCOR1 Silent p.L2271L 0.26 TCGA-BT-A3PJ-01 17 15995169 15995169 C G NCOR1 Intron 0.26 TCGA-BT-A3PJ-01 17 17696270 17696270 C G RAI1 Missense_Mutation p.S3C 0.38 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 17 18167285 18167285 C T MIEF2 Missense_Mutation p.A202V 0.30 deleterious(0.04) benign(0.058) TCGA-BT-A3PJ-01 17 18565289 18565289 G A ZNF286B Silent p.L510L 0.25 TCGA-BT-A3PJ-01 17 19091387 19091387 G C SNORD3A RNA 0.04 TCGA-BT-A3PJ-01 17 19648427 19648427 C T ALDH3A1 Missense_Mutation p.E6K 0.31 tolerated(0.38) benign(0.321) TCGA-BT-A3PJ-01 17 19861683 19861683 A T AKAP10 Missense_Mutation p.L174Q 0.29 deleterious(0.04) probably_damaging(0.99) TCGA-BT-A3PJ-01 17 21205466 21205466 G T MAP2K3 Missense_Mutation p.W137C 0.17 deleterious(0) possibly_damaging(0.762) TCGA-BT-A3PJ-01 17 26862193 26862193 C T FOXN1 Missense_Mutation p.S535L 0.29 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PJ-01 17 27010765 27010765 C T SUPT6H Silent p.F720F 0.31 TCGA-BT-A3PJ-01 17 27051729 27051729 G C TLCD1 Silent p.L181L 0.19 TCGA-BT-A3PJ-01 17 27809286 27809286 G A TAOK1 Missense_Mutation p.G212E 0.32 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 17 28750013 28750013 A G CPD Missense_Mutation p.I543M 0.24 tolerated(0.07) probably_damaging(0.982) TCGA-BT-A3PJ-01 17 33259398 33259398 G C CCT6B Silent p.L445L 0.19 TCGA-BT-A3PJ-01 17 33482390 33482390 C T UNC45B Silent p.L239L 0.34 TCGA-BT-A3PJ-01 17 38445697 38445697 C T CDC6 Nonsense_Mutation p.Q9* 0.37 TCGA-BT-A3PJ-01 17 38910244 38910244 G A KRT25 Silent p.H179H 0.15 TCGA-BT-A3PJ-01 17 39684530 39684530 G A KRT19 5'UTR 0.26 TCGA-BT-A3PJ-01 17 40575088 40575088 C G PTRF Missense_Mutation p.E10Q 0.27 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BT-A3PJ-01 17 40716813 40716813 G A COASY Silent p.L407L 0.34 TCGA-BT-A3PJ-01 17 40729612 40729612 C T PSMC3IP Intron 0.30 TCGA-BT-A3PJ-01 17 43195690 43195690 G A PLCD3 Silent p.I361I 0.23 TCGA-BT-A3PJ-01 17 45056167 45056167 C T RPRML Silent p.Q69Q 0.25 TCGA-BT-A3PJ-01 17 46607930 46607930 G C HOXB1 Missense_Mutation p.P113A 0.14 tolerated(0.2) benign(0.437) TCGA-BT-A3PJ-01 17 46628332 46628332 C T HOXB3 Silent p.E220E 0.18 TCGA-BT-A3PJ-01 17 46703546 46703546 G A HOXB9 Missense_Mutation p.P29L 0.18 tolerated(0.15) benign(0.342) TCGA-BT-A3PJ-01 17 46703547 46703547 G A HOXB9 Missense_Mutation p.P29S 0.17 tolerated(0.61) benign(0.026) TCGA-BT-A3PJ-01 17 4841188 4841188 C T SLC25A11 Missense_Mutation p.V265M 0.30 deleterious(0.02) possibly_damaging(0.507) TCGA-BT-A3PJ-01 17 48614133 48614133 G A EPN3 Silent p.R72R 0.18 TCGA-BT-A3PJ-01 17 49198014 49198014 C G SPAG9 Missense_Mutation p.E2Q 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-BT-A3PJ-01 17 49825019 49825019 G A CA10 Missense_Mutation p.L147F 0.17 deleterious(0.01) possibly_damaging(0.549) TCGA-BT-A3PJ-01 17 5352201 5352201 C A DHX33 Missense_Mutation p.E581D 0.33 tolerated(0.45) benign(0.033) TCGA-BT-A3PJ-01 17 53844767 53844767 C T PCTP Silent p.I71I 0.38 TCGA-BT-A3PJ-01 17 57775139 57775139 C T PTRH2 Missense_Mutation p.M67I 0.27 deleterious(0.01) possibly_damaging(0.78) TCGA-BT-A3PJ-01 17 61623247 61623247 G A KCNH6 Missense_Mutation p.G990E 0.23 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-BT-A3PJ-01 17 62499341 62499341 C T DDX5 Missense_Mutation p.E259K 0.18 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PJ-01 17 62523291 62523291 T C CEP95 Silent p.T405T 0.15 TCGA-BT-A3PJ-01 17 62783397 62783397 G C PLEKHM1P RNA 0.09 TCGA-BT-A3PJ-01 17 65890162 65890162 C G BPTF Missense_Mutation p.I808M 0.40 probably_damaging(0.963) TCGA-BT-A3PJ-01 17 6659401 6659401 G A XAF1 Missense_Mutation p.E2K 0.66 deleterious(0.04) possibly_damaging(0.567) TCGA-BT-A3PJ-01 17 691281 691281 G C RNMTL1 Missense_Mutation p.L212F 0.31 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 17 6915930 6915930 G C AC040977.1 Missense_Mutation p.R174G 0.38 deleterious_low_confidence(0) benign(0.3) TCGA-BT-A3PJ-01 17 71192710 71192710 T A COG1 Missense_Mutation p.I127N 0.36 deleterious(0) probably_damaging(0.954) TCGA-BT-A3PJ-01 17 72353375 72353375 C T BTBD17 Silent p.L286L 0.38 TCGA-BT-A3PJ-01 17 73316530 73316530 G C GRB2 Silent p.P191P 0.22 TCGA-BT-A3PJ-01 17 73727372 73727372 G A ITGB4 Missense_Mutation p.G380S 0.12 tolerated(0.14) probably_damaging(0.96) TCGA-BT-A3PJ-01 17 73872354 73872364 TGACTGAGTCA - TRIM47 Frame_Shift_Del p.D328Lfs*71 0.23 TCGA-BT-A3PJ-01 17 74732409 74732409 C T SRSF2 Missense_Mutation p.R167Q 0.19 tolerated(0.7) unknown(0) TCGA-BT-A3PJ-01 17 7577108 7577108 C A TP53 Missense_Mutation p.C277F 0.43 deleterious(0) probably_damaging(0.949) TCGA-BT-A3PJ-01 17 76415624 76415624 C G PGS1 Intron 0.20 TCGA-BT-A3PJ-01 17 76503684 76503684 G A DNAH17 Silent p.S1476S 0.15 TCGA-BT-A3PJ-01 17 77082023 77082040 CGCTGCCAGCCTGCTGGC - ENGASE In_Frame_Del p.A609_A614del 0.43 TCGA-BT-A3PJ-01 17 78073333 78073333 C G CCDC40 Nonsense_Mutation p.S1063* 0.46 TCGA-BT-A3PJ-01 17 79813139 79813139 G A P4HB Missense_Mutation p.S168F 0.23 tolerated(0.08) benign(0.007) TCGA-BT-A3PJ-01 17 8018935 8018935 C G ALOXE3 Missense_Mutation p.E274Q 0.36 tolerated(0.22) benign(0.017) TCGA-BT-A3PJ-01 17 9153949 9153949 C T STX8 Silent p.V219V 0.35 TCGA-BT-A3PJ-01 18 19321641 19321641 G A MIB1 Missense_Mutation p.E33K 0.39 deleterious(0) possibly_damaging(0.752) TCGA-BT-A3PJ-01 18 21136222 21136222 T C NPC1 Missense_Mutation p.I437M 0.34 tolerated(0.09) benign(0.058) TCGA-BT-A3PJ-01 18 21422437 21422437 C A LAMA3 Missense_Mutation p.P1139T 0.40 benign(0.153) TCGA-BT-A3PJ-01 18 21479343 21479343 G A LAMA3 Missense_Mutation p.M1976I 0.20 possibly_damaging(0.85) TCGA-BT-A3PJ-01 18 28916515 28916515 G A DSG1 Missense_Mutation p.D402N 0.21 tolerated(0.2) benign(0.017) TCGA-BT-A3PJ-01 18 3499318 3499318 C T DLGAP1 Silent p.L933L 0.23 TCGA-BT-A3PJ-01 18 43450624 43450624 C T EPG5 Missense_Mutation p.E2045K 0.27 tolerated(0.09) probably_damaging(0.953) TCGA-BT-A3PJ-01 18 44775013 44775013 A T SKOR2 Missense_Mutation p.F181Y 0.33 probably_damaging(0.955) TCGA-BT-A3PJ-01 18 47800628 47800639 GTCGCAGCAGAA - MBD1 In_Frame_Del p.F355_D358del 0.08 TCGA-BT-A3PJ-01 18 5438071 5438071 G C EPB41L3 Missense_Mutation p.P190A 0.23 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 18 72775115 72775115 C T ZNF407 Missense_Mutation p.S1813F 0.36 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PJ-01 18 74091492 74091492 C G ZNF516 Missense_Mutation p.A860P 0.13 tolerated(0.23) possibly_damaging(0.881) TCGA-BT-A3PJ-01 19 10818004 10818004 G A QTRT1 Missense_Mutation p.D160N 0.16 deleterious(0) probably_damaging(0.959) TCGA-BT-A3PJ-01 19 10897350 10897350 C T DNM2 Silent p.D320D 0.42 TCGA-BT-A3PJ-01 19 11287304 11287304 G A KANK2 Silent p.H578H 0.22 TCGA-BT-A3PJ-01 19 11332547 11332547 G A DOCK6 Missense_Mutation p.P1177L 0.31 tolerated(0.05) benign(0.033) TCGA-BT-A3PJ-01 19 11332548 11332548 G T DOCK6 Missense_Mutation p.P1177T 0.32 tolerated(0.07) benign(0.056) TCGA-BT-A3PJ-01 19 11832850 11832850 T G ZNF823 Missense_Mutation p.E500A 0.42 deleterious(0.01) possibly_damaging(0.575) TCGA-BT-A3PJ-01 19 11944185 11944185 G C ZNF440 3'UTR 0.33 TCGA-BT-A3PJ-01 19 15355563 15355563 C T BRD4 Silent p.P723P 0.17 TCGA-BT-A3PJ-01 19 17440802 17440802 G C ANO8 Missense_Mutation p.A432G 0.20 deleterious(0.01) possibly_damaging(0.782) TCGA-BT-A3PJ-01 19 1784889 1784889 C T ATP8B3 Missense_Mutation p.V1197M 0.17 deleterious(0.03) possibly_damaging(0.903) TCGA-BT-A3PJ-01 19 1980320 1980320 G C CSNK1G2 3'UTR 0.58 TCGA-BT-A3PJ-01 19 2151334 2151334 C T AP3D1 5'UTR 0.14 TCGA-BT-A3PJ-01 19 2808407 2808407 G C THOP1 Missense_Mutation p.E474Q 0.15 deleterious(0) possibly_damaging(0.88) TCGA-BT-A3PJ-01 19 31040309 31040309 G A ZNF536 Silent p.P1261P 0.22 TCGA-BT-A3PJ-01 19 3290311 3290311 C T CELF5 Silent p.F423F 0.22 TCGA-BT-A3PJ-01 19 35940871 35940871 G A FFAR2 Silent p.T85T 0.36 TCGA-BT-A3PJ-01 19 36393522 36393522 C T HCST Silent p.F9F 0.46 TCGA-BT-A3PJ-01 19 41889840 41889840 G C TMEM91 3'UTR 0.37 TCGA-BT-A3PJ-01 19 42558025 42558025 G A GRIK5 Silent p.T371T 0.29 TCGA-BT-A3PJ-01 19 43093837 43093837 C T CEACAM8 Missense_Mutation p.D159N 0.28 tolerated(0.91) benign(0.025) TCGA-BT-A3PJ-01 19 45574784 45574784 G A ZNF296 3'UTR 0.39 TCGA-BT-A3PJ-01 19 45860556 45860556 G A ERCC2 Missense_Mutation p.T484M 0.34 deleterious(0) possibly_damaging(0.878) TCGA-BT-A3PJ-01 19 47933517 47933517 G A SLC8A2 Silent p.F865F 0.20 TCGA-BT-A3PJ-01 19 48229178 48229178 C T EHD2 Silent p.I204I 0.36 TCGA-BT-A3PJ-01 19 4861338 4861338 C T PLIN3 Intron 0.21 TCGA-BT-A3PJ-01 19 49238513 49238513 G A RASIP1 Silent p.L373L 0.25 TCGA-BT-A3PJ-01 19 49379181 49379181 C T PPP1R15A Missense_Mutation p.S659L 0.34 tolerated(0.37) unknown(0) TCGA-BT-A3PJ-01 19 49458143 49458143 G C BAX 5'Flank 0.27 TCGA-BT-A3PJ-01 19 49473902 49473902 G T GYS1 Missense_Mutation p.F570L 0.19 tolerated(0.13) benign(0.167) TCGA-BT-A3PJ-01 19 49658061 49658061 G C HRC Nonsense_Mutation p.S145* 0.28 TCGA-BT-A3PJ-01 19 51381756 51381756 T C KLK2 Missense_Mutation p.Y243H 0.32 deleterious(0) possibly_damaging(0.885) TCGA-BT-A3PJ-01 19 51499316 51499316 C T KLK8 Silent p.%3D 0.29 TCGA-BT-A3PJ-01 19 53572357 53572357 C T ZNF160 Missense_Mutation p.G477E 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A3PJ-01 19 55087422 55087422 G T LILRA2 Silent p.L367L 0.12 TCGA-BT-A3PJ-01 19 56369129 56369129 G A NLRP4 Missense_Mutation p.E124K 0.34 tolerated(1) benign(0.001) TCGA-BT-A3PJ-01 19 56538546 56538546 T A NLRP5 Missense_Mutation p.V316D 0.36 deleterious(0) possibly_damaging(0.528) TCGA-BT-A3PJ-01 19 5719793 5719793 G A LONP1 Silent p.I117I 0.34 TCGA-BT-A3PJ-01 19 58131977 58131977 G C ZNF134 Missense_Mutation p.E164Q 0.39 tolerated(0.1) benign(0.015) TCGA-BT-A3PJ-01 19 58982235 58982235 C T ZNF324 Missense_Mutation p.R126W 0.32 tolerated(0.07) possibly_damaging(0.551) TCGA-BT-A3PJ-01 19 7734744 7734744 G A RETN Silent p.Q52Q 0.40 TCGA-BT-A3PJ-01 19 7974989 7974989 C T MAP2K7 Missense_Mutation p.T103M 0.26 deleterious(0) probably_damaging(0.932) TCGA-BT-A3PJ-01 1 100950076 100950076 A G CDC14A Intron 0.39 TCGA-BT-A3PJ-01 1 10364665 10364665 C T KIF1B Intron 0.39 TCGA-BT-A3PJ-01 1 109793958 109793958 C G CELSR2 Silent p.L419L 0.42 TCGA-BT-A3PJ-01 1 109795716 109795716 C T CELSR2 Silent p.S1005S 0.17 TCGA-BT-A3PJ-01 1 114226131 114226131 G A MAGI3 Missense_Mutation p.R1314Q 0.32 tolerated_low_confidence(0.3) benign(0.01) TCGA-BT-A3PJ-01 1 11708769 11708769 G A FBXO2 Silent p.S291S 0.38 TCGA-BT-A3PJ-01 1 119958115 119958115 G C HSD3B2 Missense_Mutation p.E25Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-BT-A3PJ-01 1 1309762 1309762 C G AURKAIP1 Missense_Mutation p.S39T 0.39 deleterious(0.03) benign(0.091) TCGA-BT-A3PJ-01 1 145109581 145109581 G A SEC22B RNA 0.09 TCGA-BT-A3PJ-01 1 154962840 154962840 G C FLAD1 Missense_Mutation p.E464Q 0.20 tolerated(0.21) benign(0.158) TCGA-BT-A3PJ-01 1 155883876 155883876 G C KIAA0907 3'UTR 0.44 TCGA-BT-A3PJ-01 1 156105709 156105709 G A LMNA Silent p.A318A 0.29 TCGA-BT-A3PJ-01 1 156593740 156593740 G C HAPLN2 Missense_Mutation p.G76A 0.71 tolerated(0.69) benign(0.016) TCGA-BT-A3PJ-01 1 156594201 156594201 G A HAPLN2 Silent p.A166A 0.34 TCGA-BT-A3PJ-01 1 158226040 158226040 T C CD1A Missense_Mutation p.L191P 0.24 deleterious(0.01) probably_damaging(0.966) TCGA-BT-A3PJ-01 1 158576243 158576243 C G OR10Z1 Missense_Mutation p.N5K 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A3PJ-01 1 160328025 160328025 C T NCSTN Silent p.F698F 0.07 TCGA-BT-A3PJ-01 1 162337159 162337159 G T NOS1AP Nonsense_Mutation p.E475* 0.06 TCGA-BT-A3PJ-01 1 16902787 16902787 C A NBPF1 Missense_Mutation p.Q698H 0.03 deleterious(0.03) probably_damaging(0.996) TCGA-BT-A3PJ-01 1 17552410 17552410 G A PADI1 Silent p.L171L 0.33 TCGA-BT-A3PJ-01 1 182368982 182368982 C T TEDDM1 Silent p.L213L 0.40 TCGA-BT-A3PJ-01 1 183086502 183086502 C G LAMC1 Missense_Mutation p.L538V 0.64 tolerated(0.36) benign(0.004) TCGA-BT-A3PJ-01 1 201030503 201030503 G A CACNA1S Silent p.I1049I 0.45 TCGA-BT-A3PJ-01 1 206320303 206320303 G A CTSE Missense_Mutation p.G149E 0.46 deleterious(0.03) probably_damaging(1) TCGA-BT-A3PJ-01 1 207072706 207072706 A G IL24 Missense_Mutation p.Q30R 0.55 tolerated(0.43) benign(0.006) TCGA-BT-A3PJ-01 1 207241622 207241622 G A PFKFB2 Missense_Mutation p.E319K 0.52 probably_damaging(0.998) TCGA-BT-A3PJ-01 1 216062088 216062088 C T USH2A Missense_Mutation p.D2635N 0.37 probably_damaging(0.962) TCGA-BT-A3PJ-01 1 224420909 224420909 C G NVL Missense_Mutation p.E817Q 0.22 tolerated(0.39) benign(0.042) TCGA-BT-A3PJ-01 1 224477270 224477270 C T NVL Silent p.Q497Q 0.38 TCGA-BT-A3PJ-01 1 227071519 227071519 G A PSEN2 Silent p.A85A 0.19 TCGA-BT-A3PJ-01 1 228645830 228645830 C T HIST3H2BB 5'UTR 0.28 TCGA-BT-A3PJ-01 1 235972637 235972637 G A LYST Missense_Mutation p.S494L 0.35 tolerated(0.06) probably_damaging(0.986) TCGA-BT-A3PJ-01 1 27057835 27057835 C T ARID1A Nonsense_Mutation p.Q515* 0.37 TCGA-BT-A3PJ-01 1 28898397 28898397 G C TRNAU1AP Missense_Mutation p.D238H 0.31 deleterious(0) possibly_damaging(0.606) TCGA-BT-A3PJ-01 1 32849566 32849566 C T BSDC1 Missense_Mutation p.M91I 0.22 tolerated(0.1) benign(0.009) TCGA-BT-A3PJ-01 1 33366863 33366863 C T TMEM54 5'UTR 0.50 TCGA-BT-A3PJ-01 1 33647090 33647090 G A TRIM62 5'UTR 0.24 TCGA-BT-A3PJ-01 1 36301442 36301442 G A AGO4 Silent p.V524V 0.24 TCGA-BT-A3PJ-01 1 40705282 40705282 C G RLF Missense_Mutation p.I1636M 0.41 tolerated(0.19) benign(0.019) TCGA-BT-A3PJ-01 1 40875495 40875495 C G SMAP2 Missense_Mutation p.I130M 0.35 deleterious(0.04) benign(0.19) TCGA-BT-A3PJ-01 1 42047045 42047045 G T HIVEP3 Missense_Mutation p.P1142T 0.30 probably_damaging(0.999) TCGA-BT-A3PJ-01 1 45977057 45977057 C T PRDX1 Missense_Mutation p.D182N 0.36 deleterious(0.04) possibly_damaging(0.648) TCGA-BT-A3PJ-01 1 54618671 54618671 G A CDCP2 5'UTR 0.24 TCGA-BT-A3PJ-01 1 55066985 55066985 G A ACOT11 Missense_Mutation p.E310K 0.30 tolerated(0.38) benign(0.042) TCGA-BT-A3PJ-01 1 60359215 60359215 C A CYP2J2 3'UTR 0.29 TCGA-BT-A3PJ-01 1 62993932 62993932 C T DOCK7 Missense_Mutation p.D1245N 0.33 tolerated(0.06) benign(0.012) TCGA-BT-A3PJ-01 1 64643839 64643839 G A ROR1 Silent p.V705V 0.27 TCGA-BT-A3PJ-01 1 7887376 7887376 C T PER3 Missense_Mutation p.A788V 0.34 tolerated(0.22) possibly_damaging(0.739) TCGA-BT-A3PJ-01 1 8386045 8386045 G A SLC45A1 Missense_Mutation p.D220N 0.28 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 1 8390858 8390858 G A SLC45A1 Silent p.L435L 0.26 TCGA-BT-A3PJ-01 1 8399581 8399581 C T SLC45A1 Silent p.L601L 0.31 TCGA-BT-A3PJ-01 1 85624533 85624533 T A SYDE2 Missense_Mutation p.D1162V 0.44 deleterious(0) possibly_damaging(0.474) TCGA-BT-A3PJ-01 1 8585829 8585829 G A RERE Intron 0.27 TCGA-BT-A3PJ-01 1 92433810 92433810 C A BRDT Silent p.I146I 0.45 TCGA-BT-A3PJ-01 1 94461703 94461703 G C ABCA4 Missense_Mutation p.L2260V 0.24 deleterious(0.03) benign(0.405) TCGA-BT-A3PJ-01 20 20023021 20023021 C T CRNKL1 Missense_Mutation p.R532H 0.40 deleterious(0) possibly_damaging(0.812) TCGA-BT-A3PJ-01 20 25297683 25297683 C A ABHD12 Splice_Site p.X191_splice 0.37 TCGA-BT-A3PJ-01 20 2844876 2844876 A G VPS16 Missense_Mutation p.M555V 0.23 tolerated(0.06) benign(0.433) TCGA-BT-A3PJ-01 20 30432283 30432283 T A FOXS1 3'UTR 0.40 TCGA-BT-A3PJ-01 20 30584822 30584822 C T XKR7 Silent p.V434V 0.19 TCGA-BT-A3PJ-01 20 30897794 30897794 C T KIF3B Silent p.L72L 0.10 TCGA-BT-A3PJ-01 20 3869809 3869809 C T PANK2 Missense_Mutation p.S21F 0.53 tolerated_low_confidence(0.18) benign(0) TCGA-BT-A3PJ-01 20 43580587 43580587 G A TOMM34 Missense_Mutation p.S146L 0.18 deleterious(0.02) benign(0.002) TCGA-BT-A3PJ-01 20 43927050 43927050 C T MATN4 Missense_Mutation p.E396K 0.59 probably_damaging(0.996) TCGA-BT-A3PJ-01 20 44420659 44420659 G A DNTTIP1 Missense_Mutation p.D6N 0.58 deleterious_low_confidence(0) benign(0.342) TCGA-BT-A3PJ-01 20 44453014 44453014 C T TNNC2 Silent p.L77L 0.15 TCGA-BT-A3PJ-01 20 46254142 46254142 G A NCOA3 Missense_Mutation p.D92N 0.58 tolerated(0.18) probably_damaging(0.997) TCGA-BT-A3PJ-01 20 470507 470507 C A CSNK2A1 Missense_Mutation p.D214Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 20 48741537 48741537 G C TMEM189 Intron 0.40 TCGA-BT-A3PJ-01 20 52199147 52199147 G A ZNF217 Silent p.T73T 0.27 TCGA-BT-A3PJ-01 20 5924896 5924896 T A TRMT6 Missense_Mutation p.I124L 0.42 tolerated(0.06) possibly_damaging(0.876) TCGA-BT-A3PJ-01 20 629543 629543 G T RP5-850E9.3 Missense_Mutation p.A81D 0.15 unknown(0) TCGA-BT-A3PJ-01 20 9288501 9288501 C T PLCB4 Missense_Mutation p.P14S 0.28 tolerated(0.13) benign(0.132) TCGA-BT-A3PJ-01 21 34022588 34022588 C G SYNJ1 Missense_Mutation p.M1020I 0.32 tolerated(0.73) benign(0.026) TCGA-BT-A3PJ-01 21 37504755 37504755 C T CBR3 5'Flank 0.29 TCGA-BT-A3PJ-01 21 37744784 37744784 C A MORC3 Missense_Mutation p.T874K 0.21 tolerated(0.26) probably_damaging(0.964) TCGA-BT-A3PJ-01 21 39671488 39671488 C G KCNJ15 Nonsense_Mutation p.S102* 0.45 TCGA-BT-A3PJ-01 21 39755585 39755585 C A ERG Missense_Mutation p.G401W 0.38 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 21 40590434 40590434 G T BRWD1 Missense_Mutation p.L1179I 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-BT-A3PJ-01 21 42840425 42840425 G A TMPRSS2 Silent p.L441L 0.38 TCGA-BT-A3PJ-01 21 44270075 44270075 C G WDR4 3'UTR 0.39 TCGA-BT-A3PJ-01 21 47746353 47746353 G A PCNT Silent p.A39A 0.34 TCGA-BT-A3PJ-01 21 47858172 47858172 G A PCNT Silent p.E3065E 0.10 TCGA-BT-A3PJ-01 22 22697785 22697785 C G IGLV9-49 Missense_Mutation p.Q25E 0.16 deleterious(0.01) benign(0.42) TCGA-BT-A3PJ-01 22 29745219 29745219 G C AP1B1 Missense_Mutation p.D475E 0.29 tolerated(0.76) benign(0.113) TCGA-BT-A3PJ-01 22 33264982 33264982 C T SYN3 Missense_Mutation p.V198I 0.33 tolerated(1) unknown(0) TCGA-BT-A3PJ-01 22 38014472 38014472 G C GGA1 Missense_Mutation p.M74I 0.21 tolerated(0.06) benign(0.413) TCGA-BT-A3PJ-01 22 40711471 40711471 A T TNRC6B Silent p.S1621S 0.21 TCGA-BT-A3PJ-01 22 42998074 42998074 C T POLDIP3 Intron 0.53 TCGA-BT-A3PJ-01 22 45198028 45198028 C T ARHGAP8 Missense_Mutation p.H173Y 0.11 deleterious(0.04) possibly_damaging(0.838) TCGA-BT-A3PJ-01 2 102480283 102480283 G C MAP4K4 Intron 0.18 TCGA-BT-A3PJ-01 2 108608587 108608587 C T SLC5A7 Silent p.I68I 0.32 TCGA-BT-A3PJ-01 2 109398640 109398640 A G RANBP2 Silent p.K2939K 0.37 TCGA-BT-A3PJ-01 2 114256771 114256771 C T FOXD4L1 5'UTR 0.14 TCGA-BT-A3PJ-01 2 116066832 116066832 C T DPP10 Silent p.S30S 0.43 TCGA-BT-A3PJ-01 2 116572442 116572442 G A DPP10 Missense_Mutation p.D596N 0.22 tolerated(0.26) benign(0.002) TCGA-BT-A3PJ-01 2 128467402 128467402 C T WDR33 Missense_Mutation p.E1113K 0.35 tolerated_low_confidence(0.11) possibly_damaging(0.636) TCGA-BT-A3PJ-01 2 128482710 128482710 G C WDR33 Missense_Mutation p.L311V 0.40 deleterious(0.04) unknown(0) TCGA-BT-A3PJ-01 2 130878029 130878029 G C POTEF Silent p.L20L 0.13 TCGA-BT-A3PJ-01 2 131098587 131098587 A C CCDC115 Silent p.T108T 0.21 TCGA-BT-A3PJ-01 2 131810476 131810476 T C FAM168B Nonstop_Mutation p.*196Wext*6 0.25 TCGA-BT-A3PJ-01 2 133174626 133174626 C T GPR39 Missense_Mutation p.P4L 0.34 tolerated_low_confidence(0.3) benign(0) TCGA-BT-A3PJ-01 2 133531409 133531409 A G NCKAP5 Missense_Mutation p.V1703A 0.38 tolerated(1) benign(0) TCGA-BT-A3PJ-01 2 133721430 133721430 C T NCKAP5 Missense_Mutation p.E148K 0.14 deleterious(0) benign(0.427) TCGA-BT-A3PJ-01 2 145154073 145154073 G C ZEB2 Missense_Mutation p.I991M 0.37 tolerated(1) possibly_damaging(0.854) TCGA-BT-A3PJ-01 2 155099224 155099224 G C GALNT13 Missense_Mutation p.L164F 0.30 deleterious(0.01) benign(0.023) TCGA-BT-A3PJ-01 2 169759031 169759031 G A G6PC2 Missense_Mutation p.E99K 0.17 tolerated(0.57) possibly_damaging(0.756) TCGA-BT-A3PJ-01 2 175263091 175263091 C G SCRN3 Nonsense_Mutation p.S27* 0.15 TCGA-BT-A3PJ-01 2 179480041 179480041 C T TTN Missense_Mutation p.E16211K 0.37 TCGA-BT-A3PJ-01 2 1855420 1855420 G A MYT1L Missense_Mutation p.H921Y 0.31 deleterious(0) probably_damaging(0.974) TCGA-BT-A3PJ-01 2 190593496 190593496 G A ANKAR Missense_Mutation p.A1048T 0.66 tolerated(0.41) benign(0.007) TCGA-BT-A3PJ-01 2 192256914 192256914 G C MYO1B Missense_Mutation p.R688P 0.20 deleterious(0) probably_damaging(0.978) TCGA-BT-A3PJ-01 2 196729276 196729276 G C DNAH7 Missense_Mutation p.S2368C 0.12 deleterious(0) possibly_damaging(0.893) TCGA-BT-A3PJ-01 2 202744799 202744799 A C CDK15 Missense_Mutation p.K369N 0.23 tolerated(0.08) possibly_damaging(0.541) TCGA-BT-A3PJ-01 2 204078256 204078256 C G NBEAL1 Missense_Mutation p.I2621M 0.12 tolerated(0.17) benign(0.001) TCGA-BT-A3PJ-01 2 204154576 204154576 G A CYP20A1 Missense_Mutation p.D354N 0.61 tolerated(0.36) benign(0.03) TCGA-BT-A3PJ-01 2 204304271 204304271 C G RAPH1 Missense_Mutation p.Q1214H 0.14 unknown(0) TCGA-BT-A3PJ-01 2 20647266 20647266 G A RHOB Missense_Mutation p.G14S 0.28 deleterious(0) probably_damaging(0.996) TCGA-BT-A3PJ-01 2 206869295 206869295 C T INO80D Missense_Mutation p.E961K 0.46 deleterious_low_confidence(0.01) benign(0.049) TCGA-BT-A3PJ-01 2 207452091 207452091 C G ADAM23 Missense_Mutation p.Q594E 0.16 tolerated(0.9) benign(0.08) TCGA-BT-A3PJ-01 2 209108167 209108167 G A IDH1 Nonsense_Mutation p.Q228* 0.40 TCGA-BT-A3PJ-01 2 211513262 211513262 G A CPS1 Silent p.L1140L 0.10 TCGA-BT-A3PJ-01 2 216226285 216226285 C T FN1 Missense_Mutation p.R2476Q 0.14 tolerated_low_confidence(0.09) probably_damaging(0.997) TCGA-BT-A3PJ-01 2 220406623 220406638 GGTGTCAGGCACCAGG - CHPF Frame_Shift_Del p.F196Lfs*12 0.33 TCGA-BT-A3PJ-01 2 225751218 225751218 T A DOCK10 Silent p.S149S 0.69 TCGA-BT-A3PJ-01 2 228157990 228157990 A T COL4A3 Silent p.G1098G 0.09 TCGA-BT-A3PJ-01 2 238820246 238820246 G T RAMP1 Missense_Mutation p.D90Y 0.41 deleterious(0) probably_damaging(0.983) TCGA-BT-A3PJ-01 2 239353166 239353166 C T ASB1 Silent p.V226V 0.06 TCGA-BT-A3PJ-01 2 242035224 242035224 G A MTERFD2 3'UTR 0.50 TCGA-BT-A3PJ-01 2 24538094 24538094 C T ITSN2 Splice_Site p.X11_splice 0.24 TCGA-BT-A3PJ-01 2 26799014 26799014 C T C2orf70 Missense_Mutation p.R107C 0.41 deleterious(0) probably_damaging(0.961) TCGA-BT-A3PJ-01 2 28635076 28635076 C - FOSL2 Frame_Shift_Del p.I249Sfs*19 0.24 TCGA-BT-A3PJ-01 2 32418957 32418957 G C SLC30A6 Splice_Site p.X174_splice 0.30 TCGA-BT-A3PJ-01 2 32832645 32832645 C T BIRC6 Nonsense_Mutation p.R4732* 0.36 TCGA-BT-A3PJ-01 2 33813494 33813494 G A FAM98A Nonsense_Mutation p.Q144* 0.28 TCGA-BT-A3PJ-01 2 43452474 43452474 C T ZFP36L2 Missense_Mutation p.E157K 0.19 deleterious(0) probably_damaging(0.974) TCGA-BT-A3PJ-01 2 43452478 43452478 C G ZFP36L2 Missense_Mutation p.K155N 0.18 deleterious(0) probably_damaging(0.987) TCGA-BT-A3PJ-01 2 46739578 46739578 G C ATP6V1E2 Missense_Mutation p.I91M 0.29 deleterious(0) possibly_damaging(0.626) TCGA-BT-A3PJ-01 2 54848571 54848571 A T SPTBN1 Silent p.I266I 0.30 TCGA-BT-A3PJ-01 2 68544244 68544244 C T CNRIP1 Intron 0.27 TCGA-BT-A3PJ-01 2 70008684 70008684 C T ANXA4 5'UTR 0.24 TCGA-BT-A3PJ-01 2 74729743 74729743 C T LBX2 Intron 0.51 TCGA-BT-A3PJ-01 2 79385578 79385578 C T REG3A Silent p.Q69Q 0.29 TCGA-BT-A3PJ-01 2 80530727 80530727 C T LRRTM1 Missense_Mutation p.R73H 0.29 deleterious(0) possibly_damaging(0.719) TCGA-BT-A3PJ-01 2 86305369 86305369 C T POLR1A Silent p.L375L 0.32 TCGA-BT-A3PJ-01 2 95542558 95542558 C T TEKT4 3'UTR 0.30 TCGA-BT-A3PJ-01 2 97779539 97779539 C G ANKRD36 Missense_Mutation p.F21L 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.786) TCGA-BT-A3PJ-01 2 99998633 99998633 G C EIF5B Missense_Mutation p.E691D 0.13 benign(0.03) TCGA-BT-A3PJ-01 3 10138051 10138051 C G FANCD2 Silent p.L1360L 0.45 TCGA-BT-A3PJ-01 3 107881293 107881293 A G IFT57 3'UTR 0.23 TCGA-BT-A3PJ-01 3 110830952 110830952 T C PVRL3 Missense_Mutation p.L79S 0.17 deleterious(0.04) possibly_damaging(0.855) TCGA-BT-A3PJ-01 3 111794169 111794169 C G TMPRSS7 Silent p.T469T 0.18 TCGA-BT-A3PJ-01 3 124438234 124438234 G A RP11-71H17.7 5'Flank 0.17 TCGA-BT-A3PJ-01 3 125652507 125652507 G A ALG1L Missense_Mutation p.S4L 0.22 deleterious(0) possibly_damaging(0.755) TCGA-BT-A3PJ-01 3 12653512 12653512 A C RAF1 Missense_Mutation p.L86R 0.20 deleterious(0) probably_damaging(0.983) TCGA-BT-A3PJ-01 3 127842556 127842556 C G RUVBL1 Missense_Mutation p.E4D 0.20 tolerated(0.13) benign(0.033) TCGA-BT-A3PJ-01 3 131415421 131415421 C G CPNE4 Missense_Mutation p.E158Q 0.55 tolerated(0.4) probably_damaging(0.986) TCGA-BT-A3PJ-01 3 132211337 132211337 C T DNAJC13 Nonsense_Mutation p.Q1235* 0.45 TCGA-BT-A3PJ-01 3 133647173 133647173 C G C3orf36 Missense_Mutation p.G159R 0.15 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-BT-A3PJ-01 3 140675471 140675471 G A SLC25A36 Silent p.L48L 0.14 TCGA-BT-A3PJ-01 3 14941941 14941941 C G FGD5 Silent p.A1062A 0.15 TCGA-BT-A3PJ-01 3 156266665 156266665 G A SSR3 Intron 0.49 TCGA-BT-A3PJ-01 3 160474178 160474178 C T PPM1L Silent p.L28L 0.13 TCGA-BT-A3PJ-01 3 167277882 167277882 A G WDR49 Silent p.L207L 0.14 TCGA-BT-A3PJ-01 3 170198742 170198742 G A SLC7A14 Silent p.F443F 0.47 TCGA-BT-A3PJ-01 3 17448042 17448042 G A TBC1D5 Intron 0.35 TCGA-BT-A3PJ-01 3 180397147 180397147 C T CCDC39 Missense_Mutation p.E8K 0.42 deleterious(0.01) possibly_damaging(0.607) TCGA-BT-A3PJ-01 3 183432930 183432930 A T YEATS2 Splice_Site 0.50 TCGA-BT-A3PJ-01 3 194790762 194790762 G A XXYLT1 Silent p.F288F 0.18 TCGA-BT-A3PJ-01 3 21466996 21466996 C G ZNF385D Silent p.T280T 0.12 TCGA-BT-A3PJ-01 3 25770771 25770771 C G NGLY1 Missense_Mutation p.K488N 0.44 deleterious(0.02) benign(0.024) TCGA-BT-A3PJ-01 3 32578521 32578521 G C DYNC1LI1 Missense_Mutation p.R272G 0.32 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 3 36422160 36422160 G A STAC Missense_Mutation p.E9K 0.19 deleterious_low_confidence(0.03) benign(0.247) TCGA-BT-A3PJ-01 3 47894824 47894824 C T MAP4 Missense_Mutation p.E1094K 0.33 deleterious(0.04) possibly_damaging(0.836) TCGA-BT-A3PJ-01 3 48473791 48473791 C G CCDC51 3'UTR 0.20 TCGA-BT-A3PJ-01 3 49201299 49201299 T A CCDC71 Missense_Mutation p.T115S 0.38 tolerated(0.43) probably_damaging(0.963) TCGA-BT-A3PJ-01 3 49949438 49949438 C T MON1A Missense_Mutation p.G142D 0.22 deleterious(0.04) probably_damaging(0.951) TCGA-BT-A3PJ-01 3 50326727 50326727 C T IFRD2 Missense_Mutation p.E346K 0.27 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 3 51429743 51429743 G A RBM15B Missense_Mutation p.D305N 0.37 tolerated(0.06) benign(0.045) TCGA-BT-A3PJ-01 3 57282256 57282256 T C APPL1 Missense_Mutation p.M247T 0.21 tolerated(0.36) benign(0.012) TCGA-BT-A3PJ-01 3 64084988 64084988 C T PRICKLE2 Silent p.Q758Q 0.18 TCGA-BT-A3PJ-01 3 66449393 66449393 C T LRIG1 Splice_Site p.X411_splice 0.28 TCGA-BT-A3PJ-01 3 69027546 69027546 T C EOGT Missense_Mutation p.R375G 0.18 deleterious(0.01) possibly_damaging(0.765) TCGA-BT-A3PJ-01 3 73432821 73432821 C T PDZRN3 Missense_Mutation p.E966K 0.16 deleterious(0) probably_damaging(0.97) TCGA-BT-A3PJ-01 3 7348315 7348315 C G GRM7 Missense_Mutation p.Q337E 0.10 tolerated(1) benign(0.052) TCGA-BT-A3PJ-01 3 78649289 78649289 C T ROBO1 Missense_Mutation p.G1639R 0.14 tolerated_low_confidence(0.09) unknown(0) TCGA-BT-A3PJ-01 3 97618083 97618083 C T CRYBG3 Silent p.I701I 0.49 TCGA-BT-A3PJ-01 4 101111185 101111185 G A DDIT4L 5'UTR 0.25 TCGA-BT-A3PJ-01 4 109790268 109790268 G A COL25A1 Silent p.G353G 0.13 TCGA-BT-A3PJ-01 4 113199085 113199085 T C TIFA Missense_Mutation p.Y163C 0.23 tolerated(0.33) benign(0) TCGA-BT-A3PJ-01 4 114158209 114158209 G C ANK2 Missense_Mutation p.E184Q 0.19 probably_damaging(0.999) TCGA-BT-A3PJ-01 4 126412206 126412206 C A FAT4 Missense_Mutation p.F4743L 0.15 benign(0.195) TCGA-BT-A3PJ-01 4 128804637 128804637 T C PLK4 Missense_Mutation p.L89S 0.38 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 4 1377693 1377693 C T UVSSA Silent p.T667T 0.17 TCGA-BT-A3PJ-01 4 153831239 153831239 G T ARFIP1 Silent p.L330L 0.38 TCGA-BT-A3PJ-01 4 154506049 154506049 C T KIAA0922 Silent p.L375L 0.37 TCGA-BT-A3PJ-01 4 154669807 154669807 C G RNF175 Missense_Mutation p.R79P 0.18 deleterious(0.01) benign(0.397) TCGA-BT-A3PJ-01 4 155158295 155158295 G C DCHS2 Missense_Mutation p.I2048M 0.46 tolerated(0.16) benign(0.02) TCGA-BT-A3PJ-01 4 155533181 155533181 G A FGG Missense_Mutation p.S99L 0.15 tolerated(0.25) benign(0.001) TCGA-BT-A3PJ-01 4 156723650 156723650 G A GUCY1B3 Missense_Mutation p.M444I 0.10 tolerated(0.27) benign(0.011) TCGA-BT-A3PJ-01 4 159091596 159091596 A G FAM198B Intron 0.34 TCGA-BT-A3PJ-01 4 169374324 169374324 C G DDX60L Missense_Mutation p.R316P 0.46 tolerated(0.08) possibly_damaging(0.813) TCGA-BT-A3PJ-01 4 184607795 184607795 C T TRAPPC11 Missense_Mutation p.A596V 0.31 tolerated(0.11) possibly_damaging(0.787) TCGA-BT-A3PJ-01 4 187206844 187206844 G C F11 Missense_Mutation p.E453Q 0.19 deleterious(0.02) benign(0.306) TCGA-BT-A3PJ-01 4 188924151 188924151 G C ZFP42 Missense_Mutation p.G64R 0.11 tolerated(0.15) benign(0.015) TCGA-BT-A3PJ-01 4 2935298 2935298 G A MFSD10 Silent p.F88F 0.19 TCGA-BT-A3PJ-01 4 39471649 39471649 G A LIAS Missense_Mutation p.D250N 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-BT-A3PJ-01 4 48422313 48422313 C T SLAIN2 Missense_Mutation p.S511L 0.35 tolerated(0.24) benign(0.002) TCGA-BT-A3PJ-01 4 48553580 48553580 C T FRYL Missense_Mutation p.S1484N 0.12 deleterious(0.02) probably_damaging(0.96) TCGA-BT-A3PJ-01 4 53330 53330 G C ZNF595 5'UTR 0.04 TCGA-BT-A3PJ-01 4 55524222 55524222 T G KIT Missense_Mutation p.L14R 0.43 deleterious(0.02) possibly_damaging(0.878) TCGA-BT-A3PJ-01 4 57266984 57266984 G C PPAT Missense_Mutation p.S327C 0.22 deleterious(0) probably_damaging(0.969) TCGA-BT-A3PJ-01 4 6107652 6107652 G A JAKMIP1 Missense_Mutation p.R58C 0.37 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 4 70513304 70513304 C A UGT2A1 Missense_Mutation p.G20V 0.36 tolerated(0.07) benign(0.13) TCGA-BT-A3PJ-01 4 76529105 76529105 T C CDKL2 Missense_Mutation p.K231E 0.16 deleterious(0.01) benign(0.299) TCGA-BT-A3PJ-01 4 77230498 77230498 C T FAM47E-STBD1 Missense_Mutation p.S141L 0.16 tolerated(0.27) benign(0.016) TCGA-BT-A3PJ-01 4 79295384 79295384 C T FRAS1 Missense_Mutation p.H1044Y 0.22 benign(0.001) TCGA-BT-A3PJ-01 4 83740266 83740266 G C SEC31A Silent p.L1208L 0.34 TCGA-BT-A3PJ-01 4 875739 875739 G A GAK Silent p.F539F 0.57 TCGA-BT-A3PJ-01 4 875769 875769 G C GAK Missense_Mutation p.F529L 0.62 deleterious(0.04) possibly_damaging(0.817) TCGA-BT-A3PJ-01 4 87593631 87593631 C T PTPN13 Nonsense_Mutation p.R77* 0.35 TCGA-BT-A3PJ-01 5 127622542 127622542 C G FBN2 Splice_Site p.X2294_splice 0.35 TCGA-BT-A3PJ-01 5 130840372 130840372 C T RAPGEF6 Missense_Mutation p.E401K 0.47 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PJ-01 5 132216652 132216652 C T AFF4 3'UTR 0.42 TCGA-BT-A3PJ-01 5 139741424 139741424 T A SLC4A9 Missense_Mutation p.N203K 0.55 tolerated(0.91) benign(0.063) TCGA-BT-A3PJ-01 5 140476645 140476645 G C PCDHB2 Silent p.L757L 0.34 TCGA-BT-A3PJ-01 5 140734781 140734781 C G PCDHGA4 Missense_Mutation p.P5R 0.40 tolerated_low_confidence(0.64) benign(0.008) TCGA-BT-A3PJ-01 5 141033813 141033813 G A ARAP3 Nonsense_Mutation p.Q1447* 0.44 TCGA-BT-A3PJ-01 5 195402 195402 T G LRRC14B Silent p.A493A 0.10 TCGA-BT-A3PJ-01 5 21459830 21459830 C T GUSBP1 RNA 0.20 TCGA-BT-A3PJ-01 5 33459811 33459811 G A TARS Silent p.R398R 0.52 TCGA-BT-A3PJ-01 5 37324164 37324164 C G NUP155 Missense_Mutation p.E713Q 0.50 tolerated(0.54) benign(0.034) TCGA-BT-A3PJ-01 5 38418241 38418241 G C EGFLAM Missense_Mutation p.R523T 0.12 tolerated(0.09) possibly_damaging(0.857) TCGA-BT-A3PJ-01 5 38869153 38869153 C G OSMR Missense_Mutation p.L3V 0.54 tolerated(0.47) unknown(0) TCGA-BT-A3PJ-01 5 45353208 45353208 C G HCN1 Silent p.L457L 0.09 TCGA-BT-A3PJ-01 5 5464730 5464730 C T KIAA0947 Silent p.A1761A 0.45 TCGA-BT-A3PJ-01 5 61733234 61733234 C T IPO11 Missense_Mutation p.S83L 0.43 tolerated(0.1) possibly_damaging(0.818) TCGA-BT-A3PJ-01 5 74892219 74892219 C G POLK Missense_Mutation p.F567L 0.54 tolerated(0.07) benign(0.325) TCGA-BT-A3PJ-01 5 78915520 78915520 C T PAPD4 Nonsense_Mutation p.Q17* 0.45 TCGA-BT-A3PJ-01 5 79279583 79279583 G A MTX3 Missense_Mutation p.P227L 0.39 tolerated_low_confidence(0.05) benign(0.003) TCGA-BT-A3PJ-01 5 79279590 79279590 G A MTX3 Nonsense_Mutation p.Q225* 0.41 TCGA-BT-A3PJ-01 5 94772582 94772582 C T FAM81B Missense_Mutation p.R289C 0.24 deleterious(0.02) possibly_damaging(0.685) TCGA-BT-A3PJ-01 6 10697685 10697685 G A PAK1IP1 Silent p.K71K 0.06 TCGA-BT-A3PJ-01 6 108202384 108202384 G T SEC63 Missense_Mutation p.T635K 0.37 deleterious(0) probably_damaging(0.909) TCGA-BT-A3PJ-01 6 111913199 111913199 C T TRAF3IP2 Missense_Mutation p.E31K 0.15 tolerated(0.27) benign(0.097) TCGA-BT-A3PJ-01 6 11778996 11778996 G A ADTRP 5'UTR 0.26 TCGA-BT-A3PJ-01 6 129687428 129687428 G C LAMA2 Missense_Mutation p.M1594I 0.24 tolerated(0.16) benign(0.063) TCGA-BT-A3PJ-01 6 137018501 137018501 G C MAP3K5 Silent p.L277L 0.13 TCGA-BT-A3PJ-01 6 149699347 149699347 G T TAB2 Missense_Mutation p.G99V 0.10 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 6 150023160 150023160 G A LATS1 Missense_Mutation p.R35W 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 6 151674198 151674198 G A AKAP12 Missense_Mutation p.V1558I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A3PJ-01 6 152640037 152640037 C T SYNE1 Silent p.A5450A 0.16 TCGA-BT-A3PJ-01 6 155451298 155451298 C T TIAM2 Missense_Mutation p.S314L 0.40 tolerated(0.15) benign(0.002) TCGA-BT-A3PJ-01 6 1612341 1612341 G A FOXC1 Silent p.%3D 0.16 TCGA-BT-A3PJ-01 6 17809073 17809073 C T KIF13A Missense_Mutation p.E697K 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-BT-A3PJ-01 6 27222869 27222869 G A PRSS16 Missense_Mutation p.E479K 0.47 tolerated(0.21) benign(0.216) TCGA-BT-A3PJ-01 6 2900817 2900817 G T SERPINB9 Missense_Mutation p.T10N 0.35 tolerated(0.15) benign(0.182) TCGA-BT-A3PJ-01 6 29974630 29974630 G T ZNRD1-AS1 Intron 0.35 TCGA-BT-A3PJ-01 6 31737803 31737803 G A VWA7 Missense_Mutation p.P392L 0.27 deleterious(0.02) benign(0.356) TCGA-BT-A3PJ-01 6 32086844 32086844 T G ATF6B Missense_Mutation p.K347N 0.41 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 6 32166323 32166323 C T NOTCH4 Missense_Mutation p.G1544D 0.25 tolerated(0.71) benign(0.07) TCGA-BT-A3PJ-01 6 33400506 33400506 G A SYNGAP1 Silent p.T144T 0.28 TCGA-BT-A3PJ-01 6 35288972 35288972 C T DEF6 Missense_Mutation p.P561S 0.39 tolerated(0.14) benign(0.008) TCGA-BT-A3PJ-01 6 35478696 35478696 C G TULP1 Silent p.L147L 0.29 TCGA-BT-A3PJ-01 6 36489566 36489566 C G STK38 Missense_Mutation p.G112A 0.21 deleterious(0.02) probably_damaging(0.988) TCGA-BT-A3PJ-01 6 36887410 36887410 C T C6orf89 Silent p.L301L 0.48 TCGA-BT-A3PJ-01 6 39313505 39313505 C G KIF6 Missense_Mutation p.Q764H 0.42 tolerated(0.41) benign(0.002) TCGA-BT-A3PJ-01 6 39846247 39846247 G A DAAM2 Silent p.K476K 0.44 TCGA-BT-A3PJ-01 6 4021638 4021638 C T PRPF4B 5'UTR 0.28 TCGA-BT-A3PJ-01 6 41057404 41057404 C T NFYA Silent p.I132I 0.41 TCGA-BT-A3PJ-01 6 44119725 44119725 G A TMEM63B Missense_Mutation p.E606K 0.33 deleterious(0) possibly_damaging(0.627) TCGA-BT-A3PJ-01 6 46660819 46660819 G C TDRD6 Missense_Mutation p.D1652H 0.19 deleterious(0) probably_damaging(0.984) TCGA-BT-A3PJ-01 6 46678299 46678299 C T PLA2G7 Missense_Mutation p.D254N 0.54 deleterious(0.04) benign(0.239) TCGA-BT-A3PJ-01 6 46766860 46766860 G A MEP1A Silent p.L68L 0.25 TCGA-BT-A3PJ-01 6 52344529 52344529 C T EFHC1 Silent p.L528L 0.40 TCGA-BT-A3PJ-01 6 53883760 53883760 C G MLIP 5'UTR 0.27 TCGA-BT-A3PJ-01 6 56497803 56497803 T A DST Missense_Mutation p.Q681H 0.40 possibly_damaging(0.851) TCGA-BT-A3PJ-01 6 56955033 56955033 C T ZNF451 5'UTR 0.40 TCGA-BT-A3PJ-01 6 57015563 57015563 G A ZNF451 Missense_Mutation p.M885I 0.27 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-BT-A3PJ-01 6 7247274 7247274 G A RREB1 Missense_Mutation p.D1531N 0.10 tolerated(0.08) possibly_damaging(0.871) TCGA-BT-A3PJ-01 6 75799843 75799843 C T COL12A1 Missense_Mutation p.G2975E 0.34 probably_damaging(1) TCGA-BT-A3PJ-01 6 86223790 86223790 C G SNX14 Missense_Mutation p.R852T 0.48 deleterious(0) probably_damaging(0.982) TCGA-BT-A3PJ-01 6 90647877 90647877 C T BACH2 Missense_Mutation p.E677K 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-BT-A3PJ-01 6 99823966 99823966 G A COQ3 Silent p.V193V 0.20 TCGA-BT-A3PJ-01 7 100485992 100485992 A C SRRT Missense_Mutation p.K848T 0.48 tolerated(0.09) probably_damaging(0.995) TCGA-BT-A3PJ-01 7 107746973 107746973 A C LAMB4 Silent p.P212P 0.58 TCGA-BT-A3PJ-01 7 137798473 137798473 A G AKR1D1 Missense_Mutation p.D298G 0.38 tolerated(0.15) benign(0.001) TCGA-BT-A3PJ-01 7 142124340 142124340 C T TRBV6-8 Missense_Mutation p.M46I 0.59 tolerated(0.06) benign(0.137) TCGA-BT-A3PJ-01 7 143079495 143079495 G A ZYX Silent p.P121P 0.44 TCGA-BT-A3PJ-01 7 151896487 151896487 C T KMT2C Missense_Mutation p.D1384N 0.52 benign(0.142) TCGA-BT-A3PJ-01 7 2311494 2311494 G A SNX8 Silent p.F177F 0.33 TCGA-BT-A3PJ-01 7 31682389 31682389 C T CCDC129 Nonsense_Mutation p.Q495* 0.09 TCGA-BT-A3PJ-01 7 37990006 37990006 C T EPDR1 3'UTR 0.13 TCGA-BT-A3PJ-01 7 4189070 4189070 G A SDK1 Missense_Mutation p.E1534K 0.46 tolerated(0.33) benign(0.184) TCGA-BT-A3PJ-01 7 43908565 43908565 T C MRPS24 Missense_Mutation p.T73A 0.43 deleterious(0.04) benign(0.429) TCGA-BT-A3PJ-01 7 47886526 47886526 C T PKD1L1 Missense_Mutation p.E1702K 0.29 tolerated(0.21) benign(0.277) TCGA-BT-A3PJ-01 7 49815164 49815164 C G VWC2 Missense_Mutation p.Q45E 0.60 tolerated_low_confidence(0.36) possibly_damaging(0.708) TCGA-BT-A3PJ-01 7 55874908 55874908 C A SEPT14 Missense_Mutation p.M287I 0.05 deleterious(0.02) benign(0.015) TCGA-BT-A3PJ-01 7 56022758 56022758 C T MRPS17 Missense_Mutation p.P94S 0.24 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 7 65557924 65557924 A G ASL 3'UTR 0.50 TCGA-BT-A3PJ-01 7 99917593 99917593 G A SPDYE3 Missense_Mutation p.D544N 0.54 deleterious(0.04) possibly_damaging(0.626) TCGA-BT-A3PJ-01 7 99954465 99954465 C A PILRB 5'UTR 0.67 TCGA-BT-A3PJ-01 8 104337528 104337528 A C FZD6 Missense_Mutation p.Q398H 0.26 deleterious(0.03) probably_damaging(1) TCGA-BT-A3PJ-01 8 10473953 10473953 C G RP1L1 Intron 0.22 TCGA-BT-A3PJ-01 8 110984991 110984991 C G KCNV1 Missense_Mutation p.E163Q 0.42 tolerated(0.18) benign(0.026) TCGA-BT-A3PJ-01 8 113304838 113304838 G A CSMD3 Missense_Mutation p.L2906F 0.24 tolerated(0.29) benign(0.094) TCGA-BT-A3PJ-01 8 113363413 113363413 T C CSMD3 Missense_Mutation p.I2106V 0.15 deleterious(0.05) benign(0.243) TCGA-BT-A3PJ-01 8 117864827 117864827 C A RAD21 Nonsense_Mutation p.E428* 0.12 TCGA-BT-A3PJ-01 8 133899037 133899037 G C TG Missense_Mutation p.G474R 0.40 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PJ-01 8 145947530 145947530 A C ZNF251 Missense_Mutation p.I505M 0.48 tolerated(0.14) benign(0) TCGA-BT-A3PJ-01 8 18729886 18729886 C T PSD3 Missense_Mutation p.S163N 0.20 tolerated_low_confidence(0.59) benign(0.001) TCGA-BT-A3PJ-01 8 27737165 27737165 C T SCARA5 Silent p.K424K 0.21 TCGA-BT-A3PJ-01 8 3224564 3224564 G T CSMD1 Silent p.I1035I 0.14 TCGA-BT-A3PJ-01 8 43053085 43053085 C G HGSNAT Missense_Mutation p.F572L 0.14 tolerated(0.05) benign(0.265) TCGA-BT-A3PJ-01 8 61754499 61754499 G A CHD7 Missense_Mutation p.E1580K 0.23 probably_damaging(0.986) TCGA-BT-A3PJ-01 8 65494338 65494338 G A BHLHE22 Missense_Mutation p.A331T 0.40 tolerated_low_confidence(0.15) possibly_damaging(0.803) TCGA-BT-A3PJ-01 8 67341274 67341274 T A RRS1 5'UTR 0.46 TCGA-BT-A3PJ-01 8 67525183 67525183 C G MYBL1 5'UTR 0.26 TCGA-BT-A3PJ-01 8 71510491 71510491 C T TRAM1 Splice_Site p.X63_splice 0.25 TCGA-BT-A3PJ-01 8 82395441 82395441 G A FABP4 5'UTR 0.14 TCGA-BT-A3PJ-01 8 92972460 92972460 G T RUNX1T1 3'UTR 0.27 TCGA-BT-A3PJ-01 8 95547204 95547204 C T KIAA1429 Nonsense_Mutation p.W116* 0.20 TCGA-BT-A3PJ-01 9 104032211 104032211 C A LPPR1 Missense_Mutation p.T38N 0.20 deleterious(0) probably_damaging(0.994) TCGA-BT-A3PJ-01 9 109688717 109688717 C A ZNF462 Missense_Mutation p.L842I 0.39 probably_damaging(0.99) TCGA-BT-A3PJ-01 9 112225592 112225592 C T PTPN3 Silent p.Q41Q 0.35 TCGA-BT-A3PJ-01 9 115142414 115142414 C T HSDL2 5'UTR 0.33 TCGA-BT-A3PJ-01 9 117568272 117568272 C T TNFSF15 Silent p.L7L 0.34 TCGA-BT-A3PJ-01 9 118182 118182 G A FOXD4 5'UTR 0.13 TCGA-BT-A3PJ-01 9 118197 118197 G A FOXD4 5'UTR 0.17 TCGA-BT-A3PJ-01 9 127456044 127456044 C T NR6A1 Intron 0.15 TCGA-BT-A3PJ-01 9 127990287 127990287 G A RABEPK Missense_Mutation p.G209R 0.12 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 9 128074826 128074826 G C GAPVD1 Missense_Mutation p.E513Q 0.40 tolerated(0.05) probably_damaging(0.997) TCGA-BT-A3PJ-01 9 130119513 130119513 G T GARNL3 Missense_Mutation p.D651Y 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 9 132404315 132404315 C T ASB6 5'UTR 0.27 TCGA-BT-A3PJ-01 9 134026030 134026030 G A NUP214 Missense_Mutation p.E719K 0.16 benign(0.261) TCGA-BT-A3PJ-01 9 134026095 134026095 G A NUP214 Silent p.L740L 0.22 TCGA-BT-A3PJ-01 9 135139634 135139634 G A SETX Missense_Mutation p.L2676F 0.41 tolerated_low_confidence(0.29) benign(0.025) TCGA-BT-A3PJ-01 9 136444273 136444273 C G FAM163B Missense_Mutation p.K124N 0.14 tolerated(0.31) benign(0.049) TCGA-BT-A3PJ-01 9 136804268 136804268 A G VAV2 Missense_Mutation p.L93P 0.41 deleterious(0) probably_damaging(1) TCGA-BT-A3PJ-01 9 138376899 138376899 C T PPP1R26 Silent p.A181A 0.19 TCGA-BT-A3PJ-01 9 138713796 138713796 G A CAMSAP1 Missense_Mutation p.A904V 0.36 deleterious(0) probably_damaging(0.978) TCGA-BT-A3PJ-01 9 139981500 139981500 T A MAN1B1 Missense_Mutation p.S17T 0.65 tolerated_low_confidence(0.31) benign(0.004) TCGA-BT-A3PJ-01 9 140878605 140878605 G A CACNA1B Missense_Mutation p.V558I 0.29 tolerated(1) benign(0.001) TCGA-BT-A3PJ-01 9 14740152 14740152 C G FREM1 Missense_Mutation p.W2112S 0.15 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 9 2159835 2159835 C G SMARCA2 Intron 0.60 TCGA-BT-A3PJ-01 9 35059694 35059694 G A VCP Silent p.V600V 0.51 TCGA-BT-A3PJ-01 9 37861326 37861326 G A DCAF10 Missense_Mutation p.D501N 0.22 tolerated(0.38) possibly_damaging(0.472) TCGA-BT-A3PJ-01 9 71395443 71395443 C T FAM122A Silent p.F121F 0.39 TCGA-BT-A3PJ-01 9 72091005 72091005 G C APBA1 Missense_Mutation p.L419V 0.22 tolerated_low_confidence(0.43) benign(0.05) TCGA-BT-A3PJ-01 9 86917263 86917263 G A SLC28A3 Missense_Mutation p.H126Y 0.24 deleterious(0.02) benign(0.021) TCGA-BT-A3PJ-01 9 91150578 91150578 C T NXNL2 Nonsense_Mutation p.Q77* 0.36 TCGA-BT-A3PJ-01 9 96212868 96212868 C A FAM120AOS Nonsense_Mutation p.G193* 0.21 TCGA-BT-A3PJ-01 9 97041083 97041083 G A ZNF169 5'UTR 0.08 TCGA-BT-A3PJ-01 9 97844896 97844896 G A C9orf3 Missense_Mutation p.E787K 0.38 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PJ-01 9 98660185 98660185 G C ERCC6L2 Missense_Mutation p.E187Q 0.24 tolerated(0.06) possibly_damaging(0.734) TCGA-BT-A3PJ-01 9 99691320 99691320 G C NUTM2G Missense_Mutation p.G5A 0.44 tolerated(0.2) possibly_damaging(0.835) TCGA-BT-A3PJ-01 X 107335045 107335045 G A ATG4A 5'UTR 0.74 TCGA-BT-A3PJ-01 X 112033995 112033995 G A AMOT Nonsense_Mutation p.Q648* 0.57 TCGA-BT-A3PJ-01 X 134709105 134709105 C T DDX26B Missense_Mutation p.P576L 0.69 deleterious(0) probably_damaging(0.987) TCGA-BT-A3PJ-01 X 150911821 150911821 C T CNGA2 Silent p.I282I 0.64 TCGA-BT-A3PJ-01 X 153069709 153069709 G A PDZD4 Missense_Mutation p.A470V 0.69 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PJ-01 X 37312442 37312442 A T PRRG1 Silent p.G75G 0.75 TCGA-BT-A3PJ-01 X 49079027 49079027 C T CACNA1F Missense_Mutation p.D759N 0.60 deleterious(0.01) probably_damaging(1) TCGA-BT-A3PJ-01 X 71792545 71792545 C T HDAC8 Missense_Mutation p.E23K 0.62 tolerated(0.39) benign(0.058) TCGA-BT-A3PJ-01 X 99661763 99661763 G A PCDH19 Silent p.D611D 0.11 TCGA-BT-A3PK-01 10 101542562 101542562 T C ABCC2 5'UTR 0.15 TCGA-BT-A3PK-01 10 24822144 24822144 A G KIAA1217 Missense_Mutation p.D1131G 0.11 deleterious(0.02) possibly_damaging(0.874) TCGA-BT-A3PK-01 10 27703135 27703135 C T PTCHD3 Silent p.K15K 0.16 TCGA-BT-A3PK-01 10 45430459 45430459 C T TMEM72 Silent p.L235L 0.05 TCGA-BT-A3PK-01 10 50957813 50957813 T A OGDHL Missense_Mutation p.I316F 0.11 deleterious(0) probably_damaging(0.976) TCGA-BT-A3PK-01 10 63850916 63850916 C T ARID5B Missense_Mutation p.T565I 0.18 tolerated(0.17) benign(0.063) TCGA-BT-A3PK-01 10 64573654 64573654 G C EGR2 Silent p.P248P 0.14 TCGA-BT-A3PK-01 10 64575748 64575748 G A EGR2 Silent p.L14L 0.06 TCGA-BT-A3PK-01 10 65369972 65369972 T G REEP3 Nonsense_Mutation p.L148* 0.21 TCGA-BT-A3PK-01 10 70182518 70182518 G A DNA2 Missense_Mutation p.R866W 0.25 deleterious(0) possibly_damaging(0.84) TCGA-BT-A3PK-01 10 75407279 75407279 G C SYNPO2L Missense_Mutation p.P711A 0.20 tolerated(0.11) benign(0.242) TCGA-BT-A3PK-01 10 87362131 87362131 G A GRID1 Missense_Mutation p.R977W 0.18 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-BT-A3PK-01 11 102100657 102100657 C T YAP1 Missense_Mutation p.L501F 0.13 deleterious(0) probably_damaging(0.98) TCGA-BT-A3PK-01 11 103055726 103055726 A G DYNC2H1 Missense_Mutation p.I2193M 0.28 benign(0.135) TCGA-BT-A3PK-01 11 103270433 103270433 C T DYNC2H1 Nonsense_Mutation p.R4074* 0.28 TCGA-BT-A3PK-01 11 108122629 108122629 G T ATM Missense_Mutation p.G558V 0.15 deleterious(0) benign(0.424) TCGA-BT-A3PK-01 11 108201015 108201015 G C ATM Missense_Mutation p.R2461P 0.19 deleterious(0.01) possibly_damaging(0.699) TCGA-BT-A3PK-01 11 122953891 122953891 A G CLMP Missense_Mutation p.L194P 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-BT-A3PK-01 11 125547901 125547901 G A ACRV1 Missense_Mutation p.S115L 0.06 deleterious(0.03) benign(0.059) TCGA-BT-A3PK-01 11 12901332 12901332 T A TEAD1 Silent p.I136I 0.04 TCGA-BT-A3PK-01 11 18591868 18591868 G C UEVLD Missense_Mutation p.P84A 0.05 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 11 3746382 3746382 C T NUP98 Missense_Mutation p.D600N 0.10 tolerated(0.12) possibly_damaging(0.574) TCGA-BT-A3PK-01 11 44075044 44075044 A C ACCSL Missense_Mutation p.E346A 0.11 deleterious(0.02) possibly_damaging(0.622) TCGA-BT-A3PK-01 11 4470668 4470668 C G OR52K2 Missense_Mutation p.F33L 0.14 deleterious(0.02) possibly_damaging(0.685) TCGA-BT-A3PK-01 11 46397494 46397494 G T DGKZ Missense_Mutation p.K856N 0.15 deleterious(0.01) possibly_damaging(0.48) TCGA-BT-A3PK-01 11 4936857 4936857 C T OR51G2 Missense_Mutation p.V13I 0.18 tolerated(0.35) unknown(0) TCGA-BT-A3PK-01 11 55872742 55872742 C G OR8H2 Nonsense_Mutation p.S75* 0.04 TCGA-BT-A3PK-01 11 55873336 55873336 T C OR8H2 Missense_Mutation p.V273A 0.14 deleterious(0.01) benign(0.443) TCGA-BT-A3PK-01 11 57995840 57995840 G T OR10Q1 Missense_Mutation p.L170M 0.09 deleterious(0.04) probably_damaging(0.993) TCGA-BT-A3PK-01 11 60671181 60671181 C T PRPF19 Intron 0.25 TCGA-BT-A3PK-01 11 61196738 61196738 G A CPSF7 Silent p.I33I 0.04 TCGA-BT-A3PK-01 11 62291760 62291760 C G AHNAK Missense_Mutation p.D3377H 0.08 probably_damaging(1) TCGA-BT-A3PK-01 11 62292043 62292043 C G AHNAK Missense_Mutation p.K3282N 0.05 probably_damaging(0.999) TCGA-BT-A3PK-01 11 62292768 62292768 C G AHNAK Missense_Mutation p.D3041H 0.06 probably_damaging(0.94) TCGA-BT-A3PK-01 11 62292797 62292797 C G AHNAK Missense_Mutation p.S3031T 0.07 possibly_damaging(0.467) TCGA-BT-A3PK-01 11 62294178 62294178 C G AHNAK Missense_Mutation p.E2571Q 0.07 possibly_damaging(0.607) TCGA-BT-A3PK-01 11 62434192 62434192 C T METTL12 Missense_Mutation p.P131L 0.14 deleterious(0.01) probably_damaging(0.955) TCGA-BT-A3PK-01 11 62521022 62521022 G C ZBTB3 Missense_Mutation p.R89G 0.13 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 11 64081725 64081725 C G ESRRA Missense_Mutation p.R153G 0.11 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PK-01 11 65271270 65271270 G T MALAT1 RNA 0.14 TCGA-BT-A3PK-01 11 65272851 65272851 C T MALAT1 RNA 0.20 TCGA-BT-A3PK-01 11 66133943 66133943 G C SLC29A2 Missense_Mutation p.Q276E 0.15 tolerated(1) benign(0.002) TCGA-BT-A3PK-01 11 66571581 66571581 C A C11orf80 Missense_Mutation p.L320M 0.20 deleterious(0.04) probably_damaging(0.934) TCGA-BT-A3PK-01 11 72069953 72069953 T C CLPB Missense_Mutation p.Y279C 0.07 tolerated(0.14) benign(0.149) TCGA-BT-A3PK-01 11 74422031 74422031 G C CHRDL2 Missense_Mutation p.H99D 0.11 deleterious(0.03) possibly_damaging(0.614) TCGA-BT-A3PK-01 11 85989355 85989355 C G EED Intron 0.07 TCGA-BT-A3PK-01 11 94910950 94910950 C T SESN3 Missense_Mutation p.E394K 0.12 tolerated(1) probably_damaging(0.998) TCGA-BT-A3PK-01 12 101295535 101295535 C G ANO4 5'UTR 0.03 TCGA-BT-A3PK-01 12 102589201 102589201 C T PARPBP Missense_Mutation p.L459F 0.09 tolerated(0.71) benign(0.052) TCGA-BT-A3PK-01 12 117696896 117696896 G C NOS1 Missense_Mutation p.H803D 0.08 deleterious(0.02) possibly_damaging(0.88) TCGA-BT-A3PK-01 12 120875952 120875952 C T COX6A1 Missense_Mutation p.S8L 0.16 tolerated(0.57) unknown(0) TCGA-BT-A3PK-01 12 121454163 121454163 G A C12orf43 Missense_Mutation p.R39C 0.15 tolerated(0.07) possibly_damaging(0.736) TCGA-BT-A3PK-01 12 123087591 123087591 G A KNTC1 Silent p.L1634L 0.10 TCGA-BT-A3PK-01 12 19427653 19427653 T A PLEKHA5 Missense_Mutation p.V350E 0.15 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PK-01 12 21069277 21069277 G C SLCO1B3 3'UTR 0.16 TCGA-BT-A3PK-01 12 25148970 25148970 G C C12orf77 Missense_Mutation p.L60V 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-BT-A3PK-01 12 26647234 26647234 G A ITPR2 Missense_Mutation p.S1741L 0.21 deleterious(0) benign(0) TCGA-BT-A3PK-01 12 27135731 27135731 G C TM7SF3 Missense_Mutation p.F310L 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-BT-A3PK-01 12 31446847 31446847 C T FAM60A Missense_Mutation p.G83R 0.12 deleterious(0) benign(0.175) TCGA-BT-A3PK-01 12 431654 431654 C T KDM5A Silent p.R785R 0.09 TCGA-BT-A3PK-01 12 49390950 49390950 T C DDN Missense_Mutation p.H570R 0.10 tolerated_low_confidence(0.36) benign(0.003) TCGA-BT-A3PK-01 12 49433004 49433004 C A KMT2D Splice_Site p.X2789_splice 0.16 TCGA-BT-A3PK-01 12 49446821 49446821 G C KMT2D Nonsense_Mutation p.S330* 0.04 TCGA-BT-A3PK-01 12 51318851 51318851 G C METTL7A Silent p.L10L 0.15 TCGA-BT-A3PK-01 12 51865155 51865155 T C SLC4A8 Silent p.D581D 0.17 TCGA-BT-A3PK-01 12 53775912 53775912 T G SP1 Missense_Mutation p.L61V 0.17 deleterious(0.01) possibly_damaging(0.636) TCGA-BT-A3PK-01 12 54675607 54675607 C G HNRNPA1 Missense_Mutation p.S54C 0.17 deleterious(0.02) possibly_damaging(0.69) TCGA-BT-A3PK-01 12 57850077 57850077 G A INHBE Missense_Mutation p.G167S 0.20 deleterious(0.04) probably_damaging(1) TCGA-BT-A3PK-01 12 64195998 64195998 A C TMEM5 Missense_Mutation p.N186H 0.06 tolerated(0.2) benign(0.06) TCGA-BT-A3PK-01 12 66605244 66605244 C G IRAK3 Missense_Mutation p.S152C 0.11 tolerated(0.1) benign(0.048) TCGA-BT-A3PK-01 12 71139613 71139613 A G PTPRR Missense_Mutation p.I331T 0.09 tolerated(0.07) benign(0.066) TCGA-BT-A3PK-01 12 72667281 72667281 C G TRHDE Missense_Mutation p.I241M 0.16 deleterious(0) probably_damaging(0.988) TCGA-BT-A3PK-01 12 75784898 75784898 T C GLIPR1L2 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-BT-A3PK-01 12 80613677 80613677 A G OTOGL Missense_Mutation p.T98A 0.20 tolerated(0.15) benign(0.236) TCGA-BT-A3PK-01 12 85459088 85459088 C T LRRIQ1 Silent p.L814L 0.17 TCGA-BT-A3PK-01 12 95926706 95926706 C T USP44 Missense_Mutation p.G443S 0.15 deleterious(0.05) benign(0.12) TCGA-BT-A3PK-01 12 96370219 96370219 G A HAL Silent p.L607L 0.16 TCGA-BT-A3PK-01 12 98926631 98926631 C G TMPO Missense_Mutation p.S199C 0.05 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BT-A3PK-01 12 99076995 99076995 C T APAF1 Silent p.F707F 0.09 TCGA-BT-A3PK-01 13 100425084 100425084 G A CLYBL Silent p.A23A 0.15 TCGA-BT-A3PK-01 13 108922324 108922324 T G TNFSF13B Missense_Mutation p.C27W 0.05 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-BT-A3PK-01 13 108922325 108922325 G A TNFSF13B Missense_Mutation p.V28I 0.05 tolerated_low_confidence(0.17) benign(0.001) TCGA-BT-A3PK-01 13 109672259 109672259 G A MYO16 Silent p.R910R 0.12 TCGA-BT-A3PK-01 13 38924164 38924164 A T UFM1 Missense_Mutation p.T11S 0.12 deleterious_low_confidence(0) possibly_damaging(0.527) TCGA-BT-A3PK-01 13 39446912 39446912 C T FREM2 Nonsense_Mutation p.R2673* 0.19 TCGA-BT-A3PK-01 13 42876351 42876351 A G AKAP11 Missense_Mutation p.I1157V 0.04 tolerated(0.12) possibly_damaging(0.814) TCGA-BT-A3PK-01 13 49064303 49064303 C T RCBTB2 Missense_Mutation p.D534N 0.06 tolerated(0.68) possibly_damaging(0.798) TCGA-BT-A3PK-01 13 70535552 70535552 G T KLHL1 Missense_Mutation p.D235E 0.14 tolerated(0.3) possibly_damaging(0.498) TCGA-BT-A3PK-01 13 73305498 73305498 G C BORA Missense_Mutation p.R78P 0.05 deleterious(0) probably_damaging(0.98) TCGA-BT-A3PK-01 13 76397778 76397778 A G LMO7 Silent p.A673A 0.20 TCGA-BT-A3PK-01 13 78477304 78477304 G A EDNRB Missense_Mutation p.T353I 0.14 deleterious(0.02) benign(0.085) TCGA-BT-A3PK-01 14 102904529 102904529 A G TECPR2 Silent p.A855A 0.14 TCGA-BT-A3PK-01 14 103390133 103390133 C A AMN Nonsense_Mutation p.C43* 0.16 TCGA-BT-A3PK-01 14 107083645 107083645 G A IGHV4-59 Missense_Mutation p.P14L 0.09 deleterious_low_confidence(0.04) probably_damaging(0.921) TCGA-BT-A3PK-01 14 21870182 21870182 C T CHD8 Silent p.Q1332Q 0.07 TCGA-BT-A3PK-01 14 21870572 21870572 C G CHD8 Missense_Mutation p.D1269H 0.05 deleterious(0) benign(0.425) TCGA-BT-A3PK-01 14 22251588 22251588 T C TRAV7 Silent p.L69L 0.15 TCGA-BT-A3PK-01 14 24588376 24588376 G C DCAF11 Missense_Mutation p.V268L 0.10 tolerated(0.05) benign(0.084) TCGA-BT-A3PK-01 14 55529993 55529993 C T MAPK1IP1L Nonsense_Mutation p.Q226* 0.07 TCGA-BT-A3PK-01 14 63174336 63174336 G C KCNH5 Missense_Mutation p.P953A 0.08 deleterious_low_confidence(0.01) benign(0.005) TCGA-BT-A3PK-01 14 63174651 63174651 C G KCNH5 Missense_Mutation p.D848H 0.10 tolerated_low_confidence(0.05) benign(0.365) TCGA-BT-A3PK-01 14 66208906 66208906 G C FUT8 Missense_Mutation p.Q502H 0.04 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PK-01 14 68040539 68040539 C T PLEKHH1 Nonsense_Mutation p.Q621* 0.05 TCGA-BT-A3PK-01 14 68040602 68040602 C G PLEKHH1 Missense_Mutation p.Q642E 0.07 tolerated(0.31) possibly_damaging(0.678) TCGA-BT-A3PK-01 14 77255678 77255678 G A ANGEL1 Missense_Mutation p.L636F 0.08 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 14 81743987 81743987 T C STON2 Silent p.S556S 0.12 TCGA-BT-A3PK-01 14 81950697 81950697 C A SEL1L Missense_Mutation p.G640W 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 14 88883148 88883148 A G SPATA7 Missense_Mutation p.Y111C 0.09 deleterious(0.01) possibly_damaging(0.482) TCGA-BT-A3PK-01 14 89044449 89044449 A G ZC3H14 Missense_Mutation p.E415G 0.05 tolerated(0.06) benign(0.182) TCGA-BT-A3PK-01 14 94731721 94731721 T C PPP4R4 Intron 0.09 TCGA-BT-A3PK-01 14 96998956 96998956 T C PAPOLA Missense_Mutation p.V269A 0.08 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PK-01 15 23003016 23003016 C G CYFIP1 Missense_Mutation p.I1246M 0.11 tolerated(0.08) probably_damaging(0.942) TCGA-BT-A3PK-01 15 25200177 25200177 A G SNURF 5'UTR 0.19 TCGA-BT-A3PK-01 15 27725973 27725973 G A GABRG3 Intron 0.11 TCGA-BT-A3PK-01 15 34640674 34640674 C T NUTM1 Missense_Mutation p.P174L 0.10 deleterious(0.02) possibly_damaging(0.507) TCGA-BT-A3PK-01 15 35275416 35275416 G A ZNF770 Nonsense_Mutation p.Q74* 0.14 TCGA-BT-A3PK-01 15 40917631 40917631 C T CASC5 Silent p.I1749I 0.11 TCGA-BT-A3PK-01 15 41347486 41347486 T A INO80 Missense_Mutation p.D716V 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 15 41482170 41482170 G T EXD1 Missense_Mutation p.R283S 0.04 deleterious(0.02) possibly_damaging(0.765) TCGA-BT-A3PK-01 15 42171661 42171661 G C SPTBN5 Silent p.A993A 0.40 TCGA-BT-A3PK-01 15 48725087 48725087 T C FBN1 Missense_Mutation p.R2239G 0.15 probably_damaging(0.999) TCGA-BT-A3PK-01 15 48773879 48773879 C G FBN1 Missense_Mutation p.G1313R 0.09 probably_damaging(0.973) TCGA-BT-A3PK-01 15 50474578 50474578 G A SLC27A2 5'UTR 0.31 TCGA-BT-A3PK-01 15 51514603 51514603 G A CYP19A1 Silent p.L191L 0.07 TCGA-BT-A3PK-01 15 51792343 51792343 G C DMXL2 Missense_Mutation p.F1026L 0.04 deleterious(0) probably_damaging(0.995) TCGA-BT-A3PK-01 15 58855759 58855759 G C LIPC Missense_Mutation p.D409H 0.04 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PK-01 15 62167121 62167121 T C VPS13C Silent p.A3456A 0.17 TCGA-BT-A3PK-01 15 63032843 63032843 G C TLN2 Missense_Mutation p.Q1300H 0.16 tolerated(0.06) benign(0.015) TCGA-BT-A3PK-01 15 66021464 66021464 T C DENND4A Missense_Mutation p.Y478C 0.21 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PK-01 15 66172008 66172008 G A RAB11A Splice_Site p.X144_splice 0.05 TCGA-BT-A3PK-01 15 78475048 78475048 G A ACSBG1 Missense_Mutation p.T248M 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-BT-A3PK-01 15 82575106 82575106 T C FAM154B Silent p.I300I 0.18 TCGA-BT-A3PK-01 15 84651116 84651116 G T ADAMTSL3 Missense_Mutation p.K912N 0.07 deleterious(0) probably_damaging(0.959) TCGA-BT-A3PK-01 15 84651605 84651605 G A ADAMTSL3 Silent p.L1075L 0.07 TCGA-BT-A3PK-01 15 86702233 86702233 C A AGBL1 Missense_Mutation p.T109N 0.15 deleterious(0.01) possibly_damaging(0.548) TCGA-BT-A3PK-01 15 88679230 88679230 C G NTRK3 Silent p.T269T 0.09 TCGA-BT-A3PK-01 15 93496669 93496669 C A CHD2 Missense_Mutation p.Q529K 0.17 tolerated(0.47) benign(0.095) TCGA-BT-A3PK-01 16 10524885 10524885 T G ATF7IP2 Missense_Mutation p.D136E 0.21 tolerated(0.3) benign(0.054) TCGA-BT-A3PK-01 16 15728731 15728731 T A KIAA0430 Missense_Mutation p.N297Y 0.03 tolerated_low_confidence(0.16) possibly_damaging(0.776) TCGA-BT-A3PK-01 16 20975225 20975225 A G DNAH3 Silent p.N3327N 0.07 TCGA-BT-A3PK-01 16 21273477 21273477 C G CRYM Missense_Mutation p.V226L 0.10 deleterious(0.01) possibly_damaging(0.455) TCGA-BT-A3PK-01 16 28919983 28919983 G A RABEP2 Nonsense_Mutation p.Q398* 0.09 TCGA-BT-A3PK-01 16 30365608 30365608 C T CD2BP2 Silent p.G38G 0.07 TCGA-BT-A3PK-01 16 3189016 3189016 G C ZNF213 Missense_Mutation p.R213P 0.06 tolerated(0.05) possibly_damaging(0.613) TCGA-BT-A3PK-01 16 51171247 51171247 C T SALL1 Missense_Mutation p.E1251K 0.11 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PK-01 16 53636095 53636095 C G RPGRIP1L Missense_Mutation p.D1281H 0.09 deleterious(0) probably_damaging(0.933) TCGA-BT-A3PK-01 16 54966323 54966323 G A IRX5 Intron 0.20 TCGA-BT-A3PK-01 16 55360337 55360337 C G IRX6 Silent p.P45P 0.10 TCGA-BT-A3PK-01 16 55362966 55362966 C T IRX6 Missense_Mutation p.T359I 0.12 deleterious(0) benign(0.004) TCGA-BT-A3PK-01 16 57103764 57103764 G T NLRC5 Missense_Mutation p.V1506L 0.24 tolerated(0.09) benign(0.175) TCGA-BT-A3PK-01 16 67576933 67576933 G T FAM65A Silent p.T768T 0.20 TCGA-BT-A3PK-01 17 12888211 12888211 A - ARHGAP44 Frame_Shift_Del p.S769Afs*16 0.18 TCGA-BT-A3PK-01 17 15952254 15952254 G C NCOR1 Nonsense_Mutation p.Y2147* 0.15 TCGA-BT-A3PK-01 17 19284405 19284405 C A MAPK7 Silent p.R295R 0.11 TCGA-BT-A3PK-01 17 2221250 2221250 A C SRR Silent p.G85G 0.15 TCGA-BT-A3PK-01 17 32582362 32582362 C A CCL2 5'UTR 0.15 TCGA-BT-A3PK-01 17 33806548 33806548 G C SLFN12L Missense_Mutation p.F227L 0.06 deleterious(0.03) probably_damaging(0.911) TCGA-BT-A3PK-01 17 38346912 38346912 C T RAPGEFL1 Silent p.I205I 0.20 TCGA-BT-A3PK-01 17 42462686 42462686 A T ITGA2B Missense_Mutation p.C198S 0.09 deleterious(0) probably_damaging(0.917) TCGA-BT-A3PK-01 17 45891068 45891068 G A OSBPL7 Missense_Mutation p.S495L 0.07 deleterious(0) probably_damaging(0.965) TCGA-BT-A3PK-01 17 4700748 4700748 T A PSMB6 Missense_Mutation p.N62K 0.16 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 17 47784399 47784399 G T SLC35B1 Missense_Mutation p.Q46K 0.12 tolerated(1) benign(0.006) TCGA-BT-A3PK-01 17 48752728 48752728 G A ABCC3 Missense_Mutation p.E869K 0.05 tolerated(0.37) benign(0.15) TCGA-BT-A3PK-01 17 55062817 55062817 A G SCPEP1 Missense_Mutation p.K102E 0.04 tolerated(0.15) benign(0.014) TCGA-BT-A3PK-01 17 60470976 60470976 C G EFCAB3 Missense_Mutation p.T165R 0.19 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PK-01 17 61662585 61662585 G C DCAF7 Missense_Mutation p.D51H 0.05 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 17 62007656 62007656 C T CD79B Missense_Mutation p.A71T 0.07 tolerated(0.6) benign(0) TCGA-BT-A3PK-01 17 64637500 64637500 A T PRKCA Missense_Mutation p.I106F 0.19 deleterious(0.04) possibly_damaging(0.774) TCGA-BT-A3PK-01 17 72860379 72860379 G A FDXR Missense_Mutation p.S341L 0.16 tolerated(0.22) benign(0.005) TCGA-BT-A3PK-01 17 73239236 73239236 A T GGA3 Missense_Mutation p.S146T 0.11 tolerated(0.34) benign(0.001) TCGA-BT-A3PK-01 17 73919617 73919617 G T FBF1 Missense_Mutation p.D343E 0.26 tolerated(0.06) benign(0.062) TCGA-BT-A3PK-01 17 74066468 74066468 T C SRP68 Missense_Mutation p.Q81R 0.12 deleterious(0.02) benign(0.178) TCGA-BT-A3PK-01 17 79848597 79848597 G C ALYREF Missense_Mutation p.L120V 0.04 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 18 12326037 12326037 G A TUBB6 Missense_Mutation p.D417N 0.04 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-BT-A3PK-01 18 19321721 19321721 C T MIB1 Silent p.N59N 0.13 TCGA-BT-A3PK-01 18 28581659 28581659 C G DSC3 Silent p.G720G 0.13 TCGA-BT-A3PK-01 18 29049227 29049227 T G DSG3 Silent p.P604P 0.07 TCGA-BT-A3PK-01 18 31538215 31538215 C T NOL4 Silent p.L408L 0.19 TCGA-BT-A3PK-01 18 3187533 3187533 C A MYOM1 Nonsense_Mutation p.E292* 0.05 TCGA-BT-A3PK-01 18 39623694 39623694 C A PIK3C3 Intron 0.10 TCGA-BT-A3PK-01 18 46146081 46146081 G A CTIF Missense_Mutation p.G49S 0.13 tolerated_low_confidence(0.26) benign(0.376) TCGA-BT-A3PK-01 18 55319836 55319836 G C ATP8B1 Silent p.L1047L 0.06 TCGA-BT-A3PK-01 18 61067362 61067362 C G VPS4B Missense_Mutation p.D237H 0.11 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 18 65179748 65179748 G T DSEL Missense_Mutation p.P710T 0.09 tolerated(0.13) benign(0) TCGA-BT-A3PK-01 18 7044769 7044769 G A LAMA1 Nonsense_Mutation p.Q310* 0.14 TCGA-BT-A3PK-01 18 77664069 77664069 G A PQLC1 Silent p.D241D 0.14 TCGA-BT-A3PK-01 19 1032581 1032581 C G CNN2 Missense_Mutation p.I92M 0.09 deleterious(0) possibly_damaging(0.815) TCGA-BT-A3PK-01 19 1058041 1058041 G C ABCA7 Missense_Mutation p.E1670Q 0.08 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 19 11313325 11313325 C T DOCK6 Missense_Mutation p.E1766K 0.05 tolerated(0.39) benign(0.025) TCGA-BT-A3PK-01 19 14142766 14142766 C G IL27RA Missense_Mutation p.Q28E 0.15 tolerated(1) benign(0.01) TCGA-BT-A3PK-01 19 17942037 17942037 C G JAK3 Missense_Mutation p.W993S 0.09 deleterious(0) probably_damaging(0.969) TCGA-BT-A3PK-01 19 1881473 1881473 C T ABHD17A Silent p.P31P 0.05 TCGA-BT-A3PK-01 19 18898425 18898425 C T COMP Missense_Mutation p.R337H 0.11 tolerated(0.2) benign(0.216) TCGA-BT-A3PK-01 19 21239443 21239443 A G ZNF430 Missense_Mutation p.Y110C 0.09 tolerated(1) benign(0) TCGA-BT-A3PK-01 19 21909429 21909429 G C ZNF100 3'UTR 0.13 TCGA-BT-A3PK-01 19 22836772 22836772 G C ZNF492 Missense_Mutation p.E29Q 0.04 deleterious(0.02) possibly_damaging(0.727) TCGA-BT-A3PK-01 19 24102183 24102183 G A ZNF726 Silent p.L4L 0.12 TCGA-BT-A3PK-01 19 2810332 2810332 G A THOP1 Missense_Mutation p.V496M 0.06 deleterious(0) probably_damaging(0.993) TCGA-BT-A3PK-01 19 36214059 36214059 G A KMT2B Missense_Mutation p.R962H 0.10 probably_damaging(0.991) TCGA-BT-A3PK-01 19 38861352 38861352 A T CATSPERG Missense_Mutation p.M1134L 0.11 tolerated_low_confidence(0.62) benign(0.018) TCGA-BT-A3PK-01 19 38896259 38896259 G A FAM98C Nonsense_Mutation p.W245* 0.07 TCGA-BT-A3PK-01 19 40872687 40872687 G A PLD3 Missense_Mutation p.R37H 0.08 tolerated(0.06) benign(0.026) TCGA-BT-A3PK-01 19 45867571 45867571 G T ERCC2 Missense_Mutation p.S246Y 0.09 deleterious(0) probably_damaging(0.972) TCGA-BT-A3PK-01 19 46915949 46915949 C A CCDC8 Missense_Mutation p.R40L 0.08 probably_damaging(0.999) TCGA-BT-A3PK-01 19 46998670 46998670 T C PNMAL2 Missense_Mutation p.H18R 0.11 tolerated(0.56) benign(0.015) TCGA-BT-A3PK-01 19 47984066 47984066 C - KPTN Frame_Shift_Del p.E184Nfs*11 0.08 TCGA-BT-A3PK-01 19 49657934 49657934 C G HRC Silent p.G187G 0.07 TCGA-BT-A3PK-01 19 51217160 51217160 C A SHANK1 Silent p.V229V 0.06 TCGA-BT-A3PK-01 19 53884194 53884194 G C ZNF525 Missense_Mutation p.G121A 0.03 deleterious(0.04) possibly_damaging(0.545) TCGA-BT-A3PK-01 19 7794268 7794268 T A CLEC4G Missense_Mutation p.K289I 0.13 deleterious(0) probably_damaging(0.996) TCGA-BT-A3PK-01 1 10705093 10705093 T C CASZ1 Missense_Mutation p.Y1250C 0.12 tolerated(0.12) benign(0.059) TCGA-BT-A3PK-01 1 113655277 113655277 G A LRIG2 Missense_Mutation p.V659I 0.14 tolerated(0.06) benign(0.198) TCGA-BT-A3PK-01 1 117753545 117753545 C T VTCN1 5'UTR 0.16 TCGA-BT-A3PK-01 1 120311468 120311468 C T HMGCS2 5'UTR 0.19 TCGA-BT-A3PK-01 1 12405437 12405437 C T VPS13D Silent p.T2964T 0.11 TCGA-BT-A3PK-01 1 1337499 1337499 A G MRPL20 Silent p.P138P 0.13 TCGA-BT-A3PK-01 1 146658516 146658516 G A FMO5 Missense_Mutation p.A522V 0.10 tolerated(0.47) benign(0.046) TCGA-BT-A3PK-01 1 152059640 152059640 G C TCHHL1 Missense_Mutation p.S173C 0.07 deleterious(0.02) probably_damaging(0.962) TCGA-BT-A3PK-01 1 152060608 152060608 G C TCHHL1 Silent p.L4L 0.06 TCGA-BT-A3PK-01 1 152185716 152185716 C G HRNR Missense_Mutation p.G2797R 0.10 unknown(0) TCGA-BT-A3PK-01 1 153615700 153615700 A G CHTOP Intron 0.13 TCGA-BT-A3PK-01 1 153634771 153634771 T G ILF2 3'UTR 0.15 TCGA-BT-A3PK-01 1 154141837 154141837 C T TPM3 Silent p.L266L 0.06 TCGA-BT-A3PK-01 1 155152224 155152224 C A TRIM46 Missense_Mutation p.R468S 0.08 deleterious(0) possibly_damaging(0.574) TCGA-BT-A3PK-01 1 156230278 156230278 A G SMG5 Silent p.F749F 0.12 TCGA-BT-A3PK-01 1 160165264 160165264 C G CASQ1 Missense_Mutation p.F197L 0.03 deleterious(0) possibly_damaging(0.652) TCGA-BT-A3PK-01 1 16577749 16577749 C T FBXO42 Missense_Mutation p.G524R 0.06 deleterious_low_confidence(0.01) benign(0.032) TCGA-BT-A3PK-01 1 166818806 166818806 C G POGK Missense_Mutation p.H330Q 0.22 tolerated(0.74) benign(0) TCGA-BT-A3PK-01 1 169336986 169336986 G C NME7 5'UTR 0.11 TCGA-BT-A3PK-01 1 171310693 171310693 A G FMO4 Silent p.G464G 0.11 TCGA-BT-A3PK-01 1 172017833 172017833 G C DNM3 Missense_Mutation p.K426N 0.04 deleterious(0.03) possibly_damaging(0.497) TCGA-BT-A3PK-01 1 172501849 172501849 G T SUCO 5'Flank 0.06 TCGA-BT-A3PK-01 1 173907783 173907783 G C RC3H1 3'UTR 0.06 TCGA-BT-A3PK-01 1 17395638 17395638 G A PADI2 Silent p.D633D 0.10 TCGA-BT-A3PK-01 1 17552329 17552329 G C PADI1 Missense_Mutation p.E144D 0.10 tolerated(0.78) benign(0.428) TCGA-BT-A3PK-01 1 179320559 179320559 C G SOAT1 Missense_Mutation p.Q520E 0.04 deleterious(0) possibly_damaging(0.803) TCGA-BT-A3PK-01 1 181759626 181759626 G T CACNA1E Missense_Mutation p.Q1944H 0.34 deleterious(0.01) benign(0.216) TCGA-BT-A3PK-01 1 181762910 181762910 G T CACNA1E Missense_Mutation p.R2003L 0.27 deleterious(0) benign(0.25) TCGA-BT-A3PK-01 1 19644098 19644098 C A PQLC2 5'UTR 0.15 TCGA-BT-A3PK-01 1 200617674 200617674 C T DDX59 Missense_Mutation p.E497K 0.04 deleterious(0.05) possibly_damaging(0.845) TCGA-BT-A3PK-01 1 200821690 200821690 G C CAMSAP2 Missense_Mutation p.D1163H 0.03 deleterious(0) probably_damaging(0.99) TCGA-BT-A3PK-01 1 200967639 200967639 G C KIF21B Missense_Mutation p.I650M 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-BT-A3PK-01 1 202743773 202743773 T C KDM5B Missense_Mutation p.R125G 0.19 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 1 202842810 202842810 G T RP11-480I12.7 RNA 0.22 TCGA-BT-A3PK-01 1 207300065 207300065 C T C4BPA Silent p.T238T 0.18 TCGA-BT-A3PK-01 1 224588738 224588738 G A WDR26 Missense_Mutation p.H445Y 0.14 tolerated(0.26) possibly_damaging(0.625) TCGA-BT-A3PK-01 1 226053628 226053628 C T TMEM63A Missense_Mutation p.A239T 0.29 tolerated(0.14) benign(0.006) TCGA-BT-A3PK-01 1 22816495 22816495 C T ZBTB40 Silent p.C18C 0.09 TCGA-BT-A3PK-01 1 23233202 23233202 G C EPHB2 Splice_Site p.X631_splice 0.11 TCGA-BT-A3PK-01 1 247835472 247835472 T A OR13G1 Missense_Mutation p.N291I 0.04 deleterious(0) probably_damaging(0.998) TCGA-BT-A3PK-01 1 248039733 248039733 A G TRIM58 Missense_Mutation p.N468S 0.24 tolerated(0.29) benign(0.009) TCGA-BT-A3PK-01 1 248570047 248570047 T C OR2T1 Missense_Mutation p.V251A 0.22 tolerated(0.25) benign(0.044) TCGA-BT-A3PK-01 1 26189908 26189908 C T PAQR7 Silent p.L141L 0.16 TCGA-BT-A3PK-01 1 3740058 3740058 C A CEP104 Missense_Mutation p.K811N 0.08 tolerated(0.07) benign(0.248) TCGA-BT-A3PK-01 1 39801743 39801743 A G MACF1 Intron 0.15 TCGA-BT-A3PK-01 1 45266717 45266717 G C PLK3 Missense_Mutation p.E110Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 1 47746122 47746122 C G STIL Missense_Mutation p.D670H 0.26 tolerated(0.11) benign(0.168) TCGA-BT-A3PK-01 1 55457707 55457707 T C TMEM61 Silent p.S188S 0.31 TCGA-BT-A3PK-01 1 75622729 75622729 C T LHX8 Missense_Mutation p.T321M 0.20 deleterious(0.01) possibly_damaging(0.549) TCGA-BT-A3PK-01 1 78383288 78383288 A G NEXN Missense_Mutation p.Y22C 0.15 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 1 86304318 86304318 G C COL24A1 Missense_Mutation p.P1211A 0.16 deleterious(0.01) possibly_damaging(0.458) TCGA-BT-A3PK-01 1 89525999 89525999 G T GBP1 Missense_Mutation p.L67M 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-BT-A3PK-01 20 2463828 2463828 G A ZNF343 Silent p.I593I 0.11 TCGA-BT-A3PK-01 20 31624294 31624294 G C BPIFB6 Silent p.L207L 0.07 TCGA-BT-A3PK-01 20 33593524 33593524 C T TRPC4AP Missense_Mutation p.R637Q 0.12 deleterious(0.04) probably_damaging(0.981) TCGA-BT-A3PK-01 20 34457364 34457364 G T PHF20 Silent p.V271V 0.16 TCGA-BT-A3PK-01 20 3649560 3649560 G A ADAM33 3'UTR 0.19 TCGA-BT-A3PK-01 20 40033522 40033522 C A CHD6 Missense_Mutation p.G2620V 0.18 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 20 40118569 40118569 C A CHD6 Missense_Mutation p.G510V 0.18 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 20 42157356 42157356 A G L3MBTL1 Missense_Mutation p.I286V 0.13 tolerated(0.98) benign(0) TCGA-BT-A3PK-01 20 49551644 49551644 G A DPM1 3'UTR 0.06 TCGA-BT-A3PK-01 20 56136669 56136669 C T PCK1 Missense_Mutation p.R68W 0.10 deleterious(0.01) possibly_damaging(0.597) TCGA-BT-A3PK-01 20 60904247 60904247 C T LAMA5 Silent p.L1394L 0.13 TCGA-BT-A3PK-01 21 28296403 28296403 G A ADAMTS5 Missense_Mutation p.A921V 0.11 tolerated(0.12) probably_damaging(0.999) TCGA-BT-A3PK-01 21 30331900 30331900 C A LTN1 Missense_Mutation p.D871Y 0.14 deleterious(0) probably_damaging(0.968) TCGA-BT-A3PK-01 21 31744204 31744204 G T KRTAP13-2 Missense_Mutation p.L110M 0.11 deleterious(0.02) possibly_damaging(0.497) TCGA-BT-A3PK-01 21 40650683 40650683 G A BRWD1 Missense_Mutation p.S330F 0.05 deleterious(0) probably_damaging(0.982) TCGA-BT-A3PK-01 22 20074169 20074169 A G DGCR8 Missense_Mutation p.D228G 0.12 deleterious(0.04) benign(0.046) TCGA-BT-A3PK-01 22 22314027 22314027 C T TOP3B Missense_Mutation p.R579H 0.08 tolerated(0.31) benign(0.003) TCGA-BT-A3PK-01 22 23438386 23438386 T C GNAZ Silent p.Y168Y 0.10 TCGA-BT-A3PK-01 22 23500179 23500179 T A RAB36 Missense_Mutation p.V198E 0.10 deleterious(0) probably_damaging(0.965) TCGA-BT-A3PK-01 22 24810638 24810638 C T SPECC1L 3'UTR 0.16 TCGA-BT-A3PK-01 22 29622494 29622494 G A EMID1 Missense_Mutation p.S140N 0.20 deleterious(0) possibly_damaging(0.868) TCGA-BT-A3PK-01 22 37261076 37261080 AGAGC - NCF4 Frame_Shift_Del p.S79Cfs*47 0.16 TCGA-BT-A3PK-01 22 41553402 41553402 G A EP300 Missense_Mutation p.C1164Y 0.20 probably_damaging(1) TCGA-BT-A3PK-01 22 41918881 41918881 T A ACO2 Missense_Mutation p.S396T 0.19 deleterious_low_confidence(0) benign(0.087) TCGA-BT-A3PK-01 22 43459894 43459894 C T TTLL1 Silent p.V224V 0.04 TCGA-BT-A3PK-01 22 45802460 45802460 C T SMC1B Missense_Mutation p.G166R 0.07 tolerated(0.3) benign(0.008) TCGA-BT-A3PK-01 2 100170804 100170804 C G AFF3 Missense_Mutation p.E1201D 0.05 tolerated(0.74) possibly_damaging(0.635) TCGA-BT-A3PK-01 2 113590327 113590327 G C IL1B Silent p.L126L 0.09 TCGA-BT-A3PK-01 2 121981868 121981868 G A TFCP2L1 3'UTR 0.09 TCGA-BT-A3PK-01 2 133887605 133887605 G T NCKAP5 Missense_Mutation p.L96I 0.15 tolerated(0.11) probably_damaging(0.997) TCGA-BT-A3PK-01 2 133887606 133887606 G T NCKAP5 Silent p.T95T 0.15 TCGA-BT-A3PK-01 2 152536298 152536298 A G NEB Silent p.Y1064Y 0.08 TCGA-BT-A3PK-01 2 162273127 162273127 C T TBR1 Missense_Mutation p.P69L 0.12 deleterious(0.01) benign(0.059) TCGA-BT-A3PK-01 2 169948457 169948457 G A DHRS9 Missense_Mutation p.E244K 0.08 tolerated(0.34) benign(0.003) TCGA-BT-A3PK-01 2 177161616 177161616 A G MTX2 Silent p.T23T 0.12 TCGA-BT-A3PK-01 2 179635334 179635334 C G TTN Missense_Mutation p.E2729Q 0.11 TCGA-BT-A3PK-01 2 196581361 196581361 G C SLC39A10 Missense_Mutation p.G566A 0.11 tolerated(0.12) benign(0.318) TCGA-BT-A3PK-01 2 216245603 216245603 A G FN1 Missense_Mutation p.Y1789H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 2 219110212 219110212 C G ARPC2 Missense_Mutation p.L207V 0.09 deleterious(0) benign(0.121) TCGA-BT-A3PK-01 2 219746934 219746934 C T WNT10A Silent p.L55L 0.22 TCGA-BT-A3PK-01 2 228172496 228172496 G A COL4A3 Nonsense_Mutation p.W1441* 0.13 TCGA-BT-A3PK-01 2 233321093 233321093 G A ALPI Silent p.Q34Q 0.17 TCGA-BT-A3PK-01 2 242035577 242035577 C G MTERFD2 Missense_Mutation p.E328Q 0.11 tolerated(0.08) benign(0.007) TCGA-BT-A3PK-01 2 242662468 242662468 G A ING5 Missense_Mutation p.M199I 0.05 deleterious(0) possibly_damaging(0.824) TCGA-BT-A3PK-01 2 25180826 25180826 G A DNAJC27 Silent p.Y86Y 0.09 TCGA-BT-A3PK-01 2 26414194 26414194 G A HADHA Silent p.A739A 0.08 TCGA-BT-A3PK-01 2 27803662 27803662 A G C2orf16 Missense_Mutation p.D1408G 0.19 deleterious(0.05) possibly_damaging(0.843) TCGA-BT-A3PK-01 2 28828806 28828806 G T PLB1 Missense_Mutation p.W1016C 0.12 deleterious(0) probably_damaging(0.992) TCGA-BT-A3PK-01 2 29293647 29293647 C G C2orf71 Missense_Mutation p.E1161Q 0.05 tolerated(0.13) benign(0.036) TCGA-BT-A3PK-01 2 54080838 54080838 G C GPR75 Missense_Mutation p.F352L 0.17 tolerated(0.09) probably_damaging(0.983) TCGA-BT-A3PK-01 2 65492417 65492417 T C ACTR2 Intron 0.38 TCGA-BT-A3PK-01 2 70890760 70890760 C T ADD2 Missense_Mutation p.E660K 0.19 deleterious(0.03) benign(0.129) TCGA-BT-A3PK-01 2 71651790 71651790 A G ZNF638 Missense_Mutation p.E1512G 0.13 tolerated(1) benign(0) TCGA-BT-A3PK-01 2 73651764 73651764 T A ALMS1 Missense_Mutation p.I324N 0.16 possibly_damaging(0.478) TCGA-BT-A3PK-01 2 74757342 74757342 C T HTRA2 Missense_Mutation p.A70V 0.21 tolerated_low_confidence(0.46) benign(0.001) TCGA-BT-A3PK-01 2 77746503 77746503 C G LRRTM4 Missense_Mutation p.L164F 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-BT-A3PK-01 2 95847683 95847683 T C ZNF2 Silent p.Y370Y 0.15 TCGA-BT-A3PK-01 2 97427544 97427544 A T CNNM4 Missense_Mutation p.M270L 0.06 tolerated(0.7) benign(0.007) TCGA-BT-A3PK-01 3 10133873 10133873 A C FANCD2 Missense_Mutation p.E1262D 0.17 tolerated(0.4) possibly_damaging(0.669) TCGA-BT-A3PK-01 3 108355537 108355537 T G DZIP3 Silent p.P331P 0.14 TCGA-BT-A3PK-01 3 111936346 111936346 C T SLC9C1 Missense_Mutation p.R578K 0.05 tolerated(0.43) probably_damaging(0.957) TCGA-BT-A3PK-01 3 119720941 119720941 T C GSK3B Silent p.S78S 0.16 TCGA-BT-A3PK-01 3 122667521 122667521 C T SEMA5B Missense_Mutation p.A108T 0.10 deleterious_low_confidence(0.05) benign(0.056) TCGA-BT-A3PK-01 3 125166629 125166629 C T SNX4 Silent p.K449K 0.12 TCGA-BT-A3PK-01 3 130174321 130174321 G C COL6A5 Missense_Mutation p.D2201H 0.06 tolerated(0.5) benign(0.17) TCGA-BT-A3PK-01 3 137843160 137843160 C T A4GNT Silent p.L323L 0.06 TCGA-BT-A3PK-01 3 141161237 141161237 G A ZBTB38 Missense_Mutation p.V3I 0.13 tolerated(0.09) benign(0.089) TCGA-BT-A3PK-01 3 141163550 141163550 A G ZBTB38 Missense_Mutation p.I774V 0.15 tolerated(0.73) benign(0) TCGA-BT-A3PK-01 3 142226809 142226809 C T ATR Silent p.K1665K 0.14 TCGA-BT-A3PK-01 3 148847597 148847597 G C HPS3 Silent p.G29G 0.07 TCGA-BT-A3PK-01 3 148872982 148872982 G A HPS3 Missense_Mutation p.V497M 0.14 tolerated(0.09) benign(0.021) TCGA-BT-A3PK-01 3 156866286 156866286 T A CCNL1 Missense_Mutation p.N442I 0.14 tolerated(0.07) possibly_damaging(0.902) TCGA-BT-A3PK-01 3 160138558 160138558 G C SMC4 Missense_Mutation p.D630H 0.11 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PK-01 3 180359944 180359944 T G CCDC39 Missense_Mutation p.T571P 0.30 deleterious(0.01) benign(0.213) TCGA-BT-A3PK-01 3 183217612 183217612 T A KLHL6 Missense_Mutation p.I305F 0.12 tolerated(0.08) possibly_damaging(0.578) TCGA-BT-A3PK-01 3 184299392 184299392 G A EPHB3 Silent p.T993T 0.09 TCGA-BT-A3PK-01 3 185970927 185970927 G A DGKG Missense_Mutation p.L519F 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 3 197427591 197427591 C T KIAA0226 Missense_Mutation p.R385H 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-BT-A3PK-01 3 20215950 20215950 C G SGOL1 Missense_Mutation p.R358T 0.10 tolerated(0.39) benign(0.016) TCGA-BT-A3PK-01 3 38180222 38180222 G A MYD88 Missense_Mutation p.A24T 0.15 tolerated(0.27) possibly_damaging(0.682) TCGA-BT-A3PK-01 3 39229444 39229444 G C XIRP1 Missense_Mutation p.S498C 0.04 deleterious(0) probably_damaging(0.98) TCGA-BT-A3PK-01 3 403383 403383 T A CHL1 Missense_Mutation p.D436E 0.09 tolerated(0.05) benign(0.247) TCGA-BT-A3PK-01 3 44612226 44612226 C T ZKSCAN7 Nonsense_Mutation p.Q542* 0.09 TCGA-BT-A3PK-01 3 44700861 44700861 T C ZNF35 Missense_Mutation p.C336R 0.09 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 3 46480933 46480933 C T LTF Missense_Mutation p.A588T 0.17 tolerated(0.06) benign(0.002) TCGA-BT-A3PK-01 3 47458631 47458631 G A SCAP Silent p.L1013L 0.17 TCGA-BT-A3PK-01 3 48605567 48605567 C T COL7A1 Missense_Mutation p.G2611R 0.17 probably_damaging(1) TCGA-BT-A3PK-01 3 48687965 48687965 G T CELSR3 Silent p.P2140P 0.08 TCGA-BT-A3PK-01 3 49050370 49050370 C T WDR6 Missense_Mutation p.S498L 0.06 deleterious(0.02) benign(0.234) TCGA-BT-A3PK-01 3 51308411 51308411 G T DOCK3 Missense_Mutation p.V841L 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-BT-A3PK-01 3 51750145 51750145 G A GRM2 Missense_Mutation p.D786N 0.05 deleterious(0.05) probably_damaging(0.992) TCGA-BT-A3PK-01 3 52473771 52473771 G C SEMA3G Silent p.L464L 0.09 TCGA-BT-A3PK-01 3 52814365 52814366 CC A ITIH1 Frame_Shift_Del p.Q219Kfs*20 0.14 TCGA-BT-A3PK-01 3 53217515 53217515 T C PRKCD Silent p.V235V 0.14 TCGA-BT-A3PK-01 3 56674101 56674101 G A FAM208A Missense_Mutation p.P893S 0.10 tolerated(0.25) benign(0.074) TCGA-BT-A3PK-01 4 122782704 122782704 T A BBS7 Missense_Mutation p.Q99L 0.20 tolerated(0.49) benign(0.046) TCGA-BT-A3PK-01 4 123122253 123122253 C T KIAA1109 Silent p.F490F 0.06 TCGA-BT-A3PK-01 4 123317468 123317468 A G ADAD1 Silent p.L220L 0.12 TCGA-BT-A3PK-01 4 128865042 128865060 GTCTATAATTAGACCATAA - MFSD8 Frame_Shift_Del p.L96Qfs*11 0.12 TCGA-BT-A3PK-01 4 129043216 129043216 G C LARP1B Missense_Mutation p.R466P 0.14 deleterious(0.01) benign(0.087) TCGA-BT-A3PK-01 4 138452557 138452557 G A PCDH18 Missense_Mutation p.S229L 0.06 deleterious(0) possibly_damaging(0.685) TCGA-BT-A3PK-01 4 154709870 154709870 A T SFRP2 Missense_Mutation p.C40S 0.09 deleterious(0) probably_damaging(0.994) TCGA-BT-A3PK-01 4 159782529 159782529 T C FNIP2 Missense_Mutation p.I395T 0.06 deleterious(0) possibly_damaging(0.837) TCGA-BT-A3PK-01 4 174312370 174312370 C T SCRG1 Missense_Mutation p.E66K 0.05 deleterious(0.04) probably_damaging(0.994) TCGA-BT-A3PK-01 4 1807559 1807559 C T FGFR3 Silent p.D578D 0.19 TCGA-BT-A3PK-01 4 187541336 187541336 A T FAT1 Missense_Mutation p.I2135N 0.17 probably_damaging(0.98) TCGA-BT-A3PK-01 4 4199012 4199012 C T OTOP1 Missense_Mutation p.E517K 0.09 tolerated(0.39) benign(0.005) TCGA-BT-A3PK-01 4 47427924 47427924 C G GABRB1 Silent p.V438V 0.11 TCGA-BT-A3PK-01 4 6698851 6698851 G C S100P 3'UTR 0.09 TCGA-BT-A3PK-01 4 7062489 7062489 G A GRPEL1 3'UTR 0.08 TCGA-BT-A3PK-01 4 72622632 72622632 C T GC Splice_Site p.X297_splice 0.37 TCGA-BT-A3PK-01 4 73959821 73959821 T C ANKRD17 Missense_Mutation p.T1768A 0.52 benign(0.154) TCGA-BT-A3PK-01 4 85678145 85678145 A T WDFY3 Missense_Mutation p.S1786R 0.12 tolerated(0.3) benign(0.002) TCGA-BT-A3PK-01 4 89352340 89352340 T A HERC6 Silent p.P711P 0.10 TCGA-BT-A3PK-01 4 90169257 90169257 C T GPRIN3 Missense_Mutation p.A669T 0.14 tolerated(0.49) benign(0.043) TCGA-BT-A3PK-01 5 132228738 132228738 G C AFF4 Missense_Mutation p.P794A 0.14 tolerated(0.86) benign(0.001) TCGA-BT-A3PK-01 5 132552957 132552957 G T FSTL4 Silent p.V524V 0.16 TCGA-BT-A3PK-01 5 1338993 1338993 A T CLPTM1L Missense_Mutation p.V194E 0.12 deleterious(0) probably_damaging(0.953) TCGA-BT-A3PK-01 5 13901509 13901509 T C DNAH5 Missense_Mutation p.H635R 0.13 possibly_damaging(0.537) TCGA-BT-A3PK-01 5 139917005 139917005 A G ANKHD1 Silent p.P2353P 0.18 TCGA-BT-A3PK-01 5 140236270 140236270 G A PCDHA10 Missense_Mutation p.A213T 0.13 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-BT-A3PK-01 5 140552984 140552984 A G PCDHB7 Missense_Mutation p.I190V 0.20 tolerated_low_confidence(0.07) benign(0.003) TCGA-BT-A3PK-01 5 140764040 140764040 T A PCDHGA7 Nonsense_Mutation p.L525* 0.07 TCGA-BT-A3PK-01 5 148929685 148929685 G T CSNK1A1 Missense_Mutation p.S61R 0.08 deleterious_low_confidence(0) benign(0.029) TCGA-BT-A3PK-01 5 176827154 176827154 G A PFN3 3'UTR 0.18 TCGA-BT-A3PK-01 5 177573138 177573138 C T RMND5B Silent p.L240L 0.14 TCGA-BT-A3PK-01 5 177640080 177640080 C G PHYKPL Silent p.L399L 0.07 TCGA-BT-A3PK-01 5 178552080 178552080 G T ADAMTS2 Missense_Mutation p.T951N 0.14 tolerated(1) benign(0.012) TCGA-BT-A3PK-01 5 482240 482240 C T SLC9A3 Silent p.L463L 0.14 TCGA-BT-A3PK-01 5 61669661 61669661 A C KIF2A Missense_Mutation p.Q636H 0.16 tolerated(0.13) possibly_damaging(0.866) TCGA-BT-A3PK-01 5 66440574 66440574 C A MAST4 Silent p.T936T 0.13 TCGA-BT-A3PK-01 5 7817000 7817000 C T ADCY2 Missense_Mutation p.H969Y 0.16 tolerated(0.07) probably_damaging(0.929) TCGA-BT-A3PK-01 5 78692703 78692703 T G HOMER1 Missense_Mutation p.E273D 0.21 deleterious(0.02) probably_damaging(0.985) TCGA-BT-A3PK-01 5 79855446 79855446 T C ANKRD34B Silent p.T131T 0.14 TCGA-BT-A3PK-01 5 82832894 82832894 A G VCAN Missense_Mutation p.S1358G 0.09 deleterious(0) probably_damaging(0.978) TCGA-BT-A3PK-01 5 94845328 94845328 A T TTC37 Missense_Mutation p.L995Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 6 110106228 110106228 G A FIG4 Missense_Mutation p.E649K 0.09 deleterious(0) probably_damaging(0.954) TCGA-BT-A3PK-01 6 119669755 119669755 T C MAN1A1 Missense_Mutation p.Q159R 0.08 tolerated(0.34) benign(0.005) TCGA-BT-A3PK-01 6 122733867 122733867 C G HSF2 Missense_Mutation p.F96L 0.05 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 6 132270442 132270442 A G CTGF Missense_Mutation p.S338P 0.11 tolerated(0.49) benign(0.068) TCGA-BT-A3PK-01 6 135787429 135787429 T C AHI1 Missense_Mutation p.K91R 0.10 deleterious(0) benign(0.055) TCGA-BT-A3PK-01 6 138198260 138198260 G A TNFAIP3 Missense_Mutation p.D285N 0.09 deleterious(0) probably_damaging(0.997) TCGA-BT-A3PK-01 6 151152027 151152027 G A PLEKHG1 Missense_Mutation p.E594K 0.05 tolerated(0.24) benign(0.345) TCGA-BT-A3PK-01 6 158516772 158516772 A G SYNJ2 Silent p.P1289P 0.15 TCGA-BT-A3PK-01 6 161470322 161470322 C G MAP3K4 Missense_Mutation p.H340D 0.08 tolerated(0.21) benign(0.071) TCGA-BT-A3PK-01 6 161470565 161470565 G C MAP3K4 Missense_Mutation p.D421H 0.10 tolerated(0.06) possibly_damaging(0.836) TCGA-BT-A3PK-01 6 27107349 27107349 G T HIST1H4I Missense_Mutation p.V88F 0.10 deleterious(0.01) possibly_damaging(0.847) TCGA-BT-A3PK-01 6 27835242 27835242 C G HIST1H1B Missense_Mutation p.K22N 0.06 deleterious(0) unknown(0) TCGA-BT-A3PK-01 6 28269267 28269267 G A PGBD1 Missense_Mutation p.D546N 0.10 deleterious(0.03) possibly_damaging(0.864) TCGA-BT-A3PK-01 6 28269301 28269301 A G PGBD1 Missense_Mutation p.Q557R 0.10 deleterious(0.02) benign(0.393) TCGA-BT-A3PK-01 6 30080629 30080629 T C TRIM31 5'UTR 0.15 TCGA-BT-A3PK-01 6 30680687 30680687 G A MDC1 Silent p.V344V 0.13 TCGA-BT-A3PK-01 6 33690810 33690810 C T IP6K3 Missense_Mutation p.R307Q 0.19 tolerated(0.51) benign(0.005) TCGA-BT-A3PK-01 6 34850885 34850885 A G TAF11 Intron 0.13 TCGA-BT-A3PK-01 6 39159465 39159465 C A KCNK5 Missense_Mutation p.G234V 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 6 43152278 43152278 C T CUL9 Missense_Mutation p.P77L 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-BT-A3PK-01 6 47846771 47846771 G C PTCHD4 Missense_Mutation p.I603M 0.10 deleterious(0) probably_damaging(0.986) TCGA-BT-A3PK-01 6 49416588 49416588 C T MUT Missense_Mutation p.G462E 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-BT-A3PK-01 6 51612779 51612779 A G PKHD1 Missense_Mutation p.F3212S 0.15 deleterious(0) probably_damaging(0.999) TCGA-BT-A3PK-01 6 51824704 51824704 T A PKHD1 Missense_Mutation p.T1958S 0.08 deleterious(0.04) benign(0.217) TCGA-BT-A3PK-01 6 51824706 51824706 T C PKHD1 Missense_Mutation p.D1957G 0.08 tolerated(0.26) benign(0.398) TCGA-BT-A3PK-01 6 55113489 55113489 C G HCRTR2 Missense_Mutation p.F92L 0.03 deleterious(0) probably_damaging(0.996) TCGA-BT-A3PK-01 6 7586077 7586077 C A DSP Missense_Mutation p.S2861Y 0.07 possibly_damaging(0.735) TCGA-BT-A3PK-01 6 7602960 7602960 A G SNRNP48 Missense_Mutation p.K234E 0.10 deleterious(0.02) possibly_damaging(0.841) TCGA-BT-A3PK-01 6 8422784 8422784 C A SLC35B3 Missense_Mutation p.G165C 0.20 deleterious(0) probably_damaging(0.992) TCGA-BT-A3PK-01 7 101882763 101882763 G T CUX1 Silent p.A1273A 0.24 TCGA-BT-A3PK-01 7 107706844 107706844 C A LAMB4 Missense_Mutation p.G883V 0.11 tolerated(0.08) possibly_damaging(0.46) TCGA-BT-A3PK-01 7 123302814 123302814 T C LMOD2 Missense_Mutation p.S392P 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A3PK-01 7 128586051 128586051 G C IRF5 Missense_Mutation p.K116N 0.08 deleterious(0) probably_damaging(1) TCGA-BT-A3PK-01 7 129929559 129929559 T C CPA2 Missense_Mutation p.M411T 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-BT-A3PK-01 7 150779465 150779465 C A TMUB1 Missense_Mutation p.M62I 0.13 tolerated(0.19) benign(0) TCGA-BT-A3PK-01 7 151919766 151919766 A G KMT2C Missense_Mutation p.W1109R 0.15 probably_damaging(0.999) TCGA-BT-A3PK-01 7 22165219 22165219 C T RAPGEF5 Intron 0.15 TCGA-BT-A3PK-01 7 2311576 2311576 C G SNX8 Missense_Mutation p.R150T 0.06 deleterious(0) probably_damaging(0.996) TCGA-BT-A3PK-01 7 28858795 28858795 C A CREB5 Missense_Mutation p.H476N 0.19 deleterious(0) unknown(0) TCGA-BT-A3PK-01 7 36445999 36445999 G T ANLN Missense_Mutation p.A233S 0.20 tolerated(0.26) benign(0.012) TCGA-BT-A3PK-01 7 37311474 37311474 A T ELMO1 Missense_Mutation p.I69K 0.05 deleterious(0) possibly_damaging(0.71) TCGA-BT-A3PK-01 7 48015279 48015279 A G HUS1 Silent p.S157S 0.17 TCGA-BT-A3PK-01 7 5036288 5036288 G A RNF216P1 RNA 0.10 TCGA-BT-A3PK-01 7 55214318 55214318 G A EGFR Silent p.V148V 0.13 TCGA-BT-A3PK-01 7 75615697 75615697 C A POR Nonsense_Mutation p.Y647* 0.17 TCGA-BT-A3PK-01 7 77326204 77326204 C T RSBN1L Missense_Mutation p.H140Y 0.11 deleterious_low_confidence(0.03) benign(0.291) TCGA-BT-A3PK-01 7 82451794 82451794 T G PCLO Intron 0.06 TCGA-BT-A3PK-01 7 82579040 82579040 C T PCLO Missense_Mutation p.V3622I 0.14 unknown(0) TCGA-BT-A3PK-01 7 82579271 82579271 C T PCLO Missense_Mutation p.A3545T 0.11 unknown(0) TCGA-BT-A3PK-01 7 90528655 90528655 C T CDK14 Missense_Mutation p.P212L 0.20 tolerated(0.47) benign(0.023) TCGA-BT-A3PK-01 7 90894816 90894816 C T FZD1 Silent p.F207F 0.15 TCGA-BT-A3PK-01 7 91855114 91855114 G C KRIT1 Missense_Mutation p.P392A 0.10 tolerated(0.38) probably_damaging(0.998) TCGA-BT-A3PK-01 7 99771457 99771457 C A GPC2 Splice_Site p.X298_splice 0.08 TCGA-BT-A3PK-01 8 10466033 10466033 C T RP1L1 Missense_Mutation p.D1859N 0.04 unknown(0) TCGA-BT-A3PK-01 8 128972938 128972938 C G MIR1205 RNA 0.08 TCGA-BT-A3PK-01 8 145753310 145753310 C A C8orf82 Intron 0.25 TCGA-BT-A3PK-01 8 146108216 146108216 C T ZNF250 Missense_Mutation p.E123K 0.06 tolerated(0.37) benign(0.004) TCGA-BT-A3PK-01 8 57228822 57228822 C T SDR16C5 Missense_Mutation p.A29T 0.23 tolerated(0.46) benign(0) TCGA-BT-A3PK-01 8 96264413 96264413 T C C8orf37 Intron 0.20 TCGA-BT-A3PK-01 8 98703239 98703239 G C MTDH Missense_Mutation p.V291L 0.08 tolerated(0.21) benign(0.003) TCGA-BT-A3PK-01 9 100667070 100667070 G A C9orf156 Missense_Mutation p.S424F 0.11 deleterious(0) benign(0.219) TCGA-BT-A3PK-01 9 112151539 112151539 A G PTPN3 Silent p.L743L 0.11 TCGA-BT-A3PK-01 9 112189306 112189306 G A PTPN3 Nonsense_Mutation p.Q309* 0.05 TCGA-BT-A3PK-01 9 125424441 125424441 C A OR1L1 Missense_Mutation p.F149L 0.12 deleterious(0.01) benign(0.012) TCGA-BT-A3PK-01 9 130691967 130691967 C A PIP5KL1 Silent p.T76T 0.21 TCGA-BT-A3PK-01 9 133506081 133506081 C T FUBP3 Missense_Mutation p.P395L 0.05 deleterious(0) probably_damaging(0.994) TCGA-BT-A3PK-01 9 136201230 136201234 GCAGG - SURF6 Frame_Shift_Del p.P100Rfs*6 0.12 TCGA-BT-A3PK-01 9 136220674 136220682 CCTCCCGGG - SURF1 In_Frame_Del p.A146_E148del 0.09 TCGA-BT-A3PK-01 9 136337170 136337170 G A SLC2A6 Silent p.R499R 0.14 TCGA-BT-A3PK-01 9 139306631 139306631 G C PMPCA Missense_Mutation p.G85A 0.04 deleterious(0.01) probably_damaging(1) TCGA-BT-A3PK-01 9 140100321 140100321 G T NDOR1 Missense_Mutation p.R31L 0.10 tolerated(0.05) possibly_damaging(0.48) TCGA-BT-A3PK-01 9 79960014 79960014 C G VPS13A Silent p.L2415L 0.09 TCGA-BT-A3PK-01 9 94172990 94172990 G A NFIL3 Silent p.V9V 0.04 TCGA-BT-A3PK-01 9 98691012 98691012 G A ERCC6L2 Silent p.V550V 0.18 TCGA-BT-A3PK-01 X 100617587 100617587 T G BTK Missense_Mutation p.N161T 0.36 tolerated(0.66) benign(0.007) TCGA-BT-A3PK-01 X 102632754 102632754 G T NGFRAP1 Nonstop_Mutation p.*112Lext*11 0.17 TCGA-BT-A3PK-01 X 109697168 109697168 C G RGAG1 Missense_Mutation p.S1108C 0.11 deleterious(0.05) benign(0.103) TCGA-BT-A3PK-01 X 129150054 129150054 G T BCORL1 Missense_Mutation p.K1102N 0.26 probably_damaging(0.972) TCGA-BT-A3PK-01 X 147743712 147743712 C G AFF2 Nonsense_Mutation p.S155* 0.12 TCGA-BT-A3PK-01 X 153128264 153128264 C T L1CAM Missense_Mutation p.D1210N 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-BT-A3PK-01 X 37705596 37705596 C T DYNLT3 Missense_Mutation p.E16K 0.21 deleterious(0) benign(0.065) TCGA-BT-A3PK-01 X 41075732 41075732 A G USP9X Missense_Mutation p.E1971G 0.30 deleterious(0.03) benign(0.067) TCGA-BT-A3PK-01 X 48887952 48887952 C - TFE3 Frame_Shift_Del p.G482Dfs*44 0.24 TCGA-BT-A3PK-01 X 73812092 73812092 G A RLIM Missense_Mutation p.T353I 0.23 tolerated(0.06) unknown(0) TCGA-BT-A3PK-01 X 96048627 96048627 T C DIAPH2 Intron 0.26 TCGA-BT-A3PK-01 Y 9195447 9195447 G T TSPY8 5'Flank 0.19 TCGA-BT-A42B-01 10 135438800 135438800 G A FRG2B Missense_Mutation p.R214W 0.54 tolerated(0.23) benign(0.002) TCGA-BT-A42B-01 10 49658321 49658321 G C ARHGAP22 Nonsense_Mutation p.Y633* 0.79 TCGA-BT-A42B-01 10 56077173 56077173 C T PCDH15 Missense_Mutation p.R245Q 0.75 tolerated(0.26) probably_damaging(0.992) TCGA-BT-A42B-01 11 4976491 4976491 G T OR51A2 Silent p.S151S 0.26 TCGA-BT-A42B-01 11 65780370 65780370 G T CST6 Missense_Mutation p.G105V 0.33 deleterious(0.02) probably_damaging(0.988) TCGA-BT-A42B-01 11 78443573 78443573 G A TENM4 Missense_Mutation p.R976W 0.62 deleterious(0) probably_damaging(1) TCGA-BT-A42B-01 12 103696166 103696166 G A C12orf42 Missense_Mutation p.A268V 0.37 tolerated(0.82) benign(0.02) TCGA-BT-A42B-01 12 121017031 121017031 G C POP5 3'UTR 0.40 TCGA-BT-A42B-01 12 129559351 129559351 G A TMEM132D Missense_Mutation p.T790M 0.28 tolerated(0.24) possibly_damaging(0.62) TCGA-BT-A42B-01 12 49420990 49421006 GGGGAAGGGGGCGGGGA - KMT2D Frame_Shift_Del p.S4915Lfs*11 0.74 TCGA-BT-A42B-01 12 50355840 50355840 G A AQP5 Missense_Mutation p.V14M 0.31 deleterious(0) possibly_damaging(0.888) TCGA-BT-A42B-01 13 114202741 114202741 C T TMCO3 Nonsense_Mutation p.R632* 0.37 TCGA-BT-A42B-01 13 53313190 53313190 G A LECT1 Silent p.Y63Y 0.24 TCGA-BT-A42B-01 14 19563461 19563461 T A POTEG Silent p.L325L 0.07 TCGA-BT-A42B-01 14 21829276 21829276 T C SUPT16H Silent p.K630K 0.14 TCGA-BT-A42B-01 15 73593703 73593703 G A NEO1 Missense_Mutation p.G1403R 0.07 deleterious(0) probably_damaging(0.99) TCGA-BT-A42B-01 15 90611415 90611415 G A ZNF710 Missense_Mutation p.R349Q 0.66 deleterious(0) probably_damaging(0.992) TCGA-BT-A42B-01 16 11001758 11001758 G A CIITA Silent p.A803A 0.58 TCGA-BT-A42B-01 16 16230365 16230365 A G ABCC1 Missense_Mutation p.M1386V 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-BT-A42B-01 16 2304013 2304013 C T RNPS1 Silent p.P290P 0.31 TCGA-BT-A42B-01 16 24902200 24902200 G A SLC5A11 Silent p.A225A 0.37 TCGA-BT-A42B-01 16 29852959 29852959 G A MVP Missense_Mutation p.E412K 0.50 deleterious(0) probably_damaging(0.972) TCGA-BT-A42B-01 16 30017613 30017613 C A DOC2A Missense_Mutation p.R366L 0.43 tolerated(1) benign(0) TCGA-BT-A42B-01 16 31425842 31425842 C T ITGAD Silent p.F689F 0.36 TCGA-BT-A42B-01 17 1268269 1268269 T A YWHAE Nonsense_Mutation p.K50* 0.06 TCGA-BT-A42B-01 17 1268270 1268270 A T YWHAE Nonsense_Mutation p.Y49* 0.06 TCGA-BT-A42B-01 17 42854950 42854950 G A ADAM11 Missense_Mutation p.G628S 0.32 tolerated(0.16) benign(0.087) TCGA-BT-A42B-01 17 78327303 78327303 C T RNF213 Intron 0.28 TCGA-BT-A42B-01 19 13409700 13409700 C T CACNA1A Nonsense_Mutation p.W916* 0.45 TCGA-BT-A42B-01 19 16860863 16860863 G A NWD1 Silent p.S470S 0.33 TCGA-BT-A42B-01 19 19745888 19745888 G A GMIP Silent p.P565P 0.31 TCGA-BT-A42B-01 19 33517486 33517486 C T RHPN2 Missense_Mutation p.V80I 0.40 deleterious(0.02) possibly_damaging(0.699) TCGA-BT-A42B-01 19 39026668 39026668 A C RYR1 Missense_Mutation p.N3850H 0.33 benign(0.001) TCGA-BT-A42B-01 19 50939408 50939408 C T MYBPC2 Silent p.S112S 0.23 TCGA-BT-A42B-01 19 56200276 56200276 G A EPN1 Silent p.A284A 0.45 TCGA-BT-A42B-01 19 58571428 58571428 G A ZNF135 Intron 0.37 TCGA-BT-A42B-01 1 159898436 159898436 G A IGSF9 Silent p.P914P 0.31 TCGA-BT-A42B-01 1 16477440 16477441 GC A EPHA2 Frame_Shift_Del p.A35Lfs*20 0.46 TCGA-BT-A42B-01 1 183559371 183559371 C T NCF2 Missense_Mutation p.V32I 0.42 tolerated(0.57) benign(0.005) TCGA-BT-A42B-01 1 226044658 226044658 G A TMEM63A Silent p.L479L 0.40 TCGA-BT-A42B-01 1 245582982 245582982 G T KIF26B Silent p.S367S 0.26 TCGA-BT-A42B-01 1 26385115 26385115 C A TRIM63 Splice_Site p.X200_splice 0.05 TCGA-BT-A42B-01 1 43893772 43893772 A G SZT2 Missense_Mutation p.Q1244R 0.34 tolerated(0.74) possibly_damaging(0.725) TCGA-BT-A42B-01 1 47691456 47691456 G A TAL1 Silent p.N35N 0.44 TCGA-BT-A42B-01 1 62740332 62740332 G A KANK4 Silent p.A148A 0.31 TCGA-BT-A42B-01 1 66075760 66075760 C A LEPR Missense_Mutation p.P628Q 0.45 deleterious(0) possibly_damaging(0.864) TCGA-BT-A42B-01 1 93646075 93646075 G T CCDC18 5'Flank 0.80 TCGA-BT-A42B-01 20 42204997 42204997 G A SGK2 Missense_Mutation p.R336Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-BT-A42B-01 20 62200824 62200824 G A HELZ2 Silent p.F255F 0.43 TCGA-BT-A42B-01 20 62338384 62338384 G A ARFRP1 Silent p.I20I 0.43 TCGA-BT-A42B-01 22 20729838 20729838 C T USP41 Silent p.R114R 0.08 TCGA-BT-A42B-01 2 132021787 132021787 C T POTEE Missense_Mutation p.A920V 0.02 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-BT-A42B-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.49 deleterious(0) probably_damaging(0.999) TCGA-BT-A42B-01 2 202216040 202216040 G A ALS2CR12 Missense_Mutation p.R30C 0.24 tolerated(0.07) benign(0.002) TCGA-BT-A42B-01 2 33007733 33007733 G T TTC27 Missense_Mutation p.R607L 0.44 deleterious(0) possibly_damaging(0.665) TCGA-BT-A42B-01 2 39250333 39250333 C T SOS1 Missense_Mutation p.M412I 0.39 tolerated(0.64) benign(0.004) TCGA-BT-A42B-01 2 98177186 98177186 G C ANKRD36B RNA 0.40 TCGA-BT-A42B-01 3 138738758 138738758 G A PRR23B Missense_Mutation p.P249L 0.04 tolerated(0.15) benign(0.008) TCGA-BT-A42B-01 3 142567124 142567124 G A PCOLCE2 Missense_Mutation p.S128F 0.38 deleterious(0) probably_damaging(0.958) TCGA-BT-A42B-01 3 155861036 155861036 A T KCNAB1 Intron 0.43 TCGA-BT-A42B-01 3 170099114 170099114 C G SKIL Nonsense_Mutation p.S394* 0.35 TCGA-BT-A42B-01 3 179462957 179462957 T C USP13 Missense_Mutation p.V554A 0.35 deleterious(0) possibly_damaging(0.829) TCGA-BT-A42B-01 3 49690722 49690722 G A BSN Missense_Mutation p.A1245T 0.37 unknown(0) TCGA-BT-A42B-01 3 56807790 56807790 G C ARHGEF3 Missense_Mutation p.L83V 0.76 tolerated(0.1) benign(0.355) TCGA-BT-A42B-01 4 154217081 154217081 C T TRIM2 Missense_Mutation p.P468L 0.44 tolerated(0.07) probably_damaging(0.937) TCGA-BT-A42B-01 4 187539564 187539564 G A FAT1 Nonsense_Mutation p.R2726* 0.34 TCGA-BT-A42B-01 5 24537588 24537588 C T CDH10 Missense_Mutation p.E143K 0.36 tolerated(0.09) probably_damaging(0.966) TCGA-BT-A42B-01 5 63257179 63257179 G A HTR1A Missense_Mutation p.S123F 0.64 deleterious(0) probably_damaging(1) TCGA-BT-A42B-01 6 125231517 125231517 T G RP11-510H23.1 RNA 0.41 TCGA-BT-A42B-01 6 126298916 126298916 G T HINT3 3'UTR 0.35 TCGA-BT-A42B-01 6 168467491 168467491 G A FRMD1 Silent p.A135A 0.26 TCGA-BT-A42B-01 6 27834575 27834575 G T HIST1H1B 3'UTR 0.62 TCGA-BT-A42B-01 6 80197346 80197346 G A LCA5 Missense_Mutation p.P490L 0.38 deleterious(0) probably_damaging(0.995) TCGA-BT-A42B-01 7 149431140 149431140 C T KRBA1 3'UTR 0.31 TCGA-BT-A42B-01 7 149489805 149489805 G A SSPO RNA 0.43 TCGA-BT-A42B-01 7 64437913 64437913 T C ZNF117 3'UTR 0.19 TCGA-BT-A42B-01 8 122626355 122626355 A T HAS2 Missense_Mutation p.D551E 0.28 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-BT-A42B-01 8 124382176 124382176 A G ATAD2 Silent p.D272D 0.21 TCGA-BT-A42B-01 8 139606274 139606274 G A COL22A1 Missense_Mutation p.P1534L 0.34 unknown(0) TCGA-BT-A42B-01 8 144940602 144940602 C T EPPK1 Missense_Mutation p.D2274N 0.03 possibly_damaging(0.879) TCGA-BT-A42B-01 8 35608269 35608269 A G UNC5D Missense_Mutation p.N702S 0.36 tolerated(0.48) benign(0.038) TCGA-BT-A42B-01 8 52321370 52321370 T C PXDNL Silent p.T938T 0.18 TCGA-BT-A42B-01 8 9584174 9584174 G A TNKS Missense_Mutation p.D649N 0.37 tolerated(0.13) probably_damaging(0.991) TCGA-BT-A42B-01 9 112969868 112969868 G C C9orf152 5'UTR 0.34 TCGA-BT-A42B-01 9 113173859 113173859 G C SVEP1 Missense_Mutation p.F2044L 0.36 benign(0.091) TCGA-BT-A42B-01 9 94172665 94172665 C G NFIL3 Missense_Mutation p.E118Q 0.38 deleterious(0) probably_damaging(0.938) TCGA-BT-A42B-01 X 110439847 110439847 C T PAK3 Silent p.Y498Y 0.32 TCGA-BT-A42B-01 X 151900051 151900051 C G MAGEA12 Missense_Mutation p.L250F 0.23 tolerated(0.25) benign(0.05) TCGA-BT-A42B-01 X 70471085 70471085 C A ZMYM3 Nonsense_Mutation p.E241* 0.80 TCGA-BT-A42B-01 X 77112890 77112890 C T MAGT1 Silent p.Q197Q 0.78 TCGA-BT-A42B-01 X 96354743 96354743 G C DIAPH2 Missense_Mutation p.E766D 0.86 tolerated(0.2) benign(0.267) TCGA-BT-A42C-01 10 101370476 101370476 C T SLC25A28 3'UTR 0.17 TCGA-BT-A42C-01 10 104687215 104687215 G A CNNM2 Intron 0.27 TCGA-BT-A42C-01 10 115804383 115804383 C A ADRB1 Missense_Mutation p.F164L 0.42 tolerated(0.28) probably_damaging(0.958) TCGA-BT-A42C-01 10 116606315 116606315 C T FAM160B1 Intron 0.25 TCGA-BT-A42C-01 10 118357370 118357370 G T PNLIPRP1 Missense_Mutation p.S202I 0.18 deleterious(0) benign(0.212) TCGA-BT-A42C-01 10 17107518 17107518 C T CUBN Missense_Mutation p.S1043N 0.20 tolerated(1) benign(0) TCGA-BT-A42C-01 10 23250840 23250840 G T ARMC3 Nonsense_Mutation p.E189* 0.19 TCGA-BT-A42C-01 10 51749116 51749116 A G AGAP6 Missense_Mutation p.Q91R 0.08 deleterious_low_confidence(0.01) benign(0.006) TCGA-BT-A42C-01 10 71392625 71392625 C T C10orf35 Missense_Mutation p.A59V 0.05 tolerated(0.11) probably_damaging(0.994) TCGA-BT-A42C-01 10 82280640 82280640 C T TSPAN14 3'UTR 0.09 TCGA-BT-A42C-01 10 85991892 85991892 G A LRIT1 Missense_Mutation p.R555C 0.41 deleterious(0.02) probably_damaging(0.953) TCGA-BT-A42C-01 10 90672881 90672881 C G STAMBPL1 Silent p.L148L 0.29 TCGA-BT-A42C-01 10 93726464 93726464 C T BTAF1 Nonsense_Mutation p.R534* 0.34 TCGA-BT-A42C-01 10 96454775 96454775 C T CYP2C18 Missense_Mutation p.L195F 0.08 deleterious(0.01) benign(0.301) TCGA-BT-A42C-01 10 97951794 97951794 G A BLNK Missense_Mutation p.L436F 0.52 deleterious(0) probably_damaging(1) TCGA-BT-A42C-01 10 99400862 99400862 C G PI4K2A Missense_Mutation p.I121M 0.20 deleterious(0) possibly_damaging(0.908) TCGA-BT-A42C-01 11 102595640 102595640 G A MMP8 5'UTR 0.61 TCGA-BT-A42C-01 11 111369384 111369384 C G BTG4 Missense_Mutation p.E40Q 0.73 deleterious(0.01) probably_damaging(0.939) TCGA-BT-A42C-01 11 123483472 123483472 C G GRAMD1B Silent p.V498V 0.71 TCGA-BT-A42C-01 11 124747869 124747869 G A ROBO3 Missense_Mutation p.R1008K 0.14 tolerated(1) benign(0.006) TCGA-BT-A42C-01 11 16362740 16362740 C T SOX6 Missense_Mutation p.A19T 0.05 tolerated_low_confidence(0.51) benign(0.009) TCGA-BT-A42C-01 11 1651148 1651148 C T KRTAP5-5 Silent p.S26S 0.12 TCGA-BT-A42C-01 11 1651190 1651190 C T KRTAP5-5 Silent p.S40S 0.11 TCGA-BT-A42C-01 11 31824258 31824258 A T PAX6 Silent p.I45I 0.64 TCGA-BT-A42C-01 11 373764 373764 G A B4GALNT4 Missense_Mutation p.R240Q 0.56 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A42C-01 11 51515813 51515813 G C OR4C46 Missense_Mutation p.D178H 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BT-A42C-01 11 55872777 55872777 C A OR8H2 Missense_Mutation p.L87M 0.05 deleterious(0.05) benign(0.175) TCGA-BT-A42C-01 11 57243961 57243961 C G RTN4RL2 Silent p.R280R 0.50 TCGA-BT-A42C-01 11 60183468 60183468 C T MS4A14 Missense_Mutation p.H376Y 0.12 tolerated(0.22) benign(0.025) TCGA-BT-A42C-01 11 61058340 61058340 G C VWCE Missense_Mutation p.Q119E 0.37 tolerated(0.19) benign(0.079) TCGA-BT-A42C-01 11 62557492 62557492 C T TMEM179B Silent p.L211L 0.36 TCGA-BT-A42C-01 11 64889086 64889086 G A FAU Missense_Mutation p.P36S 0.06 tolerated(0.43) benign(0.021) TCGA-BT-A42C-01 11 65272618 65272618 G T MALAT1 RNA 0.17 TCGA-BT-A42C-01 11 65349507 65349507 C T EHBP1L1 Missense_Mutation p.P455L 0.20 deleterious(0) probably_damaging(0.981) TCGA-BT-A42C-01 11 66189921 66189921 G A NPAS4 Splice_Site p.X110_splice 0.23 TCGA-BT-A42C-01 11 66325335 66325335 C G CTD-3074O7.2 3'Flank 0.04 TCGA-BT-A42C-01 11 66359149 66359149 T A CCDC87 Silent p.V446V 0.05 TCGA-BT-A42C-01 11 67269330 67269330 C T PITPNM1 Intron 0.24 TCGA-BT-A42C-01 11 67269467 67269467 C T PITPNM1 Missense_Mutation p.R169Q 0.31 deleterious(0) possibly_damaging(0.599) TCGA-BT-A42C-01 11 67269826 67269826 C T PITPNM1 Missense_Mutation p.D118N 0.25 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 11 67271664 67271664 C T PITPNM1 5'UTR 0.33 TCGA-BT-A42C-01 11 67271718 67271718 C T PITPNM1 Intron 0.40 TCGA-BT-A42C-01 11 68703726 68703726 A G IGHMBP2 Missense_Mutation p.E593G 0.07 deleterious(0) probably_damaging(0.998) TCGA-BT-A42C-01 11 6943088 6943088 C A OR2D3 Missense_Mutation p.L286M 0.18 deleterious(0.03) possibly_damaging(0.489) TCGA-BT-A42C-01 11 69482257 69482257 C T ORAOV1 3'UTR 0.14 TCGA-BT-A42C-01 11 7335059 7335059 G C SYT9 Missense_Mutation p.D311H 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-BT-A42C-01 11 88386506 88386506 G C GRM5 Missense_Mutation p.T326R 0.12 deleterious(0) probably_damaging(1) TCGA-BT-A42C-01 11 94533301 94533301 C A AMOTL1 Missense_Mutation p.F315L 0.12 tolerated(0.07) benign(0.101) TCGA-BT-A42C-01 12 109095064 109095064 G A CORO1C Missense_Mutation p.R11W 0.06 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 12 123011422 123011422 G C RSRC2 5'UTR 0.13 TCGA-BT-A42C-01 12 123072359 123072359 T G KNTC1 Missense_Mutation p.S1278A 0.07 tolerated(0.15) possibly_damaging(0.899) TCGA-BT-A42C-01 12 123078909 123078909 A C KNTC1 Silent p.T1444T 0.36 TCGA-BT-A42C-01 12 123687540 123687540 C A MPHOSPH9 Missense_Mutation p.R319I 0.23 tolerated(0.11) probably_damaging(0.942) TCGA-BT-A42C-01 12 124144458 124144458 C A GTF2H3 Silent p.V267V 0.35 TCGA-BT-A42C-01 12 13065444 13065444 G C GPRC5A Missense_Mutation p.D349H 0.03 deleterious(0.01) possibly_damaging(0.743) TCGA-BT-A42C-01 12 132379547 132379547 A G ULK1 Translation_Start_Site p.M1? 0.36 tolerated_low_confidence(0.06) benign(0.354) TCGA-BT-A42C-01 12 132504716 132504716 G A EP400 Missense_Mutation p.R1467Q 0.21 unknown(0) TCGA-BT-A42C-01 12 13717440 13717440 A C GRIN2B Missense_Mutation p.L911R 0.19 deleterious(0) probably_damaging(0.965) TCGA-BT-A42C-01 12 23999053 23999053 T A SOX5 Missense_Mutation p.E115D 0.08 tolerated(0.3) benign(0.155) TCGA-BT-A42C-01 12 306659 306659 A C SLC6A12 Missense_Mutation p.I320S 0.09 deleterious(0) possibly_damaging(0.751) TCGA-BT-A42C-01 12 4722735 4722735 T C DYRK4 Missense_Mutation p.V460A 0.10 tolerated(0.51) benign(0.001) TCGA-BT-A42C-01 12 49431524 49431524 T C KMT2D Silent p.G3205G 0.17 TCGA-BT-A42C-01 12 49431525 49431525 C A KMT2D Missense_Mutation p.G3205V 0.16 possibly_damaging(0.609) TCGA-BT-A42C-01 12 50232121 50232121 C G BCDIN3D 3'UTR 0.63 TCGA-BT-A42C-01 12 50503383 50503383 C G GPD1 3'UTR 0.31 TCGA-BT-A42C-01 12 550970 550970 C A CCDC77 Missense_Mutation p.L451I 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-BT-A42C-01 12 56435823 56435823 G C RPS26 5'UTR 0.14 TCGA-BT-A42C-01 12 56480394 56480394 G C ERBB3 Silent p.V167V 0.11 TCGA-BT-A42C-01 12 57985171 57985171 C T PIP4K2C Silent p.F33F 0.28 TCGA-BT-A42C-01 12 66639035 66639035 T C IRAK3 Missense_Mutation p.M436T 0.17 deleterious(0.03) possibly_damaging(0.876) TCGA-BT-A42C-01 12 68553296 68553296 G C IFNG Missense_Mutation p.L34V 0.09 deleterious(0) benign(0.288) TCGA-BT-A42C-01 12 69964250 69964250 C G FRS2 Missense_Mutation p.S69W 0.03 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 12 994879 994879 G A WNK1 Missense_Mutation p.E1637K 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BT-A42C-01 12 994963 994963 G A WNK1 Missense_Mutation p.E1665K 0.52 deleterious(0) probably_damaging(0.996) TCGA-BT-A42C-01 13 114778667 114778667 G A RASA3 Missense_Mutation p.A488V 0.71 deleterious(0) probably_damaging(0.998) TCGA-BT-A42C-01 13 25276099 25276099 C A ATP12A Silent p.P642P 0.08 TCGA-BT-A42C-01 13 25281419 25281419 C T ATP12A Missense_Mutation p.R787C 0.28 deleterious(0) probably_damaging(0.995) TCGA-BT-A42C-01 13 32936814 32936814 C T BRCA2 Missense_Mutation p.L2654F 0.47 deleterious(0.02) probably_damaging(1) TCGA-BT-A42C-01 13 32936817 32936817 C T BRCA2 Nonsense_Mutation p.Q2655* 0.46 TCGA-BT-A42C-01 13 32937530 32937530 C T BRCA2 Nonsense_Mutation p.Q2731* 0.60 TCGA-BT-A42C-01 13 32937596 32937596 C T BRCA2 Missense_Mutation p.L2753F 0.25 tolerated(0.08) benign(0.297) TCGA-BT-A42C-01 13 73636804 73636804 C G KLF5 Missense_Mutation p.P356R 0.17 deleterious(0.01) benign(0.147) TCGA-BT-A42C-01 13 95121217 95121217 A C DCT Missense_Mutation p.I126M 0.31 deleterious(0.02) benign(0.197) TCGA-BT-A42C-01 14 106173676 106173676 T C IGHA1 Missense_Mutation p.I297M 0.05 tolerated(0.18) benign(0.056) TCGA-BT-A42C-01 14 107282793 107282793 C G IGHV7-81 Missense_Mutation p.R117T 0.08 deleterious(0) probably_damaging(0.976) TCGA-BT-A42C-01 14 20215775 20215775 T C OR4Q3 Silent p.F63F 0.29 TCGA-BT-A42C-01 14 23533347 23533347 G T ACIN1 Missense_Mutation p.D912E 0.06 benign(0.005) TCGA-BT-A42C-01 14 23829056 23829056 C T EFS Missense_Mutation p.E211K 0.18 tolerated(0.12) probably_damaging(0.965) TCGA-BT-A42C-01 14 24045009 24045009 G C JPH4 Missense_Mutation p.L346V 0.46 tolerated(0.09) benign(0.125) TCGA-BT-A42C-01 14 39646875 39646875 G A PNN Missense_Mutation p.E136K 0.30 tolerated(0.11) benign(0.348) TCGA-BT-A42C-01 14 47504376 47504376 C G MDGA2 Missense_Mutation p.V553L 0.34 tolerated(0.81) benign(0.046) TCGA-BT-A42C-01 14 50458985 50458985 A T C14orf182 3'UTR 0.19 TCGA-BT-A42C-01 14 51288736 51288736 G C NIN Silent p.L13L 0.33 TCGA-BT-A42C-01 14 59791171 59791171 A T DAAM1 Missense_Mutation p.R330W 0.20 deleterious(0.02) unknown(0) TCGA-BT-A42C-01 14 65381210 65381210 C T CHURC1 Silent p.V26V 0.30 TCGA-BT-A42C-01 14 65438797 65438797 C T RAB15 5'UTR 0.12 TCGA-BT-A42C-01 14 70252841 70252841 C - SLC10A1 Frame_Shift_Del p.P181Hfs*12 0.23 TCGA-BT-A42C-01 14 74531433 74531433 C T CCDC176 3'UTR 0.15 TCGA-BT-A42C-01 14 74825233 74825233 G T VRTN Missense_Mutation p.D583Y 0.09 deleterious(0.05) benign(0.074) TCGA-BT-A42C-01 14 94004479 94004479 C T UNC79 Missense_Mutation p.H246Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-BT-A42C-01 15 34080596 34080596 C T RYR3 Missense_Mutation p.A3256V 0.13 possibly_damaging(0.506) TCGA-BT-A42C-01 15 40861663 40861663 G T RPUSD2 Missense_Mutation p.V43F 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.451) TCGA-BT-A42C-01 15 40913273 40913273 A T CASC5 Missense_Mutation p.T297S 0.13 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 15 42003201 42003201 C T MGA Missense_Mutation p.S913L 0.27 tolerated(0.08) benign(0.028) TCGA-BT-A42C-01 15 43662120 43662120 G A ZSCAN29 5'UTR 0.20 TCGA-BT-A42C-01 15 44951440 44951440 G A SPG11 Silent p.I168I 0.24 TCGA-BT-A42C-01 15 50526106 50526106 G C SLC27A2 Missense_Mutation p.E533Q 0.15 tolerated(0.27) benign(0.094) TCGA-BT-A42C-01 15 64017588 64017588 A C HERC1 Silent p.L1157L 0.14 TCGA-BT-A42C-01 15 74963915 74963915 T G EDC3 Missense_Mutation p.D122A 0.06 tolerated(0.1) benign(0.01) TCGA-BT-A42C-01 15 82443993 82443993 G A EFTUD1 Silent p.C934C 0.09 TCGA-BT-A42C-01 15 84581959 84581959 G T ADAMTSL3 Nonsense_Mutation p.E606* 0.21 TCGA-BT-A42C-01 15 85259343 85259343 G A SEC11A 5'UTR 0.36 TCGA-BT-A42C-01 16 10566012 10566012 G A ATF7IP2 Silent p.L466L 0.44 TCGA-BT-A42C-01 16 1400135 1400169 GCCGCAGGCCGCGTACTTGTCCAGGAGCTGGCGGT CC TSR3 In_Frame_Del p.N198_G209delinsR 0.22 TCGA-BT-A42C-01 16 162645 162645 C T NPRL3 Missense_Mutation p.D175N 0.27 deleterious(0) probably_damaging(0.997) TCGA-BT-A42C-01 16 17232337 17232337 C A XYLT1 Missense_Mutation p.D547Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-BT-A42C-01 16 2050414 2050414 G A ZNF598 Missense_Mutation p.P424S 0.09 benign(0.016) TCGA-BT-A42C-01 16 21133386 21133386 G A DNAH3 Silent p.I488I 0.30 TCGA-BT-A42C-01 16 22237249 22237249 G A EEF2K Missense_Mutation p.E67K 0.30 tolerated_low_confidence(0.25) benign(0.013) TCGA-BT-A42C-01 16 30795792 30795792 C G ZNF629 Missense_Mutation p.E4D 0.45 tolerated_low_confidence(0.16) benign(0.001) TCGA-BT-A42C-01 16 30795800 30795800 C T ZNF629 Missense_Mutation p.E2K 0.33 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-BT-A42C-01 16 30964944 30964944 G C ORAI3 Missense_Mutation p.E223Q 0.08 tolerated_low_confidence(0.58) benign(0.003) TCGA-BT-A42C-01 16 30990892 30990892 C A SETD1A Missense_Mutation p.T1262N 0.18 unknown(0) TCGA-BT-A42C-01 16 31195261 31195261 C A FUS Nonsense_Mutation p.Y91* 0.40 TCGA-BT-A42C-01 16 57241994 57241994 G A RSPRY1 Missense_Mutation p.M125I 0.32 tolerated(0.07) benign(0.196) TCGA-BT-A42C-01 16 57687989 57687989 T C GPR56 Missense_Mutation p.W238R 0.11 deleterious(0.02) probably_damaging(0.966) TCGA-BT-A42C-01 16 67515041 67515041 C G ATP6V0D1 5'UTR 0.32 TCGA-BT-A42C-01 16 68405651 68405651 A T SMPD3 Missense_Mutation p.F145Y 0.24 tolerated(0.08) benign(0.003) TCGA-BT-A42C-01 16 71008517 71008517 C A HYDIN Missense_Mutation p.R1610L 0.21 possibly_damaging(0.605) TCGA-BT-A42C-01 16 72153382 72153382 G T PMFBP1 Intron 0.33 TCGA-BT-A42C-01 16 84203923 84203923 G A DNAAF1 Missense_Mutation p.E497K 0.31 tolerated(0.09) benign(0.173) TCGA-BT-A42C-01 16 85100858 85100858 C T KIAA0513 Missense_Mutation p.P61S 0.06 deleterious(0.01) possibly_damaging(0.897) TCGA-BT-A42C-01 16 85114926 85114926 C G KIAA0513 Missense_Mutation p.T303S 0.49 tolerated(0.6) benign(0.044) TCGA-BT-A42C-01 16 85840253 85840253 G T COX4I1 Intron 0.19 TCGA-BT-A42C-01 16 89661901 89661901 T A CPNE7 Missense_Mutation p.F552I 0.04 deleterious(0) possibly_damaging(0.87) TCGA-BT-A42C-01 16 90099213 90099213 C G GAS8 Missense_Mutation p.L126V 0.05 tolerated(0.06) benign(0.245) TCGA-BT-A42C-01 17 10406409 10406409 C T MYH1 Missense_Mutation p.E950K 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-BT-A42C-01 17 10600752 10600752 G C SCO1 Missense_Mutation p.R25G 0.07 deleterious_low_confidence(0.01) benign(0.048) TCGA-BT-A42C-01 17 12656344 12656344 C T MYOCD Missense_Mutation p.P580L 0.06 deleterious(0) probably_damaging(0.957) TCGA-BT-A42C-01 17 1680704 1680704 C G SERPINF1 Silent p.L407L 0.12 TCGA-BT-A42C-01 17 17997132 17997132 G A DRG2 Missense_Mutation p.E24K 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-BT-A42C-01 17 19091383 19091383 G A SNORD3A RNA 0.08 TCGA-BT-A42C-01 17 26087165 26087165 C T NOS2 Missense_Mutation p.R1017H 0.15 deleterious(0.01) benign(0.262) TCGA-BT-A42C-01 17 27064966 27064966 G C NEK8 Missense_Mutation p.G340A 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-BT-A42C-01 17 28417662 28417662 T G EFCAB5 Missense_Mutation p.S1303A 0.21 tolerated(0.09) probably_damaging(0.923) TCGA-BT-A42C-01 17 32597285 32597285 G A CCL7 5'UTR 0.06 TCGA-BT-A42C-01 17 33977553 33977553 C A AP2B1 Missense_Mutation p.S514Y 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-BT-A42C-01 17 37008873 37008892 TGGTTTGCCTTTCTTGACTG - RPL23 Frame_Shift_Del p.T64Rfs*20 0.16 TCGA-BT-A42C-01 17 37265201 37265201 G C PLXDC1 Missense_Mutation p.P142R 0.32 deleterious(0) probably_damaging(0.996) TCGA-BT-A42C-01 17 39991455 39991455 T A NT5C3B Missense_Mutation p.N61Y 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-BT-A42C-01 17 41352619 41352619 T - NBR1 Frame_Shift_Del p.L821Rfs*43 0.26 TCGA-BT-A42C-01 17 41960382 41960382 G C MPP2 Silent p.T114T 0.07 TCGA-BT-A42C-01 17 47590264 47590264 C A NGFR Missense_Mutation p.Q393K 0.42 tolerated(1) benign(0.011) TCGA-BT-A42C-01 17 47590332 47590332 G C NGFR Missense_Mutation p.E415D 0.42 tolerated(0.13) possibly_damaging(0.892) TCGA-BT-A42C-01 17 48156573 48156573 C A ITGA3 Missense_Mutation p.P845H 0.09 tolerated(0.56) benign(0.005) TCGA-BT-A42C-01 17 4836439 4836439 C T GP1BA Silent p.P180P 0.14 TCGA-BT-A42C-01 17 51900906 51900906 G A KIF2B Missense_Mutation p.R171Q 0.28 tolerated(0.08) benign(0.067) TCGA-BT-A42C-01 17 56435956 56435956 G A RNF43 Missense_Mutation p.A394V 0.19 deleterious(0.02) benign(0.034) TCGA-BT-A42C-01 17 57768069 57768082 TATGGTAATCTCTC ATGGTAA CLTC Splice_Site p.X1634_splice 0.25 TCGA-BT-A42C-01 17 59857637 59857637 G C BRIP1 Missense_Mutation p.I640M 0.12 deleterious(0) benign(0.301) TCGA-BT-A42C-01 17 61607729 61607729 G A KCNH6 Silent p.G167G 0.14 TCGA-BT-A42C-01 17 62021175 62021175 C A SCN4A Missense_Mutation p.Q1316H 0.11 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 17 62891163 62891163 G C LRRC37A3 Missense_Mutation p.S738C 0.14 deleterious(0) possibly_damaging(0.884) TCGA-BT-A42C-01 17 7222372 7222372 G C NEURL4 Silent p.L1227L 0.09 TCGA-BT-A42C-01 17 73282503 73282503 G C SLC25A19 Missense_Mutation p.A57G 0.07 tolerated(0.47) benign(0.015) TCGA-BT-A42C-01 17 73498040 73498040 G C CASKIN2 Missense_Mutation p.P1039A 0.07 tolerated(0.69) benign(0.001) TCGA-BT-A42C-01 17 74097809 74097809 T C EXOC7 Missense_Mutation p.I88V 0.10 tolerated(0.06) benign(0.054) TCGA-BT-A42C-01 17 74936492 74936492 C T MGAT5B Silent p.I540I 0.31 TCGA-BT-A42C-01 17 75189528 75189528 C T SEC14L1 Missense_Mutation p.T124I 0.06 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 17 7637562 7637562 G A DNAH2 Missense_Mutation p.M230I 0.30 benign(0.001) TCGA-BT-A42C-01 17 77808858 77808858 G C CBX4 Missense_Mutation p.P195A 0.13 tolerated(0.09) benign(0.06) TCGA-BT-A42C-01 17 78162187 78162187 G C CARD14 Silent p.L229L 0.46 TCGA-BT-A42C-01 17 78195377 78195377 G C SLC26A11 Silent p.T6T 0.51 TCGA-BT-A42C-01 17 80115782 80115782 G A CCDC57 Missense_Mutation p.L695F 0.14 deleterious(0) probably_damaging(0.954) TCGA-BT-A42C-01 18 10671628 10671628 C T PIEZO2 Missense_Mutation p.E2719K 0.29 deleterious(0) possibly_damaging(0.875) TCGA-BT-A42C-01 18 2891874 2891874 G A EMILIN2 Silent p.L583L 0.09 TCGA-BT-A42C-01 18 6986291 6986291 C T LAMA1 Missense_Mutation p.E1742K 0.10 tolerated(0.91) benign(0.033) TCGA-BT-A42C-01 18 9255911 9255911 T A ANKRD12 Missense_Mutation p.H882Q 0.09 tolerated_low_confidence(0.12) benign(0.005) TCGA-BT-A42C-01 18 9255912 9255912 A G ANKRD12 Missense_Mutation p.K883E 0.09 deleterious_low_confidence(0.02) benign(0.405) TCGA-BT-A42C-01 19 10794737 10794737 G C ILF3 Intron 0.10 TCGA-BT-A42C-01 19 12817453 12817453 T C TNPO2 Missense_Mutation p.K476R 0.08 tolerated(0.4) benign(0.003) TCGA-BT-A42C-01 19 1370839 1370839 A G MUM1 Missense_Mutation p.K584R 0.50 tolerated(0.58) possibly_damaging(0.801) TCGA-BT-A42C-01 19 1482922 1482922 C G PCSK4 Missense_Mutation p.E557Q 0.30 tolerated(0.09) probably_damaging(0.958) TCGA-BT-A42C-01 19 15512114 15512114 G C AKAP8L Silent p.L221L 0.47 TCGA-BT-A42C-01 19 18174753 18174753 C T IL12RB1 Silent p.T517T 0.36 TCGA-BT-A42C-01 19 1827792 1827792 G A REXO1 Silent p.G332G 0.53 TCGA-BT-A42C-01 19 18375916 18375916 C T KIAA1683 Missense_Mutation p.V812M 0.13 tolerated(0.16) benign(0.119) TCGA-BT-A42C-01 19 19337300 19337300 C T NCAN Missense_Mutation p.H360Y 0.10 tolerated(0.09) possibly_damaging(0.572) TCGA-BT-A42C-01 19 19546972 19546972 G C GATAD2A Intron 0.28 TCGA-BT-A42C-01 19 20045094 20045094 G A ZNF93 Missense_Mutation p.E444K 0.35 tolerated(1) benign(0.001) TCGA-BT-A42C-01 19 20135146 20135146 G C ZNF682 Missense_Mutation p.L15V 0.28 tolerated(0.16) benign(0.001) TCGA-BT-A42C-01 19 2102196 2102196 C T AP3D1 Missense_Mutation p.M1208I 0.48 tolerated(1) benign(0.043) TCGA-BT-A42C-01 19 22271880 22271880 C A ZNF257 Missense_Mutation p.S443Y 0.39 tolerated(0.35) benign(0.069) TCGA-BT-A42C-01 19 2852510 2852510 A G ZNF555 Silent p.G149G 0.09 TCGA-BT-A42C-01 19 35793494 35793494 G A MAG Missense_Mutation p.E372K 0.16 tolerated(0.11) benign(0.225) TCGA-BT-A42C-01 19 38709684 38709684 G A DPF1 Silent p.L132L 0.12 TCGA-BT-A42C-01 19 39292958 39292958 C G LGALS4 Missense_Mutation p.K219N 0.58 tolerated(0.22) benign(0.024) TCGA-BT-A42C-01 19 4037409 4037409 G A PIAS4 Missense_Mutation p.D394N 0.27 tolerated(0.31) possibly_damaging(0.526) TCGA-BT-A42C-01 19 41822706 41822706 G A CCDC97 Missense_Mutation p.R155H 0.44 deleterious(0) probably_damaging(0.996) TCGA-BT-A42C-01 19 41930481 41930481 G A BCKDHA Missense_Mutation p.E436K 0.21 tolerated(0.19) benign(0.028) TCGA-BT-A42C-01 19 42600386 42600386 G A POU2F2 Missense_Mutation p.R171C 0.18 deleterious(0) possibly_damaging(0.876) TCGA-BT-A42C-01 19 43441225 43441225 C A PSG7 Missense_Mutation p.G2W 0.18 deleterious(0) probably_damaging(0.947) TCGA-BT-A42C-01 19 46216533 46216533 G C FBXO46 Nonsense_Mutation p.S74* 0.11 TCGA-BT-A42C-01 19 47440614 47440614 A T ARHGAP35 Nonsense_Mutation p.K1259* 0.07 TCGA-BT-A42C-01 19 47440617 47440617 C G ARHGAP35 Missense_Mutation p.P1260A 0.07 tolerated(0.15) probably_damaging(0.987) TCGA-BT-A42C-01 19 49110174 49110174 G T SPACA4 5'UTR 0.08 TCGA-BT-A42C-01 19 49218558 49218558 G C MAMSTR Missense_Mutation p.S129C 0.29 tolerated(0.08) benign(0.326) TCGA-BT-A42C-01 19 49254435 49254435 C T FUT1 Missense_Mutation p.G35D 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.548) TCGA-BT-A42C-01 19 50266516 50266516 C T TSKS 5'UTR 0.19 TCGA-BT-A42C-01 19 51020791 51020791 G A LRRC4B 3'UTR 0.34 TCGA-BT-A42C-01 19 55824329 55824329 G A TMEM150B Silent p.A200A 0.08 TCGA-BT-A42C-01 19 57037045 57037045 C G ZNF471 Missense_Mutation p.H537D 0.08 deleterious(0) probably_damaging(0.995) TCGA-BT-A42C-01 19 57803086 57803086 G C ZNF460 Missense_Mutation p.E393Q 0.20 deleterious(0.03) benign(0.123) TCGA-BT-A42C-01 19 58198132 58198132 G A ZNF551 Silent p.K163K 0.55 TCGA-BT-A42C-01 19 58723904 58723904 C A ZNF274 Missense_Mutation p.R452S 0.06 tolerated(0.4) benign(0.006) TCGA-BT-A42C-01 19 9021060 9021060 C A MUC16 Missense_Mutation p.Q12421H 0.06 possibly_damaging(0.881) TCGA-BT-A42C-01 1 10523593 10523593 G T DFFA Missense_Mutation p.Q176K 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-BT-A42C-01 1 11017751 11017751 C T C1orf127 Silent p.L205L 0.42 TCGA-BT-A42C-01 1 111146504 111146504 C T KCNA2 Missense_Mutation p.V301I 0.18 deleterious(0.03) probably_damaging(0.917) TCGA-BT-A42C-01 1 113231458 113231458 C G MOV10 Intron 0.24 TCGA-BT-A42C-01 1 115600206 115600206 G C TSPAN2 Missense_Mutation p.S156R 0.09 tolerated(0.13) possibly_damaging(0.776) TCGA-BT-A42C-01 1 145534181 145534181 T C ITGA10 Silent p.D562D 0.07 TCGA-BT-A42C-01 1 148341967 148341967 G T NBPF20 Missense_Mutation p.D202E 0.02 possibly_damaging(0.747) TCGA-BT-A42C-01 1 150246527 150246527 T A C1orf54 Missense_Mutation p.D28E 0.09 tolerated_low_confidence(0.14) benign(0.002) TCGA-BT-A42C-01 1 150967812 150967812 C T ANXA9 3'UTR 0.48 TCGA-BT-A42C-01 1 151740602 151740602 C T OAZ3 Silent p.H79H 0.40 TCGA-BT-A42C-01 1 152279926 152279926 T G FLG Missense_Mutation p.E2479A 0.07 possibly_damaging(0.78) TCGA-BT-A42C-01 1 155018907 155018907 C T DCST1 Silent p.L480L 0.08 TCGA-BT-A42C-01 1 155172605 155172605 C T THBS3 Missense_Mutation p.E319K 0.23 deleterious(0) probably_damaging(0.991) TCGA-BT-A42C-01 1 155698905 155698905 G A DAP3 Missense_Mutation p.V226I 0.06 tolerated(0.17) benign(0.047) TCGA-BT-A42C-01 1 155912334 155912334 C T RXFP4 Silent p.P278P 0.45 TCGA-BT-A42C-01 1 161021101 161021101 C T ARHGAP30 Intron 0.27 TCGA-BT-A42C-01 1 161021373 161021373 G C ARHGAP30 Missense_Mutation p.S384C 0.15 deleterious(0) probably_damaging(0.928) TCGA-BT-A42C-01 1 161130596 161130596 C T USP21 Missense_Mutation p.P56S 0.04 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-BT-A42C-01 1 161954646 161954646 A G OLFML2B Silent p.Y533Y 0.17 TCGA-BT-A42C-01 1 16200683 16200683 C G SPEN Intron 0.25 TCGA-BT-A42C-01 1 16200760 16200760 C G SPEN Intron 0.16 TCGA-BT-A42C-01 1 16203049 16203049 C G SPEN Missense_Mutation p.Q253E 0.27 probably_damaging(0.966) TCGA-BT-A42C-01 1 16260122 16260130 AGCGATCCA - SPEN In_Frame_Del p.D2464_S2466del 0.09 TCGA-BT-A42C-01 1 166927059 166927059 G A ILDR2 Missense_Mutation p.S109L 0.21 deleterious(0) possibly_damaging(0.536) TCGA-BT-A42C-01 1 17029222 17029222 C G ESPNP RNA 0.04 TCGA-BT-A42C-01 1 173754326 173754326 C T KLHL20 Missense_Mutation p.R591W 0.41 deleterious(0) probably_damaging(0.999) TCGA-BT-A42C-01 1 175336348 175336348 C G TNR Missense_Mutation p.R683S 0.24 tolerated(0.37) probably_damaging(0.999) TCGA-BT-A42C-01 1 186094817 186094817 G C HMCN1 Missense_Mutation p.G4194A 0.27 probably_damaging(0.999) TCGA-BT-A42C-01 1 186114897 186114897 G A HMCN1 Nonsense_Mutation p.W4817* 0.44 TCGA-BT-A42C-01 1 197073065 197073065 C T ASPM Silent p.L1772L 0.13 TCGA-BT-A42C-01 1 206782760 206782760 A C EIF2D Silent p.P100P 0.09 TCGA-BT-A42C-01 1 212617721 212617721 G A NENF Silent p.G93G 0.11 TCGA-BT-A42C-01 1 215792292 215792292 G A KCTD3 Missense_Mutation p.G543R 0.08 deleterious(0) probably_damaging(1) TCGA-BT-A42C-01 1 220233036 220233036 G T BPNT1 Missense_Mutation p.A257D 0.09 deleterious(0) probably_damaging(0.985) TCGA-BT-A42C-01 1 222867175 222867175 G C AIDA Missense_Mutation p.S82C 0.28 tolerated(0.06) possibly_damaging(0.778) TCGA-BT-A42C-01 1 23419953 23419953 C T LUZP1 Missense_Mutation p.E268K 0.38 deleterious(0.03) probably_damaging(0.99) TCGA-BT-A42C-01 1 23420139 23420139 C G LUZP1 Missense_Mutation p.E206Q 0.40 tolerated(1) benign(0.28) TCGA-BT-A42C-01 1 235884050 235884050 G A LYST Silent p.F3157F 0.25 TCGA-BT-A42C-01 1 23763091 23763091 G A ASAP3 Silent p.P511P 0.45 TCGA-BT-A42C-01 1 26691249 26691249 G A ZNF683 Missense_Mutation p.S263F 0.52 tolerated(0.19) probably_damaging(0.946) TCGA-BT-A42C-01 1 27699711 27699711 C G FCN3 Missense_Mutation p.L103F 0.31 deleterious(0) probably_damaging(0.987) TCGA-BT-A42C-01 1 29040947 29040947 A C GMEB1 Missense_Mutation p.T462P 0.23 deleterious(0.01) benign(0.085) TCGA-BT-A42C-01 1 32660872 32660872 G T TXLNA 3'UTR 0.35 TCGA-BT-A42C-01 1 33321593 33321593 G A S100PBP Missense_Mutation p.R394Q 0.28 tolerated(0.09) probably_damaging(0.92) TCGA-BT-A42C-01 1 35365869 35365869 C T DLGAP3 Silent p.P371P 0.09 TCGA-BT-A42C-01 1 38079496 38079496 G A RSPO1 Missense_Mutation p.R169W 0.06 deleterious(0) probably_damaging(0.989) TCGA-BT-A42C-01 1 43224586 43224586 C G LEPRE1 Missense_Mutation p.E293Q 0.44 tolerated(0.55) possibly_damaging(0.617) TCGA-BT-A42C-01 1 43778138 43778138 C T TIE1 Missense_Mutation p.S598L 0.10 tolerated(0.07) benign(0.174) TCGA-BT-A42C-01 1 44087718 44087718 G T PTPRF 3'UTR 0.22 TCGA-BT-A42C-01 1 44482736 44482736 G T SLC6A9 Missense_Mutation p.P24T 0.20 deleterious_low_confidence(0.01) benign(0) TCGA-BT-A42C-01 1 45981460 45981460 G C PRDX1 Missense_Mutation p.F42L 0.54 tolerated(0.09) benign(0.081) TCGA-BT-A42C-01 1 46086690 46086690 G A CCDC17 Missense_Mutation p.S495L 0.50 deleterious(0.01) probably_damaging(1) TCGA-BT-A42C-01 1 46744710 46744710 G T LRRC41 Missense_Mutation p.L756M 0.15 deleterious(0) possibly_damaging(0.82) TCGA-BT-A42C-01 1 53287142 53287142 A C ZYG11B Missense_Mutation p.E692D 0.07 tolerated(0.07) probably_damaging(0.994) TCGA-BT-A42C-01 1 53544320 53544320 C A PODN Missense_Mutation p.R428S 0.23 deleterious(0) probably_damaging(0.99) TCGA-BT-A42C-01 1 62916526 62916526 G C USP1 Missense_Mutation p.E744D 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-BT-A42C-01 1 67155919 67155919 T C SGIP1 Missense_Mutation p.I497T 0.07 tolerated(0.26) benign(0.041) TCGA-BT-A42C-01 1 7723702 7723702 G A CAMTA1 Silent p.G365G 0.08 TCGA-BT-A42C-01 1 7863866 7863866 G T PER3 Missense_Mutation p.S364I 0.46 deleterious(0) benign(0.021) TCGA-BT-A42C-01 1 8617577 8617577 C G RERE Missense_Mutation p.K176N 0.42 probably_damaging(0.977) TCGA-BT-A42C-01 1 94943841 94943841 C G ABCD3 Missense_Mutation p.I218M 0.12 deleterious(0.04) possibly_damaging(0.738) TCGA-BT-A42C-01 20 13971261 13971261 G T SEL1L2 5'UTR 0.22 TCGA-BT-A42C-01 20 21492514 21492514 C T NKX2-2 3'UTR 0.35 TCGA-BT-A42C-01 20 2474630 2474630 T C ZNF343 5'UTR 0.40 TCGA-BT-A42C-01 20 31023699 31023699 C T ASXL1 Missense_Mutation p.P1062S 0.37 tolerated(0.48) benign(0.014) TCGA-BT-A42C-01 20 3305600 3305600 C A C20orf194 Nonsense_Mutation p.E402* 0.23 TCGA-BT-A42C-01 20 33719493 33719493 T A EDEM2 Nonsense_Mutation p.K266* 0.10 TCGA-BT-A42C-01 20 37570599 37570599 T C FAM83D Intron 0.10 TCGA-BT-A42C-01 20 42159033 42159033 C A L3MBTL1 Missense_Mutation p.T367K 0.07 deleterious(0) possibly_damaging(0.902) TCGA-BT-A42C-01 20 43932954 43932954 G A MATN4 Missense_Mutation p.S186L 0.40 probably_damaging(0.992) TCGA-BT-A42C-01 20 44181845 44181845 G A WFDC8 Silent p.D172D 0.06 TCGA-BT-A42C-01 20 45354635 45354635 C A SLC2A10 Silent p.A320A 0.16 TCGA-BT-A42C-01 20 469337 469337 T C CSNK2A1 Missense_Mutation p.N270S 0.59 tolerated(0.11) benign(0.008) TCGA-BT-A42C-01 20 57613514 57613526 CACTTACAGACTT - SLMO2 Splice_Site p.X66_splice 0.17 TCGA-BT-A42C-01 20 60882815 60882815 C T ADRM1 Nonsense_Mutation p.Q263* 0.13 TCGA-BT-A42C-01 20 62850332 62850332 C T MYT1 Missense_Mutation p.R639C 0.10 probably_damaging(0.988) TCGA-BT-A42C-01 20 9400495 9400495 C T PLCB4 Missense_Mutation p.T686I 0.07 tolerated(0.18) possibly_damaging(0.687) TCGA-BT-A42C-01 21 30255351 30255351 T C N6AMT1 Silent p.V59V 0.12 TCGA-BT-A42C-01 21 43704774 43704774 T C ABCG1 Missense_Mutation p.L280P 0.10 deleterious(0) possibly_damaging(0.77) TCGA-BT-A42C-01 21 47858159 47858159 C T PCNT Missense_Mutation p.T3061M 0.07 probably_damaging(0.93) TCGA-BT-A42C-01 22 18845991 18845991 G A BCRP7 Intron 0.14 TCGA-BT-A42C-01 22 29745198 29745206 CTGGCTCAC - AP1B1 Splice_Site p.X479_splice 0.15 TCGA-BT-A42C-01 22 31013431 31013431 G A TCN2 Missense_Mutation p.G352E 0.28 deleterious(0) probably_damaging(0.947) TCGA-BT-A42C-01 22 43950813 43950813 G T EFCAB6 Missense_Mutation p.T1195N 0.12 deleterious(0) probably_damaging(0.958) TCGA-BT-A42C-01 2 103325088 103325088 G C SLC9A2 3'UTR 0.39 TCGA-BT-A42C-01 2 105859329 105859329 G A GPR45 Silent p.L338L 0.09 TCGA-BT-A42C-01 2 111399043 111399043 T C BUB1 Splice_Site p.X876_splice 0.26 TCGA-BT-A42C-01 2 113089651 113089651 G A ZC3H6 Silent p.R1052R 0.40 TCGA-BT-A42C-01 2 113587866 113587866 T A IL1B 3'UTR 0.07 TCGA-BT-A42C-01 2 118854145 118854145 G C INSIG2 Missense_Mutation p.E5Q 0.29 tolerated_low_confidence(0.47) benign(0.012) TCGA-BT-A42C-01 2 120385260 120385260 G C PCDP1 Silent p.R516R 0.11 TCGA-BT-A42C-01 2 120725515 120725515 G A PTPN4 Missense_Mutation p.M887I 0.39 deleterious(0.01) benign(0.114) TCGA-BT-A42C-01 2 121747003 121747003 G C GLI2 Silent p.L1171L 0.07 TCGA-BT-A42C-01 2 132290451 132290451 G C CCDC74A Missense_Mutation p.K297N 0.07 deleterious(0) probably_damaging(0.978) TCGA-BT-A42C-01 2 136575162 136575162 C T LCT Missense_Mutation p.D486N 0.09 tolerated(0.14) benign(0.078) TCGA-BT-A42C-01 2 136575163 136575163 C G LCT Missense_Mutation p.Q485H 0.09 deleterious(0.02) benign(0) TCGA-BT-A42C-01 2 141092027 141092027 G A LRP1B Missense_Mutation p.P4073L 0.33 possibly_damaging(0.908) TCGA-BT-A42C-01 2 141130656 141130656 A C LRP1B Silent p.G3563G 0.06 TCGA-BT-A42C-01 2 15448382 15448382 T A NBAS Silent p.R1585R 0.07 TCGA-BT-A42C-01 2 158178129 158178129 A G ERMN Missense_Mutation p.M183T 0.15 tolerated(0.32) benign(0.146) TCGA-BT-A42C-01 2 159035486 159035486 A G CCDC148 Silent p.L465L 0.39 TCGA-BT-A42C-01 2 159477589 159477589 G C PKP4 Missense_Mutation p.G123A 0.05 tolerated(0.06) benign(0.036) TCGA-BT-A42C-01 2 160257136 160257136 C G BAZ2B Missense_Mutation p.E958Q 0.22 probably_damaging(0.971) TCGA-BT-A42C-01 2 166231228 166231228 T A SCN2A Missense_Mutation p.S1336T 0.06 deleterious(0) probably_damaging(0.997) TCGA-BT-A42C-01 2 172945092 172945092 G A METAP1D Silent p.S322S 0.60 TCGA-BT-A42C-01 2 179417524 179417524 G A TTN Missense_Mutation p.R30035C 0.09 TCGA-BT-A42C-01 2 190718686 190718686 C G PMS1 Missense_Mutation p.L282V 0.09 tolerated(0.22) benign(0.033) TCGA-BT-A42C-01 2 190718983 190718983 C T PMS1 Missense_Mutation p.L329F 0.16 deleterious(0) probably_damaging(0.948) TCGA-BT-A42C-01 2 207619970 207619970 G C MDH1B Missense_Mutation p.L225V 0.56 tolerated(0.19) benign(0.008) TCGA-BT-A42C-01 2 220136071 220136071 T C TUBA4B RNA 0.06 TCGA-BT-A42C-01 2 220238886 220238886 C G DNPEP 3'UTR 0.20 TCGA-BT-A42C-01 2 226447337 226447337 G C NYAP2 Missense_Mutation p.G402R 0.56 tolerated(0.14) probably_damaging(0.92) TCGA-BT-A42C-01 2 27423165 27423165 C T SLC5A6 3'UTR 0.38 TCGA-BT-A42C-01 2 32340842 32340842 G A SPAST Silent p.L314L 0.37 TCGA-BT-A42C-01 2 43808919 43808919 A G THADA Missense_Mutation p.C228R 0.09 deleterious(0.02) possibly_damaging(0.887) TCGA-BT-A42C-01 2 45650 45650 G A FAM110C Missense_Mutation p.L246F 0.08 tolerated(1) benign(0.01) TCGA-BT-A42C-01 2 48027760 48027760 G T MSH6 Missense_Mutation p.D880Y 0.16 deleterious(0.03) possibly_damaging(0.819) TCGA-BT-A42C-01 2 51254845 51254845 G A NRXN1 Silent p.V189V 0.52 TCGA-BT-A42C-01 2 55407749 55407749 G T CLHC1 Nonsense_Mutation p.Y427* 0.39 TCGA-BT-A42C-01 2 55764680 55764680 A G CCDC104 Missense_Mutation p.N200S 0.05 tolerated(0.55) benign(0.001) TCGA-BT-A42C-01 2 61622358 61622358 G A USP34 Missense_Mutation p.T188I 0.48 tolerated(0.08) benign(0) TCGA-BT-A42C-01 2 61697832 61697832 C T USP34 5'UTR 0.30 TCGA-BT-A42C-01 2 67630594 67630594 G C ETAA1 Missense_Mutation p.K260N 0.14 tolerated(0.37) benign(0.297) TCGA-BT-A42C-01 2 69002357 69002357 G T ARHGAP25 Silent p.R22R 0.07 TCGA-BT-A42C-01 2 74779494 74779494 C G LOXL3 Missense_Mutation p.E90Q 0.15 tolerated(0.41) possibly_damaging(0.718) TCGA-BT-A42C-01 2 77748872 77748872 C A LRRTM4 Intron 0.11 TCGA-BT-A42C-01 2 85778102 85778102 C G GGCX Missense_Mutation p.E612Q 0.45 tolerated(0.41) benign(0.046) TCGA-BT-A42C-01 2 9628483 9628483 C T IAH1 3'UTR 0.15 TCGA-BT-A42C-01 2 99463218 99463218 C T KIAA1211L Missense_Mutation p.E16K 0.37 deleterious(0) possibly_damaging(0.486) TCGA-BT-A42C-01 3 10146093 10146093 G T FANCD2OS Missense_Mutation p.D122E 0.03 tolerated(1) benign(0) TCGA-BT-A42C-01 3 109027098 109027098 A C DPPA2 Missense_Mutation p.S147A 0.10 tolerated(0.14) probably_damaging(0.983) TCGA-BT-A42C-01 3 113303564 113303564 G C SIDT1 Missense_Mutation p.W285C 0.10 tolerated(0.18) probably_damaging(0.957) TCGA-BT-A42C-01 3 118623621 118623621 A G IGSF11 Missense_Mutation p.I243T 0.19 deleterious(0) probably_damaging(0.997) TCGA-BT-A42C-01 3 11888150 11888150 G A TAMM41 5'UTR 0.40 TCGA-BT-A42C-01 3 122632378 122632378 C T SEMA5B Intron 0.12 TCGA-BT-A42C-01 3 124436142 124436142 G A KALRN Silent p.L1078L 0.45 TCGA-BT-A42C-01 3 12571305 12571305 C G TSEN2 Missense_Mutation p.S394C 0.32 deleterious(0.04) benign(0.011) TCGA-BT-A42C-01 3 12574341 12574341 C G TSEN2 3'UTR 0.20 TCGA-BT-A42C-01 3 126208204 126208204 C T UROC1 Silent p.L601L 0.36 TCGA-BT-A42C-01 3 132337486 132337486 T C ACAD11 Missense_Mutation p.Q469R 0.16 deleterious(0.02) possibly_damaging(0.757) TCGA-BT-A42C-01 3 133614257 133614257 G T RAB6B Missense_Mutation p.F18L 0.53 tolerated(0.16) benign(0.078) TCGA-BT-A42C-01 3 142116296 142116296 G T XRN1 Nonsense_Mutation p.Y738* 0.08 TCGA-BT-A42C-01 3 147113765 147113765 T G ZIC4 Missense_Mutation p.K238Q 0.08 deleterious(0) possibly_damaging(0.845) TCGA-BT-A42C-01 3 150883748 150883748 C G MED12L Missense_Mutation p.N491K 0.04 tolerated(0.59) benign(0.021) TCGA-BT-A42C-01 3 155208658 155208658 C G PLCH1 Splice_Site p.X758_splice 0.11 TCGA-BT-A42C-01 3 168833343 168833348 GGGGCT - MECOM In_Frame_Del p.Q648_P649del 0.10 TCGA-BT-A42C-01 3 172472376 172472376 C G ECT2 Missense_Mutation p.S19C 0.39 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-BT-A42C-01 3 172472419 172472419 C G ECT2 Missense_Mutation p.N33K 0.50 tolerated_low_confidence(0.06) benign(0.146) TCGA-BT-A42C-01 3 183670874 183670874 C T ABCC5 Silent p.G889G 0.33 TCGA-BT-A42C-01 3 184090596 184090596 C A THPO Missense_Mutation p.G256V 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-BT-A42C-01 3 186015941 186015941 G A DGKG Silent p.H74H 0.13 TCGA-BT-A42C-01 3 197640760 197640760 C T IQCG Missense_Mutation p.E294K 0.03 deleterious(0.03) possibly_damaging(0.882) TCGA-BT-A42C-01 3 24138493 24138493 C G LINC00691 RNA 0.43 TCGA-BT-A42C-01 3 44490077 44490077 C T ZNF445 Silent p.K362K 0.16 TCGA-BT-A42C-01 3 52294439 52294439 C T WDR82 Missense_Mutation p.E169K 0.23 tolerated(0.24) benign(0.013) TCGA-BT-A42C-01 3 52398863 52398863 C G DNAH1 Silent p.L1782L 0.23 TCGA-BT-A42C-01 3 52725636 52725636 G A GNL3 Missense_Mutation p.G287E 0.13 deleterious(0) probably_damaging(1) TCGA-BT-A42C-01 3 58519231 58519231 G T ACOX2 Missense_Mutation p.T175N 0.07 deleterious(0.02) benign(0.344) TCGA-BT-A42C-01 3 71050168 71050168 G T FOXP1 Silent p.A341A 0.18 TCGA-BT-A42C-01 3 75679929 75679929 G A MIR1324 RNA 0.05 TCGA-BT-A42C-01 3 77651383 77651383 C A ROBO2 Silent p.G975G 0.14 TCGA-BT-A42C-01 3 9857772 9857772 G A TTLL3 Intron 0.43 TCGA-BT-A42C-01 4 100228963 100228963 G C ADH1B 3'UTR 0.06 TCGA-BT-A42C-01 4 109663675 109663675 T G ETNPPL Missense_Mutation p.T489P 0.12 deleterious_low_confidence(0.03) benign(0.078) TCGA-BT-A42C-01 4 119951548 119951548 G C SYNPO2 Missense_Mutation p.E540Q 0.49 tolerated(0.12) possibly_damaging(0.612) TCGA-BT-A42C-01 4 123855676 123855676 A G SPATA5 Silent p.L310L 0.17 TCGA-BT-A42C-01 4 141489011 141489011 G A UCP1 Nonsense_Mutation p.Q83* 0.17 TCGA-BT-A42C-01 4 141600892 141600892 C G TBC1D9 Missense_Mutation p.E156Q 0.40 tolerated(0.11) possibly_damaging(0.784) TCGA-BT-A42C-01 4 148406949 148406949 C A EDNRA Missense_Mutation p.T39N 0.38 tolerated_low_confidence(0.48) benign(0.001) TCGA-BT-A42C-01 4 152592325 152592325 C G PET112 3'UTR 0.43 TCGA-BT-A42C-01 4 15437374 15437374 G C C1QTNF7 Missense_Mutation p.V10L 0.05 tolerated(0.84) benign(0.022) TCGA-BT-A42C-01 4 15780060 15780060 C A CD38 Missense_Mutation p.P8Q 0.30 tolerated(0.34) benign(0.091) TCGA-BT-A42C-01 4 160271403 160271403 C G RAPGEF2 Missense_Mutation p.S1115C 0.24 deleterious(0) possibly_damaging(0.886) TCGA-BT-A42C-01 4 177116553 177116553 G T SPATA4 Missense_Mutation p.S54Y 0.44 deleterious(0.01) possibly_damaging(0.664) TCGA-BT-A42C-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.70 deleterious(0) possibly_damaging(0.882) TCGA-BT-A42C-01 4 184431737 184431737 G A ING2 Missense_Mutation p.E159K 0.43 deleterious(0.02) benign(0.368) TCGA-BT-A42C-01 4 25677816 25677816 G A SLC34A2 Silent p.P506P 0.21 TCGA-BT-A42C-01 4 41984468 41984468 C G DCAF4L1 Nonsense_Mutation p.S220* 0.20 TCGA-BT-A42C-01 4 47033934 47033934 C T GABRB1 Silent p.T28T 0.08 TCGA-BT-A42C-01 4 69334597 69334597 G T TMPRSS11E Missense_Mutation p.V87L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A42C-01 4 72263299 72263299 C A SLC4A4 Missense_Mutation p.P246T 0.06 tolerated(0.05) benign(0.216) TCGA-BT-A42C-01 4 83557961 83557961 G A SCD5 Silent p.S195S 0.53 TCGA-BT-A42C-01 4 85672647 85672647 G C WDFY3 Missense_Mutation p.L1988V 0.15 tolerated(0.13) benign(0.008) TCGA-BT-A42C-01 4 85672677 85672677 G C WDFY3 Missense_Mutation p.P1978A 0.13 tolerated(0.49) benign(0.082) TCGA-BT-A42C-01 4 88097923 88097923 T G KLHL8 Silent p.S398S 0.24 TCGA-BT-A42C-01 4 90168779 90168779 C G GPRIN3 3'UTR 0.56 TCGA-BT-A42C-01 5 121330336 121330336 G A SRFBP1 Missense_Mutation p.D81N 0.54 deleterious(0.03) benign(0.395) TCGA-BT-A42C-01 5 127800489 127800489 C G FBN2 Missense_Mutation p.E252Q 0.22 tolerated(0.05) probably_damaging(0.913) TCGA-BT-A42C-01 5 131892890 131892890 C G RAD50 5'UTR 0.65 TCGA-BT-A42C-01 5 134102654 134102654 C G DDX46 Missense_Mutation p.S85C 0.13 deleterious(0.05) unknown(0) TCGA-BT-A42C-01 5 140180995 140180995 C A PCDHA3 Missense_Mutation p.H71Q 0.14 deleterious_low_confidence(0.05) benign(0.409) TCGA-BT-A42C-01 5 140256931 140256931 G T PCDHA12 Missense_Mutation p.G625V 0.37 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-BT-A42C-01 5 140537180 140537180 C T PCDHB17 Missense_Mutation p.S535L 0.50 deleterious_low_confidence(0.02) benign(0.041) TCGA-BT-A42C-01 5 140579906 140579906 G C PCDHB11 Missense_Mutation p.D187H 0.12 deleterious_low_confidence(0.02) benign(0.111) TCGA-BT-A42C-01 5 140763792 140763792 G - PCDHGA7 Frame_Shift_Del p.A443Qfs*31 0.11 TCGA-BT-A42C-01 5 159822193 159822193 C T C5orf54 Missense_Mutation p.C102Y 0.52 deleterious(0.02) possibly_damaging(0.805) TCGA-BT-A42C-01 5 178358250 178358250 G C ZFP2 5'UTR 0.41 TCGA-BT-A42C-01 5 19473804 19473804 G A CDH18 Missense_Mutation p.T635I 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-BT-A42C-01 5 26881714 26881714 G C CDH9 Missense_Mutation p.A634G 0.05 deleterious(0.03) benign(0) TCGA-BT-A42C-01 5 33989503 33989503 C T AMACR Missense_Mutation p.E282K 0.43 deleterious(0) probably_damaging(0.969) TCGA-BT-A42C-01 5 37169135 37169135 C T C5orf42 Missense_Mutation p.D2331N 0.36 tolerated(0.14) benign(0.048) TCGA-BT-A42C-01 5 54737704 54737704 G A PPAP2A Missense_Mutation p.S176F 0.06 deleterious(0) probably_damaging(0.995) TCGA-BT-A42C-01 5 6337301 6337301 C T CTD-2324F15.2 RNA 0.09 TCGA-BT-A42C-01 5 68660651 68660651 G A TAF9 3'UTR 0.25 TCGA-BT-A42C-01 5 70308477 70308477 G A NAIP Missense_Mutation p.T89I 0.09 deleterious(0) possibly_damaging(0.838) TCGA-BT-A42C-01 5 71015207 71015207 G A CARTPT Silent p.E29E 0.05 TCGA-BT-A42C-01 5 72798768 72798768 G A BTF3 Missense_Mutation p.V115M 0.39 deleterious(0.01) possibly_damaging(0.616) TCGA-BT-A42C-01 5 78672000 78672000 T C HOMER1 Silent p.K299K 0.42 TCGA-BT-A42C-01 5 80409473 80409473 G T RASGRF2 Missense_Mutation p.R735I 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-BT-A42C-01 6 116757645 116757645 C T DSE Nonsense_Mutation p.Q672* 0.30 TCGA-BT-A42C-01 6 133014264 133014264 A G VNN1 Missense_Mutation p.L242S 0.60 deleterious(0) probably_damaging(0.998) TCGA-BT-A42C-01 6 144508445 144508445 C G STX11 Silent p.L227L 0.60 TCGA-BT-A42C-01 6 150713540 150713540 G C IYD Missense_Mutation p.D144H 0.10 tolerated(0.07) benign(0.046) TCGA-BT-A42C-01 6 155451184 155451184 G T TIAM2 Missense_Mutation p.S276I 0.68 tolerated(0.11) benign(0.429) TCGA-BT-A42C-01 6 24205258 24205258 T A DCDC2 Missense_Mutation p.D332V 0.06 deleterious(0) possibly_damaging(0.776) TCGA-BT-A42C-01 6 25845738 25845738 C T SLC17A3 Missense_Mutation p.E457K 0.61 deleterious(0.02) benign(0.415) TCGA-BT-A42C-01 6 25921506 25921506 A T SLC17A2 Silent p.G125G 0.13 TCGA-BT-A42C-01 6 27425078 27425078 T A ZNF184 Silent p.T62T 0.08 TCGA-BT-A42C-01 6 27879892 27879892 A T OR2B2 Missense_Mutation p.L69Q 0.32 deleterious(0) probably_damaging(0.977) TCGA-BT-A42C-01 6 28200426 28200426 G C ZSCAN9 Missense_Mutation p.E270Q 0.12 tolerated(0.57) benign(0.055) TCGA-BT-A42C-01 6 30035194 30035194 G T PPP1R11 Nonsense_Mutation p.E3* 0.15 TCGA-BT-A42C-01 6 30652748 30652748 C G PPP1R18 Missense_Mutation p.E350Q 0.05 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-BT-A42C-01 6 30671304 30671305 - T MDC1 Frame_Shift_Ins p.T1858Nfs*30 0.36 TCGA-BT-A42C-01 6 31110756 31110756 G C CCHCR1 Silent p.T825T 0.08 TCGA-BT-A42C-01 6 31733741 31733741 C G VWA7 Silent p.V806V 0.05 TCGA-BT-A42C-01 6 33289243 33289243 C T DAXX Silent p.A103A 0.03 TCGA-BT-A42C-01 6 35773642 35773642 C G LHFPL5 Missense_Mutation p.F65L 0.66 deleterious(0) possibly_damaging(0.575) TCGA-BT-A42C-01 6 36651884 36651885 - G CDKN1A Frame_Shift_Ins p.E3Gfs*33 0.37 TCGA-BT-A42C-01 6 39545887 39545887 C A KIF6 Missense_Mutation p.A376S 0.08 deleterious(0.03) possibly_damaging(0.542) TCGA-BT-A42C-01 6 41126740 41126740 A T TREM2 Missense_Mutation p.F183I 0.09 tolerated(0.06) benign(0.355) TCGA-BT-A42C-01 6 41754506 41754506 C T PRICKLE4 Missense_Mutation p.T265I 0.06 deleterious(0.04) benign(0.096) TCGA-BT-A42C-01 6 78172393 78172393 G A HTR1B Missense_Mutation p.T243M 0.65 tolerated(0.1) possibly_damaging(0.631) TCGA-BT-A42C-01 6 7904949 7904949 G A TXNDC5 Missense_Mutation p.H91Y 0.53 deleterious(0.04) probably_damaging(0.998) TCGA-BT-A42C-01 7 100469281 100469281 C T TRIP6 Silent p.L372L 0.43 TCGA-BT-A42C-01 7 100682960 100682960 A T MUC17 Missense_Mutation p.S2755C 0.03 unknown(0) TCGA-BT-A42C-01 7 100693838 100693838 G A MUC17 Missense_Mutation p.D4266N 0.24 unknown(0) TCGA-BT-A42C-01 7 103197585 103197585 G C RELN Missense_Mutation p.S1879C 0.10 deleterious(0.02) benign(0.001) TCGA-BT-A42C-01 7 131825479 131825493 CAGAGAGGCAGGCGT - PLXNA4 In_Frame_Del p.D1768_S1772del 0.15 TCGA-BT-A42C-01 7 138764694 138764694 T C ZC3HAV1 Silent p.L331L 0.46 TCGA-BT-A42C-01 7 142880649 142880649 C A TAS2R39 Silent p.L46L 0.11 TCGA-BT-A42C-01 7 144015622 144015622 G A OR2A1 Missense_Mutation p.M135I 0.10 deleterious(0.02) benign(0.063) TCGA-BT-A42C-01 7 23682812 23682812 T C CCDC126 3'UTR 0.20 TCGA-BT-A42C-01 7 2978460 2978460 C T CARD11 Silent p.G290G 0.09 TCGA-BT-A42C-01 7 42005113 42005113 C A GLI3 Silent p.P1186P 0.34 TCGA-BT-A42C-01 7 42005561 42005561 G A GLI3 Missense_Mutation p.T1037M 0.22 tolerated(0.24) benign(0.302) TCGA-BT-A42C-01 7 44736090 44736090 G T OGDH Missense_Mutation p.D612Y 0.17 deleterious(0) benign(0.372) TCGA-BT-A42C-01 7 44737336 44737336 G C OGDH Silent p.R771R 0.05 TCGA-BT-A42C-01 7 48412011 48412011 C A ABCA13 Missense_Mutation p.L3684M 0.03 probably_damaging(1) TCGA-BT-A42C-01 7 6084235 6084235 G A EIF2AK1 Missense_Mutation p.H230Y 0.08 deleterious(0.04) possibly_damaging(0.8) TCGA-BT-A42C-01 7 74105441 74105469 ATTGTAAGCATTGTATTTTTATCTTTTGC - GTF2I Splice_Site p.X80_splice 0.23 TCGA-BT-A42C-01 7 81746455 81746455 C T CACNA2D1 Missense_Mutation p.R144K 0.16 tolerated(0.35) benign(0.019) TCGA-BT-A42C-01 7 82451706 82451706 C T PCLO Intron 0.14 TCGA-BT-A42C-01 7 82595105 82595105 T A PCLO Missense_Mutation p.E1333D 0.29 unknown(0) TCGA-BT-A42C-01 7 8475316 8475316 C A NXPH1 5'UTR 0.35 TCGA-BT-A42C-01 7 86416022 86416022 C T GRM3 Missense_Mutation p.A305V 0.14 deleterious(0.04) possibly_damaging(0.484) TCGA-BT-A42C-01 7 99758066 99758066 C T GAL3ST4 Missense_Mutation p.D316N 0.25 tolerated(0.47) benign(0.096) TCGA-BT-A42C-01 8 101075735 101075735 A G RGS22 Missense_Mutation p.F421L 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A42C-01 8 110489537 110489537 C T PKHD1L1 Nonsense_Mutation p.Q3001* 0.42 TCGA-BT-A42C-01 8 12957634 12957634 T A DLC1 Missense_Mutation p.T738S 0.22 tolerated(0.38) probably_damaging(0.997) TCGA-BT-A42C-01 8 12958064 12958064 G A DLC1 Silent p.V594V 0.12 TCGA-BT-A42C-01 8 130760698 130760698 G C GSDMC 3'UTR 0.31 TCGA-BT-A42C-01 8 130760704 130760704 G A GSDMC 3'UTR 0.32 TCGA-BT-A42C-01 8 144643221 144643221 C T GSDMD Missense_Mutation p.S210L 0.10 deleterious(0.02) possibly_damaging(0.744) TCGA-BT-A42C-01 8 17169176 17169176 A G MTMR7 Intron 0.64 TCGA-BT-A42C-01 8 17611869 17611869 G C MTUS1 Missense_Mutation p.T483R 0.34 deleterious(0.01) benign(0.207) TCGA-BT-A42C-01 8 26484809 26484809 G T DPYSL2 Nonsense_Mutation p.E207* 0.05 TCGA-BT-A42C-01 8 35579728 35579728 G T UNC5D Missense_Mutation p.S373I 0.04 tolerated(0.1) benign(0.209) TCGA-BT-A42C-01 8 37603149 37603149 A G ERLIN2 Intron 0.26 TCGA-BT-A42C-01 8 37730513 37730513 C T RAB11FIP1 Missense_Mutation p.A603T 0.23 tolerated(0.1) possibly_damaging(0.526) TCGA-BT-A42C-01 8 8748771 8748771 C G MFHAS1 Missense_Mutation p.D600H 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-BT-A42C-01 9 111970252 111970252 A G EPB41L4B Silent p.C610C 0.13 TCGA-BT-A42C-01 9 115216316 115216316 G C HSDL2 Missense_Mutation p.E297Q 0.15 tolerated(0.36) benign(0.011) TCGA-BT-A42C-01 9 126128573 126128573 G A CRB2 Missense_Mutation p.A228T 0.56 deleterious(0.03) unknown(0) TCGA-BT-A42C-01 9 131356499 131356499 G A SPTAN1 Silent p.L1087L 0.54 TCGA-BT-A42C-01 9 131356542 131356542 G T SPTAN1 Nonsense_Mutation p.E1102* 0.55 TCGA-BT-A42C-01 9 131362362 131362362 G A SPTAN1 Missense_Mutation p.E1183K 0.61 deleterious_low_confidence(0.05) possibly_damaging(0.848) TCGA-BT-A42C-01 9 131367332 131367332 G C SPTAN1 Missense_Mutation p.E1247Q 0.59 deleterious(0.02) probably_damaging(0.962) TCGA-BT-A42C-01 9 131378100 131378100 G A SPTAN1 Missense_Mutation p.D1780N 0.64 deleterious(0.03) probably_damaging(0.985) TCGA-BT-A42C-01 9 131394948 131394948 G A SPTAN1 Missense_Mutation p.E2371K 0.63 deleterious(0.01) probably_damaging(0.994) TCGA-BT-A42C-01 9 131397156 131397156 G A WDR34 Silent p.F342F 0.63 TCGA-BT-A42C-01 9 135802666 135802666 G - TSC1 Frame_Shift_Del p.L45Wfs*17 0.46 TCGA-BT-A42C-01 9 138650354 138650354 G A KCNT1 Missense_Mutation p.G285E 0.53 tolerated(0.06) possibly_damaging(0.77) TCGA-BT-A42C-01 9 140100050 140100050 C G TMEM203 5'UTR 0.25 TCGA-BT-A42C-01 9 15187022 15187022 C T TTC39B Silent p.V469V 0.51 TCGA-BT-A42C-01 9 22451128 22451128 C T DMRTA1 Nonsense_Mutation p.Q245* 0.44 TCGA-BT-A42C-01 9 35102793 35102793 G C STOML2 Missense_Mutation p.P25A 0.30 tolerated(0.2) probably_damaging(0.994) TCGA-BT-A42C-01 9 69200179 69200179 C A FOXD4L6 3'UTR 0.16 TCGA-BT-A42C-01 9 84531730 84531730 G A SPATA31D5P RNA 0.12 TCGA-BT-A42C-01 X 153072223 153072223 C G PDZD4 Missense_Mutation p.E154Q 0.81 deleterious(0) probably_damaging(0.923) TCGA-BT-A42C-01 X 154493642 154493642 C G RAB39B 5'UTR 0.83 TCGA-BT-A42C-01 X 2670373 2670373 C A XG Silent p.R20R 0.37 TCGA-BT-A42C-01 X 38156597 38156597 C T RPGR Missense_Mutation p.E452K 0.36 benign(0.032) TCGA-BT-A42C-01 X 48826378 48826378 C A KCND1 Missense_Mutation p.G101W 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A42C-01 X 48921477 48921477 G A CCDC120 Missense_Mutation p.R90H 0.14 tolerated(0.5) probably_damaging(0.911) TCGA-BT-A42C-01 X 65427138 65427138 G A HEPH Missense_Mutation p.R852Q 0.82 tolerated(0.09) benign(0.004) TCGA-BT-A42E-01 10 116719506 116719506 C G TRUB1 Missense_Mutation p.L155V 0.11 deleterious(0) probably_damaging(0.99) TCGA-BT-A42E-01 10 16949662 16949662 C G CUBN Missense_Mutation p.R2517T 0.31 tolerated(0.23) probably_damaging(0.924) TCGA-BT-A42E-01 10 22856646 22856646 G A PIP4K2A Intron 0.26 TCGA-BT-A42E-01 10 50819479 50819479 C T SLC18A3 Silent p.F231F 0.17 TCGA-BT-A42E-01 10 72498682 72498682 G C ADAMTS14 Missense_Mutation p.G565R 0.46 deleterious(0) probably_damaging(0.989) TCGA-BT-A42E-01 10 90342888 90342888 C T RNLS Silent p.L20L 0.48 TCGA-BT-A42E-01 10 93250985 93250985 G A HECTD2 Missense_Mutation p.R407K 0.16 tolerated(0.21) benign(0.05) TCGA-BT-A42E-01 10 96006247 96006247 G A PLCE1 Missense_Mutation p.V989M 0.41 deleterious(0) probably_damaging(0.953) TCGA-BT-A42E-01 11 104820425 104820425 G C CASP4 Missense_Mutation p.S209C 0.07 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 11 108165783 108165783 C T ATM Nonsense_Mutation p.Q1636* 0.35 TCGA-BT-A42E-01 11 1213058 1213058 C G MUC5AC RNA 0.35 TCGA-BT-A42E-01 11 27402440 27402440 A G LGR4 Splice_Site p.X277_splice 0.62 TCGA-BT-A42E-01 11 65396146 65396146 C T PCNXL3 Silent p.H1261H 0.24 TCGA-BT-A42E-01 11 71724412 71724412 T C NUMA1 Silent p.K1379K 0.23 TCGA-BT-A42E-01 12 112578797 112578797 G C TRAFD1 Missense_Mutation p.E138Q 0.31 tolerated(0.05) benign(0.097) TCGA-BT-A42E-01 12 112583419 112583419 G A TRAFD1 Missense_Mutation p.E294K 0.24 deleterious(0) possibly_damaging(0.623) TCGA-BT-A42E-01 12 120960044 120960044 G A COQ5 Nonsense_Mutation p.Q109* 0.14 TCGA-BT-A42E-01 12 27829454 27829454 C T PPFIBP1 Nonsense_Mutation p.R519* 0.37 TCGA-BT-A42E-01 12 47471522 47471522 A G AMIGO2 Missense_Mutation p.C422R 0.25 deleterious(0) probably_damaging(0.999) TCGA-BT-A42E-01 12 48358029 48358029 C A TMEM106C Missense_Mutation p.Q4K 0.53 tolerated(0.58) benign(0.013) TCGA-BT-A42E-01 12 48543418 48543418 C T ASB8 Missense_Mutation p.G200R 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-BT-A42E-01 12 53005039 53005039 C A KRT73 Silent p.L353L 0.23 TCGA-BT-A42E-01 12 53242650 53242650 G A KRT78 Missense_Mutation p.S22L 0.37 tolerated(0.36) benign(0.307) TCGA-BT-A42E-01 12 67703715 67703715 G A CAND1 Silent p.L1020L 0.33 TCGA-BT-A42E-01 12 71531816 71531816 G C TSPAN8 Missense_Mutation p.L121V 0.28 tolerated(0.08) benign(0.173) TCGA-BT-A42E-01 12 76461231 76461231 C G NAP1L1 Missense_Mutation p.M42I 0.20 tolerated(0.24) benign(0.007) TCGA-BT-A42E-01 12 81472038 81472038 G C ACSS3 Missense_Mutation p.G47R 0.16 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-BT-A42E-01 13 114138263 114138263 C G DCUN1D2 Missense_Mutation p.D38H 0.40 deleterious(0) possibly_damaging(0.548) TCGA-BT-A42E-01 13 39263328 39263328 A C FREM2 Missense_Mutation p.H616P 0.31 deleterious(0.02) benign(0.055) TCGA-BT-A42E-01 14 105413767 105413767 G C AHNAK2 Missense_Mutation p.S2674C 0.48 probably_damaging(0.976) TCGA-BT-A42E-01 14 105452804 105452804 G C C14orf79 Missense_Mutation p.L12F 0.57 tolerated(0.08) possibly_damaging(0.79) TCGA-BT-A42E-01 14 21543035 21543035 G C ARHGEF40 Missense_Mutation p.K382N 0.15 deleterious(0) probably_damaging(0.977) TCGA-BT-A42E-01 14 22554943 22554943 G C TRAV23DV6 Missense_Mutation p.Q23H 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-BT-A42E-01 14 61446417 61446417 C G TRMT5 Missense_Mutation p.E67Q 0.57 tolerated_low_confidence(0.43) benign(0.001) TCGA-BT-A42E-01 14 93119203 93119203 G A RIN3 Silent p.K603K 0.38 TCGA-BT-A42E-01 14 94953706 94953706 C T SERPINA12 Silent p.L393L 0.17 TCGA-BT-A42E-01 15 101120807 101120807 G C LINS Missense_Mutation p.Q81E 0.55 tolerated(0.51) benign(0.005) TCGA-BT-A42E-01 15 25616267 25616267 C T UBE3A Missense_Mutation p.E355K 0.12 tolerated(0.15) benign(0.066) TCGA-BT-A42E-01 15 27182443 27182443 C T GABRA5 Missense_Mutation p.T231M 0.18 deleterious(0.02) possibly_damaging(0.863) TCGA-BT-A42E-01 15 40757594 40757594 G C BAHD1 Missense_Mutation p.E705Q 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-BT-A42E-01 15 59182515 59182515 C T SLTM Missense_Mutation p.E682K 0.46 deleterious(0) unknown(0) TCGA-BT-A42E-01 15 70994351 70994351 G A UACA Intron 0.46 TCGA-BT-A42E-01 15 78755364 78755364 G C IREB2 Missense_Mutation p.W69C 0.51 deleterious(0) probably_damaging(0.99) TCGA-BT-A42E-01 15 93534736 93534736 C G CHD2 Silent p.L1148L 0.56 TCGA-BT-A42E-01 16 11855796 11855796 C G ZC3H7A Missense_Mutation p.R728T 0.48 tolerated(0.15) possibly_damaging(0.597) TCGA-BT-A42E-01 16 11855861 11855861 C T ZC3H7A Missense_Mutation p.M706I 0.26 deleterious(0.01) benign(0.027) TCGA-BT-A42E-01 16 18584376 18584376 C A RP11-457I16.2 5'Flank 0.44 TCGA-BT-A42E-01 16 23197757 23197757 C T SCNN1G Silent p.L55L 0.44 TCGA-BT-A42E-01 16 28488866 28488866 G C CLN3 Missense_Mutation p.L430V 0.39 tolerated(1) benign(0.047) TCGA-BT-A42E-01 16 29998300 29998302 GAA - TAOK2 In_Frame_Del p.E907del 0.25 TCGA-BT-A42E-01 16 4750782 4750782 G C ANKS3 Intron 0.54 TCGA-BT-A42E-01 16 47622879 47622879 C G PHKB Missense_Mutation p.L312V 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-BT-A42E-01 16 48221197 48221197 C T ABCC11 Missense_Mutation p.A950T 0.24 tolerated(0.11) benign(0.028) TCGA-BT-A42E-01 16 89934618 89934618 C T SPIRE2 Silent p.S600S 0.24 TCGA-BT-A42E-01 17 16321139 16321139 C G TRPV2 Missense_Mutation p.Q53E 0.38 tolerated(0.14) benign(0.004) TCGA-BT-A42E-01 17 19648434 19648434 C T ALDH3A1 Silent p.K3K 0.36 TCGA-BT-A42E-01 17 28407164 28407164 G C EFCAB5 Missense_Mutation p.E1034D 0.16 tolerated(0.94) benign(0.004) TCGA-BT-A42E-01 17 28772901 28772901 G C CPD Missense_Mutation p.E912D 0.10 tolerated(0.35) benign(0.061) TCGA-BT-A42E-01 17 35603883 35603883 G A ACACA Silent p.I773I 0.23 TCGA-BT-A42E-01 17 38556186 38556186 G T TOP2A Missense_Mutation p.S1045Y 0.22 tolerated(0.33) possibly_damaging(0.89) TCGA-BT-A42E-01 17 43246265 43246265 G C HEXIM2 Intron 0.24 TCGA-BT-A42E-01 17 43246315 43246315 G C HEXIM2 Intron 0.14 TCGA-BT-A42E-01 17 47295121 47295121 G A ABI3 Silent p.E102E 0.16 TCGA-BT-A42E-01 17 48695256 48695256 C T CACNA1G Missense_Mutation p.A1731V 0.17 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 17 59761240 59761240 G C BRIP1 Nonsense_Mutation p.S1056* 0.31 TCGA-BT-A42E-01 17 7126044 7126044 G C ACADVL Missense_Mutation p.D336H 0.44 deleterious(0.03) benign(0.07) TCGA-BT-A42E-01 17 74774466 74774466 C T MFSD11 3'UTR 0.20 TCGA-BT-A42E-01 17 76490165 76490165 G A DNAH17 Missense_Mutation p.R2107C 0.29 probably_damaging(0.999) TCGA-BT-A42E-01 17 76490166 76490166 G A DNAH17 Silent p.V2106V 0.29 TCGA-BT-A42E-01 18 21495285 21495285 A T LAMA3 Missense_Mutation p.K2559N 0.12 possibly_damaging(0.875) TCGA-BT-A42E-01 18 5434085 5434085 A C EPB41L3 Missense_Mutation p.V214G 0.29 deleterious(0) probably_damaging(0.97) TCGA-BT-A42E-01 19 16902336 16902336 A G NWD1 Missense_Mutation p.H1039R 0.26 tolerated(0.61) benign(0.002) TCGA-BT-A42E-01 19 22155686 22155686 C G ZNF208 Missense_Mutation p.G717A 0.31 tolerated(0.07) possibly_damaging(0.514) TCGA-BT-A42E-01 19 33134246 33134246 G A ANKRD27 Missense_Mutation p.H218Y 0.38 deleterious(0) benign(0.152) TCGA-BT-A42E-01 19 3612139 3612139 C T CACTIN Missense_Mutation p.D687N 0.18 tolerated(0.11) benign(0.059) TCGA-BT-A42E-01 19 37698117 37698117 G A ZNF585B 5'UTR 0.30 TCGA-BT-A42E-01 19 40197836 40197836 G A LGALS14 Silent p.E66E 0.28 TCGA-BT-A42E-01 19 41712222 41712222 G A CYP2S1 Silent p.A448A 0.31 TCGA-BT-A42E-01 19 42301749 42301749 G A CEACAM3 Missense_Mutation p.R98Q 0.10 tolerated(0.07) possibly_damaging(0.661) TCGA-BT-A42E-01 19 42914612 42914612 G C LIPE Silent p.L422L 0.18 TCGA-BT-A42E-01 19 47909680 47909680 G C MEIS3 Intron 0.38 TCGA-BT-A42E-01 19 48197763 48197763 C G GLTSCR1 Missense_Mutation p.S892C 0.36 unknown(0) TCGA-BT-A42E-01 19 51827007 51827007 C T IGLON5 Missense_Mutation p.R84W 0.36 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 19 52034114 52034114 G A SIGLEC6 Missense_Mutation p.T176M 0.18 tolerated(0.07) probably_damaging(0.978) TCGA-BT-A42E-01 19 55112331 55112331 T A LILRA1 3'UTR 0.15 TCGA-BT-A42E-01 19 56952794 56952794 C G ZNF667 Missense_Mutation p.E524Q 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A42E-01 19 58472793 58472793 C T C19orf18 Silent p.E166E 0.59 TCGA-BT-A42E-01 19 58472896 58472896 C G C19orf18 Missense_Mutation p.R132T 0.55 deleterious(0.01) possibly_damaging(0.765) TCGA-BT-A42E-01 19 58945407 58945407 G C ZNF132 Missense_Mutation p.F468L 0.25 deleterious(0) probably_damaging(0.997) TCGA-BT-A42E-01 19 8438674 8438674 G A ANGPTL4 Silent p.K375K 0.13 TCGA-BT-A42E-01 1 101200313 101200313 T C VCAM1 Missense_Mutation p.L683P 0.49 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 1 107867418 107867418 G C NTNG1 Missense_Mutation p.R254T 0.67 deleterious(0) probably_damaging(0.987) TCGA-BT-A42E-01 1 149878363 149878363 G T SV2A Missense_Mutation p.T575K 0.22 tolerated(0.08) probably_damaging(0.911) TCGA-BT-A42E-01 1 152324483 152324483 C T FLG2 Missense_Mutation p.G1927R 0.16 probably_damaging(0.995) TCGA-BT-A42E-01 1 155025187 155025187 G A ADAM15 Silent p.P40P 0.33 TCGA-BT-A42E-01 1 156696939 156696939 G A ISG20L2 Missense_Mutation p.S169F 0.38 tolerated(0.14) benign(0.004) TCGA-BT-A42E-01 1 157548317 157548317 C T FCRL4 Missense_Mutation p.G459E 0.29 tolerated(0.65) benign(0.003) TCGA-BT-A42E-01 1 176564145 176564145 C T PAPPA2 Missense_Mutation p.P469S 0.21 tolerated(0.12) benign(0.035) TCGA-BT-A42E-01 1 183920204 183920204 C T COLGALT2 Missense_Mutation p.R358Q 0.44 deleterious(0.01) possibly_damaging(0.473) TCGA-BT-A42E-01 1 185969307 185969307 G C HMCN1 Missense_Mutation p.E1335D 0.21 benign(0.012) TCGA-BT-A42E-01 1 193091303 193091303 C G CDC73 5'UTR 0.31 TCGA-BT-A42E-01 1 212799611 212799611 C T FAM71A Silent p.F464F 0.49 TCGA-BT-A42E-01 1 215256571 215256571 T C KCNK2 5'Flank 0.13 TCGA-BT-A42E-01 1 215793777 215793777 G A KCTD3 Silent p.K755K 0.34 TCGA-BT-A42E-01 1 230398203 230398203 G C GALNT2 Intron 0.36 TCGA-BT-A42E-01 1 230398281 230398281 G C GALNT2 Intron 0.23 TCGA-BT-A42E-01 1 230398353 230398353 G A GALNT2 Missense_Mutation p.E391K 0.35 deleterious(0.01) benign(0.111) TCGA-BT-A42E-01 1 40214601 40214601 G A PPIE Missense_Mutation p.E179K 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-BT-A42E-01 1 43892848 43892848 C T SZT2 Missense_Mutation p.S1087L 0.24 tolerated(0.08) benign(0.017) TCGA-BT-A42E-01 1 45809401 45809401 G C TOE1 3'UTR 0.31 TCGA-BT-A42E-01 1 46877299 46877299 C G FAAH Silent p.L444L 0.29 TCGA-BT-A42E-01 1 47609494 47609494 G C CYP4A22 Missense_Mutation p.M232I 0.32 tolerated(0.62) benign(0.001) TCGA-BT-A42E-01 1 79383520 79383520 G C ELTD1 Silent p.T559T 0.55 TCGA-BT-A42E-01 1 79403928 79403928 C G ELTD1 Missense_Mutation p.E145Q 0.40 deleterious(0) possibly_damaging(0.861) TCGA-BT-A42E-01 1 87029361 87029361 G A CLCA4 Missense_Mutation p.E156K 0.68 deleterious(0.01) probably_damaging(0.91) TCGA-BT-A42E-01 20 3147524 3147524 A T LZTS3 Missense_Mutation p.S96T 0.20 tolerated(0.41) possibly_damaging(0.827) TCGA-BT-A42E-01 20 33583205 33583205 G A MYH7B Missense_Mutation p.E965K 0.19 probably_damaging(0.997) TCGA-BT-A42E-01 20 43850871 43850871 G C SEMG2 Missense_Mutation p.E200Q 0.23 tolerated(0.17) probably_damaging(0.996) TCGA-BT-A42E-01 20 48604460 48604460 C G SNAI1 Missense_Mutation p.S221C 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-BT-A42E-01 20 6096680 6096680 C G FERMT1 Missense_Mutation p.D55H 0.31 deleterious(0) probably_damaging(0.998) TCGA-BT-A42E-01 20 61870741 61870741 G A BIRC7 Silent p.A227A 0.40 TCGA-BT-A42E-01 21 34166208 34166208 G A C21orf62 Silent p.F175F 0.44 TCGA-BT-A42E-01 22 21354150 21354150 C T THAP7 3'UTR 0.08 TCGA-BT-A42E-01 22 31685271 31685271 C G PIK3IP1 Intron 0.35 TCGA-BT-A42E-01 22 36691645 36691645 C G MYH9 Missense_Mutation p.E1131Q 0.20 probably_damaging(0.976) TCGA-BT-A42E-01 22 41605741 41605741 C T L3MBTL2 Silent p.D22D 0.18 TCGA-BT-A42E-01 22 43442436 43442436 G A TTLL1 Silent p.V374V 0.16 TCGA-BT-A42E-01 22 43442529 43442529 G C TTLL1 Silent p.L343L 0.22 TCGA-BT-A42E-01 2 11052945 11052945 G A KCNF1 Silent p.L131L 0.28 TCGA-BT-A42E-01 2 165378494 165378494 G C GRB14 Nonsense_Mutation p.S271* 0.28 TCGA-BT-A42E-01 2 168101230 168101230 G C XIRP2 Missense_Mutation p.V1110L 0.24 possibly_damaging(0.702) TCGA-BT-A42E-01 2 175432604 175432604 C G WIPF1 Missense_Mutation p.D443H 0.16 deleterious(0) possibly_damaging(0.557) TCGA-BT-A42E-01 2 179641333 179641333 A G TTN Missense_Mutation p.M1753T 0.30 TCGA-BT-A42E-01 2 183800087 183800087 C G NCKAP1 Missense_Mutation p.L910F 0.24 deleterious(0) possibly_damaging(0.749) TCGA-BT-A42E-01 2 187533578 187533578 C G ITGAV Missense_Mutation p.I841M 0.52 deleterious(0.05) probably_damaging(1) TCGA-BT-A42E-01 2 202900796 202900796 G T FZD7 Missense_Mutation p.V476L 0.57 tolerated(0.08) possibly_damaging(0.649) TCGA-BT-A42E-01 2 204002917 204002917 C G NBEAL1 Nonsense_Mutation p.S1504* 0.38 TCGA-BT-A42E-01 2 204003001 204003001 C T NBEAL1 Missense_Mutation p.S1532L 0.37 deleterious(0.01) benign(0.103) TCGA-BT-A42E-01 2 220348616 220348616 G A SPEG Missense_Mutation p.R2144Q 0.45 probably_damaging(0.998) TCGA-BT-A42E-01 2 220431681 220431681 G A OBSL1 Missense_Mutation p.R669W 0.29 deleterious(0) possibly_damaging(0.82) TCGA-BT-A42E-01 2 231682512 231682512 T C CAB39 Missense_Mutation p.M246T 0.53 deleterious(0) probably_damaging(0.992) TCGA-BT-A42E-01 2 239307435 239307435 G A TRAF3IP1 Missense_Mutation p.A651T 0.46 tolerated(0.08) possibly_damaging(0.577) TCGA-BT-A42E-01 2 239307510 239307510 G C TRAF3IP1 Missense_Mutation p.E676Q 0.37 deleterious(0.01) possibly_damaging(0.842) TCGA-BT-A42E-01 2 29073346 29073346 G C SPDYA 3'UTR 0.20 TCGA-BT-A42E-01 2 55523533 55523533 C G CCDC88A Missense_Mutation p.R1650T 0.13 tolerated(0.1) benign(0.06) TCGA-BT-A42E-01 2 67637075 67637075 G A ETAA1 Missense_Mutation p.E896K 0.43 deleterious(0.01) probably_damaging(0.968) TCGA-BT-A42E-01 2 74753938 74753938 C G AUP1 Missense_Mutation p.E408Q 0.34 tolerated_low_confidence(0.06) benign(0.323) TCGA-BT-A42E-01 2 75720316 75720316 C G EVA1A 3'UTR 0.33 TCGA-BT-A42E-01 3 10083234 10083234 T G FANCD2 Intron 0.43 TCGA-BT-A42E-01 3 101573954 101573954 G T NFKBIZ Missense_Mutation p.D498Y 0.21 deleterious(0.02) possibly_damaging(0.791) TCGA-BT-A42E-01 3 11068043 11068043 C G SLC6A1 Nonsense_Mutation p.S359* 0.08 TCGA-BT-A42E-01 3 119205696 119205696 G C POGLUT1 Missense_Mutation p.D219H 0.27 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 3 164733747 164733747 A G SI Missense_Mutation p.I1294T 0.38 tolerated(0.07) possibly_damaging(0.904) TCGA-BT-A42E-01 3 164751199 164751199 G A SI Missense_Mutation p.T850I 0.19 tolerated(0.16) benign(0.054) TCGA-BT-A42E-01 3 172048497 172048497 G A FNDC3B Missense_Mutation p.D516N 0.61 deleterious(0.01) benign(0.045) TCGA-BT-A42E-01 3 179137286 179137286 G C GNB4 Nonsense_Mutation p.S35* 0.36 TCGA-BT-A42E-01 3 183854514 183854514 G T EIF2B5 Nonsense_Mutation p.E104* 0.17 TCGA-BT-A42E-01 3 185636158 185636158 G A TRA2B Missense_Mutation p.S284L 0.22 deleterious_low_confidence(0.01) benign(0.184) TCGA-BT-A42E-01 3 33038487 33038487 C G GLB1 3'UTR 0.39 TCGA-BT-A42E-01 3 44762679 44762679 G C ZNF502 Missense_Mutation p.E124Q 0.49 tolerated(0.11) benign(0.08) TCGA-BT-A42E-01 3 58494664 58494664 C T ACOX2 Missense_Mutation p.E647K 0.47 deleterious(0.01) possibly_damaging(0.804) TCGA-BT-A42E-01 4 123813437 123813437 G A FGF2 Silent p.R251R 0.45 TCGA-BT-A42E-01 4 146806995 146806995 C T ZNF827 Missense_Mutation p.E528K 0.36 tolerated(0.13) benign(0.093) TCGA-BT-A42E-01 4 155312447 155312447 C T DCHS2 Translation_Start_Site p.M1? 0.50 deleterious_low_confidence(0) benign(0.001) TCGA-BT-A42E-01 4 171009579 171009579 C T AADAT Missense_Mutation p.M68I 0.49 tolerated(0.07) benign(0.137) TCGA-BT-A42E-01 4 178243642 178243642 G A NEIL3 Silent p.Q62Q 0.58 TCGA-BT-A42E-01 4 6621769 6621769 G C MAN2B2 Missense_Mutation p.R977T 0.38 tolerated(0.31) benign(0.064) TCGA-BT-A42E-01 4 69101912 69101912 G A TMPRSS11B Missense_Mutation p.A66V 0.35 tolerated(0.47) benign(0.004) TCGA-BT-A42E-01 5 137089588 137089588 G C HNRNPA0 Silent p.S56S 0.26 TCGA-BT-A42E-01 5 140176525 140176525 T G PCDHA2 Missense_Mutation p.L659W 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-BT-A42E-01 5 140562889 140562889 C T PCDHB16 Missense_Mutation p.P252L 0.40 tolerated_low_confidence(0.25) benign(0.33) TCGA-BT-A42E-01 5 14502747 14502747 G A TRIO Missense_Mutation p.E2798K 0.27 unknown(0) TCGA-BT-A42E-01 5 156589852 156589852 T C FAM71B Missense_Mutation p.N475S 0.38 tolerated(0.75) benign(0.009) TCGA-BT-A42E-01 5 17354060 17354060 C G CTD-2139B15.2 RNA 0.33 TCGA-BT-A42E-01 5 37008185 37008185 A C NIPBL Missense_Mutation p.T1439P 0.21 deleterious(0) probably_damaging(0.997) TCGA-BT-A42E-01 5 66479990 66479990 C T CD180 Silent p.L227L 0.39 TCGA-BT-A42E-01 6 143091303 143091303 C G HIVEP2 Missense_Mutation p.D1525H 0.17 tolerated(0.56) probably_damaging(0.999) TCGA-BT-A42E-01 6 144860503 144860503 C T UTRN Missense_Mutation p.S2148L 0.33 tolerated(0.34) benign(0.007) TCGA-BT-A42E-01 6 160430152 160430152 T C IGF2R Missense_Mutation p.C134R 0.49 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 6 29407904 29407904 G A OR10C1 Missense_Mutation p.V38M 0.16 deleterious(0.02) benign(0.342) TCGA-BT-A42E-01 6 29523936 29523936 G T UBD Silent p.T73T 0.24 TCGA-BT-A42E-01 6 33036461 33036461 G C HLA-DPA1 Missense_Mutation p.S250C 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-BT-A42E-01 6 33036806 33036806 G C HLA-DPA1 Silent p.L206L 0.31 TCGA-BT-A42E-01 6 33036864 33036864 G A HLA-DPA1 Missense_Mutation p.S187L 0.29 deleterious(0.03) benign(0.044) TCGA-BT-A42E-01 6 33037013 33037013 G C HLA-DPA1 Missense_Mutation p.I137M 0.26 deleterious(0) probably_damaging(0.997) TCGA-BT-A42E-01 6 33359660 33359660 C T KIFC1 5'UTR 0.27 TCGA-BT-A42E-01 6 33359671 33359671 C T KIFC1 5'UTR 0.27 TCGA-BT-A42E-01 6 38794053 38794053 G A DNAH8 Silent p.L1106L 0.15 TCGA-BT-A42E-01 6 38796008 38796008 G A DNAH8 Missense_Mutation p.E1161K 0.14 possibly_damaging(0.496) TCGA-BT-A42E-01 6 44218782 44218782 C G HSP90AB1 Intron 0.30 TCGA-BT-A42E-01 6 53519801 53519801 G C KLHL31 Silent p.V90V 0.31 TCGA-BT-A42E-01 6 64421877 64421877 C G PHF3 Missense_Mutation p.P1465A 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-BT-A42E-01 6 75838090 75838090 C T COL12A1 Missense_Mutation p.D2088N 0.18 probably_damaging(0.999) TCGA-BT-A42E-01 6 79713497 79713497 G A PHIP Missense_Mutation p.H535Y 0.16 deleterious(0) possibly_damaging(0.838) TCGA-BT-A42E-01 6 82941441 82941441 G A IBTK Silent p.I179I 0.31 TCGA-BT-A42E-01 6 90402717 90402717 C T MDN1 Silent p.Q3344Q 0.18 TCGA-BT-A42E-01 7 104753397 104753397 C T KMT2E Missense_Mutation p.H1732Y 0.30 deleterious_low_confidence(0) benign(0.152) TCGA-BT-A42E-01 7 11022349 11022349 A G PHF14 Missense_Mutation p.T155A 0.31 tolerated_low_confidence(0.4) unknown(0) TCGA-BT-A42E-01 7 113559074 113559074 G C PPP1R3A 5'UTR 0.38 TCGA-BT-A42E-01 7 120969787 120969787 G T WNT16 Nonsense_Mutation p.E88* 0.30 TCGA-BT-A42E-01 7 121568216 121568216 C T PTPRZ1 Missense_Mutation p.A22V 0.25 tolerated(0.36) benign(0.008) TCGA-BT-A42E-01 7 121716533 121716533 T C AASS 3'UTR 0.30 TCGA-BT-A42E-01 7 127732072 127732072 C T SND1 Nonsense_Mutation p.R899* 0.30 TCGA-BT-A42E-01 7 148768286 148768286 C T ZNF786 Silent p.E526E 0.32 TCGA-BT-A42E-01 7 37264523 37264523 T C ELMO1 Missense_Mutation p.Q221R 0.29 tolerated(0.32) possibly_damaging(0.507) TCGA-BT-A42E-01 7 43546778 43546778 G C HECW1 Missense_Mutation p.R1225T 0.34 deleterious(0) probably_damaging(0.993) TCGA-BT-A42E-01 7 44153669 44153669 G A AEBP1 Missense_Mutation p.E1096K 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-BT-A42E-01 7 55211118 55211118 G T EGFR Missense_Mutation p.V121F 0.37 deleterious(0) possibly_damaging(0.905) TCGA-BT-A42E-01 7 5751425 5751425 C T RNF216 Silent p.K676K 0.35 TCGA-BT-A42E-01 7 74211723 74211723 C T GTF2IRD2 Missense_Mutation p.E710K 0.35 tolerated(0.2) benign(0.08) TCGA-BT-A42E-01 7 82538327 82538327 A G PCLO Missense_Mutation p.Y4435H 0.12 unknown(0) TCGA-BT-A42E-01 7 88964899 88964899 G C ZNF804B Missense_Mutation p.S868T 0.23 tolerated(0.56) benign(0.126) TCGA-BT-A42E-01 7 99725124 99725124 G A MBLAC1 Missense_Mutation p.D36N 0.45 tolerated(0.38) benign(0.005) TCGA-BT-A42E-01 7 99725577 99725577 G A MBLAC1 Missense_Mutation p.V187M 0.44 deleterious(0) probably_damaging(0.998) TCGA-BT-A42E-01 8 123965696 123965696 G C ZHX2 Missense_Mutation p.R649T 0.17 deleterious(0) probably_damaging(0.978) TCGA-BT-A42E-01 8 124810338 124810338 C T FAM91A1 Silent p.L474L 0.44 TCGA-BT-A42E-01 8 18258439 18258439 C T NAT2 3'UTR 0.59 TCGA-BT-A42E-01 8 39785441 39785441 C T IDO1 Missense_Mutation p.R317C 0.55 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 8 49643103 49643103 C G EFCAB1 Missense_Mutation p.M105I 0.36 tolerated(1) benign(0.002) TCGA-BT-A42E-01 8 72756331 72756331 C T MSC Missense_Mutation p.R28K 0.24 tolerated_low_confidence(0.12) benign(0.001) TCGA-BT-A42E-01 8 72967687 72967688 - T TRPA1 Frame_Shift_Ins p.G505Rfs*7 0.10 TCGA-BT-A42E-01 8 86250478 86250478 C T CA1 Intron 0.58 TCGA-BT-A42E-01 9 113192631 113192631 C A SVEP1 Missense_Mutation p.G1818V 0.14 probably_damaging(1) TCGA-BT-A42E-01 9 131351151 131351151 C T SPTAN1 Nonsense_Mutation p.Q979* 0.77 TCGA-BT-A42E-01 9 136402606 136402606 C T ADAMTSL2 Missense_Mutation p.T57M 0.68 deleterious(0) probably_damaging(0.996) TCGA-BT-A42E-01 9 139342332 139342332 C G SEC16A Missense_Mutation p.W2140C 0.62 deleterious(0) probably_damaging(0.999) TCGA-BT-A42E-01 9 178856 178856 G A CBWD1 Silent p.L38L 0.68 TCGA-BT-A42E-01 9 18753445 18753445 C T ADAMTSL1 Missense_Mutation p.T719M 0.57 tolerated(0.06) benign(0.042) TCGA-BT-A42E-01 9 8633417 8633417 T C PTPRD Missense_Mutation p.I84M 0.44 deleterious(0) probably_damaging(0.991) TCGA-BT-A42E-01 X 123224587 123224587 A - STAG2 Frame_Shift_Del p.E1147Dfs*13 0.32 TCGA-BT-A42E-01 X 136113450 136113450 A T GPR101 Missense_Mutation p.D128E 0.20 deleterious(0) probably_damaging(1) TCGA-BT-A42E-01 X 142803825 142803825 T C SPANXN2 5'UTR 0.68 TCGA-BT-A42E-01 X 18198653 18198653 G C BEND2 Missense_Mutation p.S469C 0.62 deleterious(0.01) benign(0.05) TCGA-BT-A42E-01 X 30712535 30712535 C G GK Missense_Mutation p.L145V 0.79 tolerated(0.12) benign(0.036) TCGA-BT-A42F-01 10 112266722 112266722 C G DUSP5 Silent p.L186L 0.06 TCGA-BT-A42F-01 10 112266779 112266779 C A DUSP5 Silent p.I205I 0.05 TCGA-BT-A42F-01 10 5494360 5494360 G A NET1 Missense_Mutation p.A135T 0.12 tolerated(0.27) benign(0.005) TCGA-BT-A42F-01 10 88930307 88930307 G C FAM35A Missense_Mutation p.R569T 0.08 tolerated(0.06) possibly_damaging(0.466) TCGA-BT-A42F-01 10 91198622 91198622 G A SLC16A12 Missense_Mutation p.S256L 0.14 tolerated(0.19) benign(0.005) TCGA-BT-A42F-01 10 95360731 95360731 C G RBP4 Missense_Mutation p.E19Q 0.11 tolerated(0.56) benign(0.006) TCGA-BT-A42F-01 10 97181762 97181762 C G SORBS1 Missense_Mutation p.G133R 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-BT-A42F-01 11 1097190 1097190 G A MUC2 Silent p.V2202V 0.08 TCGA-BT-A42F-01 11 12261014 12261014 C G MICAL2 Missense_Mutation p.S699C 0.12 tolerated(0.09) benign(0.005) TCGA-BT-A42F-01 11 128642864 128642864 C T FLI1 Silent p.L191L 0.13 TCGA-BT-A42F-01 11 134121168 134121168 C G THYN1 Missense_Mutation p.E26D 0.09 tolerated(0.2) benign(0.004) TCGA-BT-A42F-01 11 19253837 19253837 C G E2F8 Missense_Mutation p.R337T 0.15 deleterious(0) probably_damaging(0.995) TCGA-BT-A42F-01 11 5255574 5255574 G T HBD Silent p.G30G 0.11 TCGA-BT-A42F-01 11 64126893 64126893 C T RPS6KA4 Silent p.F33F 0.14 TCGA-BT-A42F-01 11 64518843 64518843 G C PYGM Silent p.L641L 0.11 TCGA-BT-A42F-01 11 65426193 65426193 C G RELA Missense_Mutation p.Q220H 0.06 deleterious(0) probably_damaging(0.996) TCGA-BT-A42F-01 11 65426220 65426220 C G RELA Missense_Mutation p.E211D 0.07 deleterious(0) probably_damaging(0.921) TCGA-BT-A42F-01 12 104171841 104171841 G C NT5DC3 Missense_Mutation p.F471L 0.10 tolerated(1) benign(0.002) TCGA-BT-A42F-01 12 107395596 107395596 G A CRY1 Missense_Mutation p.P181S 0.07 deleterious(0.04) probably_damaging(0.949) TCGA-BT-A42F-01 12 111296516 111296516 T G CCDC63 Silent p.T102T 0.06 TCGA-BT-A42F-01 12 113400538 113400538 G T OAS3 Missense_Mutation p.A639S 0.22 deleterious(0) probably_damaging(0.996) TCGA-BT-A42F-01 12 113400539 113400539 C G OAS3 Missense_Mutation p.A639G 0.23 deleterious(0) probably_damaging(0.996) TCGA-BT-A42F-01 12 131293204 131293204 G A STX2 Missense_Mutation p.S109L 0.11 deleterious(0) probably_damaging(0.995) TCGA-BT-A42F-01 12 132446340 132446340 C G EP400 Missense_Mutation p.F392L 0.12 unknown(0) TCGA-BT-A42F-01 12 2968709 2968709 C T FOXM1 Missense_Mutation p.E501K 0.18 tolerated(0.23) benign(0.138) TCGA-BT-A42F-01 12 50594581 50594581 G A LIMA1 Silent p.I317I 0.09 TCGA-BT-A42F-01 12 88514917 88514917 G A CEP290 Missense_Mutation p.H406Y 0.21 benign(0.315) TCGA-BT-A42F-01 13 107148121 107148121 C T EFNB2 Missense_Mutation p.M158I 0.07 deleterious(0) probably_damaging(0.973) TCGA-BT-A42F-01 13 109562376 109562376 G C MYO16 Missense_Mutation p.E579D 0.09 deleterious(0) possibly_damaging(0.734) TCGA-BT-A42F-01 13 25283942 25283942 G A ATP12A Silent p.L919L 0.07 TCGA-BT-A42F-01 13 32729676 32729676 C T FRY Nonsense_Mutation p.Q510* 0.10 TCGA-BT-A42F-01 13 42876840 42876840 C G AKAP11 Missense_Mutation p.L1320V 0.18 deleterious(0.04) possibly_damaging(0.523) TCGA-BT-A42F-01 13 79190446 79190446 C G RNF219 Missense_Mutation p.E484Q 0.10 deleterious(0.05) probably_damaging(0.925) TCGA-BT-A42F-01 14 24731443 24731443 C T TGM1 Missense_Mutation p.G39E 0.07 tolerated_low_confidence(0.21) benign(0.03) TCGA-BT-A42F-01 14 53130536 53130536 G C ERO1L Missense_Mutation p.P220R 0.09 deleterious(0) probably_damaging(0.999) TCGA-BT-A42F-01 14 72985234 72985234 G C RGS6 Missense_Mutation p.E423Q 0.13 deleterious(0) benign(0.147) TCGA-BT-A42F-01 14 75514029 75514029 C T MLH3 Missense_Mutation p.G777E 0.13 tolerated(1) benign(0) TCGA-BT-A42F-01 15 41319844 41319844 G A INO80 Missense_Mutation p.R1000C 0.12 tolerated(0.14) benign(0) TCGA-BT-A42F-01 15 41319864 41319864 G A INO80 Missense_Mutation p.S993L 0.09 tolerated(0.13) benign(0.001) TCGA-BT-A42F-01 15 41319874 41319874 G A INO80 Nonsense_Mutation p.Q990* 0.08 TCGA-BT-A42F-01 15 42171929 42171929 C T SPTBN5 Intron 0.13 TCGA-BT-A42F-01 15 43441294 43441294 C T TMEM62 Missense_Mutation p.R271C 0.16 deleterious(0.02) probably_damaging(0.975) TCGA-BT-A42F-01 15 56385940 56385940 G C RFX7 Missense_Mutation p.S1329C 0.12 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-BT-A42F-01 15 56387722 56387722 G C RFX7 Missense_Mutation p.S735C 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.455) TCGA-BT-A42F-01 15 66601047 66601047 G C DIS3L Missense_Mutation p.R141S 0.13 deleterious(0) probably_damaging(0.986) TCGA-BT-A42F-01 15 72244159 72244159 C T MYO9A Missense_Mutation p.R754K 0.06 deleterious(0.05) possibly_damaging(0.573) TCGA-BT-A42F-01 15 75500351 75500351 C G C15orf39 Missense_Mutation p.F654L 0.12 deleterious(0) benign(0) TCGA-BT-A42F-01 15 77907712 77907712 G A LINGO1 Silent p.L179L 0.09 TCGA-BT-A42F-01 15 90020320 90020320 G A RHCG Silent p.I410I 0.07 TCGA-BT-A42F-01 16 11933740 11933740 C G RSL1D1 Missense_Mutation p.D320H 0.14 tolerated(0.1) possibly_damaging(0.45) TCGA-BT-A42F-01 16 18810024 18810024 G A ARL6IP1 Silent p.L57L 0.08 TCGA-BT-A42F-01 16 19483504 19483504 C G TMC5 Missense_Mutation p.S626C 0.05 tolerated(0.24) possibly_damaging(0.569) TCGA-BT-A42F-01 16 28109883 28109883 C T XPO6 Silent p.L1118L 0.12 TCGA-BT-A42F-01 16 28617118 28617118 C T SULT1A1 3'UTR 0.09 TCGA-BT-A42F-01 16 65022075 65022075 C T CDH11 Silent p.V328V 0.10 TCGA-BT-A42F-01 16 70384506 70384506 A G DDX19A Missense_Mutation p.N35S 0.07 tolerated(0.16) benign(0.055) TCGA-BT-A42F-01 16 855650 855650 C G PRR25 Missense_Mutation p.H70D 0.15 deleterious_low_confidence(0) benign(0.006) TCGA-BT-A42F-01 16 855664 855664 C T PRR25 Silent p.I74I 0.14 TCGA-BT-A42F-01 17 16342432 16342432 C G TRPV2 3'Flank 0.14 TCGA-BT-A42F-01 17 33520472 33520472 G C SLC35G3 Silent p.V285V 0.08 TCGA-BT-A42F-01 17 5383380 5383380 G C DERL2 Missense_Mutation p.S203C 0.08 tolerated(0.06) possibly_damaging(0.656) TCGA-BT-A42F-01 17 57918661 57918661 G C VMP1 3'Flank 0.08 TCGA-BT-A42F-01 17 62498295 62498295 C G DDX5 Missense_Mutation p.D381H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BT-A42F-01 17 72227070 72227070 G A TTYH2 Missense_Mutation p.D116N 0.10 deleterious(0) probably_damaging(1) TCGA-BT-A42F-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.20 TCGA-BT-A42F-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.12 tolerated(0.11) benign(0.308) TCGA-BT-A42F-01 17 78321442 78321442 C T RNF213 Missense_Mutation p.L3103F 0.13 probably_damaging(0.999) TCGA-BT-A42F-01 18 24035843 24035843 C G KCTD1 Missense_Mutation p.R213T 0.19 tolerated(0.53) benign(0.017) TCGA-BT-A42F-01 18 2608738 2608738 G A NDC80 Missense_Mutation p.E533K 0.15 deleterious(0.05) benign(0.021) TCGA-BT-A42F-01 18 2697900 2697900 G A SMCHD1 Silent p.T401T 0.19 TCGA-BT-A42F-01 18 2891764 2891764 C G EMILIN2 Missense_Mutation p.Q547E 0.06 tolerated(0.07) benign(0.004) TCGA-BT-A42F-01 18 3075458 3075458 C T MYOM1 Missense_Mutation p.E1568K 0.11 deleterious(0) benign(0.103) TCGA-BT-A42F-01 18 31320193 31320193 C T ASXL3 Missense_Mutation p.S942L 0.10 benign(0.001) TCGA-BT-A42F-01 19 1057923 1057923 C G ABCA7 Missense_Mutation p.I1630M 0.12 deleterious(0) possibly_damaging(0.863) TCGA-BT-A42F-01 19 1057947 1057947 C A ABCA7 Silent p.S1638S 0.11 TCGA-BT-A42F-01 19 1058721 1058721 C T ABCA7 Nonsense_Mutation p.Q1752* 0.20 TCGA-BT-A42F-01 19 12059302 12059302 G C ZNF700 Missense_Mutation p.E155Q 0.12 tolerated(0.08) benign(0.288) TCGA-BT-A42F-01 19 12991620 12991620 C T DNASE2 Silent p.T114T 0.12 TCGA-BT-A42F-01 19 34710753 34710753 C G LSM14A Missense_Mutation p.F369L 0.13 deleterious(0) probably_damaging(0.994) TCGA-BT-A42F-01 19 36317490 36317490 C A NPHS1 Missense_Mutation p.D1218Y 0.13 deleterious(0) probably_damaging(0.94) TCGA-BT-A42F-01 19 42752525 42752525 G C ERF 3'UTR 0.25 TCGA-BT-A42F-01 19 42752654 42752654 G C ERF Missense_Mutation p.A537G 0.17 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-BT-A42F-01 19 49248904 49248904 C T IZUMO1 Silent p.E71E 0.24 TCGA-BT-A42F-01 19 51960851 51960851 C T SIGLEC8 Silent p.P199P 0.10 TCGA-BT-A42F-01 19 56545014 56545014 G C NLRP5 Missense_Mutation p.E852Q 0.09 tolerated(0.15) benign(0.111) TCGA-BT-A42F-01 19 58640215 58640215 A G ZNF329 Missense_Mutation p.V219A 0.08 tolerated(0.4) possibly_damaging(0.578) TCGA-BT-A42F-01 1 113637017 113637017 C G LRIG2 Nonsense_Mutation p.S191* 0.09 TCGA-BT-A42F-01 1 113637102 113637102 C G LRIG2 Missense_Mutation p.F219L 0.07 tolerated(0.64) benign(0.001) TCGA-BT-A42F-01 1 118477209 118477209 G C WDR3 Silent p.L95L 0.07 TCGA-BT-A42F-01 1 1222965 1222965 G A SCNN1D Missense_Mutation p.G463D 0.10 deleterious(0.03) benign(0.382) TCGA-BT-A42F-01 1 150298290 150298290 C G PRPF3 Missense_Mutation p.S76C 0.37 deleterious(0) probably_damaging(0.974) TCGA-BT-A42F-01 1 156646359 156646359 C G NES Missense_Mutation p.G233A 0.44 tolerated(0.34) possibly_damaging(0.646) TCGA-BT-A42F-01 1 180034352 180034352 G A CEP350 Missense_Mutation p.E1838K 0.34 probably_damaging(0.999) TCGA-BT-A42F-01 1 186303469 186303469 C T TPR Missense_Mutation p.E1724K 0.26 benign(0.292) TCGA-BT-A42F-01 1 207533021 207533021 C G CD55 3'UTR 0.13 TCGA-BT-A42F-01 1 210273593 210273593 G A SYT14 Silent p.Q362Q 0.29 TCGA-BT-A42F-01 1 227333352 227333352 A G CDC42BPA Silent p.H327H 0.06 TCGA-BT-A42F-01 1 240256018 240256018 C T FMN2 Silent p.I203I 0.23 TCGA-BT-A42F-01 1 240286613 240286613 C T FMN2 Nonsense_Mutation p.Q584* 0.19 TCGA-BT-A42F-01 1 25669469 25669469 G A TMEM50A Nonsense_Mutation p.W37* 0.09 TCGA-BT-A42F-01 1 32092554 32092554 C T HCRTR1 Silent p.L417L 0.06 TCGA-BT-A42F-01 1 3389977 3389977 G A ARHGEF16 Missense_Mutation p.R399Q 0.11 deleterious(0.01) possibly_damaging(0.836) TCGA-BT-A42F-01 1 3394588 3394588 G A ARHGEF16 Silent p.K541K 0.10 TCGA-BT-A42F-01 1 3395148 3395148 G A ARHGEF16 Missense_Mutation p.E596K 0.08 tolerated(0.09) probably_damaging(0.992) TCGA-BT-A42F-01 1 39765885 39765885 G T MACF1 Nonsense_Mutation p.E834* 0.05 TCGA-BT-A42F-01 1 44451007 44451007 G C B4GALT2 Silent p.L295L 0.10 TCGA-BT-A42F-01 1 55080490 55080490 G A FAM151A Missense_Mutation p.S153F 0.08 deleterious(0) possibly_damaging(0.534) TCGA-BT-A42F-01 1 62675614 62675614 G A L1TD1 Missense_Mutation p.E390K 0.11 tolerated(0.17) unknown(0) TCGA-BT-A42F-01 1 95709982 95709982 C T RWDD3 Missense_Mutation p.H101Y 0.11 tolerated(0.05) probably_damaging(1) TCGA-BT-A42F-01 1 99771795 99771795 C T LPPR4 Silent p.G507G 0.05 TCGA-BT-A42F-01 20 10393592 10393592 C T MKKS Missense_Mutation p.E191K 0.10 tolerated(0.47) benign(0.013) TCGA-BT-A42F-01 20 13107361 13107361 C G SPTLC3 Missense_Mutation p.Q426E 0.10 tolerated(1) benign(0.001) TCGA-BT-A42F-01 20 23065545 23065545 C G CD93 Missense_Mutation p.D429H 0.10 deleterious(0) probably_damaging(0.993) TCGA-BT-A42F-01 20 31948265 31948265 G T CDK5RAP1 Silent p.G525G 0.20 TCGA-BT-A42F-01 20 31973485 31973485 G C CDK5RAP1 Missense_Mutation p.L283V 0.11 tolerated(0.59) benign(0.071) TCGA-BT-A42F-01 20 34214645 34214645 C G CPNE1 Silent p.S444S 0.07 TCGA-BT-A42F-01 20 49575371 49575371 G C MOCS3 5'UTR 0.10 TCGA-BT-A42F-01 20 60504867 60504867 G A CDH4 Missense_Mutation p.V736M 0.20 deleterious(0) benign(0.044) TCGA-BT-A42F-01 20 60881187 60881187 G A ADRM1 Intron 0.16 TCGA-BT-A42F-01 21 31709415 31709415 C A KRTAP27-1 Missense_Mutation p.G191V 0.17 tolerated(0.06) benign(0.075) TCGA-BT-A42F-01 21 41457656 41457656 C T DSCAM Silent p.R1335R 0.07 TCGA-BT-A42F-01 22 30054188 30054188 G A NF2 Missense_Mutation p.E204K 0.11 deleterious(0.03) possibly_damaging(0.898) TCGA-BT-A42F-01 22 30067901 30067901 G A NF2 Silent p.Q362Q 0.29 TCGA-BT-A42F-01 22 30772643 30772643 C T CCDC157 Missense_Mutation p.P723L 0.15 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-BT-A42F-01 22 40257803 40257803 T C ENTHD1 Missense_Mutation p.K187E 0.10 tolerated(0.11) benign(0.293) TCGA-BT-A42F-01 22 41923373 41923373 C T ACO2 Missense_Mutation p.R679C 0.11 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-BT-A42F-01 2 102493584 102493584 T G MAP4K4 Missense_Mutation p.L976V 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-BT-A42F-01 2 133542704 133542704 C T NCKAP5 Silent p.Q560Q 0.13 TCGA-BT-A42F-01 2 136614389 136614389 C G MCM6 Missense_Mutation p.R512T 0.16 deleterious(0) probably_damaging(0.99) TCGA-BT-A42F-01 2 18113504 18113504 C T KCNS3 Missense_Mutation p.S410F 0.08 deleterious(0) probably_damaging(0.969) TCGA-BT-A42F-01 2 196651884 196651884 C G DNAH7 Missense_Mutation p.K3576N 0.08 deleterious(0) probably_damaging(0.991) TCGA-BT-A42F-01 2 238671857 238671857 G C LRRFIP1 Missense_Mutation p.E501Q 0.14 deleterious(0.04) possibly_damaging(0.474) TCGA-BT-A42F-01 2 24344030 24344030 C A PFN4 Intron 0.19 TCGA-BT-A42F-01 2 25469553 25469553 G A DNMT3A Silent p.P405P 0.25 TCGA-BT-A42F-01 2 32463369 32463369 C T NLRC4 Missense_Mutation p.E785K 0.08 tolerated(0.09) benign(0.004) TCGA-BT-A42F-01 2 39070261 39070261 C T DHX57 Missense_Mutation p.E771K 0.14 tolerated(0.05) probably_damaging(0.928) TCGA-BT-A42F-01 2 85924684 85924684 G A GNLY Missense_Mutation p.R104H 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-BT-A42F-01 2 98408979 98408979 C T TMEM131 Silent p.A1338A 0.25 TCGA-BT-A42F-01 3 113377080 113377080 C G KIAA2018 Missense_Mutation p.R1150T 0.07 benign(0.138) TCGA-BT-A42F-01 3 113377090 113377090 C T KIAA2018 Missense_Mutation p.E1147K 0.11 possibly_damaging(0.546) TCGA-BT-A42F-01 3 122134414 122134414 C G WDR5B 5'UTR 0.08 TCGA-BT-A42F-01 3 130452635 130452635 G T PIK3R4 Missense_Mutation p.L403I 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-BT-A42F-01 3 132349340 132349340 G T ACAD11 Missense_Mutation p.L302I 0.10 tolerated(0.22) benign(0.027) TCGA-BT-A42F-01 3 133329949 133329949 C T TOPBP1 Missense_Mutation p.D1358N 0.08 tolerated(0.27) benign(0.003) TCGA-BT-A42F-01 3 134323119 134323119 C T KY Missense_Mutation p.E430K 0.14 deleterious(0.03) possibly_damaging(0.804) TCGA-BT-A42F-01 3 139077648 139077648 C T COPB2 Missense_Mutation p.E831K 0.08 tolerated(0.79) benign(0.003) TCGA-BT-A42F-01 3 181430283 181430283 G C SOX2 Missense_Mutation p.M45I 0.12 deleterious(0) probably_damaging(0.999) TCGA-BT-A42F-01 3 44408981 44408981 G C TCAIM Missense_Mutation p.R118T 0.06 deleterious(0.01) benign(0.372) TCGA-BT-A42F-01 3 45038611 45038611 G C EXOSC7 Missense_Mutation p.R96T 0.07 deleterious(0.03) possibly_damaging(0.468) TCGA-BT-A42F-01 3 51737851 51737851 A G TEX264 Missense_Mutation p.D254G 0.06 deleterious(0.05) probably_damaging(0.941) TCGA-BT-A42F-01 3 55922481 55922481 C T ERC2 Missense_Mutation p.E834K 0.06 deleterious(0) possibly_damaging(0.845) TCGA-BT-A42F-01 3 58520095 58520095 G A ACOX2 Silent p.Y105Y 0.05 TCGA-BT-A42F-01 3 9712777 9712777 C G MTMR14 Missense_Mutation p.I200M 0.12 deleterious(0) probably_damaging(0.964) TCGA-BT-A42F-01 4 10446457 10446457 C A ZNF518B Missense_Mutation p.G499V 0.07 tolerated(0.08) possibly_damaging(0.893) TCGA-BT-A42F-01 4 169927999 169927999 G A CBR4 Nonsense_Mutation p.Q103* 0.06 TCGA-BT-A42F-01 4 175565075 175565075 C T GLRA3 Silent p.K419K 0.06 TCGA-BT-A42F-01 4 175565081 175565081 C T GLRA3 Missense_Mutation p.M417I 0.05 tolerated(0.43) benign(0.003) TCGA-BT-A42F-01 4 38117489 38117489 G A TBC1D1 Missense_Mutation p.E906K 0.10 deleterious(0) probably_damaging(0.985) TCGA-BT-A42F-01 4 47938583 47938583 C T CNGA1 Missense_Mutation p.R712Q 0.22 tolerated(0.06) benign(0.128) TCGA-BT-A42F-01 4 88106495 88106495 C T KLHL8 Missense_Mutation p.E225K 0.12 tolerated(0.47) benign(0.056) TCGA-BT-A42F-01 4 88106843 88106843 C G KLHL8 Missense_Mutation p.E109Q 0.11 tolerated(0.32) possibly_damaging(0.502) TCGA-BT-A42F-01 5 118440893 118440893 C G DMXL1 Missense_Mutation p.Q102E 0.09 deleterious(0.04) probably_damaging(0.993) TCGA-BT-A42F-01 5 133745674 133745674 C T CDKN2AIPNL Missense_Mutation p.D87N 0.09 deleterious(0.03) possibly_damaging(0.502) TCGA-BT-A42F-01 5 138994349 138994349 A G UBE2D2 Missense_Mutation p.K63R 0.20 tolerated_low_confidence(0.05) benign(0.103) TCGA-BT-A42F-01 5 140216151 140216151 C T PCDHA7 Missense_Mutation p.S728F 0.08 deleterious_low_confidence(0.02) benign(0.28) TCGA-BT-A42F-01 5 140563715 140563715 C A PCDHB16 Missense_Mutation p.F527L 0.15 deleterious_low_confidence(0.03) benign(0.196) TCGA-BT-A42F-01 5 147862774 147862774 C T HTR4 Missense_Mutation p.D427N 0.09 deleterious_low_confidence(0) benign(0.008) TCGA-BT-A42F-01 5 151783950 151783950 C G NMUR2 Missense_Mutation p.R242T 0.11 deleterious(0.03) benign(0.345) TCGA-BT-A42F-01 5 16763803 16763803 T C MYO10 Missense_Mutation p.N463S 0.12 tolerated(0.07) probably_damaging(0.992) TCGA-BT-A42F-01 5 34004718 34004718 G A AMACR Silent p.R171R 0.08 TCGA-BT-A42F-01 5 36182019 36182019 G C SKP2 Missense_Mutation p.Q387H 0.07 deleterious(0.02) benign(0.377) TCGA-BT-A42F-01 5 37185051 37185051 C G C5orf42 Missense_Mutation p.E1440D 0.13 tolerated(0.21) benign(0.027) TCGA-BT-A42F-01 5 39134329 39134329 C G FYB Missense_Mutation p.E610Q 0.10 deleterious(0) possibly_damaging(0.675) TCGA-BT-A42F-01 5 5190225 5190225 G T ADAMTS16 Nonsense_Mutation p.E397* 0.12 TCGA-BT-A42F-01 5 64314092 64314092 A G CWC27 Missense_Mutation p.K455E 0.15 tolerated(0.09) probably_damaging(0.958) TCGA-BT-A42F-01 5 677903 677903 C G TPPP Silent p.V91V 0.06 TCGA-BT-A42F-01 5 76717763 76717763 G A PDE8B Missense_Mutation p.D790N 0.09 tolerated(0.1) benign(0.008) TCGA-BT-A42F-01 5 90050835 90050835 G C GPR98 Missense_Mutation p.D3805H 0.11 probably_damaging(0.99) TCGA-BT-A42F-01 6 116439036 116439036 C G NT5DC1 Missense_Mutation p.Q153E 0.10 tolerated(0.43) benign(0.005) TCGA-BT-A42F-01 6 131481255 131481255 A G AKAP7 Missense_Mutation p.S70G 0.11 tolerated(0.15) benign(0.122) TCGA-BT-A42F-01 6 150158565 150158565 G A LRP11 Silent p.F316F 0.10 TCGA-BT-A42F-01 6 26124027 26124027 C A HIST1H2BC Nonsense_Mutation p.E36* 0.11 TCGA-BT-A42F-01 6 26252083 26252083 G C HIST1H2BH Missense_Mutation p.D69H 0.12 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-BT-A42F-01 6 31689503 31689503 G C LY6G6C 5'UTR 0.17 TCGA-BT-A42F-01 6 33382114 33382114 G C PHF1 Missense_Mutation p.E283Q 0.13 deleterious(0.04) benign(0.168) TCGA-BT-A42F-01 6 35773690 35773690 C T LHFPL5 Silent p.G81G 0.06 TCGA-BT-A42F-01 6 44227806 44227806 C T NFKBIE Missense_Mutation p.E471K 0.19 deleterious(0) probably_damaging(0.926) TCGA-BT-A42F-01 6 57012272 57012272 G C ZNF451 Missense_Mutation p.Q463H 0.16 tolerated(0.08) possibly_damaging(0.728) TCGA-BT-A42F-01 6 7580988 7580988 C A DSP Missense_Mutation p.T1522K 0.12 benign(0.081) TCGA-BT-A42F-01 7 100678223 100678223 G A MUC17 Missense_Mutation p.E1176K 0.09 unknown(0) TCGA-BT-A42F-01 7 106508725 106508725 C A PIK3CG Missense_Mutation p.T240N 0.15 deleterious(0.04) possibly_damaging(0.876) TCGA-BT-A42F-01 7 117407114 117407114 C G CTTNBP2 Silent p.L965L 0.08 TCGA-BT-A42F-01 7 120935629 120935629 C T CPED1 Missense_Mutation p.H1002Y 0.07 deleterious(0) possibly_damaging(0.808) TCGA-BT-A42F-01 7 135255986 135255986 C T NUP205 Silent p.F54F 0.07 TCGA-BT-A42F-01 7 138758620 138758620 C T ZC3HAV1 Nonsense_Mutation p.W618* 0.09 TCGA-BT-A42F-01 7 141490476 141490476 G A TAS2R5 Silent p.K105K 0.11 TCGA-BT-A42F-01 7 142161947 142161947 A T TRBV6-6 Missense_Mutation p.C110S 0.06 deleterious(0.01) probably_damaging(0.924) TCGA-BT-A42F-01 7 143095483 143095483 C T EPHA1 Silent p.L465L 0.12 TCGA-BT-A42F-01 7 150939878 150939878 C G SMARCD3 Missense_Mutation p.E129Q 0.09 deleterious(0) probably_damaging(1) TCGA-BT-A42F-01 7 21892202 21892202 G C DNAH11 Missense_Mutation p.E3679Q 0.10 probably_damaging(0.98) TCGA-BT-A42F-01 7 22194078 22194078 G A RAPGEF5 Missense_Mutation p.S441F 0.12 deleterious(0.01) possibly_damaging(0.595) TCGA-BT-A42F-01 7 51096213 51096213 C T COBL Silent p.Q860Q 0.07 TCGA-BT-A42F-01 7 6731775 6731775 C A ZNF12 Missense_Mutation p.M266I 0.08 tolerated(0.15) benign(0.038) TCGA-BT-A42F-01 7 98588099 98588099 G C TRRAP Missense_Mutation p.D3209H 0.07 probably_damaging(0.987) TCGA-BT-A42F-01 8 101270704 101270704 G A RNF19A 3'UTR 0.13 TCGA-BT-A42F-01 8 105436520 105436520 A G DPYS Missense_Mutation p.V397A 0.08 tolerated(0.08) benign(0.128) TCGA-BT-A42F-01 8 11415490 11415490 G A BLK Silent p.L324L 0.12 TCGA-BT-A42F-01 8 146157491 146157491 G A ZNF16 Nonsense_Mutation p.Q228* 0.23 TCGA-BT-A42F-01 8 195731 195731 G A ZNF596 Missense_Mutation p.R295K 0.09 tolerated(0.76) benign(0.01) TCGA-BT-A42F-01 8 54866655 54866655 G C RGS20 Missense_Mutation p.E255Q 0.13 deleterious(0) possibly_damaging(0.477) TCGA-BT-A42F-01 8 68208682 68208682 C T ARFGEF1 Missense_Mutation p.R208H 0.07 deleterious(0) probably_damaging(0.996) TCGA-BT-A42F-01 8 87540815 87540815 C T CPNE3 Silent p.S14S 0.08 TCGA-BT-A42F-01 9 123629233 123629233 G A PHF19 Missense_Mutation p.R209W 0.12 deleterious(0) possibly_damaging(0.898) TCGA-BT-A42F-01 9 125563224 125563224 G A OR1K1 Missense_Mutation p.A275T 0.15 deleterious(0.02) possibly_damaging(0.895) TCGA-BT-A42F-01 9 131386709 131386709 G A SPTAN1 Missense_Mutation p.E1979K 0.22 deleterious(0) possibly_damaging(0.559) TCGA-BT-A42F-01 9 135275528 135275528 C T TTF1 Silent p.V495V 0.18 TCGA-BT-A42F-01 9 139701589 139701589 C G CCDC183 Intron 0.20 TCGA-BT-A42F-01 9 140100686 140100686 G A NDOR1 Silent p.V46V 0.10 TCGA-BT-A42F-01 9 34976621 34976621 G A KIAA1045 Missense_Mutation p.E245K 0.15 deleterious(0.02) possibly_damaging(0.907) TCGA-BT-A42F-01 9 35059068 35059068 G A VCP Missense_Mutation p.S718L 0.10 tolerated(0.2) benign(0.033) TCGA-BT-A42F-01 9 36204091 36204091 G C CLTA Missense_Mutation p.E134Q 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-BT-A42F-01 9 86495304 86495304 G A KIF27 Nonsense_Mutation p.Q851* 0.10 TCGA-BT-A42F-01 X 154221214 154221216 CTC TT F8 Frame_Shift_Del p.R199Kfs*37 0.14 TCGA-BT-A42F-01 X 27766626 27766626 G A DCAF8L2 Silent p.K538K 0.27 TCGA-BT-A42F-01 X 74290270 74290270 C G ABCB7 Missense_Mutation p.R433T 0.19 deleterious(0) probably_damaging(1) TCGA-BT-A42F-01 X 79984387 79984387 C A BRWD3 Missense_Mutation p.G417V 0.16 tolerated(0.4) benign(0.007) TCGA-C4-A0EZ-01 10 106918677 106918677 C G SORCS3 Missense_Mutation p.Q553E 0.57 tolerated(0.16) benign(0.023) TCGA-C4-A0EZ-01 10 115609945 115609945 C A DCLRE1A Nonsense_Mutation p.E307* 0.36 TCGA-C4-A0EZ-01 10 27389293 27389293 C G ANKRD26 5'UTR 0.21 TCGA-C4-A0EZ-01 10 38121959 38121959 G A ZNF248 Silent p.N108N 0.22 TCGA-C4-A0EZ-01 10 5827911 5827911 T C GDI2 Missense_Mutation p.K164R 0.40 tolerated(0.41) benign(0.003) TCGA-C4-A0EZ-01 10 94109544 94109544 G A MARCH5 Missense_Mutation p.G224S 0.30 deleterious(0) probably_damaging(0.987) TCGA-C4-A0EZ-01 10 95157003 95157003 C T MYOF Splice_Site p.X445_splice 0.18 TCGA-C4-A0EZ-01 11 10536558 10536558 C T RNF141 Missense_Mutation p.E200K 0.43 deleterious(0.02) benign(0.062) TCGA-C4-A0EZ-01 11 105797580 105797580 C T GRIA4 Missense_Mutation p.P654L 0.37 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 11 105842684 105842684 G A GRIA4 Missense_Mutation p.V780I 0.34 tolerated(0.54) benign(0.016) TCGA-C4-A0EZ-01 11 118940031 118940031 G C VPS11 Missense_Mutation p.D104H 0.27 deleterious(0) probably_damaging(0.983) TCGA-C4-A0EZ-01 11 123900682 123900682 C T OR10G8 Missense_Mutation p.S118F 0.33 deleterious(0) possibly_damaging(0.797) TCGA-C4-A0EZ-01 11 1269778 1269778 T C MUC5B Missense_Mutation p.W3890R 0.45 unknown(0) TCGA-C4-A0EZ-01 11 128857989 128857989 G A ARHGAP32 Silent p.F395F 0.31 TCGA-C4-A0EZ-01 11 299346 299346 G C IFITM5 Missense_Mutation p.L49V 0.47 tolerated(0.08) possibly_damaging(0.527) TCGA-C4-A0EZ-01 11 34182492 34182492 G A ABTB2 Silent p.T785T 0.50 TCGA-C4-A0EZ-01 11 4626603 4626603 C T TRIM68 Nonsense_Mutation p.W44* 0.34 TCGA-C4-A0EZ-01 11 49176040 49176040 G A FOLH1 Missense_Mutation p.T543I 0.19 tolerated(0.07) benign(0.005) TCGA-C4-A0EZ-01 11 4936818 4936818 C G OR51G2 Missense_Mutation p.E26Q 0.20 deleterious(0.01) possibly_damaging(0.864) TCGA-C4-A0EZ-01 11 5443929 5443929 C T OR51Q1 Nonsense_Mutation p.R167* 0.22 TCGA-C4-A0EZ-01 11 61026731 61026731 C T VWCE Missense_Mutation p.A762T 0.44 tolerated_low_confidence(0.37) benign(0.036) TCGA-C4-A0EZ-01 11 62475847 62475847 C G GNG3 Missense_Mutation p.A27G 0.43 deleterious(0) possibly_damaging(0.871) TCGA-C4-A0EZ-01 11 63449017 63449017 G C RTN3 5'UTR 0.35 TCGA-C4-A0EZ-01 11 65618824 65618824 C G SNX32 Missense_Mutation p.I245M 0.11 deleterious(0.01) benign(0.241) TCGA-C4-A0EZ-01 11 6661249 6661249 C A DCHS1 Silent p.T532T 0.59 TCGA-C4-A0EZ-01 11 67559821 67559821 G C FAM86C2P RNA 0.28 TCGA-C4-A0EZ-01 11 84027997 84027997 G A DLG2 Intron 0.27 TCGA-C4-A0EZ-01 11 88780634 88780634 G T GRM5 Missense_Mutation p.S136Y 0.35 deleterious(0.03) benign(0.42) TCGA-C4-A0EZ-01 12 100042274 100042274 G C FAM71C Missense_Mutation p.E108Q 0.28 tolerated(0.19) benign(0.002) TCGA-C4-A0EZ-01 12 104698237 104698237 C T EID3 Silent p.F175F 0.24 TCGA-C4-A0EZ-01 12 117610323 117610323 G C FBXO21 Silent p.V322V 0.59 TCGA-C4-A0EZ-01 12 132490706 132490706 C G EP400 Silent p.L995L 0.42 TCGA-C4-A0EZ-01 12 55820919 55820919 G A OR6C76 Silent p.V294V 0.31 TCGA-C4-A0EZ-01 12 56355231 56355231 G A PMEL Silent p.L68L 0.31 TCGA-C4-A0EZ-01 12 56629078 56629078 T C SLC39A5 Missense_Mutation p.C258R 0.59 deleterious(0) probably_damaging(0.999) TCGA-C4-A0EZ-01 12 57603647 57603647 C T LRP1 Silent p.P4145P 0.21 TCGA-C4-A0EZ-01 12 57662771 57662771 C G R3HDM2 Missense_Mutation p.Q589H 0.59 deleterious(0) probably_damaging(0.986) TCGA-C4-A0EZ-01 12 9259153 9259153 G A A2M Nonsense_Mutation p.Q310* 0.19 TCGA-C4-A0EZ-01 13 113750868 113750868 G A MCF2L Missense_Mutation p.V1065I 0.27 deleterious(0.02) benign(0.048) TCGA-C4-A0EZ-01 13 26927985 26927985 C A CDK8 Missense_Mutation p.L142M 0.68 deleterious(0.01) probably_damaging(0.966) TCGA-C4-A0EZ-01 14 23457182 23457182 C T C14orf93 Missense_Mutation p.R376H 0.48 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-C4-A0EZ-01 14 23884440 23884440 T C MYH7 Missense_Mutation p.T1775A 0.06 tolerated(0.06) probably_damaging(0.979) TCGA-C4-A0EZ-01 14 24792260 24792260 G T ADCY4 Missense_Mutation p.S731Y 0.26 deleterious(0) benign(0.379) TCGA-C4-A0EZ-01 14 29236560 29236560 C T FOXG1 Silent p.P25P 0.19 TCGA-C4-A0EZ-01 14 38064224 38064224 G A FOXA1 5'UTR 0.50 TCGA-C4-A0EZ-01 14 42361125 42361125 C T LRFN5 Silent p.V686V 0.15 TCGA-C4-A0EZ-01 14 58031040 58031040 G A SLC35F4 Missense_Mutation p.T460I 0.52 tolerated(0.47) probably_damaging(0.999) TCGA-C4-A0EZ-01 14 77948949 77948949 G A ISM2 Missense_Mutation p.P230L 0.44 deleterious(0.01) possibly_damaging(0.908) TCGA-C4-A0EZ-01 14 80327906 80327906 G C NRXN3 Intron 0.17 TCGA-C4-A0EZ-01 14 94155067 94155067 C G UNC79 Silent p.L2184L 0.58 TCGA-C4-A0EZ-01 15 23811572 23811572 C T MKRN3 Missense_Mutation p.R215C 0.50 deleterious(0) benign(0.042) TCGA-C4-A0EZ-01 15 31851205 31851205 C G OTUD7A Missense_Mutation p.E173Q 0.50 deleterious(0) probably_damaging(0.996) TCGA-C4-A0EZ-01 15 43724559 43724559 C T TP53BP1 Missense_Mutation p.E1170K 0.41 tolerated(0.14) benign(0.053) TCGA-C4-A0EZ-01 15 49882012 49882012 A G FAM227B Missense_Mutation p.S100P 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-C4-A0EZ-01 15 50550637 50550637 C A HDC Missense_Mutation p.M94I 0.32 tolerated(0.17) probably_damaging(0.999) TCGA-C4-A0EZ-01 15 51790751 51790751 G A DMXL2 Missense_Mutation p.S1557L 0.36 tolerated(0.26) possibly_damaging(0.476) TCGA-C4-A0EZ-01 16 15219550 15219550 C T RP11-1186N24.5 Intron 0.19 TCGA-C4-A0EZ-01 16 2012182 2012182 G A RPS2 Nonsense_Mutation p.Q267* 0.21 TCGA-C4-A0EZ-01 16 24990327 24990327 C T ARHGAP17 Splice_Site p.X18_splice 0.41 TCGA-C4-A0EZ-01 16 3613170 3613170 C T NLRC3 Missense_Mutation p.G637R 0.36 deleterious(0.02) benign(0.301) TCGA-C4-A0EZ-01 16 57250884 57250884 A G RSPRY1 Missense_Mutation p.N280D 0.19 tolerated(1) benign(0) TCGA-C4-A0EZ-01 16 84118642 84118642 G C MBTPS1 Nonsense_Mutation p.S411* 0.25 TCGA-C4-A0EZ-01 16 84793807 84793807 C T USP10 Missense_Mutation p.R494C 0.17 tolerated(0.06) probably_damaging(0.988) TCGA-C4-A0EZ-01 16 86545073 86545073 C A FOXF1 Missense_Mutation p.L300M 0.65 deleterious(0) probably_damaging(0.943) TCGA-C4-A0EZ-01 16 89924757 89924757 C G SPIRE2 Missense_Mutation p.L372V 0.20 tolerated(0.09) probably_damaging(0.919) TCGA-C4-A0EZ-01 17 10600714 10600714 C G SCO1 Silent p.A37A 0.91 TCGA-C4-A0EZ-01 17 26098034 26098034 T C NOS2 Missense_Mutation p.M572V 0.70 deleterious(0.03) probably_damaging(0.997) TCGA-C4-A0EZ-01 17 27233884 27233884 C T PHF12 Silent p.Q890Q 0.69 TCGA-C4-A0EZ-01 17 29311659 29311659 G A RNF135 Missense_Mutation p.E133K 0.24 tolerated(0.06) benign(0.03) TCGA-C4-A0EZ-01 17 33768854 33768854 C T SLFN13 Silent p.L550L 0.21 TCGA-C4-A0EZ-01 17 36482906 36482906 G A GPR179 Silent p.V2182V 0.22 TCGA-C4-A0EZ-01 17 37457256 37457256 C G FBXL20 Missense_Mutation p.E78Q 0.23 tolerated(0.16) benign(0.082) TCGA-C4-A0EZ-01 17 37650822 37650822 A G CDK12 Missense_Mutation p.E765G 0.17 probably_damaging(0.998) TCGA-C4-A0EZ-01 17 56395743 56395743 G A BZRAP1 Silent p.L590L 0.27 TCGA-C4-A0EZ-01 17 65907526 65907526 G A BPTF Missense_Mutation p.E1176K 0.74 benign(0.025) TCGA-C4-A0EZ-01 17 71391324 71391324 G A SDK2 Nonsense_Mutation p.Q1188* 0.60 TCGA-C4-A0EZ-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 1.00 deleterious(0) probably_damaging(0.994) TCGA-C4-A0EZ-01 17 76136924 76136924 G A TMC8 Missense_Mutation p.E638K 0.65 deleterious(0.01) possibly_damaging(0.606) TCGA-C4-A0EZ-01 17 76457697 76457697 C T DNAH17 Missense_Mutation p.E3076K 0.26 possibly_damaging(0.599) TCGA-C4-A0EZ-01 17 78831777 78831777 A T RPTOR Intron 0.77 TCGA-C4-A0EZ-01 17 79910997 79910997 T C NOTUM Missense_Mutation p.H444R 0.52 tolerated(0.05) benign(0.197) TCGA-C4-A0EZ-01 17 79973232 79973232 G A ASPSCR1 Silent p.R545R 0.31 TCGA-C4-A0EZ-01 17 79993797 79993797 G T DCXR 3'UTR 0.21 TCGA-C4-A0EZ-01 18 10471657 10471657 C T APCDD1 Missense_Mutation p.R125W 0.18 deleterious(0.02) probably_damaging(0.929) TCGA-C4-A0EZ-01 18 13621234 13621234 G A LDLRAD4 Silent p.P100P 0.23 TCGA-C4-A0EZ-01 18 28956922 28956922 G A DSG4 Missense_Mutation p.M16I 0.15 tolerated(0.2) benign(0.013) TCGA-C4-A0EZ-01 18 9254812 9254812 G A ANKRD12 Missense_Mutation p.R516K 0.34 tolerated_low_confidence(0.08) benign(0.029) TCGA-C4-A0EZ-01 19 16222537 16222537 C T RAB8A 5'UTR 0.71 TCGA-C4-A0EZ-01 19 1807231 1807231 G A ATP8B3 Missense_Mutation p.S184L 0.37 deleterious(0) benign(0.107) TCGA-C4-A0EZ-01 19 35828735 35828735 G A CD22 Missense_Mutation p.E266K 0.34 tolerated(0.83) benign(0.004) TCGA-C4-A0EZ-01 19 42132050 42132050 C A CEACAM4 Missense_Mutation p.A117S 0.28 tolerated(0.15) benign(0.089) TCGA-C4-A0EZ-01 19 44611292 44611292 C T ZNF224 Nonsense_Mutation p.Q327* 0.20 TCGA-C4-A0EZ-01 19 45579562 45579562 C T ZNF296 Missense_Mutation p.E24K 0.25 deleterious_low_confidence(0.01) benign(0.185) TCGA-C4-A0EZ-01 19 51136047 51136047 G A SYT3 Missense_Mutation p.S57L 0.27 tolerated(0.06) probably_damaging(0.991) TCGA-C4-A0EZ-01 19 56466880 56466880 G A NLRP8 Missense_Mutation p.A486T 0.04 tolerated(1) benign(0.007) TCGA-C4-A0EZ-01 19 57641980 57641980 C T USP29 Missense_Mutation p.P646L 0.45 tolerated(1) benign(0.006) TCGA-C4-A0EZ-01 19 58004247 58004247 G A ZNF419 Missense_Mutation p.E109K 0.51 tolerated(0.35) benign(0.001) TCGA-C4-A0EZ-01 19 58574893 58574893 C T ZNF135 Silent p.P92P 0.44 TCGA-C4-A0EZ-01 19 59082675 59082675 C G MZF1 Missense_Mutation p.E28Q 0.40 tolerated(0.1) benign(0.005) TCGA-C4-A0EZ-01 19 8131009 8131009 C T FBN3 Missense_Mutation p.V2742I 0.34 tolerated(0.26) benign(0.018) TCGA-C4-A0EZ-01 19 9025599 9025599 G A MUC16 Silent p.T12285T 0.21 TCGA-C4-A0EZ-01 1 117559730 117559730 C T CD101 Missense_Mutation p.S416F 0.22 tolerated(0.05) benign(0.03) TCGA-C4-A0EZ-01 1 1190692 1190692 C T UBE2J2 Missense_Mutation p.R240Q 0.22 tolerated(0.34) benign(0.007) TCGA-C4-A0EZ-01 1 1455591 1455591 G A ATAD3A Silent p.A243A 0.41 TCGA-C4-A0EZ-01 1 152325595 152325595 G C FLG2 Missense_Mutation p.S1556C 0.18 benign(0.253) TCGA-C4-A0EZ-01 1 153958590 153958590 G A RAB13 Silent p.I41I 0.14 TCGA-C4-A0EZ-01 1 158263419 158263419 A G CD1C 3'UTR 0.38 TCGA-C4-A0EZ-01 1 158636180 158636180 C T SPTA1 Missense_Mutation p.G716R 0.53 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 1 161140556 161140556 C T PPOX Silent p.H415H 0.45 TCGA-C4-A0EZ-01 1 16256134 16256134 T C SPEN Silent p.Y1133Y 0.27 TCGA-C4-A0EZ-01 1 17085065 17085065 C A MST1L RNA 0.07 TCGA-C4-A0EZ-01 1 180794388 180794388 C T XPR1 Missense_Mutation p.P348S 0.55 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 1 181767565 181767565 G A CACNA1E Silent p.A2179A 0.58 TCGA-C4-A0EZ-01 1 190250704 190250704 G T BRINP3 Missense_Mutation p.S138Y 0.17 deleterious(0) possibly_damaging(0.771) TCGA-C4-A0EZ-01 1 196654203 196654203 G A CFH Missense_Mutation p.C267Y 0.50 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 1 202705488 202705488 G C KDM5B Silent p.L1039L 0.18 TCGA-C4-A0EZ-01 1 205492699 205492699 C T CDK18 Silent p.L73L 0.18 TCGA-C4-A0EZ-01 1 21031304 21031304 C T KIF17 Silent p.T253T 0.18 TCGA-C4-A0EZ-01 1 231004093 231004093 G T C1orf198 Missense_Mutation p.P56T 0.37 deleterious(0) probably_damaging(0.999) TCGA-C4-A0EZ-01 1 235377119 235377119 G A ARID4B Silent p.V602V 0.15 TCGA-C4-A0EZ-01 1 23637376 23637376 G A HNRNPR Silent p.Y494Y 0.57 TCGA-C4-A0EZ-01 1 2541243 2541243 G A MMEL1 Missense_Mutation p.P107L 0.20 tolerated(0.1) benign(0.057) TCGA-C4-A0EZ-01 1 39878175 39878175 G A KIAA0754 Silent p.Q610Q 0.54 TCGA-C4-A0EZ-01 1 40775613 40775613 G C COL9A2 Missense_Mutation p.D281E 0.20 tolerated(0.39) possibly_damaging(0.571) TCGA-C4-A0EZ-01 1 53546444 53546444 G T PODN Silent p.G567G 0.78 TCGA-C4-A0EZ-01 1 6206806 6206806 C T CHD5 Silent p.L503L 0.22 TCGA-C4-A0EZ-01 1 86123573 86123573 C T ZNHIT6 Silent p.V443V 0.22 TCGA-C4-A0EZ-01 1 90178326 90178326 C G LRRC8C Missense_Mutation p.S66C 0.25 tolerated(0.15) benign(0.123) TCGA-C4-A0EZ-01 20 23856727 23856727 G A CST5 3'UTR 0.48 TCGA-C4-A0EZ-01 20 334124 334124 G A NRSN2 Missense_Mutation p.E154K 0.28 tolerated(0.19) benign(0.328) TCGA-C4-A0EZ-01 20 33582027 33582027 C G MYH7B Missense_Mutation p.F883L 0.22 possibly_damaging(0.704) TCGA-C4-A0EZ-01 20 33874706 33874706 G A FAM83C Missense_Mutation p.R626W 0.50 tolerated_low_confidence(0.12) benign(0.01) TCGA-C4-A0EZ-01 20 39798838 39798838 G A PLCG1 Missense_Mutation p.A913T 0.18 tolerated(0.56) benign(0.226) TCGA-C4-A0EZ-01 20 44521121 44521121 G C CTSA Missense_Mutation p.E166Q 0.51 tolerated(0.57) benign(0.004) TCGA-C4-A0EZ-01 20 47242457 47242457 C T PREX1 Missense_Mutation p.R1649H 0.19 deleterious(0) possibly_damaging(0.507) TCGA-C4-A0EZ-01 20 62195200 62195200 C T HELZ2 Missense_Mutation p.G1659S 0.37 tolerated(0.12) benign(0.082) TCGA-C4-A0EZ-01 21 15870854 15870854 T C SAMSN1 Missense_Mutation p.I344M 0.27 deleterious(0) possibly_damaging(0.807) TCGA-C4-A0EZ-01 22 19868214 19868214 C A TXNRD2 Silent p.A371A 0.35 TCGA-C4-A0EZ-01 22 31011460 31011460 G A TCN2 Silent p.Q251Q 0.64 TCGA-C4-A0EZ-01 22 36889753 36889753 C A FOXRED2 Silent p.P574P 0.29 TCGA-C4-A0EZ-01 22 36889754 36889754 G A FOXRED2 Missense_Mutation p.P574L 0.28 deleterious(0.02) benign(0.158) TCGA-C4-A0EZ-01 22 36889755 36889755 G A FOXRED2 Missense_Mutation p.P574S 0.30 deleterious(0.01) benign(0.15) TCGA-C4-A0EZ-01 2 131904340 131904340 C T PLEKHB2 Silent p.V229V 0.37 TCGA-C4-A0EZ-01 2 164466194 164466201 AATGGCTG - FIGN Frame_Shift_Del p.S714Yfs*14 0.96 TCGA-C4-A0EZ-01 2 167263124 167263124 G C SCN7A Missense_Mutation p.L1339V 0.95 deleterious(0.02) benign(0.301) TCGA-C4-A0EZ-01 2 185802171 185802171 C T ZNF804A Missense_Mutation p.T683I 0.97 tolerated(0.08) benign(0.034) TCGA-C4-A0EZ-01 2 187455218 187455218 C T ITGAV Silent p.F51F 0.42 TCGA-C4-A0EZ-01 2 189950444 189950444 C T COL5A2 Splice_Site p.X248_splice 0.51 TCGA-C4-A0EZ-01 2 197080609 197080609 C A HECW2 Silent p.G1529G 0.31 TCGA-C4-A0EZ-01 2 198949278 198949278 C T PLCL1 Missense_Mutation p.T346I 0.94 tolerated(0.16) benign(0.356) TCGA-C4-A0EZ-01 2 220344839 220344839 C T SPEG Silent p.P1773P 0.44 TCGA-C4-A0EZ-01 2 241420353 241420353 C T ANKMY1 Splice_Site p.X927_splice 0.43 TCGA-C4-A0EZ-01 2 33614357 33614357 C T LTBP1 Silent p.P1606P 0.26 TCGA-C4-A0EZ-01 2 74481774 74481774 C T SLC4A5 Missense_Mutation p.R362H 0.19 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 2 90121946 90121946 T C IGKV1D-17 Missense_Mutation p.L55S 0.99 deleterious(0) possibly_damaging(0.823) TCGA-C4-A0EZ-01 3 109031405 109031405 C T DPPA2 Silent p.K56K 0.28 TCGA-C4-A0EZ-01 3 113374183 113374183 G C KIAA2018 Missense_Mutation p.P2116A 0.26 probably_damaging(0.998) TCGA-C4-A0EZ-01 3 122277249 122277249 C T PARP9 Silent p.Q27Q 0.28 TCGA-C4-A0EZ-01 3 132407701 132407701 C T NPHP3 Missense_Mutation p.R973Q 0.31 tolerated(0.1) probably_damaging(1) TCGA-C4-A0EZ-01 3 142183957 142183957 G C ATR Missense_Mutation p.F2341L 0.64 deleterious(0) probably_damaging(0.999) TCGA-C4-A0EZ-01 3 173322753 173322753 T C NLGN1 Missense_Mutation p.I122T 0.64 tolerated(0.57) benign(0.013) TCGA-C4-A0EZ-01 3 27161293 27161293 G A NEK10 Missense_Mutation p.R1107C 0.35 deleterious(0.03) benign(0.311) TCGA-C4-A0EZ-01 3 47619021 47619042 AGAAGCTGGGCTCAGCTTGTCG CC CSPG5 Frame_Shift_Del p.D159Gfs*44 0.68 TCGA-C4-A0EZ-01 3 47619042 47619042 G C CSPG5 Silent p.G158G 0.48 TCGA-C4-A0EZ-01 3 55052286 55052286 G A CACNA2D3 Missense_Mutation p.V977I 0.31 tolerated(0.22) benign(0.016) TCGA-C4-A0EZ-01 3 93605209 93605209 G A PROS1 Missense_Mutation p.R432W 0.60 tolerated(0.11) probably_damaging(0.954) TCGA-C4-A0EZ-01 3 9768403 9768403 G C CPNE9 Missense_Mutation p.E467Q 0.30 tolerated(0.11) benign(0.146) TCGA-C4-A0EZ-01 3 97806804 97806804 G A OR5AC2 Missense_Mutation p.R263H 0.20 tolerated(0.3) benign(0.051) TCGA-C4-A0EZ-01 4 123171629 123171629 C T KIAA1109 Silent p.T1941T 0.37 TCGA-C4-A0EZ-01 4 124235238 124235238 G T SPATA5 3'UTR 0.65 TCGA-C4-A0EZ-01 4 126336818 126336818 C T FAT4 Nonsense_Mutation p.R2234* 0.35 TCGA-C4-A0EZ-01 4 128996104 128996104 G C LARP1B 5'UTR 0.25 TCGA-C4-A0EZ-01 4 183721343 183721343 G A TENM3 Missense_Mutation p.A2647T 0.85 tolerated(0.64) possibly_damaging(0.821) TCGA-C4-A0EZ-01 4 38051323 38051323 G A TBC1D1 Missense_Mutation p.D572N 0.32 tolerated(0.19) benign(0.223) TCGA-C4-A0EZ-01 4 5966859 5966859 G A C4orf50 Silent p.L631L 0.31 TCGA-C4-A0EZ-01 4 66467438 66467438 G A EPHA5 Silent p.S277S 0.24 TCGA-C4-A0EZ-01 4 84406257 84406257 G A FAM175A 5'UTR 0.24 TCGA-C4-A0EZ-01 5 1221323 1221323 C T SLC6A19 Silent p.V532V 0.24 TCGA-C4-A0EZ-01 5 124080631 124080631 C T ZNF608 Missense_Mutation p.D18N 0.31 deleterious(0) probably_damaging(0.997) TCGA-C4-A0EZ-01 5 13737394 13737394 G A DNAH5 Nonsense_Mutation p.Q3808* 0.22 TCGA-C4-A0EZ-01 5 13776655 13776655 G A DNAH5 Missense_Mutation p.S3089L 0.26 possibly_damaging(0.651) TCGA-C4-A0EZ-01 5 13913952 13913952 C T DNAH5 Missense_Mutation p.R479H 0.51 possibly_damaging(0.812) TCGA-C4-A0EZ-01 5 140307955 140307955 C T PCDHAC1 Missense_Mutation p.S493L 0.66 tolerated(0.07) benign(0.016) TCGA-C4-A0EZ-01 5 15936774 15936774 C T FBXL7 Silent p.L319L 0.49 TCGA-C4-A0EZ-01 5 161119111 161119111 C T GABRA6 Nonsense_Mutation p.Q331* 0.57 TCGA-C4-A0EZ-01 5 169694131 169694131 C A LCP2 Intron 0.41 TCGA-C4-A0EZ-01 5 169694132 169694132 G A LCP2 Intron 0.42 TCGA-C4-A0EZ-01 5 169694182 169694182 T A LCP2 Intron 0.28 TCGA-C4-A0EZ-01 5 19839170 19839170 G C CDH18 5'UTR 0.64 TCGA-C4-A0EZ-01 5 22078733 22078733 C T CDH12 Missense_Mutation p.G18D 0.28 tolerated(0.29) probably_damaging(0.992) TCGA-C4-A0EZ-01 5 56177956 56177956 C T MAP3K1 Nonsense_Mutation p.Q977* 0.56 TCGA-C4-A0EZ-01 5 75893311 75893311 C T IQGAP2 Missense_Mutation p.P319S 0.28 tolerated(0.25) benign(0.027) TCGA-C4-A0EZ-01 5 96508967 96508967 C T RIOK2 Missense_Mutation p.A167T 0.30 deleterious(0) possibly_damaging(0.472) TCGA-C4-A0EZ-01 6 100841696 100841696 C T SIM1 Missense_Mutation p.D413N 0.63 tolerated(0.33) probably_damaging(0.916) TCGA-C4-A0EZ-01 6 102069950 102069950 A G GRIK2 Missense_Mutation p.Q81R 0.59 deleterious(0) probably_damaging(0.997) TCGA-C4-A0EZ-01 6 109309805 109309805 C G SESN1 Missense_Mutation p.E504Q 0.64 deleterious(0) probably_damaging(0.999) TCGA-C4-A0EZ-01 6 128134483 128134483 C T THEMIS Missense_Mutation p.V435I 0.29 tolerated(0.06) benign(0.05) TCGA-C4-A0EZ-01 6 149922846 149922846 G C KATNA1 Missense_Mutation p.L258V 0.35 deleterious(0.02) benign(0.04) TCGA-C4-A0EZ-01 6 152748941 152748941 C T SYNE1 Missense_Mutation p.E1663K 0.36 benign(0.092) TCGA-C4-A0EZ-01 6 170594690 170594690 G A DLL1 Nonsense_Mutation p.Q277* 0.34 TCGA-C4-A0EZ-01 6 32021483 32021483 C T TNXB Splice_Site p.X2823_splice 0.22 TCGA-C4-A0EZ-01 6 32095973 32095973 C G ATF6B Silent p.L4L 0.63 TCGA-C4-A0EZ-01 6 32947663 32947663 G T BRD2 Nonsense_Mutation p.E669* 0.21 TCGA-C4-A0EZ-01 6 87971008 87971008 C T ZNF292 Missense_Mutation p.S2554L 0.40 tolerated(0.73) benign(0) TCGA-C4-A0EZ-01 7 100550224 100550224 G A MUC3A Missense_Mutation p.V269M 0.40 deleterious(0.04) unknown(0) TCGA-C4-A0EZ-01 7 150696094 150696094 C T NOS3 Silent p.L293L 0.35 TCGA-C4-A0EZ-01 7 150754194 150754194 C T CDK5 Missense_Mutation p.A31T 0.26 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 7 151962186 151962186 G T KMT2C Missense_Mutation p.A374E 0.04 benign(0.296) TCGA-C4-A0EZ-01 7 24932082 24932082 C T OSBPL3 Missense_Mutation p.D4N 0.43 tolerated(0.12) benign(0.333) TCGA-C4-A0EZ-01 7 37901704 37901704 T C NME8 Silent p.D115D 0.35 TCGA-C4-A0EZ-01 7 64389174 64389174 G A ZNF273 Missense_Mutation p.E490K 0.29 tolerated(0.07) probably_damaging(0.981) TCGA-C4-A0EZ-01 7 66479465 66479465 C T TYW1 Nonsense_Mutation p.R163* 0.31 TCGA-C4-A0EZ-01 7 7278181 7278181 G A C1GALT1 Silent p.T172T 0.39 TCGA-C4-A0EZ-01 7 72865289 72865289 G A BAZ1B Silent p.I1156I 0.36 TCGA-C4-A0EZ-01 7 77265144 77265144 G A PTPN12 Missense_Mutation p.R707Q 0.55 tolerated_low_confidence(0.7) benign(0) TCGA-C4-A0EZ-01 7 99752533 99752533 C T C7orf43 3'UTR 0.62 TCGA-C4-A0EZ-01 8 101078406 101078406 G T RGS22 Nonsense_Mutation p.S238* 0.14 TCGA-C4-A0EZ-01 8 110980444 110980444 G T KCNV1 Missense_Mutation p.A459D 0.18 deleterious(0.02) benign(0.08) TCGA-C4-A0EZ-01 8 127569399 127569399 T G FAM84B Missense_Mutation p.H79P 0.43 deleterious(0.01) benign(0.062) TCGA-C4-A0EZ-01 8 21827081 21827081 G A XPO7 Missense_Mutation p.D85N 0.50 tolerated(0.06) benign(0.285) TCGA-C4-A0EZ-01 8 23429029 23429029 C T SLC25A37 Silent p.V226V 0.42 TCGA-C4-A0EZ-01 8 61654942 61654942 C G CHD7 Missense_Mutation p.N317K 0.17 benign(0.403) TCGA-C4-A0EZ-01 8 88249313 88249313 G T CNBD1 Missense_Mutation p.E248D 0.54 tolerated(0.39) benign(0.002) TCGA-C4-A0EZ-01 9 116812345 116812345 G A ZNF618 Silent p.G828G 0.27 TCGA-C4-A0EZ-01 9 130579405 130579405 C T ENG Intron 0.17 TCGA-C4-A0EZ-01 9 136402526 136402526 G A ADAMTSL2 Splice_Site p.X31_splice 0.33 TCGA-C4-A0EZ-01 9 138555250 138555250 A G LCN9 Missense_Mutation p.Y28C 0.43 deleterious(0) possibly_damaging(0.798) TCGA-C4-A0EZ-01 9 139903823 139903823 G A ABCA2 Missense_Mutation p.R2276W 0.33 deleterious(0) probably_damaging(1) TCGA-C4-A0EZ-01 9 140901335 140901335 C A CACNA1B Missense_Mutation p.N697K 0.46 deleterious(0) benign(0.213) TCGA-C4-A0EZ-01 9 18753463 18753463 G A ADAMTSL1 Missense_Mutation p.R725H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-C4-A0EZ-01 9 73002701 73002701 G A KLF9 Silent p.N242N 0.26 TCGA-C4-A0EZ-01 9 74324386 74324386 G A TMEM2 Missense_Mutation p.S925F 0.41 deleterious(0.01) benign(0.067) TCGA-C4-A0EZ-01 9 80038789 80038789 G C GNA14 3'UTR 0.37 TCGA-C4-A0EZ-01 X 101969725 101969725 C T GPRASP2 5'UTR 0.53 TCGA-C4-A0EZ-01 X 102004206 102004206 G C BHLHB9 Missense_Mutation p.E95Q 0.25 tolerated(0.06) benign(0.007) TCGA-C4-A0EZ-01 X 106846053 106846053 G T FRMPD3 Missense_Mutation p.R1628L 0.39 deleterious(0) benign(0.084) TCGA-C4-A0EZ-01 X 107037530 107037530 G C NCBP2L Missense_Mutation p.R27P 0.18 tolerated(0.07) benign(0.003) TCGA-C4-A0EZ-01 X 117053608 117053608 A G KLHL13 Missense_Mutation p.I152T 0.39 deleterious(0) probably_damaging(0.962) TCGA-C4-A0EZ-01 X 118223343 118223343 A G KIAA1210 Missense_Mutation p.M617T 0.50 tolerated(0.23) possibly_damaging(0.54) TCGA-C4-A0EZ-01 X 123504041 123504041 C T SH2D1A Missense_Mutation p.H73Y 0.36 tolerated(0.06) possibly_damaging(0.63) TCGA-C4-A0EZ-01 X 129149014 129149014 C T BCORL1 Nonsense_Mutation p.Q756* 0.25 TCGA-C4-A0EZ-01 X 133680727 133680727 T A MIR503HG 5'Flank 0.37 TCGA-C4-A0EZ-01 X 134987445 134987445 G T SAGE1 Missense_Mutation p.R116S 0.17 deleterious(0) benign(0.322) TCGA-C4-A0EZ-01 X 140271220 140271220 G A LDOC1 5'UTR 0.47 TCGA-C4-A0EZ-01 X 142596840 142596840 G A SPANXN3 Missense_Mutation p.S77F 0.45 deleterious(0) probably_damaging(0.998) TCGA-C4-A0EZ-01 X 148037678 148037678 C T AFF2 Silent p.G701G 0.19 TCGA-C4-A0EZ-01 X 149809883 149809883 C T MTM1 Nonsense_Mutation p.R224* 0.19 TCGA-C4-A0EZ-01 X 149963917 149963917 G T CD99L2 Missense_Mutation p.T107N 0.18 tolerated(0.22) possibly_damaging(0.906) TCGA-C4-A0EZ-01 X 153496064 153496064 G A OPN1MW2 Silent p.K264K 0.21 TCGA-C4-A0EZ-01 X 16669143 16669143 A T S100G Missense_Mutation p.K5M 0.19 tolerated(0.09) benign(0.068) TCGA-C4-A0EZ-01 X 29973758 29973758 C T IL1RAPL1 Silent p.L638L 0.34 TCGA-C4-A0EZ-01 X 30260833 30260833 C - MAGEB4 Frame_Shift_Del p.L195Ffs*7 0.20 TCGA-C4-A0EZ-01 X 31089732 31089732 C G FTHL17 Missense_Mutation p.Q113H 0.26 deleterious(0.02) possibly_damaging(0.554) TCGA-C4-A0EZ-01 X 3239495 3239495 T C MXRA5 Missense_Mutation p.K1411E 0.51 tolerated(0.35) benign(0.039) TCGA-C4-A0EZ-01 X 34149314 34149314 C T FAM47A Missense_Mutation p.R361H 0.21 tolerated(1) benign(0) TCGA-C4-A0EZ-01 X 44929219 44929219 A G KDM6A Silent p.L773L 0.48 TCGA-C4-A0EZ-01 X 73962089 73962089 G C KIAA2022 Nonsense_Mutation p.S768* 0.23 TCGA-C4-A0EZ-01 X 76764097 76764097 C G ATRX Missense_Mutation p.C2404S 0.42 benign(0.066) TCGA-C4-A0EZ-01 X 77528135 77528135 T C CYSLTR1 3'UTR 0.58 TCGA-C4-A0EZ-01 X 80552787 80552787 G C SH3BGRL 3'UTR 0.32 TCGA-C4-A0F0-01 10 121557048 121557048 A G INPP5F Missense_Mutation p.H315R 0.41 tolerated(0.23) possibly_damaging(0.771) TCGA-C4-A0F0-01 10 51855357 51855359 AGG - FAM21A Splice_Site p.X414_splice 0.53 TCGA-C4-A0F0-01 11 102272686 102272686 G A TMEM123 Missense_Mutation p.H137Y 0.95 tolerated(0.08) benign(0.291) TCGA-C4-A0F0-01 11 11913616 11913616 C T USP47 Silent p.S85S 0.12 TCGA-C4-A0F0-01 11 4510227 4510227 T - OR52K1 Frame_Shift_Del p.F33Sfs*10 0.38 TCGA-C4-A0F0-01 11 55587220 55587220 A T OR5D18 Missense_Mutation p.T39S 0.50 tolerated(0.11) benign(0.073) TCGA-C4-A0F0-01 11 60265167 60265167 A C MS4A12 Intron 0.75 TCGA-C4-A0F0-01 11 6789447 6789447 C T OR2AG2 Missense_Mutation p.V248I 0.55 deleterious(0.02) possibly_damaging(0.764) TCGA-C4-A0F0-01 12 122745915 122745919 TCAAC - VPS33A Frame_Shift_Del p.L125Gfs*42 0.38 TCGA-C4-A0F0-01 12 21997778 21997778 A G ABCC9 Silent p.T1056T 0.43 TCGA-C4-A0F0-01 12 30873763 30873763 C A CAPRIN2 Missense_Mutation p.M710I 0.23 tolerated(0.56) benign(0.002) TCGA-C4-A0F0-01 12 40499322 40499322 A C SLC2A13 Missense_Mutation p.Y97D 0.64 deleterious(0) probably_damaging(1) TCGA-C4-A0F0-01 12 41421677 41421677 G A CNTN1 Missense_Mutation p.R910K 0.65 tolerated(0.64) benign(0.021) TCGA-C4-A0F0-01 12 52307405 52307405 G A ACVRL1 Missense_Mutation p.V126M 0.68 tolerated(0.06) benign(0.022) TCGA-C4-A0F0-01 12 57039660 57039660 G C ATP5B Missense_Mutation p.Q30E 0.18 tolerated_low_confidence(0.12) possibly_damaging(0.857) TCGA-C4-A0F0-01 12 63543916 63543928 GTACCCAAGATGA C AVPR1A In_Frame_Del p.V230_T234delinsG 0.55 TCGA-C4-A0F0-01 12 63543928 63543928 A C AVPR1A Missense_Mutation p.V230G 0.43 tolerated(0.08) benign(0.014) TCGA-C4-A0F0-01 12 6973255 6973287 GGCTCCACAAGCGCAGCAGCCGACCCCCCTCCT - USP5 In_Frame_Del p.G714_P724del 0.15 TCGA-C4-A0F0-01 12 7656275 7656275 G A CD163 Silent p.L4L 0.13 TCGA-C4-A0F0-01 13 48947629 48947629 G T RB1 Splice_Site p.X405_splice 0.56 TCGA-C4-A0F0-01 13 76427232 76427232 G T LMO7 Nonsense_Mutation p.E1224* 0.26 TCGA-C4-A0F0-01 14 54418914 54418914 C A BMP4 Missense_Mutation p.M9I 0.39 deleterious(0.02) benign(0.256) TCGA-C4-A0F0-01 14 77275517 77275517 T C ANGEL1 Silent p.P178P 0.31 TCGA-C4-A0F0-01 15 25925012 25925012 C A ATP10A Missense_Mutation p.A1326S 0.50 tolerated(0.33) benign(0.004) TCGA-C4-A0F0-01 15 66777338 66777338 T A MAP2K1 Missense_Mutation p.L235H 0.36 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F0-01 15 76225291 76225291 T G FBXO22 Missense_Mutation p.L354V 0.35 deleterious(0) probably_damaging(0.977) TCGA-C4-A0F0-01 15 80191455 80191455 C T ST20 Missense_Mutation p.V20I 0.29 tolerated_low_confidence(0.12) possibly_damaging(0.621) TCGA-C4-A0F0-01 16 19547561 19547561 C G CCP110 Silent p.T190T 0.66 TCGA-C4-A0F0-01 16 20337750 20337750 G C GP2 Missense_Mutation p.P2A 0.68 tolerated_low_confidence(0.13) benign(0.004) TCGA-C4-A0F0-01 16 3556338 3556338 C G CLUAP1 Missense_Mutation p.P48A 0.62 deleterious(0.01) possibly_damaging(0.759) TCGA-C4-A0F0-01 16 3788647 3788647 C T CREBBP Missense_Mutation p.S1436N 0.75 unknown(0) TCGA-C4-A0F0-01 16 53967950 53967950 G A FTO Silent p.R431R 0.06 TCGA-C4-A0F0-01 16 68842337 68842337 C T CDH1 Missense_Mutation p.S133F 0.40 deleterious(0.03) benign(0.128) TCGA-C4-A0F0-01 16 70917863 70917863 G A HYDIN Silent p.A3313A 0.16 TCGA-C4-A0F0-01 16 88706603 88706603 C T IL17C 3'UTR 0.52 TCGA-C4-A0F0-01 17 34235862 34235862 C T AC015849.16 RNA 0.08 TCGA-C4-A0F0-01 17 39623211 39623211 C T KRT32 Missense_Mutation p.E123K 0.24 deleterious(0.01) benign(0.096) TCGA-C4-A0F0-01 17 42984646 42984646 G A GFAP 3'Flank 0.10 TCGA-C4-A0F0-01 17 4510756 4510758 TAC AA SMTNL2 Frame_Shift_Del p.Y454Kfs*64 0.31 TCGA-C4-A0F0-01 17 60673977 60673977 G C TLK2 Missense_Mutation p.E498Q 0.25 tolerated(0.31) benign(0.036) TCGA-C4-A0F0-01 18 28576944 28576944 G C DSC3 Nonsense_Mutation p.S769* 0.25 TCGA-C4-A0F0-01 18 50450132 50450132 C A DCC Silent p.A251A 0.34 TCGA-C4-A0F0-01 18 51013172 51013172 G A DCC Missense_Mutation p.V1248M 0.42 deleterious(0.02) probably_damaging(0.981) TCGA-C4-A0F0-01 18 6876136 6876136 G C ARHGAP28 Missense_Mutation p.E248Q 0.08 tolerated(0.22) benign(0.014) TCGA-C4-A0F0-01 19 21300901 21300901 G A ZNF714 Silent p.E477E 0.25 TCGA-C4-A0F0-01 19 22362431 22362431 C A ZNF676 3'UTR 0.36 TCGA-C4-A0F0-01 19 3550991 3550991 G A MFSD12 Missense_Mutation p.T167M 0.59 probably_damaging(0.985) TCGA-C4-A0F0-01 19 36387690 36387690 A T NFKBID Missense_Mutation p.Y66N 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-C4-A0F0-01 19 38893808 38893808 G A FAM98C Silent p.K5K 0.17 TCGA-C4-A0F0-01 19 44514476 44514476 C G ZNF230 Missense_Mutation p.I95M 0.15 deleterious(0.01) possibly_damaging(0.786) TCGA-C4-A0F0-01 19 55298001 55298001 C T KIR2DL1 3'Flank 0.48 TCGA-C4-A0F0-01 19 58152819 58152819 T C ZNF211 Missense_Mutation p.F387S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-C4-A0F0-01 19 8122718 8122718 G C CCL25 Missense_Mutation p.G120A 0.26 tolerated(0.08) benign(0.001) TCGA-C4-A0F0-01 1 11596720 11596720 C T PTCHD2 Silent p.L1386L 0.23 TCGA-C4-A0F0-01 1 171086316 171086316 C T FMO3 Missense_Mutation p.P445S 0.42 deleterious(0.01) possibly_damaging(0.861) TCGA-C4-A0F0-01 1 175067712 175067712 C T TNN Silent p.A700A 0.26 TCGA-C4-A0F0-01 1 17690129 17690129 G A PADI4 Missense_Mutation p.G624D 0.13 deleterious(0.03) probably_damaging(1) TCGA-C4-A0F0-01 1 197881675 197881675 C - LHX9 5'Flank 0.34 TCGA-C4-A0F0-01 1 202710600 202710600 C T KDM5B Missense_Mutation p.G947E 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-C4-A0F0-01 1 206944749 206944759 ATCCTTCATTT - IL10 Frame_Shift_Del p.Q56Pfs*16 0.29 TCGA-C4-A0F0-01 1 247835572 247835572 G - OR13G1 Frame_Shift_Del p.R258Afs*14 0.31 TCGA-C4-A0F0-01 1 248570286 248570286 C T OR2T1 Missense_Mutation p.L331F 0.22 tolerated(0.29) benign(0.443) TCGA-C4-A0F0-01 1 3672130 3672130 C T CCDC27 Silent p.D184D 0.08 TCGA-C4-A0F0-01 1 36859515 36859515 G C LSM10 Silent p.L72L 0.19 TCGA-C4-A0F0-01 1 7798119 7798119 C G CAMTA1 Missense_Mutation p.F1253L 0.21 tolerated_low_confidence(1) benign(0.004) TCGA-C4-A0F0-01 1 84373315 84373315 G A TTLL7 Missense_Mutation p.R606W 0.13 deleterious(0) possibly_damaging(0.836) TCGA-C4-A0F0-01 20 23066316 23066316 C T CD93 Missense_Mutation p.G172R 0.10 tolerated(0.06) possibly_damaging(0.898) TCGA-C4-A0F0-01 20 3147630 3147630 C T LZTS3 Silent p.G60G 0.37 TCGA-C4-A0F0-01 20 39992445 39992445 A T EMILIN3 Missense_Mutation p.L116H 0.32 deleterious(0) probably_damaging(0.984) TCGA-C4-A0F0-01 20 44640354 44640354 G A MMP9 Missense_Mutation p.R322Q 0.11 tolerated(1) benign(0.001) TCGA-C4-A0F0-01 21 34926719 34926719 A G SON Missense_Mutation p.I1728V 0.34 benign(0.031) TCGA-C4-A0F0-01 21 47783573 47783573 C G PCNT Missense_Mutation p.A778G 0.09 possibly_damaging(0.739) TCGA-C4-A0F0-01 22 16279260 16279260 T C POTEH Silent p.K321K 0.06 TCGA-C4-A0F0-01 22 22782206 22782206 C A IGLV5-37 Silent p.L68L 0.27 TCGA-C4-A0F0-01 22 32647856 32647856 G A SLC5A4 Silent p.G71G 0.56 TCGA-C4-A0F0-01 22 38696882 38696883 GC - CSNK1E Frame_Shift_Del p.L138Gfs*51 0.40 TCGA-C4-A0F0-01 2 179597433 179597433 A G TTN Missense_Mutation p.F5452S 0.43 TCGA-C4-A0F0-01 2 201846351 201846351 G - FAM126B Frame_Shift_Del p.P412Qfs*6 0.12 TCGA-C4-A0F0-01 2 227953429 227953429 G T COL4A4 Silent p.G521G 0.62 TCGA-C4-A0F0-01 2 228194378 228194378 A G MFF 5'UTR 0.08 TCGA-C4-A0F0-01 2 27917614 27917614 A G SLC4A1AP 3'UTR 0.51 TCGA-C4-A0F0-01 2 53992709 53992709 T C GPR75-ASB3 Missense_Mutation p.M39V 0.13 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F0-01 2 74043846 74043846 G T C2orf78 Silent p.V832V 0.11 TCGA-C4-A0F0-01 3 100364943 100364943 T C GPR128 Silent p.F367F 0.36 TCGA-C4-A0F0-01 3 120973778 120973778 A T STXBP5L Missense_Mutation p.K493I 0.33 deleterious(0) probably_damaging(0.912) TCGA-C4-A0F0-01 3 122134390 122134390 A T WDR5B 5'UTR 0.25 TCGA-C4-A0F0-01 3 132050577 132050577 G A ACPP Silent p.Q101Q 0.27 TCGA-C4-A0F0-01 3 149684111 149684111 G C PFN2 3'UTR 0.24 TCGA-C4-A0F0-01 3 179050893 179050893 C T ZNF639 Missense_Mutation p.H96Y 0.33 tolerated(0.42) benign(0.003) TCGA-C4-A0F0-01 3 184971824 184971833 CCGAGGGCAC - EHHADH 5'UTR 0.32 TCGA-C4-A0F0-01 3 37826549 37826549 G C ITGA9 Missense_Mutation p.G957R 0.23 tolerated(0.26) probably_damaging(0.961) TCGA-C4-A0F0-01 3 48453976 48453976 G A PLXNB1 Silent p.Y1636Y 0.23 TCGA-C4-A0F0-01 3 48605196 48605196 C A COL7A1 Nonsense_Mutation p.G2644* 0.27 TCGA-C4-A0F0-01 3 50114585 50114585 T C RBM6 3'UTR 0.22 TCGA-C4-A0F0-01 3 66430809 66430809 A G LRIG1 Missense_Mutation p.Y1054H 0.22 tolerated_low_confidence(1) benign(0) TCGA-C4-A0F0-01 4 128632073 128632073 C T INTU Missense_Mutation p.T792I 0.62 deleterious(0) probably_damaging(0.997) TCGA-C4-A0F0-01 4 144134859 144134859 G A USP38 Missense_Mutation p.R577H 0.14 tolerated(0.28) benign(0) TCGA-C4-A0F0-01 4 144826703 144826704 - ACCAAAG GYPE 5'UTR 0.32 TCGA-C4-A0F0-01 4 147628704 147628704 C T TTC29 Splice_Site p.X444_splice 0.52 TCGA-C4-A0F0-01 4 153253770 153253770 C T FBXW7 Nonsense_Mutation p.W321* 0.63 TCGA-C4-A0F0-01 4 72399971 72399971 G A SLC4A4 Missense_Mutation p.V770I 0.38 tolerated(0.77) benign(0.166) TCGA-C4-A0F0-01 5 137761206 137761206 G T KDM3B Missense_Mutation p.R1449M 0.22 deleterious(0) benign(0.322) TCGA-C4-A0F0-01 5 137891640 137891640 C T HSPA9 3'UTR 0.55 TCGA-C4-A0F0-01 5 140537610 140537610 G A PCDHB17 3'UTR 0.23 TCGA-C4-A0F0-01 5 21459679 21459679 C T GUSBP1 RNA 0.06 TCGA-C4-A0F0-01 5 45303773 45303773 G A HCN1 Nonsense_Mutation p.Q516* 0.08 TCGA-C4-A0F0-01 5 71494957 71494957 C G MAP1B Silent p.T1925T 0.10 TCGA-C4-A0F0-01 5 96518898 96518898 C T CTD-2215E18.1 Silent p.G73G 0.20 TCGA-C4-A0F0-01 6 137815405 137815405 C A OLIG3 5'UTR 0.23 TCGA-C4-A0F0-01 6 29408490 29408490 G A OR10C1 Missense_Mutation p.R233H 0.09 deleterious(0) probably_damaging(0.99) TCGA-C4-A0F0-01 6 33663645 33663645 G A ITPR3 3'UTR 0.33 TCGA-C4-A0F0-01 6 47649716 47649716 A T GPR111 Missense_Mutation p.Q474L 0.52 tolerated(0.05) possibly_damaging(0.765) TCGA-C4-A0F0-01 7 100189393 100189393 C T FBXO24 Silent p.T180T 0.37 TCGA-C4-A0F0-01 7 103243875 103243875 A G RELN Missense_Mutation p.M1070T 0.24 tolerated(0.13) benign(0.09) TCGA-C4-A0F0-01 7 122338738 122338738 C G RNF133 Missense_Mutation p.E79Q 0.27 tolerated(0.13) benign(0.062) TCGA-C4-A0F0-01 7 17378759 17378759 G T AHR Missense_Mutation p.G437V 0.34 tolerated(0.11) benign(0.104) TCGA-C4-A0F0-01 7 31912954 31912954 A G PDE1C Missense_Mutation p.F247S 0.46 deleterious(0) possibly_damaging(0.829) TCGA-C4-A0F0-01 7 48547569 48547576 TTGGAGCC - ABCA13 Frame_Shift_Del p.I4483Kfs*22 0.23 TCGA-C4-A0F0-01 7 83675657 83675657 T A SEMA3A Missense_Mutation p.D217V 0.11 deleterious(0) probably_damaging(0.997) TCGA-C4-A0F0-01 7 99117480 99117480 C T ZKSCAN5 Missense_Mutation p.P195L 0.24 deleterious(0.05) possibly_damaging(0.711) TCGA-C4-A0F0-01 8 121457679 121457679 A T MTBP 5'UTR 0.53 TCGA-C4-A0F0-01 8 131861957 131861957 G C ADCY8 Missense_Mutation p.P768R 0.24 deleterious(0) benign(0) TCGA-C4-A0F0-01 8 145770746 145770746 C T ARHGAP39 Missense_Mutation p.R803H 0.09 tolerated(0.55) probably_damaging(0.992) TCGA-C4-A0F0-01 8 41615618 41615618 G A ANK1 Missense_Mutation p.S55L 0.17 deleterious(0) possibly_damaging(0.767) TCGA-C4-A0F0-01 8 70515424 70515426 CAG T SULF1 Splice_Site p.X354_splice 0.20 TCGA-C4-A0F0-01 8 81431122 81431133 GATCATTTAGCT - ZBTB10 In_Frame_Del p.R748_C752delinsS 0.21 TCGA-C4-A0F0-01 9 137713940 137713940 C T COL5A1 Intron 0.10 TCGA-C4-A0F0-01 9 37746199 37746199 C T FRMPD1 Silent p.T1390T 0.47 TCGA-C4-A0F0-01 9 77642968 77642968 C T C9orf41 Missense_Mutation p.E64K 0.29 tolerated(0.7) unknown(0) TCGA-C4-A0F0-01 9 77642970 77642970 C T C9orf41 Missense_Mutation p.R63H 0.29 tolerated(0.06) unknown(0) TCGA-C4-A0F0-01 9 79118499 79118499 A C GCNT1 Missense_Mutation p.K401T 0.11 deleterious(0) probably_damaging(1) TCGA-C4-A0F0-01 9 84562651 84562651 C A RP11-383M4.6 Intron 0.44 TCGA-C4-A0F0-01 9 88272367 88272367 G A AGTPBP1 Silent p.L298L 0.11 TCGA-C4-A0F0-01 9 90584799 90584799 C A CDK20 Missense_Mutation p.G200V 0.37 tolerated(0.49) benign(0.405) TCGA-C4-A0F0-01 X 152994806 152994806 C T ABCD1 Silent p.S340S 0.11 TCGA-C4-A0F0-01 X 34657461 34657461 G T TMEM47 Silent p.A90A 0.50 TCGA-C4-A0F0-01 X 39933138 39933138 T C BCOR Silent p.L487L 0.69 TCGA-C4-A0F0-01 X 49089732 49089749 GAAGGATTCTCTCACCTT - CACNA1F Splice_Site p.X8_splice 0.40 TCGA-C4-A0F1-01 10 120801973 120801973 C T EIF3A Missense_Mutation p.R1020Q 0.29 tolerated(0.05) probably_damaging(0.96) TCGA-C4-A0F1-01 10 134671235 134671235 C T TTC40 Silent p.A1811A 0.26 TCGA-C4-A0F1-01 10 30602779 30602779 C T MTPAP Missense_Mutation p.R503Q 0.29 tolerated(0.23) benign(0.023) TCGA-C4-A0F1-01 10 32345013 32345013 C G KIF5B 5'UTR 0.30 TCGA-C4-A0F1-01 10 76797697 76797697 C T DUPD1 Missense_Mutation p.R187Q 0.26 tolerated(0.15) possibly_damaging(0.724) TCGA-C4-A0F1-01 10 7708859 7708859 G A ITIH5 5'UTR 0.52 TCGA-C4-A0F1-01 10 89268152 89268152 G C MINPP1 Missense_Mutation p.E233Q 0.37 tolerated(0.14) benign(0.145) TCGA-C4-A0F1-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.22 TCGA-C4-A0F1-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.33 TCGA-C4-A0F1-01 11 118376454 118376454 C T KMT2A Nonsense_Mutation p.R3283* 0.41 TCGA-C4-A0F1-01 11 123848195 123848195 G C OR10S1 Silent p.L68L 0.17 TCGA-C4-A0F1-01 11 124294748 124294748 G A OR8B4 Missense_Mutation p.S7F 0.24 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-C4-A0F1-01 11 125891384 125891384 G C CDON Silent p.L36L 0.31 TCGA-C4-A0F1-01 11 18231258 18231258 C T RP11-113D6.10 Missense_Mutation p.S15L 0.23 deleterious_low_confidence(0) benign(0.096) TCGA-C4-A0F1-01 11 28090880 28090880 C G KIF18A Missense_Mutation p.D506H 0.29 tolerated(0.06) benign(0.004) TCGA-C4-A0F1-01 11 35640755 35640755 G A FJX1 Missense_Mutation p.E191K 0.30 deleterious(0) probably_damaging(0.98) TCGA-C4-A0F1-01 11 43356859 43356859 G A API5 Missense_Mutation p.S437N 0.33 deleterious(0.03) probably_damaging(0.968) TCGA-C4-A0F1-01 11 56086697 56086697 T A OR8K3 Missense_Mutation p.N305K 0.22 tolerated_low_confidence(1) benign(0.001) TCGA-C4-A0F1-01 11 612784 612784 C A IRF7 Missense_Mutation p.C471F 0.30 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 11 61729849 61729849 C G BEST1 Nonsense_Mutation p.S348* 0.26 TCGA-C4-A0F1-01 11 62433975 62433975 G A METTL12 Missense_Mutation p.E59K 0.36 tolerated(0.23) benign(0.296) TCGA-C4-A0F1-01 11 62554783 62554783 C T TAF6L 3'UTR 0.20 TCGA-C4-A0F1-01 11 70281229 70281229 C T CTTN Intron 0.34 TCGA-C4-A0F1-01 11 93778916 93778916 C T HEPHL1 Missense_Mutation p.T83M 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-C4-A0F1-01 12 111348834 111348834 G A MYL2 3'UTR 0.22 TCGA-C4-A0F1-01 12 119942996 119942996 G T CCDC60 Silent p.V257V 0.23 TCGA-C4-A0F1-01 12 122992836 122992836 C T RSRC2 Missense_Mutation p.A322T 0.18 deleterious(0.04) unknown(0) TCGA-C4-A0F1-01 12 123253605 123253605 C A DENR Missense_Mutation p.L193I 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-C4-A0F1-01 12 2967845 2967845 C T FOXM1 Missense_Mutation p.D789N 0.29 deleterious(0.03) probably_damaging(0.944) TCGA-C4-A0F1-01 12 32138214 32138214 G A KIAA1551 Missense_Mutation p.R1442K 0.24 tolerated(0.42) benign(0.111) TCGA-C4-A0F1-01 12 44781901 44781901 G A TMEM117 Missense_Mutation p.G331R 0.39 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 12 45410035 45410035 G A DBX2 3'UTR 0.40 TCGA-C4-A0F1-01 12 4722727 4722727 G A DYRK4 Silent p.T457T 0.21 TCGA-C4-A0F1-01 12 49424159 49424159 G A KMT2D Nonsense_Mutation p.Q4635* 0.32 TCGA-C4-A0F1-01 12 7045608 7045608 C G ATN1 Missense_Mutation p.S393C 0.28 probably_damaging(0.954) TCGA-C4-A0F1-01 13 28897021 28897021 C T FLT1 Silent p.K953K 0.29 TCGA-C4-A0F1-01 13 35619479 35619479 C T NBEA Nonsense_Mutation p.Q222* 0.33 TCGA-C4-A0F1-01 13 43935581 43935581 G A ENOX1 Silent p.I72I 0.28 TCGA-C4-A0F1-01 13 50306520 50306520 C G KPNA3 Missense_Mutation p.E124Q 0.28 tolerated(0.35) benign(0.038) TCGA-C4-A0F1-01 13 77574603 77574603 C G CLN5 Missense_Mutation p.F241L 0.29 tolerated(0.08) probably_damaging(0.994) TCGA-C4-A0F1-01 14 105397201 105397201 G A PLD4 Silent p.Q280Q 0.30 TCGA-C4-A0F1-01 14 21238299 21238299 C T EDDM3B 5'UTR 0.40 TCGA-C4-A0F1-01 14 51226630 51226630 C T NIN Missense_Mutation p.E782K 0.32 deleterious(0.02) benign(0.057) TCGA-C4-A0F1-01 14 61486269 61486269 C A SLC38A6 Missense_Mutation p.A125E 0.29 deleterious(0.04) probably_damaging(0.975) TCGA-C4-A0F1-01 14 70459181 70459181 G A SMOC1 Missense_Mutation p.D192N 0.12 deleterious(0.04) benign(0.152) TCGA-C4-A0F1-01 14 88934319 88934319 C T PTPN21 3'UTR 0.36 TCGA-C4-A0F1-01 14 88934332 88934332 C T PTPN21 3'UTR 0.41 TCGA-C4-A0F1-01 14 91681828 91681828 G A C14orf159 Silent p.L548L 0.27 TCGA-C4-A0F1-01 14 91700960 91700960 G A GPR68 Silent p.I145I 0.27 TCGA-C4-A0F1-01 14 92506013 92506013 C T TRIP11 Missense_Mutation p.G6E 0.26 tolerated(0.05) unknown(0) TCGA-C4-A0F1-01 15 40500941 40500941 G A BUB1B Missense_Mutation p.E705K 0.20 deleterious(0.02) possibly_damaging(0.682) TCGA-C4-A0F1-01 15 41388034 41388034 G A INO80 Missense_Mutation p.S79L 0.27 tolerated(0.15) benign(0.016) TCGA-C4-A0F1-01 15 41657737 41657737 G C NUSAP1 Silent p.L266L 0.16 TCGA-C4-A0F1-01 15 58861007 58861007 C G LIPC Nonsense_Mutation p.S494* 0.22 TCGA-C4-A0F1-01 15 59146724 59146724 C G FAM63B Missense_Mutation p.S594C 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-C4-A0F1-01 15 65491367 65491367 C G CILP Missense_Mutation p.Q419H 0.21 deleterious(0) probably_damaging(0.993) TCGA-C4-A0F1-01 15 70346924 70346924 G A TLE3 Missense_Mutation p.S563L 0.29 deleterious(0) benign(0.368) TCGA-C4-A0F1-01 15 83296112 83296112 C G CPEB1 Missense_Mutation p.E8Q 0.19 deleterious_low_confidence(0.04) benign(0.176) TCGA-C4-A0F1-01 16 14294324 14294324 G A MKL2 Intron 0.22 TCGA-C4-A0F1-01 16 16139789 16139789 C T ABCC1 Silent p.L379L 0.20 TCGA-C4-A0F1-01 16 2155925 2155925 G A PKD1 Nonsense_Mutation p.Q2602* 0.25 TCGA-C4-A0F1-01 16 2813979 2813979 G A SRRM2 Silent p.S1150S 0.21 TCGA-C4-A0F1-01 16 31439079 31439079 G A COX6A2 3'UTR 0.42 TCGA-C4-A0F1-01 16 3781375 3781375 G A CREBBP Missense_Mutation p.R1664C 0.33 unknown(0) TCGA-C4-A0F1-01 16 57755576 57755576 C T CCDC135 Intron 0.28 TCGA-C4-A0F1-01 16 57755605 57755605 C A CCDC135 Missense_Mutation p.F411L 0.28 tolerated(0.23) benign(0.16) TCGA-C4-A0F1-01 16 601635 601635 C T CAPN15 Silent p.V772V 0.35 TCGA-C4-A0F1-01 16 68718667 68718667 C T CDH3 Missense_Mutation p.T455I 0.22 tolerated(0.21) benign(0.002) TCGA-C4-A0F1-01 16 85689517 85689517 C T GSE1 Missense_Mutation p.A328V 0.24 deleterious(0.01) unknown(0) TCGA-C4-A0F1-01 16 87743101 87743101 C A KLHDC4 Missense_Mutation p.G406V 0.25 tolerated(0.18) benign(0.032) TCGA-C4-A0F1-01 16 89977011 89977011 C G TCF25 Missense_Mutation p.I604M 0.17 tolerated(0.2) benign(0.012) TCGA-C4-A0F1-01 17 10419637 10419637 T G MYH1 Missense_Mutation p.Q76P 0.19 deleterious(0.02) possibly_damaging(0.823) TCGA-C4-A0F1-01 17 10442618 10442618 C T MYH2 Silent p.L440L 0.15 TCGA-C4-A0F1-01 17 2265472 2265472 C T SGSM2 Silent p.L122L 0.46 TCGA-C4-A0F1-01 17 30685544 30685544 C G ZNF207 Missense_Mutation p.A64G 0.22 tolerated(0.33) possibly_damaging(0.866) TCGA-C4-A0F1-01 17 39261650 39261650 T C KRTAP4-9 Missense_Mutation p.S4P 0.27 deleterious(0) unknown(0) TCGA-C4-A0F1-01 17 40870014 40870014 T C EZH1 Missense_Mutation p.T335A 0.16 tolerated(0.76) benign(0) TCGA-C4-A0F1-01 17 43195396 43195396 C T PLCD3 Missense_Mutation p.D409N 0.17 deleterious(0.02) probably_damaging(1) TCGA-C4-A0F1-01 17 4804616 4804616 G A C17orf107 3'UTR 0.25 TCGA-C4-A0F1-01 17 48174834 48174834 G C PDK2 Missense_Mutation p.E56Q 0.36 deleterious(0.02) possibly_damaging(0.794) TCGA-C4-A0F1-01 17 51901324 51901324 G A KIF2B Silent p.T310T 0.48 TCGA-C4-A0F1-01 17 56233157 56233157 C T OR4D1 Silent p.L215L 0.50 TCGA-C4-A0F1-01 17 57148206 57148206 G A TRIM37 Missense_Mutation p.P263S 0.20 tolerated(0.07) benign(0.04) TCGA-C4-A0F1-01 17 71204383 71204383 C T FAM104A 3'UTR 0.51 TCGA-C4-A0F1-01 17 7214697 7214697 C A EIF5A Nonsense_Mutation p.S130* 0.16 TCGA-C4-A0F1-01 17 76167700 76167700 C T SYNGR2 Silent p.I149I 0.33 TCGA-C4-A0F1-01 17 76219552 76219552 G A BIRC5 Missense_Mutation p.E139K 0.37 tolerated(0.78) possibly_damaging(0.671) TCGA-C4-A0F1-01 17 7702000 7702000 G A DNAH2 Silent p.E2841E 0.52 TCGA-C4-A0F1-01 17 8285553 8285553 G C RPL26 Missense_Mutation p.R26G 0.14 deleterious(0.03) probably_damaging(0.974) TCGA-C4-A0F1-01 18 20877820 20877820 G A TMEM241 3'UTR 0.27 TCGA-C4-A0F1-01 18 20877826 20877826 G A TMEM241 3'UTR 0.27 TCGA-C4-A0F1-01 18 20877894 20877894 G A TMEM241 3'UTR 0.28 TCGA-C4-A0F1-01 18 34387820 34387820 C T TPGS2 Silent p.V81V 0.32 TCGA-C4-A0F1-01 18 34839222 34839222 C G CELF4 Missense_Mutation p.E419Q 0.26 deleterious(0.02) benign(0.262) TCGA-C4-A0F1-01 19 1986426 1986426 G C BTBD2 3'UTR 0.22 TCGA-C4-A0F1-01 19 36221009 36221009 G A KMT2B Missense_Mutation p.D1687N 0.29 probably_damaging(0.932) TCGA-C4-A0F1-01 19 37310567 37310567 C G ZNF790 Missense_Mutation p.E227Q 0.33 tolerated(0.12) benign(0.058) TCGA-C4-A0F1-01 19 4168351 4168351 G A CREB3L3 Missense_Mutation p.E240K 0.24 deleterious(0) probably_damaging(0.996) TCGA-C4-A0F1-01 19 4168358 4168358 G A CREB3L3 Missense_Mutation p.R242Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-C4-A0F1-01 19 4550273 4550273 C G SEMA6B Missense_Mutation p.C378S 0.26 deleterious(0) probably_damaging(0.987) TCGA-C4-A0F1-01 19 4550808 4550808 C T SEMA6B Intron 0.32 TCGA-C4-A0F1-01 19 47349397 47349397 G A AP2S1 Silent p.I2I 0.27 TCGA-C4-A0F1-01 19 48343102 48343102 G A CRX Missense_Mutation p.A260T 0.29 tolerated(0.2) benign(0) TCGA-C4-A0F1-01 19 51022595 51022595 G A LRRC4B Silent p.I125I 0.23 TCGA-C4-A0F1-01 19 54745730 54745730 G A LILRA6 Missense_Mutation p.S127L 0.29 tolerated(0.08) possibly_damaging(0.582) TCGA-C4-A0F1-01 19 56733572 56733572 C T ZSCAN5A Missense_Mutation p.R288K 0.33 tolerated(0.14) benign(0.338) TCGA-C4-A0F1-01 19 6760801 6760801 C T SH2D3A Silent p.P89P 0.28 TCGA-C4-A0F1-01 19 9057196 9057196 G A MUC16 Silent p.L10084L 0.21 TCGA-C4-A0F1-01 1 101194673 101194673 T C VCAM1 Silent p.F313F 0.28 TCGA-C4-A0F1-01 1 109806818 109806818 G A CELSR2 Missense_Mutation p.G1707E 0.24 tolerated(0.4) benign(0.216) TCGA-C4-A0F1-01 1 109806952 109806952 G A CELSR2 Missense_Mutation p.G1752S 0.24 tolerated(0.67) benign(0.015) TCGA-C4-A0F1-01 1 11561631 11561631 G T PTCHD2 Missense_Mutation p.K194N 0.35 tolerated_low_confidence(0.26) benign(0.034) TCGA-C4-A0F1-01 1 144903050 144903050 G A PDE4DIP Intron 0.18 TCGA-C4-A0F1-01 1 145608196 145608196 C T POLR3C Silent p.E167E 0.13 TCGA-C4-A0F1-01 1 152193724 152193724 A T HRNR Missense_Mutation p.F127L 0.15 benign(0.18) TCGA-C4-A0F1-01 1 16375484 16375484 C T CLCNKB Intron 0.25 TCGA-C4-A0F1-01 1 168034939 168034939 G C DCAF6 Missense_Mutation p.D851H 0.58 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 1 17330838 17330838 G A ATP13A2 Silent p.F182F 0.20 TCGA-C4-A0F1-01 1 201056980 201056980 G A CACNA1S Silent p.L326L 0.11 TCGA-C4-A0F1-01 1 207314560 207314560 C T C4BPA Silent p.V461V 0.19 TCGA-C4-A0F1-01 1 222826648 222826648 G C MIA3 Missense_Mutation p.D1430H 0.21 deleterious(0.02) benign(0.021) TCGA-C4-A0F1-01 1 236208952 236208952 G C NID1 Missense_Mutation p.S186C 0.19 deleterious(0.04) probably_damaging(0.95) TCGA-C4-A0F1-01 1 28212380 28212380 G A THEMIS2 Missense_Mutation p.D627N 0.25 tolerated(0.34) benign(0.003) TCGA-C4-A0F1-01 1 32043028 32043028 C T TINAGL1 Silent p.L93L 0.27 TCGA-C4-A0F1-01 1 32264127 32264127 G T SPOCD1 Silent p.L648L 0.19 TCGA-C4-A0F1-01 1 66091839 66091839 G A LEPR Intron 0.12 TCGA-C4-A0F1-01 20 19955572 19955572 G T RIN2 Silent p.T350T 0.23 TCGA-C4-A0F1-01 20 31699226 31699226 T C BPIFB4 Silent p.L610L 0.30 TCGA-C4-A0F1-01 20 34242690 34242690 G T RBM12 Silent p.V185V 0.22 TCGA-C4-A0F1-01 20 43255222 43255222 G A ADA Silent p.I79I 0.28 TCGA-C4-A0F1-01 20 44004152 44004152 C G TP53TG5 Missense_Mutation p.E99Q 0.33 deleterious(0.04) possibly_damaging(0.826) TCGA-C4-A0F1-01 20 44589147 44589147 C G ZNF335 Missense_Mutation p.K600N 0.29 deleterious(0.02) probably_damaging(1) TCGA-C4-A0F1-01 21 43413917 43413917 C T ZBTB21 Silent p.K96K 0.29 TCGA-C4-A0F1-01 21 46066356 46066356 C G KRTAP10-11 5'UTR 0.29 TCGA-C4-A0F1-01 22 20457929 20457929 C T RIMBP3 Missense_Mutation p.G1125S 0.10 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 22 20939289 20939289 G A MED15 Missense_Mutation p.G651S 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-C4-A0F1-01 22 22730631 22730631 C G IGLV5-45 Silent p.T42T 0.15 TCGA-C4-A0F1-01 22 27008146 27008146 G T CRYBB1 Silent p.V63V 0.20 TCGA-C4-A0F1-01 22 38327931 38327931 C T MICALL1 Silent p.I669I 0.30 TCGA-C4-A0F1-01 22 38328839 38328839 C T MICALL1 Silent p.F726F 0.15 TCGA-C4-A0F1-01 22 46722532 46722532 C T GTSE1 Missense_Mutation p.R569C 0.21 deleterious(0) probably_damaging(0.939) TCGA-C4-A0F1-01 2 106471515 106471515 G C NCK2 5'UTR 0.29 TCGA-C4-A0F1-01 2 112766049 112766049 C G MERTK Missense_Mutation p.L653V 0.32 deleterious(0.03) possibly_damaging(0.804) TCGA-C4-A0F1-01 2 158165235 158165235 G C GALNT5 Missense_Mutation p.E893Q 0.28 tolerated(0.1) possibly_damaging(0.649) TCGA-C4-A0F1-01 2 158980394 158980394 C G UPP2 Silent p.L323L 0.26 TCGA-C4-A0F1-01 2 18112633 18112633 C T KCNS3 Missense_Mutation p.R120C 0.23 deleterious(0) possibly_damaging(0.794) TCGA-C4-A0F1-01 2 191227381 191227381 G A INPP1 Missense_Mutation p.G78E 0.24 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 2 21239390 21239390 C T APOB Missense_Mutation p.E1085K 0.29 benign(0) TCGA-C4-A0F1-01 2 21250702 21250702 C T APOB Missense_Mutation p.E689K 0.26 probably_damaging(0.996) TCGA-C4-A0F1-01 2 223553091 223553091 G T MOGAT1 Missense_Mutation p.M41I 0.28 tolerated(0.42) benign(0.003) TCGA-C4-A0F1-01 2 230902218 230902218 C T SLC16A14 Missense_Mutation p.D471N 0.41 tolerated(0.07) probably_damaging(0.978) TCGA-C4-A0F1-01 2 234638460 234638460 C A UGT1A3 Missense_Mutation p.P230T 0.24 tolerated(0.25) possibly_damaging(0.482) TCGA-C4-A0F1-01 2 235962412 235962412 G A SH3BP4 Silent p.L948L 0.29 TCGA-C4-A0F1-01 2 24305998 24305998 G A TP53I3 Missense_Mutation p.P55S 0.29 tolerated(0.05) benign(0.01) TCGA-C4-A0F1-01 2 29072852 29072852 C T TRMT61B 3'UTR 0.32 TCGA-C4-A0F1-01 2 64779737 64779737 G C AFTPH Missense_Mutation p.D377H 0.28 tolerated(0.06) probably_damaging(0.959) TCGA-C4-A0F1-01 2 74273845 74273845 G C TET3 Missense_Mutation p.M132I 0.04 tolerated(0.42) benign(0.045) TCGA-C4-A0F1-01 2 98737802 98737802 C T VWA3B Missense_Mutation p.P195S 0.25 tolerated(0.12) possibly_damaging(0.457) TCGA-C4-A0F1-01 3 11354786 11354786 G C ATG7 Missense_Mutation p.K140N 0.18 deleterious(0) probably_damaging(0.924) TCGA-C4-A0F1-01 3 133534474 133534474 G A SRPRB Missense_Mutation p.E151K 0.56 deleterious(0) probably_damaging(0.991) TCGA-C4-A0F1-01 3 142231262 142231262 T G ATR Silent p.I1564I 0.23 TCGA-C4-A0F1-01 3 151599155 151599155 C T SUCNR1 Missense_Mutation p.S275F 0.53 tolerated(0.06) benign(0.078) TCGA-C4-A0F1-01 3 154018909 154018909 G C DHX36 Missense_Mutation p.P409A 0.20 tolerated(0.06) benign(0.168) TCGA-C4-A0F1-01 3 179291159 179291159 G A ACTL6A Missense_Mutation p.E94K 0.18 tolerated(0.08) probably_damaging(0.947) TCGA-C4-A0F1-01 3 179460036 179460036 G A USP13 Missense_Mutation p.E478K 0.13 deleterious(0) benign(0.145) TCGA-C4-A0F1-01 3 186954017 186954017 G A MASP1 Nonsense_Mutation p.Q548* 0.60 TCGA-C4-A0F1-01 3 19492801 19492801 A G KCNH8 Missense_Mutation p.Y577C 0.30 deleterious(0) probably_damaging(0.998) TCGA-C4-A0F1-01 3 20218129 20218129 C T SGOL1 Missense_Mutation p.E147K 0.18 tolerated(0.16) benign(0.006) TCGA-C4-A0F1-01 3 33038825 33038825 C A GLB1 Missense_Mutation p.W582C 0.31 deleterious(0) probably_damaging(0.996) TCGA-C4-A0F1-01 3 37035075 37035075 G A MLH1 Missense_Mutation p.E13K 0.25 deleterious(0) benign(0.418) TCGA-C4-A0F1-01 3 3887565 3887565 T A LRRN1 Missense_Mutation p.L414I 0.30 tolerated(0.41) benign(0.011) TCGA-C4-A0F1-01 3 42576579 42576579 G A VIPR1 Missense_Mutation p.V375I 0.28 tolerated(0.4) benign(0.125) TCGA-C4-A0F1-01 3 48698816 48698816 T A CELSR3 Missense_Mutation p.M418L 0.23 tolerated(0.09) probably_damaging(0.993) TCGA-C4-A0F1-01 3 48698817 48698817 C T CELSR3 Silent p.T417T 0.23 TCGA-C4-A0F1-01 3 48956327 48956327 C T ARIH2OS Missense_Mutation p.D86N 0.35 tolerated_low_confidence(0.27) possibly_damaging(0.741) TCGA-C4-A0F1-01 3 49166159 49166159 C G LAMB2 Missense_Mutation p.E609Q 0.31 tolerated(0.06) possibly_damaging(0.557) TCGA-C4-A0F1-01 4 110890162 110890162 G C EGF Missense_Mutation p.E537D 0.28 deleterious(0) probably_damaging(0.98) TCGA-C4-A0F1-01 4 114158306 114158306 A G ANK2 Missense_Mutation p.H216R 0.29 probably_damaging(1) TCGA-C4-A0F1-01 4 13602850 13602850 C T BOD1L1 Missense_Mutation p.E1892K 0.27 probably_damaging(0.929) TCGA-C4-A0F1-01 4 1389009 1389009 G T CRIPAK Missense_Mutation p.G237V 0.13 tolerated(0.19) probably_damaging(0.988) TCGA-C4-A0F1-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.18 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 4 15569099 15569099 C T CC2D2A Silent p.L1094L 0.21 TCGA-C4-A0F1-01 4 156723403 156723403 C T GUCY1B3 Intron 0.60 TCGA-C4-A0F1-01 4 2701583 2701583 G C FAM193A Missense_Mutation p.K937N 0.28 deleterious(0) probably_damaging(0.99) TCGA-C4-A0F1-01 4 38777082 38777082 C T TLR10 Missense_Mutation p.A44T 0.32 tolerated(0.18) benign(0.002) TCGA-C4-A0F1-01 4 55961077 55961077 T A KDR Missense_Mutation p.I955F 0.27 tolerated(0.12) benign(0.392) TCGA-C4-A0F1-01 4 55961105 55961105 G A KDR Silent p.F945F 0.30 TCGA-C4-A0F1-01 4 94693231 94693231 A G GRID2 Missense_Mutation p.D869G 0.22 deleterious(0) probably_damaging(0.926) TCGA-C4-A0F1-01 5 102526629 102526629 C T PPIP5K2 Missense_Mutation p.L1126F 0.31 deleterious_low_confidence(0.04) benign(0.234) TCGA-C4-A0F1-01 5 102537353 102537353 G C PPIP5K2 3'UTR 0.24 TCGA-C4-A0F1-01 5 153181955 153181955 G A GRIA1 Missense_Mutation p.V819M 0.29 deleterious(0) probably_damaging(1) TCGA-C4-A0F1-01 5 3601184 3601184 G T IRX1 3'UTR 0.26 TCGA-C4-A0F1-01 5 38407204 38407204 G A EGFLAM Missense_Mutation p.R368Q 0.28 tolerated(0.06) benign(0.426) TCGA-C4-A0F1-01 5 55247891 55247891 C G IL6ST Missense_Mutation p.G522A 0.34 deleterious(0.04) possibly_damaging(0.681) TCGA-C4-A0F1-01 5 82817190 82817190 G A VCAN Missense_Mutation p.R1022K 0.27 tolerated(0.12) benign(0.293) TCGA-C4-A0F1-01 5 90106172 90106172 G A GPR98 Missense_Mutation p.G5032E 0.30 probably_damaging(0.993) TCGA-C4-A0F1-01 5 94989768 94989768 G A RFESD Missense_Mutation p.M54I 0.23 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-C4-A0F1-01 6 119226948 119226948 G A ASF1A Silent p.E119E 0.30 TCGA-C4-A0F1-01 6 152650896 152650896 C G SYNE1 Missense_Mutation p.G4975A 0.25 benign(0.006) TCGA-C4-A0F1-01 6 167755005 167755005 G A TTLL2 Silent p.P539P 0.33 TCGA-C4-A0F1-01 6 169064768 169064768 G A SMOC2 Missense_Mutation p.A445T 0.26 tolerated_low_confidence(0.13) benign(0.001) TCGA-C4-A0F1-01 6 31727896 31727896 C A MSH5 Missense_Mutation p.T572N 0.32 deleterious(0.03) benign(0.037) TCGA-C4-A0F1-01 6 31838641 31838641 G A SLC44A4 Silent p.F295F 0.29 TCGA-C4-A0F1-01 6 3225895 3225895 G A TUBB2B Missense_Mutation p.T143M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-C4-A0F1-01 6 42977057 42977057 C A PPP2R5D Intron 0.19 TCGA-C4-A0F1-01 6 79727268 79727268 G A PHIP Missense_Mutation p.H343Y 0.30 deleterious(0) possibly_damaging(0.838) TCGA-C4-A0F1-01 6 88136336 88136336 G C C6ORF165 Missense_Mutation p.K311N 0.28 deleterious(0.05) possibly_damaging(0.578) TCGA-C4-A0F1-01 6 90468570 90468570 G A MDN1 Missense_Mutation p.S857F 0.24 benign(0.285) TCGA-C4-A0F1-01 7 100151098 100151098 C G AGFG2 Nonsense_Mutation p.S187* 0.24 TCGA-C4-A0F1-01 7 124404704 124404704 G T GPR37 Silent p.P109P 0.33 TCGA-C4-A0F1-01 7 127255253 127255253 G C PAX4 Intron 0.32 TCGA-C4-A0F1-01 7 134927560 134927560 C A STRA8 Missense_Mutation p.H96N 0.22 tolerated(0.09) benign(0.23) TCGA-C4-A0F1-01 7 139655334 139655334 G A TBXAS1 Missense_Mutation p.E253K 0.28 deleterious(0.02) benign(0.158) TCGA-C4-A0F1-01 7 143096402 143096402 C T EPHA1 Missense_Mutation p.E314K 0.33 tolerated(0.12) benign(0.002) TCGA-C4-A0F1-01 7 143096426 143096426 C T EPHA1 Missense_Mutation p.E306K 0.30 tolerated(0.09) benign(0.001) TCGA-C4-A0F1-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.29 deleterious(0) probably_damaging(0.991) TCGA-C4-A0F1-01 7 149512401 149512401 C T SSPO RNA 0.27 TCGA-C4-A0F1-01 7 151855998 151855998 C A KMT2C Nonsense_Mutation p.E3874* 0.26 TCGA-C4-A0F1-01 7 151860062 151860062 G A KMT2C Nonsense_Mutation p.Q3534* 0.33 TCGA-C4-A0F1-01 7 18975511 18975511 C G HDAC9 Silent p.L961L 0.32 TCGA-C4-A0F1-01 7 21945945 21945945 C A CDCA7L Nonsense_Mutation p.E295* 0.28 TCGA-C4-A0F1-01 7 5662766 5662766 C G RNF216 Missense_Mutation p.E833Q 0.27 tolerated(0.09) possibly_damaging(0.781) TCGA-C4-A0F1-01 7 5663694 5663694 C A RNF216 Missense_Mutation p.K815N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-C4-A0F1-01 7 5663714 5663714 C T RNF216 Missense_Mutation p.E809K 0.26 tolerated(0.06) benign(0.332) TCGA-C4-A0F1-01 7 76255311 76255314 ACTC - POMZP3 Intron 0.15 TCGA-C4-A0F1-01 7 77885323 77885323 C T MAGI2 Missense_Mutation p.V662I 0.28 deleterious(0) probably_damaging(0.997) TCGA-C4-A0F1-01 7 82580534 82580534 C - PCLO Frame_Shift_Del p.A3124Lfs*4 0.34 TCGA-C4-A0F1-01 7 99621928 99621928 G A ZKSCAN1 Missense_Mutation p.R193Q 0.27 tolerated(0.13) benign(0.001) TCGA-C4-A0F1-01 8 100403871 100403871 G A VPS13B Silent p.K1007K 0.14 TCGA-C4-A0F1-01 8 143436064 143436064 G A TSNARE1 Missense_Mutation p.R8C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-C4-A0F1-01 8 146033636 146033636 C T ZNF517 Silent p.L445L 0.46 TCGA-C4-A0F1-01 8 42177314 42177314 G T IKBKB Intron 0.44 TCGA-C4-A0F1-01 8 76465276 76465276 G A HNF4G Splice_Site p.X154_splice 0.22 TCGA-C4-A0F1-01 9 104170392 104170392 C G ZNF189 Missense_Mutation p.F114L 0.58 tolerated(0.66) possibly_damaging(0.827) TCGA-C4-A0F1-01 9 123620306 123620306 C T PHF19 Silent p.E553E 0.59 TCGA-C4-A0F1-01 9 139273744 139273744 G C SNAPC4 Silent p.L845L 0.41 TCGA-C4-A0F1-01 9 20720513 20720513 C T FOCAD Silent p.L89L 0.47 TCGA-C4-A0F1-01 9 35752111 35752111 C T RGP1 Silent p.L307L 0.59 TCGA-C4-A0F1-01 9 35752709 35752709 C G RGP1 Silent p.L338L 0.53 TCGA-C4-A0F1-01 X 47041369 47041369 C G RBM10 Silent p.T571T 0.58 TCGA-C4-A0F1-01 X 47045533 47045533 A T RBM10 Nonsense_Mutation p.K834* 0.50 TCGA-C4-A0F1-01 X 63413139 63413139 G A AMER1 Nonsense_Mutation p.Q10* 0.54 TCGA-C4-A0F1-01 X 70470410 70470410 C T ZMYM3 Silent p.R315R 0.65 TCGA-C4-A0F1-01 X 75650837 75650837 G C MAGEE1 Missense_Mutation p.L838F 0.42 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F6-01 10 26581833 26581833 T C GAD2 Silent p.P499P 0.29 TCGA-C4-A0F6-01 10 48382225 48382225 G C RBP3 Missense_Mutation p.L1142V 0.35 deleterious(0) possibly_damaging(0.694) TCGA-C4-A0F6-01 10 5488619 5488619 G A NET1 Intron 0.26 TCGA-C4-A0F6-01 10 7205753 7205753 G C SFMBT2 Missense_Mutation p.F888L 0.24 deleterious(0) probably_damaging(0.986) TCGA-C4-A0F6-01 10 95720060 95720060 G C PIPSL RNA 0.32 TCGA-C4-A0F6-01 10 96064271 96064271 G A PLCE1 Missense_Mutation p.E1831K 0.34 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 11 103908030 103908030 C G DDI1 Silent p.L160L 0.17 TCGA-C4-A0F6-01 11 106558469 106558469 C G GUCY1A2 Missense_Mutation p.E700Q 0.43 tolerated(0.33) benign(0.064) TCGA-C4-A0F6-01 11 124757704 124757704 G A ROBO4 Missense_Mutation p.R661W 0.51 deleterious(0.02) probably_damaging(0.937) TCGA-C4-A0F6-01 11 32956871 32956871 C G QSER1 Missense_Mutation p.S1227C 0.36 deleterious(0) possibly_damaging(0.847) TCGA-C4-A0F6-01 11 3845209 3845209 C T PGAP2 Missense_Mutation p.R149C 0.26 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F6-01 11 397293 397293 C T PKP3 Silent p.G264G 0.50 TCGA-C4-A0F6-01 11 56258184 56258184 G A OR5M8 Silent p.F221F 0.26 TCGA-C4-A0F6-01 11 56344512 56344512 C A OR5M10 Missense_Mutation p.R229L 0.53 deleterious(0) benign(0.319) TCGA-C4-A0F6-01 11 58477181 58477181 C T GLYAT 3'UTR 0.29 TCGA-C4-A0F6-01 11 66619974 66619974 G C PC Silent p.L587L 0.28 TCGA-C4-A0F6-01 11 67075644 67075644 G T SSH3 Splice_Site p.X296_splice 0.29 TCGA-C4-A0F6-01 11 7079046 7079046 A C NLRP14 Missense_Mutation p.L810F 0.35 deleterious(0.02) possibly_damaging(0.542) TCGA-C4-A0F6-01 11 71698134 71698134 C T RNF121 Silent p.L161L 0.37 TCGA-C4-A0F6-01 11 76257009 76257009 G C C11orf30 Missense_Mutation p.D1148H 0.26 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-C4-A0F6-01 11 86518961 86518961 C T PRSS23 Silent p.A92A 0.38 TCGA-C4-A0F6-01 11 94731995 94731995 G A KDM4D Missense_Mutation p.E487K 0.31 tolerated_low_confidence(0.5) benign(0.003) TCGA-C4-A0F6-01 12 109702924 109702924 G C ACACB Missense_Mutation p.E2318Q 0.16 tolerated(0.18) benign(0.021) TCGA-C4-A0F6-01 12 110720594 110720594 A G ATP2A2 Missense_Mutation p.I71M 0.25 deleterious(0) probably_damaging(0.996) TCGA-C4-A0F6-01 12 111291361 111291361 G T CCDC63 Missense_Mutation p.Q54H 0.23 deleterious(0.04) benign(0.046) TCGA-C4-A0F6-01 12 111655742 111655742 G T CUX2 Splice_Site p.X74_splice 0.46 TCGA-C4-A0F6-01 12 112477050 112477050 C G NAA25 Missense_Mutation p.E878Q 0.31 tolerated(0.05) benign(0.017) TCGA-C4-A0F6-01 12 112694164 112694164 C G HECTD4 Missense_Mutation p.R950T 0.20 possibly_damaging(0.777) TCGA-C4-A0F6-01 12 118517226 118517226 C G VSIG10 Missense_Mutation p.D284H 0.14 tolerated(0.53) benign(0.081) TCGA-C4-A0F6-01 12 120966898 120966898 C T COQ5 Missense_Mutation p.G16E 0.52 tolerated_low_confidence(0.11) benign(0.424) TCGA-C4-A0F6-01 12 124298176 124298176 G A DNAH10 Missense_Mutation p.E1086K 0.28 benign(0.004) TCGA-C4-A0F6-01 12 124957593 124957593 G A NCOR2 Missense_Mutation p.R166W 0.21 unknown(0) TCGA-C4-A0F6-01 12 129559559 129559559 T G TMEM132D Missense_Mutation p.T721P 0.24 deleterious(0) benign(0.192) TCGA-C4-A0F6-01 12 14976569 14976569 A G C12orf60 Missense_Mutation p.M234V 0.40 tolerated(0.18) benign(0.013) TCGA-C4-A0F6-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.52 TCGA-C4-A0F6-01 12 48381056 48381056 G T COL2A1 Missense_Mutation p.S421Y 0.24 unknown(0) TCGA-C4-A0F6-01 12 48390378 48390378 C G COL2A1 Missense_Mutation p.D188H 0.23 unknown(0) TCGA-C4-A0F6-01 12 48739131 48739131 G C ZNF641 Missense_Mutation p.L149V 0.17 deleterious(0) benign(0.13) TCGA-C4-A0F6-01 12 49416552 49416552 G A KMT2D Nonsense_Mutation p.Q5387* 0.55 TCGA-C4-A0F6-01 12 50383894 50383894 T C RACGAP1 3'UTR 0.44 TCGA-C4-A0F6-01 12 51065079 51065079 C T DIP2B Nonsense_Mutation p.Q180* 0.54 TCGA-C4-A0F6-01 12 51451849 51451849 T C LETMD1 Missense_Mutation p.I330T 0.21 deleterious(0.01) benign(0.015) TCGA-C4-A0F6-01 12 53241751 53241751 C A KRT78 Missense_Mutation p.R180L 0.25 deleterious(0) probably_damaging(0.976) TCGA-C4-A0F6-01 12 56142751 56142751 C T GDF11 Missense_Mutation p.P276L 0.17 tolerated(0.18) benign(0.023) TCGA-C4-A0F6-01 12 58021630 58021630 C T B4GALNT1 Silent p.A385A 0.27 TCGA-C4-A0F6-01 12 68595841 68595841 C G IL26 Missense_Mutation p.R129T 0.21 tolerated(0.12) benign(0.412) TCGA-C4-A0F6-01 12 69042512 69042512 A G RAP1B Missense_Mutation p.E3G 0.95 deleterious(0) possibly_damaging(0.728) TCGA-C4-A0F6-01 12 70932750 70932750 G C PTPRB Silent p.L1941L 0.35 TCGA-C4-A0F6-01 12 71526475 71526475 C G TSPAN8 Missense_Mutation p.E192Q 0.21 tolerated(1) benign(0.015) TCGA-C4-A0F6-01 12 72057372 72057372 G C ZFC3H1 Missense_Mutation p.P7A 0.50 tolerated_low_confidence(0.11) benign(0) TCGA-C4-A0F6-01 12 72058255 72058255 G C THAP2 5'UTR 0.45 TCGA-C4-A0F6-01 12 93100450 93100450 G C C12orf74 Missense_Mutation p.D15H 0.22 deleterious(0.01) possibly_damaging(0.724) TCGA-C4-A0F6-01 12 93100519 93100519 G C C12orf74 Missense_Mutation p.D38H 0.26 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 13 113490489 113490489 C G ATP11A Intron 0.27 TCGA-C4-A0F6-01 13 20315736 20315736 C G PSPC1 Missense_Mutation p.E341Q 0.20 tolerated(0.05) possibly_damaging(0.749) TCGA-C4-A0F6-01 13 32802752 32802752 A T FRY Missense_Mutation p.D1789V 0.42 deleterious(0.02) benign(0.141) TCGA-C4-A0F6-01 13 53282807 53282807 C T LECT1 Missense_Mutation p.R218K 0.22 tolerated(0.14) benign(0.033) TCGA-C4-A0F6-01 13 67801771 67801771 C G PCDH9 Missense_Mutation p.G268R 0.52 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 13 73636411 73636412 - G KLF5 Frame_Shift_Ins p.H227Pfs*27 0.22 TCGA-C4-A0F6-01 14 100595958 100595958 G A EVL Missense_Mutation p.R259Q 0.68 deleterious(0.01) probably_damaging(0.997) TCGA-C4-A0F6-01 14 23885425 23885425 C T MYH7 Missense_Mutation p.E1581K 0.12 deleterious(0.02) probably_damaging(0.98) TCGA-C4-A0F6-01 14 51225101 51225101 C G NIN Missense_Mutation p.E883Q 0.72 deleterious(0.02) probably_damaging(0.962) TCGA-C4-A0F6-01 14 60620715 60620715 C T DHRS7 Missense_Mutation p.E119K 0.15 tolerated(0.21) benign(0.117) TCGA-C4-A0F6-01 14 63246455 63246455 C G KCNH5 Silent p.L670L 0.53 TCGA-C4-A0F6-01 14 77492242 77492242 C G IRF2BPL Missense_Mutation p.D632H 0.25 deleterious(0) unknown(0) TCGA-C4-A0F6-01 15 28211933 28211933 G A OCA2 Silent p.F513F 0.51 TCGA-C4-A0F6-01 15 29385275 29385275 C T APBA2 Intron 0.17 TCGA-C4-A0F6-01 15 30011184 30011184 G A TJP1 Silent p.L1054L 0.22 TCGA-C4-A0F6-01 15 31776455 31776455 C T OTUD7A Missense_Mutation p.R608Q 0.36 tolerated_low_confidence(0.84) benign(0.001) TCGA-C4-A0F6-01 15 59179725 59179725 A T SLTM Missense_Mutation p.V797D 0.28 tolerated(0.53) probably_damaging(0.926) TCGA-C4-A0F6-01 15 68504196 68504196 G A CLN6 Silent p.I101I 0.23 TCGA-C4-A0F6-01 15 74180837 74180837 G C TBC1D21 Missense_Mutation p.E321Q 0.12 tolerated(1) possibly_damaging(0.652) TCGA-C4-A0F6-01 15 90622959 90622959 C T ZNF710 Silent p.F631F 0.23 TCGA-C4-A0F6-01 15 91421501 91421501 C T FURIN Silent p.L269L 0.32 TCGA-C4-A0F6-01 16 17353054 17353054 C G XYLT1 Missense_Mutation p.R235T 0.21 tolerated_low_confidence(0.3) benign(0.004) TCGA-C4-A0F6-01 16 24815594 24815594 A G TNRC6A Missense_Mutation p.Q1264R 0.48 tolerated(0.9) possibly_damaging(0.787) TCGA-C4-A0F6-01 16 24988548 24988548 G A ARHGAP17 Silent p.A62A 0.15 TCGA-C4-A0F6-01 16 28137114 28137114 C G XPO6 Silent p.L554L 0.29 TCGA-C4-A0F6-01 16 347183 347183 C A AXIN1 Nonsense_Mutation p.E610* 0.22 TCGA-C4-A0F6-01 16 58019836 58019836 C A TEPP Missense_Mutation p.S286Y 0.27 deleterious(0) probably_damaging(0.975) TCGA-C4-A0F6-01 16 67691914 67691914 C T ACD Missense_Mutation p.G480E 0.23 tolerated(0.36) benign(0.01) TCGA-C4-A0F6-01 16 69199280 69199280 G C CIRH1A Missense_Mutation p.D562H 0.15 tolerated(0.06) possibly_damaging(0.642) TCGA-C4-A0F6-01 16 731323 731323 G C STUB1 Missense_Mutation p.D111H 0.27 deleterious(0) probably_damaging(0.985) TCGA-C4-A0F6-01 16 732373 732373 C T STUB1 Missense_Mutation p.H266Y 0.47 deleterious(0.03) possibly_damaging(0.767) TCGA-C4-A0F6-01 17 10400658 10400658 C G MYH1 Missense_Mutation p.E1493Q 0.22 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 17 10400727 10400727 C G MYH1 Missense_Mutation p.E1470Q 0.17 deleterious(0.03) possibly_damaging(0.816) TCGA-C4-A0F6-01 17 27254016 27254016 C G PHF12 Missense_Mutation p.R105P 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-C4-A0F6-01 17 40936120 40936120 C T WNK4 Silent p.I319I 0.24 TCGA-C4-A0F6-01 17 4863785 4863785 G A SPAG7 Nonsense_Mutation p.Q71* 0.47 TCGA-C4-A0F6-01 17 49713340 49713340 A G CA10 Missense_Mutation p.I222T 0.25 tolerated(0.08) benign(0.084) TCGA-C4-A0F6-01 17 65119237 65119237 C G HELZ Missense_Mutation p.R1160T 0.28 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-C4-A0F6-01 17 65340841 65340841 C A PSMD12 Nonsense_Mutation p.E322* 0.19 TCGA-C4-A0F6-01 17 66933153 66933153 A G ABCA8 Silent p.Y135Y 0.30 TCGA-C4-A0F6-01 17 71197988 71197988 C T COG1 Silent p.L674L 0.24 TCGA-C4-A0F6-01 17 78327615 78327615 C G RNF213 Intron 0.44 TCGA-C4-A0F6-01 17 79637252 79637252 C T CCDC137 Intron 0.64 TCGA-C4-A0F6-01 17 9559744 9559744 C T USP43 Nonsense_Mutation p.Q177* 0.17 TCGA-C4-A0F6-01 18 29101087 29101087 G A DSG2 Missense_Mutation p.R135K 0.24 tolerated(1) benign(0.002) TCGA-C4-A0F6-01 18 42530401 42530401 G A SETBP1 Missense_Mutation p.E366K 0.27 tolerated(0.19) probably_damaging(0.994) TCGA-C4-A0F6-01 18 56390314 56390314 G T MALT1 Missense_Mutation p.M351I 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-C4-A0F6-01 19 12826060 12826060 G A TNPO2 Silent p.I215I 0.29 TCGA-C4-A0F6-01 19 1357029 1357029 T G MUM1 Missense_Mutation p.S28A 0.32 tolerated(0.07) benign(0.316) TCGA-C4-A0F6-01 19 2130435 2130435 C T AP3D1 Silent p.L188L 0.29 TCGA-C4-A0F6-01 19 2216303 2216303 G A DOT1L Silent p.K649K 0.30 TCGA-C4-A0F6-01 19 2216319 2216319 G T DOT1L Nonsense_Mutation p.E655* 0.29 TCGA-C4-A0F6-01 19 2254207 2254207 C G JSRP1 Missense_Mutation p.E81Q 0.27 deleterious(0.01) benign(0.005) TCGA-C4-A0F6-01 19 37917250 37917250 C T ZNF569 Missense_Mutation p.D16N 0.33 tolerated(0.11) benign(0.006) TCGA-C4-A0F6-01 19 40900472 40900472 C G PRX Missense_Mutation p.E1263Q 0.25 tolerated(0.22) possibly_damaging(0.607) TCGA-C4-A0F6-01 19 40901150 40901150 C G PRX Missense_Mutation p.E1037Q 0.13 tolerated(0.06) possibly_damaging(0.607) TCGA-C4-A0F6-01 19 40901173 40901173 C G PRX Missense_Mutation p.R1029T 0.14 deleterious(0.01) benign(0.402) TCGA-C4-A0F6-01 19 40901264 40901264 C G PRX Missense_Mutation p.D999H 0.18 deleterious(0) probably_damaging(0.934) TCGA-C4-A0F6-01 19 40901420 40901420 C T PRX Missense_Mutation p.E947K 0.17 deleterious(0.01) possibly_damaging(0.486) TCGA-C4-A0F6-01 19 40901603 40901603 C G PRX Missense_Mutation p.E886Q 0.18 tolerated(0.57) benign(0.003) TCGA-C4-A0F6-01 19 42082676 42082676 G A CEACAM21 Missense_Mutation p.G17E 0.13 tolerated(0.4) probably_damaging(0.919) TCGA-C4-A0F6-01 19 4690967 4690967 C G DPP9 Missense_Mutation p.E507Q 0.22 tolerated(0.28) possibly_damaging(0.45) TCGA-C4-A0F6-01 19 48547228 48547228 C T CABP5 5'UTR 0.14 TCGA-C4-A0F6-01 19 49971800 49971800 C T ALDH16A1 Silent p.L701L 0.05 TCGA-C4-A0F6-01 19 51582812 51582812 G A KLK14 Silent p.P136P 0.16 TCGA-C4-A0F6-01 19 53741588 53741588 C T ZNF677 Missense_Mutation p.R131K 0.27 tolerated(0.2) benign(0.026) TCGA-C4-A0F6-01 19 54403944 54403944 G A PRKCG Missense_Mutation p.V506I 0.62 tolerated(1) benign(0.006) TCGA-C4-A0F6-01 19 54656169 54656169 C A CNOT3 Silent p.I570I 0.15 TCGA-C4-A0F6-01 19 54656937 54656937 C G CNOT3 Intron 0.19 TCGA-C4-A0F6-01 19 5591776 5591776 C G SAFB2 Missense_Mutation p.D793H 0.19 deleterious(0.01) benign(0.216) TCGA-C4-A0F6-01 19 58232870 58232870 C T ZNF671 Missense_Mutation p.G195E 0.21 tolerated(0.92) benign(0.194) TCGA-C4-A0F6-01 19 8587680 8587680 C G MYO1F Missense_Mutation p.R963T 0.33 tolerated(0.27) benign(0.04) TCGA-C4-A0F6-01 19 8670203 8670203 G T ADAMTS10 Missense_Mutation p.F43L 0.43 tolerated(0.21) benign(0.389) TCGA-C4-A0F6-01 1 117944812 117944812 G C MAN1A2 Missense_Mutation p.E103Q 0.55 tolerated(0.13) benign(0.029) TCGA-C4-A0F6-01 1 118166678 118166678 G C FAM46C 3'UTR 0.93 TCGA-C4-A0F6-01 1 152188199 152188199 G C HRNR Missense_Mutation p.S1969C 0.05 unknown(0) TCGA-C4-A0F6-01 1 158516978 158516978 G A OR6Y1 Silent p.L306L 0.24 TCGA-C4-A0F6-01 1 161643336 161643336 G A FCGR2B Intron 0.75 TCGA-C4-A0F6-01 1 173795914 173795914 C A DARS2 Missense_Mutation p.Q73K 0.55 deleterious(0.01) benign(0.261) TCGA-C4-A0F6-01 1 177245564 177245564 G A BRINP2 Missense_Mutation p.E336K 0.48 deleterious(0.04) benign(0.046) TCGA-C4-A0F6-01 1 197390534 197390534 C T CRB1 Nonsense_Mutation p.R526* 0.50 TCGA-C4-A0F6-01 1 205306715 205306715 G C KLHDC8A Missense_Mutation p.Q289E 0.23 tolerated(0.38) benign(0.071) TCGA-C4-A0F6-01 1 36379798 36379798 C G AGO1 Missense_Mutation p.Q586E 0.77 tolerated(0.16) probably_damaging(0.965) TCGA-C4-A0F6-01 1 43895747 43895747 C T SZT2 Silent p.F1401F 0.74 TCGA-C4-A0F6-01 1 44069084 44069084 C T PTPRF Intron 0.13 TCGA-C4-A0F6-01 1 70897873 70897873 C G CTH Missense_Mutation p.Q278E 0.75 tolerated(0.56) benign(0.018) TCGA-C4-A0F6-01 1 74671227 74671227 C A FPGT Nonsense_Mutation p.S499* 0.45 TCGA-C4-A0F6-01 20 13463978 13463978 C G TASP1 Missense_Mutation p.G294A 0.27 deleterious(0.01) probably_damaging(1) TCGA-C4-A0F6-01 20 1433180 1433180 C T NSFL1C Missense_Mutation p.G250E 0.30 tolerated(1) benign(0.096) TCGA-C4-A0F6-01 20 37353313 37353313 C G SLC32A1 5'UTR 0.12 TCGA-C4-A0F6-01 20 44841804 44841804 C G CDH22 Missense_Mutation p.E288Q 0.45 deleterious(0) possibly_damaging(0.854) TCGA-C4-A0F6-01 20 45362599 45362599 G A SLC2A10 3'UTR 0.50 TCGA-C4-A0F6-01 20 49626376 49626376 C T KCNG1 Missense_Mutation p.R167H 0.15 tolerated(0.28) probably_damaging(0.999) TCGA-C4-A0F6-01 20 52645197 52645197 T A BCAS1 Missense_Mutation p.T153S 0.45 tolerated(0.12) benign(0.056) TCGA-C4-A0F6-01 21 28214229 28214229 G A ADAMTS1 Silent p.S386S 0.30 TCGA-C4-A0F6-01 21 43767668 43767668 G A TFF2 Silent p.C101C 0.15 TCGA-C4-A0F6-01 22 26286747 26286747 G A MYO18B Missense_Mutation p.A1447T 0.73 tolerated(0.27) possibly_damaging(0.903) TCGA-C4-A0F6-01 22 30748978 30748978 G C SF3A1 Silent p.V49V 0.14 TCGA-C4-A0F6-01 22 38061912 38061912 C T PDXP 3'UTR 0.23 TCGA-C4-A0F6-01 22 46792543 46792543 G A CELSR1 Silent p.C1934C 0.21 TCGA-C4-A0F6-01 2 105858505 105858505 G A GPR45 Missense_Mutation p.A64T 0.70 deleterious(0.02) benign(0.008) TCGA-C4-A0F6-01 2 107460193 107460193 G C ST6GAL2 Missense_Mutation p.P81A 0.27 benign(0.005) TCGA-C4-A0F6-01 2 1241711 1241711 C T SNTG2 Silent p.L257L 0.38 TCGA-C4-A0F6-01 2 131985869 131985869 C G POTEE Missense_Mutation p.L324V 0.17 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-C4-A0F6-01 2 138771674 138771674 C G HNMT Missense_Mutation p.L285V 0.14 deleterious(0) possibly_damaging(0.586) TCGA-C4-A0F6-01 2 141598563 141598563 G A LRP1B Silent p.L1680L 0.42 TCGA-C4-A0F6-01 2 1520688 1520688 C T TPO Missense_Mutation p.S851F 0.30 deleterious(0) probably_damaging(0.987) TCGA-C4-A0F6-01 2 163302755 163302755 C G KCNH7 Missense_Mutation p.E443Q 0.40 tolerated(0.35) benign(0.007) TCGA-C4-A0F6-01 2 178095734 178095734 T G NFE2L2 Missense_Mutation p.K533Q 0.49 tolerated(0.09) possibly_damaging(0.789) TCGA-C4-A0F6-01 2 179482509 179482509 T C TTN Missense_Mutation p.I15857V 0.20 TCGA-C4-A0F6-01 2 202141587 202141587 G A CASP8 Missense_Mutation p.R292Q 0.55 deleterious(0.02) probably_damaging(0.994) TCGA-C4-A0F6-01 2 219501002 219501002 G A PLCD4 Missense_Mutation p.R690Q 0.48 tolerated(1) benign(0.057) TCGA-C4-A0F6-01 2 219857870 219857884 GCCGGGCCCGGCGCG - CRYBA2 In_Frame_Del p.A6_A10del 0.35 TCGA-C4-A0F6-01 2 241702670 241702670 G A KIF1A Missense_Mutation p.T621M 0.35 tolerated(0.05) possibly_damaging(0.525) TCGA-C4-A0F6-01 2 27505677 27505677 C T TRIM54 Silent p.C26C 0.16 TCGA-C4-A0F6-01 2 54159084 54159084 G A PSME4 Nonsense_Mutation p.Q402* 0.44 TCGA-C4-A0F6-01 2 74596222 74596222 G A DCTN1 Intron 0.39 TCGA-C4-A0F6-01 2 79254983 79254983 G A REG3G Missense_Mutation p.M128I 0.20 deleterious(0.04) benign(0.004) TCGA-C4-A0F6-01 2 89100631 89100631 C T ANKRD36BP2 RNA 0.18 TCGA-C4-A0F6-01 2 97361264 97361264 C T FER1L5 RNA 0.44 TCGA-C4-A0F6-01 3 129195257 129195257 C G IFT122 Missense_Mutation p.L357V 0.52 deleterious(0) probably_damaging(0.985) TCGA-C4-A0F6-01 3 151163672 151163672 G C IGSF10 Missense_Mutation p.S1366C 0.23 tolerated(0.16) possibly_damaging(0.613) TCGA-C4-A0F6-01 3 160942825 160942825 C A NMD3 Nonsense_Mutation p.S51* 0.31 TCGA-C4-A0F6-01 3 195245954 195245954 C A PPP1R2 Missense_Mutation p.R144S 0.46 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 3 197678160 197678160 G A RPL35A Missense_Mutation p.A48T 0.26 tolerated(0.06) benign(0.425) TCGA-C4-A0F6-01 3 38039653 38039653 G A VILL Silent p.Q279Q 0.24 TCGA-C4-A0F6-01 3 45811793 45811793 C T SLC6A20 Missense_Mutation p.V336M 0.17 tolerated(0.55) benign(0.038) TCGA-C4-A0F6-01 3 47752241 47752241 C T SMARCC1 Missense_Mutation p.D284N 0.27 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 3 49757948 49757948 G C RNF123 Missense_Mutation p.E1169Q 0.19 tolerated(0.32) benign(0.011) TCGA-C4-A0F6-01 3 49758894 49758894 G A RNF123 3'UTR 0.21 TCGA-C4-A0F6-01 3 52446872 52446872 G A PHF7 5'UTR 0.13 TCGA-C4-A0F6-01 3 53766966 53766966 C G CACNA1D Missense_Mutation p.F886L 0.49 tolerated(0.1) probably_damaging(0.99) TCGA-C4-A0F6-01 3 66293723 66293723 C T SLC25A26 Missense_Mutation p.S96F 0.26 deleterious(0) benign(0.137) TCGA-C4-A0F6-01 3 6903515 6903515 C T GRM7 Missense_Mutation p.P147L 0.22 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F6-01 4 104103931 104103931 A C CENPE Silent p.L317L 0.16 TCGA-C4-A0F6-01 4 114899684 114899684 G C ARSJ Missense_Mutation p.L103V 0.36 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F6-01 4 119203155 119203155 G T PRSS12 Missense_Mutation p.S855Y 0.20 tolerated(0.14) possibly_damaging(0.6) TCGA-C4-A0F6-01 4 151771938 151771938 C T LRBA Missense_Mutation p.M1314I 0.16 tolerated(0.33) benign(0.01) TCGA-C4-A0F6-01 4 153271277 153271277 C G FBXW7 Splice_Site p.X168_splice 0.57 TCGA-C4-A0F6-01 4 154625550 154625550 C G TLR2 Silent p.L497L 0.15 TCGA-C4-A0F6-01 4 158142864 158142864 G A GRIA2 Missense_Mutation p.R45Q 0.22 deleterious(0) probably_damaging(0.95) TCGA-C4-A0F6-01 4 16900009 16900009 C T LDB2 Missense_Mutation p.E34K 0.46 deleterious(0) probably_damaging(0.941) TCGA-C4-A0F6-01 4 1733001 1733001 G C TACC3 Missense_Mutation p.E522Q 0.34 tolerated(0.05) possibly_damaging(0.758) TCGA-C4-A0F6-01 4 186425667 186425667 C G PDLIM3 Missense_Mutation p.Q289H 0.20 deleterious(0.04) possibly_damaging(0.713) TCGA-C4-A0F6-01 4 24801248 24801248 C T SOD3 Silent p.I35I 0.25 TCGA-C4-A0F6-01 4 55139810 55139810 G A PDGFRA Missense_Mutation p.A491T 0.16 tolerated(0.59) benign(0.001) TCGA-C4-A0F6-01 4 57250456 57250456 G A AASDH Nonsense_Mutation p.Q4* 0.32 TCGA-C4-A0F6-01 4 57302438 57302438 C T PAICS 5'UTR 0.17 TCGA-C4-A0F6-01 4 6114594 6114594 G C JAKMIP1 5'UTR 0.46 TCGA-C4-A0F6-01 4 656971 656971 G A PDE6B Missense_Mutation p.E639K 0.33 deleterious(0.02) benign(0.142) TCGA-C4-A0F6-01 4 68928271 68928271 C T TMPRSS11F Intron 0.18 TCGA-C4-A0F6-01 4 74285275 74285275 G A ALB Silent p.L568L 0.20 TCGA-C4-A0F6-01 4 76570708 76570708 C G G3BP2 Missense_Mutation p.R452T 0.17 tolerated_low_confidence(0.11) probably_damaging(0.972) TCGA-C4-A0F6-01 4 76781888 76781888 C T PPEF2 Missense_Mutation p.D732N 0.26 tolerated_low_confidence(0.41) benign(0.001) TCGA-C4-A0F6-01 4 87735669 87735669 G C PTPN13 Missense_Mutation p.E2480Q 0.33 tolerated(0.09) unknown(0) TCGA-C4-A0F6-01 4 89199513 89199513 T C PPM1K Missense_Mutation p.I75V 0.46 tolerated(0.16) benign(0.175) TCGA-C4-A0F6-01 5 140215250 140215250 C T PCDHA7 Missense_Mutation p.R428W 0.29 deleterious_low_confidence(0.04) benign(0.06) TCGA-C4-A0F6-01 5 140263524 140263524 C T PCDHA13 Silent p.D557D 0.62 TCGA-C4-A0F6-01 5 159344642 159344642 G C ADRA1B Missense_Mutation p.E244Q 0.75 deleterious(0.03) probably_damaging(0.992) TCGA-C4-A0F6-01 5 178310385 178310385 C T ZNF354B Missense_Mutation p.S311F 0.32 deleterious(0) probably_damaging(0.998) TCGA-C4-A0F6-01 5 33614349 33614349 C T ADAMTS12 Missense_Mutation p.G841R 0.32 deleterious(0) probably_damaging(0.993) TCGA-C4-A0F6-01 5 45262237 45262237 G A HCN1 Missense_Mutation p.T820M 0.47 deleterious_low_confidence(0.01) benign(0.062) TCGA-C4-A0F6-01 5 6378552 6378552 G A MED10 Silent p.F15F 0.62 TCGA-C4-A0F6-01 5 89948215 89948215 T C GPR98 Missense_Mutation p.F1157L 0.17 possibly_damaging(0.483) TCGA-C4-A0F6-01 6 132270329 132270329 C T CTGF 3'UTR 0.27 TCGA-C4-A0F6-01 6 136599241 136599241 G C BCLAF1 Missense_Mutation p.Q260E 0.12 tolerated(0.58) benign(0.059) TCGA-C4-A0F6-01 6 160174506 160174506 A G WTAP Missense_Mutation p.K156R 0.09 tolerated(0.74) benign(0.019) TCGA-C4-A0F6-01 6 27420988 27420988 G A ZNF184 Missense_Mutation p.S117F 0.26 tolerated(0.71) benign(0.172) TCGA-C4-A0F6-01 6 29639314 29639314 G A MOG 3'UTR 0.12 TCGA-C4-A0F6-01 6 43593965 43593965 C G GTPBP2 Missense_Mutation p.E132D 0.23 tolerated(0.31) benign(0.006) TCGA-C4-A0F6-01 6 46644165 46644165 G C SLC25A27 Missense_Mutation p.E316Q 0.37 tolerated(0.18) benign(0.004) TCGA-C4-A0F6-01 6 52268632 52268632 C T PAQR8 Silent p.V207V 0.48 TCGA-C4-A0F6-01 7 100148019 100148022 GTTT - AGFG2 Frame_Shift_Del p.V106Afs*15 0.59 TCGA-C4-A0F6-01 7 107423661 107423661 C G SLC26A3 Missense_Mutation p.D370H 0.46 deleterious(0) probably_damaging(0.976) TCGA-C4-A0F6-01 7 111508111 111508111 C T DOCK4 Missense_Mutation p.E737K 0.17 deleterious(0.03) possibly_damaging(0.901) TCGA-C4-A0F6-01 7 128492642 128492651 CAGGTGATGA - FLNC Splice_Site p.X1948_splice 0.12 TCGA-C4-A0F6-01 7 144245674 144245674 C T TPK1 Missense_Mutation p.D175N 0.18 tolerated(0.52) benign(0.011) TCGA-C4-A0F6-01 7 37960368 37960368 C T EPDR1 5'UTR 0.69 TCGA-C4-A0F6-01 7 44796036 44796036 C T ZMIZ2 Silent p.F21F 0.63 TCGA-C4-A0F6-01 7 5352441 5352441 G A TNRC18 Missense_Mutation p.S2694F 0.26 unknown(0) TCGA-C4-A0F6-01 7 75203167 75203167 G C HIP1 Missense_Mutation p.T215R 0.05 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 7 80374329 80374329 G A SEMA3C Missense_Mutation p.R713W 0.18 tolerated(0.37) possibly_damaging(0.798) TCGA-C4-A0F6-01 7 92462586 92462586 C T CDK6 Missense_Mutation p.E18K 0.55 tolerated(0.77) probably_damaging(0.994) TCGA-C4-A0F6-01 7 92732940 92732940 C G SAMD9 Missense_Mutation p.R824P 0.17 tolerated(0.13) benign(0.072) TCGA-C4-A0F6-01 8 100833675 100833675 G C VPS13B Missense_Mutation p.E3075Q 0.13 tolerated(0.15) benign(0.403) TCGA-C4-A0F6-01 8 103335546 103335546 C T UBR5 Missense_Mutation p.E593K 0.12 tolerated(0.7) benign(0.444) TCGA-C4-A0F6-01 8 118811817 118811817 T C EXT1 3'UTR 0.63 TCGA-C4-A0F6-01 8 133906095 133906095 G A TG Silent p.P974P 0.16 TCGA-C4-A0F6-01 8 28633422 28633422 C T INTS9 Missense_Mutation p.E473K 0.30 deleterious(0.03) benign(0.309) TCGA-C4-A0F6-01 8 614506 614506 C A ERICH1 3'UTR 0.36 TCGA-C4-A0F6-01 9 100888882 100888882 C G CORO2A Silent p.L465L 0.29 TCGA-C4-A0F6-01 9 113213596 113213596 G A SVEP1 Missense_Mutation p.R1292C 0.65 possibly_damaging(0.773) TCGA-C4-A0F6-01 9 131721315 131721315 G C NUP188 Missense_Mutation p.D163H 0.37 deleterious(0.03) possibly_damaging(0.587) TCGA-C4-A0F6-01 9 132658259 132658259 C T FNBP1 Silent p.T568T 0.30 TCGA-C4-A0F6-01 9 137300844 137300844 G A RXRA Silent p.V163V 0.66 TCGA-C4-A0F6-01 9 139391498 139391498 G C NOTCH1 Silent p.L2231L 0.42 TCGA-C4-A0F6-01 9 139945421 139945421 T C ENTPD2 Missense_Mutation p.Y236C 0.23 deleterious(0) probably_damaging(1) TCGA-C4-A0F6-01 9 2652927 2652927 C G VLDLR Missense_Mutation p.S855C 0.45 deleterious(0) possibly_damaging(0.806) TCGA-C4-A0F6-01 9 77431805 77431805 C G TRPM6 Intron 0.31 TCGA-C4-A0F6-01 9 98690414 98690414 C G ERCC6L2 Silent p.L540L 0.37 TCGA-C4-A0F6-01 X 100513302 100513302 C T DRP2 Missense_Mutation p.L799F 0.42 deleterious(0) possibly_damaging(0.892) TCGA-C4-A0F6-01 X 114141690 114141690 C T HTR2C Silent p.I363I 0.47 TCGA-C4-A0F6-01 X 120183007 120183007 C T GLUD2 Missense_Mutation p.T490M 0.50 deleterious(0.03) probably_damaging(0.941) TCGA-C4-A0F6-01 X 129059059 129059059 C G UTP14A Missense_Mutation p.P546R 0.50 tolerated(0.11) possibly_damaging(0.616) TCGA-C4-A0F6-01 X 13727527 13727527 G A RAB9A 3'UTR 0.50 TCGA-C4-A0F6-01 X 140995585 140995585 C T MAGEC1 Nonsense_Mutation p.Q799* 0.37 TCGA-C4-A0F6-01 X 144337274 144337274 G A SPANXN1 Silent p.A53A 0.41 TCGA-C4-A0F6-01 X 153713943 153713943 G A UBL4A Missense_Mutation p.R137W 0.17 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F6-01 X 31645811 31645811 T G DMD Missense_Mutation p.K2732N 0.16 benign(0.001) TCGA-C4-A0F6-01 X 44108098 44108098 C T EFHC2 Missense_Mutation p.G308D 0.44 deleterious(0.02) benign(0.167) TCGA-C4-A0F6-01 X 44938512 44938512 C T KDM6A Silent p.I1020I 0.33 TCGA-C4-A0F6-01 X 53603879 53603879 T C HUWE1 Silent p.A1955A 0.41 TCGA-C4-A0F6-01 X 54143003 54143003 G C FAM120C Missense_Mutation p.L763V 0.14 deleterious(0) probably_damaging(0.997) TCGA-C4-A0F6-01 X 67940785 67940785 C T STARD8 Missense_Mutation p.S690F 0.46 deleterious(0) probably_damaging(0.994) TCGA-C4-A0F6-01 X 70345221 70345221 G T MED12 Missense_Mutation p.E749D 0.65 possibly_damaging(0.75) TCGA-C4-A0F6-01 X 70608124 70608124 G A TAF1 Missense_Mutation p.R842Q 0.56 tolerated(0.12) probably_damaging(0.949) TCGA-C4-A0F6-01 X 78427144 78427144 G A GPR174 Missense_Mutation p.D214N 0.25 tolerated(0.12) benign(0.006) TCGA-C4-A0F6-01 X 8507728 8507728 C T KAL1 Missense_Mutation p.E476K 0.16 tolerated(0.1) benign(0.008) TCGA-C4-A0F6-01 X 91137942 91137942 G A PCDH11X Intron 0.26 TCGA-C4-A0F7-01 10 105133276 105133277 - A TAF5 Nonsense_Mutation p.Y241* 0.29 TCGA-C4-A0F7-01 11 111614171 111614171 C T PPP2R1B Missense_Mutation p.V495I 0.07 tolerated(1) benign(0.005) TCGA-C4-A0F7-01 11 121039497 121039497 G C TECTA Silent p.T1954T 0.26 TCGA-C4-A0F7-01 11 607297 607297 G A PHRF1 Missense_Mutation p.R613Q 0.24 tolerated(1) benign(0.057) TCGA-C4-A0F7-01 11 64035013 64035013 G A PLCB3 Silent p.E1230E 0.64 TCGA-C4-A0F7-01 11 64525784 64525784 G A PYGM Silent p.A154A 0.75 TCGA-C4-A0F7-01 11 94231644 94231644 T C ANKRD49 Silent p.Y222Y 0.38 TCGA-C4-A0F7-01 12 104326676 104326676 G A HSP90B1 Missense_Mutation p.E123K 0.44 tolerated(1) benign(0.018) TCGA-C4-A0F7-01 12 121426830 121426830 C T HNF1A Missense_Mutation p.A174V 0.41 tolerated(0.22) benign(0.167) TCGA-C4-A0F7-01 12 49425220 49425220 G - KMT2D Frame_Shift_Del p.P4423Hfs*9 0.24 TCGA-C4-A0F7-01 12 49434781 49434785 GCACA - KMT2D Frame_Shift_Del p.V2257* 0.40 TCGA-C4-A0F7-01 12 50616335 50616335 T C LIMA1 Intron 0.45 TCGA-C4-A0F7-01 12 52962081 52962081 G A KRT74 Silent p.G409G 0.25 TCGA-C4-A0F7-01 12 9006743 9006743 T A A2ML1 Silent p.I870I 0.23 TCGA-C4-A0F7-01 13 50129739 50129739 C T RCBTB1 Missense_Mutation p.R172Q 0.31 tolerated(0.12) probably_damaging(0.934) TCGA-C4-A0F7-01 14 78184464 78184464 G A SNW1 Silent p.H526H 0.35 TCGA-C4-A0F7-01 16 226701 226701 C G HBA1 5'UTR 0.37 TCGA-C4-A0F7-01 16 28913653 28913653 C T ATP2A1 Missense_Mutation p.P824S 0.07 tolerated(0.74) probably_damaging(0.999) TCGA-C4-A0F7-01 16 53679568 53679568 C T RPGRIP1L Silent p.L884L 0.31 TCGA-C4-A0F7-01 17 27899299 27899299 C G TP53I13 Nonsense_Mutation p.S218* 0.81 TCGA-C4-A0F7-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.89 deleterious(0) probably_damaging(1) TCGA-C4-A0F7-01 17 80059594 80059594 C G FASN 5'Flank 0.81 TCGA-C4-A0F7-01 18 42530725 42530725 G A SETBP1 Missense_Mutation p.E474K 0.71 deleterious(0.02) benign(0.217) TCGA-C4-A0F7-01 19 11486191 11486191 G A SWSAP1 Silent p.K63K 0.25 TCGA-C4-A0F7-01 19 17440975 17440975 G T ANO8 Missense_Mutation p.A411D 0.24 tolerated(1) benign(0.008) TCGA-C4-A0F7-01 19 35770065 35770065 G A USF2 Intron 0.25 TCGA-C4-A0F7-01 19 37210842 37210842 G T ZNF567 Missense_Mutation p.A375S 0.22 tolerated(1) probably_damaging(0.987) TCGA-C4-A0F7-01 19 4499523 4499523 G A HDGFRP2 Silent p.E537E 0.15 TCGA-C4-A0F7-01 19 49055556 49055556 A T SULT2B1 Missense_Mutation p.Y16F 0.32 tolerated_low_confidence(0.16) benign(0.002) TCGA-C4-A0F7-01 19 51453127 51453127 C T KLK5 Missense_Mutation p.A107T 0.77 deleterious(0) probably_damaging(0.995) TCGA-C4-A0F7-01 19 55758320 55758320 G A PPP6R1 Missense_Mutation p.P51L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-C4-A0F7-01 19 5783026 5783026 G A PRR22 Missense_Mutation p.P411L 0.38 tolerated(0.33) benign(0.001) TCGA-C4-A0F7-01 19 6981182 6981182 C A EMR4P RNA 0.14 TCGA-C4-A0F7-01 1 14107286 14107286 C A PRDM2 Missense_Mutation p.S999Y 0.58 unknown(0) TCGA-C4-A0F7-01 1 152279046 152279046 G T FLG Missense_Mutation p.D2772E 0.23 benign(0.255) TCGA-C4-A0F7-01 1 153932939 153932939 G A SLC39A1 Missense_Mutation p.R204W 0.51 deleterious(0.05) benign(0.017) TCGA-C4-A0F7-01 1 165370612 165370612 C T RXRG Missense_Mutation p.R427H 0.20 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F7-01 1 172017754 172017754 C T DNM3 Missense_Mutation p.T400I 0.17 deleterious(0.04) possibly_damaging(0.864) TCGA-C4-A0F7-01 1 175355398 175355398 G A TNR Missense_Mutation p.S516L 0.17 deleterious(0) probably_damaging(0.974) TCGA-C4-A0F7-01 1 176525340 176525340 A C PAPPA2 5'UTR 0.22 TCGA-C4-A0F7-01 1 176525345 176525345 A T PAPPA2 5'UTR 0.21 TCGA-C4-A0F7-01 1 19475090 19475090 T A UBR4 Missense_Mutation p.E2487D 0.53 benign(0.039) TCGA-C4-A0F7-01 1 200968596 200968596 T C KIF21B Splice_Site p.X590_splice 0.73 TCGA-C4-A0F7-01 1 226340215 226340215 C T ACBD3 Missense_Mutation p.R399Q 0.37 deleterious(0.03) possibly_damaging(0.896) TCGA-C4-A0F7-01 1 226340229 226340229 C T ACBD3 Silent p.V394V 0.36 TCGA-C4-A0F7-01 1 34076828 34076828 G C CSMD2 Missense_Mutation p.N2012K 0.35 deleterious(0) probably_damaging(0.938) TCGA-C4-A0F7-01 1 41101622 41101622 C T RIMS3 Missense_Mutation p.D109N 0.63 tolerated_low_confidence(0.07) benign(0.347) TCGA-C4-A0F7-01 1 48764299 48764299 A T SPATA6 3'UTR 0.15 TCGA-C4-A0F7-01 1 53986418 53986418 C T GLIS1 Missense_Mutation p.E364K 0.37 deleterious(0.03) probably_damaging(0.986) TCGA-C4-A0F7-01 1 92185658 92185658 G A TGFBR3 Missense_Mutation p.P402L 0.54 tolerated(0.06) benign(0.057) TCGA-C4-A0F7-01 20 35443917 35443917 C A SOGA1 Missense_Mutation p.R643L 0.31 deleterious(0.04) benign(0.229) TCGA-C4-A0F7-01 21 34805103 34805103 C A IFNGR2 Missense_Mutation p.F268L 0.34 tolerated(0.29) benign(0.063) TCGA-C4-A0F7-01 21 46951334 46951334 G A SLC19A1 Silent p.N306N 0.24 TCGA-C4-A0F7-01 22 32334024 32334024 A G C22orf24 Missense_Mutation p.L10P 0.26 deleterious_low_confidence(0.01) benign(0.086) TCGA-C4-A0F7-01 22 37414345 37414345 G A TST Silent p.S143S 0.24 TCGA-C4-A0F7-01 22 39910417 39910417 T A MIEF1 3'UTR 0.27 TCGA-C4-A0F7-01 22 42972584 42972584 G A SERHL2 3'Flank 0.29 TCGA-C4-A0F7-01 2 167162315 167162315 C T SCN9A Missense_Mutation p.V195I 0.27 tolerated(0.09) probably_damaging(1) TCGA-C4-A0F7-01 2 196865506 196865506 G A DNAH7 Silent p.I425I 0.50 TCGA-C4-A0F7-01 2 1983502 1983502 C T MYT1L Silent p.G16G 0.11 TCGA-C4-A0F7-01 2 213872344 213872344 C A IKZF2 Missense_Mutation p.V441F 0.12 tolerated(0.69) benign(0.165) TCGA-C4-A0F7-01 2 39417450 39417453 TGTT - CDKL4 Frame_Shift_Del p.R215Sfs*2 0.23 TCGA-C4-A0F7-01 2 79971689 79971689 A T CTNNA2 Silent p.V93V 0.55 TCGA-C4-A0F7-01 2 8822191 8822191 G A ID2 5'UTR 0.61 TCGA-C4-A0F7-01 2 96078765 96078765 C G FAHD2A 3'UTR 0.60 TCGA-C4-A0F7-01 3 112054803 112054803 C A CD200 Missense_Mutation p.T9K 0.18 possibly_damaging(0.895) TCGA-C4-A0F7-01 3 11301151 11301151 G A HRH1 Missense_Mutation p.R143Q 0.19 deleterious(0.05) possibly_damaging(0.7) TCGA-C4-A0F7-01 3 118865565 118865565 C G C3orf30 Missense_Mutation p.Q177E 0.34 deleterious(0.01) possibly_damaging(0.764) TCGA-C4-A0F7-01 3 151463373 151463374 GA T AADACL2 Frame_Shift_Del p.E170* 0.13 TCGA-C4-A0F7-01 3 164786928 164786928 G C SI Missense_Mutation p.P104R 0.32 deleterious(0) probably_damaging(1) TCGA-C4-A0F7-01 3 186501413 186501413 C T EIF4A2 Missense_Mutation p.S5F 0.29 deleterious_low_confidence(0.05) benign(0.221) TCGA-C4-A0F7-01 3 53213624 53213624 G A PRKCD Silent p.P49P 0.30 TCGA-C4-A0F7-01 3 63985136 63985136 G A ATXN7 Silent p.T913T 0.38 TCGA-C4-A0F7-01 4 100479211 100479211 A G TRMT10A Silent p.L115L 0.39 TCGA-C4-A0F7-01 4 115597250 115597250 G T UGT8 Missense_Mutation p.A478S 0.37 tolerated(0.06) benign(0.379) TCGA-C4-A0F7-01 4 3425321 3425321 G A RGS12 Missense_Mutation p.V1063M 0.25 deleterious(0) probably_damaging(1) TCGA-C4-A0F7-01 4 68964665 68964665 A G TMPRSS11F Silent p.L35L 0.18 TCGA-C4-A0F7-01 4 79429990 79429990 C T FRAS1 Missense_Mutation p.P3204S 0.39 benign(0.164) TCGA-C4-A0F7-01 5 6633926 6633926 C T SRD5A1 Silent p.L79L 0.09 TCGA-C4-A0F7-01 5 68737477 68737477 C G MARVELD2 Missense_Mutation p.S558C 0.41 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-C4-A0F7-01 6 109980580 109980580 G A AK9 Nonsense_Mutation p.Q161* 0.46 TCGA-C4-A0F7-01 6 142691909 142691909 G C GPR126 Missense_Mutation p.A350P 0.06 tolerated(0.15) probably_damaging(0.98) TCGA-C4-A0F7-01 6 149700178 149700178 C T TAB2 Missense_Mutation p.T376M 0.28 deleterious(0.01) possibly_damaging(0.564) TCGA-C4-A0F7-01 6 17777555 17777555 T C KIF13A Missense_Mutation p.K1375E 0.22 deleterious(0.01) benign(0.297) TCGA-C4-A0F7-01 6 26124400 26124400 G C HIST1H2AC 5'Flank 0.19 TCGA-C4-A0F7-01 6 43156294 43156294 G A CUL9 Missense_Mutation p.R674H 0.53 deleterious(0.04) benign(0.083) TCGA-C4-A0F7-01 6 44216418 44216418 C T HSP90AB1 Nonsense_Mutation p.Q18* 0.29 TCGA-C4-A0F7-01 6 83963391 83963391 G T ME1 Missense_Mutation p.N257K 0.19 tolerated(0.31) benign(0.004) TCGA-C4-A0F7-01 7 100187841 100187841 C G FBXO24 Silent p.A99A 0.67 TCGA-C4-A0F7-01 7 100200011 100200011 C T PCOLCE 5'UTR 0.07 TCGA-C4-A0F7-01 7 100491616 100491616 G A ACHE Missense_Mutation p.P80S 0.16 deleterious(0.03) possibly_damaging(0.618) TCGA-C4-A0F7-01 7 102087006 102087006 G A ORAI2 Missense_Mutation p.R91Q 0.23 tolerated(0.37) benign(0.002) TCGA-C4-A0F7-01 7 104681357 104681357 G A KMT2E 5'UTR 0.21 TCGA-C4-A0F7-01 7 18067430 18067430 C T PRPS1L1 5'UTR 0.24 TCGA-C4-A0F7-01 7 21826264 21826264 C G DNAH11 Missense_Mutation p.A3214G 0.08 benign(0.018) TCGA-C4-A0F7-01 7 43484652 43484652 G A HECW1 Silent p.T627T 0.32 TCGA-C4-A0F7-01 7 4794201 4794201 C T FOXK1 Silent p.A286A 0.14 TCGA-C4-A0F7-01 7 93633654 93633655 - C BET1 5'UTR 0.12 TCGA-C4-A0F7-01 7 99774879 99774879 C G GPC2 5'UTR 0.70 TCGA-C4-A0F7-01 8 128429170 128429170 C T POU5F1B Silent p.G353G 0.43 TCGA-C4-A0F7-01 8 139734291 139734291 C T COL22A1 Silent p.P763P 0.28 TCGA-C4-A0F7-01 8 145512927 145512927 G C BOP1 Missense_Mutation p.S53C 0.62 deleterious(0) possibly_damaging(0.7) TCGA-C4-A0F7-01 8 28998127 28998127 C A KIF13B Missense_Mutation p.R781L 0.19 tolerated(0.08) benign(0.236) TCGA-C4-A0F7-01 8 38095117 38095117 G A DDHD2 Missense_Mutation p.R158K 0.21 tolerated(0.12) benign(0.018) TCGA-C4-A0F7-01 8 73480335 73480335 A G KCNB2 Silent p.E122E 0.23 TCGA-C4-A0F7-01 8 77776411 77776411 T C ZFHX4 Silent p.V3487V 0.19 TCGA-C4-A0F7-01 9 135205856 135205856 C A SETX Missense_Mutation p.D377Y 0.66 deleterious(0) probably_damaging(0.999) TCGA-C4-A0F7-01 X 153592464 153592464 C T FLNA Missense_Mutation p.V736M 0.78 tolerated(0.17) benign(0.364) TCGA-C4-A0F7-01 X 22291957 22291957 G A ZNF645 Silent p.A283A 0.76 TCGA-CF-A1HR-01 10 105882813 105882813 C T SFR1 Missense_Mutation p.S35L 0.31 tolerated(0.1) benign(0.006) TCGA-CF-A1HR-01 10 115355468 115355468 C T NRAP Missense_Mutation p.D1484N 0.06 tolerated(0.6) benign(0.184) TCGA-CF-A1HR-01 10 12071355 12071355 T C UPF2 Silent p.L178L 0.27 TCGA-CF-A1HR-01 10 120879939 120879939 A G FAM45A Missense_Mutation p.I190V 0.06 tolerated(0.3) benign(0.006) TCGA-CF-A1HR-01 10 121431904 121431904 C T BAG3 Silent p.N215N 0.23 TCGA-CF-A1HR-01 10 129905874 129905874 G A MKI67 Silent p.L1410L 0.12 TCGA-CF-A1HR-01 10 31138355 31138355 C A ZNF438 Missense_Mutation p.D327Y 0.06 deleterious(0.01) possibly_damaging(0.832) TCGA-CF-A1HR-01 10 45907638 45907638 G A ALOX5 Splice_Site p.X144_splice 0.26 TCGA-CF-A1HR-01 10 50857602 50857602 C T CHAT Silent p.L477L 0.05 TCGA-CF-A1HR-01 10 5248277 5248277 A T AKR1C4 Missense_Mutation p.I163F 0.08 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 10 55600095 55600095 C G PCDH15 Missense_Mutation p.R1323T 0.27 deleterious(0.04) benign(0.443) TCGA-CF-A1HR-01 10 68040318 68040318 C T CTNNA3 Silent p.L598L 0.07 TCGA-CF-A1HR-01 10 74619017 74619017 C G MCU Silent p.L101L 0.05 TCGA-CF-A1HR-01 10 76744917 76744917 A G KAT6B Missense_Mutation p.Y818C 0.13 probably_damaging(0.999) TCGA-CF-A1HR-01 10 81929059 81929059 C T ANXA11 Missense_Mutation p.G76E 0.25 tolerated(0.12) unknown(0) TCGA-CF-A1HR-01 11 103086469 103086469 A C DYNC2H1 Missense_Mutation p.N2905T 0.12 benign(0.049) TCGA-CF-A1HR-01 11 104915124 104915124 G A CARD16 Missense_Mutation p.S90L 0.27 deleterious(0.01) benign(0.348) TCGA-CF-A1HR-01 11 118374132 118374132 G C KMT2A Missense_Mutation p.E2509Q 0.11 probably_damaging(0.934) TCGA-CF-A1HR-01 11 12248645 12248645 C G MICAL2 Silent p.L654L 0.17 TCGA-CF-A1HR-01 11 123810416 123810416 C A OR4D5 Missense_Mutation p.F31L 0.11 tolerated(0.25) probably_damaging(0.952) TCGA-CF-A1HR-01 11 123900608 123900608 C T OR10G8 Silent p.F93F 0.07 TCGA-CF-A1HR-01 11 128843971 128843971 G A ARHGAP32 Intron 0.09 TCGA-CF-A1HR-01 11 14502617 14502617 T C COPB1 Silent p.V328V 0.12 TCGA-CF-A1HR-01 11 18361114 18361114 G A GTF2H1 Missense_Mutation p.D173N 0.09 tolerated(0.05) possibly_damaging(0.797) TCGA-CF-A1HR-01 11 27384539 27384539 G C CCDC34 Missense_Mutation p.S68C 0.07 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 11 28232683 28232683 C G METTL15 Silent p.L115L 0.05 TCGA-CF-A1HR-01 11 32622318 32622318 G C EIF3M Missense_Mutation p.D295H 0.10 tolerated(0.06) benign(0.128) TCGA-CF-A1HR-01 11 60235949 60235949 C T MS4A1 3'UTR 0.11 TCGA-CF-A1HR-01 11 60671325 60671325 C T PRPF19 Missense_Mutation p.E10K 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-CF-A1HR-01 11 61291406 61291406 C T SYT7 Missense_Mutation p.R342Q 0.06 tolerated(0.06) benign(0.418) TCGA-CF-A1HR-01 11 66082774 66082774 G A CD248 Silent p.L575L 0.14 TCGA-CF-A1HR-01 11 66113603 66113603 C T B3GNT1 Missense_Mutation p.E389K 0.35 deleterious(0.01) probably_damaging(0.914) TCGA-CF-A1HR-01 11 67410068 67410068 G A ACY3 3'UTR 0.27 TCGA-CF-A1HR-01 11 70318907 70318907 G A SHANK2 3'UTR 0.23 TCGA-CF-A1HR-01 11 70319029 70319029 C T SHANK2 Missense_Mutation p.R1833Q 0.28 deleterious(0) possibly_damaging(0.553) TCGA-CF-A1HR-01 11 85447612 85447612 G A SYTL2 Missense_Mutation p.S172L 0.05 tolerated(0.75) benign(0.001) TCGA-CF-A1HR-01 11 86048472 86048472 C G C11orf73 Missense_Mutation p.S107C 0.15 tolerated(0.11) possibly_damaging(0.705) TCGA-CF-A1HR-01 11 92533128 92533128 G C FAT3 Missense_Mutation p.E2317Q 0.11 possibly_damaging(0.816) TCGA-CF-A1HR-01 12 106632982 106632982 G A CKAP4 Silent p.V543V 0.18 TCGA-CF-A1HR-01 12 109182345 109182345 C T SSH1 Missense_Mutation p.E857K 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-CF-A1HR-01 12 117923470 117923470 G C KSR2 Missense_Mutation p.S749C 0.16 deleterious(0) probably_damaging(0.964) TCGA-CF-A1HR-01 12 131484985 131484985 G C GPR133 Missense_Mutation p.E342Q 0.12 tolerated(0.23) benign(0.299) TCGA-CF-A1HR-01 12 22015985 22015985 C T ABCC9 Silent p.R747R 0.06 TCGA-CF-A1HR-01 12 43826585 43826585 G T ADAMTS20 Nonsense_Mutation p.S917* 0.05 TCGA-CF-A1HR-01 12 4796341 4796341 A T NDUFA9 3'UTR 0.25 TCGA-CF-A1HR-01 12 56995427 56995427 G C BAZ2A Nonsense_Mutation p.S1327* 0.30 TCGA-CF-A1HR-01 12 6680126 6680126 C T CHD4 Missense_Mutation p.R1877Q 0.13 tolerated(0.07) probably_damaging(0.986) TCGA-CF-A1HR-01 12 6686986 6686986 C G CHD4 Missense_Mutation p.E1776Q 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-CF-A1HR-01 12 6755646 6755646 C T ACRBP Intron 0.22 TCGA-CF-A1HR-01 12 95604045 95604045 C T FGD6 Missense_Mutation p.E339K 0.08 tolerated_low_confidence(0.38) benign(0.014) TCGA-CF-A1HR-01 13 101944589 101944589 C T NALCN Missense_Mutation p.A310T 0.19 deleterious(0) probably_damaging(0.995) TCGA-CF-A1HR-01 13 103419691 103419691 C A TEX30 Nonsense_Mutation p.E146* 0.04 TCGA-CF-A1HR-01 13 20048070 20048070 G C TPTE2 Missense_Mutation p.R126G 0.10 deleterious(0) probably_damaging(0.98) TCGA-CF-A1HR-01 13 30106971 30106971 G C SLC7A1 Silent p.L173L 0.07 TCGA-CF-A1HR-01 13 31543165 31543165 C T TEX26 Nonsense_Mutation p.Q264* 0.05 TCGA-CF-A1HR-01 13 32914961 32914961 C T BRCA2 Nonsense_Mutation p.Q2157* 0.28 TCGA-CF-A1HR-01 13 41910844 41910844 C T NAA16 Silent p.C322C 0.07 TCGA-CF-A1HR-01 13 50275904 50275904 G A KPNA3 3'UTR 0.07 TCGA-CF-A1HR-01 14 105411240 105411240 G C AHNAK2 Silent p.L3516L 0.08 TCGA-CF-A1HR-01 14 21993519 21993519 C T SALL2 Missense_Mutation p.E115K 0.06 tolerated(0.19) benign(0.242) TCGA-CF-A1HR-01 14 30105594 30105594 C A PRKD1 Missense_Mutation p.M364I 0.11 tolerated(0.19) benign(0) TCGA-CF-A1HR-01 14 32560932 32560932 C G ARHGAP5 Missense_Mutation p.L353V 0.09 tolerated(0.1) probably_damaging(0.998) TCGA-CF-A1HR-01 14 35228028 35228028 C T BAZ1A Missense_Mutation p.R1423Q 0.08 deleterious(0) probably_damaging(0.99) TCGA-CF-A1HR-01 14 36230213 36230213 C A RALGAPA1 Splice_Site p.X124_splice 0.12 TCGA-CF-A1HR-01 14 50246473 50246473 G C KLHDC2 Missense_Mutation p.R241T 0.10 deleterious(0.02) probably_damaging(0.927) TCGA-CF-A1HR-01 14 50583166 50583166 G A VCPKMT Silent p.S35S 0.18 TCGA-CF-A1HR-01 14 55448271 55448271 G A WDHD1 Missense_Mutation p.P684S 0.08 tolerated(0.05) benign(0.054) TCGA-CF-A1HR-01 14 55467688 55467688 G A WDHD1 Missense_Mutation p.S239F 0.10 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 14 65234536 65234536 C G SPTB Missense_Mutation p.E2022Q 0.17 deleterious(0.01) possibly_damaging(0.618) TCGA-CF-A1HR-01 14 72985157 72985157 C G RGS6 Missense_Mutation p.P397R 0.13 deleterious(0.04) possibly_damaging(0.753) TCGA-CF-A1HR-01 14 74360609 74360609 C A ZNF410 Nonsense_Mutation p.S48* 0.36 TCGA-CF-A1HR-01 14 93081784 93081784 G C RIN3 Missense_Mutation p.E134Q 0.06 deleterious(0.01) unknown(0) TCGA-CF-A1HR-01 15 23889947 23889947 G C MAGEL2 Silent p.L378L 0.16 TCGA-CF-A1HR-01 15 25463621 25463621 G A SNORD115-27 5'Flank 0.34 TCGA-CF-A1HR-01 15 32917399 32917399 C A ARHGAP11A Missense_Mutation p.Q224K 0.43 deleterious(0) possibly_damaging(0.605) TCGA-CF-A1HR-01 15 33359049 33359049 G C FMN1 Missense_Mutation p.S346C 0.10 deleterious(0) unknown(0) TCGA-CF-A1HR-01 15 34649515 34649515 G A NUTM1 Silent p.K1074K 0.07 TCGA-CF-A1HR-01 15 38591726 38591726 G A SPRED1 Missense_Mutation p.G62E 0.07 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 15 41625174 41625174 G C NUSAP1 Missense_Mutation p.E7Q 0.20 tolerated(0.11) probably_damaging(0.997) TCGA-CF-A1HR-01 15 41805071 41805071 C G LTK Missense_Mutation p.E65Q 0.06 tolerated_low_confidence(0.08) benign(0.009) TCGA-CF-A1HR-01 15 41961828 41961828 C G MGA Missense_Mutation p.Q246E 0.48 deleterious(0) possibly_damaging(0.851) TCGA-CF-A1HR-01 15 43025297 43025297 G A CDAN1 Silent p.I485I 0.10 TCGA-CF-A1HR-01 15 43025301 43025301 C T CDAN1 Missense_Mutation p.R484K 0.09 tolerated(0.62) benign(0.002) TCGA-CF-A1HR-01 15 44695105 44695105 G C CASC4 Missense_Mutation p.E365Q 0.09 deleterious(0) probably_damaging(0.987) TCGA-CF-A1HR-01 15 49917332 49917332 G C DTWD1 5'UTR 0.09 TCGA-CF-A1HR-01 15 51988109 51988109 C G SCG3 Missense_Mutation p.I302M 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CF-A1HR-01 15 65891286 65891286 C G VWA9 Missense_Mutation p.D120H 0.08 deleterious(0.02) benign(0.016) TCGA-CF-A1HR-01 15 65983838 65983838 C T DENND4A Missense_Mutation p.E1031K 0.65 tolerated(0.88) benign(0.001) TCGA-CF-A1HR-01 15 74912488 74912488 G A CLK3 Silent p.E245E 0.41 TCGA-CF-A1HR-01 15 84287050 84287050 C G SH3GL3 3'UTR 0.36 TCGA-CF-A1HR-01 15 89873444 89873444 C T POLG Silent p.P241P 0.15 TCGA-CF-A1HR-01 15 99759146 99759146 C G TTC23 Missense_Mutation p.E138Q 0.08 tolerated(0.09) possibly_damaging(0.832) TCGA-CF-A1HR-01 16 1391337 1391337 C T BAIAP3 Missense_Mutation p.S228L 0.23 deleterious(0.01) possibly_damaging(0.662) TCGA-CF-A1HR-01 16 23640969 23640969 C T PALB2 Missense_Mutation p.V836I 0.16 tolerated(0.74) benign(0.002) TCGA-CF-A1HR-01 16 2570828 2570828 G A AMDHD2 Missense_Mutation p.E48K 0.36 tolerated(0.06) probably_damaging(0.944) TCGA-CF-A1HR-01 16 28878108 28878108 G A SH2B1 Silent p.L231L 0.24 TCGA-CF-A1HR-01 16 4016190 4016190 C G ADCY9 Missense_Mutation p.L1216F 0.07 deleterious(0) probably_damaging(0.997) TCGA-CF-A1HR-01 16 48264436 48264436 G C ABCC11 Missense_Mutation p.P50A 0.12 tolerated(0.08) benign(0.002) TCGA-CF-A1HR-01 16 49671947 49671947 G A ZNF423 Silent p.P372P 0.19 TCGA-CF-A1HR-01 16 50100305 50100305 G A HEATR3 Missense_Mutation p.E56K 0.30 deleterious(0.05) benign(0.373) TCGA-CF-A1HR-01 16 57065331 57065331 C T NLRC5 Silent p.I811I 0.07 TCGA-CF-A1HR-01 16 67909846 67909846 A T EDC4 Splice_Site p.X28_splice 0.26 TCGA-CF-A1HR-01 16 77859262 77859262 C T VAT1L Silent p.F161F 0.09 TCGA-CF-A1HR-01 16 81249935 81249935 G A PKD1L2 Silent p.D126D 0.25 TCGA-CF-A1HR-01 16 89254631 89254631 G A CDH15 Missense_Mutation p.D306N 0.12 tolerated(0.53) benign(0.009) TCGA-CF-A1HR-01 17 10432249 10432249 C T MYH2 Missense_Mutation p.E1168K 0.08 deleterious(0.01) benign(0.211) TCGA-CF-A1HR-01 17 1582371 1582371 G A PRPF8 Silent p.L513L 0.24 TCGA-CF-A1HR-01 17 17699982 17699982 C G RAI1 Silent p.V1240V 0.14 TCGA-CF-A1HR-01 17 17700179 17700179 C G RAI1 Missense_Mutation p.S1306C 0.16 deleterious(0) possibly_damaging(0.867) TCGA-CF-A1HR-01 17 17700285 17700285 C G RAI1 Silent p.L1341L 0.21 TCGA-CF-A1HR-01 17 17700331 17700331 C A RAI1 Missense_Mutation p.L1357M 0.16 deleterious(0.03) possibly_damaging(0.534) TCGA-CF-A1HR-01 17 17700911 17700911 C T RAI1 Missense_Mutation p.S1550F 0.13 deleterious(0.02) benign(0.24) TCGA-CF-A1HR-01 17 17700914 17700914 C T RAI1 Missense_Mutation p.S1551L 0.13 deleterious(0.01) benign(0.368) TCGA-CF-A1HR-01 17 17701368 17701368 C T RAI1 Silent p.L1702L 0.12 TCGA-CF-A1HR-01 17 25621403 25621403 A G WSB1 5'UTR 0.23 TCGA-CF-A1HR-01 17 26820718 26820718 C T SLC13A2 Silent p.F385F 0.04 TCGA-CF-A1HR-01 17 27000447 27000447 G A SUPT6H Missense_Mutation p.E10K 0.15 deleterious_low_confidence(0) unknown(0) TCGA-CF-A1HR-01 17 27421806 27421806 C T MYO18A Silent p.Q1524Q 0.03 TCGA-CF-A1HR-01 17 29227537 29227537 A G TEFM Missense_Mutation p.I180T 0.12 deleterious(0.02) possibly_damaging(0.642) TCGA-CF-A1HR-01 17 29576080 29576080 C G NF1 Missense_Mutation p.I1351M 0.08 tolerated(0.14) probably_damaging(0.991) TCGA-CF-A1HR-01 17 35512649 35512649 G A ACACA Silent p.L1801L 0.12 TCGA-CF-A1HR-01 17 36288269 36288269 G A TBC1D3F Missense_Mutation p.E119K 0.03 tolerated(1) probably_damaging(0.963) TCGA-CF-A1HR-01 17 3629671 3629671 G C GSG2 3'UTR 0.24 TCGA-CF-A1HR-01 17 37046755 37046755 C T LASP1 Nonsense_Mutation p.Q83* 0.17 TCGA-CF-A1HR-01 17 38857538 38857538 C G KRT24 Missense_Mutation p.E237Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-CF-A1HR-01 17 39262231 39262231 C A KRTAP4-9 Silent p.S197S 0.50 TCGA-CF-A1HR-01 17 40011443 40011443 C G KLHL11 Missense_Mutation p.D226H 0.21 deleterious(0.05) possibly_damaging(0.795) TCGA-CF-A1HR-01 17 40271680 40271680 C G KAT2A Missense_Mutation p.Q252H 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-CF-A1HR-01 17 43585469 43585469 C T LRRC37A4P 3'Flank 0.07 TCGA-CF-A1HR-01 17 46926617 46926617 G A CALCOCO2 Missense_Mutation p.E165K 0.24 tolerated(0.18) benign(0.042) TCGA-CF-A1HR-01 17 47780327 47780327 G C SLC35B1 Missense_Mutation p.S270C 0.06 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 17 48445522 48445522 G C MRPL27 Silent p.L126L 0.27 TCGA-CF-A1HR-01 17 49374347 49374347 C G UTP18 Missense_Mutation p.F556L 0.08 deleterious(0) possibly_damaging(0.835) TCGA-CF-A1HR-01 17 56349051 56349051 G A MPO Silent p.I665I 0.11 TCGA-CF-A1HR-01 17 56350157 56350157 C G MPO Missense_Mutation p.D582H 0.05 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 17 56620137 56620137 C G C17orf47 Missense_Mutation p.E471Q 0.06 deleterious(0) benign(0.026) TCGA-CF-A1HR-01 17 58286164 58286164 T C USP32 Missense_Mutation p.N875S 0.10 deleterious(0) probably_damaging(0.983) TCGA-CF-A1HR-01 17 73922925 73922925 T C FBF1 Missense_Mutation p.Y156C 0.27 deleterious(0) possibly_damaging(0.54) TCGA-CF-A1HR-01 17 74307507 74307507 G A PRPSAP1 3'UTR 0.21 TCGA-CF-A1HR-01 17 74307742 74307742 G A PRPSAP1 Silent p.L347L 0.16 TCGA-CF-A1HR-01 17 78343329 78343329 C T RNF213 Silent p.F4061F 0.25 TCGA-CF-A1HR-01 17 78343399 78343399 G A RNF213 Missense_Mutation p.E4085K 0.23 benign(0.079) TCGA-CF-A1HR-01 17 80439027 80439027 C T NARF Nonsense_Mutation p.Q237* 0.07 TCGA-CF-A1HR-01 18 12702511 12702511 G A CEP76 Nonsense_Mutation p.Q13* 0.19 TCGA-CF-A1HR-01 18 33738801 33738801 G T ELP2 Missense_Mutation p.D555Y 0.21 tolerated(0.13) benign(0.024) TCGA-CF-A1HR-01 18 43495477 43495477 T A EPG5 Missense_Mutation p.Q1231L 0.23 deleterious(0.04) possibly_damaging(0.888) TCGA-CF-A1HR-01 18 44559494 44559494 C T TCEB3B Silent p.L714L 0.27 TCGA-CF-A1HR-01 18 44589673 44589673 C T KATNAL2 Silent p.L151L 0.06 TCGA-CF-A1HR-01 18 50592482 50592482 G A DCC Missense_Mutation p.E403K 0.11 deleterious(0.01) possibly_damaging(0.876) TCGA-CF-A1HR-01 18 74587572 74587572 C T ZNF236 Silent p.F262F 0.07 TCGA-CF-A1HR-01 19 17305659 17305659 C G MYO9B Silent p.V1141V 0.12 TCGA-CF-A1HR-01 19 17440962 17440962 C T ANO8 Silent p.K415K 0.08 TCGA-CF-A1HR-01 19 20117297 20117297 C T ZNF682 Silent p.E338E 0.17 TCGA-CF-A1HR-01 19 23159739 23159739 T A ZNF728 Missense_Mutation p.N134Y 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-CF-A1HR-01 19 24270011 24270011 G A ZNF254 5'UTR 0.40 TCGA-CF-A1HR-01 19 2737188 2737188 G C SLC39A3 Missense_Mutation p.S23C 0.09 tolerated(0.05) benign(0.025) TCGA-CF-A1HR-01 19 33359415 33359415 C T SLC7A9 Missense_Mutation p.R9Q 0.12 tolerated(0.14) benign(0.085) TCGA-CF-A1HR-01 19 3781668 3781668 C T MATK Missense_Mutation p.G228S 0.07 tolerated(0.09) benign(0.381) TCGA-CF-A1HR-01 19 38028585 38028585 G C ZNF793 Missense_Mutation p.R342T 0.05 tolerated(0.33) possibly_damaging(0.87) TCGA-CF-A1HR-01 19 39217737 39217737 C T ACTN4 Silent p.F777F 0.08 TCGA-CF-A1HR-01 19 44169603 44169603 C T PLAUR Missense_Mutation p.E59K 0.06 tolerated(0.18) benign(0.001) TCGA-CF-A1HR-01 19 44896514 44896514 G A ZNF285 Silent p.L44L 0.08 TCGA-CF-A1HR-01 19 47761620 47761620 G C CCDC9 5'UTR 0.09 TCGA-CF-A1HR-01 19 504758 504758 G - MADCAM1 Frame_Shift_Del p.G315Vfs*45 0.22 TCGA-CF-A1HR-01 19 53770061 53770061 C G VN1R4 Missense_Mutation p.M286I 0.05 tolerated(0.09) benign(0.263) TCGA-CF-A1HR-01 19 54667458 54667458 G A TMC4 Silent p.L431L 0.07 TCGA-CF-A1HR-01 19 7174599 7174599 C T INSR Missense_Mutation p.G373E 0.14 tolerated(0.43) probably_damaging(1) TCGA-CF-A1HR-01 1 101339508 101339508 C G EXTL2 Missense_Mutation p.R328T 0.10 tolerated_low_confidence(0.09) benign(0) TCGA-CF-A1HR-01 1 12164562 12164562 C T TNFRSF8 Missense_Mutation p.P132L 0.26 deleterious(0.03) possibly_damaging(0.531) TCGA-CF-A1HR-01 1 1374667 1374667 G A VWA1 Missense_Mutation p.D280N 0.33 tolerated(0.23) benign(0.41) TCGA-CF-A1HR-01 1 149906110 149906110 G A MTMR11 Silent p.V219V 0.09 TCGA-CF-A1HR-01 1 149936124 149936124 C T OTUD7B Intron 0.33 TCGA-CF-A1HR-01 1 150325402 150325402 G A PRPF3 Missense_Mutation p.E667K 0.07 deleterious(0) probably_damaging(0.998) TCGA-CF-A1HR-01 1 152085383 152085383 C T TCHH Missense_Mutation p.D104N 0.10 unknown(0) TCGA-CF-A1HR-01 1 152285757 152285757 C T FLG Silent p.S535S 0.16 TCGA-CF-A1HR-01 1 158724630 158724630 C G OR6K6 Missense_Mutation p.Q9E 0.14 tolerated_low_confidence(0.13) benign(0.002) TCGA-CF-A1HR-01 1 158813830 158813830 G A MNDA Missense_Mutation p.G163E 0.07 tolerated(0.49) benign(0.075) TCGA-CF-A1HR-01 1 16111108 16111108 C G FBLIM1 Silent p.L261L 0.07 TCGA-CF-A1HR-01 1 16641903 16641903 G A FBXO42 Missense_Mutation p.S4F 0.13 tolerated_low_confidence(0.09) benign(0.005) TCGA-CF-A1HR-01 1 16727277 16727277 C T SPATA21 Missense_Mutation p.S371N 0.07 tolerated(0.49) benign(0.004) TCGA-CF-A1HR-01 1 171083188 171083188 C T FMO3 Missense_Mutation p.A290V 0.30 tolerated(0.1) possibly_damaging(0.868) TCGA-CF-A1HR-01 1 179989859 179989859 G A CEP350 Missense_Mutation p.E984K 0.05 probably_damaging(0.999) TCGA-CF-A1HR-01 1 179989968 179989968 G C CEP350 Missense_Mutation p.G1020A 0.09 benign(0.297) TCGA-CF-A1HR-01 1 186088322 186088322 G A HMCN1 Splice_Site p.X3950_splice 0.24 TCGA-CF-A1HR-01 1 186319407 186319407 G C TPR Silent p.L908L 0.16 TCGA-CF-A1HR-01 1 198701513 198701513 C T PTPRC Missense_Mutation p.L687F 0.07 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 1 205884398 205884398 C T SLC26A9 Intron 0.12 TCGA-CF-A1HR-01 1 207039849 207039849 C A IL20 Silent p.L82L 0.05 TCGA-CF-A1HR-01 1 209823311 209823311 C G LAMB3 Missense_Mutation p.E61Q 0.05 tolerated(0.45) benign(0.228) TCGA-CF-A1HR-01 1 21103139 21103139 C T HP1BP3 Missense_Mutation p.E101K 0.30 tolerated(0.21) possibly_damaging(0.899) TCGA-CF-A1HR-01 1 215256745 215256745 C G KCNK2 Missense_Mutation p.S6W 0.06 deleterious_low_confidence(0) benign(0.027) TCGA-CF-A1HR-01 1 215963529 215963529 C T USH2A Missense_Mutation p.D3352N 0.04 benign(0.027) TCGA-CF-A1HR-01 1 22336318 22336318 C G CELA3A Missense_Mutation p.R255G 0.17 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 1 227171276 227171276 C G ADCK3 Missense_Mutation p.I368M 0.07 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 1 230795210 230795210 G A COG2 Missense_Mutation p.E25K 0.09 tolerated(0.56) benign(0.07) TCGA-CF-A1HR-01 1 247053281 247053281 C G AHCTF1 Missense_Mutation p.E720Q 0.08 tolerated(0.09) benign(0.126) TCGA-CF-A1HR-01 1 27101309 27101309 G T ARID1A Nonsense_Mutation p.E1531* 0.07 TCGA-CF-A1HR-01 1 27102121 27102121 G C ARID1A Missense_Mutation p.E1683Q 0.21 probably_damaging(0.968) TCGA-CF-A1HR-01 1 32280503 32280503 C G SPOCD1 Missense_Mutation p.E144D 0.31 tolerated(0.15) benign(0.012) TCGA-CF-A1HR-01 1 32742252 32742252 C A LCK Missense_Mutation p.Q277K 0.20 tolerated(0.05) benign(0.003) TCGA-CF-A1HR-01 1 45115332 45115332 G A RNF220 Splice_Site p.X482_splice 0.06 TCGA-CF-A1HR-01 1 45120204 45120204 G C TMEM53 3'UTR 0.17 TCGA-CF-A1HR-01 1 45120468 45120468 G C TMEM53 Missense_Mutation p.F199L 0.18 tolerated(0.64) benign(0.439) TCGA-CF-A1HR-01 1 52704276 52704276 C T ZFYVE9 Missense_Mutation p.S396F 0.16 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-CF-A1HR-01 1 52704805 52704805 C T ZFYVE9 Silent p.I572I 0.14 TCGA-CF-A1HR-01 1 52704876 52704876 C T ZFYVE9 Missense_Mutation p.S596L 0.13 tolerated(0.08) benign(0.076) TCGA-CF-A1HR-01 1 52705008 52705008 C G ZFYVE9 Missense_Mutation p.S640C 0.17 deleterious(0) possibly_damaging(0.67) TCGA-CF-A1HR-01 1 52705108 52705108 C T ZFYVE9 Silent p.L673L 0.14 TCGA-CF-A1HR-01 1 52940613 52940613 G T ZCCHC11 Missense_Mutation p.S873Y 0.12 deleterious(0) probably_damaging(0.945) TCGA-CF-A1HR-01 1 52940833 52940833 G T ZCCHC11 Missense_Mutation p.L800I 0.06 tolerated(0.13) possibly_damaging(0.81) TCGA-CF-A1HR-01 1 52940841 52940841 G C ZCCHC11 Missense_Mutation p.S797C 0.06 deleterious(0.01) probably_damaging(0.919) TCGA-CF-A1HR-01 1 6634783 6634783 G A TAS1R1 Silent p.E197E 0.16 TCGA-CF-A1HR-01 1 880485 880485 C T NOC2L Missense_Mutation p.D699N 0.41 tolerated(0.25) benign(0.109) TCGA-CF-A1HR-01 20 30345274 30345274 G C TPX2 5'UTR 0.04 TCGA-CF-A1HR-01 20 33969816 33969816 T C UQCC1 Missense_Mutation p.K80E 0.27 tolerated(0.05) benign(0.015) TCGA-CF-A1HR-01 20 42271258 42271258 G C IFT52 Missense_Mutation p.L420F 0.09 tolerated(0.07) benign(0.214) TCGA-CF-A1HR-01 20 44640217 44640217 C G MMP9 Silent p.L276L 0.08 TCGA-CF-A1HR-01 20 47841697 47841697 C T DDX27 Silent p.L218L 0.07 TCGA-CF-A1HR-01 20 56136548 56136549 - C PCK1 Frame_Shift_Ins p.R28Qfs*7 0.08 TCGA-CF-A1HR-01 20 57251299 57251299 C T STX16 Silent p.V310V 0.10 TCGA-CF-A1HR-01 20 6021639 6021639 C T LRRN4 3'UTR 0.19 TCGA-CF-A1HR-01 20 61944555 61944555 C T COL20A1 Silent p.Y721Y 0.08 TCGA-CF-A1HR-01 21 34994348 34994349 - T CRYZL1 Frame_Shift_Ins p.D58Gfs*27 0.14 TCGA-CF-A1HR-01 21 36088774 36088774 G A CLIC6 Missense_Mutation p.M685I 0.06 deleterious(0.02) benign(0.413) TCGA-CF-A1HR-01 21 40547542 40547542 C G PSMG1 Missense_Mutation p.E281Q 0.04 deleterious(0.03) benign(0.168) TCGA-CF-A1HR-01 21 41427661 41427661 C G DSCAM Missense_Mutation p.E1676Q 0.22 deleterious(0.04) possibly_damaging(0.652) TCGA-CF-A1HR-01 22 18022144 18022144 C G CECR2 Missense_Mutation p.S750C 0.11 tolerated(0.06) benign(0.009) TCGA-CF-A1HR-01 22 21140347 21140347 G T SERPIND1 Nonsense_Mutation p.E407* 0.07 TCGA-CF-A1HR-01 22 26894901 26894901 C A TFIP11 Missense_Mutation p.S457I 0.04 tolerated(0.21) benign(0.073) TCGA-CF-A1HR-01 22 30421830 30421830 C T MTMR3 3'UTR 0.07 TCGA-CF-A1HR-01 22 31998590 31998590 C T SFI1 Intron 0.25 TCGA-CF-A1HR-01 22 32937554 32937554 C T SYN3 Intron 0.08 TCGA-CF-A1HR-01 22 42523515 42523515 G A CYP2D6 Silent p.I369I 0.08 TCGA-CF-A1HR-01 22 45593787 45593787 G A KIAA0930 Missense_Mutation p.S358L 0.12 tolerated(0.09) probably_damaging(0.984) TCGA-CF-A1HR-01 22 50752253 50752253 C T DENND6B Missense_Mutation p.R398Q 0.33 tolerated(0.5) benign(0.029) TCGA-CF-A1HR-01 2 100019387 100019387 G A REV1 Silent p.L1117L 0.07 TCGA-CF-A1HR-01 2 11911647 11911647 G A LPIN1 Silent p.P195P 0.38 TCGA-CF-A1HR-01 2 120124606 120124606 G A DBI 5'Flank 0.12 TCGA-CF-A1HR-01 2 128066317 128066317 G C MAP3K2 Nonsense_Mutation p.S493* 0.08 TCGA-CF-A1HR-01 2 145157492 145157492 C T ZEB2 Missense_Mutation p.G421E 0.14 deleterious(0.02) possibly_damaging(0.611) TCGA-CF-A1HR-01 2 160035372 160035372 C T TANC1 Silent p.L736L 0.10 TCGA-CF-A1HR-01 2 160295645 160295645 C T BAZ2B Missense_Mutation p.G259S 0.13 possibly_damaging(0.855) TCGA-CF-A1HR-01 2 170502533 170502533 G C CCDC173 Missense_Mutation p.L493V 0.28 deleterious(0) possibly_damaging(0.804) TCGA-CF-A1HR-01 2 170597983 170597983 C A KLHL23 Missense_Mutation p.D434E 0.04 tolerated(0.85) benign(0.012) TCGA-CF-A1HR-01 2 179397871 179397871 C G TTN Missense_Mutation p.E34491Q 0.07 TCGA-CF-A1HR-01 2 179477688 179477688 A G TTN Missense_Mutation p.V16587A 0.11 TCGA-CF-A1HR-01 2 186670315 186670315 A C FSIP2 Missense_Mutation p.T5517P 0.06 benign(0.039) TCGA-CF-A1HR-01 2 203071900 203071900 G C SUMO1 3'UTR 0.26 TCGA-CF-A1HR-01 2 21228021 21228021 C T APOB Missense_Mutation p.D3907N 0.25 probably_damaging(0.987) TCGA-CF-A1HR-01 2 230312236 230312236 C T DNER Missense_Mutation p.E428K 0.11 deleterious(0.02) benign(0.41) TCGA-CF-A1HR-01 2 232321175 232321175 C G NCL Intron 0.08 TCGA-CF-A1HR-01 2 238726510 238726510 G C RBM44 Missense_Mutation p.L317F 0.11 tolerated(0.11) benign(0.176) TCGA-CF-A1HR-01 2 25990452 25990452 T A ASXL2 Nonsense_Mutation p.R259* 0.27 TCGA-CF-A1HR-01 2 27016087 27016087 C G CENPA Silent p.L121L 0.15 TCGA-CF-A1HR-01 2 27360613 27360613 G A C2orf53 Silent p.C195C 0.17 TCGA-CF-A1HR-01 2 27884232 27884232 G A SUPT7L Missense_Mutation p.S13L 0.08 tolerated(0.33) benign(0.054) TCGA-CF-A1HR-01 2 37287790 37287790 C G HEATR5B Missense_Mutation p.E595Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-CF-A1HR-01 2 50779755 50779755 G A NRXN1 Missense_Mutation p.H617Y 0.05 deleterious(0) possibly_damaging(0.873) TCGA-CF-A1HR-01 2 67637048 67637048 G C ETAA1 Missense_Mutation p.E887Q 0.06 deleterious(0.01) possibly_damaging(0.904) TCGA-CF-A1HR-01 2 74757145 74757145 G A HTRA2 Silent p.P4P 0.09 TCGA-CF-A1HR-01 3 108129603 108129603 G C MYH15 Missense_Mutation p.S1461C 0.06 deleterious(0) probably_damaging(0.937) TCGA-CF-A1HR-01 3 109050829 109050829 C T DPPA4 Silent p.Q76Q 0.13 TCGA-CF-A1HR-01 3 112719848 112719848 A G GTPBP8 3'UTR 0.07 TCGA-CF-A1HR-01 3 112968604 112968604 C T BOC 5'UTR 0.07 TCGA-CF-A1HR-01 3 11301597 11301597 G A HRH1 Missense_Mutation p.E292K 0.06 tolerated(0.47) benign(0.017) TCGA-CF-A1HR-01 3 120315170 120315170 G A NDUFB4 5'UTR 0.15 TCGA-CF-A1HR-01 3 121412961 121412961 C G GOLGB1 Missense_Mutation p.E2137Q 0.11 possibly_damaging(0.642) TCGA-CF-A1HR-01 3 121413280 121413280 C T GOLGB1 Silent p.Q2030Q 0.08 TCGA-CF-A1HR-01 3 122186201 122186201 C T KPNA1 Missense_Mutation p.E69K 0.07 tolerated(0.31) benign(0.217) TCGA-CF-A1HR-01 3 122811201 122811201 G A PDIA5 Splice_Site p.X57_splice 0.08 TCGA-CF-A1HR-01 3 12977699 12977699 C T IQSEC1 Missense_Mutation p.G287S 0.11 tolerated(0.19) benign(0) TCGA-CF-A1HR-01 3 1418703 1418703 C T CNTN6 Missense_Mutation p.P704S 0.03 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 3 14861786 14861786 G C FGD5 Missense_Mutation p.G403A 0.09 tolerated_low_confidence(0.44) benign(0.01) TCGA-CF-A1HR-01 3 15642996 15642996 C G HACL1 5'UTR 0.15 TCGA-CF-A1HR-01 3 15643075 15643075 C G HACL1 5'UTR 0.20 TCGA-CF-A1HR-01 3 169644760 169644760 C T SAMD7 Missense_Mutation p.S237L 0.15 tolerated(0.38) benign(0.016) TCGA-CF-A1HR-01 3 179448467 179448467 C G USP13 Silent p.L408L 0.08 TCGA-CF-A1HR-01 3 179526147 179526147 C G PEX5L Missense_Mutation p.Q477H 0.06 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 3 183217456 183217456 C G KLHL6 Missense_Mutation p.E357Q 0.07 tolerated(0.05) possibly_damaging(0.833) TCGA-CF-A1HR-01 3 185636158 185636158 G A TRA2B Missense_Mutation p.S284L 0.04 deleterious_low_confidence(0.01) benign(0.184) TCGA-CF-A1HR-01 3 36874809 36874809 C T TRANK1 Missense_Mutation p.E2045K 0.06 tolerated(0.07) benign(0.066) TCGA-CF-A1HR-01 3 47158213 47158213 G A SETD2 Nonsense_Mutation p.R1496* 0.08 TCGA-CF-A1HR-01 3 48609570 48609570 C T COL7A1 Missense_Mutation p.R2338Q 0.18 probably_damaging(0.997) TCGA-CF-A1HR-01 3 50379109 50379109 C T ZMYND10 Silent p.L381L 0.17 TCGA-CF-A1HR-01 3 57543244 57543244 G A PDE12 Missense_Mutation p.E380K 0.05 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 3 57994493 57994493 C G FLNB Missense_Mutation p.Q68E 0.04 tolerated(0.19) benign(0.055) TCGA-CF-A1HR-01 3 58377546 58377546 G A PXK Missense_Mutation p.C196Y 0.08 tolerated(0.38) benign(0.001) TCGA-CF-A1HR-01 3 58508267 58508267 C T ACOX2 Missense_Mutation p.E530K 0.24 tolerated(0.3) possibly_damaging(0.686) TCGA-CF-A1HR-01 3 63938123 63938123 C T ATXN7 Nonsense_Mutation p.Q155* 0.07 TCGA-CF-A1HR-01 3 63975994 63975994 G A ATXN7 Missense_Mutation p.E502K 0.04 deleterious(0.02) probably_damaging(0.984) TCGA-CF-A1HR-01 3 69027583 69027583 G A EOGT Silent p.Y362Y 0.08 TCGA-CF-A1HR-01 3 71050197 71050197 C G FOXP1 Missense_Mutation p.E332Q 0.07 deleterious(0) probably_damaging(0.978) TCGA-CF-A1HR-01 4 142147922 142147922 G A ZNF330 Silent p.G71G 0.18 TCGA-CF-A1HR-01 4 155458505 155458505 G C PLRG1 Missense_Mutation p.S473C 0.26 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 4 174254744 174254744 G A HMGB2 Silent p.F19F 0.09 TCGA-CF-A1HR-01 4 183675804 183675804 G C TENM3 Silent p.R1428R 0.07 TCGA-CF-A1HR-01 4 186278863 186278863 C T SNX25 Nonsense_Mutation p.Q711* 0.08 TCGA-CF-A1HR-01 4 1980413 1980413 C T WHSC1 Missense_Mutation p.S1292L 0.11 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 4 39905710 39905710 C T PDS5A Nonsense_Mutation p.W445* 0.08 TCGA-CF-A1HR-01 4 57325748 57325748 C G PAICS 3'UTR 0.11 TCGA-CF-A1HR-01 4 6873346 6873346 G A KIAA0232 Missense_Mutation p.E1283K 0.11 deleterious_low_confidence(0.03) benign(0.005) TCGA-CF-A1HR-01 4 74719041 74719041 C T PF4V1 5'UTR 0.14 TCGA-CF-A1HR-01 4 74853297 74853297 G A PPBP Missense_Mutation p.P74L 0.27 tolerated(0.61) probably_damaging(0.993) TCGA-CF-A1HR-01 4 78663304 78663304 T C CNOT6L Missense_Mutation p.K288R 0.16 tolerated(0.39) benign(0.074) TCGA-CF-A1HR-01 4 81967324 81967324 C T BMP3 Missense_Mutation p.S250F 0.12 deleterious(0) probably_damaging(0.91) TCGA-CF-A1HR-01 4 83996452 83996452 C T COPS4 Nonsense_Mutation p.R364* 0.08 TCGA-CF-A1HR-01 4 87139 87139 A G Z95704.2 RNA 0.27 TCGA-CF-A1HR-01 5 131007915 131007915 G A FNIP1 Missense_Mutation p.S741L 0.09 tolerated(0.12) benign(0.003) TCGA-CF-A1HR-01 5 13865914 13865914 C G DNAH5 Missense_Mutation p.K1406N 0.14 possibly_damaging(0.728) TCGA-CF-A1HR-01 5 140605521 140605521 G C PCDHB14 3'UTR 0.07 TCGA-CF-A1HR-01 5 140683215 140683215 G A SLC25A2 Missense_Mutation p.A73V 0.06 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 5 145239353 145239353 C T GRXCR2 Silent p.L230L 0.09 TCGA-CF-A1HR-01 5 145894520 145894520 A T GPR151 Missense_Mutation p.V386E 0.32 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 5 151169904 151169904 C T G3BP1 Missense_Mutation p.S39F 0.09 deleterious(0) probably_damaging(0.998) TCGA-CF-A1HR-01 5 37045560 37045560 T A NIPBL Nonsense_Mutation p.L2120* 0.25 TCGA-CF-A1HR-01 5 37703084 37703084 C G WDR70 Silent p.L437L 0.05 TCGA-CF-A1HR-01 5 38484884 38484884 G A LIFR Nonsense_Mutation p.R862* 0.12 TCGA-CF-A1HR-01 5 43161885 43161885 A G ZNF131 Silent p.A268A 0.23 TCGA-CF-A1HR-01 5 52778823 52778823 G C FST Missense_Mutation p.E67Q 0.21 tolerated(0.25) benign(0.101) TCGA-CF-A1HR-01 5 54579357 54579357 C T DHX29 Missense_Mutation p.E547K 0.07 tolerated(0.3) benign(0.007) TCGA-CF-A1HR-01 5 54579455 54579455 C G DHX29 Missense_Mutation p.R514T 0.11 tolerated(0.57) benign(0) TCGA-CF-A1HR-01 5 68661350 68661350 C T TAF9 Missense_Mutation p.R72Q 0.09 deleterious(0.03) benign(0.168) TCGA-CF-A1HR-01 5 74869692 74869692 G C POLK Missense_Mutation p.E180Q 0.05 tolerated(0.19) benign(0.025) TCGA-CF-A1HR-01 5 74970317 74970317 G C POC5 Silent p.T557T 0.18 TCGA-CF-A1HR-01 6 111498880 111498880 C G SLC16A10 Intron 0.07 TCGA-CF-A1HR-01 6 118791768 118791768 G C CEP85L Missense_Mutation p.Q655E 0.05 deleterious(0.05) benign(0.005) TCGA-CF-A1HR-01 6 1313343 1313343 C T FOXQ1 Missense_Mutation p.S135L 0.40 deleterious(0) probably_damaging(0.996) TCGA-CF-A1HR-01 6 133070857 133070857 G A VNN2 Missense_Mutation p.H450Y 0.06 deleterious(0) benign(0.328) TCGA-CF-A1HR-01 6 136599168 136599168 T C BCLAF1 Missense_Mutation p.Y284C 0.09 deleterious(0) possibly_damaging(0.878) TCGA-CF-A1HR-01 6 150005065 150005065 G A LATS1 Missense_Mutation p.S387F 0.12 deleterious_low_confidence(0) benign(0.248) TCGA-CF-A1HR-01 6 150005361 150005361 G C LATS1 Missense_Mutation p.I288M 0.10 tolerated_low_confidence(0.2) benign(0.062) TCGA-CF-A1HR-01 6 24503595 24503595 C T ALDH5A1 Silent p.T181T 0.17 TCGA-CF-A1HR-01 6 27925387 27925387 T A OR2B6 Missense_Mutation p.F123L 0.20 deleterious(0) benign(0.265) TCGA-CF-A1HR-01 6 33391253 33391253 G C SYNGAP1 Splice_Site p.X23_splice 0.26 TCGA-CF-A1HR-01 6 54025594 54025594 C G MLIP Silent p.V297V 0.08 TCGA-CF-A1HR-01 6 76576333 76576333 G A MYO6 Missense_Mutation p.E589K 0.11 tolerated(0.07) unknown(0) TCGA-CF-A1HR-01 6 97247160 97247160 C T GPR63 Missense_Mutation p.G150R 0.28 deleterious(0) probably_damaging(1) TCGA-CF-A1HR-01 7 100731650 100731650 G C TRIM56 Missense_Mutation p.E353Q 0.31 tolerated(0.21) benign(0.017) TCGA-CF-A1HR-01 7 120969831 120969831 G A WNT16 Silent p.P102P 0.13 TCGA-CF-A1HR-01 7 130067815 130067815 G C CEP41 Missense_Mutation p.I26M 0.34 deleterious(0) benign(0.299) TCGA-CF-A1HR-01 7 142605898 142605898 C T TRPV5 Missense_Mutation p.D658N 0.08 tolerated(0.18) benign(0.005) TCGA-CF-A1HR-01 7 143141483 143141483 C T TAS2R60 Missense_Mutation p.S313L 0.07 tolerated(0.13) benign(0.001) TCGA-CF-A1HR-01 7 146536942 146536942 C G CNTNAP2 Silent p.L116L 0.12 TCGA-CF-A1HR-01 7 149522395 149522395 C T SSPO RNA 0.22 TCGA-CF-A1HR-01 7 150439547 150439547 C G GIMAP5 Missense_Mutation p.S107C 0.11 tolerated(0.18) benign(0.359) TCGA-CF-A1HR-01 7 150439620 150439620 C G GIMAP5 Missense_Mutation p.I131M 0.07 deleterious(0.04) benign(0.026) TCGA-CF-A1HR-01 7 150840866 150840866 C G AGAP3 Missense_Mutation p.P858A 0.06 tolerated(1) benign(0.075) TCGA-CF-A1HR-01 7 21775305 21775305 G A DNAH11 Missense_Mutation p.M2503I 0.12 benign(0.001) TCGA-CF-A1HR-01 7 23810677 23810677 G T STK31 Silent p.L589L 0.31 TCGA-CF-A1HR-01 7 27135406 27135406 G A HOXA1 Silent p.V42V 0.09 TCGA-CF-A1HR-01 7 27194846 27194846 G A HOXA7 Intron 0.22 TCGA-CF-A1HR-01 7 42957149 42957149 C T PSMA2 3'UTR 0.07 TCGA-CF-A1HR-01 8 110535087 110535087 C T PKHD1L1 Nonsense_Mutation p.Q4100* 0.24 TCGA-CF-A1HR-01 8 124250182 124250182 C G C8orf76 Splice_Site p.X72_splice 0.07 TCGA-CF-A1HR-01 8 133623581 133623581 C T LRRC6 Missense_Mutation p.D335N 0.06 deleterious(0.02) possibly_damaging(0.54) TCGA-CF-A1HR-01 8 136594141 136594141 C T KHDRBS3 Missense_Mutation p.A211V 0.16 tolerated(0.34) benign(0.053) TCGA-CF-A1HR-01 8 145013596 145013596 C A PLEC Intron 0.30 TCGA-CF-A1HR-01 8 145753430 145753430 C G C8orf82 Missense_Mutation p.K61N 0.17 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 8 27645505 27645505 G C ESCO2 Missense_Mutation p.D373H 0.10 deleterious(0) probably_damaging(0.91) TCGA-CF-A1HR-01 8 30889612 30889612 C T PURG Missense_Mutation p.M229I 0.10 tolerated(0.11) possibly_damaging(0.472) TCGA-CF-A1HR-01 8 442608 442608 C T TDRP Missense_Mutation p.E117K 0.10 deleterious(0.01) possibly_damaging(0.817) TCGA-CF-A1HR-01 8 442629 442629 C A TDRP Nonsense_Mutation p.E110* 0.11 TCGA-CF-A1HR-01 8 54147422 54147422 G A OPRK1 Silent p.F169F 0.05 TCGA-CF-A1HR-01 8 76471126 76471126 A G HNF4G Missense_Mutation p.Y316C 0.27 tolerated(0.07) possibly_damaging(0.492) TCGA-CF-A1HR-01 9 114691868 114691868 G A UGCG Missense_Mutation p.R216K 0.44 tolerated(0.05) possibly_damaging(0.557) TCGA-CF-A1HR-01 9 125797112 125797112 C T GPR21 Silent p.L89L 0.43 TCGA-CF-A1HR-01 9 13113048 13113048 A G MPDZ Missense_Mutation p.S1826P 0.15 deleterious(0.03) benign(0.017) TCGA-CF-A1HR-01 9 135786887 135786887 G A TSC1 Nonsense_Mutation p.Q328* 0.32 TCGA-CF-A1HR-01 9 137676852 137676852 C T COL5A1 Silent p.P834P 0.07 TCGA-CF-A1HR-01 9 138439763 138439763 C T OBP2A Silent p.D108D 0.12 TCGA-CF-A1HR-01 9 139313052 139313052 G A PMPCA Missense_Mutation p.G346R 0.08 deleterious(0.02) probably_damaging(1) TCGA-CF-A1HR-01 9 6252898 6252898 C A IL33 Missense_Mutation p.L126I 0.29 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HR-01 9 6253549 6253549 C T IL33 Intron 0.35 TCGA-CF-A1HR-01 9 95155527 95155527 C T OGN Splice_Site p.X90_splice 0.12 TCGA-CF-A1HR-01 9 96415473 96415473 C T PHF2 Silent p.F205F 0.17 TCGA-CF-A1HR-01 9 99522220 99522220 C G ZNF510 Missense_Mutation p.D298H 0.07 tolerated(0.57) benign(0.38) TCGA-CF-A1HR-01 X 117788597 117788597 G C DOCK11 Missense_Mutation p.L1576F 0.33 deleterious(0) probably_damaging(0.953) TCGA-CF-A1HR-01 X 129206253 129206253 C T ELF4 Silent p.E160E 0.10 TCGA-CF-A1HR-01 X 130220601 130220601 G T ARHGAP36 Missense_Mutation p.R483L 0.61 tolerated(0.08) benign(0.016) TCGA-CF-A1HR-01 X 134421722 134421722 C T ZNF75D Missense_Mutation p.E294K 0.11 deleterious(0.03) benign(0.074) TCGA-CF-A1HR-01 X 16170863 16170863 C T GRPR 3'UTR 0.49 TCGA-CF-A1HR-01 X 26213332 26213332 G A MAGEB6 3'UTR 0.73 TCGA-CF-A1HR-01 X 37955435 37955435 C T SYTL5 Missense_Mutation p.S337L 0.16 tolerated(0.33) benign(0.001) TCGA-CF-A1HR-01 X 48895743 48895743 G A TFE3 Silent p.I253I 0.10 TCGA-CF-A1HR-01 X 49070628 49070628 G C CACNA1F Missense_Mutation p.F1244L 0.10 tolerated(0.12) benign(0.293) TCGA-CF-A1HS-01 10 102265919 102265919 C G SEC31B Missense_Mutation p.D308H 0.11 deleterious(0) benign(0.429) TCGA-CF-A1HS-01 10 102676898 102676898 G C FAM178A Missense_Mutation p.L252F 0.13 tolerated(0.12) possibly_damaging(0.818) TCGA-CF-A1HS-01 10 104139673 104139673 G C GBF1 Missense_Mutation p.E1613Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-CF-A1HS-01 10 105495508 105495508 G T SH3PXD2A Silent p.P96P 0.21 TCGA-CF-A1HS-01 10 11505382 11505382 G A USP6NL Silent p.L532L 0.13 TCGA-CF-A1HS-01 10 121541205 121541205 A G INPP5F Silent p.G79G 0.20 TCGA-CF-A1HS-01 10 16911847 16911847 C G CUBN Missense_Mutation p.S3081T 0.15 tolerated(0.17) benign(0.008) TCGA-CF-A1HS-01 10 53458275 53458275 G C CSTF2T Silent p.V345V 0.22 TCGA-CF-A1HS-01 10 94836385 94836385 G C CYP26A1 Missense_Mutation p.E362Q 0.21 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 10 97446269 97446269 C G TCTN3 Missense_Mutation p.D291H 0.08 tolerated(0.07) benign(0.111) TCGA-CF-A1HS-01 10 97775978 97775978 C T CC2D2B Silent p.I143I 0.23 TCGA-CF-A1HS-01 11 118771774 118771774 G A BCL9L Missense_Mutation p.P893L 0.55 benign(0.046) TCGA-CF-A1HS-01 11 18487256 18487256 G A LDHAL6A Missense_Mutation p.R106H 0.07 tolerated(0.06) possibly_damaging(0.744) TCGA-CF-A1HS-01 11 47364473 47364473 G A MYBPC3 Silent p.L455L 0.23 TCGA-CF-A1HS-01 11 56756546 56756546 C G OR5AK2 Missense_Mutation p.S53C 0.57 deleterious(0.01) possibly_damaging(0.853) TCGA-CF-A1HS-01 11 57080263 57080263 G A TNKS1BP1 Silent p.L633L 0.33 TCGA-CF-A1HS-01 11 57946980 57946980 G A OR9Q1 Missense_Mutation p.E22K 0.06 tolerated(0.18) benign(0.271) TCGA-CF-A1HS-01 11 57958572 57958572 C G OR9Q2 Missense_Mutation p.L204V 0.57 tolerated(0.54) benign(0.002) TCGA-CF-A1HS-01 11 64427940 64427940 C T NRXN2 Silent p.T751T 0.12 TCGA-CF-A1HS-01 11 64502637 64502637 G A RASGRP2 Silent p.I453I 0.22 TCGA-CF-A1HS-01 11 65124558 65124558 C - TIGD3 Frame_Shift_Del p.L428Cfs*14 0.46 TCGA-CF-A1HS-01 11 67017821 67017821 C T KDM2A Missense_Mutation p.R774W 0.19 deleterious(0.01) possibly_damaging(0.638) TCGA-CF-A1HS-01 11 6867721 6867721 G C OR10A5 Missense_Mutation p.E270Q 0.26 tolerated(0.09) possibly_damaging(0.551) TCGA-CF-A1HS-01 11 721618 721618 G A EPS8L2 Silent p.Q274Q 0.46 TCGA-CF-A1HS-01 12 111064234 111064234 C G TCTN1 Missense_Mutation p.Q137E 0.16 tolerated(0.7) benign(0.005) TCGA-CF-A1HS-01 12 112666449 112666449 A G HECTD4 Splice_Site p.X2082_splice 0.09 TCGA-CF-A1HS-01 12 115115443 115115443 C G TBX3 Missense_Mutation p.D295H 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-CF-A1HS-01 12 132475243 132475243 G T EP400 Missense_Mutation p.Q871H 0.20 unknown(0) TCGA-CF-A1HS-01 12 13256440 13256440 C G GSG1 Missense_Mutation p.D3H 0.10 tolerated_low_confidence(0.06) benign(0.325) TCGA-CF-A1HS-01 12 14827597 14827597 G T GUCY2C Missense_Mutation p.P349H 0.05 tolerated(0.58) benign(0.013) TCGA-CF-A1HS-01 12 15803941 15803941 C T EPS8 Splice_Site p.X417_splice 0.14 TCGA-CF-A1HS-01 12 21028199 21028199 G C SLCO1B3 Missense_Mutation p.R253P 0.13 deleterious(0) probably_damaging(0.997) TCGA-CF-A1HS-01 12 25706115 25706115 G A IFLTD1 5'UTR 0.33 TCGA-CF-A1HS-01 12 26839539 26839539 C G ITPR2 Missense_Mutation p.K341N 0.04 tolerated(0.34) benign(0.388) TCGA-CF-A1HS-01 12 32136794 32136796 ATA CATC KIAA1551 Frame_Shift_Ins p.I969Hfs*3 0.09 TCGA-CF-A1HS-01 12 32480490 32480490 G A BICD1 Silent p.R367R 0.11 TCGA-CF-A1HS-01 12 41337797 41337797 A G CNTN1 Missense_Mutation p.D503G 0.16 deleterious(0) benign(0.002) TCGA-CF-A1HS-01 12 420231 420231 C G KDM5A Splice_Site p.X1013_splice 0.06 TCGA-CF-A1HS-01 12 45567619 45567619 G A PLEKHA8P1 RNA 0.04 TCGA-CF-A1HS-01 12 49258602 49258602 C T RND1 Missense_Mutation p.E58K 0.13 tolerated(1) benign(0.009) TCGA-CF-A1HS-01 12 52882204 52882204 C T KRT6A Silent p.L444L 0.42 TCGA-CF-A1HS-01 12 7639982 7639982 C T CD163 Missense_Mutation p.E675K 0.10 deleterious(0.02) benign(0.099) TCGA-CF-A1HS-01 12 9268390 9268390 A G A2M Missense_Mutation p.L19P 0.12 deleterious(0.01) probably_damaging(0.928) TCGA-CF-A1HS-01 13 100635308 100635308 G C ZIC2 Missense_Mutation p.E330D 0.04 deleterious(0) benign(0.108) TCGA-CF-A1HS-01 13 23915126 23915126 A G SACS Silent p.S963S 0.21 TCGA-CF-A1HS-01 13 41705450 41705450 G A KBTBD6 Nonsense_Mutation p.Q400* 0.18 TCGA-CF-A1HS-01 13 45010788 45010788 C T TSC22D1 Intron 0.19 TCGA-CF-A1HS-01 13 52667254 52667254 G C NEK5 Missense_Mutation p.Q382E 0.25 tolerated(0.14) benign(0.007) TCGA-CF-A1HS-01 13 73636553 73636553 G A KLF5 Silent p.Q272Q 0.17 TCGA-CF-A1HS-01 13 77825292 77825292 G C MYCBP2 Missense_Mutation p.P754R 0.10 probably_damaging(0.997) TCGA-CF-A1HS-01 13 86369424 86369424 A C SLITRK6 Missense_Mutation p.F407C 0.22 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 14 105707692 105707692 C T BRF1 Missense_Mutation p.E202K 0.27 deleterious(0.04) benign(0.168) TCGA-CF-A1HS-01 14 106641716 106641716 C G IGHV1-18 Missense_Mutation p.W66C 0.03 deleterious(0) probably_damaging(0.998) TCGA-CF-A1HS-01 14 36003540 36003540 C G INSM2 Missense_Mutation p.L28V 0.30 tolerated(0.26) benign(0.068) TCGA-CF-A1HS-01 14 52433361 52433361 G C GNG2 Missense_Mutation p.E58Q 0.40 deleterious(0.03) probably_damaging(1) TCGA-CF-A1HS-01 14 59930507 59930507 C T GPR135 Missense_Mutation p.A480T 0.26 tolerated(0.35) benign(0.004) TCGA-CF-A1HS-01 14 77242312 77242312 G A VASH1 Missense_Mutation p.R203H 0.30 tolerated(0.89) benign(0.02) TCGA-CF-A1HS-01 14 77242313 77242313 C T VASH1 Silent p.R203R 0.30 TCGA-CF-A1HS-01 15 22980128 22980128 C G CYFIP1 Missense_Mutation p.Q876E 0.08 tolerated(0.72) benign(0.008) TCGA-CF-A1HS-01 15 40599877 40599877 G T PLCB2 5'UTR 0.12 TCGA-CF-A1HS-01 15 40758317 40758317 G C BAHD1 Missense_Mutation p.K777N 0.26 deleterious(0) probably_damaging(0.995) TCGA-CF-A1HS-01 15 41817271 41817271 C T RPAP1 Missense_Mutation p.E665K 0.67 tolerated(0.2) benign(0.007) TCGA-CF-A1HS-01 15 42138489 42138489 G T PLA2G4B Missense_Mutation p.W794C 0.06 tolerated(0.11) benign(0.394) TCGA-CF-A1HS-01 15 44029022 44029022 C G RNU6-354P 5'Flank 0.22 TCGA-CF-A1HS-01 15 54435219 54435219 C T UNC13C Silent p.S996S 0.11 TCGA-CF-A1HS-01 15 64163136 64163136 G A MIR422A RNA 0.25 TCGA-CF-A1HS-01 15 66621672 66621672 A G DIS3L Missense_Mutation p.K824E 0.10 tolerated(0.49) benign(0) TCGA-CF-A1HS-01 15 74573023 74573023 C G CCDC33 Missense_Mutation p.P302A 0.08 tolerated(0.08) possibly_damaging(0.908) TCGA-CF-A1HS-01 15 75116785 75116785 C G LMAN1L Missense_Mutation p.Q473E 0.05 deleterious(0) probably_damaging(0.996) TCGA-CF-A1HS-01 15 81628953 81628953 C G TMC3 Missense_Mutation p.E734Q 0.04 tolerated(0.33) benign(0.039) TCGA-CF-A1HS-01 15 90172769 90172769 C G KIF7 Missense_Mutation p.Q1118H 0.20 tolerated(0.18) benign(0.012) TCGA-CF-A1HS-01 16 11855265 11855265 A G ZC3H7A Silent p.F772F 0.10 TCGA-CF-A1HS-01 16 19693640 19693640 C T C16orf62 Missense_Mutation p.R908C 0.08 tolerated(0.17) probably_damaging(0.953) TCGA-CF-A1HS-01 16 29376067 29376067 G C SNX29P2 RNA 0.22 TCGA-CF-A1HS-01 16 58030577 58030577 C G ZNF319 Missense_Mutation p.K531N 0.24 tolerated(0.06) probably_damaging(0.997) TCGA-CF-A1HS-01 16 66847711 66847711 G C NAE1 Silent p.R293R 0.07 TCGA-CF-A1HS-01 16 67578917 67578917 G T FAM65A Missense_Mutation p.E996D 0.04 tolerated(0.2) benign(0.217) TCGA-CF-A1HS-01 16 67695398 67695398 C A PARD6A Nonsense_Mutation p.S35* 0.17 TCGA-CF-A1HS-01 16 67696109 67696109 G C PARD6A Silent p.G200G 0.11 TCGA-CF-A1HS-01 16 71668136 71668136 C T MARVELD3 Intron 0.65 TCGA-CF-A1HS-01 16 737292 737292 C T WDR24 Missense_Mutation p.E262K 0.21 deleterious(0.02) benign(0.108) TCGA-CF-A1HS-01 16 84135448 84135448 G C MBTPS1 5'UTR 0.14 TCGA-CF-A1HS-01 16 89211739 89211739 C G ACSF3 Missense_Mutation p.I477M 0.21 deleterious(0) probably_damaging(0.954) TCGA-CF-A1HS-01 17 10351974 10351974 G C MYH4 Missense_Mutation p.H1498D 0.05 tolerated(0.05) benign(0.115) TCGA-CF-A1HS-01 17 19861601 19861601 A T AKAP10 Missense_Mutation p.D201E 0.24 tolerated(1) benign(0) TCGA-CF-A1HS-01 17 30678830 30678830 G A ZNF207 Missense_Mutation p.E23K 0.03 deleterious(0) possibly_damaging(0.801) TCGA-CF-A1HS-01 17 40342704 40342705 GC T GHDC Frame_Shift_Del p.A409Kfs*37 0.40 TCGA-CF-A1HS-01 17 4086740 4086740 G C ANKFY1 Missense_Mutation p.S677R 0.16 deleterious(0.02) benign(0.308) TCGA-CF-A1HS-01 17 48618412 48618412 C T EPN3 Missense_Mutation p.S413F 0.48 tolerated(0.09) benign(0.004) TCGA-CF-A1HS-01 17 5086349 5086349 C T ZNF594 Silent p.E401E 0.05 TCGA-CF-A1HS-01 17 59763273 59763273 G A BRIP1 Silent p.V943V 0.12 TCGA-CF-A1HS-01 17 59853848 59853848 C G BRIP1 Missense_Mutation p.E671Q 0.04 tolerated(0.06) possibly_damaging(0.84) TCGA-CF-A1HS-01 17 60023934 60023934 G C MED13 Silent p.L2140L 0.07 TCGA-CF-A1HS-01 17 74152378 74152378 C T RNF157 Missense_Mutation p.E480K 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.507) TCGA-CF-A1HS-01 17 7577121 7577121 G T TP53 Missense_Mutation p.R273S 0.44 deleterious(0) probably_damaging(0.996) TCGA-CF-A1HS-01 17 7577122 7577122 C T TP53 Silent p.V272V 0.44 TCGA-CF-A1HS-01 17 7806657 7806657 C T CHD3 Missense_Mutation p.A1247V 0.06 possibly_damaging(0.499) TCGA-CF-A1HS-01 17 79674028 79674028 C G SLC25A10 Missense_Mutation p.I146M 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CF-A1HS-01 17 80403819 80403819 C G C17orf62 Missense_Mutation p.K73N 0.08 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HS-01 18 2599084 2599084 G C NDC80 Missense_Mutation p.E430Q 0.13 deleterious(0.01) possibly_damaging(0.54) TCGA-CF-A1HS-01 18 3596897 3596897 C G DLGAP1 Intron 0.10 TCGA-CF-A1HS-01 18 56402448 56402448 A T MALT1 Missense_Mutation p.E497V 0.41 deleterious(0.01) possibly_damaging(0.572) TCGA-CF-A1HS-01 18 74593443 74593443 A G ZNF236 Missense_Mutation p.I462M 0.56 tolerated(0.08) benign(0.025) TCGA-CF-A1HS-01 19 10671688 10671688 C T KRI1 Silent p.L224L 0.33 TCGA-CF-A1HS-01 19 15770248 15770248 A C CYP4F3 3'UTR 0.14 TCGA-CF-A1HS-01 19 16631462 16631462 C T C19orf44 3'UTR 0.15 TCGA-CF-A1HS-01 19 16631600 16631600 C G C19orf44 3'UTR 0.38 TCGA-CF-A1HS-01 19 1800007 1800007 C A ATP8B3 Silent p.T497T 0.23 TCGA-CF-A1HS-01 19 1953988 1953988 G C CSNK1G2 Intron 0.52 TCGA-CF-A1HS-01 19 39063871 39063871 G C RYR1 Missense_Mutation p.D4685H 0.05 unknown(0) TCGA-CF-A1HS-01 19 40095312 40095312 C G LGALS13 Missense_Mutation p.S29C 0.43 tolerated(0.4) benign(0.02) TCGA-CF-A1HS-01 19 40582009 40582009 C G ZNF780A Missense_Mutation p.E115Q 0.04 tolerated(0.13) benign(0.002) TCGA-CF-A1HS-01 19 4409533 4409533 T G CHAF1A Missense_Mutation p.L246W 0.17 deleterious(0) unknown(0) TCGA-CF-A1HS-01 19 44778142 44778142 G A ZNF233 Silent p.Q443Q 0.27 TCGA-CF-A1HS-01 19 46117878 46117878 C G EML2 Missense_Mutation p.G761R 0.21 deleterious(0) probably_damaging(0.974) TCGA-CF-A1HS-01 19 4793524 4793524 A G FEM1A Missense_Mutation p.Y553C 0.34 deleterious(0.02) probably_damaging(1) TCGA-CF-A1HS-01 19 49657670 49657670 G T HRC Silent p.G275G 0.36 TCGA-CF-A1HS-01 19 49692258 49692258 C G TRPM4 Silent p.L643L 0.33 TCGA-CF-A1HS-01 19 52620235 52620235 T C ZNF616 Missense_Mutation p.E61G 0.06 tolerated(1) benign(0.003) TCGA-CF-A1HS-01 19 53454831 53454831 G C ZNF816 Missense_Mutation p.S66C 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-CF-A1HS-01 19 54823808 54823808 G A LILRA5 Silent p.L29L 0.56 TCGA-CF-A1HS-01 19 55451137 55451137 C T NLRP7 Missense_Mutation p.M350I 0.06 tolerated(0.09) benign(0.131) TCGA-CF-A1HS-01 19 8808755 8808755 G C ACTL9 Silent p.G99G 0.11 TCGA-CF-A1HS-01 1 103544384 103544384 T C COL11A1 Silent p.K106K 0.25 TCGA-CF-A1HS-01 1 110210703 110210703 G A GSTM2 5'UTR 0.21 TCGA-CF-A1HS-01 1 112524482 112524482 G C KCND3 Silent p.L289L 0.11 TCGA-CF-A1HS-01 1 117640030 117640030 C A TTF2 Missense_Mutation p.H1082N 0.18 deleterious(0.02) probably_damaging(0.919) TCGA-CF-A1HS-01 1 144922578 144922578 G C PDE4DIP Missense_Mutation p.Q277E 0.08 deleterious(0) benign(0.12) TCGA-CF-A1HS-01 1 1469490 1469490 C T ATAD3A 3'UTR 0.22 TCGA-CF-A1HS-01 1 149879685 149879685 T C SV2A Missense_Mutation p.K485E 0.22 tolerated(0.08) possibly_damaging(0.507) TCGA-CF-A1HS-01 1 150973046 150973046 G T FAM63A Missense_Mutation p.L256M 0.09 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 1 151110521 151110521 C G SEMA6C Missense_Mutation p.R203T 0.15 deleterious(0) probably_damaging(0.954) TCGA-CF-A1HS-01 1 151139670 151139670 G C SCNM1 Missense_Mutation p.L95F 0.05 tolerated(0.21) possibly_damaging(0.474) TCGA-CF-A1HS-01 1 151338296 151338296 C T SELENBP1 Silent p.V290V 0.06 TCGA-CF-A1HS-01 1 151378787 151378787 G A POGZ Silent p.L908L 0.19 TCGA-CF-A1HS-01 1 151801935 151801935 C T RORC Splice_Site p.X14_splice 0.19 TCGA-CF-A1HS-01 1 152287037 152287037 T C FLG Missense_Mutation p.K109E 0.05 benign(0.176) TCGA-CF-A1HS-01 1 152749146 152749146 C G LCE1F Nonsense_Mutation p.S100* 0.12 TCGA-CF-A1HS-01 1 153043293 153043293 C T SPRR2B Missense_Mutation p.C8Y 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-CF-A1HS-01 1 153615626 153615626 A G CHTOP Intron 0.05 TCGA-CF-A1HS-01 1 153724860 153724860 C T INTS3 Nonsense_Mutation p.Q279* 0.04 TCGA-CF-A1HS-01 1 155695275 155695275 C G DAP3 Missense_Mutation p.L125V 0.17 tolerated(1) benign(0.047) TCGA-CF-A1HS-01 1 156593922 156593922 G A HAPLN2 Missense_Mutation p.E137K 0.14 tolerated(0.07) probably_damaging(0.928) TCGA-CF-A1HS-01 1 156642464 156642464 C G NES Missense_Mutation p.E506Q 0.10 deleterious(0) probably_damaging(0.969) TCGA-CF-A1HS-01 1 165649774 165649774 G A ALDH9A1 Missense_Mutation p.P247S 0.16 deleterious(0.01) benign(0.154) TCGA-CF-A1HS-01 1 168278089 168278089 C G TBX19 Silent p.T342T 0.07 TCGA-CF-A1HS-01 1 169847899 169847899 T A SCYL3 Missense_Mutation p.D76V 0.21 deleterious(0) possibly_damaging(0.836) TCGA-CF-A1HS-01 1 179834235 179834235 T A IFRG15 Missense_Mutation p.Y26F 0.06 tolerated_low_confidence(0.09) benign(0.016) TCGA-CF-A1HS-01 1 186273374 186273374 G C PRG4 Missense_Mutation p.E152Q 0.07 possibly_damaging(0.776) TCGA-CF-A1HS-01 1 196749062 196749062 C T CFHR3 Missense_Mutation p.T130M 0.05 tolerated(0.22) benign(0.001) TCGA-CF-A1HS-01 1 201972454 201972454 G A RNPEP Missense_Mutation p.E506K 0.47 tolerated(0.09) possibly_damaging(0.672) TCGA-CF-A1HS-01 1 201981201 201981201 C G ELF3 Missense_Mutation p.R94G 0.07 tolerated(0.33) possibly_damaging(0.885) TCGA-CF-A1HS-01 1 215812566 215812566 C G USH2A Missense_Mutation p.V4995L 0.04 benign(0.373) TCGA-CF-A1HS-01 1 223177617 223177617 G C DISP1 Missense_Mutation p.E960Q 0.06 tolerated(0.44) possibly_damaging(0.904) TCGA-CF-A1HS-01 1 223285979 223285979 G C TLR5 Missense_Mutation p.S132C 0.07 deleterious(0.05) possibly_damaging(0.625) TCGA-CF-A1HS-01 1 231664459 231664459 G A TSNAX 5'UTR 0.29 TCGA-CF-A1HS-01 1 234367379 234367379 T C SLC35F3 Missense_Mutation p.F167S 0.11 deleterious(0) possibly_damaging(0.882) TCGA-CF-A1HS-01 1 246754982 246754982 G C CNST Missense_Mutation p.E40Q 0.09 deleterious(0) probably_damaging(0.968) TCGA-CF-A1HS-01 1 246829073 246829073 G A CNST Missense_Mutation p.G682R 0.05 deleterious(0.01) probably_damaging(1) TCGA-CF-A1HS-01 1 248004359 248004359 C A OR11L1 Silent p.V280V 0.26 TCGA-CF-A1HS-01 1 33363895 33363895 C G TMEM54 Silent p.R14R 0.11 TCGA-CF-A1HS-01 1 40697236 40697236 C G RLF Missense_Mutation p.S332C 0.12 deleterious(0) possibly_damaging(0.594) TCGA-CF-A1HS-01 1 40981078 40981078 G T EXO5 Missense_Mutation p.D288Y 0.04 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 1 43782984 43782984 G C TIE1 Missense_Mutation p.E842Q 0.08 tolerated(0.57) probably_damaging(0.998) TCGA-CF-A1HS-01 1 47716998 47717011 CTTGGTTTAAGGTT - STIL Frame_Shift_Del p.N1222Sfs*17 0.09 TCGA-CF-A1HS-01 1 53153747 53153747 A G COA7 Missense_Mutation p.V114A 0.05 tolerated(0.23) benign(0.07) TCGA-CF-A1HS-01 1 56990007 56990007 C T PPAP2B Missense_Mutation p.E173K 0.24 tolerated(0.92) benign(0.003) TCGA-CF-A1HS-01 1 56990203 56990203 C T PPAP2B Silent p.R107R 0.20 TCGA-CF-A1HS-01 1 57480619 57480619 C A DAB1 Missense_Mutation p.D461Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-CF-A1HS-01 1 57480687 57480687 C G DAB1 Missense_Mutation p.C438S 0.12 tolerated(0.71) benign(0.268) TCGA-CF-A1HS-01 1 57480743 57480743 C A DAB1 Missense_Mutation p.Q419H 0.16 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HS-01 1 57480856 57480856 C T DAB1 Missense_Mutation p.G382S 0.15 tolerated(0.32) possibly_damaging(0.514) TCGA-CF-A1HS-01 1 57481004 57481004 C A DAB1 Silent p.V332V 0.15 TCGA-CF-A1HS-01 1 70541913 70541913 G A LRRC7 Missense_Mutation p.G1424R 0.05 tolerated(0.59) benign(0.009) TCGA-CF-A1HS-01 1 76397741 76397741 T C ASB17 Missense_Mutation p.Y79C 0.19 tolerated_low_confidence(0.13) probably_damaging(0.926) TCGA-CF-A1HS-01 1 82432119 82432119 G A LPHN2 Silent p.R708R 0.21 TCGA-CF-A1HS-01 1 9101954 9101954 G A SLC2A5 Missense_Mutation p.A154V 0.24 deleterious(0) probably_damaging(0.952) TCGA-CF-A1HS-01 1 93677790 93677790 A G CCDC18 Silent p.E543E 0.16 TCGA-CF-A1HS-01 20 2777020 2777020 A T CPXM1 Missense_Mutation p.L372H 0.11 tolerated(0.07) possibly_damaging(0.648) TCGA-CF-A1HS-01 20 31828036 31828036 C T BPIFA1 Intron 0.11 TCGA-CF-A1HS-01 20 34240440 34240440 G C RBM12 3'UTR 0.14 TCGA-CF-A1HS-01 20 39802821 39802821 G C PLCG1 Missense_Mutation p.D1235H 0.10 deleterious(0) possibly_damaging(0.633) TCGA-CF-A1HS-01 20 56186846 56186846 C G ZBP1 Missense_Mutation p.E271Q 0.14 tolerated(0.12) benign(0.096) TCGA-CF-A1HS-01 21 16336995 16336995 C G NRIP1 3'UTR 0.15 TCGA-CF-A1HS-01 21 16337647 16337647 G C NRIP1 Missense_Mutation p.S956C 0.16 tolerated(0.09) possibly_damaging(0.688) TCGA-CF-A1HS-01 21 16338392 16338392 C A NRIP1 Nonsense_Mutation p.E708* 0.15 TCGA-CF-A1HS-01 21 16340196 16340196 C T NRIP1 Missense_Mutation p.M106I 0.11 tolerated(0.05) benign(0) TCGA-CF-A1HS-01 21 16340220 16340220 C T NRIP1 Silent p.R98R 0.13 TCGA-CF-A1HS-01 21 27062211 27062211 C A JAM2 Missense_Mutation p.T56N 0.07 tolerated(0.47) benign(0.059) TCGA-CF-A1HS-01 21 30701862 30701862 C G BACH1 Missense_Mutation p.Q542E 0.19 deleterious(0) probably_damaging(0.965) TCGA-CF-A1HS-01 21 34860591 34860591 C G DNAJC28 Missense_Mutation p.K370N 0.18 deleterious(0.01) benign(0.415) TCGA-CF-A1HS-01 21 44179187 44179187 A T PDE9A Missense_Mutation p.R297W 0.08 deleterious(0) possibly_damaging(0.536) TCGA-CF-A1HS-01 21 46191250 46191250 G T UBE2G2 3'UTR 0.16 TCGA-CF-A1HS-01 22 17449260 17449260 C T GAB4 Silent p.K317K 0.22 TCGA-CF-A1HS-01 22 18075495 18075495 G C ATP6V1E1 Missense_Mutation p.P209R 0.22 deleterious(0) possibly_damaging(0.729) TCGA-CF-A1HS-01 22 30866040 30866040 T A SEC14L3 Missense_Mutation p.D67V 0.65 deleterious(0) benign(0.089) TCGA-CF-A1HS-01 22 36661303 36661303 C T APOL1 Silent p.L157L 0.16 TCGA-CF-A1HS-01 22 40066081 40066081 C T CACNA1I Silent p.F1411F 0.15 TCGA-CF-A1HS-01 22 50869673 50869673 C G PPP6R2 Silent p.L400L 0.23 TCGA-CF-A1HS-01 2 103318920 103318920 C G SLC9A2 Missense_Mutation p.R602G 0.05 deleterious(0) probably_damaging(0.998) TCGA-CF-A1HS-01 2 11944642 11944642 C G LPIN1 Missense_Mutation p.L752V 0.09 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 2 128412051 128412051 G A LIMS2 Silent p.C126C 0.29 TCGA-CF-A1HS-01 2 1480894 1480894 T A TPO Missense_Mutation p.C286S 0.28 deleterious(0) probably_damaging(0.995) TCGA-CF-A1HS-01 2 160738705 160738705 G C LY75-CD302 Missense_Mutation p.F392L 0.11 tolerated(0.68) benign(0) TCGA-CF-A1HS-01 2 171709254 171709254 G C GAD1 Missense_Mutation p.K405N 0.14 deleterious(0) probably_damaging(0.993) TCGA-CF-A1HS-01 2 174819648 174819648 G A SP3 Missense_Mutation p.S531F 0.04 deleterious(0.01) possibly_damaging(0.459) TCGA-CF-A1HS-01 2 179474576 179474576 C T TTN Missense_Mutation p.E17192K 0.09 TCGA-CF-A1HS-01 2 179595762 179595775 ACTGTATCAGTGAC - TTN Frame_Shift_Del p.V5873Lfs*13 0.15 TCGA-CF-A1HS-01 2 179629030 179629030 C G TTN Splice_Site p.X3330_splice 0.09 TCGA-CF-A1HS-01 2 190636562 190636562 G C ORMDL1 Silent p.L131L 0.12 TCGA-CF-A1HS-01 2 201436243 201436243 G C SGOL2 Missense_Mutation p.E392Q 0.15 deleterious(0.05) benign(0.444) TCGA-CF-A1HS-01 2 203420419 203420419 C G BMPR2 Silent p.L677L 0.13 TCGA-CF-A1HS-01 2 203650667 203650667 G C ICA1L Nonsense_Mutation p.S436* 0.16 TCGA-CF-A1HS-01 2 212530179 212530179 G T ERBB4 Nonsense_Mutation p.C580* 0.10 TCGA-CF-A1HS-01 2 228754637 228754637 C T DAW1 Missense_Mutation p.T60I 0.18 tolerated(0.48) benign(0.001) TCGA-CF-A1HS-01 2 233075107 233075107 T A DIS3L2 Missense_Mutation p.L399H 0.07 deleterious(0) probably_damaging(0.997) TCGA-CF-A1HS-01 2 241569480 241569480 C G GPR35 Silent p.L68L 0.11 TCGA-CF-A1HS-01 2 24929441 24929441 C T NCOA1 Missense_Mutation p.H368Y 0.07 deleterious(0.01) possibly_damaging(0.744) TCGA-CF-A1HS-01 2 26950989 26950989 C T KCNK3 Silent p.F246F 0.60 TCGA-CF-A1HS-01 2 55407837 55407837 G C CLHC1 Missense_Mutation p.S398C 0.18 tolerated(0.24) benign(0.049) TCGA-CF-A1HS-01 2 74709901 74709901 G C CCDC142 Missense_Mutation p.Q22E 0.09 tolerated_low_confidence(0.09) benign(0.04) TCGA-CF-A1HS-01 2 85097589 85097589 G A TRABD2A Silent p.R143R 0.35 TCGA-CF-A1HS-01 2 85097649 85097649 G A TRABD2A Silent p.L123L 0.40 TCGA-CF-A1HS-01 2 86437695 86437695 C T MRPL35 Silent p.L157L 0.09 TCGA-CF-A1HS-01 3 101481386 101481386 C G CEP97 Missense_Mutation p.F625L 0.12 deleterious(0.04) benign(0) TCGA-CF-A1HS-01 3 112054854 112054854 A G CD200 Missense_Mutation p.N26S 0.32 tolerated_low_confidence(1) benign(0.08) TCGA-CF-A1HS-01 3 11643348 11643348 G C VGLL4 Missense_Mutation p.N77K 0.19 tolerated(0.39) possibly_damaging(0.573) TCGA-CF-A1HS-01 3 119217621 119217621 G A TIMMDC1 Missense_Mutation p.R14K 0.12 tolerated(0.33) benign(0.003) TCGA-CF-A1HS-01 3 123452592 123452592 C G MYLK Missense_Mutation p.E417D 0.07 tolerated(0.18) benign(0.414) TCGA-CF-A1HS-01 3 141162247 141162247 T G ZBTB38 Silent p.P339P 0.05 TCGA-CF-A1HS-01 3 14212042 14212042 G T XPC Missense_Mutation p.P103Q 0.06 deleterious_low_confidence(0.04) benign(0.288) TCGA-CF-A1HS-01 3 155632331 155632331 G C GMPS Missense_Mutation p.R337T 0.08 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 3 156232888 156232888 G T KCNAB1 Splice_Site p.X249_splice 0.08 TCGA-CF-A1HS-01 3 170078501 170078501 C G SKIL Missense_Mutation p.Q128E 0.07 tolerated(0.23) possibly_damaging(0.507) TCGA-CF-A1HS-01 3 193029620 193029620 G A ATP13A5 Silent p.N810N 0.14 TCGA-CF-A1HS-01 3 37458815 37458815 G C C3orf35 Missense_Mutation p.E20Q 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.549) TCGA-CF-A1HS-01 3 42679619 42679619 C T NKTR Missense_Mutation p.S808F 0.18 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CF-A1HS-01 3 44846547 44846547 G C KIF15 Missense_Mutation p.Q572H 0.20 tolerated(0.32) benign(0.235) TCGA-CF-A1HS-01 3 52556921 52556921 C T STAB1 Missense_Mutation p.S2292L 0.07 deleterious(0.03) benign(0.346) TCGA-CF-A1HS-01 3 64644236 64644236 C A ADAMTS9 Missense_Mutation p.R304I 0.04 deleterious(0) benign(0.427) TCGA-CF-A1HS-01 3 69153637 69153637 G A ARL6IP5 Silent p.L139L 0.03 TCGA-CF-A1HS-01 3 74313531 74313531 A T CNTN3 3'UTR 0.03 TCGA-CF-A1HS-01 3 9979321 9979321 G A CRELD1 Silent p.L111L 0.21 TCGA-CF-A1HS-01 4 119444500 119444500 G A CEP170P1 RNA 0.57 TCGA-CF-A1HS-01 4 119979019 119979019 C G SYNPO2 Missense_Mutation p.S1239C 0.09 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 4 156136153 156136153 C A NPY2R Silent p.S354S 0.19 TCGA-CF-A1HS-01 4 178281777 178281777 C T NEIL3 Silent p.G527G 0.05 TCGA-CF-A1HS-01 4 6303952 6303952 C A WFS1 Missense_Mutation p.F810L 0.17 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HS-01 4 73169735 73169735 G A ADAMTS3 Missense_Mutation p.R775W 0.36 deleterious(0) possibly_damaging(0.832) TCGA-CF-A1HS-01 4 88012958 88012958 T A AFF1 Missense_Mutation p.V402D 0.38 tolerated(0.1) possibly_damaging(0.845) TCGA-CF-A1HS-01 5 112421001 112421001 C T MCC Missense_Mutation p.E469K 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-CF-A1HS-01 5 154346442 154346442 C T MRPL22 Silent p.I202I 0.17 TCGA-CF-A1HS-01 5 156565803 156565803 G C MED7 Missense_Mutation p.Q214E 0.16 tolerated(1) benign(0.004) TCGA-CF-A1HS-01 5 171523528 171523528 G T STK10 Missense_Mutation p.L303M 0.04 deleterious(0) probably_damaging(0.989) TCGA-CF-A1HS-01 5 176323070 176323070 C T HK3 Missense_Mutation p.E31K 0.24 tolerated(1) benign(0.009) TCGA-CF-A1HS-01 5 178506306 178506306 G C ZNF354C Silent p.L291L 0.39 TCGA-CF-A1HS-01 5 31317512 31317512 G C CDH6 Missense_Mutation p.D515H 0.08 deleterious(0) probably_damaging(0.947) TCGA-CF-A1HS-01 5 35910144 35910144 T A CAPSL Missense_Mutation p.M117L 0.07 tolerated(0.3) benign(0.001) TCGA-CF-A1HS-01 5 43547975 43547975 G C PAIP1 Nonsense_Mutation p.S159* 0.08 TCGA-CF-A1HS-01 5 462321 462321 G T EXOC3 Nonsense_Mutation p.E518* 0.04 TCGA-CF-A1HS-01 5 476396 476396 G T SLC9A3 Missense_Mutation p.S663Y 0.04 deleterious(0.02) possibly_damaging(0.883) TCGA-CF-A1HS-01 5 70786810 70786810 G C BDP1 Splice_Site p.X498_splice 0.21 TCGA-CF-A1HS-01 5 95743998 95743998 C G PCSK1 Silent p.T375T 0.22 TCGA-CF-A1HS-01 6 130413972 130413972 C G L3MBTL3 Nonsense_Mutation p.S534* 0.17 TCGA-CF-A1HS-01 6 130762701 130762701 C G TMEM200A Silent p.A378A 0.15 TCGA-CF-A1HS-01 6 150067104 150067104 C G NUP43 Missense_Mutation p.R72T 0.16 tolerated(0.31) benign(0.001) TCGA-CF-A1HS-01 6 152563519 152563519 C G SYNE1 Missense_Mutation p.Q6583H 0.18 benign(0.165) TCGA-CF-A1HS-01 6 17987315 17987315 G C KIF13A Missense_Mutation p.P39R 0.07 deleterious(0.02) possibly_damaging(0.88) TCGA-CF-A1HS-01 6 28093491 28093491 G C ZSCAN16 Silent p.L90L 0.08 TCGA-CF-A1HS-01 6 31431770 31431770 A G HCP5 RNA 0.42 TCGA-CF-A1HS-01 6 32014187 32014187 C T TNXB 5'Flank 0.28 TCGA-CF-A1HS-01 6 32130348 32130348 C G PPT2 Missense_Mutation p.F244L 0.23 tolerated(0.68) benign(0.005) TCGA-CF-A1HS-01 6 32800587 32800587 C A TAP2 Missense_Mutation p.E320D 0.16 tolerated(0.13) benign(0.081) TCGA-CF-A1HS-01 6 33261395 33261395 G C RGL2 Missense_Mutation p.I530M 0.21 tolerated(0.15) possibly_damaging(0.628) TCGA-CF-A1HS-01 6 35565137 35565137 C G FKBP5 Missense_Mutation p.D185H 0.08 deleterious(0) probably_damaging(0.986) TCGA-CF-A1HS-01 6 35773576 35773576 C G LHFPL5 Silent p.L43L 0.24 TCGA-CF-A1HS-01 6 36652284 36652284 G C CDKN1A Missense_Mutation p.D136H 0.10 deleterious(0.04) benign(0.346) TCGA-CF-A1HS-01 6 44216498 44216498 C G HSP90AB1 Missense_Mutation p.I44M 0.03 deleterious(0) probably_damaging(0.997) TCGA-CF-A1HS-01 6 55120033 55120033 C T HCRTR2 Missense_Mutation p.R168W 0.06 deleterious(0.03) probably_damaging(0.944) TCGA-CF-A1HS-01 6 76623906 76623906 A C MYO6 Missense_Mutation p.K1189T 0.07 deleterious(0.05) probably_damaging(0.939) TCGA-CF-A1HS-01 6 86324411 86324411 C G SYNCRIP 3'UTR 0.32 TCGA-CF-A1HS-01 6 86324442 86324442 C T SYNCRIP 3'UTR 0.25 TCGA-CF-A1HS-01 7 1024674 1024674 G A CYP2W1 Silent p.P142P 0.41 TCGA-CF-A1HS-01 7 114299626 114299626 G C FOXP2 Splice_Site p.X541_splice 0.09 TCGA-CF-A1HS-01 7 115897562 115897562 C T TES 3'UTR 0.16 TCGA-CF-A1HS-01 7 123302335 123302335 T C LMOD2 Missense_Mutation p.F232S 0.19 deleterious(0) possibly_damaging(0.765) TCGA-CF-A1HS-01 7 129110495 129110495 C G STRIP2 Nonsense_Mutation p.S628* 0.09 TCGA-CF-A1HS-01 7 142143823 142143823 G T TRBV6-7 Missense_Mutation p.P58Q 0.24 tolerated(0.1) possibly_damaging(0.823) TCGA-CF-A1HS-01 7 143141091 143141091 C T TAS2R60 Silent p.G182G 0.05 TCGA-CF-A1HS-01 7 18975441 18975441 A T HDAC9 Missense_Mutation p.H938L 0.35 deleterious(0.01) benign(0.354) TCGA-CF-A1HS-01 7 2472655 2472655 G C CHST12 Silent p.V127V 0.24 TCGA-CF-A1HS-01 7 30673444 30673444 G C GARS Missense_Mutation p.E730Q 0.19 tolerated(0.13) benign(0.178) TCGA-CF-A1HS-01 7 31793151 31793151 C T PDE1C Silent p.L719L 0.51 TCGA-CF-A1HS-01 7 33384191 33384191 A T BBS9 Splice_Site p.X426_splice 0.21 TCGA-CF-A1HS-01 7 41739709 41739709 T C INHBA Silent p.R88R 0.03 TCGA-CF-A1HS-01 7 43917868 43917868 C G URGCP Silent p.L398L 0.04 TCGA-CF-A1HS-01 7 87032471 87032471 G C ABCB4 Missense_Mutation p.L1212V 0.14 deleterious(0) probably_damaging(0.927) TCGA-CF-A1HS-01 7 92732369 92732369 C T SAMD9 Silent p.E1014E 0.45 TCGA-CF-A1HS-01 7 98547739 98547739 G C TRRAP Missense_Mutation p.G1723R 0.05 benign(0.402) TCGA-CF-A1HS-01 7 98588176 98588176 G T TRRAP Missense_Mutation p.W3234C 0.19 probably_damaging(1) TCGA-CF-A1HS-01 8 104054610 104054610 G C ATP6V1C1 Missense_Mutation p.A59P 0.04 deleterious(0.02) benign(0.21) TCGA-CF-A1HS-01 8 10555323 10555323 G A C8orf74 Silent p.P152P 0.30 TCGA-CF-A1HS-01 8 110412320 110412320 A G PKHD1L1 Missense_Mutation p.K343R 0.03 tolerated(0.16) possibly_damaging(0.505) TCGA-CF-A1HS-01 8 113358347 113358347 T G CSMD3 Missense_Mutation p.I2141L 0.21 deleterious(0.04) benign(0.243) TCGA-CF-A1HS-01 8 116599614 116599614 G C TRPS1 Missense_Mutation p.P772A 0.07 tolerated_low_confidence(0.62) benign(0.001) TCGA-CF-A1HS-01 8 121170366 121170366 C T COL14A1 Intron 0.14 TCGA-CF-A1HS-01 8 145535686 145535686 G C HSF1 Missense_Mutation p.E300Q 0.25 deleterious(0) probably_damaging(0.981) TCGA-CF-A1HS-01 8 145693255 145693255 C G KIFC2 Nonsense_Mutation p.S232* 0.06 TCGA-CF-A1HS-01 8 1728460 1728460 G A CLN8 Silent p.L196L 0.24 TCGA-CF-A1HS-01 8 35541109 35541109 C T UNC5D Silent p.D205D 0.10 TCGA-CF-A1HS-01 8 39604118 39604118 T A ADAM2 Nonsense_Mutation p.K683* 0.13 TCGA-CF-A1HS-01 8 42585836 42585836 C A CHRNB3 Missense_Mutation p.L117I 0.28 deleterious(0.01) probably_damaging(1) TCGA-CF-A1HS-01 8 49642408 49642408 C G EFCAB1 Missense_Mutation p.L114F 0.08 deleterious(0.03) possibly_damaging(0.698) TCGA-CF-A1HS-01 8 55372575 55372575 A G SOX17 3'UTR 0.09 TCGA-CF-A1HS-01 8 55534676 55534676 G T RP1 Splice_Site p.X206_splice 0.08 TCGA-CF-A1HS-01 8 56698335 56698335 A T TGS1 Missense_Mutation p.H75L 0.36 tolerated(0.68) benign(0.001) TCGA-CF-A1HS-01 8 56715061 56715061 A C TGS1 Missense_Mutation p.N632T 0.18 tolerated(0.61) benign(0.08) TCGA-CF-A1HS-01 8 6312749 6312749 G C MCPH1 Missense_Mutation p.L637F 0.18 deleterious(0.03) benign(0.01) TCGA-CF-A1HS-01 8 99961627 99961627 C A OSR2 Silent p.G149G 0.06 TCGA-CF-A1HS-01 9 112018480 112018480 G C EPB41L4B Missense_Mutation p.L289V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A1HS-01 9 117240927 117240927 G A DFNB31 Missense_Mutation p.S248L 0.41 tolerated(0.14) benign(0.007) TCGA-CF-A1HS-01 9 118949701 118949701 C G PAPPA Missense_Mutation p.F228L 0.21 tolerated(0.09) possibly_damaging(0.786) TCGA-CF-A1HS-01 9 123716141 123716141 C T C5 Missense_Mutation p.A1590T 0.18 tolerated(0.19) possibly_damaging(0.53) TCGA-CF-A1HS-01 9 130940682 130940682 C G CIZ1 Missense_Mutation p.G529A 0.08 tolerated(0.14) benign(0.049) TCGA-CF-A1HS-01 9 133927972 133927972 G C LAMC3 Silent p.L575L 0.20 TCGA-CF-A1HS-01 9 135204838 135204838 T C SETX Missense_Mutation p.K716R 0.27 tolerated(0.06) benign(0.01) TCGA-CF-A1HS-01 9 140139656 140139656 C G FAM166A Missense_Mutation p.Q179H 0.09 tolerated(0.06) benign(0.109) TCGA-CF-A1HS-01 9 140139944 140139944 C G FAM166A Missense_Mutation p.E113Q 0.13 tolerated(0.56) benign(0.328) TCGA-CF-A1HS-01 9 140907677 140907677 T G CACNA1B Missense_Mutation p.S753A 0.22 deleterious(0.04) benign(0.277) TCGA-CF-A1HS-01 9 20620762 20620762 G A MLLT3 Silent p.F28F 0.14 TCGA-CF-A1HS-01 9 37126516 37126516 G C ZCCHC7 Missense_Mutation p.E63Q 0.04 tolerated(0.3) possibly_damaging(0.886) TCGA-CF-A1HS-01 9 79890500 79890500 A C VPS13A Silent p.R867R 0.14 TCGA-CF-A1HS-01 9 80881397 80881397 C G CEP78 Missense_Mutation p.L630V 0.11 tolerated_low_confidence(0.18) probably_damaging(0.99) TCGA-CF-A1HS-01 9 84608089 84608089 A G SPATA31D1 Missense_Mutation p.M902V 0.06 tolerated(0.73) possibly_damaging(0.853) TCGA-CF-A1HS-01 9 98239043 98239043 C G PTCH1 Missense_Mutation p.E534Q 0.14 tolerated(0.42) benign(0.065) TCGA-CF-A1HS-01 X 100871632 100871632 G C ARMCX6 5'UTR 0.28 TCGA-CF-A1HS-01 X 110435399 110435399 A G PAK3 Missense_Mutation p.Q328R 0.04 tolerated(0.35) probably_damaging(0.965) TCGA-CF-A1HS-01 X 119742109 119742109 G C MCTS1 Missense_Mutation p.D99H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CF-A1HS-01 X 12939592 12939592 G A TLR8 Silent p.G811G 0.14 TCGA-CF-A1HS-01 X 134185976 134185976 C T FAM127B Missense_Mutation p.E55K 0.06 deleterious(0.02) benign(0.151) TCGA-CF-A1HS-01 X 135429691 135429691 G C GPR112 Missense_Mutation p.E1276Q 0.33 deleterious(0) possibly_damaging(0.769) TCGA-CF-A1HS-01 X 136112838 136112838 C A GPR101 Missense_Mutation p.M332I 0.13 tolerated_low_confidence(0.21) benign(0.006) TCGA-CF-A1HS-01 X 138612920 138612920 G T F9 5'UTR 0.04 TCGA-CF-A1HS-01 X 151870004 151870004 G C MAGEA6 Missense_Mutation p.E232Q 0.27 tolerated(0.08) benign(0.251) TCGA-CF-A1HS-01 X 153128148 153128148 G A L1CAM Silent p.S1248S 0.06 TCGA-CF-A1HS-01 X 154292253 154292253 T G CMC4 Missense_Mutation p.K16Q 0.06 deleterious(0.03) probably_damaging(0.91) TCGA-CF-A1HS-01 X 38534989 38534989 A T TSPAN7 Missense_Mutation p.N158Y 0.31 deleterious(0) possibly_damaging(0.863) TCGA-CF-A1HS-01 X 40496396 40496396 G A CXorf38 Missense_Mutation p.R162C 0.05 deleterious(0) probably_damaging(1) TCGA-CF-A1HS-01 X 44941860 44941861 - A KDM6A Frame_Shift_Ins p.D1062Efs*2 0.24 TCGA-CF-A1HS-01 X 48666514 48666514 G T HDAC6 Missense_Mutation p.R236L 0.39 deleterious(0) probably_damaging(0.993) TCGA-CF-A1HS-01 X 49454135 49454135 C T PAGE1 Missense_Mutation p.E102K 0.28 tolerated(0.06) benign(0) TCGA-CF-A1HS-01 X 54948648 54948648 C G TRO 5'UTR 0.31 TCGA-CF-A1HS-01 X 54949137 54949137 A G TRO Missense_Mutation p.M58V 0.44 tolerated_low_confidence(0.32) unknown(0) TCGA-CF-A1HS-01 X 54959833 54959833 G A PFKFB1 3'UTR 0.26 TCGA-CF-A1HS-01 X 8434381 8434381 C G VCX3B Missense_Mutation p.P233R 0.28 deleterious_low_confidence(0) unknown(0) TCGA-CF-A1HS-01 X 84502560 84502563 TGAA - ZNF711 5'UTR 0.21 TCGA-CF-A27C-01 10 103897653 103897653 C T PPRC1 Missense_Mutation p.S67F 0.45 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CF-A27C-01 10 104173719 104173719 C T PSD Missense_Mutation p.D454N 0.60 tolerated(0.54) possibly_damaging(0.86) TCGA-CF-A27C-01 10 23399191 23399191 G T MSRB2 Silent p.L80L 0.47 TCGA-CF-A27C-01 10 26559631 26559631 C A GAD2 Silent p.P346P 0.51 TCGA-CF-A27C-01 10 30987346 30987346 G C SVILP1 RNA 0.05 TCGA-CF-A27C-01 10 32311875 32311875 C T KIF5B Silent p.V605V 0.41 TCGA-CF-A27C-01 10 63978015 63978015 C G RTKN2 Missense_Mutation p.R276P 0.44 deleterious(0) probably_damaging(1) TCGA-CF-A27C-01 10 73053303 73053303 G C UNC5B Missense_Mutation p.K638N 0.40 deleterious(0) probably_damaging(0.977) TCGA-CF-A27C-01 10 85973981 85973981 G C CDHR1 Missense_Mutation p.K728N 0.55 deleterious_low_confidence(0.03) benign(0.274) TCGA-CF-A27C-01 10 96106204 96106204 G C NOC3L Missense_Mutation p.S456C 0.29 deleterious(0.03) possibly_damaging(0.669) TCGA-CF-A27C-01 10 99664461 99664461 G C CRTAC1 Missense_Mutation p.L321V 0.41 tolerated(0.23) benign(0.057) TCGA-CF-A27C-01 11 128782060 128782060 G C KCNJ5 Missense_Mutation p.E298Q 0.94 tolerated(0.77) probably_damaging(0.955) TCGA-CF-A27C-01 11 407866 407866 G C SIGIRR Silent p.L144L 0.95 TCGA-CF-A27C-01 11 55905037 55905037 G C OR8J3 Missense_Mutation p.S53C 0.49 deleterious(0.01) possibly_damaging(0.873) TCGA-CF-A27C-01 11 92916047 92916047 C G SLC36A4 Missense_Mutation p.S95T 0.47 deleterious(0) possibly_damaging(0.9) TCGA-CF-A27C-01 12 104476336 104476336 C T HCFC2 Missense_Mutation p.H276Y 0.33 tolerated(0.26) benign(0.285) TCGA-CF-A27C-01 12 10772796 10772796 C T STYK1 Missense_Mutation p.A406T 0.48 tolerated(0.57) benign(0.169) TCGA-CF-A27C-01 12 110906037 110906037 C G GPN3 Intron 0.53 TCGA-CF-A27C-01 12 121001667 121001667 G T RNF10 Missense_Mutation p.R529L 0.39 deleterious(0.01) benign(0.241) TCGA-CF-A27C-01 12 124885065 124885065 G - NCOR2 Frame_Shift_Del p.Q599Sfs*11 0.36 TCGA-CF-A27C-01 12 130185145 130185145 A T TMEM132D Missense_Mutation p.F60I 0.49 deleterious(0) probably_damaging(0.978) TCGA-CF-A27C-01 12 20774241 20774241 G A PDE3A Nonsense_Mutation p.W479* 0.39 TCGA-CF-A27C-01 12 23893927 23893927 C G SOX5 Missense_Mutation p.M205I 0.45 deleterious(0.02) probably_damaging(0.943) TCGA-CF-A27C-01 12 53454002 53454002 G A TENC1 Silent p.L869L 0.50 TCGA-CF-A27C-01 12 56536837 56536837 C G ESYT1 Silent p.P1018P 0.47 TCGA-CF-A27C-01 12 56554613 56554613 G A MYL6 Intron 0.61 TCGA-CF-A27C-01 13 39544479 39544479 T A STOML3 Missense_Mutation p.Y120F 0.44 tolerated(0.1) possibly_damaging(0.867) TCGA-CF-A27C-01 13 79916956 79916956 G C RBM26 Nonsense_Mutation p.S730* 0.34 TCGA-CF-A27C-01 13 90883490 90883490 C G MIR622 RNA 0.36 TCGA-CF-A27C-01 14 23398498 23398498 C T PRMT5 Missense_Mutation p.E25K 0.49 deleterious(0.01) benign(0.268) TCGA-CF-A27C-01 14 23533388 23533388 C G ACIN1 Missense_Mutation p.E899Q 0.40 possibly_damaging(0.899) TCGA-CF-A27C-01 14 51259486 51259486 C A NIN Nonsense_Mutation p.E127* 0.40 TCGA-CF-A27C-01 14 76045321 76045321 G A FLVCR2 Silent p.V2V 0.40 TCGA-CF-A27C-01 14 90455360 90455360 G C TDP1 Missense_Mutation p.E415Q 0.45 deleterious(0.03) probably_damaging(0.99) TCGA-CF-A27C-01 14 93650050 93650050 C T MOAP1 Missense_Mutation p.E180K 0.52 tolerated(0.83) benign(0.236) TCGA-CF-A27C-01 15 22382961 22382961 C T OR4N4 Silent p.I163I 0.18 TCGA-CF-A27C-01 15 32928484 32928484 G A ARHGAP11A Missense_Mutation p.E504K 0.53 deleterious(0) probably_damaging(0.945) TCGA-CF-A27C-01 15 43939559 43939559 C T CATSPER2 Silent p.L84L 0.20 TCGA-CF-A27C-01 15 44876629 44876629 G C SPG11 Missense_Mutation p.S1750C 0.44 deleterious(0.03) probably_damaging(0.938) TCGA-CF-A27C-01 15 51397222 51397222 A G TNFAIP8L3 Missense_Mutation p.L51P 0.16 deleterious_low_confidence(0) benign(0.069) TCGA-CF-A27C-01 15 51397239 51397239 G A TNFAIP8L3 Silent p.I45I 0.16 TCGA-CF-A27C-01 15 51397240 51397240 A T TNFAIP8L3 Missense_Mutation p.I45N 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-CF-A27C-01 15 58932978 58932978 G A ADAM10 Missense_Mutation p.S337L 0.43 deleterious(0.05) benign(0.033) TCGA-CF-A27C-01 15 59139599 59139599 C T FAM63B Missense_Mutation p.S491L 0.53 deleterious(0.01) possibly_damaging(0.584) TCGA-CF-A27C-01 15 63986695 63986695 G A HERC1 Nonsense_Mutation p.Q1766* 0.51 TCGA-CF-A27C-01 15 76763592 76763592 C G SCAPER Missense_Mutation p.K1013N 0.41 deleterious(0) probably_damaging(0.94) TCGA-CF-A27C-01 16 14749055 14749055 C T BFAR Silent p.L257L 0.46 TCGA-CF-A27C-01 16 29706228 29706228 G A QPRT Missense_Mutation p.R86K 0.51 tolerated(1) benign(0.001) TCGA-CF-A27C-01 16 3025757 3025757 G A PKMYT1 Silent p.F145F 0.56 TCGA-CF-A27C-01 16 3026845 3026845 G A PKMYT1 Silent p.L66L 0.50 TCGA-CF-A27C-01 16 57005235 57005235 C G CETP Missense_Mutation p.I200M 0.45 deleterious(0) possibly_damaging(0.698) TCGA-CF-A27C-01 16 57092020 57092020 C G NLRC5 Missense_Mutation p.L1264V 0.48 deleterious(0.02) benign(0.075) TCGA-CF-A27C-01 16 66603973 66603973 G A CMTM1 Silent p.L189L 0.43 TCGA-CF-A27C-01 16 67210657 67210657 C T KIAA0895L 3'UTR 0.45 TCGA-CF-A27C-01 16 70713737 70713737 C G MTSS1L Missense_Mutation p.E112Q 0.60 deleterious(0) benign(0.206) TCGA-CF-A27C-01 16 71798617 71798617 G A AP1G1 Missense_Mutation p.R254W 0.14 deleterious(0) probably_damaging(1) TCGA-CF-A27C-01 16 72821414 72821414 C T ZFHX3 Silent p.S3587S 0.43 TCGA-CF-A27C-01 16 75512780 75512780 C T CHST6 Missense_Mutation p.R316H 0.44 deleterious(0.01) benign(0.007) TCGA-CF-A27C-01 16 87446453 87446453 G C ZCCHC14 Nonsense_Mutation p.S488* 0.44 TCGA-CF-A27C-01 16 89703951 89703951 C T DPEP1 Nonsense_Mutation p.Q282* 0.53 TCGA-CF-A27C-01 17 1478943 1478943 G C SLC43A2 Silent p.L555L 0.93 TCGA-CF-A27C-01 17 25749173 25749173 G C TBC1D3P5 RNA 0.46 TCGA-CF-A27C-01 17 28791803 28791803 G C CPD Missense_Mutation p.E1372Q 0.41 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-CF-A27C-01 17 3649140 3649140 C G ITGAE Missense_Mutation p.R746T 0.88 tolerated(0.31) benign(0.026) TCGA-CF-A27C-01 17 40618453 40618453 C G ATP6V0A1 Missense_Mutation p.P42A 0.53 tolerated(0.26) possibly_damaging(0.626) TCGA-CF-A27C-01 17 4080443 4080443 G C ANKFY1 Nonsense_Mutation p.S960* 0.98 TCGA-CF-A27C-01 17 54450172 54450172 G A ANKFN1 Missense_Mutation p.R259K 0.39 tolerated(1) benign(0.001) TCGA-CF-A27C-01 17 60598163 60598163 G C TLK2 Missense_Mutation p.Q37H 0.28 tolerated_low_confidence(0.45) benign(0.017) TCGA-CF-A27C-01 17 61972839 61972839 C T CSH1 Silent p.L150L 0.32 TCGA-CF-A27C-01 17 62796727 62796727 G A PLEKHM1P RNA 0.33 TCGA-CF-A27C-01 17 65175038 65175038 G A HELZ Silent p.L389L 0.36 TCGA-CF-A27C-01 17 65882426 65882426 G C BPTF Intron 0.27 TCGA-CF-A27C-01 17 7216947 7216947 G A GPS2 Nonsense_Mutation p.Q192* 0.93 TCGA-CF-A27C-01 17 73892977 73892977 G A TRIM65 Silent p.I14I 0.33 TCGA-CF-A27C-01 17 80400480 80400480 G C HEXDC 3'UTR 0.38 TCGA-CF-A27C-01 18 19345737 19345737 C T MIB1 Silent p.I78I 0.42 TCGA-CF-A27C-01 18 19345741 19345741 C G MIB1 Missense_Mutation p.H80D 0.45 deleterious(0) possibly_damaging(0.757) TCGA-CF-A27C-01 18 22025392 22025392 G C IMPACT Missense_Mutation p.K210N 0.39 deleterious(0) possibly_damaging(0.513) TCGA-CF-A27C-01 19 10668297 10668297 G A KRI1 Silent p.I522I 0.38 TCGA-CF-A27C-01 19 11258787 11258787 G T SPC24 Silent p.L104L 0.27 TCGA-CF-A27C-01 19 12491855 12491855 G C CTD-3105H18.14 3'UTR 0.36 TCGA-CF-A27C-01 19 12739532 12739532 C T ZNF791 Silent p.L397L 0.42 TCGA-CF-A27C-01 19 13059906 13059906 G A RAD23A Silent p.G204G 0.43 TCGA-CF-A27C-01 19 20044762 20044762 G C ZNF93 Missense_Mutation p.R333T 0.74 tolerated(0.11) benign(0.198) TCGA-CF-A27C-01 19 35434903 35434903 G C ZNF30 Missense_Mutation p.E346Q 0.43 deleterious(0.05) benign(0.242) TCGA-CF-A27C-01 19 37129762 37129762 T C ZNF461 Silent p.K495K 0.17 TCGA-CF-A27C-01 19 38853103 38853103 G C CATSPERG Missense_Mutation p.E749Q 0.39 tolerated(0.36) benign(0.005) TCGA-CF-A27C-01 19 43406468 43406468 T C PSG6 3'Flank 0.10 TCGA-CF-A27C-01 19 47423517 47423517 C T ARHGAP35 Nonsense_Mutation p.R529* 0.42 TCGA-CF-A27C-01 19 49090664 49090664 C T SULT2B1 Silent p.F131F 0.43 TCGA-CF-A27C-01 19 49110158 49110158 G A SPACA4 5'UTR 0.40 TCGA-CF-A27C-01 19 54678031 54678031 C T MBOAT7 Missense_Mutation p.E376K 0.54 deleterious(0.02) benign(0.269) TCGA-CF-A27C-01 19 580761 580761 G C BSG Missense_Mutation p.K257N 0.31 deleterious(0) probably_damaging(0.995) TCGA-CF-A27C-01 19 9089752 9089752 G A MUC16 Missense_Mutation p.S688L 0.53 unknown(0) TCGA-CF-A27C-01 1 150198965 150198965 G A ANP32E Missense_Mutation p.S219L 0.44 deleterious(0.01) unknown(0) TCGA-CF-A27C-01 1 153921728 153921728 G C CRTC2 Missense_Mutation p.Q513E 0.49 tolerated(0.19) benign(0) TCGA-CF-A27C-01 1 155629952 155629952 C G YY1AP1 Missense_Mutation p.Q721H 0.51 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-CF-A27C-01 1 186034488 186034488 C T HMCN1 Silent p.H2544H 0.10 TCGA-CF-A27C-01 1 186062644 186062644 G C HMCN1 Missense_Mutation p.D3347H 0.50 possibly_damaging(0.562) TCGA-CF-A27C-01 1 19549914 19549914 G A EMC1 Silent p.I784I 0.36 TCGA-CF-A27C-01 1 207647168 207647168 G C CR2 Missense_Mutation p.Q726H 0.47 tolerated(0.24) benign(0.003) TCGA-CF-A27C-01 1 207669507 207669507 C G CR1 5'Flank 0.46 TCGA-CF-A27C-01 1 208061201 208061201 G A CD34 Missense_Mutation p.P347L 0.53 tolerated(0.05) possibly_damaging(0.597) TCGA-CF-A27C-01 1 214826232 214826232 C T CENPF Missense_Mutation p.S2741L 0.49 benign(0.009) TCGA-CF-A27C-01 1 222902115 222902115 A G BROX Missense_Mutation p.Y234C 0.44 tolerated(0.18) benign(0.004) TCGA-CF-A27C-01 1 237060354 237060354 C G MTR Nonsense_Mutation p.S1216* 0.46 TCGA-CF-A27C-01 1 237949319 237949319 T A RYR2 Silent p.S4437S 0.64 TCGA-CF-A27C-01 1 245018742 245018742 C G HNRNPU Missense_Mutation p.R779T 0.37 deleterious(0.01) unknown(0) TCGA-CF-A27C-01 1 247607346 247607346 C G NLRP3 Silent p.L914L 0.52 TCGA-CF-A27C-01 1 32384631 32384631 C G PTP4A2 Missense_Mutation p.E12D 0.44 tolerated(0.09) benign(0.004) TCGA-CF-A27C-01 1 3669321 3669321 C G CCDC27 Silent p.L92L 0.55 TCGA-CF-A27C-01 1 39550081 39550081 C T MACF1 Missense_Mutation p.P64L 0.47 probably_damaging(0.985) TCGA-CF-A27C-01 1 46085860 46085860 C G CCDC17 3'UTR 0.50 TCGA-CF-A27C-01 1 54867580 54867580 C G SSBP3 Missense_Mutation p.R77T 0.41 deleterious(0) probably_damaging(0.977) TCGA-CF-A27C-01 1 6694732 6694732 C - DNAJC11 3'UTR 0.73 TCGA-CF-A27C-01 1 6694739 6694739 C T DNAJC11 3'UTR 0.65 TCGA-CF-A27C-01 1 94964399 94964399 C G ABCD3 Missense_Mutation p.P509A 0.47 deleterious(0) probably_damaging(1) TCGA-CF-A27C-01 20 19701741 19701741 A C SLC24A3 Missense_Mutation p.N631T 0.47 deleterious(0) probably_damaging(0.999) TCGA-CF-A27C-01 20 31017811 31017811 C T ASXL1 Nonsense_Mutation p.Q225* 0.56 TCGA-CF-A27C-01 20 43940948 43940948 G A RBPJL Missense_Mutation p.G178S 0.38 tolerated(0.08) probably_damaging(0.996) TCGA-CF-A27C-01 20 47707519 47707519 C A CSE1L Missense_Mutation p.F775L 0.29 tolerated(0.07) possibly_damaging(0.666) TCGA-CF-A27C-01 20 47707529 47707529 C T CSE1L Nonsense_Mutation p.Q779* 0.30 TCGA-CF-A27C-01 20 47707558 47707558 G A CSE1L Silent p.K788K 0.31 TCGA-CF-A27C-01 20 47707561 47707561 T G CSE1L Splice_Site p.X789_splice 0.31 TCGA-CF-A27C-01 20 49576108 49576253 20:49576108-49576253 - MOCS3 large deletion p.V244Pfs*16 0.41 TCGA-CF-A27C-01 20 9376199 9376199 G A PLCB4 Missense_Mutation p.E482K 0.48 tolerated(0.52) possibly_damaging(0.802) TCGA-CF-A27C-01 21 38600636 38600636 G A DSCR3 Silent p.L182L 0.42 TCGA-CF-A27C-01 22 18031822 18031822 G C CECR2 Missense_Mutation p.D1441H 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-CF-A27C-01 22 20073687 20073687 C T DGCR8 Silent p.F67F 0.46 TCGA-CF-A27C-01 22 24717883 24717883 C T SPECC1L Missense_Mutation p.S312F 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-CF-A27C-01 22 24718351 24718351 C T SPECC1L Missense_Mutation p.S468F 0.47 deleterious(0.01) possibly_damaging(0.828) TCGA-CF-A27C-01 22 32160960 32160960 G A DEPDC5 Splice_Site p.X65_splice 0.06 TCGA-CF-A27C-01 2 100199373 100199373 C T AFF3 Missense_Mutation p.E919K 0.50 tolerated(0.08) benign(0.04) TCGA-CF-A27C-01 2 105977652 105977652 G A FHL2 3'UTR 0.51 TCGA-CF-A27C-01 2 179612753 179612753 C A TTN Intron 0.50 TCGA-CF-A27C-01 2 182413568 182413568 G A CERKL Silent p.V330V 0.41 TCGA-CF-A27C-01 2 197090585 197090585 G A HECW2 Silent p.F1309F 0.59 TCGA-CF-A27C-01 2 241726723 241726723 T C KIF1A Missense_Mutation p.D125G 0.41 deleterious(0) probably_damaging(0.982) TCGA-CF-A27C-01 2 86832395 86832395 G A RNF103 Missense_Mutation p.A210V 0.51 tolerated(1) benign(0.006) TCGA-CF-A27C-01 2 86992169 86992169 G A RMND5A Missense_Mutation p.E181K 0.46 tolerated(0.25) benign(0.145) TCGA-CF-A27C-01 2 86992260 86992260 G A RMND5A Missense_Mutation p.R211Q 0.50 tolerated(0.6) benign(0.003) TCGA-CF-A27C-01 2 97514175 97514175 C T ANKRD39 Missense_Mutation p.E139K 0.53 deleterious(0) possibly_damaging(0.755) TCGA-CF-A27C-01 3 128525358 128525358 C T RAB7A Silent p.I108I 0.47 TCGA-CF-A27C-01 3 128780662 128780662 G A GP9 Missense_Mutation p.R27H 0.48 tolerated(0.17) benign(0.017) TCGA-CF-A27C-01 3 1424976 1424976 G C CNTN6 Splice_Site p.X801_splice 0.39 TCGA-CF-A27C-01 3 151166216 151166216 C G IGSF10 Missense_Mutation p.R518T 0.49 deleterious(0.02) benign(0.284) TCGA-CF-A27C-01 3 151166508 151166508 C G IGSF10 Missense_Mutation p.D421H 0.50 deleterious(0.04) benign(0.024) TCGA-CF-A27C-01 3 77614213 77614213 G A ROBO2 Silent p.A613A 0.46 TCGA-CF-A27C-01 4 100510816 100510816 C G MTTP Nonsense_Mutation p.S137* 0.47 TCGA-CF-A27C-01 4 10100690 10100690 G A WDR1 Silent p.F101F 0.49 TCGA-CF-A27C-01 4 11401132 11401132 C T HS3ST1 Silent p.Q166Q 0.46 TCGA-CF-A27C-01 4 122831316 122831316 G A TRPC3 Silent p.F595F 0.35 TCGA-CF-A27C-01 4 123664339 123664339 G A BBS12 Missense_Mutation p.R431Q 0.52 tolerated(0.1) benign(0.01) TCGA-CF-A27C-01 4 144361407 144361407 G A GAB1 Missense_Mutation p.G486E 0.57 deleterious(0.05) probably_damaging(1) TCGA-CF-A27C-01 4 169196559 169196559 C T DDX60 Silent p.L747L 0.53 TCGA-CF-A27C-01 4 174169341 174169341 C G GALNT7 Missense_Mutation p.L113V 0.43 tolerated(0.72) benign(0.002) TCGA-CF-A27C-01 4 177143510 177143510 C G ASB5 Missense_Mutation p.G113A 0.49 deleterious(0.02) possibly_damaging(0.458) TCGA-CF-A27C-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.48 deleterious(0.01) possibly_damaging(0.594) TCGA-CF-A27C-01 4 187518864 187518864 G A FAT1 Nonsense_Mutation p.Q4114* 0.45 TCGA-CF-A27C-01 4 187630570 187630570 G A FAT1 Nonsense_Mutation p.Q138* 0.44 TCGA-CF-A27C-01 4 3416499 3416499 C T RGS12 Silent p.F737F 0.23 TCGA-CF-A27C-01 4 77675497 77675497 G C SHROOM3 Missense_Mutation p.E1287D 0.42 tolerated(0.09) benign(0.033) TCGA-CF-A27C-01 4 90034853 90034853 C G TIGD2 Nonsense_Mutation p.S243* 0.47 TCGA-CF-A27C-01 5 132200111 132200111 C T GDF9 Missense_Mutation p.E39K 0.47 tolerated(0.3) benign(0.004) TCGA-CF-A27C-01 5 140604577 140604577 C A PCDHB14 Silent p.L500L 0.51 TCGA-CF-A27C-01 5 140750327 140750327 G A PCDHGB3 Silent p.L122L 0.54 TCGA-CF-A27C-01 5 140798486 140798486 G C PCDHGB7 Missense_Mutation p.D354H 0.52 deleterious(0.01) probably_damaging(0.988) TCGA-CF-A27C-01 5 167553852 167553852 G A TENM2 Missense_Mutation p.R768H 0.65 deleterious(0) probably_damaging(0.959) TCGA-CF-A27C-01 5 171471880 171471880 C A STK10 3'UTR 0.48 TCGA-CF-A27C-01 5 171471888 171471888 A C STK10 Nonstop_Mutation p.*969Eext*69 0.46 TCGA-CF-A27C-01 5 180582343 180582343 C T OR2V2 Missense_Mutation p.P134L 0.43 deleterious(0.02) benign(0.027) TCGA-CF-A27C-01 5 180625764 180625764 G C TRIM7 Missense_Mutation p.S305C 0.40 deleterious(0.05) probably_damaging(0.969) TCGA-CF-A27C-01 5 80422929 80422929 C T RASGRF2 Missense_Mutation p.P878L 0.36 deleterious_low_confidence(0.05) probably_damaging(0.942) TCGA-CF-A27C-01 6 131971180 131971180 G A ENPP3 Silent p.K56K 0.41 TCGA-CF-A27C-01 6 132029858 132029858 G A CTAGE9 Missense_Mutation p.P767L 0.34 tolerated(0.06) benign(0.216) TCGA-CF-A27C-01 6 132891943 132891943 C A TAAR6 Silent p.L161L 0.50 TCGA-CF-A27C-01 6 149700620 149700620 G C TAB2 Silent p.L523L 0.52 TCGA-CF-A27C-01 6 17777582 17777582 C T KIF13A Missense_Mutation p.V1366I 0.11 deleterious(0.02) benign(0.022) TCGA-CF-A27C-01 6 28293802 28293802 G C ZSCAN31 3'UTR 0.41 TCGA-CF-A27C-01 6 42848633 42848633 C G RPL7L1 Missense_Mutation p.L17V 0.57 deleterious(0.01) probably_damaging(0.986) TCGA-CF-A27C-01 6 46806751 46806751 G T MEP1A Nonsense_Mutation p.E707* 0.47 TCGA-CF-A27C-01 7 103003152 103003152 C G PSMC2 Missense_Mutation p.Q148E 0.92 tolerated(0.54) benign(0.008) TCGA-CF-A27C-01 7 116849888 116849888 G A ST7 Silent p.L434L 0.11 TCGA-CF-A27C-01 7 138270566 138270566 T C TRIM24 3'UTR 0.08 TCGA-CF-A27C-01 7 27140803 27140803 C T HOXA2 Missense_Mutation p.E225K 0.52 deleterious(0.03) benign(0.11) TCGA-CF-A27C-01 7 47453569 47453569 G C TNS3 Missense_Mutation p.Q205E 0.42 deleterious(0.01) probably_damaging(0.988) TCGA-CF-A27C-01 7 50023061 50023061 G A ZPBP Missense_Mutation p.R280C 0.54 tolerated(0.05) probably_damaging(0.939) TCGA-CF-A27C-01 7 82785410 82785410 C T PCLO Missense_Mutation p.E183K 0.49 unknown(0) TCGA-CF-A27C-01 7 92116688 92116688 C T PEX1 3'UTR 0.64 TCGA-CF-A27C-01 8 118842578 118842578 G A EXT1 Missense_Mutation p.T392I 0.38 tolerated(0.71) benign(0.078) TCGA-CF-A27C-01 8 124253503 124253503 G T C8orf76 Silent p.P28P 0.50 TCGA-CF-A27C-01 8 23709043 23709043 C A STC1 Missense_Mutation p.G88V 0.35 deleterious(0) probably_damaging(1) TCGA-CF-A27C-01 8 52321351 52321351 C T PXDNL Missense_Mutation p.A945T 0.39 tolerated(0.64) benign(0.002) TCGA-CF-A27C-01 8 56675387 56675387 G C TMEM68 Silent p.L44L 0.37 TCGA-CF-A27C-01 9 137623967 137623967 C G COL5A1 Missense_Mutation p.I461M 0.97 probably_damaging(0.965) TCGA-CF-A27C-01 9 14674276 14674276 G A ZDHHC21 Silent p.V21V 0.06 TCGA-CF-A27C-01 9 15468842 15468842 C G PSIP1 Splice_Site p.X403_splice 0.87 TCGA-CF-A27C-01 9 4585317 4585317 G A SLC1A1 Missense_Mutation p.R445Q 0.33 deleterious(0) probably_damaging(1) TCGA-CF-A27C-01 9 71990748 71990748 C T FAM189A2 Nonsense_Mutation p.Q74* 0.94 TCGA-CF-A27C-01 9 98997817 98997817 G C HSD17B3 Missense_Mutation p.F286L 1.00 tolerated(0.78) benign(0.002) TCGA-CF-A27C-01 X 123197011 123197011 C T STAG2 Nonsense_Mutation p.Q593* 0.97 TCGA-CF-A27C-01 X 153205630 153205630 G A RENBP Silent p.L334L 0.98 TCGA-CF-A27C-01 X 40506339 40506339 G A CXorf38 Missense_Mutation p.H91Y 1.00 deleterious(0) probably_damaging(0.999) TCGA-CF-A27C-01 X 53631583 53631583 G C HUWE1 Missense_Mutation p.I903M 1.00 possibly_damaging(0.868) TCGA-CF-A27C-01 X 70327696 70327696 C G IL2RG Missense_Mutation p.E334Q 1.00 deleterious(0) probably_damaging(0.989) TCGA-CF-A27C-01 X 70327726 70327726 C G IL2RG Missense_Mutation p.D324H 1.00 deleterious(0.01) probably_damaging(0.984) TCGA-CF-A3MF-01 10 118314751 118314751 C T PNLIP Silent p.S211S 0.19 TCGA-CF-A3MF-01 10 99338106 99338106 G A ANKRD2 Missense_Mutation p.R127Q 0.12 tolerated(0.08) benign(0.439) TCGA-CF-A3MF-01 11 72536397 72536397 C A ATG16L2 Missense_Mutation p.S349R 0.33 tolerated(0.38) benign(0.078) TCGA-CF-A3MF-01 11 82644614 82644614 C A C11orf82 Nonsense_Mutation p.S745* 0.06 TCGA-CF-A3MF-01 12 107155161 107155161 C T RFX4 Missense_Mutation p.R717C 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CF-A3MF-01 12 133732511 133732511 C T ZNF10 Nonsense_Mutation p.Q227* 0.15 TCGA-CF-A3MF-01 16 67470804 67470804 G A HSD11B2 Silent p.L372L 0.27 TCGA-CF-A3MF-01 16 87743024 87743024 G A KLHDC4 Missense_Mutation p.R432C 0.23 deleterious(0) probably_damaging(1) TCGA-CF-A3MF-01 17 63532493 63532493 G A AXIN2 Nonsense_Mutation p.Q696* 0.06 TCGA-CF-A3MF-01 17 7906557 7906557 C T GUCY2D Silent p.C64C 0.20 TCGA-CF-A3MF-01 19 10664773 10664773 G A KRI1 Missense_Mutation p.R662W 0.21 deleterious(0) probably_damaging(0.964) TCGA-CF-A3MF-01 19 13338283 13338283 C T CACNA1A Missense_Mutation p.G1863S 0.15 probably_damaging(0.931) TCGA-CF-A3MF-01 19 19606680 19606680 G A GATAD2A Missense_Mutation p.V248I 0.23 deleterious(0.03) possibly_damaging(0.805) TCGA-CF-A3MF-01 1 78958508 78958508 G A PTGFR Missense_Mutation p.R27Q 0.08 tolerated(0.46) benign(0.023) TCGA-CF-A3MF-01 20 25002034 25002034 G T ACSS1 Missense_Mutation p.P367T 0.06 deleterious(0.04) probably_damaging(0.951) TCGA-CF-A3MF-01 20 45853033 45853033 A G ZMYND8 Missense_Mutation p.Y1019H 0.22 deleterious(0) probably_damaging(0.999) TCGA-CF-A3MF-01 20 61525841 61525841 G A DIDO1 Silent p.V832V 0.19 TCGA-CF-A3MF-01 20 62730140 62730140 G A OPRL1 Silent p.P367P 0.15 TCGA-CF-A3MF-01 22 31500334 31500334 T A SMTN Missense_Mutation p.V902E 0.18 deleterious(0) probably_damaging(0.987) TCGA-CF-A3MF-01 22 32498214 32498214 C T SLC5A1 Missense_Mutation p.P552L 0.08 deleterious(0.03) benign(0.285) TCGA-CF-A3MF-01 2 174223511 174223511 G A CDCA7 Silent p.S31S 0.43 TCGA-CF-A3MF-01 3 122642517 122642517 C T SEMA5B Missense_Mutation p.E461K 0.27 deleterious(0) probably_damaging(0.999) TCGA-CF-A3MF-01 4 2341289 2341289 C A ZFYVE28 Missense_Mutation p.V138L 0.69 tolerated(0.19) benign(0.186) TCGA-CF-A3MF-01 4 9452168 9452168 T C DEFB131 Silent p.I47I 0.17 TCGA-CF-A3MF-01 6 36652024 36652024 G A CDKN1A Nonsense_Mutation p.W49* 0.87 TCGA-CF-A3MF-01 6 37605212 37605212 C T MDGA1 Missense_Mutation p.A934T 0.29 tolerated_low_confidence(0.06) benign(0.081) TCGA-CF-A3MF-01 7 151962205 151962205 C G KMT2C Missense_Mutation p.G368R 0.04 probably_damaging(1) TCGA-CF-A3MF-01 7 44260453 44260453 C T CAMK2B Missense_Mutation p.V549I 0.17 tolerated_low_confidence(1) benign(0.312) TCGA-CF-A3MF-01 9 34107398 34107398 T C DCAF12 Missense_Mutation p.I167V 0.45 tolerated(0.84) benign(0.005) TCGA-CF-A3MF-01 X 2729397 2729397 G A XG Missense_Mutation p.V159M 0.53 deleterious(0.01) probably_damaging(0.938) TCGA-CF-A3MG-01 10 106916944 106916944 C T SORCS3 Nonsense_Mutation p.Q511* 0.43 TCGA-CF-A3MG-01 10 11060098 11060098 G A CELF2 Missense_Mutation p.E16K 0.24 tolerated_low_confidence(0.08) benign(0.012) TCGA-CF-A3MG-01 10 1405390 1405390 G A ADARB2 Missense_Mutation p.R304W 0.44 deleterious(0) probably_damaging(0.912) TCGA-CF-A3MG-01 10 26462805 26462805 C T MYO3A Silent p.F1204F 0.14 TCGA-CF-A3MG-01 10 73059082 73059082 G - UNC5B 3'UTR 0.19 TCGA-CF-A3MG-01 10 82187195 82187195 C G FAM213A Missense_Mutation p.N173K 0.57 deleterious(0) probably_damaging(0.981) TCGA-CF-A3MG-01 10 95072942 95072942 G A MYOF Silent p.H1908H 0.34 TCGA-CF-A3MG-01 11 12549479 12549479 G T PARVA 3'UTR 0.33 TCGA-CF-A3MG-01 11 17143877 17143877 C T PIK3C2A Missense_Mutation p.D839N 0.15 deleterious(0.04) possibly_damaging(0.597) TCGA-CF-A3MG-01 11 17741681 17741681 G C MYOD1 Missense_Mutation p.E118Q 0.38 deleterious(0) probably_damaging(1) TCGA-CF-A3MG-01 11 380870 380870 C G B4GALNT4 Missense_Mutation p.S972W 0.30 deleterious(0) unknown(0) TCGA-CF-A3MG-01 11 4869844 4869844 C G OR51S1 Missense_Mutation p.E199Q 0.46 deleterious(0) benign(0.049) TCGA-CF-A3MG-01 11 55904466 55904466 C A OR8J3 Silent p.S243S 0.49 TCGA-CF-A3MG-01 11 57506443 57506443 C G TMX2 Intron 0.33 TCGA-CF-A3MG-01 11 59376031 59376031 C T OSBP Missense_Mutation p.E250K 0.46 tolerated(0.06) benign(0.118) TCGA-CF-A3MG-01 11 62677566 62677566 C T CHRM1 Missense_Mutation p.R336Q 0.46 tolerated(0.59) benign(0.123) TCGA-CF-A3MG-01 11 64533041 64533041 G A SF1 Intron 0.35 TCGA-CF-A3MG-01 11 65269623 65269624 - T MALAT1 RNA 0.17 TCGA-CF-A3MG-01 11 70007754 70007754 G C ANO1 Missense_Mutation p.E603Q 0.21 deleterious(0.01) possibly_damaging(0.843) TCGA-CF-A3MG-01 11 71950871 71950871 G A PHOX2A Silent p.S259S 0.85 TCGA-CF-A3MG-01 11 788279 788279 C T CEND1 Missense_Mutation p.G100R 0.38 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-CF-A3MG-01 11 86056591 86056591 C T C11orf73 Intron 0.27 TCGA-CF-A3MG-01 12 105527601 105527601 C G KIAA1033 Missense_Mutation p.S418C 0.28 deleterious(0) probably_damaging(0.983) TCGA-CF-A3MG-01 12 110927999 110927999 T C FAM216A 3'UTR 0.17 TCGA-CF-A3MG-01 12 113596723 113596723 C G DDX54 Missense_Mutation p.G870R 0.15 tolerated_low_confidence(0.11) possibly_damaging(0.519) TCGA-CF-A3MG-01 12 121132930 121132930 C G MLEC Silent p.L208L 0.10 TCGA-CF-A3MG-01 12 123005942 123005942 C G RSRC2 Missense_Mutation p.R66T 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.731) TCGA-CF-A3MG-01 12 131490586 131490586 A C GPR133 Missense_Mutation p.H442P 0.32 tolerated(0.3) benign(0.009) TCGA-CF-A3MG-01 12 19473505 19473505 G C PLEKHA5 Missense_Mutation p.D722H 0.09 deleterious(0) possibly_damaging(0.738) TCGA-CF-A3MG-01 12 27058419 27058419 C G ASUN 3'UTR 0.08 TCGA-CF-A3MG-01 12 4920778 4920778 G C KCNA6 Missense_Mutation p.R524T 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-CF-A3MG-01 12 49315100 49315100 C G CCDC65 Missense_Mutation p.I443M 0.22 deleterious(0) probably_damaging(0.946) TCGA-CF-A3MG-01 12 52200276 52200276 G A SCN8A Missense_Mutation p.G1669E 0.11 deleterious(0) probably_damaging(0.99) TCGA-CF-A3MG-01 12 52200727 52200727 C T SCN8A Silent p.L1819L 0.48 TCGA-CF-A3MG-01 12 57918191 57918191 C G MBD6 Silent p.L35L 0.12 TCGA-CF-A3MG-01 12 67703818 67703818 G T CAND1 Nonsense_Mutation p.E1055* 0.26 TCGA-CF-A3MG-01 13 102106412 102106412 G A ITGBL1 Missense_Mutation p.E93K 0.29 tolerated(0.09) benign(0.06) TCGA-CF-A3MG-01 13 113052394 113052394 G A SPACA7 Silent p.L61L 0.21 TCGA-CF-A3MG-01 13 25021310 25021310 C T PARP4 Missense_Mutation p.M1043I 0.09 tolerated(0.16) benign(0.101) TCGA-CF-A3MG-01 13 29600135 29600135 G A MTUS2 Missense_Mutation p.D444N 0.16 tolerated(0.31) benign(0.021) TCGA-CF-A3MG-01 13 41133687 41133687 T C FOXO1 Silent p.T647T 0.41 TCGA-CF-A3MG-01 13 46039343 46039343 G A COG3 Missense_Mutation p.E58K 0.29 tolerated(0.18) benign(0.008) TCGA-CF-A3MG-01 13 95114290 95114290 G A DCT Silent p.F339F 0.21 TCGA-CF-A3MG-01 14 100157446 100157446 T C CYP46A1 Missense_Mutation p.W50R 0.38 tolerated(0.35) benign(0.115) TCGA-CF-A3MG-01 14 36064860 36064860 C G RALGAPA1 Missense_Mutation p.D1891H 0.10 deleterious(0) probably_damaging(0.999) TCGA-CF-A3MG-01 14 71443817 71443817 C T PCNX Silent p.L255L 0.29 TCGA-CF-A3MG-01 14 99967695 99967695 G C CCNK Missense_Mutation p.D174H 0.36 deleterious(0) probably_damaging(0.961) TCGA-CF-A3MG-01 15 26792968 26792968 A T GABRB3 Nonsense_Mutation p.L465* 0.38 TCGA-CF-A3MG-01 15 83776474 83776474 C T TM6SF1 Silent p.L14L 0.33 TCGA-CF-A3MG-01 15 94913372 94913372 T G MCTP2 Silent p.V515V 0.21 TCGA-CF-A3MG-01 16 14748942 14748942 G A BFAR Missense_Mutation p.E220K 0.15 deleterious(0.01) possibly_damaging(0.7) TCGA-CF-A3MG-01 16 61851482 61851482 G A CDH8 Missense_Mutation p.S393L 0.30 tolerated(0.35) benign(0.214) TCGA-CF-A3MG-01 16 68071989 68071989 G T DUS2 Silent p.R21R 0.37 TCGA-CF-A3MG-01 16 72820963 72820963 G C ZFHX3 3'UTR 0.62 TCGA-CF-A3MG-01 16 732417 732417 C T STUB1 Silent p.L280L 0.28 TCGA-CF-A3MG-01 16 848685 848685 C G GNG13 3'UTR 0.30 TCGA-CF-A3MG-01 16 89351556 89351556 C T ANKRD11 Missense_Mutation p.R465K 0.22 benign(0) TCGA-CF-A3MG-01 17 18137636 18137636 C T LLGL1 Missense_Mutation p.S255L 0.64 deleterious(0.01) probably_damaging(0.997) TCGA-CF-A3MG-01 17 42165952 42165952 G A HDAC5 Nonsense_Mutation p.Q469* 0.06 TCGA-CF-A3MG-01 17 465901 465901 G A VPS53 Silent p.A466A 0.83 TCGA-CF-A3MG-01 17 48940765 48940765 G A TOB1 Missense_Mutation p.S205F 0.14 deleterious(0) probably_damaging(0.996) TCGA-CF-A3MG-01 17 48941123 48941123 G A TOB1 Silent p.L86L 0.28 TCGA-CF-A3MG-01 18 76753543 76753543 G A SALL3 Missense_Mutation p.V518M 0.36 deleterious(0) probably_damaging(0.973) TCGA-CF-A3MG-01 19 11959669 11959669 C G ZNF439 5'UTR 0.13 TCGA-CF-A3MG-01 19 37383084 37383084 C G ZNF829 Missense_Mutation p.Q284H 0.24 tolerated(0.06) benign(0.158) TCGA-CF-A3MG-01 19 41040194 41040194 G C SPTBN4 Missense_Mutation p.D1435H 0.15 tolerated(0.18) benign(0.09) TCGA-CF-A3MG-01 19 41631523 41631523 C T CYP2F1 Silent p.F426F 0.11 TCGA-CF-A3MG-01 19 49259443 49259443 C G FGF21 5'UTR 0.20 TCGA-CF-A3MG-01 19 54692145 54692145 G A MBOAT7 Silent p.F44F 0.25 TCGA-CF-A3MG-01 19 56466904 56466904 C T NLRP8 Missense_Mutation p.R494W 0.08 deleterious(0) probably_damaging(0.948) TCGA-CF-A3MG-01 1 12402953 12402953 C T VPS13D Intron 0.20 TCGA-CF-A3MG-01 1 12463960 12463960 C G VPS13D Silent p.L3988L 0.25 TCGA-CF-A3MG-01 1 13743051 13743051 T A PRAMEF20 Silent p.A80A 0.43 TCGA-CF-A3MG-01 1 152009445 152009445 C G S100A11 5'UTR 0.30 TCGA-CF-A3MG-01 1 152286242 152286242 C A FLG Nonsense_Mutation p.E374* 0.26 TCGA-CF-A3MG-01 1 152323603 152323603 C T FLG2 Missense_Mutation p.G2220E 0.27 benign(0.087) TCGA-CF-A3MG-01 1 153309655 153309655 A G PGLYRP4 Splice_Site p.X315_splice 0.58 TCGA-CF-A3MG-01 1 155001803 155001803 G A DCST2 Silent p.L416L 0.27 TCGA-CF-A3MG-01 1 155218018 155218018 C G FAM189B Missense_Mutation p.E552D 0.50 tolerated(0.59) possibly_damaging(0.84) TCGA-CF-A3MG-01 1 155646459 155646459 C G YY1AP1 Missense_Mutation p.K206N 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-CF-A3MG-01 1 16375547 16375547 G A CLCNKB Intron 0.06 TCGA-CF-A3MG-01 1 16641859 16641859 C G FBXO42 Missense_Mutation p.E19Q 0.29 tolerated_low_confidence(0.06) benign(0.094) TCGA-CF-A3MG-01 1 166819004 166819004 G C POGK Silent p.L396L 0.24 TCGA-CF-A3MG-01 1 166974581 166974581 T - MAEL Frame_Shift_Del p.W265Gfs*6 0.31 TCGA-CF-A3MG-01 1 174210653 174210653 C T RABGAP1L Missense_Mutation p.A192V 0.30 tolerated(0.06) possibly_damaging(0.775) TCGA-CF-A3MG-01 1 21050885 21050885 G A SH2D5 Intron 0.49 TCGA-CF-A3MG-01 1 215955497 215955497 G A USH2A Missense_Mutation p.R3543C 0.15 benign(0.006) TCGA-CF-A3MG-01 1 235577915 235577915 C G TBCE Missense_Mutation p.S118C 0.43 deleterious(0) benign(0.046) TCGA-CF-A3MG-01 1 237893557 237893557 C T RYR2 Intron 0.29 TCGA-CF-A3MG-01 1 245849192 245849192 G A KIF26B Silent p.A969A 0.15 TCGA-CF-A3MG-01 1 25944326 25944326 C T MAN1C1 Missense_Mutation p.S13F 0.39 deleterious(0) possibly_damaging(0.898) TCGA-CF-A3MG-01 1 27099981 27099981 G C ARID1A Missense_Mutation p.R1287T 0.21 unknown(0) TCGA-CF-A3MG-01 1 32691917 32691917 G C EIF3I Missense_Mutation p.Q132H 0.24 tolerated(0.16) benign(0.035) TCGA-CF-A3MG-01 1 32692108 32692108 G C EIF3I Missense_Mutation p.E169Q 0.25 tolerated(0.27) benign(0.235) TCGA-CF-A3MG-01 1 40882742 40882742 C T SMAP2 Nonsense_Mutation p.Q380* 0.29 TCGA-CF-A3MG-01 1 50569641 50569641 G T ELAVL4 5'Flank 0.11 TCGA-CF-A3MG-01 1 76397769 76397769 A G ASB17 Missense_Mutation p.Y70H 0.15 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-CF-A3MG-01 1 78267138 78267138 A G FAM73A Silent p.P106P 0.31 TCGA-CF-A3MG-01 1 89598973 89598973 C G GBP7 Missense_Mutation p.E544Q 0.36 deleterious(0.04) possibly_damaging(0.575) TCGA-CF-A3MG-01 1 99771891 99771891 G C LPPR4 Missense_Mutation p.E539D 0.24 deleterious(0.04) probably_damaging(0.996) TCGA-CF-A3MG-01 20 13847482 13847482 A G SEL1L2 Missense_Mutation p.W424R 0.09 tolerated(0.53) benign(0.208) TCGA-CF-A3MG-01 20 33879831 33879831 C T FAM83C Missense_Mutation p.E93K 0.19 deleterious(0.04) possibly_damaging(0.627) TCGA-CF-A3MG-01 20 35766314 35766314 G A MROH8 Silent p.V543V 0.23 TCGA-CF-A3MG-01 20 37058338 37058338 G A SNORA71C RNA 0.25 TCGA-CF-A3MG-01 20 44578441 44578441 G A ZNF335 Nonsense_Mutation p.Q1223* 0.09 TCGA-CF-A3MG-01 20 45850114 45850114 G A ZMYND8 Nonsense_Mutation p.Q1044* 0.21 TCGA-CF-A3MG-01 21 30435690 30435690 A G CCT8 Silent p.Y308Y 0.44 TCGA-CF-A3MG-01 21 42848536 42848536 G T TMPRSS2 Missense_Mutation p.S269Y 0.14 tolerated(0.14) possibly_damaging(0.759) TCGA-CF-A3MG-01 21 45170387 45170387 G A PDXK Silent p.L157L 0.17 TCGA-CF-A3MG-01 21 45170412 45170412 G T PDXK Nonsense_Mutation p.E166* 0.20 TCGA-CF-A3MG-01 22 17072820 17072820 C T CCT8L2 Silent p.A207A 0.36 TCGA-CF-A3MG-01 22 17976471 17976471 C T CECR2 Silent p.I45I 0.14 TCGA-CF-A3MG-01 22 18918708 18918708 G A PRODH Silent p.L93L 0.28 TCGA-CF-A3MG-01 22 30403146 30403146 G C MTMR3 Missense_Mutation p.E239Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-CF-A3MG-01 22 31971305 31971305 C A SFI1 Nonsense_Mutation p.Y337* 0.17 TCGA-CF-A3MG-01 22 35660675 35660675 G C HMGXB4 Missense_Mutation p.K98N 0.29 deleterious(0) probably_damaging(0.948) TCGA-CF-A3MG-01 22 39626222 39626222 G A PDGFB Silent p.I156I 0.30 TCGA-CF-A3MG-01 22 51182532 51182532 C T ACR Silent p.L203L 0.29 TCGA-CF-A3MG-01 2 105900801 105900801 G A TGFBRAP1 Nonsense_Mutation p.Q365* 0.27 TCGA-CF-A3MG-01 2 108487551 108487551 G A RGPD4 Missense_Mutation p.E1031K 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-CF-A3MG-01 2 149861968 149861968 G A KIF5C Missense_Mutation p.R812Q 0.15 deleterious(0.01) possibly_damaging(0.709) TCGA-CF-A3MG-01 2 1652231 1652231 C A PXDN Silent p.R1107R 0.34 TCGA-CF-A3MG-01 2 1652232 1652232 C G PXDN Missense_Mutation p.R1107P 0.35 deleterious(0) probably_damaging(1) TCGA-CF-A3MG-01 2 166850686 166850686 C T SCN1A Missense_Mutation p.D1608N 0.42 deleterious(0) probably_damaging(1) TCGA-CF-A3MG-01 2 179438341 179438341 A G TTN Missense_Mutation p.V24173A 0.73 TCGA-CF-A3MG-01 2 179456530 179456530 C A TTN Missense_Mutation p.G20006C 0.21 TCGA-CF-A3MG-01 2 179501130 179501130 A G TTN Missense_Mutation p.V13775A 0.70 TCGA-CF-A3MG-01 2 179596192 179596192 G A TTN Silent p.S5767S 0.07 TCGA-CF-A3MG-01 2 202698639 202698639 G C CDK15 Silent p.L225L 0.35 TCGA-CF-A3MG-01 2 203831743 203831743 G A CARF Missense_Mutation p.R292K 0.32 tolerated(0.05) possibly_damaging(0.542) TCGA-CF-A3MG-01 2 228886493 228886493 C T SPHKAP Missense_Mutation p.E211K 0.44 deleterious(0) probably_damaging(0.999) TCGA-CF-A3MG-01 2 242373632 242373632 C T FARP2 Silent p.F309F 0.33 TCGA-CF-A3MG-01 2 242373728 242373728 C G FARP2 Missense_Mutation p.F341L 0.31 deleterious(0) probably_damaging(0.991) TCGA-CF-A3MG-01 2 63282824 63282824 C T OTX1 Silent p.S146S 0.42 TCGA-CF-A3MG-01 2 65245358 65245358 C G SLC1A4 Silent p.L396L 0.10 TCGA-CF-A3MG-01 2 69759277 69759277 C T AAK1 Silent p.L184L 0.24 TCGA-CF-A3MG-01 2 73160942 73160942 G A EMX1 Silent p.R244R 0.71 TCGA-CF-A3MG-01 2 86678259 86678259 G A KDM3A Missense_Mutation p.G126R 0.82 deleterious(0.01) probably_damaging(0.935) TCGA-CF-A3MG-01 3 13544448 13544448 G A HDAC11 Missense_Mutation p.R206H 0.10 tolerated(0.56) benign(0.082) TCGA-CF-A3MG-01 3 139085454 139085454 G A COPB2 Missense_Mutation p.P614S 0.15 tolerated(0.07) possibly_damaging(0.71) TCGA-CF-A3MG-01 3 15720866 15720866 C T ANKRD28 Missense_Mutation p.E805K 0.23 tolerated(0.11) probably_damaging(0.911) TCGA-CF-A3MG-01 3 169099220 169099220 G A MECOM Nonsense_Mutation p.Q68* 0.10 TCGA-CF-A3MG-01 3 185181390 185181390 G A MAP3K13 Missense_Mutation p.G444E 0.08 tolerated(0.15) possibly_damaging(0.862) TCGA-CF-A3MG-01 3 25761126 25761126 T C NGLY1 Missense_Mutation p.D597G 0.41 tolerated(0.09) benign(0.082) TCGA-CF-A3MG-01 3 28520378 28520378 C G ZCWPW2 Missense_Mutation p.S189C 0.15 deleterious(0) possibly_damaging(0.907) TCGA-CF-A3MG-01 3 31638349 31638349 C T STT3B Silent p.F257F 0.22 TCGA-CF-A3MG-01 3 32932410 32932410 G C TRIM71 Missense_Mutation p.E572Q 0.19 tolerated(0.46) benign(0.023) TCGA-CF-A3MG-01 3 42727789 42727789 C T KLHL40 Missense_Mutation p.R227C 0.64 deleterious(0) benign(0.444) TCGA-CF-A3MG-01 3 43122017 43122017 C A POMGNT2 Nonsense_Mutation p.E303* 0.21 TCGA-CF-A3MG-01 3 44612265 44612265 G A ZKSCAN7 Missense_Mutation p.E555K 0.12 deleterious(0.02) possibly_damaging(0.604) TCGA-CF-A3MG-01 3 47470073 47470073 C T SCAP Missense_Mutation p.V114I 0.41 deleterious(0.02) possibly_damaging(0.694) TCGA-CF-A3MG-01 3 52325777 52325777 C G GLYCTK Missense_Mutation p.L182V 0.20 deleterious(0) probably_damaging(0.993) TCGA-CF-A3MG-01 3 56026169 56026169 G A ERC2 Missense_Mutation p.A724V 0.49 deleterious(0.03) benign(0.087) TCGA-CF-A3MG-01 3 78666910 78666910 C T ROBO1 Missense_Mutation p.G1386E 0.22 tolerated(0.18) probably_damaging(0.997) TCGA-CF-A3MG-01 3 97983269 97983269 C G OR5H6 Missense_Mutation p.F47L 0.28 deleterious(0.01) benign(0.32) TCGA-CF-A3MG-01 5 101631737 101631737 G T SLCO4C1 Nonsense_Mutation p.S77* 0.10 TCGA-CF-A3MG-01 5 10450167 10450167 G C ROPN1L Missense_Mutation p.C120S 0.16 deleterious(0.02) benign(0.025) TCGA-CF-A3MG-01 5 127638767 127638767 C T FBN2 Missense_Mutation p.E1939K 0.84 tolerated(0.13) benign(0.234) TCGA-CF-A3MG-01 5 139889761 139889761 C T ANKHD1 Missense_Mutation p.R1367C 0.13 possibly_damaging(0.898) TCGA-CF-A3MG-01 5 150099298 150099298 G A DCTN4 Missense_Mutation p.P322S 0.90 tolerated(0.26) possibly_damaging(0.544) TCGA-CF-A3MG-01 5 171472003 171472003 C G STK10 Missense_Mutation p.Q930H 0.27 deleterious(0.03) benign(0.015) TCGA-CF-A3MG-01 5 176523291 176523291 C T FGFR4 Missense_Mutation p.R650C 0.24 deleterious(0) probably_damaging(0.996) TCGA-CF-A3MG-01 5 35709167 35709167 T C SPEF2 Missense_Mutation p.I928T 0.06 tolerated(0.82) benign(0) TCGA-CF-A3MG-01 5 9190451 9190451 G A SEMA5A Missense_Mutation p.R401C 0.27 deleterious(0) probably_damaging(1) TCGA-CF-A3MG-01 6 150001017 150001017 G C LATS1 Missense_Mutation p.Q863E 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-CF-A3MG-01 6 152461088 152461088 G C SYNE1 Silent p.L8485L 0.16 TCGA-CF-A3MG-01 6 31868680 31868680 C G ZBTB12 Missense_Mutation p.E135Q 0.32 tolerated(0.06) benign(0.403) TCGA-CF-A3MG-01 6 36652011 36652012 - C CDKN1A Frame_Shift_Ins p.R46Pfs*2 0.44 TCGA-CF-A3MG-01 6 43042357 43042357 C T KLC4 Intron 0.28 TCGA-CF-A3MG-01 7 128317840 128317840 G A FAM71F2 Silent p.K196K 0.51 TCGA-CF-A3MG-01 7 142626153 142626153 C A TRPV5 Nonsense_Mutation p.E184* 0.29 TCGA-CF-A3MG-01 7 151834007 151834007 G C KMT2C Silent p.L4882L 0.23 TCGA-CF-A3MG-01 7 37780343 37780343 C G GPR141 Missense_Mutation p.I116M 0.12 tolerated(0.05) possibly_damaging(0.547) TCGA-CF-A3MG-01 7 73513430 73513430 C T LIMK1 Missense_Mutation p.S157F 0.18 deleterious(0.03) benign(0.031) TCGA-CF-A3MG-01 7 75104113 75104113 G C POM121C 5'UTR 0.22 TCGA-CF-A3MG-01 8 104933968 104933968 G - RIMS2 Frame_Shift_Del p.G718Efs*3 0.30 TCGA-CF-A3MG-01 8 133726281 133726281 G C TMEM71 Missense_Mutation p.L259V 0.10 deleterious(0.05) possibly_damaging(0.713) TCGA-CF-A3MG-01 8 22033756 22033756 G A BMP1 Silent p.A121A 0.36 TCGA-CF-A3MG-01 8 22332514 22332514 G C PPP3CC Missense_Mutation p.E33Q 0.33 tolerated(0.1) benign(0.142) TCGA-CF-A3MG-01 8 38021254 38021254 C T LSM1 Silent p.L112L 0.22 TCGA-CF-A3MG-01 8 53084772 53084772 T C ST18 Missense_Mutation p.R217G 0.49 tolerated(0.27) benign(0.001) TCGA-CF-A3MG-01 8 74894563 74894563 G A TMEM70 3'UTR 0.41 TCGA-CF-A3MG-01 8 8998846 8998846 C G PPP1R3B Missense_Mutation p.E106Q 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-CF-A3MG-01 9 102590691 102590691 C A NR4A3 Missense_Mutation p.P134T 1.00 tolerated(0.37) benign(0.003) TCGA-CF-A3MG-01 9 125681289 125681289 G A ZBTB26 Nonsense_Mutation p.Q309* 0.39 TCGA-CF-A3MG-01 9 125898322 125898322 G A STRBP Nonsense_Mutation p.Q591* 0.28 TCGA-CF-A3MG-01 9 135797300 135797300 C G TSC1 Missense_Mutation p.R190P 0.80 deleterious(0.01) probably_damaging(0.995) TCGA-CF-A3MG-01 9 33464905 33464905 G C NOL6 Silent p.L917L 0.32 TCGA-CF-A3MG-01 X 129518617 129518617 C T GPR119 Missense_Mutation p.V269M 0.99 tolerated(0.09) benign(0.169) TCGA-CF-A3MG-01 X 140993970 140993970 T C MAGEC1 Silent p.F260F 0.05 TCGA-CF-A3MG-01 X 76939532 76939532 G C ATRX Missense_Mutation p.H406D 0.46 probably_damaging(0.989) TCGA-CF-A3MG-01 X 9659696 9659696 G T TBL1X Nonsense_Mutation p.E232* 0.86 TCGA-CF-A3MH-01 10 24873274 24873274 T C ARHGAP21 3'UTR 0.72 TCGA-CF-A3MH-01 10 46121709 46121709 G A ZFAND4 Missense_Mutation p.S521F 0.06 deleterious(0.01) benign(0.29) TCGA-CF-A3MH-01 11 1271849 1271849 C T MUC5B Missense_Mutation p.T4580I 0.84 unknown(0) TCGA-CF-A3MH-01 11 57798438 57798438 C T OR6Q1 Missense_Mutation p.T5I 0.03 tolerated(0.08) benign(0.002) TCGA-CF-A3MH-01 11 61133705 61133705 G A TMEM138 Intron 0.38 TCGA-CF-A3MH-01 12 1017767 1017767 A G WNK1 Missense_Mutation p.M2320V 0.63 deleterious(0.03) benign(0.313) TCGA-CF-A3MH-01 12 110391020 110391020 C T GIT2 Silent p.L373L 0.25 TCGA-CF-A3MH-01 12 40499377 40499377 G A SLC2A13 Silent p.P78P 0.47 TCGA-CF-A3MH-01 12 4835915 4835915 C G GALNT8 Silent p.L143L 0.64 TCGA-CF-A3MH-01 15 41105570 41105570 T C ZFYVE19 Silent p.D355D 0.26 TCGA-CF-A3MH-01 15 60641322 60641322 C A ANXA2 Missense_Mutation p.R322S 0.18 deleterious(0.01) possibly_damaging(0.638) TCGA-CF-A3MH-01 15 74328508 74328508 G C PML Intron 0.35 TCGA-CF-A3MH-01 15 75501097 75501097 G A C15orf39 Missense_Mutation p.R903H 0.54 deleterious(0) probably_damaging(0.974) TCGA-CF-A3MH-01 15 84651669 84651669 G C ADAMTSL3 Missense_Mutation p.D1097H 0.30 deleterious(0) possibly_damaging(0.738) TCGA-CF-A3MH-01 17 19015733 19015733 A C SNORD3D RNA 0.16 TCGA-CF-A3MH-01 17 39032712 39032712 T A KRT20 Splice_Site p.X393_splice 0.38 TCGA-CF-A3MH-01 17 4086731 4086732 - GC ANKFY1 Frame_Shift_Ins p.L681Hfs*11 0.32 TCGA-CF-A3MH-01 17 65671602 65671602 G A PITPNC1 Missense_Mutation p.R209Q 0.13 deleterious(0.03) possibly_damaging(0.761) TCGA-CF-A3MH-01 19 20728097 20728097 C T ZNF737 Silent p.K304K 0.41 TCGA-CF-A3MH-01 19 2220125 2220125 G A DOT1L Missense_Mutation p.V904M 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.557) TCGA-CF-A3MH-01 19 36050775 36050775 G A ATP4A Missense_Mutation p.R330W 0.49 deleterious(0) possibly_damaging(0.847) TCGA-CF-A3MH-01 19 38847487 38847487 T C CATSPERG Missense_Mutation p.V434A 0.43 deleterious(0) benign(0.294) TCGA-CF-A3MH-01 19 41518645 41518645 G T CYP2B6 Missense_Mutation p.A407S 0.52 tolerated(0.56) benign(0.019) TCGA-CF-A3MH-01 19 51330226 51330226 C T KLK15 Missense_Mutation p.R130H 0.44 tolerated(0.49) benign(0.081) TCGA-CF-A3MH-01 1 109777922 109777922 C T SARS Missense_Mutation p.H280Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-CF-A3MH-01 1 12726726 12726726 A T AADACL4 Missense_Mutation p.S402C 0.05 deleterious(0.05) benign(0.043) TCGA-CF-A3MH-01 1 152552263 152552263 G A LCE3D Silent p.G50G 0.10 TCGA-CF-A3MH-01 1 205210891 205210891 C T TMCC2 Missense_Mutation p.R156C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CF-A3MH-01 1 21143902 21143902 T C EIF4G3 Missense_Mutation p.I1450V 0.50 tolerated(0.13) possibly_damaging(0.809) TCGA-CF-A3MH-01 1 247607294 247607294 C T NLRP3 Missense_Mutation p.T897M 0.37 deleterious(0.01) possibly_damaging(0.893) TCGA-CF-A3MH-01 1 40928396 40928396 G C ZFP69B Missense_Mutation p.R247T 0.47 tolerated(0.37) benign(0.328) TCGA-CF-A3MH-01 1 76252784 76252784 G C RABGGTB Intron 0.28 TCGA-CF-A3MH-01 20 1099350 1099350 G A PSMF1 5'UTR 0.20 TCGA-CF-A3MH-01 21 31709534 31709534 G A KRTAP27-1 Silent p.F151F 0.45 TCGA-CF-A3MH-01 21 43519101 43519101 C T UMODL1 Missense_Mutation p.R333C 0.04 tolerated(0.15) probably_damaging(0.92) TCGA-CF-A3MH-01 21 45784025 45784025 C T TRPM2 Missense_Mutation p.H95Y 0.50 deleterious(0.01) benign(0.044) TCGA-CF-A3MH-01 22 26868322 26868322 G - HPS4 Frame_Shift_Del p.N149Kfs*26 0.28 TCGA-CF-A3MH-01 2 179394807 179394807 C G TTN Missense_Mutation p.D35471H 0.35 TCGA-CF-A3MH-01 2 179428319 179428319 C T TTN Missense_Mutation p.V27514I 0.46 TCGA-CF-A3MH-01 2 197672317 197672317 C T C2orf66 Silent p.K68K 0.36 TCGA-CF-A3MH-01 2 197975551 197975551 A T ANKRD44 Missense_Mutation p.S308R 0.04 deleterious(0.02) probably_damaging(0.933) TCGA-CF-A3MH-01 2 234183394 234183394 G T ATG16L1 Silent p.V308V 0.48 TCGA-CF-A3MH-01 3 186968087 186968087 C G MASP1 Missense_Mutation p.E348Q 0.36 tolerated(0.06) possibly_damaging(0.863) TCGA-CF-A3MH-01 4 100137347 100137347 G T ADH6 Missense_Mutation p.P31T 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A3MH-01 4 174253235 174253240 TCTTCA - HMGB2 In_Frame_Del p.D207_E208del 0.35 TCGA-CF-A3MH-01 4 187209661 187209661 G A F11 Missense_Mutation p.G591S 0.42 deleterious(0) probably_damaging(1) TCGA-CF-A3MH-01 4 1985711 1985711 G A NELFA Missense_Mutation p.A400V 0.09 tolerated(0.32) benign(0.008) TCGA-CF-A3MH-01 4 2831730 2831731 - C SH3BP2 Frame_Shift_Ins p.R426Kfs*26 0.50 TCGA-CF-A3MH-01 6 128040858 128040858 G T THEMIS Missense_Mutation p.S662R 0.47 tolerated_low_confidence(0.24) benign(0.001) TCGA-CF-A3MH-01 6 133111328 133111328 T C SLC18B1 Silent p.V89V 0.45 TCGA-CF-A3MH-01 6 32825140 32825140 G A PSMB9 Missense_Mutation p.D77N 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-CF-A3MH-01 7 63981525 63981525 T C ZNF680 3'UTR 0.42 TCGA-CF-A3MH-01 7 82451883 82451883 T C PCLO Missense_Mutation p.T4907A 0.32 unknown(0) TCGA-CF-A3MH-01 8 110448690 110448690 T C PKHD1L1 Splice_Site p.X1209_splice 0.62 TCGA-CF-A3MH-01 8 23056899 23056899 C G TNFRSF10A Missense_Mutation p.E298D 0.87 deleterious(0.02) benign(0.218) TCGA-CF-A3MH-01 8 59059268 59059268 C T FAM110B Missense_Mutation p.A160V 0.22 tolerated(0.2) benign(0.089) TCGA-CF-A3MH-01 8 68950493 68950493 G A PREX2 Missense_Mutation p.D269N 0.27 deleterious(0.01) probably_damaging(0.941) TCGA-CF-A3MH-01 8 92008912 92008912 C T TMEM55A Missense_Mutation p.M200I 0.29 tolerated(0.35) possibly_damaging(0.785) TCGA-CF-A3MH-01 8 94934837 94934837 C T PDP1 Missense_Mutation p.R209W 0.35 deleterious(0) possibly_damaging(0.77) TCGA-CF-A3MH-01 9 125154885 125154885 G T PTGS1 3'UTR 0.88 TCGA-CF-A3MH-01 X 125686659 125686659 G T DCAF12L1 5'UTR 0.69 TCGA-CF-A3MH-01 X 12905875 12905875 C T TLR7 Nonsense_Mutation p.R750* 0.11 TCGA-CF-A3MI-01 10 15863726 15863726 C T FAM188A Splice_Site p.X244_splice 0.20 TCGA-CF-A3MI-01 10 22690092 22690093 - A SPAG6 Frame_Shift_Ins p.A403Sfs*16 0.23 TCGA-CF-A3MI-01 11 121481797 121481797 C T SORL1 Missense_Mutation p.P1751L 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-CF-A3MI-01 11 122756598 122756598 C A C11orf63 Missense_Mutation p.S14Y 0.23 deleterious(0) probably_damaging(0.971) TCGA-CF-A3MI-01 11 16774368 16774368 C G C11orf58 Missense_Mutation p.S82C 0.87 tolerated(0.2) possibly_damaging(0.78) TCGA-CF-A3MI-01 11 4621770 4621770 C G TRIM68 Silent p.L398L 0.22 TCGA-CF-A3MI-01 11 48158582 48158582 T C PTPRJ Missense_Mutation p.V634A 0.21 tolerated(0.41) benign(0.256) TCGA-CF-A3MI-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.64 deleterious(0) probably_damaging(0.992) TCGA-CF-A3MI-01 11 55541619 55541619 C T OR5D13 Missense_Mutation p.R236C 0.26 tolerated(0.07) benign(0.082) TCGA-CF-A3MI-01 11 63668273 63668276 ATGA - MARK2 Frame_Shift_Del p.N305Wfs*8 0.53 TCGA-CF-A3MI-01 11 72412694 72412694 C G ARAP1 Missense_Mutation p.E768Q 0.11 deleterious(0) probably_damaging(0.93) TCGA-CF-A3MI-01 12 101801486 101801486 G C ARL1 5'UTR 0.09 TCGA-CF-A3MI-01 12 109927742 109927742 C T UBE3B Missense_Mutation p.A188V 0.07 tolerated(0.23) benign(0.006) TCGA-CF-A3MI-01 12 121882333 121882333 C A KDM2B Nonsense_Mutation p.E704* 0.12 TCGA-CF-A3MI-01 12 46245523 46245523 C T ARID2 Missense_Mutation p.T1206M 0.45 deleterious_low_confidence(0.01) benign(0.23) TCGA-CF-A3MI-01 12 52627023 52627023 G A KRT7 5'UTR 0.12 TCGA-CF-A3MI-01 12 54339012 54339012 C T HOXC13 Missense_Mutation p.S322L 0.06 tolerated(1) benign(0.041) TCGA-CF-A3MI-01 13 52742213 52742213 T C MRPS31P5 RNA 0.36 TCGA-CF-A3MI-01 15 31818621 31818621 G A OTUD7A Missense_Mutation p.T268M 0.16 deleterious(0) probably_damaging(0.912) TCGA-CF-A3MI-01 15 32929352 32929352 A T ARHGAP11A Missense_Mutation p.K793I 0.21 deleterious(0) possibly_damaging(0.482) TCGA-CF-A3MI-01 15 53994342 53994342 C T WDR72 Missense_Mutation p.E520K 0.12 deleterious(0) possibly_damaging(0.611) TCGA-CF-A3MI-01 15 59499546 59499546 C G LDHAL6B Missense_Mutation p.A136G 0.24 deleterious(0) possibly_damaging(0.703) TCGA-CF-A3MI-01 15 72972411 72972411 C G HIGD2B 5'UTR 0.10 TCGA-CF-A3MI-01 15 74637457 74637457 G A CYP11A1 Missense_Mutation p.R185C 0.05 deleterious(0) probably_damaging(0.978) TCGA-CF-A3MI-01 16 24573026 24573026 T G RBBP6 Missense_Mutation p.F314C 0.08 deleterious_low_confidence(0.01) benign(0.328) TCGA-CF-A3MI-01 16 30545871 30545871 C T ZNF747 Missense_Mutation p.V44M 0.36 deleterious(0) probably_damaging(0.999) TCGA-CF-A3MI-01 16 30794836 30794836 G A ZNF629 Silent p.F271F 0.26 TCGA-CF-A3MI-01 16 31226056 31226056 C A TRIM72 5'UTR 0.33 TCGA-CF-A3MI-01 16 3432767 3432767 C G ZSCAN32 3'UTR 0.21 TCGA-CF-A3MI-01 16 49313280 49313280 G A CBLN1 3'UTR 0.20 TCGA-CF-A3MI-01 16 71798289 71798289 C G AP1G1 Missense_Mutation p.L297F 0.16 deleterious(0) possibly_damaging(0.694) TCGA-CF-A3MI-01 17 17083384 17083384 C T MPRIP Silent p.L1009L 0.14 TCGA-CF-A3MI-01 17 17083388 17083388 A C MPRIP Missense_Mutation p.N1011H 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.575) TCGA-CF-A3MI-01 17 30696342 30696342 A G ZNF207 Missense_Mutation p.Y398C 0.44 deleterious(0) probably_damaging(0.993) TCGA-CF-A3MI-01 17 30815244 30815244 C T CDK5R1 Silent p.V202V 0.12 TCGA-CF-A3MI-01 17 59534930 59534930 G C TBX4 Missense_Mutation p.E73D 0.10 tolerated(0.32) benign(0.04) TCGA-CF-A3MI-01 17 650821 650821 G A GEMIN4 Silent p.A154A 0.08 TCGA-CF-A3MI-01 17 7094110 7094110 C T DLG4 Missense_Mutation p.E741K 0.26 deleterious(0) probably_damaging(0.93) TCGA-CF-A3MI-01 17 8449973 8449973 C T MYH10 Silent p.Q389Q 0.24 TCGA-CF-A3MI-01 19 1789016 1789016 C G ATP8B3 Silent p.L983L 0.25 TCGA-CF-A3MI-01 19 19626255 19626255 C T TSSK6 5'UTR 0.27 TCGA-CF-A3MI-01 19 53740952 53740952 C G ZNF677 Missense_Mutation p.G343A 0.12 deleterious(0) probably_damaging(0.996) TCGA-CF-A3MI-01 19 630113 630113 C T POLRMT Silent p.V83V 0.16 TCGA-CF-A3MI-01 19 9018160 9018160 T C MUC16 Missense_Mutation p.Y12593C 0.22 probably_damaging(0.918) TCGA-CF-A3MI-01 1 152058669 152058669 C G TCHHL1 Missense_Mutation p.E497Q 0.15 deleterious(0.04) possibly_damaging(0.614) TCGA-CF-A3MI-01 1 152058997 152058997 C G TCHHL1 Missense_Mutation p.M387I 0.10 tolerated(0.45) benign(0) TCGA-CF-A3MI-01 1 184787960 184787960 C T FAM129A Splice_Site p.X329_splice 0.23 TCGA-CF-A3MI-01 1 21934840 21934840 G A RAP1GAP Missense_Mutation p.R452W 0.08 deleterious(0) probably_damaging(0.993) TCGA-CF-A3MI-01 1 228462331 228462331 C T OBSCN Silent p.G2289G 0.31 TCGA-CF-A3MI-01 1 67142665 67142665 A G AL139147.1 5'UTR 0.40 TCGA-CF-A3MI-01 1 89889944 89889944 G A GBP1P1 RNA 0.30 TCGA-CF-A3MI-01 20 2413265 2413265 C T TGM6 Silent p.I699I 0.14 TCGA-CF-A3MI-01 20 4850536 4850536 C A SLC23A2 Intron 0.13 TCGA-CF-A3MI-01 22 31332583 31332583 C T MORC2 Missense_Mutation p.R489K 0.11 tolerated(1) benign(0) TCGA-CF-A3MI-01 22 42610592 42610592 G A TCF20 Silent p.S240S 0.06 TCGA-CF-A3MI-01 2 208477805 208477805 C T METTL21A Missense_Mutation p.E208K 0.22 tolerated(1) benign(0) TCGA-CF-A3MI-01 2 55791550 55791550 T A SMEK2 Missense_Mutation p.D720V 0.32 deleterious(0.02) benign(0.158) TCGA-CF-A3MI-01 3 180666136 180666136 T A FXR1 Missense_Mutation p.F91Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-CF-A3MI-01 3 48623808 48623808 C G COL7A1 Missense_Mutation p.L1169F 0.26 unknown(0) TCGA-CF-A3MI-01 3 49947848 49947848 G A MON1A Silent p.G458G 0.15 TCGA-CF-A3MI-01 3 58154337 58154337 G A FLNB Missense_Mutation p.G2488S 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-CF-A3MI-01 3 73433185 73433185 G A PDZRN3 Silent p.D844D 0.42 TCGA-CF-A3MI-01 4 128807800 128807800 C A PLK4 Missense_Mutation p.N425K 0.07 tolerated(0.16) benign(0.066) TCGA-CF-A3MI-01 4 187005188 187005188 C G TLR3 Missense_Mutation p.S783C 0.20 deleterious(0.02) possibly_damaging(0.778) TCGA-CF-A3MI-01 4 85553028 85553028 A G CDS1 Missense_Mutation p.M213V 0.18 deleterious(0.01) possibly_damaging(0.507) TCGA-CF-A3MI-01 5 140531611 140531611 C T PCDHB6 Silent p.D591D 0.40 TCGA-CF-A3MI-01 5 43556029 43556029 A T PAIP1 Missense_Mutation p.M113K 0.50 tolerated(0.06) benign(0.09) TCGA-CF-A3MI-01 6 127796588 127796588 G A SOGA3 Silent p.D861D 0.32 TCGA-CF-A3MI-01 6 146720574 146720574 C A GRM1 Missense_Mutation p.A800D 0.27 deleterious(0) probably_damaging(0.999) TCGA-CF-A3MI-01 6 147527160 147527160 A G STXBP5 Silent p.V68V 0.58 TCGA-CF-A3MI-01 6 152675920 152675920 C T SYNE1 Silent p.L3600L 0.21 TCGA-CF-A3MI-01 6 16327275 16327275 G A ATXN1 Missense_Mutation p.H423Y 0.47 tolerated(0.25) possibly_damaging(0.811) TCGA-CF-A3MI-01 6 167570440 167570440 G A GPR31 Missense_Mutation p.R294W 0.08 deleterious(0) benign(0.326) TCGA-CF-A3MI-01 6 44255546 44255546 G A TCTE1 Missense_Mutation p.T6M 0.22 deleterious_low_confidence(0.05) benign(0.211) TCGA-CF-A3MI-01 7 123269135 123269135 G A ASB15 Missense_Mutation p.V363I 0.46 tolerated(0.76) benign(0.002) TCGA-CF-A3MI-01 7 148950982 148950982 G C ZNF212 Missense_Mutation p.E322Q 0.08 tolerated(0.24) benign(0.027) TCGA-CF-A3MI-01 7 151962241 151962241 G C KMT2C Missense_Mutation p.Q356E 0.04 probably_damaging(0.983) TCGA-CF-A3MI-01 7 48682881 48682881 C T ABCA13 Intron 0.10 TCGA-CF-A3MI-01 7 57522240 57522240 G T ZNF716 Missense_Mutation p.Q38H 0.09 deleterious(0) possibly_damaging(0.667) TCGA-CF-A3MI-01 7 99798626 99798626 A T GATS 3'UTR 0.20 TCGA-CF-A3MI-01 7 99917269 99917269 T C SPDYE3 Silent p.S476S 0.27 TCGA-CF-A3MI-01 7 99956515 99971867 7:99956515-99971867 - PILRB large deletion 0.28 TCGA-CF-A3MI-01 8 143994845 143994845 G A CYP11B2 Missense_Mutation p.T326M 0.40 deleterious(0.04) possibly_damaging(0.805) TCGA-CF-A3MI-01 8 30704505 30704505 C T TEX15 Missense_Mutation p.E677K 0.27 deleterious(0.04) benign(0.067) TCGA-CF-A3MI-01 8 72755864 72755864 C T RP11-383H13.1 Silent p.C76C 0.19 TCGA-CF-A3MI-01 9 123921142 123921142 C T CNTRL Nonsense_Mutation p.Q1592* 0.83 TCGA-CF-A3MI-01 9 127637310 127637310 T C ARPC5L Silent p.I93I 0.06 TCGA-CF-A3MI-01 9 130485503 130485503 C T TTC16 Missense_Mutation p.R255C 0.87 tolerated(0.13) benign(0.049) TCGA-CF-A3MI-01 9 131669702 131669702 C T LRRC8A Silent p.L87L 0.85 TCGA-CF-A3MI-01 9 131670421 131670421 C T LRRC8A Silent p.I326I 0.84 TCGA-CF-A3MI-01 9 131671081 131671081 C G LRRC8A Silent p.L546L 0.88 TCGA-CF-A3MI-01 9 132620365 132620365 G A USP20 Missense_Mutation p.A58T 0.42 tolerated(0.24) benign(0.043) TCGA-CF-A3MI-01 9 3277363 3277363 C T RFX3 Missense_Mutation p.S317N 0.30 tolerated(0.31) benign(0.041) TCGA-CF-A3MI-01 X 123217380 123217380 C T STAG2 Nonsense_Mutation p.R1012* 1.00 TCGA-CF-A3MI-01 X 132670204 132670204 A C GPC3 Missense_Mutation p.L587R 0.97 tolerated_low_confidence(0.21) benign(0.172) TCGA-CF-A3MI-01 X 57020843 57020843 C A SPIN3 Missense_Mutation p.D180Y 0.12 deleterious(0.01) probably_damaging(1) TCGA-CF-A3MI-01 X 70836460 70836460 G A CXCR3 Missense_Mutation p.R335C 0.49 tolerated(0.05) possibly_damaging(0.827) TCGA-CF-A3MI-01 Y 6911149 6911149 G C TBL1Y Missense_Mutation p.E63Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-CF-A47S-01 10 126682434 126682437 CTGA - CTBP2 Frame_Shift_Del p.E841Pfs*9 0.22 TCGA-CF-A47S-01 10 54074410 54074410 T C DKK1 Silent p.N72N 0.49 TCGA-CF-A47S-01 11 100922293 100922293 C T PGR Missense_Mutation p.R740Q 0.54 deleterious(0.01) probably_damaging(0.952) TCGA-CF-A47S-01 12 112572632 112572632 T C TRAFD1 Silent p.F46F 0.11 TCGA-CF-A47S-01 12 1748963 1748963 C T WNT5B Missense_Mutation p.R148W 0.39 deleterious(0) probably_damaging(0.999) TCGA-CF-A47S-01 12 49259511 49259511 A T RND1 Missense_Mutation p.C14S 0.52 tolerated(0.06) probably_damaging(0.966) TCGA-CF-A47S-01 12 56233305 56233305 A G MMP19 Silent p.D247D 0.35 TCGA-CF-A47S-01 14 105259026 105259026 C T AKT1 5'UTR 0.11 TCGA-CF-A47S-01 14 24884803 24884803 G A NYNRIN Missense_Mutation p.R1283H 0.25 tolerated_low_confidence(0.08) benign(0.013) TCGA-CF-A47S-01 14 69256981 69256982 - G ZFP36L1 Frame_Shift_Ins p.E96Rfs*29 0.31 TCGA-CF-A47S-01 16 15813473 15813473 C - MYH11 Frame_Shift_Del p.S1691Tfs*72 0.11 TCGA-CF-A47S-01 16 4043448 4043448 G T ADCY9 Missense_Mutation p.P650T 0.12 tolerated(0.18) benign(0) TCGA-CF-A47S-01 16 4242840 4242840 G A SRL Missense_Mutation p.R246C 0.09 deleterious(0) probably_damaging(0.978) TCGA-CF-A47S-01 17 1637151 1637151 C T WDR81 Missense_Mutation p.P1607L 0.20 deleterious(0.01) probably_damaging(0.985) TCGA-CF-A47S-01 19 12637790 12637790 G T ZNF564 Missense_Mutation p.P378T 0.37 tolerated(0.33) benign(0.001) TCGA-CF-A47S-01 1 144931089 144931089 C T PDE4DIP Intron 0.16 TCGA-CF-A47S-01 21 37445142 37445142 G T CBR1 Nonsense_Mutation p.G266* 0.10 TCGA-CF-A47S-01 21 37445143 37445143 G T CBR1 Missense_Mutation p.G266V 0.10 deleterious(0) probably_damaging(0.998) TCGA-CF-A47S-01 2 163027485 163027485 G A FAP 3'UTR 0.52 TCGA-CF-A47S-01 2 219252542 219252542 A G SLC11A1 Missense_Mutation p.E220G 0.56 tolerated(0.06) benign(0.001) TCGA-CF-A47S-01 2 29092834 29092834 C A TRMT61B Missense_Mutation p.D104Y 0.12 deleterious(0) possibly_damaging(0.459) TCGA-CF-A47S-01 2 54839354 54839357 CCTT - SPTBN1 Frame_Shift_Del p.L120Sfs*3 0.16 TCGA-CF-A47S-01 4 170658885 170658885 G C C4orf27 Missense_Mutation p.T221S 0.08 tolerated(0.14) benign(0.189) TCGA-CF-A47S-01 5 140182317 140182317 C T PCDHA3 Missense_Mutation p.A512V 0.25 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-CF-A47S-01 5 149925000 149925000 C T NDST1 Silent p.V699V 0.05 TCGA-CF-A47S-01 6 29581118 29581118 G A GABBR1 Missense_Mutation p.R490C 0.22 deleterious(0.01) possibly_damaging(0.564) TCGA-CF-A47S-01 6 71004166 71004166 G A COL9A1 Nonsense_Mutation p.Q134* 0.26 TCGA-CF-A47S-01 7 47851438 47851438 G A PKD1L1 Nonsense_Mutation p.Q2520* 0.40 TCGA-CF-A47S-01 7 5568826 5568827 - G ACTB Frame_Shift_Ins p.L110Pfs*16 0.27 TCGA-CF-A47S-01 7 6063231 6063231 G T AIMP2 Missense_Mutation p.C291F 0.19 deleterious(0.04) benign(0.273) TCGA-CF-A47S-01 7 6063232 6063232 C G AIMP2 Missense_Mutation p.C291W 0.18 deleterious(0.01) possibly_damaging(0.649) TCGA-CF-A47S-01 7 91747927 91747927 G C CYP51A1 Silent p.L363L 0.08 TCGA-CF-A47S-01 9 131337056 131337056 C T SPTAN1 Nonsense_Mutation p.R156* 0.12 TCGA-CF-A47S-01 9 132581155 132581155 C T TOR1A Silent p.A163A 0.33 TCGA-CF-A47S-01 9 35100675 35100675 C T STOML2 Missense_Mutation p.A285T 0.10 deleterious(0) probably_damaging(0.998) TCGA-CF-A47T-01 10 106927094 106927094 G T SORCS3 Missense_Mutation p.V630F 0.44 deleterious(0.02) benign(0.359) TCGA-CF-A47T-01 11 534285 534285 C T HRAS Missense_Mutation p.G13D 0.24 deleterious(0.04) possibly_damaging(0.506) TCGA-CF-A47T-01 11 75283017 75283017 C A SERPINH1 Missense_Mutation p.F382L 0.53 deleterious(0) probably_damaging(0.995) TCGA-CF-A47T-01 12 49434785 49434789 AGCCA - KMT2D Frame_Shift_Del p.L2255Cfs*3 0.35 TCGA-CF-A47T-01 12 57490852 57490852 G A STAT6 Nonsense_Mutation p.Q742* 0.42 TCGA-CF-A47T-01 12 6078430 6078430 G A VWF Missense_Mutation p.S2559L 0.28 tolerated(1) benign(0.001) TCGA-CF-A47T-01 13 41383686 41383686 G A SLC25A15 Silent p.T263T 0.08 TCGA-CF-A47T-01 17 3433367 3433367 G A TRPV3 Missense_Mutation p.T399M 0.44 deleterious(0.05) possibly_damaging(0.785) TCGA-CF-A47T-01 17 44128062 44128062 C - KANSL1 Frame_Shift_Del p.N620Tfs*10 0.17 TCGA-CF-A47T-01 17 79872214 79872215 - A SIRT7 Frame_Shift_Ins p.A258Cfs*31 0.31 TCGA-CF-A47T-01 18 76753467 76753467 C T SALL3 Silent p.P492P 0.92 TCGA-CF-A47T-01 19 20235892 20235892 G A CTC-260E6.2 RNA 0.39 TCGA-CF-A47T-01 19 38161002 38161002 A G ZNF781 Silent p.C16C 0.20 TCGA-CF-A47T-01 19 47823367 47823367 C T C5AR1 Silent p.I111I 0.48 TCGA-CF-A47T-01 1 103405911 103405911 G A COL11A1 Missense_Mutation p.A1119V 0.32 unknown(0) TCGA-CF-A47T-01 1 160846407 160846407 G A ITLN1 3'UTR 0.34 TCGA-CF-A47T-01 1 24680895 24680896 - AGCGGTTG GRHL3 Intron 0.20 TCGA-CF-A47T-01 1 27721052 27721052 C T GPR3 Silent p.A250A 0.04 TCGA-CF-A47T-01 1 65854979 65854979 C T DNAJC6 Nonsense_Mutation p.Q412* 0.34 TCGA-CF-A47T-01 22 32587237 32587237 A G RFPL2 Missense_Mutation p.L220P 0.53 tolerated(0.32) possibly_damaging(0.828) TCGA-CF-A47T-01 2 215976354 215976354 A C ABCA12 Silent p.T43T 0.16 TCGA-CF-A47T-01 2 27445903 27445903 G A CAD Missense_Mutation p.M269I 0.51 deleterious(0.01) possibly_damaging(0.746) TCGA-CF-A47T-01 3 140407315 140407315 C T TRIM42 Silent p.N597N 0.42 TCGA-CF-A47T-01 3 52727447 52727447 A T GNL3 Missense_Mutation p.H404L 0.46 tolerated(0.08) benign(0.002) TCGA-CF-A47T-01 3 93692596 93692596 C T PROS1 5'UTR 0.48 TCGA-CF-A47T-01 4 2702235 2702237 AAG - FAM193A In_Frame_Del p.K1158del 0.33 TCGA-CF-A47T-01 4 73956393 73956393 T C ANKRD17 Missense_Mutation p.S2318G 0.45 benign(0) TCGA-CF-A47T-01 6 139488110 139488110 C T HECA Missense_Mutation p.H321Y 0.32 tolerated(0.05) possibly_damaging(0.536) TCGA-CF-A47T-01 6 168910762 168910762 C T SMOC2 Silent p.C84C 0.08 TCGA-CF-A47T-01 6 26107973 26107973 G T HIST1H1T Missense_Mutation p.P117T 0.05 deleterious(0.02) benign(0.162) TCGA-CF-A47T-01 7 100680389 100680389 G C MUC17 Missense_Mutation p.V1898L 0.45 benign(0) TCGA-CF-A47T-01 7 86991093 86991093 C G CROT Missense_Mutation p.Q186E 0.08 deleterious(0) probably_damaging(0.998) TCGA-CF-A47T-01 7 87092154 87092154 G A ABCB4 Missense_Mutation p.S69L 0.09 tolerated(0.11) benign(0.008) TCGA-CF-A47T-01 7 99695255 99695255 G A MCM7 Nonsense_Mutation p.R367* 0.05 TCGA-CF-A47T-01 X 10417481 10417481 C T MID1 Nonsense_Mutation p.W644* 0.47 TCGA-CF-A47T-01 X 105450563 105450563 C T MUM1L1 Missense_Mutation p.R380C 0.33 deleterious(0.02) probably_damaging(0.942) TCGA-CF-A47T-01 X 142717033 142717033 G A SLITRK4 Missense_Mutation p.T631M 0.36 deleterious(0) probably_damaging(0.996) TCGA-CF-A47T-01 X 151821061 151821061 G C GABRQ Missense_Mutation p.A406P 0.46 tolerated(0.16) probably_damaging(0.997) TCGA-CF-A47T-01 X 19854267 19854267 A C SH3KBP1 Silent p.G46G 0.06 TCGA-CF-A47V-01 10 101451184 101451184 G A ENTPD7 Missense_Mutation p.R251K 0.54 tolerated(1) benign(0.001) TCGA-CF-A47V-01 10 64960353 64960353 G A JMJD1C Missense_Mutation p.S1720F 0.45 deleterious(0) probably_damaging(0.999) TCGA-CF-A47V-01 10 75542709 75542709 G A CHCHD1 Intron 0.38 TCGA-CF-A47V-01 10 931589 931589 C A LARP4B Missense_Mutation p.A25S 0.36 tolerated_low_confidence(1) benign(0.003) TCGA-CF-A47V-01 10 96201736 96201736 C T TBC1D12 Missense_Mutation p.P352L 0.33 tolerated(0.18) benign(0.105) TCGA-CF-A47V-01 10 97818013 97818013 G A CCNJ 3'UTR 0.44 TCGA-CF-A47V-01 11 108356954 108356954 C T KDELC2 Missense_Mutation p.R205Q 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A47V-01 11 117351214 117351214 C T DSCAML1 Missense_Mutation p.R970Q 0.52 tolerated(0.34) possibly_damaging(0.537) TCGA-CF-A47V-01 11 120186099 120186099 C G POU2F3 Silent p.L368L 0.38 TCGA-CF-A47V-01 11 1213740 1213740 C G MUC5AC RNA 0.42 TCGA-CF-A47V-01 11 123909633 123909633 A G OR10G7 Missense_Mutation p.F26L 0.53 tolerated(0.11) benign(0.02) TCGA-CF-A47V-01 11 18159179 18159179 G A MRGPRX3 Missense_Mutation p.V144I 0.47 deleterious(0) benign(0.098) TCGA-CF-A47V-01 11 57472271 57472271 C T MED19 Missense_Mutation p.R164H 0.20 deleterious(0.02) probably_damaging(0.977) TCGA-CF-A47V-01 11 65404049 65404049 C T PCNXL3 Silent p.L1927L 0.38 TCGA-CF-A47V-01 11 70052399 70052399 G C FADD Missense_Mutation p.K149N 0.79 deleterious(0.01) probably_damaging(0.945) TCGA-CF-A47V-01 11 88323882 88323882 C G GRM5 Missense_Mutation p.G526A 0.38 tolerated(0.06) possibly_damaging(0.832) TCGA-CF-A47V-01 12 101433766 101433766 C T ANO4 Missense_Mutation p.H276Y 0.38 tolerated(1) benign(0.109) TCGA-CF-A47V-01 12 302509 302509 C T SLC6A12 Missense_Mutation p.M488I 0.51 deleterious(0.02) probably_damaging(0.989) TCGA-CF-A47V-01 12 309844 309844 G C SLC6A12 Missense_Mutation p.I228M 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A47V-01 12 52307131 52307131 G C ACVRL1 Missense_Mutation p.E104Q 0.43 tolerated(0.5) benign(0.001) TCGA-CF-A47V-01 12 56567554 56567554 G C SMARCC2 Missense_Mutation p.P526A 0.48 deleterious(0.01) possibly_damaging(0.539) TCGA-CF-A47V-01 12 57626564 57626564 C T SHMT2 Silent p.P265P 0.45 TCGA-CF-A47V-01 12 57863329 57863329 C G GLI1 Missense_Mutation p.T475S 0.30 tolerated(0.08) benign(0.079) TCGA-CF-A47V-01 12 70049190 70049190 C T BEST3 Missense_Mutation p.E502K 0.37 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-CF-A47V-01 12 76740390 76740390 C G BBS10 Missense_Mutation p.D459H 0.44 deleterious(0.02) possibly_damaging(0.45) TCGA-CF-A47V-01 12 80749524 80749524 G A OTOGL Missense_Mutation p.D1859N 0.42 deleterious(0) possibly_damaging(0.898) TCGA-CF-A47V-01 13 23914231 23914231 G C SACS Missense_Mutation p.H1262D 0.46 probably_damaging(0.989) TCGA-CF-A47V-01 13 42189183 42189183 G A VWA8 Missense_Mutation p.S1550F 0.14 tolerated(0.06) benign(0.024) TCGA-CF-A47V-01 13 49281955 49281955 C T CYSLTR2 Silent p.F334F 0.41 TCGA-CF-A47V-01 14 103933457 103933457 G C MARK3 Missense_Mutation p.E347Q 0.32 deleterious(0.01) benign(0.034) TCGA-CF-A47V-01 14 103934477 103934477 G C MARK3 Missense_Mutation p.Q406H 0.28 tolerated(0.19) benign(0.002) TCGA-CF-A47V-01 14 104492032 104492032 C T TDRD9 Silent p.V950V 0.05 TCGA-CF-A47V-01 14 21624100 21624100 G C OR5AU1 Missense_Mutation p.Q29E 0.37 tolerated_low_confidence(0.71) benign(0) TCGA-CF-A47V-01 14 23897828 23897828 G A MYH7 Nonsense_Mutation p.Q487* 0.38 TCGA-CF-A47V-01 14 57857881 57857881 A G NAA30 Missense_Mutation p.H69R 0.46 tolerated(0.9) benign(0) TCGA-CF-A47V-01 14 81609957 81609957 C T TSHR Missense_Mutation p.R519C 0.35 deleterious(0) probably_damaging(1) TCGA-CF-A47V-01 15 34130203 34130203 G A RYR3 Missense_Mutation p.D4008N 0.47 probably_damaging(0.98) TCGA-CF-A47V-01 15 44102070 44102070 C T MFAP1 Silent p.L310L 0.39 TCGA-CF-A47V-01 15 72432639 72432639 C G SENP8 3'UTR 0.27 TCGA-CF-A47V-01 15 86801215 86801215 G A AGBL1 Missense_Mutation p.D262N 0.19 deleterious(0) possibly_damaging(0.494) TCGA-CF-A47V-01 16 15758664 15758664 C G NDE1 Missense_Mutation p.S10C 0.07 deleterious(0.01) probably_damaging(0.983) TCGA-CF-A47V-01 16 57394368 57394368 G A CCL22 Missense_Mutation p.M31I 0.37 tolerated(0.06) benign(0.015) TCGA-CF-A47V-01 17 18833880 18833880 G A PRPSAP2 Missense_Mutation p.E327K 0.32 deleterious(0.03) benign(0.285) TCGA-CF-A47V-01 17 35468536 35468536 G A ACACA Silent p.F2165F 0.50 TCGA-CF-A47V-01 17 35468568 35468568 G C ACACA Missense_Mutation p.L2155V 0.45 deleterious(0) benign(0.188) TCGA-CF-A47V-01 17 7080603 7080603 C G ASGR1 Missense_Mutation p.G38A 0.53 tolerated(0.35) possibly_damaging(0.832) TCGA-CF-A47V-01 18 20581656 20581656 G C RBBP8 Missense_Mutation p.E751Q 0.40 tolerated(0.06) possibly_damaging(0.548) TCGA-CF-A47V-01 19 12058380 12058380 G C ZNF700 Missense_Mutation p.R81T 0.22 tolerated(0.12) possibly_damaging(0.585) TCGA-CF-A47V-01 19 15739367 15739367 G A CYP4F8 RNA 0.03 TCGA-CF-A47V-01 19 16687166 16687166 C T MED26 Missense_Mutation p.R492Q 0.29 tolerated(0.37) benign(0.014) TCGA-CF-A47V-01 19 17329306 17329307 - AACCAACC USE1 Intron 0.40 TCGA-CF-A47V-01 19 30934614 30934614 G A ZNF536 Missense_Mutation p.E49K 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.54) TCGA-CF-A47V-01 19 3771786 3771786 G A RAX2 5'UTR 0.40 TCGA-CF-A47V-01 19 40901223 40901223 G A PRX Silent p.A1012A 0.06 TCGA-CF-A47V-01 19 45912504 45912504 G A CD3EAP Silent p.K426K 0.40 TCGA-CF-A47V-01 19 46269245 46269245 C A SIX5 Silent p.P578P 0.10 TCGA-CF-A47V-01 19 51228548 51228548 C G CLEC11A Missense_Mutation p.R266G 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-CF-A47V-01 1 12017953 12017953 G A PLOD1 Missense_Mutation p.G266S 0.40 deleterious(0) probably_damaging(0.948) TCGA-CF-A47V-01 1 153958590 153958590 G A RAB13 Silent p.I41I 0.74 TCGA-CF-A47V-01 1 197026566 197026566 G A F13B Silent p.L279L 0.06 TCGA-CF-A47V-01 1 20827462 20827462 C G MUL1 Silent p.R260R 0.38 TCGA-CF-A47V-01 1 36372585 36372585 A C AGO1 Missense_Mutation p.I483L 0.42 tolerated(0.1) possibly_damaging(0.464) TCGA-CF-A47V-01 1 54371913 54371913 C T DIO1 Silent p.Y209Y 0.40 TCGA-CF-A47V-01 1 99422195 99422195 G A LPPR5 Missense_Mutation p.P114S 0.46 deleterious(0) probably_damaging(0.999) TCGA-CF-A47V-01 21 15872870 15872870 G C SAMSN1 Missense_Mutation p.L318V 0.34 deleterious(0) probably_damaging(0.94) TCGA-CF-A47V-01 21 47552034 47552034 C T COL6A2 Silent p.R876R 0.33 TCGA-CF-A47V-01 22 19951738 19951738 G A COMT Silent p.K177K 0.38 TCGA-CF-A47V-01 22 31795633 31795633 A G DRG1 5'UTR 0.46 TCGA-CF-A47V-01 2 11725311 11725311 C A GREB1 Missense_Mutation p.P309H 0.53 deleterious(0) probably_damaging(1) TCGA-CF-A47V-01 2 190532079 190532079 C T ASNSD1 Silent p.I407I 0.43 TCGA-CF-A47V-01 2 216946491 216946491 G A PECR 5'UTR 0.48 TCGA-CF-A47V-01 2 219647116 219647116 C T CYP27A1 Nonsense_Mutation p.Q71* 0.48 TCGA-CF-A47V-01 2 30957382 30957382 G A CAPN13 Silent p.F577F 0.22 TCGA-CF-A47V-01 2 50149252 50149252 T C NRXN1 Missense_Mutation p.M1492V 0.43 deleterious(0) possibly_damaging(0.84) TCGA-CF-A47V-01 2 69732795 69732795 G A AAK1 Silent p.P725P 0.36 TCGA-CF-A47V-01 2 75933713 75933713 C T GCFC2 Silent p.K110K 0.55 TCGA-CF-A47V-01 2 84784977 84784977 G A DNAH6 Missense_Mutation p.G574E 0.07 tolerated(1) benign(0) TCGA-CF-A47V-01 3 134670623 134670623 G A EPHB1 Silent p.Q178Q 0.38 TCGA-CF-A47V-01 3 142297509 142297509 G A ATR Missense_Mutation p.P13L 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CF-A47V-01 3 182897874 182897874 C G MCF2L2 Missense_Mutation p.E1030D 0.44 tolerated(0.43) benign(0.004) TCGA-CF-A47V-01 3 44609904 44609904 C T ZKSCAN7 Missense_Mutation p.H264Y 0.48 tolerated(1) benign(0.002) TCGA-CF-A47V-01 3 88040705 88040705 G C HTR1F Missense_Mutation p.R269T 0.37 tolerated(0.57) benign(0.004) TCGA-CF-A47V-01 4 1389587 1389587 C T CRIPAK Missense_Mutation p.R430C 0.36 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-CF-A47V-01 4 166024229 166024229 T C TMEM192 Missense_Mutation p.Q16R 0.60 tolerated(0.16) probably_damaging(0.999) TCGA-CF-A47V-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.84 deleterious(0.01) possibly_damaging(0.594) TCGA-CF-A47V-01 4 187209614 187209614 C T F11 Missense_Mutation p.S575L 0.25 deleterious(0) probably_damaging(1) TCGA-CF-A47V-01 5 137089492 137089492 C A HNRNPA0 Silent p.S88S 0.37 TCGA-CF-A47V-01 5 141053204 141053204 G A ARAP3 Silent p.L290L 0.42 TCGA-CF-A47V-01 5 175995745 175995745 G A CDHR2 Missense_Mutation p.G64D 0.46 deleterious(0.01) possibly_damaging(0.555) TCGA-CF-A47V-01 5 32126292 32126292 A T GOLPH3 3'UTR 0.04 TCGA-CF-A47V-01 6 108042009 108042009 G A SCML4 Missense_Mutation p.R291C 0.39 deleterious(0.05) benign(0.003) TCGA-CF-A47V-01 6 119221966 119221966 G A ASF1A Missense_Mutation p.E49K 0.46 deleterious(0.02) benign(0.069) TCGA-CF-A47V-01 6 168347444 168347444 A T MLLT4 Missense_Mutation p.Y1132F 0.29 deleterious(0.01) possibly_damaging(0.863) TCGA-CF-A47V-01 6 30711667 30711667 C T IER3 3'UTR 0.35 TCGA-CF-A47V-01 6 30879728 30879728 C A GTF2H4 Intron 0.56 TCGA-CF-A47V-01 6 43323836 43323836 G C ZNF318 Silent p.L412L 0.32 TCGA-CF-A47V-01 6 46977829 46977829 G C GPR110 Missense_Mutation p.Q448E 0.42 tolerated(0.19) benign(0.004) TCGA-CF-A47V-01 7 32909142 32909142 G A KBTBD2 Silent p.L563L 0.47 TCGA-CF-A47V-01 7 5567773 5567773 G A ACTB Silent p.I282I 0.48 TCGA-CF-A47V-01 7 99965039 99965039 G A PILRB 3'UTR 0.09 TCGA-CF-A47V-01 8 23003193 23003193 C A TNFRSF10D Missense_Mutation p.G242C 0.52 tolerated(0.1) benign(0.122) TCGA-CF-A47V-01 9 131348062 131348062 C A SPTAN1 Missense_Mutation p.H866N 0.77 tolerated(0.58) benign(0.001) TCGA-CF-A47V-01 9 38396319 38396319 C G ALDH1B1 Missense_Mutation p.Q192E 0.40 tolerated(0.27) probably_damaging(0.977) TCGA-CF-A47V-01 X 73064342 73064342 G A XIST RNA 0.94 TCGA-CF-A47V-01 X 82763322 82763322 C T POU3F4 5'UTR 0.94 TCGA-CF-A47V-01 X 82763491 82763491 C T POU3F4 Silent p.L53L 0.91 TCGA-CF-A47W-01 11 64537455 64537455 C A SF1 Missense_Mutation p.G279W 0.36 deleterious(0) probably_damaging(1) TCGA-CF-A47W-01 11 64537484 64537484 T G SF1 Missense_Mutation p.Q269P 0.50 tolerated(0.22) probably_damaging(0.997) TCGA-CF-A47W-01 12 129569227 129569227 G A TMEM132D Silent p.Y488Y 0.44 TCGA-CF-A47W-01 12 56211523 56211523 C A SARNP 5'UTR 0.10 TCGA-CF-A47W-01 15 66795866 66795866 G A RPL4 Missense_Mutation p.A2V 0.55 tolerated(0.12) benign(0.048) TCGA-CF-A47W-01 16 29821444 29821444 A G MAZ 3'UTR 0.20 TCGA-CF-A47W-01 17 10351273 10351273 G T MYH4 Silent p.I1609I 0.48 TCGA-CF-A47W-01 17 27822581 27822581 A G TAOK1 Missense_Mutation p.I279V 0.31 tolerated(0.29) benign(0.003) TCGA-CF-A47W-01 17 42289362 42289362 C T UBTF Missense_Mutation p.D262N 0.43 tolerated(0.17) benign(0.06) TCGA-CF-A47W-01 17 55197640 55197640 G A AKAP1 Silent p.E889E 0.35 TCGA-CF-A47W-01 17 74533613 74533613 C T CYGB Silent p.V4V 0.11 TCGA-CF-A47W-01 17 79910709 79910709 C T NOTUM 3'UTR 0.29 TCGA-CF-A47W-01 18 42529989 42529989 C T SETBP1 Silent p.S228S 0.44 TCGA-CF-A47W-01 1 161736087 161736087 T G ATF6 5'UTR 0.55 TCGA-CF-A47W-01 1 44442760 44442760 G A ATP6V0B Missense_Mutation p.V155M 0.45 deleterious(0) probably_damaging(0.999) TCGA-CF-A47W-01 20 17581417 17581417 G A DSTN Missense_Mutation p.R13H 0.49 tolerated(0.16) benign(0.001) TCGA-CF-A47W-01 2 143742675 143742675 T A KYNU Missense_Mutation p.L251Q 0.34 deleterious(0) probably_damaging(0.988) TCGA-CF-A47W-01 2 171242783 171242783 G A MYO3B Splice_Site p.X458_splice 0.62 TCGA-CF-A47W-01 2 173881076 173881076 G T RAPGEF4 Splice_Site p.X604_splice 0.49 TCGA-CF-A47W-01 2 185801237 185801237 G A ZNF804A Missense_Mutation p.V372M 0.39 tolerated(0.05) benign(0.055) TCGA-CF-A47W-01 2 219920548 219920548 G A IHH Missense_Mutation p.A206V 0.12 deleterious(0) possibly_damaging(0.519) TCGA-CF-A47W-01 2 85581494 85581494 G A RETSAT Missense_Mutation p.T46I 0.44 tolerated(0.23) benign(0.019) TCGA-CF-A47W-01 3 183903919 183903919 G A ABCF3 5'UTR 0.42 TCGA-CF-A47W-01 4 166300554 166300554 G A CPE Missense_Mutation p.E61K 0.50 tolerated(0.64) benign(0.006) TCGA-CF-A47W-01 4 176556182 176556182 G T GPM6A Silent p.A237A 0.42 TCGA-CF-A47W-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.48 deleterious(0) possibly_damaging(0.882) TCGA-CF-A47W-01 4 650710 650710 C A PDE6B Silent p.S385S 0.44 TCGA-CF-A47W-01 5 147281188 147281188 T G C5orf46 Intron 0.39 TCGA-CF-A47W-01 5 6625783 6625783 C A NSUN2 Splice_Site p.X120_splice 0.56 TCGA-CF-A47W-01 5 90087002 90087002 A T GPR98 Missense_Mutation p.N4786Y 0.47 probably_damaging(0.979) TCGA-CF-A47W-01 5 93859772 93859772 C T KIAA0825 Missense_Mutation p.E55K 0.37 tolerated(0.28) benign(0.115) TCGA-CF-A47W-01 6 155123135 155123135 C T SCAF8 Nonsense_Mutation p.Q213* 0.47 TCGA-CF-A47W-01 6 32053673 32053673 G A TNXB Missense_Mutation p.P1001L 0.42 benign(0.021) TCGA-CF-A47W-01 6 93979264 93979264 C T EPHA7 Missense_Mutation p.G522S 0.09 deleterious(0.01) possibly_damaging(0.78) TCGA-CF-A47W-01 7 150706330 150706330 G A NOS3 Missense_Mutation p.E767K 0.41 tolerated(0.44) benign(0.022) TCGA-CF-A47W-01 7 151891118 151891118 G A KMT2C Nonsense_Mutation p.Q1546* 0.43 TCGA-CF-A47W-01 7 154684290 154684290 C T DPP6 3'UTR 0.47 TCGA-CF-A47W-01 8 88886206 88886206 C T DCAF4L2 5'UTR 0.43 TCGA-CF-A47W-01 9 80943085 80943085 T A PSAT1 Missense_Mutation p.L330M 0.37 tolerated(0.11) benign(0.011) TCGA-CF-A47W-01 X 123202465 123202465 C T STAG2 Nonsense_Mutation p.Q773* 0.95 TCGA-CF-A47W-01 X 44949124 44949124 C T KDM6A Nonsense_Mutation p.Q1229* 0.97 TCGA-CF-A47X-01 10 102505888 102505888 C T PAX2 5'UTR 0.33 TCGA-CF-A47X-01 10 105801072 105801072 C T COL17A1 Missense_Mutation p.R879Q 0.14 benign(0.361) TCGA-CF-A47X-01 10 106959853 106959853 G T SORCS3 Missense_Mutation p.Q702H 0.42 deleterious(0.01) benign(0.276) TCGA-CF-A47X-01 10 112764549 112764549 G A SHOC2 Missense_Mutation p.M386I 0.50 deleterious(0.01) benign(0.033) TCGA-CF-A47X-01 10 115480908 115480908 G C CASP7 Missense_Mutation p.K109N 0.45 deleterious(0) probably_damaging(0.934) TCGA-CF-A47X-01 10 115481439 115481439 G C CASP7 Missense_Mutation p.D126H 0.47 deleterious(0) probably_damaging(0.998) TCGA-CF-A47X-01 10 12043741 12043741 C A UPF2 Missense_Mutation p.D530Y 0.22 deleterious(0) benign(0.272) TCGA-CF-A47X-01 10 120928696 120928696 G C PRDX3 Missense_Mutation p.S237C 0.13 deleterious(0) possibly_damaging(0.879) TCGA-CF-A47X-01 10 127434365 127434365 G C EDRF1 Missense_Mutation p.E894Q 0.20 tolerated(0.56) benign(0.047) TCGA-CF-A47X-01 10 128153310 128153310 G A C10orf90 Silent p.L497L 0.47 TCGA-CF-A47X-01 10 30317432 30317432 C G KIAA1462 Missense_Mutation p.E549Q 0.41 deleterious(0.04) probably_damaging(0.946) TCGA-CF-A47X-01 10 35477263 35477263 C G CREM Nonsense_Mutation p.S182* 0.49 TCGA-CF-A47X-01 10 44873229 44873229 C G CXCL12 Missense_Mutation p.E131Q 0.41 tolerated_low_confidence(0.05) possibly_damaging(0.864) TCGA-CF-A47X-01 10 47087699 47087699 G C NPY4R Missense_Mutation p.V306L 0.11 tolerated(1) benign(0.009) TCGA-CF-A47X-01 10 48371385 48371385 C T ZNF488 Missense_Mutation p.R285C 0.22 deleterious(0.02) possibly_damaging(0.839) TCGA-CF-A47X-01 10 48387932 48387932 G A RBP3 Silent p.A982A 0.04 TCGA-CF-A47X-01 10 50369477 50369477 G T C10orf128 Intron 0.46 TCGA-CF-A47X-01 10 64022431 64022431 C T RTKN2 Silent p.S70S 0.18 TCGA-CF-A47X-01 10 71142268 71142269 - TT HK1 Frame_Shift_Ins p.R436* 0.36 TCGA-CF-A47X-01 10 71835426 71835426 G A H2AFY2 Silent p.R4R 0.21 TCGA-CF-A47X-01 10 78084163 78084163 C T C10orf11 Missense_Mutation p.S146F 0.41 tolerated(0.06) benign(0.364) TCGA-CF-A47X-01 10 79793539 79793539 C T RPS24 5'UTR 0.40 TCGA-CF-A47X-01 10 88260490 88260490 C A WAPAL Missense_Mutation p.E170D 0.28 tolerated_low_confidence(0.41) benign(0.001) TCGA-CF-A47X-01 10 91405061 91405061 G C PANK1 5'UTR 0.25 TCGA-CF-A47X-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.90 TCGA-CF-A47X-01 11 1025206 1025206 G C MUC6 Silent p.L987L 0.25 TCGA-CF-A47X-01 11 111637044 111637044 C T PPP2R1B Silent p.A14A 0.31 TCGA-CF-A47X-01 11 116633796 116633796 T C BUD13 Missense_Mutation p.H170R 0.06 tolerated(0.07) benign(0.078) TCGA-CF-A47X-01 11 118344283 118344283 G A KMT2A Silent p.L803L 0.53 TCGA-CF-A47X-01 11 123909459 123909459 C A OR10G7 Missense_Mutation p.V84L 0.21 tolerated(1) benign(0.001) TCGA-CF-A47X-01 11 126208199 126208199 G A DCPS Missense_Mutation p.D181N 0.33 deleterious(0.03) benign(0.012) TCGA-CF-A47X-01 11 17156369 17156369 G C PIK3C2A Nonsense_Mutation p.S702* 0.23 TCGA-CF-A47X-01 11 47254498 47254498 C G DDB2 Nonsense_Mutation p.S197* 0.33 TCGA-CF-A47X-01 11 47256451 47256451 C T DDB2 Silent p.L282L 0.27 TCGA-CF-A47X-01 11 47600884 47600884 G A NDUFS3 Missense_Mutation p.R44H 0.20 tolerated(0.06) benign(0.015) TCGA-CF-A47X-01 11 51515938 51515938 C G OR4C46 Missense_Mutation p.I219M 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-CF-A47X-01 11 55606700 55606700 C A OR5D16 Missense_Mutation p.S158Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-CF-A47X-01 11 5626756 5626756 C T TRIM6 Silent p.L265L 0.26 TCGA-CF-A47X-01 11 59343970 59343970 G A OSBP 3'UTR 0.33 TCGA-CF-A47X-01 11 59343972 59343972 G A OSBP 3'UTR 0.33 TCGA-CF-A47X-01 11 63066419 63066419 G A SLC22A10 Silent p.L286L 0.31 TCGA-CF-A47X-01 11 64878921 64878921 C G VPS51 Silent p.L737L 0.53 TCGA-CF-A47X-01 11 66204693 66204693 C G MRPL11 Missense_Mutation p.E119Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-CF-A47X-01 11 75280054 75280054 C G SERPINH1 Silent p.L264L 0.51 TCGA-CF-A47X-01 11 75280084 75280084 C T SERPINH1 Silent p.H274H 0.53 TCGA-CF-A47X-01 11 821978 821978 C A PNPLA2 Missense_Mutation p.F147L 0.25 deleterious(0) probably_damaging(0.984) TCGA-CF-A47X-01 11 82879569 82879569 C G PCF11 Nonsense_Mutation p.S731* 0.30 TCGA-CF-A47X-01 11 85692951 85692951 C T PICALM Missense_Mutation p.D538N 0.28 tolerated(1) benign(0.016) TCGA-CF-A47X-01 11 985535 985535 G C AP2A2 Missense_Mutation p.K305N 0.62 deleterious(0.04) benign(0.328) TCGA-CF-A47X-01 12 106461677 106461677 T C NUAK1 Missense_Mutation p.I297V 0.28 tolerated(0.33) benign(0.036) TCGA-CF-A47X-01 12 110969355 110969355 C T RAD9B Intron 0.30 TCGA-CF-A47X-01 12 121600261 121600261 G A P2RX7 Silent p.G157G 0.62 TCGA-CF-A47X-01 12 122687887 122687887 C G LRRC43 Missense_Mutation p.I623M 0.20 tolerated(0.38) benign(0.004) TCGA-CF-A47X-01 12 124408399 124408399 G C DNAH10 Missense_Mutation p.D3748H 0.23 possibly_damaging(0.841) TCGA-CF-A47X-01 12 124408911 124408911 G A DNAH10 Missense_Mutation p.E3782K 0.71 benign(0.012) TCGA-CF-A47X-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.57 deleterious(0) benign(0.361) TCGA-CF-A47X-01 12 31600583 31600583 G A DENND5B Missense_Mutation p.P584S 0.28 tolerated(0.2) possibly_damaging(0.881) TCGA-CF-A47X-01 12 33592576 33592576 G C SYT10 5'UTR 0.21 TCGA-CF-A47X-01 12 5021486 5021486 C A KCNA1 Silent p.I314I 0.20 TCGA-CF-A47X-01 12 50472321 50472321 C G ASIC1 Missense_Mutation p.L319V 0.47 tolerated(0.79) benign(0.121) TCGA-CF-A47X-01 12 52567471 52567471 C G KRT80 Silent p.L248L 0.58 TCGA-CF-A47X-01 12 53186507 53186507 G A KRT3 Silent p.T337T 0.25 TCGA-CF-A47X-01 12 57109759 57109759 C G NACA Missense_Mutation p.G699A 0.21 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-CF-A47X-01 12 76740826 76740826 C T BBS10 Silent p.V313V 0.74 TCGA-CF-A47X-01 12 96271997 96271997 C T CCDC38 Missense_Mutation p.D424N 0.25 deleterious(0.01) possibly_damaging(0.71) TCGA-CF-A47X-01 12 9875098 9875098 C T CLECL1 3'UTR 0.44 TCGA-CF-A47X-01 13 108881641 108881641 C T ABHD13 Silent p.L25L 0.25 TCGA-CF-A47X-01 13 21383360 21383369 GCAGTCTATT - XPO4 Splice_Site p.X451_splice 0.24 TCGA-CF-A47X-01 13 21721003 21721003 G C SAP18 Missense_Mutation p.R100T 0.60 deleterious(0) possibly_damaging(0.678) TCGA-CF-A47X-01 13 28240183 28240183 G A POLR1D 3'UTR 0.31 TCGA-CF-A47X-01 13 32836608 32836608 C T FRY Missense_Mutation p.S2592L 0.38 tolerated_low_confidence(0.4) benign(0.001) TCGA-CF-A47X-01 13 33704111 33704111 G A STARD13 Missense_Mutation p.P235S 0.08 tolerated(0.98) benign(0) TCGA-CF-A47X-01 13 38164578 38164578 C T POSTN Silent p.E124E 0.32 TCGA-CF-A47X-01 13 38164584 38164584 C G POSTN Silent p.L122L 0.32 TCGA-CF-A47X-01 13 67801675 67801675 T C PCDH9 Missense_Mutation p.K300E 0.55 deleterious(0) possibly_damaging(0.838) TCGA-CF-A47X-01 13 73468075 73468076 - A PIBF1 Frame_Shift_Ins p.L495Ifs*10 0.26 TCGA-CF-A47X-01 13 80911336 80911336 C T SPRY2 Missense_Mutation p.E169K 0.45 tolerated(0.18) benign(0.129) TCGA-CF-A47X-01 13 96506724 96506724 C A UGGT2 Silent p.V1338V 0.17 TCGA-CF-A47X-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.46 TCGA-CF-A47X-01 14 100847571 100847571 C G WDR25 Missense_Mutation p.Q104E 0.27 tolerated(1) benign(0) TCGA-CF-A47X-01 14 102548071 102548071 G A HSP90AA1 Missense_Mutation p.S848L 0.58 deleterious_low_confidence(0) unknown(0) TCGA-CF-A47X-01 14 105418899 105418899 G T AHNAK2 Missense_Mutation p.S963R 0.42 possibly_damaging(0.808) TCGA-CF-A47X-01 14 22555000 22555000 G C TRAV23DV6 Missense_Mutation p.Q42H 0.15 deleterious(0.05) benign(0.334) TCGA-CF-A47X-01 14 24653038 24653038 C T IPO4 Missense_Mutation p.E646K 0.58 tolerated(0.55) benign(0.231) TCGA-CF-A47X-01 14 31790808 31790808 C T HEATR5A Missense_Mutation p.R1289H 0.33 deleterious(0) probably_damaging(0.989) TCGA-CF-A47X-01 14 37838803 37838803 G T MIPOL1 Nonsense_Mutation p.E304* 0.59 TCGA-CF-A47X-01 14 50877192 50877192 C G CDKL1 RNA 0.24 TCGA-CF-A47X-01 14 70517820 70517820 G A SLC8A3 Missense_Mutation p.T679M 0.27 deleterious(0) probably_damaging(0.951) TCGA-CF-A47X-01 14 93117999 93117999 C T RIN3 Missense_Mutation p.P202L 0.67 tolerated(0.71) unknown(0) TCGA-CF-A47X-01 14 93172958 93172958 G C LGMN Missense_Mutation p.S354C 0.39 deleterious(0.02) possibly_damaging(0.469) TCGA-CF-A47X-01 14 97009162 97009162 G C PAPOLA Missense_Mutation p.K407N 0.31 deleterious(0.01) benign(0.168) TCGA-CF-A47X-01 15 101605692 101605692 G A LRRK1 Missense_Mutation p.E1684K 0.54 tolerated(0.09) benign(0.066) TCGA-CF-A47X-01 15 25442528 25442528 G C SNORD115-14 3'Flank 0.43 TCGA-CF-A47X-01 15 41377721 41377721 G A INO80 Missense_Mutation p.S240F 0.22 tolerated(0.05) benign(0.054) TCGA-CF-A47X-01 15 42133274 42133274 G C PLA2G4B Missense_Mutation p.E356Q 0.26 deleterious(0.01) possibly_damaging(0.865) TCGA-CF-A47X-01 15 43476672 43476672 T G TMEM62 Missense_Mutation p.L607W 0.37 deleterious(0) probably_damaging(0.922) TCGA-CF-A47X-01 15 45658387 45658387 C T GATM Missense_Mutation p.E279K 0.22 tolerated(0.05) possibly_damaging(0.461) TCGA-CF-A47X-01 15 51829744 51829744 G C DMXL2 Missense_Mutation p.L520V 0.26 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 15 64792156 64792156 G A ZNF609 Missense_Mutation p.E180K 0.33 tolerated(0.1) benign(0.05) TCGA-CF-A47X-01 15 67546914 67546914 C T AAGAB Missense_Mutation p.G19E 0.33 tolerated(0.52) benign(0.001) TCGA-CF-A47X-01 15 75137377 75137377 C G SCAMP2 3'UTR 0.33 TCGA-CF-A47X-01 15 77906498 77906498 C T LINGO1 Missense_Mutation p.R584Q 0.55 tolerated(0.21) probably_damaging(0.989) TCGA-CF-A47X-01 15 79178490 79178490 G A MORF4L1 Missense_Mutation p.E94K 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-CF-A47X-01 15 79614491 79614491 C T TMED3 Nonsense_Mutation p.Q197* 0.25 TCGA-CF-A47X-01 15 80889553 80889553 C T ARNT2 3'UTR 0.53 TCGA-CF-A47X-01 16 21049249 21049249 G C DNAH3 Missense_Mutation p.S1595C 0.13 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 16 23536474 23536474 C A EARS2 Intron 0.18 TCGA-CF-A47X-01 16 27556794 27556794 G A GTF3C1 Missense_Mutation p.P91L 0.18 deleterious(0.01) possibly_damaging(0.564) TCGA-CF-A47X-01 16 27561194 27561194 C G GTF3C1 Silent p.S6S 0.32 TCGA-CF-A47X-01 16 2818160 2818160 C T SRRM2 Missense_Mutation p.S2544F 0.69 probably_damaging(0.996) TCGA-CF-A47X-01 16 2980818 2980818 G A FLYWCH1 Missense_Mutation p.E244K 0.36 tolerated(0.12) possibly_damaging(0.454) TCGA-CF-A47X-01 16 29937157 29937157 G C KCTD13 Silent p.L66L 0.10 TCGA-CF-A47X-01 16 3820936 3820936 G A CREBBP Nonsense_Mutation p.Q839* 0.61 TCGA-CF-A47X-01 16 49430419 49430419 G A C16orf78 Missense_Mutation p.M160I 0.69 tolerated(0.73) benign(0.002) TCGA-CF-A47X-01 16 56782202 56782202 C T NUP93 Nonsense_Mutation p.Q15* 0.65 TCGA-CF-A47X-01 16 58582418 58582418 C G CNOT1 Intron 0.65 TCGA-CF-A47X-01 16 67645940 67645940 G A CTCF Missense_Mutation p.D290N 0.20 tolerated(0.2) benign(0.241) TCGA-CF-A47X-01 16 74729201 74729201 C G MLKL Missense_Mutation p.R152T 0.20 tolerated(0.58) benign(0.03) TCGA-CF-A47X-01 16 75654168 75654168 C T ADAT1 Silent p.K78K 0.66 TCGA-CF-A47X-01 16 88748104 88748104 G A SNAI3 Missense_Mutation p.S32F 0.82 tolerated(0.56) possibly_damaging(0.485) TCGA-CF-A47X-01 16 89348312 89348312 C T ANKRD11 Silent p.V1546V 0.61 TCGA-CF-A47X-01 16 89348356 89348356 C A ANKRD11 Nonsense_Mutation p.E1532* 0.76 TCGA-CF-A47X-01 17 10295270 10295270 G A MYH8 Missense_Mutation p.L1865F 0.46 tolerated(0.08) benign(0.031) TCGA-CF-A47X-01 17 19641520 19641520 G A ALDH3A1 3'UTR 0.08 TCGA-CF-A47X-01 17 29645898 29645898 G C EVI2A Nonsense_Mutation p.S68* 0.45 TCGA-CF-A47X-01 17 30519222 30519222 G A RHOT1 Missense_Mutation p.M181I 0.38 deleterious(0.05) benign(0.003) TCGA-CF-A47X-01 17 39316951 39316951 G C KRTAP4-4 5'UTR 0.51 TCGA-CF-A47X-01 17 40871131 40871131 C G EZH1 Missense_Mutation p.M253I 0.19 deleterious(0.04) benign(0.006) TCGA-CF-A47X-01 17 43180358 43180358 G C NMT1 Missense_Mutation p.D345H 0.45 deleterious(0.04) probably_damaging(0.964) TCGA-CF-A47X-01 17 43183056 43183056 G A NMT1 3'UTR 0.23 TCGA-CF-A47X-01 17 43227111 43227111 G A HEXIM1 Missense_Mutation p.R185Q 0.46 deleterious(0) probably_damaging(0.996) TCGA-CF-A47X-01 17 43474306 43474306 C G ARHGAP27 Missense_Mutation p.E302Q 0.33 deleterious(0.03) possibly_damaging(0.475) TCGA-CF-A47X-01 17 44144079 44144079 C T KANSL1 Missense_Mutation p.D558N 0.45 tolerated(0.19) benign(0.239) TCGA-CF-A47X-01 17 45368350 45368350 C T ITGB3 Missense_Mutation p.R386C 0.45 tolerated(0.18) probably_damaging(0.962) TCGA-CF-A47X-01 17 51901945 51901945 T C KIF2B Silent p.I517I 0.52 TCGA-CF-A47X-01 17 58156227 58156227 C T HEATR6 Missense_Mutation p.E17K 0.12 tolerated_low_confidence(0.25) benign(0.033) TCGA-CF-A47X-01 17 59885937 59885937 C A BRIP1 Missense_Mutation p.G270V 0.04 deleterious(0.03) possibly_damaging(0.549) TCGA-CF-A47X-01 17 62122781 62122781 C T ERN1 Missense_Mutation p.R864K 0.33 tolerated(0.6) benign(0.003) TCGA-CF-A47X-01 17 62122829 62122829 C G ERN1 Missense_Mutation p.R848T 0.35 tolerated(0.05) possibly_damaging(0.793) TCGA-CF-A47X-01 17 65026656 65026656 G C CACNG4 Missense_Mutation p.D174H 0.41 deleterious(0) probably_damaging(0.972) TCGA-CF-A47X-01 17 67075029 67075029 G A ABCA6 3'UTR 0.33 TCGA-CF-A47X-01 17 72699197 72699197 C T CD300LF Silent p.L141L 0.37 TCGA-CF-A47X-01 17 80576938 80576938 G C WDR45B Missense_Mutation p.Q229E 0.39 tolerated(0.15) benign(0.003) TCGA-CF-A47X-01 18 21492746 21492746 G C LAMA3 Missense_Mutation p.L2410F 0.50 probably_damaging(0.919) TCGA-CF-A47X-01 18 28612237 28612237 G A DSC3 Silent p.F25F 0.17 TCGA-CF-A47X-01 18 33836933 33836933 C G MOCOS Missense_Mutation p.Q723E 0.18 tolerated(1) benign(0.001) TCGA-CF-A47X-01 18 3457714 3457714 G C TGIF1 Missense_Mutation p.D328H 0.52 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-CF-A47X-01 18 47797635 47797635 A C MBD1 Intron 0.36 TCGA-CF-A47X-01 18 52927207 52927207 G A TCF4 Missense_Mutation p.P450S 0.43 deleterious(0.02) probably_damaging(1) TCGA-CF-A47X-01 18 61030029 61030029 G C KDSR Missense_Mutation p.L61V 0.10 tolerated(0.1) possibly_damaging(0.764) TCGA-CF-A47X-01 18 6971981 6971981 C G LAMA1 Splice_Site p.X2259_splice 0.49 TCGA-CF-A47X-01 18 7032165 7032165 G C LAMA1 Missense_Mutation p.S725C 0.40 deleterious(0) possibly_damaging(0.895) TCGA-CF-A47X-01 18 74639936 74639936 G A ZNF236 Missense_Mutation p.G1488S 0.18 tolerated(1) benign(0.001) TCGA-CF-A47X-01 19 10450347 10450347 G A ICAM3 5'UTR 0.29 TCGA-CF-A47X-01 19 12800192 12800192 G A FBXW9 Silent p.L432L 0.24 TCGA-CF-A47X-01 19 15375389 15375389 C G BRD4 Missense_Mutation p.K346N 0.41 benign(0.403) TCGA-CF-A47X-01 19 15508030 15508030 G C AKAP8L Silent p.L489L 0.26 TCGA-CF-A47X-01 19 18273784 18273784 G A PIK3R2 Missense_Mutation p.G373R 0.54 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 19 18684149 18684149 C T UBA52 Silent p.I13I 0.16 TCGA-CF-A47X-01 19 19334840 19334840 C T NCAN Silent p.F162F 0.33 TCGA-CF-A47X-01 19 19371875 19371875 G A HAPLN4 Silent p.H77H 0.41 TCGA-CF-A47X-01 19 19626788 19626788 G C NDUFA13 5'UTR 0.35 TCGA-CF-A47X-01 19 20045450 20045450 G C ZNF93 Missense_Mutation p.E562D 0.19 deleterious(0.04) benign(0.082) TCGA-CF-A47X-01 19 2917760 2917760 G A ZNF57 Missense_Mutation p.E381K 0.16 tolerated(0.89) possibly_damaging(0.535) TCGA-CF-A47X-01 19 36207638 36207638 C T ZBTB32 Missense_Mutation p.S483F 0.43 tolerated_low_confidence(0.08) unknown(0) TCGA-CF-A47X-01 19 42819163 42819163 G C TMEM145 Missense_Mutation p.E147Q 0.26 tolerated(0.17) benign(0.049) TCGA-CF-A47X-01 19 42819584 42819584 G A TMEM145 Missense_Mutation p.G213E 0.37 tolerated(0.12) possibly_damaging(0.548) TCGA-CF-A47X-01 19 42819589 42819589 G A TMEM145 Missense_Mutation p.E215K 0.38 tolerated(0.06) benign(0.16) TCGA-CF-A47X-01 19 42911597 42911597 C G LIPE Silent p.L622L 0.23 TCGA-CF-A47X-01 19 43371121 43371121 G A PSG1 3'Flank 0.30 TCGA-CF-A47X-01 19 44050239 44050239 C T XRCC1 Silent p.A482A 0.07 TCGA-CF-A47X-01 19 46095010 46095010 G C GPR4 Missense_Mutation p.L39V 0.48 deleterious(0) probably_damaging(0.998) TCGA-CF-A47X-01 19 47151949 47151949 G C DACT3 Missense_Mutation p.F560L 0.50 tolerated(0.61) benign(0.294) TCGA-CF-A47X-01 19 47646764 47646764 C T SAE1 Missense_Mutation p.R38W 0.47 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 19 47823535 47823535 G A C5AR1 Silent p.L167L 0.42 TCGA-CF-A47X-01 19 48967909 48967909 C G KCNJ14 Missense_Mutation p.L396V 0.39 deleterious(0.02) probably_damaging(0.932) TCGA-CF-A47X-01 19 50475326 50475326 C T VRK3 3'Flank 0.18 TCGA-CF-A47X-01 19 51297831 51297831 G C ACPT Missense_Mutation p.D327H 0.27 deleterious(0.04) possibly_damaging(0.879) TCGA-CF-A47X-01 19 52869647 52869647 C T ZNF610 Missense_Mutation p.T339M 0.48 deleterious(0) probably_damaging(0.924) TCGA-CF-A47X-01 19 53572201 53572201 G T ZNF160 Missense_Mutation p.A529E 0.21 tolerated(0.09) possibly_damaging(0.703) TCGA-CF-A47X-01 19 53762669 53762669 G T VN1R2 Missense_Mutation p.W347C 0.26 deleterious(0) probably_damaging(0.992) TCGA-CF-A47X-01 19 54967183 54967183 A C LENG8 Missense_Mutation p.K355Q 0.47 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-CF-A47X-01 19 55598801 55598801 G T EPS8L1 Nonsense_Mutation p.E695* 0.22 TCGA-CF-A47X-01 19 56041210 56041210 G A SBK2 Nonsense_Mutation p.R313* 0.41 TCGA-CF-A47X-01 19 57716785 57716785 G C ZNF264 Missense_Mutation p.E61Q 0.52 deleterious(0.03) benign(0.164) TCGA-CF-A47X-01 19 57724388 57724388 G T ZNF264 3'UTR 0.54 TCGA-CF-A47X-01 19 57724452 57724452 G C ZNF264 3'UTR 0.67 TCGA-CF-A47X-01 19 57744876 57744876 G C AURKC Missense_Mutation p.V162L 0.47 deleterious(0) probably_damaging(0.916) TCGA-CF-A47X-01 19 58050023 58050023 C T ZNF549 Missense_Mutation p.H551Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 19 58083424 58083424 G A ZNF416 3'UTR 0.53 TCGA-CF-A47X-01 19 6366307 6366307 C A CLPP Silent p.I198I 0.43 TCGA-CF-A47X-01 19 6718277 6718277 G C C3 Missense_Mutation p.I138M 0.40 deleterious(0) probably_damaging(0.973) TCGA-CF-A47X-01 19 7703942 7703942 C T STXBP2 Missense_Mutation p.S42F 0.57 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 1 104203056 104203056 G A AMY1A Missense_Mutation p.R318Q 0.22 deleterious(0.01) possibly_damaging(0.725) TCGA-CF-A47X-01 1 110882414 110882414 G A RBM15 Silent p.P129P 0.26 TCGA-CF-A47X-01 1 11863056 11863056 C T MTHFR Missense_Mutation p.E40K 0.54 tolerated(0.6) benign(0.23) TCGA-CF-A47X-01 1 12336751 12336751 C T VPS13D Missense_Mutation p.R1036W 0.59 benign(0.312) TCGA-CF-A47X-01 1 146398396 146398396 C G NBPF12 Missense_Mutation p.Q128E 0.52 benign(0.095) TCGA-CF-A47X-01 1 146758107 146758107 C G CHD1L Silent p.L717L 0.20 TCGA-CF-A47X-01 1 150980974 150980974 C A PRUNE 5'UTR 0.09 TCGA-CF-A47X-01 1 152275721 152275721 C G FLG Missense_Mutation p.E3881Q 0.19 unknown(0) TCGA-CF-A47X-01 1 153920691 153920691 C T CRTC2 Missense_Mutation p.R659H 0.26 tolerated(0.15) benign(0.004) TCGA-CF-A47X-01 1 154600395 154600395 C T ADAR Missense_Mutation p.G27E 0.78 probably_damaging(0.934) TCGA-CF-A47X-01 1 156035720 156035720 C T RAB25 Missense_Mutation p.S21L 0.31 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CF-A47X-01 1 160011443 160011443 A T KCNJ10 Missense_Mutation p.C294S 0.69 deleterious(0.01) probably_damaging(1) TCGA-CF-A47X-01 1 161987260 161987260 T C OLFML2B Missense_Mutation p.Y159C 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-CF-A47X-01 1 162346604 162346604 G A C1orf111 5'UTR 0.67 TCGA-CF-A47X-01 1 165649804 165649805 - CCCTCA ALDH9A1 Nonsense_Mutation p.G236_A237ins* 0.40 TCGA-CF-A47X-01 1 16583177 16583177 G A FBXO42 Missense_Mutation p.R194W 0.24 deleterious(0.01) probably_damaging(0.927) TCGA-CF-A47X-01 1 168215842 168215842 A G SFT2D2 3'UTR 0.17 TCGA-CF-A47X-01 1 18149829 18149829 C T ACTL8 Missense_Mutation p.A109V 0.45 tolerated(0.12) benign(0.018) TCGA-CF-A47X-01 1 185966560 185966560 G C HMCN1 Splice_Site p.X1260_splice 0.11 TCGA-CF-A47X-01 1 201980326 201980326 C A ELF3 Nonsense_Mutation p.S21* 0.24 TCGA-CF-A47X-01 1 201981202 201981202 G A ELF3 Missense_Mutation p.R94Q 0.19 tolerated(0.31) benign(0.161) TCGA-CF-A47X-01 1 201981872 201981872 G A ELF3 Missense_Mutation p.D195N 0.26 tolerated(0.1) possibly_damaging(0.628) TCGA-CF-A47X-01 1 201982373 201982373 G C ELF3 Missense_Mutation p.R251P 0.14 tolerated(0.36) probably_damaging(0.999) TCGA-CF-A47X-01 1 201982405 201982405 G C ELF3 Missense_Mutation p.E262Q 0.15 deleterious(0.03) possibly_damaging(0.811) TCGA-CF-A47X-01 1 202572216 202572216 C T SYT2 Missense_Mutation p.E126K 0.16 tolerated(0.1) benign(0) TCGA-CF-A47X-01 1 20470056 20470056 G A PLA2G2F Missense_Mutation p.R96H 0.08 tolerated(0.13) benign(0.048) TCGA-CF-A47X-01 1 207271509 207271509 G T C4BPB Missense_Mutation p.G173V 0.67 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 1 210637859 210637859 G A HHAT Silent p.A290A 0.17 TCGA-CF-A47X-01 1 21306856 21306856 G A EIF4G3 Missense_Mutation p.P106L 0.53 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 1 214568275 214568275 G A PTPN14 Silent p.L271L 0.19 TCGA-CF-A47X-01 1 2160559 2160559 G A SKI Silent p.E118E 0.40 TCGA-CF-A47X-01 1 220318850 220318850 G C IARS2 Splice_Site p.X918_splice 0.25 TCGA-CF-A47X-01 1 228474506 228474506 G T OBSCN Missense_Mutation p.D3533Y 0.65 probably_damaging(1) TCGA-CF-A47X-01 1 244869017 244869017 G A DESI2 Missense_Mutation p.E171K 0.31 tolerated(0.19) benign(0.043) TCGA-CF-A47X-01 1 26795418 26795418 G C DHDDS Missense_Mutation p.K267N 0.15 tolerated(0.46) benign(0.03) TCGA-CF-A47X-01 1 28206336 28206336 C T THEMIS2 Silent p.L139L 0.24 TCGA-CF-A47X-01 1 34166271 34166271 A C CSMD2 Silent p.V1153V 0.24 TCGA-CF-A47X-01 1 35227413 35227413 C T GJB4 Silent p.F186F 0.25 TCGA-CF-A47X-01 1 36551484 36551484 G - TEKT2 Frame_Shift_Del p.D111Mfs*7 0.38 TCGA-CF-A47X-01 1 37271928 37271928 C T GRIK3 Splice_Site p.X698_splice 0.54 TCGA-CF-A47X-01 1 39917902 39917902 G C MACF1 Missense_Mutation p.E4772D 0.55 benign(0.164) TCGA-CF-A47X-01 1 42048659 42048659 C G HIVEP3 Missense_Mutation p.E604Q 0.32 probably_damaging(0.997) TCGA-CF-A47X-01 1 43393447 43393447 G A SLC2A1 Silent p.I369I 0.57 TCGA-CF-A47X-01 1 44085066 44085066 C T PTPRF Missense_Mutation p.S1585L 0.17 deleterious(0) possibly_damaging(0.764) TCGA-CF-A47X-01 1 45965971 45965971 C T MMACHC 5'UTR 0.25 TCGA-CF-A47X-01 1 55551623 55551623 G C USP24 Missense_Mutation p.Q2253E 0.53 tolerated(0.83) benign(0.038) TCGA-CF-A47X-01 1 67313237 67313237 C A WDR78 Missense_Mutation p.M407I 0.09 deleterious(0) possibly_damaging(0.792) TCGA-CF-A47X-01 1 70482147 70482147 G T LRRC7 Splice_Site p.X379_splice 0.21 TCGA-CF-A47X-01 1 76356378 76356378 C G MSH4 Intron 0.21 TCGA-CF-A47X-01 1 86144454 86144454 C T ZNHIT6 Missense_Mutation p.D367N 0.37 tolerated(0.26) benign(0.008) TCGA-CF-A47X-01 1 9661427 9661427 G T TMEM201 Missense_Mutation p.A291S 0.26 tolerated(0.22) possibly_damaging(0.673) TCGA-CF-A47X-01 1 97839179 97839179 C A DPYD Nonsense_Mutation p.E666* 0.29 TCGA-CF-A47X-01 1 99772691 99772691 T C LPPR4 3'UTR 0.29 TCGA-CF-A47X-01 20 17475660 17475660 G C BFSP1 Missense_Mutation p.L353V 0.20 tolerated(1) benign(0.001) TCGA-CF-A47X-01 20 20582440 20582440 G A RALGAPA2 Missense_Mutation p.L697F 0.57 tolerated(0.09) benign(0.361) TCGA-CF-A47X-01 20 2819522 2819522 C G PCED1A Silent p.V137V 0.42 TCGA-CF-A47X-01 20 31889210 31889210 G C BPIFB1 Missense_Mutation p.D307H 0.14 deleterious(0.02) benign(0.201) TCGA-CF-A47X-01 20 31948220 31948220 C T CDK5RAP1 Missense_Mutation p.M540I 0.24 tolerated(0.66) benign(0.001) TCGA-CF-A47X-01 20 3553402 3553402 C T ATRN Silent p.F632F 0.51 TCGA-CF-A47X-01 20 37394955 37394955 C T ACTR5 Silent p.F456F 0.25 TCGA-CF-A47X-01 20 40113104 40113104 G A CHD6 Silent p.L715L 0.40 TCGA-CF-A47X-01 20 43600730 43600730 A G STK4 Missense_Mutation p.K16R 0.04 tolerated(0.12) benign(0.046) TCGA-CF-A47X-01 20 50346391 50346391 G A ATP9A Silent p.F65F 0.16 TCGA-CF-A47X-01 20 50346463 50346463 G T ATP9A Silent p.V41V 0.21 TCGA-CF-A47X-01 21 42812951 42812951 C A MX1 Silent p.I243I 0.50 TCGA-CF-A47X-01 21 43735421 43735421 C T TFF3 Missense_Mutation p.E36K 0.29 tolerated(0.12) benign(0.018) TCGA-CF-A47X-01 21 46285354 46285354 G A PTTG1IP Nonsense_Mutation p.Q42* 0.75 TCGA-CF-A47X-01 21 47558818 47558818 T C FTCD Missense_Mutation p.K427R 0.93 tolerated(0.08) benign(0.006) TCGA-CF-A47X-01 22 22989677 22989677 G A GGTLC2 Missense_Mutation p.D143N 0.43 tolerated(0.21) benign(0.232) TCGA-CF-A47X-01 22 37196942 37196942 C T PVALB Missense_Mutation p.E109K 0.72 tolerated(0.15) benign(0.109) TCGA-CF-A47X-01 22 39497389 39497389 G A APOBEC3H Missense_Mutation p.D100N 0.38 tolerated(0.22) benign(0.011) TCGA-CF-A47X-01 22 40819591 40819591 G A MKL1 Silent p.L192L 0.36 TCGA-CF-A47X-01 22 42976311 42976311 C G POLDIP3 3'Flank 0.19 TCGA-CF-A47X-01 22 44602386 44602386 C T PARVG 3'UTR 0.40 TCGA-CF-A47X-01 2 108624955 108624955 C G SLC5A7 Silent p.P310P 0.13 TCGA-CF-A47X-01 2 110301744 110301744 T C SEPT10 3'UTR 0.62 TCGA-CF-A47X-01 2 110889272 110889272 C G NPHP1 Missense_Mutation p.M598I 0.36 tolerated(1) benign(0.015) TCGA-CF-A47X-01 2 121107089 121107089 G A INHBB Missense_Mutation p.R288H 0.71 tolerated(0.05) probably_damaging(0.999) TCGA-CF-A47X-01 2 145158826 145158826 C G ZEB2 Missense_Mutation p.E286Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-CF-A47X-01 2 152432241 152432241 G C NEB Missense_Mutation p.L5661V 0.25 probably_damaging(0.99) TCGA-CF-A47X-01 2 166172019 166172019 C T SCN2A Silent p.F474F 0.31 TCGA-CF-A47X-01 2 174228564 174228564 G C CDCA7 Missense_Mutation p.E214Q 0.58 deleterious(0) probably_damaging(0.979) TCGA-CF-A47X-01 2 175436967 175436967 C G WIPF1 Missense_Mutation p.S189T 0.28 deleterious(0.01) benign(0.024) TCGA-CF-A47X-01 2 176996344 176996344 C T HOXD8 3'UTR 0.48 TCGA-CF-A47X-01 2 179399686 179399686 C G TTN Missense_Mutation p.E33886Q 0.71 TCGA-CF-A47X-01 2 179576811 179576811 G A TTN Missense_Mutation p.T9249M 0.14 TCGA-CF-A47X-01 2 188247951 188247951 G C CALCRL Missense_Mutation p.Q45E 0.67 tolerated(0.06) possibly_damaging(0.907) TCGA-CF-A47X-01 2 201324545 201324545 A C SPATS2L Missense_Mutation p.E281A 0.63 deleterious(0.04) probably_damaging(0.999) TCGA-CF-A47X-01 2 206480199 206480199 G - PARD3B Frame_Shift_Del p.V1032* 0.32 TCGA-CF-A47X-01 2 209010571 209010571 C T CRYGB Missense_Mutation p.R60H 0.06 deleterious(0.01) benign(0.289) TCGA-CF-A47X-01 2 219506999 219506999 C T ZNF142 Missense_Mutation p.D1414N 0.36 tolerated_low_confidence(0.19) benign(0) TCGA-CF-A47X-01 2 219883875 219883875 G C CCDC108 Missense_Mutation p.T1167S 0.35 deleterious(0) probably_damaging(0.973) TCGA-CF-A47X-01 2 238285439 238285439 C G COL6A3 Missense_Mutation p.V1016L 0.21 benign(0.041) TCGA-CF-A47X-01 2 239169492 239169492 C T PER2 Missense_Mutation p.E507K 0.26 tolerated(0.05) benign(0.079) TCGA-CF-A47X-01 2 239185789 239185789 T C PER2 Silent p.P92P 0.52 TCGA-CF-A47X-01 2 242035497 242035497 A C MTERFD2 Missense_Mutation p.D354E 0.12 tolerated(1) unknown(0) TCGA-CF-A47X-01 2 24914444 24914444 C A NCOA1 Silent p.T209T 0.18 TCGA-CF-A47X-01 2 26705415 26705415 C T OTOF Missense_Mutation p.E480K 0.34 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 2 27305827 27305827 G A EMILIN1 Missense_Mutation p.R463Q 0.18 benign(0.421) TCGA-CF-A47X-01 2 29063171 29063171 C T SPDYA Missense_Mutation p.S229L 0.36 tolerated(0.79) benign(0.002) TCGA-CF-A47X-01 2 37229562 37229562 G A HEATR5B Missense_Mutation p.S1735L 0.31 tolerated(0.21) benign(0.001) TCGA-CF-A47X-01 2 39222399 39222399 T - SOS1 Frame_Shift_Del p.S1071Vfs*17 0.14 TCGA-CF-A47X-01 2 54125027 54125027 C G PSME4 Missense_Mutation p.D1196H 0.31 deleterious(0) probably_damaging(0.98) TCGA-CF-A47X-01 2 55746985 55746985 C G CCDC104 Missense_Mutation p.I16M 0.12 deleterious(0) probably_damaging(0.997) TCGA-CF-A47X-01 2 55874511 55874511 C T PNPT1 Missense_Mutation p.E525K 0.20 tolerated(0.41) benign(0.008) TCGA-CF-A47X-01 2 68607989 68607989 G T PLEK Missense_Mutation p.R111S 0.15 tolerated(0.72) probably_damaging(0.998) TCGA-CF-A47X-01 2 73675451 73675451 G A ALMS1 Silent p.L598L 0.13 TCGA-CF-A47X-01 2 73868797 73868797 G C NAT8 5'UTR 0.31 TCGA-CF-A47X-01 2 74755396 74755396 G C AUP1 Missense_Mutation p.P217R 0.15 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 2 80801301 80801301 C T CTNNA2 Silent p.F585F 0.22 TCGA-CF-A47X-01 3 100354610 100354610 C T GPR128 Silent p.I179I 0.44 TCGA-CF-A47X-01 3 10131998 10131998 C T FANCD2 Missense_Mutation p.R1236C 0.29 deleterious(0) probably_damaging(0.954) TCGA-CF-A47X-01 3 101477264 101477264 G A CEP97 Missense_Mutation p.R605K 0.07 tolerated(0.2) benign(0.002) TCGA-CF-A47X-01 3 108127249 108127249 C G MYH15 Missense_Mutation p.E1520Q 0.41 tolerated(0.05) benign(0.038) TCGA-CF-A47X-01 3 119211328 119211328 C T POGLUT1 3'UTR 0.39 TCGA-CF-A47X-01 3 122432349 122432349 C T PARP14 Missense_Mutation p.S1233F 0.27 tolerated(0.09) benign(0.019) TCGA-CF-A47X-01 3 123339084 123339084 G A MYLK Missense_Mutation p.P1780S 0.56 deleterious(0.05) probably_damaging(0.999) TCGA-CF-A47X-01 3 124376605 124376605 G A KALRN Silent p.K88K 0.41 TCGA-CF-A47X-01 3 128998681 128998681 G C HMCES Missense_Mutation p.D36H 0.46 deleterious(0.04) benign(0.089) TCGA-CF-A47X-01 3 133526617 133526617 C G SRPRB Missense_Mutation p.Q93E 0.32 tolerated(0.15) probably_damaging(0.941) TCGA-CF-A47X-01 3 146311797 146311797 C G PLSCR5 Silent p.L121L 0.51 TCGA-CF-A47X-01 3 154801990 154801990 G C MME Missense_Mutation p.D12H 0.21 deleterious(0) possibly_damaging(0.606) TCGA-CF-A47X-01 3 158980380 158980380 C T IQCJ-SCHIP1 Silent p.L67L 0.44 TCGA-CF-A47X-01 3 167218047 167218047 C A WDR49 Silent p.L623L 0.25 TCGA-CF-A47X-01 3 179754503 179754503 C G PEX5L 5'UTR 0.10 TCGA-CF-A47X-01 3 183884242 183884242 G T DVL3 Missense_Mutation p.E304D 0.20 tolerated(1) benign(0.005) TCGA-CF-A47X-01 3 184009934 184009934 G A ECE2 Missense_Mutation p.G854S 0.06 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 3 47958328 47958328 G A MAP4 Missense_Mutation p.S330L 0.39 tolerated(1) benign(0.001) TCGA-CF-A47X-01 3 49159500 49159500 C T LAMB2 Silent p.E1600E 0.46 TCGA-CF-A47X-01 3 49159609 49159609 C T LAMB2 Missense_Mutation p.A1590T 0.43 deleterious(0) probably_damaging(0.999) TCGA-CF-A47X-01 3 49160419 49160419 C G LAMB2 Missense_Mutation p.E1431Q 0.40 deleterious(0.05) possibly_damaging(0.752) TCGA-CF-A47X-01 3 49365238 49365238 G A USP4 Nonsense_Mutation p.Q81* 0.89 TCGA-CF-A47X-01 3 49395259 49395259 C T GPX1 Intron 0.92 TCGA-CF-A47X-01 3 49949136 49949136 C T MON1A Missense_Mutation p.D243N 0.81 tolerated(0.35) benign(0.048) TCGA-CF-A47X-01 3 56789068 56789068 C A ARHGEF3 Nonsense_Mutation p.E138* 0.47 TCGA-CF-A47X-01 3 97596156 97596156 G A CRYBG3 Missense_Mutation p.E92K 0.43 deleterious_low_confidence(0.02) benign(0.149) TCGA-CF-A47X-01 3 97686026 97686026 G A MINA Missense_Mutation p.H138Y 0.41 deleterious(0) probably_damaging(0.996) TCGA-CF-A47X-01 3 99885224 99885224 C G CMSS1 Nonsense_Mutation p.S134* 0.29 TCGA-CF-A47X-01 4 107037492 107037492 G A TBCK Missense_Mutation p.S760L 0.18 deleterious(0.02) benign(0.018) TCGA-CF-A47X-01 4 110384059 110384059 C - SEC24B Frame_Shift_Del p.P46Qfs*33 0.28 TCGA-CF-A47X-01 4 123855883 123855883 C G SPATA5 Missense_Mutation p.F379L 0.35 tolerated(0.06) possibly_damaging(0.876) TCGA-CF-A47X-01 4 13601105 13601105 A G BOD1L1 Silent p.D2473D 0.52 TCGA-CF-A47X-01 4 154215532 154215532 C T TRIM2 Silent p.I227I 0.27 TCGA-CF-A47X-01 4 155665532 155665532 C G LRAT Silent p.L18L 0.64 TCGA-CF-A47X-01 4 167020485 167020485 C A TLL1 Missense_Mutation p.Q905K 0.45 tolerated(0.32) benign(0.119) TCGA-CF-A47X-01 4 1725548 1725548 G A TACC3 Missense_Mutation p.D86N 0.40 tolerated(0.05) benign(0.317) TCGA-CF-A47X-01 4 178274877 178274877 T C NEIL3 Silent p.S485S 0.56 TCGA-CF-A47X-01 4 2273142 2273142 C G ZFYVE28 Splice_Site p.X810_splice 0.59 TCGA-CF-A47X-01 4 2661671 2661671 G A FAM193A Silent p.R254R 0.50 TCGA-CF-A47X-01 4 48384768 48384768 C T SLAIN2 Missense_Mutation p.S349L 0.52 tolerated(1) probably_damaging(0.99) TCGA-CF-A47X-01 4 57217571 57217571 C A AASDH Missense_Mutation p.L543F 0.44 tolerated(0.62) possibly_damaging(0.463) TCGA-CF-A47X-01 4 71847761 71847761 C G MOB1B Nonsense_Mutation p.S218* 0.17 TCGA-CF-A47X-01 4 8383276 8383276 T C ACOX3 Silent p.K532K 0.24 TCGA-CF-A47X-01 5 134210137 134210137 G A TXNDC15 Missense_Mutation p.R7Q 0.41 tolerated_low_confidence(0.09) benign(0.005) TCGA-CF-A47X-01 5 13753620 13753620 C T DNAH5 Missense_Mutation p.G3532S 0.47 probably_damaging(0.959) TCGA-CF-A47X-01 5 140216159 140216159 G A PCDHA7 Missense_Mutation p.A731T 0.49 tolerated_low_confidence(0.13) benign(0.019) TCGA-CF-A47X-01 5 14609093 14609093 G C FAM105A Silent p.L288L 0.42 TCGA-CF-A47X-01 5 149216377 149216377 G A PPARGC1B Missense_Mutation p.E787K 0.43 deleterious(0) probably_damaging(0.972) TCGA-CF-A47X-01 5 33937739 33937739 C T RXFP3 Silent p.R298R 0.36 TCGA-CF-A47X-01 5 60060150 60060151 - A ELOVL7 Frame_Shift_Ins p.V135Cfs*7 0.17 TCGA-CF-A47X-01 5 66492382 66492382 C G CD180 Missense_Mutation p.E30Q 0.29 tolerated(0.19) benign(0.003) TCGA-CF-A47X-01 5 78326677 78326677 G C DMGDH Silent p.L554L 0.37 TCGA-CF-A47X-01 5 96508940 96508940 G A RIOK2 Missense_Mutation p.P176S 0.40 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 6 106552896 106552896 G A PRDM1 Silent p.G287G 0.18 TCGA-CF-A47X-01 6 107531746 107531746 T A PDSS2 Missense_Mutation p.K302I 0.07 tolerated(0.09) possibly_damaging(0.703) TCGA-CF-A47X-01 6 137814906 137814906 G A OLIG3 Silent p.I134I 0.63 TCGA-CF-A47X-01 6 139206877 139206877 C T ECT2L Silent p.V723V 0.35 TCGA-CF-A47X-01 6 144801110 144801110 G A UTRN Missense_Mutation p.E1167K 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-CF-A47X-01 6 147525639 147525639 C A STXBP5 5'Flank 0.30 TCGA-CF-A47X-01 6 147525680 147525680 C T STXBP5 Silent p.F4F 0.31 TCGA-CF-A47X-01 6 150004897 150004897 G C LATS1 Nonsense_Mutation p.S443* 0.48 TCGA-CF-A47X-01 6 150005093 150005093 G A LATS1 Silent p.L378L 0.67 TCGA-CF-A47X-01 6 155532414 155532414 C A TIAM2 Missense_Mutation p.H1047Q 0.24 tolerated(0.12) benign(0.006) TCGA-CF-A47X-01 6 159084286 159084286 G T SYTL3 5'UTR 0.41 TCGA-CF-A47X-01 6 160829861 160829861 A T SLC22A3 Silent p.I255I 0.48 TCGA-CF-A47X-01 6 16290712 16290712 C G GMPR Silent p.V239V 0.13 TCGA-CF-A47X-01 6 24843538 24843538 C T FAM65B Missense_Mutation p.G491E 0.75 tolerated(0.25) benign(0.088) TCGA-CF-A47X-01 6 28497368 28497368 A G GPX5 Silent p.T76T 0.25 TCGA-CF-A47X-01 6 31112958 31112958 G A CCHCR1 Missense_Mutation p.R621W 0.08 deleterious(0) probably_damaging(0.997) TCGA-CF-A47X-01 6 32013879 32013879 C G TNXB 5'UTR 0.50 TCGA-CF-A47X-01 6 33156801 33156801 G A COL11A2 Missense_Mutation p.P133S 0.63 possibly_damaging(0.647) TCGA-CF-A47X-01 6 37414193 37414193 G A CMTR1 Missense_Mutation p.E138K 0.49 tolerated(0.23) benign(0.008) TCGA-CF-A47X-01 6 42237184 42237184 G A TRERF1 Nonsense_Mutation p.Q49* 0.24 TCGA-CF-A47X-01 6 56482862 56482862 C T DST Intron 0.33 TCGA-CF-A47X-01 6 78173057 78173057 G C HTR1B Missense_Mutation p.Q22E 0.63 tolerated_low_confidence(0.57) benign(0) TCGA-CF-A47X-01 7 100192003 100192003 C T FBXO24 Intron 0.28 TCGA-CF-A47X-01 7 100486857 100486857 C T UFSP1 Silent p.R12R 0.73 TCGA-CF-A47X-01 7 102881037 102881037 G T DPY19L2P2 RNA 0.32 TCGA-CF-A47X-01 7 103276721 103276721 C T RELN Missense_Mutation p.R755H 0.40 deleterious(0) probably_damaging(0.996) TCGA-CF-A47X-01 7 107323677 107323677 G C SLC26A4 Missense_Mutation p.D266H 0.32 deleterious(0.04) benign(0.005) TCGA-CF-A47X-01 7 129950685 129950685 G A CPA4 Silent p.S284S 0.35 TCGA-CF-A47X-01 7 130021505 130021505 C T CPA1 Missense_Mutation p.S61F 0.24 tolerated(0.71) benign(0.008) TCGA-CF-A47X-01 7 133812126 133812126 G A LRGUK Silent p.A2A 0.29 TCGA-CF-A47X-01 7 133812133 133812133 G C LRGUK Missense_Mutation p.E5Q 0.28 tolerated_low_confidence(0.36) unknown(0) TCGA-CF-A47X-01 7 134893697 134893697 G C WDR91 Silent p.L119L 0.26 TCGA-CF-A47X-01 7 135269722 135269722 C T NUP205 Silent p.L395L 0.38 TCGA-CF-A47X-01 7 140301254 140301254 G A DENND2A Missense_Mutation p.S315F 0.73 deleterious(0.03) possibly_damaging(0.498) TCGA-CF-A47X-01 7 142649642 142649642 C T KEL Missense_Mutation p.R386K 0.27 tolerated(0.22) benign(0.05) TCGA-CF-A47X-01 7 148511215 148511215 G C EZH2 Missense_Mutation p.P563A 0.23 deleterious(0) benign(0.341) TCGA-CF-A47X-01 7 150761666 150761666 C T SLC4A2 Missense_Mutation p.P91S 0.40 tolerated_low_confidence(0.54) probably_damaging(0.968) TCGA-CF-A47X-01 7 21658811 21658811 A T DNAH11 Nonsense_Mutation p.K1455* 0.29 TCGA-CF-A47X-01 7 26237295 26237295 C T HNRNPA2B1 Missense_Mutation p.E34K 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-CF-A47X-01 7 30084698 30084698 C G PLEKHA8 Intron 0.31 TCGA-CF-A47X-01 7 35673357 35673357 G A HERPUD2 Silent p.F388F 0.65 TCGA-CF-A47X-01 7 5781384 5781384 C G RNF216 Silent p.L88L 0.33 TCGA-CF-A47X-01 7 81386604 81386604 C A HGF Missense_Mutation p.C128F 0.32 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 7 8790658 8790658 G A NXPH1 Silent p.T25T 0.27 TCGA-CF-A47X-01 7 93520029 93520029 G T TFPI2 5'UTR 0.29 TCGA-CF-A47X-01 8 113529362 113529362 G A CSMD3 Nonsense_Mutation p.Q1553* 0.19 TCGA-CF-A47X-01 8 118147554 118147554 C T SLC30A8 5'Flank 0.74 TCGA-CF-A47X-01 8 120942060 120942060 G C DEPTOR Missense_Mutation p.D103H 0.66 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 8 13356815 13356815 C T DLC1 Missense_Mutation p.E256K 0.22 tolerated_low_confidence(0.13) benign(0.002) TCGA-CF-A47X-01 8 135602534 135602534 G A ZFAT Missense_Mutation p.S847L 0.71 tolerated(0.06) benign(0.003) TCGA-CF-A47X-01 8 142178485 142178485 G A DENND3 Silent p.S632S 0.77 TCGA-CF-A47X-01 8 30657175 30657175 C T PPP2CB Missense_Mutation p.E67K 0.20 deleterious(0.04) probably_damaging(0.991) TCGA-CF-A47X-01 8 32463200 32463200 C A NRG1 Missense_Mutation p.N133K 0.30 tolerated(0.08) benign(0.405) TCGA-CF-A47X-01 8 38123798 38123798 G A PPAPDC1B Silent p.F165F 0.24 TCGA-CF-A47X-01 8 41513202 41513202 C T ANK1 3'UTR 0.26 TCGA-CF-A47X-01 8 53574156 53574156 T C RB1CC1 Missense_Mutation p.I433V 0.80 deleterious(0.01) probably_damaging(0.977) TCGA-CF-A47X-01 8 59739443 59739443 C T TOX Missense_Mutation p.E315K 0.21 deleterious(0.02) probably_damaging(0.988) TCGA-CF-A47X-01 8 77690530 77690530 G C ZFHX4 Missense_Mutation p.L1060F 0.21 possibly_damaging(0.765) TCGA-CF-A47X-01 8 9413446 9413446 G A TNKS 5'UTR 0.31 TCGA-CF-A47X-01 9 113241935 113241935 C G SVEP1 Missense_Mutation p.E823Q 0.29 benign(0.02) TCGA-CF-A47X-01 9 125748549 125748549 C T RABGAP1 Silent p.F147F 0.64 TCGA-CF-A47X-01 9 127693679 127693679 C G GOLGA1 Missense_Mutation p.D48H 0.30 deleterious(0.02) benign(0.305) TCGA-CF-A47X-01 9 12821739 12821739 G A LURAP1L Missense_Mutation p.E223K 0.58 deleterious(0) benign(0.22) TCGA-CF-A47X-01 9 131678540 131678540 G A LRRC8A Missense_Mutation p.E775K 0.47 tolerated(0.68) benign(0.022) TCGA-CF-A47X-01 9 133759600 133759600 C T ABL1 Silent p.I660I 0.49 TCGA-CF-A47X-01 9 136653479 136653479 C G VAV2 Missense_Mutation p.K468N 0.24 deleterious(0) possibly_damaging(0.744) TCGA-CF-A47X-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.32 deleterious(0) probably_damaging(1) TCGA-CF-A47X-01 9 139250961 139250961 G A GPSM1 Missense_Mutation p.E594K 0.87 tolerated(0.06) probably_damaging(0.999) TCGA-CF-A47X-01 9 139889971 139889971 G A CLIC3 Silent p.I64I 0.24 TCGA-CF-A47X-01 9 139975232 139975232 C T UAP1L1 Missense_Mutation p.R424C 0.42 deleterious(0.02) probably_damaging(1) TCGA-CF-A47X-01 9 140139114 140139114 C G FAM166A Missense_Mutation p.D243H 0.31 deleterious(0.01) probably_damaging(0.963) TCGA-CF-A47X-01 9 18574100 18574100 C A ADAMTSL1 Missense_Mutation p.Q104K 0.23 tolerated(0.1) benign(0.113) TCGA-CF-A47X-01 9 2115969 2115969 G A SMARCA2 Missense_Mutation p.G1202S 0.27 possibly_damaging(0.855) TCGA-CF-A47X-01 9 21441177 21441177 G A IFNA1 3'UTR 0.52 TCGA-CF-A47X-01 9 35753714 35753714 C T MSMP Missense_Mutation p.R61H 0.18 tolerated(0.14) possibly_damaging(0.807) TCGA-CF-A47X-01 9 37948717 37948717 C T SHB Missense_Mutation p.E421K 0.38 deleterious(0) probably_damaging(0.946) TCGA-CF-A47X-01 9 88916443 88916443 C G ZCCHC6 Missense_Mutation p.E1390Q 0.46 tolerated(0.05) possibly_damaging(0.756) TCGA-CF-A47X-01 9 93629438 93629438 C G SYK Nonsense_Mutation p.S291* 0.30 TCGA-CF-A47X-01 9 990589 990589 C G DMRT3 Missense_Mutation p.R335G 0.27 deleterious_low_confidence(0.02) benign(0) TCGA-CF-A47X-01 9 99522488 99522488 C G ZNF510 Missense_Mutation p.E208D 0.44 tolerated(0.33) benign(0.017) TCGA-CF-A47X-01 X 100911506 100911506 C T ARMCX2 Missense_Mutation p.E357K 0.42 deleterious(0.04) benign(0.033) TCGA-CF-A47X-01 X 155234103 155234103 C G IL9R Missense_Mutation p.S151C 0.13 tolerated(0.06) benign(0.245) TCGA-CF-A47X-01 X 30671577 30671577 C T GK 5'UTR 0.45 TCGA-CF-A47X-01 X 30671630 30671630 C G GK 5'UTR 0.50 TCGA-CF-A47X-01 X 50163448 50163448 C G DGKK RNA 0.29 TCGA-CF-A47X-01 X 65253341 65253341 C G VSIG4 Missense_Mutation p.K129N 0.95 tolerated(0.06) benign(0.355) TCGA-CF-A47X-01 X 67268295 67268295 G A OPHN1 Nonsense_Mutation p.Q794* 0.89 TCGA-CF-A47Y-01 10 123629521 123629521 C T ATE1 Silent p.E325E 0.44 TCGA-CF-A47Y-01 10 131761947 131761947 G T EBF3 Nonsense_Mutation p.S29* 0.32 TCGA-CF-A47Y-01 10 6061422 6061422 C T IL2RA Silent p.T232T 0.31 TCGA-CF-A47Y-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.30 TCGA-CF-A47Y-01 11 1099443 1099443 C T MUC2 Silent p.V2428V 0.56 TCGA-CF-A47Y-01 11 125874007 125874007 G T CDON Intron 0.30 TCGA-CF-A47Y-01 11 58980000 58980000 G C MPEG1 Nonsense_Mutation p.Y113* 0.40 TCGA-CF-A47Y-01 11 69954464 69954464 T C ANO1 Silent p.Y251Y 0.07 TCGA-CF-A47Y-01 11 70052399 70052399 G C FADD Missense_Mutation p.K149N 0.07 deleterious(0.01) probably_damaging(0.945) TCGA-CF-A47Y-01 12 9256874 9256874 G C A2M Missense_Mutation p.I409M 0.54 deleterious(0.04) possibly_damaging(0.689) TCGA-CF-A47Y-01 13 32749720 32749720 T C FRY Missense_Mutation p.L791P 0.52 tolerated(0.05) possibly_damaging(0.862) TCGA-CF-A47Y-01 13 96264368 96264369 - C DZIP1 Frame_Shift_Ins p.F413Vfs*3 0.30 TCGA-CF-A47Y-01 14 22938109 22938109 G C TRDV3 Missense_Mutation p.L89V 0.45 tolerated(0.3) benign(0.003) TCGA-CF-A47Y-01 14 78045300 78045300 G A SPTLC2 Silent p.F160F 0.39 TCGA-CF-A47Y-01 14 91792393 91792393 C T CCDC88C Missense_Mutation p.R353K 0.58 tolerated(0.63) probably_damaging(0.999) TCGA-CF-A47Y-01 15 28447299 28447299 T A HERC2 Missense_Mutation p.E2526V 0.24 benign(0.163) TCGA-CF-A47Y-01 16 50707941 50707941 G A SNX20 Silent p.N109N 0.42 TCGA-CF-A47Y-01 16 70572316 70572316 G C SF3B3 Missense_Mutation p.E306Q 0.40 deleterious(0) probably_damaging(0.993) TCGA-CF-A47Y-01 17 18814555 18814555 G C PRPSAP2 Missense_Mutation p.E242Q 0.28 deleterious(0.04) benign(0.089) TCGA-CF-A47Y-01 17 19319043 19319043 C G RNF112 Missense_Mutation p.S484C 0.20 deleterious(0) probably_damaging(0.979) TCGA-CF-A47Y-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.35 deleterious(0) probably_damaging(1) TCGA-CF-A47Y-01 18 48190739 48190739 C G MAPK4 Silent p.L137L 0.44 TCGA-CF-A47Y-01 18 72999588 72999588 C T TSHZ1 Silent p.F697F 0.42 TCGA-CF-A47Y-01 19 16664356 16664356 C A SLC35E1 3'UTR 0.39 TCGA-CF-A47Y-01 19 18305642 18305642 G T MPV17L2 Missense_Mutation p.E138D 0.24 tolerated(0.78) benign(0.006) TCGA-CF-A47Y-01 19 36290932 36290932 C G PRODH2 3'UTR 0.56 TCGA-CF-A47Y-01 19 38102907 38102907 C T ZNF540 Silent p.P242P 0.37 TCGA-CF-A47Y-01 19 43579718 43579718 A T PSG2 Missense_Mutation p.I166N 0.40 tolerated(0.2) benign(0.004) TCGA-CF-A47Y-01 19 50119181 50119181 C T PRR12 Silent p.L1734L 0.44 TCGA-CF-A47Y-01 19 53886053 53886053 C T ZNF525 3'UTR 0.50 TCGA-CF-A47Y-01 19 55898022 55898022 G A RPL28 Missense_Mutation p.D56N 0.08 tolerated(0.17) benign(0.304) TCGA-CF-A47Y-01 19 58320107 58320107 C A ZNF552 Silent p.G175G 0.38 TCGA-CF-A47Y-01 19 58320368 58320368 C T ZNF552 Silent p.K88K 0.31 TCGA-CF-A47Y-01 1 10355185 10355185 T A KIF1B Silent p.S498S 0.51 TCGA-CF-A47Y-01 1 145273251 145273251 G T NOTCH2NL Missense_Mutation p.Q35H 0.14 tolerated(0.05) probably_damaging(0.998) TCGA-CF-A47Y-01 1 15736684 15736684 C T EFHD2 Nonsense_Mutation p.Q73* 0.37 TCGA-CF-A47Y-01 1 169484757 169484757 C G F5 Missense_Mutation p.K2151N 0.40 deleterious(0.01) possibly_damaging(0.826) TCGA-CF-A47Y-01 1 208272270 208272270 C T PLXNA2 Missense_Mutation p.R551Q 0.35 tolerated(0.12) probably_damaging(0.999) TCGA-CF-A47Y-01 1 214537996 214537996 C T PTPN14 Silent p.S1098S 0.06 TCGA-CF-A47Y-01 1 981368 981368 C T AGRN Missense_Mutation p.A902V 0.06 tolerated(0.25) possibly_damaging(0.499) TCGA-CF-A47Y-01 20 10625856 10625856 T C JAG1 Missense_Mutation p.Y721C 0.47 deleterious(0.01) possibly_damaging(0.706) TCGA-CF-A47Y-01 20 3240188 3240188 G T C20orf194 Missense_Mutation p.S998Y 0.32 tolerated(0.1) possibly_damaging(0.597) TCGA-CF-A47Y-01 20 8722197 8722197 G A PLCB1 Missense_Mutation p.D834N 0.35 tolerated(0.11) benign(0.013) TCGA-CF-A47Y-01 21 38538894 38538894 C T TTC3 Missense_Mutation p.H1460Y 0.42 tolerated(0.47) benign(0.001) TCGA-CF-A47Y-01 22 30818363 30818363 G T SEC14L2 Missense_Mutation p.K393N 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.668) TCGA-CF-A47Y-01 22 39883761 39883761 C T MGAT3 Missense_Mutation p.P137S 0.50 tolerated_low_confidence(0.69) benign(0.002) TCGA-CF-A47Y-01 2 109405321 109405321 C G CCDC138 Missense_Mutation p.I55M 0.47 tolerated_low_confidence(0.09) benign(0.033) TCGA-CF-A47Y-01 2 132288250 132288250 C T CCDC74A Missense_Mutation p.P132S 0.27 tolerated(0.15) benign(0.222) TCGA-CF-A47Y-01 2 168115601 168115601 A - XIRP2 3'UTR 0.21 TCGA-CF-A47Y-01 2 175939296 175939296 C T ATF2 3'UTR 0.56 TCGA-CF-A47Y-01 2 28761224 28761224 G C PLB1 Silent p.G198G 0.17 TCGA-CF-A47Y-01 2 8916924 8916924 G C KIDINS220 Missense_Mutation p.I934M 0.48 tolerated(0.13) probably_damaging(1) TCGA-CF-A47Y-01 3 154832796 154832796 C G MME Missense_Mutation p.I70M 0.38 deleterious(0.04) benign(0.037) TCGA-CF-A47Y-01 3 186790663 186790663 C G ST6GAL1 Silent p.L244L 0.10 TCGA-CF-A47Y-01 3 52255201 52255201 G C TLR9 3'UTR 0.41 TCGA-CF-A47Y-01 3 52255371 52255371 G C TLR9 Silent p.L1141L 0.43 TCGA-CF-A47Y-01 3 52256307 52256307 G T TLR9 Missense_Mutation p.F829L 0.46 tolerated(1) benign(0.002) TCGA-CF-A47Y-01 4 162463806 162463806 C G FSTL5 Missense_Mutation p.R352T 0.41 deleterious(0.01) probably_damaging(0.952) TCGA-CF-A47Y-01 4 1803564 1803564 C T FGFR3 Missense_Mutation p.R248C 0.65 deleterious(0) probably_damaging(0.977) TCGA-CF-A47Y-01 4 6588793 6588793 C T MAN2B2 Silent p.G154G 0.07 TCGA-CF-A47Y-01 4 86482 86482 C G Z95704.2 RNA 0.82 TCGA-CF-A47Y-01 4 96761879 96761879 G A PDHA2 Missense_Mutation p.G193E 0.39 deleterious(0) probably_damaging(0.979) TCGA-CF-A47Y-01 5 10403647 10403647 G C MARCH6 Silent p.L442L 0.08 TCGA-CF-A47Y-01 5 140530312 140530312 T C PCDHB6 Silent p.D158D 0.38 TCGA-CF-A47Y-01 5 140741378 140741378 C T PCDHGB2 Missense_Mutation p.A559V 0.24 tolerated(0.09) possibly_damaging(0.848) TCGA-CF-A47Y-01 5 150056365 150056365 C G MYOZ3 Silent p.L228L 0.09 TCGA-CF-A47Y-01 5 172585777 172585777 C G BNIP1 Silent p.L143L 0.38 TCGA-CF-A47Y-01 5 172585837 172585837 C G BNIP1 Silent p.L163L 0.36 TCGA-CF-A47Y-01 5 70818258 70818258 G C BDP1 Missense_Mutation p.G1712R 0.37 tolerated(0.94) benign(0.003) TCGA-CF-A47Y-01 6 12934082 12934082 G C PHACTR1 Missense_Mutation p.R156S 0.44 unknown(0) TCGA-CF-A47Y-01 6 13365031 13365031 G A GFOD1 Missense_Mutation p.P373S 0.36 deleterious(0.03) benign(0.15) TCGA-CF-A47Y-01 6 27783103 27783103 G T HIST1H2BM Missense_Mutation p.E94D 0.44 deleterious_low_confidence(0.02) benign(0.402) TCGA-CF-A47Y-01 6 29394604 29394604 G A OR11A1 Missense_Mutation p.S272F 0.34 deleterious(0.01) benign(0.396) TCGA-CF-A47Y-01 6 32122463 32122463 C T PPT2 Missense_Mutation p.P37L 0.05 tolerated(0.3) possibly_damaging(0.851) TCGA-CF-A47Y-01 6 32944516 32944516 C T BRD2 Nonsense_Mutation p.Q335* 0.10 TCGA-CF-A47Y-01 6 88854860 88854860 G - CNR1 Frame_Shift_Del p.P45Hfs*6 0.35 TCGA-CF-A47Y-01 7 151860461 151860461 T A KMT2C Nonsense_Mutation p.K3401* 0.39 TCGA-CF-A47Y-01 7 17382623 17382623 C T AHR Nonsense_Mutation p.Q828* 0.08 TCGA-CF-A47Y-01 7 2802277 2802277 G C GNA12 Intron 0.28 TCGA-CF-A47Y-01 7 86827304 86827304 A G TMEM243 Missense_Mutation p.F63L 0.39 tolerated(0.1) possibly_damaging(0.787) TCGA-CF-A47Y-01 7 98961227 98961227 G A ARPC1A Missense_Mutation p.D349N 0.06 deleterious(0.03) possibly_damaging(0.503) TCGA-CF-A47Y-01 8 17924741 17924741 C A ASAH1 Missense_Mutation p.D140Y 0.45 deleterious(0.01) possibly_damaging(0.694) TCGA-CF-A47Y-01 8 24349447 24349447 C T ADAM7 Missense_Mutation p.A463V 0.30 tolerated(0.13) benign(0.136) TCGA-CF-A47Y-01 8 30941252 30941252 A G WRN Missense_Mutation p.Y436C 0.37 tolerated(0.24) benign(0.237) TCGA-CF-A47Y-01 8 87751887 87751887 T C CNGB3 Missense_Mutation p.I69M 0.52 tolerated(0.1) benign(0.006) TCGA-CF-A47Y-01 9 130580469 130580469 A T ENG Missense_Mutation p.V539E 0.45 deleterious(0) probably_damaging(0.931) TCGA-CF-A47Y-01 9 79323649 79323649 C A PRUNE2 Nonsense_Mutation p.E1181* 0.34 TCGA-CF-A47Y-01 9 86586585 86586585 A C HNRNPK Splice_Site p.X336_splice 0.42 TCGA-CF-A47Y-01 9 87635188 87635188 C T NTRK2 Missense_Mutation p.T747M 0.46 deleterious(0) probably_damaging(0.999) TCGA-CF-A47Y-01 X 123519800 123519800 G A TENM1 Missense_Mutation p.L1935F 0.91 tolerated(0.06) benign(0.163) TCGA-CF-A47Y-01 X 123870929 123870929 C A TENM1 Missense_Mutation p.R218S 0.83 deleterious_low_confidence(0) benign(0.392) TCGA-CF-A47Y-01 X 44941858 44941858 C G KDM6A Nonsense_Mutation p.S1061* 0.79 TCGA-CF-A5U8-01 10 93610974 93610974 T A TNKS2 Missense_Mutation p.I899N 0.45 deleterious(0) probably_damaging(0.995) TCGA-CF-A5U8-01 11 123847864 123847864 G T OR10S1 Missense_Mutation p.R179S 0.52 deleterious(0.03) benign(0.259) TCGA-CF-A5U8-01 11 3659939 3659939 G C ART5 3'UTR 0.41 TCGA-CF-A5U8-01 11 57185273 57185273 G A SLC43A3 Silent p.L207L 0.31 TCGA-CF-A5U8-01 11 57571091 57571091 A G CTNND1 Splice_Site p.X474_splice 0.57 TCGA-CF-A5U8-01 11 70011653 70011653 C T ANO1 Silent p.N676N 0.33 TCGA-CF-A5U8-01 11 76170989 76170989 A G C11orf30 Missense_Mutation p.Y144C 0.56 tolerated(0.07) possibly_damaging(0.759) TCGA-CF-A5U8-01 12 1988157 1988157 G C CACNA2D4 Missense_Mutation p.L537V 0.35 tolerated(0.29) benign(0.268) TCGA-CF-A5U8-01 14 24035140 24035140 G A AP1G2 Intron 0.21 TCGA-CF-A5U8-01 14 71199523 71199523 C T MAP3K9 Missense_Mutation p.D869N 0.14 deleterious(0) probably_damaging(0.974) TCGA-CF-A5U8-01 15 25483196 25483196 T C SNORD115-37 RNA 0.47 TCGA-CF-A5U8-01 16 29828297 29828297 G A PAGR1 Missense_Mutation p.E151K 0.42 tolerated(0.22) possibly_damaging(0.834) TCGA-CF-A5U8-01 16 65397187 65397187 C T LINC00922 RNA 0.54 TCGA-CF-A5U8-01 17 26901771 26901771 T C ALDOC Silent p.A161A 0.61 TCGA-CF-A5U8-01 17 40058008 40058008 A C ACLY Missense_Mutation p.I375S 0.53 deleterious(0) possibly_damaging(0.586) TCGA-CF-A5U8-01 17 61611624 61611624 G A KCNH6 Silent p.V351V 0.37 TCGA-CF-A5U8-01 17 61988207 61988207 C T CSHL1 Missense_Mutation p.V30I 0.10 tolerated(1) benign(0.029) TCGA-CF-A5U8-01 17 6329131 6329131 G T AIPL1 Nonsense_Mutation p.Y268* 0.39 TCGA-CF-A5U8-01 17 7577505 7577505 T A TP53 Missense_Mutation p.D259V 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-CF-A5U8-01 18 33704599 33704599 G A SLC39A6 Missense_Mutation p.T285I 0.51 tolerated(0.18) benign(0.003) TCGA-CF-A5U8-01 18 56246897 56246897 G A ALPK2 Silent p.L371L 0.51 TCGA-CF-A5U8-01 18 685934 685934 G T ENOSF1 Missense_Mutation p.P264Q 0.43 deleterious(0.04) benign(0.098) TCGA-CF-A5U8-01 19 36321957 36321957 C A NPHS1 Missense_Mutation p.R1160L 0.05 tolerated(0.14) benign(0.002) TCGA-CF-A5U8-01 19 44739986 44739986 C T ZNF227 Missense_Mutation p.A468V 0.34 tolerated(0.23) benign(0.034) TCGA-CF-A5U8-01 19 45535979 45535979 G T RELB Missense_Mutation p.L393F 0.61 tolerated(0.31) benign(0.035) TCGA-CF-A5U8-01 19 45818761 45818761 C A CKM Missense_Mutation p.R148L 0.46 deleterious(0.01) possibly_damaging(0.851) TCGA-CF-A5U8-01 19 55543595 55543595 C T GP6 Silent p.K79K 0.55 TCGA-CF-A5U8-01 19 6452399 6452399 C A SLC25A23 Missense_Mutation p.R332L 0.24 tolerated(0.09) benign(0.023) TCGA-CF-A5U8-01 1 110765919 110765919 G A KCNC4 Missense_Mutation p.A338T 0.48 tolerated(0.12) possibly_damaging(0.843) TCGA-CF-A5U8-01 1 159842877 159842877 G A CCDC19 Silent p.L478L 0.15 TCGA-CF-A5U8-01 1 185278595 185278595 C T IVNS1ABP Missense_Mutation p.D11N 0.50 deleterious(0) probably_damaging(0.918) TCGA-CF-A5U8-01 1 27428507 27428507 C T SLC9A1 Silent p.R645R 0.40 TCGA-CF-A5U8-01 1 92709888 92709888 C T C1orf146 Missense_Mutation p.S92F 0.12 tolerated(0.72) benign(0.006) TCGA-CF-A5U8-01 22 39483497 39483497 G T APOBEC3G 3'UTR 0.33 TCGA-CF-A5U8-01 2 100623172 100623172 C T AFF3 Silent p.R290R 0.37 TCGA-CF-A5U8-01 2 102636257 102636257 T C IL1R2 Missense_Mutation p.I224T 0.46 deleterious(0) probably_damaging(0.975) TCGA-CF-A5U8-01 2 108443498 108443498 G A RGPD4 Missense_Mutation p.R10Q 0.26 deleterious(0.01) benign(0.238) TCGA-CF-A5U8-01 2 160006934 160006934 C T TANC1 Silent p.T183T 0.07 TCGA-CF-A5U8-01 2 166032688 166032688 C T SCN3A Missense_Mutation p.V73M 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-CF-A5U8-01 2 166775872 166775872 G C TTC21B Missense_Mutation p.L530V 0.07 deleterious(0) probably_damaging(0.967) TCGA-CF-A5U8-01 2 179611844 179611844 A G TTN Intron 0.40 TCGA-CF-A5U8-01 2 219888839 219888839 G A CCDC108 Silent p.P831P 0.45 TCGA-CF-A5U8-01 2 3469389 3469389 G A TRAPPC12 Missense_Mutation p.A567T 0.44 tolerated(0.73) benign(0.023) TCGA-CF-A5U8-01 2 37028509 37028509 T C VIT Missense_Mutation p.I375T 0.46 deleterious(0) possibly_damaging(0.885) TCGA-CF-A5U8-01 2 44021615 44021615 G T DYNC2LI1 Missense_Mutation p.V114F 0.54 deleterious(0.03) possibly_damaging(0.564) TCGA-CF-A5U8-01 2 47705483 47705483 G T MSH2 Silent p.G761G 0.11 TCGA-CF-A5U8-01 3 148871305 148871305 G A HPS3 Missense_Mutation p.V424I 0.46 tolerated(0.2) benign(0.003) TCGA-CF-A5U8-01 3 190165605 190165605 C A TMEM207 Silent p.S29S 0.45 TCGA-CF-A5U8-01 3 48455394 48455394 C T PLXNB1 Silent p.R1432R 0.06 TCGA-CF-A5U8-01 3 5024806 5024806 T A BHLHE40 Missense_Mutation p.I223N 0.40 deleterious(0) probably_damaging(0.999) TCGA-CF-A5U8-01 3 5024807 5024807 C A BHLHE40 Silent p.I223I 0.40 TCGA-CF-A5U8-01 3 9780859 9780859 A G BRPF1 Missense_Mutation p.E259G 0.63 deleterious(0) probably_damaging(0.991) TCGA-CF-A5U8-01 4 1806089 1806089 G T FGFR3 Missense_Mutation p.G372C 0.45 tolerated(0.07) benign(0.029) TCGA-CF-A5U8-01 4 40440406 40440406 C A RBM47 Nonsense_Mutation p.E169* 0.04 TCGA-CF-A5U8-01 4 74310734 74310734 G T AFP Missense_Mutation p.K246N 0.39 deleterious(0) probably_damaging(0.981) TCGA-CF-A5U8-01 4 79461793 79461793 C T FRAS1 Nonsense_Mutation p.R3852* 0.40 TCGA-CF-A5U8-01 5 131008252 131008252 C T FNIP1 Missense_Mutation p.E629K 0.05 tolerated(0.35) benign(0.003) TCGA-CF-A5U8-01 5 140626625 140626625 C G PCDHB15 Silent p.P493P 0.40 TCGA-CF-A5U8-01 5 19544030 19544030 G A CDH18 Silent p.L446L 0.55 TCGA-CF-A5U8-01 5 94259687 94259687 C T MCTP1 Missense_Mutation p.V418M 0.38 tolerated(0.34) benign(0.001) TCGA-CF-A5U8-01 6 118635299 118635299 C T SLC35F1 Missense_Mutation p.R371C 0.35 deleterious(0) probably_damaging(0.953) TCGA-CF-A5U8-01 6 134493808 134493808 G A SGK1 Silent p.I313I 0.32 TCGA-CF-A5U8-01 6 45296210 45296210 T C RUNX2 5'UTR 0.47 TCGA-CF-A5U8-01 6 46630199 46630199 T C SLC25A27 Missense_Mutation p.M157T 0.45 tolerated(0.12) benign(0.206) TCGA-CF-A5U8-01 8 25745418 25745418 G A EBF2 Silent p.I274I 0.41 TCGA-CF-A5U8-01 8 2830779 2830779 T A CSMD1 Missense_Mutation p.H2928L 0.50 benign(0.087) TCGA-CF-A5U8-01 9 130507114 130507114 G A SH2D3C Missense_Mutation p.A510V 0.10 tolerated(0.14) benign(0.006) TCGA-CF-A5U8-01 9 131388960 131388960 C A SPTAN1 Silent p.I2190I 0.20 TCGA-CF-A5U8-01 9 132897343 132897343 C G GPR107 Silent p.V582V 1.00 TCGA-CF-A5U8-01 9 37746460 37746460 C T FRMPD1 Silent p.I1477I 0.75 TCGA-CF-A5U8-01 9 6620187 6620187 C A GLDC Missense_Mutation p.G156V 0.16 deleterious(0.01) probably_damaging(0.921) TCGA-CF-A5U8-01 X 123217301 123217303 TAA C STAG2 Frame_Shift_Del p.N986Sfs*15 0.97 TCGA-CF-A5U8-01 X 44969323 44969323 G A KDM6A Splice_Site p.X1336_splice 0.96 TCGA-CF-A5U8-01 X 99661860 99661860 C T PCDH19 Missense_Mutation p.R579H 0.95 deleterious(0) probably_damaging(0.994) TCGA-CF-A5UA-01 10 102051057 102051057 C A PKD2L1 Splice_Site p.X669_splice 0.43 TCGA-CF-A5UA-01 10 102896476 102896476 G A TLX1 Missense_Mutation p.E267K 0.44 deleterious(0) possibly_damaging(0.481) TCGA-CF-A5UA-01 10 118350685 118350685 C A PNLIPRP1 Missense_Mutation p.A15D 0.28 deleterious(0) benign(0.379) TCGA-CF-A5UA-01 10 118350686 118350686 C A PNLIPRP1 Silent p.A15A 0.28 TCGA-CF-A5UA-01 10 33469144 33469144 C T NRP1 Missense_Mutation p.V878M 0.55 deleterious(0.04) benign(0.399) TCGA-CF-A5UA-01 10 43623817 43623817 C T RET 3'UTR 0.55 TCGA-CF-A5UA-01 10 55892660 55892660 A T PCDH15 Missense_Mutation p.V631D 0.41 deleterious(0) benign(0.356) TCGA-CF-A5UA-01 11 10622526 10622526 C T MRVI1 Silent p.A652A 0.90 TCGA-CF-A5UA-01 11 111848509 111848509 C T DIXDC1 Intron 0.33 TCGA-CF-A5UA-01 11 126120474 126120474 T G FAM118B Missense_Mutation p.M138R 0.40 deleterious(0.01) possibly_damaging(0.548) TCGA-CF-A5UA-01 11 126120483 126120483 C G FAM118B Missense_Mutation p.S141C 0.38 tolerated(0.05) possibly_damaging(0.45) TCGA-CF-A5UA-01 11 30601899 30601899 G C MPPED2 Missense_Mutation p.Q8E 0.89 tolerated(0.34) benign(0.007) TCGA-CF-A5UA-01 11 57982324 57982324 T C OR1S1 Silent p.H36H 0.42 TCGA-CF-A5UA-01 11 60780898 60780898 C T CD6 Missense_Mutation p.S385F 0.45 deleterious(0.01) possibly_damaging(0.873) TCGA-CF-A5UA-01 11 65320683 65320683 C T LTBP3 Missense_Mutation p.A339T 0.32 tolerated(0.52) benign(0.002) TCGA-CF-A5UA-01 11 68773019 68773019 G C MRGPRF Missense_Mutation p.I253M 0.58 deleterious(0.01) probably_damaging(0.991) TCGA-CF-A5UA-01 12 117628125 117628125 G C FBXO21 Missense_Mutation p.S46W 0.11 deleterious(0.02) benign(0.24) TCGA-CF-A5UA-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.50 deleterious(0.04) probably_damaging(0.993) TCGA-CF-A5UA-01 12 38714110 38714110 A G ALG10B Missense_Mutation p.K173E 0.50 tolerated(0.06) benign(0.371) TCGA-CF-A5UA-01 12 52408572 52408572 C T GRASP Silent p.F259F 0.20 TCGA-CF-A5UA-01 12 53039072 53039072 C T KRT2 Missense_Mutation p.G551S 0.20 tolerated(0.6) unknown(0) TCGA-CF-A5UA-01 12 54734300 54734300 C T COPZ1 Intron 0.25 TCGA-CF-A5UA-01 12 54905744 54905744 C G NCKAP1L Missense_Mutation p.L266V 0.18 tolerated(0.31) possibly_damaging(0.458) TCGA-CF-A5UA-01 12 68690759 68690759 C G MDM1 Missense_Mutation p.G659A 0.03 tolerated(0.17) benign(0.202) TCGA-CF-A5UA-01 12 68696517 68696517 G C MDM1 Missense_Mutation p.P619A 0.03 tolerated(0.51) benign(0.024) TCGA-CF-A5UA-01 12 75444305 75444305 T C KCNC2 Missense_Mutation p.K494E 0.79 deleterious(0.01) possibly_damaging(0.849) TCGA-CF-A5UA-01 12 81833788 81833788 G A PPFIA2 Missense_Mutation p.S203F 0.17 deleterious(0) possibly_damaging(0.894) TCGA-CF-A5UA-01 12 83359462 83359462 G T TMTC2 Missense_Mutation p.S603I 0.74 deleterious(0.01) benign(0.37) TCGA-CF-A5UA-01 14 105209437 105209437 G A ADSSL1 Missense_Mutation p.E371K 0.51 deleterious(0) possibly_damaging(0.701) TCGA-CF-A5UA-01 14 105930894 105930894 G T MTA1 Missense_Mutation p.R445L 0.39 tolerated(0.07) probably_damaging(0.997) TCGA-CF-A5UA-01 14 89148322 89148322 G C EML5 Missense_Mutation p.I1012M 0.33 tolerated(0.06) benign(0.135) TCGA-CF-A5UA-01 15 22368671 22368671 A T OR4M2 Silent p.L32L 0.32 TCGA-CF-A5UA-01 15 22368696 22368696 G A OR4M2 Missense_Mutation p.G41R 0.30 deleterious(0) possibly_damaging(0.603) TCGA-CF-A5UA-01 15 29409304 29409304 C T APBA2 Missense_Mutation p.L740F 0.04 deleterious(0) probably_damaging(0.936) TCGA-CF-A5UA-01 15 65918060 65918060 C T SLC24A1 Nonsense_Mutation p.R548* 0.35 TCGA-CF-A5UA-01 15 67571810 67571810 G T IQCH Missense_Mutation p.R116I 0.29 tolerated(0.14) benign(0.165) TCGA-CF-A5UA-01 16 58031995 58031995 C T ZNF319 Missense_Mutation p.G59S 0.33 tolerated(0.93) benign(0.001) TCGA-CF-A5UA-01 16 633482 633482 C T PIGQ Missense_Mutation p.P711S 0.44 deleterious_low_confidence(0) benign(0.032) TCGA-CF-A5UA-01 16 633559 633559 C T PIGQ Silent p.P736P 0.41 TCGA-CF-A5UA-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.42 tolerated(0.19) benign(0.022) TCGA-CF-A5UA-01 17 42455873 42455873 C T ITGA2B Missense_Mutation p.G651S 0.48 tolerated(0.46) benign(0.199) TCGA-CF-A5UA-01 17 4875813 4875813 G A CAMTA2 Missense_Mutation p.S864L 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-CF-A5UA-01 17 57290593 57290593 G C SMG8 Missense_Mutation p.R803S 0.46 tolerated(0.09) benign(0.037) TCGA-CF-A5UA-01 19 1388566 1388566 G C NDUFS7 Missense_Mutation p.Q32H 0.37 tolerated_low_confidence(0.06) benign(0.332) TCGA-CF-A5UA-01 19 19774149 19774149 G T ATP13A1 Silent p.L109L 0.36 TCGA-CF-A5UA-01 19 2832379 2832379 G A ZNF554 Missense_Mutation p.S111N 0.49 deleterious(0.05) benign(0.305) TCGA-CF-A5UA-01 19 3547922 3547922 G T MFSD12 Missense_Mutation p.T254N 0.43 benign(0.155) TCGA-CF-A5UA-01 19 41383142 41383142 G A CYP2A7 Missense_Mutation p.R372C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CF-A5UA-01 19 55450780 55450780 G A NLRP7 Silent p.L469L 0.32 TCGA-CF-A5UA-01 19 56368918 56368918 G T NLRP4 Intron 0.42 TCGA-CF-A5UA-01 19 5778498 5778498 C T CATSPERD Silent p.S736S 0.54 TCGA-CF-A5UA-01 1 104297226 104297226 T A AMY1C Silent p.L328L 0.12 TCGA-CF-A5UA-01 1 230384989 230384989 C T GALNT2 Missense_Mutation p.R293W 0.31 deleterious(0) probably_damaging(1) TCGA-CF-A5UA-01 1 40879786 40879786 C G SMAP2 Intron 0.40 TCGA-CF-A5UA-01 1 6681670 6681670 G A PHF13 Silent p.T292T 0.29 TCGA-CF-A5UA-01 1 76313915 76313915 C G MSH4 Missense_Mutation p.T395R 0.39 deleterious(0.01) possibly_damaging(0.842) TCGA-CF-A5UA-01 1 82450313 82450313 G T LPHN2 Missense_Mutation p.G1093V 0.44 tolerated(0.29) probably_damaging(0.945) TCGA-CF-A5UA-01 1 976686 976686 C T AGRN Silent p.S287S 0.50 TCGA-CF-A5UA-01 20 54579155 54579155 C A CBLN4 Missense_Mutation p.V25F 0.45 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-CF-A5UA-01 20 746035 746035 C T SLC52A3 Silent p.P128P 0.35 TCGA-CF-A5UA-01 22 29533554 29533554 G A KREMEN1 Missense_Mutation p.G286R 0.49 deleterious(0) benign(0.171) TCGA-CF-A5UA-01 2 120194656 120194656 C A TMEM37 Silent p.I71I 0.38 TCGA-CF-A5UA-01 2 183594593 183594593 G A DNAJC10 Missense_Mutation p.G218R 0.43 deleterious(0) probably_damaging(0.997) TCGA-CF-A5UA-01 2 187626455 187626455 C T FAM171B Silent p.I462I 0.28 TCGA-CF-A5UA-01 2 63609079 63609079 T G WDPCP Missense_Mutation p.N529T 0.48 deleterious(0) probably_damaging(0.994) TCGA-CF-A5UA-01 2 6990106 6990106 T A CMPK2 Splice_Site p.X409_splice 0.36 TCGA-CF-A5UA-01 3 178916836 178916836 C G PIK3CA Missense_Mutation p.Q75E 0.33 deleterious(0.01) possibly_damaging(0.872) TCGA-CF-A5UA-01 3 52395199 52395199 G A DNAH1 Missense_Mutation p.G1569R 0.51 probably_damaging(0.999) TCGA-CF-A5UA-01 3 6903420 6903420 G A GRM7 Silent p.A115A 0.52 TCGA-CF-A5UA-01 4 185684403 185684403 A G ACSL1 Missense_Mutation p.V480A 0.37 deleterious(0) probably_damaging(0.983) TCGA-CF-A5UA-01 4 47163454 47163454 G T GABRB1 Silent p.L143L 0.21 TCGA-CF-A5UA-01 4 78082847 78082847 T A CCNG2 Missense_Mutation p.L218M 0.39 tolerated(0.18) benign(0.172) TCGA-CF-A5UA-01 5 135587397 135587397 C T TRPC7 Missense_Mutation p.V507M 0.49 tolerated(0.27) possibly_damaging(0.599) TCGA-CF-A5UA-01 5 141248274 141248274 C T PCDH1 Missense_Mutation p.G255S 0.56 deleterious(0) probably_damaging(0.997) TCGA-CF-A5UA-01 5 3600193 3600193 C T IRX1 Silent p.S377S 0.26 TCGA-CF-A5UA-01 5 39306848 39306848 T G C9 Silent p.I429I 0.23 TCGA-CF-A5UA-01 5 55248168 55248168 C T IL6ST Missense_Mutation p.E488K 0.43 tolerated(0.26) benign(0.002) TCGA-CF-A5UA-01 6 109282854 109282854 G C ARMC2 Silent p.V665V 0.41 TCGA-CF-A5UA-01 6 117591920 117591920 G A VGLL2 Silent p.A202A 0.58 TCGA-CF-A5UA-01 6 138199923 138199923 G A TNFAIP3 Silent p.A447A 0.43 TCGA-CF-A5UA-01 6 151334925 151334925 G A MTHFD1L Missense_Mutation p.G759D 0.33 deleterious(0.01) probably_damaging(1) TCGA-CF-A5UA-01 6 159057860 159057860 C G DYNLT1 Nonstop_Mutation p.*114Sext*49 0.28 TCGA-CF-A5UA-01 6 26124906 26124906 C T HIST1H2AC Intron 0.27 TCGA-CF-A5UA-01 6 50682838 50682838 G T TFAP2D Missense_Mutation p.D17Y 0.26 deleterious(0) probably_damaging(0.974) TCGA-CF-A5UA-01 6 83767542 83767542 C G UBE3D Intron 0.38 TCGA-CF-A5UA-01 7 128645214 128645214 C A TNPO3 Splice_Site p.X185_splice 0.36 TCGA-CF-A5UA-01 7 142627453 142627453 G A TRPV5 Nonsense_Mutation p.R73* 0.38 TCGA-CF-A5UA-01 7 149512310 149512310 C T SSPO RNA 0.45 TCGA-CF-A5UA-01 7 20444339 20444339 C T ITGB8 Silent p.H592H 0.46 TCGA-CF-A5UA-01 7 36763783 36763783 C T AOAH 5'UTR 0.42 TCGA-CF-A5UA-01 7 48450120 48450120 G A ABCA13 Missense_Mutation p.R4025H 0.45 benign(0.091) TCGA-CF-A5UA-01 7 64534215 64534215 C A SNORA15 3'Flank 0.92 TCGA-CF-A5UA-01 7 73731974 73731974 C T CLIP2 Missense_Mutation p.A33V 0.34 tolerated(0.14) benign(0) TCGA-CF-A5UA-01 7 99042455 99042455 C T CPSF4 Silent p.C49C 0.48 TCGA-CF-A5UA-01 8 124348766 124348766 C G ATAD2 Missense_Mutation p.D1020H 0.20 deleterious(0) probably_damaging(0.992) TCGA-CF-A5UA-01 8 145763117 145763117 C G ARHGAP39 Missense_Mutation p.E868Q 0.18 deleterious(0.01) possibly_damaging(0.604) TCGA-CF-A5UA-01 8 1950115 1950115 G A KBTBD11 Missense_Mutation p.D253N 0.36 deleterious(0) benign(0.067) TCGA-CF-A5UA-01 8 1950616 1950616 G A KBTBD11 Missense_Mutation p.E420K 0.60 deleterious(0) probably_damaging(0.999) TCGA-CF-A5UA-01 8 48716043 48716043 T C PRKDC Splice_Site p.X3249_splice 0.24 TCGA-CF-A5UA-01 9 116857341 116857341 G A KIF12 Nonsense_Mutation p.R223* 0.43 TCGA-CF-A5UA-01 X 129045885 129045885 C G UTP14A Silent p.L175L 0.82 TCGA-CF-A7I0-01 10 104679304 104679304 G A CNNM2 Missense_Mutation p.G356E 0.29 deleterious(0) probably_damaging(0.999) TCGA-CF-A7I0-01 10 51592492 51592492 T C TIMM23 3'UTR 0.16 TCGA-CF-A7I0-01 10 79745871 79745871 G T POLR3A Missense_Mutation p.T983N 0.27 tolerated(0.33) benign(0.021) TCGA-CF-A7I0-01 12 100452269 100452269 G A UHRF1BP1L Missense_Mutation p.S929L 0.25 tolerated(0.28) benign(0.002) TCGA-CF-A7I0-01 12 109577201 109577201 G C ACACB Splice_Site 0.29 TCGA-CF-A7I0-01 12 6559751 6559751 G A CD27 Missense_Mutation p.D165N 0.34 tolerated(0.13) benign(0.004) TCGA-CF-A7I0-01 12 6559799 6559799 G A CD27 Intron 0.33 TCGA-CF-A7I0-01 13 29599705 29599705 G C MTUS2 Silent p.S300S 0.31 TCGA-CF-A7I0-01 13 36445426 36445426 C T DCLK1 Missense_Mutation p.R292H 0.28 tolerated(0.09) possibly_damaging(0.715) TCGA-CF-A7I0-01 15 52905938 52905938 G C FAM214A Missense_Mutation p.H45D 0.42 deleterious(0) probably_damaging(0.999) TCGA-CF-A7I0-01 15 87066137 87066137 C G AGBL1 Silent p.L838L 0.32 TCGA-CF-A7I0-01 16 11444539 11444539 C T RMI2 Silent p.S112S 0.30 TCGA-CF-A7I0-01 16 49672361 49672361 G A ZNF423 Silent p.T234T 0.36 TCGA-CF-A7I0-01 16 9984937 9984937 C T GRIN2A Nonsense_Mutation p.W343* 0.33 TCGA-CF-A7I0-01 17 1028718 1028718 A G ABR Intron 0.31 TCGA-CF-A7I0-01 17 39023318 39023318 C T KRT12 Missense_Mutation p.G41S 0.23 tolerated(0.39) unknown(0) TCGA-CF-A7I0-01 17 39674669 39674669 G T KRT15 Silent p.I137I 0.29 TCGA-CF-A7I0-01 17 55019443 55019443 C T COIL Missense_Mutation p.E534K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A7I0-01 17 8701572 8701572 G T MFSD6L Silent p.V289V 0.32 TCGA-CF-A7I0-01 18 21508633 21508633 C T LAMA3 Silent p.F2780F 0.33 TCGA-CF-A7I0-01 18 46448213 46448213 C T SMAD7 Silent p.K270K 0.50 TCGA-CF-A7I0-01 19 36207413 36207413 A T ZBTB32 Missense_Mutation p.Q408L 0.32 deleterious(0) benign(0.227) TCGA-CF-A7I0-01 19 42930736 42930736 G A LIPE Missense_Mutation p.T189M 0.33 tolerated_low_confidence(0.07) benign(0.117) TCGA-CF-A7I0-01 19 9324997 9324997 C T OR7D4 Missense_Mutation p.E173K 0.29 tolerated(0.13) benign(0.042) TCGA-CF-A7I0-01 1 11561875 11561875 G A PTCHD2 Missense_Mutation p.E276K 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-CF-A7I0-01 1 117617996 117617996 C G TTF2 Missense_Mutation p.Q264E 0.34 tolerated(1) benign(0.003) TCGA-CF-A7I0-01 1 146726621 146726621 G C CHD1L Missense_Mutation p.E113Q 0.30 deleterious(0) probably_damaging(0.946) TCGA-CF-A7I0-01 1 190068042 190068042 G A BRINP3 Silent p.L469L 0.39 TCGA-CF-A7I0-01 1 20005443 20005443 T A HTR6 Missense_Mutation p.F302Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-CF-A7I0-01 1 26308867 26308867 C T PAFAH2 Silent p.L218L 0.36 TCGA-CF-A7I0-01 1 32650145 32650145 G A TXLNA Silent p.L175L 0.29 TCGA-CF-A7I0-01 1 35858283 35858283 G T ZMYM4 Missense_Mutation p.D922Y 0.34 deleterious(0.01) benign(0.168) TCGA-CF-A7I0-01 1 36055608 36055608 G A TFAP2E Missense_Mutation p.R288H 0.08 deleterious(0) probably_damaging(0.973) TCGA-CF-A7I0-01 1 3677874 3677874 G A CCDC27 Silent p.Q247Q 0.26 TCGA-CF-A7I0-01 1 67147598 67147598 C T SGIP1 Silent p.S287S 0.08 TCGA-CF-A7I0-01 1 94496055 94496055 G A ABCA4 Silent p.F1427F 0.35 TCGA-CF-A7I0-01 2 152276858 152276858 G A RIF1 Missense_Mutation p.E220K 0.46 deleterious(0) probably_damaging(0.965) TCGA-CF-A7I0-01 2 185802577 185802577 A G ZNF804A Silent p.R818R 0.47 TCGA-CF-A7I0-01 2 189871696 189871696 G A COL3A1 Missense_Mutation p.A1079T 0.42 probably_damaging(0.988) TCGA-CF-A7I0-01 2 79363900 79363900 G A REG1P RNA 0.50 TCGA-CF-A7I0-01 3 42917160 42917160 C T CYP8B1 Missense_Mutation p.R50Q 0.29 tolerated(0.09) probably_damaging(0.999) TCGA-CF-A7I0-01 3 48462746 48462746 T C PLXNB1 Silent p.S567S 0.22 TCGA-CF-A7I0-01 3 50368087 50368087 G T RASSF1 Silent p.L320L 0.32 TCGA-CF-A7I0-01 4 1746695 1746695 G T TACC3 Silent p.L824L 0.19 TCGA-CF-A7I0-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.37 deleterious(0.01) possibly_damaging(0.594) TCGA-CF-A7I0-01 4 2695412 2695412 C T FAM193A Missense_Mutation p.S677L 0.28 tolerated(0.45) benign(0.004) TCGA-CF-A7I0-01 4 48069478 48069478 T C TXK 3'UTR 0.36 TCGA-CF-A7I0-01 4 68829194 68829194 A G TMPRSS11A 5'UTR 0.33 TCGA-CF-A7I0-01 4 90169782 90169782 C T GPRIN3 Missense_Mutation p.E494K 0.28 deleterious(0.03) possibly_damaging(0.722) TCGA-CF-A7I0-01 5 118970106 118970106 G A FAM170A Silent p.L221L 0.36 TCGA-CF-A7I0-01 5 1201811 1201811 C T SLC6A19 Missense_Mutation p.P16S 0.41 tolerated(0.11) benign(0.341) TCGA-CF-A7I0-01 5 132160030 132160030 G C SHROOM1 Silent p.L441L 0.46 TCGA-CF-A7I0-01 5 132160503 132160503 G C SHROOM1 Missense_Mutation p.Q349E 0.39 deleterious(0.02) benign(0.006) TCGA-CF-A7I0-01 5 132219228 132219228 A G AFF4 Silent p.P1056P 0.26 TCGA-CF-A7I0-01 5 140264082 140264082 C T PCDHA13 Silent p.S743S 0.05 TCGA-CF-A7I0-01 5 36111293 36111293 C T LMBRD2 Missense_Mutation p.D570N 0.33 deleterious(0) possibly_damaging(0.907) TCGA-CF-A7I0-01 6 149918645 149918645 G A KATNA1 Missense_Mutation p.S383L 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-CF-A7I0-01 6 36651956 36651957 - A CDKN1A Frame_Shift_Ins p.S27Kfs*9 0.30 TCGA-CF-A7I0-01 6 54191662 54191662 G A TINAG Missense_Mutation p.R191H 0.29 deleterious(0.03) benign(0.062) TCGA-CF-A7I0-01 7 100731813 100731813 G T TRIM56 Missense_Mutation p.G407V 0.42 tolerated(0.1) benign(0.186) TCGA-CF-A7I0-01 7 1542571 1542571 C T INTS1 Silent p.P105P 0.24 TCGA-CF-A7I0-01 7 98649958 98649958 G A SMURF1 Silent p.F197F 0.36 TCGA-CF-A7I0-01 8 37706159 37706159 G A BRF2 Nonsense_Mutation p.R57* 0.37 TCGA-CF-A7I0-01 9 125865641 125865641 G A RABGAP1 3'UTR 0.29 TCGA-CF-A7I0-01 9 126144610 126144610 C T DENND1A Missense_Mutation p.G711S 0.24 deleterious(0.02) probably_damaging(0.925) TCGA-CF-A7I0-01 9 131386673 131386673 G T SPTAN1 Nonsense_Mutation p.E1967* 0.22 TCGA-CF-A7I0-01 9 139652449 139652449 C T LCN8 5'UTR 0.24 TCGA-CF-A7I0-01 X 106092558 106092558 C T TBC1D8B Intron 0.65 TCGA-CF-A7I0-01 X 7812111 7812111 G A VCX 3'UTR 0.26 TCGA-CF-A8HX-01 10 115610113 115610113 G A DCLRE1A Missense_Mutation p.H251Y 0.48 tolerated(0.07) benign(0.049) TCGA-CF-A8HX-01 10 356022 356022 C T DIP2C Missense_Mutation p.G1312E 0.32 deleterious(0) probably_damaging(1) TCGA-CF-A8HX-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.37 TCGA-CF-A8HX-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.47 TCGA-CF-A8HX-01 11 130318924 130318924 C G ADAMTS15 Missense_Mutation p.S19C 0.62 deleterious(0.02) benign(0.395) TCGA-CF-A8HX-01 11 17113139 17113139 G A PIK3C2A Silent p.Y1569Y 0.05 TCGA-CF-A8HX-01 11 6261447 6261447 G A CNGA4 Silent p.L141L 0.41 TCGA-CF-A8HX-01 12 132589485 132589485 C T EP400NL Missense_Mutation p.P175L 0.54 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-CF-A8HX-01 12 21623114 21623114 T C PYROXD1 3'UTR 0.14 TCGA-CF-A8HX-01 12 49717795 49717795 G A TROAP Silent p.V104V 0.66 TCGA-CF-A8HX-01 12 53448985 53448985 G A TENC1 Missense_Mutation p.E190K 0.51 deleterious(0) benign(0.253) TCGA-CF-A8HX-01 12 56994576 56994582 TTCTTGA - BAZ2A Frame_Shift_Del p.F1497Lfs*4 0.55 TCGA-CF-A8HX-01 12 93804893 93804893 G A UBE2N Silent p.F71F 0.63 TCGA-CF-A8HX-01 14 105398391 105398391 C T PLD4 Silent p.F367F 0.46 TCGA-CF-A8HX-01 14 23874499 23874499 C G MYH6 Missense_Mutation p.K145N 0.50 deleterious(0.01) probably_damaging(0.913) TCGA-CF-A8HX-01 14 33293779 33293779 G T AKAP6 Nonsense_Mutation p.E2254* 0.08 TCGA-CF-A8HX-01 14 59970768 59970768 C T JKAMP Missense_Mutation p.S305L 0.45 tolerated(0.25) benign(0.009) TCGA-CF-A8HX-01 14 65233474 65233474 G A SPTB Silent p.S2105S 0.50 TCGA-CF-A8HX-01 15 102515330 102515330 G A WASH3P 3'Flank 0.38 TCGA-CF-A8HX-01 15 55722963 55722963 C T DYX1C1 Missense_Mutation p.E390K 0.57 tolerated(0.09) probably_damaging(0.938) TCGA-CF-A8HX-01 15 56387243 56387243 C G RFX7 Missense_Mutation p.E895Q 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CF-A8HX-01 15 90144794 90144794 G C TICRR Missense_Mutation p.L774F 0.44 deleterious(0.03) probably_damaging(0.937) TCGA-CF-A8HX-01 16 4935277 4935277 C T PPL Missense_Mutation p.E1127K 0.89 tolerated(0.1) possibly_damaging(0.816) TCGA-CF-A8HX-01 16 66436833 66436833 G C CDH5 Missense_Mutation p.A706P 0.50 tolerated(0.23) probably_damaging(0.994) TCGA-CF-A8HX-01 16 69200886 69200886 G C CIRH1A Intron 0.29 TCGA-CF-A8HX-01 17 3402299 3402299 G A ASPA Missense_Mutation p.A287T 0.36 deleterious(0) possibly_damaging(0.692) TCGA-CF-A8HX-01 17 40948205 40948205 C T WNK4 Missense_Mutation p.R1166W 0.47 deleterious(0) probably_damaging(0.997) TCGA-CF-A8HX-01 17 8351882 8351882 C T NDEL1 Missense_Mutation p.S135L 0.52 deleterious(0) probably_damaging(0.999) TCGA-CF-A8HX-01 18 14179456 14179456 C A ANKRD20A5P RNA 0.47 TCGA-CF-A8HX-01 19 50204876 50204876 G C CPT1C Missense_Mutation p.W226C 0.41 deleterious(0) probably_damaging(0.937) TCGA-CF-A8HX-01 19 56156581 56156581 G A ZNF581 3'UTR 0.56 TCGA-CF-A8HX-01 1 151542229 151542229 G A TUFT1 Missense_Mutation p.D193N 0.30 deleterious(0) possibly_damaging(0.839) TCGA-CF-A8HX-01 1 152193325 152193325 G T HRNR Missense_Mutation p.H260Q 0.27 unknown(0) TCGA-CF-A8HX-01 1 155175080 155175080 C T THBS3 Missense_Mutation p.G105D 0.05 tolerated(0.09) possibly_damaging(0.796) TCGA-CF-A8HX-01 1 156554998 156554998 G A TTC24 Silent p.V477V 0.27 TCGA-CF-A8HX-01 1 19528282 19528282 C A UBR4 Missense_Mutation p.K68N 0.34 possibly_damaging(0.622) TCGA-CF-A8HX-01 1 35579051 35579051 A G ZMYM1 Silent p.L540L 0.54 TCGA-CF-A8HX-01 1 47685515 47685515 G A TAL1 Silent p.C291C 0.45 TCGA-CF-A8HX-01 1 47882374 47882374 C T FOXE3 Silent p.F129F 0.42 TCGA-CF-A8HX-01 20 31024544 31024544 C G ASXL1 Missense_Mutation p.N1343K 0.31 tolerated_low_confidence(0.25) benign(0.118) TCGA-CF-A8HX-01 20 3778381 3778381 G A CDC25B Missense_Mutation p.E105K 0.56 deleterious(0.01) probably_damaging(0.97) TCGA-CF-A8HX-01 20 60712472 60712472 G A PSMA7 Missense_Mutation p.S201L 0.32 tolerated(0.19) benign(0.011) TCGA-CF-A8HX-01 21 37787643 37787643 C A CHAF1B Missense_Mutation p.P515Q 0.46 tolerated_low_confidence(0.21) benign(0.007) TCGA-CF-A8HX-01 21 43732343 43732353 GGCCGGGGGCA - TFF3 3'UTR 0.23 TCGA-CF-A8HX-01 22 19776237 19776237 C T GNB1L Missense_Mutation p.A327T 0.06 tolerated_low_confidence(0.8) benign(0.002) TCGA-CF-A8HX-01 22 39096075 39096075 C T JOSD1 5'UTR 0.83 TCGA-CF-A8HX-01 2 109300550 109300550 G C LIMS1 3'UTR 0.56 TCGA-CF-A8HX-01 2 179482195 179482195 G C TTN Missense_Mutation p.Q15873E 0.32 TCGA-CF-A8HX-01 2 211464172 211464172 C T CPS1 Missense_Mutation p.A485V 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A8HX-01 2 231176217 231176217 C G SP140 Missense_Mutation p.I804M 0.68 deleterious(0) probably_damaging(1) TCGA-CF-A8HX-01 2 24493567 24493567 C T ITSN2 Missense_Mutation p.M776I 0.42 tolerated(1) unknown(0) TCGA-CF-A8HX-01 2 32703706 32703706 C T BIRC6 Missense_Mutation p.L2358F 0.42 probably_damaging(0.994) TCGA-CF-A8HX-01 2 48809618 48809618 C G STON1-GTF2A1L Missense_Mutation p.Q616E 0.47 deleterious(0) probably_damaging(0.994) TCGA-CF-A8HX-01 2 91843425 91843425 G A AC027612.6 RNA 0.26 TCGA-CF-A8HX-01 3 119156931 119156931 G C TMEM39A Missense_Mutation p.L199V 0.50 deleterious(0.03) probably_damaging(0.998) TCGA-CF-A8HX-01 3 161214645 161214645 C T OTOL1 Missense_Mutation p.A17V 0.11 tolerated(0.13) unknown(0) TCGA-CF-A8HX-01 3 186572508 186572508 G C ADIPOQ 3'UTR 0.41 TCGA-CF-A8HX-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.43 deleterious(0.04) possibly_damaging(0.846) TCGA-CF-A8HX-01 3 9106143 9106143 G A SRGAP3 Silent p.L203L 0.34 TCGA-CF-A8HX-01 4 187455657 187455657 G A MTNR1A Missense_Mutation p.P80L 0.41 deleterious(0) benign(0.031) TCGA-CF-A8HX-01 4 187510100 187510100 C T FAT1 Silent p.A4471A 0.47 TCGA-CF-A8HX-01 4 88231439 88231439 C T HSD17B13 Missense_Mutation p.M256I 0.38 tolerated(0.21) benign(0.008) TCGA-CF-A8HX-01 4 88231445 88231445 C T HSD17B13 Silent p.K254K 0.34 TCGA-CF-A8HX-01 4 88235080 88235080 C G HSD17B13 Missense_Mutation p.R197T 0.47 deleterious(0.01) possibly_damaging(0.497) TCGA-CF-A8HX-01 5 138287545 138287545 C T SIL1 Missense_Mutation p.E266K 0.50 deleterious(0) possibly_damaging(0.699) TCGA-CF-A8HX-01 5 138643555 138643555 G A MATR3 Missense_Mutation p.E151K 0.53 tolerated(0.06) benign(0.021) TCGA-CF-A8HX-01 5 171777455 171777455 G A SH3PXD2B Silent p.N308N 0.72 TCGA-CF-A8HX-01 5 177676193 177676193 C T COL23A1 Silent p.Q358Q 0.06 TCGA-CF-A8HX-01 5 180377618 180377618 G A BTNL8 3'UTR 0.88 TCGA-CF-A8HX-01 5 40681296 40681296 G A PTGER4 Silent p.L67L 0.48 TCGA-CF-A8HX-01 6 107566773 107566774 AT - PDSS2 Frame_Shift_Del p.Y227Sfs*2 0.32 TCGA-CF-A8HX-01 6 117642403 117642403 G A ROS1 Intron 0.42 TCGA-CF-A8HX-01 6 142519734 142519734 G A VTA1 Missense_Mutation p.E227K 0.32 tolerated(0.3) benign(0.207) TCGA-CF-A8HX-01 6 159460164 159460164 C T TAGAP Silent p.Q255Q 0.45 TCGA-CF-A8HX-01 6 30459420 30459420 G A HLA-E Silent p.K331K 0.38 TCGA-CF-A8HX-01 7 102835929 102835929 G A DPY19L2P2 RNA 0.50 TCGA-CF-A8HX-01 7 123104919 123104919 G A IQUB Silent p.L576L 0.51 TCGA-CF-A8HX-01 7 134936545 134936545 C T STRA8 Intron 0.38 TCGA-CF-A8HX-01 7 142988744 142988744 G A CASP2 Silent p.E62E 0.45 TCGA-CF-A8HX-01 8 10466738 10466738 G T RP1L1 Missense_Mutation p.L1624M 0.62 unknown(0) TCGA-CF-A8HX-01 8 144680527 144680527 G A TIGD5 Missense_Mutation p.E152K 0.75 deleterious(0.01) probably_damaging(0.989) TCGA-CF-A8HX-01 9 140446833 140446833 C G MRPL41 Missense_Mutation p.I100M 0.93 deleterious(0) probably_damaging(0.988) TCGA-CF-A8HX-01 9 140997228 140997228 G A CACNA1B Missense_Mutation p.G1763E 0.96 deleterious(0) probably_damaging(0.992) TCGA-CF-A8HX-01 X 100077306 100077306 G A CSTF2 Silent p.E68E 0.87 TCGA-CF-A8HX-01 X 152826321 152826321 C T ATP2B3 Silent p.I1009I 0.40 TCGA-CF-A8HX-01 X 153216826 153216826 G T HCFC1 Missense_Mutation p.P1831Q 0.45 deleterious(0) probably_damaging(0.991) TCGA-CF-A8HX-01 X 153458957 153458957 G A OPN1MW Missense_Mutation p.R268H 0.33 deleterious(0.03) possibly_damaging(0.704) TCGA-CF-A8HX-01 X 15549531 15549531 G C BMX Splice_Site p.X340_splice 0.40 TCGA-CF-A8HX-01 X 15574233 15574233 C T BMX Missense_Mutation p.S664F 0.42 tolerated(0.65) probably_damaging(0.954) TCGA-CF-A8HX-01 X 53622345 53622345 C A HUWE1 Missense_Mutation p.R1061L 0.73 probably_damaging(0.99) TCGA-CF-A8HX-01 X 79282253 79282253 G A TBX22 Silent p.E228E 0.70 TCGA-CF-A8HY-01 10 27436294 27436294 G T YME1L1 Intron 1.00 TCGA-CF-A8HY-01 11 117222565 117222565 A G CEP164 Missense_Mutation p.D85G 0.88 deleterious(0) probably_damaging(0.991) TCGA-CF-A8HY-01 11 119243919 119243919 C A USP2 Missense_Mutation p.R91L 0.85 tolerated_low_confidence(0.31) benign(0.038) TCGA-CF-A8HY-01 11 57100235 57100235 C A SSRP1 Missense_Mutation p.R211L 0.45 deleterious(0) probably_damaging(0.999) TCGA-CF-A8HY-01 11 62358928 62358928 C A TUT1 Silent p.S48S 0.50 TCGA-CF-A8HY-01 11 63312334 63312334 G T RARRES3 Silent p.L120L 0.42 TCGA-CF-A8HY-01 11 67022438 67022438 G T KDM2A Missense_Mutation p.R1134L 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-CF-A8HY-01 11 67022462 67022462 C T KDM2A Missense_Mutation p.S1142L 0.35 tolerated(0.06) possibly_damaging(0.895) TCGA-CF-A8HY-01 11 67022500 67022500 G C KDM2A Missense_Mutation p.E1155Q 0.47 deleterious(0) probably_damaging(0.978) TCGA-CF-A8HY-01 11 67022546 67022546 C A KDM2A 3'UTR 0.38 TCGA-CF-A8HY-01 11 92599930 92599930 C A FAT3 Missense_Mutation p.F3894L 0.42 probably_damaging(0.999) TCGA-CF-A8HY-01 12 120595718 120595718 G A GCN1L1 Nonsense_Mutation p.Q1008* 0.59 TCGA-CF-A8HY-01 12 122861943 122861943 C G CLIP1 Missense_Mutation p.R217T 0.17 deleterious(0) probably_damaging(0.994) TCGA-CF-A8HY-01 12 132549432 132549432 G T EP400 Splice_Site p.X2851_splice 0.38 TCGA-CF-A8HY-01 12 21799929 21799929 G C LDHB Missense_Mutation p.L51V 0.44 deleterious(0.01) possibly_damaging(0.569) TCGA-CF-A8HY-01 12 49427590 49427590 C A KMT2D Missense_Mutation p.G3633V 0.55 probably_damaging(0.997) TCGA-CF-A8HY-01 12 49427591 49427591 C A KMT2D Missense_Mutation p.G3633C 0.55 probably_damaging(0.998) TCGA-CF-A8HY-01 12 53202535 53202535 G T KRT4 Missense_Mutation p.R312S 0.40 deleterious(0) benign(0.355) TCGA-CF-A8HY-01 12 57389789 57389789 G T GPR182 Missense_Mutation p.V266F 0.17 deleterious(0) probably_damaging(0.959) TCGA-CF-A8HY-01 12 57921739 57921740 - AGCC MBD6 Frame_Shift_Ins p.P784Sfs*10 0.39 TCGA-CF-A8HY-01 12 88500826 88500826 T G CEP290 Silent p.R845R 0.20 TCGA-CF-A8HY-01 12 94575247 94575247 C G PLXNC1 Nonsense_Mutation p.S410* 0.13 TCGA-CF-A8HY-01 13 32711076 32711076 C T FRY Silent p.H382H 0.59 TCGA-CF-A8HY-01 14 74951129 74951129 C A NPC2 Nonsense_Mutation p.E118* 0.87 TCGA-CF-A8HY-01 15 54919358 54919358 G T UNC13C 3'UTR 0.24 TCGA-CF-A8HY-01 16 11375074 11375074 G T PRM1 Missense_Mutation p.R8S 0.57 unknown(0) TCGA-CF-A8HY-01 16 2814987 2814987 G T SRRM2 Silent p.P1486P 0.64 TCGA-CF-A8HY-01 16 30035132 30035132 C T C16orf92 Missense_Mutation p.P72L 0.29 deleterious(0) probably_damaging(0.96) TCGA-CF-A8HY-01 16 50359706 50359706 T C BRD7 Silent p.L428L 0.58 TCGA-CF-A8HY-01 16 70926402 70926402 T A HYDIN Silent p.T3093T 0.07 TCGA-CF-A8HY-01 16 76572091 76572091 G T CNTNAP4 Missense_Mutation p.S952I 0.21 deleterious(0) probably_damaging(0.95) TCGA-CF-A8HY-01 16 815688 815688 C G MSLN Intron 0.37 TCGA-CF-A8HY-01 16 84118645 84118645 A C MBTPS1 Missense_Mutation p.L410R 0.29 deleterious(0) probably_damaging(1) TCGA-CF-A8HY-01 17 10351187 10351187 C T MYH4 Missense_Mutation p.R1638H 0.20 deleterious(0.03) probably_damaging(0.969) TCGA-CF-A8HY-01 17 26898136 26898136 C A PIGS Missense_Mutation p.W35C 0.44 deleterious(0) probably_damaging(1) TCGA-CF-A8HY-01 17 26898137 26898137 C A PIGS Missense_Mutation p.W35L 0.45 deleterious(0) probably_damaging(1) TCGA-CF-A8HY-01 17 32965024 32965024 G T TMEM132E Nonsense_Mutation p.E910* 0.50 TCGA-CF-A8HY-01 17 63052448 63052448 G A GNA13 Silent p.I88I 0.15 TCGA-CF-A8HY-01 17 73753773 73753773 C G ITGB4 3'UTR 0.31 TCGA-CF-A8HY-01 17 7496152 7496152 G A FXR2 Missense_Mutation p.P530L 0.46 tolerated(0.11) benign(0.069) TCGA-CF-A8HY-01 17 81042826 81042826 C T METRNL Silent p.H61H 0.22 TCGA-CF-A8HY-01 18 2775775 2775778 TTAT - SMCHD1 Frame_Shift_Del p.I1741Lfs*11 0.86 TCGA-CF-A8HY-01 18 3879135 3879135 C G DLGAP1 Missense_Mutation p.E312Q 0.71 tolerated(0.51) possibly_damaging(0.528) TCGA-CF-A8HY-01 18 3879150 3879150 C A DLGAP1 Nonsense_Mutation p.E307* 0.71 TCGA-CF-A8HY-01 19 11411886 11411886 G T TSPAN16 Missense_Mutation p.V118L 0.23 tolerated(0.37) benign(0.022) TCGA-CF-A8HY-01 19 15302945 15302945 G A NOTCH3 Missense_Mutation p.R169C 0.47 deleterious(0.02) possibly_damaging(0.846) TCGA-CF-A8HY-01 19 33444672 33444672 G C CEP89 Missense_Mutation p.S114C 0.48 deleterious(0.03) probably_damaging(0.991) TCGA-CF-A8HY-01 19 33471061 33471061 G A RHPN2 Silent p.I634I 0.18 TCGA-CF-A8HY-01 19 37441022 37441022 G T ZNF568 Nonsense_Mutation p.E323* 0.17 TCGA-CF-A8HY-01 19 48866620 48866646 GCGGGGCTCCCTGGGGTTCCACATCTT - TMEM143 In_Frame_Del p.K56_R64del 0.44 TCGA-CF-A8HY-01 19 49657787 49657787 G T HRC Silent p.P236P 0.33 TCGA-CF-A8HY-01 19 50001257 50001257 G C RPS11 Missense_Mutation p.E103Q 0.47 tolerated(0.07) possibly_damaging(0.824) TCGA-CF-A8HY-01 19 9213826 9213826 G A OR7G2 Silent p.L53L 0.46 TCGA-CF-A8HY-01 1 11189857 11189857 G T MTOR Silent p.A1884A 0.42 TCGA-CF-A8HY-01 1 155638483 155638483 C G YY1AP1 Missense_Mutation p.A410P 0.48 tolerated(0.07) probably_damaging(0.972) TCGA-CF-A8HY-01 1 193110996 193110996 A G CDC73 Missense_Mutation p.M177V 0.67 deleterious(0.01) benign(0.132) TCGA-CF-A8HY-01 1 19652839 19652839 C T PQLC2 Silent p.A161A 0.35 TCGA-CF-A8HY-01 1 231349574 231349574 G T TRIM67 Missense_Mutation p.V713L 0.20 tolerated(0.05) benign(0.319) TCGA-CF-A8HY-01 1 236720605 236720605 C A HEATR1 Nonsense_Mutation p.E1749* 0.20 TCGA-CF-A8HY-01 1 237730019 237730019 C T RYR2 Nonsense_Mutation p.Q1123* 0.56 TCGA-CF-A8HY-01 1 27689389 27689389 G A MAP3K6 Silent p.F365F 0.52 TCGA-CF-A8HY-01 1 43905380 43905380 G A SZT2 Missense_Mutation p.E2271K 0.13 tolerated(0.31) benign(0.049) TCGA-CF-A8HY-01 1 43905382 43905382 G A SZT2 Silent p.E2271E 0.14 TCGA-CF-A8HY-01 1 43905576 43905576 G A SZT2 Missense_Mutation p.R2299Q 0.11 tolerated(0.16) benign(0.287) TCGA-CF-A8HY-01 1 43906927 43906927 G A SZT2 Missense_Mutation p.D2406N 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-CF-A8HY-01 1 43906984 43906984 G A SZT2 Missense_Mutation p.E2425K 0.10 tolerated(0.1) probably_damaging(0.945) TCGA-CF-A8HY-01 1 43907029 43907029 G A SZT2 Missense_Mutation p.D2440N 0.05 tolerated(0.14) benign(0.142) TCGA-CF-A8HY-01 1 43907710 43907710 G A SZT2 Silent p.G2537G 0.13 TCGA-CF-A8HY-01 1 43907974 43907974 G A SZT2 Missense_Mutation p.D2580N 0.12 tolerated(0.5) benign(0.399) TCGA-CF-A8HY-01 1 43908031 43908031 G A SZT2 Missense_Mutation p.D2599N 0.11 tolerated(0.09) possibly_damaging(0.479) TCGA-CF-A8HY-01 1 43911847 43911847 C T SZT2 Intron 0.10 TCGA-CF-A8HY-01 1 43912030 43912030 C T SZT2 Silent p.V2948V 0.11 TCGA-CF-A8HY-01 1 43912062 43912062 C T SZT2 Missense_Mutation p.P2959L 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-CF-A8HY-01 1 43912772 43912772 C T SZT2 Silent p.T3016T 0.14 TCGA-CF-A8HY-01 1 43918005 43918005 G A SZT2 3'UTR 0.27 TCGA-CF-A8HY-01 1 45297832 45297832 G A PTCH2 Silent p.L149L 0.06 TCGA-CF-A8HY-01 1 45297859 45297859 G A PTCH2 Silent p.L140L 0.06 TCGA-CF-A8HY-01 20 30584921 30584921 C T XKR7 Silent p.D467D 0.28 TCGA-CF-A8HY-01 20 34435311 34435311 G T PHF20 Missense_Mutation p.D99Y 0.49 deleterious(0) possibly_damaging(0.874) TCGA-CF-A8HY-01 20 62192487 62192487 G C HELZ2 Missense_Mutation p.A2365G 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A8HY-01 21 46888205 46888205 G A COL18A1 Silent p.P232P 0.12 TCGA-CF-A8HY-01 22 36006981 36006981 G A MB Silent p.L90L 0.53 TCGA-CF-A8HY-01 22 46611100 46611100 C T PPARA Missense_Mutation p.S80L 0.39 tolerated(0.2) benign(0.368) TCGA-CF-A8HY-01 22 46611139 46611139 C T PPARA Missense_Mutation p.S93F 0.29 tolerated(0.4) benign(0.021) TCGA-CF-A8HY-01 22 47193357 47193357 C T TBC1D22A Silent p.A159A 0.14 TCGA-CF-A8HY-01 22 50616273 50616273 G T PANX2 Missense_Mutation p.V378L 0.44 deleterious(0.01) possibly_damaging(0.857) TCGA-CF-A8HY-01 2 11351913 11351913 C T ROCK2 Silent p.Q699Q 0.35 TCGA-CF-A8HY-01 2 118582580 118582580 G A DDX18 Missense_Mutation p.R424Q 0.22 tolerated(0.25) benign(0.081) TCGA-CF-A8HY-01 2 166514423 166514423 G T CSRNP3 Missense_Mutation p.V101L 0.27 tolerated(0.17) benign(0.119) TCGA-CF-A8HY-01 2 238277486 238277486 C A COL6A3 Silent p.V1540V 0.30 TCGA-CF-A8HY-01 2 242046067 242046067 C T PASK Missense_Mutation p.E1303K 0.07 tolerated_low_confidence(0.2) benign(0.108) TCGA-CF-A8HY-01 2 26703812 26703812 G T OTOF Missense_Mutation p.L549M 0.16 tolerated(1) benign(0.034) TCGA-CF-A8HY-01 2 66795849 66795849 G T MEIS1 Missense_Mutation p.V359L 0.39 tolerated(0.32) benign(0.009) TCGA-CF-A8HY-01 2 70503879 70503879 G C PCYOX1 Missense_Mutation p.K291N 0.18 tolerated(0.26) benign(0.12) TCGA-CF-A8HY-01 2 8957795 8957795 C A KIDINS220 Missense_Mutation p.V87L 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-CF-A8HY-01 3 121395835 121395835 G C GOLGB1 Missense_Mutation p.L3028V 0.06 possibly_damaging(0.874) TCGA-CF-A8HY-01 3 123008753 123008753 C T ADCY5 Missense_Mutation p.G1126S 0.72 deleterious(0) probably_damaging(0.93) TCGA-CF-A8HY-01 3 184106402 184106402 G A CHRD Missense_Mutation p.G861E 0.20 tolerated(0.24) possibly_damaging(0.736) TCGA-CF-A8HY-01 3 197422778 197422778 G C KIAA0226 Missense_Mutation p.L478V 0.19 deleterious(0) probably_damaging(0.998) TCGA-CF-A8HY-01 3 38805034 38805034 C G SCN10A Missense_Mutation p.R218T 0.22 deleterious(0) probably_damaging(1) TCGA-CF-A8HY-01 3 49061980 49061980 C G IMPDH2 Missense_Mutation p.E491Q 0.31 deleterious(0.02) probably_damaging(0.913) TCGA-CF-A8HY-01 4 103789921 103789921 C T UBE2D3 5'UTR 0.48 TCGA-CF-A8HY-01 4 166986968 166986968 C A TLL1 Missense_Mutation p.S714Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-CF-A8HY-01 4 26483360 26483360 G A CCKAR Missense_Mutation p.A396V 0.19 tolerated(0.45) benign(0) TCGA-CF-A8HY-01 5 131821985 131821985 G C IRF1 Missense_Mutation p.L209V 0.30 tolerated(0.16) benign(0.062) TCGA-CF-A8HY-01 5 140207835 140207835 G A PCDHA6 Silent p.G53G 0.62 TCGA-CF-A8HY-01 5 55168187 55168187 C T IL31RA Missense_Mutation p.T121M 0.14 tolerated(0.07) benign(0.295) TCGA-CF-A8HY-01 5 89947548 89947548 G A GPR98 Splice_Site p.X1139_splice 0.30 TCGA-CF-A8HY-01 6 17648123 17648123 G C NUP153 Missense_Mutation p.S516C 0.24 deleterious(0.01) benign(0.111) TCGA-CF-A8HY-01 6 32138255 32138255 C A AGPAT1 Missense_Mutation p.G153W 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-CF-A8HY-01 6 32138256 32138256 C A AGPAT1 Silent p.T152T 0.26 TCGA-CF-A8HY-01 6 8090438 8090438 T C EEF1E1 Missense_Mutation p.Y122C 0.27 deleterious(0) probably_damaging(0.999) TCGA-CF-A8HY-01 6 90647925 90647925 G - BACH2 Frame_Shift_Del p.Q661Sfs*14 0.37 TCGA-CF-A8HY-01 7 128452153 128452153 C T CCDC136 Silent p.Y776Y 0.25 TCGA-CF-A8HY-01 7 128482915 128482915 C A FLNC Missense_Mutation p.F819L 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-CF-A8HY-01 7 151891317 151891318 - A KMT2C Frame_Shift_Ins p.P1513Sfs*9 0.42 TCGA-CF-A8HY-01 7 4169726 4169726 G A SDK1 Missense_Mutation p.D1376N 0.47 deleterious(0) benign(0.223) TCGA-CF-A8HY-01 8 105025847 105025847 G T RIMS2 Silent p.S1074S 0.39 TCGA-CF-A8HY-01 8 124992879 124992879 C A FER1L6 Missense_Mutation p.S413Y 0.49 tolerated(1) benign(0.076) TCGA-CF-A8HY-01 8 24813400 24813400 C T CTD-2168K21.2 5'Flank 0.29 TCGA-CF-A8HY-01 8 52322045 52322045 C A PXDNL Missense_Mutation p.R713S 0.38 deleterious(0) benign(0.394) TCGA-CF-A8HY-01 8 69728143 69728143 C A C8orf34 Nonsense_Mutation p.C524* 0.45 TCGA-CF-A8HY-01 9 137019628 137019628 G T WDR5 Silent p.P224P 0.86 TCGA-CF-A8HY-01 9 84533076 84533076 G C SPATA31D5P RNA 0.35 TCGA-CF-A8HY-01 X 73961408 73961408 G T KIAA2022 Nonsense_Mutation p.S995* 1.00 TCGA-CF-A8HY-01 X 73963154 73963154 C A KIAA2022 Missense_Mutation p.C413F 0.92 tolerated(0.06) possibly_damaging(0.501) TCGA-CF-A8HY-01 Y 15816251 15816252 - T TMSB4Y Frame_Shift_Ins p.D14Rfs*2 0.46 TCGA-CF-A9FF-01 10 50121548 50121548 C T LRRC18 Missense_Mutation p.R218Q 0.24 deleterious(0.03) benign(0.054) TCGA-CF-A9FF-01 10 5789319 5789319 C G FAM208B Nonsense_Mutation p.S1312* 0.30 TCGA-CF-A9FF-01 10 72434641 72434641 G T ADAMTS14 Nonsense_Mutation p.E138* 0.41 TCGA-CF-A9FF-01 10 8092767 8092767 C G GATA3 5'Flank 0.29 TCGA-CF-A9FF-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.43 TCGA-CF-A9FF-01 11 118526323 118526323 G A PHLDB1 Missense_Mutation p.E1295K 0.06 deleterious(0) probably_damaging(0.999) TCGA-CF-A9FF-01 11 118948933 118948933 G A VPS11 Silent p.L603L 0.03 TCGA-CF-A9FF-01 11 124006841 124006841 C T VWA5A Silent p.L455L 0.39 TCGA-CF-A9FF-01 11 56344620 56344620 C G OR5M10 Missense_Mutation p.R193P 0.37 deleterious(0.01) benign(0.271) TCGA-CF-A9FF-01 12 104208848 104208848 G A NT5DC3 Missense_Mutation p.S87L 0.32 deleterious(0) benign(0.309) TCGA-CF-A9FF-01 12 107937752 107937752 C G BTBD11 Silent p.L442L 0.50 TCGA-CF-A9FF-01 12 110318078 110318078 G A GLTP Silent p.F34F 0.33 TCGA-CF-A9FF-01 12 23999053 23999053 T - SOX5 Frame_Shift_Del p.G116Vfs*24 0.34 TCGA-CF-A9FF-01 12 46243452 46243452 G - ARID2 Frame_Shift_Del p.A603Lfs*44 0.25 TCGA-CF-A9FF-01 12 58019211 58019211 G A SLC26A10 Missense_Mutation p.D498N 0.25 tolerated(0.06) possibly_damaging(0.762) TCGA-CF-A9FF-01 12 7303257 7303257 G A CLSTN3 Missense_Mutation p.R788H 0.06 deleterious(0.03) possibly_damaging(0.74) TCGA-CF-A9FF-01 12 83290148 83290148 C G TMTC2 Missense_Mutation p.I402M 0.31 deleterious(0.03) possibly_damaging(0.615) TCGA-CF-A9FF-01 13 108861580 108861580 C T LIG4 Silent p.E679E 0.34 TCGA-CF-A9FF-01 13 114077230 114077230 G A ADPRHL1 Silent p.L324L 0.33 TCGA-CF-A9FF-01 13 42442563 42442563 T C VWA8 Silent p.V377V 0.40 TCGA-CF-A9FF-01 13 51519637 51519637 C G RNASEH2B Missense_Mutation p.F195L 0.23 tolerated(0.23) benign(0.008) TCGA-CF-A9FF-01 13 77742607 77742607 C G MYCBP2 Missense_Mutation p.E1986Q 0.40 probably_damaging(0.985) TCGA-CF-A9FF-01 13 95121288 95121288 C A DCT Missense_Mutation p.G103C 0.31 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 14 104194185 104194185 G C ZFYVE21 Missense_Mutation p.E98Q 0.40 tolerated(0.1) benign(0.094) TCGA-CF-A9FF-01 14 24535666 24535666 C T LRRC16B Silent p.D1195D 0.31 TCGA-CF-A9FF-01 14 35546420 35546420 C A FAM177A1 Nonsense_Mutation p.S135* 0.33 TCGA-CF-A9FF-01 14 50809712 50809712 C G CDKL1 Intron 0.30 TCGA-CF-A9FF-01 14 77319640 77319640 C T C14orf166B Nonsense_Mutation p.R299* 0.44 TCGA-CF-A9FF-01 14 94060057 94060057 C G UNC79 Missense_Mutation p.Q845E 0.06 deleterious(0.03) probably_damaging(0.985) TCGA-CF-A9FF-01 15 23019854 23019854 G A NIPA2 Nonsense_Mutation p.Q48* 0.34 TCGA-CF-A9FF-01 15 40657451 40657451 G C DISP2 Missense_Mutation p.E275Q 0.26 deleterious(0.01) benign(0.398) TCGA-CF-A9FF-01 15 93588668 93588668 C T RGMA Missense_Mutation p.E313K 0.20 deleterious(0.01) possibly_damaging(0.734) TCGA-CF-A9FF-01 15 93588794 93588794 C A RGMA Nonsense_Mutation p.E271* 0.27 TCGA-CF-A9FF-01 15 93595604 93595604 C T RGMA Silent p.R96R 0.60 TCGA-CF-A9FF-01 16 1552120 1552120 C T TELO2 Silent p.V515V 0.07 TCGA-CF-A9FF-01 16 2487194 2487194 C T CCNF Silent p.L137L 0.08 TCGA-CF-A9FF-01 16 28994238 28994238 C A SPNS1 Missense_Mutation p.L406M 0.41 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 16 31131791 31131791 C T KAT8 Missense_Mutation p.R140C 0.41 deleterious(0) probably_damaging(0.999) TCGA-CF-A9FF-01 16 50745099 50745099 G A NOD2 Missense_Mutation p.R426H 0.15 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 16 54966534 54966534 C T IRX5 Missense_Mutation p.T125M 0.06 deleterious(0) probably_damaging(0.997) TCGA-CF-A9FF-01 16 705107 705107 G C WDR90 Missense_Mutation p.D506H 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-CF-A9FF-01 16 90015856 90015856 G A DEF8 5'UTR 0.25 TCGA-CF-A9FF-01 16 9923342 9923342 G A GRIN2A Silent p.L649L 0.51 TCGA-CF-A9FF-01 17 20108131 20108131 C T SPECC1 Missense_Mutation p.L257F 0.29 tolerated(0.09) benign(0.012) TCGA-CF-A9FF-01 17 2266166 2266166 C A SGSM2 Missense_Mutation p.P165T 0.30 deleterious(0.03) possibly_damaging(0.714) TCGA-CF-A9FF-01 17 3779690 3779690 C A CAMKK1 Missense_Mutation p.D313Y 0.33 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 17 3779703 3779703 C G CAMKK1 Missense_Mutation p.K308N 0.34 tolerated(0.08) probably_damaging(0.913) TCGA-CF-A9FF-01 17 38320417 38320417 G A CASC3 Missense_Mutation p.R490Q 0.35 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-CF-A9FF-01 17 41327878 41327878 C G NBR1 Missense_Mutation p.S21C 0.38 deleterious(0) probably_damaging(0.997) TCGA-CF-A9FF-01 17 44791224 44791224 C T NSF Missense_Mutation p.P545S 0.22 tolerated(0.09) benign(0.359) TCGA-CF-A9FF-01 17 47685289 47685289 G A SPOP Missense_Mutation p.R221C 0.33 deleterious(0.03) probably_damaging(1) TCGA-CF-A9FF-01 17 4858805 4858805 C A ENO3 Nonsense_Mutation p.Y257* 0.05 TCGA-CF-A9FF-01 17 56389782 56389782 G C BZRAP1 Silent p.L800L 0.34 TCGA-CF-A9FF-01 17 61838298 61838298 C T CCDC47 Missense_Mutation p.M237I 0.35 tolerated(0.36) benign(0.147) TCGA-CF-A9FF-01 17 7496403 7496403 C T FXR2 Missense_Mutation p.R476Q 0.50 tolerated(0.16) benign(0.069) TCGA-CF-A9FF-01 17 79164521 79164521 C T AZI1 Missense_Mutation p.E1009K 0.47 deleterious(0.02) possibly_damaging(0.544) TCGA-CF-A9FF-01 17 80210377 80210377 C T CSNK1D Silent p.Q223Q 0.49 TCGA-CF-A9FF-01 17 80210471 80210471 C T CSNK1D Missense_Mutation p.R192Q 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-CF-A9FF-01 17 8738745 8738745 C A PIK3R6 Missense_Mutation p.V164L 0.31 tolerated(1) possibly_damaging(0.527) TCGA-CF-A9FF-01 18 13072797 13072797 C G CEP192 Missense_Mutation p.Q1798E 0.27 deleterious(0) probably_damaging(0.998) TCGA-CF-A9FF-01 18 30950114 30950114 C G CCDC178 Missense_Mutation p.R83P 0.26 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 18 50918166 50918166 A G DCC Missense_Mutation p.D866G 0.10 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 19 41292605 41292605 G A RAB4B Missense_Mutation p.E156K 0.29 deleterious(0.03) probably_damaging(0.926) TCGA-CF-A9FF-01 19 4254471 4254471 G A CCDC94 Silent p.L130L 0.27 TCGA-CF-A9FF-01 19 4457696 4457696 G T UBXN6 5'UTR 0.50 TCGA-CF-A9FF-01 19 49253609 49253609 G A FUT1 Silent p.F310F 0.31 TCGA-CF-A9FF-01 19 50905944 50905944 C T POLD1 Missense_Mutation p.R306C 0.44 deleterious(0) probably_damaging(0.953) TCGA-CF-A9FF-01 19 58370285 58370285 C T ZNF587 Missense_Mutation p.P169S 0.37 tolerated(0.26) benign(0.001) TCGA-CF-A9FF-01 1 152192079 152192079 C T HRNR Missense_Mutation p.G676S 0.41 unknown(0) TCGA-CF-A9FF-01 1 155026830 155026830 G C ADAM15 Missense_Mutation p.E154Q 0.34 tolerated(0.08) probably_damaging(0.967) TCGA-CF-A9FF-01 1 171556229 171556229 C T PRRC2C Nonsense_Mutation p.Q2611* 0.15 TCGA-CF-A9FF-01 1 201437628 201437628 G C PHLDA3 Missense_Mutation p.A96G 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-CF-A9FF-01 1 2103551 2103551 C G PRKCZ Missense_Mutation p.I373M 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-CF-A9FF-01 1 22056206 22056206 G A USP48 Nonsense_Mutation p.Q431* 0.28 TCGA-CF-A9FF-01 1 227173038 227173038 C G ADCK3 Silent p.V552V 0.40 TCGA-CF-A9FF-01 1 228495952 228495952 G A OBSCN Missense_Mutation p.E5160K 0.37 probably_damaging(0.972) TCGA-CF-A9FF-01 1 24413161 24413161 C T MYOM3 Missense_Mutation p.E591K 0.09 tolerated(0.15) benign(0.012) TCGA-CF-A9FF-01 1 46088753 46088753 C T CCDC17 Missense_Mutation p.R177Q 0.35 tolerated(0.12) benign(0.071) TCGA-CF-A9FF-01 1 55118794 55118794 G C MROH7 Missense_Mutation p.L65F 0.26 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-CF-A9FF-01 1 67293551 67293551 G C WDR78 Missense_Mutation p.H686D 0.09 deleterious(0) probably_damaging(0.996) TCGA-CF-A9FF-01 1 89323155 89323155 G T GTF2B Nonsense_Mutation p.S184* 0.39 TCGA-CF-A9FF-01 20 21492988 21492988 C G NKX2-2 Missense_Mutation p.R132P 0.22 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 20 31647768 31647768 C G BPIFB3 Nonsense_Mutation p.S153* 0.40 TCGA-CF-A9FF-01 20 33637720 33637720 C T TRPC4AP Silent p.K202K 0.34 TCGA-CF-A9FF-01 20 34459715 34459715 C T PHF20 Missense_Mutation p.P416S 0.31 tolerated(0.38) benign(0.001) TCGA-CF-A9FF-01 20 62187952 62187952 C T C20orf195 Silent p.P312P 0.37 TCGA-CF-A9FF-01 20 62324557 62324557 G C RTEL1 Silent p.L995L 0.46 TCGA-CF-A9FF-01 21 33976579 33976579 G A AP000275.65 Silent p.A130A 0.07 TCGA-CF-A9FF-01 21 47817295 47817295 G A PCNT Missense_Mutation p.E1445K 0.44 possibly_damaging(0.636) TCGA-CF-A9FF-01 22 21156327 21156327 G A PI4KA Missense_Mutation p.S553L 0.23 tolerated(0.3) benign(0.03) TCGA-CF-A9FF-01 22 26997881 26997881 G A CRYBB1 Silent p.F179F 0.28 TCGA-CF-A9FF-01 22 31608339 31608339 G T LIMK2 5'UTR 0.42 TCGA-CF-A9FF-01 2 109300484 109300484 G C LIMS1 3'UTR 0.21 TCGA-CF-A9FF-01 2 113676221 113676221 G A IL37 Nonsense_Mutation p.W164* 0.28 TCGA-CF-A9FF-01 2 113676300 113676300 G T IL37 Missense_Mutation p.D191Y 0.33 deleterious(0.01) possibly_damaging(0.879) TCGA-CF-A9FF-01 2 113676357 113676357 G A IL37 Missense_Mutation p.E210K 0.25 tolerated(0.19) benign(0.122) TCGA-CF-A9FF-01 2 163075645 163075645 G A FAP Missense_Mutation p.P179S 0.41 tolerated(0.28) benign(0.069) TCGA-CF-A9FF-01 2 170019075 170019075 C T LRP2 Missense_Mutation p.E3932K 0.51 probably_damaging(0.991) TCGA-CF-A9FF-01 2 186672259 186672259 G A FSIP2 Missense_Mutation p.D6165N 0.25 benign(0.001) TCGA-CF-A9FF-01 2 189873943 189873943 G A COL3A1 Silent p.K1273K 0.41 TCGA-CF-A9FF-01 2 191301091 191301091 C T MFSD6 Silent p.F112F 0.05 TCGA-CF-A9FF-01 2 21230763 21230763 C G APOB Missense_Mutation p.D2993H 0.33 benign(0.393) TCGA-CF-A9FF-01 2 222298867 222298867 G A EPHA4 Nonsense_Mutation p.Q831* 0.23 TCGA-CF-A9FF-01 2 226447597 226447597 C T NYAP2 Silent p.V488V 0.25 TCGA-CF-A9FF-01 2 227895264 227895264 C T COL4A4 Missense_Mutation p.E1290K 0.12 unknown(0) TCGA-CF-A9FF-01 2 230724018 230724018 G C TRIP12 Missense_Mutation p.S124C 0.25 deleterious_low_confidence(0.03) benign(0.417) TCGA-CF-A9FF-01 2 233748753 233748753 G C NGEF Silent p.L513L 0.16 TCGA-CF-A9FF-01 2 241808420 241808420 C A AGXT Silent p.I46I 0.26 TCGA-CF-A9FF-01 2 25978935 25978935 C T ASXL2 Missense_Mutation p.E330K 0.42 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 2 39552953 39552953 C T MAP4K3 Splice_Site p.X242_splice 0.23 TCGA-CF-A9FF-01 3 101578176 101578176 G A NFKBIZ Silent p.L706L 0.18 TCGA-CF-A9FF-01 3 122645406 122645406 C G SEMA5B Missense_Mutation p.K377N 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-CF-A9FF-01 3 12475550 12475550 C T PPARG Missense_Mutation p.T475M 0.29 deleterious(0) probably_damaging(1) TCGA-CF-A9FF-01 3 132235271 132235271 C T DNAJC13 Nonsense_Mutation p.Q1831* 0.26 TCGA-CF-A9FF-01 3 148614342 148614342 G A CPA3 Missense_Mutation p.D368N 0.42 tolerated(0.24) benign(0.005) TCGA-CF-A9FF-01 3 152058269 152058269 G C TMEM14E 3'UTR 0.07 TCGA-CF-A9FF-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.34 tolerated(0.11) possibly_damaging(0.529) TCGA-CF-A9FF-01 3 37368554 37368554 C T GOLGA4 Missense_Mutation p.S1748F 0.05 possibly_damaging(0.459) TCGA-CF-A9FF-01 3 38347691 38347691 G C SLC22A14 Silent p.A58A 0.39 TCGA-CF-A9FF-01 3 47852163 47852163 C T DHX30 5'UTR 0.27 TCGA-CF-A9FF-01 3 48457566 48457566 A T PLXNB1 Missense_Mutation p.V1164D 0.27 deleterious(0) probably_damaging(0.998) TCGA-CF-A9FF-01 3 49059677 49059677 C G NDUFAF3 Intron 0.30 TCGA-CF-A9FF-01 3 49135810 49135810 C T QARS Missense_Mutation p.C687Y 0.37 deleterious(0) probably_damaging(0.987) TCGA-CF-A9FF-01 3 52523380 52523380 G A NISCH Missense_Mutation p.A1048T 0.30 tolerated(0.43) benign(0.023) TCGA-CF-A9FF-01 3 65361561 65361561 C T MAGI1 Missense_Mutation p.D1019N 0.06 deleterious(0) probably_damaging(0.999) TCGA-CF-A9FF-01 3 67546263 67546263 G C SUCLG2 Missense_Mutation p.Q341E 0.05 deleterious(0.02) possibly_damaging(0.897) TCGA-CF-A9FF-01 4 109669170 109669170 C T ETNPPL Missense_Mutation p.G358E 0.06 deleterious(0) probably_damaging(0.996) TCGA-CF-A9FF-01 4 126398323 126398323 C T FAT4 Nonsense_Mutation p.Q4103* 0.33 TCGA-CF-A9FF-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.47 deleterious(0.01) possibly_damaging(0.594) TCGA-CF-A9FF-01 4 23833308 23833308 C T PPARGC1A Missense_Mutation p.V101M 0.03 tolerated(0.06) probably_damaging(0.99) TCGA-CF-A9FF-01 4 55948763 55948763 C G KDR Silent p.V1234V 0.26 TCGA-CF-A9FF-01 4 66286280 66286280 G T EPHA5 Missense_Mutation p.P469Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-CF-A9FF-01 4 66286281 66286281 G T EPHA5 Missense_Mutation p.P469T 0.13 deleterious(0) probably_damaging(0.991) TCGA-CF-A9FF-01 5 112174588 112174588 T G APC Silent p.V1099V 0.27 TCGA-CF-A9FF-01 5 134076756 134076759 AAGA - CAMLG Frame_Shift_Del p.E60Vfs*13 0.33 TCGA-CF-A9FF-01 5 140222551 140222551 G A PCDHA8 Missense_Mutation p.V549M 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-CF-A9FF-01 5 145651076 145651076 C T RBM27 Nonsense_Mutation p.R943* 0.37 TCGA-CF-A9FF-01 5 147928298 147928298 G C HTR4 Missense_Mutation p.R96G 0.24 tolerated(0.33) probably_damaging(0.962) TCGA-CF-A9FF-01 5 175816396 175816396 G A HIGD2A Silent p.Q73Q 0.04 TCGA-CF-A9FF-01 5 38481878 38481878 T G LIFR Missense_Mutation p.N1038T 0.07 tolerated(0.26) benign(0.011) TCGA-CF-A9FF-01 5 54529236 54529236 C T CCNO Missense_Mutation p.R39K 0.41 tolerated_low_confidence(0.15) possibly_damaging(0.867) TCGA-CF-A9FF-01 5 66448516 66448516 C G MAST4 Missense_Mutation p.S1116C 0.04 probably_damaging(1) TCGA-CF-A9FF-01 5 86708704 86708704 C G CCNH 5'UTR 0.32 TCGA-CF-A9FF-01 6 119297190 119297190 G C FAM184A Silent p.L825L 0.39 TCGA-CF-A9FF-01 6 131917800 131917800 G A MED23 Missense_Mutation p.A879V 0.08 tolerated(0.15) probably_damaging(0.996) TCGA-CF-A9FF-01 6 13206063 13206063 G A PHACTR1 Silent p.V227V 0.31 TCGA-CF-A9FF-01 6 26217236 26217236 C A HIST1H2AE Silent p.R12R 0.30 TCGA-CF-A9FF-01 6 31548477 31548477 C T LTB 3'UTR 0.28 TCGA-CF-A9FF-01 6 31598376 31598376 C T PRRC2A Missense_Mutation p.P755S 0.29 possibly_damaging(0.641) TCGA-CF-A9FF-01 6 35426205 35426205 C G FANCE Silent p.L367L 0.36 TCGA-CF-A9FF-01 6 36651906 36651906 C T CDKN1A Nonsense_Mutation p.Q10* 0.20 TCGA-CF-A9FF-01 6 36652053 36652068 CTGGAGGGTGACTTCG - CDKN1A Frame_Shift_Del p.L59Pfs*84 0.24 TCGA-CF-A9FF-01 6 42641590 42641590 C T UBR2 Missense_Mutation p.S1383L 0.33 tolerated(0.29) benign(0) TCGA-CF-A9FF-01 6 44223148 44223148 C T SLC35B2 Nonsense_Mutation p.W198* 0.40 TCGA-CF-A9FF-01 6 55216139 55216139 A C GFRAL Missense_Mutation p.K153N 0.29 deleterious(0) probably_damaging(0.988) TCGA-CF-A9FF-01 6 56765247 56765247 G C DST Missense_Mutation p.S130C 0.30 deleterious_low_confidence(0) benign(0.24) TCGA-CF-A9FF-01 6 7229536 7229536 C T RREB1 Nonsense_Mutation p.Q402* 0.32 TCGA-CF-A9FF-01 6 79607666 79607666 G A IRAK1BP1 Missense_Mutation p.E168K 0.28 deleterious(0.02) probably_damaging(0.917) TCGA-CF-A9FF-01 6 83841922 83841922 T C DOPEY1 Silent p.L882L 0.34 TCGA-CF-A9FF-01 7 100468338 100468338 G A TRIP6 Silent p.R324R 0.28 TCGA-CF-A9FF-01 7 133059751 133059751 C G EXOC4 Missense_Mutation p.L393V 0.34 tolerated(0.14) possibly_damaging(0.471) TCGA-CF-A9FF-01 7 135304280 135304280 C T NUP205 Missense_Mutation p.S1358L 0.26 tolerated(0.4) benign(0.002) TCGA-CF-A9FF-01 7 150935045 150935045 G A CHPF2 Missense_Mutation p.E533K 0.28 deleterious(0.03) benign(0.324) TCGA-CF-A9FF-01 7 21603978 21603978 T G DNAH11 Missense_Mutation p.V386G 0.26 possibly_damaging(0.543) TCGA-CF-A9FF-01 7 27219318 27219318 G A RP1-170O19.20 5'UTR 0.62 TCGA-CF-A9FF-01 7 37298882 37298882 T C ELMO1 Missense_Mutation p.D106G 0.26 tolerated(0.07) benign(0.146) TCGA-CF-A9FF-01 7 64438495 64438495 G A ZNF117 3'UTR 0.21 TCGA-CF-A9FF-01 7 66418223 66418223 C T TMEM248 Missense_Mutation p.S264L 0.30 deleterious(0) possibly_damaging(0.711) TCGA-CF-A9FF-01 7 72987257 72987257 G A TBL2 Silent p.I214I 0.14 TCGA-CF-A9FF-01 7 75182856 75182856 C T HIP1 Missense_Mutation p.E731K 0.23 tolerated(0.13) benign(0.013) TCGA-CF-A9FF-01 8 22275164 22275164 G A SLC39A14 Missense_Mutation p.G383E 0.29 deleterious(0.02) probably_damaging(1) TCGA-CF-A9FF-01 8 72754893 72754893 G A MSC 3'UTR 0.22 TCGA-CF-A9FF-01 8 8999029 8999029 C T PPP1R3B Missense_Mutation p.E45K 0.32 tolerated(0.15) benign(0.007) TCGA-CF-A9FF-01 9 100849701 100849701 G A TRIM14 3'UTR 0.50 TCGA-CF-A9FF-01 9 125621070 125621070 C G RC3H2 Missense_Mutation p.D721H 0.37 tolerated(0.06) probably_damaging(0.996) TCGA-CF-A9FF-01 9 131339475 131339475 C T SPTAN1 Nonsense_Mutation p.R285* 0.55 TCGA-CF-A9FF-01 9 135787750 135787751 AC - TSC1 Frame_Shift_Del p.H279Pfs*20 0.34 TCGA-CF-A9FF-01 9 27284656 27284656 G C EQTN 3'Flank 0.47 TCGA-CF-A9FF-01 9 69420336 69420336 C T ANKRD20A4 Missense_Mutation p.S409F 0.31 deleterious(0.03) benign(0.03) TCGA-CF-A9FF-01 9 80020847 80020847 G A VPS13A Missense_Mutation p.E3115K 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A9FF-01 X 100364525 100364525 C G CENPI Missense_Mutation p.S143C 0.03 deleterious(0.04) possibly_damaging(0.625) TCGA-CF-A9FF-01 X 100486611 100486611 C A DRP2 5'UTR 0.05 TCGA-CF-A9FF-01 X 101972178 101972178 G C GPRASP2 Missense_Mutation p.G794A 0.06 tolerated(0.2) possibly_damaging(0.626) TCGA-CF-A9FF-01 X 101972243 101972243 G C GPRASP2 Missense_Mutation p.E816Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A9FF-01 X 106186426 106186426 T C MORC4 Silent p.K565K 0.74 TCGA-CF-A9FF-01 X 117578406 117578406 G A WDR44 Missense_Mutation p.E866K 0.13 tolerated(0.11) benign(0.027) TCGA-CF-A9FF-01 X 17763599 17763599 C A SCML1 Nonsense_Mutation p.Y19* 0.53 TCGA-CF-A9FF-01 X 83361948 83361948 G A RPS6KA6 Silent p.I404I 0.56 TCGA-CF-A9FF-01 X 96167542 96167542 G A DIAPH2 Missense_Mutation p.M241I 0.62 deleterious(0) unknown(0) TCGA-CF-A9FF-01 Y 14848137 14848137 G A USP9Y Missense_Mutation p.E327K 0.86 deleterious(0.04) benign(0.089) TCGA-CF-A9FH-01 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-CF-A9FH-01 11 55111035 55111035 G A OR4A16 Missense_Mutation p.R120H 0.45 deleterious_low_confidence(0.04) benign(0.082) TCGA-CF-A9FH-01 11 65272149 65272149 A G MALAT1 RNA 0.39 TCGA-CF-A9FH-01 11 6816775 6816775 G T OR6A2 Silent p.T55T 0.88 TCGA-CF-A9FH-01 11 77817889 77817889 T A ALG8 Missense_Mutation p.H381L 0.47 deleterious(0) probably_damaging(1) TCGA-CF-A9FH-01 11 89774638 89774638 C A TRIM49C Missense_Mutation p.Q427K 0.32 tolerated(0.81) benign(0.029) TCGA-CF-A9FH-01 12 111758432 111758432 G A CUX2 Silent p.P873P 0.43 TCGA-CF-A9FH-01 12 48134127 48134127 G A RAPGEF3 Silent p.L761L 0.48 TCGA-CF-A9FH-01 12 6682432 6682432 A C CHD4 Missense_Mutation p.L1789V 0.43 deleterious(0) probably_damaging(0.987) TCGA-CF-A9FH-01 13 29599473 29599473 G A MTUS2 Missense_Mutation p.G223E 0.41 tolerated(0.33) benign(0.016) TCGA-CF-A9FH-01 13 97999160 97999160 G A MBNL2 Missense_Mutation p.V215I 0.05 deleterious(0.02) probably_damaging(0.959) TCGA-CF-A9FH-01 15 34640668 34640668 T G NUTM1 Missense_Mutation p.I172S 0.17 tolerated(0.08) benign(0.145) TCGA-CF-A9FH-01 15 75941472 75941472 A G SNX33 Missense_Mutation p.D10G 0.28 deleterious(0.01) benign(0.396) TCGA-CF-A9FH-01 16 77359804 77359804 C T ADAMTS18 Missense_Mutation p.R664H 0.34 deleterious(0) probably_damaging(0.994) TCGA-CF-A9FH-01 17 37627328 37627328 A G CDK12 Missense_Mutation p.M415V 0.30 benign(0.003) TCGA-CF-A9FH-01 17 76454652 76454652 C T DNAH17 Silent p.A3310A 0.65 TCGA-CF-A9FH-01 19 12911823 12911823 A C PRDX2 Missense_Mutation p.I55S 0.43 deleterious(0) probably_damaging(0.982) TCGA-CF-A9FH-01 19 14752323 14752323 T G EMR3 Missense_Mutation p.N386H 0.34 deleterious(0) probably_damaging(0.992) TCGA-CF-A9FH-01 19 50214098 50214098 A G CPT1C Missense_Mutation p.E617G 0.06 tolerated(0.33) possibly_damaging(0.676) TCGA-CF-A9FH-01 19 54848763 54848763 C A LILRA4 Missense_Mutation p.R287L 0.50 tolerated(0.53) benign(0.025) TCGA-CF-A9FH-01 1 149859131 149859132 - AA HIST2H2AB Frame_Shift_Ins p.Q113Sfs*21 0.33 TCGA-CF-A9FH-01 1 200017524 200017524 T A NR5A2 Missense_Mutation p.L230M 0.44 tolerated(0.25) benign(0.065) TCGA-CF-A9FH-01 1 20966426 20966426 G T PINK1 Missense_Mutation p.Q239H 0.31 tolerated(0.07) benign(0.053) TCGA-CF-A9FH-01 1 237881783 237881783 C T RYR2 Nonsense_Mutation p.R3506* 0.30 TCGA-CF-A9FH-01 1 7811340 7811340 C T CAMTA1 Nonsense_Mutation p.Q1591* 0.50 TCGA-CF-A9FH-01 22 39626091 39626091 C T PDGFB Missense_Mutation p.R200Q 0.23 tolerated(0.06) benign(0.025) TCGA-CF-A9FH-01 2 209150576 209150576 A C PIKFYVE Missense_Mutation p.D247A 0.45 deleterious(0.02) benign(0.297) TCGA-CF-A9FH-01 2 61147763 61147763 G C REL Missense_Mutation p.R358T 0.50 deleterious(0) possibly_damaging(0.776) TCGA-CF-A9FH-01 2 62227971 62227971 C T COMMD1 Missense_Mutation p.R106C 0.45 deleterious(0) probably_damaging(0.912) TCGA-CF-A9FH-01 3 141499493 141499493 C T GRK7 Missense_Mutation p.S297L 0.06 deleterious(0) benign(0.311) TCGA-CF-A9FH-01 3 184001624 184001624 G T ECE2 Missense_Mutation p.G408W 0.09 deleterious(0) possibly_damaging(0.521) TCGA-CF-A9FH-01 3 9757192 9757192 A G CPNE9 Silent p.K268K 0.55 TCGA-CF-A9FH-01 4 1806092 1806092 A T FGFR3 Missense_Mutation p.S373C 0.95 deleterious(0.03) probably_damaging(0.919) TCGA-CF-A9FH-01 5 136964097 136964097 C T KLHL3 Missense_Mutation p.A494T 0.45 deleterious(0.01) possibly_damaging(0.737) TCGA-CF-A9FH-01 5 137802545 137802545 G T EGR1 Missense_Mutation p.R136L 0.06 deleterious(0) possibly_damaging(0.569) TCGA-CF-A9FH-01 5 38950622 38950622 G A RICTOR Missense_Mutation p.R1110C 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-CF-A9FH-01 6 2749603 2749603 G - MYLK4 5'UTR 0.32 TCGA-CF-A9FH-01 6 55929397 55929397 T C COL21A1 Silent p.R717R 0.47 TCGA-CF-A9FH-01 6 84233339 84233339 C T PRSS35 Missense_Mutation p.T60I 0.47 tolerated(0.12) benign(0.045) TCGA-CF-A9FH-01 7 50450301 50450301 G A IKZF1 Missense_Mutation p.R162Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-CF-A9FH-01 8 68942838 68942838 A T PREX2 Missense_Mutation p.Q217L 0.43 deleterious(0.01) probably_damaging(0.953) TCGA-CF-A9FH-01 8 72973867 72973867 G A TRPA1 Missense_Mutation p.L313F 0.48 deleterious(0) probably_damaging(0.994) TCGA-CF-A9FH-01 9 131339534 131339535 - G SPTAN1 Frame_Shift_Ins p.A305Gfs*13 0.50 TCGA-CF-A9FH-01 9 135772832 135772832 C A TSC1 Nonsense_Mutation p.E931* 0.94 TCGA-CF-A9FH-01 X 91134045 91134045 G T PCDH11X Missense_Mutation p.A936S 0.85 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 10 103298108 103298109 CT - BTRC Frame_Shift_Del p.C547Sfs*17 0.30 TCGA-CF-A9FL-01 10 121567541 121567541 G T INPP5F Missense_Mutation p.S513I 0.32 deleterious(0.01) benign(0.124) TCGA-CF-A9FL-01 10 25312642 25312642 C T THNSL1 Missense_Mutation p.R164C 0.41 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 10 98240130 98240130 C A TLL2 Missense_Mutation p.V88L 0.42 tolerated_low_confidence(0.68) benign(0.001) TCGA-CF-A9FL-01 11 125831779 125831779 C T CDON Silent p.V1157V 0.34 TCGA-CF-A9FL-01 11 65267867 65267867 C T MALAT1 RNA 0.31 TCGA-CF-A9FL-01 12 123345049 123345049 G A HIP1R Missense_Mutation p.G880D 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-CF-A9FL-01 12 29509323 29509324 TG A ERGIC2 Frame_Shift_Del p.T188Mfs*30 0.30 TCGA-CF-A9FL-01 12 49437650 49437650 C T KMT2D Splice_Site p.X1773_splice 0.38 TCGA-CF-A9FL-01 12 49440047 49440047 C A KMT2D Nonsense_Mutation p.E1527* 0.37 TCGA-CF-A9FL-01 13 36700195 36700195 A C DCLK1 Missense_Mutation p.V27G 0.33 tolerated_low_confidence(0.99) unknown(0) TCGA-CF-A9FL-01 14 45432146 45432146 G A FAM179B Silent p.E174E 0.36 TCGA-CF-A9FL-01 14 79175615 79175615 C T NRXN3 Missense_Mutation p.A53V 0.45 tolerated(0.14) possibly_damaging(0.748) TCGA-CF-A9FL-01 15 35274551 35274551 T G ZNF770 Missense_Mutation p.K362T 0.36 deleterious(0) possibly_damaging(0.798) TCGA-CF-A9FL-01 15 65621420 65621420 C T IGDCC3 Missense_Mutation p.G758S 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-CF-A9FL-01 15 91020003 91020004 AA - IQGAP1 Frame_Shift_Del p.K965Efs*62 0.29 TCGA-CF-A9FL-01 16 29872617 29872617 G T CDIPT Intron 0.44 TCGA-CF-A9FL-01 16 3828757 3828778 GGTTTTCCATGCGGCGATCCTT - CREBBP Frame_Shift_Del p.K622Wfs*2 0.31 TCGA-CF-A9FL-01 16 47117214 47117214 C T NETO2 Missense_Mutation p.R499Q 0.34 tolerated_low_confidence(0.08) benign(0.072) TCGA-CF-A9FL-01 16 71318890 71318890 C T CMTR2 Missense_Mutation p.E312K 0.33 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 16 71319087 71319104 TCACCTGGGTTTCCTTGG - CMTR2 Nonsense_Mutation p.C240_E246delins* 0.23 TCGA-CF-A9FL-01 17 27425437 27425437 C T MYO18A Silent p.K1269K 0.30 TCGA-CF-A9FL-01 17 79095877 79095877 G A AATK Missense_Mutation p.A620V 0.25 tolerated(0.2) benign(0.027) TCGA-CF-A9FL-01 17 8052950 8052950 G A PER1 Missense_Mutation p.T228M 0.08 deleterious(0) probably_damaging(0.985) TCGA-CF-A9FL-01 18 21044061 21044061 A G RIOK3 Missense_Mutation p.N104D 0.38 deleterious(0.01) probably_damaging(0.927) TCGA-CF-A9FL-01 19 10473002 10473002 C A TYK2 Missense_Mutation p.C536F 0.24 tolerated(0.43) benign(0.047) TCGA-CF-A9FL-01 19 33792337 33792337 C T CEBPA Silent p.V328V 0.39 TCGA-CF-A9FL-01 19 41120272 41120272 G A LTBP4 Missense_Mutation p.C978Y 0.36 deleterious(0) probably_damaging(0.976) TCGA-CF-A9FL-01 19 42383354 42383375 TGCGCCGTGAGTGGCCCAGCCC - CD79A Splice_Site p.X126_splice 0.33 TCGA-CF-A9FL-01 19 44002018 44002018 C T PHLDB3 Missense_Mutation p.R182Q 0.38 tolerated(0.37) benign(0.031) TCGA-CF-A9FL-01 1 12082367 12082367 A T MIIP Missense_Mutation p.R110S 0.40 deleterious(0.04) probably_damaging(0.948) TCGA-CF-A9FL-01 1 144828607 144828613 TTCTACT - NBPF9 Frame_Shift_Del p.S626Rfs*39 0.25 TCGA-CF-A9FL-01 1 155217728 155217728 C A FAM189B Missense_Mutation p.G618C 0.35 deleterious(0) possibly_damaging(0.681) TCGA-CF-A9FL-01 1 161138879 161138879 A C PPOX Missense_Mutation p.Q238P 0.26 deleterious(0.01) possibly_damaging(0.774) TCGA-CF-A9FL-01 1 186043957 186043957 C T HMCN1 Nonsense_Mutation p.R2742* 0.43 TCGA-CF-A9FL-01 1 193150465 193150467 GTG - B3GALT2 In_Frame_Del p.H76del 0.64 TCGA-CF-A9FL-01 1 201984390 201984390 A G ELF3 Missense_Mutation p.Y352C 0.62 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 1 211486089 211486104 AAGCTATTGCAGATGT - RCOR3 Frame_Shift_Del p.A369Lfs*9 0.25 TCGA-CF-A9FL-01 1 237619919 237619919 T C RYR2 Missense_Mutation p.L499P 0.27 possibly_damaging(0.554) TCGA-CF-A9FL-01 20 31682938 31682938 A T BPIFB4 Silent p.T459T 0.05 TCGA-CF-A9FL-01 20 37378814 37378814 G T ACTR5 Silent p.S179S 0.39 TCGA-CF-A9FL-01 21 43905780 43905780 T - RSPH1 Frame_Shift_Del p.N167Ifs*22 0.20 TCGA-CF-A9FL-01 21 47852001 47852001 T A PCNT Missense_Mutation p.L2875I 0.06 possibly_damaging(0.636) TCGA-CF-A9FL-01 22 24323194 24323194 G T GSTT2 Silent p.T56T 0.13 TCGA-CF-A9FL-01 2 179426877 179426877 C A TTN Silent p.V27994V 0.44 TCGA-CF-A9FL-01 2 29368223 29368223 C T CLIP4 Silent p.A337A 0.39 TCGA-CF-A9FL-01 2 56145174 56145174 C A EFEMP1 Missense_Mutation p.C48F 0.43 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 2 88474290 88474290 G T THNSL2 Missense_Mutation p.C119F 0.45 tolerated(0.12) benign(0.326) TCGA-CF-A9FL-01 2 9582014 9582014 G C CPSF3 Missense_Mutation p.G335A 0.26 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 3 111637979 111637979 C T PHLDB2 Missense_Mutation p.R594W 0.34 deleterious(0) possibly_damaging(0.588) TCGA-CF-A9FL-01 3 132181319 132181319 C A DNAJC13 Silent p.S574S 0.42 TCGA-CF-A9FL-01 3 39226128 39226128 G A XIRP1 Silent p.V1603V 0.38 TCGA-CF-A9FL-01 3 50314099 50314099 C T LSMEM2 5'Flank 0.58 TCGA-CF-A9FL-01 3 58395317 58395318 - A PXK Frame_Shift_Ins p.R459Kfs*15 0.33 TCGA-CF-A9FL-01 4 101953424 101953424 C G PPP3CA Missense_Mutation p.A447P 0.43 deleterious(0.02) possibly_damaging(0.863) TCGA-CF-A9FL-01 4 48158749 48158749 C T TEC Nonsense_Mutation p.W247* 0.41 TCGA-CF-A9FL-01 5 102364618 102364618 G A PAM Missense_Mutation p.G925D 0.40 deleterious(0) probably_damaging(0.998) TCGA-CF-A9FL-01 5 153026645 153026645 C T GRIA1 Silent p.R136R 0.38 TCGA-CF-A9FL-01 5 179048027 179048027 G A HNRNPH1 Missense_Mutation p.S88L 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-CF-A9FL-01 6 107390668 107390668 C T BEND3 Missense_Mutation p.R576H 0.30 deleterious(0) probably_damaging(1) TCGA-CF-A9FL-01 6 29794805 29794805 A G HLA-G 5'UTR 0.69 TCGA-CF-A9FL-01 6 33286835 33286835 G A DAXX Missense_Mutation p.P701L 0.37 deleterious(0) probably_damaging(0.995) TCGA-CF-A9FL-01 6 88299869 88299869 C A ORC3 5'UTR 0.32 TCGA-CF-A9FL-01 6 96651577 96651577 G A FUT9 Silent p.V182V 0.46 TCGA-CF-A9FL-01 7 113519937 113519937 G T PPP1R3A Missense_Mutation p.P404T 0.44 tolerated(0.34) benign(0.196) TCGA-CF-A9FL-01 7 130067796 130067796 C T CEP41 Missense_Mutation p.G33S 0.21 deleterious(0) probably_damaging(0.969) TCGA-CF-A9FL-01 7 151835931 151835932 CT - KMT2C Frame_Shift_Del p.G4865Tfs*20 0.28 TCGA-CF-A9FL-01 7 53103647 53103647 G C POM121L12 Missense_Mutation p.E95Q 0.45 deleterious(0.01) probably_damaging(0.919) TCGA-CF-A9FL-01 8 24771324 24771324 C A NEFM Missense_Mutation p.D6E 0.33 tolerated(0.51) unknown(0) TCGA-CF-A9FL-01 8 28574319 28574319 C T EXTL3 Missense_Mutation p.P248L 0.40 tolerated(0.24) benign(0.007) TCGA-CF-A9FL-01 8 32599593 32599593 A C NRG1 Intron 0.12 TCGA-CF-A9FL-01 8 54141918 54141918 C T OPRK1 Missense_Mutation p.R361Q 0.43 tolerated(0.06) benign(0.003) TCGA-CF-A9FL-01 8 69005874 69005874 A G PREX2 Missense_Mutation p.E762G 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-CF-A9FL-01 8 75227740 75227740 C T JPH1 Silent p.S165S 0.68 TCGA-CF-A9FL-01 9 117797570 117797570 C T TNC Silent p.S1900S 0.69 TCGA-CF-A9FL-01 9 72659016 72659016 G A MAMDC2 5'UTR 0.78 TCGA-CF-A9FL-01 X 56291623 56291623 C T KLF8 Missense_Mutation p.S31F 0.85 deleterious_low_confidence(0) benign(0.326) TCGA-CF-A9FL-01 X 76939543 76939543 A G ATRX Missense_Mutation p.I402T 0.83 benign(0.342) TCGA-CF-A9FM-01 11 111591410 111591410 G A SIK2 Silent p.Q568Q 0.35 TCGA-CF-A9FM-01 11 21594801 21594801 G A NELL1 Missense_Mutation p.G743E 0.38 deleterious(0.02) possibly_damaging(0.824) TCGA-CF-A9FM-01 12 133218864 133218864 C T POLE Missense_Mutation p.R1691H 0.40 deleterious(0.01) probably_damaging(0.982) TCGA-CF-A9FM-01 13 53624143 53624143 C A OLFM4 Missense_Mutation p.P257Q 0.45 deleterious(0) probably_damaging(1) TCGA-CF-A9FM-01 14 105609073 105609073 C A JAG2 Missense_Mutation p.V1226F 0.14 deleterious(0.01) benign(0.393) TCGA-CF-A9FM-01 14 50249092 50249092 T G KLHDC2 Missense_Mutation p.W321G 0.34 deleterious(0) benign(0.389) TCGA-CF-A9FM-01 14 67848360 67848360 G C EIF2S1 Missense_Mutation p.A211P 0.41 deleterious(0) probably_damaging(0.995) TCGA-CF-A9FM-01 15 69732743 69732743 A G KIF23 Missense_Mutation p.K662E 0.59 tolerated(0.11) benign(0.271) TCGA-CF-A9FM-01 15 78783054 78783054 G - IREB2 Frame_Shift_Del p.G759Efs*13 0.32 TCGA-CF-A9FM-01 16 4933452 4933452 T C PPL Missense_Mutation p.Y1735C 0.37 deleterious(0) probably_damaging(0.998) TCGA-CF-A9FM-01 17 18333127 18333127 G T KRT17P2 RNA 0.39 TCGA-CF-A9FM-01 17 20405863 20405863 G A RP11-434D2.7 3'Flank 0.22 TCGA-CF-A9FM-01 17 38172871 38172871 C T CSF3 Missense_Mutation p.T149I 0.47 deleterious(0.02) possibly_damaging(0.842) TCGA-CF-A9FM-01 17 76475640 76475640 C T DNAH17 Silent p.T2595T 0.45 TCGA-CF-A9FM-01 19 54238195 54238195 C T MIR518D RNA 0.46 TCGA-CF-A9FM-01 1 117695792 117695792 G A VTCN1 Silent p.Y215Y 0.46 TCGA-CF-A9FM-01 20 35444501 35444501 C T SOGA1 Silent p.V448V 0.39 TCGA-CF-A9FM-01 22 21975915 21975915 A G UBE2L3 Missense_Mutation p.E199G 0.28 deleterious(0) probably_damaging(0.984) TCGA-CF-A9FM-01 2 21260839 21260840 - A APOB Frame_Shift_Ins p.L177Vfs*30 0.30 TCGA-CF-A9FM-01 2 234622156 234622158 GAG - UGT1A5 In_Frame_Del p.R174del 0.41 TCGA-CF-A9FM-01 3 36872529 36872529 T C TRANK1 Missense_Mutation p.I2805V 0.43 tolerated(0.12) benign(0.01) TCGA-CF-A9FM-01 4 141590905 141590905 G A TBC1D9 Silent p.S440S 0.38 TCGA-CF-A9FM-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.48 deleterious(0.01) possibly_damaging(0.594) TCGA-CF-A9FM-01 5 154174850 154174850 C G LARP1 Missense_Mutation p.L373V 0.27 deleterious(0.01) possibly_damaging(0.672) TCGA-CF-A9FM-01 5 176887532 176887532 G T DBN1 Silent p.R288R 0.44 TCGA-CF-A9FM-01 6 116950757 116950758 - A RSPH4A Frame_Shift_Ins p.N566Kfs*2 0.42 TCGA-CF-A9FM-01 6 43019173 43019173 G A CUL7 Missense_Mutation p.R340W 0.30 deleterious(0) probably_damaging(0.95) TCGA-CF-A9FM-01 7 138239673 138239673 A G TRIM24 Missense_Mutation p.M498V 0.49 tolerated(0.51) benign(0.001) TCGA-CF-A9FM-01 7 44797153 44797153 A G ZMIZ2 Missense_Mutation p.Y182C 0.47 deleterious(0) possibly_damaging(0.75) TCGA-CF-A9FM-01 9 135975457 135975457 G A RALGDS Intron 0.82 TCGA-CF-A9FM-01 9 136384092 136384092 G A TMEM8C Silent p.V101V 0.38 TCGA-CU-A0YN-01 10 135203207 135203207 G A PAOX Missense_Mutation p.D450N 0.23 deleterious(0) probably_damaging(0.992) TCGA-CU-A0YN-01 10 15600156 15600156 G A ITGA8 Nonsense_Mutation p.R895* 0.12 TCGA-CU-A0YN-01 10 15760853 15760853 G A ITGA8 Silent p.P85P 0.23 TCGA-CU-A0YN-01 10 21804178 21804178 A T SKIDA1 Silent p.I858I 0.24 TCGA-CU-A0YN-01 10 43662480 43662480 C T CSGALNACT2 Silent p.F396F 0.28 TCGA-CU-A0YN-01 10 46245583 46245583 G A FAM21C Missense_Mutation p.G258S 0.16 deleterious(0.02) probably_damaging(0.974) TCGA-CU-A0YN-01 10 6155497 6155497 C G RBM17 Missense_Mutation p.P295A 0.21 tolerated(0.08) probably_damaging(0.994) TCGA-CU-A0YN-01 10 61829047 61829047 T C ANK3 Silent p.K3864K 0.24 TCGA-CU-A0YN-01 10 71677085 71677085 C T COL13A1 Missense_Mutation p.A331V 0.14 tolerated(0.32) benign(0.243) TCGA-CU-A0YN-01 10 91061723 91061723 T C IFIT2 5'UTR 0.33 TCGA-CU-A0YN-01 11 21592405 21592405 T C NELL1 Silent p.S692S 0.23 TCGA-CU-A0YN-01 11 32635179 32635179 A G CCDC73 Silent p.T895T 0.23 TCGA-CU-A0YN-01 11 33360345 33360345 G A HIPK3 Missense_Mutation p.E462K 0.23 deleterious(0) probably_damaging(0.999) TCGA-CU-A0YN-01 11 55036744 55036744 C T TRIM48 Missense_Mutation p.P202L 0.31 tolerated(0.11) possibly_damaging(0.859) TCGA-CU-A0YN-01 11 56230095 56230095 G T OR5M9 Silent p.P261P 0.28 TCGA-CU-A0YN-01 11 56510738 56510738 A G OR9G4 Missense_Mutation p.C184R 0.36 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 11 57137457 57137457 C - P2RX3 Frame_Shift_Del p.I395* 0.17 TCGA-CU-A0YN-01 11 59224536 59224536 T C OR4D6 Missense_Mutation p.Y35H 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-CU-A0YN-01 11 65266577 65266577 C A MALAT1 RNA 0.29 TCGA-CU-A0YN-01 11 67942531 67942531 T C SUV420H1 Missense_Mutation p.Y166C 0.33 deleterious(0.02) benign(0.099) TCGA-CU-A0YN-01 11 72412744 72412744 T C ARAP1 Missense_Mutation p.Y751C 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-CU-A0YN-01 11 99941209 99941209 C A CNTN5 Missense_Mutation p.P406T 0.46 tolerated(0.27) benign(0.063) TCGA-CU-A0YN-01 12 110290277 110290277 C T GLTP 3'UTR 0.16 TCGA-CU-A0YN-01 12 121706440 121706440 C T CAMKK2 Splice_Site p.X209_splice 0.24 TCGA-CU-A0YN-01 12 52282069 52282069 G A ANKRD33 Nonsense_Mutation p.W33* 0.24 TCGA-CU-A0YN-01 12 57600372 57600372 G A LRP1 Missense_Mutation p.D3903N 0.41 possibly_damaging(0.84) TCGA-CU-A0YN-01 12 8083900 8083900 G T SLC2A3 Silent p.R151R 0.30 TCGA-CU-A0YN-01 12 91347836 91347836 G A CCER1 Silent p.A228A 0.37 TCGA-CU-A0YN-01 13 23909550 23909550 T C SACS Missense_Mutation p.N2822S 0.13 possibly_damaging(0.754) TCGA-CU-A0YN-01 13 26273338 26273338 T A ATP8A2 Missense_Mutation p.C747S 0.41 tolerated(0.09) probably_damaging(0.991) TCGA-CU-A0YN-01 13 30110084 30110084 C T SLC7A1 Missense_Mutation p.G81D 0.20 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 13 47469988 47469988 T C HTR2A Silent p.L18L 0.16 TCGA-CU-A0YN-01 13 48947629 48947629 G C RB1 Splice_Site p.X405_splice 0.11 TCGA-CU-A0YN-01 13 49027248 49027248 G A RB1 Splice_Site p.X605_splice 0.33 TCGA-CU-A0YN-01 13 52604079 52604079 G A UTP14C Missense_Mutation p.S380N 0.39 tolerated(0.14) benign(0.056) TCGA-CU-A0YN-01 13 53211535 53211535 G A HNRNPA1L2 5'UTR 0.42 TCGA-CU-A0YN-01 13 61041463 61041463 G T TDRD3 Missense_Mutation p.V149F 0.38 deleterious(0) possibly_damaging(0.692) TCGA-CU-A0YN-01 13 67799771 67799771 G A PCDH9 Silent p.D934D 0.10 TCGA-CU-A0YN-01 14 106207966 106207966 G C IGHG1 Silent p.P279P 0.14 TCGA-CU-A0YN-01 14 106494311 106494311 G T IGHV2-5 Missense_Mutation p.P61T 0.19 deleterious(0.02) benign(0.289) TCGA-CU-A0YN-01 14 19377902 19377903 - A OR11H12 Frame_Shift_Ins p.N106Kfs*31 0.12 TCGA-CU-A0YN-01 14 20612221 20612221 G T OR4N5 Silent p.A109A 0.27 TCGA-CU-A0YN-01 14 21992660 21992660 T C SALL2 Missense_Mutation p.Y401C 0.20 deleterious(0) probably_damaging(0.999) TCGA-CU-A0YN-01 14 22466322 22466322 G T TRAV17 Silent p.T84T 0.31 TCGA-CU-A0YN-01 14 31637558 31637558 C A HECTD1 Missense_Mutation p.R523M 0.23 deleterious(0.01) possibly_damaging(0.862) TCGA-CU-A0YN-01 14 38724033 38724033 C T CLEC14A Missense_Mutation p.V399I 0.22 tolerated(0.12) probably_damaging(0.997) TCGA-CU-A0YN-01 14 74756769 74756769 T A ABCD4 Silent p.P460P 0.37 TCGA-CU-A0YN-01 14 74988700 74988700 C T LTBP2 Missense_Mutation p.R901H 0.08 tolerated(0.45) benign(0.026) TCGA-CU-A0YN-01 15 101041925 101041925 G A CERS3 Missense_Mutation p.P44S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CU-A0YN-01 15 25226945 25226945 C A SNRPN 3'Flank 0.19 TCGA-CU-A0YN-01 15 28421740 28421740 C A HERC2 Missense_Mutation p.V3174L 0.27 probably_damaging(0.998) TCGA-CU-A0YN-01 15 28421741 28421741 C A HERC2 Missense_Mutation p.L3173F 0.26 benign(0.049) TCGA-CU-A0YN-01 15 28599941 28599941 G A RP11-483E23.2 RNA 0.21 TCGA-CU-A0YN-01 15 43427845 43427845 A G TMEM62 Missense_Mutation p.H143R 0.10 deleterious(0.02) probably_damaging(1) TCGA-CU-A0YN-01 15 62176469 62176469 C T VPS13C Splice_Site p.X3114_splice 0.21 TCGA-CU-A0YN-01 15 78893669 78893669 G T CHRNA3 Missense_Mutation p.P439T 0.30 deleterious(0.02) probably_damaging(1) TCGA-CU-A0YN-01 15 83935803 83935803 G A BNC1 Missense_Mutation p.P74S 0.28 tolerated(0.61) probably_damaging(0.918) TCGA-CU-A0YN-01 15 99023900 99023900 G A FAM169B Missense_Mutation p.S38F 0.39 deleterious(0) probably_damaging(0.971) TCGA-CU-A0YN-01 15 99715294 99715294 C T TTC23 Missense_Mutation p.A276T 0.32 deleterious(0) probably_damaging(0.981) TCGA-CU-A0YN-01 16 20966209 20966209 A G DNAH3 Missense_Mutation p.M3666T 0.27 tolerated(0.59) benign(0.007) TCGA-CU-A0YN-01 16 21117941 21117941 G T DNAH3 Missense_Mutation p.N718K 0.27 tolerated(0.06) benign(0.027) TCGA-CU-A0YN-01 16 27460030 27460030 A T IL21R Missense_Mutation p.K348M 0.25 deleterious(0.02) possibly_damaging(0.717) TCGA-CU-A0YN-01 16 30793590 30793590 C T ZNF629 Missense_Mutation p.E687K 0.39 deleterious(0.02) probably_damaging(0.986) TCGA-CU-A0YN-01 16 49671865 49671865 C T ZNF423 Missense_Mutation p.D400N 0.40 tolerated(0.37) benign(0.001) TCGA-CU-A0YN-01 16 61935121 61935121 C A CDH8 Missense_Mutation p.G170V 0.34 deleterious(0) benign(0.34) TCGA-CU-A0YN-01 16 61935122 61935122 C A CDH8 Nonsense_Mutation p.G170* 0.34 TCGA-CU-A0YN-01 16 86601425 86601425 C T FOXC2 Silent p.L162L 0.36 TCGA-CU-A0YN-01 17 21731532 21731532 G A UBBP4 Missense_Mutation p.E203K 0.24 tolerated(0.08) possibly_damaging(0.855) TCGA-CU-A0YN-01 17 33479931 33479931 C T UNC45B Missense_Mutation p.T134I 0.15 deleterious(0.05) possibly_damaging(0.486) TCGA-CU-A0YN-01 17 33496943 33496943 T G UNC45B Missense_Mutation p.C514G 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-CU-A0YN-01 17 39659035 39659035 G A KRT13 Silent p.T309T 0.21 TCGA-CU-A0YN-01 17 40370182 40370182 C T STAT5B Missense_Mutation p.E386K 0.38 tolerated(0.09) benign(0.006) TCGA-CU-A0YN-01 17 66871845 66871845 G A ABCA8 Missense_Mutation p.T1427M 0.41 deleterious(0.04) benign(0.302) TCGA-CU-A0YN-01 17 68171213 68171213 C T KCNJ2 Silent p.I11I 0.34 TCGA-CU-A0YN-01 17 76497363 76497363 G T DNAH17 Silent p.R1782R 0.22 TCGA-CU-A0YN-01 17 78293139 78293139 G A RNF213 Intron 0.21 TCGA-CU-A0YN-01 18 32395882 32395882 A T DTNA Missense_Mutation p.T205S 0.09 tolerated(0.36) benign(0.03) TCGA-CU-A0YN-01 19 11489402 11489402 C G EPOR Missense_Mutation p.E294Q 0.04 tolerated(0.17) benign(0.111) TCGA-CU-A0YN-01 19 13988556 13988556 G T NANOS3 Missense_Mutation p.R165L 0.64 tolerated_low_confidence(0.07) unknown(0) TCGA-CU-A0YN-01 19 2290293 2290293 G A LINGO3 Silent p.L495L 0.29 TCGA-CU-A0YN-01 19 2413950 2413950 C T TMPRSS9 Missense_Mutation p.P469S 0.12 tolerated(0.16) benign(0.006) TCGA-CU-A0YN-01 19 2433947 2433947 G A LMNB2 Silent p.G453G 0.14 TCGA-CU-A0YN-01 19 2433965 2433965 G A LMNB2 Silent p.S447S 0.16 TCGA-CU-A0YN-01 19 3623701 3623701 G A CACTIN Silent p.T209T 0.11 TCGA-CU-A0YN-01 19 38931454 38931454 G A RYR1 Missense_Mutation p.E39K 0.19 possibly_damaging(0.844) TCGA-CU-A0YN-01 19 53854662 53854662 G A ZNF845 Missense_Mutation p.C245Y 0.39 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 19 57325002 57325002 C G PEG3 3'UTR 0.24 TCGA-CU-A0YN-01 19 58491249 58491249 C T ZNF606 Missense_Mutation p.D267N 0.44 tolerated(0.34) benign(0.002) TCGA-CU-A0YN-01 19 9067793 9067793 C G MUC16 Missense_Mutation p.K6551N 0.30 unknown(0) TCGA-CU-A0YN-01 1 101704696 101704696 C A S1PR1 Missense_Mutation p.F52L 0.32 tolerated(0.17) benign(0.008) TCGA-CU-A0YN-01 1 101704697 101704697 A T S1PR1 Missense_Mutation p.I53F 0.33 deleterious(0) benign(0.197) TCGA-CU-A0YN-01 1 110085756 110085756 G T GPR61 Missense_Mutation p.D38Y 0.12 deleterious(0) benign(0.441) TCGA-CU-A0YN-01 1 12253005 12253005 G C TNFRSF1B Missense_Mutation p.A213P 0.27 tolerated(1) benign(0.001) TCGA-CU-A0YN-01 1 154548504 154548504 G A CHRNB2 3'UTR 0.28 TCGA-CU-A0YN-01 1 156212941 156212941 C A BGLAP Nonsense_Mutation p.Y97* 0.23 TCGA-CU-A0YN-01 1 158631163 158631163 C T SPTA1 Missense_Mutation p.R834K 0.21 tolerated(1) probably_damaging(0.997) TCGA-CU-A0YN-01 1 158670235 158670235 C A OR6K2 Nonsense_Mutation p.E70* 0.15 TCGA-CU-A0YN-01 1 158670236 158670236 C G OR6K2 Silent p.L69L 0.16 TCGA-CU-A0YN-01 1 158736303 158736303 G A OR6N1 Missense_Mutation p.T57I 0.23 deleterious(0.03) benign(0.003) TCGA-CU-A0YN-01 1 181018369 181018369 G A MR1 Silent p.R83R 0.22 TCGA-CU-A0YN-01 1 18152501 18152501 C G ACTL8 Silent p.R196R 0.14 TCGA-CU-A0YN-01 1 181725138 181725138 C T CACNA1E Missense_Mutation p.R1346W 0.19 deleterious(0) probably_damaging(0.978) TCGA-CU-A0YN-01 1 193038543 193038543 G A TROVE2 Missense_Mutation p.R120H 0.29 deleterious(0.03) probably_damaging(0.934) TCGA-CU-A0YN-01 1 196658607 196658607 G A CFH Missense_Mutation p.R341H 0.19 tolerated(0.21) benign(0.008) TCGA-CU-A0YN-01 1 205538365 205538365 C T MFSD4 Silent p.V56V 0.30 TCGA-CU-A0YN-01 1 41101634 41101634 G A RIMS3 Missense_Mutation p.R105W 0.07 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-CU-A0YN-01 1 50666658 50666658 T C ELAVL4 Silent p.F320F 0.21 TCGA-CU-A0YN-01 1 55464829 55464829 G A BSND 5'UTR 0.25 TCGA-CU-A0YN-01 1 75622760 75622760 T A LHX8 Missense_Mutation p.D331E 0.50 tolerated(0.53) benign(0.028) TCGA-CU-A0YN-01 1 91739336 91739336 C A HFM1 Missense_Mutation p.M1235I 0.08 tolerated_low_confidence(0.2) benign(0.021) TCGA-CU-A0YN-01 1 99772549 99772549 C A LPPR4 Silent p.R759R 0.42 TCGA-CU-A0YN-01 20 37662873 37662873 G T DHX35 Missense_Mutation p.Q660H 0.22 tolerated(0.31) benign(0.073) TCGA-CU-A0YN-01 20 3869842 3869842 C A PANK2 Missense_Mutation p.T32N 0.10 tolerated_low_confidence(0.19) benign(0) TCGA-CU-A0YN-01 20 45022241 45022241 C T ELMO2 Splice_Site p.X40_splice 0.33 TCGA-CU-A0YN-01 20 57768011 57768011 G A ZNF831 Missense_Mutation p.R646K 0.26 tolerated(0.32) benign(0.007) TCGA-CU-A0YN-01 20 61572869 61572869 A G GID8 Silent p.E5E 0.21 TCGA-CU-A0YN-01 21 11029673 11029673 G T BAGE2 RNA 0.04 TCGA-CU-A0YN-01 21 17203740 17203740 C T USP25 Silent p.A595A 0.14 TCGA-CU-A0YN-01 21 45504129 45504129 G A TRAPPC10 Missense_Mutation p.V789M 0.10 tolerated(0.12) possibly_damaging(0.873) TCGA-CU-A0YN-01 21 46910215 46910215 C T COL18A1 Silent p.P842P 0.33 TCGA-CU-A0YN-01 22 24313540 24313540 T C DDTL Missense_Mutation p.I117T 0.39 tolerated_low_confidence(1) benign(0) TCGA-CU-A0YN-01 2 106694282 106694282 G A C2orf40 Missense_Mutation p.G116D 0.37 tolerated_low_confidence(0.28) benign(0.016) TCGA-CU-A0YN-01 2 136872564 136872564 A C CXCR4 Missense_Mutation p.S316A 0.38 deleterious(0.02) probably_damaging(0.96) TCGA-CU-A0YN-01 2 138414424 138414424 T C THSD7B Silent p.D1391D 0.39 TCGA-CU-A0YN-01 2 141283905 141283905 T C LRP1B Missense_Mutation p.T2593A 0.40 possibly_damaging(0.523) TCGA-CU-A0YN-01 2 179472164 179472164 C T TTN Missense_Mutation p.G17751S 0.38 TCGA-CU-A0YN-01 2 179583684 179583684 T A TTN Missense_Mutation p.E8081D 0.50 TCGA-CU-A0YN-01 2 215854127 215854127 C T ABCA12 Nonsense_Mutation p.W1252* 0.37 TCGA-CU-A0YN-01 2 228552068 228552068 T G SLC19A3 3'UTR 0.35 TCGA-CU-A0YN-01 2 27551030 27551030 C T GTF3C2 Silent p.P761P 0.36 TCGA-CU-A0YN-01 2 3627748 3627748 C T RPS7 Silent p.F135F 0.41 TCGA-CU-A0YN-01 3 113145001 113145001 G C WDR52 Nonsense_Mutation p.S126* 0.35 TCGA-CU-A0YN-01 3 121305213 121305213 T A ARGFX Missense_Mutation p.D238E 0.35 deleterious(0.04) probably_damaging(0.935) TCGA-CU-A0YN-01 3 121345737 121345737 C T FBXO40 Nonsense_Mutation p.R704* 0.33 TCGA-CU-A0YN-01 3 129034521 129034521 C G H1FX Missense_Mutation p.K75N 0.64 tolerated(0.08) probably_damaging(0.976) TCGA-CU-A0YN-01 3 129034529 129034529 C T H1FX Missense_Mutation p.E73K 0.58 tolerated(0.13) possibly_damaging(0.817) TCGA-CU-A0YN-01 3 138738777 138738777 C T PRR23B Missense_Mutation p.G243S 0.18 tolerated(0.46) possibly_damaging(0.624) TCGA-CU-A0YN-01 3 150916249 150916249 G A GPR171 Nonsense_Mutation p.Q309* 0.33 TCGA-CU-A0YN-01 3 33135765 33135765 G A TMPPE 5'UTR 0.22 TCGA-CU-A0YN-01 3 42906025 42906025 G A ACKR2 Missense_Mutation p.A11T 0.33 tolerated(1) benign(0.001) TCGA-CU-A0YN-01 3 47461048 47461048 G - SCAP Frame_Shift_Del p.S571Afs*45 0.12 TCGA-CU-A0YN-01 3 50369047 50369047 C T RASSF1 Missense_Mutation p.V239M 0.12 deleterious(0) probably_damaging(0.997) TCGA-CU-A0YN-01 4 104061057 104061057 A G CENPE Silent p.L2031L 0.33 TCGA-CU-A0YN-01 4 126412722 126412722 C - FAT4 Frame_Shift_Del p.N4915Kfs*5 0.27 TCGA-CU-A0YN-01 4 138452261 138452261 C A PCDH18 Missense_Mutation p.D328Y 0.05 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 4 155719125 155719125 T C RBM46 Missense_Mutation p.F105S 0.41 deleterious(0) probably_damaging(0.991) TCGA-CU-A0YN-01 4 156838600 156838600 T C TDO2 Missense_Mutation p.I317T 0.43 deleterious(0) possibly_damaging(0.551) TCGA-CU-A0YN-01 4 17606232 17606232 G T LAP3 Missense_Mutation p.G401V 0.08 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 4 183696288 183696288 C T TENM3 Silent p.V1762V 0.31 TCGA-CU-A0YN-01 4 22749341 22749341 G C GBA3 Missense_Mutation p.V237L 0.17 tolerated(0.23) benign(0) TCGA-CU-A0YN-01 4 2701490 2701490 G T FAM193A Missense_Mutation p.E906D 0.15 tolerated(0.07) probably_damaging(0.979) TCGA-CU-A0YN-01 4 5564598 5564598 T A EVC2 Missense_Mutation p.M1302L 0.31 deleterious(0.02) benign(0.001) TCGA-CU-A0YN-01 4 74357676 74357676 G T AFM Missense_Mutation p.G311C 0.38 deleterious(0) probably_damaging(0.986) TCGA-CU-A0YN-01 4 74853045 74853045 G T PPBP Missense_Mutation p.P111T 0.41 deleterious(0) probably_damaging(0.995) TCGA-CU-A0YN-01 4 85781566 85781566 C T WDFY3 Missense_Mutation p.R60K 0.30 tolerated(1) benign(0.014) TCGA-CU-A0YN-01 4 90035429 90035429 G T TIGD2 Missense_Mutation p.R435L 0.37 deleterious(0.04) benign(0.051) TCGA-CU-A0YN-01 5 101631645 101631645 G A SLCO4C1 Silent p.L108L 0.04 TCGA-CU-A0YN-01 5 129521508 129521508 T - CHSY3 3'UTR 0.11 TCGA-CU-A0YN-01 5 138209838 138209838 A C LRRTM2 Missense_Mutation p.L138V 0.40 tolerated(0.16) possibly_damaging(0.557) TCGA-CU-A0YN-01 5 140517344 140517344 G T PCDHB5 Missense_Mutation p.Q776H 0.33 tolerated_low_confidence(0.15) benign(0.011) TCGA-CU-A0YN-01 5 140616205 140616205 G A PCDHB18 RNA 0.28 TCGA-CU-A0YN-01 5 140795157 140795157 A G PCDHGA10 Missense_Mutation p.I805M 0.26 tolerated_low_confidence(0.17) benign(0.163) TCGA-CU-A0YN-01 5 148632376 148632376 G T ABLIM3 Missense_Mutation p.K638N 0.25 deleterious(0) benign(0.199) TCGA-CU-A0YN-01 5 150934193 150934193 G A FAT2 Silent p.T1225T 0.13 TCGA-CU-A0YN-01 5 176314051 176314051 T A HK3 Silent p.P603P 0.24 TCGA-CU-A0YN-01 5 176813554 176813554 G A SLC34A1 Missense_Mutation p.M173I 0.13 deleterious(0.03) possibly_damaging(0.596) TCGA-CU-A0YN-01 5 33576735 33576735 G A ADAMTS12 Silent p.S1132S 0.18 TCGA-CU-A0YN-01 5 34008088 34008089 CG - AMACR Frame_Shift_Del p.G13Pfs*13 0.18 TCGA-CU-A0YN-01 5 40843579 40843579 A G CARD6 Silent p.L203L 0.23 TCGA-CU-A0YN-01 5 41927133 41927133 A G FBXO4 Missense_Mutation p.I70V 0.32 tolerated(0.1) benign(0.203) TCGA-CU-A0YN-01 5 82816650 82816650 A T VCAN Missense_Mutation p.D842V 0.17 deleterious(0.04) benign(0.075) TCGA-CU-A0YN-01 5 88047694 88047694 G A MEF2C Missense_Mutation p.P208L 0.10 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 5 92956665 92956665 G A FAM172A 3'UTR 0.40 TCGA-CU-A0YN-01 5 94275893 94275893 T A MCTP1 Silent p.T356T 0.29 TCGA-CU-A0YN-01 6 147704100 147704100 C G STXBP5 Nonsense_Mutation p.S1127* 0.40 TCGA-CU-A0YN-01 6 149893469 149893469 T C GINM1 Missense_Mutation p.S57P 0.29 deleterious(0.05) possibly_damaging(0.742) TCGA-CU-A0YN-01 6 163235240 163235240 G A PACRG Missense_Mutation p.R73Q 0.16 deleterious(0) probably_damaging(0.994) TCGA-CU-A0YN-01 6 31675681 31675681 C - LY6G6F Frame_Shift_Del p.C141Afs*17 0.22 TCGA-CU-A0YN-01 6 41184905 41184905 C T TREML3P RNA 0.44 TCGA-CU-A0YN-01 6 43226925 43226925 T C TTBK1 Missense_Mutation p.V389A 0.10 benign(0.002) TCGA-CU-A0YN-01 6 75977363 75977363 T C TMEM30A Silent p.S113S 0.16 TCGA-CU-A0YN-01 6 80723066 80723066 G T TTK Nonsense_Mutation p.E323* 0.26 TCGA-CU-A0YN-01 6 96990871 96990871 G A UFL1 Missense_Mutation p.E461K 0.33 deleterious(0.04) possibly_damaging(0.493) TCGA-CU-A0YN-01 7 100817986 100817986 C T NAT16 Missense_Mutation p.E35K 0.14 tolerated(0.52) benign(0.015) TCGA-CU-A0YN-01 7 115596823 115596823 A T TFEC Missense_Mutation p.Y98N 0.36 deleterious(0) probably_damaging(0.999) TCGA-CU-A0YN-01 7 128850949 128850949 C A SMO Missense_Mutation p.P599H 0.28 deleterious(0) probably_damaging(0.992) TCGA-CU-A0YN-01 7 138822608 138822608 G A TTC26 Missense_Mutation p.G53R 0.22 deleterious(0.02) possibly_damaging(0.516) TCGA-CU-A0YN-01 7 142622811 142622811 G A TRPV5 Missense_Mutation p.P312L 0.14 deleterious(0) probably_damaging(1) TCGA-CU-A0YN-01 7 39612007 39612007 C G YAE1D1 Missense_Mutation p.S128C 0.27 deleterious(0) benign(0.312) TCGA-CU-A0YN-01 7 44190672 44190672 G A GCK Silent p.L123L 0.38 TCGA-CU-A0YN-01 7 72657445 72657445 C A GTF2IRD2P1 RNA 0.30 TCGA-CU-A0YN-01 8 110100523 110100523 G A TRHR Missense_Mutation p.R261K 0.25 deleterious(0.02) possibly_damaging(0.897) TCGA-CU-A0YN-01 8 113657416 113657416 T C CSMD3 Missense_Mutation p.I1078V 0.33 tolerated(0.27) benign(0.155) TCGA-CU-A0YN-01 8 122626275 122626275 G A HAS2 3'UTR 0.24 TCGA-CU-A0YN-01 8 25234819 25234819 A G DOCK5 Splice_Site p.X1273_splice 0.46 TCGA-CU-A0YN-01 8 27516466 27516466 G A SCARA3 Missense_Mutation p.R260Q 0.36 tolerated(0.47) benign(0.11) TCGA-CU-A0YN-01 8 30209778 30209778 T C TUBBP1 RNA 0.35 TCGA-CU-A0YN-01 8 67357551 67357551 T A ADHFE1 Missense_Mutation p.L151Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-CU-A0YN-01 8 70981498 70981498 C G PRDM14 Missense_Mutation p.E200Q 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-CU-A0YN-01 8 88885212 88885212 C A DCAF4L2 Missense_Mutation p.A330S 0.31 tolerated(0.13) benign(0.017) TCGA-CU-A0YN-01 8 94827619 94827619 G A TMEM67 Missense_Mutation p.D951N 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-CU-A0YN-01 9 127996239 127996239 A G RABEPK Missense_Mutation p.I367V 0.32 tolerated(0.33) benign(0.002) TCGA-CU-A0YN-01 9 132375441 132375441 T C C9orf50 Missense_Mutation p.Q378R 0.27 tolerated(0.96) benign(0.446) TCGA-CU-A0YN-01 9 133911631 133911631 C T LAMC3 Silent p.T296T 0.26 TCGA-CU-A0YN-01 9 137777143 137777143 C A FCN2 Silent p.T120T 0.23 TCGA-CU-A0YN-01 9 139396836 139396836 G T NOTCH1 Missense_Mutation p.R1758S 0.07 deleterious(0.04) possibly_damaging(0.877) TCGA-CU-A0YN-01 9 6007430 6007430 G A KIAA2026 Missense_Mutation p.R120C 0.12 tolerated_low_confidence(0.17) possibly_damaging(0.556) TCGA-CU-A0YN-01 9 88953842 88953842 C T ZCCHC6 Missense_Mutation p.A411T 0.20 tolerated(0.06) probably_damaging(1) TCGA-CU-A0YN-01 X 101138751 101138751 C T ZMAT1 Missense_Mutation p.E550K 0.53 tolerated(0.07) possibly_damaging(0.637) TCGA-CU-A0YN-01 X 101141649 101141649 A G ZMAT1 Missense_Mutation p.L187S 0.51 tolerated(0.1) benign(0.21) TCGA-CU-A0YN-01 X 102348006 102348006 G A NXF3 5'UTR 0.53 TCGA-CU-A0YN-01 X 44401284 44401284 T C FUNDC1 Missense_Mutation p.Q31R 0.47 tolerated(0.37) benign(0.003) TCGA-CU-A0YN-01 X 91132785 91132785 G C PCDH11X Missense_Mutation p.D516H 0.57 deleterious(0.02) probably_damaging(1) TCGA-CU-A0YO-01 10 103547231 103547231 A G MGEA5 Missense_Mutation p.F835S 0.07 deleterious(0.02) possibly_damaging(0.844) TCGA-CU-A0YO-01 10 15614236 15614236 G A ITGA8 Missense_Mutation p.P871S 0.19 tolerated(0.91) benign(0.006) TCGA-CU-A0YO-01 10 49667753 49667753 G A ARHGAP22 Silent p.D227D 0.09 TCGA-CU-A0YO-01 10 75013653 75013653 C G TTC18 3'UTR 0.07 TCGA-CU-A0YO-01 11 107677535 107677535 C T SLC35F2 Missense_Mutation p.R161K 0.15 tolerated(0.84) benign(0.004) TCGA-CU-A0YO-01 11 111959637 111959637 C T SDHD Silent p.V72V 0.25 TCGA-CU-A0YO-01 11 116692360 116692360 G T APOA4 Nonsense_Mutation p.Y138* 0.21 TCGA-CU-A0YO-01 11 124755027 124755027 G A ROBO4 Missense_Mutation p.R971W 0.15 tolerated(0.09) benign(0.025) TCGA-CU-A0YO-01 11 17553040 17553040 C T USH1C Missense_Mutation p.E52K 0.19 deleterious(0.01) possibly_damaging(0.593) TCGA-CU-A0YO-01 11 61675662 61675662 G C RAB3IL1 Missense_Mutation p.S43C 0.21 tolerated(0.1) benign(0.003) TCGA-CU-A0YO-01 11 6291461 6291461 G A CCKBR Missense_Mutation p.G183R 0.16 tolerated(0.06) possibly_damaging(0.451) TCGA-CU-A0YO-01 11 64557669 64557669 C G MAP4K2 Missense_Mutation p.E747Q 0.12 deleterious(0.04) possibly_damaging(0.792) TCGA-CU-A0YO-01 12 123057784 123057784 G C KNTC1 Missense_Mutation p.M745I 0.16 tolerated(0.49) benign(0.001) TCGA-CU-A0YO-01 12 123057806 123057806 G A KNTC1 Missense_Mutation p.E753K 0.15 deleterious(0) probably_damaging(0.971) TCGA-CU-A0YO-01 12 27077408 27077408 C A ASUN Silent p.P228P 0.21 TCGA-CU-A0YO-01 12 4835834 4835834 G C GALNT8 Missense_Mutation p.M116I 0.07 tolerated(0.09) benign(0.001) TCGA-CU-A0YO-01 12 51279250 51279250 C G TMPRSS12 Intron 0.27 TCGA-CU-A0YO-01 12 58157882 58157882 T G CYP27B1 Missense_Mutation p.N405T 0.28 deleterious(0.04) benign(0.328) TCGA-CU-A0YO-01 13 36401843 36401843 G C DCLK1 Missense_Mutation p.P446A 0.12 deleterious(0.01) possibly_damaging(0.728) TCGA-CU-A0YO-01 13 48985928 48985928 A C LPAR6 Nonsense_Mutation p.L211* 0.14 TCGA-CU-A0YO-01 14 101492118 101492118 G A MIR323A RNA 0.07 TCGA-CU-A0YO-01 14 52735281 52735281 G A PTGDR Missense_Mutation p.G250E 0.19 tolerated(1) benign(0.001) TCGA-CU-A0YO-01 14 63784372 63784372 C T GPHB5 RNA 0.11 TCGA-CU-A0YO-01 14 69371375 69371375 C T ACTN1 Missense_Mutation p.E225K 0.06 deleterious(0) probably_damaging(0.939) TCGA-CU-A0YO-01 14 99182494 99182494 G C C14orf177 5'UTR 0.09 TCGA-CU-A0YO-01 15 41372084 41372084 T A INO80 Nonsense_Mutation p.K316* 0.13 TCGA-CU-A0YO-01 15 44876169 44876169 A C SPG11 Missense_Mutation p.F1903L 0.20 tolerated(0.66) benign(0.019) TCGA-CU-A0YO-01 15 44876180 44876180 A C SPG11 Missense_Mutation p.Y1900D 0.20 deleterious(0) probably_damaging(0.955) TCGA-CU-A0YO-01 15 73994784 73994784 G A CD276 Missense_Mutation p.A90T 0.07 tolerated(0.46) benign(0.383) TCGA-CU-A0YO-01 15 87217600 87217600 C T AGBL1 Nonsense_Mutation p.Q1006* 0.23 TCGA-CU-A0YO-01 16 20352631 20352631 G A UMOD Silent p.T453T 0.17 TCGA-CU-A0YO-01 16 3486866 3486866 T G ZNF597 Missense_Mutation p.N278T 0.15 tolerated(0.37) benign(0.006) TCGA-CU-A0YO-01 16 5110356 5110356 G A C16orf89 Missense_Mutation p.T147M 0.16 tolerated(0.11) possibly_damaging(0.723) TCGA-CU-A0YO-01 16 61891104 61891104 C A CDH8 Missense_Mutation p.D196Y 0.19 deleterious(0) probably_damaging(1) TCGA-CU-A0YO-01 16 70575582 70575582 C T SF3B3 Nonsense_Mutation p.Q360* 0.15 TCGA-CU-A0YO-01 16 70884498 70884498 G A HYDIN Silent p.I4168I 0.12 TCGA-CU-A0YO-01 16 823284 823284 C T MSLNL Missense_Mutation p.A662T 0.15 benign(0.218) TCGA-CU-A0YO-01 17 10448678 10448678 G A MYH2 Nonsense_Mutation p.Q164* 0.14 TCGA-CU-A0YO-01 17 17080692 17080692 G A MPRIP Silent p.E975E 0.06 TCGA-CU-A0YO-01 17 17080713 17080713 G A MPRIP Silent p.T982T 0.08 TCGA-CU-A0YO-01 17 26942017 26942017 C T KIAA0100 3'UTR 0.09 TCGA-CU-A0YO-01 17 26971195 26971201 CCACAAG - KIAA0100 Frame_Shift_Del p.L25Sfs*16 0.08 TCGA-CU-A0YO-01 17 61568636 61568636 G A ACE Missense_Mutation p.V936M 0.11 tolerated(1) benign(0.057) TCGA-CU-A0YO-01 17 78022498 78022498 G A CCDC40 Missense_Mutation p.E265K 0.13 deleterious(0.03) benign(0.33) TCGA-CU-A0YO-01 17 78326609 78326609 G A RNF213 Intron 0.09 TCGA-CU-A0YO-01 17 78704398 78704398 G A RPTOR Silent p.L182L 0.12 TCGA-CU-A0YO-01 17 8216353 8216353 C T ARHGEF15 Missense_Mutation p.R239C 0.05 tolerated_low_confidence(1) benign(0) TCGA-CU-A0YO-01 18 21110070 21110070 C T C18orf8 Missense_Mutation p.H525Y 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-CU-A0YO-01 18 22048844 22048844 C G HRH4 Missense_Mutation p.L96V 0.21 deleterious(0.01) possibly_damaging(0.58) TCGA-CU-A0YO-01 18 22805418 22805418 T C ZNF521 Missense_Mutation p.I822V 0.08 tolerated(0.51) benign(0.163) TCGA-CU-A0YO-01 19 13029049 13029049 C T SYCE2 Missense_Mutation p.G40R 0.13 tolerated(0.72) benign(0.001) TCGA-CU-A0YO-01 19 36211795 36211795 A G KMT2B Missense_Mutation p.K516E 0.24 possibly_damaging(0.899) TCGA-CU-A0YO-01 19 39876761 39876761 C G PAF1 Missense_Mutation p.G489A 0.09 tolerated_low_confidence(0.5) unknown(0) TCGA-CU-A0YO-01 19 41631427 41631427 C A CYP2F1 Silent p.T394T 0.08 TCGA-CU-A0YO-01 19 51323464 51323464 C G KLK1 Missense_Mutation p.E148Q 0.15 tolerated(0.91) benign(0.005) TCGA-CU-A0YO-01 19 746578 746578 G A PALM Missense_Mutation p.D310N 0.19 deleterious(0) probably_damaging(0.999) TCGA-CU-A0YO-01 1 117078842 117078842 G C CD58 Missense_Mutation p.P125A 0.12 deleterious(0.02) probably_damaging(0.947) TCGA-CU-A0YO-01 1 1274986 1274986 G T DVL1 Silent p.R344R 0.09 TCGA-CU-A0YO-01 1 13001218 13001218 G C PRAMEF6 Silent p.L155L 0.07 TCGA-CU-A0YO-01 1 1423280 1423280 C T ATAD3B Missense_Mutation p.R418W 0.14 deleterious(0.03) possibly_damaging(0.468) TCGA-CU-A0YO-01 1 155720458 155720458 C A GON4L Nonsense_Mutation p.E2214* 0.19 TCGA-CU-A0YO-01 1 15755247 15755247 C T EFHD2 3'UTR 0.23 TCGA-CU-A0YO-01 1 1684482 1684482 G A NADK Missense_Mutation p.S546L 0.19 deleterious(0) probably_damaging(0.984) TCGA-CU-A0YO-01 1 17942532 17942532 C T ARHGEF10L Intron 0.22 TCGA-CU-A0YO-01 1 200571154 200571154 C G KIF14 Missense_Mutation p.M674I 0.16 deleterious(0) probably_damaging(0.99) TCGA-CU-A0YO-01 1 228547934 228547934 C T OBSCN Intron 0.10 TCGA-CU-A0YO-01 1 26800477 26800477 G C HMGN2 Intron 0.24 TCGA-CU-A0YO-01 1 27059204 27059204 C T ARID1A Missense_Mutation p.S614L 0.04 benign(0.307) TCGA-CU-A0YO-01 1 27059260 27059260 C T ARID1A Nonsense_Mutation p.Q633* 0.08 TCGA-CU-A0YO-01 1 40661404 40661404 T G RLF Missense_Mutation p.I192S 0.11 deleterious(0) probably_damaging(0.972) TCGA-CU-A0YO-01 1 53370432 53370432 C G ECHDC2 Silent p.L196L 0.16 TCGA-CU-A0YO-01 20 14307451 14307451 C G FLRT3 Silent p.R234R 0.10 TCGA-CU-A0YO-01 20 25405846 25405846 G A GINS1 Splice_Site p.X111_splice 0.21 TCGA-CU-A0YO-01 20 25666702 25666702 C T ZNF337 Silent p.L28L 0.13 TCGA-CU-A0YO-01 20 30513763 30513763 T C TTLL9 Intron 0.30 TCGA-CU-A0YO-01 20 31606901 31606901 C G BPIFB2 Missense_Mutation p.L297V 0.12 deleterious(0.01) probably_damaging(0.942) TCGA-CU-A0YO-01 20 43836572 43836572 A G SEMG1 Missense_Mutation p.N212D 0.08 tolerated(0.1) probably_damaging(0.998) TCGA-CU-A0YO-01 20 44879792 44879792 C T CDH22 Missense_Mutation p.G48R 0.47 tolerated(0.33) benign(0) TCGA-CU-A0YO-01 21 45173597 45173597 C T PDXK Silent p.L252L 0.10 TCGA-CU-A0YO-01 21 47627356 47627356 C T LSS Missense_Mutation p.D485N 0.34 deleterious(0.01) benign(0.033) TCGA-CU-A0YO-01 22 19839452 19839452 C T C22orf29 Silent p.P111P 0.12 TCGA-CU-A0YO-01 22 26839131 26839131 G A ASPHD2 Missense_Mutation p.E357K 0.17 deleterious(0) probably_damaging(0.99) TCGA-CU-A0YO-01 22 32097734 32097734 C T PRR14L Silent p.K2005K 0.18 TCGA-CU-A0YO-01 22 32099658 32099658 C A PRR14L Nonsense_Mutation p.E1960* 0.22 TCGA-CU-A0YO-01 22 34157439 34157439 G A LARGE Missense_Mutation p.R9W 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.719) TCGA-CU-A0YO-01 22 38329085 38329085 C G MICALL1 Silent p.V758V 0.11 TCGA-CU-A0YO-01 22 50987674 50987674 G A KLHDC7B Missense_Mutation p.G360E 0.17 deleterious(0) probably_damaging(1) TCGA-CU-A0YO-01 22 51009598 51009598 C T CPT1B Missense_Mutation p.G622R 0.15 tolerated(0.15) benign(0.016) TCGA-CU-A0YO-01 2 151326590 151326590 G A RND3 Missense_Mutation p.R216W 0.05 deleterious(0) probably_damaging(0.985) TCGA-CU-A0YO-01 2 169732631 169732631 A G SPC25 Silent p.S134S 0.06 TCGA-CU-A0YO-01 2 198540158 198540158 C T RFTN2 Missense_Mutation p.E9K 0.28 deleterious(0.01) possibly_damaging(0.823) TCGA-CU-A0YO-01 2 36805997 36805998 GC - FEZ2 Frame_Shift_Del p.R215Sfs*5 0.16 TCGA-CU-A0YO-01 2 88409880 88409880 G A SMYD1 Missense_Mutation p.R441Q 0.27 tolerated(0.13) possibly_damaging(0.791) TCGA-CU-A0YO-01 3 124728594 124728594 T C HEG1 Missense_Mutation p.K1050E 0.16 tolerated(0.21) benign(0.141) TCGA-CU-A0YO-01 3 136088080 136088080 T C STAG1 Silent p.Q805Q 0.17 TCGA-CU-A0YO-01 3 139181129 139181129 A G RBP2 Missense_Mutation p.I26T 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-CU-A0YO-01 3 158314703 158314703 G C MLF1 Missense_Mutation p.R114T 0.27 deleterious(0.02) probably_damaging(0.948) TCGA-CU-A0YO-01 3 170716012 170716012 G A SLC2A2 Silent p.F448F 0.14 TCGA-CU-A0YO-01 4 186544867 186544867 C A SORBS2 Silent p.R668R 0.10 TCGA-CU-A0YO-01 5 108436173 108436173 C T FER Silent p.D667D 0.09 TCGA-CU-A0YO-01 5 140710506 140710506 C T PCDHGA1 Silent p.I85I 0.08 TCGA-CU-A0YO-01 5 140736823 140736823 G T PCDHGA4 Missense_Mutation p.D686Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-CU-A0YO-01 5 140769617 140769617 G C PCDHGB4 Missense_Mutation p.W722C 0.13 deleterious(0.03) benign(0.021) TCGA-CU-A0YO-01 5 14359563 14359563 G C TRIO Missense_Mutation p.E772Q 0.08 probably_damaging(0.99) TCGA-CU-A0YO-01 5 3600733 3600733 C T IRX1 Silent p.L441L 0.06 TCGA-CU-A0YO-01 5 71493610 71493610 G C MAP1B Missense_Mutation p.K1476N 0.23 possibly_damaging(0.582) TCGA-CU-A0YO-01 5 78964813 78964813 C G PAPD4 Silent p.L390L 0.24 TCGA-CU-A0YO-01 5 80561982 80561982 G A CKMT2 Missense_Mutation p.D389N 0.09 deleterious(0.04) benign(0.256) TCGA-CU-A0YO-01 6 128150707 128150707 T G THEMIS Missense_Mutation p.K208T 0.21 tolerated(0.45) benign(0.136) TCGA-CU-A0YO-01 6 143825240 143825240 G A FUCA2 Missense_Mutation p.H188Y 0.20 deleterious(0) probably_damaging(0.953) TCGA-CU-A0YO-01 6 151116991 151116991 G C PLEKHG1 Splice_Site p.X195_splice 0.09 TCGA-CU-A0YO-01 6 151116998 151116998 G A PLEKHG1 Missense_Mutation p.E197K 0.09 deleterious(0.01) benign(0.158) TCGA-CU-A0YO-01 6 152651857 152651857 T C SYNE1 Missense_Mutation p.I4655V 0.12 benign(0.001) TCGA-CU-A0YO-01 6 29910346 29910346 C - HLA-A Frame_Shift_Del p.R7Efs*13 0.12 TCGA-CU-A0YO-01 6 30673687 30673687 C T MDC1 Silent p.E1091E 0.12 TCGA-CU-A0YO-01 6 31498940 31498940 G A DDX39B Nonsense_Mutation p.R338* 0.17 TCGA-CU-A0YO-01 6 38649846 38649846 G T GLO1 Nonsense_Mutation p.Y136* 0.13 TCGA-CU-A0YO-01 6 88776067 88776067 T C SPACA1 3'UTR 0.14 TCGA-CU-A0YO-01 6 99817466 99817466 C T COQ3 3'UTR 0.12 TCGA-CU-A0YO-01 7 100280314 100280315 - C GIGYF1 Frame_Shift_Ins p.G834Rfs*35 0.16 TCGA-CU-A0YO-01 7 100489998 100489998 C T ACHE Missense_Mutation p.A504T 0.15 tolerated(0.11) possibly_damaging(0.698) TCGA-CU-A0YO-01 7 122635518 122635518 G A TAS2R16 Silent p.F57F 0.24 TCGA-CU-A0YO-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.29 deleterious(0) probably_damaging(0.991) TCGA-CU-A0YO-01 7 897568 897568 G A SUN1 Missense_Mutation p.E500K 0.29 tolerated(0.05) benign(0.332) TCGA-CU-A0YO-01 8 11172556 11172556 G T MTMR9 Nonsense_Mutation p.E366* 0.16 TCGA-CU-A0YO-01 8 28651378 28651378 A G INTS9 Missense_Mutation p.F328S 0.06 deleterious(0) probably_damaging(1) TCGA-CU-A0YO-01 8 30537169 30537169 C T GSR Missense_Mutation p.M479I 0.08 tolerated(1) benign(0.279) TCGA-CU-A0YO-01 9 130986561 130986561 G C DNM1 Missense_Mutation p.E410Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-CU-A0YO-01 9 137664657 137664657 C T COL5A1 Missense_Mutation p.P770S 0.08 unknown(0) TCGA-CU-A0YO-01 X 133512098 133512098 G T PHF6 Nonsense_Mutation p.E68* 0.27 TCGA-CU-A0YO-01 X 152482885 152482885 G A MAGEA1 Silent p.T42T 0.26 TCGA-CU-A0YO-01 X 23019219 23019219 A T DDX53 Missense_Mutation p.I349F 0.05 deleterious(0) probably_damaging(0.982) TCGA-CU-A0YO-01 X 70339981 70339981 G C MED12 Missense_Mutation p.E172Q 0.35 possibly_damaging(0.63) TCGA-CU-A0YR-01 10 117607452 117607452 T G ATRNL1 Missense_Mutation p.F1323C 0.32 deleterious(0.02) possibly_damaging(0.535) TCGA-CU-A0YR-01 10 120819578 120819578 C G EIF3A Intron 0.13 TCGA-CU-A0YR-01 10 126727575 126727575 T A CTBP2 Missense_Mutation p.I17F 0.17 tolerated_low_confidence(0.08) benign(0.181) TCGA-CU-A0YR-01 10 134579295 134579295 G C INPP5A Missense_Mutation p.E308Q 0.23 deleterious(0) probably_damaging(0.913) TCGA-CU-A0YR-01 10 135369108 135369108 G T SYCE1 Silent p.R275R 0.25 TCGA-CU-A0YR-01 10 16911660 16911660 C T CUBN Nonsense_Mutation p.W3143* 0.43 TCGA-CU-A0YR-01 10 16911845 16911845 C G CUBN Missense_Mutation p.D3082H 0.40 tolerated(0.08) benign(0.03) TCGA-CU-A0YR-01 10 23290965 23290965 A G ARMC3 Missense_Mutation p.N515D 0.33 deleterious(0.02) benign(0.017) TCGA-CU-A0YR-01 10 79567584 79567584 T G DLG5 Missense_Mutation p.K1589T 0.13 deleterious(0) benign(0.051) TCGA-CU-A0YR-01 10 79769683 79769683 G A POLR3A Missense_Mutation p.S570L 0.29 tolerated(0.48) benign(0.006) TCGA-CU-A0YR-01 11 101833686 101833686 A T KIAA1377 Missense_Mutation p.E640D 0.14 tolerated(0.34) benign(0.048) TCGA-CU-A0YR-01 11 108218083 108218083 A T ATM Missense_Mutation p.I2888L 0.38 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 11 119170369 119170369 C T CBL Nonsense_Mutation p.Q867* 0.57 TCGA-CU-A0YR-01 11 126139231 126139231 C G FOXRED1 Intron 0.58 TCGA-CU-A0YR-01 11 14490389 14490389 C A COPB1 Missense_Mutation p.R661S 0.20 tolerated(0.66) benign(0.01) TCGA-CU-A0YR-01 11 15212291 15212291 A G INSC Silent p.T255T 0.41 TCGA-CU-A0YR-01 11 30033503 30033503 C T KCNA4 Silent p.L241L 0.37 TCGA-CU-A0YR-01 11 47359095 47359095 G C MYBPC3 Missense_Mutation p.R817G 0.16 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 11 4967692 4967692 A G OR51A4 Silent p.I213I 0.18 TCGA-CU-A0YR-01 11 4976305 4976305 A G OR51A2 Silent p.I213I 0.47 TCGA-CU-A0YR-01 11 7079645 7079645 C T NLRP14 Missense_Mutation p.A866V 0.47 tolerated(0.12) benign(0.198) TCGA-CU-A0YR-01 12 101595946 101595946 A T SLC5A8 Missense_Mutation p.N155K 0.39 deleterious(0) probably_damaging(0.939) TCGA-CU-A0YR-01 12 103249082 103249082 T A PAH Missense_Mutation p.M180L 0.13 deleterious(0) benign(0.001) TCGA-CU-A0YR-01 12 112499125 112499125 G A NAA25 Missense_Mutation p.A406V 0.49 tolerated(0.23) benign(0.006) TCGA-CU-A0YR-01 12 131487771 131487771 C T GPR133 Silent p.T356T 0.23 TCGA-CU-A0YR-01 12 133327289 133327289 T C ANKLE2 Missense_Mutation p.T263A 0.54 tolerated(0.3) benign(0.006) TCGA-CU-A0YR-01 12 21242857 21242857 C T SLCO1B7 Silent p.G580G 0.22 TCGA-CU-A0YR-01 12 22028606 22028606 C G ABCC9 Missense_Mutation p.D692H 0.14 deleterious(0.01) benign(0.393) TCGA-CU-A0YR-01 12 26492374 26492374 C T ITPR2 Missense_Mutation p.G2688R 0.08 deleterious_low_confidence(0) benign(0.389) TCGA-CU-A0YR-01 12 51856143 51856143 C T SLC4A8 Missense_Mutation p.A384V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CU-A0YR-01 12 56720613 56720613 A G PAN2 Silent p.S350S 0.44 TCGA-CU-A0YR-01 12 59271541 59271541 G C LRIG3 Missense_Mutation p.P726R 0.21 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 12 64815090 64815090 A G XPOT Missense_Mutation p.S307G 0.22 deleterious(0.03) benign(0.002) TCGA-CU-A0YR-01 12 6554303 6554303 C A CD27 Silent p.T14T 0.26 TCGA-CU-A0YR-01 12 6554304 6554304 C G CD27 Missense_Mutation p.L15V 0.27 deleterious(0.02) benign(0.266) TCGA-CU-A0YR-01 12 70672040 70672040 A T CNOT2 Nonsense_Mutation p.K12* 0.25 TCGA-CU-A0YR-01 12 76742124 76742126 CAT - BBS10 In_Frame_Del p.M5del 0.38 TCGA-CU-A0YR-01 13 35923273 35923273 A G NBEA Missense_Mutation p.I1978V 0.16 tolerated(0.35) benign(0.013) TCGA-CU-A0YR-01 13 38320157 38320157 G A TRPC4 Nonsense_Mutation p.R272* 0.28 TCGA-CU-A0YR-01 13 39612614 39612614 C G NHLRC3 5'UTR 0.22 TCGA-CU-A0YR-01 13 49833659 49833660 - GTAA CDADC1 Frame_Shift_Ins 0.14 TCGA-CU-A0YR-01 13 78178541 78178541 A G SCEL Missense_Mutation p.N383S 0.30 tolerated_low_confidence(0.18) benign(0.253) TCGA-CU-A0YR-01 14 106110214 106110214 G T IGHG2 Missense_Mutation p.T135N 0.49 deleterious(0.02) probably_damaging(0.994) TCGA-CU-A0YR-01 14 23344694 23344694 C T LRP10 Silent p.F179F 0.27 TCGA-CU-A0YR-01 14 37838794 37838794 C G MIPOL1 Missense_Mutation p.L301V 0.35 tolerated(0.11) benign(0.098) TCGA-CU-A0YR-01 14 37838795 37838795 T A MIPOL1 Missense_Mutation p.L301Q 0.35 deleterious(0) possibly_damaging(0.864) TCGA-CU-A0YR-01 15 29560949 29560949 T G NDNL2 3'UTR 0.27 TCGA-CU-A0YR-01 15 39910371 39910371 T C FSIP1 Missense_Mutation p.I422V 0.44 tolerated(0.27) benign(0.011) TCGA-CU-A0YR-01 15 99250976 99250976 G A IGF1R Missense_Mutation p.E94K 0.10 deleterious(0.03) possibly_damaging(0.756) TCGA-CU-A0YR-01 16 15224610 15224610 C T RP11-1186N24.5 RNA 0.30 TCGA-CU-A0YR-01 16 19867913 19867913 C G IQCK 3'UTR 0.19 TCGA-CU-A0YR-01 16 449378 449378 G A NME4 Splice_Site p.X76_splice 0.31 TCGA-CU-A0YR-01 16 5075418 5075418 C T NAGPA 3'UTR 0.50 TCGA-CU-A0YR-01 16 67692470 67692470 G T ACD Missense_Mutation p.P359T 0.17 tolerated(0.07) benign(0.037) TCGA-CU-A0YR-01 16 67863976 67863976 G A CENPT Missense_Mutation p.A293V 0.46 tolerated(0.08) benign(0.439) TCGA-CU-A0YR-01 16 70834774 70834774 G T VAC14 Silent p.L10L 0.10 TCGA-CU-A0YR-01 16 71319027 71319027 A C CMTR2 Missense_Mutation p.L266R 0.32 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 16 72205093 72205101 TACCTCATC - PMFBP1 Splice_Site p.X3_splice 0.10 TCGA-CU-A0YR-01 17 18196135 18196135 T C TOP3A Missense_Mutation p.I369V 0.35 tolerated(0.11) benign(0.031) TCGA-CU-A0YR-01 17 28405458 28405458 C G EFCAB5 Missense_Mutation p.A988G 0.29 deleterious(0) probably_damaging(0.976) TCGA-CU-A0YR-01 17 29631980 29631980 C G EVI2B Missense_Mutation p.L216F 0.25 tolerated(0.06) probably_damaging(0.934) TCGA-CU-A0YR-01 17 3920781 3920781 C T ZZEF1 Missense_Mutation p.E2629K 0.34 deleterious(0.03) benign(0.283) TCGA-CU-A0YR-01 17 43545795 43545795 G C PLEKHM1 Missense_Mutation p.A363G 0.16 tolerated(0.2) benign(0.103) TCGA-CU-A0YR-01 17 45750422 45750422 A G KPNB1 Missense_Mutation p.Y529C 0.35 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 17 46654171 46654171 C A HOXB4 Missense_Mutation p.L223F 0.35 deleterious(0) probably_damaging(0.997) TCGA-CU-A0YR-01 17 4836215 4836215 C A GP1BA Missense_Mutation p.Q106K 0.36 tolerated(1) possibly_damaging(0.814) TCGA-CU-A0YR-01 17 58145064 58145064 T C HEATR6 Silent p.P323P 0.32 TCGA-CU-A0YR-01 17 71281971 71281971 G A CDC42EP4 Silent p.S223S 0.42 TCGA-CU-A0YR-01 17 7464501 7464501 G A TNFSF12-TNFSF13 3'UTR 0.53 TCGA-CU-A0YR-01 17 8046123 8046123 C T PER1 Missense_Mutation p.A1035T 0.24 tolerated(0.05) probably_damaging(0.989) TCGA-CU-A0YR-01 18 21437864 21437877 GCTTTCCTGAGTGT - LAMA3 Frame_Shift_Del p.F1399Sfs*10 0.45 TCGA-CU-A0YR-01 18 21437915 21437915 G A LAMA3 Missense_Mutation p.G1415E 0.43 benign(0.013) TCGA-CU-A0YR-01 18 48450474 48450480 AAAGCAA - ME2 Frame_Shift_Del p.A356* 0.48 TCGA-CU-A0YR-01 19 10475635 10475635 G A TYK2 Silent p.D367D 0.30 TCGA-CU-A0YR-01 19 10597496 10597496 T C KEAP1 Splice_Site p.X570_splice 0.44 TCGA-CU-A0YR-01 19 18896789 18896789 T A COMP Missense_Mutation p.Q492L 0.51 deleterious(0) probably_damaging(0.99) TCGA-CU-A0YR-01 19 36205902 36205902 A C ZBTB32 Missense_Mutation p.K125T 0.18 deleterious(0.03) benign(0.403) TCGA-CU-A0YR-01 19 37642436 37642436 G A ZNF585A 3'UTR 0.35 TCGA-CU-A0YR-01 19 39329230 39329230 T C HNRNPL Missense_Mutation p.K455R 0.14 tolerated(0.05) possibly_damaging(0.875) TCGA-CU-A0YR-01 19 39909602 39909602 C T PLEKHG2 Missense_Mutation p.R408C 0.31 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-CU-A0YR-01 19 41248527 41248527 G A C19orf54 Silent p.S289S 0.20 TCGA-CU-A0YR-01 19 42260767 42260767 G A CEACAM6 Silent p.L108L 0.30 TCGA-CU-A0YR-01 19 45856352 45856352 C G ERCC2 Missense_Mutation p.G607A 0.27 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 19 46172841 46172841 G A GIPR Silent p.Q21Q 0.33 TCGA-CU-A0YR-01 19 49797169 49797169 G A SLC6A16 Silent p.S511S 0.32 TCGA-CU-A0YR-01 19 50492998 50492998 G A VRK3 Missense_Mutation p.R332C 0.36 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 19 51607330 51607330 T C CTU1 Missense_Mutation p.H166R 0.46 tolerated(0.14) benign(0.006) TCGA-CU-A0YR-01 19 53994029 53994029 T G ZNF813 Silent p.S181S 0.15 TCGA-CU-A0YR-01 19 54971986 54971986 C T LENG8 Silent p.L761L 0.50 TCGA-CU-A0YR-01 19 55021894 55021894 G A LAIR2 3'UTR 0.18 TCGA-CU-A0YR-01 19 5622780 5622780 G C SAFB2 5'UTR 0.27 TCGA-CU-A0YR-01 19 9271246 9271246 G T ZNF317 Missense_Mutation p.D309Y 0.34 deleterious(0.01) probably_damaging(0.917) TCGA-CU-A0YR-01 19 9271247 9271247 A T ZNF317 Missense_Mutation p.D309V 0.34 deleterious(0.05) possibly_damaging(0.782) TCGA-CU-A0YR-01 1 11097837 11097837 A G MASP2 Silent p.P307P 0.15 TCGA-CU-A0YR-01 1 11141199 11141200 - C EXOSC10 Frame_Shift_Ins p.N460Qfs*30 0.18 TCGA-CU-A0YR-01 1 113217556 113217556 C G MOV10 Missense_Mutation p.R8G 0.21 deleterious(0.04) benign(0.137) TCGA-CU-A0YR-01 1 1148065 1148065 T C TNFRSF4 Silent p.P130P 0.47 TCGA-CU-A0YR-01 1 117311413 117311413 A G CD2 3'UTR 0.19 TCGA-CU-A0YR-01 1 12835714 12835714 C T PRAMEF12 Missense_Mutation p.R106W 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-CU-A0YR-01 1 156639511 156639511 T C NES Missense_Mutation p.Q1490R 0.20 tolerated(0.06) benign(0.086) TCGA-CU-A0YR-01 1 1572863 1572863 C A CDK11B Missense_Mutation p.G496C 0.09 unknown(0) TCGA-CU-A0YR-01 1 169578782 169578782 A G SELP Silent p.D431D 0.57 TCGA-CU-A0YR-01 1 172007570 172007570 G A DNM3 Missense_Mutation p.D321N 0.54 deleterious(0) probably_damaging(0.999) TCGA-CU-A0YR-01 1 180843058 180843064 TGCCCCA GGCCCG XPR1 Frame_Shift_Del p.F596Lfs*22 0.42 TCGA-CU-A0YR-01 1 19670914 19670914 T C CAPZB Silent p.K223K 0.20 TCGA-CU-A0YR-01 1 201982385 201982389 AAGAG - ELF3 Frame_Shift_Del p.K255Ifs*44 0.57 TCGA-CU-A0YR-01 1 211529792 211529792 T A TRAF5 Silent p.V120V 0.12 TCGA-CU-A0YR-01 1 40228856 40228856 G A BMP8B Nonsense_Mutation p.Q323* 0.20 TCGA-CU-A0YR-01 1 59787249 59787249 A T FGGY Missense_Mutation p.R10W 0.26 deleterious(0.04) benign(0.003) TCGA-CU-A0YR-01 1 64027423 64027423 T C EFCAB7 Silent p.F464F 0.10 TCGA-CU-A0YR-01 1 7993258 7993258 G A TNFRSF9 Missense_Mutation p.R215W 0.44 tolerated(1) benign(0.001) TCGA-CU-A0YR-01 1 85741980 85741980 T A BCL10 Missense_Mutation p.D19V 0.22 deleterious(0) possibly_damaging(0.637) TCGA-CU-A0YR-01 1 8601355 8601355 A C RERE Missense_Mutation p.F250V 0.47 probably_damaging(0.968) TCGA-CU-A0YR-01 1 871255 871255 G A SAMD11 Missense_Mutation p.E137K 0.49 deleterious_low_confidence(0) benign(0.359) TCGA-CU-A0YR-01 1 97544505 97544505 T C DPYD 3'UTR 0.22 TCGA-CU-A0YR-01 20 18295856 18295856 G T ZNF133 Missense_Mutation p.D120Y 0.30 deleterious(0.04) possibly_damaging(0.718) TCGA-CU-A0YR-01 20 30803206 30803206 T C POFUT1 Silent p.F127F 0.31 TCGA-CU-A0YR-01 20 31962020 31962020 T G CDK5RAP1 Splice_Site p.X370_splice 0.15 TCGA-CU-A0YR-01 20 33680620 33680620 C T TRPC4AP 5'UTR 0.25 TCGA-CU-A0YR-01 20 34214192 34214192 T C CPNE1 Missense_Mutation p.K534E 0.30 tolerated(0.39) benign(0.278) TCGA-CU-A0YR-01 21 45651249 45651249 A C ICOSLG Missense_Mutation p.I259S 0.38 deleterious(0.02) benign(0.075) TCGA-CU-A0YR-01 22 30818522 30818522 T - SEC14L2 3'UTR 0.42 TCGA-CU-A0YR-01 22 39123215 39123215 C T GTPBP1 Intron 0.18 TCGA-CU-A0YR-01 22 41489057 41489057 A G EP300 Missense_Mutation p.K17E 0.37 unknown(0) TCGA-CU-A0YR-01 22 41865168 41865168 A G ACO2 Silent p.L6L 0.17 TCGA-CU-A0YR-01 22 46704392 46704392 C T GTSE1 Missense_Mutation p.A105V 0.17 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 22 51007850 51007850 T A CPT1B Missense_Mutation p.N746Y 0.17 deleterious(0) possibly_damaging(0.897) TCGA-CU-A0YR-01 2 108604766 108604766 T C SLC5A7 Missense_Mutation p.L52S 0.29 deleterious(0.05) benign(0.309) TCGA-CU-A0YR-01 2 159519804 159519804 C T PKP4 Silent p.I808I 0.27 TCGA-CU-A0YR-01 2 168104737 168104737 G A XIRP2 Missense_Mutation p.E2279K 0.28 benign(0.037) TCGA-CU-A0YR-01 2 179616127 179616127 T G TTN Intron 0.32 TCGA-CU-A0YR-01 2 207436497 207436497 C A ADAM23 Missense_Mutation p.A538D 0.11 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 2 240011777 240011777 C T HDAC4 Silent p.S767S 0.18 TCGA-CU-A0YR-01 2 55895071 55895071 T C PNPT1 Silent p.P333P 0.30 TCGA-CU-A0YR-01 2 55895093 55895095 TCT CG PNPT1 Splice_Site p.X326_splice 0.23 TCGA-CU-A0YR-01 2 71795448 71795448 G T DYSF Missense_Mutation p.W948C 0.32 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 3 127294260 127294260 G A TPRA1 Silent p.I253I 0.24 TCGA-CU-A0YR-01 3 130292969 130292969 C A COL6A6 Missense_Mutation p.H1049Q 0.29 tolerated(1) benign(0) TCGA-CU-A0YR-01 3 132247081 132247081 A G DNAJC13 Missense_Mutation p.I2144V 0.29 tolerated(0.33) benign(0) TCGA-CU-A0YR-01 3 170079087 170079087 C T SKIL Missense_Mutation p.A323V 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-CU-A0YR-01 3 40192632 40192632 C T MYRIP Silent p.Y142Y 0.28 TCGA-CU-A0YR-01 3 42577695 42577695 G T VIPR1 Silent p.T432T 0.21 TCGA-CU-A0YR-01 3 4508955 4508955 G C SUMF1 5'UTR 0.22 TCGA-CU-A0YR-01 3 45441734 45441734 T C LARS2 Intron 0.25 TCGA-CU-A0YR-01 3 52440379 52440379 C G BAP1 Missense_Mutation p.D225H 0.53 deleterious(0) probably_damaging(0.992) TCGA-CU-A0YR-01 4 120107259 120107259 T C MYOZ2 Silent p.N233N 0.23 TCGA-CU-A0YR-01 4 120107338 120107338 G C MYOZ2 Missense_Mutation p.E260Q 0.22 deleterious(0) unknown(0) TCGA-CU-A0YR-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.16 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 4 1824768 1824768 C T LETM1 Missense_Mutation p.A475T 0.11 deleterious(0.02) probably_damaging(0.968) TCGA-CU-A0YR-01 4 184114848 184114848 C G WWC2 Missense_Mutation p.I76M 0.29 tolerated(0.39) possibly_damaging(0.86) TCGA-CU-A0YR-01 4 37850207 37850207 G A PGM2 Silent p.E449E 0.41 TCGA-CU-A0YR-01 4 69817427 69817427 C T UGT2A3 Missense_Mutation p.V18I 0.29 tolerated(0.12) benign(0.001) TCGA-CU-A0YR-01 4 69962362 69962362 A G UGT2B7 Missense_Mutation p.I42V 0.30 tolerated(0.12) benign(0.071) TCGA-CU-A0YR-01 4 83347685 83347685 C T HNRNPDL Missense_Mutation p.G375S 0.21 tolerated_low_confidence(0.13) probably_damaging(0.997) TCGA-CU-A0YR-01 5 121362663 121362680 AAGAATCAGTTTAATAAG - SRFBP1 In_Frame_Del p.N379_K384del 0.18 TCGA-CU-A0YR-01 5 134907360 134907360 A G CXCL14 3'UTR 0.31 TCGA-CU-A0YR-01 5 140024591 140024591 C T TMCO6 Nonsense_Mutation p.Q464* 0.40 TCGA-CU-A0YR-01 5 140308488 140308488 T C PCDHAC1 Missense_Mutation p.W671R 0.19 tolerated(0.35) benign(0.005) TCGA-CU-A0YR-01 5 149460456 149460456 A G CSF1R Missense_Mutation p.Y61H 0.22 tolerated(0.55) benign(0) TCGA-CU-A0YR-01 5 150844717 150844717 G A SLC36A1 Missense_Mutation p.A136T 0.27 deleterious(0.03) possibly_damaging(0.49) TCGA-CU-A0YR-01 5 176562709 176562709 G A NSD1 Missense_Mutation p.G202D 0.36 tolerated_low_confidence(0.31) benign(0.016) TCGA-CU-A0YR-01 5 180219243 180219243 G T MGAT1 Missense_Mutation p.D243E 0.05 probably_damaging(0.998) TCGA-CU-A0YR-01 5 180581946 180581946 G C OR2V2 Missense_Mutation p.E2Q 0.40 tolerated(0.06) benign(0.005) TCGA-CU-A0YR-01 5 37183002 37183002 C T C5orf42 Missense_Mutation p.D1761N 0.37 tolerated(0.05) probably_damaging(0.945) TCGA-CU-A0YR-01 5 37293028 37293028 T C NUP155 Silent p.L1330L 0.32 TCGA-CU-A0YR-01 5 54649078 54649078 A T SKIV2L2 Missense_Mutation p.D505V 0.14 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 5 74077398 74077398 C A FAM169A Missense_Mutation p.D634Y 0.21 deleterious(0) probably_damaging(1) TCGA-CU-A0YR-01 5 837498 837498 C T ZDHHC11 Missense_Mutation p.M294I 0.14 tolerated(0.52) benign(0.002) TCGA-CU-A0YR-01 6 100868687 100868687 G T SIM1 Silent p.S382S 0.34 TCGA-CU-A0YR-01 6 100868688 100868688 G C SIM1 Missense_Mutation p.S382C 0.35 tolerated(0.09) possibly_damaging(0.749) TCGA-CU-A0YR-01 6 127912784 127912784 C T C6orf58 3'UTR 0.29 TCGA-CU-A0YR-01 6 129498972 129498972 C - LAMA2 Frame_Shift_Del p.S476Rfs*65 0.21 TCGA-CU-A0YR-01 6 150240778 150240778 C A RAET1G Missense_Mutation p.W87L 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-CU-A0YR-01 6 157521944 157521944 C G ARID1B Missense_Mutation p.Q1406E 0.14 probably_damaging(0.939) TCGA-CU-A0YR-01 6 17539634 17539634 T C CAP2 Silent p.S257S 0.05 TCGA-CU-A0YR-01 6 28474199 28474199 A C GPX6 Missense_Mutation p.N83K 0.14 deleterious(0) probably_damaging(0.997) TCGA-CU-A0YR-01 6 30656436 30656436 C T NRM 3'UTR 0.20 TCGA-CU-A0YR-01 6 32372796 32372796 G A BTNL2 Missense_Mutation p.P116L 0.16 tolerated(0.18) probably_damaging(0.982) TCGA-CU-A0YR-01 6 33284382 33284382 G A ZBTB22 Silent p.A104A 0.20 TCGA-CU-A0YR-01 6 74331540 74331540 A G SLC17A5 Missense_Mutation p.F322S 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-CU-A0YR-01 7 129919307 129919322 TGGAGCCAGCAGCAAC AAG CPA2 Frame_Shift_Del p.G265Sfs*18 0.14 TCGA-CU-A0YR-01 7 139092032 139092032 A T LUC7L2 Missense_Mutation p.D274V 0.18 deleterious(0) probably_damaging(0.998) TCGA-CU-A0YR-01 7 142131871 142131871 G A TRBV5-6 Missense_Mutation p.P3S 0.35 tolerated(1) probably_damaging(0.998) TCGA-CU-A0YR-01 7 22985595 22985595 T C FAM126A Silent p.E393E 0.37 TCGA-CU-A0YR-01 7 42004980 42004980 G T GLI3 Missense_Mutation p.L1231I 0.30 tolerated_low_confidence(0.83) benign(0.001) TCGA-CU-A0YR-01 7 44736651 44736651 G A OGDH Missense_Mutation p.R680Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-CU-A0YR-01 7 48284188 48284188 G A ABCA13 Nonsense_Mutation p.W426* 0.11 TCGA-CU-A0YR-01 7 86556234 86556234 T C KIAA1324L Splice_Site p.X364_splice 0.39 TCGA-CU-A0YR-01 8 116632282 116632282 C T TRPS1 Missense_Mutation p.V15I 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CU-A0YR-01 8 139620181 139620181 G A COL22A1 Missense_Mutation p.P1344S 0.27 unknown(0) TCGA-CU-A0YR-01 8 41794882 41794882 T C KAT6A Missense_Mutation p.R1082G 0.41 benign(0.278) TCGA-CU-A0YR-01 8 54745612 54745612 T A ATP6V1H Missense_Mutation p.I50F 0.51 deleterious(0) benign(0.053) TCGA-CU-A0YR-01 8 57026488 57026488 C T MOS Silent p.S18S 0.28 TCGA-CU-A0YR-01 9 116856478 116856478 T C KIF12 Silent p.L294L 0.17 TCGA-CU-A0YR-01 9 135977871 135977872 - CGCT RALGDS Frame_Shift_Ins p.W668Afs*11 0.50 TCGA-CU-A0YR-01 9 140444633 140444633 T C PNPLA7 Missense_Mutation p.D6G 0.15 tolerated_low_confidence(0.17) benign(0.002) TCGA-CU-A0YR-01 9 19296129 19296129 A G DENND4C Missense_Mutation p.T309A 0.33 tolerated(0.14) benign(0.014) TCGA-CU-A0YR-01 9 2718088 2718088 G A KCNV2 Missense_Mutation p.G117S 0.17 tolerated(0.4) benign(0.001) TCGA-CU-A0YR-01 9 2804299 2804299 A T KIAA0020 3'UTR 0.35 TCGA-CU-A0YR-01 9 6330127 6330127 A C TPD52L3 3'UTR 0.37 TCGA-CU-A0YR-01 9 80262686 80262686 G A GNA14 Silent p.S8S 0.36 TCGA-CU-A0YR-01 9 88257814 88257814 T C AGTPBP1 Silent p.Q370Q 0.19 TCGA-CU-A0YR-01 X 118723319 118723319 T C NKRF Missense_Mutation p.N705S 0.66 tolerated_low_confidence(1) benign(0.04) TCGA-CU-A0YR-01 X 153558141 153558141 A G TKTL1 3'UTR 0.82 TCGA-CU-A0YR-01 X 15574250 15574250 C T BMX Missense_Mutation p.R670W 0.31 deleterious(0.02) possibly_damaging(0.684) TCGA-CU-A0YR-01 X 15599440 15599440 T G ACE2 Missense_Mutation p.Q325P 0.59 tolerated(1) benign(0.004) TCGA-CU-A3KJ-01 10 101503808 101503808 C G CUTC Missense_Mutation p.L140V 0.73 deleterious(0.01) possibly_damaging(0.873) TCGA-CU-A3KJ-01 10 104814125 104814125 G T CNNM2 Missense_Mutation p.R602L 0.36 deleterious(0.05) benign(0.397) TCGA-CU-A3KJ-01 10 118030457 118030457 C G GFRA1 Missense_Mutation p.E71Q 0.39 deleterious(0) possibly_damaging(0.781) TCGA-CU-A3KJ-01 10 126301987 126301987 C T LHPP 3'UTR 0.45 TCGA-CU-A3KJ-01 10 13628983 13628983 G C PRPF18 5'UTR 0.18 TCGA-CU-A3KJ-01 10 17153011 17153011 C T CUBN Missense_Mutation p.E308K 0.15 deleterious(0) probably_damaging(1) TCGA-CU-A3KJ-01 10 18905124 18905124 G A NSUN6 Missense_Mutation p.S137L 0.79 deleterious(0.03) benign(0.24) TCGA-CU-A3KJ-01 10 21102872 21102872 G C NEBL Nonsense_Mutation p.S781* 0.24 TCGA-CU-A3KJ-01 10 43696157 43696157 G A RASGEF1A Silent p.C213C 0.08 TCGA-CU-A3KJ-01 10 44140096 44140096 C G ZNF32 Missense_Mutation p.R75T 0.62 deleterious(0) possibly_damaging(0.749) TCGA-CU-A3KJ-01 10 89504908 89504908 C T PAPSS2 Silent p.L547L 0.78 TCGA-CU-A3KJ-01 10 90695108 90695108 C T ACTA2 Missense_Mutation p.E336K 0.77 deleterious_low_confidence(0.03) benign(0.063) TCGA-CU-A3KJ-01 10 93872 93872 T G TUBB8 Missense_Mutation p.K154Q 0.06 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-CU-A3KJ-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.80 TCGA-CU-A3KJ-01 11 117869673 117869673 G A IL10RA Missense_Mutation p.E352K 0.43 tolerated(0.25) benign(0.025) TCGA-CU-A3KJ-01 11 18503374 18503374 C A TSG101 Nonsense_Mutation p.E296* 0.41 TCGA-CU-A3KJ-01 11 418436 418436 G A ANO9 Missense_Mutation p.R762W 0.34 deleterious_low_confidence(0.02) benign(0.001) TCGA-CU-A3KJ-01 11 43333683 43333683 G A API5 Silent p.P2P 0.52 TCGA-CU-A3KJ-01 11 59630175 59630175 C G TCN1 Missense_Mutation p.E94Q 0.37 tolerated(1) benign(0.026) TCGA-CU-A3KJ-01 11 6220474 6220474 C G OR52W1 Silent p.L7L 0.40 TCGA-CU-A3KJ-01 11 71293346 71293346 G C KRTAP5-11 3'UTR 0.29 TCGA-CU-A3KJ-01 11 71293573 71293573 G C KRTAP5-11 Missense_Mutation p.S104C 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-CU-A3KJ-01 11 862710 862710 C T TSPAN4 Missense_Mutation p.A75V 0.27 deleterious(0) probably_damaging(0.999) TCGA-CU-A3KJ-01 11 88241720 88241720 C G GRM5 3'UTR 0.19 TCGA-CU-A3KJ-01 11 89914805 89914805 G A NAALAD2 Missense_Mutation p.V626M 0.21 deleterious(0.03) probably_damaging(0.98) TCGA-CU-A3KJ-01 11 89924900 89924900 G A NAALAD2 Silent p.L736L 0.28 TCGA-CU-A3KJ-01 12 103352354 103352354 G T ASCL1 Missense_Mutation p.S111I 0.61 deleterious(0.01) benign(0.257) TCGA-CU-A3KJ-01 12 104341191 104341191 G A HSP90B1 Missense_Mutation p.E789K 0.57 tolerated(0.37) unknown(0) TCGA-CU-A3KJ-01 12 133732691 133732691 C T ZNF10 Missense_Mutation p.H287Y 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-CU-A3KJ-01 12 14633975 14633975 C T ATF7IP Nonsense_Mutation p.Q1046* 0.47 TCGA-CU-A3KJ-01 12 42554413 42554413 G A YAF2 Missense_Mutation p.S198L 0.53 tolerated(0.12) probably_damaging(0.981) TCGA-CU-A3KJ-01 12 52865005 52865005 G T KRT6C Missense_Mutation p.L330M 0.40 tolerated(0.08) possibly_damaging(0.842) TCGA-CU-A3KJ-01 12 52865006 52865006 G T KRT6C Missense_Mutation p.D329E 0.39 deleterious(0) probably_damaging(0.963) TCGA-CU-A3KJ-01 12 56718262 56718262 G A PAN2 Missense_Mutation p.R582W 0.67 deleterious(0) probably_damaging(0.997) TCGA-CU-A3KJ-01 12 6954874 6954874 C G GNB3 Missense_Mutation p.S275C 0.38 deleterious(0.02) probably_damaging(0.991) TCGA-CU-A3KJ-01 12 6954996 6954996 C T CDCA3 3'Flank 0.45 TCGA-CU-A3KJ-01 12 6959647 6959647 C T CDCA3 Missense_Mutation p.M78I 0.42 deleterious(0.04) benign(0.36) TCGA-CU-A3KJ-01 12 89743339 89743339 C T DUSP6 Splice_Site p.X280_splice 0.36 TCGA-CU-A3KJ-01 12 96368046 96368046 C T HAL Silent p.K646K 0.22 TCGA-CU-A3KJ-01 13 112722161 112722161 C T SOX1 Silent p.R63R 0.36 TCGA-CU-A3KJ-01 13 39438670 39438670 G A FREM2 Nonsense_Mutation p.W2637* 0.40 TCGA-CU-A3KJ-01 13 41767359 41767359 C A KBTBD7 Missense_Mutation p.M345I 0.48 deleterious(0) probably_damaging(0.993) TCGA-CU-A3KJ-01 13 45973211 45973211 G C SLC25A30 Nonsense_Mutation p.S206* 0.17 TCGA-CU-A3KJ-01 13 47365491 47365491 C T ESD Missense_Mutation p.E20K 0.57 tolerated(0.59) benign(0.002) TCGA-CU-A3KJ-01 13 49762735 49762735 G A FNDC3A Missense_Mutation p.R637Q 0.13 deleterious(0.01) possibly_damaging(0.79) TCGA-CU-A3KJ-01 13 78477333 78477333 T C EDNRB Silent p.R343R 0.43 TCGA-CU-A3KJ-01 14 100758860 100758860 G A SLC25A29 Silent p.G224G 0.24 TCGA-CU-A3KJ-01 14 22134223 22134223 G A OR4E2 Silent p.T309T 0.25 TCGA-CU-A3KJ-01 14 31169416 31169416 G C SCFD1 Missense_Mutation p.M454I 0.35 tolerated(0.08) benign(0.034) TCGA-CU-A3KJ-01 14 52781491 52781491 G A PTGER2 Silent p.V75V 0.21 TCGA-CU-A3KJ-01 14 65260362 65260362 G C SPTB Silent p.L673L 0.32 TCGA-CU-A3KJ-01 14 70530553 70530553 C T SLC8A3 Intron 0.54 TCGA-CU-A3KJ-01 14 77843846 77843846 C T SAMD15 Missense_Mutation p.H29Y 0.42 tolerated(1) benign(0.008) TCGA-CU-A3KJ-01 14 86087957 86087957 C G FLRT2 Silent p.L33L 0.53 TCGA-CU-A3KJ-01 14 86088062 86088062 C G FLRT2 Silent p.L68L 0.56 TCGA-CU-A3KJ-01 14 86088862 86088862 G T FLRT2 Missense_Mutation p.R335L 0.47 deleterious(0) possibly_damaging(0.788) TCGA-CU-A3KJ-01 14 90650720 90650720 C G KCNK13 Missense_Mutation p.I200M 0.16 deleterious(0) probably_damaging(0.994) TCGA-CU-A3KJ-01 14 90650738 90650738 C T KCNK13 Silent p.I206I 0.18 TCGA-CU-A3KJ-01 14 90650948 90650948 C G KCNK13 Missense_Mutation p.F276L 0.24 tolerated(0.14) possibly_damaging(0.631) TCGA-CU-A3KJ-01 14 90650969 90650969 C G KCNK13 Missense_Mutation p.I283M 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-CU-A3KJ-01 14 93299516 93299516 G A GOLGA5 Missense_Mutation p.R590Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-CU-A3KJ-01 15 22955190 22955190 C A CYFIP1 Missense_Mutation p.F528L 0.41 tolerated(0.73) benign(0.016) TCGA-CU-A3KJ-01 15 25438416 25438416 G C SNORD115-11 3'Flank 0.22 TCGA-CU-A3KJ-01 15 33928729 33928729 C T RYR3 Silent p.F1178F 0.16 TCGA-CU-A3KJ-01 15 33936718 33936718 G C RYR3 Missense_Mutation p.E1255Q 0.27 benign(0.002) TCGA-CU-A3KJ-01 15 34151822 34151822 T G RYR3 Missense_Mutation p.I4730S 0.20 probably_damaging(0.978) TCGA-CU-A3KJ-01 15 40913375 40913375 G A CASC5 Missense_Mutation p.E331K 0.26 tolerated(0.11) possibly_damaging(0.456) TCGA-CU-A3KJ-01 15 41365655 41365655 C T INO80 Missense_Mutation p.E456K 0.12 tolerated(0.33) benign(0.004) TCGA-CU-A3KJ-01 15 44149340 44149340 A G WDR76 Missense_Mutation p.Y463C 0.44 deleterious(0) benign(0.064) TCGA-CU-A3KJ-01 15 45389939 45389939 C T DUOX2 Missense_Mutation p.G1189D 0.22 deleterious(0.01) probably_damaging(1) TCGA-CU-A3KJ-01 15 65157389 65157389 G C PLEKHO2 Missense_Mutation p.E259Q 0.43 tolerated(0.54) benign(0.101) TCGA-CU-A3KJ-01 15 65157595 65157595 G C PLEKHO2 Missense_Mutation p.E327D 0.29 tolerated(1) benign(0.064) TCGA-CU-A3KJ-01 15 65157914 65157914 G A PLEKHO2 Missense_Mutation p.E434K 0.56 deleterious(0.02) benign(0.016) TCGA-CU-A3KJ-01 15 65360144 65360144 C G RASL12 Silent p.A10A 0.39 TCGA-CU-A3KJ-01 15 73007669 73007669 C G BBS4 Silent p.S86S 0.32 TCGA-CU-A3KJ-01 15 79284109 79284109 C G RASGRF1 Missense_Mutation p.E1035Q 0.25 deleterious(0.01) benign(0.379) TCGA-CU-A3KJ-01 15 79284125 79284125 C T RASGRF1 Silent p.V1029V 0.20 TCGA-CU-A3KJ-01 15 79284133 79284133 C T RASGRF1 Missense_Mutation p.E1027K 0.16 tolerated(0.41) benign(0.009) TCGA-CU-A3KJ-01 15 83218237 83218237 C G CPEB1 Missense_Mutation p.D458H 0.29 deleterious(0) probably_damaging(1) TCGA-CU-A3KJ-01 16 1413046 1413046 C T GNPTG Missense_Mutation p.S291F 0.34 tolerated_low_confidence(0.06) benign(0.093) TCGA-CU-A3KJ-01 16 15198613 15198613 G C RP11-1186N24.5 Intron 0.17 TCGA-CU-A3KJ-01 16 2024268 2024268 G A TBL3 Missense_Mutation p.G55E 0.30 deleterious(0) probably_damaging(1) TCGA-CU-A3KJ-01 16 20999096 20999096 C T DNAH3 Silent p.S2267S 0.74 TCGA-CU-A3KJ-01 16 22291646 22291646 G A EEF2K Missense_Mutation p.E673K 0.58 deleterious(0.03) benign(0.139) TCGA-CU-A3KJ-01 16 27078256 27078256 A T C16orf82 RNA 0.43 TCGA-CU-A3KJ-01 16 29367202 29367202 G A SNX29P2 RNA 0.25 TCGA-CU-A3KJ-01 16 29824403 29824403 G C PRRT2 Missense_Mutation p.E10Q 0.23 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-CU-A3KJ-01 16 53967927 53967927 G C FTO Missense_Mutation p.E424Q 0.33 deleterious(0.05) probably_damaging(0.926) TCGA-CU-A3KJ-01 16 57714456 57714456 C A GPR97 Missense_Mutation p.R270S 0.26 tolerated(0.3) possibly_damaging(0.747) TCGA-CU-A3KJ-01 16 67331452 67331452 C T KCTD19 Silent p.L367L 0.35 TCGA-CU-A3KJ-01 16 67685194 67685194 C T RLTPR Silent p.I763I 0.33 TCGA-CU-A3KJ-01 17 15995135 15995135 C T NCOR1 Intron 0.25 TCGA-CU-A3KJ-01 17 21207742 21207742 G A MAP2K3 Silent p.V191V 0.26 TCGA-CU-A3KJ-01 17 25932610 25932610 G C KSR1 Missense_Mutation p.E474Q 0.23 tolerated(0.05) benign(0.433) TCGA-CU-A3KJ-01 17 27909075 27909075 C T GIT1 Missense_Mutation p.E165K 0.55 deleterious(0) possibly_damaging(0.589) TCGA-CU-A3KJ-01 17 35549207 35549207 G C ACACA Missense_Mutation p.L1414V 0.31 deleterious(0) probably_damaging(0.995) TCGA-CU-A3KJ-01 17 43213457 43213457 G A ACBD4 Intron 0.14 TCGA-CU-A3KJ-01 17 5086617 5086617 T C ZNF594 Missense_Mutation p.E312G 0.44 tolerated(0.36) possibly_damaging(0.783) TCGA-CU-A3KJ-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.75 deleterious(0) possibly_damaging(0.9) TCGA-CU-A3KJ-01 17 76201688 76201688 G T AFMID Missense_Mutation p.D217Y 0.21 deleterious(0.05) probably_damaging(0.986) TCGA-CU-A3KJ-01 17 76454708 76454708 C G DNAH17 Missense_Mutation p.E3292Q 0.26 possibly_damaging(0.611) TCGA-CU-A3KJ-01 17 77043906 77043906 C T C1QTNF1 Silent p.F194F 0.53 TCGA-CU-A3KJ-01 17 78293102 78293102 C G RNF213 Nonsense_Mutation p.S1005* 0.57 TCGA-CU-A3KJ-01 17 8248778 8248778 T C ODF4 Missense_Mutation p.I191T 0.72 tolerated(0.08) benign(0.012) TCGA-CU-A3KJ-01 18 11868562 11868562 G A GNAL Missense_Mutation p.V311I 0.31 deleterious(0.02) benign(0.435) TCGA-CU-A3KJ-01 18 28926024 28926024 G C DSG1 Missense_Mutation p.E655Q 0.20 tolerated(0.34) probably_damaging(0.932) TCGA-CU-A3KJ-01 18 59925298 59925298 G C KIAA1468 Missense_Mutation p.D672H 0.21 deleterious(0) probably_damaging(0.991) TCGA-CU-A3KJ-01 18 63511079 63511079 C T CDH7 Missense_Mutation p.T338M 0.26 deleterious(0.03) benign(0.344) TCGA-CU-A3KJ-01 18 8088834 8088834 G C PTPRM Missense_Mutation p.R614T 0.68 deleterious(0) possibly_damaging(0.856) TCGA-CU-A3KJ-01 19 10073543 10073543 G A COL5A3 Silent p.S1601S 0.39 TCGA-CU-A3KJ-01 19 11136115 11136115 G C SMARCA4 Missense_Mutation p.K1033N 0.20 probably_damaging(0.96) TCGA-CU-A3KJ-01 19 11473280 11473288 GCGTGGTCC - DKFZP761J1410 In_Frame_Del p.V229_V231del 0.19 TCGA-CU-A3KJ-01 19 14076445 14076445 G A RFX1 Silent p.P702P 0.22 TCGA-CU-A3KJ-01 19 17948866 17948866 T C JAK3 Missense_Mutation p.N526D 0.28 tolerated(0.34) probably_damaging(0.969) TCGA-CU-A3KJ-01 19 19369602 19369602 G T HAPLN4 Missense_Mutation p.R183S 0.40 deleterious(0.02) benign(0.31) TCGA-CU-A3KJ-01 19 23991571 23991571 G A RPSAP58 5'UTR 0.17 TCGA-CU-A3KJ-01 19 2438516 2438516 C T LMNB2 Missense_Mutation p.E139K 0.61 deleterious(0.01) benign(0.341) TCGA-CU-A3KJ-01 19 31048184 31048184 T C ZNF536 3'UTR 0.23 TCGA-CU-A3KJ-01 19 32930745 32930745 C G DPY19L3 Missense_Mutation p.Q262E 0.46 deleterious(0.01) probably_damaging(0.969) TCGA-CU-A3KJ-01 19 36370075 36370075 C A APLP1 Missense_Mutation p.R605S 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-CU-A3KJ-01 19 42880156 42880156 C T MEGF8 Silent p.V2522V 0.36 TCGA-CU-A3KJ-01 19 44530214 44530214 T G ZNF222 Intron 0.39 TCGA-CU-A3KJ-01 19 46308019 46308019 C G RSPH6A Missense_Mutation p.E382Q 0.35 deleterious(0.03) possibly_damaging(0.895) TCGA-CU-A3KJ-01 19 49134232 49134232 C G DBP Missense_Mutation p.E280D 0.41 deleterious(0) probably_damaging(1) TCGA-CU-A3KJ-01 19 49224075 49224075 G C RASIP1 Missense_Mutation p.P958A 0.38 tolerated_low_confidence(0.11) possibly_damaging(0.681) TCGA-CU-A3KJ-01 19 50302947 50302947 G A AP2A1 Missense_Mutation p.R399Q 0.38 tolerated(0.28) benign(0.049) TCGA-CU-A3KJ-01 19 5214591 5214591 C T PTPRS Missense_Mutation p.R1492Q 0.23 deleterious(0) possibly_damaging(0.716) TCGA-CU-A3KJ-01 19 54932494 54932494 G A TTYH1 Missense_Mutation p.D117N 0.17 deleterious(0) probably_damaging(0.994) TCGA-CU-A3KJ-01 19 58058953 58058953 C T ZNF550 Missense_Mutation p.R179Q 0.38 tolerated(0.41) benign(0.027) TCGA-CU-A3KJ-01 19 58846394 58846394 C G ZSCAN22 Missense_Mutation p.Q76E 0.07 deleterious(0.04) benign(0.303) TCGA-CU-A3KJ-01 19 7625568 7625568 G A PNPLA6 Missense_Mutation p.G1255E 0.55 tolerated(0.45) benign(0.004) TCGA-CU-A3KJ-01 1 104116527 104116527 C T AMY2B Silent p.F237F 0.39 TCGA-CU-A3KJ-01 1 12202457 12202457 G C TNFRSF8 Missense_Mutation p.E553Q 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-CU-A3KJ-01 1 155294618 155294618 C G RUSC1 Intron 0.18 TCGA-CU-A3KJ-01 1 155989830 155989830 C T SSR2 Silent p.Q43Q 0.11 TCGA-CU-A3KJ-01 1 158059548 158059548 G C KIRREL Silent p.V404V 0.15 TCGA-CU-A3KJ-01 1 16199610 16199610 G A SPEN Missense_Mutation p.R128H 0.33 probably_damaging(0.996) TCGA-CU-A3KJ-01 1 162750019 162750019 C A DDR2 Missense_Mutation p.Q851K 0.11 deleterious(0.01) benign(0.013) TCGA-CU-A3KJ-01 1 167792259 167792259 G T ADCY10 Silent p.I1385I 0.30 TCGA-CU-A3KJ-01 1 168066120 168066120 G C GPR161 Missense_Mutation p.S262C 0.46 deleterious(0) probably_damaging(0.996) TCGA-CU-A3KJ-01 1 176050418 176050418 T C RFWD2 Missense_Mutation p.S383G 0.24 tolerated(0.28) benign(0.001) TCGA-CU-A3KJ-01 1 180904553 180904553 G A KIAA1614 Missense_Mutation p.R503Q 0.16 tolerated(0.5) benign(0.016) TCGA-CU-A3KJ-01 1 183208644 183208644 G C LAMC2 Missense_Mutation p.Q1005H 0.26 tolerated(0.06) benign(0.009) TCGA-CU-A3KJ-01 1 183209259 183209259 G C LAMC2 Missense_Mutation p.E1052Q 0.19 tolerated(0.71) benign(0.081) TCGA-CU-A3KJ-01 1 201749566 201749566 C A NAV1 Missense_Mutation p.S415Y 0.25 deleterious(0) probably_damaging(0.994) TCGA-CU-A3KJ-01 1 201749603 201749603 C G NAV1 Silent p.L427L 0.29 TCGA-CU-A3KJ-01 1 201749677 201749677 C T NAV1 Missense_Mutation p.S452L 0.24 tolerated(0.18) possibly_damaging(0.689) TCGA-CU-A3KJ-01 1 203276381 203276382 AG - BTG2 Frame_Shift_Del p.S98Rfs*10 0.20 TCGA-CU-A3KJ-01 1 211751465 211751465 G A SLC30A1 Missense_Mutation p.R164C 0.15 deleterious(0.05) possibly_damaging(0.873) TCGA-CU-A3KJ-01 1 215259881 215259881 C G KCNK2 Missense_Mutation p.L73V 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-CU-A3KJ-01 1 225598067 225598067 C T LBR Missense_Mutation p.A414T 0.19 tolerated(0.55) benign(0.017) TCGA-CU-A3KJ-01 1 235973651 235973651 C G LYST Missense_Mutation p.R156T 0.42 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-CU-A3KJ-01 1 238090509 238090509 T C RP11-193H5.1 RNA 0.22 TCGA-CU-A3KJ-01 1 240255687 240255687 C T FMN2 Missense_Mutation p.S93F 0.23 unknown(0) TCGA-CU-A3KJ-01 1 240255999 240255999 C G FMN2 Nonsense_Mutation p.S197* 0.15 TCGA-CU-A3KJ-01 1 24706145 24706145 T A STPG1 Missense_Mutation p.N154Y 0.15 deleterious(0.04) possibly_damaging(0.643) TCGA-CU-A3KJ-01 1 27059204 27059204 C T ARID1A Missense_Mutation p.S614L 0.36 benign(0.307) TCGA-CU-A3KJ-01 1 31478699 31478699 C T PUM1 Splice_Site p.X240_splice 0.58 TCGA-CU-A3KJ-01 1 3644231 3644231 C T TP73 Silent p.I294I 0.27 TCGA-CU-A3KJ-01 1 44878109 44878109 C G RNF220 Missense_Mutation p.H114D 0.57 tolerated(0.12) probably_damaging(0.991) TCGA-CU-A3KJ-01 1 47767334 47767334 G A STIL Missense_Mutation p.L118F 0.45 deleterious(0) probably_damaging(1) TCGA-CU-A3KJ-01 1 62330234 62330234 C G INADL Missense_Mutation p.Q922E 0.51 tolerated(0.38) benign(0.002) TCGA-CU-A3KJ-01 1 76280741 76280741 C A MSH4 Missense_Mutation p.F245L 0.18 deleterious(0) probably_damaging(0.989) TCGA-CU-A3KJ-01 1 78031766 78031766 C G ZZZ3 Missense_Mutation p.C856S 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-CU-A3KJ-01 1 79107468 79107468 G A IFI44L Missense_Mutation p.E445K 0.27 tolerated(0.87) benign(0) TCGA-CU-A3KJ-01 1 89521722 89521722 C T GBP1 Missense_Mutation p.E449K 0.13 tolerated(0.08) benign(0.004) TCGA-CU-A3KJ-01 1 89522638 89522638 C G GBP1 Missense_Mutation p.E352Q 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-CU-A3KJ-01 1 909268 909268 C T PLEKHN1 Missense_Mutation p.S497L 0.29 tolerated(0.35) benign(0.003) TCGA-CU-A3KJ-01 20 36718323 36718323 G C RPRD1B 3'UTR 0.49 TCGA-CU-A3KJ-01 20 42088479 42088479 G C SRSF6 Missense_Mutation p.E109Q 0.40 deleterious(0.03) possibly_damaging(0.688) TCGA-CU-A3KJ-01 20 42825950 42825950 C T OSER1 Silent p.K207K 0.30 TCGA-CU-A3KJ-01 20 50139887 50139887 G C NFATC2 Missense_Mutation p.A298G 0.40 tolerated(0.38) benign(0.04) TCGA-CU-A3KJ-01 20 62871220 62871220 C T MYT1 Silent p.L1067L 0.13 TCGA-CU-A3KJ-01 21 10862967 10862967 C A IGHV1OR21-1 Missense_Mutation p.T88N 0.14 deleterious(0.02) benign(0.212) TCGA-CU-A3KJ-01 21 10862968 10862968 C A IGHV1OR21-1 Silent p.T88T 0.14 TCGA-CU-A3KJ-01 21 17250767 17250767 C T USP25 Silent p.L1047L 0.46 TCGA-CU-A3KJ-01 21 34932240 34932240 C T SON Intron 0.17 TCGA-CU-A3KJ-01 21 43802184 43802184 G C TMPRSS3 Silent p.L314L 0.43 TCGA-CU-A3KJ-01 21 45550606 45550606 C G PWP2 Missense_Mutation p.L905V 0.46 tolerated(0.36) benign(0.142) TCGA-CU-A3KJ-01 21 46363637 46363637 C A FAM207A Silent p.T56T 0.28 TCGA-CU-A3KJ-01 21 47786794 47786794 G C PCNT Missense_Mutation p.D969H 0.24 probably_damaging(0.953) TCGA-CU-A3KJ-01 22 29106036 29106036 G A CHEK2 Silent p.L311L 0.60 TCGA-CU-A3KJ-01 22 38052039 38052039 G C SH3BP1 3'UTR 0.75 TCGA-CU-A3KJ-01 22 38266268 38266268 G A EIF3L Nonsense_Mutation p.W222* 0.41 TCGA-CU-A3KJ-01 22 41572404 41572404 C T EP300 Nonsense_Mutation p.R1645* 0.71 TCGA-CU-A3KJ-01 22 41572932 41572932 C G EP300 Missense_Mutation p.I1739M 0.70 probably_damaging(0.99) TCGA-CU-A3KJ-01 22 41573079 41573079 C G EP300 Silent p.L1788L 0.68 TCGA-CU-A3KJ-01 22 41573719 41573719 C G EP300 Missense_Mutation p.Q2002E 0.69 possibly_damaging(0.848) TCGA-CU-A3KJ-01 22 41573838 41573838 C G EP300 Silent p.L2041L 0.64 TCGA-CU-A3KJ-01 22 41573889 41573889 C G EP300 Silent p.L2058L 0.66 TCGA-CU-A3KJ-01 22 42112115 42112115 T C MEI1 Missense_Mutation p.I165T 0.26 deleterious(0.02) benign(0.133) TCGA-CU-A3KJ-01 2 11964910 11964910 C T LPIN1 Missense_Mutation p.S974L 0.28 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-CU-A3KJ-01 2 125261952 125261952 C T CNTNAP5 Silent p.P381P 0.61 TCGA-CU-A3KJ-01 2 12880633 12880633 G A TRIB2 Missense_Mutation p.V249M 0.60 deleterious(0) probably_damaging(0.977) TCGA-CU-A3KJ-01 2 137928489 137928489 C T THSD7B Silent p.A568A 0.52 TCGA-CU-A3KJ-01 2 150071149 150071149 G A LYPD6B Silent p.Q183Q 0.29 TCGA-CU-A3KJ-01 2 170361106 170361106 G C BBS5 3'UTR 0.47 TCGA-CU-A3KJ-01 2 179610636 179610636 C G TTN Intron 0.29 TCGA-CU-A3KJ-01 2 187627410 187627410 G A FAM171B Missense_Mutation p.G781R 0.14 tolerated(0.66) benign(0.015) TCGA-CU-A3KJ-01 2 202400897 202400897 C T ALS2CR11 Silent p.Q451Q 0.11 TCGA-CU-A3KJ-01 2 206882469 206882469 A C INO80D Missense_Mutation p.C493G 0.39 deleterious(0) probably_damaging(0.999) TCGA-CU-A3KJ-01 2 207634869 207634869 G C FASTKD2 Missense_Mutation p.E278Q 0.12 tolerated(0.28) benign(0.037) TCGA-CU-A3KJ-01 2 21224807 21224807 C G APOB Missense_Mutation p.R4496T 0.21 benign(0.008) TCGA-CU-A3KJ-01 2 218700908 218700908 C T TNS1 Missense_Mutation p.A887T 0.11 tolerated(0.21) benign(0.002) TCGA-CU-A3KJ-01 2 235943684 235943684 G A SH3BP4 Missense_Mutation p.G13D 0.14 tolerated_low_confidence(0.44) benign(0.015) TCGA-CU-A3KJ-01 2 27800241 27800241 G A C2orf16 Missense_Mutation p.E268K 0.43 tolerated(0.11) possibly_damaging(0.58) TCGA-CU-A3KJ-01 2 43991401 43991401 T C PLEKHH2 Missense_Mutation p.M1398T 0.44 tolerated(0.23) benign(0.001) TCGA-CU-A3KJ-01 2 46770291 46770291 G A RHOQ Missense_Mutation p.E36K 0.22 tolerated(0.23) benign(0.005) TCGA-CU-A3KJ-01 2 50733744 50733744 C G NRXN1 Missense_Mutation p.E836Q 0.29 deleterious(0) probably_damaging(0.985) TCGA-CU-A3KJ-01 2 61333734 61333734 A G KIAA1841 Missense_Mutation p.I516M 0.28 tolerated(0.25) benign(0.001) TCGA-CU-A3KJ-01 2 69002212 69002212 C G ARHGAP25 Intron 0.44 TCGA-CU-A3KJ-01 2 71187068 71187068 G A ATP6V1B1 Splice_Site p.X149_splice 0.22 TCGA-CU-A3KJ-01 3 107520009 107520009 A G BBX Silent p.K873K 0.57 TCGA-CU-A3KJ-01 3 128356705 128356705 G A RPN1 Silent p.N190N 0.21 TCGA-CU-A3KJ-01 3 141462354 141462354 C T RNF7 Missense_Mutation p.A60V 0.28 tolerated(0.16) benign(0.038) TCGA-CU-A3KJ-01 3 168802678 168802678 C G MECOM 3'UTR 0.15 TCGA-CU-A3KJ-01 3 185155308 185155308 C T MAP3K13 Silent p.F183F 0.34 TCGA-CU-A3KJ-01 3 186006603 186006603 G A DGKG Missense_Mutation p.P147L 0.24 tolerated(0.15) benign(0.002) TCGA-CU-A3KJ-01 3 193384092 193384092 G C OPA1 Missense_Mutation p.C911S 0.26 deleterious(0) probably_damaging(0.994) TCGA-CU-A3KJ-01 3 196613169 196613169 C T SENP5 Missense_Mutation p.H373Y 0.15 deleterious(0.01) benign(0.328) TCGA-CU-A3KJ-01 3 196792639 196792639 C G DLG1 Missense_Mutation p.D747H 0.24 deleterious(0) probably_damaging(1) TCGA-CU-A3KJ-01 3 4711438 4711438 G A ITPR1 Missense_Mutation p.D648N 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-CU-A3KJ-01 3 4711446 4711446 G A ITPR1 Silent p.L650L 0.26 TCGA-CU-A3KJ-01 3 52245397 52245397 C G ALAS1 Missense_Mutation p.L477V 0.67 deleterious(0.01) probably_damaging(0.999) TCGA-CU-A3KJ-01 3 68802156 68802156 G C FAM19A4 Missense_Mutation p.I48M 0.70 deleterious(0.01) benign(0.221) TCGA-CU-A3KJ-01 3 86010686 86010686 G C CADM2 Missense_Mutation p.G280R 0.24 deleterious(0) possibly_damaging(0.771) TCGA-CU-A3KJ-01 3 93802971 93802971 C G NSUN3 Nonsense_Mutation p.S48* 0.47 TCGA-CU-A3KJ-01 4 119158371 119158371 A G NDST3 Missense_Mutation p.Y705C 0.20 deleterious(0) probably_damaging(0.99) TCGA-CU-A3KJ-01 4 124177235 124177235 G A SPATA5 Missense_Mutation p.R802K 0.74 deleterious(0) probably_damaging(0.995) TCGA-CU-A3KJ-01 4 140299981 140299981 G A NAA15 Missense_Mutation p.E710K 0.59 tolerated(0.45) benign(0.184) TCGA-CU-A3KJ-01 4 175896737 175896737 C A ADAM29 Missense_Mutation p.Q21K 0.20 tolerated(0.06) benign(0.046) TCGA-CU-A3KJ-01 4 183245337 183245337 C T TENM3 Missense_Mutation p.S55L 0.24 tolerated_low_confidence(0.2) possibly_damaging(0.651) TCGA-CU-A3KJ-01 4 436766 436766 C A ZNF721 Missense_Mutation p.G497V 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-CU-A3KJ-01 4 56475309 56475309 A G NMU Missense_Mutation p.M86T 0.65 tolerated(0.07) benign(0.005) TCGA-CU-A3KJ-01 4 56734667 56734667 G C EXOC1 Missense_Mutation p.R194T 0.14 deleterious(0.02) benign(0.155) TCGA-CU-A3KJ-01 4 70071201 70071201 G C UGT2B11 Missense_Mutation p.L363V 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-CU-A3KJ-01 4 88052994 88052994 G C AFF1 Missense_Mutation p.E1051Q 0.15 deleterious(0.02) unknown(0) TCGA-CU-A3KJ-01 5 140431442 140431442 T C PCDHB1 Silent p.N129N 0.41 TCGA-CU-A3KJ-01 5 140794089 140794089 C T PCDHGA10 Silent p.I449I 0.19 TCGA-CU-A3KJ-01 5 140798381 140798381 A T PCDHGB7 Missense_Mutation p.I319L 0.88 tolerated(0.1) benign(0.1) TCGA-CU-A3KJ-01 5 141233836 141233836 C T PCDH1 Missense_Mutation p.G1162E 0.30 tolerated(0.09) benign(0.006) TCGA-CU-A3KJ-01 5 141244913 141244913 C T PCDH1 Missense_Mutation p.R328H 0.50 deleterious(0) probably_damaging(0.966) TCGA-CU-A3KJ-01 5 145894746 145894746 C T GPR151 Missense_Mutation p.E311K 0.40 deleterious(0) possibly_damaging(0.791) TCGA-CU-A3KJ-01 5 159831861 159831861 C T SLU7 Silent p.E473E 0.48 TCGA-CU-A3KJ-01 5 37292081 37292081 G C NUP155 Missense_Mutation p.S1366C 0.27 tolerated(0.09) benign(0.214) TCGA-CU-A3KJ-01 5 71494257 71494257 C G MAP1B Missense_Mutation p.S1692C 0.65 probably_damaging(0.995) TCGA-CU-A3KJ-01 5 72189254 72189254 G A TNPO1 Missense_Mutation p.M649I 0.13 tolerated(0.22) benign(0.005) TCGA-CU-A3KJ-01 5 79026793 79026793 G A CMYA5 Silent p.E735E 0.22 TCGA-CU-A3KJ-01 5 90078972 90078972 A G GPR98 Silent p.P4421P 0.20 TCGA-CU-A3KJ-01 5 9190395 9190395 G T SEMA5A Silent p.I419I 0.18 TCGA-CU-A3KJ-01 5 96090429 96090429 G A CAST Missense_Mutation p.R524K 0.19 deleterious(0.04) probably_damaging(0.995) TCGA-CU-A3KJ-01 6 118028140 118028140 C T NUS1 Missense_Mutation p.R282C 0.41 tolerated(0.29) benign(0.001) TCGA-CU-A3KJ-01 6 128312003 128312003 C G PTPRK Missense_Mutation p.D1009H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-CU-A3KJ-01 6 152462392 152462392 C G SYNE1 Missense_Mutation p.E8398Q 0.79 probably_damaging(0.914) TCGA-CU-A3KJ-01 6 152690184 152690184 G C SYNE1 Missense_Mutation p.Q3244E 0.20 benign(0.243) TCGA-CU-A3KJ-01 6 24416692 24416692 G C MRS2 Missense_Mutation p.E263Q 0.85 deleterious(0.01) possibly_damaging(0.877) TCGA-CU-A3KJ-01 6 35928812 35928812 G C SLC26A8 Nonsense_Mutation p.S509* 0.23 TCGA-CU-A3KJ-01 6 43273792 43273792 T C CRIP3 Intron 0.84 TCGA-CU-A3KJ-01 6 45922939 45922939 G A CLIC5 Nonsense_Mutation p.Q195* 0.55 TCGA-CU-A3KJ-01 6 73843246 73843246 C T KCNQ5 Silent p.T469T 0.42 TCGA-CU-A3KJ-01 6 96054015 96054015 A G MANEA Missense_Mutation p.N375D 0.55 tolerated(0.09) probably_damaging(0.999) TCGA-CU-A3KJ-01 7 100483362 100483362 C G SRRT Nonsense_Mutation p.S453* 0.19 TCGA-CU-A3KJ-01 7 10979723 10979723 G A NDUFA4 5'UTR 0.47 TCGA-CU-A3KJ-01 7 126698169 126698169 C T GRM8 Intron 0.40 TCGA-CU-A3KJ-01 7 127670203 127670203 G C LRRC4 Missense_Mutation p.S164C 0.18 deleterious(0.01) benign(0.153) TCGA-CU-A3KJ-01 7 143039166 143039166 C G CLCN1 Missense_Mutation p.S576C 0.43 deleterious(0) probably_damaging(0.999) TCGA-CU-A3KJ-01 7 143657918 143657918 G A OR2F1 Silent p.L285L 0.36 TCGA-CU-A3KJ-01 7 148801778 148801778 G A ZNF425 Silent p.F395F 0.37 TCGA-CU-A3KJ-01 7 1523488 1523488 G A INTS1 Missense_Mutation p.S1144L 0.17 deleterious(0.01) benign(0.093) TCGA-CU-A3KJ-01 7 24749946 24749946 G C DFNA5 Silent p.V253V 0.17 TCGA-CU-A3KJ-01 7 3998602 3998602 C T SDK1 Missense_Mutation p.S397L 0.19 tolerated(1) benign(0.001) TCGA-CU-A3KJ-01 7 40174619 40174619 G C SUGCT Silent p.A7A 0.28 TCGA-CU-A3KJ-01 7 43916935 43916935 G C URGCP Silent p.L709L 0.19 TCGA-CU-A3KJ-01 7 48080989 48080989 G A C7orf57 Silent p.A38A 0.43 TCGA-CU-A3KJ-01 7 65154292 65154292 C T INTS4L2 RNA 0.23 TCGA-CU-A3KJ-01 7 6629998 6629998 C T C7orf26 Silent p.F28F 0.36 TCGA-CU-A3KJ-01 7 66418353 66418353 G A TMEM248 Silent p.E307E 0.15 TCGA-CU-A3KJ-01 7 7278084 7278084 G C C1GALT1 Missense_Mutation p.R140T 0.25 deleterious(0) probably_damaging(0.986) TCGA-CU-A3KJ-01 7 75190679 75190679 C G HIP1 Missense_Mutation p.R382T 0.36 deleterious(0.02) benign(0.401) TCGA-CU-A3KJ-01 7 76112191 76112191 G T DTX2 Missense_Mutation p.G212V 0.11 tolerated(0.08) possibly_damaging(0.493) TCGA-CU-A3KJ-01 7 76610304 76610304 G T UPK3B Intron 0.36 TCGA-CU-A3KJ-01 7 90895017 90895017 C T FZD1 Silent p.F274F 0.58 TCGA-CU-A3KJ-01 7 99686983 99686983 C G COPS6 Silent p.L49L 0.42 TCGA-CU-A3KJ-01 8 110984713 110984713 C T KCNV1 Silent p.G255G 0.17 TCGA-CU-A3KJ-01 8 11708405 11708405 G C CTSB Missense_Mutation p.I99M 0.43 deleterious(0) probably_damaging(0.996) TCGA-CU-A3KJ-01 8 121644785 121644785 C A SNTB1 Missense_Mutation p.D299Y 0.27 deleterious(0.01) benign(0.078) TCGA-CU-A3KJ-01 8 124238796 124238796 C T C8orf76 Missense_Mutation p.E298K 0.13 tolerated(0.08) possibly_damaging(0.623) TCGA-CU-A3KJ-01 8 142490007 142490007 C T MROH5 Intron 0.19 TCGA-CU-A3KJ-01 8 142490016 142490016 C G MROH5 3'UTR 0.21 TCGA-CU-A3KJ-01 8 145066426 145066426 C T GRINA Missense_Mutation p.A236V 0.12 tolerated(0.15) benign(0.017) TCGA-CU-A3KJ-01 8 145535421 145535421 C T HSF1 Silent p.Y253Y 0.24 TCGA-CU-A3KJ-01 8 17089909 17089909 G T CNOT7 Intron 0.37 TCGA-CU-A3KJ-01 8 23082521 23082521 C G TNFRSF10A Silent p.P18P 0.51 TCGA-CU-A3KJ-01 8 41583422 41583422 C T ANK1 Missense_Mutation p.E190K 0.59 deleterious(0.03) probably_damaging(0.999) TCGA-CU-A3KJ-01 8 75737599 75737599 G A PI15 Missense_Mutation p.D39N 0.50 tolerated(0.48) benign(0.001) TCGA-CU-A3KJ-01 8 80549051 80549051 A G STMN2 Missense_Mutation p.M12V 0.29 deleterious(0.04) probably_damaging(0.961) TCGA-CU-A3KJ-01 9 107267429 107267429 G C OR13F1 Missense_Mutation p.E296Q 0.81 deleterious(0) possibly_damaging(0.587) TCGA-CU-A3KJ-01 9 111693469 111693469 G A IKBKAP 5'UTR 0.73 TCGA-CU-A3KJ-01 9 131745215 131745215 C T NUP188 Silent p.I568I 0.43 TCGA-CU-A3KJ-01 9 132889830 132889830 G A GPR107 Nonsense_Mutation p.W523* 0.67 TCGA-CU-A3KJ-01 9 339064 339064 C T DOCK8 Missense_Mutation p.S494L 0.18 deleterious(0) benign(0.133) TCGA-CU-A3KJ-01 X 22291896 22291896 G A ZNF645 Missense_Mutation p.C263Y 0.42 tolerated(1) benign(0) TCGA-CU-A3KJ-01 X 44949017 44949017 G A KDM6A Nonsense_Mutation p.W1193* 0.83 TCGA-CU-A3KJ-01 X 53620499 53620499 G C HUWE1 Nonsense_Mutation p.S1189* 0.39 TCGA-CU-A3KJ-01 X 71710772 71710772 C G HDAC8 Intron 0.83 TCGA-CU-A3QU-01 10 34630676 34630689 ACCTGTCATCTTCT - PARD3 Frame_Shift_Del p.E762Afs*9 0.33 TCGA-CU-A3QU-01 10 69926394 69926394 G A MYPN Silent p.E648E 0.10 TCGA-CU-A3QU-01 11 105797472 105797472 T C GRIA4 Missense_Mutation p.L618P 0.22 deleterious(0) probably_damaging(0.997) TCGA-CU-A3QU-01 11 11362441 11362441 G A GALNT18 Silent p.N401N 0.49 TCGA-CU-A3QU-01 11 120998486 120998486 C T TECTA Silent p.F600F 0.49 TCGA-CU-A3QU-01 11 17113773 17113773 G C PIK3C2A Missense_Mutation p.A1501G 0.44 tolerated(0.1) probably_damaging(0.92) TCGA-CU-A3QU-01 11 17408909 17408909 C T KCNJ11 Missense_Mutation p.V244M 0.45 tolerated(0.09) benign(0.392) TCGA-CU-A3QU-01 11 32875158 32875158 G A PRRG4 3'UTR 0.32 TCGA-CU-A3QU-01 11 44089204 44089204 C T ACCS Silent p.F9F 0.52 TCGA-CU-A3QU-01 11 49227726 49227726 T G FOLH1 Splice_Site p.X40_splice 0.11 TCGA-CU-A3QU-01 11 61036487 61036487 C G VWCE Missense_Mutation p.D597H 0.50 deleterious(0.01) probably_damaging(0.964) TCGA-CU-A3QU-01 11 800588 800596 CGCCCTCGA - PIDD Nonsense_Mutation p.F663_E666delins* 0.55 TCGA-CU-A3QU-01 12 107372070 107372070 A G MTERFD3 Silent p.F141F 0.15 TCGA-CU-A3QU-01 12 55420322 55420322 G C NEUROD4 Missense_Mutation p.E33D 0.74 tolerated(0.25) benign(0.248) TCGA-CU-A3QU-01 12 8608642 8608642 G C CLEC6A 5'UTR 0.59 TCGA-CU-A3QU-01 13 113556577 113556577 C T MCF2L Missense_Mutation p.P21S 0.38 tolerated_low_confidence(0.11) benign(0.001) TCGA-CU-A3QU-01 13 115089918 115089918 C T CHAMP1 Missense_Mutation p.P201S 0.44 tolerated(0.2) benign(0.015) TCGA-CU-A3QU-01 13 36396889 36396889 C T DCLK1 Missense_Mutation p.D511N 0.47 deleterious(0) possibly_damaging(0.728) TCGA-CU-A3QU-01 14 24739609 24739609 C T RABGGTA Missense_Mutation p.G57E 0.95 deleterious(0.03) possibly_damaging(0.753) TCGA-CU-A3QU-01 14 24739631 24739631 C T RABGGTA Missense_Mutation p.E50K 0.94 tolerated(0.19) benign(0.084) TCGA-CU-A3QU-01 14 24740142 24740142 C T RABGGTA Silent p.L5L 0.80 TCGA-CU-A3QU-01 14 45432049 45432049 G C FAM179B Missense_Mutation p.R142P 0.83 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CU-A3QU-01 14 45432303 45432303 G C FAM179B Missense_Mutation p.D227H 0.89 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-CU-A3QU-01 14 89307466 89307466 A G TTC8 Missense_Mutation p.I139V 0.27 tolerated(0.16) possibly_damaging(0.811) TCGA-CU-A3QU-01 15 72146901 72146901 C G MYO9A Missense_Mutation p.E2055Q 0.52 deleterious(0.04) probably_damaging(0.998) TCGA-CU-A3QU-01 15 83776476 83776476 C G TM6SF1 Missense_Mutation p.S15W 0.56 tolerated(0.09) possibly_damaging(0.735) TCGA-CU-A3QU-01 15 89858609 89858609 G A FANCI Missense_Mutation p.E1305K 0.43 tolerated(0.15) benign(0.005) TCGA-CU-A3QU-01 15 93540489 93540489 C G CHD2 Missense_Mutation p.C1247W 0.31 deleterious(0.05) benign(0.095) TCGA-CU-A3QU-01 15 93540504 93540504 C G CHD2 Silent p.V1252V 0.37 TCGA-CU-A3QU-01 16 24815516 24815516 G A TNRC6A Missense_Mutation p.R1238Q 0.29 deleterious(0.02) probably_damaging(0.961) TCGA-CU-A3QU-01 17 18671866 18671866 G A FBXW10 Missense_Mutation p.G575E 0.32 deleterious(0) probably_damaging(1) TCGA-CU-A3QU-01 17 30615898 30615898 G A RHBDL3 Missense_Mutation p.G128R 0.53 deleterious(0) probably_damaging(0.988) TCGA-CU-A3QU-01 17 33807197 33807197 C A SLFN12L Missense_Mutation p.G11V 0.53 tolerated_low_confidence(0.34) benign(0.063) TCGA-CU-A3QU-01 17 40169378 40169378 G A DNAJC7 Silent p.L19L 0.42 TCGA-CU-A3QU-01 17 43345029 43345029 C T MAP3K14-AS1 RNA 0.42 TCGA-CU-A3QU-01 17 48741058 48741058 A G ABCC3 Missense_Mutation p.I339V 0.35 tolerated(0.9) benign(0.1) TCGA-CU-A3QU-01 17 6905219 6905219 C G AC027763.2 Intron 0.55 TCGA-CU-A3QU-01 17 73832317 73832317 G A UNC13D Silent p.F470F 0.53 TCGA-CU-A3QU-01 17 76993384 76993384 G A CANT1 Silent p.I107I 0.46 TCGA-CU-A3QU-01 17 79847100 79847100 C T ALYREF Missense_Mutation p.A166T 0.49 deleterious(0.01) possibly_damaging(0.806) TCGA-CU-A3QU-01 17 79994847 79994847 C G DCXR Missense_Mutation p.E65Q 0.36 tolerated(0.12) benign(0.065) TCGA-CU-A3QU-01 17 80400259 80400259 G A HEXDC Missense_Mutation p.E517K 0.49 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-CU-A3QU-01 18 13681707 13681707 G C FAM210A Missense_Mutation p.Q124E 0.44 deleterious(0.03) possibly_damaging(0.836) TCGA-CU-A3QU-01 18 9708362 9708362 G A RAB31 5'UTR 0.25 TCGA-CU-A3QU-01 19 16688392 16688392 G T MED26 Silent p.L83L 0.47 TCGA-CU-A3QU-01 19 18327578 18327578 C G PDE4C Silent p.L486L 0.39 TCGA-CU-A3QU-01 19 19371709 19371709 C T HAPLN4 Missense_Mutation p.V133I 0.34 tolerated(0.16) possibly_damaging(0.636) TCGA-CU-A3QU-01 19 2425690 2425690 C T TIMM13 3'UTR 0.40 TCGA-CU-A3QU-01 19 33113450 33113450 G C ANKRD27 Missense_Mutation p.L569V 0.44 deleterious(0) possibly_damaging(0.694) TCGA-CU-A3QU-01 19 45868143 45868143 G A ERCC2 Silent p.L183L 0.48 TCGA-CU-A3QU-01 19 46823770 46823770 C A HIF3A Silent p.R366R 0.53 TCGA-CU-A3QU-01 19 49384274 49384274 G A TULP2 Silent p.F519F 0.36 TCGA-CU-A3QU-01 19 49384281 49384281 G A TULP2 Missense_Mutation p.S517F 0.38 deleterious(0) probably_damaging(1) TCGA-CU-A3QU-01 19 52393765 52393765 C A ZNF649 3'UTR 0.67 TCGA-CU-A3QU-01 19 6372969 6372969 G A ALKBH7 Silent p.E46E 0.78 TCGA-CU-A3QU-01 1 116243637 116243637 C T CASQ2 3'UTR 0.42 TCGA-CU-A3QU-01 1 12336628 12336628 G T VPS13D Nonsense_Mutation p.E995* 0.61 TCGA-CU-A3QU-01 1 12918913 12918913 C T PRAMEF2 Silent p.L17L 0.58 TCGA-CU-A3QU-01 1 1372365 1372365 C T VWA1 Silent p.S44S 0.49 TCGA-CU-A3QU-01 1 153930832 153930832 C A CRTC2 Missense_Mutation p.G48C 0.42 tolerated(0.07) possibly_damaging(0.836) TCGA-CU-A3QU-01 1 163317648 163317648 G A NUF2 Silent p.K348K 0.17 TCGA-CU-A3QU-01 1 167365587 167365587 G A POU2F1 Missense_Mutation p.R351Q 0.91 deleterious(0) unknown(0) TCGA-CU-A3QU-01 1 200819069 200819069 G A CAMSAP2 Missense_Mutation p.E1058K 0.27 tolerated(0.57) benign(0.003) TCGA-CU-A3QU-01 1 229567907 229567907 G C ACTA1 Missense_Mutation p.I214M 0.59 tolerated_low_confidence(0.08) probably_damaging(0.95) TCGA-CU-A3QU-01 1 235403707 235403707 A G ARID4B Missense_Mutation p.I169T 0.91 tolerated(0.52) benign(0.002) TCGA-CU-A3QU-01 1 248789671 248789671 G C OR2T11 Missense_Mutation p.F253L 0.20 tolerated(0.27) benign(0.241) TCGA-CU-A3QU-01 1 249119080 249119080 G A SH3BP5L Missense_Mutation p.R19W 0.70 deleterious_low_confidence(0) benign(0.041) TCGA-CU-A3QU-01 1 35853067 35853067 C T ZMYM4 Nonsense_Mutation p.Q709* 0.32 TCGA-CU-A3QU-01 1 64114205 64114205 G A PGM1 Missense_Mutation p.E406K 0.29 deleterious(0) probably_damaging(0.998) TCGA-CU-A3QU-01 1 67672625 67672625 G A IL23R Missense_Mutation p.E229K 0.69 deleterious(0.03) possibly_damaging(0.801) TCGA-CU-A3QU-01 1 74670283 74670283 C A FPGT Missense_Mutation p.D184E 0.12 tolerated(0.08) benign(0.038) TCGA-CU-A3QU-01 1 92789860 92789860 G C RPAP2 Silent p.L461L 0.24 TCGA-CU-A3QU-01 20 2312720 2312720 C T TGM3 Missense_Mutation p.T469M 0.47 tolerated(0.07) probably_damaging(0.964) TCGA-CU-A3QU-01 20 23420793 23420793 C T CSTL1 5'UTR 0.43 TCGA-CU-A3QU-01 20 31021691 31021691 A T ASXL1 Nonsense_Mutation p.K564* 0.36 TCGA-CU-A3QU-01 20 34022797 34022797 G A GDF5OS 3'UTR 0.75 TCGA-CU-A3QU-01 20 44979476 44979476 G T SLC35C2 Silent p.L297L 0.19 TCGA-CU-A3QU-01 20 4850465 4850465 T G SLC23A2 Intron 0.58 TCGA-CU-A3QU-01 21 45945598 45945598 C T TSPEAR Missense_Mutation p.R425Q 0.37 tolerated(0.07) probably_damaging(0.975) TCGA-CU-A3QU-01 2 103013262 103013262 G A IL18R1 Silent p.K514K 0.35 TCGA-CU-A3QU-01 2 103343352 103343352 C G MFSD9 Missense_Mutation p.G127R 0.51 deleterious(0) probably_damaging(0.997) TCGA-CU-A3QU-01 2 1437377 1437377 C T TPO Missense_Mutation p.T116M 0.58 deleterious(0.02) benign(0.097) TCGA-CU-A3QU-01 2 176984047 176984047 C T HOXD10 3'UTR 0.50 TCGA-CU-A3QU-01 2 189449086 189449086 A G GULP1 Missense_Mutation p.N235S 0.23 tolerated(0.08) benign(0.437) TCGA-CU-A3QU-01 2 216249686 216249686 C T FN1 Silent p.P1542P 0.58 TCGA-CU-A3QU-01 2 73466864 73466864 G A CCT7 Missense_Mutation p.E34K 0.46 tolerated(0.09) benign(0.043) TCGA-CU-A3QU-01 2 84811310 84811310 T C DNAH6 Missense_Mutation p.V806A 0.23 tolerated(0.75) benign(0.001) TCGA-CU-A3QU-01 3 129324823 129324823 G A PLXND1 Silent p.F220F 0.40 TCGA-CU-A3QU-01 3 16636050 16636050 A G DAZL Missense_Mutation p.V224A 0.50 tolerated(0.14) benign(0.005) TCGA-CU-A3QU-01 3 183368873 183368873 G C KLHL24 Silent p.L243L 0.43 TCGA-CU-A3QU-01 3 183368878 183368878 G A KLHL24 Missense_Mutation p.R245K 0.42 tolerated(0.45) benign(0.042) TCGA-CU-A3QU-01 3 183369003 183369003 G A KLHL24 Missense_Mutation p.E287K 0.45 deleterious(0) probably_damaging(0.912) TCGA-CU-A3QU-01 3 19384094 19384094 G T KCNH8 Missense_Mutation p.R153I 0.43 deleterious(0.02) benign(0.013) TCGA-CU-A3QU-01 3 32995542 32995542 G A CCR4 Missense_Mutation p.G210R 0.41 deleterious(0) probably_damaging(1) TCGA-CU-A3QU-01 3 49692105 49692105 C T BSN Missense_Mutation p.R1706W 0.36 unknown(0) TCGA-CU-A3QU-01 3 52813598 52813598 G A ITIH1 Silent p.V187V 0.55 TCGA-CU-A3QU-01 3 57850350 57850350 G T SLMAP Nonsense_Mutation p.E348* 0.45 TCGA-CU-A3QU-01 4 159547979 159547979 G C RXFP1 Missense_Mutation p.E255Q 0.48 deleterious(0.02) probably_damaging(0.992) TCGA-CU-A3QU-01 4 36130168 36130168 C T ARAP2 Nonsense_Mutation p.W1209* 0.37 TCGA-CU-A3QU-01 4 39233498 39233498 C T WDR19 Silent p.H688H 0.38 TCGA-CU-A3QU-01 4 46737171 46737171 G A COX7B2 Silent p.L13L 0.38 TCGA-CU-A3QU-01 4 48549632 48549632 T A FRYL Missense_Mutation p.K1681N 0.59 tolerated(0.22) possibly_damaging(0.58) TCGA-CU-A3QU-01 5 113698898 113698898 C T KCNN2 Silent p.G142G 0.95 TCGA-CU-A3QU-01 5 163407 163407 C G PLEKHG4B Missense_Mutation p.H718D 0.45 deleterious(0.04) possibly_damaging(0.802) TCGA-CU-A3QU-01 5 38370443 38370443 G A EGFLAM Silent p.Q197Q 0.39 TCGA-CU-A3QU-01 5 43547922 43547922 C G PAIP1 Missense_Mutation p.E177Q 0.43 deleterious(0) probably_damaging(0.989) TCGA-CU-A3QU-01 6 167550918 167550918 G A CCR6 3'UTR 0.92 TCGA-CU-A3QU-01 6 26285307 26285307 C A HIST1H4H 3'UTR 0.22 TCGA-CU-A3QU-01 6 29974704 29974704 G A ZNRD1-AS1 Intron 0.57 TCGA-CU-A3QU-01 6 30856397 30856397 G A DDR1 Intron 0.53 TCGA-CU-A3QU-01 6 33179090 33179090 G T RING1 Missense_Mutation p.R204L 0.36 tolerated(0.28) unknown(0) TCGA-CU-A3QU-01 6 36651906 36651906 C T CDKN1A Nonsense_Mutation p.Q10* 0.59 TCGA-CU-A3QU-01 6 36652198 36652199 - G CDKN1A Frame_Shift_Ins p.E108Gfs*21 0.25 TCGA-CU-A3QU-01 6 41909293 41909293 A C CCND3 Missense_Mutation p.L32R 0.64 deleterious(0) probably_damaging(0.999) TCGA-CU-A3QU-01 6 43608115 43608115 G C MAD2L1BP Missense_Mutation p.D256H 0.57 deleterious(0.01) probably_damaging(0.988) TCGA-CU-A3QU-01 6 47200581 47200581 C G TNFRSF21 Missense_Mutation p.E630Q 0.39 tolerated(0.07) possibly_damaging(0.802) TCGA-CU-A3QU-01 7 117232105 117232105 G A CFTR Silent p.G628G 0.43 TCGA-CU-A3QU-01 7 21818711 21818711 G C DNAH11 Missense_Mutation p.E3165Q 0.50 probably_damaging(0.999) TCGA-CU-A3QU-01 7 38393369 38393369 G A TRGV4 Nonsense_Mutation p.R101* 0.79 TCGA-CU-A3QU-01 7 57188745 57188745 T C ZNF479 Missense_Mutation p.K126R 0.08 tolerated(1) benign(0.071) TCGA-CU-A3QU-01 7 64293009 64293009 G C ZNF138 3'Flank 0.22 TCGA-CU-A3QU-01 7 72436703 72436703 C T TRIM74 5'UTR 0.21 TCGA-CU-A3QU-01 7 73535372 73535372 G A LIMK1 Missense_Mutation p.E592K 0.40 deleterious(0.01) possibly_damaging(0.806) TCGA-CU-A3QU-01 7 75028203 75028203 G A TRIM73 5'UTR 0.21 TCGA-CU-A3QU-01 8 38677716 38677716 C G TACC1 Silent p.L318L 0.51 TCGA-CU-A3QU-01 8 59410812 59410812 T - CYP7A1 Frame_Shift_Del p.K99Nfs*27 0.16 TCGA-CU-A3QU-01 8 88886086 88886086 T A DCAF4L2 Missense_Mutation p.R38S 0.20 tolerated(1) benign(0) TCGA-CU-A3QU-01 9 106880491 106880491 G A SMC2 Missense_Mutation p.E611K 0.88 tolerated(0.43) benign(0.024) TCGA-CU-A3QU-01 9 111853251 111853251 C A TMEM245 Missense_Mutation p.Q367H 0.78 deleterious(0) probably_damaging(0.987) TCGA-CU-A3QU-01 9 13137991 13137991 C T MPDZ Missense_Mutation p.D1389N 0.60 deleterious(0) probably_damaging(0.999) TCGA-CU-A3QU-01 9 13137996 13137996 C T MPDZ Missense_Mutation p.G1387E 0.57 deleterious(0) probably_damaging(0.998) TCGA-CU-A3QU-01 9 21239749 21239749 G T IFNA14 Silent p.P62P 0.28 TCGA-CU-A3QU-01 9 22008730 22008730 C G CDKN2B Intron 0.11 TCGA-CU-A3QU-01 9 35560350 35560350 G A RUSC2 Missense_Mutation p.G1238E 0.33 tolerated(0.89) benign(0.016) TCGA-CU-A3QU-01 X 1409371 1409371 C T CSF2RA Silent p.F205F 0.41 TCGA-CU-A3QU-01 X 153593318 153593318 C T FLNA Missense_Mutation p.E567K 0.49 tolerated(0.08) possibly_damaging(0.492) TCGA-CU-A3QU-01 X 153662055 153662055 C T ATP6AP1 Missense_Mutation p.R225C 0.10 deleterious(0) probably_damaging(0.97) TCGA-CU-A3QU-01 X 17744787 17744787 G A NHS Missense_Mutation p.R833H 0.93 deleterious(0) probably_damaging(0.999) TCGA-CU-A3QU-01 X 50089666 50089666 C T CCNB3 Missense_Mutation p.R1224C 0.94 tolerated(1) benign(0.001) TCGA-CU-A3QU-01 X 73751256 73751256 C T SLC16A2 Silent p.F496F 0.88 TCGA-CU-A3YL-01 10 104459170 104459170 C G ARL3 Missense_Mutation p.R75T 0.43 deleterious(0) probably_damaging(0.955) TCGA-CU-A3YL-01 10 11367804 11367804 G C CELF2 Missense_Mutation p.E434Q 0.23 deleterious(0) benign(0.12) TCGA-CU-A3YL-01 10 123903125 123903125 C T TACC2 Missense_Mutation p.S1913L 0.19 benign(0.001) TCGA-CU-A3YL-01 10 17216603 17216603 C T TRDMT1 Missense_Mutation p.E41K 0.24 tolerated(0.29) benign(0.051) TCGA-CU-A3YL-01 10 27332447 27332447 G A ANKRD26 Missense_Mutation p.S690L 0.48 deleterious(0) probably_damaging(0.974) TCGA-CU-A3YL-01 10 29776225 29776225 C G SVIL Missense_Mutation p.R1451T 0.26 deleterious(0) probably_damaging(0.946) TCGA-CU-A3YL-01 10 30727994 30727994 G C MAP3K8 Missense_Mutation p.E43Q 0.25 tolerated_low_confidence(0.05) benign(0.227) TCGA-CU-A3YL-01 10 43292616 43292616 G C BMS1 Missense_Mutation p.E642Q 0.32 tolerated(0.07) probably_damaging(0.997) TCGA-CU-A3YL-01 10 43292652 43292652 G C BMS1 Missense_Mutation p.E654Q 0.20 tolerated(0.14) possibly_damaging(0.588) TCGA-CU-A3YL-01 10 48413880 48413880 T A GDF2 Missense_Mutation p.T330S 0.38 tolerated(0.31) benign(0.062) TCGA-CU-A3YL-01 10 61830481 61830481 C T ANK3 Silent p.G3386G 0.35 TCGA-CU-A3YL-01 10 61831191 61831191 C G ANK3 Missense_Mutation p.D3150H 0.28 probably_damaging(0.993) TCGA-CU-A3YL-01 10 81037044 81037044 C G ZMIZ1 Silent p.L129L 0.09 TCGA-CU-A3YL-01 11 1026380 1026380 G A MUC6 Silent p.F831F 0.35 TCGA-CU-A3YL-01 11 124189263 124189263 G A OR8D2 Silent p.F277F 0.38 TCGA-CU-A3YL-01 11 128709677 128709677 G C KCNJ1 Missense_Mutation p.F173L 0.42 deleterious(0) probably_damaging(0.984) TCGA-CU-A3YL-01 11 19209781 19209781 G A CSRP3 Silent p.C61C 0.33 TCGA-CU-A3YL-01 11 31327862 31327862 G C DCDC1 Missense_Mutation p.Q170E 0.42 deleterious(0.01) benign(0.297) TCGA-CU-A3YL-01 11 57076206 57076206 C G TNKS1BP1 Missense_Mutation p.D1327H 0.35 deleterious(0.01) benign(0.086) TCGA-CU-A3YL-01 11 60671234 60671234 T C PRPF19 Missense_Mutation p.D40G 0.35 tolerated(0.46) probably_damaging(0.996) TCGA-CU-A3YL-01 11 62430551 62430551 C G C11orf48 3'UTR 0.25 TCGA-CU-A3YL-01 11 63666131 63666131 A T MARK2 Missense_Mutation p.E130V 0.36 deleterious(0) probably_damaging(0.999) TCGA-CU-A3YL-01 11 63978782 63978782 C T FERMT3 Missense_Mutation p.H184Y 0.57 tolerated(1) benign(0.003) TCGA-CU-A3YL-01 11 64575138 64575138 C T MEN1 Silent p.L228L 0.51 TCGA-CU-A3YL-01 11 65315619 65315619 C T LTBP3 Intron 0.24 TCGA-CU-A3YL-01 11 66259013 66259013 G A DPP3 Missense_Mutation p.E283K 0.40 tolerated(0.56) benign(0.003) TCGA-CU-A3YL-01 11 6643190 6643190 G A DCHS1 Silent p.I3239I 0.54 TCGA-CU-A3YL-01 11 67052379 67052379 C G ADRBK1 Missense_Mutation p.F572L 0.35 deleterious(0.05) benign(0.107) TCGA-CU-A3YL-01 11 85445049 85445049 G C SYTL2 Missense_Mutation p.I440M 0.31 tolerated(0.07) benign(0.27) TCGA-CU-A3YL-01 11 85445395 85445395 G C SYTL2 Missense_Mutation p.S325C 0.30 deleterious(0.01) possibly_damaging(0.67) TCGA-CU-A3YL-01 12 112843711 112843711 C T RPL6 Silent p.K220K 0.32 TCGA-CU-A3YL-01 12 122199641 122199641 C G TMEM120B Nonsense_Mutation p.S183* 0.30 TCGA-CU-A3YL-01 12 122962400 122962400 C G ZCCHC8 Missense_Mutation p.E445Q 0.40 deleterious(0.01) possibly_damaging(0.588) TCGA-CU-A3YL-01 12 124821437 124821437 G A NCOR2 Missense_Mutation p.R1993C 0.38 probably_damaging(0.977) TCGA-CU-A3YL-01 12 31605240 31605240 C G DENND5B Missense_Mutation p.K421N 0.38 tolerated(0.23) benign(0.199) TCGA-CU-A3YL-01 12 40699617 40699617 C T LRRK2 Silent p.L1270L 0.36 TCGA-CU-A3YL-01 12 46231177 46231178 - GGATA ARID2 Frame_Shift_Ins p.F369Ifs*4 0.14 TCGA-CU-A3YL-01 12 49434621 49434621 G A KMT2D Missense_Mutation p.S2311F 0.41 probably_damaging(0.984) TCGA-CU-A3YL-01 12 49435962 49435962 C A KMT2D Nonsense_Mutation p.E2007* 0.21 TCGA-CU-A3YL-01 12 56563943 56563943 C G SMARCC2 Missense_Mutation p.E768D 0.30 tolerated(0.21) benign(0.217) TCGA-CU-A3YL-01 12 56629471 56629471 G C SLC39A5 Missense_Mutation p.R311P 0.31 deleterious(0.03) benign(0.046) TCGA-CU-A3YL-01 12 57472433 57472433 C G TMEM194A Missense_Mutation p.L32F 0.31 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-CU-A3YL-01 12 57550665 57550665 C G LRP1 Missense_Mutation p.S508C 0.25 probably_damaging(0.969) TCGA-CU-A3YL-01 12 64882283 64882283 G A TBK1 Missense_Mutation p.D453N 0.47 tolerated(0.15) possibly_damaging(0.663) TCGA-CU-A3YL-01 12 6575368 6575368 C G VAMP1 Intron 0.44 TCGA-CU-A3YL-01 12 6700750 6700750 C T CHD4 Splice_Site p.X1075_splice 0.43 TCGA-CU-A3YL-01 12 6707229 6707232 GATA - CHD4 Frame_Shift_Del p.Y574Sfs*43 0.29 TCGA-CU-A3YL-01 13 20411884 20411884 G A ZMYM5 Missense_Mutation p.S317F 0.17 deleterious(0.04) possibly_damaging(0.683) TCGA-CU-A3YL-01 13 42874879 42874879 C T AKAP11 Missense_Mutation p.S666L 0.26 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 13 49796426 49796426 G A MLNR Silent p.R384R 0.30 TCGA-CU-A3YL-01 13 98116619 98116619 G A RAP2A Missense_Mutation p.E159K 0.24 deleterious(0.02) possibly_damaging(0.9) TCGA-CU-A3YL-01 14 103416915 103416915 G T CDC42BPB Missense_Mutation p.S1066Y 0.40 deleterious(0.02) possibly_damaging(0.866) TCGA-CU-A3YL-01 14 21990340 21990340 C T SALL2 3'UTR 0.25 TCGA-CU-A3YL-01 14 23884449 23884449 C G MYH7 Missense_Mutation p.E1772Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-CU-A3YL-01 14 24843541 24843541 C T NFATC4 Missense_Mutation p.S644L 0.32 deleterious(0.02) probably_damaging(0.94) TCGA-CU-A3YL-01 14 31613367 31613367 C G HECTD1 Missense_Mutation p.E910Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-CU-A3YL-01 14 37892073 37892073 C G MIPOL1 Missense_Mutation p.S317C 0.20 deleterious(0.02) benign(0.036) TCGA-CU-A3YL-01 14 39644553 39644553 G A PNN Missense_Mutation p.E24K 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-CU-A3YL-01 14 61517300 61517300 G A SLC38A6 Silent p.V332V 0.31 TCGA-CU-A3YL-01 14 64449432 64449432 G C SYNE2 Missense_Mutation p.D641H 0.42 probably_damaging(0.94) TCGA-CU-A3YL-01 14 88693731 88693731 C T KCNK10 Silent p.E223E 0.34 TCGA-CU-A3YL-01 14 88693853 88693853 C T KCNK10 Missense_Mutation p.E183K 0.27 tolerated(0.16) possibly_damaging(0.559) TCGA-CU-A3YL-01 15 20488793 20488793 C T CHEK2P2 RNA 0.10 TCGA-CU-A3YL-01 15 30019056 30019056 G A TJP1 Missense_Mutation p.S747F 0.37 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 15 34078093 34078093 G A RYR3 Missense_Mutation p.E3167K 0.40 benign(0.132) TCGA-CU-A3YL-01 15 40475992 40475992 C G BUB1B Missense_Mutation p.S220C 0.48 deleterious(0.01) possibly_damaging(0.765) TCGA-CU-A3YL-01 15 49148320 49148320 C A SHC4 Nonsense_Mutation p.E358* 0.31 TCGA-CU-A3YL-01 15 65808056 65808056 C G DPP8 5'UTR 0.35 TCGA-CU-A3YL-01 15 89392692 89392692 C T ACAN Missense_Mutation p.L586F 0.43 tolerated(0.19) unknown(0) TCGA-CU-A3YL-01 16 18841068 18841068 G A SMG1 Missense_Mutation p.S3048L 0.47 tolerated_low_confidence(0.09) benign(0.038) TCGA-CU-A3YL-01 16 2034709 2034709 C T GFER Intron 0.39 TCGA-CU-A3YL-01 16 3788651 3788651 C G CREBBP Missense_Mutation p.D1435H 0.33 unknown(0) TCGA-CU-A3YL-01 16 4924401 4924401 G A UBN1 Missense_Mutation p.D664N 0.27 deleterious(0) possibly_damaging(0.628) TCGA-CU-A3YL-01 16 53524211 53524211 G A RBL2 Silent p.%3D 0.30 TCGA-CU-A3YL-01 16 67291253 67291253 G C SLC9A5 Missense_Mutation p.L447F 0.24 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 16 67324842 67324842 G A KCTD19 Silent p.I871I 0.31 TCGA-CU-A3YL-01 16 67917174 67917174 C G EDC4 Intron 0.62 TCGA-CU-A3YL-01 16 68373809 68373809 G C PRMT7 Missense_Mutation p.E289Q 0.46 tolerated(0.17) benign(0.064) TCGA-CU-A3YL-01 16 71718490 71718490 C G PHLPP2 Missense_Mutation p.K208N 0.28 tolerated(0.12) possibly_damaging(0.859) TCGA-CU-A3YL-01 16 72831063 72831063 G C ZFHX3 Missense_Mutation p.Q1840E 0.45 possibly_damaging(0.676) TCGA-CU-A3YL-01 16 75579304 75579304 C G TMEM231 Silent p.L205L 0.41 TCGA-CU-A3YL-01 16 75663370 75663370 C T KARS Silent p.A526A 0.34 TCGA-CU-A3YL-01 16 89929916 89929916 G C SPIRE2 Silent p.L536L 0.31 TCGA-CU-A3YL-01 17 15960870 15960870 G C NCOR1 Nonsense_Mutation p.S2117* 0.34 TCGA-CU-A3YL-01 17 15960927 15960927 G A NCOR1 Missense_Mutation p.S2098L 0.31 probably_damaging(0.989) TCGA-CU-A3YL-01 17 15961794 15961794 G C NCOR1 Missense_Mutation p.Q2001E 0.31 benign(0.029) TCGA-CU-A3YL-01 17 17700785 17700785 C T RAI1 Missense_Mutation p.S1508F 0.83 deleterious(0.01) benign(0.332) TCGA-CU-A3YL-01 17 2222158 2222158 G C SRR Missense_Mutation p.D112H 0.71 tolerated(0.06) benign(0.005) TCGA-CU-A3YL-01 17 26518092 26518092 G C NLK Missense_Mutation p.D428H 0.23 deleterious(0.02) probably_damaging(0.957) TCGA-CU-A3YL-01 17 32685258 32685258 T A CCL13 3'UTR 0.40 TCGA-CU-A3YL-01 17 36704795 36704795 C G SRCIN1 Missense_Mutation p.E1090Q 0.27 tolerated(0.87) benign(0.426) TCGA-CU-A3YL-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.38 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 17 3854917 3854917 G A ATP2A3 Silent p.I94I 0.69 TCGA-CU-A3YL-01 17 39680110 39680111 - A KRT19 Frame_Shift_Ins p.Y363Lfs*75 0.15 TCGA-CU-A3YL-01 17 43138697 43138697 G C NMT1 5'UTR 0.13 TCGA-CU-A3YL-01 17 46862467 46862467 C A TTLL6 Nonsense_Mutation p.E620* 0.33 TCGA-CU-A3YL-01 17 46862485 46862485 C T TTLL6 Missense_Mutation p.D614N 0.33 deleterious(0.05) benign(0.033) TCGA-CU-A3YL-01 17 47688672 47688672 C G SPOP Missense_Mutation p.E210Q 0.45 tolerated(0.06) benign(0.013) TCGA-CU-A3YL-01 17 54671875 54671875 C A NOG Silent p.G97G 0.56 TCGA-CU-A3YL-01 17 57288781 57288781 G C SMG8 Missense_Mutation p.E457Q 0.40 tolerated(0.66) benign(0.015) TCGA-CU-A3YL-01 17 58288398 58288398 C T USP32 Silent p.K800K 0.15 TCGA-CU-A3YL-01 17 58288867 58288867 C G USP32 Missense_Mutation p.E730Q 0.22 tolerated(0.1) probably_damaging(0.968) TCGA-CU-A3YL-01 17 58289433 58289433 C G USP32 Missense_Mutation p.E711Q 0.19 deleterious(0) probably_damaging(0.968) TCGA-CU-A3YL-01 17 59946642 59946642 C G INTS2 Missense_Mutation p.E1052Q 0.50 tolerated(0.1) probably_damaging(0.971) TCGA-CU-A3YL-01 17 61499280 61499280 C G TANC2 Missense_Mutation p.I1979M 0.41 deleterious_low_confidence(0.04) probably_damaging(0.915) TCGA-CU-A3YL-01 17 74737112 74737112 C T MFSD11 Nonsense_Mutation p.Q76* 0.36 TCGA-CU-A3YL-01 17 78318559 78318559 G A RNF213 Missense_Mutation p.E2142K 0.39 possibly_damaging(0.521) TCGA-CU-A3YL-01 18 43328388 43328388 G C SLC14A1 Missense_Mutation p.E388Q 0.30 deleterious(0.05) benign(0.004) TCGA-CU-A3YL-01 18 61647088 61647088 C T SERPINB8 Silent p.L74L 0.36 TCGA-CU-A3YL-01 18 67992983 67992983 C T SOCS6 Missense_Mutation p.S360L 0.27 tolerated(0.13) benign(0.164) TCGA-CU-A3YL-01 19 10670361 10670361 G C KRI1 Missense_Mutation p.I323M 0.25 tolerated(0.12) benign(0.362) TCGA-CU-A3YL-01 19 1089934 1089934 C A POLR2E Missense_Mutation p.R172S 0.21 deleterious(0) possibly_damaging(0.86) TCGA-CU-A3YL-01 19 1255046 1255046 C G MIDN Nonsense_Mutation p.S281* 0.23 TCGA-CU-A3YL-01 19 15281188 15281188 G A NOTCH3 Missense_Mutation p.H1690Y 0.30 deleterious(0.01) benign(0.328) TCGA-CU-A3YL-01 19 16902160 16902160 G C NWD1 Splice_Site p.X981_splice 0.30 TCGA-CU-A3YL-01 19 21240308 21240308 G C ZNF430 Missense_Mutation p.E398D 0.18 deleterious(0.03) benign(0.182) TCGA-CU-A3YL-01 19 33467384 33467384 G A C19orf40 Silent p.K148K 0.30 TCGA-CU-A3YL-01 19 39104548 39104548 G A MAP4K1 Missense_Mutation p.R169C 0.30 deleterious(0) probably_damaging(0.939) TCGA-CU-A3YL-01 19 39955605 39955605 C G SUPT5H Silent p.L264L 0.23 TCGA-CU-A3YL-01 19 41442088 41442088 G C CYP2B7P RNA 0.25 TCGA-CU-A3YL-01 19 42914706 42914706 G T LIPE Missense_Mutation p.S391Y 0.24 deleterious(0.01) probably_damaging(0.951) TCGA-CU-A3YL-01 19 43257459 43257459 C A PSG8 3'Flank 0.07 TCGA-CU-A3YL-01 19 45157217 45157217 G A PVR Missense_Mutation p.G258D 0.56 deleterious(0.01) probably_damaging(0.922) TCGA-CU-A3YL-01 19 4538815 4538815 C T LRG1 Missense_Mutation p.E61K 0.09 tolerated(0.68) benign(0) TCGA-CU-A3YL-01 19 45976195 45976195 C T FOSB Silent p.F314F 0.24 TCGA-CU-A3YL-01 19 47969393 47969393 C T SLC8A2 Missense_Mutation p.A90T 0.32 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 19 50310577 50310577 C G FUZ Missense_Mutation p.R363T 0.17 tolerated(0.08) probably_damaging(0.943) TCGA-CU-A3YL-01 19 51857428 51857428 G A ETFB Silent p.V155V 0.28 TCGA-CU-A3YL-01 19 51957546 51957546 G A SIGLEC8 Missense_Mutation p.S391L 0.21 tolerated(0.07) possibly_damaging(0.825) TCGA-CU-A3YL-01 19 53116563 53116563 G A ZNF83 Missense_Mutation p.H419Y 0.22 deleterious(0.01) possibly_damaging(0.555) TCGA-CU-A3YL-01 19 53678789 53678789 G A ZNF665 Silent p.F17F 0.21 TCGA-CU-A3YL-01 19 54666454 54666454 T A TMC4 Missense_Mutation p.D491V 0.48 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 19 57286038 57286038 G T ZIM2 3'UTR 0.20 TCGA-CU-A3YL-01 19 57642078 57642078 G A USP29 Missense_Mutation p.E679K 0.15 tolerated(0.23) benign(0.198) TCGA-CU-A3YL-01 19 58549427 58549427 G T ZSCAN1 Nonsense_Mutation p.E75* 0.19 TCGA-CU-A3YL-01 19 59057194 59057194 C T TRIM28 Silent p.L173L 0.25 TCGA-CU-A3YL-01 1 100111859 100111859 T A PALMD 5'UTR 0.34 TCGA-CU-A3YL-01 1 114940612 114940612 T C TRIM33 Missense_Mutation p.M1041V 0.30 tolerated(0.18) benign(0.002) TCGA-CU-A3YL-01 1 115829160 115829160 C T NGF Missense_Mutation p.R86H 0.25 deleterious(0) probably_damaging(0.998) TCGA-CU-A3YL-01 1 120462189 120462189 C G NOTCH2 Missense_Mutation p.D1843H 0.33 tolerated(0.06) benign(0.014) TCGA-CU-A3YL-01 1 142713368 142713368 G C RP11-417J8.6 RNA 0.43 TCGA-CU-A3YL-01 1 152127966 152127966 G T RPTN Missense_Mutation p.Q537K 0.34 deleterious(0) probably_damaging(0.968) TCGA-CU-A3YL-01 1 158747279 158747279 G A OR6N2 Silent p.I49I 0.24 TCGA-CU-A3YL-01 1 161697272 161697272 G A FCRLB Silent p.L367L 0.35 TCGA-CU-A3YL-01 1 1636040 1636040 C T CDK11A Missense_Mutation p.E505K 0.62 deleterious(0) unknown(0) TCGA-CU-A3YL-01 1 1650892 1650892 C G CDK11A Missense_Mutation p.G77A 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.821) TCGA-CU-A3YL-01 1 166959001 166959001 T C MAEL Missense_Mutation p.Y54H 0.33 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 1 179399689 179399689 G C AXDND1 Missense_Mutation p.E479Q 0.26 tolerated(0.16) benign(0.004) TCGA-CU-A3YL-01 1 180243439 180243439 C G LHX4 Missense_Mutation p.Q300E 0.33 tolerated(0.51) benign(0.007) TCGA-CU-A3YL-01 1 183895257 183895257 C T RGL1 Missense_Mutation p.S748L 0.23 deleterious(0) benign(0.184) TCGA-CU-A3YL-01 1 186643532 186643532 C T PTGS2 Missense_Mutation p.D590N 0.33 tolerated_low_confidence(0.38) benign(0.008) TCGA-CU-A3YL-01 1 201980282 201980282 G - ELF3 Frame_Shift_Del p.I7Lfs*36 0.28 TCGA-CU-A3YL-01 1 217804728 217804728 C G SPATA17 Missense_Mutation p.T3R 0.19 tolerated(0.06) benign(0.222) TCGA-CU-A3YL-01 1 233363102 233363102 G C PCNXL2 Missense_Mutation p.L792V 0.39 tolerated(0.14) benign(0.066) TCGA-CU-A3YL-01 1 248487244 248487244 G A OR2M7 Silent p.F209F 0.29 TCGA-CU-A3YL-01 1 248637607 248637607 A - OR2T3 Frame_Shift_Del p.*319C 0.15 TCGA-CU-A3YL-01 1 26371526 26371526 G C SLC30A2 Missense_Mutation p.S78C 0.26 tolerated(0.17) benign(0.114) TCGA-CU-A3YL-01 1 28817511 28817511 G C PHACTR4 Missense_Mutation p.R632P 0.24 deleterious(0) probably_damaging(0.914) TCGA-CU-A3YL-01 1 32687561 32687561 C T TMEM234 Silent p.L25L 0.30 TCGA-CU-A3YL-01 1 35915552 35915552 C T KIAA0319L Missense_Mutation p.E757K 0.46 deleterious(0.01) probably_damaging(0.91) TCGA-CU-A3YL-01 1 3649318 3649318 G C TP73 Missense_Mutation p.G529A 0.12 tolerated(0.3) benign(0.116) TCGA-CU-A3YL-01 1 37979215 37979215 G T MEAF6 Intron 0.50 TCGA-CU-A3YL-01 1 41990541 41990541 C T HIVEP3 Missense_Mutation p.G1750S 0.32 probably_damaging(0.999) TCGA-CU-A3YL-01 1 72400821 72400821 G A NEGR1 Missense_Mutation p.T117M 0.38 deleterious(0) probably_damaging(0.967) TCGA-CU-A3YL-01 1 75204401 75204401 G A TYW3 Missense_Mutation p.D95N 0.36 tolerated(0.24) benign(0.084) TCGA-CU-A3YL-01 1 89528910 89528910 G A GBP1 Missense_Mutation p.S3L 0.32 tolerated(0.07) benign(0.02) TCGA-CU-A3YL-01 1 979601 979601 C G AGRN Silent p.V704V 0.42 TCGA-CU-A3YL-01 20 10603663 10603663 G A SLX4IP Missense_Mutation p.R288Q 0.33 tolerated(0.26) benign(0.008) TCGA-CU-A3YL-01 20 3888748 3888748 C T PANK2 Silent p.L268L 0.18 TCGA-CU-A3YL-01 20 44180578 44180578 G A WFDC8 Intron 0.22 TCGA-CU-A3YL-01 20 58883542 58883542 C A MIR646 RNA 0.27 TCGA-CU-A3YL-01 20 629243 629243 C G RP5-850E9.3 3'UTR 0.27 TCGA-CU-A3YL-01 21 38510991 38510991 C G TTC3 Missense_Mutation p.L546V 0.32 deleterious(0) probably_damaging(0.957) TCGA-CU-A3YL-01 21 43541202 43541202 G A UMODL1 Missense_Mutation p.D1027N 0.25 tolerated(0.15) possibly_damaging(0.741) TCGA-CU-A3YL-01 21 46888254 46888254 G A COL18A1 Missense_Mutation p.V249I 0.39 unknown(0) TCGA-CU-A3YL-01 22 19960296 19960296 C T ARVCF Missense_Mutation p.D869N 0.26 deleterious(0) benign(0.021) TCGA-CU-A3YL-01 22 20100722 20100722 C T TRMT2A Missense_Mutation p.E490K 0.47 deleterious(0) probably_damaging(0.959) TCGA-CU-A3YL-01 22 23406202 23406202 G T RTDR1 Silent p.L177L 0.30 TCGA-CU-A3YL-01 22 26156955 26156955 G C MYO18B 5'UTR 0.19 TCGA-CU-A3YL-01 22 39178724 39178724 C G DNAL4 Missense_Mutation p.E5Q 0.23 tolerated(0.14) benign(0.022) TCGA-CU-A3YL-01 22 45728377 45728377 G T FAM118A Missense_Mutation p.Q241H 0.37 deleterious(0.03) probably_damaging(0.981) TCGA-CU-A3YL-01 22 50187866 50187866 G A BRD1 Silent p.L725L 0.35 TCGA-CU-A3YL-01 22 50727555 50727555 A G PLXNB2 Missense_Mutation p.F362S 0.23 deleterious(0.01) possibly_damaging(0.886) TCGA-CU-A3YL-01 2 130910919 130910919 G A SMPD4 Silent p.L705L 0.29 TCGA-CU-A3YL-01 2 135911282 135911282 G A RAB3GAP1 Missense_Mutation p.E709K 0.31 tolerated(0.05) possibly_damaging(0.548) TCGA-CU-A3YL-01 2 153575496 153575496 C G ARL6IP6 Missense_Mutation p.L120V 0.28 tolerated(0.16) benign(0.043) TCGA-CU-A3YL-01 2 165404308 165404308 C T GRB14 Missense_Mutation p.E115K 0.24 deleterious(0.05) possibly_damaging(0.875) TCGA-CU-A3YL-01 2 173891911 173891911 G A RAPGEF4 Missense_Mutation p.V828I 0.32 tolerated(0.28) benign(0.036) TCGA-CU-A3YL-01 2 179455032 179455032 G A TTN Missense_Mutation p.P20474S 0.32 TCGA-CU-A3YL-01 2 183800087 183800087 C G NCKAP1 Missense_Mutation p.L910F 0.40 deleterious(0) possibly_damaging(0.749) TCGA-CU-A3YL-01 2 185803013 185803013 T C ZNF804A Missense_Mutation p.S964P 0.28 tolerated(0.46) benign(0.002) TCGA-CU-A3YL-01 2 198948687 198948687 C T PLCL1 Missense_Mutation p.S149L 0.32 deleterious(0) probably_damaging(0.959) TCGA-CU-A3YL-01 2 201873710 201873710 G A FAM126B Silent p.F172F 0.32 TCGA-CU-A3YL-01 2 26739408 26739408 G A OTOF Silent p.D129D 0.07 TCGA-CU-A3YL-01 2 27850502 27850502 C T CCDC121 Silent p.E217E 0.37 TCGA-CU-A3YL-01 2 29001877 29001877 C G PPP1CB Missense_Mutation p.I129M 0.30 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-CU-A3YL-01 2 36994239 36994239 G T VIT Nonsense_Mutation p.E164* 0.54 TCGA-CU-A3YL-01 2 48915216 48915216 G A LHCGR Missense_Mutation p.L574F 0.38 deleterious(0) probably_damaging(0.999) TCGA-CU-A3YL-01 2 50724724 50724724 C A NRXN1 Nonsense_Mutation p.G916* 0.22 TCGA-CU-A3YL-01 2 56144869 56144869 G A EFEMP1 Missense_Mutation p.P150S 0.45 tolerated(0.17) benign(0.001) TCGA-CU-A3YL-01 2 68607462 68607462 G C PLEK Silent p.G15G 0.26 TCGA-CU-A3YL-01 2 69046289 69046289 G C ARHGAP25 Missense_Mutation p.M346I 0.36 deleterious(0.01) possibly_damaging(0.852) TCGA-CU-A3YL-01 3 105400767 105400767 G A CBLB Intron 0.19 TCGA-CU-A3YL-01 3 112190070 112190070 C G BTLA Missense_Mutation p.R179T 0.23 deleterious(0.01) possibly_damaging(0.691) TCGA-CU-A3YL-01 3 121396236 121396236 T C GOLGB1 Missense_Mutation p.I2979V 0.19 benign(0.358) TCGA-CU-A3YL-01 3 122849434 122849434 C T PDIA5 Missense_Mutation p.S294F 0.59 deleterious(0.03) possibly_damaging(0.797) TCGA-CU-A3YL-01 3 126708282 126708282 C T PLXNA1 Silent p.I282I 0.27 TCGA-CU-A3YL-01 3 14745900 14745900 G A C3orf20 Missense_Mutation p.R312Q 0.26 tolerated(0.06) probably_damaging(0.989) TCGA-CU-A3YL-01 3 168840502 168840502 T G MECOM Missense_Mutation p.M158L 0.56 tolerated(0.26) benign(0.003) TCGA-CU-A3YL-01 3 32933231 32933231 C T TRIM71 Silent p.S845S 0.20 TCGA-CU-A3YL-01 3 33416785 33416785 C T FBXL2 Silent p.I221I 0.58 TCGA-CU-A3YL-01 3 37033161 37033161 C G EPM2AIP1 Missense_Mutation p.E470Q 0.21 deleterious(0.04) possibly_damaging(0.448) TCGA-CU-A3YL-01 3 49062587 49062587 C T IMPDH2 Silent p.A374A 0.55 TCGA-CU-A3YL-01 3 7503406 7503406 C G GRM7 Silent p.L504L 0.20 TCGA-CU-A3YL-01 3 98002110 98002110 C T OR5H2 Missense_Mutation p.R127C 0.23 deleterious(0) probably_damaging(0.995) TCGA-CU-A3YL-01 4 119613186 119613186 C A METTL14 Missense_Mutation p.D125E 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-CU-A3YL-01 4 141310427 141310427 C T CLGN Missense_Mutation p.G595E 0.16 tolerated(0.07) possibly_damaging(0.747) TCGA-CU-A3YL-01 4 151773605 151773605 G A LRBA Missense_Mutation p.S1086L 0.20 tolerated_low_confidence(0.45) benign(0.021) TCGA-CU-A3YL-01 4 183960063 183960063 G A FAM92A1P2 RNA 0.24 TCGA-CU-A3YL-01 4 187539870 187539870 C - FAT1 Frame_Shift_Del p.D2624Mfs*19 0.20 TCGA-CU-A3YL-01 4 39482639 39482639 G C LIAS 3'Flank 0.38 TCGA-CU-A3YL-01 4 4301661 4301661 G A ZBTB49 5'UTR 0.25 TCGA-CU-A3YL-01 4 56284049 56284049 T A TMEM165 Nonsense_Mutation p.L230* 0.10 TCGA-CU-A3YL-01 4 8288376 8288376 G A HTRA3 Missense_Mutation p.V192M 0.43 deleterious(0) probably_damaging(0.989) TCGA-CU-A3YL-01 5 110835670 110835670 G T STARD4 Missense_Mutation p.R178S 0.37 tolerated(0.73) possibly_damaging(0.792) TCGA-CU-A3YL-01 5 121759024 121759024 G A SNCAIP Missense_Mutation p.E198K 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-CU-A3YL-01 5 127614405 127614405 C G FBN2 Missense_Mutation p.E2423Q 0.28 deleterious(0.04) probably_damaging(0.964) TCGA-CU-A3YL-01 5 140433360 140433360 C G PCDHB1 Missense_Mutation p.R769G 0.31 deleterious(0) benign(0.121) TCGA-CU-A3YL-01 5 140530412 140530412 G C PCDHB6 Missense_Mutation p.E192Q 0.41 tolerated(0.08) benign(0.157) TCGA-CU-A3YL-01 5 14358313 14358313 G A TRIO Silent p.Q691Q 0.28 TCGA-CU-A3YL-01 5 161528316 161528316 C T GABRG2 Silent p.F208F 0.50 TCGA-CU-A3YL-01 5 17275374 17275374 G A BASP1 Missense_Mutation p.E17K 0.32 deleterious(0.01) unknown(0) TCGA-CU-A3YL-01 5 176306326 176306326 G C UNC5A Missense_Mutation p.E734Q 0.29 tolerated(0.29) benign(0.004) TCGA-CU-A3YL-01 5 180041110 180041110 C T FLT4 Missense_Mutation p.V1097M 0.30 deleterious(0) probably_damaging(0.982) TCGA-CU-A3YL-01 5 224526 224526 G T SDHA Missense_Mutation p.G68C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-CU-A3YL-01 5 224527 224527 G T SDHA Missense_Mutation p.G68V 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-CU-A3YL-01 5 37154070 37154070 G C C5orf42 Missense_Mutation p.F2661L 0.45 tolerated(0.29) benign(0.149) TCGA-CU-A3YL-01 5 66460281 66460281 C G MAST4 Silent p.L1758L 0.29 TCGA-CU-A3YL-01 5 68805528 68805528 C G OCLN Missense_Mutation p.S204C 0.35 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 5 76732192 76732192 C A WDR41 Missense_Mutation p.R374I 0.31 deleterious(0.01) possibly_damaging(0.628) TCGA-CU-A3YL-01 6 102516372 102516372 G C GRIK2 Missense_Mutation p.E905Q 0.25 deleterious_low_confidence(0.03) benign(0.342) TCGA-CU-A3YL-01 6 125578274 125578274 G A TPD52L1 Silent p.E152E 0.24 TCGA-CU-A3YL-01 6 1313536 1313537 - A FOXQ1 Frame_Shift_Ins p.S200Kfs*249 0.48 TCGA-CU-A3YL-01 6 132022399 132022399 A T OR2A4 Missense_Mutation p.I48N 0.17 deleterious(0.01) possibly_damaging(0.882) TCGA-CU-A3YL-01 6 139106381 139106381 G A CCDC28A Missense_Mutation p.E204K 0.43 deleterious(0) probably_damaging(0.978) TCGA-CU-A3YL-01 6 144508056 144508056 G A STX11 Missense_Mutation p.E98K 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-CU-A3YL-01 6 150535916 150535916 G A PPP1R14C Missense_Mutation p.D115N 0.23 deleterious(0) possibly_damaging(0.9) TCGA-CU-A3YL-01 6 162622255 162622255 C A PARK2 Missense_Mutation p.V148L 0.18 deleterious(0) benign(0.248) TCGA-CU-A3YL-01 6 168317781 168317782 - T MLLT4 Frame_Shift_Ins p.T854Yfs*4 0.16 TCGA-CU-A3YL-01 6 26056108 26056108 C G HIST1H1C Missense_Mutation p.K183N 0.36 deleterious(0) unknown(0) TCGA-CU-A3YL-01 6 2948867 2948867 C T SERPINB6 Missense_Mutation p.E266K 0.30 tolerated(0.3) benign(0.107) TCGA-CU-A3YL-01 6 30080495 30080495 C T TRIM31 Missense_Mutation p.D30N 0.32 tolerated(0.08) probably_damaging(0.989) TCGA-CU-A3YL-01 6 30891140 30891140 C A VARS2 Missense_Mutation p.S805Y 0.29 deleterious(0.02) benign(0.382) TCGA-CU-A3YL-01 6 38941567 38941567 G A DNAH8 Missense_Mutation p.R4002Q 0.34 benign(0.017) TCGA-CU-A3YL-01 6 43266487 43266487 G C SLC22A7 Missense_Mutation p.E131Q 0.31 deleterious(0.04) benign(0.19) TCGA-CU-A3YL-01 6 7575714 7575714 G C DSP Missense_Mutation p.D875H 0.28 probably_damaging(0.999) TCGA-CU-A3YL-01 7 100390126 100390126 G A ZAN Silent p.A2603A 0.50 TCGA-CU-A3YL-01 7 146805319 146805319 G T CNTNAP2 Missense_Mutation p.V211F 0.41 deleterious(0.01) probably_damaging(0.923) TCGA-CU-A3YL-01 7 148481129 148481129 G A CUL1 Missense_Mutation p.E420K 0.37 deleterious(0) probably_damaging(1) TCGA-CU-A3YL-01 7 148801438 148801438 G C ZNF425 Missense_Mutation p.Q509E 0.38 tolerated(0.24) benign(0.038) TCGA-CU-A3YL-01 7 148802519 148802519 G C ZNF425 Silent p.L148L 0.32 TCGA-CU-A3YL-01 7 150217669 150217669 G C GIMAP7 Missense_Mutation p.D203H 0.33 deleterious(0.04) benign(0.248) TCGA-CU-A3YL-01 7 158663923 158663923 G A WDR60 Missense_Mutation p.E54K 0.40 deleterious(0.05) probably_damaging(0.931) TCGA-CU-A3YL-01 7 36552772 36552772 C T AOAH 3'UTR 0.55 TCGA-CU-A3YL-01 7 44924074 44924074 C T PURB Missense_Mutation p.E292K 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-CU-A3YL-01 7 63982867 63982867 G C ZNF680 Missense_Mutation p.H89D 0.38 deleterious(0.02) probably_damaging(0.994) TCGA-CU-A3YL-01 7 72436447 72436447 G A TRIM74 Missense_Mutation p.P81L 0.25 tolerated(0.38) benign(0.002) TCGA-CU-A3YL-01 7 75617241 75617241 T G POR 3'Flank 0.50 TCGA-CU-A3YL-01 7 77200497 77200497 C T PTPN12 Silent p.L68L 0.25 TCGA-CU-A3YL-01 7 97619396 97619396 G A OCM2 Silent p.L7L 0.26 TCGA-CU-A3YL-01 8 124371477 124371477 T A ATAD2 Nonsense_Mutation p.K456* 0.38 TCGA-CU-A3YL-01 8 17507472 17507472 C T MTUS1 Splice_Site p.X1129_splice 0.65 TCGA-CU-A3YL-01 8 41790517 41790517 C A KAT6A Missense_Mutation p.A1741S 0.31 unknown(0) TCGA-CU-A3YL-01 8 99468130 99468130 C T STK3 Silent p.A500A 0.45 TCGA-CU-A3YL-01 9 102590462 102590462 G A NR4A3 Silent p.E57E 0.33 TCGA-CU-A3YL-01 9 115931520 115931520 G A FKBP15 Missense_Mutation p.H1157Y 0.43 tolerated_low_confidence(0.06) benign(0.001) TCGA-CU-A3YL-01 9 119461874 119461874 G A TRIM32 Missense_Mutation p.C618Y 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-CU-A3YL-01 9 130705432 130705432 G A FAM102A 3'UTR 0.33 TCGA-CU-A3YL-01 9 131396647 131396647 G A WDR34 Silent p.S410S 0.31 TCGA-CU-A3YL-01 9 131768567 131768567 C G NUP188 Missense_Mutation p.Q1665E 0.29 deleterious(0) probably_damaging(0.977) TCGA-CU-A3YL-01 9 132869776 132869779 TCAA - GPR107 Frame_Shift_Del p.I423Dfs*25 0.60 TCGA-CU-A3YL-01 9 140057342 140057342 G C GRIN1 Missense_Mutation p.Q707H 0.38 tolerated(0.07) benign(0.093) TCGA-CU-A3YL-01 9 140695358 140695358 C T EHMT1 Silent p.I878I 0.16 TCGA-CU-A3YL-01 9 37537289 37537289 C G FBXO10 Missense_Mutation p.E413Q 0.91 deleterious(0.02) possibly_damaging(0.825) TCGA-CU-A3YL-01 9 87482169 87482169 G A NTRK2 Missense_Mutation p.V486I 0.36 deleterious(0.01) possibly_damaging(0.852) TCGA-CU-A3YL-01 9 88938224 88938224 C G ZCCHC6 Missense_Mutation p.G814A 0.32 deleterious(0.03) benign(0.012) TCGA-CU-A3YL-01 X 118228014 118228014 C G KIAA1210 Missense_Mutation p.E438Q 0.86 tolerated(0.18) benign(0.197) TCGA-CU-A3YL-01 X 3238723 3238723 G C MXRA5 Nonsense_Mutation p.S1668* 0.81 TCGA-CU-A3YL-01 X 47062396 47062396 G A UBA1 Missense_Mutation p.E430K 0.89 deleterious(0) probably_damaging(0.987) TCGA-CU-A3YL-01 X 48825780 48825780 A G KCND1 Missense_Mutation p.F300S 0.40 deleterious(0) probably_damaging(0.996) TCGA-CU-A3YL-01 X 54955643 54955643 C G TRO Missense_Mutation p.S829C 0.87 tolerated(0.1) unknown(0) TCGA-CU-A3YL-01 X 71493144 71493144 C T RPS4X Missense_Mutation p.V210M 0.92 tolerated(0.11) benign(0.205) TCGA-CU-A5W6-01 10 101445571 101445571 G A ENTPD7 Missense_Mutation p.D191N 0.28 tolerated(0.14) benign(0.209) TCGA-CU-A5W6-01 10 11207490 11207490 C G CELF2 Nonsense_Mutation p.S39* 0.22 TCGA-CU-A5W6-01 10 11805396 11805396 C G ECHDC3 Missense_Mutation p.F255L 0.10 tolerated(0.2) benign(0.196) TCGA-CU-A5W6-01 10 12219889 12219889 G A NUDT5 Silent p.V64V 0.34 TCGA-CU-A5W6-01 10 124697411 124697411 C T C10orf88 Missense_Mutation p.E305K 0.39 tolerated(0.12) probably_damaging(0.997) TCGA-CU-A5W6-01 10 25304960 25304960 C T ENKUR 5'UTR 0.58 TCGA-CU-A5W6-01 10 29815962 29815962 G C SVIL Missense_Mutation p.S757C 0.20 deleterious(0.04) possibly_damaging(0.682) TCGA-CU-A5W6-01 10 70332828 70332828 C G TET1 Missense_Mutation p.Q245E 0.27 tolerated(0.07) benign(0.162) TCGA-CU-A5W6-01 10 70332900 70332900 C G TET1 Missense_Mutation p.Q269E 0.29 deleterious(0) probably_damaging(0.985) TCGA-CU-A5W6-01 10 70666665 70666665 C G DDX50 Missense_Mutation p.L96V 0.19 tolerated(0.27) benign(0.135) TCGA-CU-A5W6-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.27 TCGA-CU-A5W6-01 11 105481796 105481796 G A GRIA4 Silent p.P24P 0.26 TCGA-CU-A5W6-01 11 110035867 110035867 G C ZC3H12C Missense_Mutation p.R686T 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-CU-A5W6-01 11 133790076 133790076 G A IGSF9B Missense_Mutation p.R1182W 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CU-A5W6-01 11 212753 212753 G A RIC8A Missense_Mutation p.E408K 0.44 deleterious(0) probably_damaging(0.967) TCGA-CU-A5W6-01 11 212959 212959 G A RIC8A Missense_Mutation p.E451K 0.59 deleterious(0) probably_damaging(0.929) TCGA-CU-A5W6-01 11 28113000 28113000 C G KIF18A Missense_Mutation p.D182H 0.46 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 11 31086619 31086619 G T DCDC1 Missense_Mutation p.H794N 0.57 tolerated_low_confidence(0.21) benign(0.005) TCGA-CU-A5W6-01 11 47445700 47445700 G A PSMC3 Missense_Mutation p.T163M 0.48 tolerated(0.08) possibly_damaging(0.454) TCGA-CU-A5W6-01 11 47593116 47593116 G C PTPMT1 Missense_Mutation p.E181Q 0.18 tolerated(0.51) benign(0.046) TCGA-CU-A5W6-01 11 55579442 55579442 C T OR5L1 Missense_Mutation p.P167L 0.08 tolerated(0.08) benign(0.045) TCGA-CU-A5W6-01 11 55595171 55595171 C T OR5L2 Silent p.H159H 0.21 TCGA-CU-A5W6-01 11 55595173 55595173 C T OR5L2 Missense_Mutation p.S160L 0.20 tolerated(0.9) benign(0) TCGA-CU-A5W6-01 11 55595176 55595176 C G OR5L2 Missense_Mutation p.S161C 0.20 tolerated(1) benign(0) TCGA-CU-A5W6-01 11 55681265 55681265 G A OR5W2 Missense_Mutation p.S265F 0.27 deleterious(0.01) possibly_damaging(0.701) TCGA-CU-A5W6-01 11 56258311 56258311 G A OR5M8 Missense_Mutation p.A179V 0.26 tolerated(0.09) possibly_damaging(0.721) TCGA-CU-A5W6-01 11 62294417 62294417 C G AHNAK Missense_Mutation p.G2491A 0.37 possibly_damaging(0.899) TCGA-CU-A5W6-01 11 64119635 64119635 G C CCDC88B Missense_Mutation p.E1045Q 0.24 tolerated(0.3) probably_damaging(0.998) TCGA-CU-A5W6-01 11 64695312 64695312 G A PPP2R5B Silent p.E145E 0.34 TCGA-CU-A5W6-01 11 65113142 65113142 G T DPF2 Nonsense_Mutation p.G215* 0.31 TCGA-CU-A5W6-01 11 65113143 65113143 G T DPF2 Missense_Mutation p.G215V 0.31 deleterious(0) probably_damaging(0.983) TCGA-CU-A5W6-01 11 65486200 65486200 G C KAT5 Missense_Mutation p.E468D 0.25 tolerated(0.14) benign(0.017) TCGA-CU-A5W6-01 11 67077411 67077411 C T SSH3 Nonsense_Mutation p.Q461* 0.25 TCGA-CU-A5W6-01 11 67079430 67079430 C T SSH3 3'UTR 0.45 TCGA-CU-A5W6-01 11 67079469 67079469 C A SSH3 3'UTR 0.33 TCGA-CU-A5W6-01 11 77409626 77409626 G A RSF1 Missense_Mutation p.S874L 0.36 tolerated(0.1) benign(0.01) TCGA-CU-A5W6-01 11 92086749 92086749 G A FAT3 Missense_Mutation p.V491I 0.26 benign(0.03) TCGA-CU-A5W6-01 12 108686401 108686401 C G CMKLR1 Missense_Mutation p.K113N 0.29 deleterious(0) probably_damaging(0.986) TCGA-CU-A5W6-01 12 125626720 125626720 C G AACS Missense_Mutation p.S655W 0.25 deleterious(0.05) benign(0.021) TCGA-CU-A5W6-01 12 14976461 14976461 G A C12orf60 Missense_Mutation p.E198K 0.48 tolerated(0.06) benign(0.158) TCGA-CU-A5W6-01 12 41327626 41327626 G A CNTN1 Missense_Mutation p.E311K 0.41 tolerated(0.06) possibly_damaging(0.752) TCGA-CU-A5W6-01 12 41374708 41374708 C A CNTN1 Intron 0.48 TCGA-CU-A5W6-01 12 49165644 49165644 T C ADCY6 Missense_Mutation p.N967S 0.38 tolerated(0.13) possibly_damaging(0.521) TCGA-CU-A5W6-01 12 49433723 49433738 TAGTGGGGACAGCCCA - KMT2D Frame_Shift_Del p.G2606Afs*80 0.49 TCGA-CU-A5W6-01 12 51318782 51318782 G T METTL7A 5'UTR 0.30 TCGA-CU-A5W6-01 12 53608320 53608321 - A RARG Frame_Shift_Ins p.S183Efs*50 0.21 TCGA-CU-A5W6-01 12 66856755 66856755 C T GRIP1 Missense_Mutation p.E331K 0.13 tolerated(0.12) probably_damaging(0.996) TCGA-CU-A5W6-01 13 28886179 28886179 G A FLT1 Missense_Mutation p.A1148V 0.12 tolerated(0.07) benign(0.05) TCGA-CU-A5W6-01 13 28895667 28895667 A G FLT1 Missense_Mutation p.V1036A 0.45 deleterious(0) probably_damaging(0.912) TCGA-CU-A5W6-01 13 39263356 39263356 C T FREM2 Silent p.L625L 0.38 TCGA-CU-A5W6-01 13 46728987 46728987 C T LCP1 Missense_Mutation p.D176N 0.46 deleterious(0) probably_damaging(0.964) TCGA-CU-A5W6-01 13 52657481 52657481 G C NEK5 Nonsense_Mutation p.S496* 0.40 TCGA-CU-A5W6-01 13 73505317 73505317 G C PIBF1 Missense_Mutation p.R582T 0.18 deleterious(0) benign(0.265) TCGA-CU-A5W6-01 14 68246973 68246973 C G ZFYVE26 Missense_Mutation p.M1553I 0.33 tolerated(0.57) benign(0.003) TCGA-CU-A5W6-01 14 74179296 74179296 C T PNMA1 Silent p.L349L 0.23 TCGA-CU-A5W6-01 14 77493065 77493065 C G IRF2BPL Silent p.L357L 0.29 TCGA-CU-A5W6-01 14 78197355 78197355 C T SNW1 Missense_Mutation p.G337R 0.27 deleterious(0) possibly_damaging(0.761) TCGA-CU-A5W6-01 14 88459483 88459483 G T GALC Missense_Mutation p.S9Y 0.38 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-CU-A5W6-01 15 28259945 28259945 C T OCA2 Missense_Mutation p.V341I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-CU-A5W6-01 15 28519521 28519521 G A HERC2 Missense_Mutation p.S239L 0.43 benign(0.002) TCGA-CU-A5W6-01 15 33951982 33951982 T A RYR3 Missense_Mutation p.F1457Y 0.42 possibly_damaging(0.767) TCGA-CU-A5W6-01 15 45399046 45399046 G A DUOX2 Silent p.L605L 0.28 TCGA-CU-A5W6-01 15 63594548 63594548 C T APH1B Silent p.F161F 0.32 TCGA-CU-A5W6-01 15 64418350 64418350 G A SNX1 Missense_Mutation p.E195K 0.33 deleterious(0.03) possibly_damaging(0.656) TCGA-CU-A5W6-01 15 68612528 68612528 G C ITGA11 Missense_Mutation p.Q871E 0.31 tolerated(0.06) benign(0.063) TCGA-CU-A5W6-01 15 71125195 71125195 A G LARP6 Silent p.F224F 0.25 TCGA-CU-A5W6-01 15 78213884 78213884 C T RP11-114H24.7 Intron 0.31 TCGA-CU-A5W6-01 15 86122824 86122824 G C AKAP13 Missense_Mutation p.E509Q 0.07 tolerated_low_confidence(0.09) benign(0.387) TCGA-CU-A5W6-01 15 89388875 89388875 G A ACAN Silent p.V397V 0.28 TCGA-CU-A5W6-01 16 15729912 15729912 G A KIAA0430 Silent p.I144I 0.19 TCGA-CU-A5W6-01 16 15730085 15730085 G A KIAA0430 Nonsense_Mutation p.Q87* 0.19 TCGA-CU-A5W6-01 16 1837699 1837699 C T NUBP2 Missense_Mutation p.S119F 0.28 deleterious(0) possibly_damaging(0.866) TCGA-CU-A5W6-01 16 4796971 4796971 G C C16orf71 Missense_Mutation p.E409Q 0.50 tolerated(0.07) probably_damaging(0.986) TCGA-CU-A5W6-01 16 57507884 57507884 C T DOK4 Missense_Mutation p.V223I 0.25 deleterious(0) probably_damaging(0.995) TCGA-CU-A5W6-01 16 82892035 82892035 C G CDH13 Missense_Mutation p.I85M 0.34 deleterious(0.05) possibly_damaging(0.826) TCGA-CU-A5W6-01 16 830827 830827 G A MSLNL Silent p.F58F 0.18 TCGA-CU-A5W6-01 16 84438775 84438775 G C ATP2C2 Missense_Mutation p.Q84H 0.19 tolerated(0.23) probably_damaging(0.999) TCGA-CU-A5W6-01 16 88052191 88052191 G A BANP Silent p.E263E 0.15 TCGA-CU-A5W6-01 17 15984008 15984008 G A NCOR1 Nonsense_Mutation p.Q1071* 0.43 TCGA-CU-A5W6-01 17 27208921 27208921 G C FLOT2 Missense_Mutation p.I275M 0.22 deleterious(0.04) possibly_damaging(0.863) TCGA-CU-A5W6-01 17 29163002 29163002 G C ATAD5 Missense_Mutation p.E635Q 0.26 tolerated(0.22) benign(0.022) TCGA-CU-A5W6-01 17 31322621 31322621 C T SPACA3 Silent p.L77L 0.36 TCGA-CU-A5W6-01 17 33769001 33769001 C A SLFN13 Missense_Mutation p.M501I 0.13 tolerated(0.57) benign(0.004) TCGA-CU-A5W6-01 17 36476627 36476627 C T MRPL45 Silent p.I212I 0.13 TCGA-CU-A5W6-01 17 36708255 36708255 G T SRCIN1 Missense_Mutation p.P865H 0.18 deleterious(0.01) possibly_damaging(0.631) TCGA-CU-A5W6-01 17 38447539 38447539 G C CDC6 Missense_Mutation p.Q136H 0.21 tolerated(0.21) benign(0.001) TCGA-CU-A5W6-01 17 38447572 38447572 G C CDC6 Silent p.V147V 0.19 TCGA-CU-A5W6-01 17 38449839 38449839 G A CDC6 Missense_Mutation p.M264I 0.20 tolerated(0.47) benign(0.002) TCGA-CU-A5W6-01 17 38548350 38548350 C G TOP2A Missense_Mutation p.E1368Q 0.23 tolerated(0.23) benign(0.005) TCGA-CU-A5W6-01 17 44076766 44076766 C T STH Nonsense_Mutation p.Q41* 0.44 TCGA-CU-A5W6-01 17 46799841 46799841 G A PRAC1 5'UTR 0.35 TCGA-CU-A5W6-01 17 48559722 48559722 G A RSAD1 Missense_Mutation p.D249N 0.40 tolerated(0.12) benign(0.041) TCGA-CU-A5W6-01 17 48559773 48559773 G A RSAD1 Missense_Mutation p.E266K 0.41 tolerated(0.35) benign(0.007) TCGA-CU-A5W6-01 17 48677060 48677060 C T CACNA1G Missense_Mutation p.T1177I 0.27 tolerated(0.39) benign(0.197) TCGA-CU-A5W6-01 17 56051894 56051894 C T VEZF1 Missense_Mutation p.M502I 0.22 deleterious_low_confidence(0) benign(0.403) TCGA-CU-A5W6-01 17 56584534 56584534 G A MTMR4 Missense_Mutation p.S271F 0.22 deleterious(0.02) benign(0.293) TCGA-CU-A5W6-01 17 56619989 56619989 A G C17orf47 Missense_Mutation p.L520P 0.20 deleterious(0) probably_damaging(0.955) TCGA-CU-A5W6-01 17 57126654 57126654 G A TRIM37 Missense_Mutation p.A472V 0.26 tolerated_low_confidence(0.18) benign(0.021) TCGA-CU-A5W6-01 17 61615962 61615962 C G KCNH6 Silent p.L631L 0.27 TCGA-CU-A5W6-01 17 61902046 61902046 T A FTSJ3 Missense_Mutation p.I290L 0.36 tolerated(0.23) benign(0.044) TCGA-CU-A5W6-01 17 71196744 71196744 C G COG1 Silent p.L370L 0.28 TCGA-CU-A5W6-01 17 73501658 73501658 G A CASKIN2 Missense_Mutation p.R304W 0.22 deleterious(0) probably_damaging(0.995) TCGA-CU-A5W6-01 17 74060234 74060234 C G SRP68 Silent p.L128L 0.25 TCGA-CU-A5W6-01 17 74075326 74075326 C G ZACN 5'UTR 0.52 TCGA-CU-A5W6-01 17 74271917 74271917 G A QRICH2 Missense_Mutation p.S1656L 0.19 tolerated(1) benign(0.001) TCGA-CU-A5W6-01 18 13826346 13826346 C T MC5R Silent p.F194F 0.37 TCGA-CU-A5W6-01 18 8824761 8824761 G A SOGA2 Missense_Mutation p.E1085K 0.13 tolerated(0.06) possibly_damaging(0.759) TCGA-CU-A5W6-01 18 8824763 8824763 G A SOGA2 Silent p.E1085E 0.13 TCGA-CU-A5W6-01 19 10663755 10663755 G A ATG4D 3'UTR 0.35 TCGA-CU-A5W6-01 19 11213450 11213450 G A LDLR Missense_Mutation p.E101K 0.25 deleterious(0) probably_damaging(0.985) TCGA-CU-A5W6-01 19 11892651 11892651 A G ZNF441 Missense_Mutation p.Y671C 0.35 deleterious(0.01) possibly_damaging(0.524) TCGA-CU-A5W6-01 19 12945627 12945627 G T RTBDN Nonsense_Mutation p.S17* 0.39 TCGA-CU-A5W6-01 19 13135864 13135864 G A NFIX Silent p.L19L 0.33 TCGA-CU-A5W6-01 19 14517366 14517366 G C CD97 Missense_Mutation p.R682T 0.44 tolerated(1) benign(0.004) TCGA-CU-A5W6-01 19 1453084 1453084 G A APC2 Silent p.E28E 0.36 TCGA-CU-A5W6-01 19 17534562 17534562 G A MVB12A Silent p.R198R 0.27 TCGA-CU-A5W6-01 19 17953149 17953149 G A JAK3 Silent p.I279I 0.44 TCGA-CU-A5W6-01 19 17953365 17953365 G T JAK3 Missense_Mutation p.F207L 0.53 tolerated(0.26) probably_damaging(0.997) TCGA-CU-A5W6-01 19 17953940 17953940 G A JAK3 Silent p.L154L 0.20 TCGA-CU-A5W6-01 19 17953978 17953978 G A JAK3 Missense_Mutation p.R142C 0.20 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 19 17954210 17954210 G C JAK3 Silent p.V133V 0.36 TCGA-CU-A5W6-01 19 17954684 17954684 G C JAK3 Silent p.L70L 0.37 TCGA-CU-A5W6-01 19 3586817 3586817 C T GIPC3 Silent p.I139I 0.27 TCGA-CU-A5W6-01 19 36605697 36605697 C T POLR2I Intron 0.32 TCGA-CU-A5W6-01 19 3748006 3748006 C T TJP3 Missense_Mutation p.S855L 0.23 deleterious(0) probably_damaging(0.999) TCGA-CU-A5W6-01 19 43259286 43259286 G A PSG8 Missense_Mutation p.P281L 0.20 tolerated(0.12) benign(0.125) TCGA-CU-A5W6-01 19 43414797 43414797 T C PSG6 Missense_Mutation p.Y214C 0.30 deleterious(0) probably_damaging(0.999) TCGA-CU-A5W6-01 19 43969688 43969688 C T LYPD3 Missense_Mutation p.M12I 0.33 deleterious(0.03) benign(0.002) TCGA-CU-A5W6-01 19 45574867 45574867 C T ZNF296 Missense_Mutation p.E474K 0.33 tolerated_low_confidence(0.12) benign(0.001) TCGA-CU-A5W6-01 19 45783664 45783664 G A MARK4 Missense_Mutation p.E347K 0.27 deleterious(0.04) benign(0.382) TCGA-CU-A5W6-01 19 45783673 45783673 G C MARK4 Missense_Mutation p.E350Q 0.27 deleterious(0.01) benign(0.074) TCGA-CU-A5W6-01 19 45997882 45997882 G A RTN2 Missense_Mutation p.T154M 0.31 deleterious_low_confidence(0) benign(0.136) TCGA-CU-A5W6-01 19 46518680 46518680 G A CCDC61 Silent p.K280K 0.42 TCGA-CU-A5W6-01 19 47502654 47502654 C T ARHGAP35 Missense_Mutation p.S1377F 0.21 deleterious(0.03) benign(0.006) TCGA-CU-A5W6-01 19 49107002 49107002 G A FAM83E Missense_Mutation p.R309C 0.20 tolerated(0.14) benign(0.405) TCGA-CU-A5W6-01 19 49844635 49844635 G C TEAD2 Silent p.V434V 0.30 TCGA-CU-A5W6-01 19 49912476 49912476 G C CCDC155 Missense_Mutation p.R361T 0.31 tolerated(0.2) benign(0.006) TCGA-CU-A5W6-01 19 49965835 49965835 C T ALDH16A1 Silent p.L307L 0.39 TCGA-CU-A5W6-01 19 50335360 50335360 G T MED25 Missense_Mutation p.K440N 0.24 tolerated(0.87) benign(0.216) TCGA-CU-A5W6-01 19 50335588 50335588 G C MED25 Silent p.R466R 0.29 TCGA-CU-A5W6-01 19 5110722 5110722 C T KDM4B Silent p.G336G 0.08 TCGA-CU-A5W6-01 19 52003566 52003566 C T SIGLEC12 Intron 0.29 TCGA-CU-A5W6-01 19 52023435 52023439 CTCAT - SIGLEC6 Frame_Shift_Del p.D420Afs*24 0.34 TCGA-CU-A5W6-01 19 53015515 53015515 A G ZNF578 3'Flank 0.31 TCGA-CU-A5W6-01 19 53994141 53994141 G A ZNF813 Missense_Mutation p.E219K 0.32 deleterious(0.03) benign(0.159) TCGA-CU-A5W6-01 19 56047643 56047643 C T SBK2 Missense_Mutation p.E7K 0.29 tolerated_low_confidence(0.27) unknown(0) TCGA-CU-A5W6-01 19 56477742 56477742 C G NLRP8 Missense_Mutation p.L793V 0.38 tolerated(0.07) benign(0.05) TCGA-CU-A5W6-01 19 9009269 9009269 G C MUC16 Silent p.L13068L 0.18 TCGA-CU-A5W6-01 19 9009298 9009298 G A MUC16 Silent p.L13059L 0.20 TCGA-CU-A5W6-01 1 13669152 13669152 G A PRAMEF14 Missense_Mutation p.A393V 0.20 tolerated(1) benign(0.139) TCGA-CU-A5W6-01 1 144922570 144922570 T C PDE4DIP Silent p.Q279Q 0.05 TCGA-CU-A5W6-01 1 151546838 151546838 C T TUFT1 Silent p.V229V 0.24 TCGA-CU-A5W6-01 1 152484381 152484381 G A LCE5A 3'UTR 0.44 TCGA-CU-A5W6-01 1 152733475 152733475 G A KPRP Missense_Mutation p.E471K 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.801) TCGA-CU-A5W6-01 1 154295554 154295554 C T AQP10 Missense_Mutation p.S110F 0.23 deleterious(0) possibly_damaging(0.797) TCGA-CU-A5W6-01 1 156779144 156779144 C T SH2D2A Missense_Mutation p.E295K 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-CU-A5W6-01 1 161071933 161071933 C T PFDN2 Missense_Mutation p.D65N 0.14 tolerated(0.07) possibly_damaging(0.612) TCGA-CU-A5W6-01 1 179520471 179520471 A G NPHS2 Missense_Mutation p.L330P 0.62 deleterious(0) probably_damaging(0.99) TCGA-CU-A5W6-01 1 184688343 184688343 G C EDEM3 Missense_Mutation p.H372D 0.16 deleterious(0) probably_damaging(0.998) TCGA-CU-A5W6-01 1 192545939 192545939 C T RGS1 Missense_Mutation p.S85F 0.12 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 1 200376491 200376491 G C ZNF281 Missense_Mutation p.F781L 0.11 deleterious(0.01) benign(0.079) TCGA-CU-A5W6-01 1 200978081 200978081 T C KIF21B Splice_Site p.X89_splice 0.13 TCGA-CU-A5W6-01 1 223285053 223285053 G C TLR5 Missense_Mutation p.L441V 0.28 tolerated(0.23) benign(0.006) TCGA-CU-A5W6-01 1 22919901 22919901 G A EPHA8 Silent p.P466P 0.20 TCGA-CU-A5W6-01 1 230903427 230903427 G C CAPN9 Missense_Mutation p.R226T 0.21 deleterious(0.02) probably_damaging(0.935) TCGA-CU-A5W6-01 1 26800009 26800009 G T HMGN2 Silent p.V17V 0.23 TCGA-CU-A5W6-01 1 27092748 27092748 G A ARID1A Missense_Mutation p.M923I 0.41 unknown(0) TCGA-CU-A5W6-01 1 36215397 36215397 G C CLSPN Missense_Mutation p.L682V 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-CU-A5W6-01 1 36636770 36636770 C T MAP7D1 Missense_Mutation p.P82L 0.41 benign(0.006) TCGA-CU-A5W6-01 1 64680517 64680517 T G UBE2U Missense_Mutation p.V120G 0.15 tolerated(0.09) benign(0.209) TCGA-CU-A5W6-01 1 64680524 64680524 G A UBE2U Silent p.E122E 0.16 TCGA-CU-A5W6-01 1 93202150 93202150 G T EVI5 Missense_Mutation p.S29Y 0.32 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-CU-A5W6-01 20 33464448 33464448 G C ACSS2 5'UTR 0.25 TCGA-CU-A5W6-01 20 44462960 44462960 G A SNX21 Missense_Mutation p.D48N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-CU-A5W6-01 20 47276486 47276486 C T PREX1 Missense_Mutation p.V618M 0.35 deleterious(0.03) benign(0.291) TCGA-CU-A5W6-01 20 5904012 5904012 G C CHGB Missense_Mutation p.E408Q 0.29 tolerated(0.14) benign(0.091) TCGA-CU-A5W6-01 20 61834958 61834958 C T YTHDF1 Missense_Mutation p.G112R 0.32 deleterious(0.03) probably_damaging(0.938) TCGA-CU-A5W6-01 21 31874370 31874370 G A KRTAP19-5 Silent p.Y13Y 0.36 TCGA-CU-A5W6-01 21 46011633 46011633 C T KRTAP10-6 Missense_Mutation p.E245K 0.21 tolerated(0.73) unknown(0) TCGA-CU-A5W6-01 22 24236670 24236670 G A MIF Missense_Mutation p.M3I 0.32 tolerated(0.37) benign(0.004) TCGA-CU-A5W6-01 22 30691728 30691728 G T TBC1D10A Missense_Mutation p.H181Q 0.29 deleterious(0.01) possibly_damaging(0.527) TCGA-CU-A5W6-01 22 31500567 31500568 - A SMTN 3'UTR 0.33 TCGA-CU-A5W6-01 22 39388462 39388462 C T APOBEC3B 3'UTR 0.34 TCGA-CU-A5W6-01 22 46774567 46774567 G C CELSR1 Missense_Mutation p.S2435C 0.28 tolerated(0.17) probably_damaging(0.967) TCGA-CU-A5W6-01 22 46792606 46792606 C A CELSR1 Silent p.L1913L 0.36 TCGA-CU-A5W6-01 2 105705511 105705512 - A MRPS9 Frame_Shift_Ins p.T189Nfs*14 0.18 TCGA-CU-A5W6-01 2 1094084 1094084 G T SNTG2 Nonsense_Mutation p.E105* 0.38 TCGA-CU-A5W6-01 2 128178930 128178930 G C PROC Missense_Mutation p.E48Q 0.06 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 2 136071137 136071137 C T ZRANB3 Missense_Mutation p.M296I 0.40 deleterious(0.04) benign(0.033) TCGA-CU-A5W6-01 2 136071154 136071154 C G ZRANB3 Missense_Mutation p.E291Q 0.36 tolerated(0.14) possibly_damaging(0.644) TCGA-CU-A5W6-01 2 157406139 157406139 G A GPD2 Silent p.R227R 0.22 TCGA-CU-A5W6-01 2 157406142 157406142 G A GPD2 Missense_Mutation p.M228I 0.24 deleterious(0) possibly_damaging(0.905) TCGA-CU-A5W6-01 2 159517867 159517867 G A PKP4 Missense_Mutation p.E706K 0.33 deleterious(0) possibly_damaging(0.507) TCGA-CU-A5W6-01 2 178986032 178986032 A G RBM45 Missense_Mutation p.I267V 0.43 deleterious(0.02) benign(0.223) TCGA-CU-A5W6-01 2 179643746 179643746 G A TTN Missense_Mutation p.L1355F 0.34 TCGA-CU-A5W6-01 2 197987389 197987389 C T ANKRD44 Silent p.L226L 0.34 TCGA-CU-A5W6-01 2 198265453 198265453 C T SF3B1 Missense_Mutation p.E902K 0.32 deleterious(0.01) probably_damaging(0.926) TCGA-CU-A5W6-01 2 211301003 211301003 G T LANCL1 Silent p.A329A 0.09 TCGA-CU-A5W6-01 2 231379921 231379921 G C SP100 Intron 0.49 TCGA-CU-A5W6-01 2 26029193 26029193 G A ASXL2 Missense_Mutation p.L53F 0.25 deleterious(0) probably_damaging(0.991) TCGA-CU-A5W6-01 2 27600518 27600518 G T ZNF513 Missense_Mutation p.S507Y 0.31 deleterious(0.02) possibly_damaging(0.608) TCGA-CU-A5W6-01 2 40657143 40657143 G C SLC8A1 Missense_Mutation p.S93C 0.23 deleterious(0) probably_damaging(0.998) TCGA-CU-A5W6-01 2 73717352 73717352 G C ALMS1 Missense_Mutation p.E2755Q 0.16 possibly_damaging(0.693) TCGA-CU-A5W6-01 3 10362820 10362820 G A SEC13 5'UTR 0.50 TCGA-CU-A5W6-01 3 10491189 10491189 G T ATP2B2 Missense_Mutation p.N13K 0.29 tolerated_low_confidence(0.11) probably_damaging(0.985) TCGA-CU-A5W6-01 3 128711982 128711982 C G KIAA1257 Missense_Mutation p.E56Q 0.29 tolerated(0.06) possibly_damaging(0.701) TCGA-CU-A5W6-01 3 133478068 133478068 G A TF Silent p.L366L 0.29 TCGA-CU-A5W6-01 3 138478044 138478044 G A PIK3CB Missense_Mutation p.R48W 0.35 tolerated(0.05) probably_damaging(0.992) TCGA-CU-A5W6-01 3 138665213 138665213 C T FOXL2 Missense_Mutation p.E118K 0.54 deleterious(0) possibly_damaging(0.874) TCGA-CU-A5W6-01 3 138665358 138665358 C G FOXL2 Missense_Mutation p.E69D 0.28 tolerated(0.18) benign(0.033) TCGA-CU-A5W6-01 3 140409905 140409905 C T TRIM42 Silent p.L652L 0.30 TCGA-CU-A5W6-01 3 170108171 170108171 C T SKIL Silent p.I530I 0.22 TCGA-CU-A5W6-01 3 178936094 178936094 C A PIK3CA Missense_Mutation p.Q546K 0.40 deleterious(0.03) probably_damaging(0.952) TCGA-CU-A5W6-01 3 182987589 182987589 G C B3GNT5 Translation_Start_Site p.M1? 0.26 tolerated_low_confidence(0.6) benign(0) TCGA-CU-A5W6-01 3 182987909 182987909 G C B3GNT5 Missense_Mutation p.R108T 0.36 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 3 183388884 183388884 C T KLHL24 Silent p.S429S 0.26 TCGA-CU-A5W6-01 3 185146362 185146362 A G MAP3K13 5'UTR 0.28 TCGA-CU-A5W6-01 3 190026116 190026116 G A CLDN1 Missense_Mutation p.P196S 0.36 tolerated(0.63) unknown(0) TCGA-CU-A5W6-01 3 27204206 27204206 G A NEK10 Missense_Mutation p.S952L 0.38 deleterious(0.03) benign(0.064) TCGA-CU-A5W6-01 3 28557058 28557058 A G ZCWPW2 Missense_Mutation p.K244E 0.19 tolerated(0.06) benign(0.032) TCGA-CU-A5W6-01 3 3081930 3081930 C T CNTN4 Silent p.T791T 0.30 TCGA-CU-A5W6-01 3 39450193 39450193 T C RPSA Missense_Mutation p.I77T 0.38 tolerated(0.07) possibly_damaging(0.816) TCGA-CU-A5W6-01 3 42845729 42845729 C T HIGD1A 5'UTR 0.37 TCGA-CU-A5W6-01 3 46000914 46000914 G A FYCO1 Silent p.F1186F 0.39 TCGA-CU-A5W6-01 3 46945130 46945130 G A PTH1R Nonsense_Mutation p.W589* 0.29 TCGA-CU-A5W6-01 3 49450518 49450518 G A TCTA Missense_Mutation p.D82N 0.23 tolerated(0.17) probably_damaging(0.99) TCGA-CU-A5W6-01 3 51747077 51747077 G T GRM2 Nonsense_Mutation p.E347* 0.13 TCGA-CU-A5W6-01 3 54871248 54871248 G A CACNA2D3 Silent p.Q487Q 0.28 TCGA-CU-A5W6-01 3 98217295 98217295 C A OR5K2 Missense_Mutation p.F257L 0.30 tolerated(0.19) benign(0.25) TCGA-CU-A5W6-01 3 9976246 9976246 C T CRELD1 Nonsense_Mutation p.Q42* 0.32 TCGA-CU-A5W6-01 4 10084784 10084784 G A WDR1 Missense_Mutation p.T353M 0.10 deleterious(0) benign(0.264) TCGA-CU-A5W6-01 4 103822465 103822465 C T SLC9B1 Missense_Mutation p.E453K 0.16 deleterious(0) probably_damaging(0.937) TCGA-CU-A5W6-01 4 106888528 106888528 C A NPNT Missense_Mutation p.A540D 0.29 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 4 153549622 153549622 C A TMEM154 3'UTR 0.16 TCGA-CU-A5W6-01 4 153549625 153549625 C T TMEM154 3'UTR 0.16 TCGA-CU-A5W6-01 4 167022047 167022047 A - TLL1 3'UTR 0.27 TCGA-CU-A5W6-01 4 20530628 20530628 C T SLIT2 Missense_Mutation p.P507S 0.43 deleterious(0) probably_damaging(1) TCGA-CU-A5W6-01 4 2930073 2930073 C T ADD1 Silent p.P710P 0.27 TCGA-CU-A5W6-01 4 39230197 39230197 G C WDR19 Missense_Mutation p.Q623H 0.27 tolerated(0.14) benign(0.06) TCGA-CU-A5W6-01 4 39839765 39839765 C T PDS5A Missense_Mutation p.V1241I 0.39 tolerated_low_confidence(0.44) benign(0.038) TCGA-CU-A5W6-01 4 48622718 48622718 G A FRYL Silent p.R84R 0.19 TCGA-CU-A5W6-01 4 780459 780459 C T CPLX1 Missense_Mutation p.E79K 0.06 deleterious(0.02) possibly_damaging(0.747) TCGA-CU-A5W6-01 5 111519792 111519792 A T EPB41L4A Missense_Mutation p.W515R 0.28 deleterious(0) probably_damaging(0.987) TCGA-CU-A5W6-01 5 123979266 123979266 C A ZNF608 Nonsense_Mutation p.E1412* 0.24 TCGA-CU-A5W6-01 5 139918598 139918598 A G ANKHD1 Missense_Mutation p.N2500S 0.24 benign(0.116) TCGA-CU-A5W6-01 5 139943359 139943359 C G APBB3 Missense_Mutation p.G64A 0.26 tolerated(0.33) possibly_damaging(0.681) TCGA-CU-A5W6-01 5 140257163 140257163 C A PCDHA12 Silent p.I702I 0.24 TCGA-CU-A5W6-01 5 140347071 140347071 G A PCDHAC2 Silent p.T240T 0.33 TCGA-CU-A5W6-01 5 140475031 140475031 C T PCDHB2 Silent p.G219G 0.33 TCGA-CU-A5W6-01 5 140482020 140482020 C T PCDHB3 Missense_Mutation p.S596L 0.40 deleterious_low_confidence(0.01) benign(0.321) TCGA-CU-A5W6-01 5 140516525 140516525 C T PCDHB5 Silent p.V503V 0.26 TCGA-CU-A5W6-01 5 150512664 150512664 G C ANXA6 Missense_Mutation p.L211V 0.47 deleterious(0) probably_damaging(0.998) TCGA-CU-A5W6-01 5 159546011 159546011 C T PWWP2A Missense_Mutation p.E129K 0.24 tolerated_low_confidence(0.61) benign(0.01) TCGA-CU-A5W6-01 5 159546012 159546012 C T PWWP2A Silent p.E128E 0.24 TCGA-CU-A5W6-01 5 39203000 39203000 G A FYB Silent p.F31F 0.28 TCGA-CU-A5W6-01 5 43412358 43412358 C T CCL28 Missense_Mutation p.E21K 0.35 tolerated(0.09) benign(0.014) TCGA-CU-A5W6-01 5 80256563 80256563 G C RASGRF2 Missense_Mutation p.Q2H 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CU-A5W6-01 6 127775226 127775226 C G SOGA3 3'UTR 0.15 TCGA-CU-A5W6-01 6 148865826 148865826 G A SASH1 Missense_Mutation p.G1074S 0.41 tolerated_low_confidence(0.14) possibly_damaging(0.599) TCGA-CU-A5W6-01 6 158923996 158923996 G C TULP4 Missense_Mutation p.E1101Q 0.38 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-CU-A5W6-01 6 43498484 43498484 G A XPO5 Silent p.L873L 0.49 TCGA-CU-A5W6-01 6 44921139 44921139 G A SUPT3H Missense_Mutation p.L248F 0.24 tolerated(0.12) probably_damaging(1) TCGA-CU-A5W6-01 6 52957257 52957257 G A FBXO9 Silent p.L238L 0.24 TCGA-CU-A5W6-01 6 71232231 71232231 G A FAM135A Missense_Mutation p.E349K 0.34 deleterious(0.01) benign(0.246) TCGA-CU-A5W6-01 6 81053545 81053545 G C BCKDHB 3'UTR 0.15 TCGA-CU-A5W6-01 6 91261808 91261808 G A MAP3K7 Missense_Mutation p.S276L 0.21 deleterious(0) possibly_damaging(0.83) TCGA-CU-A5W6-01 7 100853905 100853905 C T PLOD3 Missense_Mutation p.D470N 0.29 tolerated(0.07) benign(0.004) TCGA-CU-A5W6-01 7 128582327 128582327 C G IRF5 Missense_Mutation p.F64L 0.24 deleterious(0) possibly_damaging(0.452) TCGA-CU-A5W6-01 7 148921257 148921257 G T ZNF282 Missense_Mutation p.G512C 0.27 tolerated(0.08) probably_damaging(0.925) TCGA-CU-A5W6-01 7 150710956 150710956 G A NOS3 Missense_Mutation p.E1134K 0.39 tolerated(0.76) benign(0.077) TCGA-CU-A5W6-01 7 1516274 1516274 G C INTS1 Missense_Mutation p.L1695V 0.21 deleterious(0) possibly_damaging(0.646) TCGA-CU-A5W6-01 7 16255786 16255786 G C ISPD Missense_Mutation p.Q386E 0.12 tolerated(0.72) benign(0.001) TCGA-CU-A5W6-01 7 7680169 7680169 C A RPA3 5'UTR 0.50 TCGA-CU-A5W6-01 7 87133567 87133567 G A ABCB1 Missense_Mutation p.R1279C 0.10 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-CU-A5W6-01 7 92985312 92985312 G C CCDC132 Missense_Mutation p.D899H 0.38 tolerated(0.59) possibly_damaging(0.525) TCGA-CU-A5W6-01 8 144892714 144892714 C T SCRIB Missense_Mutation p.E489K 0.29 possibly_damaging(0.729) TCGA-CU-A5W6-01 8 145690204 145690204 C T CYHR1 Silent p.V27V 0.31 TCGA-CU-A5W6-01 8 19250976 19250976 C G SH2D4A Missense_Mutation p.S399C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CU-A5W6-01 8 25136168 25136168 G A DOCK5 Missense_Mutation p.R103Q 0.58 tolerated(0.14) benign(0.01) TCGA-CU-A5W6-01 8 30948416 30948416 C G WRN Missense_Mutation p.S596C 0.12 tolerated(0.36) benign(0.246) TCGA-CU-A5W6-01 8 56015041 56015041 G A XKR4 5'UTR 0.17 TCGA-CU-A5W6-01 9 100105771 100105771 C T CCDC180 Silent p.I852I 0.58 TCGA-CU-A5W6-01 9 124522320 124522320 G A DAB2IP Missense_Mutation p.E230K 0.55 deleterious(0) probably_damaging(0.996) TCGA-CU-A5W6-01 9 125141146 125141146 C A PTGS1 Missense_Mutation p.R149S 0.07 deleterious(0) probably_damaging(0.974) TCGA-CU-A5W6-01 9 130471920 130471920 C A C9orf117 Silent p.R127R 0.60 TCGA-CU-A5W6-01 9 4118865 4118865 C G GLIS3 Missense_Mutation p.E205Q 0.49 deleterious(0.03) probably_damaging(0.994) TCGA-CU-A5W6-01 9 5756257 5756257 C T KIAA1432 Missense_Mutation p.H580Y 0.47 tolerated(0.37) benign(0.328) TCGA-CU-A5W6-01 9 84532129 84532129 C T SPATA31D5P RNA 0.59 TCGA-CU-A5W6-01 9 86917259 86917259 C T SLC28A3 Missense_Mutation p.R127K 0.64 deleterious(0.01) possibly_damaging(0.76) TCGA-CU-A5W6-01 9 88954989 88954989 A G ZCCHC6 Silent p.H390H 0.56 TCGA-CU-A5W6-01 X 148585708 148585708 G A IDS Silent p.L73L 0.44 TCGA-CU-A5W6-01 X 15864095 15864095 C T AP1S2 Silent p.Q73Q 0.32 TCGA-CU-A5W6-01 X 30269691 30269691 A G MAGEB1 3'UTR 0.63 TCGA-CU-A5W6-01 X 48631763 48631763 G A GLOD5 Missense_Mutation p.R132K 0.50 deleterious(0.02) possibly_damaging(0.73) TCGA-CU-A5W6-01 X 48673145 48673145 G C HDAC6 Missense_Mutation p.E333Q 0.60 tolerated(0.11) probably_damaging(0.963) TCGA-CU-A5W6-01 X 48674019 48674019 G C HDAC6 Missense_Mutation p.E432Q 0.59 tolerated(0.41) benign(0.022) TCGA-CU-A5W6-01 X 48674935 48674935 G C HDAC6 Missense_Mutation p.E562D 0.75 deleterious(0.04) probably_damaging(0.95) TCGA-CU-A5W6-01 X 48676746 48676746 G A HDAC6 Nonsense_Mutation p.W705* 0.73 TCGA-CU-A72E-01 10 33165338 33165338 G A C10ORF68 3'UTR 0.26 TCGA-CU-A72E-01 10 71873971 71873971 G C AIFM2 Missense_Mutation p.S362C 0.26 tolerated(0.08) possibly_damaging(0.682) TCGA-CU-A72E-01 11 13399940 13399940 G A ARNTL Missense_Mutation p.G490R 0.45 tolerated(0.18) probably_damaging(0.994) TCGA-CU-A72E-01 11 76169287 76169287 G A C11orf30 Silent p.L102L 0.32 TCGA-CU-A72E-01 12 101686952 101686952 G C UTP20 Missense_Mutation p.E394Q 0.63 tolerated(0.36) benign(0.007) TCGA-CU-A72E-01 12 52967192 52967192 G A KRT74 Missense_Mutation p.P124S 0.29 deleterious(0.01) probably_damaging(0.938) TCGA-CU-A72E-01 12 53171103 53171103 G T KRT76 5'UTR 0.25 TCGA-CU-A72E-01 12 88420820 88420820 C T C12orf50 5'UTR 0.52 TCGA-CU-A72E-01 13 23911384 23911384 G C SACS Missense_Mutation p.Q2211E 0.23 probably_damaging(0.966) TCGA-CU-A72E-01 13 25020834 25020834 C G PARP4 Missense_Mutation p.Q1117H 0.31 deleterious(0) probably_damaging(0.959) TCGA-CU-A72E-01 13 38211404 38211404 G A TRPC4 Missense_Mutation p.A862V 0.26 tolerated_low_confidence(0.21) benign(0.007) TCGA-CU-A72E-01 13 50594389 50594389 C T KCNRG Silent p.N206N 0.29 TCGA-CU-A72E-01 14 20943054 20943054 C G PNP Missense_Mutation p.I136M 0.46 deleterious(0) probably_damaging(0.994) TCGA-CU-A72E-01 14 45605472 45605472 G C FANCM Missense_Mutation p.G80R 0.16 deleterious(0) probably_damaging(0.979) TCGA-CU-A72E-01 14 69256534 69256535 - G ZFP36L1 Frame_Shift_Ins p.D245Rfs*5 0.31 TCGA-CU-A72E-01 15 25430602 25430602 G T SNORD115-10 5'Flank 0.32 TCGA-CU-A72E-01 15 33993191 33993191 G C RYR3 Missense_Mutation p.M2131I 0.57 benign(0.426) TCGA-CU-A72E-01 15 35207303 35207303 G A AQR Missense_Mutation p.R474C 0.38 deleterious(0) probably_damaging(0.999) TCGA-CU-A72E-01 15 42058491 42058491 G C MGA Missense_Mutation p.Q2737H 0.50 deleterious(0.01) possibly_damaging(0.498) TCGA-CU-A72E-01 15 52613560 52613560 C G MYO5A Missense_Mutation p.M1624I 0.49 tolerated(0.11) benign(0.027) TCGA-CU-A72E-01 16 10551356 10551356 C A ATF7IP2 Nonsense_Mutation p.S441* 0.05 TCGA-CU-A72E-01 16 1306599 1306599 G C TPSD1 Silent p.L55L 0.38 TCGA-CU-A72E-01 16 4016420 4016420 C T ADCY9 Missense_Mutation p.E1140K 0.29 deleterious(0.01) possibly_damaging(0.562) TCGA-CU-A72E-01 16 58710202 58710202 G A SLC38A7 Silent p.F253F 0.12 TCGA-CU-A72E-01 16 72135070 72135070 G - DHX38 Frame_Shift_Del p.E456Sfs*23 0.27 TCGA-CU-A72E-01 16 72821498 72821498 C G ZFHX3 Silent p.T3559T 0.36 TCGA-CU-A72E-01 17 34068088 34068088 G A RASL10B Missense_Mutation p.V126M 0.36 deleterious(0) possibly_damaging(0.864) TCGA-CU-A72E-01 17 35641867 35641867 T C ACACA Missense_Mutation p.S115G 0.41 deleterious_low_confidence(0) benign(0.36) TCGA-CU-A72E-01 17 3844279 3844279 C T ATP2A3 Missense_Mutation p.E696K 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-CU-A72E-01 17 39197464 39197464 G T KRTAP1-1 Silent p.T62T 0.36 TCGA-CU-A72E-01 17 49156970 49156970 C T SPAG9 Silent p.L133L 0.30 TCGA-CU-A72E-01 17 56598442 56598442 C G SEPT4 Silent p.V413V 0.31 TCGA-CU-A72E-01 17 7165243 7165243 G A CLDN7 Silent p.I40I 0.29 TCGA-CU-A72E-01 17 79941434 79941434 C T ASPSCR1 Nonsense_Mutation p.Q55* 0.50 TCGA-CU-A72E-01 18 19997273 19997273 G C CTAGE1 Missense_Mutation p.Q168E 0.44 tolerated(0.22) benign(0.099) TCGA-CU-A72E-01 18 50592536 50592536 G T DCC Missense_Mutation p.A421S 0.10 tolerated(0.17) benign(0.013) TCGA-CU-A72E-01 18 74583656 74583656 G C ZNF236 Splice_Site p.X179_splice 0.48 TCGA-CU-A72E-01 19 15355347 15355347 G A BRD4 Missense_Mutation p.P759L 0.39 possibly_damaging(0.726) TCGA-CU-A72E-01 19 18632866 18632866 C T ELL 5'UTR 0.50 TCGA-CU-A72E-01 19 23328138 23328138 G T ZNF730 Missense_Mutation p.V98F 0.43 deleterious(0.01) probably_damaging(0.956) TCGA-CU-A72E-01 19 38990294 38990294 C T RYR1 Silent p.N2349N 0.34 TCGA-CU-A72E-01 19 39369928 39369928 C T SIRT2 Missense_Mutation p.R346Q 0.39 tolerated(0.45) benign(0.001) TCGA-CU-A72E-01 19 40732342 40732342 C G CNTD2 Silent p.L69L 0.45 TCGA-CU-A72E-01 19 41704393 41704393 C T CYP2S1 Silent p.L174L 0.28 TCGA-CU-A72E-01 19 45574925 45574925 G A ZNF296 Silent p.F454F 0.36 TCGA-CU-A72E-01 19 45575067 45575067 G A ZNF296 Missense_Mutation p.S407L 0.36 deleterious(0) probably_damaging(0.997) TCGA-CU-A72E-01 19 45912210 45912210 G C CD3EAP Missense_Mutation p.K328N 0.27 deleterious(0.04) probably_damaging(0.983) TCGA-CU-A72E-01 19 48306165 48306165 C T TPRX1 Missense_Mutation p.G35R 0.62 deleterious_low_confidence(0.03) unknown(0) TCGA-CU-A72E-01 19 49132555 49132555 C G SPHK2 Missense_Mutation p.S497C 0.37 tolerated(0.07) benign(0.01) TCGA-CU-A72E-01 19 50399170 50399170 C G IL4I1 Missense_Mutation p.G74R 0.28 deleterious(0) probably_damaging(0.999) TCGA-CU-A72E-01 19 51525914 51525914 G C KLK11 Missense_Mutation p.Q246E 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-CU-A72E-01 19 55365484 55365484 T A KIR3DL2 Missense_Mutation p.L213Q 0.57 deleterious(0) possibly_damaging(0.802) TCGA-CU-A72E-01 19 56373457 56373457 C G NLRP4 Silent p.L706L 0.37 TCGA-CU-A72E-01 19 7527093 7527093 G T ARHGEF18 Missense_Mutation p.Q648H 0.33 tolerated(0.31) benign(0.039) TCGA-CU-A72E-01 1 103471860 103471860 G A COL11A1 Silent p.G565G 0.27 TCGA-CU-A72E-01 1 160394991 160394991 G A VANGL2 Silent p.V463V 0.46 TCGA-CU-A72E-01 1 16893821 16893821 T A NBPF1 Nonsense_Mutation p.K898* 0.03 TCGA-CU-A72E-01 1 196309666 196309666 C T KCNT2 Missense_Mutation p.D530N 0.41 deleterious(0.05) benign(0.201) TCGA-CU-A72E-01 1 196884265 196884265 A T CFHR4 Missense_Mutation p.I512L 0.21 tolerated(1) benign(0.196) TCGA-CU-A72E-01 1 201984341 201984342 - A ELF3 Nonsense_Mutation p.Y336* 0.32 TCGA-CU-A72E-01 1 203466222 203466222 C T OPTC Silent p.L117L 0.55 TCGA-CU-A72E-01 1 21024914 21024914 C T KIF17 Silent p.V397V 0.32 TCGA-CU-A72E-01 1 223179094 223179094 C T DISP1 Missense_Mutation p.S1452L 0.21 tolerated_low_confidence(0.18) benign(0.004) TCGA-CU-A72E-01 1 226109569 226109569 C T PYCR2 Missense_Mutation p.G177R 0.25 deleterious(0) probably_damaging(0.994) TCGA-CU-A72E-01 1 248343675 248343675 C T OR2M2 Silent p.L130L 0.32 TCGA-CU-A72E-01 1 33236374 33236374 C T KIAA1522 Nonsense_Mutation p.Q532* 0.43 TCGA-CU-A72E-01 1 36557423 36557423 G A ADPRHL2 Silent p.Q171Q 0.28 TCGA-CU-A72E-01 1 52991327 52991327 G C ZCCHC11 Nonsense_Mutation p.S209* 0.45 TCGA-CU-A72E-01 1 65871788 65871788 C T DNAJC6 Silent p.N821N 0.38 TCGA-CU-A72E-01 1 78097992 78097992 C T ZZZ3 Missense_Mutation p.G350R 0.32 deleterious(0.01) benign(0.013) TCGA-CU-A72E-01 1 99767391 99767391 A - LPPR4 Frame_Shift_Del p.K302Rfs*12 0.24 TCGA-CU-A72E-01 20 16553909 16553909 G T KIF16B Silent p.V4V 0.27 TCGA-CU-A72E-01 20 41100919 41100919 C T PTPRT Silent p.Q479Q 0.44 TCGA-CU-A72E-01 20 44512534 44512534 G A ZSWIM1 Missense_Mutation p.E435K 0.38 tolerated(0.08) benign(0.118) TCGA-CU-A72E-01 20 46290558 46290558 C T SULF2 Missense_Mutation p.G818D 0.36 deleterious(0) probably_damaging(0.998) TCGA-CU-A72E-01 21 43535990 43535990 G C UMODL1 Silent p.R918R 0.24 TCGA-CU-A72E-01 21 46020934 46020934 C G KRTAP10-7 Missense_Mutation p.S138C 0.29 deleterious(0.01) unknown(0) TCGA-CU-A72E-01 22 19363188 19363188 C A HIRA Missense_Mutation p.A581S 0.33 tolerated(0.73) benign(0.003) TCGA-CU-A72E-01 22 42180390 42180390 C A MEI1 Silent p.L1045L 0.39 TCGA-CU-A72E-01 2 128263050 128263050 T A IWS1 Silent p.A143A 0.38 TCGA-CU-A72E-01 2 170060776 170060776 C T LRP2 Missense_Mutation p.R2574K 0.35 benign(0.002) TCGA-CU-A72E-01 2 170366815 170366815 C T KLHL41 Missense_Mutation p.P176L 0.29 tolerated(0.15) possibly_damaging(0.734) TCGA-CU-A72E-01 2 220285374 220285374 C T DES Missense_Mutation p.S298L 0.26 deleterious(0) probably_damaging(0.975) TCGA-CU-A72E-01 2 45616464 45616464 G A SRBD1 Silent p.L991L 0.31 TCGA-CU-A72E-01 2 8822989 8822989 C G ID2 Missense_Mutation p.S122C 0.33 tolerated(0.14) benign(0.443) TCGA-CU-A72E-01 2 9576354 9576354 G A CPSF3 Silent p.G208G 0.29 TCGA-CU-A72E-01 3 121350795 121350795 G A HCLS1 Silent p.D453D 0.24 TCGA-CU-A72E-01 3 124746195 124746195 G A HEG1 Missense_Mutation p.S256L 0.30 deleterious(0.03) benign(0.089) TCGA-CU-A72E-01 3 133376679 133376679 A T TOPBP1 Missense_Mutation p.V109E 0.28 deleterious(0) possibly_damaging(0.897) TCGA-CU-A72E-01 3 133376680 133376680 C T TOPBP1 Missense_Mutation p.V109I 0.28 tolerated(0.19) benign(0.029) TCGA-CU-A72E-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-CU-A72E-01 3 193855609 193855610 - C HES1 Frame_Shift_Ins p.N145Qfs*70 0.25 TCGA-CU-A72E-01 3 58139287 58139287 G T FLNB Missense_Mutation p.V2216L 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-CU-A72E-01 3 98188869 98188869 T C OR5K1 Missense_Mutation p.I150T 0.32 tolerated(0.07) benign(0.017) TCGA-CU-A72E-01 4 147561043 147561043 G T POU4F2 Nonsense_Mutation p.E105* 0.41 TCGA-CU-A72E-01 4 152024203 152024203 A C RPS3A Missense_Mutation p.N179H 0.26 tolerated(0.12) possibly_damaging(0.853) TCGA-CU-A72E-01 4 155459229 155459229 T C PLRG1 Missense_Mutation p.I395V 0.25 deleterious(0.05) benign(0.042) TCGA-CU-A72E-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.77 deleterious(0.01) possibly_damaging(0.594) TCGA-CU-A72E-01 4 1805540 1805540 C T FGFR3 Intron 0.76 TCGA-CU-A72E-01 4 1815997 1815997 G A LETM1 3'UTR 0.86 TCGA-CU-A72E-01 4 36231154 36231154 G A ARAP2 5'UTR 0.38 TCGA-CU-A72E-01 4 39501712 39501712 C T UGDH 3'UTR 0.62 TCGA-CU-A72E-01 4 46979077 46979077 C T GABRA4 Splice_Site p.X193_splice 0.19 TCGA-CU-A72E-01 4 48140931 48140931 G A TEC Silent p.V548V 0.42 TCGA-CU-A72E-01 4 71554785 71554785 C T UTP3 Nonsense_Mutation p.Q131* 0.17 TCGA-CU-A72E-01 5 140719469 140719469 G C PCDHGA2 Missense_Mutation p.D311H 0.33 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-CU-A72E-01 5 140719490 140719490 G C PCDHGA2 Missense_Mutation p.D318H 0.34 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-CU-A72E-01 5 150922924 150922932 AGATGCTTT - FAT2 In_Frame_Del p.K2586_S2588del 0.28 TCGA-CU-A72E-01 5 177309490 177309490 C T RP11-423H2.1 RNA 0.15 TCGA-CU-A72E-01 6 112435893 112435893 A G LAMA4 Missense_Mutation p.C1727R 0.32 deleterious(0) probably_damaging(1) TCGA-CU-A72E-01 6 129649456 129649456 C G LAMA2 Missense_Mutation p.Q1404E 0.39 tolerated(1) benign(0) TCGA-CU-A72E-01 6 155458565 155458565 C T TIAM2 Silent p.A483A 0.29 TCGA-CU-A72E-01 6 17781433 17781433 G A KIF13A Missense_Mutation p.P1215L 0.44 deleterious(0.04) benign(0.261) TCGA-CU-A72E-01 6 32945601 32945601 C T BRD2 Missense_Mutation p.S466F 0.16 deleterious(0.01) possibly_damaging(0.622) TCGA-CU-A72E-01 6 33647908 33647908 G A ITPR3 Missense_Mutation p.E1408K 0.26 deleterious(0) probably_damaging(0.999) TCGA-CU-A72E-01 6 34789589 34789589 C G UHRF1BP1 Missense_Mutation p.I68M 0.27 deleterious(0) probably_damaging(0.996) TCGA-CU-A72E-01 6 76024278 76024278 C G FILIP1 Missense_Mutation p.E424Q 0.29 tolerated(0.07) possibly_damaging(0.788) TCGA-CU-A72E-01 6 86159926 86159926 G A NT5E Silent p.A23A 0.42 TCGA-CU-A72E-01 7 115581854 115581854 T C TFEC Intron 0.13 TCGA-CU-A72E-01 7 142991400 142991400 C G CASP2 Missense_Mutation p.Q185E 0.20 tolerated(0.28) benign(0) TCGA-CU-A72E-01 7 31793138 31793138 G A PDE1C Missense_Mutation p.R724C 0.46 deleterious_low_confidence(0) benign(0.402) TCGA-CU-A72E-01 7 82578803 82578803 C T PCLO Missense_Mutation p.E3701K 0.22 unknown(0) TCGA-CU-A72E-01 7 99725616 99725616 G A MBLAC1 Missense_Mutation p.E200K 0.29 tolerated(0.06) benign(0.058) TCGA-CU-A72E-01 8 133894157 133894157 G C TG Missense_Mutation p.E230Q 0.78 deleterious(0.03) possibly_damaging(0.662) TCGA-CU-A72E-01 8 144358503 144358503 C T GLI4 Silent p.F220F 0.13 TCGA-CU-A72E-01 8 146029623 146029623 G A ZNF517 Missense_Mutation p.D92N 0.58 tolerated(0.07) possibly_damaging(0.539) TCGA-CU-A72E-01 8 2071163 2071163 C G MYOM2 Silent p.L1164L 0.11 TCGA-CU-A72E-01 8 24775171 24775171 G A NEFM Silent p.L601L 0.14 TCGA-CU-A72E-01 8 2832017 2832017 C T CSMD1 Missense_Mutation p.C2899Y 0.23 probably_damaging(0.979) TCGA-CU-A72E-01 9 2718355 2718355 C T KCNV2 Missense_Mutation p.R206W 0.44 deleterious(0) probably_damaging(0.987) TCGA-CU-A72E-01 9 5762588 5762588 C T KIAA1432 Silent p.I680I 0.44 TCGA-CU-A72E-01 X 123227962 123227962 G T STAG2 Nonsense_Mutation p.G1225* 0.69 TCGA-CU-A72E-01 X 141290841 141290841 C T MAGEC2 Silent p.K311K 0.82 TCGA-CU-A72E-01 X 47038856 47038856 C G RBM10 Nonsense_Mutation p.S288* 0.33 TCGA-CU-A72E-01 X 47500813 47500813 A G ELK1 Missense_Mutation p.F10L 0.71 deleterious(0) probably_damaging(0.994) TCGA-CU-A72E-01 X 70341517 70341517 C G MED12 Missense_Mutation p.H318D 0.80 probably_damaging(0.968) TCGA-DK-A1A3-01 10 101445633 101445633 G A ENTPD7 Silent p.V211V 0.40 TCGA-DK-A1A3-01 10 102777862 102777862 C T PDZD7 Missense_Mutation p.E506K 0.11 deleterious_low_confidence(0) benign(0.146) TCGA-DK-A1A3-01 10 103531247 103531247 C T FGF8 Missense_Mutation p.M139I 0.33 deleterious(0.04) benign(0.163) TCGA-DK-A1A3-01 10 103900177 103900177 G A PPRC1 Missense_Mutation p.D638N 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.598) TCGA-DK-A1A3-01 10 103900464 103900464 G A PPRC1 Silent p.L733L 0.25 TCGA-DK-A1A3-01 10 103901412 103901412 G A PPRC1 Silent p.Q1049Q 0.13 TCGA-DK-A1A3-01 10 104416690 104416690 C G TRIM8 Missense_Mutation p.S412C 0.10 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-DK-A1A3-01 10 105006301 105006301 T C RPEL1 Missense_Mutation p.V183A 0.28 deleterious(0.03) benign(0.385) TCGA-DK-A1A3-01 10 105990389 105990389 A G WDR96 Missense_Mutation p.V93A 0.32 deleterious(0) benign(0.137) TCGA-DK-A1A3-01 10 112839122 112839122 C T ADRA2A Silent p.L456L 0.15 TCGA-DK-A1A3-01 10 123844346 123844346 G A TACC2 Silent p.G777G 0.38 TCGA-DK-A1A3-01 10 124591682 124591682 T C CUZD1 3'UTR 0.06 TCGA-DK-A1A3-01 10 129245729 129245729 G A DOCK1 Missense_Mutation p.V1808M 0.30 tolerated(0.25) benign(0) TCGA-DK-A1A3-01 10 129913744 129913744 C T MKI67 Missense_Mutation p.E310K 0.17 tolerated(0.19) benign(0.067) TCGA-DK-A1A3-01 10 134219559 134219559 G A PWWP2B Missense_Mutation p.G519R 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1A3-01 10 135213089 135213089 C T MTG1 Silent p.L159L 0.31 TCGA-DK-A1A3-01 10 14944519 14944519 C T SUV39H2 3'Flank 0.42 TCGA-DK-A1A3-01 10 14996030 14996030 C T DCLRE1C 5'UTR 0.12 TCGA-DK-A1A3-01 10 18331702 18331702 G C SLC39A12 Missense_Mutation p.L672F 0.15 deleterious(0) probably_damaging(0.983) TCGA-DK-A1A3-01 10 25138720 25138720 T C PRTFDC1 3'UTR 0.40 TCGA-DK-A1A3-01 10 28970184 28970184 C T BAMBI Intron 0.25 TCGA-DK-A1A3-01 10 35317794 35317794 G A CUL2 Nonsense_Mutation p.Q540* 0.35 TCGA-DK-A1A3-01 10 35929518 35929518 C G FZD8 Missense_Mutation p.W280C 0.06 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 10 43883236 43883236 C T HNRNPF Missense_Mutation p.D33N 0.19 tolerated(0.21) benign(0.014) TCGA-DK-A1A3-01 10 44052855 44052855 G A ZNF239 Missense_Mutation p.H225Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A3-01 10 49450206 49450206 C T FRMPD2 Missense_Mutation p.E189K 0.12 tolerated(0.08) benign(0.022) TCGA-DK-A1A3-01 10 52103878 52103878 A G SGMS1 5'UTR 0.22 TCGA-DK-A1A3-01 10 60273078 60273078 G A BICC1 Missense_Mutation p.E59K 0.37 deleterious(0) benign(0.004) TCGA-DK-A1A3-01 10 71144211 71144211 G A HK1 Missense_Mutation p.E569K 0.27 tolerated(0.15) benign(0.16) TCGA-DK-A1A3-01 10 72297564 72297564 C T PALD1 Intron 0.15 TCGA-DK-A1A3-01 10 72358051 72358051 C T PRF1 Missense_Mutation p.G476R 0.25 deleterious(0.01) benign(0.204) TCGA-DK-A1A3-01 10 75609037 75609037 G A CAMK2G Silent p.I132I 0.22 TCGA-DK-A1A3-01 10 81052048 81052048 A C ZMIZ1 Missense_Mutation p.T298P 0.17 probably_damaging(0.994) TCGA-DK-A1A3-01 10 93719635 93719635 G A BTAF1 Missense_Mutation p.E362K 0.33 deleterious(0.01) benign(0.184) TCGA-DK-A1A3-01 10 94267358 94267358 G C IDE Missense_Mutation p.Q407E 0.15 tolerated(0.24) benign(0.036) TCGA-DK-A1A3-01 10 94757311 94757311 G C EXOC6 Missense_Mutation p.E678D 0.11 tolerated(0.78) benign(0.02) TCGA-DK-A1A3-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.30 TCGA-DK-A1A3-01 10 96796829 96796829 G C CYP2C8 3'UTR 0.27 TCGA-DK-A1A3-01 10 98078150 98078150 C T DNTT Missense_Mutation p.S82L 0.14 tolerated(0.29) benign(0.011) TCGA-DK-A1A3-01 10 99023225 99023225 C T ARHGAP19 Missense_Mutation p.E189K 0.25 deleterious(0) probably_damaging(0.955) TCGA-DK-A1A3-01 11 1025893 1025893 G C MUC6 Nonsense_Mutation p.S904* 0.27 TCGA-DK-A1A3-01 11 104774208 104774208 C G RP11-693N9.2 RNA 0.25 TCGA-DK-A1A3-01 11 110124732 110124732 T C RDX Missense_Mutation p.I300V 0.24 deleterious(0.02) benign(0.02) TCGA-DK-A1A3-01 11 111249962 111249962 G A POU2AF1 5'UTR 0.25 TCGA-DK-A1A3-01 11 116640940 116640940 T C BUD13 Splice_Site p.X48_splice 0.20 TCGA-DK-A1A3-01 11 118344511 118344511 G A KMT2A Silent p.E879E 0.29 TCGA-DK-A1A3-01 11 120008356 120008356 G C TRIM29 Silent p.R128R 0.15 TCGA-DK-A1A3-01 11 120673512 120673512 G C GRIK4 Missense_Mutation p.E65Q 0.14 tolerated(0.19) probably_damaging(0.999) TCGA-DK-A1A3-01 11 12278354 12278354 C A MICAL2 Missense_Mutation p.P993H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1A3-01 11 12278388 12278388 C G MICAL2 Missense_Mutation p.F1004L 0.16 deleterious(0) probably_damaging(0.997) TCGA-DK-A1A3-01 11 124757737 124757737 C T ROBO4 Splice_Site p.X650_splice 0.22 TCGA-DK-A1A3-01 11 124949113 124949113 C T SLC37A2 Silent p.I140I 0.18 TCGA-DK-A1A3-01 11 128910840 128910840 T C ARHGAP32 Missense_Mutation p.N329S 0.22 tolerated(0.25) benign(0.021) TCGA-DK-A1A3-01 11 129246012 129246012 G A BARX2 Missense_Mutation p.D28N 0.32 deleterious(0) probably_damaging(0.919) TCGA-DK-A1A3-01 11 129246023 129246023 C G BARX2 Silent p.L31L 0.15 TCGA-DK-A1A3-01 11 130785628 130785628 G A SNX19 Silent p.L69L 0.18 TCGA-DK-A1A3-01 11 22382440 22382440 C T SLC17A6 Intron 0.08 TCGA-DK-A1A3-01 11 32858272 32858272 G C PRRG4 Missense_Mutation p.E58Q 0.18 deleterious(0) probably_damaging(0.981) TCGA-DK-A1A3-01 11 35684687 35684687 G A TRIM44 Missense_Mutation p.E10K 0.25 deleterious(0) probably_damaging(0.99) TCGA-DK-A1A3-01 11 40137629 40137629 C T LRRC4C Missense_Mutation p.D72N 0.35 tolerated(0.45) benign(0.013) TCGA-DK-A1A3-01 11 48510885 48510885 C G OR4A47 Missense_Mutation p.P181A 0.05 deleterious_low_confidence(0) benign(0.424) TCGA-DK-A1A3-01 11 4928820 4928820 C T OR51A7 Missense_Mutation p.S74F 0.10 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A3-01 11 4928821 4928821 C T OR51A7 Silent p.S74S 0.11 TCGA-DK-A1A3-01 11 4928822 4928822 C T OR51A7 Missense_Mutation p.L75F 0.10 tolerated(0.38) benign(0.012) TCGA-DK-A1A3-01 11 5444186 5444186 C G OR51Q1 Silent p.V252V 0.13 TCGA-DK-A1A3-01 11 57506699 57506699 G C TMX2 Missense_Mutation p.K237N 0.12 tolerated(0.37) benign(0.024) TCGA-DK-A1A3-01 11 57798494 57798494 G A OR6Q1 Missense_Mutation p.E24K 0.26 tolerated(0.22) benign(0.321) TCGA-DK-A1A3-01 11 58322349 58322349 C T LPXN Missense_Mutation p.E100K 0.06 tolerated(0.16) benign(0.097) TCGA-DK-A1A3-01 11 58478139 58478139 C T GLYAT Missense_Mutation p.E138K 0.17 tolerated(0.24) benign(0.119) TCGA-DK-A1A3-01 11 58978821 58978821 G C MPEG1 Silent p.L506L 0.16 TCGA-DK-A1A3-01 11 59349008 59349008 G A OSBP Silent p.F566F 0.11 TCGA-DK-A1A3-01 11 60229875 60229875 G A MS4A1 Missense_Mutation p.G10R 0.29 deleterious(0.03) benign(0.132) TCGA-DK-A1A3-01 11 62334336 62334336 C T EEF1G Missense_Mutation p.E267K 0.36 tolerated(0.07) benign(0.094) TCGA-DK-A1A3-01 11 62439422 62439422 C T C11orf83 Intron 0.23 TCGA-DK-A1A3-01 11 62622829 62622829 A G SLC3A2 5'Flank 0.30 TCGA-DK-A1A3-01 11 63235859 63235859 C A HRASLS5 Missense_Mutation p.D152Y 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A1A3-01 11 6412757 6412757 C G SMPD1 Missense_Mutation p.S154R 0.40 tolerated(0.53) benign(0.02) TCGA-DK-A1A3-01 11 6432430 6432430 G C APBB1 Missense_Mutation p.L50V 0.13 tolerated(0.21) possibly_damaging(0.801) TCGA-DK-A1A3-01 11 64668054 64668054 G C ATG2A Missense_Mutation p.S1459C 0.16 deleterious(0.01) probably_damaging(0.94) TCGA-DK-A1A3-01 11 64888875 64888875 C T FAU Intron 0.33 TCGA-DK-A1A3-01 11 65265316 65265316 G A MALAT1 RNA 0.37 TCGA-DK-A1A3-01 11 65267742 65267742 G A MALAT1 RNA 0.27 TCGA-DK-A1A3-01 11 65267982 65267982 G C MALAT1 RNA 0.31 TCGA-DK-A1A3-01 11 65268182 65268182 G C MALAT1 RNA 0.11 TCGA-DK-A1A3-01 11 65269399 65269399 G A MALAT1 RNA 0.25 TCGA-DK-A1A3-01 11 65271213 65271213 G A MALAT1 RNA 0.26 TCGA-DK-A1A3-01 11 65421919 65421919 G A RELA Missense_Mutation p.S529L 0.28 deleterious_low_confidence(0.01) benign(0.001) TCGA-DK-A1A3-01 11 65487914 65487914 C T RNASEH2C Intron 0.25 TCGA-DK-A1A3-01 11 65824745 65824745 C G SF3B2 Missense_Mutation p.P226A 0.15 tolerated_low_confidence(0.22) benign(0.122) TCGA-DK-A1A3-01 11 66410998 66410998 C A RBM14-RBM4 Silent p.R139R 0.10 TCGA-DK-A1A3-01 11 66444285 66444285 C T RBM4B Missense_Mutation p.C89Y 0.30 deleterious(0.01) benign(0.388) TCGA-DK-A1A3-01 11 68838874 68838874 C T TPCN2 Missense_Mutation p.R316W 0.28 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A3-01 11 6891489 6891489 C A OR10A2 Missense_Mutation p.S168R 0.10 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A3-01 11 71511553 71511553 C T FAM86C1 3'UTR 0.21 TCGA-DK-A1A3-01 11 85437234 85437234 G A SYTL2 Missense_Mutation p.S89L 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.755) TCGA-DK-A1A3-01 11 94340677 94340677 C T PIWIL4 Missense_Mutation p.P571S 0.35 deleterious(0.01) possibly_damaging(0.816) TCGA-DK-A1A3-01 11 9806738 9806738 G A SBF2 Missense_Mutation p.S1722F 0.15 deleterious(0.02) possibly_damaging(0.635) TCGA-DK-A1A3-01 12 10218209 10218209 A C CLEC9A Missense_Mutation p.Y235S 0.17 tolerated(0.61) benign(0.122) TCGA-DK-A1A3-01 12 102559617 102559617 C T PARPBP Silent p.F259F 0.11 TCGA-DK-A1A3-01 12 105282830 105282830 G A SLC41A2 Silent p.F287F 0.28 TCGA-DK-A1A3-01 12 105558049 105558049 G A KIAA1033 Missense_Mutation p.M1106I 0.20 deleterious(0.04) benign(0.407) TCGA-DK-A1A3-01 12 112477111 112477111 G T NAA25 Nonsense_Mutation p.Y857* 0.28 TCGA-DK-A1A3-01 12 112608964 112608964 G A HECTD4 Silent p.P3817P 0.21 TCGA-DK-A1A3-01 12 113629482 113629482 C G RITA1 Missense_Mutation p.Q224E 0.14 tolerated(0.4) benign(0.046) TCGA-DK-A1A3-01 12 116549237 116549237 C G MED13L Missense_Mutation p.E131Q 0.10 deleterious(0) unknown(0) TCGA-DK-A1A3-01 12 120221778 120221778 C T CIT Silent p.L493L 0.18 TCGA-DK-A1A3-01 12 123342655 123342655 C G HIP1R Missense_Mutation p.Q608E 0.13 tolerated(0.43) benign(0.005) TCGA-DK-A1A3-01 12 12630725 12630725 G A DUSP16 Missense_Mutation p.S347L 0.39 tolerated(0.16) benign(0.009) TCGA-DK-A1A3-01 12 12630832 12630832 G C DUSP16 Silent p.L311L 0.34 TCGA-DK-A1A3-01 12 12630910 12630910 G A DUSP16 Silent p.F285F 0.27 TCGA-DK-A1A3-01 12 133428210 133428210 G A CHFR Nonsense_Mutation p.Q508* 0.25 TCGA-DK-A1A3-01 12 27067466 27067466 C G ASUN Missense_Mutation p.D432H 0.21 tolerated(0.14) benign(0.264) TCGA-DK-A1A3-01 12 27933977 27933977 C T KLHL42 Silent p.P238P 0.27 TCGA-DK-A1A3-01 12 29757224 29757224 C T TMTC1 Silent p.E379E 0.23 TCGA-DK-A1A3-01 12 31613259 31613259 G A DENND5B Nonsense_Mutation p.Q321* 0.40 TCGA-DK-A1A3-01 12 41967407 41967407 C T PDZRN4 Silent p.S942S 0.28 TCGA-DK-A1A3-01 12 42854114 42854114 C A PRICKLE1 Nonsense_Mutation p.E665* 0.17 TCGA-DK-A1A3-01 12 45782045 45782045 G A ANO6 Missense_Mutation p.E444K 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-DK-A1A3-01 12 48174294 48174294 G A SLC48A1 3'UTR 0.27 TCGA-DK-A1A3-01 12 48238451 48238451 G A VDR 3'UTR 0.21 TCGA-DK-A1A3-01 12 49721057 49721057 C G TROAP Missense_Mutation p.L279V 0.13 tolerated(0.09) probably_damaging(0.972) TCGA-DK-A1A3-01 12 49890687 49890687 C T SPATS2 Nonsense_Mutation p.Q200* 0.31 TCGA-DK-A1A3-01 12 49918549 49918549 C T SPATS2 Missense_Mutation p.S399F 0.32 deleterious(0.03) benign(0.01) TCGA-DK-A1A3-01 12 51279160 51279160 G A TMPRSS12 Missense_Mutation p.D262N 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A1A3-01 12 51634204 51634204 C G DAZAP2 Missense_Mutation p.Q31E 0.15 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-DK-A1A3-01 12 53647277 53647277 C T MFSD5 Nonsense_Mutation p.R327* 0.30 TCGA-DK-A1A3-01 12 53677897 53677897 G A ESPL1 Missense_Mutation p.D1045N 0.26 deleterious(0.01) probably_damaging(0.917) TCGA-DK-A1A3-01 12 538021 538021 C T CCDC77 Missense_Mutation p.P167L 0.29 deleterious(0.03) probably_damaging(1) TCGA-DK-A1A3-01 12 54423560 54423560 C T HOXC6 Silent p.I174I 0.20 TCGA-DK-A1A3-01 12 56334172 56334172 C T DGKA Silent p.I291I 0.31 TCGA-DK-A1A3-01 12 56536448 56536448 C T ESYT1 Silent p.L950L 0.15 TCGA-DK-A1A3-01 12 56816695 56816695 A C TIMELESS Missense_Mutation p.L792V 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A1A3-01 12 57351294 57351294 C T RDH16 5'UTR 0.26 TCGA-DK-A1A3-01 12 57436895 57436895 G C MYO1A Silent p.L353L 0.09 TCGA-DK-A1A3-01 12 57920498 57920498 G A MBD6 Missense_Mutation p.E524K 0.21 deleterious_low_confidence(0) unknown(0) TCGA-DK-A1A3-01 12 57920933 57920934 - C MBD6 Frame_Shift_Ins p.T672Yfs*45 0.21 TCGA-DK-A1A3-01 12 58114292 58114292 C T OS9 Silent p.F623F 0.09 TCGA-DK-A1A3-01 12 6559563 6559563 G A CD27 Intron 0.44 TCGA-DK-A1A3-01 12 6626188 6626188 G C NCAPD2 Missense_Mutation p.Q394H 0.17 tolerated(0.08) possibly_damaging(0.62) TCGA-DK-A1A3-01 12 6626830 6626830 G C NCAPD2 Missense_Mutation p.Q463H 0.09 tolerated(0.29) benign(0.281) TCGA-DK-A1A3-01 12 6777233 6777233 G T ZNF384 Missense_Mutation p.Q461K 0.18 tolerated_low_confidence(0.14) benign(0.042) TCGA-DK-A1A3-01 12 69044231 69044231 G C RAP1B Missense_Mutation p.E37Q 0.12 deleterious(0) probably_damaging(0.988) TCGA-DK-A1A3-01 12 69126474 69126474 G T NUP107 Missense_Mutation p.A686S 0.33 tolerated(0.27) benign(0.178) TCGA-DK-A1A3-01 12 70088210 70088210 C G BEST3 Missense_Mutation p.E63Q 0.16 deleterious(0) probably_damaging(0.955) TCGA-DK-A1A3-01 12 75437006 75437006 C T KCNC2 Missense_Mutation p.R599Q 0.14 deleterious_low_confidence(0.01) benign(0.016) TCGA-DK-A1A3-01 12 7559389 7559389 C G CD163L1 Missense_Mutation p.E276Q 0.14 deleterious(0.03) possibly_damaging(0.762) TCGA-DK-A1A3-01 12 85547824 85547824 T C LRRIQ1 Silent p.L1558L 0.25 TCGA-DK-A1A3-01 12 89743278 89743278 G A DUSP6 Missense_Mutation p.S300L 0.26 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A3-01 12 90005096 90005096 G C ATP2B1 Silent p.V707V 0.14 TCGA-DK-A1A3-01 12 92818693 92818693 G A CLLU1 Silent p.L79L 0.22 TCGA-DK-A1A3-01 12 94965382 94965382 G A TMCC3 Silent p.F421F 0.28 TCGA-DK-A1A3-01 13 101278119 101278119 C G TMTC4 Missense_Mutation p.M538I 0.23 deleterious(0.01) possibly_damaging(0.731) TCGA-DK-A1A3-01 13 111077333 111077333 G A COL4A2 Missense_Mutation p.D117N 0.09 possibly_damaging(0.586) TCGA-DK-A1A3-01 13 111973258 111973258 G A TEX29 Silent p.V7V 0.29 TCGA-DK-A1A3-01 13 20283725 20283725 C T PSPC1 Missense_Mutation p.M391I 0.29 tolerated(0.27) benign(0.05) TCGA-DK-A1A3-01 13 23904719 23904719 G C SACS Missense_Mutation p.F4432L 0.27 probably_damaging(0.952) TCGA-DK-A1A3-01 13 23904867 23904867 G C SACS Nonsense_Mutation p.S4383* 0.25 TCGA-DK-A1A3-01 13 23905173 23905173 G C SACS Missense_Mutation p.S4281C 0.25 benign(0.215) TCGA-DK-A1A3-01 13 27645266 27645266 T C USP12 Missense_Mutation p.Y318C 0.15 deleterious(0) probably_damaging(0.981) TCGA-DK-A1A3-01 13 37011849 37011849 C T CCNA1 Silent p.V127V 0.30 TCGA-DK-A1A3-01 13 41768468 41768468 C T KBTBD7 5'UTR 0.33 TCGA-DK-A1A3-01 13 45911430 45911430 C G TPT1 3'UTR 0.14 TCGA-DK-A1A3-01 13 52439716 52439716 G C CCDC70 Missense_Mutation p.E68Q 0.12 tolerated(0.34) benign(0.043) TCGA-DK-A1A3-01 14 102514870 102514870 C T DYNC1H1 Silent p.F4412F 0.19 TCGA-DK-A1A3-01 14 104121150 104121150 G A KLC1 Silent p.L83L 0.14 TCGA-DK-A1A3-01 14 20389242 20389242 G T OR4K5 Missense_Mutation p.Q159H 0.15 tolerated(0.08) possibly_damaging(0.582) TCGA-DK-A1A3-01 14 21780010 21780010 G A RPGRIP1 Missense_Mutation p.E320K 0.29 deleterious(0) benign(0.035) TCGA-DK-A1A3-01 14 21780081 21780081 G C RPGRIP1 Missense_Mutation p.L343F 0.45 deleterious(0.02) benign(0.172) TCGA-DK-A1A3-01 14 21780123 21780123 G T RPGRIP1 Silent p.L357L 0.30 TCGA-DK-A1A3-01 14 23652132 23652132 G A SLC7A8 5'UTR 0.35 TCGA-DK-A1A3-01 14 24036260 24036260 C G AP1G2 Intron 0.17 TCGA-DK-A1A3-01 14 24036268 24036268 C A AP1G2 Intron 0.15 TCGA-DK-A1A3-01 14 26917042 26917042 C T NOVA1 3'UTR 0.33 TCGA-DK-A1A3-01 14 35786632 35786632 G A PSMA6 3'UTR 0.17 TCGA-DK-A1A3-01 14 39868857 39868857 G A FBXO33 Missense_Mutation p.H511Y 0.28 deleterious(0.01) possibly_damaging(0.593) TCGA-DK-A1A3-01 14 45433564 45433564 G A FAM179B Missense_Mutation p.R647Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 14 45542646 45542646 C G FAM179B Nonsense_Mutation p.S1682* 0.25 TCGA-DK-A1A3-01 14 51707163 51707163 G C TMX1 Splice_Site p.X51_splice 0.17 TCGA-DK-A1A3-01 14 60574496 60574496 T C PCNXL4 Intron 0.24 TCGA-DK-A1A3-01 14 69256711 69256711 C T ZFP36L1 Missense_Mutation p.A186T 0.14 tolerated(0.36) benign(0.016) TCGA-DK-A1A3-01 14 75231008 75231008 G A YLPM1 Silent p.K272K 0.28 TCGA-DK-A1A3-01 14 77846794 77846794 G T SAMD15 Missense_Mutation p.Q586H 0.28 tolerated(0.08) benign(0.179) TCGA-DK-A1A3-01 14 88946469 88946469 G A PTPN21 Missense_Mutation p.R436W 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 14 90429474 90429474 G A TDP1 Missense_Mutation p.D6N 0.22 tolerated_low_confidence(0.62) benign(0.001) TCGA-DK-A1A3-01 14 92139220 92139220 G T CATSPERB Missense_Mutation p.F373L 0.23 tolerated(0.68) benign(0.003) TCGA-DK-A1A3-01 14 97003330 97003330 G A PAPOLA Missense_Mutation p.E350K 0.20 deleterious(0.03) benign(0.244) TCGA-DK-A1A3-01 15 25492525 25492525 G C SNORD115-42 RNA 0.17 TCGA-DK-A1A3-01 15 31233657 31233657 C G MTMR10 3'UTR 0.41 TCGA-DK-A1A3-01 15 40501871 40501871 C T BUB1B Missense_Mutation p.R727C 0.14 tolerated(0.07) benign(0.302) TCGA-DK-A1A3-01 15 40633137 40633137 C T C15orf52 Missense_Mutation p.E6K 0.13 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-DK-A1A3-01 15 42107900 42107900 G A MAPKBP1 Missense_Mutation p.D472N 0.21 tolerated(0.1) benign(0.331) TCGA-DK-A1A3-01 15 42193072 42193072 G C EHD4 Nonsense_Mutation p.S466* 0.17 TCGA-DK-A1A3-01 15 43022925 43022925 C T CDAN1 Missense_Mutation p.R682Q 0.28 tolerated(1) benign(0.001) TCGA-DK-A1A3-01 15 45654374 45654374 C T GATM Missense_Mutation p.G402E 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 15 50518226 50518226 A T SLC27A2 Missense_Mutation p.K403N 0.27 deleterious(0.02) probably_damaging(0.931) TCGA-DK-A1A3-01 15 52553307 52553307 C T MYO5C Silent p.L355L 0.31 TCGA-DK-A1A3-01 15 59344515 59344515 G A RNF111 Missense_Mutation p.E298K 0.15 deleterious(0) benign(0.304) TCGA-DK-A1A3-01 15 63984612 63984612 G A HERC1 Missense_Mutation p.S1943L 0.16 benign(0.132) TCGA-DK-A1A3-01 15 65347506 65347506 C T RASL12 Missense_Mutation p.E178K 0.21 deleterious(0.02) possibly_damaging(0.495) TCGA-DK-A1A3-01 15 65864570 65864570 C T PTPLAD1 Intron 0.10 TCGA-DK-A1A3-01 15 68582398 68582398 C T FEM1B Silent p.V234V 0.07 TCGA-DK-A1A3-01 15 68600001 68600001 A G ITGA11 Missense_Mutation p.C1070R 0.72 deleterious(0) probably_damaging(0.986) TCGA-DK-A1A3-01 15 71174897 71174897 C T THAP10 Missense_Mutation p.D224N 0.15 deleterious_low_confidence(0.05) benign(0.305) TCGA-DK-A1A3-01 15 74336969 74336969 C T PML Missense_Mutation p.L757F 0.13 tolerated(0.05) benign(0.03) TCGA-DK-A1A3-01 15 89834895 89834895 G C FANCI Missense_Mutation p.E648Q 0.19 tolerated(0.17) benign(0.412) TCGA-DK-A1A3-01 15 90161397 90161397 G C TICRR Missense_Mutation p.G992A 0.37 tolerated(0.06) benign(0.444) TCGA-DK-A1A3-01 15 90431850 90431850 G A AP3S2 Missense_Mutation p.S59F 0.08 deleterious(0.01) benign(0.053) TCGA-DK-A1A3-01 15 93558043 93558043 C T CHD2 Nonsense_Mutation p.Q1604* 0.12 TCGA-DK-A1A3-01 15 93558052 93558052 C T CHD2 Missense_Mutation p.H1607Y 0.13 tolerated(0.84) benign(0.295) TCGA-DK-A1A3-01 16 1797074 1797074 C T MAPK8IP3 Silent p.A263A 0.14 TCGA-DK-A1A3-01 16 19126049 19126049 C T ITPRIPL2 Missense_Mutation p.S89L 0.24 tolerated(0.28) benign(0) TCGA-DK-A1A3-01 16 25189319 25189319 C T LCMT1 Intron 0.21 TCGA-DK-A1A3-01 16 29998037 29998037 G A TAOK2 Missense_Mutation p.R815K 0.11 deleterious_low_confidence(0.01) benign(0) TCGA-DK-A1A3-01 16 30620909 30620909 C T ZNF689 Missense_Mutation p.D86N 0.14 deleterious(0.01) benign(0.142) TCGA-DK-A1A3-01 16 30735080 30735080 C T SRCAP Silent p.T1445T 0.20 TCGA-DK-A1A3-01 16 339566 339566 G A AXIN1 Missense_Mutation p.P779L 0.14 tolerated(0.39) benign(0.002) TCGA-DK-A1A3-01 16 3406140 3406140 C G OR2C1 Missense_Mutation p.S67C 0.19 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 16 3807965 3807965 G A CREBBP Nonsense_Mutation p.Q1152* 0.19 TCGA-DK-A1A3-01 16 48177901 48177901 C T ABCC12 Silent p.V65V 0.07 TCGA-DK-A1A3-01 16 50339495 50339495 G A ADCY7 Silent p.T559T 0.37 TCGA-DK-A1A3-01 16 50339739 50339739 G A ADCY7 Silent p.L577L 0.40 TCGA-DK-A1A3-01 16 50383964 50383964 G A BRD7 Silent p.N187N 0.41 TCGA-DK-A1A3-01 16 58314274 58314274 C T PRSS54 Missense_Mutation p.E348K 0.24 tolerated(0.42) benign(0.017) TCGA-DK-A1A3-01 16 66957559 66957559 G A RRAD Missense_Mutation p.S170L 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 16 66976646 66976646 G A CES2 Missense_Mutation p.E524K 0.17 deleterious(0) probably_damaging(0.973) TCGA-DK-A1A3-01 16 67683380 67683380 C T RLTPR Missense_Mutation p.R593W 0.14 deleterious(0) possibly_damaging(0.475) TCGA-DK-A1A3-01 16 67859121 67859121 G A TSNAXIP1 Missense_Mutation p.D200N 0.24 tolerated(0.12) possibly_damaging(0.86) TCGA-DK-A1A3-01 16 67985184 67985184 C T SLC12A4 Missense_Mutation p.E388K 0.23 tolerated(0.41) benign(0.005) TCGA-DK-A1A3-01 16 72094456 72094456 G A HP Silent p.L296L 0.27 TCGA-DK-A1A3-01 16 72108235 72108235 G C HPR Missense_Mutation p.L48F 0.16 tolerated(0.19) benign(0.008) TCGA-DK-A1A3-01 16 77325188 77325188 C A ADAMTS18 Missense_Mutation p.G1126V 0.06 tolerated(0.2) benign(0.008) TCGA-DK-A1A3-01 16 87445991 87445991 G C ZCCHC14 Missense_Mutation p.S642W 0.19 deleterious(0) probably_damaging(0.986) TCGA-DK-A1A3-01 16 87446150 87446150 G C ZCCHC14 Missense_Mutation p.S589C 0.14 tolerated(0.08) possibly_damaging(0.907) TCGA-DK-A1A3-01 17 1371362 1371362 T C MYO1C Missense_Mutation p.Q939R 0.15 tolerated(0.35) probably_damaging(0.998) TCGA-DK-A1A3-01 17 1576684 1576684 G T PRPF8 Silent p.T1208T 0.14 TCGA-DK-A1A3-01 17 1576731 1576731 C T PRPF8 Missense_Mutation p.E1193K 0.23 deleterious(0.03) possibly_damaging(0.734) TCGA-DK-A1A3-01 17 17891266 17891266 G A LRRC48 Missense_Mutation p.E100K 0.16 deleterious(0.04) benign(0.424) TCGA-DK-A1A3-01 17 19251136 19251136 C T B9D1 Missense_Mutation p.R101Q 0.17 deleterious(0.02) possibly_damaging(0.745) TCGA-DK-A1A3-01 17 20217415 20217415 C T SPECC1 3'UTR 0.50 TCGA-DK-A1A3-01 17 2597243 2597243 C T CLUH Missense_Mutation p.C1022Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A3-01 17 26695680 26695680 C G VTN Missense_Mutation p.E281Q 0.10 tolerated(0.42) benign(0.196) TCGA-DK-A1A3-01 17 26817405 26817405 T C SLC13A2 Silent p.H104H 0.14 TCGA-DK-A1A3-01 17 26856166 26856166 C T FOXN1 Nonsense_Mutation p.Q252* 0.12 TCGA-DK-A1A3-01 17 27068520 27068520 G A NEK8 Missense_Mutation p.D661N 0.18 tolerated(0.36) benign(0.007) TCGA-DK-A1A3-01 17 27207618 27207618 C T FLOT2 Splice_Site p.X417_splice 0.13 TCGA-DK-A1A3-01 17 27401192 27401192 C G TIAF1 Missense_Mutation p.R9T 0.13 deleterious_low_confidence(0) benign(0.402) TCGA-DK-A1A3-01 17 27946710 27946710 C T CORO6 Missense_Mutation p.D94N 0.13 deleterious(0) probably_damaging(0.994) TCGA-DK-A1A3-01 17 28887196 28887196 A G TBC1D29 Missense_Mutation p.D25G 0.31 deleterious(0.05) benign(0.021) TCGA-DK-A1A3-01 17 32583877 32583877 C A CCL2 3'UTR 0.29 TCGA-DK-A1A3-01 17 34325917 34325917 G A CCL15 Missense_Mutation p.P41S 0.37 tolerated(1) benign(0.03) TCGA-DK-A1A3-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.17 deleterious(0) probably_damaging(0.994) TCGA-DK-A1A3-01 17 3856676 3856676 C T ATP2A3 Missense_Mutation p.V62M 0.10 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 17 39538574 39538574 C T KRT34 Silent p.Q17Q 0.18 TCGA-DK-A1A3-01 17 40070073 40070073 G A ACLY Silent p.F18F 0.12 TCGA-DK-A1A3-01 17 4086695 4086695 G A ANKFY1 Silent p.V692V 0.20 TCGA-DK-A1A3-01 17 42429721 42429721 G C GRN Missense_Mutation p.E476Q 0.17 tolerated(0.09) probably_damaging(0.987) TCGA-DK-A1A3-01 17 43196285 43196285 C T PLCD3 Silent p.L270L 0.39 TCGA-DK-A1A3-01 17 4462916 4462916 G A GGT6 Missense_Mutation p.P94S 0.38 tolerated(0.09) benign(0.07) TCGA-DK-A1A3-01 17 46128694 46128694 A G NFE2L1 Missense_Mutation p.I72V 0.23 tolerated(1) benign(0.001) TCGA-DK-A1A3-01 17 48191613 48191613 C T SAMD14 Missense_Mutation p.G322R 0.22 deleterious(0.02) benign(0.413) TCGA-DK-A1A3-01 17 48434547 48434547 G A XYLT2 Silent p.L625L 0.26 TCGA-DK-A1A3-01 17 48460409 48460409 G A LRRC59 Silent p.V288V 0.36 TCGA-DK-A1A3-01 17 5086687 5086687 G A ZNF594 Missense_Mutation p.H289Y 0.11 deleterious(0) probably_damaging(0.99) TCGA-DK-A1A3-01 17 5462822 5462822 G A NLRP1 Silent p.I398I 0.12 TCGA-DK-A1A3-01 17 56809868 56809868 C A RAD51C Missense_Mutation p.P330H 0.24 deleterious(0) probably_damaging(0.987) TCGA-DK-A1A3-01 17 65141898 65141898 T C HELZ Silent p.V910V 0.09 TCGA-DK-A1A3-01 17 6610016 6610016 G C SLC13A5 Missense_Mutation p.L105V 0.10 deleterious(0.01) possibly_damaging(0.85) TCGA-DK-A1A3-01 17 67075194 67075194 C G ABCA6 Missense_Mutation p.E1592Q 0.18 deleterious(0.01) benign(0.285) TCGA-DK-A1A3-01 17 6930283 6930283 G C BCL6B Silent p.R400R 0.16 TCGA-DK-A1A3-01 17 7160258 7160258 C T ELP5 Silent p.L180L 0.33 TCGA-DK-A1A3-01 17 7217447 7217447 G A GPS2 Nonsense_Mutation p.Q117* 0.17 TCGA-DK-A1A3-01 17 7217707 7217707 C A GPS2 Nonsense_Mutation p.E74* 0.28 TCGA-DK-A1A3-01 17 72301563 72301563 C T DNAI2 Missense_Mutation p.S398L 0.37 deleterious(0) possibly_damaging(0.63) TCGA-DK-A1A3-01 17 7250445 7250445 C T ACAP1 Silent p.A409A 0.15 TCGA-DK-A1A3-01 17 72842905 72842905 T C GRIN2C Missense_Mutation p.K719R 0.34 deleterious(0.03) probably_damaging(0.986) TCGA-DK-A1A3-01 17 72929508 72929508 C T OTOP2 Silent p.F519F 0.20 TCGA-DK-A1A3-01 17 7297443 7297443 G C TMEM256-PLSCR3 5'UTR 0.21 TCGA-DK-A1A3-01 17 73017052 73017052 G A ICT1 Silent p.K191K 0.30 TCGA-DK-A1A3-01 17 73839336 73839336 G C UNC13D Silent p.L55L 0.18 TCGA-DK-A1A3-01 17 74387282 74387282 G A UBE2O Silent p.G1207G 0.12 TCGA-DK-A1A3-01 17 74639797 74639797 C T ST6GALNAC1 5'UTR 0.21 TCGA-DK-A1A3-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.41 TCGA-DK-A1A3-01 17 7612706 7612706 G A EFNB3 Missense_Mutation p.G279S 0.21 tolerated(0.09) benign(0.131) TCGA-DK-A1A3-01 17 8092370 8092370 C G C17orf59 3'UTR 0.14 TCGA-DK-A1A3-01 17 8791859 8791859 G A PIK3R5 Silent p.R415R 0.48 TCGA-DK-A1A3-01 18 44626625 44626625 G A KATNAL2 Missense_Mutation p.E387K 0.38 tolerated(0.63) benign(0.003) TCGA-DK-A1A3-01 18 47428979 47428979 C A MYO5B Silent p.R932R 0.34 TCGA-DK-A1A3-01 18 47428980 47428980 C A MYO5B Missense_Mutation p.R932L 0.34 deleterious(0) probably_damaging(0.932) TCGA-DK-A1A3-01 18 50977029 50977029 G C DCC Missense_Mutation p.R1130T 0.12 deleterious(0.01) possibly_damaging(0.694) TCGA-DK-A1A3-01 18 51731413 51731413 C T MBD2 Silent p.Q219Q 0.32 TCGA-DK-A1A3-01 18 5397338 5397338 C T EPB41L3 Missense_Mutation p.E854K 0.14 tolerated(0.09) benign(0.129) TCGA-DK-A1A3-01 18 67562996 67562996 T C CD226 Missense_Mutation p.Y223C 0.14 tolerated(0.18) benign(0) TCGA-DK-A1A3-01 18 67871418 67871418 G C RTTN Missense_Mutation p.L101V 0.12 deleterious(0) possibly_damaging(0.729) TCGA-DK-A1A3-01 18 77474710 77474710 A C CTDP1 Missense_Mutation p.Q417P 0.58 tolerated(0.26) benign(0.034) TCGA-DK-A1A3-01 19 10599968 10599969 - CA KEAP1 Frame_Shift_Ins p.Y537Afs*12 0.26 TCGA-DK-A1A3-01 19 10610637 10610637 C T KEAP1 Missense_Mutation p.E25K 0.20 tolerated_low_confidence(0.06) benign(0.002) TCGA-DK-A1A3-01 19 10943614 10943614 C T TMED1 3'UTR 0.24 TCGA-DK-A1A3-01 19 12060204 12060204 C T ZNF700 Silent p.F455F 0.19 TCGA-DK-A1A3-01 19 16633881 16633881 C T CHERP Silent p.L654L 0.16 TCGA-DK-A1A3-01 19 16634026 16634026 C G CHERP Missense_Mutation p.G606A 0.14 deleterious(0.04) benign(0.05) TCGA-DK-A1A3-01 19 16640540 16640540 C T CHERP Missense_Mutation p.E350K 0.54 tolerated(0.23) probably_damaging(0.931) TCGA-DK-A1A3-01 19 17160668 17160668 G A HAUS8 3'UTR 0.14 TCGA-DK-A1A3-01 19 17213295 17213295 C G MYO9B Silent p.L256L 0.25 TCGA-DK-A1A3-01 19 17440786 17440786 G A ANO8 Silent p.L437L 0.14 TCGA-DK-A1A3-01 19 18321950 18321950 G C PDE4C Nonsense_Mutation p.S643* 0.08 TCGA-DK-A1A3-01 19 18963840 18963840 G A UPF1 Silent p.K339K 0.36 TCGA-DK-A1A3-01 19 19135806 19135806 C G SUGP2 Missense_Mutation p.E451Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 19 19431303 19431303 C T SUGP1 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DK-A1A3-01 19 19612021 19612021 G A GATAD2A Silent p.K432K 0.13 TCGA-DK-A1A3-01 19 20728335 20728335 C G ZNF737 Missense_Mutation p.G225A 0.05 deleterious(0.04) probably_damaging(0.966) TCGA-DK-A1A3-01 19 20748530 20748530 C T ZNF737 5'UTR 0.19 TCGA-DK-A1A3-01 19 20844303 20844303 T C ZNF626 5'UTR 0.22 TCGA-DK-A1A3-01 19 21116827 21116827 C T ZNF85 Intron 0.21 TCGA-DK-A1A3-01 19 21580005 21580005 C T ZNF493 5'UTR 0.25 TCGA-DK-A1A3-01 19 2853251 2853251 T A ZNF555 Nonsense_Mutation p.Y396* 0.13 TCGA-DK-A1A3-01 19 2987903 2987903 G A TLE6 Silent p.R211R 0.41 TCGA-DK-A1A3-01 19 3157790 3157790 C T GNA15 Missense_Mutation p.T270I 0.14 deleterious(0) benign(0.158) TCGA-DK-A1A3-01 19 34818939 34818939 G A KIAA0355 Silent p.Q329Q 0.27 TCGA-DK-A1A3-01 19 35169705 35169705 G C ZNF302 5'UTR 0.12 TCGA-DK-A1A3-01 19 3551099 3551099 T C MFSD12 Missense_Mutation p.Y131C 0.17 probably_damaging(0.992) TCGA-DK-A1A3-01 19 35758034 35758034 C G LSR Silent p.L437L 0.14 TCGA-DK-A1A3-01 19 36591653 36591653 G A WDR62 Missense_Mutation p.E915K 0.15 tolerated(0.1) benign(0.019) TCGA-DK-A1A3-01 19 36884578 36884578 C T ZFP82 Missense_Mutation p.G222S 0.19 tolerated(0.11) benign(0.026) TCGA-DK-A1A3-01 19 37382767 37382767 G C ZNF829 Nonsense_Mutation p.S390* 0.07 TCGA-DK-A1A3-01 19 38190458 38190458 G T ZNF607 Missense_Mutation p.H192N 0.07 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A3-01 19 3984133 3984133 C G EEF2 Splice_Site p.X73_splice 0.28 TCGA-DK-A1A3-01 19 40408603 40408603 G C FCGBP Silent p.A1412A 0.25 TCGA-DK-A1A3-01 19 40480725 40480725 T C PSMC4 Silent p.H221H 0.23 TCGA-DK-A1A3-01 19 41884361 41884361 C T TMEM91 Silent p.F49F 0.31 TCGA-DK-A1A3-01 19 42213827 42213827 G T CEA Missense_Mutation p.R98L 0.14 deleterious(0) benign(0.388) TCGA-DK-A1A3-01 19 42744116 42744116 C G AC006486.9 Missense_Mutation p.K67N 0.13 deleterious(0) probably_damaging(0.936) TCGA-DK-A1A3-01 19 45873455 45873455 T C ERCC2 Missense_Mutation p.Y14C 0.15 deleterious(0) probably_damaging(0.977) TCGA-DK-A1A3-01 19 45899596 45899596 G A PPP1R13L Missense_Mutation p.R271C 0.28 deleterious(0) benign(0.022) TCGA-DK-A1A3-01 19 49116416 49116416 C T FAM83E Missense_Mutation p.E72K 0.65 deleterious(0.04) benign(0.422) TCGA-DK-A1A3-01 19 49377076 49377076 G A PPP1R15A Missense_Mutation p.E196K 0.42 tolerated(0.37) possibly_damaging(0.899) TCGA-DK-A1A3-01 19 49481249 49481249 G A GYS1 Missense_Mutation p.P414S 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 19 49658329 49658329 C T HRC Missense_Mutation p.E56K 0.35 tolerated(0.12) benign(0.007) TCGA-DK-A1A3-01 19 53383882 53383882 G A ZNF320 Silent p.C499C 0.14 TCGA-DK-A1A3-01 19 53454109 53454109 G A ZNF816 Missense_Mutation p.H307Y 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 19 53573363 53573363 C G ZNF160 Missense_Mutation p.E142Q 0.44 tolerated(0.08) possibly_damaging(0.727) TCGA-DK-A1A3-01 19 54705081 54705081 G C RPS9 Missense_Mutation p.R10P 0.32 tolerated(0.07) possibly_damaging(0.897) TCGA-DK-A1A3-01 19 55667621 55667621 C T TNNI3 Missense_Mutation p.S77N 0.17 tolerated(0.28) benign(0.001) TCGA-DK-A1A3-01 19 57802811 57802811 G C ZNF460 Missense_Mutation p.S301T 0.13 tolerated(0.88) benign(0.007) TCGA-DK-A1A3-01 19 58565117 58565117 G A ZSCAN1 Missense_Mutation p.E309K 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A1A3-01 19 58944607 58944607 T C ZNF132 3'UTR 0.12 TCGA-DK-A1A3-01 19 59011983 59011983 G A SLC27A5 Missense_Mutation p.P425S 0.42 tolerated(0.24) probably_damaging(1) TCGA-DK-A1A3-01 19 6177390 6177390 C T ACSBG2 Nonsense_Mutation p.Q297* 0.34 TCGA-DK-A1A3-01 19 7083113 7083113 C T ZNF557 Silent p.F217F 0.36 TCGA-DK-A1A3-01 19 7684884 7684884 C T XAB2 Missense_Mutation p.E782K 0.19 tolerated(0.53) benign(0.038) TCGA-DK-A1A3-01 19 8136970 8136970 G T FBN3 Silent p.R2684R 0.19 TCGA-DK-A1A3-01 19 9071731 9071731 C T MUC16 Missense_Mutation p.D5239N 0.16 unknown(0) TCGA-DK-A1A3-01 19 9077704 9077704 G A MUC16 Nonsense_Mutation p.Q3248* 0.12 TCGA-DK-A1A3-01 1 100212977 100212977 G A FRRS1 Missense_Mutation p.S69L 0.20 deleterious(0.03) probably_damaging(0.922) TCGA-DK-A1A3-01 1 100488128 100488128 C T SLC35A3 3'UTR 0.39 TCGA-DK-A1A3-01 1 104113149 104113149 C G AMY2B Intron 0.14 TCGA-DK-A1A3-01 1 109276098 109276098 C T FNDC7 Missense_Mutation p.S695L 0.19 deleterious(0) possibly_damaging(0.802) TCGA-DK-A1A3-01 1 110466437 110466437 G A CSF1 Silent p.P398P 0.20 TCGA-DK-A1A3-01 1 110884629 110884629 G A RBM15 Missense_Mutation p.D868N 0.17 tolerated(0.19) benign(0.268) TCGA-DK-A1A3-01 1 11115915 11115915 C T SRM Missense_Mutation p.V230M 0.14 tolerated(0.06) possibly_damaging(0.836) TCGA-DK-A1A3-01 1 111730906 111730906 G A DENND2D Missense_Mutation p.R396W 0.19 tolerated(0.27) benign(0.014) TCGA-DK-A1A3-01 1 111983905 111983905 C T WDR77 Missense_Mutation p.V326I 0.26 tolerated(0.26) benign(0) TCGA-DK-A1A3-01 1 113217604 113217604 C T MOV10 Missense_Mutation p.R24W 0.15 deleterious(0.02) benign(0.386) TCGA-DK-A1A3-01 1 113234326 113234326 G T MOV10 Silent p.G292G 0.20 TCGA-DK-A1A3-01 1 113657463 113657463 G A LRIG2 Missense_Mutation p.R832K 0.17 deleterious(0) possibly_damaging(0.878) TCGA-DK-A1A3-01 1 114524373 114524373 G A OLFML3 Silent p.K401K 0.23 TCGA-DK-A1A3-01 1 13001237 13001237 A G PRAMEF6 Missense_Mutation p.V149A 0.06 deleterious(0) possibly_damaging(0.529) TCGA-DK-A1A3-01 1 150238976 150238976 G C APH1A Missense_Mutation p.I230M 0.12 tolerated(0.18) benign(0.016) TCGA-DK-A1A3-01 1 150240466 150240466 C T APH1A Missense_Mutation p.V59M 0.36 deleterious(0.03) benign(0.272) TCGA-DK-A1A3-01 1 152281379 152281379 C G FLG Missense_Mutation p.E1995Q 0.11 possibly_damaging(0.728) TCGA-DK-A1A3-01 1 152327225 152327225 C T FLG2 Missense_Mutation p.G1013S 0.31 unknown(0) TCGA-DK-A1A3-01 1 152732377 152732377 T C KPRP Missense_Mutation p.S105P 0.30 deleterious(0.04) benign(0) TCGA-DK-A1A3-01 1 154000004 154000004 G A NUP210L Nonsense_Mutation p.Q1309* 0.25 TCGA-DK-A1A3-01 1 155177629 155177629 G A THBS3 Silent p.L13L 0.14 TCGA-DK-A1A3-01 1 155880497 155880497 G A RIT1 Missense_Mutation p.S36L 0.23 tolerated(0.72) benign(0.001) TCGA-DK-A1A3-01 1 156127890 156127890 G C SEMA4A Missense_Mutation p.K110N 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-DK-A1A3-01 1 156911698 156911698 G - ARHGEF11 Frame_Shift_Del p.P1137Qfs*16 0.19 TCGA-DK-A1A3-01 1 156918212 156918212 C T ARHGEF11 Silent p.E668E 0.17 TCGA-DK-A1A3-01 1 158641938 158641938 C T SPTA1 Missense_Mutation p.E467K 0.17 tolerated(0.5) benign(0.002) TCGA-DK-A1A3-01 1 158747226 158747226 G A OR6N2 Missense_Mutation p.S67F 0.11 deleterious(0) probably_damaging(0.963) TCGA-DK-A1A3-01 1 161496042 161496042 G C HSPA6 Missense_Mutation p.E532Q 0.11 deleterious_low_confidence(0.05) benign(0.038) TCGA-DK-A1A3-01 1 1663882 1663882 G A SLC35E2 3'UTR 0.13 TCGA-DK-A1A3-01 1 166818747 166818747 C G POGK Missense_Mutation p.R311G 0.12 tolerated(0.31) probably_damaging(0.988) TCGA-DK-A1A3-01 1 167852770 167852770 C G ADCY10 Missense_Mutation p.E309Q 0.20 tolerated(0.51) benign(0.044) TCGA-DK-A1A3-01 1 169494148 169494148 T C F5 Splice_Site p.X1906_splice 0.30 TCGA-DK-A1A3-01 1 17249254 17249254 G A CROCC Missense_Mutation p.E53K 0.23 probably_damaging(0.969) TCGA-DK-A1A3-01 1 173839578 173839578 C T ZBTB37 Missense_Mutation p.S72L 0.33 deleterious(0) possibly_damaging(0.753) TCGA-DK-A1A3-01 1 182822501 182822501 G A DHX9 Missense_Mutation p.G142E 0.24 tolerated(0.15) probably_damaging(0.989) TCGA-DK-A1A3-01 1 183518386 183518386 C T SMG7 Missense_Mutation p.S933F 0.31 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-DK-A1A3-01 1 186044020 186044020 C G HMCN1 Missense_Mutation p.Q2763E 0.19 benign(0.409) TCGA-DK-A1A3-01 1 19487565 19487565 A G UBR4 Missense_Mutation p.I1751T 0.06 benign(0.013) TCGA-DK-A1A3-01 1 19595155 19595155 C A AKR7L Nonsense_Mutation p.E71* 0.13 TCGA-DK-A1A3-01 1 197070599 197070599 C T ASPM Silent p.Q2594Q 0.17 TCGA-DK-A1A3-01 1 201185733 201185733 G A IGFN1 Silent p.L3149L 0.15 TCGA-DK-A1A3-01 1 20141360 20141360 A T RNF186 Missense_Mutation p.S79T 0.59 tolerated(0.15) benign(0.068) TCGA-DK-A1A3-01 1 202718108 202718108 C T KDM5B Missense_Mutation p.D661N 0.23 deleterious(0) benign(0.199) TCGA-DK-A1A3-01 1 202935922 202935922 G C CYB5R1 Silent p.L40L 0.08 TCGA-DK-A1A3-01 1 203743331 203743331 A G LAX1 Missense_Mutation p.D240G 0.35 deleterious(0.03) benign(0.271) TCGA-DK-A1A3-01 1 204129688 204129688 G C REN Silent p.T164T 0.22 TCGA-DK-A1A3-01 1 207228122 207228122 T C PFKFB2 Silent p.N20N 0.17 TCGA-DK-A1A3-01 1 207495889 207495889 C T CD55 Missense_Mutation p.S88L 0.31 deleterious(0) possibly_damaging(0.738) TCGA-DK-A1A3-01 1 210010531 210010531 G A DIEXF Missense_Mutation p.R346K 0.10 tolerated(0.06) probably_damaging(0.923) TCGA-DK-A1A3-01 1 211966441 211966441 C T LPGAT1 Silent p.L110L 0.29 TCGA-DK-A1A3-01 1 212588106 212588106 G A TMEM206 5'UTR 0.21 TCGA-DK-A1A3-01 1 213032136 213032136 C T FLVCR1 Silent p.F114F 0.33 TCGA-DK-A1A3-01 1 213415370 213415370 G A RPS6KC1 Missense_Mutation p.D851N 0.27 tolerated(0.1) benign(0.121) TCGA-DK-A1A3-01 1 220439995 220439995 G T RAB3GAP2 Intron 0.24 TCGA-DK-A1A3-01 1 222743964 222743964 G A TAF1A Silent p.F216F 0.34 TCGA-DK-A1A3-01 1 225147899 225147899 G A DNAH14 Missense_Mutation p.E88K 0.36 tolerated(0.3) benign(0.004) TCGA-DK-A1A3-01 1 228434453 228434453 T A OBSCN Missense_Mutation p.Y1420N 0.30 probably_damaging(0.999) TCGA-DK-A1A3-01 1 22924702 22924702 G C EPHA8 Silent p.L725L 0.17 TCGA-DK-A1A3-01 1 229771854 229771854 C T URB2 Silent p.L498L 0.31 TCGA-DK-A1A3-01 1 229772944 229772944 G A URB2 Missense_Mutation p.E862K 0.12 tolerated(0.38) benign(0.34) TCGA-DK-A1A3-01 1 229773668 229773668 C T URB2 Missense_Mutation p.S1103L 0.20 tolerated(1) benign(0.001) TCGA-DK-A1A3-01 1 230819378 230819378 C T COG2 Missense_Mutation p.P409S 0.30 tolerated(0.23) benign(0.074) TCGA-DK-A1A3-01 1 23713897 23713897 C T TCEA3 Missense_Mutation p.E279K 0.61 deleterious(0) probably_damaging(0.99) TCGA-DK-A1A3-01 1 23848342 23848342 T C E2F2 Missense_Mutation p.N189D 0.11 deleterious(0.01) possibly_damaging(0.882) TCGA-DK-A1A3-01 1 240341299 240341299 C T FMN2 Nonsense_Mutation p.R621* 0.29 TCGA-DK-A1A3-01 1 242048771 242048771 C G EXO1 Missense_Mutation p.I789M 0.18 deleterious(0.02) possibly_damaging(0.635) TCGA-DK-A1A3-01 1 244614999 244614999 C T ADSS Missense_Mutation p.E41K 0.25 deleterious(0.01) possibly_damaging(0.876) TCGA-DK-A1A3-01 1 24661179 24661179 G A GRHL3 Silent p.R83R 0.08 TCGA-DK-A1A3-01 1 247752506 247752506 C T OR2G2 Missense_Mutation p.T282I 0.38 deleterious(0) probably_damaging(0.992) TCGA-DK-A1A3-01 1 27216404 27216404 C T GPN2 Missense_Mutation p.E62K 0.74 tolerated(0.06) benign(0.393) TCGA-DK-A1A3-01 1 27675622 27675622 G A SYTL1 Missense_Mutation p.E171K 0.27 tolerated(0.18) benign(0.107) TCGA-DK-A1A3-01 1 27695779 27695779 G C FCN3 Nonsense_Mutation p.S283* 0.14 TCGA-DK-A1A3-01 1 28835119 28835119 G T SNORA73B RNA 0.30 TCGA-DK-A1A3-01 1 31346158 31346158 C T SDC3 Missense_Mutation p.R410H 0.17 deleterious(0) unknown(0) TCGA-DK-A1A3-01 1 33138430 33138430 C T RBBP4 Silent p.F380F 0.14 TCGA-DK-A1A3-01 1 3319489 3319489 G C PRDM16 Missense_Mutation p.E271Q 0.23 tolerated(0.15) benign(0.045) TCGA-DK-A1A3-01 1 36181308 36181308 G A C1orf216 Silent p.I205I 0.16 TCGA-DK-A1A3-01 1 37947425 37947425 C T ZC3H12A Silent p.F269F 0.38 TCGA-DK-A1A3-01 1 38197174 38197174 G A EPHA10 Silent p.R524R 0.35 TCGA-DK-A1A3-01 1 39797480 39797480 G C MACF1 Intron 0.06 TCGA-DK-A1A3-01 1 39799895 39799895 G T MACF1 Intron 0.10 TCGA-DK-A1A3-01 1 39800966 39800966 G C MACF1 Intron 0.08 TCGA-DK-A1A3-01 1 39876601 39876601 C T KIAA0754 Nonsense_Mutation p.Q86* 0.17 TCGA-DK-A1A3-01 1 43042700 43042700 G A CCDC30 Missense_Mutation p.E289K 0.19 deleterious(0) possibly_damaging(0.895) TCGA-DK-A1A3-01 1 44424218 44424218 C G IPO13 Missense_Mutation p.S612W 0.07 deleterious(0) probably_damaging(0.963) TCGA-DK-A1A3-01 1 44435796 44435796 G A DPH2 5'UTR 0.35 TCGA-DK-A1A3-01 1 44463059 44463059 G A SLC6A9 3'Flank 0.52 TCGA-DK-A1A3-01 1 44785309 44785309 G C ERI3 Missense_Mutation p.F199L 0.13 deleterious(0.01) possibly_damaging(0.875) TCGA-DK-A1A3-01 1 45269324 45269324 C T PLK3 Silent p.L375L 0.22 TCGA-DK-A1A3-01 1 45484612 45484612 C G ZSWIM5 Missense_Mutation p.M1024I 0.11 tolerated(0.12) unknown(0) TCGA-DK-A1A3-01 1 46034629 46034629 C T AKR1A1 Silent p.I261I 0.57 TCGA-DK-A1A3-01 1 46976269 46976269 T G DMBX1 Missense_Mutation p.D92E 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 1 59142623 59142623 C T MYSM1 Silent p.L455L 0.32 TCGA-DK-A1A3-01 1 6173059 6173059 C G CHD5 Splice_Site p.X1638_splice 0.18 TCGA-DK-A1A3-01 1 63024891 63024891 C T DOCK7 Missense_Mutation p.D734N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1A3-01 1 63066796 63066796 C G ANGPTL3 Missense_Mutation p.S217C 0.14 tolerated(0.17) possibly_damaging(0.592) TCGA-DK-A1A3-01 1 6525566 6525567 - G TNFRSF25 Frame_Shift_Ins p.R32Qfs*3 0.28 TCGA-DK-A1A3-01 1 6649195 6649195 G A ZBTB48 Missense_Mutation p.E664K 0.15 tolerated_low_confidence(0.11) benign(0.069) TCGA-DK-A1A3-01 1 67411832 67411832 G T MIER1 Splice_Site p.X65_splice 0.23 TCGA-DK-A1A3-01 1 67411833 67411833 G T MIER1 Missense_Mutation p.G65V 0.25 tolerated(0.17) possibly_damaging(0.622) TCGA-DK-A1A3-01 1 6885189 6885189 C G CAMTA1 Missense_Mutation p.I51M 0.21 deleterious(0) probably_damaging(0.964) TCGA-DK-A1A3-01 1 70728465 70728465 C T ANKRD13C Missense_Mutation p.D521N 0.33 tolerated(0.24) benign(0.042) TCGA-DK-A1A3-01 1 78430866 78430866 G A FUBP1 Missense_Mutation p.P175S 0.17 tolerated(0.11) probably_damaging(0.98) TCGA-DK-A1A3-01 1 7907829 7907829 G C UTS2 Silent p.V139V 0.14 TCGA-DK-A1A3-01 1 84867740 84867740 A G DNASE2B Silent p.L94L 0.14 TCGA-DK-A1A3-01 1 86426951 86426951 A T COL24A1 Missense_Mutation p.I848N 0.13 tolerated(0.18) possibly_damaging(0.798) TCGA-DK-A1A3-01 1 91406420 91406420 G A ZNF644 Missense_Mutation p.S164F 0.16 deleterious(0.02) benign(0.281) TCGA-DK-A1A3-01 1 93580289 93580289 G C MTF2 Missense_Mutation p.E111Q 0.16 tolerated(0.13) benign(0.038) TCGA-DK-A1A3-01 1 95363303 95363303 A C CNN3 Missense_Mutation p.Y329D 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A1A3-01 1 95363318 95363318 C T CNN3 Missense_Mutation p.D324N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.829) TCGA-DK-A1A3-01 1 9770486 9770486 A G PIK3CD 5'UTR 0.38 TCGA-DK-A1A3-01 1 99387500 99387500 G A LPPR5 Nonsense_Mutation p.R246* 0.23 TCGA-DK-A1A3-01 20 2636004 2636004 G A NOP56 Silent p.V201V 0.15 TCGA-DK-A1A3-01 20 30385318 30385318 G A TPX2 Missense_Mutation p.E649K 0.21 deleterious(0.02) benign(0.357) TCGA-DK-A1A3-01 20 30433105 30433105 G A FOXS1 Missense_Mutation p.R81C 0.33 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 20 31376814 31376814 C G DNMT3B Missense_Mutation p.S270C 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 20 32659982 32659982 G C RALY Missense_Mutation p.K34N 0.15 deleterious(0.01) benign(0.062) TCGA-DK-A1A3-01 20 32664519 32664519 G A RALY Missense_Mutation p.E186K 0.16 deleterious(0.03) benign(0.358) TCGA-DK-A1A3-01 20 34782172 34782172 G A EPB41L1 Missense_Mutation p.D447N 0.19 deleterious(0.01) possibly_damaging(0.76) TCGA-DK-A1A3-01 20 37621005 37621005 C T DHX35 Silent p.I173I 0.27 TCGA-DK-A1A3-01 20 40065975 40065975 C T CHD6 Splice_Site p.X1336_splice 0.32 TCGA-DK-A1A3-01 20 42196637 42196637 G C SGK2 Missense_Mutation p.E136Q 0.14 tolerated(0.12) probably_damaging(0.917) TCGA-DK-A1A3-01 20 43141486 43141486 G C SERINC3 Missense_Mutation p.F117L 0.13 tolerated(0.38) benign(0.001) TCGA-DK-A1A3-01 20 43243233 43243233 C T PKIG Silent p.I12I 0.28 TCGA-DK-A1A3-01 20 43384671 43384671 G A RIMS4 3'UTR 0.21 TCGA-DK-A1A3-01 20 43399923 43399923 C G RIMS4 Missense_Mutation p.E78Q 0.17 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DK-A1A3-01 20 45923508 45923508 C T ZMYND8 Missense_Mutation p.E157K 0.28 deleterious(0) probably_damaging(0.992) TCGA-DK-A1A3-01 20 47704592 47704592 C T CSE1L Silent p.Y590Y 0.26 TCGA-DK-A1A3-01 20 48503324 48503324 C T SLC9A8 Silent p.L525L 0.30 TCGA-DK-A1A3-01 20 50255994 50255994 C T ATP9A Missense_Mutation p.R519Q 0.23 deleterious(0) probably_damaging(0.984) TCGA-DK-A1A3-01 20 51871960 51871960 G T TSHZ2 Nonsense_Mutation p.E655* 0.11 TCGA-DK-A1A3-01 20 56090725 56090725 G A CTCFL Intron 0.14 TCGA-DK-A1A3-01 20 57480468 57480468 G C GNAS Missense_Mutation p.E798Q 0.11 tolerated(0.07) benign(0.119) TCGA-DK-A1A3-01 20 62195447 62195447 C T HELZ2 Silent p.L1576L 0.38 TCGA-DK-A1A3-01 20 62838960 62838960 C G MYT1 Silent p.V137V 0.13 TCGA-DK-A1A3-01 20 8113380 8113380 T C PLCB1 Missense_Mutation p.F28L 0.45 deleterious(0) benign(0.001) TCGA-DK-A1A3-01 21 26946337 26946337 C T MIR155HG RNA 0.44 TCGA-DK-A1A3-01 21 33044531 33044531 C G SCAF4 Missense_Mutation p.L875F 0.23 unknown(0) TCGA-DK-A1A3-01 21 35153820 35153820 A G ITSN1 Missense_Mutation p.Q551R 0.11 tolerated(0.57) benign(0.023) TCGA-DK-A1A3-01 21 37741509 37741509 G A MORC3 Missense_Mutation p.D615N 0.36 tolerated(0.45) benign(0.002) TCGA-DK-A1A3-01 21 38519889 38519889 G A TTC3 Missense_Mutation p.D668N 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 21 39755527 39755527 G A ERG Missense_Mutation p.S420L 0.47 deleterious(0) benign(0.183) TCGA-DK-A1A3-01 21 40559037 40559037 G A BRWD1 Missense_Mutation p.S2293F 0.27 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-DK-A1A3-01 21 47424000 47424000 G A COL6A1 3'UTR 0.14 TCGA-DK-A1A3-01 21 47851851 47851851 G C PCNT Missense_Mutation p.E2825Q 0.16 possibly_damaging(0.727) TCGA-DK-A1A3-01 22 18209590 18209590 G C BCL2L13 Missense_Mutation p.E250Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-DK-A1A3-01 22 18210321 18210321 G C BCL2L13 3'UTR 0.20 TCGA-DK-A1A3-01 22 19920068 19920068 G A TXNRD2 Intron 0.17 TCGA-DK-A1A3-01 22 22161970 22161970 G A MAPK1 Silent p.I95I 0.07 TCGA-DK-A1A3-01 22 22868615 22868615 C T ZNF280A Missense_Mutation p.R447K 0.19 tolerated(1) benign(0.002) TCGA-DK-A1A3-01 22 27019252 27019252 G C CRYBA4 Missense_Mutation p.E32Q 0.13 deleterious(0.05) benign(0.063) TCGA-DK-A1A3-01 22 36681274 36681274 G A MYH9 Silent p.V1792V 0.23 TCGA-DK-A1A3-01 22 42609885 42609885 G T TCF20 Missense_Mutation p.S476Y 0.13 probably_damaging(0.998) TCGA-DK-A1A3-01 22 42610021 42610021 G C TCF20 Missense_Mutation p.H431D 0.18 possibly_damaging(0.576) TCGA-DK-A1A3-01 22 43538972 43538972 G A MCAT Missense_Mutation p.S128L 0.33 deleterious(0) probably_damaging(0.997) TCGA-DK-A1A3-01 22 43634897 43634897 C T SCUBE1 Missense_Mutation p.R264Q 0.29 tolerated(0.3) probably_damaging(0.967) TCGA-DK-A1A3-01 22 46932099 46932099 C T CELSR1 Silent p.V323V 0.10 TCGA-DK-A1A3-01 22 50928201 50928201 C T MIOX Silent p.C258C 0.33 TCGA-DK-A1A3-01 2 101622467 101622467 G A RPL31 Missense_Mutation p.E94K 0.12 tolerated(0.14) benign(0.062) TCGA-DK-A1A3-01 2 101622473 101622473 G A RPL31 Missense_Mutation p.E96K 0.13 tolerated(0.08) possibly_damaging(0.483) TCGA-DK-A1A3-01 2 101622476 101622476 G A RPL31 Missense_Mutation p.D97N 0.11 tolerated(0.11) benign(0.363) TCGA-DK-A1A3-01 2 103068411 103068411 C T IL18RAP Missense_Mutation p.P524S 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 2 103068499 103068499 C A IL18RAP Missense_Mutation p.A553D 0.31 deleterious(0.02) benign(0.063) TCGA-DK-A1A3-01 2 103236427 103236427 G A SLC9A2 Silent p.P40P 0.20 TCGA-DK-A1A3-01 2 109111783 109111783 G C GCC2 Missense_Mutation p.R1495P 0.22 tolerated(0.09) possibly_damaging(0.72) TCGA-DK-A1A3-01 2 109398587 109398587 G A RANBP2 Missense_Mutation p.E2922K 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1A3-01 2 111691109 111691109 G A ACOXL Missense_Mutation p.E317K 0.10 tolerated(0.29) benign(0.446) TCGA-DK-A1A3-01 2 112592358 112592358 G A ANAPC1 Missense_Mutation p.S736L 0.17 tolerated(0.33) benign(0.001) TCGA-DK-A1A3-01 2 112733015 112733015 G A MERTK Silent p.V370V 0.31 TCGA-DK-A1A3-01 2 112779055 112779055 A G MERTK Missense_Mutation p.Y749C 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 2 113417182 113417182 G T SLC20A1 Missense_Mutation p.V484F 0.28 tolerated(0.28) benign(0.094) TCGA-DK-A1A3-01 2 113417183 113417183 T C SLC20A1 Missense_Mutation p.V484A 0.27 tolerated(0.45) benign(0.001) TCGA-DK-A1A3-01 2 113941019 113941019 C G PSD4 Missense_Mutation p.S329C 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.784) TCGA-DK-A1A3-01 2 11765299 11765299 C T GREB1 Silent p.D1389D 0.13 TCGA-DK-A1A3-01 2 11774306 11774306 C T GREB1 Missense_Mutation p.H1681Y 0.13 deleterious(0) possibly_damaging(0.674) TCGA-DK-A1A3-01 2 120413990 120413990 G A PCDP1 Missense_Mutation p.E823K 0.16 tolerated(0.45) benign(0.146) TCGA-DK-A1A3-01 2 120709702 120709702 A T PTPN4 Missense_Mutation p.N604Y 0.11 deleterious(0.04) probably_damaging(0.946) TCGA-DK-A1A3-01 2 128408472 128408473 - T GPR17 Frame_Shift_Ins p.I85Hfs*246 0.24 TCGA-DK-A1A3-01 2 128750795 128750795 G C SAP130 Missense_Mutation p.I507M 0.23 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DK-A1A3-01 2 130858257 130858257 C T POTEF Missense_Mutation p.D412N 0.53 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-DK-A1A3-01 2 136389328 136389328 G C R3HDM1 Missense_Mutation p.D180H 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 2 136682034 136682034 G A DARS Missense_Mutation p.S200F 0.43 deleterious(0) possibly_damaging(0.866) TCGA-DK-A1A3-01 2 152127234 152127234 T C NMI Silent p.Q299Q 0.37 TCGA-DK-A1A3-01 2 152293454 152293454 C T RIF1 Missense_Mutation p.H437Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 2 163236516 163236516 C T KCNH7 Missense_Mutation p.R993Q 0.47 tolerated(0.42) benign(0.002) TCGA-DK-A1A3-01 2 168105892 168105892 A G XIRP2 Missense_Mutation p.R2664G 0.29 benign(0.009) TCGA-DK-A1A3-01 2 168106305 168106305 C T XIRP2 Silent p.P2801P 0.16 TCGA-DK-A1A3-01 2 169571567 169571572 ATATGT - CERS6 In_Frame_Del p.Y223_V224del 0.45 TCGA-DK-A1A3-01 2 175742603 175742603 C A CHN1 Missense_Mutation p.D172Y 0.19 deleterious(0.03) benign(0.033) TCGA-DK-A1A3-01 2 17699508 17699508 C T RAD51AP2 Missense_Mutation p.E59K 0.24 deleterious(0) probably_damaging(0.979) TCGA-DK-A1A3-01 2 17773477 17773477 G C VSNL1 Missense_Mutation p.E46Q 0.12 tolerated(0.18) benign(0.001) TCGA-DK-A1A3-01 2 179399128 179399128 A G TTN Missense_Mutation p.W34072R 0.35 TCGA-DK-A1A3-01 2 179401935 179401935 C T TTN Missense_Mutation p.E33301K 0.11 TCGA-DK-A1A3-01 2 179464127 179464127 G A TTN Missense_Mutation p.S18798L 0.27 TCGA-DK-A1A3-01 2 179604209 179604209 C G TTN Missense_Mutation p.G4584A 0.43 TCGA-DK-A1A3-01 2 190559783 190559783 G A ANKAR Missense_Mutation p.E462K 0.54 deleterious(0.01) possibly_damaging(0.787) TCGA-DK-A1A3-01 2 192700708 192700708 C G SDPR Missense_Mutation p.E407Q 0.26 deleterious_low_confidence(0.03) benign(0.264) TCGA-DK-A1A3-01 2 192700978 192700978 C G SDPR Missense_Mutation p.D317H 0.36 deleterious(0) possibly_damaging(0.626) TCGA-DK-A1A3-01 2 192701073 192701073 C - SDPR Frame_Shift_Del p.G285Efs*90 0.28 TCGA-DK-A1A3-01 2 192701111 192701111 C G SDPR Missense_Mutation p.K272N 0.34 deleterious(0) possibly_damaging(0.905) TCGA-DK-A1A3-01 2 197791211 197791211 C T PGAP1 Missense_Mutation p.E44K 0.55 deleterious(0.01) possibly_damaging(0.804) TCGA-DK-A1A3-01 2 198380840 198380840 G A MOB4 Silent p.L10L 0.40 TCGA-DK-A1A3-01 2 200790122 200790122 C G C2orf69 Missense_Mutation p.S224C 0.36 tolerated(0.1) benign(0.015) TCGA-DK-A1A3-01 2 204324748 204324748 C G RAPH1 Missense_Mutation p.R325T 0.33 probably_damaging(0.981) TCGA-DK-A1A3-01 2 20451400 20451400 C T PUM2 Silent p.L1047L 0.27 TCGA-DK-A1A3-01 2 208795688 208795688 G A PLEKHM3 Silent p.F616F 0.52 TCGA-DK-A1A3-01 2 219498429 219498429 C T PLCD4 Silent p.F517F 0.24 TCGA-DK-A1A3-01 2 219528996 219528996 G C RNF25 Missense_Mutation p.P355R 0.20 tolerated(0.6) benign(0.063) TCGA-DK-A1A3-01 2 230341868 230341868 G A DNER Nonsense_Mutation p.Q417* 0.57 TCGA-DK-A1A3-01 2 233899630 233899630 G A NEU2 Missense_Mutation p.D336N 0.57 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 2 238266512 238266512 T A COL6A3 Missense_Mutation p.Q2162L 0.58 benign(0.002) TCGA-DK-A1A3-01 2 240111708 240111708 C T HDAC4 Missense_Mutation p.D54N 0.59 deleterious(0.04) possibly_damaging(0.904) TCGA-DK-A1A3-01 2 242598539 242598539 G A ATG4B Missense_Mutation p.D159N 0.12 deleterious(0) possibly_damaging(0.782) TCGA-DK-A1A3-01 2 25799704 25799704 T C DTNB Intron 0.32 TCGA-DK-A1A3-01 2 26204414 26204414 C T KIF3C Missense_Mutation p.E125K 0.13 possibly_damaging(0.755) TCGA-DK-A1A3-01 2 27566319 27566319 C T GTF3C2 Missense_Mutation p.D35N 0.29 tolerated_low_confidence(0.26) benign(0.042) TCGA-DK-A1A3-01 2 27603057 27603058 CA - ZNF513 Frame_Shift_Del p.L38Sfs*9 0.23 TCGA-DK-A1A3-01 2 27609992 27609992 C T PPM1G Missense_Mutation p.E52K 0.38 tolerated(0.13) benign(0) TCGA-DK-A1A3-01 2 279969 279969 C G FAM150B 3'UTR 0.16 TCGA-DK-A1A3-01 2 31572632 31572632 G A XDH Silent p.F963F 0.20 TCGA-DK-A1A3-01 2 32289086 32289086 G C SPAST Silent p.A62A 0.27 TCGA-DK-A1A3-01 2 32419049 32419049 G A SLC30A6 Missense_Mutation p.E205K 0.12 tolerated(0.12) benign(0.059) TCGA-DK-A1A3-01 2 32740283 32740283 G A BIRC6 Missense_Mutation p.A3599T 0.10 probably_damaging(0.938) TCGA-DK-A1A3-01 2 33745672 33745672 C A RASGRP3 Missense_Mutation p.R97S 0.16 tolerated(0.15) possibly_damaging(0.588) TCGA-DK-A1A3-01 2 38893363 38893363 G A GALM Silent p.E20E 0.25 TCGA-DK-A1A3-01 2 39042771 39042771 G A DHX57 Silent p.F1166F 0.29 TCGA-DK-A1A3-01 2 43458299 43458299 G A THADA Nonsense_Mutation p.Q1884* 0.29 TCGA-DK-A1A3-01 2 43801742 43801742 G A THADA Nonsense_Mutation p.Q488* 0.27 TCGA-DK-A1A3-01 2 47249004 47249004 G A TTC7A Missense_Mutation p.E466K 0.26 tolerated(0.07) benign(0.02) TCGA-DK-A1A3-01 2 61710158 61710158 G C XPO1 Missense_Mutation p.Q916E 0.27 tolerated(0.09) benign(0.267) TCGA-DK-A1A3-01 2 64335432 64335432 C T PELI1 Missense_Mutation p.D5N 0.29 tolerated_low_confidence(0.28) benign(0.174) TCGA-DK-A1A3-01 2 71298938 71298938 C T NAGK Silent p.I158I 0.06 TCGA-DK-A1A3-01 2 74708006 74708006 G A CCDC142 Silent p.L458L 0.27 TCGA-DK-A1A3-01 2 80529640 80529640 G A LRRTM1 Silent p.L435L 0.29 TCGA-DK-A1A3-01 2 85097505 85097505 C T TRABD2A Missense_Mutation p.M171I 0.28 deleterious(0) possibly_damaging(0.641) TCGA-DK-A1A3-01 2 85777223 85777223 C T GGCX Missense_Mutation p.R704Q 0.22 tolerated(0.13) possibly_damaging(0.691) TCGA-DK-A1A3-01 2 85857963 85857963 G A USP39 Missense_Mutation p.M281I 0.29 tolerated(0.9) benign(0.027) TCGA-DK-A1A3-01 2 87017667 87017667 C T CD8A Missense_Mutation p.A63T 0.37 tolerated(0.21) benign(0.003) TCGA-DK-A1A3-01 2 95815496 95815496 G A ZNF514 Missense_Mutation p.S245L 0.31 tolerated(0.09) benign(0.143) TCGA-DK-A1A3-01 2 96992597 96992597 G A ITPRIPL1 Nonsense_Mutation p.W84* 0.29 TCGA-DK-A1A3-01 2 97217382 97217382 G C ARID5A Missense_Mutation p.G373R 0.26 tolerated(0.17) benign(0.132) TCGA-DK-A1A3-01 2 97365766 97365766 G A FER1L5 RNA 0.33 TCGA-DK-A1A3-01 2 98263594 98263594 G A COX5B Silent p.K56K 0.25 TCGA-DK-A1A3-01 3 100354655 100354655 A G GPR128 Silent p.R194R 0.44 TCGA-DK-A1A3-01 3 100964653 100964654 - A IMPG2 Frame_Shift_Ins p.E513Rfs*8 0.30 TCGA-DK-A1A3-01 3 101284754 101284754 C G TRMT10C Missense_Mutation p.P377A 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 3 107778373 107778373 T C CD47 Missense_Mutation p.N206S 0.11 tolerated(0.12) benign(0.068) TCGA-DK-A1A3-01 3 113321989 113321989 C T SIDT1 Missense_Mutation p.R419W 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 3 113393710 113393710 C T KIAA2018 Missense_Mutation p.E6K 0.12 probably_damaging(0.993) TCGA-DK-A1A3-01 3 121207358 121207358 C T POLQ Missense_Mutation p.E1474K 0.15 tolerated(0.05) benign(0.423) TCGA-DK-A1A3-01 3 121414092 121414092 C G GOLGB1 Missense_Mutation p.E1760Q 0.21 benign(0.312) TCGA-DK-A1A3-01 3 121414425 121414425 G A GOLGB1 Nonsense_Mutation p.Q1649* 0.37 TCGA-DK-A1A3-01 3 121416258 121416258 C A GOLGB1 Nonsense_Mutation p.E1038* 0.19 TCGA-DK-A1A3-01 3 121416388 121416388 C T GOLGB1 Silent p.E994E 0.24 TCGA-DK-A1A3-01 3 121416969 121416969 C T GOLGB1 Missense_Mutation p.E801K 0.30 probably_damaging(0.999) TCGA-DK-A1A3-01 3 121417118 121417118 C G GOLGB1 Missense_Mutation p.R751T 0.26 possibly_damaging(0.839) TCGA-DK-A1A3-01 3 122168479 122168479 C G KPNA1 Missense_Mutation p.D287H 0.14 deleterious(0.01) probably_damaging(0.937) TCGA-DK-A1A3-01 3 124165699 124165699 G A KALRN Silent p.L1171L 0.34 TCGA-DK-A1A3-01 3 125725202 125725202 A G SLC41A3 3'Flank 0.17 TCGA-DK-A1A3-01 3 127327705 127327705 G A MCM2 Missense_Mutation p.D423N 0.46 deleterious(0.02) possibly_damaging(0.452) TCGA-DK-A1A3-01 3 12783971 12783971 C T TMEM40 Missense_Mutation p.E113K 0.12 deleterious(0.01) possibly_damaging(0.641) TCGA-DK-A1A3-01 3 129288723 129288723 G A PLXND1 Silent p.I1276I 0.11 TCGA-DK-A1A3-01 3 132185190 132185190 G A DNAJC13 Silent p.E672E 0.10 TCGA-DK-A1A3-01 3 134967280 134967280 G A EPHB1 Silent p.E873E 0.30 TCGA-DK-A1A3-01 3 135913931 135913931 G A MSL2 Missense_Mutation p.L9F 0.32 deleterious(0) probably_damaging(0.955) TCGA-DK-A1A3-01 3 137880685 137880685 T C DBR1 3'UTR 0.29 TCGA-DK-A1A3-01 3 138187010 138187010 C T ESYT3 Missense_Mutation p.L428F 0.32 tolerated(0.13) benign(0.157) TCGA-DK-A1A3-01 3 141923436 141923436 C G GK5 Intron 0.17 TCGA-DK-A1A3-01 3 142184050 142184050 C G ATR Missense_Mutation p.K2310N 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 3 143691397 143691397 G A C3orf58 Missense_Mutation p.E75K 0.31 tolerated(0.51) benign(0.003) TCGA-DK-A1A3-01 3 145804623 145804623 C A PLOD2 Missense_Mutation p.V360L 0.23 tolerated(0.08) benign(0.072) TCGA-DK-A1A3-01 3 151046193 151046193 G C P2RY13 Missense_Mutation p.F217L 0.09 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A3-01 3 152058763 152058763 C G TMEM14E 5'UTR 0.12 TCGA-DK-A1A3-01 3 155571325 155571325 G A SLC33A1 Silent p.F154F 0.29 TCGA-DK-A1A3-01 3 155655488 155655488 T A GMPS 3'UTR 0.26 TCGA-DK-A1A3-01 3 159995413 159995413 G A IFT80 Nonsense_Mutation p.R628* 0.23 TCGA-DK-A1A3-01 3 160958933 160958933 G C NMD3 Missense_Mutation p.D285H 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-DK-A1A3-01 3 172028660 172028660 G C FNDC3B Missense_Mutation p.E415Q 0.03 tolerated(0.14) possibly_damaging(0.615) TCGA-DK-A1A3-01 3 183700753 183700753 C G ABCC5 Missense_Mutation p.E212Q 0.14 tolerated(0.17) benign(0.061) TCGA-DK-A1A3-01 3 184002817 184002817 G A ECE2 Missense_Mutation p.D476N 0.28 tolerated(0.21) possibly_damaging(0.889) TCGA-DK-A1A3-01 3 31703377 31703377 G A OSBPL10 3'UTR 0.17 TCGA-DK-A1A3-01 3 33400807 33400807 C G FBXL2 Missense_Mutation p.N51K 0.11 deleterious(0.01) probably_damaging(0.952) TCGA-DK-A1A3-01 3 37695244 37695257 GCAGACCTGCAGCT - ITGA9 Frame_Shift_Del p.A627Sfs*3 0.25 TCGA-DK-A1A3-01 3 39139937 39139937 C T GORASP1 Silent p.L371L 0.29 TCGA-DK-A1A3-01 3 42777313 42777313 C T CCDC13 Silent p.L419L 0.24 TCGA-DK-A1A3-01 3 45152268 45152268 G A CDCP1 Missense_Mutation p.P241S 0.35 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 3 46307616 46307616 C T CCR3 Missense_Mutation p.H344Y 0.33 tolerated(0.78) benign(0.003) TCGA-DK-A1A3-01 3 47044731 47044731 G A NBEAL2 Silent p.V1884V 0.10 TCGA-DK-A1A3-01 3 47164187 47164187 C T SETD2 Missense_Mutation p.D647N 0.13 tolerated_low_confidence(0.05) benign(0.357) TCGA-DK-A1A3-01 3 52538540 52538540 C A STAB1 Missense_Mutation p.S405Y 0.18 tolerated(1) benign(0.002) TCGA-DK-A1A3-01 3 53159984 53159984 G A RFT1 Silent p.V30V 0.06 TCGA-DK-A1A3-01 3 58109122 58109122 C T FLNB Silent p.L1143L 0.32 TCGA-DK-A1A3-01 3 62423858 62423858 T C CADPS Missense_Mutation p.Y1233C 0.29 deleterious(0) possibly_damaging(0.759) TCGA-DK-A1A3-01 3 73004392 73004392 G C GXYLT2 Missense_Mutation p.K248N 0.18 tolerated(0.51) probably_damaging(0.998) TCGA-DK-A1A3-01 3 73004393 73004393 A T GXYLT2 Missense_Mutation p.I249F 0.19 deleterious(0) possibly_damaging(0.878) TCGA-DK-A1A3-01 3 8809175 8809175 G A OXTR Silent p.L233L 0.22 TCGA-DK-A1A3-01 3 88205273 88205273 C G C3orf38 Missense_Mutation p.L160V 0.29 tolerated(0.27) possibly_damaging(0.547) TCGA-DK-A1A3-01 3 9792844 9792844 C T OGG1 Missense_Mutation p.S118F 0.40 deleterious(0) possibly_damaging(0.561) TCGA-DK-A1A3-01 3 98110249 98110249 C T OR5K3 Missense_Mutation p.S247L 0.33 deleterious(0.02) benign(0.151) TCGA-DK-A1A3-01 3 98251707 98251707 C T GPR15 Missense_Mutation p.S277L 0.13 tolerated(0.33) benign(0.006) TCGA-DK-A1A3-01 3 9974537 9974537 C T IL17RC Missense_Mutation p.S577L 0.46 tolerated(0.6) benign(0.001) TCGA-DK-A1A3-01 4 100803147 100803147 C T LAMTOR3 3'UTR 0.22 TCGA-DK-A1A3-01 4 102117268 102117268 G T PPP3CA Missense_Mutation p.P22T 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-DK-A1A3-01 4 107249297 107249297 G A AIMP1 Silent p.V120V 0.24 TCGA-DK-A1A3-01 4 111397820 111397820 G A ENPEP Missense_Mutation p.E84K 0.32 tolerated(0.28) benign(0.15) TCGA-DK-A1A3-01 4 115858492 115858492 G A NDST4 Silent p.F463F 0.22 TCGA-DK-A1A3-01 4 122853440 122853440 C T TRPC3 Missense_Mutation p.E325K 0.24 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 4 140275244 140275244 A G NAA15 Missense_Mutation p.N360S 0.15 tolerated(1) benign(0.016) TCGA-DK-A1A3-01 4 149073701 149073701 G A NR3C2 Missense_Mutation p.S810L 0.19 tolerated(0.13) possibly_damaging(0.836) TCGA-DK-A1A3-01 4 155507934 155507934 C T FGA Missense_Mutation p.R216K 0.20 tolerated(0.74) benign(0.018) TCGA-DK-A1A3-01 4 174254236 174254236 C A HMGB2 Missense_Mutation p.A94S 0.16 deleterious(0) benign(0.433) TCGA-DK-A1A3-01 4 186429463 186429463 G A PDLIM3 Missense_Mutation p.P218S 0.21 tolerated(0.15) benign(0.001) TCGA-DK-A1A3-01 4 1918678 1918678 C A WHSC1 Missense_Mutation p.L281I 0.21 tolerated(0.79) benign(0.158) TCGA-DK-A1A3-01 4 2238119 2238119 C G HAUS3 Missense_Mutation p.E472Q 0.11 deleterious(0.04) possibly_damaging(0.461) TCGA-DK-A1A3-01 4 36212232 36212232 G A ARAP2 Nonsense_Mutation p.Q423* 0.21 TCGA-DK-A1A3-01 4 39506886 39506886 G A UGDH Missense_Mutation p.S381F 0.14 deleterious(0.01) possibly_damaging(0.8) TCGA-DK-A1A3-01 4 40763266 40763266 G C NSUN7 Missense_Mutation p.D146H 0.18 tolerated(0.06) benign(0.024) TCGA-DK-A1A3-01 4 68829130 68829130 G A TMPRSS11A 5'UTR 0.34 TCGA-DK-A1A3-01 4 68934364 68934364 G A TMPRSS11F Silent p.L243L 0.11 TCGA-DK-A1A3-01 4 7044095 7044095 G A CCDC96 Missense_Mutation p.P191S 0.19 tolerated_low_confidence(0.19) benign(0.011) TCGA-DK-A1A3-01 4 76579204 76579204 G A G3BP2 Missense_Mutation p.S263F 0.31 tolerated(0.11) possibly_damaging(0.687) TCGA-DK-A1A3-01 4 79199890 79199890 G A FRAS1 Missense_Mutation p.G355R 0.28 benign(0.001) TCGA-DK-A1A3-01 4 79238534 79238534 C G FRAS1 Nonsense_Mutation p.S611* 0.16 TCGA-DK-A1A3-01 4 8602948 8602948 G A CPZ Missense_Mutation p.E74K 0.24 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A3-01 4 861130 861130 G A GAK Missense_Mutation p.S829L 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 4 87691109 87691109 A G PTPN13 Silent p.G1564G 0.12 TCGA-DK-A1A3-01 4 88535250 88535250 C T DSPP Missense_Mutation p.S479L 0.23 probably_damaging(0.998) TCGA-DK-A1A3-01 5 102442447 102442447 T C GIN1 Silent p.T102T 0.30 TCGA-DK-A1A3-01 5 125968328 125968328 C T C5orf48 Silent p.F59F 0.22 TCGA-DK-A1A3-01 5 131895051 131895051 G A RAD50 Missense_Mutation p.D69N 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 5 131915089 131915102 CTGTGCTAAATAAT - RAD50 Frame_Shift_Del p.A149Gfs*10 0.21 TCGA-DK-A1A3-01 5 132216699 132216699 G A AFF4 3'UTR 0.21 TCGA-DK-A1A3-01 5 134332199 134332199 C T CATSPER3 Silent p.I163I 0.20 TCGA-DK-A1A3-01 5 134705752 134705752 C T H2AFY Missense_Mutation p.V85M 0.08 deleterious(0.04) benign(0.158) TCGA-DK-A1A3-01 5 137219160 137219160 G C MYOT Missense_Mutation p.E302Q 0.22 deleterious(0.01) probably_damaging(1) TCGA-DK-A1A3-01 5 137763715 137763715 G C KDM3B Missense_Mutation p.D1565H 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 5 13841027 13841027 G C DNAH5 Missense_Mutation p.I1899M 0.16 benign(0.308) TCGA-DK-A1A3-01 5 140559208 140559208 G C PCDHB8 Silent p.R531R 0.10 TCGA-DK-A1A3-01 5 140563854 140563854 G A PCDHB16 Missense_Mutation p.E574K 0.18 deleterious_low_confidence(0) benign(0.317) TCGA-DK-A1A3-01 5 140573268 140573268 G A PCDHB10 Missense_Mutation p.M381I 0.23 tolerated_low_confidence(0.19) benign(0.003) TCGA-DK-A1A3-01 5 140870243 140870243 C T PCDHGC5 Missense_Mutation p.S479L 0.21 tolerated(0.23) benign(0.024) TCGA-DK-A1A3-01 5 14389431 14389431 G A TRIO Missense_Mutation p.E1328K 0.29 probably_damaging(0.989) TCGA-DK-A1A3-01 5 147807414 147807414 G A FBXO38 Intron 0.14 TCGA-DK-A1A3-01 5 149449619 149449619 C T CSF1R Missense_Mutation p.E443K 0.18 tolerated(0.2) benign(0.02) TCGA-DK-A1A3-01 5 153407773 153407773 G A FAM114A2 Missense_Mutation p.A189V 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 5 156932736 156932736 A G ADAM19 Silent p.S357S 0.23 TCGA-DK-A1A3-01 5 157078609 157078609 G A SOX30 Missense_Mutation p.P160S 0.15 tolerated_low_confidence(0.13) benign(0.298) TCGA-DK-A1A3-01 5 157218935 157218935 C T CLINT1 Missense_Mutation p.V386I 0.15 tolerated(0.26) benign(0.001) TCGA-DK-A1A3-01 5 15928098 15928098 C T FBXL7 Missense_Mutation p.S76F 0.27 tolerated(0.06) probably_damaging(0.962) TCGA-DK-A1A3-01 5 160761889 160761889 G T GABRB2 Silent p.L234L 0.23 TCGA-DK-A1A3-01 5 16781865 16781865 G C MYO10 Missense_Mutation p.Q226E 0.13 deleterious(0.04) probably_damaging(0.981) TCGA-DK-A1A3-01 5 167993164 167993164 A G PANK3 Silent p.F163F 0.15 TCGA-DK-A1A3-01 5 176005373 176005373 C T CDHR2 Missense_Mutation p.L528F 0.33 deleterious(0.01) possibly_damaging(0.616) TCGA-DK-A1A3-01 5 179229052 179229052 G A MGAT4B Silent p.P20P 0.19 TCGA-DK-A1A3-01 5 23527346 23527346 G A PRDM9 Missense_Mutation p.E717K 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A1A3-01 5 32233926 32233926 C A MTMR12 Nonsense_Mutation p.E543* 0.30 TCGA-DK-A1A3-01 5 33891861 33891861 G A ADAMTS12 Missense_Mutation p.P34L 0.24 tolerated(0.59) benign(0.003) TCGA-DK-A1A3-01 5 34867123 34867123 G A TTC23L Silent p.Q263Q 0.22 TCGA-DK-A1A3-01 5 36265572 36265572 C T RANBP3L Missense_Mutation p.D132N 0.23 deleterious(0.03) possibly_damaging(0.881) TCGA-DK-A1A3-01 5 40730373 40730373 C T TTC33 Missense_Mutation p.M98I 0.28 tolerated(0.06) benign(0.02) TCGA-DK-A1A3-01 5 40909646 40909646 G A C7 5'UTR 0.34 TCGA-DK-A1A3-01 5 45462008 45462008 G A HCN1 Silent p.F317F 0.19 TCGA-DK-A1A3-01 5 77406125 77406125 G C AP3B1 Nonsense_Mutation p.S768* 0.17 TCGA-DK-A1A3-01 5 79284998 79284998 C T MTX3 Missense_Mutation p.E39K 0.39 tolerated(0.09) probably_damaging(0.972) TCGA-DK-A1A3-01 5 90052949 90052949 C T GPR98 Missense_Mutation p.H3971Y 0.30 possibly_damaging(0.53) TCGA-DK-A1A3-01 5 94728542 94728542 G A FAM81B Missense_Mutation p.E57K 0.43 tolerated_low_confidence(0.06) benign(0.167) TCGA-DK-A1A3-01 6 100841697 100841697 G A SIM1 Silent p.T412T 0.46 TCGA-DK-A1A3-01 6 10913109 10913109 T C SYCP2L Missense_Mutation p.W341R 0.33 deleterious(0) probably_damaging(0.929) TCGA-DK-A1A3-01 6 111913025 111913025 C T TRAF3IP2 Missense_Mutation p.E89K 0.40 deleterious(0.02) possibly_damaging(0.611) TCGA-DK-A1A3-01 6 127797109 127797109 C T SOGA3 Missense_Mutation p.D688N 0.34 tolerated(0.07) possibly_damaging(0.65) TCGA-DK-A1A3-01 6 132910852 132910852 G A TAAR5 5'UTR 0.44 TCGA-DK-A1A3-01 6 135521495 135521495 G A MYB Missense_Mutation p.G631E 0.46 tolerated(0.33) benign(0.015) TCGA-DK-A1A3-01 6 136502427 136502427 G C PDE7B Missense_Mutation p.W337C 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 6 142691518 142691518 G C GPR126 Missense_Mutation p.K219N 0.25 tolerated(0.45) benign(0.003) TCGA-DK-A1A3-01 6 149856762 149856762 T C PPIL4 Missense_Mutation p.D145G 0.32 deleterious(0) benign(0.1) TCGA-DK-A1A3-01 6 157502230 157502230 C T ARID1B Missense_Mutation p.S1088L 0.47 benign(0.281) TCGA-DK-A1A3-01 6 158499228 158499228 G C SYNJ2 Missense_Mutation p.D828H 0.17 tolerated(0.08) possibly_damaging(0.653) TCGA-DK-A1A3-01 6 169648940 169648940 C T THBS2 Missense_Mutation p.D61N 0.42 tolerated(0.14) probably_damaging(0.999) TCGA-DK-A1A3-01 6 18122174 18122174 C G NHLRC1 Missense_Mutation p.E222Q 0.35 tolerated(0.12) benign(0.005) TCGA-DK-A1A3-01 6 18122786 18122786 C A NHLRC1 Nonsense_Mutation p.E18* 0.18 TCGA-DK-A1A3-01 6 26446154 26446154 C T BTN3A3 Missense_Mutation p.S219F 0.39 deleterious(0.03) probably_damaging(0.987) TCGA-DK-A1A3-01 6 26459743 26459743 C T BTN2A1 Silent p.I39I 0.16 TCGA-DK-A1A3-01 6 26501556 26501556 C T BTN1A1 Silent p.L14L 0.24 TCGA-DK-A1A3-01 6 27107327 27107327 G A HIST1H4I Silent p.K80K 0.15 TCGA-DK-A1A3-01 6 27833492 27833492 G A HIST1H2AL Silent p.K120K 0.18 TCGA-DK-A1A3-01 6 28056944 28056944 C T ZNF165 Missense_Mutation p.S385L 0.23 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A3-01 6 30126201 30126201 T C TRIM10 Missense_Mutation p.E244G 0.15 tolerated(0.07) benign(0.002) TCGA-DK-A1A3-01 6 30681764 30681764 C T MDC1 Silent p.V111V 0.19 TCGA-DK-A1A3-01 6 31635725 31635725 C G CSNK2B-LY6G5B-1181 Missense_Mutation p.D51E 0.23 tolerated(0.18) possibly_damaging(0.8) TCGA-DK-A1A3-01 6 32134565 32134565 C T EGFL8 Silent p.H104H 0.24 TCGA-DK-A1A3-01 6 32159071 32159071 G C GPSM3 3'UTR 0.16 TCGA-DK-A1A3-01 6 33244172 33244172 C T RPS18 Missense_Mutation p.R130C 0.12 deleterious(0.05) possibly_damaging(0.85) TCGA-DK-A1A3-01 6 33256950 33256950 C T WDR46 5'UTR 0.36 TCGA-DK-A1A3-01 6 33283235 33283235 G A ZBTB22 Silent p.L487L 0.21 TCGA-DK-A1A3-01 6 33284430 33284430 G C ZBTB22 Silent p.L88L 0.13 TCGA-DK-A1A3-01 6 33287200 33287200 G A DAXX Missense_Mutation p.R633W 0.17 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A3-01 6 33385311 33385311 G A CUTA Silent p.V87V 0.29 TCGA-DK-A1A3-01 6 35213121 35213121 C T SCUBE3 Missense_Mutation p.R840C 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 6 40400146 40400146 G A LRFN2 Missense_Mutation p.S236F 0.27 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A1A3-01 6 44227792 44227792 G T NFKBIE Missense_Mutation p.D475E 0.18 tolerated(0.13) possibly_damaging(0.835) TCGA-DK-A1A3-01 6 46658620 46658620 G T TDRD6 Nonsense_Mutation p.E919* 0.12 TCGA-DK-A1A3-01 6 46794205 46794205 G A MEP1A Missense_Mutation p.G298E 0.37 deleterious(0.04) benign(0.182) TCGA-DK-A1A3-01 6 51908451 51908451 G A PKHD1 Silent p.P931P 0.50 TCGA-DK-A1A3-01 6 7373335 7373335 C G CAGE1 Missense_Mutation p.E573Q 0.10 deleterious(0.02) possibly_damaging(0.556) TCGA-DK-A1A3-01 6 7580702 7580702 G A DSP Missense_Mutation p.E1427K 0.16 probably_damaging(0.987) TCGA-DK-A1A3-01 6 7581076 7581076 G A DSP Silent p.V1551V 0.37 TCGA-DK-A1A3-01 6 8064557 8064557 C T BLOC1S5 Missense_Mutation p.G18D 0.29 tolerated(0.12) benign(0.283) TCGA-DK-A1A3-01 6 90604653 90604653 A G GJA10 Missense_Mutation p.T156A 0.41 deleterious(0) probably_damaging(0.983) TCGA-DK-A1A3-01 6 94068097 94068097 G A EPHA7 Nonsense_Mutation p.Q289* 0.31 TCGA-DK-A1A3-01 6 97051647 97051647 A T FHL5 Missense_Mutation p.K53M 0.38 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 7 107342406 107342406 C G SLC26A4 Silent p.V646V 0.15 TCGA-DK-A1A3-01 7 110764893 110764893 G C LRRN3 Missense_Mutation p.E689Q 0.11 deleterious(0.03) benign(0.355) TCGA-DK-A1A3-01 7 111634279 111634279 C G DOCK4 Missense_Mutation p.E76Q 0.20 deleterious(0.01) benign(0.215) TCGA-DK-A1A3-01 7 112579712 112579712 C T C7orf60 Missense_Mutation p.E32K 0.18 deleterious(0.02) benign(0.099) TCGA-DK-A1A3-01 7 117400556 117400556 C T CTTNBP2 Silent p.V1035V 0.14 TCGA-DK-A1A3-01 7 120614801 120614801 A C ING3 Missense_Mutation p.H387P 0.10 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A3-01 7 121701184 121701184 G T PTPRZ1 Missense_Mutation p.R2286S 0.44 deleterious(0.01) benign(0.138) TCGA-DK-A1A3-01 7 123197496 123197496 C T NDUFA5 Missense_Mutation p.G10S 0.21 deleterious(0) probably_damaging(0.931) TCGA-DK-A1A3-01 7 127344995 127344995 G C SND1 Missense_Mutation p.E315Q 0.10 deleterious(0.04) probably_damaging(0.913) TCGA-DK-A1A3-01 7 129691140 129691140 G A ZC3HC1 Missense_Mutation p.R23C 0.13 deleterious(0) probably_damaging(0.939) TCGA-DK-A1A3-01 7 137075986 137075986 C A DGKI Missense_Mutation p.D1060Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A3-01 7 143095738 143095738 G A EPHA1 Missense_Mutation p.S431F 0.14 deleterious(0.05) benign(0.014) TCGA-DK-A1A3-01 7 148427336 148427336 G A CUL1 Missense_Mutation p.R41K 0.13 tolerated(0.4) possibly_damaging(0.609) TCGA-DK-A1A3-01 7 150164398 150164398 C T GIMAP8 Silent p.F204F 0.17 TCGA-DK-A1A3-01 7 16714045 16714045 G C BZW2 Missense_Mutation p.E23Q 0.13 deleterious(0.02) benign(0.127) TCGA-DK-A1A3-01 7 23731113 23731113 G A FAM221A Missense_Mutation p.E179K 0.29 deleterious(0.01) benign(0.014) TCGA-DK-A1A3-01 7 2565141 2565141 C T LFNG Silent p.V225V 0.32 TCGA-DK-A1A3-01 7 27797748 27797748 C T TAX1BP1 Silent p.F87F 0.15 TCGA-DK-A1A3-01 7 29234571 29234571 G A CHN2 Missense_Mutation p.S5N 0.29 tolerated_low_confidence(0.3) possibly_damaging(0.827) TCGA-DK-A1A3-01 7 34125385 34125385 G C BMPER Missense_Mutation p.D476H 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 7 38305062 38305062 G C TRGC1 Missense_Mutation p.S73R 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A3-01 7 44579102 44579102 G A NPC1L1 Silent p.V298V 0.17 TCGA-DK-A1A3-01 7 47467943 47467943 G A TNS3 Missense_Mutation p.S119L 0.21 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A3-01 7 48046822 48046822 C T SUN3 Missense_Mutation p.M144I 0.22 tolerated(0.53) benign(0.001) TCGA-DK-A1A3-01 7 56007179 56007179 C T ZNF713 Missense_Mutation p.S258L 0.28 tolerated(0.68) benign(0.004) TCGA-DK-A1A3-01 7 6027006 6027006 C T PMS2 Missense_Mutation p.D464N 0.28 tolerated(0.35) benign(0.048) TCGA-DK-A1A3-01 7 64467074 64467074 C T ERV3-1 5'Flank 0.20 TCGA-DK-A1A3-01 7 73246019 73246019 C T CLDN4 Missense_Mutation p.S163L 0.18 deleterious(0.03) possibly_damaging(0.813) TCGA-DK-A1A3-01 7 77584213 77584213 G A PHTF2 3'UTR 0.22 TCGA-DK-A1A3-01 7 8475305 8475305 C G NXPH1 5'UTR 0.14 TCGA-DK-A1A3-01 7 98460916 98460916 C T TMEM130 Missense_Mutation p.A65T 0.30 tolerated(0.89) benign(0.002) TCGA-DK-A1A3-01 8 102504934 102504934 G A GRHL2 5'UTR 0.39 TCGA-DK-A1A3-01 8 109797208 109797208 G C TMEM74 Silent p.L40L 0.12 TCGA-DK-A1A3-01 8 124693585 124693585 C T ANXA13 Silent p.G323G 0.52 TCGA-DK-A1A3-01 8 12947971 12947971 C T DLC1 Silent p.E1288E 0.19 TCGA-DK-A1A3-01 8 139629181 139629181 G A COL22A1 Silent p.G1282G 0.61 TCGA-DK-A1A3-01 8 145622704 145622704 C T CPSF1 Missense_Mutation p.E795K 0.52 deleterious(0) probably_damaging(0.971) TCGA-DK-A1A3-01 8 146068042 146068042 G A ZNF7 Missense_Mutation p.R517K 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-DK-A1A3-01 8 146279413 146279413 C G C8orf33 Nonsense_Mutation p.S187* 0.52 TCGA-DK-A1A3-01 8 1728467 1728467 C T CLN8 Missense_Mutation p.H199Y 0.13 deleterious(0) probably_damaging(0.983) TCGA-DK-A1A3-01 8 18729854 18729854 C T PSD3 Missense_Mutation p.D174N 0.20 tolerated_low_confidence(0.23) benign(0.003) TCGA-DK-A1A3-01 8 1876813 1876813 G A ARHGEF10 Missense_Mutation p.G973E 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 8 19316071 19316071 G T CSGALNACT1 Silent p.L239L 0.23 TCGA-DK-A1A3-01 8 21955290 21955290 C A FAM160B2 Missense_Mutation p.F155L 0.19 tolerated(0.08) benign(0.047) TCGA-DK-A1A3-01 8 21997685 21997685 C T REEP4 Nonsense_Mutation p.W61* 0.19 TCGA-DK-A1A3-01 8 22548114 22548114 C G EGR3 Missense_Mutation p.D346H 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 8 26906419 26906419 G A MIR548H4 RNA 0.25 TCGA-DK-A1A3-01 8 28206160 28206160 G A ZNF395 3'UTR 0.42 TCGA-DK-A1A3-01 8 30472223 30472223 G A GTF2E2 Nonsense_Mutation p.Q90* 0.21 TCGA-DK-A1A3-01 8 38090714 38090714 G A DDHD2 Missense_Mutation p.E68K 0.19 deleterious(0.01) probably_damaging(1) TCGA-DK-A1A3-01 8 48888324 48888324 G C MCM4 Missense_Mutation p.L805F 0.17 deleterious(0) probably_damaging(0.951) TCGA-DK-A1A3-01 8 61748694 61748694 C T CHD7 Nonsense_Mutation p.Q1281* 0.48 TCGA-DK-A1A3-01 8 77618332 77618332 C T ZFHX4 Missense_Mutation p.P670L 0.11 possibly_damaging(0.859) TCGA-DK-A1A3-01 8 89179976 89179976 A G MMP16 Missense_Mutation p.F211L 0.16 deleterious(0) probably_damaging(0.997) TCGA-DK-A1A3-01 8 90955531 90955531 G A NBN Missense_Mutation p.H712Y 0.56 deleterious(0) possibly_damaging(0.864) TCGA-DK-A1A3-01 8 95653664 95653664 C T ESRP1 Silent p.L40L 0.55 TCGA-DK-A1A3-01 9 115598511 115598511 G A SNX30 Silent p.K212K 0.11 TCGA-DK-A1A3-01 9 115805331 115805331 C G ZFP37 Missense_Mutation p.G523R 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A1A3-01 9 117027210 117027210 C G COL27A1 Missense_Mutation p.P1086A 0.46 possibly_damaging(0.822) TCGA-DK-A1A3-01 9 129157918 129157918 C T MVB12B Nonsense_Mutation p.Q202* 0.16 TCGA-DK-A1A3-01 9 129958857 129958857 G A RALGPS1 Missense_Mutation p.R381Q 0.55 tolerated(0.32) benign(0.034) TCGA-DK-A1A3-01 9 131864290 131864290 G A CRAT Missense_Mutation p.A226V 0.10 tolerated(1) benign(0.002) TCGA-DK-A1A3-01 9 133760298 133760298 G A ABL1 Missense_Mutation p.R893K 0.30 tolerated_low_confidence(0.06) benign(0.005) TCGA-DK-A1A3-01 9 134454822 134454822 C T RAPGEF1 3'UTR 0.18 TCGA-DK-A1A3-01 9 134454824 134454824 C T RAPGEF1 3'UTR 0.17 TCGA-DK-A1A3-01 9 134454870 134454870 C T RAPGEF1 3'UTR 0.20 TCGA-DK-A1A3-01 9 134454941 134454941 C G RAPGEF1 Silent p.L1077L 0.18 TCGA-DK-A1A3-01 9 134952861 134952861 G C MED27 Missense_Mutation p.Q106E 0.17 tolerated(0.2) possibly_damaging(0.6) TCGA-DK-A1A3-01 9 135781419 135781419 G A TSC1 Nonsense_Mutation p.Q516* 0.51 TCGA-DK-A1A3-01 9 137777709 137777709 G A FCN2 Silent p.L175L 0.51 TCGA-DK-A1A3-01 9 137804336 137804336 G C FCN1 Silent p.A198A 0.25 TCGA-DK-A1A3-01 9 422091 422091 G A DOCK8 Silent p.K1399K 0.43 TCGA-DK-A1A3-01 9 429848 429848 C T DOCK8 Silent p.A1540A 0.39 TCGA-DK-A1A3-01 9 79002362 79002362 C T RFK Missense_Mutation p.D141N 0.39 tolerated(0.1) benign(0.005) TCGA-DK-A1A3-01 9 84530861 84530861 C G SPATA31D5P RNA 0.17 TCGA-DK-A1A3-01 9 97082700 97082700 G C NUTM2F Silent p.V386V 0.42 TCGA-DK-A1A3-01 X 100608277 100608277 C T BTK Missense_Mutation p.E605K 0.54 deleterious(0.01) probably_damaging(0.949) TCGA-DK-A1A3-01 X 110395674 110395674 C T PAK3 Missense_Mutation p.S192L 0.22 tolerated(0.44) benign(0.001) TCGA-DK-A1A3-01 X 11272742 11272742 G A ARHGAP6 Missense_Mutation p.A225V 0.47 tolerated(0.41) benign(0.033) TCGA-DK-A1A3-01 X 142596594 142596594 C T SPANXN3 3'UTR 0.24 TCGA-DK-A1A3-01 X 1428539 1428539 G A CSF2RA 3'UTR 0.16 TCGA-DK-A1A3-01 X 1475113 1475113 G A IL3RA Splice_Site p.X206_splice 0.23 TCGA-DK-A1A3-01 X 153524334 153524334 C T TKTL1 Missense_Mutation p.S41F 0.22 deleterious(0.02) possibly_damaging(0.482) TCGA-DK-A1A3-01 X 153697282 153697282 C T PLXNA3 Silent p.L1468L 0.62 TCGA-DK-A1A3-01 X 27840056 27840056 C T MAGEB10 Silent p.I211I 0.27 TCGA-DK-A1A3-01 X 3239350 3239350 G A MXRA5 Missense_Mutation p.T1459I 0.55 tolerated(0.38) benign(0.002) TCGA-DK-A1A3-01 X 44894229 44894232 AAGT - KDM6A Splice_Site p.X207_splice 0.63 TCGA-DK-A1A3-01 X 54569458 54569458 A G GNL3L Missense_Mutation p.K126R 0.62 tolerated(0.85) benign(0.006) TCGA-DK-A1A3-01 X 591496 591496 T C SHOX 5'UTR 0.33 TCGA-DK-A1A3-01 X 64753613 64753613 G A LAS1L Missense_Mutation p.S80L 0.58 tolerated(1) benign(0.002) TCGA-DK-A1A3-01 X 96136711 96136711 C T DIAPH2 Missense_Mutation p.P194L 0.59 deleterious(0) unknown(0) TCGA-DK-A1A3-01 Y 14832567 14832567 C A USP9Y Missense_Mutation p.P48T 0.46 tolerated(0.1) possibly_damaging(0.573) TCGA-DK-A1A3-01 Y 9306007 9306007 G A TSPY1 Silent p.L221L 0.12 TCGA-DK-A1A5-01 10 1405328 1405328 C G ADARB2 Missense_Mutation p.K324N 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 10 24833013 24833013 A C KIAA1217 Missense_Mutation p.Y1605S 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 10 25886754 25886754 G T GPR158 Missense_Mutation p.M733I 0.28 deleterious(0) probably_damaging(0.937) TCGA-DK-A1A5-01 10 32635714 32635714 C T EPC1 Missense_Mutation p.G44R 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 10 46250443 46250443 G C FAM21C Missense_Mutation p.E434Q 0.24 tolerated(0.37) benign(0.294) TCGA-DK-A1A5-01 10 55755336 55755336 G A PCDH15 Intron 0.52 TCGA-DK-A1A5-01 10 61830487 61830487 C G ANK3 Missense_Mutation p.Q3384H 0.24 probably_damaging(0.969) TCGA-DK-A1A5-01 10 97919969 97919969 G C ZNF518A RNA 0.30 TCGA-DK-A1A5-01 11 101375138 101375138 C G TRPC6 Missense_Mutation p.E188Q 0.56 tolerated(0.66) probably_damaging(0.998) TCGA-DK-A1A5-01 11 11373695 11373695 G C CSNK2A3 Missense_Mutation p.F324L 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1A5-01 11 1155713 1155713 G C MUC5AC Missense_Mutation p.S134T 0.48 tolerated(0.69) benign(0.024) TCGA-DK-A1A5-01 11 119548477 119548477 G A PVRL1 Missense_Mutation p.S174L 0.56 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A5-01 11 128839644 128839644 C T ARHGAP32 Missense_Mutation p.E1808K 0.66 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A5-01 11 32624470 32624470 G C CCDC73 Missense_Mutation p.L1043V 0.57 deleterious(0.05) possibly_damaging(0.453) TCGA-DK-A1A5-01 11 47806511 47806511 C G NUP160 Missense_Mutation p.G1318A 0.57 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A1A5-01 11 48511051 48511051 C G OR4A47 Nonsense_Mutation p.S236* 0.34 TCGA-DK-A1A5-01 11 49176030 49176030 G A FOLH1 Silent p.F546F 0.12 TCGA-DK-A1A5-01 11 55433450 55433450 G T OR4C6 Missense_Mutation p.A270S 0.62 tolerated_low_confidence(0.07) benign(0.137) TCGA-DK-A1A5-01 11 57193532 57193532 C T SLC43A3 Silent p.K38K 0.50 TCGA-DK-A1A5-01 11 59224919 59224919 G A OR4D6 Silent p.L162L 0.35 TCGA-DK-A1A5-01 11 63129871 63129871 C A SLC22A10 3'UTR 0.89 TCGA-DK-A1A5-01 11 64708119 64708119 C G C11orf85 Splice_Site p.X158_splice 0.52 TCGA-DK-A1A5-01 11 67926623 67926623 G T SUV420H1 Missense_Mutation p.S397Y 0.29 deleterious(0) benign(0.372) TCGA-DK-A1A5-01 11 70220944 70220944 C G PPFIA1 Intron 0.92 TCGA-DK-A1A5-01 11 89424064 89424064 C T FOLH1B RNA 0.09 TCGA-DK-A1A5-01 11 94533316 94533316 G A AMOTL1 Missense_Mutation p.M320I 0.30 tolerated(0.37) benign(0.001) TCGA-DK-A1A5-01 12 102591222 102591222 C G PARPBP 3'Flank 0.21 TCGA-DK-A1A5-01 12 108011968 108011968 G A BTBD11 Silent p.E755E 0.12 TCGA-DK-A1A5-01 12 109971290 109971290 G A UBE3B Missense_Mutation p.R981K 0.29 tolerated(1) benign(0.08) TCGA-DK-A1A5-01 12 11139103 11139106 AAGA - TAS2R50 Frame_Shift_Del p.L119Ifs*2 0.35 TCGA-DK-A1A5-01 12 119617098 119617098 C T HSPB8 5'UTR 0.37 TCGA-DK-A1A5-01 12 120263155 120263155 C T CIT Silent p.P257P 0.37 TCGA-DK-A1A5-01 12 1213916 1213916 G A ERC1 Missense_Mutation p.E363K 0.20 deleterious(0) probably_damaging(0.992) TCGA-DK-A1A5-01 12 123351840 123351840 C T VPS37B Missense_Mutation p.M227I 0.36 tolerated(0.39) benign(0.006) TCGA-DK-A1A5-01 12 125509985 125509985 C T BRI3BP 3'UTR 0.30 TCGA-DK-A1A5-01 12 130184379 130184379 G C TMEM132D Missense_Mutation p.S315C 0.23 tolerated(0.07) benign(0.105) TCGA-DK-A1A5-01 12 13103173 13103173 C T GPRC5D Missense_Mutation p.R49Q 0.50 tolerated(0.34) benign(0.099) TCGA-DK-A1A5-01 12 1675835 1675835 C T FBXL14 3'UTR 0.17 TCGA-DK-A1A5-01 12 26875357 26875357 G A ITPR2 Silent p.F166F 0.29 TCGA-DK-A1A5-01 12 2975580 2975580 C G FOXM1 Missense_Mutation p.L318F 0.25 deleterious(0) probably_damaging(0.924) TCGA-DK-A1A5-01 12 39711890 39711890 G A KIF21A Missense_Mutation p.S1298L 0.14 tolerated(0.27) benign(0.027) TCGA-DK-A1A5-01 12 52940119 52940119 C G KRT71 Missense_Mutation p.D426H 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 12 53457754 53457754 G C TENC1 3'UTR 0.37 TCGA-DK-A1A5-01 12 55688666 55688666 G A OR6C6 Silent p.S117S 0.35 TCGA-DK-A1A5-01 12 56188642 56188642 C T SARNP Missense_Mutation p.R109Q 0.35 tolerated(0.08) benign(0) TCGA-DK-A1A5-01 12 57009177 57009178 - C BAZ2A Frame_Shift_Ins p.Q120Tfs*20 0.37 TCGA-DK-A1A5-01 12 66642122 66642122 C G IRAK3 3'UTR 0.25 TCGA-DK-A1A5-01 12 71833917 71833917 G A LGR5 Silent p.A19A 0.33 TCGA-DK-A1A5-01 12 7556186 7556186 A G CD163L1 Silent p.D451D 0.14 TCGA-DK-A1A5-01 12 7945759 7945759 T A NANOG Missense_Mutation p.L122H 0.52 tolerated(0.07) benign(0.275) TCGA-DK-A1A5-01 12 9083028 9083028 C T PHC1 Intron 0.16 TCGA-DK-A1A5-01 13 110829360 110829360 G A COL4A1 Missense_Mutation p.S914L 0.23 benign(0.172) TCGA-DK-A1A5-01 13 20357001 20357001 G C PSPC1 5'UTR 0.40 TCGA-DK-A1A5-01 13 28589746 28589746 C T FLT3 Silent p.L878L 0.12 TCGA-DK-A1A5-01 13 32914733 32914733 G C BRCA2 Missense_Mutation p.E2081Q 0.43 deleterious(0.03) possibly_damaging(0.607) TCGA-DK-A1A5-01 13 41379289 41379289 C A SLC25A15 Missense_Mutation p.S117Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-DK-A1A5-01 13 73590051 73590051 G C PIBF1 Missense_Mutation p.K756N 0.19 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-DK-A1A5-01 14 104570652 104570652 C G ASPG Missense_Mutation p.F255L 0.25 deleterious(0.02) possibly_damaging(0.559) TCGA-DK-A1A5-01 14 21762864 21762864 G C RPGRIP1 Missense_Mutation p.L38F 0.42 tolerated(0.05) benign(0.06) TCGA-DK-A1A5-01 14 31614067 31614067 G C HECTD1 Silent p.L859L 0.51 TCGA-DK-A1A5-01 14 38311413 38311413 C T TTC6 Missense_Mutation p.R1860C 0.39 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A5-01 14 52535556 52535556 C G NID2 Missense_Mutation p.D53H 0.53 deleterious(0) probably_damaging(0.979) TCGA-DK-A1A5-01 14 58949408 58949408 C G KIAA0586 Nonsense_Mutation p.S1094* 0.31 TCGA-DK-A1A5-01 14 61190738 61190738 C G SIX4 Missense_Mutation p.E19Q 0.40 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DK-A1A5-01 14 63269243 63269243 C G KCNH5 Silent p.R542R 0.25 TCGA-DK-A1A5-01 14 64586261 64586261 G A SYNE2 Silent p.L4319L 0.58 TCGA-DK-A1A5-01 14 68043123 68043123 C G PLEKHH1 Silent p.L788L 0.28 TCGA-DK-A1A5-01 14 79270112 79270112 G T NRXN3 Missense_Mutation p.D359Y 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 14 94405833 94405833 G A ASB2 Missense_Mutation p.S413F 0.21 deleterious(0.01) benign(0.03) TCGA-DK-A1A5-01 15 22864348 22864348 G A TUBGCP5 Missense_Mutation p.R769H 0.03 tolerated(0.52) benign(0.064) TCGA-DK-A1A5-01 15 25322078 25322078 G A SNORD116-9 3'Flank 0.40 TCGA-DK-A1A5-01 15 40627333 40627333 G A C15orf52 3'UTR 0.21 TCGA-DK-A1A5-01 15 43783886 43783886 G T TP53BP1 Missense_Mutation p.Q118K 0.34 tolerated(0.92) benign(0.279) TCGA-DK-A1A5-01 15 45007713 45007713 G A B2M Missense_Mutation p.D54N 0.21 tolerated(0.14) benign(0.005) TCGA-DK-A1A5-01 15 45898737 45898737 C T BLOC1S6 3'UTR 0.21 TCGA-DK-A1A5-01 15 59502740 59502740 G A MYO1E Silent p.I445I 0.13 TCGA-DK-A1A5-01 15 74032895 74032895 G C C15orf59 Missense_Mutation p.S82C 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-DK-A1A5-01 15 74290639 74290639 G C PML Missense_Mutation p.E142Q 0.18 deleterious(0.02) probably_damaging(0.913) TCGA-DK-A1A5-01 15 75798059 75798059 C G PTPN9 Missense_Mutation p.D309H 0.35 deleterious(0.04) benign(0.408) TCGA-DK-A1A5-01 15 79296180 79296180 C T RASGRF1 Missense_Mutation p.E821K 0.44 tolerated(0.09) benign(0.005) TCGA-DK-A1A5-01 15 85401089 85401089 C T ALPK3 Silent p.L1242L 0.29 TCGA-DK-A1A5-01 15 99671728 99671728 G A SYNM Missense_Mutation p.G1054R 0.37 tolerated(0.18) benign(0.178) TCGA-DK-A1A5-01 16 11868313 11868313 G A ZC3H7A Missense_Mutation p.H228Y 0.42 deleterious(0.04) benign(0.001) TCGA-DK-A1A5-01 16 1842159 1842159 G A IGFALS Missense_Mutation p.S125L 0.29 deleterious(0.05) benign(0.021) TCGA-DK-A1A5-01 16 20410611 20410611 G A PDILT Silent p.L4L 0.20 TCGA-DK-A1A5-01 16 20430712 20430712 C G ACSM5 Nonsense_Mutation p.S193* 0.40 TCGA-DK-A1A5-01 16 29115398 29115398 C G RRN3P2 Intron 0.21 TCGA-DK-A1A5-01 16 29999180 29999180 G A TAOK2 Missense_Mutation p.R1196Q 0.17 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-DK-A1A5-01 16 4945714 4945714 G A PPL Missense_Mutation p.H326Y 0.44 tolerated(0.06) benign(0.009) TCGA-DK-A1A5-01 16 56906612 56906612 G C SLC12A3 Missense_Mutation p.D337H 0.50 deleterious(0.02) possibly_damaging(0.689) TCGA-DK-A1A5-01 16 58071406 58071406 C G MMP15 Missense_Mutation p.Q65E 0.22 deleterious(0.04) benign(0.246) TCGA-DK-A1A5-01 16 58537754 58537754 C G NDRG4 Missense_Mutation p.S77C 0.12 deleterious(0.03) possibly_damaging(0.834) TCGA-DK-A1A5-01 16 66584022 66584022 G C TK2 5'UTR 0.54 TCGA-DK-A1A5-01 16 67210678 67210678 C A KIAA0895L 3'UTR 0.12 TCGA-DK-A1A5-01 16 67915727 67915727 G C EDC4 Missense_Mutation p.E995Q 0.24 tolerated(0.54) benign(0.06) TCGA-DK-A1A5-01 16 67963754 67963754 G C CTRL 3'UTR 0.15 TCGA-DK-A1A5-01 16 67964633 67964633 G A CTRL Missense_Mutation p.S105F 0.20 deleterious(0.01) possibly_damaging(0.616) TCGA-DK-A1A5-01 16 72923775 72923775 G C ZFHX3 Silent p.L1101L 0.09 TCGA-DK-A1A5-01 16 81194452 81194452 C A PKD1L2 RNA 0.22 TCGA-DK-A1A5-01 16 85701811 85701811 C G GSE1 Missense_Mutation p.P1066A 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-DK-A1A5-01 16 89805349 89805349 G C FANCA Missense_Mutation p.L1401V 0.54 tolerated(0.6) benign(0.063) TCGA-DK-A1A5-01 17 16623915 16623915 C T CCDC144A Missense_Mutation p.H612Y 0.09 tolerated(1) benign(0.253) TCGA-DK-A1A5-01 17 18004839 18004839 G C DRG2 Missense_Mutation p.D222H 0.40 deleterious(0.01) probably_damaging(1) TCGA-DK-A1A5-01 17 18005268 18005268 G A DRG2 Missense_Mutation p.E255K 0.68 deleterious(0.01) benign(0.176) TCGA-DK-A1A5-01 17 18498091 18498091 G A CCDC144B RNA 0.10 TCGA-DK-A1A5-01 17 18700946 18700946 G A TVP23B Missense_Mutation p.D99N 0.17 tolerated(0.06) benign(0.33) TCGA-DK-A1A5-01 17 27975200 27975200 C G SSH2 Missense_Mutation p.M436I 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1A5-01 17 3721711 3721711 G A C17orf85 Missense_Mutation p.R386W 0.26 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-DK-A1A5-01 17 37868216 37868216 C G ERBB2 Missense_Mutation p.L313V 0.97 tolerated(0.07) benign(0.419) TCGA-DK-A1A5-01 17 37903176 37903176 C T GRB7 3'UTR 0.97 TCGA-DK-A1A5-01 17 42092411 42092411 C G TMEM101 5'UTR 0.50 TCGA-DK-A1A5-01 17 48776867 48776867 G C ANKRD40 Missense_Mutation p.P224R 0.24 tolerated(0.16) possibly_damaging(0.524) TCGA-DK-A1A5-01 17 5085754 5085754 C G ZNF594 Missense_Mutation p.E600Q 0.56 tolerated(0.25) possibly_damaging(0.706) TCGA-DK-A1A5-01 17 56671019 56671019 G A TEX14 Missense_Mutation p.P831S 0.05 tolerated(0.46) benign(0.006) TCGA-DK-A1A5-01 17 61611504 61611504 C T KCNH6 Silent p.F311F 0.07 TCGA-DK-A1A5-01 17 67178946 67178946 G C ABCA10 Nonsense_Mutation p.S834* 0.14 TCGA-DK-A1A5-01 17 72297252 72297252 A G DNAI2 Missense_Mutation p.K311R 0.36 tolerated(0.17) benign(0.003) TCGA-DK-A1A5-01 17 7486993 7486993 A G MPDU1 5'UTR 0.63 TCGA-DK-A1A5-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 17 78118038 78118038 C G EIF4A3 Missense_Mutation p.E59Q 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A1A5-01 17 79164797 79164797 C G AZI1 Silent p.L951L 0.17 TCGA-DK-A1A5-01 17 79164838 79164838 C G AZI1 Missense_Mutation p.E938Q 0.18 deleterious(0) possibly_damaging(0.9) TCGA-DK-A1A5-01 17 79165108 79165108 C T AZI1 Missense_Mutation p.E884K 0.25 deleterious(0.01) probably_damaging(0.928) TCGA-DK-A1A5-01 17 79165121 79165121 C T AZI1 Silent p.L879L 0.22 TCGA-DK-A1A5-01 17 80053331 80053331 G A FASN Missense_Mutation p.R49W 0.48 deleterious(0) probably_damaging(0.951) TCGA-DK-A1A5-01 18 14105771 14105771 C G ZNF519 Missense_Mutation p.K256N 0.60 deleterious(0.03) benign(0.127) TCGA-DK-A1A5-01 18 33722264 33722264 C G ELP2 Silent p.L268L 0.15 TCGA-DK-A1A5-01 18 43450556 43450556 C G EPG5 Missense_Mutation p.Q2067H 0.22 tolerated(0.46) benign(0.001) TCGA-DK-A1A5-01 18 54291545 54291545 C G TXNL1 Missense_Mutation p.E115Q 0.18 deleterious(0.04) possibly_damaging(0.84) TCGA-DK-A1A5-01 19 10394842 10394842 G C ICAM1 Missense_Mutation p.Q257H 0.07 tolerated(0.19) benign(0.195) TCGA-DK-A1A5-01 19 11123726 11123726 C T SMARCA4 Silent p.L792L 0.50 TCGA-DK-A1A5-01 19 15794481 15794481 C T CYP4F12 Missense_Mutation p.R276C 0.30 tolerated(0.12) benign(0.035) TCGA-DK-A1A5-01 19 16001184 16001184 G A CYP4F2 Silent p.I195I 0.50 TCGA-DK-A1A5-01 19 1811504 1811504 C A ATP8B3 Nonsense_Mutation p.E78* 0.15 TCGA-DK-A1A5-01 19 19741332 19741332 C G GMIP Missense_Mutation p.Q829H 0.60 tolerated(0.08) benign(0.006) TCGA-DK-A1A5-01 19 2853300 2853300 G A ZNF555 Missense_Mutation p.G413R 0.06 tolerated(0.54) probably_damaging(1) TCGA-DK-A1A5-01 19 36562497 36562497 A G WDR62 Missense_Mutation p.I308V 0.04 tolerated(0.17) benign(0.396) TCGA-DK-A1A5-01 19 36574043 36574043 G A WDR62 Missense_Mutation p.E484K 0.07 tolerated(0.12) benign(0.078) TCGA-DK-A1A5-01 19 39220017 39220017 G A ACTN4 Missense_Mutation p.G894D 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-DK-A1A5-01 19 39421110 39421110 G A SARS2 Silent p.I89I 0.18 TCGA-DK-A1A5-01 19 40971640 40971640 G A BLVRB 5'UTR 0.18 TCGA-DK-A1A5-01 19 45997499 45997499 C G RTN2 Missense_Mutation p.E247Q 0.66 deleterious_low_confidence(0.02) possibly_damaging(0.701) TCGA-DK-A1A5-01 19 49436959 49436959 G C DHDH 5'UTR 0.19 TCGA-DK-A1A5-01 19 49558233 49558233 G A CGB7 Silent p.G16G 0.68 TCGA-DK-A1A5-01 19 49814617 49814617 C G SLC6A16 5'UTR 0.21 TCGA-DK-A1A5-01 19 50921177 50921177 C G POLD1 Missense_Mutation p.F1099L 0.45 deleterious(0) probably_damaging(0.971) TCGA-DK-A1A5-01 19 51957508 51957508 C G SIGLEC8 Missense_Mutation p.E404Q 0.13 tolerated(0.06) benign(0.201) TCGA-DK-A1A5-01 19 53303274 53303274 C T ZNF28 Silent p.K608K 0.66 TCGA-DK-A1A5-01 19 55333227 55333227 G A KIR3DL1 Missense_Mutation p.G288E 0.65 deleterious(0.01) benign(0.091) TCGA-DK-A1A5-01 19 9067796 9067796 C T MUC16 Silent p.V6550V 0.57 TCGA-DK-A1A5-01 1 100379088 100379088 G C AGL Missense_Mutation p.A1319P 0.26 tolerated(0.27) benign(0.063) TCGA-DK-A1A5-01 1 104160582 104160582 C T AMY2A Missense_Mutation p.P59S 0.17 deleterious(0) possibly_damaging(0.585) TCGA-DK-A1A5-01 1 117529679 117529679 A C PTGFRN 3'UTR 0.26 TCGA-DK-A1A5-01 1 145586854 145586854 G A NUDT17 Silent p.V278V 0.38 TCGA-DK-A1A5-01 1 149885327 149885327 G T SV2A Silent p.V22V 0.41 TCGA-DK-A1A5-01 1 151138954 151138954 G A SCNM1 Missense_Mutation p.R20K 0.14 deleterious(0.01) possibly_damaging(0.803) TCGA-DK-A1A5-01 1 153800712 153800712 C T GATAD2B Missense_Mutation p.E38K 0.37 deleterious(0.02) probably_damaging(0.971) TCGA-DK-A1A5-01 1 155020372 155020372 C G DCST1 Silent p.L574L 0.09 TCGA-DK-A1A5-01 1 155152267 155152267 G A TRIM46 Missense_Mutation p.R482Q 0.18 tolerated(0.25) possibly_damaging(0.883) TCGA-DK-A1A5-01 1 155290466 155290466 C G RUSC1 5'Flank 0.58 TCGA-DK-A1A5-01 1 155290498 155290498 C A RUSC1 5'Flank 0.64 TCGA-DK-A1A5-01 1 156497752 156497752 G A IQGAP3 Missense_Mutation p.H1592Y 0.49 tolerated(0.07) benign(0.003) TCGA-DK-A1A5-01 1 162725538 162725538 A G DDR2 Missense_Mutation p.Y217C 0.57 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 1 16577092 16577092 C G FBXO42 3'UTR 0.52 TCGA-DK-A1A5-01 1 16577222 16577222 C G FBXO42 Missense_Mutation p.Q699H 0.44 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DK-A1A5-01 1 16577397 16577397 C T FBXO42 Missense_Mutation p.C641Y 0.46 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DK-A1A5-01 1 186304579 186304579 G A TPR Missense_Mutation p.A1601V 0.14 possibly_damaging(0.499) TCGA-DK-A1A5-01 1 202571539 202571539 C T SYT2 Silent p.L200L 0.65 TCGA-DK-A1A5-01 1 214794110 214794110 C T CENPF Missense_Mutation p.S229L 0.65 benign(0.013) TCGA-DK-A1A5-01 1 222713588 222713588 G T HHIPL2 Missense_Mutation p.S405Y 0.69 tolerated(0.28) possibly_damaging(0.646) TCGA-DK-A1A5-01 1 22828819 22828819 C G ZBTB40 Missense_Mutation p.S351C 0.39 deleterious(0.01) possibly_damaging(0.7) TCGA-DK-A1A5-01 1 22828866 22828866 C T ZBTB40 Nonsense_Mutation p.Q367* 0.49 TCGA-DK-A1A5-01 1 238048519 238048519 G A ZP4 Silent p.I419I 0.69 TCGA-DK-A1A5-01 1 245861405 245861405 C G KIF26B Intron 0.65 TCGA-DK-A1A5-01 1 247200919 247200919 C A ZNF670 Silent p.V334V 0.42 TCGA-DK-A1A5-01 1 248685406 248685406 C T OR2G6 Silent p.L153L 0.60 TCGA-DK-A1A5-01 1 26772917 26772917 A T DHDDS Missense_Mutation p.Y145F 0.43 deleterious(0.01) benign(0.124) TCGA-DK-A1A5-01 1 29438918 29438918 G C EPB41 Missense_Mutation p.K818N 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 1 34329950 34329950 C G HMGB4 Nonsense_Mutation p.S53* 0.17 TCGA-DK-A1A5-01 1 44169940 44169940 G A KDM4A Missense_Mutation p.E1032K 0.45 tolerated(0.15) possibly_damaging(0.899) TCGA-DK-A1A5-01 1 50610766 50610766 C T ELAVL4 Silent p.I66I 0.17 TCGA-DK-A1A5-01 1 52863536 52863536 C T ORC1 Splice_Site p.X75_splice 0.26 TCGA-DK-A1A5-01 1 54060249 54060249 C T GLIS1 Silent p.L109L 0.27 TCGA-DK-A1A5-01 1 55523842 55523842 C G PCSK9 Silent p.P438P 0.16 TCGA-DK-A1A5-01 1 6639446 6639446 C G TAS1R1 Missense_Mutation p.F776L 0.23 tolerated(0.09) benign(0.232) TCGA-DK-A1A5-01 1 6697333 6697333 C A DNAJC11 Silent p.V483V 0.44 TCGA-DK-A1A5-01 1 94476481 94476481 C T ABCA4 Silent p.E1863E 0.20 TCGA-DK-A1A5-01 1 94674863 94674863 G A ARHGAP29 Silent p.L128L 0.31 TCGA-DK-A1A5-01 20 31805357 31805357 C T BPIFA3 Silent p.L5L 0.22 TCGA-DK-A1A5-01 20 34797659 34797659 C G EPB41L1 Missense_Mutation p.L640V 0.31 tolerated(0.15) benign(0.064) TCGA-DK-A1A5-01 20 35521386 35521386 G A SAMHD1 Silent p.L610L 0.36 TCGA-DK-A1A5-01 20 3846809 3846809 C T MAVS 3'UTR 0.29 TCGA-DK-A1A5-01 20 43535062 43535062 G A YWHAB Missense_Mutation p.G242R 0.30 tolerated_low_confidence(0.15) benign(0.025) TCGA-DK-A1A5-01 20 47734529 47734529 G C STAU1 Missense_Mutation p.Q432E 0.27 tolerated(0.35) benign(0.194) TCGA-DK-A1A5-01 20 50049280 50049280 C T NFATC2 Silent p.K682K 0.16 TCGA-DK-A1A5-01 20 55027048 55027048 C G CASS4 Silent p.L272L 0.40 TCGA-DK-A1A5-01 20 62324319 62324319 C G RTEL1 Silent p.L962L 0.24 TCGA-DK-A1A5-01 21 31768802 31768802 G A KRTAP13-1 Missense_Mutation p.G133E 0.63 deleterious(0.04) probably_damaging(0.982) TCGA-DK-A1A5-01 21 34012014 34012014 C T SYNJ1 Missense_Mutation p.E1261K 0.29 deleterious_low_confidence(0.01) benign(0.393) TCGA-DK-A1A5-01 21 34640751 34640751 C G AP000295.9 Missense_Mutation p.F162L 0.16 tolerated(0.44) benign(0.126) TCGA-DK-A1A5-01 21 36079652 36079652 C T CLIC6 Silent p.G483G 0.45 TCGA-DK-A1A5-01 21 38538204 38538204 C T TTC3 Missense_Mutation p.P1230S 0.16 deleterious(0.05) benign(0.004) TCGA-DK-A1A5-01 21 41459119 41459119 C T DSCAM Missense_Mutation p.A1316T 0.25 tolerated(1) benign(0.006) TCGA-DK-A1A5-01 21 46228946 46228946 G A SUMO3 Intron 0.62 TCGA-DK-A1A5-01 22 21334411 21334411 G A AIFM3 Silent p.V585V 0.41 TCGA-DK-A1A5-01 22 24236667 24236667 G A MIF Silent p.P2P 0.50 TCGA-DK-A1A5-01 22 26422680 26422680 C T MYO18B Missense_Mutation p.S2247L 0.12 deleterious(0) possibly_damaging(0.901) TCGA-DK-A1A5-01 22 30079015 30079015 G A NF2 Intron 0.37 TCGA-DK-A1A5-01 22 32480979 32480979 C T SLC5A1 Silent p.F326F 0.22 TCGA-DK-A1A5-01 22 32924939 32924939 C T SYN3 Silent p.L384L 0.19 TCGA-DK-A1A5-01 22 36624218 36624218 C G APOL2 Missense_Mutation p.L82F 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A1A5-01 22 36624296 36624296 C G APOL2 Silent p.L56L 0.26 TCGA-DK-A1A5-01 22 38010268 38010268 G A GGA1 Missense_Mutation p.E39K 0.22 tolerated(1) benign(0.002) TCGA-DK-A1A5-01 22 41322359 41322359 C G XPNPEP3 Missense_Mutation p.Q482E 0.33 tolerated(1) benign(0.001) TCGA-DK-A1A5-01 22 41565561 41565561 G C EP300 Missense_Mutation p.L1409F 0.07 benign(0.143) TCGA-DK-A1A5-01 2 109513298 109513298 C T EDAR 3'UTR 0.87 TCGA-DK-A1A5-01 2 113333340 113333340 C G POLR1B 3'UTR 0.26 TCGA-DK-A1A5-01 2 11773124 11773124 G A GREB1 Silent p.V1642V 0.39 TCGA-DK-A1A5-01 2 119750864 119750864 A G MARCO Missense_Mutation p.K473E 0.42 tolerated(0.22) unknown(0) TCGA-DK-A1A5-01 2 121732608 121732608 G C GLI2 Missense_Mutation p.E431Q 0.37 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A5-01 2 122485562 122485562 C T NIFK Intron 0.20 TCGA-DK-A1A5-01 2 122485567 122485567 C G NIFK Intron 0.21 TCGA-DK-A1A5-01 2 122486097 122486097 C T NIFK Missense_Mutation p.E194K 0.20 tolerated(0.57) benign(0.002) TCGA-DK-A1A5-01 2 153519641 153519641 C T PRPF40A Missense_Mutation p.E712K 0.37 deleterious(0) benign(0.292) TCGA-DK-A1A5-01 2 170127522 170127522 C T LRP2 Missense_Mutation p.G738R 0.17 benign(0.157) TCGA-DK-A1A5-01 2 175335161 175335161 C G GPR155 Missense_Mutation p.G328A 0.43 tolerated(0.42) possibly_damaging(0.883) TCGA-DK-A1A5-01 2 175618052 175618052 A G CHRNA1 Intron 0.50 TCGA-DK-A1A5-01 2 17698327 17698327 G C RAD51AP2 Missense_Mutation p.I452M 0.39 tolerated(1) benign(0.001) TCGA-DK-A1A5-01 2 178416874 178416874 T C TTC30B Silent p.S206S 0.13 TCGA-DK-A1A5-01 2 178483399 178483399 C T TTC30A Missense_Mutation p.D11N 0.25 deleterious(0) benign(0.292) TCGA-DK-A1A5-01 2 178483504 178483504 G A TTC30A 5'UTR 0.27 TCGA-DK-A1A5-01 2 196605504 196605504 C G DNAH7 Missense_Mutation p.D3952H 0.23 deleterious(0) probably_damaging(0.997) TCGA-DK-A1A5-01 2 20511319 20511319 C A PUM2 Missense_Mutation p.D152Y 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.771) TCGA-DK-A1A5-01 2 206872011 206872011 C T INO80D Missense_Mutation p.E639K 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 2 219679423 219679423 C G CYP27A1 Silent p.V473V 0.29 TCGA-DK-A1A5-01 2 220439960 220439960 C T INHA Silent p.F271F 0.28 TCGA-DK-A1A5-01 2 220466159 220466159 C G STK11IP Silent p.L99L 0.30 TCGA-DK-A1A5-01 2 233899698 233899698 T - NEU2 Frame_Shift_Del p.Y359Tfs*11 0.24 TCGA-DK-A1A5-01 2 27716863 27716873 CTGGGGGACTC TT FNDC4 In_Frame_Del p.S127_G130delinsR 0.13 TCGA-DK-A1A5-01 2 36744610 36744610 G C CRIM1 Missense_Mutation p.E711Q 0.10 tolerated(0.09) probably_damaging(0.994) TCGA-DK-A1A5-01 2 42995022 42995022 A T HAAO Missense_Mutation p.V226E 0.47 tolerated(0.98) benign(0.439) TCGA-DK-A1A5-01 2 43939476 43939476 C T PLEKHH2 Missense_Mutation p.S805F 0.50 tolerated(1) benign(0) TCGA-DK-A1A5-01 2 46608758 46608758 G A EPAS1 Missense_Mutation p.R690Q 0.25 tolerated(0.65) benign(0.002) TCGA-DK-A1A5-01 2 55461976 55461976 C G RPS27A Missense_Mutation p.L67V 0.16 tolerated(0.06) benign(0.06) TCGA-DK-A1A5-01 2 68273488 68273488 A T C1D Missense_Mutation p.S65T 0.33 deleterious(0.01) probably_damaging(0.91) TCGA-DK-A1A5-01 2 97216890 97216890 C T ARID5A Nonsense_Mutation p.Q209* 0.37 TCGA-DK-A1A5-01 3 10078013 10078013 T G FANCD2 Missense_Mutation p.F161V 0.18 tolerated(0.16) benign(0.025) TCGA-DK-A1A5-01 3 121825321 121825321 G A CD86 Missense_Mutation p.R226Q 0.44 tolerated(0.6) benign(0.004) TCGA-DK-A1A5-01 3 124380748 124380748 G A KALRN Missense_Mutation p.M197I 0.44 deleterious(0.01) possibly_damaging(0.752) TCGA-DK-A1A5-01 3 139085601 139085601 C T COPB2 Missense_Mutation p.G565S 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 3 154139250 154139250 G A GPR149 Silent p.L401L 0.33 TCGA-DK-A1A5-01 3 160156351 160156351 G A TRIM59 Silent p.L207L 0.20 TCGA-DK-A1A5-01 3 17053637 17053637 G A PLCL2 Silent p.L807L 0.16 TCGA-DK-A1A5-01 3 178942564 178942564 G C PIK3CA Missense_Mutation p.E791Q 0.23 tolerated(0.14) benign(0.104) TCGA-DK-A1A5-01 3 36872833 36872833 G C TRANK1 Silent p.V2703V 0.70 TCGA-DK-A1A5-01 3 37376609 37376609 G A GOLGA4 Silent p.K2108K 0.25 TCGA-DK-A1A5-01 3 40457435 40457435 G A ENTPD3 Silent p.K234K 0.29 TCGA-DK-A1A5-01 3 46940250 46940250 C G PTH1R Missense_Mutation p.S246C 0.51 deleterious(0) probably_damaging(0.981) TCGA-DK-A1A5-01 3 47144868 47144868 G A SETD2 Missense_Mutation p.H1629Y 0.20 deleterious(0) possibly_damaging(0.885) TCGA-DK-A1A5-01 3 5243458 5243458 C T EDEM1 Missense_Mutation p.S236F 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 3 52442604 52442604 G C BAP1 Missense_Mutation p.I47M 0.11 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A5-01 3 62423823 62423823 G A CADPS Missense_Mutation p.R1245C 0.10 deleterious(0.05) possibly_damaging(0.689) TCGA-DK-A1A5-01 3 9965627 9965627 G T IL17RC Nonsense_Mutation p.E300* 0.54 TCGA-DK-A1A5-01 4 100125297 100125297 C G ADH6 3'UTR 0.15 TCGA-DK-A1A5-01 4 100235073 100235073 G C ADH1B Missense_Mutation p.Q245E 0.45 tolerated(0.07) benign(0.008) TCGA-DK-A1A5-01 4 126337752 126337752 C A FAT4 Silent p.V2331V 0.20 TCGA-DK-A1A5-01 4 175897020 175897020 C T ADAM29 Missense_Mutation p.S115F 0.21 deleterious(0) probably_damaging(0.944) TCGA-DK-A1A5-01 4 2130935 2130935 G A POLN Missense_Mutation p.S613L 0.24 deleterious(0) possibly_damaging(0.697) TCGA-DK-A1A5-01 4 22449100 22449100 G A GPR125 Nonsense_Mutation p.Q170* 0.28 TCGA-DK-A1A5-01 4 48517148 48517148 C T FRYL Missense_Mutation p.E2612K 0.44 tolerated_low_confidence(0.16) benign(0.018) TCGA-DK-A1A5-01 4 73013407 73013407 C T NPFFR2 Nonsense_Mutation p.Q483* 0.32 TCGA-DK-A1A5-01 4 76794444 76794444 C T PPEF2 Missense_Mutation p.D448N 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 4 7985051 7985051 G C ABLIM2 Silent p.L588L 0.14 TCGA-DK-A1A5-01 5 10391786 10391786 G C MARCH6 Missense_Mutation p.E237Q 0.49 tolerated(0.37) benign(0.005) TCGA-DK-A1A5-01 5 137222941 137222941 G - MYOT Frame_Shift_Del p.V456Ffs*9 0.23 TCGA-DK-A1A5-01 5 140558048 140558048 G A PCDHB8 Missense_Mutation p.E145K 0.15 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-DK-A1A5-01 5 140683343 140683343 G A SLC25A2 Silent p.F30F 0.29 TCGA-DK-A1A5-01 5 140769192 140769192 G C PCDHGB4 Missense_Mutation p.E581Q 0.22 tolerated(0.31) benign(0.079) TCGA-DK-A1A5-01 5 150666828 150666828 C T SLC36A3 Silent p.L270L 0.28 TCGA-DK-A1A5-01 5 151179852 151179852 C T G3BP1 Silent p.F343F 0.33 TCGA-DK-A1A5-01 5 161116651 161116651 C A GABRA6 Missense_Mutation p.P180H 0.32 deleterious(0) probably_damaging(0.95) TCGA-DK-A1A5-01 5 176815096 176815096 G A SLC34A1 Missense_Mutation p.R249Q 0.25 tolerated(0.63) benign(0.003) TCGA-DK-A1A5-01 5 179023597 179023597 G A RUFY1 Missense_Mutation p.E516K 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A1A5-01 5 34043213 34043213 G T C1QTNF3 Silent p.L6L 0.20 TCGA-DK-A1A5-01 5 37020905 37020905 G A NIPBL Missense_Mutation p.D1752N 0.21 tolerated(0.18) probably_damaging(0.954) TCGA-DK-A1A5-01 5 43650630 43650630 C A NNT Missense_Mutation p.S553Y 0.26 deleterious(0.02) possibly_damaging(0.748) TCGA-DK-A1A5-01 5 50679448 50679448 G C ISL1 5'UTR 0.33 TCGA-DK-A1A5-01 5 76128897 76128897 C G F2RL1 Missense_Mutation p.F155L 0.28 deleterious(0) possibly_damaging(0.872) TCGA-DK-A1A5-01 5 89815090 89815090 G A LYSMD3 Missense_Mutation p.S156L 0.25 tolerated(0.05) benign(0.008) TCGA-DK-A1A5-01 6 109766413 109766413 C G MICAL1 Missense_Mutation p.L956F 0.16 deleterious(0) possibly_damaging(0.903) TCGA-DK-A1A5-01 6 117746802 117746802 A G ROS1 Silent p.C6C 0.18 TCGA-DK-A1A5-01 6 12122972 12122972 T A HIVEP1 Missense_Mutation p.C982S 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A5-01 6 137041602 137041602 G C MAP3K5 Missense_Mutation p.L192V 0.48 tolerated(0.24) benign(0.308) TCGA-DK-A1A5-01 6 151152717 151152717 C G PLEKHG1 Missense_Mutation p.H824D 0.44 tolerated(0.89) benign(0) TCGA-DK-A1A5-01 6 152583252 152583252 C T SYNE1 Missense_Mutation p.R6296K 0.27 benign(0.015) TCGA-DK-A1A5-01 6 25773814 25773814 C G SLC17A4 Missense_Mutation p.S300C 0.08 tolerated(0.61) probably_damaging(0.956) TCGA-DK-A1A5-01 6 26056012 26056012 C T HIST1H1C 3'UTR 0.32 TCGA-DK-A1A5-01 6 26459787 26459787 C T BTN2A1 Missense_Mutation p.S54L 0.16 tolerated(0.06) benign(0.119) TCGA-DK-A1A5-01 6 27100942 27100942 T G HIST1H2AG Missense_Mutation p.V31G 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.903) TCGA-DK-A1A5-01 6 30882669 30882669 C T VARS2 Missense_Mutation p.S49L 0.35 tolerated_low_confidence(0.23) benign(0.004) TCGA-DK-A1A5-01 6 31928970 31928970 C G SKIV2L Intron 0.33 TCGA-DK-A1A5-01 6 32147331 32147331 C T RNF5 Missense_Mutation p.H52Y 0.36 tolerated(0.07) benign(0.208) TCGA-DK-A1A5-01 6 33246064 33246064 G C B3GALT4 Missense_Mutation p.E290Q 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 6 38810631 38810631 T C DNAH8 Silent p.L1382L 0.10 TCGA-DK-A1A5-01 6 42712930 42712930 C G TBCC Missense_Mutation p.W294C 0.27 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A5-01 6 42713073 42713073 C G TBCC Missense_Mutation p.E247Q 0.29 deleterious(0.01) possibly_damaging(0.775) TCGA-DK-A1A5-01 6 42713214 42713214 C G TBCC Missense_Mutation p.E200Q 0.39 deleterious(0) possibly_damaging(0.59) TCGA-DK-A1A5-01 6 42858210 42858210 G C C6orf226 3'UTR 0.30 TCGA-DK-A1A5-01 6 46214588 46214588 G C RCAN2 Silent p.L156L 0.17 TCGA-DK-A1A5-01 6 4996532 4996532 C T RPP40 Missense_Mutation p.E228K 0.33 tolerated(0.5) benign(0.012) TCGA-DK-A1A5-01 6 7231959 7231959 C T RREB1 Silent p.A1209A 0.35 TCGA-DK-A1A5-01 6 90576496 90576496 G A CASP8AP2 RNA 0.17 TCGA-DK-A1A5-01 7 102246348 102246348 C T RASA4 Missense_Mutation p.G129R 0.38 tolerated(0.18) benign(0.027) TCGA-DK-A1A5-01 7 103183210 103183210 C G RELN Missense_Mutation p.L2213F 0.24 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A5-01 7 135261759 135261759 G C NUP205 Silent p.L177L 0.33 TCGA-DK-A1A5-01 7 135263632 135263632 G A NUP205 Silent p.L337L 0.28 TCGA-DK-A1A5-01 7 135302356 135302356 C T NUP205 Missense_Mutation p.H1233Y 0.20 deleterious(0) possibly_damaging(0.897) TCGA-DK-A1A5-01 7 148769075 148769075 C T ZNF786 Silent p.T263T 0.34 TCGA-DK-A1A5-01 7 150390122 150390122 C T GIMAP2 Nonsense_Mutation p.Q250* 0.47 TCGA-DK-A1A5-01 7 20438615 20438615 G A ITGB8 Missense_Mutation p.E427K 0.29 tolerated(1) benign(0.021) TCGA-DK-A1A5-01 7 23180423 23180423 G A KLHL7 Missense_Mutation p.E160K 0.54 tolerated(0.06) possibly_damaging(0.836) TCGA-DK-A1A5-01 7 2632715 2632715 C T IQCE Missense_Mutation p.A435V 0.17 tolerated(0.65) benign(0.004) TCGA-DK-A1A5-01 7 34192756 34192756 C G BMPER Missense_Mutation p.I643M 0.39 tolerated(0.08) benign(0.048) TCGA-DK-A1A5-01 7 40134032 40134032 C G CDK13 Missense_Mutation p.S1331C 0.58 deleterious_low_confidence(0.02) possibly_damaging(0.555) TCGA-DK-A1A5-01 7 43484701 43484701 G A HECW1 Missense_Mutation p.A644T 0.46 tolerated_low_confidence(0.52) benign(0.001) TCGA-DK-A1A5-01 7 5781044 5781044 C T RNF216 Missense_Mutation p.E202K 0.17 deleterious_low_confidence(0.05) probably_damaging(0.997) TCGA-DK-A1A5-01 7 6476128 6476128 G C DAGLB Missense_Mutation p.S95C 0.54 tolerated(0.11) possibly_damaging(0.717) TCGA-DK-A1A5-01 7 72721626 72721626 C T NSUN5 Silent p.V115V 0.24 TCGA-DK-A1A5-01 7 75048154 75048154 G C POM121C Silent p.S963S 0.17 TCGA-DK-A1A5-01 7 81388061 81388061 G C HGF Nonsense_Mutation p.S105* 0.15 TCGA-DK-A1A5-01 7 91603155 91603155 C T AKAP9 Missense_Mutation p.S60L 0.38 benign(0.004) TCGA-DK-A1A5-01 7 93516176 93516176 G A TFPI2 Missense_Mutation p.R222C 0.27 tolerated(0.14) benign(0.066) TCGA-DK-A1A5-01 7 96747140 96747140 G A ACN9 Silent p.V35V 0.26 TCGA-DK-A1A5-01 7 99710524 99710524 C T TAF6 Silent p.Q194Q 0.28 TCGA-DK-A1A5-01 8 104337581 104337581 G A FZD6 Missense_Mutation p.R416Q 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 8 10468223 10468223 C G RP1L1 Missense_Mutation p.E1129Q 0.56 benign(0.017) TCGA-DK-A1A5-01 8 124335198 124335198 C A ATAD2 Missense_Mutation p.D1371Y 0.36 deleterious(0) probably_damaging(0.992) TCGA-DK-A1A5-01 8 124346190 124346190 C T ATAD2 Missense_Mutation p.D1136N 0.17 tolerated(0.46) benign(0.001) TCGA-DK-A1A5-01 8 125568500 125568500 C T MTSS1 Silent p.R459R 0.28 TCGA-DK-A1A5-01 8 126114679 126114679 C G NSMCE2 Missense_Mutation p.S36C 0.13 deleterious(0) possibly_damaging(0.711) TCGA-DK-A1A5-01 8 126114697 126114697 C T NSMCE2 Missense_Mutation p.S42F 0.14 deleterious(0) benign(0.107) TCGA-DK-A1A5-01 8 145806415 145806415 C T ARHGAP39 Silent p.L109L 0.57 TCGA-DK-A1A5-01 8 22442667 22442667 C T PDLIM2 Silent p.I401I 0.56 TCGA-DK-A1A5-01 8 53084883 53084883 C T ST18 Missense_Mutation p.D180N 0.35 tolerated(0.43) benign(0.001) TCGA-DK-A1A5-01 8 53084982 53084982 C T ST18 Missense_Mutation p.E147K 0.37 deleterious(0.01) benign(0.19) TCGA-DK-A1A5-01 8 66659966 66659966 C G PDE7A Missense_Mutation p.R119T 0.31 tolerated(0.1) benign(0.029) TCGA-DK-A1A5-01 8 67086866 67086866 G A TRIM55 3'UTR 0.19 TCGA-DK-A1A5-01 8 67705962 67705962 G C SGK3 5'UTR 0.29 TCGA-DK-A1A5-01 8 68981310 68981310 G C PREX2 Missense_Mutation p.R461T 0.35 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A5-01 8 87439902 87439902 A T WWP1 Missense_Mutation p.R396S 0.30 deleterious(0) possibly_damaging(0.882) TCGA-DK-A1A5-01 9 124110421 124110421 G C STOM Missense_Mutation p.L178V 0.66 deleterious(0.01) probably_damaging(1) TCGA-DK-A1A5-01 9 136804249 136804249 G T VAV2 Silent p.L99L 0.22 TCGA-DK-A1A5-01 9 137593102 137593102 C T COL5A1 Missense_Mutation p.R193C 0.47 probably_damaging(1) TCGA-DK-A1A5-01 9 138645821 138645821 C T KCNT1 Missense_Mutation p.S158L 0.30 tolerated(0.11) benign(0.007) TCGA-DK-A1A5-01 9 140707937 140707937 C T EHMT1 Silent p.C1045C 0.23 TCGA-DK-A1A5-01 9 20874759 20874759 C G FOCAD Missense_Mutation p.S757C 0.50 deleterious(0.04) possibly_damaging(0.503) TCGA-DK-A1A5-01 9 2110409 2110409 C T SMARCA2 Missense_Mutation p.P1150S 0.66 possibly_damaging(0.876) TCGA-DK-A1A5-01 9 35386232 35386232 C T UNC13B Missense_Mutation p.S930F 0.63 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 9 74764526 74764526 C T GDA Silent p.F17F 0.38 TCGA-DK-A1A5-01 X 106082551 106082551 C T TBC1D8B Missense_Mutation p.S406F 0.45 tolerated(0.34) benign(0.001) TCGA-DK-A1A5-01 X 13337636 13337636 G T ATXN3L Missense_Mutation p.P140T 0.61 deleterious(0) probably_damaging(1) TCGA-DK-A1A5-01 X 152991184 152991184 G A ABCD1 Missense_Mutation p.E155K 0.80 deleterious(0) probably_damaging(0.928) TCGA-DK-A1A5-01 X 153095777 153095777 G A PDZD4 5'UTR 0.45 TCGA-DK-A1A5-01 X 153095778 153095778 G A PDZD4 5'UTR 0.45 TCGA-DK-A1A5-01 X 19947930 19947930 G A CXorf23 Silent p.F664F 0.82 TCGA-DK-A1A5-01 X 54841756 54841756 G T MAGED2 Nonsense_Mutation p.E488* 0.75 TCGA-DK-A1A5-01 X 64139077 64139077 C T ZC4H2 Missense_Mutation p.E136K 0.72 tolerated(0.34) possibly_damaging(0.87) TCGA-DK-A1A5-01 X 99663458 99663458 C T PCDH19 Silent p.A46A 0.39 TCGA-DK-A1A6-06 10 118236220 118236220 T C PNLIPRP3 Missense_Mutation p.V410A 0.38 deleterious(0.03) benign(0.292) TCGA-DK-A1A6-06 10 118236306 118236306 A C PNLIPRP3 Missense_Mutation p.N439H 0.30 deleterious(0.03) benign(0.389) TCGA-DK-A1A6-06 10 11962979 11962979 C T UPF2 3'UTR 0.70 TCGA-DK-A1A6-06 10 69925571 69925571 G C MYPN Silent p.V532V 0.31 TCGA-DK-A1A6-06 10 70406064 70406064 C G TET1 Missense_Mutation p.S1193W 0.18 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A6-06 10 70738718 70738718 C G DDX21 Missense_Mutation p.L675V 0.40 tolerated(0.1) benign(0.444) TCGA-DK-A1A6-06 10 75548903 75548903 G A ZSWIM8 Missense_Mutation p.D138N 0.24 deleterious(0) benign(0.109) TCGA-DK-A1A6-06 10 85992365 85992365 G C LRIT1 Missense_Mutation p.S397C 0.42 tolerated(0.06) possibly_damaging(0.619) TCGA-DK-A1A6-06 10 90356170 90356170 C T LIPJ Silent p.V191V 0.13 TCGA-DK-A1A6-06 10 90966884 90966884 C T CH25H Missense_Mutation p.V56M 0.23 tolerated(0.16) probably_damaging(0.929) TCGA-DK-A1A6-06 10 93390301 93390311 GCAGATCCCAC - PPP1R3C Frame_Shift_Del p.W110Vfs*2 0.39 TCGA-DK-A1A6-06 10 98823297 98823297 G A SLIT1 Silent p.I236I 0.50 TCGA-DK-A1A6-06 11 102220544 102220544 C G BIRC2 5'UTR 0.30 TCGA-DK-A1A6-06 11 108384189 108384189 G A EXPH5 Missense_Mutation p.S682F 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A1A6-06 11 113140906 113140906 C G NCAM1 Intron 0.14 TCGA-DK-A1A6-06 11 113860344 113860344 G C HTR3A Silent p.R470R 0.14 TCGA-DK-A1A6-06 11 17409306 17409306 G A KCNJ11 Silent p.V111V 0.38 TCGA-DK-A1A6-06 11 44089398 44089398 G A ACCS Nonsense_Mutation p.W74* 0.21 TCGA-DK-A1A6-06 11 45924153 45924153 G A MAPK8IP1 Missense_Mutation p.E279K 0.44 deleterious(0) probably_damaging(0.99) TCGA-DK-A1A6-06 11 46637415 46637415 C T HARBI1 Missense_Mutation p.E125K 0.21 tolerated(0.82) benign(0.086) TCGA-DK-A1A6-06 11 5079881 5079881 C T OR52E2 Silent p.%3D 0.27 TCGA-DK-A1A6-06 11 55037999 55037999 C T TRIM48 3'UTR 0.33 TCGA-DK-A1A6-06 11 558000 558000 G A C11orf35 Missense_Mutation p.R147C 0.50 tolerated(0.08) benign(0.002) TCGA-DK-A1A6-06 11 57106039 57106039 C T P2RX3 Silent p.S5S 0.10 TCGA-DK-A1A6-06 11 5776753 5776753 C G OR52N4 Missense_Mutation p.F261L 0.20 deleterious(0.04) benign(0.02) TCGA-DK-A1A6-06 11 61487650 61487650 G A DAGLA Missense_Mutation p.R8Q 0.28 tolerated(0.27) probably_damaging(0.984) TCGA-DK-A1A6-06 11 64360266 64360266 G C SLC22A12 Missense_Mutation p.D140H 0.16 deleterious(0.04) probably_damaging(0.977) TCGA-DK-A1A6-06 11 66083610 66083610 G A CD248 Missense_Mutation p.R297C 0.60 tolerated(0.07) possibly_damaging(0.84) TCGA-DK-A1A6-06 11 66407491 66407491 G A RBM4 Silent p.P103P 0.64 TCGA-DK-A1A6-06 11 66888787 66888787 G A KDM2A 5'UTR 0.60 TCGA-DK-A1A6-06 11 67934619 67934619 C G SUV420H1 Missense_Mutation p.R335T 0.09 deleterious(0.02) benign(0.119) TCGA-DK-A1A6-06 11 69631101 69631101 C T FGF3 Missense_Mutation p.R104Q 0.05 deleterious(0.05) possibly_damaging(0.642) TCGA-DK-A1A6-06 11 8457652 8457652 C T STK33 Missense_Mutation p.E328K 0.27 tolerated(0.12) benign(0.401) TCGA-DK-A1A6-06 11 8496434 8496434 C G STK33 Missense_Mutation p.D7H 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.565) TCGA-DK-A1A6-06 11 94194101 94194101 C G MRE11A Splice_Site p.X442_splice 0.26 TCGA-DK-A1A6-06 12 103288533 103288533 C T PAH Missense_Mutation p.R111Q 0.27 tolerated(0.15) possibly_damaging(0.459) TCGA-DK-A1A6-06 12 108147715 108147715 C G PRDM4 Missense_Mutation p.R106T 0.33 deleterious_low_confidence(0) benign(0.045) TCGA-DK-A1A6-06 12 113705698 113705698 C T TPCN1 Silent p.L227L 0.26 TCGA-DK-A1A6-06 12 12022825 12022825 G A ETV6 Missense_Mutation p.D311N 0.52 tolerated(0.11) benign(0.091) TCGA-DK-A1A6-06 12 12022873 12022873 G C ETV6 Missense_Mutation p.E327Q 0.56 tolerated(0.16) benign(0.012) TCGA-DK-A1A6-06 12 121442238 121442238 G A C12orf43 Silent p.S169S 0.20 TCGA-DK-A1A6-06 12 124242672 124242672 C T ATP6V0A2 3'UTR 0.55 TCGA-DK-A1A6-06 12 124242678 124242678 C T ATP6V0A2 3'UTR 0.56 TCGA-DK-A1A6-06 12 125461982 125461982 C T DHX37 Missense_Mutation p.V265M 0.21 deleterious(0) probably_damaging(0.985) TCGA-DK-A1A6-06 12 132203998 132203998 G C SFSWAP Splice_Site p.X174_splice 0.47 TCGA-DK-A1A6-06 12 132502160 132502160 C T EP400 Missense_Mutation p.P1335L 0.44 unknown(0) TCGA-DK-A1A6-06 12 133218793 133218793 C T POLE Missense_Mutation p.E1715K 0.48 tolerated(0.1) possibly_damaging(0.507) TCGA-DK-A1A6-06 12 133219161 133219161 C G POLE Missense_Mutation p.G1628A 0.47 tolerated(0.54) benign(0.098) TCGA-DK-A1A6-06 12 18242233 18242233 G T RERGL 5'UTR 0.48 TCGA-DK-A1A6-06 12 51757940 51757940 C T GALNT6 Silent p.E338E 0.23 TCGA-DK-A1A6-06 12 55688992 55688992 C G OR6C6 Missense_Mutation p.E9Q 0.58 tolerated_low_confidence(0.11) benign(0.009) TCGA-DK-A1A6-06 12 57921371 57921371 C G MBD6 Missense_Mutation p.L722V 0.15 tolerated_low_confidence(0.21) unknown(0) TCGA-DK-A1A6-06 12 62929388 62929388 C T MON2 Missense_Mutation p.S600L 0.10 deleterious(0.01) benign(0.085) TCGA-DK-A1A6-06 12 83290111 83290111 C T TMTC2 Missense_Mutation p.T390M 0.13 deleterious(0.01) possibly_damaging(0.696) TCGA-DK-A1A6-06 12 93258690 93258690 T C EEA1 Missense_Mutation p.H64R 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A6-06 12 97051735 97051735 C G C12orf55 Missense_Mutation p.L1726V 0.35 deleterious(0) possibly_damaging(0.879) TCGA-DK-A1A6-06 12 97051869 97051869 C T C12orf55 Silent p.F1770F 0.24 TCGA-DK-A1A6-06 13 29008208 29008208 G C FLT1 Silent p.L221L 0.08 TCGA-DK-A1A6-06 13 39425843 39425843 G A FREM2 Missense_Mutation p.E2255K 0.30 tolerated(0.15) benign(0.24) TCGA-DK-A1A6-06 13 39425946 39425946 G C FREM2 Missense_Mutation p.R2289T 0.32 tolerated(0.08) probably_damaging(0.966) TCGA-DK-A1A6-06 13 41791298 41791298 C G MTRF1 Missense_Mutation p.E431Q 0.25 deleterious(0.04) possibly_damaging(0.767) TCGA-DK-A1A6-06 14 23793526 23793526 C T PABPN1 Intron 0.17 TCGA-DK-A1A6-06 14 42368155 42368155 G A LRFN5 Missense_Mutation p.E712K 0.43 tolerated_low_confidence(0.3) benign(0) TCGA-DK-A1A6-06 14 52735275 52735275 C T PTGDR Missense_Mutation p.A248V 0.24 tolerated(0.06) possibly_damaging(0.629) TCGA-DK-A1A6-06 14 53342019 53342019 G C FERMT2 Missense_Mutation p.D340E 0.40 tolerated(0.84) benign(0.004) TCGA-DK-A1A6-06 14 53342072 53342072 G C FERMT2 Missense_Mutation p.H323D 0.32 deleterious(0) probably_damaging(0.994) TCGA-DK-A1A6-06 14 55457948 55457948 G C WDHD1 Missense_Mutation p.L442V 0.30 deleterious(0) probably_damaging(0.968) TCGA-DK-A1A6-06 14 74428598 74428598 C G COQ6 Missense_Mutation p.P457A 0.35 tolerated(0.1) benign(0.066) TCGA-DK-A1A6-06 14 75017934 75017934 C T LTBP2 Missense_Mutation p.V507M 0.38 deleterious(0.01) possibly_damaging(0.862) TCGA-DK-A1A6-06 14 77492772 77492772 G A IRF2BPL Missense_Mutation p.S455L 0.58 tolerated(0.06) unknown(0) TCGA-DK-A1A6-06 14 88938710 88938710 G A PTPN21 Nonsense_Mutation p.R917* 0.15 TCGA-DK-A1A6-06 14 93760396 93760396 A G BTBD7 Missense_Mutation p.Y324H 0.28 deleterious(0.02) possibly_damaging(0.864) TCGA-DK-A1A6-06 15 22383192 22383192 C T OR4N4 Silent p.C240C 0.11 TCGA-DK-A1A6-06 15 25351673 25351673 G A SNORD116-29 RNA 0.29 TCGA-DK-A1A6-06 15 40703469 40703469 G A IVD Missense_Mutation p.G159D 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A1A6-06 15 43044889 43044889 G A TTBK2 Missense_Mutation p.S852L 0.43 deleterious_low_confidence(0) benign(0.293) TCGA-DK-A1A6-06 15 52672022 52672022 G C MYO5A Nonsense_Mutation p.S699* 0.31 TCGA-DK-A1A6-06 15 55912170 55912170 C T PRTG 3'UTR 0.32 TCGA-DK-A1A6-06 15 84560127 84560127 C A ADAMTSL3 Missense_Mutation p.P420T 0.18 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A6-06 15 84611709 84611709 C T ADAMTSL3 Silent p.L789L 0.16 TCGA-DK-A1A6-06 15 86940646 86940646 C A AGBL1 Missense_Mutation p.S762R 0.19 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A6-06 16 20994088 20994088 T C DNAH3 Missense_Mutation p.N2605S 0.22 tolerated(0.41) benign(0.14) TCGA-DK-A1A6-06 16 28925598 28925598 G A RABEP2 Nonsense_Mutation p.Q285* 0.36 TCGA-DK-A1A6-06 16 30004529 30004529 C T HIRIP3 Silent p.%3D 0.29 TCGA-DK-A1A6-06 16 30410392 30410393 - C ZNF48 Frame_Shift_Ins p.L609Pfs*61 0.13 TCGA-DK-A1A6-06 16 3073334 3073334 C G HCFC1R1 Missense_Mutation p.E61Q 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DK-A1A6-06 16 3367835 3367835 C T ZNF75A Missense_Mutation p.S286L 0.40 deleterious(0.02) benign(0.325) TCGA-DK-A1A6-06 16 4802759 4802759 T C ZNF500 Missense_Mutation p.K354R 0.39 tolerated(0.29) benign(0.017) TCGA-DK-A1A6-06 16 56703818 56703818 G A MT1H Missense_Mutation p.E8K 0.28 tolerated(0.15) unknown(0) TCGA-DK-A1A6-06 16 58051329 58051329 A T USB1 Missense_Mutation p.T199S 0.16 tolerated(0.71) benign(0.002) TCGA-DK-A1A6-06 16 58537830 58537830 C T NDRG4 Intron 0.36 TCGA-DK-A1A6-06 16 58537846 58537846 C G NDRG4 Intron 0.44 TCGA-DK-A1A6-06 16 58538305 58538305 C G NDRG4 Silent p.P149P 0.34 TCGA-DK-A1A6-06 16 67574554 67574554 G C FAM65A Missense_Mutation p.D270H 0.41 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A6-06 16 68266170 68266170 C G ESRP2 Missense_Mutation p.E326Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A6-06 16 68335260 68335260 C G SLC7A6OS Missense_Mutation p.R283T 0.36 deleterious(0) possibly_damaging(0.597) TCGA-DK-A1A6-06 16 81241228 81241228 A T PKD1L2 Missense_Mutation p.M258K 0.46 tolerated(0.07) benign(0.029) TCGA-DK-A1A6-06 17 16526289 16526289 C T ZNF624 Silent p.V637V 0.33 TCGA-DK-A1A6-06 17 16526354 16526354 C T ZNF624 Missense_Mutation p.D616N 0.53 deleterious(0.01) possibly_damaging(0.653) TCGA-DK-A1A6-06 17 16526391 16526391 C G ZNF624 Missense_Mutation p.Q603H 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A1A6-06 17 16526600 16526600 C T ZNF624 Missense_Mutation p.G534R 0.39 deleterious(0.01) probably_damaging(1) TCGA-DK-A1A6-06 17 16526725 16526725 C T ZNF624 Missense_Mutation p.R492K 0.43 tolerated(0.13) probably_damaging(0.989) TCGA-DK-A1A6-06 17 16526782 16526782 C G ZNF624 Missense_Mutation p.R473T 0.36 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A1A6-06 17 16526838 16526838 C G ZNF624 Missense_Mutation p.K454N 0.40 tolerated(0.17) probably_damaging(0.998) TCGA-DK-A1A6-06 17 16526858 16526858 C T ZNF624 Missense_Mutation p.E448K 0.45 tolerated(0.14) probably_damaging(0.988) TCGA-DK-A1A6-06 17 16526922 16526922 C T ZNF624 Silent p.R426R 0.40 TCGA-DK-A1A6-06 17 16526945 16526945 C G ZNF624 Missense_Mutation p.D419H 0.36 deleterious(0.03) benign(0.207) TCGA-DK-A1A6-06 17 16526963 16526963 C T ZNF624 Missense_Mutation p.E413K 0.33 deleterious(0.05) benign(0.17) TCGA-DK-A1A6-06 17 16527313 16527313 C G ZNF624 Missense_Mutation p.R296T 0.51 deleterious(0) benign(0.093) TCGA-DK-A1A6-06 17 16527443 16527444 - T ZNF624 Frame_Shift_Ins p.G253Rfs*19 0.38 TCGA-DK-A1A6-06 17 16527465 16527465 C G ZNF624 Missense_Mutation p.K245N 0.51 deleterious(0.04) benign(0.444) TCGA-DK-A1A6-06 17 16527501 16527501 C G ZNF624 Missense_Mutation p.E233D 0.51 tolerated(0.25) benign(0.002) TCGA-DK-A1A6-06 17 16527670 16527670 C G ZNF624 Missense_Mutation p.R177T 0.37 tolerated(0.26) benign(0.046) TCGA-DK-A1A6-06 17 16527693 16527693 C T ZNF624 Nonsense_Mutation p.W169* 0.39 TCGA-DK-A1A6-06 17 16527709 16527709 C T ZNF624 Missense_Mutation p.R164K 0.38 tolerated(0.92) benign(0) TCGA-DK-A1A6-06 17 16527767 16527767 C T ZNF624 Missense_Mutation p.D145N 0.42 tolerated(0.25) benign(0.001) TCGA-DK-A1A6-06 17 18022918 18022918 C A MYO15A Missense_Mutation p.S268R 0.71 benign(0.344) TCGA-DK-A1A6-06 17 37880261 37880261 G A ERBB2 Missense_Mutation p.D769N 0.91 deleterious(0.03) probably_damaging(1) TCGA-DK-A1A6-06 17 39261731 39261731 G A KRTAP4-9 Missense_Mutation p.E31K 0.92 tolerated(0.06) unknown(0) TCGA-DK-A1A6-06 17 56620303 56620303 A T C17orf47 Silent p.P415P 0.16 TCGA-DK-A1A6-06 17 72767986 72767986 G A NAT9 Silent p.S167S 0.32 TCGA-DK-A1A6-06 17 72888659 72888659 G A FADS6 Silent p.F116F 0.18 TCGA-DK-A1A6-06 17 74077519 74077519 C T EXOC7 3'Flank 0.15 TCGA-DK-A1A6-06 17 7579315 7579316 - C TP53 Frame_Shift_Ins p.C124Wfs*25 0.41 TCGA-DK-A1A6-06 17 76047083 76047083 C T TNRC6C Missense_Mutation p.T647I 0.29 deleterious(0.04) benign(0.015) TCGA-DK-A1A6-06 17 77922741 77922741 C T TBC1D16 Missense_Mutation p.D491N 0.33 deleterious(0) possibly_damaging(0.72) TCGA-DK-A1A6-06 17 78058702 78058702 C G CCDC40 Missense_Mutation p.S717C 0.36 deleterious(0) possibly_damaging(0.496) TCGA-DK-A1A6-06 17 78059829 78059829 G C CCDC40 Missense_Mutation p.E755Q 0.36 tolerated(0.05) benign(0.066) TCGA-DK-A1A6-06 18 18622100 18622100 G C ROCK1 Nonsense_Mutation p.S306* 0.17 TCGA-DK-A1A6-06 18 21746618 21746618 C G OSBPL1A Missense_Mutation p.D862H 0.47 tolerated(0.06) benign(0.264) TCGA-DK-A1A6-06 18 2892205 2892205 G A EMILIN2 Missense_Mutation p.G694R 0.41 deleterious(0.02) possibly_damaging(0.851) TCGA-DK-A1A6-06 18 47810445 47810445 C T CXXC1 Missense_Mutation p.R415H 0.06 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A6-06 18 55024415 55024415 G A ST8SIA3 Missense_Mutation p.A192T 0.37 probably_damaging(0.995) TCGA-DK-A1A6-06 19 11591495 11591495 C T ELAVL3 5'UTR 0.50 TCGA-DK-A1A6-06 19 11651903 11651903 T C CNN1 Missense_Mutation p.Y26H 0.40 deleterious(0.02) benign(0.179) TCGA-DK-A1A6-06 19 12991823 12991823 C T DNASE2 Missense_Mutation p.R77Q 0.29 tolerated(0.19) benign(0.408) TCGA-DK-A1A6-06 19 17166705 17166705 G A HAUS8 Silent p.S251S 0.29 TCGA-DK-A1A6-06 19 17953857 17953857 C T JAK3 Missense_Mutation p.G182E 0.41 tolerated(1) benign(0) TCGA-DK-A1A6-06 19 19420983 19420983 C A SUGP1 Missense_Mutation p.C78F 0.21 deleterious(0.03) benign(0.018) TCGA-DK-A1A6-06 19 2222099 2222099 C T DOT1L Silent p.T977T 0.46 TCGA-DK-A1A6-06 19 22785482 22785482 G - AC011467.1 5'Flank 0.31 TCGA-DK-A1A6-06 19 22940978 22940978 G A ZNF99 Missense_Mutation p.S578L 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-DK-A1A6-06 19 22941120 22941120 G A ZNF99 Missense_Mutation p.H531Y 0.32 deleterious(0) possibly_damaging(0.848) TCGA-DK-A1A6-06 19 36347949 36347949 G T KIRREL2 5'UTR 0.50 TCGA-DK-A1A6-06 19 43376148 43376148 C T PSG1 Silent p.E160E 0.15 TCGA-DK-A1A6-06 19 46032290 46032290 C T OPA3 3'UTR 0.37 TCGA-DK-A1A6-06 19 46338423 46338423 G C SYMPK Missense_Mutation p.P436A 0.38 deleterious(0.01) probably_damaging(0.917) TCGA-DK-A1A6-06 19 46393930 46393930 C G MYPOP Missense_Mutation p.R384T 0.17 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-DK-A1A6-06 19 46522875 46522875 G A PGLYRP1 Silent p.Y106Y 0.20 TCGA-DK-A1A6-06 19 47178369 47178369 T C PRKD2 Missense_Mutation p.D782G 0.65 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A6-06 19 4859618 4859618 T C PLIN3 Missense_Mutation p.Q111R 0.50 deleterious(0.01) possibly_damaging(0.836) TCGA-DK-A1A6-06 19 51918516 51918516 C G SIGLEC10 Missense_Mutation p.V417L 0.20 tolerated(0.36) benign(0.004) TCGA-DK-A1A6-06 19 56244156 56244156 C T NLRP9 Silent p.V347V 0.79 TCGA-DK-A1A6-06 19 56244288 56244288 C G NLRP9 Missense_Mutation p.K303N 0.70 tolerated(0.16) possibly_damaging(0.751) TCGA-DK-A1A6-06 19 6686860 6686860 C T C3 Missense_Mutation p.M1181I 0.35 tolerated(0.19) benign(0) TCGA-DK-A1A6-06 1 100349714 100349714 G C AGL Missense_Mutation p.E783Q 0.34 tolerated(0.13) benign(0.082) TCGA-DK-A1A6-06 1 100613733 100613733 G C TRMT13 Missense_Mutation p.M367I 0.30 deleterious(0.01) possibly_damaging(0.452) TCGA-DK-A1A6-06 1 104160108 104160108 C T AMY2A Nonsense_Mutation p.Q16* 0.13 TCGA-DK-A1A6-06 1 10720282 10720282 G A CASZ1 Silent p.L273L 0.38 TCGA-DK-A1A6-06 1 111966266 111966266 G A OVGP1 Silent p.L128L 0.42 TCGA-DK-A1A6-06 1 113000108 113000108 G C CTTNBP2NL 3'UTR 0.28 TCGA-DK-A1A6-06 1 120437228 120437228 G C ADAM30 Missense_Mutation p.H578D 0.40 deleterious(0) probably_damaging(0.994) TCGA-DK-A1A6-06 1 1396160 1396160 C G ATAD3C Silent p.P281P 0.44 TCGA-DK-A1A6-06 1 145440778 145440779 - A TXNIP Frame_Shift_Ins p.T327Nfs*14 0.12 TCGA-DK-A1A6-06 1 145771670 145771670 C T GPR89A Missense_Mutation p.E324K 0.23 tolerated(0.08) benign(0.141) TCGA-DK-A1A6-06 1 145771715 145771715 C G GPR89A Missense_Mutation p.V309L 0.17 tolerated(0.15) benign(0.044) TCGA-DK-A1A6-06 1 150795814 150795814 T C ARNT Missense_Mutation p.K417R 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A1A6-06 1 151022921 151022921 G A C1orf56 Missense_Mutation p.R338K 0.29 tolerated(0.42) possibly_damaging(0.567) TCGA-DK-A1A6-06 1 152276031 152276031 C T FLG Silent p.S3777S 0.26 TCGA-DK-A1A6-06 1 152277865 152277865 C T FLG Missense_Mutation p.R3166H 0.24 unknown(0) TCGA-DK-A1A6-06 1 153920573 153920573 G A CRTC2 3'UTR 0.53 TCGA-DK-A1A6-06 1 153920995 153920995 G A CRTC2 Silent p.F600F 0.31 TCGA-DK-A1A6-06 1 156376674 156376674 C T C1orf61 Intron 0.36 TCGA-DK-A1A6-06 1 156823546 156823546 C G INSRR Missense_Mutation p.R212T 0.33 deleterious(0.04) benign(0.213) TCGA-DK-A1A6-06 1 159683510 159683510 G A CRP Silent p.F160F 0.20 TCGA-DK-A1A6-06 1 160648841 160648841 C T CD48 3'UTR 0.11 TCGA-DK-A1A6-06 1 169394120 169394120 C T CCDC181 Missense_Mutation p.E16K 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A6-06 1 169511937 169511937 G C F5 Silent p.A797A 0.33 TCGA-DK-A1A6-06 1 183096378 183096378 G A LAMC1 Missense_Mutation p.E988K 0.15 tolerated(1) probably_damaging(0.999) TCGA-DK-A1A6-06 1 19479909 19479909 G A UBR4 Missense_Mutation p.R2240C 0.07 probably_damaging(0.997) TCGA-DK-A1A6-06 1 205042279 205042279 C T CNTN2 Silent p.D976D 0.33 TCGA-DK-A1A6-06 1 220364531 220364531 G A RAB3GAP2 Nonsense_Mutation p.Q456* 0.36 TCGA-DK-A1A6-06 1 233489599 233489599 C T MLK4 Missense_Mutation p.R345W 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A1A6-06 1 237813229 237813229 C T RYR2 Missense_Mutation p.T2522I 0.29 benign(0.391) TCGA-DK-A1A6-06 1 238053778 238053778 G A ZP4 Missense_Mutation p.P53L 0.22 tolerated(0.69) benign(0.008) TCGA-DK-A1A6-06 1 244582145 244582145 G C ADSS Missense_Mutation p.Q288E 0.25 tolerated(0.08) benign(0.137) TCGA-DK-A1A6-06 1 26149579 26149579 T C MTFR1L 5'UTR 0.48 TCGA-DK-A1A6-06 1 26449095 26449096 - TAA PDIK1L 3'UTR 0.38 TCGA-DK-A1A6-06 1 26772806 26772806 G A DHDDS Splice_Site p.X108_splice 0.18 TCGA-DK-A1A6-06 1 29438879 29438879 G C EPB41 Splice_Site p.X806_splice 0.18 TCGA-DK-A1A6-06 1 35656103 35656103 G A SFPQ Nonsense_Mutation p.Q471* 0.35 TCGA-DK-A1A6-06 1 35915495 35915495 C G KIAA0319L Missense_Mutation p.D776H 0.30 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A6-06 1 43394663 43394663 G A SLC2A1 Silent p.L338L 0.26 TCGA-DK-A1A6-06 1 50642818 50642818 C T ELAVL4 Missense_Mutation p.A120V 0.26 deleterious(0) probably_damaging(0.99) TCGA-DK-A1A6-06 1 51875267 51875267 T G EPS15 Missense_Mutation p.K405N 0.26 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A6-06 1 55277826 55277826 G C C1orf177 Silent p.R242R 0.26 TCGA-DK-A1A6-06 20 1638344 1638344 G A SIRPG Missense_Mutation p.S6F 0.26 deleterious(0) benign(0.03) TCGA-DK-A1A6-06 20 19677543 19677543 G C SLC24A3 Missense_Mutation p.V532L 0.45 deleterious(0) benign(0.436) TCGA-DK-A1A6-06 20 30408244 30408244 C T MYLK2 Missense_Mutation p.P123L 0.13 deleterious_low_confidence(0.02) benign(0.008) TCGA-DK-A1A6-06 20 30436315 30436315 G A FOXS1 5'Flank 0.25 TCGA-DK-A1A6-06 20 33575921 33575921 C G MYH7B Missense_Mutation p.I523M 0.58 probably_damaging(0.928) TCGA-DK-A1A6-06 20 35731106 35731106 C T MROH8 Missense_Mutation p.G1065D 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.656) TCGA-DK-A1A6-06 20 39797452 39797452 G A PLCG1 Missense_Mutation p.E809K 0.58 deleterious(0) possibly_damaging(0.689) TCGA-DK-A1A6-06 20 40790057 40790057 C A PTPRT Missense_Mutation p.D873Y 0.68 deleterious(0) possibly_damaging(0.898) TCGA-DK-A1A6-06 20 45633580 45633580 G C EYA2 Splice_Site p.X52_splice 0.63 TCGA-DK-A1A6-06 20 61511837 61511837 C G DIDO1 Missense_Mutation p.R1824T 0.66 probably_damaging(0.997) TCGA-DK-A1A6-06 20 8678319 8678319 G C PLCB1 Silent p.V352V 0.35 TCGA-DK-A1A6-06 21 11039331 11039331 C A BAGE2 RNA 0.05 TCGA-DK-A1A6-06 21 11058280 11058280 C A BAGE2 RNA 0.04 TCGA-DK-A1A6-06 21 19715873 19715873 C T TMPRSS15 Missense_Mutation p.D460N 0.33 tolerated(0.78) benign(0.005) TCGA-DK-A1A6-06 21 37429482 37429482 C G SETD4 Missense_Mutation p.E32Q 0.35 tolerated(0.3) benign(0.041) TCGA-DK-A1A6-06 21 40578084 40578084 G C BRWD1 Missense_Mutation p.F1438L 0.38 tolerated(0.23) benign(0.444) TCGA-DK-A1A6-06 21 47531978 47531978 C G COL6A2 Silent p.L67L 0.45 TCGA-DK-A1A6-06 22 17072001 17072001 C T CCT8L2 Silent p.V480V 0.17 TCGA-DK-A1A6-06 22 19870908 19870908 C T TXNRD2 Silent p.L342L 0.42 TCGA-DK-A1A6-06 22 20100675 20100675 G A TRMT2A Silent p.L505L 0.17 TCGA-DK-A1A6-06 22 33780253 33780253 C A LARGE Missense_Mutation p.M310I 0.37 tolerated(0.84) benign(0.001) TCGA-DK-A1A6-06 22 38087186 38087186 C G NOL12 Missense_Mutation p.S162C 0.07 tolerated(0.23) benign(0.124) TCGA-DK-A1A6-06 22 40805755 40805755 G T SGSM3 Missense_Mutation p.D748Y 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A1A6-06 2 108910720 108910720 G C SULT1C2 Missense_Mutation p.E63Q 0.53 tolerated(0.49) benign(0.023) TCGA-DK-A1A6-06 2 109088444 109088444 C G GCC2 Missense_Mutation p.Q887E 0.57 tolerated(0.24) benign(0.097) TCGA-DK-A1A6-06 2 120204401 120204401 G A SCTR Silent p.F358F 0.09 TCGA-DK-A1A6-06 2 163066483 163066483 G T FAP Missense_Mutation p.S342R 0.07 deleterious(0.02) possibly_damaging(0.889) TCGA-DK-A1A6-06 2 165365357 165365357 C T GRB14 Silent p.P274P 0.07 TCGA-DK-A1A6-06 2 168103464 168103464 G A XIRP2 Silent p.Q1854Q 0.46 TCGA-DK-A1A6-06 2 179433265 179433265 C T TTN Missense_Mutation p.G25865D 0.09 TCGA-DK-A1A6-06 2 1926269 1926269 G T MYT1L Missense_Mutation p.F424L 0.16 tolerated(0.21) probably_damaging(0.997) TCGA-DK-A1A6-06 2 207171818 207171818 G C ZDBF2 Missense_Mutation p.E856Q 0.08 deleterious(0.02) possibly_damaging(0.775) TCGA-DK-A1A6-06 2 211473145 211473145 G C CPS1 Missense_Mutation p.K757N 0.40 deleterious(0.01) benign(0.134) TCGA-DK-A1A6-06 2 21230048 21230048 T C APOB Missense_Mutation p.D3231G 0.24 probably_damaging(0.963) TCGA-DK-A1A6-06 2 231405661 231405661 C A SP100 Missense_Mutation p.H761N 0.38 tolerated(0.26) benign(0.216) TCGA-DK-A1A6-06 2 24338430 24338430 G T PFN4 3'UTR 0.09 TCGA-DK-A1A6-06 2 55476578 55476578 C T MTIF2 Missense_Mutation p.E312K 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A1A6-06 2 55825620 55825620 C G SMEK2 Missense_Mutation p.E285Q 0.54 deleterious(0.01) probably_damaging(0.985) TCGA-DK-A1A6-06 2 63712069 63712069 G A WDPCP Silent p.D102D 0.22 TCGA-DK-A1A6-06 2 89156874 89156874 C G IGKC Nonstop_Mutation p.*108Yext*59 0.48 TCGA-DK-A1A6-06 2 99938659 99938659 C G TXNDC9 Missense_Mutation p.D108H 0.10 deleterious(0) probably_damaging(0.976) TCGA-DK-A1A6-06 3 102195877 102195877 C T ZPLD1 Missense_Mutation p.S371L 0.33 tolerated(0.06) possibly_damaging(0.7) TCGA-DK-A1A6-06 3 10354378 10354378 G A SEC13 Silent p.H67H 0.32 TCGA-DK-A1A6-06 3 111719691 111719691 A G TAGLN3 Missense_Mutation p.M85V 0.15 tolerated(0.08) benign(0.018) TCGA-DK-A1A6-06 3 113379606 113379606 G A KIAA2018 Missense_Mutation p.S308L 0.39 benign(0.008) TCGA-DK-A1A6-06 3 124632002 124632002 C G MUC13 Silent p.A389A 0.39 TCGA-DK-A1A6-06 3 128126998 128126998 G A EEFSEC Missense_Mutation p.E563K 0.34 tolerated(0.31) benign(0.005) TCGA-DK-A1A6-06 3 142539827 142539827 G C PCOLCE2 Missense_Mutation p.S337W 0.38 deleterious(0) probably_damaging(0.996) TCGA-DK-A1A6-06 3 155546144 155546144 G A SLC33A1 Missense_Mutation p.S502L 0.40 tolerated(0.27) benign(0.009) TCGA-DK-A1A6-06 3 178928079 178928079 G C PIK3CA Missense_Mutation p.E453Q 0.36 tolerated(0.07) probably_damaging(0.928) TCGA-DK-A1A6-06 3 182759419 182759419 T C MCCC1 Silent p.P401P 0.27 TCGA-DK-A1A6-06 3 184041700 184041700 G C EIF4G1 Missense_Mutation p.E810Q 0.36 deleterious(0) possibly_damaging(0.836) TCGA-DK-A1A6-06 3 184299313 184299313 G T EPHB3 Missense_Mutation p.R967L 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A1A6-06 3 185146688 185146688 G A MAP3K13 Missense_Mutation p.G107R 0.30 tolerated(0.06) benign(0.021) TCGA-DK-A1A6-06 3 49169709 49169709 C G LAMB2 Missense_Mutation p.E127Q 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A1A6-06 3 49201104 49201104 C G CCDC71 Missense_Mutation p.E180Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A6-06 3 52019433 52019433 C G ACY1 Silent p.L72L 0.30 TCGA-DK-A1A6-06 3 98217355 98217355 A T OR5K2 Missense_Mutation p.L277F 0.18 tolerated(1) benign(0.005) TCGA-DK-A1A6-06 4 113352240 113352240 C G ALPK1 Missense_Mutation p.Q513E 0.16 tolerated(0.32) benign(0.002) TCGA-DK-A1A6-06 4 120181753 120181753 C G USP53 Missense_Mutation p.S256C 0.16 deleterious(0) probably_damaging(0.994) TCGA-DK-A1A6-06 4 134072435 134072435 C - PCDH10 Frame_Shift_Del p.F380Lfs*3 0.20 TCGA-DK-A1A6-06 4 138442158 138442158 A C PCDH18 3'UTR 0.20 TCGA-DK-A1A6-06 4 146063358 146063358 A G OTUD4 Silent p.F539F 0.32 TCGA-DK-A1A6-06 4 15018869 15018869 G T CPEB2 Missense_Mutation p.D698Y 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A1A6-06 4 169214939 169214939 T A DDX60 Missense_Mutation p.Q294L 0.08 deleterious(0.02) benign(0.02) TCGA-DK-A1A6-06 4 178272654 178272665 TAAGCCCTCTTC - NEIL3 In_Frame_Del p.P332_K335del 0.15 TCGA-DK-A1A6-06 4 186380089 186380089 T C CCDC110 Missense_Mutation p.H551R 0.25 tolerated(0.17) possibly_damaging(0.454) TCGA-DK-A1A6-06 4 2252408 2252408 C G MXD4 Missense_Mutation p.E165Q 0.38 tolerated(0.14) possibly_damaging(0.808) TCGA-DK-A1A6-06 4 2252892 2252892 C G MXD4 Missense_Mutation p.E131Q 0.44 deleterious(0.02) probably_damaging(0.917) TCGA-DK-A1A6-06 4 25351119 25351119 C T ZCCHC4 Silent p.A255A 0.41 TCGA-DK-A1A6-06 4 42403228 42403228 C T SHISA3 Silent p.S159S 0.41 TCGA-DK-A1A6-06 4 437033 437033 T G ZNF721 Missense_Mutation p.K408T 0.14 deleterious(0.01) benign(0.043) TCGA-DK-A1A6-06 4 46043250 46043250 C A GABRG1 Nonsense_Mutation p.G385* 0.09 TCGA-DK-A1A6-06 4 47427997 47427997 C T GABRB1 Missense_Mutation p.L463F 0.14 tolerated(0.61) benign(0.019) TCGA-DK-A1A6-06 4 8284261 8284261 G A HTRA3 Silent p.L161L 0.37 TCGA-DK-A1A6-06 4 87662917 87662917 G A PTPN13 Missense_Mutation p.R812H 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A1A6-06 5 100222034 100222034 G A ST8SIA4 Intron 0.45 TCGA-DK-A1A6-06 5 130766636 130766636 C A CTC-432M15.3 Nonsense_Mutation p.E1511* 0.16 TCGA-DK-A1A6-06 5 137488324 137488324 C G BRD8 Missense_Mutation p.W901C 0.46 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-DK-A1A6-06 5 13913870 13913870 G A DNAH5 Silent p.D506D 0.51 TCGA-DK-A1A6-06 5 140024595 140024595 C G TMCO6 Nonsense_Mutation p.S465* 0.53 TCGA-DK-A1A6-06 5 140561998 140561998 C T PCDHB16 5'UTR 0.50 TCGA-DK-A1A6-06 5 141233792 141233792 C G PCDH1 Missense_Mutation p.D1177H 0.27 tolerated(0.06) possibly_damaging(0.712) TCGA-DK-A1A6-06 5 156946911 156946911 G C ADAM19 Missense_Mutation p.S179C 0.21 deleterious(0.04) possibly_damaging(0.669) TCGA-DK-A1A6-06 5 169507184 169507184 G A DOCK2 Silent p.E1728E 0.17 TCGA-DK-A1A6-06 5 173383171 173383171 C T CPEB4 3'UTR 0.46 TCGA-DK-A1A6-06 5 179666936 179666936 C A MAPK9 Nonsense_Mutation p.E350* 0.22 TCGA-DK-A1A6-06 5 32074145 32074145 G C PDZD2 Missense_Mutation p.R978T 0.27 tolerated(0.2) benign(0.008) TCGA-DK-A1A6-06 5 44815408 44815408 G A MRPS30 3'UTR 0.38 TCGA-DK-A1A6-06 5 76736658 76736658 G C WDR41 Missense_Mutation p.H288D 0.27 tolerated(0.08) benign(0.003) TCGA-DK-A1A6-06 6 10410427 10410427 G A TFAP2A Nonsense_Mutation p.Q63* 0.38 TCGA-DK-A1A6-06 6 112375518 112375518 G T WISP3 Silent p.R4R 0.38 TCGA-DK-A1A6-06 6 132874467 132874467 G C TAAR8 Missense_Mutation p.M212I 0.33 deleterious(0.02) benign(0.075) TCGA-DK-A1A6-06 6 148865205 148865205 G C SASH1 Missense_Mutation p.E867Q 0.56 tolerated_low_confidence(0.3) benign(0.004) TCGA-DK-A1A6-06 6 150289814 150289814 C G ULBP1 Missense_Mutation p.Q53E 0.53 deleterious(0.01) possibly_damaging(0.906) TCGA-DK-A1A6-06 6 152768727 152768727 C T SYNE1 Missense_Mutation p.E1179K 0.35 benign(0.317) TCGA-DK-A1A6-06 6 153043097 153043097 G C MYCT1 Silent p.L139L 0.51 TCGA-DK-A1A6-06 6 161132128 161132128 G T PLG Missense_Mutation p.K104N 0.26 tolerated(0.27) possibly_damaging(0.721) TCGA-DK-A1A6-06 6 27776084 27776084 C T HIST1H2AI Missense_Mutation p.R33C 0.19 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-DK-A1A6-06 6 29408455 29408455 C A OR10C1 Silent p.L221L 0.16 TCGA-DK-A1A6-06 6 32407746 32407746 C T HLA-DRA Missense_Mutation p.P7S 0.44 deleterious(0.04) benign(0.005) TCGA-DK-A1A6-06 6 33257970 33257970 G A PFDN6 Silent p.S28S 0.24 TCGA-DK-A1A6-06 6 33632979 33632979 G C ITPR3 Missense_Mutation p.Q466H 0.11 tolerated(0.09) possibly_damaging(0.823) TCGA-DK-A1A6-06 6 34208621 34208621 G C HMGA1 Missense_Mutation p.E22Q 0.16 tolerated(0.27) benign(0.403) TCGA-DK-A1A6-06 6 35423591 35423591 C T FANCE Missense_Mutation p.R106W 0.24 tolerated(0.22) benign(0.002) TCGA-DK-A1A6-06 6 38790801 38790801 G A DNAH8 Silent p.V1020V 0.41 TCGA-DK-A1A6-06 6 42937459 42937459 C G PEX6 Silent p.L438L 0.12 TCGA-DK-A1A6-06 6 56473897 56473897 C G DST Intron 0.41 TCGA-DK-A1A6-06 6 56474031 56474031 C G DST Intron 0.42 TCGA-DK-A1A6-06 6 62688006 62688006 G A KHDRBS2 Missense_Mutation p.H150Y 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A1A6-06 7 121652861 121652861 C G PTPRZ1 Missense_Mutation p.S1254C 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-DK-A1A6-06 7 138853167 138853167 C G TTC26 Intron 0.15 TCGA-DK-A1A6-06 7 158824561 158824561 C T VIPR2 Splice_Site p.X368_splice 0.31 TCGA-DK-A1A6-06 7 16502559 16502559 G A SOSTDC1 Missense_Mutation p.R79C 0.38 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A6-06 7 16745684 16745684 G C BZW2 Splice_Site p.X411_splice 0.24 TCGA-DK-A1A6-06 7 21946221 21946221 C A CDCA7L Missense_Mutation p.D240Y 0.13 deleterious(0.01) possibly_damaging(0.896) TCGA-DK-A1A6-06 7 21951271 21951271 C G CDCA7L Missense_Mutation p.Q89H 0.32 deleterious(0.02) possibly_damaging(0.615) TCGA-DK-A1A6-06 7 24854781 24854781 A G OSBPL3 Missense_Mutation p.I690T 0.14 deleterious(0) possibly_damaging(0.653) TCGA-DK-A1A6-06 7 32623518 32623518 G C AVL9 Nonstop_Mutation p.*649Sext*13 0.31 TCGA-DK-A1A6-06 7 4051844 4051844 G T SDK1 Silent p.G799G 0.34 TCGA-DK-A1A6-06 7 47894544 47894544 G C PKD1L1 Missense_Mutation p.L1599V 0.28 deleterious(0) possibly_damaging(0.8) TCGA-DK-A1A6-06 7 50595941 50595941 C G DDC Missense_Mutation p.G203A 0.25 tolerated(0.41) benign(0.108) TCGA-DK-A1A6-06 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.35 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DK-A1A6-06 7 55991305 55991305 C G MRPS17 Missense_Mutation p.Q61E 0.25 tolerated_low_confidence(0.38) unknown(0) TCGA-DK-A1A6-06 7 70255708 70255708 C G AUTS2 Missense_Mutation p.S1169C 0.18 deleterious(0.05) possibly_damaging(0.85) TCGA-DK-A1A6-06 7 72657661 72657661 C T GTF2IRD2P1 RNA 0.12 TCGA-DK-A1A6-06 7 82546033 82546033 T C PCLO Missense_Mutation p.M3757V 0.26 unknown(0) TCGA-DK-A1A6-06 7 86468800 86468800 C G GRM3 Nonsense_Mutation p.S657* 0.36 TCGA-DK-A1A6-06 7 87537236 87537236 G A DBF4 Missense_Mutation p.E595K 0.37 deleterious(0) benign(0.085) TCGA-DK-A1A6-06 7 87778343 87778343 C T ADAM22 Missense_Mutation p.R513C 0.12 deleterious(0) benign(0.382) TCGA-DK-A1A6-06 7 87913437 87913437 G A STEAP4 Nonsense_Mutation p.R50* 0.38 TCGA-DK-A1A6-06 7 92734156 92734156 T C SAMD9 Missense_Mutation p.K419E 0.41 deleterious(0) probably_damaging(0.989) TCGA-DK-A1A6-06 8 133623595 133623595 G C LRRC6 Missense_Mutation p.S330C 0.44 deleterious(0) possibly_damaging(0.844) TCGA-DK-A1A6-06 8 133844494 133844494 G T PHF20L1 Nonsense_Mutation p.E587* 0.49 TCGA-DK-A1A6-06 8 144671800 144671800 C T EEF1D Missense_Mutation p.G151E 0.36 deleterious(0) possibly_damaging(0.901) TCGA-DK-A1A6-06 8 21840321 21840321 G A XPO7 Silent p.L425L 0.27 TCGA-DK-A1A6-06 8 22035399 22035399 G A BMP1 Silent p.Q255Q 0.22 TCGA-DK-A1A6-06 8 26722121 26722121 G C ADRA1A Missense_Mutation p.I122M 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A1A6-06 8 36644882 36644882 G A KCNU1 Missense_Mutation p.G85E 0.18 deleterious(0.02) probably_damaging(0.935) TCGA-DK-A1A6-06 8 385664 385664 C G FBXO25 Nonsense_Mutation p.S113* 0.17 TCGA-DK-A1A6-06 8 41519393 41519393 C G ANK1 Splice_Site p.X1889_splice 0.12 TCGA-DK-A1A6-06 8 42978110 42978110 C T POMK 3'UTR 0.18 TCGA-DK-A1A6-06 8 48626144 48626144 C A SPIDR Missense_Mutation p.P761Q 0.20 deleterious(0) probably_damaging(0.986) TCGA-DK-A1A6-06 8 48815271 48815271 G C PRKDC Missense_Mutation p.Q1043E 0.17 probably_damaging(0.996) TCGA-DK-A1A6-06 8 64099876 64099876 C G YTHDF3 Missense_Mutation p.S435C 0.17 deleterious(0) possibly_damaging(0.843) TCGA-DK-A1A6-06 8 68931794 68931794 C G PREX2 Nonsense_Mutation p.S75* 0.57 TCGA-DK-A1A6-06 8 72973899 72973899 A G TRPA1 Missense_Mutation p.V302A 0.12 deleterious(0.01) benign(0.422) TCGA-DK-A1A6-06 8 77616680 77616680 A C ZFHX4 Missense_Mutation p.L119F 0.10 possibly_damaging(0.765) TCGA-DK-A1A6-06 9 131346653 131346653 C T SPTAN1 Silent p.L762L 0.54 TCGA-DK-A1A6-06 9 131347041 131347041 C T SPTAN1 Nonsense_Mutation p.Q827* 0.38 TCGA-DK-A1A6-06 9 131388045 131388045 C G SPTAN1 Intron 0.37 TCGA-DK-A1A6-06 9 27169599 27169599 C T TEK Silent p.T200T 0.19 TCGA-DK-A1A6-06 9 37441201 37441201 G C ZBTB5 Missense_Mutation p.P450A 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-DK-A1A6-06 9 65506364 65506364 G C SPATA31A7 Nonsense_Mutation p.S399* 0.34 TCGA-DK-A1A6-06 9 65508173 65508173 C T SPATA31A7 Silent p.R70R 0.40 TCGA-DK-A1A6-06 9 77376977 77376977 G A TRPM6 Missense_Mutation p.A1537V 0.33 tolerated_low_confidence(0.59) benign(0) TCGA-DK-A1A6-06 9 8521491 8521491 T A PTPRD Silent p.P249P 0.16 TCGA-DK-A1A6-06 9 86354580 86354580 A C GKAP1 3'UTR 0.24 TCGA-DK-A1A6-06 9 86571141 86571141 C G C9orf64 Missense_Mutation p.R92T 0.46 deleterious(0.02) benign(0.122) TCGA-DK-A1A6-06 9 99697725 99697725 G A NUTM2G Missense_Mutation p.E277K 0.19 deleterious(0.05) possibly_damaging(0.766) TCGA-DK-A1A6-06 X 100086569 100086569 C A CSTF2 Silent p.R319R 0.74 TCGA-DK-A1A6-06 X 102347981 102347981 A T NXF3 5'UTR 0.72 TCGA-DK-A1A6-06 X 123516590 123516590 A G TENM1 Missense_Mutation p.L2457S 0.74 tolerated(0.43) benign(0.002) TCGA-DK-A1A6-06 X 151092370 151092370 C T MAGEA4 Silent p.F78F 0.55 TCGA-DK-A1A6-06 X 153880627 153880627 G A CTAG2 Missense_Mutation p.P183L 0.50 deleterious_low_confidence(0) unknown(0) TCGA-DK-A1A6-06 X 34148659 34148659 G A FAM47A Silent p.Y579Y 0.78 TCGA-DK-A1A6-06 X 38147249 38147249 C G RPGR Missense_Mutation p.E540Q 0.72 probably_damaging(0.962) TCGA-DK-A1A6-06 X 44950105 44950111 ATTAAGT - KDM6A Splice_Site p.X1292_splice 0.61 TCGA-DK-A1A6-06 X 53578103 53578103 C T HUWE1 Silent p.Q3048Q 0.72 TCGA-DK-A1A6-06 X 53578136 53578136 C G HUWE1 Missense_Mutation p.Q3037H 0.65 possibly_damaging(0.522) TCGA-DK-A1A6-06 X 54957054 54957054 C T TRO Silent p.F1299F 0.75 TCGA-DK-A1A6-06 X 56590882 56590882 G C UBQLN2 Missense_Mutation p.Q192H 0.67 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A6-06 X 73507019 73507019 G A MIR545 RNA 0.90 TCGA-DK-A1A7-01 10 102684688 102684688 G A FAM178A Missense_Mutation p.A644T 0.69 tolerated(0.23) benign(0.318) TCGA-DK-A1A7-01 10 104679190 104679190 C T CNNM2 Missense_Mutation p.S318L 0.62 deleterious(0) probably_damaging(0.983) TCGA-DK-A1A7-01 10 120817659 120817659 G A EIF3A Nonsense_Mutation p.Q596* 0.24 TCGA-DK-A1A7-01 10 128192613 128192613 C T C10orf90 Missense_Mutation p.G386R 0.75 tolerated(0.11) benign(0.173) TCGA-DK-A1A7-01 10 131565073 131565073 C G MGMT Missense_Mutation p.H177D 0.56 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 10 134018389 134018389 C T DPYSL4 Silent p.I558I 0.18 TCGA-DK-A1A7-01 10 135011911 135011911 C T KNDC1 Silent p.C659C 0.44 TCGA-DK-A1A7-01 10 27112231 27112231 T C ABI1 Missense_Mutation p.T41A 0.27 tolerated(1) benign(0.001) TCGA-DK-A1A7-01 10 75406722 75406722 C T SYNPO2L Silent p.Q896Q 0.72 TCGA-DK-A1A7-01 11 102495964 102495964 G C MMP20 Silent p.A29A 0.72 TCGA-DK-A1A7-01 11 126176504 126176504 G A DCPS Missense_Mutation p.V81I 0.68 tolerated(0.31) benign(0.008) TCGA-DK-A1A7-01 11 17115836 17115836 T C PIK3C2A Missense_Mutation p.I1475V 0.69 deleterious(0.02) probably_damaging(0.925) TCGA-DK-A1A7-01 11 18955715 18955715 G A MRGPRX1 Missense_Mutation p.S206F 0.18 deleterious(0.03) possibly_damaging(0.81) TCGA-DK-A1A7-01 11 34489896 34489896 T C CAT Missense_Mutation p.I463T 0.80 deleterious(0.02) possibly_damaging(0.873) TCGA-DK-A1A7-01 11 55872916 55872916 C A OR8H2 Missense_Mutation p.T133K 0.64 deleterious(0.04) benign(0.01) TCGA-DK-A1A7-01 11 57193147 57193147 G T SLC43A3 Intron 0.26 TCGA-DK-A1A7-01 11 6129404 6129404 C T OR56B4 Silent p.I132I 0.73 TCGA-DK-A1A7-01 11 61544788 61544806 CACAGGTGCCCGACACCGT - MYRF Frame_Shift_Del p.Q549Sfs*50 0.39 TCGA-DK-A1A7-01 11 78433795 78433795 C T TENM4 Missense_Mutation p.D1240N 0.28 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A7-01 12 106500253 106500253 C A NUAK1 Missense_Mutation p.M97I 0.83 deleterious(0.03) probably_damaging(0.985) TCGA-DK-A1A7-01 12 111758093 111758093 G T CUX2 Silent p.P760P 0.39 TCGA-DK-A1A7-01 12 114836462 114836462 G - TBX5 Frame_Shift_Del p.A143Pfs*7 0.46 TCGA-DK-A1A7-01 12 114836463 114836463 G C TBX5 Missense_Mutation p.P142R 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 12 122281692 122281692 G A HPD Missense_Mutation p.S293F 0.42 deleterious(0.03) benign(0.015) TCGA-DK-A1A7-01 12 123200017 123200017 G A HCAR3 3'UTR 0.13 TCGA-DK-A1A7-01 12 130912840 130912840 G A RIMBP2 Missense_Mutation p.R749W 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 12 1675768 1675768 C A FBXL14 3'UTR 0.22 TCGA-DK-A1A7-01 12 21627868 21627868 C T RECQL Missense_Mutation p.G421E 0.66 tolerated(0.08) possibly_damaging(0.625) TCGA-DK-A1A7-01 12 22005388 22005388 C G ABCC9 Missense_Mutation p.E853Q 0.07 deleterious(0.03) benign(0.267) TCGA-DK-A1A7-01 12 31648850 31648850 T G DENND5B Missense_Mutation p.E44A 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-DK-A1A7-01 12 50829280 50829280 G T LARP4 Missense_Mutation p.L136F 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A7-01 12 51442959 51442959 T G LETMD1 Missense_Mutation p.F89V 0.03 deleterious(0) probably_damaging(0.98) TCGA-DK-A1A7-01 12 52164425 52164425 G C SCN8A Missense_Mutation p.E1201D 0.07 deleterious(0) probably_damaging(0.975) TCGA-DK-A1A7-01 12 53677876 53677876 G A ESPL1 Missense_Mutation p.E1038K 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A1A7-01 12 55863095 55863095 A G OR6C70 Silent p.N276N 0.08 TCGA-DK-A1A7-01 12 58197160 58197179 ATTTCCTGCTGAAGTCTGCA - AVIL Splice_Site p.X606_splice 0.67 TCGA-DK-A1A7-01 12 6623746 6623746 A G NCAPD2 Missense_Mutation p.I278V 0.51 tolerated(0.28) benign(0.062) TCGA-DK-A1A7-01 12 69120293 69120305 TTTAGCAAATGGC - NUP107 Frame_Shift_Del p.S532Pfs*15 0.12 TCGA-DK-A1A7-01 12 72057170 72057170 G A ZFC3H1 Missense_Mutation p.S74L 0.05 tolerated_low_confidence(0.7) benign(0.32) TCGA-DK-A1A7-01 12 72680477 72680477 C T TRHDE Nonsense_Mutation p.Q266* 0.16 TCGA-DK-A1A7-01 12 72680639 72680639 C T TRHDE Missense_Mutation p.H320Y 0.19 deleterious(0.02) probably_damaging(0.95) TCGA-DK-A1A7-01 12 98925604 98925604 G C TMPO Missense_Mutation p.D185H 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A1A7-01 13 67802415 67802415 T C PCDH9 Missense_Mutation p.N53S 0.66 tolerated(0.52) benign(0.001) TCGA-DK-A1A7-01 13 76378450 76378450 A G LMO7 5'UTR 0.29 TCGA-DK-A1A7-01 14 24648917 24648917 T G REC8 Missense_Mutation p.L478R 0.33 deleterious(0.02) possibly_damaging(0.555) TCGA-DK-A1A7-01 14 25043947 25043947 C T CTSG Silent p.A91A 0.25 TCGA-DK-A1A7-01 14 51561002 51561002 C T TRIM9 Missense_Mutation p.R219Q 0.24 tolerated(0.51) benign(0.18) TCGA-DK-A1A7-01 14 65197535 65197535 G T PLEKHG3 Silent p.T139T 0.47 TCGA-DK-A1A7-01 14 69262557 69262557 G C ZFP36L1 5'Flank 0.53 TCGA-DK-A1A7-01 14 74489638 74489638 G A CCDC176 Missense_Mutation p.E26K 0.33 deleterious(0) possibly_damaging(0.904) TCGA-DK-A1A7-01 15 20876477 20876477 T C NBEAP1 RNA 0.11 TCGA-DK-A1A7-01 15 28467360 28467360 G A HERC2 Silent p.G1822G 0.34 TCGA-DK-A1A7-01 15 48752456 48752456 G C FBN1 Silent p.T1761T 0.43 TCGA-DK-A1A7-01 15 48787780 48787780 C T FBN1 Missense_Mutation p.D809N 0.38 benign(0.002) TCGA-DK-A1A7-01 15 49309824 49309824 T A SECISBP2L Missense_Mutation p.D391V 0.22 deleterious(0) possibly_damaging(0.864) TCGA-DK-A1A7-01 15 65790284 65790284 C G DPP8 Missense_Mutation p.W227C 0.49 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A7-01 15 72193566 72193566 A G MYO9A Missense_Mutation p.F1039S 0.42 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A7-01 15 74315653 74315653 G A PML Missense_Mutation p.E363K 0.36 tolerated(0.1) benign(0.072) TCGA-DK-A1A7-01 15 76994116 76994116 G A SCAPER Silent p.L831L 0.59 TCGA-DK-A1A7-01 15 79187188 79187188 A T MORF4L1 Missense_Mutation p.T316S 0.45 tolerated(0.07) benign(0.355) TCGA-DK-A1A7-01 15 80445352 80445352 C G FAH Intron 0.25 TCGA-DK-A1A7-01 15 83349915 83349915 C A AP3B2 Missense_Mutation p.Q179H 0.40 deleterious(0.03) probably_damaging(0.976) TCGA-DK-A1A7-01 15 90348650 90348650 G A ANPEP Missense_Mutation p.S220F 0.57 deleterious(0) possibly_damaging(0.722) TCGA-DK-A1A7-01 15 90611334 90611334 C A ZNF710 Missense_Mutation p.P322Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A7-01 15 91290711 91290711 C T BLM Missense_Mutation p.P30L 0.37 deleterious(0) possibly_damaging(0.717) TCGA-DK-A1A7-01 16 23116802 23116802 C G USP31 Missense_Mutation p.R350P 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 16 23445959 23445959 T C COG7 Missense_Mutation p.K229E 0.39 deleterious(0.01) benign(0.404) TCGA-DK-A1A7-01 16 23700964 23700964 C T PLK1 Silent p.L525L 0.47 TCGA-DK-A1A7-01 16 28878329 28878329 G T SH2B1 Missense_Mutation p.R305L 0.46 tolerated(0.9) benign(0.054) TCGA-DK-A1A7-01 16 31102541 31102541 T C VKORC1 Missense_Mutation p.I136V 0.14 tolerated(0.72) benign(0.097) TCGA-DK-A1A7-01 16 57935276 57935276 T A CNGB1 Missense_Mutation p.N986Y 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A1A7-01 16 613383 613383 C G C16orf11 Missense_Mutation p.P30R 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 16 67679643 67679643 G A RLTPR Missense_Mutation p.R50K 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A7-01 16 69725894 69725908 ATTGCAGCAGGCTAC - NFAT5 In_Frame_Del p.L723_T727del 0.30 TCGA-DK-A1A7-01 16 69959346 69959346 C T WWP2 Missense_Mutation p.S398L 0.52 tolerated(0.35) benign(0.001) TCGA-DK-A1A7-01 16 71483770 71483770 T A ZNF23 Missense_Mutation p.N53I 0.27 tolerated(0.44) benign(0.002) TCGA-DK-A1A7-01 16 74685992 74685992 G A RFWD3 Nonsense_Mutation p.Q183* 0.27 TCGA-DK-A1A7-01 16 81232612 81232624 GGGTGGTGGACTC - PKD1L2 Frame_Shift_Del p.E396Kfs*9 0.22 TCGA-DK-A1A7-01 16 88555534 88555534 G A ZFPM1 Missense_Mutation p.E81K 0.30 tolerated(0.06) benign(0.275) TCGA-DK-A1A7-01 16 89345686 89345686 T C ANKRD11 Missense_Mutation p.I2422V 0.44 benign(0.235) TCGA-DK-A1A7-01 16 89702959 89702959 G T DPEP1 Missense_Mutation p.R130L 0.24 tolerated(0.06) benign(0.082) TCGA-DK-A1A7-01 16 919947 919947 C T LMF1 Missense_Mutation p.R451Q 0.60 deleterious(0.02) possibly_damaging(0.595) TCGA-DK-A1A7-01 17 17394774 17394774 A T MED9 Nonsense_Mutation p.K136* 0.25 TCGA-DK-A1A7-01 17 18035826 18035826 G C MYO15A Missense_Mutation p.Q1422H 0.16 unknown(0) TCGA-DK-A1A7-01 17 37026461 37026461 C G LASP1 Missense_Mutation p.R7G 0.52 deleterious(0.02) benign(0.249) TCGA-DK-A1A7-01 17 39261768 39261768 G A KRTAP4-9 Missense_Mutation p.S43N 0.21 deleterious(0.01) unknown(0) TCGA-DK-A1A7-01 17 42337895 42337895 A G SLC4A1 Missense_Mutation p.L121P 0.21 deleterious(0) probably_damaging(0.997) TCGA-DK-A1A7-01 17 54985878 54985878 C G TRIM25 Missense_Mutation p.G215A 0.41 tolerated(0.29) possibly_damaging(0.718) TCGA-DK-A1A7-01 17 56774141 56774141 T C RAD51C Silent p.F164F 0.53 TCGA-DK-A1A7-01 17 72942918 72942918 T C OTOP3 Missense_Mutation p.M323T 0.30 tolerated(0.78) benign(0) TCGA-DK-A1A7-01 17 75471826 75471826 C T SEPT9 Intron 0.23 TCGA-DK-A1A7-01 17 76079209 76079209 C T TNRC6C Missense_Mutation p.H1144Y 0.52 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A7-01 17 79478446 79478446 C T ACTG1 Missense_Mutation p.M190I 0.29 tolerated_low_confidence(0.09) possibly_damaging(0.737) TCGA-DK-A1A7-01 17 8076901 8076901 G A TMEM107 3'Flank 0.28 TCGA-DK-A1A7-01 17 8380347 8380347 C G MYH10 Missense_Mutation p.R1909P 0.23 probably_damaging(0.998) TCGA-DK-A1A7-01 18 11999053 11999053 A G IMPA2 Missense_Mutation p.I33V 0.77 tolerated(0.95) benign(0.002) TCGA-DK-A1A7-01 18 22806433 22806433 G A ZNF521 Silent p.S483S 0.35 TCGA-DK-A1A7-01 18 31318937 31318937 A G ASXL3 Silent p.S523S 0.52 TCGA-DK-A1A7-01 19 33663289 33663289 T C WDR88 Silent p.I395I 0.69 TCGA-DK-A1A7-01 19 37383113 37383113 T G ZNF829 Missense_Mutation p.S275R 0.18 tolerated(0.51) probably_damaging(0.975) TCGA-DK-A1A7-01 19 39877398 39877398 G A PAF1 Missense_Mutation p.S343L 0.21 deleterious(0.03) possibly_damaging(0.474) TCGA-DK-A1A7-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.68 deleterious(0) probably_damaging(0.979) TCGA-DK-A1A7-01 19 49950297 49950297 A G PIH1D1 Missense_Mutation p.V224A 0.68 deleterious(0) benign(0.111) TCGA-DK-A1A7-01 19 56733066 56733066 C A ZSCAN5A Nonsense_Mutation p.E457* 0.19 TCGA-DK-A1A7-01 19 5831721 5831721 G A FUT6 Silent p.P286P 0.35 TCGA-DK-A1A7-01 1 10166548 10166548 C T UBE4B Missense_Mutation p.S368F 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.485) TCGA-DK-A1A7-01 1 111146201 111146201 T A KCNA2 Missense_Mutation p.I402F 0.46 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A7-01 1 112999502 112999502 G A CTTNBP2NL Missense_Mutation p.R463H 0.24 deleterious(0) probably_damaging(0.998) TCGA-DK-A1A7-01 1 152187692 152187692 G A HRNR Missense_Mutation p.S2138F 0.03 unknown(0) TCGA-DK-A1A7-01 1 154321348 154321348 G C ATP8B2 Missense_Mutation p.Q1142H 0.59 tolerated(0.21) benign(0.443) TCGA-DK-A1A7-01 1 155291411 155291411 G A RUSC1 Intron 0.41 TCGA-DK-A1A7-01 1 156352123 156352123 A G RHBG Intron 0.43 TCGA-DK-A1A7-01 1 156713090 156713090 G A HDGF 3'Flank 0.17 TCGA-DK-A1A7-01 1 159842832 159842832 C G CCDC19 Silent p.R493R 0.22 TCGA-DK-A1A7-01 1 160389046 160389046 C A VANGL2 Missense_Mutation p.F149L 0.09 tolerated(0.95) benign(0.023) TCGA-DK-A1A7-01 1 160801216 160801216 A G CD244 Missense_Mutation p.I345T 0.08 deleterious(0) benign(0.243) TCGA-DK-A1A7-01 1 16477395 16477395 T C EPHA2 Missense_Mutation p.K50R 0.12 tolerated(0.11) benign(0.197) TCGA-DK-A1A7-01 1 169101894 169101894 C T NME7 3'UTR 0.47 TCGA-DK-A1A7-01 1 169677940 169677940 G A SELL Silent p.F43F 0.50 TCGA-DK-A1A7-01 1 170043669 170043669 C T KIFAP3 5'UTR 0.39 TCGA-DK-A1A7-01 1 17552363 17552363 C T PADI1 Missense_Mutation p.R156W 0.11 deleterious(0) probably_damaging(0.912) TCGA-DK-A1A7-01 1 19449357 19449357 G C UBR4 Silent p.S3262S 0.14 TCGA-DK-A1A7-01 1 201982072 201982072 C G ELF3 Intron 0.87 TCGA-DK-A1A7-01 1 20248869 20248869 C G PLA2G2E Missense_Mutation p.G70R 0.08 tolerated(0.34) benign(0.08) TCGA-DK-A1A7-01 1 203667472 203667472 A G ATP2B4 Silent p.E127E 0.24 TCGA-DK-A1A7-01 1 207109079 207109079 T C PIGR Missense_Mutation p.E377G 0.82 deleterious(0.04) possibly_damaging(0.894) TCGA-DK-A1A7-01 1 2125504 2125504 A T C1orf86 Missense_Mutation p.L44Q 0.15 deleterious(0.04) probably_damaging(0.955) TCGA-DK-A1A7-01 1 22903038 22903038 G A EPHA8 Missense_Mutation p.R163H 0.09 tolerated(0.16) probably_damaging(0.999) TCGA-DK-A1A7-01 1 23763959 23763959 C T ASAP3 Missense_Mutation p.R370Q 0.07 deleterious(0) probably_damaging(0.961) TCGA-DK-A1A7-01 1 237972202 237972209 TCGTATTA ACGT RYR2 Frame_Shift_Del p.L4767Hfs*7 0.18 TCGA-DK-A1A7-01 1 24392387 24392387 A C MYOM3 Missense_Mutation p.I1176M 0.80 deleterious(0) benign(0.303) TCGA-DK-A1A7-01 1 32381498 32381498 G C PTP4A2 Missense_Mutation p.L63V 0.22 tolerated(0.28) benign(0.007) TCGA-DK-A1A7-01 1 36941192 36941192 C T CSF3R Silent p.K49K 0.57 TCGA-DK-A1A7-01 1 43804317 43804317 C T MPL Missense_Mutation p.P106L 0.49 tolerated(0.1) benign(0.011) TCGA-DK-A1A7-01 1 43886915 43886915 C A SZT2 Missense_Mutation p.P523T 0.32 deleterious(0) possibly_damaging(0.696) TCGA-DK-A1A7-01 1 43917920 43917920 C T HYI Missense_Mutation p.V128I 0.14 tolerated(0.16) benign(0.064) TCGA-DK-A1A7-01 1 46509296 46509296 A G PIK3R3 3'UTR 0.25 TCGA-DK-A1A7-01 1 52704303 52704303 C G ZFYVE9 Missense_Mutation p.T405S 0.28 tolerated_low_confidence(0.12) benign(0.019) TCGA-DK-A1A7-01 1 85331472 85331472 C T LPAR3 Missense_Mutation p.S111N 0.54 deleterious(0.01) benign(0.049) TCGA-DK-A1A7-01 1 92546079 92546079 G A BTBD8 5'UTR 0.59 TCGA-DK-A1A7-01 1 94650459 94650459 G T ARHGAP29 Nonsense_Mutation p.S693* 0.19 TCGA-DK-A1A7-01 20 2315885 2315885 A T TGM3 Missense_Mutation p.D589V 0.11 tolerated(0.09) benign(0.34) TCGA-DK-A1A7-01 20 30193120 30193120 C T ID1 5'UTR 0.28 TCGA-DK-A1A7-01 20 47888256 47888256 A G ZNFX1 Silent p.A31A 0.45 TCGA-DK-A1A7-01 20 52192283 52192283 G A ZNF217 Missense_Mutation p.S1007F 0.27 tolerated(0.21) possibly_damaging(0.547) TCGA-DK-A1A7-01 20 58514308 58514308 C T PPP1R3D Missense_Mutation p.A227T 0.27 tolerated(0.42) benign(0.255) TCGA-DK-A1A7-01 20 60883123 60883123 C T ADRM1 Silent p.L301L 0.38 TCGA-DK-A1A7-01 20 61428545 61428545 T G MRGBP Missense_Mutation p.W78G 0.17 deleterious(0) possibly_damaging(0.562) TCGA-DK-A1A7-01 20 61445149 61445149 C G OGFR 3'UTR 0.67 TCGA-DK-A1A7-01 21 34994369 34994369 C T CRYZL1 Silent p.L50L 0.36 TCGA-DK-A1A7-01 21 41032664 41032664 G C B3GALT5 Missense_Mutation p.V60L 0.09 deleterious(0.03) benign(0.349) TCGA-DK-A1A7-01 22 19961220 19961220 C T ARVCF Missense_Mutation p.V729I 0.11 tolerated(0.1) probably_damaging(0.993) TCGA-DK-A1A7-01 22 21133553 21133553 C G SERPIND1 Intron 0.26 TCGA-DK-A1A7-01 22 36697582 36697582 G A MYH9 Nonsense_Mutation p.Q877* 0.30 TCGA-DK-A1A7-01 22 39126720 39126720 G C GTPBP1 3'UTR 0.30 TCGA-DK-A1A7-01 22 41553195 41553195 G T EP300 Missense_Mutation p.S1095I 0.37 possibly_damaging(0.697) TCGA-DK-A1A7-01 22 41928097 41928097 C A POLR3H Splice_Site p.X120_splice 0.47 TCGA-DK-A1A7-01 22 41980552 41980552 G A PMM1 Silent p.H87H 0.58 TCGA-DK-A1A7-01 22 50563824 50563824 C T MOV10L1 Silent p.L525L 0.76 TCGA-DK-A1A7-01 2 102954647 102954647 C T IL1RL1 5'UTR 0.43 TCGA-DK-A1A7-01 2 11367379 11367379 C T ROCK2 Splice_Site p.X290_splice 0.18 TCGA-DK-A1A7-01 2 144525555 144525555 C G ARHGAP15 Intron 0.24 TCGA-DK-A1A7-01 2 163136571 163136571 C A IFIH1 Missense_Mutation p.D526Y 0.44 deleterious(0.03) benign(0.142) TCGA-DK-A1A7-01 2 170062610 170062610 C G LRP2 Missense_Mutation p.M2493I 0.41 benign(0.002) TCGA-DK-A1A7-01 2 171700564 171700564 T A GAD1 Nonsense_Mutation p.Y216* 0.29 TCGA-DK-A1A7-01 2 179566962 179566962 C T TTN Silent p.S10148S 0.25 TCGA-DK-A1A7-01 2 18764244 18764244 G A NT5C1B Missense_Mutation p.A364V 0.38 deleterious(0.01) benign(0.102) TCGA-DK-A1A7-01 2 202153280 202153280 C T ALS2CR12 3'UTR 0.23 TCGA-DK-A1A7-01 2 219232340 219232340 C A C2orf62 Intron 0.50 TCGA-DK-A1A7-01 2 234669219 234669219 G C UGT1A8 Intron 0.32 TCGA-DK-A1A7-01 2 234669236 234669236 G T UGT1A8 Intron 0.53 TCGA-DK-A1A7-01 2 238726935 238726943 CAAGTTGTA - RBM44 In_Frame_Del p.S460_T462del 0.36 TCGA-DK-A1A7-01 2 32475710 32475710 A T NLRC4 Missense_Mutation p.F408Y 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1A7-01 2 32673877 32673877 G A BIRC6 Missense_Mutation p.S1500N 0.20 benign(0.107) TCGA-DK-A1A7-01 2 39487881 39487881 A G MAP4K3 Missense_Mutation p.F725S 0.27 deleterious(0) possibly_damaging(0.807) TCGA-DK-A1A7-01 2 55544701 55544701 G A CCDC88A Missense_Mutation p.R1200C 0.19 deleterious(0) probably_damaging(0.961) TCGA-DK-A1A7-01 2 68962222 68962222 G A ARHGAP25 5'UTR 0.31 TCGA-DK-A1A7-01 2 80101245 80101245 G T CTNNA2 Missense_Mutation p.R210L 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 2 8919858 8919858 G A KIDINS220 Silent p.I772I 0.37 TCGA-DK-A1A7-01 2 9581956 9581956 C T CPSF3 Missense_Mutation p.H316Y 0.48 tolerated(0.15) benign(0.44) TCGA-DK-A1A7-01 3 10012301 10012301 C G EMC3 Missense_Mutation p.R180P 0.70 deleterious(0) probably_damaging(0.993) TCGA-DK-A1A7-01 3 108273235 108273235 T A KIAA1524 Missense_Mutation p.E771V 0.33 tolerated(0.41) benign(0.003) TCGA-DK-A1A7-01 3 121994736 121994736 G C CASR Silent p.L485L 0.39 TCGA-DK-A1A7-01 3 123046525 123046525 G A ADCY5 Silent p.N629N 0.20 TCGA-DK-A1A7-01 3 136287647 136287647 C T STAG1 Silent p.L118L 0.23 TCGA-DK-A1A7-01 3 139065815 139065815 A T MRPS22 Missense_Mutation p.T90S 0.44 deleterious(0) benign(0.18) TCGA-DK-A1A7-01 3 140695148 140695148 T - SLC25A36 Frame_Shift_Del p.Q266Rfs*19 0.24 TCGA-DK-A1A7-01 3 141671502 141671502 G C TFDP2 Silent p.A398A 0.43 TCGA-DK-A1A7-01 3 142499680 142499680 G A TRPC1 Missense_Mutation p.D257N 0.19 deleterious(0) probably_damaging(0.995) TCGA-DK-A1A7-01 3 15062406 15062406 A G NR2C2 Missense_Mutation p.K194E 0.25 deleterious(0.03) benign(0.356) TCGA-DK-A1A7-01 3 151046556 151046556 A G P2RY13 Silent p.L96L 0.37 TCGA-DK-A1A7-01 3 15762530 15762530 A T ANKRD28 Missense_Mutation p.N266K 0.30 deleterious(0.02) probably_damaging(0.968) TCGA-DK-A1A7-01 3 158390301 158390301 C G LXN 5'UTR 0.37 TCGA-DK-A1A7-01 3 194117570 194117570 C T GP5 Missense_Mutation p.R481H 0.45 tolerated(0.76) benign(0) TCGA-DK-A1A7-01 3 19575409 19575409 A C KCNH8 Missense_Mutation p.S1048R 0.50 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-DK-A1A7-01 3 38537926 38537926 G A EXOG Missense_Mutation p.G23E 0.25 deleterious(0) probably_damaging(0.931) TCGA-DK-A1A7-01 3 42687412 42687412 G A NKTR Missense_Mutation p.S1445N 0.30 deleterious_low_confidence(0) unknown(0) TCGA-DK-A1A7-01 3 46963496 46963496 C T CCDC12 3'UTR 0.17 TCGA-DK-A1A7-01 3 47125299 47125299 C A SETD2 Nonsense_Mutation p.E1991* 0.47 TCGA-DK-A1A7-01 3 48474335 48474335 C T CCDC51 Missense_Mutation p.G240E 0.48 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 3 49051674 49051674 C T WDR6 Nonsense_Mutation p.Q902* 0.19 TCGA-DK-A1A7-01 3 49153998 49153998 G A USP19 Missense_Mutation p.S390L 0.45 tolerated(0.14) probably_damaging(0.984) TCGA-DK-A1A7-01 3 49929204 49929204 G C MST1R Missense_Mutation p.I1113M 0.52 deleterious(0) possibly_damaging(0.895) TCGA-DK-A1A7-01 3 52835110 52835110 A G ITIH3 Missense_Mutation p.H444R 0.50 tolerated(0.24) benign(0.016) TCGA-DK-A1A7-01 3 54420796 54420796 T A CACNA2D3 Missense_Mutation p.L126I 0.25 deleterious(0.05) benign(0.038) TCGA-DK-A1A7-01 3 55504170 55504170 C G WNT5A Missense_Mutation p.V365L 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 4 120484008 120484008 T C PDE5A Missense_Mutation p.I371V 0.27 deleterious(0.01) possibly_damaging(0.639) TCGA-DK-A1A7-01 4 121958158 121958158 A C NDNF Missense_Mutation p.M323R 0.36 tolerated(0.29) benign(0.002) TCGA-DK-A1A7-01 4 134071562 134071562 C A PCDH10 Silent p.P89P 0.37 TCGA-DK-A1A7-01 4 144127185 144127185 G A USP38 Splice_Site p.X404_splice 0.40 TCGA-DK-A1A7-01 4 159092554 159092554 G C FAM198B 5'UTR 0.33 TCGA-DK-A1A7-01 4 164271624 164271624 A G NPY5R Missense_Mutation p.M67V 0.29 tolerated(0.54) benign(0.002) TCGA-DK-A1A7-01 4 169167598 169167598 C A DDX60 Nonsense_Mutation p.G1379* 0.11 TCGA-DK-A1A7-01 4 41748140 41748140 G A PHOX2B Missense_Mutation p.A210V 0.30 deleterious_low_confidence(0.03) unknown(0) TCGA-DK-A1A7-01 4 56471508 56471508 A C NMU Silent p.V123V 0.53 TCGA-DK-A1A7-01 4 71895173 71895173 A C DCK 3'UTR 0.17 TCGA-DK-A1A7-01 4 9784901 9784901 C T DRD5 Silent p.N416N 0.33 TCGA-DK-A1A7-01 5 110459882 110459882 A T WDR36 Missense_Mutation p.N838I 0.16 tolerated(0.06) possibly_damaging(0.493) TCGA-DK-A1A7-01 5 115833065 115833065 A T SEMA6A Silent p.V79V 0.08 TCGA-DK-A1A7-01 5 118865646 118865646 T C HSD17B4 Missense_Mutation p.S634P 0.13 tolerated(0.15) benign(0.013) TCGA-DK-A1A7-01 5 138654644 138654644 T C MATR3 Silent p.D452D 0.29 TCGA-DK-A1A7-01 5 139508200 139508200 G A IGIP Missense_Mutation p.E47K 0.22 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-DK-A1A7-01 5 140186836 140186836 G A PCDHA4 Missense_Mutation p.A22T 0.24 tolerated_low_confidence(0.43) benign(0.036) TCGA-DK-A1A7-01 5 143586786 143586786 A G KCTD16 Missense_Mutation p.Y170C 0.56 deleterious(0.05) possibly_damaging(0.781) TCGA-DK-A1A7-01 5 14492807 14492807 G A TRIO Missense_Mutation p.M2588I 0.16 benign(0.003) TCGA-DK-A1A7-01 5 176308405 176308406 - C HK3 Frame_Shift_Ins p.A842Gfs*89 0.45 TCGA-DK-A1A7-01 5 176707662 176707662 A G NSD1 Missense_Mutation p.I1907V 0.48 tolerated(0.2) benign(0.01) TCGA-DK-A1A7-01 5 177034458 177034458 T G B4GALT7 Missense_Mutation p.L190R 0.18 deleterious(0) probably_damaging(0.991) TCGA-DK-A1A7-01 5 177637274 177637274 G A HNRNPAB Splice_Site p.X310_splice 0.61 TCGA-DK-A1A7-01 5 33576343 33576343 G A ADAMTS12 Missense_Mutation p.T1263M 0.34 tolerated(0.1) benign(0.008) TCGA-DK-A1A7-01 5 34686993 34686993 T C RAI14 5'UTR 0.29 TCGA-DK-A1A7-01 5 36976326 36976326 G C NIPBL Missense_Mutation p.Q439H 0.31 deleterious_low_confidence(0.05) benign(0.254) TCGA-DK-A1A7-01 5 56152428 56152428 C T MAP3K1 Missense_Mutation p.R162C 0.48 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DK-A1A7-01 5 72144225 72144225 A C TNPO1 Missense_Mutation p.E10A 0.79 tolerated(0.95) benign(0.001) TCGA-DK-A1A7-01 5 7817004 7817004 T C ADCY2 Missense_Mutation p.I970T 0.25 deleterious(0) probably_damaging(0.994) TCGA-DK-A1A7-01 5 95242312 95242362 TAGGCCTTCAGGGCCAGTAAGTGAATCACCCTGTCCCTGTATGGCCTCTGA - ELL2 In_Frame_Del p.Q203_Y219del 0.45 TCGA-DK-A1A7-01 6 106547284 106547284 C A PRDM1 Missense_Mutation p.A174D 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A1A7-01 6 107365530 107365530 C A C6orf203 Missense_Mutation p.S184R 0.02 deleterious(0) possibly_damaging(0.905) TCGA-DK-A1A7-01 6 134493873 134493887 GTTCCAGGAAGCAGC - SGK1 In_Frame_Del p.R287_E291del 0.65 TCGA-DK-A1A7-01 6 137325794 137325794 A G IL20RA Silent p.Y276Y 0.63 TCGA-DK-A1A7-01 6 143092722 143092722 C G HIVEP2 Missense_Mutation p.D1052H 0.59 deleterious(0) probably_damaging(0.999) TCGA-DK-A1A7-01 6 159181706 159181706 A C SYTL3 Missense_Mutation p.N448T 0.22 tolerated(0.06) benign(0.045) TCGA-DK-A1A7-01 6 160483635 160483635 C G IGF2R Silent p.P1218P 0.39 TCGA-DK-A1A7-01 6 26020953 26020953 T G HIST1H3A Missense_Mutation p.F79C 0.39 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-DK-A1A7-01 6 30698741 30698765 GCTGGCTTCCGCACCCGGGCCTCCA - FLOT1 Frame_Shift_Del p.L279Rfs*11 0.46 TCGA-DK-A1A7-01 6 31831441 31831441 T A SLC44A4 Missense_Mutation p.N699I 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1A7-01 6 31919363 31919363 G A CFB Silent p.K1209K 0.28 TCGA-DK-A1A7-01 6 32808759 32808759 G A PSMB8 Nonsense_Mutation p.Q270* 0.52 TCGA-DK-A1A7-01 6 32945996 32945996 C A BRD2 Silent p.R558R 0.16 TCGA-DK-A1A7-01 6 33245680 33245680 G T B3GALT4 Nonsense_Mutation p.E162* 0.23 TCGA-DK-A1A7-01 6 41621154 41621154 G C MDFI Silent p.S194S 0.35 TCGA-DK-A1A7-01 6 43970834 43970834 C T C6orf223 Missense_Mutation p.R234C 0.39 tolerated_low_confidence(0.12) benign(0.003) TCGA-DK-A1A7-01 6 45296430 45296430 G T RUNX2 5'UTR 0.42 TCGA-DK-A1A7-01 6 56325021 56325021 A T DST Missense_Mutation p.L5054H 0.43 probably_damaging(1) TCGA-DK-A1A7-01 6 79655145 79655145 C G PHIP Missense_Mutation p.S1567T 0.29 tolerated_low_confidence(0.69) benign(0) TCGA-DK-A1A7-01 6 82910359 82910359 C T IBTK Missense_Mutation p.V953I 0.54 tolerated(0.19) benign(0.001) TCGA-DK-A1A7-01 6 87970340 87970340 C G ZNF292 Silent p.P2331P 0.56 TCGA-DK-A1A7-01 7 100172746 100172746 C G LRCH4 Missense_Mutation p.R679P 0.18 deleterious(0.04) unknown(0) TCGA-DK-A1A7-01 7 102016746 102016746 A T PRKRIP1 5'UTR 0.41 TCGA-DK-A1A7-01 7 102574512 102574512 G A LRRC17 Missense_Mutation p.G51D 0.17 tolerated(0.39) benign(0.017) TCGA-DK-A1A7-01 7 121650516 121650516 G A PTPRZ1 Silent p.T472T 0.59 TCGA-DK-A1A7-01 7 123599683 123599683 A G SPAM1 Missense_Mutation p.Y397C 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A1A7-01 7 133884160 133884160 G A LRGUK Silent p.E578E 0.22 TCGA-DK-A1A7-01 7 139299121 139299121 C T HIPK2 Missense_Mutation p.S634N 0.21 deleterious(0.01) benign(0.019) TCGA-DK-A1A7-01 7 144320258 144320258 C T TPK1 Splice_Site p.X118_splice 0.48 TCGA-DK-A1A7-01 7 1527588 1527588 T C INTS1 Missense_Mutation p.Y775C 0.41 deleterious(0) probably_damaging(0.981) TCGA-DK-A1A7-01 7 2594068 2594068 T G BRAT1 5'UTR 0.41 TCGA-DK-A1A7-01 7 40027759 40027772 AGGAGCCAAGGAGA - CDK13 Frame_Shift_Del p.K594Tfs*20 0.46 TCGA-DK-A1A7-01 7 4171955 4171955 A T SDK1 Splice_Site p.X1377_splice 0.35 TCGA-DK-A1A7-01 7 44556935 44556935 T C NPC1L1 Missense_Mutation p.H1080R 0.28 deleterious(0) possibly_damaging(0.796) TCGA-DK-A1A7-01 7 48026769 48026769 A G SUN3 3'UTR 0.50 TCGA-DK-A1A7-01 7 6210831 6210831 A C CYTH3 Splice_Site p.X188_splice 0.25 TCGA-DK-A1A7-01 7 8260975 8260975 G T ICA1 Missense_Mutation p.Q104K 0.09 tolerated(0.14) benign(0.348) TCGA-DK-A1A7-01 7 94540651 94540651 G A PPP1R9A Missense_Mutation p.R409K 0.53 tolerated(0.15) benign(0.073) TCGA-DK-A1A7-01 7 96810409 96810409 A G ACN9 Missense_Mutation p.E87G 0.62 deleterious(0.04) possibly_damaging(0.828) TCGA-DK-A1A7-01 7 97863074 97863074 G A TECPR1 Missense_Mutation p.S444L 0.44 tolerated(0.36) benign(0.001) TCGA-DK-A1A7-01 8 100146891 100146891 A G VPS13B Missense_Mutation p.Y413C 0.19 deleterious(0) probably_damaging(0.926) TCGA-DK-A1A7-01 8 100443762 100443762 C T VPS13B Intron 0.12 TCGA-DK-A1A7-01 8 145161270 145161270 C A MAF1 Missense_Mutation p.L135M 0.67 deleterious(0.02) probably_damaging(0.967) TCGA-DK-A1A7-01 8 19818562 19818562 G A LPL Silent p.K430K 0.55 TCGA-DK-A1A7-01 8 37914710 37914710 G A EIF4EBP1 Missense_Mutation p.S86N 0.27 tolerated(0.44) benign(0.213) TCGA-DK-A1A7-01 8 55541521 55541521 G T RP1 Missense_Mutation p.L1693F 0.13 tolerated(0.13) benign(0.063) TCGA-DK-A1A7-01 8 62366715 62366715 C G CLVS1 Missense_Mutation p.R216G 0.60 deleterious(0) probably_damaging(0.983) TCGA-DK-A1A7-01 8 67089287 67089287 G A CRH Silent p.G142G 0.18 TCGA-DK-A1A7-01 8 67976623 67976623 G C CSPP1 5'UTR 0.61 TCGA-DK-A1A7-01 8 70539485 70539485 G A SULF1 Missense_Mutation p.E631K 0.57 tolerated(0.61) benign(0.221) TCGA-DK-A1A7-01 8 77763236 77763236 G T ZFHX4 Missense_Mutation p.W1360L 0.17 possibly_damaging(0.504) TCGA-DK-A1A7-01 8 90955588 90955607 ATGTGACCTATTGAATAATA - NBN Splice_Site p.X691_splice 0.53 TCGA-DK-A1A7-01 9 100326379 100326379 G C TMOD1 Missense_Mutation p.V183L 0.44 deleterious(0.04) benign(0) TCGA-DK-A1A7-01 9 100367863 100367863 C T TSTD2 Missense_Mutation p.V339I 0.30 tolerated(0.2) benign(0.355) TCGA-DK-A1A7-01 9 104356643 104356643 A T PPP3R2 3'UTR 0.34 TCGA-DK-A1A7-01 9 123232480 123232480 T C CDK5RAP2 Missense_Mutation p.Y626C 0.26 tolerated(0.41) benign(0.128) TCGA-DK-A1A7-01 9 131329130 131329130 T C SPTAN1 Silent p.R37R 0.57 TCGA-DK-A1A7-01 9 2086985 2086985 C G SMARCA2 Missense_Mutation p.L895V 0.87 benign(0.02) TCGA-DK-A1A7-01 9 34976675 34976675 A G KIAA1045 Missense_Mutation p.I263V 0.52 tolerated(0.33) benign(0.003) TCGA-DK-A1A7-01 9 5231710 5231710 C T INSL4 Missense_Mutation p.R63C 0.77 tolerated(0.07) benign(0.162) TCGA-DK-A1A7-01 9 84532668 84532668 G A SPATA31D5P RNA 0.41 TCGA-DK-A1A7-01 X 100532627 100532627 T A TAF7L Missense_Mutation p.M306L 0.64 tolerated(0.11) benign(0.006) TCGA-DK-A1A7-01 X 11783848 11783848 A G MSL3 Missense_Mutation p.K391E 0.49 tolerated(0.1) possibly_damaging(0.615) TCGA-DK-A1A7-01 X 135428141 135428141 T G GPR112 Nonsense_Mutation p.L759* 0.47 TCGA-DK-A1A7-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.63 TCGA-DK-A1A7-01 X 65242174 65242174 G A VSIG4 Silent p.Y377Y 0.30 TCGA-DK-A1A7-01 X 70784470 70784470 C T OGT Missense_Mutation p.T819I 0.53 deleterious(0) probably_damaging(0.952) TCGA-DK-A1A7-01 X 99854569 99854569 G C TNMD Missense_Mutation p.R270P 0.38 deleterious(0.04) probably_damaging(0.995) TCGA-DK-A1AA-01 10 115540390 115540390 A G PLEKHS1 3'Flank 0.44 TCGA-DK-A1AA-01 10 121685711 121685711 A T SEC23IP Missense_Mutation p.Y762F 0.43 tolerated(0.09) probably_damaging(0.999) TCGA-DK-A1AA-01 10 122619733 122619733 G C WDR11 Missense_Mutation p.K155N 0.45 deleterious(0) probably_damaging(0.947) TCGA-DK-A1AA-01 11 117253629 117253629 C T CEP164 Silent p.V565V 0.30 TCGA-DK-A1AA-01 11 119025544 119025544 C T ABCG4 Missense_Mutation p.S202F 0.42 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AA-01 11 4661919 4661919 A C OR51D1 Missense_Mutation p.N300T 0.06 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AA-01 11 55405931 55405931 A G OR4P4 Missense_Mutation p.Y33C 0.73 deleterious(0.01) possibly_damaging(0.5) TCGA-DK-A1AA-01 12 52777464 52777464 C T KRT84 Missense_Mutation p.R222Q 0.46 tolerated(0.06) benign(0.144) TCGA-DK-A1AA-01 12 54675636 54675636 A G HNRNPA1 Missense_Mutation p.T64A 0.50 tolerated(0.08) benign(0.135) TCGA-DK-A1AA-01 12 56478854 56478854 G T ERBB3 Missense_Mutation p.V104L 0.40 deleterious(0.03) benign(0.22) TCGA-DK-A1AA-01 12 57637894 57637894 G A STAC3 Nonsense_Mutation p.Q325* 0.42 TCGA-DK-A1AA-01 12 95434302 95434302 C A NR2C1 Silent p.L401L 0.44 TCGA-DK-A1AA-01 13 39420751 39420751 G A FREM2 Missense_Mutation p.E2021K 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A1AA-01 13 48986079 48986079 C G LPAR6 Missense_Mutation p.G161R 0.50 tolerated(0.54) benign(0.063) TCGA-DK-A1AA-01 14 23897051 23897051 G A MYH7 Missense_Mutation p.T544I 0.36 deleterious(0) possibly_damaging(0.873) TCGA-DK-A1AA-01 14 74665713 74665713 G A LIN52 3'UTR 0.47 TCGA-DK-A1AA-01 14 95058608 95058608 A G SERPINA5 3'UTR 0.43 TCGA-DK-A1AA-01 15 20488759 20488759 T C CHEK2P2 RNA 0.07 TCGA-DK-A1AA-01 15 42211817 42211817 T C EHD4 Missense_Mutation p.Y172C 0.48 deleterious(0) probably_damaging(0.946) TCGA-DK-A1AA-01 16 2121804 2121804 G T TSC2 Nonsense_Mutation p.E656* 0.29 TCGA-DK-A1AA-01 16 28112860 28112860 G A XPO6 Silent p.F1065F 0.37 TCGA-DK-A1AA-01 16 47163140 47163140 A G NETO2 Missense_Mutation p.L76S 0.42 deleterious(0) probably_damaging(0.987) TCGA-DK-A1AA-01 16 70594445 70594445 G A SF3B3 Missense_Mutation p.G695E 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A1AA-01 16 83636094 83636094 G C CDH13 Missense_Mutation p.E379D 0.35 deleterious(0.01) benign(0.14) TCGA-DK-A1AA-01 17 78166305 78166305 A G CARD14 Missense_Mutation p.K415E 0.37 tolerated(0.3) benign(0.003) TCGA-DK-A1AA-01 17 79095182 79095182 C T AATK Missense_Mutation p.E852K 0.56 tolerated(0.13) benign(0.306) TCGA-DK-A1AA-01 17 8108108 8108108 G A AURKB 3'UTR 0.38 TCGA-DK-A1AA-01 18 29867460 29867460 T A GAREM Missense_Mutation p.H367L 0.43 deleterious(0.05) probably_damaging(0.968) TCGA-DK-A1AA-01 19 14070852 14070852 C T DCAF15 Silent p.F499F 0.47 TCGA-DK-A1AA-01 19 31770348 31770348 C A TSHZ3 Missense_Mutation p.Q117H 0.43 deleterious(0) probably_damaging(0.995) TCGA-DK-A1AA-01 19 36237854 36237854 C T PSENEN 3'UTR 0.28 TCGA-DK-A1AA-01 19 3664824 3664824 T C PIP5K1C Missense_Mutation p.K72R 0.41 deleterious(0.01) possibly_damaging(0.665) TCGA-DK-A1AA-01 19 39950550 39950550 A T SUPT5H Missense_Mutation p.T192S 0.32 deleterious(0.01) possibly_damaging(0.9) TCGA-DK-A1AA-01 19 52955149 52955149 G T ZNF578 5'Flank 0.34 TCGA-DK-A1AA-01 19 55377274 55377274 C T KIR3DL2 Silent p.L339L 0.43 TCGA-DK-A1AA-01 19 9063340 9063340 C T MUC16 Missense_Mutation p.E8036K 0.34 unknown(0) TCGA-DK-A1AA-01 1 110882341 110882341 G A RBM15 Missense_Mutation p.S105N 0.12 tolerated_low_confidence(0.22) benign(0.01) TCGA-DK-A1AA-01 1 147092477 147092477 G T BCL9 Missense_Mutation p.R839L 0.34 deleterious(0.01) probably_damaging(0.968) TCGA-DK-A1AA-01 1 152552220 152552220 G A LCE3D Missense_Mutation p.R65C 0.39 deleterious_low_confidence(0.02) unknown(0) TCGA-DK-A1AA-01 1 153998026 153998026 C A NUP210L Missense_Mutation p.G1372W 0.04 deleterious(0) probably_damaging(0.991) TCGA-DK-A1AA-01 1 158064739 158064739 C T KIRREL Silent p.Y701Y 0.36 TCGA-DK-A1AA-01 1 172278001 172278001 T C DNM3 Intron 0.67 TCGA-DK-A1AA-01 1 173499145 173499145 G A SLC9C2 Missense_Mutation p.R738C 0.56 deleterious(0) possibly_damaging(0.66) TCGA-DK-A1AA-01 1 209974656 209974657 - T IRF6 Frame_Shift_Ins p.R35Tfs*13 0.38 TCGA-DK-A1AA-01 1 228612561 228612561 A G HIST3H3 3'UTR 0.46 TCGA-DK-A1AA-01 1 237947439 237947439 A G RYR2 Missense_Mutation p.K4143E 0.43 possibly_damaging(0.636) TCGA-DK-A1AA-01 1 59156029 59156029 A T MYSM1 Missense_Mutation p.D93E 0.49 tolerated_low_confidence(0.73) benign(0.002) TCGA-DK-A1AA-01 1 79002378 79002378 T C PTGFR 3'UTR 0.58 TCGA-DK-A1AA-01 20 2542536 2542536 G T TMC2 Missense_Mutation p.G145V 0.44 tolerated(0.24) benign(0.004) TCGA-DK-A1AA-01 20 62421844 62421844 G C ZBTB46 Missense_Mutation p.F89L 0.32 deleterious(0.05) probably_damaging(0.997) TCGA-DK-A1AA-01 22 50943119 50943119 C G LMF2 Missense_Mutation p.R492P 0.38 tolerated(0.2) benign(0.041) TCGA-DK-A1AA-01 2 112944789 112944789 C A FBLN7 Silent p.L342L 0.40 TCGA-DK-A1AA-01 2 132285620 132285620 G T CCDC74A Missense_Mutation p.R26L 0.32 tolerated(0.09) probably_damaging(0.969) TCGA-DK-A1AA-01 2 1500391 1500391 G A TPO Missense_Mutation p.S747N 0.05 tolerated(0.5) benign(0.001) TCGA-DK-A1AA-01 2 179410748 179410748 C T TTN Missense_Mutation p.E31739K 0.53 TCGA-DK-A1AA-01 2 179612398 179612398 A G TTN Intron 0.28 TCGA-DK-A1AA-01 2 179656911 179656911 G A TTN Missense_Mutation p.T517I 0.43 TCGA-DK-A1AA-01 2 23980429 23980429 G C ATAD2B Missense_Mutation p.Q1313E 0.41 tolerated(1) benign(0.001) TCGA-DK-A1AA-01 2 68607901 68607901 A G PLEK Missense_Mutation p.Q82R 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A1AA-01 2 69201773 69201774 - G GKN1 Frame_Shift_Ins p.A3Gfs*10 0.36 TCGA-DK-A1AA-01 2 79255430 79255430 T A REG3G 3'UTR 0.39 TCGA-DK-A1AA-01 3 108819338 108819338 G C MORC1 Missense_Mutation p.I80M 0.35 deleterious(0) probably_damaging(0.985) TCGA-DK-A1AA-01 3 165548632 165548632 G T BCHE Missense_Mutation p.P64T 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1AA-01 3 186394879 186394879 C A HRG Missense_Mutation p.P262H 0.43 tolerated(0.1) possibly_damaging(0.893) TCGA-DK-A1AA-01 3 196235134 196235134 C T SMCO1 Missense_Mutation p.R90H 0.44 tolerated(0.23) benign(0.004) TCGA-DK-A1AA-01 3 38565704 38565704 C T EXOG Nonsense_Mutation p.R320* 0.35 TCGA-DK-A1AA-01 3 38639411 38639411 C T SCN5A Missense_Mutation p.A691T 0.16 tolerated(0.08) benign(0.032) TCGA-DK-A1AA-01 3 53756393 53756393 G T CACNA1D Missense_Mutation p.V540L 0.51 deleterious(0.01) probably_damaging(0.937) TCGA-DK-A1AA-01 3 53837556 53837556 A G CACNA1D Missense_Mutation p.S1868G 0.50 tolerated_low_confidence(1) benign(0) TCGA-DK-A1AA-01 3 62739249 62739249 C T CADPS Missense_Mutation p.R252Q 0.42 tolerated(0.22) benign(0.238) TCGA-DK-A1AA-01 3 8543629 8543629 C A LMCD1 Missense_Mutation p.A2E 0.31 tolerated_low_confidence(0.15) benign(0.038) TCGA-DK-A1AA-01 3 8988964 8988964 T C RAD18 Missense_Mutation p.E69G 0.39 deleterious(0.02) possibly_damaging(0.688) TCGA-DK-A1AA-01 4 122740027 122740027 G C CCNA2 Silent p.L348L 0.41 TCGA-DK-A1AA-01 4 1656882 1656882 G A FAM53A Silent p.P235P 0.92 TCGA-DK-A1AA-01 4 176622885 176622885 C - GPM6A Frame_Shift_Del p.G24Afs*7 0.38 TCGA-DK-A1AA-01 4 185578258 185578258 G C PRIMPOL 5'UTR 0.51 TCGA-DK-A1AA-01 4 55130019 55130019 G A PDGFRA Missense_Mutation p.G185R 0.44 tolerated(0.7) probably_damaging(0.999) TCGA-DK-A1AA-01 4 57182439 57182439 C A KIAA1211 Missense_Mutation p.S924Y 0.49 tolerated(1) possibly_damaging(0.781) TCGA-DK-A1AA-01 4 82126123 82126123 G A PRKG2 Missense_Mutation p.R27W 0.48 deleterious(0) possibly_damaging(0.556) TCGA-DK-A1AA-01 5 140474372 140474372 G A PCDHB2 5'UTR 0.36 TCGA-DK-A1AA-01 5 140810424 140810424 A G PCDHGA12 Missense_Mutation p.Y33C 0.45 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-DK-A1AA-01 5 16451745 16451745 T C ZNF622 3'UTR 0.54 TCGA-DK-A1AA-01 5 205240 205240 C T CCDC127 3'UTR 0.73 TCGA-DK-A1AA-01 5 94858955 94858955 G A TTC37 Nonsense_Mutation p.R570* 0.43 TCGA-DK-A1AA-01 6 144794859 144794859 G A UTRN Missense_Mutation p.D1024N 0.45 tolerated(0.24) benign(0.05) TCGA-DK-A1AA-01 6 152651117 152651117 C A SYNE1 Missense_Mutation p.R4901S 0.34 probably_damaging(0.934) TCGA-DK-A1AA-01 6 30867863 30867863 A G DDR1 3'UTR 0.44 TCGA-DK-A1AA-01 6 31842752 31842752 T C SLC44A4 Missense_Mutation p.N99S 0.40 tolerated(0.85) benign(0.126) TCGA-DK-A1AA-01 6 32024427 32024427 C T TNXB Silent p.K2693K 0.42 TCGA-DK-A1AA-01 6 33639056 33639056 A T ITPR3 Missense_Mutation p.M901L 0.44 tolerated(0.41) benign(0.001) TCGA-DK-A1AA-01 6 51497481 51497481 C T PKHD1 Silent p.L3849L 0.40 TCGA-DK-A1AA-01 6 51497483 51497483 A G PKHD1 Silent p.L3849L 0.40 TCGA-DK-A1AA-01 6 76023470 76023470 G T FILIP1 Missense_Mutation p.A693E 0.36 tolerated(0.07) probably_damaging(0.992) TCGA-DK-A1AA-01 7 14775768 14775768 C T DGKB Missense_Mutation p.E74K 0.50 deleterious(0.02) benign(0.194) TCGA-DK-A1AA-01 7 20744417 20744417 C G ABCB5 Missense_Mutation p.A803G 0.39 deleterious(0) possibly_damaging(0.615) TCGA-DK-A1AA-01 7 21788260 21788260 G A DNAH11 Missense_Mutation p.G2865D 0.32 probably_damaging(1) TCGA-DK-A1AA-01 7 27140478 27140478 C T HOXA2 Missense_Mutation p.C333Y 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A1AA-01 7 42950479 42950479 G A C7orf25 Silent p.L65L 0.46 TCGA-DK-A1AA-01 8 110100415 110100415 C T TRHR Missense_Mutation p.S225L 0.44 tolerated(0.13) benign(0.021) TCGA-DK-A1AA-01 8 116599372 116599372 C A TRPS1 Silent p.A852A 0.51 TCGA-DK-A1AA-01 8 26365183 26365183 G A PNMA2 Silent p.D363D 0.45 TCGA-DK-A1AA-01 8 26721924 26721924 G A ADRA1A Missense_Mutation p.S188L 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AA-01 8 79650798 79650798 C G IL7 Missense_Mutation p.D101H 0.30 tolerated(0.11) probably_damaging(0.961) TCGA-DK-A1AA-01 9 131374468 131374469 - T SPTAN1 Frame_Shift_Ins p.N1663* 0.51 TCGA-DK-A1AA-01 X 123211880 123211881 - T STAG2 Frame_Shift_Ins p.K917* 0.45 TCGA-DK-A1AA-01 X 44913157 44913157 G T KDM6A Nonsense_Mutation p.E278* 0.86 TCGA-DK-A1AA-01 Y 15591422 15591422 C A UTY Nonsense_Mutation p.E42* 0.92 TCGA-DK-A1AB-01 10 104262409 104262409 G A ACTR1A 5'UTR 0.27 TCGA-DK-A1AB-01 10 106209909 106209909 C G CCDC147 Silent p.L819L 0.29 TCGA-DK-A1AB-01 10 123673374 123673374 G C ATE1 Missense_Mutation p.H90D 0.29 deleterious(0.04) possibly_damaging(0.662) TCGA-DK-A1AB-01 10 17277345 17277345 G C VIM Missense_Mutation p.E396Q 0.19 deleterious(0) possibly_damaging(0.901) TCGA-DK-A1AB-01 10 18940239 18940239 G A NSUN6 5'UTR 0.37 TCGA-DK-A1AB-01 10 21117520 21117520 G A NEBL Missense_Mutation p.S572F 0.18 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A1AB-01 10 27459817 27459817 G A MASTL Silent p.L643L 0.24 TCGA-DK-A1AB-01 10 28273125 28273125 C G ARMC4 Missense_Mutation p.E224Q 0.06 tolerated(0.14) benign(0.017) TCGA-DK-A1AB-01 10 44112076 44112076 G A ZNF485 Silent p.L195L 0.25 TCGA-DK-A1AB-01 10 63852251 63852251 G A ARID5B Missense_Mutation p.R1010Q 0.24 deleterious(0) probably_damaging(0.919) TCGA-DK-A1AB-01 10 92617282 92617282 C G HTR7 Silent p.L49L 0.31 TCGA-DK-A1AB-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.14 TCGA-DK-A1AB-01 11 19955347 19955347 G A NAV2 Silent p.E542E 0.41 TCGA-DK-A1AB-01 11 55681643 55681643 C G OR5W2 Missense_Mutation p.R139T 0.30 deleterious(0.02) benign(0.144) TCGA-DK-A1AB-01 11 59245789 59245789 C G OR4D10 Nonsense_Mutation p.S296* 0.21 TCGA-DK-A1AB-01 11 61123999 61123999 C T CYB561A3 Intron 0.33 TCGA-DK-A1AB-01 11 61254053 61254053 C T PPP1R32 Nonsense_Mutation p.R269* 0.19 TCGA-DK-A1AB-01 11 65034149 65034149 C T POLA2 Missense_Mutation p.S59L 0.40 tolerated(0.85) benign(0.001) TCGA-DK-A1AB-01 11 69625371 69625371 G C FGF3 Missense_Mutation p.P141R 0.52 deleterious_low_confidence(0.04) benign(0.033) TCGA-DK-A1AB-01 11 70507825 70507825 C T SHANK2 Intron 0.23 TCGA-DK-A1AB-01 11 72145375 72145375 C G CLPB Silent p.L48L 0.58 TCGA-DK-A1AB-01 12 1025522 1025522 C G RAD52 Missense_Mutation p.E285Q 0.29 tolerated(0.15) possibly_damaging(0.459) TCGA-DK-A1AB-01 12 109876422 109876422 G A MYO1H Missense_Mutation p.R748K 0.29 tolerated(0.27) benign(0.011) TCGA-DK-A1AB-01 12 11244751 11244751 G A TAS2R43 Silent p.F26F 0.22 TCGA-DK-A1AB-01 12 112664513 112664513 C G HECTD4 Missense_Mutation p.E2156Q 0.28 probably_damaging(0.942) TCGA-DK-A1AB-01 12 11803042 11803042 G A ETV6 5'UTR 0.21 TCGA-DK-A1AB-01 12 121654786 121654786 G C P2RX4 Missense_Mutation p.E55Q 0.40 tolerated_low_confidence(0.57) unknown(0) TCGA-DK-A1AB-01 12 121654802 121654802 G A P2RX4 Missense_Mutation p.R60K 0.38 tolerated_low_confidence(0.3) unknown(0) TCGA-DK-A1AB-01 12 27067369 27067369 G T ASUN Nonsense_Mutation p.S464* 0.20 TCGA-DK-A1AB-01 12 27573406 27573406 G T ARNTL2 Nonsense_Mutation p.E618* 0.12 TCGA-DK-A1AB-01 12 30833508 30833508 G A IPO8 Nonsense_Mutation p.Q183* 0.33 TCGA-DK-A1AB-01 12 32137616 32137616 G A KIAA1551 Missense_Mutation p.D1243N 0.30 tolerated(0.33) probably_damaging(0.93) TCGA-DK-A1AB-01 12 49230568 49230568 G A DDX23 Silent p.L340L 0.27 TCGA-DK-A1AB-01 12 49722719 49722719 G A TROAP Missense_Mutation p.D301N 0.27 tolerated(0.12) possibly_damaging(0.466) TCGA-DK-A1AB-01 12 51759233 51759233 G A GALNT6 Silent p.L265L 0.31 TCGA-DK-A1AB-01 12 57595667 57595667 G C LRP1 Missense_Mutation p.D3525H 0.21 probably_damaging(0.998) TCGA-DK-A1AB-01 12 72291701 72291701 G A TBC1D15 Missense_Mutation p.R405K 0.27 tolerated(0.12) possibly_damaging(0.746) TCGA-DK-A1AB-01 13 113532599 113532599 G C ATP11A Silent p.L1132L 0.27 TCGA-DK-A1AB-01 13 21157156 21157156 C T IFT88 Missense_Mutation p.P60S 0.22 tolerated(0.46) possibly_damaging(0.787) TCGA-DK-A1AB-01 13 96513055 96513055 C T UGGT2 Missense_Mutation p.E1243K 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A1AB-01 14 100607527 100607527 G A EVL Missense_Mutation p.A369T 0.15 tolerated(0.37) benign(0.056) TCGA-DK-A1AB-01 14 101434481 101434481 C T SNORD114-11 RNA 0.32 TCGA-DK-A1AB-01 14 101532269 101532269 C A MIR410 RNA 0.08 TCGA-DK-A1AB-01 14 105181636 105181636 C T INF2 Missense_Mutation p.S1237F 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A1AB-01 14 105410194 105410194 C T AHNAK2 Missense_Mutation p.R3865H 0.29 benign(0.033) TCGA-DK-A1AB-01 14 39627491 39627491 G A TRAPPC6B Nonsense_Mutation p.Q89* 0.14 TCGA-DK-A1AB-01 14 39783995 39783995 C T CTAGE5 Nonsense_Mutation p.Q455* 0.26 TCGA-DK-A1AB-01 14 50074213 50074213 G A LRR1 Silent p.V126V 0.24 TCGA-DK-A1AB-01 14 50255908 50255908 G A NEMF Missense_Mutation p.H951Y 0.24 deleterious(0.04) benign(0.05) TCGA-DK-A1AB-01 14 50472344 50472344 G C C14orf182 Silent p.L58L 0.22 TCGA-DK-A1AB-01 14 64727309 64727309 G A ESR2 Silent p.L270L 0.38 TCGA-DK-A1AB-01 14 65194411 65194411 C G PLEKHG3 Missense_Mutation p.S21C 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A1AB-01 14 70713661 70713661 G T ADAM21P1 RNA 0.22 TCGA-DK-A1AB-01 14 77605820 77605820 G C ZDHHC22 Missense_Mutation p.P88A 0.33 tolerated(0.81) benign(0) TCGA-DK-A1AB-01 14 89168814 89168814 C G EML5 Missense_Mutation p.L738F 0.10 tolerated(0.31) possibly_damaging(0.568) TCGA-DK-A1AB-01 14 92088132 92088132 G C CATSPERB Missense_Mutation p.L694V 0.27 tolerated(0.31) benign(0.035) TCGA-DK-A1AB-01 14 94464544 94464544 C G LINC00521 RNA 0.46 TCGA-DK-A1AB-01 14 96752292 96752292 C T ATG2B Missense_Mutation p.E2013K 0.25 deleterious(0) probably_damaging(0.954) TCGA-DK-A1AB-01 15 22933811 22933811 C T CYFIP1 Silent p.L244L 0.19 TCGA-DK-A1AB-01 15 23313237 23313237 G A HERC2P2 RNA 0.27 TCGA-DK-A1AB-01 15 25322274 25322274 C T SNORD116-12 RNA 0.19 TCGA-DK-A1AB-01 15 28456169 28456169 C G HERC2 Missense_Mutation p.E2350Q 0.22 benign(0.029) TCGA-DK-A1AB-01 15 29393870 29393870 G A APBA2 Silent p.L469L 0.17 TCGA-DK-A1AB-01 15 34047305 34047305 G C RYR3 Missense_Mutation p.E2813D 0.16 probably_damaging(0.955) TCGA-DK-A1AB-01 15 40856969 40856969 G A C15orf57 Missense_Mutation p.S4F 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-DK-A1AB-01 15 43932621 43932621 C T CATSPER2 Silent p.L154L 0.28 TCGA-DK-A1AB-01 15 50152570 50152570 G A ATP8B4 Missense_Mutation p.H1134Y 0.29 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AB-01 15 57565418 57565418 C G TCF12 Missense_Mutation p.Q646E 0.20 deleterious(0) probably_damaging(0.975) TCGA-DK-A1AB-01 15 64385901 64385901 C T FAM96A Missense_Mutation p.E23K 0.24 tolerated(0.19) benign(0.142) TCGA-DK-A1AB-01 16 19621680 19621680 G A C16orf62 Missense_Mutation p.M411I 0.22 deleterious(0.03) benign(0.164) TCGA-DK-A1AB-01 16 2312402 2312402 C T RNPS1 Missense_Mutation p.G185R 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A1AB-01 16 30910757 30910757 C G CTF1 Nonsense_Mutation p.S16* 0.29 TCGA-DK-A1AB-01 16 3170223 3170223 G A ZNF205 Missense_Mutation p.R521Q 0.27 tolerated(0.16) benign(0.241) TCGA-DK-A1AB-01 16 3569975 3569975 G A CLUAP1 Missense_Mutation p.E218K 0.21 deleterious(0) benign(0.417) TCGA-DK-A1AB-01 16 57063929 57063929 G A NLRC5 Missense_Mutation p.V784M 0.24 tolerated(0.18) benign(0.097) TCGA-DK-A1AB-01 16 57508776 57508776 G A DOK4 Silent p.L176L 0.24 TCGA-DK-A1AB-01 16 57757006 57757006 G A CCDC135 Missense_Mutation p.D501N 0.28 tolerated(0.06) possibly_damaging(0.662) TCGA-DK-A1AB-01 16 58292407 58292407 G A CCDC113 Missense_Mutation p.E176K 0.17 deleterious(0) possibly_damaging(0.78) TCGA-DK-A1AB-01 16 72992824 72992824 G A ZFHX3 Silent p.T407T 0.28 TCGA-DK-A1AB-01 16 80666970 80666970 G T CDYL2 Missense_Mutation p.F260L 0.26 deleterious(0) probably_damaging(0.982) TCGA-DK-A1AB-01 17 2202737 2202737 C A SMG6 Missense_Mutation p.G437V 0.34 deleterious(0.01) possibly_damaging(0.891) TCGA-DK-A1AB-01 17 2222174 2222174 C G SRR Missense_Mutation p.A117G 0.39 deleterious(0.01) benign(0.159) TCGA-DK-A1AB-01 17 3494637 3494637 G A SHPK Nonsense_Mutation p.Q99* 0.40 TCGA-DK-A1AB-01 17 38187864 38187864 C G MED24 Missense_Mutation p.E332Q 0.20 tolerated(0.34) benign(0.238) TCGA-DK-A1AB-01 17 38991464 38991464 C T TMEM99 Silent p.L232L 0.42 TCGA-DK-A1AB-01 17 62020202 62020202 G A SCN4A Silent p.V1424V 0.20 TCGA-DK-A1AB-01 17 65882295 65882295 C T BPTF Intron 0.36 TCGA-DK-A1AB-01 17 7080605 7080605 G A ASGR1 Silent p.S37S 0.10 TCGA-DK-A1AB-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.38 deleterious(0) probably_damaging(0.985) TCGA-DK-A1AB-01 17 7578188 7578188 C A TP53 Nonsense_Mutation p.E221* 0.48 TCGA-DK-A1AB-01 17 78188482 78188482 G C SGSH Silent p.L146L 0.30 TCGA-DK-A1AB-01 18 28710778 28710778 C G DSC1 Intron 0.26 TCGA-DK-A1AB-01 19 14516631 14516631 C T CD97 Silent p.L567L 0.23 TCGA-DK-A1AB-01 19 17487865 17487865 G A PLVAP Missense_Mutation p.T78M 0.23 tolerated(0.07) benign(0.179) TCGA-DK-A1AB-01 19 21606279 21606279 C G ZNF493 Missense_Mutation p.S273C 0.22 deleterious(0.01) benign(0.441) TCGA-DK-A1AB-01 19 23329025 23329025 G C ZNF730 Missense_Mutation p.E393D 0.18 deleterious(0.03) benign(0.043) TCGA-DK-A1AB-01 19 2918122 2918122 G C ZNF57 Missense_Mutation p.E501D 0.42 deleterious(0.01) probably_damaging(0.983) TCGA-DK-A1AB-01 19 39001344 39001344 C G RYR1 Silent p.L3015L 0.21 TCGA-DK-A1AB-01 19 40023151 40023151 C G EID2B Missense_Mutation p.E98Q 0.11 tolerated(0.6) benign(0.004) TCGA-DK-A1AB-01 19 42848852 42848852 C G MEGF8 Nonsense_Mutation p.S655* 0.25 TCGA-DK-A1AB-01 19 43026092 43026092 G A CEACAM1 Silent p.V229V 0.23 TCGA-DK-A1AB-01 19 44039832 44039832 G C ZNF575 Missense_Mutation p.R244T 0.19 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-DK-A1AB-01 19 45285644 45285644 C G CBLC Silent p.L225L 0.17 TCGA-DK-A1AB-01 19 46285508 46285508 C G DMPK 5'Flank 0.50 TCGA-DK-A1AB-01 19 50387619 50387619 C T TBC1D17 Silent p.F412F 0.20 TCGA-DK-A1AB-01 19 51361378 51361378 C G KLK3 Silent p.L100L 0.12 TCGA-DK-A1AB-01 19 54802062 54802062 G A LILRA3 Missense_Mutation p.H376Y 0.25 tolerated(1) benign(0.014) TCGA-DK-A1AB-01 19 54932504 54932504 C G TTYH1 Missense_Mutation p.S120C 0.12 deleterious(0.03) probably_damaging(0.952) TCGA-DK-A1AB-01 19 56243927 56243927 C G NLRP9 Missense_Mutation p.E424Q 0.21 deleterious(0.02) benign(0.424) TCGA-DK-A1AB-01 19 56895710 56895710 C T ZNF582 Missense_Mutation p.R359K 0.11 tolerated(0.14) probably_damaging(0.993) TCGA-DK-A1AB-01 19 57869292 57869292 C G ZNF304 3'UTR 0.23 TCGA-DK-A1AB-01 19 58438051 58438051 G A ZNF418 Missense_Mutation p.H500Y 0.61 deleterious(0) probably_damaging(0.961) TCGA-DK-A1AB-01 19 59028353 59028353 C T ZBTB45 Missense_Mutation p.E230K 0.16 tolerated(0.51) benign(0.335) TCGA-DK-A1AB-01 19 9061174 9061174 G C MUC16 Missense_Mutation p.Q8758E 0.31 unknown(0) TCGA-DK-A1AB-01 19 9800798 9800798 G C ZNF812 3'UTR 0.48 TCGA-DK-A1AB-01 1 100732130 100732130 C T RTCA Silent p.L32L 0.24 TCGA-DK-A1AB-01 1 11861287 11861287 C T MTHFR Missense_Mutation p.E136K 0.15 deleterious(0.02) benign(0.297) TCGA-DK-A1AB-01 1 145558885 145558885 C G ANKRD35 Missense_Mutation p.I168M 0.21 deleterious(0) benign(0.081) TCGA-DK-A1AB-01 1 151491775 151491775 C T CGN Silent p.L260L 0.21 TCGA-DK-A1AB-01 1 155033250 155033250 C T ADAM15 Missense_Mutation p.S740F 0.12 deleterious(0.03) possibly_damaging(0.482) TCGA-DK-A1AB-01 1 155629234 155629234 C T YY1AP1 3'Flank 0.35 TCGA-DK-A1AB-01 1 155629585 155629585 C T YY1AP1 Missense_Mutation p.E844K 0.22 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-DK-A1AB-01 1 155629592 155629592 C T YY1AP1 Silent p.V841V 0.21 TCGA-DK-A1AB-01 1 156261349 156261349 C T TMEM79 Missense_Mutation p.A382V 0.21 tolerated(0.26) benign(0.004) TCGA-DK-A1AB-01 1 158549553 158549553 A G OR10X1 Missense_Mutation p.V46A 0.27 deleterious(0.01) benign(0.004) TCGA-DK-A1AB-01 1 161138959 161138959 G C PPOX Missense_Mutation p.E265Q 0.28 tolerated(0.36) benign(0.038) TCGA-DK-A1AB-01 1 168014277 168014277 G A DCAF6 Silent p.Q690Q 0.29 TCGA-DK-A1AB-01 1 169839492 169839492 C G SCYL3 Missense_Mutation p.E177Q 0.25 tolerated(0.07) possibly_damaging(0.469) TCGA-DK-A1AB-01 1 185112497 185112497 C G TRMT1L Missense_Mutation p.G284A 0.21 tolerated(0.08) possibly_damaging(0.895) TCGA-DK-A1AB-01 1 213303065 213303065 G A RPS6KC1 Missense_Mutation p.R223H 0.28 tolerated(0.14) benign(0.117) TCGA-DK-A1AB-01 1 217975148 217975148 G C SPATA17 Missense_Mutation p.E321Q 0.18 tolerated(0.22) benign(0) TCGA-DK-A1AB-01 1 229773838 229773838 C T URB2 Nonsense_Mutation p.Q1160* 0.32 TCGA-DK-A1AB-01 1 229773886 229773886 C T URB2 Nonsense_Mutation p.Q1176* 0.32 TCGA-DK-A1AB-01 1 230810788 230810788 C T COG2 Missense_Mutation p.S315F 0.24 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AB-01 1 233394101 233394101 C T PCNXL2 Missense_Mutation p.E503K 0.23 tolerated(0.22) benign(0.001) TCGA-DK-A1AB-01 1 242048726 242048726 G A EXO1 Silent p.Q774Q 0.27 TCGA-DK-A1AB-01 1 248551413 248551413 C G OR2T6 Missense_Mutation p.F168L 0.24 deleterious(0) possibly_damaging(0.872) TCGA-DK-A1AB-01 1 28786756 28786756 G C PHACTR4 Missense_Mutation p.R85T 0.18 deleterious(0) probably_damaging(0.931) TCGA-DK-A1AB-01 1 45553865 45553865 C T ZSWIM5 Missense_Mutation p.E214K 0.20 tolerated(0.06) unknown(0) TCGA-DK-A1AB-01 1 57233546 57233546 G A C1orf168 Missense_Mutation p.S340F 0.17 deleterious(0) probably_damaging(0.963) TCGA-DK-A1AB-01 1 57233561 57233561 G A C1orf168 Missense_Mutation p.S335L 0.18 deleterious(0) probably_damaging(0.978) TCGA-DK-A1AB-01 1 64125254 64125254 C G PGM1 Intron 0.32 TCGA-DK-A1AB-01 1 68512369 68512369 G A DIRAS3 Silent p.T204T 0.30 TCGA-DK-A1AB-01 1 85127956 85127956 C G SSX2IP Missense_Mutation p.M284I 0.03 deleterious(0.01) possibly_damaging(0.79) TCGA-DK-A1AB-01 1 92185667 92185667 C G TGFBR3 Missense_Mutation p.G399A 0.32 deleterious(0.01) benign(0.146) TCGA-DK-A1AB-01 20 43030114 43030114 G A HNF4A Silent p.L34L 0.12 TCGA-DK-A1AB-01 20 47713022 47713022 C T CSE1L 3'UTR 0.25 TCGA-DK-A1AB-01 20 48741430 48741430 G A TMEM189 Intron 0.26 TCGA-DK-A1AB-01 20 56728657 56728657 G A C20orf85 Silent p.G42G 0.18 TCGA-DK-A1AB-01 20 60419818 60419818 C G CDH4 Missense_Mutation p.S224C 0.28 deleterious(0.02) benign(0.013) TCGA-DK-A1AB-01 20 62737520 62737520 A C NPBWR2 Missense_Mutation p.V222G 0.32 deleterious(0) benign(0.096) TCGA-DK-A1AB-01 21 10862897 10862897 G C IGHV1OR21-1 Missense_Mutation p.E65Q 0.10 tolerated(0.06) benign(0.431) TCGA-DK-A1AB-01 21 31654758 31654758 G C KRTAP24-1 Missense_Mutation p.L165V 0.25 tolerated(0.18) benign(0.016) TCGA-DK-A1AB-01 21 38862650 38862650 G C DYRK1A Missense_Mutation p.E280Q 0.04 tolerated(0.07) benign(0.214) TCGA-DK-A1AB-01 22 18189520 18189520 C T BCL2L13 Intron 0.23 TCGA-DK-A1AB-01 22 23237769 23237769 G A IGLL5 Silent p.L180L 0.28 TCGA-DK-A1AB-01 22 38038899 38038899 C G SH3BP1 Intron 0.36 TCGA-DK-A1AB-01 2 109100719 109100719 G A GCC2 Missense_Mutation p.E1189K 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-DK-A1AB-01 2 11798719 11798719 G A NTSR2 Silent p.V373V 0.25 TCGA-DK-A1AB-01 2 118582552 118582552 C T DDX18 Silent p.L415L 0.22 TCGA-DK-A1AB-01 2 120194518 120194518 C T TMEM37 Silent p.F25F 0.35 TCGA-DK-A1AB-01 2 135883809 135883809 G A RAB3GAP1 Missense_Mutation p.D297N 0.23 tolerated(0.17) possibly_damaging(0.566) TCGA-DK-A1AB-01 2 152349881 152349881 C T NEB Missense_Mutation p.E8251K 0.26 possibly_damaging(0.673) TCGA-DK-A1AB-01 2 169717349 169717349 G A NOSTRIN Missense_Mutation p.M465I 0.25 tolerated(0.56) benign(0.002) TCGA-DK-A1AB-01 2 179440567 179440567 C G TTN Missense_Mutation p.R23431T 0.26 TCGA-DK-A1AB-01 2 179481949 179481949 C A TTN Nonsense_Mutation p.E15925* 0.33 TCGA-DK-A1AB-01 2 179604510 179604510 C T TTN Missense_Mutation p.E4484K 0.18 TCGA-DK-A1AB-01 2 179605584 179605584 C T TTN Missense_Mutation p.E4126K 0.20 TCGA-DK-A1AB-01 2 196636429 196636429 C T DNAH7 Silent p.L3796L 0.28 TCGA-DK-A1AB-01 2 201437629 201437629 G C SGOL2 Missense_Mutation p.E854Q 0.25 deleterious(0.05) possibly_damaging(0.756) TCGA-DK-A1AB-01 2 206884568 206884568 T A INO80D Missense_Mutation p.I434L 0.16 tolerated(0.28) benign(0.001) TCGA-DK-A1AB-01 2 207009718 207009718 A C NDUFS1 Missense_Mutation p.V271G 0.19 deleterious(0) possibly_damaging(0.739) TCGA-DK-A1AB-01 2 21233133 21233133 C G APOB Missense_Mutation p.D2203H 0.28 possibly_damaging(0.879) TCGA-DK-A1AB-01 2 220246839 220246839 C T DNPEP Missense_Mutation p.G320E 0.22 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AB-01 2 235943740 235943740 G A SH3BP4 Missense_Mutation p.E32K 0.18 tolerated_low_confidence(0.05) benign(0.271) TCGA-DK-A1AB-01 2 238277324 238277324 G C COL6A3 Missense_Mutation p.F1594L 0.12 benign(0.267) TCGA-DK-A1AB-01 2 238283544 238283544 G A COL6A3 Missense_Mutation p.R1064W 0.28 probably_damaging(0.994) TCGA-DK-A1AB-01 2 27460592 27460592 G A CAD Missense_Mutation p.E1524K 0.23 tolerated(0.95) benign(0.001) TCGA-DK-A1AB-01 2 45826690 45826690 C G SRBD1 Missense_Mutation p.K182N 0.18 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DK-A1AB-01 2 49244635 49244635 G A FSHR Nonsense_Mutation p.Q123* 0.21 TCGA-DK-A1AB-01 2 54874297 54874297 G A SPTBN1 Silent p.K1632K 0.22 TCGA-DK-A1AB-01 2 74779555 74779555 G A LOXL3 Silent p.I69I 0.31 TCGA-DK-A1AB-01 2 97373526 97373526 C G LMAN2L Missense_Mutation p.E288Q 0.26 tolerated(0.31) benign(0.006) TCGA-DK-A1AB-01 3 111996650 111996650 G C SLC9C1 Missense_Mutation p.L126V 0.23 tolerated(0.19) probably_damaging(0.999) TCGA-DK-A1AB-01 3 124746337 124746337 G A HEG1 Missense_Mutation p.H209Y 0.18 tolerated_low_confidence(0.1) benign(0.25) TCGA-DK-A1AB-01 3 127295478 127295478 C T TPRA1 Silent p.L160L 0.17 TCGA-DK-A1AB-01 3 12858016 12858016 T A CAND2 Missense_Mutation p.C529S 0.07 tolerated(0.22) probably_damaging(0.978) TCGA-DK-A1AB-01 3 134920360 134920360 C G EPHB1 Silent p.L725L 0.28 TCGA-DK-A1AB-01 3 136045670 136045670 G C PCCB Silent p.V392V 0.17 TCGA-DK-A1AB-01 3 136676841 136676841 C G IL20RB 5'UTR 0.23 TCGA-DK-A1AB-01 3 148897410 148897410 G A CP Missense_Mutation p.S865F 0.13 deleterious(0.01) probably_damaging(0.966) TCGA-DK-A1AB-01 3 155232664 155232664 T A PLCH1 Missense_Mutation p.T482S 0.23 tolerated(0.06) benign(0.354) TCGA-DK-A1AB-01 3 160156757 160156757 G C TRIM59 Missense_Mutation p.S72C 0.24 deleterious(0) probably_damaging(0.984) TCGA-DK-A1AB-01 3 17349598 17349598 C T TBC1D5 Missense_Mutation p.E342K 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A1AB-01 3 178952074 178952074 G T PIK3CA Missense_Mutation p.M1043I 0.34 tolerated(0.11) benign(0.054) TCGA-DK-A1AB-01 3 179399668 179399668 T A USP13 Missense_Mutation p.N57K 0.27 tolerated(0.11) benign(0.012) TCGA-DK-A1AB-01 3 47142947 47142947 C T SETD2 Splice_Site p.X1672_splice 0.31 TCGA-DK-A1AB-01 3 62261595 62261595 G A PTPRG Silent p.Q1171Q 0.42 TCGA-DK-A1AB-01 3 73114035 73114035 C G PPP4R2 Nonsense_Mutation p.S224* 0.29 TCGA-DK-A1AB-01 4 10083020 10083020 G A WDR1 Silent p.V415V 0.31 TCGA-DK-A1AB-01 4 103595103 103595103 G A MANBA Missense_Mutation p.S362L 0.27 deleterious(0) possibly_damaging(0.858) TCGA-DK-A1AB-01 4 109004529 109004529 G A LEF1 Silent p.I207I 0.32 TCGA-DK-A1AB-01 4 140309202 140309202 T A NAA15 Missense_Mutation p.S855R 0.29 tolerated(0.19) benign(0.001) TCGA-DK-A1AB-01 4 141320087 141320087 C G CLGN Missense_Mutation p.E268Q 0.04 deleterious(0.01) benign(0.243) TCGA-DK-A1AB-01 4 144469207 144469207 G C SMARCA5 Missense_Mutation p.E967Q 0.28 deleterious(0.01) benign(0.213) TCGA-DK-A1AB-01 4 153791962 153791962 G A ARFIP1 Missense_Mutation p.R87Q 0.20 tolerated(0.08) benign(0.001) TCGA-DK-A1AB-01 4 156617936 156617936 G C GUCY1A3 5'UTR 0.18 TCGA-DK-A1AB-01 4 164534603 164534603 C G MARCH1 Intron 0.21 TCGA-DK-A1AB-01 4 47593107 47593107 G C ATP10D Silent p.L1330L 0.25 TCGA-DK-A1AB-01 4 6087327 6087327 C G JAKMIP1 Silent p.V218V 0.21 TCGA-DK-A1AB-01 4 68619664 68619664 G A GNRHR Silent p.F130F 0.23 TCGA-DK-A1AB-01 4 99982540 99982540 G C METAP1 3'UTR 0.22 TCGA-DK-A1AB-01 5 101834305 101834305 C G SLCO6A1 Missense_Mutation p.D82H 0.33 tolerated(0.09) possibly_damaging(0.811) TCGA-DK-A1AB-01 5 10391798 10391798 G A MARCH6 Missense_Mutation p.D241N 0.25 tolerated(0.48) benign(0.045) TCGA-DK-A1AB-01 5 112770004 112770004 G A TSSK1B Missense_Mutation p.S178L 0.19 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AB-01 5 126734416 126734416 G C MEGF10 Missense_Mutation p.Q236H 0.24 tolerated(0.36) benign(0.163) TCGA-DK-A1AB-01 5 137621218 137621218 G C CDC25C 3'UTR 0.27 TCGA-DK-A1AB-01 5 141025388 141025388 C G FCHSD1 Missense_Mutation p.E421Q 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A1AB-01 5 160758051 160758051 C T GABRB2 Missense_Mutation p.D306N 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A1AB-01 5 176910713 176910713 C G PDLIM7 Missense_Mutation p.E436Q 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-DK-A1AB-01 5 179318451 179318451 G A TBC1D9B Silent p.F324F 0.34 TCGA-DK-A1AB-01 5 37185055 37185055 T A C5orf42 Missense_Mutation p.E1439V 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A1AB-01 5 43533846 43533846 C T PAIP1 Missense_Mutation p.D416N 0.18 deleterious(0) probably_damaging(0.977) TCGA-DK-A1AB-01 5 7817056 7817056 C T ADCY2 Silent p.I987I 0.22 TCGA-DK-A1AB-01 5 79732916 79732916 C T ZFYVE16 Missense_Mutation p.H138Y 0.06 deleterious(0.02) possibly_damaging(0.538) TCGA-DK-A1AB-01 5 92929285 92929285 G A NR2F1 Missense_Mutation p.D337N 0.22 deleterious(0.05) possibly_damaging(0.58) TCGA-DK-A1AB-01 6 27839872 27839872 C T HIST1H3I Silent p.E74E 0.39 TCGA-DK-A1AB-01 6 31617000 31617000 G A BAG6 Silent p.V133V 0.40 TCGA-DK-A1AB-01 6 32017875 32017875 G A TNXB 5'Flank 0.50 TCGA-DK-A1AB-01 6 42978430 42978430 G C PPP2R5D Missense_Mutation p.E504Q 0.35 tolerated(0.06) benign(0.135) TCGA-DK-A1AB-01 6 43156401 43156401 G C CUL9 Missense_Mutation p.E710Q 0.36 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AB-01 6 7581491 7581491 G A DSP Missense_Mutation p.E1690K 0.35 probably_damaging(0.987) TCGA-DK-A1AB-01 6 75843060 75843060 G T COL12A1 Missense_Mutation p.P1915T 0.30 probably_damaging(1) TCGA-DK-A1AB-01 6 84563822 84563822 G A RIPPLY2 Missense_Mutation p.D61N 0.35 tolerated(0.35) benign(0.01) TCGA-DK-A1AB-01 7 143633147 143633147 C G OR2F2 Missense_Mutation p.I274M 0.23 deleterious(0.03) possibly_damaging(0.512) TCGA-DK-A1AB-01 7 14733765 14733765 G A DGKB Silent p.L216L 0.50 TCGA-DK-A1AB-01 7 17378911 17378911 G T AHR Nonsense_Mutation p.E488* 0.26 TCGA-DK-A1AB-01 7 41740025 41740025 C G INHBA 5'UTR 0.23 TCGA-DK-A1AB-01 7 63809022 63809022 G C ZNF736 Missense_Mutation p.E261Q 0.17 deleterious(0.02) probably_damaging(0.981) TCGA-DK-A1AB-01 7 73933938 73933938 G C GTF2IRD1 Missense_Mutation p.E301Q 0.20 deleterious(0.02) possibly_damaging(0.777) TCGA-DK-A1AB-01 7 76033741 76033741 C T SRCRB4D Missense_Mutation p.E6K 0.12 deleterious_low_confidence(0) benign(0.185) TCGA-DK-A1AB-01 7 77408178 77408178 C G RSBN1L Missense_Mutation p.S745C 0.28 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-DK-A1AB-01 7 96810512 96810512 G C ACN9 Missense_Mutation p.M121I 0.21 tolerated(0.15) benign(0) TCGA-DK-A1AB-01 7 99801641 99801641 C T STAG3 Intron 0.24 TCGA-DK-A1AB-01 8 100904266 100904266 G C COX6C 5'UTR 0.28 TCGA-DK-A1AB-01 8 105459566 105459566 C T DPYS Missense_Mutation p.D197N 0.26 deleterious(0.04) probably_damaging(0.928) TCGA-DK-A1AB-01 8 10584142 10584142 C G SOX7 Missense_Mutation p.K143N 0.20 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AB-01 8 107763046 107763046 G A OXR1 Silent p.A834A 0.17 TCGA-DK-A1AB-01 8 109498889 109498889 A G EMC2 3'UTR 0.14 TCGA-DK-A1AB-01 8 113348981 113348981 G A CSMD3 Nonsense_Mutation p.Q2307* 0.20 TCGA-DK-A1AB-01 8 121530149 121530149 C T MTBP Missense_Mutation p.H769Y 0.24 tolerated(0.18) benign(0.291) TCGA-DK-A1AB-01 8 17612647 17612647 C G MTUS1 Missense_Mutation p.D224H 0.14 deleterious(0.01) possibly_damaging(0.672) TCGA-DK-A1AB-01 8 35406937 35406937 G A UNC5D Silent p.A77A 0.23 TCGA-DK-A1AB-01 8 59494245 59494245 G C SDCBP Silent p.R281R 0.24 TCGA-DK-A1AB-01 8 59494315 59494315 G A SDCBP 3'UTR 0.24 TCGA-DK-A1AB-01 8 77764240 77764240 C T ZFHX4 Nonsense_Mutation p.Q1695* 0.27 TCGA-DK-A1AB-01 8 98900279 98900279 C G MATN2 5'UTR 0.44 TCGA-DK-A1AB-01 9 104309797 104309797 G A RNF20 Silent p.L363L 0.28 TCGA-DK-A1AB-01 9 107547853 107547853 C G ABCA1 Missense_Mutation p.D2157H 0.30 tolerated(0.13) benign(0.057) TCGA-DK-A1AB-01 9 114145501 114145501 G A KIAA0368 Nonsense_Mutation p.R1443* 0.12 TCGA-DK-A1AB-01 9 119460323 119460323 G A TRIM32 Missense_Mutation p.R101Q 0.25 tolerated(0.25) benign(0.062) TCGA-DK-A1AB-01 9 133780649 133780649 G C FIBCD1 Silent p.L366L 0.20 TCGA-DK-A1AB-01 9 19082988 19082988 C G HAUS6 Missense_Mutation p.E251D 0.32 deleterious(0.02) possibly_damaging(0.449) TCGA-DK-A1AB-01 9 86457231 86457231 C G KIF27 Missense_Mutation p.K1214N 0.32 deleterious(0.01) probably_damaging(1) TCGA-DK-A1AB-01 X 139865962 139865962 G A CDR1 Silent p.F190F 0.32 TCGA-DK-A1AB-01 X 44969327 44969327 G T KDM6A Nonsense_Mutation p.E1337* 0.10 TCGA-DK-A1AB-01 X 55033263 55033263 G A APEX2 Missense_Mutation p.A318T 0.35 tolerated(0.1) benign(0.013) TCGA-DK-A1AB-01 X 73964271 73964271 G C KIAA2022 Missense_Mutation p.L41V 0.54 tolerated_low_confidence(0.49) benign(0.008) TCGA-DK-A1AB-01 X 75004933 75004933 G C MAGEE2 5'UTR 0.32 TCGA-DK-A1AC-01 10 100022549 100022549 G A LOXL4 Silent p.F76F 0.52 TCGA-DK-A1AC-01 10 101514304 101514304 G T CUTC Missense_Mutation p.R207I 0.26 deleterious(0) benign(0.034) TCGA-DK-A1AC-01 10 101594192 101594192 G A ABCC2 Missense_Mutation p.C1105Y 0.48 tolerated(0.17) benign(0.17) TCGA-DK-A1AC-01 10 101945387 101945387 C T ERLIN1 5'UTR 0.54 TCGA-DK-A1AC-01 10 101953863 101953865 TCT - CHUK In_Frame_Del p.K617del 0.54 TCGA-DK-A1AC-01 10 101959727 101959727 C T CHUK Splice_Site p.X577_splice 0.19 TCGA-DK-A1AC-01 10 102746534 102746534 C T MRPL43 Missense_Mutation p.R146Q 0.23 deleterious(0.03) possibly_damaging(0.885) TCGA-DK-A1AC-01 10 103588903 103588903 G A KCNIP2 Silent p.L108L 0.17 TCGA-DK-A1AC-01 10 103789330 103789330 G A C10orf76 Intron 0.18 TCGA-DK-A1AC-01 10 104679815 104679815 C T CNNM2 Silent p.F526F 0.29 TCGA-DK-A1AC-01 10 111881975 111881975 G A ADD3 Silent p.V356V 0.31 TCGA-DK-A1AC-01 10 112636474 112636474 C T PDCD4 Intron 0.31 TCGA-DK-A1AC-01 10 114186017 114186017 C T ACSL5 Missense_Mutation p.S636L 0.26 deleterious(0.04) benign(0.233) TCGA-DK-A1AC-01 10 115402797 115402797 C A NRAP Missense_Mutation p.V371L 0.22 tolerated(0.37) probably_damaging(0.992) TCGA-DK-A1AC-01 10 115609522 115609522 C T DCLRE1A Missense_Mutation p.E448K 0.43 tolerated(0.21) benign(0.015) TCGA-DK-A1AC-01 10 116062228 116062228 C T AFAP1L2 Missense_Mutation p.E434K 0.24 deleterious(0.03) probably_damaging(0.964) TCGA-DK-A1AC-01 10 116593033 116593033 C T FAM160B1 Silent p.L56L 0.25 TCGA-DK-A1AC-01 10 119799772 119799772 G A RAB11FIP2 Nonsense_Mutation p.Q220* 0.09 TCGA-DK-A1AC-01 10 120928689 120928689 C T PRDX3 Silent p.T239T 0.25 TCGA-DK-A1AC-01 10 121411190 121411190 G A BAG3 Translation_Start_Site p.M1? 0.63 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DK-A1AC-01 10 123239498 123239498 G A FGFR2 Missense_Mutation p.S781L 0.28 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AC-01 10 123325072 123325072 C T FGFR2 Missense_Mutation p.V86M 0.24 tolerated(0.18) possibly_damaging(0.783) TCGA-DK-A1AC-01 10 126172787 126172787 C T LHPP Nonsense_Mutation p.Q69* 0.22 TCGA-DK-A1AC-01 10 126301921 126301921 G C LHPP Missense_Mutation p.D269H 0.47 tolerated_low_confidence(0.27) benign(0.001) TCGA-DK-A1AC-01 10 126670348 126670348 G A ZRANB1 Missense_Mutation p.E500K 0.24 deleterious(0) benign(0.098) TCGA-DK-A1AC-01 10 127525285 127525285 C T DHX32 Missense_Mutation p.E735K 0.25 deleterious(0.03) benign(0.11) TCGA-DK-A1AC-01 10 129924015 129924015 C T MKI67 5'UTR 0.24 TCGA-DK-A1AC-01 10 131964842 131964842 G A GLRX3 Missense_Mutation p.D184N 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-DK-A1AC-01 10 134015509 134015509 A C DPYSL4 Missense_Mutation p.K390N 0.13 deleterious(0) probably_damaging(0.987) TCGA-DK-A1AC-01 10 134218707 134218707 G A PWWP2B Missense_Mutation p.E235K 0.27 tolerated(0.11) possibly_damaging(0.711) TCGA-DK-A1AC-01 10 134261557 134261557 G A C10orf91 Missense_Mutation p.E144K 0.17 tolerated_low_confidence(0.11) benign(0) TCGA-DK-A1AC-01 10 134261583 134261583 C T C10orf91 3'UTR 0.13 TCGA-DK-A1AC-01 10 134511403 134511403 C T INPP5A Missense_Mutation p.P152S 0.24 deleterious(0.02) benign(0.14) TCGA-DK-A1AC-01 10 134622338 134622338 G A TTC40 Nonsense_Mutation p.Q2579* 0.23 TCGA-DK-A1AC-01 10 13708121 13708121 G A FRMD4A Nonsense_Mutation p.Q527* 0.52 TCGA-DK-A1AC-01 10 15254893 15254893 G C FAM171A1 3'UTR 0.26 TCGA-DK-A1AC-01 10 17641359 17641359 C T PTPLA Missense_Mutation p.E179K 0.36 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 10 20436813 20436813 C T PLXDC2 Silent p.I255I 0.31 TCGA-DK-A1AC-01 10 21785724 21785724 G A CASC10 Missense_Mutation p.S7L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-DK-A1AC-01 10 21804624 21804624 C T SKIDA1 Missense_Mutation p.E710K 0.48 tolerated(0.29) unknown(0) TCGA-DK-A1AC-01 10 24832553 24832553 G A KIAA1217 Missense_Mutation p.D1452N 0.48 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 10 25883235 25883235 C G GPR158 Nonsense_Mutation p.S636* 0.27 TCGA-DK-A1AC-01 10 27524079 27524079 C T ACBD5 Missense_Mutation p.E82K 0.28 tolerated(0.07) possibly_damaging(0.614) TCGA-DK-A1AC-01 10 29811369 29811369 G A SVIL Missense_Mutation p.S1120L 0.52 deleterious(0.01) benign(0.005) TCGA-DK-A1AC-01 10 30984863 30984863 C T SVILP1 RNA 0.25 TCGA-DK-A1AC-01 10 3111571 3111571 G C PFKP Intron 0.50 TCGA-DK-A1AC-01 10 35894525 35894525 C T GJD4 Silent p.L10L 0.25 TCGA-DK-A1AC-01 10 37508401 37508401 C T ANKRD30A Missense_Mutation p.S1198F 0.57 deleterious(0.01) possibly_damaging(0.831) TCGA-DK-A1AC-01 10 43016428 43016428 C T ZNF37BP RNA 0.13 TCGA-DK-A1AC-01 10 43087947 43087947 G A ZNF33B 3'UTR 0.15 TCGA-DK-A1AC-01 10 43292488 43292488 C T BMS1 Missense_Mutation p.S599L 0.51 tolerated(0.43) benign(0.002) TCGA-DK-A1AC-01 10 43612094 43612094 C T RET Silent p.G733G 0.14 TCGA-DK-A1AC-01 10 43651198 43651198 G A CSGALNACT2 Missense_Mutation p.E201K 0.28 tolerated(0.5) possibly_damaging(0.482) TCGA-DK-A1AC-01 10 45488852 45488852 C T RASSF4 3'UTR 0.27 TCGA-DK-A1AC-01 10 48416478 48416478 C G GDF2 Silent p.L72L 0.22 TCGA-DK-A1AC-01 10 48416501 48416501 C G GDF2 Missense_Mutation p.D65H 0.20 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 10 51549561 51549561 C T MSMB 5'UTR 0.10 TCGA-DK-A1AC-01 10 54076536 54076536 C T DKK1 Missense_Mutation p.S257F 0.60 deleterious(0) probably_damaging(0.962) TCGA-DK-A1AC-01 10 63700148 63700148 C T ARID5B Silent p.L161L 0.56 TCGA-DK-A1AC-01 10 64967741 64967741 G T JMJD1C Missense_Mutation p.P1230T 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 10 64974489 64974489 G A JMJD1C Missense_Mutation p.P480S 0.24 tolerated_low_confidence(0.2) benign(0.001) TCGA-DK-A1AC-01 10 69748508 69748513 AGTTTC GGTTT HERC4 Frame_Shift_Del p.K572Nfs*23 0.26 TCGA-DK-A1AC-01 10 71026541 71026541 C G HKDC1 3'UTR 0.45 TCGA-DK-A1AC-01 10 71332454 71332454 C T NEUROG3 Missense_Mutation p.D116N 0.23 deleterious(0) possibly_damaging(0.541) TCGA-DK-A1AC-01 10 71902546 71902546 G A TYSND1 Missense_Mutation p.S454L 0.23 deleterious(0) possibly_damaging(0.608) TCGA-DK-A1AC-01 10 73082533 73082533 G A SLC29A3 Missense_Mutation p.D8N 0.20 tolerated_low_confidence(0.4) benign(0.001) TCGA-DK-A1AC-01 10 75567514 75567514 G C NDST2 Silent p.L211L 0.17 TCGA-DK-A1AC-01 10 75960592 75960592 G A ADK Missense_Mutation p.D46N 0.23 tolerated(0.09) benign(0.022) TCGA-DK-A1AC-01 10 81373965 81373965 C T SFTPA1 3'Flank 0.25 TCGA-DK-A1AC-01 10 88260375 88260375 C T WAPAL Missense_Mutation p.D209N 0.22 tolerated_low_confidence(0.05) benign(0.35) TCGA-DK-A1AC-01 10 88439133 88439133 G A LDB3 Missense_Mutation p.G35S 0.47 tolerated(0.1) probably_damaging(0.999) TCGA-DK-A1AC-01 10 88696506 88696506 C T MMRN2 Silent p.K948K 0.57 TCGA-DK-A1AC-01 10 91403631 91403631 G A PANK1 Intron 0.21 TCGA-DK-A1AC-01 10 92617043 92617043 G C HTR7 Missense_Mutation p.S129W 0.15 deleterious(0.03) probably_damaging(1) TCGA-DK-A1AC-01 10 93185076 93185076 C T HECTD2 Silent p.F59F 0.15 TCGA-DK-A1AC-01 10 95242041 95242044 TCTC - MYOF 5'Flank 0.65 TCGA-DK-A1AC-01 10 95400233 95400233 G C PDE6C Silent p.V552V 0.25 TCGA-DK-A1AC-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.19 TCGA-DK-A1AC-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.32 TCGA-DK-A1AC-01 10 96698472 96698472 C G CYP2C9 Silent p.L11L 0.52 TCGA-DK-A1AC-01 10 97366442 97366442 G A ALDH18A1 3'UTR 0.21 TCGA-DK-A1AC-01 10 97607265 97607265 C T ENTPD1 Silent p.N304N 0.26 TCGA-DK-A1AC-01 10 97964290 97964290 C T BLNK Silent p.Q300Q 0.39 TCGA-DK-A1AC-01 10 98144396 98144396 G A TLL2 Silent p.F714F 0.25 TCGA-DK-A1AC-01 10 98336574 98336574 C G TM9SF3 Missense_Mutation p.E39Q 0.27 deleterious(0.01) probably_damaging(0.917) TCGA-DK-A1AC-01 10 98392650 98392650 G A PIK3AP1 Intron 0.19 TCGA-DK-A1AC-01 10 99190329 99190329 G A PGAM1 Silent p.Q111Q 0.21 TCGA-DK-A1AC-01 11 102736603 102736603 G T MMP12 RNA 0.34 TCGA-DK-A1AC-01 11 10327400 10327400 G A ADM Intron 0.29 TCGA-DK-A1AC-01 11 104899926 104899926 C A CASP1 Nonsense_Mutation p.E311* 0.30 TCGA-DK-A1AC-01 11 106680837 106680837 G A GUCY1A2 Missense_Mutation p.S525L 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 11 107799300 107799300 G C RAB39A Missense_Mutation p.E2D 0.44 tolerated(0.41) benign(0.05) TCGA-DK-A1AC-01 11 107968457 107968457 C T CUL5 Missense_Mutation p.S667L 0.33 tolerated(0.37) benign(0.018) TCGA-DK-A1AC-01 11 1081800 1081800 G A MUC2 Silent p.L576L 0.44 TCGA-DK-A1AC-01 11 10822517 10822517 G A EIF4G2 Silent p.L511L 0.22 TCGA-DK-A1AC-01 11 111614220 111614220 G A PPP2R1B Silent p.L478L 0.36 TCGA-DK-A1AC-01 11 111753253 111753253 G T C11orf1 Silent p.L69L 0.43 TCGA-DK-A1AC-01 11 111957629 111957629 G A SDHD 5'UTR 0.42 TCGA-DK-A1AC-01 11 113651192 113651192 G A CLDN25 Silent p.R225R 0.28 TCGA-DK-A1AC-01 11 118348840 118348840 G A KMT2A Missense_Mutation p.E1165K 0.35 probably_damaging(0.992) TCGA-DK-A1AC-01 11 118773239 118773239 C T BCL9L Missense_Mutation p.E405K 0.26 probably_damaging(0.996) TCGA-DK-A1AC-01 11 118899929 118899929 C T SLC37A4 Intron 0.31 TCGA-DK-A1AC-01 11 118965672 118965672 C T H2AFX 3'UTR 0.44 TCGA-DK-A1AC-01 11 119044185 119044185 C T NLRX1 Intron 0.32 TCGA-DK-A1AC-01 11 119044232 119044232 C G NLRX1 Missense_Mutation p.R92G 0.29 tolerated(0.1) probably_damaging(0.998) TCGA-DK-A1AC-01 11 119044292 119044292 G A NLRX1 Missense_Mutation p.D112N 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A1AC-01 11 119050897 119050897 G A NLRX1 Missense_Mutation p.G723R 0.36 deleterious(0.03) benign(0.135) TCGA-DK-A1AC-01 11 119181552 119181552 G A MCAM Silent p.I569I 0.28 TCGA-DK-A1AC-01 11 120989420 120989420 G C TECTA Missense_Mutation p.R399T 0.31 tolerated(0.33) benign(0.01) TCGA-DK-A1AC-01 11 121174160 121174160 G C SC5D Missense_Mutation p.D26H 0.33 deleterious(0.05) possibly_damaging(0.491) TCGA-DK-A1AC-01 11 121460047 121460047 G A SORL1 Nonsense_Mutation p.W1342* 0.31 TCGA-DK-A1AC-01 11 126215464 126215464 G A DCPS Missense_Mutation p.D324N 0.27 tolerated(0.26) benign(0) TCGA-DK-A1AC-01 11 1276623 1276623 G A MUC5B Missense_Mutation p.E5301K 0.44 unknown(0) TCGA-DK-A1AC-01 11 128709337 128709337 G A KCNJ1 Missense_Mutation p.L287F 0.51 deleterious(0.05) benign(0.171) TCGA-DK-A1AC-01 11 128936684 128936684 C T ARHGAP32 Missense_Mutation p.R190Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 11 130278816 130278816 C G ADAMTS8 Missense_Mutation p.Q590H 0.23 deleterious(0.01) probably_damaging(0.928) TCGA-DK-A1AC-01 11 130785628 130785628 G A SNX19 Silent p.L69L 0.28 TCGA-DK-A1AC-01 11 134014688 134014688 G A JAM3 Silent p.V137V 0.28 TCGA-DK-A1AC-01 11 134214971 134214971 C A GLB1L2 Missense_Mutation p.L133M 0.27 deleterious(0) probably_damaging(0.994) TCGA-DK-A1AC-01 11 14526600 14526600 C A PSMA1 3'Flank 0.17 TCGA-DK-A1AC-01 11 16838617 16838617 G C PLEKHA7 Missense_Mutation p.F532L 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A1AC-01 11 17121480 17121480 G C PIK3C2A Missense_Mutation p.Q1349E 0.19 tolerated(0.75) benign(0.004) TCGA-DK-A1AC-01 11 18253209 18253209 C T SAA4 Missense_Mutation p.R78H 0.15 deleterious(0) benign(0.005) TCGA-DK-A1AC-01 11 1856335 1856335 G A SYT8 Silent p.K14K 0.15 TCGA-DK-A1AC-01 11 1856355 1856355 C G SYT8 Missense_Mutation p.S21C 0.11 deleterious(0.01) benign(0.187) TCGA-DK-A1AC-01 11 1856543 1856543 A C SYT8 Missense_Mutation p.I52L 0.32 deleterious(0.04) benign(0.053) TCGA-DK-A1AC-01 11 19204293 19204293 A T CSRP3 Missense_Mutation p.V170D 0.27 tolerated(0.32) probably_damaging(0.999) TCGA-DK-A1AC-01 11 20621143 20621143 C G SLC6A5 5'UTR 0.31 TCGA-DK-A1AC-01 11 22384329 22384329 C T SLC17A6 Missense_Mutation p.L236F 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-DK-A1AC-01 11 22646239 22646239 G A FANCF Missense_Mutation p.S373F 0.44 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-DK-A1AC-01 11 22707331 22707331 C T GAS2 Missense_Mutation p.T88I 0.48 tolerated(0.22) benign(0.002) TCGA-DK-A1AC-01 11 25004745 25004745 C A LUZP2 Missense_Mutation p.P224H 0.50 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 11 26465320 26465320 G A ANO3 Missense_Mutation p.E84K 0.27 tolerated_low_confidence(0.78) benign(0.001) TCGA-DK-A1AC-01 11 32624047 32624047 C T EIF3M 3'UTR 0.71 TCGA-DK-A1AC-01 11 34167693 34167693 G C NAT10 Missense_Mutation p.R1011T 0.16 tolerated(0.14) benign(0.005) TCGA-DK-A1AC-01 11 34680084 34680084 G A EHF Silent p.P226P 0.60 TCGA-DK-A1AC-01 11 3707310 3707310 G C NUP98 Silent p.L1523L 0.16 TCGA-DK-A1AC-01 11 45889168 45889168 G C CRY2 Missense_Mutation p.W270C 0.25 deleterious(0) possibly_damaging(0.817) TCGA-DK-A1AC-01 11 46563761 46563761 G A AMBRA1 Silent p.V512V 0.23 TCGA-DK-A1AC-01 11 4661061 4661061 C G OR51D1 Nonsense_Mutation p.S14* 0.17 TCGA-DK-A1AC-01 11 46749600 46749600 C T F2 Silent p.L395L 0.25 TCGA-DK-A1AC-01 11 46890629 46890629 C T LRP4 Missense_Mutation p.D1583N 0.38 tolerated(0.15) benign(0.171) TCGA-DK-A1AC-01 11 47354825 47354825 G A MYBPC3 Silent p.L1084L 0.88 TCGA-DK-A1AC-01 11 47433961 47433961 G A SLC39A13 Silent p.L160L 0.35 TCGA-DK-A1AC-01 11 47721019 47721019 C T AGBL2 Missense_Mutation p.V225I 0.22 tolerated(0.15) benign(0.033) TCGA-DK-A1AC-01 11 5020915 5020915 G C OR51L1 Missense_Mutation p.E235Q 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-DK-A1AC-01 11 5173165 5173165 C G OR52A1 Missense_Mutation p.Q145H 0.31 tolerated(0.27) benign(0.005) TCGA-DK-A1AC-01 11 533785 533785 C T HRAS Missense_Mutation p.E91K 0.37 tolerated(0.05) benign(0.16) TCGA-DK-A1AC-01 11 55904807 55904807 G C OR8J3 Missense_Mutation p.L130V 0.18 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 11 56000467 56000467 G C OR5T2 Missense_Mutation p.I65M 0.39 tolerated(0.06) benign(0.062) TCGA-DK-A1AC-01 11 56237065 56237065 G A OR5M3 Silent p.I303I 0.40 TCGA-DK-A1AC-01 11 56237767 56237767 C T OR5M3 Silent p.V69V 0.38 TCGA-DK-A1AC-01 11 5624476 5624476 G A TRIM6-TRIM34 Silent p.R6R 0.37 TCGA-DK-A1AC-01 11 5624860 5624860 C G TRIM6-TRIM34 Silent p.L134L 0.38 TCGA-DK-A1AC-01 11 563424 563424 C T RASSF7 Missense_Mutation p.S327F 0.26 deleterious_low_confidence(0.01) benign(0.086) TCGA-DK-A1AC-01 11 57243799 57243799 C T RTN4RL2 Silent p.L226L 0.57 TCGA-DK-A1AC-01 11 59343972 59343972 G C OSBP 3'UTR 0.35 TCGA-DK-A1AC-01 11 597514 597514 G A PHRF1 Missense_Mutation p.E280K 0.18 deleterious(0) benign(0.366) TCGA-DK-A1AC-01 11 59856269 59856269 C T MS4A2 Missense_Mutation p.L11F 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A1AC-01 11 60164085 60164085 C T MS4A14 Missense_Mutation p.H12Y 0.30 deleterious(0.02) possibly_damaging(0.854) TCGA-DK-A1AC-01 11 60781007 60781007 C T CD6 Silent p.F421F 0.24 TCGA-DK-A1AC-01 11 61067688 61067688 C T DDB1 Missense_Mutation p.D1115N 0.25 deleterious(0.03) benign(0.012) TCGA-DK-A1AC-01 11 617418 617418 T A CDHR5 Missense_Mutation p.E824V 0.24 tolerated(0.05) unknown(0) TCGA-DK-A1AC-01 11 617419 617419 C T CDHR5 Missense_Mutation p.E824K 0.25 tolerated(0.17) unknown(0) TCGA-DK-A1AC-01 11 61981299 61981307 TGATTGCTA GT SCGB2A1 3'UTR 0.43 TCGA-DK-A1AC-01 11 62297473 62297473 T C AHNAK Silent p.T1472T 0.49 TCGA-DK-A1AC-01 11 62372641 62372641 G C EML3 Silent p.L642L 0.20 TCGA-DK-A1AC-01 11 62400737 62400737 C T GANAB Missense_Mutation p.E235K 0.04 tolerated(0.3) benign(0.272) TCGA-DK-A1AC-01 11 62406471 62406471 C T GANAB Missense_Mutation p.D122N 0.40 deleterious(0.03) benign(0.224) TCGA-DK-A1AC-01 11 62496309 62496309 T C TTC9C 5'UTR 0.20 TCGA-DK-A1AC-01 11 62519909 62519909 C A ZBTB3 Missense_Mutation p.A460S 0.36 tolerated(0.49) benign(0.011) TCGA-DK-A1AC-01 11 62563940 62563940 G C NXF1 Missense_Mutation p.N426K 0.08 deleterious(0.01) benign(0.098) TCGA-DK-A1AC-01 11 62767306 62767306 C T SLC22A8 Missense_Mutation p.R149H 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 11 63668428 63668428 G A MARK2 Splice_Site p.X330_splice 0.46 TCGA-DK-A1AC-01 11 64054074 64054074 G A GPR137 Silent p.L84L 0.25 TCGA-DK-A1AC-01 11 64067112 64067112 A C KCNK4 Silent p.R366R 0.15 TCGA-DK-A1AC-01 11 64084577 64084577 C T TRMT112 Missense_Mutation p.E75K 0.51 tolerated(0.17) benign(0.068) TCGA-DK-A1AC-01 11 64138842 64138842 A T RPS6KA4 Missense_Mutation p.S737C 0.15 deleterious(0.02) possibly_damaging(0.838) TCGA-DK-A1AC-01 11 64536954 64536954 G A SF1 Missense_Mutation p.L328F 0.37 deleterious(0.02) probably_damaging(0.952) TCGA-DK-A1AC-01 11 64571923 64571923 C T MEN1 Silent p.S577S 0.48 TCGA-DK-A1AC-01 11 64577195 64577195 G A MEN1 Silent p.L129L 0.34 TCGA-DK-A1AC-01 11 64879095 64879095 C T VPS51 3'UTR 0.33 TCGA-DK-A1AC-01 11 65147003 65147003 G A SLC25A45 Silent p.F61F 0.28 TCGA-DK-A1AC-01 11 65161130 65161130 G A FRMD8 Missense_Mutation p.D114N 0.22 tolerated(0.2) benign(0.005) TCGA-DK-A1AC-01 11 65270172 65270172 G A MALAT1 RNA 0.47 TCGA-DK-A1AC-01 11 65351709 65351709 C T EHBP1L1 Intron 0.35 TCGA-DK-A1AC-01 11 65401671 65401671 G A PCNXL3 Silent p.L1515L 0.18 TCGA-DK-A1AC-01 11 65812872 65812872 G A GAL3ST3 Silent p.L5L 0.09 TCGA-DK-A1AC-01 11 66099733 66099733 C T RIN1 3'UTR 0.32 TCGA-DK-A1AC-01 11 66099752 66099752 C G RIN1 Missense_Mutation p.E783Q 0.30 deleterious_low_confidence(0.01) benign(0.403) TCGA-DK-A1AC-01 11 66099842 66099842 C G RIN1 Missense_Mutation p.E753Q 0.26 tolerated_low_confidence(0.09) benign(0.116) TCGA-DK-A1AC-01 11 66192561 66192561 G A NPAS4 Missense_Mutation p.E734K 0.17 tolerated(0.31) benign(0.004) TCGA-DK-A1AC-01 11 66291352 66291352 C G BBS1 Missense_Mutation p.P370R 0.09 tolerated(0.16) benign(0.281) TCGA-DK-A1AC-01 11 6632638 6632638 C T TAF10 Missense_Mutation p.E145K 0.53 deleterious(0.02) possibly_damaging(0.688) TCGA-DK-A1AC-01 11 6632654 6632654 C T TAF10 Silent p.L139L 0.56 TCGA-DK-A1AC-01 11 6648801 6648801 C G DCHS1 Silent p.L1823L 0.32 TCGA-DK-A1AC-01 11 6661224 6661224 C T DCHS1 Missense_Mutation p.E541K 0.25 tolerated(0.56) possibly_damaging(0.593) TCGA-DK-A1AC-01 11 6661225 6661225 C A DCHS1 Missense_Mutation p.L540F 0.27 deleterious(0.04) benign(0.17) TCGA-DK-A1AC-01 11 6661230 6661230 C T DCHS1 Missense_Mutation p.E539K 0.26 deleterious(0) probably_damaging(0.955) TCGA-DK-A1AC-01 11 6704022 6704022 C T MRPL17 Missense_Mutation p.D67N 0.72 tolerated(0.09) possibly_damaging(0.804) TCGA-DK-A1AC-01 11 67051768 67051768 C T ADRBK1 Silent p.F526F 0.13 TCGA-DK-A1AC-01 11 67209050 67209050 G A CORO1B Intron 0.18 TCGA-DK-A1AC-01 11 68363635 68363635 G A PPP6R3 Missense_Mutation p.E663K 0.50 tolerated(0.47) benign(0.419) TCGA-DK-A1AC-01 11 68527743 68527743 C G CPT1A Missense_Mutation p.D698H 0.48 deleterious(0.02) probably_damaging(0.968) TCGA-DK-A1AC-01 11 68747724 68747724 G A MRGPRD Silent p.L244L 0.41 TCGA-DK-A1AC-01 11 69456023 69456023 G C CCND1 5'UTR 0.17 TCGA-DK-A1AC-01 11 69458749 69458749 C T CCND1 Silent p.L188L 0.52 TCGA-DK-A1AC-01 11 702971 702971 G A TMEM80 Missense_Mutation p.E110K 0.20 tolerated(0.19) probably_damaging(0.999) TCGA-DK-A1AC-01 11 703075 703075 C T TMEM80 Silent p.L144L 0.14 TCGA-DK-A1AC-01 11 73796738 73796738 C T C2CD3 Missense_Mutation p.E1279K 0.32 deleterious(0) probably_damaging(0.985) TCGA-DK-A1AC-01 11 74800029 74800029 A G OR2AT4 Missense_Mutation p.S244P 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-DK-A1AC-01 11 7509610 7509610 G A OLFML1 Missense_Mutation p.E128K 0.29 tolerated(0.18) benign(0.014) TCGA-DK-A1AC-01 11 76255317 76255317 C T C11orf30 Silent p.H908H 0.28 TCGA-DK-A1AC-01 11 77301461 77301461 G A AQP11 Missense_Mutation p.G142S 0.40 tolerated(0.09) benign(0.14) TCGA-DK-A1AC-01 11 77301511 77301511 C T AQP11 Silent p.P158P 0.35 TCGA-DK-A1AC-01 11 78399156 78399156 C T TENM4 Missense_Mutation p.D1735N 0.24 tolerated(0.43) benign(0.019) TCGA-DK-A1AC-01 11 8014480 8014480 G A EIF3F Missense_Mutation p.E188K 0.57 deleterious(0.01) probably_damaging(0.946) TCGA-DK-A1AC-01 11 82625788 82625788 G A C11orf82 Missense_Mutation p.R3K 0.17 tolerated(0.29) benign(0.038) TCGA-DK-A1AC-01 11 82877677 82877677 G A PCF11 Missense_Mutation p.E580K 0.17 tolerated(0.1) benign(0.083) TCGA-DK-A1AC-01 11 82877695 82877695 G A PCF11 Missense_Mutation p.E586K 0.57 tolerated(0.13) benign(0.01) TCGA-DK-A1AC-01 11 85396454 85396454 G A CCDC89 Silent p.H240H 0.15 TCGA-DK-A1AC-01 11 85989320 85989320 C T EED Intron 0.11 TCGA-DK-A1AC-01 11 86048553 86048553 C T C11orf73 Missense_Mutation p.S134L 0.13 deleterious(0.03) benign(0.122) TCGA-DK-A1AC-01 11 9088303 9088303 C A SCUBE2 Missense_Mutation p.G234V 0.60 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 11 93464163 93464163 G A KIAA1731 3'Flank 0.38 TCGA-DK-A1AC-01 11 93796691 93796691 G A HEPHL1 Missense_Mutation p.G145R 0.46 tolerated(0.1) probably_damaging(0.914) TCGA-DK-A1AC-01 11 93796692 93796692 G A HEPHL1 Missense_Mutation p.G145E 0.46 tolerated(0.13) probably_damaging(0.996) TCGA-DK-A1AC-01 11 93808405 93808405 G A HEPHL1 Missense_Mutation p.E524K 0.33 tolerated(0.41) benign(0.12) TCGA-DK-A1AC-01 11 94113882 94113882 G A GPR83 Silent p.F235F 0.19 TCGA-DK-A1AC-01 11 94113903 94113903 G T GPR83 Missense_Mutation p.F228L 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-DK-A1AC-01 11 9424908 9424908 G C IPO7 Silent p.V52V 0.26 TCGA-DK-A1AC-01 11 9597434 9597434 G A WEE1 Splice_Site p.X193_splice 0.15 TCGA-DK-A1AC-01 11 9598771 9598771 G A WEE1 Missense_Mutation p.E368K 0.15 deleterious(0.01) benign(0.038) TCGA-DK-A1AC-01 12 100489579 100489579 G C UHRF1BP1L Missense_Mutation p.L236V 0.25 deleterious(0.01) probably_damaging(0.931) TCGA-DK-A1AC-01 12 101584349 101584349 T C SLC5A8 Missense_Mutation p.T244A 0.23 deleterious(0) probably_damaging(0.984) TCGA-DK-A1AC-01 12 110318108 110318108 G A GLTP Silent p.L24L 0.35 TCGA-DK-A1AC-01 12 110370668 110370668 G C GIT2 3'UTR 0.23 TCGA-DK-A1AC-01 12 110927993 110927993 G A FAM216A 3'UTR 0.44 TCGA-DK-A1AC-01 12 110956540 110956540 C G RAD9B Missense_Mutation p.Q219E 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-DK-A1AC-01 12 111290763 111290763 C T CCDC63 Missense_Mutation p.S2F 0.45 deleterious_low_confidence(0.01) benign(0.136) TCGA-DK-A1AC-01 12 113448315 113448315 G C OAS2 3'UTR 0.20 TCGA-DK-A1AC-01 12 113531504 113531504 G C DTX1 Missense_Mutation p.K388N 0.39 tolerated(0.05) probably_damaging(0.917) TCGA-DK-A1AC-01 12 113532921 113532921 G A DTX1 Missense_Mutation p.M487I 0.38 deleterious(0) possibly_damaging(0.632) TCGA-DK-A1AC-01 12 113737681 113737681 G A SLC8B1 Silent p.L552L 0.41 TCGA-DK-A1AC-01 12 115120680 115120680 G A TBX3 Missense_Mutation p.A109V 0.39 deleterious(0.01) possibly_damaging(0.822) TCGA-DK-A1AC-01 12 116418744 116418744 C G MED13L Splice_Site p.X1726_splice 0.28 TCGA-DK-A1AC-01 12 118511775 118511775 C T VSIG10 Silent p.E316E 0.40 TCGA-DK-A1AC-01 12 119954484 119954484 G A CCDC60 Missense_Mutation p.E314K 0.20 deleterious(0.05) benign(0.397) TCGA-DK-A1AC-01 12 120876184 120876184 C G AL021546.6 Missense_Mutation p.R13G 0.28 deleterious_low_confidence(0) benign(0.097) TCGA-DK-A1AC-01 12 120903591 120903591 C G SRSF9 Splice_Site p.X63_splice 0.32 TCGA-DK-A1AC-01 12 120995412 120995412 G A RNF10 Silent p.K298K 0.16 TCGA-DK-A1AC-01 12 121615003 121615003 C T P2RX7 Silent p.S342S 0.42 TCGA-DK-A1AC-01 12 122018015 122018015 G T KDM2B Intron 0.21 TCGA-DK-A1AC-01 12 122404858 122404858 C T WDR66 Intron 0.15 TCGA-DK-A1AC-01 12 122817644 122817644 C G CLIP1 Silent p.L919L 0.32 TCGA-DK-A1AC-01 12 123089504 123089504 C G KNTC1 Silent p.L1752L 0.42 TCGA-DK-A1AC-01 12 123214722 123214722 G A HCAR1 Silent p.F55F 0.56 TCGA-DK-A1AC-01 12 123868753 123868753 G A SETD8 Missense_Mutation p.R3K 0.26 tolerated_low_confidence(0.13) benign(0) TCGA-DK-A1AC-01 12 124104609 124104609 G T DDX55 Missense_Mutation p.E575D 0.19 tolerated(0.75) benign(0.029) TCGA-DK-A1AC-01 12 124979754 124979754 G A NCOR2 Missense_Mutation p.T15I 0.16 unknown(0) TCGA-DK-A1AC-01 12 125398075 125398075 C T UBC Silent p.V81V 0.39 TCGA-DK-A1AC-01 12 12871770 12871770 C T CDKN1B Nonsense_Mutation p.Q163* 0.68 TCGA-DK-A1AC-01 12 132322757 132322757 C T MMP17 Silent p.F59F 0.48 TCGA-DK-A1AC-01 12 132380364 132380364 T C ULK1 Missense_Mutation p.F81L 0.11 tolerated(0.09) benign(0.015) TCGA-DK-A1AC-01 12 133198607 133198607 G A P2RX2 3'Flank 0.39 TCGA-DK-A1AC-01 12 133226443 133226443 C T POLE Silent p.P1205P 0.24 TCGA-DK-A1AC-01 12 133294683 133294683 C T PGAM5 Silent p.N232N 0.15 TCGA-DK-A1AC-01 12 133682468 133682468 C T ZNF140 Missense_Mutation p.S202L 0.17 deleterious(0.03) possibly_damaging(0.86) TCGA-DK-A1AC-01 12 15747986 15747986 G A PTPRO 3'UTR 0.08 TCGA-DK-A1AC-01 12 20864431 20864431 C A SLCO1C1 Silent p.S172S 0.34 TCGA-DK-A1AC-01 12 26277470 26277470 C T BHLHE41 Missense_Mutation p.M36I 0.63 tolerated(0.24) benign(0.005) TCGA-DK-A1AC-01 12 26943129 26943129 C T ITPR2 Missense_Mutation p.E42K 0.26 tolerated(0.51) benign(0.024) TCGA-DK-A1AC-01 12 29659735 29659735 C T TMTC1 3'UTR 0.76 TCGA-DK-A1AC-01 12 2968485 2968485 C T FOXM1 Silent p.E575E 0.39 TCGA-DK-A1AC-01 12 2994524 2994524 C T RHNO1 5'UTR 0.57 TCGA-DK-A1AC-01 12 31240903 31240903 G A DDX11 Missense_Mutation p.E224K 0.29 deleterious(0.02) possibly_damaging(0.883) TCGA-DK-A1AC-01 12 33592424 33592424 G A SYT10 Silent p.L12L 0.31 TCGA-DK-A1AC-01 12 39947845 39947845 C T ABCD2 Missense_Mutation p.E698K 0.68 tolerated(0.06) probably_damaging(0.928) TCGA-DK-A1AC-01 12 40749951 40749951 G A LRRK2 Missense_Mutation p.D2269N 0.28 tolerated(0.49) benign(0.015) TCGA-DK-A1AC-01 12 45781986 45781986 T C ANO6 Missense_Mutation p.L424P 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 12 46582754 46582754 C T SLC38A1 Silent p.%3D 0.21 TCGA-DK-A1AC-01 12 49391911 49391911 G A DDN Nonsense_Mutation p.Q250* 0.16 TCGA-DK-A1AC-01 12 49434778 49434778 C T KMT2D Missense_Mutation p.E2259K 0.35 possibly_damaging(0.713) TCGA-DK-A1AC-01 12 49445264 49445264 G C KMT2D Silent p.L734L 0.17 TCGA-DK-A1AC-01 12 49689233 49689233 G A PRPH Missense_Mutation p.E84K 0.40 tolerated(0.07) possibly_damaging(0.689) TCGA-DK-A1AC-01 12 50036100 50036100 G A PRPF40B Missense_Mutation p.R656Q 0.47 deleterious(0.01) possibly_damaging(0.847) TCGA-DK-A1AC-01 12 50037941 50037941 G A PRPF40B Missense_Mutation p.R882Q 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.785) TCGA-DK-A1AC-01 12 51130885 51130885 C G DIP2B Missense_Mutation p.L1390V 0.21 tolerated(0.09) possibly_damaging(0.895) TCGA-DK-A1AC-01 12 51450271 51450271 C T LETMD1 Nonsense_Mutation p.Q314* 0.26 TCGA-DK-A1AC-01 12 51584140 51584140 C T POU6F1 Missense_Mutation p.E266K 0.20 deleterious(0.02) benign(0.009) TCGA-DK-A1AC-01 12 52565086 52565086 C T KRT80 3'UTR 0.34 TCGA-DK-A1AC-01 12 52565091 52565091 C T KRT80 3'UTR 0.34 TCGA-DK-A1AC-01 12 52827960 52827960 C G KRT75 Silent p.G43G 0.13 TCGA-DK-A1AC-01 12 52986275 52986301 CCTGGGAGCACATGATAGTCAAGCCGC - KRT72 Splice_Site p.X235_splice 0.36 TCGA-DK-A1AC-01 12 53185189 53185189 T C KRT3 Missense_Mutation p.I446V 0.44 tolerated(0.11) possibly_damaging(0.557) TCGA-DK-A1AC-01 12 53565116 53565116 C G CSAD Silent p.S214S 0.38 TCGA-DK-A1AC-01 12 53565270 53565270 C G CSAD Intron 0.54 TCGA-DK-A1AC-01 12 53607344 53607344 G A RARG Silent p.L318L 0.46 TCGA-DK-A1AC-01 12 53609125 53609125 G A RARG Nonsense_Mutation p.Q143* 0.27 TCGA-DK-A1AC-01 12 53776403 53776403 C T SP1 Silent p.I224I 0.37 TCGA-DK-A1AC-01 12 53861124 53861124 G A PCBP2 Intron 0.51 TCGA-DK-A1AC-01 12 54366988 54366988 C G HOXC11 5'UTR 0.54 TCGA-DK-A1AC-01 12 55846762 55846762 C T OR6C2 Silent p.F255F 0.16 TCGA-DK-A1AC-01 12 56230763 56230763 G A MMP19 3'UTR 0.46 TCGA-DK-A1AC-01 12 56397731 56397731 G C SUOX Silent p.L186L 0.49 TCGA-DK-A1AC-01 12 56531079 56531079 G A ESYT1 Silent p.E630E 0.39 TCGA-DK-A1AC-01 12 56551553 56551553 G A MYL6B 3'UTR 0.48 TCGA-DK-A1AC-01 12 56651667 56651667 C T ANKRD52 Missense_Mutation p.R19Q 0.32 tolerated(0.32) benign(0.24) TCGA-DK-A1AC-01 12 56716974 56716974 C T PAN2 Missense_Mutation p.E793K 0.40 tolerated(0.4) benign(0.01) TCGA-DK-A1AC-01 12 56720612 56720612 C T PAN2 Missense_Mutation p.E351K 0.20 tolerated(0.06) benign(0.055) TCGA-DK-A1AC-01 12 56722297 56722297 G A PAN2 Silent p.L137L 0.31 TCGA-DK-A1AC-01 12 57108199 57108199 C T NACA Missense_Mutation p.E771K 0.20 deleterious_low_confidence(0.02) benign(0.159) TCGA-DK-A1AC-01 12 57111049 57111049 C T NACA Intron 0.51 TCGA-DK-A1AC-01 12 57328012 57328012 G A SDR9C7 Missense_Mutation p.R12C 0.15 deleterious(0.04) benign(0.004) TCGA-DK-A1AC-01 12 57493598 57493598 A T STAT6 Missense_Mutation p.S566T 0.33 deleterious(0) probably_damaging(0.985) TCGA-DK-A1AC-01 12 57850047 57850047 C T INHBE Missense_Mutation p.L157F 0.36 tolerated(0.1) benign(0.011) TCGA-DK-A1AC-01 12 57858641 57858641 G A GLI1 Missense_Mutation p.G127S 0.20 tolerated(0.48) benign(0.04) TCGA-DK-A1AC-01 12 57926780 57926780 C T DCTN2 Missense_Mutation p.G259E 0.30 tolerated(0.2) benign(0.348) TCGA-DK-A1AC-01 12 57994197 57994197 G C PIP4K2C Missense_Mutation p.E264Q 0.19 deleterious(0.04) probably_damaging(0.93) TCGA-DK-A1AC-01 12 58127921 58127921 G A AGAP2 Silent p.F479F 0.53 TCGA-DK-A1AC-01 12 58152013 58152013 G T MARCH9 Missense_Mutation p.K212N 0.27 deleterious(0.04) probably_damaging(0.954) TCGA-DK-A1AC-01 12 58191766 58191783 CAGAGAGGTAATTCTAAG - AVIL Splice_Site p.X783_splice 0.31 TCGA-DK-A1AC-01 12 5936945 5936945 G C ANO2 Missense_Mutation p.N290K 0.38 tolerated(1) benign(0.005) TCGA-DK-A1AC-01 12 62104123 62104123 G C FAM19A2 3'UTR 0.41 TCGA-DK-A1AC-01 12 62861092 62861092 C T MON2 Silent p.V35V 0.22 TCGA-DK-A1AC-01 12 6457910 6457910 C T SCNN1A Missense_Mutation p.E597K 0.35 deleterious(0) probably_damaging(0.994) TCGA-DK-A1AC-01 12 65564632 65564632 C T LEMD3 Missense_Mutation p.S419F 0.22 deleterious(0.01) benign(0.125) TCGA-DK-A1AC-01 12 662717 662717 A G B4GALNT3 Missense_Mutation p.Q543R 0.59 tolerated(0.55) benign(0) TCGA-DK-A1AC-01 12 69158705 69158705 G A SLC35E3 3'UTR 0.37 TCGA-DK-A1AC-01 12 6926360 6926360 G T CD4 Silent p.L340L 0.31 TCGA-DK-A1AC-01 12 70760748 70760748 C T KCNMB4 Silent p.G78G 0.21 TCGA-DK-A1AC-01 12 7078670 7078670 C A PHB2 Missense_Mutation p.G95C 0.29 deleterious(0) probably_damaging(0.988) TCGA-DK-A1AC-01 12 72080342 72080342 G A TMEM19 5'UTR 0.14 TCGA-DK-A1AC-01 12 76443477 76443477 C G NAP1L1 Intron 0.32 TCGA-DK-A1AC-01 12 76788453 76788453 C T OSBPL8 Silent p.L243L 0.44 TCGA-DK-A1AC-01 12 78513043 78513043 G C NAV3 Missense_Mutation p.E1023Q 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-DK-A1AC-01 12 78513245 78513245 C T NAV3 Missense_Mutation p.S1090F 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 12 81536974 81536974 C T ACSS3 Missense_Mutation p.S290L 0.82 deleterious(0) probably_damaging(0.926) TCGA-DK-A1AC-01 12 8988871 8988871 G A A2ML1 Missense_Mutation p.E222K 0.23 tolerated(0.89) benign(0.026) TCGA-DK-A1AC-01 12 91372040 91372040 C G EPYC Splice_Site p.X56_splice 0.33 TCGA-DK-A1AC-01 12 91445283 91445283 G A KERA Missense_Mutation p.S300F 0.44 deleterious(0.01) possibly_damaging(0.519) TCGA-DK-A1AC-01 12 93804976 93804976 C T UBE2N Missense_Mutation p.D44N 0.36 tolerated(0.06) possibly_damaging(0.614) TCGA-DK-A1AC-01 12 96284667 96284667 C G CCDC38 Missense_Mutation p.E272Q 0.36 tolerated(0.28) benign(0.156) TCGA-DK-A1AC-01 12 96382019 96382019 C T HAL Splice_Site p.X286_splice 0.40 TCGA-DK-A1AC-01 12 97051853 97051853 C T C12orf55 Missense_Mutation p.S1765F 0.21 tolerated(0.13) possibly_damaging(0.45) TCGA-DK-A1AC-01 12 98995210 98995211 TA - SLC25A3 Frame_Shift_Del p.I332Lfs*2 0.34 TCGA-DK-A1AC-01 12 99019906 99019906 C T IKBIP Silent p.L312L 0.18 TCGA-DK-A1AC-01 12 99548326 99548326 C T ANKS1B Intron 0.21 TCGA-DK-A1AC-01 13 107822773 107822773 C A FAM155A 3'UTR 0.68 TCGA-DK-A1AC-01 13 113508799 113508799 C T ATP11A Missense_Mutation p.T733M 0.42 deleterious(0.04) probably_damaging(0.915) TCGA-DK-A1AC-01 13 113976673 113976673 C T LAMP1 Silent p.L397L 0.69 TCGA-DK-A1AC-01 13 20425496 20425496 A G ZMYM5 Silent p.P195P 0.20 TCGA-DK-A1AC-01 13 21371070 21371070 C T XPO4 Missense_Mutation p.E817K 0.21 tolerated(0.38) benign(0.186) TCGA-DK-A1AC-01 13 21751241 21751241 C T MRP63 Silent p.H62H 0.16 TCGA-DK-A1AC-01 13 24411850 24411853 CTCC TTT MIPEP Frame_Shift_Del p.G461Kfs*8 0.18 TCGA-DK-A1AC-01 13 30341760 30341760 G C UBL3 Missense_Mutation p.S99C 0.46 deleterious(0.01) possibly_damaging(0.841) TCGA-DK-A1AC-01 13 31211905 31211905 C T USPL1 Missense_Mutation p.S298L 0.26 tolerated(0.1) possibly_damaging(0.804) TCGA-DK-A1AC-01 13 33018001 33018001 T C N4BP2L2 Missense_Mutation p.K225E 0.36 tolerated(0.79) benign(0.002) TCGA-DK-A1AC-01 13 36686315 36686315 C G DCLK1 Missense_Mutation p.K138N 0.33 deleterious(0) unknown(0) TCGA-DK-A1AC-01 13 36909157 36909157 C G SPG20 Splice_Site p.X270_splice 0.38 TCGA-DK-A1AC-01 13 45147906 45147906 G A TSC22D1 Nonsense_Mutation p.Q769* 0.23 TCGA-DK-A1AC-01 13 45149590 45149590 C T TSC22D1 Silent p.Q207Q 0.49 TCGA-DK-A1AC-01 13 45768414 45768414 C T KCTD4 Missense_Mutation p.E97K 0.40 tolerated(0.37) benign(0.376) TCGA-DK-A1AC-01 13 46701847 46701847 G C LCP1 Missense_Mutation p.S588C 0.61 deleterious(0.02) probably_damaging(0.996) TCGA-DK-A1AC-01 13 48619952 48619952 G C NUDT15 3'UTR 0.23 TCGA-DK-A1AC-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.42 TCGA-DK-A1AC-01 13 49085972 49085972 G A RCBTB2 Silent p.L239L 0.24 TCGA-DK-A1AC-01 13 52548420 52548420 C T ATP7B Silent p.Q312Q 0.30 TCGA-DK-A1AC-01 13 53624514 53624514 C G OLFM4 Missense_Mutation p.Q381E 0.28 deleterious(0.02) possibly_damaging(0.768) TCGA-DK-A1AC-01 13 58208221 58208221 C T PCDH17 Missense_Mutation p.S514L 0.57 deleterious(0.02) possibly_damaging(0.888) TCGA-DK-A1AC-01 13 61985735 61985735 G A PCDH20 Missense_Mutation p.L833F 0.37 deleterious(0.01) probably_damaging(1) TCGA-DK-A1AC-01 13 72134058 72134058 G T DACH1 Silent p.A445A 0.26 TCGA-DK-A1AC-01 13 77459558 77459558 C T KCTD12 Silent p.T242T 0.80 TCGA-DK-A1AC-01 13 77651516 77651516 G A MYCBP2 Silent p.L3793L 0.43 TCGA-DK-A1AC-01 13 93879803 93879803 G A GPC6 Missense_Mutation p.E32K 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-DK-A1AC-01 13 95104879 95104879 T C DCT Missense_Mutation p.N406S 0.59 tolerated_low_confidence(0.35) benign(0.001) TCGA-DK-A1AC-01 14 100192565 100192565 G A CYP46A1 Missense_Mutation p.R435H 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 14 101012852 101012852 C G BEGAIN Silent p.T54T 0.42 TCGA-DK-A1AC-01 14 102510791 102510791 G A DYNC1H1 Missense_Mutation p.D4289N 0.25 benign(0.009) TCGA-DK-A1AC-01 14 102898163 102898163 C T TECPR2 Missense_Mutation p.S372L 0.24 tolerated(0.31) benign(0.001) TCGA-DK-A1AC-01 14 103969477 103969477 G T MARK3 Silent p.L725L 0.29 TCGA-DK-A1AC-01 14 104571063 104571063 C T ASPG Silent p.V347V 0.60 TCGA-DK-A1AC-01 14 105408667 105408667 C T AHNAK2 Missense_Mutation p.G4374E 0.56 possibly_damaging(0.891) TCGA-DK-A1AC-01 14 105618508 105618508 G A JAG2 Silent p.L303L 0.47 TCGA-DK-A1AC-01 14 106091497 106091497 T A IGHG4 Missense_Mutation p.I133F 0.21 deleterious(0) possibly_damaging(0.831) TCGA-DK-A1AC-01 14 106091498 106091498 C T IGHG4 Missense_Mutation p.M132I 0.20 tolerated(0.09) benign(0.05) TCGA-DK-A1AC-01 14 106307448 106307448 C T IGHD Silent p.L197L 0.19 TCGA-DK-A1AC-01 14 20781943 20781943 G C CCNB1IP1 Silent p.L105L 0.22 TCGA-DK-A1AC-01 14 20916914 20916914 G A OSGEP Missense_Mutation p.S205L 0.27 deleterious(0) possibly_damaging(0.615) TCGA-DK-A1AC-01 14 21699232 21699232 C T HNRNPC Splice_Site p.X81_splice 0.32 TCGA-DK-A1AC-01 14 21862166 21862166 C T CHD8 Missense_Mutation p.D1930N 0.37 deleterious(0) probably_damaging(0.989) TCGA-DK-A1AC-01 14 21967731 21967731 C T METTL3 Missense_Mutation p.D453N 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 14 22690301 22690301 G A TRAV35 Missense_Mutation p.R87K 0.34 tolerated(0.4) benign(0.021) TCGA-DK-A1AC-01 14 23021012 23021012 C T AE000662.92 5'Flank 0.23 TCGA-DK-A1AC-01 14 23887435 23887435 C T MYH7 Missense_Mutation p.E1385K 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A1AC-01 14 23940112 23940112 C T NGDN Intron 0.32 TCGA-DK-A1AC-01 14 24036487 24036487 C T AP1G2 Missense_Mutation p.E13K 0.23 tolerated(0.15) benign(0.033) TCGA-DK-A1AC-01 14 24528595 24528595 G A LRRC16B Missense_Mutation p.M581I 0.37 deleterious(0.04) benign(0.387) TCGA-DK-A1AC-01 14 24532014 24532014 G A LRRC16B Missense_Mutation p.D889N 0.15 tolerated(0.11) benign(0.091) TCGA-DK-A1AC-01 14 24617580 24617580 G A RNF31 Silent p.L151L 0.48 TCGA-DK-A1AC-01 14 24641766 24641766 T A REC8 Missense_Mutation p.F2Y 0.59 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 14 24656644 24656644 G C IPO4 Missense_Mutation p.L184V 0.20 deleterious(0.02) benign(0.049) TCGA-DK-A1AC-01 14 24656660 24656660 G C IPO4 Missense_Mutation p.F178L 0.20 deleterious(0.01) benign(0.096) TCGA-DK-A1AC-01 14 24656970 24656970 G T IPO4 Nonsense_Mutation p.S104* 0.33 TCGA-DK-A1AC-01 14 24658431 24658431 C T TM9SF1 3'UTR 0.43 TCGA-DK-A1AC-01 14 24659547 24659547 G T TM9SF1 Intron 0.13 TCGA-DK-A1AC-01 14 24731453 24731453 G A TGM1 Missense_Mutation p.R36C 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.684) TCGA-DK-A1AC-01 14 24772312 24772312 C T NOP9 Silent p.V392V 0.29 TCGA-DK-A1AC-01 14 24883866 24883866 G A NYNRIN Missense_Mutation p.V971I 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-DK-A1AC-01 14 24884334 24884334 G A NYNRIN Missense_Mutation p.D1127N 0.46 deleterious(0) possibly_damaging(0.84) TCGA-DK-A1AC-01 14 27064680 27064680 A G NOVA1 Silent p.I72I 0.16 TCGA-DK-A1AC-01 14 31602842 31602842 C G HECTD1 Missense_Mutation p.E1206D 0.21 tolerated(0.16) benign(0.206) TCGA-DK-A1AC-01 14 31917208 31917208 G A DTD2 3'UTR 0.27 TCGA-DK-A1AC-01 14 37717025 37717051 TTATTTTAGCTGCAAATCTTGGAGCAA - MIPOL1 Splice_Site 0.21 TCGA-DK-A1AC-01 14 38060825 38060825 C T FOXA1 Silent p.L388L 0.25 TCGA-DK-A1AC-01 14 42356993 42356993 G C LRFN5 Missense_Mutation p.E389Q 0.28 tolerated(0.21) possibly_damaging(0.889) TCGA-DK-A1AC-01 14 45468596 45468596 C G FAM179B Missense_Mutation p.S745C 0.11 deleterious(0) possibly_damaging(0.873) TCGA-DK-A1AC-01 14 45605471 45605471 G A FANCM Silent p.A79A 0.18 TCGA-DK-A1AC-01 14 50238388 50238388 G A KLHDC2 Missense_Mutation p.R77K 0.25 tolerated(0.91) benign(0.011) TCGA-DK-A1AC-01 14 52936858 52936858 C T TXNDC16 Silent p.S505S 0.12 TCGA-DK-A1AC-01 14 55642735 55642735 C T DLGAP5 Missense_Mutation p.D351N 0.23 tolerated(0.23) benign(0.411) TCGA-DK-A1AC-01 14 57735984 57735984 C T AP5M1 5'UTR 0.23 TCGA-DK-A1AC-01 14 57960436 57960436 C T C14orf105 5'UTR 0.34 TCGA-DK-A1AC-01 14 58047974 58047974 C A SLC35F4 Missense_Mutation p.L291F 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 14 61285476 61285476 C T MNAT1 Nonsense_Mutation p.Q200* 0.24 TCGA-DK-A1AC-01 14 64608747 64608747 G A SYNE2 Missense_Mutation p.D5083N 0.20 benign(0.031) TCGA-DK-A1AC-01 14 64680937 64680937 C T SYNE2 Missense_Mutation p.S6361F 0.48 probably_damaging(1) TCGA-DK-A1AC-01 14 64685228 64685228 C T SYNE2 Missense_Mutation p.S6552L 0.19 benign(0.209) TCGA-DK-A1AC-01 14 64909033 64909033 C G MTHFD1 Missense_Mutation p.I683M 0.37 deleterious(0) probably_damaging(0.978) TCGA-DK-A1AC-01 14 64989728 64989728 T G ZBTB1 Missense_Mutation p.D502E 0.27 tolerated(0.78) benign(0.004) TCGA-DK-A1AC-01 14 64990098 64990098 G C ZBTB1 Missense_Mutation p.D626H 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A1AC-01 14 65009223 65009223 C T HSPA2 Silent p.I552I 0.32 TCGA-DK-A1AC-01 14 67826524 67826524 C T ATP6V1D 5'UTR 0.31 TCGA-DK-A1AC-01 14 67864415 67864415 G C PLEK2 Silent p.T57T 0.10 TCGA-DK-A1AC-01 14 68114822 68114822 C T ARG2 Missense_Mutation p.P261S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1AC-01 14 68189425 68189425 C A RDH12 Silent p.I22I 0.30 TCGA-DK-A1AC-01 14 71575342 71575342 C T PCNX Missense_Mutation p.S2108F 0.40 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 14 72196839 72196839 G A SIPA1L1 Missense_Mutation p.R1582K 0.29 deleterious(0.01) probably_damaging(0.963) TCGA-DK-A1AC-01 14 73577788 73577788 A T RBM25 Missense_Mutation p.I648F 0.21 benign(0.227) TCGA-DK-A1AC-01 14 76238194 76238194 G C TTLL5 Missense_Mutation p.Q711H 0.42 tolerated(0.1) possibly_damaging(0.873) TCGA-DK-A1AC-01 14 76452101 76452101 C T IFT43 5'Flank 0.26 TCGA-DK-A1AC-01 14 89039256 89039256 G C ZC3H14 Missense_Mutation p.E256Q 0.26 tolerated(0.15) possibly_damaging(0.455) TCGA-DK-A1AC-01 14 91196427 91196427 G A TTC7B Silent p.F230F 0.27 TCGA-DK-A1AC-01 14 91633816 91633816 C T C14orf159 Intron 0.16 TCGA-DK-A1AC-01 14 91791126 91791126 C T CCDC88C Missense_Mutation p.D447N 0.27 tolerated(0.12) probably_damaging(1) TCGA-DK-A1AC-01 14 91791156 91791156 C G CCDC88C Missense_Mutation p.E437Q 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A1AC-01 14 92084066 92084066 C T CATSPERB Missense_Mutation p.E759K 0.46 tolerated(0.31) benign(0.23) TCGA-DK-A1AC-01 14 94512231 94512231 C T OTUB2 Missense_Mutation p.S223F 0.29 deleterious(0) probably_damaging(0.937) TCGA-DK-A1AC-01 14 97313665 97313665 G A VRK1 Missense_Mutation p.D120N 0.25 deleterious(0.02) benign(0.001) TCGA-DK-A1AC-01 15 101115276 101115276 C T LINS Missense_Mutation p.E183K 0.26 tolerated(0.55) benign(0.138) TCGA-DK-A1AC-01 15 101718244 101718244 C T CHSY1 Silent p.L586L 0.25 TCGA-DK-A1AC-01 15 23012428 23012428 G A NIPA2 Missense_Mutation p.S100F 0.36 deleterious(0) probably_damaging(0.954) TCGA-DK-A1AC-01 15 23313237 23313237 G A HERC2P2 RNA 0.41 TCGA-DK-A1AC-01 15 25584354 25584354 G A UBE3A Missense_Mutation p.S853L 0.26 tolerated(0.07) benign(0.033) TCGA-DK-A1AC-01 15 33023246 33023247 - A GREM1 Nonsense_Mutation p.Y119* 0.43 TCGA-DK-A1AC-01 15 33941338 33941338 G T RYR3 Silent p.V1348V 0.19 TCGA-DK-A1AC-01 15 34395021 34395021 G A PGBD4 Missense_Mutation p.D97N 0.51 tolerated(0.32) benign(0.013) TCGA-DK-A1AC-01 15 35189812 35189812 C T AQR Missense_Mutation p.E780K 0.19 tolerated(0.14) benign(0.038) TCGA-DK-A1AC-01 15 35230975 35230975 C T AQR Silent p.Q227Q 0.12 TCGA-DK-A1AC-01 15 39544580 39544580 C G C15orf54 Missense_Mutation p.Q82E 0.21 tolerated_low_confidence(0.06) probably_damaging(0.953) TCGA-DK-A1AC-01 15 40396422 40396422 G A BMF Nonsense_Mutation p.Q138* 0.48 TCGA-DK-A1AC-01 15 40505608 40505608 G A BUB1B Missense_Mutation p.E871K 0.27 deleterious(0) possibly_damaging(0.838) TCGA-DK-A1AC-01 15 40763862 40763862 C G CHST14 Silent p.L150L 0.29 TCGA-DK-A1AC-01 15 40764104 40764104 G A CHST14 Missense_Mutation p.R231Q 0.29 tolerated(0.46) benign(0.053) TCGA-DK-A1AC-01 15 41865267 41865267 C T TYRO3 Missense_Mutation p.S648F 0.54 deleterious(0) probably_damaging(0.969) TCGA-DK-A1AC-01 15 42146360 42146360 G T SPTBN5 Missense_Mutation p.A3221E 0.31 possibly_damaging(0.819) TCGA-DK-A1AC-01 15 43307928 43307928 G A UBR1 Missense_Mutation p.S1056L 0.22 tolerated(0.32) benign(0.001) TCGA-DK-A1AC-01 15 43476562 43476562 G A TMEM62 Silent p.L570L 0.48 TCGA-DK-A1AC-01 15 43489643 43489643 C T EPB42 Missense_Mutation p.E675K 0.43 tolerated(0.69) benign(0.007) TCGA-DK-A1AC-01 15 45386349 45386349 C T DUOX2 Silent p.%3D 0.20 TCGA-DK-A1AC-01 15 45445633 45445633 C T DUOX1 Silent p.L1160L 0.21 TCGA-DK-A1AC-01 15 45460156 45460156 G C SHF Missense_Mutation p.R421G 0.30 deleterious(0) possibly_damaging(0.753) TCGA-DK-A1AC-01 15 49176534 49176534 C A SHC4 Missense_Mutation p.G251C 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 15 52250986 52250986 C G LEO1 Missense_Mutation p.D400H 0.23 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AC-01 15 52416747 52416747 C T GNB5 Missense_Mutation p.E367K 0.23 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 15 52844068 52844068 G A ARPP19 3'UTR 0.26 TCGA-DK-A1AC-01 15 52970307 52970307 C T FAM214A 5'UTR 0.17 TCGA-DK-A1AC-01 15 56665652 56665652 G C TEX9 Missense_Mutation p.E45Q 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A1AC-01 15 57565345 57565345 C T TCF12 Silent p.F621F 0.21 TCGA-DK-A1AC-01 15 58904123 58904123 C T ADAM10 Missense_Mutation p.D527N 0.28 deleterious(0.01) benign(0.007) TCGA-DK-A1AC-01 15 59942969 59942969 G A GTF2A2 Nonsense_Mutation p.Q26* 0.45 TCGA-DK-A1AC-01 15 63850344 63850344 T G USP3 Missense_Mutation p.L164V 0.48 deleterious(0) probably_damaging(0.925) TCGA-DK-A1AC-01 15 64005075 64005075 C G HERC1 Missense_Mutation p.E1495Q 0.30 probably_damaging(0.948) TCGA-DK-A1AC-01 15 64005081 64005081 T G HERC1 Missense_Mutation p.T1493P 0.43 benign(0.003) TCGA-DK-A1AC-01 15 64017671 64017671 G A HERC1 Nonsense_Mutation p.Q1130* 0.19 TCGA-DK-A1AC-01 15 64332447 64332447 G C DAPK2 Nonsense_Mutation p.S5* 0.16 TCGA-DK-A1AC-01 15 64445458 64445458 G A SNX22 Silent p.L93L 0.58 TCGA-DK-A1AC-01 15 65622908 65622908 G A IGDCC3 Missense_Mutation p.S578F 0.41 deleterious(0) probably_damaging(0.964) TCGA-DK-A1AC-01 15 65890802 65890802 C T VWA9 Splice_Site p.X145_splice 0.21 TCGA-DK-A1AC-01 15 67473685 67473685 G A SMAD3 Missense_Mutation p.M255I 0.27 tolerated(0.8) benign(0.001) TCGA-DK-A1AC-01 15 67495178 67495178 G A AAGAB Missense_Mutation p.S310L 0.24 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 15 69080226 69080226 C T ANP32A Silent p.S29S 0.26 TCGA-DK-A1AC-01 15 69327705 69327705 C T NOX5 Silent p.L289L 0.26 TCGA-DK-A1AC-01 15 69721528 69721528 G A KIF23 Missense_Mutation p.E350K 0.73 tolerated(0.08) possibly_damaging(0.771) TCGA-DK-A1AC-01 15 72338155 72338155 G C MYO9A Missense_Mutation p.N250K 0.23 deleterious(0) benign(0.335) TCGA-DK-A1AC-01 15 72492911 72492911 G T PKM Missense_Mutation p.L465M 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 15 72499149 72499149 C T PKM Missense_Mutation p.D354N 0.56 tolerated(0.05) possibly_damaging(0.642) TCGA-DK-A1AC-01 15 72668266 72668266 G A HEXA Silent p.F16F 0.55 TCGA-DK-A1AC-01 15 74468086 74468086 C T ISLR Missense_Mutation p.P296L 0.23 tolerated(0.37) benign(0.003) TCGA-DK-A1AC-01 15 74927761 74927761 G A EDC3 Missense_Mutation p.S394F 0.55 deleterious(0) probably_damaging(0.934) TCGA-DK-A1AC-01 15 75198699 75198699 G A FAM219B Silent p.H74H 0.21 TCGA-DK-A1AC-01 15 75335823 75335823 C T PPCDC Silent p.F59F 0.24 TCGA-DK-A1AC-01 15 75499996 75499996 C G C15orf39 Nonsense_Mutation p.S536* 0.32 TCGA-DK-A1AC-01 15 75668090 75668090 G T SIN3A Missense_Mutation p.F1169L 0.27 tolerated(0.17) benign(0.186) TCGA-DK-A1AC-01 15 78393321 78393321 C T SH2D7 Silent p.I242I 0.35 TCGA-DK-A1AC-01 15 80883951 80883951 C T ARNT2 Missense_Mutation p.S654L 0.30 deleterious_low_confidence(0) benign(0.32) TCGA-DK-A1AC-01 15 82336488 82336488 G A MEX3B Silent p.F241F 0.27 TCGA-DK-A1AC-01 15 85186742 85186742 G A WDR73 Silent p.L366L 0.41 TCGA-DK-A1AC-01 15 85188819 85188819 G A WDR73 Missense_Mutation p.R256W 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 15 86076934 86076934 C G AKAP13 Missense_Mutation p.Q101E 0.26 tolerated(0.05) probably_damaging(0.979) TCGA-DK-A1AC-01 15 86087153 86087153 G A AKAP13 Missense_Mutation p.R210Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AC-01 15 89182687 89182687 C T ISG20 Silent p.L30L 0.31 TCGA-DK-A1AC-01 15 89401276 89401276 G A ACAN Silent p.T1820T 0.16 TCGA-DK-A1AC-01 15 89402471 89402471 G A ACAN Missense_Mutation p.E2219K 0.36 deleterious(0.01) probably_damaging(0.926) TCGA-DK-A1AC-01 15 91172546 91172546 C T CRTC3 Missense_Mutation p.P350S 0.22 tolerated(0.13) benign(0.424) TCGA-DK-A1AC-01 15 91424718 91424718 C T FURIN Silent p.H665H 0.35 TCGA-DK-A1AC-01 15 91488214 91488214 C G UNC45A Missense_Mutation p.L374V 0.15 deleterious(0.02) probably_damaging(0.983) TCGA-DK-A1AC-01 15 91517833 91517833 C G PRC1 Missense_Mutation p.E444D 0.52 deleterious(0.02) possibly_damaging(0.553) TCGA-DK-A1AC-01 15 92706457 92706457 C T SLCO3A1 3'UTR 0.24 TCGA-DK-A1AC-01 16 10863027 10863027 C T NUBP1 3'UTR 0.68 TCGA-DK-A1AC-01 16 11792135 11792135 T G TXNDC11 Missense_Mutation p.K318T 0.69 tolerated(0.1) possibly_damaging(0.875) TCGA-DK-A1AC-01 16 11933795 11933795 C G RSL1D1 Missense_Mutation p.E301D 0.36 tolerated(0.13) benign(0.201) TCGA-DK-A1AC-01 16 1412450 1412450 C T GNPTG Intron 0.39 TCGA-DK-A1AC-01 16 15841995 15841995 C A MYH11 Nonsense_Mutation p.E704* 0.71 TCGA-DK-A1AC-01 16 16215927 16215927 C T ABCC1 Silent p.V1162V 0.20 TCGA-DK-A1AC-01 16 1877226 1877226 A T FAHD1 5'UTR 0.22 TCGA-DK-A1AC-01 16 19041668 19041668 G A TMC7 Silent p.L278L 0.48 TCGA-DK-A1AC-01 16 19183952 19183952 C T SYT17 Intron 0.65 TCGA-DK-A1AC-01 16 19236002 19236002 C T SYT17 Intron 0.15 TCGA-DK-A1AC-01 16 20835811 20835811 G A AC004381.6 Missense_Mutation p.A223T 0.12 tolerated(1) benign(0) TCGA-DK-A1AC-01 16 21170741 21170741 C T DNAH3 Missense_Mutation p.E8K 0.52 tolerated_low_confidence(0.28) benign(0) TCGA-DK-A1AC-01 16 21214522 21214522 C T ZP2 Silent p.L341L 0.17 TCGA-DK-A1AC-01 16 2215900 2215900 C T TRAF7 Silent p.F34F 0.22 TCGA-DK-A1AC-01 16 23436192 23436192 G A COG7 Missense_Mutation p.S296F 0.29 tolerated(0.36) benign(0.061) TCGA-DK-A1AC-01 16 23492071 23492071 C T GGA2 Missense_Mutation p.D301N 0.85 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 16 24802299 24802299 C T TNRC6A Missense_Mutation p.S779F 0.07 deleterious(0) possibly_damaging(0.723) TCGA-DK-A1AC-01 16 24817006 24817006 G A TNRC6A Silent p.L1401L 0.09 TCGA-DK-A1AC-01 16 2812535 2812535 C T SRRM2 Missense_Mutation p.S669L 0.34 unknown(0) TCGA-DK-A1AC-01 16 28128716 28128716 G A XPO6 Missense_Mutation p.H643Y 0.16 tolerated(0.06) benign(0.081) TCGA-DK-A1AC-01 16 2818133 2818133 C G SRRM2 Missense_Mutation p.S2535W 0.33 probably_damaging(0.998) TCGA-DK-A1AC-01 16 2819183 2819183 C G SRRM2 Missense_Mutation p.S2640C 0.49 probably_damaging(0.971) TCGA-DK-A1AC-01 16 28969930 28969930 G A NFATC2IP Intron 0.49 TCGA-DK-A1AC-01 16 28975091 28975091 C G NFATC2IP Silent p.L389L 0.21 TCGA-DK-A1AC-01 16 29814250 29814250 G A KIF22 Missense_Mutation p.E481K 0.47 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A1AC-01 16 30390351 30390351 C T SEPT1 Missense_Mutation p.R310Q 0.62 benign(0.023) TCGA-DK-A1AC-01 16 30390418 30390418 C T SEPT1 Missense_Mutation p.D288N 0.21 benign(0.23) TCGA-DK-A1AC-01 16 30740403 30740403 C T SRCAP Silent p.F1925F 0.18 TCGA-DK-A1AC-01 16 31004075 31004075 G C STX1B 3'UTR 0.20 TCGA-DK-A1AC-01 16 31088003 31088003 G T ZNF646 Nonsense_Mutation p.E120* 0.46 TCGA-DK-A1AC-01 16 31090756 31090756 C T ZNF646 Silent p.C1037C 0.26 TCGA-DK-A1AC-01 16 31142465 31142465 G A KAT8 3'UTR 0.50 TCGA-DK-A1AC-01 16 3293307 3293307 C G MEFV Missense_Mutation p.G727A 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-DK-A1AC-01 16 3640211 3640211 G A SLX4 Missense_Mutation p.S1143F 0.73 tolerated(0.05) possibly_damaging(0.762) TCGA-DK-A1AC-01 16 3641190 3641190 C T SLX4 Missense_Mutation p.E817K 0.26 deleterious(0) possibly_damaging(0.754) TCGA-DK-A1AC-01 16 46649952 46649952 G A SHCBP1 Silent p.L168L 0.28 TCGA-DK-A1AC-01 16 50745896 50745896 G A NOD2 Missense_Mutation p.E692K 0.31 tolerated(0.24) benign(0.006) TCGA-DK-A1AC-01 16 53514621 53514621 C G RBL2 Missense_Mutation p.F1008L 0.68 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 16 56670854 56670854 G A MT1M 3'Flank 0.33 TCGA-DK-A1AC-01 16 57016076 57016076 G A CETP Splice_Site p.X417_splice 0.57 TCGA-DK-A1AC-01 16 57062240 57062240 G A NLRC5 Missense_Mutation p.R729Q 0.26 tolerated(0.42) benign(0.003) TCGA-DK-A1AC-01 16 57181557 57181557 C G CPNE2 Missense_Mutation p.S545W 0.32 deleterious(0.01) possibly_damaging(0.708) TCGA-DK-A1AC-01 16 57416765 57416765 C T CX3CL1 Missense_Mutation p.R339W 0.25 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 16 66945993 66945993 C G CDH16 Missense_Mutation p.Q533H 0.20 deleterious(0.02) benign(0.389) TCGA-DK-A1AC-01 16 67203215 67203215 G C HSF4 Missense_Mutation p.E430Q 0.30 deleterious(0) possibly_damaging(0.501) TCGA-DK-A1AC-01 16 67203774 67203774 G A HSF4 3'UTR 0.24 TCGA-DK-A1AC-01 16 67208208 67208208 G A NOL3 Missense_Mutation p.E46K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1AC-01 16 67324826 67324826 C G KCTD19 Missense_Mutation p.D877H 0.31 deleterious(0) probably_damaging(0.987) TCGA-DK-A1AC-01 16 67425101 67425101 C T TPPP3 5'UTR 0.30 TCGA-DK-A1AC-01 16 67865789 67865789 C G CENPT Missense_Mutation p.E131Q 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1AC-01 16 69385466 69385466 C T TMED6 Missense_Mutation p.G64E 0.34 tolerated(0.27) possibly_damaging(0.9) TCGA-DK-A1AC-01 16 69726682 69726682 C T NFAT5 Missense_Mutation p.S985F 0.23 benign(0.092) TCGA-DK-A1AC-01 16 70165883 70165883 C T PDPR Intron 0.33 TCGA-DK-A1AC-01 16 70170094 70170094 C G PDPR Intron 0.20 TCGA-DK-A1AC-01 16 70301626 70301626 G A AARS Silent p.L386L 0.32 TCGA-DK-A1AC-01 16 70546183 70546183 C T COG4 Missense_Mutation p.E233K 0.42 tolerated(0.18) benign(0.287) TCGA-DK-A1AC-01 16 83817067 83817067 C T CDH13 Silent p.F755F 0.42 TCGA-DK-A1AC-01 16 8941604 8941604 C T PMM2 Silent p.F221F 0.66 TCGA-DK-A1AC-01 16 9009183 9009183 C T USP7 Missense_Mutation p.E336K 0.59 deleterious(0.05) benign(0.001) TCGA-DK-A1AC-01 17 15942956 15942956 G C NCOR1 Missense_Mutation p.S2249C 0.33 probably_damaging(0.997) TCGA-DK-A1AC-01 17 16343359 16343359 G A TRPV2 3'Flank 0.62 TCGA-DK-A1AC-01 17 16703636 16703636 G A CCDC144A 3'UTR 0.20 TCGA-DK-A1AC-01 17 18653396 18653396 C T FBXW10 Silent p.V315V 0.46 TCGA-DK-A1AC-01 17 19708077 19708077 C A ULK2 Missense_Mutation p.R408S 0.65 deleterious(0.04) benign(0.26) TCGA-DK-A1AC-01 17 2310396 2310396 G A AC006435.1 Nonsense_Mutation p.Q126* 0.47 TCGA-DK-A1AC-01 17 26696647 26696647 G C VTN Nonsense_Mutation p.S137* 0.21 TCGA-DK-A1AC-01 17 26965042 26965042 C G KIAA0100 Missense_Mutation p.R528P 0.40 tolerated(0.17) possibly_damaging(0.613) TCGA-DK-A1AC-01 17 26967622 26967622 C T KIAA0100 Silent p.K282K 0.31 TCGA-DK-A1AC-01 17 26967681 26967681 C T KIAA0100 Missense_Mutation p.E263K 0.35 tolerated(0.81) benign(0.005) TCGA-DK-A1AC-01 17 26967693 26967693 C T KIAA0100 Missense_Mutation p.E259K 0.37 tolerated(0.53) benign(0.007) TCGA-DK-A1AC-01 17 27075418 27075418 G A TRAF4 Missense_Mutation p.E201K 0.45 deleterious(0.03) benign(0.201) TCGA-DK-A1AC-01 17 27076569 27076569 G A TRAF4 Missense_Mutation p.E463K 0.30 deleterious(0) possibly_damaging(0.593) TCGA-DK-A1AC-01 17 27438549 27438549 G A MYO18A Silent p.H931H 0.17 TCGA-DK-A1AC-01 17 28598396 28598396 C T BLMH Missense_Mutation p.E347K 0.33 tolerated(0.31) benign(0.202) TCGA-DK-A1AC-01 17 28601152 28601152 C T BLMH Missense_Mutation p.D237N 0.23 tolerated(0.08) probably_damaging(1) TCGA-DK-A1AC-01 17 28770948 28770948 C T CPD Silent p.L834L 0.19 TCGA-DK-A1AC-01 17 30302704 30302704 G A SUZ12 Missense_Mutation p.M265I 0.19 tolerated(0.22) benign(0.033) TCGA-DK-A1AC-01 17 30594838 30594838 G A RHBDL3 Intron 0.16 TCGA-DK-A1AC-01 17 33288630 33288630 G A ZNF830 Silent p.V15V 0.30 TCGA-DK-A1AC-01 17 33690544 33690544 C T SLFN11 Missense_Mutation p.E95K 0.47 deleterious(0.01) benign(0.209) TCGA-DK-A1AC-01 17 34264799 34264799 C G LYZL6 Missense_Mutation p.K87N 0.36 tolerated(0.53) benign(0.173) TCGA-DK-A1AC-01 17 35297719 35297719 C T LHX1 Silent p.G101G 0.25 TCGA-DK-A1AC-01 17 35545234 35545234 C T ACACA Missense_Mutation p.D1587N 0.48 tolerated(0.38) probably_damaging(0.998) TCGA-DK-A1AC-01 17 36476600 36476600 G A MRPL45 Missense_Mutation p.M203I 0.50 tolerated(0.86) benign(0.007) TCGA-DK-A1AC-01 17 36486038 36486038 C T GPR179 Silent p.V1138V 0.44 TCGA-DK-A1AC-01 17 37576107 37576107 C G MED1 Missense_Mutation p.S387T 0.25 tolerated(0.05) possibly_damaging(0.817) TCGA-DK-A1AC-01 17 38175706 38175706 C T MED24 3'UTR 0.24 TCGA-DK-A1AC-01 17 38421182 38421182 C A WIPF2 Missense_Mutation p.P252T 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-DK-A1AC-01 17 38910644 38910644 C G KRT25 Missense_Mutation p.R169T 0.30 deleterious(0.01) possibly_damaging(0.906) TCGA-DK-A1AC-01 17 39116576 39116576 C G KRT39 Missense_Mutation p.E392Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 17 39137159 39137159 C G KRT40 Missense_Mutation p.E285Q 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A1AC-01 17 39183285 39183285 C T KRTAP1-5 Silent p.Q41Q 0.23 TCGA-DK-A1AC-01 17 39183317 39183317 C G KRTAP1-5 Missense_Mutation p.E31Q 0.26 tolerated(1) unknown(0) TCGA-DK-A1AC-01 17 39190696 39190696 C T KRTAP1-3 Silent p.V126V 0.50 TCGA-DK-A1AC-01 17 39551521 39551521 G A KRT31 Silent p.I284I 0.22 TCGA-DK-A1AC-01 17 39981850 39981850 C G NT5C3B Missense_Mutation p.E276D 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A1AC-01 17 40001428 40001428 G A KLHL10 Missense_Mutation p.M245I 0.22 tolerated(0.17) benign(0.001) TCGA-DK-A1AC-01 17 40069977 40069977 C T ACLY Silent p.L50L 0.24 TCGA-DK-A1AC-01 17 40070105 40070105 C T ACLY Missense_Mutation p.E8K 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 17 40323937 40323937 G A KCNH4 Missense_Mutation p.S355F 0.33 deleterious(0) possibly_damaging(0.803) TCGA-DK-A1AC-01 17 40384031 40384031 C G STAT5B Missense_Mutation p.E39Q 0.46 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AC-01 17 4045890 4045890 G A ZZEF1 Silent p.F100F 0.69 TCGA-DK-A1AC-01 17 40629672 40629672 C T ATP6V0A1 Nonsense_Mutation p.Q147* 0.22 TCGA-DK-A1AC-01 17 40689536 40689536 G A NAGLU Nonsense_Mutation p.W168* 0.23 TCGA-DK-A1AC-01 17 40705437 40705437 C T HSD17B1 Intron 0.28 TCGA-DK-A1AC-01 17 40828484 40828484 C T PLEKHH3 Missense_Mutation p.G33E 0.29 tolerated_low_confidence(0.24) unknown(0) TCGA-DK-A1AC-01 17 41020689 41020689 C G AOC4P RNA 0.58 TCGA-DK-A1AC-01 17 41116252 41116252 G A PTGES3L-AARSD1 Silent p.F188F 0.30 TCGA-DK-A1AC-01 17 42274334 42274334 G A ATXN7L3 Silent p.I139I 0.29 TCGA-DK-A1AC-01 17 42513873 42513873 G C GPATCH8 Silent p.V78V 0.42 TCGA-DK-A1AC-01 17 42745073 42745073 G C C17orf104 Silent p.G598G 0.14 TCGA-DK-A1AC-01 17 42745351 42745351 G A C17orf104 Missense_Mutation p.R691K 0.16 tolerated(0.2) benign(0.079) TCGA-DK-A1AC-01 17 42928498 42928498 G A EFTUD2 3'UTR 0.46 TCGA-DK-A1AC-01 17 43226866 43226866 C T HEXIM1 Silent p.F103F 0.43 TCGA-DK-A1AC-01 17 43246319 43246319 G C HEXIM2 Intron 0.28 TCGA-DK-A1AC-01 17 43545870 43545870 G A PLEKHM1 Missense_Mutation p.S338L 0.48 tolerated(0.35) benign(0.001) TCGA-DK-A1AC-01 17 43585443 43585443 G A LRRC37A4P 3'Flank 0.15 TCGA-DK-A1AC-01 17 44096051 44096072 GTCCCTGGACAATATCACCCAC - MAPT Frame_Shift_Del p.D693Afs*12 0.18 TCGA-DK-A1AC-01 17 4577935 4577935 C T PELP1 Silent p.G484G 0.68 TCGA-DK-A1AC-01 17 45891976 45891976 G A OSBPL7 Missense_Mutation p.S421L 0.21 deleterious(0.02) benign(0.068) TCGA-DK-A1AC-01 17 46606878 46606878 C T HOXB1 3'UTR 0.50 TCGA-DK-A1AC-01 17 46805665 46805665 C T HOXB13 Silent p.L97L 0.48 TCGA-DK-A1AC-01 17 47022045 47022045 C T SNF8 Missense_Mutation p.E18K 0.27 tolerated(0.51) benign(0.02) TCGA-DK-A1AC-01 17 48618874 48618874 G A EPN3 Silent p.T468T 0.17 TCGA-DK-A1AC-01 17 48917453 48917453 C T WFIKKN2 Silent p.N268N 0.31 TCGA-DK-A1AC-01 17 5058719 5058719 G A USP6 Missense_Mutation p.M882I 0.70 tolerated_low_confidence(0.51) benign(0.02) TCGA-DK-A1AC-01 17 5086360 5086360 G A ZNF594 Missense_Mutation p.H398Y 0.74 deleterious(0) possibly_damaging(0.684) TCGA-DK-A1AC-01 17 5322700 5322700 C T NUP88 Missense_Mutation p.E91K 0.39 tolerated(0.18) benign(0.004) TCGA-DK-A1AC-01 17 5322772 5322772 C G NUP88 Missense_Mutation p.E67Q 0.44 deleterious(0.02) possibly_damaging(0.692) TCGA-DK-A1AC-01 17 5418329 5418329 C T NLRP1 Silent p.L1389L 0.48 TCGA-DK-A1AC-01 17 55058443 55058443 G A SCPEP1 Missense_Mutation p.G26E 0.59 deleterious(0.04) possibly_damaging(0.46) TCGA-DK-A1AC-01 17 55074400 55074400 C G SCPEP1 Missense_Mutation p.F288L 0.19 tolerated(0.86) benign(0.021) TCGA-DK-A1AC-01 17 55693406 55693406 T C MSI2 Missense_Mutation p.Y205H 0.26 deleterious(0.01) possibly_damaging(0.492) TCGA-DK-A1AC-01 17 56388949 56388949 A C BZRAP1 Missense_Mutation p.Y1022D 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 17 56408633 56408633 C T BZRAP1 5'Flank 0.57 TCGA-DK-A1AC-01 17 56428800 56428800 C T SUPT4H1 Missense_Mutation p.E47K 0.18 deleterious(0.01) possibly_damaging(0.448) TCGA-DK-A1AC-01 17 56620915 56620915 C T C17orf47 Silent p.T211T 0.26 TCGA-DK-A1AC-01 17 56650602 56650602 A C TEX14 Missense_Mutation p.S1197A 0.21 tolerated(0.17) benign(0.146) TCGA-DK-A1AC-01 17 59067592 59067592 G A BCAS3 Silent p.L494L 0.29 TCGA-DK-A1AC-01 17 60088352 60088352 G A MED13 Missense_Mutation p.S509L 0.23 tolerated(0.14) benign(0.05) TCGA-DK-A1AC-01 17 61781653 61781653 G A STRADA Intron 0.64 TCGA-DK-A1AC-01 17 62892235 62892235 C T LRRC37A3 Missense_Mutation p.E381K 0.34 deleterious(0.04) possibly_damaging(0.549) TCGA-DK-A1AC-01 17 6358809 6358809 C T PITPNM3 Missense_Mutation p.R925K 0.76 deleterious(0.03) possibly_damaging(0.867) TCGA-DK-A1AC-01 17 66267782 66267782 C T SLC16A6 Silent p.L173L 0.51 TCGA-DK-A1AC-01 17 67149526 67149526 C A ABCA10 Silent p.L1352L 0.25 TCGA-DK-A1AC-01 17 67170479 67170479 T C ABCA10 Silent p.S1035S 0.20 TCGA-DK-A1AC-01 17 70119040 70119040 C T SOX9 Silent p.F204F 0.47 TCGA-DK-A1AC-01 17 7129501 7129501 G A DVL2 Missense_Mutation p.R632W 0.16 tolerated(0.2) possibly_damaging(0.898) TCGA-DK-A1AC-01 17 7145647 7145647 C T GABARAP Translation_Start_Site p.M1? 0.79 deleterious(0.04) benign(0.008) TCGA-DK-A1AC-01 17 7256381 7256381 G A KCTD11 Silent p.L40L 0.84 TCGA-DK-A1AC-01 17 73016661 73016661 G A ICT1 Missense_Mutation p.D149N 0.24 deleterious(0.02) benign(0.151) TCGA-DK-A1AC-01 17 73132157 73132157 G A HN1 Silent p.L162L 0.32 TCGA-DK-A1AC-01 17 7329765 7329765 C G C17orf74 Missense_Mutation p.P152R 0.73 tolerated(0.16) probably_damaging(0.972) TCGA-DK-A1AC-01 17 73570949 73570949 C T LLGL2 Intron 0.31 TCGA-DK-A1AC-01 17 73998610 73998610 C T CDK3 Missense_Mutation p.R169C 0.33 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 17 74053483 74053483 C T SRP68 Splice_Site p.X326_splice 0.31 TCGA-DK-A1AC-01 17 7492785 7492785 C T SOX15 Silent p.Q70Q 0.57 TCGA-DK-A1AC-01 17 7572986 7572986 G A TP53 Nonsense_Mutation p.Q375* 0.73 TCGA-DK-A1AC-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.77 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 17 7702525 7702525 C T DNAH2 Silent p.I2888I 0.70 TCGA-DK-A1AC-01 17 7760451 7760451 G A LSMD1 Silent p.L97L 0.29 TCGA-DK-A1AC-01 17 77758613 77758613 G A CBX2 Silent p.E457E 0.38 TCGA-DK-A1AC-01 17 77770064 77770064 G A CBX8 Missense_Mutation p.A55V 0.51 tolerated(0.07) probably_damaging(0.983) TCGA-DK-A1AC-01 17 7792337 7792337 G A CHD3 Intron 0.75 TCGA-DK-A1AC-01 17 78039319 78039319 G C CCDC40 Missense_Mutation p.K492N 0.19 deleterious(0) probably_damaging(0.986) TCGA-DK-A1AC-01 17 78176253 78176253 G A CARD14 Intron 0.43 TCGA-DK-A1AC-01 17 78268536 78268536 G A RNF213 Missense_Mutation p.D497N 0.30 probably_damaging(0.999) TCGA-DK-A1AC-01 17 79478272 79478272 G A ACTG1 Silent p.I248I 0.39 TCGA-DK-A1AC-01 17 79803467 79803467 G A P4HB Silent p.L443L 0.48 TCGA-DK-A1AC-01 17 79857411 79857411 G A ANAPC11 Missense_Mutation p.A135T 0.26 tolerated_low_confidence(0.07) benign(0.261) TCGA-DK-A1AC-01 17 80018633 80018633 C T DUS1L Silent p.A322A 0.29 TCGA-DK-A1AC-01 17 80018637 80018637 C T DUS1L Missense_Mutation p.G321E 0.31 tolerated(0.37) benign(0.005) TCGA-DK-A1AC-01 17 80019230 80019230 C G DUS1L Splice_Site p.X233_splice 0.16 TCGA-DK-A1AC-01 17 80574488 80574488 G A WDR45B Silent p.F280F 0.23 TCGA-DK-A1AC-01 17 80588887 80588889 CTT - WDR45B In_Frame_Del p.E51del 0.25 TCGA-DK-A1AC-01 17 8508259 8508259 C A MYH10 Missense_Mutation p.K129N 0.20 possibly_damaging(0.628) TCGA-DK-A1AC-01 17 8725949 8725949 G A PIK3R6 Silent p.G581G 0.31 TCGA-DK-A1AC-01 17 9143161 9143161 C T NTN1 Missense_Mutation p.S564F 0.70 deleterious(0.01) probably_damaging(0.914) TCGA-DK-A1AC-01 18 14478215 14478215 C T CXADRP3 RNA 0.23 TCGA-DK-A1AC-01 18 19110207 19110207 T G ESCO1 3'UTR 0.50 TCGA-DK-A1AC-01 18 19154829 19154829 G C ESCO1 5'UTR 0.19 TCGA-DK-A1AC-01 18 20596833 20596834 - A RBBP8 Frame_Shift_Ins p.E803Rfs*12 0.19 TCGA-DK-A1AC-01 18 20606179 20606179 A C RBBP8 Silent p.P890P 0.55 TCGA-DK-A1AC-01 18 21148935 21148935 C T NPC1 Silent p.L105L 0.26 TCGA-DK-A1AC-01 18 21479265 21479265 G C LAMA3 Missense_Mutation p.Q1950H 0.27 benign(0.25) TCGA-DK-A1AC-01 18 23866219 23866219 C T TAF4B Missense_Mutation p.S449L 0.40 tolerated(0.1) benign(0.33) TCGA-DK-A1AC-01 18 29171903 29171903 G A TTR Missense_Mutation p.G13E 0.35 deleterious(0) probably_damaging(0.972) TCGA-DK-A1AC-01 18 2920390 2920390 G A LPIN2 Silent p.L864L 0.37 TCGA-DK-A1AC-01 18 29419348 29419348 C T TRAPPC8 Missense_Mutation p.E1304K 0.32 deleterious(0.02) possibly_damaging(0.788) TCGA-DK-A1AC-01 18 29617112 29617112 G A RNF125 Silent p.K66K 0.36 TCGA-DK-A1AC-01 18 31523073 31523073 C T NOL4 Missense_Mutation p.E500K 0.38 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AC-01 18 32391936 32391936 G A DTNA Missense_Mutation p.M154I 0.33 tolerated(0.06) benign(0.098) TCGA-DK-A1AC-01 18 33722249 33722249 G C ELP2 Missense_Mutation p.Q263H 0.32 deleterious(0.04) benign(0.114) TCGA-DK-A1AC-01 18 33722792 33722792 G C ELP2 Missense_Mutation p.R285T 0.35 tolerated(0.38) benign(0.027) TCGA-DK-A1AC-01 18 3814113 3814113 C T DLGAP1 Missense_Mutation p.R373K 0.59 tolerated(0.24) probably_damaging(0.986) TCGA-DK-A1AC-01 18 43571884 43571884 C T PSTPIP2 Missense_Mutation p.G302R 0.35 tolerated(0.12) possibly_damaging(0.757) TCGA-DK-A1AC-01 18 55362485 55362485 A C ATP8B1 Missense_Mutation p.F286L 0.30 deleterious(0.03) benign(0.243) TCGA-DK-A1AC-01 18 55368508 55368508 G A ATP8B1 Missense_Mutation p.T144I 0.30 deleterious(0) probably_damaging(0.926) TCGA-DK-A1AC-01 18 60985642 60985642 G A BCL2 Silent p.L86L 0.33 TCGA-DK-A1AC-01 18 61647081 61647081 C T SERPINB8 Missense_Mutation p.S72L 0.34 tolerated(0.13) benign(0.044) TCGA-DK-A1AC-01 18 67715352 67715352 G A RTTN Missense_Mutation p.S1799F 0.41 deleterious(0) possibly_damaging(0.629) TCGA-DK-A1AC-01 18 72167257 72167257 C T CNDP2 Missense_Mutation p.R17C 0.38 deleterious(0.04) benign(0.006) TCGA-DK-A1AC-01 18 77211716 77211716 G A NFATC1 Silent p.Q588Q 0.37 TCGA-DK-A1AC-01 18 8824703 8824703 G A SOGA2 Silent p.V1065V 0.62 TCGA-DK-A1AC-01 18 9337220 9337220 G A TWSG1 5'UTR 0.53 TCGA-DK-A1AC-01 18 9522255 9522255 G A RALBP1 Silent p.L267L 0.22 TCGA-DK-A1AC-01 19 10230536 10230536 C T EIF3G 5'UTR 0.24 TCGA-DK-A1AC-01 19 10488945 10488945 G A TYK2 Silent p.F46F 0.37 TCGA-DK-A1AC-01 19 10571772 10571772 C T PDE4A Silent p.I486I 0.16 TCGA-DK-A1AC-01 19 10677925 10677925 C T CDKN2D Missense_Mutation p.D104N 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-DK-A1AC-01 19 10793282 10793282 G A ILF3 Missense_Mutation p.E484K 0.32 tolerated(0.07) benign(0.07) TCGA-DK-A1AC-01 19 10793285 10793285 G A ILF3 Missense_Mutation p.E485K 0.32 tolerated(0.17) possibly_damaging(0.553) TCGA-DK-A1AC-01 19 10793287 10793287 G A ILF3 Silent p.E485E 0.32 TCGA-DK-A1AC-01 19 1093966 1093966 C T POLR2E Missense_Mutation p.D57N 0.20 tolerated(0.06) benign(0.128) TCGA-DK-A1AC-01 19 11040318 11040318 G A C19orf52 Silent p.K241K 0.56 TCGA-DK-A1AC-01 19 11319653 11319653 G A DOCK6 Silent p.L1626L 0.33 TCGA-DK-A1AC-01 19 11493835 11493835 G A EPOR Silent p.F63F 0.25 TCGA-DK-A1AC-01 19 11541826 11541826 C T CCDC151 Missense_Mutation p.A87T 0.19 tolerated(0.05) benign(0.401) TCGA-DK-A1AC-01 19 11545897 11545897 C T CCDC151 5'UTR 0.33 TCGA-DK-A1AC-01 19 11545908 11545908 C T CCDC151 5'UTR 0.50 TCGA-DK-A1AC-01 19 11546865 11546865 G A PRKCSH 5'UTR 0.57 TCGA-DK-A1AC-01 19 11616941 11616941 C T ECSIT 3'UTR 0.19 TCGA-DK-A1AC-01 19 11687879 11687879 C G ACP5 Missense_Mutation p.R85T 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 19 12076012 12076012 G A ZNF763 5'UTR 0.32 TCGA-DK-A1AC-01 19 12273921 12273921 G A ZNF136 5'UTR 0.29 TCGA-DK-A1AC-01 19 12885514 12885514 G A HOOK2 Missense_Mutation p.S58L 0.35 deleterious(0.03) benign(0.108) TCGA-DK-A1AC-01 19 12958498 12958498 G A MAST1 Silent p.P187P 0.37 TCGA-DK-A1AC-01 19 13246852 13246852 C T NACC1 Silent p.S277S 0.59 TCGA-DK-A1AC-01 19 13264058 13264058 C T IER2 Missense_Mutation p.H20Y 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A1AC-01 19 13325339 13325339 C G CACNA1A Missense_Mutation p.D1939H 0.36 probably_damaging(0.934) TCGA-DK-A1AC-01 19 13470507 13470507 C T CACNA1A Silent p.G297G 0.25 TCGA-DK-A1AC-01 19 14507162 14507162 G A CD97 Missense_Mutation p.E119K 0.22 tolerated(0.07) probably_damaging(0.931) TCGA-DK-A1AC-01 19 1453566 1453566 G A APC2 Silent p.L123L 0.35 TCGA-DK-A1AC-01 19 1461114 1461114 G T APC2 Missense_Mutation p.V534L 0.23 benign(0.011) TCGA-DK-A1AC-01 19 14991344 14991344 G A OR7A17 Missense_Mutation p.S275L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-DK-A1AC-01 19 15648197 15648197 C T CYP4F22 Silent p.L131L 0.22 TCGA-DK-A1AC-01 19 16535906 16535906 G A EPS15L1 Silent p.L260L 0.20 TCGA-DK-A1AC-01 19 17160658 17160658 C T HAUS8 3'UTR 0.26 TCGA-DK-A1AC-01 19 17339098 17339098 G T OCEL1 Nonsense_Mutation p.E218* 0.27 TCGA-DK-A1AC-01 19 17375060 17375060 G A USHBP1 Missense_Mutation p.P17S 0.15 tolerated(0.32) unknown(0) TCGA-DK-A1AC-01 19 17476312 17476312 G A PLVAP Missense_Mutation p.A321V 0.19 tolerated(0.08) benign(0.212) TCGA-DK-A1AC-01 19 17608118 17608118 G A SLC27A1 Missense_Mutation p.E351K 0.25 tolerated(0.44) benign(0.025) TCGA-DK-A1AC-01 19 1785654 1785654 C G ATP8B3 Missense_Mutation p.Q1069H 0.57 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A1AC-01 19 17942579 17942579 C T JAK3 Silent p.E903E 0.30 TCGA-DK-A1AC-01 19 19313597 19313597 C T NR2C2AP Intron 0.20 TCGA-DK-A1AC-01 19 19359535 19359535 G T NCAN Nonsense_Mutation p.E1222* 0.23 TCGA-DK-A1AC-01 19 19420949 19420949 G A SUGP1 Silent p.F89F 0.19 TCGA-DK-A1AC-01 19 19675894 19675894 G A PBX4 Missense_Mutation p.S258F 0.48 deleterious(0.01) possibly_damaging(0.734) TCGA-DK-A1AC-01 19 21607496 21607496 C G ZNF493 Missense_Mutation p.H679D 0.14 deleterious(0.01) possibly_damaging(0.837) TCGA-DK-A1AC-01 19 21607848 21607848 C T ZNF493 3'UTR 0.38 TCGA-DK-A1AC-01 19 21719352 21719352 G C ZNF429 Missense_Mutation p.R166T 0.11 tolerated(0.2) probably_damaging(0.969) TCGA-DK-A1AC-01 19 2194543 2194543 G A DOT1L Missense_Mutation p.M206I 0.28 deleterious(0) possibly_damaging(0.811) TCGA-DK-A1AC-01 19 2208972 2208972 C T DOT1L Silent p.L334L 0.34 TCGA-DK-A1AC-01 19 22364107 22364107 C T ZNF676 Missense_Mutation p.E138K 0.17 tolerated(1) benign(0.002) TCGA-DK-A1AC-01 19 23405538 23405538 C T ZNF724P Silent p.E503E 0.16 TCGA-DK-A1AC-01 19 23544693 23544693 G A ZNF91 Missense_Mutation p.S363L 0.15 tolerated(0.06) benign(0.307) TCGA-DK-A1AC-01 19 24309428 24309428 C T ZNF254 Missense_Mutation p.S209F 0.24 tolerated(0.4) benign(0.002) TCGA-DK-A1AC-01 19 2852793 2852793 A G ZNF555 Missense_Mutation p.T244A 0.24 tolerated(0.12) benign(0.061) TCGA-DK-A1AC-01 19 3055693 3055693 C G AES Missense_Mutation p.C156S 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.828) TCGA-DK-A1AC-01 19 32845546 32845546 G A ZNF507 Missense_Mutation p.D604N 0.12 deleterious(0.01) probably_damaging(0.956) TCGA-DK-A1AC-01 19 33467474 33467474 C T C19orf40 Silent p.L178L 0.20 TCGA-DK-A1AC-01 19 33579137 33579137 C T GPATCH1 Silent p.F57F 0.30 TCGA-DK-A1AC-01 19 33792439 33792439 G T CEBPA Silent p.I294I 0.25 TCGA-DK-A1AC-01 19 33792440 33792440 A T CEBPA Missense_Mutation p.I294N 0.22 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 19 35175770 35175770 G A ZNF302 Silent p.Q276Q 0.21 TCGA-DK-A1AC-01 19 35451187 35451187 C T ZNF792 Missense_Mutation p.D79N 0.20 tolerated(0.41) benign(0.395) TCGA-DK-A1AC-01 19 35512680 35512680 G A GRAMD1A Silent p.R555R 0.29 TCGA-DK-A1AC-01 19 3586625 3586625 G A GIPC3 Missense_Mutation p.D120N 0.15 deleterious(0) possibly_damaging(0.501) TCGA-DK-A1AC-01 19 36278895 36278895 C T ARHGAP33 Missense_Mutation p.S982F 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A1AC-01 19 36590419 36590419 A G WDR62 Missense_Mutation p.Q880R 0.41 tolerated(1) benign(0.002) TCGA-DK-A1AC-01 19 36673778 36673778 C T ZNF565 Missense_Mutation p.E364K 0.30 tolerated(0.23) probably_damaging(0.998) TCGA-DK-A1AC-01 19 374361 374361 C T THEG Silent p.R123R 0.23 TCGA-DK-A1AC-01 19 38597188 38597188 G A SIPA1L3 Missense_Mutation p.G681R 0.08 deleterious(0) probably_damaging(0.971) TCGA-DK-A1AC-01 19 3964647 3964647 G A DAPK3 Silent p.I135I 0.25 TCGA-DK-A1AC-01 19 39734518 39734518 C G IFNL3 Missense_Mutation p.R146S 0.42 deleterious(0.03) benign(0.218) TCGA-DK-A1AC-01 19 39734756 39734756 C T IFNL3 Silent p.L100L 0.44 TCGA-DK-A1AC-01 19 39868130 39868130 G A SAMD4B Silent p.V370V 0.22 TCGA-DK-A1AC-01 19 39926340 39926340 C T RPS16 Silent p.A19A 0.11 TCGA-DK-A1AC-01 19 39965239 39965239 G T SUPT5H Missense_Mutation p.G969C 0.37 deleterious(0) probably_damaging(0.976) TCGA-DK-A1AC-01 19 39971296 39971296 G A TIMM50 Missense_Mutation p.E38K 0.20 tolerated_low_confidence(0.81) benign(0) TCGA-DK-A1AC-01 19 40097960 40097960 C T LGALS13 Missense_Mutation p.S134L 0.44 deleterious(0) possibly_damaging(0.461) TCGA-DK-A1AC-01 19 40370212 40370212 C T FCGBP Missense_Mutation p.E4152K 0.14 possibly_damaging(0.635) TCGA-DK-A1AC-01 19 40398259 40398259 G A FCGBP Silent p.G2236G 0.43 TCGA-DK-A1AC-01 19 40433739 40433739 G A FCGBP Missense_Mutation p.S177L 0.46 benign(0.164) TCGA-DK-A1AC-01 19 40542198 40542198 C T ZNF780B Missense_Mutation p.E190K 0.11 tolerated(0.09) possibly_damaging(0.849) TCGA-DK-A1AC-01 19 40542207 40542207 G A ZNF780B Missense_Mutation p.H187Y 0.11 deleterious(0.02) possibly_damaging(0.684) TCGA-DK-A1AC-01 19 40715101 40715101 C T MAP3K10 Silent p.I509I 0.40 TCGA-DK-A1AC-01 19 40947819 40947819 G A SERTAD3 Missense_Mutation p.L57F 0.29 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 19 41008759 41008759 G A SPTBN4 Silent p.L427L 0.41 TCGA-DK-A1AC-01 19 41088265 41088265 C T SHKBP1 Missense_Mutation p.H285Y 0.18 tolerated(0.08) benign(0.004) TCGA-DK-A1AC-01 19 41117097 41117097 G A LTBP4 Missense_Mutation p.R684Q 0.14 tolerated(0.1) possibly_damaging(0.864) TCGA-DK-A1AC-01 19 41118028 41118028 G A LTBP4 Silent p.V810V 0.25 TCGA-DK-A1AC-01 19 41349839 41349839 G A CYP2A6 Silent p.L449L 0.13 TCGA-DK-A1AC-01 19 4164618 4164618 C T CREB3L3 Missense_Mutation p.T232I 0.41 deleterious(0) benign(0.006) TCGA-DK-A1AC-01 19 42557979 42557979 C T GRIK5 Missense_Mutation p.E387K 0.14 tolerated(1) benign(0.168) TCGA-DK-A1AC-01 19 42584118 42584118 G C ZNF574 Missense_Mutation p.E454Q 0.47 tolerated(0.57) benign(0.403) TCGA-DK-A1AC-01 19 42827892 42827892 C G TMEM145 Missense_Mutation p.S451W 0.19 deleterious(0) possibly_damaging(0.68) TCGA-DK-A1AC-01 19 42854308 42854308 C T MEGF8 Silent p.S769S 0.13 TCGA-DK-A1AC-01 19 4288274 4288274 G A SHD Missense_Mutation p.E251K 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A1AC-01 19 4288325 4288325 G A SHD Missense_Mutation p.E268K 0.23 deleterious(0.01) benign(0.11) TCGA-DK-A1AC-01 19 42930623 42930623 C G LIPE Missense_Mutation p.E227Q 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-DK-A1AC-01 19 43032605 43032605 C T CEACAM1 5'UTR 0.16 TCGA-DK-A1AC-01 19 43428961 43428961 C T PSG7 Silent p.%3D 0.18 TCGA-DK-A1AC-01 19 43866321 43866321 G T CD177 3'UTR 0.10 TCGA-DK-A1AC-01 19 44302740 44302740 C T LYPD5 Silent p.P128P 0.15 TCGA-DK-A1AC-01 19 44351438 44351438 C T ZNF283 Missense_Mutation p.H229Y 0.36 deleterious(0.01) possibly_damaging(0.539) TCGA-DK-A1AC-01 19 44514653 44514653 C G ZNF230 Missense_Mutation p.I154M 0.18 tolerated(0.22) possibly_damaging(0.463) TCGA-DK-A1AC-01 19 44585289 44585289 C T ZNF284 Missense_Mutation p.S46L 0.35 deleterious(0.03) benign(0.119) TCGA-DK-A1AC-01 19 44676255 44676255 C T ZNF226 Silent p.F10F 0.35 TCGA-DK-A1AC-01 19 45391385 45391385 G C PVRL2 Missense_Mutation p.E456Q 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-DK-A1AC-01 19 45873455 45873455 T C ERCC2 Missense_Mutation p.Y14C 0.31 deleterious(0) probably_damaging(0.977) TCGA-DK-A1AC-01 19 45971689 45971689 G A FOSB 5'UTR 0.46 TCGA-DK-A1AC-01 19 45988916 45988916 G C RTN2 3'UTR 0.29 TCGA-DK-A1AC-01 19 46271356 46271356 G A SIX5 Silent p.F249F 0.24 TCGA-DK-A1AC-01 19 46375902 46375902 C T FOXA3 Silent p.F213F 0.36 TCGA-DK-A1AC-01 19 46997390 46997390 C T PNMAL2 Missense_Mutation p.E445K 0.36 deleterious_low_confidence(0.04) benign(0.312) TCGA-DK-A1AC-01 19 47151862 47151862 T C DACT3 Silent p.G589G 0.16 TCGA-DK-A1AC-01 19 47910774 47910774 G A MEIS3 Missense_Mutation p.S303F 0.17 deleterious_low_confidence(0.04) benign(0.003) TCGA-DK-A1AC-01 19 49334955 49334955 C T HSD17B14 Silent p.L113L 0.18 TCGA-DK-A1AC-01 19 49469600 49469600 G T FTL Missense_Mutation p.E104D 0.46 deleterious(0.01) benign(0.39) TCGA-DK-A1AC-01 19 49846565 49846565 C T TEAD2 Missense_Mutation p.E338K 0.25 deleterious(0.01) benign(0.403) TCGA-DK-A1AC-01 19 50191558 50191558 C T PRMT1 3'UTR 0.42 TCGA-DK-A1AC-01 19 50243401 50243401 C T TSKS Missense_Mutation p.E513K 0.19 tolerated(0.11) possibly_damaging(0.555) TCGA-DK-A1AC-01 19 50245148 50245148 C G TSKS Missense_Mutation p.K497N 0.37 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 19 50393764 50393764 C T IL4I1 Silent p.A311A 0.18 TCGA-DK-A1AC-01 19 50412045 50412045 C A NUP62 Missense_Mutation p.W340C 0.38 deleterious(0) probably_damaging(0.965) TCGA-DK-A1AC-01 19 51009492 51009492 C T JOSD2 Missense_Mutation p.E169K 0.12 deleterious(0.03) benign(0.025) TCGA-DK-A1AC-01 19 51219555 51219555 C G SHANK1 Missense_Mutation p.E146Q 0.38 probably_damaging(0.977) TCGA-DK-A1AC-01 19 51527533 51527533 G T KLK11 Silent p.L109L 0.50 TCGA-DK-A1AC-01 19 51920200 51920200 C T SIGLEC10 Silent p.L142L 0.54 TCGA-DK-A1AC-01 19 52498046 52498046 G A ZNF615 Nonsense_Mutation p.Q106* 0.13 TCGA-DK-A1AC-01 19 52568426 52568426 G A ZNF841 Silent p.N903N 0.12 TCGA-DK-A1AC-01 19 52618287 52618287 G A ZNF616 Silent p.I710I 0.12 TCGA-DK-A1AC-01 19 52659824 52659824 G A ZNF836 Missense_Mutation p.S371F 0.29 deleterious(0) possibly_damaging(0.828) TCGA-DK-A1AC-01 19 52663830 52663830 G A ZNF836 Silent p.F10F 0.10 TCGA-DK-A1AC-01 19 52937222 52937222 C A ZNF534 Missense_Mutation p.F10L 0.08 deleterious(0.05) possibly_damaging(0.874) TCGA-DK-A1AC-01 19 53014288 53014288 C G ZNF578 Silent p.L218L 0.11 TCGA-DK-A1AC-01 19 53384869 53384869 G C ZNF320 Missense_Mutation p.F170L 0.07 deleterious(0.02) possibly_damaging(0.775) TCGA-DK-A1AC-01 19 53644301 53644301 C T ZNF347 Missense_Mutation p.E595K 0.11 deleterious(0.02) possibly_damaging(0.481) TCGA-DK-A1AC-01 19 53656992 53656992 G A ZNF347 Silent p.L3L 0.11 TCGA-DK-A1AC-01 19 54185411 54185411 G T MIR519C 5'Flank 0.18 TCGA-DK-A1AC-01 19 54201673 54201673 C T MIR523 RNA 0.12 TCGA-DK-A1AC-01 19 54257304 54257304 C G MIR527 RNA 0.13 TCGA-DK-A1AC-01 19 54628017 54628017 C T PRPF31 Silent p.I279I 0.09 TCGA-DK-A1AC-01 19 54649696 54649696 G T CNOT3 Nonsense_Mutation p.E252* 0.20 TCGA-DK-A1AC-01 19 54664083 54664083 C T TMC4 Missense_Mutation p.R700Q 0.11 tolerated(1) benign(0.001) TCGA-DK-A1AC-01 19 54666432 54666432 G A TMC4 Silent p.V498V 0.10 TCGA-DK-A1AC-01 19 54973372 54973372 G A LENG9 Silent p.L468L 0.49 TCGA-DK-A1AC-01 19 55508802 55508802 G A NLRP2 Silent p.V999V 0.54 TCGA-DK-A1AC-01 19 55670468 55670468 G A DNAAF3 Missense_Mutation p.P597S 0.62 tolerated_low_confidence(0.08) benign(0.289) TCGA-DK-A1AC-01 19 55686347 55686347 G C SYT5 Missense_Mutation p.I243M 0.68 deleterious(0.01) probably_damaging(0.975) TCGA-DK-A1AC-01 19 55912936 55912936 G A UBE2S Silent p.S179S 0.11 TCGA-DK-A1AC-01 19 55993070 55993070 C T ZNF628 Silent p.H170H 0.11 TCGA-DK-A1AC-01 19 56369323 56369323 C A NLRP4 Missense_Mutation p.F188L 0.08 tolerated(0.58) benign(0.048) TCGA-DK-A1AC-01 19 56925325 56925325 C T ZNF583 Intron 0.10 TCGA-DK-A1AC-01 19 57132856 57132856 C G ZNF71 Silent p.L67L 0.11 TCGA-DK-A1AC-01 19 57665708 57665708 G C DUXA 3'UTR 0.15 TCGA-DK-A1AC-01 19 57743573 57743573 G C AURKC Missense_Mutation p.E93Q 0.07 deleterious(0) probably_damaging(0.939) TCGA-DK-A1AC-01 19 57911012 57911012 G C ZNF548 Missense_Mutation p.E465Q 0.10 deleterious(0.02) benign(0.088) TCGA-DK-A1AC-01 19 57988846 57988846 C T ZNF772 5'UTR 0.18 TCGA-DK-A1AC-01 19 58187526 58187526 C A ZSCAN4 Missense_Mutation p.L5I 0.13 tolerated(0.06) benign(0.077) TCGA-DK-A1AC-01 19 58421054 58421054 C T ZNF417 Missense_Mutation p.E198K 0.33 tolerated(0.96) benign(0.01) TCGA-DK-A1AC-01 19 58452322 58452322 G A ZNF256 Silent p.L618L 0.21 TCGA-DK-A1AC-01 19 58453721 58453721 C G ZNF256 Missense_Mutation p.R152T 0.24 tolerated(0.11) possibly_damaging(0.893) TCGA-DK-A1AC-01 19 58639131 58639131 C T ZNF329 3'UTR 0.35 TCGA-DK-A1AC-01 19 58773587 58773587 C G ZNF544 Missense_Mutation p.Q539E 0.53 deleterious(0.05) probably_damaging(0.984) TCGA-DK-A1AC-01 19 58858336 58858336 G A A1BG 3'UTR 0.53 TCGA-DK-A1AC-01 19 6187358 6187358 G A ACSBG2 Silent p.K535K 0.21 TCGA-DK-A1AC-01 19 6306799 6306799 G A ACER1 Missense_Mutation p.R241C 0.21 tolerated(0.07) benign(0.011) TCGA-DK-A1AC-01 19 6364487 6364487 C T CLPP Missense_Mutation p.A131V 0.27 deleterious(0) probably_damaging(0.989) TCGA-DK-A1AC-01 19 6468033 6468033 C T DENND1C Missense_Mutation p.D630N 0.39 deleterious_low_confidence(0.01) benign(0.425) TCGA-DK-A1AC-01 19 6746547 6746547 G C TRIP10 Missense_Mutation p.E357Q 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-DK-A1AC-01 19 6829860 6829860 C T VAV1 Silent p.L443L 0.21 TCGA-DK-A1AC-01 19 7152923 7152923 G A INSR Missense_Mutation p.S682L 0.31 tolerated(0.68) benign(0.005) TCGA-DK-A1AC-01 19 7184523 7184523 G A INSR Silent p.L260L 0.14 TCGA-DK-A1AC-01 19 7531822 7531822 G A ARHGEF18 Missense_Mutation p.E787K 0.14 tolerated(0.39) benign(0.199) TCGA-DK-A1AC-01 19 7743014 7743014 C G C19orf59 Nonsense_Mutation p.S70* 0.26 TCGA-DK-A1AC-01 19 7963803 7963812 CACCAGTTTC - LRRC8E Frame_Shift_Del p.T133Gfs*52 0.46 TCGA-DK-A1AC-01 19 9325375 9325375 G C OR7D4 Missense_Mutation p.L47V 0.19 deleterious(0.03) possibly_damaging(0.76) TCGA-DK-A1AC-01 19 9677729 9677729 G A ZNF121 Silent p.F20F 0.27 TCGA-DK-A1AC-01 19 9763894 9763894 G C ZNF562 Missense_Mutation p.H338D 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 1 100327239 100327239 C A AGL Missense_Mutation p.S88Y 0.18 deleterious(0) benign(0.234) TCGA-DK-A1AC-01 1 10067689 10067689 G A RBP7 Silent p.Q45Q 0.24 TCGA-DK-A1AC-01 1 10195078 10195078 T A UBE4B Missense_Mutation p.F686L 0.18 deleterious(0.01) probably_damaging(0.941) TCGA-DK-A1AC-01 1 107600088 107600089 - AGCGCGG PRMT6 Frame_Shift_Ins p.F253Gfs*169 0.64 TCGA-DK-A1AC-01 1 107600219 107600219 G A PRMT6 Silent p.V294V 0.65 TCGA-DK-A1AC-01 1 109171130 109171130 G A FAM102B Missense_Mutation p.E256K 0.26 tolerated(0.17) benign(0.193) TCGA-DK-A1AC-01 1 109756738 109756738 G C SARS Missense_Mutation p.E42Q 0.24 tolerated(0.33) benign(0.016) TCGA-DK-A1AC-01 1 110129467 110129467 G C GNAI3 Missense_Mutation p.K279N 0.27 tolerated(0.16) benign(0.009) TCGA-DK-A1AC-01 1 110213924 110213924 G A GSTM2 Missense_Mutation p.E126K 0.47 tolerated(0.12) benign(0.014) TCGA-DK-A1AC-01 1 110766114 110766114 G A KCNC4 Missense_Mutation p.E403K 0.20 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 1 112042563 112042563 G T ADORA3 Intron 0.20 TCGA-DK-A1AC-01 1 112299299 112299299 G A DDX20 Silent p.G111G 0.21 TCGA-DK-A1AC-01 1 114242367 114242367 G C PHTF1 Missense_Mutation p.L701V 0.21 tolerated(0.2) benign(0.222) TCGA-DK-A1AC-01 1 114447326 114447326 C T AP4B1 Missense_Mutation p.G5D 0.53 deleterious(0.01) probably_damaging(0.974) TCGA-DK-A1AC-01 1 1153867 1153867 C T SDF4 Missense_Mutation p.D295N 0.28 tolerated(0.08) possibly_damaging(0.451) TCGA-DK-A1AC-01 1 116245548 116245548 G A CASQ2 Silent p.V336V 0.33 TCGA-DK-A1AC-01 1 1178268 1178268 C G FAM132A Missense_Mutation p.E253Q 0.09 deleterious(0.01) possibly_damaging(0.886) TCGA-DK-A1AC-01 1 117910898 117910898 G C MAN1A2 Missense_Mutation p.L31F 0.24 tolerated(0.46) benign(0.016) TCGA-DK-A1AC-01 1 118624072 118624072 C T SPAG17 Missense_Mutation p.M652I 0.23 tolerated(0.16) benign(0.029) TCGA-DK-A1AC-01 1 11882771 11882771 G A CLCN6 Silent p.Q122Q 0.30 TCGA-DK-A1AC-01 1 120539319 120539319 G A NOTCH2 Intron 0.24 TCGA-DK-A1AC-01 1 1225697 1225697 C T SCNN1D Missense_Mutation p.S570F 0.23 deleterious(0.02) benign(0.413) TCGA-DK-A1AC-01 1 1226989 1226989 G A SCNN1D Silent p.%3D 0.63 TCGA-DK-A1AC-01 1 12304593 12304593 G A VPS13D Splice_Site p.X123_splice 0.45 TCGA-DK-A1AC-01 1 12387712 12387712 G A VPS13D Silent p.L2666L 0.26 TCGA-DK-A1AC-01 1 1244841 1244841 C T PUSL1 Missense_Mutation p.R111W 0.55 deleterious(0) possibly_damaging(0.849) TCGA-DK-A1AC-01 1 1290312 1290312 G A MXRA8 Silent p.A233A 0.27 TCGA-DK-A1AC-01 1 1334489 1334489 C T CCNL2 Silent p.S66S 0.11 TCGA-DK-A1AC-01 1 14105194 14105194 G A PRDM2 Missense_Mutation p.E302K 0.21 possibly_damaging(0.882) TCGA-DK-A1AC-01 1 145075044 145075044 C T PDE4DIP Missense_Mutation p.D84N 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.728) TCGA-DK-A1AC-01 1 145293493 145293493 G A NBPF10 Missense_Mutation p.E30K 0.05 possibly_damaging(0.608) TCGA-DK-A1AC-01 1 145549259 145549259 G A ANKRD35 5'UTR 0.31 TCGA-DK-A1AC-01 1 145562892 145562892 T G ANKRD35 Nonsense_Mutation p.Y860* 0.73 TCGA-DK-A1AC-01 1 145688151 145688151 G A RNF115 Silent p.Q282Q 0.30 TCGA-DK-A1AC-01 1 1459719 1459719 C T ATAD3A Missense_Mutation p.R434W 0.11 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AC-01 1 147408770 147408770 C G GPR89B Missense_Mutation p.F24L 0.15 deleterious(0) benign(0.325) TCGA-DK-A1AC-01 1 149785205 149785205 G A HIST2H3D Missense_Mutation p.S11L 0.33 deleterious_low_confidence(0.01) benign(0.003) TCGA-DK-A1AC-01 1 150193049 150193049 G A ANP32E Nonsense_Mutation p.R251* 0.67 TCGA-DK-A1AC-01 1 150532646 150532646 G A ADAMTSL4 Missense_Mutation p.E1067K 0.78 deleterious(0.03) benign(0.342) TCGA-DK-A1AC-01 1 150550774 150550774 G A MCL1 Silent p.I294I 0.12 TCGA-DK-A1AC-01 1 150938508 150938508 G A CERS2 3'UTR 0.13 TCGA-DK-A1AC-01 1 150981133 150981133 C G PRUNE Missense_Mutation p.R9G 0.14 deleterious(0.03) benign(0.011) TCGA-DK-A1AC-01 1 151021023 151021023 C T C1orf56 Nonsense_Mutation p.R234* 0.70 TCGA-DK-A1AC-01 1 151288752 151288752 G A PI4KB Missense_Mutation p.S81F 0.10 deleterious_low_confidence(0.02) benign(0.319) TCGA-DK-A1AC-01 1 151298777 151298777 G A PI4KB 5'UTR 0.79 TCGA-DK-A1AC-01 1 151339220 151339220 G A SELENBP1 Silent p.F214F 0.18 TCGA-DK-A1AC-01 1 151372617 151372617 G A PSMB4 Missense_Mutation p.D101N 0.12 deleterious(0) probably_damaging(0.995) TCGA-DK-A1AC-01 1 151542174 151542174 G C TUFT1 Missense_Mutation p.K174N 0.13 deleterious(0.02) benign(0.444) TCGA-DK-A1AC-01 1 151743617 151743617 C T OAZ3 Silent p.L165L 0.77 TCGA-DK-A1AC-01 1 151785508 151785508 G T RORC Silent p.I400I 0.74 TCGA-DK-A1AC-01 1 151826107 151826107 C T THEM5 5'UTR 0.50 TCGA-DK-A1AC-01 1 152083964 152083964 G A TCHH Nonsense_Mutation p.Q577* 0.29 TCGA-DK-A1AC-01 1 152276091 152276091 G A FLG Silent p.T3757T 0.70 TCGA-DK-A1AC-01 1 153005165 153005165 C T SPRR1B 3'UTR 0.11 TCGA-DK-A1AC-01 1 153507246 153507246 C T S100A6 Missense_Mutation p.E67K 0.53 deleterious(0.02) benign(0.147) TCGA-DK-A1AC-01 1 154955992 154955992 G A FLAD1 5'UTR 0.58 TCGA-DK-A1AC-01 1 154988999 154988999 C T ZBTB7B Silent p.L520L 0.16 TCGA-DK-A1AC-01 1 155161824 155161824 G A MUC1 Silent p.V103V 0.15 TCGA-DK-A1AC-01 1 155717142 155717142 C T GON4L 3'Flank 0.36 TCGA-DK-A1AC-01 1 155823271 155823271 G A GON4L Nonsense_Mutation p.Q101* 0.12 TCGA-DK-A1AC-01 1 156051412 156051412 C T MEX3A Silent p.L126L 1.00 TCGA-DK-A1AC-01 1 156256052 156256052 G A TMEM79 Silent p.G253G 0.20 TCGA-DK-A1AC-01 1 156263941 156263941 C T C1orf85 Silent p.L222L 0.71 TCGA-DK-A1AC-01 1 156280783 156280783 C T CCT3 Silent p.Q453Q 0.08 TCGA-DK-A1AC-01 1 156354598 156354598 G A RHBG 3'UTR 0.80 TCGA-DK-A1AC-01 1 156563376 156563376 G A APOA1BP Intron 0.72 TCGA-DK-A1AC-01 1 157550118 157550118 C T FCRL4 Missense_Mutation p.E424K 0.72 tolerated(0.82) benign(0.01) TCGA-DK-A1AC-01 1 158584040 158584040 C G SPTA1 Intron 0.10 TCGA-DK-A1AC-01 1 15874821 15874821 G C DNAJC16 Missense_Mutation p.L307F 0.33 tolerated(0.06) benign(0.238) TCGA-DK-A1AC-01 1 15956939 15956939 C T DDI2 Nonsense_Mutation p.Q130* 0.17 TCGA-DK-A1AC-01 1 159842861 159842861 C T CCDC19 Missense_Mutation p.E484K 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 1 160063790 160063790 G T IGSF8 Missense_Mutation p.S205Y 0.41 deleterious(0.01) benign(0.11) TCGA-DK-A1AC-01 1 160163575 160163575 G C CASQ1 Missense_Mutation p.D135H 0.18 deleterious(0.01) possibly_damaging(0.836) TCGA-DK-A1AC-01 1 160261692 160261692 C T COPA Missense_Mutation p.E1068K 0.76 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AC-01 1 16053943 16053943 C T PLEKHM2 Missense_Mutation p.S459L 0.22 tolerated_low_confidence(0.17) benign(0.002) TCGA-DK-A1AC-01 1 160681499 160681499 G A CD48 Silent p.L19L 0.75 TCGA-DK-A1AC-01 1 161641245 161641245 C G FCGR2B Missense_Mutation p.S66C 0.15 tolerated(0.15) possibly_damaging(0.803) TCGA-DK-A1AC-01 1 161641318 161641318 C G FCGR2B Silent p.L90L 0.14 TCGA-DK-A1AC-01 1 161641408 161641408 C T FCGR2B Silent p.L120L 0.14 TCGA-DK-A1AC-01 1 161695648 161695648 C T FCRLB Silent p.F115F 0.08 TCGA-DK-A1AC-01 1 161696695 161696695 C T FCRLB Silent p.V259V 0.74 TCGA-DK-A1AC-01 1 16259146 16259146 G A SPEN Silent p.L2137L 0.32 TCGA-DK-A1AC-01 1 16259289 16259289 C T SPEN Missense_Mutation p.S2185F 0.48 possibly_damaging(0.613) TCGA-DK-A1AC-01 1 16269163 16269163 C T ZBTB17 Silent p.V633V 0.53 TCGA-DK-A1AC-01 1 16269661 16269661 G A ZBTB17 Missense_Mutation p.H576Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AC-01 1 16905879 16905879 G A NBPF1 Missense_Mutation p.S537F 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A1AC-01 1 16910099 16910099 C G NBPF1 Missense_Mutation p.E361Q 0.07 deleterious(0.04) benign(0.279) TCGA-DK-A1AC-01 1 169351514 169351514 G T BLZF1 Nonsense_Mutation p.E338* 0.22 TCGA-DK-A1AC-01 1 169696928 169696928 C G SELE Missense_Mutation p.E474Q 0.56 tolerated(0.33) benign(0.05) TCGA-DK-A1AC-01 1 1720630 1720630 C T GNB1 Missense_Mutation p.E260K 0.56 deleterious(0) probably_damaging(0.923) TCGA-DK-A1AC-01 1 1720636 1720636 C T GNB1 Missense_Mutation p.D258N 0.12 deleterious(0.01) possibly_damaging(0.654) TCGA-DK-A1AC-01 1 17257888 17257888 G A CROCC Missense_Mutation p.E318K 0.58 probably_damaging(0.973) TCGA-DK-A1AC-01 1 173916678 173916678 G A RC3H1 Nonsense_Mutation p.Q856* 0.54 TCGA-DK-A1AC-01 1 17409048 17409048 C T PADI2 Missense_Mutation p.E384K 0.27 tolerated(0.8) benign(0.079) TCGA-DK-A1AC-01 1 176012859 176012859 G A RFWD2 Missense_Mutation p.S506L 0.23 tolerated(0.34) benign(0.03) TCGA-DK-A1AC-01 1 179320459 179320459 C G SOAT1 Missense_Mutation p.F486L 0.25 tolerated(0.46) benign(0.311) TCGA-DK-A1AC-01 1 179339182 179339182 G A AXDND1 Missense_Mutation p.D115N 0.22 deleterious(0.01) possibly_damaging(0.811) TCGA-DK-A1AC-01 1 179609578 179609578 G C TDRD5 Missense_Mutation p.E600Q 0.18 deleterious(0.04) benign(0.061) TCGA-DK-A1AC-01 1 180080149 180080149 G A CEP350 Silent p.E3069E 0.21 TCGA-DK-A1AC-01 1 181058788 181058788 G A IER5 Silent p.P250P 0.44 TCGA-DK-A1AC-01 1 182571103 182571103 C T RGS16 Missense_Mutation p.E129K 0.47 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 1 182845653 182845653 C T DHX9 Missense_Mutation p.P701S 0.43 tolerated(0.18) benign(0.303) TCGA-DK-A1AC-01 1 185171807 185171807 C G SWT1 Missense_Mutation p.N515K 0.32 deleterious(0) possibly_damaging(0.742) TCGA-DK-A1AC-01 1 185276692 185276692 C T IVNS1ABP Missense_Mutation p.D154N 0.45 tolerated(0.08) possibly_damaging(0.461) TCGA-DK-A1AC-01 1 185703826 185703826 G A HMCN1 5'UTR 0.27 TCGA-DK-A1AC-01 1 185703957 185703957 C G HMCN1 Missense_Mutation p.L16V 0.49 possibly_damaging(0.636) TCGA-DK-A1AC-01 1 18661457 18661457 G T IGSF21 Missense_Mutation p.R126M 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 1 186946811 186946811 G T PLA2G4A Silent p.L617L 0.25 TCGA-DK-A1AC-01 1 18809398 18809398 C A KLHDC7A Silent p.G641G 0.50 TCGA-DK-A1AC-01 1 19186032 19186032 G C TAS1R2 Silent p.L41L 0.48 TCGA-DK-A1AC-01 1 193074729 193074729 G C GLRX2 Missense_Mutation p.L14V 0.19 tolerated_low_confidence(0.26) benign(0.005) TCGA-DK-A1AC-01 1 19510379 19510379 C T UBR4 Missense_Mutation p.E704K 0.26 benign(0.351) TCGA-DK-A1AC-01 1 19559255 19559255 C G EMC1 Missense_Mutation p.E549Q 0.23 tolerated(0.08) possibly_damaging(0.493) TCGA-DK-A1AC-01 1 196342316 196342316 C T KCNT2 Missense_Mutation p.A453T 0.22 deleterious(0.03) possibly_damaging(0.64) TCGA-DK-A1AC-01 1 197145778 197145778 C T ZBTB41 Missense_Mutation p.D599N 0.46 tolerated(0.19) benign(0.058) TCGA-DK-A1AC-01 1 198288556 198288556 T G NEK7 Silent p.V271V 0.23 TCGA-DK-A1AC-01 1 200377338 200377338 G A ZNF281 Missense_Mutation p.P499L 0.23 deleterious(0.01) benign(0.115) TCGA-DK-A1AC-01 1 200878016 200878016 G A C1orf106 Missense_Mutation p.D245N 0.18 deleterious(0) probably_damaging(0.995) TCGA-DK-A1AC-01 1 200880945 200880945 G A C1orf106 Missense_Mutation p.E442K 0.32 tolerated(0.29) benign(0.118) TCGA-DK-A1AC-01 1 201182530 201182530 G A IGFN1 Missense_Mutation p.E2837K 0.41 benign(0.102) TCGA-DK-A1AC-01 1 201489431 201489431 C T RPS10P7 RNA 0.31 TCGA-DK-A1AC-01 1 202318026 202318026 G A PPP1R12B Missense_Mutation p.R16Q 0.30 deleterious(0) probably_damaging(0.972) TCGA-DK-A1AC-01 1 203276346 203276346 G A BTG2 Missense_Mutation p.G86E 0.22 deleterious(0) probably_damaging(0.919) TCGA-DK-A1AC-01 1 204125005 204125005 G A REN Silent p.I334I 0.44 TCGA-DK-A1AC-01 1 205628264 205628264 G A SLC45A3 3'UTR 0.65 TCGA-DK-A1AC-01 1 205767810 205767810 G A SLC41A1 Silent p.L277L 0.17 TCGA-DK-A1AC-01 1 206904547 206904547 C T MAPKAPK2 Missense_Mutation p.R278C 0.24 deleterious(0) probably_damaging(0.97) TCGA-DK-A1AC-01 1 207317297 207317297 G A C4BPA Missense_Mutation p.G527R 0.36 deleterious(0) benign(0.073) TCGA-DK-A1AC-01 1 208252706 208252706 C T PLXNA2 Missense_Mutation p.E829K 0.73 tolerated(0.15) benign(0.321) TCGA-DK-A1AC-01 1 21167472 21167472 A G EIF4G3 Missense_Mutation p.V1263A 0.29 deleterious(0) benign(0.259) TCGA-DK-A1AC-01 1 211842601 211842601 C T NEK2 Missense_Mutation p.R280K 0.24 tolerated(0.88) benign(0) TCGA-DK-A1AC-01 1 212118233 212118233 C T INTS7 Missense_Mutation p.E832K 0.24 deleterious(0) probably_damaging(0.975) TCGA-DK-A1AC-01 1 2125482 2125482 C T C1orf86 Silent p.L51L 0.29 TCGA-DK-A1AC-01 1 216019244 216019244 A G USH2A Missense_Mutation p.Y2993H 0.21 probably_damaging(1) TCGA-DK-A1AC-01 1 220146632 220146632 C G EPRS Missense_Mutation p.E1398Q 0.41 tolerated(0.43) benign(0.083) TCGA-DK-A1AC-01 1 221057702 221057702 G A HLX Missense_Mutation p.E375K 0.50 deleterious(0.02) benign(0.294) TCGA-DK-A1AC-01 1 22173050 22173050 G A HSPG2 Missense_Mutation p.S2736L 0.21 probably_damaging(0.95) TCGA-DK-A1AC-01 1 22173059 22173059 G A HSPG2 Missense_Mutation p.S2733L 0.21 possibly_damaging(0.74) TCGA-DK-A1AC-01 1 22178312 22178312 A T HSPG2 Silent p.T2326T 0.24 TCGA-DK-A1AC-01 1 221875931 221875931 C T DUSP10 Missense_Mutation p.M424I 0.61 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1AC-01 1 224492452 224492452 C T NVL Missense_Mutation p.D271N 0.17 deleterious(0.02) possibly_damaging(0.754) TCGA-DK-A1AC-01 1 2268254 2268254 G A MORN1 Nonsense_Mutation p.Q358* 0.41 TCGA-DK-A1AC-01 1 228505341 228505341 G A OBSCN Missense_Mutation p.E5537K 0.32 probably_damaging(0.998) TCGA-DK-A1AC-01 1 228582712 228582712 C T TRIM11 Silent p.E367E 0.53 TCGA-DK-A1AC-01 1 228645368 228645386 AGACCGGGGCGCCGGCGCC - HIST3H2A Frame_Shift_Del p.G45Ifs*9 0.74 TCGA-DK-A1AC-01 1 230486730 230486730 A G PGBD5 Missense_Mutation p.C221R 0.28 tolerated(0.07) probably_damaging(0.991) TCGA-DK-A1AC-01 1 230845940 230845940 C T AGT Silent p.L219L 0.39 TCGA-DK-A1AC-01 1 235747067 235747067 C G GNG4 Missense_Mutation p.K24N 0.52 deleterious(0) probably_damaging(0.965) TCGA-DK-A1AC-01 1 235747078 235747078 C T GNG4 Missense_Mutation p.E21K 0.52 deleterious(0.05) probably_damaging(0.93) TCGA-DK-A1AC-01 1 236228224 236228224 G A NID1 Silent p.F52F 0.61 TCGA-DK-A1AC-01 1 236557680 236557680 C T EDARADD 5'UTR 0.31 TCGA-DK-A1AC-01 1 236738083 236738083 C G HEATR1 Missense_Mutation p.E1069Q 0.53 deleterious(0.05) probably_damaging(0.968) TCGA-DK-A1AC-01 1 23696057 23696057 G A C1orf213 Silent p.L89L 0.14 TCGA-DK-A1AC-01 1 243480080 243480080 C T SDCCAG8 Missense_Mutation p.A318V 0.36 tolerated(0.11) benign(0.073) TCGA-DK-A1AC-01 1 24406673 24406673 C T MYOM3 Missense_Mutation p.D807N 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-DK-A1AC-01 1 244218572 244218572 G C ZBTB18 Missense_Mutation p.C499S 0.23 tolerated(0.24) possibly_damaging(0.852) TCGA-DK-A1AC-01 1 246729307 246729307 G A TFB2M Missense_Mutation p.S45F 0.17 deleterious(0) possibly_damaging(0.799) TCGA-DK-A1AC-01 1 24768670 24768670 C T NIPAL3 Silent p.F96F 0.19 TCGA-DK-A1AC-01 1 248039263 248039263 C T TRIM58 Silent p.R311R 0.33 TCGA-DK-A1AC-01 1 248637237 248637237 G A OR2T3 Missense_Mutation p.D196N 0.43 tolerated(0.05) benign(0.066) TCGA-DK-A1AC-01 1 2520475 2520475 C G FAM213B Missense_Mutation p.P222R 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 1 2524269 2524269 C T MMEL1 Intron 0.52 TCGA-DK-A1AC-01 1 26190213 26190213 G A PAQR7 Missense_Mutation p.P40S 0.29 tolerated(0.43) benign(0.002) TCGA-DK-A1AC-01 1 26503992 26503992 G A CNKSR1 5'UTR 0.38 TCGA-DK-A1AC-01 1 26509694 26509694 G A CNKSR1 Missense_Mutation p.E211K 0.46 deleterious(0.04) benign(0.055) TCGA-DK-A1AC-01 1 26610630 26610630 C T UBXN11 Intron 0.28 TCGA-DK-A1AC-01 1 27121287 27121287 C T PIGV Silent p.L254L 0.26 TCGA-DK-A1AC-01 1 27124267 27124267 C T PIGV Silent p.L472L 0.23 TCGA-DK-A1AC-01 1 27239897 27239897 C T NR0B2 Intron 0.24 TCGA-DK-A1AC-01 1 27700864 27700864 C A FCN3 Missense_Mutation p.G57V 0.28 deleterious(0) probably_damaging(0.985) TCGA-DK-A1AC-01 1 27875316 27875316 C A AHDC1 Missense_Mutation p.G1104V 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A1AC-01 1 27939500 27939500 G C FGR Missense_Mutation p.F505L 0.18 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 1 27950343 27950343 C T FGR Missense_Mutation p.G29R 0.28 tolerated_low_confidence(0.18) benign(0.013) TCGA-DK-A1AC-01 1 27950351 27950351 C A FGR Missense_Mutation p.R26I 0.33 tolerated_low_confidence(0.14) benign(0.157) TCGA-DK-A1AC-01 1 28206495 28206495 C T THEMIS2 Silent p.L192L 0.33 TCGA-DK-A1AC-01 1 28920495 28920495 G A RAB42 Missense_Mutation p.D62N 0.64 tolerated(0.56) benign(0.002) TCGA-DK-A1AC-01 1 32092484 32092484 C T HCRTR1 Missense_Mutation p.S394F 0.26 deleterious(0.01) possibly_damaging(0.83) TCGA-DK-A1AC-01 1 32279666 32279666 C G SPOCD1 Missense_Mutation p.K423N 0.45 deleterious(0) possibly_damaging(0.525) TCGA-DK-A1AC-01 1 32670814 32670814 G A CCDC28B Missense_Mutation p.E190K 0.17 deleterious(0.01) possibly_damaging(0.844) TCGA-DK-A1AC-01 1 3319489 3319489 G C PRDM16 Missense_Mutation p.E271Q 0.16 tolerated(0.15) benign(0.045) TCGA-DK-A1AC-01 1 33245125 33245125 C T YARS Splice_Site p.X445_splice 0.29 TCGA-DK-A1AC-01 1 33252626 33252626 C T YARS Silent p.L245L 0.55 TCGA-DK-A1AC-01 1 33959815 33959815 C T ZSCAN20 Intron 0.17 TCGA-DK-A1AC-01 1 35320609 35320610 - C SMIM12 3'UTR 0.10 TCGA-DK-A1AC-01 1 3542350 3542350 G A TPRG1L Missense_Mutation p.D123N 0.18 tolerated(0.1) benign(0.113) TCGA-DK-A1AC-01 1 3547608 3547608 G A WRAP73 Silent p.F438F 0.35 TCGA-DK-A1AC-01 1 35476590 35476590 C T ZMYM6 Silent p.L370L 0.25 TCGA-DK-A1AC-01 1 35575944 35575944 C T ZMYM1 Missense_Mutation p.S286L 0.22 deleterious_low_confidence(0) benign(0.33) TCGA-DK-A1AC-01 1 35972601 35972601 G C KIAA0319L Missense_Mutation p.S93C 0.19 deleterious(0.01) possibly_damaging(0.471) TCGA-DK-A1AC-01 1 36181317 36181317 G A C1orf216 Silent p.F202F 0.26 TCGA-DK-A1AC-01 1 36643602 36643602 C A MAP7D1 Missense_Mutation p.S503Y 0.17 probably_damaging(0.971) TCGA-DK-A1AC-01 1 39352269 39352269 C T RHBDL2 Silent p.L273L 0.22 TCGA-DK-A1AC-01 1 39757669 39757669 G A MACF1 Missense_Mutation p.E630K 0.46 possibly_damaging(0.793) TCGA-DK-A1AC-01 1 39919397 39919397 G C MACF1 Missense_Mutation p.E4862Q 0.51 probably_damaging(0.994) TCGA-DK-A1AC-01 1 39950348 39950348 G A MACF1 Missense_Mutation p.D5328N 0.21 benign(0.283) TCGA-DK-A1AC-01 1 40041525 40041525 G A PABPC4 Silent p.P33P 0.24 TCGA-DK-A1AC-01 1 40929203 40929203 C T ZFP69B Missense_Mutation p.S516L 0.21 deleterious(0) probably_damaging(0.966) TCGA-DK-A1AC-01 1 41283961 41283961 C T KCNQ4 Silent p.I177I 0.45 TCGA-DK-A1AC-01 1 41949827 41949827 G A EDN2 Missense_Mutation p.H38Y 0.32 deleterious(0.01) benign(0.177) TCGA-DK-A1AC-01 1 42647606 42647606 G C FOXJ3 Missense_Mutation p.P579A 0.23 tolerated(0.33) benign(0.039) TCGA-DK-A1AC-01 1 42671497 42671497 C T FOXJ3 Missense_Mutation p.G189E 0.47 tolerated(0.35) benign(0.145) TCGA-DK-A1AC-01 1 42921666 42921666 C T ZMYND12 Translation_Start_Site p.M1? 0.19 tolerated_low_confidence(0.07) benign(0.026) TCGA-DK-A1AC-01 1 43213045 43213045 G A LEPRE1 Silent p.F651F 0.28 TCGA-DK-A1AC-01 1 44019601 44019601 C T PTPRF Missense_Mutation p.S123L 0.38 tolerated(0.14) benign(0.066) TCGA-DK-A1AC-01 1 44477385 44477385 G A SLC6A9 Missense_Mutation p.L33F 0.22 tolerated_low_confidence(0.25) possibly_damaging(0.587) TCGA-DK-A1AC-01 1 45251772 45251772 C T BEST4 Missense_Mutation p.D204N 0.44 tolerated(0.17) probably_damaging(0.966) TCGA-DK-A1AC-01 1 45266717 45266717 G A PLK3 Missense_Mutation p.E110K 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 1 46073665 46073665 C T NASP Missense_Mutation p.S361L 0.09 tolerated_low_confidence(0.07) benign(0.008) TCGA-DK-A1AC-01 1 46211827 46211827 C A IPP Missense_Mutation p.G86V 0.25 tolerated(0.22) benign(0.007) TCGA-DK-A1AC-01 1 47024307 47024307 C T MKNK1 Silent p.R446R 0.46 TCGA-DK-A1AC-01 1 47564903 47564903 G A CYP4Z1 Silent p.Q338Q 0.27 TCGA-DK-A1AC-01 1 52344197 52344197 C T NRD1 Missense_Mutation p.E31K 0.21 tolerated_low_confidence(0.45) unknown(0) TCGA-DK-A1AC-01 1 52805846 52805846 G A ZFYVE9 Silent p.V1294V 0.20 TCGA-DK-A1AC-01 1 54428058 54428058 C T LRRC42 Silent p.C301C 0.19 TCGA-DK-A1AC-01 1 55352603 55352603 G A DHCR24 Missense_Mutation p.P64S 0.29 tolerated(0.06) probably_damaging(0.988) TCGA-DK-A1AC-01 1 55352654 55352654 C T DHCR24 Missense_Mutation p.D47N 0.30 tolerated(0.32) benign(0.089) TCGA-DK-A1AC-01 1 57320598 57320598 C T C8A Silent p.I8I 0.52 TCGA-DK-A1AC-01 1 6195343 6195343 G A CHD5 Silent p.N939N 0.25 TCGA-DK-A1AC-01 1 63113920 63113920 C G DOCK7 Missense_Mutation p.D197H 0.21 deleterious(0) possibly_damaging(0.819) TCGA-DK-A1AC-01 1 63920112 63920112 G A ITGB3BP Silent p.L161L 0.20 TCGA-DK-A1AC-01 1 64643416 64643416 C T ROR1 Silent p.L564L 0.48 TCGA-DK-A1AC-01 1 6640604 6640604 C T ZBTB48 5'UTR 0.20 TCGA-DK-A1AC-01 1 6696217 6696217 C T DNAJC11 Silent p.V538V 0.42 TCGA-DK-A1AC-01 1 67299731 67299731 T A WDR78 Missense_Mutation p.I612L 0.29 deleterious(0.02) benign(0.213) TCGA-DK-A1AC-01 1 67559011 67559011 C G C1orf141 Missense_Mutation p.D294H 0.22 deleterious(0.02) benign(0.032) TCGA-DK-A1AC-01 1 71512801 71512801 C T PTGER3 Missense_Mutation p.E154K 0.60 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 1 77588010 77588011 CC G PIGK Frame_Shift_Del p.M340Ifs*4 0.17 TCGA-DK-A1AC-01 1 79385973 79385973 G A ELTD1 Silent p.F452F 0.25 TCGA-DK-A1AC-01 1 82417698 82417698 G C LPHN2 Missense_Mutation p.G552R 0.41 tolerated(0.08) possibly_damaging(0.894) TCGA-DK-A1AC-01 1 8420690 8420690 C T RERE Missense_Mutation p.M959I 0.19 unknown(0) TCGA-DK-A1AC-01 1 85462597 85462597 A T MCOLN2 5'UTR 0.38 TCGA-DK-A1AC-01 1 86173976 86173976 G A ZNHIT6 5'UTR 0.12 TCGA-DK-A1AC-01 1 87029391 87029391 G C CLCA4 Missense_Mutation p.D166H 0.25 deleterious(0) probably_damaging(0.979) TCGA-DK-A1AC-01 1 8921336 8921336 G A ENO1 3'UTR 0.35 TCGA-DK-A1AC-01 1 89477538 89477538 G A GBP3 Silent p.T347T 0.08 TCGA-DK-A1AC-01 1 89518891 89518891 G A GBP1 3'UTR 0.32 TCGA-DK-A1AC-01 1 92941706 92941706 G A GFI1 Silent p.L383L 0.39 TCGA-DK-A1AC-01 1 93170239 93170239 G A EVI5 Missense_Mutation p.S115F 0.24 deleterious(0) probably_damaging(0.981) TCGA-DK-A1AC-01 1 94033313 94033313 G A BCAR3 Silent p.L690L 0.29 TCGA-DK-A1AC-01 1 94048275 94048275 G A BCAR3 Silent p.L423L 0.27 TCGA-DK-A1AC-01 1 94370097 94370097 G A GCLM Silent p.I58I 0.17 TCGA-DK-A1AC-01 1 9613859 9613859 C T SLC25A33 Silent p.L78L 0.14 TCGA-DK-A1AC-01 1 99157196 99157196 G A SNX7 Missense_Mutation p.D194N 0.19 tolerated(0.21) benign(0.386) TCGA-DK-A1AC-01 20 10620096 10620096 G A JAG1 3'UTR 0.19 TCGA-DK-A1AC-01 20 10625512 10625512 C T JAG1 Silent p.Q781Q 0.34 TCGA-DK-A1AC-01 20 13550189 13550189 C T TASP1 Missense_Mutation p.G178E 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-DK-A1AC-01 20 1629746 1629746 C T SIRPG Missense_Mutation p.E128K 0.22 deleterious(0.04) benign(0.024) TCGA-DK-A1AC-01 20 16348186 16348186 C T KIF16B Missense_Mutation p.D1262N 0.20 tolerated_low_confidence(0.53) benign(0.011) TCGA-DK-A1AC-01 20 16362382 16362382 C T KIF16B Missense_Mutation p.E599K 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1AC-01 20 17479526 17479526 G A BFSP1 Nonsense_Mutation p.Q299* 0.43 TCGA-DK-A1AC-01 20 17950541 17950541 C G MGME1 Silent p.L13L 0.20 TCGA-DK-A1AC-01 20 18162455 18162455 C T CSRP2BP Silent p.S591S 0.14 TCGA-DK-A1AC-01 20 19565642 19565642 G A SLC24A3 Missense_Mutation p.G151R 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 20 21687492 21687492 G A PAX1 Missense_Mutation p.E235K 0.41 deleterious(0.01) benign(0.432) TCGA-DK-A1AC-01 20 23549008 23549008 T C CST9L Missense_Mutation p.Y27C 0.35 deleterious(0.04) possibly_damaging(0.599) TCGA-DK-A1AC-01 20 23728490 23728490 C G CST1 Missense_Mutation p.R130T 0.23 tolerated(0.76) benign(0.073) TCGA-DK-A1AC-01 20 2413155 2413155 C T TGM6 Nonsense_Mutation p.Q663* 0.22 TCGA-DK-A1AC-01 20 24994205 24994205 G A ACSS1 Nonsense_Mutation p.R516* 0.22 TCGA-DK-A1AC-01 20 25426654 25426654 C T GINS1 3'UTR 0.47 TCGA-DK-A1AC-01 20 2795712 2795712 G C C20orf141 5'UTR 0.50 TCGA-DK-A1AC-01 20 2945569 2945569 G C PTPRA Missense_Mutation p.E46Q 0.30 tolerated_low_confidence(0.3) benign(0.062) TCGA-DK-A1AC-01 20 2968991 2968991 G A PTPRA Silent p.Q203Q 0.22 TCGA-DK-A1AC-01 20 30037947 30037947 C A DEFB123 Nonsense_Mutation p.Y58* 0.17 TCGA-DK-A1AC-01 20 30309932 30309932 C T BCL2L1 Silent p.V30V 0.44 TCGA-DK-A1AC-01 20 30432733 30432733 C T FOXS1 Missense_Mutation p.E205K 0.10 deleterious(0.02) benign(0.115) TCGA-DK-A1AC-01 20 30556321 30556321 G A XKR7 Missense_Mutation p.D115N 0.44 deleterious(0) probably_damaging(0.995) TCGA-DK-A1AC-01 20 30745699 30745699 G A TM9SF4 Missense_Mutation p.D478N 0.38 deleterious(0.01) benign(0.281) TCGA-DK-A1AC-01 20 31946862 31946862 G C CDK5RAP1 Missense_Mutation p.S584C 0.13 deleterious(0.01) possibly_damaging(0.669) TCGA-DK-A1AC-01 20 32005554 32005554 C T SNTA1 Silent p.K224K 0.30 TCGA-DK-A1AC-01 20 32251342 32251342 G A C20orf144 Missense_Mutation p.R44K 0.14 tolerated(1) benign(0.004) TCGA-DK-A1AC-01 20 33077105 33077105 G A ITCH Missense_Mutation p.E751K 0.25 tolerated(0.08) possibly_damaging(0.631) TCGA-DK-A1AC-01 20 33114076 33114076 G A DYNLRB1 Missense_Mutation p.E3K 0.12 deleterious(0.02) probably_damaging(0.911) TCGA-DK-A1AC-01 20 33346669 33346669 C T NCOA6 Missense_Mutation p.M194I 0.18 benign(0.026) TCGA-DK-A1AC-01 20 33533875 33533875 G A GSS Silent p.L52L 0.16 TCGA-DK-A1AC-01 20 33591402 33591402 G C TRPC4AP Silent p.L689L 0.15 TCGA-DK-A1AC-01 20 33872046 33872046 G A EIF6 Silent p.L42L 0.19 TCGA-DK-A1AC-01 20 33879833 33879833 C T FAM83C Missense_Mutation p.S92N 0.15 tolerated(0.22) benign(0.038) TCGA-DK-A1AC-01 20 34057761 34057761 G A CEP250 Missense_Mutation p.E300K 0.37 benign(0.024) TCGA-DK-A1AC-01 20 34322864 34322864 G T RBM39 Intron 0.23 TCGA-DK-A1AC-01 20 35627227 35627227 G A RBL1 Nonsense_Mutation p.Q1048* 0.40 TCGA-DK-A1AC-01 20 3649545 3649545 C T ADAM33 3'UTR 0.12 TCGA-DK-A1AC-01 20 3655675 3655675 G A ADAM33 Missense_Mutation p.T111M 0.32 tolerated(0.1) benign(0.119) TCGA-DK-A1AC-01 20 37353482 37353482 G A SLC32A1 Missense_Mutation p.E39K 0.12 deleterious(0.01) possibly_damaging(0.784) TCGA-DK-A1AC-01 20 37576568 37576568 G A FAM83D Missense_Mutation p.G264E 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 20 37576605 37576605 G A FAM83D Silent p.T276T 0.14 TCGA-DK-A1AC-01 20 3891268 3891268 G A PANK2 Silent p.L342L 0.37 TCGA-DK-A1AC-01 20 39990348 39990348 C T EMILIN3 Missense_Mutation p.E621K 0.45 deleterious(0.01) possibly_damaging(0.713) TCGA-DK-A1AC-01 20 4202235 4202235 C T ADRA1D Missense_Mutation p.E552K 0.14 deleterious_low_confidence(0) benign(0.285) TCGA-DK-A1AC-01 20 42143223 42143223 G A L3MBTL1 Intron 0.42 TCGA-DK-A1AC-01 20 43571786 43571786 C T TOMM34 Silent p.Q298Q 0.15 TCGA-DK-A1AC-01 20 43623860 43623860 G A STK4 Missense_Mutation p.E219K 0.21 deleterious(0) probably_damaging(0.99) TCGA-DK-A1AC-01 20 44236675 44236675 G A WFDC9 3'UTR 0.15 TCGA-DK-A1AC-01 20 44330765 44330765 G A WFDC13 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-DK-A1AC-01 20 44691177 44691186 GGTCTGGGGC - NCOA5 Frame_Shift_Del p.G498Vfs*22 0.35 TCGA-DK-A1AC-01 20 44879800 44879800 G A CDH22 Missense_Mutation p.S45L 0.17 tolerated(0.12) possibly_damaging(0.602) TCGA-DK-A1AC-01 20 45976605 45976605 G A ZMYND8 Missense_Mutation p.S27F 0.36 deleterious_low_confidence(0) benign(0.09) TCGA-DK-A1AC-01 20 47649787 47649787 A G ARFGEF2 3'UTR 0.45 TCGA-DK-A1AC-01 20 47675013 47675013 G A CSE1L Missense_Mutation p.D5N 0.15 tolerated(0.07) possibly_damaging(0.467) TCGA-DK-A1AC-01 20 48466215 48466215 C T SLC9A8 Nonsense_Mutation p.Q178* 0.34 TCGA-DK-A1AC-01 20 48808497 48808497 G A CEBPB Silent p.E309E 0.41 TCGA-DK-A1AC-01 20 49212713 49212713 C T FAM65C Silent p.L622L 0.41 TCGA-DK-A1AC-01 20 50401020 50401020 C T SALL4 Silent p.V982V 0.37 TCGA-DK-A1AC-01 20 52788164 52788164 T C CYP24A1 Silent p.K165K 0.18 TCGA-DK-A1AC-01 20 5556510 5556510 G C GPCPD1 Missense_Mutation p.L274V 0.19 tolerated(0.39) possibly_damaging(0.895) TCGA-DK-A1AC-01 20 55918412 55918412 G A SPO11 Missense_Mutation p.D363N 0.35 tolerated(0.41) benign(0.001) TCGA-DK-A1AC-01 20 56993382 56993382 C T VAPB Silent p.S58S 0.15 TCGA-DK-A1AC-01 20 5935298 5935298 G C MCM8 Missense_Mutation p.E100Q 0.18 tolerated(0.11) possibly_damaging(0.638) TCGA-DK-A1AC-01 20 60448896 60448896 G T CDH4 Missense_Mutation p.M330I 0.21 deleterious(0.01) benign(0.118) TCGA-DK-A1AC-01 20 60893546 60893546 G A LAMA5 Silent p.L2401L 0.50 TCGA-DK-A1AC-01 20 60908290 60908290 G A LAMA5 Silent p.L1046L 0.25 TCGA-DK-A1AC-01 20 60910092 60910092 A G LAMA5 Missense_Mutation p.Y823H 0.19 probably_damaging(0.998) TCGA-DK-A1AC-01 20 62338434 62338434 G C ARFRP1 Missense_Mutation p.L4V 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 20 62340319 62340319 G A ZGPAT Silent p.L129L 0.25 TCGA-DK-A1AC-01 20 947851 947851 G A RSPO4 Silent p.G125G 0.26 TCGA-DK-A1AC-01 21 15561684 15561684 C T LIPI Missense_Mutation p.D56N 0.21 tolerated(0.13) probably_damaging(0.975) TCGA-DK-A1AC-01 21 15599290 15599290 G A RBM11 Silent p.L174L 0.20 TCGA-DK-A1AC-01 21 16339706 16339706 G A NRIP1 Silent p.L270L 0.35 TCGA-DK-A1AC-01 21 27326925 27326925 C T APP Missense_Mutation p.E556K 0.32 deleterious(0.01) benign(0.049) TCGA-DK-A1AC-01 21 27423431 27423431 C G APP Missense_Mutation p.E183Q 0.10 deleterious(0) unknown(0) TCGA-DK-A1AC-01 21 30949385 30949385 C G GRIK1 Missense_Mutation p.E677Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 21 31869171 31869171 G A KRTAP19-4 3'UTR 0.20 TCGA-DK-A1AC-01 21 34860800 34860800 G C DNAJC28 Missense_Mutation p.Q301E 0.45 tolerated(0.89) benign(0.008) TCGA-DK-A1AC-01 21 35895867 35895867 G C RCAN1 Missense_Mutation p.L132V 0.37 tolerated(0.51) possibly_damaging(0.699) TCGA-DK-A1AC-01 21 35895991 35895991 G C RCAN1 Silent p.L90L 0.33 TCGA-DK-A1AC-01 21 36252962 36252962 C G RUNX1 Missense_Mutation p.A134P 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 21 37642413 37642413 C T DOPEY2 Nonsense_Mutation p.Q1864* 0.50 TCGA-DK-A1AC-01 21 38593674 38593674 G A DSCR3 3'Flank 0.44 TCGA-DK-A1AC-01 21 38593683 38593683 G A DSCR3 3'Flank 0.49 TCGA-DK-A1AC-01 21 40191551 40191551 G A ETS2 Silent p.E312E 0.23 TCGA-DK-A1AC-01 21 42778893 42778893 G A MX2 Missense_Mutation p.E625K 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1AC-01 21 42821118 42821118 G A MX1 Missense_Mutation p.R443K 0.20 tolerated(0.3) possibly_damaging(0.6) TCGA-DK-A1AC-01 21 43867289 43867289 G C UBASH3A Missense_Mutation p.W657C 0.25 tolerated(0.12) possibly_damaging(0.756) TCGA-DK-A1AC-01 21 43867303 43867303 G T UBASH3A Nonstop_Mutation p.*662Lext*4 0.25 TCGA-DK-A1AC-01 21 45503018 45503018 G C TRAPPC10 Silent p.T691T 0.26 TCGA-DK-A1AC-01 21 45503079 45503079 C T TRAPPC10 Silent p.L712L 0.47 TCGA-DK-A1AC-01 21 45503092 45503092 C T TRAPPC10 Missense_Mutation p.S716L 0.47 deleterious(0.04) benign(0.002) TCGA-DK-A1AC-01 21 45789113 45789113 G A TRPM2 Missense_Mutation p.E220K 0.31 tolerated(0.09) benign(0.285) TCGA-DK-A1AC-01 21 45970525 45970525 T A KRTAP10-2 3'UTR 0.21 TCGA-DK-A1AC-01 22 17072537 17072537 C T CCT8L2 Missense_Mutation p.E302K 0.29 tolerated(1) benign(0.002) TCGA-DK-A1AC-01 22 18566437 18566437 G A PEX26 Silent p.A202A 0.40 TCGA-DK-A1AC-01 22 19418988 19418988 C T HIRA Silent p.L4L 0.33 TCGA-DK-A1AC-01 22 21141329 21141329 G A SERPIND1 Missense_Mutation p.R492K 0.17 tolerated(0.06) possibly_damaging(0.803) TCGA-DK-A1AC-01 22 22517052 22517052 G A IGLV4-60 Missense_Mutation p.E114K 0.42 tolerated(0.35) benign(0.03) TCGA-DK-A1AC-01 22 24159103 24159103 G A SMARCB1 Missense_Mutation p.D259N 0.21 deleterious(0) probably_damaging(0.928) TCGA-DK-A1AC-01 22 24917979 24917979 C T UPB1 Missense_Mutation p.S300L 0.24 deleterious(0) probably_damaging(0.984) TCGA-DK-A1AC-01 22 25747768 25747768 A T LRP5L Nonstop_Mutation p.*253Rext*3 0.26 TCGA-DK-A1AC-01 22 29886470 29886470 G C NEFH Missense_Mutation p.K947N 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DK-A1AC-01 22 30198101 30198101 C T ASCC2 Missense_Mutation p.E484K 0.15 deleterious(0) possibly_damaging(0.864) TCGA-DK-A1AC-01 22 30822716 30822716 G A MTFP1 Missense_Mutation p.E27K 0.28 deleterious(0) probably_damaging(0.986) TCGA-DK-A1AC-01 22 31738885 31738885 G A PATZ1 Nonsense_Mutation p.Q445* 0.19 TCGA-DK-A1AC-01 22 32495203 32495203 C T SLC5A1 Silent p.I438I 0.26 TCGA-DK-A1AC-01 22 36122285 36122285 G A APOL5 Nonsense_Mutation p.W57* 0.20 TCGA-DK-A1AC-01 22 36122301 36122301 G A APOL5 Silent p.L62L 0.49 TCGA-DK-A1AC-01 22 36690984 36690984 C T MYH9 Silent p.T1208T 0.29 TCGA-DK-A1AC-01 22 36697582 36697582 G A MYH9 Nonsense_Mutation p.Q877* 0.17 TCGA-DK-A1AC-01 22 37268449 37268449 C G NCF4 Missense_Mutation p.I203M 0.29 deleterious(0.03) possibly_damaging(0.827) TCGA-DK-A1AC-01 22 37331726 37331726 C T CSF2RB Silent p.F487F 0.26 TCGA-DK-A1AC-01 22 37688736 37688736 G A CYTH4 Missense_Mutation p.D32N 0.49 deleterious(0.02) probably_damaging(1) TCGA-DK-A1AC-01 22 39268249 39268249 G T CBX6 5'UTR 0.50 TCGA-DK-A1AC-01 22 39381814 39381814 C T APOBEC3B Intron 0.28 TCGA-DK-A1AC-01 22 39629484 39629484 G C PDGFB Missense_Mutation p.S69C 0.21 deleterious(0.04) benign(0.009) TCGA-DK-A1AC-01 22 39639936 39639936 G A PDGFB Silent p.L11L 0.25 TCGA-DK-A1AC-01 22 40061947 40061947 C T CACNA1I Missense_Mutation p.S1347L 0.20 deleterious(0) possibly_damaging(0.651) TCGA-DK-A1AC-01 22 40078519 40078519 G A CACNA1I Missense_Mutation p.E1895K 0.33 tolerated(0.2) benign(0.292) TCGA-DK-A1AC-01 22 40343156 40343156 G A GRAP2 Missense_Mutation p.E16K 0.30 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 22 40805700 40805700 G A SGSM3 Silent p.L729L 0.29 TCGA-DK-A1AC-01 22 42084851 42084851 C T NHP2L1 5'UTR 0.26 TCGA-DK-A1AC-01 22 46508670 46508670 T C FLJ27365 3'UTR 0.31 TCGA-DK-A1AC-01 22 46654093 46654093 C G PKDREJ Silent p.L1709L 0.09 TCGA-DK-A1AC-01 22 50635718 50635718 G A TRABD Missense_Mutation p.A157T 0.21 deleterious(0.01) probably_damaging(0.934) TCGA-DK-A1AC-01 2 10101494 10101494 C T GRHL1 Nonsense_Mutation p.Q200* 0.22 TCGA-DK-A1AC-01 2 101648738 101648738 C T TBC1D8 Missense_Mutation p.R628Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 2 10187963 10187963 C T KLF11 Missense_Mutation p.P167S 0.22 tolerated(0.12) benign(0.01) TCGA-DK-A1AC-01 2 105473173 105473180 CGCAGGGC - POU3F3 Frame_Shift_Del p.G404Afs*233 0.65 TCGA-DK-A1AC-01 2 10559935 10559935 G A HPCAL1 Missense_Mutation p.E18K 0.74 tolerated(1) benign(0.001) TCGA-DK-A1AC-01 2 105959589 105959589 C T C2orf49 Missense_Mutation p.S184L 0.34 tolerated(0.29) benign(0.001) TCGA-DK-A1AC-01 2 108608600 108608600 G A SLC5A7 Missense_Mutation p.E73K 0.39 deleterious(0) probably_damaging(0.98) TCGA-DK-A1AC-01 2 109352069 109352069 G C RANBP2 Missense_Mutation p.D163H 0.19 tolerated(0.09) possibly_damaging(0.506) TCGA-DK-A1AC-01 2 109383083 109383083 G A RANBP2 Missense_Mutation p.E2030K 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 2 110332307 110332307 C T SEPT10 Missense_Mutation p.E151K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A1AC-01 2 112550062 112550062 G A ANAPC1 Missense_Mutation p.S1530L 0.19 deleterious(0) benign(0.344) TCGA-DK-A1AC-01 2 112751899 112751899 G A MERTK Silent p.T456T 0.39 TCGA-DK-A1AC-01 2 114256945 114256945 G A FOXD4L1 Missense_Mutation p.E38K 0.42 tolerated(0.07) benign(0.146) TCGA-DK-A1AC-01 2 119604241 119604241 G A EN1 Missense_Mutation p.S168L 0.67 deleterious(0) benign(0.029) TCGA-DK-A1AC-01 2 11964910 11964910 C T LPIN1 Missense_Mutation p.S974L 0.65 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DK-A1AC-01 2 125504879 125504879 G T CNTNAP5 Silent p.G716G 0.37 TCGA-DK-A1AC-01 2 128867254 128867254 C T UGGT1 Missense_Mutation p.S152L 0.40 tolerated(0.3) benign(0.006) TCGA-DK-A1AC-01 2 129026352 129026352 G A HS6ST1 Missense_Mutation p.S207L 0.16 deleterious(0) probably_damaging(0.994) TCGA-DK-A1AC-01 2 135740760 135740760 C TT MAP3K19 Intron 0.36 TCGA-DK-A1AC-01 2 135888197 135888197 C T RAB3GAP1 Missense_Mutation p.S381L 0.23 deleterious(0.01) benign(0.06) TCGA-DK-A1AC-01 2 136743012 136743012 C T DARS Silent p.K9K 0.82 TCGA-DK-A1AC-01 2 141359032 141359032 C T LRP1B Missense_Mutation p.D2326N 0.80 possibly_damaging(0.539) TCGA-DK-A1AC-01 2 149226996 149226996 C G MBD5 Nonsense_Mutation p.S495* 0.31 TCGA-DK-A1AC-01 2 153000393 153000393 C G STAM2 Missense_Mutation p.D218H 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 2 153616362 153616362 C T ARL6IP6 3'UTR 0.60 TCGA-DK-A1AC-01 2 15415689 15415689 C T NBAS Missense_Mutation p.M1881I 0.72 tolerated(0.25) benign(0) TCGA-DK-A1AC-01 2 16082186 16082186 G A MYCN 5'UTR 0.10 TCGA-DK-A1AC-01 2 169783663 169783663 C T ABCB11 Intron 0.35 TCGA-DK-A1AC-01 2 170148823 170148823 G A LRP2 Nonsense_Mutation p.Q237* 0.26 TCGA-DK-A1AC-01 2 171913057 171913057 G C TLK1 Nonsense_Mutation p.S158* 0.33 TCGA-DK-A1AC-01 2 172928454 172928454 G C METAP1D Missense_Mutation p.D72H 0.11 deleterious(0.04) probably_damaging(0.919) TCGA-DK-A1AC-01 2 179604684 179604684 C T TTN Missense_Mutation p.E4426K 0.30 TCGA-DK-A1AC-01 2 179606140 179606140 G C TTN Missense_Mutation p.F3940L 0.31 TCGA-DK-A1AC-01 2 179641337 179641337 G A TTN Missense_Mutation p.R1752C 0.37 TCGA-DK-A1AC-01 2 182766801 182766801 C T SSFA2 Nonsense_Mutation p.Q341* 0.25 TCGA-DK-A1AC-01 2 1893096 1893096 C T MYT1L Missense_Mutation p.E811K 0.20 tolerated(0.25) possibly_damaging(0.611) TCGA-DK-A1AC-01 2 190619038 190619038 C T OSGEPL1 Missense_Mutation p.E215K 0.22 tolerated(0.06) benign(0.145) TCGA-DK-A1AC-01 2 191792056 191792056 G A GLS Missense_Mutation p.E425K 0.35 deleterious(0.04) possibly_damaging(0.527) TCGA-DK-A1AC-01 2 197964488 197964488 G T ANKRD44 3'UTR 0.27 TCGA-DK-A1AC-01 2 198950660 198950660 G A PLCL1 Missense_Mutation p.E807K 0.32 deleterious(0.01) probably_damaging(0.948) TCGA-DK-A1AC-01 2 201342726 201342726 C G SPATS2L Nonsense_Mutation p.S550* 0.36 TCGA-DK-A1AC-01 2 202494121 202494121 C G TMEM237 Missense_Mutation p.G234A 0.60 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 2 204055050 204055050 G C NBEAL1 Missense_Mutation p.E2258Q 0.29 tolerated(0.2) probably_damaging(1) TCGA-DK-A1AC-01 2 208725884 208725884 C T PLEKHM3 Missense_Mutation p.E685K 0.67 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 2 209190606 209190606 G A PIKFYVE Missense_Mutation p.G1024E 0.77 tolerated(0.28) benign(0.325) TCGA-DK-A1AC-01 2 209190762 209190762 C G PIKFYVE Missense_Mutation p.S1076C 0.35 deleterious(0) benign(0.325) TCGA-DK-A1AC-01 2 21233209 21233209 A G APOB Silent p.Y2177Y 0.62 TCGA-DK-A1AC-01 2 21233218 21233218 C T APOB Silent p.L2174L 0.59 TCGA-DK-A1AC-01 2 214174842 214174842 C T SPAG16 Silent p.L113L 0.32 TCGA-DK-A1AC-01 2 215813432 215813432 G A ABCA12 Missense_Mutation p.S2331L 0.34 tolerated(0.08) possibly_damaging(0.79) TCGA-DK-A1AC-01 2 215852376 215852376 G A ABCA12 Missense_Mutation p.S1324F 0.39 tolerated(0.76) benign(0.006) TCGA-DK-A1AC-01 2 216200791 216200791 G A ATIC Missense_Mutation p.E348K 0.42 tolerated(0.1) benign(0.003) TCGA-DK-A1AC-01 2 219480435 219480435 C T PLCD4 5'UTR 0.36 TCGA-DK-A1AC-01 2 219602555 219602555 C T TTLL4 Silent p.I52I 0.21 TCGA-DK-A1AC-01 2 220085580 220085580 G A ATG9A Silent p.F801F 0.23 TCGA-DK-A1AC-01 2 220309694 220309694 C T SPEG Missense_Mutation p.P209L 0.21 benign(0.002) TCGA-DK-A1AC-01 2 220494009 220494009 G A SLC4A3 Missense_Mutation p.E121K 0.39 tolerated_low_confidence(0.15) possibly_damaging(0.749) TCGA-DK-A1AC-01 2 223096999 223096999 G A PAX3 Missense_Mutation p.S197L 0.14 deleterious(0.05) benign(0.002) TCGA-DK-A1AC-01 2 227662785 227662785 C T IRS1 Missense_Mutation p.E224K 0.40 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 2 232070924 232070924 G C ARMC9 5'UTR 0.26 TCGA-DK-A1AC-01 2 234669682 234669682 C G UGT1A8 Intron 0.31 TCGA-DK-A1AC-01 2 238730445 238730445 C T RBM44 Missense_Mutation p.S728L 0.28 tolerated(0.14) benign(0.032) TCGA-DK-A1AC-01 2 242135138 242135138 G T ANO7 Nonsense_Mutation p.E117* 0.55 TCGA-DK-A1AC-01 2 242162689 242162689 G A ANO7 Missense_Mutation p.E858K 0.72 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 2 242163167 242163167 C T ANO7 Silent p.L889L 0.34 TCGA-DK-A1AC-01 2 24236211 24236211 G A MFSD2B Silent p.G51G 0.19 TCGA-DK-A1AC-01 2 24398440 24398440 G C FAM228A Missense_Mutation p.E31Q 0.50 deleterious(0.05) possibly_damaging(0.857) TCGA-DK-A1AC-01 2 25047259 25047259 C T ADCY3 Silent p.K908K 0.58 TCGA-DK-A1AC-01 2 25705718 25705718 C T DTNB Missense_Mutation p.M342I 0.62 tolerated(0.43) benign(0.003) TCGA-DK-A1AC-01 2 26029124 26029124 C T ASXL2 Missense_Mutation p.G76S 0.12 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 2 26536242 26536242 C T GPR113 Intron 0.26 TCGA-DK-A1AC-01 2 26689579 26689579 C T OTOF Intron 0.14 TCGA-DK-A1AC-01 2 26726693 26726693 G A OTOF Missense_Mutation p.S177F 0.16 deleterious(0.01) possibly_damaging(0.534) TCGA-DK-A1AC-01 2 27258840 27258840 G A TMEM214 Missense_Mutation p.E214K 0.12 deleterious(0.01) benign(0.003) TCGA-DK-A1AC-01 2 27427346 27427346 G C SLC5A6 Missense_Mutation p.Q330E 0.15 tolerated(0.32) benign(0.005) TCGA-DK-A1AC-01 2 27430496 27430496 G T SLC5A6 Nonsense_Mutation p.S8* 0.15 TCGA-DK-A1AC-01 2 27463781 27463781 G A CAD Missense_Mutation p.E1866K 0.55 tolerated(0.48) benign(0.057) TCGA-DK-A1AC-01 2 27605009 27605009 G A PPM1G Missense_Mutation p.S473L 0.18 deleterious(0.01) probably_damaging(0.933) TCGA-DK-A1AC-01 2 28152708 28152708 A G BRE Silent p.S46S 0.18 TCGA-DK-A1AC-01 2 28634949 28634950 - CT FOSL2 Frame_Shift_Ins p.Q207Cfs*14 0.34 TCGA-DK-A1AC-01 2 29295005 29295005 G C C2orf71 Nonsense_Mutation p.S708* 0.12 TCGA-DK-A1AC-01 2 31587029 31587029 G A XDH Nonsense_Mutation p.Q876* 0.13 TCGA-DK-A1AC-01 2 32640622 32640622 G A BIRC6 Missense_Mutation p.E755K 0.15 benign(0.112) TCGA-DK-A1AC-01 2 32743450 32743450 C T BIRC6 Nonsense_Mutation p.Q3827* 0.15 TCGA-DK-A1AC-01 2 32770731 32770731 C T BIRC6 Missense_Mutation p.S4205L 0.16 benign(0.178) TCGA-DK-A1AC-01 2 38960689 38960689 C T GALM Silent p.F337F 0.45 TCGA-DK-A1AC-01 2 46815245 46815245 C G PIGF Intron 0.24 TCGA-DK-A1AC-01 2 54028617 54028617 G A ERLEC1 Silent p.Q203Q 0.33 TCGA-DK-A1AC-01 2 54882285 54882285 C T SPTBN1 Silent p.F1967F 0.16 TCGA-DK-A1AC-01 2 55252388 55252388 G C RTN4 Silent p.L949L 0.50 TCGA-DK-A1AC-01 2 55253818 55253818 C T RTN4 Missense_Mutation p.E473K 0.38 tolerated(0.08) benign(0.066) TCGA-DK-A1AC-01 2 55471226 55471226 C T MTIF2 Missense_Mutation p.G417E 0.53 tolerated(1) benign(0.071) TCGA-DK-A1AC-01 2 60688925 60688925 G C BCL11A Silent p.V374V 0.26 TCGA-DK-A1AC-01 2 61169372 61169372 T C PUS10 3'UTR 0.11 TCGA-DK-A1AC-01 2 62449761 62449761 G C B3GNT2 Missense_Mutation p.D136H 0.14 tolerated(0.19) benign(0.001) TCGA-DK-A1AC-01 2 63282997 63282997 C T OTX1 Missense_Mutation p.S204L 0.50 deleterious(0.01) unknown(0) TCGA-DK-A1AC-01 2 69569358 69569358 G C GFPT1 Missense_Mutation p.H377D 0.17 deleterious(0.01) benign(0.288) TCGA-DK-A1AC-01 2 70008679 70008679 C T ANXA4 5'UTR 0.29 TCGA-DK-A1AC-01 2 70315543 70315543 C T PCBP1 Missense_Mutation p.S223L 0.43 deleterious(0.02) benign(0.012) TCGA-DK-A1AC-01 2 71297643 71297643 G A NAGK Missense_Mutation p.R60Q 0.21 tolerated(0.16) benign(0.002) TCGA-DK-A1AC-01 2 73316586 73316586 G A RAB11FIP5 Intron 0.48 TCGA-DK-A1AC-01 2 74709391 74709391 C T CCDC142 Missense_Mutation p.E192K 0.40 deleterious_low_confidence(0.05) benign(0.08) TCGA-DK-A1AC-01 2 74883774 74883774 G C SEMA4F Missense_Mutation p.A87P 0.41 deleterious(0) probably_damaging(0.974) TCGA-DK-A1AC-01 2 85108116 85108116 G C TRABD2A Silent p.P16P 0.70 TCGA-DK-A1AC-01 2 85616934 85616934 G A ELMOD3 Missense_Mutation p.E267K 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-DK-A1AC-01 2 85662187 85662187 G A SH2D6 Missense_Mutation p.E37K 0.29 tolerated(0.19) benign(0) TCGA-DK-A1AC-01 2 86259451 86259451 C T POLR1A Missense_Mutation p.E1406K 0.41 tolerated(0.1) benign(0.061) TCGA-DK-A1AC-01 2 86333455 86333455 G A PTCD3 Missense_Mutation p.E29K 0.28 tolerated(0.78) benign(0.033) TCGA-DK-A1AC-01 2 88327938 88327938 C T KRCC1 Missense_Mutation p.E49K 0.36 tolerated(0.9) probably_damaging(0.999) TCGA-DK-A1AC-01 2 89416981 89416981 C G IGKV1-17 Missense_Mutation p.R68P 0.12 tolerated(0.05) benign(0) TCGA-DK-A1AC-01 2 89416982 89416982 G A IGKV1-17 Missense_Mutation p.R68C 0.13 deleterious(0.02) benign(0.005) TCGA-DK-A1AC-01 2 89545055 89545055 G A IGKV2-30 5'UTR 0.12 TCGA-DK-A1AC-01 2 9540887 9540887 G A ASAP2 Silent p.T917T 0.14 TCGA-DK-A1AC-01 2 9552439 9552439 C G ITGB1BP1 Missense_Mutation p.E83Q 0.16 tolerated(0.34) benign(0.026) TCGA-DK-A1AC-01 2 95940393 95940393 G A PROM2 Silent p.L20L 0.11 TCGA-DK-A1AC-01 2 95940456 95940456 C T PROM2 Silent p.F41F 0.22 TCGA-DK-A1AC-01 2 96072879 96072879 G T FAHD2A Nonsense_Mutation p.E146* 0.07 TCGA-DK-A1AC-01 2 96657376 96657376 G A ANKRD36C Silent p.P27P 0.14 TCGA-DK-A1AC-01 2 9695720 9695720 G A ADAM17 Silent p.L5L 0.21 TCGA-DK-A1AC-01 2 97215120 97215120 C T ARID5A Silent p.F61F 0.38 TCGA-DK-A1AC-01 2 99812183 99812183 C G MRPL30 3'UTR 0.41 TCGA-DK-A1AC-01 2 99976974 99976974 C G EIF5B Missense_Mutation p.Q70E 0.28 unknown(0) TCGA-DK-A1AC-01 2 99984993 99984993 G A EIF5B Silent p.K442K 0.35 TCGA-DK-A1AC-01 3 100471769 100471769 C G ABI3BP Missense_Mutation p.E951Q 0.46 tolerated(0.24) probably_damaging(0.932) TCGA-DK-A1AC-01 3 10067722 10067722 G A FANCD2 5'Flank 0.22 TCGA-DK-A1AC-01 3 10070355 10070355 G C FANCD2 Missense_Mutation p.R5T 0.06 deleterious(0) probably_damaging(0.984) TCGA-DK-A1AC-01 3 10127604 10127604 C T FANCD2 Silent p.L1111L 0.86 TCGA-DK-A1AC-01 3 108102561 108102561 G A MYH15 Nonsense_Mutation p.Q1903* 0.21 TCGA-DK-A1AC-01 3 108139937 108139937 C G MYH15 Missense_Mutation p.S1296T 0.20 tolerated(0.07) benign(0.257) TCGA-DK-A1AC-01 3 108218327 108218327 G A MYH15 Nonsense_Mutation p.R187* 0.43 TCGA-DK-A1AC-01 3 112255317 112255317 C G ATG3 Intron 0.52 TCGA-DK-A1AC-01 3 113377710 113377710 G A KIAA2018 Missense_Mutation p.S940L 0.50 benign(0.367) TCGA-DK-A1AC-01 3 113850098 113850098 C T DRD3 Silent p.A291A 0.11 TCGA-DK-A1AC-01 3 11606374 11606374 G T VGLL4 Missense_Mutation p.P131H 0.10 deleterious(0.03) probably_damaging(0.914) TCGA-DK-A1AC-01 3 120424963 120424963 T C RABL3 Splice_Site p.X90_splice 0.22 TCGA-DK-A1AC-01 3 121554153 121554153 C T EAF2 Silent p.F7F 0.45 TCGA-DK-A1AC-01 3 122658317 122658317 C T SEMA5B Silent p.R197R 0.16 TCGA-DK-A1AC-01 3 123699230 123699230 G A ROPN1 Silent p.L33L 0.32 TCGA-DK-A1AC-01 3 126676358 126676358 C T CHCHD6 Silent p.V222V 0.60 TCGA-DK-A1AC-01 3 128182099 128182099 G A DNAJB8 5'UTR 0.23 TCGA-DK-A1AC-01 3 129293326 129293326 G A PLXND1 Silent p.V846V 0.24 TCGA-DK-A1AC-01 3 12950806 12950806 C T IQSEC1 Missense_Mutation p.E863K 0.27 tolerated(0.05) possibly_damaging(0.751) TCGA-DK-A1AC-01 3 132071660 132071660 G A ACPP Missense_Mutation p.E321K 0.15 deleterious(0.02) benign(0.33) TCGA-DK-A1AC-01 3 132169512 132169512 C T DNAJC13 Missense_Mutation p.H120Y 0.58 deleterious(0.01) benign(0.236) TCGA-DK-A1AC-01 3 134077396 134077397 - T AMOTL2 Frame_Shift_Ins p.R757Kfs*98 0.17 TCGA-DK-A1AC-01 3 134077398 134077398 C T AMOTL2 Silent p.Q756Q 0.17 TCGA-DK-A1AC-01 3 138256169 138256169 C T CEP70 Silent p.K162K 0.20 TCGA-DK-A1AC-01 3 138665349 138665349 C T FOXL2 Silent p.E72E 0.42 TCGA-DK-A1AC-01 3 139258348 139258348 C T RBP1 Nonsense_Mutation p.W71* 0.33 TCGA-DK-A1AC-01 3 141006166 141006166 C T ACPL2 Missense_Mutation p.H126Y 0.23 tolerated(0.18) probably_damaging(0.969) TCGA-DK-A1AC-01 3 141526645 141526645 G A GRK7 Silent p.L403L 0.11 TCGA-DK-A1AC-01 3 141626055 141626055 C T ATP1B3 Silent p.F95F 0.25 TCGA-DK-A1AC-01 3 142509894 142509894 A G TRPC1 Missense_Mutation p.Y444C 0.21 deleterious(0.01) possibly_damaging(0.855) TCGA-DK-A1AC-01 3 146311816 146311816 G C PLSCR5 Missense_Mutation p.T115S 0.23 tolerated(0.39) benign(0.428) TCGA-DK-A1AC-01 3 14949214 14949214 G T FGD5 Missense_Mutation p.G1111V 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 3 149678727 149678727 G A RNF13 Missense_Mutation p.E328K 0.26 tolerated(0.75) benign(0.031) TCGA-DK-A1AC-01 3 151150606 151150606 G A MED12L 3'UTR 0.12 TCGA-DK-A1AC-01 3 152880887 152880887 T C RAP2B Silent p.A135A 0.39 TCGA-DK-A1AC-01 3 15297466 15297466 G T SH3BP5 3'UTR 0.37 TCGA-DK-A1AC-01 3 154886393 154886393 G A MME Nonsense_Mutation p.W631* 0.19 TCGA-DK-A1AC-01 3 155571662 155571662 G A SLC33A1 Missense_Mutation p.S42L 0.18 tolerated(0.3) benign(0) TCGA-DK-A1AC-01 3 160395402 160395402 G A ARL14 Missense_Mutation p.D90N 0.12 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 3 165548500 165548500 C G BCHE Missense_Mutation p.E108Q 0.61 deleterious(0) possibly_damaging(0.821) TCGA-DK-A1AC-01 3 167045793 167045793 T A ZBBX Missense_Mutation p.S267C 0.21 deleterious(0.01) possibly_damaging(0.525) TCGA-DK-A1AC-01 3 170725017 170725017 C T SLC2A2 Missense_Mutation p.E178K 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 3 170786662 170786662 G A TNIK Missense_Mutation p.S1225F 0.17 deleterious(0.03) probably_damaging(0.979) TCGA-DK-A1AC-01 3 171338225 171338225 G C PLD1 Missense_Mutation p.I893M 0.12 deleterious(0) possibly_damaging(0.9) TCGA-DK-A1AC-01 3 172061911 172061911 G A FNDC3B Missense_Mutation p.E705K 0.10 tolerated(0.69) benign(0.314) TCGA-DK-A1AC-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.41 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A1AC-01 3 179066706 179066706 G A MFN1 Missense_Mutation p.D23N 0.19 tolerated(0.42) benign(0.005) TCGA-DK-A1AC-01 3 179305844 179305844 C T ACTL6A 3'UTR 0.55 TCGA-DK-A1AC-01 3 179754502 179754502 C T PEX5L 5'UTR 0.56 TCGA-DK-A1AC-01 3 180319941 180319941 G C TTC14 5'UTR 0.29 TCGA-DK-A1AC-01 3 182872117 182872117 G A LAMP3 Nonsense_Mutation p.Q38* 0.44 TCGA-DK-A1AC-01 3 183960265 183960265 G A ALG3 3'UTR 0.24 TCGA-DK-A1AC-01 3 183967552 183967552 G A ECE2 Missense_Mutation p.E24K 0.34 deleterious_low_confidence(0.03) benign(0) TCGA-DK-A1AC-01 3 185643391 185643391 C T TRA2B Missense_Mutation p.R65Q 0.24 tolerated_low_confidence(0.12) unknown(0) TCGA-DK-A1AC-01 3 186358310 186358310 C T FETUB Missense_Mutation p.P21S 0.50 tolerated(0.08) benign(0.17) TCGA-DK-A1AC-01 3 186969425 186969425 C T MASP1 Silent p.L336L 0.54 TCGA-DK-A1AC-01 3 189349350 189349350 G A TP63 Missense_Mutation p.D16N 0.23 tolerated_low_confidence(0.57) benign(0.003) TCGA-DK-A1AC-01 3 193854434 193854434 G A HES1 Missense_Mutation p.R46Q 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 3 193855629 193855629 C T HES1 Silent p.I150I 0.20 TCGA-DK-A1AC-01 3 195701408 195701408 C T SDHAP1 RNA 0.17 TCGA-DK-A1AC-01 3 196214289 196214289 C G RNF168 Missense_Mutation p.R180T 0.24 tolerated(0.16) benign(0.403) TCGA-DK-A1AC-01 3 197238892 197238892 G A BDH1 Silent p.V302V 0.25 TCGA-DK-A1AC-01 3 2908608 2908608 T C CNTN4 Silent p.P209P 0.30 TCGA-DK-A1AC-01 3 30045548 30045548 C T RBMS3 3'UTR 1.00 TCGA-DK-A1AC-01 3 36570456 36570456 G C STAC Missense_Mutation p.Q363H 0.50 tolerated(0.2) probably_damaging(0.999) TCGA-DK-A1AC-01 3 37033664 37033664 G A EPM2AIP1 Missense_Mutation p.S302F 0.19 tolerated(0.09) probably_damaging(0.935) TCGA-DK-A1AC-01 3 37034658 37034658 C T EPM2AIP1 5'UTR 0.70 TCGA-DK-A1AC-01 3 38415956 38415956 C T XYLB Missense_Mutation p.S284L 0.61 deleterious(0.01) probably_damaging(0.958) TCGA-DK-A1AC-01 3 39307491 39307491 C G CX3CR1 Missense_Mutation p.Q202H 0.31 tolerated(0.13) benign(0.009) TCGA-DK-A1AC-01 3 40456182 40456182 G A ENTPD3 Missense_Mutation p.E150K 0.51 tolerated(0.15) benign(0.443) TCGA-DK-A1AC-01 3 40558468 40558468 C T ZNF620 3'UTR 0.29 TCGA-DK-A1AC-01 3 41266101 41266101 C T CTNNB1 Missense_Mutation p.S33F 0.18 deleterious(0) probably_damaging(0.949) TCGA-DK-A1AC-01 3 44684773 44684773 G T ZNF197 Missense_Mutation p.M717I 0.42 tolerated(0.38) benign(0.096) TCGA-DK-A1AC-01 3 44700379 44700379 G T ZNF35 Missense_Mutation p.R175I 0.74 tolerated(0.08) benign(0.259) TCGA-DK-A1AC-01 3 45077285 45077285 G A CLEC3B Missense_Mutation p.E160K 0.73 deleterious(0.02) probably_damaging(0.947) TCGA-DK-A1AC-01 3 47378043 47378043 T C KLHL18 Missense_Mutation p.V306A 0.67 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 3 47676775 47676775 C T SMARCC1 Missense_Mutation p.D851N 0.66 tolerated(0.08) benign(0.015) TCGA-DK-A1AC-01 3 48309504 48309504 C T ZNF589 Missense_Mutation p.P108L 0.21 tolerated(0.19) possibly_damaging(0.908) TCGA-DK-A1AC-01 3 48447188 48447188 G A PLXNB1 Silent p.L2082L 0.27 TCGA-DK-A1AC-01 3 48474369 48474369 C T CCDC51 Missense_Mutation p.E229K 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 3 48506933 48506933 C G ATRIP Missense_Mutation p.P786A 0.32 tolerated(0.75) benign(0.081) TCGA-DK-A1AC-01 3 48602351 48602351 G A COL7A1 Missense_Mutation p.R2895W 0.16 probably_damaging(0.968) TCGA-DK-A1AC-01 3 48626328 48626328 G C COL7A1 Nonsense_Mutation p.Y805* 0.17 TCGA-DK-A1AC-01 3 48664437 48664437 C G SLC26A6 Missense_Mutation p.D649H 0.16 tolerated(0.08) benign(0.024) TCGA-DK-A1AC-01 3 48671065 48671065 C T SLC26A6 Silent p.P9P 0.47 TCGA-DK-A1AC-01 3 49044905 49044905 C T WDR6 Missense_Mutation p.S44L 0.36 deleterious(0) possibly_damaging(0.673) TCGA-DK-A1AC-01 3 49050477 49050477 G A WDR6 Missense_Mutation p.D534N 0.23 tolerated(0.51) benign(0.036) TCGA-DK-A1AC-01 3 49060614 49060614 G A NDUFAF3 3'UTR 0.45 TCGA-DK-A1AC-01 3 49062461 49062461 G C IMPDH2 Missense_Mutation p.S388C 0.16 deleterious(0) probably_damaging(0.995) TCGA-DK-A1AC-01 3 49137494 49137494 C T QARS Missense_Mutation p.E399K 0.20 tolerated(0.51) probably_damaging(0.999) TCGA-DK-A1AC-01 3 49314209 49314209 C T C3orf62 Missense_Mutation p.E33K 0.58 deleterious(0) possibly_damaging(0.725) TCGA-DK-A1AC-01 3 49449798 49449798 G A TCTA 5'UTR 0.38 TCGA-DK-A1AC-01 3 49449866 49449866 G T TCTA Nonsense_Mutation p.E3* 0.47 TCGA-DK-A1AC-01 3 49455127 49455127 G A AMT Missense_Mutation p.S353F 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 3 49718651 49718651 G C APEH Missense_Mutation p.E473Q 0.48 tolerated(0.12) benign(0.008) TCGA-DK-A1AC-01 3 49724697 49724697 A T MST1 Missense_Mutation p.N164K 0.39 tolerated(0.43) possibly_damaging(0.771) TCGA-DK-A1AC-01 3 5022016 5022016 G A BHLHE40 Missense_Mutation p.E61K 0.85 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 3 50396052 50396052 G A TMEM115 Missense_Mutation p.A148V 0.50 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 3 51426367 51426367 G A MANF Silent p.L132L 0.50 TCGA-DK-A1AC-01 3 51672281 51672281 G A RAD54L2 Missense_Mutation p.G602S 0.41 tolerated(0.08) possibly_damaging(0.771) TCGA-DK-A1AC-01 3 5252943 5252943 C G EDEM1 Intron 0.10 TCGA-DK-A1AC-01 3 52584525 52584526 CC - PBRM1 Frame_Shift_Del p.R1496Pfs*12 0.14 TCGA-DK-A1AC-01 3 53212478 53212478 C A PRKCD Missense_Mutation p.L14M 0.18 tolerated_low_confidence(0.31) benign(0.035) TCGA-DK-A1AC-01 3 56114883 56114883 C G ERC2 Missense_Mutation p.E535Q 0.48 deleterious(0.02) possibly_damaging(0.854) TCGA-DK-A1AC-01 3 56627024 56627024 C T CCDC66 Silent p.F321F 0.24 TCGA-DK-A1AC-01 3 58106996 58106996 C T FLNB Silent p.F964F 0.24 TCGA-DK-A1AC-01 3 58109098 58109098 A T FLNB Missense_Mutation p.K1135N 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 3 58377553 58377553 C T PXK Silent p.I198I 0.48 TCGA-DK-A1AC-01 3 63600994 63600994 C T SYNPR Missense_Mutation p.S232L 0.19 tolerated(0.15) benign(0.076) TCGA-DK-A1AC-01 3 64142939 64142939 C T PRICKLE2 Missense_Mutation p.E167K 0.58 deleterious(0) probably_damaging(0.994) TCGA-DK-A1AC-01 3 67054357 67054357 T C KBTBD8 Silent p.N322N 0.48 TCGA-DK-A1AC-01 3 69074854 69074854 G A TMF1 Missense_Mutation p.H957Y 0.30 tolerated(1) benign(0.002) TCGA-DK-A1AC-01 3 69112141 69112141 G T UBA3 Missense_Mutation p.P229T 0.53 tolerated(0.21) probably_damaging(0.911) TCGA-DK-A1AC-01 3 71037150 71037150 G A FOXP1 Nonsense_Mutation p.Q383* 0.25 TCGA-DK-A1AC-01 3 9055453 9055453 C G SRGAP3 Silent p.V629V 0.06 TCGA-DK-A1AC-01 3 93593036 93593036 C T PROS1 3'UTR 0.15 TCGA-DK-A1AC-01 3 93611869 93611869 G A PROS1 Missense_Mutation p.R355C 0.06 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 3 93733304 93733304 T C STX19 Silent p.L270L 0.55 TCGA-DK-A1AC-01 3 93781924 93781924 G A NSUN3 5'UTR 0.12 TCGA-DK-A1AC-01 3 97668720 97668720 G A MINA Missense_Mutation p.S343F 0.18 tolerated(0.69) benign(0.005) TCGA-DK-A1AC-01 3 9791867 9791867 G C OGG1 5'UTR 0.88 TCGA-DK-A1AC-01 3 9803376 9803376 G A CAMK1 Silent p.L165L 0.31 TCGA-DK-A1AC-01 3 9959040 9959040 G A IL17RC Missense_Mutation p.R14Q 0.15 deleterious_low_confidence(0.01) benign(0.238) TCGA-DK-A1AC-01 3 9986069 9986069 G A CRELD1 Silent p.Q421Q 0.11 TCGA-DK-A1AC-01 4 100756843 100756843 C T DAPP1 Silent p.D55D 0.40 TCGA-DK-A1AC-01 4 103723730 103723730 G C UBE2D3 Missense_Mutation p.F64L 0.40 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-DK-A1AC-01 4 107154786 107154786 C T TBCK Missense_Mutation p.D491N 0.46 tolerated(0.09) benign(0.054) TCGA-DK-A1AC-01 4 107956627 107956627 G A DKK2 Missense_Mutation p.S41F 0.70 deleterious(0.05) benign(0.022) TCGA-DK-A1AC-01 4 109663505 109663505 C T ETNPPL 3'UTR 0.73 TCGA-DK-A1AC-01 4 110384687 110384687 C T SEC24B Missense_Mutation p.S255L 0.86 tolerated_low_confidence(0.52) benign(0.003) TCGA-DK-A1AC-01 4 110460768 110460768 G C SEC24B Silent p.R1248R 0.63 TCGA-DK-A1AC-01 4 110682771 110682771 C T CFI Missense_Mutation p.R187Q 0.82 tolerated(0.16) benign(0.053) TCGA-DK-A1AC-01 4 114232546 114232546 G A ANK2 Missense_Mutation p.R895Q 0.18 benign(0.105) TCGA-DK-A1AC-01 4 120549792 120549792 C T PDE5A Missense_Mutation p.R12Q 0.74 tolerated_low_confidence(0.26) unknown(0) TCGA-DK-A1AC-01 4 126398547 126398547 C T FAT4 Intron 0.67 TCGA-DK-A1AC-01 4 1388306 1388306 G A CRIPAK Missense_Mutation p.E3K 0.57 deleterious_low_confidence(0) benign(0.008) TCGA-DK-A1AC-01 4 140005446 140005446 G T ELF2 Intron 0.21 TCGA-DK-A1AC-01 4 140291390 140291390 G C NAA15 Missense_Mutation p.K593N 0.87 deleterious(0.01) benign(0.118) TCGA-DK-A1AC-01 4 142155060 142155060 G A ZNF330 Missense_Mutation p.E294K 0.32 deleterious_low_confidence(0) benign(0.209) TCGA-DK-A1AC-01 4 144109040 144109040 G C USP38 Missense_Mutation p.M248I 0.29 deleterious(0.01) benign(0.206) TCGA-DK-A1AC-01 4 145567932 145567932 G T HHIP Missense_Mutation p.R35S 0.24 deleterious_low_confidence(0.03) benign(0.255) TCGA-DK-A1AC-01 4 146067481 146067481 C T OTUD4 Missense_Mutation p.E389K 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1AC-01 4 153247165 153247165 G A FBXW7 Missense_Mutation p.S546L 0.76 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 4 154525365 154525365 C T KIAA0922 Silent p.F1067F 0.31 TCGA-DK-A1AC-01 4 154542885 154542885 C G KIAA0922 Missense_Mutation p.S1248C 0.33 tolerated(0.08) benign(0.029) TCGA-DK-A1AC-01 4 164087539 164087539 G A NAF1 Missense_Mutation p.S114L 0.50 tolerated_low_confidence(0.19) probably_damaging(0.953) TCGA-DK-A1AC-01 4 169351708 169351708 G A DDX60L Missense_Mutation p.S533L 0.25 tolerated(0.13) benign(0.013) TCGA-DK-A1AC-01 4 1746259 1746259 G A TACC3 Silent p.L746L 0.13 TCGA-DK-A1AC-01 4 22456499 22456499 G A GPR125 Silent p.L155L 0.13 TCGA-DK-A1AC-01 4 25005688 25005688 G C LGI2 Silent p.V341V 0.55 TCGA-DK-A1AC-01 4 25005740 25005740 G A LGI2 Missense_Mutation p.S324F 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1AC-01 4 25664407 25664407 G A SLC34A2 Missense_Mutation p.E65K 0.61 tolerated(0.09) benign(0.006) TCGA-DK-A1AC-01 4 26750122 26750122 G A TBC1D19 Missense_Mutation p.G470E 0.32 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AC-01 4 2746669 2746669 C T TNIP2 Missense_Mutation p.E221K 0.17 deleterious(0) probably_damaging(0.966) TCGA-DK-A1AC-01 4 3344756 3344756 C T RGS12 Silent p.I658I 0.19 TCGA-DK-A1AC-01 4 3424704 3424704 C T RGS12 Missense_Mutation p.R1036W 0.16 deleterious(0) probably_damaging(0.943) TCGA-DK-A1AC-01 4 39271675 39271675 G C WDR19 Missense_Mutation p.E1146D 0.23 tolerated(0.13) benign(0.101) TCGA-DK-A1AC-01 4 39278656 39278656 G A WDR19 Missense_Mutation p.E1245K 0.26 deleterious(0.01) benign(0.26) TCGA-DK-A1AC-01 4 3944359 3944359 G A FAM86EP RNA 0.27 TCGA-DK-A1AC-01 4 39448203 39448203 C T KLB Silent p.A619A 0.20 TCGA-DK-A1AC-01 4 39978093 39978093 C T PDS5A Silent p.K35K 0.42 TCGA-DK-A1AC-01 4 40103906 40103906 G A N4BP2 Silent p.Q147Q 0.23 TCGA-DK-A1AC-01 4 40123254 40123254 C T N4BP2 Missense_Mutation p.P1175S 0.30 tolerated(1) benign(0) TCGA-DK-A1AC-01 4 40144375 40144375 G A N4BP2 Missense_Mutation p.R1623K 0.23 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 4 40245409 40245409 G A RHOH Missense_Mutation p.E135K 0.27 tolerated(0.05) benign(0.062) TCGA-DK-A1AC-01 4 40350954 40350954 G A CHRNA9 Missense_Mutation p.G141R 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 4 4303908 4303908 A T ZBTB49 Silent p.T115T 0.24 TCGA-DK-A1AC-01 4 46053535 46053535 G A GABRG1 Missense_Mutation p.A346V 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-DK-A1AC-01 4 47565643 47565643 C T ATP10D Missense_Mutation p.S905F 0.21 deleterious(0) possibly_damaging(0.797) TCGA-DK-A1AC-01 4 47578955 47578955 C G ATP10D Missense_Mutation p.L1178V 0.19 tolerated(0.16) possibly_damaging(0.495) TCGA-DK-A1AC-01 4 48139430 48139430 C T TEC 3'UTR 0.33 TCGA-DK-A1AC-01 4 48422195 48422195 C T SLAIN2 Missense_Mutation p.R472W 0.20 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 4 48525073 48525073 C T FRYL Missense_Mutation p.D2456N 0.42 deleterious(0.02) possibly_damaging(0.69) TCGA-DK-A1AC-01 4 48605373 48605373 C T FRYL Silent p.L289L 0.39 TCGA-DK-A1AC-01 4 48862870 48862870 C G OCIAD1 3'UTR 0.22 TCGA-DK-A1AC-01 4 55524236 55524236 C T KIT Missense_Mutation p.R19C 0.38 tolerated(0.19) possibly_damaging(0.614) TCGA-DK-A1AC-01 4 5567045 5567045 C G EVC2 Missense_Mutation p.R1200P 0.07 deleterious(0) probably_damaging(0.956) TCGA-DK-A1AC-01 4 5578040 5578040 C T EVC2 Missense_Mutation p.E1067K 0.23 tolerated(0.06) benign(0.05) TCGA-DK-A1AC-01 4 55991471 55991471 G C KDR 5'UTR 0.45 TCGA-DK-A1AC-01 4 5838496 5838496 G A CRMP1 Missense_Mutation p.A483V 0.31 deleterious(0.01) possibly_damaging(0.861) TCGA-DK-A1AC-01 4 62813849 62813849 C T LPHN3 Missense_Mutation p.S819L 0.21 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AC-01 4 676629 676629 C T MFSD7 Missense_Mutation p.R401Q 0.40 tolerated(0.3) benign(0.003) TCGA-DK-A1AC-01 4 678583 678583 C A MFSD7 Missense_Mutation p.E216D 0.64 tolerated(0.1) benign(0.003) TCGA-DK-A1AC-01 4 68784859 68784859 C T TMPRSS11A Missense_Mutation p.E265K 0.44 deleterious(0) possibly_damaging(0.577) TCGA-DK-A1AC-01 4 69434194 69434194 C T UGT2B17 Silent p.L3L 0.38 TCGA-DK-A1AC-01 4 7044015 7044015 C T CCDC96 Silent p.Q217Q 0.56 TCGA-DK-A1AC-01 4 7044026 7044026 C T CCDC96 Missense_Mutation p.E214K 0.54 deleterious_low_confidence(0.03) probably_damaging(0.922) TCGA-DK-A1AC-01 4 71339733 71339733 G A MUC7 5'UTR 0.18 TCGA-DK-A1AC-01 4 74019738 74019768 CATTATGGTCCTCAATACTAGCACCGGATTC - ANKRD17 Frame_Shift_Del p.E355Kfs*18 0.14 TCGA-DK-A1AC-01 4 74350018 74350018 G A AFM Missense_Mutation p.E61K 0.26 tolerated(0.16) probably_damaging(0.92) TCGA-DK-A1AC-01 4 759890 759890 G C PCGF3 3'UTR 0.52 TCGA-DK-A1AC-01 4 76434446 76434446 G A RCHY1 Nonsense_Mutation p.Q51* 0.66 TCGA-DK-A1AC-01 4 76781894 76781894 C T PPEF2 Missense_Mutation p.E730K 0.32 tolerated_low_confidence(0.1) benign(0.007) TCGA-DK-A1AC-01 4 76782018 76782018 C T PPEF2 Missense_Mutation p.M688I 0.22 tolerated(0.08) probably_damaging(0.985) TCGA-DK-A1AC-01 4 76895235 76895235 G A SDAD1 Silent p.V210V 0.27 TCGA-DK-A1AC-01 4 77100813 77100813 C T SCARB2 Missense_Mutation p.E157K 0.55 tolerated(0.36) benign(0.009) TCGA-DK-A1AC-01 4 77660886 77660886 G A SHROOM3 Silent p.Q520Q 0.55 TCGA-DK-A1AC-01 4 81123465 81123465 C T PRDM8 Silent p.L283L 0.33 TCGA-DK-A1AC-01 4 8237168 8237168 G A SH3TC1 Silent p.Q1097Q 0.48 TCGA-DK-A1AC-01 4 83406710 83406710 G A TMEM150C Missense_Mutation p.S235L 0.41 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-DK-A1AC-01 4 83978470 83978477 CAATGAGC - COPS4 Frame_Shift_Del p.N209Lfs*10 0.44 TCGA-DK-A1AC-01 4 85672802 85672802 C G WDFY3 Missense_Mutation p.G1936A 0.16 tolerated(1) benign(0.003) TCGA-DK-A1AC-01 4 87653921 87653921 T C PTPN13 Splice_Site p.X620_splice 0.42 TCGA-DK-A1AC-01 4 887189 887189 C T GAK Silent p.V322V 0.38 TCGA-DK-A1AC-01 4 96051059 96051059 G A BMPR1B Missense_Mutation p.G241E 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 4 96199421 96199421 G A UNC5C Missense_Mutation p.P195S 0.21 deleterious(0.02) possibly_damaging(0.612) TCGA-DK-A1AC-01 5 1081816 1081816 C T SLC12A7 Silent p.E391E 0.21 TCGA-DK-A1AC-01 5 1081819 1081819 C T SLC12A7 Silent p.V390V 0.19 TCGA-DK-A1AC-01 5 109202634 109202634 C T MAN2A1 Nonsense_Mutation p.Q1124* 0.29 TCGA-DK-A1AC-01 5 112111406 112111406 G C APC Missense_Mutation p.R168T 0.33 probably_damaging(0.985) TCGA-DK-A1AC-01 5 112418687 112418687 C T MCC Missense_Mutation p.E552K 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A1AC-01 5 112458513 112458513 C T MCC Missense_Mutation p.E299K 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A1AC-01 5 114878661 114878661 C G FEM1C Missense_Mutation p.R177T 0.24 deleterious(0.03) probably_damaging(0.911) TCGA-DK-A1AC-01 5 114879143 114879143 G A FEM1C Silent p.L16L 0.49 TCGA-DK-A1AC-01 5 118533494 118533494 C T DMXL1 Missense_Mutation p.L2530F 0.22 deleterious(0.02) benign(0.12) TCGA-DK-A1AC-01 5 118533569 118533569 C T DMXL1 Missense_Mutation p.H2555Y 0.20 tolerated(1) benign(0.008) TCGA-DK-A1AC-01 5 121758693 121758693 G A SNCAIP Silent p.E87E 0.31 TCGA-DK-A1AC-01 5 1239598 1239598 G A SLC6A18 Missense_Mutation p.D256N 0.48 tolerated(0.23) probably_damaging(0.998) TCGA-DK-A1AC-01 5 124036770 124036770 C G ZNF608 Missense_Mutation p.G367R 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 5 124036909 124036909 G A ZNF608 Silent p.L320L 0.23 TCGA-DK-A1AC-01 5 124080028 124080028 G A ZNF608 Nonsense_Mutation p.Q219* 0.55 TCGA-DK-A1AC-01 5 125759297 125759297 C T GRAMD3 Intron 0.24 TCGA-DK-A1AC-01 5 127647056 127647056 A - FBN2 Frame_Shift_Del p.F1670Lfs*66 0.17 TCGA-DK-A1AC-01 5 130970657 130970657 C A RAPGEF6 Nonsense_Mutation p.E23* 0.18 TCGA-DK-A1AC-01 5 131039796 131039796 C G FNIP1 Missense_Mutation p.E360Q 0.19 deleterious(0) possibly_damaging(0.782) TCGA-DK-A1AC-01 5 132209663 132209663 G C LEAP2 Missense_Mutation p.E27Q 0.61 tolerated(0.47) benign(0.024) TCGA-DK-A1AC-01 5 132534795 132534795 C T FSTL4 Missense_Mutation p.E841K 0.21 deleterious(0) probably_damaging(0.91) TCGA-DK-A1AC-01 5 132535121 132535121 G A FSTL4 Missense_Mutation p.S732L 0.31 tolerated(1) benign(0.001) TCGA-DK-A1AC-01 5 133295697 133295697 C T C5orf15 Missense_Mutation p.D52N 0.37 tolerated(0.3) benign(0.004) TCGA-DK-A1AC-01 5 133984735 133984735 G A SEC24A 5'UTR 0.56 TCGA-DK-A1AC-01 5 134235176 134235176 C T TXNDC15 Intron 0.28 TCGA-DK-A1AC-01 5 134696333 134696333 C T H2AFY Intron 0.25 TCGA-DK-A1AC-01 5 134785084 134785084 G A TIFAB 3'UTR 0.20 TCGA-DK-A1AC-01 5 134785161 134785161 G C TIFAB Missense_Mutation p.P157A 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-DK-A1AC-01 5 138661216 138661216 G T MATR3 Nonsense_Mutation p.E746* 0.24 TCGA-DK-A1AC-01 5 138665072 138665072 G C MATR3 Missense_Mutation p.K844N 0.15 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-DK-A1AC-01 5 139905595 139905595 C T ANKHD1 Missense_Mutation p.P1503S 0.24 possibly_damaging(0.641) TCGA-DK-A1AC-01 5 140230192 140230192 C G PCDHA9 Missense_Mutation p.I704M 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A1AC-01 5 140308755 140308755 C T PCDHAC1 Silent p.L760L 0.44 TCGA-DK-A1AC-01 5 140431478 140431478 G A PCDHB1 Silent p.K141K 0.14 TCGA-DK-A1AC-01 5 140476935 140476935 T C PCDHB2 3'UTR 0.17 TCGA-DK-A1AC-01 5 140502976 140502976 G A PCDHB4 Missense_Mutation p.A466T 0.31 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-DK-A1AC-01 5 140579748 140579748 C T PCDHB11 Missense_Mutation p.S134L 0.22 tolerated_low_confidence(1) benign(0) TCGA-DK-A1AC-01 5 140744168 140744168 G A PCDHGA5 Missense_Mutation p.D91N 0.36 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-DK-A1AC-01 5 140788029 140788029 A C PCDHGB6 Missense_Mutation p.K87T 0.25 deleterious(0.04) benign(0.216) TCGA-DK-A1AC-01 5 1420746 1420746 C T SLC6A3 Missense_Mutation p.G289R 0.18 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AC-01 5 143549462 143549462 C T YIPF5 Missense_Mutation p.D20N 0.60 tolerated(0.83) benign(0.318) TCGA-DK-A1AC-01 5 145252343 145252343 A G GRXCR2 Silent p.G63G 0.36 TCGA-DK-A1AC-01 5 146763487 146763487 C A STK32A Missense_Mutation p.L378I 0.38 tolerated(0.2) benign(0.001) TCGA-DK-A1AC-01 5 148730750 148730750 G A GRPEL2 Missense_Mutation p.V195M 0.47 deleterious(0.03) benign(0.259) TCGA-DK-A1AC-01 5 150847396 150847396 C A SLC36A1 Silent p.I211I 0.24 TCGA-DK-A1AC-01 5 150867878 150867878 C G SLC36A1 3'UTR 0.33 TCGA-DK-A1AC-01 5 151784712 151784712 C G NMUR2 5'UTR 0.25 TCGA-DK-A1AC-01 5 159682612 159682612 C T CCNJL Silent p.Q277Q 0.48 TCGA-DK-A1AC-01 5 16475032 16475032 G C FAM134B Missense_Mutation p.Q438E 0.25 tolerated(0.82) benign(0.101) TCGA-DK-A1AC-01 5 16680071 16680071 C T MYO10 Silent p.L1509L 0.18 TCGA-DK-A1AC-01 5 16701650 16701650 C T MYO10 Missense_Mutation p.E952K 0.23 deleterious_low_confidence(0.01) benign(0.084) TCGA-DK-A1AC-01 5 167655045 167655045 G A TENM2 Silent p.L1810L 0.73 TCGA-DK-A1AC-01 5 169122855 169122855 C T DOCK2 Nonsense_Mutation p.Q298* 0.53 TCGA-DK-A1AC-01 5 170159845 170159845 G A KCNIP1 Silent p.G170G 0.30 TCGA-DK-A1AC-01 5 170215616 170215616 C G GABRP 5'UTR 0.23 TCGA-DK-A1AC-01 5 171517361 171517361 C T STK10 Silent p.P520P 0.26 TCGA-DK-A1AC-01 5 175306917 175306917 G C CPLX2 Missense_Mutation p.G92R 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 5 175307108 175307108 C G CPLX2 3'UTR 0.45 TCGA-DK-A1AC-01 5 175816403 175816403 C T HIGD2A Nonsense_Mutation p.Q76* 0.39 TCGA-DK-A1AC-01 5 176309065 176309065 G C HK3 Nonsense_Mutation p.S706* 0.37 TCGA-DK-A1AC-01 5 176562564 176562564 G C NSD1 Missense_Mutation p.E154Q 0.16 deleterious_low_confidence(0.04) benign(0.287) TCGA-DK-A1AC-01 5 176721473 176721473 C G NSD1 Silent p.A2368A 0.15 TCGA-DK-A1AC-01 5 176867977 176867977 C T GRK6 Missense_Mutation p.P534S 0.23 tolerated(0.51) possibly_damaging(0.704) TCGA-DK-A1AC-01 5 178359071 178359071 C T ZFP2 Nonsense_Mutation p.Q253* 0.20 TCGA-DK-A1AC-01 5 178554964 178554964 G A ADAMTS2 Silent p.G871G 0.25 TCGA-DK-A1AC-01 5 179251010 179251010 A T SQSTM1 Missense_Mutation p.S152C 0.27 deleterious(0.01) possibly_damaging(0.759) TCGA-DK-A1AC-01 5 179763570 179763570 C T GFPT2 Silent p.A41A 0.56 TCGA-DK-A1AC-01 5 180472482 180472482 G A BTNL9 5'UTR 0.09 TCGA-DK-A1AC-01 5 180582627 180582627 A G OR2V2 Missense_Mutation p.M229V 0.17 deleterious(0.01) benign(0.011) TCGA-DK-A1AC-01 5 23522739 23522739 G C PRDM9 Missense_Mutation p.Q209H 0.26 deleterious(0) possibly_damaging(0.53) TCGA-DK-A1AC-01 5 256590 256590 C T SDHA 3'UTR 0.19 TCGA-DK-A1AC-01 5 31302360 31302360 C T CDH6 Silent p.V318V 0.18 TCGA-DK-A1AC-01 5 33641932 33641932 C T ADAMTS12 Silent p.R567R 0.26 TCGA-DK-A1AC-01 5 35921175 35921175 C G CAPSL Missense_Mutation p.K16N 0.27 tolerated(0.1) benign(0.035) TCGA-DK-A1AC-01 5 36152307 36152307 G A SKP2 5'UTR 0.24 TCGA-DK-A1AC-01 5 38464063 38464063 A C EGFLAM Missense_Mutation p.N1010T 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-DK-A1AC-01 5 38904542 38904542 G C OSMR Missense_Mutation p.D408H 0.21 tolerated(0.25) benign(0.136) TCGA-DK-A1AC-01 5 38945050 38945050 G A RICTOR Missense_Mutation p.S1585L 0.24 deleterious(0.02) benign(0.033) TCGA-DK-A1AC-01 5 40692603 40692603 G A PTGER4 3'UTR 0.20 TCGA-DK-A1AC-01 5 40716164 40716164 C T TTC33 3'UTR 0.44 TCGA-DK-A1AC-01 5 40853853 40853853 C T CARD6 Missense_Mutation p.R807W 0.22 tolerated(0.17) benign(0.002) TCGA-DK-A1AC-01 5 40998246 40998246 G A MROH2B Missense_Mutation p.R1556C 0.26 deleterious(0.02) benign(0.005) TCGA-DK-A1AC-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.26 tolerated(0.25) benign(0.064) TCGA-DK-A1AC-01 5 41009499 41009499 C T MROH2B Silent p.K1101K 0.22 TCGA-DK-A1AC-01 5 475147 475147 C T SLC9A3 Silent p.S784S 0.37 TCGA-DK-A1AC-01 5 52096666 52096666 C T PELO Silent p.L146L 0.19 TCGA-DK-A1AC-01 5 53815651 53815651 G A SNX18 Missense_Mutation p.M623I 0.25 deleterious_low_confidence(0) benign(0.019) TCGA-DK-A1AC-01 5 54573026 54573026 G T DHX29 Missense_Mutation p.L732I 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1AC-01 5 5457591 5457591 C T KIAA0947 Nonsense_Mutation p.Q280* 0.26 TCGA-DK-A1AC-01 5 64267618 64267618 G A CWC27 Silent p.K377K 0.20 TCGA-DK-A1AC-01 5 6604332 6604332 C T NSUN2 Missense_Mutation p.D626N 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 5 67593263 67593263 G A PIK3R1 Missense_Mutation p.C670Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 5 71015114 71015114 C T CARTPT 5'UTR 0.17 TCGA-DK-A1AC-01 5 73932241 73932241 G A ENC1 Missense_Mutation p.H24Y 0.31 deleterious(0.02) benign(0.021) TCGA-DK-A1AC-01 5 74101053 74101053 C T FAM169A Missense_Mutation p.E243K 0.24 deleterious(0) possibly_damaging(0.607) TCGA-DK-A1AC-01 5 7870910 7870910 G A MTRR Missense_Mutation p.M28I 0.50 tolerated(0.08) benign(0.445) TCGA-DK-A1AC-01 5 7900211 7900211 G A MTRR 3'UTR 0.29 TCGA-DK-A1AC-01 5 82815228 82815228 C G VCAN Missense_Mutation p.S368C 0.32 deleterious(0.01) probably_damaging(0.927) TCGA-DK-A1AC-01 5 86700760 86700760 C T CCNH Missense_Mutation p.R197K 0.29 tolerated(0.48) benign(0.001) TCGA-DK-A1AC-01 5 86703827 86703827 T G CCNH Missense_Mutation p.Y164S 0.35 deleterious(0) possibly_damaging(0.554) TCGA-DK-A1AC-01 5 9202334 9202334 G A SEMA5A Missense_Mutation p.S222F 0.34 deleterious(0) probably_damaging(0.945) TCGA-DK-A1AC-01 5 92956830 92956830 C T FAM172A Missense_Mutation p.D372N 0.30 deleterious(0.03) benign(0.021) TCGA-DK-A1AC-01 6 106649864 106649864 G A ATG5 Missense_Mutation p.S225F 0.47 tolerated(0.07) benign(0.258) TCGA-DK-A1AC-01 6 107232003 107232003 C G MIR587 RNA 0.14 TCGA-DK-A1AC-01 6 10907799 10907799 C G SYCP2L Missense_Mutation p.S234C 0.44 tolerated(0.17) benign(0.128) TCGA-DK-A1AC-01 6 109415101 109415101 G A SESN1 Missense_Mutation p.S59L 0.40 tolerated_low_confidence(0.36) benign(0) TCGA-DK-A1AC-01 6 109700850 109700850 C T CD164 Missense_Mutation p.R64Q 0.50 tolerated(0.3) probably_damaging(0.968) TCGA-DK-A1AC-01 6 110301458 110301458 G A GPR6 3'UTR 0.39 TCGA-DK-A1AC-01 6 110501647 110501647 C T CDC40 5'UTR 0.21 TCGA-DK-A1AC-01 6 116879249 116879249 G A FAM26D Missense_Mutation p.D131N 0.34 tolerated(0.1) benign(0.148) TCGA-DK-A1AC-01 6 117086385 117086385 G A FAM162B Missense_Mutation p.P69L 0.40 deleterious(0.05) possibly_damaging(0.889) TCGA-DK-A1AC-01 6 117127788 117127788 A C GPRC6A Missense_Mutation p.H360Q 0.20 tolerated(0.2) benign(0.007) TCGA-DK-A1AC-01 6 117198480 117198480 G A RFX6 Silent p.A14A 0.64 TCGA-DK-A1AC-01 6 119669855 119669855 C T MAN1A1 Missense_Mutation p.E126K 0.35 tolerated(0.82) benign(0.014) TCGA-DK-A1AC-01 6 12123091 12123091 C T HIVEP1 Silent p.I1021I 0.04 TCGA-DK-A1AC-01 6 126203598 126203598 G A NCOA7 Silent p.L200L 0.31 TCGA-DK-A1AC-01 6 129674397 129674412 CCCTGTGACCCTGTCA - LAMA2 Frame_Shift_Del p.P1538Qfs*52 0.38 TCGA-DK-A1AC-01 6 129796544 129796544 A C LAMA2 Silent p.A2483A 0.22 TCGA-DK-A1AC-01 6 130376350 130376350 C T L3MBTL3 Missense_Mutation p.S206L 0.12 tolerated(0.08) probably_damaging(0.996) TCGA-DK-A1AC-01 6 135539213 135539213 G A MYB 3'UTR 0.43 TCGA-DK-A1AC-01 6 136596991 136596991 C T BCLAF1 Missense_Mutation p.D558N 0.29 tolerated(0.19) possibly_damaging(0.728) TCGA-DK-A1AC-01 6 137017141 137017141 C G MAP3K5 Missense_Mutation p.D344H 0.36 deleterious(0.03) probably_damaging(0.967) TCGA-DK-A1AC-01 6 139094917 139094917 G A CCDC28A Missense_Mutation p.E36K 0.17 tolerated_low_confidence(0.11) benign(0.01) TCGA-DK-A1AC-01 6 139094928 139094928 G A CCDC28A Silent p.R39R 0.16 TCGA-DK-A1AC-01 6 139694349 139694349 C T CITED2 Missense_Mutation p.E245K 0.22 deleterious(0.02) benign(0.02) TCGA-DK-A1AC-01 6 144759888 144759888 G A UTRN Missense_Mutation p.D417N 0.26 tolerated(0.06) probably_damaging(1) TCGA-DK-A1AC-01 6 144820495 144820495 G A UTRN Missense_Mutation p.E1566K 0.36 deleterious(0) possibly_damaging(0.626) TCGA-DK-A1AC-01 6 145160371 145160371 G A UTRN Silent p.L3376L 0.32 TCGA-DK-A1AC-01 6 148855934 148855934 C G SASH1 Silent p.T664T 0.45 TCGA-DK-A1AC-01 6 149700055 149700055 G C TAB2 Missense_Mutation p.R335T 0.39 deleterious(0) probably_damaging(0.994) TCGA-DK-A1AC-01 6 151754317 151754317 C A RMND1 Missense_Mutation p.G221V 0.18 deleterious(0.03) possibly_damaging(0.564) TCGA-DK-A1AC-01 6 151754318 151754318 C A RMND1 Missense_Mutation p.G221C 0.17 deleterious(0.02) possibly_damaging(0.88) TCGA-DK-A1AC-01 6 152831425 152831425 C T SYNE1 Missense_Mutation p.E162K 0.43 probably_damaging(0.956) TCGA-DK-A1AC-01 6 155129288 155129288 C T SCAF8 Missense_Mutation p.L356F 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-DK-A1AC-01 6 155143463 155143463 C T SCAF8 Nonsense_Mutation p.Q616* 0.34 TCGA-DK-A1AC-01 6 158924726 158924726 G A TULP4 Missense_Mutation p.R1344Q 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DK-A1AC-01 6 159173048 159173048 C T SYTL3 Nonsense_Mutation p.Q375* 0.15 TCGA-DK-A1AC-01 6 159204664 159204664 G A EZR Nonsense_Mutation p.Q196* 0.20 TCGA-DK-A1AC-01 6 159677592 159677592 C T FNDC1 Silent p.I1701I 0.26 TCGA-DK-A1AC-01 6 159677606 159677606 C G FNDC1 Missense_Mutation p.S1706C 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 6 160500612 160500612 G C IGF2R Missense_Mutation p.V1827L 0.21 tolerated(0.07) probably_damaging(0.929) TCGA-DK-A1AC-01 6 160998217 160998217 A G LPA Missense_Mutation p.S1528P 0.20 tolerated(0.17) probably_damaging(0.994) TCGA-DK-A1AC-01 6 168352586 168352586 C T MLLT4 Silent p.L1511L 0.43 TCGA-DK-A1AC-01 6 169629759 169629759 G C THBS2 Missense_Mutation p.L723V 0.19 tolerated(0.35) benign(0.111) TCGA-DK-A1AC-01 6 17804706 17804706 G A KIF13A Silent p.F780F 0.78 TCGA-DK-A1AC-01 6 21065357 21065357 G A CDKAL1 Silent p.V378V 0.04 TCGA-DK-A1AC-01 6 21231097 21231097 G A CDKAL1 Missense_Mutation p.G523R 0.06 tolerated_low_confidence(0.4) benign(0.002) TCGA-DK-A1AC-01 6 26045930 26045930 G A HIST1H3C Missense_Mutation p.E98K 0.31 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DK-A1AC-01 6 26158404 26158404 G A HIST1H2BD Missense_Mutation p.E3K 0.22 deleterious_low_confidence(0.02) benign(0.37) TCGA-DK-A1AC-01 6 26158626 26158626 G A HIST1H2BD Missense_Mutation p.E77K 0.32 deleterious_low_confidence(0.04) benign(0.346) TCGA-DK-A1AC-01 6 26184336 26184336 G C HIST1H2BE Missense_Mutation p.G105R 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DK-A1AC-01 6 26200177 26200177 C G HIST1H2BF 3'UTR 0.21 TCGA-DK-A1AC-01 6 26217568 26217568 G A HIST1H2AE Silent p.E122E 0.28 TCGA-DK-A1AC-01 6 26368410 26368410 G C BTN3A2 5'UTR 0.38 TCGA-DK-A1AC-01 6 26545407 26545407 C G HMGN4 5'UTR 0.09 TCGA-DK-A1AC-01 6 27834692 27834692 C T HIST1H1B Missense_Mutation p.A206T 0.19 tolerated(1) unknown(0) TCGA-DK-A1AC-01 6 28120950 28120950 G C ZKSCAN8 Missense_Mutation p.E298Q 0.24 tolerated(0.08) benign(0.124) TCGA-DK-A1AC-01 6 30574287 30574287 G C PPP1R10 Missense_Mutation p.L198V 0.18 tolerated(0.25) benign(0.428) TCGA-DK-A1AC-01 6 30594989 30594989 G A ATAT1 Silent p.L3L 0.18 TCGA-DK-A1AC-01 6 30617717 30617717 A G C6orf136 Missense_Mutation p.Y333C 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A1AC-01 6 31602048 31602062 GGGCTCTAAGCCTGA - PRRC2A In_Frame_Del p.S1587_G1591del 0.21 TCGA-DK-A1AC-01 6 31670992 31670992 C T ABHD16A Missense_Mutation p.E23K 0.43 tolerated_low_confidence(0.87) benign(0.006) TCGA-DK-A1AC-01 6 31938901 31938901 G T DXO Missense_Mutation p.A127D 0.46 tolerated(1) benign(0.041) TCGA-DK-A1AC-01 6 32024681 32024681 C T TNXB Splice_Site p.X2609_splice 0.27 TCGA-DK-A1AC-01 6 32157485 32157485 C T PBX2 Missense_Mutation p.E70K 0.29 deleterious(0.04) possibly_damaging(0.595) TCGA-DK-A1AC-01 6 32977305 32977305 G A HLA-DOA Silent p.L3L 0.17 TCGA-DK-A1AC-01 6 33245448 33245448 G C B3GALT4 Silent p.L84L 0.28 TCGA-DK-A1AC-01 6 33247078 33247078 G C WDR46 Missense_Mutation p.S603C 0.18 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 6 34831871 34831871 C T UHRF1BP1 Missense_Mutation p.S1103F 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 6 35447075 35447099 TACTTACCAGGTTCATGGCCTGTGA - TEAD3 Splice_Site p.X111_splice 0.19 TCGA-DK-A1AC-01 6 35543582 35543582 C T FKBP5 3'UTR 0.28 TCGA-DK-A1AC-01 6 36291244 36291244 G C C6orf222 Missense_Mutation p.Q433E 0.23 tolerated(0.09) benign(0.008) TCGA-DK-A1AC-01 6 36452534 36452534 G A KCTD20 Silent p.E300E 0.53 TCGA-DK-A1AC-01 6 36652272 36652272 G T CDKN1A Missense_Mutation p.G132C 0.30 tolerated(0.24) possibly_damaging(0.823) TCGA-DK-A1AC-01 6 37419600 37419600 G C CMTR1 Missense_Mutation p.D186H 0.26 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AC-01 6 39865036 39865036 C G DAAM2 Missense_Mutation p.L866V 0.29 tolerated(1) benign(0.024) TCGA-DK-A1AC-01 6 39895072 39895072 G A MOCS1 Silent p.L82L 0.09 TCGA-DK-A1AC-01 6 41121535 41121535 G A TREML1 Nonsense_Mutation p.Q113* 0.73 TCGA-DK-A1AC-01 6 41129313 41129313 C T TREM2 Missense_Mutation p.V27M 0.11 tolerated(0.93) benign(0.075) TCGA-DK-A1AC-01 6 41243831 41243831 A G TREM1 3'UTR 0.24 TCGA-DK-A1AC-01 6 41621322 41621322 C T MDFI 3'UTR 0.08 TCGA-DK-A1AC-01 6 42532121 42532121 G T UBR2 Nonsense_Mutation p.E22* 0.56 TCGA-DK-A1AC-01 6 42713401 42713401 G A TBCC Silent p.F137F 0.12 TCGA-DK-A1AC-01 6 42981053 42981053 C T MEA1 Missense_Mutation p.E35K 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-DK-A1AC-01 6 43181188 43181188 G C CUL9 Missense_Mutation p.E1791Q 0.12 deleterious(0.04) probably_damaging(0.983) TCGA-DK-A1AC-01 6 43190340 43190340 C T CUL9 Silent p.F2331F 0.39 TCGA-DK-A1AC-01 6 43323779 43323779 C T ZNF318 Silent p.E431E 0.45 TCGA-DK-A1AC-01 6 43475602 43475602 C T LRRC73 Missense_Mutation p.D207N 0.16 deleterious(0) probably_damaging(0.981) TCGA-DK-A1AC-01 6 44226864 44226864 G A NFKBIE 3'UTR 0.15 TCGA-DK-A1AC-01 6 46977301 46977301 G A GPR110 Missense_Mutation p.R624C 0.16 deleterious(0.01) benign(0) TCGA-DK-A1AC-01 6 46977464 46977464 G A GPR110 Silent p.F569F 0.19 TCGA-DK-A1AC-01 6 49700942 49700942 G C CRISP3 Missense_Mutation p.L186V 0.19 deleterious(0.01) possibly_damaging(0.511) TCGA-DK-A1AC-01 6 49753659 49753659 G A PGK2 Silent p.L414L 0.40 TCGA-DK-A1AC-01 6 51612670 51612670 G A PKHD1 Silent p.F3248F 0.35 TCGA-DK-A1AC-01 6 52103570 52103570 G C IL17F Nonsense_Mutation p.S71* 0.17 TCGA-DK-A1AC-01 6 52129560 52129560 G C MCM3 Silent p.L796L 0.38 TCGA-DK-A1AC-01 6 52701150 52701150 G A GSTA5 Silent p.F52F 0.16 TCGA-DK-A1AC-01 6 53010460 53010460 C G GCM1 5'UTR 0.50 TCGA-DK-A1AC-01 6 53660187 53660187 G C LRRC1 Missense_Mutation p.A45P 0.45 deleterious(0) probably_damaging(0.956) TCGA-DK-A1AC-01 6 55739327 55739327 T C BMP5 Missense_Mutation p.R113G 0.19 tolerated(0.39) benign(0.001) TCGA-DK-A1AC-01 6 56707876 56707876 T A RP11-472M19.2 5'Flank 0.43 TCGA-DK-A1AC-01 6 56707877 56707877 C A RP11-472M19.2 5'Flank 0.37 TCGA-DK-A1AC-01 6 57075078 57075078 A C RAB23 Missense_Mutation p.F34C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A1AC-01 6 57183276 57183276 G A PRIM2 Silent p.L11L 0.35 TCGA-DK-A1AC-01 6 70875842 70875842 G A COL19A1 Missense_Mutation p.G804R 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 6 70966509 70966509 C T COL9A1 Missense_Mutation p.D489N 0.08 probably_damaging(0.995) TCGA-DK-A1AC-01 6 72968754 72968754 G A RIMS1 Missense_Mutation p.R998Q 0.42 tolerated(0.14) possibly_damaging(0.566) TCGA-DK-A1AC-01 6 73843259 73843259 G A KCNQ5 Missense_Mutation p.E474K 0.22 deleterious(0.01) benign(0.163) TCGA-DK-A1AC-01 6 73904551 73904551 C T KCNQ5 Missense_Mutation p.T757M 0.45 tolerated(0.11) benign(0.086) TCGA-DK-A1AC-01 6 7398940 7398940 C G RIOK1 Missense_Mutation p.I149M 0.40 tolerated(0.08) benign(0.379) TCGA-DK-A1AC-01 6 74150017 74150017 C T MB21D1 Nonsense_Mutation p.W343* 0.34 TCGA-DK-A1AC-01 6 74171472 74171472 G T MTO1 5'UTR 0.31 TCGA-DK-A1AC-01 6 74440088 74440088 G A CD109 Missense_Mutation p.E100K 0.17 tolerated(0.85) benign(0.001) TCGA-DK-A1AC-01 6 7583091 7583091 C T DSP Nonsense_Mutation p.Q1866* 0.36 TCGA-DK-A1AC-01 6 76425252 76425252 C G SENP6 Nonsense_Mutation p.S1094* 0.41 TCGA-DK-A1AC-01 6 76657219 76657219 C T IMPG1 Missense_Mutation p.G619E 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 6 80228490 80228490 G A LCA5 Missense_Mutation p.S41F 0.34 tolerated(0.63) benign(0.325) TCGA-DK-A1AC-01 6 84618805 84618805 G A CYB5R4 Silent p.L136L 0.14 TCGA-DK-A1AC-01 6 84862559 84862559 G A KIAA1009 Nonsense_Mutation p.Q1112* 0.34 TCGA-DK-A1AC-01 6 89888585 89888585 C G GABRR1 Missense_Mutation p.M448I 0.21 tolerated(0.93) benign(0.004) TCGA-DK-A1AC-01 6 91257893 91257893 G A MAP3K7 Missense_Mutation p.S318L 0.38 tolerated(0.09) benign(0.068) TCGA-DK-A1AC-01 6 97587083 97587083 C T KLHL32 Silent p.F596F 0.19 TCGA-DK-A1AC-01 6 97626329 97626329 C G MMS22L Missense_Mutation p.R890P 0.12 tolerated(0.1) benign(0.284) TCGA-DK-A1AC-01 6 99994315 99994315 C G CCNC Missense_Mutation p.D212H 0.15 deleterious(0.01) possibly_damaging(0.769) TCGA-DK-A1AC-01 7 100033913 100033913 G C PPP1R35 Missense_Mutation p.Q29E 0.28 tolerated(0.34) benign(0) TCGA-DK-A1AC-01 7 100180050 100180050 C T LRCH4 Missense_Mutation p.E85K 0.39 tolerated(0.08) probably_damaging(0.984) TCGA-DK-A1AC-01 7 100201832 100201832 C T PCOLCE Missense_Mutation p.S152L 0.11 tolerated(0.15) benign(0.002) TCGA-DK-A1AC-01 7 100391797 100391797 C T ZAN Intron 0.59 TCGA-DK-A1AC-01 7 100478981 100478981 C T SRRT Silent p.F66F 0.42 TCGA-DK-A1AC-01 7 100549546 100549546 G C MUC3A Missense_Mutation p.V43L 0.17 tolerated(0.05) unknown(0) TCGA-DK-A1AC-01 7 100552079 100552079 C T MUC3A Missense_Mutation p.S277F 0.27 deleterious(0.04) probably_damaging(0.92) TCGA-DK-A1AC-01 7 100552975 100552975 G C MUC3A Missense_Mutation p.Q540H 0.11 tolerated(0.1) benign(0.136) TCGA-DK-A1AC-01 7 100773891 100773891 G A SERPINE1 Missense_Mutation p.R154K 0.49 tolerated(0.2) benign(0.011) TCGA-DK-A1AC-01 7 100806760 100806760 G A VGF Silent p.L455L 0.31 TCGA-DK-A1AC-01 7 102839067 102839067 C G DPY19L2P2 Splice_Site 0.21 TCGA-DK-A1AC-01 7 104752302 104752302 C G KMT2E Missense_Mutation p.Q1367E 0.17 deleterious_low_confidence(0.01) benign(0.027) TCGA-DK-A1AC-01 7 104782887 104782887 C T SRPK2 Missense_Mutation p.E371K 0.19 tolerated(0.42) probably_damaging(0.979) TCGA-DK-A1AC-01 7 116962989 116962989 G A WNT2 Missense_Mutation p.L19F 0.15 tolerated(0.81) unknown(0) TCGA-DK-A1AC-01 7 120767150 120767150 G A CPED1 Missense_Mutation p.E381K 0.18 tolerated(0.05) benign(0.012) TCGA-DK-A1AC-01 7 122337916 122337916 C T RNF133 Missense_Mutation p.E353K 0.31 deleterious(0.02) benign(0.039) TCGA-DK-A1AC-01 7 124482960 124482960 T A POT1 Missense_Mutation p.K355I 0.19 tolerated(0.05) benign(0.157) TCGA-DK-A1AC-01 7 127224211 127224211 C T GCC1 Missense_Mutation p.M342I 0.27 tolerated(0.41) benign(0.001) TCGA-DK-A1AC-01 7 12728246 12728246 G A ARL4A Missense_Mutation p.E123K 0.12 deleterious(0.02) possibly_damaging(0.67) TCGA-DK-A1AC-01 7 128317717 128317717 C A FAM71F2 Silent p.L155L 0.32 TCGA-DK-A1AC-01 7 132990735 132990735 C T EXOC4 Silent p.L192L 0.20 TCGA-DK-A1AC-01 7 134135636 134135636 C T AKR1B1 Missense_Mutation p.E85K 0.21 tolerated(0.34) benign(0.002) TCGA-DK-A1AC-01 7 134873230 134873230 G A WDR91 Silent p.F612F 0.24 TCGA-DK-A1AC-01 7 134873240 134873240 G A WDR91 Missense_Mutation p.S609F 0.23 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AC-01 7 135123034 135123034 G C CNOT4 Missense_Mutation p.L16V 0.52 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 7 135329649 135329649 C T NUP205 Nonsense_Mutation p.Q1856* 0.22 TCGA-DK-A1AC-01 7 136700170 136700170 C G CHRM2 Silent p.V186V 0.48 TCGA-DK-A1AC-01 7 137262020 137262020 G C DGKI Missense_Mutation p.S570C 0.09 deleterious(0) probably_damaging(0.956) TCGA-DK-A1AC-01 7 139083368 139083368 G A LUC7L2 Silent p.L126L 0.49 TCGA-DK-A1AC-01 7 13975376 13975376 G C ETV1 Missense_Mutation p.P171A 0.14 tolerated(0.11) benign(0.006) TCGA-DK-A1AC-01 7 139838913 139838913 G T KDM7A Missense_Mutation p.S91Y 0.27 deleterious(0) benign(0.307) TCGA-DK-A1AC-01 7 140125723 140125723 G C RAB19 Missense_Mutation p.E143Q 0.24 tolerated(0.07) possibly_damaging(0.814) TCGA-DK-A1AC-01 7 140301337 140301337 G A DENND2A Silent p.I287I 0.31 TCGA-DK-A1AC-01 7 142168624 142168624 C T TRBV5-4 Silent p.T33T 0.16 TCGA-DK-A1AC-01 7 142197670 142197670 G A TRBV11-2 RNA 0.25 TCGA-DK-A1AC-01 7 142564247 142564247 G A EPHB6 Missense_Mutation p.V491I 0.20 tolerated(0.2) possibly_damaging(0.717) TCGA-DK-A1AC-01 7 142630628 142630628 G C TRPV5 5'UTR 0.40 TCGA-DK-A1AC-01 7 143747957 143747957 C T OR2A5 Silent p.L155L 0.27 TCGA-DK-A1AC-01 7 144101707 144101707 G A NOBOX Missense_Mutation p.S51F 0.21 deleterious_low_confidence(0.01) benign(0.029) TCGA-DK-A1AC-01 7 148771522 148771522 A G ZNF786 Missense_Mutation p.V85A 0.20 tolerated(1) benign(0) TCGA-DK-A1AC-01 7 150814758 150814758 C T AGAP3 Silent p.F200F 0.23 TCGA-DK-A1AC-01 7 151818704 151818704 C T GALNT11 Missense_Mutation p.S590F 0.31 tolerated(0.54) benign(0.003) TCGA-DK-A1AC-01 7 152373171 152373171 G A XRCC2 5'UTR 0.14 TCGA-DK-A1AC-01 7 15601351 15601351 T C AGMO Silent p.V40V 0.19 TCGA-DK-A1AC-01 7 156437437 156437437 C G RNF32 Missense_Mutation p.P87R 0.18 tolerated(0.06) possibly_damaging(0.823) TCGA-DK-A1AC-01 7 156754887 156754887 G A NOM1 Missense_Mutation p.D559N 0.45 tolerated(0.28) benign(0.359) TCGA-DK-A1AC-01 7 16840963 16840963 G A AGR2 Silent p.L62L 0.20 TCGA-DK-A1AC-01 7 18705862 18705862 G A HDAC9 Silent p.L498L 0.21 TCGA-DK-A1AC-01 7 23240239 23240239 G C NUPL2 Missense_Mutation p.D383H 0.13 deleterious(0.02) probably_damaging(0.948) TCGA-DK-A1AC-01 7 26240198 26240198 C T HNRNPA2B1 5'UTR 0.38 TCGA-DK-A1AC-01 7 2966391 2966391 C T CARD11 Missense_Mutation p.D597N 0.27 tolerated(0.41) benign(0.199) TCGA-DK-A1AC-01 7 30174846 30174846 G A MTURN Missense_Mutation p.D32N 0.18 tolerated_low_confidence(0.15) possibly_damaging(0.908) TCGA-DK-A1AC-01 7 36327382 36327382 G A EEPD1 Silent p.L437L 0.36 TCGA-DK-A1AC-01 7 37960171 37960171 C G EPDR1 5'UTR 0.16 TCGA-DK-A1AC-01 7 42964297 42964297 C T PSMA2 Silent p.V117V 0.16 TCGA-DK-A1AC-01 7 43540819 43540819 G A HECW1 Missense_Mutation p.E1177K 0.17 deleterious(0) possibly_damaging(0.694) TCGA-DK-A1AC-01 7 44573037 44573037 C T NPC1L1 Missense_Mutation p.R801K 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 7 51095844 51095844 C T COBL Silent p.Q983Q 0.20 TCGA-DK-A1AC-01 7 54612455 54612455 C T VSTM2A Missense_Mutation p.P74S 0.33 tolerated(0.75) benign(0.004) TCGA-DK-A1AC-01 7 56141885 56141885 C T SUMF2 Missense_Mutation p.P139S 0.20 deleterious(0.01) possibly_damaging(0.822) TCGA-DK-A1AC-01 7 56141899 56141899 A G SUMF2 Silent p.A143A 0.19 TCGA-DK-A1AC-01 7 56142308 56142308 G A SUMF2 Silent p.E157E 0.12 TCGA-DK-A1AC-01 7 5780687 5780687 G C RNF216 Missense_Mutation p.Q321E 0.23 tolerated(0.93) benign(0.003) TCGA-DK-A1AC-01 7 65554627 65554627 C G ASL Nonsense_Mutation p.S336* 0.21 TCGA-DK-A1AC-01 7 66456253 66456253 C T SBDS Missense_Mutation p.M165I 0.30 tolerated(0.97) benign(0.007) TCGA-DK-A1AC-01 7 66764318 66764318 C T Y_RNA 5'Flank 0.28 TCGA-DK-A1AC-01 7 66771042 66771042 C G STAG3L4 RNA 0.17 TCGA-DK-A1AC-01 7 72657664 72657664 G C GTF2IRD2P1 RNA 0.16 TCGA-DK-A1AC-01 7 72657952 72657952 G A GTF2IRD2P1 RNA 0.24 TCGA-DK-A1AC-01 7 73107716 73107716 G T WBSCR22 Missense_Mutation p.D190Y 0.35 deleterious(0) probably_damaging(0.987) TCGA-DK-A1AC-01 7 74239514 74239514 G A GTF2IRD2 Silent p.G102G 0.29 TCGA-DK-A1AC-01 7 75617097 75617097 C G POR 3'Flank 0.23 TCGA-DK-A1AC-01 7 77247848 77247848 G A PTPN12 Missense_Mutation p.D331N 0.25 deleterious(0.03) possibly_damaging(0.858) TCGA-DK-A1AC-01 7 77423270 77423270 G A TMEM60 3'UTR 0.22 TCGA-DK-A1AC-01 7 77539723 77539723 C G PHTF2 Nonsense_Mutation p.S224* 0.44 TCGA-DK-A1AC-01 7 78130895 78130895 C G MAGI2 Missense_Mutation p.D322H 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 7 82582282 82582282 G C PCLO Missense_Mutation p.P2663A 0.62 unknown(0) TCGA-DK-A1AC-01 7 84702367 84702367 G A SEMA3D Nonsense_Mutation p.Q136* 0.25 TCGA-DK-A1AC-01 7 87912268 87912268 G C STEAP4 Missense_Mutation p.I224M 0.16 deleterious(0) possibly_damaging(0.617) TCGA-DK-A1AC-01 7 88965470 88965471 - ATCC ZNF804B Frame_Shift_Ins p.Q1060Hfs*9 0.25 TCGA-DK-A1AC-01 7 89854699 89854699 G C STEAP2 Silent p.L101L 0.22 TCGA-DK-A1AC-01 7 90528612 90528612 G A CDK14 Missense_Mutation p.D198N 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-DK-A1AC-01 7 90894810 90894810 C T FZD1 Silent p.F205F 0.30 TCGA-DK-A1AC-01 7 913076 913076 C T SUN1 3'UTR 0.50 TCGA-DK-A1AC-01 7 91630771 91630771 G A AKAP9 Missense_Mutation p.E514K 0.20 benign(0.354) TCGA-DK-A1AC-01 7 91690664 91690664 G A AKAP9 Missense_Mutation p.E1898K 0.47 benign(0.018) TCGA-DK-A1AC-01 7 92762320 92762320 G A SAMD9L Missense_Mutation p.H989Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 7 92855779 92855779 C T HEPACAM2 5'UTR 0.27 TCGA-DK-A1AC-01 7 94540505 94540505 G A PPP1R9A Silent p.Q360Q 0.56 TCGA-DK-A1AC-01 7 97362008 97362008 G A TAC1 Silent p.L28L 0.25 TCGA-DK-A1AC-01 7 98528285 98528285 C T TRRAP Silent p.I1141I 0.44 TCGA-DK-A1AC-01 7 98581886 98581886 A G TRRAP Missense_Mutation p.T3069A 0.24 benign(0.086) TCGA-DK-A1AC-01 7 99021515 99021515 C A ATP5J2-PTCD1 Silent p.L650L 0.27 TCGA-DK-A1AC-01 7 99048377 99048377 C T CPSF4 Silent p.L152L 0.24 TCGA-DK-A1AC-01 7 99170633 99170633 A C ZNF655 Missense_Mutation p.K336T 0.21 deleterious(0) benign(0.014) TCGA-DK-A1AC-01 7 99305506 99305506 G C CYP3A7 Missense_Mutation p.L449V 0.50 tolerated(0.06) benign(0.17) TCGA-DK-A1AC-01 7 99691195 99691195 C T MCM7 Intron 0.17 TCGA-DK-A1AC-01 8 100454826 100454826 G A VPS13B Silent p.E1136E 0.19 TCGA-DK-A1AC-01 8 100883099 100883099 C T VPS13B Missense_Mutation p.H3852Y 0.22 deleterious(0.01) benign(0.152) TCGA-DK-A1AC-01 8 101300012 101300012 C T RNF19A Missense_Mutation p.E131K 0.20 deleterious(0) probably_damaging(0.909) TCGA-DK-A1AC-01 8 101932959 101932959 C G YWHAZ Missense_Mutation p.G234R 0.17 tolerated_low_confidence(0.12) unknown(0) TCGA-DK-A1AC-01 8 104080913 104080913 C G ATP6V1C1 Missense_Mutation p.Q363E 0.14 tolerated(0.29) benign(0.127) TCGA-DK-A1AC-01 8 10465561 10465561 G A RP1L1 Missense_Mutation p.A2016V 0.38 unknown(0) TCGA-DK-A1AC-01 8 105235966 105235966 C T RIMS2 Intron 0.19 TCGA-DK-A1AC-01 8 105503092 105503092 C T LRP12 Missense_Mutation p.D797N 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.678) TCGA-DK-A1AC-01 8 10583400 10583400 G A SOX7 Missense_Mutation p.P391S 0.48 tolerated(0.8) benign(0.356) TCGA-DK-A1AC-01 8 106813421 106813421 G A ZFPM2 Missense_Mutation p.G371S 0.18 tolerated(1) benign(0.121) TCGA-DK-A1AC-01 8 107719112 107719112 G C OXR1 Missense_Mutation p.E456Q 0.68 tolerated(0.35) benign(0.01) TCGA-DK-A1AC-01 8 110575628 110575628 C G EBAG9 Intron 0.15 TCGA-DK-A1AC-01 8 113518955 113518955 G A CSMD3 Silent p.V1620V 0.16 TCGA-DK-A1AC-01 8 117782536 117782536 G C UTP23 Silent p.V98V 0.17 TCGA-DK-A1AC-01 8 119391629 119391629 G A SAMD12 3'UTR 0.19 TCGA-DK-A1AC-01 8 122629422 122629422 C G HAS2 Missense_Mutation p.D218H 0.14 tolerated(0.06) possibly_damaging(0.513) TCGA-DK-A1AC-01 8 124266210 124266210 C A ZHX1 Silent p.G659G 0.09 TCGA-DK-A1AC-01 8 132991170 132991170 C G EFR3A Missense_Mutation p.S468C 0.20 deleterious(0) possibly_damaging(0.882) TCGA-DK-A1AC-01 8 136554899 136554899 C G KHDRBS3 Missense_Mutation p.F70L 0.62 deleterious(0) possibly_damaging(0.908) TCGA-DK-A1AC-01 8 139648989 139648989 T C COL22A1 Missense_Mutation p.D1184G 0.16 unknown(0) TCGA-DK-A1AC-01 8 141525439 141525439 C T CHRAC1 3'UTR 0.15 TCGA-DK-A1AC-01 8 141774448 141774448 C T PTK2 Intron 0.16 TCGA-DK-A1AC-01 8 143856563 143856563 G A LYNX1 Intron 0.78 TCGA-DK-A1AC-01 8 144732386 144732386 G C ZNF623 Missense_Mutation p.R115T 0.12 deleterious(0.03) possibly_damaging(0.879) TCGA-DK-A1AC-01 8 144898723 144898723 C T PUF60 Silent p.Q549Q 0.62 TCGA-DK-A1AC-01 8 144940699 144940699 C T EPPK1 Silent p.E2241E 0.05 TCGA-DK-A1AC-01 8 144991306 144991306 G A PLEC Missense_Mutation p.S4365F 0.15 probably_damaging(0.995) TCGA-DK-A1AC-01 8 144997136 144997136 C T PLEC Missense_Mutation p.E2458K 0.29 probably_damaging(0.993) TCGA-DK-A1AC-01 8 145013596 145013596 C T PLEC Intron 0.13 TCGA-DK-A1AC-01 8 145114968 145114968 C T OPLAH 5'UTR 0.69 TCGA-DK-A1AC-01 8 145151087 145151087 C T CYC1 Silent p.F129F 0.18 TCGA-DK-A1AC-01 8 145583548 145583548 C T SLC52A2 Silent p.F132F 0.23 TCGA-DK-A1AC-01 8 145616165 145616165 G A ADCK5 Missense_Mutation p.G151E 0.22 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AC-01 8 145700598 145700598 T C FOXH1 Missense_Mutation p.Y74C 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 8 145947214 145947214 G T ZNF251 Missense_Mutation p.Q611K 0.57 tolerated(0.16) benign(0.149) TCGA-DK-A1AC-01 8 145980141 145980141 C T ZNF251 5'UTR 0.58 TCGA-DK-A1AC-01 8 146076001 146076001 C T COMMD5 3'UTR 0.19 TCGA-DK-A1AC-01 8 17161949 17161949 C T MTMR7 Missense_Mutation p.D478N 0.52 tolerated(0.43) benign(0.004) TCGA-DK-A1AC-01 8 17198941 17198941 C A MTMR7 Missense_Mutation p.Q221H 0.48 tolerated(0.21) possibly_damaging(0.832) TCGA-DK-A1AC-01 8 17722196 17722196 C T FGL1 Missense_Mutation p.G282R 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 8 18725265 18725265 G C PSD3 Missense_Mutation p.S518C 0.39 tolerated(0.22) benign(0.015) TCGA-DK-A1AC-01 8 22864615 22864615 C G RHOBTB2 Missense_Mutation p.S308C 0.54 deleterious(0.01) benign(0.039) TCGA-DK-A1AC-01 8 27301724 27301724 C T PTK2B Missense_Mutation p.P717L 0.47 deleterious(0) benign(0.284) TCGA-DK-A1AC-01 8 27361252 27361252 C T EPHX2 Silent p.L106L 0.32 TCGA-DK-A1AC-01 8 37632915 37632915 G C PROSC Missense_Mutation p.K171N 0.39 tolerated(0.71) benign(0.012) TCGA-DK-A1AC-01 8 37974186 37974186 C T ASH2L Missense_Mutation p.P266S 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 8 38148131 38148131 C T WHSC1L1 Missense_Mutation p.D994N 0.22 deleterious(0.02) benign(0.107) TCGA-DK-A1AC-01 8 38369913 38369913 C T C8orf86 Missense_Mutation p.E222K 0.17 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-DK-A1AC-01 8 42129721 42129721 C G IKBKB Missense_Mutation p.Q35E 0.21 tolerated(0.59) benign(0.006) TCGA-DK-A1AC-01 8 48508407 48508407 G A SPIDR Missense_Mutation p.V378I 0.50 tolerated(0.28) benign(0.046) TCGA-DK-A1AC-01 8 54742015 54742015 C T ATP6V1H Missense_Mutation p.D99N 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 8 54965251 54965251 G A LYPLA1 Silent p.L142L 0.16 TCGA-DK-A1AC-01 8 55060079 55060079 G A MRPL15 Missense_Mutation p.E231K 0.14 tolerated(0.65) benign(0.001) TCGA-DK-A1AC-01 8 56015534 56015534 C T XKR4 Silent p.F162F 0.53 TCGA-DK-A1AC-01 8 56015540 56015540 C T XKR4 Silent p.F164F 0.20 TCGA-DK-A1AC-01 8 59555592 59555592 C A NSMAF Nonsense_Mutation p.E65* 0.10 TCGA-DK-A1AC-01 8 65528701 65528701 C T CYP7B1 Missense_Mutation p.D133N 0.13 tolerated(0.3) benign(0.015) TCGA-DK-A1AC-01 8 66631545 66631545 G A PDE7A Nonsense_Mutation p.Q477* 0.13 TCGA-DK-A1AC-01 8 67089335 67089335 G A CRH Silent p.L126L 0.31 TCGA-DK-A1AC-01 8 67576939 67576939 C T VCPIP1 Missense_Mutation p.R752H 0.17 tolerated(0.14) benign(0.258) TCGA-DK-A1AC-01 8 67577466 67577466 G A VCPIP1 Silent p.F576F 0.18 TCGA-DK-A1AC-01 8 67976635 67976635 T C CSPP1 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0.092) TCGA-DK-A1AC-01 8 68421789 68421789 C T CPA6 Missense_Mutation p.G166E 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 8 6914118 6914118 C T DEFA5 Silent p.Q34Q 0.57 TCGA-DK-A1AC-01 8 70978524 70978524 G A PRDM14 Missense_Mutation p.P377S 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-DK-A1AC-01 8 74205835 74205835 C T RPL7 Missense_Mutation p.E5K 0.15 tolerated(0.22) unknown(0) TCGA-DK-A1AC-01 8 81582772 81582772 C T ZNF704 Missense_Mutation p.G209S 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 8 82391049 82391049 G C FABP4 3'UTR 0.16 TCGA-DK-A1AC-01 8 82606862 82606862 C T SLC10A5 Missense_Mutation p.E116K 0.19 deleterious(0.03) benign(0.006) TCGA-DK-A1AC-01 8 88885315 88885315 C G DCAF4L2 Missense_Mutation p.K295N 0.13 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AC-01 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.13 deleterious(0.02) possibly_damaging(0.887) TCGA-DK-A1AC-01 8 97274371 97274371 G A PTDSS1 Missense_Mutation p.D35N 0.16 tolerated(0.12) benign(0.125) TCGA-DK-A1AC-01 8 97797339 97797339 G C CPQ Missense_Mutation p.D72H 0.13 deleterious(0) possibly_damaging(0.882) TCGA-DK-A1AC-01 8 99149086 99149086 C T POP1 Intron 0.60 TCGA-DK-A1AC-01 9 100672824 100672824 C T C9orf156 Missense_Mutation p.E162K 0.61 deleterious(0.01) benign(0.071) TCGA-DK-A1AC-01 9 101980576 101980576 C T ALG2 Silent p.V297V 0.19 TCGA-DK-A1AC-01 9 105767772 105767772 G A CYLC2 Missense_Mutation p.D287N 0.47 tolerated_low_confidence(0.88) unknown(0) TCGA-DK-A1AC-01 9 107510070 107510070 C T NIPSNAP3A 5'UTR 0.64 TCGA-DK-A1AC-01 9 107588035 107588035 G A ABCA1 Missense_Mutation p.S824L 0.66 deleterious(0.02) benign(0.322) TCGA-DK-A1AC-01 9 111631388 111631388 C T IKBKAP 3'UTR 0.54 TCGA-DK-A1AC-01 9 114195538 114195538 C T KIAA0368 Missense_Mutation p.D453N 0.18 tolerated(0.06) possibly_damaging(0.814) TCGA-DK-A1AC-01 9 116187324 116187324 G T C9orf43 Missense_Mutation p.R278L 0.47 deleterious(0.01) benign(0.046) TCGA-DK-A1AC-01 9 116925054 116925054 G A COL27A1 Missense_Mutation p.G41E 0.57 unknown(0) TCGA-DK-A1AC-01 9 117359915 117359915 C T ATP6V1G1 Silent p.I83I 0.24 TCGA-DK-A1AC-01 9 123924225 123924225 G A CNTRL Silent p.E1727E 0.53 TCGA-DK-A1AC-01 9 124922195 124922195 G A MORN5 5'UTR 0.22 TCGA-DK-A1AC-01 9 125023758 125023758 G A RBM18 Missense_Mutation p.T5I 0.59 tolerated_low_confidence(0.06) benign(0.058) TCGA-DK-A1AC-01 9 127915852 127915852 C T PPP6C Missense_Mutation p.R247Q 0.12 deleterious(0) possibly_damaging(0.903) TCGA-DK-A1AC-01 9 12821926 12821926 G A LURAP1L 3'UTR 0.10 TCGA-DK-A1AC-01 9 130027210 130027210 G A GARNL3 Silent p.L18L 0.20 TCGA-DK-A1AC-01 9 130083018 130083018 G A GARNL3 Silent p.E176E 0.11 TCGA-DK-A1AC-01 9 130592029 130592029 G A ENG Silent p.L99L 0.20 TCGA-DK-A1AC-01 9 130678714 130678714 C T ST6GALNAC4 5'UTR 0.22 TCGA-DK-A1AC-01 9 130981398 130981398 C T DNM1 Silent p.I152I 0.23 TCGA-DK-A1AC-01 9 131019547 131019547 C T GOLGA2 Silent p.V936V 0.62 TCGA-DK-A1AC-01 9 131197963 131197963 G A CERCAM Missense_Mutation p.D523N 0.21 tolerated(0.62) benign(0.058) TCGA-DK-A1AC-01 9 13143491 13143491 C T MPDZ Missense_Mutation p.D1272N 0.61 deleterious(0.05) benign(0.425) TCGA-DK-A1AC-01 9 131749135 131749135 G A NUP188 Missense_Mutation p.E749K 0.10 tolerated(0.22) possibly_damaging(0.823) TCGA-DK-A1AC-01 9 131843464 131843464 C T DOLPP1 Silent p.L18L 0.20 TCGA-DK-A1AC-01 9 133569207 133569207 C T EXOSC2 Missense_Mutation p.A10V 0.13 tolerated(0.29) benign(0.002) TCGA-DK-A1AC-01 9 133799256 133799256 G A FIBCD1 Nonsense_Mutation p.R242* 0.25 TCGA-DK-A1AC-01 9 134340375 134340375 G A PRRC2B Missense_Mutation p.E544K 0.14 tolerated(0.08) benign(0.184) TCGA-DK-A1AC-01 9 135906463 135906463 G A GTF3C5 Missense_Mutation p.R22Q 0.25 tolerated(0.07) benign(0.121) TCGA-DK-A1AC-01 9 136226921 136226921 C T SURF2 Missense_Mutation p.R145C 0.63 benign(0.018) TCGA-DK-A1AC-01 9 136272041 136272041 C T REXO4 3'UTR 0.15 TCGA-DK-A1AC-01 9 136507542 136507542 A G DBH Missense_Mutation p.I234V 0.50 tolerated(0.94) benign(0.014) TCGA-DK-A1AC-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.54 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 9 138590901 138590901 G A SOHLH1 Missense_Mutation p.T46M 0.29 tolerated(0.14) benign(0.02) TCGA-DK-A1AC-01 9 138662868 138662868 G A KCNT1 Silent p.K645K 0.68 TCGA-DK-A1AC-01 9 138713633 138713633 G A CAMSAP1 Silent p.L958L 0.74 TCGA-DK-A1AC-01 9 139748504 139748504 G A MAMDC4 Missense_Mutation p.E216K 0.19 tolerated(0.91) benign(0.087) TCGA-DK-A1AC-01 9 139907259 139907259 C T ABCA2 Silent p.Q1662Q 0.56 TCGA-DK-A1AC-01 9 140062241 140062241 G A GRIN1 Missense_Mutation p.D927N 0.16 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-DK-A1AC-01 9 140083657 140083657 G A SSNA1 Silent p.K64K 0.12 TCGA-DK-A1AC-01 9 140196323 140196323 C T NRARP Missense_Mutation p.E20K 0.12 tolerated(0.49) possibly_damaging(0.874) TCGA-DK-A1AC-01 9 140446923 140446923 C T MRPL41 Silent p.L130L 0.57 TCGA-DK-A1AC-01 9 2060921 2060921 C T SMARCA2 Silent p.L543L 0.15 TCGA-DK-A1AC-01 9 2060974 2060974 G T SMARCA2 Missense_Mutation p.R560S 0.47 benign(0.227) TCGA-DK-A1AC-01 9 33026956 33026956 G A DNAJA1 Missense_Mutation p.G93E 0.65 deleterious(0) benign(0.023) TCGA-DK-A1AC-01 9 33264454 33264454 C T BAG1 Silent p.K73K 0.52 TCGA-DK-A1AC-01 9 33798470 33798470 C T PRSS3 Intron 0.12 TCGA-DK-A1AC-01 9 34125197 34125197 G A DCAF12 Missense_Mutation p.R53W 0.57 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AC-01 9 34709845 34709845 C G CCL21 Missense_Mutation p.K39N 0.71 tolerated(0.16) benign(0.055) TCGA-DK-A1AC-01 9 35673883 35673883 C A CA9 5'UTR 0.61 TCGA-DK-A1AC-01 9 35732998 35732998 G A CREB3 Silent p.P45P 0.67 TCGA-DK-A1AC-01 9 35906254 35906254 G A HRCT1 5'UTR 0.27 TCGA-DK-A1AC-01 9 37441574 37441574 C T ZBTB5 Missense_Mutation p.M325I 0.14 tolerated_low_confidence(0.13) possibly_damaging(0.541) TCGA-DK-A1AC-01 9 37842126 37842126 A T DCAF10 Missense_Mutation p.T232S 0.67 tolerated(0.19) possibly_damaging(0.761) TCGA-DK-A1AC-01 9 40773924 40773924 G T ZNF658 Missense_Mutation p.Q451K 0.21 tolerated(0.12) benign(0.138) TCGA-DK-A1AC-01 9 4661989 4661989 G A SPATA6L Silent p.L29L 0.12 TCGA-DK-A1AC-01 9 5745991 5745991 G A KIAA1432 Missense_Mutation p.E386K 0.47 tolerated(0.59) benign(0.002) TCGA-DK-A1AC-01 9 6007317 6007317 G A KIAA2026 Silent p.F157F 0.20 TCGA-DK-A1AC-01 9 6413479 6413479 C G UHRF2 5'UTR 0.56 TCGA-DK-A1AC-01 9 6605254 6605254 C T GLDC Silent p.L246L 0.17 TCGA-DK-A1AC-01 9 67968467 67968467 G A ANKRD20A1 Missense_Mutation p.D676N 0.13 tolerated(0.24) possibly_damaging(0.811) TCGA-DK-A1AC-01 9 7174617 7174617 G C KDM4C Missense_Mutation p.R1020T 0.71 tolerated(0.06) benign(0.094) TCGA-DK-A1AC-01 9 72349085 72349085 G A PTAR1 Missense_Mutation p.P137S 0.44 tolerated(0.11) possibly_damaging(0.897) TCGA-DK-A1AC-01 9 72930468 72930468 G A SMC5 Missense_Mutation p.E594K 0.49 tolerated(0.09) possibly_damaging(0.61) TCGA-DK-A1AC-01 9 75567869 75567869 C T ALDH1A1 Silent p.L16L 0.34 TCGA-DK-A1AC-01 9 77354857 77354857 A G TRPM6 Missense_Mutation p.S1757P 0.41 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AC-01 9 77732450 77732450 C T OSTF1 Missense_Mutation p.T22M 0.12 tolerated(0.1) benign(0.155) TCGA-DK-A1AC-01 9 7799696 7799696 G A TMEM261 Silent p.I13I 0.71 TCGA-DK-A1AC-01 9 80262682 80262682 C T GNA14 Missense_Mutation p.E10K 0.31 deleterious(0.01) benign(0.007) TCGA-DK-A1AC-01 9 84202699 84202699 G C TLE1 Missense_Mutation p.S625C 0.64 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 9 86587870 86587870 G C HNRNPK Missense_Mutation p.I178M 0.18 deleterious(0) possibly_damaging(0.905) TCGA-DK-A1AC-01 9 86912168 86912168 C T SLC28A3 Missense_Mutation p.E277K 0.55 deleterious(0.04) possibly_damaging(0.517) TCGA-DK-A1AC-01 9 88958054 88958054 G A ZCCHC6 Missense_Mutation p.S341L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1AC-01 9 90500387 90500387 C T SPATA31E1 Missense_Mutation p.R329W 0.62 deleterious(0) benign(0.054) TCGA-DK-A1AC-01 9 91993604 91993604 G A SEMA4D 3'UTR 0.63 TCGA-DK-A1AC-01 9 91994364 91994364 G A SEMA4D Missense_Mutation p.S615L 0.63 deleterious(0) benign(0.133) TCGA-DK-A1AC-01 9 92220696 92220696 C T GADD45G Silent p.I90I 0.25 TCGA-DK-A1AC-01 9 95482795 95482795 G C BICD2 Silent p.L283L 0.54 TCGA-DK-A1AC-01 9 95599742 95599742 G A ANKRD19P RNA 0.74 TCGA-DK-A1AC-01 9 96024958 96024958 G A WNK2 Missense_Mutation p.A1123T 0.15 unknown(0) TCGA-DK-A1AC-01 9 96714549 96714549 G C BARX1 Nonsense_Mutation p.S221* 0.23 TCGA-DK-A1AC-01 X 10104698 10104698 C T WWC3 Missense_Mutation p.S930L 0.29 deleterious(0) possibly_damaging(0.812) TCGA-DK-A1AC-01 X 101908734 101908734 C T GPRASP1 5'UTR 0.54 TCGA-DK-A1AC-01 X 105937496 105937496 G C RNF128 Missense_Mutation p.K61N 0.66 tolerated(0.26) benign(0.01) TCGA-DK-A1AC-01 X 11130276 11130276 G A HCCS Missense_Mutation p.M32I 0.37 tolerated(0.19) benign(0.008) TCGA-DK-A1AC-01 X 122561889 122561889 G C GRIA3 Missense_Mutation p.E659Q 0.68 deleterious(0) probably_damaging(1) TCGA-DK-A1AC-01 X 122598816 122598816 G A GRIA3 Missense_Mutation p.R726Q 0.67 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 X 12906158 12906158 C A TLR7 Nonsense_Mutation p.S844* 0.80 TCGA-DK-A1AC-01 X 132162129 132162129 C T USP26 Silent p.L40L 0.57 TCGA-DK-A1AC-01 X 134494824 134494824 G A ZNF449 Silent p.E460E 0.75 TCGA-DK-A1AC-01 X 138286239 138286239 C T FGF13 Missense_Mutation p.E11K 0.65 deleterious_low_confidence(0.01) benign(0.005) TCGA-DK-A1AC-01 X 1484114 1484114 C G IL3RA Missense_Mutation p.F281L 0.37 tolerated(0.79) benign(0.002) TCGA-DK-A1AC-01 X 152137987 152137987 C T ZNF185 Silent p.L676L 0.73 TCGA-DK-A1AC-01 X 153223253 153223253 G C HCFC1 Missense_Mutation p.P705A 0.59 tolerated(0.14) probably_damaging(0.991) TCGA-DK-A1AC-01 X 153580262 153580262 G C FLNA Silent p.V2299V 0.53 TCGA-DK-A1AC-01 X 155232652 155232652 G A IL9R Missense_Mutation p.C37Y 0.27 tolerated(0.95) possibly_damaging(0.493) TCGA-DK-A1AC-01 X 15809081 15809081 G A ZRSR2 Silent p.L22L 0.80 TCGA-DK-A1AC-01 X 19032082 19032082 G C GPR64 Missense_Mutation p.P274R 0.43 deleterious_low_confidence(0.01) benign(0.058) TCGA-DK-A1AC-01 X 19413274 19413274 G A MAP3K15 Missense_Mutation p.R707C 0.38 deleterious(0.05) benign(0.104) TCGA-DK-A1AC-01 X 43587477 43587477 C A MAOA Missense_Mutation p.H187Q 0.29 deleterious(0.02) benign(0.138) TCGA-DK-A1AC-01 X 44969394 44969418 AAGATTGTGCACGAAAAACAAGCGG - KDM6A Frame_Shift_Del p.D1360Tfs*8 0.78 TCGA-DK-A1AC-01 X 45017019 45017019 G A CXorf36 Missense_Mutation p.R205C 0.25 deleterious(0) possibly_damaging(0.899) TCGA-DK-A1AC-01 X 47083090 47083090 G A CDK16 Missense_Mutation p.G119E 0.73 tolerated_low_confidence(0.17) benign(0.09) TCGA-DK-A1AC-01 X 47083092 47083092 G A CDK16 Missense_Mutation p.E120K 0.73 tolerated_low_confidence(0.45) benign(0.074) TCGA-DK-A1AC-01 X 47083915 47083915 G A CDK16 Missense_Mutation p.E186K 0.90 deleterious(0.02) benign(0.03) TCGA-DK-A1AC-01 X 48891000 48891000 G C TFE3 Silent p.L372L 0.29 TCGA-DK-A1AC-01 X 49079298 49079298 C T CACNA1F Splice_Site p.X707_splice 0.40 TCGA-DK-A1AC-01 X 50052841 50052841 G A CCNB3 Missense_Mutation p.E558K 0.78 tolerated(0.73) benign(0.003) TCGA-DK-A1AC-01 X 50370665 50370665 C G SHROOM4 Missense_Mutation p.G969A 0.49 tolerated(1) benign(0.07) TCGA-DK-A1AC-01 X 51075817 51075817 G A NUDT10 5'UTR 0.70 TCGA-DK-A1AC-01 X 54473866 54473866 C T FGD1 Missense_Mutation p.E820K 0.86 tolerated(0.11) possibly_damaging(0.88) TCGA-DK-A1AC-01 X 55247849 55247849 G A PAGE5 Missense_Mutation p.E32K 0.42 tolerated(0.74) benign(0.01) TCGA-DK-A1AC-01 X 57935505 57935505 G A ZXDA Silent p.F450F 0.39 TCGA-DK-A1AC-01 X 70355032 70355032 G A MED12 Missense_Mutation p.E1652K 0.87 possibly_damaging(0.782) TCGA-DK-A1AC-01 X 71494972 71494972 C T RPS4X Silent p.E97E 0.59 TCGA-DK-A1AC-01 X 71494974 71494974 C G RPS4X Missense_Mutation p.E97Q 0.59 deleterious(0.02) possibly_damaging(0.842) TCGA-DK-A1AC-01 X 71846900 71846900 C G PHKA1 Splice_Site p.X572_splice 0.68 TCGA-DK-A1AC-01 X 73812835 73812835 G A RLIM Silent p.V105V 0.61 TCGA-DK-A1AC-01 X 99661856 99661856 G C PCDH19 Missense_Mutation p.N580K 0.58 tolerated(0.05) possibly_damaging(0.458) TCGA-DK-A1AC-01 X 99901230 99901230 G C SRPX2 5'UTR 0.61 TCGA-DK-A1AC-01 Y 14885574 14885574 G T USP9Y Missense_Mutation p.W682C 0.73 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AC-01 Y 14885804 14885804 G C USP9Y Missense_Mutation p.R759T 0.70 tolerated(0.06) probably_damaging(0.978) TCGA-DK-A1AC-01 Y 14885824 14885824 G T USP9Y Missense_Mutation p.D766Y 0.76 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AD-01 10 105361657 105361657 A G SH3PXD2A Silent p.N1078N 0.30 TCGA-DK-A1AD-01 10 121580377 121580377 A G INPP5F Missense_Mutation p.R636G 0.34 tolerated(0.12) benign(0.297) TCGA-DK-A1AD-01 10 124800022 124800022 G C ACADSB Missense_Mutation p.G115A 0.40 tolerated(0.05) benign(0.174) TCGA-DK-A1AD-01 10 26377316 26377316 G T MYO3A Missense_Mutation p.R515L 0.60 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A1AD-01 10 43292463 43292463 G A BMS1 Missense_Mutation p.E591K 0.22 deleterious(0.05) benign(0.383) TCGA-DK-A1AD-01 10 50311870 50311870 G T VSTM4 Intron 0.31 TCGA-DK-A1AD-01 10 50819136 50819136 C T SLC18A3 Missense_Mutation p.T117M 0.33 tolerated(0.22) benign(0.025) TCGA-DK-A1AD-01 10 72511899 72511899 T G ADAMTS14 Missense_Mutation p.M885R 0.26 deleterious(0) possibly_damaging(0.493) TCGA-DK-A1AD-01 10 73494069 73494069 G A CDH23 Missense_Mutation p.D1398N 0.27 tolerated(0.08) probably_damaging(0.959) TCGA-DK-A1AD-01 10 75051461 75051461 C G TTC18 Missense_Mutation p.E723Q 0.33 deleterious(0.04) probably_damaging(0.985) TCGA-DK-A1AD-01 10 75184443 75184443 G C MSS51 Silent p.L417L 0.41 TCGA-DK-A1AD-01 11 10022532 10022532 C A SBF2 Nonsense_Mutation p.E264* 0.31 TCGA-DK-A1AD-01 11 101374954 101374954 T C TRPC6 Missense_Mutation p.H249R 0.12 deleterious(0) probably_damaging(0.989) TCGA-DK-A1AD-01 11 10483070 10483070 C T AMPD3 Missense_Mutation p.P11S 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.798) TCGA-DK-A1AD-01 11 113102975 113102975 C - NCAM1 Frame_Shift_Del p.S492Vfs*34 0.27 TCGA-DK-A1AD-01 11 119535753 119535753 C A PVRL1 Missense_Mutation p.D420Y 0.34 deleterious(0) possibly_damaging(0.892) TCGA-DK-A1AD-01 11 128807621 128807621 G A TP53AIP1 Silent p.L31L 0.28 TCGA-DK-A1AD-01 11 55371622 55371622 G T OR4C11 Silent p.A76A 0.50 TCGA-DK-A1AD-01 11 56185264 56185264 A G OR5R1 Missense_Mutation p.Y149H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1AD-01 11 57799250 57799250 A C OR6Q1 Missense_Mutation p.K276Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AD-01 11 57947275 57947275 A G OR9Q1 Missense_Mutation p.Y120C 0.27 deleterious(0.02) benign(0.077) TCGA-DK-A1AD-01 11 62560155 62560157 GTT - NXF1 In_Frame_Del p.N593del 0.34 TCGA-DK-A1AD-01 11 86663440 86663440 T G FZD4 Missense_Mutation p.M120L 0.37 tolerated(0.37) benign(0.012) TCGA-DK-A1AD-01 11 8947287 8947287 C T C11orf16 Silent p.L309L 0.31 TCGA-DK-A1AD-01 11 94861970 94861970 G A ENDOD1 Missense_Mutation p.D244N 0.45 tolerated(0.56) possibly_damaging(0.688) TCGA-DK-A1AD-01 12 11138589 11138589 G C TAS2R50 Missense_Mutation p.L291V 0.25 tolerated(0.07) benign(0.393) TCGA-DK-A1AD-01 12 123471235 123471235 C T PITPNM2 Silent p.P1185P 0.12 TCGA-DK-A1AD-01 12 12794985 12794985 A G CREBL2 3'UTR 0.25 TCGA-DK-A1AD-01 12 14927572 14927572 G A H2AFJ Silent p.L56L 0.21 TCGA-DK-A1AD-01 12 29630357 29630357 G T OVCH1 Missense_Mutation p.A388D 0.57 deleterious(0.01) possibly_damaging(0.626) TCGA-DK-A1AD-01 12 30829450 30829450 G A IPO8 Silent p.I237I 0.21 TCGA-DK-A1AD-01 12 39079368 39079368 C T CPNE8 Missense_Mutation p.A399T 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-DK-A1AD-01 12 39730987 39730987 T C KIF21A Missense_Mutation p.M777V 0.31 deleterious(0) benign(0.009) TCGA-DK-A1AD-01 12 41967486 41967486 G A PDZRN4 Missense_Mutation p.E969K 0.34 deleterious(0.01) possibly_damaging(0.725) TCGA-DK-A1AD-01 12 49427929 49427933 CGGCC - KMT2D Frame_Shift_Del p.G3553* 0.50 TCGA-DK-A1AD-01 12 50384549 50384549 G A RACGAP1 Missense_Mutation p.P581S 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A1AD-01 12 51090911 51090911 C A DIP2B Silent p.I667I 0.17 TCGA-DK-A1AD-01 12 53676162 53676162 C G ESPL1 Missense_Mutation p.L912V 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 12 6437458 6437458 T A PLEKHG6 3'UTR 0.38 TCGA-DK-A1AD-01 12 6645670 6645670 A G GAPDH Missense_Mutation p.I14V 0.12 deleterious_low_confidence(0.01) benign(0.002) TCGA-DK-A1AD-01 12 72388270 72388270 G A TPH2 Silent p.K331K 0.19 TCGA-DK-A1AD-01 12 8926198 8926198 G A RIMKLB Missense_Mutation p.E327K 0.59 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-DK-A1AD-01 13 30829724 30829724 G A KATNAL1 Nonsense_Mutation p.R118* 0.69 TCGA-DK-A1AD-01 13 32929379 32929379 T C BRCA2 Silent p.N2463N 0.34 TCGA-DK-A1AD-01 13 61057916 61057916 C G TDRD3 Nonsense_Mutation p.S168* 0.26 TCGA-DK-A1AD-01 14 45432544 45432544 A G FAM179B Missense_Mutation p.Y307C 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A1AD-01 14 45623913 45623913 A - FANCM Frame_Shift_Del p.N401Mfs*10 0.39 TCGA-DK-A1AD-01 14 52781858 52781858 C G PTGER2 Missense_Mutation p.Q198E 0.08 tolerated(1) benign(0.102) TCGA-DK-A1AD-01 14 77845304 77845304 G C SAMD15 Missense_Mutation p.D515H 0.35 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A1AD-01 14 91700947 91700947 G T GPR68 Missense_Mutation p.L150M 0.42 tolerated(0.08) possibly_damaging(0.792) TCGA-DK-A1AD-01 14 96757944 96757944 G A ATG2B Nonsense_Mutation p.R1858* 0.18 TCGA-DK-A1AD-01 15 23444056 23444056 C A AC100757.1 5'Flank 0.13 TCGA-DK-A1AD-01 15 28501377 28501377 C A HERC2 Silent p.T868T 0.24 TCGA-DK-A1AD-01 15 41961492 41961492 C T MGA Missense_Mutation p.R134C 0.34 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 15 48776085 48776085 A T FBN1 Missense_Mutation p.N1256K 0.47 benign(0.18) TCGA-DK-A1AD-01 15 52901214 52901214 T C FAM214A Missense_Mutation p.M633V 0.21 tolerated(0.57) benign(0.001) TCGA-DK-A1AD-01 15 54306851 54306851 G T UNC13C Missense_Mutation p.R584L 0.28 tolerated_low_confidence(0.12) benign(0.12) TCGA-DK-A1AD-01 15 69746006 69746006 C T RPLP1 Silent p.L31L 0.49 TCGA-DK-A1AD-01 15 72459414 72459414 G A GRAMD2 Missense_Mutation p.S131F 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A1AD-01 15 72636265 72636265 C T HEXA 3'UTR 0.38 TCGA-DK-A1AD-01 15 76726455 76726455 C T SCAPER Missense_Mutation p.G1092D 0.28 tolerated(0.6) benign(0.088) TCGA-DK-A1AD-01 16 10971204 10971204 C T CIITA Missense_Mutation p.P6L 0.54 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DK-A1AD-01 16 31141847 31141847 C T KAT8 Silent p.L359L 0.37 TCGA-DK-A1AD-01 16 3786148 3786148 A C CREBBP Nonsense_Mutation p.Y1539* 0.56 TCGA-DK-A1AD-01 16 3828045 3828045 C G CREBBP Missense_Mutation p.V694L 0.17 benign(0.306) TCGA-DK-A1AD-01 16 56666569 56666569 C T MT1M 5'UTR 0.45 TCGA-DK-A1AD-01 16 56966122 56966122 G A HERPUD1 5'UTR 0.50 TCGA-DK-A1AD-01 16 66881069 66881069 C T CA7 Silent p.L59L 0.44 TCGA-DK-A1AD-01 16 68404861 68404861 G A SMPD3 Silent p.L408L 0.23 TCGA-DK-A1AD-01 16 81161440 81161440 G A PKD1L2 RNA 0.22 TCGA-DK-A1AD-01 17 1003885 1003885 G A ABR Silent p.L113L 0.58 TCGA-DK-A1AD-01 17 1003907 1003907 G A ABR Silent p.I105I 0.65 TCGA-DK-A1AD-01 17 10206521 10206521 C T MYH13 Missense_Mutation p.E1887K 0.45 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AD-01 17 19480737 19480737 G A SLC47A1 Silent p.P528P 0.20 TCGA-DK-A1AD-01 17 28712233 28712233 G A CPD Missense_Mutation p.A325T 0.34 deleterious(0.01) probably_damaging(1) TCGA-DK-A1AD-01 17 46111232 46111232 C G COPZ2 Missense_Mutation p.E87Q 0.19 deleterious(0.05) benign(0.242) TCGA-DK-A1AD-01 17 48681582 48681582 C A CACNA1G Silent p.I1412I 0.21 TCGA-DK-A1AD-01 17 48681612 48681612 C T CACNA1G Silent p.F1422F 0.21 TCGA-DK-A1AD-01 17 48683487 48683487 G A CACNA1G Intron 0.17 TCGA-DK-A1AD-01 17 48761367 48761367 C A ABCC3 Missense_Mutation p.R1338S 0.70 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AD-01 17 63052540 63052540 C T GNA13 Missense_Mutation p.E58K 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 17 64171210 64171210 G C CEP112 Missense_Mutation p.S141C 0.14 deleterious(0) possibly_damaging(0.698) TCGA-DK-A1AD-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.87 tolerated(0.08) probably_damaging(0.91) TCGA-DK-A1AD-01 18 28736055 28736055 G T DSC1 Missense_Mutation p.A141D 0.23 deleterious(0) benign(0.169) TCGA-DK-A1AD-01 18 29206280 29206280 G C B4GALT6 Missense_Mutation p.H323D 0.73 deleterious(0) probably_damaging(0.987) TCGA-DK-A1AD-01 18 46904947 46904947 A G DYM Silent p.P137P 0.33 TCGA-DK-A1AD-01 18 67993562 67993562 G A SOCS6 3'UTR 0.41 TCGA-DK-A1AD-01 18 74606980 74606980 G A ZNF236 Missense_Mutation p.E475K 0.37 tolerated(0.26) possibly_damaging(0.781) TCGA-DK-A1AD-01 18 74617282 74617282 C G ZNF236 Missense_Mutation p.I734M 0.41 tolerated(0.07) possibly_damaging(0.857) TCGA-DK-A1AD-01 19 12059541 12059541 C T ZNF700 Silent p.F234F 0.21 TCGA-DK-A1AD-01 19 1251558 1251558 C T MIDN Intron 0.50 TCGA-DK-A1AD-01 19 13936478 13936478 C T ZSWIM4 Missense_Mutation p.A660V 0.55 deleterious(0.04) unknown(0) TCGA-DK-A1AD-01 19 20807939 20807939 C G ZNF626 Missense_Mutation p.K248N 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-DK-A1AD-01 19 3179545 3179545 C T S1PR4 Missense_Mutation p.T252M 0.27 deleterious(0.01) possibly_damaging(0.81) TCGA-DK-A1AD-01 19 36369852 36369852 C T APLP1 Silent p.L571L 0.69 TCGA-DK-A1AD-01 19 42830399 42830399 G A MEGF8 Missense_Mutation p.A2T 0.46 deleterious_low_confidence(0.03) unknown(0) TCGA-DK-A1AD-01 19 43439844 43439844 C G PSG7 Missense_Mutation p.G48R 0.15 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AD-01 19 44099434 44099434 C T IRGQ Silent p.G19G 0.19 TCGA-DK-A1AD-01 19 4475339 4475339 C T HDGFRP2 Missense_Mutation p.T47I 0.38 deleterious(0) possibly_damaging(0.702) TCGA-DK-A1AD-01 19 45375390 45375390 G A PVRL2 Silent p.V253V 0.15 TCGA-DK-A1AD-01 19 45668404 45668404 C A TRAPPC6A Missense_Mutation p.G59C 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A1AD-01 19 48800570 48800570 T C CCDC114 Missense_Mutation p.H559R 0.47 tolerated(1) benign(0.003) TCGA-DK-A1AD-01 19 49538834 49538834 G A CGB1 3'Flank 0.37 TCGA-DK-A1AD-01 19 50666011 50666011 C A IZUMO2 Missense_Mutation p.G98C 0.32 tolerated(0.05) benign(0.044) TCGA-DK-A1AD-01 19 50839832 50839832 C A NAPSB RNA 0.20 TCGA-DK-A1AD-01 19 55263182 55263182 A T KIR2DL3 Missense_Mutation p.H266L 0.35 tolerated(0.24) benign(0.374) TCGA-DK-A1AD-01 19 55689707 55689707 G T SYT5 Missense_Mutation p.L37M 0.60 deleterious(0.03) benign(0.438) TCGA-DK-A1AD-01 19 58352533 58352533 A T ZNF587B Missense_Mutation p.H164L 0.22 tolerated(0.09) benign(0.133) TCGA-DK-A1AD-01 19 8193911 8193911 C T FBN3 Splice_Site p.X766_splice 0.31 TCGA-DK-A1AD-01 1 117699368 117699368 C A VTCN1 Silent p.S91S 0.24 TCGA-DK-A1AD-01 1 144871840 144871840 G C PDE4DIP Missense_Mutation p.Q1708E 0.04 tolerated(0.39) possibly_damaging(0.599) TCGA-DK-A1AD-01 1 144918839 144918839 C T PDE4DIP Silent p.L449L 0.18 TCGA-DK-A1AD-01 1 150675844 150675844 G T HORMAD1 Missense_Mutation p.S325Y 0.14 deleterious(0) benign(0.047) TCGA-DK-A1AD-01 1 150938518 150938518 C G CERS2 3'UTR 0.21 TCGA-DK-A1AD-01 1 151205031 151205031 C T PIP5K1A Missense_Mutation p.S164F 0.22 deleterious(0) probably_damaging(0.977) TCGA-DK-A1AD-01 1 151205035 151205035 C T PIP5K1A Silent p.L165L 0.22 TCGA-DK-A1AD-01 1 151205059 151205059 C T PIP5K1A Silent p.L173L 0.30 TCGA-DK-A1AD-01 1 151205113 151205113 C G PIP5K1A Missense_Mutation p.F191L 0.35 deleterious(0.01) benign(0.17) TCGA-DK-A1AD-01 1 151336888 151336888 A T SELENBP1 3'UTR 0.13 TCGA-DK-A1AD-01 1 152282887 152282887 T C FLG Missense_Mutation p.H1492R 0.13 benign(0.227) TCGA-DK-A1AD-01 1 156011461 156011461 G C UBQLN4 Missense_Mutation p.L490V 0.43 tolerated(0.1) benign(0.397) TCGA-DK-A1AD-01 1 158263070 158263070 G T CD1C Missense_Mutation p.V320L 0.09 deleterious(0.05) benign(0.015) TCGA-DK-A1AD-01 1 160187319 160187319 G A DCAF8 3'UTR 0.35 TCGA-DK-A1AD-01 1 160326942 160326942 G C NCSTN Missense_Mutation p.E636Q 0.08 tolerated(0.07) possibly_damaging(0.714) TCGA-DK-A1AD-01 1 168007717 168007717 C T DCAF6 Missense_Mutation p.T573I 0.18 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-DK-A1AD-01 1 16945482 16945482 G T RP5-1182A14.5 3'Flank 0.10 TCGA-DK-A1AD-01 1 17313397 17313397 C G ATP13A2 Missense_Mutation p.E1046D 0.19 deleterious(0) probably_damaging(0.986) TCGA-DK-A1AD-01 1 179019501 179019501 G A FAM20B Splice_Site p.X155_splice 0.33 TCGA-DK-A1AD-01 1 192127775 192127775 C T RGS18 Missense_Mutation p.T3I 0.23 tolerated(0.06) benign(0.007) TCGA-DK-A1AD-01 1 200587160 200587160 C G KIF14 Missense_Mutation p.R231T 0.85 tolerated(0.08) benign(0.15) TCGA-DK-A1AD-01 1 22176612 22176612 C G HSPG2 Silent p.L2456L 0.31 TCGA-DK-A1AD-01 1 227204728 227204728 C G CDC42BPA Missense_Mutation p.E1512Q 0.36 tolerated(0.18) benign(0.406) TCGA-DK-A1AD-01 1 23382467 23382467 C G KDM1A Nonsense_Mutation p.S309* 0.21 TCGA-DK-A1AD-01 1 236729993 236729993 C T HEATR1 Missense_Mutation p.E1421K 0.44 tolerated(0.45) benign(0.047) TCGA-DK-A1AD-01 1 24392393 24392393 G A MYOM3 Silent p.L1174L 0.28 TCGA-DK-A1AD-01 1 247921243 247921243 C A OR1C1 Missense_Mutation p.A156S 0.85 tolerated(0.36) probably_damaging(0.997) TCGA-DK-A1AD-01 1 27058057 27058057 C T ARID1A Nonsense_Mutation p.Q589* 0.47 TCGA-DK-A1AD-01 1 39888185 39888185 G A MACF1 Missense_Mutation p.R3257Q 0.30 possibly_damaging(0.559) TCGA-DK-A1AD-01 1 39889764 39889764 G C MACF1 Missense_Mutation p.R3343T 0.18 probably_damaging(0.96) TCGA-DK-A1AD-01 1 43205572 43205572 C T CLDN19 Missense_Mutation p.A55T 0.20 deleterious(0.04) probably_damaging(0.991) TCGA-DK-A1AD-01 1 44441505 44441505 G T ATP6V0B Missense_Mutation p.R34L 0.28 tolerated(0.29) benign(0.014) TCGA-DK-A1AD-01 1 52305975 52305975 C T NRD1 Missense_Mutation p.D185N 0.30 tolerated_low_confidence(0.37) possibly_damaging(0.539) TCGA-DK-A1AD-01 1 66064359 66064359 C T LEPR Missense_Mutation p.S289L 0.17 tolerated(0.48) benign(0.001) TCGA-DK-A1AD-01 1 90400469 90400469 A G LRRC8D Silent p.T614T 0.31 TCGA-DK-A1AD-01 1 91182264 91182264 G A BARHL2 Silent p.S163S 0.29 TCGA-DK-A1AD-01 1 9324830 9324830 C T H6PD Missense_Mutation p.R760W 0.29 deleterious(0) probably_damaging(0.982) TCGA-DK-A1AD-01 1 94343392 94343392 C T DNTTIP2 Silent p.A33A 0.56 TCGA-DK-A1AD-01 20 17446013 17446013 C G PCSK2 Silent p.L415L 0.13 TCGA-DK-A1AD-01 20 23017255 23017255 C T SSTR4 Missense_Mutation p.R379C 0.23 tolerated_low_confidence(0.08) benign(0.153) TCGA-DK-A1AD-01 20 34295071 34295071 G C RBM39 Missense_Mutation p.F426L 0.17 tolerated(0.12) benign(0.031) TCGA-DK-A1AD-01 20 54945601 54945601 T G AURKA Missense_Mutation p.L323F 0.26 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AD-01 20 5935320 5935320 T G MCM8 Missense_Mutation p.I107S 0.22 tolerated(0.33) benign(0.097) TCGA-DK-A1AD-01 20 61439014 61439014 G - OGFR Intron 0.29 TCGA-DK-A1AD-01 20 62340259 62340259 G A ZGPAT Silent p.A109A 0.31 TCGA-DK-A1AD-01 20 76884 76884 G C DEFB125 Silent p.L99L 0.57 TCGA-DK-A1AD-01 21 22656638 22656638 A G NCAM2 Missense_Mutation p.I85M 0.36 tolerated(0.07) possibly_damaging(0.855) TCGA-DK-A1AD-01 21 31964950 31964950 C T KRTAP6-3 Silent p.G55G 0.35 TCGA-DK-A1AD-01 21 33076179 33076179 G A SCAF4 Missense_Mutation p.R74C 0.29 probably_damaging(1) TCGA-DK-A1AD-01 21 40636481 40636481 C A BRWD1 Missense_Mutation p.G597V 0.09 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AD-01 21 40636563 40636563 C T BRWD1 Missense_Mutation p.D570N 0.11 deleterious(0) probably_damaging(0.98) TCGA-DK-A1AD-01 21 40636565 40636565 C T BRWD1 Missense_Mutation p.R569K 0.09 deleterious(0) possibly_damaging(0.867) TCGA-DK-A1AD-01 21 40636822 40636822 C T BRWD1 Missense_Mutation p.E552K 0.08 tolerated(0.19) probably_damaging(0.952) TCGA-DK-A1AD-01 21 40636873 40636873 C G BRWD1 Missense_Mutation p.D535H 0.08 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AD-01 21 46945798 46945798 A G SLC19A1 Missense_Mutation p.I409T 0.25 deleterious(0.04) possibly_damaging(0.61) TCGA-DK-A1AD-01 22 21377871 21377871 A G P2RX6 Missense_Mutation p.Y285C 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 22 29709953 29709953 C G RASL10A Missense_Mutation p.W81C 0.36 tolerated(0.14) probably_damaging(0.951) TCGA-DK-A1AD-01 22 39263030 39263030 C T CBX6 Silent p.G141G 0.33 TCGA-DK-A1AD-01 22 46655856 46655856 C T PKDREJ Missense_Mutation p.G1122S 0.16 deleterious(0) probably_damaging(0.977) TCGA-DK-A1AD-01 22 50280171 50280171 T A ZBED4 Missense_Mutation p.L954H 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 2 102460640 102460640 C T MAP4K4 Missense_Mutation p.S367F 0.15 deleterious_low_confidence(0) unknown(0) TCGA-DK-A1AD-01 2 112621282 112621282 G A ANAPC1 Missense_Mutation p.S341L 0.13 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AD-01 2 131487541 131487541 T C GPR148 Missense_Mutation p.Y273H 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A1AD-01 2 131812980 131812980 G A FAM168B Missense_Mutation p.H114Y 0.46 tolerated_low_confidence(0.06) probably_damaging(0.979) TCGA-DK-A1AD-01 2 133540922 133540922 C G NCKAP5 Missense_Mutation p.M1154I 0.24 tolerated(0.19) benign(0.002) TCGA-DK-A1AD-01 2 141245258 141245258 G C LRP1B Missense_Mutation p.I3057M 0.31 possibly_damaging(0.639) TCGA-DK-A1AD-01 2 163075644 163075644 G A FAP Missense_Mutation p.P179L 0.48 tolerated(0.09) benign(0.006) TCGA-DK-A1AD-01 2 163144789 163144789 C G IFIH1 Missense_Mutation p.Q317H 0.26 deleterious(0.01) possibly_damaging(0.575) TCGA-DK-A1AD-01 2 172950262 172950262 G A DLX1 5'UTR 0.29 TCGA-DK-A1AD-01 2 175664879 175664879 C G CHN1 Missense_Mutation p.E449Q 0.42 tolerated(0.46) probably_damaging(0.994) TCGA-DK-A1AD-01 2 179412163 179412163 G A TTN Missense_Mutation p.S31397L 0.21 TCGA-DK-A1AD-01 2 179462655 179462655 A G TTN Missense_Mutation p.I19081T 0.34 TCGA-DK-A1AD-01 2 183582687 183582687 G C DNAJC10 5'UTR 0.20 TCGA-DK-A1AD-01 2 191847160 191847160 T C STAT1 Missense_Mutation p.K511E 0.46 tolerated(0.13) benign(0.081) TCGA-DK-A1AD-01 2 200800710 200800710 G C TYW5 Missense_Mutation p.S212C 0.20 tolerated(0.18) benign(0.007) TCGA-DK-A1AD-01 2 209200027 209200027 C T PIKFYVE Intron 0.51 TCGA-DK-A1AD-01 2 211158490 211158490 C T MYL1 Silent p.L171L 0.20 TCGA-DK-A1AD-01 2 211525295 211525295 G A CPS1 Silent p.K1287K 0.28 TCGA-DK-A1AD-01 2 212522499 212522499 G A ERBB4 Silent p.S642S 0.44 TCGA-DK-A1AD-01 2 232156134 232156134 C T ARMC9 Silent p.F565F 0.34 TCGA-DK-A1AD-01 2 232995343 232995343 G A DIS3L2 Missense_Mutation p.D206N 0.36 tolerated(0.59) benign(0.001) TCGA-DK-A1AD-01 2 233404450 233404450 G C CHRNG 5'UTR 0.31 TCGA-DK-A1AD-01 2 42284440 42284440 C T PKDCC Silent p.L434L 0.24 TCGA-DK-A1AD-01 2 44429053 44429053 A G PPM1B Missense_Mutation p.I239V 0.39 tolerated(1) benign(0.004) TCGA-DK-A1AD-01 2 74474321 74474321 C T SLC4A5 Missense_Mutation p.R634H 0.10 deleterious(0) probably_damaging(1) TCGA-DK-A1AD-01 2 86434368 86434368 C T MRPL35 Missense_Mutation p.A99V 0.13 tolerated(0.31) benign(0.008) TCGA-DK-A1AD-01 2 97268530 97268530 G A KANSL3 Missense_Mutation p.S740F 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.643) TCGA-DK-A1AD-01 3 112564709 112564709 C T CD200R1L 5'UTR 0.24 TCGA-DK-A1AD-01 3 113380114 113380114 G A KIAA2018 Missense_Mutation p.P139S 0.04 benign(0.099) TCGA-DK-A1AD-01 3 142747454 142747454 G C U2SURP Missense_Mutation p.E526Q 0.27 tolerated(0.2) benign(0.109) TCGA-DK-A1AD-01 3 145806415 145806415 C T PLOD2 Silent p.L321L 0.32 TCGA-DK-A1AD-01 3 152554107 152554107 T C P2RY1 Missense_Mutation p.V179A 0.41 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AD-01 3 169706098 169706098 C T SEC62 Silent p.L227L 0.21 TCGA-DK-A1AD-01 3 184870502 184870502 G T C3orf70 Missense_Mutation p.P37Q 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-A1AD-01 3 191047481 191047481 C G CCDC50 Missense_Mutation p.I6M 0.42 deleterious(0) probably_damaging(0.919) TCGA-DK-A1AD-01 3 40464569 40464569 T A ENTPD3 Missense_Mutation p.S354T 0.43 deleterious(0.01) probably_damaging(0.952) TCGA-DK-A1AD-01 3 41841697 41841697 C T ULK4 Missense_Mutation p.G646E 0.38 deleterious(0.03) benign(0.347) TCGA-DK-A1AD-01 3 42678913 42678913 C T NKTR Nonsense_Mutation p.Q573* 0.22 TCGA-DK-A1AD-01 3 44612062 44612062 G C ZKSCAN7 Missense_Mutation p.R487T 0.20 deleterious(0) probably_damaging(0.928) TCGA-DK-A1AD-01 3 44674010 44674010 G A ZNF197 Missense_Mutation p.E230K 0.03 tolerated(0.16) probably_damaging(0.925) TCGA-DK-A1AD-01 3 44945406 44945406 G A TGM4 Missense_Mutation p.M334I 0.29 deleterious(0) possibly_damaging(0.869) TCGA-DK-A1AD-01 3 46006596 46006596 T A FYCO1 Missense_Mutation p.S1027C 0.26 deleterious(0.02) possibly_damaging(0.576) TCGA-DK-A1AD-01 3 9786008 9786008 G T BRPF1 Missense_Mutation p.K912N 0.35 tolerated(0.07) probably_damaging(0.996) TCGA-DK-A1AD-01 4 110788968 110788968 C T LRIT3 Missense_Mutation p.P254L 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A1AD-01 4 119952786 119952786 G C SYNPO2 Missense_Mutation p.K952N 0.16 deleterious(0.03) probably_damaging(0.962) TCGA-DK-A1AD-01 4 122590871 122590871 C T ANXA5 Silent p.G263G 0.31 TCGA-DK-A1AD-01 4 126369781 126369781 C T FAT4 Missense_Mutation p.S2537F 0.28 benign(0.033) TCGA-DK-A1AD-01 4 126411829 126411829 G T FAT4 Nonsense_Mutation p.E4618* 0.32 TCGA-DK-A1AD-01 4 130030849 130030849 A G C4orf33 Intron 0.27 TCGA-DK-A1AD-01 4 13601779 13601779 C G BOD1L1 Missense_Mutation p.E2249Q 0.77 probably_damaging(0.97) TCGA-DK-A1AD-01 4 146067508 146067508 C T OTUD4 Missense_Mutation p.E380K 0.05 tolerated(0.22) probably_damaging(0.999) TCGA-DK-A1AD-01 4 169602510 169602510 A C PALLD Missense_Mutation p.E372A 0.06 deleterious(0.04) probably_damaging(0.913) TCGA-DK-A1AD-01 4 178363580 178363580 C T AGA 5'UTR 0.38 TCGA-DK-A1AD-01 4 186329148 186329156 CAATAGATC - UFSP2 In_Frame_Del p.G352_I354del 0.13 TCGA-DK-A1AD-01 4 40434800 40434800 G C RBM47 Missense_Mutation p.I470M 0.38 tolerated_low_confidence(0.3) benign(0.021) TCGA-DK-A1AD-01 4 49034620 49034620 G A CWH43 Missense_Mutation p.E516K 0.28 tolerated(0.4) benign(0.124) TCGA-DK-A1AD-01 4 56336930 56336930 A G CLOCK Missense_Mutation p.I131T 0.24 deleterious(0) probably_damaging(0.911) TCGA-DK-A1AD-01 4 5733227 5733227 G C EVC Missense_Mutation p.E154Q 0.42 deleterious(0.01) possibly_damaging(0.9) TCGA-DK-A1AD-01 4 73414511 73414511 G A ADAMTS3 Missense_Mutation p.A63V 0.24 deleterious(0.04) benign(0.117) TCGA-DK-A1AD-01 4 74702788 74702788 C G CXCL6 Missense_Mutation p.P73A 0.17 tolerated(0.07) probably_damaging(0.984) TCGA-DK-A1AD-01 4 75040360 75040360 C G MTHFD2L Missense_Mutation p.A94G 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-DK-A1AD-01 4 83349206 83349206 C T HNRNPDL Missense_Mutation p.E247K 0.23 deleterious(0.02) benign(0.317) TCGA-DK-A1AD-01 4 96761377 96761377 C A PDHA2 Missense_Mutation p.R26S 0.26 tolerated(0.65) benign(0.01) TCGA-DK-A1AD-01 5 114466549 114466549 A G TRIM36 Silent p.N524N 0.34 TCGA-DK-A1AD-01 5 134679035 134679035 G C H2AFY Missense_Mutation p.L290V 0.26 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AD-01 5 135283149 135283149 C G LECT2 Missense_Mutation p.K109N 0.42 tolerated(0.06) possibly_damaging(0.872) TCGA-DK-A1AD-01 5 140476609 140476609 G A PCDHB2 Silent p.G745G 0.32 TCGA-DK-A1AD-01 5 140559901 140559901 G A PCDHB8 Silent p.T762T 0.33 TCGA-DK-A1AD-01 5 149505034 149505034 T C PDGFRB Missense_Mutation p.E594G 0.52 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AD-01 5 158702181 158702183 ATT - UBLCP1 In_Frame_Del p.Y205del 0.32 TCGA-DK-A1AD-01 5 171766782 171766782 C T SH3PXD2B Missense_Mutation p.E443K 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 5 172750298 172750298 C T STC2 Missense_Mutation p.D144N 0.43 tolerated(1) benign(0.012) TCGA-DK-A1AD-01 5 33964006 33964006 G A SLC45A2 Silent p.L226L 0.16 TCGA-DK-A1AD-01 5 34998792 34998792 G A AGXT2 3'UTR 0.27 TCGA-DK-A1AD-01 5 42801506 42801506 G C CCDC152 3'UTR 0.17 TCGA-DK-A1AD-01 5 53839070 53839070 G A SNX18 Silent p.Q561Q 0.31 TCGA-DK-A1AD-01 5 72419557 72419557 C T TMEM171 Silent p.F119F 0.29 TCGA-DK-A1AD-01 5 7521004 7521004 G T ADCY2 Missense_Mutation p.V188F 0.39 tolerated(0.52) benign(0.004) TCGA-DK-A1AD-01 5 78671855 78671855 C T HOMER1 Missense_Mutation p.A348T 0.20 deleterious(0.02) benign(0.343) TCGA-DK-A1AD-01 6 107100544 107100544 A C QRSL1 Intron 0.87 TCGA-DK-A1AD-01 6 108365879 108365879 T C OSTM1 3'UTR 0.29 TCGA-DK-A1AD-01 6 144508325 144508325 C T STX11 Silent p.D187D 0.23 TCGA-DK-A1AD-01 6 144820449 144820449 G A UTRN Silent p.K1550K 0.18 TCGA-DK-A1AD-01 6 161032712 161032712 C A LPA Missense_Mutation p.G829C 0.37 tolerated(0.25) probably_damaging(0.999) TCGA-DK-A1AD-01 6 161054903 161054903 C A LPA Missense_Mutation p.G373C 0.40 deleterious(0) probably_damaging(0.99) TCGA-DK-A1AD-01 6 18212790 18212790 G A KDM1B Silent p.K414K 0.14 TCGA-DK-A1AD-01 6 27834978 27834978 G C HIST1H1B Silent p.L110L 0.20 TCGA-DK-A1AD-01 6 28889686 28889686 C T TRIM27 Missense_Mutation p.A167T 0.16 tolerated(0.34) possibly_damaging(0.811) TCGA-DK-A1AD-01 6 29364471 29364471 G A OR12D2 5'UTR 0.55 TCGA-DK-A1AD-01 6 30672275 30672275 C T MDC1 Missense_Mutation p.R1562K 0.57 tolerated(0.19) benign(0.017) TCGA-DK-A1AD-01 6 41533702 41533702 G C FOXP4 Missense_Mutation p.Q68H 0.26 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DK-A1AD-01 6 4937844 4937844 G A CDYL Missense_Mutation p.D332N 0.26 deleterious(0) possibly_damaging(0.708) TCGA-DK-A1AD-01 6 63990752 63990752 T C LGSN Missense_Mutation p.H235R 0.49 tolerated(0.16) benign(0.105) TCGA-DK-A1AD-01 6 70778319 70778319 C T COL19A1 Missense_Mutation p.S392F 0.12 deleterious(0.05) unknown(0) TCGA-DK-A1AD-01 6 90572752 90572752 A G CASP8AP2 RNA 0.55 TCGA-DK-A1AD-01 6 90581033 90581033 G C CASP8AP2 RNA 0.50 TCGA-DK-A1AD-01 7 100087130 100087130 G T NYAP1 Missense_Mutation p.D596Y 0.33 deleterious(0) possibly_damaging(0.456) TCGA-DK-A1AD-01 7 102016769 102016769 G A PRKRIP1 Intron 0.33 TCGA-DK-A1AD-01 7 120770316 120770316 G A CPED1 Missense_Mutation p.M515I 0.40 tolerated(0.11) benign(0.016) TCGA-DK-A1AD-01 7 127670603 127670603 G A LRRC4 Silent p.L31L 0.43 TCGA-DK-A1AD-01 7 128355645 128355645 G T FAM71F1 Silent p.A50A 0.41 TCGA-DK-A1AD-01 7 155093959 155093959 A C INSIG1 Splice_Site p.X180_splice 0.39 TCGA-DK-A1AD-01 7 27239717 27239717 G C HOXA13 5'UTR 0.33 TCGA-DK-A1AD-01 7 5567464 5567464 G A ACTB Missense_Mutation p.S348L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-DK-A1AD-01 7 57528875 57528875 T C ZNF716 Silent p.T236T 0.15 TCGA-DK-A1AD-01 7 72410394 72410395 AC - POM121 Frame_Shift_Del p.T219Nfs*21 0.24 TCGA-DK-A1AD-01 7 84671572 84671572 T C SEMA3D Missense_Mutation p.I297M 0.38 deleterious(0) probably_damaging(0.975) TCGA-DK-A1AD-01 7 99753312 99753312 C G C7orf43 Silent p.L459L 0.40 TCGA-DK-A1AD-01 8 110100398 110100398 C T TRHR Silent p.F219F 0.22 TCGA-DK-A1AD-01 8 117859890 117859890 A G RAD21 Missense_Mutation p.L582P 0.18 tolerated(0.29) probably_damaging(0.999) TCGA-DK-A1AD-01 8 117870623 117870623 C A RAD21 Missense_Mutation p.G150V 0.13 deleterious(0.01) benign(0.103) TCGA-DK-A1AD-01 8 119122781 119122781 G A EXT1 Nonsense_Mutation p.Q169* 0.53 TCGA-DK-A1AD-01 8 124267128 124267128 C T ZHX1 Silent p.R353R 0.53 TCGA-DK-A1AD-01 8 124371525 124371525 C G ATAD2 Missense_Mutation p.E440Q 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A1AD-01 8 124664012 124664012 G C KLHL38 Missense_Mutation p.I385M 0.19 deleterious(0) possibly_damaging(0.897) TCGA-DK-A1AD-01 8 126061284 126061284 G A KIAA0196 Silent p.N781N 0.16 TCGA-DK-A1AD-01 8 136594189 136594189 G T KHDRBS3 Missense_Mutation p.G227V 0.22 deleterious(0.01) possibly_damaging(0.559) TCGA-DK-A1AD-01 8 136594225 136594225 G T KHDRBS3 Missense_Mutation p.R239I 0.21 deleterious(0.01) possibly_damaging(0.625) TCGA-DK-A1AD-01 8 141549532 141549532 C - AGO2 Frame_Shift_Del p.A686Pfs*9 0.22 TCGA-DK-A1AD-01 8 144895029 144895029 G A SCRIB Silent p.L249L 0.12 TCGA-DK-A1AD-01 8 28196662 28196662 G C PNOC Missense_Mutation p.E78Q 0.60 deleterious(0.04) possibly_damaging(0.873) TCGA-DK-A1AD-01 8 30702296 30702296 G T TEX15 Missense_Mutation p.A1413E 0.49 tolerated(0.07) benign(0.058) TCGA-DK-A1AD-01 8 35584024 35584024 G T UNC5D Missense_Mutation p.G553V 0.48 deleterious(0) probably_damaging(0.99) TCGA-DK-A1AD-01 8 36662755 36662755 T C KCNU1 Silent p.P140P 0.58 TCGA-DK-A1AD-01 8 39607251 39607251 G C ADAM2 Missense_Mutation p.Q604E 0.28 tolerated(0.06) benign(0.065) TCGA-DK-A1AD-01 8 61653990 61653990 A T CHD7 5'UTR 0.20 TCGA-DK-A1AD-01 8 61765060 61765060 G C CHD7 Missense_Mutation p.W1966C 0.24 probably_damaging(0.997) TCGA-DK-A1AD-01 9 106894304 106894304 G C SMC2 Missense_Mutation p.M1002I 0.51 tolerated(0.2) benign(0.06) TCGA-DK-A1AD-01 9 131864786 131864786 G C CRAT Missense_Mutation p.Q175E 0.32 tolerated(0.23) benign(0.009) TCGA-DK-A1AD-01 9 21334596 21334596 T C KLHL9 Missense_Mutation p.Q88R 0.21 tolerated(0.54) benign(0.034) TCGA-DK-A1AD-01 9 26984496 26984496 G A IFT74 Splice_Site p.X135_splice 0.32 TCGA-DK-A1AD-01 9 34372097 34372097 C T KIAA1161 Missense_Mutation p.R248Q 0.16 tolerated(0.13) probably_damaging(0.964) TCGA-DK-A1AD-01 9 35044993 35044993 C G C9orf131 Silent p.L789L 0.37 TCGA-DK-A1AD-01 9 35697854 35697854 C T TLN1 Silent p.K2520K 0.16 TCGA-DK-A1AD-01 9 6589258 6589258 C G GLDC Missense_Mutation p.R506T 0.51 tolerated(0.59) benign(0.076) TCGA-DK-A1AD-01 9 67968407 67968407 G A ANKRD20A1 Missense_Mutation p.E656K 0.38 tolerated(0.35) benign(0) TCGA-DK-A1AD-01 9 71844146 71844146 T G TJP2 Silent p.P531P 0.53 TCGA-DK-A1AD-01 9 77377272 77377272 G A TRPM6 Missense_Mutation p.P1439S 0.26 tolerated_low_confidence(0.31) benign(0.004) TCGA-DK-A1AD-01 9 78784732 78784732 C T PCSK5 Nonsense_Mutation p.Q578* 0.35 TCGA-DK-A1AD-01 9 8518200 8518200 A T PTPRD Missense_Mutation p.N397K 0.24 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AD-01 9 90534857 90534857 G A SPATA31C1 RNA 0.18 TCGA-DK-A1AD-01 9 95477535 95477535 G A BICD2 Silent p.S823S 0.46 TCGA-DK-A1AD-01 9 98221997 98221997 C A PTCH1 Silent p.T924T 0.44 TCGA-DK-A1AD-01 X 101576752 101576752 C T NXF2 Silent p.H416H 0.21 TCGA-DK-A1AD-01 X 102754804 102754804 G C RAB40A 3'UTR 0.30 TCGA-DK-A1AD-01 X 123190029 123190029 G T STAG2 Silent p.L416L 0.41 TCGA-DK-A1AD-01 X 125686323 125686323 C T DCAF12L1 Missense_Mutation p.R90H 0.37 tolerated(0.16) benign(0.028) TCGA-DK-A1AD-01 X 138672035 138672035 C G MCF2 Missense_Mutation p.E853Q 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A1AD-01 X 153154021 153154021 G A LCA10 Silent p.T323T 0.80 TCGA-DK-A1AD-01 X 32662325 32662325 C T DMD Missense_Mutation p.E419K 0.84 benign(0.281) TCGA-DK-A1AD-01 X 34150089 34150089 G A FAM47A Silent p.L103L 0.87 TCGA-DK-A1AD-01 X 35959432 35959432 C G CXorf22 Nonsense_Mutation p.S145* 0.36 TCGA-DK-A1AD-01 X 49029745 49029745 G A PLP2 Missense_Mutation p.R87Q 0.38 tolerated(0.06) possibly_damaging(0.463) TCGA-DK-A1AD-01 X 50031856 50031856 A G CCNB3 Missense_Mutation p.K58R 0.86 tolerated(0.07) benign(0.251) TCGA-DK-A1AD-01 X 73962682 73962682 C G KIAA2022 Missense_Mutation p.L570F 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AD-01 X 90691282 90691282 G A PABPC5 Missense_Mutation p.G236R 0.35 deleterious(0.01) probably_damaging(1) TCGA-DK-A1AD-01 X 90691283 90691283 G T PABPC5 Missense_Mutation p.G236V 0.35 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 10 108439408 108439408 T C SORCS1 Missense_Mutation p.S549G 0.50 tolerated(1) benign(0.004) TCGA-DK-A1AE-01 10 15326047 15326047 G A FAM171A1 Missense_Mutation p.A52V 0.42 tolerated(0.1) benign(0.088) TCGA-DK-A1AE-01 10 29752434 29752434 G C SVIL Silent p.L2088L 0.23 TCGA-DK-A1AE-01 10 46959907 46959907 C T SYT15 3'Flank 0.20 TCGA-DK-A1AE-01 10 68381455 68381455 G A CTNNA3 Missense_Mutation p.P457S 0.30 deleterious(0) benign(0.001) TCGA-DK-A1AE-01 10 70048339 70048339 G C PBLD Missense_Mutation p.L198V 0.48 tolerated(1) benign(0.006) TCGA-DK-A1AE-01 10 70190242 70190242 G A DNA2 Missense_Mutation p.S806L 0.33 deleterious(0.02) benign(0.042) TCGA-DK-A1AE-01 10 90045105 90045105 T C RNLS 3'UTR 0.39 TCGA-DK-A1AE-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.38 TCGA-DK-A1AE-01 10 98155634 98155634 C G TLL2 Missense_Mutation p.E510Q 0.40 tolerated(0.06) possibly_damaging(0.877) TCGA-DK-A1AE-01 10 99527601 99527601 G T SFRP5 Silent p.I208I 0.32 TCGA-DK-A1AE-01 11 117164662 117164662 G C BACE1 Silent p.L210L 0.43 TCGA-DK-A1AE-01 11 121028601 121028601 C T TECTA Missense_Mutation p.R1453C 0.05 tolerated(0.06) possibly_damaging(0.873) TCGA-DK-A1AE-01 11 31455050 31455050 C A IMMP1L Missense_Mutation p.G130V 0.39 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AE-01 11 3249613 3249613 C T MRGPRE Silent p.L138L 0.44 TCGA-DK-A1AE-01 11 4870194 4870194 A T OR51S1 Missense_Mutation p.V82D 0.24 deleterious(0) benign(0.259) TCGA-DK-A1AE-01 11 65046238 65046238 C T POLA2 Nonsense_Mutation p.R167* 0.28 TCGA-DK-A1AE-01 11 82877720 82877720 C T PCF11 Missense_Mutation p.A594V 0.33 tolerated(0.38) benign(0.011) TCGA-DK-A1AE-01 12 10223773 10223773 C T CLEC1A 3'UTR 0.46 TCGA-DK-A1AE-01 12 11061864 11061864 C G TAS2R13 Missense_Mutation p.V12L 0.31 tolerated(1) benign(0.004) TCGA-DK-A1AE-01 12 133196152 133196152 C A P2RX2 Missense_Mutation p.P101T 0.32 deleterious(0) probably_damaging(0.93) TCGA-DK-A1AE-01 12 3128321 3128321 C T TEAD4 Missense_Mutation p.P190S 0.37 tolerated(0.36) benign(0.007) TCGA-DK-A1AE-01 12 48866717 48866717 C T ANP32D Silent p.L90L 0.39 TCGA-DK-A1AE-01 12 49425078 49425078 C G KMT2D Missense_Mutation p.K4470N 0.40 unknown(0) TCGA-DK-A1AE-01 12 49427906 49427906 C A KMT2D Nonsense_Mutation p.E3562* 0.40 TCGA-DK-A1AE-01 12 49438595 49438595 G C KMT2D Nonsense_Mutation p.S1632* 0.41 TCGA-DK-A1AE-01 12 54367330 54367330 G A HOXC11 Missense_Mutation p.R102Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AE-01 12 56567574 56567574 C T SMARCC2 Missense_Mutation p.R519Q 0.37 deleterious(0.01) benign(0.238) TCGA-DK-A1AE-01 12 79611344 79611344 C A SYT1 Silent p.V15V 0.44 TCGA-DK-A1AE-01 13 46539484 46539484 C T ZC3H13 Missense_Mutation p.E1469K 0.06 unknown(0) TCGA-DK-A1AE-01 14 65203568 65203568 C T PLEKHG3 Intron 0.31 TCGA-DK-A1AE-01 14 75745827 75745827 G A FOS Splice_Site p.X47_splice 0.39 TCGA-DK-A1AE-01 14 99866554 99866554 C T SETD3 Missense_Mutation p.R407K 0.35 tolerated(1) benign(0.246) TCGA-DK-A1AE-01 15 100673517 100673517 G A ADAMTS17 Silent p.L493L 0.24 TCGA-DK-A1AE-01 15 20642677 20642677 G A HERC2P3 RNA 0.21 TCGA-DK-A1AE-01 15 21071398 21071398 G A POTEB2 Silent p.C71C 0.18 TCGA-DK-A1AE-01 15 24921378 24921378 A C NPAP1 Missense_Mutation p.M122L 0.33 tolerated(0.11) benign(0) TCGA-DK-A1AE-01 15 49926748 49926748 C A DTWD1 Missense_Mutation p.P142T 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AE-01 15 51975502 51975502 G C SCG3 Missense_Mutation p.E90Q 0.40 deleterious_low_confidence(0.03) benign(0.25) TCGA-DK-A1AE-01 15 65918024 65918025 - T SLC24A1 Frame_Shift_Ins p.L537Sfs*25 0.30 TCGA-DK-A1AE-01 15 73624589 73624589 G T HCN4 Silent p.I418I 0.42 TCGA-DK-A1AE-01 15 75248520 75248520 G A RPP25 Silent p.L135L 0.42 TCGA-DK-A1AE-01 15 93563313 93563313 G T CHD2 Missense_Mutation p.D1660Y 0.38 deleterious(0.01) benign(0.41) TCGA-DK-A1AE-01 16 1476162 1476162 G T C16orf91 Missense_Mutation p.A154D 0.13 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-DK-A1AE-01 16 30723437 30723437 G C SRCAP Missense_Mutation p.E592Q 0.33 unknown(0) TCGA-DK-A1AE-01 16 30724116 30724116 G A SRCAP Missense_Mutation p.E704K 0.38 unknown(0) TCGA-DK-A1AE-01 16 30724634 30724634 G C SRCAP Missense_Mutation p.D746H 0.42 unknown(0) TCGA-DK-A1AE-01 16 4411441 4411441 C T CORO7 Silent p.T536T 0.27 TCGA-DK-A1AE-01 16 48177903 48177903 C T ABCC12 Missense_Mutation p.V65M 0.36 tolerated(0.25) benign(0.01) TCGA-DK-A1AE-01 16 58619310 58619318 TACCCCTCC GACCCAA CNOT1 Frame_Shift_Del p.G244Lfs*4 0.24 TCGA-DK-A1AE-01 16 89261395 89261395 G A CDH15 Silent p.E759E 0.46 TCGA-DK-A1AE-01 17 38178227 38178227 G T MED24 Silent p.A868A 0.37 TCGA-DK-A1AE-01 17 41246211 41246211 C G BRCA1 Missense_Mutation p.R446T 0.40 deleterious(0.02) possibly_damaging(0.835) TCGA-DK-A1AE-01 17 62020234 62020234 C T SCN4A Missense_Mutation p.V1414I 0.26 tolerated(0.57) benign(0.012) TCGA-DK-A1AE-01 17 72843023 72843023 A C GRIN2C Missense_Mutation p.F680V 0.30 deleterious(0.02) probably_damaging(0.935) TCGA-DK-A1AE-01 17 73235616 73235616 G A GGA3 Silent p.L540L 0.24 TCGA-DK-A1AE-01 17 73269536 73269536 C T SLC25A19 Missense_Mutation p.R320H 0.20 deleterious_low_confidence(0.01) benign(0.284) TCGA-DK-A1AE-01 17 78079575 78079575 G T GAA Nonsense_Mutation p.E192* 0.21 TCGA-DK-A1AE-01 17 7976982 7976982 G T ALOX12B Missense_Mutation p.T583K 0.34 deleterious(0.02) benign(0.079) TCGA-DK-A1AE-01 18 72913894 72913894 C A ZADH2 Missense_Mutation p.C204F 0.27 deleterious(0) probably_damaging(0.985) TCGA-DK-A1AE-01 19 11350372 11350372 C T C19orf80 Missense_Mutation p.S20L 0.40 tolerated(0.49) benign(0.006) TCGA-DK-A1AE-01 19 17186343 17186343 C T HAUS8 5'UTR 0.36 TCGA-DK-A1AE-01 19 36223287 36223287 C T KMT2B Missense_Mutation p.S1946L 0.47 possibly_damaging(0.879) TCGA-DK-A1AE-01 19 42752674 42752674 C A ERF Silent p.V530V 0.39 TCGA-DK-A1AE-01 19 44662014 44662014 G C ZNF234 Missense_Mutation p.Q615H 0.41 tolerated(0.07) probably_damaging(0.99) TCGA-DK-A1AE-01 19 4523684 4523684 C T PLIN5 Silent p.Q416Q 0.44 TCGA-DK-A1AE-01 19 46973800 46973800 C G PNMAL1 Missense_Mutation p.D165H 0.39 deleterious(0) probably_damaging(0.934) TCGA-DK-A1AE-01 19 50978631 50978631 A G FAM71E1 Silent p.L148L 0.28 TCGA-DK-A1AE-01 19 55220844 55220844 C T AC098784.2 3'Flank 0.51 TCGA-DK-A1AE-01 1 102302527 102302527 C T OLFM3 Missense_Mutation p.D42N 0.47 tolerated(0.13) probably_damaging(0.997) TCGA-DK-A1AE-01 1 13475073 13475073 C T PRAMEF18 Silent p.Q352Q 0.37 TCGA-DK-A1AE-01 1 144864168 144864168 T G PDE4DIP Missense_Mutation p.E1976A 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-DK-A1AE-01 1 144864203 144864203 C G PDE4DIP Missense_Mutation p.L1964F 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-DK-A1AE-01 1 175324643 175324643 C T TNR Missense_Mutation p.R1082H 0.35 tolerated(0.44) probably_damaging(0.988) TCGA-DK-A1AE-01 1 196434452 196434452 T A KCNT2 Silent p.I203I 0.06 TCGA-DK-A1AE-01 1 220440395 220440395 G A RAB3GAP2 Intron 0.34 TCGA-DK-A1AE-01 1 22213705 22213705 C A HSPG2 Intron 0.36 TCGA-DK-A1AE-01 1 244615145 244615145 G C ADSS 5'UTR 0.50 TCGA-DK-A1AE-01 1 27105930 27105931 - G ARID1A Frame_Shift_Ins p.D1850Gfs*4 0.43 TCGA-DK-A1AE-01 1 3407103 3407103 C T MEGF6 Missense_Mutation p.A1539T 0.34 tolerated_low_confidence(0.19) benign(0.004) TCGA-DK-A1AE-01 1 82456786 82456786 G C LPHN2 Missense_Mutation p.G1390A 0.50 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-DK-A1AE-01 1 89849217 89849217 G C GBP6 Missense_Mutation p.E458Q 0.50 deleterious(0.02) benign(0.395) TCGA-DK-A1AE-01 1 9164616 9164616 G C GPR157 Silent p.L290L 0.30 TCGA-DK-A1AE-01 21 30365173 30365173 C A LTN1 Missense_Mutation p.R31L 0.33 tolerated_low_confidence(0.97) benign(0.002) TCGA-DK-A1AE-01 21 34823156 34823156 T C TMEM50B Missense_Mutation p.K149R 0.44 deleterious(0.04) benign(0.246) TCGA-DK-A1AE-01 22 17600373 17600373 G A CECR6 Nonsense_Mutation p.Q549* 0.30 TCGA-DK-A1AE-01 22 21141474 21141474 G C SERPIND1 3'UTR 0.50 TCGA-DK-A1AE-01 22 30822725 30822725 G A MTFP1 Missense_Mutation p.E30K 0.38 deleterious(0) probably_damaging(0.994) TCGA-DK-A1AE-01 22 35684398 35684398 G A HMGXB4 Missense_Mutation p.E546K 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-DK-A1AE-01 22 39132217 39132217 C G GTPBP1 3'Flank 0.37 TCGA-DK-A1AE-01 22 45601515 45601515 G T KIAA0930 Missense_Mutation p.S142Y 0.34 deleterious(0.02) benign(0.391) TCGA-DK-A1AE-01 2 109103046 109103046 C T GCC2 Missense_Mutation p.T1291M 0.47 tolerated(0.05) possibly_damaging(0.828) TCGA-DK-A1AE-01 2 135011882 135011882 G C MGAT5 5'UTR 0.50 TCGA-DK-A1AE-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.34 deleterious(0.02) benign(0.318) TCGA-DK-A1AE-01 2 179412782 179412782 C T TTN Missense_Mutation p.D31191N 0.32 TCGA-DK-A1AE-01 2 179412881 179412881 C G TTN Missense_Mutation p.D31158H 0.35 TCGA-DK-A1AE-01 2 179412928 179412928 C T TTN Missense_Mutation p.G31142D 0.35 TCGA-DK-A1AE-01 2 179413248 179413248 C T TTN Silent p.L31035L 0.36 TCGA-DK-A1AE-01 2 179413427 179413427 C T TTN Missense_Mutation p.D30976N 0.35 TCGA-DK-A1AE-01 2 198267484 198267484 G A SF3B1 Missense_Mutation p.R625C 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 2 201756682 201756682 G A NIF3L1 Missense_Mutation p.V6I 0.36 tolerated_low_confidence(0.86) benign(0.003) TCGA-DK-A1AE-01 2 219360635 219360635 C A USP37 Silent p.L440L 0.36 TCGA-DK-A1AE-01 2 219423397 219423397 C T USP37 5'UTR 0.43 TCGA-DK-A1AE-01 2 219503085 219503085 G C ZNF142 Missense_Mutation p.P1681A 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.539) TCGA-DK-A1AE-01 2 219503172 219503172 G A ZNF142 Nonsense_Mutation p.Q1652* 0.32 TCGA-DK-A1AE-01 2 220439578 220439578 C A INHA Missense_Mutation p.A144D 0.45 deleterious(0.01) benign(0.288) TCGA-DK-A1AE-01 2 225653783 225653783 C G DOCK10 Missense_Mutation p.E1806Q 0.22 deleterious(0.01) possibly_damaging(0.764) TCGA-DK-A1AE-01 2 231113635 231113635 G A SP140 Missense_Mutation p.E310K 0.29 tolerated(0.23) benign(0.177) TCGA-DK-A1AE-01 2 231947666 231947666 G A PSMD1 Missense_Mutation p.D495N 0.39 deleterious(0.02) benign(0.065) TCGA-DK-A1AE-01 2 27898484 27898484 G A SLC4A1AP Silent p.L477L 0.32 TCGA-DK-A1AE-01 2 56108800 56108800 G T EFEMP1 Missense_Mutation p.S196Y 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 2 62081196 62081196 G C FAM161A 5'Flank 0.37 TCGA-DK-A1AE-01 2 85982034 85982034 C G ATOH8 Missense_Mutation p.T241R 0.41 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AE-01 2 99858848 99858848 G T LYG2 Missense_Mutation p.F206L 0.36 deleterious(0.05) benign(0.017) TCGA-DK-A1AE-01 3 129195584 129195584 T A IFT122 Missense_Mutation p.Y414N 0.38 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AE-01 3 183689484 183689484 G A ABCC5 Missense_Mutation p.A543V 0.33 tolerated(0.21) benign(0.008) TCGA-DK-A1AE-01 3 192516318 192516318 C G MB21D2 Missense_Mutation p.G445R 0.25 tolerated(0.17) benign(0.216) TCGA-DK-A1AE-01 3 3144421 3144421 G C IL5RA Missense_Mutation p.Q56E 0.41 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AE-01 3 38739749 38739749 G A SCN10A Silent p.L1654L 0.35 TCGA-DK-A1AE-01 3 93646147 93646147 C T PROS1 Missense_Mutation p.E61K 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 4 144359278 144359278 G A GAB1 Missense_Mutation p.M240I 0.34 tolerated(0.39) benign(0.001) TCGA-DK-A1AE-01 4 155530854 155530854 C T FGG Silent p.L198L 0.31 TCGA-DK-A1AE-01 4 1803629 1803629 C T FGFR3 Silent p.S269S 0.20 TCGA-DK-A1AE-01 4 186111887 186111887 G C KIAA1430 Missense_Mutation p.S155C 0.32 deleterious(0.02) possibly_damaging(0.599) TCGA-DK-A1AE-01 4 23814419 23814419 C T PPARGC1A Missense_Mutation p.R657Q 0.40 tolerated(0.05) unknown(0) TCGA-DK-A1AE-01 4 23815883 23815883 C G PPARGC1A Missense_Mutation p.R408T 0.34 tolerated(0.42) possibly_damaging(0.881) TCGA-DK-A1AE-01 4 76882456 76882456 T C SDAD1 Missense_Mutation p.N396S 0.43 deleterious(0.02) possibly_damaging(0.555) TCGA-DK-A1AE-01 5 121412846 121412846 G A LOX Intron 0.31 TCGA-DK-A1AE-01 5 139215325 139215325 C G PSD2 Missense_Mutation p.I459M 0.37 deleterious(0) probably_damaging(0.988) TCGA-DK-A1AE-01 5 140482583 140482583 G A PCDHB3 Missense_Mutation p.E784K 0.34 tolerated_low_confidence(0.17) benign(0.004) TCGA-DK-A1AE-01 5 176709524 176709524 G T NSD1 Missense_Mutation p.R1984L 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 5 74865308 74865308 G C POLK Missense_Mutation p.M133I 0.36 deleterious(0.02) benign(0.017) TCGA-DK-A1AE-01 6 138192400 138192400 G C TNFAIP3 Missense_Mutation p.L12F 0.39 tolerated(0.29) benign(0.011) TCGA-DK-A1AE-01 6 32944408 32944408 C T BRD2 Missense_Mutation p.P299S 0.37 tolerated(0.5) benign(0.134) TCGA-DK-A1AE-01 6 36067964 36067964 G A MAPK14 Splice_Site p.X228_splice 0.38 TCGA-DK-A1AE-01 6 44081613 44081613 G A MRPL14 Silent p.S135S 0.41 TCGA-DK-A1AE-01 6 90428326 90428326 C T MDN1 Nonsense_Mutation p.W2114* 0.33 TCGA-DK-A1AE-01 7 123302716 123302716 G A LMOD2 Missense_Mutation p.R359H 0.42 deleterious(0) probably_damaging(0.987) TCGA-DK-A1AE-01 7 151873966 151873967 - AG KMT2C Frame_Shift_Ins p.A2858Lfs*6 0.28 TCGA-DK-A1AE-01 7 157060438 157060438 G C UBE3C Missense_Mutation p.E1081Q 0.45 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 7 76142398 76142398 C T UPK3B Intron 0.38 TCGA-DK-A1AE-01 7 77797280 77797280 C T MAGI2 Missense_Mutation p.R850H 0.35 deleterious(0) probably_damaging(1) TCGA-DK-A1AE-01 7 99722457 99722457 A G CNPY4 Silent p.G231G 0.41 TCGA-DK-A1AE-01 8 103277452 103277452 C G UBR5 Missense_Mutation p.D2493H 0.66 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A1AE-01 8 103564035 103564035 G T ODF1 Missense_Mutation p.C27F 0.21 tolerated_low_confidence(0.17) probably_damaging(0.962) TCGA-DK-A1AE-01 8 103851004 103851004 C T AZIN1 Silent p.L139L 0.21 TCGA-DK-A1AE-01 8 113694715 113694715 A C CSMD3 Missense_Mutation p.M878R 0.32 tolerated(0.2) benign(0.088) TCGA-DK-A1AE-01 8 120807793 120807793 C A TAF2 Missense_Mutation p.E390D 0.16 deleterious(0.03) possibly_damaging(0.633) TCGA-DK-A1AE-01 8 143565371 143565371 G C BAI1 Missense_Mutation p.E722Q 0.16 tolerated(0.07) benign(0) TCGA-DK-A1AE-01 8 146108082 146108082 C G ZNF250 Silent p.L167L 0.23 TCGA-DK-A1AE-01 8 77767336 77767336 T C ZFHX4 Missense_Mutation p.Y2727H 0.22 probably_damaging(0.994) TCGA-DK-A1AE-01 9 101984145 101984145 G A ALG2 Missense_Mutation p.S11L 0.39 tolerated_low_confidence(0.29) benign(0) TCGA-DK-A1AE-01 9 115600917 115600917 C T SNX30 Silent p.D318D 0.27 TCGA-DK-A1AE-01 9 35685657 35685657 C T TPM2 Missense_Mutation p.D121N 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A1AE-01 X 118220587 118220587 A G KIAA1210 Missense_Mutation p.S1536P 0.77 tolerated(0.21) possibly_damaging(0.534) TCGA-DK-A1AE-01 X 66765006 66765006 G A AR Silent p.G6G 0.82 TCGA-DK-A1AF-01 10 101978578 101978578 C T CHUK Missense_Mutation p.E232K 0.08 tolerated(0.38) benign(0.324) TCGA-DK-A1AF-01 10 89516664 89516664 C G ATAD1 Missense_Mutation p.D283H 0.06 deleterious(0.04) possibly_damaging(0.863) TCGA-DK-A1AF-01 10 95147619 95147619 G A MYOF Missense_Mutation p.L545F 0.04 deleterious(0) possibly_damaging(0.883) TCGA-DK-A1AF-01 10 99025847 99025847 G C ARHGAP19 Missense_Mutation p.S31C 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-DK-A1AF-01 11 108043955 108043955 C T NPAT Missense_Mutation p.E586K 0.05 tolerated(0.69) benign(0.018) TCGA-DK-A1AF-01 11 108382830 108382830 C A EXPH5 Missense_Mutation p.G1135V 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A1AF-01 11 33053051 33053051 G C DEPDC7 Missense_Mutation p.D304H 0.09 tolerated(0.05) benign(0.022) TCGA-DK-A1AF-01 11 33053080 33053080 G A DEPDC7 Silent p.R313R 0.06 TCGA-DK-A1AF-01 11 33054239 33054239 G C DEPDC7 Missense_Mutation p.R388T 0.13 deleterious(0) probably_damaging(0.954) TCGA-DK-A1AF-01 11 33054490 33054490 G A DEPDC7 Missense_Mutation p.G440E 0.13 tolerated(0.05) possibly_damaging(0.814) TCGA-DK-A1AF-01 11 34139781 34139781 C G NAT10 Silent p.L204L 0.14 TCGA-DK-A1AF-01 11 4608745 4608745 C T OR52I2 Missense_Mutation p.L235F 0.06 tolerated(0.32) benign(0.367) TCGA-DK-A1AF-01 11 74056622 74056622 C T PGM2L1 Silent p.K370K 0.04 TCGA-DK-A1AF-01 11 75298367 75298367 G C MAP6 Missense_Mutation p.Q727E 0.10 deleterious_low_confidence(0.01) benign(0.057) TCGA-DK-A1AF-01 11 76507357 76507357 C T TSKU Missense_Mutation p.H233Y 0.06 tolerated(0.28) possibly_damaging(0.66) TCGA-DK-A1AF-01 12 10962188 10962188 C G TAS2R9 Missense_Mutation p.E163Q 0.11 tolerated(0.38) possibly_damaging(0.589) TCGA-DK-A1AF-01 12 124362399 124362399 C T DNAH10 Silent p.F2654F 0.06 TCGA-DK-A1AF-01 12 22208488 22208488 C G CMAS Missense_Mutation p.S168C 0.05 deleterious(0.01) possibly_damaging(0.79) TCGA-DK-A1AF-01 12 33592482 33592482 C G SYT10 5'UTR 0.08 TCGA-DK-A1AF-01 12 3392335 3392335 G T TSPAN9 3'UTR 0.13 TCGA-DK-A1AF-01 12 52309201 52309201 G A ACVRL1 Missense_Mutation p.G322D 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AF-01 12 52404711 52404711 G C GRASP Missense_Mutation p.E115Q 0.07 deleterious(0) possibly_damaging(0.823) TCGA-DK-A1AF-01 12 53662888 53662888 G A ESPL1 Silent p.L54L 0.06 TCGA-DK-A1AF-01 12 54894397 54894397 C T NCKAP1L Silent p.V98V 0.06 TCGA-DK-A1AF-01 12 54912718 54912718 G C NCKAP1L Missense_Mutation p.E481Q 0.09 deleterious(0) benign(0.116) TCGA-DK-A1AF-01 12 64587993 64587993 C T C12orf66 Missense_Mutation p.E323K 0.07 deleterious(0) probably_damaging(0.962) TCGA-DK-A1AF-01 12 64588249 64588249 C T C12orf66 Silent p.K237K 0.11 TCGA-DK-A1AF-01 12 9020914 9020914 C A A2ML1 Missense_Mutation p.P1341Q 0.06 tolerated(0.62) benign(0.005) TCGA-DK-A1AF-01 13 96409943 96409943 C T DNAJC3 Nonsense_Mutation p.Q147* 0.09 TCGA-DK-A1AF-01 14 102391704 102391704 C G PPP2R5C 3'UTR 0.20 TCGA-DK-A1AF-01 14 105639498 105639498 C T NUDT14 Missense_Mutation p.E177K 0.11 deleterious(0) possibly_damaging(0.762) TCGA-DK-A1AF-01 14 39716635 39716635 C T MIA2 Missense_Mutation p.S286L 0.07 tolerated(0.08) benign(0.081) TCGA-DK-A1AF-01 14 45658433 45658433 G C FANCM Silent p.L1736L 0.08 TCGA-DK-A1AF-01 14 50118050 50118050 T C POLE2 Silent p.L419L 0.07 TCGA-DK-A1AF-01 14 65198166 65198166 C T PLEKHG3 Missense_Mutation p.R257C 0.07 deleterious(0) possibly_damaging(0.832) TCGA-DK-A1AF-01 15 102304859 102304859 G A DNM1P47 RNA 0.19 TCGA-DK-A1AF-01 15 49076285 49076285 C T CEP152 Silent p.V402V 0.07 TCGA-DK-A1AF-01 15 69018260 69018260 C T CORO2B Missense_Mutation p.R464W 0.07 deleterious(0) possibly_damaging(0.881) TCGA-DK-A1AF-01 15 89758326 89758326 C G RLBP1 Missense_Mutation p.E164Q 0.05 tolerated(0.14) possibly_damaging(0.843) TCGA-DK-A1AF-01 16 4882060 4882060 C T GLYR1 Missense_Mutation p.E153K 0.05 tolerated(0.46) benign(0.001) TCGA-DK-A1AF-01 16 75654613 75654613 G A ADAT1 Missense_Mutation p.H29Y 0.07 deleterious(0) benign(0.259) TCGA-DK-A1AF-01 16 75669620 75669620 G T KARS Silent p.I279I 0.09 TCGA-DK-A1AF-01 16 75669626 75669626 C G KARS Missense_Mutation p.K277N 0.09 tolerated(0.06) benign(0.294) TCGA-DK-A1AF-01 17 34344932 34344932 C T CCL23 Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AF-01 17 45912735 45912735 T C LRRC46 Missense_Mutation p.I81T 0.09 deleterious(0) probably_damaging(0.993) TCGA-DK-A1AF-01 17 45913412 45913412 G A LRRC46 Silent p.Q132Q 0.09 TCGA-DK-A1AF-01 17 57058003 57058003 C A PPM1E Missense_Mutation p.P627T 0.03 deleterious_low_confidence(0.02) benign(0.069) TCGA-DK-A1AF-01 17 60028354 60028354 C G MED13 Missense_Mutation p.Q2041H 0.07 deleterious(0.02) possibly_damaging(0.452) TCGA-DK-A1AF-01 17 65162678 65162678 T A HELZ Missense_Mutation p.H604L 0.04 deleterious(0) probably_damaging(0.996) TCGA-DK-A1AF-01 17 7256592 7256592 C G KCTD11 Missense_Mutation p.H111D 0.09 tolerated(0.24) benign(0.253) TCGA-DK-A1AF-01 17 78172558 78172558 G A CARD14 Intron 0.07 TCGA-DK-A1AF-01 17 79660899 79660899 G T HGS Splice_Site p.X281_splice 0.09 TCGA-DK-A1AF-01 17 8168266 8168266 G A PFAS Silent p.L701L 0.25 TCGA-DK-A1AF-01 18 29617078 29617078 G T RNF125 Splice_Site p.X55_splice 0.06 TCGA-DK-A1AF-01 19 10662853 10662853 C T ATG4D Intron 0.06 TCGA-DK-A1AF-01 19 11916920 11916920 C T ZNF491 Missense_Mutation p.S51F 0.06 deleterious(0.04) benign(0.143) TCGA-DK-A1AF-01 19 19021838 19021838 C T COPE Missense_Mutation p.A78T 0.05 tolerated(0.35) benign(0.006) TCGA-DK-A1AF-01 19 21720336 21720336 C G ZNF429 Nonsense_Mutation p.S494* 0.13 TCGA-DK-A1AF-01 19 21720683 21720683 C G ZNF429 Missense_Mutation p.Q610E 0.07 tolerated(0.6) benign(0.005) TCGA-DK-A1AF-01 19 42754675 42754675 G C ERF Missense_Mutation p.P22R 0.10 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AF-01 19 52496411 52496411 T C ZNF615 Missense_Mutation p.I651V 0.05 tolerated(0.09) benign(0.034) TCGA-DK-A1AF-01 19 55420628 55420628 C T NCR1 Missense_Mutation p.S127L 0.05 deleterious(0.05) benign(0.028) TCGA-DK-A1AF-01 19 7584139 7584139 C T CTD-2207O23.12 Nonsense_Mutation p.Q37* 0.07 TCGA-DK-A1AF-01 19 7584339 7584339 C A ZNF358 Missense_Mutation p.L71M 0.08 deleterious(0.04) probably_damaging(0.994) TCGA-DK-A1AF-01 1 109351556 109351556 G C STXBP3 3'UTR 0.07 TCGA-DK-A1AF-01 1 12921316 12921316 C G PRAMEF2 Missense_Mutation p.I369M 0.03 deleterious(0) possibly_damaging(0.819) TCGA-DK-A1AF-01 1 151238867 151238867 G C PSMD4 Missense_Mutation p.E283Q 0.11 deleterious(0.01) probably_damaging(1) TCGA-DK-A1AF-01 1 152275618 152275618 G C FLG Missense_Mutation p.S3915C 0.05 unknown(0) TCGA-DK-A1AF-01 1 156507074 156507074 G A IQGAP3 Silent p.S1107S 0.07 TCGA-DK-A1AF-01 1 164761814 164761814 G A PBX1 Missense_Mutation p.V117M 0.12 deleterious(0.05) probably_damaging(0.982) TCGA-DK-A1AF-01 1 205819093 205819093 C T PM20D1 Silent p.A36A 0.08 TCGA-DK-A1AF-01 1 209789846 209789846 C T LAMB3 Missense_Mutation p.E1118K 0.05 deleterious(0.05) benign(0.17) TCGA-DK-A1AF-01 1 215256745 215256745 C T KCNK2 Missense_Mutation p.S6L 0.10 deleterious_low_confidence(0.01) benign(0.001) TCGA-DK-A1AF-01 1 39878410 39878410 G C KIAA0754 Missense_Mutation p.E689Q 0.11 unknown(0) TCGA-DK-A1AF-01 1 57409489 57409489 G C C8B Missense_Mutation p.L372V 0.05 deleterious(0.02) benign(0.238) TCGA-DK-A1AF-01 1 70504020 70504020 G A LRRC7 Missense_Mutation p.R800K 0.06 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-DK-A1AF-01 20 18541419 18541419 G A SEC23B 3'UTR 0.05 TCGA-DK-A1AF-01 22 39141785 39141785 C T SUN2 Silent p.Q260Q 0.09 TCGA-DK-A1AF-01 2 120197742 120197742 G A SCTR Missense_Mutation p.A425V 0.14 tolerated(0.32) benign(0.043) TCGA-DK-A1AF-01 2 131799455 131799455 A C ARHGEF4 Missense_Mutation p.K469Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AF-01 2 135739074 135739074 G A MAP3K19 Silent p.L1079L 0.03 TCGA-DK-A1AF-01 2 141641540 141641540 C T LRP1B Missense_Mutation p.G1339S 0.09 benign(0.007) TCGA-DK-A1AF-01 2 162751249 162751249 G C SLC4A10 Missense_Mutation p.E419Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AF-01 2 170416964 170416964 G A FASTKD1 Missense_Mutation p.H302Y 0.07 tolerated(0.13) benign(0.007) TCGA-DK-A1AF-01 2 170417266 170417266 G T FASTKD1 Missense_Mutation p.S201Y 0.07 deleterious(0.03) probably_damaging(0.982) TCGA-DK-A1AF-01 2 172195788 172195788 G A METTL8 Missense_Mutation p.S171F 0.05 tolerated(0.08) benign(0.031) TCGA-DK-A1AF-01 2 208841675 208841675 C A PLEKHM3 Missense_Mutation p.D416Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AF-01 2 210560016 210560016 C T MAP2 Missense_Mutation p.A1041V 0.05 deleterious_low_confidence(0) benign(0.008) TCGA-DK-A1AF-01 2 228883236 228883236 G T SPHKAP Missense_Mutation p.H778Q 0.06 tolerated(0.28) benign(0.009) TCGA-DK-A1AF-01 2 64114722 64114722 G A UGP2 Missense_Mutation p.E420K 0.06 tolerated(0.16) benign(0.005) TCGA-DK-A1AF-01 2 64208891 64208891 G A VPS54 Silent p.F89F 0.07 TCGA-DK-A1AF-01 2 74709847 74709847 G A CCDC142 Missense_Mutation p.R40C 0.11 tolerated_low_confidence(0.1) possibly_damaging(0.649) TCGA-DK-A1AF-01 2 74710279 74710279 G T CCDC142 5'Flank 0.11 TCGA-DK-A1AF-01 2 88828645 88828645 G C TEX37 Missense_Mutation p.D66H 0.08 deleterious_low_confidence(0) possibly_damaging(0.574) TCGA-DK-A1AF-01 3 110845149 110845149 C T PVRL3 Nonsense_Mutation p.Q346* 0.07 TCGA-DK-A1AF-01 3 125726027 125726027 C T SLC41A3 Silent p.L432L 0.07 TCGA-DK-A1AF-01 3 132166277 132166277 C T DNAJC13 Missense_Mutation p.S86F 0.06 deleterious(0) probably_damaging(0.968) TCGA-DK-A1AF-01 3 142840871 142840871 A G CHST2 Missense_Mutation p.T405A 0.05 tolerated(0.17) possibly_damaging(0.542) TCGA-DK-A1AF-01 3 182853541 182853541 G C LAMP3 Missense_Mutation p.Q361E 0.08 deleterious(0) probably_damaging(0.958) TCGA-DK-A1AF-01 3 186383944 186383944 C T HRG Nonsense_Mutation p.R42* 0.10 TCGA-DK-A1AF-01 3 195593873 195593873 G A TNK2 Silent p.F1047F 0.12 TCGA-DK-A1AF-01 3 197665561 197665561 C T IQCG Missense_Mutation p.E125K 0.06 tolerated(1) benign(0) TCGA-DK-A1AF-01 3 44763393 44763393 C G ZNF502 Missense_Mutation p.Q362E 0.09 deleterious(0.05) benign(0.221) TCGA-DK-A1AF-01 3 46783844 46783844 G A PRSS45 Missense_Mutation p.S228F 0.04 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-DK-A1AF-01 4 123166210 123166210 G A KIAA1109 Missense_Mutation p.R1651Q 0.04 benign(0.003) TCGA-DK-A1AF-01 4 151023764 151023764 G A DCLK2 Missense_Mutation p.E186K 0.16 tolerated(0.17) benign(0.268) TCGA-DK-A1AF-01 4 17528645 17528645 C A CLRN2 Silent p.L213L 0.08 TCGA-DK-A1AF-01 4 55961744 55961744 C T KDR Silent p.K939K 0.07 TCGA-DK-A1AF-01 4 79294005 79294005 C G FRAS1 Silent p.L1001L 0.09 TCGA-DK-A1AF-01 4 95129666 95129666 G A SMARCAD1 Missense_Mutation p.E41K 0.06 tolerated_low_confidence(0.34) benign(0.058) TCGA-DK-A1AF-01 4 954890 954890 C T DGKQ Missense_Mutation p.E892K 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A1AF-01 5 150920280 150920280 C G FAT2 Missense_Mutation p.E2963Q 0.05 possibly_damaging(0.474) TCGA-DK-A1AF-01 5 76028929 76028929 C G F2R Missense_Mutation p.I293M 0.05 deleterious(0) probably_damaging(0.989) TCGA-DK-A1AF-01 6 159191809 159191809 C G EZR Missense_Mutation p.K359N 0.06 tolerated(0.06) benign(0.056) TCGA-DK-A1AF-01 6 28333833 28333833 G A ZKSCAN3 Nonsense_Mutation p.W463* 0.08 TCGA-DK-A1AF-01 6 30670531 30670531 C T MDC1 Missense_Mutation p.E1997K 0.06 deleterious(0.03) probably_damaging(0.951) TCGA-DK-A1AF-01 6 31734536 31734536 G C VWA7 Missense_Mutation p.Q630E 0.07 tolerated(0.32) benign(0.117) TCGA-DK-A1AF-01 6 31735227 31735227 G C VWA7 Missense_Mutation p.F567L 0.06 tolerated(0.44) benign(0.057) TCGA-DK-A1AF-01 6 35088708 35088708 C T TCP11 Silent p.Q244Q 0.08 TCGA-DK-A1AF-01 6 43193688 43193688 G A DNPH1 Intron 0.11 TCGA-DK-A1AF-01 6 43400436 43400436 G A ABCC10 Missense_Mutation p.E240K 0.08 tolerated(0.85) benign(0.008) TCGA-DK-A1AF-01 6 74345112 74345112 C G SLC17A5 Missense_Mutation p.R271T 0.11 tolerated(0.48) benign(0.009) TCGA-DK-A1AF-01 6 83845382 83845382 C T DOPEY1 Missense_Mutation p.S972F 0.07 deleterious(0) possibly_damaging(0.845) TCGA-DK-A1AF-01 7 112472660 112472660 C G C7orf60 Missense_Mutation p.E182Q 0.04 tolerated(0.17) benign(0.202) TCGA-DK-A1AF-01 7 150698385 150698385 G C NOS3 Missense_Mutation p.E434Q 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A1AF-01 7 155094081 155094081 C T INSIG1 Silent p.L220L 0.07 TCGA-DK-A1AF-01 7 4794948 4794948 G C FOXK1 Silent p.L328L 0.09 TCGA-DK-A1AF-01 7 73010266 73010266 C G MLXIPL Missense_Mutation p.E698Q 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A1AF-01 7 87516657 87516657 C T DBF4 Missense_Mutation p.S155L 0.10 deleterious(0) benign(0.434) TCGA-DK-A1AF-01 7 92734318 92734318 C G SAMD9 Missense_Mutation p.D365H 0.05 tolerated(0.14) benign(0.004) TCGA-DK-A1AF-01 8 104898276 104898276 C G RIMS2 Silent p.L483L 0.10 TCGA-DK-A1AF-01 8 28575593 28575593 G A EXTL3 Missense_Mutation p.E673K 0.07 deleterious(0) possibly_damaging(0.674) TCGA-DK-A1AF-01 8 38173473 38173473 C G WHSC1L1 Missense_Mutation p.R648T 0.03 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A1AF-01 8 61736653 61736653 G C CHD7 Intron 0.08 TCGA-DK-A1AF-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.05 deleterious(0) probably_damaging(1) TCGA-DK-A1AF-01 9 99301371 99301371 C T CDC14B Missense_Mutation p.E206K 0.07 deleterious(0) possibly_damaging(0.893) TCGA-DK-A1AF-01 X 123179197 123179197 C T STAG2 Nonsense_Mutation p.R216* 0.06 TCGA-DK-A1AF-01 X 1508489 1508489 G A SLC25A6 Silent p.Y81Y 0.05 TCGA-DK-A1AF-01 X 154197729 154197729 G A F8 Missense_Mutation p.L296F 0.06 deleterious(0.02) benign(0.208) TCGA-DK-A1AF-01 X 47918817 47918817 C G ZNF630 Missense_Mutation p.Q338H 0.06 deleterious(0) possibly_damaging(0.499) TCGA-DK-A1AF-01 X 48460204 48460204 G A WDR13 Missense_Mutation p.M288I 0.08 tolerated(0.1) benign(0.001) TCGA-DK-A1AF-01 X 55514287 55514287 C G USP51 Silent p.L362L 0.06 TCGA-DK-A1AG-01 10 106113570 106113570 C T CCDC147 5'UTR 0.51 TCGA-DK-A1AG-01 10 119043793 119043793 C A PDZD8 Missense_Mutation p.L817F 0.06 tolerated(0.12) benign(0.025) TCGA-DK-A1AG-01 10 124339372 124339372 A T DMBT1 Missense_Mutation p.T320S 0.27 tolerated(1) benign(0.03) TCGA-DK-A1AG-01 10 24810779 24810779 C T KIAA1217 Silent p.L793L 0.39 TCGA-DK-A1AG-01 10 27702774 27702774 C T PTCHD3 Missense_Mutation p.A136T 0.48 tolerated(0.17) benign(0.023) TCGA-DK-A1AG-01 10 8115929 8115929 A - GATA3 Frame_Shift_Del p.S427Pfs*49 0.28 TCGA-DK-A1AG-01 10 88988313 88988313 C G NUTM2A Missense_Mutation p.Q226E 0.28 deleterious(0) possibly_damaging(0.652) TCGA-DK-A1AG-01 11 102709926 102709926 C T MMP3 Silent p.L328L 0.42 TCGA-DK-A1AG-01 11 108117799 108117799 G A ATM Missense_Mutation p.R337H 0.43 deleterious(0.02) probably_damaging(0.995) TCGA-DK-A1AG-01 11 12234924 12234924 C G MICAL2 Missense_Mutation p.Q272E 0.38 deleterious(0.03) probably_damaging(0.929) TCGA-DK-A1AG-01 11 134114848 134114848 C G VPS26B Missense_Mutation p.I246M 0.36 deleterious(0) probably_damaging(0.982) TCGA-DK-A1AG-01 11 3688596 3688596 G A CHRNA10 Missense_Mutation p.A254V 0.46 deleterious(0) probably_damaging(0.979) TCGA-DK-A1AG-01 11 61665640 61665640 C G RAB3IL1 3'UTR 0.42 TCGA-DK-A1AG-01 11 62415960 62415960 T A INTS5 Missense_Mutation p.E531V 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AG-01 11 62415961 62415961 C T INTS5 Missense_Mutation p.E531K 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A1AG-01 11 67077296 67077312 CACAGTGCTGGCCTATG - SSH3 Frame_Shift_Del p.T423Hfs*64 0.43 TCGA-DK-A1AG-01 11 94599320 94599320 G A AMOTL1 Nonsense_Mutation p.W825* 0.44 TCGA-DK-A1AG-01 12 100733036 100733036 A G SCYL2 3'UTR 0.14 TCGA-DK-A1AG-01 12 109306282 109306282 C G SVOP 3'UTR 0.43 TCGA-DK-A1AG-01 12 113385903 113385903 C T OAS3 Missense_Mutation p.P343L 0.37 tolerated(0.08) benign(0.016) TCGA-DK-A1AG-01 12 1940449 1940449 C T LRTM2 Missense_Mutation p.S139L 0.46 tolerated(0.98) benign(0.001) TCGA-DK-A1AG-01 12 21716178 21716178 G A GYS2 Nonsense_Mutation p.R309* 0.15 TCGA-DK-A1AG-01 12 32873665 32873665 C T DNM1L Nonsense_Mutation p.Q270* 0.37 TCGA-DK-A1AG-01 12 56478817 56478817 G A ERBB3 Missense_Mutation p.M91I 0.35 tolerated(0.23) benign(0.082) TCGA-DK-A1AG-01 12 94243743 94243743 C T CRADD Intron 0.46 TCGA-DK-A1AG-01 13 25283562 25283562 C T ATP12A Missense_Mutation p.R858C 0.43 deleterious(0) probably_damaging(0.995) TCGA-DK-A1AG-01 13 32910686 32910686 G C BRCA2 Missense_Mutation p.E732Q 0.47 tolerated(0.05) benign(0.138) TCGA-DK-A1AG-01 13 38211379 38211379 G T TRPC4 Missense_Mutation p.F870L 0.08 tolerated_low_confidence(0.09) benign(0.138) TCGA-DK-A1AG-01 13 52952331 52952331 G A THSD1 Missense_Mutation p.P592S 0.45 tolerated(0.17) benign(0.027) TCGA-DK-A1AG-01 13 52952573 52952573 G C THSD1 Missense_Mutation p.S511C 0.41 deleterious(0) probably_damaging(0.99) TCGA-DK-A1AG-01 13 52952895 52952895 G A THSD1 Nonsense_Mutation p.Q404* 0.36 TCGA-DK-A1AG-01 13 72147065 72147065 C T DACH1 Missense_Mutation p.M404I 0.39 benign(0.279) TCGA-DK-A1AG-01 14 21894345 21894345 G C CHD8 Nonsense_Mutation p.S553* 0.42 TCGA-DK-A1AG-01 14 50472404 50472404 C T C14orf182 Silent p.P38P 0.43 TCGA-DK-A1AG-01 15 45399061 45399061 G A DUOX2 Silent p.I600I 0.39 TCGA-DK-A1AG-01 15 75248616 75248616 G C RPP25 Silent p.R103R 0.26 TCGA-DK-A1AG-01 15 76019910 76019910 C A ODF3L1 3'UTR 0.44 TCGA-DK-A1AG-01 16 10721530 10721530 G C TEKT5 Missense_Mutation p.I456M 0.46 deleterious(0.01) benign(0.2) TCGA-DK-A1AG-01 16 15045471 15045471 G - NPIPA1 Splice_Site p.X215_splice 0.10 TCGA-DK-A1AG-01 16 1822511 1822511 T C MRPS34 Missense_Mutation p.K123R 0.04 tolerated(0.32) benign(0.005) TCGA-DK-A1AG-01 16 2012571 2012571 C T RPS2 Silent p.K212K 0.45 TCGA-DK-A1AG-01 16 22385642 22385642 C G CDR2 5'UTR 0.34 TCGA-DK-A1AG-01 16 26146939 26146939 G A HS3ST4 Silent p.V247V 0.44 TCGA-DK-A1AG-01 16 3021898 3021898 C T PAQR4 Silent p.G257G 0.40 TCGA-DK-A1AG-01 16 58320015 58320015 G A PRSS54 Silent p.I116I 0.38 TCGA-DK-A1AG-01 16 58320044 58320044 G A PRSS54 Missense_Mutation p.H107Y 0.41 tolerated(0.11) benign(0.176) TCGA-DK-A1AG-01 16 68847234 68847234 G A CDH1 Missense_Mutation p.E386K 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AG-01 16 723543 723543 C T RHOT2 Silent p.V598V 0.45 TCGA-DK-A1AG-01 17 2605306 2605306 C T CLUH Missense_Mutation p.R136Q 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-DK-A1AG-01 17 35343960 35343960 C T AATF Nonsense_Mutation p.Q293* 0.24 TCGA-DK-A1AG-01 17 38457718 38457718 A G CDC6 Splice_Site p.X485_splice 0.40 TCGA-DK-A1AG-01 17 6337283 6337283 A G AIPL1 Missense_Mutation p.S78P 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A1AG-01 17 7162821 7162821 C T ELP5 Intron 0.44 TCGA-DK-A1AG-01 17 72741326 72741326 C G RAB37 Intron 0.50 TCGA-DK-A1AG-01 17 78318808 78318808 C T RNF213 Nonsense_Mutation p.Q2225* 0.46 TCGA-DK-A1AG-01 18 33077830 33077830 C T INO80C Silent p.A3A 0.42 TCGA-DK-A1AG-01 19 10403332 10403332 G A ICAM5 Missense_Mutation p.E336K 0.39 deleterious(0.02) possibly_damaging(0.563) TCGA-DK-A1AG-01 19 16532171 16532171 G A EPS15L1 Silent p.F303F 0.53 TCGA-DK-A1AG-01 19 17897393 17897393 G A FCHO1 Missense_Mutation p.E813K 0.36 deleterious(0.04) probably_damaging(0.94) TCGA-DK-A1AG-01 19 2213964 2213964 C A DOT1L Silent p.L592L 0.48 TCGA-DK-A1AG-01 19 2222507 2222507 C T DOT1L Silent p.V1113V 0.50 TCGA-DK-A1AG-01 19 3747941 3747941 C T TJP3 Silent p.D833D 0.31 TCGA-DK-A1AG-01 19 44501575 44501575 G C ZNF155 Missense_Mutation p.K533N 0.36 tolerated(0.46) benign(0.017) TCGA-DK-A1AG-01 19 4501319 4501319 G A HDGFRP2 Missense_Mutation p.D641N 0.38 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-DK-A1AG-01 19 49119427 49119427 G A RPL18 Silent p.R110R 0.47 TCGA-DK-A1AG-01 19 54403679 54403679 C T PRKCG Silent p.Y460Y 0.22 TCGA-DK-A1AG-01 19 55773977 55773977 C G HSPBP1 Nonstop_Mutation p.*360Sext*52 0.41 TCGA-DK-A1AG-01 19 56969551 56969551 C A ZNF667 Nonsense_Mutation p.E76* 0.28 TCGA-DK-A1AG-01 19 57910375 57910375 C T ZNF548 Silent p.F252F 0.37 TCGA-DK-A1AG-01 19 58469883 58469883 C G C19orf18 3'UTR 0.41 TCGA-DK-A1AG-01 19 6007099 6007099 C T RFX2 Nonsense_Mutation p.W442* 0.39 TCGA-DK-A1AG-01 19 6735965 6735965 C G GPR108 Missense_Mutation p.G82A 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A1AG-01 19 9076763 9076763 C T MUC16 Missense_Mutation p.M3561I 0.09 unknown(0) TCGA-DK-A1AG-01 1 10714109 10714109 G - CASZ1 Frame_Shift_Del p.H669Tfs*17 0.08 TCGA-DK-A1AG-01 1 150248969 150248969 A G C1orf54 Missense_Mutation p.T77A 0.40 deleterious(0.01) benign(0.046) TCGA-DK-A1AG-01 1 151785462 151785462 C T RORC Missense_Mutation p.E416K 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A1AG-01 1 155292628 155292628 C T RUSC1 Missense_Mutation p.S355L 0.50 tolerated_low_confidence(0.29) benign(0.012) TCGA-DK-A1AG-01 1 205240950 205240950 G T TMCC2 Nonsense_Mutation p.E610* 0.46 TCGA-DK-A1AG-01 1 235966211 235966211 C T LYST Missense_Mutation p.D1237N 0.10 tolerated(0.05) benign(0.007) TCGA-DK-A1AG-01 1 2440291 2440291 C T PANK4 Missense_Mutation p.E773K 0.56 tolerated_low_confidence(0.27) benign(0.003) TCGA-DK-A1AG-01 1 24419480 24419480 C T MYOM3 Silent p.S349S 0.52 TCGA-DK-A1AG-01 1 247057966 247057966 C G AHCTF1 Missense_Mutation p.R609T 0.50 deleterious(0.01) benign(0.17) TCGA-DK-A1AG-01 1 27210712 27210712 C G GPN2 Missense_Mutation p.E267Q 0.44 deleterious(0.03) possibly_damaging(0.515) TCGA-DK-A1AG-01 1 43630462 43630462 C T EBNA1BP2 Missense_Mutation p.R296Q 0.15 deleterious(0.01) possibly_damaging(0.705) TCGA-DK-A1AG-01 20 3765860 3765860 T A CENPB Missense_Mutation p.E424V 0.31 tolerated(0.37) unknown(0) TCGA-DK-A1AG-01 20 40049283 40049283 C G CHD6 Missense_Mutation p.E1998Q 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.529) TCGA-DK-A1AG-01 20 44569785 44569785 C G PCIF1 Silent p.L204L 0.40 TCGA-DK-A1AG-01 20 44569786 44569786 C T PCIF1 Missense_Mutation p.R205C 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A1AG-01 20 44815269 44815269 C T CDH22 Missense_Mutation p.E541K 0.44 deleterious(0.04) probably_damaging(0.996) TCGA-DK-A1AG-01 20 55049783 55049783 G A RTFDC1 Missense_Mutation p.E72K 0.36 tolerated(0.27) probably_damaging(0.911) TCGA-DK-A1AG-01 20 55049784 55049784 A T RTFDC1 Missense_Mutation p.E72V 0.37 tolerated(0.05) probably_damaging(0.976) TCGA-DK-A1AG-01 21 11021128 11021128 G A BAGE2 RNA 0.05 TCGA-DK-A1AG-01 21 37833619 37833619 G A CLDN14 Silent p.F125F 0.36 TCGA-DK-A1AG-01 21 38126600 38126600 C T HLCS Missense_Mutation p.D710N 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A1AG-01 21 45681066 45681066 G C DNMT3L Nonsense_Mutation p.S26* 0.41 TCGA-DK-A1AG-01 22 36708249 36708249 G C MYH9 Missense_Mutation p.L525V 0.08 probably_damaging(0.966) TCGA-DK-A1AG-01 22 44364695 44364695 C T SAMM50 Nonsense_Mutation p.Q107* 0.16 TCGA-DK-A1AG-01 2 110015235 110015235 C T SH3RF3 Missense_Mutation p.R379C 0.27 deleterious(0.02) probably_damaging(0.918) TCGA-DK-A1AG-01 2 118731529 118731529 G C CCDC93 Silent p.L281L 0.40 TCGA-DK-A1AG-01 2 131890543 131890543 C G PLEKHB2 Silent p.A134A 0.44 TCGA-DK-A1AG-01 2 136519444 136519444 C T UBXN4 Nonsense_Mutation p.Q189* 0.43 TCGA-DK-A1AG-01 2 163029727 163029727 G C FAP Nonsense_Mutation p.S680* 0.38 TCGA-DK-A1AG-01 2 170917627 170917627 G A UBR3 Silent p.L1608L 0.08 TCGA-DK-A1AG-01 2 27301966 27301966 C G EMILIN1 Silent p.L11L 0.44 TCGA-DK-A1AG-01 2 27302012 27302012 C G EMILIN1 Missense_Mutation p.R27G 0.49 possibly_damaging(0.868) TCGA-DK-A1AG-01 2 62934300 62934300 A C EHBP1 5'UTR 0.48 TCGA-DK-A1AG-01 2 85808999 85808999 G A VAMP8 3'UTR 0.48 TCGA-DK-A1AG-01 2 86459784 86459784 T A REEP1 Missense_Mutation p.M194L 0.42 tolerated_low_confidence(0.23) benign(0.067) TCGA-DK-A1AG-01 3 105400433 105400433 G C CBLB Missense_Mutation p.S773C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.667) TCGA-DK-A1AG-01 3 12858614 12858614 C T CAND2 Missense_Mutation p.S728F 0.44 tolerated(0.22) possibly_damaging(0.602) TCGA-DK-A1AG-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.50 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A1AG-01 4 110866376 110866376 G A EGF Silent p.L295L 0.46 TCGA-DK-A1AG-01 4 119736285 119736285 G A SEC24D Silent p.G233G 0.54 TCGA-DK-A1AG-01 4 141578845 141578845 T C TBC1D9 Silent p.L681L 0.50 TCGA-DK-A1AG-01 4 175898670 175898670 G A ADAM29 Missense_Mutation p.G665D 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-A1AG-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.82 deleterious(0.01) possibly_damaging(0.594) TCGA-DK-A1AG-01 4 187541182 187541182 G C FAT1 Missense_Mutation p.F2186L 0.47 probably_damaging(0.998) TCGA-DK-A1AG-01 4 3516518 3516518 G A LRPAP1 Silent p.H324H 0.13 TCGA-DK-A1AG-01 4 52945953 52945953 C T SPATA18 Missense_Mutation p.P408L 0.43 deleterious(0.03) probably_damaging(0.991) TCGA-DK-A1AG-01 4 79403578 79403578 C G FRAS1 Missense_Mutation p.P2881A 0.42 probably_damaging(0.954) TCGA-DK-A1AG-01 4 8224616 8224616 G A SH3TC1 Missense_Mutation p.E388K 0.40 tolerated(0.14) benign(0.015) TCGA-DK-A1AG-01 5 101585389 101585389 G A SLCO4C1 Missense_Mutation p.P525S 0.37 deleterious(0.02) possibly_damaging(0.893) TCGA-DK-A1AG-01 5 140249093 140249093 C G PCDHA11 Silent p.L135L 0.42 TCGA-DK-A1AG-01 5 156946865 156946865 G T ADAM19 Silent p.T194T 0.36 TCGA-DK-A1AG-01 5 167986163 167986163 C T PANK3 Splice_Site p.X313_splice 0.59 TCGA-DK-A1AG-01 5 180167034 180167034 C G OR2Y1 Missense_Mutation p.E9Q 0.39 tolerated(0.58) benign(0.002) TCGA-DK-A1AG-01 5 35065622 35065622 C G PRLR Missense_Mutation p.E480Q 0.40 tolerated(0.15) possibly_damaging(0.545) TCGA-DK-A1AG-01 5 454125 454125 G C EXOC3 Missense_Mutation p.E335D 0.41 deleterious(0.01) probably_damaging(0.973) TCGA-DK-A1AG-01 6 10621627 10621627 C T GCNT2 Silent p.L323L 0.40 TCGA-DK-A1AG-01 6 119221997 119221997 C T ASF1A Missense_Mutation p.S59F 0.42 deleterious(0) probably_damaging(0.997) TCGA-DK-A1AG-01 6 144508138 144508138 C T STX11 Missense_Mutation p.A125V 0.41 tolerated(0.24) benign(0.161) TCGA-DK-A1AG-01 6 28333766 28333766 C T ZKSCAN3 Missense_Mutation p.L441F 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A1AG-01 6 2954877 2954877 C T SERPINB6 Missense_Mutation p.V127I 0.39 tolerated(0.07) benign(0.166) TCGA-DK-A1AG-01 6 31938495 31938495 C G DXO Missense_Mutation p.E234Q 0.43 deleterious(0) probably_damaging(0.929) TCGA-DK-A1AG-01 6 31938905 31938905 C G DXO Missense_Mutation p.E126Q 0.42 tolerated(0.58) benign(0.024) TCGA-DK-A1AG-01 6 32522534 32522534 C G RNU1-61P 5'Flank 0.18 TCGA-DK-A1AG-01 6 32551898 32551898 C T HLA-DRB1 Missense_Mutation p.V120M 0.22 deleterious(0.03) possibly_damaging(0.882) TCGA-DK-A1AG-01 6 70098735 70098735 G C BAI3 Silent p.L1507L 0.50 TCGA-DK-A1AG-01 7 100151029 100151029 C T AGFG2 Missense_Mutation p.P164L 0.41 deleterious(0.04) benign(0.016) TCGA-DK-A1AG-01 7 21550696 21550696 C G SP4 Missense_Mutation p.L722V 0.47 deleterious(0) probably_damaging(0.992) TCGA-DK-A1AG-01 7 24911608 24911608 C T OSBPL3 Silent p.L59L 0.33 TCGA-DK-A1AG-01 7 44113402 44113402 G A POLM Missense_Mutation p.L432F 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A1AG-01 7 5541202 5541202 A G FBXL18 Missense_Mutation p.F233S 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AG-01 7 65553885 65553885 C T ASL Silent p.F270F 0.47 TCGA-DK-A1AG-01 7 73483051 73483051 C A ELN 3'UTR 0.38 TCGA-DK-A1AG-01 8 144803972 144803972 G A MAPK15 Silent p.A460A 0.09 TCGA-DK-A1AG-01 8 146171568 146171568 C T ZNF16 Missense_Mutation p.E9K 0.48 tolerated_low_confidence(0.28) benign(0.002) TCGA-DK-A1AG-01 8 27995406 27995406 G C ELP3 Missense_Mutation p.Q366H 0.43 deleterious(0) possibly_damaging(0.849) TCGA-DK-A1AG-01 8 59404977 59404977 C G CYP7A1 Missense_Mutation p.D384H 0.41 tolerated(0.06) probably_damaging(0.995) TCGA-DK-A1AG-01 8 87878760 87878760 C G CNBD1 Missense_Mutation p.H13D 0.46 deleterious(0.02) possibly_damaging(0.655) TCGA-DK-A1AG-01 8 95953097 95953097 C G TP53INP1 Missense_Mutation p.E25Q 0.38 tolerated(0.05) probably_damaging(0.996) TCGA-DK-A1AG-01 9 131019750 131019750 C T GOLGA2 Missense_Mutation p.E898K 0.85 tolerated(0.13) benign(0.244) TCGA-DK-A1AG-01 9 15479597 15479609 CGTCCTCTTTTAG - PSIP1 Frame_Shift_Del p.P178Hfs*19 0.50 TCGA-DK-A1AG-01 9 17466028 17466028 C T CNTLN Missense_Mutation p.S1194L 0.81 deleterious(0) probably_damaging(0.999) TCGA-DK-A1AG-01 9 40773179 40773179 G C ZNF658 Nonsense_Mutation p.S699* 0.17 TCGA-DK-A1AG-01 9 65506287 65506287 C A SPATA31A7 Nonsense_Mutation p.E425* 0.44 TCGA-DK-A1AG-01 X 119739341 119739341 G A MCTS1 Missense_Mutation p.E32K 0.90 tolerated(0.08) benign(0.028) TCGA-DK-A1AG-01 X 131157385 131157385 G C MST4 5'UTR 0.77 TCGA-DK-A1AG-01 X 154194885 154194885 C G F8 Missense_Mutation p.E363Q 0.88 deleterious(0.02) benign(0.374) TCGA-DK-A1AG-01 X 44950110 44950110 G - KDM6A Splice_Site p.X1293_splice 0.46 TCGA-DK-A1AG-01 X 62570437 62570437 C G SPIN4 Missense_Mutation p.E88Q 0.28 deleterious(0.04) probably_damaging(0.943) TCGA-DK-A1AG-01 X 70621446 70621446 A G TAF1 Silent p.Q1305Q 0.21 TCGA-DK-A1AG-01 X 78616969 78616969 C T ITM2A Missense_Mutation p.R187K 0.26 tolerated(0.59) benign(0.001) TCGA-DK-A2HX-01 10 104491933 104491933 C T SFXN2 Nonsense_Mutation p.Q227* 0.32 TCGA-DK-A2HX-01 10 106075629 106075629 G T ITPRIP Silent p.R61R 0.18 TCGA-DK-A2HX-01 10 111893106 111893106 G C ADD3 Missense_Mutation p.K617N 0.12 tolerated(0.37) benign(0.081) TCGA-DK-A2HX-01 10 123353267 123353267 C T FGFR2 Missense_Mutation p.R22Q 0.30 deleterious_low_confidence(0.05) possibly_damaging(0.71) TCGA-DK-A2HX-01 10 15325934 15325934 C T FAM171A1 Missense_Mutation p.A90T 0.06 deleterious(0.01) benign(0.026) TCGA-DK-A2HX-01 10 18242228 18242228 C T SLC39A12 Missense_Mutation p.S8L 0.05 tolerated_low_confidence(1) benign(0.005) TCGA-DK-A2HX-01 10 99148350 99148350 G A RRP12 Missense_Mutation p.S262L 0.16 tolerated(0.22) benign(0.005) TCGA-DK-A2HX-01 11 110486316 110486316 G A ARHGAP20 Missense_Mutation p.S169F 0.12 deleterious(0.03) benign(0.086) TCGA-DK-A2HX-01 11 64875072 64875072 G A VPS51 Silent p.K126K 0.21 TCGA-DK-A2HX-01 11 66330384 66330384 G C CTSF 3'Flank 0.07 TCGA-DK-A2HX-01 12 100731227 100731227 G A SCYL2 Silent p.L696L 0.09 TCGA-DK-A2HX-01 12 124821373 124821373 G A NCOR2 Missense_Mutation p.S2014L 0.11 possibly_damaging(0.905) TCGA-DK-A2HX-01 12 57597024 57597024 G T LRP1 Missense_Mutation p.R3591L 0.16 probably_damaging(0.999) TCGA-DK-A2HX-01 12 69265567 69265567 C T CPM Missense_Mutation p.G143E 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A2HX-01 12 88912549 88912549 A G KITLG Silent p.S96S 0.31 TCGA-DK-A2HX-01 12 88912550 88912550 C A KITLG Missense_Mutation p.S96I 0.31 deleterious(0) probably_damaging(0.979) TCGA-DK-A2HX-01 13 42882729 42882729 C T AKAP11 Missense_Mutation p.H1753Y 0.14 deleterious(0.02) possibly_damaging(0.791) TCGA-DK-A2HX-01 13 73539485 73539485 G C PIBF1 Missense_Mutation p.R636T 0.08 deleterious(0) probably_damaging(0.99) TCGA-DK-A2HX-01 13 79945293 79945293 G A RBM26 Missense_Mutation p.R141C 0.08 deleterious(0) unknown(0) TCGA-DK-A2HX-01 13 99105345 99105345 G A STK24 3'UTR 0.17 TCGA-DK-A2HX-01 14 60619882 60619882 G A DHRS7 Silent p.V136V 0.21 TCGA-DK-A2HX-01 14 73664744 73664744 G A PSEN1 Missense_Mutation p.V259M 0.10 tolerated(0.11) possibly_damaging(0.839) TCGA-DK-A2HX-01 14 93125804 93125804 C T RIN3 Silent p.L775L 0.08 TCGA-DK-A2HX-01 15 23191865 23191865 C T WHAMMP3 RNA 0.25 TCGA-DK-A2HX-01 15 63984690 63984690 G C HERC1 Nonsense_Mutation p.S1917* 0.06 TCGA-DK-A2HX-01 15 65447361 65447361 G A CLPX Missense_Mutation p.A457V 0.19 tolerated(0.12) benign(0.049) TCGA-DK-A2HX-01 15 65983668 65983668 G A DENND4A Silent p.L1087L 0.08 TCGA-DK-A2HX-01 15 68987486 68987486 G A CORO2B Missense_Mutation p.R75K 0.21 tolerated(0.25) benign(0.027) TCGA-DK-A2HX-01 15 76254308 76254308 C T NRG4 Missense_Mutation p.E38K 0.15 tolerated(0.09) probably_damaging(0.97) TCGA-DK-A2HX-01 15 93547859 93547859 G T CHD2 Missense_Mutation p.D1431Y 0.05 deleterious(0.02) benign(0.039) TCGA-DK-A2HX-01 16 69373204 69373204 G C COG8 Missense_Mutation p.F84L 0.11 deleterious(0.01) possibly_damaging(0.835) TCGA-DK-A2HX-01 17 40971588 40971588 G A BECN1 Missense_Mutation p.R80C 0.13 tolerated(0.27) probably_damaging(0.939) TCGA-DK-A2HX-01 17 47893222 47893222 G A KAT7 Missense_Mutation p.E304K 0.14 tolerated(0.08) benign(0.017) TCGA-DK-A2HX-01 17 4799524 4799524 G T MINK1 Missense_Mutation p.D1168Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-DK-A2HX-01 17 4883529 4883529 T C CAMTA2 Missense_Mutation p.E386G 0.49 deleterious_low_confidence(0.02) possibly_damaging(0.515) TCGA-DK-A2HX-01 17 54450013 54450013 G T ANKFN1 Missense_Mutation p.S206I 0.20 deleterious(0.03) benign(0.039) TCGA-DK-A2HX-01 17 54991298 54991298 C T TRIM25 Missense_Mutation p.E18K 0.24 tolerated(0.16) benign(0.139) TCGA-DK-A2HX-01 17 8076764 8076764 C T TMEM107 3'Flank 0.16 TCGA-DK-A2HX-01 18 33795828 33795828 G A MOCOS Missense_Mutation p.R562K 0.06 tolerated(0.93) benign(0.035) TCGA-DK-A2HX-01 18 51900620 51900620 G A C18orf54 Missense_Mutation p.E338K 0.06 deleterious(0.03) possibly_damaging(0.486) TCGA-DK-A2HX-01 18 59166706 59166706 C T CDH20 Silent p.S178S 0.23 TCGA-DK-A2HX-01 19 11094864 11094864 C T SMARCA4 Missense_Mutation p.R13W 0.19 unknown(0) TCGA-DK-A2HX-01 19 18499744 18499744 G C GDF15 Nonstop_Mutation p.*309Sext*41 0.17 TCGA-DK-A2HX-01 19 19613328 19613328 C A GATAD2A Silent p.L588L 0.15 TCGA-DK-A2HX-01 19 22939368 22939368 T C ZNF99 3'Flank 0.29 TCGA-DK-A2HX-01 19 35085106 35085106 C T SCGB2B2 Missense_Mutation p.E74K 0.09 tolerated_low_confidence(0.2) possibly_damaging(0.874) TCGA-DK-A2HX-01 19 46307611 46307611 C T RSPH6A Missense_Mutation p.D518N 0.12 tolerated(0.08) benign(0.298) TCGA-DK-A2HX-01 19 49132875 49132875 G A SPHK2 Missense_Mutation p.A604T 0.29 tolerated(0.66) benign(0.004) TCGA-DK-A2HX-01 19 51522384 51522384 C T KLK10 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-DK-A2HX-01 19 54973132 54973132 C T LENG8 3'UTR 0.13 TCGA-DK-A2HX-01 19 56466505 56466505 G T NLRP8 Nonsense_Mutation p.E361* 0.29 TCGA-DK-A2HX-01 19 9090712 9090712 T C MUC16 Missense_Mutation p.H368R 0.24 unknown(0) TCGA-DK-A2HX-01 1 151378506 151378506 C T POGZ Missense_Mutation p.R1002H 0.10 tolerated(0.11) probably_damaging(0.996) TCGA-DK-A2HX-01 1 158596663 158596663 G A SPTA1 Silent p.F1933F 0.17 TCGA-DK-A2HX-01 1 158646079 158646079 C T SPTA1 Missense_Mutation p.E322K 0.13 tolerated(0.28) benign(0.12) TCGA-DK-A2HX-01 1 15870967 15870967 C T DNAJC16 Silent p.P216P 0.57 TCGA-DK-A2HX-01 1 16332663 16332663 C T C1orf64 Missense_Mutation p.P111L 0.10 tolerated(0.07) benign(0.138) TCGA-DK-A2HX-01 1 182841625 182841625 C T DHX9 Nonsense_Mutation p.Q571* 0.06 TCGA-DK-A2HX-01 1 197890578 197890578 C T LHX9 Silent p.F174F 0.22 TCGA-DK-A2HX-01 1 20246922 20246922 G A PLA2G2E Missense_Mutation p.R103W 0.17 deleterious(0.02) possibly_damaging(0.863) TCGA-DK-A2HX-01 1 203018835 203018835 G A PPFIA4 5'Flank 0.64 TCGA-DK-A2HX-01 1 214557839 214557839 C G PTPN14 Missense_Mutation p.K453N 0.20 tolerated(1) benign(0.009) TCGA-DK-A2HX-01 1 228589812 228589812 C T TRIM11 Silent p.A153A 0.12 TCGA-DK-A2HX-01 1 237729962 237729962 G T RYR2 Nonsense_Mutation p.E1104* 0.17 TCGA-DK-A2HX-01 1 237765404 237765404 G C RYR2 Missense_Mutation p.R1559T 0.12 possibly_damaging(0.676) TCGA-DK-A2HX-01 1 249142538 249142538 C T ZNF672 Silent p.N355N 0.15 TCGA-DK-A2HX-01 1 27099361 27099361 C T ARID1A Nonsense_Mutation p.Q1200* 0.45 TCGA-DK-A2HX-01 1 32205620 32205620 C T BAI2 Missense_Mutation p.V692M 0.16 tolerated(0.09) probably_damaging(0.933) TCGA-DK-A2HX-01 1 39340782 39340782 G C GJA9 Missense_Mutation p.S330C 0.06 tolerated(0.07) possibly_damaging(0.75) TCGA-DK-A2HX-01 1 44071029 44071029 C T PTPRF Missense_Mutation p.H1102Y 0.17 tolerated(1) benign(0.017) TCGA-DK-A2HX-01 1 51436023 51436023 T A CDKN2C Intron 0.17 TCGA-DK-A2HX-01 1 74507499 74507499 C A LRRIQ3 Missense_Mutation p.E372D 0.24 tolerated(0.24) benign(0.09) TCGA-DK-A2HX-01 20 2795885 2795885 C T C20orf141 Missense_Mutation p.P19S 0.05 tolerated_low_confidence(0.45) possibly_damaging(0.803) TCGA-DK-A2HX-01 21 47423837 47423837 C T COL6A1 Silent p.G999G 0.10 TCGA-DK-A2HX-01 2 196664028 196664028 C T DNAH7 Missense_Mutation p.D3449N 0.19 tolerated(0.24) possibly_damaging(0.524) TCGA-DK-A2HX-01 2 207583042 207583042 C T DYTN 5'UTR 0.50 TCGA-DK-A2HX-01 2 220337647 220337647 G A SPEG Missense_Mutation p.V1326M 0.59 possibly_damaging(0.707) TCGA-DK-A2HX-01 2 223464733 223464733 A G FARSB Missense_Mutation p.I511T 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A2HX-01 2 27439745 27439745 C T ATRAID Silent p.L262L 0.34 TCGA-DK-A2HX-01 2 31754425 31754425 G T AL133247.2 Intron 0.38 TCGA-DK-A2HX-01 2 70314888 70314888 G A PCBP1 Missense_Mutation p.V5M 0.13 tolerated(0.09) benign(0.285) TCGA-DK-A2HX-01 2 99870742 99870742 C T LYG2 5'UTR 0.15 TCGA-DK-A2HX-01 3 130828651 130828651 G T NEK11 Missense_Mutation p.R114L 0.11 tolerated(0.12) benign(0.088) TCGA-DK-A2HX-01 3 160137215 160137215 C T SMC4 Nonsense_Mutation p.Q581* 0.06 TCGA-DK-A2HX-01 3 164905667 164905667 T C SLITRK3 3'UTR 0.10 TCGA-DK-A2HX-01 3 30032585 30032585 G A RBMS3 Missense_Mutation p.D398N 0.06 tolerated(0.17) possibly_damaging(0.63) TCGA-DK-A2HX-01 3 3078912 3078912 G C CNTN4 Missense_Mutation p.L664F 0.04 deleterious(0) probably_damaging(0.999) TCGA-DK-A2HX-01 3 49711824 49711824 G A APEH 5'UTR 0.18 TCGA-DK-A2HX-01 3 52456270 52456291 TCTCAGACTTATATCAGCGCTA - PHF7 Frame_Shift_Del p.D240Tfs*106 0.08 TCGA-DK-A2HX-01 3 64589991 64589991 G T ADAMTS9 Nonsense_Mutation p.S1164* 0.18 TCGA-DK-A2HX-01 3 8590590 8590590 G A LMCD1 Splice_Site p.X241_splice 0.38 TCGA-DK-A2HX-01 4 151729481 151729481 G C LRBA Nonsense_Mutation p.S1792* 0.26 TCGA-DK-A2HX-01 4 152065413 152065413 C T SH3D19 Missense_Mutation p.E424K 0.07 tolerated(0.13) possibly_damaging(0.531) TCGA-DK-A2HX-01 4 152086849 152086849 C T SH3D19 Splice_Site p.X232_splice 0.11 TCGA-DK-A2HX-01 4 4190623 4190623 G A OTOP1 Silent p.P582P 0.13 TCGA-DK-A2HX-01 4 47584075 47584075 G A ATP10D Silent p.K1249K 0.12 TCGA-DK-A2HX-01 4 8621390 8621390 C T CPZ 3'UTR 0.28 TCGA-DK-A2HX-01 5 139914968 139914968 C G ANKHD1 Nonsense_Mutation p.S2291* 0.06 TCGA-DK-A2HX-01 5 140250655 140250655 C T PCDHA11 Missense_Mutation p.P656L 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A2HX-01 5 148998498 148998498 C G ARHGEF37 Intron 0.19 TCGA-DK-A2HX-01 5 158750185 158750185 C G IL12B Missense_Mutation p.E81Q 0.04 deleterious(0) probably_damaging(0.942) TCGA-DK-A2HX-01 5 33937955 33937955 G A RXFP3 Silent p.A370A 0.18 TCGA-DK-A2HX-01 5 57790716 57790716 C G GAPT Missense_Mutation p.S118C 0.12 tolerated(0.17) benign(0.001) TCGA-DK-A2HX-01 5 66459603 66459603 G A MAST4 Silent p.L1532L 0.20 TCGA-DK-A2HX-01 5 74981125 74981125 C A POC5 Missense_Mutation p.M438I 0.17 tolerated(0.42) possibly_damaging(0.584) TCGA-DK-A2HX-01 5 76932777 76932777 G T OTP Missense_Mutation p.R106S 0.49 tolerated(0.08) probably_damaging(1) TCGA-DK-A2HX-01 6 10410338 10410338 C T TFAP2A Silent p.Q92Q 0.14 TCGA-DK-A2HX-01 6 123332247 123332247 C A CLVS2 Missense_Mutation p.F169L 0.13 deleterious(0.04) possibly_damaging(0.679) TCGA-DK-A2HX-01 6 129691064 129691064 G A LAMA2 Missense_Mutation p.E1630K 0.27 tolerated(0.51) benign(0.11) TCGA-DK-A2HX-01 6 132966336 132966336 G T TAAR1 Silent p.I269I 0.40 TCGA-DK-A2HX-01 6 29364446 29364446 C T OR12D2 5'UTR 0.31 TCGA-DK-A2HX-01 6 30862337 30862337 G A DDR1 Missense_Mutation p.D468N 0.05 deleterious(0.05) possibly_damaging(0.599) TCGA-DK-A2HX-01 6 35716341 35716341 C G ARMC12 Missense_Mutation p.F266L 0.08 deleterious(0.03) benign(0.054) TCGA-DK-A2HX-01 6 36651987 36651988 - T CDKN1A Frame_Shift_Ins p.M38Nfs*10 0.17 TCGA-DK-A2HX-01 6 36652126 36652139 GGCGAGGCCGGGAT - CDKN1A Frame_Shift_Del p.R84Vfs*40 0.31 TCGA-DK-A2HX-01 6 46660917 46660917 G C TDRD6 Missense_Mutation p.L1684F 0.12 deleterious(0) probably_damaging(0.938) TCGA-DK-A2HX-01 6 70909320 70909320 G A COL19A1 Missense_Mutation p.A1035T 0.29 deleterious(0.02) possibly_damaging(0.827) TCGA-DK-A2HX-01 7 130039926 130039926 C G CEP41 Missense_Mutation p.K309N 0.42 tolerated(0.07) benign(0.08) TCGA-DK-A2HX-01 7 142605800 142605800 C T TRPV5 Silent p.R690R 0.04 TCGA-DK-A2HX-01 7 150417944 150417944 C T GIMAP1 Silent p.G284G 0.15 TCGA-DK-A2HX-01 7 151864343 151864343 G A KMT2C Missense_Mutation p.S3213L 0.09 probably_damaging(0.998) TCGA-DK-A2HX-01 7 2259077 2259077 C T MAD1L1 Silent p.L162L 0.12 TCGA-DK-A2HX-01 8 105503599 105503599 C T LRP12 Missense_Mutation p.V628I 0.18 tolerated(0.35) benign(0.014) TCGA-DK-A2HX-01 8 106573710 106573710 G A ZFPM2 Splice_Site p.X140_splice 0.57 TCGA-DK-A2HX-01 8 11996072 11996072 C T USP17L2 Silent p.K66K 0.08 TCGA-DK-A2HX-01 8 32616847 32616847 C G NRG1 Missense_Mutation p.I323M 0.20 tolerated(0.08) possibly_damaging(0.564) TCGA-DK-A2HX-01 8 75757469 75757469 G A PI15 Missense_Mutation p.G167S 0.17 deleterious(0.03) probably_damaging(0.996) TCGA-DK-A2HX-01 8 90993117 90993117 C T NBN Missense_Mutation p.E109K 0.20 deleterious(0) possibly_damaging(0.528) TCGA-DK-A2HX-01 9 131243909 131243909 G A ODF2 Silent p.A298A 0.10 TCGA-DK-A2HX-01 9 14808019 14808019 G A FREM1 Missense_Mutation p.P1003S 0.11 tolerated(0.08) benign(0.072) TCGA-DK-A2HX-01 9 32784282 32784282 G A TMEM215 Missense_Mutation p.G34E 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A2HX-01 9 33342807 33342807 G A NFX1 Missense_Mutation p.E727K 0.31 deleterious(0) possibly_damaging(0.714) TCGA-DK-A2HX-01 9 86893129 86893129 G A SLC28A3 3'UTR 0.12 TCGA-DK-A2HX-01 X 132160985 132160985 C T USP26 Missense_Mutation p.A422T 0.18 tolerated(0.09) possibly_damaging(0.649) TCGA-DK-A2HX-01 X 1553955 1553955 G A ASMTL Silent p.S120S 0.06 TCGA-DK-A2HX-01 X 32235111 32235111 T C DMD Silent p.L2120L 0.41 TCGA-DK-A2HX-01 X 50213512 50213512 C G DGKK RNA 0.15 TCGA-DK-A2HX-01 X 56590917 56590917 T C UBQLN2 Missense_Mutation p.L204P 0.48 deleterious(0) probably_damaging(0.947) TCGA-DK-A2HX-01 X 64749124 64749124 G T LAS1L Missense_Mutation p.L272M 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A2I1-01 10 115534019 115534019 G T PLEKHS1 Nonsense_Mutation p.E230* 0.41 TCGA-DK-A2I1-01 10 116602857 116602857 C A FAM160B1 Missense_Mutation p.H230N 0.20 tolerated(0.57) benign(0) TCGA-DK-A2I1-01 10 116602895 116602895 C T FAM160B1 Silent p.L242L 0.21 TCGA-DK-A2I1-01 10 127505020 127505020 C G UROS Missense_Mutation p.D17H 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A2I1-01 10 127505119 127505119 C G UROS Intron 0.15 TCGA-DK-A2I1-01 10 14974951 14974951 G C DCLRE1C Missense_Mutation p.H228D 0.10 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I1-01 10 18803285 18803285 C G CACNB2 Missense_Mutation p.P264R 0.17 deleterious(0.01) possibly_damaging(0.474) TCGA-DK-A2I1-01 10 46967615 46967615 C T SYT15 Silent p.S154S 0.08 TCGA-DK-A2I1-01 10 52834425 52834425 C G PRKG1 Missense_Mutation p.I25M 0.37 deleterious(0) probably_damaging(0.975) TCGA-DK-A2I1-01 10 5959443 5959443 G C FBXO18 Missense_Mutation p.E668Q 0.34 tolerated(0.08) possibly_damaging(0.493) TCGA-DK-A2I1-01 10 90342996 90342996 C T RNLS 5'Flank 0.46 TCGA-DK-A2I1-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.44 TCGA-DK-A2I1-01 11 103152912 103152912 G T DYNC2H1 Missense_Mutation p.W3596L 0.14 probably_damaging(0.945) TCGA-DK-A2I1-01 11 111941994 111941994 G A PIH1D2 Silent p.V105V 0.19 TCGA-DK-A2I1-01 11 118023348 118023348 C T SCN4B Nonsense_Mutation p.W14* 0.30 TCGA-DK-A2I1-01 11 129817136 129817136 C T PRDM10 Missense_Mutation p.E142K 0.49 tolerated_low_confidence(0.05) benign(0.039) TCGA-DK-A2I1-01 11 18637037 18637037 C T SPTY2D1 Missense_Mutation p.E262K 0.60 tolerated(0.13) benign(0.292) TCGA-DK-A2I1-01 11 27148986 27148986 G A BBOX1 Missense_Mutation p.E384K 0.27 tolerated(1) benign(0) TCGA-DK-A2I1-01 11 3111812 3111812 C T OSBPL5 Missense_Mutation p.E792K 0.31 tolerated(0.12) benign(0.024) TCGA-DK-A2I1-01 11 32975498 32975498 C G QSER1 Missense_Mutation p.L1296V 0.35 tolerated(0.6) benign(0.006) TCGA-DK-A2I1-01 11 33308267 33308267 C T HIPK3 Missense_Mutation p.H103Y 0.50 tolerated(1) benign(0.034) TCGA-DK-A2I1-01 11 47397226 47397226 C T SPI1 Missense_Mutation p.E35K 0.56 tolerated(0.06) benign(0.294) TCGA-DK-A2I1-01 11 59828720 59828720 G C MS4A3 Silent p.L29L 0.34 TCGA-DK-A2I1-01 11 60785351 60785351 C T CD6 Missense_Mutation p.S568L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 11 63320520 63320520 C T HRASLS2 Silent p.T135T 0.21 TCGA-DK-A2I1-01 11 64032897 64032897 C T PLCB3 Silent p.V986V 0.29 TCGA-DK-A2I1-01 11 67059207 67059207 C T ANKRD13D Silent p.F177F 0.14 TCGA-DK-A2I1-01 11 67232290 67232290 C T TMEM134 Silent p.L163L 0.15 TCGA-DK-A2I1-01 11 726970 726970 G T EPS8L2 Nonsense_Mutation p.E713* 0.38 TCGA-DK-A2I1-01 11 77919932 77919932 C G USP35 Silent p.L505L 0.36 TCGA-DK-A2I1-01 12 105151419 105151419 G A CHST11 Silent p.L299L 0.22 TCGA-DK-A2I1-01 12 108034099 108034099 C G BTBD11 Missense_Mutation p.L917V 0.14 tolerated(0.43) probably_damaging(0.999) TCGA-DK-A2I1-01 12 12251928 12251928 C G BCL2L14 3'UTR 0.34 TCGA-DK-A2I1-01 12 124968284 124968284 G C NCOR2 Nonsense_Mutation p.S90* 0.25 TCGA-DK-A2I1-01 12 31604993 31604993 C T DENND5B Missense_Mutation p.E504K 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A2I1-01 12 48061621 48061621 G C RPAP3 Missense_Mutation p.S576C 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-DK-A2I1-01 12 48533065 48533065 C G PFKM Intron 0.20 TCGA-DK-A2I1-01 12 49420060 49420060 C A KMT2D Missense_Mutation p.C5230F 0.42 unknown(0) TCGA-DK-A2I1-01 12 51467662 51467662 G A CSRNP2 Nonsense_Mutation p.R119* 0.35 TCGA-DK-A2I1-01 12 52639249 52639249 G C KRT7 Silent p.A346A 0.19 TCGA-DK-A2I1-01 12 52822425 52822425 C T KRT75 Missense_Mutation p.E380K 0.16 deleterious(0.02) possibly_damaging(0.85) TCGA-DK-A2I1-01 12 52943818 52943818 C G KRT71 Missense_Mutation p.K217N 0.16 deleterious(0) probably_damaging(0.967) TCGA-DK-A2I1-01 12 54675662 54675662 G A HNRNPA1 Missense_Mutation p.M72I 0.31 deleterious(0.05) possibly_damaging(0.562) TCGA-DK-A2I1-01 12 56113220 56113220 G A BLOC1S1 Intron 0.48 TCGA-DK-A2I1-01 12 57397508 57397508 G A ZBTB39 Silent p.F398F 0.42 TCGA-DK-A2I1-01 12 64868152 64868152 G A TBK1 Missense_Mutation p.R228H 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A2I1-01 12 6670928 6670928 C T NOP2 Missense_Mutation p.G403E 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A2I1-01 12 6692229 6692229 C G CHD4 Missense_Mutation p.E1371Q 0.21 deleterious(0.01) probably_damaging(0.913) TCGA-DK-A2I1-01 12 6692529 6692529 C G CHD4 Missense_Mutation p.E1299Q 0.20 tolerated(0.16) probably_damaging(0.913) TCGA-DK-A2I1-01 12 95475278 95475278 G C FGD6 3'UTR 0.16 TCGA-DK-A2I1-01 13 112722232 112722232 C A SOX1 Missense_Mutation p.A87D 0.19 deleterious(0) probably_damaging(0.965) TCGA-DK-A2I1-01 13 28239829 28239829 G A POLR1D Silent p.K36K 0.28 TCGA-DK-A2I1-01 13 31231851 31231851 C T USPL1 Missense_Mutation p.S546L 0.23 tolerated(0.11) benign(0.032) TCGA-DK-A2I1-01 13 38158988 38158988 C G POSTN Missense_Mutation p.E325Q 0.14 tolerated(0.14) probably_damaging(0.924) TCGA-DK-A2I1-01 13 42742882 42742882 C T DGKH Missense_Mutation p.S432L 0.20 tolerated(0.23) benign(0.023) TCGA-DK-A2I1-01 13 45971416 45971417 - TAA SLC25A30 In_Frame_Ins p.L270dup 0.42 TCGA-DK-A2I1-01 13 67799716 67799716 C T PCDH9 Missense_Mutation p.D953N 0.21 tolerated(0.12) possibly_damaging(0.777) TCGA-DK-A2I1-01 14 105207522 105207522 C - ADSSL1 Frame_Shift_Del p.K291Rfs*23 0.23 TCGA-DK-A2I1-01 14 21780097 21780097 G A RPGRIP1 Missense_Mutation p.D349N 0.32 tolerated(0.11) probably_damaging(1) TCGA-DK-A2I1-01 14 23884264 23884264 G A MYH7 Silent p.N1833N 0.60 TCGA-DK-A2I1-01 14 32562188 32562188 G A ARHGAP5 Silent p.K771K 0.21 TCGA-DK-A2I1-01 14 36147182 36147182 G C RALGAPA1 Missense_Mutation p.S1027C 0.30 deleterious(0.03) probably_damaging(0.957) TCGA-DK-A2I1-01 14 36219784 36219784 G A RALGAPA1 Silent p.V305V 0.32 TCGA-DK-A2I1-01 14 47120421 47120421 G A RPL10L Silent p.F173F 0.51 TCGA-DK-A2I1-01 14 57099827 57099827 C G TMEM260 Missense_Mutation p.F554L 0.62 tolerated(0.16) benign(0.039) TCGA-DK-A2I1-01 14 69256847 69256848 - C ZFP36L1 Frame_Shift_Ins p.I141Hfs*40 0.43 TCGA-DK-A2I1-01 15 41749923 41749923 T A RTF1 Missense_Mutation p.S171T 0.20 tolerated(0.16) benign(0.162) TCGA-DK-A2I1-01 15 43026452 43026452 C T CDAN1 Missense_Mutation p.R410Q 0.27 tolerated(0.56) probably_damaging(0.975) TCGA-DK-A2I1-01 15 43360220 43360220 C G UBR1 Missense_Mutation p.R225T 0.21 tolerated(1) benign(0.003) TCGA-DK-A2I1-01 15 55790547 55790547 G C DYX1C1 5'UTR 0.12 TCGA-DK-A2I1-01 15 58919991 58919991 G A ADAM10 Missense_Mutation p.S423F 0.23 deleterious(0) possibly_damaging(0.771) TCGA-DK-A2I1-01 15 65114716 65114716 C T PIF1 Missense_Mutation p.V218I 0.28 tolerated(0.12) benign(0.06) TCGA-DK-A2I1-01 15 66845521 66845521 T G LCTL Missense_Mutation p.K333T 0.19 deleterious(0) probably_damaging(0.925) TCGA-DK-A2I1-01 15 72533823 72533823 C T PARP6 Silent p.V622V 0.31 TCGA-DK-A2I1-01 15 77907318 77907318 G T LINGO1 Missense_Mutation p.L311I 0.18 tolerated(0.57) benign(0.001) TCGA-DK-A2I1-01 15 90169198 90169198 G C TICRR Silent p.R1836R 0.33 TCGA-DK-A2I1-01 16 103960 103960 G A SNRNP25 5'UTR 0.42 TCGA-DK-A2I1-01 16 15727580 15727580 C G KIAA0430 Missense_Mutation p.R376T 0.19 tolerated(0.07) possibly_damaging(0.891) TCGA-DK-A2I1-01 16 2256193 2256193 G A MLST8 Missense_Mutation p.R36Q 0.23 deleterious(0) probably_damaging(0.954) TCGA-DK-A2I1-01 16 23491968 23491968 C G GGA2 Missense_Mutation p.R335T 0.52 tolerated(0.38) benign(0.004) TCGA-DK-A2I1-01 16 2485829 2485829 G A CCNF Missense_Mutation p.E101K 0.24 deleterious(0) probably_damaging(0.981) TCGA-DK-A2I1-01 16 30510399 30510399 C T ITGAL Missense_Mutation p.R613W 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 16 3828129 3828129 C G CREBBP Missense_Mutation p.E666Q 0.62 probably_damaging(0.996) TCGA-DK-A2I1-01 16 58572154 58572154 G A CNOT1 Nonsense_Mutation p.R1718* 0.25 TCGA-DK-A2I1-01 16 68248320 68248320 C G NFATC3 Intron 0.45 TCGA-DK-A2I1-01 16 70284911 70284911 G T EXOSC6 3'UTR 0.73 TCGA-DK-A2I1-01 16 71602018 71602018 G A TAT 3'UTR 0.38 TCGA-DK-A2I1-01 16 780325 780325 C T NARFL 3'UTR 0.31 TCGA-DK-A2I1-01 16 82131777 82131777 C T HSD17B2 Silent p.I300I 0.42 TCGA-DK-A2I1-01 17 26646275 26646275 C G TMEM97 Missense_Mutation p.P4A 0.17 tolerated_low_confidence(0.59) benign(0.007) TCGA-DK-A2I1-01 17 26646322 26646322 C T TMEM97 Silent p.L19L 0.31 TCGA-DK-A2I1-01 17 26691931 26691931 G A CTB-96E2.2 Nonsense_Mutation p.Q126* 0.33 TCGA-DK-A2I1-01 17 33310224 33310224 G A LIG3 Missense_Mutation p.R67H 0.33 tolerated_low_confidence(0.15) benign(0.003) TCGA-DK-A2I1-01 17 33768156 33768156 G A SLFN13 Missense_Mutation p.L718F 0.13 tolerated(0.43) benign(0.046) TCGA-DK-A2I1-01 17 33902981 33902981 C T PEX12 Missense_Mutation p.M300I 0.19 tolerated(0.47) benign(0.003) TCGA-DK-A2I1-01 17 34964825 34964825 G C MRM1 Missense_Mutation p.E346Q 0.28 tolerated_low_confidence(0.08) benign(0.008) TCGA-DK-A2I1-01 17 37627781 37627781 C T CDK12 Silent p.L566L 0.21 TCGA-DK-A2I1-01 17 42828543 42828543 C T DBF4B Silent p.L590L 0.52 TCGA-DK-A2I1-01 17 42850284 42850284 C T ADAM11 Silent p.I246I 0.24 TCGA-DK-A2I1-01 17 42942371 42942371 C T EFTUD2 Silent p.T404T 0.17 TCGA-DK-A2I1-01 17 5041030 5041030 C G USP6 Missense_Mutation p.L304V 0.57 deleterious_low_confidence(0.02) benign(0.001) TCGA-DK-A2I1-01 17 56288082 56288082 G A MKS1 Missense_Mutation p.S321L 0.33 deleterious(0) probably_damaging(0.987) TCGA-DK-A2I1-01 17 60069976 60069976 C A MED13 Missense_Mutation p.D730Y 0.15 deleterious(0) benign(0.427) TCGA-DK-A2I1-01 17 62496163 62496163 G A DDX5 Nonsense_Mutation p.Q575* 0.40 TCGA-DK-A2I1-01 17 7339584 7339584 G C TMEM102 Missense_Mutation p.E96Q 0.54 tolerated(0.08) probably_damaging(0.934) TCGA-DK-A2I1-01 17 73702670 73702670 A T SAP30BP 3'UTR 0.38 TCGA-DK-A2I1-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.52 TCGA-DK-A2I1-01 17 8169232 8169232 A T PFAS Silent p.T866T 0.88 TCGA-DK-A2I1-01 17 8169233 8169233 G C PFAS Missense_Mutation p.A867P 0.87 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 17 8396109 8396109 C T MYH10 Silent p.Q1481Q 0.20 TCGA-DK-A2I1-01 18 32438313 32438313 G C DTNA Missense_Mutation p.E446Q 0.52 tolerated(0.15) possibly_damaging(0.642) TCGA-DK-A2I1-01 18 67614163 67614163 G T CD226 Missense_Mutation p.F63L 0.56 tolerated(0.39) benign(0.348) TCGA-DK-A2I1-01 18 67992477 67992477 G A SOCS6 Silent p.L191L 0.27 TCGA-DK-A2I1-01 19 13919937 13919937 C G ZSWIM4 Silent p.L305L 0.24 TCGA-DK-A2I1-01 19 15586931 15586931 C A PGLYRP2 Missense_Mutation p.D184Y 0.12 deleterious(0) possibly_damaging(0.855) TCGA-DK-A2I1-01 19 15587202 15587202 C G PGLYRP2 Silent p.L93L 0.12 TCGA-DK-A2I1-01 19 15587364 15587364 C T PGLYRP2 Silent p.Q39Q 0.13 TCGA-DK-A2I1-01 19 18895873 18895873 C G COMP Missense_Mutation p.E583Q 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A2I1-01 19 21558726 21558726 C G ZNF738 Silent p.P93P 0.33 TCGA-DK-A2I1-01 19 40329725 40329725 C T FBL Missense_Mutation p.G167R 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A2I1-01 19 41025918 41025918 G A SPTBN4 Missense_Mutation p.E1172K 0.26 deleterious(0) possibly_damaging(0.641) TCGA-DK-A2I1-01 19 43585142 43585142 C T PSG2 Silent p.L107L 0.12 TCGA-DK-A2I1-01 19 45296769 45296769 G A CBLC Silent p.E392E 0.36 TCGA-DK-A2I1-01 19 48866581 48866581 G C TMEM143 Missense_Mutation p.F77L 0.08 tolerated(0.43) possibly_damaging(0.827) TCGA-DK-A2I1-01 19 49362856 49362856 C T PLEKHA4 Missense_Mutation p.E188K 0.12 tolerated(0.06) benign(0.016) TCGA-DK-A2I1-01 19 50881040 50881040 G A NR1H2 Missense_Mutation p.E32K 0.16 tolerated(0.31) unknown(0) TCGA-DK-A2I1-01 19 52994634 52994634 G C ZNF578 5'UTR 0.20 TCGA-DK-A2I1-01 19 53209076 53209076 G C ZNF611 Nonsense_Mutation p.S411* 0.38 TCGA-DK-A2I1-01 19 54485522 54485522 G C CACNG8 Missense_Mutation p.E233Q 0.36 tolerated(0.32) probably_damaging(0.982) TCGA-DK-A2I1-01 19 549010 549010 G A GZMM Missense_Mutation p.S146N 0.25 tolerated(0.08) benign(0.272) TCGA-DK-A2I1-01 19 5784138 5784138 G C CTB-54O9.9 3'UTR 0.10 TCGA-DK-A2I1-01 19 9059205 9059205 C T MUC16 Missense_Mutation p.R9414K 0.33 unknown(0) TCGA-DK-A2I1-01 1 109793966 109793966 C T CELSR2 Missense_Mutation p.T422I 0.24 tolerated(0.13) benign(0.102) TCGA-DK-A2I1-01 1 111853046 111853046 C G CHIA 5'UTR 0.31 TCGA-DK-A2I1-01 1 11854538 11854538 C G MTHFR Silent p.L408L 0.15 TCGA-DK-A2I1-01 1 12941995 12941995 C G PRAMEF4 Missense_Mutation p.K185N 0.25 deleterious(0.05) probably_damaging(0.957) TCGA-DK-A2I1-01 1 148004641 148004641 G C NBPF14 Missense_Mutation p.I897M 0.41 deleterious(0.01) possibly_damaging(0.755) TCGA-DK-A2I1-01 1 149783524 149783524 C G HIST2H2BF Missense_Mutation p.V119L 0.50 deleterious_low_confidence(0.01) benign(0.053) TCGA-DK-A2I1-01 1 149906158 149906158 C T MTMR11 Silent p.E203E 0.38 TCGA-DK-A2I1-01 1 151341538 151341538 G A SELENBP1 Missense_Mutation p.S101F 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 1 151341620 151341620 G C SELENBP1 Missense_Mutation p.H74D 0.28 deleterious(0) probably_damaging(0.987) TCGA-DK-A2I1-01 1 153931023 153931023 C G CRTC2 5'UTR 0.65 TCGA-DK-A2I1-01 1 155188185 155188185 G C MTX1 3'Flank 0.29 TCGA-DK-A2I1-01 1 155931990 155931990 G A ARHGEF2 Silent p.L375L 0.36 TCGA-DK-A2I1-01 1 161599754 161599754 G C FCGR3B Missense_Mutation p.L81V 0.09 deleterious(0) probably_damaging(0.98) TCGA-DK-A2I1-01 1 204400890 204400891 GT AAC PIK3C2B Frame_Shift_Ins p.T1396Vfs*12 0.18 TCGA-DK-A2I1-01 1 206623769 206623769 C G SRGAP2 Nonsense_Mutation p.S627* 0.29 TCGA-DK-A2I1-01 1 220276871 220276871 G A IARS2 Missense_Mutation p.E345K 0.30 tolerated(0.31) benign(0.008) TCGA-DK-A2I1-01 1 235922510 235922510 C T LYST Missense_Mutation p.D2215N 0.32 tolerated_low_confidence(0.28) benign(0.05) TCGA-DK-A2I1-01 1 245772624 245772624 C T KIF26B Missense_Mutation p.P570S 0.38 deleterious(0) unknown(0) TCGA-DK-A2I1-01 1 247751675 247751675 G C OR2G2 Missense_Mutation p.R5T 0.24 deleterious(0.04) benign(0.079) TCGA-DK-A2I1-01 1 247751725 247751725 G C OR2G2 Missense_Mutation p.D22H 0.19 deleterious(0) probably_damaging(0.966) TCGA-DK-A2I1-01 1 247752001 247752001 G A OR2G2 Missense_Mutation p.E114K 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A2I1-01 1 247752462 247752462 G T OR2G2 Missense_Mutation p.K267N 0.22 tolerated(0.89) benign(0.029) TCGA-DK-A2I1-01 1 247752580 247752580 G T OR2G2 Missense_Mutation p.V307F 0.21 deleterious(0.03) unknown(0) TCGA-DK-A2I1-01 1 247752614 247752614 G C OR2G2 Nonstop_Mutation p.*318Sext*? 0.10 TCGA-DK-A2I1-01 1 247902330 247902330 C A OR14K1 Silent p.L138L 0.22 TCGA-DK-A2I1-01 1 39776610 39776610 G A MACF1 Missense_Mutation p.A1075T 0.42 benign(0.007) TCGA-DK-A2I1-01 1 43228147 43228147 C G LEPRE1 Splice_Site p.X156_splice 0.33 TCGA-DK-A2I1-01 1 43902989 43902989 C G SZT2 Missense_Mutation p.S2004C 0.19 deleterious(0) probably_damaging(0.988) TCGA-DK-A2I1-01 1 52530608 52530608 G C BTF3L4 Missense_Mutation p.E56Q 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-DK-A2I1-01 1 6704689 6704689 C T DNAJC11 Silent p.K342K 0.38 TCGA-DK-A2I1-01 20 2640192 2640192 C T IDH3B Silent p.K350K 0.14 TCGA-DK-A2I1-01 20 32255546 32255546 G A ACTL10 Silent p.K81K 0.16 TCGA-DK-A2I1-01 20 32256148 32256148 G C ACTL10 3'UTR 0.15 TCGA-DK-A2I1-01 20 44483824 44483824 G A ACOT8 Missense_Mutation p.S79F 0.56 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I1-01 20 44520016 44520016 G C CTSA Missense_Mutation p.E18Q 0.27 tolerated_low_confidence(0.06) probably_damaging(0.909) TCGA-DK-A2I1-01 20 44676624 44676624 G A SLC12A5 Missense_Mutation p.E661K 0.50 deleterious(0.02) probably_damaging(0.948) TCGA-DK-A2I1-01 20 5282740 5282740 G C PROKR2 Silent p.L367L 0.16 TCGA-DK-A2I1-01 20 62196310 62196310 C G HELZ2 Missense_Mutation p.E1289Q 0.50 tolerated(0.48) benign(0.063) TCGA-DK-A2I1-01 20 62196796 62196796 C T HELZ2 Missense_Mutation p.E1127K 0.53 tolerated(1) benign(0.002) TCGA-DK-A2I1-01 20 62196802 62196802 C T HELZ2 Missense_Mutation p.E1125K 0.53 tolerated(0.35) benign(0.004) TCGA-DK-A2I1-01 21 31768675 31768675 C G KRTAP13-1 Missense_Mutation p.P91A 0.20 deleterious(0) probably_damaging(0.982) TCGA-DK-A2I1-01 21 33032050 33032050 C T SOD1 5'UTR 0.44 TCGA-DK-A2I1-01 21 34883639 34883639 T C GART Missense_Mutation p.Q745R 0.35 tolerated(0.55) benign(0.002) TCGA-DK-A2I1-01 21 41505787 41505787 C G DSCAM Missense_Mutation p.E1186Q 0.15 deleterious(0.04) benign(0.356) TCGA-DK-A2I1-01 21 45104496 45104496 C T RRP1B Silent p.H318H 0.17 TCGA-DK-A2I1-01 21 45795809 45795809 G C TRPM2 Missense_Mutation p.D289H 0.27 deleterious(0) probably_damaging(0.95) TCGA-DK-A2I1-01 21 47693430 47693430 C T MCM3AP Missense_Mutation p.E690K 0.34 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I1-01 22 31859020 31859020 G A EIF4ENIF1 Nonsense_Mutation p.Q229* 0.23 TCGA-DK-A2I1-01 22 38061588 38061588 G T PDXP Nonsense_Mutation p.E201* 0.23 TCGA-DK-A2I1-01 22 38692803 38692803 C A CSNK1E Intron 0.29 TCGA-DK-A2I1-01 22 38692847 38692847 C G CSNK1E Intron 0.50 TCGA-DK-A2I1-01 22 39218743 39218743 G A NPTXR Silent p.V458V 0.14 TCGA-DK-A2I1-01 22 39421559 39421559 C G APOBEC3D Intron 0.28 TCGA-DK-A2I1-01 22 40343185 40343185 G C GRAP2 Missense_Mutation p.L25F 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 22 41077227 41077227 C T MCHR1 Silent p.I188I 0.49 TCGA-DK-A2I1-01 22 43606163 43606163 C T SCUBE1 Missense_Mutation p.E823K 0.42 deleterious(0.01) benign(0.314) TCGA-DK-A2I1-01 22 43606234 43606234 C T SCUBE1 Missense_Mutation p.G799D 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A2I1-01 2 114399705 114399705 G A RABL2A Silent p.%3D 0.21 TCGA-DK-A2I1-01 2 133543046 133543046 G C NCKAP5 Silent p.L446L 0.24 TCGA-DK-A2I1-01 2 165952024 165952024 C G SCN3A Missense_Mutation p.K1476N 0.19 deleterious(0) benign(0.197) TCGA-DK-A2I1-01 2 185803781 185803781 C G ZNF804A 3'UTR 0.24 TCGA-DK-A2I1-01 2 191524441 191524441 C T NAB1 Missense_Mutation p.S180F 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 2 219029263 219029263 G A CXCR1 Silent p.F224F 0.22 TCGA-DK-A2I1-01 2 231947596 231947596 G C PSMD1 Splice_Site p.X472_splice 0.23 TCGA-DK-A2I1-01 2 234652280 234652280 C T UGT1A10 Intron 0.25 TCGA-DK-A2I1-01 2 238726844 238726844 A G RBM44 Missense_Mutation p.T429A 0.25 tolerated(0.34) benign(0.003) TCGA-DK-A2I1-01 2 42282449 42282449 G C PKDCC Missense_Mutation p.E380Q 0.16 tolerated(0.09) benign(0.201) TCGA-DK-A2I1-01 2 99182196 99182196 C G INPP4A Missense_Mutation p.S754C 0.39 tolerated(0.07) possibly_damaging(0.834) TCGA-DK-A2I1-01 3 111603142 111603142 C T PHLDB2 Missense_Mutation p.S73F 0.31 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-DK-A2I1-01 3 113114608 113114608 G C WDR52 Missense_Mutation p.P627A 0.21 deleterious(0.01) benign(0.011) TCGA-DK-A2I1-01 3 113505209 113505209 G C ATP6V1A Missense_Mutation p.R232T 0.48 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I1-01 3 11880710 11880710 G A TAMM41 Nonsense_Mutation p.R133* 0.39 TCGA-DK-A2I1-01 3 119886885 119886885 G T GPR156 Missense_Mutation p.S480Y 0.15 tolerated(0.68) benign(0.03) TCGA-DK-A2I1-01 3 120315335 120315335 G A NDUFB4 Silent p.L43L 0.55 TCGA-DK-A2I1-01 3 142122729 142122729 C T XRN1 Silent p.L662L 0.11 TCGA-DK-A2I1-01 3 15115948 15115948 G A ZFYVE20 Missense_Mutation p.R566C 0.20 tolerated_low_confidence(0.1) benign(0.003) TCGA-DK-A2I1-01 3 158386887 158386887 G A LXN Silent p.L135L 0.13 TCGA-DK-A2I1-01 3 171455826 171455826 C T PLD1 Missense_Mutation p.E6K 0.17 tolerated_low_confidence(0.18) benign(0.004) TCGA-DK-A2I1-01 3 197476822 197476822 C T FYTTD1 5'UTR 0.24 TCGA-DK-A2I1-01 3 31921292 31921292 G A OSBPL10 Silent p.I104I 0.18 TCGA-DK-A2I1-01 3 42678621 42678621 G C NKTR Missense_Mutation p.M475I 0.23 tolerated_low_confidence(0.11) unknown(0) TCGA-DK-A2I1-01 3 42845680 42845680 C G HIGD1A Missense_Mutation p.E2Q 0.38 tolerated_low_confidence(0.35) benign(0) TCGA-DK-A2I1-01 3 440699 440699 G A CHL1 Splice_Site p.X1085_splice 0.05 TCGA-DK-A2I1-01 3 46621544 46621544 G A TDGF1 Missense_Mutation p.G148S 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A2I1-01 3 48510922 48510922 G A SHISA5 Nonsense_Mutation p.Q161* 0.15 TCGA-DK-A2I1-01 3 49405951 49405951 G T RHOA Missense_Mutation p.Q63K 0.20 deleterious(0.01) benign(0.176) TCGA-DK-A2I1-01 3 52473745 52473745 C T SEMA3G Missense_Mutation p.G473D 0.23 tolerated(0.42) benign(0.008) TCGA-DK-A2I1-01 3 52558849 52558849 C T NT5DC2 Missense_Mutation p.E466K 0.19 deleterious(0) possibly_damaging(0.872) TCGA-DK-A2I1-01 3 9424928 9424928 C T THUMPD3 Silent p.I390I 0.12 TCGA-DK-A2I1-01 3 9877038 9877038 C T TTLL3 Silent p.P871P 0.21 TCGA-DK-A2I1-01 4 104070087 104070087 C A CENPE Nonsense_Mutation p.E1253* 0.30 TCGA-DK-A2I1-01 4 122828620 122828620 G T TRPC3 Missense_Mutation p.A632E 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I1-01 4 128685476 128685476 G C SLC25A31 Missense_Mutation p.D147H 0.23 deleterious(0) probably_damaging(0.993) TCGA-DK-A2I1-01 4 148575529 148575529 G C PRMT10 Missense_Mutation p.Q507E 0.27 tolerated(0.24) benign(0.265) TCGA-DK-A2I1-01 4 160264207 160264207 C T RAPGEF2 Nonsense_Mutation p.Q838* 0.31 TCGA-DK-A2I1-01 4 164050300 164050300 G C NAF1 Missense_Mutation p.Q412E 0.20 deleterious(0.05) benign(0.286) TCGA-DK-A2I1-01 4 169197306 169197306 C T DDX60 Missense_Mutation p.A669T 0.16 deleterious(0.01) possibly_damaging(0.881) TCGA-DK-A2I1-01 4 185552257 185552257 C G CASP3 Missense_Mutation p.D180H 0.37 deleterious(0.01) benign(0.245) TCGA-DK-A2I1-01 4 20734378 20734378 C T KCNIP4 Missense_Mutation p.D190N 0.28 deleterious(0.02) probably_damaging(0.949) TCGA-DK-A2I1-01 4 56768579 56768579 G A EXOC1 Missense_Mutation p.A803T 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A2I1-01 4 66361157 66361157 C T EPHA5 Missense_Mutation p.E339K 0.08 tolerated(0.14) probably_damaging(0.952) TCGA-DK-A2I1-01 4 77926942 77926942 G A SEPT11 Missense_Mutation p.D111N 0.24 deleterious(0.01) benign(0.3) TCGA-DK-A2I1-01 4 845581 845581 C T GAK Silent p.V1155V 0.28 TCGA-DK-A2I1-01 4 86915953 86915953 C A ARHGAP24 Silent p.P382P 0.37 TCGA-DK-A2I1-01 4 99363176 99363176 C G RAP1GDS1 Missense_Mutation p.L579V 0.31 tolerated(0.15) benign(0.023) TCGA-DK-A2I1-01 5 11110994 11110994 C G CTNND2 Missense_Mutation p.K813N 0.20 deleterious(0) possibly_damaging(0.814) TCGA-DK-A2I1-01 5 131927031 131927031 A G RAD50 Missense_Mutation p.Q523R 0.06 tolerated(0.11) benign(0.118) TCGA-DK-A2I1-01 5 13913930 13913930 G A DNAH5 Silent p.I486I 0.47 TCGA-DK-A2I1-01 5 142500655 142500655 C G ARHGAP26 Missense_Mutation p.I547M 0.35 tolerated(0.69) benign(0.103) TCGA-DK-A2I1-01 5 33938041 33938041 C T RXFP3 Missense_Mutation p.A399V 0.29 deleterious(0.05) benign(0.103) TCGA-DK-A2I1-01 5 40835349 40835349 C T RPL37 5'UTR 0.53 TCGA-DK-A2I1-01 5 41181565 41181566 - A C6 Frame_Shift_Ins p.G275Wfs*17 0.09 TCGA-DK-A2I1-01 5 5239847 5239847 G A ADAMTS16 Missense_Mutation p.E778K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A2I1-01 5 54398548 54398548 C T GZMA Missense_Mutation p.S13L 0.38 tolerated(0.44) benign(0.026) TCGA-DK-A2I1-01 5 55094377 55094377 C G DDX4 Silent p.L531L 0.35 TCGA-DK-A2I1-01 5 76351402 76351402 G A AGGF1 Missense_Mutation p.R566Q 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A2I1-01 5 94876439 94876439 G A TTC37 Silent p.F166F 0.28 TCGA-DK-A2I1-01 6 123100956 123100956 G A FABP7 Missense_Mutation p.C6Y 0.08 deleterious(0.01) benign(0.244) TCGA-DK-A2I1-01 6 131571598 131571598 C T AKAP7 Intron 0.29 TCGA-DK-A2I1-01 6 136600905 136600905 A G BCLAF1 Missense_Mutation p.Y34H 0.28 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I1-01 6 144179139 144179139 G C LTV1 Missense_Mutation p.E264Q 0.65 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I1-01 6 160211569 160211569 G A MRPL18 5'UTR 0.31 TCGA-DK-A2I1-01 6 26158505 26158505 G C HIST1H2BD Missense_Mutation p.E36D 0.17 deleterious_low_confidence(0.02) benign(0.001) TCGA-DK-A2I1-01 6 33248750 33248750 G C WDR46 Missense_Mutation p.S377C 0.24 deleterious(0) benign(0.351) TCGA-DK-A2I1-01 6 38810677 38810677 G C DNAH8 Missense_Mutation p.E1398Q 0.76 probably_damaging(0.951) TCGA-DK-A2I1-01 6 42224512 42224512 G A TRERF1 Missense_Mutation p.S845F 0.60 tolerated(0.08) possibly_damaging(0.485) TCGA-DK-A2I1-01 6 42224558 42224558 G C TRERF1 Missense_Mutation p.L830V 0.68 tolerated(0.05) possibly_damaging(0.694) TCGA-DK-A2I1-01 6 43038427 43038427 C G KLC4 Intron 0.50 TCGA-DK-A2I1-01 6 43593155 43593155 G A GTPBP2 Missense_Mutation p.S217F 0.30 deleterious(0) probably_damaging(0.928) TCGA-DK-A2I1-01 6 53370630 53370630 C G GCLC Missense_Mutation p.G421R 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A2I1-01 6 87970067 87970067 C T ZNF292 Silent p.D2240D 0.29 TCGA-DK-A2I1-01 6 90340347 90340347 C T ANKRD6 Missense_Mutation p.A603V 0.22 tolerated(0.22) benign(0.003) TCGA-DK-A2I1-01 7 100677336 100677336 C A MUC17 Missense_Mutation p.S880Y 0.33 unknown(0) TCGA-DK-A2I1-01 7 102665560 102665560 C T FBXL13 Missense_Mutation p.E149K 0.24 tolerated(0.76) benign(0.002) TCGA-DK-A2I1-01 7 102988224 102988224 C T PSMC2 Silent p.I22I 0.21 TCGA-DK-A2I1-01 7 103198485 103198485 C T RELN Silent p.R1847R 0.28 TCGA-DK-A2I1-01 7 105098242 105098242 G A PUS7 Missense_Mutation p.R661C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A2I1-01 7 127231016 127231016 G A ARF5 Splice_Site p.X111_splice 0.20 TCGA-DK-A2I1-01 7 133502139 133502139 G C EXOC4 Missense_Mutation p.E526Q 0.36 tolerated(0.49) possibly_damaging(0.556) TCGA-DK-A2I1-01 7 149129613 149129613 G A ZNF777 Missense_Mutation p.R584W 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-DK-A2I1-01 7 154876231 154876231 C A HTR5A 3'UTR 0.10 TCGA-DK-A2I1-01 7 27239669 27239669 G - HOXA13 Frame_Shift_Del p.R10Afs*81 0.10 TCGA-DK-A2I1-01 7 45650061 45650061 C G ADCY1 Missense_Mutation p.F291L 0.30 deleterious(0.01) benign(0.302) TCGA-DK-A2I1-01 7 48004823 48004823 G C HUS1 3'UTR 0.43 TCGA-DK-A2I1-01 7 64437381 64437381 C G ZNF117 3'UTR 0.14 TCGA-DK-A2I1-01 7 66270179 66270179 C T KCTD7 Silent p.I291I 0.18 TCGA-DK-A2I1-01 7 82580207 82580207 C T PCLO Missense_Mutation p.E3233K 0.30 unknown(0) TCGA-DK-A2I1-01 7 92978099 92978099 C T CCDC132 Missense_Mutation p.L762F 0.31 deleterious(0) probably_damaging(0.993) TCGA-DK-A2I1-01 7 99306789 99306789 C G CYP3A7 Missense_Mutation p.E374D 0.14 tolerated(0.2) benign(0.043) TCGA-DK-A2I1-01 7 99808634 99808634 G A STAG3 Missense_Mutation p.G1080E 0.29 tolerated(0.09) benign(0.002) TCGA-DK-A2I1-01 8 121290778 121290778 G C COL14A1 Missense_Mutation p.D1148H 0.51 deleterious(0) probably_damaging(0.992) TCGA-DK-A2I1-01 8 122626946 122626946 C T HAS2 Nonsense_Mutation p.W354* 0.19 TCGA-DK-A2I1-01 8 142200469 142200469 G A DENND3 Missense_Mutation p.R1031Q 0.23 tolerated(0.29) benign(0.034) TCGA-DK-A2I1-01 8 144732979 144732979 C G ZNF623 Missense_Mutation p.H313D 0.44 deleterious(0) probably_damaging(0.961) TCGA-DK-A2I1-01 8 144993101 144993101 C G PLEC Missense_Mutation p.E3767Q 0.16 probably_damaging(0.999) TCGA-DK-A2I1-01 8 144994322 144994322 C A PLEC Nonsense_Mutation p.E3360* 0.14 TCGA-DK-A2I1-01 8 31498021 31498021 G A NRG1 Missense_Mutation p.G27D 0.20 deleterious(0) probably_damaging(0.97) TCGA-DK-A2I1-01 8 39806766 39806766 C G IDO2 Missense_Mutation p.L41V 0.28 tolerated(0.46) benign(0.359) TCGA-DK-A2I1-01 8 48749789 48749789 G A PRKDC Missense_Mutation p.S2581L 0.10 probably_damaging(0.997) TCGA-DK-A2I1-01 8 82593018 82593018 C A IMPA1 Missense_Mutation p.V81L 0.09 tolerated(0.39) benign(0.007) TCGA-DK-A2I1-01 9 101800955 101800955 G C COL15A1 Missense_Mutation p.L805F 0.14 tolerated(0.13) benign(0.004) TCGA-DK-A2I1-01 9 102861077 102861077 G A ERP44 Missense_Mutation p.L16F 0.13 tolerated(0.14) benign(0) TCGA-DK-A2I1-01 9 130082991 130082991 C T GARNL3 Intron 0.14 TCGA-DK-A2I1-01 9 130712850 130712850 G C FAM102A Intron 0.08 TCGA-DK-A2I1-01 9 131367341 131367341 G A SPTAN1 Missense_Mutation p.E1250K 0.11 tolerated(0.11) benign(0.07) TCGA-DK-A2I1-01 9 133945103 133945103 G A LAMC3 Missense_Mutation p.E979K 0.50 tolerated(0.07) benign(0.072) TCGA-DK-A2I1-01 9 137591828 137591828 C T COL5A1 Silent p.V117V 0.13 TCGA-DK-A2I1-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.09 TCGA-DK-A2I1-01 9 2192785 2192785 C A SMARCA2 3'UTR 0.11 TCGA-DK-A2I1-01 9 33386406 33386406 G C AQP7 Missense_Mutation p.F134L 0.10 deleterious(0) probably_damaging(0.963) TCGA-DK-A2I1-01 9 33387057 33387057 G C AQP7 Missense_Mutation p.L60V 0.09 deleterious(0.04) possibly_damaging(0.458) TCGA-DK-A2I1-01 9 72047530 72047530 G A APBA1 Silent p.I788I 0.90 TCGA-DK-A2I1-01 9 8500790 8500790 C T PTPRD Missense_Mutation p.E698K 0.47 tolerated(0.19) benign(0) TCGA-DK-A2I1-01 9 85677430 85677430 G T RASEF Nonsense_Mutation p.S118* 0.41 TCGA-DK-A2I1-01 9 99099051 99099051 G T SLC35D2 Missense_Mutation p.Q234K 0.17 tolerated(0.61) benign(0.005) TCGA-DK-A2I1-01 X 122756965 122756965 C T THOC2 Missense_Mutation p.E1225K 0.20 tolerated(0.18) possibly_damaging(0.64) TCGA-DK-A2I1-01 X 129208117 129208117 C G ELF4 Splice_Site p.X83_splice 0.23 TCGA-DK-A2I1-01 X 133549106 133549106 G C PHF6 Missense_Mutation p.D264H 0.39 deleterious(0.02) probably_damaging(1) TCGA-DK-A2I1-01 X 137939732 137939732 G A FGF13 Silent p.H53H 0.30 TCGA-DK-A2I1-01 X 150869180 150869180 G A PRRG3 Missense_Mutation p.R124H 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-DK-A2I1-01 X 1531805 1531805 G A ASMTL Intron 0.07 TCGA-DK-A2I1-01 X 153206997 153206997 G A RENBP Silent p.S293S 0.21 TCGA-DK-A2I1-01 X 19482501 19482501 G A MAP3K15 Silent p.F183F 0.30 TCGA-DK-A2I1-01 X 47445134 47445134 G C TIMP1 Intron 0.31 TCGA-DK-A2I1-01 X 51075911 51075911 G A NUDT10 Missense_Mutation p.E32K 0.23 deleterious(0.04) benign(0.034) TCGA-DK-A2I1-01 X 70148785 70148785 C T SLC7A3 Silent p.K146K 0.16 TCGA-DK-A2I2-01 10 15255261 15255261 C T FAM171A1 Missense_Mutation p.E776K 0.17 tolerated(0.26) benign(0.009) TCGA-DK-A2I2-01 10 21805233 21805233 C T SKIDA1 Missense_Mutation p.D507N 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A2I2-01 10 22828982 22828982 T A PIP4K2A Missense_Mutation p.Y353F 0.28 deleterious(0.02) probably_damaging(0.914) TCGA-DK-A2I2-01 10 29600117 29600117 T C LYZL1 3'UTR 0.34 TCGA-DK-A2I2-01 10 75457528 75457528 G A AGAP5 5'UTR 0.09 TCGA-DK-A2I2-01 10 93952323 93952323 G C CPEB3 Missense_Mutation p.T359S 0.23 tolerated(0.16) benign(0.082) TCGA-DK-A2I2-01 11 117667803 117667803 G C DSCAML1 Missense_Mutation p.L58V 0.05 tolerated_low_confidence(0.13) unknown(0) TCGA-DK-A2I2-01 11 14990325 14990325 T C CALCA 3'UTR 0.13 TCGA-DK-A2I2-01 11 36615460 36615460 C G RAG2 Missense_Mutation p.E87Q 0.05 tolerated(0.05) benign(0.291) TCGA-DK-A2I2-01 11 44135765 44135765 G C EXT2 Silent p.T252T 0.06 TCGA-DK-A2I2-01 11 56128191 56128191 A G OR8J1 Missense_Mutation p.I157V 0.10 tolerated(0.19) benign(0.006) TCGA-DK-A2I2-01 11 57081245 57081245 G A TNKS1BP1 Missense_Mutation p.P306L 0.12 tolerated(0.18) benign(0.001) TCGA-DK-A2I2-01 11 59554605 59554605 G C STX3 Missense_Mutation p.E70D 0.11 tolerated(1) benign(0.06) TCGA-DK-A2I2-01 11 64000221 64000221 C T DNAJC4 Silent p.S137S 0.11 TCGA-DK-A2I2-01 11 72946402 72946402 A G P2RY2 3'UTR 0.18 TCGA-DK-A2I2-01 11 73073578 73073578 C T ARHGEF17 Missense_Mutation p.L1599F 0.15 tolerated(0.14) benign(0.155) TCGA-DK-A2I2-01 11 93796804 93796804 G C HEPHL1 Silent p.L182L 0.09 TCGA-DK-A2I2-01 11 94911061 94911061 C T SESN3 Missense_Mutation p.E357K 0.24 deleterious(0) benign(0.217) TCGA-DK-A2I2-01 12 100452896 100452896 T A UHRF1BP1L Missense_Mutation p.D720V 0.10 deleterious(0) probably_damaging(0.935) TCGA-DK-A2I2-01 12 129432001 129432001 G A GLT1D1 Missense_Mutation p.E180K 0.14 deleterious(0) possibly_damaging(0.486) TCGA-DK-A2I2-01 12 26818878 26818878 G A ITPR2 Nonsense_Mutation p.Q506* 0.11 TCGA-DK-A2I2-01 12 6638150 6638150 C T NCAPD2 Missense_Mutation p.R1173C 0.16 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I2-01 12 9020633 9020633 C T A2ML1 Nonsense_Mutation p.Q1305* 0.10 TCGA-DK-A2I2-01 13 113795343 113795343 G C F10 Missense_Mutation p.G161R 0.07 tolerated(0.09) possibly_damaging(0.769) TCGA-DK-A2I2-01 13 70681399 70681399 G A KLHL1 Silent p.L145L 0.15 TCGA-DK-A2I2-01 14 20876196 20876196 G C TEP1 Missense_Mutation p.H135D 0.08 tolerated_low_confidence(0.1) benign(0.002) TCGA-DK-A2I2-01 14 24836320 24836320 C T NFATC4 Silent p.V20V 0.12 TCGA-DK-A2I2-01 14 31077178 31077178 C G G2E3 Missense_Mutation p.S468C 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A2I2-01 14 50779729 50779730 AC - ATP5S 5'UTR 0.10 TCGA-DK-A2I2-01 14 69262546 69262546 G C ZFP36L1 5'Flank 0.09 TCGA-DK-A2I2-01 15 44061801 44061801 A G PDIA3 Missense_Mutation p.H408R 0.13 deleterious(0) probably_damaging(0.993) TCGA-DK-A2I2-01 15 48443319 48443319 C T MYEF2 Missense_Mutation p.M452I 0.16 tolerated(0.14) benign(0.191) TCGA-DK-A2I2-01 15 54586192 54586192 T C UNC13C Silent p.D1306D 0.19 TCGA-DK-A2I2-01 16 19058553 19058553 C T TMC7 Silent p.I574I 0.11 TCGA-DK-A2I2-01 16 22269882 22269882 C T EEF2K Missense_Mutation p.S366F 0.29 deleterious(0) probably_damaging(0.974) TCGA-DK-A2I2-01 16 30080666 30080666 G A ALDOA Missense_Mutation p.D248N 0.11 tolerated(0.06) benign(0.137) TCGA-DK-A2I2-01 16 47162452 47162452 C T NETO2 Missense_Mutation p.D89N 0.10 tolerated(0.06) possibly_damaging(0.6) TCGA-DK-A2I2-01 16 67263612 67263612 G A FHOD1 Missense_Mutation p.T1141M 0.14 deleterious(0) probably_damaging(0.991) TCGA-DK-A2I2-01 16 84096944 84096944 G C MBTPS1 Missense_Mutation p.D846E 0.03 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I2-01 16 88039762 88039762 C G BANP Missense_Mutation p.H174Q 0.11 tolerated_low_confidence(0.12) benign(0.043) TCGA-DK-A2I2-01 17 10614321 10614321 G A ADPRM Missense_Mutation p.E297K 0.13 deleterious(0.01) possibly_damaging(0.852) TCGA-DK-A2I2-01 17 15989705 15989705 C G NCOR1 Missense_Mutation p.R1023P 0.13 possibly_damaging(0.893) TCGA-DK-A2I2-01 17 38244572 38244572 C T THRA Silent p.Y267Y 0.12 TCGA-DK-A2I2-01 17 38792242 38792247 TGTCTC - SMARCE1 In_Frame_Del p.R160_Q161del 0.22 TCGA-DK-A2I2-01 17 41331419 41331419 C G NBR1 Missense_Mutation p.I58M 0.07 deleterious(0.02) benign(0.292) TCGA-DK-A2I2-01 17 62254697 62254697 G T TEX2 Silent p.L860L 0.14 TCGA-DK-A2I2-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A2I2-01 17 7749991 7749991 C T KDM6B Missense_Mutation p.S215L 0.15 unknown(0) TCGA-DK-A2I2-01 17 78319411 78319411 A G RNF213 Missense_Mutation p.K2426E 0.13 probably_damaging(0.998) TCGA-DK-A2I2-01 18 59768367 59768367 C T PIGN Missense_Mutation p.S673N 0.07 tolerated(0.07) possibly_damaging(0.893) TCGA-DK-A2I2-01 18 74963033 74963033 T C GALR1 Missense_Mutation p.F177L 0.25 tolerated(0.36) benign(0.007) TCGA-DK-A2I2-01 19 1080434 1080434 C T HMHA1 Intron 0.18 TCGA-DK-A2I2-01 19 11094811 11094811 C T SMARCA4 5'UTR 0.10 TCGA-DK-A2I2-01 19 42383361 42383361 T G CD79A Splice_Site p.X127_splice 0.43 TCGA-DK-A2I2-01 19 4445342 4445342 C T UBXN6 3'UTR 0.11 TCGA-DK-A2I2-01 19 4447594 4447594 C A UBXN6 Nonsense_Mutation p.E190* 0.06 TCGA-DK-A2I2-01 19 44982133 44982134 CT - ZNF180 Frame_Shift_Del p.R188Sfs*5 0.08 TCGA-DK-A2I2-01 19 58864234 58864234 G A A1BG Intron 0.07 TCGA-DK-A2I2-01 19 58868604 58868604 G A ZNF497 Missense_Mutation p.P133L 0.13 deleterious(0.01) probably_damaging(0.956) TCGA-DK-A2I2-01 1 101705363 101705363 C G S1PR1 Missense_Mutation p.L275V 0.13 deleterious(0.04) possibly_damaging(0.777) TCGA-DK-A2I2-01 1 10527261 10527261 C T DFFA Missense_Mutation p.E143K 0.14 deleterious(0.03) possibly_damaging(0.654) TCGA-DK-A2I2-01 1 112998771 112998771 A G CTTNBP2NL Silent p.E219E 0.12 TCGA-DK-A2I2-01 1 144859924 144859924 G A PDE4DIP Silent p.L2054L 0.08 TCGA-DK-A2I2-01 1 152284039 152284039 C T FLG Missense_Mutation p.G1108E 0.17 probably_damaging(0.931) TCGA-DK-A2I2-01 1 153921053 153921053 C G CRTC2 Missense_Mutation p.G581A 0.06 tolerated(0.72) probably_damaging(0.991) TCGA-DK-A2I2-01 1 153921067 153921067 A G CRTC2 Silent p.P576P 0.08 TCGA-DK-A2I2-01 1 155721969 155721969 C T GON4L Silent p.V2084V 0.10 TCGA-DK-A2I2-01 1 2077537 2077537 G C PRKCZ Missense_Mutation p.E208D 0.05 tolerated(0.62) benign(0.001) TCGA-DK-A2I2-01 1 209799289 209799289 G C LAMB3 Silent p.T560T 0.08 TCGA-DK-A2I2-01 1 227316871 227316871 G A CDC42BPA Silent p.S484S 0.10 TCGA-DK-A2I2-01 1 248344190 248344190 C T OR2M2 Silent p.F301F 0.16 TCGA-DK-A2I2-01 1 29379626 29379626 C A EPB41 Silent p.V549V 0.24 TCGA-DK-A2I2-01 1 33292110 33292110 C G S100PBP Missense_Mutation p.S137C 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-DK-A2I2-01 1 44804820 44804820 C T ERI3 Missense_Mutation p.G129D 0.07 tolerated(0.14) possibly_damaging(0.541) TCGA-DK-A2I2-01 1 89729593 89729593 C T GBP5 Silent p.R396R 0.10 TCGA-DK-A2I2-01 20 20279020 20279020 G A C20orf26 Missense_Mutation p.D1138N 0.13 deleterious(0.03) possibly_damaging(0.684) TCGA-DK-A2I2-01 20 2639120 2639120 C T IDH3B 3'UTR 0.14 TCGA-DK-A2I2-01 20 2639347 2639347 G A IDH3B 3'UTR 0.10 TCGA-DK-A2I2-01 20 30917984 30918003 GGACCACCAGAGACTATGAG - KIF3B Frame_Shift_Del p.T671Sfs*18 0.26 TCGA-DK-A2I2-01 20 50224073 50224073 G A ATP9A Silent p.I932I 0.21 TCGA-DK-A2I2-01 20 56139562 56139562 C T PCK1 Missense_Mutation p.S404L 0.10 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I2-01 20 62168507 62168507 C T PTK6 Missense_Mutation p.G54D 0.36 deleterious(0.02) benign(0.404) TCGA-DK-A2I2-01 21 42823170 42823170 G A MX1 Silent p.K503K 0.33 TCGA-DK-A2I2-01 21 45877312 45877312 G A LRRC3 3'UTR 0.10 TCGA-DK-A2I2-01 22 31839041 31839041 T C EIF4ENIF1 Missense_Mutation p.M705V 0.25 deleterious(0) probably_damaging(0.949) TCGA-DK-A2I2-01 2 189904075 189904075 C T COL5A2 Missense_Mutation p.R1283H 0.11 unknown(0) TCGA-DK-A2I2-01 2 233198629 233198629 C T DIS3L2 Missense_Mutation p.T697I 0.15 deleterious(0) probably_damaging(0.989) TCGA-DK-A2I2-01 2 29917721 29917721 G C ALK Missense_Mutation p.P316R 0.24 tolerated(0.1) benign(0.037) TCGA-DK-A2I2-01 2 69172373 69172373 A G GKN2 3'UTR 0.10 TCGA-DK-A2I2-01 2 97530101 97530101 C T SEMA4C Silent p.S327S 0.09 TCGA-DK-A2I2-01 3 108565976 108565976 G A TRAT1 Missense_Mutation p.E72K 0.14 deleterious(0.01) possibly_damaging(0.853) TCGA-DK-A2I2-01 3 130311550 130311550 G T COL6A6 Missense_Mutation p.G1452V 0.18 deleterious(0) probably_damaging(0.971) TCGA-DK-A2I2-01 3 135721343 135721343 G A PPP2R3A Missense_Mutation p.E335K 0.09 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DK-A2I2-01 3 138478132 138478132 C T PIK3CB Nonsense_Mutation p.W18* 0.10 TCGA-DK-A2I2-01 3 155571496 155571496 G A SLC33A1 Silent p.L97L 0.09 TCGA-DK-A2I2-01 3 158408110 158408110 G A GFM1 Missense_Mutation p.D690N 0.10 deleterious(0.01) benign(0.016) TCGA-DK-A2I2-01 3 179301231 179301231 C T ACTL6A Missense_Mutation p.P373S 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A2I2-01 3 20225184 20225184 C T SGOL1 Silent p.L85L 0.09 TCGA-DK-A2I2-01 3 36872485 36872485 T C TRANK1 Silent p.V2819V 0.23 TCGA-DK-A2I2-01 3 49213182 49213182 C T KLHDC8B Missense_Mutation p.A338V 0.14 tolerated(0.05) possibly_damaging(0.494) TCGA-DK-A2I2-01 4 1374711 1374711 G A UVSSA Missense_Mutation p.R599Q 0.21 tolerated(0.47) benign(0.036) TCGA-DK-A2I2-01 4 153244124 153244124 G C FBXW7 Nonsense_Mutation p.S678* 0.48 TCGA-DK-A2I2-01 4 15444248 15444248 C T C1QTNF7 Missense_Mutation p.S239L 0.38 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I2-01 4 1643302 1643302 G A FAM53A Silent p.L305L 0.12 TCGA-DK-A2I2-01 4 1730206 1730206 G C TACC3 Missense_Mutation p.E359D 0.06 deleterious(0.02) benign(0.142) TCGA-DK-A2I2-01 4 173269794 173269794 G A GALNTL6 Silent p.G169G 0.30 TCGA-DK-A2I2-01 4 2242103 2242103 G A HAUS3 Missense_Mutation p.P191S 0.16 deleterious(0.01) benign(0.079) TCGA-DK-A2I2-01 4 2831314 2831314 C T SH3BP2 Silent p.T284T 0.11 TCGA-DK-A2I2-01 4 2934086 2934086 C A MFSD10 Nonsense_Mutation p.E229* 0.24 TCGA-DK-A2I2-01 4 42596348 42596348 C A ATP8A1 Intron 0.11 TCGA-DK-A2I2-01 4 94006340 94006340 C G GRID2 Missense_Mutation p.R147G 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-DK-A2I2-01 5 1253819 1253819 G A TERT 3'UTR 0.10 TCGA-DK-A2I2-01 5 132736544 132736544 G A FSTL4 Missense_Mutation p.P99S 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A2I2-01 5 137721755 137721756 - A KDM3B Frame_Shift_Ins p.R276Kfs*21 0.13 TCGA-DK-A2I2-01 5 140725479 140725479 C T PCDHGA3 Missense_Mutation p.R627C 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.782) TCGA-DK-A2I2-01 5 177673290 177673290 C T COL23A1 Missense_Mutation p.G460S 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A2I2-01 5 86645051 86645051 C G RASA1 Missense_Mutation p.L375V 0.19 deleterious(0) probably_damaging(0.954) TCGA-DK-A2I2-01 6 144508445 144508445 C G STX11 Silent p.L227L 0.18 TCGA-DK-A2I2-01 6 26200019 26200019 C G HIST1H2BF Missense_Mutation p.A78G 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.872) TCGA-DK-A2I2-01 6 36168333 36168333 G A BRPF3 Silent p.K78K 0.11 TCGA-DK-A2I2-01 6 4117578 4117578 C T ECI2 Nonsense_Mutation p.W331* 0.38 TCGA-DK-A2I2-01 6 54095691 54095691 C T MLIP Silent p.L431L 0.15 TCGA-DK-A2I2-01 6 57013396 57013396 C T ZNF451 Missense_Mutation p.S838L 0.38 deleterious_low_confidence(0.04) benign(0.005) TCGA-DK-A2I2-01 7 103155884 103155884 C T RELN Missense_Mutation p.V2623M 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A2I2-01 7 103275933 103275933 C G RELN Missense_Mutation p.D802H 0.05 deleterious(0.01) probably_damaging(0.935) TCGA-DK-A2I2-01 7 130022031 130022031 G A CPA1 Missense_Mutation p.R155H 0.08 deleterious(0) probably_damaging(0.984) TCGA-DK-A2I2-01 7 140058547 140058547 G C SLC37A3 Missense_Mutation p.F138L 0.09 tolerated(0.1) benign(0.026) TCGA-DK-A2I2-01 7 149422508 149422508 C T KRBA1 Missense_Mutation p.S410F 0.18 tolerated(0.27) probably_damaging(0.983) TCGA-DK-A2I2-01 7 50513419 50513419 C T FIGNL1 Missense_Mutation p.E523K 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A2I2-01 7 6456255 6456255 C T DAGLB Intron 0.09 TCGA-DK-A2I2-01 7 72988323 72988323 T C TBL2 Missense_Mutation p.R131G 0.07 deleterious(0) probably_damaging(0.986) TCGA-DK-A2I2-01 7 87473129 87473129 T C SLC25A40 Silent p.K227K 0.39 TCGA-DK-A2I2-01 7 87825918 87825918 C T ADAM22 3'Flank 0.23 TCGA-DK-A2I2-01 7 95041045 95041045 A G PON2 Silent p.N138N 0.16 TCGA-DK-A2I2-01 7 98639810 98639810 G A SMURF1 Silent p.Y460Y 0.09 TCGA-DK-A2I2-01 8 105160951 105160951 C T RIMS2 Intron 0.19 TCGA-DK-A2I2-01 8 10755762 10755762 C T XKR6 Silent p.T542T 0.17 TCGA-DK-A2I2-01 8 110592172 110592172 G T SYBU Nonsense_Mutation p.S197* 0.13 TCGA-DK-A2I2-01 8 120577110 120577110 G A ENPP2 Silent p.F791F 0.11 TCGA-DK-A2I2-01 8 124382178 124382178 C G ATAD2 Missense_Mutation p.D272H 0.18 deleterious(0.03) benign(0.121) TCGA-DK-A2I2-01 8 12947882 12947882 G A DLC1 Missense_Mutation p.S1318L 0.13 tolerated(0.28) benign(0.002) TCGA-DK-A2I2-01 9 130496823 130496823 G A TOR2A Nonsense_Mutation p.Q58* 0.33 TCGA-DK-A2I2-01 9 133364826 133364826 G C ASS1 Missense_Mutation p.L315F 0.09 tolerated(0.61) benign(0.229) TCGA-DK-A2I2-01 9 35450108 35450108 T C ATP8B5P RNA 0.56 TCGA-DK-A2I2-01 X 130411013 130411013 G T IGSF1 Silent p.I841I 0.10 TCGA-DK-A2I2-01 X 152858023 152858023 G C FAM58A Missense_Mutation p.L198V 0.17 tolerated(0.07) possibly_damaging(0.787) TCGA-DK-A2I2-01 X 153609241 153609241 G A EMD Splice_Site p.X150_splice 0.12 TCGA-DK-A2I2-01 X 44949018 44949018 G A KDM6A Nonsense_Mutation p.W1193* 0.30 TCGA-DK-A2I4-01 10 100174797 100174797 C T PYROXD2 Silent p.K32K 0.22 TCGA-DK-A2I4-01 10 101464399 101464399 G A ENTPD7 Missense_Mutation p.E592K 0.34 deleterious_low_confidence(0.02) benign(0.292) TCGA-DK-A2I4-01 10 102058407 102058407 C G PKD2L1 Missense_Mutation p.D215H 0.31 deleterious(0) probably_damaging(0.991) TCGA-DK-A2I4-01 10 104678579 104678579 G A CNNM2 Silent p.T114T 0.23 TCGA-DK-A2I4-01 10 105179396 105179396 G A PDCD11 Silent p.V736V 0.20 TCGA-DK-A2I4-01 10 105207266 105207266 G C CALHM2 Silent p.L205L 0.24 TCGA-DK-A2I4-01 10 105942240 105942240 G C WDR96 Missense_Mutation p.L725V 0.14 tolerated(1) benign(0.026) TCGA-DK-A2I4-01 10 119044035 119044035 C T PDZD8 Missense_Mutation p.E737K 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-DK-A2I4-01 10 126523473 126523473 C T FAM175B Missense_Mutation p.S394L 0.21 tolerated_low_confidence(0.18) benign(0.154) TCGA-DK-A2I4-01 10 15175327 15175327 C G NMT2 Missense_Mutation p.D143H 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-DK-A2I4-01 10 17276805 17276805 C T VIM Silent p.A332A 0.07 TCGA-DK-A2I4-01 10 21804708 21804708 G A SKIDA1 Silent p.L682L 0.11 TCGA-DK-A2I4-01 10 23321936 23321936 G A ARMC3 Missense_Mutation p.R798Q 0.23 deleterious(0) probably_damaging(0.981) TCGA-DK-A2I4-01 10 30317490 30317490 C G KIAA1462 Silent p.V529V 0.12 TCGA-DK-A2I4-01 10 30915075 30915075 C T LYZL2 Missense_Mutation p.G132E 0.11 tolerated(0.12) benign(0.004) TCGA-DK-A2I4-01 10 34420503 34420503 G C PARD3 Nonsense_Mutation p.S1146* 0.12 TCGA-DK-A2I4-01 10 3827233 3827233 G A KLF6 5'UTR 0.20 TCGA-DK-A2I4-01 10 3827248 3827248 G A KLF6 5'UTR 0.11 TCGA-DK-A2I4-01 10 48389979 48389979 C G RBP3 Missense_Mutation p.G300A 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A2I4-01 10 50740821 50740821 C T ERCC6-PGBD3 Missense_Mutation p.A64T 0.23 deleterious_low_confidence(0.04) benign(0.093) TCGA-DK-A2I4-01 10 5810189 5810189 G C GDI2 Silent p.V326V 0.16 TCGA-DK-A2I4-01 10 61833285 61833285 C G ANK3 Missense_Mutation p.E2452Q 0.15 probably_damaging(0.968) TCGA-DK-A2I4-01 10 71332658 71332658 C T NEUROG3 Missense_Mutation p.E48K 0.22 tolerated(0.07) benign(0.257) TCGA-DK-A2I4-01 10 73521588 73521588 G A C10orf54 Missense_Mutation p.T93M 0.22 deleterious(0) probably_damaging(0.928) TCGA-DK-A2I4-01 10 75562357 75562357 G C NDST2 Intron 0.15 TCGA-DK-A2I4-01 10 7604907 7604907 C G ITIH5 3'UTR 0.12 TCGA-DK-A2I4-01 10 78708987 78708987 G C KCNMA1 Silent p.L857L 0.25 TCGA-DK-A2I4-01 10 91066371 91066371 C T IFIT2 Missense_Mutation p.H220Y 0.09 deleterious(0) benign(0.173) TCGA-DK-A2I4-01 10 97772423 97772423 C G CC2D2B Missense_Mutation p.I85M 0.22 deleterious(0) probably_damaging(0.994) TCGA-DK-A2I4-01 10 98205917 98205917 C G TLL2 Missense_Mutation p.E99Q 0.22 tolerated_low_confidence(0.18) benign(0.002) TCGA-DK-A2I4-01 10 99416092 99416092 G A PI4K2A Silent p.V199V 0.13 TCGA-DK-A2I4-01 11 101828992 101828992 G C KIAA1377 Missense_Mutation p.M200I 0.11 tolerated(0.26) benign(0.092) TCGA-DK-A2I4-01 11 102272700 102272700 G A TMEM123 Missense_Mutation p.T132I 0.10 tolerated(0.13) possibly_damaging(0.702) TCGA-DK-A2I4-01 11 102479695 102479695 C T MMP20 Missense_Mutation p.D262N 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 11 10327400 10327400 G A ADM Intron 0.18 TCGA-DK-A2I4-01 11 104821781 104821781 G A CASP4 Silent p.L139L 0.12 TCGA-DK-A2I4-01 11 10500089 10500089 A G AMPD3 Missense_Mutation p.M89V 0.27 tolerated(0.28) benign(0.031) TCGA-DK-A2I4-01 11 10823911 10823911 G A EIF4G2 Silent p.F356F 0.13 TCGA-DK-A2I4-01 11 1159327 1159327 C T MUC5AC Missense_Mutation p.S435F 0.15 deleterious(0) probably_damaging(0.985) TCGA-DK-A2I4-01 11 118948904 118948904 C T VPS11 Missense_Mutation p.P594S 0.08 tolerated(0.55) benign(0.047) TCGA-DK-A2I4-01 11 119212284 119212284 C T MFRP Missense_Mutation p.D572N 0.15 tolerated(0.14) benign(0.077) TCGA-DK-A2I4-01 11 11924404 11924404 G A USP47 Missense_Mutation p.E178K 0.16 deleterious(0) probably_damaging(0.97) TCGA-DK-A2I4-01 11 120996548 120996548 C A TECTA Missense_Mutation p.P581T 0.09 tolerated(1) benign(0.012) TCGA-DK-A2I4-01 11 122805215 122805215 C G C11orf63 Missense_Mutation p.Q356E 0.20 deleterious(0.03) benign(0.407) TCGA-DK-A2I4-01 11 124623758 124623758 G A ESAM Silent p.L319L 0.08 TCGA-DK-A2I4-01 11 1272547 1272547 C T MUC5B Silent p.L4813L 0.13 TCGA-DK-A2I4-01 11 129762877 129762877 C T NFRKB 5'UTR 0.19 TCGA-DK-A2I4-01 11 1298324 1298324 C T TOLLIP Missense_Mutation p.R257Q 0.13 tolerated(0.09) benign(0.034) TCGA-DK-A2I4-01 11 14280896 14280896 G A RP11-21L19.1 3'Flank 0.13 TCGA-DK-A2I4-01 11 14280908 14280908 G A RP11-21L19.1 3'Flank 0.15 TCGA-DK-A2I4-01 11 14282247 14282247 G C RP11-21L19.1 3'Flank 0.22 TCGA-DK-A2I4-01 11 14487843 14487843 C G COPB1 Missense_Mutation p.E759Q 0.17 deleterious(0.04) probably_damaging(1) TCGA-DK-A2I4-01 11 18057567 18057567 C T TPH1 Silent p.L80L 0.16 TCGA-DK-A2I4-01 11 209946 209946 C T RIC8A Silent p.I224I 0.12 TCGA-DK-A2I4-01 11 33106613 33106613 C T CSTF3 3'UTR 0.13 TCGA-DK-A2I4-01 11 46917828 46917828 C T LRP4 Silent p.Q327Q 0.15 TCGA-DK-A2I4-01 11 47660529 47660529 G C MTCH2 Silent p.L54L 0.22 TCGA-DK-A2I4-01 11 57100260 57100260 G A SSRP1 Missense_Mutation p.R203W 0.07 deleterious(0) possibly_damaging(0.892) TCGA-DK-A2I4-01 11 57137369 57137369 A G P2RX3 Missense_Mutation p.T365A 0.32 tolerated(0.72) benign(0.016) TCGA-DK-A2I4-01 11 60233575 60233575 C T MS4A1 Missense_Mutation p.S173F 0.27 tolerated(0.2) benign(0.092) TCGA-DK-A2I4-01 11 61026481 61026481 G A VWCE Missense_Mutation p.S845L 0.20 tolerated_low_confidence(0.13) benign(0.31) TCGA-DK-A2I4-01 11 61252187 61252187 G C PPP1R32 Missense_Mutation p.E137Q 0.16 tolerated(0.05) possibly_damaging(0.742) TCGA-DK-A2I4-01 11 61545871 61545871 G A MYRF Silent p.V641V 0.10 TCGA-DK-A2I4-01 11 61545877 61545877 G A MYRF Silent p.E643E 0.11 TCGA-DK-A2I4-01 11 62569489 62569489 G C NXF1 Missense_Mutation p.F161L 0.15 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 11 62570909 62570909 C T NXF1 Silent p.K117K 0.12 TCGA-DK-A2I4-01 11 62575050 62575050 G C STX5 Nonsense_Mutation p.S320* 0.22 TCGA-DK-A2I4-01 11 63072312 63072312 G A SLC22A10 Missense_Mutation p.E517K 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 11 63486675 63486675 C T RTN3 Missense_Mutation p.S234L 0.23 tolerated(0.1) benign(0.022) TCGA-DK-A2I4-01 11 63486765 63486765 C G RTN3 Nonsense_Mutation p.S264* 0.36 TCGA-DK-A2I4-01 11 64082560 64082560 C G ESRRA Nonsense_Mutation p.S277* 0.16 TCGA-DK-A2I4-01 11 64508453 64508453 C T RASGRP2 Missense_Mutation p.R113Q 0.15 tolerated(0.1) benign(0.115) TCGA-DK-A2I4-01 11 64694350 64694350 C T PPP2R5B Silent p.I122I 0.11 TCGA-DK-A2I4-01 11 64795031 64795031 G A SNX15 Missense_Mutation p.D8N 0.12 deleterious(0) probably_damaging(0.98) TCGA-DK-A2I4-01 11 65417656 65417656 G A SIPA1 Missense_Mutation p.D966N 0.23 deleterious(0.03) benign(0.004) TCGA-DK-A2I4-01 11 66453844 66453844 G A SPTBN2 Intron 0.22 TCGA-DK-A2I4-01 11 67021043 67021043 C G KDM2A Missense_Mutation p.Q1018E 0.17 deleterious(0) probably_damaging(0.97) TCGA-DK-A2I4-01 11 67925239 67925239 C G SUV420H1 Missense_Mutation p.L858F 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 11 67925604 67925604 C T SUV420H1 Missense_Mutation p.G737R 0.08 deleterious(0.02) possibly_damaging(0.526) TCGA-DK-A2I4-01 11 67925754 67925754 C A SUV420H1 Missense_Mutation p.D687Y 0.33 deleterious(0) possibly_damaging(0.466) TCGA-DK-A2I4-01 11 67933414 67933414 C G SUV420H1 Intron 0.30 TCGA-DK-A2I4-01 11 68748225 68748225 G A MRGPRD Silent p.F77F 0.27 TCGA-DK-A2I4-01 11 71725723 71725723 C T NUMA1 Silent p.A942A 0.20 TCGA-DK-A2I4-01 11 71932542 71932542 C T FOLR2 Silent p.L168L 0.11 TCGA-DK-A2I4-01 11 7334658 7334658 C T SYT9 Missense_Mutation p.S177L 0.10 deleterious(0.02) possibly_damaging(0.905) TCGA-DK-A2I4-01 11 73882471 73882471 C G PPME1 Missense_Mutation p.S2W 0.17 deleterious(0) probably_damaging(0.992) TCGA-DK-A2I4-01 11 74419417 74419417 G C CHRDL2 Silent p.L152L 0.15 TCGA-DK-A2I4-01 11 74651851 74651851 G A XRRA1 Silent p.L25L 0.23 TCGA-DK-A2I4-01 11 7647116 7647116 G C PPFIBP2 Missense_Mutation p.E274Q 0.07 deleterious(0.01) benign(0.405) TCGA-DK-A2I4-01 11 7982410 7982410 C T NLRP10 Missense_Mutation p.G250D 0.08 tolerated(0.1) possibly_damaging(0.822) TCGA-DK-A2I4-01 11 82879595 82879595 C T PCF11 Nonsense_Mutation p.Q740* 0.21 TCGA-DK-A2I4-01 11 83195224 83195224 G A DLG2 Silent p.F747F 0.16 TCGA-DK-A2I4-01 11 9051467 9051467 C T SCUBE2 Missense_Mutation p.D766N 0.12 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 11 93912933 93912933 C T PANX1 Silent p.L237L 0.19 TCGA-DK-A2I4-01 11 94533394 94533394 C G AMOTL1 Silent p.V346V 0.13 TCGA-DK-A2I4-01 12 10149469 10149469 C A CLEC1B Silent p.L138L 0.10 TCGA-DK-A2I4-01 12 102057224 102057224 C T MYBPC1 Missense_Mutation p.L723F 0.12 tolerated(0.38) possibly_damaging(0.899) TCGA-DK-A2I4-01 12 10750704 10750704 G A KLRAP1 RNA 0.07 TCGA-DK-A2I4-01 12 108954849 108954849 C T SART3 Missense_Mutation p.E28K 0.12 tolerated_low_confidence(0.16) benign(0.006) TCGA-DK-A2I4-01 12 111758298 111758298 G A CUX2 Missense_Mutation p.E829K 0.17 tolerated(0.38) benign(0.067) TCGA-DK-A2I4-01 12 111957800 111957800 G C ATXN2 Nonsense_Mutation p.S450* 0.08 TCGA-DK-A2I4-01 12 112707527 112707527 C T HECTD4 Missense_Mutation p.E624K 0.12 benign(0.364) TCGA-DK-A2I4-01 12 115112445 115112445 G A TBX3 Missense_Mutation p.S432L 0.19 tolerated(0.07) benign(0.006) TCGA-DK-A2I4-01 12 120118103 120118103 C T PRKAB1 Silent p.V262V 0.12 TCGA-DK-A2I4-01 12 120220372 120220372 G A CIT Missense_Mutation p.L539F 0.10 deleterious(0) benign(0.094) TCGA-DK-A2I4-01 12 120592798 120592798 G C GCN1L1 Missense_Mutation p.S1226C 0.10 possibly_damaging(0.838) TCGA-DK-A2I4-01 12 123011447 123011447 C G RSRC2 5'UTR 0.12 TCGA-DK-A2I4-01 12 123253411 123253411 C T DENR Silent p.I165I 0.15 TCGA-DK-A2I4-01 12 123665727 123665727 C G MPHOSPH9 Missense_Mutation p.E606Q 0.08 deleterious(0.05) possibly_damaging(0.545) TCGA-DK-A2I4-01 12 124158295 124158295 C T TCTN2 Missense_Mutation p.S134L 0.18 tolerated(1) benign(0) TCGA-DK-A2I4-01 12 124409711 124409711 C T DNAH10 Missense_Mutation p.R3843W 0.10 probably_damaging(0.973) TCGA-DK-A2I4-01 12 131471689 131471689 G A GPR133 Silent p.L180L 0.12 TCGA-DK-A2I4-01 12 133327436 133327436 C G ANKLE2 Splice_Site p.X214_splice 0.11 TCGA-DK-A2I4-01 12 14946788 14946788 G C WBP11 Missense_Mutation p.Q264E 0.10 tolerated_low_confidence(0.09) unknown(0) TCGA-DK-A2I4-01 12 19593295 19593295 C A AEBP2 Nonsense_Mutation p.S221* 0.07 TCGA-DK-A2I4-01 12 2017150 2017150 G A CACNA2D4 Silent p.F180F 0.15 TCGA-DK-A2I4-01 12 21392055 21392055 T A SLCO1B1 Missense_Mutation p.L670I 0.17 tolerated(0.12) benign(0.21) TCGA-DK-A2I4-01 12 26589263 26589263 G A ITPR2 Silent p.F2220F 0.07 TCGA-DK-A2I4-01 12 27523108 27523108 C T ARNTL2 Missense_Mutation p.P77S 0.14 tolerated(0.12) possibly_damaging(0.782) TCGA-DK-A2I4-01 12 3104006 3104006 C T TEAD4 Missense_Mutation p.S25F 0.12 deleterious(0.01) possibly_damaging(0.863) TCGA-DK-A2I4-01 12 32480797 32480797 G C BICD1 Missense_Mutation p.E470Q 0.07 tolerated(0.18) probably_damaging(1) TCGA-DK-A2I4-01 12 3789434 3789434 G C EFCAB4B Missense_Mutation p.L104V 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 12 46245498 46245498 C G ARID2 Missense_Mutation p.P1198A 0.09 tolerated_low_confidence(0.09) possibly_damaging(0.78) TCGA-DK-A2I4-01 12 48723735 48723735 G A H1FNT Missense_Mutation p.V221M 0.17 tolerated(0.13) benign(0.1) TCGA-DK-A2I4-01 12 49579554 49579554 C T TUBA1A Missense_Mutation p.D199N 0.07 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-DK-A2I4-01 12 49934725 49934725 C T KCNH3 Silent p.F40F 0.11 TCGA-DK-A2I4-01 12 49935417 49935417 C A KCNH3 Silent p.L105L 0.09 TCGA-DK-A2I4-01 12 50490678 50490678 G A SMARCD1 Missense_Mutation p.E439K 0.17 deleterious(0) benign(0.137) TCGA-DK-A2I4-01 12 50616148 50616148 C A LIMA1 Nonsense_Mutation p.E96* 0.08 TCGA-DK-A2I4-01 12 52164398 52164398 C A SCN8A Missense_Mutation p.F1192L 0.21 deleterious(0.02) benign(0.11) TCGA-DK-A2I4-01 12 52565325 52565325 G A KRT80 Intron 0.20 TCGA-DK-A2I4-01 12 52845454 52845454 C G KRT6B Missense_Mutation p.E137Q 0.07 tolerated(0.13) benign(0.318) TCGA-DK-A2I4-01 12 52886480 52886480 C T KRT6A Missense_Mutation p.E165K 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 12 53607028 53607028 C T RARG Splice_Site p.X340_splice 0.11 TCGA-DK-A2I4-01 12 53897505 53897505 C T TARBP2 Missense_Mutation p.S112F 0.09 tolerated(0.07) benign(0) TCGA-DK-A2I4-01 12 53900643 53900643 C T NPFF Missense_Mutation p.E87K 0.13 tolerated(0.22) benign(0.012) TCGA-DK-A2I4-01 12 54795249 54795249 C T ITGA5 Missense_Mutation p.E801K 0.12 tolerated(0.12) possibly_damaging(0.761) TCGA-DK-A2I4-01 12 55726281 55726281 C T OR6C3 Missense_Mutation p.S266L 0.10 deleterious_low_confidence(0) benign(0.077) TCGA-DK-A2I4-01 12 56631548 56631548 C T SLC39A5 3'UTR 0.17 TCGA-DK-A2I4-01 12 56663988 56663988 G C COQ10A Missense_Mutation p.D211H 0.12 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 12 56816720 56816720 G C TIMELESS Silent p.V783V 0.06 TCGA-DK-A2I4-01 12 56817142 56817142 G C TIMELESS Silent p.L736L 0.05 TCGA-DK-A2I4-01 12 56817207 56817207 G C TIMELESS Missense_Mutation p.Q715E 0.04 tolerated(1) benign(0.003) TCGA-DK-A2I4-01 12 56827390 56827390 G A TIMELESS Silent p.L100L 0.14 TCGA-DK-A2I4-01 12 57501056 57501056 G C STAT6 Missense_Mutation p.F99L 0.11 tolerated(0.22) benign(0.002) TCGA-DK-A2I4-01 12 57586683 57586683 C T LRP1 Silent p.L2495L 0.10 TCGA-DK-A2I4-01 12 57677750 57677750 C T R3HDM2 Missense_Mutation p.S329N 0.16 deleterious(0) probably_damaging(0.995) TCGA-DK-A2I4-01 12 57865639 57865639 C T GLI1 Missense_Mutation p.S1039F 0.14 deleterious(0) possibly_damaging(0.724) TCGA-DK-A2I4-01 12 58010154 58010154 G T ARHGEF25 Missense_Mutation p.G542V 0.17 tolerated(0.07) benign(0.148) TCGA-DK-A2I4-01 12 63963088 63963088 G A DPY19L2 Missense_Mutation p.S681F 0.12 deleterious(0.01) possibly_damaging(0.897) TCGA-DK-A2I4-01 12 64812872 64812872 G C XPOT Missense_Mutation p.E163Q 0.10 tolerated(0.32) benign(0.207) TCGA-DK-A2I4-01 12 64833030 64833030 G A XPOT Missense_Mutation p.E914K 0.12 deleterious(0.01) possibly_damaging(0.78) TCGA-DK-A2I4-01 12 6579774 6579774 G T VAMP1 5'UTR 0.12 TCGA-DK-A2I4-01 12 66703693 66703693 C T HELB Missense_Mutation p.H329Y 0.12 tolerated(0.17) benign(0.001) TCGA-DK-A2I4-01 12 6692090 6692090 G A CHD4 Missense_Mutation p.P1387L 0.16 tolerated(0.14) probably_damaging(0.975) TCGA-DK-A2I4-01 12 7527246 7527246 C G CD163L1 Silent p.L1067L 0.12 TCGA-DK-A2I4-01 12 78513293 78513293 C T NAV3 Missense_Mutation p.S1106L 0.15 tolerated(0.13) benign(0.197) TCGA-DK-A2I4-01 12 81472105 81472105 C A ACSS3 Nonsense_Mutation p.S69* 0.08 TCGA-DK-A2I4-01 12 8866535 8866535 G A RIMKLB Missense_Mutation p.E25K 0.15 tolerated(0.13) benign(0.079) TCGA-DK-A2I4-01 13 103343304 103343304 C G METTL21C Missense_Mutation p.K47N 0.11 tolerated(0.24) benign(0.001) TCGA-DK-A2I4-01 13 109535458 109535458 C G MYO16 Missense_Mutation p.P471A 0.10 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 13 110960258 110960258 G A COL4A2 Missense_Mutation p.R3K 0.10 benign(0.143) TCGA-DK-A2I4-01 13 21721357 21721357 G C SAP18 Missense_Mutation p.R132T 0.13 tolerated(0.1) probably_damaging(0.929) TCGA-DK-A2I4-01 13 25067846 25067846 G C PARP4 Nonsense_Mutation p.S256* 0.25 TCGA-DK-A2I4-01 13 25077788 25077788 G C PARP4 Missense_Mutation p.P43A 0.10 tolerated(0.19) benign(0.081) TCGA-DK-A2I4-01 13 25144762 25144762 G T RP11-556N21.1 RNA 0.10 TCGA-DK-A2I4-01 13 26620630 26620630 G T SHISA2 3'UTR 0.27 TCGA-DK-A2I4-01 13 27239225 27239225 G A WASF3 Missense_Mutation p.R65K 0.12 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 13 28141891 28141891 G A LNX2 Silent p.I247I 0.09 TCGA-DK-A2I4-01 13 31233420 31233420 C T USPL1 Missense_Mutation p.S1069L 0.11 deleterious(0) probably_damaging(0.959) TCGA-DK-A2I4-01 13 32709061 32709061 C T FRY Silent p.L302L 0.15 TCGA-DK-A2I4-01 13 32721489 32721489 G A FRY Missense_Mutation p.R417Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 13 32913140 32913140 G A BRCA2 Missense_Mutation p.E1550K 0.19 tolerated(1) benign(0.006) TCGA-DK-A2I4-01 13 33017213 33017213 C T N4BP2L2 Silent p.R487R 0.25 TCGA-DK-A2I4-01 13 33700224 33700224 G C STARD13 Silent p.L692L 0.12 TCGA-DK-A2I4-01 13 39433625 39433625 C T FREM2 Nonsense_Mutation p.Q2473* 0.14 TCGA-DK-A2I4-01 13 41767323 41767323 G C KBTBD7 Silent p.L357L 0.13 TCGA-DK-A2I4-01 13 45148962 45148962 C G TSC22D1 Missense_Mutation p.E417Q 0.17 deleterious(0) probably_damaging(0.934) TCGA-DK-A2I4-01 13 45589108 45589108 G C GPALPP1 Missense_Mutation p.E144Q 0.16 deleterious(0.02) possibly_damaging(0.772) TCGA-DK-A2I4-01 13 45768742 45768742 G C KCTD4 5'UTR 0.12 TCGA-DK-A2I4-01 13 46942258 46942258 G A KIAA0226L Nonsense_Mutation p.Q249* 0.16 TCGA-DK-A2I4-01 13 47263286 47263286 G C LRCH1 Silent p.S323S 0.24 TCGA-DK-A2I4-01 13 47263293 47263293 G A LRCH1 Missense_Mutation p.G326R 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 13 50080827 50080827 G A PHF11 Missense_Mutation p.D51N 0.15 tolerated(0.12) benign(0.134) TCGA-DK-A2I4-01 13 75861065 75861065 C G TBC1D4 Missense_Mutation p.E1254Q 0.10 deleterious(0) possibly_damaging(0.645) TCGA-DK-A2I4-01 13 79942973 79942973 G T RBM26 Missense_Mutation p.H263N 0.09 tolerated(0.07) probably_damaging(0.98) TCGA-DK-A2I4-01 13 79943032 79943032 G C RBM26 Missense_Mutation p.S243C 0.09 deleterious(0) benign(0.349) TCGA-DK-A2I4-01 13 88328435 88328435 T A SLITRK5 Nonsense_Mutation p.C264* 0.05 TCGA-DK-A2I4-01 13 98622009 98622009 C G IPO5 5'UTR 0.06 TCGA-DK-A2I4-01 14 102552649 102552649 G A HSP90AA1 Nonsense_Mutation p.Q145* 0.11 TCGA-DK-A2I4-01 14 104121117 104121117 C T KLC1 Silent p.I72I 0.13 TCGA-DK-A2I4-01 14 105354098 105354098 G A CEP170B Silent p.R1174R 0.26 TCGA-DK-A2I4-01 14 105405994 105405994 G A AHNAK2 Missense_Mutation p.S5265F 0.13 benign(0.043) TCGA-DK-A2I4-01 14 20444469 20444469 G A OR4K15 Silent p.L264L 0.11 TCGA-DK-A2I4-01 14 24601689 24601689 G A FITM1 Missense_Mutation p.R179Q 0.12 tolerated(0.12) benign(0.133) TCGA-DK-A2I4-01 14 24768168 24768168 G A DHRS1 Nonsense_Mutation p.Q49* 0.15 TCGA-DK-A2I4-01 14 25288302 25288302 C G STXBP6 Missense_Mutation p.E184Q 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A2I4-01 14 31177222 31177222 G C SCFD1 Missense_Mutation p.G527A 0.12 deleterious(0.04) possibly_damaging(0.768) TCGA-DK-A2I4-01 14 33292806 33292806 G C AKAP6 Missense_Mutation p.E1929D 0.14 deleterious(0.04) benign(0.005) TCGA-DK-A2I4-01 14 34419589 34419589 G C EGLN3 Intron 0.10 TCGA-DK-A2I4-01 14 34420027 34420027 G A EGLN3 5'UTR 0.15 TCGA-DK-A2I4-01 14 34931425 34931425 G A SPTSSA 5'UTR 0.20 TCGA-DK-A2I4-01 14 45433339 45433339 G A FAM179B Missense_Mutation p.R572K 0.10 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 14 50100987 50100987 G A DNAAF2 Missense_Mutation p.S294L 0.16 deleterious(0) probably_damaging(0.965) TCGA-DK-A2I4-01 14 51411041 51411041 C G PYGL Missense_Mutation p.E27D 0.11 tolerated(0.67) probably_damaging(0.946) TCGA-DK-A2I4-01 14 53020091 53020091 G A GPR137C Missense_Mutation p.E76K 0.14 deleterious(0.01) unknown(0) TCGA-DK-A2I4-01 14 55618639 55618639 C G DLGAP5 Missense_Mutation p.L714F 0.11 tolerated(0.84) benign(0.002) TCGA-DK-A2I4-01 14 59965517 59965517 G A JKAMP Silent p.K177K 0.14 TCGA-DK-A2I4-01 14 60574729 60574729 G A PCNXL4 Intron 0.26 TCGA-DK-A2I4-01 14 65289844 65289844 C T SPTB 5'UTR 0.19 TCGA-DK-A2I4-01 14 67671476 67671476 G A FAM71D Silent p.T194T 0.13 TCGA-DK-A2I4-01 14 68159246 68159246 C T RDH11 Silent p.Q86Q 0.14 TCGA-DK-A2I4-01 14 72939577 72939577 C G RGS6 Intron 0.09 TCGA-DK-A2I4-01 14 73137950 73137950 G A DPF3 Missense_Mutation p.S323L 0.08 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-DK-A2I4-01 14 73959790 73959790 C T HEATR4 Missense_Mutation p.D942N 0.08 tolerated(0.1) benign(0.433) TCGA-DK-A2I4-01 14 73959826 73959826 C T HEATR4 Missense_Mutation p.E930K 0.06 tolerated(0.06) benign(0.162) TCGA-DK-A2I4-01 14 75078187 75078187 G A LTBP2 Missense_Mutation p.A154V 0.10 tolerated(0.06) benign(0.12) TCGA-DK-A2I4-01 14 76211452 76211452 C G TTLL5 Silent p.L432L 0.24 TCGA-DK-A2I4-01 14 77872309 77872309 C G NOXRED1 Missense_Mutation p.L284F 0.11 tolerated(1) benign(0) TCGA-DK-A2I4-01 14 92588065 92588065 C T NDUFB1 Silent p.P19P 0.11 TCGA-DK-A2I4-01 14 93730309 93730309 G A BTBD7 Missense_Mutation p.S398L 0.11 deleterious(0.01) possibly_damaging(0.702) TCGA-DK-A2I4-01 14 94088398 94088398 C T UNC79 Silent p.L1430L 0.14 TCGA-DK-A2I4-01 14 94128992 94128992 C T UNC79 Nonsense_Mutation p.Q2052* 0.12 TCGA-DK-A2I4-01 15 101566280 101566280 C G LRRK1 Silent p.L781L 0.17 TCGA-DK-A2I4-01 15 23299970 23299970 G A HERC2P2 RNA 0.12 TCGA-DK-A2I4-01 15 23811991 23811991 G C MKRN3 Missense_Mutation p.E354D 0.09 tolerated(0.11) possibly_damaging(0.551) TCGA-DK-A2I4-01 15 25318342 25318342 G A SNORD116-9 RNA 0.11 TCGA-DK-A2I4-01 15 25427607 25427607 G A SNORD115-6 3'Flank 0.09 TCGA-DK-A2I4-01 15 25438337 25438337 C T SNORD115-11 3'Flank 0.33 TCGA-DK-A2I4-01 15 31202822 31202822 G A FAN1 Missense_Mutation p.E461K 0.28 deleterious(0) possibly_damaging(0.628) TCGA-DK-A2I4-01 15 40698015 40698015 C A IVD 5'UTR 0.29 TCGA-DK-A2I4-01 15 41362724 41362724 C T INO80 Missense_Mutation p.D543N 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 15 41624585 41624585 C T OIP5 Missense_Mutation p.E59K 0.33 tolerated(0.32) benign(0.006) TCGA-DK-A2I4-01 15 41643245 41643245 G A NUSAP1 Silent p.Q122Q 0.44 TCGA-DK-A2I4-01 15 42058963 42058963 G A MGA Missense_Mutation p.D2895N 0.24 tolerated(0.26) benign(0.242) TCGA-DK-A2I4-01 15 42691775 42691775 C T CAPN3 Nonsense_Mutation p.Q427* 0.17 TCGA-DK-A2I4-01 15 52258074 52258074 G A LEO1 Missense_Mutation p.S229F 0.31 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-DK-A2I4-01 15 59358969 59358969 C G RNF111 Nonsense_Mutation p.S458* 0.38 TCGA-DK-A2I4-01 15 65426045 65426045 G T PDCD7 Missense_Mutation p.F25L 0.33 tolerated_low_confidence(0.36) unknown(0) TCGA-DK-A2I4-01 15 76463343 76463343 G A C15orf27 Missense_Mutation p.G175R 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 15 78790409 78790409 C T IREB2 Missense_Mutation p.S939L 0.13 tolerated(0.08) benign(0) TCGA-DK-A2I4-01 15 85619974 85619974 G C PDE8A Missense_Mutation p.E168Q 0.08 deleterious(0.04) possibly_damaging(0.816) TCGA-DK-A2I4-01 15 89449884 89449884 G A MFGE8 Silent p.F171F 0.19 TCGA-DK-A2I4-01 15 91433455 91433455 G A FES Missense_Mutation p.E395K 0.14 deleterious(0.02) benign(0.296) TCGA-DK-A2I4-01 15 93486105 93486105 G C CHD2 Missense_Mutation p.E287Q 0.13 tolerated(0.07) benign(0.217) TCGA-DK-A2I4-01 15 93522446 93522446 C T CHD2 Missense_Mutation p.H937Y 0.21 deleterious(0) possibly_damaging(0.501) TCGA-DK-A2I4-01 15 93527686 93527686 G C CHD2 Missense_Mutation p.E1065Q 0.18 tolerated(0.14) benign(0.046) TCGA-DK-A2I4-01 15 94986184 94986184 G C MCTP2 Missense_Mutation p.D749H 0.10 deleterious(0) possibly_damaging(0.608) TCGA-DK-A2I4-01 15 99892583 99892583 G A LRRC28 Missense_Mutation p.R201Q 0.10 tolerated(0.15) possibly_damaging(0.905) TCGA-DK-A2I4-01 16 10576009 10576009 G A ATF7IP2 Missense_Mutation p.R651K 0.13 tolerated(1) benign(0.001) TCGA-DK-A2I4-01 16 12145758 12145758 C T SNX29 Missense_Mutation p.S268L 0.16 deleterious(0.02) benign(0.318) TCGA-DK-A2I4-01 16 1536456 1536456 G A PTX4 Silent p.S302S 0.20 TCGA-DK-A2I4-01 16 15733110 15733110 C G KIAA0430 5'UTR 0.11 TCGA-DK-A2I4-01 16 1575300 1575300 G A IFT140 Silent p.F932F 0.12 TCGA-DK-A2I4-01 16 1843710 1843710 G A IGFALS 5'UTR 0.29 TCGA-DK-A2I4-01 16 20999081 20999081 G C DNAH3 Silent p.V2272V 0.14 TCGA-DK-A2I4-01 16 25232864 25232864 C G AQP8 Nonsense_Mutation p.S116* 0.11 TCGA-DK-A2I4-01 16 2578543 2578543 T C AMDHD2 Missense_Mutation p.L318P 0.06 tolerated(0.19) probably_damaging(0.964) TCGA-DK-A2I4-01 16 2811715 2811715 G A SRRM2 Missense_Mutation p.E396K 0.14 unknown(0) TCGA-DK-A2I4-01 16 2812166 2812166 G C SRRM2 Missense_Mutation p.R546T 0.13 unknown(0) TCGA-DK-A2I4-01 16 2812176 2812176 G A SRRM2 Silent p.Q549Q 0.14 TCGA-DK-A2I4-01 16 2812362 2812362 G C SRRM2 Silent p.R611R 0.06 TCGA-DK-A2I4-01 16 2814751 2814751 G C SRRM2 Missense_Mutation p.D1408H 0.15 unknown(0) TCGA-DK-A2I4-01 16 2835105 2835105 G A PRSS33 Silent p.D194D 0.20 TCGA-DK-A2I4-01 16 3014462 3014462 G A KREMEN2 5'UTR 0.27 TCGA-DK-A2I4-01 16 30715622 30715622 G A SRCAP Missense_Mutation p.E98K 0.15 unknown(0) TCGA-DK-A2I4-01 16 31049270 31049270 C T STX4 Silent p.F134F 0.08 TCGA-DK-A2I4-01 16 31309204 31309204 G A ITGAM Missense_Mutation p.E547K 0.10 deleterious(0.03) benign(0.095) TCGA-DK-A2I4-01 16 31473868 31473868 C T ARMC5 Missense_Mutation p.R334C 0.12 deleterious(0.01) possibly_damaging(0.685) TCGA-DK-A2I4-01 16 31499002 31499002 C T SLC5A2 Silent p.P269P 0.16 TCGA-DK-A2I4-01 16 3191255 3191255 C T ZNF213 Silent p.F429F 0.09 TCGA-DK-A2I4-01 16 32077589 32077589 C T IGHV3OR16-9 Silent p.F68F 0.04 TCGA-DK-A2I4-01 16 32265033 32265033 C G TP53TG3D Nonsense_Mutation p.S120* 0.06 TCGA-DK-A2I4-01 16 3274032 3274032 C T ZNF200 Missense_Mutation p.E350K 0.08 tolerated(0.44) possibly_damaging(0.596) TCGA-DK-A2I4-01 16 4310139 4310139 G A TFAP4 Silent p.V258V 0.11 TCGA-DK-A2I4-01 16 48177916 48177916 G A ABCC12 Silent p.L60L 0.10 TCGA-DK-A2I4-01 16 4934113 4934113 C G PPL Missense_Mutation p.E1515Q 0.13 deleterious(0) probably_damaging(0.99) TCGA-DK-A2I4-01 16 4934819 4934819 C T PPL Silent p.L1279L 0.17 TCGA-DK-A2I4-01 16 4934921 4934921 C T PPL Silent p.E1245E 0.12 TCGA-DK-A2I4-01 16 4935359 4935359 C T PPL Silent p.K1099K 0.11 TCGA-DK-A2I4-01 16 4939015 4939015 G C PPL Missense_Mutation p.I787M 0.10 tolerated(0.07) benign(0.418) TCGA-DK-A2I4-01 16 50745519 50745519 C G NOD2 Nonsense_Mutation p.S566* 0.09 TCGA-DK-A2I4-01 16 5145479 5145479 C T FAM86A Missense_Mutation p.E45K 0.15 tolerated(0.13) possibly_damaging(0.585) TCGA-DK-A2I4-01 16 54967531 54967531 C T IRX5 Missense_Mutation p.R400W 0.17 deleterious(0) unknown(0) TCGA-DK-A2I4-01 16 57695626 57695626 C G GPR56 Missense_Mutation p.S567C 0.13 deleterious(0) probably_damaging(0.95) TCGA-DK-A2I4-01 16 64981694 64981694 G A CDH11 Missense_Mutation p.P735S 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 16 65016069 65016069 C T CDH11 Missense_Mutation p.E379K 0.06 deleterious(0) probably_damaging(0.989) TCGA-DK-A2I4-01 16 66949265 66949265 G T CDH16 Missense_Mutation p.F147L 0.20 tolerated(0.39) possibly_damaging(0.792) TCGA-DK-A2I4-01 16 67183434 67183434 G C B3GNT9 Missense_Mutation p.L319V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A2I4-01 16 67183755 67183755 G C B3GNT9 Missense_Mutation p.L212V 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 16 67233112 67233112 G A ELMO3 Silent p.P14P 0.23 TCGA-DK-A2I4-01 16 676021 676021 C T RAB40C Silent p.V155V 0.13 TCGA-DK-A2I4-01 16 67985768 67985768 C T SLC12A4 Missense_Mutation p.E366K 0.14 tolerated(0.32) benign(0.012) TCGA-DK-A2I4-01 16 70517820 70517820 G A COG4 Missense_Mutation p.A588V 0.14 tolerated(0.23) benign(0.147) TCGA-DK-A2I4-01 16 70551628 70551628 C T COG4 Silent p.L90L 0.15 TCGA-DK-A2I4-01 16 71220736 71220736 G C HYDIN Missense_Mutation p.F21L 0.09 benign(0) TCGA-DK-A2I4-01 16 71571634 71571634 G A CHST4 Missense_Mutation p.D352N 0.09 tolerated(0.22) benign(0.024) TCGA-DK-A2I4-01 16 75661765 75661765 G C KARS 3'UTR 0.10 TCGA-DK-A2I4-01 16 75681495 75681495 C T KARS 5'UTR 0.13 TCGA-DK-A2I4-01 16 77393224 77393224 G A ADAMTS18 Missense_Mutation p.S438L 0.13 tolerated(0.14) probably_damaging(0.985) TCGA-DK-A2I4-01 16 81066306 81066306 G T CENPN 3'UTR 0.08 TCGA-DK-A2I4-01 16 88690429 88690429 C T ZC3H18 Silent p.I619I 0.13 TCGA-DK-A2I4-01 16 90002120 90002120 G A TUBB3 Missense_Mutation p.E421K 0.13 deleterious_low_confidence(0.02) benign(0.413) TCGA-DK-A2I4-01 17 10441042 10441042 G C MYH2 Missense_Mutation p.I509M 0.08 deleterious(0) probably_damaging(0.979) TCGA-DK-A2I4-01 17 10608412 10608412 G A ADPRM Missense_Mutation p.E57K 0.12 tolerated(0.47) benign(0.008) TCGA-DK-A2I4-01 17 15162452 15162452 G A PMP22 Missense_Mutation p.S46F 0.10 tolerated(0.13) benign(0.011) TCGA-DK-A2I4-01 17 15902870 15902870 C G TTC19 5'UTR 0.17 TCGA-DK-A2I4-01 17 16049769 16049769 C G NCOR1 Missense_Mutation p.E335Q 0.15 probably_damaging(0.995) TCGA-DK-A2I4-01 17 17700429 17700429 G A RAI1 Silent p.Q1389Q 0.15 TCGA-DK-A2I4-01 17 18881778 18881778 G A FAM83G Missense_Mutation p.H401Y 0.18 deleterious(0) benign(0.232) TCGA-DK-A2I4-01 17 19316427 19316427 C T RNF112 Silent p.L186L 0.06 TCGA-DK-A2I4-01 17 26687798 26687798 C G TMEM199 Missense_Mutation p.F153L 0.12 deleterious(0.05) probably_damaging(0.923) TCGA-DK-A2I4-01 17 26898550 26898550 G C PIGS 5'UTR 0.38 TCGA-DK-A2I4-01 17 26964034 26964034 G A KIAA0100 Silent p.L642L 0.14 TCGA-DK-A2I4-01 17 27186107 27186107 G A ERAL1 Silent p.Q362Q 0.11 TCGA-DK-A2I4-01 17 27419972 27419972 C T MYO18A Silent p.L1658L 0.15 TCGA-DK-A2I4-01 17 27943163 27943163 C T CORO6 Missense_Mutation p.D365N 0.12 deleterious(0.04) benign(0.444) TCGA-DK-A2I4-01 17 28890294 28890294 G A TBC1D29 Missense_Mutation p.E102K 0.11 tolerated(0.15) probably_damaging(0.953) TCGA-DK-A2I4-01 17 29490350 29490350 C T NF1 Silent p.L145L 0.13 TCGA-DK-A2I4-01 17 29849000 29849000 C T RAB11FIP4 Nonsense_Mutation p.Q276* 0.11 TCGA-DK-A2I4-01 17 30503214 30503214 G A RHOT1 Missense_Mutation p.R104K 0.09 tolerated(0.92) benign(0.022) TCGA-DK-A2I4-01 17 33288630 33288630 G C ZNF830 Silent p.V15V 0.13 TCGA-DK-A2I4-01 17 3337109 3337109 G A OR1E2 Silent p.I9I 0.11 TCGA-DK-A2I4-01 17 33586238 33586238 G C SLFN5 Missense_Mutation p.D177H 0.10 tolerated(0.05) benign(0.01) TCGA-DK-A2I4-01 17 33849810 33849810 A G SLFN12L 5'UTR 0.16 TCGA-DK-A2I4-01 17 35615184 35615184 G A ACACA Missense_Mutation p.P538S 0.11 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 17 35627678 35627678 G A ACACA Silent p.V361V 0.09 TCGA-DK-A2I4-01 17 3563994 3563994 C T CTNS Missense_Mutation p.T390I 0.10 deleterious_low_confidence(0.02) benign(0.112) TCGA-DK-A2I4-01 17 3593966 3593966 G A P2RX5 Silent p.G123G 0.14 TCGA-DK-A2I4-01 17 36482328 36482328 G C GPR179 3'UTR 0.08 TCGA-DK-A2I4-01 17 37810000 37810000 G C STARD3 Silent p.L72L 0.09 TCGA-DK-A2I4-01 17 37884048 37884048 C G ERBB2 Silent p.L1173L 0.13 TCGA-DK-A2I4-01 17 37884180 37884180 C T ERBB2 Silent p.F1217F 0.14 TCGA-DK-A2I4-01 17 37884322 37884322 C T ERBB2 3'UTR 0.28 TCGA-DK-A2I4-01 17 37947692 37947692 G A IKZF3 Missense_Mutation p.T190M 0.07 deleterious(0.05) probably_damaging(0.988) TCGA-DK-A2I4-01 17 37947694 37947694 G A IKZF3 Silent p.L189L 0.08 TCGA-DK-A2I4-01 17 38318321 38318321 G A CASC3 Missense_Mutation p.D175N 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-DK-A2I4-01 17 38928361 38928361 G C KRT26 Missense_Mutation p.S2C 0.13 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-DK-A2I4-01 17 3936223 3936223 C T ZZEF1 Missense_Mutation p.D2220N 0.18 tolerated(0.53) benign(0.003) TCGA-DK-A2I4-01 17 39671773 39671773 C T KRT15 Missense_Mutation p.E400K 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A2I4-01 17 40169363 40169363 C T DNAJC7 Silent p.A24A 0.13 TCGA-DK-A2I4-01 17 40481591 40481591 G A STAT3 Missense_Mutation p.S405F 0.09 deleterious(0.03) benign(0.444) TCGA-DK-A2I4-01 17 41879098 41879098 G A MPP3 Missense_Mutation p.H577Y 0.10 tolerated(0.2) benign(0.001) TCGA-DK-A2I4-01 17 42850646 42850646 C G ADAM11 Silent p.L281L 0.12 TCGA-DK-A2I4-01 17 45747074 45747074 G C KPNB1 Missense_Mutation p.D419H 0.12 deleterious(0) probably_damaging(0.991) TCGA-DK-A2I4-01 17 45748175 45748175 G A KPNB1 Silent p.Q508Q 0.14 TCGA-DK-A2I4-01 17 45909489 45909489 G A LRRC46 Missense_Mutation p.E12K 0.09 tolerated(0.3) benign(0.002) TCGA-DK-A2I4-01 17 47109291 47109291 G A IGF2BP1 Silent p.T119T 0.13 TCGA-DK-A2I4-01 17 47886483 47886483 G A KAT7 Silent p.V222V 0.10 TCGA-DK-A2I4-01 17 48155409 48155409 G A ITGA3 Splice_Site p.X714_splice 0.07 TCGA-DK-A2I4-01 17 48218657 48218657 G C PPP1R9B Silent p.L567L 0.13 TCGA-DK-A2I4-01 17 49233090 49233090 C T NME1 Silent p.I50I 0.07 TCGA-DK-A2I4-01 17 4927462 4927462 C T KIF1C 3'UTR 0.09 TCGA-DK-A2I4-01 17 53014503 53014503 C A TOM1L1 Missense_Mutation p.L317I 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 17 56082931 56082931 C G SRSF1 Missense_Mutation p.D195H 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 17 56606496 56606496 C T SEPT4 Intron 0.16 TCGA-DK-A2I4-01 17 58040624 58040624 C G RNFT1 Missense_Mutation p.K26N 0.12 tolerated(0.15) benign(0.056) TCGA-DK-A2I4-01 17 60814201 60814201 G C MARCH10 Missense_Mutation p.S343C 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-DK-A2I4-01 17 61566065 61566065 G A ACE Missense_Mutation p.E788K 0.09 tolerated(1) benign(0.019) TCGA-DK-A2I4-01 17 64880760 64880760 C T CACNG5 Silent p.I184I 0.15 TCGA-DK-A2I4-01 17 65925584 65925584 G A BPTF Missense_Mutation p.G2044E 0.16 possibly_damaging(0.875) TCGA-DK-A2I4-01 17 6719158 6719158 C T TEKT1 Silent p.Q160Q 0.06 TCGA-DK-A2I4-01 17 71348646 71348646 G A SDK2 Silent p.F1908F 0.07 TCGA-DK-A2I4-01 17 72348427 72348427 G A KIF19 Missense_Mutation p.G643D 0.08 tolerated(0.06) benign(0.03) TCGA-DK-A2I4-01 17 72846450 72846450 G C GRIN2C Silent p.L462L 0.09 TCGA-DK-A2I4-01 17 72859310 72859310 C T FDXR Missense_Mutation p.M454I 0.08 deleterious(0) benign(0.155) TCGA-DK-A2I4-01 17 73164461 73164461 G C SUMO2 Missense_Mutation p.F87L 0.16 deleterious(0.04) benign(0.041) TCGA-DK-A2I4-01 17 73663485 73663485 C G SAP30BP Silent p.L11L 0.14 TCGA-DK-A2I4-01 17 73753570 73753570 G C ITGB4 Silent p.V1801V 0.15 TCGA-DK-A2I4-01 17 73847712 73847712 C A WBP2 Missense_Mutation p.M35I 0.07 tolerated(0.19) benign(0.008) TCGA-DK-A2I4-01 17 73872363 73872363 C T TRIM47 Missense_Mutation p.D328N 0.27 deleterious(0.04) probably_damaging(0.974) TCGA-DK-A2I4-01 17 74077285 74077285 C G EXOC7 3'Flank 0.13 TCGA-DK-A2I4-01 17 7530992 7530992 C T SAT2 5'UTR 0.21 TCGA-DK-A2I4-01 17 76047219 76047219 G A TNRC6C Nonsense_Mutation p.W692* 0.22 TCGA-DK-A2I4-01 17 76089176 76089176 C T TNRC6C Missense_Mutation p.S1375L 0.10 deleterious(0) probably_damaging(0.99) TCGA-DK-A2I4-01 17 76113906 76113906 G C TMC6 Silent p.V666V 0.16 TCGA-DK-A2I4-01 17 76540022 76540022 C T DNAH17 Missense_Mutation p.D817N 0.14 benign(0.007) TCGA-DK-A2I4-01 17 7758849 7758849 C T TMEM88 Silent p.L99L 0.15 TCGA-DK-A2I4-01 17 78971126 78971126 G A CHMP6 Silent p.L160L 0.12 TCGA-DK-A2I4-01 17 7910802 7910802 G T GUCY2D Missense_Mutation p.D508Y 0.16 deleterious(0) possibly_damaging(0.613) TCGA-DK-A2I4-01 17 79479015 79479015 C A ACTG1 Nonsense_Mutation p.E93* 0.18 TCGA-DK-A2I4-01 17 79632293 79632293 C G OXLD1 Missense_Mutation p.D128H 0.07 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 17 79817199 79817199 C T P4HB Silent p.L70L 0.12 TCGA-DK-A2I4-01 17 80616443 80616443 G A RAB40B Silent p.I163I 0.03 TCGA-DK-A2I4-01 17 8192524 8192524 C T SLC25A35 3'UTR 0.12 TCGA-DK-A2I4-01 18 21355773 21355773 G A LAMA3 Missense_Mutation p.E431K 0.24 possibly_damaging(0.515) TCGA-DK-A2I4-01 18 23619259 23619259 G T SS18 Missense_Mutation p.Q257K 0.15 deleterious_low_confidence(0) benign(0.191) TCGA-DK-A2I4-01 18 30926330 30926330 G T CCDC178 Nonsense_Mutation p.S168* 0.12 TCGA-DK-A2I4-01 18 3131437 3131437 G C MYOM1 Silent p.V814V 0.21 TCGA-DK-A2I4-01 18 43467730 43467730 C G EPG5 Missense_Mutation p.E1699Q 0.20 deleterious(0) benign(0.136) TCGA-DK-A2I4-01 18 47101785 47101785 G C LIPG Missense_Mutation p.K206N 0.16 tolerated(0.26) benign(0.12) TCGA-DK-A2I4-01 18 47799277 47799277 C G MBD1 Missense_Mutation p.E545Q 0.18 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-DK-A2I4-01 18 47814025 47814025 C G CXXC1 5'Flank 0.13 TCGA-DK-A2I4-01 18 55273932 55273932 C G NARS Silent p.L351L 0.13 TCGA-DK-A2I4-01 18 56247584 56247584 C T ALPK2 Missense_Mutation p.E142K 0.16 tolerated(0.06) benign(0.417) TCGA-DK-A2I4-01 18 6896547 6896547 C G ARHGAP28 Missense_Mutation p.S492C 0.15 deleterious(0) possibly_damaging(0.896) TCGA-DK-A2I4-01 18 70205477 70205477 C T CBLN2 Silent p.E203E 0.08 TCGA-DK-A2I4-01 18 72343136 72343136 C T ZNF407 Missense_Mutation p.S54L 0.23 tolerated(0.06) benign(0.004) TCGA-DK-A2I4-01 18 74962762 74962762 C G GALR1 Silent p.L86L 0.22 TCGA-DK-A2I4-01 19 10577958 10577958 G T PDE4A Silent p.L774L 0.09 TCGA-DK-A2I4-01 19 10577959 10577959 G A PDE4A Missense_Mutation p.E775K 0.10 deleterious_low_confidence(0) benign(0.003) TCGA-DK-A2I4-01 19 1123979 1123979 G A SBNO2 Silent p.L162L 0.09 TCGA-DK-A2I4-01 19 11286644 11286644 G A KANK2 Silent p.L602L 0.09 TCGA-DK-A2I4-01 19 11448060 11448060 C T RAB3D Missense_Mutation p.D6N 0.11 deleterious_low_confidence(0.01) benign(0.305) TCGA-DK-A2I4-01 19 12639430 12639430 G C ZNF564 Silent p.L28L 0.10 TCGA-DK-A2I4-01 19 12739580 12739580 G T ZNF791 Nonsense_Mutation p.E413* 0.08 TCGA-DK-A2I4-01 19 12740000 12740000 G A ZNF791 Missense_Mutation p.E553K 0.20 tolerated(0.21) benign(0.041) TCGA-DK-A2I4-01 19 12969528 12969528 C T MAST1 Silent p.L447L 0.16 TCGA-DK-A2I4-01 19 13007041 13007041 G A GCDH Missense_Mutation p.D220N 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-DK-A2I4-01 19 13054368 13054368 C T CALR Silent p.I326I 0.11 TCGA-DK-A2I4-01 19 13056678 13056678 G A RAD23A 5'Flank 0.21 TCGA-DK-A2I4-01 19 13059132 13059132 G C RAD23A Missense_Mutation p.E126Q 0.06 tolerated(0.17) benign(0.237) TCGA-DK-A2I4-01 19 1461973 1461973 G A APC2 Silent p.L550L 0.11 TCGA-DK-A2I4-01 19 1462069 1462069 G T APC2 Silent p.V582V 0.13 TCGA-DK-A2I4-01 19 15853149 15853149 C G OR10H3 Missense_Mutation p.S316C 0.11 deleterious(0) possibly_damaging(0.867) TCGA-DK-A2I4-01 19 17533066 17533066 C T MVB12A Intron 0.12 TCGA-DK-A2I4-01 19 17883460 17883460 G A FCHO1 Missense_Mutation p.E234K 0.13 tolerated(0.19) probably_damaging(0.977) TCGA-DK-A2I4-01 19 1811570 1811570 C T ATP8B3 Missense_Mutation p.D56N 0.09 deleterious(0.02) benign(0.421) TCGA-DK-A2I4-01 19 1811737 1811737 C T ATP8B3 5'UTR 0.12 TCGA-DK-A2I4-01 19 18391519 18391519 G C JUND Missense_Mutation p.S259W 0.16 deleterious(0) probably_damaging(0.984) TCGA-DK-A2I4-01 19 18507660 18507660 G A LRRC25 Silent p.F38F 0.14 TCGA-DK-A2I4-01 19 18632761 18632761 C T ELL Silent p.L35L 0.21 TCGA-DK-A2I4-01 19 18684188 18684188 C G UBA52 Silent p.V26V 0.14 TCGA-DK-A2I4-01 19 19033503 19033503 C T DDX49 Silent p.F242F 0.12 TCGA-DK-A2I4-01 19 2222186 2222186 C G DOT1L Silent p.L1006L 0.12 TCGA-DK-A2I4-01 19 2876263 2876263 G A ZNF556 Silent p.E101E 0.13 TCGA-DK-A2I4-01 19 3017853 3017853 C T TLE2 Silent p.E185E 0.09 TCGA-DK-A2I4-01 19 3019709 3019709 G C TLE2 Missense_Mutation p.N119K 0.15 deleterious(0) benign(0.162) TCGA-DK-A2I4-01 19 30505917 30505917 G A URI1 Missense_Mutation p.E517K 0.13 deleterious(0.01) probably_damaging(0.916) TCGA-DK-A2I4-01 19 3186015 3186015 C T NCLN 5'UTR 0.11 TCGA-DK-A2I4-01 19 33135288 33135288 G A ANKRD27 Silent p.I156I 0.20 TCGA-DK-A2I4-01 19 35449696 35449696 G A ZNF792 Nonsense_Mutation p.Q355* 0.18 TCGA-DK-A2I4-01 19 35625566 35625566 G T LGI4 Missense_Mutation p.L7M 0.13 tolerated(0.15) unknown(0) TCGA-DK-A2I4-01 19 35642244 35642244 C T FXYD7 Intron 0.24 TCGA-DK-A2I4-01 19 36219890 36219890 C T KMT2B Silent p.F1564F 0.09 TCGA-DK-A2I4-01 19 36545042 36545042 G C THAP8 Missense_Mutation p.F26L 0.12 deleterious(0.05) possibly_damaging(0.851) TCGA-DK-A2I4-01 19 37005801 37005801 C T ZNF260 Missense_Mutation p.E114K 0.17 tolerated(0.43) benign(0) TCGA-DK-A2I4-01 19 37038544 37038544 C T ZNF529 Missense_Mutation p.D306N 0.18 tolerated(0.06) probably_damaging(0.964) TCGA-DK-A2I4-01 19 38190626 38190626 G A ZNF607 Missense_Mutation p.H136Y 0.12 deleterious(0.05) probably_damaging(0.934) TCGA-DK-A2I4-01 19 38692599 38692599 G T SIPA1L3 Missense_Mutation p.E1694D 0.09 tolerated(0.29) benign(0.036) TCGA-DK-A2I4-01 19 38860798 38860798 G A CATSPERG Splice_Site p.X1038_splice 0.21 TCGA-DK-A2I4-01 19 39114742 39114742 C T EIF3K Nonsense_Mutation p.Q62* 0.08 TCGA-DK-A2I4-01 19 39292471 39292471 G A LGALS4 Missense_Mutation p.S302L 0.11 tolerated(0.25) benign(0.011) TCGA-DK-A2I4-01 19 39879228 39879228 C T PAF1 Missense_Mutation p.E277K 0.23 tolerated(0.1) possibly_damaging(0.472) TCGA-DK-A2I4-01 19 39879261 39879261 C T PAF1 Missense_Mutation p.E266K 0.18 deleterious(0.01) possibly_damaging(0.714) TCGA-DK-A2I4-01 19 4154998 4154998 G A CREB3L3 Missense_Mutation p.E44K 0.13 tolerated(0.14) benign(0.01) TCGA-DK-A2I4-01 19 42354706 42354706 T C DMRTC2 Missense_Mutation p.V310A 0.20 tolerated(0.19) benign(0.051) TCGA-DK-A2I4-01 19 42509942 42509942 G A GRIK5 Silent p.L732L 0.09 TCGA-DK-A2I4-01 19 42728868 42728868 G A ZNF526 Missense_Mutation p.E105K 0.07 deleterious(0.02) benign(0.024) TCGA-DK-A2I4-01 19 42798383 42798383 C A CIC Silent p.S1418S 0.23 TCGA-DK-A2I4-01 19 4345945 4345945 C G MPND Missense_Mutation p.H166Q 0.08 tolerated(0.31) benign(0.065) TCGA-DK-A2I4-01 19 43864482 43864482 G A CD177 3'UTR 0.13 TCGA-DK-A2I4-01 19 44160637 44160637 C T PLAUR Missense_Mutation p.E156K 0.10 tolerated(0.84) possibly_damaging(0.887) TCGA-DK-A2I4-01 19 4446589 4446589 G C UBXN6 Silent p.V276V 0.09 TCGA-DK-A2I4-01 19 44470216 44470216 C T ZNF221 Missense_Mutation p.H188Y 0.23 tolerated(0.07) possibly_damaging(0.814) TCGA-DK-A2I4-01 19 44832181 44832181 G A ZNF112 Missense_Mutation p.S716F 0.14 deleterious(0) possibly_damaging(0.723) TCGA-DK-A2I4-01 19 45287647 45287647 G A CBLC Silent p.Q302Q 0.17 TCGA-DK-A2I4-01 19 4538477 4538477 C T LRG1 Silent p.G173G 0.14 TCGA-DK-A2I4-01 19 45490661 45490661 G A CLPTM1 Missense_Mutation p.E340K 0.12 deleterious(0) possibly_damaging(0.507) TCGA-DK-A2I4-01 19 46094942 46094942 G C GPR4 Missense_Mutation p.I61M 0.07 deleterious(0.04) possibly_damaging(0.739) TCGA-DK-A2I4-01 19 46094948 46094948 G A GPR4 Silent p.L59L 0.05 TCGA-DK-A2I4-01 19 46174547 46174547 C T GIPR Silent p.L59L 0.11 TCGA-DK-A2I4-01 19 48244378 48244378 G A EHD2 Missense_Mutation p.E441K 0.12 tolerated(0.06) benign(0.158) TCGA-DK-A2I4-01 19 4839179 4839179 G T PLIN3 3'UTR 0.11 TCGA-DK-A2I4-01 19 49652018 49652018 G A PPFIA3 Missense_Mutation p.R1036Q 0.09 tolerated(0.08) benign(0.005) TCGA-DK-A2I4-01 19 49840236 49840236 C T CD37 Silent p.I71I 0.19 TCGA-DK-A2I4-01 19 50413062 50413062 C T NUP62 Translation_Start_Site p.M1? 0.12 tolerated(0.11) unknown(0) TCGA-DK-A2I4-01 19 51848565 51848565 G A ETFB Missense_Mutation p.S314F 0.10 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-DK-A2I4-01 19 53056414 53056414 G C ZNF808 Missense_Mutation p.R82T 0.11 tolerated(0.79) benign(0) TCGA-DK-A2I4-01 19 53270485 53270485 G A ZNF600 Missense_Mutation p.S175L 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-DK-A2I4-01 19 53572607 53572607 C G ZNF160 Missense_Mutation p.E394Q 0.07 deleterious(0.02) probably_damaging(0.932) TCGA-DK-A2I4-01 19 53643596 53643596 C G ZNF347 Missense_Mutation p.E830Q 0.20 tolerated_low_confidence(0.38) benign(0) TCGA-DK-A2I4-01 19 54657442 54657442 C A CNOT3 Intron 0.12 TCGA-DK-A2I4-01 19 54692090 54692090 G A MBOAT7 Missense_Mutation p.L63F 0.05 deleterious(0.01) benign(0.391) TCGA-DK-A2I4-01 19 54942276 54942276 G A TTYH1 Splice_Site p.X345_splice 0.18 TCGA-DK-A2I4-01 19 55286739 55286739 G A KIR2DL1 Missense_Mutation p.E165K 0.25 tolerated(0.21) possibly_damaging(0.789) TCGA-DK-A2I4-01 19 55453052 55453052 G A NLRP7 Silent p.L10L 0.12 TCGA-DK-A2I4-01 19 55686641 55686641 G A SYT5 Missense_Mutation p.R203C 0.08 deleterious(0) probably_damaging(0.953) TCGA-DK-A2I4-01 19 56329303 56329303 C G NLRP11 Missense_Mutation p.D80H 0.08 deleterious(0) probably_damaging(0.975) TCGA-DK-A2I4-01 19 56382323 56382323 G A NLRP4 Missense_Mutation p.E829K 0.10 tolerated(0.43) benign(0.036) TCGA-DK-A2I4-01 19 56688513 56688513 C T GALP Silent p.L12L 0.08 TCGA-DK-A2I4-01 19 57640824 57640824 G C USP29 Missense_Mutation p.E261Q 0.05 tolerated(0.27) benign(0.047) TCGA-DK-A2I4-01 19 57640872 57640872 G A USP29 Missense_Mutation p.D277N 0.14 tolerated(0.18) benign(0.036) TCGA-DK-A2I4-01 19 57641088 57641088 G A USP29 Missense_Mutation p.E349K 0.06 tolerated(1) benign(0.196) TCGA-DK-A2I4-01 19 57641253 57641253 G A USP29 Missense_Mutation p.E404K 0.08 tolerated(0.23) benign(0.029) TCGA-DK-A2I4-01 19 57642875 57642875 G A USP29 3'UTR 0.15 TCGA-DK-A2I4-01 19 57723168 57723168 G C ZNF264 Missense_Mutation p.E235Q 0.10 deleterious(0.01) benign(0.36) TCGA-DK-A2I4-01 19 58117277 58117277 G A ZNF530 Nonsense_Mutation p.W128* 0.28 TCGA-DK-A2I4-01 19 58490857 58490857 C G ZNF606 Missense_Mutation p.E397D 0.08 deleterious(0.05) benign(0.002) TCGA-DK-A2I4-01 19 59059693 59059693 G A TRIM28 Missense_Mutation p.M378I 0.07 deleterious(0.02) benign(0.168) TCGA-DK-A2I4-01 19 7166277 7166277 G C INSR Silent p.L583L 0.09 TCGA-DK-A2I4-01 19 746781 746781 G A PALM Silent p.K377K 0.15 TCGA-DK-A2I4-01 19 7523533 7523533 G A ARHGEF18 Missense_Mutation p.D585N 0.15 deleterious(0) possibly_damaging(0.744) TCGA-DK-A2I4-01 19 7960596 7960596 C G LRRC8E Silent p.L36L 0.10 TCGA-DK-A2I4-01 19 814710 814710 G A LPPR3 Silent p.F213F 0.11 TCGA-DK-A2I4-01 19 8175799 8175799 G A FBN3 Silent p.N1421N 0.15 TCGA-DK-A2I4-01 19 8436122 8436122 C T ANGPTL4 Intron 0.13 TCGA-DK-A2I4-01 19 8438619 8438619 C G ANGPTL4 Missense_Mutation p.S357C 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 19 8661945 8661945 C T ADAMTS10 Silent p.V322V 0.09 TCGA-DK-A2I4-01 19 9002669 9002669 C T MUC16 Missense_Mutation p.E13383K 0.10 probably_damaging(0.969) TCGA-DK-A2I4-01 19 9062124 9062124 G T MUC16 Missense_Mutation p.P8441H 0.15 unknown(0) TCGA-DK-A2I4-01 19 9091500 9091500 C T MUC16 Silent p.L105L 0.13 TCGA-DK-A2I4-01 19 9529234 9529234 C T ZNF266 5'UTR 0.07 TCGA-DK-A2I4-01 19 9873968 9873968 G A ZNF846 Silent p.L44L 0.14 TCGA-DK-A2I4-01 19 9967498 9967498 G A OLFM2 Silent p.P224P 0.16 TCGA-DK-A2I4-01 1 100613836 100613836 G A TRMT13 Missense_Mutation p.D402N 0.12 tolerated(0.24) benign(0.094) TCGA-DK-A2I4-01 1 101004982 101004982 C T GPR88 Nonsense_Mutation p.Q154* 0.11 TCGA-DK-A2I4-01 1 101194797 101194797 C G VCAM1 Missense_Mutation p.L355V 0.11 deleterious(0.04) probably_damaging(0.946) TCGA-DK-A2I4-01 1 101361836 101361836 C G SLC30A7 Missense_Mutation p.I6M 0.11 tolerated(0.22) benign(0.011) TCGA-DK-A2I4-01 1 101705413 101705413 C T S1PR1 Silent p.F291F 0.10 TCGA-DK-A2I4-01 1 10523047 10523047 C G DFFA Intron 0.17 TCGA-DK-A2I4-01 1 10523212 10523212 C G DFFA Missense_Mutation p.R229T 0.12 tolerated(0.7) benign(0.005) TCGA-DK-A2I4-01 1 110555027 110555027 G A AHCYL1 Silent p.E140E 0.10 TCGA-DK-A2I4-01 1 110716657 110716657 C G SLC6A17 Missense_Mutation p.F169L 0.13 tolerated(0.31) possibly_damaging(0.566) TCGA-DK-A2I4-01 1 111436954 111436954 C T CD53 Silent p.F86F 0.06 TCGA-DK-A2I4-01 1 113058964 113058964 C T WNT2B Silent p.F202F 0.10 TCGA-DK-A2I4-01 1 113464733 113464733 C T SLC16A1 Silent p.V80V 0.08 TCGA-DK-A2I4-01 1 114133225 114133225 C G MAGI3 Missense_Mutation p.L295V 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 1 114515811 114515811 C T HIPK1 Missense_Mutation p.H1104Y 0.10 tolerated(0.12) possibly_damaging(0.824) TCGA-DK-A2I4-01 1 115319033 115319033 C T SIKE1 Missense_Mutation p.M156I 0.05 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 1 115319072 115319072 C G SIKE1 Missense_Mutation p.E143D 0.06 tolerated(0.18) possibly_damaging(0.648) TCGA-DK-A2I4-01 1 1179861 1179861 C T FAM132A Missense_Mutation p.G65E 0.15 tolerated(0.17) probably_damaging(0.909) TCGA-DK-A2I4-01 1 120438390 120438390 C T ADAM30 Silent p.A190A 0.06 TCGA-DK-A2I4-01 1 12061571 12061571 C G MFN2 Silent p.L310L 0.19 TCGA-DK-A2I4-01 1 12175755 12175755 C G TNFRSF8 Missense_Mutation p.I305M 0.12 deleterious(0.03) possibly_damaging(0.62) TCGA-DK-A2I4-01 1 12322040 12322040 G A VPS13D Silent p.L499L 0.14 TCGA-DK-A2I4-01 1 12339681 12339681 G A VPS13D Missense_Mutation p.E1526K 0.14 possibly_damaging(0.888) TCGA-DK-A2I4-01 1 145311808 145311808 G A NBPF10 Intron 0.10 TCGA-DK-A2I4-01 1 145522591 145522591 C T PEX11B Missense_Mutation p.S151F 0.12 deleterious(0.02) possibly_damaging(0.574) TCGA-DK-A2I4-01 1 145687020 145687020 G A RNF115 Missense_Mutation p.E238K 0.09 deleterious(0.04) benign(0.01) TCGA-DK-A2I4-01 1 145687023 145687023 G A RNF115 Missense_Mutation p.E239K 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 1 147400652 147400652 G C GPR89B Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0.01) benign(0.073) TCGA-DK-A2I4-01 1 14925613 14925613 G C KAZN Silent p.L40L 0.11 TCGA-DK-A2I4-01 1 149921589 149921589 G C OTUD7B Missense_Mutation p.Q356E 0.07 deleterious(0.01) probably_damaging(0.975) TCGA-DK-A2I4-01 1 149921612 149921612 G T OTUD7B Missense_Mutation p.S348Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 1 150483939 150483939 G A ECM1 Missense_Mutation p.E266K 0.09 tolerated(0.19) benign(0.047) TCGA-DK-A2I4-01 1 151018574 151018574 G A BNIPL Missense_Mutation p.D324N 0.12 tolerated(0.99) benign(0.014) TCGA-DK-A2I4-01 1 152195753 152195753 A C HRNR Intron 0.12 TCGA-DK-A2I4-01 1 152279987 152279987 G C FLG Missense_Mutation p.Q2459E 0.11 possibly_damaging(0.871) TCGA-DK-A2I4-01 1 152324509 152324509 C T FLG2 Missense_Mutation p.R1918K 0.08 probably_damaging(0.963) TCGA-DK-A2I4-01 1 152325449 152325449 G C FLG2 Missense_Mutation p.Q1605E 0.12 benign(0.217) TCGA-DK-A2I4-01 1 152944474 152944474 G A SPRR4 Silent p.E36E 0.12 TCGA-DK-A2I4-01 1 152944534 152944534 G A SPRR4 Silent p.P56P 0.09 TCGA-DK-A2I4-01 1 152976029 152976029 G T SPRR3 3'UTR 0.16 TCGA-DK-A2I4-01 1 153604116 153604116 C T S100A1 Intron 0.10 TCGA-DK-A2I4-01 1 154842073 154842073 G A KCNN3 Missense_Mutation p.S123F 0.09 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-DK-A2I4-01 1 154987446 154987446 G C ZBTB7B Missense_Mutation p.E138Q 0.06 deleterious(0.01) benign(0.427) TCGA-DK-A2I4-01 1 154988052 154988052 G C ZBTB7B Missense_Mutation p.D340H 0.07 deleterious(0.01) possibly_damaging(0.802) TCGA-DK-A2I4-01 1 155292224 155292224 C T RUSC1 Silent p.I220I 0.08 TCGA-DK-A2I4-01 1 155295001 155295001 G A RUSC1 Intron 0.07 TCGA-DK-A2I4-01 1 155450002 155450002 G C ASH1L Missense_Mutation p.P887A 0.09 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-DK-A2I4-01 1 155450149 155450149 G C ASH1L Missense_Mutation p.Q838E 0.07 tolerated_low_confidence(0.47) benign(0.001) TCGA-DK-A2I4-01 1 155717705 155717705 G A GON4L 3'Flank 0.14 TCGA-DK-A2I4-01 1 155774800 155774800 C G GON4L Missense_Mutation p.D529H 0.09 deleterious(0) probably_damaging(0.934) TCGA-DK-A2I4-01 1 156438787 156438787 G A MEF2D Silent p.L344L 0.13 TCGA-DK-A2I4-01 1 156565223 156565223 C T GPATCH4 Missense_Mutation p.E304K 0.12 tolerated_low_confidence(0.09) benign(0.01) TCGA-DK-A2I4-01 1 156594397 156594397 G A HAPLN2 Nonsense_Mutation p.W187* 0.08 TCGA-DK-A2I4-01 1 156642912 156642912 G T NES Silent p.L356L 0.14 TCGA-DK-A2I4-01 1 156815422 156815422 G A INSRR Silent p.I721I 0.08 TCGA-DK-A2I4-01 1 156830838 156830838 G A NTRK1 Missense_Mutation p.D38N 0.25 tolerated(0.25) benign(0.02) TCGA-DK-A2I4-01 1 158632519 158632519 C T SPTA1 Missense_Mutation p.E813K 0.11 tolerated(0.08) benign(0.094) TCGA-DK-A2I4-01 1 15986462 15986462 C G RSC1A1 Silent p.V33V 0.15 TCGA-DK-A2I4-01 1 15986581 15986581 C A RSC1A1 Missense_Mutation p.S73Y 0.17 deleterious(0) possibly_damaging(0.544) TCGA-DK-A2I4-01 1 15987253 15987253 C A RSC1A1 Nonsense_Mutation p.S297* 0.11 TCGA-DK-A2I4-01 1 15987285 15987285 C T RSC1A1 Nonsense_Mutation p.Q308* 0.10 TCGA-DK-A2I4-01 1 15987441 15987441 C T RSC1A1 Missense_Mutation p.H360Y 0.23 deleterious(0) probably_damaging(0.982) TCGA-DK-A2I4-01 1 15988048 15988048 C G RSC1A1 Nonsense_Mutation p.S562* 0.18 TCGA-DK-A2I4-01 1 160389332 160389332 C T VANGL2 Nonsense_Mutation p.Q245* 0.05 TCGA-DK-A2I4-01 1 16053943 16053943 C T PLEKHM2 Missense_Mutation p.S459L 0.45 tolerated_low_confidence(0.17) benign(0.002) TCGA-DK-A2I4-01 1 161276525 161276525 G A MPZ Nonsense_Mutation p.Q141* 0.10 TCGA-DK-A2I4-01 1 161596168 161596168 C T FCGR3B Missense_Mutation p.R151Q 0.09 tolerated(0.57) benign(0.004) TCGA-DK-A2I4-01 1 161681858 161681858 G A FCRLA Missense_Mutation p.D235N 0.10 tolerated(0.32) benign(0.25) TCGA-DK-A2I4-01 1 161993194 161993194 G A OLFML2B Silent p.L9L 0.09 TCGA-DK-A2I4-01 1 162367106 162367106 C A SH2D1B Splice_Site p.X122_splice 0.10 TCGA-DK-A2I4-01 1 167367230 167367230 G A POU2F1 Splice_Site p.X377_splice 0.19 TCGA-DK-A2I4-01 1 167653186 167653186 C A RCSD1 Nonsense_Mutation p.S19* 0.11 TCGA-DK-A2I4-01 1 167849781 167849781 G A ADCY10 Silent p.L363L 0.11 TCGA-DK-A2I4-01 1 169437922 169437922 C G SLC19A2 Missense_Mutation p.V395L 0.09 tolerated(0.28) benign(0.003) TCGA-DK-A2I4-01 1 169446801 169446801 G A SLC19A2 Silent p.I133I 0.09 TCGA-DK-A2I4-01 1 169512269 169512269 C T F5 Missense_Mutation p.D687N 0.10 tolerated(0.17) benign(0.05) TCGA-DK-A2I4-01 1 173454533 173454533 G A PRDX6 Missense_Mutation p.E96K 0.07 tolerated(0.78) benign(0.002) TCGA-DK-A2I4-01 1 174417291 174417291 G T GPR52 Missense_Mutation p.M14I 0.11 tolerated_low_confidence(0.38) benign(0) TCGA-DK-A2I4-01 1 175097777 175097777 G A TNN Silent p.Q1075Q 0.29 TCGA-DK-A2I4-01 1 175372540 175372540 C T TNR Missense_Mutation p.D238N 0.08 tolerated(0.19) benign(0.027) TCGA-DK-A2I4-01 1 176833599 176833599 G A ASTN1 Missense_Mutation p.L1236F 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A2I4-01 1 177937001 177937001 G C SEC16B Missense_Mutation p.S39C 0.11 deleterious(0.02) possibly_damaging(0.503) TCGA-DK-A2I4-01 1 179054980 179054980 C T TOR3A Silent p.F197F 0.11 TCGA-DK-A2I4-01 1 179883175 179883175 C G TOR1AIP1 Nonsense_Mutation p.S317* 0.07 TCGA-DK-A2I4-01 1 180166593 180166593 C G QSOX1 3'UTR 0.13 TCGA-DK-A2I4-01 1 186037086 186037086 G A HMCN1 Nonsense_Mutation p.W2609* 0.22 TCGA-DK-A2I4-01 1 186322838 186322838 C T TPR Silent p.E772E 0.11 TCGA-DK-A2I4-01 1 190250836 190250836 C T BRINP3 Missense_Mutation p.R94K 0.23 tolerated(0.55) benign(0.137) TCGA-DK-A2I4-01 1 193091266 193091266 G C CDC73 5'UTR 0.18 TCGA-DK-A2I4-01 1 20005075 20005075 C A HTR6 Missense_Mutation p.R244S 0.13 tolerated(0.99) benign(0.013) TCGA-DK-A2I4-01 1 201437671 201437671 C T PHLDA3 Missense_Mutation p.E82K 0.32 deleterious(0) probably_damaging(0.987) TCGA-DK-A2I4-01 1 201965372 201965372 G A RNPEP Missense_Mutation p.G279R 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 1 204380542 204380542 C T PPP1R15B 5'UTR 0.08 TCGA-DK-A2I4-01 1 205628553 205628553 C A SLC45A3 Missense_Mutation p.D491Y 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-DK-A2I4-01 1 206224493 206224493 C G AVPR1B Missense_Mutation p.S18C 0.17 tolerated(0.05) possibly_damaging(0.625) TCGA-DK-A2I4-01 1 206821558 206821558 G C DYRK3 Missense_Mutation p.E339Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-DK-A2I4-01 1 206821678 206821678 G C DYRK3 Missense_Mutation p.E379Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 1 206821905 206821905 G A DYRK3 Silent p.V454V 0.08 TCGA-DK-A2I4-01 1 207679266 207679266 G A CR1 Missense_Mutation p.E47K 0.20 tolerated_low_confidence(0.14) benign(0.213) TCGA-DK-A2I4-01 1 20944968 20944968 C T CDA Silent p.Y116Y 0.14 TCGA-DK-A2I4-01 1 209968639 209968639 G A IRF6 Silent p.I168I 0.23 TCGA-DK-A2I4-01 1 215916588 215916588 G A USH2A Nonsense_Mutation p.Q3827* 0.24 TCGA-DK-A2I4-01 1 22074665 22074665 G C USP48 Missense_Mutation p.L292V 0.14 deleterious(0) probably_damaging(0.98) TCGA-DK-A2I4-01 1 226555291 226555291 C T PARP1 Missense_Mutation p.D766N 0.26 deleterious(0.03) benign(0.324) TCGA-DK-A2I4-01 1 226567866 226567866 C G PARP1 Splice_Site p.X434_splice 0.09 TCGA-DK-A2I4-01 1 228210479 228210479 G T WNT3A Missense_Mutation p.E61D 0.20 tolerated(0.32) benign(0.029) TCGA-DK-A2I4-01 1 228466439 228466439 G A OBSCN Silent p.E2732E 0.22 TCGA-DK-A2I4-01 1 232615474 232615474 C T SIPA1L2 Missense_Mutation p.D662N 0.23 deleterious(0) probably_damaging(0.995) TCGA-DK-A2I4-01 1 235292007 235292007 G A TOMM20 Silent p.I8I 0.31 TCGA-DK-A2I4-01 1 235345386 235345386 C T ARID4B Missense_Mutation p.E950K 0.18 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DK-A2I4-01 1 235920623 235920623 G A LYST Silent p.L2339L 0.11 TCGA-DK-A2I4-01 1 236212147 236212147 C T NID1 Missense_Mutation p.R123Q 0.24 deleterious(0) probably_damaging(0.949) TCGA-DK-A2I4-01 1 24077712 24077712 C T TCEB3 Missense_Mutation p.S232L 0.08 tolerated(0.8) benign(0.001) TCGA-DK-A2I4-01 1 24078045 24078045 C G TCEB3 Nonsense_Mutation p.S343* 0.12 TCGA-DK-A2I4-01 1 243328189 243328189 C T CEP170 Missense_Mutation p.D1025N 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 1 244868944 244868944 G A DESI2 Silent p.P146P 0.23 TCGA-DK-A2I4-01 1 247587980 247587980 C T NLRP3 Missense_Mutation p.P412L 0.05 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 1 249106422 249106422 G A SH3BP5L Missense_Mutation p.R287W 0.13 deleterious(0) probably_damaging(0.924) TCGA-DK-A2I4-01 1 249144405 249144405 G C ZNF692 3'UTR 0.08 TCGA-DK-A2I4-01 1 27216180 27216180 G A GPN2 Silent p.L136L 0.12 TCGA-DK-A2I4-01 1 27950379 27950379 C A FGR Nonsense_Mutation p.E17* 0.14 TCGA-DK-A2I4-01 1 28290051 28290051 G C XKR8 Missense_Mutation p.E113Q 0.11 tolerated(0.1) benign(0.063) TCGA-DK-A2I4-01 1 28365386 28365386 G T EYA3 Nonsense_Mutation p.S63* 0.10 TCGA-DK-A2I4-01 1 28907505 28907505 C G TRNAU1AP 3'Flank 0.10 TCGA-DK-A2I4-01 1 29030720 29030720 C T GMEB1 Silent p.F259F 0.04 TCGA-DK-A2I4-01 1 32502561 32502561 G C KHDRBS1 Missense_Mutation p.L274F 0.12 deleterious(0) probably_damaging(0.933) TCGA-DK-A2I4-01 1 33613176 33613176 C A TRIM62 Nonsense_Mutation p.E344* 0.09 TCGA-DK-A2I4-01 1 3548774 3548774 G C WRAP73 Intron 0.13 TCGA-DK-A2I4-01 1 35916018 35916018 C T KIAA0319L Missense_Mutation p.D719N 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 1 36564281 36564281 C G COL8A2 Missense_Mutation p.G334A 0.09 deleterious(0) unknown(0) TCGA-DK-A2I4-01 1 36564306 36564306 C G COL8A2 Missense_Mutation p.D326H 0.10 tolerated(0.22) unknown(0) TCGA-DK-A2I4-01 1 36564482 36564482 C A COL8A2 Missense_Mutation p.G267V 0.16 deleterious(0) unknown(0) TCGA-DK-A2I4-01 1 3662532 3662532 G A TP73-AS1 RNA 0.17 TCGA-DK-A2I4-01 1 36939118 36939118 C G CSF3R Missense_Mutation p.Q197H 0.14 deleterious(0) possibly_damaging(0.896) TCGA-DK-A2I4-01 1 37271815 37271815 G A GRIK3 Missense_Mutation p.A735V 0.09 deleterious(0.01) probably_damaging(1) TCGA-DK-A2I4-01 1 38041280 38041280 C T GNL2 Silent p.L353L 0.14 TCGA-DK-A2I4-01 1 38446330 38446330 C G SF3A3 Missense_Mutation p.Q206H 0.09 tolerated(0.16) benign(0.005) TCGA-DK-A2I4-01 1 38511339 38511339 G C POU3F1 Silent p.L359L 0.16 TCGA-DK-A2I4-01 1 39876717 39876717 G A KIAA0754 Silent p.P124P 0.14 TCGA-DK-A2I4-01 1 40945004 40945004 G C ZFP69 5'UTR 0.17 TCGA-DK-A2I4-01 1 41012608 41012608 C T ZNF684 Missense_Mutation p.H205Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 1 43675708 43675708 C T WDR65 Missense_Mutation p.H684Y 0.08 tolerated_low_confidence(0.08) benign(0) TCGA-DK-A2I4-01 1 44474107 44474107 G A SLC6A9 Missense_Mutation p.R243W 0.12 tolerated(0.1) benign(0) TCGA-DK-A2I4-01 1 45293690 45293690 G A PTCH2 Missense_Mutation p.S628F 0.17 tolerated(0.1) benign(0.142) TCGA-DK-A2I4-01 1 46972824 46972824 G A DMBX1 Missense_Mutation p.E48K 0.18 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 1 48918750 48918750 G A SPATA6 Silent p.I35I 0.11 TCGA-DK-A2I4-01 1 52704969 52704969 C T ZFYVE9 Missense_Mutation p.S627L 0.13 tolerated(0.27) benign(0.002) TCGA-DK-A2I4-01 1 55119580 55119580 G A MROH7 Missense_Mutation p.M327I 0.08 deleterious_low_confidence(0.02) benign(0.067) TCGA-DK-A2I4-01 1 55139782 55139782 G A MROH7 Missense_Mutation p.D632N 0.10 deleterious(0.03) probably_damaging(0.928) TCGA-DK-A2I4-01 1 55457567 55457567 G A TMEM61 Missense_Mutation p.E142K 0.11 deleterious(0.04) probably_damaging(0.956) TCGA-DK-A2I4-01 1 63005436 63005436 G A DOCK7 Missense_Mutation p.S1027L 0.10 deleterious(0.03) benign(0.088) TCGA-DK-A2I4-01 1 65303766 65303766 G A JAK1 Missense_Mutation p.R997W 0.10 deleterious(0.01) possibly_damaging(0.861) TCGA-DK-A2I4-01 1 67395948 67395948 G T MIER1 Intron 0.15 TCGA-DK-A2I4-01 1 68564388 68564388 G A WLS Missense_Mutation p.S520L 0.06 deleterious_low_confidence(0.01) benign(0.101) TCGA-DK-A2I4-01 1 78444569 78444569 C T FUBP1 Silent p.Q40Q 0.10 TCGA-DK-A2I4-01 1 82434966 82434966 C T LPHN2 Silent p.F859F 0.09 TCGA-DK-A2I4-01 1 85498382 85498382 C T MCOLN3 Silent p.L243L 0.12 TCGA-DK-A2I4-01 1 86048268 86048268 G A CYR61 Silent p.E268E 0.10 TCGA-DK-A2I4-01 1 89885758 89885758 C T GBP1P1 RNA 0.08 TCGA-DK-A2I4-01 1 94568588 94568588 G C ABCA4 Missense_Mutation p.Q185E 0.12 tolerated(0.14) benign(0.245) TCGA-DK-A2I4-01 1 97278438 97278438 C G PTBP2 Missense_Mutation p.Q448E 0.07 deleterious(0.01) benign(0.085) TCGA-DK-A2I4-01 1 97278881 97278881 C G PTBP2 Missense_Mutation p.Q506E 0.12 tolerated(0.5) probably_damaging(0.965) TCGA-DK-A2I4-01 1 97839142 97839142 C T DPYD Missense_Mutation p.R678K 0.09 tolerated(0.26) benign(0.009) TCGA-DK-A2I4-01 20 13830926 13830926 G T SEL1L2 Missense_Mutation p.Q507K 0.11 deleterious_low_confidence(0.04) benign(0.057) TCGA-DK-A2I4-01 20 1584718 1584718 C G SIRPB1 Intron 0.10 TCGA-DK-A2I4-01 20 16359787 16359787 C T KIF16B Missense_Mutation p.E954K 0.08 tolerated_low_confidence(0.07) benign(0.247) TCGA-DK-A2I4-01 20 16359856 16359856 G A KIF16B Missense_Mutation p.L931F 0.06 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-DK-A2I4-01 20 18167964 18167964 C T CSRP2BP Missense_Mutation p.S737L 0.09 deleterious(0) benign(0.151) TCGA-DK-A2I4-01 20 20621418 20621418 G A RALGAPA2 Silent p.F159F 0.10 TCGA-DK-A2I4-01 20 21309207 21309207 C G XRN2 Missense_Mutation p.A109G 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 20 25388508 25388508 G A GINS1 Missense_Mutation p.E18K 0.15 tolerated(0.12) benign(0.02) TCGA-DK-A2I4-01 20 30585240 30585240 G A XKR7 Missense_Mutation p.E574K 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 20 30681792 30681792 G A HCK Missense_Mutation p.E407K 0.07 tolerated(0.14) possibly_damaging(0.716) TCGA-DK-A2I4-01 20 306825 306825 A T SOX12 Missense_Mutation p.K86M 0.10 deleterious(0) possibly_damaging(0.864) TCGA-DK-A2I4-01 20 3090835 3090835 C T UBOX5 Missense_Mutation p.E515K 0.07 tolerated(0.17) benign(0.1) TCGA-DK-A2I4-01 20 31021257 31021257 G A ASXL1 Missense_Mutation p.R419K 0.08 deleterious(0.03) benign(0.015) TCGA-DK-A2I4-01 20 31661410 31661410 G A BPIFB3 Silent p.%3D 0.07 TCGA-DK-A2I4-01 20 32354821 32354821 C T ZNF341 Missense_Mutation p.H456Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 20 33722577 33722577 C G EDEM2 Missense_Mutation p.L222F 0.07 deleterious(0) probably_damaging(0.952) TCGA-DK-A2I4-01 20 33875386 33875386 G C FAM83C Nonsense_Mutation p.S399* 0.07 TCGA-DK-A2I4-01 20 34203963 34203963 C G SPAG4 Missense_Mutation p.S13W 0.09 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I4-01 20 34220496 34220496 C A CPNE1 Missense_Mutation p.K89N 0.13 tolerated(0.14) probably_damaging(0.93) TCGA-DK-A2I4-01 20 34459608 34459608 C T PHF20 Missense_Mutation p.S380L 0.13 tolerated(0.76) benign(0.002) TCGA-DK-A2I4-01 20 34583040 34583040 G A CNBD2 Silent p.L312L 0.10 TCGA-DK-A2I4-01 20 36147233 36147233 G C BLCAP 3'UTR 0.09 TCGA-DK-A2I4-01 20 36662405 36662405 C G RPRD1B Missense_Mutation p.S19C 0.13 deleterious(0) probably_damaging(0.911) TCGA-DK-A2I4-01 20 37353686 37353686 G A SLC32A1 Missense_Mutation p.E107K 0.09 deleterious(0.04) benign(0.007) TCGA-DK-A2I4-01 20 3766965 3766965 C G CENPB Missense_Mutation p.E56Q 0.09 tolerated(0.47) unknown(0) TCGA-DK-A2I4-01 20 40079711 40079711 C T CHD6 Silent p.G1186G 0.10 TCGA-DK-A2I4-01 20 43113071 43113071 G A TTPAL Silent p.V180V 0.06 TCGA-DK-A2I4-01 20 43132467 43132467 G A SERINC3 Silent p.L348L 0.07 TCGA-DK-A2I4-01 20 43610474 43610474 C T STK4 Missense_Mutation p.H84Y 0.13 tolerated(1) benign(0.001) TCGA-DK-A2I4-01 20 43933126 43933126 C T MATN4 Missense_Mutation p.E129K 0.18 possibly_damaging(0.616) TCGA-DK-A2I4-01 20 43994227 43994227 C G SYS1 Intron 0.12 TCGA-DK-A2I4-01 20 44053141 44053141 C G PIGT Missense_Mutation p.S469C 0.14 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 20 44313462 44313462 C G WFDC10B 3'UTR 0.08 TCGA-DK-A2I4-01 20 44598087 44598087 C T ZNF335 Intron 0.12 TCGA-DK-A2I4-01 20 44671954 44671954 C T SLC12A5 Missense_Mutation p.S433L 0.10 deleterious(0.01) possibly_damaging(0.521) TCGA-DK-A2I4-01 20 44682304 44682304 C G SLC12A5 Missense_Mutation p.L902V 0.08 deleterious(0.03) possibly_damaging(0.786) TCGA-DK-A2I4-01 20 45012097 45012097 C T ELMO2 Silent p.L238L 0.09 TCGA-DK-A2I4-01 20 47641868 47641868 G C ARFGEF2 Missense_Mutation p.D1592H 0.11 deleterious(0.02) benign(0.017) TCGA-DK-A2I4-01 20 48562721 48562721 G A RNF114 Silent p.K149K 0.09 TCGA-DK-A2I4-01 20 50051746 50051746 G A NFATC2 Nonsense_Mutation p.Q671* 0.10 TCGA-DK-A2I4-01 20 51873094 51873094 G C TSHZ2 Missense_Mutation p.E1033Q 0.07 deleterious(0) probably_damaging(0.92) TCGA-DK-A2I4-01 20 55033555 55033555 C T CASS4 Nonsense_Mutation p.Q705* 0.11 TCGA-DK-A2I4-01 20 55949817 55949817 G A RAE1 Missense_Mutation p.G327E 0.04 deleterious(0) probably_damaging(0.987) TCGA-DK-A2I4-01 20 57429312 57429312 C T GNAS Missense_Mutation p.A331V 0.12 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I4-01 20 5939338 5939338 C G MCM8 Missense_Mutation p.P252R 0.12 tolerated(0.63) benign(0.002) TCGA-DK-A2I4-01 20 60448856 60448856 G A CDH4 Missense_Mutation p.R317Q 0.10 deleterious(0.04) benign(0.09) TCGA-DK-A2I4-01 20 60768599 60768599 C T MTG2 Silent p.P41P 0.12 TCGA-DK-A2I4-01 20 61300307 61300307 C T SLCO4A1 Silent p.F634F 0.10 TCGA-DK-A2I4-01 20 61303163 61303163 C T SLCO4A1 Missense_Mutation p.S696L 0.11 tolerated(0.22) benign(0.014) TCGA-DK-A2I4-01 20 61512150 61512150 C T DIDO1 Missense_Mutation p.E1720K 0.08 benign(0.242) TCGA-DK-A2I4-01 20 62324221 62324221 G C RTEL1 Missense_Mutation p.E930Q 0.08 deleterious(0.01) benign(0.225) TCGA-DK-A2I4-01 20 62421337 62421337 C T ZBTB46 Silent p.Q258Q 0.11 TCGA-DK-A2I4-01 20 62680557 62680557 G C SOX18 Missense_Mutation p.Q105E 0.08 tolerated(0.06) benign(0.008) TCGA-DK-A2I4-01 20 62891502 62891502 C G PCMTD2 Missense_Mutation p.H62D 0.09 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 20 7962990 7962990 C A TMX4 Missense_Mutation p.G320C 0.13 deleterious(0.02) benign(0.315) TCGA-DK-A2I4-01 20 853663 853663 G T ANGPT4 Missense_Mutation p.F484L 0.08 deleterious(0) probably_damaging(0.963) TCGA-DK-A2I4-01 21 30257552 30257552 G A N6AMT1 Missense_Mutation p.A39V 0.10 benign(0.095) TCGA-DK-A2I4-01 21 33057990 33057990 G C SCAF4 Missense_Mutation p.F700L 0.12 unknown(0) TCGA-DK-A2I4-01 21 34655402 34655402 C G IL10RB Missense_Mutation p.Q168E 0.10 tolerated(1) benign(0.002) TCGA-DK-A2I4-01 21 37617864 37617864 G A DOPEY2 Missense_Mutation p.E1196K 0.27 deleterious(0) possibly_damaging(0.591) TCGA-DK-A2I4-01 21 38126565 38126565 G A HLCS Silent p.I721I 0.11 TCGA-DK-A2I4-01 21 38309074 38309074 G C HLCS Missense_Mutation p.S224C 0.27 deleterious(0) possibly_damaging(0.625) TCGA-DK-A2I4-01 21 38461129 38461129 G A TTC3 Silent p.K123K 0.16 TCGA-DK-A2I4-01 21 41457556 41457556 C T DSCAM Missense_Mutation p.E1369K 0.18 tolerated(0.46) benign(0.02) TCGA-DK-A2I4-01 21 43557560 43557560 C A UMODL1 Missense_Mutation p.H1391N 0.10 tolerated(0.46) benign(0.001) TCGA-DK-A2I4-01 21 43704787 43704787 C T ABCG1 Silent p.F284F 0.16 TCGA-DK-A2I4-01 21 44329053 44329053 C G NDUFV3 Silent p.T448T 0.07 TCGA-DK-A2I4-01 21 45096216 45096216 G T RRP1B Missense_Mutation p.D205Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 21 45096684 45096684 G A RRP1B Missense_Mutation p.E229K 0.08 deleterious(0.02) possibly_damaging(0.798) TCGA-DK-A2I4-01 21 45096750 45096750 G C RRP1B Missense_Mutation p.E251Q 0.06 tolerated(0.15) possibly_damaging(0.649) TCGA-DK-A2I4-01 21 46321536 46321536 G A ITGB2 Silent p.F204F 0.09 TCGA-DK-A2I4-01 21 46898256 46898256 G A COL18A1 Missense_Mutation p.D593N 0.05 unknown(0) TCGA-DK-A2I4-01 22 18209803 18209803 G A BCL2L13 Missense_Mutation p.E321K 0.12 deleterious(0.01) benign(0.339) TCGA-DK-A2I4-01 22 18324667 18324667 C T MICAL3 Missense_Mutation p.E908K 0.15 probably_damaging(0.998) TCGA-DK-A2I4-01 22 18979420 18979420 C T DGCR5 RNA 0.22 TCGA-DK-A2I4-01 22 20100056 20100056 C T TRMT2A 3'UTR 0.23 TCGA-DK-A2I4-01 22 20102529 20102529 G A TRMT2A Missense_Mutation p.R322C 0.11 deleterious(0) possibly_damaging(0.453) TCGA-DK-A2I4-01 22 21272303 21272303 G A CRKL Silent p.R27R 0.20 TCGA-DK-A2I4-01 22 22330076 22330076 C T TOP3B Silent p.K2K 0.09 TCGA-DK-A2I4-01 22 22516835 22516835 C T IGLV4-60 Silent p.L41L 0.09 TCGA-DK-A2I4-01 22 23101576 23101576 C T IGLV2-14 Missense_Mutation p.S77L 0.10 deleterious_low_confidence(0) possibly_damaging(0.865) TCGA-DK-A2I4-01 22 23154663 23154663 G A IGLV3-10 Missense_Mutation p.E78K 0.16 deleterious(0.02) possibly_damaging(0.791) TCGA-DK-A2I4-01 22 23482428 23482428 G C RTDR1 Missense_Mutation p.I60M 0.10 deleterious(0) possibly_damaging(0.878) TCGA-DK-A2I4-01 22 24579478 24579478 C G SUSD2 Missense_Mutation p.I101M 0.10 deleterious(0.04) benign(0.265) TCGA-DK-A2I4-01 22 24581693 24581693 G A SUSD2 Missense_Mutation p.D379N 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 22 26890062 26890062 G A SRRD 3'UTR 0.20 TCGA-DK-A2I4-01 22 26932283 26932283 C T TPST2 Missense_Mutation p.D338N 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-DK-A2I4-01 22 29706489 29706489 G A GAS2L1 Missense_Mutation p.E232K 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 22 29706991 29706991 G A GAS2L1 Silent p.%3D 0.17 TCGA-DK-A2I4-01 22 29707006 29707006 G T GAS2L1 3'UTR 0.12 TCGA-DK-A2I4-01 22 29737585 29737585 G A AP1B1 Silent p.I567I 0.14 TCGA-DK-A2I4-01 22 30730592 30730592 C T SF3A1 Silent p.R791R 0.11 TCGA-DK-A2I4-01 22 31019015 31019015 C T TCN2 Silent p.A389A 0.09 TCGA-DK-A2I4-01 22 34046608 34046608 G A LARGE Silent p.S51S 0.10 TCGA-DK-A2I4-01 22 36587672 36587672 C T APOL4 Silent p.L168L 0.23 TCGA-DK-A2I4-01 22 36623580 36623580 G C APOL2 Nonsense_Mutation p.S295* 0.15 TCGA-DK-A2I4-01 22 36623761 36623761 G A APOL2 Nonsense_Mutation p.Q235* 0.12 TCGA-DK-A2I4-01 22 36624083 36624083 A T APOL2 Silent p.S127S 0.19 TCGA-DK-A2I4-01 22 36624084 36624084 G A APOL2 Missense_Mutation p.S127F 0.19 deleterious(0) probably_damaging(0.93) TCGA-DK-A2I4-01 22 36661542 36661542 G C APOL1 Missense_Mutation p.L236F 0.13 deleterious(0) possibly_damaging(0.483) TCGA-DK-A2I4-01 22 36698620 36698620 G A MYH9 Silent p.F831F 0.15 TCGA-DK-A2I4-01 22 37098663 37098663 G A CACNG2 5'UTR 0.22 TCGA-DK-A2I4-01 22 37696979 37696979 G A CYTH4 Missense_Mutation p.E156K 0.10 deleterious(0) possibly_damaging(0.86) TCGA-DK-A2I4-01 22 39387537 39387537 C T APOBEC3B Silent p.F308F 0.16 TCGA-DK-A2I4-01 22 39388036 39388036 C T APOBEC3B Intron 0.16 TCGA-DK-A2I4-01 22 39388549 39388549 C G APOBEC3B 3'UTR 0.25 TCGA-DK-A2I4-01 22 40800460 40800460 G A SGSM3 Splice_Site p.X122_splice 0.09 TCGA-DK-A2I4-01 22 41560132 41560133 - G EP300 Frame_Shift_Ins 0.08 TCGA-DK-A2I4-01 22 41562613 41562613 G A EP300 Missense_Mutation p.D1273N 0.11 benign(0.053) TCGA-DK-A2I4-01 22 42606365 42606365 G A TCF20 Silent p.I1649I 0.18 TCGA-DK-A2I4-01 22 46930976 46930976 C T CELSR1 Missense_Mutation p.E698K 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 22 50297467 50297467 G A ALG12 3'UTR 0.10 TCGA-DK-A2I4-01 22 50893737 50893737 G C SBF1 Missense_Mutation p.F1490L 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A2I4-01 22 50921131 50921131 C T ADM2 Silent p.L82L 0.12 TCGA-DK-A2I4-01 22 51017894 51017894 G T CHKB Silent p.I358I 0.12 TCGA-DK-A2I4-01 2 10045054 10045054 C T TAF1B Missense_Mutation p.R292C 0.10 tolerated(0.1) possibly_damaging(0.64) TCGA-DK-A2I4-01 2 101554280 101554280 C T NPAS2 Silent p.I113I 0.15 TCGA-DK-A2I4-01 2 111419343 111419343 G C BUB1 Missense_Mutation p.Q345E 0.07 tolerated(0.13) benign(0.001) TCGA-DK-A2I4-01 2 112576491 112576491 C A ANAPC1 Missense_Mutation p.R1084L 0.09 deleterious(0) probably_damaging(0.967) TCGA-DK-A2I4-01 2 113417184 113417184 C G SLC20A1 Silent p.V484V 0.17 TCGA-DK-A2I4-01 2 113593149 113593149 C T IL1B Silent p.Q31Q 0.08 TCGA-DK-A2I4-01 2 116447417 116447417 G T DPP10 Nonsense_Mutation p.E170* 0.14 TCGA-DK-A2I4-01 2 11740923 11740923 C T GREB1 Intron 0.11 TCGA-DK-A2I4-01 2 119600619 119600619 G A EN1 Silent p.I358I 0.13 TCGA-DK-A2I4-01 2 119604494 119604494 G C EN1 Missense_Mutation p.Q84E 0.15 tolerated_low_confidence(0.19) unknown(0) TCGA-DK-A2I4-01 2 120125785 120125785 G A DBI Missense_Mutation p.E72K 0.12 tolerated(0.17) benign(0.348) TCGA-DK-A2I4-01 2 120684226 120684226 G A PTPN4 Missense_Mutation p.D352N 0.15 tolerated(0.51) benign(0.008) TCGA-DK-A2I4-01 2 128615653 128615653 G A POLR2D Missense_Mutation p.P8S 0.10 tolerated(0.7) benign(0) TCGA-DK-A2I4-01 2 131520311 131520311 C G AMER3 Silent p.L222L 0.12 TCGA-DK-A2I4-01 2 141093288 141093288 C T LRP1B Silent p.L4004L 0.20 TCGA-DK-A2I4-01 2 149270460 149270460 G A MBD5 Missense_Mutation p.D1479N 0.05 deleterious(0) unknown(0) TCGA-DK-A2I4-01 2 152362007 152362007 C G NEB Missense_Mutation p.Q7909H 0.14 probably_damaging(0.999) TCGA-DK-A2I4-01 2 153003708 153003708 C T STAM2 Missense_Mutation p.E139K 0.06 deleterious(0.03) probably_damaging(0.991) TCGA-DK-A2I4-01 2 160289391 160289391 C T BAZ2B Missense_Mutation p.G593R 0.14 probably_damaging(0.953) TCGA-DK-A2I4-01 2 160667045 160667045 G C LY75-CD302 Nonsense_Mutation p.S1564* 0.11 TCGA-DK-A2I4-01 2 160832638 160832638 C T PLA2R1 Missense_Mutation p.D846N 0.09 tolerated(0.48) benign(0.03) TCGA-DK-A2I4-01 2 16085691 16085691 C T MYCN Silent p.S289S 0.12 TCGA-DK-A2I4-01 2 160869838 160869838 G A PLA2R1 Nonsense_Mutation p.R534* 0.14 TCGA-DK-A2I4-01 2 160889477 160889477 G C PLA2R1 Missense_Mutation p.F278L 0.14 deleterious(0.01) possibly_damaging(0.877) TCGA-DK-A2I4-01 2 161141534 161141534 C T RBMS1 Missense_Mutation p.D260N 0.13 deleterious(0) probably_damaging(0.96) TCGA-DK-A2I4-01 2 164466154 164466154 C T FIGN Missense_Mutation p.E730K 0.10 deleterious(0.01) possibly_damaging(0.849) TCGA-DK-A2I4-01 2 166797590 166797590 C T TTC21B Missense_Mutation p.M219I 0.14 deleterious(0.01) probably_damaging(0.949) TCGA-DK-A2I4-01 2 169780115 169780115 G C ABCB11 3'UTR 0.12 TCGA-DK-A2I4-01 2 176958257 176958257 C T HOXD13 Silent p.F213F 0.07 TCGA-DK-A2I4-01 2 177016457 177016457 G A HOXD4 Silent p.Q32Q 0.10 TCGA-DK-A2I4-01 2 178482268 178482268 C G TTC30A Missense_Mutation p.E388Q 0.12 deleterious(0.03) possibly_damaging(0.821) TCGA-DK-A2I4-01 2 178482343 178482343 C G TTC30A Missense_Mutation p.D363H 0.13 deleterious(0) probably_damaging(0.928) TCGA-DK-A2I4-01 2 179489391 179489391 C T TTN Silent p.L14872L 0.18 TCGA-DK-A2I4-01 2 179594559 179594559 G C TTN Missense_Mutation p.L6141V 0.11 TCGA-DK-A2I4-01 2 183291366 183291366 G A PDE1A Intron 0.21 TCGA-DK-A2I4-01 2 18745124 18745124 C T NT5C1B Missense_Mutation p.E591K 0.12 tolerated(0.13) benign(0.256) TCGA-DK-A2I4-01 2 190728745 190728745 G T PMS1 Missense_Mutation p.K711N 0.12 tolerated(0.12) benign(0) TCGA-DK-A2I4-01 2 197664281 197664281 C G GTF3C3 Missense_Mutation p.E19Q 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A2I4-01 2 198263234 198263234 C T SF3B1 Missense_Mutation p.E1029K 0.16 deleterious(0.04) possibly_damaging(0.893) TCGA-DK-A2I4-01 2 198318272 198318272 C T COQ10B 5'UTR 0.16 TCGA-DK-A2I4-01 2 202900897 202900897 G C FZD7 Missense_Mutation p.K509N 0.14 tolerated(0.07) benign(0.038) TCGA-DK-A2I4-01 2 204078320 204078320 C G NBEAL1 Missense_Mutation p.L2643V 0.22 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 2 206870253 206870253 C G INO80D Missense_Mutation p.K641N 0.15 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 2 216190858 216190858 G A ATIC Silent p.L176L 0.14 TCGA-DK-A2I4-01 2 217300156 217300156 C T SMARCAL1 Silent p.V527V 0.09 TCGA-DK-A2I4-01 2 219128245 219128245 C T GPBAR1 Silent p.L266L 0.08 TCGA-DK-A2I4-01 2 219134293 219134293 G C AAMP Intron 0.09 TCGA-DK-A2I4-01 2 219896248 219896248 C T CCDC108 Missense_Mutation p.D260N 0.11 tolerated(0.32) possibly_damaging(0.615) TCGA-DK-A2I4-01 2 220159694 220159694 C T PTPRN Intron 0.24 TCGA-DK-A2I4-01 2 220238974 220238974 C G DNPEP 3'UTR 0.12 TCGA-DK-A2I4-01 2 233243989 233243989 G A ALPP Silent p.L91L 0.11 TCGA-DK-A2I4-01 2 233599920 233599920 A G GIGYF2 Missense_Mutation p.T5A 0.12 possibly_damaging(0.558) TCGA-DK-A2I4-01 2 233744159 233744159 C T NGEF 3'UTR 0.16 TCGA-DK-A2I4-01 2 238402155 238402155 G A MLPH Missense_Mutation p.R29Q 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 2 241398601 241398601 C T GPC1 Silent p.F107F 0.20 TCGA-DK-A2I4-01 2 242743447 242743447 C T GAL3ST2 Missense_Mutation p.R355W 0.32 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 2 26700125 26700125 C T OTOF Missense_Mutation p.R813Q 0.11 tolerated(0.29) benign(0.045) TCGA-DK-A2I4-01 2 27308605 27308605 C T EMILIN1 Missense_Mutation p.R925W 0.10 probably_damaging(0.998) TCGA-DK-A2I4-01 2 27550106 27550106 G T GTF3C2 Missense_Mutation p.Q819K 0.07 tolerated(0.36) possibly_damaging(0.53) TCGA-DK-A2I4-01 2 27666827 27666827 G A KRTCAP3 Missense_Mutation p.M209I 0.11 tolerated(0.2) benign(0.005) TCGA-DK-A2I4-01 2 27804926 27804927 - TC C2orf16 Frame_Shift_Ins p.H1831Lfs*62 0.14 TCGA-DK-A2I4-01 2 31562480 31562480 C T XDH Missense_Mutation p.E1217K 0.09 tolerated(0.15) benign(0.067) TCGA-DK-A2I4-01 2 31598300 31598300 G A XDH Silent p.F516F 0.10 TCGA-DK-A2I4-01 2 32640519 32640519 G A BIRC6 Silent p.L720L 0.25 TCGA-DK-A2I4-01 2 33824319 33824319 C T FAM98A 5'UTR 0.08 TCGA-DK-A2I4-01 2 3502664 3502664 G A ADI1 3'UTR 0.11 TCGA-DK-A2I4-01 2 36669853 36669853 G T CRIM1 Missense_Mutation p.D282Y 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A2I4-01 2 37280645 37280645 C G HEATR5B Missense_Mutation p.K835N 0.12 deleterious(0) benign(0.275) TCGA-DK-A2I4-01 2 38893390 38893390 G C GALM Missense_Mutation p.L29F 0.10 tolerated(0.05) possibly_damaging(0.835) TCGA-DK-A2I4-01 2 43452198 43452198 C G ZFP36L2 Missense_Mutation p.E249Q 0.07 tolerated(0.06) possibly_damaging(0.727) TCGA-DK-A2I4-01 2 44102359 44102359 G A ABCG8 Silent p.L521L 0.08 TCGA-DK-A2I4-01 2 54843421 54843421 G A SPTBN1 Silent p.Q184Q 0.16 TCGA-DK-A2I4-01 2 61148963 61148963 G A REL Missense_Mutation p.E385K 0.09 tolerated(0.26) possibly_damaging(0.546) TCGA-DK-A2I4-01 2 61721193 61721193 C T XPO1 Missense_Mutation p.E361K 0.09 deleterious(0.02) benign(0.388) TCGA-DK-A2I4-01 2 62450306 62450306 G C B3GNT2 Silent p.L317L 0.18 TCGA-DK-A2I4-01 2 63283012 63283012 C T OTX1 Missense_Mutation p.S209F 0.14 tolerated(0.12) unknown(0) TCGA-DK-A2I4-01 2 65296855 65296855 G A CEP68 Missense_Mutation p.E93K 0.10 tolerated(0.24) benign(0.108) TCGA-DK-A2I4-01 2 69659040 69659040 G A NFU1 Missense_Mutation p.H54Y 0.09 tolerated(1) benign(0) TCGA-DK-A2I4-01 2 70485407 70485407 C T PCYOX1 Silent p.I37I 0.18 TCGA-DK-A2I4-01 2 71302769 71302769 G A NAGK Missense_Mutation p.E268K 0.14 tolerated(0.29) benign(0.035) TCGA-DK-A2I4-01 2 73799556 73799556 C T ALMS1 Missense_Mutation p.H3517Y 0.21 probably_damaging(0.979) TCGA-DK-A2I4-01 2 74399752 74399752 G A MOB1A Missense_Mutation p.P48S 0.06 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 2 74650498 74650498 G C WDR54 Missense_Mutation p.G113A 0.09 tolerated(0.86) benign(0.001) TCGA-DK-A2I4-01 2 85617504 85617504 C T ELMOD3 Silent p.L353L 0.12 TCGA-DK-A2I4-01 2 86255054 86255054 C T POLR1A Missense_Mutation p.M1672I 0.09 tolerated(0.07) probably_damaging(0.997) TCGA-DK-A2I4-01 2 87141008 87141008 C T RGPD1 5'Flank 0.19 TCGA-DK-A2I4-01 2 96780656 96780656 G A ADRA2B Silent p.I411I 0.09 TCGA-DK-A2I4-01 2 96932160 96932160 G A CIAO1 Nonsense_Mutation p.W24* 0.19 TCGA-DK-A2I4-01 3 101520284 101520284 G A NXPE3 Missense_Mutation p.S100N 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A2I4-01 3 111603754 111603754 C G PHLDB2 Missense_Mutation p.S277C 0.27 deleterious(0) possibly_damaging(0.687) TCGA-DK-A2I4-01 3 113128161 113128161 C T WDR52 Missense_Mutation p.E228K 0.14 deleterious(0.04) benign(0.04) TCGA-DK-A2I4-01 3 11404346 11404346 G A ATG7 Silent p.V581V 0.09 TCGA-DK-A2I4-01 3 115560818 115560818 C G LSAMP Missense_Mutation p.E265Q 0.11 tolerated(0.19) possibly_damaging(0.664) TCGA-DK-A2I4-01 3 119905560 119905560 G A GPR156 Missense_Mutation p.T182M 0.12 deleterious(0.02) possibly_damaging(0.672) TCGA-DK-A2I4-01 3 120128498 120128498 G A FSTL1 Nonsense_Mutation p.Q115* 0.21 TCGA-DK-A2I4-01 3 121264743 121264743 G A POLQ 5'UTR 0.09 TCGA-DK-A2I4-01 3 122459618 122459618 C T HSPBAP1 Silent p.L347L 0.11 TCGA-DK-A2I4-01 3 122667551 122667551 G A SEMA5B Missense_Mutation p.L98F 0.09 deleterious_low_confidence(0.04) benign(0.01) TCGA-DK-A2I4-01 3 123014973 123014973 C T ADCY5 Silent p.Q1007Q 0.13 TCGA-DK-A2I4-01 3 124181431 124181431 G C KALRN Missense_Mutation p.E1326Q 0.12 tolerated(0.1) benign(0.341) TCGA-DK-A2I4-01 3 124211637 124211637 G A KALRN Silent p.V1578V 0.07 TCGA-DK-A2I4-01 3 124456651 124456651 C T UMPS Missense_Mutation p.L183F 0.17 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 3 124456779 124456779 C G UMPS Silent p.L225L 0.10 TCGA-DK-A2I4-01 3 124456864 124456864 C T UMPS Silent p.L254L 0.11 TCGA-DK-A2I4-01 3 126135240 126135240 C T CCDC37 Missense_Mutation p.R103W 0.09 deleterious(0.03) benign(0.051) TCGA-DK-A2I4-01 3 126193835 126193835 C G ZXDC Missense_Mutation p.E292Q 0.13 tolerated(0.07) probably_damaging(1) TCGA-DK-A2I4-01 3 128991687 128991687 C G COPG1 Silent p.V732V 0.13 TCGA-DK-A2I4-01 3 132215491 132215491 C T DNAJC13 Silent p.F1380F 0.14 TCGA-DK-A2I4-01 3 13401905 13401905 G A NUP210 Silent p.L673L 0.47 TCGA-DK-A2I4-01 3 134873013 134873013 C G EPHB1 Missense_Mutation p.I439M 0.11 tolerated(0.25) benign(0.14) TCGA-DK-A2I4-01 3 136574265 136574265 C G SLC35G2 Silent p.L321L 0.09 TCGA-DK-A2I4-01 3 137790534 137790534 C T DZIP1L Silent p.E522E 0.10 TCGA-DK-A2I4-01 3 14509714 14509714 G A SLC6A6 Missense_Mutation p.E364K 0.13 deleterious(0.03) possibly_damaging(0.7) TCGA-DK-A2I4-01 3 148773120 148773120 G C HLTF Missense_Mutation p.I481M 0.13 deleterious(0.02) benign(0.303) TCGA-DK-A2I4-01 3 149095419 149095419 G C TM4SF1 5'UTR 0.11 TCGA-DK-A2I4-01 3 150659542 150659542 G A CLRN1 Missense_Mutation p.P87L 0.11 deleterious(0) benign(0.159) TCGA-DK-A2I4-01 3 150903167 150903167 G T MED12L Silent p.V515V 0.10 TCGA-DK-A2I4-01 3 151155890 151155890 G A IGSF10 Silent p.I2153I 0.16 TCGA-DK-A2I4-01 3 151166756 151166756 G C IGSF10 Nonsense_Mutation p.S338* 0.12 TCGA-DK-A2I4-01 3 15512080 15512080 C T COLQ Missense_Mutation p.R227Q 0.23 tolerated(0.13) unknown(0) TCGA-DK-A2I4-01 3 16306335 16306335 C T DPH3 Missense_Mutation p.E17K 0.05 tolerated(0.08) benign(0.04) TCGA-DK-A2I4-01 3 183029433 183029433 C T MCF2L2 Intron 0.09 TCGA-DK-A2I4-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.15 deleterious_low_confidence(0.02) benign(0.001) TCGA-DK-A2I4-01 3 188327106 188327106 T C LPP Missense_Mutation p.I196T 0.16 tolerated(0.54) benign(0.06) TCGA-DK-A2I4-01 3 191100573 191100573 G A CCDC50 Silent p.E427E 0.12 TCGA-DK-A2I4-01 3 191178959 191178959 C T PYDC2 Missense_Mutation p.S3F 0.13 deleterious(0.03) probably_damaging(0.931) TCGA-DK-A2I4-01 3 193130105 193130105 G A ATP13A4 Missense_Mutation p.P1024S 0.11 tolerated(0.41) benign(0.004) TCGA-DK-A2I4-01 3 193855682 193855682 C T HES1 Missense_Mutation p.P168L 0.09 tolerated(0.78) benign(0.034) TCGA-DK-A2I4-01 3 194146180 194146180 T C ATP13A3 Missense_Mutation p.I1068M 0.14 deleterious(0) benign(0.313) TCGA-DK-A2I4-01 3 195053852 195053852 T A ACAP2 Missense_Mutation p.M192L 0.17 tolerated(0.14) benign(0.002) TCGA-DK-A2I4-01 3 196751171 196751171 C T MFI2 Intron 0.12 TCGA-DK-A2I4-01 3 25805781 25805781 G A NGLY1 Missense_Mutation p.P90S 0.09 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I4-01 3 27333022 27333022 C T NEK10 Missense_Mutation p.D477N 0.16 deleterious(0.01) benign(0.422) TCGA-DK-A2I4-01 3 33414612 33414612 G A FBXL2 Missense_Mutation p.E107K 0.31 deleterious(0.05) possibly_damaging(0.793) TCGA-DK-A2I4-01 3 33558526 33558526 C T CLASP2 Missense_Mutation p.E1318K 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-DK-A2I4-01 3 46622749 46622749 G A TDGF1 3'UTR 0.10 TCGA-DK-A2I4-01 3 47619161 47619161 C T CSPG5 Missense_Mutation p.D119N 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A2I4-01 3 47891354 47891354 C T DHX30 Intron 0.08 TCGA-DK-A2I4-01 3 48726994 48726994 C T IP6K2 Missense_Mutation p.G253S 0.17 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 3 49039971 49039971 G A P4HTM Missense_Mutation p.M222I 0.22 tolerated(0.06) possibly_damaging(0.59) TCGA-DK-A2I4-01 3 50214234 50214234 G A SEMA3F Missense_Mutation p.E195K 0.07 deleterious(0) probably_damaging(0.95) TCGA-DK-A2I4-01 3 50331093 50331093 G C HYAL3 Silent p.L318L 0.24 TCGA-DK-A2I4-01 3 52256256 52256256 C T TLR9 Silent p.L846L 0.12 TCGA-DK-A2I4-01 3 52489678 52489678 C A NISCH Missense_Mutation p.F7L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-DK-A2I4-01 3 52557550 52557550 C T STAB1 Silent p.I2416I 0.22 TCGA-DK-A2I4-01 3 53844150 53844150 C G CACNA1D Nonsense_Mutation p.S2026* 0.06 TCGA-DK-A2I4-01 3 56657229 56657229 G C FAM208A 3'UTR 0.10 TCGA-DK-A2I4-01 3 85961684 85961684 G C CADM2 Missense_Mutation p.E224Q 0.10 tolerated(0.43) benign(0.395) TCGA-DK-A2I4-01 3 98073347 98073347 C G OR5K4 Missense_Mutation p.S217C 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 4 100200605 100200605 C G ADH1A Missense_Mutation p.D361H 0.35 tolerated(0.09) possibly_damaging(0.884) TCGA-DK-A2I4-01 4 100512501 100512501 C T MTTP Missense_Mutation p.P204L 0.11 tolerated(0.65) benign(0.005) TCGA-DK-A2I4-01 4 102981531 102981531 G C BANK1 Silent p.L711L 0.13 TCGA-DK-A2I4-01 4 110757312 110757312 G A RRH Missense_Mutation p.D183N 0.10 tolerated(0.1) benign(0.167) TCGA-DK-A2I4-01 4 111430911 111430911 C G ENPEP Nonsense_Mutation p.S381* 0.09 TCGA-DK-A2I4-01 4 119947939 119947939 G A SYNPO2 Missense_Mutation p.E139K 0.15 tolerated(0.53) benign(0.003) TCGA-DK-A2I4-01 4 120987847 120987847 C T MAD2L1 Missense_Mutation p.G15R 0.11 deleterious(0.01) probably_damaging(0.932) TCGA-DK-A2I4-01 4 128811324 128811324 G C PLK4 Missense_Mutation p.R588T 0.16 tolerated(0.09) possibly_damaging(0.71) TCGA-DK-A2I4-01 4 1343568 1343568 G A UVSSA Missense_Mutation p.G119R 0.14 tolerated(0.43) benign(0.021) TCGA-DK-A2I4-01 4 140646942 140646942 C G MAML3 Silent p.R793R 0.11 TCGA-DK-A2I4-01 4 152682052 152682052 C T PET112 Missense_Mutation p.R28K 0.09 deleterious_low_confidence(0.04) benign(0.05) TCGA-DK-A2I4-01 4 154517430 154517430 C T KIAA0922 Silent p.S672S 0.10 TCGA-DK-A2I4-01 4 169602528 169602528 C G PALLD Nonsense_Mutation p.S378* 0.11 TCGA-DK-A2I4-01 4 173269825 173269825 G A GALNTL6 Missense_Mutation p.D180N 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A2I4-01 4 186274687 186274687 G A SNX25 Missense_Mutation p.D675N 0.12 deleterious(0.04) benign(0.046) TCGA-DK-A2I4-01 4 186295477 186295477 C T LRP2BP Missense_Mutation p.E157K 0.07 deleterious(0) probably_damaging(0.993) TCGA-DK-A2I4-01 4 1940246 1940246 C G WHSC1 Silent p.L581L 0.11 TCGA-DK-A2I4-01 4 20529911 20529911 G A SLIT2 Intron 0.07 TCGA-DK-A2I4-01 4 20529930 20529930 G C SLIT2 Intron 0.09 TCGA-DK-A2I4-01 4 25395483 25395483 G C ANAPC4 Missense_Mutation p.Q282H 0.09 deleterious(0) probably_damaging(0.995) TCGA-DK-A2I4-01 4 26432520 26432520 C T RBPJ Missense_Mutation p.S465L 0.11 deleterious_low_confidence(0.04) benign(0.014) TCGA-DK-A2I4-01 4 2673965 2673965 G C FAM193A Missense_Mutation p.E442Q 0.10 tolerated(0.07) probably_damaging(0.986) TCGA-DK-A2I4-01 4 3516565 3516565 C G LRPAP1 Missense_Mutation p.E309Q 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-DK-A2I4-01 4 38910248 38910248 G A FAM114A1 Silent p.L231L 0.09 TCGA-DK-A2I4-01 4 39116803 39116803 G A KLHL5 Nonsense_Mutation p.W688* 0.08 TCGA-DK-A2I4-01 4 39448748 39448748 C G KLB Missense_Mutation p.S801W 0.18 tolerated(0.18) probably_damaging(0.998) TCGA-DK-A2I4-01 4 40245012 40245012 G C RHOH Silent p.L2L 0.15 TCGA-DK-A2I4-01 4 499636 499636 G A PIGG Missense_Mutation p.E164K 0.11 deleterious(0) possibly_damaging(0.811) TCGA-DK-A2I4-01 4 52740512 52740512 C T DCUN1D4 Missense_Mutation p.S71F 0.12 deleterious(0.02) benign(0.104) TCGA-DK-A2I4-01 4 55968637 55968637 G A KDR Nonsense_Mutation p.Q676* 0.19 TCGA-DK-A2I4-01 4 57179512 57179512 G A KIAA1211 Silent p.Q168Q 0.11 TCGA-DK-A2I4-01 4 5758066 5758066 G A EVC Missense_Mutation p.E514K 0.19 deleterious(0.02) benign(0.063) TCGA-DK-A2I4-01 4 57677932 57677932 C T SPINK2 Missense_Mutation p.G43E 0.12 deleterious(0.04) possibly_damaging(0.474) TCGA-DK-A2I4-01 4 57829640 57829640 C A NOA1 Missense_Mutation p.K691N 0.18 deleterious(0.03) benign(0.372) TCGA-DK-A2I4-01 4 5827255 5827255 G A CRMP1 Silent p.I645I 0.14 TCGA-DK-A2I4-01 4 7062677 7062677 C T GRPEL1 Missense_Mutation p.G189D 0.14 deleterious(0) possibly_damaging(0.6) TCGA-DK-A2I4-01 4 74019627 74019627 C G ANKRD17 Missense_Mutation p.E402Q 0.10 probably_damaging(0.999) TCGA-DK-A2I4-01 4 76817437 76817437 C T PPEF2 Silent p.Q14Q 0.14 TCGA-DK-A2I4-01 4 76882204 76882204 G A SDAD1 Nonsense_Mutation p.Q445* 0.12 TCGA-DK-A2I4-01 4 82065388 82065388 C T PRKG2 Silent p.A417A 0.17 TCGA-DK-A2I4-01 4 87730928 87730928 G C PTPN13 Missense_Mutation p.E2369Q 0.14 deleterious(0) probably_damaging(0.983) TCGA-DK-A2I4-01 4 88534227 88534227 C G DSPP Missense_Mutation p.Q297E 0.17 possibly_damaging(0.908) TCGA-DK-A2I4-01 4 89334244 89334244 G A HERC6 Missense_Mutation p.E462K 0.16 tolerated(0.57) benign(0.002) TCGA-DK-A2I4-01 4 95201922 95201922 G A SMARCAD1 Silent p.L868L 0.13 TCGA-DK-A2I4-01 5 112174757 112174757 G T APC Nonsense_Mutation p.E1156* 0.22 TCGA-DK-A2I4-01 5 1235675 1235675 C T SLC6A18 Silent p.I173I 0.11 TCGA-DK-A2I4-01 5 125828671 125828671 C T GRAMD3 3'UTR 0.08 TCGA-DK-A2I4-01 5 133747454 133747454 G C CDKN2AIPNL Nonsense_Mutation p.S31* 0.13 TCGA-DK-A2I4-01 5 134022530 134022530 C G SEC24A Missense_Mutation p.H514Q 0.05 tolerated(0.12) benign(0.039) TCGA-DK-A2I4-01 5 134032871 134032871 C G SEC24A Missense_Mutation p.S681C 0.12 deleterious(0.03) possibly_damaging(0.818) TCGA-DK-A2I4-01 5 134678907 134678907 G C C5orf66 Missense_Mutation p.E63D 0.13 deleterious_low_confidence(0) benign(0.398) TCGA-DK-A2I4-01 5 138643642 138643642 G A MATR3 Missense_Mutation p.E180K 0.17 deleterious(0.04) probably_damaging(0.931) TCGA-DK-A2I4-01 5 140432123 140432123 C A PCDHB1 Silent p.L356L 0.12 TCGA-DK-A2I4-01 5 140594403 140594403 C T PCDHB13 Silent p.V236V 0.09 TCGA-DK-A2I4-01 5 140736611 140736611 G A PCDHGA4 Missense_Mutation p.G615E 0.17 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-DK-A2I4-01 5 140750571 140750571 G A PCDHGB3 Missense_Mutation p.E204K 0.17 tolerated(0.42) benign(0.034) TCGA-DK-A2I4-01 5 140753992 140753992 G A PCDHGA6 Silent p.L114L 0.19 TCGA-DK-A2I4-01 5 141041592 141041592 C T ARAP3 Intron 0.13 TCGA-DK-A2I4-01 5 141325351 141325351 C T PCDH12 Silent p.L1050L 0.12 TCGA-DK-A2I4-01 5 141974881 141974881 G A FGF1 Missense_Mutation p.L148F 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 5 14601215 14601215 C T FAM105A Missense_Mutation p.S69L 0.09 tolerated(1) benign(0) TCGA-DK-A2I4-01 5 148411215 148411215 C T SH3TC2 Missense_Mutation p.R346K 0.15 tolerated(0.83) benign(0.002) TCGA-DK-A2I4-01 5 149754546 149754546 C T TCOF1 Silent p.V436V 0.12 TCGA-DK-A2I4-01 5 150110697 150110697 C T DCTN4 Silent p.Q218Q 0.17 TCGA-DK-A2I4-01 5 150947809 150947809 C T FAT2 Silent p.R228R 0.18 TCGA-DK-A2I4-01 5 154308188 154308188 C T GEMIN5 Silent p.K271K 0.14 TCGA-DK-A2I4-01 5 155046 155046 G A PLEKHG4B Silent p.L327L 0.20 TCGA-DK-A2I4-01 5 159665712 159665712 G A FABP6 3'UTR 0.12 TCGA-DK-A2I4-01 5 170222427 170222427 C G GABRP Silent p.L152L 0.09 TCGA-DK-A2I4-01 5 173040145 173040145 C T BOD1 Silent p.Q117Q 0.10 TCGA-DK-A2I4-01 5 176730193 176730193 G C RAB24 Missense_Mutation p.L33V 0.13 tolerated(0.41) benign(0.026) TCGA-DK-A2I4-01 5 176797988 176797988 C G RGS14 Missense_Mutation p.L404V 0.14 tolerated(0.74) probably_damaging(0.999) TCGA-DK-A2I4-01 5 216844 216844 G A CCDC127 Missense_Mutation p.R41C 0.10 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 5 31515224 31515224 G C DROSHA Missense_Mutation p.I387M 0.09 tolerated(0.24) benign(0.002) TCGA-DK-A2I4-01 5 32229910 32229910 C G MTMR12 Missense_Mutation p.E740Q 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A2I4-01 5 33937059 33937059 G C RXFP3 Missense_Mutation p.E72Q 0.06 tolerated(0.55) benign(0.003) TCGA-DK-A2I4-01 5 36035959 36035959 G A UGT3A2 Silent p.L471L 0.21 TCGA-DK-A2I4-01 5 36677231 36677231 G C SLC1A3 Missense_Mutation p.E269Q 0.06 deleterious(0.03) benign(0.282) TCGA-DK-A2I4-01 5 5239963 5239963 C T ADAMTS16 Silent p.F816F 0.12 TCGA-DK-A2I4-01 5 52942189 52942189 G A NDUFS4 Missense_Mutation p.D102N 0.13 deleterious(0.03) probably_damaging(0.967) TCGA-DK-A2I4-01 5 53813855 53813855 G A SNX18 Missense_Mutation p.E25K 0.14 deleterious(0) probably_damaging(0.992) TCGA-DK-A2I4-01 5 55407501 55407501 C T ANKRD55 Silent p.Q358Q 0.09 TCGA-DK-A2I4-01 5 56178366 56178366 C T MAP3K1 Silent p.F1113F 0.11 TCGA-DK-A2I4-01 5 60050591 60050591 G T ELOVL7 Missense_Mutation p.P236T 0.16 deleterious(0.03) probably_damaging(1) TCGA-DK-A2I4-01 5 63257087 63257087 C T HTR1A Missense_Mutation p.A154T 0.20 tolerated(0.11) probably_damaging(0.969) TCGA-DK-A2I4-01 5 6605470 6605470 C T NSUN2 Silent p.R551R 0.09 TCGA-DK-A2I4-01 5 70860685 70860685 C G BDP1 Missense_Mutation p.I2616M 0.09 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 5 70952702 70952702 G C MCCC2 3'UTR 0.08 TCGA-DK-A2I4-01 5 71492567 71492567 G A MAP1B Missense_Mutation p.E1129K 0.12 probably_damaging(0.993) TCGA-DK-A2I4-01 5 76171199 76171199 C T S100Z Silent p.L5L 0.15 TCGA-DK-A2I4-01 5 79616517 79616517 C G SPZ1 Missense_Mutation p.I161M 0.09 deleterious(0.03) unknown(0) TCGA-DK-A2I4-01 5 95011213 95011213 T C SPATA9 Missense_Mutation p.H94R 0.14 tolerated(0.27) benign(0.023) TCGA-DK-A2I4-01 5 96315472 96315472 C A LNPEP Nonsense_Mutation p.S217* 0.10 TCGA-DK-A2I4-01 6 108496093 108496093 G A NR2E1 Silent p.L75L 0.16 TCGA-DK-A2I4-01 6 10911094 10911094 G A SYCP2L Missense_Mutation p.E304K 0.06 tolerated(0.48) possibly_damaging(0.466) TCGA-DK-A2I4-01 6 109771500 109771500 C T MICAL1 Intron 0.10 TCGA-DK-A2I4-01 6 11190713 11190713 G C NEDD9 Silent p.L463L 0.07 TCGA-DK-A2I4-01 6 112476811 112476811 C T LAMA4 Missense_Mutation p.E639K 0.16 tolerated(0.89) benign(0.003) TCGA-DK-A2I4-01 6 114274470 114274470 C T HDAC2 Missense_Mutation p.E204K 0.11 deleterious(0.02) possibly_damaging(0.525) TCGA-DK-A2I4-01 6 117245835 117245835 C G RFX6 Missense_Mutation p.S520C 0.08 deleterious(0) probably_damaging(0.99) TCGA-DK-A2I4-01 6 128410865 128410865 C A PTPRK Nonsense_Mutation p.E479* 0.09 TCGA-DK-A2I4-01 6 128505838 128505838 G A PTPRK Missense_Mutation p.L301F 0.37 tolerated(0.09) benign(0.016) TCGA-DK-A2I4-01 6 12934104 12934104 G C PHACTR1 Missense_Mutation p.E164Q 0.06 unknown(0) TCGA-DK-A2I4-01 6 1313343 1313343 C T FOXQ1 Missense_Mutation p.S135L 0.07 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 6 132271489 132271489 C T CTGF Missense_Mutation p.E162K 0.14 deleterious(0) possibly_damaging(0.844) TCGA-DK-A2I4-01 6 132874133 132874133 C T TAAR8 Missense_Mutation p.A101V 0.12 deleterious(0.01) benign(0.158) TCGA-DK-A2I4-01 6 139101069 139101069 G C CCDC28A Missense_Mutation p.R180T 0.17 tolerated(0.08) possibly_damaging(0.848) TCGA-DK-A2I4-01 6 139186275 139186275 C T ECT2L Silent p.F478F 0.08 TCGA-DK-A2I4-01 6 139564283 139564283 C G TXLNB Missense_Mutation p.E479Q 0.17 deleterious(0.04) possibly_damaging(0.467) TCGA-DK-A2I4-01 6 144858794 144858794 G A UTRN Missense_Mutation p.E2104K 0.09 tolerated(0.09) benign(0.41) TCGA-DK-A2I4-01 6 146127160 146127160 C G FBXO30 Missense_Mutation p.D128H 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 6 152651320 152651320 G A SYNE1 Nonsense_Mutation p.R4834* 0.21 TCGA-DK-A2I4-01 6 152651534 152651534 C T SYNE1 Silent p.L4762L 0.05 TCGA-DK-A2I4-01 6 15512483 15512483 G C JARID2 Missense_Mutation p.R999S 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 6 160477479 160477479 C G IGF2R Silent p.L906L 0.12 TCGA-DK-A2I4-01 6 160479137 160479137 G C IGF2R Missense_Mutation p.G960A 0.12 tolerated(0.17) benign(0.019) TCGA-DK-A2I4-01 6 166580899 166580899 C G T Missense_Mutation p.E61Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 6 17600696 17600696 G A FAM8A1 Missense_Mutation p.G19E 0.37 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DK-A2I4-01 6 17675981 17675981 C T NUP153 Missense_Mutation p.A119T 0.06 tolerated(0.07) benign(0.077) TCGA-DK-A2I4-01 6 24865637 24865637 G C FAM65B Silent p.L152L 0.08 TCGA-DK-A2I4-01 6 24873898 24873898 G C FAM65B Silent p.V77V 0.12 TCGA-DK-A2I4-01 6 25466165 25466165 G A LRRC16A Missense_Mutation p.D227N 0.09 deleterious(0.02) possibly_damaging(0.864) TCGA-DK-A2I4-01 6 25967132 25967132 C T TRIM38 Missense_Mutation p.L128F 0.10 deleterious(0.03) possibly_damaging(0.548) TCGA-DK-A2I4-01 6 26056380 26056380 G A HIST1H1C Silent p.L93L 0.09 TCGA-DK-A2I4-01 6 26199108 26199108 C T HIST1H2AD Missense_Mutation p.E122K 0.10 tolerated_low_confidence(0.2) benign(0.003) TCGA-DK-A2I4-01 6 26199439 26199439 G A HIST1H2AD Silent p.A11A 0.09 TCGA-DK-A2I4-01 6 26407997 26407997 C A BTN3A1 Missense_Mutation p.Q178K 0.17 tolerated(0.18) benign(0.01) TCGA-DK-A2I4-01 6 26411782 26411782 G A BTN3A1 Splice_Site p.X331_splice 0.17 TCGA-DK-A2I4-01 6 27860615 27860615 G A HIST1H2AM Nonsense_Mutation p.Q105* 0.14 TCGA-DK-A2I4-01 6 28056346 28056346 G C ZNF165 Missense_Mutation p.E186Q 0.08 tolerated(0.18) benign(0.141) TCGA-DK-A2I4-01 6 28056916 28056916 G A ZNF165 Missense_Mutation p.E376K 0.09 deleterious(0) possibly_damaging(0.67) TCGA-DK-A2I4-01 6 29454596 29454596 G A MAS1L Nonsense_Mutation p.Q362* 0.14 TCGA-DK-A2I4-01 6 29556417 29556417 G A OR2H2 Silent p.R232R 0.10 TCGA-DK-A2I4-01 6 30043525 30043525 C G RNF39 Missense_Mutation p.K14N 0.08 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I4-01 6 30131831 30131831 C T TRIM15 Nonsense_Mutation p.Q124* 0.13 TCGA-DK-A2I4-01 6 30881724 30881724 C T GTF2H4 Silent p.V451V 0.15 TCGA-DK-A2I4-01 6 31110790 31110790 G A CCHCR1 Missense_Mutation p.S814L 0.08 deleterious(0.05) benign(0.006) TCGA-DK-A2I4-01 6 31731217 31731217 G A SAPCD1 Missense_Mutation p.R47K 0.10 deleterious(0.02) probably_damaging(0.973) TCGA-DK-A2I4-01 6 31856205 31856205 C T EHMT2 Missense_Mutation p.E482K 0.11 deleterious(0.01) possibly_damaging(0.815) TCGA-DK-A2I4-01 6 32008204 32008204 G A CYP21A2 Missense_Mutation p.E321K 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 6 32053680 32053680 C T TNXB Missense_Mutation p.E999K 0.13 benign(0.32) TCGA-DK-A2I4-01 6 32150064 32150064 G A AGER Silent p.H308H 0.40 TCGA-DK-A2I4-01 6 3285315 3285315 G C SLC22A23 Nonsense_Mutation p.S526* 0.07 TCGA-DK-A2I4-01 6 32945290 32945290 C G BRD2 Missense_Mutation p.N424K 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 6 33154363 33154363 C G COL11A2 Intron 0.16 TCGA-DK-A2I4-01 6 33244179 33244179 G A RPS18 Missense_Mutation p.R132Q 0.13 tolerated(0.07) unknown(0) TCGA-DK-A2I4-01 6 33381510 33381510 C T PHF1 Intron 0.08 TCGA-DK-A2I4-01 6 34741334 34741334 G A SNRPC Missense_Mutation p.R156Q 0.07 tolerated_low_confidence(0.3) unknown(0) TCGA-DK-A2I4-01 6 34846498 34846498 C G TAF11 Splice_Site p.X169_splice 0.09 TCGA-DK-A2I4-01 6 35216389 35216389 C T SCUBE3 Silent p.F963F 0.12 TCGA-DK-A2I4-01 6 35216431 35216431 C A SCUBE3 Missense_Mutation p.F977L 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 6 35706280 35706280 C T ARMC12 Silent p.F170F 0.08 TCGA-DK-A2I4-01 6 36652207 36652208 - T CDKN1A Frame_Shift_Ins p.V111Cfs*18 0.26 TCGA-DK-A2I4-01 6 37328321 37328321 G A RNF8 Missense_Mutation p.E71K 0.12 tolerated(0.08) possibly_damaging(0.703) TCGA-DK-A2I4-01 6 37358585 37358585 G A RNF8 3'UTR 0.07 TCGA-DK-A2I4-01 6 37426534 37426534 C T CMTR1 Silent p.F308F 0.07 TCGA-DK-A2I4-01 6 3850398 3850398 C T FAM50B Missense_Mutation p.S118F 0.18 deleterious(0.01) possibly_damaging(0.615) TCGA-DK-A2I4-01 6 41655745 41655745 G T TFEB Missense_Mutation p.L191M 0.15 tolerated(0.22) benign(0.11) TCGA-DK-A2I4-01 6 42034150 42034150 C G TAF8 Missense_Mutation p.T197R 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 6 42236470 42236470 C G TRERF1 Missense_Mutation p.E287Q 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.775) TCGA-DK-A2I4-01 6 43146959 43146959 G A SRF 3'UTR 0.13 TCGA-DK-A2I4-01 6 44227806 44227806 C T NFKBIE Missense_Mutation p.E471K 0.13 deleterious(0) probably_damaging(0.926) TCGA-DK-A2I4-01 6 46851331 46851331 G A GPR116 Missense_Mutation p.L193F 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A2I4-01 6 50805697 50805697 G A TFAP2B Silent p.S277S 0.07 TCGA-DK-A2I4-01 6 56464987 56464987 C G DST Missense_Mutation p.E1235D 0.25 benign(0.015) TCGA-DK-A2I4-01 6 56479189 56479189 C G DST Missense_Mutation p.E1138Q 0.21 benign(0.037) TCGA-DK-A2I4-01 6 70909340 70909340 C A COL19A1 Silent p.L1041L 0.12 TCGA-DK-A2I4-01 6 73843259 73843259 G T KCNQ5 Nonsense_Mutation p.E474* 0.06 TCGA-DK-A2I4-01 6 73843323 73843323 C T KCNQ5 Missense_Mutation p.S495L 0.12 deleterious(0.01) benign(0.153) TCGA-DK-A2I4-01 6 8041391 8041391 G A BLOC1S5 Silent p.L102L 0.08 TCGA-DK-A2I4-01 6 83841961 83841961 G C DOPEY1 Missense_Mutation p.E895Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 6 86256945 86256945 C G SNX14 Splice_Site p.X332_splice 0.14 TCGA-DK-A2I4-01 6 86303449 86303449 G A SNX14 5'UTR 0.10 TCGA-DK-A2I4-01 6 87969858 87969858 G C ZNF292 Missense_Mutation p.E2171Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 7 100212805 100212805 G A MOSPD3 Silent p.%3D 0.13 TCGA-DK-A2I4-01 7 100404054 100404054 C T EPHB4 Missense_Mutation p.M824I 0.19 deleterious(0) probably_damaging(0.99) TCGA-DK-A2I4-01 7 103008184 103008184 C T PSMC2 Missense_Mutation p.H358Y 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-DK-A2I4-01 7 107599732 107599732 C T LAMB1 Silent p.L884L 0.13 TCGA-DK-A2I4-01 7 111509670 111509670 G A DOCK4 Missense_Mutation p.T690I 0.21 tolerated(0.26) benign(0.001) TCGA-DK-A2I4-01 7 1197336 1197336 G T ZFAND2A Missense_Mutation p.H36N 0.08 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 7 121652246 121652246 G A PTPRZ1 Missense_Mutation p.G1049E 0.17 tolerated_low_confidence(0.11) benign(0.194) TCGA-DK-A2I4-01 7 122635052 122635052 C T TAS2R16 Missense_Mutation p.G213S 0.14 tolerated(0.22) possibly_damaging(0.451) TCGA-DK-A2I4-01 7 128490515 128490515 G A FLNC Silent p.A1792A 0.16 TCGA-DK-A2I4-01 7 129691058 129691058 C T ZC3HC1 Intron 0.12 TCGA-DK-A2I4-01 7 129912983 129912983 C T CPA2 Missense_Mutation p.S151F 0.11 tolerated(0.34) benign(0.119) TCGA-DK-A2I4-01 7 143510136 143510136 G A RP11-61L23.2 RNA 0.11 TCGA-DK-A2I4-01 7 143632802 143632802 G A OR2F2 Silent p.Q159Q 0.14 TCGA-DK-A2I4-01 7 150327201 150327201 G C GIMAP6 Silent p.P10P 0.12 TCGA-DK-A2I4-01 7 150439547 150439547 C G GIMAP5 Missense_Mutation p.S107C 0.10 tolerated(0.18) benign(0.359) TCGA-DK-A2I4-01 7 1515921 1515921 C G INTS1 Missense_Mutation p.E1774D 0.17 tolerated(0.23) benign(0.007) TCGA-DK-A2I4-01 7 158526848 158526848 G A ESYT2 3'UTR 0.10 TCGA-DK-A2I4-01 7 16505318 16505318 G A SOSTDC1 5'UTR 0.24 TCGA-DK-A2I4-01 7 18625073 18625073 G A HDAC9 Silent p.L64L 0.18 TCGA-DK-A2I4-01 7 22771127 22771127 C T IL6 Missense_Mutation p.H192Y 0.09 tolerated(0.08) probably_damaging(0.971) TCGA-DK-A2I4-01 7 26242599 26242599 C G CBX3 5'UTR 0.11 TCGA-DK-A2I4-01 7 27856100 27856100 C G TAX1BP1 Missense_Mutation p.L633V 0.18 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I4-01 7 28996953 28996953 G A AC005013.5 5'Flank 0.10 TCGA-DK-A2I4-01 7 30492526 30492526 G A NOD1 Silent p.F169F 0.10 TCGA-DK-A2I4-01 7 33392470 33392470 G C BBS9 Splice_Site p.X513_splice 0.17 TCGA-DK-A2I4-01 7 35674914 35674914 G C HERPUD2 Missense_Mutation p.Q258E 0.11 deleterious(0.03) benign(0.271) TCGA-DK-A2I4-01 7 44073803 44073803 C G RASA4CP RNA 0.12 TCGA-DK-A2I4-01 7 44073872 44073872 C T RASA4CP RNA 0.13 TCGA-DK-A2I4-01 7 44193018 44193018 C T GCK Silent p.L31L 0.10 TCGA-DK-A2I4-01 7 44259671 44259671 G A CAMK2B Missense_Mutation p.P664L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-DK-A2I4-01 7 44281927 44281927 C T CAMK2B Missense_Mutation p.E237K 0.11 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-DK-A2I4-01 7 48311969 48311969 C G ABCA13 Silent p.L902L 0.22 TCGA-DK-A2I4-01 7 48318381 48318381 G C ABCA13 Missense_Mutation p.K2530N 0.26 benign(0.358) TCGA-DK-A2I4-01 7 5085948 5085948 G C RBAK 5'UTR 0.24 TCGA-DK-A2I4-01 7 5569265 5569265 G T ACTB Silent p.L8L 0.14 TCGA-DK-A2I4-01 7 5633134 5633134 G C FSCN1 Missense_Mutation p.Q189H 0.08 tolerated(0.44) benign(0.187) TCGA-DK-A2I4-01 7 6189333 6189333 C T USP42 Silent p.V502V 0.08 TCGA-DK-A2I4-01 7 6624735 6624735 C A ZDHHC4 Silent p.L195L 0.20 TCGA-DK-A2I4-01 7 6730899 6730899 G A ZNF12 Silent p.F558F 0.09 TCGA-DK-A2I4-01 7 6732258 6732258 G A ZNF12 Silent p.F105F 0.11 TCGA-DK-A2I4-01 7 6854450 6854450 C G CCZ1B Missense_Mutation p.R242T 0.07 deleterious(0.01) benign(0.284) TCGA-DK-A2I4-01 7 75172284 75172284 C T HIP1 Missense_Mutation p.D926N 0.14 tolerated(0.12) benign(0.014) TCGA-DK-A2I4-01 7 75172291 75172291 C T HIP1 Silent p.V923V 0.12 TCGA-DK-A2I4-01 7 76027118 76027118 C T SRCRB4D Silent p.A195A 0.10 TCGA-DK-A2I4-01 7 8198207 8198207 G A ICA1 Missense_Mutation p.L219F 0.06 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 7 91631200 91631200 G C AKAP9 Missense_Mutation p.D657H 0.14 probably_damaging(0.961) TCGA-DK-A2I4-01 7 91722446 91722446 C G AKAP9 Missense_Mutation p.Q3132E 0.14 benign(0.346) TCGA-DK-A2I4-01 7 92027928 92027928 G C ANKIB1 Missense_Mutation p.D979H 0.17 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DK-A2I4-01 7 92118624 92118624 C A PEX1 Missense_Mutation p.W1250C 0.14 deleterious(0.02) benign(0.172) TCGA-DK-A2I4-01 7 92147127 92147127 C T PEX1 Silent p.E234E 0.11 TCGA-DK-A2I4-01 7 93055834 93055834 C T CALCR Missense_Mutation p.R454H 0.10 tolerated(0.45) possibly_damaging(0.686) TCGA-DK-A2I4-01 7 97821789 97821789 C T LMTK2 Missense_Mutation p.S671F 0.14 deleterious(0.01) possibly_damaging(0.832) TCGA-DK-A2I4-01 7 99364028 99364028 C T CYP3A4 Silent p.Q279Q 0.14 TCGA-DK-A2I4-01 7 99654714 99654714 G A ZSCAN21 Missense_Mutation p.E29K 0.17 tolerated(0.09) benign(0.008) TCGA-DK-A2I4-01 7 99869490 99869490 G C GATS Missense_Mutation p.I39M 0.11 tolerated(0.08) benign(0.01) TCGA-DK-A2I4-01 8 101014551 101014551 C G RGS22 Missense_Mutation p.R890T 0.16 deleterious(0) possibly_damaging(0.737) TCGA-DK-A2I4-01 8 10468839 10468839 G A RP1L1 Silent p.S923S 0.13 TCGA-DK-A2I4-01 8 110510690 110510690 G C PKHD1L1 Splice_Site p.X3534_splice 0.21 TCGA-DK-A2I4-01 8 121383405 121383405 C T COL14A1 Nonsense_Mutation p.Q1776* 0.08 TCGA-DK-A2I4-01 8 121514760 121514760 A G MTBP Silent p.S546S 0.16 TCGA-DK-A2I4-01 8 125487428 125487428 C G RNF139 Silent p.L26L 0.10 TCGA-DK-A2I4-01 8 125487452 125487452 C G RNF139 Missense_Mutation p.I34M 0.11 tolerated(0.14) benign(0.277) TCGA-DK-A2I4-01 8 125487527 125487527 C G RNF139 Silent p.L59L 0.09 TCGA-DK-A2I4-01 8 132982779 132982779 G C EFR3A Missense_Mutation p.E350Q 0.09 deleterious(0.01) benign(0.398) TCGA-DK-A2I4-01 8 133848934 133848934 G C PHF20L1 Missense_Mutation p.E687Q 0.10 deleterious(0) probably_damaging(0.992) TCGA-DK-A2I4-01 8 133879287 133879287 C A TG Silent p.I14I 0.13 TCGA-DK-A2I4-01 8 133919084 133919084 G T TG Missense_Mutation p.L1262F 0.08 tolerated(1) benign(0.003) TCGA-DK-A2I4-01 8 134225348 134225348 G A WISP1 Missense_Mutation p.S104N 0.12 deleterious(0) probably_damaging(0.91) TCGA-DK-A2I4-01 8 141810664 141810664 C A PTK2 Silent p.V329V 0.08 TCGA-DK-A2I4-01 8 144668986 144668986 C T EEF1D Silent p.K376K 0.05 TCGA-DK-A2I4-01 8 144733392 144733392 G C ZNF623 Missense_Mutation p.Q450H 0.12 deleterious(0.03) probably_damaging(0.974) TCGA-DK-A2I4-01 8 144733612 144733612 G T ZNF623 Nonsense_Mutation p.E524* 0.10 TCGA-DK-A2I4-01 8 144995185 144995185 G T PLEC Missense_Mutation p.A3072E 0.29 benign(0.034) TCGA-DK-A2I4-01 8 144998327 144998327 C T PLEC Missense_Mutation p.E2061K 0.10 unknown(0) TCGA-DK-A2I4-01 8 145007044 145007044 C G PLEC Missense_Mutation p.E689Q 0.07 unknown(0) TCGA-DK-A2I4-01 8 145017953 145017953 C T PLEC Intron 0.12 TCGA-DK-A2I4-01 8 145057596 145057596 C T PARP10 Missense_Mutation p.E721K 0.16 deleterious(0.04) possibly_damaging(0.791) TCGA-DK-A2I4-01 8 145065951 145065951 C G GRINA Missense_Mutation p.I157M 0.10 deleterious(0) probably_damaging(0.942) TCGA-DK-A2I4-01 8 145095934 145095934 C T SPATC1 Missense_Mutation p.S411L 0.11 deleterious(0.04) benign(0.005) TCGA-DK-A2I4-01 8 145267981 145267981 C T MROH1 Intron 0.10 TCGA-DK-A2I4-01 8 21848409 21848409 C T XPO7 Missense_Mutation p.R674C 0.11 deleterious(0) probably_damaging(0.985) TCGA-DK-A2I4-01 8 21958231 21958231 G A FAM160B2 Missense_Mutation p.E490K 0.13 deleterious(0.04) possibly_damaging(0.533) TCGA-DK-A2I4-01 8 48690357 48690357 C T PRKDC Missense_Mutation p.G3977S 0.11 probably_damaging(0.988) TCGA-DK-A2I4-01 8 48772207 48772207 C T PRKDC Missense_Mutation p.D2057N 0.12 benign(0.02) TCGA-DK-A2I4-01 8 56922538 56922538 G C LYN Missense_Mutation p.D470H 0.11 deleterious(0.04) benign(0.133) TCGA-DK-A2I4-01 8 62438579 62438579 C T ASPH Silent p.L619L 0.12 TCGA-DK-A2I4-01 8 67547599 67547599 C T VCPIP1 Missense_Mutation p.D936N 0.16 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I4-01 8 70515500 70515500 G A SULF1 Missense_Mutation p.D379N 0.21 deleterious(0.01) possibly_damaging(0.516) TCGA-DK-A2I4-01 8 70585257 70585257 G A SLCO5A1 Silent p.F798F 0.07 TCGA-DK-A2I4-01 8 73979650 73979650 G C SBSPON Missense_Mutation p.Q241E 0.07 deleterious(0.03) benign(0.423) TCGA-DK-A2I4-01 8 75227753 75227753 G C JPH1 Missense_Mutation p.T161S 0.10 deleterious(0.02) possibly_damaging(0.78) TCGA-DK-A2I4-01 8 86121423 86121423 C T E2F5 Missense_Mutation p.S221L 0.12 deleterious(0.05) benign(0.014) TCGA-DK-A2I4-01 8 90967566 90967566 G A NBN Nonsense_Mutation p.Q448* 0.19 TCGA-DK-A2I4-01 8 91013703 91013703 G A DECR1 5'UTR 0.12 TCGA-DK-A2I4-01 8 91029411 91029411 C G DECR1 Missense_Mutation p.F43L 0.14 deleterious(0.04) benign(0.026) TCGA-DK-A2I4-01 8 94767349 94767349 G C TMEM67 Missense_Mutation p.Q69H 0.09 deleterious(0) possibly_damaging(0.854) TCGA-DK-A2I4-01 8 95892357 95892357 C T INTS8 Silent p.I961I 0.07 TCGA-DK-A2I4-01 8 95893987 95893987 G A CCNE2 Intron 0.10 TCGA-DK-A2I4-01 8 98288992 98288992 C T TSPYL5 Missense_Mutation p.E361K 0.11 deleterious(0.02) benign(0.247) TCGA-DK-A2I4-01 8 99135698 99135698 C G POP1 Missense_Mutation p.Q45E 0.13 tolerated(0.27) benign(0.009) TCGA-DK-A2I4-01 8 99170408 99170408 C T POP1 Missense_Mutation p.S995F 0.11 tolerated(0.7) benign(0.288) TCGA-DK-A2I4-01 8 99440621 99440621 G C KCNS2 Missense_Mutation p.Q138H 0.07 tolerated(0.06) benign(0.027) TCGA-DK-A2I4-01 9 109694815 109694815 C G ZNF462 Missense_Mutation p.S2034C 0.09 probably_damaging(0.968) TCGA-DK-A2I4-01 9 111755015 111755015 G C CTNNAL1 Missense_Mutation p.T139R 0.09 tolerated(0.14) possibly_damaging(0.895) TCGA-DK-A2I4-01 9 114454446 114454446 G C C9orf84 Missense_Mutation p.L1207V 0.15 deleterious(0.02) possibly_damaging(0.873) TCGA-DK-A2I4-01 9 114521611 114521611 A T C9orf84 Intron 0.18 TCGA-DK-A2I4-01 9 117840339 117840339 C A TNC Nonsense_Mutation p.E853* 0.15 TCGA-DK-A2I4-01 9 124906608 124906608 G C NDUFA8 Nonsense_Mutation p.S144* 0.07 TCGA-DK-A2I4-01 9 125621301 125621301 C A RC3H2 Nonsense_Mutation p.E644* 0.18 TCGA-DK-A2I4-01 9 125642554 125642554 C G RC3H2 Intron 0.21 TCGA-DK-A2I4-01 9 125642878 125642878 C G RC3H2 Missense_Mutation p.D319H 0.05 deleterious(0) probably_damaging(0.994) TCGA-DK-A2I4-01 9 125643058 125643058 C A RC3H2 Nonsense_Mutation p.E259* 0.16 TCGA-DK-A2I4-01 9 129870633 129870633 C T ANGPTL2 Silent p.E126E 0.19 TCGA-DK-A2I4-01 9 130434372 130434372 C T STXBP1 Nonsense_Mutation p.Q336* 0.21 TCGA-DK-A2I4-01 9 130494388 130494388 G A TOR2A Silent p.F297F 0.18 TCGA-DK-A2I4-01 9 131087436 131087436 C T COQ4 Silent p.L73L 0.15 TCGA-DK-A2I4-01 9 131185137 131185137 C T CERCAM Intron 0.12 TCGA-DK-A2I4-01 9 131396209 131396209 C G WDR34 Missense_Mutation p.L475F 0.09 deleterious(0.02) benign(0.18) TCGA-DK-A2I4-01 9 132630421 132630421 G C USP20 Silent p.R276R 0.12 TCGA-DK-A2I4-01 9 132630629 132630629 G A USP20 Missense_Mutation p.E346K 0.10 tolerated(0.44) possibly_damaging(0.455) TCGA-DK-A2I4-01 9 134308165 134308165 C T PRRC2B Nonsense_Mutation p.Q93* 0.11 TCGA-DK-A2I4-01 9 136501627 136501627 G A DBH Missense_Mutation p.S45N 0.16 tolerated(0.38) benign(0.003) TCGA-DK-A2I4-01 9 136507468 136507468 C G DBH Nonsense_Mutation p.S209* 0.05 TCGA-DK-A2I4-01 9 139250941 139250941 G T GPSM1 Missense_Mutation p.R587L 0.17 tolerated(0.7) benign(0.177) TCGA-DK-A2I4-01 9 139794080 139794080 G A TRAF2 Missense_Mutation p.E75K 0.15 deleterious(0) probably_damaging(0.981) TCGA-DK-A2I4-01 9 14313493 14313493 G A NFIB Silent p.I6I 0.10 TCGA-DK-A2I4-01 9 14313500 14313500 G A NFIB Missense_Mutation p.S4F 0.10 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-DK-A2I4-01 9 17484452 17484452 G A CNTLN Missense_Mutation p.E1339K 0.11 deleterious(0.01) probably_damaging(0.928) TCGA-DK-A2I4-01 9 21187338 21187338 C G IFNA4 Missense_Mutation p.E65Q 0.06 tolerated(0.5) benign(0.146) TCGA-DK-A2I4-01 9 21334174 21334174 G A KLHL9 Missense_Mutation p.R229W 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 9 32541498 32541498 C T TOPORS Missense_Mutation p.E1009K 0.05 deleterious_low_confidence(0.02) unknown(0) TCGA-DK-A2I4-01 9 33948389 33948389 G T UBAP2 Nonsense_Mutation p.S418* 0.06 TCGA-DK-A2I4-01 9 34257247 34257247 C T KIF24 Silent p.L786L 0.09 TCGA-DK-A2I4-01 9 35076535 35076535 C G FANCG Missense_Mutation p.E324Q 0.12 tolerated(0.23) possibly_damaging(0.756) TCGA-DK-A2I4-01 9 35077090 35077090 C G FANCG Missense_Mutation p.E219Q 0.17 tolerated(0.05) possibly_damaging(0.904) TCGA-DK-A2I4-01 9 35310490 35310490 C T UNC13B Missense_Mutation p.S263F 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-DK-A2I4-01 9 37744481 37744481 G A FRMPD1 Missense_Mutation p.D818N 0.08 tolerated(0.46) benign(0.003) TCGA-DK-A2I4-01 9 71080072 71080072 T A PGM5 Missense_Mutation p.N369K 0.10 deleterious(0) probably_damaging(0.975) TCGA-DK-A2I4-01 9 72930435 72930435 C G SMC5 Missense_Mutation p.Q583E 0.12 deleterious(0) possibly_damaging(0.5) TCGA-DK-A2I4-01 9 79322056 79322056 C T PRUNE2 Missense_Mutation p.D1712N 0.12 tolerated(0.32) benign(0.001) TCGA-DK-A2I4-01 X 100667669 100667669 G A HNRNPH2 Missense_Mutation p.M231I 0.25 tolerated(0.15) benign(0.022) TCGA-DK-A2I4-01 X 10106775 10106775 C T WWC3 Silent p.L961L 0.14 TCGA-DK-A2I4-01 X 102337131 102337131 C A NXF3 Intron 0.22 TCGA-DK-A2I4-01 X 107169434 107169434 G C MID2 Missense_Mutation p.E570Q 0.24 tolerated(0.13) probably_damaging(0.954) TCGA-DK-A2I4-01 X 109416484 109416484 G A TMEM164 Silent p.V233V 0.21 TCGA-DK-A2I4-01 X 110653275 110653275 C T DCX Missense_Mutation p.E199K 0.19 deleterious(0.03) possibly_damaging(0.861) TCGA-DK-A2I4-01 X 132440162 132440162 C G GPC4 Missense_Mutation p.E300Q 0.16 tolerated(0.16) possibly_damaging(0.878) TCGA-DK-A2I4-01 X 141291072 141291072 C T MAGEC2 Silent p.L234L 0.14 TCGA-DK-A2I4-01 X 14708969 14708969 G A GLRA2 Silent p.K356K 0.12 TCGA-DK-A2I4-01 X 148037319 148037319 G A AFF2 Missense_Mutation p.E582K 0.19 tolerated(0.48) probably_damaging(0.995) TCGA-DK-A2I4-01 X 152958597 152958597 C G SLC6A8 Silent p.L293L 0.33 TCGA-DK-A2I4-01 X 153674218 153674218 G C FAM50A Missense_Mutation p.E85D 0.24 tolerated(0.11) benign(0.127) TCGA-DK-A2I4-01 X 153701059 153701059 C G PLXNA3 3'UTR 0.20 TCGA-DK-A2I4-01 X 154088779 154088779 C T F8 Silent p.V2276V 0.18 TCGA-DK-A2I4-01 X 15605900 15605900 C A ACE2 Nonsense_Mutation p.G260* 0.10 TCGA-DK-A2I4-01 X 17749980 17749980 C T NHS Missense_Mutation p.S1430F 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I4-01 X 19369482 19369482 C T PDHA1 Silent p.F163F 0.29 TCGA-DK-A2I4-01 X 41201987 41201987 G C DDX3X Intron 0.14 TCGA-DK-A2I4-01 X 41202027 41202027 G C DDX3X Missense_Mutation p.E161Q 0.20 deleterious(0.01) benign(0.358) TCGA-DK-A2I4-01 X 41203033 41203033 G A DDX3X Silent p.Q241Q 0.23 TCGA-DK-A2I4-01 X 46913947 46913947 G A JADE3 Missense_Mutation p.E454K 0.25 tolerated(0.13) benign(0.2) TCGA-DK-A2I4-01 X 48650256 48650256 C T GATA1 Nonsense_Mutation p.Q76* 0.13 TCGA-DK-A2I4-01 X 48650377 48650377 C G GATA1 Missense_Mutation p.S116C 0.25 deleterious(0) benign(0.112) TCGA-DK-A2I4-01 X 48650546 48650546 C A GATA1 Missense_Mutation p.F172L 0.24 tolerated(0.64) benign(0.023) TCGA-DK-A2I4-01 X 48650590 48650590 C T GATA1 Missense_Mutation p.S187F 0.25 deleterious(0) possibly_damaging(0.901) TCGA-DK-A2I4-01 X 50129585 50129585 C G DGKK Splice_Site 0.15 TCGA-DK-A2I4-01 X 52681310 52681310 C T SSX7 Missense_Mutation p.G91E 0.19 tolerated(0.06) possibly_damaging(0.484) TCGA-DK-A2I4-01 X 54975561 54975561 C T PFKFB1 Missense_Mutation p.E314K 0.24 possibly_damaging(0.842) TCGA-DK-A2I4-01 X 55051212 55051212 C T ALAS2 Silent p.K81K 0.24 TCGA-DK-A2I4-01 X 69672536 69672536 C A DLG3 Intron 0.24 TCGA-DK-A2I4-01 Y 6954349 6954349 G A TBL1Y Missense_Mutation p.D391N 0.23 tolerated(0.09) benign(0.292) TCGA-DK-A2I6-01 10 105209283 105209283 G A CALHM2 Missense_Mutation p.S139F 0.32 deleterious(0.02) benign(0.257) TCGA-DK-A2I6-01 10 123845774 123845774 G A TACC2 Silent p.V1253V 0.39 TCGA-DK-A2I6-01 10 24880173 24880173 G A ARHGAP21 Silent p.V1377V 0.48 TCGA-DK-A2I6-01 10 53459010 53459012 CTC - CSTF2T In_Frame_Del p.E100del 0.20 TCGA-DK-A2I6-01 10 61007230 61007230 T C FAM13C 3'UTR 0.24 TCGA-DK-A2I6-01 10 68688007 68688007 T C LRRTM3 Missense_Mutation p.Y445H 0.24 deleterious(0.04) probably_damaging(0.968) TCGA-DK-A2I6-01 10 85973933 85973933 C T CDHR1 Silent p.V712V 0.28 TCGA-DK-A2I6-01 10 89717673 89717673 G A PTEN Missense_Mutation p.R233Q 0.27 tolerated(0.12) benign(0.156) TCGA-DK-A2I6-01 11 1027765 1027765 G A MUC6 Missense_Mutation p.A634V 0.67 unknown(0) TCGA-DK-A2I6-01 11 1028662 1028662 G A MUC6 Silent p.F525F 0.75 TCGA-DK-A2I6-01 11 1083168 1083168 G C MUC2 Missense_Mutation p.E690Q 0.46 benign(0.053) TCGA-DK-A2I6-01 11 118342391 118342391 C T KMT2A Nonsense_Mutation p.R173* 0.33 TCGA-DK-A2I6-01 11 118392755 118392756 TG - KMT2A Frame_Shift_Del p.V3930Hfs*6 0.32 TCGA-DK-A2I6-01 11 118889490 118889490 G A TRAPPC4 5'UTR 0.25 TCGA-DK-A2I6-01 11 123598256 123598256 C T ZNF202 Missense_Mutation p.E294K 0.47 tolerated(0.53) possibly_damaging(0.81) TCGA-DK-A2I6-01 11 12525871 12525871 C T PARVA Silent p.A224A 0.68 TCGA-DK-A2I6-01 11 128805599 128805599 G C TP53AIP1 Missense_Mutation p.L88V 0.38 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I6-01 11 130785628 130785628 G A SNX19 Silent p.L69L 0.15 TCGA-DK-A2I6-01 11 46920516 46920516 G A LRP4 Silent p.L205L 0.67 TCGA-DK-A2I6-01 11 47587500 47587500 G A PTPMT1 Missense_Mutation p.E73K 0.45 deleterious(0) possibly_damaging(0.746) TCGA-DK-A2I6-01 11 63313831 63313831 G A RARRES3 3'UTR 0.43 TCGA-DK-A2I6-01 11 64570095 64570095 A G MAP4K2 Missense_Mutation p.I62T 0.39 deleterious(0) probably_damaging(0.966) TCGA-DK-A2I6-01 11 65628568 65628568 C T MUS81 Missense_Mutation p.S87L 0.48 tolerated(0.06) benign(0.019) TCGA-DK-A2I6-01 11 67071614 67071614 G A SSH3 Missense_Mutation p.R31Q 0.48 tolerated(0.31) benign(0.033) TCGA-DK-A2I6-01 11 67271650 67271650 A G PITPNM1 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.985) TCGA-DK-A2I6-01 11 72420989 72420989 G C ARAP1 Missense_Mutation p.I483M 0.34 deleterious(0) possibly_damaging(0.686) TCGA-DK-A2I6-01 12 23999076 23999076 T A SOX5 Missense_Mutation p.T108S 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A2I6-01 12 25149238 25149238 G A C12orf77 Silent p.L13L 0.21 TCGA-DK-A2I6-01 12 31256902 31256902 G A DDX11 Missense_Mutation p.E950K 0.50 deleterious_low_confidence(0) benign(0.292) TCGA-DK-A2I6-01 12 4920654 4920654 G A KCNA6 Missense_Mutation p.G483R 0.30 tolerated_low_confidence(0.23) benign(0.328) TCGA-DK-A2I6-01 12 51639758 51639758 G T SMAGP Silent p.A87A 0.35 TCGA-DK-A2I6-01 12 53040646 53040646 C G KRT2 Silent p.L449L 0.11 TCGA-DK-A2I6-01 12 53565213 53565213 G C CSAD Missense_Mutation p.S182C 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-DK-A2I6-01 12 56091544 56091544 A G ITGA7 Silent p.D452D 0.42 TCGA-DK-A2I6-01 12 56120509 56120509 G A CD63 Missense_Mutation p.S134L 0.45 tolerated(0.35) benign(0.002) TCGA-DK-A2I6-01 12 57918588 57918588 C T MBD6 Missense_Mutation p.P67S 0.30 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I6-01 12 57918589 57918589 C T MBD6 Missense_Mutation p.P67L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I6-01 12 58121176 58121176 C T AGAP2 Missense_Mutation p.R1016Q 0.39 tolerated(1) benign(0.03) TCGA-DK-A2I6-01 12 64199128 64199128 G A TMEM5 Missense_Mutation p.M286I 0.32 tolerated(0.06) benign(0.008) TCGA-DK-A2I6-01 12 645436 645436 A G B4GALNT3 Missense_Mutation p.N109S 0.13 tolerated(0.14) benign(0.118) TCGA-DK-A2I6-01 12 7635263 7635263 G A CD163 Nonsense_Mutation p.R1075* 0.46 TCGA-DK-A2I6-01 12 76447574 76447574 C T NAP1L1 Missense_Mutation p.G249E 0.24 deleterious(0.04) probably_damaging(0.943) TCGA-DK-A2I6-01 12 78583761 78583761 C T NAV3 Intron 0.33 TCGA-DK-A2I6-01 12 80328602 80328602 T A PPP1R12A Missense_Mutation p.K37M 0.62 deleterious(0) probably_damaging(0.992) TCGA-DK-A2I6-01 12 8083956 8083956 C A SLC2A3 Missense_Mutation p.G132V 0.26 deleterious(0) probably_damaging(0.993) TCGA-DK-A2I6-01 12 94965478 94965478 C T TMCC3 Silent p.K389K 0.26 TCGA-DK-A2I6-01 12 95867917 95867917 C T METAP2 5'UTR 0.29 TCGA-DK-A2I6-01 12 96728597 96728597 T A CDK17 Missense_Mutation p.R6S 0.23 deleterious_low_confidence(0) benign(0.146) TCGA-DK-A2I6-01 13 111160418 111160418 C G COL4A2 Silent p.P1577P 0.18 TCGA-DK-A2I6-01 13 23906653 23906653 G A SACS Missense_Mutation p.R3788C 0.36 probably_damaging(0.995) TCGA-DK-A2I6-01 13 25827950 25827950 T C MTMR6 Missense_Mutation p.Q433R 0.32 deleterious(0) probably_damaging(0.989) TCGA-DK-A2I6-01 13 30077186 30077188 AGA - MTUS2 In_Frame_Del p.K1330del 0.12 TCGA-DK-A2I6-01 13 41495622 41495622 C A SUGT1P3 RNA 0.42 TCGA-DK-A2I6-01 13 41706188 41706188 C T KBTBD6 Missense_Mutation p.E154K 0.40 tolerated(0.05) probably_damaging(0.917) TCGA-DK-A2I6-01 13 79190511 79190511 G C RNF219 Missense_Mutation p.P462R 0.37 tolerated(0.2) benign(0.222) TCGA-DK-A2I6-01 13 99908094 99908094 G C GPR18 Silent p.V11V 0.26 TCGA-DK-A2I6-01 14 100604145 100604145 G A EVL Intron 0.59 TCGA-DK-A2I6-01 14 102550300 102550300 C T HSP90AA1 Missense_Mutation p.D512N 0.65 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A2I6-01 14 104174929 104174929 G A XRCC3 Silent p.L41L 0.72 TCGA-DK-A2I6-01 14 20711591 20711591 C G OR11H4 Missense_Mutation p.S214C 0.11 deleterious(0.02) benign(0.33) TCGA-DK-A2I6-01 14 23559767 23559767 G A ACIN1 Silent p.L152L 0.13 TCGA-DK-A2I6-01 14 32562941 32562941 T C ARHGAP5 Silent p.H1022H 0.18 TCGA-DK-A2I6-01 14 33291834 33291834 C A AKAP6 Missense_Mutation p.S1605R 0.16 deleterious(0) probably_damaging(0.997) TCGA-DK-A2I6-01 14 35871211 35871211 C A NFKBIA 3'UTR 0.47 TCGA-DK-A2I6-01 14 64457735 64457735 A G SYNE2 Missense_Mutation p.M850V 0.83 benign(0.001) TCGA-DK-A2I6-01 14 65233430 65233430 G A SPTB Intron 0.78 TCGA-DK-A2I6-01 14 81662522 81662522 G A GTF2A1 Missense_Mutation p.S181L 0.73 deleterious(0.04) benign(0.086) TCGA-DK-A2I6-01 14 96949491 96949491 G A AK7 Missense_Mutation p.E637K 0.67 tolerated(0.9) benign(0.012) TCGA-DK-A2I6-01 15 28460863 28460863 C T HERC2 Silent p.Q2038Q 0.47 TCGA-DK-A2I6-01 15 29393827 29393827 G A APBA2 Missense_Mutation p.R455H 0.33 deleterious(0.03) probably_damaging(0.979) TCGA-DK-A2I6-01 15 40660107 40660107 C T DISP2 Silent p.L598L 0.60 TCGA-DK-A2I6-01 15 43622469 43622469 C G LCMT2 Missense_Mutation p.Q73H 0.61 tolerated(0.39) possibly_damaging(0.726) TCGA-DK-A2I6-01 15 76017546 76017546 G A ODF3L1 Silent p.R72R 0.06 TCGA-DK-A2I6-01 15 80845057 80845057 A G ARNT2 Missense_Mutation p.D344G 0.62 deleterious(0.01) possibly_damaging(0.539) TCGA-DK-A2I6-01 15 83710670 83710670 G C BTBD1 Silent p.L224L 0.52 TCGA-DK-A2I6-01 15 93588760 93588760 G T RGMA Missense_Mutation p.A282D 0.77 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 15 98995120 98995120 C T FAM169B Missense_Mutation p.E102K 0.70 tolerated(0.14) benign(0.039) TCGA-DK-A2I6-01 16 19073098 19073101 AGGA - TMC7 Splice_Site p.X703_splice 0.47 TCGA-DK-A2I6-01 16 2436192 2436192 C T ABCA17P RNA 0.42 TCGA-DK-A2I6-01 16 31927008 31927008 A T ZNF267 Missense_Mutation p.I480F 0.16 tolerated(0.11) possibly_damaging(0.829) TCGA-DK-A2I6-01 16 48130786 48130786 G A ABCC12 Silent p.L1022L 0.39 TCGA-DK-A2I6-01 16 55909153 55909153 C T CES5A Intron 0.17 TCGA-DK-A2I6-01 16 66946442 66946442 T A CDH16 Missense_Mutation p.I442F 0.18 deleterious(0.02) possibly_damaging(0.643) TCGA-DK-A2I6-01 16 68269814 68269814 C G ESRP2 Silent p.L45L 0.48 TCGA-DK-A2I6-01 16 70698173 70698173 T C MTSS1L Missense_Mutation p.T551A 0.24 tolerated(0.51) benign(0.002) TCGA-DK-A2I6-01 16 72153274 72153274 T C PMFBP1 Intron 0.26 TCGA-DK-A2I6-01 16 74330812 74330812 G A PSMD7 5'UTR 0.52 TCGA-DK-A2I6-01 16 81712175 81712175 G C CMIP Missense_Mutation p.E444Q 0.45 tolerated_low_confidence(0.44) benign(0.006) TCGA-DK-A2I6-01 16 85011581 85011581 G C ZDHHC7 Missense_Mutation p.L227V 0.52 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I6-01 16 89958628 89958628 C T TCF25 Silent p.P214P 0.14 TCGA-DK-A2I6-01 17 10545784 10545784 G C MYH3 Missense_Mutation p.S613C 0.68 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A2I6-01 17 18682037 18682037 C T FBXW10 Missense_Mutation p.S862L 0.18 deleterious(0.03) possibly_damaging(0.589) TCGA-DK-A2I6-01 17 32964390 32964390 C T TMEM132E Silent p.T698T 0.11 TCGA-DK-A2I6-01 17 35872428 35872428 G A DUSP14 Missense_Mutation p.M18I 0.62 tolerated(0.4) benign(0.017) TCGA-DK-A2I6-01 17 37879903 37879903 C T ERBB2 Missense_Mutation p.T733I 0.94 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 17 37947792 37947792 G A IKZF3 Nonsense_Mutation p.Q157* 0.91 TCGA-DK-A2I6-01 17 44076789 44076789 C T STH Silent p.L48L 0.18 TCGA-DK-A2I6-01 17 48153806 48153806 C T ITGA3 Silent p.L597L 0.16 TCGA-DK-A2I6-01 17 48190393 48190393 G A SAMD14 Missense_Mutation p.S401F 0.14 deleterious(0) probably_damaging(0.918) TCGA-DK-A2I6-01 17 48545626 48545626 C T CHAD Silent p.L183L 0.09 TCGA-DK-A2I6-01 17 5086957 5086957 C G ZNF594 Missense_Mutation p.V199L 0.30 tolerated(0.24) benign(0.334) TCGA-DK-A2I6-01 17 5087090 5087090 T G ZNF594 Silent p.P154P 0.27 TCGA-DK-A2I6-01 17 5371895 5371895 G A DHX33 Silent p.L95L 0.24 TCGA-DK-A2I6-01 17 56809940 56809940 T C RAD51C Intron 0.46 TCGA-DK-A2I6-01 17 63533517 63533517 C T AXIN2 Missense_Mutation p.G546D 0.08 deleterious(0.05) possibly_damaging(0.628) TCGA-DK-A2I6-01 17 7121570 7121570 G C DLG4 Nonsense_Mutation p.S50* 0.41 TCGA-DK-A2I6-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.44 TCGA-DK-A2I6-01 17 77808682 77808682 G C CBX4 Silent p.V253V 0.45 TCGA-DK-A2I6-01 18 19231568 19231568 C A ABHD3 Missense_Mutation p.G405V 0.56 tolerated(0.18) possibly_damaging(0.851) TCGA-DK-A2I6-01 18 19284651 19284651 C G ABHD3 5'UTR 0.39 TCGA-DK-A2I6-01 18 19359586 19359586 G C MIB1 Missense_Mutation p.G283A 0.46 deleterious(0) possibly_damaging(0.823) TCGA-DK-A2I6-01 18 19405767 19405767 C T MIB1 Intron 0.42 TCGA-DK-A2I6-01 18 2954522 2954522 C T LPIN2 Missense_Mutation p.E90K 0.43 tolerated(0.09) possibly_damaging(0.491) TCGA-DK-A2I6-01 18 56348424 56348424 T C MALT1 Missense_Mutation p.S78P 0.64 deleterious(0) probably_damaging(0.928) TCGA-DK-A2I6-01 19 17321180 17321180 G A MYO9B Silent p.E1929E 0.53 TCGA-DK-A2I6-01 19 1796870 1796870 G C ATP8B3 Silent p.P531P 0.10 TCGA-DK-A2I6-01 19 18092569 18092569 G A KCNN1 Missense_Mutation p.E184K 0.42 tolerated(0.18) benign(0.035) TCGA-DK-A2I6-01 19 18377736 18377736 G A KIAA1683 Missense_Mutation p.P205L 0.21 tolerated(0.32) possibly_damaging(0.795) TCGA-DK-A2I6-01 19 22941314 22941314 G A ZNF99 Missense_Mutation p.S466L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A2I6-01 19 34884959 34884959 G T GPI Silent p.A361A 0.29 TCGA-DK-A2I6-01 19 35505212 35505212 C T GRAMD1A Silent p.T330T 0.35 TCGA-DK-A2I6-01 19 36157752 36157752 C T UPK1A Missense_Mutation p.S13F 0.29 tolerated(0.5) unknown(0) TCGA-DK-A2I6-01 19 36832186 36832186 A C ZFP14 Missense_Mutation p.F181C 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A2I6-01 19 39897497 39897497 C T ZFP36 5'UTR 0.33 TCGA-DK-A2I6-01 19 41223370 41223370 G A ITPKC Silent p.K110K 0.29 TCGA-DK-A2I6-01 19 42410644 42410644 G A ARHGEF1 Missense_Mutation p.E858K 0.35 deleterious(0) possibly_damaging(0.7) TCGA-DK-A2I6-01 19 4338736 4338736 C T STAP2 Silent p.L5L 0.24 TCGA-DK-A2I6-01 19 44008260 44008260 C T PHLDB3 Missense_Mutation p.R4Q 0.64 tolerated_low_confidence(0.13) benign(0.172) TCGA-DK-A2I6-01 19 44418655 44418655 C G ZNF45 Missense_Mutation p.K311N 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A2I6-01 19 45867774 45867774 T C ERCC2 Missense_Mutation p.Y209C 0.24 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I6-01 19 49005723 49005723 A G LMTK3 Missense_Mutation p.L283P 0.13 probably_damaging(0.988) TCGA-DK-A2I6-01 19 49925885 49925885 C T PTH2 Missense_Mutation p.G48E 0.45 tolerated_low_confidence(0.92) possibly_damaging(0.479) TCGA-DK-A2I6-01 19 50311871 50311871 C T FUZ Silent p.L306L 0.45 TCGA-DK-A2I6-01 19 50312751 50312751 C T FUZ Missense_Mutation p.E192K 0.27 tolerated(0.17) benign(0.071) TCGA-DK-A2I6-01 19 6836572 6836572 G A VAV1 Nonsense_Mutation p.W636* 0.19 TCGA-DK-A2I6-01 19 8431173 8431173 G A ANGPTL4 Missense_Mutation p.D173N 0.38 tolerated(0.61) benign(0.334) TCGA-DK-A2I6-01 19 8431175 8431175 C A ANGPTL4 Missense_Mutation p.D173E 0.36 tolerated(0.54) benign(0.248) TCGA-DK-A2I6-01 19 9076683 9076683 G T MUC16 Missense_Mutation p.A3588E 0.07 unknown(0) TCGA-DK-A2I6-01 1 12081705 12081705 G A MIIP 5'UTR 0.23 TCGA-DK-A2I6-01 1 14106203 14106203 A G PRDM2 Missense_Mutation p.K638R 0.16 possibly_damaging(0.728) TCGA-DK-A2I6-01 1 145474162 145474162 G T ANKRD34A Silent p.L278L 0.34 TCGA-DK-A2I6-01 1 145580411 145580411 C G PIAS3 Intron 0.21 TCGA-DK-A2I6-01 1 154224128 154224128 A G UBAP2L Missense_Mutation p.S555G 0.12 deleterious(0) unknown(0) TCGA-DK-A2I6-01 1 155112758 155112758 G C DPM3 Missense_Mutation p.L17V 0.89 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I6-01 1 156100457 156100457 G A LMNA Missense_Mutation p.D136N 0.71 tolerated(0.06) benign(0.377) TCGA-DK-A2I6-01 1 156713195 156713195 G A HDGF 3'UTR 0.26 TCGA-DK-A2I6-01 1 156756616 156756616 A G PRCC Missense_Mutation p.I245V 0.33 tolerated(0.05) probably_damaging(0.99) TCGA-DK-A2I6-01 1 16475491 16475491 C A EPHA2 Missense_Mutation p.V69L 0.51 deleterious(0.01) probably_damaging(0.93) TCGA-DK-A2I6-01 1 167906233 167906233 G A DCAF6 Silent p.R28R 0.40 TCGA-DK-A2I6-01 1 169519105 169519105 G A F5 Silent p.I515I 0.17 TCGA-DK-A2I6-01 1 169845137 169845137 A C SCYL3 Silent p.V149V 0.06 TCGA-DK-A2I6-01 1 17402183 17402190 GGGGATGG - PADI2 Frame_Shift_Del p.P480Rfs*71 0.44 TCGA-DK-A2I6-01 1 17738662 17738662 C T RCC2 Missense_Mutation p.E448K 0.49 deleterious(0.01) benign(0.054) TCGA-DK-A2I6-01 1 178269155 178269155 A G RASAL2 Missense_Mutation p.Q120R 0.46 tolerated(1) benign(0.104) TCGA-DK-A2I6-01 1 18152535 18152535 C T ACTL8 Nonsense_Mutation p.Q208* 0.65 TCGA-DK-A2I6-01 1 200954055 200954055 C T KIF21B Silent p.R1245R 0.31 TCGA-DK-A2I6-01 1 20107204 20107204 C T TMCO4 Silent p.L16L 0.49 TCGA-DK-A2I6-01 1 201779122 201779122 G C NAV1 Missense_Mutation p.E1484Q 0.35 deleterious(0) probably_damaging(0.962) TCGA-DK-A2I6-01 1 201932815 201932815 G A TIMM17A Missense_Mutation p.D88N 0.45 deleterious(0) possibly_damaging(0.538) TCGA-DK-A2I6-01 1 203155753 203155753 C T CHI3L1 5'UTR 0.36 TCGA-DK-A2I6-01 1 22165877 22165877 G A HSPG2 Silent p.I3292I 0.56 TCGA-DK-A2I6-01 1 224922305 224922305 G A CNIH3 Missense_Mutation p.D118N 0.42 deleterious(0) probably_damaging(0.995) TCGA-DK-A2I6-01 1 225152221 225152221 A G DNAH14 Silent p.L136L 0.48 TCGA-DK-A2I6-01 1 226175920 226175920 C T SDE2 Missense_Mutation p.V271I 0.13 tolerated(0.19) benign(0.053) TCGA-DK-A2I6-01 1 227152913 227152913 C T ADCK3 Silent p.F130F 0.34 TCGA-DK-A2I6-01 1 23782407 23782407 G A ASAP3 Silent p.F105F 0.66 TCGA-DK-A2I6-01 1 242383325 242383325 C A PLD5 Missense_Mutation p.G234C 0.39 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I6-01 1 248112660 248112660 T C OR2L8 Silent p.Y167Y 0.22 TCGA-DK-A2I6-01 1 248224484 248224484 T C OR2L3 Silent p.Y167Y 0.11 TCGA-DK-A2I6-01 1 24932122 24932122 G A NCMAP Missense_Mutation p.E65K 0.61 deleterious(0.05) probably_damaging(0.994) TCGA-DK-A2I6-01 1 26161564 26161564 C T AUNIP Missense_Mutation p.G332R 0.06 tolerated(0.47) probably_damaging(0.991) TCGA-DK-A2I6-01 1 26752761 26752761 C T LIN28A Missense_Mutation p.H148Y 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-DK-A2I6-01 1 27189796 27189796 G C SFN Missense_Mutation p.E31D 0.09 deleterious_low_confidence(0.03) benign(0.127) TCGA-DK-A2I6-01 1 27332436 27332436 C G FAM46B Nonstop_Mutation p.*426Sext*26 0.60 TCGA-DK-A2I6-01 1 28290197 28290197 C T XKR8 Silent p.Y161Y 0.75 TCGA-DK-A2I6-01 1 29095440 29095440 G A YTHDF2 Splice_Site p.X573_splice 0.19 TCGA-DK-A2I6-01 1 34238233 34238233 C G CSMD2 Missense_Mutation p.G555R 0.04 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 1 3624302 3624302 C T TP73 Missense_Mutation p.H126Y 0.22 tolerated(0.12) benign(0.406) TCGA-DK-A2I6-01 1 40525754 40525754 A G CAP1 Missense_Mutation p.Y43C 0.43 tolerated(0.21) benign(0.03) TCGA-DK-A2I6-01 1 47181986 47181986 G A EFCAB14 Silent p.L105L 0.28 TCGA-DK-A2I6-01 1 6524508 6524508 G A TNFRSF25 Missense_Mutation p.R157C 0.65 deleterious(0.04) possibly_damaging(0.827) TCGA-DK-A2I6-01 1 66102578 66102578 T C LEPR Silent p.N1126N 0.17 TCGA-DK-A2I6-01 1 880925 880925 C T NOC2L Missense_Mutation p.D676N 0.30 deleterious(0.03) possibly_damaging(0.641) TCGA-DK-A2I6-01 20 17207867 17207867 A T PCSK2 5'UTR 0.33 TCGA-DK-A2I6-01 20 23029241 23029241 C T THBD Missense_Mutation p.D301N 0.39 tolerated(0.25) benign(0.007) TCGA-DK-A2I6-01 20 30193752 30193752 G A ID1 Intron 0.41 TCGA-DK-A2I6-01 20 34487428 34487428 G A PHF20 Missense_Mutation p.M473I 0.29 deleterious(0.03) benign(0.175) TCGA-DK-A2I6-01 20 3781635 3781635 G A CDC25B Silent p.K200K 0.35 TCGA-DK-A2I6-01 20 39832302 39832302 C T ZHX3 Missense_Mutation p.E419K 0.44 deleterious(0.01) possibly_damaging(0.718) TCGA-DK-A2I6-01 20 52774035 52774035 C T CYP24A1 Silent p.Q442Q 0.18 TCGA-DK-A2I6-01 20 58450426 58450426 C G SYCP2 Missense_Mutation p.W1083C 0.44 tolerated(0.16) possibly_damaging(0.794) TCGA-DK-A2I6-01 21 37603050 37603050 C T DOPEY2 Silent p.S656S 0.46 TCGA-DK-A2I6-01 21 40720485 40720485 C G HMGN1 Missense_Mutation p.A12P 0.19 tolerated(0.06) possibly_damaging(0.529) TCGA-DK-A2I6-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.32 deleterious(0) possibly_damaging(0.835) TCGA-DK-A2I6-01 21 45507706 45507706 C G TRAPPC10 Missense_Mutation p.P889R 0.38 deleterious(0.05) benign(0.03) TCGA-DK-A2I6-01 21 45518410 45518410 A T TRAPPC10 Missense_Mutation p.Y1114F 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A2I6-01 22 19462610 19462610 G A UFD1L Silent p.P50P 0.37 TCGA-DK-A2I6-01 22 19965031 19965031 G A ARVCF Nonsense_Mutation p.Q593* 0.39 TCGA-DK-A2I6-01 22 23011260 23011260 C T IGLV3-27 Missense_Mutation p.S108F 0.41 deleterious(0) probably_damaging(0.917) TCGA-DK-A2I6-01 22 23165633 23165633 G A IGLV2-8 Missense_Mutation p.M68I 0.42 tolerated_low_confidence(0.28) benign(0.002) TCGA-DK-A2I6-01 22 40859360 40859360 C T MKL1 Intron 0.50 TCGA-DK-A2I6-01 22 41565529 41565529 G T EP300 Missense_Mutation p.D1399Y 0.34 probably_damaging(1) TCGA-DK-A2I6-01 22 41615486 41615486 G A L3MBTL2 Missense_Mutation p.D222N 0.43 tolerated(0.22) possibly_damaging(0.893) TCGA-DK-A2I6-01 22 41922250 41922250 C G POLR3H 3'UTR 0.43 TCGA-DK-A2I6-01 22 42084861 42084861 C T NHP2L1 5'UTR 0.34 TCGA-DK-A2I6-01 22 42172208 42172208 C G MEI1 Missense_Mutation p.R883G 0.39 deleterious(0) benign(0.103) TCGA-DK-A2I6-01 2 108999925 108999925 A G SULT1C4 Missense_Mutation p.K192E 0.64 tolerated(0.56) benign(0.043) TCGA-DK-A2I6-01 2 109292446 109292446 C G LIMS1 Missense_Mutation p.R265G 0.61 deleterious(0) possibly_damaging(0.881) TCGA-DK-A2I6-01 2 114713209 114713209 A G ACTR3 Missense_Mutation p.I363V 0.10 tolerated(1) benign(0.009) TCGA-DK-A2I6-01 2 125175130 125175130 G C CNTNAP5 Missense_Mutation p.K164N 0.50 tolerated(0.05) benign(0.012) TCGA-DK-A2I6-01 2 142888275 142888275 T C LRP1B Silent p.L8L 0.33 TCGA-DK-A2I6-01 2 152317679 152317679 G T RIF1 Missense_Mutation p.V1035L 0.23 tolerated(0.37) benign(0.001) TCGA-DK-A2I6-01 2 158272436 158272436 G A CYTIP Missense_Mutation p.T278M 0.26 deleterious(0.02) probably_damaging(0.958) TCGA-DK-A2I6-01 2 172305301 172305301 A G DCAF17 Missense_Mutation p.I144M 0.33 deleterious(0) possibly_damaging(0.61) TCGA-DK-A2I6-01 2 176947052 176947052 C T EVX2 Missense_Mutation p.A185T 0.21 tolerated(0.09) benign(0.012) TCGA-DK-A2I6-01 2 179433786 179433786 A G TTN Silent p.D25691D 0.30 TCGA-DK-A2I6-01 2 179475984 179475984 C T TTN Missense_Mutation p.D16958N 0.50 TCGA-DK-A2I6-01 2 179742771 179742771 C T CCDC141 Missense_Mutation p.E607K 0.41 tolerated(0.18) possibly_damaging(0.637) TCGA-DK-A2I6-01 2 182347105 182347105 G A ITGA4 Missense_Mutation p.D287N 0.29 deleterious(0.02) benign(0.187) TCGA-DK-A2I6-01 2 188245285 188245285 T C CALCRL Missense_Mutation p.D106G 0.28 tolerated(0.21) benign(0.006) TCGA-DK-A2I6-01 2 196729415 196729415 G T DNAH7 Missense_Mutation p.H2322N 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 2 196877531 196877531 G A DNAH7 Silent p.A323A 0.12 TCGA-DK-A2I6-01 2 201757014 201757014 T A NIF3L1 Silent p.A116A 0.35 TCGA-DK-A2I6-01 2 219920154 219920154 T G IHH Silent p.T337T 0.44 TCGA-DK-A2I6-01 2 220075494 220075494 T C ABCB6 Missense_Mutation p.K732R 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 2 224782693 224782693 G A WDFY1 Nonsense_Mutation p.Q58* 0.33 TCGA-DK-A2I6-01 2 234580786 234580786 C A UGT1A9 Nonsense_Mutation p.S69* 0.12 TCGA-DK-A2I6-01 2 238283323 238283323 G A COL6A3 Silent p.I1137I 0.38 TCGA-DK-A2I6-01 2 24535188 24535188 G A ITSN2 Missense_Mutation p.A82V 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I6-01 2 27603386 27603386 C T ZNF513 Missense_Mutation p.R3Q 0.42 deleterious(0) benign(0.002) TCGA-DK-A2I6-01 2 32738106 32738106 G A BIRC6 Missense_Mutation p.G3485S 0.11 probably_damaging(0.995) TCGA-DK-A2I6-01 2 32738107 32738107 G T BIRC6 Missense_Mutation p.G3485V 0.10 possibly_damaging(0.904) TCGA-DK-A2I6-01 2 39499674 39499674 G A MAP4K3 Nonsense_Mutation p.R602* 0.32 TCGA-DK-A2I6-01 2 65543912 65543912 G A SPRED2 Missense_Mutation p.H182Y 0.26 tolerated(0.66) benign(0.07) TCGA-DK-A2I6-01 2 70008684 70008684 C T ANXA4 5'UTR 0.48 TCGA-DK-A2I6-01 2 74531720 74531720 T G SLC4A5 Missense_Mutation p.K56T 0.15 tolerated_low_confidence(0.2) benign(0.034) TCGA-DK-A2I6-01 2 74752218 74752218 C T DQX1 Missense_Mutation p.D117N 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-DK-A2I6-01 2 79312628 79312628 A C REG1B Silent p.T141T 0.30 TCGA-DK-A2I6-01 2 80646672 80646672 G A CTNNA2 Silent p.K412K 0.27 TCGA-DK-A2I6-01 2 85852670 85852684 GAAGCCCACTTTCAC - USP39 In_Frame_Del p.P195_K199del 0.11 TCGA-DK-A2I6-01 2 8919881 8919894 TCTGAGTGAAGCTG - KIDINS220 Frame_Shift_Del p.D760Efs*16 0.25 TCGA-DK-A2I6-01 2 90121868 90121868 C T IGKV1D-17 Missense_Mutation p.S29F 0.49 deleterious(0) probably_damaging(0.979) TCGA-DK-A2I6-01 2 96259801 96259801 G C TRIM43 Missense_Mutation p.Q10H 0.52 deleterious(0.02) probably_damaging(0.982) TCGA-DK-A2I6-01 2 98206235 98206235 G A ANKRD36B RNA 0.25 TCGA-DK-A2I6-01 3 101540311 101540311 A G NXPE3 Missense_Mutation p.K398R 0.30 tolerated(0.36) possibly_damaging(0.725) TCGA-DK-A2I6-01 3 108343354 108343354 G A DZIP3 Missense_Mutation p.E147K 0.25 tolerated(0.09) benign(0.112) TCGA-DK-A2I6-01 3 121413222 121413222 G A GOLGB1 Silent p.L2050L 0.70 TCGA-DK-A2I6-01 3 122865069 122865069 C T PDIA5 Missense_Mutation p.L369F 0.13 tolerated(0.07) probably_damaging(0.995) TCGA-DK-A2I6-01 3 13363766 13363766 C T NUP210 Silent p.Q1614Q 0.61 TCGA-DK-A2I6-01 3 151545957 151545957 A G AADAC Silent p.L399L 0.67 TCGA-DK-A2I6-01 3 173996714 173996714 A T NLGN1 Missense_Mutation p.Q308L 0.34 deleterious(0) possibly_damaging(0.818) TCGA-DK-A2I6-01 3 184040229 184040229 C T EIF4G1 Silent p.A540A 0.26 TCGA-DK-A2I6-01 3 184100779 184100779 C G CHRD Intron 0.73 TCGA-DK-A2I6-01 3 27326126 27326126 T C NEK10 Missense_Mutation p.I661V 0.42 tolerated(0.23) benign(0.071) TCGA-DK-A2I6-01 3 36898029 36898029 T C TRANK1 Missense_Mutation p.I1018V 0.54 tolerated(0.11) possibly_damaging(0.835) TCGA-DK-A2I6-01 3 38442474 38442474 C A XYLB Missense_Mutation p.Q511K 0.39 tolerated(0.39) benign(0.009) TCGA-DK-A2I6-01 3 43408465 43408465 T G ANO10 Missense_Mutation p.Q639P 0.22 tolerated(0.12) benign(0.037) TCGA-DK-A2I6-01 3 4709127 4709127 A T ITPR1 Missense_Mutation p.T579S 0.72 deleterious(0) probably_damaging(0.996) TCGA-DK-A2I6-01 3 47162291 47162291 C T SETD2 Missense_Mutation p.G1279R 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 3 48463746 48463746 C T PLXNB1 Silent p.Q471Q 0.23 TCGA-DK-A2I6-01 3 49156582 49156582 G A USP19 5'UTR 0.41 TCGA-DK-A2I6-01 3 49694316 49694316 G A BSN Missense_Mutation p.E2443K 0.50 unknown(0) TCGA-DK-A2I6-01 3 50379288 50379288 C T ZMYND10 Silent p.Q358Q 0.53 TCGA-DK-A2I6-01 3 52404221 52404221 C T DNAH1 Silent p.F2078F 0.32 TCGA-DK-A2I6-01 3 56659005 56659005 G C FAM208A Missense_Mutation p.T1390R 0.09 deleterious(0.02) probably_damaging(0.93) TCGA-DK-A2I6-01 3 58178462 58178462 G A DNASE1L3 Silent p.S290S 0.26 TCGA-DK-A2I6-01 3 97661173 97661173 G A CRYBG3 Missense_Mutation p.G956R 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 4 100237199 100237199 G A ADH1B Silent p.F141F 0.35 TCGA-DK-A2I6-01 4 128930328 128930328 T A C4orf29 Missense_Mutation p.L142M 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A2I6-01 4 144135055 144135055 T G USP38 Missense_Mutation p.D642E 0.31 tolerated(0.54) benign(0.006) TCGA-DK-A2I6-01 4 153573937 153573937 C A TMEM154 Silent p.P69P 0.23 TCGA-DK-A2I6-01 4 159092463 159092463 C T FAM198B Missense_Mutation p.R22Q 0.25 tolerated(0.15) benign(0.417) TCGA-DK-A2I6-01 4 170028077 170028077 G A SH3RF1 Missense_Mutation p.P807S 0.35 tolerated(0.86) probably_damaging(0.999) TCGA-DK-A2I6-01 4 170028181 170028181 G T SH3RF1 Missense_Mutation p.S772Y 0.27 deleterious(0) benign(0.157) TCGA-DK-A2I6-01 4 2927796 2927796 G T ADD1 Silent p.A637A 0.18 TCGA-DK-A2I6-01 4 38776079 38776079 A T TLR10 Missense_Mutation p.I378N 0.37 tolerated(0.09) probably_damaging(0.978) TCGA-DK-A2I6-01 4 38776209 38776209 T G TLR10 Missense_Mutation p.N335H 0.50 deleterious(0.01) possibly_damaging(0.564) TCGA-DK-A2I6-01 4 40146392 40146392 G C N4BP2 Missense_Mutation p.L1705F 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 4 436514 436514 C G ZNF721 Missense_Mutation p.G581A 0.18 deleterious(0.02) probably_damaging(0.966) TCGA-DK-A2I6-01 4 44693709 44693709 G A GUF1 Missense_Mutation p.M502I 0.37 tolerated(0.18) benign(0.006) TCGA-DK-A2I6-01 4 48140938 48140938 G A TEC Missense_Mutation p.S546L 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 4 53278 53278 G T ZNF595 5'UTR 0.09 TCGA-DK-A2I6-01 4 54231440 54231440 G A SCFD2 Silent p.L223L 0.20 TCGA-DK-A2I6-01 4 54967810 54967810 G T GSX2 Silent p.T212T 0.43 TCGA-DK-A2I6-01 4 70361469 70361469 C T UGT2B4 Missense_Mutation p.M37I 0.33 tolerated(0.94) benign(0.006) TCGA-DK-A2I6-01 4 7045505 7045505 G A TADA2B Missense_Mutation p.E67K 0.17 tolerated(0.77) benign(0.063) TCGA-DK-A2I6-01 4 71863897 71863897 G A DCK Missense_Mutation p.E69K 0.43 tolerated(0.11) benign(0.003) TCGA-DK-A2I6-01 4 7780338 7780338 T C AFAP1 Intron 0.29 TCGA-DK-A2I6-01 4 79833000 79833000 C A BMP2K Missense_Mutation p.P1100Q 0.41 deleterious_low_confidence(0) unknown(0) TCGA-DK-A2I6-01 4 80247080 80247080 G T NAA11 5'UTR 0.43 TCGA-DK-A2I6-01 5 110445967 110445967 C T WDR36 Missense_Mutation p.S525F 0.62 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I6-01 5 114916656 114916656 G C TMED7-TICAM2 Missense_Mutation p.L269V 0.14 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-DK-A2I6-01 5 127693083 127693083 T C FBN2 Missense_Mutation p.I853M 0.81 deleterious(0) probably_damaging(0.911) TCGA-DK-A2I6-01 5 128324319 128324319 C G SLC27A6 Missense_Mutation p.Q238E 0.65 deleterious(0.03) benign(0.411) TCGA-DK-A2I6-01 5 132223670 132223670 T C AFF4 Missense_Mutation p.D934G 0.62 deleterious(0.01) probably_damaging(0.992) TCGA-DK-A2I6-01 5 150275116 150275116 G A ZNF300 Missense_Mutation p.S578L 0.69 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A2I6-01 5 176830946 176830946 G A F12 Silent p.A388A 0.50 TCGA-DK-A2I6-01 5 176831565 176831565 G A F12 Silent p.A245A 0.71 TCGA-DK-A2I6-01 5 179696343 179696343 G T MAPK9 Missense_Mutation p.N63K 0.87 deleterious(0) probably_damaging(0.976) TCGA-DK-A2I6-01 5 19473288 19473288 C G CDH18 3'UTR 0.47 TCGA-DK-A2I6-01 5 23526685 23526685 A C PRDM9 Missense_Mutation p.E496D 0.14 tolerated(0.53) possibly_damaging(0.75) TCGA-DK-A2I6-01 5 235398 235398 G C SDHA Missense_Mutation p.V402L 0.23 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-DK-A2I6-01 5 40681893 40681893 C G PTGER4 Silent p.A266A 0.04 TCGA-DK-A2I6-01 5 50687238 50687238 T C ISL1 Missense_Mutation p.L299S 0.31 deleterious(0.04) benign(0.128) TCGA-DK-A2I6-01 5 7861273 7861273 G C FASTKD3 Missense_Mutation p.Q625E 0.29 tolerated(1) benign(0.006) TCGA-DK-A2I6-01 5 82817219 82817219 C G VCAN Missense_Mutation p.Q1032E 0.11 tolerated(0.7) benign(0.004) TCGA-DK-A2I6-01 5 9063097 9063097 C T SEMA5A Missense_Mutation p.R807Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I6-01 6 155619653 155619653 C G TFB1M Missense_Mutation p.E118Q 0.50 tolerated(0.06) possibly_damaging(0.653) TCGA-DK-A2I6-01 6 160560699 160560713 TGCTCTATCAGGGGC - SLC22A1 In_Frame_Del p.L360_L364del 0.44 TCGA-DK-A2I6-01 6 167753797 167753797 A G TTLL2 Missense_Mutation p.S137G 0.16 deleterious(0.04) benign(0.023) TCGA-DK-A2I6-01 6 22297250 22297250 G C PRL 5'UTR 0.36 TCGA-DK-A2I6-01 6 24433445 24433445 G A GPLD1 Silent p.S802S 0.09 TCGA-DK-A2I6-01 6 24454389 24454389 C T GPLD1 Missense_Mutation p.D397N 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A2I6-01 6 24701909 24701909 T C ACOT13 3'UTR 0.32 TCGA-DK-A2I6-01 6 26273432 26273432 G A HIST1H2BI Missense_Mutation p.E77K 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-DK-A2I6-01 6 31668761 31668761 C G ABHD16A Missense_Mutation p.G101R 0.15 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A2I6-01 6 35588041 35588041 G C FKBP5 Missense_Mutation p.I87M 0.49 deleterious(0) probably_damaging(0.985) TCGA-DK-A2I6-01 6 4059021 4059021 C T PRPF4B Silent p.Y931Y 0.16 TCGA-DK-A2I6-01 6 41704585 41704585 C G PGC 3'UTR 0.10 TCGA-DK-A2I6-01 6 41903764 41903764 G T CCND3 Missense_Mutation p.P265T 0.31 tolerated(0.5) benign(0.001) TCGA-DK-A2I6-01 6 41908297 41908297 C G CCND3 Missense_Mutation p.E75D 0.49 tolerated(0.13) benign(0.067) TCGA-DK-A2I6-01 6 42985893 42985893 T G KLHDC3 Missense_Mutation p.F153C 0.63 deleterious(0) probably_damaging(0.999) TCGA-DK-A2I6-01 6 44201158 44201158 G C SLC29A1 Missense_Mutation p.V422L 0.23 deleterious(0.01) probably_damaging(1) TCGA-DK-A2I6-01 6 56458781 56458781 A T DST Missense_Mutation p.L1513I 0.48 benign(0.389) TCGA-DK-A2I6-01 6 7211055 7211055 G A RREB1 Silent p.E148E 0.28 TCGA-DK-A2I6-01 7 105925371 105925371 G C NAMPT 5'UTR 0.30 TCGA-DK-A2I6-01 7 107398668 107398668 G A CBLL1 Missense_Mutation p.R174K 0.24 tolerated(0.08) probably_damaging(0.995) TCGA-DK-A2I6-01 7 126086316 126086316 C T GRM8 Silent p.Q847Q 0.34 TCGA-DK-A2I6-01 7 128486934 128486934 C G FLNC Missense_Mutation p.I1421M 0.35 deleterious(0) possibly_damaging(0.892) TCGA-DK-A2I6-01 7 134643018 134643018 G A CALD1 Missense_Mutation p.E680K 0.54 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 7 138936757 138936757 G C UBN2 Missense_Mutation p.G206A 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A2I6-01 7 1544185 1544185 C T INTS1 5'Flank 0.52 TCGA-DK-A2I6-01 7 157160089 157160089 A G DNAJB6 Silent p.P86P 0.41 TCGA-DK-A2I6-01 7 15725691 15725691 C T MEOX2 Missense_Mutation p.D113N 0.54 tolerated(0.46) benign(0.001) TCGA-DK-A2I6-01 7 27150273 27150273 G A HOXA3 5'UTR 0.30 TCGA-DK-A2I6-01 7 36671706 36671706 A C AOAH Missense_Mutation p.S153A 0.29 tolerated(0.86) benign(0.019) TCGA-DK-A2I6-01 7 48308595 48308595 C T ABCA13 Missense_Mutation p.P675L 0.15 possibly_damaging(0.553) TCGA-DK-A2I6-01 7 63709435 63709435 G A ZNF679 5'UTR 0.39 TCGA-DK-A2I6-01 7 64292295 64292295 T C ZNF138 Silent p.C199C 0.44 TCGA-DK-A2I6-01 7 69364285 69364285 T G AUTS2 Missense_Mutation p.L108R 0.21 deleterious(0) benign(0.361) TCGA-DK-A2I6-01 7 72298686 72298686 C T TYW1B 5'UTR 0.34 TCGA-DK-A2I6-01 7 73097379 73097379 G A DNAJC30 Silent p.V125V 0.39 TCGA-DK-A2I6-01 7 75178216 75178216 A T HIP1 Silent p.A793A 0.29 TCGA-DK-A2I6-01 7 75178225 75178225 A C HIP1 Silent p.T790T 0.30 TCGA-DK-A2I6-01 7 84751131 84751131 C T SEMA3D Missense_Mutation p.S26N 0.40 tolerated(0.3) benign(0.001) TCGA-DK-A2I6-01 7 86554951 86554951 C A KIAA1324L Missense_Mutation p.G431V 0.22 deleterious(0) probably_damaging(0.998) TCGA-DK-A2I6-01 7 99032712 99032712 G A ATP5J2-PTCD1 Nonsense_Mutation p.Q101* 0.53 TCGA-DK-A2I6-01 8 100396448 100396448 T C VPS13B Missense_Mutation p.L946P 0.03 deleterious(0) probably_damaging(0.979) TCGA-DK-A2I6-01 8 100523432 100523432 C T VPS13B Missense_Mutation p.S1467L 0.87 deleterious(0.01) possibly_damaging(0.766) TCGA-DK-A2I6-01 8 105405182 105405182 A C DPYS Missense_Mutation p.F425V 0.12 tolerated(0.1) possibly_damaging(0.799) TCGA-DK-A2I6-01 8 106814151 106814151 C A ZFPM2 Missense_Mutation p.A614D 0.14 tolerated(0.27) benign(0.046) TCGA-DK-A2I6-01 8 41791525 41791525 C T KAT6A Missense_Mutation p.E1405K 0.14 unknown(0) TCGA-DK-A2I6-01 8 72959440 72959440 T C TRPA1 Silent p.V636V 0.18 TCGA-DK-A2I6-01 8 72965004 72965004 T G TRPA1 Intron 0.13 TCGA-DK-A2I6-01 9 116356425 116356425 T C RGS3 Intron 0.23 TCGA-DK-A2I6-01 9 123151529 123151529 G A CDK5RAP2 Silent p.S1889S 0.47 TCGA-DK-A2I6-01 9 123169489 123169489 G A CDK5RAP2 Silent p.F1588F 0.31 TCGA-DK-A2I6-01 9 123170639 123170639 T A CDK5RAP2 Missense_Mutation p.H1571L 0.51 tolerated(0.2) possibly_damaging(0.84) TCGA-DK-A2I6-01 9 125009805 125009805 G A RBM18 Nonsense_Mutation p.Q107* 0.29 TCGA-DK-A2I6-01 9 130147318 130147318 C T GARNL3 Missense_Mutation p.P761L 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A2I6-01 9 131802905 131802905 T C FAM73B Missense_Mutation p.M11T 0.44 deleterious_low_confidence(0.03) benign(0.01) TCGA-DK-A2I6-01 9 134955168 134955168 G A MED27 Nonsense_Mutation p.Q22* 0.57 TCGA-DK-A2I6-01 9 134955169 134955169 G A MED27 Silent p.I21I 0.58 TCGA-DK-A2I6-01 9 19116217 19116217 C T PLIN2 3'UTR 0.37 TCGA-DK-A2I6-01 9 32974519 32974519 G A APTX Missense_Mutation p.P271S 0.42 deleterious(0.05) possibly_damaging(0.883) TCGA-DK-A2I6-01 9 33366702 33366702 C A NFX1 Missense_Mutation p.Q1039K 0.36 deleterious(0.01) benign(0.439) TCGA-DK-A2I6-01 9 86153040 86153040 A G FRMD3 Missense_Mutation p.I36T 0.35 deleterious(0) benign(0.305) TCGA-DK-A2I6-01 9 87338604 87338604 A T NTRK2 Missense_Mutation p.N234Y 0.16 tolerated(0.07) probably_damaging(0.945) TCGA-DK-A2I6-01 X 101381895 101381895 A C TCEAL2 Missense_Mutation p.E31D 0.07 tolerated(0.2) benign(0.217) TCGA-DK-A2I6-01 X 105011334 105011334 C A IL1RAPL2 Missense_Mutation p.L581I 0.11 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DK-A2I6-01 X 119005263 119005263 G A RNF113A Missense_Mutation p.S105L 0.86 deleterious(0) possibly_damaging(0.769) TCGA-DK-A2I6-01 X 129629498 129629498 G A RP1-274L7.1 Intron 0.83 TCGA-DK-A2I6-01 X 133979245 133979245 T C FAM122C Missense_Mutation p.M86T 0.80 tolerated(0.08) benign(0.402) TCGA-DK-A2I6-01 X 135431715 135431715 G C GPR112 Silent p.G1950G 0.82 TCGA-DK-A2I6-01 X 137717743 137717743 A G FGF13 Missense_Mutation p.I169T 0.90 deleterious(0.04) benign(0.18) TCGA-DK-A2I6-01 X 147014278 147014278 A G FMR1 Silent p.L292L 0.74 TCGA-DK-A2I6-01 X 153043511 153043511 C T PLXNB3 Silent p.F1813F 0.83 TCGA-DK-A2I6-01 X 19014182 19014182 C G GPR64 Silent p.L901L 0.73 TCGA-DK-A2I6-01 X 19389508 19389508 C T MAP3K15 Silent p.S1083S 0.76 TCGA-DK-A2I6-01 X 23700610 23700610 C G PRDX4 Missense_Mutation p.Q233E 0.86 tolerated(0.09) benign(0.268) TCGA-DK-A2I6-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.73 TCGA-DK-A2I6-01 X 46529104 46529104 G A SLC9A7 Missense_Mutation p.S244L 0.75 deleterious(0.04) benign(0.216) TCGA-DK-A2I6-01 X 9900215 9900215 A G SHROOM2 Silent p.R964R 0.61 TCGA-DK-A2I6-01 X 99919817 99919817 C A SRPX2 Silent p.T134T 0.19 TCGA-DK-A3IK-01 10 100219428 100219428 C T HPSE2 Missense_Mutation p.R561H 0.43 deleterious(0) possibly_damaging(0.891) TCGA-DK-A3IK-01 10 102289609 102289609 C G NDUFB8 5'UTR 0.23 TCGA-DK-A3IK-01 10 104129518 104129518 G C GBF1 Missense_Mutation p.E1066D 0.29 tolerated(0.16) benign(0.188) TCGA-DK-A3IK-01 10 104142018 104142018 C T GBF1 Silent p.I1835I 0.21 TCGA-DK-A3IK-01 10 105128238 105128238 G T TAF5 Silent p.P164P 0.18 TCGA-DK-A3IK-01 10 12148334 12148334 G T DHTKD1 Missense_Mutation p.E662D 0.04 deleterious(0.01) possibly_damaging(0.658) TCGA-DK-A3IK-01 10 17083214 17083214 C T CUBN Missense_Mutation p.E1279K 0.13 tolerated(0.19) benign(0.066) TCGA-DK-A3IK-01 10 17107557 17107557 A T CUBN Missense_Mutation p.L1030H 0.14 deleterious(0) possibly_damaging(0.805) TCGA-DK-A3IK-01 10 70645483 70645483 G A STOX1 Missense_Mutation p.R644Q 0.23 tolerated(1) benign(0.001) TCGA-DK-A3IK-01 11 122756667 122756667 G A C11orf63 Missense_Mutation p.R37Q 0.27 tolerated(0.65) benign(0.002) TCGA-DK-A3IK-01 11 123753889 123753889 G C TMEM225 Missense_Mutation p.L212V 0.15 tolerated(0.3) benign(0.001) TCGA-DK-A3IK-01 11 124763844 124763844 G C ROBO4 Silent p.A472A 0.19 TCGA-DK-A3IK-01 11 126314964 126314964 C T KIRREL3 Missense_Mutation p.V388M 0.20 deleterious(0) probably_damaging(0.987) TCGA-DK-A3IK-01 11 128856559 128856559 C T ARHGAP32 Missense_Mutation p.E421K 0.21 deleterious(0) possibly_damaging(0.892) TCGA-DK-A3IK-01 11 130341218 130341218 G C ADAMTS15 Missense_Mutation p.G673A 0.10 deleterious(0.04) possibly_damaging(0.606) TCGA-DK-A3IK-01 11 133790010 133790010 G C IGSF9B Missense_Mutation p.L1204V 0.21 deleterious_low_confidence(0.02) benign(0.059) TCGA-DK-A3IK-01 11 3125474 3125474 G C OSBPL5 Missense_Mutation p.S398C 0.26 deleterious(0) probably_damaging(0.981) TCGA-DK-A3IK-01 11 55702943 55702943 C G OR5I1 Missense_Mutation p.D312H 0.12 tolerated(0.54) benign(0.037) TCGA-DK-A3IK-01 11 56085843 56085843 G A OR8K3 Missense_Mutation p.A21T 0.31 deleterious_low_confidence(0.02) benign(0.003) TCGA-DK-A3IK-01 11 58125948 58125948 G T OR5B17 Missense_Mutation p.L199I 0.07 tolerated_low_confidence(0.3) benign(0.062) TCGA-DK-A3IK-01 11 67267792 67267792 C G PITPNM1 Missense_Mutation p.E247D 0.17 deleterious(0) probably_damaging(0.938) TCGA-DK-A3IK-01 11 68525172 68525172 C G CPT1A Silent p.L754L 0.18 TCGA-DK-A3IK-01 11 73021688 73021688 C T ARHGEF17 Nonsense_Mutation p.R669* 0.08 TCGA-DK-A3IK-01 12 102158444 102158444 G A GNPTAB Nonsense_Mutation p.Q751* 0.16 TCGA-DK-A3IK-01 12 105440691 105440691 C T ALDH1L2 Silent p.K581K 0.17 TCGA-DK-A3IK-01 12 110826320 110826320 G C ANAPC7 Missense_Mutation p.L207V 0.11 tolerated(0.28) benign(0.003) TCGA-DK-A3IK-01 12 114836395 114836395 G A TBX5 Silent p.L165L 0.13 TCGA-DK-A3IK-01 12 118590040 118590040 C G TAOK3 Missense_Mutation p.E843Q 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-DK-A3IK-01 12 118599765 118599765 G T TAOK3 Missense_Mutation p.T656N 0.21 deleterious(0) possibly_damaging(0.474) TCGA-DK-A3IK-01 12 120597747 120597747 G C GCN1L1 Missense_Mutation p.I877M 0.12 possibly_damaging(0.591) TCGA-DK-A3IK-01 12 123297940 123297940 G A CCDC62 Missense_Mutation p.E659K 0.14 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-DK-A3IK-01 12 133218913 133218913 G A POLE Missense_Mutation p.R1675C 0.35 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 12 1702939 1702939 G A FBXL14 Silent p.S98S 0.16 TCGA-DK-A3IK-01 12 21033839 21033839 C T SLCO1B3 Missense_Mutation p.S461L 0.18 deleterious(0.02) possibly_damaging(0.766) TCGA-DK-A3IK-01 12 26275715 26275715 C T BHLHE41 Missense_Mutation p.E245K 0.32 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IK-01 12 47629841 47629841 G A PCED1B Missense_Mutation p.R332Q 0.17 tolerated(0.38) benign(0) TCGA-DK-A3IK-01 12 49391444 49391444 C G DDN Missense_Mutation p.W405C 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A3IK-01 12 56094913 56094913 C G ITGA7 Missense_Mutation p.R147T 0.05 deleterious(0) probably_damaging(0.944) TCGA-DK-A3IK-01 12 6634839 6634839 C G NCAPD2 Missense_Mutation p.L769V 0.37 tolerated(0.25) benign(0.005) TCGA-DK-A3IK-01 12 66357034 66357034 G A HMGA2 Missense_Mutation p.E98K 0.25 tolerated(0.24) unknown(0) TCGA-DK-A3IK-01 12 6981672 6981672 C A SPSB2 Missense_Mutation p.G132C 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 12 71286462 71286462 C A PTPRR Silent p.V118V 0.13 TCGA-DK-A3IK-01 12 75905364 75905364 G A KRR1 Missense_Mutation p.S5L 0.14 tolerated_low_confidence(0.11) benign(0.001) TCGA-DK-A3IK-01 12 89743323 89743341 TTGCCCCGGGCTTCATCTG - DUSP6 Splice_Site p.X280_splice 0.23 TCGA-DK-A3IK-01 13 114530137 114530137 T C GAS6 Missense_Mutation p.I437V 0.24 tolerated(0.09) probably_damaging(0.933) TCGA-DK-A3IK-01 13 49760119 49760119 A C FNDC3A Missense_Mutation p.E546A 0.19 deleterious(0) benign(0.072) TCGA-DK-A3IK-01 14 105413989 105413989 G A AHNAK2 Missense_Mutation p.A2600V 0.16 benign(0.008) TCGA-DK-A3IK-01 14 106174360 106174360 C G IGHA1 Silent p.A143A 0.21 TCGA-DK-A3IK-01 14 106208421 106208421 C G IGHG1 Missense_Mutation p.W160S 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 14 24584853 24584853 C G DCAF11 Missense_Mutation p.S17C 0.34 tolerated_low_confidence(0.14) unknown(0) TCGA-DK-A3IK-01 14 31085657 31085657 G C G2E3 Missense_Mutation p.E680Q 0.31 tolerated(0.52) benign(0.029) TCGA-DK-A3IK-01 14 42361055 42361055 T C LRFN5 Missense_Mutation p.V663A 0.27 tolerated_low_confidence(0.32) benign(0) TCGA-DK-A3IK-01 14 55255676 55255676 G C SAMD4A 3'UTR 0.09 TCGA-DK-A3IK-01 14 88892876 88892876 C G SPATA7 Missense_Mutation p.L225V 0.17 deleterious(0) probably_damaging(0.966) TCGA-DK-A3IK-01 14 91976014 91976014 G A SMEK1 5'UTR 0.15 TCGA-DK-A3IK-01 14 93712182 93712182 C T BTBD7 Missense_Mutation p.E858K 0.23 tolerated_low_confidence(0.29) benign(0.007) TCGA-DK-A3IK-01 14 96784135 96784135 G C ATG2B Missense_Mutation p.F979L 0.28 tolerated(0.69) benign(0) TCGA-DK-A3IK-01 15 27184585 27184585 T C GABRA5 Intron 0.43 TCGA-DK-A3IK-01 15 34646669 34646669 C G NUTM1 Silent p.A338A 0.16 TCGA-DK-A3IK-01 15 64454323 64454323 C A PPIB Missense_Mutation p.D56Y 0.22 deleterious(0.05) possibly_damaging(0.547) TCGA-DK-A3IK-01 15 89182733 89182733 G C ISG20 Missense_Mutation p.E46Q 0.12 tolerated(0.1) benign(0.093) TCGA-DK-A3IK-01 15 91474717 91474717 C G HDDC3 3'UTR 0.22 TCGA-DK-A3IK-01 15 91475081 91475081 C A HDDC3 Nonsense_Mutation p.E88* 0.13 TCGA-DK-A3IK-01 16 14345773 14345773 G A MKL2 Missense_Mutation p.A770T 0.18 tolerated(0.25) benign(0.007) TCGA-DK-A3IK-01 16 27789971 27789971 G C KIAA0556 3'UTR 0.09 TCGA-DK-A3IK-01 16 28914646 28914646 G A ATP2A1 Missense_Mutation p.M955I 0.06 tolerated(0.22) benign(0.031) TCGA-DK-A3IK-01 16 29708422 29708422 G A QPRT Missense_Mutation p.V219I 0.12 tolerated(0.77) benign(0.009) TCGA-DK-A3IK-01 16 29855914 29855914 G T MVP Missense_Mutation p.V579L 0.60 deleterious(0.01) probably_damaging(0.989) TCGA-DK-A3IK-01 16 30992428 30992428 G T SETD1A Missense_Mutation p.W1580L 0.13 unknown(0) TCGA-DK-A3IK-01 16 716521 716521 G T WDR90 Missense_Mutation p.V1603F 0.27 deleterious(0) possibly_damaging(0.516) TCGA-DK-A3IK-01 16 78466481 78466481 C T WWOX Silent p.S296S 0.20 TCGA-DK-A3IK-01 16 89260217 89260217 G C CDH15 Missense_Mutation p.G683R 0.10 tolerated(0.08) benign(0.202) TCGA-DK-A3IK-01 16 90001364 90001364 G A TUBB3 Missense_Mutation p.V169I 0.22 tolerated_low_confidence(0.18) benign(0.164) TCGA-DK-A3IK-01 17 10538231 10538231 C T MYH3 Missense_Mutation p.D1428N 0.59 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IK-01 17 16723373 16723373 C T AC022596.6 RNA 0.24 TCGA-DK-A3IK-01 17 30205295 30205295 G C UTP6 Missense_Mutation p.L367V 0.19 deleterious(0.05) possibly_damaging(0.831) TCGA-DK-A3IK-01 17 34234251 34234251 C A AC015849.16 RNA 0.23 TCGA-DK-A3IK-01 17 4578480 4578480 G A PELP1 Missense_Mutation p.R390W 0.12 probably_damaging(0.997) TCGA-DK-A3IK-01 17 4642109 4642109 C G CXCL16 Silent p.L81L 0.23 TCGA-DK-A3IK-01 17 54431282 54431282 C G ANKFN1 Missense_Mutation p.P162R 0.22 tolerated(0.33) benign(0.079) TCGA-DK-A3IK-01 17 7077715 7077715 C G ASGR1 Missense_Mutation p.Q140H 0.40 deleterious(0.04) benign(0.429) TCGA-DK-A3IK-01 17 72518869 72518869 C A CD300LB 3'UTR 0.19 TCGA-DK-A3IK-01 17 73486837 73486837 C T KIAA0195 Nonsense_Mutation p.Q376* 0.20 TCGA-DK-A3IK-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.54 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 17 79650829 79650829 C G ARL16 Missense_Mutation p.L9F 0.11 deleterious_low_confidence(0) benign(0.032) TCGA-DK-A3IK-01 17 80789199 80789199 C T ZNF750 Missense_Mutation p.E378K 0.17 deleterious(0.01) benign(0.32) TCGA-DK-A3IK-01 17 80887006 80887006 G T TBCD Missense_Mutation p.C904F 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A3IK-01 18 21519274 21519274 C T LAMA3 Missense_Mutation p.H2984Y 0.28 benign(0.308) TCGA-DK-A3IK-01 19 11660204 11660204 G A CNN1 Missense_Mutation p.D190N 0.18 deleterious(0.04) probably_damaging(0.965) TCGA-DK-A3IK-01 19 13035066 13035066 C G FARSA Missense_Mutation p.W429C 0.17 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IK-01 19 1489889 1489889 G C PCSK4 Missense_Mutation p.P66R 0.20 tolerated(0.1) benign(0.215) TCGA-DK-A3IK-01 19 1584563 1584563 C T MBD3 Silent p.Q128Q 0.20 TCGA-DK-A3IK-01 19 18902016 18902016 C A COMP Missense_Mutation p.Q21H 0.45 tolerated_low_confidence(0.06) probably_damaging(0.965) TCGA-DK-A3IK-01 19 20728275 20728275 G A ZNF737 Missense_Mutation p.T245I 0.10 tolerated(0.07) benign(0.115) TCGA-DK-A3IK-01 19 20828521 20828521 C A ZNF626 Missense_Mutation p.M65I 0.06 tolerated(0.16) benign(0.023) TCGA-DK-A3IK-01 19 20829085 20829085 C A ZNF626 Missense_Mutation p.G44C 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 19 35646412 35646412 C T FXYD5 5'UTR 0.17 TCGA-DK-A3IK-01 19 36212397 36212397 G C KMT2B Missense_Mutation p.K716N 0.15 benign(0.014) TCGA-DK-A3IK-01 19 37733545 37733545 G C ZNF383 Missense_Mutation p.G136A 0.17 tolerated(0.32) benign(0.06) TCGA-DK-A3IK-01 19 39521746 39521746 C G FBXO27 Missense_Mutation p.Q165H 0.17 deleterious(0) probably_damaging(0.93) TCGA-DK-A3IK-01 19 40895437 40895437 C T HIPK4 Missense_Mutation p.A125T 0.16 tolerated(0.17) possibly_damaging(0.871) TCGA-DK-A3IK-01 19 41386396 41386396 G T CYP2A7 Silent p.R161R 0.14 TCGA-DK-A3IK-01 19 4363777 4363777 C G SH3GL1 Missense_Mutation p.E188D 0.18 tolerated(0.14) benign(0.183) TCGA-DK-A3IK-01 19 44223733 44223733 G A IRGC Silent p.E341E 0.12 TCGA-DK-A3IK-01 19 44739769 44739769 C T ZNF227 Missense_Mutation p.R396C 0.30 tolerated(0.1) probably_damaging(1) TCGA-DK-A3IK-01 19 44832239 44832239 C G ZNF112 Missense_Mutation p.E697Q 0.14 tolerated(0.11) possibly_damaging(0.617) TCGA-DK-A3IK-01 19 46216736 46216736 G A FBXO46 Silent p.L6L 0.06 TCGA-DK-A3IK-01 19 47865903 47865903 C G DHX34 Missense_Mutation p.P516A 0.21 tolerated(0.16) benign(0.073) TCGA-DK-A3IK-01 19 50302585 50302585 G C AP2A1 Missense_Mutation p.E323Q 0.27 deleterious(0.02) benign(0.203) TCGA-DK-A3IK-01 19 55086317 55086317 G T LILRA2 Nonsense_Mutation p.G158* 0.12 TCGA-DK-A3IK-01 19 55106715 55106715 C G LILRA1 Nonsense_Mutation p.S170* 0.14 TCGA-DK-A3IK-01 19 55341573 55341573 C G KIR3DL1 Missense_Mutation p.P393R 0.16 tolerated(0.06) benign(0.175) TCGA-DK-A3IK-01 19 55653248 55653248 C G TNNT1 Missense_Mutation p.E57Q 0.14 deleterious(0) unknown(0) TCGA-DK-A3IK-01 19 5824095 5824095 C A NRTN 5'UTR 0.15 TCGA-DK-A3IK-01 19 6230661 6230661 C A MLLT1 Missense_Mutation p.V114L 0.37 deleterious(0.01) benign(0.363) TCGA-DK-A3IK-01 19 648951 648951 C A RNF126 Missense_Mutation p.G201C 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 1 112309338 112309338 G A DDX20 Silent p.L764L 0.09 TCGA-DK-A3IK-01 1 114680320 114680320 G A SYT6 Silent p.L205L 0.16 TCGA-DK-A3IK-01 1 1221484 1221484 G A SCNN1D Missense_Mutation p.R246H 0.13 deleterious(0.05) possibly_damaging(0.616) TCGA-DK-A3IK-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.50 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-DK-A3IK-01 1 150192971 150192971 G C ANP32E 3'UTR 0.13 TCGA-DK-A3IK-01 1 153719548 153719548 T C INTS3 Splice_Site p.X144_splice 0.59 TCGA-DK-A3IK-01 1 156640211 156640211 C G NES Missense_Mutation p.G1257R 0.10 tolerated(0.12) benign(0.03) TCGA-DK-A3IK-01 1 157489551 157489551 G C FCRL5 Missense_Mutation p.P881R 0.12 deleterious(0.04) benign(0.068) TCGA-DK-A3IK-01 1 168169157 168169157 T C TIPRL Missense_Mutation p.L231P 0.79 deleterious(0.05) benign(0.006) TCGA-DK-A3IK-01 1 168215873 168215873 C G SFT2D2 3'UTR 0.10 TCGA-DK-A3IK-01 1 173834028 173834028 G A ZBTB37 5'Flank 0.06 TCGA-DK-A3IK-01 1 17395694 17395694 C T PADI2 Missense_Mutation p.E615K 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 1 17682587 17682587 G A PADI4 Missense_Mutation p.E474K 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 1 184777366 184777366 G C FAM129A Missense_Mutation p.L393V 0.72 tolerated(0.2) benign(0.376) TCGA-DK-A3IK-01 1 206318358 206318358 G A CTSE Missense_Mutation p.R39Q 0.25 tolerated(0.43) benign(0.007) TCGA-DK-A3IK-01 1 22074693 22074693 C G USP48 Missense_Mutation p.K282N 0.13 tolerated(0.11) possibly_damaging(0.449) TCGA-DK-A3IK-01 1 23688971 23688971 C G ZNF436 Missense_Mutation p.G302R 0.16 deleterious(0.02) possibly_damaging(0.833) TCGA-DK-A3IK-01 1 23763473 23763473 G C ASAP3 Silent p.R469R 0.16 TCGA-DK-A3IK-01 1 27107008 27107008 C T ARID1A Nonsense_Mutation p.Q2207* 0.47 TCGA-DK-A3IK-01 1 35452652 35452652 T C ZMYM6 3'UTR 0.10 TCGA-DK-A3IK-01 1 36807476 36807476 C A STK40 Silent p.R396R 0.10 TCGA-DK-A3IK-01 1 51761767 51761767 C T TTC39A Missense_Mutation p.E381K 0.73 tolerated(0.81) benign(0.329) TCGA-DK-A3IK-01 1 52821911 52821911 C A CC2D1B Missense_Mutation p.Q673H 0.20 deleterious(0.05) possibly_damaging(0.897) TCGA-DK-A3IK-01 1 6214906 6214906 C T CHD5 Missense_Mutation p.V187I 0.58 tolerated(0.47) benign(0.172) TCGA-DK-A3IK-01 1 70509735 70509735 G C LRRC7 Missense_Mutation p.Q1318H 0.18 tolerated(0.12) probably_damaging(0.965) TCGA-DK-A3IK-01 20 13074186 13074186 G T SPTLC3 Missense_Mutation p.R263L 0.07 deleterious(0) probably_damaging(0.992) TCGA-DK-A3IK-01 20 278815 278815 G C ZCCHC3 Missense_Mutation p.M196I 0.13 tolerated(0.14) benign(0.108) TCGA-DK-A3IK-01 20 32264765 32264765 C G E2F1 Missense_Mutation p.G363R 0.22 deleterious(0.05) benign(0.439) TCGA-DK-A3IK-01 20 35068239 35068239 G A DLGAP4 Missense_Mutation p.D442N 0.18 tolerated(0.68) benign(0.014) TCGA-DK-A3IK-01 20 35383166 35383166 C G DSN1 Missense_Mutation p.G321R 0.12 deleterious(0.02) possibly_damaging(0.663) TCGA-DK-A3IK-01 20 35865107 35865107 C G RPN2 Silent p.V626V 0.11 TCGA-DK-A3IK-01 20 36572409 36572409 C T VSTM2L Silent p.I123I 0.11 TCGA-DK-A3IK-01 20 3846784 3846784 G A MAVS Missense_Mutation p.R538H 0.17 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IK-01 20 58322813 58322813 C T PHACTR3 Missense_Mutation p.A94V 0.18 tolerated(0.3) possibly_damaging(0.744) TCGA-DK-A3IK-01 20 61513532 61513532 C A DIDO1 Missense_Mutation p.G1259V 0.19 benign(0.357) TCGA-DK-A3IK-01 20 62895852 62895854 CTT - PCMTD2 In_Frame_Del p.F128del 0.08 TCGA-DK-A3IK-01 21 31852400 31852400 C T KRTAP19-1 Silent p.S79S 0.11 TCGA-DK-A3IK-01 21 34861116 34861116 C A DNAJC28 Missense_Mutation p.K195N 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 21 37408469 37408469 C G SETD4 Missense_Mutation p.K423N 0.23 tolerated(0.22) benign(0.042) TCGA-DK-A3IK-01 21 43854960 43854960 A T UBASH3A Missense_Mutation p.D430V 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 21 46021232 46021232 C G KRTAP10-7 Silent p.V237V 0.12 TCGA-DK-A3IK-01 21 47847581 47847581 G A PCNT Missense_Mutation p.V2456I 0.17 benign(0.417) TCGA-DK-A3IK-01 22 20074017 20074017 G C DGCR8 Missense_Mutation p.E177D 0.12 tolerated_low_confidence(0.3) benign(0.001) TCGA-DK-A3IK-01 22 29628348 29628348 C A EMID1 Silent p.P260P 0.25 TCGA-DK-A3IK-01 22 35719129 35719129 C A TOM1 Missense_Mutation p.P109T 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 2 10186443 10186443 G T KLF11 Missense_Mutation p.R70I 0.18 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IK-01 2 112779916 112779916 G A MERTK Missense_Mutation p.D811N 0.25 deleterious(0) possibly_damaging(0.836) TCGA-DK-A3IK-01 2 118865930 118865930 G C INSIG2 3'UTR 0.28 TCGA-DK-A3IK-01 2 16747025 16747025 A G FAM49A Silent p.P27P 0.09 TCGA-DK-A3IK-01 2 231081529 231081529 T C SP110 Silent p.L38L 0.19 TCGA-DK-A3IK-01 2 234213 234213 G C SH3YL1 Silent p.G117G 0.10 TCGA-DK-A3IK-01 2 234581244 234581244 C T UGT1A9 Missense_Mutation p.R222C 0.27 tolerated(0.18) possibly_damaging(0.505) TCGA-DK-A3IK-01 2 234602440 234602440 C T UGT1A6 Missense_Mutation p.P264S 0.23 deleterious(0.02) probably_damaging(1) TCGA-DK-A3IK-01 2 234761219 234761219 C T HJURP Missense_Mutation p.E78K 0.24 tolerated(0.11) benign(0.091) TCGA-DK-A3IK-01 2 27800283 27800283 G A C2orf16 Missense_Mutation p.E282K 0.31 tolerated(0.41) benign(0.269) TCGA-DK-A3IK-01 2 37035743 37035743 G C VIT Missense_Mutation p.L506F 0.13 tolerated(0.28) benign(0.012) TCGA-DK-A3IK-01 2 54883084 54883084 A T SPTBN1 Missense_Mutation p.R1999W 0.12 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IK-01 2 74659756 74659756 C A RTKN Missense_Mutation p.R50L 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 2 98340715 98340715 C T ZAP70 Silent p.A72A 0.07 TCGA-DK-A3IK-01 2 99993068 99993068 G C EIF5B Missense_Mutation p.R604T 0.20 benign(0.029) TCGA-DK-A3IK-01 3 155215191 155215191 C T PLCH1 Silent p.R592R 0.15 TCGA-DK-A3IK-01 3 16450896 16450896 C G RFTN1 Missense_Mutation p.E143Q 0.15 tolerated(0.08) possibly_damaging(0.672) TCGA-DK-A3IK-01 3 179109794 179109794 G C MFN1 Missense_Mutation p.E725Q 0.05 tolerated(0.19) benign(0.032) TCGA-DK-A3IK-01 3 184714261 184714261 G C VPS8 Missense_Mutation p.E1270Q 0.08 tolerated(0.26) benign(0.01) TCGA-DK-A3IK-01 3 195610067 195610067 G A TNK2 Silent p.I253I 0.15 TCGA-DK-A3IK-01 3 21552474 21552474 C G ZNF385D Missense_Mutation p.K106N 0.21 deleterious(0) probably_damaging(0.95) TCGA-DK-A3IK-01 3 33481398 33481398 C A UBP1 5'UTR 0.33 TCGA-DK-A3IK-01 3 39225689 39225689 G A XIRP1 Silent p.L1750L 0.17 TCGA-DK-A3IK-01 3 45800488 45800488 G A SLC6A20 Silent p.D587D 0.06 TCGA-DK-A3IK-01 3 93714777 93714777 G T ARL13B Missense_Mutation p.G40V 0.17 tolerated(0.09) possibly_damaging(0.627) TCGA-DK-A3IK-01 4 123255651 123255651 G C KIAA1109 Missense_Mutation p.Q3933H 0.23 benign(0) TCGA-DK-A3IK-01 4 129778586 129778586 G T JADE1 Nonsense_Mutation p.E320* 0.21 TCGA-DK-A3IK-01 4 141888843 141888843 G T RNF150 Silent p.S223S 0.15 TCGA-DK-A3IK-01 4 158281083 158281083 C T GRIA2 Silent p.T693T 0.22 TCGA-DK-A3IK-01 4 72400084 72400084 C T SLC4A4 Silent p.N807N 0.11 TCGA-DK-A3IK-01 4 72412136 72412136 C T SLC4A4 Missense_Mutation p.L838F 0.14 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IK-01 4 89385092 89385092 G T HERC5 Silent p.V289V 0.21 TCGA-DK-A3IK-01 5 102612271 102612271 G A C5orf30 3'UTR 0.28 TCGA-DK-A3IK-01 5 125801109 125801109 C G GRAMD3 Intron 0.13 TCGA-DK-A3IK-01 5 130987673 130987673 G C FNIP1 Missense_Mutation p.P1043R 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 5 13719198 13719198 G A DNAH5 Missense_Mutation p.L4098F 0.09 possibly_damaging(0.849) TCGA-DK-A3IK-01 5 141244926 141244926 C T PCDH1 Missense_Mutation p.E324K 0.14 tolerated(0.21) benign(0.323) TCGA-DK-A3IK-01 5 150889707 150889707 G A FAT2 Silent p.F3978F 0.29 TCGA-DK-A3IK-01 5 176308338 176308338 C G HK3 Silent p.V864V 0.12 TCGA-DK-A3IK-01 5 31472255 31472255 A G DROSHA Missense_Mutation p.I719T 0.21 deleterious(0) benign(0.014) TCGA-DK-A3IK-01 5 52780943 52780943 G C FST Missense_Mutation p.D280H 0.32 tolerated(0.06) possibly_damaging(0.777) TCGA-DK-A3IK-01 5 65290597 65290597 T C ERBB2IP Missense_Mutation p.L71S 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A3IK-01 6 132207839 132207839 G A ENPP1 Missense_Mutation p.R861K 0.27 deleterious(0.03) benign(0.181) TCGA-DK-A3IK-01 6 138539184 138539184 G C PBOV1 Missense_Mutation p.L117V 0.21 deleterious_low_confidence(0) unknown(0) TCGA-DK-A3IK-01 6 1390493 1390493 C T FOXF2 Missense_Mutation p.S104L 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IK-01 6 160210477 160210477 G A TCP1 Silent p.F8F 0.15 TCGA-DK-A3IK-01 6 165746546 165746546 C T PDE10A Missense_Mutation p.V780M 0.15 tolerated_low_confidence(0.24) benign(0.058) TCGA-DK-A3IK-01 6 168272964 168272964 C G MLLT4 Nonsense_Mutation p.S162* 0.17 TCGA-DK-A3IK-01 6 18212781 18212781 G A KDM1B Silent p.L411L 0.08 TCGA-DK-A3IK-01 6 29054200 29054200 G - OR2B3 Frame_Shift_Del p.L276Sfs*10 0.13 TCGA-DK-A3IK-01 6 35262967 35262967 C T ZNF76 Missense_Mutation p.A552V 0.28 tolerated(0.1) benign(0.041) TCGA-DK-A3IK-01 6 35716570 35716570 C G ARMC12 Missense_Mutation p.L343V 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IK-01 6 3850302 3850302 G T FAM50B Missense_Mutation p.R86L 0.70 tolerated(0.1) benign(0.023) TCGA-DK-A3IK-01 6 41051837 41051837 C T NFYA Missense_Mutation p.S72L 0.14 deleterious(0) unknown(0) TCGA-DK-A3IK-01 6 52659018 52659018 G C GSTA1 Missense_Mutation p.L107V 0.18 tolerated(0.08) benign(0.004) TCGA-DK-A3IK-01 6 52701126 52701126 A C GSTA5 Missense_Mutation p.I60M 0.14 tolerated(0.2) possibly_damaging(0.762) TCGA-DK-A3IK-01 6 54173466 54173466 A C TINAG Missense_Mutation p.T40P 0.31 tolerated(0.12) benign(0.265) TCGA-DK-A3IK-01 6 88853516 88853516 C G CNR1 3'UTR 0.21 TCGA-DK-A3IK-01 7 12668812 12668812 C G SCIN Silent p.L428L 0.19 TCGA-DK-A3IK-01 7 147600711 147600711 G A CNTNAP2 Nonsense_Mutation p.W718* 0.16 TCGA-DK-A3IK-01 7 149489422 149489422 G A SSPO RNA 0.35 TCGA-DK-A3IK-01 7 157000422 157000422 G C UBE3C Missense_Mutation p.M534I 0.14 tolerated(0.35) benign(0.002) TCGA-DK-A3IK-01 7 2687635 2687635 C G TTYH3 Missense_Mutation p.I223M 0.17 deleterious(0) probably_damaging(0.976) TCGA-DK-A3IK-01 7 39612143 39612143 G C YAE1D1 Missense_Mutation p.K173N 0.10 tolerated(0.27) benign(0.002) TCGA-DK-A3IK-01 7 56082826 56082826 C T PSPH Missense_Mutation p.E154K 0.15 tolerated(0.28) benign(0.006) TCGA-DK-A3IK-01 7 6624725 6624725 G C ZDHHC4 Missense_Mutation p.R192T 0.17 deleterious(0) possibly_damaging(0.872) TCGA-DK-A3IK-01 7 84671545 84671545 G C SEMA3D Silent p.A306A 0.47 TCGA-DK-A3IK-01 7 99022928 99022928 C G ATP5J2-PTCD1 Missense_Mutation p.K458N 0.23 tolerated(0.27) benign(0.021) TCGA-DK-A3IK-01 7 99220228 99220228 G C ZSCAN25 Missense_Mutation p.E216Q 0.25 tolerated(0.1) possibly_damaging(0.575) TCGA-DK-A3IK-01 7 99227017 99227017 G A ZSCAN25 Missense_Mutation p.E337K 0.28 tolerated(0.58) benign(0.015) TCGA-DK-A3IK-01 7 99227062 99227062 G T ZSCAN25 Nonsense_Mutation p.E352* 0.22 TCGA-DK-A3IK-01 8 101078419 101078419 A C RGS22 Missense_Mutation p.S234A 0.10 tolerated(0.29) benign(0.021) TCGA-DK-A3IK-01 8 101721413 101721413 A G PABPC1 Silent p.I428I 0.15 TCGA-DK-A3IK-01 8 106813404 106813404 G A ZFPM2 Missense_Mutation p.C365Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IK-01 8 110575628 110575628 C G EBAG9 Intron 0.62 TCGA-DK-A3IK-01 8 113358438 113358438 C G CSMD3 Missense_Mutation p.Q2110H 0.04 deleterious(0.01) benign(0.022) TCGA-DK-A3IK-01 8 123963985 123963985 G C ZHX2 Missense_Mutation p.E79Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IK-01 8 131848566 131848566 C T ADCY8 Missense_Mutation p.A878T 0.11 tolerated(0.6) benign(0.004) TCGA-DK-A3IK-01 8 143993439 143993439 C G CYP11B2 Missense_Mutation p.R490T 0.08 tolerated(0.27) benign(0.01) TCGA-DK-A3IK-01 8 145665527 145665527 C T TONSL Missense_Mutation p.E453K 0.24 tolerated(0.18) benign(0.011) TCGA-DK-A3IK-01 8 42586933 42586933 G T CHRNB3 Silent p.P161P 0.07 TCGA-DK-A3IK-01 8 70540100 70540100 A T SULF1 Missense_Mutation p.S681C 0.27 deleterious(0.02) possibly_damaging(0.541) TCGA-DK-A3IK-01 8 72755904 72755904 G A RP11-383H13.1 Missense_Mutation p.V90I 0.20 unknown(0) TCGA-DK-A3IK-01 8 95186397 95186397 G A CDH17 Silent p.P172P 0.10 TCGA-DK-A3IK-01 9 114296106 114296106 G T ZNF483 Nonsense_Mutation p.E197* 0.24 TCGA-DK-A3IK-01 9 131286012 131286012 C A GLE1 Missense_Mutation p.L262M 0.18 tolerated(0.14) probably_damaging(0.937) TCGA-DK-A3IK-01 9 131387392 131387392 G A SPTAN1 Silent p.E2001E 0.12 TCGA-DK-A3IK-01 9 131553894 131553894 G C TBC1D13 Silent p.L74L 0.17 TCGA-DK-A3IK-01 9 140354928 140354928 C A PNPLA7 Nonsense_Mutation p.E1316* 0.44 TCGA-DK-A3IK-01 9 140437237 140437237 C T PNPLA7 Missense_Mutation p.E175K 0.15 deleterious(0) probably_damaging(0.976) TCGA-DK-A3IK-01 9 33941739 33941739 T C UBAP2 Missense_Mutation p.M613V 0.11 tolerated(0.43) benign(0.029) TCGA-DK-A3IK-01 9 75526950 75526950 C G ALDH1A1 Missense_Mutation p.W375S 0.20 tolerated(0.4) benign(0.09) TCGA-DK-A3IK-01 9 78973528 78973528 G A PCSK5 Missense_Mutation p.G1758E 0.13 tolerated(0.07) possibly_damaging(0.721) TCGA-DK-A3IK-01 9 8500765 8500765 G C PTPRD Missense_Mutation p.T706S 0.35 deleterious(0.01) benign(0) TCGA-DK-A3IK-01 9 99327675 99327675 T A CDC14B Missense_Mutation p.N84I 0.15 deleterious(0) possibly_damaging(0.666) TCGA-DK-A3IK-01 X 100808026 100808026 G C ARMCX1 Missense_Mutation p.W38S 0.24 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-DK-A3IK-01 X 102931203 102931203 T C MORF4L2 Silent p.L251L 0.10 TCGA-DK-A3IK-01 X 151900840 151900840 G C MAGEA12 5'UTR 0.21 TCGA-DK-A3IK-01 X 152968387 152968387 C G BCAP31 Intron 0.30 TCGA-DK-A3IK-01 X 53270978 53270978 A T IQSEC2 Missense_Mutation p.N1001K 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A3IK-01 X 65476064 65476064 G A HEPH Missense_Mutation p.E984K 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IL-01 10 121189924 121189924 G A GRK5 Missense_Mutation p.V191M 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A3IL-01 10 124692098 124692098 C A C10orf88 Missense_Mutation p.D395Y 0.18 deleterious(0) probably_damaging(0.958) TCGA-DK-A3IL-01 10 133930751 133930751 G T JAKMIP3 Silent p.L102L 0.05 TCGA-DK-A3IL-01 10 26463335 26463335 C T MYO3A Missense_Mutation p.T1381I 0.38 tolerated_low_confidence(0.11) benign(0.017) TCGA-DK-A3IL-01 10 27035439 27035439 G C PDSS1 3'UTR 0.21 TCGA-DK-A3IL-01 10 38241661 38241661 C T ZNF25 Silent p.E255E 0.26 TCGA-DK-A3IL-01 10 85997383 85997383 G A LRIT1 Missense_Mutation p.T61I 0.82 deleterious(0) possibly_damaging(0.604) TCGA-DK-A3IL-01 11 108009666 108009666 T C ACAT1 Silent p.V159V 0.24 TCGA-DK-A3IL-01 11 118997680 118997680 G A HINFP Missense_Mutation p.R9Q 0.63 tolerated(0.11) benign(0.036) TCGA-DK-A3IL-01 11 17414623 17414623 C A ABCC8 Missense_Mutation p.G1554V 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 11 20940871 20940871 G C NELL1 Missense_Mutation p.M250I 0.41 tolerated(0.32) benign(0.358) TCGA-DK-A3IL-01 11 36422827 36422827 C A PRR5L Silent p.A52A 0.19 TCGA-DK-A3IL-01 11 45924441 45924441 T C MAPK8IP1 Missense_Mutation p.S375P 0.67 deleterious(0.01) probably_damaging(0.976) TCGA-DK-A3IL-01 11 55322269 55322269 G T OR4C15 Missense_Mutation p.V163L 0.13 deleterious_low_confidence(0.03) benign(0.192) TCGA-DK-A3IL-01 11 62592798 62592798 G C STX5 Missense_Mutation p.S185C 0.60 deleterious(0) probably_damaging(0.984) TCGA-DK-A3IL-01 11 64374714 64374714 G A NRXN2 Missense_Mutation p.T1698M 0.22 deleterious(0.01) benign(0.274) TCGA-DK-A3IL-01 11 64428312 64428312 G A NRXN2 Missense_Mutation p.R700C 0.57 tolerated(0.12) possibly_damaging(0.861) TCGA-DK-A3IL-01 11 64811717 64811717 G A SAC3D1 Missense_Mutation p.E199K 0.18 tolerated(0.07) possibly_damaging(0.589) TCGA-DK-A3IL-01 11 65617466 65617466 G T SNX32 Missense_Mutation p.A73S 0.58 tolerated(0.75) benign(0.135) TCGA-DK-A3IL-01 11 66384255 66384255 T A RBM14-RBM4 Missense_Mutation p.F22I 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 11 73670624 73670624 G C DNAJB13 Missense_Mutation p.W86C 0.76 tolerated(0.09) possibly_damaging(0.76) TCGA-DK-A3IL-01 11 73817441 73817441 C A C2CD3 Missense_Mutation p.G687V 0.25 tolerated(0.06) benign(0.248) TCGA-DK-A3IL-01 11 76796098 76796098 G T CAPN5 Splice_Site p.X55_splice 0.15 TCGA-DK-A3IL-01 11 800221 800221 C T PIDD Silent p.V728V 0.29 TCGA-DK-A3IL-01 12 119568521 119568521 G A SRRM4 Missense_Mutation p.R218H 0.50 tolerated_low_confidence(0.08) benign(0.005) TCGA-DK-A3IL-01 12 124158196 124158196 G T TCTN2 Missense_Mutation p.G101V 0.23 tolerated(0.08) benign(0.09) TCGA-DK-A3IL-01 12 126135372 126135372 G T TMEM132B Missense_Mutation p.G591V 0.25 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IL-01 12 49944089 49944089 G T KCNH3 Missense_Mutation p.G632V 0.20 deleterious(0) benign(0.102) TCGA-DK-A3IL-01 12 54854248 54854248 T C GTSF1 Missense_Mutation p.S134G 0.38 tolerated(0.08) benign(0.001) TCGA-DK-A3IL-01 12 56355112 56355112 G T PMEL Missense_Mutation p.T108N 0.60 tolerated(0.14) possibly_damaging(0.462) TCGA-DK-A3IL-01 12 56481649 56481649 T A ERBB3 Missense_Mutation p.H228Q 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 12 88486515 88486515 C A CEP290 Missense_Mutation p.R1135M 0.31 probably_damaging(0.999) TCGA-DK-A3IL-01 13 26828866 26828866 G T CDK8 Missense_Mutation p.G30C 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 13 33096357 33096357 T C N4BP2L2 Missense_Mutation p.N50D 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IL-01 13 48955538 48955538 C T RB1 Nonsense_Mutation p.R552* 0.43 TCGA-DK-A3IL-01 13 70314576 70314576 G A KLHL1 Silent p.A584A 0.44 TCGA-DK-A3IL-01 13 92560246 92560246 G A GPC5 Missense_Mutation p.V446I 0.49 tolerated(0.06) benign(0.17) TCGA-DK-A3IL-01 13 99461565 99461565 A T DOCK9 Intron 0.14 TCGA-DK-A3IL-01 14 106610576 106610576 T G IGHV3-15 Missense_Mutation p.K32Q 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-DK-A3IL-01 14 22192095 22192095 G A TRAV3 5'UTR 0.48 TCGA-DK-A3IL-01 14 25281894 25281894 G A STXBP6 3'UTR 0.60 TCGA-DK-A3IL-01 14 45431955 45431955 G A FAM179B Missense_Mutation p.E111K 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A3IL-01 14 62547819 62547819 G C SYT16 Missense_Mutation p.A421P 0.52 deleterious(0) benign(0.045) TCGA-DK-A3IL-01 14 94004365 94004365 G C UNC79 Missense_Mutation p.V208L 0.47 tolerated(0.08) probably_damaging(0.994) TCGA-DK-A3IL-01 15 101595287 101595287 T A LRRK1 Silent p.L1397L 0.27 TCGA-DK-A3IL-01 15 49118194 49118194 G C SHC4 Missense_Mutation p.P623A 0.26 tolerated_low_confidence(0.4) benign(0.002) TCGA-DK-A3IL-01 15 77323595 77323595 C T PSTPIP1 Silent p.S239S 0.39 TCGA-DK-A3IL-01 16 24582981 24582981 A G RBBP6 Missense_Mutation p.S1532G 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-DK-A3IL-01 16 31335844 31335844 G T ITGAM Missense_Mutation p.Q710H 0.41 tolerated(0.07) possibly_damaging(0.789) TCGA-DK-A3IL-01 16 3168975 3168975 G T ZNF205 Missense_Mutation p.R185L 0.32 tolerated(0.74) benign(0.005) TCGA-DK-A3IL-01 16 4764077 4764077 C G ANKS3 Silent p.L228L 0.33 TCGA-DK-A3IL-01 16 57157339 57157339 A G CPNE2 Missense_Mutation p.Y294C 0.47 tolerated(0.09) benign(0.005) TCGA-DK-A3IL-01 16 57416702 57416708 ACCATGG - CX3CL1 Frame_Shift_Del p.M319Pfs*108 0.31 TCGA-DK-A3IL-01 16 66969416 66969416 C G CES2 Missense_Mutation p.P24A 0.21 deleterious_low_confidence(0.02) benign(0.001) TCGA-DK-A3IL-01 16 68331255 68331255 C T SLC7A6 3'UTR 0.48 TCGA-DK-A3IL-01 16 81076953 81076953 C G ATMIN Missense_Mutation p.L284V 0.33 tolerated(0.63) benign(0.004) TCGA-DK-A3IL-01 16 82891976 82891976 C T CDH13 Silent p.L66L 0.54 TCGA-DK-A3IL-01 16 88008777 88008777 G C BANP Missense_Mutation p.S19T 0.34 tolerated_low_confidence(0.57) probably_damaging(0.983) TCGA-DK-A3IL-01 17 10608309 10608309 C T ADPRM Silent p.V22V 0.13 TCGA-DK-A3IL-01 17 27959241 27959241 G T SSH2 Missense_Mutation p.H964N 0.52 tolerated_low_confidence(0.59) benign(0.028) TCGA-DK-A3IL-01 17 30348423 30348423 G C LRRC37B Silent p.L86L 0.20 TCGA-DK-A3IL-01 17 33520917 33520917 G T SLC35G3 Missense_Mutation p.S137Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IL-01 17 40629667 40629667 A G ATP6V0A1 Missense_Mutation p.H145R 0.48 tolerated(0.43) benign(0.003) TCGA-DK-A3IL-01 17 46971758 46971758 A G ATP5G1 Missense_Mutation p.I22V 0.29 tolerated(0.5) benign(0.011) TCGA-DK-A3IL-01 17 74740413 74740413 G C MFSD11 Missense_Mutation p.R169P 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.64 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 17 7802505 7802505 C T CHD3 Silent p.Y835Y 0.75 TCGA-DK-A3IL-01 17 79612041 79612041 C T TSPAN10 Silent p.L20L 0.23 TCGA-DK-A3IL-01 18 2575029 2575029 C T NDC80 Missense_Mutation p.P48L 0.48 deleterious(0) benign(0.012) TCGA-DK-A3IL-01 18 52258391 52258391 T C DYNAP 5'UTR 0.64 TCGA-DK-A3IL-01 18 59483323 59483323 C G RNF152 Missense_Mutation p.S125T 0.74 tolerated_low_confidence(0.7) benign(0.005) TCGA-DK-A3IL-01 19 11660487 11660487 C A CNN1 Silent p.G257G 0.76 TCGA-DK-A3IL-01 19 16686879 16686879 C T MED26 Missense_Mutation p.D588N 0.90 deleterious(0.02) possibly_damaging(0.712) TCGA-DK-A3IL-01 19 31039827 31039827 G A ZNF536 Missense_Mutation p.D1101N 0.34 deleterious_low_confidence(0) benign(0.21) TCGA-DK-A3IL-01 19 35175840 35175840 C G ZNF302 Missense_Mutation p.L300V 0.19 deleterious(0) possibly_damaging(0.724) TCGA-DK-A3IL-01 19 37619520 37619520 G A ZNF420 Missense_Mutation p.G543S 0.31 tolerated(1) possibly_damaging(0.855) TCGA-DK-A3IL-01 19 39421399 39421399 A T SARS2 5'UTR 0.52 TCGA-DK-A3IL-01 19 39913486 39913486 G A PLEKHG2 Missense_Mutation p.E598K 0.22 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DK-A3IL-01 19 40580973 40580973 T C ZNF780A Missense_Mutation p.Q460R 0.38 tolerated(0.16) benign(0.029) TCGA-DK-A3IL-01 19 40882622 40882622 G C PLD3 Missense_Mutation p.A376P 0.44 tolerated(1) benign(0.001) TCGA-DK-A3IL-01 19 42911490 42911490 T A LIPE Missense_Mutation p.Q658L 0.46 deleterious(0) probably_damaging(0.98) TCGA-DK-A3IL-01 19 44284956 44284956 C T KCNN4 Missense_Mutation p.E20K 0.37 tolerated(0.05) probably_damaging(0.998) TCGA-DK-A3IL-01 19 47876898 47876898 C T DHX34 Missense_Mutation p.R669C 0.35 deleterious(0) probably_damaging(0.931) TCGA-DK-A3IL-01 19 49548530 49548530 C A CGB5 Missense_Mutation p.D159E 0.17 tolerated_low_confidence(0.13) benign(0.16) TCGA-DK-A3IL-01 19 50961863 50961863 C G MYBPC2 Silent p.A786A 0.28 TCGA-DK-A3IL-01 19 51875242 51875244 AGG - NKG7 In_Frame_Del p.S130del 0.24 TCGA-DK-A3IL-01 19 53793189 53793189 C G BIRC8 Missense_Mutation p.E147Q 0.30 tolerated(0.07) possibly_damaging(0.905) TCGA-DK-A3IL-01 19 54080062 54080062 G T ZNF331 Missense_Mutation p.W83L 0.14 tolerated(0.28) benign(0.017) TCGA-DK-A3IL-01 19 54742780 54742780 T G LILRA6 3'UTR 0.38 TCGA-DK-A3IL-01 19 55148021 55148021 C T LILRB1 Missense_Mutation p.A577V 0.44 deleterious(0.01) benign(0.328) TCGA-DK-A3IL-01 19 56482062 56482062 C T NLRP8 Missense_Mutation p.S845L 0.41 tolerated(0.08) benign(0.001) TCGA-DK-A3IL-01 19 58965138 58965138 G A ZNF324B Missense_Mutation p.A24T 0.41 tolerated(0.66) probably_damaging(0.968) TCGA-DK-A3IL-01 19 59028486 59028486 T C ZBTB45 Silent p.P185P 0.45 TCGA-DK-A3IL-01 19 6230639 6230639 T C MLLT1 Missense_Mutation p.K121R 0.72 deleterious(0.01) benign(0.341) TCGA-DK-A3IL-01 1 109439511 109439511 G T GPSM2 Missense_Mutation p.A28S 0.23 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IL-01 1 1322525 1322525 C G CCNL2 3'UTR 0.25 TCGA-DK-A3IL-01 1 148579675 148579675 T A NBPF15 Missense_Mutation p.L82H 0.22 deleterious(0) possibly_damaging(0.864) TCGA-DK-A3IL-01 1 150671083 150671083 T A HORMAD1 3'UTR 0.36 TCGA-DK-A3IL-01 1 158369175 158369175 G A OR10T2 Missense_Mutation p.L28F 0.18 tolerated(0.1) benign(0.055) TCGA-DK-A3IL-01 1 158986391 158986391 G T IFI16 Missense_Mutation p.Q150H 0.12 tolerated(0.07) benign(0.316) TCGA-DK-A3IL-01 1 15978267 15978267 C G DDI2 Missense_Mutation p.P354A 0.14 tolerated(0.26) possibly_damaging(0.509) TCGA-DK-A3IL-01 1 160109741 160109741 G A ATP1A2 Missense_Mutation p.V1001I 0.33 tolerated(1) benign(0.001) TCGA-DK-A3IL-01 1 165175152 165175152 G A LMX1A Nonsense_Mutation p.R313* 0.24 TCGA-DK-A3IL-01 1 165532872 165532872 C T LRRC52 Silent p.I251I 0.24 TCGA-DK-A3IL-01 1 171073019 171073019 G A FMO3 Missense_Mutation p.D76N 0.59 deleterious(0) possibly_damaging(0.757) TCGA-DK-A3IL-01 1 171162520 171162520 C T FMO2 Missense_Mutation p.T60I 0.54 tolerated(0.54) benign(0.079) TCGA-DK-A3IL-01 1 202709880 202709880 T C KDM5B Silent p.A1002A 0.19 TCGA-DK-A3IL-01 1 204511994 204511994 G A MDM4 Silent p.L198L 0.33 TCGA-DK-A3IL-01 1 24663111 24663112 - A GRHL3 Frame_Shift_Ins p.A138Gfs*32 0.21 TCGA-DK-A3IL-01 1 24668758 24668758 G T GRHL3 Missense_Mutation p.D401Y 0.58 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 1 26349272 26349272 C T EXTL1 Silent p.G45G 0.42 TCGA-DK-A3IL-01 1 26610895 26610895 G A UBXN11 Nonsense_Mutation p.Q311* 0.29 TCGA-DK-A3IL-01 1 37270762 37270762 C T GRIK3 Silent p.E797E 0.21 TCGA-DK-A3IL-01 1 39802313 39802313 C A MACF1 Intron 0.54 TCGA-DK-A3IL-01 1 44086245 44086245 G T PTPRF Missense_Mutation p.A1787S 0.46 deleterious(0.02) possibly_damaging(0.528) TCGA-DK-A3IL-01 1 53540317 53540317 A G PODN Missense_Mutation p.N197S 0.21 tolerated(0.26) benign(0.279) TCGA-DK-A3IL-01 1 55562240 55562240 C A USP24 Missense_Mutation p.D1998Y 0.74 deleterious(0) possibly_damaging(0.639) TCGA-DK-A3IL-01 1 57169954 57169954 C A PRKAA2 Missense_Mutation p.P367T 0.65 deleterious(0.02) possibly_damaging(0.715) TCGA-DK-A3IL-01 1 9324741 9324741 G T H6PD Missense_Mutation p.S730I 0.22 deleterious(0) probably_damaging(0.972) TCGA-DK-A3IL-01 20 20610169 20610169 C A RALGAPA2 Missense_Mutation p.Q357H 0.47 tolerated(0.08) benign(0.289) TCGA-DK-A3IL-01 20 44418583 44418583 G T WFDC3 Missense_Mutation p.A11E 0.31 deleterious(0) unknown(0) TCGA-DK-A3IL-01 20 57768368 57768368 C T ZNF831 Missense_Mutation p.P765L 0.31 deleterious(0.03) possibly_damaging(0.82) TCGA-DK-A3IL-01 20 61513072 61513072 C G DIDO1 Missense_Mutation p.R1412S 0.49 benign(0.001) TCGA-DK-A3IL-01 20 62608657 62608657 C G SAMD10 Missense_Mutation p.W65S 0.55 deleterious(0.04) possibly_damaging(0.694) TCGA-DK-A3IL-01 20 62664245 62664245 G T PRPF6 Missense_Mutation p.G909W 0.52 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 20 62871155 62871155 A G MYT1 Missense_Mutation p.N1046D 0.53 probably_damaging(0.995) TCGA-DK-A3IL-01 21 11097575 11097575 C A BAGE2 RNA 0.11 TCGA-DK-A3IL-01 21 44192566 44192566 C A PDE9A Missense_Mutation p.D568E 0.22 tolerated(1) benign(0.001) TCGA-DK-A3IL-01 22 16449133 16449133 A C OR11H1 Silent p.G224G 0.40 TCGA-DK-A3IL-01 22 22869978 22869978 G A ZNF280A 5'UTR 0.38 TCGA-DK-A3IL-01 22 26173598 26173598 G T MYO18B Missense_Mutation p.A640S 0.19 deleterious(0) probably_damaging(0.991) TCGA-DK-A3IL-01 22 26219621 26219621 C A MYO18B Missense_Mutation p.L891I 0.46 tolerated(0.2) benign(0.25) TCGA-DK-A3IL-01 22 29837488 29837488 G C RFPL1 Intron 0.88 TCGA-DK-A3IL-01 22 37524836 37524836 G T IL2RB Missense_Mutation p.A319E 0.27 tolerated(0.08) benign(0.078) TCGA-DK-A3IL-01 22 40804819 40804819 C T SGSM3 Silent p.V625V 0.24 TCGA-DK-A3IL-01 22 41783535 41783535 G A TEF Missense_Mutation p.S113N 0.53 tolerated(0.08) benign(0.038) TCGA-DK-A3IL-01 22 50705436 50705436 C T MAPK11 Missense_Mutation p.M179I 0.17 deleterious(0) benign(0.255) TCGA-DK-A3IL-01 2 101624308 101624308 G A TBC1D8 Missense_Mutation p.S1133F 0.19 deleterious_low_confidence(0.03) benign(0.081) TCGA-DK-A3IL-01 2 101624437 101624437 G C TBC1D8 Missense_Mutation p.A1090G 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A3IL-01 2 105890144 105890144 C T TGFBRAP1 Missense_Mutation p.G557R 0.18 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IL-01 2 1488451 1488451 C A TPO Missense_Mutation p.D474E 0.45 deleterious(0.01) benign(0.327) TCGA-DK-A3IL-01 2 153476122 153476122 G C FMNL2 Missense_Mutation p.G576A 0.29 possibly_damaging(0.899) TCGA-DK-A3IL-01 2 169721544 169721544 G C NOSTRIN 3'UTR 0.57 TCGA-DK-A3IL-01 2 175979453 175979453 T C ATF2 Silent p.V197V 0.56 TCGA-DK-A3IL-01 2 179613658 179613658 A G TTN Intron 0.53 TCGA-DK-A3IL-01 2 179649056 179649056 A G TTN Missense_Mutation p.I839T 0.46 TCGA-DK-A3IL-01 2 17998252 17998252 G A MSGN1 Missense_Mutation p.S156N 0.32 tolerated(0.07) possibly_damaging(0.473) TCGA-DK-A3IL-01 2 20647449 20647449 C T RHOB Missense_Mutation p.P75S 0.49 tolerated(0.07) possibly_damaging(0.453) TCGA-DK-A3IL-01 2 219900359 219900359 G A CCDC108 Missense_Mutation p.H129Y 0.78 tolerated(0.13) benign(0.245) TCGA-DK-A3IL-01 2 224462395 224462395 C G SCG2 Missense_Mutation p.D536H 0.64 deleterious(0.05) possibly_damaging(0.859) TCGA-DK-A3IL-01 2 24254029 24254029 G A C2orf44 Missense_Mutation p.S647F 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IL-01 2 27672643 27672643 C A IFT172 Missense_Mutation p.D1359Y 0.50 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IL-01 2 49189908 49189908 G A FSHR Silent p.Y684Y 0.26 TCGA-DK-A3IL-01 2 63176182 63176182 G A EHBP1 Missense_Mutation p.S769N 0.60 tolerated_low_confidence(1) benign(0) TCGA-DK-A3IL-01 2 85894867 85894867 C A SFTPB Nonsense_Mutation p.E56* 0.58 TCGA-DK-A3IL-01 3 119120886 119120886 G A ARHGAP31 Silent p.P429P 0.23 TCGA-DK-A3IL-01 3 134968233 134968233 G A EPHB1 Missense_Mutation p.V916M 0.53 deleterious(0.01) probably_damaging(0.939) TCGA-DK-A3IL-01 3 186276258 186276258 C T TBCCD1 Missense_Mutation p.R147K 0.18 tolerated(0.07) benign(0.002) TCGA-DK-A3IL-01 3 189586386 189586386 G A TP63 Missense_Mutation p.R337Q 0.25 deleterious(0.03) benign(0.163) TCGA-DK-A3IL-01 3 190366314 190366314 G A IL1RAP Intron 0.18 TCGA-DK-A3IL-01 3 37144444 37144444 C A LRRFIP2 Missense_Mutation p.D282Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IL-01 3 44685245 44685245 G T ZNF197 Nonsense_Mutation p.E875* 0.32 TCGA-DK-A3IL-01 3 46245233 46245233 C T CCR1 Missense_Mutation p.S191N 0.36 tolerated(0.31) benign(0.052) TCGA-DK-A3IL-01 3 46484956 46484956 T C LTF Missense_Mutation p.Y544C 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 3 49051677 49051677 C T WDR6 Missense_Mutation p.P903S 0.43 tolerated(0.32) benign(0.009) TCGA-DK-A3IL-01 3 52412779 52412779 G T DNAH1 Missense_Mutation p.D2454Y 0.53 possibly_damaging(0.776) TCGA-DK-A3IL-01 3 52538860 52538860 C A STAB1 Missense_Mutation p.Q449K 0.25 tolerated(0.12) benign(0.008) TCGA-DK-A3IL-01 4 102946511 102946511 C G BANK1 Missense_Mutation p.S480C 0.19 tolerated(0.1) possibly_damaging(0.891) TCGA-DK-A3IL-01 4 114278218 114278218 A G ANK2 Missense_Mutation p.Q2815R 0.46 benign(0.197) TCGA-DK-A3IL-01 4 156631721 156631721 C T GUCY1A3 Missense_Mutation p.S135F 0.54 tolerated(0.14) possibly_damaging(0.722) TCGA-DK-A3IL-01 4 170988519 170988519 T C AADAT Silent p.L307L 0.44 TCGA-DK-A3IL-01 4 187525600 187525600 C A FAT1 Silent p.P3493P 0.25 TCGA-DK-A3IL-01 4 1936889 1936889 A G WHSC1 Missense_Mutation p.K525R 0.19 tolerated(0.19) benign(0.023) TCGA-DK-A3IL-01 4 57842717 57842717 G T NOA1 Silent p.G345G 0.25 TCGA-DK-A3IL-01 4 8029554 8029554 C A ABLIM2 Missense_Mutation p.C400F 0.23 tolerated(0.21) benign(0.157) TCGA-DK-A3IL-01 5 137722024 137722028 GGACT - KDM3B Frame_Shift_Del p.R365Tfs*6 0.35 TCGA-DK-A3IL-01 5 140250447 140250447 G T PCDHA11 Missense_Mutation p.G587C 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A3IL-01 5 140595303 140595303 C G PCDHB13 Missense_Mutation p.H536Q 0.07 tolerated_low_confidence(0.35) benign(0) TCGA-DK-A3IL-01 5 140810491 140810492 - CC PCDHGA12 Frame_Shift_Ins p.R57Pfs*22 0.15 TCGA-DK-A3IL-01 5 141233975 141233975 T C PCDH1 Missense_Mutation p.M1116V 0.19 deleterious(0.04) possibly_damaging(0.879) TCGA-DK-A3IL-01 5 143586225 143586225 C A KCTD16 5'UTR 0.36 TCGA-DK-A3IL-01 5 161569191 161569191 T C GABRG2 Missense_Mutation p.V304A 0.14 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IL-01 5 192543 192543 C A LRRC14B Missense_Mutation p.T297K 0.50 tolerated(1) benign(0.003) TCGA-DK-A3IL-01 5 32059421 32059421 C G PDZD2 Missense_Mutation p.S759R 0.50 deleterious(0.05) probably_damaging(1) TCGA-DK-A3IL-01 5 43245942 43245942 G A NIM1K Missense_Mutation p.R22H 0.55 tolerated_low_confidence(0.08) benign(0.155) TCGA-DK-A3IL-01 5 63871635 63871635 C T RGS7BP Missense_Mutation p.R123W 0.62 deleterious_low_confidence(0) benign(0.441) TCGA-DK-A3IL-01 6 112382385 112382385 G T WISP3 Missense_Mutation p.K98N 0.72 deleterious(0) possibly_damaging(0.897) TCGA-DK-A3IL-01 6 117128326 117128326 C T GPRC6A Missense_Mutation p.R181H 0.62 tolerated(0.08) benign(0.243) TCGA-DK-A3IL-01 6 139097341 139097341 C A CCDC28A Silent p.A118A 0.79 TCGA-DK-A3IL-01 6 152464820 152464820 C T SYNE1 Missense_Mutation p.E8353K 0.24 benign(0.222) TCGA-DK-A3IL-01 6 29598366 29598366 G A GABBR1 Missense_Mutation p.T115M 0.28 tolerated_low_confidence(0.09) possibly_damaging(0.471) TCGA-DK-A3IL-01 6 44197137 44197137 G C SLC29A1 Missense_Mutation p.V14L 0.67 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IL-01 6 44361233 44361233 G A CDC5L Missense_Mutation p.R121Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IL-01 6 90359913 90359913 C G MDN1 Missense_Mutation p.D5346H 0.93 unknown(0) TCGA-DK-A3IL-01 7 100678782 100678782 T C MUC17 Missense_Mutation p.V1362A 0.43 unknown(0) TCGA-DK-A3IL-01 7 105732326 105732326 C A SYPL1 Missense_Mutation p.E235D 0.46 tolerated(0.18) probably_damaging(0.997) TCGA-DK-A3IL-01 7 128471003 128471003 C G FLNC Silent p.L104L 0.45 TCGA-DK-A3IL-01 7 137271869 137271869 G T DGKI Missense_Mutation p.L467M 0.37 deleterious(0.01) probably_damaging(1) TCGA-DK-A3IL-01 7 156762413 156762413 G - NOM1 3'UTR 0.17 TCGA-DK-A3IL-01 7 20199459 20199459 C T MACC1 Silent p.R175R 0.10 TCGA-DK-A3IL-01 7 21631013 21631013 C T DNAH11 Missense_Mutation p.R829C 0.29 benign(0.013) TCGA-DK-A3IL-01 7 23347511 23347511 G T MALSU1 Missense_Mutation p.D154Y 0.38 deleterious(0.01) benign(0.141) TCGA-DK-A3IL-01 7 72419115 72419115 T C POM121 3'UTR 0.37 TCGA-DK-A3IL-01 8 10469938 10469938 C T RP1L1 Missense_Mutation p.G557D 0.39 benign(0.202) TCGA-DK-A3IL-01 8 11615912 11615912 G A GATA4 Silent p.Q419Q 0.36 TCGA-DK-A3IL-01 8 144810312 144810312 T G FAM83H Missense_Mutation p.D440A 0.23 deleterious(0.01) benign(0.424) TCGA-DK-A3IL-01 8 23004489 23004489 C T TNFRSF10D Missense_Mutation p.R156Q 0.13 tolerated(0.55) benign(0.02) TCGA-DK-A3IL-01 8 39111966 39111966 C A ADAM32 Missense_Mutation p.P646T 0.73 tolerated(0.18) benign(0.085) TCGA-DK-A3IL-01 8 42050684 42050684 C G PLAT Missense_Mutation p.G7A 0.30 tolerated_low_confidence(0.32) benign(0.004) TCGA-DK-A3IL-01 8 77764038 77764038 G T ZFHX4 Missense_Mutation p.E1627D 0.44 benign(0.388) TCGA-DK-A3IL-01 9 111849557 111849557 C T TMEM245 Missense_Mutation p.V406M 0.41 tolerated(0.25) benign(0.009) TCGA-DK-A3IL-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A3IL-01 9 17466040 17466040 G T CNTLN Missense_Mutation p.R1198I 0.48 deleterious(0) probably_damaging(0.953) TCGA-DK-A3IL-01 9 87356831 87356837 TAATTTA - NTRK2 Frame_Shift_Del p.I396Kfs*41 0.55 TCGA-DK-A3IL-01 9 94118381 94118381 G C AUH Missense_Mutation p.L107V 0.17 deleterious(0.04) benign(0.043) TCGA-DK-A3IL-01 9 98279120 98279120 G T RP11-435O5.4 3'Flank 0.20 TCGA-DK-A3IL-01 X 107331994 107331994 A G PSMD10 Silent p.N67N 0.52 TCGA-DK-A3IL-01 X 107938638 107938638 C A COL4A5 Missense_Mutation p.L1655M 0.44 probably_damaging(0.999) TCGA-DK-A3IL-01 X 110388131 110388131 G C PAK3 Missense_Mutation p.S107T 0.53 tolerated_low_confidence(0.8) benign(0) TCGA-DK-A3IL-01 X 117054334 117054334 C A KLHL13 Splice_Site p.X84_splice 0.47 TCGA-DK-A3IL-01 X 122754808 122754808 G A THOC2 Missense_Mutation p.R1409C 0.54 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IL-01 X 128657380 128657380 G C SMARCA1 5'UTR 0.43 TCGA-DK-A3IL-01 X 131233527 131233527 C T FRMD7 Silent p.E58E 0.28 TCGA-DK-A3IL-01 X 134680317 134680317 T - DDX26B Frame_Shift_Del p.L120* 0.44 TCGA-DK-A3IL-01 X 148627103 148627103 T A CXorf40A Intron 0.42 TCGA-DK-A3IL-01 X 152858159 152858159 G T FAM58A Missense_Mutation p.N152K 0.24 tolerated(0.09) benign(0.013) TCGA-DK-A3IL-01 X 153038980 153038980 C T PLXNB3 Nonsense_Mutation p.R1054* 0.55 TCGA-DK-A3IL-01 X 32383166 32383166 G T DMD Silent p.R1666R 0.53 TCGA-DK-A3IL-01 X 35993361 35993361 G A CXorf22 Silent p.Q784Q 0.51 TCGA-DK-A3IL-01 X 48682372 48682372 A G HDAC6 Missense_Mutation p.H1115R 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IL-01 X 68382762 68382762 G A PJA1 Missense_Mutation p.S107L 0.17 tolerated(0.55) benign(0.005) TCGA-DK-A3IL-01 X 70775117 70775117 A G OGT Missense_Mutation p.Y269C 0.45 deleterious(0.01) probably_damaging(0.924) TCGA-DK-A3IL-01 X 9900619 9900619 C T SHROOM2 Missense_Mutation p.P1099L 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-DK-A3IM-01 10 3823885 3823885 C T KLF6 Silent p.R208R 0.06 TCGA-DK-A3IM-01 10 3824277 3824277 C A KLF6 Nonsense_Mutation p.E78* 0.13 TCGA-DK-A3IM-01 10 50669504 50669504 C T ERCC6 Missense_Mutation p.A1293T 0.42 deleterious(0) probably_damaging(0.992) TCGA-DK-A3IM-01 10 82403797 82403797 G A SH2D4B Missense_Mutation p.R345Q 0.21 tolerated_low_confidence(0.41) benign(0.062) TCGA-DK-A3IM-01 10 84498404 84498404 C T NRG3 Missense_Mutation p.P342L 0.08 deleterious(0.05) probably_damaging(0.943) TCGA-DK-A3IM-01 10 98411088 98411088 G C PIK3AP1 Missense_Mutation p.T302S 0.30 tolerated(0.07) possibly_damaging(0.755) TCGA-DK-A3IM-01 10 99133483 99133483 G A RRP12 Silent p.L625L 0.73 TCGA-DK-A3IM-01 11 108357060 108357060 A G KDELC2 Missense_Mutation p.F170L 0.05 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IM-01 11 57958327 57958327 G A OR9Q2 Missense_Mutation p.R122H 0.34 deleterious(0.02) probably_damaging(0.97) TCGA-DK-A3IM-01 11 61959667 61959667 C T SCGB1D1 Silent p.C65C 0.54 TCGA-DK-A3IM-01 11 62393905 62393905 T A GANAB Silent p.G864G 0.29 TCGA-DK-A3IM-01 11 64033975 64033975 C A PLCB3 Missense_Mutation p.T1122K 0.18 tolerated(1) possibly_damaging(0.908) TCGA-DK-A3IM-01 12 111786052 111786052 A G CUX2 Missense_Mutation p.M1462V 0.15 deleterious(0.01) probably_damaging(0.963) TCGA-DK-A3IM-01 12 124354930 124354930 T C DNAH10 Missense_Mutation p.Y2395H 0.45 benign(0.408) TCGA-DK-A3IM-01 12 25672949 25672949 C T IFLTD1 Missense_Mutation p.V287I 0.46 tolerated(1) benign(0.001) TCGA-DK-A3IM-01 12 28116292 28116292 C T PTHLH Silent p.E171E 0.36 TCGA-DK-A3IM-01 12 49424741 49424741 G A KMT2D Nonsense_Mutation p.R4536* 0.23 TCGA-DK-A3IM-01 12 49434325 49434325 G A KMT2D Nonsense_Mutation p.R2410* 0.52 TCGA-DK-A3IM-01 12 57628204 57628204 C T SHMT2 3'UTR 0.19 TCGA-DK-A3IM-01 12 62148677 62148677 G A FAM19A2 Nonsense_Mutation p.R79* 0.58 TCGA-DK-A3IM-01 13 103053996 103053996 A T FGF14 Silent p.T11T 0.92 TCGA-DK-A3IM-01 13 28197152 28197152 G C POLR1D Missense_Mutation p.R56P 0.24 deleterious(0) probably_damaging(0.928) TCGA-DK-A3IM-01 13 30091860 30091860 C T SLC7A1 Missense_Mutation p.D454N 0.20 tolerated(0.39) benign(0.174) TCGA-DK-A3IM-01 13 32910615 32910615 C A BRCA2 Missense_Mutation p.S708Y 0.22 tolerated(1) benign(0.003) TCGA-DK-A3IM-01 13 39917942 39917942 T C LHFP 3'UTR 0.80 TCGA-DK-A3IM-01 13 48919262 48919263 AA - RB1 Frame_Shift_Del p.K143Sfs*2 0.42 TCGA-DK-A3IM-01 14 52735003 52735003 C A PTGDR Missense_Mutation p.S157R 0.05 tolerated(0.11) possibly_damaging(0.635) TCGA-DK-A3IM-01 15 28231744 28231744 A G OCA2 Missense_Mutation p.C410R 0.74 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IM-01 15 52662482 52662482 G A MYO5A Missense_Mutation p.R984W 0.86 deleterious(0.01) benign(0.3) TCGA-DK-A3IM-01 16 28877696 28877696 C T SH2B1 Missense_Mutation p.P94L 0.46 deleterious(0.01) benign(0.231) TCGA-DK-A3IM-01 16 775562 775562 G A CCDC78 Missense_Mutation p.R96W 0.95 deleterious(0) probably_damaging(0.973) TCGA-DK-A3IM-01 16 81078139 81078139 C G ATMIN Missense_Mutation p.A679G 0.18 tolerated(0.14) benign(0.206) TCGA-DK-A3IM-01 17 17124813 17124813 T C FLCN Intron 0.09 TCGA-DK-A3IM-01 17 27949781 27949781 G A CORO6 5'UTR 0.25 TCGA-DK-A3IM-01 17 29112973 29112975 GAG TT CRLF3 Nonsense_Mutation p.S345* 0.12 TCGA-DK-A3IM-01 17 3195282 3195282 C T OR3A1 Missense_Mutation p.E199K 0.05 deleterious(0.03) benign(0.107) TCGA-DK-A3IM-01 17 40660605 40660605 G A ATP6V0A1 Intron 0.52 TCGA-DK-A3IM-01 17 41008400 41008400 A C AOC3 Missense_Mutation p.N709H 0.12 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IM-01 17 47388796 47388796 T C ZNF652 Missense_Mutation p.Y396C 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-DK-A3IM-01 17 47656111 47656111 G A NXPH3 Missense_Mutation p.A70T 0.42 tolerated(0.36) benign(0.157) TCGA-DK-A3IM-01 17 72363883 72363883 G A GPR142 Missense_Mutation p.R80H 0.46 tolerated_low_confidence(0.13) benign(0.021) TCGA-DK-A3IM-01 17 7329763 7329763 C T C17orf74 Silent p.I151I 0.57 TCGA-DK-A3IM-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.86 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IM-01 18 53254339 53254339 G A TCF4 Silent p.H105H 0.73 TCGA-DK-A3IM-01 19 11660528 11660528 A C CNN1 Missense_Mutation p.K271T 0.16 deleterious(0.02) probably_damaging(0.973) TCGA-DK-A3IM-01 19 12907854 12907854 G A PRDX2 3'UTR 0.23 TCGA-DK-A3IM-01 19 22155320 22155320 C T ZNF208 Missense_Mutation p.G839D 0.18 tolerated(0.05) unknown(0) TCGA-DK-A3IM-01 19 2403105 2403105 C T TMPRSS9 Silent p.S160S 0.62 TCGA-DK-A3IM-01 19 2717599 2717599 G A DIRAS1 Missense_Mutation p.P69L 0.07 deleterious(0) probably_damaging(1) TCGA-DK-A3IM-01 19 41594393 41594393 T G CYP2A13 Missense_Mutation p.L6R 0.26 deleterious(0.02) unknown(0) TCGA-DK-A3IM-01 19 44129330 44129330 G A CADM4 Silent p.L276L 0.49 TCGA-DK-A3IM-01 19 55224651 55224651 G A LILRP2 RNA 0.10 TCGA-DK-A3IM-01 19 9061676 9061676 C T MUC16 Silent p.V8590V 0.63 TCGA-DK-A3IM-01 1 101705632 101705632 C T S1PR1 Silent p.D364D 0.35 TCGA-DK-A3IM-01 1 150483325 150483325 C T ECM1 Intron 0.37 TCGA-DK-A3IM-01 1 151640977 151640977 C T SNX27 Missense_Mutation p.H339Y 0.12 tolerated(0.11) benign(0.028) TCGA-DK-A3IM-01 1 152188034 152188034 C G HRNR Missense_Mutation p.G2024A 0.22 unknown(0) TCGA-DK-A3IM-01 1 152277090 152277090 G A FLG Silent p.H3424H 0.39 TCGA-DK-A3IM-01 1 152283897 152283897 G A FLG Silent p.H1155H 0.06 TCGA-DK-A3IM-01 1 170961422 170961422 G A MROH9 Silent p.T382T 0.17 TCGA-DK-A3IM-01 1 210334177 210334177 T C SYT14 Silent p.T550T 0.85 TCGA-DK-A3IM-01 1 27087417 27087417 C G ARID1A Nonsense_Mutation p.S664* 0.47 TCGA-DK-A3IM-01 1 54707834 54707844 CACTGAGTTAG - SSBP3 Splice_Site p.X253_splice 0.23 TCGA-DK-A3IM-01 1 59127114 59127114 G T MYSM1 Missense_Mutation p.T745K 0.04 deleterious(0.02) benign(0.13) TCGA-DK-A3IM-01 1 6219573 6219573 C T CHD5 Silent p.G70G 0.47 TCGA-DK-A3IM-01 1 6521714 6521714 C T TNFRSF25 Missense_Mutation p.R354Q 0.19 deleterious(0) possibly_damaging(0.576) TCGA-DK-A3IM-01 1 78958573 78958573 G A PTGFR Missense_Mutation p.A49T 0.55 tolerated(0.28) possibly_damaging(0.733) TCGA-DK-A3IM-01 1 8418613 8418613 C T RERE Missense_Mutation p.E1328K 0.64 unknown(0) TCGA-DK-A3IM-01 20 33329786 33329786 C A NCOA6 Missense_Mutation p.S1425I 0.13 benign(0.102) TCGA-DK-A3IM-01 20 35724278 35724278 C A RBL1 Silent p.G18G 0.58 TCGA-DK-A3IM-01 20 57767397 57767397 C T ZNF831 Silent p.D441D 0.17 TCGA-DK-A3IM-01 21 17250653 17250653 G - USP25 Frame_Shift_Del p.L1009Ffs*58 0.37 TCGA-DK-A3IM-01 22 16287608 16287608 G T POTEH Missense_Mutation p.T93K 0.26 deleterious_low_confidence(0) benign(0.432) TCGA-DK-A3IM-01 2 100623238 100623238 C T AFF3 Silent p.Q268Q 0.72 TCGA-DK-A3IM-01 2 111395670 111395670 A T BUB1 Missense_Mutation p.H1043Q 0.10 tolerated(0.17) benign(0.003) TCGA-DK-A3IM-01 2 33359935 33359935 G C LTBP1 Missense_Mutation p.C370S 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IM-01 3 122446797 122446797 C T PARP14 Nonsense_Mutation p.R1694* 0.41 TCGA-DK-A3IM-01 3 123419212 123419212 G A MYLK Silent p.L1035L 0.47 TCGA-DK-A3IM-01 3 13522882 13522882 A C HDAC11 Missense_Mutation p.N47H 0.25 tolerated(0.16) benign(0.002) TCGA-DK-A3IM-01 3 147114157 147114157 C T ZIC4 Missense_Mutation p.R107H 0.29 tolerated(0.53) benign(0.143) TCGA-DK-A3IM-01 3 44488285 44488285 T G ZNF445 Missense_Mutation p.S960R 0.22 tolerated(0.31) benign(0.307) TCGA-DK-A3IM-01 3 73433184 73433184 C T PDZRN3 Missense_Mutation p.G845R 0.58 tolerated(0.17) benign(0.045) TCGA-DK-A3IM-01 4 122728756 122728756 G A EXOSC9 Missense_Mutation p.S195N 0.11 deleterious(0.01) possibly_damaging(0.734) TCGA-DK-A3IM-01 5 112384766 112384766 G A MCC Intron 0.10 TCGA-DK-A3IM-01 5 140482387 140482387 G T PCDHB3 Missense_Mutation p.R718S 0.49 deleterious_low_confidence(0.01) benign(0.069) TCGA-DK-A3IM-01 5 140604519 140604519 G A PCDHB14 Missense_Mutation p.G481D 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A3IM-01 5 167835653 167835653 G A WWC1 Missense_Mutation p.G288R 0.08 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IM-01 5 33576989 33576989 T A ADAMTS12 Missense_Mutation p.I1048F 0.45 tolerated(0.64) benign(0.11) TCGA-DK-A3IM-01 6 1313343 1313343 C A FOXQ1 Nonsense_Mutation p.S135* 0.47 TCGA-DK-A3IM-01 6 159655154 159655154 C G FNDC1 Missense_Mutation p.P1204A 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A3IM-01 6 160517637 160517637 C T IGF2R Silent p.T2274T 0.14 TCGA-DK-A3IM-01 6 28478665 28478665 C G GPX6 Missense_Mutation p.G35A 0.53 tolerated(0.37) benign(0.003) TCGA-DK-A3IM-01 6 33232186 33232186 G C VPS52 Missense_Mutation p.Q497E 0.45 tolerated(0.54) benign(0.038) TCGA-DK-A3IM-01 6 64390062 64390062 G A PHF3 Missense_Mutation p.E136K 0.51 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IM-01 6 72957746 72957746 G C RIMS1 Missense_Mutation p.M719I 0.25 deleterious(0) benign(0.074) TCGA-DK-A3IM-01 6 72957747 72957747 G T RIMS1 Nonsense_Mutation p.E720* 0.25 TCGA-DK-A3IM-01 7 100730858 100730858 C T TRIM56 Missense_Mutation p.R89W 0.06 deleterious(0) probably_damaging(0.984) TCGA-DK-A3IM-01 7 143657849 143657849 C G OR2F1 Silent p.P262P 0.05 TCGA-DK-A3IM-01 7 151970840 151970840 C T KMT2C Missense_Mutation p.S321N 0.11 benign(0.042) TCGA-DK-A3IM-01 7 2740362 2740362 C G AMZ1 Missense_Mutation p.R93G 0.34 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IM-01 7 98592453 98592453 A G TRRAP Missense_Mutation p.K3417E 0.79 probably_damaging(0.971) TCGA-DK-A3IM-01 8 110293311 110293312 TG - NUDCD1 Frame_Shift_Del p.Q305Vfs*4 0.45 TCGA-DK-A3IM-01 8 22475219 22475219 G A CCAR2 Silent p.K667K 0.06 TCGA-DK-A3IM-01 8 2830727 2830727 G T CSMD1 Silent p.S2945S 0.04 TCGA-DK-A3IM-01 9 1056155 1056155 T G DMRT2 Intron 0.17 TCGA-DK-A3IM-01 9 107367674 107367674 G A OR13C2 Missense_Mutation p.P79S 0.97 deleterious(0.01) benign(0.022) TCGA-DK-A3IM-01 9 111665223 111665223 C A IKBKAP Splice_Site p.X584_splice 0.28 TCGA-DK-A3IM-01 9 139369743 139369743 C T SEC16A Silent p.S775S 0.10 TCGA-DK-A3IM-01 9 7103807 7103807 G A KDM4C Silent p.E849E 0.32 TCGA-DK-A3IM-01 X 104463696 104463696 C A TEX13A Missense_Mutation p.D394Y 0.86 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IM-01 X 24225885 24225885 C A ZFX Missense_Mutation p.L285I 0.08 tolerated(0.35) benign(0.201) TCGA-DK-A3IM-01 X 77912689 77912689 T A ZCCHC5 Missense_Mutation p.D410V 0.86 tolerated(0.29) benign(0.057) TCGA-DK-A3IM-01 X 7870171 7870171 G A PNPLA4 Silent p.D163D 0.88 TCGA-DK-A3IN-01 10 102267742 102267742 G C SEC31B Missense_Mutation p.H188D 0.46 tolerated(0.06) benign(0.029) TCGA-DK-A3IN-01 10 127455472 127455472 G C MMP21 Missense_Mutation p.T490S 0.17 tolerated(0.52) benign(0.023) TCGA-DK-A3IN-01 10 13164440 13164440 G C OPTN Missense_Mutation p.E279Q 0.17 tolerated(0.1) benign(0.367) TCGA-DK-A3IN-01 10 14870191 14870191 C G CDNF Missense_Mutation p.E66Q 0.19 deleterious(0.04) probably_damaging(0.978) TCGA-DK-A3IN-01 10 15120550 15120550 C G ACBD7 Silent p.L82L 0.19 TCGA-DK-A3IN-01 10 30901786 30901786 C G LYZL2 Missense_Mutation p.K160N 0.11 deleterious(0) possibly_damaging(0.793) TCGA-DK-A3IN-01 10 30901801 30901801 C T LYZL2 Silent p.A155A 0.11 TCGA-DK-A3IN-01 10 61834597 61834597 C G ANK3 Missense_Mutation p.E2014D 0.52 probably_damaging(0.935) TCGA-DK-A3IN-01 10 71716780 71716780 C G COL13A1 Silent p.V711V 0.37 TCGA-DK-A3IN-01 10 79750904 79750904 C T POLR3A Missense_Mutation p.E937K 0.58 deleterious(0.04) benign(0.082) TCGA-DK-A3IN-01 10 81373716 81373716 C T SFTPA1 Silent p.F213F 0.45 TCGA-DK-A3IN-01 10 88939998 88939998 G A FAM35A Silent p.E710E 0.43 TCGA-DK-A3IN-01 10 89720700 89720709 AGGAAACCTC - PTEN Frame_Shift_Del p.E285Kfs*3 0.20 TCGA-DK-A3IN-01 10 98155023 98155023 C T TLL2 Silent p.S549S 0.49 TCGA-DK-A3IN-01 10 98155024 98155024 G T TLL2 Nonsense_Mutation p.S549* 0.51 TCGA-DK-A3IN-01 10 98155044 98155044 C G TLL2 Missense_Mutation p.E542D 0.49 tolerated(0.92) benign(0.012) TCGA-DK-A3IN-01 11 101868383 101868383 G C KIAA1377 3'UTR 0.48 TCGA-DK-A3IN-01 11 11913630 11913630 C G USP47 Missense_Mutation p.S90C 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-DK-A3IN-01 11 119545906 119545906 G A PVRL1 Silent p.I322I 0.26 TCGA-DK-A3IN-01 11 120918374 120918374 G A TBCEL Missense_Mutation p.E91K 0.40 deleterious(0) possibly_damaging(0.719) TCGA-DK-A3IN-01 11 123524527 123524527 T C SCN3B 5'UTR 0.13 TCGA-DK-A3IN-01 11 133792552 133792552 G A IGSF9B Silent p.I731I 0.44 TCGA-DK-A3IN-01 11 13732282 13732282 G A FAR1 Silent p.L196L 0.09 TCGA-DK-A3IN-01 11 13732293 13732293 G A FAR1 Missense_Mutation p.R200K 0.08 tolerated(0.16) benign(0.05) TCGA-DK-A3IN-01 11 13733312 13733312 G C FAR1 Missense_Mutation p.G242A 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 11 34113462 34113462 A G CAPRIN1 Missense_Mutation p.M522V 0.23 tolerated(0.99) benign(0.114) TCGA-DK-A3IN-01 11 4388659 4388659 C T OR52B4 Silent p.L289L 0.23 TCGA-DK-A3IN-01 11 45245797 45245797 G C PRDM11 Missense_Mutation p.E258Q 0.16 deleterious(0.02) probably_damaging(0.99) TCGA-DK-A3IN-01 11 46679081 46679081 G C ATG13 Missense_Mutation p.E202Q 0.26 deleterious(0.03) probably_damaging(0.968) TCGA-DK-A3IN-01 11 48185099 48185099 C T PTPRJ Silent p.I1216I 0.30 TCGA-DK-A3IN-01 11 57003561 57003561 G A APLNR Silent p.P306P 0.16 TCGA-DK-A3IN-01 11 58892744 58892744 C G FAM111B Missense_Mutation p.Q392E 0.23 deleterious(0.04) benign(0.109) TCGA-DK-A3IN-01 11 58893519 58893519 C G FAM111B Nonsense_Mutation p.S650* 0.16 TCGA-DK-A3IN-01 11 59190322 59190322 G C OR5A2 Silent p.L35L 0.19 TCGA-DK-A3IN-01 11 6239209 6239209 C T FAM160A2 Missense_Mutation p.R550Q 0.20 tolerated(0.49) benign(0.124) TCGA-DK-A3IN-01 11 63312136 63312136 G A RARRES3 Silent p.L54L 0.16 TCGA-DK-A3IN-01 11 64795003 64795003 C T SNX15 5'UTR 0.34 TCGA-DK-A3IN-01 11 73102216 73102216 C T RELT Silent p.R105R 0.34 TCGA-DK-A3IN-01 11 92534006 92534006 C T FAT3 Silent p.V2609V 0.52 TCGA-DK-A3IN-01 12 10145870 10145870 C G CLEC1B Missense_Mutation p.D188H 0.34 deleterious(0.01) benign(0.075) TCGA-DK-A3IN-01 12 104190738 104190738 G A NT5DC3 Silent p.C229C 0.16 TCGA-DK-A3IN-01 12 106740114 106740114 C G TCP11L2 Missense_Mutation p.Q456E 0.34 deleterious(0.03) benign(0.099) TCGA-DK-A3IN-01 12 106740204 106740204 C T TCP11L2 Missense_Mutation p.L486F 0.16 tolerated(0.4) benign(0.034) TCGA-DK-A3IN-01 12 108145485 108145485 T A PRDM4 Missense_Mutation p.N278I 0.24 tolerated_low_confidence(0.06) benign(0.02) TCGA-DK-A3IN-01 12 11183791 11183791 G C TAS2R31 Silent p.L48L 0.17 TCGA-DK-A3IN-01 12 118533368 118533368 G A VSIG10 Nonsense_Mutation p.Q111* 0.13 TCGA-DK-A3IN-01 12 120173111 120173111 C T CIT Missense_Mutation p.E1004K 0.10 deleterious(0.02) benign(0.333) TCGA-DK-A3IN-01 12 120884567 120884567 C T GATC Silent p.F63F 0.29 TCGA-DK-A3IN-01 12 120995453 120995453 G A RNF10 Nonsense_Mutation p.W312* 0.19 TCGA-DK-A3IN-01 12 122658388 122658388 C G IL31 Intron 0.21 TCGA-DK-A3IN-01 12 122716786 122716786 G A VPS33A 3'UTR 0.19 TCGA-DK-A3IN-01 12 125509837 125509837 G A BRI3BP Missense_Mutation p.R206Q 0.17 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DK-A3IN-01 12 130919336 130919336 G A RIMBP2 Silent p.F715F 0.09 TCGA-DK-A3IN-01 12 132322694 132322694 G C MMP17 Intron 0.13 TCGA-DK-A3IN-01 12 132502128 132502128 C T EP400 Silent p.I1324I 0.30 TCGA-DK-A3IN-01 12 132522554 132522554 G A EP400 Silent p.P2040P 0.37 TCGA-DK-A3IN-01 12 176472 176472 C G IQSEC3 Missense_Mutation p.L142V 0.08 tolerated_low_confidence(0.45) benign(0.016) TCGA-DK-A3IN-01 12 21325679 21325679 G C SLCO1B1 Missense_Mutation p.E60D 0.18 tolerated(1) benign(0.006) TCGA-DK-A3IN-01 12 22659717 22659717 C T C2CD5 Missense_Mutation p.G359R 0.19 deleterious(0) possibly_damaging(0.894) TCGA-DK-A3IN-01 12 22797221 22797221 C T ETNK1 Intron 0.21 TCGA-DK-A3IN-01 12 27521207 27521207 G C ARNTL2 Missense_Mutation p.R15T 0.19 tolerated(0.32) benign(0) TCGA-DK-A3IN-01 12 31256888 31256888 G A DDX11 Missense_Mutation p.R945K 0.40 tolerated_low_confidence(1) benign(0) TCGA-DK-A3IN-01 12 40637439 40637439 G A LRRK2 Missense_Mutation p.R265K 0.13 tolerated(1) benign(0) TCGA-DK-A3IN-01 12 46761069 46761069 C T SLC38A2 Silent p.L123L 0.16 TCGA-DK-A3IN-01 12 49434740 49434740 G T KMT2D Silent p.P2271P 0.19 TCGA-DK-A3IN-01 12 49578698 49578698 G A TUBA1A 3'UTR 0.19 TCGA-DK-A3IN-01 12 5154121 5154121 G C KCNA5 Missense_Mutation p.E270Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IN-01 12 51634657 51634657 C T DAZAP2 Silent p.L45L 0.19 TCGA-DK-A3IN-01 12 51759227 51759227 G A GALNT6 Silent p.F267F 0.07 TCGA-DK-A3IN-01 12 53444019 53444019 G A TENC1 Intron 0.24 TCGA-DK-A3IN-01 12 55356465 55356465 G A TESPA1 Missense_Mutation p.P406L 0.37 tolerated_low_confidence(0.18) benign(0.014) TCGA-DK-A3IN-01 12 55725670 55725670 C T OR6C3 Silent p.N62N 0.18 TCGA-DK-A3IN-01 12 56351375 56351375 G A PMEL Silent p.L238L 0.25 TCGA-DK-A3IN-01 12 56480410 56480410 G A ERBB3 Missense_Mutation p.E173K 0.31 tolerated(0.61) benign(0.002) TCGA-DK-A3IN-01 12 72666768 72666768 G C TRHDE Silent p.A70A 0.50 TCGA-DK-A3IN-01 12 75728668 75728668 G A GLIPR1L1 Missense_Mutation p.D54N 0.24 tolerated(0.58) benign(0.007) TCGA-DK-A3IN-01 12 85434370 85434370 G A LRRIQ1 Missense_Mutation p.D79N 0.14 deleterious(0.04) benign(0.023) TCGA-DK-A3IN-01 13 113900284 113900284 G T CUL4A Missense_Mutation p.Q515H 0.28 tolerated(0.09) benign(0.005) TCGA-DK-A3IN-01 13 37583842 37583842 C A SUPT20H Missense_Mutation p.M769I 0.09 tolerated(0.47) benign(0.001) TCGA-DK-A3IN-01 13 39612775 39612775 T C NHLRC3 5'UTR 0.06 TCGA-DK-A3IN-01 13 45010654 45010654 C T TSC22D1 Intron 0.43 TCGA-DK-A3IN-01 13 49039354 49039354 C A RB1 Nonsense_Mutation p.S780* 0.43 TCGA-DK-A3IN-01 13 58208645 58208645 G A PCDH17 Silent p.V655V 0.35 TCGA-DK-A3IN-01 14 21360150 21360150 G T RNASE3 Missense_Mutation p.R102I 0.34 deleterious(0.03) benign(0.012) TCGA-DK-A3IN-01 14 23886487 23886487 G A MYH7 Missense_Mutation p.S1465L 0.24 tolerated(0.1) benign(0.166) TCGA-DK-A3IN-01 14 24647296 24647296 G C REC8 Splice_Site p.X288_splice 0.24 TCGA-DK-A3IN-01 14 35008795 35008795 C T EAPP Missense_Mutation p.E14K 0.19 deleterious(0.01) possibly_damaging(0.78) TCGA-DK-A3IN-01 14 35498408 35498408 G A SRP54 3'UTR 0.27 TCGA-DK-A3IN-01 14 38016208 38016208 C T MIPOL1 3'UTR 0.29 TCGA-DK-A3IN-01 14 75230697 75230697 C T YLPM1 Nonsense_Mutation p.Q169* 0.32 TCGA-DK-A3IN-01 14 77772681 77772681 C G POMT2 Missense_Mutation p.G146A 0.22 tolerated(0.51) benign(0.005) TCGA-DK-A3IN-01 14 81609785 81609785 C G TSHR Missense_Mutation p.F461L 0.26 tolerated(0.88) benign(0.007) TCGA-DK-A3IN-01 14 89038435 89038435 G C ZC3H14 Missense_Mutation p.K99N 0.17 deleterious(0.01) possibly_damaging(0.753) TCGA-DK-A3IN-01 14 94693666 94693666 C T PPP4R4 Intron 0.26 TCGA-DK-A3IN-01 14 94754876 94754876 C G SERPINA10 Missense_Mutation p.D247H 0.22 deleterious(0) probably_damaging(0.911) TCGA-DK-A3IN-01 14 99871626 99871626 C T SETD3 Missense_Mutation p.R336K 0.32 tolerated(0.37) benign(0.076) TCGA-DK-A3IN-01 15 30926523 30926523 G A ARHGAP11B Missense_Mutation p.E150K 0.20 tolerated(0.08) benign(0.173) TCGA-DK-A3IN-01 15 31318357 31318357 C A TRPM1 Missense_Mutation p.R1222L 0.26 deleterious(0.01) probably_damaging(0.937) TCGA-DK-A3IN-01 15 42703970 42703970 G C CAPN3 Nonstop_Mutation p.*822Sext*62 0.09 TCGA-DK-A3IN-01 15 65681731 65681731 G T IGDCC4 Silent p.L809L 0.12 TCGA-DK-A3IN-01 15 67457635 67457635 G A SMAD3 Missense_Mutation p.E149K 0.15 tolerated(0.17) benign(0.005) TCGA-DK-A3IN-01 15 67473650 67473650 G A SMAD3 Missense_Mutation p.V244I 0.14 tolerated(0.12) benign(0.181) TCGA-DK-A3IN-01 15 75112416 75112416 C T LMAN1L Silent p.F250F 0.14 TCGA-DK-A3IN-01 15 78346479 78346479 C T TBC1D2B Silent p.K137K 0.22 TCGA-DK-A3IN-01 16 12009763 12009763 G A GSPT1 5'UTR 0.07 TCGA-DK-A3IN-01 16 15224527 15224527 G A RP11-1186N24.5 RNA 0.10 TCGA-DK-A3IN-01 16 15809038 15809038 C T MYH11 Missense_Mutation p.E1873K 0.12 possibly_damaging(0.535) TCGA-DK-A3IN-01 16 16110412 16110412 C T ABCC1 Silent p.L183L 0.16 TCGA-DK-A3IN-01 16 16138333 16138333 C T ABCC1 Missense_Mutation p.S279F 0.16 deleterious(0.03) possibly_damaging(0.498) TCGA-DK-A3IN-01 16 18853033 18853033 C T SMG1 Missense_Mutation p.E2184K 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-DK-A3IN-01 16 21082053 21082053 T A DNAH3 Missense_Mutation p.K1060I 0.13 deleterious(0) probably_damaging(0.943) TCGA-DK-A3IN-01 16 2495468 2495468 G A CCNF Silent p.L313L 0.17 TCGA-DK-A3IN-01 16 27460069 27460069 C G IL21R Nonsense_Mutation p.S361* 0.18 TCGA-DK-A3IN-01 16 2871063 2871063 G A PRSS21 Missense_Mutation p.D220N 0.20 tolerated(0.08) possibly_damaging(0.838) TCGA-DK-A3IN-01 16 30005479 30005479 C T HIRIP3 Silent p.L329L 0.25 TCGA-DK-A3IN-01 16 30388008 30388008 C G MYLPF Missense_Mutation p.I115M 0.12 deleterious(0.03) possibly_damaging(0.685) TCGA-DK-A3IN-01 16 30749040 30749040 C G SRCAP Missense_Mutation p.S2560C 0.28 unknown(0) TCGA-DK-A3IN-01 16 4924307 4924307 G C UBN1 Silent p.L632L 0.18 TCGA-DK-A3IN-01 16 4924679 4924679 G C UBN1 Missense_Mutation p.E756D 0.22 tolerated(0.12) benign(0.039) TCGA-DK-A3IN-01 16 4927465 4927465 G C UBN1 Missense_Mutation p.Q1115H 0.15 deleterious(0.05) possibly_damaging(0.878) TCGA-DK-A3IN-01 16 4933975 4933975 G A PPL Silent p.L1561L 0.16 TCGA-DK-A3IN-01 16 4934725 4934725 G A PPL Silent p.L1311L 0.21 TCGA-DK-A3IN-01 16 4934737 4934737 C A PPL Nonsense_Mutation p.E1307* 0.17 TCGA-DK-A3IN-01 16 57250818 57250818 G T RSPRY1 Nonsense_Mutation p.E258* 0.17 TCGA-DK-A3IN-01 16 57508744 57508744 T C DOK4 Missense_Mutation p.Y187C 0.24 deleterious(0) probably_damaging(0.964) TCGA-DK-A3IN-01 16 57789144 57789144 C T KATNB1 Silent p.F470F 0.21 TCGA-DK-A3IN-01 16 57789809 57789809 G C KATNB1 Silent p.L541L 0.29 TCGA-DK-A3IN-01 16 68909058 68909058 G A TANGO6 Silent p.A332A 0.26 TCGA-DK-A3IN-01 16 70942755 70942755 C G HYDIN Missense_Mutation p.E2672Q 0.32 possibly_damaging(0.859) TCGA-DK-A3IN-01 16 716290 716290 C T WDR90 Silent p.F1560F 0.24 TCGA-DK-A3IN-01 16 77325218 77325218 G C ADAMTS18 Missense_Mutation p.P1116R 0.16 deleterious(0.03) benign(0.349) TCGA-DK-A3IN-01 16 77328882 77328882 G C ADAMTS18 Missense_Mutation p.Q982E 0.37 tolerated(0.41) benign(0.216) TCGA-DK-A3IN-01 16 84135328 84135328 G C MBTPS1 Missense_Mutation p.L21V 0.33 tolerated_low_confidence(0.39) benign(0.01) TCGA-DK-A3IN-01 16 84256463 84256463 T C KCNG4 Missense_Mutation p.Y307C 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IN-01 16 89777137 89777137 C G VPS9D1 Missense_Mutation p.G372A 0.25 tolerated(0.81) benign(0.003) TCGA-DK-A3IN-01 16 9210534 9210534 G A C16orf72 Missense_Mutation p.G198D 0.81 deleterious(0) possibly_damaging(0.73) TCGA-DK-A3IN-01 17 15522810 15522810 G C CDRT1 Nonsense_Mutation p.S6* 0.32 TCGA-DK-A3IN-01 17 26950907 26950907 G T KIAA0100 Missense_Mutation p.H1610Q 0.04 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IN-01 17 26988906 26988906 C T SDF2 5'UTR 0.11 TCGA-DK-A3IN-01 17 27413464 27413464 G A MYO18A Silent p.L1948L 0.33 TCGA-DK-A3IN-01 17 32688819 32688819 G C CCL1 Missense_Mutation p.S58C 0.30 tolerated(0.12) probably_damaging(0.956) TCGA-DK-A3IN-01 17 32688887 32688887 G C CCL1 Missense_Mutation p.F35L 0.27 tolerated(0.09) possibly_damaging(0.465) TCGA-DK-A3IN-01 17 33807129 33807129 G A SLFN12L Silent p.L34L 0.20 TCGA-DK-A3IN-01 17 38178927 38178927 G C MED24 Silent p.L801L 0.38 TCGA-DK-A3IN-01 17 38563833 38563833 G A TOP2A Missense_Mutation p.R532C 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 17 39394331 39394331 C T KRTAP9-8 Nonsense_Mutation p.Q10* 0.14 TCGA-DK-A3IN-01 17 40021195 40021195 C T KLHL11 Nonsense_Mutation p.W143* 0.38 TCGA-DK-A3IN-01 17 41246522 41246522 C G BRCA1 Silent p.L342L 0.14 TCGA-DK-A3IN-01 17 41585174 41585174 C T DHX8 Intron 0.13 TCGA-DK-A3IN-01 17 42759437 42759437 G C CCDC43 Nonsense_Mutation p.S121* 0.18 TCGA-DK-A3IN-01 17 44630810 44630810 C T LRRC37A2 Silent p.F1618F 0.11 TCGA-DK-A3IN-01 17 48596430 48596430 C A MYCBPAP Missense_Mutation p.P293T 0.10 deleterious(0) possibly_damaging(0.804) TCGA-DK-A3IN-01 17 5086808 5086808 G T ZNF594 Missense_Mutation p.F248L 0.44 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IN-01 17 61564428 61564428 G C ACE Missense_Mutation p.E767Q 0.30 deleterious(0.02) possibly_damaging(0.748) TCGA-DK-A3IN-01 17 62499953 62499953 G A DDX5 Nonsense_Mutation p.Q159* 0.17 TCGA-DK-A3IN-01 17 67273900 67273900 G C ABCA5 Missense_Mutation p.L826V 0.36 deleterious(0.02) probably_damaging(0.913) TCGA-DK-A3IN-01 17 72281227 72281227 G C DNAI2 Missense_Mutation p.E78Q 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A3IN-01 17 74015086 74015086 C T EVPL Missense_Mutation p.R398Q 0.36 tolerated(0.29) benign(0.004) TCGA-DK-A3IN-01 17 7578239 7578239 C G TP53 Missense_Mutation p.E204Q 0.35 tolerated(0.73) benign(0.329) TCGA-DK-A3IN-01 17 7578488 7578488 C T TP53 Missense_Mutation p.D148N 0.52 tolerated(0.44) benign(0.003) TCGA-DK-A3IN-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 17 78237509 78237509 C A RNF213 Missense_Mutation p.S10Y 0.22 possibly_damaging(0.846) TCGA-DK-A3IN-01 18 21044494 21044494 C G RIOK3 Missense_Mutation p.P149A 0.55 tolerated(0.4) benign(0.001) TCGA-DK-A3IN-01 18 226868 226868 G A THOC1 Missense_Mutation p.R318C 0.62 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 18 29453426 29453426 C A TRAPPC8 Missense_Mutation p.V677F 0.14 deleterious(0) possibly_damaging(0.655) TCGA-DK-A3IN-01 18 30050350 30050350 C T GAREM Silent p.V14V 0.16 TCGA-DK-A3IN-01 18 43496060 43496060 G A EPG5 Missense_Mutation p.L1166F 0.07 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A3IN-01 18 44560549 44560549 A T TCEB3B Missense_Mutation p.S363T 0.08 tolerated(0.32) possibly_damaging(0.483) TCGA-DK-A3IN-01 19 11793406 11793406 G T ZNF833P RNA 0.30 TCGA-DK-A3IN-01 19 12296680 12296680 C G ZNF136 Silent p.L28L 0.38 TCGA-DK-A3IN-01 19 12911834 12911834 G A PRDX2 Silent p.C51C 0.14 TCGA-DK-A3IN-01 19 13340984 13340984 C G CACNA1A Missense_Mutation p.E1814Q 0.11 possibly_damaging(0.607) TCGA-DK-A3IN-01 19 15734173 15734173 C T CYP4F8 RNA 0.26 TCGA-DK-A3IN-01 19 16001219 16001219 C G CYP4F2 Missense_Mutation p.E184Q 0.21 tolerated(0.3) benign(0.024) TCGA-DK-A3IN-01 19 17411697 17411697 C T ABHD8 Silent p.K243K 0.18 TCGA-DK-A3IN-01 19 1783250 1783250 C T ATP8B3 Missense_Mutation p.G1227D 0.33 tolerated(0.44) benign(0.065) TCGA-DK-A3IN-01 19 18099287 18099287 G A KCNN1 Missense_Mutation p.E375K 0.26 tolerated(0.05) possibly_damaging(0.686) TCGA-DK-A3IN-01 19 18376060 18376060 C T KIAA1683 Missense_Mutation p.D764N 0.34 tolerated(0.06) possibly_damaging(0.782) TCGA-DK-A3IN-01 19 18543520 18543520 C G SSBP4 Missense_Mutation p.S254C 0.31 deleterious(0) probably_damaging(0.958) TCGA-DK-A3IN-01 19 21558079 21558079 C G ZNF738 Missense_Mutation p.Q46E 0.28 deleterious(0) benign(0.006) TCGA-DK-A3IN-01 19 33608848 33608848 G A GPATCH1 Missense_Mutation p.E772K 0.10 deleterious(0.03) possibly_damaging(0.501) TCGA-DK-A3IN-01 19 34856134 34856134 C T GPI Intron 0.29 TCGA-DK-A3IN-01 19 35250830 35250830 G A ZNF599 Silent p.F292F 0.29 TCGA-DK-A3IN-01 19 37677474 37677474 C G ZNF585B Missense_Mutation p.R322T 0.18 deleterious(0) benign(0.144) TCGA-DK-A3IN-01 19 39399404 39399404 C T NFKBIB Missense_Mutation p.R335C 0.32 deleterious(0.02) benign(0.004) TCGA-DK-A3IN-01 19 39399438 39399438 C G NFKBIB Nonsense_Mutation p.S346* 0.29 TCGA-DK-A3IN-01 19 41066062 41066062 C T SPTBN4 Intron 0.24 TCGA-DK-A3IN-01 19 41622139 41622139 G A CYP2F1 Missense_Mutation p.V16I 0.11 tolerated(0.44) benign(0) TCGA-DK-A3IN-01 19 45720793 45720793 C T EXOC3L2 Missense_Mutation p.R271Q 0.19 tolerated(0.14) benign(0.072) TCGA-DK-A3IN-01 19 45767943 45767943 G A MARK4 Silent p.V119V 0.28 TCGA-DK-A3IN-01 19 45975962 45975962 G A FOSB Missense_Mutation p.E237K 0.29 tolerated(0.45) possibly_damaging(0.678) TCGA-DK-A3IN-01 19 47572355 47572355 C T ZC3H4 Missense_Mutation p.E798K 0.24 unknown(0) TCGA-DK-A3IN-01 19 48244215 48244215 G A EHD2 Silent p.L386L 0.39 TCGA-DK-A3IN-01 19 49967512 49967512 G A ALDH16A1 Silent p.L441L 0.23 TCGA-DK-A3IN-01 19 50373291 50373291 G A AKT1S1 Silent p.I238I 0.31 TCGA-DK-A3IN-01 19 52887440 52887440 C G ZNF880 Missense_Mutation p.Q203E 0.27 deleterious(0.02) benign(0.013) TCGA-DK-A3IN-01 19 54973627 54973627 C T LENG9 Silent p.L383L 0.17 TCGA-DK-A3IN-01 19 55107923 55107923 C T LILRA1 Missense_Mutation p.H410Y 0.26 tolerated(0.73) benign(0.083) TCGA-DK-A3IN-01 19 55294990 55294990 G A KIR2DL1 Silent p.E290E 0.28 TCGA-DK-A3IN-01 19 55508805 55508805 G C NLRP2 Missense_Mutation p.K1000N 0.16 tolerated(0.17) benign(0.105) TCGA-DK-A3IN-01 19 5745953 5745953 C A CATSPERD Silent p.L229L 0.37 TCGA-DK-A3IN-01 19 57956341 57956341 G A ZNF749 Missense_Mutation p.E609K 0.12 deleterious(0.04) benign(0.003) TCGA-DK-A3IN-01 19 5844334 5844334 C T FUT3 Missense_Mutation p.E173K 0.32 tolerated(0.16) benign(0.093) TCGA-DK-A3IN-01 19 59063468 59063468 C T CHMP2A Missense_Mutation p.D145N 0.17 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IN-01 19 5941640 5941640 G C RANBP3 Nonsense_Mutation p.S133* 0.39 TCGA-DK-A3IN-01 19 7987050 7987050 C T SNAPC2 Missense_Mutation p.P168L 0.10 deleterious(0.02) possibly_damaging(0.481) TCGA-DK-A3IN-01 19 7992547 7992547 C T TIMM44 Missense_Mutation p.D412N 0.12 deleterious(0.05) benign(0.021) TCGA-DK-A3IN-01 19 8186262 8186262 C G FBN3 Missense_Mutation p.E1031Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IN-01 19 9001862 9001862 C G MUC16 Silent p.S13462S 0.30 TCGA-DK-A3IN-01 1 109265152 109265152 C T FNDC7 Missense_Mutation p.S265L 0.22 tolerated(0.05) benign(0.407) TCGA-DK-A3IN-01 1 11008902 11008902 C T C1orf127 Splice_Site p.X431_splice 0.29 TCGA-DK-A3IN-01 1 111674048 111674048 G A DRAM2 Silent p.I43I 0.19 TCGA-DK-A3IN-01 1 117699615 117699615 G A VTCN1 Intron 0.29 TCGA-DK-A3IN-01 1 120927085 120927085 G A FCGR1B 3'UTR 0.15 TCGA-DK-A3IN-01 1 14104976 14104976 A T PRDM2 Missense_Mutation p.E229V 0.11 probably_damaging(0.987) TCGA-DK-A3IN-01 1 1417558 1417558 G A ATAD3B Silent p.E185E 0.13 TCGA-DK-A3IN-01 1 150307520 150307520 G C PRPF3 Silent p.L281L 0.26 TCGA-DK-A3IN-01 1 152080083 152080083 C G TCHH Missense_Mutation p.Q1870H 0.29 benign(0.216) TCGA-DK-A3IN-01 1 155210915 155210915 C T GBA 5'UTR 0.47 TCGA-DK-A3IN-01 1 157745580 157745580 C T FCRL2 Missense_Mutation p.V13I 0.24 tolerated_low_confidence(0.19) benign(0.007) TCGA-DK-A3IN-01 1 159827692 159827692 C A VSIG8 Silent p.L165L 0.21 TCGA-DK-A3IN-01 1 161044087 161044087 G C PVRL4 Silent p.L359L 0.35 TCGA-DK-A3IN-01 1 167059489 167059489 G C GPA33 Silent p.L12L 0.25 TCGA-DK-A3IN-01 1 171076861 171076861 G A FMO3 Missense_Mutation p.G123S 0.30 deleterious(0) probably_damaging(0.954) TCGA-DK-A3IN-01 1 17586130 17586130 C T PADI3 Silent p.I50I 0.19 TCGA-DK-A3IN-01 1 17592186 17592186 G A PADI3 Missense_Mutation p.G127R 0.08 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IN-01 1 182555827 182555827 C G RNASEL Missense_Mutation p.D39H 0.20 deleterious(0.02) benign(0.167) TCGA-DK-A3IN-01 1 184680990 184680990 C T EDEM3 Missense_Mutation p.D520N 0.22 tolerated(0.09) benign(0.042) TCGA-DK-A3IN-01 1 203696675 203696675 G A ATP2B4 Silent p.R1095R 0.35 TCGA-DK-A3IN-01 1 205031448 205031448 T C CNTN2 Intron 0.19 TCGA-DK-A3IN-01 1 205492648 205492648 G A CDK18 Silent p.Q56Q 0.12 TCGA-DK-A3IN-01 1 207222498 207222498 C G YOD1 Missense_Mutation p.R305T 0.28 deleterious(0) possibly_damaging(0.511) TCGA-DK-A3IN-01 1 207222897 207222897 C G YOD1 Missense_Mutation p.G172A 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-DK-A3IN-01 1 21014070 21014070 C G KIF17 Missense_Mutation p.Q583H 0.26 tolerated_low_confidence(0.11) benign(0.336) TCGA-DK-A3IN-01 1 212190291 212190291 G A INTS7 Missense_Mutation p.S149L 0.30 deleterious(0) probably_damaging(0.991) TCGA-DK-A3IN-01 1 222715388 222715388 C G HHIPL2 Missense_Mutation p.D362H 0.24 deleterious(0) probably_damaging(0.962) TCGA-DK-A3IN-01 1 222716949 222716949 C G HHIPL2 Missense_Mutation p.E302Q 0.27 deleterious(0.05) probably_damaging(0.975) TCGA-DK-A3IN-01 1 222717298 222717298 C T HHIPL2 Silent p.L185L 0.30 TCGA-DK-A3IN-01 1 224321837 224321837 G C FBXO28 Missense_Mutation p.E147Q 0.26 deleterious(0) possibly_damaging(0.778) TCGA-DK-A3IN-01 1 226595555 226595555 C G PARP1 Missense_Mutation p.E26Q 0.15 tolerated(0.32) possibly_damaging(0.774) TCGA-DK-A3IN-01 1 229577644 229577644 G C NUP133 3'UTR 0.24 TCGA-DK-A3IN-01 1 23107946 23107946 G A EPHB2 Missense_Mutation p.E32K 0.35 deleterious(0) probably_damaging(0.933) TCGA-DK-A3IN-01 1 231474322 231474322 G C SPRTN Missense_Mutation p.E65Q 0.19 deleterious(0) probably_damaging(0.992) TCGA-DK-A3IN-01 1 235894422 235894422 C T LYST Missense_Mutation p.E2953K 0.38 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IN-01 1 24019138 24019138 C T RPL11 Missense_Mutation p.R16C 0.29 tolerated(0.14) benign(0.025) TCGA-DK-A3IN-01 1 2420790 2420790 G T PLCH2 Missense_Mutation p.Q433H 0.13 tolerated(0.13) benign(0.008) TCGA-DK-A3IN-01 1 24645951 24645951 C T GRHL3 5'UTR 0.23 TCGA-DK-A3IN-01 1 24673086 24673086 G C GRHL3 Missense_Mutation p.E500Q 0.20 tolerated(0.57) benign(0.347) TCGA-DK-A3IN-01 1 248790334 248790334 G C OR2T11 Missense_Mutation p.F32L 0.32 deleterious(0.02) benign(0.004) TCGA-DK-A3IN-01 1 27094291 27094291 C T ARID1A Missense_Mutation p.S1000F 0.28 unknown(0) TCGA-DK-A3IN-01 1 27100195 27100195 C T ARID1A Nonsense_Mutation p.Q1331* 0.30 TCGA-DK-A3IN-01 1 27332971 27332971 C T FAM46B Missense_Mutation p.E248K 0.33 deleterious(0.03) benign(0.025) TCGA-DK-A3IN-01 1 29319848 29319848 C G EPB41 Missense_Mutation p.Q159E 0.27 tolerated(0.37) probably_damaging(0.974) TCGA-DK-A3IN-01 1 29319941 29319941 C G EPB41 Missense_Mutation p.Q190E 0.31 tolerated(1) benign(0) TCGA-DK-A3IN-01 1 33291827 33291827 G A S100PBP Missense_Mutation p.E43K 0.20 deleterious(0.01) benign(0.221) TCGA-DK-A3IN-01 1 33292181 33292181 G C S100PBP Missense_Mutation p.D161H 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-DK-A3IN-01 1 33292214 33292214 G A S100PBP Missense_Mutation p.E172K 0.27 tolerated(0.28) benign(0.05) TCGA-DK-A3IN-01 1 33292240 33292240 G A S100PBP Silent p.E180E 0.30 TCGA-DK-A3IN-01 1 3331170 3331170 G C PRDM16 Missense_Mutation p.E884Q 0.11 deleterious(0.03) probably_damaging(0.961) TCGA-DK-A3IN-01 1 35251005 35251005 C G GJB3 Silent p.V214V 0.26 TCGA-DK-A3IN-01 1 43396370 43396370 G A SLC2A1 Missense_Mutation p.S148L 0.26 deleterious(0) possibly_damaging(0.744) TCGA-DK-A3IN-01 1 45479331 45479332 AG - UROD Frame_Shift_Del p.E115Afs*15 0.20 TCGA-DK-A3IN-01 1 47325458 47325458 C T CYP4Z2P Intron 0.15 TCGA-DK-A3IN-01 1 52442680 52442680 G T RAB3B Missense_Mutation p.S37Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IN-01 1 53416446 53416446 G C SCP2 Missense_Mutation p.Q73H 0.29 deleterious(0.01) possibly_damaging(0.78) TCGA-DK-A3IN-01 1 54692805 54692805 C T SSBP3 Silent p.%3D 0.21 TCGA-DK-A3IN-01 1 62728783 62728783 C T KANK4 Silent p.V840V 0.25 TCGA-DK-A3IN-01 1 89520378 89520378 G A GBP1 Missense_Mutation p.A551V 0.28 deleterious(0.04) benign(0.038) TCGA-DK-A3IN-01 1 91405439 91405439 C T ZNF644 Missense_Mutation p.G491E 0.24 deleterious(0.02) probably_damaging(1) TCGA-DK-A3IN-01 1 94953293 94953293 C G ABCD3 Missense_Mutation p.F337L 0.21 deleterious(0.03) possibly_damaging(0.496) TCGA-DK-A3IN-01 1 94953306 94953306 C T ABCD3 Missense_Mutation p.H342Y 0.20 tolerated(0.2) benign(0.001) TCGA-DK-A3IN-01 1 94953342 94953342 C G ABCD3 Missense_Mutation p.L354V 0.23 deleterious(0.03) benign(0.15) TCGA-DK-A3IN-01 1 9775796 9775796 C G PIK3CD Missense_Mutation p.I113M 0.25 deleterious(0.01) benign(0.148) TCGA-DK-A3IN-01 20 13765904 13765904 G T NDUFAF5 Nonsense_Mutation p.E64* 0.12 TCGA-DK-A3IN-01 20 18508212 18508212 C G SEC23B Missense_Mutation p.Q356E 0.19 deleterious(0.01) possibly_damaging(0.492) TCGA-DK-A3IN-01 20 18513307 18513307 G C SEC23B Splice_Site p.X412_splice 0.24 TCGA-DK-A3IN-01 20 279262 279262 G C ZCCHC3 Missense_Mutation p.M345I 0.22 tolerated(0.07) benign(0.049) TCGA-DK-A3IN-01 20 31647285 31647285 C G BPIFB3 Missense_Mutation p.S128C 0.30 deleterious(0.03) probably_damaging(0.983) TCGA-DK-A3IN-01 20 34797558 34797558 C G EPB41L1 Missense_Mutation p.S606C 0.27 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IN-01 20 42969880 42969880 C T R3HDML Silent p.T102T 0.32 TCGA-DK-A3IN-01 20 48500483 48500483 C T SLC9A8 Silent p.L473L 0.16 TCGA-DK-A3IN-01 20 60897153 60897153 C G LAMA5 Missense_Mutation p.E2140Q 0.32 benign(0.064) TCGA-DK-A3IN-01 20 61574870 61574870 C T GID8 Silent p.I113I 0.24 TCGA-DK-A3IN-01 21 32519223 32519223 G T TIAM1 Silent p.V1155V 0.24 TCGA-DK-A3IN-01 21 32519296 32519296 G A TIAM1 Missense_Mutation p.S1131L 0.27 deleterious(0.01) probably_damaging(0.919) TCGA-DK-A3IN-01 21 34975814 34975814 C T CRYZL1 Missense_Mutation p.E121K 0.21 tolerated(0.13) possibly_damaging(0.7) TCGA-DK-A3IN-01 21 38568048 38568048 A T TTC3 Missense_Mutation p.T1764S 0.14 tolerated(0.41) benign(0.011) TCGA-DK-A3IN-01 21 42729177 42729177 C T FAM3B 3'UTR 0.33 TCGA-DK-A3IN-01 21 43291624 43291624 G A PRDM15 Missense_Mutation p.R174C 0.29 tolerated_low_confidence(0.08) benign(0.095) TCGA-DK-A3IN-01 21 45751736 45751736 C G C21orf2 Missense_Mutation p.E179Q 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A3IN-01 21 48071903 48071903 C T PRMT2 Intron 0.12 TCGA-DK-A3IN-01 22 17447110 17447110 G A GAB4 Missense_Mutation p.L390F 0.15 deleterious(0.01) benign(0.047) TCGA-DK-A3IN-01 22 21354959 21354959 G T THAP7 Missense_Mutation p.S118R 0.06 tolerated(0.15) benign(0.043) TCGA-DK-A3IN-01 22 22724419 22724419 T A IGLV7-46 Silent p.A105A 0.63 TCGA-DK-A3IN-01 22 22842526 22842526 C T ZNF280B Missense_Mutation p.E400K 0.15 deleterious(0.02) probably_damaging(0.954) TCGA-DK-A3IN-01 22 24761541 24761541 G A SPECC1L Silent p.Q975Q 0.17 TCGA-DK-A3IN-01 22 32017073 32017073 G C PISD Silent p.L217L 0.23 TCGA-DK-A3IN-01 22 32626965 32626965 C G SLC5A4 Silent p.L373L 0.27 TCGA-DK-A3IN-01 22 35947615 35947615 C T RASD2 Nonsense_Mutation p.Q113* 0.38 TCGA-DK-A3IN-01 22 42998059 42998059 G A POLDIP3 Missense_Mutation p.P152S 0.37 tolerated(0.06) benign(0.012) TCGA-DK-A3IN-01 2 101188178 101188178 G A PDCL3 Silent p.T165T 0.11 TCGA-DK-A3IN-01 2 109087226 109087226 G C GCC2 Missense_Mutation p.E481Q 0.24 tolerated(0.17) probably_damaging(0.994) TCGA-DK-A3IN-01 2 109089346 109089346 G C GCC2 Missense_Mutation p.E951Q 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A3IN-01 2 110373639 110373639 G C SOWAHC Missense_Mutation p.G525R 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 2 111562905 111562905 A G ACOXL Missense_Mutation p.N229S 0.25 tolerated(0.41) possibly_damaging(0.502) TCGA-DK-A3IN-01 2 118588387 118588387 G C DDX18 3'UTR 0.29 TCGA-DK-A3IN-01 2 120128357 120128357 G A DBI Missense_Mutation p.D118N 0.12 tolerated(0.05) benign(0.401) TCGA-DK-A3IN-01 2 120204358 120204358 C G SCTR Missense_Mutation p.E373Q 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 2 120413951 120413951 C G PCDP1 Missense_Mutation p.Q810E 0.25 tolerated(0.25) benign(0.033) TCGA-DK-A3IN-01 2 120439083 120439083 C T TMEM177 Silent p.F218F 0.20 TCGA-DK-A3IN-01 2 138738791 138738791 C G HNMT Intron 0.22 TCGA-DK-A3IN-01 2 143913219 143913219 G A ARHGAP15 Missense_Mutation p.E54K 0.22 tolerated(0.83) benign(0.008) TCGA-DK-A3IN-01 2 149248116 149248116 G C MBD5 Missense_Mutation p.E1406Q 0.21 tolerated(0.19) unknown(0) TCGA-DK-A3IN-01 2 152112060 152112060 G C RBM43 Missense_Mutation p.F67L 0.06 deleterious(0.01) probably_damaging(0.943) TCGA-DK-A3IN-01 2 163030297 163030297 G A FAP Missense_Mutation p.A657V 0.23 deleterious(0.02) possibly_damaging(0.834) TCGA-DK-A3IN-01 2 179395756 179395756 C T TTN Missense_Mutation p.E35196K 0.25 TCGA-DK-A3IN-01 2 179421783 179421783 C G TTN Missense_Mutation p.K29366N 0.35 TCGA-DK-A3IN-01 2 1842969 1842969 C T MYT1L Missense_Mutation p.G1009E 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 2 185802674 185802674 G A ZNF804A Missense_Mutation p.E851K 0.23 tolerated(0.07) benign(0.001) TCGA-DK-A3IN-01 2 188228182 188228182 G A CALCRL Missense_Mutation p.S183L 0.28 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IN-01 2 196673469 196673469 G C DNAH7 Missense_Mutation p.F3340L 0.28 tolerated(0.71) probably_damaging(0.912) TCGA-DK-A3IN-01 2 201305422 201305422 C T SPATS2L Silent p.L235L 0.34 TCGA-DK-A3IN-01 2 202149751 202149751 C T CASP8 Nonsense_Mutation p.Q398* 0.26 TCGA-DK-A3IN-01 2 202163981 202163981 C T ALS2CR12 Missense_Mutation p.E308K 0.26 tolerated(0.15) benign(0.058) TCGA-DK-A3IN-01 2 202164015 202164015 C G ALS2CR12 Missense_Mutation p.L296F 0.25 deleterious(0.04) possibly_damaging(0.73) TCGA-DK-A3IN-01 2 202514349 202514349 G A MPP4 Nonsense_Mutation p.Q512* 0.19 TCGA-DK-A3IN-01 2 202755540 202755540 C T CDK15 Silent p.L405L 0.35 TCGA-DK-A3IN-01 2 206023472 206023472 C G PARD3B Intron 0.21 TCGA-DK-A3IN-01 2 206023538 206023538 C A PARD3B Intron 0.25 TCGA-DK-A3IN-01 2 206023564 206023564 C G PARD3B Intron 0.22 TCGA-DK-A3IN-01 2 206023598 206023598 C G PARD3B Intron 0.18 TCGA-DK-A3IN-01 2 209358298 209358298 G A PTH2R Missense_Mutation p.D523N 0.30 tolerated(0.09) benign(0.287) TCGA-DK-A3IN-01 2 217124000 217124000 G A MARCH4 3'UTR 0.21 TCGA-DK-A3IN-01 2 220337739 220337739 C G SPEG Missense_Mutation p.I1356M 0.20 benign(0.011) TCGA-DK-A3IN-01 2 228855860 228855860 C G SPHKAP Missense_Mutation p.Q1605H 0.23 tolerated(0.13) probably_damaging(0.998) TCGA-DK-A3IN-01 2 228882210 228882210 C G SPHKAP Silent p.S1120S 0.19 TCGA-DK-A3IN-01 2 231925981 231925981 C A PSMD1 Missense_Mutation p.A6D 0.17 deleterious(0.04) benign(0.325) TCGA-DK-A3IN-01 2 233431865 233431865 A G EIF4E2 Silent p.R202R 0.24 TCGA-DK-A3IN-01 2 24980905 24980905 G C NCOA1 Missense_Mutation p.M1315I 0.25 deleterious(0.01) benign(0.033) TCGA-DK-A3IN-01 2 25803618 25803618 G A DTNB Silent p.L227L 0.25 TCGA-DK-A3IN-01 2 25803620 25803620 G A DTNB Missense_Mutation p.L227F 0.27 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IN-01 2 27729747 27729747 G C GCKR Missense_Mutation p.G354A 0.29 deleterious(0.01) possibly_damaging(0.788) TCGA-DK-A3IN-01 2 37449631 37449631 C G CEBPZ Missense_Mutation p.E653Q 0.26 tolerated(0.17) benign(0.159) TCGA-DK-A3IN-01 2 44428664 44428664 G A PPM1B Missense_Mutation p.G109E 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 2 63824624 63824624 G C MDH1 Missense_Mutation p.E115D 0.38 deleterious(0.01) possibly_damaging(0.818) TCGA-DK-A3IN-01 2 73160999 73160999 G A EMX1 Silent p.K263K 0.20 TCGA-DK-A3IN-01 2 73161112 73161112 G C EMX1 3'UTR 0.21 TCGA-DK-A3IN-01 2 74043174 74043174 G C C2orf78 Missense_Mutation p.K608N 0.34 deleterious(0.02) benign(0.178) TCGA-DK-A3IN-01 2 86305287 86305287 C T POLR1A Missense_Mutation p.D403N 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 2 9484706 9484706 C A ASAP2 Missense_Mutation p.Q299K 0.26 deleterious(0.01) benign(0.403) TCGA-DK-A3IN-01 2 96047361 96047361 C T KCNIP3 Silent p.L155L 0.33 TCGA-DK-A3IN-01 2 96809649 96809649 G A DUSP2 Silent p.F286F 0.34 TCGA-DK-A3IN-01 3 102196543 102196543 C T ZPLD1 3'UTR 0.29 TCGA-DK-A3IN-01 3 10379906 10379906 C T ATP2B2 Missense_Mutation p.R1125Q 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A3IN-01 3 122152626 122152626 C T KPNA1 Missense_Mutation p.D378N 0.13 tolerated(0.13) benign(0.371) TCGA-DK-A3IN-01 3 124356151 124356151 G A KALRN Splice_Site 0.11 TCGA-DK-A3IN-01 3 125690896 125690896 C T ROPN1B 5'UTR 0.26 TCGA-DK-A3IN-01 3 133166243 133166243 G A BFSP2 Missense_Mutation p.R191K 0.35 tolerated(0.18) benign(0.426) TCGA-DK-A3IN-01 3 133374177 133374177 C T TOPBP1 Silent p.L233L 0.29 TCGA-DK-A3IN-01 3 138024920 138024920 C G NME9 Missense_Mutation p.E127Q 0.14 tolerated(0.11) benign(0.037) TCGA-DK-A3IN-01 3 139062950 139062950 C G MRPS22 Missense_Mutation p.R28G 0.14 tolerated_low_confidence(0.18) benign(0) TCGA-DK-A3IN-01 3 139087069 139087069 A G COPB2 Missense_Mutation p.L488P 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A3IN-01 3 145788840 145788840 C A PLOD2 Nonsense_Mutation p.E704* 0.14 TCGA-DK-A3IN-01 3 154855989 154855989 G C MME Missense_Mutation p.M273I 0.14 deleterious(0.04) benign(0.013) TCGA-DK-A3IN-01 3 158399781 158399781 C T GFM1 Intron 0.22 TCGA-DK-A3IN-01 3 167016138 167016138 G T ZBBX Missense_Mutation p.H612N 0.17 tolerated(0.3) benign(0.299) TCGA-DK-A3IN-01 3 169557820 169557820 C G LRRC31 Missense_Mutation p.D537H 0.27 tolerated(0.12) benign(0.001) TCGA-DK-A3IN-01 3 182566341 182566341 G C ATP11B Missense_Mutation p.E283Q 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-DK-A3IN-01 3 184026528 184026528 G A PSMD2 Silent p.P859P 0.40 TCGA-DK-A3IN-01 3 186504931 186504932 AC - EIF4A2 Frame_Shift_Del p.C265* 0.22 TCGA-DK-A3IN-01 3 195803974 195803974 G A TFRC 5'UTR 0.33 TCGA-DK-A3IN-01 3 196044975 196044975 C T TCTEX1D2 Missense_Mutation p.E17K 0.18 tolerated(0.05) benign(0.086) TCGA-DK-A3IN-01 3 21706481 21706481 C T ZNF385D Missense_Mutation p.R21H 0.25 tolerated(0.1) benign(0.001) TCGA-DK-A3IN-01 3 38042961 38042961 G A VILL Silent p.Q399Q 0.12 TCGA-DK-A3IN-01 3 38043072 38043072 G T VILL Silent p.L436L 0.14 TCGA-DK-A3IN-01 3 38043288 38043288 G A VILL Silent p.V472V 0.13 TCGA-DK-A3IN-01 3 39135477 39135477 G A WDR48 Missense_Mutation p.E620K 0.26 tolerated(0.88) benign(0.004) TCGA-DK-A3IN-01 3 39135489 39135489 G A WDR48 Missense_Mutation p.E624K 0.25 tolerated(0.68) benign(0.021) TCGA-DK-A3IN-01 3 39374203 39374203 G A CCR8 Missense_Mutation p.M127I 0.26 deleterious(0.01) benign(0.168) TCGA-DK-A3IN-01 3 39374254 39374254 G A CCR8 Silent p.V144V 0.24 TCGA-DK-A3IN-01 3 42242499 42242499 C A TRAK1 Missense_Mutation p.D460E 0.25 tolerated(0.41) possibly_damaging(0.644) TCGA-DK-A3IN-01 3 42679601 42679601 G C NKTR Missense_Mutation p.R802T 0.30 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-DK-A3IN-01 3 43121671 43121671 T C POMGNT2 Missense_Mutation p.D418G 0.17 deleterious(0.03) benign(0.383) TCGA-DK-A3IN-01 3 44968315 44968315 C T ZDHHC3 Missense_Mutation p.E284K 0.15 tolerated(0.77) benign(0.005) TCGA-DK-A3IN-01 3 52429361 52429361 C G DNAH1 Missense_Mutation p.S3669C 0.23 benign(0.009) TCGA-DK-A3IN-01 3 52651349 52651349 C T PBRM1 Missense_Mutation p.E583K 0.35 deleterious(0) possibly_damaging(0.808) TCGA-DK-A3IN-01 3 62355901 62355901 C G FEZF2 Missense_Mutation p.D413H 0.22 deleterious(0) benign(0.422) TCGA-DK-A3IN-01 3 64507920 64507920 A G ADAMTS9 Missense_Mutation p.V1912A 0.22 tolerated(0.17) benign(0.033) TCGA-DK-A3IN-01 3 72428484 72428484 C G RYBP Missense_Mutation p.E174Q 0.17 tolerated(0.06) benign(0.427) TCGA-DK-A3IN-01 3 86010672 86010672 G A CADM2 Missense_Mutation p.R275Q 0.22 tolerated(0.18) possibly_damaging(0.902) TCGA-DK-A3IN-01 3 98489793 98489793 C G ST3GAL6 Missense_Mutation p.L54V 0.14 tolerated(0.07) possibly_damaging(0.701) TCGA-DK-A3IN-01 4 100129920 100129920 G C ADH6 Missense_Mutation p.Q245E 0.17 tolerated(0.1) benign(0.002) TCGA-DK-A3IN-01 4 102251546 102251546 G C PPP3CA Intron 0.14 TCGA-DK-A3IN-01 4 114274832 114274832 G T ANK2 Missense_Mutation p.E1686D 0.06 benign(0.005) TCGA-DK-A3IN-01 4 115760536 115760536 G C NDST4 Missense_Mutation p.Q762E 0.31 deleterious(0) probably_damaging(0.976) TCGA-DK-A3IN-01 4 123542141 123542141 T A IL21 Missense_Mutation p.E9V 0.13 deleterious(0) possibly_damaging(0.744) TCGA-DK-A3IN-01 4 128851881 128851881 C T MFSD8 Missense_Mutation p.E319K 0.29 tolerated(0.07) possibly_damaging(0.793) TCGA-DK-A3IN-01 4 138451064 138451064 C T PCDH18 Missense_Mutation p.E727K 0.27 deleterious(0) probably_damaging(0.979) TCGA-DK-A3IN-01 4 153244235 153244235 G C FBXW7 Nonsense_Mutation p.S641* 0.11 TCGA-DK-A3IN-01 4 155507290 155507290 C T FGA Missense_Mutation p.E431K 0.25 deleterious(0.03) benign(0.351) TCGA-DK-A3IN-01 4 15601285 15601285 G C CC2D2A Missense_Mutation p.D1544H 0.41 deleterious(0) possibly_damaging(0.556) TCGA-DK-A3IN-01 4 16597454 16597454 C G LDB2 Missense_Mutation p.E94Q 0.57 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IN-01 4 169433557 169433557 G A PALLD Missense_Mutation p.R301Q 0.36 tolerated(0.36) benign(0.023) TCGA-DK-A3IN-01 4 174254744 174254744 G A HMGB2 Silent p.F19F 0.37 TCGA-DK-A3IN-01 4 190884260 190884260 G A FRG1 Silent p.L251L 0.21 TCGA-DK-A3IN-01 4 36152544 36152544 C G ARAP2 Missense_Mutation p.E959Q 0.33 tolerated(0.18) benign(0.435) TCGA-DK-A3IN-01 4 46060594 46060594 G A GABRG1 Missense_Mutation p.S224F 0.16 deleterious(0) benign(0.414) TCGA-DK-A3IN-01 4 499705 499705 G C PIGG Missense_Mutation p.D187H 0.14 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IN-01 4 57181751 57181751 G A KIAA1211 Missense_Mutation p.D695N 0.19 deleterious(0.01) possibly_damaging(0.728) TCGA-DK-A3IN-01 4 57367868 57367868 G C SRP72 Silent p.V619V 0.11 TCGA-DK-A3IN-01 4 87694009 87694009 G A PTPN13 Silent p.S1754S 0.14 TCGA-DK-A3IN-01 5 109191017 109191017 G C MAN2A1 Missense_Mutation p.L1051F 0.38 deleterious(0.03) probably_damaging(0.941) TCGA-DK-A3IN-01 5 1268641 1268641 C T TERT Missense_Mutation p.R859Q 0.09 tolerated(1) benign(0.016) TCGA-DK-A3IN-01 5 13823435 13823435 G C DNAH5 Silent p.L2208L 0.08 TCGA-DK-A3IN-01 5 139781720 139781720 C T ANKHD1 Silent p.V56V 0.30 TCGA-DK-A3IN-01 5 180218607 180218607 G C MGAT1 3'UTR 0.32 TCGA-DK-A3IN-01 5 180219305 180219305 G A MGAT1 Missense_Mutation p.R223W 0.35 possibly_damaging(0.67) TCGA-DK-A3IN-01 5 180219511 180219511 G C MGAT1 Missense_Mutation p.S154C 0.41 probably_damaging(0.98) TCGA-DK-A3IN-01 5 19591215 19591215 G A CDH18 Missense_Mutation p.S317L 0.06 deleterious(0.02) benign(0.24) TCGA-DK-A3IN-01 5 43298164 43298164 A G HMGCS1 Missense_Mutation p.V174A 0.20 tolerated(1) benign(0.001) TCGA-DK-A3IN-01 5 637673 637673 G C CEP72 Missense_Mutation p.D316H 0.25 tolerated(0.17) possibly_damaging(0.547) TCGA-DK-A3IN-01 5 73992515 73992515 C G HEXB Intron 0.23 TCGA-DK-A3IN-01 6 107365503 107365503 G A C6orf203 Silent p.L175L 0.37 TCGA-DK-A3IN-01 6 107780313 107780313 G A PDSS2 Silent p.I59I 0.13 TCGA-DK-A3IN-01 6 109768352 109768352 G C MICAL1 Missense_Mutation p.F717L 0.31 deleterious(0) possibly_damaging(0.497) TCGA-DK-A3IN-01 6 125284040 125284040 G A RP11-510H23.1 RNA 0.22 TCGA-DK-A3IN-01 6 131908944 131908944 G A MED23 Missense_Mutation p.R1328C 0.12 deleterious(0) probably_damaging(0.982) TCGA-DK-A3IN-01 6 144416684 144416684 C T SF3B5 5'UTR 0.19 TCGA-DK-A3IN-01 6 149854672 149854672 G C PPIL4 Missense_Mutation p.F200L 0.33 tolerated(0.66) benign(0.003) TCGA-DK-A3IN-01 6 15627595 15627595 C T DTNBP1 Missense_Mutation p.E112K 0.19 deleterious(0.01) benign(0.309) TCGA-DK-A3IN-01 6 157803263 157803263 C T ZDHHC14 Silent p.L70L 0.16 TCGA-DK-A3IN-01 6 157963684 157963684 G T ZDHHC14 Missense_Mutation p.V105L 0.34 deleterious(0) possibly_damaging(0.717) TCGA-DK-A3IN-01 6 158924831 158924831 G A TULP4 Missense_Mutation p.R1379K 0.52 deleterious_low_confidence(0.05) probably_damaging(0.977) TCGA-DK-A3IN-01 6 167709658 167709658 G A UNC93A Silent p.Q136Q 0.20 TCGA-DK-A3IN-01 6 170592977 170592977 C T DLL1 Missense_Mutation p.D464N 0.35 tolerated(0.09) benign(0.06) TCGA-DK-A3IN-01 6 17850667 17850667 C T KIF13A Missense_Mutation p.E202K 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IN-01 6 20490417 20490417 C G E2F3 Nonsense_Mutation p.S385* 0.14 TCGA-DK-A3IN-01 6 26444194 26444194 C G BTN3A3 Missense_Mutation p.S32C 0.20 tolerated(0.05) possibly_damaging(0.612) TCGA-DK-A3IN-01 6 26444498 26444498 C G BTN3A3 Missense_Mutation p.F133L 0.26 tolerated(0.3) probably_damaging(0.994) TCGA-DK-A3IN-01 6 26508197 26508197 C T BTN1A1 Silent p.L293L 0.17 TCGA-DK-A3IN-01 6 29974704 29974704 G A ZNRD1-AS1 Intron 0.12 TCGA-DK-A3IN-01 6 32164149 32164149 G A NOTCH4 Silent p.A1750A 0.30 TCGA-DK-A3IN-01 6 33372709 33372709 G - KIFC1 Frame_Shift_Del p.A280Qfs*4 0.11 TCGA-DK-A3IN-01 6 36652121 36652122 - C CDKN1A Frame_Shift_Ins p.R83Pfs*6 0.18 TCGA-DK-A3IN-01 6 43251283 43251283 G A TTBK1 Silent p.E935E 0.30 TCGA-DK-A3IN-01 6 46660831 46660831 G A TDRD6 Missense_Mutation p.E1656K 0.21 deleterious(0.03) possibly_damaging(0.694) TCGA-DK-A3IN-01 6 46660877 46660877 G A TDRD6 Missense_Mutation p.R1671K 0.22 tolerated(1) benign(0) TCGA-DK-A3IN-01 6 51889923 51889923 G A PKHD1 Missense_Mutation p.S1562F 0.35 tolerated(1) benign(0.001) TCGA-DK-A3IN-01 6 53138102 53138102 G A ELOVL5 Silent p.L206L 0.35 TCGA-DK-A3IN-01 6 86253327 86253327 T C SNX14 Silent p.Q420Q 0.27 TCGA-DK-A3IN-01 7 102257104 102257104 G A RASA4 Silent p.I11I 0.08 TCGA-DK-A3IN-01 7 106545575 106545575 C G PIK3CG Missense_Mutation p.L1018V 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A3IN-01 7 149576726 149576726 C A ATP6V0E2 Missense_Mutation p.P201H 0.29 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-DK-A3IN-01 7 150174615 150174615 C T GIMAP8 Missense_Mutation p.S582L 0.24 deleterious(0) benign(0.08) TCGA-DK-A3IN-01 7 151073831 151073831 C A NUB1 Missense_Mutation p.P559T 0.36 tolerated(0.1) benign(0.156) TCGA-DK-A3IN-01 7 27147998 27147998 C T HOXA3 Missense_Mutation p.E290K 0.12 deleterious(0.01) benign(0.176) TCGA-DK-A3IN-01 7 31121345 31121345 G A ADCYAP1R1 Missense_Mutation p.D102N 0.19 tolerated(0.22) benign(0.054) TCGA-DK-A3IN-01 7 33044890 33044890 G A FKBP9 Missense_Mutation p.R547Q 0.17 deleterious(0.04) probably_damaging(0.994) TCGA-DK-A3IN-01 7 42007389 42007389 C T GLI3 Missense_Mutation p.E746K 0.17 deleterious(0.01) benign(0.405) TCGA-DK-A3IN-01 7 44924792 44924792 C G PURB Missense_Mutation p.Q52H 0.15 deleterious(0) benign(0.075) TCGA-DK-A3IN-01 7 48391850 48391850 C T ABCA13 Missense_Mutation p.S3485L 0.19 benign(0.253) TCGA-DK-A3IN-01 7 5752476 5752476 C G RNF216 Missense_Mutation p.E618Q 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3IN-01 7 62752620 62752620 G T ZNF733P RNA 0.09 TCGA-DK-A3IN-01 7 6472552 6472552 G A DAGLB Silent p.L239L 0.46 TCGA-DK-A3IN-01 7 86569360 86569360 G C KIAA1324L Silent p.V271V 0.19 TCGA-DK-A3IN-01 7 87563851 87563851 G A ADAM22 Missense_Mutation p.R24H 0.14 tolerated_low_confidence(0.28) benign(0) TCGA-DK-A3IN-01 7 92027682 92027682 G C ANKIB1 Missense_Mutation p.D897H 0.20 deleterious_low_confidence(0.01) benign(0.002) TCGA-DK-A3IN-01 7 94057029 94057029 G C COL1A2 Missense_Mutation p.D1120H 0.23 unknown(0) TCGA-DK-A3IN-01 7 94058695 94058695 G A COL1A2 Missense_Mutation p.E1303K 0.23 unknown(0) TCGA-DK-A3IN-01 7 98256482 98256482 G T NPTX2 Silent p.A298A 0.40 TCGA-DK-A3IN-01 7 99364768 99364768 C T CYP3A4 Missense_Mutation p.E262K 0.32 tolerated(1) benign(0) TCGA-DK-A3IN-01 7 99725743 99725743 C T MBLAC1 Missense_Mutation p.S242L 0.20 tolerated(0.38) benign(0.01) TCGA-DK-A3IN-01 8 101270981 101270981 G A RNF19A Nonsense_Mutation p.Q774* 0.28 TCGA-DK-A3IN-01 8 101271310 101271310 G A RNF19A Missense_Mutation p.S664F 0.26 deleterious_low_confidence(0) benign(0.278) TCGA-DK-A3IN-01 8 110534432 110534432 G C PKHD1L1 Missense_Mutation p.E4017Q 0.35 tolerated(0.38) possibly_damaging(0.719) TCGA-DK-A3IN-01 8 126090994 126090994 C G KIAA0196 Missense_Mutation p.D233H 0.24 deleterious(0.01) possibly_damaging(0.79) TCGA-DK-A3IN-01 8 135524803 135524803 G C ZFAT Silent p.L1092L 0.25 TCGA-DK-A3IN-01 8 139164734 139164734 G A FAM135B Missense_Mutation p.H662Y 0.27 tolerated(0.75) benign(0.087) TCGA-DK-A3IN-01 8 139263175 139263175 G T FAM135B Missense_Mutation p.Q151K 0.21 deleterious(0.01) possibly_damaging(0.602) TCGA-DK-A3IN-01 8 143570748 143570748 G A BAI1 Silent p.P860P 0.17 TCGA-DK-A3IN-01 8 1893769 1893769 C G ARHGEF10 Silent p.L1115L 0.32 TCGA-DK-A3IN-01 8 31015039 31015039 C T WRN Silent p.V1325V 0.44 TCGA-DK-A3IN-01 8 37732208 37732208 G A RAB11FIP1 Missense_Mutation p.L483F 0.03 tolerated(0.11) possibly_damaging(0.65) TCGA-DK-A3IN-01 8 42978000 42978000 C A POMK Missense_Mutation p.Q345K 0.47 tolerated_low_confidence(0.64) benign(0.077) TCGA-DK-A3IN-01 8 48874078 48874078 C T MCM4 Missense_Mutation p.R25W 0.19 deleterious(0.01) benign(0.28) TCGA-DK-A3IN-01 8 55538439 55538439 C T RP1 Missense_Mutation p.S666L 0.28 tolerated(0.22) benign(0.012) TCGA-DK-A3IN-01 8 56866484 56866484 G A LYN Missense_Mutation p.R244Q 0.20 deleterious(0.01) benign(0.127) TCGA-DK-A3IN-01 8 67748054 67748054 G - SGK3 Frame_Shift_Del p.I197* 0.20 TCGA-DK-A3IN-01 8 8750149 8750149 G A MFHAS1 Silent p.L140L 0.50 TCGA-DK-A3IN-01 8 91962060 91962060 G C NECAB1 Missense_Mutation p.E296Q 0.22 tolerated(0.06) possibly_damaging(0.576) TCGA-DK-A3IN-01 8 9413865 9413865 C T TNKS Missense_Mutation p.S139L 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-DK-A3IN-01 8 95850811 95850811 C G INTS8 Missense_Mutation p.Q328E 0.28 tolerated(0.11) benign(0.204) TCGA-DK-A3IN-01 8 95885644 95885644 C T INTS8 Missense_Mutation p.A859V 0.27 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IN-01 9 107554264 107554264 G A ABCA1 Missense_Mutation p.R1925W 0.17 deleterious(0) possibly_damaging(0.676) TCGA-DK-A3IN-01 9 123593680 123593680 C T PSMD5 Missense_Mutation p.E164K 0.16 tolerated(0.87) probably_damaging(0.973) TCGA-DK-A3IN-01 9 130213641 130213641 G A RPL12 5'UTR 0.18 TCGA-DK-A3IN-01 9 130496590 130496590 G A TOR2A Silent p.I135I 0.32 TCGA-DK-A3IN-01 9 134350698 134350698 G A PRRC2B Missense_Mutation p.R1061K 0.17 tolerated(0.1) benign(0.314) TCGA-DK-A3IN-01 9 139090906 139090906 C T LHX3 Splice_Site p.X157_splice 0.56 TCGA-DK-A3IN-01 9 140002847 140002847 C G MAN1B1 Missense_Mutation p.S635W 0.17 deleterious(0) benign(0.365) TCGA-DK-A3IN-01 9 140002885 140002885 C G MAN1B1 Missense_Mutation p.Q648E 0.10 tolerated(1) benign(0.001) TCGA-DK-A3IN-01 9 18777151 18777151 G A ADAMTSL1 Missense_Mutation p.R975K 0.10 tolerated(0.78) benign(0.001) TCGA-DK-A3IN-01 9 23701419 23701419 C T ELAVL2 Missense_Mutation p.R224K 0.13 deleterious(0.01) benign(0.206) TCGA-DK-A3IN-01 9 32553939 32553939 C T NDUFB6 Missense_Mutation p.D108N 0.42 tolerated(0.06) possibly_damaging(0.651) TCGA-DK-A3IN-01 9 34971383 34971383 G C KIAA1045 Missense_Mutation p.D30H 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-DK-A3IN-01 9 34971486 34971486 G A KIAA1045 Missense_Mutation p.G64E 0.12 deleterious(0.01) benign(0.08) TCGA-DK-A3IN-01 9 34972478 34972478 G A KIAA1045 Missense_Mutation p.E172K 0.13 tolerated(0.07) benign(0.423) TCGA-DK-A3IN-01 9 35546546 35546546 G C RUSC2 Missense_Mutation p.E10Q 0.44 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IN-01 9 36118870 36118870 C T RECK Silent p.V790V 0.15 TCGA-DK-A3IN-01 9 37746482 37746482 G C FRMPD1 Missense_Mutation p.E1485Q 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A3IN-01 9 75366836 75366836 C T TMC1 Silent p.L202L 0.41 TCGA-DK-A3IN-01 9 77397292 77397292 C G TRPM6 Missense_Mutation p.L1065F 0.37 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IN-01 9 79320827 79320827 G A PRUNE2 Silent p.L2121L 0.39 TCGA-DK-A3IN-01 9 86587005 86587005 G A HNRNPK Missense_Mutation p.R249C 0.47 tolerated(0.13) benign(0.001) TCGA-DK-A3IN-01 9 91667005 91667005 G C SHC3 Silent p.L303L 0.08 TCGA-DK-A3IN-01 9 98229398 98229398 C T PTCH1 Missense_Mutation p.G854R 0.13 deleterious(0) probably_damaging(0.985) TCGA-DK-A3IN-01 X 101857613 101857613 G A ARMCX5 Missense_Mutation p.V182I 0.22 tolerated(0.15) benign(0.007) TCGA-DK-A3IN-01 X 103499060 103499060 G A ESX1 Missense_Mutation p.P94L 0.44 tolerated(0.15) possibly_damaging(0.726) TCGA-DK-A3IN-01 X 54162953 54162953 G C FAM120C Missense_Mutation p.S410C 0.24 tolerated(0.09) possibly_damaging(0.794) TCGA-DK-A3IQ-01 10 102789913 102789913 G A PDZD7 Silent p.L22L 0.14 TCGA-DK-A3IQ-01 10 106214254 106214254 G T CCDC147 Missense_Mutation p.G862V 0.15 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IQ-01 10 118321149 118321149 G A PNLIP Splice_Site p.X445_splice 0.22 TCGA-DK-A3IQ-01 10 135053307 135053307 G T VENTX Missense_Mutation p.R123S 0.08 deleterious(0) possibly_damaging(0.507) TCGA-DK-A3IQ-01 10 468809 468809 C T DIP2C Missense_Mutation p.G187R 0.13 tolerated(0.22) benign(0.154) TCGA-DK-A3IQ-01 10 55587219 55587219 G A PCDH15 Missense_Mutation p.A1434V 0.14 tolerated_low_confidence(0.12) benign(0.222) TCGA-DK-A3IQ-01 10 5567418 5567418 G A CALML3 Missense_Mutation p.E124K 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.559) TCGA-DK-A3IQ-01 10 5790413 5790413 G A FAM208B Missense_Mutation p.E1677K 0.17 tolerated(0.08) possibly_damaging(0.848) TCGA-DK-A3IQ-01 10 64950860 64950860 C T JMJD1C Missense_Mutation p.E2029K 0.16 deleterious(0.04) benign(0.144) TCGA-DK-A3IQ-01 10 74803686 74803686 C T P4HA1 Intron 0.11 TCGA-DK-A3IQ-01 10 82043687 82043687 C T MAT1A Missense_Mutation p.D93N 0.17 deleterious(0.05) benign(0.167) TCGA-DK-A3IQ-01 10 88206121 88206121 T C WAPAL Missense_Mutation p.D1067G 0.10 deleterious(0.01) possibly_damaging(0.831) TCGA-DK-A3IQ-01 10 888915 888915 C A LARP4B Missense_Mutation p.K201N 0.09 deleterious(0.02) possibly_damaging(0.893) TCGA-DK-A3IQ-01 10 95275294 95275294 A G CEP55 Missense_Mutation p.K221E 0.20 tolerated(0.1) probably_damaging(0.913) TCGA-DK-A3IQ-01 10 96162368 96162369 - A TBC1D12 5'UTR 0.20 TCGA-DK-A3IQ-01 11 108384321 108384321 C T EXPH5 Missense_Mutation p.R638K 0.14 tolerated(1) benign(0.007) TCGA-DK-A3IQ-01 11 111784264 111784264 C A HSPB2 Missense_Mutation p.S65Y 0.06 deleterious(0) possibly_damaging(0.825) TCGA-DK-A3IQ-01 11 113683113 113683113 G A USP28 Silent p.I619I 0.11 TCGA-DK-A3IQ-01 11 124310774 124310774 C A OR8B8 Missense_Mutation p.D70Y 0.08 deleterious_low_confidence(0.01) benign(0.417) TCGA-DK-A3IQ-01 11 2428020 2428020 C T TRPM5 Missense_Mutation p.R1041K 0.12 tolerated(1) possibly_damaging(0.837) TCGA-DK-A3IQ-01 11 408082 408082 G A SIGIRR Nonsense_Mutation p.Q111* 0.21 TCGA-DK-A3IQ-01 11 46567156 46567156 G C AMBRA1 Silent p.V183V 0.12 TCGA-DK-A3IQ-01 11 46567257 46567257 G A AMBRA1 Nonsense_Mutation p.Q150* 0.18 TCGA-DK-A3IQ-01 11 57457644 57457644 G A ZDHHC5 Missense_Mutation p.E176K 0.07 deleterious(0.03) benign(0.029) TCGA-DK-A3IQ-01 11 61026231 61026231 G C VWCE Silent p.L928L 0.17 TCGA-DK-A3IQ-01 11 64855481 64855481 C T ZFPL1 Silent p.F276F 0.06 TCGA-DK-A3IQ-01 11 66453742 66453742 G A SPTBN2 Intron 0.12 TCGA-DK-A3IQ-01 11 70003070 70003070 G A ANO1 Silent p.L507L 0.17 TCGA-DK-A3IQ-01 11 7022459 7022459 C G ZNF214 Missense_Mutation p.R152T 0.13 tolerated(0.06) benign(0.035) TCGA-DK-A3IQ-01 11 720214 720214 C T EPS8L2 Silent p.I106I 0.17 TCGA-DK-A3IQ-01 11 7531263 7531263 C T OLFML1 Silent p.I351I 0.10 TCGA-DK-A3IQ-01 11 92616261 92616261 C T FAT3 Silent p.R4213R 0.16 TCGA-DK-A3IQ-01 12 108006588 108006588 G A BTBD11 Missense_Mutation p.R614H 0.15 tolerated(0.12) probably_damaging(0.991) TCGA-DK-A3IQ-01 12 117698400 117698400 G C NOS1 Missense_Mutation p.S746W 0.10 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IQ-01 12 122825899 122825899 C T CLIP1 Missense_Mutation p.D618N 0.22 tolerated(0.1) probably_damaging(0.993) TCGA-DK-A3IQ-01 12 133257231 133257231 C G POLE Missense_Mutation p.D83H 0.17 deleterious(0) probably_damaging(0.977) TCGA-DK-A3IQ-01 12 24048864 24048864 C A SOX5 Missense_Mutation p.D45Y 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-DK-A3IQ-01 12 52866987 52866987 C T KRT6C Missense_Mutation p.D179N 0.12 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IQ-01 12 53044194 53044194 G A KRT2 Silent p.L243L 0.21 TCGA-DK-A3IQ-01 12 56118347 56118347 G A RDH5 3'UTR 0.12 TCGA-DK-A3IQ-01 12 58017661 58017661 C T SLC26A10 Silent p.L366L 0.13 TCGA-DK-A3IQ-01 12 62783261 62783261 A G USP15 Silent p.A508A 0.21 TCGA-DK-A3IQ-01 12 62798096 62798096 G A USP15 Missense_Mutation p.E963K 0.22 tolerated(0.16) benign(0.009) TCGA-DK-A3IQ-01 12 66770815 66770815 C T GRIP1 Silent p.L868L 0.13 TCGA-DK-A3IQ-01 12 89744602 89744603 - G DUSP6 Frame_Shift_Ins p.N201Qfs*48 0.11 TCGA-DK-A3IQ-01 12 90036059 90036059 C G ATP2B1 Missense_Mutation p.K94N 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A3IQ-01 12 93247696 93247696 G A EEA1 Missense_Mutation p.S134L 0.19 deleterious(0.01) benign(0.059) TCGA-DK-A3IQ-01 13 113532571 113532571 T A ATP11A Missense_Mutation p.F1123Y 0.04 tolerated_low_confidence(0.43) benign(0.002) TCGA-DK-A3IQ-01 13 114077230 114077230 G A ADPRHL1 Silent p.L324L 0.24 TCGA-DK-A3IQ-01 13 28834599 28834599 C T PAN3 Missense_Mutation p.H422Y 0.30 deleterious(0.03) possibly_damaging(0.892) TCGA-DK-A3IQ-01 13 32745308 32745308 G A FRY Silent p.S684S 0.38 TCGA-DK-A3IQ-01 14 100795895 100795895 C G SLC25A47 Silent p.L280L 0.23 TCGA-DK-A3IQ-01 14 24648055 24648055 G A REC8 Missense_Mutation p.R378Q 0.07 tolerated(0.38) benign(0.003) TCGA-DK-A3IQ-01 14 50845041 50845041 G A CDKL1 Intron 0.36 TCGA-DK-A3IQ-01 14 58831244 58831244 G T ARID4A Missense_Mutation p.G813C 0.25 deleterious_low_confidence(0.02) benign(0.385) TCGA-DK-A3IQ-01 15 49074365 49074365 T C CEP152 Missense_Mutation p.M462V 0.15 tolerated(0.09) benign(0.002) TCGA-DK-A3IQ-01 15 49285034 49285034 C T SECISBP2L Missense_Mutation p.E905K 0.21 tolerated(0.06) benign(0.089) TCGA-DK-A3IQ-01 15 59500904 59500904 G A MYO1E Silent p.F502F 0.05 TCGA-DK-A3IQ-01 15 90119305 90119305 C T TICRR Missense_Mutation p.S163L 0.10 deleterious(0) probably_damaging(1) TCGA-DK-A3IQ-01 15 99670051 99670051 C G SYNM Missense_Mutation p.L495V 0.12 tolerated(0.44) benign(0.013) TCGA-DK-A3IQ-01 16 1552951 1552951 C T TELO2 Missense_Mutation p.S597L 0.08 deleterious(0) benign(0.287) TCGA-DK-A3IQ-01 16 16276399 16276399 G A ABCC6 Missense_Mutation p.S706F 0.16 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IQ-01 16 2094652 2094652 G C NTHL1 Missense_Mutation p.I176M 0.07 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IQ-01 16 27460606 27460606 G A IL21R 3'UTR 0.31 TCGA-DK-A3IQ-01 16 28913966 28913966 C G ATP2A1 Missense_Mutation p.H864D 0.22 deleterious(0.03) benign(0.021) TCGA-DK-A3IQ-01 16 30129483 30129483 A T MAPK3 Missense_Mutation p.I182N 0.11 deleterious(0.01) probably_damaging(0.949) TCGA-DK-A3IQ-01 16 31341460 31341460 C A ITGAM Missense_Mutation p.A1013D 0.18 tolerated(0.14) benign(0.003) TCGA-DK-A3IQ-01 16 3293384 3293384 C T MEFV Silent p.A701A 0.17 TCGA-DK-A3IQ-01 16 3367786 3367786 G C ZNF75A Missense_Mutation p.E270Q 0.19 deleterious(0.01) probably_damaging(0.926) TCGA-DK-A3IQ-01 16 613542 613542 C T C16orf11 Missense_Mutation p.P83L 0.14 tolerated(0.1) possibly_damaging(0.859) TCGA-DK-A3IQ-01 16 67208978 67208978 G A NOL3 Missense_Mutation p.R213Q 0.15 tolerated_low_confidence(0.32) benign(0.002) TCGA-DK-A3IQ-01 16 68224692 68224692 G A NFATC3 Missense_Mutation p.R707K 0.04 tolerated(0.22) benign(0.004) TCGA-DK-A3IQ-01 16 70299548 70299548 G A AARS Missense_Mutation p.L414F 0.34 deleterious(0.02) benign(0.139) TCGA-DK-A3IQ-01 16 70562947 70562947 G A SF3B3 Missense_Mutation p.G81D 0.12 deleterious(0) possibly_damaging(0.651) TCGA-DK-A3IQ-01 16 88694357 88694357 G C ZC3H18 Missense_Mutation p.E767Q 0.15 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-DK-A3IQ-01 16 89925754 89925754 G C SPIRE2 Missense_Mutation p.R485P 0.11 tolerated(0.15) possibly_damaging(0.451) TCGA-DK-A3IQ-01 17 2601720 2601720 G A CLUH Silent p.F439F 0.36 TCGA-DK-A3IQ-01 17 2603983 2603983 T C CLUH Missense_Mutation p.I350V 0.10 tolerated(0.06) possibly_damaging(0.54) TCGA-DK-A3IQ-01 17 27889911 27889911 C T ABHD15 Missense_Mutation p.D359N 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IQ-01 17 30315444 30315444 C T SUZ12 Missense_Mutation p.L377F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A3IQ-01 17 62486958 62486958 A C POLG2 Missense_Mutation p.D308E 0.08 tolerated(0.07) benign(0.005) TCGA-DK-A3IQ-01 17 63173909 63173909 C G RGS9 Silent p.V214V 0.19 TCGA-DK-A3IQ-01 17 63534317 63534317 T C AXIN2 Intron 0.35 TCGA-DK-A3IQ-01 17 65907091 65907091 C A BPTF Missense_Mutation p.Q1031K 0.12 benign(0.026) TCGA-DK-A3IQ-01 17 72233573 72233573 C G TTYH2 Silent p.L185L 0.07 TCGA-DK-A3IQ-01 17 72781647 72781647 C T TMEM104 Silent p.L24L 0.09 TCGA-DK-A3IQ-01 17 73512921 73512921 C T TSEN54 Nonsense_Mutation p.Q51* 0.15 TCGA-DK-A3IQ-01 18 22807156 22807156 C T ZNF521 Missense_Mutation p.M242I 0.19 tolerated_low_confidence(0.17) benign(0.002) TCGA-DK-A3IQ-01 18 28908201 28908201 G C DSG1 Missense_Mutation p.G89A 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A3IQ-01 18 3880081 3880081 G A DLGAP1 5'UTR 0.20 TCGA-DK-A3IQ-01 18 67816249 67816249 G C RTTN Missense_Mutation p.L733V 0.18 deleterious(0) possibly_damaging(0.693) TCGA-DK-A3IQ-01 19 11213402 11213402 C T LDLR Nonsense_Mutation p.Q85* 0.17 TCGA-DK-A3IQ-01 19 38126225 38126225 C T ZFP30 Missense_Mutation p.G406E 0.15 deleterious(0.02) probably_damaging(1) TCGA-DK-A3IQ-01 19 38160986 38160986 G C ZNF781 Missense_Mutation p.Q22E 0.12 tolerated(0.58) possibly_damaging(0.654) TCGA-DK-A3IQ-01 19 41281341 41281341 G A MIA 5'UTR 0.16 TCGA-DK-A3IQ-01 19 44778410 44778410 G C ZNF233 Missense_Mutation p.E533Q 0.12 deleterious(0) probably_damaging(0.958) TCGA-DK-A3IQ-01 19 47729818 47729818 C T BBC3 Intron 0.33 TCGA-DK-A3IQ-01 19 58101415 58101415 C T ZIK1 Missense_Mutation p.S79F 0.14 tolerated(0.21) benign(0.01) TCGA-DK-A3IQ-01 19 8617036 8617036 C G MYO1F Missense_Mutation p.E173Q 0.05 deleterious(0.05) possibly_damaging(0.901) TCGA-DK-A3IQ-01 1 116931580 116931580 C T ATP1A1 Silent p.F231F 0.07 TCGA-DK-A3IQ-01 1 12389897 12389897 C G VPS13D Missense_Mutation p.L2737V 0.19 benign(0.14) TCGA-DK-A3IQ-01 1 153965294 153965294 A G NUP210L 3'UTR 0.10 TCGA-DK-A3IQ-01 1 154300640 154300640 G A ATP8B2 Missense_Mutation p.R41H 0.09 deleterious(0.04) benign(0) TCGA-DK-A3IQ-01 1 161823073 161823073 G A ATF6 Missense_Mutation p.R498K 0.07 deleterious(0.01) possibly_damaging(0.849) TCGA-DK-A3IQ-01 1 169512142 169512142 C G F5 Missense_Mutation p.R729T 0.16 tolerated(0.64) benign(0.004) TCGA-DK-A3IQ-01 1 17958953 17958953 C G ARHGEF10L Missense_Mutation p.I574M 0.14 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A3IQ-01 1 231471279 231471279 C G EXOC8 3'UTR 0.13 TCGA-DK-A3IQ-01 1 231471422 231471422 C G EXOC8 Missense_Mutation p.E690D 0.19 deleterious(0.01) possibly_damaging(0.831) TCGA-DK-A3IQ-01 1 24388577 24388577 C T MYOM3 Missense_Mutation p.D1265N 0.11 deleterious(0.02) benign(0.12) TCGA-DK-A3IQ-01 1 27623588 27623588 C T WDTC1 Silent p.S332S 0.24 TCGA-DK-A3IQ-01 1 27631682 27631682 G C WDTC1 Missense_Mutation p.E611Q 0.23 tolerated(0.09) possibly_damaging(0.861) TCGA-DK-A3IQ-01 1 28819542 28819542 G T PHACTR4 Nonsense_Mutation p.E688* 0.04 TCGA-DK-A3IQ-01 1 34166245 34166245 C T CSMD2 Missense_Mutation p.R1162H 0.25 tolerated(0.26) possibly_damaging(0.828) TCGA-DK-A3IQ-01 1 3640003 3640003 G A TP73 Silent p.Q234Q 0.11 TCGA-DK-A3IQ-01 1 50642770 50642770 T G ELAVL4 Nonsense_Mutation p.L104* 0.14 TCGA-DK-A3IQ-01 1 64095755 64095755 C T PGM1 Silent p.F202F 0.07 TCGA-DK-A3IQ-01 20 23966391 23966391 G T GGTLC1 Silent p.G148G 0.29 TCGA-DK-A3IQ-01 20 30525290 30525290 C A TTLL9 Missense_Mutation p.H366N 0.21 tolerated(1) benign(0.002) TCGA-DK-A3IQ-01 20 3211439 3211439 G T SLC4A11 Silent p.L450L 0.17 TCGA-DK-A3IQ-01 20 3211823 3211823 G T SLC4A11 Missense_Mutation p.F381L 0.09 tolerated(1) benign(0.012) TCGA-DK-A3IQ-01 20 33586326 33586326 G C MYH7B Missense_Mutation p.R1338P 0.08 probably_damaging(0.993) TCGA-DK-A3IQ-01 20 36959492 36959492 G A BPI Silent p.P428P 0.08 TCGA-DK-A3IQ-01 20 37182516 37182516 G C RALGAPB Missense_Mutation p.E1057Q 0.25 tolerated(0.58) benign(0.002) TCGA-DK-A3IQ-01 20 37182716 37182716 G A RALGAPB Silent p.L1123L 0.28 TCGA-DK-A3IQ-01 20 422526 422526 C A TBC1D20 Nonsense_Mutation p.E167* 0.07 TCGA-DK-A3IQ-01 20 43940280 43940280 G A RBPJL Silent p.V103V 0.40 TCGA-DK-A3IQ-01 20 60878630 60878630 G A ADRM1 Silent p.T2T 0.07 TCGA-DK-A3IQ-01 21 17443531 17443531 C G LINC00478 RNA 0.27 TCGA-DK-A3IQ-01 21 32617837 32617837 G A TIAM1 Silent p.L517L 0.23 TCGA-DK-A3IQ-01 21 47850003 47850003 G A PCNT Silent p.E2590E 0.20 TCGA-DK-A3IQ-01 21 47851509 47851509 G A PCNT Missense_Mutation p.E2711K 0.17 possibly_damaging(0.651) TCGA-DK-A3IQ-01 21 47851760 47851760 G A PCNT Silent p.L2794L 0.18 TCGA-DK-A3IQ-01 22 19164697 19164697 C G SLC25A1 Missense_Mutation p.Q154H 0.24 deleterious(0) probably_damaging(0.937) TCGA-DK-A3IQ-01 22 30403279 30403279 A G MTMR3 Missense_Mutation p.N283S 0.20 tolerated(0.15) benign(0.015) TCGA-DK-A3IQ-01 22 50192221 50192221 G A BRD1 Silent p.P590P 0.16 TCGA-DK-A3IQ-01 2 10136044 10136044 G A GRHL1 Missense_Mutation p.D513N 0.12 deleterious(0.01) benign(0.21) TCGA-DK-A3IQ-01 2 10192502 10192502 G A KLF11 Silent p.L469L 0.11 TCGA-DK-A3IQ-01 2 130951802 130951802 C T TUBA3E Missense_Mutation p.D205N 0.11 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-DK-A3IQ-01 2 141812761 141812761 G A LRP1B Silent p.L492L 0.09 TCGA-DK-A3IQ-01 2 166848189 166848189 C A SCN1A Missense_Mutation p.D1866Y 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A3IQ-01 2 170557854 170557854 C T PHOSPHO2 Missense_Mutation p.P125S 0.14 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IQ-01 2 171710417 171710417 G C GAD1 Missense_Mutation p.G433A 0.05 tolerated(0.4) benign(0.41) TCGA-DK-A3IQ-01 2 179575377 179575377 G A TTN Nonsense_Mutation p.Q9483* 0.08 TCGA-DK-A3IQ-01 2 179650463 179650470 TCTTGATC - TTN Splice_Site p.X791_splice 0.17 TCGA-DK-A3IQ-01 2 183703267 183703267 G C FRZB Missense_Mutation p.L223V 0.16 tolerated(0.1) possibly_damaging(0.772) TCGA-DK-A3IQ-01 2 183790349 183790349 C G NCKAP1 3'UTR 0.28 TCGA-DK-A3IQ-01 2 189909924 189909924 G C COL5A2 Missense_Mutation p.A1115G 0.19 unknown(0) TCGA-DK-A3IQ-01 2 190640311 190640311 G A ORMDL1 Silent p.F102F 0.10 TCGA-DK-A3IQ-01 2 201400832 201400832 G C SGOL2 Missense_Mutation p.L118F 0.08 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IQ-01 2 202539927 202539927 C T MPP4 Intron 0.54 TCGA-DK-A3IQ-01 2 233655998 233655998 C A GIGYF2 Nonsense_Mutation p.S396* 0.18 TCGA-DK-A3IQ-01 2 234669201 234669201 G T UGT1A8 Intron 0.06 TCGA-DK-A3IQ-01 2 28801013 28801013 G A PLB1 Missense_Mutation p.M491I 0.06 deleterious(0.01) probably_damaging(0.912) TCGA-DK-A3IQ-01 2 31572693 31572693 C T XDH Missense_Mutation p.R943Q 0.06 deleterious(0.01) possibly_damaging(0.867) TCGA-DK-A3IQ-01 2 37076562 37076562 C T STRN 3'UTR 0.07 TCGA-DK-A3IQ-01 2 39212886 39212886 C T SOS1 3'UTR 0.16 TCGA-DK-A3IQ-01 2 44036863 44036863 G C DYNC2LI1 Missense_Mutation p.R338T 0.22 deleterious(0) possibly_damaging(0.594) TCGA-DK-A3IQ-01 2 44036898 44036898 G C DYNC2LI1 Missense_Mutation p.D350H 0.24 deleterious(0) possibly_damaging(0.779) TCGA-DK-A3IQ-01 2 44036905 44036905 G A DYNC2LI1 Silent p.%3D 0.26 TCGA-DK-A3IQ-01 2 44040419 44040419 G A ABCG5 Missense_Mutation p.P598S 0.22 tolerated(0.13) benign(0.023) TCGA-DK-A3IQ-01 2 54876994 54876994 G A SPTBN1 Silent p.K1815K 0.17 TCGA-DK-A3IQ-01 2 69172444 69172444 G A GKN2 3'UTR 0.15 TCGA-DK-A3IQ-01 2 73315528 73315528 C G RAB11FIP5 Silent p.L406L 0.21 TCGA-DK-A3IQ-01 2 89326712 89326712 C T IGKV3-11 Missense_Mutation p.E101K 0.18 deleterious(0.01) benign(0.377) TCGA-DK-A3IQ-01 2 98744726 98744726 G A VWA3B Missense_Mutation p.V243M 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-DK-A3IQ-01 3 10362691 10362691 C T SEC13 Intron 0.19 TCGA-DK-A3IQ-01 3 122667459 122667459 G A SEMA5B Silent p.L128L 0.24 TCGA-DK-A3IQ-01 3 129290522 129290522 G C PLXND1 Silent p.V1081V 0.16 TCGA-DK-A3IQ-01 3 132948130 132948130 G C TMEM108 5'UTR 0.12 TCGA-DK-A3IQ-01 3 137888979 137888979 C G DBR1 Silent p.V153V 0.12 TCGA-DK-A3IQ-01 3 13916516 13916516 G A WNT7A Nonsense_Mutation p.Q76* 0.12 TCGA-DK-A3IQ-01 3 183442274 183442274 C T YEATS2 Missense_Mutation p.S202L 0.10 tolerated(0.05) benign(0.033) TCGA-DK-A3IQ-01 3 44636265 44636265 G C ZNF660 Missense_Mutation p.E194Q 0.19 tolerated(0.16) benign(0.01) TCGA-DK-A3IQ-01 3 44943347 44943347 G C TGM4 Missense_Mutation p.E299Q 0.15 tolerated(0.06) probably_damaging(0.989) TCGA-DK-A3IQ-01 3 49756011 49756011 C T AMIGO3 Silent p.L296L 0.18 TCGA-DK-A3IQ-01 3 49756493 49756493 C T AMIGO3 Missense_Mutation p.E136K 0.21 tolerated(0.08) probably_damaging(0.936) TCGA-DK-A3IQ-01 3 49756494 49756494 C T AMIGO3 Silent p.L135L 0.22 TCGA-DK-A3IQ-01 3 93611862 93611862 C A PROS1 Missense_Mutation p.G357V 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A3IQ-01 3 9482170 9482170 G A SETD5 Missense_Mutation p.E200K 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A3IQ-01 3 99881261 99881261 G A CMSS1 Missense_Mutation p.E114K 0.20 deleterious(0) probably_damaging(0.911) TCGA-DK-A3IQ-01 4 126237764 126237764 G C FAT4 Silent p.T66T 0.11 TCGA-DK-A3IQ-01 4 2934873 2934873 G C MFSD10 Missense_Mutation p.S111C 0.15 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IQ-01 4 2934901 2934901 G A MFSD10 Silent p.L102L 0.07 TCGA-DK-A3IQ-01 4 36195235 36195235 C A ARAP2 Missense_Mutation p.D508Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IQ-01 4 42403249 42403249 G C SHISA3 Silent p.T166T 0.12 TCGA-DK-A3IQ-01 4 76570589 76570589 C A G3BP2 3'UTR 0.07 TCGA-DK-A3IQ-01 5 125813438 125813438 C A GRAMD3 Missense_Mutation p.L196I 0.24 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IQ-01 5 132198223 132198223 T C GDF9 Silent p.L141L 0.28 TCGA-DK-A3IQ-01 5 134023941 134023941 C T SEC24A Nonsense_Mutation p.Q559* 0.24 TCGA-DK-A3IQ-01 5 140175188 140175188 G T PCDHA2 Silent p.V213V 0.25 TCGA-DK-A3IQ-01 5 140782758 140782758 G T PCDHGA9 Missense_Mutation p.R80L 0.13 deleterious_low_confidence(0.03) benign(0.316) TCGA-DK-A3IQ-01 5 140782853 140782853 G C PCDHGA9 Missense_Mutation p.D112H 0.23 deleterious_low_confidence(0.01) benign(0.444) TCGA-DK-A3IQ-01 5 168100246 168100246 T C SLIT3 Silent p.P1259P 0.25 TCGA-DK-A3IQ-01 5 176696618 176696618 G C NSD1 Missense_Mutation p.E1773D 0.05 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IQ-01 5 177690246 177690246 G A COL23A1 Missense_Mutation p.T201I 0.24 tolerated(0.09) probably_damaging(0.995) TCGA-DK-A3IQ-01 5 36049133 36049133 C G UGT3A2 Missense_Mutation p.R234T 0.20 deleterious(0.02) probably_damaging(0.954) TCGA-DK-A3IQ-01 5 36049523 36049523 C T UGT3A2 Splice_Site p.X104_splice 0.17 TCGA-DK-A3IQ-01 5 45303768 45303768 G A HCN1 Silent p.H517H 0.09 TCGA-DK-A3IQ-01 5 52361774 52361774 C T ITGA2 Missense_Mutation p.S637F 0.20 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IQ-01 5 66259613 66259613 G C MAST4 Intron 0.25 TCGA-DK-A3IQ-01 5 95116086 95116086 C - RHOBTB3 Frame_Shift_Del p.L472Cfs*4 0.17 TCGA-DK-A3IQ-01 5 9629539 9629539 C T TAS2R1 Silent p.G202G 0.24 TCGA-DK-A3IQ-01 6 100911253 100911253 G A SIM1 Missense_Mutation p.S31L 0.17 deleterious(0.01) benign(0.216) TCGA-DK-A3IQ-01 6 10796367 10796367 T G MAK Missense_Mutation p.Q336P 0.10 tolerated(0.13) benign(0.001) TCGA-DK-A3IQ-01 6 116436852 116436852 A G NT5DC1 Splice_Site p.X122_splice 0.27 TCGA-DK-A3IQ-01 6 137330458 137330458 C T IL20RA Missense_Mutation p.R192K 0.12 tolerated(0.95) benign(0.1) TCGA-DK-A3IQ-01 6 1390560 1390560 C A FOXF2 Silent p.I126I 0.21 TCGA-DK-A3IQ-01 6 1390569 1390569 C A FOXF2 Missense_Mutation p.F129L 0.16 deleterious(0) benign(0.401) TCGA-DK-A3IQ-01 6 139583802 139583802 C G TXLNB Missense_Mutation p.E266Q 0.23 deleterious(0.05) probably_damaging(0.985) TCGA-DK-A3IQ-01 6 144416498 144416498 T C SF3B5 Missense_Mutation p.H46R 0.21 deleterious(0.01) benign(0.376) TCGA-DK-A3IQ-01 6 159654497 159654497 C T FNDC1 Missense_Mutation p.R985W 0.18 deleterious_low_confidence(0) unknown(0) TCGA-DK-A3IQ-01 6 29274561 29274561 C T OR14J1 Missense_Mutation p.T32I 0.15 tolerated(1) benign(0.003) TCGA-DK-A3IQ-01 6 30029223 30029223 G C ZNRD1 5'UTR 0.16 TCGA-DK-A3IQ-01 6 31922614 31922614 C G NELFE Missense_Mutation p.E154Q 0.15 tolerated_low_confidence(0.21) benign(0.129) TCGA-DK-A3IQ-01 6 32015617 32015617 C T TNXB 5'Flank 0.21 TCGA-DK-A3IQ-01 6 33271748 33271748 C T TAPBP Missense_Mutation p.C440Y 0.13 deleterious(0.05) benign(0.037) TCGA-DK-A3IQ-01 6 35426107 35426107 C T FANCE Nonsense_Mutation p.Q335* 0.22 TCGA-DK-A3IQ-01 6 35923092 35923092 G C SLC26A8 Nonsense_Mutation p.S690* 0.06 TCGA-DK-A3IQ-01 6 41738604 41738604 G T FRS3 Missense_Mutation p.P411H 0.20 tolerated(0.24) possibly_damaging(0.868) TCGA-DK-A3IQ-01 6 42146620 42146620 C T GUCA1A Silent p.D144D 0.18 TCGA-DK-A3IQ-01 6 43181255 43181255 C T CUL9 Missense_Mutation p.S1813L 0.15 deleterious(0.04) benign(0.257) TCGA-DK-A3IQ-01 6 46607286 46607286 C A CYP39A1 Nonsense_Mutation p.E145* 0.09 TCGA-DK-A3IQ-01 6 46607298 46607298 C T CYP39A1 Missense_Mutation p.E141K 0.08 tolerated(0.27) benign(0.085) TCGA-DK-A3IQ-01 7 107329646 107329646 G A SLC26A4 Splice_Site p.X383_splice 0.14 TCGA-DK-A3IQ-01 7 122130270 122130270 C A CADPS2 Missense_Mutation p.D573Y 0.04 deleterious(0) possibly_damaging(0.453) TCGA-DK-A3IQ-01 7 17879515 17879515 C T SNX13 Missense_Mutation p.R425K 0.12 tolerated(1) benign(0.001) TCGA-DK-A3IQ-01 7 37252967 37252967 C T ELMO1 Missense_Mutation p.M309I 0.12 deleterious(0.03) possibly_damaging(0.771) TCGA-DK-A3IQ-01 7 43485074 43485074 C A HECW1 Missense_Mutation p.P768Q 0.12 tolerated_low_confidence(0.72) benign(0.002) TCGA-DK-A3IQ-01 7 75625767 75625767 C T STYXL1 3'UTR 0.16 TCGA-DK-A3IQ-01 8 113353795 113353795 G C CSMD3 Missense_Mutation p.S2188C 0.17 deleterious(0.05) possibly_damaging(0.676) TCGA-DK-A3IQ-01 8 113353910 113353910 G A CSMD3 Missense_Mutation p.H2150Y 0.21 tolerated(0.05) benign(0.241) TCGA-DK-A3IQ-01 8 124383930 124383930 C A ATAD2 Silent p.L172L 0.12 TCGA-DK-A3IQ-01 8 133851656 133851656 G A PHF20L1 Missense_Mutation p.R739H 0.14 tolerated(0.13) benign(0.39) TCGA-DK-A3IQ-01 8 139163874 139163874 C A FAM135B Missense_Mutation p.R948S 0.19 tolerated(0.74) benign(0.001) TCGA-DK-A3IQ-01 8 144811408 144811408 T C FAM83H Missense_Mutation p.Y178C 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A3IQ-01 8 49831338 49831338 C G SNAI2 3'UTR 0.29 TCGA-DK-A3IQ-01 9 115950730 115950730 A G FKBP15 Silent p.T405T 0.12 TCGA-DK-A3IQ-01 9 137293529 137293529 C G RXRA Missense_Mutation p.S27C 0.30 tolerated_low_confidence(0.06) benign(0.423) TCGA-DK-A3IQ-01 9 17502622 17502622 A T CNTLN Missense_Mutation p.Y1398F 0.20 tolerated(0.09) possibly_damaging(0.671) TCGA-DK-A3IQ-01 9 2088542 2088542 C A SMARCA2 Missense_Mutation p.L938I 0.10 possibly_damaging(0.694) TCGA-DK-A3IQ-01 9 26995683 26995683 C T LRRC19 Missense_Mutation p.E317K 0.10 deleterious(0) possibly_damaging(0.651) TCGA-DK-A3IQ-01 9 79959136 79959136 C T VPS13A Missense_Mutation p.P2365L 0.20 tolerated(0.06) benign(0.077) TCGA-DK-A3IQ-01 X 100656704 100656704 C G GLA Missense_Mutation p.D155H 0.41 deleterious(0) probably_damaging(0.977) TCGA-DK-A3IQ-01 X 132162154 132162154 C A USP26 Missense_Mutation p.R32I 0.26 tolerated(0.07) benign(0.002) TCGA-DK-A3IQ-01 X 21613156 21613156 G A CNKSR2 Missense_Mutation p.R632H 0.50 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IQ-01 X 38156638 38156638 G C RPGR Missense_Mutation p.S438C 0.33 probably_damaging(0.96) TCGA-DK-A3IQ-01 X 44942004 44942004 G A KDM6A Missense_Mutation p.G1085E 0.35 deleterious(0) benign(0.356) TCGA-DK-A3IQ-01 X 48933234 48933234 C A WDR45 Missense_Mutation p.R233L 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 10 104378820 104378820 C T SUFU Intron 0.31 TCGA-DK-A3IS-01 10 105763061 105763061 C G SLK Missense_Mutation p.L709V 0.62 tolerated(0.4) benign(0.007) TCGA-DK-A3IS-01 10 1070566 1070566 G A IDI2 Missense_Mutation p.A33V 0.06 tolerated(0.16) benign(0.339) TCGA-DK-A3IS-01 10 114192016 114192016 C G ZDHHC6 Missense_Mutation p.D374H 0.26 deleterious(0.04) possibly_damaging(0.483) TCGA-DK-A3IS-01 10 135204914 135204914 C T RP11-108K14.8 Nonsense_Mutation p.Q37* 0.38 TCGA-DK-A3IS-01 10 50532111 50532111 G A C10orf71 Silent p.R507R 0.31 TCGA-DK-A3IS-01 10 60148581 60148581 T G TFAM Splice_Site p.X147_splice 0.31 TCGA-DK-A3IS-01 10 64968350 64968350 G A JMJD1C Nonsense_Mutation p.Q1027* 0.28 TCGA-DK-A3IS-01 10 64968353 64968353 G A JMJD1C Missense_Mutation p.L1026F 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IS-01 10 70044041 70044041 G A PBLD Nonsense_Mutation p.Q254* 0.35 TCGA-DK-A3IS-01 10 81072474 81072474 G A ZMIZ1 Missense_Mutation p.D1058N 0.32 unknown(0) TCGA-DK-A3IS-01 10 88446870 88446870 C T LDB3 Missense_Mutation p.S245L 0.25 tolerated(0.21) probably_damaging(0.978) TCGA-DK-A3IS-01 10 96116974 96116974 G C NOC3L Missense_Mutation p.I155M 0.56 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IS-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.70 TCGA-DK-A3IS-01 11 102195686 102195686 G C BIRC3 Missense_Mutation p.R149T 0.36 deleterious(0.03) benign(0.342) TCGA-DK-A3IS-01 11 102980483 102980483 C G DYNC2H1 Missense_Mutation p.I60M 0.57 benign(0.012) TCGA-DK-A3IS-01 11 108383904 108383904 T A EXPH5 Missense_Mutation p.D777V 0.41 deleterious(0) probably_damaging(0.959) TCGA-DK-A3IS-01 11 111946331 111946331 G T C11orf57 Silent p.L11L 0.45 TCGA-DK-A3IS-01 11 118416128 118416128 G C IFT46 Nonsense_Mutation p.S323* 0.59 TCGA-DK-A3IS-01 11 119003647 119003647 G T HINFP Nonsense_Mutation p.E317* 0.29 TCGA-DK-A3IS-01 11 122817430 122817430 G A C11orf63 Missense_Mutation p.R620H 0.17 deleterious(0) possibly_damaging(0.498) TCGA-DK-A3IS-01 11 122931883 122931883 C T HSPA8 Silent p.L50L 0.30 TCGA-DK-A3IS-01 11 123900527 123900527 C T OR10G8 Silent p.F66F 0.31 TCGA-DK-A3IS-01 11 126294664 126294664 G T KIRREL3 Silent p.L716L 0.29 TCGA-DK-A3IS-01 11 130058506 130058506 C T ST14 Missense_Mutation p.S108F 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-DK-A3IS-01 11 130066275 130066275 C T ST14 Silent p.F385F 0.50 TCGA-DK-A3IS-01 11 132184470 132184470 G A NTM Silent p.V269V 0.11 TCGA-DK-A3IS-01 11 17757753 17757753 G A KCNC1 Silent p.L68L 0.38 TCGA-DK-A3IS-01 11 22396376 22396376 C G SLC17A6 Missense_Mutation p.L373V 0.45 deleterious(0.02) possibly_damaging(0.783) TCGA-DK-A3IS-01 11 2436597 2436597 C T TRPM5 Silent p.T411T 0.38 TCGA-DK-A3IS-01 11 27077157 27077157 G A BBOX1 Silent p.V60V 0.42 TCGA-DK-A3IS-01 11 36293222 36293222 G A COMMD9 3'Flank 0.33 TCGA-DK-A3IS-01 11 47767859 47767859 C G FNBP4 Missense_Mutation p.E332Q 0.45 deleterious(0.02) possibly_damaging(0.827) TCGA-DK-A3IS-01 11 55322235 55322235 G A OR4C15 Missense_Mutation p.M151I 0.38 tolerated_low_confidence(0.07) benign(0.292) TCGA-DK-A3IS-01 11 55594854 55594854 C T OR5L2 Missense_Mutation p.R54W 0.70 deleterious(0) benign(0.001) TCGA-DK-A3IS-01 11 60718900 60718900 C T SLC15A3 Missense_Mutation p.E42K 0.25 tolerated(0.1) benign(0.09) TCGA-DK-A3IS-01 11 6281307 6281307 G A CCKBR Missense_Mutation p.R50Q 0.42 tolerated(0.19) benign(0.002) TCGA-DK-A3IS-01 11 65268331 65268331 G A MALAT1 RNA 0.60 TCGA-DK-A3IS-01 11 66299177 66299177 G C BBS1 Missense_Mutation p.E553D 0.37 tolerated(0.13) benign(0.156) TCGA-DK-A3IS-01 11 67374422 67374422 C T NDUFV1 5'UTR 0.67 TCGA-DK-A3IS-01 11 76062117 76062117 C G PRKRIR Missense_Mutation p.E693Q 0.62 deleterious(0.04) possibly_damaging(0.888) TCGA-DK-A3IS-01 11 76062585 76062585 C G PRKRIR Missense_Mutation p.E537Q 0.32 deleterious(0.02) possibly_damaging(0.899) TCGA-DK-A3IS-01 11 78516497 78516497 G A TENM4 Silent p.C673C 0.25 TCGA-DK-A3IS-01 11 88780766 88780766 C T GRM5 Missense_Mutation p.G92D 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 11 94533413 94533413 C T AMOTL1 Nonsense_Mutation p.Q353* 0.32 TCGA-DK-A3IS-01 12 104388223 104388223 G A GLT8D2 Silent p.I219I 0.52 TCGA-DK-A3IS-01 12 105582222 105582222 G T APPL2 Missense_Mutation p.S494Y 0.46 deleterious(0) probably_damaging(0.976) TCGA-DK-A3IS-01 12 109872912 109872912 C T MYO1H Nonsense_Mutation p.Q696* 0.32 TCGA-DK-A3IS-01 12 117595695 117595695 G A FBXO21 Silent p.L507L 0.45 TCGA-DK-A3IS-01 12 118490215 118490215 C G WSB2 Missense_Mutation p.E28Q 0.42 deleterious(0) probably_damaging(0.991) TCGA-DK-A3IS-01 12 123214482 123214482 G A HCAR1 Silent p.I135I 0.50 TCGA-DK-A3IS-01 12 124415937 124415937 C G DNAH10 Silent p.L4160L 0.36 TCGA-DK-A3IS-01 12 125451375 125451375 C T DHX37 Silent p.K518K 0.38 TCGA-DK-A3IS-01 12 14975926 14975926 C T C12orf60 Silent p.F19F 0.33 TCGA-DK-A3IS-01 12 19427759 19427759 C G PLEKHA5 Silent p.V385V 0.32 TCGA-DK-A3IS-01 12 30906540 30906540 G A CAPRIN2 Missense_Mutation p.S53L 0.48 tolerated(0.16) probably_damaging(0.943) TCGA-DK-A3IS-01 12 31540565 31540565 C T DENND5B Missense_Mutation p.G1266E 0.37 tolerated(0.12) possibly_damaging(0.593) TCGA-DK-A3IS-01 12 31540607 31540607 C T DENND5B Missense_Mutation p.R1252Q 0.35 tolerated(0.63) benign(0.206) TCGA-DK-A3IS-01 12 31540637 31540637 C G DENND5B Missense_Mutation p.R1242P 0.42 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IS-01 12 51072628 51072628 G A DIP2B Missense_Mutation p.M361I 0.35 tolerated(0.2) benign(0) TCGA-DK-A3IS-01 12 52865237 52865237 C T KRT6C Missense_Mutation p.E294K 0.36 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IS-01 12 53227586 53227586 G A KRT79 Silent p.F153F 0.38 TCGA-DK-A3IS-01 12 53227664 53227664 G C KRT79 Silent p.L127L 0.38 TCGA-DK-A3IS-01 12 56137466 56137466 C G GDF11 Missense_Mutation p.D122E 0.55 deleterious(0.02) possibly_damaging(0.836) TCGA-DK-A3IS-01 12 56345848 56345848 C T DGKA Silent p.I539I 0.57 TCGA-DK-A3IS-01 12 56717846 56717846 G C PAN2 Silent p.L684L 0.56 TCGA-DK-A3IS-01 12 66531814 66531814 T C TMBIM4 Missense_Mutation p.I215V 0.30 tolerated(0.13) benign(0.252) TCGA-DK-A3IS-01 12 7177945 7177945 G A C1S Missense_Mutation p.R686H 0.39 tolerated(0.12) benign(0.086) TCGA-DK-A3IS-01 12 89997570 89997570 G C ATP2B1 Missense_Mutation p.L923V 0.42 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IS-01 13 111929934 111929934 G A ARHGEF7 Missense_Mutation p.E495K 0.32 deleterious(0.01) benign(0.377) TCGA-DK-A3IS-01 13 20608481 20608481 G A ZMYM2 Missense_Mutation p.E686K 0.37 tolerated(0.51) probably_damaging(0.989) TCGA-DK-A3IS-01 13 23909330 23909330 G A SACS Silent p.N2895N 0.57 TCGA-DK-A3IS-01 13 23915753 23915753 G A SACS Silent p.F754F 0.37 TCGA-DK-A3IS-01 13 31506889 31506889 C T TEX26 Missense_Mutation p.L13F 0.39 tolerated(0.11) benign(0.382) TCGA-DK-A3IS-01 13 32366994 32366994 G C RXFP2 Missense_Mutation p.E519Q 0.44 deleterious(0.01) probably_damaging(0.976) TCGA-DK-A3IS-01 13 38225530 38225530 C A TRPC4 Missense_Mutation p.G651C 0.55 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IS-01 13 52603133 52603133 G C UTP14C Missense_Mutation p.E65Q 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 13 75933988 75933988 G A TBC1D4 Nonsense_Mutation p.R363* 0.21 TCGA-DK-A3IS-01 13 77667465 77667465 T C MYCBP2 Missense_Mutation p.H3363R 0.05 benign(0.055) TCGA-DK-A3IS-01 13 99538841 99538841 C G DOCK9 Missense_Mutation p.R694T 0.49 tolerated(1) benign(0.001) TCGA-DK-A3IS-01 14 101349286 101349286 C T RTL1 Missense_Mutation p.A614T 0.27 tolerated(0.05) benign(0.046) TCGA-DK-A3IS-01 14 102606455 102606455 C G WDR20 Silent p.L65L 0.49 TCGA-DK-A3IS-01 14 77709324 77709324 C G TMEM63C Missense_Mutation p.F422L 0.37 deleterious(0.01) possibly_damaging(0.686) TCGA-DK-A3IS-01 14 77984460 77984460 C G SPTLC2 Missense_Mutation p.G497A 0.38 tolerated(0.12) possibly_damaging(0.612) TCGA-DK-A3IS-01 14 90437609 90437609 C T TDP1 Silent p.L250L 0.60 TCGA-DK-A3IS-01 14 94914896 94914896 G A SERPINA11 Silent p.N72N 0.43 TCGA-DK-A3IS-01 14 96991650 96991650 C G PAPOLA Missense_Mutation p.L85V 0.33 deleterious(0.04) benign(0.022) TCGA-DK-A3IS-01 15 25470278 25470278 C A SNORD115-27 3'Flank 0.57 TCGA-DK-A3IS-01 15 34544565 34544565 C T SLC12A6 Missense_Mutation p.R380H 0.37 tolerated(0.07) probably_damaging(0.967) TCGA-DK-A3IS-01 15 41624731 41624731 G C OIP5 Nonsense_Mutation p.S10* 0.49 TCGA-DK-A3IS-01 15 41763545 41763545 C T RTF1 Missense_Mutation p.R401W 0.46 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IS-01 15 44057680 44057680 C G PDIA3 Missense_Mutation p.T212S 0.41 tolerated(0.81) benign(0) TCGA-DK-A3IS-01 15 48521502 48521502 G A SLC12A1 Missense_Mutation p.E281K 0.36 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IS-01 15 50519256 50519256 G C SLC27A2 Missense_Mutation p.E446D 0.42 deleterious(0.03) possibly_damaging(0.859) TCGA-DK-A3IS-01 15 52090495 52090495 G A TMOD2 Silent p.L278L 0.31 TCGA-DK-A3IS-01 15 64048748 64048748 G A HERC1 Missense_Mutation p.T474M 0.51 probably_damaging(0.994) TCGA-DK-A3IS-01 15 65982875 65982875 C G DENND4A Missense_Mutation p.D1352H 0.43 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IS-01 15 68649618 68649618 C G ITGA11 Missense_Mutation p.G207A 0.43 tolerated(0.07) probably_damaging(1) TCGA-DK-A3IS-01 15 75668200 75668200 T C SIN3A Missense_Mutation p.I1133V 0.25 tolerated(0.27) benign(0.046) TCGA-DK-A3IS-01 15 75676654 75676654 G T SIN3A Missense_Mutation p.T1049K 0.05 deleterious(0.04) benign(0.025) TCGA-DK-A3IS-01 15 75798201 75798201 G A PTPN9 Silent p.F261F 0.34 TCGA-DK-A3IS-01 15 79603571 79603571 C G TMED3 5'UTR 0.36 TCGA-DK-A3IS-01 15 89398558 89398558 G A ACAN Silent p.V914V 0.44 TCGA-DK-A3IS-01 15 91025471 91025471 G A IQGAP1 Silent p.L1171L 0.37 TCGA-DK-A3IS-01 16 1291238 1291238 G C TPSAB1 Missense_Mutation p.R49T 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3IS-01 16 14969017 14969017 G A NOMO1 Missense_Mutation p.E727K 0.31 tolerated(0.38) benign(0.012) TCGA-DK-A3IS-01 16 19729605 19729605 G A IQCK 5'UTR 0.56 TCGA-DK-A3IS-01 16 2042986 2042986 C T SYNGR3 Silent p.G201G 0.35 TCGA-DK-A3IS-01 16 20990840 20990840 C G DNAH3 Missense_Mutation p.E2630Q 0.45 tolerated(0.22) benign(0.14) TCGA-DK-A3IS-01 16 29997583 29997583 C G TAOK2 Intron 0.33 TCGA-DK-A3IS-01 16 31383090 31383090 C T ITGAX Silent p.F715F 0.42 TCGA-DK-A3IS-01 16 3274554 3274554 C G ZNF200 Missense_Mutation p.D176H 0.06 deleterious(0.02) possibly_damaging(0.771) TCGA-DK-A3IS-01 16 4938143 4938143 C T PPL Missense_Mutation p.R825K 0.50 tolerated(0.2) benign(0.02) TCGA-DK-A3IS-01 16 66766331 66766331 G C DYNC1LI2 Silent p.L280L 0.26 TCGA-DK-A3IS-01 16 75579280 75579280 C T TMEM231 Silent p.L213L 0.38 TCGA-DK-A3IS-01 16 784662 784662 C T NARFL Intron 0.41 TCGA-DK-A3IS-01 16 81973519 81973519 C G PLCG2 Missense_Mutation p.I1112M 0.38 tolerated(0.08) benign(0.185) TCGA-DK-A3IS-01 16 82203772 82203772 G A MPHOSPH6 Silent p.A3A 0.53 TCGA-DK-A3IS-01 16 84135426 84135426 C T MBTPS1 5'UTR 0.36 TCGA-DK-A3IS-01 16 847068 847068 G C CHTF18 Missense_Mutation p.M903I 0.45 tolerated(0.28) benign(0.004) TCGA-DK-A3IS-01 16 84778635 84778635 C T USP10 Missense_Mutation p.S183L 0.48 tolerated_low_confidence(0.32) benign(0.008) TCGA-DK-A3IS-01 16 86544388 86544388 G A FOXF1 Silent p.L71L 0.56 TCGA-DK-A3IS-01 17 21319000 21319000 G A KCNJ12 Missense_Mutation p.E116K 0.22 tolerated(0.55) benign(0.001) TCGA-DK-A3IS-01 17 21730744 21730744 G A UBBP4 Missense_Mutation p.E16K 0.45 tolerated(0.23) possibly_damaging(0.822) TCGA-DK-A3IS-01 17 27038664 27038664 C T PROCA1 Silent p.T5T 0.47 TCGA-DK-A3IS-01 17 27903633 27903633 C T GIT1 Silent p.L438L 0.44 TCGA-DK-A3IS-01 17 27946116 27946116 G C CORO6 Missense_Mutation p.S138C 0.42 tolerated(0.05) benign(0.012) TCGA-DK-A3IS-01 17 3181494 3181494 C T OR3A2 Missense_Mutation p.A246T 0.38 tolerated(0.06) possibly_damaging(0.562) TCGA-DK-A3IS-01 17 34261801 34261801 C T LYZL6 Silent p.%3D 0.42 TCGA-DK-A3IS-01 17 34910697 34910697 G A GGNBP2 Missense_Mutation p.D44N 0.42 tolerated(0.06) benign(0.004) TCGA-DK-A3IS-01 17 36955630 36955630 G C PIP4K2B Silent p.L16L 0.41 TCGA-DK-A3IS-01 17 37564544 37564544 C T MED1 Silent p.L1310L 0.40 TCGA-DK-A3IS-01 17 37879820 37879820 G A ERBB2 Silent p.A705A 0.47 TCGA-DK-A3IS-01 17 38345517 38345517 C T RAPGEFL1 Missense_Mutation p.S129L 0.03 tolerated(0.07) benign(0.261) TCGA-DK-A3IS-01 17 39041067 39041067 A G KRT20 Missense_Mutation p.I124T 0.40 deleterious(0.01) probably_damaging(0.971) TCGA-DK-A3IS-01 17 39969278 39969278 C A FKBP10 5'UTR 0.42 TCGA-DK-A3IS-01 17 40370258 40370258 C T STAT5B Silent p.L360L 0.04 TCGA-DK-A3IS-01 17 41345231 41345231 G A NBR1 Missense_Mutation p.M398I 0.28 deleterious(0) possibly_damaging(0.574) TCGA-DK-A3IS-01 17 41606896 41606896 C T ETV4 Silent p.E368E 0.42 TCGA-DK-A3IS-01 17 43912040 43912040 G A CRHR1 Silent p.S415S 0.50 TCGA-DK-A3IS-01 17 47797711 47797711 G C FAM117A Missense_Mutation p.H184D 0.32 deleterious(0.02) possibly_damaging(0.843) TCGA-DK-A3IS-01 17 48133990 48133990 G A ITGA3 Missense_Mutation p.E63K 0.39 tolerated(0.71) benign(0.138) TCGA-DK-A3IS-01 17 48750918 48750918 G A ABCC3 Missense_Mutation p.G833D 0.17 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 17 48784970 48784970 C T ANKRD40 Missense_Mutation p.E16K 0.37 deleterious(0) unknown(0) TCGA-DK-A3IS-01 17 57335175 57335175 G C GDPD1 Missense_Mutation p.E184Q 0.44 tolerated(0.4) benign(0.052) TCGA-DK-A3IS-01 17 59981823 59981823 G A INTS2 Silent p.V443V 0.40 TCGA-DK-A3IS-01 17 66430741 66430741 G A WIPI1 Silent p.V216V 0.40 TCGA-DK-A3IS-01 17 67255906 67255906 G C ABCA5 Silent p.L1224L 0.35 TCGA-DK-A3IS-01 17 71197795 71197795 C T COG1 Missense_Mutation p.S610L 0.40 deleterious(0.02) benign(0.015) TCGA-DK-A3IS-01 17 73749862 73749862 C G ITGB4 Missense_Mutation p.F1375L 0.51 tolerated_low_confidence(0.1) benign(0.048) TCGA-DK-A3IS-01 17 73759154 73759154 G A GALK1 Silent p.I184I 0.41 TCGA-DK-A3IS-01 17 7577562 7577563 - T TP53 Frame_Shift_Ins p.S240Kfs*24 0.45 TCGA-DK-A3IS-01 17 76989574 76989574 C G CANT1 3'UTR 0.36 TCGA-DK-A3IS-01 17 7797534 7797534 C T CHD3 Silent p.V401V 0.83 TCGA-DK-A3IS-01 17 78237494 78237494 C T RNF213 Missense_Mutation p.S5L 0.42 benign(0.076) TCGA-DK-A3IS-01 17 79170817 79170817 C A AZI1 Silent p.L562L 0.53 TCGA-DK-A3IS-01 17 79988565 79988565 G A LRRC45 Missense_Mutation p.E633K 0.70 tolerated(0.07) benign(0.309) TCGA-DK-A3IS-01 17 80478010 80478010 C T FOXK2 Silent p.I82I 0.56 TCGA-DK-A3IS-01 18 33736426 33736426 C T ELP2 Intron 0.53 TCGA-DK-A3IS-01 18 44260398 44260398 C T ST8SIA5 Silent p.L246L 0.29 TCGA-DK-A3IS-01 18 45556270 45556270 C T ZBTB7C Silent p.L407L 0.23 TCGA-DK-A3IS-01 18 59954630 59954630 G A KIAA1468 Silent p.Q1100Q 0.61 TCGA-DK-A3IS-01 18 70417577 70417577 G A NETO1 Missense_Mutation p.R421W 0.62 deleterious(0.03) probably_damaging(0.957) TCGA-DK-A3IS-01 18 76752223 76752223 C - SALL3 Frame_Shift_Del p.V79Cfs*2 0.39 TCGA-DK-A3IS-01 19 10266565 10266565 C T DNMT1 Missense_Mutation p.D486N 0.39 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IS-01 19 10663612 10663612 G A ATG4D Missense_Mutation p.E432K 0.49 tolerated(0.13) probably_damaging(0.997) TCGA-DK-A3IS-01 19 11123777 11123777 C T SMARCA4 Silent p.I809I 0.43 TCGA-DK-A3IS-01 19 11687649 11687649 C G ACP5 Missense_Mutation p.E91Q 0.51 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A3IS-01 19 12911854 12911854 G C PRDX2 Missense_Mutation p.L45V 0.40 deleterious(0) probably_damaging(0.963) TCGA-DK-A3IS-01 19 1434776 1434778 CTC TT DAZAP1 Frame_Shift_Del p.S364* 0.24 TCGA-DK-A3IS-01 19 1438451 1438451 C G RPS15 Intron 0.43 TCGA-DK-A3IS-01 19 15806821 15806821 C T CYP4F12 Silent p.F397F 0.42 TCGA-DK-A3IS-01 19 15807291 15807291 C G CYP4F12 Missense_Mutation p.L456V 0.38 tolerated(0.16) benign(0.41) TCGA-DK-A3IS-01 19 16631645 16631645 C G CHERP Missense_Mutation p.K731N 0.42 tolerated(0.2) possibly_damaging(0.709) TCGA-DK-A3IS-01 19 17362467 17362467 C T USHBP1 Missense_Mutation p.E616K 0.36 deleterious(0) benign(0.204) TCGA-DK-A3IS-01 19 18255941 18255941 G T MAST3 Missense_Mutation p.V952F 0.41 deleterious(0.02) probably_damaging(0.926) TCGA-DK-A3IS-01 19 21990730 21990730 C T ZNF43 Silent p.E703E 0.45 TCGA-DK-A3IS-01 19 3275921 3275921 C G CELF5 Missense_Mutation p.F154L 0.58 deleterious(0.01) benign(0.22) TCGA-DK-A3IS-01 19 36209280 36209280 G T KMT2B Missense_Mutation p.E120D 0.22 unknown(0) TCGA-DK-A3IS-01 19 36233667 36233667 C G U2AF1L4 Missense_Mutation p.E147D 0.38 deleterious_low_confidence(0.02) benign(0.135) TCGA-DK-A3IS-01 19 3816707 3816707 G A ZFR2 Missense_Mutation p.R690W 0.06 deleterious(0) probably_damaging(0.97) TCGA-DK-A3IS-01 19 3938612 3938612 C T NMRK2 Silent p.L60L 0.38 TCGA-DK-A3IS-01 19 43097723 43097723 C T CEACAM8 Missense_Mutation p.E132K 0.32 tolerated(0.31) benign(0.255) TCGA-DK-A3IS-01 19 43097727 43097727 C A CEACAM8 Missense_Mutation p.M130I 0.33 tolerated(0.18) benign(0.001) TCGA-DK-A3IS-01 19 44612276 44612276 G A ZNF224 Missense_Mutation p.E655K 0.38 tolerated(0.08) benign(0.055) TCGA-DK-A3IS-01 19 45375333 45375333 C T PVRL2 Silent p.V234V 0.47 TCGA-DK-A3IS-01 19 45375398 45375398 C G PVRL2 Missense_Mutation p.S256C 0.49 deleterious(0) probably_damaging(0.95) TCGA-DK-A3IS-01 19 45899848 45899848 G A PPP1R13L Silent p.L223L 0.58 TCGA-DK-A3IS-01 19 46328437 46328437 C T SYMPK Missense_Mutation p.E828K 0.46 deleterious(0) probably_damaging(0.962) TCGA-DK-A3IS-01 19 47597706 47597706 C T ZC3H4 Silent p.R107R 0.37 TCGA-DK-A3IS-01 19 49657096 49657096 C G HRC Missense_Mutation p.G467R 0.36 tolerated(0.21) benign(0.164) TCGA-DK-A3IS-01 19 49852054 49852054 G C TEAD2 Missense_Mutation p.S218W 0.58 deleterious(0) probably_damaging(0.981) TCGA-DK-A3IS-01 19 50926888 50926888 G A SPIB Silent p.P122P 0.44 TCGA-DK-A3IS-01 19 51452112 51452112 C T KLK5 Intron 0.36 TCGA-DK-A3IS-01 19 51503318 51503318 C T KLK8 Missense_Mutation p.D188N 0.39 tolerated(0.17) benign(0.023) TCGA-DK-A3IS-01 19 53269283 53269283 G A ZNF600 Missense_Mutation p.H576Y 0.48 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IS-01 19 53384365 53384365 G A ZNF320 Silent p.F338F 0.51 TCGA-DK-A3IS-01 19 54313767 54313767 C T NLRP12 Silent p.E382E 0.38 TCGA-DK-A3IS-01 19 55494122 55494122 C G NLRP2 Missense_Mutation p.I352M 0.38 deleterious(0.01) possibly_damaging(0.747) TCGA-DK-A3IS-01 19 7986331 7986331 C G SNAPC2 Silent p.L69L 0.44 TCGA-DK-A3IS-01 19 8665898 8665898 C G ADAMTS10 Missense_Mutation p.E242Q 0.43 deleterious(0) benign(0.375) TCGA-DK-A3IS-01 19 9082528 9082528 G T MUC16 Nonsense_Mutation p.S3096* 0.53 TCGA-DK-A3IS-01 19 9082810 9082810 G A MUC16 Missense_Mutation p.S3002L 0.48 unknown(0) TCGA-DK-A3IS-01 19 9083056 9083056 G A MUC16 Missense_Mutation p.S2920L 0.53 unknown(0) TCGA-DK-A3IS-01 19 9453579 9453579 G T ZNF559 Missense_Mutation p.M484I 0.48 tolerated(0.56) benign(0) TCGA-DK-A3IS-01 19 9492184 9492184 G C ZNF177 Missense_Mutation p.E393Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IS-01 19 9868234 9868234 C A ZNF846 Nonsense_Mutation p.E507* 0.33 TCGA-DK-A3IS-01 19 9868950 9868950 C A ZNF846 Missense_Mutation p.G268V 0.40 tolerated(0.53) probably_damaging(0.988) TCGA-DK-A3IS-01 19 9869338 9869338 C T ZNF846 Missense_Mutation p.E139K 0.37 tolerated(0.61) benign(0.005) TCGA-DK-A3IS-01 1 109271379 109271379 C T FNDC7 Nonsense_Mutation p.Q499* 0.42 TCGA-DK-A3IS-01 1 117150798 117150798 G A IGSF3 Missense_Mutation p.P330S 0.44 tolerated(0.07) possibly_damaging(0.612) TCGA-DK-A3IS-01 1 117556174 117556174 G A CD101 Missense_Mutation p.D330N 0.10 tolerated(0.07) benign(0.114) TCGA-DK-A3IS-01 1 145473612 145473612 C T ANKRD34A Missense_Mutation p.S95L 0.63 deleterious(0) benign(0.131) TCGA-DK-A3IS-01 1 151261980 151261980 C G ZNF687 Silent p.L866L 0.31 TCGA-DK-A3IS-01 1 152187697 152187697 G A HRNR Silent p.H2136H 0.08 TCGA-DK-A3IS-01 1 155921970 155921970 G A ARHGEF2 Nonsense_Mutation p.R681* 0.10 TCGA-DK-A3IS-01 1 160012277 160012277 C G KCNJ10 Missense_Mutation p.E16Q 0.82 tolerated_low_confidence(0.58) benign(0.029) TCGA-DK-A3IS-01 1 160322686 160322686 G A NCSTN Missense_Mutation p.D336N 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IS-01 1 16261448 16261448 G A SPEN Missense_Mutation p.D2905N 0.49 probably_damaging(0.967) TCGA-DK-A3IS-01 1 16265210 16265210 C T SPEN Intron 0.35 TCGA-DK-A3IS-01 1 162745932 162745932 C G DDR2 Silent p.T685T 0.79 TCGA-DK-A3IS-01 1 167023459 167023459 C T GPA33 3'UTR 0.19 TCGA-DK-A3IS-01 1 17046617 17046617 C T ESPNP RNA 0.04 TCGA-DK-A3IS-01 1 173470126 173470126 C G SLC9C2 3'UTR 0.78 TCGA-DK-A3IS-01 1 19557916 19557916 C G EMC1 Missense_Mutation p.E595Q 0.26 tolerated(0.45) benign(0.14) TCGA-DK-A3IS-01 1 196857268 196857268 G A CFHR4 5'UTR 0.69 TCGA-DK-A3IS-01 1 197169253 197169253 C G ZBTB41 Missense_Mutation p.L117F 0.70 tolerated_low_confidence(0.08) possibly_damaging(0.556) TCGA-DK-A3IS-01 1 233136233 233136233 C T PCNXL2 Missense_Mutation p.E1716K 0.47 deleterious(0.02) benign(0.372) TCGA-DK-A3IS-01 1 237806719 237806719 C T RYR2 Silent p.I2438I 0.54 TCGA-DK-A3IS-01 1 237886425 237886425 C T RYR2 Intron 0.34 TCGA-DK-A3IS-01 1 25678151 25678151 G T TMEM50A Missense_Mutation p.D81Y 0.49 deleterious(0) probably_damaging(0.969) TCGA-DK-A3IS-01 1 28476921 28476921 G T PTAFR Missense_Mutation p.F204L 0.50 tolerated(0.25) benign(0.004) TCGA-DK-A3IS-01 1 28477482 28477482 G C PTAFR Silent p.L17L 0.53 TCGA-DK-A3IS-01 1 35851047 35851047 C G ZMYM4 Nonsense_Mutation p.S525* 0.38 TCGA-DK-A3IS-01 1 36788636 36788636 C T EVA1B Translation_Start_Site p.M1? 0.44 deleterious(0.01) benign(0.022) TCGA-DK-A3IS-01 1 42041338 42041338 G A HIVEP3 Missense_Mutation p.S1695F 0.52 benign(0.299) TCGA-DK-A3IS-01 1 46083736 46083736 G A NASP Missense_Mutation p.E764K 0.41 tolerated_low_confidence(0.07) benign(0.056) TCGA-DK-A3IS-01 1 51736896 51736896 C T RNF11 Silent p.L123L 0.14 TCGA-DK-A3IS-01 1 55058277 55058277 G C ACOT11 Missense_Mutation p.E124Q 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 1 60139745 60139745 C G FGGY Silent p.S508S 0.35 TCGA-DK-A3IS-01 1 75037663 75037663 G T C1orf173 Missense_Mutation p.A1244E 0.30 tolerated(0.14) probably_damaging(0.988) TCGA-DK-A3IS-01 1 91778938 91778938 G A HFM1 Missense_Mutation p.S1120L 0.05 tolerated(0.11) benign(0.009) TCGA-DK-A3IS-01 1 934921 934921 G A HES4 Missense_Mutation p.R119C 0.20 deleterious(0.02) benign(0.143) TCGA-DK-A3IS-01 20 10389350 10389350 G A MKKS Missense_Mutation p.L363F 0.40 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IS-01 20 1433191 1433191 C A NSFL1C Silent p.V246V 0.48 TCGA-DK-A3IS-01 20 2582792 2582792 G C TMC2 Missense_Mutation p.E420Q 0.56 deleterious(0.01) possibly_damaging(0.881) TCGA-DK-A3IS-01 20 42354926 42354926 C G GTSF1L Missense_Mutation p.E137Q 0.64 deleterious(0.03) benign(0.221) TCGA-DK-A3IS-01 20 44984459 44984459 G T SLC35C2 Silent p.I130I 0.24 TCGA-DK-A3IS-01 20 47260976 47260976 G C PREX1 Missense_Mutation p.S1191C 0.56 deleterious(0) probably_damaging(0.977) TCGA-DK-A3IS-01 20 47736621 47736621 C G STAU1 Missense_Mutation p.K337N 0.69 deleterious(0) possibly_damaging(0.765) TCGA-DK-A3IS-01 20 49576100 49576100 G A MOCS3 Missense_Mutation p.D241N 0.26 deleterious(0) probably_damaging(0.916) TCGA-DK-A3IS-01 20 50769825 50769825 G C ZFP64 Silent p.L302L 0.22 TCGA-DK-A3IS-01 20 5081404 5081404 C T TMEM230 3'UTR 0.35 TCGA-DK-A3IS-01 20 56090809 56090809 C G CTCFL Missense_Mutation p.D381H 0.61 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 20 5927104 5927104 C T TRMT6 Silent p.V68V 0.36 TCGA-DK-A3IS-01 20 60582637 60582637 G A TAF4 Missense_Mutation p.S647F 0.63 probably_damaging(0.996) TCGA-DK-A3IS-01 20 61910306 61910306 G C ARFGAP1 Missense_Mutation p.E196Q 0.74 tolerated(0.16) possibly_damaging(0.522) TCGA-DK-A3IS-01 20 9520184 9520184 G A PAK7 Silent p.L695L 0.39 TCGA-DK-A3IS-01 21 42752066 42752066 G C MX2 Missense_Mutation p.E189Q 0.74 tolerated(0.2) benign(0.216) TCGA-DK-A3IS-01 21 45093792 45093792 G A RRP1B Missense_Mutation p.E105K 0.85 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IS-01 21 46020560 46020560 G A KRTAP10-7 Silent p.L13L 0.39 TCGA-DK-A3IS-01 21 46841300 46841300 C A COL18A1-AS1 RNA 0.78 TCGA-DK-A3IS-01 21 47419594 47419594 G A COL6A1 Silent p.P588P 0.49 TCGA-DK-A3IS-01 21 47855826 47855826 G A PCNT Missense_Mutation p.E2921K 0.33 possibly_damaging(0.636) TCGA-DK-A3IS-01 22 18561373 18561373 G C PEX26 Splice_Site p.X77_splice 0.36 TCGA-DK-A3IS-01 22 19709361 19709361 T C SEPT5 Silent p.H277H 0.09 TCGA-DK-A3IS-01 22 19961739 19961739 C T ARVCF Missense_Mutation p.E662K 0.45 deleterious(0) probably_damaging(0.984) TCGA-DK-A3IS-01 22 21133814 21133814 G C SERPIND1 Missense_Mutation p.E72Q 0.33 deleterious(0.03) possibly_damaging(0.756) TCGA-DK-A3IS-01 22 22453585 22453585 G C IGLV8-61 Missense_Mutation p.D111H 0.43 deleterious(0.03) benign(0.107) TCGA-DK-A3IS-01 22 30950948 30950948 G A GAL3ST1 Missense_Mutation p.R422W 0.11 deleterious(0) possibly_damaging(0.582) TCGA-DK-A3IS-01 22 38245481 38245481 G A EIF3L Missense_Mutation p.E9K 0.40 tolerated(0.06) unknown(0) TCGA-DK-A3IS-01 22 42280950 42280950 G C SREBF2 Missense_Mutation p.E715Q 0.41 tolerated(0.19) benign(0.289) TCGA-DK-A3IS-01 2 120712877 120712877 G C PTPN4 Missense_Mutation p.G653A 0.47 deleterious(0) benign(0.022) TCGA-DK-A3IS-01 2 127951379 127951379 G C CYP27C1 Missense_Mutation p.L262V 0.52 tolerated(0.19) benign(0.446) TCGA-DK-A3IS-01 2 141128300 141128300 C T LRP1B Missense_Mutation p.D3663N 0.53 possibly_damaging(0.822) TCGA-DK-A3IS-01 2 148653908 148653908 T G ACVR2A Missense_Mutation p.F32V 0.63 deleterious(0.04) benign(0.077) TCGA-DK-A3IS-01 2 152397312 152397312 G C NEB Missense_Mutation p.L6896V 0.37 probably_damaging(0.975) TCGA-DK-A3IS-01 2 170606301 170606301 G C KLHL23 3'UTR 0.36 TCGA-DK-A3IS-01 2 171070928 171070928 C G MYO3B Missense_Mutation p.L121V 0.48 tolerated(0.15) possibly_damaging(0.491) TCGA-DK-A3IS-01 2 173352763 173352763 C T ITGA6 Missense_Mutation p.S800L 0.24 tolerated(0.08) benign(0.018) TCGA-DK-A3IS-01 2 179345578 179345578 C T PLEKHA3 5'UTR 0.31 TCGA-DK-A3IS-01 2 179358588 179358588 G A PLEKHA3 Missense_Mutation p.E108K 0.21 deleterious(0.04) benign(0.135) TCGA-DK-A3IS-01 2 197135923 197135923 G A HECW2 Missense_Mutation p.S1110L 0.16 deleterious(0.03) benign(0.164) TCGA-DK-A3IS-01 2 20240714 20240714 A T LAPTM4A Missense_Mutation p.M57K 0.05 tolerated(0.24) benign(0.124) TCGA-DK-A3IS-01 2 203397422 203397422 G C BMPR2 Missense_Mutation p.E415Q 0.56 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IS-01 2 213914495 213914495 G T IKZF2 Missense_Mutation p.F172L 0.35 tolerated(1) probably_damaging(0.994) TCGA-DK-A3IS-01 2 220022246 220022246 G C NHEJ1 Missense_Mutation p.S113C 0.48 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IS-01 2 220041503 220041503 G A CNPPD1 Silent p.L16L 0.62 TCGA-DK-A3IS-01 2 220470931 220470931 G C STK11IP Silent p.G299G 0.20 TCGA-DK-A3IS-01 2 230661454 230661454 G A TRIP12 Silent p.V1148V 0.28 TCGA-DK-A3IS-01 2 241516112 241516112 C G RNPEPL1 Missense_Mutation p.I326M 0.60 deleterious(0.05) possibly_damaging(0.771) TCGA-DK-A3IS-01 2 241992606 241992606 C A SNED1 Missense_Mutation p.A707D 0.29 tolerated(0.06) possibly_damaging(0.467) TCGA-DK-A3IS-01 2 242187661 242187661 C G HDLBP Missense_Mutation p.E539Q 0.29 tolerated(0.9) benign(0.012) TCGA-DK-A3IS-01 2 25044461 25044461 C T ADCY3 Missense_Mutation p.D1018N 0.23 deleterious(0) probably_damaging(0.979) TCGA-DK-A3IS-01 2 27465812 27465812 C T CAD Nonsense_Mutation p.R2151* 0.26 TCGA-DK-A3IS-01 2 27858051 27858051 G A GPN1 Silent p.S172S 0.60 TCGA-DK-A3IS-01 2 38298398 38298398 C A CYP1B1 Missense_Mutation p.D367Y 0.62 deleterious(0) possibly_damaging(0.609) TCGA-DK-A3IS-01 2 54880916 54880916 C T SPTBN1 Silent p.F1916F 0.66 TCGA-DK-A3IS-01 2 54882218 54882218 C G SPTBN1 Missense_Mutation p.S1945C 0.43 deleterious(0.01) probably_damaging(0.947) TCGA-DK-A3IS-01 2 86090557 86090557 G A ST3GAL5 Missense_Mutation p.P45L 0.22 deleterious_low_confidence(0.01) benign(0.344) TCGA-DK-A3IS-01 2 98810866 98810866 G C VWA3B Missense_Mutation p.D550H 0.56 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IS-01 2 99767109 99767109 G A C2ORF15 Missense_Mutation p.E64K 0.42 deleterious_low_confidence(0.05) benign(0.029) TCGA-DK-A3IS-01 3 101060619 101060619 G C SENP7 Nonsense_Mutation p.S704* 0.40 TCGA-DK-A3IS-01 3 112255401 112255401 C G ATG3 Missense_Mutation p.D239H 0.38 deleterious(0) probably_damaging(0.946) TCGA-DK-A3IS-01 3 11300932 11300932 C T HRH1 Missense_Mutation p.S70L 0.49 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IS-01 3 122552196 122552196 A T DIRC2 Missense_Mutation p.T246S 0.11 tolerated(0.05) benign(0.015) TCGA-DK-A3IS-01 3 122646670 122646670 G T SEMA5B Missense_Mutation p.R327S 0.44 deleterious(0) probably_damaging(0.958) TCGA-DK-A3IS-01 3 127842458 127842458 G A RUVBL1 Missense_Mutation p.S37L 0.55 tolerated(0.17) benign(0.05) TCGA-DK-A3IS-01 3 128758636 128758636 C T EFCC1 Missense_Mutation p.S581L 0.55 tolerated(0.67) benign(0.001) TCGA-DK-A3IS-01 3 139062910 139062910 G C MRPS22 Missense_Mutation p.L14F 0.43 tolerated_low_confidence(0.22) benign(0.003) TCGA-DK-A3IS-01 3 141162438 141162438 G C ZBTB38 Missense_Mutation p.G403A 0.45 tolerated(0.37) benign(0.042) TCGA-DK-A3IS-01 3 161064103 161064103 C G SPTSSB Missense_Mutation p.L3F 0.40 tolerated(0.73) benign(0.001) TCGA-DK-A3IS-01 3 168830619 168830619 C G MECOM Missense_Mutation p.E722Q 0.38 deleterious(0.02) possibly_damaging(0.898) TCGA-DK-A3IS-01 3 183273151 183273151 G T KLHL6 Missense_Mutation p.F97L 0.37 deleterious(0) possibly_damaging(0.894) TCGA-DK-A3IS-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.41 deleterious_low_confidence(0.02) benign(0.001) TCGA-DK-A3IS-01 3 25805630 25805630 G C NGLY1 Nonsense_Mutation p.S140* 0.46 TCGA-DK-A3IS-01 3 44541938 44541938 C T ZNF852 Missense_Mutation p.E111K 0.29 tolerated(0.17) benign(0.013) TCGA-DK-A3IS-01 3 44835802 44835802 G C KIF15 Missense_Mutation p.E245Q 0.37 tolerated(0.08) probably_damaging(0.999) TCGA-DK-A3IS-01 3 47270048 47270048 G C KIF9 3'UTR 0.42 TCGA-DK-A3IS-01 3 50222226 50222226 G A SEMA3F Missense_Mutation p.E479K 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A3IS-01 3 53908332 53908332 C T ACTR8 Missense_Mutation p.R324Q 0.51 deleterious(0.01) possibly_damaging(0.842) TCGA-DK-A3IS-01 3 64132939 64132939 C G PRICKLE2 Missense_Mutation p.Q409H 0.40 tolerated(0.17) benign(0.336) TCGA-DK-A3IS-01 3 9743604 9743604 G C MTMR14 Missense_Mutation p.E634Q 0.39 tolerated(0.2) probably_damaging(0.968) TCGA-DK-A3IS-01 3 9791955 9791955 G A OGG1 5'UTR 0.37 TCGA-DK-A3IS-01 4 106510538 106510538 C G ARHGEF38 Silent p.L110L 0.39 TCGA-DK-A3IS-01 4 106603932 106603932 C T INTS12 Silent p.Q449Q 0.37 TCGA-DK-A3IS-01 4 122261627 122261627 C T QRFPR Missense_Mutation p.R160Q 0.45 tolerated(0.39) benign(0.013) TCGA-DK-A3IS-01 4 123141550 123141550 G C KIAA1109 Missense_Mutation p.M846I 0.49 benign(0.313) TCGA-DK-A3IS-01 4 123159417 123159417 G A KIAA1109 Missense_Mutation p.E1249K 0.48 benign(0.092) TCGA-DK-A3IS-01 4 147754965 147754965 G A TTC29 Silent p.L324L 0.47 TCGA-DK-A3IS-01 4 153303406 153303406 G C FBXW7 Intron 0.41 TCGA-DK-A3IS-01 4 1737475 1737475 G T TACC3 Missense_Mutation p.L554F 0.63 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A3IS-01 4 1803377 1803377 G A FGFR3 Missense_Mutation p.E216K 0.06 deleterious(0.01) possibly_damaging(0.665) TCGA-DK-A3IS-01 4 1803395 1803395 G A FGFR3 Missense_Mutation p.D222N 0.05 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IS-01 4 1803435 1803435 G A FGFR3 Missense_Mutation p.G235D 0.03 deleterious(0.02) probably_damaging(0.92) TCGA-DK-A3IS-01 4 1808937 1808937 C - FGFR3 Frame_Shift_Del p.H793Tfs*29 0.51 TCGA-DK-A3IS-01 4 185606792 185606792 C T PRIMPOL Missense_Mutation p.R417W 0.51 probably_damaging(1) TCGA-DK-A3IS-01 4 1985607 1985607 G A NELFA Nonsense_Mutation p.Q435* 0.58 TCGA-DK-A3IS-01 4 2129877 2129877 C G POLN Missense_Mutation p.E649Q 0.61 tolerated(0.17) possibly_damaging(0.522) TCGA-DK-A3IS-01 4 2130975 2130975 C T POLN Missense_Mutation p.D600N 0.49 tolerated(0.14) benign(0.031) TCGA-DK-A3IS-01 4 3241734 3241734 A G HTT Missense_Mutation p.Y3126C 0.18 probably_damaging(0.993) TCGA-DK-A3IS-01 4 39000395 39000395 G C TMEM156 Missense_Mutation p.L75V 0.64 tolerated(0.77) benign(0.109) TCGA-DK-A3IS-01 4 40122276 40122276 G C N4BP2 Missense_Mutation p.E849Q 0.45 tolerated(0.14) possibly_damaging(0.522) TCGA-DK-A3IS-01 4 4199404 4199404 G A OTOP1 Missense_Mutation p.A386V 0.43 deleterious(0) benign(0.331) TCGA-DK-A3IS-01 4 48503750 48503750 C G FRYL Missense_Mutation p.E2828Q 0.56 tolerated(1) probably_damaging(0.995) TCGA-DK-A3IS-01 4 54342918 54342918 A - LNX1 Splice_Site p.X631_splice 0.16 TCGA-DK-A3IS-01 4 57356772 57356772 T A SRP72 Missense_Mutation p.I488N 0.51 deleterious(0) probably_damaging(0.983) TCGA-DK-A3IS-01 4 6925317 6925317 G A TBC1D14 Silent p.G67G 0.08 TCGA-DK-A3IS-01 4 6969065 6969065 G C TBC1D14 Missense_Mutation p.D253H 0.06 tolerated(0.08) benign(0.322) TCGA-DK-A3IS-01 4 72222830 72222830 C A SLC4A4 Missense_Mutation p.S219Y 0.48 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A3IS-01 4 7436007 7436007 G T PSAPL1 Silent p.S200S 0.48 TCGA-DK-A3IS-01 4 80328945 80328945 A T GK2 Missense_Mutation p.V137D 0.10 deleterious(0.01) possibly_damaging(0.707) TCGA-DK-A3IS-01 4 8396454 8396454 G A ACOX3 Missense_Mutation p.P358S 0.08 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IS-01 4 89671584 89671584 G C FAM13A Missense_Mutation p.S644C 0.35 deleterious(0) probably_damaging(0.966) TCGA-DK-A3IS-01 4 89671699 89671699 G A FAM13A Nonsense_Mutation p.Q606* 0.34 TCGA-DK-A3IS-01 5 121759135 121759135 G A SNCAIP Missense_Mutation p.E235K 0.33 tolerated(0.23) benign(0.066) TCGA-DK-A3IS-01 5 122364492 122364492 G A PPIC Silent p.I101I 0.29 TCGA-DK-A3IS-01 5 131046318 131046318 G C FNIP1 Missense_Mutation p.S220C 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A3IS-01 5 140222358 140222358 G A PCDHA8 Silent p.A484A 0.36 TCGA-DK-A3IS-01 5 141314121 141314121 G A KIAA0141 Silent p.V373V 0.66 TCGA-DK-A3IS-01 5 14690313 14690313 C T FAM105B Missense_Mutation p.P254S 0.56 deleterious(0) probably_damaging(1) TCGA-DK-A3IS-01 5 148999931 148999931 C T ARHGEF37 Silent p.F303F 0.20 TCGA-DK-A3IS-01 5 149498309 149498309 C A PDGFRB Splice_Site p.X968_splice 0.60 TCGA-DK-A3IS-01 5 150935954 150935954 G C FAT2 Missense_Mutation p.S1195C 0.43 possibly_damaging(0.778) TCGA-DK-A3IS-01 5 16453158 16453158 G A ZNF622 Nonsense_Mutation p.Q424* 0.31 TCGA-DK-A3IS-01 5 172410891 172410891 C G ATP6V0E1 Missense_Mutation p.L10V 0.34 tolerated(0.6) benign(0.008) TCGA-DK-A3IS-01 5 32364311 32364311 C G ZFR Missense_Mutation p.R969T 0.52 deleterious(0) unknown(0) TCGA-DK-A3IS-01 5 33751570 33751570 C T ADAMTS12 Silent p.P191P 0.26 TCGA-DK-A3IS-01 5 33997421 33997421 G A AMACR Intron 0.53 TCGA-DK-A3IS-01 5 39311467 39311467 G C C9 Missense_Mutation p.L295V 0.61 deleterious(0.02) possibly_damaging(0.764) TCGA-DK-A3IS-01 5 52382837 52382837 C T ITGA2 Missense_Mutation p.P1105L 0.10 deleterious(0) possibly_damaging(0.804) TCGA-DK-A3IS-01 5 55178999 55178999 C T IL31RA Silent p.F194F 0.73 TCGA-DK-A3IS-01 5 64967757 64967757 G C SGTB Nonsense_Mutation p.S263* 0.45 TCGA-DK-A3IS-01 5 80063775 80063775 G C MSH3 Missense_Mutation p.L640F 0.24 deleterious(0.04) benign(0.111) TCGA-DK-A3IS-01 5 95067591 95067591 G A RHOBTB3 Missense_Mutation p.E11K 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A3IS-01 5 95067677 95067677 G C RHOBTB3 Missense_Mutation p.E39D 0.31 tolerated(0.48) benign(0.004) TCGA-DK-A3IS-01 5 96031567 96031567 C G CAST Missense_Mutation p.Q56E 0.53 tolerated(0.17) probably_damaging(0.985) TCGA-DK-A3IS-01 6 112671645 112671645 C G RFPL4B Missense_Mutation p.F245L 0.58 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IS-01 6 132909813 132909813 C G TAAR5 Nonstop_Mutation p.*338Sext*10 0.55 TCGA-DK-A3IS-01 6 146127103 146127103 C T FBXO30 Missense_Mutation p.D147N 0.59 tolerated(0.19) benign(0.003) TCGA-DK-A3IS-01 6 150209697 150209697 G A RAET1E Silent p.L243L 0.32 TCGA-DK-A3IS-01 6 150210554 150210554 G C RAET1E Silent p.L184L 0.36 TCGA-DK-A3IS-01 6 158449892 158449892 C T SYNJ2 Missense_Mutation p.L107F 0.57 deleterious(0) probably_damaging(0.97) TCGA-DK-A3IS-01 6 167728969 167728969 C T UNC93A 3'UTR 0.56 TCGA-DK-A3IS-01 6 26156557 26156557 C G HIST1H2BD 5'Flank 0.50 TCGA-DK-A3IS-01 6 26156599 26156599 C G HIST1H1E 5'UTR 0.50 TCGA-DK-A3IS-01 6 26197163 26197163 C T HIST1H3D Missense_Mutation p.E106K 0.47 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DK-A3IS-01 6 31735166 31735166 C T VWA7 Missense_Mutation p.E588K 0.40 tolerated(0.36) benign(0.004) TCGA-DK-A3IS-01 6 32362585 32362585 G A BTNL2 Silent p.D432D 0.08 TCGA-DK-A3IS-01 6 32821186 32821186 G A TAP1 Silent p.L136L 0.28 TCGA-DK-A3IS-01 6 34214230 34214230 C T C6orf1 3'UTR 0.29 TCGA-DK-A3IS-01 6 34499551 34499551 C G PACSIN1 Silent p.L404L 0.41 TCGA-DK-A3IS-01 6 44233256 44233256 C T NFKBIE Missense_Mutation p.R82Q 0.33 tolerated_low_confidence(0.08) benign(0.238) TCGA-DK-A3IS-01 6 44233273 44233273 C T NFKBIE Nonsense_Mutation p.W76* 0.30 TCGA-DK-A3IS-01 6 54735420 54735420 C A FAM83B Missense_Mutation p.H126N 0.32 deleterious(0.03) benign(0.11) TCGA-DK-A3IS-01 6 76734920 76734920 T A IMPG1 Missense_Mutation p.I185F 0.22 tolerated(1) benign(0) TCGA-DK-A3IS-01 6 84872884 84872884 C T KIAA1009 Missense_Mutation p.D831N 0.22 tolerated(0.52) benign(0.046) TCGA-DK-A3IS-01 7 100028615 100028615 G A MEPCE Missense_Mutation p.R325K 0.42 tolerated(0.16) probably_damaging(0.986) TCGA-DK-A3IS-01 7 100334701 100334701 C T ZAN Missense_Mutation p.R175W 1.00 benign(0.022) TCGA-DK-A3IS-01 7 100382358 100382358 G A ZAN Missense_Mutation p.E2245K 0.40 unknown(0) TCGA-DK-A3IS-01 7 100843571 100843571 C T MOGAT3 Missense_Mutation p.E78K 0.39 tolerated(0.49) benign(0.015) TCGA-DK-A3IS-01 7 129680905 129680905 G C ZC3HC1 Missense_Mutation p.P99A 0.35 deleterious(0) possibly_damaging(0.52) TCGA-DK-A3IS-01 7 141438924 141438924 G A SSBP1 Intron 0.57 TCGA-DK-A3IS-01 7 142149020 142149020 G A TRBV5-5 Missense_Mutation p.S84L 0.48 deleterious(0.02) benign(0.333) TCGA-DK-A3IS-01 7 143885433 143885433 G A ARHGEF35 Missense_Mutation p.S15F 0.26 deleterious(0) benign(0.26) TCGA-DK-A3IS-01 7 150693932 150693932 G C NOS3 Missense_Mutation p.E167D 0.40 tolerated(0.65) benign(0.038) TCGA-DK-A3IS-01 7 151880184 151880184 C G KMT2C Missense_Mutation p.D1714H 0.44 probably_damaging(0.999) TCGA-DK-A3IS-01 7 151891214 151891214 C G KMT2C Splice_Site p.X1514_splice 0.47 TCGA-DK-A3IS-01 7 21947797 21947797 G A CDCA7L Missense_Mutation p.S211L 0.50 deleterious(0.04) possibly_damaging(0.589) TCGA-DK-A3IS-01 7 2278827 2278827 C G FTSJ2 Intron 0.45 TCGA-DK-A3IS-01 7 43916794 43916794 C G URGCP Missense_Mutation p.L756F 0.47 deleterious(0.02) possibly_damaging(0.736) TCGA-DK-A3IS-01 7 44664045 44664045 C T OGDH Nonsense_Mutation p.Q35* 0.44 TCGA-DK-A3IS-01 7 47454805 47454805 C T TNS3 Splice_Site p.X158_splice 0.47 TCGA-DK-A3IS-01 7 55266407 55266407 C G EGFR Intron 0.48 TCGA-DK-A3IS-01 7 5967926 5967926 T C RSPH10B Missense_Mutation p.K778R 0.14 tolerated(0.16) benign(0.035) TCGA-DK-A3IS-01 7 77011907 77011907 C T GSAP Silent p.L170L 0.30 TCGA-DK-A3IS-01 7 77649030 77649030 C T MAGI2 Missense_Mutation p.A1324T 0.50 tolerated_low_confidence(0.57) benign(0) TCGA-DK-A3IS-01 7 87529618 87529618 G A DBF4 Missense_Mutation p.V255I 0.48 tolerated(0.2) benign(0.005) TCGA-DK-A3IS-01 7 91736731 91736731 G C AKAP9 Missense_Mutation p.Q3847H 0.57 benign(0.009) TCGA-DK-A3IS-01 7 97822019 97822019 G C LMTK2 Missense_Mutation p.E748Q 0.57 tolerated(0.07) possibly_damaging(0.821) TCGA-DK-A3IS-01 8 103301750 103301750 G T UBR5 Silent p.I1548I 0.08 TCGA-DK-A3IS-01 8 116616766 116616766 G A TRPS1 Missense_Mutation p.S477L 0.36 tolerated_low_confidence(0.12) benign(0.144) TCGA-DK-A3IS-01 8 131138243 131138243 G A ASAP1 Nonsense_Mutation p.Q492* 0.38 TCGA-DK-A3IS-01 8 144411592 144411592 A G TOP1MT Silent p.Y96Y 0.22 TCGA-DK-A3IS-01 8 1645432 1645432 C T DLGAP2 Silent p.N892N 0.07 TCGA-DK-A3IS-01 8 23290508 23290508 C T ENTPD4 Silent p.R594R 0.46 TCGA-DK-A3IS-01 8 26238281 26238281 C T BNIP3L 5'Flank 0.34 TCGA-DK-A3IS-01 8 64099964 64099964 C T YTHDF3 Silent p.F464F 0.45 TCGA-DK-A3IS-01 8 64100049 64100049 C G YTHDF3 Missense_Mutation p.Q493E 0.54 deleterious(0.01) benign(0.002) TCGA-DK-A3IS-01 8 67341356 67341356 G C RRS1 5'UTR 0.41 TCGA-DK-A3IS-01 8 67342599 67342599 C T RRS1 3'UTR 0.48 TCGA-DK-A3IS-01 8 71068649 71068649 G A NCOA2 Nonsense_Mutation p.Q651* 0.36 TCGA-DK-A3IS-01 8 75272520 75272520 G T GDAP1 Silent p.P153P 0.39 TCGA-DK-A3IS-01 8 77618708 77618708 G A ZFHX4 Missense_Mutation p.M795I 0.29 benign(0.043) TCGA-DK-A3IS-01 8 77763619 77763619 G C ZFHX4 Missense_Mutation p.E1488Q 0.39 benign(0.013) TCGA-DK-A3IS-01 8 8749555 8749555 G A MFHAS1 Silent p.I338I 0.45 TCGA-DK-A3IS-01 9 100845193 100845193 C T NANS Silent p.L312L 0.90 TCGA-DK-A3IS-01 9 131342008 131342008 G A SPTAN1 Silent p.V438V 0.94 TCGA-DK-A3IS-01 9 136081794 136081794 G A OBP2B Missense_Mutation p.S133F 0.80 deleterious(0.03) benign(0.094) TCGA-DK-A3IS-01 9 15472667 15472667 G A PSIP1 Nonsense_Mutation p.R314* 0.88 TCGA-DK-A3IS-01 9 26884835 26884835 G A CAAP1 Missense_Mutation p.S213F 0.86 tolerated(0.19) possibly_damaging(0.587) TCGA-DK-A3IS-01 9 35805555 35805555 C G NPR2 Silent p.L645L 0.90 TCGA-DK-A3IS-01 9 72879297 72879297 G C SMC5 Missense_Mutation p.S88T 0.30 tolerated(0.21) possibly_damaging(0.781) TCGA-DK-A3IS-01 9 94172288 94172288 G A NFIL3 Silent p.I243I 0.84 TCGA-DK-A3IS-01 9 95277062 95277062 G C ECM2 Missense_Mutation p.S302C 0.85 tolerated(0.07) benign(0.021) TCGA-DK-A3IS-01 X 10188910 10188910 C T CLCN4 Missense_Mutation p.R729W 0.89 deleterious(0) possibly_damaging(0.893) TCGA-DK-A3IS-01 X 117566847 117566847 C T WDR44 Missense_Mutation p.S614L 0.93 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IS-01 X 123197011 123197011 C T STAG2 Nonsense_Mutation p.Q593* 0.89 TCGA-DK-A3IS-01 X 124097480 124097480 G A TENM1 Silent p.N41N 0.42 TCGA-DK-A3IS-01 X 135593753 135593753 G C HTATSF1 Missense_Mutation p.E617Q 0.86 deleterious_low_confidence(0) unknown(0) TCGA-DK-A3IS-01 X 151123200 151123200 G C GABRE Silent p.L498L 0.79 TCGA-DK-A3IS-01 X 151303448 151303448 C T MAGEA10 Silent p.L215L 0.85 TCGA-DK-A3IS-01 X 152770152 152770152 G A BGN Silent p.Q21Q 0.97 TCGA-DK-A3IS-01 X 152770154 152770154 G A BGN Missense_Mutation p.R22K 0.98 tolerated(0.57) benign(0.001) TCGA-DK-A3IS-01 X 1571748 1571748 G A ASMTL 5'UTR 0.61 TCGA-DK-A3IS-01 X 22117121 22117121 C T PHEX Intron 0.90 TCGA-DK-A3IS-01 X 29959767 29959767 G C IL1RAPL1 Splice_Site p.X353_splice 0.94 TCGA-DK-A3IS-01 X 44894182 44894182 C T KDM6A Nonsense_Mutation p.Q191* 0.95 TCGA-DK-A3IS-01 X 48457331 48457331 C T WDR13 Missense_Mutation p.L90F 0.85 tolerated(0.06) benign(0.081) TCGA-DK-A3IS-01 X 54783589 54783589 G A ITIH6 Missense_Mutation p.S973F 1.00 tolerated(0.05) probably_damaging(0.916) TCGA-DK-A3IS-01 X 69649756 69649756 G A GDPD2 Intron 0.84 TCGA-DK-A3IS-01 X 70099855 70099855 C A TEX11 Nonsense_Mutation p.E63* 0.33 TCGA-DK-A3IS-01 X 71843049 71843049 C T PHKA1 Missense_Mutation p.E624K 0.98 tolerated(0.09) benign(0.125) TCGA-DK-A3IT-01 10 100249921 100249921 C G HPSE2 Silent p.L451L 0.37 TCGA-DK-A3IT-01 10 103369270 103369270 G C DPCD 3'UTR 0.62 TCGA-DK-A3IT-01 10 103567511 103567511 C T MGEA5 Missense_Mutation p.E210K 0.13 tolerated(0.77) benign(0.064) TCGA-DK-A3IT-01 10 103906708 103906708 G C PPRC1 Missense_Mutation p.R1320P 0.19 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 10 103908426 103908426 G C PPRC1 Missense_Mutation p.R1531T 0.27 deleterious(0) benign(0.227) TCGA-DK-A3IT-01 10 103909067 103909067 G C PPRC1 Missense_Mutation p.K1624N 0.27 deleterious(0.01) benign(0.403) TCGA-DK-A3IT-01 10 105819447 105819447 C G COL17A1 Missense_Mutation p.E391Q 0.31 unknown(0) TCGA-DK-A3IT-01 10 107007054 107007054 G C SORCS3 Missense_Mutation p.D1024H 0.35 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IT-01 10 129537070 129537070 G A FOXI2 Silent p.L266L 0.56 TCGA-DK-A3IT-01 10 134459392 134459392 G A INPP5A Silent p.P46P 0.40 TCGA-DK-A3IT-01 10 17195630 17195630 C G TRDMT1 Missense_Mutation p.E317D 0.19 tolerated(0.19) benign(0.043) TCGA-DK-A3IT-01 10 21962735 21962735 C G MLLT10 Missense_Mutation p.S503C 0.25 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IT-01 10 21970258 21970258 C G MLLT10 Intron 0.29 TCGA-DK-A3IT-01 10 48389845 48389845 C T RBP3 Missense_Mutation p.D345N 0.16 tolerated(0.08) probably_damaging(0.974) TCGA-DK-A3IT-01 10 50966537 50966537 G A OGDHL Silent p.S34S 0.36 TCGA-DK-A3IT-01 10 5925115 5925115 C T ANKRD16 Missense_Mutation p.E235K 0.18 tolerated(0.89) benign(0.013) TCGA-DK-A3IT-01 10 5945065 5945065 C A FBXO18 Missense_Mutation p.F79L 0.40 tolerated(1) benign(0.016) TCGA-DK-A3IT-01 10 68687370 68687370 G A LRRTM3 Silent p.Q232Q 0.30 TCGA-DK-A3IT-01 10 72324122 72324122 G A PALD1 Silent p.A755A 0.34 TCGA-DK-A3IT-01 10 73111520 73111520 G C SLC29A3 Missense_Mutation p.M195I 0.42 deleterious(0.05) benign(0.111) TCGA-DK-A3IT-01 10 73122380 73122380 G T SLC29A3 3'UTR 0.48 TCGA-DK-A3IT-01 10 73122381 73122381 G T SLC29A3 3'UTR 0.48 TCGA-DK-A3IT-01 10 73464806 73464806 A G CDH23 Missense_Mutation p.I550V 0.30 tolerated(0.16) benign(0.175) TCGA-DK-A3IT-01 10 7830116 7830116 C T ATP5C1 5'UTR 0.26 TCGA-DK-A3IT-01 10 98762081 98762081 G A SLIT1 Silent p.S1400S 0.12 TCGA-DK-A3IT-01 11 1028937 1028937 C T MUC6 Missense_Mutation p.E469K 0.41 unknown(0) TCGA-DK-A3IT-01 11 104871143 104871143 G A CASP5 Missense_Mutation p.S279F 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 11 107673745 107673745 G C SLC35F2 Silent p.L307L 0.27 TCGA-DK-A3IT-01 11 108044182 108044182 G C NPAT Missense_Mutation p.T510S 0.31 tolerated(0.25) benign(0.032) TCGA-DK-A3IT-01 11 111594445 111594445 C G SIK2 Silent p.L791L 0.31 TCGA-DK-A3IT-01 11 117302289 117302289 C G DSCAML1 Missense_Mutation p.E1839Q 0.25 deleterious(0) probably_damaging(0.979) TCGA-DK-A3IT-01 11 118128003 118128003 C G MPZL2 Missense_Mutation p.E204Q 0.12 tolerated(0.07) benign(0.026) TCGA-DK-A3IT-01 11 119167741 119167741 C T CBL Missense_Mutation p.S717L 0.35 tolerated_low_confidence(0.48) benign(0) TCGA-DK-A3IT-01 11 129762708 129762708 C G NFRKB Missense_Mutation p.E26Q 0.17 deleterious(0.01) unknown(0) TCGA-DK-A3IT-01 11 33370177 33370177 C T HIPK3 Nonsense_Mutation p.Q827* 0.44 TCGA-DK-A3IT-01 11 56258214 56258214 G A OR5M8 Silent p.F211F 0.10 TCGA-DK-A3IT-01 11 58711103 58711103 G A GLYATL1 Missense_Mutation p.V38M 0.13 tolerated(0.78) benign(0.264) TCGA-DK-A3IT-01 11 59623355 59623355 G C TCN1 Missense_Mutation p.C308W 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 11 62378418 62378418 G A EML3 Missense_Mutation p.R167W 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-DK-A3IT-01 11 62398090 62398090 C G GANAB Missense_Mutation p.A479P 0.07 tolerated(0.23) possibly_damaging(0.894) TCGA-DK-A3IT-01 11 62398117 62398117 G A GANAB Nonsense_Mutation p.Q470* 0.15 TCGA-DK-A3IT-01 11 62416959 62416959 G A INTS5 Missense_Mutation p.S198L 0.23 deleterious(0) possibly_damaging(0.585) TCGA-DK-A3IT-01 11 64846584 64846584 C G CDCA5 Missense_Mutation p.E252Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IT-01 11 64981715 64981715 C G CAPN1 3'Flank 0.22 TCGA-DK-A3IT-01 11 65271994 65271994 G C MALAT1 RNA 0.26 TCGA-DK-A3IT-01 11 65272034 65272034 G T MALAT1 RNA 0.32 TCGA-DK-A3IT-01 11 65272223 65272223 G A MALAT1 RNA 0.19 TCGA-DK-A3IT-01 11 65272325 65272325 G T MALAT1 RNA 0.12 TCGA-DK-A3IT-01 11 65272679 65272679 G T MALAT1 RNA 0.32 TCGA-DK-A3IT-01 11 65272949 65272949 G T MALAT1 RNA 0.21 TCGA-DK-A3IT-01 11 65273165 65273165 G T MALAT1 RNA 0.29 TCGA-DK-A3IT-01 11 65273350 65273350 G T MALAT1 RNA 0.30 TCGA-DK-A3IT-01 11 65273364 65273364 G T MALAT1 RNA 0.29 TCGA-DK-A3IT-01 11 65273495 65273495 G A MALAT1 RNA 0.28 TCGA-DK-A3IT-01 11 65273619 65273619 G T MALAT1 RNA 0.28 TCGA-DK-A3IT-01 11 65273757 65273757 G C MALAT1 RNA 0.25 TCGA-DK-A3IT-01 11 65273802 65273802 G C MALAT1 RNA 0.26 TCGA-DK-A3IT-01 11 65812927 65812927 C A GAL3ST3 5'UTR 0.34 TCGA-DK-A3IT-01 11 65824372 65824372 C T SF3B2 Missense_Mutation p.R205W 0.21 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DK-A3IT-01 11 67134963 67134963 C G CLCF1 Missense_Mutation p.E51Q 0.26 tolerated(0.72) possibly_damaging(0.729) TCGA-DK-A3IT-01 11 70332669 70332669 G A SHANK2 Silent p.L1244L 0.07 TCGA-DK-A3IT-01 11 72437906 72437906 G A ARAP1 Missense_Mutation p.R90C 0.19 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IT-01 11 73814626 73814626 G C C2CD3 Missense_Mutation p.I710M 0.36 deleterious(0.02) benign(0.393) TCGA-DK-A3IT-01 11 75282943 75282943 G C SERPINH1 Missense_Mutation p.E358Q 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IT-01 11 76980082 76980082 G A GDPD4 Missense_Mutation p.L171F 0.14 tolerated(0.13) benign(0.029) TCGA-DK-A3IT-01 11 78239958 78239958 C T NARS2 Missense_Mutation p.E207K 0.30 tolerated(0.88) benign(0.005) TCGA-DK-A3IT-01 11 85961447 85961447 C G EED Nonsense_Mutation p.S75* 0.30 TCGA-DK-A3IT-01 11 89896561 89896561 G A NAALAD2 Missense_Mutation p.E387K 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 11 94316613 94316613 G A PIWIL4 Splice_Site p.X172_splice 0.29 TCGA-DK-A3IT-01 12 101682793 101682793 G C UTP20 Missense_Mutation p.E191Q 0.21 deleterious(0.01) possibly_damaging(0.862) TCGA-DK-A3IT-01 12 101767377 101767377 G C UTP20 Missense_Mutation p.E2321D 0.41 tolerated(0.11) benign(0.005) TCGA-DK-A3IT-01 12 104187715 104187715 C G NT5DC3 Missense_Mutation p.E272Q 0.21 deleterious(0.04) probably_damaging(0.948) TCGA-DK-A3IT-01 12 110503762 110503762 C G C12orf76 5'UTR 0.25 TCGA-DK-A3IT-01 12 112123512 112123512 C A BRAP Intron 0.33 TCGA-DK-A3IT-01 12 112123571 112123571 C G BRAP Missense_Mutation p.R9P 0.42 deleterious(0) possibly_damaging(0.721) TCGA-DK-A3IT-01 12 121001720 121001720 G C RNF10 Missense_Mutation p.E547Q 0.11 deleterious(0.01) probably_damaging(0.925) TCGA-DK-A3IT-01 12 121088415 121088415 C G CABP1 Intron 0.25 TCGA-DK-A3IT-01 12 123095437 123095437 C T KNTC1 Missense_Mutation p.S1871L 0.20 deleterious(0) benign(0.418) TCGA-DK-A3IT-01 12 12318175 12318175 G T LRP6 Missense_Mutation p.H534N 0.32 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IT-01 12 124017804 124017804 C T RILPL1 Missense_Mutation p.E76K 0.20 tolerated(0.06) probably_damaging(0.977) TCGA-DK-A3IT-01 12 132404537 132404537 G C ULK1 Silent p.L939L 0.15 TCGA-DK-A3IT-01 12 132636972 132636972 C A NOC4L 3'UTR 0.50 TCGA-DK-A3IT-01 12 18650568 18650568 C T PIK3C2G Missense_Mutation p.R927C 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 12 2061674 2061674 G A DCP1B Missense_Mutation p.P478S 0.31 tolerated(0.07) benign(0.424) TCGA-DK-A3IT-01 12 21392046 21392046 G A SLCO1B1 Missense_Mutation p.E667K 0.19 tolerated(0.05) possibly_damaging(0.821) TCGA-DK-A3IT-01 12 21958120 21958120 C T ABCC9 Intron 0.21 TCGA-DK-A3IT-01 12 44176171 44176171 G C IRAK4 Missense_Mutation p.A335P 0.28 tolerated(0.06) probably_damaging(0.914) TCGA-DK-A3IT-01 12 48375126 48375126 C T COL2A1 Silent p.P821P 0.34 TCGA-DK-A3IT-01 12 49448457 49448457 A G KMT2D Missense_Mutation p.F85S 0.21 unknown(0) TCGA-DK-A3IT-01 12 52574306 52574306 G T KRT80 Silent p.I219I 0.17 TCGA-DK-A3IT-01 12 53165706 53165706 G C KRT76 Silent p.L404L 0.32 TCGA-DK-A3IT-01 12 56756561 56756561 C A APOF 5'UTR 0.21 TCGA-DK-A3IT-01 12 660168 660168 C T B4GALNT3 Missense_Mutation p.P360S 0.32 deleterious(0.01) benign(0.314) TCGA-DK-A3IT-01 12 70956762 70956762 G C PTPRB Missense_Mutation p.L1344V 0.11 deleterious(0.04) probably_damaging(0.979) TCGA-DK-A3IT-01 12 71148353 71148353 C G PTPRR Intron 0.11 TCGA-DK-A3IT-01 12 72312286 72312286 C T TBC1D15 Silent p.F536F 0.22 TCGA-DK-A3IT-01 12 78400995 78400995 G A NAV3 Silent p.G559G 0.30 TCGA-DK-A3IT-01 12 85264443 85264443 G A SLC6A15 Nonsense_Mutation p.Q437* 0.25 TCGA-DK-A3IT-01 12 85450069 85450069 G A LRRIQ1 Missense_Mutation p.E500K 0.23 tolerated(0.33) benign(0.016) TCGA-DK-A3IT-01 12 9002262 9002262 C G A2ML1 Intron 0.31 TCGA-DK-A3IT-01 12 98927062 98927062 G C TMPO Missense_Mutation p.E343Q 0.35 deleterious_low_confidence(0.05) benign(0.003) TCGA-DK-A3IT-01 13 100523272 100523272 G A CLYBL Missense_Mutation p.E295K 0.24 tolerated(0.38) benign(0.003) TCGA-DK-A3IT-01 13 20242605 20242605 C G MPHOSPH8 Missense_Mutation p.R755G 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 13 21442798 21442798 C G XPO4 Missense_Mutation p.E38Q 0.32 tolerated(0.08) possibly_damaging(0.666) TCGA-DK-A3IT-01 13 25280593 25280593 C A ATP12A Missense_Mutation p.Q727K 0.39 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IT-01 13 31205593 31205593 C T USPL1 Nonsense_Mutation p.Q284* 0.24 TCGA-DK-A3IT-01 13 32808828 32808828 C A FRY Nonsense_Mutation p.S1882* 0.29 TCGA-DK-A3IT-01 13 39540963 39540963 C T STOML3 Silent p.%3D 0.34 TCGA-DK-A3IT-01 13 53419572 53419572 G C PCDH8 Missense_Mutation p.H943D 0.44 tolerated(0.08) possibly_damaging(0.688) TCGA-DK-A3IT-01 13 72053449 72053449 C T DACH1 Splice_Site p.X577_splice 0.19 TCGA-DK-A3IT-01 13 79190193 79190193 G C RNF219 Nonsense_Mutation p.S568* 0.32 TCGA-DK-A3IT-01 14 102551299 102551299 C A HSP90AA1 Nonsense_Mutation p.E356* 0.28 TCGA-DK-A3IT-01 14 102552620 102552620 C G HSP90AA1 Missense_Mutation p.L154F 0.26 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-DK-A3IT-01 14 105172458 105172458 C G INF2 Missense_Mutation p.S263C 0.36 tolerated(0.29) benign(0.079) TCGA-DK-A3IT-01 14 105173276 105173276 C G INF2 Silent p.L291L 0.39 TCGA-DK-A3IT-01 14 105174218 105174218 C A INF2 Silent p.I538I 0.16 TCGA-DK-A3IT-01 14 21991095 21991095 G A SALL2 Nonsense_Mutation p.Q923* 0.25 TCGA-DK-A3IT-01 14 23342569 23342569 G C LRP10 Missense_Mutation p.Q43H 0.31 tolerated(0.13) benign(0.135) TCGA-DK-A3IT-01 14 23530572 23530572 G C ACIN1 Nonsense_Mutation p.S1178* 0.24 TCGA-DK-A3IT-01 14 23858626 23858626 T G MYH6 Missense_Mutation p.K1318N 0.11 deleterious(0) possibly_damaging(0.785) TCGA-DK-A3IT-01 14 23891402 23891402 C G MYH7 Missense_Mutation p.E1078Q 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-DK-A3IT-01 14 24584752 24584752 G C DCAF11 5'UTR 0.14 TCGA-DK-A3IT-01 14 24737148 24737148 G A RABGGTA Silent p.I388I 0.26 TCGA-DK-A3IT-01 14 24738898 24738898 G A RABGGTA Missense_Mutation p.H144Y 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 14 50825768 50825768 C T CDKL1 Missense_Mutation p.E91K 0.26 deleterious(0.01) benign(0.026) TCGA-DK-A3IT-01 14 52905928 52905928 G C TXNDC16 Missense_Mutation p.H730D 0.18 deleterious(0.03) benign(0.032) TCGA-DK-A3IT-01 14 54950455 54950455 C A GMFB Nonsense_Mutation p.E12* 0.28 TCGA-DK-A3IT-01 14 58831818 58831818 C G ARID4A Nonsense_Mutation p.S1004* 0.10 TCGA-DK-A3IT-01 14 58895165 58895165 G C KIAA0586 Missense_Mutation p.L73F 0.26 tolerated(0.17) possibly_damaging(0.499) TCGA-DK-A3IT-01 14 63851225 63851225 G C PPP2R5E Missense_Mutation p.S380C 0.26 tolerated(0.3) benign(0.04) TCGA-DK-A3IT-01 14 64518876 64518876 G A SYNE2 Missense_Mutation p.E2749K 0.23 possibly_damaging(0.851) TCGA-DK-A3IT-01 14 89336504 89336504 C G TTC8 Missense_Mutation p.F337L 0.41 deleterious(0) probably_damaging(0.961) TCGA-DK-A3IT-01 14 90429788 90429788 C G TDP1 Missense_Mutation p.I110M 0.31 tolerated_low_confidence(0.11) benign(0.032) TCGA-DK-A3IT-01 14 91701248 91701248 C G GPR68 Missense_Mutation p.Q49H 0.32 deleterious(0) possibly_damaging(0.573) TCGA-DK-A3IT-01 14 92471718 92471718 C G TRIP11 Missense_Mutation p.E868Q 0.25 deleterious(0.02) benign(0.201) TCGA-DK-A3IT-01 15 20170120 20170120 T C IGHV1OR15-9 Missense_Mutation p.Y51C 0.21 deleterious(0) benign(0.18) TCGA-DK-A3IT-01 15 31197525 31197525 C G FAN1 Missense_Mutation p.S220C 0.34 tolerated(0.06) benign(0.086) TCGA-DK-A3IT-01 15 34645971 34645971 C A NUTM1 Missense_Mutation p.Q297K 0.42 deleterious(0.01) possibly_damaging(0.85) TCGA-DK-A3IT-01 15 42839461 42839461 G C LRRC57 Missense_Mutation p.Q164E 0.12 tolerated(0.09) probably_damaging(0.993) TCGA-DK-A3IT-01 15 51758463 51758463 C T DMXL2 Missense_Mutation p.E2480K 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A3IT-01 15 59191829 59191829 C A SLTM Missense_Mutation p.M299I 0.24 tolerated(0.19) unknown(0) TCGA-DK-A3IT-01 15 65040670 65040670 G A RBPMS2 Missense_Mutation p.A172V 0.31 deleterious(0.05) benign(0.15) TCGA-DK-A3IT-01 15 65680830 65680830 G C IGDCC4 Missense_Mutation p.F934L 0.26 deleterious(0.01) possibly_damaging(0.792) TCGA-DK-A3IT-01 15 65693281 65693281 G A IGDCC4 Missense_Mutation p.S235F 0.31 deleterious(0.02) possibly_damaging(0.535) TCGA-DK-A3IT-01 15 66845384 66845384 G T LCTL Missense_Mutation p.L379M 0.14 deleterious(0.05) benign(0.213) TCGA-DK-A3IT-01 15 67457371 67457371 G A SMAD3 Missense_Mutation p.M115I 0.13 tolerated(0.44) benign(0.003) TCGA-DK-A3IT-01 15 72638822 72638822 C T HEXA Intron 0.27 TCGA-DK-A3IT-01 15 77770687 77770687 G T HMG20A Nonsense_Mutation p.E248* 0.27 TCGA-DK-A3IT-01 15 86064775 86064775 C T AKAP13 Silent p.V50V 0.15 TCGA-DK-A3IT-01 15 88576243 88576243 G C NTRK3 Nonsense_Mutation p.S477* 0.21 TCGA-DK-A3IT-01 15 90348336 90348336 C T ANPEP Silent p.V290V 0.30 TCGA-DK-A3IT-01 15 90348636 90348636 C G ANPEP Missense_Mutation p.D225H 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 15 90892117 90892117 G T GABARAPL3 Missense_Mutation p.L105M 0.31 deleterious(0.03) possibly_damaging(0.848) TCGA-DK-A3IT-01 15 90892196 90892196 G C GABARAPL3 Missense_Mutation p.F78L 0.30 tolerated(0.9) benign(0.319) TCGA-DK-A3IT-01 15 91020904 91020904 G A IQGAP1 Missense_Mutation p.V1038I 0.15 deleterious(0.03) possibly_damaging(0.6) TCGA-DK-A3IT-01 15 91020921 91020921 G C IQGAP1 Missense_Mutation p.E1043D 0.18 tolerated(1) benign(0.001) TCGA-DK-A3IT-01 15 91835762 91835762 C G SV2B Missense_Mutation p.R678G 0.14 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IT-01 15 93558002 93558002 C G CHD2 Missense_Mutation p.S1590C 0.35 deleterious(0.01) possibly_damaging(0.533) TCGA-DK-A3IT-01 16 1413111 1413111 G A GNPTG 3'UTR 0.38 TCGA-DK-A3IT-01 16 16286708 16286708 G T ABCC6 Silent p.S470S 0.13 TCGA-DK-A3IT-01 16 25251339 25251339 C G ZKSCAN2 Missense_Mutation p.R901T 0.31 tolerated(0.64) possibly_damaging(0.762) TCGA-DK-A3IT-01 16 28508751 28508751 G A APOBR Missense_Mutation p.E797K 0.35 deleterious(0) possibly_damaging(0.486) TCGA-DK-A3IT-01 16 31391116 31391116 C T ITGAX Silent p.I969I 0.25 TCGA-DK-A3IT-01 16 4390379 4390379 C T CORO7-PAM16 Missense_Mutation p.E1030K 0.37 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DK-A3IT-01 16 4902846 4902846 C T UBN1 5'UTR 0.29 TCGA-DK-A3IT-01 16 55909205 55909205 G A CES5A Intron 0.27 TCGA-DK-A3IT-01 16 624461 624461 C T PIGQ Silent p.I129I 0.32 TCGA-DK-A3IT-01 16 66620940 66620940 G A CMTM2 Missense_Mutation p.G162E 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 16 67218811 67218811 G A EXOC3L1 Silent p.L633L 0.12 TCGA-DK-A3IT-01 16 67876898 67876898 G T THAP11 Silent p.P147P 0.17 TCGA-DK-A3IT-01 16 67917616 67917616 G C EDC4 Missense_Mutation p.R1332P 0.15 deleterious(0.01) probably_damaging(0.916) TCGA-DK-A3IT-01 16 68308901 68308901 C G SLC7A6 Missense_Mutation p.S91C 0.41 tolerated(0.06) probably_damaging(1) TCGA-DK-A3IT-01 16 697532 697532 T A FAM195A Missense_Mutation p.F100I 0.23 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IT-01 16 71008159 71008159 C G HYDIN Missense_Mutation p.E1652Q 0.13 probably_damaging(0.969) TCGA-DK-A3IT-01 16 74511362 74511362 G C GLG1 Missense_Mutation p.P633A 0.60 deleterious(0.04) probably_damaging(0.996) TCGA-DK-A3IT-01 16 74685877 74685877 G A RFWD3 Missense_Mutation p.S221F 0.62 deleterious(0) possibly_damaging(0.8) TCGA-DK-A3IT-01 16 75642774 75642774 C G ADAT1 Missense_Mutation p.D386H 0.28 tolerated(0.09) probably_damaging(0.99) TCGA-DK-A3IT-01 16 75681873 75681873 C G TERF2IP Missense_Mutation p.F31L 0.18 deleterious(0.01) possibly_damaging(0.823) TCGA-DK-A3IT-01 16 814666 814666 G A MSLN Missense_Mutation p.R107Q 0.29 tolerated(0.2) benign(0.2) TCGA-DK-A3IT-01 16 83948929 83948929 G T MLYCD Silent p.V439V 0.62 TCGA-DK-A3IT-01 16 86601504 86601504 C T FOXC2 Missense_Mutation p.P188L 0.31 tolerated(0.06) benign(0.026) TCGA-DK-A3IT-01 16 89763774 89763774 G C SPATA2L Missense_Mutation p.L415V 0.20 tolerated(0.05) possibly_damaging(0.662) TCGA-DK-A3IT-01 16 89807249 89807249 G T FANCA Missense_Mutation p.S1264Y 0.44 deleterious(0) possibly_damaging(0.86) TCGA-DK-A3IT-01 17 10539066 10539066 C T MYH3 Missense_Mutation p.E1321K 0.38 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IT-01 17 10539067 10539067 C T MYH3 Silent p.L1320L 0.38 TCGA-DK-A3IT-01 17 36935741 36935741 G C PIP4K2B Missense_Mutation p.F183L 0.27 deleterious(0.01) benign(0.104) TCGA-DK-A3IT-01 17 38192035 38192035 G A MED24 Missense_Mutation p.S89F 0.12 tolerated(0.67) probably_damaging(0.943) TCGA-DK-A3IT-01 17 38253600 38253600 C G NR1D1 Missense_Mutation p.E30Q 0.40 tolerated(0.2) benign(0.133) TCGA-DK-A3IT-01 17 38297460 38297460 G T CASC3 Nonsense_Mutation p.E78* 0.40 TCGA-DK-A3IT-01 17 39017902 39017902 C G KRT12 3'UTR 0.16 TCGA-DK-A3IT-01 17 39017927 39017927 C T KRT12 Missense_Mutation p.E491K 0.16 deleterious(0.02) unknown(0) TCGA-DK-A3IT-01 17 39017933 39017933 C A KRT12 Nonsense_Mutation p.E489* 0.16 TCGA-DK-A3IT-01 17 3984727 3984727 C T ZZEF1 Missense_Mutation p.M924I 0.45 tolerated(0.09) benign(0.001) TCGA-DK-A3IT-01 17 4045961 4045961 G A ZZEF1 Missense_Mutation p.R77C 0.40 deleterious(0) benign(0.018) TCGA-DK-A3IT-01 17 40733844 40733844 G C FAM134C Missense_Mutation p.S463C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A3IT-01 17 42849819 42849819 G C ADAM11 Silent p.L221L 0.25 TCGA-DK-A3IT-01 17 43522898 43522898 C G PLEKHM1 Silent p.L925L 0.22 TCGA-DK-A3IT-01 17 48604701 48604701 C T MYCBPAP Silent p.L784L 0.13 TCGA-DK-A3IT-01 17 48608794 48608794 C G MYCBPAP 3'UTR 0.14 TCGA-DK-A3IT-01 17 48655779 48655779 G C CACNA1G Missense_Mutation p.D719H 0.20 tolerated(0.15) benign(0.001) TCGA-DK-A3IT-01 17 5041507 5041507 C T USP6 Silent p.L339L 0.24 TCGA-DK-A3IT-01 17 55948723 55948723 C A CUEDC1 Missense_Mutation p.L264F 0.19 deleterious(0.01) probably_damaging(0.943) TCGA-DK-A3IT-01 17 58120880 58120880 C G HEATR6 3'UTR 0.30 TCGA-DK-A3IT-01 17 58123500 58123500 C G HEATR6 Missense_Mutation p.E954Q 0.29 tolerated(0.09) benign(0.297) TCGA-DK-A3IT-01 17 58156241 58156241 G A HEATR6 Missense_Mutation p.S12F 0.12 tolerated_low_confidence(0.05) benign(0.116) TCGA-DK-A3IT-01 17 61994708 61994708 G A GH1 Silent p.I205I 0.27 TCGA-DK-A3IT-01 17 6374547 6374547 C A PITPNM3 Nonsense_Mutation p.E520* 0.30 TCGA-DK-A3IT-01 17 67132242 67132242 C G ABCA6 Missense_Mutation p.D151H 0.11 tolerated(0.08) benign(0.012) TCGA-DK-A3IT-01 17 7010563 7010563 G A ASGR2 Silent p.L166L 0.44 TCGA-DK-A3IT-01 17 72322466 72322466 G C KIF19 5'UTR 0.12 TCGA-DK-A3IT-01 17 72699199 72699199 G C CD300LF Missense_Mutation p.L141V 0.09 tolerated(1) benign(0.005) TCGA-DK-A3IT-01 17 73775024 73775024 C A H3F3B Missense_Mutation p.R50L 0.12 deleterious_low_confidence(0.01) benign(0.062) TCGA-DK-A3IT-01 17 73998125 73998125 G C CDK3 Missense_Mutation p.E73Q 0.16 tolerated(0.11) benign(0.026) TCGA-DK-A3IT-01 17 79517599 79517599 C T C17orf70 Silent p.V307V 0.14 TCGA-DK-A3IT-01 17 80274738 80274738 C G CD7 Missense_Mutation p.D68H 0.30 tolerated(0.1) benign(0.039) TCGA-DK-A3IT-01 18 43206949 43206949 G C SLC14A2 Missense_Mutation p.D120H 0.18 deleterious(0) possibly_damaging(0.89) TCGA-DK-A3IT-01 18 43216988 43216988 C T SLC14A2 Silent p.F228F 0.31 TCGA-DK-A3IT-01 18 43842948 43842948 C T C18orf25 Missense_Mutation p.S360L 0.15 benign(0.202) TCGA-DK-A3IT-01 18 55021630 55021630 C A ST8SIA3 Intron 0.33 TCGA-DK-A3IT-01 18 55351301 55351301 C G ATP8B1 Missense_Mutation p.V533L 0.15 tolerated(1) benign(0.003) TCGA-DK-A3IT-01 18 55351394 55351394 C T ATP8B1 Missense_Mutation p.D502N 0.21 deleterious(0.02) probably_damaging(1) TCGA-DK-A3IT-01 18 58038833 58038833 C T MC4R Silent p.L250L 0.43 TCGA-DK-A3IT-01 18 59855231 59855231 G T KIAA1468 Nonsense_Mutation p.E165* 0.18 TCGA-DK-A3IT-01 19 10286275 10286275 G C DNMT1 Missense_Mutation p.Q197E 0.31 tolerated_low_confidence(1) benign(0) TCGA-DK-A3IT-01 19 10287981 10287981 G C DNMT1 Missense_Mutation p.H186D 0.15 tolerated_low_confidence(0.21) possibly_damaging(0.514) TCGA-DK-A3IT-01 19 16860125 16860125 C G NWD1 Silent p.L224L 0.15 TCGA-DK-A3IT-01 19 2015370 2015370 G T BTBD2 Missense_Mutation p.F111L 0.17 deleterious(0.04) possibly_damaging(0.604) TCGA-DK-A3IT-01 19 2852858 2852858 C A ZNF555 Missense_Mutation p.F265L 0.13 tolerated(0.06) probably_damaging(0.986) TCGA-DK-A3IT-01 19 36108218 36108218 G T HAUS5 Silent p.R195R 0.38 TCGA-DK-A3IT-01 19 36394703 36394703 C G HCST Missense_Mutation p.L47V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-DK-A3IT-01 19 37211086 37211086 G C ZNF567 Missense_Mutation p.R456T 0.23 tolerated(0.08) probably_damaging(0.997) TCGA-DK-A3IT-01 19 39962359 39962359 G - SUPT5H Frame_Shift_Del p.G648Afs*7 0.26 TCGA-DK-A3IT-01 19 46345718 46345718 G A SYMPK Nonsense_Mutation p.Q293* 0.17 TCGA-DK-A3IT-01 19 46387865 46387865 C T IRF2BP1 Missense_Mutation p.E390K 0.27 tolerated(0.22) benign(0.305) TCGA-DK-A3IT-01 19 4859922 4859922 C T PLIN3 Missense_Mutation p.D61N 0.16 tolerated(0.19) possibly_damaging(0.875) TCGA-DK-A3IT-01 19 49436959 49436959 G A DHDH 5'UTR 0.42 TCGA-DK-A3IT-01 19 49658154 49658154 C T HRC Missense_Mutation p.G114E 0.09 tolerated(0.16) benign(0.109) TCGA-DK-A3IT-01 19 50881884 50881884 C A NR1H2 Nonsense_Mutation p.S193* 0.46 TCGA-DK-A3IT-01 19 57888951 57888951 C G ZNF547 Missense_Mutation p.Q203E 0.42 deleterious(0.03) benign(0.026) TCGA-DK-A3IT-01 19 58048854 58048854 G A ZNF549 Missense_Mutation p.R161K 0.29 tolerated(0.8) benign(0.045) TCGA-DK-A3IT-01 19 58367529 58367529 C T CTD-2583A14.10 Missense_Mutation p.L31F 0.16 deleterious(0) probably_damaging(0.983) TCGA-DK-A3IT-01 19 6392882 6392882 G A GTF2F1 Silent p.V15V 0.19 TCGA-DK-A3IT-01 19 8436324 8436324 C G ANGPTL4 Silent p.P319P 0.18 TCGA-DK-A3IT-01 19 9062870 9062870 C G MUC16 Missense_Mutation p.M8192I 0.25 unknown(0) TCGA-DK-A3IT-01 1 110257876 110257876 C T GSTM5 Intron 0.41 TCGA-DK-A3IT-01 1 11082686 11082686 C G TARDBP Missense_Mutation p.S407C 0.16 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DK-A3IT-01 1 11151547 11151547 C A EXOSC10 Intron 0.30 TCGA-DK-A3IT-01 1 115262243 115262243 G A CSDE1 Nonsense_Mutation p.Q771* 0.18 TCGA-DK-A3IT-01 1 145301812 145301812 G A NBPF10 Missense_Mutation p.E361K 0.05 benign(0.193) TCGA-DK-A3IT-01 1 146672879 146672879 G C FMO5 Silent p.V346V 0.08 TCGA-DK-A3IT-01 1 147092562 147092562 G A BCL9 Silent p.T867T 0.17 TCGA-DK-A3IT-01 1 150687152 150687152 G A HORMAD1 Missense_Mutation p.L61F 0.19 tolerated(0.1) benign(0.151) TCGA-DK-A3IT-01 1 150923439 150923439 G C SETDB1 Missense_Mutation p.E696Q 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-DK-A3IT-01 1 151001306 151001306 C G PRUNE Missense_Mutation p.F273L 0.13 tolerated(0.07) benign(0.077) TCGA-DK-A3IT-01 1 152081239 152081239 C G TCHH Missense_Mutation p.R1485T 0.22 unknown(0) TCGA-DK-A3IT-01 1 153713793 153713793 C A INTS3 Silent p.I89I 0.09 TCGA-DK-A3IT-01 1 154841844 154841844 G C KCNN3 Missense_Mutation p.I199M 0.09 tolerated(0.2) probably_damaging(0.995) TCGA-DK-A3IT-01 1 156215947 156215947 G A PAQR6 5'UTR 0.33 TCGA-DK-A3IT-01 1 156237348 156237348 C G SMG5 Missense_Mutation p.E344Q 0.09 tolerated(0.26) probably_damaging(0.986) TCGA-DK-A3IT-01 1 156386657 156386657 C G C1orf61 Splice_Site 0.27 TCGA-DK-A3IT-01 1 156617355 156617355 G A BCAN Silent p.G174G 0.25 TCGA-DK-A3IT-01 1 156640696 156640696 G A NES Missense_Mutation p.A1095V 0.24 tolerated(0.72) benign(0.002) TCGA-DK-A3IT-01 1 15871058 15871058 C A DNAJC16 Missense_Mutation p.P247T 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 1 158724899 158724899 G A OR6K6 Silent p.E98E 0.24 TCGA-DK-A3IT-01 1 15890809 15890809 C G DNAJC16 Missense_Mutation p.S518C 0.17 tolerated(0.17) benign(0.264) TCGA-DK-A3IT-01 1 15892682 15892682 C G DNAJC16 Intron 0.12 TCGA-DK-A3IT-01 1 160098495 160098495 G A ATP1A2 Silent p.K357K 0.22 TCGA-DK-A3IT-01 1 165370572 165370572 G C RXRG Missense_Mutation p.F440L 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-DK-A3IT-01 1 168665804 168665804 C T DPT Missense_Mutation p.E197K 0.11 deleterious_low_confidence(0.05) probably_damaging(0.953) TCGA-DK-A3IT-01 1 169930298 169930298 C G KIFAP3 Missense_Mutation p.E688Q 0.41 deleterious(0.01) probably_damaging(0.917) TCGA-DK-A3IT-01 1 170633362 170633362 G A PRRX1 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.38) TCGA-DK-A3IT-01 1 180241097 180241097 C G LHX4 Missense_Mutation p.S245C 0.11 tolerated(0.06) possibly_damaging(0.52) TCGA-DK-A3IT-01 1 190195374 190195374 A T BRINP3 Missense_Mutation p.S267T 0.24 tolerated(0.14) benign(0.34) TCGA-DK-A3IT-01 1 200594175 200594175 C G KIF14 5'Flank 0.21 TCGA-DK-A3IT-01 1 202920093 202920093 C G ADIPOR1 Missense_Mutation p.E36Q 0.10 tolerated(0.4) benign(0.057) TCGA-DK-A3IT-01 1 203192738 203192738 G C CHIT1 Missense_Mutation p.S122W 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 1 203680026 203680026 G A ATP2B4 Silent p.R607R 0.35 TCGA-DK-A3IT-01 1 203830860 203830860 C G SNRPE Intron 0.24 TCGA-DK-A3IT-01 1 204135397 204135397 G A REN Missense_Mutation p.R9C 0.14 tolerated(0.21) benign(0.004) TCGA-DK-A3IT-01 1 205896660 205896660 G C SLC26A9 Missense_Mutation p.S392C 0.16 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IT-01 1 210014333 210014333 C G DIEXF Missense_Mutation p.S473C 0.20 deleterious(0) probably_damaging(0.945) TCGA-DK-A3IT-01 1 212190334 212190334 C T INTS7 Missense_Mutation p.E135K 0.22 deleterious(0) probably_damaging(0.933) TCGA-DK-A3IT-01 1 223983678 223983678 C T TP53BP2 Missense_Mutation p.E855K 0.14 tolerated(0.21) benign(0.101) TCGA-DK-A3IT-01 1 23395118 23395118 C T KDM1A Silent p.F422F 0.38 TCGA-DK-A3IT-01 1 237806646 237806646 G C RYR2 Missense_Mutation p.G2414A 0.21 probably_damaging(0.999) TCGA-DK-A3IT-01 1 248263467 248263467 C T OR2L13 Missense_Mutation p.L264F 0.30 tolerated(0.35) benign(0.107) TCGA-DK-A3IT-01 1 249142668 249142668 G C ZNF672 Missense_Mutation p.E399Q 0.35 tolerated(0.32) benign(0.045) TCGA-DK-A3IT-01 1 27089501 27089528 CAATGCCAACTACCCCAGTGCAGGCATG AAT ARID1A Frame_Shift_Del p.N820Mfs*5 0.34 TCGA-DK-A3IT-01 1 28907553 28907553 C A TRNAU1AP 3'Flank 0.19 TCGA-DK-A3IT-01 1 35250591 35250591 C T GJB3 Silent p.L76L 0.32 TCGA-DK-A3IT-01 1 35885249 35885249 G C ZMYM4 Missense_Mutation p.E1540Q 0.26 deleterious(0.04) benign(0.283) TCGA-DK-A3IT-01 1 38304297 38304297 C T MTF1 Missense_Mutation p.R260Q 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-DK-A3IT-01 1 40529930 40529930 C G CAP1 Nonsense_Mutation p.S109* 0.23 TCGA-DK-A3IT-01 1 46651197 46651197 C G TSPAN1 Missense_Mutation p.L240V 0.16 tolerated(0.08) benign(0.395) TCGA-DK-A3IT-01 1 48764342 48764342 G T SPATA6 3'UTR 0.32 TCGA-DK-A3IT-01 1 52824767 52824767 C G CC2D1B Missense_Mutation p.E397Q 0.16 tolerated(0.19) probably_damaging(0.942) TCGA-DK-A3IT-01 1 52825538 52825538 C G CC2D1B Missense_Mutation p.E261Q 0.12 tolerated(0.25) benign(0.101) TCGA-DK-A3IT-01 1 59247698 59247698 C A JUN 3'UTR 0.48 TCGA-DK-A3IT-01 1 6500422 6500422 G A ESPN Silent p.P199P 0.22 TCGA-DK-A3IT-01 1 6534204 6534204 C G PLEKHG5 Missense_Mutation p.E233Q 0.20 deleterious(0) benign(0.022) TCGA-DK-A3IT-01 1 75065450 75065450 G A C1orf173 Missense_Mutation p.P552L 0.28 tolerated(0.34) benign(0.098) TCGA-DK-A3IT-01 1 78034131 78034131 G C ZZZ3 Missense_Mutation p.I784M 0.48 tolerated(0.43) benign(0.079) TCGA-DK-A3IT-01 1 78187599 78187599 G A USP33 Missense_Mutation p.S556L 0.30 deleterious(0) possibly_damaging(0.589) TCGA-DK-A3IT-01 1 85279670 85279670 C G LPAR3 Missense_Mutation p.M307I 0.19 tolerated(1) benign(0.004) TCGA-DK-A3IT-01 1 87208005 87208005 C A SH3GLB1 Silent p.I313I 0.42 TCGA-DK-A3IT-01 1 90400866 90400866 G C LRRC8D Missense_Mutation p.E747Q 0.19 deleterious(0.05) possibly_damaging(0.701) TCGA-DK-A3IT-01 1 91182500 91182500 G A BARHL2 Missense_Mutation p.H85Y 0.36 tolerated_low_confidence(0.37) unknown(0) TCGA-DK-A3IT-01 1 94360257 94360257 G A GCLM Missense_Mutation p.L190F 0.36 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IT-01 20 19977329 19977329 A G RIN2 Missense_Mutation p.Y785C 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 20 30897849 30897849 G A KIF3B Missense_Mutation p.G90E 0.29 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IT-01 20 31767433 31767433 C A BPIFA2 Missense_Mutation p.F223L 0.29 tolerated(1) benign(0.022) TCGA-DK-A3IT-01 20 31805230 31805230 C G BPIFA3 5'UTR 0.38 TCGA-DK-A3IT-01 20 32217653 32217653 G A CBFA2T2 Silent p.L396L 0.12 TCGA-DK-A3IT-01 20 33874290 33874290 G A FAM83C 3'UTR 0.26 TCGA-DK-A3IT-01 20 376874 376874 C T TRIB3 Missense_Mutation p.S206F 0.17 deleterious(0) benign(0.438) TCGA-DK-A3IT-01 20 45354826 45354826 C T SLC2A10 Missense_Mutation p.S384L 0.16 tolerated(0.31) benign(0) TCGA-DK-A3IT-01 20 60575694 60575694 G A TAF4 Missense_Mutation p.S857F 0.41 probably_damaging(0.996) TCGA-DK-A3IT-01 20 60900379 60900379 G T LAMA5 Nonsense_Mutation p.S1841* 0.33 TCGA-DK-A3IT-01 20 61541311 61541311 C T DIDO1 Missense_Mutation p.E301K 0.27 probably_damaging(0.957) TCGA-DK-A3IT-01 20 61907473 61907473 C G ARFGAP1 Missense_Mutation p.Q31E 0.34 deleterious(0) probably_damaging(0.979) TCGA-DK-A3IT-01 20 61936830 61936830 G C COL20A1 Silent p.L85L 0.43 TCGA-DK-A3IT-01 21 30255367 30255367 G A N6AMT1 Missense_Mutation p.S54L 0.18 possibly_damaging(0.606) TCGA-DK-A3IT-01 21 33036175 33036175 C G SOD1 Missense_Mutation p.H49D 0.21 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IT-01 21 33039670 33039670 C T SOD1 Silent p.I113I 0.11 TCGA-DK-A3IT-01 21 33678894 33678894 C T MRAP Intron 0.41 TCGA-DK-A3IT-01 21 34927106 34927106 C T SON Missense_Mutation p.H1857Y 0.22 unknown(0) TCGA-DK-A3IT-01 21 37603182 37603182 C G DOPEY2 Missense_Mutation p.F700L 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A3IT-01 21 38126702 38126702 G C HLCS Missense_Mutation p.L676V 0.23 deleterious(0) probably_damaging(0.972) TCGA-DK-A3IT-01 21 38463619 38463619 G C TTC3 Silent p.L169L 0.14 TCGA-DK-A3IT-01 21 40627734 40627734 C G BRWD1 Missense_Mutation p.D698H 0.17 deleterious(0) possibly_damaging(0.751) TCGA-DK-A3IT-01 21 45948429 45948429 C T TSPEAR Silent p.P276P 0.53 TCGA-DK-A3IT-01 21 46074247 46074247 G C KRTAP12-4 Missense_Mutation p.F95L 0.12 deleterious(0) benign(0.001) TCGA-DK-A3IT-01 22 19808787 19808787 C G GNB1L Missense_Mutation p.G31A 0.18 tolerated(0.33) benign(0.044) TCGA-DK-A3IT-01 22 24175882 24175882 G T SMARCB1 Missense_Mutation p.R370S 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 22 29138168 29138168 G T HSCB Missense_Mutation p.D29Y 0.18 tolerated(0.05) benign(0.058) TCGA-DK-A3IT-01 22 30722721 30722721 G T TBC1D10A Missense_Mutation p.F50L 0.37 tolerated(0.89) benign(0.002) TCGA-DK-A3IT-01 22 30860840 30860840 C T SEC14L3 Missense_Mutation p.E211K 0.31 deleterious(0.01) possibly_damaging(0.741) TCGA-DK-A3IT-01 22 38609853 38609853 C A MAFF 5'UTR 0.33 TCGA-DK-A3IT-01 22 40661039 40661039 C G TNRC6B Missense_Mutation p.Q269E 0.10 tolerated(1) benign(0.028) TCGA-DK-A3IT-01 22 40662821 40662821 C T TNRC6B Nonsense_Mutation p.Q863* 0.18 TCGA-DK-A3IT-01 22 51019955 51019955 G A CHKB Nonsense_Mutation p.R159* 0.23 TCGA-DK-A3IT-01 2 100006265 100006265 G A EIF5B Missense_Mutation p.E786K 0.38 probably_damaging(0.973) TCGA-DK-A3IT-01 2 100006708 100006708 G C EIF5B Missense_Mutation p.E810D 0.28 benign(0.241) TCGA-DK-A3IT-01 2 100007070 100007070 G C EIF5B Missense_Mutation p.E884Q 0.23 probably_damaging(0.979) TCGA-DK-A3IT-01 2 10008450 10008450 G A TAF1B Missense_Mutation p.E149K 0.29 tolerated(0.06) possibly_damaging(0.51) TCGA-DK-A3IT-01 2 103322367 103322367 A G SLC9A2 Silent p.L680L 0.30 TCGA-DK-A3IT-01 2 107446552 107446552 G T ST6GAL2 Missense_Mutation p.Q430K 0.23 probably_damaging(0.919) TCGA-DK-A3IT-01 2 109382668 109382668 C A RANBP2 Silent p.I1891I 0.10 TCGA-DK-A3IT-01 2 109383783 109383783 C G RANBP2 Nonsense_Mutation p.S2263* 0.14 TCGA-DK-A3IT-01 2 113830274 113830274 C G IL1F10 5'UTR 0.23 TCGA-DK-A3IT-01 2 11728988 11728988 G A GREB1 Missense_Mutation p.A426T 0.35 tolerated(0.41) benign(0.012) TCGA-DK-A3IT-01 2 122182786 122182786 G A CLASP1 Missense_Mutation p.S714L 0.30 tolerated(0.14) benign(0.027) TCGA-DK-A3IT-01 2 166514277 166514277 C G CSRNP3 Missense_Mutation p.S52C 0.27 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IT-01 2 169313067 169313067 G T CERS6 Missense_Mutation p.D37Y 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IT-01 2 171702544 171702544 G C GAD1 Missense_Mutation p.E325Q 0.16 deleterious(0) benign(0.427) TCGA-DK-A3IT-01 2 172691273 172691273 G C SLC25A12 Missense_Mutation p.L239V 0.24 tolerated(0.43) benign(0.012) TCGA-DK-A3IT-01 2 178097233 178097233 G C NFE2L2 Missense_Mutation p.Q161E 0.12 tolerated(0.51) benign(0.009) TCGA-DK-A3IT-01 2 182363467 182363467 G C ITGA4 Missense_Mutation p.R553T 0.18 tolerated(0.56) benign(0.002) TCGA-DK-A3IT-01 2 190640249 190640249 C G ORMDL1 Intron 0.11 TCGA-DK-A3IT-01 2 190924966 190924966 C T MSTN Missense_Mutation p.R190Q 0.15 tolerated(0.08) benign(0.094) TCGA-DK-A3IT-01 2 190925004 190925004 G C MSTN Missense_Mutation p.I177M 0.04 tolerated(0.76) benign(0.01) TCGA-DK-A3IT-01 2 190926953 190926953 C G MSTN Missense_Mutation p.E124Q 0.16 tolerated(0.08) possibly_damaging(0.529) TCGA-DK-A3IT-01 2 190927191 190927191 C A MSTN Missense_Mutation p.W44C 0.13 tolerated(0.18) benign(0.091) TCGA-DK-A3IT-01 2 1914104 1914104 C G MYT1L Silent p.P573P 0.27 TCGA-DK-A3IT-01 2 203071942 203071942 G C SUMO1 3'UTR 0.21 TCGA-DK-A3IT-01 2 203071955 203071955 G C SUMO1 3'UTR 0.20 TCGA-DK-A3IT-01 2 204571328 204571328 C G CD28 5'UTR 0.14 TCGA-DK-A3IT-01 2 216002993 216002993 G A ABCA12 5'UTR 0.24 TCGA-DK-A3IT-01 2 216177324 216177324 C T ATIC Silent p.L41L 0.37 TCGA-DK-A3IT-01 2 220033453 220033453 G A SLC23A3 Missense_Mutation p.P207S 0.18 deleterious(0.05) probably_damaging(0.971) TCGA-DK-A3IT-01 2 220034633 220034633 G T SLC23A3 Missense_Mutation p.P25Q 0.10 tolerated_low_confidence(0.19) benign(0.008) TCGA-DK-A3IT-01 2 220034634 220034634 G A SLC23A3 Missense_Mutation p.P25S 0.10 tolerated_low_confidence(0.26) benign(0.004) TCGA-DK-A3IT-01 2 230636274 230636274 G C TRIP12 Silent p.V1848V 0.09 TCGA-DK-A3IT-01 2 234079180 234079180 G A INPP5D Silent p.Q598Q 0.31 TCGA-DK-A3IT-01 2 241631315 241631315 C A AQP12A 5'UTR 0.26 TCGA-DK-A3IT-01 2 26204353 26204353 T C KIF3C Missense_Mutation p.Y145C 0.31 probably_damaging(1) TCGA-DK-A3IT-01 2 26204403 26204403 G T KIF3C Missense_Mutation p.F128L 0.31 probably_damaging(0.996) TCGA-DK-A3IT-01 2 28531081 28531081 G A BRE Intron 0.13 TCGA-DK-A3IT-01 2 32461380 32461380 C A NLRC4 Silent p.L850L 0.31 TCGA-DK-A3IT-01 2 43919692 43919692 C T PLEKHH2 Nonsense_Mutation p.Q76* 0.13 TCGA-DK-A3IT-01 2 45801777 45801777 G A SRBD1 Silent p.F386F 0.33 TCGA-DK-A3IT-01 2 54122166 54122166 C T PSME4 Missense_Mutation p.R1297K 0.26 tolerated(0.5) benign(0.033) TCGA-DK-A3IT-01 2 55615938 55615938 C T CCDC88A Silent p.V83V 0.28 TCGA-DK-A3IT-01 2 64083559 64083559 G C UGP2 Missense_Mutation p.E47Q 0.14 tolerated(0.42) benign(0.011) TCGA-DK-A3IT-01 2 66795861 66795861 C T MEIS1 Nonsense_Mutation p.Q363* 0.27 TCGA-DK-A3IT-01 2 70068071 70068071 C T GMCL1 Intron 0.16 TCGA-DK-A3IT-01 2 70188237 70188237 C T ASPRV1 Missense_Mutation p.G195D 0.38 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IT-01 2 70188460 70188460 C G ASPRV1 Missense_Mutation p.E121Q 0.19 deleterious(0.03) probably_damaging(0.962) TCGA-DK-A3IT-01 2 70188511 70188511 C G ASPRV1 Missense_Mutation p.E104Q 0.23 tolerated(0.07) possibly_damaging(0.717) TCGA-DK-A3IT-01 2 70314840 70314840 G C PCBP1 5'UTR 0.38 TCGA-DK-A3IT-01 2 71188791 71188791 C T ATP6V1B1 Silent p.V251V 0.34 TCGA-DK-A3IT-01 2 85621905 85621905 C G CAPG 3'UTR 0.22 TCGA-DK-A3IT-01 2 85622017 85622017 C T CAPG Silent p.%3D 0.26 TCGA-DK-A3IT-01 2 85622055 85622055 C A CAPG Missense_Mutation p.E336D 0.25 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 2 85622658 85622658 C T CAPG Intron 0.32 TCGA-DK-A3IT-01 2 85625194 85625194 C T CAPG Missense_Mutation p.D281N 0.29 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 2 85625197 85625197 C T CAPG Missense_Mutation p.D280N 0.27 tolerated(0.13) probably_damaging(0.997) TCGA-DK-A3IT-01 2 85625233 85625233 C T CAPG Missense_Mutation p.D268N 0.30 tolerated(0.06) benign(0.064) TCGA-DK-A3IT-01 2 85625866 85625866 C A CAPG Nonsense_Mutation p.E236* 0.19 TCGA-DK-A3IT-01 2 87017470 87017470 G T CD8A Missense_Mutation p.F128L 0.28 tolerated(0.4) benign(0.037) TCGA-DK-A3IT-01 2 98409038 98409038 C T TMEM131 Missense_Mutation p.E1319K 0.23 tolerated_low_confidence(0.19) benign(0.054) TCGA-DK-A3IT-01 3 111686606 111686606 G A PHLDB2 Missense_Mutation p.E1084K 0.21 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IT-01 3 113376375 113376375 G A KIAA2018 Missense_Mutation p.S1385L 0.18 benign(0.004) TCGA-DK-A3IT-01 3 114070334 114070334 C T ZBTB20 Silent p.V197V 0.10 TCGA-DK-A3IT-01 3 132068810 132068810 G C ACPP Missense_Mutation p.Q276H 0.12 tolerated(0.15) benign(0.002) TCGA-DK-A3IT-01 3 134278032 134278032 G A CEP63 Missense_Mutation p.E572K 0.34 tolerated(0.3) benign(0.053) TCGA-DK-A3IT-01 3 13432797 13432797 G C NUP210 Missense_Mutation p.F149L 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IT-01 3 137822364 137822364 G T DZIP1L Silent p.I150I 0.30 TCGA-DK-A3IT-01 3 160148850 160148850 C T SMC4 Missense_Mutation p.R991C 0.26 deleterious(0.04) possibly_damaging(0.849) TCGA-DK-A3IT-01 3 169654187 169654187 C T SAMD7 Nonsense_Mutation p.R368* 0.14 TCGA-DK-A3IT-01 3 186370280 186370280 G A FETUB Missense_Mutation p.E337K 0.15 deleterious(0.03) possibly_damaging(0.489) TCGA-DK-A3IT-01 3 19925987 19925987 C T EFHB Missense_Mutation p.R685Q 0.31 deleterious(0.01) possibly_damaging(0.63) TCGA-DK-A3IT-01 3 24003672 24003672 C T NR1D2 Missense_Mutation p.S241F 0.28 deleterious(0.02) benign(0.1) TCGA-DK-A3IT-01 3 24003755 24003755 C G NR1D2 Missense_Mutation p.Q269E 0.18 deleterious(0.02) probably_damaging(0.952) TCGA-DK-A3IT-01 3 38136538 38136538 C A DLEC1 Missense_Mutation p.F696L 0.22 deleterious(0.03) probably_damaging(0.95) TCGA-DK-A3IT-01 3 38136557 38136557 C T DLEC1 Missense_Mutation p.H703Y 0.22 tolerated(0.72) benign(0.002) TCGA-DK-A3IT-01 3 38138129 38138129 G A DLEC1 Silent p.V747V 0.36 TCGA-DK-A3IT-01 3 45017740 45017740 G A EXOSC7 5'UTR 0.29 TCGA-DK-A3IT-01 3 48658340 48658340 G T TMEM89 Missense_Mutation p.H139N 0.27 deleterious(0.03) possibly_damaging(0.9) TCGA-DK-A3IT-01 3 48675652 48675652 C A CELSR3 Nonsense_Mutation p.E3309* 0.28 TCGA-DK-A3IT-01 3 48694197 48694197 G C CELSR3 Missense_Mutation p.R1445G 0.20 tolerated(0.74) benign(0.1) TCGA-DK-A3IT-01 3 48698429 48698429 C T CELSR3 Missense_Mutation p.E547K 0.36 deleterious(0.04) benign(0.426) TCGA-DK-A3IT-01 3 49094498 49094498 G A QRICH1 Missense_Mutation p.L379F 0.29 deleterious(0) possibly_damaging(0.648) TCGA-DK-A3IT-01 3 49212384 49212384 T G KLHDC8B Missense_Mutation p.F251V 0.13 deleterious(0) possibly_damaging(0.871) TCGA-DK-A3IT-01 3 49362149 49362149 C G USP4 Missense_Mutation p.Q227H 0.12 deleterious(0.03) benign(0.046) TCGA-DK-A3IT-01 3 49362441 49362441 G AA USP4 Frame_Shift_Ins p.N174* 0.21 TCGA-DK-A3IT-01 3 49362462 49362462 C A USP4 Missense_Mutation p.E166D 0.14 tolerated(0.12) possibly_damaging(0.538) TCGA-DK-A3IT-01 3 49568599 49568599 G A DAG1 Missense_Mutation p.E219K 0.31 tolerated(0.3) benign(0.027) TCGA-DK-A3IT-01 3 49691151 49691151 C A BSN Missense_Mutation p.P1388T 0.33 unknown(0) TCGA-DK-A3IT-01 3 49756782 49756782 G C AMIGO3 Missense_Mutation p.I39M 0.11 deleterious(0.01) possibly_damaging(0.534) TCGA-DK-A3IT-01 3 49759447 49759447 G A GMPPB Missense_Mutation p.S301F 0.10 deleterious(0) probably_damaging(0.978) TCGA-DK-A3IT-01 3 49927421 49927421 C G MST1R Missense_Mutation p.D1295H 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 3 51979599 51979599 G T PARP3 Missense_Mutation p.R324L 0.35 tolerated(0.37) benign(0.029) TCGA-DK-A3IT-01 3 57649368 57649368 G C DENND6A Missense_Mutation p.Q170E 0.27 deleterious(0.02) probably_damaging(0.977) TCGA-DK-A3IT-01 3 64607917 64607917 C A ADAMTS9 Missense_Mutation p.W881C 0.34 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 3 69124658 69124658 G C UBA3 Missense_Mutation p.L63V 0.27 tolerated(0.21) benign(0.148) TCGA-DK-A3IT-01 3 69246184 69246184 G C FRMD4B Nonsense_Mutation p.S320* 0.39 TCGA-DK-A3IT-01 3 71743081 71743081 C G EIF4E3 Missense_Mutation p.W139C 0.19 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 3 97852160 97852160 C G OR5H1 Missense_Mutation p.Q207E 0.13 deleterious(0.02) possibly_damaging(0.734) TCGA-DK-A3IT-01 3 9885243 9885243 G C RPUSD3 Silent p.P56P 0.29 TCGA-DK-A3IT-01 4 169433469 169433469 C G PALLD Missense_Mutation p.R272G 0.09 tolerated(0.1) possibly_damaging(0.647) TCGA-DK-A3IT-01 4 2746230 2746230 G A TNIP2 Missense_Mutation p.L304F 0.34 deleterious(0) possibly_damaging(0.878) TCGA-DK-A3IT-01 4 53728708 53728708 G A RASL11B Missense_Mutation p.E12K 0.18 deleterious(0.01) benign(0.207) TCGA-DK-A3IT-01 4 87622590 87622590 C G PTPN13 Missense_Mutation p.F277L 0.40 tolerated(0.68) benign(0.008) TCGA-DK-A3IT-01 5 10258507 10258507 G A CCT5 Missense_Mutation p.D245N 0.13 tolerated(0.41) benign(0.018) TCGA-DK-A3IT-01 5 110428137 110428137 G C WDR36 Missense_Mutation p.A51P 0.14 tolerated_low_confidence(0.19) benign(0) TCGA-DK-A3IT-01 5 112227372 112227372 G C ZRSR1 Missense_Mutation p.K12N 0.27 tolerated_low_confidence(0.24) benign(0.403) TCGA-DK-A3IT-01 5 1245984 1245984 G C SLC6A18 Missense_Mutation p.E560Q 0.12 tolerated(0.18) benign(0.395) TCGA-DK-A3IT-01 5 126771180 126771180 A G MEGF10 Silent p.Q701Q 0.16 TCGA-DK-A3IT-01 5 133914845 133914845 G A JADE2 Silent p.E737E 0.13 TCGA-DK-A3IT-01 5 134029515 134029515 G A SEC24A Silent p.L626L 0.15 TCGA-DK-A3IT-01 5 13708301 13708301 G A DNAH5 Silent p.I4423I 0.26 TCGA-DK-A3IT-01 5 139916980 139916980 C G ANKHD1 Missense_Mutation p.S2345C 0.21 probably_damaging(0.947) TCGA-DK-A3IT-01 5 139941016 139941016 C A APBB3 Nonsense_Mutation p.E263* 0.14 TCGA-DK-A3IT-01 5 140257094 140257094 G A PCDHA12 Silent p.S679S 0.07 TCGA-DK-A3IT-01 5 140537635 140537635 C T PCDHB17 3'UTR 0.34 TCGA-DK-A3IT-01 5 140795020 140795020 G A PCDHGA10 Missense_Mutation p.E760K 0.34 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-DK-A3IT-01 5 141324937 141324937 G C PCDH12 3'UTR 0.40 TCGA-DK-A3IT-01 5 141334867 141334867 G C PCDH12 Missense_Mutation p.F850L 0.20 tolerated(0.7) benign(0.128) TCGA-DK-A3IT-01 5 141336269 141336269 G A PCDH12 Missense_Mutation p.S383L 0.17 deleterious(0) probably_damaging(0.99) TCGA-DK-A3IT-01 5 175811345 175811345 G C NOP16 Intron 0.11 TCGA-DK-A3IT-01 5 176938749 176938749 C G DDX41 3'UTR 0.44 TCGA-DK-A3IT-01 5 35965895 35965895 C T UGT3A1 Missense_Mutation p.A146T 0.37 tolerated(0.3) benign(0.021) TCGA-DK-A3IT-01 5 38952313 38952313 C A RICTOR Nonsense_Mutation p.E1038* 0.46 TCGA-DK-A3IT-01 5 52979077 52979077 G C NDUFS4 3'UTR 0.23 TCGA-DK-A3IT-01 5 54721117 54721117 C G PPAP2A Missense_Mutation p.E259Q 0.14 tolerated(0.49) benign(0.013) TCGA-DK-A3IT-01 5 54721830 54721830 C G PPAP2A Missense_Mutation p.R197T 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 5 54737722 54737722 G C PPAP2A Nonsense_Mutation p.S170* 0.36 TCGA-DK-A3IT-01 5 98215419 98215419 G C CHD1 Nonsense_Mutation p.S1025* 0.20 TCGA-DK-A3IT-01 6 118588187 118588187 G A SLC35F1 Silent p.V169V 0.15 TCGA-DK-A3IT-01 6 135511379 135511379 G C MYB Missense_Mutation p.E141Q 0.14 deleterious(0) benign(0.206) TCGA-DK-A3IT-01 6 135539063 135539063 C T MYB Missense_Mutation p.S744F 0.12 deleterious(0) possibly_damaging(0.888) TCGA-DK-A3IT-01 6 152631862 152631862 C G SYNE1 Missense_Mutation p.M5619I 0.37 benign(0) TCGA-DK-A3IT-01 6 152740829 152740829 C G SYNE1 Missense_Mutation p.E1766Q 0.23 benign(0.1) TCGA-DK-A3IT-01 6 161527697 161527697 G C MAP3K4 Missense_Mutation p.L1336F 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-DK-A3IT-01 6 168226338 168226338 C T MLLT4 5'Flank 0.34 TCGA-DK-A3IT-01 6 24486344 24486344 C T GPLD1 Missense_Mutation p.E38K 0.14 deleterious(0.01) possibly_damaging(0.676) TCGA-DK-A3IT-01 6 26022231 26022231 C T HIST1H4A 3'UTR 0.24 TCGA-DK-A3IT-01 6 26056443 26056443 C G HIST1H1C Missense_Mutation p.D72H 0.17 deleterious(0.02) possibly_damaging(0.887) TCGA-DK-A3IT-01 6 26108038 26108038 C A HIST1H1T Missense_Mutation p.G95V 0.29 deleterious(0) probably_damaging(0.988) TCGA-DK-A3IT-01 6 27100906 27100906 C T HIST1H2AG Missense_Mutation p.S19F 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A3IT-01 6 27805994 27805994 C T HIST1H2AK Missense_Mutation p.E42K 0.24 tolerated_low_confidence(0.1) benign(0.247) TCGA-DK-A3IT-01 6 30865172 30865172 G C DDR1 Missense_Mutation p.E678Q 0.22 deleterious(0) probably_damaging(0.964) TCGA-DK-A3IT-01 6 31382788 31382788 G A MICA Splice_Site 0.10 TCGA-DK-A3IT-01 6 31635728 31635728 G T CSNK2B-LY6G5B-1181 Missense_Mutation p.M52I 0.14 tolerated(0.2) benign(0.027) TCGA-DK-A3IT-01 6 31640136 31640136 G A CSNK2B-LY6G5B-1181 3'UTR 0.12 TCGA-DK-A3IT-01 6 31657862 31657862 C T ABHD16A Missense_Mutation p.G317E 0.13 deleterious(0) possibly_damaging(0.852) TCGA-DK-A3IT-01 6 43096807 43096807 C G PTK7 Missense_Mutation p.P66A 0.42 tolerated(0.24) benign(0.303) TCGA-DK-A3IT-01 6 43516011 43516011 G A XPO5 Nonsense_Mutation p.Q683* 0.19 TCGA-DK-A3IT-01 6 47775996 47775996 C T OPN5 Missense_Mutation p.S288F 0.16 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IT-01 6 64390047 64390047 C T PHF3 Missense_Mutation p.R131C 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 6 82927697 82927697 C G IBTK Missense_Mutation p.R469T 0.21 tolerated(0.06) benign(0.024) TCGA-DK-A3IT-01 7 100679360 100679360 C G MUC17 Missense_Mutation p.P1555A 0.14 unknown(0) TCGA-DK-A3IT-01 7 100679868 100679868 C G MUC17 Missense_Mutation p.S1724C 0.13 probably_damaging(0.964) TCGA-DK-A3IT-01 7 101923386 101923386 G C CUX1 Missense_Mutation p.D578H 0.27 deleterious(0) probably_damaging(0.967) TCGA-DK-A3IT-01 7 120385895 120385895 A G KCND2 Missense_Mutation p.N510S 0.35 tolerated_low_confidence(0.8) benign(0.026) TCGA-DK-A3IT-01 7 121716499 121716499 G C AASS 3'UTR 0.12 TCGA-DK-A3IT-01 7 130353957 130353957 G T TSGA13 Nonsense_Mutation p.S242* 0.29 TCGA-DK-A3IT-01 7 139706905 139706905 C G TBXAS1 Missense_Mutation p.F430L 0.31 deleterious(0.01) benign(0.232) TCGA-DK-A3IT-01 7 142111558 142111558 G T TRBV5-7 Missense_Mutation p.Q60K 0.14 tolerated(0.08) benign(0.177) TCGA-DK-A3IT-01 7 143771967 143771967 C T OR2A25 Missense_Mutation p.H219Y 0.27 tolerated(1) benign(0.013) TCGA-DK-A3IT-01 7 149129883 149129883 C G ZNF777 Missense_Mutation p.E494Q 0.21 tolerated(0.24) benign(0.259) TCGA-DK-A3IT-01 7 151945439 151945439 G A KMT2C Missense_Mutation p.L694F 0.10 benign(0.058) TCGA-DK-A3IT-01 7 24705264 24705264 G C MPP6 Missense_Mutation p.E281Q 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A3IT-01 7 2579517 2579517 C G BRAT1 Silent p.L467L 0.45 TCGA-DK-A3IT-01 7 28534602 28534602 G C CREB5 Missense_Mutation p.D52H 0.35 deleterious(0) probably_damaging(0.979) TCGA-DK-A3IT-01 7 30102287 30102287 G C PLEKHA8 Splice_Site p.X410_splice 0.21 TCGA-DK-A3IT-01 7 33185904 33185904 C G BBS9 Missense_Mutation p.L14V 0.26 tolerated(0.35) benign(0.237) TCGA-DK-A3IT-01 7 45018586 45018586 C A MYO1G 5'UTR 0.16 TCGA-DK-A3IT-01 7 45743204 45743204 C G ADCY1 Silent p.L859L 0.24 TCGA-DK-A3IT-01 7 57188109 57188109 G A ZNF479 Missense_Mutation p.S338L 0.18 deleterious(0.02) benign(0.016) TCGA-DK-A3IT-01 7 6098634 6098634 G C EIF2AK1 Missense_Mutation p.I27M 0.25 tolerated(0.1) probably_damaging(0.986) TCGA-DK-A3IT-01 7 64530046 64530046 C G SNORA22 3'Flank 0.11 TCGA-DK-A3IT-01 7 74173136 74173136 C G GTF2I Missense_Mutation p.Q989E 0.27 tolerated_low_confidence(0.22) benign(0.003) TCGA-DK-A3IT-01 7 81346648 81346648 C G HGF Silent p.L435L 0.33 TCGA-DK-A3IT-01 7 92143172 92143172 C G PEX1 Missense_Mutation p.R450T 0.26 tolerated(0.59) benign(0.001) TCGA-DK-A3IT-01 7 99091818 99091818 G T ZNF394 Missense_Mutation p.F340L 0.24 tolerated(0.57) benign(0.002) TCGA-DK-A3IT-01 7 99161683 99161683 G A ZNF655 Intron 0.22 TCGA-DK-A3IT-01 8 118184923 118184923 C G SLC30A8 3'UTR 0.11 TCGA-DK-A3IT-01 8 144899273 144899273 G A PUF60 Missense_Mutation p.S396L 0.13 tolerated(0.36) benign(0.006) TCGA-DK-A3IT-01 8 144921499 144921499 G C NRBP2 Missense_Mutation p.I189M 0.08 deleterious(0.03) possibly_damaging(0.701) TCGA-DK-A3IT-01 8 144999683 144999683 C T PLEC Missense_Mutation p.E1609K 0.13 unknown(0) TCGA-DK-A3IT-01 8 145533476 145533476 G A HSF1 Missense_Mutation p.E128K 0.10 deleterious(0) benign(0.137) TCGA-DK-A3IT-01 8 21767094 21767094 G C DOK2 Missense_Mutation p.Q323E 0.38 tolerated(0.6) benign(0.004) TCGA-DK-A3IT-01 8 22570973 22570973 C G PEBP4 Missense_Mutation p.Q198H 0.28 deleterious(0) possibly_damaging(0.885) TCGA-DK-A3IT-01 8 26505143 26505143 C G DPYSL2 Intron 0.38 TCGA-DK-A3IT-01 8 41655100 41655100 G C ANK1 Intron 0.12 TCGA-DK-A3IT-01 9 130269539 130269539 G A FAM129B Missense_Mutation p.S609L 0.52 deleterious(0.02) benign(0.017) TCGA-DK-A3IT-01 9 131028091 131028091 G A GOLGA2 Nonsense_Mutation p.Q241* 0.30 TCGA-DK-A3IT-01 9 138650273 138650273 G A KCNT1 Missense_Mutation p.R258H 0.18 deleterious(0) benign(0.256) TCGA-DK-A3IT-01 9 139326391 139326391 G A INPP5E Silent p.F478F 0.44 TCGA-DK-A3IT-01 9 140051206 140051206 G A GRIN1 Missense_Mutation p.E274K 0.60 tolerated(0.12) benign(0.408) TCGA-DK-A3IT-01 9 140051368 140051368 G A GRIN1 Missense_Mutation p.D304N 0.70 deleterious(0.02) possibly_damaging(0.865) TCGA-DK-A3IT-01 9 140446562 140446562 G A MRPL41 Missense_Mutation p.C10Y 0.44 tolerated(0.19) benign(0.127) TCGA-DK-A3IT-01 9 140729270 140729270 C T EHMT1 Silent p.F1254F 0.46 TCGA-DK-A3IT-01 9 15623317 15623317 C G CCDC171 Missense_Mutation p.T243R 0.17 tolerated(0.73) benign(0.001) TCGA-DK-A3IT-01 9 19521029 19521029 C G SLC24A2 Missense_Mutation p.E533D 0.47 deleterious(0) probably_damaging(0.926) TCGA-DK-A3IT-01 9 6540106 6540106 G C GLDC Missense_Mutation p.F870L 0.16 tolerated(0.72) probably_damaging(0.986) TCGA-DK-A3IT-01 9 75540481 75540481 C G ALDH1A1 Silent p.L184L 0.44 TCGA-DK-A3IT-01 9 79318656 79318656 C T PRUNE2 Missense_Mutation p.E2625K 0.21 deleterious(0.03) possibly_damaging(0.848) TCGA-DK-A3IT-01 9 91617099 91617099 C T S1PR3 Silent p.I328I 0.39 TCGA-DK-A3IT-01 X 101098126 101098126 C T NXF5 5'UTR 0.34 TCGA-DK-A3IT-01 X 109695851 109695851 C T RGAG1 Missense_Mutation p.S669L 0.29 tolerated(0.17) benign(0) TCGA-DK-A3IT-01 X 119402108 119402108 A G TMEM255A Silent p.Y294Y 0.63 TCGA-DK-A3IT-01 X 12938248 12938248 C G TLR8 Missense_Mutation p.F363L 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IT-01 X 12938564 12938564 C G TLR8 Missense_Mutation p.H469D 0.38 tolerated(0.22) benign(0.025) TCGA-DK-A3IT-01 X 151996453 151996453 G A CETN2 Nonsense_Mutation p.R151* 0.22 TCGA-DK-A3IT-01 X 152014895 152014895 G A NSDHL Missense_Mutation p.M9I 0.49 tolerated_low_confidence(0.3) benign(0.001) TCGA-DK-A3IT-01 X 153229678 153229678 G C HCFC1 Missense_Mutation p.P134A 0.58 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IT-01 X 15371214 15371214 C T FIGF Missense_Mutation p.E240K 0.30 deleterious(0.03) benign(0.354) TCGA-DK-A3IT-01 X 19973576 19973576 C G CXorf23 Missense_Mutation p.Q461H 0.30 deleterious(0.01) benign(0.381) TCGA-DK-A3IT-01 X 30269617 30269617 C G MAGEB1 Missense_Mutation p.S336C 0.60 deleterious(0) unknown(0) TCGA-DK-A3IT-01 X 48925163 48925163 G T CCDC120 Nonsense_Mutation p.E470* 0.44 TCGA-DK-A3IT-01 X 49040229 49040229 C A PRICKLE3 Silent p.S90S 0.75 TCGA-DK-A3IT-01 X 49040246 49040246 C G PRICKLE3 Missense_Mutation p.D85H 0.71 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IT-01 X 7268167 7268167 G C STS Missense_Mutation p.Q539H 0.60 tolerated(0.06) benign(0) TCGA-DK-A3IT-01 Y 14898191 14898191 G T USP9Y Missense_Mutation p.G1069V 0.22 tolerated(0.06) possibly_damaging(0.735) TCGA-DK-A3IU-01 10 104111130 104111130 A T GBF1 Missense_Mutation p.Q138L 0.14 tolerated(0.06) benign(0.188) TCGA-DK-A3IU-01 10 104136749 104136749 G C GBF1 Missense_Mutation p.R1448P 0.11 deleterious(0.03) possibly_damaging(0.905) TCGA-DK-A3IU-01 10 104678597 104678597 C T CNNM2 Silent p.F120F 0.13 TCGA-DK-A3IU-01 10 106139900 106139900 G A CCDC147 Silent p.Q429Q 0.20 TCGA-DK-A3IU-01 10 114190585 114190585 C T ZDHHC6 Missense_Mutation p.E407K 0.07 tolerated(0.11) benign(0.003) TCGA-DK-A3IU-01 10 117026389 117026389 G A ATRNL1 Missense_Mutation p.G630R 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-DK-A3IU-01 10 121286922 121286922 C G RGS10 Missense_Mutation p.D22H 0.13 deleterious(0.02) possibly_damaging(0.693) TCGA-DK-A3IU-01 10 124671218 124671218 C T FAM24A Missense_Mutation p.A23V 0.15 tolerated(1) benign(0.019) TCGA-DK-A3IU-01 10 133978214 133978214 G C JAKMIP3 Missense_Mutation p.R820T 0.09 deleterious(0) probably_damaging(0.976) TCGA-DK-A3IU-01 10 134981812 134981812 T C KNDC1 Missense_Mutation p.F119S 0.13 deleterious(0) possibly_damaging(0.86) TCGA-DK-A3IU-01 10 135197564 135197564 C T PAOX Silent p.I323I 0.06 TCGA-DK-A3IU-01 10 15151130 15151130 G A NMT2 3'UTR 0.05 TCGA-DK-A3IU-01 10 15296770 15296770 G A FAM171A1 Missense_Mutation p.S176L 0.12 tolerated(0.63) benign(0.006) TCGA-DK-A3IU-01 10 17107611 17107611 G A CUBN Missense_Mutation p.S1012F 0.11 deleterious(0.05) possibly_damaging(0.631) TCGA-DK-A3IU-01 10 30336610 30336610 C T KIAA1462 Silent p.Q44Q 0.13 TCGA-DK-A3IU-01 10 34671692 34671692 C T PARD3 Missense_Mutation p.R392K 0.11 tolerated(1) benign(0.002) TCGA-DK-A3IU-01 10 35464537 35464537 C T CREM Intron 0.16 TCGA-DK-A3IU-01 10 3823941 3823941 C T KLF6 Missense_Mutation p.D190N 0.17 deleterious(0.05) possibly_damaging(0.868) TCGA-DK-A3IU-01 10 3824047 3824047 C G KLF6 Silent p.L154L 0.15 TCGA-DK-A3IU-01 10 51584877 51584877 G C NCOA4 Missense_Mutation p.E342Q 0.07 tolerated(0.06) possibly_damaging(0.864) TCGA-DK-A3IU-01 10 51768484 51768484 A G AGAP6 Missense_Mutation p.H200R 0.23 deleterious(0.02) benign(0.285) TCGA-DK-A3IU-01 10 5682651 5682651 G A ASB13 3'UTR 0.22 TCGA-DK-A3IU-01 10 5791660 5791660 C G FAM208B Silent p.L2092L 0.09 TCGA-DK-A3IU-01 10 94733956 94733956 G A EXOC6 Silent p.L640L 0.09 TCGA-DK-A3IU-01 10 97096846 97096846 G A SORBS1 Missense_Mutation p.S1024L 0.28 tolerated_low_confidence(0.29) benign(0.001) TCGA-DK-A3IU-01 10 97174257 97174257 C T SORBS1 Silent p.S268S 0.13 TCGA-DK-A3IU-01 11 110451669 110451669 C T ARHGAP20 Silent p.K667K 0.09 TCGA-DK-A3IU-01 11 111367977 111367977 G A BTG4 Missense_Mutation p.R157C 0.04 deleterious(0.03) possibly_damaging(0.556) TCGA-DK-A3IU-01 11 113650727 113650727 C G CLDN25 Missense_Mutation p.F70L 0.08 tolerated(0.1) benign(0.075) TCGA-DK-A3IU-01 11 117066606 117066606 C A SIDT2 Missense_Mutation p.S804Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 11 119228516 119228516 C A USP2 Silent p.R484R 0.09 TCGA-DK-A3IU-01 11 120298895 120298895 C G ARHGEF12 Missense_Mutation p.S175C 0.10 deleterious(0.05) possibly_damaging(0.765) TCGA-DK-A3IU-01 11 122647792 122647792 C T UBASH3B Silent p.L92L 0.10 TCGA-DK-A3IU-01 11 123988153 123988153 G C VWA5A Intron 0.10 TCGA-DK-A3IU-01 11 128842276 128842276 C - ARHGAP32 Intron 0.19 TCGA-DK-A3IU-01 11 16071318 16071318 C T SOX6 Missense_Mutation p.G473E 0.08 deleterious(0.01) possibly_damaging(0.885) TCGA-DK-A3IU-01 11 17428510 17428510 G T ABCC8 Silent p.I1029I 0.06 TCGA-DK-A3IU-01 11 27679688 27679688 C G BDNF Missense_Mutation p.D224H 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 11 46389235 46389235 G C DGKZ Missense_Mutation p.E291Q 0.15 deleterious(0.03) probably_damaging(0.943) TCGA-DK-A3IU-01 11 46394037 46394037 G A DGKZ Silent p.L517L 0.08 TCGA-DK-A3IU-01 11 55432656 55432656 A G OR4C6 Missense_Mutation p.N5S 0.13 tolerated_low_confidence(0.22) benign(0.035) TCGA-DK-A3IU-01 11 55872685 55872685 T G OR8H2 Missense_Mutation p.L56R 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 11 57947223 57947223 C T OR9Q1 Silent p.L103L 0.10 TCGA-DK-A3IU-01 11 59132579 59132579 G C OR5AN1 Missense_Mutation p.M216I 0.07 tolerated(0.16) benign(0.031) TCGA-DK-A3IU-01 11 61034991 61034991 G C VWCE Missense_Mutation p.F636L 0.09 deleterious(0.03) probably_damaging(0.977) TCGA-DK-A3IU-01 11 62444099 62444099 G A UBXN1 3'UTR 0.33 TCGA-DK-A3IU-01 11 64435996 64435996 G C NRXN2 Missense_Mutation p.F426L 0.07 tolerated(0.25) benign(0) TCGA-DK-A3IU-01 11 68369379 68369379 C T PPP6R3 Silent p.S747S 0.10 TCGA-DK-A3IU-01 11 68377463 68377463 A C PPP6R3 Silent p.R854R 0.14 TCGA-DK-A3IU-01 11 70202353 70202353 C T PPFIA1 Nonsense_Mutation p.Q859* 0.05 TCGA-DK-A3IU-01 11 71166203 71166203 G C NADSYN1 Missense_Mutation p.E45Q 0.09 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IU-01 11 82877138 82877138 G C PCF11 Missense_Mutation p.R400T 0.14 deleterious(0) probably_damaging(0.933) TCGA-DK-A3IU-01 11 89177304 89177304 T A NOX4 Missense_Mutation p.E149V 0.08 deleterious(0.01) possibly_damaging(0.833) TCGA-DK-A3IU-01 11 89223638 89223638 G C NOX4 Missense_Mutation p.H47Q 0.10 deleterious(0.02) benign(0.285) TCGA-DK-A3IU-01 12 102547708 102547708 C G PARPBP Missense_Mutation p.S150C 0.13 tolerated(0.21) benign(0.002) TCGA-DK-A3IU-01 12 104182660 104182660 A T NT5DC3 Missense_Mutation p.W353R 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A3IU-01 12 105238268 105238268 T C SLC41A2 Silent p.L506L 0.12 TCGA-DK-A3IU-01 12 120510439 120510439 C T CCDC64 Missense_Mutation p.S405L 0.11 tolerated(0.19) benign(0.323) TCGA-DK-A3IU-01 12 123380553 123380553 G C VPS37B Missense_Mutation p.N19K 0.07 tolerated(0.3) benign(0.107) TCGA-DK-A3IU-01 12 131487836 131487836 C A GPR133 Missense_Mutation p.S378Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 12 133433091 133433091 C A CHFR Nonsense_Mutation p.E410* 0.21 TCGA-DK-A3IU-01 12 133433092 133433092 C A CHFR Silent p.L409L 0.21 TCGA-DK-A3IU-01 12 21624538 21624538 G A RECQL Silent p.I497I 0.05 TCGA-DK-A3IU-01 12 21995253 21995253 G A ABCC9 Silent p.A1156A 0.29 TCGA-DK-A3IU-01 12 22627716 22627716 G C C2CD5 Nonsense_Mutation p.S671* 0.08 TCGA-DK-A3IU-01 12 275008 275008 A G IQSEC3 Missense_Mutation p.K975E 0.23 deleterious(0) possibly_damaging(0.899) TCGA-DK-A3IU-01 12 29736357 29736357 T A TMTC1 Silent p.S467S 0.07 TCGA-DK-A3IU-01 12 32974300 32974300 C T PKP2 Missense_Mutation p.G712E 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 12 48361983 48361983 G T TMEM106C Missense_Mutation p.D242Y 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 12 49177157 49177157 C T ADCY6 Missense_Mutation p.E21K 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DK-A3IU-01 12 49444684 49444684 G A KMT2D Nonsense_Mutation p.Q928* 0.14 TCGA-DK-A3IU-01 12 50264212 50264212 C T FAIM2 3'UTR 0.13 TCGA-DK-A3IU-01 12 51512521 51512521 C T TFCP2 Missense_Mutation p.E53K 0.04 deleterious(0.04) benign(0.057) TCGA-DK-A3IU-01 12 53647579 53647579 C T MFSD5 Silent p.L427L 0.08 TCGA-DK-A3IU-01 12 54447857 54447857 G A HOXC4 Missense_Mutation p.E51K 0.06 tolerated(0.59) benign(0.018) TCGA-DK-A3IU-01 12 55820661 55820661 G C OR6C76 Missense_Mutation p.L208F 0.16 deleterious_low_confidence(0.01) benign(0.247) TCGA-DK-A3IU-01 12 56215782 56215782 C G DNAJC14 Silent p.V696V 0.10 TCGA-DK-A3IU-01 12 56822054 56822054 C T TIMELESS Missense_Mutation p.R515Q 0.20 tolerated(0.1) possibly_damaging(0.474) TCGA-DK-A3IU-01 12 56822689 56822689 C T TIMELESS Missense_Mutation p.E428K 0.24 tolerated(0.12) benign(0.41) TCGA-DK-A3IU-01 12 6458367 6458367 G A SCNN1A Missense_Mutation p.S546F 0.08 deleterious(0.01) possibly_damaging(0.859) TCGA-DK-A3IU-01 12 7044738 7044738 C G ATN1 Missense_Mutation p.S103C 0.21 probably_damaging(0.998) TCGA-DK-A3IU-01 12 72022749 72022749 C G ZFC3H1 Missense_Mutation p.D1299H 0.06 tolerated(0.17) benign(0.372) TCGA-DK-A3IU-01 12 72057344 72057344 G A ZFC3H1 Missense_Mutation p.P16L 0.07 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-DK-A3IU-01 12 83455601 83455601 G A TMTC2 Silent p.L774L 0.08 TCGA-DK-A3IU-01 12 88570051 88570051 G C TMTC3 Missense_Mutation p.E463Q 0.10 tolerated(0.3) benign(0.135) TCGA-DK-A3IU-01 12 9317766 9317766 G A PZP Missense_Mutation p.T819M 0.08 deleterious(0) probably_damaging(0.95) TCGA-DK-A3IU-01 12 93792607 93792607 G C NUDT4 Missense_Mutation p.D107H 0.09 deleterious(0.02) benign(0.026) TCGA-DK-A3IU-01 12 94975783 94975783 T C TMCC3 Missense_Mutation p.R204G 0.13 deleterious(0) possibly_damaging(0.7) TCGA-DK-A3IU-01 12 96389601 96389601 C T HAL Missense_Mutation p.E30K 0.16 tolerated_low_confidence(0.1) benign(0.134) TCGA-DK-A3IU-01 12 97345758 97345758 C G NEDD1 Nonsense_Mutation p.S644* 0.08 TCGA-DK-A3IU-01 12 99640173 99640173 G C ANKS1B Silent p.L742L 0.18 TCGA-DK-A3IU-01 13 102029397 102029397 A C NALCN Missense_Mutation p.I129S 0.05 deleterious(0.01) probably_damaging(0.926) TCGA-DK-A3IU-01 13 109661365 109661365 A G MYO16 Missense_Mutation p.N833D 0.07 tolerated(0.07) benign(0.261) TCGA-DK-A3IU-01 13 114154315 114154315 G A TMCO3 Missense_Mutation p.E223K 0.05 deleterious(0.03) benign(0.044) TCGA-DK-A3IU-01 13 25419163 25419163 A - RNF17 Frame_Shift_Del p.N1017Ifs*2 0.13 TCGA-DK-A3IU-01 13 25473722 25473722 C A CENPJ Missense_Mutation p.R942S 0.19 deleterious(0) probably_damaging(0.947) TCGA-DK-A3IU-01 13 26828880 26828880 C T CDK8 Silent p.H34H 0.19 TCGA-DK-A3IU-01 13 32826017 32826017 G A FRY Silent p.K2391K 0.08 TCGA-DK-A3IU-01 13 60545102 60545102 G T DIAPH3 Missense_Mutation p.P615T 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IU-01 13 73636090 73636090 C T KLF5 Missense_Mutation p.S118L 0.06 deleterious(0.05) possibly_damaging(0.879) TCGA-DK-A3IU-01 13 76335156 76335156 C G LMO7 5'UTR 0.30 TCGA-DK-A3IU-01 14 100795964 100795964 C T SLC25A47 Silent p.A303A 0.17 TCGA-DK-A3IU-01 14 101402840 101402840 G A SNORD113-4 RNA 0.08 TCGA-DK-A3IU-01 14 102516520 102516520 G C DYNC1H1 Missense_Mutation p.E4599D 0.06 benign(0.004) TCGA-DK-A3IU-01 14 21897300 21897300 C T CHD8 Silent p.Q346Q 0.09 TCGA-DK-A3IU-01 14 23306101 23306101 C T MMP14 Silent p.L25L 0.08 TCGA-DK-A3IU-01 14 24546495 24546495 G T CPNE6 Missense_Mutation p.D478Y 0.09 deleterious(0.02) probably_damaging(0.96) TCGA-DK-A3IU-01 14 24617902 24617902 G A RNF31 Missense_Mutation p.E183K 0.07 tolerated(0.47) benign(0.075) TCGA-DK-A3IU-01 14 31575931 31575931 C T HECTD1 Missense_Mutation p.E2383K 0.13 tolerated(0.1) probably_damaging(0.982) TCGA-DK-A3IU-01 14 31598386 31598386 G A HECTD1 Silent p.I1397I 0.06 TCGA-DK-A3IU-01 14 50671004 50671004 C G SOS2 Missense_Mutation p.E71Q 0.09 deleterious(0.01) benign(0.39) TCGA-DK-A3IU-01 14 63888788 63888788 G A PPP2R5E Missense_Mutation p.L127F 0.10 deleterious(0) possibly_damaging(0.836) TCGA-DK-A3IU-01 14 64457211 64457211 C G SYNE2 Nonsense_Mutation p.S799* 0.07 TCGA-DK-A3IU-01 14 65220341 65220341 C T SPTB Silent p.P2172P 0.08 TCGA-DK-A3IU-01 14 66208977 66208977 G C FUT8 Missense_Mutation p.G526A 0.09 deleterious(0) possibly_damaging(0.886) TCGA-DK-A3IU-01 14 71137851 71137851 G A TTC9 Silent p.Q216Q 0.14 TCGA-DK-A3IU-01 14 76368482 76368482 C T TTLL5 Intron 0.07 TCGA-DK-A3IU-01 14 79270147 79270147 C G NRXN3 Silent p.V370V 0.10 TCGA-DK-A3IU-01 14 81609311 81609311 G C TSHR Missense_Mutation p.E303D 0.06 tolerated(0.62) benign(0.005) TCGA-DK-A3IU-01 14 81744768 81744768 G A STON2 Missense_Mutation p.S296F 0.06 tolerated_low_confidence(0.11) possibly_damaging(0.784) TCGA-DK-A3IU-01 14 94780794 94780794 G A SERPINA6 Silent p.F64F 0.13 TCGA-DK-A3IU-01 14 95080900 95080900 G A SERPINA3 Missense_Mutation p.R41Q 0.09 tolerated(0.41) benign(0.006) TCGA-DK-A3IU-01 14 96912869 96912869 C T AK7 Silent p.V265V 0.07 TCGA-DK-A3IU-01 15 22929848 22929848 G A CYFIP1 Silent p.L174L 0.11 TCGA-DK-A3IU-01 15 25601128 25601128 T C UBE3A Missense_Mutation p.I682V 0.04 tolerated(0.19) benign(0.119) TCGA-DK-A3IU-01 15 34015011 34015011 G A RYR3 Missense_Mutation p.G2239R 0.15 probably_damaging(1) TCGA-DK-A3IU-01 15 40586548 40586548 G A PLCB2 Silent p.F660F 0.25 TCGA-DK-A3IU-01 15 41313219 41313219 C T INO80 Silent p.L1051L 0.16 TCGA-DK-A3IU-01 15 42134022 42134022 G A PLA2G4B Missense_Mutation p.E397K 0.18 tolerated(0.62) benign(0.002) TCGA-DK-A3IU-01 15 44028455 44028455 C T RNU6-354P 5'Flank 0.13 TCGA-DK-A3IU-01 15 59179635 59179635 C T SLTM Missense_Mutation p.R827K 0.19 deleterious(0.02) probably_damaging(0.928) TCGA-DK-A3IU-01 15 63449670 63449670 G A RPS27L 5'UTR 0.17 TCGA-DK-A3IU-01 15 69003924 69003924 T C CORO2B Missense_Mutation p.I176T 0.12 deleterious(0.04) probably_damaging(0.987) TCGA-DK-A3IU-01 15 72455648 72455648 C T GRAMD2 Silent p.L305L 0.10 TCGA-DK-A3IU-01 15 75968309 75968309 G A CSPG4 Missense_Mutation p.T2184M 0.18 deleterious(0.03) possibly_damaging(0.628) TCGA-DK-A3IU-01 15 81552159 81552159 C A IL16 Missense_Mutation p.A120E 0.16 tolerated(0.1) benign(0.021) TCGA-DK-A3IU-01 16 1035195 1035195 G A SOX8 Missense_Mutation p.G384S 0.24 tolerated(0.69) benign(0) TCGA-DK-A3IU-01 16 11145497 11145497 G T CLEC16A Missense_Mutation p.R665L 0.18 deleterious(0) benign(0.357) TCGA-DK-A3IU-01 16 1374763 1374763 G A UBE2I Missense_Mutation p.R149Q 0.11 deleterious(0.04) benign(0.044) TCGA-DK-A3IU-01 16 15706612 15706612 C G KIAA0430 Missense_Mutation p.K1092N 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A3IU-01 16 15813524 15813524 G A MYH11 Missense_Mutation p.S1674F 0.09 possibly_damaging(0.748) TCGA-DK-A3IU-01 16 2155953 2155953 G A PKD1 Silent p.T2592T 0.09 TCGA-DK-A3IU-01 16 23768929 23768929 C G CHP2 3'UTR 0.11 TCGA-DK-A3IU-01 16 30002499 30002499 G A TAOK2 3'Flank 0.10 TCGA-DK-A3IU-01 16 31201394 31201394 C A FUS Nonsense_Mutation p.S367* 0.14 TCGA-DK-A3IU-01 16 56388944 56388944 C G RP11-441F2.5 5'Flank 0.09 TCGA-DK-A3IU-01 16 58576138 58576138 C T CNOT1 Silent p.L1559L 0.13 TCGA-DK-A3IU-01 16 67265134 67265134 G C FHOD1 Missense_Mutation p.S875C 0.12 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IU-01 16 67575769 67575769 G C FAM65A Splice_Site p.X381_splice 0.06 TCGA-DK-A3IU-01 16 68160443 68160443 G A NFATC3 Missense_Mutation p.R444Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 16 89775292 89775292 C A VPS9D1 Missense_Mutation p.G557V 0.20 deleterious(0.01) benign(0.326) TCGA-DK-A3IU-01 17 10440759 10440759 G C MYH2 Missense_Mutation p.S563C 0.07 deleterious(0.02) benign(0.033) TCGA-DK-A3IU-01 17 11522879 11522879 C G DNAH9 Silent p.L377L 0.06 TCGA-DK-A3IU-01 17 15234758 15234758 G A TEKT3 Missense_Mutation p.P49S 0.11 tolerated(0.25) benign(0.266) TCGA-DK-A3IU-01 17 26958554 26958554 G A KIAA0100 Silent p.H1414H 0.07 TCGA-DK-A3IU-01 17 28296147 28296147 A T EFCAB5 Nonsense_Mutation p.K177* 0.08 TCGA-DK-A3IU-01 17 30348952 30348952 G C LRRC37B Missense_Mutation p.E263Q 0.08 deleterious(0.03) probably_damaging(0.993) TCGA-DK-A3IU-01 17 32964905 32964905 C T TMEM132E Missense_Mutation p.T870I 0.21 tolerated(0.4) benign(0.146) TCGA-DK-A3IU-01 17 33591520 33591520 G C SLFN5 Missense_Mutation p.G486A 0.11 deleterious(0.01) possibly_damaging(0.612) TCGA-DK-A3IU-01 17 34956406 34956406 C T DHRS11 Silent p.L227L 0.14 TCGA-DK-A3IU-01 17 36877001 36877001 G A MLLT6 Splice_Site p.X814_splice 0.11 TCGA-DK-A3IU-01 17 38250311 38250311 C T NR1D1 Missense_Mutation p.R500H 0.09 deleterious(0.01) probably_damaging(0.946) TCGA-DK-A3IU-01 17 46606964 46606964 G A HOXB1 Missense_Mutation p.S284L 0.10 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IU-01 17 46607120 46607120 C T HOXB1 Missense_Mutation p.R232Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 17 4859247 4859247 C T ENO3 Silent p.I292I 0.11 TCGA-DK-A3IU-01 17 48701395 48701395 C T CACNA1G Missense_Mutation p.P2063L 0.14 deleterious(0.02) benign(0.01) TCGA-DK-A3IU-01 17 57289713 57289713 G C SMG8 Missense_Mutation p.E591Q 0.04 tolerated(0.2) benign(0.023) TCGA-DK-A3IU-01 17 58422944 58422944 C T USP32 Silent p.L28L 0.04 TCGA-DK-A3IU-01 17 61568636 61568636 G T ACE Missense_Mutation p.V936L 0.11 deleterious(0.05) benign(0.024) TCGA-DK-A3IU-01 17 61768566 61768566 G C MAP3K3 Silent p.L470L 0.04 TCGA-DK-A3IU-01 17 62782704 62782704 C T hsa-mir-6080 5'Flank 0.11 TCGA-DK-A3IU-01 17 65197255 65197255 G C HELZ Nonsense_Mutation p.S140* 0.07 TCGA-DK-A3IU-01 17 71027826 71027826 G A SLC39A11 Missense_Mutation p.L59F 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 17 72285872 72285872 C T DNAI2 Silent p.L203L 0.15 TCGA-DK-A3IU-01 17 73124975 73124975 C T ARMC7 Missense_Mutation p.R147C 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 17 74073116 74073116 C T GALR2 Silent p.I256I 0.08 TCGA-DK-A3IU-01 17 74073117 74073117 C T GALR2 Missense_Mutation p.L257F 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 17 74075517 74075517 C G ZACN Intron 0.11 TCGA-DK-A3IU-01 17 74075572 74075572 C G ZACN Missense_Mutation p.I50M 0.13 tolerated(0.1) benign(0.033) TCGA-DK-A3IU-01 17 74477496 74477496 C G RHBDF2 Missense_Mutation p.E37D 0.08 tolerated_low_confidence(0.41) benign(0.011) TCGA-DK-A3IU-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.33 deleterious(0) probably_damaging(0.985) TCGA-DK-A3IU-01 17 77768460 77768460 G A CBX8 Nonsense_Mutation p.Q382* 0.06 TCGA-DK-A3IU-01 17 79096605 79096605 G A AATK Silent p.F377F 0.29 TCGA-DK-A3IU-01 18 12673397 12673397 G A CEP76 Silent p.I649I 0.14 TCGA-DK-A3IU-01 18 14850274 14850274 A T ANKRD30B Nonsense_Mutation p.R1034* 0.25 TCGA-DK-A3IU-01 18 31326595 31326595 C T ASXL3 3'UTR 0.08 TCGA-DK-A3IU-01 18 3879141 3879141 G A DLGAP1 Nonsense_Mutation p.Q310* 0.09 TCGA-DK-A3IU-01 18 54348569 54348569 G A WDR7 Missense_Mutation p.D98N 0.09 deleterious(0.04) probably_damaging(0.974) TCGA-DK-A3IU-01 18 72999153 72999153 G A TSHZ1 Silent p.Q552Q 0.09 TCGA-DK-A3IU-01 19 10369342 10369342 C T MRPL4 Silent p.F240F 0.06 TCGA-DK-A3IU-01 19 11323951 11323951 C T DOCK6 Silent p.L1464L 0.15 TCGA-DK-A3IU-01 19 12985238 12985238 C T MAST1 Missense_Mutation p.R1423C 0.17 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-DK-A3IU-01 19 16908608 16908608 G A NWD1 Missense_Mutation p.D1124N 0.09 deleterious(0.01) possibly_damaging(0.835) TCGA-DK-A3IU-01 19 18466806 18466806 G C PGPEP1 Missense_Mutation p.E63D 0.05 deleterious(0.05) benign(0.043) TCGA-DK-A3IU-01 19 18700373 18700373 C T C19orf60 Silent p.F111F 0.30 TCGA-DK-A3IU-01 19 18700384 18700384 C T C19orf60 Missense_Mutation p.S115L 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 19 19655890 19655890 C T CILP2 Missense_Mutation p.R846W 0.10 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 19 1993151 1993151 C G BTBD2 Missense_Mutation p.Q184H 0.13 tolerated(0.13) benign(0.03) TCGA-DK-A3IU-01 19 20828213 20828213 G A ZNF626 Intron 0.07 TCGA-DK-A3IU-01 19 22156369 22156369 T C ZNF208 Silent p.A489A 0.18 TCGA-DK-A3IU-01 19 22952087 22952087 G C ZNF99 Missense_Mutation p.L15V 0.09 tolerated(0.52) probably_damaging(0.979) TCGA-DK-A3IU-01 19 33444672 33444672 G A CEP89 Missense_Mutation p.S114F 0.12 tolerated(0.1) probably_damaging(0.974) TCGA-DK-A3IU-01 19 35940649 35940649 C T FFAR2 Silent p.L11L 0.06 TCGA-DK-A3IU-01 19 36223466 36223466 G C KMT2B Missense_Mutation p.E2006Q 0.15 probably_damaging(0.932) TCGA-DK-A3IU-01 19 37441804 37441804 G A ZNF568 Silent p.E583E 0.06 TCGA-DK-A3IU-01 19 39880314 39880314 G A PAF1 Silent p.L86L 0.06 TCGA-DK-A3IU-01 19 41281508 41281508 G A MIA Missense_Mutation p.G21S 0.04 tolerated(1) benign(0) TCGA-DK-A3IU-01 19 42392170 42392170 G C ARHGEF1 Missense_Mutation p.R21P 0.12 tolerated(0.13) benign(0.004) TCGA-DK-A3IU-01 19 42474362 42474362 G C ATP1A3 Silent p.L852L 0.09 TCGA-DK-A3IU-01 19 42728808 42728808 G A ZNF526 Missense_Mutation p.E85K 0.12 tolerated(0.07) benign(0.115) TCGA-DK-A3IU-01 19 4428819 4428819 C G CHAF1A Silent p.L512L 0.15 TCGA-DK-A3IU-01 19 44377405 44377405 G A ZNF404 Missense_Mutation p.H321Y 0.08 deleterious(0) probably_damaging(0.959) TCGA-DK-A3IU-01 19 44500376 44500376 C G ZNF155 Missense_Mutation p.Q134E 0.06 tolerated(0.09) benign(0.017) TCGA-DK-A3IU-01 19 44740988 44740988 G T ZNF227 3'UTR 0.28 TCGA-DK-A3IU-01 19 46387392 46387392 C T IRF2BP1 Silent p.P547P 0.11 TCGA-DK-A3IU-01 19 50243088 50243088 C A TSKS Missense_Mutation p.G575V 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A3IU-01 19 52909217 52909217 C A ZNF528 Missense_Mutation p.L25M 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 19 5455804 5455804 G A ZNRF4 Missense_Mutation p.R101Q 0.22 tolerated(0.32) benign(0.23) TCGA-DK-A3IU-01 19 55672075 55672075 C T DNAAF3 Silent p.A395A 0.10 TCGA-DK-A3IU-01 19 56466276 56466276 C G NLRP8 Silent p.L284L 0.12 TCGA-DK-A3IU-01 19 57328268 57328268 G A PEG3 Silent p.F514F 0.20 TCGA-DK-A3IU-01 19 57840469 57840469 G A ZNF543 Missense_Mutation p.G547S 0.07 tolerated(1) benign(0) TCGA-DK-A3IU-01 19 6270699 6270699 G A MLLT1 Silent p.F28F 0.09 TCGA-DK-A3IU-01 19 8171100 8171100 C G FBN3 Missense_Mutation p.E1569Q 0.10 deleterious(0) benign(0.446) TCGA-DK-A3IU-01 19 9025598 9025598 A G MUC16 Silent p.L12286L 0.13 TCGA-DK-A3IU-01 1 108417594 108417594 C T VAV3 Missense_Mutation p.E84K 0.12 deleterious(0.02) benign(0.016) TCGA-DK-A3IU-01 1 109366068 109366068 C T AKNAD1 Silent p.Q697Q 0.08 TCGA-DK-A3IU-01 1 113459918 113459918 G C SLC16A1 Silent p.L370L 0.05 TCGA-DK-A3IU-01 1 114226103 114226103 G A MAGI3 Missense_Mutation p.E1305K 0.06 tolerated_low_confidence(0.17) benign(0.006) TCGA-DK-A3IU-01 1 114380651 114380651 C T PTPN22 Silent p.Q457Q 0.08 TCGA-DK-A3IU-01 1 114380755 114380755 C G PTPN22 Missense_Mutation p.E423Q 0.08 tolerated(0.44) benign(0.014) TCGA-DK-A3IU-01 1 117504176 117504176 G C PTGFRN Missense_Mutation p.D509H 0.05 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 1 118039474 118039474 G A MAN1A2 Silent p.G458G 0.11 TCGA-DK-A3IU-01 1 119936422 119936422 G T HAO2 Missense_Mutation p.A339S 0.06 tolerated(0.73) benign(0.019) TCGA-DK-A3IU-01 1 12262060 12262060 G T TNFRSF1B Missense_Mutation p.G313C 0.12 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 1 1267276 1267276 C T TAS1R3 Silent p.A150A 0.22 TCGA-DK-A3IU-01 1 144871824 144871824 G A PDE4DIP Missense_Mutation p.S1713L 0.05 tolerated(0.11) possibly_damaging(0.557) TCGA-DK-A3IU-01 1 149399013 149399013 G T HIST2H3PS2 3'Flank 0.05 TCGA-DK-A3IU-01 1 150483939 150483939 G A ECM1 Missense_Mutation p.E266K 0.13 tolerated(0.19) benign(0.047) TCGA-DK-A3IU-01 1 152324512 152324512 T C FLG2 Missense_Mutation p.K1917R 0.06 benign(0.076) TCGA-DK-A3IU-01 1 153701122 153701122 G A INTS3 Silent p.Q4Q 0.10 TCGA-DK-A3IU-01 1 153701160 153701160 G T INTS3 Missense_Mutation p.G17V 0.18 deleterious_low_confidence(0.03) unknown(0) TCGA-DK-A3IU-01 1 153784519 153784519 C T GATAD2B Missense_Mutation p.M503I 0.06 tolerated(0.8) benign(0.001) TCGA-DK-A3IU-01 1 155018557 155018557 G C DCST1 Intron 0.10 TCGA-DK-A3IU-01 1 155695260 155695260 C G DAP3 Missense_Mutation p.P120A 0.14 deleterious(0) possibly_damaging(0.758) TCGA-DK-A3IU-01 1 156182917 156182917 C T PMF1 Silent p.L37L 0.09 TCGA-DK-A3IU-01 1 156618580 156618580 G C BCAN Missense_Mutation p.K330N 0.09 deleterious(0) probably_damaging(0.993) TCGA-DK-A3IU-01 1 158450115 158450115 C T OR10R2 Silent p.L150L 0.18 TCGA-DK-A3IU-01 1 158747170 158747170 G A OR6N2 Missense_Mutation p.L86F 0.05 deleterious(0.01) benign(0.047) TCGA-DK-A3IU-01 1 159035904 159035904 C G AIM2 Missense_Mutation p.K204N 0.10 deleterious(0.01) benign(0.187) TCGA-DK-A3IU-01 1 159284097 159284097 A G OR10J3 Missense_Mutation p.V118A 0.08 tolerated(0.86) benign(0.003) TCGA-DK-A3IU-01 1 162343919 162343919 G A C1orf111 Silent p.L235L 0.04 TCGA-DK-A3IU-01 1 162549315 162549315 C T UAP1 Nonsense_Mutation p.Q195* 0.11 TCGA-DK-A3IU-01 1 165380319 165380319 C T RXRG Missense_Mutation p.R217Q 0.24 deleterious(0.02) benign(0.248) TCGA-DK-A3IU-01 1 171080103 171080103 C T FMO3 Silent p.F264F 0.06 TCGA-DK-A3IU-01 1 17609588 17609588 C T PADI3 3'UTR 0.28 TCGA-DK-A3IU-01 1 179989421 179989421 A C CEP350 Silent p.R838R 0.13 TCGA-DK-A3IU-01 1 180155185 180155185 C T QSOX1 Intron 0.09 TCGA-DK-A3IU-01 1 185969231 185969231 G A HMCN1 Missense_Mutation p.R1310K 0.14 benign(0.007) TCGA-DK-A3IU-01 1 19454159 19454159 G A UBR4 Silent p.F3062F 0.08 TCGA-DK-A3IU-01 1 196697623 196697623 G C CFH Missense_Mutation p.G795A 0.07 deleterious(0) probably_damaging(0.945) TCGA-DK-A3IU-01 1 201383732 201383732 C T TNNI1 Missense_Mutation p.E35K 0.11 tolerated(0.56) benign(0.035) TCGA-DK-A3IU-01 1 21154159 21154159 C G EIF4G3 Missense_Mutation p.R1357T 0.05 deleterious(0.02) possibly_damaging(0.451) TCGA-DK-A3IU-01 1 212588144 212588144 C T TMEM206 5'UTR 0.12 TCGA-DK-A3IU-01 1 213405500 213405500 G C RPS6KC1 Missense_Mutation p.R376T 0.10 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IU-01 1 215768802 215768802 C G KCTD3 Missense_Mutation p.Q308E 0.08 deleterious(0) probably_damaging(0.977) TCGA-DK-A3IU-01 1 216500943 216500943 G T USH2A Missense_Mutation p.L280I 0.08 possibly_damaging(0.688) TCGA-DK-A3IU-01 1 231364906 231364906 T A C1orf131 Missense_Mutation p.N167I 0.07 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 1 235969823 235969823 G A LYST Silent p.L871L 0.11 TCGA-DK-A3IU-01 1 237819281 237819281 C G RYR2 Nonsense_Mutation p.S2709* 0.19 TCGA-DK-A3IU-01 1 241803278 241803278 G A OPN3 Silent p.F93F 0.16 TCGA-DK-A3IU-01 1 24418668 24418668 C T MYOM3 Missense_Mutation p.E410K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IU-01 1 248402892 248402892 T A OR2M4 Missense_Mutation p.V221D 0.12 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 1 248616329 248616329 C T OR2T2 Silent p.I77I 0.03 TCGA-DK-A3IU-01 1 27092815 27092815 C - ARID1A Frame_Shift_Del p.P947Hfs*21 0.12 TCGA-DK-A3IU-01 1 28384590 28384590 C T EYA3 5'UTR 0.13 TCGA-DK-A3IU-01 1 33764656 33764656 G C ZNF362 3'UTR 0.17 TCGA-DK-A3IU-01 1 44072610 44072610 C G PTPRF Silent p.L1276L 0.07 TCGA-DK-A3IU-01 1 44426671 44426671 G C IPO13 Missense_Mutation p.D745H 0.08 deleterious(0) possibly_damaging(0.67) TCGA-DK-A3IU-01 1 44442265 44442265 C T ATP6V0B Silent p.I94I 0.08 TCGA-DK-A3IU-01 1 6293642 6293642 G A ICMT Missense_Mutation p.P116S 0.07 deleterious(0.02) possibly_damaging(0.459) TCGA-DK-A3IU-01 1 70618118 70618118 G C LRRC40 Silent p.L479L 0.12 TCGA-DK-A3IU-01 1 90058633 90058633 C A LRRC8B 3'UTR 0.08 TCGA-DK-A3IU-01 1 92185617 92185617 C T TGFBR3 Missense_Mutation p.E416K 0.07 tolerated(0.88) benign(0.001) TCGA-DK-A3IU-01 20 10620148 10620148 A G JAG1 Nonstop_Mutation p.*1219Qext*10 0.09 TCGA-DK-A3IU-01 20 20022983 20022983 C T CRNKL1 Missense_Mutation p.E545K 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A3IU-01 20 33577919 33577919 C G MYH7B Missense_Mutation p.L666V 0.07 possibly_damaging(0.591) TCGA-DK-A3IU-01 20 36641489 36641489 T C TTI1 Missense_Mutation p.S244G 0.07 tolerated(1) benign(0) TCGA-DK-A3IU-01 20 36935966 36935966 C T BPI Intron 0.08 TCGA-DK-A3IU-01 20 46279914 46279914 C T NCOA3 Silent p.F1280F 0.06 TCGA-DK-A3IU-01 20 47605103 47605103 G A ARFGEF2 Missense_Mutation p.E813K 0.04 deleterious(0) possibly_damaging(0.518) TCGA-DK-A3IU-01 20 48124546 48124546 C G PTGIS Missense_Mutation p.E472Q 0.11 tolerated(0.32) benign(0.01) TCGA-DK-A3IU-01 20 50401158 50401158 C G SALL4 Missense_Mutation p.E936D 0.07 tolerated(0.47) probably_damaging(0.919) TCGA-DK-A3IU-01 20 60578285 60578285 G A TAF4 Missense_Mutation p.S806F 0.05 possibly_damaging(0.687) TCGA-DK-A3IU-01 20 62120317 62120317 C A EEF1A2 Silent p.P406P 0.12 TCGA-DK-A3IU-01 20 62500783 62500783 G C TPD52L2 Missense_Mutation p.E52Q 0.08 deleterious(0.01) probably_damaging(1) TCGA-DK-A3IU-01 20 62659889 62659889 A T PRPF6 Missense_Mutation p.M800L 0.08 tolerated(0.81) benign(0.016) TCGA-DK-A3IU-01 20 62896743 62896743 C T PCMTD2 Silent p.L181L 0.07 TCGA-DK-A3IU-01 20 8696958 8696958 G C PLCB1 Missense_Mutation p.G433A 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 21 10996123 10996123 C G TPTE RNA 0.05 TCGA-DK-A3IU-01 21 38537894 38537894 G A TTC3 Missense_Mutation p.M1126I 0.06 tolerated(1) benign(0.004) TCGA-DK-A3IU-01 21 45950980 45950980 C T TSPEAR Silent p.V193V 0.07 TCGA-DK-A3IU-01 21 46645491 46645491 C T ADARB1 3'UTR 0.15 TCGA-DK-A3IU-01 22 19118990 19118990 C A TSSK2 Silent p.V26V 0.11 TCGA-DK-A3IU-01 22 19422269 19422269 C T MRPL40 Missense_Mutation p.L50F 0.11 deleterious(0.02) benign(0.045) TCGA-DK-A3IU-01 22 25023891 25023891 C A GGT1 Silent p.P427P 0.06 TCGA-DK-A3IU-01 22 26286783 26286783 G A MYO18B Missense_Mutation p.V1459M 0.16 tolerated(0.09) possibly_damaging(0.511) TCGA-DK-A3IU-01 22 26860092 26860092 C T HPS4 Missense_Mutation p.A502T 0.16 tolerated(0.49) benign(0.004) TCGA-DK-A3IU-01 22 31822752 31822752 C G DRG1 Missense_Mutation p.L289V 0.11 deleterious(0) possibly_damaging(0.859) TCGA-DK-A3IU-01 22 36650941 36650941 C G APOL1 Intron 0.13 TCGA-DK-A3IU-01 22 37603237 37603237 C T SSTR3 Nonsense_Mutation p.W202* 0.14 TCGA-DK-A3IU-01 22 37771107 37771107 G A ELFN2 Silent p.I156I 0.06 TCGA-DK-A3IU-01 22 40139965 40139965 C T ENTHD1 Missense_Mutation p.E515K 0.09 tolerated(0.09) benign(0.218) TCGA-DK-A3IU-01 22 40814663 40814663 G A MKL1 Silent p.P593P 0.33 TCGA-DK-A3IU-01 22 41911842 41911842 A T ACO2 Silent p.A252A 0.10 TCGA-DK-A3IU-01 22 50318084 50318084 G A CRELD2 Silent p.R332R 0.20 TCGA-DK-A3IU-01 22 50898430 50898430 C G SBF1 Missense_Mutation p.E1148Q 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A3IU-01 2 101655103 101655103 C T TBC1D8 Silent p.E350E 0.10 TCGA-DK-A3IU-01 2 102968151 102968151 G A IL1RL1 Missense_Mutation p.E481K 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 2 113783751 113783751 T C IL36B Missense_Mutation p.H107R 0.12 deleterious_low_confidence(0) benign(0.192) TCGA-DK-A3IU-01 2 131520580 131520580 G C AMER3 Missense_Mutation p.S312T 0.16 deleterious(0.02) benign(0.307) TCGA-DK-A3IU-01 2 136610439 136610439 C T MCM6 Missense_Mutation p.R558K 0.12 tolerated(0.34) benign(0.021) TCGA-DK-A3IU-01 2 160604796 160604796 C G MARCH7 Nonsense_Mutation p.S332* 0.06 TCGA-DK-A3IU-01 2 160698844 160698844 G C LY75-CD302 Silent p.L1064L 0.13 TCGA-DK-A3IU-01 2 162813607 162813607 C T SLC4A10 Missense_Mutation p.H884Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-DK-A3IU-01 2 170681089 170681089 T C METTL5 Missense_Mutation p.K7E 0.11 deleterious(0) possibly_damaging(0.847) TCGA-DK-A3IU-01 2 173337614 173337614 C - ITGA6 Intron 0.15 TCGA-DK-A3IU-01 2 179611576 179611576 G C TTN Intron 0.05 TCGA-DK-A3IU-01 2 198948543 198948543 C T PLCL1 Missense_Mutation p.S101L 0.10 deleterious(0) benign(0.404) TCGA-DK-A3IU-01 2 201505863 201505863 G C AOX1 Missense_Mutation p.E871Q 0.05 tolerated(0.25) benign(0.014) TCGA-DK-A3IU-01 2 202073797 202073797 C T CASP10 Silent p.I309I 0.12 TCGA-DK-A3IU-01 2 219825385 219825385 C G CDK5R2 Silent p.L281L 0.04 TCGA-DK-A3IU-01 2 230450662 230450662 T C DNER Missense_Mutation p.I253M 0.11 deleterious(0.02) possibly_damaging(0.823) TCGA-DK-A3IU-01 2 231988456 231988456 G C HTR2B Missense_Mutation p.S8C 0.12 tolerated_low_confidence(0.05) benign(0.002) TCGA-DK-A3IU-01 2 234191385 234191385 G A ATG16L1 Missense_Mutation p.D397N 0.09 deleterious(0.01) benign(0.309) TCGA-DK-A3IU-01 2 24484496 24484496 G A ITSN2 Missense_Mutation p.A824V 0.10 tolerated(0.11) unknown(0) TCGA-DK-A3IU-01 2 27600473 27600473 G A ZNF513 Missense_Mutation p.S522F 0.09 deleterious_low_confidence(0.04) benign(0.018) TCGA-DK-A3IU-01 2 27728699 27728699 C T GCKR Nonsense_Mutation p.Q289* 0.07 TCGA-DK-A3IU-01 2 3628473 3628473 A G RPS7 3'UTR 0.10 TCGA-DK-A3IU-01 2 37374916 37374916 C G EIF2AK2 Missense_Mutation p.E12Q 0.11 tolerated(0.06) probably_damaging(0.972) TCGA-DK-A3IU-01 2 43968150 43968150 C G PLEKHH2 Silent p.L1063L 0.13 TCGA-DK-A3IU-01 2 55561583 55561583 C T CCDC88A Missense_Mutation p.E792K 0.07 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 2 69173523 69173523 C T GKN2 Missense_Mutation p.D129N 0.05 tolerated(0.85) benign(0.004) TCGA-DK-A3IU-01 2 70037783 70037783 G A ANXA4 Missense_Mutation p.R152Q 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-DK-A3IU-01 2 71043444 71043444 T A CLEC4F Missense_Mutation p.T357S 0.09 deleterious(0.04) benign(0.034) TCGA-DK-A3IU-01 2 97475114 97475114 C T CNNM4 Nonsense_Mutation p.Q730* 0.10 TCGA-DK-A3IU-01 3 100148547 100148547 G T LNP1 5'UTR 0.08 TCGA-DK-A3IU-01 3 108626914 108626914 G T GUCA1C Silent p.S195S 0.18 TCGA-DK-A3IU-01 3 111603863 111603863 C T PHLDB2 Silent p.P313P 0.17 TCGA-DK-A3IU-01 3 126208126 126208126 G A UROC1 Silent p.F627F 0.07 TCGA-DK-A3IU-01 3 129127548 129127548 G A EFCAB12 Nonsense_Mutation p.Q397* 0.27 TCGA-DK-A3IU-01 3 134085127 134085127 C G AMOTL2 Missense_Mutation p.R395T 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A3IU-01 3 134851765 134851765 G T EPHB1 Missense_Mutation p.V391F 0.15 deleterious(0) probably_damaging(0.981) TCGA-DK-A3IU-01 3 138724624 138724624 C T PRR23A Missense_Mutation p.E163K 0.17 tolerated(0.15) probably_damaging(0.913) TCGA-DK-A3IU-01 3 14166665 14166665 G A TMEM43 5'UTR 0.19 TCGA-DK-A3IU-01 3 14798893 14798893 G A C3orf20 Silent p.E652E 0.19 TCGA-DK-A3IU-01 3 148562481 148562481 G C CPB1 Missense_Mutation p.K235N 0.06 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 3 149245664 149245664 C T WWTR1 Missense_Mutation p.M288I 0.06 tolerated(0.4) benign(0) TCGA-DK-A3IU-01 3 150906195 150906195 C T MED12L Missense_Mutation p.L561F 0.08 tolerated(0.1) benign(0.021) TCGA-DK-A3IU-01 3 152880590 152880590 C T RAP2B Silent p.I36I 0.07 TCGA-DK-A3IU-01 3 164724636 164724636 G T SI Silent p.L1458L 0.08 TCGA-DK-A3IU-01 3 174951896 174951896 C T NAALADL2 Missense_Mutation p.H241Y 0.17 tolerated(1) benign(0.001) TCGA-DK-A3IU-01 3 178742989 178742989 C A ZMAT3 Missense_Mutation p.R229L 0.15 deleterious(0) probably_damaging(0.954) TCGA-DK-A3IU-01 3 179597763 179597763 C T PEX5L Silent p.Q153Q 0.12 TCGA-DK-A3IU-01 3 182987890 182987890 G A B3GNT5 Missense_Mutation p.D102N 0.06 tolerated(0.18) benign(0.004) TCGA-DK-A3IU-01 3 182988156 182988156 G C B3GNT5 Missense_Mutation p.M190I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IU-01 3 182988310 182988310 G A B3GNT5 Missense_Mutation p.E242K 0.05 tolerated(0.08) benign(0.392) TCGA-DK-A3IU-01 3 182988588 182988588 G C B3GNT5 Missense_Mutation p.K334N 0.11 tolerated(0.18) benign(0.07) TCGA-DK-A3IU-01 3 186331033 186331033 C T AHSG Missense_Mutation p.P35S 0.11 deleterious(0.01) possibly_damaging(0.593) TCGA-DK-A3IU-01 3 27436152 27436152 G A SLC4A7 Missense_Mutation p.H983Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 3 27763709 27763709 C T EOMES Missense_Mutation p.R26Q 0.29 tolerated_low_confidence(0.14) benign(0.025) TCGA-DK-A3IU-01 3 432754 432754 T C CHL1 Silent p.F901F 0.23 TCGA-DK-A3IU-01 3 44700638 44700638 G C ZNF35 Missense_Mutation p.Q261H 0.11 tolerated(0.09) probably_damaging(0.988) TCGA-DK-A3IU-01 3 46586552 46586552 G A LRRC2 Missense_Mutation p.S106F 0.09 tolerated(0.11) benign(0.006) TCGA-DK-A3IU-01 3 46712990 46712990 G A ALS2CL Silent p.L923L 0.06 TCGA-DK-A3IU-01 3 49716346 49716346 G A APEH Silent p.Q374Q 0.07 TCGA-DK-A3IU-01 3 50252990 50252990 G A SLC38A3 RNA 0.06 TCGA-DK-A3IU-01 3 50327428 50327428 G A IFRD2 Missense_Mutation p.H224Y 0.25 deleterious(0.03) possibly_damaging(0.53) TCGA-DK-A3IU-01 3 51664777 51664777 G A RAD54L2 Missense_Mutation p.E219K 0.12 tolerated(0.16) benign(0.11) TCGA-DK-A3IU-01 3 52282434 52282434 G C PPM1M Missense_Mutation p.Q81H 0.09 deleterious(0.04) benign(0.025) TCGA-DK-A3IU-01 3 52835027 52835027 C T ITIH3 Silent p.I416I 0.12 TCGA-DK-A3IU-01 3 62248572 62248572 G A PTPRG Intron 0.12 TCGA-DK-A3IU-01 3 98189002 98189002 C T OR5K1 Silent p.I194I 0.08 TCGA-DK-A3IU-01 4 100530103 100530103 C G MTTP Missense_Mutation p.Q580E 0.17 deleterious(0.01) benign(0.014) TCGA-DK-A3IU-01 4 110612078 110612078 C T CASP6 Missense_Mutation p.E191K 0.16 tolerated(0.08) benign(0.297) TCGA-DK-A3IU-01 4 110864425 110864425 G C EGF Missense_Mutation p.E115Q 0.09 tolerated(0.1) benign(0.175) TCGA-DK-A3IU-01 4 113524748 113524748 C T C4orf21 Missense_Mutation p.E970K 0.15 tolerated(0.07) benign(0.354) TCGA-DK-A3IU-01 4 126371442 126371442 C T FAT4 Nonsense_Mutation p.Q3091* 0.14 TCGA-DK-A3IU-01 4 128722376 128722376 G A HSPA4L Missense_Mutation p.M171I 0.18 tolerated(0.22) benign(0.012) TCGA-DK-A3IU-01 4 1347046 1347046 C T UVSSA Missense_Mutation p.S260F 0.14 tolerated(0.14) benign(0.003) TCGA-DK-A3IU-01 4 155157962 155157962 G T DCHS2 Silent p.V2159V 0.14 TCGA-DK-A3IU-01 4 169013724 169013724 G A ANXA10 5'UTR 0.38 TCGA-DK-A3IU-01 4 185340623 185340623 C T IRF2 Missense_Mutation p.G63R 0.23 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 4 186111383 186111383 G A KIAA1430 Missense_Mutation p.S323L 0.13 tolerated(0.65) unknown(0) TCGA-DK-A3IU-01 4 1957023 1957023 A C WHSC1 Missense_Mutation p.H825P 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A3IU-01 4 25849234 25849234 G A SEL1L3 Missense_Mutation p.H139Y 0.10 tolerated(0.18) benign(0.021) TCGA-DK-A3IU-01 4 36212143 36212143 C G ARAP2 Silent p.P452P 0.10 TCGA-DK-A3IU-01 4 38037247 38037247 G C TBC1D1 Missense_Mutation p.L447F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3IU-01 4 39254832 39254832 G C WDR19 Silent p.L932L 0.12 TCGA-DK-A3IU-01 4 46390673 46390673 G A GABRA2 Silent p.F17F 0.07 TCGA-DK-A3IU-01 4 46973161 46973161 C T GABRA4 Silent p.V271V 0.19 TCGA-DK-A3IU-01 4 66280023 66280023 C T EPHA5 Missense_Mutation p.E556K 0.12 deleterious(0.01) probably_damaging(0.952) TCGA-DK-A3IU-01 4 69188522 69188522 G A YTHDC1 Nonsense_Mutation p.Q516* 0.12 TCGA-DK-A3IU-01 4 71339777 71339777 G A MUC7 Silent p.L13L 0.11 TCGA-DK-A3IU-01 4 71347324 71347324 C T MUC7 Missense_Mutation p.S288F 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A3IU-01 4 72623791 72623791 C T GC Missense_Mutation p.E286K 0.14 tolerated(0.05) benign(0.035) TCGA-DK-A3IU-01 4 76523333 76523333 T A CDKL2 Missense_Mutation p.K316N 0.12 tolerated(0.09) benign(0.103) TCGA-DK-A3IU-01 4 76572312 76572312 C G G3BP2 Missense_Mutation p.D320H 0.10 deleterious(0) possibly_damaging(0.759) TCGA-DK-A3IU-01 4 77691979 77691979 C T SHROOM3 Silent p.S1850S 0.18 TCGA-DK-A3IU-01 4 85638082 85638082 G C WDFY3 Missense_Mutation p.I2614M 0.19 deleterious(0) probably_damaging(0.985) TCGA-DK-A3IU-01 5 1076861 1076861 C T SLC12A7 Missense_Mutation p.E566K 0.07 deleterious(0) possibly_damaging(0.499) TCGA-DK-A3IU-01 5 110440423 110440423 G A WDR36 Missense_Mutation p.E368K 0.07 tolerated(0.13) benign(0.065) TCGA-DK-A3IU-01 5 11098861 11098861 C A CTNND2 Splice_Site p.X822_splice 0.09 TCGA-DK-A3IU-01 5 112178932 112178932 G A APC Nonsense_Mutation p.W2547* 0.08 TCGA-DK-A3IU-01 5 127704904 127704904 G A FBN2 Missense_Mutation p.P740L 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 5 130825320 130825320 C A RAPGEF6 Nonsense_Mutation p.E587* 0.21 TCGA-DK-A3IU-01 5 132052130 132052130 G A KIF3A Missense_Mutation p.S254L 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 5 135692756 135692756 C A TRPC7 Missense_Mutation p.G107V 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IU-01 5 13735275 13735275 C T DNAH5 Missense_Mutation p.R3909Q 0.07 benign(0.238) TCGA-DK-A3IU-01 5 140475294 140475294 A G PCDHB2 Missense_Mutation p.Q307R 0.10 tolerated_low_confidence(0.36) benign(0.012) TCGA-DK-A3IU-01 5 140574096 140574096 G A PCDHB10 Silent p.T657T 0.11 TCGA-DK-A3IU-01 5 140719425 140719425 C T PCDHGA2 Missense_Mutation p.S296L 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.763) TCGA-DK-A3IU-01 5 140719466 140719466 G A PCDHGA2 Missense_Mutation p.E310K 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A3IU-01 5 140720046 140720046 C G PCDHGA2 Missense_Mutation p.S503C 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A3IU-01 5 141044642 141044642 G A ARAP3 Silent p.L883L 0.25 TCGA-DK-A3IU-01 5 14304625 14304625 C T TRIO Missense_Mutation p.S475L 0.05 benign(0.366) TCGA-DK-A3IU-01 5 149375650 149375650 C A TIGD6 Nonsense_Mutation p.E88* 0.11 TCGA-DK-A3IU-01 5 160047939 160047939 T C ATP10B Missense_Mutation p.S611G 0.09 tolerated(0.41) benign(0.102) TCGA-DK-A3IU-01 5 178555036 178555036 G T ADAMTS2 Missense_Mutation p.N847K 0.11 deleterious(0.01) possibly_damaging(0.644) TCGA-DK-A3IU-01 5 179675973 179675973 C T MAPK9 Missense_Mutation p.V206I 0.08 deleterious(0.01) probably_damaging(0.957) TCGA-DK-A3IU-01 5 180048704 180048704 G A FLT4 Silent p.L620L 0.15 TCGA-DK-A3IU-01 5 180475178 180475178 C T BTNL9 Missense_Mutation p.H121Y 0.13 tolerated(0.28) benign(0.017) TCGA-DK-A3IU-01 5 32712174 32712174 C T NPR3 Missense_Mutation p.R98C 0.06 deleterious(0.03) possibly_damaging(0.571) TCGA-DK-A3IU-01 5 34924954 34924954 C T BRIX1 Silent p.I222I 0.05 TCGA-DK-A3IU-01 5 49963917 49963917 C T PARP8 Missense_Mutation p.S35F 0.06 deleterious_low_confidence(0) benign(0.045) TCGA-DK-A3IU-01 5 52355784 52355784 C T ITGA2 Silent p.I418I 0.08 TCGA-DK-A3IU-01 5 63257013 63257013 C A HTR1A Silent p.P178P 0.17 TCGA-DK-A3IU-01 5 82833887 82833887 A G VCAN Missense_Mutation p.I1689V 0.16 tolerated(1) benign(0.001) TCGA-DK-A3IU-01 5 82835572 82835572 G A VCAN Silent p.E2250E 0.25 TCGA-DK-A3IU-01 5 83680215 83680215 C A EDIL3 5'UTR 0.18 TCGA-DK-A3IU-01 5 90149230 90149230 G A GPR98 Silent p.L5778L 0.13 TCGA-DK-A3IU-01 5 9042934 9042934 C T SEMA5A 3'UTR 0.09 TCGA-DK-A3IU-01 6 111702567 111702567 G A REV3L Nonsense_Mutation p.Q393* 0.05 TCGA-DK-A3IU-01 6 112512903 112512903 C G LAMA4 Missense_Mutation p.G218A 0.07 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 6 12123010 12123010 G A HIVEP1 Missense_Mutation p.M994I 0.03 tolerated(0.63) benign(0) TCGA-DK-A3IU-01 6 128326289 128326289 G C PTPRK Missense_Mutation p.L812V 0.10 tolerated(0.19) probably_damaging(0.979) TCGA-DK-A3IU-01 6 130505642 130505642 C A SAMD3 Missense_Mutation p.M170I 0.12 deleterious(0.01) benign(0.064) TCGA-DK-A3IU-01 6 130505656 130505656 G T SAMD3 Missense_Mutation p.P166T 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A3IU-01 6 132201159 132201159 T C ENPP1 Silent p.Y695Y 0.17 TCGA-DK-A3IU-01 6 137167279 137167279 C G PEX7 Missense_Mutation p.I162M 0.07 tolerated(0.11) possibly_damaging(0.542) TCGA-DK-A3IU-01 6 143828485 143828485 C T FUCA2 Missense_Mutation p.E101K 0.06 tolerated(0.15) benign(0.063) TCGA-DK-A3IU-01 6 152702384 152702384 C G SYNE1 Missense_Mutation p.E2922D 0.08 probably_damaging(0.99) TCGA-DK-A3IU-01 6 160555032 160555032 C T SLC22A1 Silent p.I238I 0.07 TCGA-DK-A3IU-01 6 160978430 160978430 G C LPA Missense_Mutation p.S1602C 0.06 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-DK-A3IU-01 6 169623568 169623568 C A THBS2 Missense_Mutation p.D926Y 0.06 deleterious(0) probably_damaging(1) TCGA-DK-A3IU-01 6 2769089 2769089 G A WRNIP1 Silent p.E329E 0.14 TCGA-DK-A3IU-01 6 30627933 30627933 G A DHX16 Missense_Mutation p.P544L 0.07 deleterious(0) unknown(0) TCGA-DK-A3IU-01 6 33146477 33146477 G A COL11A2 Silent p.L480L 0.05 TCGA-DK-A3IU-01 6 43481144 43481144 G C YIPF3 Missense_Mutation p.L163V 0.12 deleterious(0) possibly_damaging(0.871) TCGA-DK-A3IU-01 6 43752418 43752418 G C VEGFA 3'Flank 0.17 TCGA-DK-A3IU-01 6 55360227 55360227 G A HMGCLL1 Missense_Mutation p.T292M 0.10 tolerated(0.19) benign(0.432) TCGA-DK-A3IU-01 6 56334713 56334713 G A DST Nonsense_Mutation p.Q4884* 0.12 TCGA-DK-A3IU-01 6 73787121 73787121 C G KCNQ5 Silent p.L231L 0.10 TCGA-DK-A3IU-01 6 7899902 7899902 G A TXNDC5 Silent p.F142F 0.12 TCGA-DK-A3IU-01 6 97613184 97613184 C T MMS22L Silent p.L1053L 0.16 TCGA-DK-A3IU-01 7 100283075 100283075 G A GIGYF1 Nonsense_Mutation p.Q362* 0.11 TCGA-DK-A3IU-01 7 100696366 100696366 G A MUC17 Silent p.L4401L 0.11 TCGA-DK-A3IU-01 7 103848302 103848302 G A ORC5 Silent p.I17I 0.09 TCGA-DK-A3IU-01 7 107626630 107626630 G T LAMB1 Missense_Mutation p.T201N 0.14 deleterious(0) probably_damaging(0.991) TCGA-DK-A3IU-01 7 110526696 110526696 C T IMMP2L Missense_Mutation p.E121K 0.08 deleterious(0) probably_damaging(0.994) TCGA-DK-A3IU-01 7 128495342 128495342 C T FLNC Missense_Mutation p.R2409C 0.16 tolerated(0.06) probably_damaging(0.969) TCGA-DK-A3IU-01 7 132973814 132973814 C G EXOC4 Missense_Mutation p.Q139E 0.17 tolerated(1) possibly_damaging(0.703) TCGA-DK-A3IU-01 7 133502151 133502151 G T EXOC4 Missense_Mutation p.V530L 0.08 tolerated(0.66) benign(0.003) TCGA-DK-A3IU-01 7 137782615 137782615 G A AKR1D1 Missense_Mutation p.G128R 0.25 deleterious(0.01) probably_damaging(1) TCGA-DK-A3IU-01 7 139826545 139826545 G C KDM7A Silent p.V260V 0.12 TCGA-DK-A3IU-01 7 14028311 14028311 C T ETV1 Intron 0.07 TCGA-DK-A3IU-01 7 141752666 141752666 G A MGAM Missense_Mutation p.G1014E 0.16 deleterious(0.04) possibly_damaging(0.892) TCGA-DK-A3IU-01 7 141759285 141759285 C G MGAM Nonsense_Mutation p.S1278* 0.23 TCGA-DK-A3IU-01 7 14188674 14188674 G A DGKB 3'UTR 0.15 TCGA-DK-A3IU-01 7 143884376 143884376 T G ARHGEF35 Missense_Mutation p.K367N 0.11 tolerated(0.1) benign(0.134) TCGA-DK-A3IU-01 7 17382607 17382607 G C AHR Missense_Mutation p.Q822H 0.22 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-DK-A3IU-01 7 20668380 20668380 G T ABCB5 Missense_Mutation p.A60S 0.07 tolerated(0.31) benign(0.087) TCGA-DK-A3IU-01 7 20685503 20685503 G A ABCB5 Missense_Mutation p.R268K 0.14 tolerated(0.07) possibly_damaging(0.54) TCGA-DK-A3IU-01 7 20698699 20698699 G A ABCB5 Intron 0.10 TCGA-DK-A3IU-01 7 27196190 27196190 G A HOXA7 5'UTR 0.10 TCGA-DK-A3IU-01 7 34917785 34917785 C T NPSR1 Missense_Mutation p.L375F 0.17 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-DK-A3IU-01 7 38304969 38304969 G C TRGC1 Missense_Mutation p.I104M 0.10 deleterious(0.01) benign(0.169) TCGA-DK-A3IU-01 7 63538396 63538396 G A ZNF727 Nonsense_Mutation p.W323* 0.09 TCGA-DK-A3IU-01 7 64838908 64838908 G C ZNF92 5'UTR 0.08 TCGA-DK-A3IU-01 7 65705934 65705934 C T TPST1 Silent p.F174F 0.06 TCGA-DK-A3IU-01 7 72891929 72891929 G C BAZ1B Missense_Mutation p.S621C 0.08 deleterious(0) possibly_damaging(0.885) TCGA-DK-A3IU-01 7 73245432 73245432 C T CLDN4 5'UTR 0.14 TCGA-DK-A3IU-01 7 82579161 82579161 C T PCLO Silent p.L3581L 0.11 TCGA-DK-A3IU-01 7 86469220 86469220 G A GRM3 Missense_Mutation p.R797K 0.06 tolerated(0.33) possibly_damaging(0.803) TCGA-DK-A3IU-01 7 87757941 87757941 G C ADAM22 Missense_Mutation p.E235Q 0.06 tolerated(0.45) benign(0.008) TCGA-DK-A3IU-01 7 99264357 99264357 C G CYP3A5 Intron 0.07 TCGA-DK-A3IU-01 7 99695470 99695470 C G MCM7 Silent p.L324L 0.07 TCGA-DK-A3IU-01 7 99998716 99998716 C G ZCWPW1 Missense_Mutation p.R623T 0.09 tolerated_low_confidence(0.13) benign(0.002) TCGA-DK-A3IU-01 8 100712095 100712095 G A VPS13B Missense_Mutation p.C2155Y 0.11 tolerated(0.11) benign(0.384) TCGA-DK-A3IU-01 8 103564039 103564039 C T ODF1 Silent p.I28I 0.14 TCGA-DK-A3IU-01 8 104337008 104337008 G C FZD6 Missense_Mutation p.R225T 0.11 tolerated(0.52) benign(0.004) TCGA-DK-A3IU-01 8 104922586 104922586 G T RIMS2 Intron 0.08 TCGA-DK-A3IU-01 8 105509412 105509412 G A LRP12 Silent p.F456F 0.13 TCGA-DK-A3IU-01 8 110255327 110255327 G A NUDCD1 Missense_Mutation p.P555S 0.13 tolerated(0.3) benign(0.017) TCGA-DK-A3IU-01 8 113267562 113267562 A G CSMD3 Silent p.F3319F 0.12 TCGA-DK-A3IU-01 8 120430374 120430374 C A NOV Missense_Mutation p.F129L 0.12 tolerated(0.24) benign(0.314) TCGA-DK-A3IU-01 8 133880419 133880419 C T TG Silent p.L43L 0.09 TCGA-DK-A3IU-01 8 133945805 133945805 G A TG Splice_Site p.X1606_splice 0.09 TCGA-DK-A3IU-01 8 139158273 139158273 G T FAM135B Missense_Mutation p.L1157M 0.17 deleterious(0) probably_damaging(0.986) TCGA-DK-A3IU-01 8 139160802 139160802 C T FAM135B Missense_Mutation p.D1137N 0.11 deleterious(0.01) benign(0.402) TCGA-DK-A3IU-01 8 144899273 144899273 G A PUF60 Missense_Mutation p.S396L 0.12 tolerated(0.36) benign(0.006) TCGA-DK-A3IU-01 8 144921577 144921577 G C NRBP2 Missense_Mutation p.F163L 0.29 deleterious(0) possibly_damaging(0.654) TCGA-DK-A3IU-01 8 144940861 144940861 G A EPPK1 Silent p.L2187L 0.12 TCGA-DK-A3IU-01 8 144940900 144940900 G C EPPK1 Missense_Mutation p.F2174L 0.10 probably_damaging(0.97) TCGA-DK-A3IU-01 8 144941013 144941013 G C EPPK1 Missense_Mutation p.L2137V 0.12 benign(0.051) TCGA-DK-A3IU-01 8 144941802 144941802 G A EPPK1 Missense_Mutation p.R1874C 0.19 benign(0.001) TCGA-DK-A3IU-01 8 144992989 144992989 C A PLEC Missense_Mutation p.R3804L 0.13 possibly_damaging(0.809) TCGA-DK-A3IU-01 8 17928835 17928835 C T ASAH1 Missense_Mutation p.E80K 0.14 tolerated(0.15) benign(0.013) TCGA-DK-A3IU-01 8 1806263 1806263 G A ARHGEF10 Missense_Mutation p.E59K 0.13 tolerated_low_confidence(0.21) benign(0.06) TCGA-DK-A3IU-01 8 53586766 53586766 C G RB1CC1 Missense_Mutation p.R214T 0.06 tolerated(0.05) benign(0.357) TCGA-DK-A3IU-01 8 55533796 55533796 C T RP1 Silent p.H90H 0.06 TCGA-DK-A3IU-01 8 59345738 59345738 A T UBXN2B Missense_Mutation p.Y120F 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-DK-A3IU-01 8 67576615 67576615 G A VCPIP1 Missense_Mutation p.S860F 0.05 tolerated(0.07) benign(0.173) TCGA-DK-A3IU-01 8 87486538 87486538 C T RMDN1 Silent p.%3D 0.07 TCGA-DK-A3IU-01 8 88885230 88885230 C A DCAF4L2 Nonsense_Mutation p.E324* 0.11 TCGA-DK-A3IU-01 9 100971023 100971023 C T TBC1D2 Missense_Mutation p.D693N 0.06 tolerated(0.31) benign(0.043) TCGA-DK-A3IU-01 9 112166859 112166859 C T PTPN3 Missense_Mutation p.E608K 0.18 tolerated(0.11) benign(0.06) TCGA-DK-A3IU-01 9 116973277 116973277 C A COL27A1 Missense_Mutation p.P780T 0.06 unknown(0) TCGA-DK-A3IU-01 9 116973287 116973287 G T COL27A1 Missense_Mutation p.R783M 0.07 unknown(0) TCGA-DK-A3IU-01 9 117188538 117188538 C G DFNB31 Missense_Mutation p.K373N 0.09 deleterious(0.02) possibly_damaging(0.519) TCGA-DK-A3IU-01 9 125909232 125909232 G T STRBP Missense_Mutation p.H414N 0.09 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IU-01 9 131709575 131709575 C T DOLK Missense_Mutation p.R3Q 0.17 tolerated_low_confidence(0.16) benign(0.417) TCGA-DK-A3IU-01 9 2054650 2054650 C T SMARCA2 Missense_Mutation p.S367F 0.17 possibly_damaging(0.485) TCGA-DK-A3IU-01 9 27566843 27566843 C T C9orf72 Silent p.V92V 0.07 TCGA-DK-A3IU-01 9 33313681 33313681 C T NFX1 Missense_Mutation p.S493L 0.11 tolerated(0.41) benign(0.002) TCGA-DK-A3IU-01 9 34635839 34635839 G A SIGMAR1 Silent p.H154H 0.19 TCGA-DK-A3IU-01 9 36276902 36276902 G A GNE Nonsense_Mutation p.Q14* 0.20 TCGA-DK-A3IU-01 9 5968412 5968412 G A KIAA2026 Missense_Mutation p.P607S 0.07 tolerated(0.2) probably_damaging(0.998) TCGA-DK-A3IU-01 9 84532195 84532195 C T SPATA31D5P RNA 0.18 TCGA-DK-A3IU-01 X 101912847 101912847 C T GPRASP1 Nonsense_Mutation p.Q1336* 0.17 TCGA-DK-A3IU-01 X 102471435 102471435 C T BEX4 Silent p.L118L 0.16 TCGA-DK-A3IU-01 X 103499470 103499470 C T ESX1 Missense_Mutation p.E21K 0.05 tolerated_low_confidence(0.14) possibly_damaging(0.651) TCGA-DK-A3IU-01 X 105281023 105281023 G C SERPINA7 Silent p.L9L 0.23 TCGA-DK-A3IU-01 X 106797644 106797644 G A FRMPD3 Missense_Mutation p.M257I 0.19 deleterious(0.03) possibly_damaging(0.848) TCGA-DK-A3IU-01 X 142718202 142718202 G T SLITRK4 Silent p.I241I 0.29 TCGA-DK-A3IU-01 X 20194392 20194392 C G RPS6KA3 Missense_Mutation p.E360Q 0.13 deleterious(0.02) probably_damaging(0.954) TCGA-DK-A3IU-01 X 30872614 30872614 G A TAB3 Nonsense_Mutation p.Q390* 0.05 TCGA-DK-A3IU-01 X 50659572 50659572 G A BMP15 Missense_Mutation p.E382K 0.09 deleterious(0) possibly_damaging(0.513) TCGA-DK-A3IU-01 X 52844216 52844216 A C XAGE5 Silent p.S93S 0.22 TCGA-DK-A3IU-01 X 53578272 53578272 C G HUWE1 Silent p.V3017V 0.25 TCGA-DK-A3IU-01 X 73814150 73814150 C T RLIM Missense_Mutation p.E82K 0.13 tolerated(0.2) unknown(0) TCGA-DK-A3IU-01 X 74291394 74291394 C A ABCB7 Missense_Mutation p.S387I 0.05 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IV-01 10 124793889 124793889 G T ACADSB Silent p.L20L 0.40 TCGA-DK-A3IV-01 10 38121105 38121105 G C ZNF248 Nonsense_Mutation p.S393* 0.22 TCGA-DK-A3IV-01 10 91353589 91353589 C T PANK1 Missense_Mutation p.G490R 0.05 deleterious(0) probably_damaging(1) TCGA-DK-A3IV-01 11 66033397 66033397 C T KLC2 Missense_Mutation p.R506C 0.06 deleterious(0) possibly_damaging(0.462) TCGA-DK-A3IV-01 11 75283166 75283166 A G SERPINH1 3'UTR 0.44 TCGA-DK-A3IV-01 11 78419499 78419499 G C TENM4 Missense_Mutation p.I1372M 0.62 deleterious(0) possibly_damaging(0.809) TCGA-DK-A3IV-01 11 85420380 85420380 G C SYTL2 Nonsense_Mutation p.S1003* 0.45 TCGA-DK-A3IV-01 12 113873341 113873341 C G SDSL Silent p.V217V 0.16 TCGA-DK-A3IV-01 12 124345688 124345688 C G DNAH10 Missense_Mutation p.I2175M 0.16 benign(0.133) TCGA-DK-A3IV-01 12 54448079 54448079 C T HOXC4 Missense_Mutation p.P125S 0.17 tolerated(0.33) benign(0.031) TCGA-DK-A3IV-01 12 64196067 64196067 G C TMEM5 Missense_Mutation p.E209Q 0.18 tolerated(0.12) benign(0.061) TCGA-DK-A3IV-01 12 76763454 76763454 C G OSBPL8 Missense_Mutation p.D735H 0.22 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IV-01 13 19751303 19751303 G A TUBA3C Missense_Mutation p.P274S 0.22 deleterious_low_confidence(0.01) benign(0.349) TCGA-DK-A3IV-01 13 48947629 48947629 G A RB1 Splice_Site p.X405_splice 0.35 TCGA-DK-A3IV-01 14 47530528 47530528 C T MDGA2 Silent p.T483T 0.24 TCGA-DK-A3IV-01 14 57268797 57268797 G A OTX2 Missense_Mutation p.P184S 0.24 tolerated(0.16) benign(0.088) TCGA-DK-A3IV-01 14 62211433 62211433 C A HIF1A Missense_Mutation p.P726T 0.26 tolerated(0.52) benign(0.001) TCGA-DK-A3IV-01 15 41245807 41245807 A T CHAC1 Missense_Mutation p.N51I 0.19 deleterious_low_confidence(0.01) benign(0.094) TCGA-DK-A3IV-01 15 69709843 69709843 A G KIF23 Missense_Mutation p.Y68C 0.29 tolerated(0.05) probably_damaging(0.928) TCGA-DK-A3IV-01 15 75094356 75094356 G A CSK Missense_Mutation p.D368N 0.34 deleterious(0) probably_damaging(0.999) TCGA-DK-A3IV-01 15 75094364 75094364 G T CSK Missense_Mutation p.W370C 0.35 deleterious(0) probably_damaging(1) TCGA-DK-A3IV-01 16 20370721 20370721 C T PDILT Missense_Mutation p.E559K 0.14 tolerated_low_confidence(0.2) benign(0) TCGA-DK-A3IV-01 17 28380460 28380460 G A EFCAB5 Silent p.Q496Q 0.22 TCGA-DK-A3IV-01 17 4496232 4496232 G A SMTNL2 Missense_Mutation p.D166N 0.61 tolerated(0.4) benign(0.003) TCGA-DK-A3IV-01 17 47395037 47395037 C T ZNF652 Silent p.V17V 0.12 TCGA-DK-A3IV-01 17 60028189 60028189 A G MED13 Silent p.L2096L 0.34 TCGA-DK-A3IV-01 17 62290518 62290518 C T TEX2 Missense_Mutation p.E354K 0.22 tolerated(0.11) possibly_damaging(0.885) TCGA-DK-A3IV-01 17 73723498 73723498 G A ITGB4 Missense_Mutation p.R59Q 0.19 tolerated(0.53) benign(0.056) TCGA-DK-A3IV-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.45 deleterious(0) probably_damaging(0.985) TCGA-DK-A3IV-01 18 29848220 29848220 C T GAREM Missense_Mutation p.D749N 0.28 tolerated(0.33) probably_damaging(0.917) TCGA-DK-A3IV-01 19 38579389 38579389 G A SIPA1L3 Silent p.E521E 0.31 TCGA-DK-A3IV-01 19 40228601 40228601 C T CLC 5'UTR 0.20 TCGA-DK-A3IV-01 19 42931254 42931254 T C LIPE Silent p.E16E 0.21 TCGA-DK-A3IV-01 19 44933766 44933766 C T ZNF229 Missense_Mutation p.R397K 0.36 tolerated(0.31) possibly_damaging(0.481) TCGA-DK-A3IV-01 19 4792857 4792857 C T FEM1A Nonsense_Mutation p.Q331* 0.37 TCGA-DK-A3IV-01 19 53209409 53209409 G T ZNF611 Nonsense_Mutation p.S300* 0.11 TCGA-DK-A3IV-01 19 55993619 55993619 G T ZNF628 Silent p.A353A 0.61 TCGA-DK-A3IV-01 1 1268918 1268918 G T TAS1R3 Nonsense_Mutation p.E545* 0.28 TCGA-DK-A3IV-01 1 16802945 16802945 G A CROCCP3 RNA 0.24 TCGA-DK-A3IV-01 1 172410941 172410941 A G PIGC Silent p.L274L 0.21 TCGA-DK-A3IV-01 1 197059202 197059202 C T ASPM Missense_Mutation p.R3281K 0.28 deleterious(0.01) possibly_damaging(0.748) TCGA-DK-A3IV-01 1 203025554 203025554 G A PPFIA4 Missense_Mutation p.E214K 0.14 deleterious(0.01) benign(0.031) TCGA-DK-A3IV-01 1 204951129 204951129 C T NFASC Silent p.I817I 0.38 TCGA-DK-A3IV-01 1 247901963 247901963 C T OR14K1 Missense_Mutation p.T16I 0.35 deleterious(0.01) benign(0.026) TCGA-DK-A3IV-01 1 47904409 47904409 G A FOXD2 Nonsense_Mutation p.W201* 0.27 TCGA-DK-A3IV-01 20 36012632 36012632 G A SRC Missense_Mutation p.G26S 0.14 tolerated_low_confidence(0.44) benign(0.012) TCGA-DK-A3IV-01 20 62044922 62044922 G A KCNQ2 Silent p.F548F 0.24 TCGA-DK-A3IV-01 22 18210132 18210132 G A BCL2L13 Silent p.E430E 0.26 TCGA-DK-A3IV-01 22 23438065 23438065 C T GNAZ Silent p.F61F 0.36 TCGA-DK-A3IV-01 2 179613777 179613777 G C TTN Intron 0.09 TCGA-DK-A3IV-01 2 204058632 204058632 G C NBEAL1 Missense_Mutation p.E2317Q 0.09 deleterious(0) probably_damaging(0.995) TCGA-DK-A3IV-01 2 217342939 217342939 G C SMARCAL1 Missense_Mutation p.E848Q 0.39 deleterious(0.01) possibly_damaging(0.889) TCGA-DK-A3IV-01 2 225651829 225651829 G A DOCK10 Silent p.D1855D 0.06 TCGA-DK-A3IV-01 2 232373905 232373905 C A LINC00471 RNA 0.34 TCGA-DK-A3IV-01 2 80530714 80530714 G A LRRTM1 Silent p.L77L 0.05 TCGA-DK-A3IV-01 3 100463681 100463681 G C TFG Missense_Mutation p.Q242H 0.31 tolerated(0.08) benign(0.216) TCGA-DK-A3IV-01 3 10107166 10107166 G A FANCD2 Missense_Mutation p.D753N 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-DK-A3IV-01 3 113619898 113619898 C G GRAMD1C Missense_Mutation p.F187L 0.28 tolerated(1) benign(0.159) TCGA-DK-A3IV-01 3 122126256 122126256 C T FAM162A Intron 0.31 TCGA-DK-A3IV-01 3 131100691 131100691 C G NUDT16 Missense_Mutation p.L15V 0.41 deleterious_low_confidence(0.02) unknown(0) TCGA-DK-A3IV-01 3 13367407 13367407 G A NUP210 Missense_Mutation p.S1511L 0.17 deleterious(0.01) benign(0.397) TCGA-DK-A3IV-01 3 139236517 139236517 C T RBP1 Missense_Mutation p.M182I 0.26 tolerated(0.15) benign(0.006) TCGA-DK-A3IV-01 3 156260950 156260950 G C SSR3 3'UTR 0.49 TCGA-DK-A3IV-01 3 52552854 52552854 C G STAB1 Nonsense_Mutation p.S1668* 0.12 TCGA-DK-A3IV-01 3 98531284 98531284 T C DCBLD2 Missense_Mutation p.N419D 0.27 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IV-01 4 139966392 139966392 G C CCRN4L Missense_Mutation p.D354H 0.24 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IV-01 4 174450071 174450071 C G HAND2 Missense_Mutation p.E124Q 0.24 deleterious(0.01) benign(0.415) TCGA-DK-A3IV-01 4 186379933 186379933 C T CCDC110 Missense_Mutation p.G603E 0.34 tolerated(1) benign(0) TCGA-DK-A3IV-01 4 186427673 186427673 C T PDLIM3 Intron 0.41 TCGA-DK-A3IV-01 4 70160324 70160324 T A UGT2B28 Missense_Mutation p.W463R 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A3IV-01 5 143587001 143587001 G A KCTD16 Missense_Mutation p.E242K 0.29 deleterious(0) probably_damaging(0.989) TCGA-DK-A3IV-01 5 24491853 24491853 C G CDH10 Missense_Mutation p.D570H 0.06 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IV-01 5 32074304 32074304 C T PDZD2 Missense_Mutation p.S1031L 0.67 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IV-01 5 54586091 54586091 G C DHX29 Missense_Mutation p.Q288E 0.27 tolerated(0.74) benign(0.008) TCGA-DK-A3IV-01 5 59893730 59893730 G A DEPDC1B Silent p.S480S 0.25 TCGA-DK-A3IV-01 5 74324587 74324587 C G GCNT4 Missense_Mutation p.E426Q 0.33 deleterious(0.02) possibly_damaging(0.53) TCGA-DK-A3IV-01 6 116600209 116600209 C G TSPYL1 Missense_Mutation p.R262P 0.20 deleterious(0) probably_damaging(0.983) TCGA-DK-A3IV-01 6 131490373 131490373 G A AKAP7 Silent p.L183L 0.23 TCGA-DK-A3IV-01 6 167590518 167590518 C T TCP10L2 Silent p.L132L 0.22 TCGA-DK-A3IV-01 6 25665182 25665182 G A SCGN Missense_Mutation p.M86I 0.29 tolerated(0.97) benign(0.002) TCGA-DK-A3IV-01 6 32155525 32155525 C T PBX2 Missense_Mutation p.E257K 0.23 deleterious(0.04) possibly_damaging(0.627) TCGA-DK-A3IV-01 6 36652127 36652134 GCGAGGCC - CDKN1A Frame_Shift_Del p.R84Gfs*2 0.18 TCGA-DK-A3IV-01 6 39895360 39895360 C T MOCS1 5'UTR 0.27 TCGA-DK-A3IV-01 6 50791308 50791308 C T TFAP2B Silent p.N90N 0.29 TCGA-DK-A3IV-01 6 55360317 55360317 A T HMGCLL1 Missense_Mutation p.M262K 0.28 deleterious(0) probably_damaging(0.985) TCGA-DK-A3IV-01 6 82910377 82910377 C G IBTK Missense_Mutation p.D947H 0.16 deleterious(0) probably_damaging(0.997) TCGA-DK-A3IV-01 6 90024839 90024839 C A GABRR2 Missense_Mutation p.V16F 0.27 tolerated_low_confidence(0.15) benign(0.1) TCGA-DK-A3IV-01 7 148895819 148895819 C T ZNF282 Missense_Mutation p.P187L 0.12 deleterious(0) probably_damaging(0.998) TCGA-DK-A3IV-01 7 21695538 21695538 G C DNAH11 Missense_Mutation p.G1683A 0.10 probably_damaging(0.924) TCGA-DK-A3IV-01 7 47832313 47832313 G C PKD1L1 Missense_Mutation p.P2813R 0.30 deleterious(0) possibly_damaging(0.856) TCGA-DK-A3IV-01 7 87011302 87011302 G C CROT Missense_Mutation p.R380T 0.11 tolerated(0.54) benign(0.043) TCGA-DK-A3IV-01 7 94164632 94164632 G A CASD1 Missense_Mutation p.E214K 0.22 tolerated(0.06) possibly_damaging(0.908) TCGA-DK-A3IV-01 7 99709745 99709745 C T TAF6 Missense_Mutation p.E273K 0.33 tolerated(0.05) benign(0.244) TCGA-DK-A3IV-01 8 145018067 145018067 C T PLEC Intron 0.29 TCGA-DK-A3IV-01 8 25174557 25174557 C G DOCK5 Missense_Mutation p.I451M 0.05 tolerated(0.08) benign(0.392) TCGA-DK-A3IV-01 8 86574505 86574505 C A REXO1L1P Missense_Mutation p.D408Y 0.09 deleterious(0) probably_damaging(0.991) TCGA-DK-A3IV-01 9 111663910 111663910 C T IKBKAP Missense_Mutation p.E636K 0.23 tolerated(0.06) probably_damaging(0.973) TCGA-DK-A3IV-01 9 86571110 86571110 C A C9orf64 Silent p.L102L 0.18 TCGA-DK-A3IV-01 X 107977994 107977994 C A IRS4 Missense_Mutation p.Q527H 0.12 tolerated_low_confidence(0.06) unknown(0) TCGA-DK-A3IV-01 X 107977998 107977998 C T IRS4 Missense_Mutation p.G526E 0.11 tolerated_low_confidence(0.1) unknown(0) TCGA-DK-A3IV-01 X 107978050 107978050 C T IRS4 Missense_Mutation p.G509S 0.11 deleterious_low_confidence(0) unknown(0) TCGA-DK-A3IV-01 X 107978105 107978105 C G IRS4 Missense_Mutation p.M490I 0.11 tolerated_low_confidence(0.05) benign(0.135) TCGA-DK-A3IV-01 X 107978140 107978140 C G IRS4 Missense_Mutation p.D479H 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.706) TCGA-DK-A3IV-01 X 107978233 107978233 C T IRS4 Missense_Mutation p.E448K 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.632) TCGA-DK-A3WW-01 10 101639649 101639649 G T DNMBP Silent p.L1489L 0.24 TCGA-DK-A3WW-01 10 102799363 102799363 C T SFXN3 3'UTR 0.33 TCGA-DK-A3WW-01 10 102824730 102824730 G C KAZALD1 3'UTR 0.22 TCGA-DK-A3WW-01 10 102824736 102824736 G A KAZALD1 3'UTR 0.19 TCGA-DK-A3WW-01 10 103372196 103372196 G A FBXW4 Missense_Mutation p.P292L 0.18 tolerated(0.18) benign(0.005) TCGA-DK-A3WW-01 10 103607320 103607320 C A C10orf76 Nonsense_Mutation p.E679* 0.26 TCGA-DK-A3WW-01 10 105037875 105037875 G A INA Missense_Mutation p.E303K 0.26 deleterious(0) possibly_damaging(0.574) TCGA-DK-A3WW-01 10 105762646 105762646 G C SLK Missense_Mutation p.Q570H 0.18 tolerated(0.05) benign(0.009) TCGA-DK-A3WW-01 10 105948061 105948061 C T WDR96 Missense_Mutation p.E552K 0.27 deleterious(0.05) benign(0.127) TCGA-DK-A3WW-01 10 108378015 108378015 C T SORCS1 Missense_Mutation p.E938K 0.23 deleterious(0.04) benign(0.126) TCGA-DK-A3WW-01 10 112361525 112361525 G A SMC3 Missense_Mutation p.M925I 0.28 tolerated(0.96) benign(0.004) TCGA-DK-A3WW-01 10 118354358 118354358 G C PNLIPRP1 Missense_Mutation p.Q149H 0.18 tolerated(0.08) benign(0.003) TCGA-DK-A3WW-01 10 118704476 118704476 C T KIAA1598 Missense_Mutation p.E224K 0.21 deleterious(0) probably_damaging(0.994) TCGA-DK-A3WW-01 10 119044215 119044215 G C PDZD8 Missense_Mutation p.Q677E 0.17 tolerated(0.38) benign(0.075) TCGA-DK-A3WW-01 10 12043687 12043687 G C UPF2 Missense_Mutation p.L548V 0.09 tolerated(0.49) benign(0.024) TCGA-DK-A3WW-01 10 124697599 124697599 G A C10orf88 Missense_Mutation p.S242F 0.23 deleterious(0.01) possibly_damaging(0.509) TCGA-DK-A3WW-01 10 126631753 126631753 C T ZRANB1 Nonsense_Mutation p.Q231* 0.29 TCGA-DK-A3WW-01 10 129904353 129904353 G A MKI67 Silent p.I1917I 0.24 TCGA-DK-A3WW-01 10 131969878 131969878 C G GLRX3 Missense_Mutation p.L268V 0.19 tolerated(1) benign(0.004) TCGA-DK-A3WW-01 10 132891345 132891345 C T TCERG1L 3'UTR 0.27 TCGA-DK-A3WW-01 10 133918366 133918366 C T JAKMIP3 Silent p.L18L 0.33 TCGA-DK-A3WW-01 10 134219649 134219649 G A PWWP2B Missense_Mutation p.E549K 0.28 deleterious(0) probably_damaging(0.981) TCGA-DK-A3WW-01 10 13494604 13494604 C G BEND7 Missense_Mutation p.R321T 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A3WW-01 10 17271570 17271570 G A VIM Missense_Mutation p.R50H 0.26 tolerated(0.2) probably_damaging(0.938) TCGA-DK-A3WW-01 10 27294520 27294520 C G ANKRD26 Nonstop_Mutation p.*1711Sext*22 0.23 TCGA-DK-A3WW-01 10 27403470 27403470 C G YME1L1 Missense_Mutation p.E720Q 0.22 deleterious(0) probably_damaging(0.983) TCGA-DK-A3WW-01 10 27458964 27458964 G A MASTL Missense_Mutation p.G359D 0.19 tolerated(0.59) benign(0.066) TCGA-DK-A3WW-01 10 28032180 28032180 G C MKX Silent p.L55L 0.14 TCGA-DK-A3WW-01 10 29754631 29754631 G A SVIL Missense_Mutation p.S2009F 0.19 deleterious(0) probably_damaging(0.984) TCGA-DK-A3WW-01 10 3206032 3206032 G A PITRM1 Missense_Mutation p.L226F 0.26 deleterious(0.01) benign(0.259) TCGA-DK-A3WW-01 10 32575725 32575725 C T EPC1 Missense_Mutation p.D430N 0.17 tolerated(0.05) benign(0.046) TCGA-DK-A3WW-01 10 32800581 32800581 C T CCDC7 Intron 0.18 TCGA-DK-A3WW-01 10 43615571 43615571 G A RET Missense_Mutation p.E884K 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A3WW-01 10 49812979 49812979 C T ARHGAP22 5'UTR 0.21 TCGA-DK-A3WW-01 10 50374939 50374939 C G C10orf128 Silent p.L71L 0.26 TCGA-DK-A3WW-01 10 50678885 50678885 G A ERCC6 Nonsense_Mutation p.Q1041* 0.21 TCGA-DK-A3WW-01 10 50857645 50857645 C G CHAT Missense_Mutation p.Q492E 0.18 tolerated(0.15) benign(0.076) TCGA-DK-A3WW-01 10 51768909 51768909 G T AGAP6 Nonsense_Mutation p.G342* 0.21 TCGA-DK-A3WW-01 10 51769497 51769497 G A AGAP6 Missense_Mutation p.D538N 0.25 tolerated(0.14) benign(0.348) TCGA-DK-A3WW-01 10 53459127 53459127 G T CSTF2T Missense_Mutation p.F61L 0.21 deleterious(0) probably_damaging(0.983) TCGA-DK-A3WW-01 10 5498204 5498204 C G NET1 Missense_Mutation p.S451C 0.22 deleterious(0) probably_damaging(0.977) TCGA-DK-A3WW-01 10 5772507 5772507 C G FAM208B Missense_Mutation p.S182C 0.24 deleterious(0) benign(0) TCGA-DK-A3WW-01 10 61815494 61815494 C T ANK3 Missense_Mutation p.M4329I 0.26 benign(0.038) TCGA-DK-A3WW-01 10 64952854 64952854 G A JMJD1C Nonsense_Mutation p.Q1974* 0.23 TCGA-DK-A3WW-01 10 69902716 69902716 G T MYPN Nonsense_Mutation p.E308* 0.19 TCGA-DK-A3WW-01 10 69991290 69991290 C T ATOH7 Missense_Mutation p.E49K 0.23 deleterious(0) probably_damaging(0.974) TCGA-DK-A3WW-01 10 71008329 71008329 G A HKDC1 Missense_Mutation p.R472K 0.30 tolerated(0.45) benign(0.002) TCGA-DK-A3WW-01 10 72179690 72179691 AG - EIF4EBP2 Frame_Shift_Del p.R56Kfs*27 0.20 TCGA-DK-A3WW-01 10 73437306 73437306 G A CDH23 Silent p.R128R 0.29 TCGA-DK-A3WW-01 10 75567556 75567556 G A NDST2 Silent p.L197L 0.21 TCGA-DK-A3WW-01 10 77158843 77158843 C T ZNF503 Silent p.L535L 0.23 TCGA-DK-A3WW-01 10 82180126 82180126 C G FAM213A 5'UTR 0.24 TCGA-DK-A3WW-01 10 860896 860896 G A LARP4B Missense_Mutation p.H604Y 0.23 deleterious(0.04) benign(0.162) TCGA-DK-A3WW-01 10 88704122 88704122 G A MMRN2 Silent p.L184L 0.26 TCGA-DK-A3WW-01 10 88717329 88717329 C G MMRN2 5'UTR 0.29 TCGA-DK-A3WW-01 10 88822464 88822464 C T GLUD1 Missense_Mutation p.M290I 0.31 deleterious(0) possibly_damaging(0.546) TCGA-DK-A3WW-01 10 88822583 88822583 C T GLUD1 Missense_Mutation p.A251T 0.21 tolerated(0.05) benign(0.22) TCGA-DK-A3WW-01 10 89725197 89725197 G A PTEN Missense_Mutation p.E394K 0.31 deleterious_low_confidence(0.02) benign(0.272) TCGA-DK-A3WW-01 10 91528126 91528126 C T KIF20B Missense_Mutation p.S1650F 0.32 deleterious(0.05) probably_damaging(0.999) TCGA-DK-A3WW-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.35 TCGA-DK-A3WW-01 10 97769626 97769626 G C CC2D2B Missense_Mutation p.K22N 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 10 98087257 98087257 G A DNTT Missense_Mutation p.V303M 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 10 98145844 98145844 G A TLL2 Nonsense_Mutation p.Q661* 0.23 TCGA-DK-A3WW-01 10 98744637 98744637 G C C10orf12 Missense_Mutation p.E1164Q 0.28 tolerated(0.32) probably_damaging(0.988) TCGA-DK-A3WW-01 10 99123623 99123623 C T RRP12 Silent p.V1185V 0.20 TCGA-DK-A3WW-01 10 99994257 99994257 C G R3HCC1L Missense_Mutation p.F672L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 11 1008107 1008107 G A AP2A2 Missense_Mutation p.E798K 0.26 tolerated(0.46) benign(0.113) TCGA-DK-A3WW-01 11 100998975 100998975 G A PGR Missense_Mutation p.S276L 0.29 tolerated_low_confidence(0.24) benign(0.007) TCGA-DK-A3WW-01 11 102272716 102272716 G C TMEM123 Missense_Mutation p.Q127E 0.28 deleterious(0.03) benign(0.092) TCGA-DK-A3WW-01 11 102742592 102742592 C G MMP12 RNA 0.32 TCGA-DK-A3WW-01 11 10483090 10483090 G A AMPD3 Silent p.L17L 0.22 TCGA-DK-A3WW-01 11 105880615 105880615 C T MSANTD4 Missense_Mutation p.E229K 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A3WW-01 11 106888480 106888480 G A GUCY1A2 Missense_Mutation p.S101L 0.33 tolerated(0.14) benign(0.014) TCGA-DK-A3WW-01 11 107463110 107463110 G A AP000889.3 Missense_Mutation p.G103E 0.35 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-DK-A3WW-01 11 108192065 108192065 G C ATM Missense_Mutation p.E2164Q 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 11 108196791 108196791 G T ATM Nonsense_Mutation p.E2272* 0.21 TCGA-DK-A3WW-01 11 108382527 108382527 G A EXPH5 Missense_Mutation p.S1236F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 11 108547945 108547945 C A DDX10 Nonsense_Mutation p.S171* 0.21 TCGA-DK-A3WW-01 11 108811112 108811112 G A DDX10 Missense_Mutation p.E864K 0.12 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 11 1088741 1088741 G A MUC2 Missense_Mutation p.E1176K 0.15 probably_damaging(0.985) TCGA-DK-A3WW-01 11 111754506 111754506 G A C11orf1 Missense_Mutation p.E119K 0.27 tolerated(0.1) benign(0.088) TCGA-DK-A3WW-01 11 111888513 111888513 G A DIXDC1 Silent p.V624V 0.16 TCGA-DK-A3WW-01 11 113631013 113631013 G C ZW10 Silent p.L166L 0.20 TCGA-DK-A3WW-01 11 114168699 114168699 G A NNMT Missense_Mutation p.D61N 0.15 tolerated(0.07) probably_damaging(0.993) TCGA-DK-A3WW-01 11 117244524 117244524 G A CEP164 Missense_Mutation p.D404N 0.29 tolerated(0.11) benign(0.275) TCGA-DK-A3WW-01 11 117308767 117308767 C G DSCAML1 Missense_Mutation p.E1486Q 0.28 deleterious(0.04) probably_damaging(0.976) TCGA-DK-A3WW-01 11 117988106 117988106 G A TMPRSS4 Silent p.P413P 0.23 TCGA-DK-A3WW-01 11 118828957 118828957 G C UPK2 3'UTR 0.20 TCGA-DK-A3WW-01 11 1217699 1217699 C T MUC5AC Intron 0.25 TCGA-DK-A3WW-01 11 12245000 12245000 C T MICAL2 Missense_Mutation p.L498F 0.19 deleterious(0.01) benign(0.01) TCGA-DK-A3WW-01 11 123597521 123597521 C T ZNF202 Silent p.V377V 0.17 TCGA-DK-A3WW-01 11 124766975 124766975 C G ROBO4 Missense_Mutation p.D85H 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-DK-A3WW-01 11 124956256 124956256 C G SLC37A2 Intron 0.16 TCGA-DK-A3WW-01 11 126137185 126137185 C G SRPR Missense_Mutation p.K137N 0.27 deleterious(0) probably_damaging(0.948) TCGA-DK-A3WW-01 11 126142911 126142911 G A FOXRED1 Silent p.Q118Q 0.23 TCGA-DK-A3WW-01 11 129744722 129744722 G A NFRKB Silent p.I673I 0.23 TCGA-DK-A3WW-01 11 134252640 134252640 G A B3GAT1 Silent p.L294L 0.17 TCGA-DK-A3WW-01 11 13427306 13427306 C G BTBD10 Missense_Mutation p.Q302H 0.27 deleterious(0.04) benign(0.011) TCGA-DK-A3WW-01 11 17099182 17099182 G A RPS13 Missense_Mutation p.R3C 0.22 deleterious(0.05) benign(0.075) TCGA-DK-A3WW-01 11 20078127 20078127 C T NAV2 Missense_Mutation p.S1651L 0.17 tolerated(0.32) benign(0.001) TCGA-DK-A3WW-01 11 22297645 22297645 G C ANO5 Missense_Mutation p.R807T 0.27 deleterious(0) probably_damaging(0.917) TCGA-DK-A3WW-01 11 26586972 26586972 G C MUC15 Missense_Mutation p.S172C 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-DK-A3WW-01 11 2929501 2929501 C T SLC22A18 Silent p.F61F 0.32 TCGA-DK-A3WW-01 11 2946264 2946264 C T SLC22A18 Missense_Mutation p.S371F 0.24 deleterious(0) probably_damaging(0.981) TCGA-DK-A3WW-01 11 31648699 31648699 G A ELP4 Silent p.Q232Q 0.24 TCGA-DK-A3WW-01 11 33772145 33772145 G A FBXO3 Missense_Mutation p.S291L 0.21 tolerated(0.15) benign(0.017) TCGA-DK-A3WW-01 11 36614675 36614675 C G RAG2 Missense_Mutation p.L348F 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-DK-A3WW-01 11 43852563 43852563 G A HSD17B12 Intron 0.26 TCGA-DK-A3WW-01 11 46419000 46419000 C T AMBRA1 Silent p.%3D 0.23 TCGA-DK-A3WW-01 11 4661773 4661773 C G OR51D1 Missense_Mutation p.F251L 0.25 tolerated(1) benign(0.387) TCGA-DK-A3WW-01 11 46801788 46801788 C T CKAP5 Missense_Mutation p.E797K 0.18 deleterious(0) possibly_damaging(0.682) TCGA-DK-A3WW-01 11 46907941 46907941 C T LRP4 Missense_Mutation p.V787M 0.28 deleterious(0.03) benign(0.104) TCGA-DK-A3WW-01 11 47073976 47073976 C T C11orf49 Nonsense_Mutation p.R63* 0.27 TCGA-DK-A3WW-01 11 47259519 47259519 G A DDB2 Silent p.Q385Q 0.19 TCGA-DK-A3WW-01 11 47259526 47259526 G A DDB2 Missense_Mutation p.D388N 0.20 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 11 47372904 47372904 C T MYBPC3 Missense_Mutation p.E60K 0.12 deleterious_low_confidence(0.04) benign(0.047) TCGA-DK-A3WW-01 11 48161324 48161324 C T PTPRJ Silent p.I813I 0.24 TCGA-DK-A3WW-01 11 5142389 5142389 G A OR52A4 RNA 0.24 TCGA-DK-A3WW-01 11 55032749 55032749 C T TRIM48 Missense_Mutation p.H140Y 0.42 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A3WW-01 11 5510634 5510634 C T OR52D1 Missense_Mutation p.S233F 0.19 deleterious(0) benign(0.048) TCGA-DK-A3WW-01 11 5530516 5530516 G A UBQLN3 Silent p.I91I 0.22 TCGA-DK-A3WW-01 11 55321997 55321997 A T OR4C15 Missense_Mutation p.N72I 0.26 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-DK-A3WW-01 11 55340229 55340229 A C OR4C16 Missense_Mutation p.Y209S 0.27 deleterious(0) benign(0.069) TCGA-DK-A3WW-01 11 55861684 55861684 C G OR8I2 Missense_Mutation p.L301V 0.21 tolerated(0.52) benign(0.002) TCGA-DK-A3WW-01 11 55890712 55890712 C G OR8H3 Silent p.L288L 0.23 TCGA-DK-A3WW-01 11 56086160 56086160 C T OR8K3 Silent p.I126I 0.23 TCGA-DK-A3WW-01 11 57004286 57004286 C T APLNR Missense_Mutation p.D65N 0.26 deleterious(0.02) probably_damaging(0.988) TCGA-DK-A3WW-01 11 57310770 57310770 G A SMTNL1 Missense_Mutation p.D237N 0.32 deleterious(0.01) benign(0.105) TCGA-DK-A3WW-01 11 57310839 57310839 G A SMTNL1 Missense_Mutation p.E260K 0.18 tolerated(0.25) benign(0.001) TCGA-DK-A3WW-01 11 57373870 57373870 C T SERPING1 Intron 0.16 TCGA-DK-A3WW-01 11 57373936 57373936 C T SERPING1 Silent p.F315F 0.23 TCGA-DK-A3WW-01 11 58477493 58477493 C T GLYAT Missense_Mutation p.E213K 0.19 deleterious(0.04) benign(0.327) TCGA-DK-A3WW-01 11 5968681 5968681 C T OR56A3 Silent p.L35L 0.30 TCGA-DK-A3WW-01 11 60699265 60699265 C G TMEM132A Missense_Mutation p.P375R 0.23 deleterious(0) probably_damaging(0.951) TCGA-DK-A3WW-01 11 61058812 61058812 G A VWCE Silent p.F73F 0.13 TCGA-DK-A3WW-01 11 61672247 61672247 G A RAB3IL1 Silent p.C255C 0.14 TCGA-DK-A3WW-01 11 62293224 62293224 C G AHNAK Missense_Mutation p.D2889H 0.23 probably_damaging(0.993) TCGA-DK-A3WW-01 11 62293417 62293417 C G AHNAK Missense_Mutation p.K2824N 0.22 probably_damaging(0.993) TCGA-DK-A3WW-01 11 62294428 62294428 C T AHNAK Missense_Mutation p.M2487I 0.31 benign(0.043) TCGA-DK-A3WW-01 11 62397394 62397394 C T GANAB Missense_Mutation p.M565I 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 11 62416061 62416061 G A INTS5 Silent p.L497L 0.24 TCGA-DK-A3WW-01 11 62439326 62439326 G A C11orf83 Missense_Mutation p.E37K 0.26 tolerated(0.18) possibly_damaging(0.486) TCGA-DK-A3WW-01 11 624652 624652 C T CDHR5 Missense_Mutation p.E56K 0.21 tolerated(0.11) benign(0.156) TCGA-DK-A3WW-01 11 62483065 62483065 G A HNRNPUL2 Silent p.F690F 0.23 TCGA-DK-A3WW-01 11 62563952 62563952 G A NXF1 Silent p.F422F 0.20 TCGA-DK-A3WW-01 11 62566198 62566198 C A NXF1 Intron 0.44 TCGA-DK-A3WW-01 11 62985102 62985102 G T SLC22A25 Missense_Mutation p.F204L 0.18 deleterious(0.02) benign(0.327) TCGA-DK-A3WW-01 11 63520033 63520033 G A RTN3 Missense_Mutation p.M931I 0.24 deleterious(0.03) benign(0.063) TCGA-DK-A3WW-01 11 63671525 63671525 C T MARK2 Missense_Mutation p.R528C 0.21 deleterious(0) possibly_damaging(0.644) TCGA-DK-A3WW-01 11 63978565 63978565 G A FERMT3 Missense_Mutation p.E146K 0.29 tolerated(0.27) benign(0.046) TCGA-DK-A3WW-01 11 64514790 64514790 G A PYGM Missense_Mutation p.R740W 0.32 deleterious(0) probably_damaging(0.936) TCGA-DK-A3WW-01 11 64821987 64821987 G A NAALADL1 Missense_Mutation p.S276F 0.23 deleterious(0.04) benign(0.017) TCGA-DK-A3WW-01 11 64985056 64985056 C T SLC22A20 RNA 0.29 TCGA-DK-A3WW-01 11 65618826 65618826 C T SNX32 Missense_Mutation p.S246L 0.27 deleterious(0.05) benign(0.112) TCGA-DK-A3WW-01 11 65793777 65793777 G C CATSPER1 Missense_Mutation p.S25C 0.20 deleterious(0.01) possibly_damaging(0.867) TCGA-DK-A3WW-01 11 6661080 6661080 C T DCHS1 Missense_Mutation p.E589K 0.14 deleterious(0) probably_damaging(0.947) TCGA-DK-A3WW-01 11 66627266 66627266 C G LRFN4 Missense_Mutation p.S503W 0.13 deleterious(0.02) possibly_damaging(0.527) TCGA-DK-A3WW-01 11 67379873 67379873 G A NDUFV1 Missense_Mutation p.E447K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-DK-A3WW-01 11 67402490 67402490 C T TBX10 Silent p.E84E 0.35 TCGA-DK-A3WW-01 11 67934431 67934431 C G SUV420H1 Intron 0.37 TCGA-DK-A3WW-01 11 69063227 69063257 GGTGACCGGGAGAGAAACAAGGGAGACAAGG - MYEOV Frame_Shift_Del p.G104Vfs*106 0.29 TCGA-DK-A3WW-01 11 6953470 6953470 G A ZNF215 5'UTR 0.27 TCGA-DK-A3WW-01 11 7110619 7110619 G A RBMXL2 Missense_Mutation p.E90K 0.23 tolerated(0.13) benign(0.087) TCGA-DK-A3WW-01 11 72294523 72294523 G A PDE2A Missense_Mutation p.R563C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 11 72418254 72418254 G C ARAP1 Missense_Mutation p.I563M 0.15 deleterious(0) probably_damaging(0.961) TCGA-DK-A3WW-01 11 76063335 76063335 G C PRKRIR Missense_Mutation p.H287D 0.17 tolerated(0.5) benign(0.01) TCGA-DK-A3WW-01 11 76063340 76063340 T C PRKRIR Missense_Mutation p.E285G 0.15 deleterious(0.03) benign(0.371) TCGA-DK-A3WW-01 11 76063502 76063502 G C PRKRIR Nonsense_Mutation p.S231* 0.23 TCGA-DK-A3WW-01 11 78177018 78177018 C T NARS2 Silent p.V356V 0.26 TCGA-DK-A3WW-01 11 82644076 82644076 G A C11orf82 Missense_Mutation p.E566K 0.41 tolerated(0.14) possibly_damaging(0.907) TCGA-DK-A3WW-01 11 8284997 8284997 C A LMO1 5'UTR 0.36 TCGA-DK-A3WW-01 11 83173066 83173066 C T DLG2 Missense_Mutation p.E934K 0.20 deleterious(0) probably_damaging(0.975) TCGA-DK-A3WW-01 11 83195218 83195218 G C DLG2 Missense_Mutation p.F749L 0.17 tolerated(0.07) possibly_damaging(0.737) TCGA-DK-A3WW-01 11 85396921 85396921 C G CCDC89 Missense_Mutation p.D85H 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 11 86133825 86133825 G A CCDC81 3'UTR 0.21 TCGA-DK-A3WW-01 11 8959695 8959695 C T ASCL3 Missense_Mutation p.R5K 0.26 tolerated(0.37) benign(0.007) TCGA-DK-A3WW-01 11 9111371 9111371 C G SCUBE2 Missense_Mutation p.D47H 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 11 93118581 93118581 C G CCDC67 Silent p.L269L 0.18 TCGA-DK-A3WW-01 11 95590723 95590723 C T MTMR2 Missense_Mutation p.R216K 0.16 tolerated(1) benign(0) TCGA-DK-A3WW-01 11 95826490 95826490 C G MAML2 Missense_Mutation p.M235I 0.20 benign(0.009) TCGA-DK-A3WW-01 12 1005785 1005785 G C WNK1 Missense_Mutation p.Q2044H 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A3WW-01 12 100612202 100612202 G A ACTR6 Missense_Mutation p.E254K 0.11 tolerated(0.28) benign(0.179) TCGA-DK-A3WW-01 12 10145715 10145715 C G CLEC1B 3'UTR 0.24 TCGA-DK-A3WW-01 12 101684562 101684562 C G UTP20 Missense_Mutation p.Q263E 0.23 tolerated(0.97) benign(0.001) TCGA-DK-A3WW-01 12 104377149 104377149 G C TDG Missense_Mutation p.K258N 0.12 tolerated(0.07) benign(0.093) TCGA-DK-A3WW-01 12 104513476 104513476 C G NFYB 3'UTR 0.21 TCGA-DK-A3WW-01 12 104719163 104719163 C T TXNRD1 Nonsense_Mutation p.Q422* 0.18 TCGA-DK-A3WW-01 12 106729964 106729964 C G TCP11L2 Missense_Mutation p.A372G 0.22 tolerated(0.27) benign(0.063) TCGA-DK-A3WW-01 12 106770206 106770206 G C POLR3B Silent p.L158L 0.21 TCGA-DK-A3WW-01 12 109927815 109927815 T C UBE3B Intron 0.33 TCGA-DK-A3WW-01 12 110933819 110933819 C T VPS29 Missense_Mutation p.E69K 0.31 deleterious(0.03) benign(0.031) TCGA-DK-A3WW-01 12 111801049 111801049 G C FAM109A Missense_Mutation p.I74M 0.17 deleterious(0.03) possibly_damaging(0.548) TCGA-DK-A3WW-01 12 112081954 112081954 C G BRAP 3'UTR 0.22 TCGA-DK-A3WW-01 12 11244734 11244734 G A TAS2R43 Missense_Mutation p.S32F 0.17 tolerated(0.5) benign(0.003) TCGA-DK-A3WW-01 12 113304639 113304639 G A RPH3A Silent p.Q146Q 0.32 TCGA-DK-A3WW-01 12 113599704 113599704 C T DDX54 Missense_Mutation p.R765Q 0.18 tolerated(0.3) benign(0.009) TCGA-DK-A3WW-01 12 116972770 116972770 G A LINC00173 RNA 0.28 TCGA-DK-A3WW-01 12 12022357 12022357 G T ETV6 Splice_Site p.X155_splice 0.23 TCGA-DK-A3WW-01 12 120575013 120575013 C T GCN1L1 Silent p.K2258K 0.24 TCGA-DK-A3WW-01 12 120907289 120907289 C T SRSF9 Missense_Mutation p.E42K 0.23 tolerated(0.2) benign(0.005) TCGA-DK-A3WW-01 12 121002980 121002980 G C RNF10 Missense_Mutation p.E591Q 0.26 tolerated(0.18) benign(0.007) TCGA-DK-A3WW-01 12 121098025 121098025 G C CABP1 Missense_Mutation p.D238H 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 12 121132759 121132759 G A MLEC Missense_Mutation p.E183K 0.27 deleterious(0.02) possibly_damaging(0.69) TCGA-DK-A3WW-01 12 121465473 121465473 C T OASL Missense_Mutation p.E269K 0.35 tolerated(0.11) benign(0.026) TCGA-DK-A3WW-01 12 121757561 121757561 G A ANAPC5 Missense_Mutation p.H526Y 0.36 tolerated(0.1) benign(0.432) TCGA-DK-A3WW-01 12 122441644 122441644 G A WDR66 Missense_Mutation p.E1142K 0.21 deleterious(0.02) benign(0.211) TCGA-DK-A3WW-01 12 122983381 122983381 G C ZCCHC8 Missense_Mutation p.R79G 0.29 deleterious(0.01) benign(0.015) TCGA-DK-A3WW-01 12 123424766 123424766 C T ABCB9 Silent p.K545K 0.18 TCGA-DK-A3WW-01 12 123821011 123821011 C T SBNO1 Missense_Mutation p.E227K 0.15 deleterious(0.01) benign(0.427) TCGA-DK-A3WW-01 12 123889520 123889520 C T SETD8 Silent p.L249L 0.20 TCGA-DK-A3WW-01 12 124197093 124197093 C T ATP6V0A2 5'UTR 0.33 TCGA-DK-A3WW-01 12 124293452 124293452 C T DNAH10 Silent p.I914I 0.22 TCGA-DK-A3WW-01 12 132502203 132502203 G A EP400 Silent p.A1349A 0.22 TCGA-DK-A3WW-01 12 13769390 13769390 C T GRIN2B Missense_Mutation p.E443K 0.24 tolerated(0.38) benign(0.007) TCGA-DK-A3WW-01 12 15068615 15068615 G A ERP27 Silent p.L194L 0.20 TCGA-DK-A3WW-01 12 15095356 15095356 G A ARHGDIB 3'UTR 0.18 TCGA-DK-A3WW-01 12 2113469 2113469 G T DCP1B Missense_Mutation p.F43L 0.18 deleterious(0) possibly_damaging(0.734) TCGA-DK-A3WW-01 12 2224703 2224703 C G CACNA1C Silent p.V121V 0.21 TCGA-DK-A3WW-01 12 27066474 27066474 C T ASUN Missense_Mutation p.G574E 0.22 tolerated(0.17) possibly_damaging(0.783) TCGA-DK-A3WW-01 12 27543128 27543128 C A ARNTL2 Missense_Mutation p.S292Y 0.22 deleterious(0.02) possibly_damaging(0.707) TCGA-DK-A3WW-01 12 27553558 27553558 G A ARNTL2 Silent p.K337K 0.32 TCGA-DK-A3WW-01 12 28123192 28123192 G C PTHLH 5'UTR 0.21 TCGA-DK-A3WW-01 12 40037702 40037702 G C C12orf40 Missense_Mutation p.C62S 0.14 tolerated(0.27) possibly_damaging(0.599) TCGA-DK-A3WW-01 12 43826205 43826205 G A ADAMTS20 Missense_Mutation p.R1000C 0.19 tolerated(0.05) probably_damaging(0.968) TCGA-DK-A3WW-01 12 48962944 48962944 G C LALBA Silent p.L71L 0.20 TCGA-DK-A3WW-01 12 49087241 49087241 C G CCNT1 Missense_Mutation p.D586H 0.24 tolerated_low_confidence(0.28) possibly_damaging(0.907) TCGA-DK-A3WW-01 12 49164698 49164698 G A ADCY6 Missense_Mutation p.T1036I 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 12 49334843 49334843 C T ARF3 Silent p.L12L 0.22 TCGA-DK-A3WW-01 12 49406883 49406883 G C PRKAG1 Nonsense_Mutation p.S7* 0.17 TCGA-DK-A3WW-01 12 49427438 49427438 G A KMT2D Nonsense_Mutation p.Q3684* 0.23 TCGA-DK-A3WW-01 12 49485101 49485101 C T DHH Silent p.V125V 0.28 TCGA-DK-A3WW-01 12 49689307 49689307 C T PRPH Silent p.F108F 0.40 TCGA-DK-A3WW-01 12 49742589 49742589 C T DNAJC22 5'UTR 0.31 TCGA-DK-A3WW-01 12 49952459 49952459 G C MCRS1 Missense_Mutation p.I465M 0.20 deleterious(0.02) probably_damaging(0.99) TCGA-DK-A3WW-01 12 49981317 49981317 G C FAM186B 3'UTR 0.17 TCGA-DK-A3WW-01 12 50035705 50035705 C T PRPF40B Silent p.C594C 0.19 TCGA-DK-A3WW-01 12 50453669 50453669 G A ASIC1 Missense_Mutation p.D164N 0.23 tolerated(0.14) benign(0.052) TCGA-DK-A3WW-01 12 51590642 51590642 G A POU6F1 5'UTR 0.10 TCGA-DK-A3WW-01 12 51590768 51590768 G C POU6F1 Intron 0.40 TCGA-DK-A3WW-01 12 51773340 51773340 G C GALNT6 Missense_Mutation p.P76A 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A3WW-01 12 52865855 52865855 C T KRT6C Silent p.K250K 0.21 TCGA-DK-A3WW-01 12 53858606 53858606 C T PCBP2 Silent p.L218L 0.26 TCGA-DK-A3WW-01 12 54756722 54756722 C T GPR84 Missense_Mutation p.R305K 0.25 tolerated(0.75) benign(0.016) TCGA-DK-A3WW-01 12 549890 549890 G A CCDC77 Missense_Mutation p.M383I 0.21 tolerated(0.14) benign(0.001) TCGA-DK-A3WW-01 12 55641610 55641610 C G OR6C74 Missense_Mutation p.S180C 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.853) TCGA-DK-A3WW-01 12 56349424 56349424 G C PMEL Nonsense_Mutation p.S529* 0.15 TCGA-DK-A3WW-01 12 56349603 56349603 C T PMEL Missense_Mutation p.E506K 0.20 tolerated(0.19) benign(0.015) TCGA-DK-A3WW-01 12 56708530 56708530 G A CNPY2 Intron 0.30 TCGA-DK-A3WW-01 12 56722102 56722102 C T PAN2 Missense_Mutation p.D165N 0.28 tolerated(0.43) benign(0.002) TCGA-DK-A3WW-01 12 57181045 57181045 C T HSD17B6 Silent p.F291F 0.17 TCGA-DK-A3WW-01 12 62104006 62104006 C T FAM19A2 3'UTR 0.43 TCGA-DK-A3WW-01 12 6347052 6347052 G C CD9 3'UTR 0.24 TCGA-DK-A3WW-01 12 6450939 6450939 C T TNFRSF1A Intron 0.18 TCGA-DK-A3WW-01 12 66718772 66718772 G A HELB Missense_Mutation p.D846N 0.24 deleterious(0.02) possibly_damaging(0.651) TCGA-DK-A3WW-01 12 6933172 6933172 C G GPR162 Silent p.L36L 0.31 TCGA-DK-A3WW-01 12 78569172 78569172 G C NAV3 Missense_Mutation p.D1690H 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-DK-A3WW-01 12 86373294 86373294 C G MGAT4C Missense_Mutation p.D404H 0.33 deleterious(0) probably_damaging(0.98) TCGA-DK-A3WW-01 12 89916498 89916498 G C POC1B-GALNT4 3'UTR 0.29 TCGA-DK-A3WW-01 12 97157951 97157951 C T C12orf55 Missense_Mutation p.S2688F 0.15 deleterious(0.01) benign(0.004) TCGA-DK-A3WW-01 12 98849480 98849480 G A SLC9A7P1 RNA 0.11 TCGA-DK-A3WW-01 12 98993491 98993491 C T SLC25A3 Intron 0.23 TCGA-DK-A3WW-01 13 100181787 100181787 G A TM9SF2 Missense_Mutation p.E134K 0.40 tolerated(0.81) benign(0.232) TCGA-DK-A3WW-01 13 101997647 101997647 C G NALCN Missense_Mutation p.E257Q 0.31 tolerated(0.59) benign(0.261) TCGA-DK-A3WW-01 13 19747925 19747925 G C TUBA3C 3'UTR 0.18 TCGA-DK-A3WW-01 13 19748188 19748188 G A TUBA3C Missense_Mutation p.R390C 0.19 deleterious_low_confidence(0.01) benign(0.042) TCGA-DK-A3WW-01 13 20413042 20413042 G A ZMYM5 Missense_Mutation p.R224C 0.28 deleterious(0) possibly_damaging(0.835) TCGA-DK-A3WW-01 13 21331662 21331662 C G N6AMT2 Missense_Mutation p.E26Q 0.25 deleterious(0.03) possibly_damaging(0.765) TCGA-DK-A3WW-01 13 23913064 23913064 G C SACS Missense_Mutation p.Q1651E 0.19 probably_damaging(0.966) TCGA-DK-A3WW-01 13 24471170 24471170 G A C1QTNF9B 5'UTR 0.17 TCGA-DK-A3WW-01 13 25457243 25457243 G C CENPJ 3'UTR 0.21 TCGA-DK-A3WW-01 13 28367224 28367224 C T GSX1 Missense_Mutation p.H133Y 0.21 deleterious(0) benign(0.444) TCGA-DK-A3WW-01 13 37678589 37678589 C G CSNK1A1L Missense_Mutation p.E269Q 0.25 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-DK-A3WW-01 13 42335283 42335283 C G VWA8 Missense_Mutation p.E803Q 0.16 tolerated(0.19) possibly_damaging(0.633) TCGA-DK-A3WW-01 13 44971472 44971472 C G SERP2 3'UTR 0.27 TCGA-DK-A3WW-01 13 45912831 45912831 C T TPT1 Missense_Mutation p.M160I 0.24 tolerated(0.11) benign(0.04) TCGA-DK-A3WW-01 13 45914250 45914250 C G TPT1 Missense_Mutation p.E58Q 0.21 tolerated(0.11) benign(0.388) TCGA-DK-A3WW-01 13 46658451 46658451 C T CPB2 Missense_Mutation p.D60N 0.30 tolerated(0.17) benign(0.009) TCGA-DK-A3WW-01 13 47356852 47356852 C T ESD Missense_Mutation p.E111K 0.19 tolerated(0.06) benign(0.023) TCGA-DK-A3WW-01 13 49710506 49710506 G C FNDC3A Missense_Mutation p.E177Q 0.22 deleterious(0.02) possibly_damaging(0.653) TCGA-DK-A3WW-01 13 50590174 50590174 C G KCNRG Missense_Mutation p.S182C 0.24 deleterious(0.02) benign(0.048) TCGA-DK-A3WW-01 13 58207697 58207697 C G PCDH17 Silent p.V339V 0.28 TCGA-DK-A3WW-01 13 60584692 60584692 C A DIAPH3 Missense_Mutation p.V295L 0.21 tolerated(0.44) benign(0.261) TCGA-DK-A3WW-01 13 70681477 70681477 G A KLHL1 Missense_Mutation p.L119F 0.28 tolerated_low_confidence(0.71) benign(0.06) TCGA-DK-A3WW-01 13 73321094 73321094 G C BORA Missense_Mutation p.D443H 0.22 deleterious(0) probably_damaging(0.952) TCGA-DK-A3WW-01 13 76408454 76408454 G A LMO7 Missense_Mutation p.E820K 0.29 tolerated(0.26) benign(0.248) TCGA-DK-A3WW-01 13 77736073 77736073 C G MYCBP2 Missense_Mutation p.D2151H 0.15 probably_damaging(0.997) TCGA-DK-A3WW-01 13 96086023 96086023 C T CLDN10 5'UTR 0.24 TCGA-DK-A3WW-01 13 99037049 99037049 C T FARP1 Nonsense_Mutation p.Q188* 0.16 TCGA-DK-A3WW-01 13 99520266 99520266 C A DOCK9 Splice_Site p.X1031_splice 0.20 TCGA-DK-A3WW-01 14 100405533 100405533 G T EML1 Splice_Site p.X750_splice 0.17 TCGA-DK-A3WW-01 14 100405640 100405640 C G EML1 Missense_Mutation p.F785L 0.21 deleterious(0) benign(0.442) TCGA-DK-A3WW-01 14 101005143 101005143 G A BEGAIN Silent p.A315A 0.35 TCGA-DK-A3WW-01 14 101005461 101005461 G A BEGAIN Silent p.F209F 0.25 TCGA-DK-A3WW-01 14 105397102 105397102 C T PLD4 Silent p.I247I 0.24 TCGA-DK-A3WW-01 14 105410848 105410848 G T AHNAK2 Nonsense_Mutation p.S3647* 0.22 TCGA-DK-A3WW-01 14 105415178 105415178 G A AHNAK2 Nonsense_Mutation p.Q2204* 0.34 TCGA-DK-A3WW-01 14 105415185 105415185 G A AHNAK2 Silent p.L2201L 0.36 TCGA-DK-A3WW-01 14 20344666 20344666 G C OR4K2 Missense_Mutation p.K80N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 14 20345153 20345153 C T OR4K2 Missense_Mutation p.H243Y 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 14 21822578 21822578 C T SUPT16H Missense_Mutation p.E928K 0.13 deleterious(0.01) benign(0.04) TCGA-DK-A3WW-01 14 23524350 23524350 G A CDH24 Silent p.I138I 0.21 TCGA-DK-A3WW-01 14 23548985 23548985 G C ACIN1 Missense_Mutation p.S578C 0.16 possibly_damaging(0.781) TCGA-DK-A3WW-01 14 23549444 23549444 G C ACIN1 Missense_Mutation p.S425C 0.23 possibly_damaging(0.832) TCGA-DK-A3WW-01 14 23863393 23863393 C G MYH6 Missense_Mutation p.E857Q 0.23 deleterious(0.01) possibly_damaging(0.873) TCGA-DK-A3WW-01 14 23865621 23865621 G A MYH6 Silent p.F767F 0.27 TCGA-DK-A3WW-01 14 23899054 23899054 G A MYH7 Silent p.I356I 0.24 TCGA-DK-A3WW-01 14 24035662 24035662 C G AP1G2 Intron 0.24 TCGA-DK-A3WW-01 14 24424331 24424331 G A DHRS4 Silent p.A72A 0.24 TCGA-DK-A3WW-01 14 24800506 24800506 C G ADCY4 Missense_Mutation p.E242D 0.25 tolerated(0.09) probably_damaging(0.985) TCGA-DK-A3WW-01 14 24801006 24801006 C T ADCY4 Silent p.E219E 0.29 TCGA-DK-A3WW-01 14 24880396 24880396 G A NYNRIN Silent p.K843K 0.20 TCGA-DK-A3WW-01 14 31602831 31602831 C A HECTD1 Missense_Mutation p.W1210L 0.17 deleterious(0.01) possibly_damaging(0.824) TCGA-DK-A3WW-01 14 31602844 31602844 C G HECTD1 Missense_Mutation p.E1206Q 0.23 deleterious(0.05) benign(0.425) TCGA-DK-A3WW-01 14 31849763 31849763 C A HEATR5A Missense_Mutation p.D247Y 0.24 deleterious(0.01) benign(0.105) TCGA-DK-A3WW-01 14 37777576 37777576 G A MIPOL1 Missense_Mutation p.R227K 0.29 deleterious(0.02) probably_damaging(0.93) TCGA-DK-A3WW-01 14 38679239 38679239 C T SSTR1 Silent p.P215P 0.23 TCGA-DK-A3WW-01 14 50074583 50074583 G A LRR1 Missense_Mutation p.E250K 0.16 tolerated(0.22) benign(0.06) TCGA-DK-A3WW-01 14 50912794 50912794 C T MAP4K5 Intron 0.54 TCGA-DK-A3WW-01 14 55310749 55310749 G A GCH1 Missense_Mutation p.L247F 0.27 deleterious(0.01) possibly_damaging(0.719) TCGA-DK-A3WW-01 14 55852644 55852644 G A ATG14 Nonsense_Mutation p.R194* 0.18 TCGA-DK-A3WW-01 14 60193729 60193729 G A RTN1 Missense_Mutation p.S558L 0.19 deleterious(0.03) benign(0) TCGA-DK-A3WW-01 14 60750112 60750112 G A PPM1A Missense_Mutation p.D304N 0.30 deleterious(0.03) probably_damaging(0.988) TCGA-DK-A3WW-01 14 62463153 62463153 C G SYT16 Missense_Mutation p.S139C 0.24 tolerated(0.11) possibly_damaging(0.711) TCGA-DK-A3WW-01 14 64529564 64529564 C T SYNE2 Missense_Mutation p.S3388L 0.27 benign(0.006) TCGA-DK-A3WW-01 14 64542728 64542728 C G SYNE2 Missense_Mutation p.I3644M 0.29 benign(0.319) TCGA-DK-A3WW-01 14 65521359 65521359 C T FNTB Silent p.S378S 0.22 TCGA-DK-A3WW-01 14 68196080 68196080 G C RDH12 Silent p.L277L 0.24 TCGA-DK-A3WW-01 14 68217796 68217796 G C ZFYVE26 Missense_Mutation p.I2463M 0.27 deleterious(0) probably_damaging(0.978) TCGA-DK-A3WW-01 14 69262700 69262700 G A ZFP36L1 5'Flank 0.14 TCGA-DK-A3WW-01 14 70989717 70989717 G A ADAM20 Silent p.L636L 0.30 TCGA-DK-A3WW-01 14 74203808 74203808 C G ELMSAN1 Missense_Mutation p.D548H 0.31 tolerated(0.1) possibly_damaging(0.535) TCGA-DK-A3WW-01 14 74203900 74203900 C T ELMSAN1 Missense_Mutation p.R517Q 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3WW-01 14 74428472 74428472 G C COQ6 Missense_Mutation p.E415Q 0.25 tolerated(0.18) benign(0.206) TCGA-DK-A3WW-01 14 74824374 74824374 C G VRTN Missense_Mutation p.F296L 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A3WW-01 14 75513113 75513113 C T MLH3 Silent p.L1082L 0.23 TCGA-DK-A3WW-01 14 75514904 75514904 C T MLH3 Silent p.E485E 0.25 TCGA-DK-A3WW-01 14 75563842 75563842 C T NEK9 Missense_Mutation p.D712N 0.18 tolerated(0.1) possibly_damaging(0.835) TCGA-DK-A3WW-01 14 76045555 76045555 G A FLVCR2 Silent p.V80V 0.24 TCGA-DK-A3WW-01 14 76638345 76638345 C G GPATCH2L Missense_Mutation p.S296C 0.27 deleterious(0) probably_damaging(0.94) TCGA-DK-A3WW-01 14 77493965 77493965 C T IRF2BPL Silent p.L57L 0.31 TCGA-DK-A3WW-01 14 77706018 77706018 C T TMEM63C Silent p.I293I 0.28 TCGA-DK-A3WW-01 14 77746776 77746776 C T POMT2 Missense_Mutation p.E562K 0.31 deleterious(0) benign(0.167) TCGA-DK-A3WW-01 14 78063675 78063675 C T SPTLC2 Missense_Mutation p.E61K 0.12 deleterious(0.01) benign(0.259) TCGA-DK-A3WW-01 14 88945337 88945337 G C PTPN21 Missense_Mutation p.S813C 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-DK-A3WW-01 14 89061436 89061436 C T ZC3H14 Intron 0.14 TCGA-DK-A3WW-01 14 89131686 89131686 G A EML5 Missense_Mutation p.S1091L 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-DK-A3WW-01 14 91282539 91282539 G A TTC7B Missense_Mutation p.S34L 0.20 tolerated(0.33) benign(0.002) TCGA-DK-A3WW-01 14 91372534 91372534 G A RPS6KA5 Missense_Mutation p.P306S 0.14 tolerated(0.18) benign(0.007) TCGA-DK-A3WW-01 14 92336478 92336478 C T FBLN5 3'UTR 0.17 TCGA-DK-A3WW-01 14 92560118 92560118 C G ATXN3 Missense_Mutation p.E98Q 0.19 deleterious(0.03) benign(0.122) TCGA-DK-A3WW-01 14 93404796 93404796 C G ITPK1 3'UTR 0.10 TCGA-DK-A3WW-01 14 94044269 94044269 C T UNC79 Missense_Mutation p.R588W 0.18 tolerated(0.07) possibly_damaging(0.685) TCGA-DK-A3WW-01 14 94953635 94953635 C G SERPINA12 3'UTR 0.16 TCGA-DK-A3WW-01 15 101170300 101170300 G C ASB7 Intron 0.30 TCGA-DK-A3WW-01 15 23889330 23889330 C T MAGEL2 Missense_Mutation p.R584Q 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A3WW-01 15 25429171 25429171 G A SNORD115-10 5'Flank 0.50 TCGA-DK-A3WW-01 15 29091372 29091372 C T GOLGA6L7P RNA 0.11 TCGA-DK-A3WW-01 15 29367150 29367150 G A APBA2 Silent p.R326R 0.29 TCGA-DK-A3WW-01 15 30659650 30659650 C T CHRFAM7A Missense_Mutation p.D231N 0.14 tolerated(0.49) benign(0.378) TCGA-DK-A3WW-01 15 31239356 31239356 G A MTMR10 Missense_Mutation p.H509Y 0.21 tolerated(0.13) possibly_damaging(0.863) TCGA-DK-A3WW-01 15 31360134 31360134 G A TRPM1 Silent p.I164I 0.22 TCGA-DK-A3WW-01 15 34061318 34061318 G A RYR3 Missense_Mutation p.D2921N 0.26 benign(0.117) TCGA-DK-A3WW-01 15 34393988 34393988 G A EMC7 Missense_Mutation p.S18L 0.28 tolerated_low_confidence(0.65) benign(0.003) TCGA-DK-A3WW-01 15 39544555 39544555 G C C15orf54 Missense_Mutation p.M73I 0.30 tolerated_low_confidence(0.19) benign(0.003) TCGA-DK-A3WW-01 15 40544648 40544648 C T C15orf56 Silent p.P108P 0.13 TCGA-DK-A3WW-01 15 40655912 40655912 C T DISP2 Missense_Mutation p.S69F 0.25 tolerated_low_confidence(0.07) benign(0.383) TCGA-DK-A3WW-01 15 43294805 43294805 G A UBR1 Silent p.L1203L 0.16 TCGA-DK-A3WW-01 15 43888690 43888690 G A CKMT1B Missense_Mutation p.M279I 0.21 tolerated(0.14) benign(0.303) TCGA-DK-A3WW-01 15 48623792 48623792 G C DUT Missense_Mutation p.R27P 0.24 tolerated_low_confidence(0.11) benign(0.222) TCGA-DK-A3WW-01 15 50769684 50769684 G A USP8 Silent p.K402K 0.19 TCGA-DK-A3WW-01 15 51783938 51783938 G C DMXL2 Missense_Mutation p.S1597C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A3WW-01 15 52416714 52416714 C T GNB5 Missense_Mutation p.D378N 0.21 deleterious(0.04) probably_damaging(1) TCGA-DK-A3WW-01 15 59466040 59466040 C G MYO1E Missense_Mutation p.G747R 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 15 59910809 59910809 G A GCNT3 Silent p.L124L 0.25 TCGA-DK-A3WW-01 15 59911184 59911184 G A GCNT3 Silent p.R249R 0.29 TCGA-DK-A3WW-01 15 60789729 60789729 C T RORA Silent p.V532V 0.18 TCGA-DK-A3WW-01 15 62160096 62160096 G A VPS13C Intron 0.17 TCGA-DK-A3WW-01 15 62539300 62539300 C G AC126323.1 5'Flank 0.36 TCGA-DK-A3WW-01 15 63916468 63916468 G T HERC1 Missense_Mutation p.P4445H 0.28 benign(0.017) TCGA-DK-A3WW-01 15 65497670 65497670 C T CILP Missense_Mutation p.E187K 0.24 deleterious(0.02) possibly_damaging(0.559) TCGA-DK-A3WW-01 15 65847289 65847289 G A PTPLAD1 Silent p.V65V 0.25 TCGA-DK-A3WW-01 15 68503654 68503654 G A CLN6 Silent p.I163I 0.21 TCGA-DK-A3WW-01 15 68609618 68609618 G A ITGA11 Silent p.F900F 0.19 TCGA-DK-A3WW-01 15 72558264 72558264 G C PARP6 Missense_Mutation p.I50M 0.19 deleterious(0.01) benign(0.092) TCGA-DK-A3WW-01 15 73624577 73624577 G A HCN4 Silent p.I422I 0.18 TCGA-DK-A3WW-01 15 75715054 75715054 C G SIN3A Missense_Mutation p.Q100H 0.33 tolerated(0.11) benign(0.029) TCGA-DK-A3WW-01 15 75798209 75798209 C T PTPN9 Missense_Mutation p.D259N 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-DK-A3WW-01 15 76196329 76196329 G A FBXO22 Missense_Mutation p.E9K 0.36 tolerated_low_confidence(0.75) benign(0.001) TCGA-DK-A3WW-01 15 76994204 76994204 G A SCAPER Silent p.I801I 0.21 TCGA-DK-A3WW-01 15 78635840 78635840 G A CRABP1 Splice_Site p.X84_splice 0.14 TCGA-DK-A3WW-01 15 81199101 81199101 G A KIAA1199 Silent p.E503E 0.23 TCGA-DK-A3WW-01 15 81660670 81660670 C T TMC3 Splice_Site p.X79_splice 0.23 TCGA-DK-A3WW-01 15 89400090 89400090 G C ACAN Missense_Mutation p.G1425A 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-DK-A3WW-01 15 89417171 89417171 G C ACAN Missense_Mutation p.E2478Q 0.16 tolerated(1) possibly_damaging(0.474) TCGA-DK-A3WW-01 15 89417256 89417256 G T ACAN Splice_Site p.X2506_splice 0.27 TCGA-DK-A3WW-01 15 90278777 90278777 C T WDR93 Missense_Mutation p.P534L 0.21 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 15 93277233 93277233 C T RP11-386M24.4 RNA 0.27 TCGA-DK-A3WW-01 15 93527668 93527668 G C CHD2 Missense_Mutation p.E1059Q 0.12 tolerated(0.09) benign(0.186) TCGA-DK-A3WW-01 16 14989917 14989917 C G NOMO1 3'UTR 0.10 TCGA-DK-A3WW-01 16 15157071 15157071 G C RRN3 Missense_Mutation p.F592L 0.22 tolerated(0.74) benign(0) TCGA-DK-A3WW-01 16 15718642 15718642 G A KIAA0430 Nonsense_Mutation p.Q752* 0.22 TCGA-DK-A3WW-01 16 15835629 15835629 C T MYH11 Silent p.Q887Q 0.24 TCGA-DK-A3WW-01 16 16184358 16184358 C T ABCC1 Nonsense_Mutation p.Q853* 0.18 TCGA-DK-A3WW-01 16 17211612 17211612 C T XYLT1 Silent p.L816L 0.13 TCGA-DK-A3WW-01 16 23703600 23703600 G C ERN2 Missense_Mutation p.S766C 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 16 23766366 23766366 C T CHP2 5'UTR 0.19 TCGA-DK-A3WW-01 16 23767007 23767007 G A CHP2 Silent p.L31L 0.21 TCGA-DK-A3WW-01 16 24931293 24931293 C T ARHGAP17 3'UTR 0.13 TCGA-DK-A3WW-01 16 2581056 2581056 C T CEMP1 Missense_Mutation p.D7N 0.17 tolerated_low_confidence(0.21) possibly_damaging(0.728) TCGA-DK-A3WW-01 16 27544708 27544708 C T GTF3C1 Silent p.R251R 0.25 TCGA-DK-A3WW-01 16 28167708 28167708 G T XPO6 Missense_Mutation p.L262M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 16 28603660 28603660 C T SULT1A2 Silent p.K233K 0.19 TCGA-DK-A3WW-01 16 28883708 28883708 C T SH2B1 Nonsense_Mutation p.Q571* 0.24 TCGA-DK-A3WW-01 16 3065463 3065463 G T CLDN6 Nonsense_Mutation p.S187* 0.23 TCGA-DK-A3WW-01 16 30750601 30750601 G C SRCAP Missense_Mutation p.K3080N 0.25 unknown(0) TCGA-DK-A3WW-01 16 31087769 31087769 G A ZNF646 Missense_Mutation p.D42N 0.28 tolerated(0.2) benign(0.011) TCGA-DK-A3WW-01 16 31283172 31283172 C G ITGAM Missense_Mutation p.S188C 0.25 deleterious(0) probably_damaging(0.943) TCGA-DK-A3WW-01 16 3139503 3139503 G A ZSCAN10 Silent p.S589S 0.19 TCGA-DK-A3WW-01 16 3543964 3543964 C G C16orf90 Missense_Mutation p.D142H 0.40 deleterious_low_confidence(0.01) benign(0.094) TCGA-DK-A3WW-01 16 3586392 3586392 G A CLUAP1 3'UTR 0.28 TCGA-DK-A3WW-01 16 46694412 46694412 C T VPS35 Missense_Mutation p.G788E 0.19 tolerated(0.08) possibly_damaging(0.536) TCGA-DK-A3WW-01 16 48162609 48162609 G A ABCC12 Nonsense_Mutation p.Q426* 0.24 TCGA-DK-A3WW-01 16 48290643 48290643 G A LONP2 Silent p.E197E 0.20 TCGA-DK-A3WW-01 16 4945714 4945714 G A PPL Missense_Mutation p.H326Y 0.28 tolerated(0.06) benign(0.009) TCGA-DK-A3WW-01 16 53352146 53352146 G A CHD9 Missense_Mutation p.R2520K 0.12 unknown(0) TCGA-DK-A3WW-01 16 55601337 55601337 C G CAPNS2 Missense_Mutation p.F223L 0.26 deleterious(0.04) possibly_damaging(0.502) TCGA-DK-A3WW-01 16 56485527 56485527 G T OGFOD1 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.843) TCGA-DK-A3WW-01 16 56970630 56970630 C G HERPUD1 Missense_Mutation p.S111C 0.21 tolerated(0.18) benign(0.246) TCGA-DK-A3WW-01 16 57447820 57447820 G C CCL17 5'UTR 0.19 TCGA-DK-A3WW-01 16 57710248 57710248 C T GPR97 Nonsense_Mutation p.Q115* 0.24 TCGA-DK-A3WW-01 16 66861971 66861971 G A NAE1 Intron 0.27 TCGA-DK-A3WW-01 16 67681650 67681650 G C RLTPR Missense_Mutation p.Q313H 0.25 deleterious(0.03) benign(0.009) TCGA-DK-A3WW-01 16 67683002 67683002 C G RLTPR Missense_Mutation p.L539V 0.33 deleterious(0) benign(0.443) TCGA-DK-A3WW-01 16 67899100 67899100 G C NUTF2 Missense_Mutation p.D23H 0.24 deleterious(0) benign(0.258) TCGA-DK-A3WW-01 16 68386284 68386284 C T PRMT7 Missense_Mutation p.S516L 0.25 tolerated(0.15) benign(0.002) TCGA-DK-A3WW-01 16 68721569 68721569 C T CDH3 Silent p.H575H 0.19 TCGA-DK-A3WW-01 16 68961944 68961944 G C TANGO6 Missense_Mutation p.Q867H 0.38 tolerated(0.2) benign(0.015) TCGA-DK-A3WW-01 16 70975573 70975573 C T HYDIN Missense_Mutation p.M2273I 0.19 possibly_damaging(0.584) TCGA-DK-A3WW-01 16 71610277 71610277 G C TAT Silent p.L14L 0.21 TCGA-DK-A3WW-01 16 71718466 71718466 G A PHLPP2 Silent p.F216F 0.22 TCGA-DK-A3WW-01 16 72094738 72094738 G A HP Silent p.V390V 0.22 TCGA-DK-A3WW-01 16 72828402 72828402 C A ZFHX3 Nonsense_Mutation p.E2727* 0.23 TCGA-DK-A3WW-01 16 76587302 76587302 G A CNTNAP4 Missense_Mutation p.D1116N 0.23 tolerated(0.06) benign(0.01) TCGA-DK-A3WW-01 16 79633490 79633490 C T MAF Missense_Mutation p.E104K 0.16 deleterious(0) unknown(0) TCGA-DK-A3WW-01 16 81095596 81095596 C T C16orf46 Missense_Mutation p.E120K 0.21 tolerated(0.06) benign(0.395) TCGA-DK-A3WW-01 16 81198281 81198281 G A PKD1L2 RNA 0.23 TCGA-DK-A3WW-01 16 84129320 84129320 G C MBTPS1 Missense_Mutation p.S171C 0.20 deleterious(0.02) possibly_damaging(0.502) TCGA-DK-A3WW-01 16 84215615 84215615 C T TAF1C Silent p.G257G 0.23 TCGA-DK-A3WW-01 16 84883009 84883009 C T CRISPLD2 Silent p.F126F 0.17 TCGA-DK-A3WW-01 16 88694373 88694373 G C ZC3H18 Missense_Mutation p.R772T 0.27 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-DK-A3WW-01 16 88926377 88926377 C G TRAPPC2L Missense_Mutation p.S124C 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A3WW-01 16 89348573 89348576 CTTC TTT ANKRD11 Frame_Shift_Del p.K1460Rfs*71 0.22 TCGA-DK-A3WW-01 16 89777028 89777028 C T VPS9D1 Silent p.L408L 0.25 TCGA-DK-A3WW-01 16 8997182 8997182 G C USP7 Missense_Mutation p.F594L 0.20 tolerated(0.3) benign(0.023) TCGA-DK-A3WW-01 16 90106743 90106743 C T GAS8 Silent p.F349F 0.21 TCGA-DK-A3WW-01 17 12032537 12032537 C A MAP2K4 Missense_Mutation p.P325T 0.31 deleterious(0) possibly_damaging(0.647) TCGA-DK-A3WW-01 17 1257622 1257622 C G YWHAE Missense_Mutation p.D200H 0.31 tolerated_low_confidence(0.05) benign(0.089) TCGA-DK-A3WW-01 17 13980182 13980182 C T COX10 Missense_Mutation p.S103L 0.14 tolerated(0.22) benign(0.003) TCGA-DK-A3WW-01 17 1478943 1478943 G C SLC43A2 Silent p.L555L 0.18 TCGA-DK-A3WW-01 17 1639411 1639411 G A WDR81 Missense_Mutation p.V1802M 0.28 tolerated(0.18) benign(0.133) TCGA-DK-A3WW-01 17 1640893 1640893 G A WDR81 Missense_Mutation p.G1914S 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 17 16612513 16612513 C T CCDC144A Missense_Mutation p.S381F 0.20 deleterious(0) possibly_damaging(0.831) TCGA-DK-A3WW-01 17 17772713 17772713 G A TOM1L2 Silent p.V284V 0.24 TCGA-DK-A3WW-01 17 18232688 18232688 G C SHMT1 Missense_Mutation p.L396V 0.24 deleterious(0.02) possibly_damaging(0.534) TCGA-DK-A3WW-01 17 18907360 18907360 C T FAM83G 5'UTR 0.16 TCGA-DK-A3WW-01 17 19576463 19576463 G A ALDH3A2 Splice_Site p.X482_splice 0.22 TCGA-DK-A3WW-01 17 2575996 2575996 C T PAFAH1B1 Missense_Mutation p.H206Y 0.25 tolerated(1) benign(0.007) TCGA-DK-A3WW-01 17 26697287 26697287 G C VTN 5'UTR 0.28 TCGA-DK-A3WW-01 17 27579109 27579109 C T CRYBA1 Silent p.F81F 0.22 TCGA-DK-A3WW-01 17 28380803 28380803 G C EFCAB5 Missense_Mutation p.E611Q 0.27 tolerated(0.35) benign(0.045) TCGA-DK-A3WW-01 17 33977735 33977735 C T AP2B1 Missense_Mutation p.H575Y 0.30 deleterious(0.02) possibly_damaging(0.604) TCGA-DK-A3WW-01 17 36003428 36003428 G A DDX52 Missense_Mutation p.R8C 0.15 deleterious(0) benign(0.047) TCGA-DK-A3WW-01 17 36484647 36484647 C G GPR179 Missense_Mutation p.R1602T 0.21 tolerated(0.66) benign(0.001) TCGA-DK-A3WW-01 17 36485920 36485920 C G GPR179 Missense_Mutation p.D1178H 0.22 deleterious(0) possibly_damaging(0.789) TCGA-DK-A3WW-01 17 36486038 36486038 C T GPR179 Silent p.V1138V 0.24 TCGA-DK-A3WW-01 17 36486125 36486125 C T GPR179 Silent p.E1109E 0.24 TCGA-DK-A3WW-01 17 36486274 36486274 C T GPR179 Missense_Mutation p.D1060N 0.32 tolerated(0.13) benign(0.025) TCGA-DK-A3WW-01 17 36486362 36486362 C A GPR179 Missense_Mutation p.W1030C 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A3WW-01 17 37223982 37223982 C G PLXDC1 3'UTR 0.33 TCGA-DK-A3WW-01 17 37564794 37564794 G A MED1 Missense_Mutation p.S1227L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-DK-A3WW-01 17 38449865 38449865 C T CDC6 Missense_Mutation p.A273V 0.24 tolerated(0.06) benign(0.03) TCGA-DK-A3WW-01 17 38859916 38859916 G A KRT24 Silent p.S10S 0.22 TCGA-DK-A3WW-01 17 3926119 3926119 G A ZZEF1 Missense_Mutation p.H2366Y 0.19 deleterious(0.01) possibly_damaging(0.609) TCGA-DK-A3WW-01 17 3945848 3945848 C G ZZEF1 Missense_Mutation p.E2061Q 0.25 tolerated(0.34) benign(0.004) TCGA-DK-A3WW-01 17 40068700 40068700 C T ACLY Silent p.L85L 0.20 TCGA-DK-A3WW-01 17 40175730 40175730 C G NKIRAS2 Missense_Mutation p.P132R 0.14 tolerated(0.34) benign(0.034) TCGA-DK-A3WW-01 17 40716787 40716787 G C COASY Missense_Mutation p.G399R 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 17 40831665 40831665 G A CCR10 Missense_Mutation p.S332L 0.19 tolerated(0.24) benign(0.006) TCGA-DK-A3WW-01 17 40831709 40831709 G A CCR10 Silent p.F317F 0.21 TCGA-DK-A3WW-01 17 40831733 40831733 G C CCR10 Silent p.L309L 0.11 TCGA-DK-A3WW-01 17 40831760 40831760 G A CCR10 Silent p.L300L 0.13 TCGA-DK-A3WW-01 17 40831892 40831892 G A CCR10 Silent p.F256F 0.21 TCGA-DK-A3WW-01 17 40864325 40864325 C A EZH1 Silent p.G461G 0.19 TCGA-DK-A3WW-01 17 40947953 40947953 G A WNK4 Missense_Mutation p.M1111I 0.27 tolerated(0.19) benign(0.092) TCGA-DK-A3WW-01 17 41143537 41143537 A G RUNDC1 Missense_Mutation p.Q549R 0.23 tolerated(0.22) probably_damaging(0.999) TCGA-DK-A3WW-01 17 41174209 41174209 G T VAT1 Nonsense_Mutation p.S44* 0.27 TCGA-DK-A3WW-01 17 41610076 41610076 G A ETV4 Silent p.I259I 0.23 TCGA-DK-A3WW-01 17 42289312 42289312 G C UBTF Silent p.T278T 0.21 TCGA-DK-A3WW-01 17 42398044 42398044 C T SLC25A39 Silent p.P249P 0.29 TCGA-DK-A3WW-01 17 43227467 43227467 G A HEXIM1 Missense_Mutation p.E304K 0.11 deleterious(0.03) probably_damaging(0.989) TCGA-DK-A3WW-01 17 4574817 4574817 C T PELP1 Missense_Mutation p.D1104N 0.17 unknown(0) TCGA-DK-A3WW-01 17 46262095 46262095 C T SKAP1 Missense_Mutation p.R186H 0.31 deleterious(0.02) possibly_damaging(0.72) TCGA-DK-A3WW-01 17 46691686 46691686 C G HOXB8 Missense_Mutation p.Q127H 0.20 tolerated(0.1) probably_damaging(0.931) TCGA-DK-A3WW-01 17 48046847 48046847 C T DLX4 Silent p.P5P 0.19 TCGA-DK-A3WW-01 17 48194939 48194939 C T SAMD14 Missense_Mutation p.E111K 0.23 tolerated(0.26) benign(0.071) TCGA-DK-A3WW-01 17 48600299 48600299 G A MYCBPAP Splice_Site p.X463_splice 0.21 TCGA-DK-A3WW-01 17 48632592 48632592 G C SPATA20 Splice_Site p.X720_splice 0.21 TCGA-DK-A3WW-01 17 48741345 48741345 C T ABCC3 Missense_Mutation p.S404F 0.44 tolerated(0.05) benign(0.098) TCGA-DK-A3WW-01 17 48917594 48917594 G C WFIKKN2 Missense_Mutation p.E315D 0.23 tolerated(0.48) benign(0.001) TCGA-DK-A3WW-01 17 4891776 4891776 G A INCA1 Missense_Mutation p.S212L 0.23 deleterious(0.01) benign(0.178) TCGA-DK-A3WW-01 17 49270356 49270356 G A MBTD1 Missense_Mutation p.R493C 0.30 deleterious(0.05) benign(0.002) TCGA-DK-A3WW-01 17 50235295 50235295 C T CA10 5'UTR 0.31 TCGA-DK-A3WW-01 17 54940071 54940071 G A DGKE Missense_Mutation p.M541I 0.62 tolerated(0.31) benign(0.001) TCGA-DK-A3WW-01 17 56358002 56358002 G C MPO Missense_Mutation p.L40V 0.20 deleterious(0.03) benign(0.013) TCGA-DK-A3WW-01 17 56540327 56540327 G C HSF5 Missense_Mutation p.S453C 0.23 deleterious(0.01) possibly_damaging(0.759) TCGA-DK-A3WW-01 17 56569025 56569025 C T MTMR4 Silent p.%3D 0.23 TCGA-DK-A3WW-01 17 58128216 58128216 G A HEATR6 Silent p.F804F 0.21 TCGA-DK-A3WW-01 17 58234821 58234821 C T CA4 Missense_Mutation p.S101F 0.20 tolerated(0.06) benign(0.275) TCGA-DK-A3WW-01 17 59770842 59770842 G C BRIP1 Missense_Mutation p.L842V 0.27 deleterious(0.03) probably_damaging(0.975) TCGA-DK-A3WW-01 17 60059866 60059866 G C MED13 Silent p.L1166L 0.16 TCGA-DK-A3WW-01 17 60140470 60140470 C T MED13 Missense_Mutation p.E87K 0.29 deleterious(0.03) benign(0.006) TCGA-DK-A3WW-01 17 60342436 60342436 G C TBC1D3P2 3'Flank 0.18 TCGA-DK-A3WW-01 17 60685465 60685465 G A TLK2 Missense_Mutation p.E679K 0.25 tolerated(0.19) possibly_damaging(0.786) TCGA-DK-A3WW-01 17 61560831 61560831 C T ACE Nonsense_Mutation p.Q500* 0.24 TCGA-DK-A3WW-01 17 61601526 61601526 C T KCNH6 Nonsense_Mutation p.Q35* 0.23 TCGA-DK-A3WW-01 17 61901514 61901514 C G FTSJ3 Missense_Mutation p.E362Q 0.23 tolerated(0.15) benign(0.41) TCGA-DK-A3WW-01 17 61987044 61987044 A T CSHL1 3'Flank 0.20 TCGA-DK-A3WW-01 17 62533747 62533747 G A CEP95 Silent p.L772L 0.34 TCGA-DK-A3WW-01 17 63133647 63133647 C T RGS9 5'UTR 0.17 TCGA-DK-A3WW-01 17 63156421 63156421 C G RGS9 Silent p.L92L 0.23 TCGA-DK-A3WW-01 17 63545744 63545744 G A AXIN2 Missense_Mutation p.H284Y 0.18 tolerated(1) benign(0.085) TCGA-DK-A3WW-01 17 6589554 6589554 C T SLC13A5 Nonsense_Mutation p.W560* 0.22 TCGA-DK-A3WW-01 17 66423333 66423333 G A WIPI1 Nonsense_Mutation p.Q379* 0.18 TCGA-DK-A3WW-01 17 66526076 66526076 C G PRKAR1A Missense_Mutation p.L303V 0.25 deleterious(0.01) benign(0.012) TCGA-DK-A3WW-01 17 6683407 6683407 G A FBXO39 Missense_Mutation p.E74K 0.23 deleterious(0.03) possibly_damaging(0.459) TCGA-DK-A3WW-01 17 66890330 66890330 C T ABCA8 Missense_Mutation p.R967K 0.16 deleterious(0.02) benign(0.098) TCGA-DK-A3WW-01 17 66890331 66890331 T A ABCA8 Nonsense_Mutation p.R967* 0.16 TCGA-DK-A3WW-01 17 67152011 67152011 C G ABCA10 Missense_Mutation p.D1171H 0.19 deleterious(0.01) possibly_damaging(0.743) TCGA-DK-A3WW-01 17 7145557 7145557 C T GABARAP Intron 0.22 TCGA-DK-A3WW-01 17 72339221 72339221 G T KIF19 Missense_Mutation p.Q126H 0.31 deleterious(0) benign(0.01) TCGA-DK-A3WW-01 17 7256104 7256104 C G KCTD11 5'UTR 0.22 TCGA-DK-A3WW-01 17 7256927 7256927 C G KCTD11 Silent p.L222L 0.30 TCGA-DK-A3WW-01 17 7256940 7256940 C G KCTD11 Missense_Mutation p.L227V 0.31 tolerated(0.12) probably_damaging(0.991) TCGA-DK-A3WW-01 17 72584728 72584728 C A CD300LD Missense_Mutation p.D101Y 0.08 deleterious(0.04) probably_damaging(1) TCGA-DK-A3WW-01 17 7258907 7258907 G A TMEM95 Missense_Mutation p.E58K 0.40 deleterious(0.05) possibly_damaging(0.486) TCGA-DK-A3WW-01 17 72667703 72667703 G C CTD-2006K23.2 3'Flank 0.24 TCGA-DK-A3WW-01 17 73208116 73208116 C T NUP85 Missense_Mutation p.S107L 0.12 deleterious(0) probably_damaging(0.986) TCGA-DK-A3WW-01 17 73258675 73258675 G A MRPS7 Missense_Mutation p.E61K 0.19 deleterious(0.02) possibly_damaging(0.78) TCGA-DK-A3WW-01 17 73725400 73725400 C T ITGB4 Silent p.I207I 0.20 TCGA-DK-A3WW-01 17 73824970 73824970 C T UNC13D Missense_Mutation p.E1017K 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 17 73919562 73919562 C G FBF1 Missense_Mutation p.E362Q 0.22 deleterious(0.02) probably_damaging(0.971) TCGA-DK-A3WW-01 17 76422558 76422558 C G DNAH17 Missense_Mutation p.D4322H 0.30 probably_damaging(0.988) TCGA-DK-A3WW-01 17 76490238 76490238 G A DNAH17 Silent p.I2082I 0.54 TCGA-DK-A3WW-01 17 76496512 76496512 G C DNAH17-AS1 Missense_Mutation p.E148D 0.41 unknown(0) TCGA-DK-A3WW-01 17 76557991 76557991 G C DNAH17 Silent p.V547V 0.20 TCGA-DK-A3WW-01 17 76831483 76831483 G A USP36 Silent p.F118F 0.19 TCGA-DK-A3WW-01 17 7700820 7700820 C T DNAH2 Silent p.L2684L 0.21 TCGA-DK-A3WW-01 17 7733673 7733673 C T DNAH2 Missense_Mutation p.S3970F 0.18 benign(0.278) TCGA-DK-A3WW-01 17 7762898 7762898 C G CYB5D1 Missense_Mutation p.L219V 0.28 tolerated(0.14) possibly_damaging(0.541) TCGA-DK-A3WW-01 17 78061848 78061848 G A CCDC40 Silent p.L886L 0.23 TCGA-DK-A3WW-01 17 78328356 78328356 C G RNF213 Silent p.L3614L 0.20 TCGA-DK-A3WW-01 17 79918540 79918540 C T NOTUM Silent p.A82A 0.30 TCGA-DK-A3WW-01 17 79941448 79941448 C T ASPSCR1 Silent p.L59L 0.28 TCGA-DK-A3WW-01 17 79988621 79988621 G A LRRC45 Silent p.Q651Q 0.43 TCGA-DK-A3WW-01 17 80196577 80196577 G A SLC16A3 Splice_Site p.X375_splice 0.30 TCGA-DK-A3WW-01 17 80708323 80708323 G C FN3K Missense_Mutation p.E208Q 0.25 tolerated(0.1) benign(0.196) TCGA-DK-A3WW-01 17 80788081 80788081 C G ZNF750 Missense_Mutation p.K703N 0.24 deleterious(0) possibly_damaging(0.891) TCGA-DK-A3WW-01 17 80788126 80788126 C G ZNF750 Missense_Mutation p.K688N 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 17 80788419 80788419 C G ZNF750 Missense_Mutation p.E591Q 0.21 tolerated(0.56) benign(0.022) TCGA-DK-A3WW-01 17 80789062 80789062 C T ZNF750 Silent p.T423T 0.26 TCGA-DK-A3WW-01 17 80789532 80789532 C G ZNF750 Missense_Mutation p.E267Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 17 80790213 80790213 G C ZNF750 Missense_Mutation p.L40V 0.52 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 17 8222686 8222686 C T ARHGEF15 Missense_Mutation p.S748F 0.26 tolerated(0.18) benign(0.322) TCGA-DK-A3WW-01 17 8814740 8814740 G A PIK3R5 Silent p.L24L 0.23 TCGA-DK-A3WW-01 17 8926117 8926117 G A NTN1 Missense_Mutation p.E143K 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 18 10671659 10671659 C T PIEZO2 Silent p.L2708L 0.18 TCGA-DK-A3WW-01 18 11897224 11897224 G A MPPE1 Missense_Mutation p.H14Y 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-DK-A3WW-01 18 12264384 12264384 G C CIDEA Missense_Mutation p.E88Q 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-DK-A3WW-01 18 13059091 13059091 C G CEP192 Nonsense_Mutation p.S1423* 0.26 TCGA-DK-A3WW-01 18 19427037 19427037 G A MIB1 Missense_Mutation p.D782N 0.25 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 18 20735786 20735786 C T CABLES1 Intron 0.31 TCGA-DK-A3WW-01 18 21327958 21327958 G A LAMA3 Missense_Mutation p.D167N 0.22 possibly_damaging(0.898) TCGA-DK-A3WW-01 18 21453131 21453131 C T LAMA3 Intron 0.27 TCGA-DK-A3WW-01 18 28720002 28720002 C T DSC1 Intron 0.26 TCGA-DK-A3WW-01 18 28720060 28720060 C G DSC1 Missense_Mutation p.E489Q 0.23 tolerated(0.37) benign(0.125) TCGA-DK-A3WW-01 18 2891158 2891158 G A EMILIN2 Missense_Mutation p.E345K 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3WW-01 18 28916386 28916386 C A DSG1 Missense_Mutation p.H359N 0.17 deleterious(0.02) benign(0.044) TCGA-DK-A3WW-01 18 28923426 28923426 G C DSG1 Missense_Mutation p.L567F 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-DK-A3WW-01 18 28923523 28923523 G C DSG1 Missense_Mutation p.E600Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 18 30913193 30913193 G C CCDC178 Missense_Mutation p.S275C 0.19 deleterious(0.02) probably_damaging(0.936) TCGA-DK-A3WW-01 18 31319557 31319557 C T ASXL3 Missense_Mutation p.S730L 0.21 probably_damaging(0.997) TCGA-DK-A3WW-01 18 34376949 34376949 G C TPGS2 Missense_Mutation p.S241C 0.26 tolerated(0.21) benign(0.013) TCGA-DK-A3WW-01 18 34415224 34415224 C G KIAA1328 Nonsense_Mutation p.S41* 0.22 TCGA-DK-A3WW-01 18 346722 346722 G A COLEC12 Silent p.I300I 0.21 TCGA-DK-A3WW-01 18 39623694 39623694 C G PIK3C3 Intron 0.26 TCGA-DK-A3WW-01 18 42530198 42530198 C T SETBP1 Missense_Mutation p.S298L 0.20 tolerated(0.09) benign(0.11) TCGA-DK-A3WW-01 18 43319255 43319255 C T SLC14A1 Missense_Mutation p.S320L 0.24 deleterious(0) probably_damaging(0.981) TCGA-DK-A3WW-01 18 44561352 44561352 G T TCEB3B Missense_Mutation p.S95Y 0.23 deleterious(0) probably_damaging(0.991) TCGA-DK-A3WW-01 18 44682582 44682582 G C IER3IP1 Nonsense_Mutation p.S72* 0.16 TCGA-DK-A3WW-01 18 47581731 47581731 G A MYO5B Silent p.I15I 0.21 TCGA-DK-A3WW-01 18 47810410 47810410 C T CXXC1 Missense_Mutation p.E427K 0.28 deleterious(0) probably_damaging(0.981) TCGA-DK-A3WW-01 18 48241446 48241446 C G MAPK4 Intron 0.11 TCGA-DK-A3WW-01 18 5397426 5397426 C G EPB41L3 Splice_Site p.X825_splice 0.21 TCGA-DK-A3WW-01 18 56205258 56205258 C T ALPK2 Missense_Mutation p.E721K 0.26 tolerated(0.07) benign(0.354) TCGA-DK-A3WW-01 18 61170752 61170752 G C SERPINB5 Missense_Mutation p.E309Q 0.35 tolerated(0.26) probably_damaging(0.932) TCGA-DK-A3WW-01 18 61654502 61654502 C T SERPINB8 Missense_Mutation p.S372F 0.26 deleterious(0.01) benign(0.151) TCGA-DK-A3WW-01 18 7231348 7231348 C A LRRC30 Missense_Mutation p.S71Y 0.23 tolerated(0.55) benign(0.44) TCGA-DK-A3WW-01 18 72999280 72999280 G A TSHZ1 Missense_Mutation p.E595K 0.16 tolerated(0.18) possibly_damaging(0.541) TCGA-DK-A3WW-01 18 9396492 9396492 G C TWSG1 Missense_Mutation p.Q146H 0.24 tolerated(0.2) benign(0.059) TCGA-DK-A3WW-01 19 10246920 10246920 G A DNMT1 Silent p.L1511L 0.20 TCGA-DK-A3WW-01 19 1041327 1041327 G C ABCA7 5'UTR 0.20 TCGA-DK-A3WW-01 19 10662853 10662853 C G ATG4D Intron 0.22 TCGA-DK-A3WW-01 19 11558333 11558333 C T PRKCSH Missense_Mutation p.S310L 0.14 tolerated(0.33) benign(0) TCGA-DK-A3WW-01 19 11687567 11687567 G A ACP5 Missense_Mutation p.S118F 0.24 deleterious(0) probably_damaging(0.972) TCGA-DK-A3WW-01 19 11917627 11917627 C T ZNF491 Nonsense_Mutation p.Q287* 0.15 TCGA-DK-A3WW-01 19 12059829 12059829 G C ZNF700 Silent p.G330G 0.26 TCGA-DK-A3WW-01 19 12800989 12800989 G C FBXW9 Intron 0.45 TCGA-DK-A3WW-01 19 12807065 12807065 G C FBXW9 Missense_Mutation p.R111G 0.33 tolerated(0.19) possibly_damaging(0.545) TCGA-DK-A3WW-01 19 12885402 12885402 C G HOOK2 Intron 0.48 TCGA-DK-A3WW-01 19 12885536 12885536 C T HOOK2 Missense_Mutation p.E51K 0.25 deleterious(0.04) benign(0.193) TCGA-DK-A3WW-01 19 12911682 12911682 G C PRDX2 Intron 0.23 TCGA-DK-A3WW-01 19 12911749 12911749 G A PRDX2 Nonsense_Mutation p.Q80* 0.17 TCGA-DK-A3WW-01 19 12911751 12911751 G A PRDX2 Missense_Mutation p.S79F 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 19 12911760 12911760 G A PRDX2 Missense_Mutation p.S76L 0.18 deleterious(0.04) possibly_damaging(0.604) TCGA-DK-A3WW-01 19 13260331 13260331 C G STX10 Silent p.R94R 0.27 TCGA-DK-A3WW-01 19 13476255 13476255 C T CACNA1A Missense_Mutation p.M220I 0.24 benign(0.216) TCGA-DK-A3WW-01 19 13869691 13869691 G T CCDC130 Missense_Mutation p.M89I 0.21 deleterious(0) probably_damaging(0.984) TCGA-DK-A3WW-01 19 15662126 15662126 C T CYP4F22 Silent p.F480F 0.28 TCGA-DK-A3WW-01 19 16000358 16000358 C T CYP4F2 Missense_Mutation p.D265N 0.29 tolerated(0.36) benign(0.014) TCGA-DK-A3WW-01 19 18239752 18239752 G C MAST3 Missense_Mutation p.G376A 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 19 1828237 1828237 G A REXO1 Missense_Mutation p.S184F 0.15 deleterious(0) possibly_damaging(0.541) TCGA-DK-A3WW-01 19 18876304 18876304 C T CRTC1 Missense_Mutation p.S342L 0.25 deleterious(0.04) possibly_damaging(0.771) TCGA-DK-A3WW-01 19 18896558 18896558 G A COMP Silent p.F531F 0.29 TCGA-DK-A3WW-01 19 18965463 18965463 G A UPF1 Missense_Mutation p.E404K 0.25 tolerated(0.13) benign(0.029) TCGA-DK-A3WW-01 19 19735051 19735051 G C LPAR2 3'UTR 0.09 TCGA-DK-A3WW-01 19 2180747 2180747 G A DOT1L Silent p.E39E 0.17 TCGA-DK-A3WW-01 19 2214405 2214405 G A DOT1L Intron 0.17 TCGA-DK-A3WW-01 19 2291284 2291284 G T LINGO3 Missense_Mutation p.F164L 0.15 deleterious(0.01) possibly_damaging(0.902) TCGA-DK-A3WW-01 19 24310862 24310862 G A ZNF254 3'UTR 0.26 TCGA-DK-A3WW-01 19 2939284 2939284 G C ZNF77 Missense_Mutation p.S42C 0.23 deleterious(0) probably_damaging(0.986) TCGA-DK-A3WW-01 19 3527044 3527044 C A FZR1 Missense_Mutation p.P152T 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-DK-A3WW-01 19 3550998 3550998 C G MFSD12 Missense_Mutation p.E165Q 0.39 possibly_damaging(0.673) TCGA-DK-A3WW-01 19 35517044 35517044 G A GRAMD1A Silent p.%3D 0.24 TCGA-DK-A3WW-01 19 35616111 35616111 C G LGI4 Missense_Mutation p.D534H 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 19 3590172 3590172 G C GIPC3 Missense_Mutation p.R308T 0.27 deleterious(0) benign(0.081) TCGA-DK-A3WW-01 19 36120478 36120478 C T RBM42 Missense_Mutation p.A62V 0.23 tolerated(0.39) possibly_damaging(0.77) TCGA-DK-A3WW-01 19 36221766 36221766 C G KMT2B Nonsense_Mutation p.S1812* 0.41 TCGA-DK-A3WW-01 19 36243325 36243325 C G LIN37 Intron 0.28 TCGA-DK-A3WW-01 19 36243446 36243446 C G LIN37 Intron 0.15 TCGA-DK-A3WW-01 19 37038408 37038408 G A ZNF529 Missense_Mutation p.S351L 0.29 deleterious(0.05) possibly_damaging(0.64) TCGA-DK-A3WW-01 19 37130859 37130859 C G ZNF461 Missense_Mutation p.E130Q 0.30 tolerated(0.68) benign(0) TCGA-DK-A3WW-01 19 37210440 37210440 C A ZNF567 Missense_Mutation p.Q241K 0.23 deleterious(0.03) benign(0.168) TCGA-DK-A3WW-01 19 37441842 37441842 C G ZNF568 Missense_Mutation p.S596C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 19 3779175 3779175 C G MATK Missense_Mutation p.E339Q 0.17 tolerated(0.32) benign(0.296) TCGA-DK-A3WW-01 19 38200664 38200664 G A ZNF607 Silent p.L23L 0.24 TCGA-DK-A3WW-01 19 38610244 38610244 G C SIPA1L3 Missense_Mutation p.E864Q 0.31 deleterious(0.02) probably_damaging(1) TCGA-DK-A3WW-01 19 38799901 38799901 C A YIF1B Missense_Mutation p.R122I 0.23 deleterious(0) benign(0.166) TCGA-DK-A3WW-01 19 39398291 39398291 G C NFKBIB Missense_Mutation p.D321H 0.14 tolerated(0.06) possibly_damaging(0.739) TCGA-DK-A3WW-01 19 39435635 39435635 G T CTC-360G5.8 Missense_Mutation p.Q128K 0.18 deleterious_low_confidence(0.03) benign(0.03) TCGA-DK-A3WW-01 19 39899334 39899334 G A ZFP36 Missense_Mutation p.E332K 0.17 deleterious(0.01) probably_damaging(0.919) TCGA-DK-A3WW-01 19 40889768 40889768 G A HIPK4 Silent p.F248F 0.10 TCGA-DK-A3WW-01 19 41235160 41235160 G C ITPKC Missense_Mutation p.E437Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-DK-A3WW-01 19 41596470 41596470 G T CYP2A13 Splice_Site p.X218_splice 0.13 TCGA-DK-A3WW-01 19 42728670 42728670 G A ZNF526 Missense_Mutation p.E39K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-DK-A3WW-01 19 42797160 42797160 G A CIC Silent p.P1174P 0.19 TCGA-DK-A3WW-01 19 42828958 42828958 C G TMEM145 Missense_Mutation p.R491G 0.24 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-DK-A3WW-01 19 42863100 42863100 G A MEGF8 Silent p.L1712L 0.20 TCGA-DK-A3WW-01 19 44273668 44273668 G C KCNN4 Missense_Mutation p.F325L 0.27 tolerated(0.28) benign(0.007) TCGA-DK-A3WW-01 19 44351774 44351774 C T ZNF283 Missense_Mutation p.H341Y 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A3WW-01 19 45781258 45781258 G A MARK4 Silent p.R288R 0.28 TCGA-DK-A3WW-01 19 46294229 46294229 G C DMWD Missense_Mutation p.F186L 0.26 deleterious(0.05) possibly_damaging(0.483) TCGA-DK-A3WW-01 19 46733686 46733686 G C IGFL1 Missense_Mutation p.E79Q 0.21 deleterious(0.04) probably_damaging(0.955) TCGA-DK-A3WW-01 19 47224014 47224014 G C STRN4 Missense_Mutation p.L710V 0.15 tolerated(0.19) probably_damaging(0.99) TCGA-DK-A3WW-01 19 48908550 48908550 C G GRIN2D Missense_Mutation p.P342R 0.22 deleterious(0) benign(0.294) TCGA-DK-A3WW-01 19 49656911 49656911 G A HRC Silent p.L528L 0.26 TCGA-DK-A3WW-01 19 50155667 50155667 C G SCAF1 Missense_Mutation p.S674W 0.29 unknown(0) TCGA-DK-A3WW-01 19 51140778 51140778 G C SYT3 5'UTR 0.44 TCGA-DK-A3WW-01 19 51452191 51452191 G A KLK5 Silent p.I172I 0.21 TCGA-DK-A3WW-01 19 5231463 5231463 C T PTPRS Silent p.V671V 0.32 TCGA-DK-A3WW-01 19 53158848 53158848 C G CTD-3099C6.9 5'Flank 0.23 TCGA-DK-A3WW-01 19 53886139 53886139 A G ZNF525 3'UTR 0.08 TCGA-DK-A3WW-01 19 541369 541369 G A CDC34 Silent p.A176A 0.22 TCGA-DK-A3WW-01 19 54251893 54251893 C T MIR521-1 RNA 0.19 TCGA-DK-A3WW-01 19 54778460 54778460 C A LILRB2 3'UTR 0.16 TCGA-DK-A3WW-01 19 55543735 55543735 G C GP6 Missense_Mutation p.L33V 0.38 tolerated_low_confidence(0.21) benign(0.013) TCGA-DK-A3WW-01 19 56539034 56539034 G T NLRP5 Missense_Mutation p.V479L 0.23 tolerated(0.2) benign(0.034) TCGA-DK-A3WW-01 19 5711936 5711936 G A LONP1 Missense_Mutation p.S239L 0.30 tolerated(0.15) benign(0.001) TCGA-DK-A3WW-01 19 57333096 57333096 G A PEG3 Missense_Mutation p.P198S 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-DK-A3WW-01 19 57646567 57646567 G A ZIM3 Nonsense_Mutation p.Q380* 0.21 TCGA-DK-A3WW-01 19 57840340 57840340 G A ZNF543 Missense_Mutation p.E504K 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-DK-A3WW-01 19 58011448 58011448 G A ZNF773 5'UTR 0.34 TCGA-DK-A3WW-01 19 58319728 58319728 G C ZNF552 Missense_Mutation p.Q302E 0.30 tolerated(0.06) benign(0.002) TCGA-DK-A3WW-01 19 58477903 58477903 C A C19orf18 Missense_Mutation p.M122I 0.23 tolerated(0.23) benign(0.019) TCGA-DK-A3WW-01 19 6426469 6426469 C T SLC25A41 Silent p.L348L 0.24 TCGA-DK-A3WW-01 19 6467705 6467705 G C DENND1C Nonsense_Mutation p.S739* 0.24 TCGA-DK-A3WW-01 19 6664739 6664739 T C TNFSF14 3'UTR 0.12 TCGA-DK-A3WW-01 19 6692953 6692953 C T C3 Silent p.V1124V 0.20 TCGA-DK-A3WW-01 19 677928 677928 G A FSTL3 Silent p.K80K 0.20 TCGA-DK-A3WW-01 19 677931 677931 C T FSTL3 Silent p.I81I 0.22 TCGA-DK-A3WW-01 19 8381530 8381530 C A NDUFA7 Splice_Site p.X34_splice 0.20 TCGA-DK-A3WW-01 19 8386542 8386542 C T RPS28 Silent p.V14V 0.26 TCGA-DK-A3WW-01 19 8586399 8586399 C T MYO1F 3'UTR 0.34 TCGA-DK-A3WW-01 19 9059942 9059942 G A MUC16 Silent p.H9168H 0.14 TCGA-DK-A3WW-01 19 9071650 9071650 C T MUC16 Missense_Mutation p.E5266K 0.11 unknown(0) TCGA-DK-A3WW-01 19 9083542 9083542 G A MUC16 Missense_Mutation p.S2758F 0.24 unknown(0) TCGA-DK-A3WW-01 19 9204520 9204520 C G OR1M1 Silent p.L200L 0.18 TCGA-DK-A3WW-01 19 9297281 9297281 C T OR7D2 Missense_Mutation p.S275L 0.25 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-DK-A3WW-01 19 9362193 9362193 C T OR7E24 Silent p.L158L 0.17 TCGA-DK-A3WW-01 19 9578284 9578284 G C ZNF560 Missense_Mutation p.L447V 0.24 deleterious(0) benign(0.364) TCGA-DK-A3WW-01 19 9639182 9639182 G A ZNF426 Silent p.F513F 0.22 TCGA-DK-A3WW-01 19 9727726 9727726 G A ZNF561 Missense_Mutation p.S79F 0.16 deleterious(0) possibly_damaging(0.638) TCGA-DK-A3WW-01 19 9921757 9921757 G A FBXL12 Missense_Mutation p.P266S 0.17 tolerated(0.4) benign(0.002) TCGA-DK-A3WW-01 1 100357997 100357997 G C AGL Missense_Mutation p.Q1031H 0.16 tolerated(0.2) benign(0.009) TCGA-DK-A3WW-01 1 100464840 100464840 C G SLC35A3 Missense_Mutation p.R71G 0.36 tolerated(0.42) benign(0.009) TCGA-DK-A3WW-01 1 101004970 101004970 C G GPR88 Missense_Mutation p.Q150E 0.14 deleterious(0.03) possibly_damaging(0.672) TCGA-DK-A3WW-01 1 10381764 10381764 C T KIF1B Intron 0.24 TCGA-DK-A3WW-01 1 10479590 10479590 C T PGD Silent p.L442L 0.19 TCGA-DK-A3WW-01 1 109517317 109517317 C T WDR47 Missense_Mutation p.E828K 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 1 109794764 109794764 C T CELSR2 Missense_Mutation p.S688F 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 1 109865577 109865577 G C SORT1 Silent p.L667L 0.19 TCGA-DK-A3WW-01 1 11086932 11086932 G C MASP2 3'UTR 0.23 TCGA-DK-A3WW-01 1 111492647 111492647 C T LRIF1 Silent p.K565K 0.20 TCGA-DK-A3WW-01 1 111734819 111734819 G A DENND2D Silent p.F305F 0.22 TCGA-DK-A3WW-01 1 113241408 113241408 G C MOV10 Missense_Mutation p.L860F 0.23 deleterious(0) possibly_damaging(0.858) TCGA-DK-A3WW-01 1 113242322 113242322 G A MOV10 Missense_Mutation p.E867K 0.20 deleterious(0) possibly_damaging(0.814) TCGA-DK-A3WW-01 1 113242368 113242368 G A MOV10 Missense_Mutation p.R882Q 0.24 deleterious(0) probably_damaging(0.992) TCGA-DK-A3WW-01 1 114189165 114189165 C T MAGI3 Nonsense_Mutation p.Q686* 0.13 TCGA-DK-A3WW-01 1 114226163 114226163 G A MAGI3 Missense_Mutation p.E1325K 0.25 tolerated_low_confidence(0.13) benign(0.384) TCGA-DK-A3WW-01 1 114976330 114976330 G C TRIM33 Missense_Mutation p.Q317E 0.29 deleterious(0.01) benign(0.15) TCGA-DK-A3WW-01 1 117078795 117078795 G C CD58 Silent p.V140V 0.25 TCGA-DK-A3WW-01 1 117142914 117142914 C T IGSF3 Missense_Mutation p.D580N 0.29 deleterious(0.01) benign(0.067) TCGA-DK-A3WW-01 1 117509931 117509931 G C PTGFRN Missense_Mutation p.E680Q 0.27 tolerated(0.73) benign(0.124) TCGA-DK-A3WW-01 1 11772015 11772015 G C DRAXIN Missense_Mutation p.K250N 0.26 deleterious(0) possibly_damaging(0.877) TCGA-DK-A3WW-01 1 118535110 118535110 C G SPAG17 Silent p.L1780L 0.24 TCGA-DK-A3WW-01 1 120436660 120436660 C T ADAM30 Missense_Mutation p.G767E 0.21 tolerated_low_confidence(0.78) benign(0) TCGA-DK-A3WW-01 1 12343399 12343399 G A VPS13D Missense_Mutation p.R1747Q 0.25 benign(0.063) TCGA-DK-A3WW-01 1 12516150 12516150 G A VPS13D Missense_Mutation p.E4144K 0.19 benign(0.444) TCGA-DK-A3WW-01 1 1289570 1289570 C T MXRA8 Intron 0.31 TCGA-DK-A3WW-01 1 13912124 13912124 G C PDPN Intron 0.24 TCGA-DK-A3WW-01 1 14107448 14107448 C T PRDM2 Missense_Mutation p.S1053F 0.24 unknown(0) TCGA-DK-A3WW-01 1 14107484 14107484 C G PRDM2 Missense_Mutation p.S1065C 0.29 unknown(0) TCGA-DK-A3WW-01 1 144876029 144876029 C G PDE4DIP Splice_Site p.X1551_splice 0.11 TCGA-DK-A3WW-01 1 145273377 145273377 G C NOTCH2NL Silent p.L77L 0.07 TCGA-DK-A3WW-01 1 147091378 147091378 C T BCL9 Silent p.L473L 0.28 TCGA-DK-A3WW-01 1 147091483 147091483 C T BCL9 Missense_Mutation p.R508W 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A3WW-01 1 150679155 150679155 C G HORMAD1 Silent p.V226V 0.18 TCGA-DK-A3WW-01 1 150956496 150956496 G C ANXA9 Missense_Mutation p.R73T 0.09 tolerated(0.4) possibly_damaging(0.614) TCGA-DK-A3WW-01 1 151019232 151019232 G A BNIPL 3'UTR 0.19 TCGA-DK-A3WW-01 1 151107335 151107335 G C SEMA6C Missense_Mutation p.Q533E 0.22 deleterious(0) benign(0.092) TCGA-DK-A3WW-01 1 151108595 151108595 G A SEMA6C Missense_Mutation p.S384F 0.14 deleterious(0) possibly_damaging(0.683) TCGA-DK-A3WW-01 1 151108598 151108598 G A SEMA6C Missense_Mutation p.S383F 0.12 deleterious(0) possibly_damaging(0.683) TCGA-DK-A3WW-01 1 151378586 151378586 C T POGZ Silent p.V975V 0.24 TCGA-DK-A3WW-01 1 151492649 151492649 C G CGN Nonsense_Mutation p.S294* 0.18 TCGA-DK-A3WW-01 1 151847214 151847214 G A THEM4 3'UTR 0.26 TCGA-DK-A3WW-01 1 152085023 152085023 C T TCHH Missense_Mutation p.E224K 0.22 unknown(0) TCGA-DK-A3WW-01 1 152128074 152128074 G A RPTN Nonsense_Mutation p.Q501* 0.23 TCGA-DK-A3WW-01 1 152283449 152283449 C T FLG Missense_Mutation p.G1305S 0.24 possibly_damaging(0.855) TCGA-DK-A3WW-01 1 153234383 153234383 G T LOR 3'UTR 0.35 TCGA-DK-A3WW-01 1 154956263 154956263 C G FLAD1 Silent p.L31L 0.25 TCGA-DK-A3WW-01 1 155001832 155001832 G A DCST2 Silent p.L407L 0.26 TCGA-DK-A3WW-01 1 1551937 1551937 C T MIB2 Missense_Mutation p.S75L 0.30 deleterious_low_confidence(0) benign(0) TCGA-DK-A3WW-01 1 155319120 155319120 C T ASH1L Missense_Mutation p.E2518K 0.25 deleterious_low_confidence(0.05) probably_damaging(0.975) TCGA-DK-A3WW-01 1 156146338 156146338 G A SEMA4A Silent p.L612L 0.27 TCGA-DK-A3WW-01 1 156146608 156146608 C T SEMA4A Silent p.L702L 0.18 TCGA-DK-A3WW-01 1 156247731 156247731 G A SMG5 Silent p.I94I 0.21 TCGA-DK-A3WW-01 1 156316677 156316677 G A TSACC Silent p.V94V 0.23 TCGA-DK-A3WW-01 1 156562243 156562243 C T APOA1BP Silent p.V126V 0.21 TCGA-DK-A3WW-01 1 156562250 156562250 C G APOA1BP Missense_Mutation p.R129G 0.18 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 1 157776905 157776905 G A FCRL1 Silent p.L13L 0.22 TCGA-DK-A3WW-01 1 158061274 158061274 C T KIRREL Nonsense_Mutation p.Q467* 0.25 TCGA-DK-A3WW-01 1 15844829 15844829 C T CASP9 Missense_Mutation p.R65Q 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 1 158582706 158582706 G C SPTA1 Missense_Mutation p.D2345E 0.18 deleterious(0.02) benign(0.092) TCGA-DK-A3WW-01 1 160323984 160323984 C T NCSTN Missense_Mutation p.S419F 0.21 tolerated(0.07) benign(0.141) TCGA-DK-A3WW-01 1 16073402 16073402 G A TMEM82 Silent p.Q266Q 0.20 TCGA-DK-A3WW-01 1 161071873 161071873 C G PFDN2 Missense_Mutation p.E85Q 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A3WW-01 1 161137269 161137269 G T PPOX Missense_Mutation p.G111C 0.15 deleterious(0) possibly_damaging(0.82) TCGA-DK-A3WW-01 1 161753803 161753803 C T ATF6 Nonsense_Mutation p.Q91* 0.17 TCGA-DK-A3WW-01 1 162337072 162337072 G C NOS1AP Missense_Mutation p.E446Q 0.22 tolerated_low_confidence(0.17) benign(0.001) TCGA-DK-A3WW-01 1 16245418 16245418 C T SPEN Intron 0.34 TCGA-DK-A3WW-01 1 162482610 162482610 G A UHMK1 Missense_Mutation p.E341K 0.30 tolerated(0.11) benign(0.172) TCGA-DK-A3WW-01 1 16382217 16382217 G A CLCNKB Silent p.V631V 0.15 TCGA-DK-A3WW-01 1 164769035 164769035 A C PBX1 Missense_Mutation p.I204L 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A3WW-01 1 16534235 16534235 C T ARHGEF19 Missense_Mutation p.M244I 0.22 tolerated(0.39) benign(0.004) TCGA-DK-A3WW-01 1 167409970 167409970 G T CD247 Silent p.L31L 0.17 TCGA-DK-A3WW-01 1 16893824 16893824 C G NBPF1 Missense_Mutation p.E897Q 0.03 tolerated(0.51) possibly_damaging(0.617) TCGA-DK-A3WW-01 1 169528466 169528466 C G F5 Missense_Mutation p.D219H 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 1 17046578 17046578 G A ESPNP RNA 0.10 TCGA-DK-A3WW-01 1 172560143 172560143 G C SUCO Missense_Mutation p.E949Q 0.21 deleterious(0) probably_damaging(0.956) TCGA-DK-A3WW-01 1 17328531 17328531 C T ATP13A2 Missense_Mutation p.E235K 0.32 deleterious(0) benign(0.127) TCGA-DK-A3WW-01 1 176998854 176998854 C A ASTN1 Nonsense_Mutation p.E346* 0.37 TCGA-DK-A3WW-01 1 179526245 179526245 G A NPHS2 Nonsense_Mutation p.Q219* 0.14 TCGA-DK-A3WW-01 1 179526363 179526363 G A NPHS2 Silent p.I179I 0.25 TCGA-DK-A3WW-01 1 185143554 185143554 C T SWT1 Missense_Mutation p.S92L 0.14 tolerated(0.07) benign(0.037) TCGA-DK-A3WW-01 1 186320521 186320521 G C TPR Missense_Mutation p.L851V 0.21 benign(0.364) TCGA-DK-A3WW-01 1 18661423 18661423 G T IGSF21 Nonsense_Mutation p.E115* 0.28 TCGA-DK-A3WW-01 1 198225575 198225575 G C NEK7 Intron 0.09 TCGA-DK-A3WW-01 1 200377314 200377314 G C ZNF281 Nonsense_Mutation p.S507* 0.38 TCGA-DK-A3WW-01 1 200880791 200880791 C T C1orf106 Silent p.P390P 0.29 TCGA-DK-A3WW-01 1 201017798 201017798 C T CACNA1S Missense_Mutation p.M1451I 0.21 deleterious(0) probably_damaging(0.949) TCGA-DK-A3WW-01 1 201019552 201019552 G C CACNA1S Missense_Mutation p.F1402L 0.33 deleterious(0) possibly_damaging(0.716) TCGA-DK-A3WW-01 1 201079390 201079390 C G CACNA1S Missense_Mutation p.E54Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 1 202092471 202092471 C G GPR37L1 Missense_Mutation p.S127C 0.23 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 1 203274737 203274737 G A BTG2 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0.05) benign(0.006) TCGA-DK-A3WW-01 1 203667470 203667470 G A ATP2B4 Missense_Mutation p.E127K 0.27 tolerated(0.42) benign(0.096) TCGA-DK-A3WW-01 1 205280856 205280856 G A NUAK2 Missense_Mutation p.P110L 0.18 deleterious(0) probably_damaging(0.955) TCGA-DK-A3WW-01 1 206904055 206904055 G A MAPKAPK2 Silent p.E238E 0.26 TCGA-DK-A3WW-01 1 206944333 206944333 C T IL10 Silent p.E99E 0.26 TCGA-DK-A3WW-01 1 207651346 207651346 G T CR2 Nonsense_Mutation p.E1007* 0.20 TCGA-DK-A3WW-01 1 207651410 207651410 G T CR2 Missense_Mutation p.R1028I 0.16 deleterious(0) benign(0.033) TCGA-DK-A3WW-01 1 207966935 207966935 G T CD46 Nonstop_Mutation p.*400Lext*29 0.27 TCGA-DK-A3WW-01 1 208062850 208062850 C T CD34 Silent p.V238V 0.22 TCGA-DK-A3WW-01 1 209805953 209805953 G A LAMB3 Missense_Mutation p.S266F 0.28 tolerated(0.28) benign(0.285) TCGA-DK-A3WW-01 1 210273593 210273593 G C SYT14 Missense_Mutation p.Q362H 0.27 deleterious(0) possibly_damaging(0.511) TCGA-DK-A3WW-01 1 21100116 21100116 G C HP1BP3 Intron 0.22 TCGA-DK-A3WW-01 1 212180677 212180677 G C INTS7 Missense_Mutation p.S224C 0.23 tolerated(0.12) benign(0.045) TCGA-DK-A3WW-01 1 212274365 212274365 G A DTL Missense_Mutation p.R678Q 0.19 tolerated(0.74) benign(0.012) TCGA-DK-A3WW-01 1 213414278 213414278 G A RPS6KC1 Missense_Mutation p.E487K 0.21 deleterious(0.01) benign(0.119) TCGA-DK-A3WW-01 1 217784238 217784238 G A GPATCH2 Silent p.S337S 0.26 TCGA-DK-A3WW-01 1 21795329 21795329 C G NBPF3 Silent p.L94L 0.23 TCGA-DK-A3WW-01 1 220101335 220101335 G A SLC30A10 Missense_Mutation p.R150C 0.40 tolerated(0.08) possibly_damaging(0.75) TCGA-DK-A3WW-01 1 220752866 220752866 C T MARK1 Silent p.V74V 0.14 TCGA-DK-A3WW-01 1 22203044 22203044 G A HSPG2 Silent p.V929V 0.25 TCGA-DK-A3WW-01 1 223163986 223163986 G A DISP1 Missense_Mutation p.D187N 0.25 tolerated(0.08) benign(0.005) TCGA-DK-A3WW-01 1 223536710 223536710 G A SUSD4 Nonsense_Mutation p.Q20* 0.15 TCGA-DK-A3WW-01 1 224345239 224345239 G C FBXO28 Missense_Mutation p.D300H 0.16 deleterious(0.01) possibly_damaging(0.819) TCGA-DK-A3WW-01 1 224345339 224345339 G C FBXO28 Missense_Mutation p.G333A 0.19 tolerated(0.12) benign(0.264) TCGA-DK-A3WW-01 1 225152266 225152266 G A DNAH14 Silent p.L151L 0.15 TCGA-DK-A3WW-01 1 227204633 227204633 C G CDC42BPA Missense_Mutation p.Q1543H 0.22 deleterious(0) probably_damaging(0.967) TCGA-DK-A3WW-01 1 227921778 227921778 G T SNAP47 5'Flank 0.15 TCGA-DK-A3WW-01 1 22832611 22832611 G A ZBTB40 Missense_Mutation p.E413K 0.12 tolerated(0.09) unknown(0) TCGA-DK-A3WW-01 1 228475825 228475825 C T OBSCN Missense_Mutation p.T3721M 0.30 benign(0.366) TCGA-DK-A3WW-01 1 229567842 229567842 G T ACTA1 Missense_Mutation p.S236Y 0.25 deleterious_low_confidence(0.01) benign(0.06) TCGA-DK-A3WW-01 1 229779297 229779297 C T URB2 Nonsense_Mutation p.Q1218* 0.20 TCGA-DK-A3WW-01 1 230314024 230314024 G C GALNT2 Missense_Mutation p.E63Q 0.14 tolerated(0.29) benign(0.002) TCGA-DK-A3WW-01 1 233344284 233344284 G A PCNXL2 Missense_Mutation p.S948L 0.26 tolerated(0.7) benign(0.002) TCGA-DK-A3WW-01 1 235277211 235277211 C T TOMM20 Missense_Mutation p.G89S 0.30 deleterious(0.04) probably_damaging(0.931) TCGA-DK-A3WW-01 1 235826217 235826217 G C LYST 3'UTR 0.26 TCGA-DK-A3WW-01 1 23636932 23636932 C G HNRNPR 3'UTR 0.23 TCGA-DK-A3WW-01 1 237619914 237619914 C T RYR2 Silent p.L497L 0.17 TCGA-DK-A3WW-01 1 237872347 237872347 G A RYR2 Missense_Mutation p.R3364K 0.31 possibly_damaging(0.77) TCGA-DK-A3WW-01 1 24201626 24201626 G A CNR2 Missense_Mutation p.S161L 0.25 deleterious(0.02) benign(0.345) TCGA-DK-A3WW-01 1 243433447 243433447 G A SDCCAG8 Silent p.L36L 0.20 TCGA-DK-A3WW-01 1 243727132 243727132 C G AKT3 Missense_Mutation p.D280H 0.25 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 1 245765916 245765916 G C KIF26B Missense_Mutation p.R463P 0.29 tolerated(0.29) unknown(0) TCGA-DK-A3WW-01 1 247150204 247150204 C T ZNF695 3'UTR 0.22 TCGA-DK-A3WW-01 1 248085113 248085113 C G OR2T8 Missense_Mutation p.S265C 0.24 deleterious(0) probably_damaging(0.992) TCGA-DK-A3WW-01 1 249106497 249106497 G A SH3BP5L Missense_Mutation p.R262C 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-DK-A3WW-01 1 27683551 27683551 C A MAP3K6 Missense_Mutation p.D1105Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 1 28833897 28833897 G A SNORA73B 5'Flank 0.24 TCGA-DK-A3WW-01 1 29189416 29189416 C T OPRD1 Missense_Mutation p.S247L 0.29 deleterious(0.01) probably_damaging(0.938) TCGA-DK-A3WW-01 1 31210457 31210457 G C LAPTM5 Missense_Mutation p.I200M 0.31 deleterious(0.01) possibly_damaging(0.766) TCGA-DK-A3WW-01 1 32508200 32508200 G C KHDRBS1 Missense_Mutation p.R436T 0.30 deleterious(0) probably_damaging(0.916) TCGA-DK-A3WW-01 1 32671825 32671825 G A IQCC Missense_Mutation p.R118Q 0.25 tolerated(0.56) benign(0.001) TCGA-DK-A3WW-01 1 32673000 32673000 G C IQCC Missense_Mutation p.E320Q 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.871) TCGA-DK-A3WW-01 1 32828367 32828367 C G TSSK3 Nonsense_Mutation p.S22* 0.24 TCGA-DK-A3WW-01 1 33138099 33138099 G A RBBP4 Missense_Mutation p.D339N 0.41 deleterious(0.02) probably_damaging(0.956) TCGA-DK-A3WW-01 1 33149454 33149454 G C RBBP4 3'UTR 0.13 TCGA-DK-A3WW-01 1 3348546 3348546 G T PRDM16 Nonsense_Mutation p.E1180* 0.19 TCGA-DK-A3WW-01 1 33764693 33764693 C T ZNF362 3'UTR 0.24 TCGA-DK-A3WW-01 1 35370141 35370141 C T DLGAP3 Missense_Mutation p.E282K 0.19 tolerated(0.73) benign(0.018) TCGA-DK-A3WW-01 1 36475127 36475127 C G AGO3 Missense_Mutation p.Q361E 0.27 deleterious(0) possibly_damaging(0.817) TCGA-DK-A3WW-01 1 36641826 36641826 G C MAP7D1 Missense_Mutation p.E293Q 0.15 probably_damaging(0.999) TCGA-DK-A3WW-01 1 3679963 3679963 G C CCDC27 Missense_Mutation p.E416Q 0.30 deleterious(0.04) possibly_damaging(0.859) TCGA-DK-A3WW-01 1 36933742 36933742 C T CSF3R Missense_Mutation p.E553K 0.26 deleterious(0.01) possibly_damaging(0.905) TCGA-DK-A3WW-01 1 39500244 39500246 CCT - NDUFS5 3'UTR 0.30 TCGA-DK-A3WW-01 1 40313303 40313303 G A TRIT1 Missense_Mutation p.S282L 0.29 deleterious(0.03) probably_damaging(1) TCGA-DK-A3WW-01 1 41006357 41006357 G A ZNF684 Missense_Mutation p.E39K 0.23 deleterious(0) benign(0.119) TCGA-DK-A3WW-01 1 43308331 43308331 G C ERMAP Missense_Mutation p.E286Q 0.17 tolerated(0.06) benign(0.284) TCGA-DK-A3WW-01 1 45244124 45244124 G C RPS8 Intron 0.24 TCGA-DK-A3WW-01 1 45809319 45809319 C T TOE1 Missense_Mutation p.S493F 0.23 deleterious(0) possibly_damaging(0.841) TCGA-DK-A3WW-01 1 45811142 45811142 G C TESK2 Missense_Mutation p.I362M 0.19 deleterious(0.03) possibly_damaging(0.522) TCGA-DK-A3WW-01 1 45811226 45811226 G A TESK2 Silent p.L334L 0.19 TCGA-DK-A3WW-01 1 46715746 46715746 G C RAD54L Missense_Mutation p.L55F 0.24 deleterious(0.04) probably_damaging(0.98) TCGA-DK-A3WW-01 1 47366083 47366083 T G CYP4Z2P RNA 0.19 TCGA-DK-A3WW-01 1 50884475 50884475 G A DMRTA2 Silent p.F497F 0.33 TCGA-DK-A3WW-01 1 52258060 52258060 C G NRD1 Missense_Mutation p.E1006Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-DK-A3WW-01 1 52941198 52941198 G A ZCCHC11 Missense_Mutation p.S678L 0.27 deleterious(0) possibly_damaging(0.772) TCGA-DK-A3WW-01 1 53540288 53540288 G C PODN Missense_Mutation p.E187D 0.22 tolerated(1) benign(0.051) TCGA-DK-A3WW-01 1 54665846 54665846 C T MRPL37 5'UTR 0.30 TCGA-DK-A3WW-01 1 59042364 59042364 G A TACSTD2 Silent p.L155L 0.23 TCGA-DK-A3WW-01 1 59844459 59844459 C A FGGY Missense_Mutation p.F168L 0.19 tolerated(0.15) benign(0.386) TCGA-DK-A3WW-01 1 62483543 62483543 C T INADL Silent p.L1295L 0.31 TCGA-DK-A3WW-01 1 6727843 6727843 C T DNAJC11 Missense_Mutation p.E102K 0.26 deleterious(0) probably_damaging(0.95) TCGA-DK-A3WW-01 1 78269066 78269066 C G FAM73A Nonsense_Mutation p.S162* 0.21 TCGA-DK-A3WW-01 1 8399747 8399747 C T SLC45A1 Nonsense_Mutation p.Q657* 0.22 TCGA-DK-A3WW-01 1 86952367 86952367 C T CLCA1 Silent p.L371L 0.27 TCGA-DK-A3WW-01 1 92177859 92177859 G C TGFBR3 Missense_Mutation p.L703V 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 1 92752071 92752071 G A GLMN Silent p.F237F 0.28 TCGA-DK-A3WW-01 1 92752143 92752143 G A GLMN Silent p.F213F 0.25 TCGA-DK-A3WW-01 1 92979392 92979392 C T EVI5 Missense_Mutation p.E752K 0.17 tolerated_low_confidence(0.38) benign(0.397) TCGA-DK-A3WW-01 1 94668138 94668138 C G ARHGAP29 Missense_Mutation p.E369Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 1 97915689 97915689 C T DPYD Missense_Mutation p.E611K 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 1 98186463 98186463 G C DPYD Intron 0.24 TCGA-DK-A3WW-01 20 21492922 21492922 G T NKX2-2 Nonsense_Mutation p.S154* 0.19 TCGA-DK-A3WW-01 20 22562719 22562719 G A FOXA2 Silent p.L387L 0.28 TCGA-DK-A3WW-01 20 3102035 3102035 G A UBOX5 Missense_Mutation p.S417L 0.20 deleterious(0.01) probably_damaging(0.922) TCGA-DK-A3WW-01 20 31022245 31022245 C G ASXL1 Nonsense_Mutation p.S577* 0.15 TCGA-DK-A3WW-01 20 33439105 33439105 C T GGT7 Missense_Mutation p.E552K 0.29 tolerated(0.83) benign(0.076) TCGA-DK-A3WW-01 20 33440073 33440073 G A GGT7 Missense_Mutation p.S491F 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 20 33874440 33874440 G C FAM83C Silent p.V714V 0.27 TCGA-DK-A3WW-01 20 34065849 34065849 G T CEP250 Nonsense_Mutation p.E673* 0.10 TCGA-DK-A3WW-01 20 34065861 34065861 G C CEP250 Missense_Mutation p.E677Q 0.10 benign(0.099) TCGA-DK-A3WW-01 20 34065903 34065903 G T CEP250 Nonsense_Mutation p.E691* 0.10 TCGA-DK-A3WW-01 20 34261595 34261595 G C NFS1 Missense_Mutation p.S383C 0.21 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 20 34262520 34262520 G C NFS1 Nonsense_Mutation p.S323* 0.18 TCGA-DK-A3WW-01 20 35929739 35929739 G A MANBAL Missense_Mutation p.G25R 0.21 deleterious(0.05) probably_damaging(1) TCGA-DK-A3WW-01 20 37357157 37357157 C G SLC32A1 Missense_Mutation p.L485V 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A3WW-01 20 3765738 3765738 C T CENPB Missense_Mutation p.E465K 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-DK-A3WW-01 20 42088739 42088739 G T SRSF6 Missense_Mutation p.V150L 0.16 deleterious(0.03) possibly_damaging(0.897) TCGA-DK-A3WW-01 20 42088812 42088812 G C SRSF6 Missense_Mutation p.R174T 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 20 44003758 44003758 G A TP53TG5 Missense_Mutation p.S230F 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 20 44573623 44573623 G C PCIF1 Silent p.R374R 0.16 TCGA-DK-A3WW-01 20 44574946 44574946 C T PCIF1 Silent p.F512F 0.25 TCGA-DK-A3WW-01 20 45130355 45130355 C T ZNF334 Silent p.E541E 0.20 TCGA-DK-A3WW-01 20 47706100 47706100 G A CSE1L Silent p.V666V 0.16 TCGA-DK-A3WW-01 20 50418832 50418832 G A SALL4 Missense_Mutation p.A39V 0.19 tolerated(0.17) benign(0.004) TCGA-DK-A3WW-01 20 57245657 57245657 C T STX16 Missense_Mutation p.R216W 0.23 deleterious(0) benign(0.339) TCGA-DK-A3WW-01 20 58330240 58330240 C T PHACTR3 Missense_Mutation p.A121V 0.23 tolerated(0.23) benign(0.05) TCGA-DK-A3WW-01 20 5924580 5924580 G C TRMT6 Intron 0.17 TCGA-DK-A3WW-01 20 61439527 61439527 G A OGFR Intron 0.21 TCGA-DK-A3WW-01 20 61439537 61439537 G A OGFR Intron 0.29 TCGA-DK-A3WW-01 20 61524224 61524224 C G DIDO1 Missense_Mutation p.Q1064H 0.21 probably_damaging(0.999) TCGA-DK-A3WW-01 20 62127331 62127331 C G EEF1A2 Missense_Mutation p.E68Q 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A3WW-01 20 62275251 62275251 G C STMN3 Nonsense_Mutation p.S50* 0.21 TCGA-DK-A3WW-01 20 62571319 62571319 C T UCKL1 3'UTR 0.19 TCGA-DK-A3WW-01 20 62859375 62859375 C T MYT1 Intron 0.20 TCGA-DK-A3WW-01 20 7964486 7964486 C G TMX4 Missense_Mutation p.E212Q 0.20 deleterious(0.01) probably_damaging(0.942) TCGA-DK-A3WW-01 21 30723959 30723959 C T BACH1-IT1 RNA 0.17 TCGA-DK-A3WW-01 21 31538639 31538639 G C CLDN17 Missense_Mutation p.I99M 0.31 deleterious(0.05) probably_damaging(0.951) TCGA-DK-A3WW-01 21 33651219 33651219 G C MIS18A Missense_Mutation p.S36C 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-DK-A3WW-01 21 34133456 34133456 C G PAXBP1 Missense_Mutation p.D297H 0.24 deleterious(0) probably_damaging(0.979) TCGA-DK-A3WW-01 21 35743045 35743045 G C KCNE2 Missense_Mutation p.E90Q 0.25 tolerated(0.2) benign(0.053) TCGA-DK-A3WW-01 21 37617591 37617591 G C DOPEY2 Missense_Mutation p.D1105H 0.17 deleterious(0) possibly_damaging(0.671) TCGA-DK-A3WW-01 21 37617864 37617864 G A DOPEY2 Missense_Mutation p.E1196K 0.23 deleterious(0) possibly_damaging(0.591) TCGA-DK-A3WW-01 21 37618604 37618604 G A DOPEY2 Silent p.L1442L 0.27 TCGA-DK-A3WW-01 21 37618697 37618697 G C DOPEY2 Missense_Mutation p.Q1473H 0.20 deleterious(0.04) possibly_damaging(0.841) TCGA-DK-A3WW-01 21 37620841 37620841 C G DOPEY2 Missense_Mutation p.S1658C 0.20 deleterious(0) benign(0.033) TCGA-DK-A3WW-01 21 37717293 37717293 C T MORC3 Silent p.L323L 0.25 TCGA-DK-A3WW-01 21 41561016 41561016 G C DSCAM Missense_Mutation p.L836V 0.24 tolerated(0.59) benign(0.004) TCGA-DK-A3WW-01 21 42845282 42845282 C T TMPRSS2 Nonsense_Mutation p.W327* 0.29 TCGA-DK-A3WW-01 21 44192610 44192610 G C PDE9A Missense_Mutation p.R583T 0.27 tolerated_low_confidence(0.23) benign(0.004) TCGA-DK-A3WW-01 21 45548494 45548494 G A PWP2 Missense_Mutation p.D858N 0.18 tolerated(0.1) benign(0.077) TCGA-DK-A3WW-01 21 46047228 46047228 G A KRTAP10-9 Missense_Mutation p.C47Y 0.19 deleterious(0.03) unknown(0) TCGA-DK-A3WW-01 21 46596309 46596309 G A ADARB1 Silent p.P231P 0.20 TCGA-DK-A3WW-01 21 47851626 47851626 G C PCNT Missense_Mutation p.E2750Q 0.14 possibly_damaging(0.727) TCGA-DK-A3WW-01 22 19137311 19137311 C A GSC2 Silent p.T126T 0.26 TCGA-DK-A3WW-01 22 21384215 21384215 C T SLC7A4 Missense_Mutation p.D470N 0.24 tolerated(0.22) benign(0.002) TCGA-DK-A3WW-01 22 26176157 26176157 C G MYO18B Missense_Mutation p.Q735E 0.21 deleterious(0.03) possibly_damaging(0.737) TCGA-DK-A3WW-01 22 29707904 29707904 C T GAS2L1 3'UTR 0.27 TCGA-DK-A3WW-01 22 30822740 30822740 C T MTFP1 Missense_Mutation p.L35F 0.22 deleterious(0.04) benign(0.021) TCGA-DK-A3WW-01 22 31302219 31302219 G C OSBP2 Missense_Mutation p.E882Q 0.29 deleterious(0.03) probably_damaging(0.944) TCGA-DK-A3WW-01 22 36718556 36718556 T C MYH9 Missense_Mutation p.E208G 0.35 probably_damaging(1) TCGA-DK-A3WW-01 22 36718557 36718557 C T MYH9 Missense_Mutation p.E208K 0.35 probably_damaging(1) TCGA-DK-A3WW-01 22 41513766 41513766 C T EP300 Nonsense_Mutation p.Q224* 0.33 TCGA-DK-A3WW-01 22 41547924 41547924 G T EP300 Nonsense_Mutation p.E969* 0.21 TCGA-DK-A3WW-01 22 41573148 41573148 G T EP300 Missense_Mutation p.Q1811H 0.24 benign(0.003) TCGA-DK-A3WW-01 22 42372980 42372980 G A SEPT3 5'UTR 0.31 TCGA-DK-A3WW-01 22 42372983 42372983 C T SEPT3 5'UTR 0.28 TCGA-DK-A3WW-01 22 42463781 42463781 G A NAGA Silent p.F104F 0.24 TCGA-DK-A3WW-01 22 42606970 42606970 C G TCF20 Missense_Mutation p.E1448Q 0.24 benign(0.26) TCGA-DK-A3WW-01 22 43204836 43204836 C A ARFGAP3 Missense_Mutation p.K419N 0.27 deleterious(0) possibly_damaging(0.846) TCGA-DK-A3WW-01 22 43634787 43634787 G A SCUBE1 Intron 0.27 TCGA-DK-A3WW-01 22 44342253 44342253 G A PNPLA3 Silent p.K479K 0.23 TCGA-DK-A3WW-01 22 44395417 44395417 G T PARVB Missense_Mutation p.R25S 0.26 tolerated_low_confidence(0.46) benign(0) TCGA-DK-A3WW-01 22 47307990 47307990 C T TBC1D22A Silent p.F307F 0.28 TCGA-DK-A3WW-01 22 50277808 50277808 G A ZBED4 Silent p.P166P 0.22 TCGA-DK-A3WW-01 22 50753332 50753332 C G DENND6B Silent p.L259L 0.26 TCGA-DK-A3WW-01 22 51063878 51063878 C T ARSA Missense_Mutation p.D409N 0.55 tolerated(0.26) benign(0.111) TCGA-DK-A3WW-01 2 10269561 10269561 C G RRM2 3'UTR 0.20 TCGA-DK-A3WW-01 2 105954067 105954067 G A C2orf49 Missense_Mutation p.R8H 0.29 tolerated(0.17) probably_damaging(0.999) TCGA-DK-A3WW-01 2 107040069 107040069 C G RGPD3 Missense_Mutation p.D1452H 0.12 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 2 109381763 109381763 G A RANBP2 Missense_Mutation p.E1590K 0.25 tolerated(0.14) benign(0.014) TCGA-DK-A3WW-01 2 109411132 109411132 C G CCDC138 Missense_Mutation p.I177M 0.20 deleterious(0) possibly_damaging(0.506) TCGA-DK-A3WW-01 2 111425410 111425410 C G BUB1 Missense_Mutation p.G195A 0.15 tolerated(0.35) benign(0.01) TCGA-DK-A3WW-01 2 113590374 113590374 C T IL1B Missense_Mutation p.E111K 0.23 tolerated(0.42) benign(0.001) TCGA-DK-A3WW-01 2 113676180 113676180 C T IL37 Missense_Mutation p.R151C 0.20 tolerated(0.21) benign(0.028) TCGA-DK-A3WW-01 2 114340656 114340656 C G MIR1302-3 RNA 0.19 TCGA-DK-A3WW-01 2 11586617 11586617 C A E2F6 Nonsense_Mutation p.E278* 0.24 TCGA-DK-A3WW-01 2 121740439 121740439 C G GLI2 Missense_Mutation p.R556G 0.16 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 2 122004422 122004422 G A TFCP2L1 Missense_Mutation p.S210L 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A3WW-01 2 128253659 128253659 C T IWS1 Missense_Mutation p.R544K 0.23 deleterious(0.04) possibly_damaging(0.608) TCGA-DK-A3WW-01 2 128939716 128939716 G A UGGT1 Missense_Mutation p.D1366N 0.25 deleterious(0.04) probably_damaging(1) TCGA-DK-A3WW-01 2 130922009 130922009 C T SMPD4 Missense_Mutation p.E307K 0.29 deleterious(0) possibly_damaging(0.801) TCGA-DK-A3WW-01 2 131840225 131840225 C T FAM168B 5'UTR 0.20 TCGA-DK-A3WW-01 2 133539884 133539884 C T NCKAP5 Silent p.Q1500Q 0.27 TCGA-DK-A3WW-01 2 152468834 152468834 C G NEB Missense_Mutation p.E3891Q 0.16 possibly_damaging(0.497) TCGA-DK-A3WW-01 2 153399292 153399292 C G FMNL2 Missense_Mutation p.Q81E 0.23 benign(0.054) TCGA-DK-A3WW-01 2 160050816 160050816 G A TANC1 Missense_Mutation p.E931K 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 2 160050867 160050867 G A TANC1 Missense_Mutation p.E948K 0.22 tolerated(0.81) possibly_damaging(0.802) TCGA-DK-A3WW-01 2 160599728 160599728 G A MARCH7 Missense_Mutation p.G104R 0.32 tolerated(0.36) benign(0.323) TCGA-DK-A3WW-01 2 161052112 161052112 G A ITGB6 Silent p.L121L 0.19 TCGA-DK-A3WW-01 2 163360985 163360985 G A KCNH7 Nonsense_Mutation p.R366* 0.21 TCGA-DK-A3WW-01 2 166020150 166020150 C G SCN3A Silent p.L224L 0.33 TCGA-DK-A3WW-01 2 166747063 166747063 C G TTC21B Missense_Mutation p.M1063I 0.27 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 2 167159651 167159651 C T SCN9A Missense_Mutation p.E284K 0.23 tolerated(0.75) benign(0.01) TCGA-DK-A3WW-01 2 170606109 170606109 G T KLHL23 Missense_Mutation p.G515V 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 2 171806117 171806117 C G GORASP2 Missense_Mutation p.I71M 0.23 deleterious(0) benign(0.199) TCGA-DK-A3WW-01 2 172803292 172803292 C G HAT1 Silent p.L59L 0.28 TCGA-DK-A3WW-01 2 174131031 174131031 C G MLTK Silent p.L652L 0.18 TCGA-DK-A3WW-01 2 175673765 175673765 C T CHN1 Missense_Mutation p.E324K 0.20 tolerated(0.08) probably_damaging(0.989) TCGA-DK-A3WW-01 2 179368639 179368639 C G PLEKHA3 3'UTR 0.21 TCGA-DK-A3WW-01 2 179399910 179399910 G A TTN Missense_Mutation p.S33811L 0.23 TCGA-DK-A3WW-01 2 179478785 179478785 G A TTN Nonsense_Mutation p.Q16447* 0.29 TCGA-DK-A3WW-01 2 1795702 1795702 C G MYT1L Missense_Mutation p.Q1164H 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-DK-A3WW-01 2 179640629 179640629 C T TTN Missense_Mutation p.E1988K 0.21 TCGA-DK-A3WW-01 2 180348114 180348114 G C ZNF385B Silent p.V185V 0.14 TCGA-DK-A3WW-01 2 186671526 186671526 C T FSIP2 Silent p.L5920L 0.18 TCGA-DK-A3WW-01 2 191854376 191854376 C T STAT1 Silent p.L354L 0.44 TCGA-DK-A3WW-01 2 197157303 197157303 C T HECW2 Missense_Mutation p.D996N 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A3WW-01 2 198353941 198353941 G A HSPD1 Missense_Mutation p.L334F 0.32 deleterious(0.01) probably_damaging(0.935) TCGA-DK-A3WW-01 2 20101661 20101661 G A TTC32 5'UTR 0.25 TCGA-DK-A3WW-01 2 201760084 201760084 C T NIF3L1 Nonsense_Mutation p.Q233* 0.23 TCGA-DK-A3WW-01 2 201768234 201768234 G A NIF3L1 Missense_Mutation p.D323N 0.24 tolerated(0.05) possibly_damaging(0.513) TCGA-DK-A3WW-01 2 202139648 202139648 C G CASP8 Missense_Mutation p.S270C 0.32 tolerated(0.2) benign(0.013) TCGA-DK-A3WW-01 2 202430471 202430471 G C ALS2CR11 Missense_Mutation p.Q320E 0.25 deleterious(0.04) benign(0.006) TCGA-DK-A3WW-01 2 203847053 203847053 G C CARF Missense_Mutation p.E650Q 0.17 tolerated_low_confidence(0.22) benign(0.014) TCGA-DK-A3WW-01 2 204002904 204002904 G C NBEAL1 Missense_Mutation p.E1500Q 0.26 tolerated(0.1) probably_damaging(0.911) TCGA-DK-A3WW-01 2 204354725 204354725 G A RAPH1 Missense_Mutation p.S105L 0.21 benign(0.114) TCGA-DK-A3WW-01 2 204354805 204354805 C T RAPH1 Silent p.L78L 0.17 TCGA-DK-A3WW-01 2 206166207 206166207 C T PARD3B Silent p.S742S 0.28 TCGA-DK-A3WW-01 2 206882459 206882459 G A INO80D Missense_Mutation p.P496L 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 2 207169625 207169625 C G ZDBF2 Missense_Mutation p.Q125E 0.25 deleterious(0.01) benign(0.042) TCGA-DK-A3WW-01 2 207559580 207559580 G C DYTN Silent p.L247L 0.26 TCGA-DK-A3WW-01 2 209203277 209203277 C T PIKFYVE Nonsense_Mutation p.Q1553* 0.17 TCGA-DK-A3WW-01 2 211476905 211476905 C G CPS1 Missense_Mutation p.S825C 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A3WW-01 2 211513244 211513244 G C CPS1 Missense_Mutation p.L1134F 0.21 deleterious(0) probably_damaging(0.992) TCGA-DK-A3WW-01 2 215875150 215875150 C G ABCA12 Missense_Mutation p.A793P 0.26 deleterious(0.05) possibly_damaging(0.885) TCGA-DK-A3WW-01 2 217341900 217341900 C A SMARCAL1 Silent p.L832L 0.18 TCGA-DK-A3WW-01 2 218674590 218674590 G C TNS1 Missense_Mutation p.F1639L 0.23 deleterious(0.01) benign(0.031) TCGA-DK-A3WW-01 2 219114098 219114098 C T ARPC2 Missense_Mutation p.R230C 0.26 deleterious(0.02) benign(0.237) TCGA-DK-A3WW-01 2 220022967 220022967 C T NHEJ1 Missense_Mutation p.D40N 0.21 deleterious(0.01) benign(0.077) TCGA-DK-A3WW-01 2 220032963 220032963 G C SLC23A3 Nonsense_Mutation p.S259* 0.24 TCGA-DK-A3WW-01 2 220046485 220046485 G A FAM134A Missense_Mutation p.D335N 0.19 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 2 220085587 220085587 G C ATG9A Missense_Mutation p.S799C 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-DK-A3WW-01 2 220474164 220474164 G A STK11IP Missense_Mutation p.R680K 0.17 tolerated(0.36) benign(0.225) TCGA-DK-A3WW-01 2 220502408 220502408 G A SLC4A3 Missense_Mutation p.E908K 0.25 tolerated(0.84) benign(0.031) TCGA-DK-A3WW-01 2 223169063 223169063 G A CCDC140 Missense_Mutation p.E148K 0.19 deleterious_low_confidence(0) unknown(0) TCGA-DK-A3WW-01 2 225666692 225666692 C T DOCK10 Missense_Mutation p.R1445Q 0.21 deleterious(0.05) probably_damaging(0.97) TCGA-DK-A3WW-01 2 227898175 227898175 C G COL4A4 Silent p.L1176L 0.23 TCGA-DK-A3WW-01 2 228552052 228552052 C G SLC19A3 3'UTR 0.23 TCGA-DK-A3WW-01 2 230723619 230723619 G A TRIP12 Missense_Mutation p.S257F 0.24 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-DK-A3WW-01 2 231379918 231379918 G A SP100 Intron 0.24 TCGA-DK-A3WW-01 2 232100023 232100023 G A ARMC9 Missense_Mutation p.D237N 0.21 deleterious(0) probably_damaging(0.989) TCGA-DK-A3WW-01 2 232143143 232143143 C A ARMC9 Nonsense_Mutation p.S508* 0.27 TCGA-DK-A3WW-01 2 234343511 234343511 C G DGKD Missense_Mutation p.L184V 0.22 deleterious(0.01) possibly_damaging(0.654) TCGA-DK-A3WW-01 2 234621763 234621763 C G UGT1A5 Silent p.L42L 0.23 TCGA-DK-A3WW-01 2 235404739 235404739 G A ARL4C Silent p.I164I 0.24 TCGA-DK-A3WW-01 2 235962340 235962340 G A SH3BP4 Missense_Mutation p.M924I 0.24 deleterious(0.03) possibly_damaging(0.857) TCGA-DK-A3WW-01 2 240984886 240984886 G C OR6B3 Missense_Mutation p.L202V 0.18 tolerated(0.1) benign(0.068) TCGA-DK-A3WW-01 2 241570332 241570332 C A GPR35 3'UTR 0.22 TCGA-DK-A3WW-01 2 24239769 24239769 G A MFSD2B Silent p.L134L 0.18 TCGA-DK-A3WW-01 2 242594013 242594013 C G ATG4B Silent p.L112L 0.31 TCGA-DK-A3WW-01 2 24524067 24524067 G A ITSN2 Missense_Mutation p.S346L 0.33 tolerated(0.4) benign(0.092) TCGA-DK-A3WW-01 2 24929894 24929894 G A NCOA1 Missense_Mutation p.V519I 0.23 tolerated(0.08) benign(0.004) TCGA-DK-A3WW-01 2 25457247 25457247 C T DNMT3A Missense_Mutation p.M880I 0.33 tolerated(0.09) probably_damaging(0.963) TCGA-DK-A3WW-01 2 27440385 27440385 C T CAD 5'UTR 0.26 TCGA-DK-A3WW-01 2 27676285 27676285 C G IFT172 Missense_Mutation p.G1306A 0.18 tolerated(0.75) benign(0.002) TCGA-DK-A3WW-01 2 27700949 27700949 C T IFT172 Silent p.V360V 0.26 TCGA-DK-A3WW-01 2 32620589 32620589 C G BIRC6 Missense_Mutation p.S321C 0.31 possibly_damaging(0.873) TCGA-DK-A3WW-01 2 32678953 32678953 C G BIRC6 Missense_Mutation p.L1566V 0.27 probably_damaging(0.978) TCGA-DK-A3WW-01 2 3481522 3481522 G C TRAPPC12 Missense_Mutation p.Q611H 0.18 tolerated(0.14) benign(0.003) TCGA-DK-A3WW-01 2 37113903 37113903 T A STRN Missense_Mutation p.K333M 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-DK-A3WW-01 2 37458641 37458641 C G CEBPZ Missense_Mutation p.D24H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-DK-A3WW-01 2 39893156 39893156 C G TMEM178A Silent p.L14L 0.21 TCGA-DK-A3WW-01 2 43924477 43924477 G A PLEKHH2 Missense_Mutation p.E224K 0.25 tolerated(0.16) benign(0.001) TCGA-DK-A3WW-01 2 44050022 44050022 C G ABCG5 Missense_Mutation p.Q459H 0.34 tolerated(0.09) benign(0.02) TCGA-DK-A3WW-01 2 45236023 45236023 G C SIX2 Missense_Mutation p.S76W 0.21 deleterious(0) probably_damaging(0.98) TCGA-DK-A3WW-01 2 46609643 46609643 C T EPAS1 Silent p.I789I 0.23 TCGA-DK-A3WW-01 2 46846789 46846789 G A CRIPT Missense_Mutation p.E36K 0.11 deleterious(0.03) probably_damaging(0.943) TCGA-DK-A3WW-01 2 54163918 54163918 G T PSME4 Missense_Mutation p.L248I 0.26 tolerated(0.33) benign(0.065) TCGA-DK-A3WW-01 2 54856469 54856469 C T SPTBN1 Missense_Mutation p.S733L 0.24 deleterious(0) benign(0.044) TCGA-DK-A3WW-01 2 55523455 55523455 C T CCDC88A Missense_Mutation p.G1676E 0.21 deleterious(0) possibly_damaging(0.713) TCGA-DK-A3WW-01 2 55535955 55535955 C G CCDC88A Missense_Mutation p.K1458N 0.33 tolerated(0.1) possibly_damaging(0.543) TCGA-DK-A3WW-01 2 64112904 64112904 G C UGP2 Missense_Mutation p.D253H 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 2 69472775 69472780 GAAAGA T ANTXR1 3'UTR 0.19 TCGA-DK-A3WW-01 2 71883391 71883391 G C DYSF Missense_Mutation p.E1576Q 0.23 deleterious(0.03) possibly_damaging(0.501) TCGA-DK-A3WW-01 2 74743328 74743328 C G TLX2 3'UTR 0.19 TCGA-DK-A3WW-01 2 85768794 85768794 G C MAT2A Missense_Mutation p.E111Q 0.23 deleterious(0.02) benign(0.247) TCGA-DK-A3WW-01 2 85769161 85769161 G C MAT2A Intron 0.30 TCGA-DK-A3WW-01 2 85769217 85769217 G A MAT2A Intron 0.22 TCGA-DK-A3WW-01 2 85769496 85769496 G T MAT2A Missense_Mutation p.Q256H 0.15 tolerated(0.22) benign(0.071) TCGA-DK-A3WW-01 2 85770096 85770096 G A MAT2A Missense_Mutation p.E342K 0.23 deleterious(0.02) benign(0.382) TCGA-DK-A3WW-01 2 85770102 85770102 G C MAT2A Missense_Mutation p.E344Q 0.24 tolerated(0.11) benign(0.108) TCGA-DK-A3WW-01 2 85770125 85770125 G C MAT2A Missense_Mutation p.K351N 0.24 tolerated(0.22) benign(0.004) TCGA-DK-A3WW-01 2 85836187 85836187 C T C2orf68 Missense_Mutation p.D128N 0.28 tolerated(0.1) benign(0.045) TCGA-DK-A3WW-01 2 9546976 9546976 G T ITGB1BP1 Missense_Mutation p.S197Y 0.26 tolerated(0.06) probably_damaging(0.914) TCGA-DK-A3WW-01 2 96557463 96557463 G A ANKRD36C Missense_Mutation p.S357F 0.33 deleterious(0) probably_damaging(0.991) TCGA-DK-A3WW-01 2 97403767 97403767 C T LMAN2L Missense_Mutation p.M75I 0.41 tolerated(0.22) benign(0.079) TCGA-DK-A3WW-01 3 100354473 100354473 G C GPR128 Intron 0.24 TCGA-DK-A3WW-01 3 10382201 10382201 G A ATP2B2 Silent p.I1035I 0.25 TCGA-DK-A3WW-01 3 107524303 107524303 G A BBX Silent p.%3D 0.19 TCGA-DK-A3WW-01 3 108380728 108380728 C T DZIP3 Missense_Mutation p.S735L 0.27 deleterious_low_confidence(0) benign(0.142) TCGA-DK-A3WW-01 3 108403160 108403160 C T DZIP3 Missense_Mutation p.S994F 0.18 deleterious(0.02) benign(0.01) TCGA-DK-A3WW-01 3 108572556 108572556 C G TRAT1 Missense_Mutation p.F131L 0.16 tolerated(1) benign(0) TCGA-DK-A3WW-01 3 108724086 108724086 G C MORC1 Nonsense_Mutation p.S615* 0.12 TCGA-DK-A3WW-01 3 11058933 11058933 G T SLC6A1 Missense_Mutation p.Q12H 0.25 tolerated(0.23) benign(0.002) TCGA-DK-A3WW-01 3 113300209 113300209 G A SIDT1 Missense_Mutation p.C222Y 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 3 113627832 113627832 G A GRAMD1C Missense_Mutation p.E273K 0.26 tolerated(0.19) benign(0.049) TCGA-DK-A3WW-01 3 113955831 113955831 C T ZNF80 Missense_Mutation p.E31K 0.17 tolerated(0.18) benign(0.2) TCGA-DK-A3WW-01 3 118865552 118865552 G C C3orf30 Missense_Mutation p.Q172H 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-DK-A3WW-01 3 119300988 119300988 C T ADPRH 5'UTR 0.34 TCGA-DK-A3WW-01 3 119469912 119469912 G A MAATS1 Missense_Mutation p.E758K 0.20 tolerated_low_confidence(0.27) benign(0.055) TCGA-DK-A3WW-01 3 121207035 121207035 C T POLQ Silent p.K1581K 0.24 TCGA-DK-A3WW-01 3 121354648 121354648 C T HCLS1 Missense_Mutation p.A209T 0.27 deleterious(0) possibly_damaging(0.798) TCGA-DK-A3WW-01 3 121547358 121547358 C T IQCB1 Silent p.Q74Q 0.23 TCGA-DK-A3WW-01 3 121547744 121547744 C G IQCB1 Missense_Mutation p.E22Q 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3WW-01 3 121547781 121547781 C A IQCB1 Missense_Mutation p.R9S 0.13 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 3 123987853 123987853 G A KALRN Silent p.L238L 0.23 TCGA-DK-A3WW-01 3 124393492 124393492 G A KALRN 3'UTR 0.17 TCGA-DK-A3WW-01 3 125637732 125637732 C G FAM86JP RNA 0.13 TCGA-DK-A3WW-01 3 126722265 126722265 C T PLXNA1 Silent p.L490L 0.27 TCGA-DK-A3WW-01 3 128996330 128996330 C T COPG1 3'UTR 0.18 TCGA-DK-A3WW-01 3 130464012 130464012 C G PIK3R4 Missense_Mutation p.E17D 0.25 tolerated(0.39) benign(0.001) TCGA-DK-A3WW-01 3 132051183 132051183 G T ACPP Missense_Mutation p.D151Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 3 13383323 13383323 G A NUP210 Silent p.I1051I 0.20 TCGA-DK-A3WW-01 3 134080563 134080563 C T AMOTL2 Missense_Mutation p.E456K 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A3WW-01 3 135720716 135720716 G C PPP2R3A Missense_Mutation p.E126Q 0.15 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DK-A3WW-01 3 137750109 137750109 C T CLDN18 3'UTR 0.15 TCGA-DK-A3WW-01 3 141161785 141161785 G C ZBTB38 Missense_Mutation p.L185F 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A3WW-01 3 141272699 141272699 C T RASA2 Silent p.H176H 0.21 TCGA-DK-A3WW-01 3 141328358 141328358 G A RASA2 Silent p.K774K 0.39 TCGA-DK-A3WW-01 3 148871318 148871318 G C HPS3 Missense_Mutation p.R428T 0.30 deleterious(0.01) probably_damaging(0.943) TCGA-DK-A3WW-01 3 149205479 149205479 C T TM4SF4 Missense_Mutation p.S113L 0.22 deleterious(0) possibly_damaging(0.696) TCGA-DK-A3WW-01 3 149678634 149678634 G A RNF13 Missense_Mutation p.D297N 0.24 tolerated(0.09) benign(0.064) TCGA-DK-A3WW-01 3 150127514 150127514 C G TSC22D2 Missense_Mutation p.T126S 0.32 tolerated(0.73) benign(0.292) TCGA-DK-A3WW-01 3 150840608 150840608 G A MED12L Silent p.L81L 0.12 TCGA-DK-A3WW-01 3 150840663 150840663 G C MED12L Missense_Mutation p.D100H 0.17 deleterious(0) probably_damaging(0.997) TCGA-DK-A3WW-01 3 151165065 151165065 C T IGSF10 Missense_Mutation p.E902K 0.23 tolerated(0.53) benign(0.003) TCGA-DK-A3WW-01 3 154002700 154002700 C T DHX36 Missense_Mutation p.G703E 0.29 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 3 154862187 154862187 C G MME Missense_Mutation p.Q453E 0.20 tolerated(1) benign(0) TCGA-DK-A3WW-01 3 155571672 155571672 G A SLC33A1 Missense_Mutation p.H39Y 0.26 deleterious(0.05) benign(0) TCGA-DK-A3WW-01 3 156271470 156271470 C T SSR3 Silent p.K78K 0.20 TCGA-DK-A3WW-01 3 160119741 160119741 G A SMC4 Missense_Mutation p.E60K 0.23 deleterious(0.01) possibly_damaging(0.606) TCGA-DK-A3WW-01 3 164712184 164712184 G A SI Missense_Mutation p.P1568S 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 3 164907342 164907342 G A SLITRK3 Missense_Mutation p.S426F 0.22 deleterious(0) probably_damaging(0.959) TCGA-DK-A3WW-01 3 167159970 167159970 G A SERPINI2 Missense_Mutation p.S382L 0.29 deleterious(0) benign(0.062) TCGA-DK-A3WW-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A3WW-01 3 179291249 179291249 G C ACTL6A Missense_Mutation p.E124Q 0.34 deleterious(0) probably_damaging(0.981) TCGA-DK-A3WW-01 3 179533669 179533669 G A PEX5L Nonsense_Mutation p.Q355* 0.24 TCGA-DK-A3WW-01 3 180322650 180322650 G A TTC14 Missense_Mutation p.E238K 0.12 tolerated(0.23) benign(0.147) TCGA-DK-A3WW-01 3 182683333 182683333 C G DCUN1D1 Missense_Mutation p.R71T 0.29 deleterious(0.02) benign(0.027) TCGA-DK-A3WW-01 3 182987774 182987774 C T B3GNT5 Missense_Mutation p.S63F 0.22 tolerated(0.6) possibly_damaging(0.653) TCGA-DK-A3WW-01 3 182987776 182987776 C T B3GNT5 Missense_Mutation p.L64F 0.22 tolerated(0.42) benign(0.157) TCGA-DK-A3WW-01 3 183823613 183823613 C G HTR3E Missense_Mutation p.L287V 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 3 184043095 184043095 C A EIF4G1 Silent p.I972I 0.23 TCGA-DK-A3WW-01 3 185146691 185146691 G C MAP3K13 Missense_Mutation p.E108Q 0.36 tolerated(0.28) benign(0.102) TCGA-DK-A3WW-01 3 185216784 185216784 G C TMEM41A 5'UTR 0.38 TCGA-DK-A3WW-01 3 190105989 190105989 G A CLDN16 Silent p.V27V 0.13 TCGA-DK-A3WW-01 3 193855564 193855564 G C HES1 Missense_Mutation p.E129Q 0.21 deleterious(0) possibly_damaging(0.688) TCGA-DK-A3WW-01 3 196199034 196199034 C T RNF168 Missense_Mutation p.D458N 0.28 tolerated(0.35) benign(0.076) TCGA-DK-A3WW-01 3 21462822 21462822 G A ZNF385D Nonsense_Mutation p.R358* 0.34 TCGA-DK-A3WW-01 3 24018996 24018996 G A NR1D2 3'UTR 0.33 TCGA-DK-A3WW-01 3 25611305 25611305 G A RARB Missense_Mutation p.E169K 0.23 deleterious(0.03) benign(0.197) TCGA-DK-A3WW-01 3 25773930 25773930 C T NGLY1 Silent p.Q435Q 0.30 TCGA-DK-A3WW-01 3 32995455 32995455 G A CCR4 Missense_Mutation p.E181K 0.23 deleterious(0.03) probably_damaging(0.97) TCGA-DK-A3WW-01 3 36587730 36587730 C T STAC Silent p.L386L 0.25 TCGA-DK-A3WW-01 3 36897001 36897001 C A TRANK1 Missense_Mutation p.Q1360H 0.28 deleterious(0.01) benign(0.151) TCGA-DK-A3WW-01 3 36897398 36897398 C G TRANK1 Missense_Mutation p.R1228T 0.34 deleterious(0.01) possibly_damaging(0.884) TCGA-DK-A3WW-01 3 37107346 37107346 G C LRRFIP2 Missense_Mutation p.Q552E 0.25 tolerated(0.07) possibly_damaging(0.9) TCGA-DK-A3WW-01 3 38158112 38158112 C T DLEC1 Missense_Mutation p.S1342F 0.25 deleterious(0.04) benign(0.028) TCGA-DK-A3WW-01 3 38168124 38168124 C T ACAA1 Missense_Mutation p.D232N 0.25 deleterious(0.03) benign(0.025) TCGA-DK-A3WW-01 3 38404477 38404477 C T XYLB Missense_Mutation p.S87F 0.17 deleterious(0) possibly_damaging(0.897) TCGA-DK-A3WW-01 3 40529228 40529228 C T ZNF619 Silent p.F449F 0.21 TCGA-DK-A3WW-01 3 42826734 42826734 C T HIGD1A 3'Flank 0.16 TCGA-DK-A3WW-01 3 44442825 44442825 G C TCAIM Missense_Mutation p.E417Q 0.27 tolerated(0.3) benign(0.366) TCGA-DK-A3WW-01 3 45153662 45153662 C G CDCP1 Missense_Mutation p.E190Q 0.29 tolerated(0.21) probably_damaging(0.942) TCGA-DK-A3WW-01 3 46399402 46399402 C T CCR2 Silent p.I128I 0.22 TCGA-DK-A3WW-01 3 46492002 46492002 G A LTF Missense_Mutation p.L289F 0.26 tolerated(0.42) benign(0.063) TCGA-DK-A3WW-01 3 46753882 46753882 C T PRSS50 Missense_Mutation p.E338K 0.22 tolerated(0.13) benign(0.042) TCGA-DK-A3WW-01 3 47384267 47384267 G C KLHL18 Missense_Mutation p.E429Q 0.28 tolerated(0.36) possibly_damaging(0.588) TCGA-DK-A3WW-01 3 47868907 47868907 C T DHX30 Silent p.L65L 0.28 TCGA-DK-A3WW-01 3 48603971 48603971 C G COL7A1 Missense_Mutation p.R2777P 0.24 probably_damaging(0.998) TCGA-DK-A3WW-01 3 48613150 48613150 C G COL7A1 Missense_Mutation p.W1963S 0.19 unknown(0) TCGA-DK-A3WW-01 3 48884791 48884791 G A PRKAR2A Missense_Mutation p.S80L 0.38 tolerated(0.25) benign(0.054) TCGA-DK-A3WW-01 3 48884887 48884887 G C PRKAR2A Nonsense_Mutation p.S48* 0.33 TCGA-DK-A3WW-01 3 49027929 49027929 C G P4HTM Silent p.L80L 0.29 TCGA-DK-A3WW-01 3 49050213 49050213 C T WDR6 Missense_Mutation p.R446C 0.15 tolerated(0.14) benign(0.002) TCGA-DK-A3WW-01 3 49160696 49160696 G A LAMB2 Missense_Mutation p.R1365W 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 3 49212219 49212219 G C KLHDC8B Missense_Mutation p.D196H 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 3 49569108 49569108 T C DAG1 Silent p.T388T 0.27 TCGA-DK-A3WW-01 3 49770264 49770264 C G IP6K1 Silent p.L192L 0.34 TCGA-DK-A3WW-01 3 52582190 52582190 C T PBRM1 Silent p.L1546L 0.27 TCGA-DK-A3WW-01 3 52620683 52620683 C T PBRM1 Missense_Mutation p.E1024K 0.17 deleterious(0.04) possibly_damaging(0.486) TCGA-DK-A3WW-01 3 52621527 52621527 C G PBRM1 Intron 0.17 TCGA-DK-A3WW-01 3 53908249 53908249 G C ACTR8 Missense_Mutation p.H352D 0.28 deleterious(0.01) possibly_damaging(0.907) TCGA-DK-A3WW-01 3 57545645 57545645 G A PDE12 Missense_Mutation p.E582K 0.25 deleterious(0.01) possibly_damaging(0.771) TCGA-DK-A3WW-01 3 57545863 57545863 G C PDE12 3'UTR 0.33 TCGA-DK-A3WW-01 3 62501761 62501761 G A CADPS Missense_Mutation p.R852W 0.25 deleterious(0) possibly_damaging(0.898) TCGA-DK-A3WW-01 3 65464309 65464309 C T MAGI1 Missense_Mutation p.E239K 0.21 deleterious(0) benign(0.381) TCGA-DK-A3WW-01 3 66433416 66433416 G C LRIG1 Silent p.V827V 0.18 TCGA-DK-A3WW-01 3 67049613 67049613 C T KBTBD8 Silent p.F75F 0.22 TCGA-DK-A3WW-01 3 70005608 70005608 G C MITF Missense_Mutation p.E314Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 3 78649360 78649360 C G ROBO1 Missense_Mutation p.R1615T 0.25 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-DK-A3WW-01 3 8775506 8775506 C T CAV3 5'UTR 0.25 TCGA-DK-A3WW-01 3 9754751 9754751 G A CPNE9 Missense_Mutation p.G213E 0.22 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 3 98109713 98109713 G C OR5K3 Silent p.L68L 0.20 TCGA-DK-A3WW-01 3 9843424 9843424 G A ARPC4 Missense_Mutation p.R124Q 0.13 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 3 9988025 9988025 C T PRRT3 Silent p.P944P 0.30 TCGA-DK-A3WW-01 4 10027568 10027568 C T SLC2A9 5'Flank 0.08 TCGA-DK-A3WW-01 4 100434320 100434320 C G C4orf17 Missense_Mutation p.L28V 0.18 deleterious(0.01) possibly_damaging(0.557) TCGA-DK-A3WW-01 4 10079487 10079487 C T WDR1 Missense_Mutation p.E487K 0.20 tolerated(0.13) benign(0.004) TCGA-DK-A3WW-01 4 10446884 10446884 G A ZNF518B Nonsense_Mutation p.Q357* 0.25 TCGA-DK-A3WW-01 4 108820810 108820810 C T SGMS2 Silent p.L179L 0.24 TCGA-DK-A3WW-01 4 110932606 110932606 C G EGF Missense_Mutation p.Q1207E 0.17 tolerated_low_confidence(0.11) benign(0.002) TCGA-DK-A3WW-01 4 110972518 110972518 C T ELOVL6 Missense_Mutation p.M258I 0.20 tolerated(0.18) benign(0.001) TCGA-DK-A3WW-01 4 113507724 113507724 C T C4orf21 Missense_Mutation p.E1265K 0.14 deleterious(0) probably_damaging(0.956) TCGA-DK-A3WW-01 4 122853555 122853555 C T TRPC3 Silent p.S286S 0.18 TCGA-DK-A3WW-01 4 123237989 123237989 G A KIAA1109 Missense_Mutation p.E3548K 0.19 probably_damaging(0.993) TCGA-DK-A3WW-01 4 126238455 126238455 C G FAT4 Missense_Mutation p.Q297E 0.19 benign(0.02) TCGA-DK-A3WW-01 4 126370600 126370600 C G FAT4 Missense_Mutation p.S2810C 0.21 probably_damaging(0.967) TCGA-DK-A3WW-01 4 1305911 1305911 G T MAEA Missense_Mutation p.D72Y 0.16 deleterious(0.04) possibly_damaging(0.894) TCGA-DK-A3WW-01 4 140297588 140297588 G A NAA15 Missense_Mutation p.E673K 0.29 deleterious(0.03) benign(0.314) TCGA-DK-A3WW-01 4 140375281 140375281 G C RAB33B 5'UTR 0.41 TCGA-DK-A3WW-01 4 140811578 140811578 C G MAML3 Missense_Mutation p.E338Q 0.22 possibly_damaging(0.791) TCGA-DK-A3WW-01 4 141545369 141545369 C G TBC1D9 Missense_Mutation p.K993N 0.31 deleterious(0.04) benign(0.316) TCGA-DK-A3WW-01 4 146077090 146077090 C T OTUD4 Missense_Mutation p.E165K 0.17 tolerated(1) benign(0.007) TCGA-DK-A3WW-01 4 152096430 152096430 G C SH3D19 Nonsense_Mutation p.S29* 0.23 TCGA-DK-A3WW-01 4 153897464 153897464 C T FHDC1 Silent p.S1007S 0.20 TCGA-DK-A3WW-01 4 154514972 154514972 G C KIAA0922 Missense_Mutation p.M648I 0.18 tolerated(0.16) benign(0.06) TCGA-DK-A3WW-01 4 154625437 154625437 G C TLR2 Missense_Mutation p.E460Q 0.31 tolerated(0.07) benign(0.11) TCGA-DK-A3WW-01 4 154702903 154702903 C T SFRP2 Silent p.L196L 0.24 TCGA-DK-A3WW-01 4 155180751 155180751 G A DCHS2 Silent p.S1790S 0.07 TCGA-DK-A3WW-01 4 15602891 15602891 C G CC2D2A Missense_Mutation p.S1569C 0.33 deleterious(0) possibly_damaging(0.583) TCGA-DK-A3WW-01 4 157892073 157892073 G A PDGFC 5'UTR 0.19 TCGA-DK-A3WW-01 4 175898316 175898316 C T ADAM29 Missense_Mutation p.S547L 0.23 tolerated(0.15) benign(0.081) TCGA-DK-A3WW-01 4 2172900 2172900 G C POLN Silent p.L461L 0.17 TCGA-DK-A3WW-01 4 25005550 25005550 G A LGI2 Silent p.L387L 0.25 TCGA-DK-A3WW-01 4 25419344 25419344 C T ANAPC4 Nonsense_Mutation p.R728* 0.26 TCGA-DK-A3WW-01 4 26322518 26322518 G A RBPJ Intron 0.25 TCGA-DK-A3WW-01 4 26483793 26483793 C T CCKAR Splice_Site p.X252_splice 0.21 TCGA-DK-A3WW-01 4 3176447 3176447 G A HTT Splice_Site p.X1389_splice 0.30 TCGA-DK-A3WW-01 4 3213724 3213724 G A HTT Silent p.K2161K 0.20 TCGA-DK-A3WW-01 4 3494825 3494825 C T DOK7 Missense_Mutation p.S371L 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A3WW-01 4 38830852 38830852 C G TLR6 Missense_Mutation p.L81F 0.21 deleterious(0.01) probably_damaging(0.944) TCGA-DK-A3WW-01 4 39318616 39318616 C G RFC1 Missense_Mutation p.K374N 0.32 deleterious(0) benign(0.403) TCGA-DK-A3WW-01 4 39456162 39456162 C T RPL9 3'UTR 0.27 TCGA-DK-A3WW-01 4 4276349 4276349 C T LYAR Missense_Mutation p.E193K 0.22 tolerated(0.18) benign(0.342) TCGA-DK-A3WW-01 4 46979555 46979555 C T GABRA4 Missense_Mutation p.M122I 0.25 tolerated(0.11) benign(0.062) TCGA-DK-A3WW-01 4 47525165 47525165 G A ATP10D Missense_Mutation p.E208K 0.19 deleterious(0) probably_damaging(0.992) TCGA-DK-A3WW-01 4 48140806 48140806 C G TEC Missense_Mutation p.R563T 0.20 deleterious(0.03) benign(0.16) TCGA-DK-A3WW-01 4 54294335 54294335 C G FIP1L1 Missense_Mutation p.L387V 0.18 tolerated(0.14) possibly_damaging(0.472) TCGA-DK-A3WW-01 4 54424120 54424120 G A LNX1 Intron 0.22 TCGA-DK-A3WW-01 4 66218798 66218798 C G EPHA5 Missense_Mutation p.E754Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-DK-A3WW-01 4 66231707 66231707 C A EPHA5 Nonsense_Mutation p.E665* 0.24 TCGA-DK-A3WW-01 4 68619556 68619556 G T GNRHR Silent p.L166L 0.23 TCGA-DK-A3WW-01 4 70160649 70160649 C G UGT2B28 3'UTR 0.19 TCGA-DK-A3WW-01 4 72649680 72649680 C G GC Missense_Mutation p.R38T 0.28 deleterious(0.04) benign(0.023) TCGA-DK-A3WW-01 4 7776689 7776689 G A AFAP1 Intron 0.28 TCGA-DK-A3WW-01 4 78528941 78528941 G A CXCL13 Missense_Mutation p.R50Q 0.24 tolerated(0.17) possibly_damaging(0.476) TCGA-DK-A3WW-01 4 78695757 78695757 G A CNOT6L Silent p.L81L 0.18 TCGA-DK-A3WW-01 4 80328225 80328225 C G GK2 Missense_Mutation p.R377T 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A3WW-01 4 80828461 80828461 G A ANTXR2 3'UTR 0.38 TCGA-DK-A3WW-01 4 82056420 82056420 G C PRKG2 Missense_Mutation p.F555L 0.28 deleterious(0.02) benign(0.186) TCGA-DK-A3WW-01 4 8293139 8293139 C T HTRA3 Missense_Mutation p.R251W 0.18 deleterious(0.02) probably_damaging(1) TCGA-DK-A3WW-01 4 87023143 87023143 C T MAPK10 Silent p.V156V 0.19 TCGA-DK-A3WW-01 4 87622524 87622524 C G PTPN13 Missense_Mutation p.F255L 0.26 tolerated(0.53) benign(0.005) TCGA-DK-A3WW-01 4 95185963 95185963 G A SMARCAD1 Missense_Mutation p.E463K 0.24 deleterious(0.02) possibly_damaging(0.729) TCGA-DK-A3WW-01 5 112321592 112321592 G T DCP2 Missense_Mutation p.Q38H 0.26 deleterious(0.05) probably_damaging(0.984) TCGA-DK-A3WW-01 5 118500366 118500366 G C DMXL1 Missense_Mutation p.E1623Q 0.20 deleterious(0.03) probably_damaging(1) TCGA-DK-A3WW-01 5 123982976 123982976 G C ZNF608 Missense_Mutation p.S1034C 0.23 tolerated(0.06) benign(0) TCGA-DK-A3WW-01 5 130982830 130982830 C G FNIP1 Silent p.L1125L 0.22 TCGA-DK-A3WW-01 5 132652162 132652162 C G FSTL4 Missense_Mutation p.E198Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 5 134060783 134060783 G A SEC24A Silent p.%3D 0.25 TCGA-DK-A3WW-01 5 134346119 134346119 G C CATSPER3 Missense_Mutation p.L331F 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-DK-A3WW-01 5 134785491 134785491 G A TIFAB Nonsense_Mutation p.Q47* 0.25 TCGA-DK-A3WW-01 5 136403437 136403437 G A SPOCK1 Missense_Mutation p.P186S 0.27 tolerated(0.36) benign(0.052) TCGA-DK-A3WW-01 5 137781472 137781472 G A REEP2 3'UTR 0.31 TCGA-DK-A3WW-01 5 138643397 138643397 C T MATR3 Missense_Mutation p.S98F 0.24 deleterious(0.01) probably_damaging(0.974) TCGA-DK-A3WW-01 5 139865267 139865267 C T ANKHD1 Missense_Mutation p.P698S 0.29 unknown(0) TCGA-DK-A3WW-01 5 139907508 139907508 G A ANKHD1 Missense_Mutation p.R1713K 0.16 probably_damaging(0.991) TCGA-DK-A3WW-01 5 139907514 139907514 G T ANKHD1 Missense_Mutation p.G1715V 0.21 probably_damaging(1) TCGA-DK-A3WW-01 5 139928595 139928595 C G EIF4EBP3 Missense_Mutation p.P70A 0.19 deleterious(0.04) benign(0.085) TCGA-DK-A3WW-01 5 139930266 139930266 G A SRA1 3'UTR 0.24 TCGA-DK-A3WW-01 5 140166574 140166574 C T PCDHA1 Silent p.L233L 0.23 TCGA-DK-A3WW-01 5 140168060 140168060 G A PCDHA1 Missense_Mutation p.E729K 0.24 deleterious_low_confidence(0.03) benign(0.029) TCGA-DK-A3WW-01 5 140188377 140188377 G T PCDHA4 Silent p.V535V 0.30 TCGA-DK-A3WW-01 5 140220969 140220969 C G PCDHA8 Silent p.L21L 0.29 TCGA-DK-A3WW-01 5 140248873 140248873 G A PCDHA11 Missense_Mutation p.R62H 0.20 deleterious_low_confidence(0.02) probably_damaging(0.921) TCGA-DK-A3WW-01 5 140262519 140262519 G A PCDHA13 Silent p.L222L 0.20 TCGA-DK-A3WW-01 5 140559962 140559962 G C PCDHB8 Missense_Mutation p.E783Q 0.17 deleterious_low_confidence(0.04) benign(0.04) TCGA-DK-A3WW-01 5 140625700 140625700 G C PCDHB15 Missense_Mutation p.R185P 0.31 deleterious_low_confidence(0.02) benign(0.012) TCGA-DK-A3WW-01 5 140855658 140855658 G A PCDHGC3 5'UTR 0.22 TCGA-DK-A3WW-01 5 140855677 140855677 G C PCDHGC3 5'UTR 0.22 TCGA-DK-A3WW-01 5 140857358 140857358 G A PCDHGC3 Missense_Mutation p.D559N 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 5 145393552 145393552 C T SH3RF2 Silent p.I329I 0.25 TCGA-DK-A3WW-01 5 145969658 145969658 A C PPP2R2B Missense_Mutation p.V398G 0.21 tolerated(0.54) benign(0.001) TCGA-DK-A3WW-01 5 148206577 148206577 C T ADRB2 Silent p.F61F 0.23 TCGA-DK-A3WW-01 5 149264428 149264428 G C PDE6A Missense_Mutation p.S614C 0.22 deleterious(0) probably_damaging(0.997) TCGA-DK-A3WW-01 5 149576666 149576666 C A SLC6A7 Silent p.I137I 0.23 TCGA-DK-A3WW-01 5 149932879 149932879 C G NDST1 Silent p.L878L 0.15 TCGA-DK-A3WW-01 5 150512094 150512094 C T ANXA6 Missense_Mutation p.E227K 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 5 154181594 154181594 C G LARP1 Missense_Mutation p.L505V 0.19 tolerated(0.48) benign(0) TCGA-DK-A3WW-01 5 159830227 159830227 C T SLU7 3'UTR 0.19 TCGA-DK-A3WW-01 5 159992533 159992533 C G ATP10B Missense_Mutation p.R1438T 0.29 tolerated_low_confidence(0.57) benign(0) TCGA-DK-A3WW-01 5 168175380 168175380 C G SLIT3 Missense_Mutation p.E733Q 0.23 deleterious(0.02) benign(0.44) TCGA-DK-A3WW-01 5 17276082 17276082 C G BASP1 3'UTR 0.33 TCGA-DK-A3WW-01 5 175772332 175772332 G T SIMC1 Nonsense_Mutation p.E420* 0.29 TCGA-DK-A3WW-01 5 176047844 176047844 C T SNCB Missense_Mutation p.E125K 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A3WW-01 5 180219580 180219580 G A MGAT1 Missense_Mutation p.S131L 0.22 possibly_damaging(0.806) TCGA-DK-A3WW-01 5 1879900 1879900 C T IRX4 Missense_Mutation p.E152K 0.32 deleterious(0) probably_damaging(0.997) TCGA-DK-A3WW-01 5 31316392 31316392 G A CDH6 Missense_Mutation p.E490K 0.18 tolerated(1) benign(0.01) TCGA-DK-A3WW-01 5 32093126 32093126 C G PDZD2 Nonsense_Mutation p.S2614* 0.18 TCGA-DK-A3WW-01 5 33937997 33937997 C A RXFP3 Silent p.L384L 0.25 TCGA-DK-A3WW-01 5 36953855 36953855 C T NIPBL Silent p.L19L 0.24 TCGA-DK-A3WW-01 5 38258799 38258799 G C EGFLAM 5'UTR 0.40 TCGA-DK-A3WW-01 5 38496481 38496481 C T LIFR Intron 0.22 TCGA-DK-A3WW-01 5 38966820 38966820 G C RICTOR Missense_Mutation p.L408V 0.30 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 5 39202544 39202544 C G FYB Missense_Mutation p.L183F 0.21 deleterious(0.04) possibly_damaging(0.58) TCGA-DK-A3WW-01 5 44388630 44388630 G C FGF10 Missense_Mutation p.S52C 0.35 deleterious(0.03) benign(0.184) TCGA-DK-A3WW-01 5 44811174 44811174 G A MRPS30 Missense_Mutation p.R222Q 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3WW-01 5 55206499 55206499 C T IL31RA Silent p.F547F 0.23 TCGA-DK-A3WW-01 5 55238517 55238517 G A IL6ST Missense_Mutation p.S667L 0.22 deleterious(0.04) possibly_damaging(0.908) TCGA-DK-A3WW-01 5 60188377 60188377 C G ERCC8 Intron 0.21 TCGA-DK-A3WW-01 5 64863366 64863366 G C PPWD1 Missense_Mutation p.D75H 0.22 deleterious(0.03) benign(0.012) TCGA-DK-A3WW-01 5 68548244 68548244 G C CDK7 Splice_Site p.X43_splice 0.23 TCGA-DK-A3WW-01 5 74892360 74892360 G A POLK Silent p.E614E 0.15 TCGA-DK-A3WW-01 5 7773074 7773074 G A ADCY2 Silent p.L748L 0.25 TCGA-DK-A3WW-01 5 78322343 78322343 G A DMGDH Silent p.I698I 0.23 TCGA-DK-A3WW-01 5 79970869 79970869 C T MSH3 Silent p.T365T 0.26 TCGA-DK-A3WW-01 5 80553673 80553673 G C CKMT2 Missense_Mutation p.E293Q 0.19 tolerated(0.7) benign(0.014) TCGA-DK-A3WW-01 5 80742738 80742738 G A SSBP2 Missense_Mutation p.P243S 0.30 tolerated(0.15) probably_damaging(0.943) TCGA-DK-A3WW-01 5 89923556 89923556 G C GPR98 Missense_Mutation p.E401Q 0.15 possibly_damaging(0.727) TCGA-DK-A3WW-01 5 9136626 9136626 G C SEMA5A Missense_Mutation p.S530C 0.21 deleterious(0.04) possibly_damaging(0.619) TCGA-DK-A3WW-01 5 94278072 94278072 C G MCTP1 Silent p.L347L 0.27 TCGA-DK-A3WW-01 5 94936565 94936565 C T ARSK Missense_Mutation p.P371S 0.23 tolerated(0.15) benign(0.032) TCGA-DK-A3WW-01 5 96237258 96237258 T G ERAP2 Missense_Mutation p.W541G 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 6 105800901 105800901 G A PREP Missense_Mutation p.P257S 0.21 deleterious(0.04) benign(0.249) TCGA-DK-A3WW-01 6 10874680 10874680 G A GCM2 Missense_Mutation p.R357C 0.53 tolerated(0.29) benign(0) TCGA-DK-A3WW-01 6 109771587 109771587 C G MICAL1 Missense_Mutation p.M369I 0.26 deleterious(0) benign(0.338) TCGA-DK-A3WW-01 6 110531931 110531931 G A CDC40 Missense_Mutation p.E218K 0.41 deleterious(0.04) possibly_damaging(0.721) TCGA-DK-A3WW-01 6 111136325 111136325 G A CDK19 Silent p.F5F 0.28 TCGA-DK-A3WW-01 6 111632423 111632423 C G REV3L Missense_Mutation p.D2882H 0.25 deleterious(0) probably_damaging(0.991) TCGA-DK-A3WW-01 6 112671523 112671523 C G RFPL4B Missense_Mutation p.R205G 0.29 tolerated(0.58) benign(0.003) TCGA-DK-A3WW-01 6 114379227 114379227 C G HS3ST5 Missense_Mutation p.E79Q 0.16 tolerated(0.26) benign(0.177) TCGA-DK-A3WW-01 6 119669725 119669725 C G MAN1A1 Missense_Mutation p.R169T 0.22 tolerated(0.52) benign(0.017) TCGA-DK-A3WW-01 6 12124515 12124515 C G HIVEP1 Nonsense_Mutation p.S1496* 0.22 TCGA-DK-A3WW-01 6 127775168 127775168 C T SOGA3 3'UTR 0.15 TCGA-DK-A3WW-01 6 127796494 127796494 C G SOGA3 Missense_Mutation p.E893Q 0.22 deleterious(0) probably_damaging(0.968) TCGA-DK-A3WW-01 6 129636636 129636636 G A LAMA2 Missense_Mutation p.E1191K 0.24 tolerated(0.08) benign(0.016) TCGA-DK-A3WW-01 6 130535486 130535486 G C SAMD3 Missense_Mutation p.R89G 0.23 tolerated_low_confidence(0.46) benign(0) TCGA-DK-A3WW-01 6 134350213 134350213 G C SLC2A12 Silent p.L250L 0.21 TCGA-DK-A3WW-01 6 136683622 136683622 C G MAP7 Missense_Mutation p.E520Q 0.23 deleterious(0) unknown(0) TCGA-DK-A3WW-01 6 139487792 139487792 C T HECA Missense_Mutation p.P215S 0.21 tolerated(1) benign(0.002) TCGA-DK-A3WW-01 6 146275900 146275900 C G SHPRH Missense_Mutation p.E187Q 0.18 tolerated_low_confidence(0.13) benign(0.035) TCGA-DK-A3WW-01 6 150387253 150387253 C T ULBP3 Missense_Mutation p.R45K 0.16 deleterious(0.02) probably_damaging(0.91) TCGA-DK-A3WW-01 6 152443411 152443411 C G SYNE1 3'UTR 0.33 TCGA-DK-A3WW-01 6 159262970 159262970 C G OSTCP1 RNA 0.21 TCGA-DK-A3WW-01 6 160769463 160769463 C G SLC22A3 Missense_Mutation p.F4L 0.25 tolerated(0.51) probably_damaging(0.97) TCGA-DK-A3WW-01 6 161015047 161015047 G A LPA Missense_Mutation p.S1191F 0.27 deleterious(0.04) probably_damaging(0.922) TCGA-DK-A3WW-01 6 167754887 167754887 C G TTLL2 Nonsense_Mutation p.S500* 0.15 TCGA-DK-A3WW-01 6 17781078 17781078 G A KIF13A Silent p.V1243V 0.25 TCGA-DK-A3WW-01 6 18249902 18249902 C G DEK Missense_Mutation p.D248H 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A3WW-01 6 21201376 21201376 G C CDKAL1 Missense_Mutation p.K473N 0.22 deleterious(0.02) probably_damaging(0.969) TCGA-DK-A3WW-01 6 24175047 24175047 G A DCDC2 Nonsense_Mutation p.Q448* 0.13 TCGA-DK-A3WW-01 6 26031895 26031895 G C HIST1H3B Missense_Mutation p.R132G 0.35 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DK-A3WW-01 6 26045914 26045914 G A HIST1H3C Silent p.A92A 0.20 TCGA-DK-A3WW-01 6 26217568 26217568 G C HIST1H2AE Missense_Mutation p.E122D 0.24 tolerated_low_confidence(0.15) benign(0) TCGA-DK-A3WW-01 6 26285723 26285723 G C HIST1H4H Missense_Mutation p.S2C 0.21 deleterious_low_confidence(0.03) benign(0.184) TCGA-DK-A3WW-01 6 26465586 26465586 G A BTN2A1 Missense_Mutation p.E296K 0.45 tolerated(0.23) benign(0.004) TCGA-DK-A3WW-01 6 26468795 26468795 C T BTN2A1 3'UTR 0.21 TCGA-DK-A3WW-01 6 26597198 26597198 C G ABT1 5'UTR 0.43 TCGA-DK-A3WW-01 6 27420524 27420524 G C ZNF184 Missense_Mutation p.H272D 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 6 27840978 27840978 C A HIST1H4L Nonstop_Mutation p.*104Lext*? 0.13 TCGA-DK-A3WW-01 6 30619214 30619214 C T C6orf136 Silent p.F426F 0.22 TCGA-DK-A3WW-01 6 31124900 31124900 C T CCHCR1 Intron 0.35 TCGA-DK-A3WW-01 6 31544355 31544355 C T TNF Silent p.V77V 0.25 TCGA-DK-A3WW-01 6 32010104 32010104 G A TNXB Silent p.F511F 0.15 TCGA-DK-A3WW-01 6 32021477 32021477 C T TNXB Missense_Mutation p.E2825K 0.21 possibly_damaging(0.486) TCGA-DK-A3WW-01 6 32170230 32170230 C T NOTCH4 Silent p.L1126L 0.11 TCGA-DK-A3WW-01 6 32713004 32713004 G A HLA-DQA2 Missense_Mutation p.E51K 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 6 33135226 33135226 G A COL11A2 Silent p.L1281L 0.28 TCGA-DK-A3WW-01 6 33154506 33154506 C T COL11A2 Silent p.Q232Q 0.22 TCGA-DK-A3WW-01 6 33165597 33165597 C T RXRB Silent p.R254R 0.14 TCGA-DK-A3WW-01 6 33173242 33173242 C G HSD17B8 Missense_Mutation p.Q136E 0.21 deleterious(0) probably_damaging(0.988) TCGA-DK-A3WW-01 6 33561114 33561114 C G GGNBP1 3'Flank 0.16 TCGA-DK-A3WW-01 6 39513460 39513460 C G KIF6 Missense_Mutation p.E396Q 0.24 tolerated(0.23) benign(0.218) TCGA-DK-A3WW-01 6 397158 397158 C T IRF4 Silent p.Y181Y 0.19 TCGA-DK-A3WW-01 6 41707611 41707611 G C PGC Missense_Mutation p.L281V 0.30 deleterious(0.03) benign(0.265) TCGA-DK-A3WW-01 6 42936706 42936706 C T PEX6 Missense_Mutation p.G462E 0.23 tolerated(0.27) benign(0.062) TCGA-DK-A3WW-01 6 42978399 42978399 C T PPP2R5D Intron 0.27 TCGA-DK-A3WW-01 6 42995194 42995194 C T RRP36 Missense_Mutation p.R208W 0.27 deleterious(0) probably_damaging(0.91) TCGA-DK-A3WW-01 6 43415550 43415550 C T ABCC10 Silent p.I1278I 0.25 TCGA-DK-A3WW-01 6 43495465 43495465 C T XPO5 Missense_Mutation p.E943K 0.26 tolerated(0.14) benign(0.111) TCGA-DK-A3WW-01 6 43578408 43578408 G T POLH Missense_Mutation p.D398Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 6 43591732 43591732 G T GTPBP2 Missense_Mutation p.L392M 0.28 deleterious(0) probably_damaging(0.969) TCGA-DK-A3WW-01 6 44104156 44104156 G C TMEM63B Missense_Mutation p.D117H 0.24 tolerated(0.08) probably_damaging(0.984) TCGA-DK-A3WW-01 6 44107235 44107235 G A TMEM63B Missense_Mutation p.D147N 0.23 deleterious(0) possibly_damaging(0.65) TCGA-DK-A3WW-01 6 47254118 47254118 C G TNFRSF21 Missense_Mutation p.E104Q 0.27 tolerated(0.32) benign(0.01) TCGA-DK-A3WW-01 6 5002362 5002362 C T RPP40 Missense_Mutation p.E81K 0.16 tolerated(0.17) benign(0.328) TCGA-DK-A3WW-01 6 55406893 55406893 C G HMGCLL1 Missense_Mutation p.E82Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 6 56507261 56507261 C T DST Missense_Mutation p.D70N 0.16 possibly_damaging(0.533) TCGA-DK-A3WW-01 6 6152170 6152170 G A F13A1 Nonsense_Mutation p.Q641* 0.48 TCGA-DK-A3WW-01 6 64389966 64389966 G A PHF3 Missense_Mutation p.E104K 0.15 deleterious(0) possibly_damaging(0.728) TCGA-DK-A3WW-01 6 64389977 64389977 G C PHF3 Silent p.L107L 0.16 TCGA-DK-A3WW-01 6 69653779 69653779 G C BAI3 Missense_Mutation p.R363P 0.23 deleterious(0) probably_damaging(0.984) TCGA-DK-A3WW-01 6 70411792 70411792 G A LMBRD1 Silent p.L323L 0.26 TCGA-DK-A3WW-01 6 70639408 70639408 G C COL19A1 Missense_Mutation p.R161P 0.24 tolerated(0.12) unknown(0) TCGA-DK-A3WW-01 6 72957812 72957812 C T RIMS1 Silent p.V741V 0.21 TCGA-DK-A3WW-01 6 7303849 7303849 C T SSR1 Missense_Mutation p.D72N 0.49 tolerated(0.1) probably_damaging(0.917) TCGA-DK-A3WW-01 6 74363522 74363522 C T SLC17A5 Missense_Mutation p.E30K 0.29 tolerated(0.5) benign(0.002) TCGA-DK-A3WW-01 6 76023801 76023801 C T FILIP1 Missense_Mutation p.E583K 0.31 deleterious(0.01) benign(0.298) TCGA-DK-A3WW-01 6 76063265 76063265 C G FILIP1 Missense_Mutation p.E207Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-DK-A3WW-01 6 76124427 76124427 C A FILIP1 Nonsense_Mutation p.E88* 0.24 TCGA-DK-A3WW-01 6 8041426 8041426 G A BLOC1S5 Missense_Mutation p.L91F 0.26 deleterious(0.01) probably_damaging(0.928) TCGA-DK-A3WW-01 6 82461733 82461733 G A FAM46A Silent p.F42F 0.38 TCGA-DK-A3WW-01 6 83075366 83075366 C G TPBG Missense_Mutation p.L230V 0.23 deleterious(0.02) benign(0.393) TCGA-DK-A3WW-01 7 100084635 100084635 C T NYAP1 Missense_Mutation p.S87L 0.15 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 7 100086600 100086600 G A NYAP1 Missense_Mutation p.R419Q 0.15 tolerated(0.05) possibly_damaging(0.806) TCGA-DK-A3WW-01 7 100245112 100245112 C T ACTL6B Silent p.E238E 0.21 TCGA-DK-A3WW-01 7 100320678 100320678 C G EPO Silent p.L168L 0.25 TCGA-DK-A3WW-01 7 100549608 100549608 C G MUC3A Silent p.L63L 0.14 TCGA-DK-A3WW-01 7 100856159 100856159 G A PLOD3 Silent p.F281F 0.31 TCGA-DK-A3WW-01 7 100861459 100861459 G A ZNHIT1 5'UTR 0.28 TCGA-DK-A3WW-01 7 101926422 101926422 C A SH2B2 5'Flank 0.18 TCGA-DK-A3WW-01 7 102462632 102462632 C G FBXL13 Missense_Mutation p.E625Q 0.24 tolerated(0.88) benign(0.013) TCGA-DK-A3WW-01 7 103017300 103017300 C G SLC26A5 Missense_Mutation p.E666Q 0.12 deleterious(0) possibly_damaging(0.886) TCGA-DK-A3WW-01 7 111541796 111541796 C T DOCK4 Silent p.K418K 0.21 TCGA-DK-A3WW-01 7 112579836 112579836 C G C7orf60 5'UTR 0.24 TCGA-DK-A3WW-01 7 114655760 114655760 T C MDFIC Missense_Mutation p.I280T 0.23 deleterious(0.01) probably_damaging(0.956) TCGA-DK-A3WW-01 7 115581054 115581054 G A TFEC Intron 0.34 TCGA-DK-A3WW-01 7 117431347 117431347 G A CTTNBP2 Nonsense_Mutation p.Q635* 0.19 TCGA-DK-A3WW-01 7 120764493 120764493 G A CPED1 Missense_Mutation p.E343K 0.16 tolerated(0.16) benign(0.009) TCGA-DK-A3WW-01 7 121738811 121738811 C G AASS Missense_Mutation p.E506Q 0.29 tolerated(0.55) benign(0.013) TCGA-DK-A3WW-01 7 129916530 129916530 C T CPA2 Silent p.F216F 0.21 TCGA-DK-A3WW-01 7 130020292 130020292 C T CPA1 5'UTR 0.30 TCGA-DK-A3WW-01 7 130027841 130027841 C T CPA1 Missense_Mutation p.H417Y 0.21 deleterious(0) benign(0.428) TCGA-DK-A3WW-01 7 134849404 134849404 G A TMEM140 Missense_Mutation p.E71K 0.30 tolerated(0.11) possibly_damaging(0.828) TCGA-DK-A3WW-01 7 141721466 141721466 G C MGAM Missense_Mutation p.L213F 0.19 tolerated(0.54) benign(0.251) TCGA-DK-A3WW-01 7 142149206 142149206 C G TRBV5-5 Missense_Mutation p.G22A 0.20 deleterious(0.01) possibly_damaging(0.596) TCGA-DK-A3WW-01 7 142566063 142566063 T C EPHB6 Silent p.L661L 0.19 TCGA-DK-A3WW-01 7 142612712 142612712 G A TRPV5 Silent p.I383I 0.22 TCGA-DK-A3WW-01 7 148457547 148457547 G T CUL1 Nonsense_Mutation p.E250* 0.30 TCGA-DK-A3WW-01 7 148512132 148512132 C G EZH2 Splice_Site p.X516_splice 0.23 TCGA-DK-A3WW-01 7 148514356 148514356 G A EZH2 Silent p.F456F 0.23 TCGA-DK-A3WW-01 7 149318530 149318530 A C ZNF767 RNA 0.27 TCGA-DK-A3WW-01 7 149503891 149503891 C G SSPO RNA 0.25 TCGA-DK-A3WW-01 7 150390460 150390460 G T GIMAP2 3'UTR 0.30 TCGA-DK-A3WW-01 7 150738289 150738289 C A ABCB8 Silent p.L529L 0.15 TCGA-DK-A3WW-01 7 150835257 150835257 C T AGAP3 Missense_Mutation p.S508F 0.21 deleterious(0.05) possibly_damaging(0.448) TCGA-DK-A3WW-01 7 151802337 151802337 G A GALNT11 Silent p.L198L 0.18 TCGA-DK-A3WW-01 7 151859702 151859702 G A KMT2C Nonsense_Mutation p.Q3654* 0.26 TCGA-DK-A3WW-01 7 151904469 151904469 C A KMT2C Nonsense_Mutation p.E1253* 0.17 TCGA-DK-A3WW-01 7 158456891 158456891 C T NCAPG2 Silent p.E600E 0.11 TCGA-DK-A3WW-01 7 158723187 158723187 C T WDR60 Silent p.L843L 0.15 TCGA-DK-A3WW-01 7 1785913 1785913 G A ELFN1 Missense_Mutation p.E561K 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 7 17931249 17931249 C T SNX13 Missense_Mutation p.E80K 0.19 tolerated(0.44) benign(0.025) TCGA-DK-A3WW-01 7 21640356 21640356 G A DNAH11 Silent p.V1021V 0.24 TCGA-DK-A3WW-01 7 21856220 21856220 G A DNAH11 Missense_Mutation p.E3497K 0.22 benign(0.046) TCGA-DK-A3WW-01 7 26236541 26236541 C G HNRNPA2B1 Missense_Mutation p.E133Q 0.31 deleterious(0.05) unknown(0) TCGA-DK-A3WW-01 7 26240221 26240221 G C HNRNPA2B1 5'UTR 0.22 TCGA-DK-A3WW-01 7 29440222 29440222 G C CHN2 Missense_Mutation p.K118N 0.26 deleterious(0) probably_damaging(0.998) TCGA-DK-A3WW-01 7 30066175 30066175 G C FKBP14 5'UTR 0.48 TCGA-DK-A3WW-01 7 30544338 30544338 C T GGCT 5'UTR 0.20 TCGA-DK-A3WW-01 7 31013635 31013635 C T GHRHR Silent p.F211F 0.31 TCGA-DK-A3WW-01 7 31126105 31126105 C T ADCYAP1R1 Silent p.F259F 0.16 TCGA-DK-A3WW-01 7 32914744 32914744 C T KBTBD2 Missense_Mutation p.E66K 0.19 deleterious(0.01) benign(0.39) TCGA-DK-A3WW-01 7 37298857 37298857 G A ELMO1 Silent p.V114V 0.19 TCGA-DK-A3WW-01 7 38289057 38289057 C A TRGC2 Missense_Mutation p.D40Y 0.22 deleterious(0) probably_damaging(0.984) TCGA-DK-A3WW-01 7 44047192 44047192 G A SPDYE1 Intron 0.25 TCGA-DK-A3WW-01 7 44364973 44364973 G C CAMK2B Silent p.L16L 0.35 TCGA-DK-A3WW-01 7 44576463 44576463 G T NPC1L1 Missense_Mutation p.F553L 0.25 deleterious(0.01) benign(0.206) TCGA-DK-A3WW-01 7 48273724 48273724 G A ABCA13 Silent p.L291L 0.25 TCGA-DK-A3WW-01 7 4899454 4899454 G C PAPOLB 3'UTR 0.33 TCGA-DK-A3WW-01 7 5104113 5104113 G C RBAK Missense_Mutation p.E342D 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-DK-A3WW-01 7 5104735 5104735 G C RBAK Missense_Mutation p.E550Q 0.25 tolerated(1) benign(0.401) TCGA-DK-A3WW-01 7 55248978 55248978 C A EGFR Intron 0.21 TCGA-DK-A3WW-01 7 55270282 55270282 G A EGFR Missense_Mutation p.E1079K 0.30 tolerated(0.22) benign(0.08) TCGA-DK-A3WW-01 7 5567464 5567464 G C ACTB Missense_Mutation p.S348W 0.20 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DK-A3WW-01 7 6193699 6193699 G A USP42 Missense_Mutation p.M838I 0.26 tolerated(0.45) benign(0) TCGA-DK-A3WW-01 7 64168318 64168318 C T ZNF107 Missense_Mutation p.H546Y 0.23 deleterious(0.01) benign(0.006) TCGA-DK-A3WW-01 7 66453431 66453431 T C SBDS Missense_Mutation p.E227G 0.25 deleterious(0.01) possibly_damaging(0.88) TCGA-DK-A3WW-01 7 6731839 6731839 C G ZNF12 Missense_Mutation p.G245A 0.24 tolerated(0.11) benign(0.001) TCGA-DK-A3WW-01 7 6731904 6731904 C G ZNF12 Missense_Mutation p.Q223H 0.10 tolerated(0.21) benign(0.429) TCGA-DK-A3WW-01 7 75156971 75156971 C T PMS2P3 RNA 0.26 TCGA-DK-A3WW-01 7 81600022 81600022 C G CACNA2D1 Missense_Mutation p.D725H 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-DK-A3WW-01 7 89790200 89790200 G C STEAP1 Missense_Mutation p.D56H 0.20 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DK-A3WW-01 7 926275 926275 G A GET4 Missense_Mutation p.D102N 0.26 tolerated(0.17) benign(0.005) TCGA-DK-A3WW-01 7 92732279 92732279 T A SAMD9 Missense_Mutation p.E1044D 0.35 tolerated(0.08) benign(0.3) TCGA-DK-A3WW-01 7 93516176 93516176 G A TFPI2 Missense_Mutation p.R222C 0.19 tolerated(0.14) benign(0.066) TCGA-DK-A3WW-01 7 94293511 94293511 C T PEG10 Nonsense_Mutation p.Q215* 0.22 TCGA-DK-A3WW-01 7 94935662 94935662 C G PON1 Missense_Mutation p.E239Q 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 7 98533223 98533223 G A TRRAP Missense_Mutation p.E1346K 0.17 possibly_damaging(0.824) TCGA-DK-A3WW-01 7 99002548 99002548 C T PDAP1 Silent p.A14A 0.20 TCGA-DK-A3WW-01 7 99013816 99013816 C G BUD31 Missense_Mutation p.F50L 0.28 tolerated(0.05) benign(0.097) TCGA-DK-A3WW-01 7 99050001 99050001 G C CPSF4 Missense_Mutation p.E170Q 0.23 tolerated(0.15) benign(0.387) TCGA-DK-A3WW-01 7 99453289 99453289 T A CYP3A43 Nonsense_Mutation p.L249* 0.29 TCGA-DK-A3WW-01 7 99957061 99957061 C T PILRB Silent p.L186L 0.21 TCGA-DK-A3WW-01 8 103266703 103266703 C T UBR5 Missense_Mutation p.E2743K 0.24 deleterious(0) probably_damaging(0.949) TCGA-DK-A3WW-01 8 113504854 113504855 TC G CSMD3 Frame_Shift_Del p.G1714Afs*6 0.15 TCGA-DK-A3WW-01 8 118847773 118847773 C T EXT1 Silent p.V358V 0.27 TCGA-DK-A3WW-01 8 121282363 121282363 C A COL14A1 Missense_Mutation p.L1055I 0.14 tolerated(0.24) probably_damaging(0.998) TCGA-DK-A3WW-01 8 124146406 124146406 G C TBC1D31 Missense_Mutation p.R820T 0.26 deleterious(0) benign(0.258) TCGA-DK-A3WW-01 8 124968267 124968267 G C FER1L6 Missense_Mutation p.R10T 0.25 deleterious_low_confidence(0.02) benign(0.008) TCGA-DK-A3WW-01 8 125555327 125555327 G C NDUFB9 Splice_Site p.X34_splice 0.19 TCGA-DK-A3WW-01 8 125555347 125555347 G C NDUFB9 Missense_Mutation p.A41P 0.20 deleterious(0) probably_damaging(0.997) TCGA-DK-A3WW-01 8 126036882 126036882 C T KIAA0196 Missense_Mutation p.D1153N 0.21 tolerated(0.22) benign(0.118) TCGA-DK-A3WW-01 8 131073251 131073251 C T ASAP1 Silent p.Q922Q 0.23 TCGA-DK-A3WW-01 8 132052131 132052131 C T ADCY8 Missense_Mutation p.R150Q 0.37 deleterious(0.02) probably_damaging(0.953) TCGA-DK-A3WW-01 8 133740098 133740098 G A TMEM71 Nonsense_Mutation p.Q189* 0.24 TCGA-DK-A3WW-01 8 141568637 141568637 C T AGO2 Missense_Mutation p.M275I 0.21 tolerated(0.19) benign(0.016) TCGA-DK-A3WW-01 8 143396400 143396400 G C TSNARE1 Silent p.L346L 0.18 TCGA-DK-A3WW-01 8 144681737 144681737 C T TIGD5 Missense_Mutation p.P555L 0.21 tolerated(0.1) benign(0.302) TCGA-DK-A3WW-01 8 145003979 145003979 C G PLEC Missense_Mutation p.E1057Q 0.24 unknown(0) TCGA-DK-A3WW-01 8 145004382 145004382 C A PLEC Nonsense_Mutation p.E985* 0.22 TCGA-DK-A3WW-01 8 145066917 145066917 G A GRINA Missense_Mutation p.E342K 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 8 145736434 145736434 C T MFSD3 Silent p.L376L 0.23 TCGA-DK-A3WW-01 8 145748883 145748883 C G LRRC14 3'UTR 0.36 TCGA-DK-A3WW-01 8 23049204 23049204 C T TNFRSF10A 3'UTR 0.21 TCGA-DK-A3WW-01 8 23049437 23049437 C T TNFRSF10A Missense_Mutation p.E393K 0.47 deleterious(0) probably_damaging(0.989) TCGA-DK-A3WW-01 8 23049482 23049482 C T TNFRSF10A Missense_Mutation p.D378N 0.22 tolerated(1) benign(0.029) TCGA-DK-A3WW-01 8 24775109 24775109 G A NEFM Missense_Mutation p.E581K 0.15 tolerated(0.52) unknown(0) TCGA-DK-A3WW-01 8 24811727 24811727 C G CTD-2168K21.2 5'Flank 0.20 TCGA-DK-A3WW-01 8 27729502 27729502 C T SCARA5 Silent p.V479V 0.23 TCGA-DK-A3WW-01 8 28671062 28671062 C G INTS9 Missense_Mutation p.E186Q 0.24 tolerated(0.19) possibly_damaging(0.731) TCGA-DK-A3WW-01 8 30560623 30560623 C T GSR Silent p.E209E 0.25 TCGA-DK-A3WW-01 8 30969307 30969307 C G WRN Silent p.V755V 0.28 TCGA-DK-A3WW-01 8 31024573 31024573 C T WRN Missense_Mutation p.P1340S 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 8 33310999 33310999 C T FUT10 Silent p.R37R 0.22 TCGA-DK-A3WW-01 8 36698504 36698504 C G KCNU1 Silent p.L562L 0.25 TCGA-DK-A3WW-01 8 38282030 38282030 C G FGFR1 Missense_Mutation p.L342F 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-DK-A3WW-01 8 39495221 39495221 G C ADAM18 Missense_Mutation p.V276L 0.32 tolerated(0.19) benign(0.022) TCGA-DK-A3WW-01 8 43147757 43147757 G A POTEA RNA 0.25 TCGA-DK-A3WW-01 8 48309060 48309060 G C SPIDR Missense_Mutation p.R217T 0.27 tolerated(0.29) benign(0.039) TCGA-DK-A3WW-01 8 4851876 4851876 C T CSMD1 Silent p.A21A 0.13 TCGA-DK-A3WW-01 8 48641546 48641546 C G SPIDR Silent p.L829L 0.15 TCGA-DK-A3WW-01 8 52733177 52733177 G A PCMTD1 Nonsense_Mutation p.Q270* 0.05 TCGA-DK-A3WW-01 8 53558413 53558413 G A RB1CC1 Missense_Mutation p.S1279F 0.30 deleterious_low_confidence(0.01) benign(0.063) TCGA-DK-A3WW-01 8 55537354 55537354 G C RP1 Missense_Mutation p.K304N 0.10 tolerated(0.06) possibly_damaging(0.764) TCGA-DK-A3WW-01 8 55538471 55538471 C T RP1 Nonsense_Mutation p.R677* 0.27 TCGA-DK-A3WW-01 8 61693580 61693580 C T CHD7 Silent p.L563L 0.26 TCGA-DK-A3WW-01 8 61773577 61773577 G C CHD7 Missense_Mutation p.E2575Q 0.25 possibly_damaging(0.453) TCGA-DK-A3WW-01 8 67576660 67576660 C T VCPIP1 Missense_Mutation p.R845K 0.23 tolerated(0.34) benign(0.015) TCGA-DK-A3WW-01 8 68150658 68150658 G - ARFGEF1 Frame_Shift_Del p.S1070Lfs*25 0.22 TCGA-DK-A3WW-01 8 69039652 69039652 C T PREX2 Missense_Mutation p.S1255L 0.20 deleterious(0) benign(0.014) TCGA-DK-A3WW-01 8 70964189 70964189 G A PRDM14 3'UTR 0.14 TCGA-DK-A3WW-01 8 73848659 73848659 G A KCNB2 Missense_Mutation p.E357K 0.24 deleterious(0) probably_damaging(0.996) TCGA-DK-A3WW-01 8 77775830 77775830 G A ZFHX4 Missense_Mutation p.E3294K 0.26 probably_damaging(0.979) TCGA-DK-A3WW-01 8 8175697 8175697 C T SGK223 Silent p.L1396L 0.32 TCGA-DK-A3WW-01 8 8176545 8176545 C T SGK223 Missense_Mutation p.E1114K 0.27 probably_damaging(0.995) TCGA-DK-A3WW-01 8 82714735 82714735 C G SNX16 Splice_Site p.X273_splice 0.19 TCGA-DK-A3WW-01 8 8750290 8750290 G C MFHAS1 Silent p.V93V 0.26 TCGA-DK-A3WW-01 8 92972658 92972658 C G RUNX1T1 Missense_Mutation p.D554H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 8 94808168 94808168 C G TMEM67 Missense_Mutation p.Q605E 0.31 tolerated(0.19) benign(0.038) TCGA-DK-A3WW-01 8 95527162 95527162 C A KIAA1429 Nonsense_Mutation p.E896* 0.42 TCGA-DK-A3WW-01 9 100417166 100417166 C T NCBP1 Missense_Mutation p.A392V 0.21 deleterious(0) probably_damaging(0.997) TCGA-DK-A3WW-01 9 107571819 107571819 G A ABCA1 Missense_Mutation p.T1401I 0.21 tolerated(0.27) benign(0.008) TCGA-DK-A3WW-01 9 110086268 110086268 G C RAD23B Missense_Mutation p.Q305H 0.25 deleterious(0) probably_damaging(0.98) TCGA-DK-A3WW-01 9 112153421 112153421 C T PTPN3 Silent p.V701V 0.29 TCGA-DK-A3WW-01 9 115969571 115969571 G C FKBP15 Missense_Mutation p.Q59E 0.19 tolerated(0.18) benign(0.263) TCGA-DK-A3WW-01 9 117087340 117087340 G C ORM1 Missense_Mutation p.E150Q 0.22 tolerated(0.25) benign(0.112) TCGA-DK-A3WW-01 9 117838737 117838737 G A TNC Missense_Mutation p.S931F 0.27 deleterious(0) probably_damaging(0.962) TCGA-DK-A3WW-01 9 123476050 123476050 G C MEGF9 Missense_Mutation p.S196C 0.20 tolerated(0.06) benign(0.346) TCGA-DK-A3WW-01 9 124065295 124065295 C T GSN Silent p.F152F 0.19 TCGA-DK-A3WW-01 9 124522678 124522678 C G DAB2IP Missense_Mutation p.S349C 0.25 tolerated(1) benign(0.007) TCGA-DK-A3WW-01 9 130269061 130269061 G C FAM129B 3'UTR 0.23 TCGA-DK-A3WW-01 9 131030767 131030767 C T GOLGA2 Missense_Mutation p.D82N 0.26 tolerated(0.16) benign(0.017) TCGA-DK-A3WW-01 9 131258398 131258398 C G ODF2 Missense_Mutation p.L664V 0.22 tolerated(0.33) benign(0.026) TCGA-DK-A3WW-01 9 131454134 131454134 C T SET Intron 0.29 TCGA-DK-A3WW-01 9 131515056 131515056 G A ZER1 Silent p.L273L 0.16 TCGA-DK-A3WW-01 9 131768970 131768970 C T NUP188 3'UTR 0.26 TCGA-DK-A3WW-01 9 132375791 132375791 C G C9orf50 Missense_Mutation p.E322D 0.26 tolerated(0.3) possibly_damaging(0.533) TCGA-DK-A3WW-01 9 132584879 132584879 G C TOR1A Nonsense_Mutation p.S142* 0.16 TCGA-DK-A3WW-01 9 133948211 133948211 C T LAMC3 Missense_Mutation p.L1136F 0.22 deleterious(0.02) probably_damaging(0.962) TCGA-DK-A3WW-01 9 135553634 135553634 G C GTF3C4 Missense_Mutation p.E210Q 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-DK-A3WW-01 9 135778026 135778026 C T TSC1 Missense_Mutation p.R786Q 0.21 tolerated(0.17) benign(0.006) TCGA-DK-A3WW-01 9 136004577 136004577 G C RALGDS Silent p.L43L 0.17 TCGA-DK-A3WW-01 9 136213407 136213407 G C MED22 Missense_Mutation p.I37M 0.29 deleterious(0.02) possibly_damaging(0.888) TCGA-DK-A3WW-01 9 138516451 138516451 C T GLT6D1 Missense_Mutation p.R108Q 0.25 tolerated(0.06) benign(0.313) TCGA-DK-A3WW-01 9 139396271 139396271 G A NOTCH1 Missense_Mutation p.S1856F 0.24 deleterious(0) possibly_damaging(0.498) TCGA-DK-A3WW-01 9 139906347 139906347 G A ABCA2 Silent p.V1828V 0.24 TCGA-DK-A3WW-01 9 140051410 140051410 G C GRIN1 Missense_Mutation p.E318Q 0.32 tolerated(0.29) benign(0.101) TCGA-DK-A3WW-01 9 140075251 140075251 G A ANAPC2 Silent p.F533F 0.27 TCGA-DK-A3WW-01 9 140130619 140130619 C T SLC34A3 Silent p.V517V 0.17 TCGA-DK-A3WW-01 9 140437939 140437939 C G PNPLA7 Missense_Mutation p.D151H 0.27 deleterious(0) probably_damaging(0.985) TCGA-DK-A3WW-01 9 16436824 16436824 G C BNC2 Silent p.L456L 0.27 TCGA-DK-A3WW-01 9 17464510 17464510 G A CNTLN Silent p.E1140E 0.31 TCGA-DK-A3WW-01 9 19345995 19345995 G C DENND4C Missense_Mutation p.K1027N 0.23 deleterious(0.04) possibly_damaging(0.886) TCGA-DK-A3WW-01 9 19346457 19346457 G C DENND4C Missense_Mutation p.K1181N 0.14 deleterious(0.04) benign(0.262) TCGA-DK-A3WW-01 9 19376564 19376564 C G RPS6 Silent p.L194L 0.21 TCGA-DK-A3WW-01 9 19786586 19786586 C G SLC24A2 Missense_Mutation p.K93N 0.18 tolerated(0.37) benign(0.002) TCGA-DK-A3WW-01 9 2056767 2056767 G C SMARCA2 Silent p.L423L 0.33 TCGA-DK-A3WW-01 9 2837350 2837350 C T KIAA0020 Missense_Mutation p.G45E 0.18 tolerated(0.41) benign(0.002) TCGA-DK-A3WW-01 9 32784684 32784684 C T TMEM215 Missense_Mutation p.S168L 0.32 tolerated(0.15) probably_damaging(0.99) TCGA-DK-A3WW-01 9 34489432 34489432 G C DNAI1 Missense_Mutation p.D125H 0.18 tolerated(0.11) benign(0.001) TCGA-DK-A3WW-01 9 34661513 34661513 C T IL11RA 3'UTR 0.32 TCGA-DK-A3WW-01 9 37498107 37498107 G A POLR1E Missense_Mutation p.E258K 0.31 tolerated(0.25) benign(0.014) TCGA-DK-A3WW-01 9 5022040 5022040 C G JAK2 Missense_Mutation p.S18C 0.23 deleterious_low_confidence(0.02) benign(0.078) TCGA-DK-A3WW-01 9 71851902 71851902 G C TJP2 Missense_Mutation p.D708H 0.19 tolerated(0.07) possibly_damaging(0.885) TCGA-DK-A3WW-01 9 71851923 71851923 G A TJP2 Missense_Mutation p.D715N 0.18 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 9 71852031 71852031 G C TJP2 Missense_Mutation p.E751Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 9 74764516 74764516 G T GDA Missense_Mutation p.R14L 0.39 tolerated(0.22) benign(0.403) TCGA-DK-A3WW-01 9 77416817 77416817 G C TRPM6 Nonsense_Mutation p.S669* 0.20 TCGA-DK-A3WW-01 9 8484270 8484270 G A PTPRD Missense_Mutation p.R1088C 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A3WW-01 9 86474218 86474218 C G KIF27 Missense_Mutation p.K1001N 0.19 deleterious(0) probably_damaging(0.992) TCGA-DK-A3WW-01 9 88247959 88247959 G A AGTPBP1 Nonsense_Mutation p.Q505* 0.21 TCGA-DK-A3WW-01 9 90497818 90497818 C T SPATA31E1 Silent p.L4L 0.30 TCGA-DK-A3WW-01 9 94809914 94809914 G C SPTLC1 Missense_Mutation p.S322C 0.22 deleterious(0) probably_damaging(0.975) TCGA-DK-A3WW-01 9 95610035 95610035 C T ZNF484 Missense_Mutation p.R347K 0.23 tolerated(0.94) benign(0.031) TCGA-DK-A3WW-01 9 990886 990886 C T DMRT3 Missense_Mutation p.R434W 0.21 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DK-A3WW-01 9 99795232 99795232 C T CTSV Silent p.%3D 0.18 TCGA-DK-A3WW-01 X 103080330 103080330 C T RAB9B Missense_Mutation p.E129K 0.50 tolerated(0.14) benign(0.001) TCGA-DK-A3WW-01 X 106359089 106359089 C T RBM41 Intron 0.40 TCGA-DK-A3WW-01 X 11157176 11157176 C G ARHGAP6 Missense_Mutation p.G911A 0.75 tolerated_low_confidence(0.3) probably_damaging(0.938) TCGA-DK-A3WW-01 X 111698857 111698857 C T ZCCHC16 Missense_Mutation p.P301S 0.45 tolerated(0.06) probably_damaging(0.952) TCGA-DK-A3WW-01 X 117959628 117959628 C G ZCCHC12 Missense_Mutation p.Q141E 0.45 tolerated(0.3) benign(0.015) TCGA-DK-A3WW-01 X 119669775 119669775 G C CUL4B Missense_Mutation p.F708L 0.62 deleterious(0) probably_damaging(0.989) TCGA-DK-A3WW-01 X 1419439 1419439 G C CSF2RA Missense_Mutation p.R289T 0.21 deleterious(0.03) possibly_damaging(0.496) TCGA-DK-A3WW-01 X 147088242 147088242 C T FMR1NB Nonsense_Mutation p.Q140* 0.47 TCGA-DK-A3WW-01 X 149807437 149807437 G A MTM1 Missense_Mutation p.E156K 0.46 tolerated(1) benign(0.338) TCGA-DK-A3WW-01 X 1499937 1499937 C G IL3RA Silent p.L334L 0.26 TCGA-DK-A3WW-01 X 151358368 151358368 C A GABRA3 Missense_Mutation p.R326I 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A3WW-01 X 15311338 15311338 C G ASB11 Missense_Mutation p.Q158H 0.47 tolerated(0.43) benign(0.199) TCGA-DK-A3WW-01 X 15350096 15350096 G C PIGA 5'UTR 0.58 TCGA-DK-A3WW-01 X 155004416 155004416 G A SPRY3 3'UTR 0.19 TCGA-DK-A3WW-01 X 1719909 1719909 G A AKAP17A Missense_Mutation p.E504K 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-DK-A3WW-01 X 19560286 19560286 G A SH3KBP1 Missense_Mutation p.P550L 0.47 tolerated(0.1) benign(0.029) TCGA-DK-A3WW-01 X 19713821 19713821 C G SH3KBP1 Missense_Mutation p.K143N 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A3WW-01 X 2406874 2406874 G A ZBED1 Silent p.V629V 0.28 TCGA-DK-A3WW-01 X 37027545 37027545 C G FAM47C Silent p.L354L 0.57 TCGA-DK-A3WW-01 X 38525537 38525537 C T TSPAN7 Missense_Mutation p.R82C 0.31 deleterious(0) probably_damaging(0.977) TCGA-DK-A3WW-01 X 47082968 47082968 G A CDK16 Missense_Mutation p.M78I 0.50 deleterious_low_confidence(0.02) benign(0.028) TCGA-DK-A3WW-01 X 48846411 48846411 G A GRIPAP1 Missense_Mutation p.S232F 0.55 benign(0.004) TCGA-DK-A3WW-01 X 49227882 49227882 G A GAGE2C Missense_Mutation p.E42K 0.21 probably_damaging(0.995) TCGA-DK-A3WW-01 X 51150261 51150261 C T CXorf67 Silent p.H131H 0.55 TCGA-DK-A3WW-01 X 53222481 53222481 G T KDM5C Silent p.R1451R 0.53 TCGA-DK-A3WW-01 X 57021092 57021092 C G SPIN3 Missense_Mutation p.E97Q 0.45 deleterious(0.05) possibly_damaging(0.794) TCGA-DK-A3WW-01 X 65390566 65390566 C G HEPH Missense_Mutation p.L106V 0.41 tolerated(0.37) benign(0.013) TCGA-DK-A3WW-01 X 67938374 67938374 G A STARD8 Missense_Mutation p.E540K 0.50 deleterious(0.01) possibly_damaging(0.623) TCGA-DK-A3WW-01 X 70338683 70338683 C G MED12 Missense_Mutation p.Q27E 0.43 possibly_damaging(0.896) TCGA-DK-A3WW-01 X 70465551 70465551 C T ZMYM3 Missense_Mutation p.E943K 0.45 tolerated(0.05) benign(0.018) TCGA-DK-A3WW-01 X 71915560 71915560 G A PHKA1 Missense_Mutation p.S151L 0.46 deleterious(0) probably_damaging(0.986) TCGA-DK-A3WW-01 X 82763834 82763834 G A POU3F4 Missense_Mutation p.E168K 0.65 deleterious(0.04) benign(0.044) TCGA-DK-A3WW-01 X 83361413 83361413 C T RPS6KA6 Missense_Mutation p.R442Q 0.36 deleterious(0.03) possibly_damaging(0.899) TCGA-DK-A3WW-01 Y 15478205 15478205 G A UTY Missense_Mutation p.L270F 0.34 deleterious(0) probably_damaging(1) TCGA-DK-A3WX-01 10 114925750 114925750 C T TCF7L2 3'UTR 0.28 TCGA-DK-A3WX-01 10 89624226 89624226 C T PTEN 5'UTR 0.14 TCGA-DK-A3WX-01 11 108016949 108016950 - A ACAT1 Frame_Shift_Ins p.E345Rfs*10 0.17 TCGA-DK-A3WX-01 11 71195380 71195380 G T NADSYN1 Missense_Mutation p.D448Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-DK-A3WX-01 11 74415658 74415658 C A CHRDL2 Missense_Mutation p.K208N 0.13 tolerated(0.31) benign(0.425) TCGA-DK-A3WX-01 11 8947080 8947080 C T C11orf16 Silent p.Q378Q 0.19 TCGA-DK-A3WX-01 11 96117437 96117437 C A CCDC82 Missense_Mutation p.D159Y 0.19 deleterious(0.01) possibly_damaging(0.797) TCGA-DK-A3WX-01 12 14923664 14923664 G A HIST4H4 3'UTR 0.12 TCGA-DK-A3WX-01 12 48177866 48177866 C T HDAC7 Missense_Mutation p.D976N 0.13 tolerated(0.21) benign(0.24) TCGA-DK-A3WX-01 14 20612277 20612277 G A OR4N5 Missense_Mutation p.R128Q 0.15 tolerated(0.16) benign(0.006) TCGA-DK-A3WX-01 14 35234031 35234031 C G BAZ1A Missense_Mutation p.D1220H 0.11 deleterious_low_confidence(0.04) benign(0.021) TCGA-DK-A3WX-01 14 94845638 94845638 G A SERPINA1 Intron 0.22 TCGA-DK-A3WX-01 15 42193059 42193059 G A EHD4 Silent p.A470A 0.19 TCGA-DK-A3WX-01 16 89806552 89806552 C T ZNF276 3'Flank 0.18 TCGA-DK-A3WX-01 18 47800573 47800573 A G MBD1 Missense_Mutation p.C377R 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A3WX-01 19 30935717 30935717 C T ZNF536 Silent p.G416G 0.16 TCGA-DK-A3WX-01 19 50927009 50927009 G T SPIB Missense_Mutation p.A163S 0.32 tolerated(0.59) benign(0.219) TCGA-DK-A3WX-01 19 51984784 51984784 C T CEACAM18 Missense_Mutation p.R241W 0.22 deleterious(0) probably_damaging(0.965) TCGA-DK-A3WX-01 19 53431779 53431780 GT - ZNF321P 3'UTR 0.16 TCGA-DK-A3WX-01 1 111147111 111147111 C T KCNA2 Silent p.L98L 0.23 TCGA-DK-A3WX-01 1 186107047 186107047 C T HMCN1 Missense_Mutation p.R4623W 0.16 benign(0.438) TCGA-DK-A3WX-01 1 230391013 230391013 G A GALNT2 Silent p.P353P 0.15 TCGA-DK-A3WX-01 1 35579714 35579714 A C ZMYM1 Silent p.V761V 0.24 TCGA-DK-A3WX-01 1 45475257 45475257 C T HECTD3 Silent p.K286K 0.16 TCGA-DK-A3WX-01 1 7913462 7913462 G A UTS2 Silent p.L10L 0.17 TCGA-DK-A3WX-01 20 14306771 14306771 C T FLRT3 Missense_Mutation p.R461H 0.07 tolerated(0.18) benign(0.055) TCGA-DK-A3WX-01 20 61143501 61143501 G A C20orf166 5'Flank 0.16 TCGA-DK-A3WX-01 22 28195117 28195117 G A MN1 Missense_Mutation p.S472L 0.20 benign(0.062) TCGA-DK-A3WX-01 22 41566487 41566487 A G EP300 Missense_Mutation p.Q1455R 0.17 probably_damaging(0.99) TCGA-DK-A3WX-01 2 125521571 125521571 G A CNTNAP5 Missense_Mutation p.V793I 0.11 deleterious(0) benign(0.158) TCGA-DK-A3WX-01 2 15542413 15542413 T C NBAS Missense_Mutation p.I984V 0.08 tolerated(0.07) benign(0.124) TCGA-DK-A3WX-01 2 55792049 55792049 C G SMEK2 Missense_Mutation p.Q688H 0.17 deleterious(0.05) possibly_damaging(0.497) TCGA-DK-A3WX-01 3 120469446 120469446 G A GTF2E1 Missense_Mutation p.R16Q 0.05 tolerated(0.18) benign(0.219) TCGA-DK-A3WX-01 3 25686873 25686873 C T TOP2B Missense_Mutation p.R48K 0.27 tolerated(0.16) benign(0.009) TCGA-DK-A3WX-01 3 38739662 38739662 G - SCN10A Frame_Shift_Del p.N1684Tfs*14 0.19 TCGA-DK-A3WX-01 3 51967533 51967533 C T RRP9 Missense_Mutation p.A473T 0.21 tolerated_low_confidence(0.51) benign(0.006) TCGA-DK-A3WX-01 4 104640578 104640578 G A TACR3 Silent p.I85I 0.08 TCGA-DK-A3WX-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A3WX-01 5 132094169 132094169 G A SEPT8 Intron 0.15 TCGA-DK-A3WX-01 5 14485268 14485268 A G TRIO Missense_Mutation p.I2250V 0.13 benign(0.003) TCGA-DK-A3WX-01 5 145175868 145175868 G A PRELID2 Intron 0.15 TCGA-DK-A3WX-01 6 143755111 143755111 C A ADAT2 Missense_Mutation p.R70L 0.13 deleterious(0.03) probably_damaging(0.966) TCGA-DK-A3WX-01 6 149954043 149954043 C T KATNA1 Missense_Mutation p.E58K 0.07 tolerated(0.19) benign(0.248) TCGA-DK-A3WX-01 6 149954044 149954044 C T KATNA1 Silent p.Q57Q 0.07 TCGA-DK-A3WX-01 6 31629954 31629954 G C GPANK1 3'UTR 0.26 TCGA-DK-A3WX-01 6 31854612 31854612 C T EHMT2 Silent p.V727V 0.14 TCGA-DK-A3WX-01 6 31855596 31855596 C T EHMT2 Missense_Mutation p.E630K 0.12 tolerated(0.05) possibly_damaging(0.554) TCGA-DK-A3WX-01 6 33423481 33423481 G C ZBTB9 Missense_Mutation p.E202Q 0.15 deleterious(0.05) benign(0.241) TCGA-DK-A3WX-01 7 147092873 147092873 G A CNTNAP2 Splice_Site p.X557_splice 0.11 TCGA-DK-A3WX-01 7 20691117 20691117 A G ABCB5 Silent p.Q469Q 0.20 TCGA-DK-A3WX-01 7 44802942 44802942 C A ZMIZ2 Missense_Mutation p.S597Y 0.16 deleterious(0.02) possibly_damaging(0.757) TCGA-DK-A3WX-01 8 126087241 126087241 T - KIAA0196 Frame_Shift_Del p.Q326Rfs*20 0.11 TCGA-DK-A3WX-01 8 67514656 67514656 G A MYBL1 Silent p.D41D 0.22 TCGA-DK-A3WX-01 8 95952380 95952380 C T TP53INP1 Missense_Mutation p.E61K 0.28 tolerated(0.57) benign(0.003) TCGA-DK-A3WX-01 X 140995948 140995948 C T MAGEC1 Missense_Mutation p.L920F 0.20 deleterious(0) unknown(0) TCGA-DK-A3WX-01 X 48752377 48752377 C T TIMM17B Missense_Mutation p.R95Q 0.24 tolerated_low_confidence(0.37) benign(0.021) TCGA-DK-A3WY-01 13 33628236 33628236 G A KL Missense_Mutation p.M384I 0.05 tolerated(0.41) benign(0.026) TCGA-DK-A3WY-01 16 21210985 21210985 G A ZP2 Silent p.V611V 0.08 TCGA-DK-A3WY-01 17 41168147 41168147 C G VAT1 Missense_Mutation p.M371I 0.03 deleterious(0.02) benign(0.018) TCGA-DK-A3WY-01 17 67250492 67250492 C G ABCA5 Missense_Mutation p.G1403A 0.04 deleterious(0) probably_damaging(1) TCGA-DK-A3WY-01 19 13002715 13002715 C T GCDH Silent p.L66L 0.07 TCGA-DK-A3WY-01 19 30935719 30935719 G A ZNF536 Missense_Mutation p.G417D 0.06 tolerated(0.5) benign(0.092) TCGA-DK-A3WY-01 1 162368847 162368847 G C SH2D1B Missense_Mutation p.P77A 0.07 deleterious(0.03) benign(0.071) TCGA-DK-A3WY-01 20 33879832 33879832 G A FAM83C Silent p.S92S 0.10 TCGA-DK-A3WY-01 21 42839672 42839672 G A TMPRSS2 Nonsense_Mutation p.R523* 0.06 TCGA-DK-A3WY-01 22 41752381 41752381 G A ZC3H7B Silent p.L806L 0.04 TCGA-DK-A3WY-01 2 39240676 39240676 C G SOS1 Missense_Mutation p.E698Q 0.04 tolerated(0.06) probably_damaging(0.973) TCGA-DK-A3WY-01 3 151011992 151011992 C G GPR87 Missense_Mutation p.E348Q 0.07 tolerated(0.33) probably_damaging(0.997) TCGA-DK-A3WY-01 3 151012106 151012106 C G GPR87 Missense_Mutation p.D310H 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A3WY-01 3 50155783 50155783 G C RBM5 Missense_Mutation p.G781A 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3WY-01 3 50645942 50645942 G A CISH Nonsense_Mutation p.Q52* 0.12 TCGA-DK-A3WY-01 4 85617303 85617303 T C WDFY3 Silent p.L2907L 0.05 TCGA-DK-A3WY-01 6 161771157 161771157 T G PARK2 Missense_Mutation p.M458L 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-DK-A3WY-01 6 4116175 4116175 C T ECI2 Missense_Mutation p.G373E 0.08 tolerated(1) benign(0.001) TCGA-DK-A3WY-01 7 34851409 34851409 G A NPSR1 Missense_Mutation p.V138I 0.06 deleterious(0.03) probably_damaging(0.961) TCGA-DK-A3WY-01 7 50358661 50358661 G A IKZF1 Missense_Mutation p.D2N 0.04 tolerated(0.11) benign(0.004) TCGA-DK-A3WY-01 7 89938595 89938595 G C C7orf63 Missense_Mutation p.E857Q 0.07 tolerated(0.08) possibly_damaging(0.843) TCGA-DK-A3WY-01 8 124693557 124693557 G A ANXA13 Nonsense_Mutation p.Q333* 0.04 TCGA-DK-A3WY-01 9 131371450 131371450 G T SPTAN1 Nonsense_Mutation p.E1549* 0.07 TCGA-DK-A3X1-01 10 101992904 101992904 C T CWF19L1 3'UTR 0.33 TCGA-DK-A3X1-01 10 102045915 102045915 G A BLOC1S2 Silent p.I37I 0.22 TCGA-DK-A3X1-01 10 104129979 104129979 G C GBF1 Missense_Mutation p.E1129Q 0.45 deleterious(0.01) probably_damaging(0.968) TCGA-DK-A3X1-01 10 105207100 105207100 C T CALHM2 Missense_Mutation p.E261K 0.16 tolerated(1) benign(0.004) TCGA-DK-A3X1-01 10 118425186 118425186 G C C10orf82 Silent p.V69V 0.17 TCGA-DK-A3X1-01 10 121336394 121336394 C G TIAL1 Intron 0.17 TCGA-DK-A3X1-01 10 122622425 122622425 G A WDR11 Silent p.E235E 0.38 TCGA-DK-A3X1-01 10 128193522 128193522 G T C10orf90 Missense_Mutation p.H83N 0.26 tolerated(0.35) benign(0.211) TCGA-DK-A3X1-01 10 129913840 129913840 C G MKI67 Missense_Mutation p.D278H 0.35 tolerated(0.11) benign(0.34) TCGA-DK-A3X1-01 10 134942263 134942263 G A GPR123 Missense_Mutation p.E311K 0.30 deleterious(0.01) benign(0.275) TCGA-DK-A3X1-01 10 13534731 13534731 C G BEND7 Missense_Mutation p.E187D 0.11 tolerated_low_confidence(0.09) benign(0.036) TCGA-DK-A3X1-01 10 18690931 18690931 G C CACNB2 Missense_Mutation p.E98Q 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A3X1-01 10 27318254 27318254 G C ANKRD26 Missense_Mutation p.A1280G 0.26 deleterious(0) possibly_damaging(0.772) TCGA-DK-A3X1-01 10 295129 295129 C T ZMYND11 Intron 0.17 TCGA-DK-A3X1-01 10 46963916 46963916 G A SYT15 Silent p.F349F 0.11 TCGA-DK-A3X1-01 10 48429210 48429210 C A GDF10 Missense_Mutation p.D226Y 0.19 deleterious(0.02) probably_damaging(0.954) TCGA-DK-A3X1-01 10 4877927 4877927 C G AKR1E2 Missense_Mutation p.R129G 0.22 tolerated(1) benign(0) TCGA-DK-A3X1-01 10 64937590 64937590 C T JMJD1C Missense_Mutation p.D2371N 0.24 deleterious(0.01) possibly_damaging(0.69) TCGA-DK-A3X1-01 10 6540507 6540507 C A PRKCQ Missense_Mutation p.M131I 0.34 tolerated(0.31) benign(0) TCGA-DK-A3X1-01 10 69672284 69672284 C T SIRT1 Missense_Mutation p.H471Y 0.46 deleterious(0.03) possibly_damaging(0.757) TCGA-DK-A3X1-01 10 70670973 70670973 G C DDX50 Missense_Mutation p.E204Q 0.19 tolerated(1) benign(0.115) TCGA-DK-A3X1-01 10 74034957 74034957 G A DDIT4 3'UTR 0.47 TCGA-DK-A3X1-01 10 75239090 75239090 C G PPP3CB Missense_Mutation p.E91Q 0.24 tolerated(0.07) benign(0.064) TCGA-DK-A3X1-01 10 76818074 76818074 C T DUPD1 Missense_Mutation p.E67K 0.24 tolerated(0.3) probably_damaging(0.964) TCGA-DK-A3X1-01 10 79781696 79781696 C G POLR3A Missense_Mutation p.E324Q 0.09 tolerated(0.08) benign(0.261) TCGA-DK-A3X1-01 10 90356673 90356673 G T LIPJ Missense_Mutation p.D235Y 0.17 deleterious(0) probably_damaging(0.954) TCGA-DK-A3X1-01 10 91353615 91353615 C T PANK1 Missense_Mutation p.G481E 0.31 deleterious(0.05) probably_damaging(1) TCGA-DK-A3X1-01 10 95266787 95266787 C G CEP55 Missense_Mutation p.H168D 0.21 tolerated(0.22) benign(0.366) TCGA-DK-A3X1-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.46 TCGA-DK-A3X1-01 10 99125901 99125901 C T RRP12 Missense_Mutation p.D1161N 0.26 deleterious(0.02) benign(0.04) TCGA-DK-A3X1-01 11 102100566 102100566 G C YAP1 Silent p.L470L 0.11 TCGA-DK-A3X1-01 11 1028259 1028259 C G MUC6 Missense_Mutation p.E574Q 0.36 unknown(0) TCGA-DK-A3X1-01 11 10327968 10327968 G A ADM Missense_Mutation p.G113E 0.20 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 11 107959270 107959270 C G CUL5 Missense_Mutation p.Q399E 0.14 tolerated(0.33) benign(0.42) TCGA-DK-A3X1-01 11 108381565 108381565 C G EXPH5 Missense_Mutation p.D1557H 0.15 deleterious(0.01) probably_damaging(0.959) TCGA-DK-A3X1-01 11 110134918 110134918 G C RDX Missense_Mutation p.F78L 0.39 tolerated(0.06) possibly_damaging(0.838) TCGA-DK-A3X1-01 11 110450129 110450129 C T ARHGAP20 Missense_Mutation p.D1181N 0.15 tolerated_low_confidence(0.1) benign(0.006) TCGA-DK-A3X1-01 11 111889856 111889856 C G DIXDC1 3'UTR 0.27 TCGA-DK-A3X1-01 11 111965691 111965691 C G SDHD Silent p.L159L 0.25 TCGA-DK-A3X1-01 11 117023231 117023231 G C PAFAH1B2 Missense_Mutation p.R23P 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 11 117859132 117859132 G C IL10RA Missense_Mutation p.E35Q 0.21 deleterious(0.05) possibly_damaging(0.841) TCGA-DK-A3X1-01 11 118221328 118221328 C T CD3G Silent p.I123I 0.20 TCGA-DK-A3X1-01 11 118369132 118369132 C T KMT2A Silent p.L1950L 0.36 TCGA-DK-A3X1-01 11 118375134 118375134 G A KMT2A Missense_Mutation p.D2843N 0.29 probably_damaging(0.995) TCGA-DK-A3X1-01 11 118390358 118390358 G A KMT2A Silent p.G3724G 0.11 TCGA-DK-A3X1-01 11 118390449 118390449 G T KMT2A Nonsense_Mutation p.E3755* 0.12 TCGA-DK-A3X1-01 11 118827612 118827612 C G UPK2 Silent p.L32L 0.14 TCGA-DK-A3X1-01 11 118827675 118827675 C T UPK2 Silent p.L53L 0.11 TCGA-DK-A3X1-01 11 118889490 118889490 G T TRAPPC4 5'UTR 0.12 TCGA-DK-A3X1-01 11 118889918 118889918 G C TRAPPC4 Missense_Mutation p.E81Q 0.15 tolerated(0.15) benign(0.011) TCGA-DK-A3X1-01 11 119149302 119149302 G T CBL Missense_Mutation p.R437I 0.30 deleterious(0) benign(0.194) TCGA-DK-A3X1-01 11 119149399 119149399 G A CBL Missense_Mutation p.M469I 0.27 tolerated(0.11) benign(0) TCGA-DK-A3X1-01 11 121384943 121384943 C G SORL1 Nonsense_Mutation p.S375* 0.16 TCGA-DK-A3X1-01 11 121424706 121424706 C T SORL1 Missense_Mutation p.S776L 0.26 deleterious(0) benign(0.017) TCGA-DK-A3X1-01 11 122848503 122848503 C A BSX Nonsense_Mutation p.E186* 0.17 TCGA-DK-A3X1-01 11 124933296 124933296 C T SLC37A2 Silent p.F11F 0.26 TCGA-DK-A3X1-01 11 129752028 129752028 G A NFRKB Missense_Mutation p.L407F 0.51 deleterious(0.04) unknown(0) TCGA-DK-A3X1-01 11 17139154 17139154 G C PIK3C2A Missense_Mutation p.L1034V 0.19 deleterious(0.05) possibly_damaging(0.816) TCGA-DK-A3X1-01 11 17532038 17532038 C T USH1C Missense_Mutation p.E482K 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.471) TCGA-DK-A3X1-01 11 1775286 1775286 G C CTSD Missense_Mutation p.P304A 0.21 deleterious(0) probably_damaging(0.982) TCGA-DK-A3X1-01 11 1862395 1862395 G C TNNI2 Silent p.L137L 0.38 TCGA-DK-A3X1-01 11 2432724 2432724 C A TRPM5 Silent p.L880L 0.18 TCGA-DK-A3X1-01 11 26463525 26463525 C T ANO3 Missense_Mutation p.S36F 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A3X1-01 11 27378991 27378991 C T CCDC34 Missense_Mutation p.E153K 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A3X1-01 11 30601972 30601972 G A MPPED2 5'UTR 0.31 TCGA-DK-A3X1-01 11 36248961 36248961 G T LDLRAD3 Nonsense_Mutation p.E261* 0.09 TCGA-DK-A3X1-01 11 3733729 3733729 G C NUP98 Intron 0.22 TCGA-DK-A3X1-01 11 48285748 48285748 C G OR4X1 Silent p.L112L 0.14 TCGA-DK-A3X1-01 11 494652 494652 G A RNH1 3'UTR 0.39 TCGA-DK-A3X1-01 11 498609 498609 G A RNH1 Silent p.I268I 0.43 TCGA-DK-A3X1-01 11 5221178 5221178 G A OR51V1 Silent p.I251I 0.29 TCGA-DK-A3X1-01 11 55587800 55587800 T C OR5D18 Missense_Mutation p.V232A 0.13 tolerated(1) benign(0.001) TCGA-DK-A3X1-01 11 55798344 55798344 C T OR5AS1 Silent p.F150F 0.07 TCGA-DK-A3X1-01 11 56345151 56345151 C T OR5M10 Missense_Mutation p.G16E 0.27 deleterious(0) possibly_damaging(0.901) TCGA-DK-A3X1-01 11 56345152 56345152 C T OR5M10 Missense_Mutation p.G16R 0.27 deleterious(0.02) benign(0.242) TCGA-DK-A3X1-01 11 57099862 57099862 C T SSRP1 Missense_Mutation p.M289I 0.16 tolerated(0.11) benign(0.014) TCGA-DK-A3X1-01 11 58391557 58391557 G A CNTF Silent p.G55G 0.15 TCGA-DK-A3X1-01 11 58391595 58391595 C A CNTF Missense_Mutation p.T68N 0.15 deleterious(0.03) benign(0.08) TCGA-DK-A3X1-01 11 59132261 59132261 G C OR5AN1 Silent p.L110L 0.09 TCGA-DK-A3X1-01 11 59211279 59211279 C T OR5A1 Missense_Mutation p.S213L 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 11 61017253 61017253 G T PGA5 Missense_Mutation p.D296Y 0.16 tolerated(1) benign(0.006) TCGA-DK-A3X1-01 11 61548506 61548506 C G MYRF Missense_Mutation p.S854C 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.77) TCGA-DK-A3X1-01 11 61624491 61624491 G C FADS2 Missense_Mutation p.K251N 0.14 tolerated(0.05) benign(0.297) TCGA-DK-A3X1-01 11 61646279 61646279 G C FADS3 Missense_Mutation p.S188C 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3X1-01 11 62402467 62402467 G C GANAB Missense_Mutation p.S129C 0.17 tolerated(0.05) possibly_damaging(0.879) TCGA-DK-A3X1-01 11 62763271 62763271 C T SLC22A8 Silent p.Q302Q 0.20 TCGA-DK-A3X1-01 11 63520106 63520106 G C RTN3 Missense_Mutation p.D956H 0.19 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 11 63594565 63594565 C A C11orf84 Missense_Mutation p.S367Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-DK-A3X1-01 11 64033997 64033997 C T PLCB3 Silent p.I1129I 0.30 TCGA-DK-A3X1-01 11 64573830 64573830 G A MEN1 Missense_Mutation p.S313L 0.34 deleterious(0.01) benign(0.109) TCGA-DK-A3X1-01 11 64662834 64662834 C T ATG2A Silent p.R1836R 0.24 TCGA-DK-A3X1-01 11 64702236 64702236 G A GPHA2 3'UTR 0.21 TCGA-DK-A3X1-01 11 65271458 65271458 G C MALAT1 RNA 0.19 TCGA-DK-A3X1-01 11 65325173 65325173 C G LTBP3 Missense_Mutation p.Q86H 0.07 deleterious(0.03) benign(0) TCGA-DK-A3X1-01 11 65348558 65348558 G A EHBP1L1 Missense_Mutation p.E222K 0.21 deleterious(0.02) probably_damaging(0.979) TCGA-DK-A3X1-01 11 65359444 65359444 C G EHBP1L1 Intron 0.22 TCGA-DK-A3X1-01 11 65998061 65998061 C G PACS1 Missense_Mutation p.L473V 0.14 tolerated(0.66) benign(0.033) TCGA-DK-A3X1-01 11 66444533 66444533 G A RBM4B Silent p.I6I 0.14 TCGA-DK-A3X1-01 11 66466202 66466202 C T SPTBN2 Missense_Mutation p.E1308K 0.14 deleterious(0.04) probably_damaging(0.983) TCGA-DK-A3X1-01 11 66627177 66627177 C A LRFN4 Nonsense_Mutation p.C473* 0.29 TCGA-DK-A3X1-01 11 66627252 66627252 C A LRFN4 Silent p.S498S 0.33 TCGA-DK-A3X1-01 11 66627354 66627354 C G LRFN4 Silent p.V532V 0.24 TCGA-DK-A3X1-01 11 66627411 66627411 C G LRFN4 Silent p.L551L 0.34 TCGA-DK-A3X1-01 11 67377958 67377958 G C NDUFV1 Missense_Mutation p.C206S 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A3X1-01 11 7021665 7021665 C G ZNF214 Missense_Mutation p.E417Q 0.40 tolerated(0.14) benign(0.16) TCGA-DK-A3X1-01 11 71238672 71238672 C G KRTAP5-7 Nonsense_Mutation p.S109* 0.27 TCGA-DK-A3X1-01 11 71726869 71726869 C G NUMA1 Silent p.L560L 0.16 TCGA-DK-A3X1-01 11 72466776 72466776 C T STARD10 Silent p.V200V 0.28 TCGA-DK-A3X1-01 11 73686631 73686631 C T UCP2 Silent p.T240T 0.23 TCGA-DK-A3X1-01 11 76825378 76825378 G C CAPN5 Silent p.L199L 0.12 TCGA-DK-A3X1-01 11 76869381 76869381 C T MYO7A Missense_Mutation p.S303F 0.24 deleterious(0) possibly_damaging(0.857) TCGA-DK-A3X1-01 11 77301476 77301476 C T AQP11 Missense_Mutation p.H147Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 11 78270590 78270590 G C NARS2 Missense_Mutation p.L197V 0.15 tolerated(1) benign(0.001) TCGA-DK-A3X1-01 11 78433937 78433937 C G TENM4 Missense_Mutation p.E1192D 0.40 deleterious(0.01) possibly_damaging(0.876) TCGA-DK-A3X1-01 11 89885637 89885637 G A NAALAD2 Missense_Mutation p.G261S 0.31 deleterious(0.01) probably_damaging(1) TCGA-DK-A3X1-01 11 93097339 93097339 C G CCDC67 Missense_Mutation p.T104R 0.17 tolerated(0.25) probably_damaging(1) TCGA-DK-A3X1-01 11 94328539 94328539 C G PIWIL4 Silent p.L405L 0.14 TCGA-DK-A3X1-01 11 96124003 96124003 C G JRKL Missense_Mutation p.L64V 0.14 tolerated(0.28) benign(0.2) TCGA-DK-A3X1-01 11 99827554 99827554 G T CNTN5 Missense_Mutation p.W230C 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 12 101442134 101442134 G A ANO4 Missense_Mutation p.D388N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A3X1-01 12 101702091 101702091 G C UTP20 Missense_Mutation p.Q708H 0.21 tolerated(0.18) benign(0.013) TCGA-DK-A3X1-01 12 10560085 10560085 G A KLRC4 3'UTR 0.50 TCGA-DK-A3X1-01 12 108685927 108685927 G A CMKLR1 Silent p.L271L 0.17 TCGA-DK-A3X1-01 12 109577219 109577219 G A ACACB Silent p.L3L 0.43 TCGA-DK-A3X1-01 12 112187122 112187122 G C ACAD10 Missense_Mutation p.E961D 0.14 deleterious(0.01) benign(0.055) TCGA-DK-A3X1-01 12 11243895 11243895 G A TAS2R43 3'UTR 0.32 TCGA-DK-A3X1-01 12 113348980 113348980 G A OAS1 Silent p.L198L 0.15 TCGA-DK-A3X1-01 12 121454196 121454196 C T C12orf43 Missense_Mutation p.E28K 0.32 deleterious(0.03) benign(0.017) TCGA-DK-A3X1-01 12 121711915 121711915 G C CAMKK2 Missense_Mutation p.R139G 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 12 124298139 124298139 C A DNAH10 Silent p.L1073L 0.17 TCGA-DK-A3X1-01 12 125270804 125270804 C G SCARB1 Intron 0.19 TCGA-DK-A3X1-01 12 12673996 12673996 C T DUSP16 Missense_Mutation p.E13K 0.19 tolerated(0.91) benign(0.011) TCGA-DK-A3X1-01 12 131357396 131357396 G T RAN Missense_Mutation p.D18Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-DK-A3X1-01 12 13238096 13238096 G C GSG1 Missense_Mutation p.F253L 0.09 deleterious(0.02) probably_damaging(0.98) TCGA-DK-A3X1-01 12 132625003 132625003 C T DDX51 Missense_Mutation p.M546I 0.27 deleterious(0.03) benign(0.002) TCGA-DK-A3X1-01 12 133198625 133198625 C G P2RX2 3'Flank 0.19 TCGA-DK-A3X1-01 12 133277849 133277849 C A PXMP2 Nonsense_Mutation p.S138* 0.13 TCGA-DK-A3X1-01 12 14927359 14927359 G A H2AFJ 5'UTR 0.23 TCGA-DK-A3X1-01 12 22697070 22697070 C T C2CD5 Silent p.L5L 0.29 TCGA-DK-A3X1-01 12 26714780 26714780 C A ITPR2 Missense_Mutation p.R1579I 0.15 deleterious(0.02) benign(0.14) TCGA-DK-A3X1-01 12 2797857 2797857 G T CACNA1C Missense_Mutation p.R2058I 0.15 tolerated_low_confidence(0.27) benign(0.421) TCGA-DK-A3X1-01 12 29604325 29604325 G C OVCH1 Nonsense_Mutation p.S903* 0.14 TCGA-DK-A3X1-01 12 29659721 29659721 C A TMTC1 3'Flank 0.34 TCGA-DK-A3X1-01 12 39726897 39726897 G A KIF21A Missense_Mutation p.R834C 0.33 deleterious(0) probably_damaging(0.991) TCGA-DK-A3X1-01 12 39751995 39751995 G C KIF21A Silent p.L400L 0.15 TCGA-DK-A3X1-01 12 40001459 40001459 C T ABCD2 Missense_Mutation p.R393Q 0.26 deleterious(0) possibly_damaging(0.82) TCGA-DK-A3X1-01 12 41312446 41312446 G A CNTN1 Missense_Mutation p.E34K 0.16 tolerated(0.31) benign(0.021) TCGA-DK-A3X1-01 12 45567593 45567593 C T PLEKHA8P1 RNA 0.41 TCGA-DK-A3X1-01 12 4643350 4643350 C T C12orf4 Silent p.A99A 0.36 TCGA-DK-A3X1-01 12 48179309 48179309 C T AC004466.1 Silent p.L131L 0.26 TCGA-DK-A3X1-01 12 48358114 48358114 A T TMEM106C Missense_Mutation p.E32V 0.17 tolerated(0.13) benign(0.076) TCGA-DK-A3X1-01 12 48482603 48482603 C T SENP1 Missense_Mutation p.E121K 0.31 deleterious(0.01) benign(0.078) TCGA-DK-A3X1-01 12 48597027 48597027 G T OR10AD1 Missense_Mutation p.Q17K 0.10 deleterious(0) benign(0.014) TCGA-DK-A3X1-01 12 49420241 49420241 G A KMT2D Nonsense_Mutation p.Q5170* 0.10 TCGA-DK-A3X1-01 12 50047084 50047084 C G FMNL3 Missense_Mutation p.E416D 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A3X1-01 12 50570907 50570907 G C LIMA1 Silent p.L741L 0.18 TCGA-DK-A3X1-01 12 52882123 52882123 A G KRT6A Silent p.G471G 0.16 TCGA-DK-A3X1-01 12 52913532 52913532 G A KRT5 Silent p.I183I 0.21 TCGA-DK-A3X1-01 12 53607282 53607282 C T RARG Missense_Mutation p.G339E 0.22 deleterious(0.02) possibly_damaging(0.665) TCGA-DK-A3X1-01 12 53607319 53607319 C T RARG Missense_Mutation p.E327K 0.32 deleterious(0) probably_damaging(0.986) TCGA-DK-A3X1-01 12 53607325 53607325 C T RARG Missense_Mutation p.D325N 0.34 deleterious(0) probably_damaging(0.911) TCGA-DK-A3X1-01 12 53608227 53608227 C A RARG Intron 0.30 TCGA-DK-A3X1-01 12 53608271 53608271 C T RARG Missense_Mutation p.E199K 0.30 deleterious(0.04) possibly_damaging(0.834) TCGA-DK-A3X1-01 12 53608346 53608346 C T RARG Missense_Mutation p.E174K 0.29 tolerated(0.52) benign(0.101) TCGA-DK-A3X1-01 12 53608349 53608349 C T RARG Missense_Mutation p.E173K 0.30 tolerated(0.83) benign(0.006) TCGA-DK-A3X1-01 12 53722170 53722170 C T SP7 Silent p.K352K 0.20 TCGA-DK-A3X1-01 12 53776785 53776785 C T SP1 Nonsense_Mutation p.Q352* 0.14 TCGA-DK-A3X1-01 12 53777068 53777068 C G SP1 Missense_Mutation p.S446C 0.17 deleterious(0.01) possibly_damaging(0.506) TCGA-DK-A3X1-01 12 53825228 53825228 C T AMHR2 Nonsense_Mutation p.Q565* 0.43 TCGA-DK-A3X1-01 12 53881144 53881144 G A MAP3K12 Missense_Mutation p.S11F 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A3X1-01 12 54403245 54403245 C G HOXC8 Missense_Mutation p.F59L 0.15 tolerated(0.12) benign(0.046) TCGA-DK-A3X1-01 12 54917701 54917701 C G NCKAP1L Missense_Mutation p.S706C 0.12 deleterious(0.01) possibly_damaging(0.796) TCGA-DK-A3X1-01 12 56347534 56347534 C A DGKA Missense_Mutation p.F730L 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A3X1-01 12 56552135 56552135 G C MYL6 5'UTR 0.22 TCGA-DK-A3X1-01 12 56618691 56618691 G T NABP2 Silent p.L17L 0.10 TCGA-DK-A3X1-01 12 56704347 56704347 C G CNPY2 Missense_Mutation p.D180H 0.15 tolerated(0.12) benign(0.028) TCGA-DK-A3X1-01 12 56715866 56715866 C T PAN2 Silent p.L932L 0.39 TCGA-DK-A3X1-01 12 58087922 58087922 C T OS9 5'UTR 0.36 TCGA-DK-A3X1-01 12 6647477 6647477 G C GAPDH 3'UTR 0.25 TCGA-DK-A3X1-01 12 6675398 6675398 C A NOP2 Nonsense_Mutation p.E115* 0.20 TCGA-DK-A3X1-01 12 674518 674518 G A NINJ2 Silent p.L150L 0.16 TCGA-DK-A3X1-01 12 6804697 6804697 G T PIANP Missense_Mutation p.F242L 0.19 tolerated_low_confidence(0.11) benign(0.003) TCGA-DK-A3X1-01 12 6954828 6954828 G A GNB3 Missense_Mutation p.E260K 0.26 deleterious(0) probably_damaging(0.932) TCGA-DK-A3X1-01 12 71978178 71978178 C T LGR5 Silent p.I796I 0.11 TCGA-DK-A3X1-01 12 76750481 76750481 C A OSBPL8 Missense_Mutation p.R821I 0.29 tolerated(0.08) possibly_damaging(0.548) TCGA-DK-A3X1-01 12 80764458 80764458 G A OTOGL Missense_Mutation p.E2233K 0.13 deleterious(0) probably_damaging(0.983) TCGA-DK-A3X1-01 12 82793045 82793045 G A METTL25 Missense_Mutation p.E335K 0.07 tolerated(0.38) benign(0.009) TCGA-DK-A3X1-01 12 8329747 8329747 C G ZNF705A Missense_Mutation p.F157L 0.16 tolerated(1) benign(0) TCGA-DK-A3X1-01 12 88420760 88420760 G T C12orf50 5'UTR 0.11 TCGA-DK-A3X1-01 12 89996871 89996871 G A ATP2B1 Silent p.I1003I 0.27 TCGA-DK-A3X1-01 12 9305777 9305777 C G PZP Missense_Mutation p.E1313Q 0.30 tolerated(0.21) probably_damaging(0.979) TCGA-DK-A3X1-01 12 9321515 9321515 G C PZP Nonsense_Mutation p.S686* 0.12 TCGA-DK-A3X1-01 13 103286425 103286425 G A TPP2 Missense_Mutation p.G457E 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 13 103343288 103343288 G A METTL21C Missense_Mutation p.H53Y 0.17 deleterious(0.04) benign(0.081) TCGA-DK-A3X1-01 13 111156284 111156284 G A COL4A2 Missense_Mutation p.R1410Q 0.26 possibly_damaging(0.553) TCGA-DK-A3X1-01 13 113887597 113887597 G A CUL4A Missense_Mutation p.E207K 0.15 deleterious(0.01) benign(0.045) TCGA-DK-A3X1-01 13 114765114 114765114 C T RASA3 Missense_Mutation p.E627K 0.09 tolerated(1) possibly_damaging(0.574) TCGA-DK-A3X1-01 13 22077089 22077089 C G MICU2 Silent p.V303V 0.11 TCGA-DK-A3X1-01 13 24460591 24460591 C - MIPEP Frame_Shift_Del p.E82Kfs*4 0.13 TCGA-DK-A3X1-01 13 24868970 24868970 G C SPATA13 Missense_Mutation p.K1058N 0.13 deleterious(0.01) possibly_damaging(0.798) TCGA-DK-A3X1-01 13 24890172 24890172 G A C1QTNF9 Missense_Mutation p.E11K 0.10 tolerated(0.9) benign(0.001) TCGA-DK-A3X1-01 13 25266996 25266996 G A ATP12A Missense_Mutation p.E453K 0.12 tolerated(0.25) probably_damaging(0.929) TCGA-DK-A3X1-01 13 25744264 25744264 G C AMER2 Missense_Mutation p.I498M 0.11 tolerated(0.06) benign(0.132) TCGA-DK-A3X1-01 13 32811880 32811880 G C FRY Missense_Mutation p.E2059Q 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 13 32915107 32915107 G T BRCA2 Silent p.V2205V 0.31 TCGA-DK-A3X1-01 13 33628033 33628033 C G KL Missense_Mutation p.Q317E 0.33 deleterious(0) probably_damaging(0.991) TCGA-DK-A3X1-01 13 39433440 39433440 A G FREM2 Missense_Mutation p.Y2411C 0.21 deleterious(0) probably_damaging(0.956) TCGA-DK-A3X1-01 13 41341064 41341064 C G MRPS31 Missense_Mutation p.E86D 0.26 deleterious(0.04) possibly_damaging(0.641) TCGA-DK-A3X1-01 13 41706670 41706670 G A KBTBD6 5'UTR 0.25 TCGA-DK-A3X1-01 13 48947603 48947603 C G RB1 Nonsense_Mutation p.S397* 0.10 TCGA-DK-A3X1-01 13 53191669 53191669 C A HNRNPA1L2 5'UTR 0.44 TCGA-DK-A3X1-01 13 73636016 73636016 G C KLF5 Missense_Mutation p.E93D 0.14 tolerated(1) possibly_damaging(0.899) TCGA-DK-A3X1-01 13 78130748 78130748 C G SCEL Missense_Mutation p.Q21E 0.14 tolerated(0.12) benign(0.066) TCGA-DK-A3X1-01 13 97986587 97986587 C T MBNL2 Nonsense_Mutation p.Q78* 0.30 TCGA-DK-A3X1-01 14 101348170 101348170 C T RTL1 Missense_Mutation p.E986K 0.13 tolerated(0.83) benign(0.016) TCGA-DK-A3X1-01 14 101495984 101495984 G A MIR494 RNA 0.55 TCGA-DK-A3X1-01 14 104165273 104165273 G T XRCC3 Silent p.L301L 0.43 TCGA-DK-A3X1-01 14 104201510 104201510 C T PPP1R13B Missense_Mutation p.R1085Q 0.13 deleterious(0) probably_damaging(0.994) TCGA-DK-A3X1-01 14 104464977 104464977 G C TDRD9 Missense_Mutation p.L465F 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 14 105927222 105927222 G C MTA1 Missense_Mutation p.E292Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-DK-A3X1-01 14 20928361 20928361 G T TMEM55B Silent p.R151R 0.41 TCGA-DK-A3X1-01 14 21899343 21899343 G A CHD8 Nonsense_Mutation p.Q154* 0.62 TCGA-DK-A3X1-01 14 21979365 21979365 T C METTL3 Translation_Start_Site p.M1? 0.29 deleterious(0) probably_damaging(0.985) TCGA-DK-A3X1-01 14 36982412 36982412 G A SFTA3 5'UTR 0.50 TCGA-DK-A3X1-01 14 45693438 45693438 C T MIS18BP1 Silent p.R784R 0.40 TCGA-DK-A3X1-01 14 53178177 53178177 G A PSMC6 Missense_Mutation p.D140N 0.45 tolerated(0.08) benign(0.03) TCGA-DK-A3X1-01 14 60591695 60591695 G C PCNXL4 Missense_Mutation p.D702H 0.30 deleterious(0) possibly_damaging(0.779) TCGA-DK-A3X1-01 14 65041219 65041219 G C PPP1R36 Missense_Mutation p.E194Q 0.24 tolerated(0.1) benign(0.269) TCGA-DK-A3X1-01 14 72200447 72200447 C T SIPA1L1 Silent p.P1663P 0.33 TCGA-DK-A3X1-01 14 73581010 73581010 C T RBM25 Missense_Mutation p.S803L 0.36 possibly_damaging(0.637) TCGA-DK-A3X1-01 14 73712862 73712862 C T PAPLN Missense_Mutation p.R105W 0.19 deleterious(0) possibly_damaging(0.84) TCGA-DK-A3X1-01 14 74036029 74036029 C G ACOT2 Missense_Mutation p.R29G 0.52 deleterious_low_confidence(0.01) benign(0.386) TCGA-DK-A3X1-01 14 75359643 75359643 G C DLST Missense_Mutation p.Q183H 0.12 tolerated(0.1) benign(0.037) TCGA-DK-A3X1-01 14 75470262 75470262 G A EIF2B2 Missense_Mutation p.G98E 0.47 tolerated(0.14) probably_damaging(0.916) TCGA-DK-A3X1-01 14 75475859 75475859 G A EIF2B2 Missense_Mutation p.E342K 0.14 deleterious(0) probably_damaging(0.984) TCGA-DK-A3X1-01 14 75475914 75475914 G T EIF2B2 3'UTR 0.12 TCGA-DK-A3X1-01 14 76045894 76045894 C T FLVCR2 Silent p.F193F 0.46 TCGA-DK-A3X1-01 14 77712285 77712285 C G TMEM63C Nonsense_Mutation p.S484* 0.07 TCGA-DK-A3X1-01 14 94394796 94394796 C A FAM181A Silent p.L117L 0.43 TCGA-DK-A3X1-01 14 95234906 95234906 C T GSC Nonsense_Mutation p.W232* 0.12 TCGA-DK-A3X1-01 14 96134726 96134726 C A TCL6 Intron 0.14 TCGA-DK-A3X1-01 14 96792138 96792138 C T ATG2B Missense_Mutation p.R762Q 0.24 deleterious(0.01) probably_damaging(0.921) TCGA-DK-A3X1-01 14 96807901 96807901 C T ATG2B Silent p.L294L 0.49 TCGA-DK-A3X1-01 14 96944839 96944839 G A AK7 Silent p.L531L 0.12 TCGA-DK-A3X1-01 14 97009217 97009217 G A PAPOLA Missense_Mutation p.E426K 0.11 tolerated(0.08) benign(0.072) TCGA-DK-A3X1-01 15 33359341 33359341 G A FMN1 Nonsense_Mutation p.Q249* 0.32 TCGA-DK-A3X1-01 15 34649344 34649344 C T NUTM1 Silent p.L1017L 0.21 TCGA-DK-A3X1-01 15 40913088 40913088 C T CASC5 Missense_Mutation p.S235L 0.15 deleterious(0.03) benign(0.024) TCGA-DK-A3X1-01 15 41044242 41044242 C A RMDN3 Missense_Mutation p.V108L 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 15 42046702 42046702 C T MGA Missense_Mutation p.S2359L 0.38 deleterious(0) possibly_damaging(0.58) TCGA-DK-A3X1-01 15 42185575 42185575 C T SPTBN5 Missense_Mutation p.E41K 0.18 probably_damaging(0.999) TCGA-DK-A3X1-01 15 43739643 43739643 G A TP53BP1 Silent p.I919I 0.34 TCGA-DK-A3X1-01 15 43814035 43814035 G A MAP1A Missense_Mutation p.D122N 0.23 probably_damaging(0.998) TCGA-DK-A3X1-01 15 44849735 44849735 G C EIF3J Missense_Mutation p.R153T 0.20 deleterious(0) probably_damaging(0.953) TCGA-DK-A3X1-01 15 44900791 44900791 C A SPG11 Nonsense_Mutation p.E1102* 0.15 TCGA-DK-A3X1-01 15 45424173 45424173 C T DUOX1 Silent p.F3F 0.19 TCGA-DK-A3X1-01 15 48720649 48720649 C T FBN1 Silent p.T2297T 0.13 TCGA-DK-A3X1-01 15 48791227 48791227 G C FBN1 Missense_Mutation p.Q708E 0.17 benign(0.339) TCGA-DK-A3X1-01 15 52155025 52155025 G C TMOD3 5'UTR 0.13 TCGA-DK-A3X1-01 15 53081808 53081808 C A ONECUT1 Nonsense_Mutation p.E92* 0.43 TCGA-DK-A3X1-01 15 65687479 65687479 C T IGDCC4 Missense_Mutation p.G510E 0.21 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 15 68596209 68596209 G T ITGA11 Silent p.I1132I 0.19 TCGA-DK-A3X1-01 15 70347433 70347433 G T TLE3 Silent p.I514I 0.22 TCGA-DK-A3X1-01 15 73409170 73409170 C T NEO1 Silent p.I140I 0.20 TCGA-DK-A3X1-01 15 74749005 74749005 G T UBL7 Silent p.I64I 0.11 TCGA-DK-A3X1-01 15 74751198 74751198 G A UBL7 Missense_Mutation p.S4L 0.18 deleterious_low_confidence(0) benign(0.096) TCGA-DK-A3X1-01 15 77057793 77057793 G A SCAPER Missense_Mutation p.R500C 0.32 deleterious(0) probably_damaging(0.992) TCGA-DK-A3X1-01 15 78219093 78219093 G C RP11-114H24.7 3'Flank 0.36 TCGA-DK-A3X1-01 15 78386496 78386496 C T SH2D7 Silent p.F73F 0.21 TCGA-DK-A3X1-01 15 80465456 80465456 C T FAH Silent p.L269L 0.30 TCGA-DK-A3X1-01 15 89382250 89382250 G A ACAN Missense_Mutation p.E143K 0.19 tolerated(0.21) unknown(0) TCGA-DK-A3X1-01 15 89867416 89867416 C A POLG Silent p.G664G 0.13 TCGA-DK-A3X1-01 15 90127692 90127692 C G TICRR Missense_Mutation p.S370R 0.21 tolerated(0.44) benign(0.012) TCGA-DK-A3X1-01 15 91483662 91483662 C T UNC45A Silent p.L216L 0.21 TCGA-DK-A3X1-01 15 93595352 93595352 C T RGMA Silent p.R180R 0.24 TCGA-DK-A3X1-01 15 99672778 99672778 C T SYNM Nonsense_Mutation p.R1404* 0.21 TCGA-DK-A3X1-01 16 109026 109026 C T RHBDF1 Silent p.L698L 0.08 TCGA-DK-A3X1-01 16 10911962 10911962 G A TVP23A Silent p.I29I 0.20 TCGA-DK-A3X1-01 16 11145494 11145494 G A CLEC16A Missense_Mutation p.R664Q 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-DK-A3X1-01 16 113674 113674 C T RHBDF1 Missense_Mutation p.D125N 0.23 deleterious(0.01) probably_damaging(0.936) TCGA-DK-A3X1-01 16 1270525 1270525 C T CACNA1H Missense_Mutation p.A2198V 0.26 tolerated(0.33) benign(0.004) TCGA-DK-A3X1-01 16 138719 138719 C T NPRL3 Missense_Mutation p.E507K 0.30 deleterious(0.01) probably_damaging(0.918) TCGA-DK-A3X1-01 16 14958467 14958467 G C NOMO1 Missense_Mutation p.R474T 0.25 deleterious(0.04) benign(0.093) TCGA-DK-A3X1-01 16 1544331 1544331 C G TELO2 Missense_Mutation p.H17D 0.33 tolerated(0.23) benign(0.009) TCGA-DK-A3X1-01 16 16103752 16103752 C G ABCC1 Missense_Mutation p.I115M 0.19 tolerated(0.14) benign(0.444) TCGA-DK-A3X1-01 16 2012818 2012818 G A RPS2 Silent p.I156I 0.17 TCGA-DK-A3X1-01 16 2034732 2034732 C T GFER Intron 0.11 TCGA-DK-A3X1-01 16 2090035 2090035 C A NTHL1 Nonsense_Mutation p.E277* 0.28 TCGA-DK-A3X1-01 16 20976008 20976008 G C DNAH3 Missense_Mutation p.I3066M 0.17 deleterious(0) possibly_damaging(0.841) TCGA-DK-A3X1-01 16 20996973 20996973 C T DNAH3 Missense_Mutation p.G2364E 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A3X1-01 16 21115865 21115865 C A DNAH3 Nonsense_Mutation p.E765* 0.28 TCGA-DK-A3X1-01 16 2205103 2205103 G A TRAF7 5'Flank 0.09 TCGA-DK-A3X1-01 16 22291646 22291646 G A EEF2K Missense_Mutation p.E673K 0.16 deleterious(0.03) benign(0.139) TCGA-DK-A3X1-01 16 2237188 2237188 C A CASKIN1 Nonsense_Mutation p.E272* 0.19 TCGA-DK-A3X1-01 16 2286829 2286829 C T DNASE1L2 Silent p.P4P 0.29 TCGA-DK-A3X1-01 16 22926890 22926890 G A HS3ST2 3'UTR 0.38 TCGA-DK-A3X1-01 16 23119406 23119406 G C USP31 Silent p.L244L 0.28 TCGA-DK-A3X1-01 16 23581875 23581875 C G UBFD1 Missense_Mutation p.I298M 0.14 deleterious(0) probably_damaging(0.997) TCGA-DK-A3X1-01 16 24566966 24566966 G A RBBP6 Missense_Mutation p.E127K 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A3X1-01 16 25251684 25251684 C T ZKSCAN2 Missense_Mutation p.R786K 0.17 tolerated(0.08) benign(0.109) TCGA-DK-A3X1-01 16 27456503 27456503 A G IL21R Missense_Mutation p.K231E 0.24 tolerated(0.39) benign(0.013) TCGA-DK-A3X1-01 16 2808485 2808485 C G SRRM2 Missense_Mutation p.S177C 0.11 unknown(0) TCGA-DK-A3X1-01 16 28331409 28331409 G T SBK1 Nonsense_Mutation p.E148* 0.22 TCGA-DK-A3X1-01 16 28847774 28847774 C T ATXN2L Silent p.L1089L 0.15 TCGA-DK-A3X1-01 16 29852916 29852916 G A MVP Splice_Site p.X398_splice 0.23 TCGA-DK-A3X1-01 16 30078815 30078815 G A ALDOA Missense_Mutation p.E107K 0.16 deleterious(0.03) benign(0.252) TCGA-DK-A3X1-01 16 30581606 30581606 G C ZNF688 Silent p.P154P 0.21 TCGA-DK-A3X1-01 16 30581750 30581750 G T ZNF688 Silent p.V106V 0.19 TCGA-DK-A3X1-01 16 30732788 30732788 C T SRCAP Missense_Mutation p.R1178C 0.13 possibly_damaging(0.689) TCGA-DK-A3X1-01 16 30795476 30795476 G C ZNF629 Nonsense_Mutation p.S58* 0.22 TCGA-DK-A3X1-01 16 30953717 30953717 C G FBXL19 Missense_Mutation p.S516C 0.16 tolerated(0.06) probably_damaging(0.947) TCGA-DK-A3X1-01 16 31235662 31235662 C G TRIM72 Silent p.L340L 0.28 TCGA-DK-A3X1-01 16 4500496 4500496 C G DNAJA3 Missense_Mutation p.S446C 0.36 deleterious(0.02) benign(0.195) TCGA-DK-A3X1-01 16 48286111 48286111 G A LONP2 Silent p.L101L 0.11 TCGA-DK-A3X1-01 16 4933199 4933199 G T PPL 3'UTR 0.37 TCGA-DK-A3X1-01 16 4933533 4933533 G C PPL Nonsense_Mutation p.S1708* 0.25 TCGA-DK-A3X1-01 16 53288467 53288467 G A CHD9 Missense_Mutation p.D1327N 0.11 probably_damaging(0.991) TCGA-DK-A3X1-01 16 56717994 56717994 G C MT1X 3'UTR 0.16 TCGA-DK-A3X1-01 16 57608778 57608778 C T GPR114 Silent p.G420G 0.12 TCGA-DK-A3X1-01 16 57787356 57787356 G A KATNB1 Missense_Mutation p.D368N 0.33 deleterious(0) possibly_damaging(0.526) TCGA-DK-A3X1-01 16 58592477 58592477 G C CNOT1 Missense_Mutation p.F744L 0.16 tolerated(0.59) benign(0.001) TCGA-DK-A3X1-01 16 58608559 58608559 G T CNOT1 Missense_Mutation p.P645T 0.11 tolerated(0.27) benign(0.012) TCGA-DK-A3X1-01 16 58608568 58608568 G C CNOT1 Missense_Mutation p.Q642E 0.11 tolerated(0.12) possibly_damaging(0.48) TCGA-DK-A3X1-01 16 67190499 67190499 G A TRADD Missense_Mutation p.S22L 0.14 tolerated(0.36) benign(0.003) TCGA-DK-A3X1-01 16 67201421 67201421 G A HSF4 Missense_Mutation p.R258K 0.28 tolerated(0.79) benign(0.082) TCGA-DK-A3X1-01 16 67263966 67263966 C T FHOD1 Intron 0.30 TCGA-DK-A3X1-01 16 67265987 67265987 A C FHOD1 Silent p.A719A 0.07 TCGA-DK-A3X1-01 16 67327463 67327463 C T KCTD19 Silent p.Q734Q 0.24 TCGA-DK-A3X1-01 16 67671650 67671650 G T CTCF Nonsense_Mutation p.E687* 0.11 TCGA-DK-A3X1-01 16 69143703 69143703 C T HAS3 Silent p.I135I 0.32 TCGA-DK-A3X1-01 16 69143910 69143910 C G HAS3 Silent p.L204L 0.36 TCGA-DK-A3X1-01 16 69354143 69354143 G C VPS4A Missense_Mutation p.E240D 0.23 tolerated(0.06) benign(0.011) TCGA-DK-A3X1-01 16 70363869 70363869 C T DDX19B Silent p.I307I 0.15 TCGA-DK-A3X1-01 16 70843817 70843817 C T HYDIN Missense_Mutation p.E4918K 0.27 possibly_damaging(0.801) TCGA-DK-A3X1-01 16 70843871 70843871 C T HYDIN Missense_Mutation p.E4900K 0.29 possibly_damaging(0.801) TCGA-DK-A3X1-01 16 71748679 71748679 C A PHLPP2 Missense_Mutation p.R7I 0.34 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-DK-A3X1-01 16 72174473 72174473 C T PMFBP1 Silent p.E215E 0.16 TCGA-DK-A3X1-01 16 735939 735939 G C WDR24 Missense_Mutation p.D501E 0.12 tolerated(0.62) benign(0.003) TCGA-DK-A3X1-01 16 81819583 81819583 G C PLCG2 5'UTR 0.09 TCGA-DK-A3X1-01 16 84270993 84270993 C T KCNG4 Silent p.T33T 0.16 TCGA-DK-A3X1-01 16 85691040 85691040 C A GSE1 Silent p.R490R 0.12 TCGA-DK-A3X1-01 16 89346347 89346347 T C ANKRD11 Silent p.A2201A 0.17 TCGA-DK-A3X1-01 16 8948950 8948950 C A CARHSP1 3'UTR 0.18 TCGA-DK-A3X1-01 16 89789204 89789204 C T ZNF276 Silent p.V157V 0.14 TCGA-DK-A3X1-01 16 89922055 89922055 C T SPIRE2 Silent p.L313L 0.28 TCGA-DK-A3X1-01 16 90001759 90001759 G A TUBB3 Missense_Mutation p.M300I 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.8) TCGA-DK-A3X1-01 16 90142264 90142264 C T PRDM7 Missense_Mutation p.E19K 0.22 tolerated_low_confidence(0.23) benign(0.026) TCGA-DK-A3X1-01 17 1183494 1183494 G C TUSC5 Missense_Mutation p.E67Q 0.28 tolerated(0.46) probably_damaging(0.93) TCGA-DK-A3X1-01 17 1374391 1374391 G A MYO1C Missense_Mutation p.A729V 0.26 deleterious(0.01) probably_damaging(0.914) TCGA-DK-A3X1-01 17 16552976 16552976 C G ZNF624 Missense_Mutation p.R28P 0.11 tolerated_low_confidence(1) benign(0) TCGA-DK-A3X1-01 17 18025324 18025324 G C MYO15A Missense_Mutation p.Q1070H 0.22 unknown(0) TCGA-DK-A3X1-01 17 18668067 18668067 G T FBXW10 Silent p.L482L 0.25 TCGA-DK-A3X1-01 17 19015732 19015732 A T SNORD3D RNA 0.12 TCGA-DK-A3X1-01 17 20130924 20130924 G C SPECC1 Missense_Mutation p.E688Q 0.21 deleterious(0) possibly_damaging(0.864) TCGA-DK-A3X1-01 17 26818799 26818799 C T SLC13A2 Silent p.F318F 0.10 TCGA-DK-A3X1-01 17 26890912 26890912 G C PIGS Missense_Mutation p.I100M 0.13 deleterious(0.01) benign(0.232) TCGA-DK-A3X1-01 17 26951382 26951382 C T KIAA0100 Missense_Mutation p.E1541K 0.19 deleterious(0.01) possibly_damaging(0.833) TCGA-DK-A3X1-01 17 27051246 27051246 C T RPL23A 3'UTR 0.30 TCGA-DK-A3X1-01 17 27051338 27051338 C T RPL23A 3'UTR 0.23 TCGA-DK-A3X1-01 17 27051561 27051561 C A TLCD1 Missense_Mutation p.K237N 0.13 tolerated(0.5) benign(0.021) TCGA-DK-A3X1-01 17 27052547 27052547 C G TLCD1 Missense_Mutation p.E77Q 0.16 tolerated(0.43) benign(0.179) TCGA-DK-A3X1-01 17 27382234 27382234 T C PIPOX Missense_Mutation p.Y321H 0.18 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X1-01 17 27943318 27943318 G A CORO6 Silent p.I347I 0.15 TCGA-DK-A3X1-01 17 32685093 32685093 G C CCL13 Missense_Mutation p.K80N 0.38 deleterious(0.03) possibly_damaging(0.668) TCGA-DK-A3X1-01 17 32964869 32964869 G T TMEM132E Missense_Mutation p.G858V 0.54 tolerated(0.4) possibly_damaging(0.65) TCGA-DK-A3X1-01 17 33501356 33501356 C G UNC45B Missense_Mutation p.I644M 0.12 tolerated_low_confidence(0.08) benign(0.04) TCGA-DK-A3X1-01 17 33953812 33953812 G A AP2B1 Missense_Mutation p.E297K 0.14 deleterious(0) probably_damaging(0.996) TCGA-DK-A3X1-01 17 34308454 34308454 C T CCL16 Translation_Start_Site p.M1? 0.17 tolerated(0.07) possibly_damaging(0.827) TCGA-DK-A3X1-01 17 34923593 34923593 G C GGNBP2 Missense_Mutation p.E207Q 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-DK-A3X1-01 17 35298106 35298106 C T LHX1 Silent p.F199F 0.31 TCGA-DK-A3X1-01 17 35634815 35634815 C T ACACA Missense_Mutation p.D232N 0.14 deleterious(0.01) possibly_damaging(0.62) TCGA-DK-A3X1-01 17 35804846 35804846 G A TADA2A Missense_Mutation p.E194K 0.14 tolerated(0.23) benign(0.031) TCGA-DK-A3X1-01 17 36483085 36483085 G A GPR179 Missense_Mutation p.P2123S 0.16 tolerated(0.15) benign(0.06) TCGA-DK-A3X1-01 17 37347815 37347815 G C CACNB1 Nonsense_Mutation p.S68* 0.36 TCGA-DK-A3X1-01 17 40117264 40117264 A G CNP 5'Flank 0.23 TCGA-DK-A3X1-01 17 40705796 40705796 C T HSD17B1 Intron 0.30 TCGA-DK-A3X1-01 17 40818472 40818472 C G TUBG2 Silent p.L376L 0.10 TCGA-DK-A3X1-01 17 41341649 41341649 G A NBR1 Silent p.Q175Q 0.14 TCGA-DK-A3X1-01 17 42239247 42239247 G C C17orf53 Missense_Mutation p.D631H 0.16 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 17 42992744 42992744 G C GFAP Silent p.L37L 0.32 TCGA-DK-A3X1-01 17 43345029 43345029 C T MAP3K14-AS1 RNA 0.08 TCGA-DK-A3X1-01 17 43348526 43348526 C T MAP3K14-AS1 3'Flank 0.14 TCGA-DK-A3X1-01 17 4535233 4535233 G C ALOX15 Missense_Mutation p.S587C 0.14 tolerated(1) benign(0.322) TCGA-DK-A3X1-01 17 46030598 46030598 C T PRR15L Translation_Start_Site p.M1? 0.43 tolerated_low_confidence(0.29) benign(0) TCGA-DK-A3X1-01 17 46973041 46973041 C G ATP5G1 Silent p.L107L 0.46 TCGA-DK-A3X1-01 17 47583714 47583714 G C NGFR Missense_Mutation p.E88Q 0.13 tolerated(0.74) benign(0.073) TCGA-DK-A3X1-01 17 48540834 48540834 C G ACSF2 Missense_Mutation p.L323V 0.42 tolerated(1) benign(0.006) TCGA-DK-A3X1-01 17 48601143 48601143 G A MYCBPAP Missense_Mutation p.E588K 0.18 tolerated(0.16) benign(0.027) TCGA-DK-A3X1-01 17 48619216 48619216 C T EPN3 Missense_Mutation p.P533S 0.18 tolerated(0.18) probably_damaging(0.965) TCGA-DK-A3X1-01 17 48750880 48750880 C T ABCC3 Silent p.F820F 0.09 TCGA-DK-A3X1-01 17 49281254 49281254 C G MBTD1 Missense_Mutation p.E213Q 0.41 tolerated(0.11) possibly_damaging(0.636) TCGA-DK-A3X1-01 17 5289552 5289552 C T NUP88 Missense_Mutation p.D734N 0.14 tolerated(0.19) benign(0.042) TCGA-DK-A3X1-01 17 53218719 53218719 A G STXBP4 Missense_Mutation p.Y513C 0.13 deleterious(0) probably_damaging(0.995) TCGA-DK-A3X1-01 17 5347829 5347829 G C DHX33 Nonsense_Mutation p.S607* 0.26 TCGA-DK-A3X1-01 17 56270423 56270423 C T EPX Missense_Mutation p.S34L 0.30 tolerated(0.08) benign(0.013) TCGA-DK-A3X1-01 17 57189697 57189697 G T SKA2 Missense_Mutation p.L103M 0.35 deleterious(0.03) benign(0.2) TCGA-DK-A3X1-01 17 58288742 58288742 G C USP32 Silent p.L771L 0.06 TCGA-DK-A3X1-01 17 59878667 59878667 C T BRIP1 Missense_Mutation p.D363N 0.10 tolerated(0.07) possibly_damaging(0.662) TCGA-DK-A3X1-01 17 61787958 61787958 G A STRADA Silent p.L158L 0.18 TCGA-DK-A3X1-01 17 61869914 61869914 G C DDX42 Missense_Mutation p.E122Q 0.10 tolerated(0.21) benign(0.034) TCGA-DK-A3X1-01 17 66352862 66352862 C A ARSG Silent p.L207L 0.40 TCGA-DK-A3X1-01 17 67024685 67024685 G C ABCA9 Missense_Mutation p.P536A 0.23 deleterious(0.03) possibly_damaging(0.802) TCGA-DK-A3X1-01 17 68171223 68171223 G T KCNJ2 Nonsense_Mutation p.E15* 0.19 TCGA-DK-A3X1-01 17 72739323 72739323 G A RAB37 Missense_Mutation p.R106K 0.37 deleterious(0) probably_damaging(0.956) TCGA-DK-A3X1-01 17 73164440 73164440 G C SUMO2 Silent p.V94V 0.19 TCGA-DK-A3X1-01 17 73204648 73204648 G C NUP85 Missense_Mutation p.K20N 0.11 tolerated(0.11) benign(0.002) TCGA-DK-A3X1-01 17 73269496 73269496 G A SLC25A19 3'UTR 0.31 TCGA-DK-A3X1-01 17 73282415 73282415 C A SLC25A19 Missense_Mutation p.Q86H 0.13 deleterious(0) probably_damaging(0.95) TCGA-DK-A3X1-01 17 7365511 7365511 G T ZBTB4 Silent p.L930L 0.19 TCGA-DK-A3X1-01 17 73851400 73851400 G A WBP2 5'UTR 0.15 TCGA-DK-A3X1-01 17 73942805 73942805 G T ACOX1 3'UTR 0.14 TCGA-DK-A3X1-01 17 7460637 7460637 C A TNFSF12 Intron 0.23 TCGA-DK-A3X1-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.48 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 17 78059852 78059852 G A CCDC40 Silent p.L762L 0.17 TCGA-DK-A3X1-01 17 79220394 79220394 C T SLC38A10 Silent p.E774E 0.16 TCGA-DK-A3X1-01 17 80040026 80040026 C T FASN Missense_Mutation p.E2008K 0.18 tolerated(0.89) benign(0.01) TCGA-DK-A3X1-01 17 80332454 80332454 C A UTS2R Missense_Mutation p.S85Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-DK-A3X1-01 17 80377757 80377757 G A HEXDC Missense_Mutation p.E28K 0.36 tolerated(0.22) benign(0.028) TCGA-DK-A3X1-01 17 80391557 80391557 C T HEXDC Silent p.F102F 0.22 TCGA-DK-A3X1-01 18 10526071 10526071 C G NAPG 5'UTR 0.50 TCGA-DK-A3X1-01 18 13092445 13092445 C T CEP192 Missense_Mutation p.S2058L 0.15 deleterious(0) possibly_damaging(0.897) TCGA-DK-A3X1-01 18 14479338 14479338 C T CXADRP3 RNA 0.42 TCGA-DK-A3X1-01 18 40857354 40857354 G A SYT4 5'UTR 0.60 TCGA-DK-A3X1-01 18 50832018 50832018 G A DCC Missense_Mutation p.R661Q 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-DK-A3X1-01 18 55342102 55342102 C G ATP8B1 Missense_Mutation p.D595H 0.39 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 18 59854733 59854733 G C KIAA1468 5'UTR 0.28 TCGA-DK-A3X1-01 18 61264380 61264380 C T SERPINB13 Missense_Mutation p.S320L 0.14 deleterious(0) possibly_damaging(0.544) TCGA-DK-A3X1-01 18 64235752 64235752 C G CDH19 Missense_Mutation p.E131Q 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A3X1-01 18 7010382 7010382 G C LAMA1 Silent p.L1230L 0.27 TCGA-DK-A3X1-01 18 70417770 70417770 G C NETO1 Silent p.L356L 0.18 TCGA-DK-A3X1-01 18 70451007 70451007 G A NETO1 Silent p.V258V 0.73 TCGA-DK-A3X1-01 18 7080413 7080413 G A LAMA1 Silent p.I35I 0.25 TCGA-DK-A3X1-01 18 71924075 71924075 C T CYB5A Intron 0.61 TCGA-DK-A3X1-01 18 74091004 74091004 G A ZNF516 Silent p.G1022G 0.23 TCGA-DK-A3X1-01 19 10169529 10169529 G C C3P1 RNA 0.17 TCGA-DK-A3X1-01 19 10385665 10385665 G C ICAM1 Missense_Mutation p.D98H 0.18 tolerated(0.11) benign(0.01) TCGA-DK-A3X1-01 19 11040315 11040315 G T C19orf52 Missense_Mutation p.E240D 0.44 tolerated_low_confidence(0.12) benign(0.352) TCGA-DK-A3X1-01 19 11040364 11040364 G C C19orf52 Missense_Mutation p.E257Q 0.21 tolerated_low_confidence(0.05) benign(0.007) TCGA-DK-A3X1-01 19 11943309 11943309 C T ZNF440 Nonsense_Mutation p.Q440* 0.13 TCGA-DK-A3X1-01 19 14232376 14232376 C T ASF1B Missense_Mutation p.E124K 0.14 deleterious(0.02) benign(0.222) TCGA-DK-A3X1-01 19 14232407 14232407 G C ASF1B Silent p.V113V 0.16 TCGA-DK-A3X1-01 19 14232458 14232458 G A ASF1B Silent p.L96L 0.18 TCGA-DK-A3X1-01 19 1466922 1466922 C G APC2 Missense_Mutation p.P1208A 0.33 probably_damaging(0.999) TCGA-DK-A3X1-01 19 14675758 14675758 C T TECR Intron 0.15 TCGA-DK-A3X1-01 19 14876511 14876511 C A EMR2 Missense_Mutation p.R247I 0.12 tolerated(0.25) benign(0) TCGA-DK-A3X1-01 19 15053121 15053121 C T OR7C2 Missense_Mutation p.S274L 0.22 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DK-A3X1-01 19 15342142 15342142 C T EPHX3 Missense_Mutation p.R132Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 19 16495955 16495955 G A EPS15L1 Silent p.F744F 0.46 TCGA-DK-A3X1-01 19 16528407 16528407 C T EPS15L1 Silent p.V383V 0.13 TCGA-DK-A3X1-01 19 16653184 16653184 C G CHERP Missense_Mutation p.E2D 0.19 tolerated(1) possibly_damaging(0.636) TCGA-DK-A3X1-01 19 17531000 17531000 C T MVB12A Missense_Mutation p.S19L 0.27 deleterious(0.03) benign(0.006) TCGA-DK-A3X1-01 19 17895552 17895552 C G FCHO1 Missense_Mutation p.Q749E 0.25 tolerated(0.98) benign(0.002) TCGA-DK-A3X1-01 19 20748583 20748583 G T ZNF737 5'Flank 0.10 TCGA-DK-A3X1-01 19 2226780 2226780 C G DOT1L Silent p.L1420L 0.25 TCGA-DK-A3X1-01 19 23928075 23928075 C G ZNF681 Missense_Mutation p.D93H 0.09 deleterious(0.01) probably_damaging(0.953) TCGA-DK-A3X1-01 19 2794783 2794783 T C THOP1 Missense_Mutation p.F84S 0.34 tolerated(0.06) probably_damaging(1) TCGA-DK-A3X1-01 19 31039181 31039181 G A ZNF536 Silent p.L885L 0.18 TCGA-DK-A3X1-01 19 31768677 31768677 C T TSHZ3 Silent p.P674P 0.15 TCGA-DK-A3X1-01 19 3284910 3284910 G C CELF5 Silent p.P350P 0.29 TCGA-DK-A3X1-01 19 34912527 34912527 C T PDCD2L Nonsense_Mutation p.Q301* 0.27 TCGA-DK-A3X1-01 19 34912556 34912556 C T PDCD2L Silent p.L310L 0.26 TCGA-DK-A3X1-01 19 36024442 36024442 G A GAPDHS Missense_Mutation p.D5N 0.24 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-DK-A3X1-01 19 36236308 36236308 C T PSENEN 5'UTR 0.32 TCGA-DK-A3X1-01 19 36259435 36259435 C T C19orf55 3'UTR 0.22 TCGA-DK-A3X1-01 19 36365501 36365501 C T APLP1 Silent p.I384I 0.18 TCGA-DK-A3X1-01 19 38160085 38160085 G A ZNF781 Missense_Mutation p.S322L 0.34 tolerated_low_confidence(1) benign(0) TCGA-DK-A3X1-01 19 3816809 3816809 C T ZFR2 Missense_Mutation p.V656I 0.38 deleterious(0) probably_damaging(0.987) TCGA-DK-A3X1-01 19 38187894 38187894 C G ZNF607 3'UTR 0.45 TCGA-DK-A3X1-01 19 38713255 38713255 G A DPF1 Silent p.L68L 0.33 TCGA-DK-A3X1-01 19 3979971 3979971 C A EEF2 Silent p.V480V 0.19 TCGA-DK-A3X1-01 19 39963713 39963713 C A SUPT5H Silent p.T739T 0.14 TCGA-DK-A3X1-01 19 39963872 39963872 C A SUPT5H Nonsense_Mutation p.S763* 0.15 TCGA-DK-A3X1-01 19 40009746 40009746 G A SELV Silent p.Q333Q 0.14 TCGA-DK-A3X1-01 19 40872415 40872415 G T PLD3 Nonsense_Mutation p.E9* 0.26 TCGA-DK-A3X1-01 19 40903894 40903894 G C PRX Intron 0.33 TCGA-DK-A3X1-01 19 41594955 41594955 G A CYP2A13 Missense_Mutation p.R101Q 0.18 deleterious(0.01) probably_damaging(1) TCGA-DK-A3X1-01 19 41633861 41633861 C A CYP2F1 Silent p.L450L 0.14 TCGA-DK-A3X1-01 19 42399472 42399472 C T ARHGEF1 Missense_Mutation p.R325W 0.33 deleterious(0) probably_damaging(0.993) TCGA-DK-A3X1-01 19 42410099 42410099 G A ARHGEF1 Missense_Mutation p.E820K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A3X1-01 19 43026086 43026086 C T CEACAM1 Silent p.L231L 0.12 TCGA-DK-A3X1-01 19 43969801 43969801 G A LYPD3 5'UTR 0.22 TCGA-DK-A3X1-01 19 44244303 44244303 C G SMG9 Missense_Mutation p.D257H 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A3X1-01 19 44636229 44636229 G C ZNF225 Missense_Mutation p.E488Q 0.24 tolerated(0.16) benign(0.062) TCGA-DK-A3X1-01 19 46142296 46142296 G A EML2 Intron 0.35 TCGA-DK-A3X1-01 19 46996847 46996847 G A PNMAL2 Missense_Mutation p.R626W 0.27 tolerated_low_confidence(0.12) unknown(0) TCGA-DK-A3X1-01 19 47423577 47423577 C G ARHGAP35 Missense_Mutation p.H549D 0.40 tolerated(0.25) probably_damaging(0.989) TCGA-DK-A3X1-01 19 47978648 47978648 C A KPTN 3'UTR 0.23 TCGA-DK-A3X1-01 19 47991562 47991562 C T NAPA Missense_Mutation p.E291K 0.20 deleterious(0.03) benign(0.255) TCGA-DK-A3X1-01 19 49132306 49132306 C A SPHK2 Nonsense_Mutation p.S414* 0.43 TCGA-DK-A3X1-01 19 49183853 49183853 C T RN7SL345P 5'Flank 0.26 TCGA-DK-A3X1-01 19 49514296 49514296 C T RUVBL2 Silent p.I276I 0.21 TCGA-DK-A3X1-01 19 49535336 49535336 C T CGB2 5'UTR 0.14 TCGA-DK-A3X1-01 19 49842010 49842010 G A CD37 Silent p.L167L 0.14 TCGA-DK-A3X1-01 19 50017149 50017149 C T FCGRT Silent p.L28L 0.24 TCGA-DK-A3X1-01 19 50310110 50310110 G C AP2A1 3'UTR 0.46 TCGA-DK-A3X1-01 19 51169834 51169834 C G SHANK1 Missense_Mutation p.D1795H 0.17 unknown(0) TCGA-DK-A3X1-01 19 52375790 52375790 C A ZNF577 Nonsense_Mutation p.E485* 0.22 TCGA-DK-A3X1-01 19 52719907 52719907 G A PPP2R1A Silent p.L373L 0.36 TCGA-DK-A3X1-01 19 53013953 53013953 G A ZNF578 Missense_Mutation p.E107K 0.27 tolerated(0.2) benign(0.013) TCGA-DK-A3X1-01 19 53452906 53452906 G A ZNF816 3'UTR 0.14 TCGA-DK-A3X1-01 19 53995335 53995335 A G ZNF813 Missense_Mutation p.N617D 0.18 deleterious(0) benign(0.281) TCGA-DK-A3X1-01 19 54600327 54600327 G A OSCAR Silent p.F69F 0.28 TCGA-DK-A3X1-01 19 54627903 54627903 C G PRPF31 Silent p.L241L 0.10 TCGA-DK-A3X1-01 19 55107894 55107894 C T LILRA1 Missense_Mutation p.S400L 0.37 deleterious(0) probably_damaging(0.997) TCGA-DK-A3X1-01 19 55107923 55107923 C T LILRA1 Missense_Mutation p.H410Y 0.35 tolerated(0.73) benign(0.083) TCGA-DK-A3X1-01 19 55493683 55493683 C T NLRP2 Missense_Mutation p.S206L 0.19 deleterious(0) benign(0.4) TCGA-DK-A3X1-01 19 55502018 55502018 G A NLRP2 Missense_Mutation p.E896K 0.17 tolerated(0.16) benign(0.055) TCGA-DK-A3X1-01 19 56321174 56321174 C T NLRP11 Missense_Mutation p.A268T 0.17 tolerated(0.17) probably_damaging(0.958) TCGA-DK-A3X1-01 19 58639517 58639517 C T ZNF329 Missense_Mutation p.E452K 0.12 deleterious(0) possibly_damaging(0.878) TCGA-DK-A3X1-01 19 58948469 58948469 C G ZNF132 Missense_Mutation p.Q59H 0.16 deleterious(0) probably_damaging(0.963) TCGA-DK-A3X1-01 19 6230705 6230705 C T MLLT1 Missense_Mutation p.C99Y 0.19 tolerated(0.11) possibly_damaging(0.841) TCGA-DK-A3X1-01 19 630072 630072 C G POLRMT Missense_Mutation p.G97A 0.28 tolerated(0.33) benign(0.016) TCGA-DK-A3X1-01 19 7083276 7083276 G T ZNF557 Nonsense_Mutation p.E272* 0.19 TCGA-DK-A3X1-01 19 7794775 7794775 C G CLEC4G Silent p.L225L 0.13 TCGA-DK-A3X1-01 19 7968896 7968896 G A MAP2K7 Missense_Mutation p.E23K 0.46 tolerated(0.14) benign(0.121) TCGA-DK-A3X1-01 1 100533744 100533744 C G HIAT1 Missense_Mutation p.P233R 0.15 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 1 103540254 103540254 C T COL11A1 Missense_Mutation p.D191N 0.35 possibly_damaging(0.632) TCGA-DK-A3X1-01 1 10464215 10464215 C T PGD Intron 0.27 TCGA-DK-A3X1-01 1 109103119 109103119 C T FAM102B Silent p.F23F 0.19 TCGA-DK-A3X1-01 1 109617651 109617651 C A TAF13 Nonsense_Mutation p.E22* 0.14 TCGA-DK-A3X1-01 1 11008292 11008292 T C C1orf127 Missense_Mutation p.R634G 0.20 tolerated(0.35) benign(0.007) TCGA-DK-A3X1-01 1 11082329 11082329 G A TARDBP Missense_Mutation p.G288E 0.15 tolerated(0.23) benign(0.015) TCGA-DK-A3X1-01 1 11082344 11082344 G C TARDBP Missense_Mutation p.R293T 0.13 tolerated(0.41) benign(0.079) TCGA-DK-A3X1-01 1 1138988 1138988 C T TNFRSF18 Missense_Mutation p.D251N 0.21 tolerated_low_confidence(0.21) benign(0.001) TCGA-DK-A3X1-01 1 114226264 114226264 C G MAGI3 Missense_Mutation p.I1358M 0.15 tolerated_low_confidence(0.21) benign(0.013) TCGA-DK-A3X1-01 1 114454730 114454730 C T DCLRE1B Silent p.L506L 0.16 TCGA-DK-A3X1-01 1 116260464 116260464 G A CASQ2 Missense_Mutation p.P279S 0.13 deleterious(0.02) possibly_damaging(0.902) TCGA-DK-A3X1-01 1 117564240 117564240 C A CD101 Missense_Mutation p.S688Y 0.11 deleterious(0.03) benign(0.192) TCGA-DK-A3X1-01 1 1178212 1178212 C T FAM132A Intron 0.17 TCGA-DK-A3X1-01 1 11900229 11900229 C T CLCN6 Silent p.L853L 0.30 TCGA-DK-A3X1-01 1 12446370 12446370 G A VPS13D Missense_Mutation p.E3871K 0.34 probably_damaging(0.981) TCGA-DK-A3X1-01 1 12836179 12836179 C T PRAMEF12 Nonsense_Mutation p.Q261* 0.29 TCGA-DK-A3X1-01 1 12885303 12885303 C T PRAMEF11 Missense_Mutation p.D270N 0.27 deleterious(0) probably_damaging(0.992) TCGA-DK-A3X1-01 1 14113107 14113107 G A PRDM2 Intron 0.27 TCGA-DK-A3X1-01 1 144882612 144882612 G A PDE4DIP Missense_Mutation p.P1136L 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 1 149871751 149871751 G T BOLA1 Nonsense_Mutation p.E47* 0.11 TCGA-DK-A3X1-01 1 150259019 150259019 C T C1orf51 Missense_Mutation p.L271F 0.10 tolerated(0.06) benign(0.139) TCGA-DK-A3X1-01 1 150259021 150259021 C T C1orf51 Silent p.L271L 0.08 TCGA-DK-A3X1-01 1 150463082 150463082 C G TARS2 Missense_Mutation p.F131L 0.15 deleterious(0.03) benign(0.053) TCGA-DK-A3X1-01 1 150676602 150676602 G C HORMAD1 Missense_Mutation p.H314D 0.54 tolerated(0.24) benign(0.003) TCGA-DK-A3X1-01 1 150936790 150936790 G C SETDB1 Missense_Mutation p.E1276Q 0.14 tolerated(0.36) probably_damaging(0.958) TCGA-DK-A3X1-01 1 151214948 151214948 G C PIP5K1A Missense_Mutation p.Q515H 0.22 tolerated(0.12) benign(0.009) TCGA-DK-A3X1-01 1 151259814 151259814 C T ZNF687 Silent p.V349V 0.39 TCGA-DK-A3X1-01 1 151773919 151773919 C T LINGO4 Missense_Mutation p.R421Q 0.10 tolerated(1) probably_damaging(0.988) TCGA-DK-A3X1-01 1 152083292 152083292 C A TCHH Nonsense_Mutation p.E801* 0.13 TCGA-DK-A3X1-01 1 152279889 152279889 A C FLG Missense_Mutation p.H2491Q 0.23 probably_damaging(0.972) TCGA-DK-A3X1-01 1 153579937 153579937 G A S100A16 3'UTR 0.23 TCGA-DK-A3X1-01 1 154076593 154076593 G A NUP210L Missense_Mutation p.H572Y 0.13 tolerated(0.48) benign(0.003) TCGA-DK-A3X1-01 1 154573729 154573729 C T ADAR Silent p.L463L 0.11 TCGA-DK-A3X1-01 1 155149435 155149435 G A TRIM46 Missense_Mutation p.E233K 0.34 tolerated(1) possibly_damaging(0.908) TCGA-DK-A3X1-01 1 155294436 155294436 G A RUSC1 Intron 0.18 TCGA-DK-A3X1-01 1 155294700 155294700 G A RUSC1 Silent p.Q474Q 0.21 TCGA-DK-A3X1-01 1 155531876 155531876 G C ASH1L Intron 0.33 TCGA-DK-A3X1-01 1 155884115 155884115 G C KIAA0907 Intron 0.18 TCGA-DK-A3X1-01 1 157738293 157738293 A G FCRL2 Missense_Mutation p.V265A 0.18 tolerated(0.1) possibly_damaging(0.693) TCGA-DK-A3X1-01 1 158299235 158299235 C A CD1B Missense_Mutation p.D271Y 0.05 deleterious(0) benign(0.23) TCGA-DK-A3X1-01 1 158607885 158607885 C G SPTA1 Missense_Mutation p.L1709F 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 1 158746673 158746673 G A OR6N2 Silent p.F251F 0.07 TCGA-DK-A3X1-01 1 159272151 159272151 G A FCER1A 5'UTR 0.13 TCGA-DK-A3X1-01 1 160054012 160054012 C T KCNJ9 Silent p.F64F 0.13 TCGA-DK-A3X1-01 1 160523639 160523639 G A CD84 Intron 0.07 TCGA-DK-A3X1-01 1 161138284 161138284 C T PPOX Silent p.L178L 0.07 TCGA-DK-A3X1-01 1 161139803 161139803 C G PPOX Missense_Mutation p.L326V 0.14 tolerated(0.07) benign(0.437) TCGA-DK-A3X1-01 1 161140823 161140823 G C PPOX Splice_Site p.X431_splice 0.09 TCGA-DK-A3X1-01 1 161141591 161141591 G A B4GALT3 3'UTR 0.08 TCGA-DK-A3X1-01 1 161188739 161188739 G T FCER1G 3'UTR 0.07 TCGA-DK-A3X1-01 1 161298268 161298268 C A SDHC Missense_Mutation p.P54T 0.60 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 1 161488714 161488714 C G FCGR2A 3'UTR 0.07 TCGA-DK-A3X1-01 1 16459790 16459790 C G EPHA2 Missense_Mutation p.K646N 0.10 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 1 16641900 16641900 G A FBXO42 Missense_Mutation p.S5L 0.12 deleterious_low_confidence(0) benign(0.041) TCGA-DK-A3X1-01 1 167815465 167815465 G A ADCY10 Missense_Mutation p.S825F 0.10 deleterious(0.01) benign(0.027) TCGA-DK-A3X1-01 1 173454569 173454569 C T PRDX6 Missense_Mutation p.R108W 0.26 deleterious(0.03) possibly_damaging(0.525) TCGA-DK-A3X1-01 1 173486775 173486775 C A SLC9C2 Missense_Mutation p.M936I 0.11 tolerated(0.64) benign(0.002) TCGA-DK-A3X1-01 1 179989239 179989239 C G CEP350 Missense_Mutation p.S777C 0.10 probably_damaging(0.95) TCGA-DK-A3X1-01 1 179989832 179989832 C G CEP350 Missense_Mutation p.L975V 0.13 benign(0.002) TCGA-DK-A3X1-01 1 182572430 182572430 G A RGS16 Missense_Mutation p.S30L 0.41 deleterious(0) benign(0.05) TCGA-DK-A3X1-01 1 183086694 183086694 G C LAMC1 Missense_Mutation p.L571F 0.14 tolerated(0.2) benign(0.048) TCGA-DK-A3X1-01 1 186151338 186151338 G A HMCN1 Missense_Mutation p.E5445K 0.32 probably_damaging(0.952) TCGA-DK-A3X1-01 1 18808297 18808297 C T KLHDC7A Silent p.F274F 0.13 TCGA-DK-A3X1-01 1 196797300 196797300 G A CFHR1 Silent p.R177R 0.35 TCGA-DK-A3X1-01 1 196883726 196883726 G T CFHR4 Nonsense_Mutation p.E427* 0.20 TCGA-DK-A3X1-01 1 200587334 200587334 G C KIF14 Missense_Mutation p.S173C 0.32 deleterious(0.05) benign(0.004) TCGA-DK-A3X1-01 1 200587382 200587382 G C KIF14 Missense_Mutation p.S157C 0.27 deleterious(0) possibly_damaging(0.76) TCGA-DK-A3X1-01 1 200819297 200819297 G A CAMSAP2 Missense_Mutation p.D1134N 0.18 tolerated(0.14) benign(0.028) TCGA-DK-A3X1-01 1 200954093 200954093 C T KIF21B Missense_Mutation p.D1233N 0.16 tolerated(0.09) probably_damaging(0.989) TCGA-DK-A3X1-01 1 201030512 201030512 G A CACNA1S Silent p.I1046I 0.17 TCGA-DK-A3X1-01 1 201035414 201035414 C T CACNA1S Silent p.L896L 0.15 TCGA-DK-A3X1-01 1 202272426 202272426 G T LGR6 Missense_Mutation p.D317Y 0.21 deleterious(0.03) possibly_damaging(0.691) TCGA-DK-A3X1-01 1 202273726 202273726 G C LGR6 Silent p.G346G 0.12 TCGA-DK-A3X1-01 1 202278242 202278242 G A LGR6 Silent p.L448L 0.09 TCGA-DK-A3X1-01 1 202283965 202283965 G T LGR6 Nonsense_Mutation p.E535* 0.18 TCGA-DK-A3X1-01 1 202828155 202828155 C T RP11-480I12.7 5'Flank 0.42 TCGA-DK-A3X1-01 1 203276579 203276579 C T BTG2 3'UTR 0.21 TCGA-DK-A3X1-01 1 205492313 205492313 G T CDK18 Missense_Mutation p.M6I 0.13 deleterious_low_confidence(0) benign(0.364) TCGA-DK-A3X1-01 1 207076423 207076423 C G IL24 3'UTR 0.31 TCGA-DK-A3X1-01 1 207940986 207940986 G C CD46 Missense_Mutation p.L297F 0.17 tolerated(0.45) benign(0.124) TCGA-DK-A3X1-01 1 209788623 209788623 C T LAMB3 Missense_Mutation p.C1171Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 1 21048338 21048338 G A SH2D5 Missense_Mutation p.L407F 0.19 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-DK-A3X1-01 1 212965324 212965324 G C TATDN3 Missense_Mutation p.D21H 0.24 deleterious(0.02) benign(0.008) TCGA-DK-A3X1-01 1 214813365 214813365 G C CENPF Missense_Mutation p.D562H 0.21 possibly_damaging(0.486) TCGA-DK-A3X1-01 1 214826227 214826227 C A CENPF Silent p.L2739L 0.19 TCGA-DK-A3X1-01 1 22157765 22157765 G A HSPG2 Silent p.L3835L 0.12 TCGA-DK-A3X1-01 1 22333440 22333440 C A CELA3A Silent p.L144L 0.12 TCGA-DK-A3X1-01 1 223983917 223983917 G T TP53BP2 Nonsense_Mutation p.S775* 0.16 TCGA-DK-A3X1-01 1 223983926 223983926 G C TP53BP2 Missense_Mutation p.S772C 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-DK-A3X1-01 1 228491539 228491539 G T OBSCN Silent p.T4634T 0.10 TCGA-DK-A3X1-01 1 228495976 228495976 G T OBSCN Missense_Mutation p.D5168Y 0.45 probably_damaging(0.958) TCGA-DK-A3X1-01 1 228582374 228582374 G A TRIM11 3'UTR 0.17 TCGA-DK-A3X1-01 1 231472148 231472148 G A EXOC8 Silent p.I448I 0.19 TCGA-DK-A3X1-01 1 231473029 231473029 C T EXOC8 Missense_Mutation p.E155K 0.33 deleterious(0.01) benign(0.198) TCGA-DK-A3X1-01 1 23415321 23415321 C T LUZP1 3'UTR 0.19 TCGA-DK-A3X1-01 1 23418777 23418777 C T LUZP1 Missense_Mutation p.D660N 0.33 tolerated_low_confidence(0.05) possibly_damaging(0.888) TCGA-DK-A3X1-01 1 234509422 234509422 G C COA6 5'Flank 0.18 TCGA-DK-A3X1-01 1 236744562 236744562 C T HEATR1 Silent p.K905K 0.18 TCGA-DK-A3X1-01 1 237872849 237872849 C T RYR2 Silent p.I3404I 0.21 TCGA-DK-A3X1-01 1 24201129 24201129 C A CNR2 Nonsense_Mutation p.E327* 0.11 TCGA-DK-A3X1-01 1 249144405 249144405 G C ZNF692 3'UTR 0.12 TCGA-DK-A3X1-01 1 25717274 25717274 G A RHCE Missense_Mutation p.S256L 0.12 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X1-01 1 25944772 25944772 G A MAN1C1 Missense_Mutation p.D162N 0.24 tolerated(0.45) benign(0.001) TCGA-DK-A3X1-01 1 26507029 26507029 C T CNKSR1 Silent p.L46L 0.29 TCGA-DK-A3X1-01 1 26650797 26650797 C A AIM1L Missense_Mutation p.R654L 0.13 tolerated(0.07) benign(0.23) TCGA-DK-A3X1-01 1 27609826 27609826 C T WDTC1 Intron 0.15 TCGA-DK-A3X1-01 1 27681812 27681812 G A MAP3K6 3'UTR 0.32 TCGA-DK-A3X1-01 1 28477356 28477356 G A PTAFR Silent p.L59L 0.08 TCGA-DK-A3X1-01 1 29528545 29528545 C A MECR Missense_Mutation p.Q222H 0.26 tolerated(0.09) benign(0.005) TCGA-DK-A3X1-01 1 32660659 32660659 G A TXLNA Missense_Mutation p.E502K 0.47 tolerated(0.33) benign(0.031) TCGA-DK-A3X1-01 1 33245727 33245727 C A YARS Missense_Mutation p.M431I 0.13 tolerated(0.11) benign(0.056) TCGA-DK-A3X1-01 1 33246780 33246780 C G YARS Intron 0.21 TCGA-DK-A3X1-01 1 3394482 3394482 G C ARHGEF16 Missense_Mutation p.G506A 0.34 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 1 34034982 34034982 C G CSMD2 Missense_Mutation p.R2710P 0.19 deleterious(0.03) probably_damaging(0.939) TCGA-DK-A3X1-01 1 35579630 35579630 C G ZMYM1 Missense_Mutation p.F733L 0.20 tolerated(0.19) benign(0.098) TCGA-DK-A3X1-01 1 36550615 36550615 G C TEKT2 Missense_Mutation p.Q31H 0.11 deleterious(0) probably_damaging(0.98) TCGA-DK-A3X1-01 1 36766618 36766618 C G THRAP3 Nonsense_Mutation p.S812* 0.09 TCGA-DK-A3X1-01 1 36933439 36933439 C T CSF3R Silent p.L616L 0.19 TCGA-DK-A3X1-01 1 37979164 37979164 G A MEAF6 Intron 0.18 TCGA-DK-A3X1-01 1 38040350 38040350 G T GNL2 Silent p.I406I 0.18 TCGA-DK-A3X1-01 1 38040358 38040358 C A GNL2 Nonsense_Mutation p.E404* 0.16 TCGA-DK-A3X1-01 1 39384788 39384788 C T RHBDL2 Missense_Mutation p.D33N 0.19 tolerated(0.28) benign(0.002) TCGA-DK-A3X1-01 1 39876688 39876688 G A KIAA0754 Missense_Mutation p.E115K 0.23 possibly_damaging(0.486) TCGA-DK-A3X1-01 1 40149690 40149690 C T HPCAL4 Silent p.Q99Q 0.21 TCGA-DK-A3X1-01 1 40323037 40323037 C G TRIT1 Missense_Mutation p.R76T 0.20 tolerated(0.22) benign(0.155) TCGA-DK-A3X1-01 1 40713588 40713588 C G TMCO2 5'UTR 0.16 TCGA-DK-A3X1-01 1 42922574 42922574 C T PPCS Missense_Mutation p.S113L 0.17 tolerated(0.18) benign(0.003) TCGA-DK-A3X1-01 1 43908528 43908528 G C SZT2 Missense_Mutation p.E2673D 0.18 tolerated(1) benign(0.163) TCGA-DK-A3X1-01 1 45268728 45268728 C T PLK3 Missense_Mutation p.S284L 0.24 tolerated(0.11) probably_damaging(0.981) TCGA-DK-A3X1-01 1 46159475 46159475 G T TMEM69 Silent p.L214L 0.22 TCGA-DK-A3X1-01 1 46669164 46669164 G C LURAP1 Missense_Mutation p.K22N 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A3X1-01 1 47183850 47183850 C T EFCAB14 5'UTR 0.28 TCGA-DK-A3X1-01 1 47284418 47284418 C T CYP4B1 Missense_Mutation p.L491F 0.22 deleterious(0.03) probably_damaging(0.947) TCGA-DK-A3X1-01 1 51934202 51934202 C T EPS15 Silent p.Q84Q 0.15 TCGA-DK-A3X1-01 1 52940569 52940569 C A ZCCHC11 Missense_Mutation p.D888Y 0.38 deleterious(0) possibly_damaging(0.905) TCGA-DK-A3X1-01 1 52940929 52940929 C T ZCCHC11 Missense_Mutation p.E768K 0.30 tolerated(0.08) benign(0.004) TCGA-DK-A3X1-01 1 52941053 52941053 C G ZCCHC11 Missense_Mutation p.E726D 0.25 tolerated(0.13) benign(0.007) TCGA-DK-A3X1-01 1 52941062 52941062 C T ZCCHC11 Silent p.K723K 0.25 TCGA-DK-A3X1-01 1 54348950 54348950 C T YIPF1 Splice_Site p.X11_splice 0.17 TCGA-DK-A3X1-01 1 54359913 54359913 G A DIO1 Silent p.L10L 0.18 TCGA-DK-A3X1-01 1 54653322 54653322 C T CYB5RL Intron 0.17 TCGA-DK-A3X1-01 1 55266753 55266753 C T TTC22 Silent p.E28E 0.25 TCGA-DK-A3X1-01 1 59248200 59248200 C T JUN Silent p.L181L 0.38 TCGA-DK-A3X1-01 1 63003725 63003725 G A DOCK7 Missense_Mutation p.S1072L 0.12 tolerated(0.06) benign(0.038) TCGA-DK-A3X1-01 1 68948008 68948008 C T DEPDC1 Missense_Mutation p.E495K 0.20 tolerated(0.12) benign(0.004) TCGA-DK-A3X1-01 1 70904856 70904856 C T CTH 3'UTR 0.28 TCGA-DK-A3X1-01 1 74492542 74492542 C T LRRIQ3 Silent p.V610V 0.13 TCGA-DK-A3X1-01 1 75065508 75065508 C T C1orf173 Missense_Mutation p.D533N 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-DK-A3X1-01 1 75198988 75198988 C T TYW3 Silent p.L20L 0.28 TCGA-DK-A3X1-01 1 8073944 8073944 G C ERRFI1 Missense_Mutation p.P239A 0.12 tolerated(0.38) benign(0.004) TCGA-DK-A3X1-01 1 84864241 84864241 G A DNASE2B 5'UTR 0.33 TCGA-DK-A3X1-01 1 85787136 85787136 C G DDAH1 Nonstop_Mutation p.*286Sext*43 0.21 TCGA-DK-A3X1-01 1 8617577 8617577 C G RERE Missense_Mutation p.K176N 0.27 probably_damaging(0.977) TCGA-DK-A3X1-01 1 87797934 87797934 G C LMO4 Missense_Mutation p.R79T 0.46 deleterious(0) possibly_damaging(0.893) TCGA-DK-A3X1-01 1 94496677 94496677 C G ABCA4 Splice_Site p.X1377_splice 0.26 TCGA-DK-A3X1-01 20 10653409 10653409 G A JAG1 Silent p.L109L 0.32 TCGA-DK-A3X1-01 20 18477724 18477724 C T RBBP9 Missense_Mutation p.E30K 0.11 tolerated(0.39) benign(0.007) TCGA-DK-A3X1-01 20 20177348 20177348 G T C20orf26 Silent p.L575L 0.35 TCGA-DK-A3X1-01 20 24988313 24988313 G C ACSS1 3'UTR 0.19 TCGA-DK-A3X1-01 20 30822586 30822586 G C POFUT1 3'UTR 0.19 TCGA-DK-A3X1-01 20 31021535 31021535 C T ASXL1 Nonsense_Mutation p.Q512* 0.17 TCGA-DK-A3X1-01 20 31023784 31023784 G C ASXL1 Missense_Mutation p.R1090T 0.21 deleterious(0.01) benign(0.07) TCGA-DK-A3X1-01 20 33530781 33530781 G A GSS Missense_Mutation p.R102C 0.36 deleterious(0) possibly_damaging(0.812) TCGA-DK-A3X1-01 20 34843674 34843674 G T AAR2 3'UTR 0.35 TCGA-DK-A3X1-01 20 36634718 36634718 C G TTI1 Missense_Mutation p.R795T 0.42 tolerated(0.52) benign(0.001) TCGA-DK-A3X1-01 20 36888930 36888930 G A KIAA1755 5'UTR 0.09 TCGA-DK-A3X1-01 20 39832521 39832521 C A ZHX3 Nonsense_Mutation p.E346* 0.37 TCGA-DK-A3X1-01 20 39990162 39990162 G C EMILIN3 Missense_Mutation p.Q683E 0.16 deleterious(0) benign(0.257) TCGA-DK-A3X1-01 20 42344734 42344734 G C MYBL2 3'UTR 0.16 TCGA-DK-A3X1-01 20 44538206 44538206 G A PLTP Missense_Mutation p.S145F 0.11 deleterious(0) probably_damaging(0.981) TCGA-DK-A3X1-01 20 44567904 44567904 C T PCIF1 Missense_Mutation p.R59C 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 20 44577586 44577586 C A ZNF335 3'UTR 0.12 TCGA-DK-A3X1-01 20 44578480 44578480 C T ZNF335 Missense_Mutation p.D1210N 0.12 deleterious(0) probably_damaging(0.971) TCGA-DK-A3X1-01 20 45192108 45192108 G T SLC13A3 Nonsense_Mutation p.S526* 0.34 TCGA-DK-A3X1-01 20 46267858 46267858 C G NCOA3 Missense_Mutation p.I873M 0.24 tolerated(0.16) benign(0.322) TCGA-DK-A3X1-01 20 47859135 47859135 G C DDX27 Missense_Mutation p.K738N 0.15 tolerated(0.13) benign(0.006) TCGA-DK-A3X1-01 20 47888002 47888002 C G ZNFX1 Missense_Mutation p.R116T 0.19 deleterious_low_confidence(0.04) benign(0.367) TCGA-DK-A3X1-01 20 48699389 48699389 G A UBE2V1 Silent p.V143V 0.18 TCGA-DK-A3X1-01 20 50418972 50418972 G A SALL4 5'UTR 0.12 TCGA-DK-A3X1-01 20 54824451 54824451 G C MC3R Missense_Mutation p.E184D 0.10 tolerated(0.77) benign(0.075) TCGA-DK-A3X1-01 20 57484238 57484238 G A GNAS Silent p.V827V 0.18 TCGA-DK-A3X1-01 20 60575275 60575275 C A TAF4 Missense_Mutation p.V898L 0.10 benign(0.054) TCGA-DK-A3X1-01 20 61512984 61512984 C G DIDO1 Missense_Mutation p.D1442H 0.33 benign(0.209) TCGA-DK-A3X1-01 20 61936863 61936863 C T COL20A1 Silent p.F96F 0.50 TCGA-DK-A3X1-01 20 62200734 62200734 G A HELZ2 Silent p.L285L 0.25 TCGA-DK-A3X1-01 20 62701842 62701842 G C TCEA2 Missense_Mutation p.E225Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-DK-A3X1-01 21 10863026 10863026 G A IGHV1OR21-1 Missense_Mutation p.E108K 0.07 deleterious(0.03) benign(0.241) TCGA-DK-A3X1-01 21 33039654 33039654 C G SOD1 Nonsense_Mutation p.S108* 0.10 TCGA-DK-A3X1-01 21 41496164 41496164 G A DSCAM Silent p.I1218I 0.23 TCGA-DK-A3X1-01 21 45107624 45107624 G T RRP1B Nonsense_Mutation p.E457* 0.30 TCGA-DK-A3X1-01 21 46603308 46603308 C G ADARB1 Missense_Mutation p.Q427E 0.10 tolerated(1) benign(0.042) TCGA-DK-A3X1-01 21 47663416 47663416 C T MCM3AP Silent p.L1753L 0.16 TCGA-DK-A3X1-01 22 19506422 19506422 C A CDC45 Silent p.L596L 0.25 TCGA-DK-A3X1-01 22 19709228 19709228 G T SEPT5 Silent p.R261R 0.27 TCGA-DK-A3X1-01 22 19839388 19839388 G A C22orf29 Nonsense_Mutation p.Q133* 0.18 TCGA-DK-A3X1-01 22 21982575 21982575 G A YDJC 3'UTR 0.28 TCGA-DK-A3X1-01 22 25016336 25016336 G T GGT1 Nonsense_Mutation p.E142* 0.15 TCGA-DK-A3X1-01 22 25297899 25297899 G A SGSM1 Missense_Mutation p.E959K 0.69 deleterious(0) possibly_damaging(0.507) TCGA-DK-A3X1-01 22 30733035 30733035 C A SF3A1 Nonsense_Mutation p.E696* 0.26 TCGA-DK-A3X1-01 22 31722980 31722980 G T PATZ1 Missense_Mutation p.S654Y 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A3X1-01 22 32334043 32334043 G C C22orf24 Missense_Mutation p.Q4E 0.19 deleterious_low_confidence(0) benign(0.092) TCGA-DK-A3X1-01 22 36123215 36123215 G C APOL5 Missense_Mutation p.R367P 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-DK-A3X1-01 22 36684830 36684830 C A MYH9 Silent p.R1571R 0.13 TCGA-DK-A3X1-01 22 36894043 36894043 C T FOXRED2 Silent p.L459L 0.26 TCGA-DK-A3X1-01 22 38323565 38323565 C G MICALL1 Nonsense_Mutation p.S538* 0.17 TCGA-DK-A3X1-01 22 38323678 38323678 C G MICALL1 Missense_Mutation p.Q576E 0.15 tolerated(0.24) possibly_damaging(0.816) TCGA-DK-A3X1-01 22 38964353 38964353 C T DMC1 Intron 0.38 TCGA-DK-A3X1-01 22 39425374 39425374 G A APOBEC3D Silent p.P204P 0.31 TCGA-DK-A3X1-01 22 39477087 39477087 C T APOBEC3G Silent p.F107F 0.12 TCGA-DK-A3X1-01 22 39710727 39710727 C T RPL3 Silent p.Q271Q 0.23 TCGA-DK-A3X1-01 22 40283812 40283812 C G ENTHD1 5'UTR 0.24 TCGA-DK-A3X1-01 22 42422777 42422777 C G WBP2NL Silent p.V174V 0.36 TCGA-DK-A3X1-01 22 43230283 43230283 C A ARFGAP3 Nonsense_Mutation p.E148* 0.39 TCGA-DK-A3X1-01 22 43447825 43447825 C T TTLL1 Silent p.L320L 0.19 TCGA-DK-A3X1-01 22 45785753 45785753 G A SMC1B Missense_Mutation p.H524Y 0.34 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A3X1-01 22 46327115 46327115 C T WNT7B Missense_Mutation p.E145K 0.17 tolerated(0.37) benign(0.031) TCGA-DK-A3X1-01 22 46655581 46655581 A G PKDREJ Silent p.H1213H 0.16 TCGA-DK-A3X1-01 22 50719197 50719197 C T PLXNB2 Silent p.L1323L 0.21 TCGA-DK-A3X1-01 2 10139097 10139097 C T GRHL1 Missense_Mutation p.S561L 0.09 deleterious(0) probably_damaging(0.996) TCGA-DK-A3X1-01 2 101627417 101627417 C T TBC1D8 Missense_Mutation p.E982K 0.14 tolerated(0.74) probably_damaging(0.983) TCGA-DK-A3X1-01 2 103068601 103068601 C G IL18RAP Missense_Mutation p.T587R 0.20 tolerated(0.5) benign(0) TCGA-DK-A3X1-01 2 10582001 10582001 T C ODC1 Missense_Mutation p.Y323C 0.17 deleterious(0) probably_damaging(0.996) TCGA-DK-A3X1-01 2 108924994 108924994 G A SULT1C2 3'UTR 0.33 TCGA-DK-A3X1-01 2 120703971 120703971 G A PTPN4 Missense_Mutation p.E524K 0.20 tolerated(0.11) possibly_damaging(0.906) TCGA-DK-A3X1-01 2 122145474 122145474 C A CLASP1 Missense_Mutation p.Q1044H 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A3X1-01 2 122522976 122522976 C T TSN 3'UTR 0.35 TCGA-DK-A3X1-01 2 128018835 128018835 C T ERCC3 Missense_Mutation p.R678K 0.25 tolerated(0.07) benign(0.407) TCGA-DK-A3X1-01 2 131888316 131888316 G A PLEKHB2 Missense_Mutation p.D106N 0.16 deleterious(0) probably_damaging(0.987) TCGA-DK-A3X1-01 2 133541789 133541789 A G NCKAP5 Silent p.I865I 0.21 TCGA-DK-A3X1-01 2 135908057 135908057 C T RAB3GAP1 Missense_Mutation p.S681L 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 2 1500420 1500420 G A TPO Missense_Mutation p.E757K 0.34 tolerated(0.56) benign(0.044) TCGA-DK-A3X1-01 2 157186448 157186448 G A NR4A2 Missense_Mutation p.S84F 0.16 deleterious(0) possibly_damaging(0.702) TCGA-DK-A3X1-01 2 160042372 160042372 G C TANC1 Missense_Mutation p.E861Q 0.17 deleterious(0.02) benign(0.052) TCGA-DK-A3X1-01 2 166908450 166908450 G C SCN1A Nonsense_Mutation p.S248* 0.16 TCGA-DK-A3X1-01 2 170428653 170428653 G A FASTKD1 5'UTR 0.33 TCGA-DK-A3X1-01 2 170669018 170669018 T C METTL5 Splice_Site p.X181_splice 0.34 TCGA-DK-A3X1-01 2 172822425 172822425 C G HAT1 Missense_Mutation p.L203V 0.14 tolerated(0.43) benign(0.01) TCGA-DK-A3X1-01 2 172841129 172841129 G A HAT1 Missense_Mutation p.R286Q 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 2 179197760 179197760 G A OSBPL6 Missense_Mutation p.D217N 0.14 tolerated(0.52) benign(0.171) TCGA-DK-A3X1-01 2 179603040 179603040 C T TTN Missense_Mutation p.G4714S 0.17 TCGA-DK-A3X1-01 2 179605533 179605533 G T TTN Missense_Mutation p.L4143I 0.20 TCGA-DK-A3X1-01 2 183582961 183582961 G A DNAJC10 Missense_Mutation p.E50K 0.20 deleterious(0) possibly_damaging(0.871) TCGA-DK-A3X1-01 2 183860508 183860508 G C NCKAP1 Missense_Mutation p.A227G 0.15 tolerated(0.07) benign(0.248) TCGA-DK-A3X1-01 2 190428686 190428686 G A SLC40A1 Silent p.L342L 0.13 TCGA-DK-A3X1-01 2 193049159 193049159 C T TMEFF2 Silent p.Q111Q 0.19 TCGA-DK-A3X1-01 2 196834710 196834710 G C DNAH7 Missense_Mutation p.Q723E 0.11 tolerated(0.31) benign(0.005) TCGA-DK-A3X1-01 2 197004437 197004437 G C STK17B Missense_Mutation p.S248C 0.38 deleterious(0) probably_damaging(0.996) TCGA-DK-A3X1-01 2 197865158 197865158 C G ANKRD44 Missense_Mutation p.R810T 0.11 tolerated(0.44) benign(0.06) TCGA-DK-A3X1-01 2 198257807 198257807 T C SF3B1 Silent p.V1215V 0.29 TCGA-DK-A3X1-01 2 198274635 198274635 C T SF3B1 Missense_Mutation p.D255N 0.16 deleterious(0.01) benign(0.294) TCGA-DK-A3X1-01 2 198358196 198358196 C A HSPD1 Missense_Mutation p.D241Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-DK-A3X1-01 2 201761901 201761901 C G NIF3L1 Missense_Mutation p.H277D 0.21 deleterious(0.01) possibly_damaging(0.484) TCGA-DK-A3X1-01 2 20205794 20205794 C A MATN3 Missense_Mutation p.Q167H 0.21 deleterious(0) probably_damaging(0.996) TCGA-DK-A3X1-01 2 202154187 202154187 G A ALS2CR12 Missense_Mutation p.H402Y 0.23 tolerated(1) benign(0.004) TCGA-DK-A3X1-01 2 202700471 202700471 C G CDK15 Missense_Mutation p.S279C 0.26 deleterious(0.03) possibly_damaging(0.873) TCGA-DK-A3X1-01 2 203831746 203831746 A G CARF Missense_Mutation p.K293R 0.15 tolerated(0.07) benign(0.052) TCGA-DK-A3X1-01 2 20647712 20647712 G C RHOB Missense_Mutation p.K162N 0.13 deleterious(0.01) possibly_damaging(0.454) TCGA-DK-A3X1-01 2 207169584 207169584 C T ZDBF2 Missense_Mutation p.S111L 0.40 tolerated(0.15) benign(0.307) TCGA-DK-A3X1-01 2 207629999 207629999 C T MDH1B 5'UTR 0.22 TCGA-DK-A3X1-01 2 216177199 216177199 G A ATIC Intron 0.33 TCGA-DK-A3X1-01 2 219114628 219114628 G C ARPC2 Missense_Mutation p.E288Q 0.20 deleterious(0.01) possibly_damaging(0.883) TCGA-DK-A3X1-01 2 219128518 219128518 C G GPBAR1 3'UTR 0.26 TCGA-DK-A3X1-01 2 225652012 225652012 C G DOCK10 Missense_Mutation p.E1841Q 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A3X1-01 2 227661897 227661897 G A IRS1 Missense_Mutation p.R520W 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-DK-A3X1-01 2 228220436 228220436 G C MFF Missense_Mutation p.D286H 0.37 deleterious(0) possibly_damaging(0.757) TCGA-DK-A3X1-01 2 230723948 230723948 C A TRIP12 Missense_Mutation p.Q147H 0.22 deleterious_low_confidence(0) benign(0.259) TCGA-DK-A3X1-01 2 232146826 232146826 C T ARMC9 Missense_Mutation p.R536C 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 2 233398643 233398643 C G CHRND Silent p.L350L 0.20 TCGA-DK-A3X1-01 2 233399028 233399028 G A CHRND Missense_Mutation p.M449I 0.22 tolerated(0.18) benign(0.012) TCGA-DK-A3X1-01 2 233986856 233986856 G A INPP5D Missense_Mutation p.D80N 0.13 tolerated(0.26) possibly_damaging(0.899) TCGA-DK-A3X1-01 2 238280791 238280791 G C COL6A3 Missense_Mutation p.S1290C 0.33 probably_damaging(0.981) TCGA-DK-A3X1-01 2 240958025 240958025 G A NDUFA10 Silent p.F164F 0.11 TCGA-DK-A3X1-01 2 242176173 242176173 C G HDLBP Missense_Mutation p.E921Q 0.33 tolerated(0.28) benign(0.035) TCGA-DK-A3X1-01 2 242815144 242815144 C T CXXC11 Silent p.F479F 0.16 TCGA-DK-A3X1-01 2 26706399 26706399 C G OTOF Missense_Mutation p.K441N 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A3X1-01 2 26800472 26800472 A T C2orf70 Missense_Mutation p.E146V 0.12 deleterious(0.03) benign(0.319) TCGA-DK-A3X1-01 2 27589789 27589789 G T EIF2B4 Nonsense_Mutation p.S363* 0.14 TCGA-DK-A3X1-01 2 27589796 27589796 G T EIF2B4 Missense_Mutation p.L361M 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-DK-A3X1-01 2 27656634 27656634 C G NRBP1 Missense_Mutation p.S102C 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 2 27864120 27864120 G A GPN1 Missense_Mutation p.E286K 0.31 deleterious(0.01) possibly_damaging(0.656) TCGA-DK-A3X1-01 2 27908000 27908000 G T SLC4A1AP Nonsense_Mutation p.E658* 0.25 TCGA-DK-A3X1-01 2 29052060 29052060 G A SPDYA Missense_Mutation p.E143K 0.14 deleterious(0) probably_damaging(0.982) TCGA-DK-A3X1-01 2 32617216 32617216 C G BIRC6 Missense_Mutation p.Q317E 0.20 probably_damaging(0.981) TCGA-DK-A3X1-01 2 3596688 3596688 C A RNASEH1 Missense_Mutation p.R175I 0.11 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 2 37035867 37035867 C T VIT Missense_Mutation p.R548C 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X1-01 2 37041503 37041503 G A VIT Silent p.%3D 0.42 TCGA-DK-A3X1-01 2 37402322 37402322 G C SULT6B1 Missense_Mutation p.L155V 0.15 tolerated(0.15) benign(0.014) TCGA-DK-A3X1-01 2 37410658 37410658 C G SULT6B1 Splice_Site p.X67_splice 0.28 TCGA-DK-A3X1-01 2 37516589 37516589 C G PRKD3 Missense_Mutation p.K209N 0.32 tolerated(0.06) possibly_damaging(0.536) TCGA-DK-A3X1-01 2 38302448 38302448 C T CYP1B1 Silent p.S28S 0.28 TCGA-DK-A3X1-01 2 44041638 44041638 G A ABCG5 Silent p.F580F 0.13 TCGA-DK-A3X1-01 2 48027189 48027189 C G MSH6 Missense_Mutation p.F689L 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A3X1-01 2 54041677 54041677 C T ERLEC1 Intron 0.14 TCGA-DK-A3X1-01 2 55900125 55900125 G T PNPT1 Missense_Mutation p.Q257K 0.12 tolerated(0.43) benign(0.002) TCGA-DK-A3X1-01 2 69053293 69053293 C G ARHGAP25 Silent p.V636V 0.13 TCGA-DK-A3X1-01 2 7018251 7018251 G A RSAD2 Missense_Mutation p.R107K 0.35 tolerated(0.25) benign(0.02) TCGA-DK-A3X1-01 2 73226123 73226123 G T SFXN5 Missense_Mutation p.F163L 0.19 tolerated(0.18) benign(0.036) TCGA-DK-A3X1-01 2 73487572 73487572 C A FBXO41 Missense_Mutation p.E798D 0.15 deleterious(0.01) possibly_damaging(0.496) TCGA-DK-A3X1-01 2 73519500 73519500 G A EGR4 Silent p.V285V 0.24 TCGA-DK-A3X1-01 2 73957849 73957849 C G TPRKB Missense_Mutation p.L93F 0.12 tolerated(1) benign(0.013) TCGA-DK-A3X1-01 2 74466593 74466593 C T SLC4A5 Missense_Mutation p.G730R 0.31 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X1-01 2 74699709 74699709 C G MRPL53 Missense_Mutation p.V27L 0.14 deleterious(0.03) probably_damaging(0.983) TCGA-DK-A3X1-01 2 74725193 74725193 G A LBX2 Missense_Mutation p.S149L 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A3X1-01 2 74749805 74749805 G C DQX1 Nonsense_Mutation p.S466* 0.14 TCGA-DK-A3X1-01 2 74763222 74763222 G C LOXL3 Silent p.L383L 0.15 TCGA-DK-A3X1-01 2 80530006 80530006 C T LRRTM1 Silent p.G313G 0.35 TCGA-DK-A3X1-01 2 88999546 88999546 G C RPIA Missense_Mutation p.E122D 0.11 tolerated(0.21) benign(0.082) TCGA-DK-A3X1-01 2 89544561 89544561 A C IGKV2-30 Missense_Mutation p.D21E 0.13 tolerated(0.17) benign(0.047) TCGA-DK-A3X1-01 2 9628347 9628347 C T IAH1 Silent p.L212L 0.13 TCGA-DK-A3X1-01 2 98206005 98206005 C G ANKRD36B RNA 0.18 TCGA-DK-A3X1-01 2 98844712 98844712 T G VWA3B Missense_Mutation p.S689R 0.18 tolerated(0.92) benign(0.001) TCGA-DK-A3X1-01 3 100432575 100432575 C T TFG Nonsense_Mutation p.Q16* 0.31 TCGA-DK-A3X1-01 3 100432661 100432661 C T TFG Silent p.F44F 0.36 TCGA-DK-A3X1-01 3 101451356 101451356 G A CEP97 Missense_Mutation p.E196K 0.13 tolerated(0.09) benign(0.23) TCGA-DK-A3X1-01 3 101540511 101540511 C T NXPE3 Nonsense_Mutation p.R465* 0.15 TCGA-DK-A3X1-01 3 101540531 101540531 C T NXPE3 Silent p.L471L 0.13 TCGA-DK-A3X1-01 3 112300027 112300027 C G SLC35A5 Missense_Mutation p.P355A 0.13 tolerated(0.08) probably_damaging(1) TCGA-DK-A3X1-01 3 113002302 113002302 C G BOC Missense_Mutation p.L826V 0.17 tolerated(0.51) benign(0.007) TCGA-DK-A3X1-01 3 113379239 113379239 C G KIAA2018 Missense_Mutation p.Q430H 0.16 probably_damaging(0.998) TCGA-DK-A3X1-01 3 114069835 114069835 C T ZBTB20 Missense_Mutation p.E364K 0.23 deleterious(0.03) possibly_damaging(0.905) TCGA-DK-A3X1-01 3 122880859 122880859 G T PDIA5 3'UTR 0.19 TCGA-DK-A3X1-01 3 123419600 123419600 C T MYLK Silent p.V905V 0.12 TCGA-DK-A3X1-01 3 123634090 123634090 G A CCDC14 Nonsense_Mutation p.Q759* 0.18 TCGA-DK-A3X1-01 3 128181387 128181387 C T DNAJB8 3'UTR 0.23 TCGA-DK-A3X1-01 3 128631370 128631370 G A ACAD9 Missense_Mutation p.E596K 0.41 tolerated(0.67) benign(0.008) TCGA-DK-A3X1-01 3 12877707 12877707 C T RPL32 Silent p.E98E 0.44 TCGA-DK-A3X1-01 3 129007759 129007759 C T HMCES Silent p.F82F 0.11 TCGA-DK-A3X1-01 3 130287183 130287183 C T COL6A6 Silent p.F712F 0.19 TCGA-DK-A3X1-01 3 130799266 130799266 G C NEK11 Splice_Site p.X57_splice 0.14 TCGA-DK-A3X1-01 3 133921684 133921684 C T RYK Silent p.T224T 0.16 TCGA-DK-A3X1-01 3 136574418 136574418 C G SLC35G2 Missense_Mutation p.I372M 0.17 tolerated(0.09) benign(0.171) TCGA-DK-A3X1-01 3 13670693 13670693 C T FBLN2 Missense_Mutation p.R915C 0.20 deleterious(0) probably_damaging(0.924) TCGA-DK-A3X1-01 3 137981378 137981378 C T NME9 3'UTR 0.25 TCGA-DK-A3X1-01 3 139108415 139108415 G A COPB2 5'UTR 0.11 TCGA-DK-A3X1-01 3 14190071 14190071 G A XPC Missense_Mutation p.S804F 0.08 deleterious(0) probably_damaging(0.948) TCGA-DK-A3X1-01 3 150883739 150883739 C G MED12L Missense_Mutation p.F488L 0.20 deleterious(0.01) benign(0.327) TCGA-DK-A3X1-01 3 152880442 152880442 G A RAP2B 5'UTR 0.22 TCGA-DK-A3X1-01 3 15477906 15477906 C G EAF1 Missense_Mutation p.S195C 0.60 deleterious(0.01) possibly_damaging(0.707) TCGA-DK-A3X1-01 3 15477986 15477986 C T EAF1 Missense_Mutation p.P222S 0.63 tolerated(0.43) benign(0.001) TCGA-DK-A3X1-01 3 161221331 161221331 C T OTOL1 Silent p.F345F 0.24 TCGA-DK-A3X1-01 3 161221535 161221535 C G OTOL1 Missense_Mutation p.F413L 0.10 tolerated(1) possibly_damaging(0.505) TCGA-DK-A3X1-01 3 169539961 169539961 G T LRRIQ4 Missense_Mutation p.R84S 0.10 tolerated(0.28) benign(0.034) TCGA-DK-A3X1-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A3X1-01 3 183503990 183503990 C T YEATS2 Silent p.L938L 0.35 TCGA-DK-A3X1-01 3 183883967 183883967 G T DVL3 Missense_Mutation p.D273Y 0.10 deleterious(0) probably_damaging(0.991) TCGA-DK-A3X1-01 3 184059850 184059850 C T FAM131A Intron 0.30 TCGA-DK-A3X1-01 3 186947621 186947621 C G MASP1 3'Flank 0.24 TCGA-DK-A3X1-01 3 193031929 193031929 G A ATP13A5 Missense_Mutation p.P738S 0.33 tolerated(0.22) benign(0.004) TCGA-DK-A3X1-01 3 195395488 195395488 G A SDHAP2 RNA 0.12 TCGA-DK-A3X1-01 3 195516055 195516055 G T MUC4 Nonsense_Mutation p.S799* 0.10 TCGA-DK-A3X1-01 3 195517505 195517505 G C MUC4 Missense_Mutation p.Q316E 0.18 unknown(0) TCGA-DK-A3X1-01 3 27233641 27233641 G C NEK10 Missense_Mutation p.S795C 0.30 tolerated(0.25) benign(0.02) TCGA-DK-A3X1-01 3 33467109 33467109 C T UBP1 Missense_Mutation p.D80N 0.47 deleterious(0) possibly_damaging(0.876) TCGA-DK-A3X1-01 3 37574872 37574872 C T ITGA9 Nonsense_Mutation p.Q481* 0.18 TCGA-DK-A3X1-01 3 38139354 38139354 G A DLEC1 Missense_Mutation p.M895I 0.20 tolerated(0.16) benign(0.016) TCGA-DK-A3X1-01 3 38359724 38359724 C G SLC22A14 Nonsense_Mutation p.S590* 0.17 TCGA-DK-A3X1-01 3 38565873 38565873 C T EXOG 3'UTR 0.49 TCGA-DK-A3X1-01 3 40352532 40352532 G A EIF1B Silent p.V60V 0.14 TCGA-DK-A3X1-01 3 45441783 45441783 C G LARS2 Missense_Mutation p.S94C 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 3 45872601 45872601 C G LZTFL1 Missense_Mutation p.E162D 0.16 tolerated(0.21) benign(0.029) TCGA-DK-A3X1-01 3 47459204 47459204 G C SCAP Missense_Mutation p.L854V 0.25 tolerated(0.54) benign(0.044) TCGA-DK-A3X1-01 3 49040020 49040020 G T P4HTM Missense_Mutation p.D239Y 0.15 deleterious(0) probably_damaging(0.959) TCGA-DK-A3X1-01 3 49054900 49054900 T C DALRD3 Silent p.L255L 0.36 TCGA-DK-A3X1-01 3 49094851 49094851 G A QRICH1 Missense_Mutation p.S261L 0.16 tolerated(0.14) benign(0.028) TCGA-DK-A3X1-01 3 49314142 49314142 G A C3orf62 Missense_Mutation p.S55F 0.19 tolerated(0.05) benign(0.005) TCGA-DK-A3X1-01 3 49759286 49759286 C T GMPPB Missense_Mutation p.E355K 0.25 tolerated(0.08) possibly_damaging(0.657) TCGA-DK-A3X1-01 3 5025300 5025300 C T BHLHE40 Missense_Mutation p.H388Y 0.44 deleterious(0.04) possibly_damaging(0.703) TCGA-DK-A3X1-01 3 50603073 50603073 C G C3orf18 Missense_Mutation p.E20Q 0.11 tolerated_low_confidence(0.07) benign(0.014) TCGA-DK-A3X1-01 3 52090218 52090218 C A DUSP7 Missense_Mutation p.K55N 0.30 deleterious(0.02) possibly_damaging(0.654) TCGA-DK-A3X1-01 3 52183865 52183865 C T POC1A Missense_Mutation p.R81Q 0.17 tolerated(0.2) probably_damaging(0.997) TCGA-DK-A3X1-01 3 62188855 62188855 G A PTPRG Silent p.A462A 0.16 TCGA-DK-A3X1-01 3 62385241 62385241 C T CADPS Missense_Mutation p.R1301Q 0.21 tolerated(0.05) benign(0.238) TCGA-DK-A3X1-01 3 73453372 73453372 C T PDZRN3 Missense_Mutation p.E365K 0.42 deleterious(0.01) benign(0.032) TCGA-DK-A3X1-01 3 74351884 74351884 C T CNTN3 Silent p.T581T 0.18 TCGA-DK-A3X1-01 4 100235088 100235088 C T ADH1B Missense_Mutation p.E240K 0.15 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A3X1-01 4 104640753 104640753 G A TACR3 Missense_Mutation p.S27L 0.12 deleterious_low_confidence(0.01) benign(0.005) TCGA-DK-A3X1-01 4 107165844 107165844 C T TBCK Missense_Mutation p.E337K 0.21 tolerated(0.08) possibly_damaging(0.644) TCGA-DK-A3X1-01 4 110635385 110635385 G C PLA2G12A 3'UTR 0.26 TCGA-DK-A3X1-01 4 123118351 123118351 G C KIAA1109 Missense_Mutation p.E404Q 0.25 probably_damaging(0.993) TCGA-DK-A3X1-01 4 126367492 126367492 C T FAT4 Missense_Mutation p.S2413L 0.12 possibly_damaging(0.698) TCGA-DK-A3X1-01 4 138452282 138452282 C T PCDH18 Missense_Mutation p.E321K 0.14 deleterious(0.01) probably_damaging(0.947) TCGA-DK-A3X1-01 4 141677148 141677148 C T TBC1D9 Missense_Mutation p.E18K 0.28 deleterious(0) probably_damaging(0.981) TCGA-DK-A3X1-01 4 146859598 146859598 G A ZNF827 5'UTR 0.10 TCGA-DK-A3X1-01 4 148575400 148575400 G C PRMT10 Missense_Mutation p.P550A 0.24 tolerated(0.58) benign(0.005) TCGA-DK-A3X1-01 4 153896615 153896615 G A FHDC1 Silent p.L724L 0.51 TCGA-DK-A3X1-01 4 155717894 155717894 G A RBM46 Intron 0.30 TCGA-DK-A3X1-01 4 158074052 158074052 G A GLRB Missense_Mutation p.E363K 0.33 tolerated(0.38) probably_damaging(0.996) TCGA-DK-A3X1-01 4 158255240 158255240 G C GRIA2 Missense_Mutation p.E412Q 0.12 tolerated(0.4) benign(0.007) TCGA-DK-A3X1-01 4 159092464 159092464 G A FAM198B Missense_Mutation p.R22W 0.33 tolerated(0.19) possibly_damaging(0.835) TCGA-DK-A3X1-01 4 15964632 15964632 C T FGFBP2 Missense_Mutation p.D41N 0.28 tolerated(0.05) probably_damaging(0.943) TCGA-DK-A3X1-01 4 175649820 175649820 C G GLRA3 Missense_Mutation p.Q99H 0.13 deleterious(0) probably_damaging(0.947) TCGA-DK-A3X1-01 4 177098691 177098691 G C WDR17 Missense_Mutation p.K1245N 0.13 tolerated(0.08) benign(0.187) TCGA-DK-A3X1-01 4 184605510 184605510 G A TRAPPC11 Silent p.L473L 0.31 TCGA-DK-A3X1-01 4 187005024 187005024 G C TLR3 Missense_Mutation p.W728C 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 4 2514856 2514856 G A RNF4 Missense_Mutation p.E141K 0.05 deleterious(0) probably_damaging(0.992) TCGA-DK-A3X1-01 4 36122942 36122942 C G ARAP2 Missense_Mutation p.Q1251H 0.23 deleterious(0.02) possibly_damaging(0.656) TCGA-DK-A3X1-01 4 3768990 3768990 C T ADRA2C Silent p.F219F 0.50 TCGA-DK-A3X1-01 4 38776990 38776990 C G TLR10 Silent p.L74L 0.17 TCGA-DK-A3X1-01 4 39450291 39450291 G C KLB Missense_Mutation p.K1040N 0.10 tolerated_low_confidence(0.22) benign(0.001) TCGA-DK-A3X1-01 4 40123716 40123716 G A N4BP2 Missense_Mutation p.E1329K 0.31 tolerated(0.1) possibly_damaging(0.697) TCGA-DK-A3X1-01 4 40440385 40440385 C T RBM47 Missense_Mutation p.E176K 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-DK-A3X1-01 4 47163397 47163397 G A GABRB1 Silent p.L124L 0.20 TCGA-DK-A3X1-01 4 48106932 48106932 G C TXK Missense_Mutation p.L163V 0.12 deleterious(0.03) benign(0.059) TCGA-DK-A3X1-01 4 52861501 52861501 G T LRRC66 Missense_Mutation p.H563N 0.31 tolerated(0.17) benign(0.093) TCGA-DK-A3X1-01 4 55570029 55570029 C T KIT Missense_Mutation p.A299V 0.13 tolerated(0.09) benign(0.08) TCGA-DK-A3X1-01 4 55961025 55961025 G A KDR Missense_Mutation p.S972L 0.29 tolerated(0.46) probably_damaging(0.973) TCGA-DK-A3X1-01 4 55968171 55968171 C T KDR Missense_Mutation p.R720Q 0.16 tolerated(1) benign(0.046) TCGA-DK-A3X1-01 4 65147237 65147237 G A TECRL Silent p.F291F 0.16 TCGA-DK-A3X1-01 4 70146759 70146759 G A UGT2B28 Missense_Mutation p.E181K 0.60 deleterious(0.01) probably_damaging(0.967) TCGA-DK-A3X1-01 4 7194756 7194756 C A SORCS2 Nonsense_Mutation p.S128* 0.30 TCGA-DK-A3X1-01 4 72363215 72363215 C T SLC4A4 Intron 0.34 TCGA-DK-A3X1-01 4 73179451 73179451 C G ADAMTS3 Missense_Mutation p.C563S 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 4 77660799 77660799 C A SHROOM3 Silent p.L491L 0.16 TCGA-DK-A3X1-01 4 77933056 77933056 G C SEPT11 Missense_Mutation p.M169I 0.13 deleterious(0) probably_damaging(0.93) TCGA-DK-A3X1-01 4 77941663 77941663 G A SEPT11 Missense_Mutation p.E265K 0.12 deleterious(0.02) possibly_damaging(0.732) TCGA-DK-A3X1-01 4 79205556 79205556 C T FRAS1 Intron 0.16 TCGA-DK-A3X1-01 4 83788011 83788011 G A SEC31A Silent p.L383L 0.23 TCGA-DK-A3X1-01 4 85556483 85556483 T G CDS1 Missense_Mutation p.F263L 0.15 deleterious(0.04) possibly_damaging(0.791) TCGA-DK-A3X1-01 4 8583003 8583003 G A GPR78 Silent p.A98A 0.47 TCGA-DK-A3X1-01 4 88036295 88036295 G A AFF1 Silent p.V770V 0.18 TCGA-DK-A3X1-01 4 88394928 88394928 C G SPARCL1 Nonstop_Mutation p.*665Sext*16 0.14 TCGA-DK-A3X1-01 4 90171274 90171274 C G GPRIN3 5'UTR 0.14 TCGA-DK-A3X1-01 5 126206248 126206248 C T MARCH3 3'UTR 0.23 TCGA-DK-A3X1-01 5 132009697 132009697 G C IL4 5'UTR 0.44 TCGA-DK-A3X1-01 5 132424172 132424172 C T HSPA4 Silent p.I354I 0.37 TCGA-DK-A3X1-01 5 132424226 132424226 C G HSPA4 Silent p.V372V 0.43 TCGA-DK-A3X1-01 5 137213275 137213275 C G MYOT Missense_Mutation p.Q200E 0.20 tolerated(0.87) benign(0.003) TCGA-DK-A3X1-01 5 137474391 137474391 C T NME5 Missense_Mutation p.E27K 0.36 tolerated(0.48) benign(0.038) TCGA-DK-A3X1-01 5 137622209 137622209 G A CDC25C Silent p.F379F 0.25 TCGA-DK-A3X1-01 5 140346657 140346657 C T PCDHAC2 Silent p.N102N 0.09 TCGA-DK-A3X1-01 5 140594200 140594200 G A PCDHB13 Missense_Mutation p.E169K 0.40 tolerated_low_confidence(0.07) benign(0.001) TCGA-DK-A3X1-01 5 140767821 140767821 G C PCDHGB4 Missense_Mutation p.E124Q 0.12 tolerated(1) benign(0.065) TCGA-DK-A3X1-01 5 145442003 145442003 G T SH3RF2 Silent p.V643V 0.16 TCGA-DK-A3X1-01 5 148687015 148687015 G C AFAP1L1 Missense_Mutation p.E196Q 0.14 deleterious(0) benign(0.42) TCGA-DK-A3X1-01 5 150901233 150901233 C T FAT2 Missense_Mutation p.E3641K 0.18 probably_damaging(0.999) TCGA-DK-A3X1-01 5 154272068 154272068 C T GEMIN5 Silent p.L1213L 0.17 TCGA-DK-A3X1-01 5 156375436 156375436 G A TIMD4 Nonsense_Mutation p.Q279* 0.42 TCGA-DK-A3X1-01 5 169469046 169469046 C T DOCK2 Silent p.V1262V 0.53 TCGA-DK-A3X1-01 5 175843355 175843355 C T CLTB Missense_Mutation p.D4N 0.30 deleterious(0.04) unknown(0) TCGA-DK-A3X1-01 5 177422990 177422990 C T PROP1 5'UTR 0.33 TCGA-DK-A3X1-01 5 179249954 179249954 C T SQSTM1 Intron 0.14 TCGA-DK-A3X1-01 5 24535867 24535867 T C CDH10 Silent p.R197R 0.09 TCGA-DK-A3X1-01 5 26881244 26881244 C T CDH9 3'UTR 0.18 TCGA-DK-A3X1-01 5 33662105 33662105 G C ADAMTS12 Missense_Mutation p.S319C 0.31 deleterious(0.01) probably_damaging(0.976) TCGA-DK-A3X1-01 5 33662118 33662118 C T ADAMTS12 Missense_Mutation p.E315K 0.22 deleterious(0) possibly_damaging(0.755) TCGA-DK-A3X1-01 5 34867123 34867123 G A TTC23L Silent p.Q263Q 0.21 TCGA-DK-A3X1-01 5 36141289 36141289 G A LMBRD2 Silent p.F96F 0.13 TCGA-DK-A3X1-01 5 38481806 38481806 G A LIFR Missense_Mutation p.S1062F 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 5 5462600 5462600 G A KIAA0947 Silent p.L1051L 0.23 TCGA-DK-A3X1-01 5 68473423 68473423 G C CCNB1 Missense_Mutation p.V423L 0.49 tolerated(0.12) benign(0) TCGA-DK-A3X1-01 5 70928012 70928012 G A MCCC2 Missense_Mutation p.R268K 0.41 tolerated_low_confidence(0.22) benign(0.03) TCGA-DK-A3X1-01 5 74643117 74643117 G A HMGCR Missense_Mutation p.G180E 0.49 deleterious(0.03) probably_damaging(0.986) TCGA-DK-A3X1-01 5 76989151 76989151 C A TBCA Missense_Mutation p.M62I 0.26 deleterious(0.02) benign(0.242) TCGA-DK-A3X1-01 5 96215522 96215522 C T ERAP2 Missense_Mutation p.H45Y 0.26 tolerated(0.15) benign(0.001) TCGA-DK-A3X1-01 6 102503216 102503216 C G GRIK2 Missense_Mutation p.R775G 0.22 deleterious(0) probably_damaging(0.91) TCGA-DK-A3X1-01 6 109769984 109769984 C A MICAL1 Missense_Mutation p.D539Y 0.20 deleterious(0) probably_damaging(0.921) TCGA-DK-A3X1-01 6 1313343 1313343 C T FOXQ1 Missense_Mutation p.S135L 0.33 deleterious(0) probably_damaging(0.996) TCGA-DK-A3X1-01 6 139183796 139183796 C G ECT2L Missense_Mutation p.Q411E 0.13 tolerated(0.45) benign(0.219) TCGA-DK-A3X1-01 6 142764616 142764616 C T GPR126 Silent p.I1239I 0.21 TCGA-DK-A3X1-01 6 148848652 148848652 C G SASH1 Missense_Mutation p.L450V 0.22 deleterious(0) possibly_damaging(0.772) TCGA-DK-A3X1-01 6 151270192 151270192 C T MTHFD1L Missense_Mutation p.P550L 0.47 deleterious(0) possibly_damaging(0.499) TCGA-DK-A3X1-01 6 152642938 152642938 G A SYNE1 Missense_Mutation p.S5334F 0.24 benign(0.192) TCGA-DK-A3X1-01 6 152719867 152719867 C G SYNE1 Splice_Site p.X2413_splice 0.24 TCGA-DK-A3X1-01 6 157528459 157528459 G T ARID1B Nonsense_Mutation p.E2062* 0.27 TCGA-DK-A3X1-01 6 159262789 159262789 G A OSTCP1 RNA 0.17 TCGA-DK-A3X1-01 6 160525708 160525708 G A IGF2R Silent p.V2356V 0.16 TCGA-DK-A3X1-01 6 160932117 160932117 C T LPAL2 5'Flank 0.15 TCGA-DK-A3X1-01 6 16327637 16327637 G A ATXN1 Missense_Mutation p.P302L 0.14 deleterious(0.01) benign(0.11) TCGA-DK-A3X1-01 6 166864689 166864689 G A RPS6KA2 Missense_Mutation p.H378Y 0.34 deleterious(0.02) benign(0.125) TCGA-DK-A3X1-01 6 166864716 166864716 G T RPS6KA2 Missense_Mutation p.P369T 0.31 deleterious(0.02) possibly_damaging(0.888) TCGA-DK-A3X1-01 6 17626341 17626341 G A NUP153 Missense_Mutation p.S1200L 0.40 deleterious(0.01) benign(0.009) TCGA-DK-A3X1-01 6 17790135 17790135 C G KIF13A Missense_Mutation p.D1077H 0.32 tolerated(0.35) possibly_damaging(0.748) TCGA-DK-A3X1-01 6 17855761 17855761 G C KIF13A Missense_Mutation p.S134C 0.24 deleterious(0.03) possibly_damaging(0.841) TCGA-DK-A3X1-01 6 25466165 25466165 G A LRRC16A Missense_Mutation p.D227N 0.16 deleterious(0.02) possibly_damaging(0.864) TCGA-DK-A3X1-01 6 25811931 25811931 G C SLC17A1 Nonsense_Mutation p.S322* 0.25 TCGA-DK-A3X1-01 6 26508758 26508758 C T BTN1A1 Missense_Mutation p.H313Y 0.33 deleterious(0.02) probably_damaging(1) TCGA-DK-A3X1-01 6 28264604 28264604 G C PGBD1 Missense_Mutation p.K218N 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-A3X1-01 6 30457500 30457500 C G HLA-E Intron 0.21 TCGA-DK-A3X1-01 6 30576867 30576867 C T PPP1R10 Missense_Mutation p.E61K 0.20 tolerated(0.08) benign(0.121) TCGA-DK-A3X1-01 6 30627868 30627868 C T DHX16 Missense_Mutation p.D566N 0.21 tolerated(0.14) unknown(0) TCGA-DK-A3X1-01 6 31592035 31592035 C T PRRC2A Intron 0.31 TCGA-DK-A3X1-01 6 31594883 31594883 G A PRRC2A Missense_Mutation p.E400K 0.21 unknown(0) TCGA-DK-A3X1-01 6 31807506 31807506 C G C6orf48 3'UTR 0.28 TCGA-DK-A3X1-01 6 32036422 32036422 G A TNXB Missense_Mutation p.R1989C 0.24 possibly_damaging(0.857) TCGA-DK-A3X1-01 6 32094926 32094926 G A ATF6B Missense_Mutation p.S99F 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A3X1-01 6 32116994 32116994 C T PRRT1 3'UTR 0.15 TCGA-DK-A3X1-01 6 32154464 32154464 C T PBX2 Missense_Mutation p.E373K 0.29 tolerated_low_confidence(0.09) benign(0.065) TCGA-DK-A3X1-01 6 33411122 33411122 C T SYNGAP1 Silent p.L931L 0.15 TCGA-DK-A3X1-01 6 34506020 34506020 G A SPDEF 3'UTR 0.18 TCGA-DK-A3X1-01 6 36842552 36842552 G A PPIL1 5'UTR 0.31 TCGA-DK-A3X1-01 6 37443108 37443108 G C CMTR1 Missense_Mutation p.Q652H 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 6 401636 401636 G C IRF4 Missense_Mutation p.A320P 0.27 deleterious(0.01) possibly_damaging(0.906) TCGA-DK-A3X1-01 6 41908692 41908692 G A CCND3 Intron 0.17 TCGA-DK-A3X1-01 6 42019184 42019184 G A TAF8 Silent p.L45L 0.20 TCGA-DK-A3X1-01 6 43484819 43484819 G C POLR1C 5'UTR 0.22 TCGA-DK-A3X1-01 6 44222852 44222856 ATCTT - SLC35B2 Frame_Shift_Del p.K296Vfs*39 0.13 TCGA-DK-A3X1-01 6 44374146 44374146 C T CDC5L Missense_Mutation p.T282I 0.20 tolerated(0.24) benign(0.001) TCGA-DK-A3X1-01 6 47221041 47221041 C G TNFRSF21 Missense_Mutation p.R487T 0.20 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X1-01 6 47846150 47846150 G T PTCHD4 Missense_Mutation p.F810L 0.20 tolerated(1) probably_damaging(0.966) TCGA-DK-A3X1-01 6 52052468 52052468 G A IL17A Missense_Mutation p.G32E 0.40 tolerated(0.14) benign(0.03) TCGA-DK-A3X1-01 6 53761655 53761655 G A LRRC1 Missense_Mutation p.E178K 0.23 deleterious(0.03) possibly_damaging(0.633) TCGA-DK-A3X1-01 6 55142257 55142257 C T HCRTR2 Missense_Mutation p.P281L 0.16 tolerated(0.23) benign(0.005) TCGA-DK-A3X1-01 6 56458793 56458793 G A DST Silent p.L1509L 0.15 TCGA-DK-A3X1-01 6 5999356 5999356 C T NRN1 Silent p.L94L 0.12 TCGA-DK-A3X1-01 6 62390905 62390905 C G KHDRBS2 Missense_Mutation p.R338T 0.13 deleterious(0) possibly_damaging(0.614) TCGA-DK-A3X1-01 6 74161943 74161943 C T MB21D1 5'UTR 0.36 TCGA-DK-A3X1-01 6 74490221 74490221 G C CD109 Missense_Mutation p.Q634H 0.12 deleterious(0.03) benign(0.019) TCGA-DK-A3X1-01 6 76412689 76412689 G C SENP6 Missense_Mutation p.E873Q 0.22 tolerated(0.08) possibly_damaging(0.464) TCGA-DK-A3X1-01 6 83839159 83839159 C G DOPEY1 Nonsense_Mutation p.S758* 0.36 TCGA-DK-A3X1-01 6 90052151 90052151 G T UBE2J1 Missense_Mutation p.F43L 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 6 97489422 97489422 G A KLHL32 Missense_Mutation p.G87S 0.09 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 7 100684352 100684352 G A MUC17 Missense_Mutation p.E3219K 0.17 benign(0.438) TCGA-DK-A3X1-01 7 100684883 100684883 G T MUC17 Nonsense_Mutation p.E3396* 0.18 TCGA-DK-A3X1-01 7 100771918 100771918 C T SERPINE1 Nonsense_Mutation p.Q82* 0.10 TCGA-DK-A3X1-01 7 102944862 102944862 A G PMPCB Missense_Mutation p.I221V 0.25 deleterious(0.03) benign(0.256) TCGA-DK-A3X1-01 7 107638920 107638920 G T LAMB1 Missense_Mutation p.F77L 0.12 deleterious(0) possibly_damaging(0.823) TCGA-DK-A3X1-01 7 111400253 111400253 G A DOCK4 Silent p.F1373F 0.17 TCGA-DK-A3X1-01 7 116164881 116164881 C T CAV1 5'UTR 0.55 TCGA-DK-A3X1-01 7 121513587 121513587 C G PTPRZ1 Missense_Mutation p.Q12E 0.26 deleterious_low_confidence(0.04) benign(0.022) TCGA-DK-A3X1-01 7 127544799 127544799 G A SND1 Splice_Site p.X485_splice 0.18 TCGA-DK-A3X1-01 7 127892050 127892050 G A LEP 5'UTR 0.32 TCGA-DK-A3X1-01 7 128452893 128452893 G A CCDC136 Silent p.L891L 0.41 TCGA-DK-A3X1-01 7 130138063 130138063 C A MEST Silent p.I141I 0.20 TCGA-DK-A3X1-01 7 131825454 131825454 G A PLXNA4 Missense_Mutation p.S1781F 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 7 132937919 132937919 C A EXOC4 Nonsense_Mutation p.S21* 0.16 TCGA-DK-A3X1-01 7 138437408 138437408 C T ATP6V0A4 Missense_Mutation p.D331N 0.21 deleterious(0.01) probably_damaging(1) TCGA-DK-A3X1-01 7 140374519 140374519 G A ADCK2 Missense_Mutation p.E348K 0.24 deleterious(0) probably_damaging(0.992) TCGA-DK-A3X1-01 7 141731552 141731552 G C MGAM Missense_Mutation p.E515Q 0.16 tolerated(0.47) benign(0.031) TCGA-DK-A3X1-01 7 142008828 142008828 G C TRBV3-1 Missense_Mutation p.E101Q 0.17 tolerated(0.52) benign(0.401) TCGA-DK-A3X1-01 7 143053718 143053718 G C FAM131B Silent p.L336L 0.18 TCGA-DK-A3X1-01 7 143806767 143806767 C T OR2A2 Missense_Mutation p.S31F 0.13 tolerated(0.14) benign(0.089) TCGA-DK-A3X1-01 7 143884109 143884109 G A ARHGEF35 Silent p.I456I 0.20 TCGA-DK-A3X1-01 7 144060030 144060030 C A ARHGEF5 Missense_Mutation p.Q90K 0.12 tolerated(0.06) benign(0.028) TCGA-DK-A3X1-01 7 148312494 148312494 G A C7orf33 3'UTR 0.11 TCGA-DK-A3X1-01 7 149523999 149523999 C T SSPO Intron 0.12 TCGA-DK-A3X1-01 7 150389979 150389979 T C GIMAP2 Missense_Mutation p.I202T 0.39 tolerated(0.08) possibly_damaging(0.829) TCGA-DK-A3X1-01 7 150649798 150649798 G A KCNH2 Silent p.F424F 0.16 TCGA-DK-A3X1-01 7 150709517 150709517 C T NOS3 Silent p.F1021F 0.50 TCGA-DK-A3X1-01 7 155090019 155090019 C T INSIG1 Silent p.F8F 0.29 TCGA-DK-A3X1-01 7 158663899 158663899 G A WDR60 Missense_Mutation p.E46K 0.30 tolerated(0.06) possibly_damaging(0.878) TCGA-DK-A3X1-01 7 16841376 16841376 G C AGR2 Silent p.L15L 0.14 TCGA-DK-A3X1-01 7 17373647 17373647 C A AHR Missense_Mutation p.Q273K 0.18 deleterious(0.02) possibly_damaging(0.455) TCGA-DK-A3X1-01 7 18801875 18801875 G T HDAC9 Missense_Mutation p.Q713H 0.14 deleterious(0.04) probably_damaging(0.979) TCGA-DK-A3X1-01 7 24849449 24849449 G A OSBPL3 Missense_Mutation p.S765F 0.34 deleterious(0) possibly_damaging(0.866) TCGA-DK-A3X1-01 7 26412157 26412157 G A SNX10 Missense_Mutation p.G191R 0.13 tolerated_low_confidence(0.11) probably_damaging(0.998) TCGA-DK-A3X1-01 7 2686589 2686589 G A TTYH3 Missense_Mutation p.E76K 0.25 tolerated(0.09) benign(0.122) TCGA-DK-A3X1-01 7 27194521 27194521 C T HOXA7 3'UTR 0.26 TCGA-DK-A3X1-01 7 27284678 27284678 G A EVX1 Missense_Mutation p.E147K 0.22 tolerated(0.57) benign(0.004) TCGA-DK-A3X1-01 7 27831832 27831832 G A TAX1BP1 Missense_Mutation p.A416T 0.23 tolerated(0.42) benign(0.099) TCGA-DK-A3X1-01 7 30066184 30066184 G A FKBP14 5'UTR 0.28 TCGA-DK-A3X1-01 7 30087570 30087570 G A PLEKHA8 Missense_Mutation p.E146K 0.24 tolerated(0.11) benign(0.033) TCGA-DK-A3X1-01 7 33057059 33057059 C T NT5C3A Missense_Mutation p.D234N 0.20 tolerated(0.18) benign(0.191) TCGA-DK-A3X1-01 7 44119254 44119254 G C POLM Silent p.L186L 0.15 TCGA-DK-A3X1-01 7 44561680 44561680 C T NPC1L1 Silent p.K933K 0.13 TCGA-DK-A3X1-01 7 45144029 45144029 C T TBRG4 Intron 0.13 TCGA-DK-A3X1-01 7 47344505 47344505 G A TNS3 Missense_Mutation p.S916L 0.09 tolerated(0.07) benign(0.001) TCGA-DK-A3X1-01 7 50070753 50070753 G C ZPBP Missense_Mutation p.S214C 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-DK-A3X1-01 7 5105215 5105215 G C RBAK Missense_Mutation p.D710H 0.15 deleterious_low_confidence(0.01) benign(0.143) TCGA-DK-A3X1-01 7 51092923 51092923 G C COBL Silent p.L1217L 0.23 TCGA-DK-A3X1-01 7 5352267 5352267 C G TNRC18 Missense_Mutation p.R2752T 0.15 unknown(0) TCGA-DK-A3X1-01 7 5540603 5540603 C T FBXL18 Missense_Mutation p.D433N 0.33 tolerated(0.09) possibly_damaging(0.718) TCGA-DK-A3X1-01 7 66459252 66459252 C T SBDS Missense_Mutation p.E69K 0.09 tolerated(0.47) benign(0.32) TCGA-DK-A3X1-01 7 72414059 72414059 G C POM121 Missense_Mutation p.G911A 0.19 deleterious(0) possibly_damaging(0.827) TCGA-DK-A3X1-01 7 87006664 87006664 G A CROT Splice_Site p.X321_splice 0.32 TCGA-DK-A3X1-01 7 87536669 87536669 G C DBF4 Missense_Mutation p.E406Q 0.12 tolerated(0.35) benign(0.319) TCGA-DK-A3X1-01 7 91503796 91503796 C T MTERF Silent p.E104E 0.15 TCGA-DK-A3X1-01 7 99332708 99332708 G C CYP3A7 Silent p.L3L 0.15 TCGA-DK-A3X1-01 7 99704109 99704109 G A AP4M1 Missense_Mutation p.G370E 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 7 99755503 99755503 G A C7orf43 Missense_Mutation p.S157L 0.37 deleterious(0) possibly_damaging(0.765) TCGA-DK-A3X1-01 8 100874104 100874104 G T VPS13B Silent p.R3740R 0.25 TCGA-DK-A3X1-01 8 101165605 101165605 G A POLR2K 3'UTR 0.06 TCGA-DK-A3X1-01 8 101586104 101586104 C T SNX31 Missense_Mutation p.E438K 0.10 deleterious(0.04) possibly_damaging(0.548) TCGA-DK-A3X1-01 8 101586144 101586144 C G SNX31 Missense_Mutation p.K424N 0.07 deleterious(0.03) benign(0.02) TCGA-DK-A3X1-01 8 103341574 103341574 G A UBR5 Silent p.V384V 0.08 TCGA-DK-A3X1-01 8 105361098 105361098 C A DCSTAMP Silent p.V106V 0.08 TCGA-DK-A3X1-01 8 105361151 105361151 G A DCSTAMP Missense_Mutation p.G124D 0.11 deleterious(0) benign(0.211) TCGA-DK-A3X1-01 8 110456939 110456939 C T PKHD1L1 Missense_Mutation p.S1614L 0.13 tolerated(0.18) benign(0.003) TCGA-DK-A3X1-01 8 110492237 110492237 G A PKHD1L1 Missense_Mutation p.D3066N 0.28 tolerated(0.1) probably_damaging(0.989) TCGA-DK-A3X1-01 8 116426229 116426229 A G TRPS1 3'UTR 0.31 TCGA-DK-A3X1-01 8 121259858 121259858 C T COL14A1 Missense_Mutation p.S829F 0.09 deleterious(0.04) benign(0.089) TCGA-DK-A3X1-01 8 124153062 124153062 G A TBC1D31 Missense_Mutation p.R854K 0.15 tolerated(0.06) benign(0.011) TCGA-DK-A3X1-01 8 124516888 124516888 C G FBXO32 Missense_Mutation p.D312H 0.16 deleterious(0) probably_damaging(0.916) TCGA-DK-A3X1-01 8 12946138 12946138 G A DLC1 Missense_Mutation p.R1384C 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A3X1-01 8 143823808 143823808 C T SLURP1 5'UTR 0.27 TCGA-DK-A3X1-01 8 144620768 144620768 G C ZC3H3 Missense_Mutation p.P257A 0.24 tolerated(1) benign(0) TCGA-DK-A3X1-01 8 144810168 144810168 T C FAM83H Missense_Mutation p.D488G 0.36 deleterious(0.01) possibly_damaging(0.759) TCGA-DK-A3X1-01 8 144897387 144897387 G A SCRIB Silent p.P52P 0.45 TCGA-DK-A3X1-01 8 144993918 144993918 G A PLEC Silent p.L3494L 0.29 TCGA-DK-A3X1-01 8 145059118 145059118 G C PARP10 Missense_Mutation p.S351W 0.10 tolerated(0.19) benign(0.214) TCGA-DK-A3X1-01 8 145625827 145625827 C T CPSF1 Silent p.Q249Q 0.07 TCGA-DK-A3X1-01 8 145690189 145690189 C T CYHR1 Intron 0.21 TCGA-DK-A3X1-01 8 145729780 145729780 G A GPT Silent p.R31R 0.21 TCGA-DK-A3X1-01 8 145739392 145739392 C T RECQL4 Missense_Mutation p.E660K 0.55 tolerated(0.08) benign(0.033) TCGA-DK-A3X1-01 8 20110394 20110394 C A LZTS1 Nonsense_Mutation p.E350* 0.28 TCGA-DK-A3X1-01 8 21927731 21927731 G A DMTN Missense_Mutation p.E164K 0.12 deleterious(0.04) benign(0.063) TCGA-DK-A3X1-01 8 22069410 22069410 G T BMP1 3'UTR 0.50 TCGA-DK-A3X1-01 8 22267600 22267600 C G SLC39A14 Missense_Mutation p.S200C 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 8 38370103 38370103 G C C8orf86 Silent p.L158L 0.15 TCGA-DK-A3X1-01 8 40532405 40532405 G A ZMAT4 Missense_Mutation p.P132L 0.29 tolerated(0.1) possibly_damaging(0.656) TCGA-DK-A3X1-01 8 42977680 42977680 C T POMK Missense_Mutation p.S238F 0.19 deleterious(0.03) benign(0.336) TCGA-DK-A3X1-01 8 52321993 52321993 C T PXDNL Missense_Mutation p.D731N 0.19 deleterious(0) probably_damaging(0.918) TCGA-DK-A3X1-01 8 53062372 53062372 G A ST18 Nonsense_Mutation p.Q658* 0.18 TCGA-DK-A3X1-01 8 77618762 77618762 C G ZFHX4 Silent p.L813L 0.14 TCGA-DK-A3X1-01 8 77620217 77620217 C G ZFHX4 Missense_Mutation p.N1009K 0.16 possibly_damaging(0.607) TCGA-DK-A3X1-01 8 86035736 86035736 G A LRRCC1 Missense_Mutation p.R340K 0.11 tolerated(0.82) benign(0.003) TCGA-DK-A3X1-01 8 8749873 8749873 G A MFHAS1 Silent p.L232L 0.27 TCGA-DK-A3X1-01 8 91055005 91055005 C T DECR1 Nonsense_Mutation p.Q239* 0.09 TCGA-DK-A3X1-01 8 95782795 95782795 G C DPY19L4 Missense_Mutation p.E484Q 0.17 tolerated(0.23) probably_damaging(0.957) TCGA-DK-A3X1-01 8 95902660 95902660 G C CCNE2 Missense_Mutation p.L146V 0.35 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X1-01 8 99440523 99440523 G A KCNS2 Missense_Mutation p.E106K 0.18 deleterious(0) probably_damaging(0.993) TCGA-DK-A3X1-01 9 100071729 100071729 A C CCDC180 Missense_Mutation p.K79Q 0.16 tolerated(0.07) benign(0.19) TCGA-DK-A3X1-01 9 100963836 100963836 G A TBC1D2 Silent p.L794L 0.17 TCGA-DK-A3X1-01 9 104356723 104356723 C T PPP3R2 Missense_Mutation p.E164K 0.11 tolerated(0.06) benign(0.012) TCGA-DK-A3X1-01 9 104433061 104433061 C G GRIN3A Missense_Mutation p.D545H 0.23 deleterious(0) possibly_damaging(0.768) TCGA-DK-A3X1-01 9 105767661 105767661 G A CYLC2 Missense_Mutation p.D250N 0.12 tolerated(0.18) unknown(0) TCGA-DK-A3X1-01 9 107288606 107288606 G A OR13C4 Silent p.I295I 0.14 TCGA-DK-A3X1-01 9 107564394 107564394 G C ABCA1 Missense_Mutation p.P1547A 0.17 tolerated(0.3) benign(0.003) TCGA-DK-A3X1-01 9 111798489 111798489 G A TMEM245 Missense_Mutation p.S799L 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-DK-A3X1-01 9 112020527 112020527 C G EPB41L4B Missense_Mutation p.E228Q 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A3X1-01 9 112705701 112705701 T C PALM2 Missense_Mutation p.M411T 0.17 deleterious(0) probably_damaging(0.918) TCGA-DK-A3X1-01 9 116136283 116136283 C G HDHD3 Missense_Mutation p.E118Q 0.20 tolerated(0.26) benign(0.146) TCGA-DK-A3X1-01 9 117826296 117826296 G A TNC Missense_Mutation p.A1180V 0.22 deleterious(0.01) possibly_damaging(0.648) TCGA-DK-A3X1-01 9 123182069 123182069 G C CDK5RAP2 Missense_Mutation p.Q1392E 0.13 deleterious(0.04) benign(0.006) TCGA-DK-A3X1-01 9 124519389 124519389 G C DAB2IP Missense_Mutation p.E126Q 0.21 deleterious(0.03) possibly_damaging(0.707) TCGA-DK-A3X1-01 9 130705511 130705511 G C FAM102A Missense_Mutation p.S372C 0.14 deleterious(0.04) possibly_damaging(0.797) TCGA-DK-A3X1-01 9 130742444 130742444 G T FAM102A 5'UTR 0.16 TCGA-DK-A3X1-01 9 131497667 131497667 G C ZER1 Missense_Mutation p.P696A 0.12 tolerated(0.06) probably_damaging(0.994) TCGA-DK-A3X1-01 9 134381829 134381829 G C POMT1 Missense_Mutation p.R90T 0.19 tolerated(0.08) possibly_damaging(0.7) TCGA-DK-A3X1-01 9 135940563 135940563 C T CEL Silent p.V162V 0.18 TCGA-DK-A3X1-01 9 135947125 135947125 C T CEL Nonsense_Mutation p.Q749* 0.11 TCGA-DK-A3X1-01 9 136324273 136324273 C T ADAMTS13 Nonsense_Mutation p.Q1419* 0.30 TCGA-DK-A3X1-01 9 137704502 137704502 G A COL5A1 Missense_Mutation p.D1266N 0.43 unknown(0) TCGA-DK-A3X1-01 9 139090634 139090634 C T LHX3 Silent p.K218K 0.21 TCGA-DK-A3X1-01 9 139836636 139836636 C G FBXW5 Missense_Mutation p.E320Q 0.44 tolerated(0.06) possibly_damaging(0.752) TCGA-DK-A3X1-01 9 139982608 139982608 T A MAN1B1 Missense_Mutation p.Y101N 0.12 deleterious(0.03) possibly_damaging(0.655) TCGA-DK-A3X1-01 9 18657715 18657715 G C ADAMTSL1 Missense_Mutation p.D305H 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A3X1-01 9 21974792 21974792 G T CDKN2A Nonsense_Mutation p.S12* 0.37 TCGA-DK-A3X1-01 9 32421006 32421006 C T ACO1 Silent p.I317I 0.23 TCGA-DK-A3X1-01 9 34647665 34647665 C T GALT Missense_Mutation p.H114Y 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-DK-A3X1-01 9 34971533 34971533 G A KIAA1045 Missense_Mutation p.E80K 0.22 tolerated(0.1) probably_damaging(0.997) TCGA-DK-A3X1-01 9 35811936 35811936 G A SPAG8 Missense_Mutation p.S36L 0.21 deleterious_low_confidence(0.04) unknown(0) TCGA-DK-A3X1-01 9 6595073 6595073 G A GLDC Missense_Mutation p.S401F 0.20 deleterious(0) possibly_damaging(0.748) TCGA-DK-A3X1-01 9 70918850 70918850 G C FOXD4L3 Missense_Mutation p.R328T 0.15 deleterious_low_confidence(0.01) benign(0.04) TCGA-DK-A3X1-01 9 713026 713026 G A KANK1 Missense_Mutation p.V754M 0.51 deleterious(0.05) possibly_damaging(0.718) TCGA-DK-A3X1-01 9 71866215 71866215 G A TJP2 Missense_Mutation p.E1117K 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 9 75516112 75516112 C G ALDH1A1 3'UTR 0.24 TCGA-DK-A3X1-01 9 8484313 8484313 G A PTPRD Silent p.V1073V 0.44 TCGA-DK-A3X1-01 9 86586977 86586977 C G HNRNPK Missense_Mutation p.R258T 0.10 deleterious(0.05) possibly_damaging(0.511) TCGA-DK-A3X1-01 9 86905100 86905100 C T SLC28A3 Missense_Mutation p.G373E 0.17 deleterious(0) probably_damaging(0.994) TCGA-DK-A3X1-01 9 90252913 90252913 G A DAPK1 Missense_Mutation p.E114K 0.37 tolerated(0.12) benign(0.118) TCGA-DK-A3X1-01 9 95062233 95062233 C T NOL8 Missense_Mutation p.D1081N 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-DK-A3X1-01 9 95618484 95618484 C G ZNF484 Missense_Mutation p.L46F 0.12 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X1-01 X 102885010 102885010 G A TCEAL1 Missense_Mutation p.E56K 0.24 tolerated_low_confidence(0.14) benign(0.025) TCGA-DK-A3X1-01 X 103359457 103359457 G T ZCCHC18 Nonsense_Mutation p.E219* 0.11 TCGA-DK-A3X1-01 X 111019659 111019659 G A TRPC5 Missense_Mutation p.S935L 0.10 tolerated_low_confidence(0.3) possibly_damaging(0.879) TCGA-DK-A3X1-01 X 111698393 111698393 C G ZCCHC16 Missense_Mutation p.P146R 0.11 tolerated(0.24) benign(0.04) TCGA-DK-A3X1-01 X 117576550 117576550 C G WDR44 Missense_Mutation p.S764C 0.32 deleterious(0.02) probably_damaging(1) TCGA-DK-A3X1-01 X 117679988 117679988 C T DOCK11 Missense_Mutation p.S156L 0.24 tolerated(0.08) benign(0.164) TCGA-DK-A3X1-01 X 117761530 117761530 G A DOCK11 Missense_Mutation p.D1218N 0.11 tolerated(0.32) benign(0.047) TCGA-DK-A3X1-01 X 119387705 119387705 G A ZBTB33 Silent p.K145K 0.15 TCGA-DK-A3X1-01 X 119495999 119495999 C T ATP1B4 5'UTR 0.17 TCGA-DK-A3X1-01 X 120009116 120009116 G A CT47B1 Missense_Mutation p.H137Y 0.14 tolerated(0.66) possibly_damaging(0.647) TCGA-DK-A3X1-01 X 123179197 123179197 C A STAG2 Silent p.R216R 0.38 TCGA-DK-A3X1-01 X 125299590 125299590 C A DCAF12L2 Silent p.L106L 0.09 TCGA-DK-A3X1-01 X 129053376 129053376 G A UTP14A Silent p.K221K 0.35 TCGA-DK-A3X1-01 X 13635940 13635940 G T EGFL6 Missense_Mutation p.M290I 0.36 tolerated(0.28) benign(0.009) TCGA-DK-A3X1-01 X 147919173 147919173 G A AFF2 Silent p.E363E 0.09 TCGA-DK-A3X1-01 X 148571931 148571931 A G IDS Missense_Mutation p.L96S 0.18 deleterious(0) benign(0.371) TCGA-DK-A3X1-01 X 148798565 148798565 C T MAGEA11 3'UTR 0.19 TCGA-DK-A3X1-01 X 149867721 149867721 C T MTMR1 Missense_Mutation p.S67F 0.17 deleterious(0) benign(0.365) TCGA-DK-A3X1-01 X 153205672 153205672 C T RENBP Missense_Mutation p.M320I 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-DK-A3X1-01 X 153207433 153207433 G T RENBP Missense_Mutation p.P247T 0.32 deleterious(0.03) benign(0.12) TCGA-DK-A3X1-01 X 155232650 155232650 C T IL9R Silent p.V36V 0.09 TCGA-DK-A3X1-01 X 15591524 15591524 G A ACE2 Silent p.L503L 0.27 TCGA-DK-A3X1-01 X 17080621 17080621 C T REPS2 Missense_Mutation p.A392V 0.23 tolerated(0.48) benign(0.002) TCGA-DK-A3X1-01 X 18913260 18913260 C T PHKA2 Missense_Mutation p.R1111Q 0.26 tolerated(0.69) benign(0.001) TCGA-DK-A3X1-01 X 24086216 24086216 G A EIF2S3 Missense_Mutation p.G335S 0.27 deleterious(0.05) possibly_damaging(0.641) TCGA-DK-A3X1-01 X 2942120 2942120 C A ARSH Missense_Mutation p.F320L 0.19 tolerated(0.09) possibly_damaging(0.775) TCGA-DK-A3X1-01 X 3002382 3002382 C G ARSF Missense_Mutation p.L169V 0.35 tolerated(0.15) possibly_damaging(0.855) TCGA-DK-A3X1-01 X 30873150 30873150 C G TAB3 Missense_Mutation p.R211T 0.33 tolerated(0.83) probably_damaging(0.983) TCGA-DK-A3X1-01 X 3530357 3530357 C T PRKX Missense_Mutation p.V321M 0.14 deleterious(0.01) benign(0.199) TCGA-DK-A3X1-01 X 40460059 40460059 G C ATP6AP2 Missense_Mutation p.E262Q 0.21 tolerated(0.09) probably_damaging(1) TCGA-DK-A3X1-01 X 41010204 41010204 G C USP9X Missense_Mutation p.D553H 0.20 deleterious(0) probably_damaging(0.986) TCGA-DK-A3X1-01 X 47270104 47270104 G A ZNF157 Missense_Mutation p.M75I 0.36 tolerated(0.13) benign(0.014) TCGA-DK-A3X1-01 X 47307918 47307918 C T ZNF41 Silent p.G417G 0.11 TCGA-DK-A3X1-01 X 48340027 48340027 C T FTSJ1 Silent p.F193F 0.27 TCGA-DK-A3X1-01 X 48837884 48837884 C T GRIPAP1 Missense_Mutation p.E592K 0.12 probably_damaging(0.972) TCGA-DK-A3X1-01 X 48837885 48837885 C A GRIPAP1 Splice_Site p.X592_splice 0.12 TCGA-DK-A3X1-01 X 48933303 48933303 G C WDR45 Nonsense_Mutation p.S210* 0.45 TCGA-DK-A3X1-01 X 55172594 55172594 G A FAM104B Missense_Mutation p.L92F 0.18 deleterious(0.03) benign(0.102) TCGA-DK-A3X1-01 X 57620058 57620058 C A ZXDB Missense_Mutation p.S526Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-DK-A3X1-01 X 69521860 69521860 G A KIF4A Silent p.S209S 0.06 TCGA-DK-A3X1-01 X 69646312 69646312 C T GDPD2 Missense_Mutation p.S152L 0.44 tolerated(0.07) possibly_damaging(0.677) TCGA-DK-A3X1-01 X 70360539 70360539 G A MED12 Missense_Mutation p.M2033I 0.20 benign(0.01) TCGA-DK-A3X1-01 X 73042163 73042163 C T XIST RNA 0.10 TCGA-DK-A3X1-01 X 77244136 77244136 G A ATP7A Silent p.L173L 0.17 TCGA-DK-A3X1-01 X 77395158 77395158 G C TAF9B 5'UTR 0.16 TCGA-DK-A3X1-01 X 78616609 78616609 C G ITM2A Missense_Mutation p.E257Q 0.30 deleterious(0.02) possibly_damaging(0.607) TCGA-DK-A3X1-01 X 79932201 79932201 C G BRWD3 Missense_Mutation p.E1772D 0.16 tolerated_low_confidence(0.53) unknown(0) TCGA-DK-A3X1-01 X 83127893 83127893 G A CYLC1 Splice_Site p.X60_splice 0.19 TCGA-DK-A3X2-01 10 123274768 123274768 C G FGFR2 Missense_Mutation p.G385R 0.06 deleterious(0) possibly_damaging(0.895) TCGA-DK-A3X2-01 10 25887393 25887393 A C GPR158 Silent p.S946S 0.35 TCGA-DK-A3X2-01 10 29710597 29710597 G A PTCHD3P1 RNA 0.22 TCGA-DK-A3X2-01 10 45869865 45869865 C G ALOX5 Missense_Mutation p.F46L 0.33 tolerated(0.1) benign(0.1) TCGA-DK-A3X2-01 10 49459621 49459621 C G FRMPD2 Missense_Mutation p.D47H 0.32 tolerated(0.06) probably_damaging(1) TCGA-DK-A3X2-01 10 72192792 72192792 G C NODAL Missense_Mutation p.P315R 0.07 deleterious(0) probably_damaging(1) TCGA-DK-A3X2-01 10 88754630 88754630 G A RP11-96C23.14 RNA 0.39 TCGA-DK-A3X2-01 11 126081421 126081421 G C RPUSD4 Missense_Mutation p.S38C 0.25 deleterious(0) possibly_damaging(0.873) TCGA-DK-A3X2-01 11 134095110 134095110 G - VPS26B Frame_Shift_Del p.K33Rfs*18 0.23 TCGA-DK-A3X2-01 11 55655616 55655616 G A TRIM51 Missense_Mutation p.E206K 0.06 tolerated(1) benign(0.012) TCGA-DK-A3X2-01 11 57314091 57314091 C A SMTNL1 Silent p.R454R 0.44 TCGA-DK-A3X2-01 11 64855423 64855423 G A ZFPL1 Missense_Mutation p.R257Q 0.18 tolerated(0.31) benign(0.007) TCGA-DK-A3X2-01 11 67059632 67059632 C T ANKRD13D Missense_Mutation p.R238C 0.49 deleterious(0) probably_damaging(0.931) TCGA-DK-A3X2-01 12 112616995 112616995 C G HECTD4 Missense_Mutation p.E3586Q 0.26 possibly_damaging(0.86) TCGA-DK-A3X2-01 12 123950433 123950433 G T SNRNP35 Missense_Mutation p.V121F 0.27 tolerated(0.35) benign(0.025) TCGA-DK-A3X2-01 12 1953673 1953673 C T CACNA2D4 Missense_Mutation p.E789K 0.21 tolerated(1) benign(0.001) TCGA-DK-A3X2-01 12 21445142 21445142 G A SLCO1A2 Silent p.F522F 0.73 TCGA-DK-A3X2-01 12 44913946 44913946 C G NELL2 Missense_Mutation p.E798Q 0.36 deleterious(0.02) possibly_damaging(0.674) TCGA-DK-A3X2-01 12 57677620 57677620 C G R3HDM2 Missense_Mutation p.R372S 0.22 deleterious(0.02) benign(0.437) TCGA-DK-A3X2-01 13 110434736 110434736 G A IRS2 Missense_Mutation p.P1222L 0.35 deleterious_low_confidence(0.01) benign(0.017) TCGA-DK-A3X2-01 13 113768274 113768274 C T F7 Missense_Mutation p.H144Y 0.79 tolerated(1) benign(0.002) TCGA-DK-A3X2-01 13 48941669 48941670 AA - RB1 Frame_Shift_Del p.N328* 0.62 TCGA-DK-A3X2-01 14 105353391 105353391 G A CEP170B Missense_Mutation p.G939R 0.96 tolerated(0.26) benign(0.271) TCGA-DK-A3X2-01 14 69257168 69257169 - C ZFP36L1 Frame_Shift_Ins p.C34Lfs*41 0.53 TCGA-DK-A3X2-01 15 29346936 29346936 G A APBA2 Silent p.S283S 0.16 TCGA-DK-A3X2-01 15 42458791 42458791 C T VPS39 Missense_Mutation p.E526K 0.32 deleterious(0.02) benign(0.15) TCGA-DK-A3X2-01 15 45814527 45814527 C G SLC30A4 Missense_Mutation p.R9P 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.693) TCGA-DK-A3X2-01 15 45983248 45983248 C T SQRDL 3'UTR 0.30 TCGA-DK-A3X2-01 15 50152544 50152544 G T ATP8B4 Silent p.I1142I 0.36 TCGA-DK-A3X2-01 15 83876080 83876080 C G HDGFRP3 Intron 0.25 TCGA-DK-A3X2-01 15 89761812 89761812 C T RLBP1 Missense_Mutation p.R42H 0.26 tolerated(0.12) benign(0.105) TCGA-DK-A3X2-01 16 31288244 31288244 G A ITGAM Missense_Mutation p.G363S 0.48 deleterious(0) probably_damaging(0.973) TCGA-DK-A3X2-01 16 3781305 3781305 G A CREBBP Missense_Mutation p.S1687F 0.35 unknown(0) TCGA-DK-A3X2-01 16 48175149 48175149 T G ABCC12 Missense_Mutation p.I131L 0.40 tolerated(0.16) benign(0.01) TCGA-DK-A3X2-01 16 69373640 69373640 A G NIP7 5'UTR 0.28 TCGA-DK-A3X2-01 16 82131831 82131831 C T HSD17B2 Silent p.F318F 0.50 TCGA-DK-A3X2-01 17 1840005 1840005 C T RTN4RL1 Missense_Mutation p.G371R 0.43 tolerated(0.55) benign(0.006) TCGA-DK-A3X2-01 17 32483404 32483404 C T ASIC2 Missense_Mutation p.V50M 0.44 deleterious(0.03) benign(0.017) TCGA-DK-A3X2-01 17 40317675 40317675 G A KCNH4 Missense_Mutation p.P626L 0.25 tolerated(0.6) benign(0.002) TCGA-DK-A3X2-01 17 40491346 40491346 G A STAT3 Missense_Mutation p.R152W 0.44 deleterious(0) probably_damaging(0.932) TCGA-DK-A3X2-01 17 40695147 40695147 C T NAGLU Missense_Mutation p.R375C 0.40 tolerated(0.16) possibly_damaging(0.849) TCGA-DK-A3X2-01 17 43227201 43227203 AGG - HEXIM1 In_Frame_Del p.E217del 0.24 TCGA-DK-A3X2-01 17 61601691 61601691 G C KCNH6 Missense_Mutation p.E90Q 0.12 tolerated(0.07) benign(0.056) TCGA-DK-A3X2-01 17 66913585 66913585 T A ABCA8 Missense_Mutation p.K645N 0.17 deleterious(0) possibly_damaging(0.594) TCGA-DK-A3X2-01 17 74003232 74003232 G A EVPL Silent p.Y2018Y 0.52 TCGA-DK-A3X2-01 17 7572828 7572828 C T TP53 3'UTR 0.96 TCGA-DK-A3X2-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.93 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X2-01 17 76539979 76539979 G A DNAH17 Missense_Mutation p.A831V 0.43 benign(0.002) TCGA-DK-A3X2-01 17 7722541 7722541 C T DNAH2 Silent p.C3610C 0.98 TCGA-DK-A3X2-01 17 78317761 78317761 C T RNF213 Silent p.I2096I 0.18 TCGA-DK-A3X2-01 17 8137937 8137937 G A CTC1 Silent p.L552L 0.15 TCGA-DK-A3X2-01 18 3100157 3100157 T G MYOM1 Missense_Mutation p.T1243P 0.38 tolerated(0.05) benign(0.214) TCGA-DK-A3X2-01 18 76755318 76755318 G A SALL3 Silent p.T1109T 0.27 TCGA-DK-A3X2-01 19 12783894 12783894 G A WDR83 Missense_Mutation p.R216Q 0.18 deleterious(0) probably_damaging(0.912) TCGA-DK-A3X2-01 19 17598009 17598009 G T SLC27A1 Missense_Mutation p.G197W 0.26 deleterious(0.01) probably_damaging(0.968) TCGA-DK-A3X2-01 19 17992962 17992962 C G SLC5A5 Silent p.L392L 0.26 TCGA-DK-A3X2-01 19 32844906 32844907 - A ZNF507 Frame_Shift_Ins p.G393Rfs*4 0.27 TCGA-DK-A3X2-01 19 33698341 33698341 G A LRP3 Missense_Mutation p.D725N 0.27 tolerated_low_confidence(0.46) benign(0.083) TCGA-DK-A3X2-01 19 41518655 41518655 C T CYP2B6 Missense_Mutation p.P410L 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-DK-A3X2-01 19 42507489 42507489 C T GRIK5 Missense_Mutation p.E837K 0.67 deleterious(0.02) benign(0.034) TCGA-DK-A3X2-01 19 43576025 43576025 T C PSG2 Missense_Mutation p.N264S 0.34 tolerated(0.51) benign(0.033) TCGA-DK-A3X2-01 19 49303479 49303479 G A BCAT2 Missense_Mutation p.R126W 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A3X2-01 19 52394762 52394762 G A ZNF649 Silent p.S209S 0.06 TCGA-DK-A3X2-01 19 53057652 53057652 A T ZNF808 Missense_Mutation p.R495W 0.61 tolerated(0.19) possibly_damaging(0.811) TCGA-DK-A3X2-01 19 7626461 7626461 G A PNPLA6 3'UTR 0.46 TCGA-DK-A3X2-01 1 152082781 152082781 T C TCHH Missense_Mutation p.E971G 0.27 unknown(0) TCGA-DK-A3X2-01 1 152733220 152733220 C T KPRP Missense_Mutation p.R386W 0.05 deleterious_low_confidence(0.05) benign(0.033) TCGA-DK-A3X2-01 1 158943534 158943534 A G PYHIN1 Missense_Mutation p.N486S 0.28 benign(0.292) TCGA-DK-A3X2-01 1 160261931 160261931 G A COPA Silent p.L1015L 0.20 TCGA-DK-A3X2-01 1 167095767 167095767 C T DUSP27 Missense_Mutation p.R467C 0.10 deleterious(0) benign(0.035) TCGA-DK-A3X2-01 1 175365806 175365806 G A TNR Missense_Mutation p.R372W 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X2-01 1 196967342 196967342 A G CFHR5 Missense_Mutation p.N352S 0.19 tolerated(0.13) benign(0.004) TCGA-DK-A3X2-01 1 208224414 208224415 - T PLXNA2 Frame_Shift_Ins p.N1065Kfs*24 0.17 TCGA-DK-A3X2-01 1 22310796 22310796 C A CELA3B Missense_Mutation p.A205D 0.09 deleterious(0) probably_damaging(0.993) TCGA-DK-A3X2-01 1 227947044 227947044 G A SNAP47 Silent p.L327L 0.28 TCGA-DK-A3X2-01 1 228509627 228509627 G A OBSCN Missense_Mutation p.E5986K 0.27 probably_damaging(0.922) TCGA-DK-A3X2-01 1 237754216 237754216 G A RYR2 Missense_Mutation p.D1362N 0.23 benign(0.015) TCGA-DK-A3X2-01 1 245027590 245027590 T C HNRNPU Missense_Mutation p.N7S 0.21 deleterious(0.01) possibly_damaging(0.678) TCGA-DK-A3X2-01 1 246795198 246795198 A G CNST Missense_Mutation p.I196M 0.69 deleterious(0.03) benign(0.409) TCGA-DK-A3X2-01 1 248512571 248512571 C T OR14C36 Silent p.P165P 0.31 TCGA-DK-A3X2-01 1 27087942 27087961 ATCAAGCATTGCCCAAGATC - ARID1A Frame_Shift_Del p.S744Rfs*66 0.17 TCGA-DK-A3X2-01 1 27177621 27177621 G A ZDHHC18 Missense_Mutation p.V279M 0.12 deleterious(0.01) benign(0.418) TCGA-DK-A3X2-01 1 33059276 33059276 G C ZBTB8A Missense_Mutation p.Q248H 0.19 benign(0.015) TCGA-DK-A3X2-01 1 6169989 6169989 G A CHD5 Missense_Mutation p.T1815M 0.62 deleterious(0.02) possibly_damaging(0.77) TCGA-DK-A3X2-01 1 91406718 91406719 - T ZNF644 Frame_Shift_Ins p.S65Ifs*6 0.14 TCGA-DK-A3X2-01 20 33587684 33587684 A G MYH7B Missense_Mutation p.K1628E 0.16 benign(0.133) TCGA-DK-A3X2-01 20 37650573 37650573 C A DHX35 Missense_Mutation p.H530N 0.42 tolerated(0.46) benign(0) TCGA-DK-A3X2-01 20 60902023 60902023 C T LAMA5 Splice_Site p.X1705_splice 0.20 TCGA-DK-A3X2-01 21 22910211 22910211 C A NCAM2 Missense_Mutation p.P816Q 0.17 deleterious(0) possibly_damaging(0.461) TCGA-DK-A3X2-01 21 47690462 47690462 G A MCM3AP Silent p.F827F 0.26 TCGA-DK-A3X2-01 22 46930684 46930684 G A CELSR1 Missense_Mutation p.T795I 0.08 deleterious(0) probably_damaging(0.944) TCGA-DK-A3X2-01 2 120128374 120128374 G C DBI Silent p.L123L 0.50 TCGA-DK-A3X2-01 2 1499950 1499950 G A TPO Nonsense_Mutation p.W732* 0.17 TCGA-DK-A3X2-01 2 168103929 168103929 A G XIRP2 Silent p.L2009L 0.07 TCGA-DK-A3X2-01 2 168107930 168107930 G A XIRP2 Missense_Mutation p.G3343D 0.05 benign(0.027) TCGA-DK-A3X2-01 2 173354269 173354269 G A ITGA6 Silent p.Q854Q 0.26 TCGA-DK-A3X2-01 2 219292738 219292738 C T VIL1 Missense_Mutation p.S133F 0.04 tolerated(0.28) benign(0.014) TCGA-DK-A3X2-01 2 85554728 85554728 G A TGOLN2 Missense_Mutation p.H43Y 0.27 tolerated(0.71) benign(0.001) TCGA-DK-A3X2-01 3 15467891 15467891 T C METTL6 Missense_Mutation p.K43R 0.15 tolerated(0.29) benign(0.011) TCGA-DK-A3X2-01 3 186370288 186370288 G T FETUB Silent p.L339L 0.07 TCGA-DK-A3X2-01 3 38294388 38294388 A G OXSR1 3'UTR 0.36 TCGA-DK-A3X2-01 3 52439898 52439898 G A BAP1 Nonsense_Mutation p.Q272* 0.35 TCGA-DK-A3X2-01 3 52441219 52441219 T G BAP1 Missense_Mutation p.D184A 0.46 deleterious(0) probably_damaging(0.989) TCGA-DK-A3X2-01 4 113568893 113568893 G A LARP7 Missense_Mutation p.D356N 0.37 deleterious(0) possibly_damaging(0.798) TCGA-DK-A3X2-01 4 113575243 113575243 T C LARP7 Silent p.Y539Y 0.72 TCGA-DK-A3X2-01 4 121957684 121957684 T G NDNF Missense_Mutation p.Y481S 0.59 deleterious(0) probably_damaging(0.994) TCGA-DK-A3X2-01 4 134071656 134071656 T A PCDH10 Missense_Mutation p.S121T 0.35 tolerated(0.23) benign(0.066) TCGA-DK-A3X2-01 4 2661737 2661737 G A FAM193A Silent p.Q276Q 0.35 TCGA-DK-A3X2-01 4 54967816 54967816 C G GSX2 Silent p.L214L 0.24 TCGA-DK-A3X2-01 4 54968055 54968055 C G GSX2 Nonsense_Mutation p.S294* 0.22 TCGA-DK-A3X2-01 4 71508536 71508536 G T ENAM Nonsense_Mutation p.E465* 0.44 TCGA-DK-A3X2-01 4 73957450 73957450 T G ANKRD17 Missense_Mutation p.L1965F 0.20 benign(0) TCGA-DK-A3X2-01 4 8235217 8235217 G A SH3TC1 Missense_Mutation p.E1087K 1.00 deleterious(0) probably_damaging(0.948) TCGA-DK-A3X2-01 5 13914697 13914697 C T DNAH5 Missense_Mutation p.A418T 0.31 possibly_damaging(0.798) TCGA-DK-A3X2-01 5 140180995 140180995 C A PCDHA3 Missense_Mutation p.H71Q 0.60 deleterious_low_confidence(0.05) benign(0.409) TCGA-DK-A3X2-01 5 140180999 140180999 G A PCDHA3 Missense_Mutation p.D73N 0.60 deleterious_low_confidence(0.02) possibly_damaging(0.591) TCGA-DK-A3X2-01 5 140615850 140615850 T A PCDHB18 RNA 0.21 TCGA-DK-A3X2-01 5 171583660 171583660 G C STK10 Missense_Mutation p.L97V 0.60 deleterious(0) benign(0.071) TCGA-DK-A3X2-01 5 178413349 178413349 C T GRM6 Missense_Mutation p.A636T 0.56 tolerated(0.22) benign(0.015) TCGA-DK-A3X2-01 5 70798507 70798507 G C BDP1 Missense_Mutation p.K710N 0.59 deleterious(0) benign(0.275) TCGA-DK-A3X2-01 5 72798326 72798326 G C BTF3 Missense_Mutation p.R72T 0.17 deleterious(0) possibly_damaging(0.887) TCGA-DK-A3X2-01 6 133789711 133789711 C G EYA4 Missense_Mutation p.P271R 0.07 deleterious(0) possibly_damaging(0.739) TCGA-DK-A3X2-01 6 155577589 155577589 C T TIAM2 Intron 1.00 TCGA-DK-A3X2-01 6 155578045 155578045 C G TIAM2 Missense_Mutation p.F1632L 0.39 deleterious_low_confidence(0.02) probably_damaging(0.913) TCGA-DK-A3X2-01 6 26197305 26197305 C G HIST1H3D Silent p.S58S 0.10 TCGA-DK-A3X2-01 6 33165668 33165668 G A RXRB Missense_Mutation p.R231C 0.88 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X2-01 6 34059662 34059662 T A GRM4 Missense_Mutation p.D245V 0.95 tolerated(0.22) possibly_damaging(0.609) TCGA-DK-A3X2-01 6 74073406 74073406 G A KHDC3L Silent p.S159S 0.92 TCGA-DK-A3X2-01 6 87966739 87966746 AAATGCAG - ZNF292 Frame_Shift_Del p.K1131Tfs*4 0.94 TCGA-DK-A3X2-01 7 103004746 103004746 G A PSMC2 Missense_Mutation p.V250I 0.26 tolerated(1) probably_damaging(0.997) TCGA-DK-A3X2-01 7 110763690 110763690 G C LRRN3 Missense_Mutation p.E288Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-A3X2-01 7 120387973 120387973 G A KCND2 3'UTR 0.20 TCGA-DK-A3X2-01 7 121651507 121651507 G A PTPRZ1 Missense_Mutation p.V803I 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DK-A3X2-01 7 1478593 1478593 C T MICALL2 Missense_Mutation p.V669I 0.26 tolerated(0.64) benign(0.01) TCGA-DK-A3X2-01 7 150416178 150416178 G A GIMAP1 Missense_Mutation p.G15S 0.43 tolerated(0.09) benign(0.346) TCGA-DK-A3X2-01 7 151802370 151802370 C A GALNT11 Nonsense_Mutation p.Y209* 0.44 TCGA-DK-A3X2-01 7 156476745 156476745 G A LMBR1 3'UTR 0.19 TCGA-DK-A3X2-01 7 30963453 30963453 G A AQP1 3'UTR 0.40 TCGA-DK-A3X2-01 7 42005321 42005321 G A GLI3 Missense_Mutation p.P1117L 0.23 tolerated(0.41) benign(0.001) TCGA-DK-A3X2-01 7 51096483 51096483 G C COBL Missense_Mutation p.F770L 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-DK-A3X2-01 7 6026490 6026490 C T PMS2 Missense_Mutation p.A636T 0.07 tolerated(0.4) benign(0.063) TCGA-DK-A3X2-01 7 6426883 6426883 A G RAC1 Missense_Mutation p.N26D 0.40 tolerated(0.08) possibly_damaging(0.494) TCGA-DK-A3X2-01 7 76062891 76062891 G A ZP3 Missense_Mutation p.V214M 0.32 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X2-01 8 10623284 10623284 G A PINX1 Missense_Mutation p.T205M 0.55 deleterious(0.02) possibly_damaging(0.874) TCGA-DK-A3X2-01 8 110100327 110100327 T G TRHR Missense_Mutation p.F196V 0.05 deleterious(0) probably_damaging(0.943) TCGA-DK-A3X2-01 8 11614473 11614473 G T GATA4 Missense_Mutation p.A343S 0.32 tolerated(1) benign(0.001) TCGA-DK-A3X2-01 8 119122833 119122833 C A EXT1 Silent p.A151A 0.31 TCGA-DK-A3X2-01 8 141745510 141745510 G C PTK2 Missense_Mutation p.Q624E 0.08 deleterious(0) possibly_damaging(0.564) TCGA-DK-A3X2-01 8 144523269 144523269 G A ZC3H3 Silent p.L777L 0.26 TCGA-DK-A3X2-01 8 26218598 26218598 G A PPP2R2A Missense_Mutation p.E200K 0.17 deleterious(0.03) possibly_damaging(0.898) TCGA-DK-A3X2-01 8 87410627 87410627 C G WWP1 Missense_Mutation p.Q131E 0.30 tolerated(0.99) benign(0.218) TCGA-DK-A3X2-01 9 134351583 134351583 G A PRRC2B Missense_Mutation p.R1356H 0.08 tolerated(0.49) benign(0.009) TCGA-DK-A3X2-01 9 17466740 17466740 G A CNTLN Missense_Mutation p.E1236K 0.95 deleterious(0.01) possibly_damaging(0.886) TCGA-DK-A3X2-01 9 17466835 17466835 G A CNTLN Silent p.Q1267Q 0.99 TCGA-DK-A3X2-01 9 35725306 35725306 C T TLN1 Missense_Mutation p.G48E 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A3X2-01 9 97355853 97355853 G A FBP2 Silent p.A52A 0.96 TCGA-DK-A3X2-01 X 123171389 123171390 GA - STAG2 Frame_Shift_Del p.D101Lfs*8 0.67 TCGA-DK-A3X2-01 X 12937240 12937240 A C TLR8 Missense_Mutation p.E27D 0.10 tolerated(0.33) benign(0.009) TCGA-DK-A3X2-01 X 149639179 149639179 C T MAMLD1 Missense_Mutation p.S420F 0.35 deleterious(0) probably_damaging(0.982) TCGA-DK-A3X2-01 X 229432 229432 C A GTPBP6 Splice_Site p.X77_splice 0.47 TCGA-DK-A3X2-01 X 34961690 34961690 C T FAM47B Missense_Mutation p.R248C 0.98 tolerated(0.13) benign(0.001) TCGA-DK-A3X2-01 X 9905313 9905313 G A SHROOM2 Missense_Mutation p.E1243K 0.90 tolerated(0.08) probably_damaging(0.956) TCGA-DK-A6AV-01 10 115486085 115486085 G C CASP7 Missense_Mutation p.D225H 0.35 deleterious(0) benign(0.349) TCGA-DK-A6AV-01 10 124896932 124896932 C T HMX3 Silent p.S253S 0.19 TCGA-DK-A6AV-01 10 17083159 17083159 G A CUBN Missense_Mutation p.P1297L 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A6AV-01 10 35322104 35322104 G A CUL2 Missense_Mutation p.A386V 0.22 deleterious(0) possibly_damaging(0.895) TCGA-DK-A6AV-01 10 55587268 55587268 C T PCDH15 Missense_Mutation p.A1418T 0.51 deleterious(0) benign(0.271) TCGA-DK-A6AV-01 10 85901274 85901274 G A GHITM Silent p.L6L 0.22 TCGA-DK-A6AV-01 10 88728242 88728242 C A ADIRF 5'UTR 0.17 TCGA-DK-A6AV-01 10 90332802 90332802 G A RNLS Silent p.F128F 0.46 TCGA-DK-A6AV-01 11 1084794 1084794 C T MUC2 Silent p.Y863Y 0.36 TCGA-DK-A6AV-01 11 113270315 113270315 G T ANKK1 Missense_Mutation p.A542S 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-DK-A6AV-01 11 17483150 17483150 C T ABCC8 Missense_Mutation p.E268K 0.30 tolerated(0.93) benign(0.001) TCGA-DK-A6AV-01 11 43465053 43465053 G A TTC17 Silent p.L810L 0.30 TCGA-DK-A6AV-01 11 57466376 57466376 G C ZDHHC5 Missense_Mutation p.E490Q 0.19 tolerated(0.38) benign(0.175) TCGA-DK-A6AV-01 11 64888673 64888673 C T FAU Intron 0.36 TCGA-DK-A6AV-01 11 66061853 66061853 C T TMEM151A Silent p.L46L 0.21 TCGA-DK-A6AV-01 11 66083455 66083455 G A CD248 Silent p.I348I 0.25 TCGA-DK-A6AV-01 11 66366724 66366724 C T CCS Nonsense_Mutation p.Q84* 0.28 TCGA-DK-A6AV-01 11 70319166 70319166 C A SHANK2 Missense_Mutation p.W1787C 0.24 deleterious(0) probably_damaging(0.926) TCGA-DK-A6AV-01 11 71806565 71806565 G A LRTOMT Intron 0.20 TCGA-DK-A6AV-01 11 73712421 73712421 C T UCP3 3'UTR 0.28 TCGA-DK-A6AV-01 11 7716909 7716909 T A OVCH2 Missense_Mutation p.I392F 0.50 deleterious(0) possibly_damaging(0.742) TCGA-DK-A6AV-01 12 117603295 117603295 C G FBXO21 Missense_Mutation p.E441Q 0.36 deleterious(0.03) benign(0.075) TCGA-DK-A6AV-01 12 118533598 118533598 C A VSIG10 Missense_Mutation p.G34V 0.17 deleterious(0.01) possibly_damaging(0.764) TCGA-DK-A6AV-01 12 119617367 119617367 G A HSPB8 Missense_Mutation p.E84K 0.38 tolerated(0.84) benign(0.021) TCGA-DK-A6AV-01 12 25261643 25261643 C A CASC1 Nonsense_Mutation p.E670* 0.28 TCGA-DK-A6AV-01 12 3040399 3040399 A T TULP3 Missense_Mutation p.N230I 0.19 deleterious(0) possibly_damaging(0.582) TCGA-DK-A6AV-01 12 45781981 45781981 A C ANO6 Silent p.A422A 0.13 TCGA-DK-A6AV-01 12 46245474 46245474 G T ARID2 Nonsense_Mutation p.G1190* 0.34 TCGA-DK-A6AV-01 12 49420213 49420213 C T KMT2D Missense_Mutation p.R5179H 0.42 unknown(0) TCGA-DK-A6AV-01 12 53012124 53012124 G A KRT73 Missense_Mutation p.A62V 0.17 tolerated(0.12) benign(0.007) TCGA-DK-A6AV-01 12 56384495 56384495 G T RAB5B Silent p.V115V 0.11 TCGA-DK-A6AV-01 12 56641954 56641954 G C ANKRD52 Missense_Mutation p.L611V 0.28 tolerated(0.55) benign(0.095) TCGA-DK-A6AV-01 12 56642650 56642650 G C ANKRD52 Missense_Mutation p.L533V 0.32 tolerated(0.32) benign(0.293) TCGA-DK-A6AV-01 12 57857795 57857795 G A GLI1 Silent p.P38P 0.41 TCGA-DK-A6AV-01 13 31495929 31495929 C A MEDAG Missense_Mutation p.P245T 0.07 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AV-01 13 60407256 60407256 G A DIAPH3 Silent p.F1004F 0.18 TCGA-DK-A6AV-01 13 77651312 77651312 G T MYCBP2 Missense_Mutation p.L3861M 0.17 probably_damaging(0.991) TCGA-DK-A6AV-01 14 53180686 53180686 G T PSMC6 Missense_Mutation p.G191C 0.24 deleterious(0) probably_damaging(1) TCGA-DK-A6AV-01 15 63481937 63481937 C G RAB8B Missense_Mutation p.I38M 0.22 deleterious(0) benign(0.033) TCGA-DK-A6AV-01 15 90623111 90623111 G A ZNF710 3'UTR 0.22 TCGA-DK-A6AV-01 15 99250815 99250815 G A IGF1R Missense_Mutation p.R40H 0.37 deleterious(0) probably_damaging(0.949) TCGA-DK-A6AV-01 16 21728332 21728332 T C OTOA Silent p.S531S 0.42 TCGA-DK-A6AV-01 16 30567415 30567415 C G ZNF764 Missense_Mutation p.K109N 0.47 deleterious(0.05) benign(0.037) TCGA-DK-A6AV-01 16 30569104 30569104 G A ZNF764 Missense_Mutation p.P87L 0.14 deleterious(0.04) benign(0.091) TCGA-DK-A6AV-01 16 597700 597700 G A CAPN15 Missense_Mutation p.E288K 0.15 deleterious(0.01) benign(0.359) TCGA-DK-A6AV-01 16 67578230 67578230 G A FAM65A Missense_Mutation p.E897K 0.38 deleterious(0.02) benign(0.292) TCGA-DK-A6AV-01 16 68712084 68712084 C G CDH3 Silent p.S98S 0.17 TCGA-DK-A6AV-01 16 68716312 68716312 C T CDH3 Silent p.I368I 0.20 TCGA-DK-A6AV-01 16 71675003 71675003 G C MARVELD3 3'UTR 0.19 TCGA-DK-A6AV-01 17 10401051 10401051 C T MYH1 Silent p.K1455K 0.44 TCGA-DK-A6AV-01 17 17127355 17127355 G C FLCN Missense_Mutation p.Q167E 0.31 deleterious(0.01) benign(0.365) TCGA-DK-A6AV-01 17 6023847 6023847 G T WSCD1 Missense_Mutation p.G532C 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AV-01 17 65989036 65989036 C T C17orf58 Intron 0.26 TCGA-DK-A6AV-01 17 7697620 7697620 G T DNAH2 Missense_Mutation p.V2540F 0.26 benign(0.278) TCGA-DK-A6AV-01 17 77811653 77811653 C A CBX4 Silent p.L54L 0.33 TCGA-DK-A6AV-01 17 79650122 79650122 C A ARL16 Missense_Mutation p.R76I 0.29 deleterious(0.01) possibly_damaging(0.886) TCGA-DK-A6AV-01 18 6870591 6870591 G T ARHGAP28 Missense_Mutation p.D113Y 0.57 deleterious(0.01) possibly_damaging(0.75) TCGA-DK-A6AV-01 18 9258746 9258746 A G ANKRD12 Silent p.P1827P 0.57 TCGA-DK-A6AV-01 19 10463184 10463184 A G TYK2 Missense_Mutation p.S1082P 0.25 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AV-01 19 17000712 17000712 G A F2RL3 Silent p.E146E 0.21 TCGA-DK-A6AV-01 19 2425967 2425967 C T TMPRSS9 Missense_Mutation p.R1021W 0.20 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AV-01 19 24310276 24310276 T C ZNF254 Missense_Mutation p.C492R 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A6AV-01 19 2834826 2834826 G A ZNF554 Silent p.Q531Q 0.19 TCGA-DK-A6AV-01 19 33608796 33608796 C G GPATCH1 Missense_Mutation p.F754L 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AV-01 19 3574458 3574458 G C HMG20B Silent p.T75T 0.27 TCGA-DK-A6AV-01 19 38934384 38934384 C G RYR1 Silent p.R124R 0.09 TCGA-DK-A6AV-01 19 38934386 38934386 C T RYR1 Missense_Mutation p.S125F 0.10 probably_damaging(0.99) TCGA-DK-A6AV-01 19 40902929 40902929 G T PRX Missense_Mutation p.L444I 0.23 tolerated(0.19) possibly_damaging(0.567) TCGA-DK-A6AV-01 19 41066062 41066062 C T SPTBN4 Intron 0.43 TCGA-DK-A6AV-01 19 41349849 41349849 C T CYP2A6 Missense_Mutation p.R446K 0.45 benign(0.044) TCGA-DK-A6AV-01 19 41381746 41381746 C T CYP2A7 Missense_Mutation p.R446K 0.22 tolerated(0.05) benign(0.183) TCGA-DK-A6AV-01 19 44981140 44981141 - T ZNF180 Frame_Shift_Ins p.P520Tfs*3 0.10 TCGA-DK-A6AV-01 19 46174547 46174547 C T GIPR Silent p.L59L 0.42 TCGA-DK-A6AV-01 19 49507641 49507641 C G RUVBL2 Silent p.G77G 0.10 TCGA-DK-A6AV-01 19 55396831 55396831 C T FCAR Silent p.F85F 0.38 TCGA-DK-A6AV-01 1 103444470 103444470 C T COL11A1 Splice_Site p.X886_splice 0.24 TCGA-DK-A6AV-01 1 109794480 109794480 G A CELSR2 Silent p.S593S 0.23 TCGA-DK-A6AV-01 1 111996976 111996976 C T ATP5F1 Missense_Mutation p.T74I 0.33 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AV-01 1 115453048 115453048 A G SYCP1 Missense_Mutation p.K451E 0.14 tolerated(0.11) benign(0.032) TCGA-DK-A6AV-01 1 166819657 166819657 A G POGK 3'UTR 0.09 TCGA-DK-A6AV-01 1 197070919 197070919 G C ASPM Missense_Mutation p.Q2488E 0.22 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AV-01 1 20249222 20249222 G C PLA2G2E Missense_Mutation p.Q23E 0.31 tolerated(0.1) possibly_damaging(0.78) TCGA-DK-A6AV-01 1 22846690 22846690 G A ZBTB40 Silent p.P990P 0.20 TCGA-DK-A6AV-01 1 26691587 26691587 G C ZNF683 Missense_Mutation p.F150L 0.27 tolerated(0.87) benign(0.006) TCGA-DK-A6AV-01 1 57394996 57394996 A G C8B 3'UTR 0.37 TCGA-DK-A6AV-01 1 90473225 90473225 G A ZNF326 Silent p.T177T 0.11 TCGA-DK-A6AV-01 20 31629802 31629802 C T BPIFB6 Missense_Mutation p.S390L 0.39 deleterious(0) probably_damaging(0.975) TCGA-DK-A6AV-01 20 6022425 6022425 G A LRRN4 Missense_Mutation p.S489L 0.31 tolerated(0.15) benign(0.003) TCGA-DK-A6AV-01 22 21363438 21363438 T A AC002472.1 5'Flank 0.11 TCGA-DK-A6AV-01 22 30136682 30136682 G A ZMAT5 Silent p.H76H 0.20 TCGA-DK-A6AV-01 22 37915099 37915099 G A CARD10 Missense_Mutation p.R37W 0.50 deleterious(0.02) possibly_damaging(0.882) TCGA-DK-A6AV-01 22 39134945 39134945 G A SUN2 Missense_Mutation p.T592M 0.38 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AV-01 2 175427243 175427243 C G WIPF1 3'UTR 0.38 TCGA-DK-A6AV-01 2 17888586 17888586 C - SMC6 Frame_Shift_Del p.A636Lfs*25 0.30 TCGA-DK-A6AV-01 2 203397424 203397424 G A BMPR2 Silent p.E415E 0.60 TCGA-DK-A6AV-01 2 21234850 21234850 G C APOB Missense_Mutation p.I1630M 0.45 probably_damaging(0.994) TCGA-DK-A6AV-01 2 213872106 213872106 C T IKZF2 Missense_Mutation p.R520Q 0.67 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AV-01 2 73717128 73717128 C G ALMS1 Nonsense_Mutation p.S2680* 0.42 TCGA-DK-A6AV-01 2 74719339 74719339 C T TTC31 Silent p.L334L 0.46 TCGA-DK-A6AV-01 2 9515008 9515008 G T ASAP2 Nonsense_Mutation p.G561* 0.17 TCGA-DK-A6AV-01 3 101232026 101232026 T A SENP7 5'UTR 0.10 TCGA-DK-A6AV-01 3 118942988 118942988 C T B4GALT4 Silent p.L197L 0.12 TCGA-DK-A6AV-01 3 126180431 126180431 G A ZXDC Nonsense_Mutation p.Q692* 0.16 TCGA-DK-A6AV-01 3 133118990 133118990 G A BFSP2 Silent p.Q21Q 0.33 TCGA-DK-A6AV-01 3 142222229 142222229 G C ATR Missense_Mutation p.Q1755E 0.36 tolerated(0.15) possibly_damaging(0.798) TCGA-DK-A6AV-01 3 148459501 148459501 G T AGTR1 Nonsense_Mutation p.E227* 0.56 TCGA-DK-A6AV-01 3 148545858 148545858 G A CPB1 Silent p.T47T 0.30 TCGA-DK-A6AV-01 3 32932056 32932056 C T TRIM71 Nonsense_Mutation p.Q454* 0.28 TCGA-DK-A6AV-01 3 39108242 39108242 C T WDR48 Silent p.Y119Y 0.14 TCGA-DK-A6AV-01 3 39374771 39374772 - AAAGT CCR8 Frame_Shift_Ins p.C319Kfs*10 0.08 TCGA-DK-A6AV-01 3 41279525 41279525 G C CTNNB1 Missense_Mutation p.D699H 0.28 tolerated_low_confidence(0.21) possibly_damaging(0.497) TCGA-DK-A6AV-01 3 52443754 52443754 A C BAP1 Missense_Mutation p.F15V 0.55 deleterious(0) probably_damaging(0.965) TCGA-DK-A6AV-01 3 58139211 58139211 C T FLNB Silent p.P2190P 0.26 TCGA-DK-A6AV-01 3 9476091 9476091 C G SETD5 Missense_Mutation p.S84C 0.32 deleterious(0) possibly_damaging(0.885) TCGA-DK-A6AV-01 4 119252873 119252873 G A PRSS12 Silent p.L323L 0.12 TCGA-DK-A6AV-01 4 155312369 155312369 A G DCHS2 Silent p.D27D 0.22 TCGA-DK-A6AV-01 4 187534320 187534320 C G FAT1 Missense_Mutation p.E3136Q 0.33 benign(0.395) TCGA-DK-A6AV-01 4 25014018 25014018 G T LGI2 Missense_Mutation p.N253K 0.16 tolerated(0.96) benign(0.266) TCGA-DK-A6AV-01 4 57181706 57181706 G A KIAA1211 Missense_Mutation p.E680K 0.43 deleterious(0) possibly_damaging(0.486) TCGA-DK-A6AV-01 4 57220348 57220348 C G AASDH Missense_Mutation p.D414H 0.49 deleterious(0) probably_damaging(0.926) TCGA-DK-A6AV-01 4 57220371 57220371 C T AASDH Missense_Mutation p.R406K 0.45 tolerated(0.64) benign(0.006) TCGA-DK-A6AV-01 5 140188482 140188482 G T PCDHA4 Silent p.A570A 0.21 TCGA-DK-A6AV-01 5 140257235 140257235 G A PCDHA12 Silent p.P726P 0.47 TCGA-DK-A6AV-01 5 140712241 140712241 G A PCDHGA1 Missense_Mutation p.V664M 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.473) TCGA-DK-A6AV-01 5 179201095 179201095 C G MAML1 Silent p.L756L 0.50 TCGA-DK-A6AV-01 5 33462217 33462217 G T TARS Missense_Mutation p.D615Y 0.23 deleterious(0) probably_damaging(0.91) TCGA-DK-A6AV-01 5 37379634 37379634 C T WDR70 Silent p.V23V 0.34 TCGA-DK-A6AV-01 5 54696133 54696133 G A SKIV2L2 Missense_Mutation p.G789R 0.26 tolerated(0.21) benign(0.008) TCGA-DK-A6AV-01 6 144074983 144074983 G A PHACTR2 Missense_Mutation p.E130K 0.46 tolerated(0.11) probably_damaging(0.978) TCGA-DK-A6AV-01 6 161054931 161054931 C G LPA Missense_Mutation p.Q363H 0.12 deleterious(0.01) benign(0.249) TCGA-DK-A6AV-01 6 163984777 163984777 A G QKI Intron 0.13 TCGA-DK-A6AV-01 6 42583757 42583757 C T UBR2 Missense_Mutation p.H371Y 0.14 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AV-01 6 43250570 43250570 C T TTBK1 Missense_Mutation p.R698W 0.32 possibly_damaging(0.8) TCGA-DK-A6AV-01 6 43416711 43416711 C A ABCC10 Missense_Mutation p.A1351D 0.30 tolerated(0.32) possibly_damaging(0.661) TCGA-DK-A6AV-01 6 56472567 56472567 G C DST Intron 0.39 TCGA-DK-A6AV-01 7 106898789 106898789 G A COG5 Missense_Mutation p.L570F 0.18 tolerated(0.05) possibly_damaging(0.5) TCGA-DK-A6AV-01 7 107674701 107674701 A G LAMB4 Silent p.I1590I 0.10 TCGA-DK-A6AV-01 7 107706869 107706869 C T LAMB4 Missense_Mutation p.E875K 0.48 tolerated(0.5) benign(0.16) TCGA-DK-A6AV-01 7 122809278 122809278 G A SLC13A1 Silent p.I159I 0.17 TCGA-DK-A6AV-01 7 131870141 131870141 C G PLXNA4 Missense_Mutation p.R1025S 0.10 deleterious(0.04) benign(0.111) TCGA-DK-A6AV-01 7 150845919 150845919 C A GBX1 Missense_Mutation p.K283N 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AV-01 7 158695103 158695103 G A WDR60 Missense_Mutation p.D392N 0.20 tolerated(0.18) possibly_damaging(0.811) TCGA-DK-A6AV-01 7 17349573 17349573 C A AHR Missense_Mutation p.P27T 0.12 deleterious(0.01) probably_damaging(0.917) TCGA-DK-A6AV-01 7 17349574 17349574 C A AHR Missense_Mutation p.P27Q 0.13 tolerated(0.06) benign(0.411) TCGA-DK-A6AV-01 7 23224788 23224789 AT - NUPL2 Frame_Shift_Del p.D74Afs*10 0.22 TCGA-DK-A6AV-01 7 28996238 28996238 C T AC005013.5 5'Flank 0.41 TCGA-DK-A6AV-01 7 34889304 34889304 C T NPSR1 Intron 0.45 TCGA-DK-A6AV-01 7 99704526 99704526 G A AP4M1 3'UTR 0.30 TCGA-DK-A6AV-01 8 113348998 113348998 T C CSMD3 Missense_Mutation p.D2301G 0.32 tolerated(0.1) benign(0.439) TCGA-DK-A6AV-01 8 55537771 55537771 G C RP1 Missense_Mutation p.K443N 0.18 deleterious(0) possibly_damaging(0.86) TCGA-DK-A6AV-01 8 8197114 8197114 C G SGK223 Missense_Mutation p.E732Q 0.46 probably_damaging(0.986) TCGA-DK-A6AV-01 9 139743800 139743800 G A PHPT1 5'UTR 0.52 TCGA-DK-A6AV-01 9 2717947 2717947 G A KCNV2 Missense_Mutation p.D70N 0.36 tolerated_low_confidence(0.13) benign(0.001) TCGA-DK-A6AV-01 9 33351645 33351646 - A NFX1 Frame_Shift_Ins p.R839Efs*12 0.38 TCGA-DK-A6AV-01 9 34381060 34381060 C T C9orf24 Missense_Mutation p.R181Q 0.46 tolerated(0.15) probably_damaging(0.964) TCGA-DK-A6AV-01 X 107930872 107930872 C G COL4A5 Silent p.G1492G 0.25 TCGA-DK-A6AV-01 X 140995228 140995228 G A MAGEC1 Missense_Mutation p.E680K 0.30 deleterious_low_confidence(0.01) benign(0.292) TCGA-DK-A6AV-01 X 146312318 146312318 T C MIR506 RNA 0.53 TCGA-DK-A6AV-01 X 14862694 14862702 CTTCCCGGT - FANCB In_Frame_Del p.R696_G698del 0.17 TCGA-DK-A6AV-01 X 149895705 149895705 T A MTMR1 Missense_Mutation p.I116N 0.34 deleterious(0) possibly_damaging(0.723) TCGA-DK-A6AV-01 X 1752143 1752143 C A ASMT Missense_Mutation p.H249Q 0.17 tolerated(0.13) possibly_damaging(0.666) TCGA-DK-A6AV-01 X 31227734 31227734 C T DMD Silent p.L3148L 0.41 TCGA-DK-A6AV-01 X 48922603 48922603 C T CCDC120 Missense_Mutation p.S219L 0.30 tolerated(0.34) probably_damaging(0.997) TCGA-DK-A6AV-01 X 49645630 49645630 C T USP27X Silent p.F240F 0.45 TCGA-DK-A6AV-01 X 51488485 51488485 C A GSPT2 Missense_Mutation p.T588K 0.34 deleterious(0) probably_damaging(0.942) TCGA-DK-A6AV-01 X 69649385 69649385 C T GDPD2 Nonsense_Mutation p.Q327* 0.23 TCGA-DK-A6AV-01 X 70341528 70341528 T C MED12 Silent p.S321S 0.28 TCGA-DK-A6AV-01 X 83351237 83351237 C T RPS6KA6 Missense_Mutation p.G646S 0.28 tolerated(0.22) benign(0.148) TCGA-DK-A6AW-01 10 101606808 101606808 G T ABCC2 Missense_Mutation p.A1413S 0.41 tolerated(0.77) benign(0.124) TCGA-DK-A6AW-01 10 101657854 101657854 C T DNMBP Missense_Mutation p.R970Q 0.27 deleterious(0) possibly_damaging(0.872) TCGA-DK-A6AW-01 10 101964407 101964407 G A CHUK Missense_Mutation p.L455F 0.61 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 10 102987462 102987462 G T LBX1 Silent p.I137I 0.39 TCGA-DK-A6AW-01 10 103543034 103543034 G T NPM3 Missense_Mutation p.F38L 0.41 tolerated(1) benign(0.003) TCGA-DK-A6AW-01 10 104103841 104103841 G A GBF1 Missense_Mutation p.R66Q 0.42 tolerated(0.51) benign(0.383) TCGA-DK-A6AW-01 10 104173861 104173861 G A PSD Silent p.F406F 0.41 TCGA-DK-A6AW-01 10 105179351 105179351 G T PDCD11 Missense_Mutation p.K721N 0.41 deleterious(0.01) benign(0.076) TCGA-DK-A6AW-01 10 105350119 105350119 G A NEURL1 Missense_Mutation p.R572H 0.36 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 10 105921768 105921768 T C WDR96 Missense_Mutation p.D1122G 0.43 deleterious(0) probably_damaging(0.986) TCGA-DK-A6AW-01 10 106022782 106022782 G T GSTO1 Missense_Mutation p.D138Y 0.55 deleterious(0) possibly_damaging(0.712) TCGA-DK-A6AW-01 10 106152090 106152090 A C CCDC147 Missense_Mutation p.N489H 0.35 deleterious(0.02) benign(0.165) TCGA-DK-A6AW-01 10 106159203 106159203 G A CCDC147 Missense_Mutation p.R587Q 0.42 tolerated(0.17) benign(0.006) TCGA-DK-A6AW-01 10 1061799 1061799 G A GTPBP4 Missense_Mutation p.R572Q 0.42 tolerated(0.16) benign(0.009) TCGA-DK-A6AW-01 10 106209891 106209891 G A CCDC147 Silent p.E813E 0.44 TCGA-DK-A6AW-01 10 106737173 106737173 G A SORCS3 Silent p.R292R 0.54 TCGA-DK-A6AW-01 10 112645013 112645013 G T PDCD4 Missense_Mutation p.E148D 0.43 tolerated(0.5) benign(0.011) TCGA-DK-A6AW-01 10 113913351 113913351 C T GPAM Missense_Mutation p.R815Q 0.36 deleterious(0.04) possibly_damaging(0.59) TCGA-DK-A6AW-01 10 114043548 114043548 C T TECTB Missense_Mutation p.S19L 0.62 deleterious(0.01) benign(0.183) TCGA-DK-A6AW-01 10 114045915 114045915 C T TECTB Silent p.S118S 0.50 TCGA-DK-A6AW-01 10 114220336 114220336 G A VTI1A Missense_Mutation p.E50K 0.23 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 10 115355398 115355398 G A NRAP Missense_Mutation p.A1507V 0.52 deleterious(0.02) possibly_damaging(0.647) TCGA-DK-A6AW-01 10 115922908 115922908 A G C10orf118 Silent p.N40N 0.49 TCGA-DK-A6AW-01 10 116197663 116197663 G T ABLIM1 Silent p.L721L 0.39 TCGA-DK-A6AW-01 10 11789407 11789407 C A ECHDC3 Missense_Mutation p.S77Y 0.22 deleterious(0.02) possibly_damaging(0.507) TCGA-DK-A6AW-01 10 118202577 118202577 C T PNLIPRP3 Missense_Mutation p.A72V 0.38 deleterious(0.03) benign(0.005) TCGA-DK-A6AW-01 10 118310642 118310642 C A PNLIP Silent p.I119I 0.34 TCGA-DK-A6AW-01 10 118350645 118350645 C T PNLIPRP1 Silent p.L2L 0.44 TCGA-DK-A6AW-01 10 118394392 118394392 C T PNLIPRP2 Silent p.F286F 0.40 TCGA-DK-A6AW-01 10 118891967 118891967 C A VAX1 3'Flank 0.48 TCGA-DK-A6AW-01 10 120803574 120803574 C T EIF3A Silent p.P913P 0.37 TCGA-DK-A6AW-01 10 121214601 121214601 C T GRK5 3'UTR 0.50 TCGA-DK-A6AW-01 10 121586797 121586797 G A INPP5F Silent p.Q968Q 0.53 TCGA-DK-A6AW-01 10 121658029 121658029 A G SEC23IP Missense_Mutation p.Q85R 0.45 deleterious(0.03) possibly_damaging(0.552) TCGA-DK-A6AW-01 10 121692598 121692598 G A SEC23IP Missense_Mutation p.R947Q 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 10 123844286 123844286 G A TACC2 Silent p.T757T 0.48 TCGA-DK-A6AW-01 10 124013649 124013649 G A TACC2 3'UTR 0.46 TCGA-DK-A6AW-01 10 124753249 124753249 C A IKZF5 3'UTR 0.52 TCGA-DK-A6AW-01 10 124896740 124896740 C T HMX3 Silent p.G189G 0.40 TCGA-DK-A6AW-01 10 125780879 125780879 C T CHST15 Missense_Mutation p.D414N 0.52 deleterious(0.01) possibly_damaging(0.59) TCGA-DK-A6AW-01 10 126205772 126205772 C A LHPP Silent p.I216I 0.39 TCGA-DK-A6AW-01 10 126631490 126631490 G T ZRANB1 Missense_Mutation p.R143I 0.41 tolerated(0.1) benign(0.062) TCGA-DK-A6AW-01 10 126672126 126672126 G A ZRANB1 Missense_Mutation p.E593K 0.48 deleterious(0) probably_damaging(0.984) TCGA-DK-A6AW-01 10 126673497 126673497 G A ZRANB1 Missense_Mutation p.R688Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 10 126691536 126691536 G A CTBP2 Silent p.G657G 0.51 TCGA-DK-A6AW-01 10 127459066 127459066 G A MMP21 Silent p.F358F 0.05 TCGA-DK-A6AW-01 10 127525423 127525423 A C DHX32 Missense_Mutation p.F689V 0.57 deleterious(0.04) probably_damaging(0.957) TCGA-DK-A6AW-01 10 127527689 127527689 G A DHX32 Nonsense_Mutation p.R588* 0.46 TCGA-DK-A6AW-01 10 128114386 128114386 G A C10orf90 3'UTR 0.48 TCGA-DK-A6AW-01 10 128209915 128209915 T G C10orf90 5'UTR 0.58 TCGA-DK-A6AW-01 10 129350805 129350805 C A NPS Missense_Mutation p.L58I 0.52 deleterious(0.01) probably_damaging(0.923) TCGA-DK-A6AW-01 10 129691094 129691094 C A CLRN3 5'UTR 0.26 TCGA-DK-A6AW-01 10 129902530 129902530 A C MKI67 Missense_Mutation p.F2525C 0.44 tolerated(0.15) probably_damaging(0.979) TCGA-DK-A6AW-01 10 129903222 129903222 T G MKI67 Silent p.G2294G 0.53 TCGA-DK-A6AW-01 10 129905633 129905633 T C MKI67 Missense_Mutation p.K1491E 0.46 deleterious(0.04) possibly_damaging(0.46) TCGA-DK-A6AW-01 10 129906102 129906102 T G MKI67 Missense_Mutation p.Q1334H 0.44 tolerated(0.05) benign(0.003) TCGA-DK-A6AW-01 10 129906132 129906132 C A MKI67 Missense_Mutation p.E1324D 0.42 tolerated(0.33) benign(0.193) TCGA-DK-A6AW-01 10 13160939 13160939 C T OPTN Silent p.F226F 0.52 TCGA-DK-A6AW-01 10 131676068 131676068 C A EBF3 Missense_Mutation p.K200N 0.45 deleterious(0) possibly_damaging(0.475) TCGA-DK-A6AW-01 10 134646941 134646941 G A TTC40 Silent p.F2346F 0.48 TCGA-DK-A6AW-01 10 13483638 13483638 T C BEND7 Intron 0.62 TCGA-DK-A6AW-01 10 134940809 134940809 C T GPR123 Silent p.Y158Y 0.27 TCGA-DK-A6AW-01 10 135020850 135020850 C A KNDC1 Nonsense_Mutation p.Y1263* 0.40 TCGA-DK-A6AW-01 10 13647673 13647673 T G PRPF18 Missense_Mutation p.F98V 0.47 deleterious(0) probably_damaging(0.954) TCGA-DK-A6AW-01 10 14894457 14894457 A C HSPA14 Missense_Mutation p.N221H 0.42 tolerated(0.16) possibly_damaging(0.819) TCGA-DK-A6AW-01 10 14923574 14923574 C T SUV39H2 Missense_Mutation p.S36L 0.41 tolerated(0.19) benign(0.001) TCGA-DK-A6AW-01 10 15138339 15138339 G T C10orf111 3'UTR 0.59 TCGA-DK-A6AW-01 10 15655712 15655712 G T ITGA8 Silent p.I500I 0.44 TCGA-DK-A6AW-01 10 16996405 16996405 C T CUBN Missense_Mutation p.R1613Q 0.45 tolerated(0.16) benign(0.087) TCGA-DK-A6AW-01 10 17171181 17171181 C A CUBN Missense_Mutation p.R64I 0.45 deleterious(0) probably_damaging(0.914) TCGA-DK-A6AW-01 10 17199564 17199564 C T TRDMT1 Missense_Mutation p.D255N 0.43 tolerated(0.1) benign(0.017) TCGA-DK-A6AW-01 10 17362816 17362816 G A ST8SIA6 3'UTR 0.39 TCGA-DK-A6AW-01 10 17363213 17363213 G A ST8SIA6 Silent p.L287L 0.48 TCGA-DK-A6AW-01 10 17645599 17645599 C A PTPLA Missense_Mutation p.R148I 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 10 17865153 17865153 G A MRC1L1 Missense_Mutation p.A48T 0.43 benign(0.002) TCGA-DK-A6AW-01 10 18266918 18266918 A G SLC39A12 Missense_Mutation p.N280S 0.36 tolerated(0.93) benign(0.001) TCGA-DK-A6AW-01 10 18280180 18280180 G A SLC39A12 Missense_Mutation p.G457E 0.36 deleterious(0.03) possibly_damaging(0.521) TCGA-DK-A6AW-01 10 18834884 18834884 A C NSUN6 Missense_Mutation p.F463C 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 10 18957482 18957482 C T ARL5B Missense_Mutation p.T44I 0.31 deleterious(0.01) possibly_damaging(0.54) TCGA-DK-A6AW-01 10 21098812 21098812 C T NEBL Missense_Mutation p.R845H 0.46 deleterious(0) probably_damaging(0.991) TCGA-DK-A6AW-01 10 21129775 21129775 C A NEBL Nonsense_Mutation p.E411* 0.44 TCGA-DK-A6AW-01 10 21414799 21414799 C A C10orf113 Nonsense_Mutation p.E141* 0.45 TCGA-DK-A6AW-01 10 23257234 23257234 G T ARMC3 Splice_Site p.X245_splice 0.37 TCGA-DK-A6AW-01 10 23297819 23297819 T C ARMC3 Silent p.N668N 0.47 TCGA-DK-A6AW-01 10 23326238 23326238 C T ARMC3 Missense_Mutation p.R817C 0.45 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 10 24834129 24834129 T G KIAA1217 Intron 0.44 TCGA-DK-A6AW-01 10 24889679 24889679 G A ARHGAP21 Nonsense_Mutation p.R1010* 0.31 TCGA-DK-A6AW-01 10 24959170 24959170 A G ARHGAP21 Missense_Mutation p.S74P 0.49 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 10 25464703 25464703 G A GPR158 Silent p.A118A 0.40 TCGA-DK-A6AW-01 10 25888232 25888232 G A GPR158 3'UTR 0.57 TCGA-DK-A6AW-01 10 26446395 26446395 C T MYO3A Nonsense_Mutation p.R984* 0.44 TCGA-DK-A6AW-01 10 27112207 27112207 C T ABI1 Missense_Mutation p.E49K 0.37 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 10 27512345 27512345 C A ACBD5 Nonsense_Mutation p.E138* 0.43 TCGA-DK-A6AW-01 10 27687192 27687192 G A PTCHD3 3'UTR 0.62 TCGA-DK-A6AW-01 10 27702465 27702465 G A PTCHD3 Silent p.L239L 0.45 TCGA-DK-A6AW-01 10 28971077 28971077 G A BAMBI Missense_Mutation p.R177Q 0.43 deleterious(0.02) probably_damaging(0.983) TCGA-DK-A6AW-01 10 30604918 30604918 C T MTPAP Missense_Mutation p.D454N 0.53 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 10 30728107 30728107 T C MAP3K8 Silent p.T80T 0.52 TCGA-DK-A6AW-01 10 31133716 31133716 G A ZNF438 3'UTR 0.40 TCGA-DK-A6AW-01 10 31810404 31810404 G A ZEB1 Missense_Mutation p.R715K 0.50 tolerated(1) benign(0.004) TCGA-DK-A6AW-01 10 34648122 34648122 C A PARD3 Nonsense_Mutation p.G674* 0.46 TCGA-DK-A6AW-01 10 34688322 34688322 C A PARD3 Nonsense_Mutation p.E276* 0.45 TCGA-DK-A6AW-01 10 35897090 35897090 G T GJD4 Missense_Mutation p.V217F 0.42 deleterious(0.01) possibly_damaging(0.801) TCGA-DK-A6AW-01 10 35929105 35929105 G A FZD8 Missense_Mutation p.S418L 0.40 deleterious(0) probably_damaging(0.971) TCGA-DK-A6AW-01 10 38145394 38145394 C T ZNF248 5'UTR 0.53 TCGA-DK-A6AW-01 10 3824300 3824300 G A KLF6 Missense_Mutation p.A70V 0.42 deleterious(0.04) probably_damaging(0.97) TCGA-DK-A6AW-01 10 38344796 38344796 G T ZNF33A Nonsense_Mutation p.E582* 0.44 TCGA-DK-A6AW-01 10 43292034 43292034 G T BMS1 Missense_Mutation p.D448Y 0.39 deleterious(0.04) benign(0.305) TCGA-DK-A6AW-01 10 44873705 44873705 C A AL137026.1 Missense_Mutation p.L7I 0.50 possibly_damaging(0.578) TCGA-DK-A6AW-01 10 46135371 46135371 C A ZFAND4 Nonsense_Mutation p.E204* 0.42 TCGA-DK-A6AW-01 10 48429206 48429206 G T GDF10 Missense_Mutation p.S227Y 0.66 tolerated(1) benign(0.424) TCGA-DK-A6AW-01 10 5046020 5046020 G A AKR1C2 Missense_Mutation p.S3L 0.51 tolerated_low_confidence(0.78) benign(0) TCGA-DK-A6AW-01 10 50598196 50598196 T G DRGX Missense_Mutation p.T78P 0.57 deleterious(0) probably_damaging(0.978) TCGA-DK-A6AW-01 10 51770067 51770067 C T AGAP6 3'UTR 0.34 TCGA-DK-A6AW-01 10 51890679 51890679 G A FAM21A Missense_Mutation p.E1243K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A6AW-01 10 5204861 5204861 G A AKR1CL1 Silent p.I72I 0.49 TCGA-DK-A6AW-01 10 54076460 54076460 G T DKK1 Nonsense_Mutation p.E232* 0.38 TCGA-DK-A6AW-01 10 5541496 5541496 C A CALML5 5'UTR 0.40 TCGA-DK-A6AW-01 10 55591192 55591192 C T PCDH15 Missense_Mutation p.S1362N 0.47 tolerated(0.19) benign(0.027) TCGA-DK-A6AW-01 10 56089420 56089420 A G PCDH15 Missense_Mutation p.I214T 0.43 deleterious(0) possibly_damaging(0.72) TCGA-DK-A6AW-01 10 59976042 59976042 A C IPMK Missense_Mutation p.F137C 0.54 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 10 61414086 61414086 C T SLC16A9 Missense_Mutation p.S233N 0.36 tolerated(0.45) benign(0.003) TCGA-DK-A6AW-01 10 6157548 6157548 C T RBM17 3'UTR 0.41 TCGA-DK-A6AW-01 10 61832853 61832853 G A ANK3 Missense_Mutation p.R2596C 0.44 probably_damaging(0.985) TCGA-DK-A6AW-01 10 61847919 61847919 G A ANK3 Nonsense_Mutation p.R1176* 0.34 TCGA-DK-A6AW-01 10 6263484 6263484 C T PFKFB3 Silent p.I324I 0.50 TCGA-DK-A6AW-01 10 63817047 63817047 G T ARID5B Nonsense_Mutation p.E340* 0.40 TCGA-DK-A6AW-01 10 6472834 6472834 G A PRKCQ Missense_Mutation p.R635W 0.47 tolerated(0.05) possibly_damaging(0.472) TCGA-DK-A6AW-01 10 65354541 65354541 C T REEP3 Nonsense_Mutation p.R37* 0.33 TCGA-DK-A6AW-01 10 68535270 68535270 C T CTNNA3 Missense_Mutation p.E354K 0.38 deleterious(0.03) possibly_damaging(0.468) TCGA-DK-A6AW-01 10 68687591 68687591 A G LRRTM3 Missense_Mutation p.D306G 0.44 deleterious(0.01) benign(0.145) TCGA-DK-A6AW-01 10 68936696 68936696 T G CTNNA3 Intron 0.33 TCGA-DK-A6AW-01 10 69366618 69366618 C A CTNNA3 Nonsense_Mutation p.E97* 0.43 TCGA-DK-A6AW-01 10 69785433 69785433 C A HERC4 Nonsense_Mutation p.E260* 0.57 TCGA-DK-A6AW-01 10 69804295 69804295 T G HERC4 Missense_Mutation p.Q84H 0.43 tolerated(0.47) benign(0.319) TCGA-DK-A6AW-01 10 69926378 69926378 C A MYPN Missense_Mutation p.S643Y 0.37 tolerated(0.07) possibly_damaging(0.73) TCGA-DK-A6AW-01 10 69934018 69934018 G A MYPN Silent p.P723P 0.48 TCGA-DK-A6AW-01 10 70048385 70048385 C A PBLD Missense_Mutation p.E182D 0.39 tolerated(0.42) benign(0.03) TCGA-DK-A6AW-01 10 70099301 70099301 G A HNRNPH3 Missense_Mutation p.D210N 0.33 deleterious(0) possibly_damaging(0.753) TCGA-DK-A6AW-01 10 70406337 70406337 C A TET1 Missense_Mutation p.S1284Y 0.39 deleterious(0) possibly_damaging(0.907) TCGA-DK-A6AW-01 10 70644902 70644902 G T STOX1 Missense_Mutation p.E450D 0.42 tolerated(0.16) benign(0.015) TCGA-DK-A6AW-01 10 70731689 70731689 G A DDX21 Missense_Mutation p.E477K 0.47 deleterious(0) probably_damaging(0.991) TCGA-DK-A6AW-01 10 70928304 70928304 G T VPS26A Missense_Mutation p.D263Y 0.41 deleterious(0) probably_damaging(0.988) TCGA-DK-A6AW-01 10 70980173 70980173 G T HKDC1 5'UTR 0.38 TCGA-DK-A6AW-01 10 70992596 70992596 G A HKDC1 Silent p.G101G 0.35 TCGA-DK-A6AW-01 10 71139679 71139679 G A HK1 Missense_Mutation p.D369N 0.40 tolerated(0.21) benign(0.031) TCGA-DK-A6AW-01 10 71142248 71142248 C T HK1 Missense_Mutation p.S428F 0.38 deleterious(0.05) probably_damaging(0.974) TCGA-DK-A6AW-01 10 72179789 72179789 G T EIF4EBP2 Nonsense_Mutation p.E89* 0.47 TCGA-DK-A6AW-01 10 73051428 73051428 C T UNC5B Missense_Mutation p.P512S 0.41 tolerated(0.17) possibly_damaging(0.881) TCGA-DK-A6AW-01 10 73056446 73056446 C T UNC5B Missense_Mutation p.R813W 0.43 tolerated(0.29) probably_damaging(0.999) TCGA-DK-A6AW-01 10 7325916 7325916 C T SFMBT2 Missense_Mutation p.R241Q 0.45 deleterious(0.04) benign(0.288) TCGA-DK-A6AW-01 10 73472564 73472564 C A C10orf105 3'UTR 0.43 TCGA-DK-A6AW-01 10 73537647 73537647 G A C10orf54 5'Flank 0.36 TCGA-DK-A6AW-01 10 73856895 73856895 C T ASCC1 3'UTR 0.54 TCGA-DK-A6AW-01 10 74326502 74326502 G T MICU1 Missense_Mutation p.S17Y 0.63 deleterious_low_confidence(0.01) benign(0.281) TCGA-DK-A6AW-01 10 75056799 75056799 C T TTC18 Splice_Site p.X618_splice 0.45 TCGA-DK-A6AW-01 10 75113412 75113412 G T TTC18 Missense_Mutation p.S51Y 0.48 tolerated(0.36) benign(0.408) TCGA-DK-A6AW-01 10 75230850 75230850 G A PPP3CB Nonsense_Mutation p.R263* 0.43 TCGA-DK-A6AW-01 10 75289664 75289664 C A USP54 Nonsense_Mutation p.E612* 0.49 TCGA-DK-A6AW-01 10 75290150 75290150 T C USP54 Missense_Mutation p.N527D 0.47 tolerated(0.09) benign(0.101) TCGA-DK-A6AW-01 10 75442512 75442512 G A AGAP5 Missense_Mutation p.S146L 0.44 tolerated_low_confidence(0.35) benign(0) TCGA-DK-A6AW-01 10 75529199 75529199 G A SEC24C Missense_Mutation p.R840Q 0.53 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 10 76602941 76602941 A C KAT6B Missense_Mutation p.K109T 0.43 possibly_damaging(0.785) TCGA-DK-A6AW-01 10 78868281 78868281 C T KCNMA1 Missense_Mutation p.R394H 0.41 tolerated(0.09) probably_damaging(0.996) TCGA-DK-A6AW-01 10 78868297 78868297 C A KCNMA1 Nonsense_Mutation p.E389* 0.44 TCGA-DK-A6AW-01 10 79777455 79777455 G A POLR3A Nonsense_Mutation p.R437* 0.50 TCGA-DK-A6AW-01 10 81061875 81061875 C T ZMIZ1 Silent p.F677F 0.45 TCGA-DK-A6AW-01 10 81680809 81680809 C T MBL1P RNA 0.40 TCGA-DK-A6AW-01 10 81930615 81930615 C T ANXA11 Missense_Mutation p.G38R 0.38 deleterious(0) unknown(0) TCGA-DK-A6AW-01 10 84733646 84733646 G T NRG3 Nonsense_Mutation p.G463* 0.36 TCGA-DK-A6AW-01 10 85933658 85933658 C A C10orf99 Missense_Mutation p.F17L 0.38 tolerated(0.5) unknown(0) TCGA-DK-A6AW-01 10 85964338 85964338 G A CDHR1 Missense_Mutation p.R280Q 0.48 tolerated(0.56) benign(0.009) TCGA-DK-A6AW-01 10 85968589 85968589 G T CDHR1 Missense_Mutation p.E424D 0.50 tolerated(0.07) benign(0.199) TCGA-DK-A6AW-01 10 88213410 88213410 T G WAPAL Intron 0.36 TCGA-DK-A6AW-01 10 88677032 88677032 C T BMPR1A Nonsense_Mutation p.R273* 0.38 TCGA-DK-A6AW-01 10 88703289 88703289 C T MMRN2 Missense_Mutation p.E418K 0.54 deleterious(0) probably_damaging(0.963) TCGA-DK-A6AW-01 10 88752057 88752057 G T RP11-96C23.5 RNA 0.32 TCGA-DK-A6AW-01 10 88946949 88946949 G A FAM35A Missense_Mutation p.R767K 0.34 tolerated(0.17) benign(0.041) TCGA-DK-A6AW-01 10 90427064 90427064 C A LIPF Missense_Mutation p.L14I 0.45 deleterious(0.02) possibly_damaging(0.657) TCGA-DK-A6AW-01 10 90582657 90582657 C T ANKRD22 3'UTR 0.44 TCGA-DK-A6AW-01 10 91163416 91163416 C T IFIT1 Missense_Mutation p.R462W 0.30 deleterious(0.05) benign(0.081) TCGA-DK-A6AW-01 10 91483763 91483763 A C KIF20B Missense_Mutation p.N589H 0.50 deleterious(0.04) benign(0.004) TCGA-DK-A6AW-01 10 93272164 93272164 C A HECTD2 3'UTR 0.42 TCGA-DK-A6AW-01 10 95276708 95276708 G T CEP55 Missense_Mutation p.E232D 0.40 tolerated(0.06) probably_damaging(0.991) TCGA-DK-A6AW-01 10 95347273 95347273 G T FFAR4 Missense_Mutation p.K347N 0.55 deleterious(0.01) benign(0.039) TCGA-DK-A6AW-01 10 95718528 95718528 T C PIPSL RNA 0.42 TCGA-DK-A6AW-01 10 95719696 95719696 C A PIPSL RNA 0.38 TCGA-DK-A6AW-01 10 96058153 96058153 C T PLCE1 Nonsense_Mutation p.R1729* 0.61 TCGA-DK-A6AW-01 10 96084941 96084941 C A PLCE1 Intron 0.42 TCGA-DK-A6AW-01 10 96121622 96121622 T G NOC3L Missense_Mutation p.N6T 0.52 deleterious_low_confidence(0.03) benign(0.317) TCGA-DK-A6AW-01 10 96291153 96291153 C T TBC1D12 Missense_Mutation p.S732L 0.37 deleterious(0) possibly_damaging(0.523) TCGA-DK-A6AW-01 10 96805628 96805628 C A CYP2C8 Missense_Mutation p.E300D 0.36 deleterious(0.03) benign(0.237) TCGA-DK-A6AW-01 10 97078181 97078181 T C SORBS1 Missense_Mutation p.Y1236C 0.46 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 10 97779635 97779635 C T CC2D2B Intron 0.45 TCGA-DK-A6AW-01 10 97791681 97791681 T C CC2D2B Silent p.F374F 0.44 TCGA-DK-A6AW-01 10 97951549 97951549 G T BLNK 3'UTR 0.36 TCGA-DK-A6AW-01 10 98078230 98078230 G A DNTT Missense_Mutation p.E109K 0.30 deleterious(0.01) possibly_damaging(0.823) TCGA-DK-A6AW-01 10 98082454 98082454 T G DNTT Missense_Mutation p.V240G 0.61 deleterious(0) probably_damaging(0.986) TCGA-DK-A6AW-01 10 98743699 98743699 C A C10orf12 Nonsense_Mutation p.S851* 0.42 TCGA-DK-A6AW-01 10 98762716 98762716 C T SLIT1 Missense_Mutation p.R1300H 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 10 99025731 99025731 C T ARHGAP19 Missense_Mutation p.D70N 0.44 deleterious(0) probably_damaging(0.929) TCGA-DK-A6AW-01 10 99129933 99129933 C T RRP12 Missense_Mutation p.E930K 0.25 tolerated(0.07) benign(0.018) TCGA-DK-A6AW-01 10 99148023 99148023 T C RRP12 Missense_Mutation p.T335A 0.39 tolerated(0.05) possibly_damaging(0.566) TCGA-DK-A6AW-01 10 99527340 99527340 G T SFRP5 Silent p.V295V 0.34 TCGA-DK-A6AW-01 10 99655723 99655723 G A CRTAC1 Silent p.F412F 0.51 TCGA-DK-A6AW-01 11 100996850 100996850 G A PGR Silent p.F559F 0.51 TCGA-DK-A6AW-01 11 101359740 101359740 G T TRPC6 Missense_Mutation p.F407L 0.47 tolerated(0.51) probably_damaging(0.965) TCGA-DK-A6AW-01 11 101777890 101777890 T C ANGPTL5 Missense_Mutation p.E62G 0.29 tolerated_low_confidence(0.36) benign(0.001) TCGA-DK-A6AW-01 11 101857673 101857673 C A KIAA1377 Missense_Mutation p.L1049I 0.43 deleterious(0.04) probably_damaging(0.96) TCGA-DK-A6AW-01 11 101868388 101868388 C A KIAA1377 3'UTR 0.44 TCGA-DK-A6AW-01 11 102395704 102395704 G A MMP7 Silent p.F192F 0.41 TCGA-DK-A6AW-01 11 1026380 1026380 G T MUC6 Missense_Mutation p.F831L 0.52 unknown(0) TCGA-DK-A6AW-01 11 102646038 102646038 C A MMP10 Missense_Mutation p.R316I 0.34 tolerated(0.06) benign(0.008) TCGA-DK-A6AW-01 11 104776229 104776229 G A RP11-693N9.2 RNA 0.41 TCGA-DK-A6AW-01 11 104872897 104872897 C A CASP5 Missense_Mutation p.R205I 0.50 deleterious(0.02) benign(0.006) TCGA-DK-A6AW-01 11 105483056 105483056 A G GRIA4 Missense_Mutation p.I48V 0.37 tolerated(0.76) benign(0.03) TCGA-DK-A6AW-01 11 105483087 105483087 C T GRIA4 Missense_Mutation p.S58L 0.40 deleterious(0.02) benign(0.228) TCGA-DK-A6AW-01 11 10622593 10622593 G A MRVI1 Missense_Mutation p.S630L 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 107197722 107197722 C A CWF19L2 Nonsense_Mutation p.E867* 0.45 TCGA-DK-A6AW-01 11 108115600 108115600 C T ATM Nonsense_Mutation p.R250* 0.56 TCGA-DK-A6AW-01 11 108121759 108121759 T G ATM Missense_Mutation p.F523V 0.50 tolerated(0.33) benign(0.091) TCGA-DK-A6AW-01 11 108158372 108158372 T G ATM Missense_Mutation p.L1347V 0.46 tolerated(0.06) probably_damaging(0.947) TCGA-DK-A6AW-01 11 108186556 108186556 C A ATM Missense_Mutation p.L2005I 0.41 deleterious(0) probably_damaging(0.991) TCGA-DK-A6AW-01 11 10824594 10824594 G A EIF4G2 Missense_Mutation p.R327C 0.38 deleterious(0) possibly_damaging(0.796) TCGA-DK-A6AW-01 11 108381141 108381141 C T EXPH5 Missense_Mutation p.R1698Q 0.06 tolerated(0.35) benign(0.182) TCGA-DK-A6AW-01 11 108559660 108559660 A G DDX10 Intron 0.48 TCGA-DK-A6AW-01 11 108562619 108562619 G A DDX10 Missense_Mutation p.R331Q 0.43 tolerated(0.08) probably_damaging(0.96) TCGA-DK-A6AW-01 11 108594006 108594006 G T DDX10 Missense_Mutation p.E594D 0.47 tolerated(0.1) benign(0.004) TCGA-DK-A6AW-01 11 111405176 111405176 G T C11orf88 Nonsense_Mutation p.E174* 0.30 TCGA-DK-A6AW-01 11 111407379 111407379 G A C11orf88 Intron 0.29 TCGA-DK-A6AW-01 11 111741033 111741033 A G ALG9 5'UTR 0.24 TCGA-DK-A6AW-01 11 111941990 111941990 C A PIH1D2 Missense_Mutation p.D107Y 0.43 deleterious(0.01) possibly_damaging(0.539) TCGA-DK-A6AW-01 11 112050169 112050169 G A BCO2 Missense_Mutation p.R86Q 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 11 113105786 113105786 C T NCAM1 Silent p.G624G 0.44 TCGA-DK-A6AW-01 11 113187036 113187036 C T TTC12 Silent p.I19I 0.38 TCGA-DK-A6AW-01 11 113286216 113286216 C T DRD2 Missense_Mutation p.R217H 0.44 deleterious(0) probably_damaging(0.975) TCGA-DK-A6AW-01 11 113295338 113295338 A C DRD2 Missense_Mutation p.D12E 0.51 tolerated_low_confidence(0.55) benign(0.001) TCGA-DK-A6AW-01 11 113650686 113650686 C T CLDN25 Nonsense_Mutation p.R57* 0.50 TCGA-DK-A6AW-01 11 113660296 113660296 C T ATF4P4 RNA 0.46 TCGA-DK-A6AW-01 11 11373970 11373970 A C CSNK2A3 Missense_Mutation p.F233V 0.41 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 11 113815414 113815414 C T HTR3B Nonsense_Mutation p.R343* 0.52 TCGA-DK-A6AW-01 11 114168712 114168712 G A NNMT Missense_Mutation p.G65D 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 116660879 116660879 G T APOA5 Missense_Mutation p.H356N 0.48 tolerated(0.41) benign(0.109) TCGA-DK-A6AW-01 11 117073783 117073783 C T TAGLN Silent p.I18I 0.37 TCGA-DK-A6AW-01 11 117073907 117073907 G A TAGLN Missense_Mutation p.V60M 0.42 tolerated(0.1) benign(0.079) TCGA-DK-A6AW-01 11 117261796 117261796 G T CEP164 Missense_Mutation p.Q716H 0.44 deleterious(0) possibly_damaging(0.83) TCGA-DK-A6AW-01 11 117307860 117307860 G A DSCAML1 Silent p.F1626F 0.48 TCGA-DK-A6AW-01 11 117710667 117710667 C T FXYD6 Intron 0.59 TCGA-DK-A6AW-01 11 118184572 118184572 C T CD3E Missense_Mutation p.A168V 0.69 deleterious(0.01) benign(0.141) TCGA-DK-A6AW-01 11 118222353 118222353 G T CD3G Missense_Mutation p.K150N 0.46 deleterious(0.04) probably_damaging(1) TCGA-DK-A6AW-01 11 118279893 118279893 A C ATP5L 3'UTR 0.30 TCGA-DK-A6AW-01 11 118521219 118521219 G A PHLDB1 Missense_Mutation p.D1281N 0.57 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 118938638 118938638 C A VPS11 Missense_Mutation p.S35Y 0.42 tolerated(0.07) benign(0.018) TCGA-DK-A6AW-01 11 118968736 118968736 A G DPAGT1 Missense_Mutation p.F249S 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 120180160 120180160 C T POU2F3 Silent p.I313I 0.43 TCGA-DK-A6AW-01 11 120197977 120197977 A C TMEM136 5'UTR 0.46 TCGA-DK-A6AW-01 11 12023906 12023906 T G DKK3 Missense_Mutation p.T98P 0.44 deleterious(0) possibly_damaging(0.719) TCGA-DK-A6AW-01 11 120308035 120308035 A C ARHGEF12 Missense_Mutation p.K315Q 0.30 deleterious(0.05) benign(0.066) TCGA-DK-A6AW-01 11 120998963 120998963 C T TECTA Silent p.P759P 0.37 TCGA-DK-A6AW-01 11 122850047 122850047 C A BSX Missense_Mutation p.K127N 0.49 deleterious(0.01) possibly_damaging(0.896) TCGA-DK-A6AW-01 11 123484242 123484242 T G GRAMD1B Silent p.T558T 0.36 TCGA-DK-A6AW-01 11 123811073 123811073 C T OR4D5 Silent p.I250I 0.48 TCGA-DK-A6AW-01 11 123893786 123893786 G A OR10G9 Missense_Mutation p.A23T 0.09 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 11 123909642 123909642 C T OR10G7 Missense_Mutation p.A23T 0.37 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 11 124794787 124794787 G A HEPACAM Silent p.I88I 0.36 TCGA-DK-A6AW-01 11 124863138 124863138 T C CCDC15 Missense_Mutation p.L738S 0.27 tolerated(0.5) benign(0.003) TCGA-DK-A6AW-01 11 125221229 125221229 G A PKNOX2 Missense_Mutation p.A10T 0.33 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-DK-A6AW-01 11 125301367 125301367 A G PKNOX2 3'UTR 0.41 TCGA-DK-A6AW-01 11 126133786 126133786 G A SRPR 3'UTR 0.49 TCGA-DK-A6AW-01 11 1271642 1271642 G T MUC5B Missense_Mutation p.R4511I 0.43 benign(0.007) TCGA-DK-A6AW-01 11 1272412 1272412 A C MUC5B Missense_Mutation p.T4768P 0.51 unknown(0) TCGA-DK-A6AW-01 11 129740008 129740008 C T NFRKB Missense_Mutation p.R996Q 0.47 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DK-A6AW-01 11 130067760 130067760 G A ST14 Missense_Mutation p.R460H 0.50 tolerated(0.07) benign(0.005) TCGA-DK-A6AW-01 11 130275495 130275495 G A ADAMTS8 Silent p.P876P 0.43 TCGA-DK-A6AW-01 11 130281347 130281347 T C ADAMTS8 Missense_Mutation p.Y572C 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 134180997 134180997 C T GLB1L3 Missense_Mutation p.A407V 0.50 tolerated(0.21) benign(0.009) TCGA-DK-A6AW-01 11 13466593 13466593 G A BTBD10 Missense_Mutation p.R27C 0.43 deleterious_low_confidence(0) benign(0.001) TCGA-DK-A6AW-01 11 13743342 13743342 C A FAR1 Missense_Mutation p.S398Y 0.41 deleterious(0.01) possibly_damaging(0.738) TCGA-DK-A6AW-01 11 14284332 14284332 C T RP11-21L19.1 3'Flank 0.43 TCGA-DK-A6AW-01 11 14486469 14486469 A C COPB1 Missense_Mutation p.F800V 0.30 deleterious(0) probably_damaging(0.951) TCGA-DK-A6AW-01 11 15994290 15994290 A C SOX6 3'UTR 0.31 TCGA-DK-A6AW-01 11 16340159 16340159 C T SOX6 Missense_Mutation p.R93Q 0.39 tolerated_low_confidence(0.32) probably_damaging(0.997) TCGA-DK-A6AW-01 11 17191216 17191216 C A PIK3C2A Missense_Mutation p.D25Y 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.653) TCGA-DK-A6AW-01 11 17434262 17434262 C T ABCC8 Missense_Mutation p.R836Q 0.64 deleterious(0) probably_damaging(0.971) TCGA-DK-A6AW-01 11 1780810 1780810 G A CTSD Silent p.F96F 0.51 TCGA-DK-A6AW-01 11 18194742 18194742 G T MRGPRX4 5'UTR 0.49 TCGA-DK-A6AW-01 11 18434294 18434294 G T LDHC Missense_Mutation p.E10D 0.43 tolerated(0.47) benign(0.071) TCGA-DK-A6AW-01 11 18637364 18637364 C A SPTY2D1 Nonsense_Mutation p.E153* 0.39 TCGA-DK-A6AW-01 11 18740191 18740191 C A IGSF22 Missense_Mutation p.D261Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 11 20122583 20122583 C A NAV2 Silent p.I2153I 0.49 TCGA-DK-A6AW-01 11 20629177 20629177 G T SLC6A5 Missense_Mutation p.D322Y 0.48 deleterious(0) possibly_damaging(0.82) TCGA-DK-A6AW-01 11 20668481 20668481 G A SLC6A5 Splice_Site p.X690_splice 0.57 TCGA-DK-A6AW-01 11 21592378 21592378 C T NELL1 Silent p.C683C 0.37 TCGA-DK-A6AW-01 11 22747968 22747968 C T GAS2 Missense_Mutation p.S133L 0.39 deleterious(0) probably_damaging(0.913) TCGA-DK-A6AW-01 11 2323293 2323293 G A TSPAN32 5'UTR 0.50 TCGA-DK-A6AW-01 11 2335797 2335797 G T TSPAN32 Missense_Mutation p.R180I 0.60 deleterious(0.02) probably_damaging(0.949) TCGA-DK-A6AW-01 11 24750721 24750721 C A LUZP2 Missense_Mutation p.D23E 0.31 deleterious(0.02) benign(0.006) TCGA-DK-A6AW-01 11 26558959 26558959 G A ANO3 Missense_Mutation p.R328H 0.46 deleterious(0.05) benign(0.032) TCGA-DK-A6AW-01 11 27402206 27402206 A C LGR4 Missense_Mutation p.L295V 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 11 27520130 27520130 T C LIN7C 3'UTR 0.43 TCGA-DK-A6AW-01 11 2799220 2799220 C T KCNQ1 Missense_Mutation p.R583C 0.37 deleterious(0.01) probably_damaging(0.953) TCGA-DK-A6AW-01 11 28045339 28045339 G A KIF18A Nonsense_Mutation p.R855* 0.50 TCGA-DK-A6AW-01 11 30032528 30032528 G T KCNA4 Missense_Mutation p.F566L 0.37 deleterious(0) possibly_damaging(0.857) TCGA-DK-A6AW-01 11 30034199 30034199 C A KCNA4 Missense_Mutation p.E9D 0.48 tolerated_low_confidence(1) unknown(0) TCGA-DK-A6AW-01 11 30517006 30517006 C T MPPED2 Missense_Mutation p.E125K 0.42 tolerated(0.43) benign(0.006) TCGA-DK-A6AW-01 11 31447884 31447884 G T DNAJC24 Nonsense_Mutation p.E101* 0.33 TCGA-DK-A6AW-01 11 31811520 31811520 C A PAX6 Nonsense_Mutation p.E425* 0.52 TCGA-DK-A6AW-01 11 32697163 32697163 C A CCDC73 Missense_Mutation p.R198I 0.42 deleterious(0) probably_damaging(0.957) TCGA-DK-A6AW-01 11 32697178 32697178 A T CCDC73 Missense_Mutation p.I193K 0.45 deleterious(0) probably_damaging(0.917) TCGA-DK-A6AW-01 11 32954971 32954971 G T QSER1 Nonsense_Mutation p.E594* 0.42 TCGA-DK-A6AW-01 11 35226111 35226111 G A CD44 Silent p.Q402Q 0.45 TCGA-DK-A6AW-01 11 36596435 36596435 G T RAG1 Missense_Mutation p.K527N 0.46 deleterious_low_confidence(0) benign(0.133) TCGA-DK-A6AW-01 11 3687470 3687470 C T CHRNA10 Missense_Mutation p.R407H 0.49 tolerated(0.26) benign(0.046) TCGA-DK-A6AW-01 11 3690573 3690573 C T CHRNA10 Missense_Mutation p.R72Q 0.35 deleterious(0.01) possibly_damaging(0.848) TCGA-DK-A6AW-01 11 4127440 4127440 G T RRM1 Missense_Mutation p.K91N 0.41 deleterious_low_confidence(0.04) benign(0.191) TCGA-DK-A6AW-01 11 43400811 43400811 C T TTC17 Missense_Mutation p.P63L 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 43511804 43511804 G A TTC17 Missense_Mutation p.V1016I 0.50 tolerated(0.18) probably_damaging(0.99) TCGA-DK-A6AW-01 11 4511066 4511066 G T OR52K1 Missense_Mutation p.K312N 0.42 deleterious(0.03) benign(0.012) TCGA-DK-A6AW-01 11 4566580 4566580 G T OR52M1 Nonsense_Mutation p.E54* 0.38 TCGA-DK-A6AW-01 11 45672083 45672083 C T CHST1 Missense_Mutation p.D131N 0.46 tolerated(0.09) benign(0.222) TCGA-DK-A6AW-01 11 45949053 45949053 C T GYLTL1B Missense_Mutation p.R505C 0.48 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 46100684 46100684 C A PHF21A Splice_Site p.X29_splice 0.33 TCGA-DK-A6AW-01 11 4623475 4623475 G A TRIM68 Silent p.N230N 0.38 TCGA-DK-A6AW-01 11 46677799 46677799 G T ATG13 Missense_Mutation p.V159F 0.50 deleterious(0.03) probably_damaging(0.995) TCGA-DK-A6AW-01 11 46765805 46765805 C T CKAP5 Missense_Mutation p.R1956Q 0.43 tolerated(0.08) benign(0.014) TCGA-DK-A6AW-01 11 46812089 46812089 G A CKAP5 Silent p.G565G 0.66 TCGA-DK-A6AW-01 11 46898849 46898849 G A LRP4 Missense_Mutation p.R1060C 0.41 deleterious(0) probably_damaging(0.951) TCGA-DK-A6AW-01 11 47289480 47289480 C A NR1H3 Missense_Mutation p.F335L 0.47 tolerated(0.14) possibly_damaging(0.576) TCGA-DK-A6AW-01 11 47345374 47345374 C A MADD Missense_Mutation p.F1510L 0.11 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 11 47726236 47726236 G T AGBL2 Missense_Mutation p.L149I 0.38 tolerated(0.12) benign(0.078) TCGA-DK-A6AW-01 11 47772520 47772520 G T FNBP4 Missense_Mutation p.S285Y 0.39 deleterious(0.02) possibly_damaging(0.547) TCGA-DK-A6AW-01 11 48188859 48188859 A T PTPRJ Missense_Mutation p.Y1320F 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 4825571 4825571 A G OR52R1 Missense_Mutation p.S14P 0.47 deleterious(0.01) benign(0.397) TCGA-DK-A6AW-01 11 48328335 48328335 T C OR4S1 Silent p.C187C 0.44 TCGA-DK-A6AW-01 11 48511207 48511207 G T OR4A47 Missense_Mutation p.R288I 0.47 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-DK-A6AW-01 11 49831354 49831354 G T RP11-707M1.1 RNA 0.57 TCGA-DK-A6AW-01 11 5142524 5142524 C A OR52A4 RNA 0.38 TCGA-DK-A6AW-01 11 5246876 5246876 C A HBB Missense_Mutation p.Q132H 0.46 deleterious(0.02) benign(0.144) TCGA-DK-A6AW-01 11 5269669 5269669 C A HBG1 Nonsense_Mutation p.E122* 0.39 TCGA-DK-A6AW-01 11 5344611 5344611 G T OR51B2 Missense_Mutation p.S306Y 0.44 tolerated(0.23) benign(0.252) TCGA-DK-A6AW-01 11 5510536 5510536 C A OR52D1 Silent p.V200V 0.52 TCGA-DK-A6AW-01 11 55135444 55135444 G A OR4A15 Missense_Mutation p.E29K 0.47 tolerated_low_confidence(0.16) benign(0.017) TCGA-DK-A6AW-01 11 5530371 5530371 G A UBQLN3 Missense_Mutation p.L140F 0.34 deleterious(0.04) benign(0.093) TCGA-DK-A6AW-01 11 55340522 55340522 G T OR4C16 Missense_Mutation p.D307Y 0.33 deleterious_low_confidence(0.02) benign(0.021) TCGA-DK-A6AW-01 11 55406649 55406649 T G OR4P4 Missense_Mutation p.F272L 0.90 deleterious(0.01) benign(0.443) TCGA-DK-A6AW-01 11 55432693 55432693 G T OR4C6 Missense_Mutation p.E17D 0.34 deleterious_low_confidence(0.01) benign(0.048) TCGA-DK-A6AW-01 11 55432757 55432757 G A OR4C6 Missense_Mutation p.E39K 0.51 deleterious_low_confidence(0) benign(0.018) TCGA-DK-A6AW-01 11 55587122 55587122 G T OR5D18 Missense_Mutation p.R6I 0.49 deleterious(0.05) benign(0.021) TCGA-DK-A6AW-01 11 5566093 5566093 G T OR52H1 Missense_Mutation p.L221I 0.54 deleterious(0.01) benign(0.311) TCGA-DK-A6AW-01 11 55761772 55761772 G A OR5F1 Silent p.T110T 0.40 TCGA-DK-A6AW-01 11 55798842 55798842 A G OR5AS1 Silent p.L316L 0.50 TCGA-DK-A6AW-01 11 558079 558079 C A C11orf35 Intron 0.57 TCGA-DK-A6AW-01 11 55890322 55890322 C A OR8H3 Silent p.V158V 0.47 TCGA-DK-A6AW-01 11 56058083 56058083 A C OR8H1 Missense_Mutation p.F152L 0.53 tolerated(0.25) benign(0.12) TCGA-DK-A6AW-01 11 56086313 56086313 C A OR8K3 Missense_Mutation p.F177L 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-DK-A6AW-01 11 56114127 56114127 A C OR8K1 Missense_Mutation p.I205L 0.51 tolerated_low_confidence(0.07) benign(0.113) TCGA-DK-A6AW-01 11 56114213 56114213 A C OR8K1 Missense_Mutation p.R233S 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-DK-A6AW-01 11 56143515 56143515 G A OR8U1 Missense_Mutation p.G139E 0.37 tolerated(0.05) benign(0.392) TCGA-DK-A6AW-01 11 56258791 56258791 C T OR5M8 Missense_Mutation p.R19H 0.45 tolerated(0.42) benign(0.002) TCGA-DK-A6AW-01 11 56468773 56468773 C A OR9G1 Missense_Mutation p.L304I 0.33 tolerated(0.46) benign(0.033) TCGA-DK-A6AW-01 11 5655897 5655897 G T TRIM34 Nonsense_Mutation p.E186* 0.50 TCGA-DK-A6AW-01 11 5717741 5717741 G T TRIM22 Missense_Mutation p.K93N 0.41 deleterious(0.01) possibly_damaging(0.697) TCGA-DK-A6AW-01 11 5717804 5717804 C A TRIM22 Silent p.V114V 0.50 TCGA-DK-A6AW-01 11 57256434 57256434 A G SLC43A1 Missense_Mutation p.V455A 0.38 deleterious(0) probably_damaging(0.936) TCGA-DK-A6AW-01 11 57381961 57381961 C A SERPING1 Silent p.V470V 0.40 TCGA-DK-A6AW-01 11 57413863 57413863 G A YPEL4 Silent p.C67C 0.37 TCGA-DK-A6AW-01 11 57509360 57509360 A C C11orf31 Missense_Mutation p.K68Q 0.75 tolerated(0.54) benign(0.005) TCGA-DK-A6AW-01 11 57971523 57971523 A C OR1S2 Missense_Mutation p.F44C 0.50 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 57971627 57971627 C A OR1S2 Missense_Mutation p.Q9H 0.40 tolerated_low_confidence(0.08) benign(0.365) TCGA-DK-A6AW-01 11 57996153 57996153 G T OR10Q1 Missense_Mutation p.F65L 0.41 deleterious(0) possibly_damaging(0.694) TCGA-DK-A6AW-01 11 58125976 58125976 C A OR5B17 Missense_Mutation p.E189D 0.40 tolerated_low_confidence(1) benign(0.005) TCGA-DK-A6AW-01 11 58170301 58170301 C T OR5B3 Silent p.E194E 0.42 TCGA-DK-A6AW-01 11 58170580 58170580 G A OR5B3 Silent p.I101I 0.47 TCGA-DK-A6AW-01 11 58275538 58275538 C T OR5B21 Missense_Mutation p.G14E 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 58478154 58478154 G T GLYAT Missense_Mutation p.L133I 0.42 deleterious(0.01) possibly_damaging(0.856) TCGA-DK-A6AW-01 11 58491919 58491919 G T GLYAT Silent p.S17S 0.43 TCGA-DK-A6AW-01 11 5862957 5862957 G A OR52E6 Silent p.L57L 0.42 TCGA-DK-A6AW-01 11 58892634 58892634 G A FAM111B Missense_Mutation p.R355Q 0.39 tolerated(0.09) benign(0.138) TCGA-DK-A6AW-01 11 58892923 58892923 C T FAM111B Silent p.C451C 0.47 TCGA-DK-A6AW-01 11 58920376 58920376 T C FAM111A Missense_Mutation p.F412S 0.47 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 11 58979029 58979029 C T MPEG1 Missense_Mutation p.R437Q 0.49 tolerated(0.25) benign(0.002) TCGA-DK-A6AW-01 11 58979145 58979145 T G MPEG1 Missense_Mutation p.Q398H 0.42 deleterious(0.04) benign(0.018) TCGA-DK-A6AW-01 11 59190145 59190145 G T OR5A2 Silent p.S94S 0.33 TCGA-DK-A6AW-01 11 59210871 59210871 C A OR5A1 Missense_Mutation p.S77Y 0.48 deleterious(0.01) possibly_damaging(0.883) TCGA-DK-A6AW-01 11 59417038 59417038 G T PATL1 Missense_Mutation p.L544I 0.61 tolerated(0.21) benign(0.254) TCGA-DK-A6AW-01 11 59480925 59480925 G A OR10V1 Nonsense_Mutation p.R132* 0.29 TCGA-DK-A6AW-01 11 60048185 60048185 G T MS4A4A Nonsense_Mutation p.E13* 0.38 TCGA-DK-A6AW-01 11 60182929 60182929 C T MS4A14 Missense_Mutation p.S196L 0.30 tolerated(0.11) benign(0.33) TCGA-DK-A6AW-01 11 60184343 60184343 G T MS4A14 Missense_Mutation p.E667D 0.49 tolerated(0.1) possibly_damaging(0.835) TCGA-DK-A6AW-01 11 60482596 60482596 C A MS4A8 Missense_Mutation p.Q213K 0.43 tolerated(0.9) benign(0.114) TCGA-DK-A6AW-01 11 60671245 60671245 C A PRPF19 Missense_Mutation p.E36D 0.51 tolerated(0.37) benign(0.139) TCGA-DK-A6AW-01 11 60694805 60694805 G A TMEM132A Missense_Mutation p.R77Q 0.37 deleterious(0) probably_damaging(0.981) TCGA-DK-A6AW-01 11 607922 607922 G A PHRF1 Silent p.T821T 0.46 TCGA-DK-A6AW-01 11 61017153 61017153 C T PGA5 Silent p.N262N 0.37 TCGA-DK-A6AW-01 11 61113336 61113336 C A DAK Missense_Mutation p.S498Y 0.57 deleterious(0.02) possibly_damaging(0.797) TCGA-DK-A6AW-01 11 61405142 61405142 T G RPLP0P2 RNA 0.36 TCGA-DK-A6AW-01 11 61548504 61548504 C T MYRF Silent p.P853P 0.46 TCGA-DK-A6AW-01 11 61570386 61570386 C T FADS1 Silent p.T447T 0.46 TCGA-DK-A6AW-01 11 61643328 61643328 G A FADS3 Silent p.I427I 0.55 TCGA-DK-A6AW-01 11 61908265 61908265 C T INCENP Missense_Mutation p.T478I 0.64 deleterious(0.05) benign(0.184) TCGA-DK-A6AW-01 11 62010810 62010810 C A SCGB1D2 Missense_Mutation p.F35L 0.46 tolerated(1) benign(0.008) TCGA-DK-A6AW-01 11 62040459 62040459 T G SCGB2A2 Missense_Mutation p.L92V 0.42 tolerated(0.54) benign(0.05) TCGA-DK-A6AW-01 11 62124488 62124488 C T ASRGL1 Silent p.G121G 0.52 TCGA-DK-A6AW-01 11 6243809 6243809 C T FAM160A2 Missense_Mutation p.A352T 0.41 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 11 6244425 6244425 C T FAM160A2 Missense_Mutation p.R274Q 0.45 tolerated(0.06) probably_damaging(0.996) TCGA-DK-A6AW-01 11 62560127 62560127 A C NXF1 Missense_Mutation p.F603V 0.41 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 11 62622151 62622151 A C SLC3A2 5'Flank 0.43 TCGA-DK-A6AW-01 11 6291133 6291133 C T CCKBR Missense_Mutation p.A129V 0.54 tolerated(0.77) benign(0.017) TCGA-DK-A6AW-01 11 62996003 62996003 A C SLC22A25 Missense_Mutation p.S146A 0.35 tolerated(0.12) possibly_damaging(0.53) TCGA-DK-A6AW-01 11 63231058 63231058 C T HRASLS5 Missense_Mutation p.A253T 0.41 deleterious(0.03) possibly_damaging(0.536) TCGA-DK-A6AW-01 11 63974872 63974872 C T FERMT3 Silent p.I12I 0.47 TCGA-DK-A6AW-01 11 63997456 63997456 G A NUDT22 Silent p.P302P 0.43 TCGA-DK-A6AW-01 11 64514804 64514804 C T PYGM Missense_Mutation p.R735H 0.35 tolerated(0.11) benign(0.113) TCGA-DK-A6AW-01 11 64599969 64599969 G A CDC42BPG Silent p.F1006F 0.41 TCGA-DK-A6AW-01 11 64702874 64702874 T G GPHA2 Missense_Mutation p.E20A 0.68 tolerated(0.41) benign(0.124) TCGA-DK-A6AW-01 11 64802428 64802428 C A SNX15 Missense_Mutation p.F122L 0.49 deleterious(0) possibly_damaging(0.9) TCGA-DK-A6AW-01 11 64815682 64815682 G T NAALADL1 Missense_Mutation p.F430L 0.47 tolerated(0.12) benign(0.033) TCGA-DK-A6AW-01 11 65057319 65057319 G A POLA2 Missense_Mutation p.R407Q 0.56 tolerated(0.33) benign(0.029) TCGA-DK-A6AW-01 11 65266183 65266183 G T MALAT1 RNA 0.50 TCGA-DK-A6AW-01 11 65294551 65294551 G A SCYL1 Missense_Mutation p.R271H 0.60 tolerated(0.15) benign(0.018) TCGA-DK-A6AW-01 11 6530165 6530165 T G DNHD1 Missense_Mutation p.F326V 0.44 probably_damaging(0.999) TCGA-DK-A6AW-01 11 65315030 65315030 C T LTBP3 Missense_Mutation p.E663K 0.47 deleterious(0) possibly_damaging(0.815) TCGA-DK-A6AW-01 11 66188702 66188702 G A NPAS4 Missense_Mutation p.A18T 0.46 deleterious(0.01) probably_damaging(0.922) TCGA-DK-A6AW-01 11 66189988 66189988 C T NPAS4 Missense_Mutation p.R132C 0.46 deleterious(0) benign(0.4) TCGA-DK-A6AW-01 11 66192480 66192480 G T NPAS4 Nonsense_Mutation p.E707* 0.44 TCGA-DK-A6AW-01 11 66299124 66299124 T G BBS1 Intron 0.50 TCGA-DK-A6AW-01 11 66322674 66322674 C T CTD-3074O7.2 3'Flank 0.49 TCGA-DK-A6AW-01 11 66325263 66325263 C T CTD-3074O7.2 3'Flank 0.36 TCGA-DK-A6AW-01 11 66357943 66357943 G A CCDC87 Silent p.S848S 0.14 TCGA-DK-A6AW-01 11 66360094 66360094 G T CCDC87 Nonsense_Mutation p.Y131* 0.30 TCGA-DK-A6AW-01 11 66455760 66455760 C T SPTBN2 Missense_Mutation p.R2085Q 0.59 tolerated(0.91) benign(0.01) TCGA-DK-A6AW-01 11 6648152 6648152 C T DCHS1 Missense_Mutation p.A2040T 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 6653796 6653796 G A DCHS1 Nonsense_Mutation p.R983* 0.50 TCGA-DK-A6AW-01 11 6655200 6655200 C A DCHS1 Missense_Mutation p.D680Y 0.48 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 66595782 66595782 C A C11orf80 Missense_Mutation p.R539S 0.43 tolerated(0.1) benign(0.014) TCGA-DK-A6AW-01 11 66611760 66611760 C T RCE1 Missense_Mutation p.L126F 0.50 tolerated(0.06) benign(0.186) TCGA-DK-A6AW-01 11 6661920 6661920 C T DCHS1 Missense_Mutation p.A309T 0.49 tolerated(0.7) benign(0.15) TCGA-DK-A6AW-01 11 67068531 67068531 G A ANKRD13D Missense_Mutation p.D382N 0.40 tolerated(0.05) benign(0.317) TCGA-DK-A6AW-01 11 67077000 67077000 C A SSH3 Missense_Mutation p.F398L 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 67274967 67274967 G A CDK2AP2 Missense_Mutation p.A61V 0.35 tolerated(0.09) benign(0.093) TCGA-DK-A6AW-01 11 67790170 67790170 G A ALDH3B1 Missense_Mutation p.E351K 0.50 tolerated(0.39) benign(0.005) TCGA-DK-A6AW-01 11 6789913 6789913 G T OR2AG2 Silent p.I92I 0.42 TCGA-DK-A6AW-01 11 6790110 6790110 G A OR2AG2 Missense_Mutation p.L27F 0.43 tolerated(0.1) benign(0.03) TCGA-DK-A6AW-01 11 68029192 68029192 G A C11orf24 Missense_Mutation p.A424V 0.44 deleterious(0) possibly_damaging(0.866) TCGA-DK-A6AW-01 11 68305134 68305134 T C PPP6R3 Translation_Start_Site p.M1? 0.56 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 68363567 68363567 C T PPP6R3 Missense_Mutation p.S640L 0.54 tolerated(0.67) benign(0.414) TCGA-DK-A6AW-01 11 68748293 68748293 G A MRGPRD Nonsense_Mutation p.R55* 0.37 TCGA-DK-A6AW-01 11 70331552 70331552 G T SHANK2 Missense_Mutation p.L1617I 0.38 tolerated(0.06) benign(0.364) TCGA-DK-A6AW-01 11 71189494 71189494 G T NADSYN1 Missense_Mutation p.E284D 0.40 tolerated(0.07) benign(0.104) TCGA-DK-A6AW-01 11 71727178 71727178 G A NUMA1 Silent p.F457F 0.50 TCGA-DK-A6AW-01 11 71734187 71734187 C T NUMA1 Missense_Mutation p.R72Q 0.40 benign(0.002) TCGA-DK-A6AW-01 11 71949215 71949215 C A INPPL1 Missense_Mutation p.L1228I 0.53 deleterious(0.05) unknown(0) TCGA-DK-A6AW-01 11 72470355 72470355 C A STARD10 Missense_Mutation p.K93N 0.38 deleterious(0) possibly_damaging(0.896) TCGA-DK-A6AW-01 11 73007933 73007933 C T P2RY6 Missense_Mutation p.R124C 0.43 deleterious(0.01) probably_damaging(1) TCGA-DK-A6AW-01 11 73390759 73390759 G A RAB6A Nonsense_Mutation p.R168* 0.47 TCGA-DK-A6AW-01 11 73427320 73427320 T G RAB6A Missense_Mutation p.N126T 0.48 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 11 73714814 73714814 G A UCP3 Intron 0.40 TCGA-DK-A6AW-01 11 73820105 73820105 A C C2CD3 Missense_Mutation p.Y646D 0.39 deleterious(0) probably_damaging(0.915) TCGA-DK-A6AW-01 11 74345713 74345713 G T POLD3 Missense_Mutation p.K364N 0.48 deleterious(0) benign(0.059) TCGA-DK-A6AW-01 11 74800196 74800196 G C OR2AT4 Missense_Mutation p.A188G 0.45 deleterious(0.04) possibly_damaging(0.79) TCGA-DK-A6AW-01 11 74904426 74904426 C T SLCO2B1 Silent p.I413I 0.50 TCGA-DK-A6AW-01 11 75046188 75046188 C T ARRB1 Intron 0.31 TCGA-DK-A6AW-01 11 76062087 76062087 G A PRKRIR Missense_Mutation p.R703C 0.49 deleterious(0.03) benign(0.164) TCGA-DK-A6AW-01 11 76158035 76158035 G T C11orf30 Missense_Mutation p.R18I 0.48 deleterious_low_confidence(0) benign(0.311) TCGA-DK-A6AW-01 11 76371068 76371068 C A LRRC32 Missense_Mutation p.E523D 0.38 tolerated(0.18) benign(0.014) TCGA-DK-A6AW-01 11 76751039 76751039 G A B3GNT6 Silent p.G148G 0.39 TCGA-DK-A6AW-01 11 76841690 76841690 C A MYO7A Missense_Mutation p.L4I 0.48 tolerated(0.1) benign(0.104) TCGA-DK-A6AW-01 11 76869398 76869398 A G MYO7A Missense_Mutation p.M309V 0.29 tolerated(0.11) benign(0.043) TCGA-DK-A6AW-01 11 76917157 76917157 G T MYO7A Missense_Mutation p.K1884N 0.33 deleterious(0.02) possibly_damaging(0.809) TCGA-DK-A6AW-01 11 76928268 76928268 G T GDPD4 3'UTR 0.50 TCGA-DK-A6AW-01 11 77314646 77314646 C T AQP11 Missense_Mutation p.S222L 0.40 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 11 77832130 77832130 G A ALG8 Silent p.F153F 0.44 TCGA-DK-A6AW-01 11 77921045 77921045 A G USP35 Missense_Mutation p.E715G 0.42 tolerated(0.11) unknown(0) TCGA-DK-A6AW-01 11 78204145 78204145 C A NARS2 Missense_Mutation p.E262D 0.45 deleterious(0.02) probably_damaging(0.967) TCGA-DK-A6AW-01 11 78413035 78413035 G T TENM4 Silent p.S1541S 0.44 TCGA-DK-A6AW-01 11 78413213 78413213 T C TENM4 Missense_Mutation p.Y1482C 0.37 deleterious(0) probably_damaging(0.984) TCGA-DK-A6AW-01 11 8016018 8016018 G A EIF3F Silent p.T233T 0.38 TCGA-DK-A6AW-01 11 82642818 82642818 C A C11orf82 Missense_Mutation p.F146L 0.43 tolerated(0.1) benign(0.023) TCGA-DK-A6AW-01 11 82698516 82698516 G T RAB30 Intron 0.53 TCGA-DK-A6AW-01 11 82877031 82877031 G A PCF11 Silent p.S364S 0.39 TCGA-DK-A6AW-01 11 82895797 82895797 T C PCF11 Missense_Mutation p.V1510A 0.44 tolerated(0.09) probably_damaging(0.99) TCGA-DK-A6AW-01 11 82921451 82921451 G A ANKRD42 Missense_Mutation p.R119Q 0.47 tolerated(0.06) benign(0.316) TCGA-DK-A6AW-01 11 83173015 83173015 C T DLG2 Intron 0.45 TCGA-DK-A6AW-01 11 86125852 86125852 A T CCDC81 Missense_Mutation p.K471N 0.19 deleterious(0.01) possibly_damaging(0.777) TCGA-DK-A6AW-01 11 86157513 86157513 G A ME3 Missense_Mutation p.A466V 0.43 deleterious(0.01) possibly_damaging(0.847) TCGA-DK-A6AW-01 11 870430 870430 G A CHID1 Silent p.F368F 0.32 TCGA-DK-A6AW-01 11 87883116 87883116 T G RAB38 Missense_Mutation p.E70D 0.53 tolerated(0.07) probably_damaging(0.989) TCGA-DK-A6AW-01 11 88027383 88027383 C A CTSC Missense_Mutation p.D395Y 0.48 deleterious(0.02) benign(0.277) TCGA-DK-A6AW-01 11 88300776 88300776 G A GRM5 Missense_Mutation p.A692V 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 11 88337912 88337912 G A GRM5 Silent p.F456F 0.50 TCGA-DK-A6AW-01 11 88583186 88583186 G T GRM5 Missense_Mutation p.H267N 0.47 deleterious(0.03) possibly_damaging(0.86) TCGA-DK-A6AW-01 11 88911509 88911509 G A TYR Missense_Mutation p.E130K 0.38 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 11 89070667 89070667 C A NOX4 Missense_Mutation p.R488I 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A6AW-01 11 89424104 89424104 G T FOLH1B RNA 0.46 TCGA-DK-A6AW-01 11 92086977 92086977 C T FAT3 Nonsense_Mutation p.R567* 0.45 TCGA-DK-A6AW-01 11 92533548 92533548 C T FAT3 Missense_Mutation p.R2457W 0.44 probably_damaging(0.984) TCGA-DK-A6AW-01 11 92534510 92534510 A C FAT3 Silent p.P2777P 0.48 TCGA-DK-A6AW-01 11 92534852 92534852 C A FAT3 Missense_Mutation p.F2891L 0.32 benign(0.364) TCGA-DK-A6AW-01 11 92538448 92538448 T G FAT3 Missense_Mutation p.F3009C 0.36 probably_damaging(0.981) TCGA-DK-A6AW-01 11 92916023 92916023 G T SLC36A4 Missense_Mutation p.S103Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 11 93127693 93127693 C A CCDC67 Silent p.I370I 0.62 TCGA-DK-A6AW-01 11 93523932 93523932 C A MED17 Missense_Mutation p.L204I 0.37 tolerated(0.57) probably_damaging(0.961) TCGA-DK-A6AW-01 11 93779030 93779030 C A HEPHL1 Missense_Mutation p.S121Y 0.46 deleterious(0) probably_damaging(0.961) TCGA-DK-A6AW-01 11 93796790 93796790 G A HEPHL1 Missense_Mutation p.D178N 0.44 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 93806226 93806226 G T HEPHL1 Missense_Mutation p.R423I 0.43 deleterious(0) possibly_damaging(0.864) TCGA-DK-A6AW-01 11 93822055 93822055 G A HEPHL1 Missense_Mutation p.A739T 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 11 94862278 94862278 T G ENDOD1 Missense_Mutation p.I346M 0.52 tolerated(0.1) benign(0.011) TCGA-DK-A6AW-01 11 94918550 94918550 C T SESN3 Missense_Mutation p.G211D 0.40 deleterious(0) probably_damaging(0.959) TCGA-DK-A6AW-01 11 96124137 96124137 C A JRKL Missense_Mutation p.F108L 0.36 tolerated(0.74) benign(0.114) TCGA-DK-A6AW-01 11 96125218 96125218 G T JRKL Nonsense_Mutation p.E469* 0.40 TCGA-DK-A6AW-01 11 9812136 9812136 G T SBF2 Missense_Mutation p.F1555L 0.43 tolerated(0.11) possibly_damaging(0.831) TCGA-DK-A6AW-01 12 100200243 100200243 C T ANKS1B Missense_Mutation p.R203H 0.50 deleterious(0) probably_damaging(0.93) TCGA-DK-A6AW-01 12 100492234 100492234 T C UHRF1BP1L Missense_Mutation p.N142D 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-DK-A6AW-01 12 1005583 1005583 C T WNK1 Missense_Mutation p.A1977V 0.39 tolerated(0.61) benign(0.007) TCGA-DK-A6AW-01 12 100720403 100720403 C T SCYL2 Missense_Mutation p.R505C 0.44 deleterious(0) benign(0.245) TCGA-DK-A6AW-01 12 100796512 100796512 G T SLC17A8 Missense_Mutation p.A348S 0.42 tolerated(0.26) possibly_damaging(0.677) TCGA-DK-A6AW-01 12 10124130 10124130 G A CLEC12A Intron 0.30 TCGA-DK-A6AW-01 12 101490420 101490420 C T ANO4 Silent p.L580L 0.47 TCGA-DK-A6AW-01 12 101493396 101493396 G T ANO4 Nonsense_Mutation p.E648* 0.38 TCGA-DK-A6AW-01 12 101550914 101550914 C A SLC5A8 3'UTR 0.33 TCGA-DK-A6AW-01 12 102590926 102590926 G T PMCH Missense_Mutation p.F91L 0.43 tolerated(0.05) benign(0.005) TCGA-DK-A6AW-01 12 103248980 103248980 C A PAH Nonsense_Mutation p.E214* 0.47 TCGA-DK-A6AW-01 12 103288584 103288584 A G PAH Missense_Mutation p.I94T 0.51 tolerated(0.24) benign(0.049) TCGA-DK-A6AW-01 12 104089618 104089618 C A STAB2 Missense_Mutation p.S1193Y 0.31 deleterious(0) possibly_damaging(0.748) TCGA-DK-A6AW-01 12 104098377 104098377 C T STAB2 Silent p.F1295F 0.47 TCGA-DK-A6AW-01 12 105239740 105239740 T G SLC41A2 Missense_Mutation p.N423T 0.51 deleterious(0) probably_damaging(0.964) TCGA-DK-A6AW-01 12 10525817 10525817 C T KLRK1 Missense_Mutation p.E183K 0.55 tolerated(0.26) benign(0.052) TCGA-DK-A6AW-01 12 105520091 105520091 G A KIAA1033 Missense_Mutation p.R330Q 0.50 tolerated(0.16) possibly_damaging(0.463) TCGA-DK-A6AW-01 12 105536928 105536928 C T KIAA1033 Silent p.D639D 0.31 TCGA-DK-A6AW-01 12 107126765 107126765 C T RFX4 Missense_Mutation p.S521L 0.51 tolerated(0.34) benign(0.005) TCGA-DK-A6AW-01 12 107279865 107279865 C A RIC8B 3'UTR 0.39 TCGA-DK-A6AW-01 12 108145753 108145753 C T PRDM4 Missense_Mutation p.D189N 0.46 deleterious_low_confidence(0.03) benign(0.221) TCGA-DK-A6AW-01 12 109017215 109017215 G T SELPLG Missense_Mutation p.S306Y 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A6AW-01 12 110234388 110234388 T C TRPV4 Missense_Mutation p.D425G 0.51 deleterious(0) probably_damaging(0.945) TCGA-DK-A6AW-01 12 110246208 110246208 C T TRPV4 Missense_Mutation p.R151Q 0.33 deleterious(0.03) benign(0.381) TCGA-DK-A6AW-01 12 110341854 110341854 G T TCHP Nonsense_Mutation p.E101* 0.55 TCGA-DK-A6AW-01 12 110370962 110370962 G A GIT2 Missense_Mutation p.R701C 0.50 tolerated(0.05) benign(0.009) TCGA-DK-A6AW-01 12 110385099 110385099 C T GIT2 Missense_Mutation p.E535K 0.39 tolerated(0.06) possibly_damaging(0.522) TCGA-DK-A6AW-01 12 110655852 110655852 C T IFT81 Missense_Mutation p.L618F 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 110777356 110777356 A C ATP2A2 Missense_Mutation p.S531R 0.52 tolerated(0.1) benign(0.079) TCGA-DK-A6AW-01 12 111089216 111089216 A C HVCN1 Missense_Mutation p.F150C 0.52 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 111351056 111351056 G A MYL2 Missense_Mutation p.A116V 0.44 deleterious(0.02) possibly_damaging(0.548) TCGA-DK-A6AW-01 12 111786285 111786285 C T CUX2 3'UTR 0.62 TCGA-DK-A6AW-01 12 11214171 11214171 G T TAS2R46 Nonsense_Mutation p.Y241* 0.51 TCGA-DK-A6AW-01 12 11214860 11214860 G T TAS2R46 Missense_Mutation p.L12I 0.33 tolerated(0.15) benign(0.192) TCGA-DK-A6AW-01 12 112227677 112227677 A C ALDH2 Missense_Mutation p.D164A 0.33 deleterious(0.03) benign(0.36) TCGA-DK-A6AW-01 12 113537802 113537802 C T RASAL1 Missense_Mutation p.D785N 0.45 deleterious(0.01) possibly_damaging(0.543) TCGA-DK-A6AW-01 12 113837391 113837391 C A SDS Missense_Mutation p.K41N 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 114390325 114390325 T G RBM19 Missense_Mutation p.N331T 0.40 deleterious(0.03) possibly_damaging(0.665) TCGA-DK-A6AW-01 12 11546119 11546119 C T PRB2 Missense_Mutation p.R298Q 0.50 tolerated_low_confidence(0.36) unknown(0) TCGA-DK-A6AW-01 12 118610330 118610330 T G TAOK3 Missense_Mutation p.N611H 0.43 deleterious(0.01) benign(0.001) TCGA-DK-A6AW-01 12 118651873 118651873 G A TAOK3 Missense_Mutation p.A229V 0.33 deleterious(0) possibly_damaging(0.497) TCGA-DK-A6AW-01 12 119957961 119957961 C A CCDC60 Missense_Mutation p.S335Y 0.51 tolerated(0.15) benign(0.032) TCGA-DK-A6AW-01 12 120150420 120150420 C T CIT Missense_Mutation p.E1554K 0.48 deleterious(0) possibly_damaging(0.894) TCGA-DK-A6AW-01 12 120750961 120750961 A G SIRT4 3'UTR 0.38 TCGA-DK-A6AW-01 12 121098024 121098024 C T CABP1 Silent p.F237F 0.36 TCGA-DK-A6AW-01 12 121435406 121435406 T C HNF1A Missense_Mutation p.V480A 0.38 tolerated(0.28) possibly_damaging(0.491) TCGA-DK-A6AW-01 12 121438965 121438965 C A HNF1A Silent p.I622I 0.32 TCGA-DK-A6AW-01 12 121783661 121783661 C A ANAPC5 Nonsense_Mutation p.E191* 0.48 TCGA-DK-A6AW-01 12 122396388 122396388 G A WDR66 Silent p.E647E 0.40 TCGA-DK-A6AW-01 12 122437650 122437650 T G WDR66 Missense_Mutation p.F1012C 0.51 deleterious(0) probably_damaging(0.922) TCGA-DK-A6AW-01 12 122658409 122658409 C T IL31 Silent p.S49S 0.45 TCGA-DK-A6AW-01 12 123380654 123380654 G A VPS37B 5'UTR 0.33 TCGA-DK-A6AW-01 12 123806092 123806092 A G SBNO1 Silent p.D771D 0.57 TCGA-DK-A6AW-01 12 12397410 12397410 C A LRP6 Nonsense_Mutation p.E79* 0.39 TCGA-DK-A6AW-01 12 123983217 123983217 C A RILPL1 Missense_Mutation p.Q225H 0.40 deleterious(0) possibly_damaging(0.896) TCGA-DK-A6AW-01 12 124252152 124252152 G T DNAH10 Splice_Site p.X11_splice 0.32 TCGA-DK-A6AW-01 12 124258770 124258770 A C DNAH10 Missense_Mutation p.N133H 0.51 possibly_damaging(0.498) TCGA-DK-A6AW-01 12 124303702 124303702 G A DNAH10 Missense_Mutation p.R1184Q 0.48 benign(0.003) TCGA-DK-A6AW-01 12 125270830 125270830 G A SCARB1 Intron 0.47 TCGA-DK-A6AW-01 12 125298763 125298763 G A SCARB1 Silent p.F205F 0.42 TCGA-DK-A6AW-01 12 126128759 126128759 G A TMEM132B Silent p.Q520Q 0.37 TCGA-DK-A6AW-01 12 128899680 128899680 C T TMEM132C Silent p.A163A 0.48 TCGA-DK-A6AW-01 12 12940432 12940432 A C APOLD1 Missense_Mutation p.K229T 0.42 deleterious(0) possibly_damaging(0.761) TCGA-DK-A6AW-01 12 129563190 129563190 G A TMEM132D Silent p.L668L 0.47 TCGA-DK-A6AW-01 12 130015627 130015627 C A TMEM132D Missense_Mutation p.K364N 0.32 deleterious(0.01) benign(0.026) TCGA-DK-A6AW-01 12 130831078 130831078 T A PIWIL1 Nonsense_Mutation p.C160* 0.35 TCGA-DK-A6AW-01 12 130833873 130833873 G A PIWIL1 Missense_Mutation p.R275Q 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 12 131623791 131623791 G A GPR133 Missense_Mutation p.D870N 0.56 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DK-A6AW-01 12 132475180 132475180 G T EP400 Splice_Site p.X851_splice 0.41 TCGA-DK-A6AW-01 12 132539678 132539678 C T EP400 Silent p.I2603I 0.55 TCGA-DK-A6AW-01 12 133196898 133196898 G T P2RX2 Missense_Mutation p.K200N 0.46 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 12 133197044 133197044 G A P2RX2 Missense_Mutation p.D217N 0.47 tolerated(0.58) benign(0.008) TCGA-DK-A6AW-01 12 133201512 133201512 G A POLE Silent p.F2242F 0.60 TCGA-DK-A6AW-01 12 133253184 133253184 G C POLE Missense_Mutation p.P286R 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 133312086 133312086 G A ANKLE2 Missense_Mutation p.R536C 0.47 deleterious(0.02) benign(0.091) TCGA-DK-A6AW-01 12 133384879 133384879 G T GOLGA3 Missense_Mutation p.S259Y 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.807) TCGA-DK-A6AW-01 12 13715602 13715602 A G GRIN2B 3'UTR 0.62 TCGA-DK-A6AW-01 12 13716898 13716898 G A GRIN2B Missense_Mutation p.R1092W 0.12 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 14940132 14940132 C A WBP11 Missense_Mutation p.R598I 0.40 deleterious(0.04) probably_damaging(0.962) TCGA-DK-A6AW-01 12 14982273 14982273 T A ART4 3'UTR 0.45 TCGA-DK-A6AW-01 12 15818802 15818802 A G EPS8 Silent p.S208S 0.42 TCGA-DK-A6AW-01 12 16704182 16704182 C A LMO3 Nonsense_Mutation p.E160* 0.45 TCGA-DK-A6AW-01 12 1702831 1702831 G T FBXL14 Missense_Mutation p.S134R 0.48 tolerated(0.08) possibly_damaging(0.899) TCGA-DK-A6AW-01 12 18241852 18241852 C A RERGL Nonsense_Mutation p.E32* 0.38 TCGA-DK-A6AW-01 12 18715739 18715739 G T PIK3C2G Missense_Mutation p.Q1190H 0.24 tolerated(0.05) benign(0.02) TCGA-DK-A6AW-01 12 18854444 18854444 C A PLCZ1 Missense_Mutation p.K336N 0.53 tolerated(0.1) benign(0.382) TCGA-DK-A6AW-01 12 18891248 18891248 C T CAPZA3 Missense_Mutation p.R16C 0.43 tolerated(0.31) benign(0.002) TCGA-DK-A6AW-01 12 20868136 20868136 G A SLCO1C1 Missense_Mutation p.G198E 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 21069042 21069042 A G SLCO1B3 Missense_Mutation p.K657R 0.45 tolerated(0.2) benign(0.053) TCGA-DK-A6AW-01 12 21958992 21958992 C A ABCC9 Missense_Mutation p.E1484D 0.50 tolerated(0.76) benign(0.028) TCGA-DK-A6AW-01 12 22354471 22354471 C A ST8SIA1 3'UTR 0.52 TCGA-DK-A6AW-01 12 22677432 22677432 C T C2CD5 Missense_Mutation p.R192K 0.47 deleterious(0) possibly_damaging(0.852) TCGA-DK-A6AW-01 12 23893859 23893859 G T SOX5 Missense_Mutation p.A228D 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 12 23999032 23999032 C T SOX5 Silent p.E122E 0.45 TCGA-DK-A6AW-01 12 25357293 25357293 C T LYRM5 3'UTR 0.31 TCGA-DK-A6AW-01 12 25362828 25362828 G T KRAS 3'UTR 0.54 TCGA-DK-A6AW-01 12 25656717 25656717 T C IFLTD1 Missense_Mutation p.T403A 0.50 tolerated(0.75) unknown(0) TCGA-DK-A6AW-01 12 26493182 26493182 A C ITPR2 Missense_Mutation p.I2646S 0.50 deleterious(0) possibly_damaging(0.709) TCGA-DK-A6AW-01 12 26629899 26629899 T C ITPR2 Silent p.R2055R 0.65 TCGA-DK-A6AW-01 12 26812056 26812056 G A ITPR2 Missense_Mutation p.R626W 0.42 deleterious(0.01) possibly_damaging(0.479) TCGA-DK-A6AW-01 12 27077380 27077380 G A ASUN Missense_Mutation p.R238C 0.46 tolerated(0.14) benign(0.005) TCGA-DK-A6AW-01 12 27462050 27462050 C T STK38L Missense_Mutation p.R105W 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 12 27573351 27573351 C T ARNTL2 Silent p.F599F 0.41 TCGA-DK-A6AW-01 12 2775903 2775903 G A CACNA1C Silent p.P1574P 0.56 TCGA-DK-A6AW-01 12 29596300 29596300 A C OVCH1 Missense_Mutation p.L1051V 0.45 deleterious(0.02) benign(0.007) TCGA-DK-A6AW-01 12 29667535 29667535 T C TMTC1 Silent p.A770A 0.39 TCGA-DK-A6AW-01 12 2983165 2983165 G A FOXM1 Silent p.C160C 0.36 TCGA-DK-A6AW-01 12 31842008 31842008 G A AMN1 Silent p.V212V 0.39 TCGA-DK-A6AW-01 12 32908656 32908656 G T YARS2 Missense_Mutation p.F51L 0.45 tolerated(0.33) benign(0.001) TCGA-DK-A6AW-01 12 33560069 33560069 T G SYT10 Missense_Mutation p.E244D 0.32 tolerated(0.58) benign(0.036) TCGA-DK-A6AW-01 12 33579128 33579128 A G SYT10 Silent p.L152L 0.50 TCGA-DK-A6AW-01 12 351852 351852 C T SLC6A13 Missense_Mutation p.A136T 0.33 deleterious(0.03) probably_damaging(0.976) TCGA-DK-A6AW-01 12 38714053 38714053 G T ALG10B Missense_Mutation p.A154S 0.39 tolerated(0.59) benign(0.1) TCGA-DK-A6AW-01 12 39703397 39703397 C T KIF21A Missense_Mutation p.R1423Q 0.44 deleterious(0.01) possibly_damaging(0.849) TCGA-DK-A6AW-01 12 40013448 40013448 G T ABCD2 5'UTR 0.42 TCGA-DK-A6AW-01 12 40040669 40040669 G T C12orf40 Missense_Mutation p.K121N 0.38 deleterious(0) probably_damaging(0.923) TCGA-DK-A6AW-01 12 40671949 40671949 A C LRRK2 Missense_Mutation p.K709N 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 12 40696685 40696685 G T LRRK2 Splice_Site p.X1197_splice 0.47 TCGA-DK-A6AW-01 12 41365345 41365345 C A CNTN1 Intron 0.62 TCGA-DK-A6AW-01 12 42778751 42778751 G A PPHLN1 Missense_Mutation p.R174H 0.46 tolerated(0.25) benign(0.018) TCGA-DK-A6AW-01 12 43824171 43824171 C T ADAMTS20 Missense_Mutation p.R1122H 0.35 deleterious(0.04) benign(0.157) TCGA-DK-A6AW-01 12 43896143 43896143 C A ADAMTS20 Missense_Mutation p.V227L 0.46 tolerated(0.7) benign(0.001) TCGA-DK-A6AW-01 12 43896152 43896152 C A ADAMTS20 Missense_Mutation p.D224Y 0.44 deleterious(0.02) benign(0.067) TCGA-DK-A6AW-01 12 44190783 44190783 C A TWF1 Missense_Mutation p.R300I 0.47 deleterious(0) benign(0.322) TCGA-DK-A6AW-01 12 4626293 4626293 C A C12orf4 Nonsense_Mutation p.E366* 0.50 TCGA-DK-A6AW-01 12 4737065 4737065 C T AKAP3 Missense_Mutation p.D335N 0.54 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 48095371 48095371 C T RPAP3 Missense_Mutation p.R57Q 0.46 deleterious(0) benign(0.043) TCGA-DK-A6AW-01 12 48106349 48106349 C T ENDOU Missense_Mutation p.E308K 0.47 tolerated(0.51) benign(0.027) TCGA-DK-A6AW-01 12 48152344 48152344 C A RAPGEF3 5'UTR 0.53 TCGA-DK-A6AW-01 12 48439095 48439095 G A SENP1 3'UTR 0.38 TCGA-DK-A6AW-01 12 48596611 48596611 G T OR10AD1 Silent p.I155I 0.41 TCGA-DK-A6AW-01 12 49075502 49075502 T G KANSL2 Intron 0.52 TCGA-DK-A6AW-01 12 49110359 49110359 C A CCNT1 Nonsense_Mutation p.E34* 0.04 TCGA-DK-A6AW-01 12 49231142 49231142 C T DDX23 Missense_Mutation p.R263Q 0.54 deleterious(0.05) benign(0.082) TCGA-DK-A6AW-01 12 49312219 49312219 G T CCDC65 Missense_Mutation p.E257D 0.41 tolerated(0.05) benign(0.162) TCGA-DK-A6AW-01 12 49315773 49315773 C A FKBP11 Missense_Mutation p.K200N 0.35 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6AW-01 12 49420032 49420032 C T KMT2D Silent p.P5239P 0.56 TCGA-DK-A6AW-01 12 49425169 49425170 - T KMT2D Frame_Shift_Ins p.I4440Nfs*47 0.37 TCGA-DK-A6AW-01 12 49448402 49448403 - G KMT2D Frame_Shift_Ins p.G104Rfs*4 0.41 TCGA-DK-A6AW-01 12 49579157 49579157 G A TUBA1A Missense_Mutation p.A331V 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.674) TCGA-DK-A6AW-01 12 49933232 49933232 G T KCNH3 Missense_Mutation p.Q11H 0.44 deleterious(0) possibly_damaging(0.727) TCGA-DK-A6AW-01 12 49937726 49937726 C T KCNH3 Silent p.F284F 0.49 TCGA-DK-A6AW-01 12 50042077 50042077 G A FMNL3 Missense_Mutation p.R859W 0.35 tolerated(0.12) probably_damaging(0.996) TCGA-DK-A6AW-01 12 5020791 5020791 G A KCNA1 Missense_Mutation p.D83N 0.36 deleterious(0) probably_damaging(0.958) TCGA-DK-A6AW-01 12 50236899 50236899 C T BCDIN3D 5'UTR 0.52 TCGA-DK-A6AW-01 12 51497497 51497497 C T TFCP2 Missense_Mutation p.R339Q 0.39 tolerated(0.2) benign(0.034) TCGA-DK-A6AW-01 12 5153765 5153765 A C KCNA5 Missense_Mutation p.K151T 0.47 deleterious(0) possibly_damaging(0.876) TCGA-DK-A6AW-01 12 51752026 51752026 G A GALNT6 Missense_Mutation p.S463L 0.47 deleterious(0) possibly_damaging(0.536) TCGA-DK-A6AW-01 12 52100304 52100304 C A SCN8A Silent p.I480I 0.44 TCGA-DK-A6AW-01 12 52163050 52163050 C T SCN8A Silent p.G1101G 0.41 TCGA-DK-A6AW-01 12 52565218 52565218 C A KRT80 Missense_Mutation p.E441D 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-DK-A6AW-01 12 52579169 52579169 C T KRT80 Missense_Mutation p.R168Q 0.44 tolerated(0.06) benign(0.184) TCGA-DK-A6AW-01 12 52647452 52647452 A C KRT7 3'Flank 0.51 TCGA-DK-A6AW-01 12 52911690 52911690 G T KRT5 Missense_Mutation p.F306L 0.44 tolerated(1) benign(0.009) TCGA-DK-A6AW-01 12 52938436 52938436 G T KRT71 Silent p.I484I 0.46 TCGA-DK-A6AW-01 12 53677195 53677195 C A ESPL1 Missense_Mutation p.L984I 0.56 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 12 53776494 53776494 A G SP1 Missense_Mutation p.N255D 0.42 deleterious(0.01) possibly_damaging(0.636) TCGA-DK-A6AW-01 12 53878053 53878053 G A MAP3K12 Silent p.Y412Y 0.33 TCGA-DK-A6AW-01 12 53881171 53881171 G A MAP3K12 Missense_Mutation p.A2V 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-A6AW-01 12 54105820 54105820 G A CALCOCO1 Missense_Mutation p.R662C 0.26 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-DK-A6AW-01 12 54379056 54379056 C T HOXC10 Missense_Mutation p.R5C 0.05 deleterious(0.01) benign(0.445) TCGA-DK-A6AW-01 12 54651351 54651351 C T CBX5 Silent p.R28R 0.36 TCGA-DK-A6AW-01 12 54741572 54741572 A C COPZ1 Silent p.A113A 0.34 TCGA-DK-A6AW-01 12 54799708 54799708 G T ITGA5 Silent p.V303V 0.33 TCGA-DK-A6AW-01 12 54911668 54911668 C T NCKAP1L Silent p.Y428Y 0.29 TCGA-DK-A6AW-01 12 54964090 54964090 G A PDE1B Silent p.R181R 0.35 TCGA-DK-A6AW-01 12 55248375 55248375 C A MUCL1 Missense_Mutation p.F3L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6AW-01 12 55367343 55367343 G A TESPA1 Intron 0.48 TCGA-DK-A6AW-01 12 55523874 55523874 A C OR9K2 Missense_Mutation p.I108L 0.48 tolerated(0.59) benign(0.001) TCGA-DK-A6AW-01 12 55863160 55863160 A G OR6C70 Missense_Mutation p.F255L 0.15 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-DK-A6AW-01 12 56096844 56096844 C T ITGA7 Missense_Mutation p.D109N 0.43 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 12 56184362 56184362 T C SARNP Missense_Mutation p.N141D 0.31 tolerated(0.17) benign(0.006) TCGA-DK-A6AW-01 12 56216913 56216913 T G DNAJC14 Missense_Mutation p.Q525H 0.37 tolerated(0.13) possibly_damaging(0.471) TCGA-DK-A6AW-01 12 56380826 56380826 G A RAB5B Missense_Mutation p.E28K 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 12 56437996 56437996 A C RPS26 3'UTR 0.34 TCGA-DK-A6AW-01 12 56563631 56563631 T G SMARCC2 Missense_Mutation p.K795T 0.47 tolerated(0.1) benign(0.015) TCGA-DK-A6AW-01 12 56575360 56575360 G A SMARCC2 Nonsense_Mutation p.R288* 0.53 TCGA-DK-A6AW-01 12 57029975 57029975 G A BAZ2A 5'UTR 0.50 TCGA-DK-A6AW-01 12 57499366 57499366 C T STAT6 Missense_Mutation p.D233N 0.42 deleterious(0.05) possibly_damaging(0.805) TCGA-DK-A6AW-01 12 57548344 57548344 G A LRP1 Missense_Mutation p.D363N 0.54 probably_damaging(0.91) TCGA-DK-A6AW-01 12 57574149 57574149 G T LRP1 Missense_Mutation p.W1758L 0.43 probably_damaging(0.997) TCGA-DK-A6AW-01 12 57592287 57592287 C T LRP1 Silent p.I3170I 0.58 TCGA-DK-A6AW-01 12 57619127 57619127 C A NXPH4 Missense_Mutation p.P175H 0.51 deleterious(0) benign(0.319) TCGA-DK-A6AW-01 12 57858609 57858609 C A GLI1 Missense_Mutation p.S116Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 12 57870188 57870188 A C ARHGAP9 Missense_Mutation p.F359V 0.45 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 58025101 58025101 G A B4GALNT1 Missense_Mutation p.L89F 0.43 tolerated(0.62) benign(0.001) TCGA-DK-A6AW-01 12 58340809 58340809 G A XRCC6BP1 Missense_Mutation p.E89K 0.48 deleterious(0) probably_damaging(0.969) TCGA-DK-A6AW-01 12 58350560 58350560 G A XRCC6BP1 Missense_Mutation p.E210K 0.56 tolerated(0.07) benign(0.446) TCGA-DK-A6AW-01 12 60165017 60165017 T C SLC16A7 Silent p.L79L 0.38 TCGA-DK-A6AW-01 12 60168882 60168882 C T SLC16A7 Missense_Mutation p.A269V 0.45 tolerated(1) possibly_damaging(0.522) TCGA-DK-A6AW-01 12 62895431 62895431 G A MON2 Missense_Mutation p.E248K 0.41 deleterious(0) probably_damaging(0.946) TCGA-DK-A6AW-01 12 63987907 63987907 G A DPY19L2 Missense_Mutation p.R514C 0.43 tolerated(0.07) benign(0.035) TCGA-DK-A6AW-01 12 64588246 64588246 T C C12orf66 Silent p.K238K 0.44 TCGA-DK-A6AW-01 12 64746779 64746779 G A C12orf56 Missense_Mutation p.R104C 0.54 tolerated(0.28) probably_damaging(0.977) TCGA-DK-A6AW-01 12 64825470 64825470 G A XPOT Missense_Mutation p.R710Q 0.23 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 6626175 6626175 G A NCAPD2 Missense_Mutation p.R390Q 0.45 deleterious(0.04) probably_damaging(0.98) TCGA-DK-A6AW-01 12 6640639 6640639 C A NCAPD2 3'UTR 0.64 TCGA-DK-A6AW-01 12 6710105 6710105 C T CHD4 Missense_Mutation p.R305H 0.47 deleterious(0.01) benign(0.083) TCGA-DK-A6AW-01 12 68720768 68720768 C A MDM1 Missense_Mutation p.R56I 0.50 deleterious(0) probably_damaging(0.984) TCGA-DK-A6AW-01 12 6927646 6927646 G A CD4 Missense_Mutation p.A406T 0.37 tolerated(0.42) benign(0.04) TCGA-DK-A6AW-01 12 70087514 70087514 G A BEST3 Missense_Mutation p.R141C 0.36 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A6AW-01 12 70794098 70794098 A G KCNMB4 Missense_Mutation p.Y149C 0.45 deleterious(0) probably_damaging(0.934) TCGA-DK-A6AW-01 12 70946755 70946755 T C PTPRB Missense_Mutation p.Y1730C 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 12 70983777 70983777 A C PTPRB Missense_Mutation p.L673V 0.49 deleterious(0.01) possibly_damaging(0.686) TCGA-DK-A6AW-01 12 71978174 71978174 T G LGR5 Missense_Mutation p.F795C 0.51 tolerated(0.18) probably_damaging(0.99) TCGA-DK-A6AW-01 12 71978489 71978489 C T LGR5 Missense_Mutation p.S900F 0.43 deleterious(0) possibly_damaging(0.905) TCGA-DK-A6AW-01 12 72057134 72057134 A C ZFC3H1 Missense_Mutation p.F86C 0.45 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-DK-A6AW-01 12 72070946 72070946 T G THAP2 3'UTR 0.41 TCGA-DK-A6AW-01 12 7241523 7241523 G A C1R Silent p.L275L 0.44 TCGA-DK-A6AW-01 12 72425082 72425082 G A TPH2 Silent p.K403K 0.45 TCGA-DK-A6AW-01 12 72667177 72667177 G A TRHDE Missense_Mutation p.G207S 0.39 tolerated(0.87) benign(0.007) TCGA-DK-A6AW-01 12 72771878 72771878 T C TRHDE Missense_Mutation p.V386A 0.52 tolerated(0.2) benign(0.335) TCGA-DK-A6AW-01 12 75601254 75601254 C A KCNC2 Missense_Mutation p.E170D 0.23 tolerated(0.56) benign(0.016) TCGA-DK-A6AW-01 12 77421679 77421679 A G E2F7 Silent p.C708C 0.41 TCGA-DK-A6AW-01 12 77421843 77421843 G T E2F7 Missense_Mutation p.H654N 0.38 tolerated(0.12) benign(0.051) TCGA-DK-A6AW-01 12 78583819 78583819 A G NAV3 Silent p.P2015P 0.47 TCGA-DK-A6AW-01 12 7882110 7882110 T G CLEC4C 3'UTR 0.33 TCGA-DK-A6AW-01 12 79611421 79611421 C A SYT1 Missense_Mutation p.S41Y 0.38 tolerated(0.06) possibly_damaging(0.61) TCGA-DK-A6AW-01 12 79813077 79813077 A G SYT1 Intron 0.46 TCGA-DK-A6AW-01 12 81102660 81102660 G A MYF6 Missense_Mutation p.R217Q 0.55 tolerated(0.32) benign(0.005) TCGA-DK-A6AW-01 12 81732974 81732974 G A PPFIA2 Nonsense_Mutation p.R845* 0.37 TCGA-DK-A6AW-01 12 81762621 81762621 C A PPFIA2 Missense_Mutation p.E455D 0.44 deleterious(0.01) probably_damaging(0.911) TCGA-DK-A6AW-01 12 8197460 8197460 C A FOXJ2 Missense_Mutation p.F241L 0.43 tolerated(0.91) benign(0.366) TCGA-DK-A6AW-01 12 85255686 85255686 G A SLC6A15 Missense_Mutation p.R640C 0.42 deleterious(0) probably_damaging(0.943) TCGA-DK-A6AW-01 12 85446011 85446011 G T LRRIQ1 Missense_Mutation p.E245D 0.30 tolerated(0.42) possibly_damaging(0.571) TCGA-DK-A6AW-01 12 85449603 85449603 G A LRRIQ1 Silent p.R344R 0.25 TCGA-DK-A6AW-01 12 85677573 85677573 C A ALX1 Silent p.V150V 0.40 TCGA-DK-A6AW-01 12 86198926 86198926 C A RASSF9 Nonsense_Mutation p.E288* 0.43 TCGA-DK-A6AW-01 12 86198958 86198958 C T RASSF9 Missense_Mutation p.R277Q 0.46 tolerated(0.42) benign(0.016) TCGA-DK-A6AW-01 12 86199580 86199580 G T RASSF9 Missense_Mutation p.L70I 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A6AW-01 12 86276249 86276249 C T NTS 3'UTR 0.55 TCGA-DK-A6AW-01 12 86374018 86374018 G A MGAT4C Silent p.H162H 0.48 TCGA-DK-A6AW-01 12 8671674 8671674 A C CLEC4D Missense_Mutation p.D101A 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 12 8687241 8687241 G T CLEC4E Missense_Mutation p.S218Y 0.29 deleterious_low_confidence(0) benign(0.099) TCGA-DK-A6AW-01 12 89985069 89985069 G A ATP2B1 Nonsense_Mutation p.R1119* 0.48 TCGA-DK-A6AW-01 12 9002303 9002303 G T A2ML1 Missense_Mutation p.K689N 0.38 deleterious(0.02) possibly_damaging(0.675) TCGA-DK-A6AW-01 12 91347869 91347869 C A CCER1 Missense_Mutation p.Q217H 0.39 deleterious(0.01) possibly_damaging(0.891) TCGA-DK-A6AW-01 12 91366725 91366725 T G EPYC Missense_Mutation p.S125R 0.37 tolerated(0.12) benign(0.009) TCGA-DK-A6AW-01 12 91450046 91450046 T C KERA Missense_Mutation p.I5V 0.45 tolerated(0.66) benign(0) TCGA-DK-A6AW-01 12 9147879 9147879 G T KLRG1 Nonsense_Mutation p.E118* 0.33 TCGA-DK-A6AW-01 12 91539749 91539749 T C DCN 3'UTR 0.52 TCGA-DK-A6AW-01 12 93163933 93163933 T G PLEKHG7 Missense_Mutation p.S368A 0.45 tolerated(0.06) benign(0.006) TCGA-DK-A6AW-01 12 93213157 93213157 T G EEA1 Missense_Mutation p.K552T 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 12 93245998 93245998 C A EEA1 Nonsense_Mutation p.E199* 0.47 TCGA-DK-A6AW-01 12 9349179 9349179 C A PZP Nonsense_Mutation p.E324* 0.44 TCGA-DK-A6AW-01 12 9356466 9356466 C T PZP Silent p.E55E 0.43 TCGA-DK-A6AW-01 12 9393012 9393012 G A LINC00987 RNA 0.40 TCGA-DK-A6AW-01 12 94763806 94763806 C A CCDC41 Nonsense_Mutation p.E314* 0.40 TCGA-DK-A6AW-01 12 94976302 94976302 C A TMCC3 Missense_Mutation p.D31Y 0.48 deleterious(0) possibly_damaging(0.867) TCGA-DK-A6AW-01 12 95531306 95531306 C T FGD6 Missense_Mutation p.E996K 0.47 tolerated(0.06) benign(0.158) TCGA-DK-A6AW-01 12 95889872 95889872 A C METAP2 Missense_Mutation p.K289Q 0.41 deleterious(0) possibly_damaging(0.86) TCGA-DK-A6AW-01 12 95906667 95906667 T G METAP2 Missense_Mutation p.F387V 0.40 tolerated(0.17) probably_damaging(0.948) TCGA-DK-A6AW-01 12 960933 960933 G T WNK1 Intron 0.44 TCGA-DK-A6AW-01 12 96360280 96360280 C A AMDHD1 Nonsense_Mutation p.S396* 0.41 TCGA-DK-A6AW-01 12 96407592 96407592 A C LTA4H Missense_Mutation p.F415C 0.35 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 12 97137338 97137338 G A C12orf55 Splice_Site p.X2459_splice 0.35 TCGA-DK-A6AW-01 12 97158891 97158891 G T C12orf55 Nonsense_Mutation p.G2726* 0.39 TCGA-DK-A6AW-01 12 9750658 9750658 A C KLRB1 Missense_Mutation p.F172V 0.47 tolerated(0.44) possibly_damaging(0.852) TCGA-DK-A6AW-01 12 988795 988795 G A WNK1 Silent p.A810A 0.36 TCGA-DK-A6AW-01 12 99008055 99008055 G A IKBIP Missense_Mutation p.R121C 0.48 tolerated(0.07) benign(0.401) TCGA-DK-A6AW-01 12 9906025 9906025 G T CD69 3'UTR 0.50 TCGA-DK-A6AW-01 12 99201646 99201646 G A ANKS1B Intron 0.46 TCGA-DK-A6AW-01 12 99640604 99640604 C A ANKS1B Nonsense_Mutation p.E599* 0.47 TCGA-DK-A6AW-01 13 100925518 100925518 A C PCCA Missense_Mutation p.K328T 0.41 deleterious(0.02) benign(0.005) TCGA-DK-A6AW-01 13 101294550 101294550 G A TMTC4 Missense_Mutation p.A219V 0.42 tolerated(0.28) benign(0.006) TCGA-DK-A6AW-01 13 103053916 103053916 T G FGF14 Missense_Mutation p.K38T 0.46 deleterious(0.02) benign(0.058) TCGA-DK-A6AW-01 13 103054020 103054020 T C FGF14 Silent p.K3K 0.39 TCGA-DK-A6AW-01 13 103279451 103279451 C A TPP2 Missense_Mutation p.L292I 0.47 tolerated(0.81) benign(0.248) TCGA-DK-A6AW-01 13 103338671 103338671 C A METTL21C Nonsense_Mutation p.E169* 0.50 TCGA-DK-A6AW-01 13 103504585 103504585 G A BIVM-ERCC5 Missense_Mutation p.R495Q 0.43 deleterious(0.01) probably_damaging(0.947) TCGA-DK-A6AW-01 13 103515212 103515212 G A BIVM-ERCC5 Silent p.P997P 0.45 TCGA-DK-A6AW-01 13 103705043 103705043 G T SLC10A2 Missense_Mutation p.S171Y 0.33 deleterious(0.01) benign(0.063) TCGA-DK-A6AW-01 13 108518060 108518060 G T FAM155A Nonsense_Mutation p.Y295* 0.44 TCGA-DK-A6AW-01 13 108861081 108861081 G A LIG4 Missense_Mutation p.R846W 0.56 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 13 108882542 108882542 G A ABHD13 Missense_Mutation p.E326K 0.59 tolerated(0.19) benign(0.003) TCGA-DK-A6AW-01 13 108959325 108959325 C A TNFSF13B 3'UTR 0.56 TCGA-DK-A6AW-01 13 109318376 109318376 G T MYO16 Missense_Mutation p.E35D 0.34 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 13 109672112 109672112 A C MYO16 Silent p.S861S 0.45 TCGA-DK-A6AW-01 13 109753191 109753191 C T MYO16 Nonsense_Mutation p.R1110* 0.39 TCGA-DK-A6AW-01 13 111287836 111287836 G T CARKD Missense_Mutation p.D225Y 0.42 deleterious(0.03) possibly_damaging(0.814) TCGA-DK-A6AW-01 13 115090580 115090580 A G CHAMP1 Silent p.K421K 0.43 TCGA-DK-A6AW-01 13 19999111 19999111 T C TPTE2 Missense_Mutation p.N481S 0.32 deleterious(0.01) possibly_damaging(0.567) TCGA-DK-A6AW-01 13 20411662 20411662 T G ZMYM5 3'UTR 0.27 TCGA-DK-A6AW-01 13 21306051 21306051 G A N6AMT2 Missense_Mutation p.S146L 0.52 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 13 21396422 21396422 G A XPO4 Nonsense_Mutation p.R283* 0.44 TCGA-DK-A6AW-01 13 21442798 21442798 C T XPO4 Missense_Mutation p.E38K 0.42 deleterious(0.01) possibly_damaging(0.907) TCGA-DK-A6AW-01 13 21553890 21553890 G A LATS2 Silent p.F904F 0.33 TCGA-DK-A6AW-01 13 21562107 21562107 G A LATS2 Silent p.F604F 0.37 TCGA-DK-A6AW-01 13 21742233 21742233 A C SKA3 Missense_Mutation p.F213V 0.42 deleterious(0.01) probably_damaging(0.963) TCGA-DK-A6AW-01 13 22084212 22084212 T C MICU2 Missense_Mutation p.N231S 0.54 tolerated(0.1) benign(0.019) TCGA-DK-A6AW-01 13 22275446 22275446 A G FGF9 Missense_Mutation p.N167D 0.39 tolerated(0.09) probably_damaging(0.968) TCGA-DK-A6AW-01 13 23915006 23915006 A C SACS Missense_Mutation p.F1003L 0.45 benign(0.033) TCGA-DK-A6AW-01 13 24443568 24443568 T G MIPEP Missense_Mutation p.K269T 0.23 deleterious(0) possibly_damaging(0.875) TCGA-DK-A6AW-01 13 24465656 24465656 G T C1QTNF9B Missense_Mutation p.F258L 0.11 tolerated(0.06) benign(0.049) TCGA-DK-A6AW-01 13 24465742 24465742 C T C1QTNF9B Missense_Mutation p.E230K 0.26 tolerated(0.09) benign(0.03) TCGA-DK-A6AW-01 13 24465903 24465903 C T C1QTNF9B Missense_Mutation p.G176E 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 13 24895431 24895431 G A AL359736.1 Missense_Mutation p.P46S 0.22 deleterious(0) probably_damaging(0.986) TCGA-DK-A6AW-01 13 24895592 24895592 G A C1QTNF9 Missense_Mutation p.E230K 0.15 tolerated(0.11) benign(0.007) TCGA-DK-A6AW-01 13 24895678 24895678 C A C1QTNF9 Missense_Mutation p.F258L 0.42 tolerated(0.46) benign(0.075) TCGA-DK-A6AW-01 13 25027774 25027774 G A PARP4 Missense_Mutation p.S926L 0.41 tolerated(0.15) benign(0.168) TCGA-DK-A6AW-01 13 25376685 25376685 C T RNF17 Missense_Mutation p.A642V 0.44 deleterious(0.01) benign(0.049) TCGA-DK-A6AW-01 13 25453351 25453351 A G RNF17 Silent p.T1600T 0.42 TCGA-DK-A6AW-01 13 25458348 25458348 C T CENPJ Silent p.T1218T 0.51 TCGA-DK-A6AW-01 13 25823333 25823333 C A MTMR6 3'UTR 0.31 TCGA-DK-A6AW-01 13 25823574 25823574 T C MTMR6 Silent p.L554L 0.46 TCGA-DK-A6AW-01 13 26125475 26125475 G T ATP8A2 Splice_Site p.X298_splice 0.33 TCGA-DK-A6AW-01 13 29855969 29855969 C A MTUS2 Missense_Mutation p.L935I 0.49 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A6AW-01 13 31233466 31233466 C T USPL1 Silent p.F1084F 0.43 TCGA-DK-A6AW-01 13 31725762 31725762 T C HSPH1 Missense_Mutation p.N216S 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 13 31729689 31729689 C T HSPH1 Missense_Mutation p.D90N 0.32 tolerated(0.21) benign(0.326) TCGA-DK-A6AW-01 13 32721489 32721489 G A FRY Missense_Mutation p.R417Q 0.46 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 13 32914877 32914877 G T BRCA2 Nonsense_Mutation p.E2129* 0.52 TCGA-DK-A6AW-01 13 32954154 32954154 A C BRCA2 Missense_Mutation p.E3043A 0.56 deleterious(0.01) possibly_damaging(0.796) TCGA-DK-A6AW-01 13 33110633 33110633 C A N4BP2L2 Intron 0.36 TCGA-DK-A6AW-01 13 33349165 33349165 G A PDS5B Missense_Mutation p.R1440Q 0.48 deleterious_low_confidence(0.03) unknown(0) TCGA-DK-A6AW-01 13 33635145 33635145 G A KL Silent p.P643P 0.43 TCGA-DK-A6AW-01 13 33635228 33635228 G A KL Missense_Mutation p.R671Q 0.51 tolerated(0.53) benign(0.294) TCGA-DK-A6AW-01 13 35782858 35782858 G T NBEA Missense_Mutation p.K1796N 0.48 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DK-A6AW-01 13 36348799 36348799 C T DCLK1 Missense_Mutation p.E724K 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6AW-01 13 36402403 36402403 C A DCLK1 Missense_Mutation p.S424I 0.46 tolerated(0.14) possibly_damaging(0.607) TCGA-DK-A6AW-01 13 36445359 36445359 A G DCLK1 Splice_Site p.X314_splice 0.38 TCGA-DK-A6AW-01 13 36764174 36764174 C A SOHLH2 Missense_Mutation p.G261C 0.38 deleterious(0) possibly_damaging(0.72) TCGA-DK-A6AW-01 13 37269425 37269425 C A SERTM1 Silent p.I70I 0.48 TCGA-DK-A6AW-01 13 38154010 38154010 C A POSTN Nonsense_Mutation p.E550* 0.42 TCGA-DK-A6AW-01 13 38211175 38211175 C A TRPC4 Missense_Mutation p.E938D 0.42 tolerated_low_confidence(0.11) benign(0.005) TCGA-DK-A6AW-01 13 38225498 38225498 C T TRPC4 Silent p.P661P 0.41 TCGA-DK-A6AW-01 13 38266470 38266470 A C TRPC4 Missense_Mutation p.F300L 0.29 deleterious(0) probably_damaging(0.963) TCGA-DK-A6AW-01 13 38320181 38320181 C A TRPC4 Nonsense_Mutation p.E264* 0.44 TCGA-DK-A6AW-01 13 38357147 38357147 G A TRPC4 Silent p.V108V 0.32 TCGA-DK-A6AW-01 13 39263354 39263354 C A FREM2 Missense_Mutation p.L625I 0.46 tolerated(0.4) benign(0) TCGA-DK-A6AW-01 13 42739566 42739566 G A DGKH Missense_Mutation p.D319N 0.48 deleterious(0.03) possibly_damaging(0.734) TCGA-DK-A6AW-01 13 43798219 43798219 A C ENOX1 Silent p.L590L 0.45 TCGA-DK-A6AW-01 13 43900590 43900590 G A ENOX1 Missense_Mutation p.R370C 0.45 deleterious(0) probably_damaging(0.959) TCGA-DK-A6AW-01 13 44455474 44455474 T G LACC1 Missense_Mutation p.F118C 0.45 deleterious(0) probably_damaging(0.91) TCGA-DK-A6AW-01 13 45150116 45150116 C A TSC22D1 Missense_Mutation p.G32V 0.64 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 13 45973125 45973125 G A SLC25A30 Nonsense_Mutation p.R235* 0.40 TCGA-DK-A6AW-01 13 46287863 46287863 G A SPERT Missense_Mutation p.A235T 0.43 tolerated(0.23) benign(0.019) TCGA-DK-A6AW-01 13 46722489 46722489 G A LCP1 Missense_Mutation p.R326W 0.44 deleterious(0.01) possibly_damaging(0.791) TCGA-DK-A6AW-01 13 46942916 46942916 C T KIAA0226L Silent p.S190S 0.45 TCGA-DK-A6AW-01 13 48562693 48562693 T G SUCLA2 Missense_Mutation p.M173L 0.41 tolerated(0.31) benign(0.068) TCGA-DK-A6AW-01 13 48833030 48833030 G A ITM2B Missense_Mutation p.R221Q 0.11 tolerated(0.43) possibly_damaging(0.834) TCGA-DK-A6AW-01 13 49772296 49772296 C T FNDC3A Missense_Mutation p.S890L 0.40 deleterious(0) benign(0.259) TCGA-DK-A6AW-01 13 50050683 50050683 C T SETDB2 Missense_Mutation p.S138L 0.38 tolerated(1) benign(0) TCGA-DK-A6AW-01 13 50293913 50293913 T A KPNA3 Missense_Mutation p.N257Y 0.56 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A6AW-01 13 51936199 51936199 C T SERPINE3 3'UTR 0.39 TCGA-DK-A6AW-01 13 52602795 52602795 C A UTP14C 5'UTR 0.46 TCGA-DK-A6AW-01 13 52646086 52646086 C T NEK5 Missense_Mutation p.E640K 0.44 tolerated(0.17) benign(0.051) TCGA-DK-A6AW-01 13 52649953 52649953 T G NEK5 Missense_Mutation p.K580Q 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-DK-A6AW-01 13 52660445 52660445 C A NEK5 Nonsense_Mutation p.E483* 0.41 TCGA-DK-A6AW-01 13 53254191 53254191 G T SUGT1 Missense_Mutation p.K299N 0.43 deleterious(0) possibly_damaging(0.823) TCGA-DK-A6AW-01 13 58208341 58208341 C T PCDH17 Missense_Mutation p.A554V 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 13 61985557 61985557 G A PCDH20 Missense_Mutation p.A892V 0.84 tolerated(0.09) benign(0.006) TCGA-DK-A6AW-01 13 67802243 67802243 G T PCDH9 Missense_Mutation p.F110L 0.52 deleterious(0.01) possibly_damaging(0.734) TCGA-DK-A6AW-01 13 67802500 67802500 C A PCDH9 Nonsense_Mutation p.E25* 0.49 TCGA-DK-A6AW-01 13 70413259 70413259 C T KLHL1 Silent p.K421K 0.41 TCGA-DK-A6AW-01 13 72134059 72134059 G A DACH1 Missense_Mutation p.A445V 0.44 benign(0.395) TCGA-DK-A6AW-01 13 73351596 73351596 C T DIS3 Missense_Mutation p.E206K 0.38 tolerated(0.33) benign(0.071) TCGA-DK-A6AW-01 13 75900457 75900457 G A TBC1D4 Nonsense_Mutation p.R637* 0.58 TCGA-DK-A6AW-01 13 76055417 76055417 C A TBC1D4 Missense_Mutation p.D163Y 0.57 deleterious(0.03) possibly_damaging(0.905) TCGA-DK-A6AW-01 13 76407225 76407225 G A LMO7 Silent p.T763T 0.41 TCGA-DK-A6AW-01 13 77581686 77581686 A C FBXL3 Missense_Mutation p.F294C 0.58 deleterious(0) possibly_damaging(0.907) TCGA-DK-A6AW-01 13 77581816 77581816 G A FBXL3 Nonsense_Mutation p.R251* 0.93 TCGA-DK-A6AW-01 13 77641780 77641780 T C MYCBP2 Missense_Mutation p.T4093A 0.50 benign(0.005) TCGA-DK-A6AW-01 13 77641954 77641954 G A MYCBP2 Missense_Mutation p.R4035C 0.42 benign(0.186) TCGA-DK-A6AW-01 13 78130828 78130828 G T SCEL Missense_Mutation p.K47N 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 13 78335218 78335218 G A SLAIN1 Missense_Mutation p.R393Q 0.51 deleterious(0) possibly_damaging(0.776) TCGA-DK-A6AW-01 13 79951555 79951555 C A RBM26 Nonsense_Mutation p.E96* 0.59 TCGA-DK-A6AW-01 13 80910960 80910960 T G SPRY2 Missense_Mutation p.K294T 0.40 deleterious(0.01) possibly_damaging(0.639) TCGA-DK-A6AW-01 13 84454044 84454044 G T SLITRK1 Nonsense_Mutation p.C533* 0.49 TCGA-DK-A6AW-01 13 84454169 84454169 C T SLITRK1 Missense_Mutation p.A492T 0.48 tolerated(0.21) benign(0.083) TCGA-DK-A6AW-01 13 86369440 86369440 G T SLITRK6 Missense_Mutation p.L402I 0.49 tolerated(1) benign(0.036) TCGA-DK-A6AW-01 13 88328647 88328647 G A SLITRK5 Missense_Mutation p.R335H 0.45 deleterious(0) probably_damaging(0.943) TCGA-DK-A6AW-01 13 88329725 88329725 G T SLITRK5 Missense_Mutation p.K694N 0.40 deleterious(0.02) benign(0.41) TCGA-DK-A6AW-01 13 92345783 92345783 G A GPC5 Missense_Mutation p.R223H 0.45 deleterious(0.04) probably_damaging(0.994) TCGA-DK-A6AW-01 13 92345972 92345972 C T GPC5 Missense_Mutation p.A286V 0.46 tolerated(0.37) benign(0.078) TCGA-DK-A6AW-01 13 95034697 95034697 C T GPC6 Silent p.L394L 0.41 TCGA-DK-A6AW-01 13 95230273 95230273 C A TGDS Nonsense_Mutation p.E271* 0.51 TCGA-DK-A6AW-01 13 96086260 96086260 C A CLDN10 Missense_Mutation p.S58Y 0.40 deleterious(0) possibly_damaging(0.637) TCGA-DK-A6AW-01 13 96237101 96237101 T G DZIP1 Missense_Mutation p.K805Q 0.41 tolerated(0.06) benign(0.025) TCGA-DK-A6AW-01 13 96238296 96238296 C T DZIP1 Silent p.E771E 0.50 TCGA-DK-A6AW-01 13 96439348 96439348 G T DNAJC3 Missense_Mutation p.K432N 0.50 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 13 96579575 96579575 G A UGGT2 Missense_Mutation p.R665C 0.40 tolerated(0.06) benign(0.28) TCGA-DK-A6AW-01 13 96665684 96665684 C A UGGT2 Missense_Mutation p.E179D 0.44 tolerated(0.32) benign(0.053) TCGA-DK-A6AW-01 13 99535366 99535366 A C DOCK9 Missense_Mutation p.F830C 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 13 99667817 99667817 C T DOCK9 Missense_Mutation p.V16I 0.39 tolerated_low_confidence(0.4) benign(0.003) TCGA-DK-A6AW-01 14 100165802 100165802 G T CYP46A1 Splice_Site p.X95_splice 0.46 TCGA-DK-A6AW-01 14 100192559 100192559 G A CYP46A1 Missense_Mutation p.G433D 0.57 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 14 101201227 101201227 G T DLK1 Missense_Mutation p.E382D 0.48 tolerated_low_confidence(0.29) benign(0.011) TCGA-DK-A6AW-01 14 101492149 101492149 C A MIR323A RNA 0.48 TCGA-DK-A6AW-01 14 101515974 101515974 T G MIR655 RNA 0.38 TCGA-DK-A6AW-01 14 103568508 103568508 G A EXOC3L4 Missense_Mutation p.E150K 0.47 tolerated(0.46) benign(0.008) TCGA-DK-A6AW-01 14 103933458 103933458 A C MARK3 Missense_Mutation p.E347A 0.08 tolerated(0.06) benign(0.038) TCGA-DK-A6AW-01 14 103986344 103986344 C T CKB Missense_Mutation p.D335N 0.55 deleterious(0) probably_damaging(0.977) TCGA-DK-A6AW-01 14 105407438 105407438 G T AHNAK2 Missense_Mutation p.L4784I 0.41 possibly_damaging(0.854) TCGA-DK-A6AW-01 14 105410001 105410001 A G AHNAK2 Silent p.V3929V 0.44 TCGA-DK-A6AW-01 14 105413831 105413831 A G AHNAK2 Missense_Mutation p.F2653L 0.42 possibly_damaging(0.58) TCGA-DK-A6AW-01 14 106110012 106110012 G A IGHG2 Silent p.V202V 0.41 TCGA-DK-A6AW-01 14 106173634 106173634 G T IGHA1 Missense_Mutation p.F311L 0.23 deleterious(0.01) possibly_damaging(0.847) TCGA-DK-A6AW-01 14 106641745 106641745 G A IGHV1-18 Nonsense_Mutation p.R57* 0.46 TCGA-DK-A6AW-01 14 106829813 106829813 G T IGHV4-34 Silent p.V50V 0.38 TCGA-DK-A6AW-01 14 106866645 106866645 G A IGHV3-38 Silent p.L37L 0.47 TCGA-DK-A6AW-01 14 19553786 19553786 G A POTEG Missense_Mutation p.D124N 0.08 deleterious(0.03) benign(0.233) TCGA-DK-A6AW-01 14 20002290 20002290 C A POTEM Missense_Mutation p.D378Y 0.31 deleterious(0.03) possibly_damaging(0.819) TCGA-DK-A6AW-01 14 20345219 20345219 T G OR4K2 Missense_Mutation p.F265V 0.23 tolerated(0.08) possibly_damaging(0.7) TCGA-DK-A6AW-01 14 20404494 20404494 C T OR4K1 Silent p.I223I 0.21 TCGA-DK-A6AW-01 14 20404621 20404621 C T OR4K1 Missense_Mutation p.P266S 0.27 tolerated(0.73) benign(0.003) TCGA-DK-A6AW-01 14 20404748 20404748 C T OR4K1 Missense_Mutation p.S308F 0.26 tolerated(0.1) benign(0.004) TCGA-DK-A6AW-01 14 20666250 20666250 T G OR11G2 Missense_Mutation p.I252M 0.40 deleterious(0.01) possibly_damaging(0.844) TCGA-DK-A6AW-01 14 20871889 20871889 C T TEP1 Missense_Mutation p.R396H 0.45 tolerated(0.11) benign(0.081) TCGA-DK-A6AW-01 14 21238401 21238401 G T EDDM3B Missense_Mutation p.R31I 0.50 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 14 21624049 21624049 C T OR5AU1 Missense_Mutation p.A46T 0.54 tolerated(0.39) benign(0) TCGA-DK-A6AW-01 14 21971461 21971461 G A METTL3 Missense_Mutation p.S193L 0.39 tolerated(0.36) benign(0.012) TCGA-DK-A6AW-01 14 22356592 22356592 G T TRAV12-2 Missense_Mutation p.A84S 0.46 deleterious(0) benign(0.408) TCGA-DK-A6AW-01 14 22475806 22475806 G T TRAV19 5'UTR 0.44 TCGA-DK-A6AW-01 14 22573869 22573869 C A TRAV24 Missense_Mutation p.P30H 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 14 22631197 22631197 G A TRAV29DV5 5'UTR 0.36 TCGA-DK-A6AW-01 14 23370784 23370784 C A RBM23 3'UTR 0.40 TCGA-DK-A6AW-01 14 23424386 23424386 C T HAUS4 Splice_Site 0.41 TCGA-DK-A6AW-01 14 23511601 23511601 G A PSMB11 Missense_Mutation p.R56H 0.45 deleterious(0.03) probably_damaging(0.912) TCGA-DK-A6AW-01 14 23830024 23830024 G T EFS Missense_Mutation p.L13M 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 14 23874978 23874978 G A MYH6 Missense_Mutation p.T68M 0.45 deleterious(0.04) probably_damaging(0.964) TCGA-DK-A6AW-01 14 24606623 24606623 C T PSME1 Missense_Mutation p.R77W 0.44 tolerated(0.05) benign(0.003) TCGA-DK-A6AW-01 14 24641958 24641958 C T REC8 Silent p.R31R 0.43 TCGA-DK-A6AW-01 14 24683326 24683326 C A MDP1 Missense_Mutation p.M145I 0.38 tolerated(0.31) benign(0.13) TCGA-DK-A6AW-01 14 25076861 25076861 G A GZMH Missense_Mutation p.A99V 0.41 deleterious(0.03) benign(0.118) TCGA-DK-A6AW-01 14 29237124 29237124 G T FOXG1 Missense_Mutation p.K213N 0.32 tolerated(0.1) possibly_damaging(0.574) TCGA-DK-A6AW-01 14 31097440 31097440 C A SCFD1 Missense_Mutation p.F29L 0.45 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 14 31349664 31349664 G A COCH Missense_Mutation p.R148Q 0.49 deleterious(0.04) benign(0.089) TCGA-DK-A6AW-01 14 31647240 31647240 C T HECTD1 Missense_Mutation p.E121K 0.38 deleterious(0) probably_damaging(0.991) TCGA-DK-A6AW-01 14 31762702 31762702 G A RP11-596D21.1 Intron 0.46 TCGA-DK-A6AW-01 14 31790851 31790851 G A HEATR5A Missense_Mutation p.R1275C 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 14 31922499 31922499 C A DTD2 Nonsense_Mutation p.E55* 0.41 TCGA-DK-A6AW-01 14 32031311 32031311 G T NUBPL Missense_Mutation p.R49I 0.41 deleterious(0.01) possibly_damaging(0.646) TCGA-DK-A6AW-01 14 32562225 32562225 G A ARHGAP5 Missense_Mutation p.A784T 0.38 tolerated(0.17) benign(0.18) TCGA-DK-A6AW-01 14 33015288 33015288 G T AKAP6 Nonsense_Mutation p.E477* 0.48 TCGA-DK-A6AW-01 14 33293276 33293276 C A AKAP6 Nonsense_Mutation p.S2086* 0.53 TCGA-DK-A6AW-01 14 34270183 34270183 C T NPAS3 Silent p.S890S 0.50 TCGA-DK-A6AW-01 14 35554882 35554882 C T PPP2R3C Missense_Mutation p.D426N 0.39 deleterious(0) probably_damaging(0.974) TCGA-DK-A6AW-01 14 36840679 36840679 G T DPPA3P2 RNA 0.57 TCGA-DK-A6AW-01 14 39716561 39716561 G T MIA2 Missense_Mutation p.E261D 0.41 tolerated(0.07) possibly_damaging(0.851) TCGA-DK-A6AW-01 14 39721990 39721990 G A MIA2 Missense_Mutation p.E536K 0.38 tolerated(0.08) benign(0.039) TCGA-DK-A6AW-01 14 42356315 42356315 C T LRFN5 Missense_Mutation p.P163S 0.57 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 14 42360920 42360920 C T LRFN5 Missense_Mutation p.S618L 0.47 tolerated_low_confidence(0.21) benign(0.073) TCGA-DK-A6AW-01 14 45400552 45400552 C A KLHL28 Missense_Mutation p.M512I 0.50 deleterious(0) probably_damaging(0.991) TCGA-DK-A6AW-01 14 45432826 45432826 A C FAM179B Missense_Mutation p.N401T 0.54 tolerated(0.32) benign(0.038) TCGA-DK-A6AW-01 14 45497527 45497527 C T FAM179B Missense_Mutation p.S1218F 0.37 deleterious(0.01) benign(0.188) TCGA-DK-A6AW-01 14 45645449 45645449 A C FANCM Missense_Mutation p.K1164N 0.40 deleterious(0.01) benign(0.372) TCGA-DK-A6AW-01 14 45716144 45716144 G T MIS18BP1 Missense_Mutation p.L116I 0.40 deleterious(0) benign(0.002) TCGA-DK-A6AW-01 14 50101381 50101381 T G DNAAF2 Missense_Mutation p.M163L 0.43 tolerated(0.11) probably_damaging(0.945) TCGA-DK-A6AW-01 14 50295770 50295770 A G NEMF Splice_Site p.X411_splice 0.44 TCGA-DK-A6AW-01 14 50459563 50459563 T C C14orf182 Missense_Mutation p.K79E 0.33 tolerated_low_confidence(0.06) benign(0.031) TCGA-DK-A6AW-01 14 50585159 50585159 T G SOS2 Missense_Mutation p.H1301P 0.45 tolerated_low_confidence(0.12) benign(0) TCGA-DK-A6AW-01 14 51211068 51211068 C T NIN Missense_Mutation p.D1694N 0.42 deleterious(0.03) benign(0.041) TCGA-DK-A6AW-01 14 52182214 52182214 G A FRMD6 Missense_Mutation p.E341K 0.46 tolerated(0.1) benign(0.439) TCGA-DK-A6AW-01 14 52781609 52781609 G A PTGER2 Missense_Mutation p.A115T 0.53 tolerated(0.22) benign(0.016) TCGA-DK-A6AW-01 14 52899117 52899117 G A TXNDC16 Silent p.L795L 0.58 TCGA-DK-A6AW-01 14 53386026 53386026 C A FERMT2 Missense_Mutation p.R69I 0.49 tolerated(0.16) benign(0.006) TCGA-DK-A6AW-01 14 54418770 54418770 G A BMP4 Silent p.F57F 0.45 TCGA-DK-A6AW-01 14 54976772 54976772 T C CGRRF1 Missense_Mutation p.V32A 0.50 deleterious(0) benign(0.446) TCGA-DK-A6AW-01 14 54997667 54997667 G T CGRRF1 Missense_Mutation p.D157Y 0.44 deleterious(0.01) possibly_damaging(0.863) TCGA-DK-A6AW-01 14 56139399 56139399 G A KTN1 Missense_Mutation p.E1195K 0.42 deleterious(0.04) benign(0.089) TCGA-DK-A6AW-01 14 56146393 56146393 C A KTN1 Nonsense_Mutation p.Y1353* 0.48 TCGA-DK-A6AW-01 14 56233531 56233531 C T RP11-813I20.2 Intron 0.38 TCGA-DK-A6AW-01 14 57099767 57099767 G T TMEM260 Missense_Mutation p.K534N 0.58 tolerated(0.25) benign(0.058) TCGA-DK-A6AW-01 14 57710900 57710900 A C EXOC5 Missense_Mutation p.F150V 0.30 deleterious(0) possibly_damaging(0.775) TCGA-DK-A6AW-01 14 57711056 57711056 C A EXOC5 Nonsense_Mutation p.E98* 0.54 TCGA-DK-A6AW-01 14 58605794 58605794 C A C14orf37 Nonsense_Mutation p.E95* 0.55 TCGA-DK-A6AW-01 14 59930837 59930837 C T GPR135 Missense_Mutation p.V370M 0.44 deleterious(0.02) probably_damaging(0.974) TCGA-DK-A6AW-01 14 59965548 59965548 C T JKAMP Nonsense_Mutation p.R188* 0.38 TCGA-DK-A6AW-01 14 60194328 60194328 G A RTN1 Silent p.T358T 0.48 TCGA-DK-A6AW-01 14 60212987 60212987 C A RTN1 Missense_Mutation p.D152Y 0.49 deleterious(0) possibly_damaging(0.907) TCGA-DK-A6AW-01 14 60925416 60925416 C A C14orf39 Nonsense_Mutation p.E387* 0.56 TCGA-DK-A6AW-01 14 61113285 61113285 C T SIX1 Missense_Mutation p.E191K 0.43 tolerated(0.37) benign(0.154) TCGA-DK-A6AW-01 14 61189977 61189977 C A SIX4 Missense_Mutation p.K272N 0.45 deleterious(0) possibly_damaging(0.501) TCGA-DK-A6AW-01 14 61278769 61278769 G T MNAT1 Missense_Mutation p.R162I 0.37 deleterious(0.03) probably_damaging(1) TCGA-DK-A6AW-01 14 62207246 62207246 T C HIF1A Silent p.C544C 0.38 TCGA-DK-A6AW-01 14 63174447 63174447 C T KCNH5 Missense_Mutation p.E916K 0.43 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DK-A6AW-01 14 63179343 63179343 C T KCNH5 Intron 0.62 TCGA-DK-A6AW-01 14 63417103 63417103 A G KCNH5 Missense_Mutation p.Y373H 0.31 tolerated(0.18) benign(0.09) TCGA-DK-A6AW-01 14 64486747 64486747 T G SYNE2 Missense_Mutation p.F1696C 0.51 probably_damaging(0.957) TCGA-DK-A6AW-01 14 64637085 64637085 C T SYNE2 Missense_Mutation p.R5714C 0.48 probably_damaging(0.96) TCGA-DK-A6AW-01 14 65008103 65008103 C T HSPA2 Missense_Mutation p.A179V 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A6AW-01 14 68250041 68250041 C T ZFYVE26 Silent p.P1276P 0.45 TCGA-DK-A6AW-01 14 70633745 70633745 G A SLC8A3 Silent p.S465S 0.45 TCGA-DK-A6AW-01 14 70712670 70712670 C A ADAM21P1 RNA 0.35 TCGA-DK-A6AW-01 14 70713048 70713048 C T ADAM21P1 RNA 0.46 TCGA-DK-A6AW-01 14 70842468 70842468 C A SYNJ2BP Missense_Mutation p.K74N 0.44 deleterious(0.02) possibly_damaging(0.472) TCGA-DK-A6AW-01 14 72137973 72137973 C T SIPA1L1 Missense_Mutation p.S798L 0.41 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 14 72152124 72152124 G T SIPA1L1 Missense_Mutation p.M1050I 0.10 tolerated(0.2) benign(0.001) TCGA-DK-A6AW-01 14 73686160 73686160 A C PSEN1 3'UTR 0.42 TCGA-DK-A6AW-01 14 74035846 74035846 T G ACOT2 5'UTR 0.44 TCGA-DK-A6AW-01 14 74179220 74179220 C T PNMA1 3'UTR 0.39 TCGA-DK-A6AW-01 14 74404384 74404384 G A FAM161B Missense_Mutation p.A592V 0.44 tolerated(0.29) benign(0.031) TCGA-DK-A6AW-01 14 74874581 74874581 C T SYNDIG1L Missense_Mutation p.G177S 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 14 75138126 75138126 A C AREL1 Missense_Mutation p.F495V 0.47 deleterious(0) probably_damaging(0.968) TCGA-DK-A6AW-01 14 75276132 75276132 C A YLPM1 Nonsense_Mutation p.S1524* 0.70 TCGA-DK-A6AW-01 14 75415253 75415253 A C PGF Missense_Mutation p.Y117D 0.26 deleterious(0) probably_damaging(0.972) TCGA-DK-A6AW-01 14 75513214 75513214 C T MLH3 Missense_Mutation p.D1049N 0.48 deleterious(0) probably_damaging(0.929) TCGA-DK-A6AW-01 14 75514530 75514530 G A MLH3 Missense_Mutation p.T610I 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-DK-A6AW-01 14 76101275 76101275 G T FLVCR2 Missense_Mutation p.R348I 0.49 deleterious(0) possibly_damaging(0.507) TCGA-DK-A6AW-01 14 76112899 76112899 G A FLVCR2 3'UTR 0.41 TCGA-DK-A6AW-01 14 76211873 76211873 G A TTLL5 Missense_Mutation p.R479Q 0.29 deleterious(0) benign(0.19) TCGA-DK-A6AW-01 14 76232590 76232590 G T TTLL5 Nonsense_Mutation p.E632* 0.36 TCGA-DK-A6AW-01 14 76446913 76446913 G A TGFB3 Silent p.F108F 0.42 TCGA-DK-A6AW-01 14 77319687 77319687 C T C14orf166B Silent p.I314I 0.44 TCGA-DK-A6AW-01 14 77491791 77491791 G T IRF2BPL Missense_Mutation p.T782N 0.40 deleterious(0) unknown(0) TCGA-DK-A6AW-01 14 77605614 77605614 G A ZDHHC22 Silent p.F156F 0.44 TCGA-DK-A6AW-01 14 77691805 77691805 G T TMEM63C Splice_Site p.X117_splice 0.42 TCGA-DK-A6AW-01 14 77715770 77715770 C A TMEM63C Missense_Mutation p.F669L 0.44 deleterious(0.05) benign(0.068) TCGA-DK-A6AW-01 14 77844276 77844276 C T SAMD15 Missense_Mutation p.S172L 0.50 tolerated(0.34) benign(0) TCGA-DK-A6AW-01 14 77872299 77872299 C A NOXRED1 Missense_Mutation p.D288Y 0.40 deleterious(0.05) probably_damaging(0.932) TCGA-DK-A6AW-01 14 77941946 77941946 C T ISM2 Missense_Mutation p.E570K 0.40 deleterious(0) unknown(0) TCGA-DK-A6AW-01 14 80669091 80669091 G A DIO2 Missense_Mutation p.R291W 0.39 deleterious(0) possibly_damaging(0.857) TCGA-DK-A6AW-01 14 81259149 81259149 C A CEP128 Missense_Mutation p.E505D 0.39 tolerated(0.07) benign(0.057) TCGA-DK-A6AW-01 14 81743820 81743820 C T STON2 Missense_Mutation p.R612H 0.42 tolerated(0.37) benign(0.105) TCGA-DK-A6AW-01 14 81972532 81972532 G T SEL1L Missense_Mutation p.L132I 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.856) TCGA-DK-A6AW-01 14 86089948 86089948 G A FLRT2 3'UTR 0.31 TCGA-DK-A6AW-01 14 88477991 88477991 G A GPR65 Missense_Mutation p.R267Q 0.50 tolerated(0.71) benign(0.001) TCGA-DK-A6AW-01 14 89075721 89075721 G T ZC3H14 Missense_Mutation p.R660I 0.39 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 14 90429835 90429835 G T TDP1 Missense_Mutation p.R126I 0.35 deleterious(0.04) benign(0.009) TCGA-DK-A6AW-01 14 90770410 90770410 C T NRDE2 Missense_Mutation p.E292K 0.45 tolerated(0.12) benign(0.434) TCGA-DK-A6AW-01 14 90782924 90782924 C T NRDE2 Silent p.P135P 0.47 TCGA-DK-A6AW-01 14 92562453 92562453 C A ATXN3 Missense_Mutation p.G73V 0.39 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 14 92608528 92608528 C T CPSF2 Nonsense_Mutation p.R228* 0.51 TCGA-DK-A6AW-01 14 93119327 93119327 C T RIN3 Missense_Mutation p.R645C 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 14 93264299 93264299 G T GOLGA5 Nonsense_Mutation p.E173* 0.36 TCGA-DK-A6AW-01 14 93649975 93649975 G A MOAP1 Nonsense_Mutation p.R205* 0.43 TCGA-DK-A6AW-01 14 94088838 94088838 G A UNC79 Silent p.S1576S 0.53 TCGA-DK-A6AW-01 14 94089061 94089061 G A UNC79 Missense_Mutation p.E1651K 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A6AW-01 14 94107576 94107576 G A UNC79 Silent p.P1824P 0.40 TCGA-DK-A6AW-01 14 94594976 94594976 G A IFI27L2 Missense_Mutation p.A25V 0.46 deleterious(0.04) unknown(0) TCGA-DK-A6AW-01 14 94776247 94776247 G A SERPINA6 Missense_Mutation p.S237L 0.47 tolerated(0.14) benign(0.103) TCGA-DK-A6AW-01 14 95053956 95053956 G T SERPINA5 Missense_Mutation p.S86I 0.44 deleterious(0.05) possibly_damaging(0.487) TCGA-DK-A6AW-01 14 95560464 95560464 C T DICER1 Missense_Mutation p.D1709N 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 14 95592923 95592923 C T DICER1 Silent p.S299S 0.41 TCGA-DK-A6AW-01 14 95598999 95598999 C T DICER1 Missense_Mutation p.A54T 0.41 tolerated(0.25) possibly_damaging(0.621) TCGA-DK-A6AW-01 14 95669335 95669335 G A CLMN Missense_Mutation p.S784L 0.41 tolerated(0.13) benign(0.004) TCGA-DK-A6AW-01 14 97313616 97313616 T C VRK1 Silent p.R103R 0.46 TCGA-DK-A6AW-01 15 100272132 100272132 C T LYSMD4 5'UTR 0.60 TCGA-DK-A6AW-01 15 100332001 100332001 G T AC090825.1 5'Flank 0.27 TCGA-DK-A6AW-01 15 101589879 101589879 G T LRRK1 Missense_Mutation p.K1110N 0.35 deleterious(0.02) possibly_damaging(0.881) TCGA-DK-A6AW-01 15 20649673 20649673 C A HERC2P3 Splice_Site 0.28 TCGA-DK-A6AW-01 15 20663119 20663119 G A HERC2P3 RNA 0.20 TCGA-DK-A6AW-01 15 23114233 23114233 G A RP11-566K19.6 RNA 0.33 TCGA-DK-A6AW-01 15 23890752 23890752 G T MAGEL2 Nonsense_Mutation p.S110* 0.48 TCGA-DK-A6AW-01 15 24922901 24922901 C A NPAP1 Missense_Mutation p.H629Q 0.45 tolerated(0.59) benign(0.327) TCGA-DK-A6AW-01 15 24923560 24923560 G A NPAP1 Missense_Mutation p.R849Q 0.48 tolerated(0.39) benign(0) TCGA-DK-A6AW-01 15 25227202 25227202 G T SNRPN 3'Flank 0.42 TCGA-DK-A6AW-01 15 25324208 25324208 C T SNORD116-13 RNA 0.41 TCGA-DK-A6AW-01 15 25453103 25453103 C T SNORD115-22 5'Flank 0.33 TCGA-DK-A6AW-01 15 25961963 25961963 C T ATP10A Missense_Mutation p.E564K 0.35 deleterious(0.05) benign(0.411) TCGA-DK-A6AW-01 15 26812832 26812832 C T GABRB3 Missense_Mutation p.G244E 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 15 27725813 27725813 G T GABRG3 Nonsense_Mutation p.E198* 0.69 TCGA-DK-A6AW-01 15 28096594 28096594 C T OCA2 Missense_Mutation p.D758N 0.47 tolerated(0.52) possibly_damaging(0.477) TCGA-DK-A6AW-01 15 28375399 28375399 G A HERC2 Nonsense_Mutation p.R4238* 0.49 TCGA-DK-A6AW-01 15 28478351 28478351 G T HERC2 Missense_Mutation p.S1539Y 0.41 possibly_damaging(0.731) TCGA-DK-A6AW-01 15 30663328 30663328 C T CHRFAM7A Missense_Mutation p.A195T 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-DK-A6AW-01 15 31197389 31197389 G T FAN1 Nonsense_Mutation p.E175* 0.41 TCGA-DK-A6AW-01 15 31269112 31269112 T C MTMR10 Silent p.A56A 0.39 TCGA-DK-A6AW-01 15 32916532 32916532 G T ARHGAP11A Missense_Mutation p.K152N 0.42 deleterious(0) possibly_damaging(0.821) TCGA-DK-A6AW-01 15 32928361 32928361 G T ARHGAP11A Intron 0.43 TCGA-DK-A6AW-01 15 33359296 33359296 C A FMN1 Nonsense_Mutation p.E264* 0.35 TCGA-DK-A6AW-01 15 34123273 34123273 C A RYR3 Missense_Mutation p.S3815Y 0.45 probably_damaging(0.981) TCGA-DK-A6AW-01 15 34130757 34130757 C T RYR3 Silent p.F4192F 0.45 TCGA-DK-A6AW-01 15 34137129 34137129 G A RYR3 Missense_Mutation p.E4455K 0.50 benign(0.028) TCGA-DK-A6AW-01 15 34355561 34355561 C T CHRM5 Nonsense_Mutation p.R215* 0.43 TCGA-DK-A6AW-01 15 34649136 34649136 C A NUTM1 Missense_Mutation p.P948H 0.38 deleterious(0.01) probably_damaging(0.935) TCGA-DK-A6AW-01 15 35045102 35045102 T C GJD2 Silent p.L181L 0.44 TCGA-DK-A6AW-01 15 37110049 37110049 C T CSNK1A1P1 RNA 0.28 TCGA-DK-A6AW-01 15 38786627 38786627 C T RASGRP1 Missense_Mutation p.E739K 0.32 deleterious_low_confidence(0.01) benign(0.009) TCGA-DK-A6AW-01 15 38808511 38808511 T G RASGRP1 Missense_Mutation p.K188Q 0.45 tolerated(0.15) benign(0.04) TCGA-DK-A6AW-01 15 38810527 38810527 C T RASGRP1 Missense_Mutation p.E163K 0.58 tolerated(0.07) benign(0.01) TCGA-DK-A6AW-01 15 40902467 40902467 G T CASC5 Missense_Mutation p.M74I 0.44 deleterious(0.02) benign(0.051) TCGA-DK-A6AW-01 15 40913124 40913124 G T CASC5 Missense_Mutation p.R247I 0.42 deleterious(0) probably_damaging(0.916) TCGA-DK-A6AW-01 15 40913171 40913171 G T CASC5 Nonsense_Mutation p.E263* 0.35 TCGA-DK-A6AW-01 15 40915710 40915710 A C CASC5 Missense_Mutation p.K1109T 0.53 tolerated(0.05) benign(0.081) TCGA-DK-A6AW-01 15 40915757 40915757 G A CASC5 Missense_Mutation p.E1125K 0.38 tolerated(1) benign(0.003) TCGA-DK-A6AW-01 15 40917282 40917282 A C CASC5 Missense_Mutation p.N1633T 0.50 deleterious(0) benign(0.408) TCGA-DK-A6AW-01 15 41165559 41165559 C T RHOV Silent p.A136A 0.46 TCGA-DK-A6AW-01 15 41476596 41476596 A C EXD1 Missense_Mutation p.F360V 0.48 deleterious(0.03) benign(0.009) TCGA-DK-A6AW-01 15 41605539 41605539 T C OIP5 Missense_Mutation p.T176A 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 15 41679789 41679789 G T NDUFAF1 Silent p.I279I 0.49 TCGA-DK-A6AW-01 15 41816367 41816367 G A RPAP1 Missense_Mutation p.R721W 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 15 41961767 41961767 T G MGA Silent p.T225T 0.45 TCGA-DK-A6AW-01 15 42041074 42041074 C T MGA Nonsense_Mutation p.R1818* 0.44 TCGA-DK-A6AW-01 15 42182377 42182377 C A SPTBN5 Missense_Mutation p.E137D 0.52 probably_damaging(0.981) TCGA-DK-A6AW-01 15 42281680 42281680 G A PLA2G4E Silent p.F552F 0.46 TCGA-DK-A6AW-01 15 42436661 42436661 G A PLA2G4F Silent p.F654F 0.46 TCGA-DK-A6AW-01 15 42606329 42606329 G T GANC Intron 0.47 TCGA-DK-A6AW-01 15 42839482 42839482 C T LRRC57 Missense_Mutation p.E157K 0.39 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 15 43258414 43258414 G A UBR1 Missense_Mutation p.R1510C 0.46 deleterious(0) possibly_damaging(0.892) TCGA-DK-A6AW-01 15 43476504 43476504 T C TMEM62 Missense_Mutation p.L551S 0.43 tolerated(0.09) probably_damaging(0.935) TCGA-DK-A6AW-01 15 43628007 43628007 G T ADAL Missense_Mutation p.K59N 0.35 tolerated(0.16) benign(0.012) TCGA-DK-A6AW-01 15 43730552 43730552 C T TP53BP1 Missense_Mutation p.R1054Q 0.53 tolerated(0.31) benign(0.005) TCGA-DK-A6AW-01 15 43773211 43773211 T G TP53BP1 Silent p.G127G 0.46 TCGA-DK-A6AW-01 15 43815111 43815111 C T MAP1A Silent p.V480V 0.32 TCGA-DK-A6AW-01 15 43817926 43817926 G T MAP1A Missense_Mutation p.D1419Y 0.31 possibly_damaging(0.532) TCGA-DK-A6AW-01 15 44087639 44087639 G A SERINC4 Silent p.F430F 0.39 TCGA-DK-A6AW-01 15 45051838 45051838 G A TRIM69 Missense_Mutation p.D272N 0.46 deleterious(0.01) possibly_damaging(0.675) TCGA-DK-A6AW-01 15 45668986 45668986 C T GATM Missense_Mutation p.R34Q 0.35 deleterious_low_confidence(0.02) benign(0.116) TCGA-DK-A6AW-01 15 45725268 45725268 T G C15orf48 3'UTR 0.41 TCGA-DK-A6AW-01 15 48062819 48062819 C T SEMA6D Nonsense_Mutation p.R687* 0.53 TCGA-DK-A6AW-01 15 48435151 48435151 T G MYEF2 Missense_Mutation p.K586T 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A6AW-01 15 48719886 48719886 G A FBN1 Missense_Mutation p.S2361L 0.36 possibly_damaging(0.636) TCGA-DK-A6AW-01 15 49081067 49081067 C A CEP152 Missense_Mutation p.K368N 0.45 deleterious(0.05) possibly_damaging(0.742) TCGA-DK-A6AW-01 15 49327568 49327568 C T SECISBP2L Missense_Mutation p.R164Q 0.46 deleterious(0.01) possibly_damaging(0.803) TCGA-DK-A6AW-01 15 49426143 49426143 G T COPS2 Missense_Mutation p.P300Q 0.46 deleterious(0) benign(0.269) TCGA-DK-A6AW-01 15 49431751 49431751 G T COPS2 Missense_Mutation p.L116I 0.43 deleterious(0.01) possibly_damaging(0.749) TCGA-DK-A6AW-01 15 50303051 50303051 T G ATP8B4 Missense_Mutation p.Q142H 0.44 tolerated(0.08) probably_damaging(0.968) TCGA-DK-A6AW-01 15 50399146 50399146 C T ATP8B4 Silent p.K6K 0.29 TCGA-DK-A6AW-01 15 50776508 50776508 C A USP8 Missense_Mutation p.L614I 0.42 tolerated(0.47) benign(0.042) TCGA-DK-A6AW-01 15 50790854 50790854 A T USP8 Missense_Mutation p.N1034Y 0.48 deleterious(0) possibly_damaging(0.794) TCGA-DK-A6AW-01 15 50853894 50853894 G T TRPM7 Missense_Mutation p.S1860Y 0.50 deleterious_low_confidence(0) benign(0.231) TCGA-DK-A6AW-01 15 51692680 51692680 A G GLDN Missense_Mutation p.T338A 0.51 tolerated(1) benign(0.032) TCGA-DK-A6AW-01 15 51741195 51741195 G T DMXL2 Missense_Mutation p.L3034I 0.46 deleterious_low_confidence(0.02) benign(0.087) TCGA-DK-A6AW-01 15 51758397 51758397 C T DMXL2 Missense_Mutation p.D2502N 0.53 tolerated(1) benign(0.028) TCGA-DK-A6AW-01 15 52017279 52017279 C A LYSMD2 Missense_Mutation p.D105Y 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 15 52258527 52258527 T C LEO1 Missense_Mutation p.D78G 0.46 deleterious_low_confidence(0) benign(0.126) TCGA-DK-A6AW-01 15 52402098 52402098 G A BCL2L10 Silent p.L188L 0.48 TCGA-DK-A6AW-01 15 52902154 52902154 G A FAM214A Silent p.G319G 0.41 TCGA-DK-A6AW-01 15 56134328 56134328 G A NEDD4 Missense_Mutation p.R895C 0.43 deleterious(0) probably_damaging(0.922) TCGA-DK-A6AW-01 15 56386157 56386157 G A RFX7 Missense_Mutation p.L1257F 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A6AW-01 15 57809159 57809159 C T CGNL1 Missense_Mutation p.A862V 0.35 tolerated(0.36) benign(0.006) TCGA-DK-A6AW-01 15 57896543 57896543 G T MYZAP Missense_Mutation p.R51I 0.44 deleterious(0) benign(0.343) TCGA-DK-A6AW-01 15 59910973 59910973 T C GCNT3 Missense_Mutation p.I179T 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 15 62210341 62210341 G T VPS13C Nonsense_Mutation p.S2585* 0.40 TCGA-DK-A6AW-01 15 62217669 62217669 C A VPS13C Nonsense_Mutation p.E2199* 0.50 TCGA-DK-A6AW-01 15 62223291 62223291 C T VPS13C Silent p.S2012S 0.47 TCGA-DK-A6AW-01 15 62255000 62255000 C T VPS13C Missense_Mutation p.R1128Q 0.28 deleterious(0.03) probably_damaging(0.982) TCGA-DK-A6AW-01 15 62257012 62257012 C T VPS13C Missense_Mutation p.A1034T 0.35 tolerated(0.08) benign(0.069) TCGA-DK-A6AW-01 15 63125738 63125738 C A TLN2 Silent p.I2346I 0.44 TCGA-DK-A6AW-01 15 63446186 63446186 C A RPS27L 3'UTR 0.55 TCGA-DK-A6AW-01 15 64039239 64039239 T G HERC1 Missense_Mutation p.N800H 0.55 benign(0.355) TCGA-DK-A6AW-01 15 65490442 65490442 T C CILP Missense_Mutation p.T728A 0.43 tolerated(0.11) probably_damaging(0.986) TCGA-DK-A6AW-01 15 66007871 66007871 G T DENND4A Missense_Mutation p.S633Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 15 66828398 66828398 C A ZWILCH Missense_Mutation p.S490Y 0.58 tolerated(1) possibly_damaging(0.493) TCGA-DK-A6AW-01 15 66844082 66844082 C A LCTL Missense_Mutation p.R481I 0.38 deleterious(0.01) possibly_damaging(0.739) TCGA-DK-A6AW-01 15 66853596 66853596 C A LCTL Missense_Mutation p.D180Y 0.44 deleterious(0) probably_damaging(0.988) TCGA-DK-A6AW-01 15 66855937 66855937 C T LCTL Missense_Mutation p.E133K 0.46 tolerated(0.86) benign(0.001) TCGA-DK-A6AW-01 15 67529057 67529057 T G AAGAB Missense_Mutation p.N59H 0.44 tolerated(0.95) benign(0.01) TCGA-DK-A6AW-01 15 67893072 67893072 G T MAP2K5 Missense_Mutation p.G177V 0.40 deleterious(0.01) probably_damaging(0.955) TCGA-DK-A6AW-01 15 68434308 68434308 G A PIAS1 Missense_Mutation p.R165Q 0.30 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 15 68603417 68603417 G A ITGA11 Missense_Mutation p.A1030V 0.47 tolerated(0.33) benign(0.001) TCGA-DK-A6AW-01 15 68641228 68641228 C A ITGA11 Missense_Mutation p.K357N 0.44 tolerated(0.11) possibly_damaging(0.544) TCGA-DK-A6AW-01 15 69079815 69079815 C T ANP32A Silent p.P88P 0.50 TCGA-DK-A6AW-01 15 69320575 69320575 C A NOX5 Missense_Mutation p.F65L 0.52 tolerated(0.06) probably_damaging(0.934) TCGA-DK-A6AW-01 15 70959707 70959707 G T UACA Missense_Mutation p.L1106I 0.52 tolerated(0.18) benign(0.026) TCGA-DK-A6AW-01 15 70960625 70960625 C T UACA Missense_Mutation p.E800K 0.55 tolerated(0.19) probably_damaging(0.995) TCGA-DK-A6AW-01 15 70961004 70961004 A C UACA Missense_Mutation p.N673K 0.38 tolerated(0.12) benign(0.15) TCGA-DK-A6AW-01 15 71953067 71953067 T G THSD4 Missense_Mutation p.Y451D 0.48 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 15 72691082 72691082 G A TMEM202 Missense_Mutation p.R57Q 0.43 deleterious(0.03) benign(0.372) TCGA-DK-A6AW-01 15 73635811 73635811 C T HCN4 Missense_Mutation p.R375H 0.41 deleterious(0) benign(0.133) TCGA-DK-A6AW-01 15 74326611 74326611 G T PML Intron 0.50 TCGA-DK-A6AW-01 15 74704300 74704300 C T SEMA7A Missense_Mutation p.A450T 0.45 tolerated(0.22) benign(0.152) TCGA-DK-A6AW-01 15 75091689 75091689 C T CSK Missense_Mutation p.R107W 0.39 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 15 75094078 75094078 C T CSK Silent p.F310F 0.34 TCGA-DK-A6AW-01 15 75499258 75499258 G A C15orf39 Missense_Mutation p.R290H 0.39 tolerated(0.28) possibly_damaging(0.715) TCGA-DK-A6AW-01 15 75594066 75594066 A C DNM1P34 RNA 0.40 TCGA-DK-A6AW-01 15 75977907 75977907 A C CSPG4 Missense_Mutation p.S1309A 0.47 deleterious(0.01) benign(0.097) TCGA-DK-A6AW-01 15 76019513 76019513 G A ODF3L1 Missense_Mutation p.D153N 0.44 deleterious(0.01) probably_damaging(0.953) TCGA-DK-A6AW-01 15 76303595 76303595 C A NRG4 5'UTR 0.43 TCGA-DK-A6AW-01 15 76995295 76995295 C A SCAPER Nonsense_Mutation p.E766* 0.48 TCGA-DK-A6AW-01 15 77087652 77087652 T C SCAPER Silent p.P247P 0.42 TCGA-DK-A6AW-01 15 78765723 78765723 G A IREB2 Silent p.K341K 0.28 TCGA-DK-A6AW-01 15 78782781 78782781 G A IREB2 Nonsense_Mutation p.W698* 0.47 TCGA-DK-A6AW-01 15 78885434 78885434 G A CHRNA5 Missense_Mutation p.V416I 0.48 tolerated(0.17) benign(0.116) TCGA-DK-A6AW-01 15 78894228 78894228 G A CHRNA3 Silent p.C252C 0.38 TCGA-DK-A6AW-01 15 81199146 81199146 C A KIAA1199 Missense_Mutation p.F518L 0.41 deleterious(0.04) possibly_damaging(0.556) TCGA-DK-A6AW-01 15 81212443 81212443 C A KIAA1199 Missense_Mutation p.D602E 0.30 deleterious(0) possibly_damaging(0.634) TCGA-DK-A6AW-01 15 81230243 81230243 C T KIAA1199 Silent p.F1110F 0.38 TCGA-DK-A6AW-01 15 81271767 81271767 G A MESDC2 Silent p.Y166Y 0.49 TCGA-DK-A6AW-01 15 81558023 81558023 G A IL16 Missense_Mutation p.E149K 0.44 deleterious(0.01) benign(0.125) TCGA-DK-A6AW-01 15 81558024 81558024 A T IL16 Missense_Mutation p.E149V 0.40 deleterious(0) benign(0.312) TCGA-DK-A6AW-01 15 81592810 81592810 C T IL16 Missense_Mutation p.S1048L 0.55 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 15 81633857 81633857 A G TMC3 Missense_Mutation p.M573T 0.56 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 15 83215217 83215217 G A CPEB1 Missense_Mutation p.P517S 0.45 tolerated(0.16) possibly_damaging(0.562) TCGA-DK-A6AW-01 15 83222281 83222281 A C CPEB1 Silent p.V333V 0.51 TCGA-DK-A6AW-01 15 83331576 83331576 G T AP3B2 Missense_Mutation p.F882L 0.50 tolerated(0.63) benign(0.153) TCGA-DK-A6AW-01 15 83335620 83335620 G A AP3B2 Silent p.D577D 0.56 TCGA-DK-A6AW-01 15 83346520 83346520 T G AP3B2 Silent p.A427A 0.43 TCGA-DK-A6AW-01 15 83430921 83430921 G A FSD2 Missense_Mutation p.R644C 0.42 deleterious(0) possibly_damaging(0.505) TCGA-DK-A6AW-01 15 83456082 83456082 A C FSD2 Missense_Mutation p.F21V 0.36 deleterious(0) benign(0.424) TCGA-DK-A6AW-01 15 84237317 84237317 C T SH3GL3 Missense_Mutation p.S75L 0.41 deleterious(0.03) possibly_damaging(0.853) TCGA-DK-A6AW-01 15 85634393 85634393 C A PDE8A Nonsense_Mutation p.S278* 0.57 TCGA-DK-A6AW-01 15 86124463 86124463 A G AKAP13 Missense_Mutation p.D1055G 0.14 deleterious_low_confidence(0.04) benign(0) TCGA-DK-A6AW-01 15 86807870 86807870 G A AGBL1 Missense_Mutation p.E444K 0.44 deleterious(0.02) benign(0.169) TCGA-DK-A6AW-01 15 89074905 89074905 C T DET1 Missense_Mutation p.R22Q 0.44 tolerated(0.06) possibly_damaging(0.58) TCGA-DK-A6AW-01 15 89442725 89442725 C A MFGE8 Missense_Mutation p.K355N 0.43 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 15 89450443 89450443 C T MFGE8 Missense_Mutation p.D124N 0.53 tolerated(0.2) benign(0.057) TCGA-DK-A6AW-01 15 89872334 89872334 C T POLG Missense_Mutation p.R288H 0.55 tolerated(0.12) benign(0.006) TCGA-DK-A6AW-01 15 90226805 90226805 G T PEX11A Missense_Mutation p.L183I 0.50 deleterious(0.02) benign(0.247) TCGA-DK-A6AW-01 15 90245177 90245177 T G WDR93 Missense_Mutation p.L67R 0.30 deleterious(0) probably_damaging(0.98) TCGA-DK-A6AW-01 15 90248798 90248798 C A WDR93 Silent p.L170L 0.35 TCGA-DK-A6AW-01 15 90764955 90764955 C A SEMA4B Missense_Mutation p.F273L 0.52 deleterious(0.02) possibly_damaging(0.834) TCGA-DK-A6AW-01 15 90799029 90799029 G T TTLL13 Missense_Mutation p.D154Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 15 90904195 90904195 G A ZNF774 Missense_Mutation p.E378K 0.42 tolerated(0.92) benign(0.001) TCGA-DK-A6AW-01 15 91432589 91432589 T C FES Missense_Mutation p.V241A 0.57 deleterious(0) benign(0.119) TCGA-DK-A6AW-01 15 91463045 91463045 C A MAN2A2 3'UTR 0.24 TCGA-DK-A6AW-01 15 91512699 91512699 G A PRC1 Missense_Mutation p.A576V 0.48 deleterious(0) possibly_damaging(0.732) TCGA-DK-A6AW-01 15 91573113 91573113 C A AC068831.10 Intron 0.42 TCGA-DK-A6AW-01 15 93007600 93007600 C T ST8SIA2 Silent p.C371C 0.43 TCGA-DK-A6AW-01 15 94882608 94882608 G A MCTP2 Missense_Mutation p.D243N 0.47 tolerated(0.68) benign(0.23) TCGA-DK-A6AW-01 15 99666957 99666957 G T SYNM Missense_Mutation p.E321D 0.31 tolerated(0.3) possibly_damaging(0.753) TCGA-DK-A6AW-01 15 99672876 99672876 G T SYNM Missense_Mutation p.E1436D 0.42 tolerated(0.08) possibly_damaging(0.572) TCGA-DK-A6AW-01 15 99696254 99696254 C A TTC23 Intron 0.54 TCGA-DK-A6AW-01 15 99828120 99828120 C T LRRC28 Nonsense_Mutation p.R117* 0.45 TCGA-DK-A6AW-01 16 10576038 10576038 A G ATF7IP2 Missense_Mutation p.I661V 0.47 tolerated(0.12) possibly_damaging(0.639) TCGA-DK-A6AW-01 16 11773214 11773214 A C TXNDC11 Missense_Mutation p.L905R 0.49 tolerated(0.07) probably_damaging(0.974) TCGA-DK-A6AW-01 16 14294343 14294343 C T MKL2 Intron 0.41 TCGA-DK-A6AW-01 16 14354956 14354956 C A MKL2 Missense_Mutation p.F935L 0.50 tolerated(0.23) benign(0.044) TCGA-DK-A6AW-01 16 15771787 15771787 G A NDE1 Missense_Mutation p.D123N 0.46 deleterious(0) probably_damaging(0.966) TCGA-DK-A6AW-01 16 15847333 15847333 C A MYH11 Missense_Mutation p.K601N 0.47 probably_damaging(0.95) TCGA-DK-A6AW-01 16 17228461 17228461 C T XYLT1 Silent p.E632E 0.44 TCGA-DK-A6AW-01 16 1798633 1798633 C T MAPK8IP3 Silent p.F375F 0.51 TCGA-DK-A6AW-01 16 18881228 18881228 C A SMG1 Missense_Mutation p.D861Y 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A6AW-01 16 19471642 19471642 G T TMC5 Missense_Mutation p.E378D 0.61 deleterious(0) possibly_damaging(0.742) TCGA-DK-A6AW-01 16 19490812 19490812 C A TMC5 Missense_Mutation p.F743L 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A6AW-01 16 1994846 1994846 C A RPL3L Missense_Mutation p.D406Y 0.23 deleterious_low_confidence(0) benign(0.172) TCGA-DK-A6AW-01 16 20370613 20370613 A C PDILT 3'UTR 0.56 TCGA-DK-A6AW-01 16 20422999 20422999 C T ACSM5 Missense_Mutation p.R65W 0.32 deleterious(0) benign(0.339) TCGA-DK-A6AW-01 16 20476851 20476851 C T ACSM2A Missense_Mutation p.L64F 0.51 deleterious(0) benign(0.002) TCGA-DK-A6AW-01 16 20548635 20548635 C T ACSM2B Missense_Mutation p.R560Q 0.43 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 16 20636753 20636753 G A ACSM1 Nonsense_Mutation p.R507* 0.41 TCGA-DK-A6AW-01 16 20966178 20966178 G T DNAH3 Missense_Mutation p.F3676L 0.50 deleterious(0.01) possibly_damaging(0.859) TCGA-DK-A6AW-01 16 20975264 20975264 G A DNAH3 Silent p.I3314I 0.46 TCGA-DK-A6AW-01 16 20996881 20996881 C A DNAH3 Nonsense_Mutation p.E2395* 0.50 TCGA-DK-A6AW-01 16 20999312 20999312 G A DNAH3 Missense_Mutation p.S2226L 0.93 deleterious(0.04) possibly_damaging(0.612) TCGA-DK-A6AW-01 16 21261635 21261635 C T ANKS4B Missense_Mutation p.L250F 0.50 tolerated(0.72) benign(0.373) TCGA-DK-A6AW-01 16 21328291 21328291 G A CRYM-AS1 RNA 0.40 TCGA-DK-A6AW-01 16 22132383 22132383 A G VWA3A Missense_Mutation p.D404G 0.42 tolerated(0.19) benign(0.045) TCGA-DK-A6AW-01 16 22155616 22155616 T C VWA3A Missense_Mutation p.C881R 0.45 tolerated(0.13) benign(0.002) TCGA-DK-A6AW-01 16 2234831 2234831 G T CASKIN1 Missense_Mutation p.Q455K 0.37 benign(0.011) TCGA-DK-A6AW-01 16 2237446 2237446 C T CASKIN1 Missense_Mutation p.G212S 0.46 possibly_damaging(0.89) TCGA-DK-A6AW-01 16 22588020 22588020 G A RP11-368J21.3 RNA 0.27 TCGA-DK-A6AW-01 16 23700654 23700654 C T PLK1 Missense_Mutation p.R456C 0.41 deleterious(0) probably_damaging(0.934) TCGA-DK-A6AW-01 16 2373391 2373391 G T ABCA3 Intron 0.46 TCGA-DK-A6AW-01 16 23768528 23768528 C T CHP2 Missense_Mutation p.R141C 0.51 deleterious(0.02) probably_damaging(1) TCGA-DK-A6AW-01 16 24105526 24105526 G T PRKCB Missense_Mutation p.E243D 0.48 tolerated(0.06) possibly_damaging(0.885) TCGA-DK-A6AW-01 16 24135200 24135200 G A PRKCB Silent p.T321T 0.43 TCGA-DK-A6AW-01 16 24567226 24567226 C T RBBP6 Silent p.C174C 0.57 TCGA-DK-A6AW-01 16 24582988 24582988 C A RBBP6 Missense_Mutation p.S1534Y 0.51 tolerated_low_confidence(0.29) unknown(0) TCGA-DK-A6AW-01 16 24902304 24902304 T G SLC5A11 Missense_Mutation p.I260S 0.07 deleterious(0) possibly_damaging(0.891) TCGA-DK-A6AW-01 16 25258442 25258442 G A ZKSCAN2 Missense_Mutation p.R359C 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 16 25258602 25258602 G A ZKSCAN2 Silent p.Y305Y 0.41 TCGA-DK-A6AW-01 16 25268558 25268558 A C ZKSCAN2 5'UTR 0.73 TCGA-DK-A6AW-01 16 27751496 27751496 C T KIAA0556 Silent p.S626S 0.31 TCGA-DK-A6AW-01 16 27856304 27856304 C A GSG1L Missense_Mutation p.R210I 0.57 deleterious(0) probably_damaging(0.931) TCGA-DK-A6AW-01 16 27974485 27974485 G A GSG1L Missense_Mutation p.S130L 0.38 deleterious(0.01) possibly_damaging(0.758) TCGA-DK-A6AW-01 16 28124274 28124274 T C XPO6 Missense_Mutation p.K701R 0.35 tolerated(0.09) benign(0.111) TCGA-DK-A6AW-01 16 2812687 2812687 A C SRRM2 Silent p.R720R 0.50 TCGA-DK-A6AW-01 16 2814965 2814965 A C SRRM2 Missense_Mutation p.E1479A 0.48 unknown(0) TCGA-DK-A6AW-01 16 2815685 2815685 G T SRRM2 Missense_Mutation p.R1719I 0.50 unknown(0) TCGA-DK-A6AW-01 16 2816819 2816819 G T SRRM2 Missense_Mutation p.R2097I 0.36 probably_damaging(0.996) TCGA-DK-A6AW-01 16 28354429 28354430 - T NPIPB6 Frame_Shift_Ins p.N259Kfs*18 0.33 TCGA-DK-A6AW-01 16 28493454 28493454 C T CLN3 Missense_Mutation p.R343H 0.48 deleterious(0.05) benign(0.103) TCGA-DK-A6AW-01 16 28844533 28844533 G A ATXN2L Missense_Mutation p.D605N 0.51 tolerated(0.25) benign(0.082) TCGA-DK-A6AW-01 16 28845698 28845698 C A ATXN2L Nonsense_Mutation p.S736* 0.42 TCGA-DK-A6AW-01 16 28884884 28884884 G A SH2B1 Missense_Mutation p.A672T 0.55 tolerated_low_confidence(0.6) possibly_damaging(0.499) TCGA-DK-A6AW-01 16 29818106 29818106 G T MAZ Missense_Mutation p.M28I 0.49 tolerated_low_confidence(0.35) unknown(0) TCGA-DK-A6AW-01 16 29883605 29883605 C T SEZ6L2 Splice_Site p.X869_splice 0.53 TCGA-DK-A6AW-01 16 30037953 30037953 G A FAM57B Silent p.L141L 0.50 TCGA-DK-A6AW-01 16 30134484 30134484 C A MAPK3 Missense_Mutation p.R16I 0.50 tolerated(0.19) benign(0.022) TCGA-DK-A6AW-01 16 30206085 30206085 C T SLX1A Silent p.G71G 0.08 TCGA-DK-A6AW-01 16 30506069 30506069 C T ITGAL Silent p.V467V 0.44 TCGA-DK-A6AW-01 16 30536535 30536535 C T ZNF768 Missense_Mutation p.R309H 0.38 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-DK-A6AW-01 16 31159788 31159788 G A PRSS36 Missense_Mutation p.P161S 0.50 deleterious(0) probably_damaging(0.976) TCGA-DK-A6AW-01 16 31230452 31230452 G A TRIM72 Missense_Mutation p.A143T 0.58 tolerated(0.08) benign(0.168) TCGA-DK-A6AW-01 16 31373186 31373186 G A ITGAX Missense_Mutation p.E348K 0.40 deleterious(0.01) probably_damaging(0.95) TCGA-DK-A6AW-01 16 31497162 31497162 G A SLC5A2 Missense_Mutation p.R139H 0.45 deleterious(0.02) probably_damaging(0.91) TCGA-DK-A6AW-01 16 31927273 31927273 G A ZNF267 Missense_Mutation p.R568Q 0.93 tolerated(0.12) probably_damaging(0.97) TCGA-DK-A6AW-01 16 3789685 3789685 G A CREBBP Nonsense_Mutation p.R1392* 0.44 TCGA-DK-A6AW-01 16 3824685 3824685 G T CREBBP Nonsense_Mutation p.S723* 0.48 TCGA-DK-A6AW-01 16 4039087 4039087 C A ADCY9 Missense_Mutation p.D740Y 0.54 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 16 426201 426201 G A TMEM8A Missense_Mutation p.R387W 0.57 tolerated(0.18) benign(0.006) TCGA-DK-A6AW-01 16 46615835 46615835 C T SHCBP1 Missense_Mutation p.E609K 0.35 tolerated(0.08) benign(0.017) TCGA-DK-A6AW-01 16 46729582 46729582 C T ORC6 Silent p.V186V 0.56 TCGA-DK-A6AW-01 16 46836895 46836895 C A C16orf87 Missense_Mutation p.R145I 0.46 deleterious(0) possibly_damaging(0.766) TCGA-DK-A6AW-01 16 46843695 46843695 T G C16orf87 Missense_Mutation p.N56H 0.54 tolerated(0.07) benign(0.032) TCGA-DK-A6AW-01 16 46962903 46962903 C T GPT2 Silent p.Y522Y 0.32 TCGA-DK-A6AW-01 16 47005478 47005478 C A DNAJA2 Nonsense_Mutation p.E49* 0.43 TCGA-DK-A6AW-01 16 47007476 47007476 T C DNAJA2 Missense_Mutation p.N3S 0.37 tolerated_low_confidence(0.15) benign(0.005) TCGA-DK-A6AW-01 16 48174765 48174765 C T ABCC12 Missense_Mutation p.G164R 0.45 deleterious(0.02) possibly_damaging(0.806) TCGA-DK-A6AW-01 16 48212569 48212569 C T ABCC11 Missense_Mutation p.R1096Q 0.43 deleterious(0.01) possibly_damaging(0.889) TCGA-DK-A6AW-01 16 48250115 48250115 C T ABCC11 Silent p.S287S 0.38 TCGA-DK-A6AW-01 16 5040779 5040779 G T SEC14L5 Missense_Mutation p.E119D 0.39 tolerated(0.36) probably_damaging(0.95) TCGA-DK-A6AW-01 16 50811754 50811754 G A CYLD Missense_Mutation p.G347E 0.45 deleterious(0) possibly_damaging(0.889) TCGA-DK-A6AW-01 16 51173805 51173805 C A SALL1 Silent p.T776T 0.42 TCGA-DK-A6AW-01 16 53190255 53190255 C A CHD9 Missense_Mutation p.S85Y 0.43 possibly_damaging(0.904) TCGA-DK-A6AW-01 16 53256587 53256587 A C CHD9 Missense_Mutation p.K606Q 0.38 probably_damaging(0.987) TCGA-DK-A6AW-01 16 53265678 53265678 G A CHD9 Silent p.R831R 0.37 TCGA-DK-A6AW-01 16 53289639 53289639 G A CHD9 Missense_Mutation p.R1386H 0.39 probably_damaging(1) TCGA-DK-A6AW-01 16 53403416 53403416 C A RP11-44F14.1 RNA 0.38 TCGA-DK-A6AW-01 16 53528092 53528092 C T AKTIP Missense_Mutation p.R223H 0.41 tolerated(1) benign(0) TCGA-DK-A6AW-01 16 53653105 53653105 G A RPGRIP1L Missense_Mutation p.R1150W 0.51 deleterious(0) probably_damaging(0.979) TCGA-DK-A6AW-01 16 54145865 54145865 C T FTO 3'UTR 0.44 TCGA-DK-A6AW-01 16 55562424 55562424 C A LPCAT2 Missense_Mutation p.F149L 0.44 deleterious(0) possibly_damaging(0.733) TCGA-DK-A6AW-01 16 56396642 56396642 G T AMFR 3'UTR 0.44 TCGA-DK-A6AW-01 16 56624870 56624870 C T MT3 3'UTR 0.57 TCGA-DK-A6AW-01 16 56672672 56672672 G A MT1A Missense_Mutation p.A8T 0.40 tolerated(0.45) unknown(0) TCGA-DK-A6AW-01 16 56868679 56868679 G A NUP93 Missense_Mutation p.G591R 0.35 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 16 57009054 57009054 C A CETP Silent p.I324I 0.43 TCGA-DK-A6AW-01 16 57159811 57159811 G A CPNE2 Missense_Mutation p.D323N 0.30 tolerated(0.66) benign(0.004) TCGA-DK-A6AW-01 16 57397488 57397488 G T CCL22 Missense_Mutation p.K90N 0.13 tolerated(0.16) benign(0.148) TCGA-DK-A6AW-01 16 57505026 57505026 A C POLR2C Missense_Mutation p.N275H 0.52 tolerated_low_confidence(0.08) benign(0.086) TCGA-DK-A6AW-01 16 57685349 57685349 T G GPR56 Nonsense_Mutation p.L101* 0.50 TCGA-DK-A6AW-01 16 57695840 57695840 C T GPR56 Silent p.V638V 0.50 TCGA-DK-A6AW-01 16 58286717 58286717 G A CCDC113 Missense_Mutation p.R63Q 0.35 tolerated(0.36) benign(0.006) TCGA-DK-A6AW-01 16 58426587 58426587 T C GINS3 Missense_Mutation p.S28P 0.40 deleterious(0.01) probably_damaging(0.922) TCGA-DK-A6AW-01 16 58576360 58576360 C T CNOT1 Missense_Mutation p.G1516D 0.42 tolerated(0.21) possibly_damaging(0.522) TCGA-DK-A6AW-01 16 58585038 58585038 T G CNOT1 Missense_Mutation p.K1114Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 16 58585502 58585502 T G CNOT1 Missense_Mutation p.K1064N 0.46 tolerated(0.29) benign(0.07) TCGA-DK-A6AW-01 16 58712690 58712690 T C SLC38A7 Missense_Mutation p.T127A 0.41 tolerated(0.48) benign(0.026) TCGA-DK-A6AW-01 16 61687711 61687711 T C CDH8 Missense_Mutation p.N734S 0.43 tolerated(0.93) benign(0.007) TCGA-DK-A6AW-01 16 65006915 65006915 C T CDH11 Missense_Mutation p.D428N 0.48 deleterious(0.04) benign(0.321) TCGA-DK-A6AW-01 16 66420777 66420777 C A CDH5 Silent p.V92V 0.35 TCGA-DK-A6AW-01 16 66420925 66420925 C A CDH5 Missense_Mutation p.H142N 0.33 tolerated(0.11) benign(0.027) TCGA-DK-A6AW-01 16 66426249 66426249 C A CDH5 Missense_Mutation p.L394M 0.52 tolerated(0.25) benign(0.099) TCGA-DK-A6AW-01 16 66948239 66948239 G A CDH16 Silent p.A220A 0.34 TCGA-DK-A6AW-01 16 66975531 66975531 C T CES2 Silent p.F410F 0.44 TCGA-DK-A6AW-01 16 66998604 66998604 G A CES3 Missense_Mutation p.D265N 0.44 tolerated(0.13) benign(0.007) TCGA-DK-A6AW-01 16 67183142 67183142 C A B3GNT9 3'UTR 0.23 TCGA-DK-A6AW-01 16 67304668 67304668 G A SLC9A5 Missense_Mutation p.R749Q 0.48 tolerated(0.62) benign(0.097) TCGA-DK-A6AW-01 16 67670646 67670646 G T CTCF Nonsense_Mutation p.E631* 0.40 TCGA-DK-A6AW-01 16 68156560 68156560 G A NFATC3 Silent p.R258R 0.45 TCGA-DK-A6AW-01 16 68200795 68200795 C T NFATC3 Nonsense_Mutation p.R551* 0.08 TCGA-DK-A6AW-01 16 68598026 68598026 G A ZFP90 Missense_Mutation p.E446K 0.43 tolerated(0.13) benign(0.054) TCGA-DK-A6AW-01 16 68598306 68598306 C T ZFP90 Missense_Mutation p.S539L 0.43 tolerated(0.63) possibly_damaging(0.64) TCGA-DK-A6AW-01 16 68857307 68857307 G T CDH1 Nonsense_Mutation p.E648* 0.44 TCGA-DK-A6AW-01 16 70012157 70012157 G A RP11-419C5.2 RNA 0.43 TCGA-DK-A6AW-01 16 70190900 70190900 A G PDPR 3'UTR 0.42 TCGA-DK-A6AW-01 16 70289644 70289644 G A AARS Missense_Mutation p.A758V 0.56 tolerated(0.17) benign(0.001) TCGA-DK-A6AW-01 16 70417131 70417131 C T ST3GAL2 Missense_Mutation p.A241T 0.55 probably_damaging(1) TCGA-DK-A6AW-01 16 70432106 70432106 T C ST3GAL2 Missense_Mutation p.R110G 0.49 possibly_damaging(0.516) TCGA-DK-A6AW-01 16 70589054 70589054 G A SF3B3 Missense_Mutation p.R552Q 0.37 tolerated(0.12) possibly_damaging(0.473) TCGA-DK-A6AW-01 16 70900112 70900112 G A HYDIN Missense_Mutation p.R3811C 0.40 benign(0) TCGA-DK-A6AW-01 16 71318495 71318495 A C CMTR2 Silent p.T443T 0.56 TCGA-DK-A6AW-01 16 71319746 71319746 A T CMTR2 Silent p.I26I 0.53 TCGA-DK-A6AW-01 16 71482693 71482693 C A ZNF23 Missense_Mutation p.R412I 0.62 deleterious(0) probably_damaging(0.957) TCGA-DK-A6AW-01 16 71509992 71509992 C A ZNF19 Missense_Mutation p.R153I 0.66 deleterious(0.05) possibly_damaging(0.694) TCGA-DK-A6AW-01 16 71668172 71668172 G A MARVELD3 Intron 0.41 TCGA-DK-A6AW-01 16 72110731 72110731 G A HPR Silent p.P266P 0.47 TCGA-DK-A6AW-01 16 72993469 72993469 C T ZFHX3 Silent p.P192P 0.53 TCGA-DK-A6AW-01 16 74503953 74503953 G A GLG1 Missense_Mutation p.R750W 0.42 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 16 74716683 74716683 C A MLKL Silent p.V274V 0.52 TCGA-DK-A6AW-01 16 75186809 75186809 C A ZFP1 Intron 0.40 TCGA-DK-A6AW-01 16 75562971 75562971 A C CHST5 3'UTR 0.70 TCGA-DK-A6AW-01 16 76572217 76572217 C A CNTNAP4 Missense_Mutation p.S994Y 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 16 77317752 77317752 G T ADAMTS18 3'UTR 0.19 TCGA-DK-A6AW-01 16 77396084 77396084 C A ADAMTS18 Missense_Mutation p.K378N 0.51 deleterious(0.02) probably_damaging(0.969) TCGA-DK-A6AW-01 16 775282 775282 C A CCDC78 Missense_Mutation p.K149N 0.53 tolerated(0.06) probably_damaging(0.917) TCGA-DK-A6AW-01 16 79632601 79632601 G T MAF Intron 0.59 TCGA-DK-A6AW-01 16 81053750 81053750 C T CENPN Nonsense_Mutation p.R134* 0.53 TCGA-DK-A6AW-01 16 81056428 81056428 G A CENPN Intron 0.33 TCGA-DK-A6AW-01 16 81399016 81399016 C T GAN Missense_Mutation p.R479C 0.44 tolerated(0.18) benign(0.353) TCGA-DK-A6AW-01 16 84014687 84014687 G A NECAB2 Silent p.E138E 0.41 TCGA-DK-A6AW-01 16 841308 841308 G A CHTF18 Missense_Mutation p.E348K 0.33 tolerated(0.77) benign(0.298) TCGA-DK-A6AW-01 16 84940291 84940291 C T CRISPLD2 3'UTR 0.49 TCGA-DK-A6AW-01 16 84940309 84940309 T G CRISPLD2 3'UTR 0.51 TCGA-DK-A6AW-01 16 85667547 85667547 C T GSE1 Missense_Mutation p.S12L 0.45 deleterious(0) unknown(0) TCGA-DK-A6AW-01 16 87678381 87678381 C T JPH3 Silent p.F300F 0.46 TCGA-DK-A6AW-01 16 89256662 89256662 T C CDH15 Silent p.Y330Y 0.42 TCGA-DK-A6AW-01 16 89735916 89735916 T C SPATA33 3'UTR 0.56 TCGA-DK-A6AW-01 16 8996318 8996318 G A USP7 Nonsense_Mutation p.R621* 0.45 TCGA-DK-A6AW-01 17 10222207 10222207 T C MYH13 Missense_Mutation p.N1213S 0.47 tolerated(0.08) probably_damaging(0.992) TCGA-DK-A6AW-01 17 10248814 10248814 G T MYH13 Silent p.V461V 0.40 TCGA-DK-A6AW-01 17 10296523 10296523 G T MYH8 Missense_Mutation p.T1724N 0.45 deleterious(0.01) benign(0.061) TCGA-DK-A6AW-01 17 10355741 10355741 C T MYH4 Missense_Mutation p.E1114K 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 17 10362720 10362720 G A MYH4 Silent p.L479L 0.48 TCGA-DK-A6AW-01 17 10363275 10363275 G T MYH4 Silent p.I470I 0.45 TCGA-DK-A6AW-01 17 10370008 10370008 T C MYH4 Missense_Mutation p.K19E 0.36 deleterious(0.01) benign(0.313) TCGA-DK-A6AW-01 17 10418205 10418205 C A MYH1 Missense_Mutation p.E171D 0.48 deleterious(0.05) benign(0.003) TCGA-DK-A6AW-01 17 10426678 10426678 C A MYH2 Missense_Mutation p.A1842S 0.36 tolerated(0.49) benign(0.01) TCGA-DK-A6AW-01 17 10428602 10428602 T C MYH2 Missense_Mutation p.K1534R 0.60 tolerated(0.13) probably_damaging(1) TCGA-DK-A6AW-01 17 10447417 10447417 G A MYH2 Missense_Mutation p.T178I 0.50 deleterious(0) probably_damaging(0.968) TCGA-DK-A6AW-01 17 10448802 10448802 G T MYH2 Missense_Mutation p.F122L 0.44 deleterious(0.02) benign(0.291) TCGA-DK-A6AW-01 17 10532977 10532977 C T MYH3 Silent p.A1911A 0.40 TCGA-DK-A6AW-01 17 10536067 10536067 C T MYH3 Missense_Mutation p.R1561Q 0.46 deleterious(0.01) benign(0.038) TCGA-DK-A6AW-01 17 10547728 10547728 C T MYH3 Silent p.T450T 0.38 TCGA-DK-A6AW-01 17 11572925 11572925 C T DNAH9 Missense_Mutation p.S1056F 0.46 benign(0.042) TCGA-DK-A6AW-01 17 11671917 11671917 G A DNAH9 Missense_Mutation p.E2440K 0.42 benign(0.211) TCGA-DK-A6AW-01 17 11725280 11725280 C T DNAH9 Silent p.I2917I 0.43 TCGA-DK-A6AW-01 17 12666442 12666442 G T MYOCD Missense_Mutation p.K814N 0.36 tolerated(0.1) probably_damaging(0.99) TCGA-DK-A6AW-01 17 12888105 12888105 C T ARHGAP44 Nonsense_Mutation p.R733* 0.24 TCGA-DK-A6AW-01 17 12913976 12913976 C T ELAC2 Missense_Mutation p.R231K 0.63 tolerated(0.95) benign(0.002) TCGA-DK-A6AW-01 17 14249036 14249036 G T HS3ST3B1 3'UTR 0.46 TCGA-DK-A6AW-01 17 15234553 15234553 G A TEKT3 Missense_Mutation p.S117L 0.43 deleterious(0) benign(0.15) TCGA-DK-A6AW-01 17 15516099 15516099 A C RP11-385D13.1 Missense_Mutation p.N656K 0.45 tolerated_low_confidence(0.77) benign(0.133) TCGA-DK-A6AW-01 17 1579823 1579823 C T PRPF8 Silent p.Q788Q 0.45 TCGA-DK-A6AW-01 17 15930705 15930705 A C TTC19 Missense_Mutation p.K338Q 0.57 tolerated(0.12) possibly_damaging(0.809) TCGA-DK-A6AW-01 17 15938223 15938223 T G NCOR1 Missense_Mutation p.N2331H 0.35 benign(0.309) TCGA-DK-A6AW-01 17 16062080 16062080 C T NCOR1 Silent p.E242E 0.29 TCGA-DK-A6AW-01 17 16527313 16527313 C A ZNF624 Missense_Mutation p.R296I 0.49 deleterious(0.02) benign(0.002) TCGA-DK-A6AW-01 17 16701613 16701614 - T CCDC144A 3'UTR 0.24 TCGA-DK-A6AW-01 17 16722436 16722436 C T AC022596.6 RNA 0.28 TCGA-DK-A6AW-01 17 1679937 1679937 G T SERPINF1 Missense_Mutation p.D300Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 17080620 17080620 G A MPRIP Silent p.A951A 0.44 TCGA-DK-A6AW-01 17 17701109 17701109 C T RAI1 Missense_Mutation p.S1616F 0.36 tolerated(0.28) benign(0.01) TCGA-DK-A6AW-01 17 18052553 18052553 C T MYO15A Missense_Mutation p.S2327L 0.30 unknown(0) TCGA-DK-A6AW-01 17 18250849 18250849 G T SHMT1 Silent p.I160I 0.45 TCGA-DK-A6AW-01 17 18332347 18332347 G T KRT17P2 RNA 0.30 TCGA-DK-A6AW-01 17 18565806 18565806 C T ZNF286B Missense_Mutation p.R338Q 0.46 tolerated(0.87) benign(0.062) TCGA-DK-A6AW-01 17 18692703 18692703 A C TVP23B Missense_Mutation p.D17A 0.44 tolerated(0.14) benign(0.027) TCGA-DK-A6AW-01 17 19315921 19315921 C T RNF112 Missense_Mutation p.S69L 0.35 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 17 20013766 20013766 G A SPECC1 Silent p.T58T 0.45 TCGA-DK-A6AW-01 17 20108493 20108493 A G SPECC1 Missense_Mutation p.I377M 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 20109097 20109097 G A SPECC1 Missense_Mutation p.E579K 0.44 deleterious(0.01) benign(0.033) TCGA-DK-A6AW-01 17 21101654 21101654 C T TMEM11 Missense_Mutation p.E188K 0.40 tolerated(0.09) benign(0.044) TCGA-DK-A6AW-01 17 21320009 21320009 G A KCNJ12 3'UTR 0.24 TCGA-DK-A6AW-01 17 25633893 25633893 C T WSB1 Silent p.V232V 0.50 TCGA-DK-A6AW-01 17 25636296 25636296 T A WSB1 Missense_Mutation p.F294L 0.47 tolerated(1) benign(0.006) TCGA-DK-A6AW-01 17 25958214 25958214 C A LGALS9 5'UTR 0.34 TCGA-DK-A6AW-01 17 26732224 26732224 C T SLC46A1 Missense_Mutation p.S164N 0.38 tolerated(0.07) possibly_damaging(0.489) TCGA-DK-A6AW-01 17 27613909 27613909 T G NUFIP2 Missense_Mutation p.K368T 0.47 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 17 27963104 27963104 C T SSH2 Missense_Mutation p.R688Q 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-DK-A6AW-01 17 28656532 28656532 A G TMIGD1 Missense_Mutation p.V33A 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 28749993 28749993 G T CPD Nonsense_Mutation p.E537* 0.45 TCGA-DK-A6AW-01 17 28886605 28886605 C A TBC1D29 5'UTR 0.46 TCGA-DK-A6AW-01 17 29163030 29163030 T G ATAD5 Nonsense_Mutation p.L644* 0.52 TCGA-DK-A6AW-01 17 29226679 29226679 T G TEFM Intron 0.40 TCGA-DK-A6AW-01 17 29311758 29311758 G A RNF135 Missense_Mutation p.E166K 0.43 tolerated(0.36) benign(0.023) TCGA-DK-A6AW-01 17 293246 293246 G T FAM101B Missense_Mutation p.F48L 0.41 deleterious(0.04) possibly_damaging(0.58) TCGA-DK-A6AW-01 17 29508736 29508736 G A NF1 Nonsense_Mutation p.W221* 0.44 TCGA-DK-A6AW-01 17 29527462 29527462 G A NF1 Missense_Mutation p.R304Q 0.44 deleterious(0.01) benign(0.038) TCGA-DK-A6AW-01 17 29541484 29541484 G T NF1 Nonsense_Mutation p.E470* 0.39 TCGA-DK-A6AW-01 17 31075981 31075981 C T MYO1D Missense_Mutation p.R504Q 0.41 tolerated(0.05) possibly_damaging(0.611) TCGA-DK-A6AW-01 17 3144006 3144006 C A OR1D4 RNA 0.29 TCGA-DK-A6AW-01 17 33269617 33269617 C A CCT6B Missense_Mutation p.E257D 0.40 tolerated(0.14) benign(0.095) TCGA-DK-A6AW-01 17 33434419 33434419 T C RAD51D Missense_Mutation p.E124G 0.42 deleterious(0.02) probably_damaging(0.962) TCGA-DK-A6AW-01 17 33491161 33491161 G A UNC45B Missense_Mutation p.R376H 0.44 tolerated(0.69) benign(0.013) TCGA-DK-A6AW-01 17 33592518 33592518 G T SLFN5 Missense_Mutation p.D763Y 0.43 tolerated(0.81) benign(0) TCGA-DK-A6AW-01 17 33689908 33689908 C A SLFN11 Nonsense_Mutation p.E307* 0.36 TCGA-DK-A6AW-01 17 33750021 33750021 C T SLFN12 Silent p.T9T 0.38 TCGA-DK-A6AW-01 17 33771645 33771645 T A SLFN13 Missense_Mutation p.D352V 0.40 deleterious(0.01) possibly_damaging(0.729) TCGA-DK-A6AW-01 17 33849610 33849610 C T SLFN12L 5'UTR 0.52 TCGA-DK-A6AW-01 17 3397675 3397675 C A ASPA Silent p.V222V 0.43 TCGA-DK-A6AW-01 17 34105977 34105977 A G MMP28 Silent p.S98S 0.42 TCGA-DK-A6AW-01 17 34324748 34324748 G T CCL15 3'UTR 0.44 TCGA-DK-A6AW-01 17 3436052 3436052 C T TRPV3 Missense_Mutation p.D322N 0.45 tolerated(0.38) benign(0.207) TCGA-DK-A6AW-01 17 34499227 34499227 G A TBC1D3B Nonsense_Mutation p.R162* 0.12 TCGA-DK-A6AW-01 17 34859029 34859029 C T MYO19 Missense_Mutation p.R663Q 0.38 tolerated(1) benign(0.003) TCGA-DK-A6AW-01 17 35295442 35295442 G A LHX1 5'UTR 0.39 TCGA-DK-A6AW-01 17 35945489 35945489 G A SYNRG Missense_Mutation p.R141C 0.42 deleterious(0) probably_damaging(0.988) TCGA-DK-A6AW-01 17 36359043 36359043 C A RP11-1407O15.2 Splice_Site p.X217_splice 0.12 TCGA-DK-A6AW-01 17 36484747 36484747 C T GPR179 Missense_Mutation p.A1569T 0.39 tolerated(0.27) benign(0.015) TCGA-DK-A6AW-01 17 3653748 3653748 C T ITGAE Missense_Mutation p.G641E 0.35 deleterious(0.02) possibly_damaging(0.798) TCGA-DK-A6AW-01 17 36708268 36708268 C T SRCIN1 Missense_Mutation p.E861K 0.34 deleterious(0.02) benign(0.046) TCGA-DK-A6AW-01 17 37074951 37074951 G A LASP1 Missense_Mutation p.D236N 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 17 37187848 37187848 G A CTD-2206N4.2 5'Flank 0.59 TCGA-DK-A6AW-01 17 37190424 37190424 A C LRRC37A11P Intron 0.53 TCGA-DK-A6AW-01 17 37265612 37265612 G A PLXDC1 Silent p.L96L 0.46 TCGA-DK-A6AW-01 17 37580883 37580883 T G MED1 Missense_Mutation p.K283T 0.47 tolerated(0.19) benign(0.437) TCGA-DK-A6AW-01 17 37649082 37649082 T C CDK12 Silent p.I729I 0.49 TCGA-DK-A6AW-01 17 37676315 37676315 G A CDK12 Missense_Mutation p.E1024K 0.22 benign(0.36) TCGA-DK-A6AW-01 17 37818531 37818531 C T STARD3 Silent p.I389I 0.43 TCGA-DK-A6AW-01 17 3819647 3819647 C T P2RX1 5'UTR 0.32 TCGA-DK-A6AW-01 17 38813721 38813721 G T KRT222 Missense_Mutation p.S181Y 0.42 tolerated(0.2) benign(0.352) TCGA-DK-A6AW-01 17 38975793 38975793 C T KRT10 Missense_Mutation p.R450H 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A6AW-01 17 39086303 39086303 G A KRT23 Silent p.V175V 0.46 TCGA-DK-A6AW-01 17 3917765 3917765 G A ZZEF1 Silent p.F2730F 0.50 TCGA-DK-A6AW-01 17 39567645 39567645 C T AC003958.2 RNA 0.48 TCGA-DK-A6AW-01 17 3990781 3990781 G A ZZEF1 Silent p.F763F 0.52 TCGA-DK-A6AW-01 17 39959677 39959677 G A LEPREL4 Silent p.L385L 0.35 TCGA-DK-A6AW-01 17 39983699 39983699 T G NT5C3B Missense_Mutation p.K249N 0.47 deleterious(0.02) probably_damaging(0.979) TCGA-DK-A6AW-01 17 40328257 40328257 G A KCNH4 Missense_Mutation p.S215F 0.48 deleterious(0) possibly_damaging(0.498) TCGA-DK-A6AW-01 17 40556794 40556794 G A PTRF Missense_Mutation p.R362W 0.57 tolerated(0.08) benign(0.335) TCGA-DK-A6AW-01 17 40721523 40721523 A C MLX Splice_Site p.X180_splice 0.39 TCGA-DK-A6AW-01 17 40855800 40855800 G A EZH1 Nonsense_Mutation p.R686* 0.39 TCGA-DK-A6AW-01 17 40940748 40940748 A C WNK4 Missense_Mutation p.N697T 0.48 deleterious(0) unknown(0) TCGA-DK-A6AW-01 17 40963002 40963002 C T BECN1 Intron 0.55 TCGA-DK-A6AW-01 17 41370030 41370030 C A TMEM106A 3'UTR 0.50 TCGA-DK-A6AW-01 17 4172713 4172713 T G UBE2G1 3'UTR 0.64 TCGA-DK-A6AW-01 17 41960673 41960673 G T MPP2 Missense_Mutation p.N67K 0.33 deleterious(0) possibly_damaging(0.802) TCGA-DK-A6AW-01 17 42090507 42090507 C T TMEM101 Missense_Mutation p.R112H 0.53 deleterious(0) probably_damaging(0.923) TCGA-DK-A6AW-01 17 42287580 42287580 T G UBTF Missense_Mutation p.K513T 0.41 tolerated(0.11) possibly_damaging(0.642) TCGA-DK-A6AW-01 17 42427048 42427048 G A GRN Missense_Mutation p.G93E 0.52 tolerated(0.32) possibly_damaging(0.809) TCGA-DK-A6AW-01 17 42745164 42745164 T G C17orf104 Missense_Mutation p.L629V 0.38 tolerated(0.07) possibly_damaging(0.599) TCGA-DK-A6AW-01 17 43008979 43008979 C T KIF18B Missense_Mutation p.R503H 0.45 tolerated(0.66) benign(0.002) TCGA-DK-A6AW-01 17 43196221 43196221 C T PLCD3 Missense_Mutation p.A292T 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 43220893 43220893 C T ACBD4 Missense_Mutation p.S304L 0.42 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-DK-A6AW-01 17 44110543 44110543 C T KANSL1 Missense_Mutation p.D914N 0.31 deleterious(0.01) probably_damaging(1) TCGA-DK-A6AW-01 17 44115975 44115975 G A KANSL1 Nonsense_Mutation p.R824* 0.54 TCGA-DK-A6AW-01 17 44803958 44803958 T G NSF Missense_Mutation p.V602G 0.46 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 17 45452066 45452066 T G EFCAB13 Missense_Mutation p.F369C 0.38 deleterious(0.01) probably_damaging(0.94) TCGA-DK-A6AW-01 17 45456599 45456599 G A EFCAB13 Missense_Mutation p.R521Q 0.50 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 17 45776733 45776733 C T TBKBP1 Missense_Mutation p.R228W 0.33 deleterious(0) probably_damaging(0.965) TCGA-DK-A6AW-01 17 45914364 45914364 C T LRRC46 Missense_Mutation p.P282S 0.44 tolerated(0.54) benign(0.004) TCGA-DK-A6AW-01 17 46608135 46608135 G A HOXB1 Silent p.S44S 0.53 TCGA-DK-A6AW-01 17 46655715 46655715 A C HOXB4 5'UTR 0.24 TCGA-DK-A6AW-01 17 47009064 47009064 T C SNF8 Missense_Mutation p.T194A 0.53 deleterious(0.03) benign(0.442) TCGA-DK-A6AW-01 17 47486461 47486461 G A PHB Silent p.S151S 0.58 TCGA-DK-A6AW-01 17 48051160 48051160 C A DLX4 Missense_Mutation p.F192L 0.45 tolerated(0.15) benign(0.004) TCGA-DK-A6AW-01 17 4805238 4805238 C T CHRNE Silent p.S163S 0.36 TCGA-DK-A6AW-01 17 48245364 48245364 G T SGCA Missense_Mutation p.E123D 0.42 tolerated(0.62) benign(0.001) TCGA-DK-A6AW-01 17 48447889 48447889 C A MRPL27 Missense_Mutation p.K33N 0.47 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 48539577 48539577 A C ACSF2 Missense_Mutation p.Q180H 0.40 tolerated(0.12) benign(0.366) TCGA-DK-A6AW-01 17 48598515 48598515 C T MYCBPAP Missense_Mutation p.R364W 0.29 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 4876485 4876485 G T CAMTA2 Missense_Mutation p.F778L 0.41 tolerated(0.05) probably_damaging(0.983) TCGA-DK-A6AW-01 17 50212407 50212407 C T CA10 Intron 0.33 TCGA-DK-A6AW-01 17 5045423 5045423 T G USP6 Missense_Mutation p.Y567D 0.42 tolerated_low_confidence(0.15) probably_damaging(0.925) TCGA-DK-A6AW-01 17 5048806 5048806 G A USP6 Missense_Mutation p.R700Q 0.39 deleterious_low_confidence(0.01) benign(0.028) TCGA-DK-A6AW-01 17 5076100 5076100 G A USP6 Missense_Mutation p.E1350K 0.43 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-DK-A6AW-01 17 5085457 5085457 G A ZNF594 Missense_Mutation p.R699W 0.44 deleterious(0.01) benign(0.066) TCGA-DK-A6AW-01 17 51902342 51902342 G T KIF2B Missense_Mutation p.D650Y 0.43 deleterious(0.02) benign(0.305) TCGA-DK-A6AW-01 17 5257685 5257685 G T RABEP1 Missense_Mutation p.R332I 0.23 tolerated(0.19) benign(0.012) TCGA-DK-A6AW-01 17 54554977 54554977 C A ANKFN1 Silent p.L637L 0.36 TCGA-DK-A6AW-01 17 55183823 55183823 G T AKAP1 Missense_Mutation p.R333I 0.39 deleterious(0.04) benign(0.137) TCGA-DK-A6AW-01 17 56060586 56060587 - T VEZF1 Frame_Shift_Ins p.E68Rfs*14 0.34 TCGA-DK-A6AW-01 17 56344801 56344801 G T LPO Missense_Mutation p.K595N 0.40 deleterious(0) possibly_damaging(0.546) TCGA-DK-A6AW-01 17 56393466 56393466 C A BZRAP1 Missense_Mutation p.E672D 0.39 tolerated(0.28) benign(0.418) TCGA-DK-A6AW-01 17 56432196 56432196 G T RNF43 3'UTR 0.45 TCGA-DK-A6AW-01 17 56606624 56606624 T G SEPT4 Intron 0.54 TCGA-DK-A6AW-01 17 56638903 56638903 C A TEX14 Missense_Mutation p.D1425Y 0.07 deleterious(0) probably_damaging(0.91) TCGA-DK-A6AW-01 17 56676846 56676846 G A TEX14 Silent p.F626F 0.41 TCGA-DK-A6AW-01 17 57057639 57057639 G T PPM1E Missense_Mutation p.E505D 0.45 deleterious_low_confidence(0.03) benign(0.02) TCGA-DK-A6AW-01 17 57275147 57275147 T G CTD-2510F5.6 Missense_Mutation p.F44L 0.50 tolerated_low_confidence(0.08) benign(0) TCGA-DK-A6AW-01 17 57758372 57758372 C A CLTC Missense_Mutation p.L1007M 0.38 deleterious(0.03) probably_damaging(1) TCGA-DK-A6AW-01 17 58013630 58013630 G T RPS6KB1 Nonsense_Mutation p.E345* 0.43 TCGA-DK-A6AW-01 17 58022809 58022809 G T RP11-178C3.1 Nonsense_Mutation p.E27* 0.24 TCGA-DK-A6AW-01 17 58236632 58236632 G A CA4 Silent p.Q262Q 0.62 TCGA-DK-A6AW-01 17 58511582 58511582 C T C17orf64 3'Flank 0.40 TCGA-DK-A6AW-01 17 59969033 59969033 C T INTS2 Silent p.Q580Q 0.52 TCGA-DK-A6AW-01 17 60130028 60130028 C A MED13 Nonsense_Mutation p.E114* 0.41 TCGA-DK-A6AW-01 17 60657512 60657512 T G TLK2 Missense_Mutation p.L443V 0.59 deleterious(0.04) possibly_damaging(0.868) TCGA-DK-A6AW-01 17 61499407 61499407 C T TANC2 3'UTR 0.50 TCGA-DK-A6AW-01 17 61560533 61560533 C T ACE Nonsense_Mutation p.R496* 0.45 TCGA-DK-A6AW-01 17 61710043 61710043 G A MAP3K3 Missense_Mutation p.E3K 0.44 deleterious_low_confidence(0.05) benign(0.362) TCGA-DK-A6AW-01 17 61841470 61841470 C A CCDC47 Missense_Mutation p.M151I 0.44 tolerated(0.73) benign(0.009) TCGA-DK-A6AW-01 17 61885158 61885158 C A DDX42 Missense_Mutation p.F307L 0.12 deleterious(0) probably_damaging(0.969) TCGA-DK-A6AW-01 17 61888507 61888507 C T DDX42 Nonsense_Mutation p.R458* 0.40 TCGA-DK-A6AW-01 17 61914375 61914375 C T SMARCD2 Silent p.A158A 0.52 TCGA-DK-A6AW-01 17 62018120 62018120 G A SCN4A 3'UTR 0.42 TCGA-DK-A6AW-01 17 62036709 62036709 G A SCN4A Silent p.F645F 0.42 TCGA-DK-A6AW-01 17 62801186 62801186 G T PLEKHM1P RNA 0.39 TCGA-DK-A6AW-01 17 62892842 62892842 C T LRRC37A3 Silent p.Q178Q 0.19 TCGA-DK-A6AW-01 17 63204069 63204069 G A RGS9 Silent p.P411P 0.36 TCGA-DK-A6AW-01 17 6328746 6328746 C T AIPL1 3'UTR 0.40 TCGA-DK-A6AW-01 17 63554649 63554649 T G AXIN2 Missense_Mutation p.E30D 0.51 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 17 6376071 6376071 C T PITPNM3 Silent p.E445E 0.08 TCGA-DK-A6AW-01 17 64026142 64026142 C A CEP112 Splice_Site p.X407_splice 0.44 TCGA-DK-A6AW-01 17 65197291 65197291 A G HELZ Missense_Mutation p.V128A 0.44 tolerated_low_confidence(0.07) benign(0.036) TCGA-DK-A6AW-01 17 65340859 65340859 G A PSMD12 Missense_Mutation p.R316C 0.56 deleterious(0) benign(0.059) TCGA-DK-A6AW-01 17 65353461 65353461 T G PSMD12 Missense_Mutation p.E85D 0.24 tolerated(0.22) benign(0.012) TCGA-DK-A6AW-01 17 65870932 65870932 G T BPTF Splice_Site p.X554_splice 0.42 TCGA-DK-A6AW-01 17 65907510 65907510 C T BPTF Silent p.V1170V 0.51 TCGA-DK-A6AW-01 17 65908454 65908454 C T BPTF Missense_Mutation p.S1485L 0.41 benign(0.048) TCGA-DK-A6AW-01 17 66041889 66041889 C T KPNA2 Missense_Mutation p.A450V 0.42 tolerated(0.06) benign(0.115) TCGA-DK-A6AW-01 17 66425047 66425047 C T WIPI1 Silent p.A332A 0.27 TCGA-DK-A6AW-01 17 66537089 66537089 T C FAM20A Missense_Mutation p.N374D 0.29 tolerated(0.85) possibly_damaging(0.838) TCGA-DK-A6AW-01 17 6690802 6690802 C A FBXO39 3'UTR 0.47 TCGA-DK-A6AW-01 17 66914237 66914237 G A ABCA8 Silent p.R626R 0.43 TCGA-DK-A6AW-01 17 66933114 66933114 C A ABCA8 Missense_Mutation p.K148N 0.35 tolerated(0.31) benign(0.158) TCGA-DK-A6AW-01 17 66938122 66938122 C A ABCA8 Missense_Mutation p.K18N 0.49 deleterious(0) probably_damaging(0.979) TCGA-DK-A6AW-01 17 66938165 66938165 C A ABCA8 Missense_Mutation p.R4I 0.46 deleterious(0) probably_damaging(0.921) TCGA-DK-A6AW-01 17 67039746 67039746 G T ABCA9 Missense_Mutation p.F228L 0.44 tolerated(0.3) benign(0.06) TCGA-DK-A6AW-01 17 67081179 67081179 C T ABCA6 Missense_Mutation p.A1392T 0.39 tolerated(0.41) benign(0.013) TCGA-DK-A6AW-01 17 67136855 67136855 C T ABCA6 5'UTR 0.41 TCGA-DK-A6AW-01 17 67283829 67283829 G T ABCA5 Missense_Mutation p.L656I 0.47 deleterious(0.03) benign(0.303) TCGA-DK-A6AW-01 17 7005486 7005486 G A ASGR2 Silent p.F231F 0.45 TCGA-DK-A6AW-01 17 7005511 7005511 A C ASGR2 Missense_Mutation p.F223C 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 17 7187649 7187649 C T SLC2A4 Silent p.S226S 0.49 TCGA-DK-A6AW-01 17 7189781 7189781 G T SLC2A4 Missense_Mutation p.V455F 0.48 tolerated(0.44) benign(0.248) TCGA-DK-A6AW-01 17 7220856 7220856 C A NEURL4 Missense_Mutation p.K1414N 0.52 deleterious(0.05) possibly_damaging(0.559) TCGA-DK-A6AW-01 17 72239552 72239552 C A TTYH2 Silent p.V225V 0.45 TCGA-DK-A6AW-01 17 72346560 72346560 G A KIF19 Missense_Mutation p.G412R 0.50 tolerated(0.07) benign(0.002) TCGA-DK-A6AW-01 17 72350550 72350550 C T KIF19 Missense_Mutation p.A853V 0.48 tolerated(0.22) benign(0.004) TCGA-DK-A6AW-01 17 72366742 72366742 C T GPR142 Silent p.I147I 0.64 TCGA-DK-A6AW-01 17 72741462 72741462 C T RAB37 Missense_Mutation p.A200V 0.37 tolerated(0.1) benign(0.064) TCGA-DK-A6AW-01 17 72781652 72781652 T C TMEM104 Missense_Mutation p.V26A 0.49 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 17 73228994 73228994 G A NUP85 Missense_Mutation p.R482H 0.47 deleterious(0.05) possibly_damaging(0.786) TCGA-DK-A6AW-01 17 73240753 73240753 C A GGA3 Nonsense_Mutation p.E83* 0.47 TCGA-DK-A6AW-01 17 73389716 73389716 C T GRB2 5'UTR 0.40 TCGA-DK-A6AW-01 17 7348685 7348685 T C CHRNB1 Missense_Mutation p.V52A 0.38 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 17 73627573 73627573 C T RECQL5 Missense_Mutation p.E469K 0.41 deleterious(0.01) possibly_damaging(0.709) TCGA-DK-A6AW-01 17 7369927 7369927 A G ZBTB4 Missense_Mutation p.L65P 0.42 unknown(0) TCGA-DK-A6AW-01 17 74060169 74060169 C T SRP68 Missense_Mutation p.R150Q 0.47 deleterious(0) probably_damaging(0.985) TCGA-DK-A6AW-01 17 74148488 74148488 G A RNF157 Silent p.I623I 0.50 TCGA-DK-A6AW-01 17 74287695 74287695 C T QRICH2 Missense_Mutation p.R872Q 0.42 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 17 7464115 7464115 C T TNFSF12-TNFSF13 Missense_Mutation p.P320S 0.41 tolerated_low_confidence(0.16) probably_damaging(0.975) TCGA-DK-A6AW-01 17 7478046 7478046 T C EIF4A1 Intron 0.46 TCGA-DK-A6AW-01 17 7481193 7481193 C T EIF4A1 Missense_Mutation p.R319C 0.51 deleterious(0.02) benign(0.144) TCGA-DK-A6AW-01 17 74936537 74936537 C T MGAT5B Silent p.I555I 0.38 TCGA-DK-A6AW-01 17 75208041 75208041 C A SEC14L1 Missense_Mutation p.Q541K 0.49 tolerated(0.17) benign(0.167) TCGA-DK-A6AW-01 17 7534049 7534049 T G SHBG Missense_Mutation p.F85L 0.43 tolerated(0.15) benign(0.282) TCGA-DK-A6AW-01 17 7536700 7536700 T G SHBG 3'Flank 0.56 TCGA-DK-A6AW-01 17 7592301 7592301 G A WRAP53 Missense_Mutation p.S112N 0.49 tolerated_low_confidence(0.46) benign(0.18) TCGA-DK-A6AW-01 17 76094445 76094445 C T TNRC6C Missense_Mutation p.S1479L 0.43 tolerated(0.14) probably_damaging(0.994) TCGA-DK-A6AW-01 17 7611546 7611546 G A EFNB3 Silent p.S131S 0.46 TCGA-DK-A6AW-01 17 76487558 76487558 G A DNAH17 Silent p.I2198I 0.46 TCGA-DK-A6AW-01 17 7668874 7668874 G A DNAH2 Missense_Mutation p.E1168K 0.40 benign(0.018) TCGA-DK-A6AW-01 17 77709183 77709183 C T ENPP7 Silent p.H247H 0.43 TCGA-DK-A6AW-01 17 78039373 78039373 C T CCDC40 Silent p.D510D 0.50 TCGA-DK-A6AW-01 17 78110043 78110043 C A EIF4A3 Nonsense_Mutation p.E359* 0.50 TCGA-DK-A6AW-01 17 78409985 78409985 G A ENDOV 3'UTR 0.29 TCGA-DK-A6AW-01 17 78447143 78447143 C T NPTX1 Missense_Mutation p.A252T 0.46 tolerated(0.06) possibly_damaging(0.775) TCGA-DK-A6AW-01 17 7948570 7948570 C A ALOX15B Missense_Mutation p.F288L 0.44 deleterious(0) possibly_damaging(0.491) TCGA-DK-A6AW-01 17 79612315 79612315 C A TSPAN10 Missense_Mutation p.L112M 0.46 deleterious(0.05) possibly_damaging(0.82) TCGA-DK-A6AW-01 17 8018301 8018301 T G ALOXE3 Missense_Mutation p.K302T 0.41 deleterious(0.01) benign(0.177) TCGA-DK-A6AW-01 17 80274777 80274777 G A CD7 Missense_Mutation p.R55C 0.45 tolerated(0.18) possibly_damaging(0.759) TCGA-DK-A6AW-01 17 80395196 80395196 C T HEXDC Missense_Mutation p.P286S 0.43 tolerated(0.06) benign(0.054) TCGA-DK-A6AW-01 17 80426645 80426645 T G NARF Missense_Mutation p.C86W 0.45 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 17 8108195 8108195 G A AURKB Silent p.V343V 0.42 TCGA-DK-A6AW-01 17 8422097 8422097 C A MYH10 Nonsense_Mutation p.E786* 0.33 TCGA-DK-A6AW-01 17 8701947 8701947 A C MFSD6L Silent p.T164T 0.41 TCGA-DK-A6AW-01 17 9501561 9501561 C T WDR16 Nonsense_Mutation p.R183* 0.46 TCGA-DK-A6AW-01 17 9515734 9515734 T C WDR16 Silent p.D321D 0.50 TCGA-DK-A6AW-01 17 9850237 9850237 C T GAS7 Missense_Mutation p.E197K 0.44 tolerated(0.19) benign(0.204) TCGA-DK-A6AW-01 18 10671435 10671435 G A PIEZO2 3'Flank 0.44 TCGA-DK-A6AW-01 18 12420378 12420378 G T SLMO1 Missense_Mutation p.M29I 0.52 tolerated(0.08) probably_damaging(0.992) TCGA-DK-A6AW-01 18 14534948 14534948 A C POTEC Missense_Mutation p.F290C 0.13 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 18 18547870 18547870 C T ROCK1 Missense_Mutation p.R1012Q 0.40 deleterious(0) probably_damaging(0.968) TCGA-DK-A6AW-01 18 19996002 19996002 T C CTAGE1 Silent p.Q591Q 0.43 TCGA-DK-A6AW-01 18 19996048 19996048 A C CTAGE1 Missense_Mutation p.F576C 0.53 deleterious(0.04) possibly_damaging(0.753) TCGA-DK-A6AW-01 18 22805423 22805423 G A ZNF521 Missense_Mutation p.A820V 0.45 tolerated(0.6) probably_damaging(0.988) TCGA-DK-A6AW-01 18 24436207 24436207 C A AQP4 Missense_Mutation p.D314Y 0.44 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-DK-A6AW-01 18 25532174 25532174 G A CDH2 Silent p.N888N 0.47 TCGA-DK-A6AW-01 18 25565518 25565518 C A CDH2 Missense_Mutation p.R650I 0.38 deleterious(0.03) possibly_damaging(0.877) TCGA-DK-A6AW-01 18 25616509 25616509 A C CDH2 Intron 0.40 TCGA-DK-A6AW-01 18 2890656 2890656 G T EMILIN2 Missense_Mutation p.Q177H 0.40 deleterious(0.02) possibly_damaging(0.646) TCGA-DK-A6AW-01 18 29102104 29102104 G A DSG2 Silent p.S194S 0.52 TCGA-DK-A6AW-01 18 30091775 30091775 C A WBP11P1 RNA 0.54 TCGA-DK-A6AW-01 18 30092250 30092250 T G WBP11P1 RNA 0.38 TCGA-DK-A6AW-01 18 31311952 31311952 A G ASXL3 Silent p.L300L 0.40 TCGA-DK-A6AW-01 18 31320283 31320283 T G ASXL3 Missense_Mutation p.F972C 0.35 probably_damaging(0.999) TCGA-DK-A6AW-01 18 31323146 31323146 G A ASXL3 Missense_Mutation p.A1112T 0.45 probably_damaging(0.998) TCGA-DK-A6AW-01 18 31432905 31432905 G T NOL4 Silent p.I606I 0.65 TCGA-DK-A6AW-01 18 320014 320014 A C COLEC12 3'UTR 0.49 TCGA-DK-A6AW-01 18 32833511 32833511 T C ZSCAN30 Missense_Mutation p.H463R 0.44 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 18 32887048 32887048 T G ZNF271 RNA 0.48 TCGA-DK-A6AW-01 18 32949573 32949573 G T ZNF396 Missense_Mutation p.S205Y 0.51 tolerated(0.11) probably_damaging(0.919) TCGA-DK-A6AW-01 18 33271151 33271151 C A GALNT1 Missense_Mutation p.S385Y 0.43 tolerated(0.33) benign(0.325) TCGA-DK-A6AW-01 18 33613702 33613702 C A RPRD1A Missense_Mutation p.V84F 0.38 tolerated(0.06) possibly_damaging(0.562) TCGA-DK-A6AW-01 18 33613714 33613714 C A RPRD1A Missense_Mutation p.D80Y 0.52 deleterious(0) possibly_damaging(0.873) TCGA-DK-A6AW-01 18 33952676 33952676 G A FHOD3 Silent p.T102T 0.50 TCGA-DK-A6AW-01 18 35145434 35145434 G T CELF4 Missense_Mutation p.F57L 0.40 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 18 3534596 3534596 C T DLGAP1 Missense_Mutation p.R692Q 0.38 deleterious(0.02) probably_damaging(0.99) TCGA-DK-A6AW-01 18 43497741 43497741 G A EPG5 Silent p.L1048L 0.42 TCGA-DK-A6AW-01 18 43529494 43529494 G A EPG5 Nonsense_Mutation p.R485* 0.43 TCGA-DK-A6AW-01 18 43664269 43664269 G T ATP5A1 Missense_Mutation p.F547L 0.57 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-DK-A6AW-01 18 44260327 44260327 G A ST8SIA5 Missense_Mutation p.S270L 0.48 probably_damaging(0.946) TCGA-DK-A6AW-01 18 44554605 44554605 G A TCEB3C Nonsense_Mutation p.R537* 0.04 TCGA-DK-A6AW-01 18 44555054 44555054 C T TCEB3C Missense_Mutation p.R387Q 0.04 tolerated(0.05) benign(0.048) TCGA-DK-A6AW-01 18 44595615 44595615 C A KATNAL2 Missense_Mutation p.L212I 0.37 deleterious(0.03) probably_damaging(0.967) TCGA-DK-A6AW-01 18 47769276 47769276 C A CCDC11 Nonsense_Mutation p.E403* 0.05 TCGA-DK-A6AW-01 18 48446835 48446835 G A ME2 Silent p.R248R 0.37 TCGA-DK-A6AW-01 18 48473692 48473692 C T ME2 3'UTR 0.50 TCGA-DK-A6AW-01 18 48510708 48510708 G T ELAC1 Nonsense_Mutation p.E134* 0.39 TCGA-DK-A6AW-01 18 50985606 50985606 C T DCC Missense_Mutation p.R1133W 0.47 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 18 51886900 51886900 T C C18orf54 5'UTR 0.34 TCGA-DK-A6AW-01 18 52928698 52928698 G A TCF4 Missense_Mutation p.S432L 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 18 53254307 53254307 T C TCF4 Missense_Mutation p.K116R 0.60 deleterious(0.02) possibly_damaging(0.88) TCGA-DK-A6AW-01 18 54291624 54291624 A C TXNL1 Missense_Mutation p.I88M 0.44 deleterious(0.01) benign(0.214) TCGA-DK-A6AW-01 18 55238688 55238688 C A FECH Missense_Mutation p.K139N 0.38 tolerated(0.19) possibly_damaging(0.731) TCGA-DK-A6AW-01 18 56246852 56246852 G A ALPK2 Missense_Mutation p.R386W 0.11 tolerated(0.1) benign(0) TCGA-DK-A6AW-01 18 56247202 56247202 T G ALPK2 Missense_Mutation p.Y269S 0.41 deleterious(0) benign(0.32) TCGA-DK-A6AW-01 18 56897783 56897783 A G GRP 3'UTR 0.44 TCGA-DK-A6AW-01 18 59931281 59931281 C T KIAA1468 Missense_Mutation p.R804C 0.47 deleterious(0) possibly_damaging(0.784) TCGA-DK-A6AW-01 18 60241659 60241659 C T ZCCHC2 Missense_Mutation p.S782L 0.39 deleterious(0.02) benign(0.178) TCGA-DK-A6AW-01 18 60986020 60986020 C A BCL2 5'UTR 0.62 TCGA-DK-A6AW-01 18 61305118 61305118 G T SERPINB4 Silent p.V336V 0.54 TCGA-DK-A6AW-01 18 64172012 64172012 A G CDH19 3'UTR 0.50 TCGA-DK-A6AW-01 18 64172258 64172258 C T CDH19 Missense_Mutation p.E704K 0.47 tolerated(0.84) possibly_damaging(0.611) TCGA-DK-A6AW-01 18 65178568 65178568 G A DSEL Missense_Mutation p.S1103L 0.38 tolerated(0.22) benign(0.004) TCGA-DK-A6AW-01 18 66381087 66381087 C A TMX3 Nonsense_Mutation p.E33* 0.29 TCGA-DK-A6AW-01 18 66564537 66564537 G T CCDC102B Nonsense_Mutation p.E379* 0.43 TCGA-DK-A6AW-01 18 6889954 6889954 T G ARHGAP28 Missense_Mutation p.I376S 0.47 deleterious(0) probably_damaging(0.959) TCGA-DK-A6AW-01 18 6955399 6955399 T C LAMA1 Silent p.Q2720Q 0.55 TCGA-DK-A6AW-01 18 7043400 7043400 A G LAMA1 Silent p.C327C 0.41 TCGA-DK-A6AW-01 18 72178240 72178240 T G CNDP2 Missense_Mutation p.F217V 0.39 tolerated(0.66) possibly_damaging(0.557) TCGA-DK-A6AW-01 18 72244143 72244143 G A CNDP1 Missense_Mutation p.G294E 0.45 deleterious(0.03) probably_damaging(0.997) TCGA-DK-A6AW-01 18 7232012 7232012 C T LRRC30 Silent p.F292F 0.48 TCGA-DK-A6AW-01 18 72343146 72343146 G T ZNF407 Silent p.S57S 0.56 TCGA-DK-A6AW-01 18 72345583 72345583 A C ZNF407 Silent p.R870R 0.25 TCGA-DK-A6AW-01 18 724561 724561 C A YES1 Nonsense_Mutation p.E499* 0.40 TCGA-DK-A6AW-01 18 72775506 72775506 C T ZNF407 Silent p.V1943V 0.33 TCGA-DK-A6AW-01 18 72999405 72999405 G A TSHZ1 Silent p.P636P 0.41 TCGA-DK-A6AW-01 18 739801 739801 T G YES1 Missense_Mutation p.L357F 0.57 deleterious(0) probably_damaging(0.963) TCGA-DK-A6AW-01 18 76754550 76754550 C A SALL3 Silent p.V853V 0.47 TCGA-DK-A6AW-01 18 77227454 77227454 C A NFATC1 Missense_Mutation p.S642Y 0.33 deleterious(0.04) probably_damaging(0.956) TCGA-DK-A6AW-01 18 905312 905312 G T ADCYAP1 5'UTR 0.40 TCGA-DK-A6AW-01 19 10078727 10078727 C T COL5A3 Missense_Mutation p.G1448D 0.41 unknown(0) TCGA-DK-A6AW-01 19 1012506 1012506 G A TMEM259 Missense_Mutation p.A225V 0.55 tolerated(0.07) benign(0.403) TCGA-DK-A6AW-01 19 10286250 10286250 G A DNMT1 Missense_Mutation p.S205L 0.42 tolerated_low_confidence(0.3) benign(0.004) TCGA-DK-A6AW-01 19 10398057 10398057 G A ICAM4 Nonsense_Mutation p.W123* 0.27 TCGA-DK-A6AW-01 19 1041326 1041326 T G ABCA7 5'UTR 0.42 TCGA-DK-A6AW-01 19 10748335 10748335 T C SLC44A2 Missense_Mutation p.F536S 0.46 deleterious(0.03) benign(0.392) TCGA-DK-A6AW-01 19 11347233 11347233 G T DOCK6 Missense_Mutation p.F727L 0.39 deleterious(0.01) possibly_damaging(0.903) TCGA-DK-A6AW-01 19 11473304 11473304 G A DKFZP761J1410 Missense_Mutation p.R235Q 0.39 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 19 11508131 11508131 C T RGL3 Missense_Mutation p.R636Q 0.46 deleterious(0.01) unknown(0) TCGA-DK-A6AW-01 19 11727866 11727866 G A ZNF627 Missense_Mutation p.R183Q 0.38 tolerated(1) probably_damaging(0.994) TCGA-DK-A6AW-01 19 11833054 11833054 C T ZNF823 Missense_Mutation p.R432Q 0.38 tolerated(0.48) benign(0.03) TCGA-DK-A6AW-01 19 11977098 11977098 C A ZNF439 Missense_Mutation p.L43I 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 19 12089969 12089969 G A ZNF763 3'UTR 0.43 TCGA-DK-A6AW-01 19 12090858 12090858 C A ZNF763 3'UTR 0.45 TCGA-DK-A6AW-01 19 12090927 12090927 G A ZNF763 3'UTR 0.57 TCGA-DK-A6AW-01 19 12125781 12125781 C T ZNF433 Missense_Mutation p.R634Q 0.41 tolerated(0.58) benign(0.033) TCGA-DK-A6AW-01 19 12154851 12154851 T C ZNF878 Silent p.Q455Q 0.43 TCGA-DK-A6AW-01 19 12156003 12156003 G T ZNF878 Silent p.L71L 0.73 TCGA-DK-A6AW-01 19 12184861 12184861 G A ZNF844 Missense_Mutation p.E7K 0.47 tolerated(0.06) possibly_damaging(0.881) TCGA-DK-A6AW-01 19 12187085 12187085 G T ZNF844 Nonsense_Mutation p.E384* 0.43 TCGA-DK-A6AW-01 19 12187752 12187752 A C ZNF844 Missense_Mutation p.E606A 0.39 tolerated_low_confidence(0.59) benign(0.001) TCGA-DK-A6AW-01 19 12297614 12297614 A G ZNF136 Missense_Mutation p.T141A 0.41 tolerated(0.08) benign(0.034) TCGA-DK-A6AW-01 19 12298794 12298794 A G ZNF136 Missense_Mutation p.K534R 0.14 deleterious(0.04) benign(0) TCGA-DK-A6AW-01 19 12384012 12384012 C T ZNF44 Missense_Mutation p.R401Q 0.42 tolerated(0.89) benign(0.024) TCGA-DK-A6AW-01 19 12460983 12460983 G T ZNF442 Missense_Mutation p.F472L 0.46 tolerated(0.65) benign(0.003) TCGA-DK-A6AW-01 19 12461518 12461518 T G ZNF442 Missense_Mutation p.K294T 0.55 tolerated(0.05) benign(0.004) TCGA-DK-A6AW-01 19 12576173 12576173 C A ZNF709 Missense_Mutation p.R188I 0.48 tolerated(0.15) probably_damaging(0.998) TCGA-DK-A6AW-01 19 12637435 12637435 T G ZNF564 Missense_Mutation p.E496A 0.48 tolerated(0.06) possibly_damaging(0.838) TCGA-DK-A6AW-01 19 12691749 12691749 G A ZNF490 Silent p.H380H 0.47 TCGA-DK-A6AW-01 19 1272563 1272563 C T CIRBP 3'UTR 0.61 TCGA-DK-A6AW-01 19 12739037 12739037 C T ZNF791 Nonsense_Mutation p.R232* 0.49 TCGA-DK-A6AW-01 19 12849339 12849339 T C ASNA1 Missense_Mutation p.V59A 0.51 tolerated(0.06) benign(0.12) TCGA-DK-A6AW-01 19 12874355 12874355 G A HOOK2 Missense_Mutation p.A666V 0.42 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 19 13247179 13247179 C T NACC1 Silent p.Y360Y 0.51 TCGA-DK-A6AW-01 19 1356434 1356434 T C MUM1 Silent p.L16L 0.51 TCGA-DK-A6AW-01 19 13870053 13870053 C T CCDC130 Silent p.F180F 0.45 TCGA-DK-A6AW-01 19 14043497 14043497 C A PODNL1 3'UTR 0.40 TCGA-DK-A6AW-01 19 14508891 14508891 C T CD97 Silent p.F279F 0.37 TCGA-DK-A6AW-01 19 14863201 14863201 C T EMR2 Silent p.S576S 0.31 TCGA-DK-A6AW-01 19 14876340 14876340 C T EMR2 Missense_Mutation p.S275N 0.24 deleterious(0.03) benign(0.127) TCGA-DK-A6AW-01 19 15052948 15052948 C A OR7C2 Missense_Mutation p.F216L 0.45 tolerated_low_confidence(0.08) benign(0.075) TCGA-DK-A6AW-01 19 15567035 15567035 G T RASAL3 Missense_Mutation p.A534D 0.53 deleterious(0.05) benign(0.309) TCGA-DK-A6AW-01 19 15739598 15739598 G A CYP4F8 RNA 0.40 TCGA-DK-A6AW-01 19 15871649 15871649 A C LLNLR-249E10.1 RNA 0.40 TCGA-DK-A6AW-01 19 15905108 15905108 G A OR10H5 Missense_Mutation p.D84N 0.49 tolerated(0.3) benign(0.337) TCGA-DK-A6AW-01 19 15917855 15917855 C T OR10H1 3'UTR 0.46 TCGA-DK-A6AW-01 19 16034713 16034713 C T CYP4F11 Missense_Mutation p.C276Y 0.39 deleterious(0.01) benign(0.011) TCGA-DK-A6AW-01 19 16275614 16275614 G T CIB3 Missense_Mutation p.L153M 0.44 tolerated(0.1) benign(0.351) TCGA-DK-A6AW-01 19 16790803 16790803 G A TMEM38A Missense_Mutation p.E45K 0.41 tolerated(0.19) probably_damaging(0.911) TCGA-DK-A6AW-01 19 16918561 16918561 G A NWD1 Missense_Mutation p.A1301T 0.40 tolerated(0.36) benign(0.096) TCGA-DK-A6AW-01 19 16974595 16974595 C T SIN3B Silent p.D489D 0.53 TCGA-DK-A6AW-01 19 17001213 17001213 C T F2RL3 Silent p.S313S 0.46 TCGA-DK-A6AW-01 19 17003899 17003899 A G CPAMD8 3'UTR 0.58 TCGA-DK-A6AW-01 19 17091331 17091331 G A CPAMD8 Missense_Mutation p.R568C 0.42 tolerated(0.09) benign(0.03) TCGA-DK-A6AW-01 19 17113151 17113151 T G CPAMD8 Missense_Mutation p.K275T 0.25 deleterious(0.02) benign(0.169) TCGA-DK-A6AW-01 19 17330599 17330599 C T USE1 Nonsense_Mutation p.R253* 0.46 TCGA-DK-A6AW-01 19 17471606 17471606 G A PLVAP Silent p.G405G 0.49 TCGA-DK-A6AW-01 19 17988864 17988864 G A SLC5A5 Missense_Mutation p.D311N 0.55 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 19 18684102 18684102 G A UBA52 Splice_Site 0.42 TCGA-DK-A6AW-01 19 18895847 18895847 G T COMP Silent p.V591V 0.40 TCGA-DK-A6AW-01 19 1924217 1924217 C A SCAMP4 Missense_Mutation p.F208L 0.27 tolerated(0.12) probably_damaging(0.989) TCGA-DK-A6AW-01 19 19338921 19338921 C A NCAN Missense_Mutation p.S831Y 0.44 deleterious(0.02) benign(0.325) TCGA-DK-A6AW-01 19 19375596 19375596 G A TM6SF2 Silent p.F337F 0.40 TCGA-DK-A6AW-01 19 19770598 19770598 G A ATP13A1 Silent p.G163G 0.43 TCGA-DK-A6AW-01 19 19790859 19790859 G A ZNF101 Missense_Mutation p.R354Q 0.32 tolerated(0.71) benign(0.416) TCGA-DK-A6AW-01 19 19823468 19823468 A C ZNF14 Missense_Mutation p.Y208D 0.44 tolerated(0.17) probably_damaging(0.999) TCGA-DK-A6AW-01 19 20003303 20003303 G T ZNF253 Missense_Mutation p.R416I 0.33 tolerated(0.46) benign(0.023) TCGA-DK-A6AW-01 19 20044176 20044176 A G ZNF93 Missense_Mutation p.T138A 0.51 tolerated(0.07) benign(0.032) TCGA-DK-A6AW-01 19 20806846 20806846 A G ZNF626 3'UTR 0.42 TCGA-DK-A6AW-01 19 20807986 20807986 C A ZNF626 Nonsense_Mutation p.E233* 0.40 TCGA-DK-A6AW-01 19 21132776 21132776 G T ZNF85 Nonsense_Mutation p.E486* 0.54 TCGA-DK-A6AW-01 19 21133183 21133183 A C ZNF85 3'UTR 0.27 TCGA-DK-A6AW-01 19 21239788 21239788 G T ZNF430 Missense_Mutation p.R225I 0.33 tolerated(0.31) benign(0.002) TCGA-DK-A6AW-01 19 21300858 21300858 G A ZNF714 Missense_Mutation p.R463Q 0.40 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 19 21365738 21365738 A G ZNF431 Missense_Mutation p.K211R 0.49 tolerated(0.08) benign(0.202) TCGA-DK-A6AW-01 19 21605738 21605738 G A ZNF493 Missense_Mutation p.D93N 0.49 tolerated(0.05) possibly_damaging(0.639) TCGA-DK-A6AW-01 19 21607321 21607321 G A ZNF493 Silent p.K620K 0.38 TCGA-DK-A6AW-01 19 21607830 21607830 G T ZNF493 3'UTR 0.44 TCGA-DK-A6AW-01 19 21719361 21719361 G A ZNF429 Missense_Mutation p.G169E 0.40 tolerated(0.16) benign(0.291) TCGA-DK-A6AW-01 19 21720523 21720523 G T ZNF429 Missense_Mutation p.K556N 0.47 deleterious(0.03) benign(0.123) TCGA-DK-A6AW-01 19 22364131 22364131 T C ZNF676 Missense_Mutation p.R130G 0.46 deleterious(0.03) benign(0.119) TCGA-DK-A6AW-01 19 22379677 22379677 G T ZNF676 5'UTR 0.36 TCGA-DK-A6AW-01 19 22941445 22941445 C A ZNF99 Missense_Mutation p.E422D 0.58 deleterious(0.01) benign(0.018) TCGA-DK-A6AW-01 19 22952780 22952780 G T ZNF99 Intron 0.51 TCGA-DK-A6AW-01 19 23159480 23159480 C A ZNF728 Missense_Mutation p.R220I 0.52 tolerated(0.35) benign(0) TCGA-DK-A6AW-01 19 23328678 23328678 C T ZNF730 Missense_Mutation p.H278Y 0.46 deleterious(0.01) benign(0.352) TCGA-DK-A6AW-01 19 23545473 23545473 G T ZNF91 Missense_Mutation p.S103Y 0.48 deleterious(0.01) possibly_damaging(0.809) TCGA-DK-A6AW-01 19 23835964 23835964 G T ZNF675 3'UTR 0.64 TCGA-DK-A6AW-01 19 23845930 23845930 C A ZNF675 Nonsense_Mutation p.E12* 0.38 TCGA-DK-A6AW-01 19 23926435 23926435 A G ZNF681 Silent p.N639N 0.55 TCGA-DK-A6AW-01 19 2476193 2476193 C G GADD45B 5'UTR 0.45 TCGA-DK-A6AW-01 19 2877370 2877370 G T ZNF556 Missense_Mutation p.K138N 0.46 tolerated(0.17) benign(0.317) TCGA-DK-A6AW-01 19 2933421 2933421 C T ZNF77 3'UTR 0.12 TCGA-DK-A6AW-01 19 2993567 2993567 G A TLE6 Silent p.K508K 0.49 TCGA-DK-A6AW-01 19 31040392 31040392 C T ZNF536 Missense_Mutation p.S1289F 0.47 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A6AW-01 19 31768328 31768328 C A TSHZ3 Missense_Mutation p.D791Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 19 31768705 31768705 C T TSHZ3 Missense_Mutation p.R665H 0.43 tolerated(0.09) benign(0.086) TCGA-DK-A6AW-01 19 32845667 32845667 G A ZNF507 Missense_Mutation p.R644H 0.42 deleterious(0) probably_damaging(0.964) TCGA-DK-A6AW-01 19 32845803 32845803 C T ZNF507 Silent p.I689I 0.51 TCGA-DK-A6AW-01 19 32902377 32902377 G T DPY19L3 Intron 0.33 TCGA-DK-A6AW-01 19 33444528 33444528 C A CEP89 Missense_Mutation p.R162I 0.08 deleterious(0) possibly_damaging(0.483) TCGA-DK-A6AW-01 19 33502627 33502627 C T RHPN2 Missense_Mutation p.R184Q 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 19 33616057 33616057 G T GPATCH1 Missense_Mutation p.K856N 0.25 deleterious_low_confidence(0.05) unknown(0) TCGA-DK-A6AW-01 19 3576607 3576607 C A HMG20B Missense_Mutation p.F192L 0.33 deleterious(0) benign(0.338) TCGA-DK-A6AW-01 19 36159269 36159269 A C UPK1A Intron 0.30 TCGA-DK-A6AW-01 19 36206035 36206035 G A ZBTB32 Silent p.S169S 0.41 TCGA-DK-A6AW-01 19 36210440 36210440 C T KMT2B Nonsense_Mutation p.R145* 0.25 TCGA-DK-A6AW-01 19 36321798 36321798 C A NPHS1 Missense_Mutation p.R1181I 0.40 deleterious(0.01) possibly_damaging(0.898) TCGA-DK-A6AW-01 19 36430971 36430971 G A LRFN3 Missense_Mutation p.R215H 0.47 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 19 36674410 36674410 G A ZNF565 Missense_Mutation p.S153F 0.48 tolerated(0.31) benign(0.133) TCGA-DK-A6AW-01 19 36674504 36674504 C T ZNF565 Missense_Mutation p.E122K 0.49 tolerated(1) benign(0) TCGA-DK-A6AW-01 19 36728264 36728264 A C ZNF146 3'UTR 0.29 TCGA-DK-A6AW-01 19 36831575 36831575 G A ZFP14 Missense_Mutation p.R385C 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A6AW-01 19 36884537 36884537 G T ZFP82 Missense_Mutation p.F235L 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 19 37117376 37117376 C A ZNF382 Missense_Mutation p.L193I 0.45 tolerated(0.41) benign(0.159) TCGA-DK-A6AW-01 19 37238856 37238856 C T ZNF850 Missense_Mutation p.R1029Q 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-DK-A6AW-01 19 37383166 37383166 C A ZNF829 Missense_Mutation p.R257I 0.41 tolerated(0.09) benign(0.042) TCGA-DK-A6AW-01 19 37441474 37441474 T G ZNF568 Silent p.P473P 0.43 TCGA-DK-A6AW-01 19 37619041 37619041 G T ZNF420 Missense_Mutation p.R383I 0.45 deleterious(0.04) possibly_damaging(0.671) TCGA-DK-A6AW-01 19 37678106 37678106 G A ZNF585B Silent p.I111I 0.43 TCGA-DK-A6AW-01 19 3781624 3781624 G A MATK Silent p.I242I 0.43 TCGA-DK-A6AW-01 19 37976156 37976156 C A ZNF570 3'UTR 0.59 TCGA-DK-A6AW-01 19 38103977 38103977 G T ZNF540 Missense_Mutation p.R599I 0.41 tolerated(0.05) benign(0.173) TCGA-DK-A6AW-01 19 38126256 38126256 C T ZFP30 Missense_Mutation p.E396K 0.41 tolerated(0.13) probably_damaging(0.998) TCGA-DK-A6AW-01 19 38126909 38126909 C A ZFP30 Missense_Mutation p.R178I 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 19 38160053 38160053 C A ZNF781 3'UTR 0.32 TCGA-DK-A6AW-01 19 38160892 38160892 C T ZNF781 Missense_Mutation p.R53Q 0.45 tolerated(0.08) possibly_damaging(0.86) TCGA-DK-A6AW-01 19 38901619 38901619 G T RASGRP4 Silent p.S624S 0.67 TCGA-DK-A6AW-01 19 38945914 38945914 A C RYR1 Missense_Mutation p.N494H 0.43 possibly_damaging(0.841) TCGA-DK-A6AW-01 19 39001196 39001196 C A RYR1 Missense_Mutation p.F2997L 0.43 benign(0.007) TCGA-DK-A6AW-01 19 39517563 39517563 A G FBXO27 Missense_Mutation p.F219L 0.47 deleterious(0.04) probably_damaging(0.997) TCGA-DK-A6AW-01 19 39819099 39819099 C A GMFG 3'UTR 0.58 TCGA-DK-A6AW-01 19 39963524 39963524 G A SUPT5H Missense_Mutation p.E704K 0.40 tolerated(0.45) benign(0.012) TCGA-DK-A6AW-01 19 40172147 40172147 C T AC093063.3 5'Flank 0.51 TCGA-DK-A6AW-01 19 40363251 40363251 A G FCGBP Missense_Mutation p.V4940A 0.41 possibly_damaging(0.634) TCGA-DK-A6AW-01 19 40376656 40376656 C T FCGBP Silent p.E3922E 0.14 TCGA-DK-A6AW-01 19 40376868 40376868 C T FCGBP Missense_Mutation p.E3852K 0.24 benign(0.305) TCGA-DK-A6AW-01 19 40740861 40740861 C T AKT2 Intron 0.50 TCGA-DK-A6AW-01 19 40899947 40899947 G A PRX Missense_Mutation p.P1438S 0.41 deleterious(0) possibly_damaging(0.803) TCGA-DK-A6AW-01 19 40901291 40901291 C T PRX Missense_Mutation p.D990N 0.47 deleterious(0) possibly_damaging(0.741) TCGA-DK-A6AW-01 19 41096959 41096959 G T SHKBP1 Missense_Mutation p.R657L 0.46 tolerated_low_confidence(0.11) benign(0.001) TCGA-DK-A6AW-01 19 41132887 41132887 C T LTBP4 Silent p.F1397F 0.58 TCGA-DK-A6AW-01 19 4117504 4117504 G A MAP2K2 Silent p.F72F 0.37 TCGA-DK-A6AW-01 19 41450299 41450299 G A AC092071.1 5'Flank 0.38 TCGA-DK-A6AW-01 19 41518700 41518700 C A CYP2B6 Missense_Mutation p.A425D 0.47 tolerated(0.05) probably_damaging(0.979) TCGA-DK-A6AW-01 19 41626322 41626322 C T CYP2F1 Silent p.F135F 0.37 TCGA-DK-A6AW-01 19 41850652 41850652 C A TGFB1 Missense_Mutation p.G212W 0.51 deleterious(0) possibly_damaging(0.774) TCGA-DK-A6AW-01 19 42222297 42222297 C A CEACAM5 Silent p.V496V 0.48 TCGA-DK-A6AW-01 19 42315381 42315381 C T CEACAM3 3'UTR 0.43 TCGA-DK-A6AW-01 19 42473707 42473707 G T ATP1A3 Missense_Mutation p.F869L 0.18 deleterious(0.03) possibly_damaging(0.638) TCGA-DK-A6AW-01 19 42490359 42490359 G A ATP1A3 Missense_Mutation p.A140V 0.50 tolerated(0.42) benign(0.212) TCGA-DK-A6AW-01 19 42566753 42566753 C T GRIK5 Missense_Mutation p.R132H 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A6AW-01 19 42873012 42873012 C T MEGF8 Missense_Mutation p.P2100S 0.45 tolerated(0.21) benign(0) TCGA-DK-A6AW-01 19 43026111 43026111 G A CEACAM1 Missense_Mutation p.A223V 0.50 tolerated(0.29) benign(0.011) TCGA-DK-A6AW-01 19 43097732 43097732 G T CEACAM8 Missense_Mutation p.L129I 0.46 tolerated(0.39) possibly_damaging(0.545) TCGA-DK-A6AW-01 19 43428855 43428855 T G PSG7 3'UTR 0.47 TCGA-DK-A6AW-01 19 43979547 43979547 A C PHLDB3 3'UTR 0.47 TCGA-DK-A6AW-01 19 44377742 44377742 A C ZNF404 Missense_Mutation p.I208M 0.43 deleterious(0.01) probably_damaging(0.918) TCGA-DK-A6AW-01 19 44377914 44377914 C T ZNF404 Missense_Mutation p.R151K 0.41 tolerated(0.35) benign(0.006) TCGA-DK-A6AW-01 19 44590183 44590183 C A ZNF284 Missense_Mutation p.F184L 0.42 deleterious(0.03) benign(0.388) TCGA-DK-A6AW-01 19 44662100 44662100 G A ZNF234 Missense_Mutation p.R644Q 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-DK-A6AW-01 19 44890645 44890645 C A ZNF285 Nonsense_Mutation p.E588* 0.34 TCGA-DK-A6AW-01 19 4550810 4550810 C A SEMA6B Splice_Site p.X374_splice 0.42 TCGA-DK-A6AW-01 19 4550944 4550944 T G SEMA6B Splice_Site p.X330_splice 0.42 TCGA-DK-A6AW-01 19 45810762 45810762 G A CKM Silent p.F308F 0.42 TCGA-DK-A6AW-01 19 45853638 45853638 G T KLC3 Nonsense_Mutation p.E395* 0.36 TCGA-DK-A6AW-01 19 46130079 46130079 A C EML2 Missense_Mutation p.L410V 0.45 tolerated(0.22) benign(0.053) TCGA-DK-A6AW-01 19 46388223 46388223 G A IRF2BP1 Silent p.F270F 0.92 TCGA-DK-A6AW-01 19 46443274 46443274 G A NOVA2 Silent p.I442I 0.42 TCGA-DK-A6AW-01 19 46890450 46890450 C T PPP5C Silent p.F335F 0.55 TCGA-DK-A6AW-01 19 46973747 46973747 G A PNMAL1 Silent p.F182F 0.39 TCGA-DK-A6AW-01 19 46998617 46998617 C T PNMAL2 Missense_Mutation p.E36K 0.44 deleterious(0.03) possibly_damaging(0.747) TCGA-DK-A6AW-01 19 4700264 4700264 C A DPP9 Missense_Mutation p.L346F 0.62 tolerated(0.17) probably_damaging(0.978) TCGA-DK-A6AW-01 19 47823118 47823118 A C C5AR1 Missense_Mutation p.K28N 0.42 tolerated(0.67) benign(0.001) TCGA-DK-A6AW-01 19 47823751 47823751 G T C5AR1 Missense_Mutation p.K239N 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 19 47823874 47823874 G T C5AR1 Missense_Mutation p.K280N 0.43 tolerated(0.46) benign(0.34) TCGA-DK-A6AW-01 19 47883016 47883016 G A DHX34 Missense_Mutation p.R919H 0.45 deleterious(0.01) probably_damaging(0.957) TCGA-DK-A6AW-01 19 47969455 47969455 G A SLC8A2 Missense_Mutation p.A69V 0.58 tolerated(1) benign(0.024) TCGA-DK-A6AW-01 19 4839238 4839238 C T PLIN3 Missense_Mutation p.G424E 0.42 tolerated(0.11) benign(0.265) TCGA-DK-A6AW-01 19 48525557 48525557 C T ELSPBP1 Silent p.D215D 0.37 TCGA-DK-A6AW-01 19 48556295 48556295 T G PLA2G4C Missense_Mutation p.E523D 0.46 tolerated(0.6) benign(0.03) TCGA-DK-A6AW-01 19 4891357 4891357 G A ARRDC5 Missense_Mutation p.R244W 0.41 tolerated(0.18) probably_damaging(0.98) TCGA-DK-A6AW-01 19 49228154 49228154 G A RASIP1 Missense_Mutation p.P731S 0.48 tolerated(0.22) possibly_damaging(0.715) TCGA-DK-A6AW-01 19 49551986 49551986 A C CGB8 Missense_Mutation p.F4C 0.41 deleterious(0.03) possibly_damaging(0.525) TCGA-DK-A6AW-01 19 49658054 49658054 C T HRC Silent p.E147E 0.49 TCGA-DK-A6AW-01 19 49813331 49813331 C A SLC6A16 Missense_Mutation p.E222D 0.51 tolerated(0.35) benign(0.103) TCGA-DK-A6AW-01 19 49862705 49862705 C T TEAD2 Missense_Mutation p.R95Q 0.46 deleterious(0.02) probably_damaging(0.979) TCGA-DK-A6AW-01 19 49897812 49897812 C T CCDC155 Silent p.F41F 0.43 TCGA-DK-A6AW-01 19 49901292 49901292 G A CCDC155 Missense_Mutation p.R174Q 0.46 tolerated(0.36) benign(0.024) TCGA-DK-A6AW-01 19 50098824 50098824 C T PRR12 Missense_Mutation p.S411L 0.44 possibly_damaging(0.519) TCGA-DK-A6AW-01 19 50248469 50248469 G A TSKS Silent p.L393L 0.65 TCGA-DK-A6AW-01 19 50548863 50548863 C T ZNF473 Missense_Mutation p.S388L 0.51 tolerated(0.3) benign(0.003) TCGA-DK-A6AW-01 19 50967707 50967707 G A MYBPC2 Silent p.S1111S 0.47 TCGA-DK-A6AW-01 19 50967746 50967746 C T MYBPC2 Silent p.N1124N 0.54 TCGA-DK-A6AW-01 19 51022508 51022508 G A LRRC4B Silent p.F154F 0.39 TCGA-DK-A6AW-01 19 51561864 51561864 G T KLK13 Silent p.V192V 0.47 TCGA-DK-A6AW-01 19 51631689 51631689 G A SIGLEC9 Silent p.K375K 0.38 TCGA-DK-A6AW-01 19 51738435 51738435 G T CD33 Missense_Mutation p.V257L 0.45 tolerated(0.37) benign(0.18) TCGA-DK-A6AW-01 19 51770668 51770668 C T SIGLECL1 Missense_Mutation p.A151V 0.40 tolerated(0.35) benign(0.011) TCGA-DK-A6AW-01 19 51832015 51832015 C T IGLON5 3'UTR 0.27 TCGA-DK-A6AW-01 19 52000606 52000606 A C SIGLEC12 Missense_Mutation p.V500G 0.35 deleterious(0) possibly_damaging(0.706) TCGA-DK-A6AW-01 19 52249918 52249918 G A FPR1 Silent p.F110F 0.45 TCGA-DK-A6AW-01 19 52394384 52394384 T C ZNF649 Missense_Mutation p.I335M 0.39 deleterious(0.01) benign(0.354) TCGA-DK-A6AW-01 19 5244386 5244386 C T PTPRS Missense_Mutation p.E366K 0.40 tolerated(0.09) possibly_damaging(0.746) TCGA-DK-A6AW-01 19 52498091 52498091 C A ZNF615 Splice_Site p.X91_splice 0.41 TCGA-DK-A6AW-01 19 52536914 52536914 C A ZNF432 3'UTR 0.46 TCGA-DK-A6AW-01 19 52537164 52537164 C A ZNF432 Missense_Mutation p.V590F 0.53 tolerated(0.2) possibly_damaging(0.548) TCGA-DK-A6AW-01 19 52537502 52537502 C T ZNF432 Missense_Mutation p.R477Q 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A6AW-01 19 52659971 52659971 C T ZNF836 Missense_Mutation p.R322K 0.51 tolerated(0.37) probably_damaging(0.967) TCGA-DK-A6AW-01 19 52869318 52869318 G T ZNF610 Missense_Mutation p.E229D 0.48 tolerated(0.17) benign(0.06) TCGA-DK-A6AW-01 19 52869757 52869757 G A ZNF610 Missense_Mutation p.E376K 0.38 tolerated(0.08) benign(0.196) TCGA-DK-A6AW-01 19 52869890 52869890 G T ZNF610 Missense_Mutation p.R420I 0.40 tolerated(0.1) benign(0.029) TCGA-DK-A6AW-01 19 52919780 52919780 C T ZNF528 Nonsense_Mutation p.R559* 0.34 TCGA-DK-A6AW-01 19 52937206 52937206 A G ZNF534 Splice_Site p.X6_splice 0.55 TCGA-DK-A6AW-01 19 52942308 52942308 G A ZNF534 Missense_Mutation p.R545H 0.44 tolerated(0.24) benign(0.292) TCGA-DK-A6AW-01 19 53085781 53085781 G A ZNF701 Missense_Mutation p.E223K 0.50 tolerated(0.24) possibly_damaging(0.805) TCGA-DK-A6AW-01 19 53208199 53208199 C A ZNF611 Missense_Mutation p.E703D 0.57 deleterious(0.04) benign(0.019) TCGA-DK-A6AW-01 19 53345135 53345135 C A ZNF468 Missense_Mutation p.D138Y 0.45 deleterious(0.02) probably_damaging(0.953) TCGA-DK-A6AW-01 19 53454542 53454542 C T ZNF816 Silent p.S162S 0.41 TCGA-DK-A6AW-01 19 53473696 53473696 G A ZNF702P RNA 0.41 TCGA-DK-A6AW-01 19 53571985 53571985 G A ZNF160 Missense_Mutation p.A601V 0.52 tolerated(0.48) probably_damaging(0.983) TCGA-DK-A6AW-01 19 53848871 53848871 A G ZNF845 Missense_Mutation p.N43S 0.41 deleterious(0) possibly_damaging(0.682) TCGA-DK-A6AW-01 19 53884368 53884368 G T ZNF525 Missense_Mutation p.R179I 0.42 tolerated(0.17) benign(0.022) TCGA-DK-A6AW-01 19 53889789 53889789 G A ZNF525 3'Flank 0.67 TCGA-DK-A6AW-01 19 53959188 53959188 G A ZNF761 RNA 0.44 TCGA-DK-A6AW-01 19 54189770 54189770 G T MIR519C RNA 0.44 TCGA-DK-A6AW-01 19 54197652 54197652 C T MIR526B RNA 0.30 TCGA-DK-A6AW-01 19 54197697 54197697 G T MIR526B RNA 0.58 TCGA-DK-A6AW-01 19 54209584 54209584 C A MIR526A1 RNA 0.45 TCGA-DK-A6AW-01 19 54234310 54234310 G T MIR518A1 RNA 0.47 TCGA-DK-A6AW-01 19 54304557 54304557 T C NLRP12 Missense_Mutation p.N894D 0.51 deleterious(0.04) probably_damaging(0.996) TCGA-DK-A6AW-01 19 54327552 54327552 C T NLRP12 5'UTR 0.50 TCGA-DK-A6AW-01 19 54662154 54662154 G A LENG1 Silent p.L60L 0.46 TCGA-DK-A6AW-01 19 54692119 54692119 G T MBOAT7 Missense_Mutation p.S53Y 0.48 deleterious(0) possibly_damaging(0.905) TCGA-DK-A6AW-01 19 54754514 54754514 C T LILRB5 3'UTR 0.62 TCGA-DK-A6AW-01 19 54803106 54803106 G A LILRA3 Missense_Mutation p.R191C 0.52 deleterious(0.03) benign(0.02) TCGA-DK-A6AW-01 19 54849819 54849819 G A LILRA4 Missense_Mutation p.S68L 0.49 tolerated(0.41) benign(0.003) TCGA-DK-A6AW-01 19 54850335 54850335 G T LILRA4 Missense_Mutation p.F10L 0.43 tolerated(0.07) benign(0) TCGA-DK-A6AW-01 19 55496503 55496503 A G NLRP2 Missense_Mutation p.N707D 0.46 tolerated(0.2) benign(0.001) TCGA-DK-A6AW-01 19 55525592 55525592 C T GP6 Missense_Mutation p.G574E 0.61 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DK-A6AW-01 19 55672758 55672758 C T DNAAF3 Missense_Mutation p.R299Q 0.11 tolerated(0.42) possibly_damaging(0.898) TCGA-DK-A6AW-01 19 55752687 55752687 G T PPP6R1 Missense_Mutation p.L361I 0.36 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 19 55816697 55816697 G A BRSK1 Missense_Mutation p.A576T 0.47 tolerated(0.07) benign(0.259) TCGA-DK-A6AW-01 19 56228108 56228108 G A NLRP9 Silent p.A772A 0.47 TCGA-DK-A6AW-01 19 56244335 56244335 G A NLRP9 Missense_Mutation p.R288W 0.45 deleterious(0) possibly_damaging(0.72) TCGA-DK-A6AW-01 19 56249491 56249491 G A NLRP9 Missense_Mutation p.L84F 0.45 deleterious(0) possibly_damaging(0.889) TCGA-DK-A6AW-01 19 56249644 56249644 G C NLRP9 Missense_Mutation p.P33A 0.45 tolerated(0.18) benign(0.003) TCGA-DK-A6AW-01 19 56369837 56369837 G T NLRP4 Missense_Mutation p.D360Y 0.49 deleterious(0) probably_damaging(0.968) TCGA-DK-A6AW-01 19 56467358 56467358 C T NLRP8 Missense_Mutation p.S645F 0.46 deleterious(0) probably_damaging(0.972) TCGA-DK-A6AW-01 19 56573042 56573042 T C NLRP5 3'UTR 0.59 TCGA-DK-A6AW-01 19 56693570 56693570 G T GALP Missense_Mutation p.D56Y 0.53 deleterious(0.01) probably_damaging(0.953) TCGA-DK-A6AW-01 19 56935607 56935607 A C ZNF583 Missense_Mutation p.K527T 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 19 57035865 57035865 G T ZNF471 Missense_Mutation p.K143N 0.47 tolerated(0.1) benign(0.003) TCGA-DK-A6AW-01 19 57089047 57089047 G A ZNF470 Missense_Mutation p.R417K 0.49 tolerated(0.17) probably_damaging(0.94) TCGA-DK-A6AW-01 19 5714240 5714240 G A LONP1 Missense_Mutation p.R158C 0.44 deleterious(0) possibly_damaging(0.766) TCGA-DK-A6AW-01 19 57175068 57175068 G A ZNF835 Missense_Mutation p.S500L 0.48 tolerated(0.05) benign(0.007) TCGA-DK-A6AW-01 19 57286773 57286773 C T ZIM2 Silent p.E289E 0.46 TCGA-DK-A6AW-01 19 57326344 57326344 C A PEG3 Missense_Mutation p.D1156Y 0.50 deleterious(0.02) possibly_damaging(0.594) TCGA-DK-A6AW-01 19 57641458 57641458 C A USP29 Missense_Mutation p.S472Y 0.05 tolerated(0.11) possibly_damaging(0.601) TCGA-DK-A6AW-01 19 57641855 57641855 A C USP29 Missense_Mutation p.Q604H 0.48 deleterious(0) benign(0.113) TCGA-DK-A6AW-01 19 57669725 57669725 C T DUXA Missense_Mutation p.E137K 0.40 deleterious(0.05) possibly_damaging(0.854) TCGA-DK-A6AW-01 19 57746697 57746697 G T AURKC Missense_Mutation p.R281I 0.55 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 19 58016129 58016129 G T ZNF773 Missense_Mutation p.E46D 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A6AW-01 19 58146045 58146045 T C ZNF211 Missense_Mutation p.W60R 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 19 58213957 58213957 G A ZNF154 Silent p.S120S 0.48 TCGA-DK-A6AW-01 19 58265468 58265468 G A ZNF776 Missense_Mutation p.E324K 0.43 tolerated(0.06) probably_damaging(0.967) TCGA-DK-A6AW-01 19 58452862 58452862 A G ZNF256 Silent p.H438H 0.37 TCGA-DK-A6AW-01 19 58453105 58453105 C T ZNF256 Silent p.G357G 0.40 TCGA-DK-A6AW-01 19 58489765 58489765 C A ZNF606 Missense_Mutation p.E761D 0.53 deleterious(0.02) benign(0.009) TCGA-DK-A6AW-01 19 58639978 58639978 C T ZNF329 Missense_Mutation p.R298Q 0.42 tolerated(1) probably_damaging(0.973) TCGA-DK-A6AW-01 19 58724271 58724271 G A ZNF274 Missense_Mutation p.R574H 0.41 deleterious(0.02) probably_damaging(0.95) TCGA-DK-A6AW-01 19 58773191 58773191 C T ZNF544 Missense_Mutation p.P407S 0.42 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 19 58864213 58864213 C T A1BG Intron 0.46 TCGA-DK-A6AW-01 19 58944982 58944982 C T ZNF132 Missense_Mutation p.R610Q 0.44 tolerated(0.65) possibly_damaging(0.488) TCGA-DK-A6AW-01 19 6479703 6479703 G A DENND1C Silent p.F51F 0.44 TCGA-DK-A6AW-01 19 6755165 6755165 C T SH2D3A Missense_Mutation p.E220K 0.46 tolerated(0.33) benign(0.032) TCGA-DK-A6AW-01 19 7625534 7625534 G A PNPLA6 Missense_Mutation p.D1244N 0.37 tolerated(0.08) benign(0.06) TCGA-DK-A6AW-01 19 7693137 7693137 G T XAB2 Missense_Mutation p.F33L 0.39 tolerated(0.29) benign(0.009) TCGA-DK-A6AW-01 19 8127161 8127161 G A CCL25 3'UTR 0.48 TCGA-DK-A6AW-01 19 8181656 8181656 C T FBN3 Missense_Mutation p.R1205H 0.49 tolerated(0.07) benign(0.051) TCGA-DK-A6AW-01 19 8616983 8616983 G T MYO1F Missense_Mutation p.F190L 0.39 deleterious(0.02) probably_damaging(0.967) TCGA-DK-A6AW-01 19 9045730 9045730 G T MUC16 Silent p.I11967I 0.34 TCGA-DK-A6AW-01 19 9046274 9046274 A C MUC16 Missense_Mutation p.F11786C 0.26 benign(0.027) TCGA-DK-A6AW-01 19 9048767 9048767 G T MUC16 Missense_Mutation p.S10955Y 0.28 possibly_damaging(0.702) TCGA-DK-A6AW-01 19 9050016 9050016 A G MUC16 Missense_Mutation p.S10539P 0.44 benign(0.145) TCGA-DK-A6AW-01 19 9057584 9057584 C A MUC16 Missense_Mutation p.M9954I 0.45 unknown(0) TCGA-DK-A6AW-01 19 9057874 9057874 T A MUC16 Missense_Mutation p.N9858Y 0.48 unknown(0) TCGA-DK-A6AW-01 19 9058480 9058480 C A MUC16 Nonsense_Mutation p.E9656* 0.49 TCGA-DK-A6AW-01 19 9061718 9061718 G T MUC16 Missense_Mutation p.F8576L 0.43 unknown(0) TCGA-DK-A6AW-01 19 9068834 9068834 G T MUC16 Silent p.L6204L 0.45 TCGA-DK-A6AW-01 19 9068961 9068961 G T MUC16 Missense_Mutation p.S6162Y 0.27 unknown(0) TCGA-DK-A6AW-01 19 9070754 9070754 G A MUC16 Silent p.T5564T 0.39 TCGA-DK-A6AW-01 19 9073373 9073373 C A MUC16 Missense_Mutation p.K4691N 0.49 unknown(0) TCGA-DK-A6AW-01 19 9076714 9076714 C A MUC16 Nonsense_Mutation p.E3578* 0.50 TCGA-DK-A6AW-01 19 9083745 9083745 C T MUC16 Silent p.E2690E 0.43 TCGA-DK-A6AW-01 19 9086857 9086857 C T MUC16 Missense_Mutation p.G1653E 0.47 unknown(0) TCGA-DK-A6AW-01 19 9213652 9213652 G A OR7G2 Missense_Mutation p.R111W 0.51 deleterious(0.01) possibly_damaging(0.592) TCGA-DK-A6AW-01 19 9406188 9406188 C T ZNF699 Missense_Mutation p.R631Q 0.45 tolerated(0.44) possibly_damaging(0.575) TCGA-DK-A6AW-01 19 9523994 9523994 C T ZNF266 Missense_Mutation p.R536Q 0.44 tolerated(0.69) benign(0.003) TCGA-DK-A6AW-01 19 9577428 9577428 C T ZNF560 Missense_Mutation p.R732Q 0.44 deleterious(0.04) benign(0.001) TCGA-DK-A6AW-01 19 9577653 9577653 T G ZNF560 Missense_Mutation p.K657T 0.49 tolerated(0.07) possibly_damaging(0.858) TCGA-DK-A6AW-01 1 10032143 10032143 C T NMNAT1 Silent p.S4S 0.44 TCGA-DK-A6AW-01 1 100342136 100342136 G A AGL Missense_Mutation p.R469Q 0.51 tolerated(0.09) benign(0.177) TCGA-DK-A6AW-01 1 100387184 100387184 C A AGL Missense_Mutation p.L1526I 0.57 deleterious(0.03) probably_damaging(0.951) TCGA-DK-A6AW-01 1 101200232 101200232 G A VCAM1 Missense_Mutation p.R656Q 0.49 tolerated(0.14) benign(0.025) TCGA-DK-A6AW-01 1 10161225 10161225 G A UBE4B Missense_Mutation p.R136Q 0.41 deleterious(0.02) benign(0.238) TCGA-DK-A6AW-01 1 10166291 10166291 C T UBE4B Silent p.F282F 0.43 TCGA-DK-A6AW-01 1 1022531 1022531 G A C1orf159 Missense_Mutation p.R100W 0.39 tolerated(0.2) benign(0.006) TCGA-DK-A6AW-01 1 102296256 102296256 C T OLFM3 Missense_Mutation p.R115Q 0.57 tolerated(0.44) benign(0.017) TCGA-DK-A6AW-01 1 10231309 10231309 G T UBE4B Missense_Mutation p.K1149N 0.42 deleterious(0) probably_damaging(0.985) TCGA-DK-A6AW-01 1 103343704 103343704 T G COL11A1 Missense_Mutation p.E1764D 0.40 unknown(0) TCGA-DK-A6AW-01 1 103491404 103491404 C A COL11A1 Intron 0.42 TCGA-DK-A6AW-01 1 103540281 103540281 A G COL11A1 Missense_Mutation p.C182R 0.48 probably_damaging(1) TCGA-DK-A6AW-01 1 104115861 104115861 G T AMY2B Missense_Mutation p.E164D 0.44 tolerated(0.3) benign(0.004) TCGA-DK-A6AW-01 1 10434480 10434480 G A KIF1B Missense_Mutation p.E1639K 0.44 tolerated(0.5) benign(0.236) TCGA-DK-A6AW-01 1 108918817 108918817 C T NBPF6 Intron 0.27 TCGA-DK-A6AW-01 1 109351525 109351525 T G STXBP3 3'UTR 0.43 TCGA-DK-A6AW-01 1 109617632 109617632 C A TAF13 Missense_Mutation p.R28I 0.40 deleterious(0) possibly_damaging(0.896) TCGA-DK-A6AW-01 1 109779132 109779132 C T SARS Nonsense_Mutation p.R407* 0.44 TCGA-DK-A6AW-01 1 109957867 109957867 G A PSMA5 Missense_Mutation p.A72V 0.52 tolerated(0.12) benign(0.045) TCGA-DK-A6AW-01 1 110032568 110032568 G A ATXN7L2 Missense_Mutation p.E352K 0.40 tolerated(0.21) possibly_damaging(0.581) TCGA-DK-A6AW-01 1 110171959 110171959 T G AMPD2 Missense_Mutation p.F624C 0.50 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 1 110581904 110581904 C T STRIP1 Nonsense_Mutation p.R146* 0.42 TCGA-DK-A6AW-01 1 110593638 110593638 C T STRIP1 Missense_Mutation p.R673W 0.50 deleterious(0) probably_damaging(0.96) TCGA-DK-A6AW-01 1 111216045 111216045 G T KCNA3 Missense_Mutation p.L463I 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-DK-A6AW-01 1 111770292 111770292 G A CHI3L2 5'UTR 0.40 TCGA-DK-A6AW-01 1 112305164 112305164 A C DDX20 Intron 0.42 TCGA-DK-A6AW-01 1 11249684 11249684 C T ANGPTL7 Silent p.I16I 0.58 TCGA-DK-A6AW-01 1 11333929 11333929 A C UBIAD1 Missense_Mutation p.K114T 0.44 tolerated(0.1) possibly_damaging(0.463) TCGA-DK-A6AW-01 1 113666804 113666804 G A LRIG2 3'UTR 0.45 TCGA-DK-A6AW-01 1 114248606 114248606 A T PHTF1 Missense_Mutation p.I526N 0.42 deleterious(0.01) benign(0.231) TCGA-DK-A6AW-01 1 114340401 114340401 T G RSBN1 Missense_Mutation p.N321H 0.46 tolerated_low_confidence(0.06) benign(0.041) TCGA-DK-A6AW-01 1 114380878 114380878 C T PTPN22 Missense_Mutation p.E382K 0.23 deleterious(0.04) probably_damaging(0.954) TCGA-DK-A6AW-01 1 114380989 114380989 T G PTPN22 Missense_Mutation p.K345Q 0.47 tolerated(0.3) benign(0.002) TCGA-DK-A6AW-01 1 114439175 114439175 G A AP4B1 Intron 0.38 TCGA-DK-A6AW-01 1 115220579 115220579 C T AMPD1 Silent p.L425L 0.50 TCGA-DK-A6AW-01 1 116937882 116937882 G A ATP1A1 Missense_Mutation p.G604D 0.44 tolerated(0.19) possibly_damaging(0.614) TCGA-DK-A6AW-01 1 116942124 116942124 T G ATP1A1 Missense_Mutation p.L844R 0.48 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 1 116946596 116946596 C T ATP1A1 Silent p.G1014G 0.39 TCGA-DK-A6AW-01 1 11779682 11779682 A G DRAXIN Missense_Mutation p.T327A 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A6AW-01 1 118477138 118477138 T C WDR3 Missense_Mutation p.C72R 0.48 tolerated(0.41) benign(0.015) TCGA-DK-A6AW-01 1 118584609 118584609 C A SPAG17 Missense_Mutation p.K957N 0.46 deleterious(0.01) possibly_damaging(0.736) TCGA-DK-A6AW-01 1 118628556 118628556 A C SPAG17 Missense_Mutation p.F584C 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 1 118628687 118628687 C A SPAG17 Missense_Mutation p.K540N 0.39 tolerated(0.09) probably_damaging(0.999) TCGA-DK-A6AW-01 1 119929330 119929330 G A HAO2 Missense_Mutation p.R216Q 0.38 tolerated(0.57) benign(0.004) TCGA-DK-A6AW-01 1 120438227 120438227 G A ADAM30 Missense_Mutation p.R245C 0.53 tolerated(0.07) probably_damaging(0.935) TCGA-DK-A6AW-01 1 12144597 12144597 G A TNFRSF8 Missense_Mutation p.R47H 0.51 deleterious(0.01) possibly_damaging(0.895) TCGA-DK-A6AW-01 1 12415988 12415988 G T VPS13D Nonsense_Mutation p.E3238* 0.47 TCGA-DK-A6AW-01 1 12837604 12837604 G C PRAMEF12 Missense_Mutation p.K438N 0.10 tolerated(0.2) benign(0.004) TCGA-DK-A6AW-01 1 13717122 13717122 C T PRAMEF17 Silent p.Y203Y 0.57 TCGA-DK-A6AW-01 1 13933784 13933784 T G PDPN Missense_Mutation p.S138A 0.37 tolerated(0.43) benign(0.001) TCGA-DK-A6AW-01 1 13942442 13942443 - A PDPN 3'UTR 0.30 TCGA-DK-A6AW-01 1 145509332 145509332 T C RBM8A 3'UTR 0.43 TCGA-DK-A6AW-01 1 145811431 145811431 C T GPR89A Missense_Mutation p.R109Q 0.36 tolerated(0.29) benign(0.004) TCGA-DK-A6AW-01 1 149755718 149755718 G T FCGR1A Missense_Mutation p.R71I 0.37 tolerated(0.2) benign(0.004) TCGA-DK-A6AW-01 1 149877291 149877291 G A SV2A Intron 0.38 TCGA-DK-A6AW-01 1 150064094 150064094 C T VPS45 Missense_Mutation p.L390F 0.47 deleterious(0) probably_damaging(0.927) TCGA-DK-A6AW-01 1 150463973 150463973 C T TARS2 Missense_Mutation p.R206C 0.56 deleterious(0.02) benign(0.006) TCGA-DK-A6AW-01 1 150483858 150483858 C T ECM1 Intron 0.50 TCGA-DK-A6AW-01 1 150778662 150778663 - T CTSK Frame_Shift_Ins p.N53Kfs*9 0.33 TCGA-DK-A6AW-01 1 150933439 150933439 C T SETDB1 Silent p.G967G 0.48 TCGA-DK-A6AW-01 1 150981120 150981120 C G PRUNE Nonsense_Mutation p.Y4* 0.13 TCGA-DK-A6AW-01 1 151138615 151138615 G A SCNM1 5'UTR 0.54 TCGA-DK-A6AW-01 1 151733936 151733936 G T MRPL9 Missense_Mutation p.F193L 0.45 deleterious(0.04) benign(0.103) TCGA-DK-A6AW-01 1 151751267 151751267 G A TDRKH Silent p.G259G 0.47 TCGA-DK-A6AW-01 1 152081565 152081565 G A TCHH Silent p.F1376F 0.39 TCGA-DK-A6AW-01 1 152282196 152282196 G A FLG Silent p.S1722S 0.51 TCGA-DK-A6AW-01 1 152732369 152732369 C A KPRP Missense_Mutation p.S102Y 0.46 deleterious(0) possibly_damaging(0.465) TCGA-DK-A6AW-01 1 152733799 152733799 T G KPRP Missense_Mutation p.F579V 0.55 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-DK-A6AW-01 1 152884061 152884061 C T IVL 3'UTR 0.39 TCGA-DK-A6AW-01 1 153122434 153122434 G A SPRR2G Silent p.C51C 0.47 TCGA-DK-A6AW-01 1 153303201 153303201 A G PGLYRP4 3'UTR 0.41 TCGA-DK-A6AW-01 1 153903077 153903077 C T DENND4B Missense_Mutation p.G1428E 0.42 deleterious(0) benign(0.356) TCGA-DK-A6AW-01 1 153914558 153914558 G A DENND4B Missense_Mutation p.A281V 0.50 deleterious(0.04) benign(0.119) TCGA-DK-A6AW-01 1 154042813 154042813 G A NUP210L Silent p.F830F 0.47 TCGA-DK-A6AW-01 1 154072516 154072516 G T NUP210L Nonsense_Mutation p.Y641* 0.47 TCGA-DK-A6AW-01 1 154218684 154218684 G A UBAP2L Missense_Mutation p.D283N 0.45 deleterious(0.03) unknown(0) TCGA-DK-A6AW-01 1 154229706 154229706 G A UBAP2L Silent p.S775S 0.44 TCGA-DK-A6AW-01 1 154680434 154680434 T C KCNN3 3'UTR 0.39 TCGA-DK-A6AW-01 1 154938249 154938249 C T SHC1 Missense_Mutation p.E466K 0.45 deleterious(0.01) possibly_damaging(0.63) TCGA-DK-A6AW-01 1 155058894 155058894 T G EFNA3 Missense_Mutation p.F198V 0.43 tolerated(0.05) benign(0.02) TCGA-DK-A6AW-01 1 155150509 155150509 C T TRIM46 Missense_Mutation p.S314L 0.39 tolerated(0.28) benign(0.121) TCGA-DK-A6AW-01 1 155289655 155289655 A C FDPS Missense_Mutation p.K332T 0.06 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 155717785 155717785 C T GON4L 3'Flank 0.47 TCGA-DK-A6AW-01 1 155744961 155744961 C A GON4L Nonsense_Mutation p.E728* 0.50 TCGA-DK-A6AW-01 1 155851155 155851155 C T SYT11 Silent p.F384F 0.45 TCGA-DK-A6AW-01 1 156268786 156268786 G A VHLL Silent p.I65I 0.49 TCGA-DK-A6AW-01 1 156281922 156281922 A G CCT3 Silent p.I355I 0.43 TCGA-DK-A6AW-01 1 156621325 156621325 G A BCAN Missense_Mutation p.V381I 0.42 tolerated(0.17) benign(0.026) TCGA-DK-A6AW-01 1 156639595 156639595 G T NES Missense_Mutation p.S1462Y 0.40 deleterious(0) possibly_damaging(0.641) TCGA-DK-A6AW-01 1 156707480 156707480 C T MRPL24 Missense_Mutation p.E158K 0.40 tolerated(0.9) benign(0.004) TCGA-DK-A6AW-01 1 156814378 156814378 C T INSRR Silent p.A871A 0.38 TCGA-DK-A6AW-01 1 156844719 156844719 G A NTRK1 Missense_Mutation p.A425T 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 1 157488270 157488270 T C FCRL5 Missense_Mutation p.N921D 0.47 tolerated(1) benign(0) TCGA-DK-A6AW-01 1 157556222 157556222 G T FCRL4 Missense_Mutation p.L291M 0.49 tolerated(0.39) benign(0.038) TCGA-DK-A6AW-01 1 157557209 157557209 A T FCRL4 Missense_Mutation p.V235D 0.08 deleterious(0) probably_damaging(0.959) TCGA-DK-A6AW-01 1 157803231 157803231 C T CD5L Missense_Mutation p.V264I 0.45 tolerated(0.19) benign(0.027) TCGA-DK-A6AW-01 1 158152835 158152835 G A CD1D Missense_Mutation p.E259K 0.50 tolerated(0.09) benign(0.025) TCGA-DK-A6AW-01 1 158261186 158261186 G A CD1C Silent p.S108S 0.44 TCGA-DK-A6AW-01 1 158436071 158436071 C A OR10K1 Silent p.T240T 0.47 TCGA-DK-A6AW-01 1 158450167 158450167 C T OR10R2 Missense_Mutation p.A167V 0.41 tolerated(0.12) benign(0.013) TCGA-DK-A6AW-01 1 158576912 158576912 C T OR10Z1 Silent p.I228I 0.39 TCGA-DK-A6AW-01 1 158736170 158736170 G T OR6N1 Silent p.I101I 0.40 TCGA-DK-A6AW-01 1 158906843 158906843 T G PYHIN1 Missense_Mutation p.I48S 0.33 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 1 15890790 15890790 C T DNAJC16 Nonsense_Mutation p.R512* 0.38 TCGA-DK-A6AW-01 1 158984705 158984705 G C IFI16 Missense_Mutation p.A79P 0.33 deleterious(0.02) probably_damaging(0.975) TCGA-DK-A6AW-01 1 159175890 159175890 T C DARC Silent p.L223L 0.52 TCGA-DK-A6AW-01 1 159785500 159785500 C T FCRL6 3'Flank 0.53 TCGA-DK-A6AW-01 1 159802909 159802909 C T SLAMF8 Missense_Mutation p.S204F 0.47 deleterious(0.04) probably_damaging(0.974) TCGA-DK-A6AW-01 1 159846422 159846422 C T CCDC19 Missense_Mutation p.E426K 0.50 deleterious(0.01) possibly_damaging(0.802) TCGA-DK-A6AW-01 1 15986581 15986581 C A RSC1A1 Missense_Mutation p.S73Y 0.47 deleterious(0) possibly_damaging(0.544) TCGA-DK-A6AW-01 1 160151776 160151776 C T ATP1A4 Missense_Mutation p.S975F 0.47 tolerated(0.06) probably_damaging(0.992) TCGA-DK-A6AW-01 1 160181434 160181434 G A PEA15 Missense_Mutation p.E34K 0.44 tolerated(0.28) benign(0.006) TCGA-DK-A6AW-01 1 160252265 160252265 A C PEX19 Missense_Mutation p.F125C 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 16056295 16056295 C A PLEKHM2 Missense_Mutation p.F693L 0.42 tolerated(0.12) benign(0.033) TCGA-DK-A6AW-01 1 160589632 160589632 C T SLAMF1 Silent p.T266T 0.46 TCGA-DK-A6AW-01 1 160648819 160648819 C T CD48 3'UTR 0.54 TCGA-DK-A6AW-01 1 160719772 160719772 C A SLAMF7 Missense_Mutation p.L180I 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A6AW-01 1 161042390 161042390 G T PVRL4 3'UTR 0.18 TCGA-DK-A6AW-01 1 161128267 161128267 G T UFC1 Missense_Mutation p.E163D 0.47 tolerated_low_confidence(0.53) benign(0.005) TCGA-DK-A6AW-01 1 161138854 161138854 C T PPOX Missense_Mutation p.R230C 0.46 deleterious(0) possibly_damaging(0.885) TCGA-DK-A6AW-01 1 161176243 161176243 C A NDUFS2 Missense_Mutation p.N83K 0.10 deleterious(0) probably_damaging(0.928) TCGA-DK-A6AW-01 1 161475242 161475242 T C FCGR2A 5'UTR 0.55 TCGA-DK-A6AW-01 1 161561058 161561058 G T FCGR2C 5'Flank 0.50 TCGA-DK-A6AW-01 1 161654769 161654769 T G RPL31P11 RNA 0.54 TCGA-DK-A6AW-01 1 161833097 161833097 C T ATF6 Nonsense_Mutation p.R572* 0.46 TCGA-DK-A6AW-01 1 16254645 16254645 G A SPEN Missense_Mutation p.R637Q 0.45 probably_damaging(0.99) TCGA-DK-A6AW-01 1 162824634 162824634 A C C1orf110 Missense_Mutation p.F277C 0.51 deleterious(0) probably_damaging(0.938) TCGA-DK-A6AW-01 1 163306563 163306563 T C NUF2 Silent p.F120F 0.40 TCGA-DK-A6AW-01 1 163315586 163315586 A C NUF2 Missense_Mutation p.K309T 0.46 tolerated(0.09) possibly_damaging(0.649) TCGA-DK-A6AW-01 1 16378241 16378241 C A CLCNKB Missense_Mutation p.S445Y 0.43 deleterious(0.01) possibly_damaging(0.553) TCGA-DK-A6AW-01 1 164816013 164816013 C T PBX1 3'UTR 0.48 TCGA-DK-A6AW-01 1 167059538 167059538 C A GPA33 5'UTR 0.56 TCGA-DK-A6AW-01 1 167741609 167741609 C A MPZL1 Nonsense_Mutation p.S119* 0.55 TCGA-DK-A6AW-01 1 167825607 167825607 A C ADCY10 Missense_Mutation p.F656C 0.50 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 1 167830251 167830251 G A ADCY10 Missense_Mutation p.T556I 0.41 deleterious(0) possibly_damaging(0.846) TCGA-DK-A6AW-01 1 167849796 167849796 C T ADCY10 Missense_Mutation p.E358K 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 1 167865905 167865906 - G ADCY10 Frame_Shift_Ins p.N223Qfs*3 0.30 TCGA-DK-A6AW-01 1 168250317 168250317 C T TBX19 5'UTR 0.45 TCGA-DK-A6AW-01 1 168282098 168282098 C T TBX19 Missense_Mutation p.S402L 0.47 deleterious_low_confidence(0.01) benign(0.062) TCGA-DK-A6AW-01 1 16893764 16893764 A C NBPF1 Missense_Mutation p.Y917D 0.03 tolerated(0.19) benign(0.008) TCGA-DK-A6AW-01 1 169096569 169096569 G T ATP1B1 Missense_Mutation p.D164Y 0.47 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 1 169446715 169446715 C T SLC19A2 Missense_Mutation p.R162Q 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 169483551 169483551 C A F5 Nonstop_Mutation p.*2225Yext*2 0.33 TCGA-DK-A6AW-01 1 169510846 169510846 C T F5 Missense_Mutation p.R1161Q 0.34 tolerated_low_confidence(0.58) benign(0.004) TCGA-DK-A6AW-01 1 169698688 169698688 G A SELE Missense_Mutation p.A281V 0.37 tolerated(0.12) benign(0.013) TCGA-DK-A6AW-01 1 169770023 169770023 G T C1orf112 Splice_Site 0.30 TCGA-DK-A6AW-01 1 169823675 169823675 G A SCYL3 Silent p.I635I 0.45 TCGA-DK-A6AW-01 1 169831822 169831822 G A SCYL3 Silent p.L358L 0.40 TCGA-DK-A6AW-01 1 17085323 17085323 G A MST1L RNA 0.12 TCGA-DK-A6AW-01 1 171303714 171303714 C T FMO4 Missense_Mutation p.T331I 0.42 tolerated(0.13) benign(0.056) TCGA-DK-A6AW-01 1 171605524 171605524 C T MYOC Silent p.E352E 0.49 TCGA-DK-A6AW-01 1 171956852 171956852 C T DNM3 Missense_Mutation p.R98C 0.45 deleterious(0.02) probably_damaging(1) TCGA-DK-A6AW-01 1 172376999 172376999 G A DNM3 3'UTR 0.42 TCGA-DK-A6AW-01 1 173010566 173010566 G T TNFSF18 Missense_Mutation p.L181I 0.46 tolerated(0.15) possibly_damaging(0.782) TCGA-DK-A6AW-01 1 173010649 173010649 G T TNFSF18 Missense_Mutation p.S153Y 0.45 tolerated(0.17) possibly_damaging(0.867) TCGA-DK-A6AW-01 1 173517539 173517539 C T SLC9C2 Missense_Mutation p.E484K 0.45 tolerated(0.11) benign(0.096) TCGA-DK-A6AW-01 1 173826751 173826767 AATACCCCAGATTCTGT - DARS2 Frame_Shift_Del p.N616Pfs*3 0.46 TCGA-DK-A6AW-01 1 173934023 173934023 T G RC3H1 Missense_Mutation p.K524Q 0.43 tolerated(0.05) probably_damaging(0.997) TCGA-DK-A6AW-01 1 173951947 173951947 C A RC3H1 Missense_Mutation p.R229I 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 1 175046751 175046751 G T TNN Missense_Mutation p.S66I 0.17 tolerated(0.09) benign(0.275) TCGA-DK-A6AW-01 1 175087766 175087766 C T TNN Missense_Mutation p.P819L 0.42 tolerated(0.09) benign(0.04) TCGA-DK-A6AW-01 1 175372298 175372298 G A TNR Silent p.Y318Y 0.45 TCGA-DK-A6AW-01 1 17674450 17674450 C T PADI4 Silent p.I354I 0.46 TCGA-DK-A6AW-01 1 176845710 176845710 C A ASTN1 Missense_Mutation p.K1142N 0.45 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 1 178426963 178426963 C T RASAL2 Missense_Mutation p.R846W 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 178834247 178834247 T G ANGPTL1 Missense_Mutation p.H222P 0.51 tolerated(0.45) benign(0.065) TCGA-DK-A6AW-01 1 179041130 179041130 G T FAM20B Missense_Mutation p.D361Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 1 179100501 179100501 G A ABL2 Silent p.F112F 0.42 TCGA-DK-A6AW-01 1 179460779 179460779 G T AXDND1 Missense_Mutation p.S733I 0.39 tolerated(0.15) benign(0.047) TCGA-DK-A6AW-01 1 179783133 179783133 T G FAM163A Missense_Mutation p.F105V 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 17981150 17981150 G T ARHGEF10L Missense_Mutation p.S805I 0.44 deleterious(0.01) benign(0.322) TCGA-DK-A6AW-01 1 179816690 179816690 T G TOR1AIP2 Missense_Mutation p.K212T 0.44 tolerated(0.07) benign(0.026) TCGA-DK-A6AW-01 1 180904810 180904810 C T KIAA1614 Missense_Mutation p.L589F 0.41 tolerated(0.06) benign(0.298) TCGA-DK-A6AW-01 1 182856269 182856269 C T DHX9 Silent p.S1171S 0.35 TCGA-DK-A6AW-01 1 183072544 183072544 G A LAMC1 Missense_Mutation p.R167Q 0.41 tolerated(0.22) benign(0.011) TCGA-DK-A6AW-01 1 183274001 183274001 G T NMNAT2 Intron 0.38 TCGA-DK-A6AW-01 1 183533167 183533167 T G NCF2 Splice_Site p.X334_splice 0.54 TCGA-DK-A6AW-01 1 183913434 183913434 C A COLGALT2 Missense_Mutation p.K431N 0.44 deleterious(0.03) possibly_damaging(0.477) TCGA-DK-A6AW-01 1 184567589 184567589 T G C1orf21 Missense_Mutation p.I107M 0.35 deleterious(0) probably_damaging(0.965) TCGA-DK-A6AW-01 1 184588806 184588806 C T C1orf21 3'UTR 0.50 TCGA-DK-A6AW-01 1 184588843 184588843 C T C1orf21 3'UTR 0.50 TCGA-DK-A6AW-01 1 184675862 184675862 G A EDEM3 Silent p.I706I 0.48 TCGA-DK-A6AW-01 1 184863275 184863275 C A FAM129A Missense_Mutation p.K84N 0.52 deleterious(0) possibly_damaging(0.653) TCGA-DK-A6AW-01 1 185089291 185089291 G T TRMT1L Missense_Mutation p.L688I 0.47 tolerated(0.08) probably_damaging(0.988) TCGA-DK-A6AW-01 1 185175883 185175883 A G SWT1 Missense_Mutation p.N654D 0.47 deleterious(0.02) possibly_damaging(0.637) TCGA-DK-A6AW-01 1 186023071 186023071 C T HMCN1 Missense_Mutation p.S2272L 0.48 possibly_damaging(0.856) TCGA-DK-A6AW-01 1 186121939 186121939 T A HMCN1 Missense_Mutation p.L4985Q 0.40 probably_damaging(0.996) TCGA-DK-A6AW-01 1 186314810 186314810 T C TPR Missense_Mutation p.T1039A 0.38 possibly_damaging(0.523) TCGA-DK-A6AW-01 1 19183884 19183884 C T TAS1R2 Missense_Mutation p.D142N 0.40 deleterious(0.01) possibly_damaging(0.805) TCGA-DK-A6AW-01 1 192321194 192321194 C T RGS21 Nonsense_Mutation p.R36* 0.45 TCGA-DK-A6AW-01 1 193150663 193150663 G A B3GALT2 Silent p.C10C 0.44 TCGA-DK-A6AW-01 1 196274417 196274417 T C KCNT2 Missense_Mutation p.M848V 0.67 tolerated(0.09) benign(0.044) TCGA-DK-A6AW-01 1 196642117 196642117 A C CFH Missense_Mutation p.E23A 0.30 tolerated(0.17) benign(0.158) TCGA-DK-A6AW-01 1 196716496 196716496 C A CFH 3'UTR 0.38 TCGA-DK-A6AW-01 1 196871683 196871683 G A CFHR4 Missense_Mutation p.G64E 0.39 tolerated(0.88) probably_damaging(0.995) TCGA-DK-A6AW-01 1 196887555 196887555 A C CFHR4 3'UTR 0.48 TCGA-DK-A6AW-01 1 196977743 196977743 C T CFHR5 Missense_Mutation p.A547V 0.38 tolerated(0.1) possibly_damaging(0.464) TCGA-DK-A6AW-01 1 197057557 197057557 C A ASPM Missense_Mutation p.E3330D 0.46 deleterious(0) possibly_damaging(0.488) TCGA-DK-A6AW-01 1 197060162 197060162 G A ASPM Nonsense_Mutation p.R3152* 0.22 TCGA-DK-A6AW-01 1 197069681 197069681 T C ASPM Silent p.K2900K 0.47 TCGA-DK-A6AW-01 1 197069745 197069745 A C ASPM Missense_Mutation p.F2879C 0.41 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AW-01 1 197073369 197073369 G T ASPM Missense_Mutation p.S1671Y 0.43 tolerated(0.08) benign(0.403) TCGA-DK-A6AW-01 1 197313591 197313591 T C CRB1 Missense_Mutation p.V278A 0.43 tolerated(0.23) benign(0.196) TCGA-DK-A6AW-01 1 197396791 197396791 C T CRB1 Missense_Mutation p.S779F 0.42 tolerated(0.35) possibly_damaging(0.877) TCGA-DK-A6AW-01 1 197407878 197407878 C A CRB1 Intron 0.50 TCGA-DK-A6AW-01 1 198248123 198248123 T C NEK7 Missense_Mutation p.V174A 0.35 tolerated(0.27) benign(0.033) TCGA-DK-A6AW-01 1 198721736 198721736 G A PTPRC Missense_Mutation p.R1115Q 0.42 tolerated(0.42) possibly_damaging(0.73) TCGA-DK-A6AW-01 1 200528497 200528497 T G KIF14 Missense_Mutation p.E1438D 0.42 tolerated(0.26) benign(0.005) TCGA-DK-A6AW-01 1 200817844 200817844 T G CAMSAP2 Missense_Mutation p.D649E 0.44 tolerated(0.15) benign(0.019) TCGA-DK-A6AW-01 1 200956033 200956033 G A KIF21B Nonsense_Mutation p.R1210* 0.41 TCGA-DK-A6AW-01 1 200959350 200959350 G A KIF21B Silent p.I982I 0.44 TCGA-DK-A6AW-01 1 201027539 201027539 G A CACNA1S Silent p.I1202I 0.35 TCGA-DK-A6AW-01 1 201289438 201289438 T G PKP1 Missense_Mutation p.Y447D 0.37 tolerated(0.13) probably_damaging(0.972) TCGA-DK-A6AW-01 1 201938725 201938725 C T TIMM17A 3'UTR 0.57 TCGA-DK-A6AW-01 1 202288346 202288346 C T LGR6 3'UTR 0.47 TCGA-DK-A6AW-01 1 202722143 202722143 C A KDM5B Nonsense_Mutation p.E531* 0.44 TCGA-DK-A6AW-01 1 204159861 204159861 C T KISS1 Silent p.R56R 0.54 TCGA-DK-A6AW-01 1 204949561 204949561 C T NFASC Missense_Mutation p.T747M 0.48 deleterious(0.04) probably_damaging(0.987) TCGA-DK-A6AW-01 1 205030531 205030531 G A CNTN2 Missense_Mutation p.G319D 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 205031669 205031669 C A CNTN2 Silent p.I404I 0.47 TCGA-DK-A6AW-01 1 205117426 205117426 G T DSTYK Missense_Mutation p.L837I 0.48 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A6AW-01 1 205632113 205632113 C T SLC45A3 Missense_Mutation p.R269H 0.59 tolerated(0.53) benign(0.041) TCGA-DK-A6AW-01 1 205739392 205739392 A C RAB7L1 3'UTR 0.45 TCGA-DK-A6AW-01 1 205897036 205897036 C T SLC26A9 Silent p.S365S 0.34 TCGA-DK-A6AW-01 1 206225010 206225010 C T AVPR1B Silent p.F190F 0.46 TCGA-DK-A6AW-01 1 207078237 207078237 C T FAIM3 3'UTR 0.45 TCGA-DK-A6AW-01 1 207307917 207307917 G A C4BPA Missense_Mutation p.R418Q 0.41 tolerated(0.28) benign(0.06) TCGA-DK-A6AW-01 1 207640138 207640138 G T CR2 Missense_Mutation p.R109I 0.44 tolerated(0.16) benign(0.005) TCGA-DK-A6AW-01 1 207649651 207649651 C A CR2 Missense_Mutation p.S930Y 0.40 tolerated(0.59) possibly_damaging(0.673) TCGA-DK-A6AW-01 1 207789924 207789924 C A CR1 Silent p.I2222I 0.39 TCGA-DK-A6AW-01 1 208269384 208269384 C G PLXNA2 Missense_Mutation p.A658P 0.43 deleterious(0.01) possibly_damaging(0.468) TCGA-DK-A6AW-01 1 208315684 208315684 G A PLXNA2 Missense_Mutation p.S499F 0.51 deleterious(0) benign(0.344) TCGA-DK-A6AW-01 1 208390502 208390502 G T PLXNA2 Missense_Mutation p.L256I 0.45 tolerated(0.06) probably_damaging(0.974) TCGA-DK-A6AW-01 1 210014341 210014341 G A DIEXF Missense_Mutation p.E476K 0.48 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 1 210017023 210017023 G A DIEXF Missense_Mutation p.R670H 0.48 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 210194442 210194442 G A SYT14 Silent p.A140A 0.49 TCGA-DK-A6AW-01 1 21050924 21050924 G A SH2D5 Missense_Mutation p.R199W 0.46 deleterious(0) possibly_damaging(0.768) TCGA-DK-A6AW-01 1 211546116 211546116 T C TRAF5 3'UTR 0.50 TCGA-DK-A6AW-01 1 211840511 211840511 T G NEK2 Missense_Mutation p.N350H 0.41 deleterious(0.01) benign(0.111) TCGA-DK-A6AW-01 1 212799739 212799739 A C FAM71A Missense_Mutation p.K507T 0.43 deleterious(0) possibly_damaging(0.688) TCGA-DK-A6AW-01 1 213302969 213302969 G T RPS6KC1 Missense_Mutation p.R191I 0.42 deleterious(0.01) possibly_damaging(0.646) TCGA-DK-A6AW-01 1 214170503 214170503 C T PROX1 Missense_Mutation p.R209C 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 214814332 214814332 G A CENPF Missense_Mutation p.R884H 0.23 benign(0.014) TCGA-DK-A6AW-01 1 214816373 214816373 G A CENPF Silent p.E1564E 0.50 TCGA-DK-A6AW-01 1 214819293 214819293 G A CENPF Missense_Mutation p.R2127H 0.40 probably_damaging(0.998) TCGA-DK-A6AW-01 1 215955512 215955512 G A USH2A Nonsense_Mutation p.R3538* 0.51 TCGA-DK-A6AW-01 1 21605859 21605859 C T ECE1 Intron 0.44 TCGA-DK-A6AW-01 1 216062092 216062092 G T USH2A Missense_Mutation p.F2633L 0.39 benign(0.02) TCGA-DK-A6AW-01 1 216138811 216138811 C T USH2A Missense_Mutation p.R2323Q 0.34 probably_damaging(0.942) TCGA-DK-A6AW-01 1 216692578 216692578 G A ESRRG Silent p.L362L 0.45 TCGA-DK-A6AW-01 1 21804583 21804583 T C NBPF3 Intron 0.38 TCGA-DK-A6AW-01 1 21937963 21937963 C T RAP1GAP Silent p.T339T 0.63 TCGA-DK-A6AW-01 1 220170573 220170573 G A EPRS Missense_Mutation p.R765C 0.43 deleterious(0.01) possibly_damaging(0.545) TCGA-DK-A6AW-01 1 220379281 220379281 G A RAB3GAP2 Missense_Mutation p.S227F 0.59 deleterious(0) probably_damaging(0.976) TCGA-DK-A6AW-01 1 220792055 220792055 G T MARK1 Missense_Mutation p.K289N 0.39 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 222716939 222716939 C T HHIPL2 Missense_Mutation p.R305Q 0.47 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 1 222805524 222805524 G T MIA3 Nonsense_Mutation p.E1063* 0.39 TCGA-DK-A6AW-01 1 222919977 222919977 C T FAM177B Silent p.D30D 0.54 TCGA-DK-A6AW-01 1 22307567 22307567 C T CELA3B Silent p.Y88Y 0.43 TCGA-DK-A6AW-01 1 223568536 223568536 G A C1orf65 Silent p.Q573Q 0.39 TCGA-DK-A6AW-01 1 225599097 225599097 C T LBR Missense_Mutation p.R377Q 0.33 deleterious(0.02) probably_damaging(1) TCGA-DK-A6AW-01 1 226349248 226349248 G A ACBD3 Missense_Mutation p.R238W 0.43 deleterious(0) possibly_damaging(0.689) TCGA-DK-A6AW-01 1 227288848 227288848 G T CDC42BPA Silent p.I698I 0.51 TCGA-DK-A6AW-01 1 227618480 227618480 A G CTD-2090I13.1 RNA 0.39 TCGA-DK-A6AW-01 1 227842385 227842385 G T ZNF678 Missense_Mutation p.R145I 0.36 tolerated(0.16) benign(0.006) TCGA-DK-A6AW-01 1 228113047 228113047 G A WNT9A Missense_Mutation p.A90V 0.39 tolerated(1) possibly_damaging(0.53) TCGA-DK-A6AW-01 1 22828002 22828002 C T ZBTB40 Silent p.F283F 0.58 TCGA-DK-A6AW-01 1 228588854 228588854 G A TRIM11 Silent p.F182F 0.47 TCGA-DK-A6AW-01 1 228879565 228879565 T C RHOU 3'UTR 0.25 TCGA-DK-A6AW-01 1 22927466 22927466 C T EPHA8 Missense_Mutation p.L872F 0.40 deleterious(0) probably_damaging(0.912) TCGA-DK-A6AW-01 1 22927528 22927528 C T EPHA8 Silent p.L892L 0.39 TCGA-DK-A6AW-01 1 229611390 229611390 G T NUP133 Missense_Mutation p.H616N 0.41 tolerated(0.12) benign(0.058) TCGA-DK-A6AW-01 1 229770844 229770844 G A URB2 Missense_Mutation p.E162K 0.35 tolerated(0.08) benign(0.129) TCGA-DK-A6AW-01 1 230401059 230401059 C A GALNT2 Missense_Mutation p.H462Q 0.47 tolerated(0.64) benign(0.359) TCGA-DK-A6AW-01 1 230498080 230498080 C T PGBD5 Intron 0.33 TCGA-DK-A6AW-01 1 230916261 230916261 G A CAPN9 Missense_Mutation p.E430K 0.42 tolerated(0.9) benign(0.228) TCGA-DK-A6AW-01 1 231396380 231396380 T G GNPAT Missense_Mutation p.F130C 0.48 deleterious(0) probably_damaging(0.977) TCGA-DK-A6AW-01 1 231487325 231487325 C T SPRTN Intron 0.44 TCGA-DK-A6AW-01 1 232574902 232574902 G A SIPA1L2 Missense_Mutation p.A1328V 0.40 tolerated(0.6) benign(0.001) TCGA-DK-A6AW-01 1 232629350 232629350 G A SIPA1L2 Missense_Mutation p.R514W 0.43 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 1 232940900 232940900 A C MAP10 Missense_Mutation p.K44T 0.44 possibly_damaging(0.607) TCGA-DK-A6AW-01 1 232941170 232941170 C T MAP10 Missense_Mutation p.A134V 0.41 tolerated_low_confidence(0.19) benign(0) TCGA-DK-A6AW-01 1 232943902 232943902 T C MAP10 Missense_Mutation p.Y1045H 0.48 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 2332347 2332347 T C RER1 Missense_Mutation p.I113T 0.06 deleterious(0) probably_damaging(0.925) TCGA-DK-A6AW-01 1 233395072 233395072 T C PCNXL2 Missense_Mutation p.D179G 0.35 deleterious_low_confidence(0.03) benign(0.419) TCGA-DK-A6AW-01 1 233807105 233807105 C A KCNK1 Missense_Mutation p.F280L 0.50 tolerated(0.21) probably_damaging(0.997) TCGA-DK-A6AW-01 1 23420484 23420484 G A LUZP1 Silent p.L91L 0.43 TCGA-DK-A6AW-01 1 234527271 234527272 - T TARBP1 3'UTR 0.69 TCGA-DK-A6AW-01 1 234742775 234742775 G T IRF2BP2 3'UTR 0.35 TCGA-DK-A6AW-01 1 235967904 235967904 A G LYST Missense_Mutation p.I1152T 0.39 tolerated(0.24) benign(0.002) TCGA-DK-A6AW-01 1 236148799 236148799 C A NID1 Missense_Mutation p.V979F 0.58 deleterious(0) possibly_damaging(0.731) TCGA-DK-A6AW-01 1 236393548 236393548 C A ERO1LB Nonsense_Mutation p.E230* 0.47 TCGA-DK-A6AW-01 1 23688367 23688367 G T ZNF436 3'UTR 0.42 TCGA-DK-A6AW-01 1 237538066 237538066 T G RYR2 Missense_Mutation p.F145C 0.63 probably_damaging(0.935) TCGA-DK-A6AW-01 1 237617809 237617809 G T RYR2 Nonsense_Mutation p.E471* 0.61 TCGA-DK-A6AW-01 1 237732469 237732469 G T RYR2 Nonsense_Mutation p.E1150* 0.38 TCGA-DK-A6AW-01 1 237774085 237774085 A G RYR2 Silent p.G1569G 0.31 TCGA-DK-A6AW-01 1 237787115 237787115 A T RYR2 Silent p.P1989P 0.59 TCGA-DK-A6AW-01 1 237880546 237880546 C A RYR2 Silent p.R3458R 0.61 TCGA-DK-A6AW-01 1 237982452 237982452 C A RYR2 Missense_Mutation p.F4850L 0.55 possibly_damaging(0.787) TCGA-DK-A6AW-01 1 23885911 23885911 C T ID3 Missense_Mutation p.A3T 0.49 deleterious(0) probably_damaging(0.984) TCGA-DK-A6AW-01 1 240374493 240374493 G A FMN2 Silent p.K1341K 0.35 TCGA-DK-A6AW-01 1 241675335 241675335 C A FH Nonsense_Mutation p.E163* 0.43 TCGA-DK-A6AW-01 1 241951227 241951227 G T WDR64 Missense_Mutation p.D918Y 0.36 deleterious(0.01) probably_damaging(1) TCGA-DK-A6AW-01 1 243663051 243663051 T G AKT3 3'Flank 0.44 TCGA-DK-A6AW-01 1 243663058 243663058 T G SDCCAG8 Missense_Mutation p.L705V 0.43 tolerated(0.33) benign(0.019) TCGA-DK-A6AW-01 1 244715887 244715887 A G C1orf101 Missense_Mutation p.K267R 0.49 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 1 244736009 244736009 A C C1orf101 Missense_Mutation p.K629Q 0.41 tolerated(0.22) benign(0.067) TCGA-DK-A6AW-01 1 2452342 2452342 G A PANK4 Silent p.V142V 0.44 TCGA-DK-A6AW-01 1 245771030 245771030 C T KIF26B Silent p.F545F 0.38 TCGA-DK-A6AW-01 1 245850473 245850473 C T KIF26B Silent p.C1396C 0.41 TCGA-DK-A6AW-01 1 247054351 247054351 A C AHCTF1 Missense_Mutation p.L662V 0.46 tolerated(0.06) possibly_damaging(0.882) TCGA-DK-A6AW-01 1 247655343 247655343 C A OR2W5 RNA 0.52 TCGA-DK-A6AW-01 1 247835554 247835554 T C OR13G1 Missense_Mutation p.T264A 0.43 tolerated(0.07) benign(0.126) TCGA-DK-A6AW-01 1 247835819 247835819 G A OR13G1 Silent p.F175F 0.47 TCGA-DK-A6AW-01 1 247875527 247875527 G T OR6F1 Missense_Mutation p.F177L 0.43 deleterious(0) probably_damaging(0.974) TCGA-DK-A6AW-01 1 247978784 247978784 G T OR14A16 Missense_Mutation p.S83Y 0.42 deleterious(0.01) benign(0.18) TCGA-DK-A6AW-01 1 248128636 248128636 G T OR2AK2 Translation_Start_Site p.M1? 0.45 tolerated_low_confidence(0.07) benign(0.107) TCGA-DK-A6AW-01 1 248201964 248201964 C T OR2L2 Missense_Mutation p.P132L 0.38 deleterious(0.02) benign(0.012) TCGA-DK-A6AW-01 1 248308537 248308537 C A OR2M5 Missense_Mutation p.L30M 0.41 tolerated(0.25) possibly_damaging(0.696) TCGA-DK-A6AW-01 1 248308771 248308771 C A OR2M5 Missense_Mutation p.L108I 0.44 tolerated(0.43) benign(0.018) TCGA-DK-A6AW-01 1 248487540 248487540 C T OR2M7 Missense_Mutation p.E111K 0.45 deleterious(0) benign(0.171) TCGA-DK-A6AW-01 1 248512532 248512532 C A OR14C36 Silent p.V152V 0.47 TCGA-DK-A6AW-01 1 248512840 248512840 C T OR14C36 Missense_Mutation p.S255F 0.49 tolerated(1) benign(0.006) TCGA-DK-A6AW-01 1 248813527 248813527 C A OR2T27 Missense_Mutation p.R220I 0.62 tolerated(0.39) possibly_damaging(0.629) TCGA-DK-A6AW-01 1 25570093 25570093 C T C1orf63 Missense_Mutation p.R235Q 0.45 deleterious(0.01) benign(0.293) TCGA-DK-A6AW-01 1 25697006 25697006 C A RHCE Missense_Mutation p.W393C 0.47 tolerated(0.09) benign(0.147) TCGA-DK-A6AW-01 1 25718533 25718533 C T RHCE Missense_Mutation p.E196K 0.36 tolerated(0.61) benign(0.012) TCGA-DK-A6AW-01 1 25747246 25747246 C T RHCE Missense_Mutation p.R11H 0.72 tolerated(0.54) possibly_damaging(0.466) TCGA-DK-A6AW-01 1 26586194 26586194 G T CEP85 Missense_Mutation p.K414N 0.42 deleterious(0.01) possibly_damaging(0.76) TCGA-DK-A6AW-01 1 27092842 27092842 G A ARID1A Missense_Mutation p.A955T 0.45 unknown(0) TCGA-DK-A6AW-01 1 27106354 27106354 C T ARID1A Nonsense_Mutation p.R1989* 0.95 TCGA-DK-A6AW-01 1 27120690 27120690 C T PIGV Silent p.L55L 0.44 TCGA-DK-A6AW-01 1 27217667 27217667 C A GPATCH3 Missense_Mutation p.R471I 0.57 tolerated(0.18) benign(0.017) TCGA-DK-A6AW-01 1 27278385 27278385 C T C1orf172 Missense_Mutation p.D163N 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 27699748 27699748 C A FCN3 Missense_Mutation p.R91I 0.43 deleterious(0) benign(0.399) TCGA-DK-A6AW-01 1 28605706 28605706 G A SESN2 Missense_Mutation p.R437Q 0.38 tolerated(0.12) benign(0.007) TCGA-DK-A6AW-01 1 2938902 2938902 A C ACTRT2 Missense_Mutation p.K218Q 0.41 deleterious(0.03) benign(0.102) TCGA-DK-A6AW-01 1 31230535 31230535 C T LAPTM5 Missense_Mutation p.A20T 0.52 deleterious(0.01) possibly_damaging(0.621) TCGA-DK-A6AW-01 1 32566248 32566248 G T TMEM39B Intron 0.41 TCGA-DK-A6AW-01 1 32800393 32800393 G A MARCKSL1 Silent p.I131I 0.47 TCGA-DK-A6AW-01 1 33415361 33415361 G A RNF19B Missense_Mutation p.A217V 0.42 deleterious(0.05) probably_damaging(0.996) TCGA-DK-A6AW-01 1 33613111 33613111 G A TRIM62 Silent p.I365I 0.47 TCGA-DK-A6AW-01 1 33960964 33960964 G T ZSCAN20 Missense_Mutation p.R1007I 0.39 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 34042990 34042990 G A CSMD2 Silent p.N2496N 0.43 TCGA-DK-A6AW-01 1 35370195 35370195 C T DLGAP3 Missense_Mutation p.D264N 0.37 deleterious(0) probably_damaging(0.978) TCGA-DK-A6AW-01 1 35453255 35453255 T G ZMYM6 Missense_Mutation p.K1143T 0.64 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 35579297 35579297 C T ZMYM1 Silent p.I622I 0.37 TCGA-DK-A6AW-01 1 36101916 36101916 C T PSMB2 Missense_Mutation p.R70Q 0.27 deleterious(0) benign(0.379) TCGA-DK-A6AW-01 1 36215406 36215406 C A CLSPN Nonsense_Mutation p.E679* 0.59 TCGA-DK-A6AW-01 1 36564104 36564104 C T COL8A2 Missense_Mutation p.R393Q 0.62 deleterious(0.03) unknown(0) TCGA-DK-A6AW-01 1 3662769 3662769 C A TP73-AS1 RNA 0.40 TCGA-DK-A6AW-01 1 3680291 3680291 A G CCDC27 Missense_Mutation p.Q448R 0.42 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 1 37356632 37356632 G A GRIK3 Nonsense_Mutation p.R61* 0.44 TCGA-DK-A6AW-01 1 38226940 38226940 C A EPHA10 Intron 0.49 TCGA-DK-A6AW-01 1 38230708 38230708 G A EPHA10 Missense_Mutation p.R11C 0.50 tolerated(0.07) probably_damaging(0.996) TCGA-DK-A6AW-01 1 38265393 38265393 G A MANEAL Missense_Mutation p.D298N 0.43 tolerated(0.06) benign(0.199) TCGA-DK-A6AW-01 1 38345829 38345829 C T INPP5B Missense_Mutation p.G490D 0.39 tolerated(0.43) benign(0.299) TCGA-DK-A6AW-01 1 38423816 38423816 G A SF3A3 3'UTR 0.43 TCGA-DK-A6AW-01 1 39763353 39763353 G A MACF1 Missense_Mutation p.R811Q 0.44 possibly_damaging(0.533) TCGA-DK-A6AW-01 1 39799722 39799722 C A MACF1 Intron 0.54 TCGA-DK-A6AW-01 1 39806546 39806546 A C MACF1 Intron 0.50 TCGA-DK-A6AW-01 1 39880266 39880266 G A KIAA0754 3'UTR 0.52 TCGA-DK-A6AW-01 1 39893795 39893795 C T MACF1 Missense_Mutation p.R3485W 0.37 probably_damaging(1) TCGA-DK-A6AW-01 1 39920712 39920712 T G MACF1 Missense_Mutation p.D4947E 0.37 probably_damaging(0.999) TCGA-DK-A6AW-01 1 39951607 39951607 C A MACF1 3'UTR 0.33 TCGA-DK-A6AW-01 1 40309832 40309832 C A TRIT1 Missense_Mutation p.R392I 0.48 deleterious(0.01) possibly_damaging(0.851) TCGA-DK-A6AW-01 1 40705776 40705776 C A RLF Missense_Mutation p.S1801Y 0.46 deleterious(0.04) benign(0.341) TCGA-DK-A6AW-01 1 40706184 40706184 G A RLF 3'UTR 0.57 TCGA-DK-A6AW-01 1 40726608 40726608 A T ZMPSTE24 Missense_Mutation p.K74I 0.34 deleterious(0) probably_damaging(0.949) TCGA-DK-A6AW-01 1 40756528 40756528 G T ZMPSTE24 Missense_Mutation p.M354I 0.33 tolerated(0.6) benign(0.001) TCGA-DK-A6AW-01 1 40923060 40923060 G T ZFP69B Nonsense_Mutation p.G129* 0.40 TCGA-DK-A6AW-01 1 40961442 40961442 G T ZFP69 Missense_Mutation p.R431I 0.44 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 1 41215314 41215314 C T NFYC Nonsense_Mutation p.R83* 0.55 TCGA-DK-A6AW-01 1 41461671 41461671 G A CTPS1 Missense_Mutation p.R268Q 0.58 tolerated(0.24) benign(0.001) TCGA-DK-A6AW-01 1 41582667 41582667 G A SCMH1 Missense_Mutation p.A133V 0.48 tolerated(0.2) probably_damaging(0.997) TCGA-DK-A6AW-01 1 42046447 42046447 A C HIVEP3 Missense_Mutation p.I1341S 0.51 benign(0.011) TCGA-DK-A6AW-01 1 42048290 42048290 G A HIVEP3 Missense_Mutation p.P727S 0.58 benign(0.268) TCGA-DK-A6AW-01 1 42048498 42048498 G A HIVEP3 Silent p.N657N 0.59 TCGA-DK-A6AW-01 1 42049980 42049980 G T HIVEP3 Silent p.V163V 0.38 TCGA-DK-A6AW-01 1 42922602 42922602 G A PPCS Silent p.E122E 0.42 TCGA-DK-A6AW-01 1 42925550 42925550 G A PPCS Missense_Mutation p.D297N 0.51 tolerated(0.51) benign(0.003) TCGA-DK-A6AW-01 1 43002150 43002150 C A CCDC30 5'UTR 0.56 TCGA-DK-A6AW-01 1 43055078 43055078 C T CCDC30 Missense_Mutation p.S436F 0.39 deleterious(0) possibly_damaging(0.767) TCGA-DK-A6AW-01 1 43777693 43777693 G T TIE1 Missense_Mutation p.M507I 0.39 tolerated(0.19) benign(0.11) TCGA-DK-A6AW-01 1 43906167 43906167 C T SZT2 Silent p.G2361G 0.48 TCGA-DK-A6AW-01 1 43907962 43907962 G A SZT2 Missense_Mutation p.E2576K 0.38 deleterious(0.05) probably_damaging(0.927) TCGA-DK-A6AW-01 1 44160391 44160391 C T KDM4A Silent p.F832F 0.47 TCGA-DK-A6AW-01 1 44360121 44360121 C T ST3GAL3 Silent p.F192F 0.46 TCGA-DK-A6AW-01 1 44680631 44680631 G A DMAP1 Intron 0.46 TCGA-DK-A6AW-01 1 45472633 45472633 G T HECTD3 Silent p.I537I 0.42 TCGA-DK-A6AW-01 1 45797721 45797721 G A MUTYH Missense_Mutation p.S321L 0.42 tolerated(0.59) benign(0) TCGA-DK-A6AW-01 1 46080804 46080804 T C NASP Missense_Mutation p.Y596H 0.45 deleterious(0.02) probably_damaging(0.983) TCGA-DK-A6AW-01 1 46714218 46714218 G A RAD54L Missense_Mutation p.R13K 0.40 tolerated(0.11) benign(0.058) TCGA-DK-A6AW-01 1 46726980 46726980 A G RAD54L Missense_Mutation p.I272V 0.35 deleterious(0.02) benign(0.246) TCGA-DK-A6AW-01 1 47157548 47157548 T G EFCAB14 Missense_Mutation p.K214T 0.56 tolerated(0.52) probably_damaging(0.913) TCGA-DK-A6AW-01 1 47279612 47279612 G A CYP4B1 Missense_Mutation p.D218N 0.46 tolerated(0.16) benign(0.033) TCGA-DK-A6AW-01 1 47401193 47401193 A C CYP4A11 Splice_Site p.X212_splice 0.31 TCGA-DK-A6AW-01 1 47406953 47406953 G A CYP4A11 Silent p.F51F 0.50 TCGA-DK-A6AW-01 1 48699363 48699363 G T SLC5A9 Missense_Mutation p.R382I 0.50 deleterious(0) benign(0.121) TCGA-DK-A6AW-01 1 48771502 48771502 G T SPATA6 Missense_Mutation p.L415I 0.42 tolerated(0.35) benign(0.04) TCGA-DK-A6AW-01 1 48825413 48825413 G A SPATA6 Silent p.F313F 0.38 TCGA-DK-A6AW-01 1 51770785 51770785 G A TTC39A Silent p.L212L 0.37 TCGA-DK-A6AW-01 1 52490248 52490248 C A TXNDC12 Nonsense_Mutation p.E97* 0.37 TCGA-DK-A6AW-01 1 53537230 53537230 C T PODN Silent p.Y160Y 0.61 TCGA-DK-A6AW-01 1 53544160 53544160 G A PODN Silent p.A374A 0.45 TCGA-DK-A6AW-01 1 53546486 53546486 G A PODN Silent p.K581K 0.41 TCGA-DK-A6AW-01 1 53694615 53694615 G A MAGOH Silent p.I90I 0.38 TCGA-DK-A6AW-01 1 53930396 53930396 G A DMRTB1 Silent p.P279P 0.49 TCGA-DK-A6AW-01 1 54233585 54233585 T G NDC1 3'UTR 0.64 TCGA-DK-A6AW-01 1 54534497 54534497 G T TCEANC2 Missense_Mutation p.E57D 0.43 tolerated(0.32) benign(0.02) TCGA-DK-A6AW-01 1 54607036 54607036 C T CDCP2 Silent p.P166P 0.49 TCGA-DK-A6AW-01 1 54656537 54656537 G A CYB5RL Silent p.F77F 0.25 TCGA-DK-A6AW-01 1 54678230 54678230 G A MRPL37 Missense_Mutation p.A297T 0.46 tolerated(0.06) benign(0.285) TCGA-DK-A6AW-01 1 55050380 55050380 C T ACOT11 Missense_Mutation p.A29V 0.39 tolerated_low_confidence(0.06) benign(0.003) TCGA-DK-A6AW-01 1 55139808 55139808 T G MROH7 Missense_Mutation p.I640M 0.50 deleterious(0.01) probably_damaging(0.931) TCGA-DK-A6AW-01 1 55523782 55523782 C A PCSK9 Missense_Mutation p.F418L 0.48 tolerated(0.13) benign(0.19) TCGA-DK-A6AW-01 1 57320640 57320640 G T C8A Missense_Mutation p.E22D 0.26 tolerated(0.29) benign(0.009) TCGA-DK-A6AW-01 1 57491701 57491701 C A DAB1 Nonsense_Mutation p.E247* 0.43 TCGA-DK-A6AW-01 1 60299131 60299131 G A HOOK1 Missense_Mutation p.E110K 0.48 deleterious(0.01) benign(0.052) TCGA-DK-A6AW-01 1 6181594 6181594 T A CHD5 Missense_Mutation p.D1580V 0.38 tolerated_low_confidence(0.07) benign(0.001) TCGA-DK-A6AW-01 1 6184141 6184141 C A CHD5 Silent p.G1522G 0.39 TCGA-DK-A6AW-01 1 61869932 61869932 C T NFIA Missense_Mutation p.A456V 0.46 deleterious(0.01) possibly_damaging(0.81) TCGA-DK-A6AW-01 1 6293587 6293587 A G ICMT Missense_Mutation p.V134A 0.45 tolerated(0.07) benign(0.004) TCGA-DK-A6AW-01 1 62943449 62943449 G A DOCK7 Silent p.F1821F 0.39 TCGA-DK-A6AW-01 1 63001240 63001240 G A DOCK7 Missense_Mutation p.P1148S 0.52 tolerated(0.09) benign(0.022) TCGA-DK-A6AW-01 1 63282329 63282329 G T ATG4C Missense_Mutation p.D82Y 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 1 63307175 63307175 G A ATG4C Missense_Mutation p.R389Q 0.37 tolerated(0.26) benign(0.132) TCGA-DK-A6AW-01 1 64095189 64095189 C A PGM1 Missense_Mutation p.L132M 0.49 tolerated(0.06) probably_damaging(1) TCGA-DK-A6AW-01 1 64643554 64643554 C A ROR1 Missense_Mutation p.F610L 0.39 deleterious(0.04) possibly_damaging(0.464) TCGA-DK-A6AW-01 1 65316517 65316517 G A JAK1 Silent p.F575F 0.56 TCGA-DK-A6AW-01 1 66038085 66038085 G T LEPR Missense_Mutation p.K149N 0.40 tolerated(0.31) benign(0.021) TCGA-DK-A6AW-01 1 6639095 6639095 C A TAS1R1 Silent p.I659I 0.48 TCGA-DK-A6AW-01 1 6640690 6640690 G A ZBTB48 Silent p.Q7Q 0.52 TCGA-DK-A6AW-01 1 6712908 6712908 G A DNAJC11 Missense_Mutation p.S204L 0.45 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 1 67206964 67206964 C A SGIP1 Missense_Mutation p.S770Y 0.44 deleterious(0.01) probably_damaging(0.949) TCGA-DK-A6AW-01 1 67263816 67263816 T C INSL5 Silent p.G96G 0.37 TCGA-DK-A6AW-01 1 67337187 67337187 C A WDR78 Missense_Mutation p.R269I 0.45 deleterious(0) possibly_damaging(0.704) TCGA-DK-A6AW-01 1 67450635 67450635 T G MIER1 3'UTR 0.61 TCGA-DK-A6AW-01 1 67451996 67451996 T G MIER1 3'Flank 0.60 TCGA-DK-A6AW-01 1 67559056 67559056 C A C1orf141 Missense_Mutation p.D279Y 0.41 deleterious(0.01) benign(0.146) TCGA-DK-A6AW-01 1 67895686 67895686 C T SERBP1 Missense_Mutation p.A100T 0.40 tolerated(0.29) benign(0.001) TCGA-DK-A6AW-01 1 70339299 70339299 C T LRRC7 Intron 0.42 TCGA-DK-A6AW-01 1 70504364 70504364 C T LRRC7 Missense_Mutation p.R915C 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-DK-A6AW-01 1 70766571 70766571 T G ANKRD13C Missense_Mutation p.D266A 0.44 deleterious(0.01) probably_damaging(0.929) TCGA-DK-A6AW-01 1 74835186 74835186 C T FPGT-TNNI3K Silent p.C642C 0.46 TCGA-DK-A6AW-01 1 75038072 75038072 C T C1orf173 Missense_Mutation p.E1108K 0.38 deleterious(0) probably_damaging(0.942) TCGA-DK-A6AW-01 1 75038368 75038368 G A C1orf173 Missense_Mutation p.S1009L 0.49 tolerated(0.86) benign(0.007) TCGA-DK-A6AW-01 1 75038858 75038858 C A C1orf173 Nonsense_Mutation p.E846* 0.41 TCGA-DK-A6AW-01 1 76356459 76356459 G A MSH4 Missense_Mutation p.E769K 0.35 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 1 77752811 77752811 T G AK5 Missense_Mutation p.N82K 0.34 tolerated(0.19) benign(0.23) TCGA-DK-A6AW-01 1 77763321 77763321 G T AK5 Nonsense_Mutation p.E165* 0.42 TCGA-DK-A6AW-01 1 77806074 77806074 G A AK5 Missense_Mutation p.D238N 0.43 tolerated(0.06) probably_damaging(1) TCGA-DK-A6AW-01 1 77987619 77987619 C T AK5 Silent p.F473F 0.41 TCGA-DK-A6AW-01 1 78031830 78031830 G A ZZZ3 Missense_Mutation p.R835W 0.43 deleterious(0) probably_damaging(0.954) TCGA-DK-A6AW-01 1 78098390 78098390 T G ZZZ3 Missense_Mutation p.D217A 0.43 tolerated_low_confidence(0.07) benign(0.023) TCGA-DK-A6AW-01 1 7839804 7839804 A C VAMP3 3'UTR 0.54 TCGA-DK-A6AW-01 1 78601497 78601497 G A GIPC2 3'UTR 0.64 TCGA-DK-A6AW-01 1 79101043 79101043 G T IFI44L Missense_Mutation p.D249Y 0.45 tolerated(0.07) possibly_damaging(0.484) TCGA-DK-A6AW-01 1 79106767 79106768 - T IFI44L Frame_Shift_Ins p.L372Ffs*5 0.31 TCGA-DK-A6AW-01 1 79125165 79125165 G A IFI44 Missense_Mutation p.A337T 0.40 deleterious(0.03) benign(0.033) TCGA-DK-A6AW-01 1 79404909 79404909 G T ELTD1 Silent p.V120V 0.41 TCGA-DK-A6AW-01 1 809729 809729 G T FAM41C 5'Flank 0.50 TCGA-DK-A6AW-01 1 82452991 82452991 T G LPHN2 Intron 0.51 TCGA-DK-A6AW-01 1 84412874 84412874 C A TTLL7 Nonsense_Mutation p.E147* 0.45 TCGA-DK-A6AW-01 1 84679905 84679905 A G PRKACB Missense_Mutation p.T326A 0.51 deleterious(0) benign(0.24) TCGA-DK-A6AW-01 1 84815479 84815479 G A SAMD13 3'UTR 0.44 TCGA-DK-A6AW-01 1 84967534 84967534 A C GNG5 Missense_Mutation p.F67L 0.39 tolerated(0.98) benign(0.128) TCGA-DK-A6AW-01 1 84971733 84971733 A C GNG5 Silent p.V14V 0.29 TCGA-DK-A6AW-01 1 85506793 85506793 T C MCOLN3 Missense_Mutation p.K99R 0.17 tolerated(0.3) benign(0.034) TCGA-DK-A6AW-01 1 85561640 85561640 C A WDR63 Silent p.I400I 0.38 TCGA-DK-A6AW-01 1 85561676 85561676 C A WDR63 Silent p.I412I 0.39 TCGA-DK-A6AW-01 1 85634733 85634733 A G SYDE2 Silent p.I949I 0.52 TCGA-DK-A6AW-01 1 85733583 85733583 G T BCL10 Missense_Mutation p.F143L 0.36 tolerated(0.27) benign(0.001) TCGA-DK-A6AW-01 1 86372899 86372899 C T COL24A1 Missense_Mutation p.S919N 0.42 tolerated(0.23) benign(0.026) TCGA-DK-A6AW-01 1 86814663 86814663 C A ODF2L 3'UTR 0.27 TCGA-DK-A6AW-01 1 86909547 86909547 C T CLCA2 Silent p.N522N 0.38 TCGA-DK-A6AW-01 1 86939149 86939149 G A CLCA1 Missense_Mutation p.R71Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 86954771 86954771 C A CLCA1 Silent p.V425V 0.53 TCGA-DK-A6AW-01 1 86965372 86965372 C A CLCA1 Missense_Mutation p.L797I 0.49 tolerated(0.08) benign(0.09) TCGA-DK-A6AW-01 1 86965723 86965723 G A CLCA1 Missense_Mutation p.A914T 0.42 deleterious_low_confidence(0.02) benign(0.062) TCGA-DK-A6AW-01 1 87025630 87025630 G A CLCA4 Missense_Mutation p.A59T 0.53 deleterious(0) probably_damaging(0.978) TCGA-DK-A6AW-01 1 89225997 89225997 G T PKN2 Nonsense_Mutation p.E148* 0.06 TCGA-DK-A6AW-01 1 89448584 89448584 C T RBMXL1 Missense_Mutation p.R309H 0.46 tolerated(0.17) benign(0.226) TCGA-DK-A6AW-01 1 89523768 89523768 C T GBP1 Missense_Mutation p.E261K 0.38 tolerated(0.35) benign(0.154) TCGA-DK-A6AW-01 1 89726327 89726327 C A GBP5 3'UTR 0.42 TCGA-DK-A6AW-01 1 89845951 89845951 A C GBP6 Missense_Mutation p.N211T 0.48 tolerated(0.05) benign(0.248) TCGA-DK-A6AW-01 1 90049614 90049614 C T LRRC8B Missense_Mutation p.R469C 0.45 tolerated(0.18) benign(0.003) TCGA-DK-A6AW-01 1 90399792 90399792 A G LRRC8D Missense_Mutation p.R389G 0.46 tolerated(0.05) possibly_damaging(0.663) TCGA-DK-A6AW-01 1 91406379 91406379 A C ZNF644 Missense_Mutation p.L178V 0.48 tolerated(0.32) possibly_damaging(0.53) TCGA-DK-A6AW-01 1 91781702 91781702 C A HFM1 Nonsense_Mutation p.E980* 0.33 TCGA-DK-A6AW-01 1 91977351 91977351 C A CDC7 Missense_Mutation p.S148Y 0.45 deleterious(0.01) probably_damaging(0.982) TCGA-DK-A6AW-01 1 92442825 92442825 G T BRDT Nonsense_Mutation p.E282* 0.42 TCGA-DK-A6AW-01 1 92456776 92456776 G T BRDT Missense_Mutation p.D680Y 0.50 tolerated(0.08) possibly_damaging(0.789) TCGA-DK-A6AW-01 1 93298950 93298950 T G RPL5 Missense_Mutation p.F3C 0.48 deleterious(0) possibly_damaging(0.792) TCGA-DK-A6AW-01 1 94471003 94471003 G A ABCA4 Silent p.I2047I 0.57 TCGA-DK-A6AW-01 1 94640031 94640031 G A ARHGAP29 Silent p.D1060D 0.45 TCGA-DK-A6AW-01 1 95303343 95303343 A C SLC44A3 Missense_Mutation p.N196H 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 1 9804474 9804474 G T CLSTN1 Missense_Mutation p.L405I 0.40 tolerated(0.09) possibly_damaging(0.512) TCGA-DK-A6AW-01 1 98348868 98348868 C A DPYD Missense_Mutation p.K34N 0.37 deleterious(0.03) possibly_damaging(0.632) TCGA-DK-A6AW-01 1 99470148 99470148 G A LPPR5 Missense_Mutation p.A27V 0.45 tolerated(0.09) benign(0.21) TCGA-DK-A6AW-01 20 10541382 10541382 C A SLX4IP Nonsense_Mutation p.S51* 0.42 TCGA-DK-A6AW-01 20 10601974 10601974 C T SLX4IP Missense_Mutation p.L140F 0.48 tolerated(0.7) benign(0.069) TCGA-DK-A6AW-01 20 10621489 10621489 C T JAG1 Silent p.S1047S 0.44 TCGA-DK-A6AW-01 20 11903562 11903562 C A BTBD3 Missense_Mutation p.L273I 0.54 deleterious(0.02) benign(0.437) TCGA-DK-A6AW-01 20 1286491 1286491 C T SNPH Silent p.I426I 0.46 TCGA-DK-A6AW-01 20 13415694 13415694 G A TASP1 Silent p.L365L 0.42 TCGA-DK-A6AW-01 20 1356228 1356228 C A FKBP1A Missense_Mutation p.K35N 0.40 tolerated(0.06) benign(0.069) TCGA-DK-A6AW-01 20 14066321 14066321 C A MACROD2 Missense_Mutation p.S73Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 20 1426394 1426394 G A NSFL1C Silent p.I291I 0.49 TCGA-DK-A6AW-01 20 1456729 1456729 A C SIRPB2 3'UTR 0.55 TCGA-DK-A6AW-01 20 1615991 1615991 C A SIRPG Missense_Mutation p.G335W 0.47 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 20 16717931 16717931 C T SNRPB2 Missense_Mutation p.S88L 0.56 deleterious(0) probably_damaging(0.913) TCGA-DK-A6AW-01 20 17389978 17389978 T G PCSK2 Missense_Mutation p.F205C 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 20 17492696 17492696 C T BFSP1 Silent p.Q184Q 0.45 TCGA-DK-A6AW-01 20 18005307 18005307 G A OVOL2 Silent p.S267S 0.41 TCGA-DK-A6AW-01 20 18125916 18125917 - T CSRP2BP Frame_Shift_Ins p.R103* 0.45 TCGA-DK-A6AW-01 20 18365118 18365118 G T DZANK1 Silent p.L728L 0.43 TCGA-DK-A6AW-01 20 18377125 18377125 G T DZANK1 Silent p.V534V 0.47 TCGA-DK-A6AW-01 20 20269276 20269276 G A C20orf26 Silent p.K940K 0.44 TCGA-DK-A6AW-01 20 20493455 20493455 G T RALGAPA2 Missense_Mutation p.L1520I 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-DK-A6AW-01 20 20563781 20563781 C A RALGAPA2 Nonsense_Mutation p.E874* 0.35 TCGA-DK-A6AW-01 20 23383639 23383639 T G NAPB Missense_Mutation p.N57H 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-DK-A6AW-01 20 23472204 23472204 C A CST8 5'UTR 0.44 TCGA-DK-A6AW-01 20 24646110 24646110 C T SYNDIG1 Silent p.I249I 0.48 TCGA-DK-A6AW-01 20 2560608 2560608 C T TMC2 Missense_Mutation p.S247F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 20 2597859 2597859 C A TMC2 Missense_Mutation p.F694L 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 20 30510837 30510837 A C TTLL9 Missense_Mutation p.E215D 0.35 tolerated(0.21) benign(0.075) TCGA-DK-A6AW-01 20 30610484 30610484 G A CCM2L Missense_Mutation p.A319T 0.48 deleterious(0.01) possibly_damaging(0.896) TCGA-DK-A6AW-01 20 30616851 30616851 C T CCM2L Missense_Mutation p.L375F 0.43 tolerated_low_confidence(0.27) benign(0.127) TCGA-DK-A6AW-01 20 30795782 30795782 C T POFUT1 Missense_Mutation p.S13F 0.44 tolerated(0.31) benign(0.001) TCGA-DK-A6AW-01 20 30804899 30804899 A C POFUT1 Intron 0.55 TCGA-DK-A6AW-01 20 31024021 31024021 C A ASXL1 Missense_Mutation p.S1169Y 0.48 deleterious(0.01) benign(0.11) TCGA-DK-A6AW-01 20 31628115 31628115 C A BPIFB6 Missense_Mutation p.S378Y 0.55 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 20 31629805 31629805 C T BPIFB6 Missense_Mutation p.S391L 0.45 deleterious(0.02) probably_damaging(0.946) TCGA-DK-A6AW-01 20 33028024 33028024 G A ITCH Silent p.P289P 0.53 TCGA-DK-A6AW-01 20 33577698 33577698 C T MYH7B Silent p.F623F 0.48 TCGA-DK-A6AW-01 20 33586109 33586109 G T MYH7B Missense_Mutation p.E1295D 0.48 benign(0.05) TCGA-DK-A6AW-01 20 33725697 33725697 C T EDEM2 Missense_Mutation p.R159Q 0.46 tolerated(0.29) benign(0.064) TCGA-DK-A6AW-01 20 33969725 33969725 T G UQCC1 Missense_Mutation p.K110T 0.41 deleterious(0.01) benign(0.265) TCGA-DK-A6AW-01 20 34061229 34061229 G A CEP250 Missense_Mutation p.E414K 0.47 possibly_damaging(0.782) TCGA-DK-A6AW-01 20 34144161 34144161 G T ERGIC3 Intron 0.43 TCGA-DK-A6AW-01 20 34451265 34451265 G T PHF20 Nonsense_Mutation p.E251* 0.45 TCGA-DK-A6AW-01 20 34560608 34560608 C T CNBD2 Missense_Mutation p.R37C 0.47 deleterious(0.02) possibly_damaging(0.566) TCGA-DK-A6AW-01 20 35281830 35281830 G T NDRG3 3'UTR 0.62 TCGA-DK-A6AW-01 20 36149680 36149680 A G NNAT 5'UTR 0.46 TCGA-DK-A6AW-01 20 3675114 3675114 G T SIGLEC1 Missense_Mutation p.L1004M 0.60 tolerated(0.13) benign(0.141) TCGA-DK-A6AW-01 20 37076748 37076748 C T SNHG11 Intron 0.46 TCGA-DK-A6AW-01 20 37128103 37128103 G A RALGAPB Silent p.E189E 0.46 TCGA-DK-A6AW-01 20 37191229 37191229 T G RALGAPB Missense_Mutation p.L1196V 0.39 deleterious(0) benign(0.125) TCGA-DK-A6AW-01 20 3904090 3904090 C T PANK2 3'UTR 0.88 TCGA-DK-A6AW-01 20 39317266 39317266 C T MAFB Silent p.P75P 0.43 TCGA-DK-A6AW-01 20 39792785 39792785 G T PLCG1 Missense_Mutation p.K387N 0.46 deleterious(0) probably_damaging(0.947) TCGA-DK-A6AW-01 20 39793950 39793950 C T PLCG1 Silent p.N484N 0.31 TCGA-DK-A6AW-01 20 40042011 40042011 G T CHD6 Missense_Mutation p.L2362I 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A6AW-01 20 419792 419792 C T TBC1D20 Missense_Mutation p.E306K 0.34 tolerated(0.48) benign(0.003) TCGA-DK-A6AW-01 20 42089160 42089160 G A SRSF6 Missense_Mutation p.R199Q 0.45 deleterious(0.04) unknown(0) TCGA-DK-A6AW-01 20 420955 420955 G A TBC1D20 Silent p.V235V 0.49 TCGA-DK-A6AW-01 20 43057090 43057090 A G HNF4A Silent p.G415G 0.07 TCGA-DK-A6AW-01 20 43384763 43384763 C A RIMS4 3'UTR 0.40 TCGA-DK-A6AW-01 20 43836755 43836755 C A SEMG1 Missense_Mutation p.L273I 0.39 tolerated(0.35) probably_damaging(0.966) TCGA-DK-A6AW-01 20 43836996 43836996 C T SEMG1 Missense_Mutation p.T353M 0.46 tolerated(0.06) probably_damaging(0.986) TCGA-DK-A6AW-01 20 43926920 43926920 G A MATN4 Missense_Mutation p.A439V 0.50 benign(0.11) TCGA-DK-A6AW-01 20 44098501 44098501 G T WFDC2 Splice_Site p.X27_splice 0.40 TCGA-DK-A6AW-01 20 44682288 44682288 G T SLC12A5 Missense_Mutation p.K896N 0.42 deleterious(0.02) possibly_damaging(0.853) TCGA-DK-A6AW-01 20 45131340 45131340 T G ZNF334 Missense_Mutation p.K213T 0.43 tolerated(0.21) benign(0.265) TCGA-DK-A6AW-01 20 45217865 45217865 C A SLC13A3 Missense_Mutation p.R317I 0.45 deleterious(0.05) benign(0.392) TCGA-DK-A6AW-01 20 45239190 45239190 C T SLC13A3 Missense_Mutation p.A146T 0.39 deleterious(0) probably_damaging(0.924) TCGA-DK-A6AW-01 20 46264067 46264067 G T NCOA3 Nonsense_Mutation p.E372* 0.46 TCGA-DK-A6AW-01 20 4705564 4705564 C T PRND Missense_Mutation p.P123S 0.46 tolerated_low_confidence(0.06) benign(0.031) TCGA-DK-A6AW-01 20 47683035 47683035 C A CSE1L Nonsense_Mutation p.S155* 0.50 TCGA-DK-A6AW-01 20 47706078 47706078 T G CSE1L Missense_Mutation p.F659C 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A6AW-01 20 47865810 47865810 G A ZNFX1 Nonsense_Mutation p.R1251* 0.08 TCGA-DK-A6AW-01 20 47874004 47874004 A G ZNFX1 Missense_Mutation p.C872R 0.49 tolerated(0.42) benign(0) TCGA-DK-A6AW-01 20 47886966 47886966 G A ZNFX1 Silent p.F461F 0.47 TCGA-DK-A6AW-01 20 47990997 47990997 G T KCNB1 Missense_Mutation p.S367Y 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 20 479928 479928 A C CSNK2A1 Missense_Mutation p.F113V 0.53 deleterious(0.01) probably_damaging(0.95) TCGA-DK-A6AW-01 20 48164483 48164483 C T PTGIS Missense_Mutation p.R91H 0.49 deleterious(0.02) benign(0.019) TCGA-DK-A6AW-01 20 48732032 48732032 A G UBE2V1 Silent p.F27F 0.50 TCGA-DK-A6AW-01 20 50230355 50230355 G A ATP9A Missense_Mutation p.S811L 0.42 deleterious(0) possibly_damaging(0.855) TCGA-DK-A6AW-01 20 50768640 50768640 C A ZFP64 3'UTR 0.52 TCGA-DK-A6AW-01 20 51871901 51871901 G A TSHZ2 Missense_Mutation p.R635H 0.43 tolerated(0.1) benign(0.004) TCGA-DK-A6AW-01 20 52198015 52198015 C T ZNF217 Missense_Mutation p.E451K 0.45 deleterious(0.01) possibly_damaging(0.852) TCGA-DK-A6AW-01 20 54824013 54824013 C A MC3R Silent p.V38V 0.47 TCGA-DK-A6AW-01 20 54958042 54958042 G A AURKA Missense_Mutation p.R189W 0.42 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 20 55906944 55906944 G A SPO11 Missense_Mutation p.A63T 0.42 tolerated(0.25) benign(0.025) TCGA-DK-A6AW-01 20 55949952 55949952 A G RAE1 Intron 0.50 TCGA-DK-A6AW-01 20 56735719 56735719 C A C20orf85 Silent p.V85V 0.47 TCGA-DK-A6AW-01 20 56928332 56928332 C T RAB22A Missense_Mutation p.R68C 0.50 tolerated(0.07) benign(0.026) TCGA-DK-A6AW-01 20 57485818 57485818 C T GNAS Silent p.R1016R 0.41 TCGA-DK-A6AW-01 20 5753645 5753645 C A C20orf196 Missense_Mutation p.S45Y 0.45 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 20 57566943 57566943 G A NELFCD Missense_Mutation p.R384Q 0.55 tolerated(0.07) benign(0.386) TCGA-DK-A6AW-01 20 57767444 57767444 G A ZNF831 Missense_Mutation p.R457H 0.39 deleterious(0) possibly_damaging(0.664) TCGA-DK-A6AW-01 20 58349367 58349367 C T PHACTR3 Silent p.S332S 0.49 TCGA-DK-A6AW-01 20 58441368 58441368 C A SYCP2 Missense_Mutation p.D1434Y 0.32 deleterious(0.02) benign(0.091) TCGA-DK-A6AW-01 20 58467368 58467368 T A SYCP2 Nonsense_Mutation p.K681* 0.43 TCGA-DK-A6AW-01 20 58587806 58587806 G T CDH26 3'UTR 0.46 TCGA-DK-A6AW-01 20 5904110 5904110 C A CHGB Missense_Mutation p.F440L 0.49 tolerated(0.26) benign(0.096) TCGA-DK-A6AW-01 20 5904252 5904252 G A CHGB Missense_Mutation p.D488N 0.47 deleterious(0) probably_damaging(0.96) TCGA-DK-A6AW-01 20 5924673 5924673 C A TRMT6 Nonsense_Mutation p.E155* 0.42 TCGA-DK-A6AW-01 20 5948132 5948132 G A MCM8 Missense_Mutation p.R309Q 0.44 deleterious(0) possibly_damaging(0.803) TCGA-DK-A6AW-01 20 60575195 60575195 C A TAF4 Missense_Mutation p.K924N 0.44 possibly_damaging(0.833) TCGA-DK-A6AW-01 20 60734978 60734978 C T SS18L1 Silent p.I64I 0.33 TCGA-DK-A6AW-01 20 60791386 60791386 C A HRH3 Missense_Mutation p.K338N 0.50 tolerated(0.36) benign(0.298) TCGA-DK-A6AW-01 20 61982273 61982273 C T CHRNA4 Missense_Mutation p.D164N 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A6AW-01 20 62378298 62378298 G A ZBTB46 Silent p.F585F 0.50 TCGA-DK-A6AW-01 20 62505046 62505046 G A TPD52L2 Missense_Mutation p.R64H 0.49 deleterious(0.03) benign(0.344) TCGA-DK-A6AW-01 20 7866180 7866180 T C HAO1 Missense_Mutation p.M344V 0.37 deleterious(0.01) possibly_damaging(0.741) TCGA-DK-A6AW-01 20 7976670 7976670 T G TMX4 Intron 0.46 TCGA-DK-A6AW-01 20 7980417 7980417 G A TMX4 Silent p.V143V 0.47 TCGA-DK-A6AW-01 20 9496171 9496171 G T LAMP5 Missense_Mutation p.D46Y 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-DK-A6AW-01 21 10914413 10914413 C A TPTE Nonsense_Mutation p.E436* 0.14 TCGA-DK-A6AW-01 21 10933880 10933880 G A TPTE Silent p.I333I 0.21 TCGA-DK-A6AW-01 21 11039340 11039340 C A BAGE2 RNA 0.05 TCGA-DK-A6AW-01 21 11047536 11047536 G T BAGE2 RNA 0.07 TCGA-DK-A6AW-01 21 11049563 11049563 G T BAGE2 RNA 0.08 TCGA-DK-A6AW-01 21 11058204 11058204 G T BAGE2 RNA 0.10 TCGA-DK-A6AW-01 21 11098765 11098765 C A BAGE2 RNA 0.05 TCGA-DK-A6AW-01 21 15481218 15481218 C A LIPI 3'UTR 0.23 TCGA-DK-A6AW-01 21 15870859 15870859 C A SAMSN1 Missense_Mutation p.D343Y 0.54 tolerated(0.07) benign(0.149) TCGA-DK-A6AW-01 21 16339360 16339360 T G NRIP1 Missense_Mutation p.K385T 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A6AW-01 21 17962587 17962587 A C MIR125B2 RNA 0.47 TCGA-DK-A6AW-01 21 18931335 18931335 G T CXADR Nonsense_Mutation p.E153* 0.33 TCGA-DK-A6AW-01 21 19169380 19169380 G A C21orf91 Silent p.C61C 0.46 TCGA-DK-A6AW-01 21 19775870 19775870 G A TMPRSS15 Missense_Mutation p.L24F 0.35 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 21 22664492 22664492 T C NCAM2 Missense_Mutation p.Y184H 0.39 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 21 22782647 22782647 C T NCAM2 Missense_Mutation p.P417S 0.33 deleterious(0.03) benign(0.356) TCGA-DK-A6AW-01 21 22881348 22881348 G T NCAM2 Nonsense_Mutation p.E752* 0.46 TCGA-DK-A6AW-01 21 26978866 26978866 T G MRPL39 Missense_Mutation p.T59P 0.40 tolerated(0.19) possibly_damaging(0.782) TCGA-DK-A6AW-01 21 27117528 27117528 G T GABPA Nonsense_Mutation p.E29* 0.50 TCGA-DK-A6AW-01 21 27284162 27284162 C T APP Silent p.T600T 0.42 TCGA-DK-A6AW-01 21 27372406 27372406 G T APP Missense_Mutation p.F319L 0.41 deleterious(0.03) possibly_damaging(0.649) TCGA-DK-A6AW-01 21 31538518 31538518 T C CLDN17 Missense_Mutation p.T140A 0.46 deleterious(0.02) benign(0.259) TCGA-DK-A6AW-01 21 33044145 33044145 G T SCAF4 Missense_Mutation p.S1004Y 0.49 unknown(0) TCGA-DK-A6AW-01 21 33065732 33065732 C T SCAF4 Missense_Mutation p.R463Q 0.31 benign(0.238) TCGA-DK-A6AW-01 21 33951098 33951098 T C TCP10L Missense_Mutation p.D135G 0.19 deleterious(0.04) possibly_damaging(0.603) TCGA-DK-A6AW-01 21 33974644 33974644 T G AP000275.65 Intron 0.41 TCGA-DK-A6AW-01 21 34045731 34045731 G A SYNJ1 Missense_Mutation p.R588C 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 21 34045776 34045776 G A SYNJ1 Nonsense_Mutation p.R573* 0.40 TCGA-DK-A6AW-01 21 34142228 34142228 C A PAXBP1 Missense_Mutation p.K123N 0.38 deleterious(0) probably_damaging(0.981) TCGA-DK-A6AW-01 21 34805069 34805069 C T IFNGR2 Missense_Mutation p.S257L 0.41 tolerated(0.84) benign(0.001) TCGA-DK-A6AW-01 21 34931660 34931660 A C SON Missense_Mutation p.K2149T 0.37 unknown(0) TCGA-DK-A6AW-01 21 35147085 35147085 G A ITSN1 Missense_Mutation p.R453Q 0.53 deleterious(0) unknown(0) TCGA-DK-A6AW-01 21 35231051 35231051 T G ITSN1 Missense_Mutation p.F1282C 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 21 35247748 35247748 G A ITSN1 Missense_Mutation p.E1422K 0.47 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AW-01 21 38612805 38612805 A C DSCR3 Missense_Mutation p.S65A 0.51 deleterious(0.02) possibly_damaging(0.863) TCGA-DK-A6AW-01 21 38853090 38853090 G A DYRK1A Missense_Mutation p.E160K 0.47 deleterious(0.04) benign(0.276) TCGA-DK-A6AW-01 21 39492502 39492502 T G DSCR4 Missense_Mutation p.R43S 0.52 benign(0.402) TCGA-DK-A6AW-01 21 39580698 39580698 G T DSCR10 RNA 0.50 TCGA-DK-A6AW-01 21 40182008 40182008 A G ETS2 Missense_Mutation p.N17S 0.61 tolerated_low_confidence(0.42) benign(0.001) TCGA-DK-A6AW-01 21 40191557 40191557 C T ETS2 Silent p.F314F 0.44 TCGA-DK-A6AW-01 21 41163967 41163967 C T IGSF5 Missense_Mutation p.T330I 0.36 tolerated(0.05) possibly_damaging(0.86) TCGA-DK-A6AW-01 21 41550860 41550860 C T DSCAM Missense_Mutation p.E981K 0.42 deleterious(0.01) benign(0) TCGA-DK-A6AW-01 21 41741077 41741077 G A DSCAM Nonsense_Mutation p.R202* 0.43 TCGA-DK-A6AW-01 21 43412284 43412284 G A ZBTB21 Missense_Mutation p.R641C 0.40 deleterious(0.04) probably_damaging(1) TCGA-DK-A6AW-01 21 43412609 43412609 G A ZBTB21 Silent p.D532D 0.39 TCGA-DK-A6AW-01 21 43536027 43536027 T G UMODL1 Missense_Mutation p.Y931D 0.41 deleterious(0) possibly_damaging(0.683) TCGA-DK-A6AW-01 21 43543261 43543261 G A UMODL1 Splice_Site p.X1177_splice 0.49 TCGA-DK-A6AW-01 21 43705996 43705996 G A ABCG1 Missense_Mutation p.V289I 0.42 tolerated(1) benign(0.004) TCGA-DK-A6AW-01 21 43708135 43708135 G A ABCG1 Silent p.R370R 0.46 TCGA-DK-A6AW-01 21 43796747 43796747 G T TMPRSS3 Missense_Mutation p.S366Y 0.39 deleterious(0) probably_damaging(0.98) TCGA-DK-A6AW-01 21 43912945 43912945 C T RSPH1 Missense_Mutation p.R66Q 0.35 tolerated(0.07) possibly_damaging(0.782) TCGA-DK-A6AW-01 21 44188330 44188330 C A PDE9A Silent p.I463I 0.57 TCGA-DK-A6AW-01 21 44590650 44590650 C T CRYAA Silent p.F71F 0.60 TCGA-DK-A6AW-01 21 45212582 45212582 C T RRP1 Silent p.L82L 0.45 TCGA-DK-A6AW-01 21 45390613 45390613 T C AGPAT3 Missense_Mutation p.L197P 0.41 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 21 45811154 45811154 G A TRPM2 Splice_Site p.X481_splice 0.44 TCGA-DK-A6AW-01 21 45819208 45819208 G A TRPM2 Missense_Mutation p.E698K 0.49 deleterious(0.01) probably_damaging(0.97) TCGA-DK-A6AW-01 21 47538567 47538567 G T COL6A2 Nonsense_Mutation p.E386* 0.39 TCGA-DK-A6AW-01 21 47542819 47542819 G A COL6A2 Missense_Mutation p.E547K 0.44 tolerated(0.38) benign(0.003) TCGA-DK-A6AW-01 21 47558817 47558817 C A FTCD Missense_Mutation p.K427N 0.38 deleterious(0) benign(0.397) TCGA-DK-A6AW-01 21 47660801 47660801 G A MCM3AP Nonsense_Mutation p.R1853* 0.51 TCGA-DK-A6AW-01 21 47769079 47769079 C T PCNT Nonsense_Mutation p.Q396* 0.42 TCGA-DK-A6AW-01 21 47810624 47810624 G T PCNT Nonsense_Mutation p.E1294* 0.42 TCGA-DK-A6AW-01 22 16256672 16256672 A G POTEH 3'UTR 0.08 TCGA-DK-A6AW-01 22 17472817 17472817 C A GAB4 Nonsense_Mutation p.E142* 0.47 TCGA-DK-A6AW-01 22 17488849 17488849 C A GAB4 Missense_Mutation p.E52D 0.48 deleterious(0.01) possibly_damaging(0.523) TCGA-DK-A6AW-01 22 17619241 17619241 G A CECR5 Silent p.N314N 0.46 TCGA-DK-A6AW-01 22 18189553 18189553 C T BCL2L13 Intron 0.12 TCGA-DK-A6AW-01 22 18609759 18609759 G A TUBA8 Silent p.K338K 0.38 TCGA-DK-A6AW-01 22 18975379 18975379 C T DGCR5 RNA 0.56 TCGA-DK-A6AW-01 22 19511427 19511427 C T CLDN5 Missense_Mutation p.A203T 0.48 tolerated(0.13) benign(0.304) TCGA-DK-A6AW-01 22 19960541 19960541 C T ARVCF Silent p.A819A 0.44 TCGA-DK-A6AW-01 22 19978249 19978249 G A ARVCF Silent p.F23F 0.30 TCGA-DK-A6AW-01 22 20114625 20114625 A C RANBP1 3'UTR 0.33 TCGA-DK-A6AW-01 22 20458035 20458035 C T RIMBP3 Silent p.P1089P 0.23 TCGA-DK-A6AW-01 22 20458674 20458674 G T RIMBP3 Missense_Mutation p.F876L 0.18 deleterious(0) probably_damaging(0.928) TCGA-DK-A6AW-01 22 21083623 21083623 G A PI4KA Silent p.L1554L 0.38 TCGA-DK-A6AW-01 22 21088061 21088061 G A PI4KA Missense_Mutation p.R1375C 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 22 21133909 21133909 G A SERPIND1 Silent p.P103P 0.47 TCGA-DK-A6AW-01 22 21242113 21242113 C T SNAP29 Nonsense_Mutation p.R256* 0.38 TCGA-DK-A6AW-01 22 21337335 21337335 G A LZTR1 Missense_Mutation p.V74M 0.52 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 22 21342377 21342377 G A LZTR1 Missense_Mutation p.G160D 0.42 deleterious(0.02) probably_damaging(0.964) TCGA-DK-A6AW-01 22 21369616 21369616 C A P2RX6 Silent p.V51V 0.08 TCGA-DK-A6AW-01 22 21398453 21398453 G A AC002472.13 5'Flank 0.50 TCGA-DK-A6AW-01 22 22697762 22697762 C T IGLV9-49 Missense_Mutation p.S17F 0.39 tolerated(0.09) possibly_damaging(0.553) TCGA-DK-A6AW-01 22 22868741 22868741 A G ZNF280A Missense_Mutation p.V405A 0.45 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 22 22988878 22988878 G A GGTLC2 Silent p.P21P 0.42 TCGA-DK-A6AW-01 22 23438564 23438564 C T GNAZ Missense_Mutation p.L228F 0.43 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AW-01 22 23744254 23744254 C A ZDHHC8P1 Intron 0.57 TCGA-DK-A6AW-01 22 24219405 24219405 T C SLC2A11 Intron 0.42 TCGA-DK-A6AW-01 22 24709367 24709367 A C SPECC1L Silent p.P80P 0.46 TCGA-DK-A6AW-01 22 24837152 24837152 G T ADORA2A Nonsense_Mutation p.E312* 0.57 TCGA-DK-A6AW-01 22 24898112 24898112 C T UPB1 Missense_Mutation p.R99C 0.37 deleterious(0) probably_damaging(0.951) TCGA-DK-A6AW-01 22 24943897 24943897 G A GUCD1 Silent p.V91V 0.50 TCGA-DK-A6AW-01 22 24984230 24984230 G A FAM211B Missense_Mutation p.S125L 0.28 deleterious(0) possibly_damaging(0.787) TCGA-DK-A6AW-01 22 25023473 25023473 G A GGT1 Silent p.P365P 0.15 TCGA-DK-A6AW-01 22 25756051 25756051 G A LRP5L Silent p.G3G 0.45 TCGA-DK-A6AW-01 22 26110491 26110491 C T ADRBK2 Silent p.I536I 0.46 TCGA-DK-A6AW-01 22 26423091 26423091 G T MYO18B Missense_Mutation p.R2384M 0.47 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 22 26771620 26771620 C A SEZ6L Silent p.S969S 0.33 TCGA-DK-A6AW-01 22 26776231 26776231 G T SEZ6L Splice_Site p.X1016_splice 0.38 TCGA-DK-A6AW-01 22 27012279 27012279 G T CRYBB1 Missense_Mutation p.S2Y 0.53 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-DK-A6AW-01 22 29709618 29709618 G T RASL10A Intron 0.36 TCGA-DK-A6AW-01 22 29735105 29735105 G A AP1B1 Silent p.F679F 0.47 TCGA-DK-A6AW-01 22 29738337 29738337 G T AP1B1 Silent p.L491L 0.24 TCGA-DK-A6AW-01 22 30090776 30090776 C A NF2 Missense_Mutation p.F591L 0.45 tolerated(0.34) benign(0.098) TCGA-DK-A6AW-01 22 30682314 30682314 G T GATSL3 Missense_Mutation p.F227L 0.43 deleterious(0) probably_damaging(0.953) TCGA-DK-A6AW-01 22 30951674 30951674 C T GAL3ST1 Missense_Mutation p.V180M 0.48 tolerated(0.06) possibly_damaging(0.595) TCGA-DK-A6AW-01 22 32009687 32009687 G A SFI1 Missense_Mutation p.A948T 0.23 tolerated(0.53) benign(0.009) TCGA-DK-A6AW-01 22 32108125 32108125 G A PRR14L Silent p.I1900I 0.47 TCGA-DK-A6AW-01 22 32627031 32627031 G A SLC5A4 Silent p.C351C 0.40 TCGA-DK-A6AW-01 22 32650179 32650179 C T SLC5A4 Missense_Mutation p.G53S 0.45 tolerated(0.38) benign(0.019) TCGA-DK-A6AW-01 22 35734743 35734743 G A TOM1 Missense_Mutation p.A396T 0.58 deleterious(0.05) probably_damaging(0.97) TCGA-DK-A6AW-01 22 35813773 35813773 G A MCM5 Missense_Mutation p.A543T 0.39 tolerated(0.08) possibly_damaging(0.595) TCGA-DK-A6AW-01 22 35947785 35947785 C T RASD2 Silent p.F169F 0.40 TCGA-DK-A6AW-01 22 36003342 36003342 G A MB 3'UTR 0.53 TCGA-DK-A6AW-01 22 36006937 36006937 G A MB Silent p.Y104Y 0.62 TCGA-DK-A6AW-01 22 36122895 36122895 G A APOL5 Silent p.K260K 0.39 TCGA-DK-A6AW-01 22 36164307 36164307 G A RBFOX2 Silent p.I251I 0.44 TCGA-DK-A6AW-01 22 36236260 36236260 C A RBFOX2 Intron 0.39 TCGA-DK-A6AW-01 22 36236268 36236268 A G RBFOX2 Intron 0.40 TCGA-DK-A6AW-01 22 36236416 36236416 C A RBFOX2 Intron 0.37 TCGA-DK-A6AW-01 22 37770227 37770227 C T ELFN2 Missense_Mutation p.G450S 0.42 tolerated(0.32) benign(0.01) TCGA-DK-A6AW-01 22 38322039 38322039 C T MICALL1 Missense_Mutation p.A485V 0.58 deleterious(0.01) benign(0.359) TCGA-DK-A6AW-01 22 38878563 38878563 G A KDELR3 3'Flank 0.53 TCGA-DK-A6AW-01 22 40139791 40139791 G A ENTHD1 Missense_Mutation p.L573F 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 22 40364209 40364209 C T GRAP2 Missense_Mutation p.A208V 0.30 tolerated(0.32) benign(0.016) TCGA-DK-A6AW-01 22 40417824 40417824 G A FAM83F Missense_Mutation p.R437H 0.37 deleterious_low_confidence(0.04) benign(0.022) TCGA-DK-A6AW-01 22 40662520 40662520 A C TNRC6B Missense_Mutation p.E762D 0.45 tolerated(0.9) benign(0.003) TCGA-DK-A6AW-01 22 41363815 41363815 T G RBX1 Missense_Mutation p.F81V 0.42 deleterious(0.03) possibly_damaging(0.849) TCGA-DK-A6AW-01 22 41513203 41513203 T G EP300 Missense_Mutation p.L36R 0.45 unknown(0) TCGA-DK-A6AW-01 22 41973848 41973848 G A PMM1 Silent p.F210F 0.45 TCGA-DK-A6AW-01 22 42033762 42033762 G A XRCC6 Missense_Mutation p.R247H 0.38 deleterious(0.01) benign(0.134) TCGA-DK-A6AW-01 22 42139154 42139154 C T MEI1 Nonsense_Mutation p.R468* 0.61 TCGA-DK-A6AW-01 22 42221787 42221787 G A CCDC134 Missense_Mutation p.R217Q 0.46 tolerated(0.19) probably_damaging(0.99) TCGA-DK-A6AW-01 22 42388764 42388764 G A SEPT3 Missense_Mutation p.E288K 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A6AW-01 22 43465669 43465669 C A TTLL1 Missense_Mutation p.D99Y 0.43 tolerated(0.15) benign(0.134) TCGA-DK-A6AW-01 22 43985990 43985990 G T EFCAB6 Missense_Mutation p.S999Y 0.46 tolerated(1) benign(0.284) TCGA-DK-A6AW-01 22 44893339 44893339 C T LDOC1L Missense_Mutation p.R33H 0.57 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-DK-A6AW-01 22 44966383 44966383 C A LINC00207 RNA 0.28 TCGA-DK-A6AW-01 22 45574463 45574463 A C NUP50 Missense_Mutation p.K229Q 0.45 tolerated(0.22) benign(0.04) TCGA-DK-A6AW-01 22 45608279 45608279 C T KIAA0930 5'UTR 0.48 TCGA-DK-A6AW-01 22 45996314 45996314 G T FBLN1 Missense_Mutation p.E700D 0.48 tolerated(0.11) possibly_damaging(0.636) TCGA-DK-A6AW-01 22 46658154 46658154 G T PKDREJ Missense_Mutation p.L356M 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 22 46762916 46762916 C T CELSR1 Missense_Mutation p.A2727T 0.38 tolerated(0.66) benign(0.014) TCGA-DK-A6AW-01 22 50197917 50197917 T C BRD1 Missense_Mutation p.R487G 0.42 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 22 50216642 50216642 C A BRD1 Missense_Mutation p.A442S 0.47 tolerated(0.68) benign(0.049) TCGA-DK-A6AW-01 22 50518416 50518416 C T MLC1 Silent p.T118T 0.43 TCGA-DK-A6AW-01 22 50518441 50518441 T G MLC1 Missense_Mutation p.N110T 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.84) TCGA-DK-A6AW-01 22 50523212 50523212 C T MLC1 Silent p.S40S 0.45 TCGA-DK-A6AW-01 22 50591560 50591560 C A MOV10L1 Silent p.V993V 0.52 TCGA-DK-A6AW-01 22 51133298 51133298 G A SHANK3 Missense_Mutation p.D376N 0.35 probably_damaging(0.983) TCGA-DK-A6AW-01 2 100199428 100199428 C A AFF3 Missense_Mutation p.M900I 0.39 tolerated(0.15) benign(0.002) TCGA-DK-A6AW-01 2 100209921 100209921 G A AFF3 Silent p.I759I 0.41 TCGA-DK-A6AW-01 2 101581385 101581385 A T NPAS2 Missense_Mutation p.K260N 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 101924795 101924795 C A RNF149 Missense_Mutation p.D86Y 0.41 deleterious(0) benign(0.316) TCGA-DK-A6AW-01 2 102440402 102440402 G T MAP4K4 Nonsense_Mutation p.E65* 0.33 TCGA-DK-A6AW-01 2 102835524 102835524 G A IL1RL2 Missense_Mutation p.R279Q 0.44 tolerated(0.08) possibly_damaging(0.519) TCGA-DK-A6AW-01 2 102849459 102849459 A C IL1RL2 Missense_Mutation p.K391T 0.39 deleterious(0) possibly_damaging(0.812) TCGA-DK-A6AW-01 2 103061722 103061722 C T IL18RAP Missense_Mutation p.R332C 0.39 deleterious(0.01) possibly_damaging(0.901) TCGA-DK-A6AW-01 2 103148875 103148875 G T SLC9A4 Nonsense_Mutation p.E709* 0.46 TCGA-DK-A6AW-01 2 103300682 103300682 C T SLC9A2 Nonsense_Mutation p.R438* 0.50 TCGA-DK-A6AW-01 2 107049441 107049441 C A RGPD3 Missense_Mutation p.D807Y 0.26 deleterious(0) benign(0.059) TCGA-DK-A6AW-01 2 10717848 10717848 G A NOL10 Missense_Mutation p.R621C 0.44 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 2 108488568 108488568 G T RGPD4 Missense_Mutation p.D1370Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 2 108626705 108626705 C T SLC5A7 Silent p.I377I 0.35 TCGA-DK-A6AW-01 2 112590880 112590880 T G ANAPC1 Missense_Mutation p.K798T 0.43 deleterious(0.02) benign(0.021) TCGA-DK-A6AW-01 2 112605390 112605390 T C ANAPC1 Missense_Mutation p.D568G 0.43 tolerated(0.13) benign(0.352) TCGA-DK-A6AW-01 2 112630946 112630946 C A ANAPC1 Missense_Mutation p.S156I 0.41 deleterious(0) benign(0.009) TCGA-DK-A6AW-01 2 113089006 113089006 C A ZC3H6 Missense_Mutation p.F837L 0.48 tolerated(0.1) benign(0.104) TCGA-DK-A6AW-01 2 113146031 113146031 T C RGPD8 Silent p.E1497E 0.45 TCGA-DK-A6AW-01 2 113181836 113181836 C A RGPD8 Nonsense_Mutation p.E41* 0.25 TCGA-DK-A6AW-01 2 11361431 11361431 G A ROCK2 Silent p.F384F 0.12 TCGA-DK-A6AW-01 2 113994231 113994231 T A PAX8 Missense_Mutation p.N282I 0.50 tolerated(0.08) benign(0.165) TCGA-DK-A6AW-01 2 11706766 11706766 C T GREB1 Silent p.G146G 0.46 TCGA-DK-A6AW-01 2 11738035 11738035 G A GREB1 Missense_Mutation p.D695N 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 2 11809716 11809716 G A NTSR2 Silent p.L180L 0.48 TCGA-DK-A6AW-01 2 11943091 11943091 G A LPIN1 Missense_Mutation p.A698T 0.43 tolerated(0.59) benign(0.003) TCGA-DK-A6AW-01 2 120831703 120831703 G A EPB41L5 Missense_Mutation p.R119Q 0.29 deleterious(0.02) benign(0.441) TCGA-DK-A6AW-01 2 120925563 120925563 C A EPB41L5 Missense_Mutation p.F705L 0.47 tolerated_low_confidence(0.41) benign(0.006) TCGA-DK-A6AW-01 2 121747326 121747326 A G GLI2 Missense_Mutation p.H1279R 0.48 tolerated_low_confidence(0.17) benign(0.001) TCGA-DK-A6AW-01 2 122159134 122159134 A C CLASP1 Missense_Mutation p.L951V 0.06 deleterious(0) possibly_damaging(0.573) TCGA-DK-A6AW-01 2 125261967 125261967 T G CNTNAP5 Missense_Mutation p.I386M 0.44 tolerated(0.12) benign(0.196) TCGA-DK-A6AW-01 2 125262038 125262038 C A CNTNAP5 Missense_Mutation p.S410Y 0.39 tolerated(0.12) possibly_damaging(0.46) TCGA-DK-A6AW-01 2 125521709 125521709 C T CNTNAP5 Nonsense_Mutation p.R839* 0.40 TCGA-DK-A6AW-01 2 125669092 125669092 G A CNTNAP5 Missense_Mutation p.R1234Q 0.71 tolerated(0.35) benign(0.003) TCGA-DK-A6AW-01 2 1271232 1271232 C T SNTG2 Silent p.I391I 0.41 TCGA-DK-A6AW-01 2 128184779 128184779 G T PROC Missense_Mutation p.K259N 0.40 tolerated(0.17) benign(0.241) TCGA-DK-A6AW-01 2 12863671 12863671 G A TRIB2 Missense_Mutation p.E186K 0.47 tolerated(0.33) benign(0.023) TCGA-DK-A6AW-01 2 128939849 128939849 G A UGGT1 Missense_Mutation p.R1410Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 130832855 130832855 G T POTEF Silent p.V730V 0.47 TCGA-DK-A6AW-01 2 130832980 130832980 T G POTEF Missense_Mutation p.N689H 0.56 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-DK-A6AW-01 2 130843419 130843419 T G POTEF Missense_Mutation p.Q582H 1.00 deleterious_low_confidence(0) benign(0.343) TCGA-DK-A6AW-01 2 131522044 131522044 C T AMER3 Missense_Mutation p.A800V 0.56 tolerated(0.22) benign(0.001) TCGA-DK-A6AW-01 2 132263950 132263950 C T AC093838.4 RNA 0.41 TCGA-DK-A6AW-01 2 133540572 133540572 G T NCKAP5 Missense_Mutation p.A1271D 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 135744355 135744355 C T MAP3K19 Missense_Mutation p.R696H 0.42 deleterious(0.04) benign(0.04) TCGA-DK-A6AW-01 2 136473239 136473239 T G R3HDM1 Missense_Mutation p.F917L 0.44 tolerated(0.14) probably_damaging(0.995) TCGA-DK-A6AW-01 2 136620272 136620272 G A MCM6 Silent p.G375G 0.41 TCGA-DK-A6AW-01 2 136700954 136700954 A C DARS Silent p.V139V 0.43 TCGA-DK-A6AW-01 2 137814122 137814122 G T THSD7B Missense_Mutation p.R91I 0.52 deleterious(0) possibly_damaging(0.506) TCGA-DK-A6AW-01 2 138208517 138208517 G T THSD7B Missense_Mutation p.R1021I 0.47 deleterious(0) unknown(0) TCGA-DK-A6AW-01 2 141607884 141607884 G T LRP1B Missense_Mutation p.L1576I 0.37 benign(0.364) TCGA-DK-A6AW-01 2 141643890 141643890 A C LRP1B Missense_Mutation p.F1261V 0.44 benign(0.307) TCGA-DK-A6AW-01 2 1418194 1418194 C T TPO Missense_Mutation p.A5V 0.50 tolerated(0.64) benign(0.002) TCGA-DK-A6AW-01 2 141986767 141986767 G T LRP1B Missense_Mutation p.L279I 0.55 benign(0.364) TCGA-DK-A6AW-01 2 142012121 142012121 C T LRP1B Missense_Mutation p.E145K 0.42 benign(0.305) TCGA-DK-A6AW-01 2 143913201 143913201 G A ARHGAP15 Missense_Mutation p.D48N 0.38 tolerated(0.06) benign(0.426) TCGA-DK-A6AW-01 2 144194606 144194606 C A ARHGAP15 Missense_Mutation p.S233Y 0.50 deleterious(0.01) possibly_damaging(0.866) TCGA-DK-A6AW-01 2 144381797 144381797 T C ARHGAP15 Missense_Mutation p.F367L 0.48 tolerated(0.11) probably_damaging(0.978) TCGA-DK-A6AW-01 2 144714776 144714776 G T GTDC1 Missense_Mutation p.F372L 0.43 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 2 14774214 14774214 C T FAM84A Silent p.F37F 0.47 TCGA-DK-A6AW-01 2 149226871 149226871 T G MBD5 Missense_Mutation p.I453M 0.54 tolerated(0.43) possibly_damaging(0.506) TCGA-DK-A6AW-01 2 149240944 149240944 G T MBD5 Silent p.V928V 0.40 TCGA-DK-A6AW-01 2 150426583 150426583 G A MMADHC Missense_Mutation p.R266C 0.46 deleterious(0.01) probably_damaging(0.993) TCGA-DK-A6AW-01 2 152226674 152226674 G T TNFAIP6 Missense_Mutation p.D179Y 0.35 deleterious(0.01) benign(0.321) TCGA-DK-A6AW-01 2 152512534 152512534 C A NEB Nonsense_Mutation p.E2167* 0.47 TCGA-DK-A6AW-01 2 152512956 152512956 T C NEB Missense_Mutation p.E2069G 0.45 probably_damaging(0.988) TCGA-DK-A6AW-01 2 153519154 153519154 C A PRPF40A Missense_Mutation p.R762I 0.38 deleterious(0) possibly_damaging(0.639) TCGA-DK-A6AW-01 2 153529498 153529498 C A PRPF40A Missense_Mutation p.R400L 0.28 deleterious(0.02) possibly_damaging(0.569) TCGA-DK-A6AW-01 2 155252578 155252578 C A GALNT13 Missense_Mutation p.S411Y 0.42 deleterious(0) benign(0.226) TCGA-DK-A6AW-01 2 15746099 15746099 A C DDX1 Missense_Mutation p.E217D 0.46 tolerated(0.87) benign(0.002) TCGA-DK-A6AW-01 2 15746297 15746297 C T DDX1 Silent p.F242F 0.40 TCGA-DK-A6AW-01 2 158634740 158634740 A C ACVR1 Missense_Mutation p.F149C 0.46 tolerated(0.25) benign(0.336) TCGA-DK-A6AW-01 2 158971738 158971738 T G UPP2 Missense_Mutation p.C159W 0.36 deleterious(0.01) probably_damaging(0.936) TCGA-DK-A6AW-01 2 159537326 159537326 T G PKP4 3'UTR 0.46 TCGA-DK-A6AW-01 2 160604859 160604859 G A MARCH7 Missense_Mutation p.R353Q 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-DK-A6AW-01 2 160964212 160964212 C T ITGB6 Missense_Mutation p.R749Q 0.49 deleterious(0) probably_damaging(0.941) TCGA-DK-A6AW-01 2 161052031 161052031 C T ITGB6 Missense_Mutation p.D148N 0.51 deleterious(0.02) probably_damaging(1) TCGA-DK-A6AW-01 2 162660965 162660965 G A SLC4A10 Missense_Mutation p.R46Q 0.39 tolerated(0.06) probably_damaging(0.99) TCGA-DK-A6AW-01 2 162891739 162891739 C T DPP4 Missense_Mutation p.E237K 0.38 deleterious(0.04) benign(0.14) TCGA-DK-A6AW-01 2 162895659 162895659 A C DPP4 Missense_Mutation p.I134M 0.47 deleterious(0) probably_damaging(0.957) TCGA-DK-A6AW-01 2 1643178 1643178 C T PXDN Silent p.G1323G 0.49 TCGA-DK-A6AW-01 2 164467261 164467261 G A FIGN Missense_Mutation p.R361W 0.42 deleterious(0) possibly_damaging(0.852) TCGA-DK-A6AW-01 2 165353986 165353986 C T GRB14 Silent p.E373E 0.40 TCGA-DK-A6AW-01 2 165765171 165765171 G A SLC38A11 Silent p.L302L 0.48 TCGA-DK-A6AW-01 2 166153631 166153631 G T SCN2A Missense_Mutation p.K124N 0.47 deleterious(0) possibly_damaging(0.848) TCGA-DK-A6AW-01 2 166535684 166535684 C T CSRNP3 Silent p.F393F 0.54 TCGA-DK-A6AW-01 2 166535733 166535733 C A CSRNP3 Missense_Mutation p.L410I 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A6AW-01 2 166613687 166613687 C T GALNT3 Missense_Mutation p.S421N 0.44 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 2 166740315 166740315 G A TTC21B Missense_Mutation p.R1225C 0.43 deleterious(0.03) benign(0.014) TCGA-DK-A6AW-01 2 166785810 166785810 C A TTC21B Missense_Mutation p.K407N 0.36 deleterious(0.02) possibly_damaging(0.821) TCGA-DK-A6AW-01 2 167055571 167055571 G A SCN9A Missense_Mutation p.R1849C 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 167083097 167083097 A C SCN9A Missense_Mutation p.F1449V 0.54 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 2 167138314 167138314 G A SCN9A Missense_Mutation p.T649M 0.40 tolerated(0.06) benign(0.172) TCGA-DK-A6AW-01 2 167140973 167140973 G A SCN9A Intron 0.35 TCGA-DK-A6AW-01 2 167262278 167262278 T C SCN7A Missense_Mutation p.K1621E 0.49 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 2 167279808 167279808 G A SCN7A Silent p.F996F 0.44 TCGA-DK-A6AW-01 2 167304200 167304200 C T SCN7A Missense_Mutation p.E437K 0.35 deleterious(0.05) benign(0.008) TCGA-DK-A6AW-01 2 16743290 16743290 G A FAM49A Nonsense_Mutation p.R140* 0.47 TCGA-DK-A6AW-01 2 16743410 16743410 C A FAM49A Splice_Site p.X100_splice 0.40 TCGA-DK-A6AW-01 2 168099788 168099788 T G XIRP2 Missense_Mutation p.L629R 0.39 probably_damaging(1) TCGA-DK-A6AW-01 2 168102025 168102025 A G XIRP2 Missense_Mutation p.T1375A 0.44 probably_damaging(0.999) TCGA-DK-A6AW-01 2 168102694 168102694 G T XIRP2 Nonsense_Mutation p.E1598* 0.51 TCGA-DK-A6AW-01 2 168104376 168104376 C T XIRP2 Silent p.S2158S 0.49 TCGA-DK-A6AW-01 2 168104739 168104739 G T XIRP2 Missense_Mutation p.E2279D 0.44 benign(0.022) TCGA-DK-A6AW-01 2 168105697 168105697 T G XIRP2 Missense_Mutation p.S2599A 0.50 benign(0.002) TCGA-DK-A6AW-01 2 168106186 168106186 C A XIRP2 Missense_Mutation p.H2762N 0.47 benign(0.001) TCGA-DK-A6AW-01 2 168107552 168107552 C A XIRP2 Missense_Mutation p.S3217Y 0.43 probably_damaging(1) TCGA-DK-A6AW-01 2 168107569 168107569 C T XIRP2 Missense_Mutation p.R3223C 0.46 probably_damaging(1) TCGA-DK-A6AW-01 2 168726367 168726367 G A B3GALT1 Missense_Mutation p.R273Q 0.43 tolerated(0.67) benign(0.021) TCGA-DK-A6AW-01 2 169626102 169626102 C T CERS6 Missense_Mutation p.A370V 0.44 tolerated(0.52) benign(0.122) TCGA-DK-A6AW-01 2 169699576 169699576 G A NOSTRIN Silent p.A193A 0.50 TCGA-DK-A6AW-01 2 169791907 169791907 C T ABCB11 Missense_Mutation p.R948H 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A6AW-01 2 169939919 169939919 G T DHRS9 Nonsense_Mutation p.E132* 0.44 TCGA-DK-A6AW-01 2 170013914 170013914 C T LRP2 Missense_Mutation p.E3996K 0.34 benign(0) TCGA-DK-A6AW-01 2 170044706 170044706 C A LRP2 Missense_Mutation p.Q3034H 0.46 benign(0.409) TCGA-DK-A6AW-01 2 170382100 170382100 A C KLHL41 Missense_Mutation p.E572A 0.46 deleterious(0.01) benign(0.081) TCGA-DK-A6AW-01 2 170393812 170393812 T G FASTKD1 Missense_Mutation p.K705Q 0.57 tolerated(0.05) probably_damaging(0.946) TCGA-DK-A6AW-01 2 170493518 170493518 C T PPIG Missense_Mutation p.R584C 0.43 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6AW-01 2 170666805 170666805 G T SSB Nonsense_Mutation p.E228* 0.32 TCGA-DK-A6AW-01 2 170871819 170871819 C T UBR3 Nonsense_Mutation p.R1466* 0.30 TCGA-DK-A6AW-01 2 171700662 171700662 C A GAD1 Missense_Mutation p.S249Y 0.45 deleterious(0.03) benign(0.05) TCGA-DK-A6AW-01 2 172306414 172306414 G T DCAF17 Nonsense_Mutation p.E162* 0.45 TCGA-DK-A6AW-01 2 172602403 172602403 C T DYNC1I2 Missense_Mutation p.S590F 0.40 deleterious(0.01) possibly_damaging(0.511) TCGA-DK-A6AW-01 2 173431637 173431637 G A PDK1 Missense_Mutation p.E249K 0.32 tolerated(0.1) benign(0.014) TCGA-DK-A6AW-01 2 174228119 174228119 G A CDCA7 Missense_Mutation p.D184N 0.50 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 2 174774973 174774973 A C SP3 Missense_Mutation p.F681C 0.53 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 2 174820115 174820115 C T SP3 Silent p.S375S 0.50 TCGA-DK-A6AW-01 2 175269045 175269045 T C SCRN3 Splice_Site p.X252_splice 0.62 TCGA-DK-A6AW-01 2 175330579 175330579 A C GPR155 Missense_Mutation p.F440V 0.32 tolerated(0.49) benign(0.009) TCGA-DK-A6AW-01 2 175337820 175337820 G T GPR155 Missense_Mutation p.L245I 0.44 tolerated(0.19) possibly_damaging(0.557) TCGA-DK-A6AW-01 2 175338026 175338026 G T GPR155 Missense_Mutation p.S176Y 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 175618307 175618307 G T CHRNA1 Missense_Mutation p.F259L 0.52 tolerated(0.05) benign(0.034) TCGA-DK-A6AW-01 2 176947097 176947097 C A EVX2 Nonsense_Mutation p.G170* 0.49 TCGA-DK-A6AW-01 2 176973703 176973703 G A HOXD11 Missense_Mutation p.E284K 0.06 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 17698113 17698113 T C RAD51AP2 Missense_Mutation p.K524E 0.54 tolerated(0.31) benign(0.002) TCGA-DK-A6AW-01 2 178299082 178299082 A C AGPS Silent p.P126P 0.44 TCGA-DK-A6AW-01 2 178415474 178415474 A C TTC30B 3'UTR 0.11 TCGA-DK-A6AW-01 2 17906559 17906559 C A SMC6 Nonsense_Mutation p.E231* 0.25 TCGA-DK-A6AW-01 2 179320861 179320861 C T DFNB59 Nonsense_Mutation p.R178* 0.33 TCGA-DK-A6AW-01 2 179396493 179396493 G A TTN Missense_Mutation p.S34950L 0.53 TCGA-DK-A6AW-01 2 179397771 179397771 C T TTN Missense_Mutation p.R34524K 0.38 TCGA-DK-A6AW-01 2 179397883 179397883 G T TTN Missense_Mutation p.L34487I 0.42 TCGA-DK-A6AW-01 2 179403519 179403519 C A TTN Missense_Mutation p.D33013Y 0.34 TCGA-DK-A6AW-01 2 179411907 179411907 C T TTN Missense_Mutation p.E31449K 0.44 TCGA-DK-A6AW-01 2 179419844 179419844 C A TTN Nonsense_Mutation p.E29448* 0.41 TCGA-DK-A6AW-01 2 179421585 179421585 G A TTN Silent p.I29432I 0.55 TCGA-DK-A6AW-01 2 179428913 179428913 G A TTN Missense_Mutation p.L27316F 0.39 TCGA-DK-A6AW-01 2 179435390 179435390 G A TTN Nonsense_Mutation p.R25157* 0.60 TCGA-DK-A6AW-01 2 179436728 179436728 C A TTN Missense_Mutation p.D24711Y 0.50 TCGA-DK-A6AW-01 2 179452817 179452817 T G TTN Missense_Mutation p.K21106T 0.57 TCGA-DK-A6AW-01 2 179458949 179458949 C T TTN Missense_Mutation p.D19391N 0.48 TCGA-DK-A6AW-01 2 179481540 179481540 C T TTN Missense_Mutation p.E16026K 0.43 TCGA-DK-A6AW-01 2 179537394 179537394 G T TTN Missense_Mutation p.P11608H 0.32 TCGA-DK-A6AW-01 2 179549099 179549099 G T TTN Missense_Mutation p.L10894I 0.37 TCGA-DK-A6AW-01 2 179558367 179558367 G A TTN Silent p.A10521A 0.22 TCGA-DK-A6AW-01 2 179577574 179577574 C A TTN Missense_Mutation p.V9060L 0.40 TCGA-DK-A6AW-01 2 179577934 179577934 A T TTN Missense_Mutation p.L8976Q 0.39 TCGA-DK-A6AW-01 2 179579264 179579264 G T TTN Missense_Mutation p.S8746Y 0.40 TCGA-DK-A6AW-01 2 179591848 179591848 G A TTN Silent p.S6748S 0.41 TCGA-DK-A6AW-01 2 17959299 17959299 T C GEN1 Silent p.V411V 0.39 TCGA-DK-A6AW-01 2 179593506 179593506 C A TTN Splice_Site p.X6383_splice 0.41 TCGA-DK-A6AW-01 2 179593771 179593771 G T TTN Missense_Mutation p.L6332I 0.35 TCGA-DK-A6AW-01 2 179595459 179595459 G T TTN Missense_Mutation p.S5934Y 0.39 TCGA-DK-A6AW-01 2 179612972 179612972 G T TTN Intron 0.54 TCGA-DK-A6AW-01 2 179613710 179613710 G T TTN Intron 0.50 TCGA-DK-A6AW-01 2 179656915 179656915 C A TTN Nonsense_Mutation p.E516* 0.42 TCGA-DK-A6AW-01 2 179702131 179702131 A G CCDC141 Missense_Mutation p.F1272S 0.47 tolerated(0.15) benign(0.119) TCGA-DK-A6AW-01 2 179733999 179733999 C A CCDC141 Nonsense_Mutation p.E747* 0.45 TCGA-DK-A6AW-01 2 179989197 179989197 G T SESTD1 Nonsense_Mutation p.S354* 0.48 TCGA-DK-A6AW-01 2 180809788 180809788 C T CWC22 3'UTR 0.50 TCGA-DK-A6AW-01 2 182399085 182399085 G T ITGA4 Missense_Mutation p.E957D 0.42 tolerated(0.33) benign(0.002) TCGA-DK-A6AW-01 2 182400316 182400316 G T ITGA4 3'UTR 0.48 TCGA-DK-A6AW-01 2 183066204 183066204 G A PDE1A Missense_Mutation p.R379W 0.46 deleterious(0) probably_damaging(0.961) TCGA-DK-A6AW-01 2 183094855 183094855 T C PDE1A Missense_Mutation p.I201V 0.58 tolerated(0.78) benign(0.02) TCGA-DK-A6AW-01 2 183291420 183291420 G A PDE1A Intron 0.47 TCGA-DK-A6AW-01 2 183826988 183826988 G A NCKAP1 Missense_Mutation p.R600C 0.54 tolerated(0.07) benign(0.013) TCGA-DK-A6AW-01 2 185801897 185801897 A G ZNF804A Missense_Mutation p.K592E 0.45 deleterious(0) probably_damaging(0.956) TCGA-DK-A6AW-01 2 186670982 186670982 G A FSIP2 Missense_Mutation p.R5739Q 0.45 benign(0) TCGA-DK-A6AW-01 2 186671136 186671136 G A FSIP2 Silent p.S5790S 0.42 TCGA-DK-A6AW-01 2 186671361 186671361 A C FSIP2 Missense_Mutation p.E5865D 0.52 benign(0.062) TCGA-DK-A6AW-01 2 186698018 186698018 G A FSIP2 3'Flank 0.27 TCGA-DK-A6AW-01 2 187500864 187500864 T G ITGAV Silent p.V229V 0.21 TCGA-DK-A6AW-01 2 187626438 187626438 C T FAM171B Missense_Mutation p.R457W 0.17 deleterious(0.02) benign(0.058) TCGA-DK-A6AW-01 2 187693289 187693289 G A ZSWIM2 Missense_Mutation p.P442S 0.23 tolerated(0.15) benign(0.305) TCGA-DK-A6AW-01 2 187713800 187713800 T C ZSWIM2 Missense_Mutation p.S20G 0.19 tolerated(0.07) benign(0.193) TCGA-DK-A6AW-01 2 189864098 189864098 G A COL3A1 Missense_Mutation p.E704K 0.21 unknown(0) TCGA-DK-A6AW-01 2 189963478 189963478 C T COL5A2 Missense_Mutation p.G126D 0.16 probably_damaging(0.999) TCGA-DK-A6AW-01 2 190430214 190430214 G A SLC40A1 Missense_Mutation p.S209L 0.68 tolerated(0.15) benign(0.148) TCGA-DK-A6AW-01 2 190611118 190611118 G A ANKAR Missense_Mutation p.R1357Q 0.21 tolerated_low_confidence(0.12) benign(0.007) TCGA-DK-A6AW-01 2 190611396 190611396 A C OSGEPL1 3'UTR 0.40 TCGA-DK-A6AW-01 2 190922324 190922324 C T MSTN Missense_Mutation p.R263K 0.18 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 2 190925046 190925046 G A MSTN Silent p.V163V 0.72 TCGA-DK-A6AW-01 2 191362227 191362227 G A MFSD6 Missense_Mutation p.D652N 0.75 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-DK-A6AW-01 2 192288604 192288604 T G MYO1B Missense_Mutation p.F1110C 0.78 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A6AW-01 2 192550587 192550587 T C NABP1 3'UTR 0.64 TCGA-DK-A6AW-01 2 192863836 192863836 G A TMEFF2 Missense_Mutation p.S212L 0.85 deleterious(0.03) possibly_damaging(0.68) TCGA-DK-A6AW-01 2 196602630 196602630 A C DNAH7 3'UTR 0.76 TCGA-DK-A6AW-01 2 196728932 196728932 G A DNAH7 Missense_Mutation p.R2483W 0.81 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 196749323 196749323 G T DNAH7 Missense_Mutation p.Q1917K 0.92 tolerated(0.29) benign(0) TCGA-DK-A6AW-01 2 196749455 196749455 G T DNAH7 Missense_Mutation p.L1873I 0.83 tolerated(0.16) benign(0.005) TCGA-DK-A6AW-01 2 196837029 196837029 T G DNAH7 Missense_Mutation p.E665D 0.79 tolerated(0.76) benign(0.003) TCGA-DK-A6AW-01 2 197086962 197086962 G T HECW2 Missense_Mutation p.F1373L 0.88 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 197106879 197106879 G A HECW2 Silent p.F1193F 0.87 TCGA-DK-A6AW-01 2 1983498 1983498 G A MYT1L Nonsense_Mutation p.R18* 0.56 TCGA-DK-A6AW-01 2 198508985 198508985 G A RFTN2 Missense_Mutation p.S112L 0.96 tolerated(0.22) benign(0.01) TCGA-DK-A6AW-01 2 200245206 200245206 A G SATB2 Missense_Mutation p.S160P 0.91 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 2 20132192 20132192 T G WDR35 Missense_Mutation p.E903A 0.40 tolerated(0.18) probably_damaging(0.991) TCGA-DK-A6AW-01 2 201434523 201434523 C T SGOL2 Missense_Mutation p.S204L 0.75 tolerated(1) benign(0) TCGA-DK-A6AW-01 2 201437032 201437032 G T SGOL2 Nonsense_Mutation p.E655* 0.83 TCGA-DK-A6AW-01 2 201502954 201502954 C T AOX1 Missense_Mutation p.R833C 0.87 deleterious(0.01) probably_damaging(0.973) TCGA-DK-A6AW-01 2 202131261 202131261 G T CASP8 Missense_Mutation p.D77Y 0.83 deleterious(0) possibly_damaging(0.804) TCGA-DK-A6AW-01 2 203847098 203847098 C A CARF Missense_Mutation p.H665N 0.87 tolerated_low_confidence(0.26) benign(0.006) TCGA-DK-A6AW-01 2 207162008 207162008 G A ZDBF2 Silent p.Q33Q 0.94 TCGA-DK-A6AW-01 2 207170663 207170663 G T ZDBF2 Nonsense_Mutation p.E471* 0.83 TCGA-DK-A6AW-01 2 207172181 207172181 G T ZDBF2 Nonsense_Mutation p.E977* 0.77 TCGA-DK-A6AW-01 2 207173927 207173927 G T ZDBF2 Missense_Mutation p.D1559Y 0.90 deleterious(0.01) possibly_damaging(0.861) TCGA-DK-A6AW-01 2 207176350 207176350 T G ZDBF2 3'UTR 0.93 TCGA-DK-A6AW-01 2 207310144 207310144 G T ADAM23 Nonsense_Mutation p.E110* 0.87 TCGA-DK-A6AW-01 2 207615672 207615672 G T MDH1B Missense_Mutation p.N346K 0.82 tolerated(0.45) benign(0.004) TCGA-DK-A6AW-01 2 20886585 20886585 A C C2orf43 3'UTR 0.54 TCGA-DK-A6AW-01 2 209324642 209324642 G T PTH2R Missense_Mutation p.D313Y 0.77 tolerated(0.06) possibly_damaging(0.9) TCGA-DK-A6AW-01 2 20939769 20939769 T G C2orf43 Missense_Mutation p.E222A 0.46 tolerated(0.51) benign(0.439) TCGA-DK-A6AW-01 2 210558473 210558473 T G MAP2 Missense_Mutation p.L527V 0.96 tolerated_low_confidence(0.48) benign(0.019) TCGA-DK-A6AW-01 2 21230201 21230201 T C APOB Missense_Mutation p.N3180S 0.45 possibly_damaging(0.791) TCGA-DK-A6AW-01 2 214204952 214204952 G A SPAG16 Missense_Mutation p.R201Q 0.91 deleterious(0.01) benign(0.371) TCGA-DK-A6AW-01 2 214239745 214239745 C T SPAG16 Missense_Mutation p.R282C 0.91 tolerated(0.11) benign(0) TCGA-DK-A6AW-01 2 215275025 215275025 C T SPAG16 Nonsense_Mutation p.R628* 0.90 TCGA-DK-A6AW-01 2 215657050 215657050 C T BARD1 Missense_Mutation p.R112Q 0.86 tolerated(0.27) benign(0.06) TCGA-DK-A6AW-01 2 215866294 215866294 C T ABCA12 Missense_Mutation p.E951K 0.82 tolerated(0.09) benign(0.392) TCGA-DK-A6AW-01 2 215890456 215890456 G T ABCA12 Missense_Mutation p.L410I 0.80 tolerated(0.13) benign(0.345) TCGA-DK-A6AW-01 2 219825237 219825237 C A CDK5R2 Missense_Mutation p.T232K 0.82 deleterious(0) possibly_damaging(0.863) TCGA-DK-A6AW-01 2 219892675 219892675 G T CCDC108 Missense_Mutation p.F636L 0.76 deleterious(0.01) benign(0.036) TCGA-DK-A6AW-01 2 220089866 220089866 A G ATG9A Missense_Mutation p.I148T 0.92 deleterious(0) benign(0.126) TCGA-DK-A6AW-01 2 225422513 225422513 C T CUL3 Missense_Mutation p.E43K 0.85 deleterious(0.01) possibly_damaging(0.517) TCGA-DK-A6AW-01 2 225738788 225738788 G T DOCK10 Silent p.I394I 0.88 TCGA-DK-A6AW-01 2 225739029 225739029 C T DOCK10 Missense_Mutation p.R352Q 0.95 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 2 228113210 228113210 G A COL4A3 Missense_Mutation p.G174R 0.82 probably_damaging(1) TCGA-DK-A6AW-01 2 228881350 228881350 G A SPHKAP Missense_Mutation p.S1407L 0.89 tolerated(0.1) benign(0.008) TCGA-DK-A6AW-01 2 230902146 230902146 G A SLC16A14 Nonsense_Mutation p.R495* 0.95 TCGA-DK-A6AW-01 2 231120208 231120208 C T SP140 Missense_Mutation p.R401C 0.79 tolerated(0.05) benign(0.255) TCGA-DK-A6AW-01 2 233244361 233244361 G A ALPP Missense_Mutation p.E150K 0.63 tolerated(0.08) probably_damaging(0.958) TCGA-DK-A6AW-01 2 233394689 233394689 C A CHRND Silent p.V220V 0.93 TCGA-DK-A6AW-01 2 234173758 234173758 C T ATG16L1 Missense_Mutation p.R204W 0.88 deleterious(0.03) benign(0.04) TCGA-DK-A6AW-01 2 234363465 234363465 C T DGKD Missense_Mutation p.A774V 0.88 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 234526745 234526758 GAAAATTAGTAGAA - UGT1A8 Frame_Shift_Del p.R131Lfs*8 0.80 TCGA-DK-A6AW-01 2 234774885 234774885 G T MSL3P1 RNA 0.86 TCGA-DK-A6AW-01 2 238285978 238285978 C T COL6A3 Missense_Mutation p.R836Q 0.93 benign(0.044) TCGA-DK-A6AW-01 2 242039273 242039273 C T MTERFD2 Missense_Mutation p.A20T 0.95 tolerated(0.2) benign(0.017) TCGA-DK-A6AW-01 2 24246002 24246002 G A MFSD2B Silent p.A354A 0.49 TCGA-DK-A6AW-01 2 242756143 242756143 A C NEU4 Missense_Mutation p.N99H 0.86 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 2 242793369 242793369 C T PDCD1 Silent p.E236E 0.91 TCGA-DK-A6AW-01 2 24952620 24952620 G A NCOA1 Missense_Mutation p.R1046K 0.32 deleterious(0.03) benign(0.341) TCGA-DK-A6AW-01 2 25037316 25037316 G A CENPO Silent p.E96E 0.51 TCGA-DK-A6AW-01 2 25047380 25047380 A C ADCY3 Missense_Mutation p.F868C 0.33 deleterious(0) possibly_damaging(0.908) TCGA-DK-A6AW-01 2 25457218 25457218 C T DNMT3A Missense_Mutation p.G890D 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 25982510 25982510 T G ASXL2 Missense_Mutation p.Q260H 0.45 tolerated(0.14) possibly_damaging(0.888) TCGA-DK-A6AW-01 2 26647295 26647295 G T DRC1 Missense_Mutation p.K171N 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 26676223 26676223 G A DRC1 Silent p.A575A 0.24 TCGA-DK-A6AW-01 2 26679519 26679519 G A DRC1 3'UTR 0.30 TCGA-DK-A6AW-01 2 26703155 26703155 A C OTOF Missense_Mutation p.F610V 0.44 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 2 27259972 27259972 C T TMEM214 Silent p.F312F 0.39 TCGA-DK-A6AW-01 2 27279541 27279541 C T AGBL5 Silent p.F472F 0.49 TCGA-DK-A6AW-01 2 27291605 27291605 G A AGBL5 Missense_Mutation p.R783Q 0.50 tolerated_low_confidence(0.08) benign(0.009) TCGA-DK-A6AW-01 2 27327245 27327245 A G CGREF1 Intron 0.29 TCGA-DK-A6AW-01 2 27327261 27327261 G T CGREF1 Intron 0.15 TCGA-DK-A6AW-01 2 27589748 27589748 G A EIF2B4 Missense_Mutation p.R377W 0.43 deleterious(0) probably_damaging(0.975) TCGA-DK-A6AW-01 2 27800309 27800309 C A C2orf16 Missense_Mutation p.F290L 0.54 tolerated(0.22) benign(0.382) TCGA-DK-A6AW-01 2 27800902 27800902 C T C2orf16 Missense_Mutation p.S488F 0.54 tolerated(0.11) possibly_damaging(0.769) TCGA-DK-A6AW-01 2 27883963 27883963 G A SUPT7L Missense_Mutation p.P103S 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A6AW-01 2 28004416 28004416 A G RBKS 3'UTR 0.48 TCGA-DK-A6AW-01 2 29022141 29022141 G A PPP1CB Missense_Mutation p.R319Q 0.32 deleterious_low_confidence(0.01) benign(0.006) TCGA-DK-A6AW-01 2 29074092 29074092 G A TRMT61B Silent p.S386S 0.33 TCGA-DK-A6AW-01 2 29084014 29084014 G A TRMT61B Silent p.T321T 0.36 TCGA-DK-A6AW-01 2 29092607 29092607 G T TRMT61B Silent p.L179L 0.43 TCGA-DK-A6AW-01 2 29297043 29297043 G A C2orf71 Missense_Mutation p.R29W 0.48 deleterious(0) possibly_damaging(0.784) TCGA-DK-A6AW-01 2 29379282 29379282 G T CLIP4 Nonsense_Mutation p.E410* 0.47 TCGA-DK-A6AW-01 2 30954218 30954218 C A CAPN13 Nonsense_Mutation p.E659* 0.44 TCGA-DK-A6AW-01 2 30976040 30976040 C A CAPN13 Missense_Mutation p.Q322H 0.55 deleterious(0.01) possibly_damaging(0.611) TCGA-DK-A6AW-01 2 30987153 30987153 C T CAPN13 Missense_Mutation p.D182N 0.37 tolerated(1) benign(0.004) TCGA-DK-A6AW-01 2 32145876 32145876 C A MEMO1 Missense_Mutation p.D106Y 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 32724730 32724730 C T BIRC6 Missense_Mutation p.S2862L 0.50 probably_damaging(0.984) TCGA-DK-A6AW-01 2 32750012 32750012 A C BIRC6 Missense_Mutation p.K3894T 0.64 possibly_damaging(0.837) TCGA-DK-A6AW-01 2 33745024 33745024 G A RASGRP3 Missense_Mutation p.R60Q 0.62 tolerated(0.85) benign(0.005) TCGA-DK-A6AW-01 2 37041349 37041349 G A VIT Missense_Mutation p.V643I 0.42 tolerated(0.72) benign(0.032) TCGA-DK-A6AW-01 2 37235831 37235831 C T HEATR5B Missense_Mutation p.R1482H 0.48 deleterious(0.04) benign(0.021) TCGA-DK-A6AW-01 2 37276967 37276967 C A HEATR5B Missense_Mutation p.S842I 0.48 deleterious(0.04) possibly_damaging(0.476) TCGA-DK-A6AW-01 2 37302754 37302754 T G HEATR5B Missense_Mutation p.L157F 0.51 deleterious(0) possibly_damaging(0.885) TCGA-DK-A6AW-01 2 37487391 37487391 C T PRKD3 Missense_Mutation p.R674Q 0.45 deleterious(0) probably_damaging(0.96) TCGA-DK-A6AW-01 2 37543455 37543455 C A PRKD3 Missense_Mutation p.E71D 0.45 tolerated(0.3) benign(0.272) TCGA-DK-A6AW-01 2 39499646 39499646 T A MAP4K3 Missense_Mutation p.N611I 0.40 deleterious(0) possibly_damaging(0.688) TCGA-DK-A6AW-01 2 39964012 39964012 C T THUMPD2 Missense_Mutation p.E459K 0.38 tolerated(0.43) benign(0.005) TCGA-DK-A6AW-01 2 42488301 42488301 G T EML4 Nonsense_Mutation p.E127* 0.38 TCGA-DK-A6AW-01 2 44176792 44176792 C A LRPPRC Nonsense_Mutation p.E562* 0.51 TCGA-DK-A6AW-01 2 45600 45600 C T FAM110C Silent p.R262R 0.61 TCGA-DK-A6AW-01 2 47641447 47641447 G T MSH2 Nonsense_Mutation p.E278* 0.56 TCGA-DK-A6AW-01 2 48035078 48035078 G A FBXO11 3'UTR 0.53 TCGA-DK-A6AW-01 2 48035540 48035540 C T FBXO11 Missense_Mutation p.R861Q 0.49 deleterious(0.01) benign(0.031) TCGA-DK-A6AW-01 2 48602411 48602411 C A FOXN2 Silent p.I375I 0.45 TCGA-DK-A6AW-01 2 48818842 48818842 C A STON1-GTF2A1L Missense_Mutation p.Q661K 0.42 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A6AW-01 2 49381547 49381547 G A FSHR Missense_Mutation p.L4F 0.33 tolerated(0.1) benign(0.354) TCGA-DK-A6AW-01 2 50779931 50779931 A C NRXN1 Nonsense_Mutation p.L558* 0.47 TCGA-DK-A6AW-01 2 51253543 51253543 G T NRXN1 Nonsense_Mutation p.Y279* 0.55 TCGA-DK-A6AW-01 2 53999078 53999078 C T CHAC2 Missense_Mutation p.A57V 0.42 tolerated(0.06) benign(0.017) TCGA-DK-A6AW-01 2 54036356 54036356 C T ERLEC1 Silent p.V349V 0.38 TCGA-DK-A6AW-01 2 54826327 54826327 C T SPTBN1 Nonsense_Mutation p.R83* 0.41 TCGA-DK-A6AW-01 2 54880910 54880910 C T SPTBN1 Silent p.F1914F 0.42 TCGA-DK-A6AW-01 2 55561464 55561464 C A CCDC88A Missense_Mutation p.K831N 0.39 deleterious(0.04) probably_damaging(0.99) TCGA-DK-A6AW-01 2 61272941 61272941 G T PEX13 Nonsense_Mutation p.E290* 0.43 TCGA-DK-A6AW-01 2 61315524 61315524 G T KIAA1841 Nonsense_Mutation p.E337* 0.26 TCGA-DK-A6AW-01 2 61515822 61515822 C T USP34 Missense_Mutation p.R1580Q 0.52 tolerated(0.25) benign(0.099) TCGA-DK-A6AW-01 2 61715381 61715381 C T XPO1 Silent p.L744L 0.45 TCGA-DK-A6AW-01 2 62067162 62067162 T G FAM161A Missense_Mutation p.K326T 0.19 tolerated(0.13) benign(0.06) TCGA-DK-A6AW-01 2 63091923 63091923 G A EHBP1 Missense_Mutation p.S307N 0.46 tolerated(0.21) benign(0.005) TCGA-DK-A6AW-01 2 63282880 63282880 C T OTX1 Missense_Mutation p.A165V 0.44 tolerated(0.9) unknown(0) TCGA-DK-A6AW-01 2 69098362 69098362 G T BMP10 Missense_Mutation p.F43L 0.42 tolerated(0.63) benign(0.01) TCGA-DK-A6AW-01 2 70088446 70088446 C T GMCL1 Missense_Mutation p.A370V 0.43 deleterious(0.03) benign(0.104) TCGA-DK-A6AW-01 2 70904961 70904961 G A ADD2 Missense_Mutation p.R478C 0.48 tolerated(0.18) probably_damaging(0.911) TCGA-DK-A6AW-01 2 71014816 71014816 G T FIGLA Missense_Mutation p.L117I 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 2 71061000 71061000 C T CD207 Silent p.E114E 0.30 TCGA-DK-A6AW-01 2 71148245 71148245 C T VAX2 Missense_Mutation p.R89W 0.54 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 71576005 71576005 T G ZNF638 5'UTR 0.42 TCGA-DK-A6AW-01 2 71577349 71577349 G T ZNF638 Missense_Mutation p.R422I 0.45 deleterious(0) possibly_damaging(0.825) TCGA-DK-A6AW-01 2 71597022 71597022 G T ZNF638 Nonsense_Mutation p.E718* 0.37 TCGA-DK-A6AW-01 2 71795122 71795122 G T DYSF Missense_Mutation p.Q869H 0.45 deleterious(0) possibly_damaging(0.792) TCGA-DK-A6AW-01 2 74040881 74040881 C T C2orf78 Silent p.G125G 0.54 TCGA-DK-A6AW-01 2 74136221 74136221 G A ACTG2 Missense_Mutation p.A136T 0.46 deleterious_low_confidence(0.04) possibly_damaging(0.462) TCGA-DK-A6AW-01 2 74466549 74466549 C T SLC4A5 Silent p.A744A 0.43 TCGA-DK-A6AW-01 2 74600064 74600064 C T DCTN1 Silent p.R148R 0.50 TCGA-DK-A6AW-01 2 74654713 74654713 G A RTKN Nonsense_Mutation p.R365* 0.43 TCGA-DK-A6AW-01 2 74657613 74657613 C A RTKN Nonsense_Mutation p.E136* 0.38 TCGA-DK-A6AW-01 2 79255352 79255352 G T REG3G Missense_Mutation p.D160Y 0.30 deleterious(0.02) possibly_damaging(0.673) TCGA-DK-A6AW-01 2 79348032 79348032 G A REG1A Missense_Mutation p.M15I 0.40 deleterious(0.04) benign(0.019) TCGA-DK-A6AW-01 2 79384269 79384269 C A REG3A 3'UTR 0.43 TCGA-DK-A6AW-01 2 80101323 80101323 C T CTNNA2 Missense_Mutation p.T236M 0.43 tolerated(0.1) possibly_damaging(0.52) TCGA-DK-A6AW-01 2 80620374 80620374 G A CTNNA2 Silent p.A365A 0.33 TCGA-DK-A6AW-01 2 80772162 80772162 G A CTNNA2 Missense_Mutation p.R449Q 0.54 tolerated(0.31) benign(0.046) TCGA-DK-A6AW-01 2 80773045 80773045 C T CTNNA2 Missense_Mutation p.A466V 0.58 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 2 80831217 80831217 A C CTNNA2 Missense_Mutation p.K736N 0.50 deleterious(0) probably_damaging(0.979) TCGA-DK-A6AW-01 2 84517940 84517940 G A FUNDC2P2 RNA 0.43 TCGA-DK-A6AW-01 2 85576626 85576626 C T RETSAT Missense_Mutation p.R293Q 0.42 tolerated(0.06) benign(0.109) TCGA-DK-A6AW-01 2 85777709 85777709 A C GGCX Missense_Mutation p.L685V 0.39 tolerated(0.34) benign(0.001) TCGA-DK-A6AW-01 2 85778163 85778163 C T GGCX Silent p.T591T 0.46 TCGA-DK-A6AW-01 2 85892761 85892761 C T SFTPB Missense_Mutation p.A196T 0.47 tolerated(0.2) benign(0.032) TCGA-DK-A6AW-01 2 86992307 86992307 C A RMND5A Missense_Mutation p.H227N 0.28 deleterious(0.01) possibly_damaging(0.516) TCGA-DK-A6AW-01 2 88424039 88424039 C T FABP1 Missense_Mutation p.E103K 0.51 deleterious(0) probably_damaging(0.981) TCGA-DK-A6AW-01 2 88874524 88874524 C T EIF2AK3 Missense_Mutation p.R826Q 0.51 tolerated(0.69) benign(0.004) TCGA-DK-A6AW-01 2 88885439 88885439 C A EIF2AK3 Nonsense_Mutation p.E524* 0.57 TCGA-DK-A6AW-01 2 89111094 89111094 G T MIR4436A 5'Flank 0.38 TCGA-DK-A6AW-01 2 89442621 89442621 C A IGKV3-20 5'UTR 0.43 TCGA-DK-A6AW-01 2 89476049 89476049 G T IGKV2-24 Silent p.I41I 0.38 TCGA-DK-A6AW-01 2 9098719 9098719 C T MBOAT2 Missense_Mutation p.R43Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 2 9484673 9484673 C T ASAP2 Missense_Mutation p.R288C 0.50 deleterious(0.02) possibly_damaging(0.847) TCGA-DK-A6AW-01 2 9568931 9568931 C A CPSF3 Missense_Mutation p.L30I 0.50 tolerated(0.32) benign(0.416) TCGA-DK-A6AW-01 2 95847968 95847968 C T ZNF2 3'UTR 0.55 TCGA-DK-A6AW-01 2 9613216 9613216 C T CPSF3 3'UTR 0.40 TCGA-DK-A6AW-01 2 96260853 96260853 G T TRIM43 Missense_Mutation p.R156I 0.29 deleterious(0.03) possibly_damaging(0.668) TCGA-DK-A6AW-01 2 96479836 96479836 T G LINC00342 RNA 0.43 TCGA-DK-A6AW-01 2 96953685 96953685 G A SNRNP200 Missense_Mutation p.A1094V 0.43 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 2 96964670 96964670 C A SNRNP200 Missense_Mutation p.K255N 0.44 tolerated(0.34) benign(0.002) TCGA-DK-A6AW-01 2 96992559 96992559 C T ITPRIPL1 Nonsense_Mutation p.R72* 0.51 TCGA-DK-A6AW-01 2 97365718 97365718 G A FER1L5 RNA 0.45 TCGA-DK-A6AW-01 2 97373496 97373496 G A LMAN2L Nonsense_Mutation p.R298* 0.43 TCGA-DK-A6AW-01 2 97531611 97531611 T C SEMA4C Missense_Mutation p.N105S 0.34 tolerated(0.6) benign(0.015) TCGA-DK-A6AW-01 2 97911336 97911336 C A ANKRD36 Missense_Mutation p.S1671Y 0.16 tolerated(0.25) benign(0.076) TCGA-DK-A6AW-01 2 97911431 97911432 - A ANKRD36 Frame_Shift_Ins p.A1705Gfs*5 0.23 TCGA-DK-A6AW-01 2 99013312 99013312 C T CNGA3 Missense_Mutation p.S560L 0.40 deleterious(0.01) benign(0.065) TCGA-DK-A6AW-01 2 99013469 99013469 C T CNGA3 Silent p.I612I 0.35 TCGA-DK-A6AW-01 2 99725299 99725299 T A TSGA10 Missense_Mutation p.E69D 0.37 tolerated(0.18) benign(0.01) TCGA-DK-A6AW-01 3 100096563 100096563 C A TOMM70A Nonsense_Mutation p.E360* 0.37 TCGA-DK-A6AW-01 3 10015338 10015338 G A EMC3 Silent p.I156I 0.36 TCGA-DK-A6AW-01 3 100295903 100295903 T G TMEM45A 3'UTR 0.39 TCGA-DK-A6AW-01 3 100432575 100432575 C T TFG Nonsense_Mutation p.Q16* 0.46 TCGA-DK-A6AW-01 3 10065384 10065384 A C FANCD2 5'Flank 0.50 TCGA-DK-A6AW-01 3 101086821 101086821 G A SENP7 Silent p.L277L 0.49 TCGA-DK-A6AW-01 3 101390034 101390034 G A ZBTB11 Nonsense_Mutation p.R240* 0.42 TCGA-DK-A6AW-01 3 101451331 101451331 G T CEP97 Splice_Site p.X188_splice 0.53 TCGA-DK-A6AW-01 3 101483786 101483786 G A CEP97 Silent p.S663S 0.35 TCGA-DK-A6AW-01 3 101483873 101483873 G T CEP97 Missense_Mutation p.E692D 0.45 tolerated(0.08) benign(0.018) TCGA-DK-A6AW-01 3 101571981 101571981 A T NFKBIZ Missense_Mutation p.H204L 0.50 deleterious_low_confidence(0.03) benign(0.002) TCGA-DK-A6AW-01 3 102171937 102171937 T G ZPLD1 Missense_Mutation p.F110C 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 3 10354352 10354352 G A SEC13 Missense_Mutation p.S76L 0.44 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 3 107097212 107097212 A G CCDC54 Missense_Mutation p.T260A 0.49 deleterious(0.05) benign(0.025) TCGA-DK-A6AW-01 3 107779599 107779599 G A CD47 Silent p.F197F 0.46 TCGA-DK-A6AW-01 3 108100382 108100382 G A MYH15 3'UTR 0.47 TCGA-DK-A6AW-01 3 108188918 108188918 A C MYH15 Missense_Mutation p.L529V 0.44 deleterious(0.02) benign(0.071) TCGA-DK-A6AW-01 3 108363112 108363112 G A DZIP3 Missense_Mutation p.A415T 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-DK-A6AW-01 3 108541670 108541670 T G TRAT1 5'UTR 0.58 TCGA-DK-A6AW-01 3 111602889 111602889 T G PHLDB2 Intron 0.52 TCGA-DK-A6AW-01 3 111700745 111700745 C A ABHD10 Missense_Mutation p.S86Y 0.42 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 3 112185123 112185123 G T BTLA Missense_Mutation p.F234L 0.36 tolerated(0.18) benign(0.012) TCGA-DK-A6AW-01 3 112324510 112324510 G A CCDC80 Silent p.V869V 0.39 TCGA-DK-A6AW-01 3 112356979 112356979 C A CCDC80 Nonsense_Mutation p.E592* 0.46 TCGA-DK-A6AW-01 3 112358410 112358410 G A CCDC80 Missense_Mutation p.R115C 0.38 deleterious_low_confidence(0) benign(0.136) TCGA-DK-A6AW-01 3 113003209 113003209 G A BOC Missense_Mutation p.R894Q 0.48 tolerated(0.29) benign(0.002) TCGA-DK-A6AW-01 3 113380267 113380267 C A KIAA2018 Nonsense_Mutation p.E88* 0.51 TCGA-DK-A6AW-01 3 113658779 113658779 T C GRAMD1C Missense_Mutation p.S580P 0.51 tolerated(0.13) probably_damaging(0.982) TCGA-DK-A6AW-01 3 113672612 113672612 G A ZDHHC23 Missense_Mutation p.R76H 0.50 deleterious(0.03) probably_damaging(0.985) TCGA-DK-A6AW-01 3 118865408 118865408 T C C3orf30 Silent p.N124N 0.44 TCGA-DK-A6AW-01 3 119911853 119911853 C T GPR156 Missense_Mutation p.G136D 0.63 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 120424908 120424908 G A RABL3 Missense_Mutation p.R108C 0.39 deleterious(0.05) probably_damaging(0.971) TCGA-DK-A6AW-01 3 120489640 120489640 G T GTF2E1 Missense_Mutation p.D172Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 3 120871392 120871392 A C STXBP5L Missense_Mutation p.R246S 0.49 deleterious(0.03) possibly_damaging(0.864) TCGA-DK-A6AW-01 3 120941851 120941851 G A STXBP5L Missense_Mutation p.E320K 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 3 121001120 121001120 T G STXBP5L Missense_Mutation p.F706L 0.50 tolerated(0.52) benign(0.009) TCGA-DK-A6AW-01 3 121132110 121132110 C T STXBP5L Silent p.L1042L 0.35 TCGA-DK-A6AW-01 3 121192275 121192275 C A POLQ Missense_Mutation p.K2155N 0.48 deleterious(0) probably_damaging(0.952) TCGA-DK-A6AW-01 3 121353155 121353155 G A HCLS1 Nonsense_Mutation p.R268* 0.46 TCGA-DK-A6AW-01 3 121413936 121413936 T C GOLGB1 Missense_Mutation p.T1812A 0.50 benign(0.012) TCGA-DK-A6AW-01 3 121414329 121414329 C A GOLGB1 Nonsense_Mutation p.E1681* 0.48 TCGA-DK-A6AW-01 3 121527807 121527807 G T IQCB1 Missense_Mutation p.S148Y 0.48 deleterious(0) probably_damaging(0.979) TCGA-DK-A6AW-01 3 121643813 121643813 C A SLC15A2 Missense_Mutation p.L353I 0.40 tolerated(0.18) possibly_damaging(0.492) TCGA-DK-A6AW-01 3 122437243 122437243 G T PARP14 Missense_Mutation p.K1415N 0.44 deleterious(0.01) benign(0.083) TCGA-DK-A6AW-01 3 123019096 123019096 A C ADCY5 Missense_Mutation p.F924C 0.51 deleterious(0) probably_damaging(0.957) TCGA-DK-A6AW-01 3 123699380 123699380 C T ROPN1 5'UTR 0.36 TCGA-DK-A6AW-01 3 124066009 124066009 A G KALRN Missense_Mutation p.N554S 0.45 deleterious(0.02) unknown(0) TCGA-DK-A6AW-01 3 124398310 124398310 G A KALRN Silent p.T744T 0.41 TCGA-DK-A6AW-01 3 124641134 124641134 C T MUC13 Silent p.G217G 0.46 TCGA-DK-A6AW-01 3 124829153 124829153 A C SLC12A8 Silent p.L313L 0.12 TCGA-DK-A6AW-01 3 126126064 126126064 G T CCDC37 Missense_Mutation p.E33D 0.37 tolerated_low_confidence(0.33) benign(0) TCGA-DK-A6AW-01 3 1262459 1262459 G T CNTN6 Silent p.L48L 0.48 TCGA-DK-A6AW-01 3 126748844 126748844 T C PLXNA1 Silent p.R1666R 0.07 TCGA-DK-A6AW-01 3 127379491 127379491 C A PODXL2 Missense_Mutation p.S207Y 0.47 tolerated(0.21) benign(0.169) TCGA-DK-A6AW-01 3 127778963 127778963 C A SEC61A1 Missense_Mutation p.T124N 0.52 deleterious(0) benign(0.25) TCGA-DK-A6AW-01 3 127816333 127816333 G A RUVBL1 Nonsense_Mutation p.R276* 0.52 TCGA-DK-A6AW-01 3 128182073 128182073 C T DNAJB8 Missense_Mutation p.E6K 0.43 tolerated(0.16) benign(0.041) TCGA-DK-A6AW-01 3 128696921 128696921 C A KIAA1257 Nonsense_Mutation p.E259* 0.43 TCGA-DK-A6AW-01 3 128712032 128712032 G A KIAA1257 Missense_Mutation p.A39V 0.37 tolerated(0.53) benign(0.038) TCGA-DK-A6AW-01 3 128889141 128889141 C A CNBP 3'UTR 0.31 TCGA-DK-A6AW-01 3 129373935 129373935 A G TMCC1 Missense_Mutation p.L508S 0.14 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 3 12950869 12950869 A C IQSEC1 Missense_Mutation p.F842V 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 3 130947485 130947485 G T NEK11 Nonsense_Mutation p.E505* 0.45 TCGA-DK-A6AW-01 3 131102021 131102021 C T NUDT16 3'UTR 0.42 TCGA-DK-A6AW-01 3 131253982 131253982 A C CPNE4 3'UTR 0.40 TCGA-DK-A6AW-01 3 131300462 131300462 A C CPNE4 Missense_Mutation p.N276K 0.45 tolerated(0.42) probably_damaging(0.986) TCGA-DK-A6AW-01 3 132063831 132063831 G T ACPP Nonsense_Mutation p.E237* 0.33 TCGA-DK-A6AW-01 3 132390938 132390938 T C UBA5 Silent p.T243T 0.14 TCGA-DK-A6AW-01 3 132419185 132419185 G A NPHP3 Missense_Mutation p.T579I 0.44 deleterious(0.02) possibly_damaging(0.452) TCGA-DK-A6AW-01 3 133099153 133099153 C T TMEM108 Nonsense_Mutation p.R200* 0.42 TCGA-DK-A6AW-01 3 133099611 133099611 C A TMEM108 Silent p.V352V 0.52 TCGA-DK-A6AW-01 3 133476623 133476623 G T TF Missense_Mutation p.G294V 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-DK-A6AW-01 3 133910696 133910696 C A RYK Nonsense_Mutation p.E339* 0.55 TCGA-DK-A6AW-01 3 134898755 134898755 G A EPHB1 Missense_Mutation p.E605K 0.46 deleterious(0.05) probably_damaging(0.943) TCGA-DK-A6AW-01 3 135742027 135742027 C A PPP2R3A Intron 0.45 TCGA-DK-A6AW-01 3 135759757 135759757 G T PPP2R3A Missense_Mutation p.E773D 0.34 tolerated(0.12) benign(0.042) TCGA-DK-A6AW-01 3 138091900 138091900 C A MRAS Missense_Mutation p.Q59K 0.46 tolerated(0.21) benign(0.384) TCGA-DK-A6AW-01 3 138117333 138117333 G A MRAS Missense_Mutation p.V124M 0.47 deleterious(0) probably_damaging(0.939) TCGA-DK-A6AW-01 3 138174086 138174086 C T ESYT3 Silent p.F140F 0.47 TCGA-DK-A6AW-01 3 138738875 138738875 G T PRR23B Missense_Mutation p.S210Y 0.46 deleterious(0.04) probably_damaging(0.996) TCGA-DK-A6AW-01 3 13896086 13896086 C A WNT7A Missense_Mutation p.E171D 0.43 deleterious(0.04) possibly_damaging(0.766) TCGA-DK-A6AW-01 3 139236298 139236298 T G RBP1 3'UTR 0.50 TCGA-DK-A6AW-01 3 140397283 140397283 C T TRIM42 Missense_Mutation p.A71V 0.43 deleterious(0.01) probably_damaging(0.962) TCGA-DK-A6AW-01 3 141259419 141259419 G T RASA2 Missense_Mutation p.E165D 0.33 tolerated(1) benign(0) TCGA-DK-A6AW-01 3 142131394 142131394 T C XRN1 Missense_Mutation p.I569V 0.41 deleterious(0.01) benign(0.155) TCGA-DK-A6AW-01 3 142180886 142180886 C T ATR Missense_Mutation p.R2363Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 3 142280192 142280192 T G ATR Missense_Mutation p.Q414H 0.47 tolerated_low_confidence(0.12) benign(0.002) TCGA-DK-A6AW-01 3 142395115 142395115 G A PLS1 Missense_Mutation p.D161N 0.44 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A6AW-01 3 142496512 142496512 C T TRPC1 Missense_Mutation p.A224V 0.41 deleterious(0) benign(0.243) TCGA-DK-A6AW-01 3 142525070 142525070 G T TRPC1 Missense_Mutation p.R792I 0.55 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-DK-A6AW-01 3 142775279 142775279 A C U2SURP Missense_Mutation p.K1026T 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A6AW-01 3 143212549 143212549 G A SLC9A9 Silent p.L421L 0.43 TCGA-DK-A6AW-01 3 145828192 145828192 T G PLOD2 Missense_Mutation p.K128Q 0.37 deleterious(0.04) probably_damaging(0.995) TCGA-DK-A6AW-01 3 147114119 147114119 C A ZIC4 Missense_Mutation p.D120Y 0.50 deleterious(0) probably_damaging(0.936) TCGA-DK-A6AW-01 3 148459909 148459909 C T AGTR1 3'UTR 0.46 TCGA-DK-A6AW-01 3 148596504 148596504 C A CPA3 Missense_Mutation p.T148N 0.31 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 3 148881693 148881693 C A HPS3 Missense_Mutation p.S849Y 0.59 tolerated(0.65) possibly_damaging(0.571) TCGA-DK-A6AW-01 3 14974219 14974219 G T FGD5 Missense_Mutation p.D1445Y 0.37 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 3 150263499 150263499 A C SERP1 Missense_Mutation p.C51G 0.30 deleterious(0) probably_damaging(0.966) TCGA-DK-A6AW-01 3 150460027 150460027 C A SIAH2 Missense_Mutation p.M292I 0.43 tolerated(0.21) benign(0.002) TCGA-DK-A6AW-01 3 150931340 150931340 G A P2RY14 Silent p.P255P 0.47 TCGA-DK-A6AW-01 3 151012844 151012844 C T GPR87 Missense_Mutation p.V64M 0.39 deleterious(0.04) probably_damaging(0.978) TCGA-DK-A6AW-01 3 151045732 151045732 C A P2RY13 3'UTR 0.48 TCGA-DK-A6AW-01 3 151082810 151082810 A C MED12L Missense_Mutation p.M966L 0.43 tolerated(0.17) benign(0.002) TCGA-DK-A6AW-01 3 151154863 151154863 C T IGSF10 Missense_Mutation p.A2496T 0.44 tolerated(0.26) benign(0.361) TCGA-DK-A6AW-01 3 151164199 151164199 C A IGSF10 Missense_Mutation p.M1190I 0.45 tolerated(0.47) benign(0) TCGA-DK-A6AW-01 3 151171335 151171335 G T IGSF10 Silent p.I184I 0.47 TCGA-DK-A6AW-01 3 151475377 151475377 T G AADACL2 Missense_Mutation p.L401V 0.48 deleterious(0) possibly_damaging(0.81) TCGA-DK-A6AW-01 3 152553912 152553912 A C P2RY1 Missense_Mutation p.K114T 0.43 tolerated(0.07) possibly_damaging(0.657) TCGA-DK-A6AW-01 3 153840780 153840780 G A ARHGEF26 Silent p.S333S 0.52 TCGA-DK-A6AW-01 3 154138928 154138928 G T GPR149 Missense_Mutation p.S508Y 0.53 tolerated(1) benign(0) TCGA-DK-A6AW-01 3 154139270 154139270 C A GPR149 Missense_Mutation p.R394I 0.33 deleterious(0) possibly_damaging(0.703) TCGA-DK-A6AW-01 3 15452882 15452882 G A METTL6 Nonsense_Mutation p.R246* 0.44 TCGA-DK-A6AW-01 3 154886558 154886558 A T MME Missense_Mutation p.D651V 0.34 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 155199813 155199813 C A PLCH1 Missense_Mutation p.E1342D 0.41 tolerated_low_confidence(0.12) benign(0.005) TCGA-DK-A6AW-01 3 155861034 155861034 G A KCNAB1 Intron 0.40 TCGA-DK-A6AW-01 3 156422682 156422682 C T TIPARP Missense_Mutation p.S579F 0.45 deleterious(0) benign(0.309) TCGA-DK-A6AW-01 3 157081391 157081391 C T VEPH1 Silent p.E499E 0.42 TCGA-DK-A6AW-01 3 157154702 157154702 G T PTX3 5'UTR 0.49 TCGA-DK-A6AW-01 3 157160326 157160326 A G PTX3 Missense_Mutation p.E235G 0.48 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 3 157160549 157160549 G A PTX3 Silent p.Q309Q 0.42 TCGA-DK-A6AW-01 3 157160649 157160649 C T PTX3 Missense_Mutation p.L343F 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 157818058 157818058 T G SHOX2 Missense_Mutation p.N224H 0.56 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 3 158383145 158383145 C A GFM1 Nonsense_Mutation p.S467* 0.30 TCGA-DK-A6AW-01 3 158520061 158520061 G A MFSD1 Silent p.A89A 0.36 TCGA-DK-A6AW-01 3 160000352 160000352 C A IFT80 Missense_Mutation p.R477I 0.62 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 3 160283056 160283056 C A KPNA4 Missense_Mutation p.E5D 0.67 tolerated(0.46) benign(0.003) TCGA-DK-A6AW-01 3 160968616 160968616 G A NMD3 Missense_Mutation p.R477Q 0.43 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 3 16252734 16252734 G A GALNT15 Missense_Mutation p.E395K 0.48 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 3 16344927 16344927 C T OXNAD1 Missense_Mutation p.T266M 0.35 tolerated(0.06) benign(0.21) TCGA-DK-A6AW-01 3 16345143 16345143 A C OXNAD1 3'UTR 0.44 TCGA-DK-A6AW-01 3 16419263 16419263 C T RFTN1 Missense_Mutation p.S263N 0.55 tolerated(0.15) benign(0.117) TCGA-DK-A6AW-01 3 164773001 164773001 T G SI Missense_Mutation p.Q498P 0.47 tolerated(1) benign(0.004) TCGA-DK-A6AW-01 3 164776954 164776954 A G SI Splice_Site p.X426_splice 0.44 TCGA-DK-A6AW-01 3 164786574 164786574 C T SI Missense_Mutation p.G140E 0.36 deleterious(0.02) possibly_damaging(0.641) TCGA-DK-A6AW-01 3 164905643 164905643 C A SLITRK3 3'UTR 0.31 TCGA-DK-A6AW-01 3 167034804 167034804 C T ZBBX Missense_Mutation p.E395K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 3 167170777 167170777 G T SERPINI2 Missense_Mutation p.S304Y 0.34 deleterious(0) possibly_damaging(0.642) TCGA-DK-A6AW-01 3 167254787 167254787 C T WDR49 Missense_Mutation p.A257T 0.43 tolerated(0.4) benign(0.007) TCGA-DK-A6AW-01 3 167542311 167542311 G A SERPINI1 Missense_Mutation p.D373N 0.40 tolerated(1) probably_damaging(1) TCGA-DK-A6AW-01 3 167543099 167543099 C T SERPINI1 Silent p.F407F 0.44 TCGA-DK-A6AW-01 3 167543103 167543103 G T SERPINI1 Nonsense_Mutation p.E409* 0.46 TCGA-DK-A6AW-01 3 168834252 168834252 A C MECOM Missense_Mutation p.F347V 0.41 deleterious(0.01) possibly_damaging(0.805) TCGA-DK-A6AW-01 3 169497073 169497073 A C MYNN Missense_Mutation p.K262Q 0.45 tolerated(0.14) probably_damaging(0.948) TCGA-DK-A6AW-01 3 169524705 169524705 G T LRRC34 Silent p.L153L 0.25 TCGA-DK-A6AW-01 3 169525424 169525424 C T LRRC34 Missense_Mutation p.D111N 0.53 deleterious(0.02) probably_damaging(0.992) TCGA-DK-A6AW-01 3 169664173 169664173 C T RP11-379K17.4 RNA 0.43 TCGA-DK-A6AW-01 3 169664530 169664530 C A RP11-379K17.4 RNA 0.41 TCGA-DK-A6AW-01 3 169801744 169801744 G T GPR160 5'UTR 0.45 TCGA-DK-A6AW-01 3 169998123 169998123 C T PRKCI Nonsense_Mutation p.R272* 0.45 TCGA-DK-A6AW-01 3 170078435 170078435 G A SKIL Missense_Mutation p.A106T 0.49 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 3 170079094 170079094 G A SKIL Nonsense_Mutation p.W325* 0.46 TCGA-DK-A6AW-01 3 170184822 170184822 C A SLC7A14 3'UTR 0.52 TCGA-DK-A6AW-01 3 171969146 171969146 G A FNDC3B Missense_Mutation p.R202H 0.38 deleterious(0.05) benign(0.111) TCGA-DK-A6AW-01 3 172098796 172098796 T G FNDC3B Missense_Mutation p.I1072M 0.40 deleterious(0) possibly_damaging(0.828) TCGA-DK-A6AW-01 3 172115087 172115087 C T FNDC3B Missense_Mutation p.A1146V 0.46 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 3 172162971 172162971 C A GHSR Nonsense_Mutation p.E361* 0.42 TCGA-DK-A6AW-01 3 172482138 172482138 G A ECT2 Missense_Mutation p.R380Q 0.51 deleterious(0) benign(0.409) TCGA-DK-A6AW-01 3 173998724 173998724 G T NLGN1 Missense_Mutation p.K701N 0.47 deleterious(0.03) probably_damaging(0.99) TCGA-DK-A6AW-01 3 178928310 178928310 C T PIK3CA Missense_Mutation p.S499F 0.52 tolerated(0.71) benign(0.001) TCGA-DK-A6AW-01 3 179083013 179083013 C T MFN1 Silent p.D251D 0.36 TCGA-DK-A6AW-01 3 179304347 179304347 A C ACTL6A Missense_Mutation p.K379T 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 180327879 180327879 G A TTC14 Missense_Mutation p.R621K 0.41 tolerated_low_confidence(0.21) unknown(0) TCGA-DK-A6AW-01 3 180349284 180349284 C A CCDC39 Missense_Mutation p.E657D 0.44 tolerated(0.27) benign(0.399) TCGA-DK-A6AW-01 3 180675669 180675669 C T FXR1 Nonsense_Mutation p.R315* 0.34 TCGA-DK-A6AW-01 3 180686040 180686040 C A FXR1 Missense_Mutation p.S467Y 0.50 tolerated_low_confidence(0.09) probably_damaging(0.917) TCGA-DK-A6AW-01 3 182586899 182586899 A C ATP11B Silent p.S574S 0.53 TCGA-DK-A6AW-01 3 183212027 183212027 G A KLHL6 Missense_Mutation p.S397L 0.50 tolerated(0.12) possibly_damaging(0.754) TCGA-DK-A6AW-01 3 183551325 183551325 T G PARL Missense_Mutation p.K328T 0.50 deleterious(0.01) possibly_damaging(0.557) TCGA-DK-A6AW-01 3 183703142 183703142 G A ABCC5 Intron 0.43 TCGA-DK-A6AW-01 3 183777366 183777366 G A HTR3C Missense_Mutation p.G288D 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 3 184037587 184037587 A G EIF4G1 Missense_Mutation p.T186A 0.42 tolerated(0.2) benign(0.049) TCGA-DK-A6AW-01 3 184052772 184052772 C T EIF4G1 3'UTR 0.40 TCGA-DK-A6AW-01 3 184633239 184633239 G T VPS8 Nonsense_Mutation p.E787* 0.42 TCGA-DK-A6AW-01 3 184800809 184800809 C A C3orf70 Nonsense_Mutation p.E247* 0.52 TCGA-DK-A6AW-01 3 185329493 185329493 A C SENP2 Missense_Mutation p.Q259H 0.32 tolerated(0.11) possibly_damaging(0.759) TCGA-DK-A6AW-01 3 185906063 185906063 T C DGKG Missense_Mutation p.K675E 0.48 deleterious(0.03) probably_damaging(0.91) TCGA-DK-A6AW-01 3 186335128 186335128 G A AHSG Missense_Mutation p.A188T 0.48 deleterious(0) probably_damaging(0.931) TCGA-DK-A6AW-01 3 186449367 186449367 G A KNG1 Missense_Mutation p.D236N 0.38 tolerated(0.36) benign(0.183) TCGA-DK-A6AW-01 3 186502795 186502795 G T EIF4A2 Missense_Mutation p.A85S 0.42 tolerated(0.11) probably_damaging(0.983) TCGA-DK-A6AW-01 3 186572597 186572597 G A ADIPOQ 3'UTR 0.48 TCGA-DK-A6AW-01 3 186760992 186760992 T C ST6GAL1 Silent p.G167G 0.46 TCGA-DK-A6AW-01 3 186838819 186838819 C A RPL39L 3'UTR 0.42 TCGA-DK-A6AW-01 3 187386772 187386772 G T SST 3'UTR 0.46 TCGA-DK-A6AW-01 3 187419767 187419767 C T RTP2 Silent p.Q50Q 0.35 TCGA-DK-A6AW-01 3 189028277 189028277 C A TPRG1 Missense_Mutation p.F194L 0.51 tolerated(0.15) possibly_damaging(0.64) TCGA-DK-A6AW-01 3 189526267 189526267 C T TP63 Silent p.F177F 0.42 TCGA-DK-A6AW-01 3 190167661 190167661 G T TMEM207 5'UTR 0.35 TCGA-DK-A6AW-01 3 19295208 19295208 G T KCNH8 Missense_Mutation p.D47Y 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 193040354 193040354 C A ATP13A5 Missense_Mutation p.D562Y 0.52 deleterious(0.03) probably_damaging(0.954) TCGA-DK-A6AW-01 3 193082012 193082012 C T ATP13A5 Missense_Mutation p.V41M 0.41 deleterious(0.05) benign(0.168) TCGA-DK-A6AW-01 3 194118414 194118414 G A GP5 Silent p.L200L 0.52 TCGA-DK-A6AW-01 3 195451761 195451762 - A MUC20 Frame_Shift_Ins p.T98Nfs*37 0.32 TCGA-DK-A6AW-01 3 195452907 195452907 C T MUC20 Missense_Mutation p.A478V 0.13 tolerated(0.38) unknown(0) TCGA-DK-A6AW-01 3 195498553 195498553 G T MUC4 Missense_Mutation p.F4404L 0.27 benign(0.008) TCGA-DK-A6AW-01 3 195960119 195960119 G A SLC51A 3'UTR 0.41 TCGA-DK-A6AW-01 3 196281539 196281539 G A WDR53 Missense_Mutation p.S207L 0.48 deleterious(0.02) benign(0.032) TCGA-DK-A6AW-01 3 196434376 196434376 A T CEP19 3'UTR 0.56 TCGA-DK-A6AW-01 3 196534689 196534689 C T PAK2 Missense_Mutation p.P205S 0.47 tolerated(0.16) benign(0.001) TCGA-DK-A6AW-01 3 196612627 196612627 G T SENP5 Missense_Mutation p.R192I 0.46 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-A6AW-01 3 197682651 197682651 G A RPL35A 3'UTR 0.48 TCGA-DK-A6AW-01 3 197712704 197712704 A C LMLN Missense_Mutation p.K291T 0.42 deleterious(0.04) benign(0.363) TCGA-DK-A6AW-01 3 19940961 19940961 C T EFHB Missense_Mutation p.E489K 0.34 deleterious(0) benign(0.387) TCGA-DK-A6AW-01 3 19959755 19959755 G A EFHB Silent p.T382T 0.41 TCGA-DK-A6AW-01 3 20017543 20017543 C T RAB5A Missense_Mutation p.S107F 0.38 deleterious(0) probably_damaging(0.921) TCGA-DK-A6AW-01 3 21478560 21478560 G A ZNF385D Missense_Mutation p.S192F 0.04 deleterious(0.01) benign(0.023) TCGA-DK-A6AW-01 3 23942341 23942341 C A NKIRAS1 Missense_Mutation p.E98D 0.48 tolerated(0.47) benign(0.013) TCGA-DK-A6AW-01 3 25611288 25611288 C T RARB Missense_Mutation p.S163L 0.39 tolerated(0.48) benign(0.017) TCGA-DK-A6AW-01 3 27297790 27297790 G A NEK10 Missense_Mutation p.S696F 0.41 deleterious(0) probably_damaging(0.954) TCGA-DK-A6AW-01 3 27326345 27326345 T C NEK10 Missense_Mutation p.K633E 0.07 tolerated(0.19) benign(0.023) TCGA-DK-A6AW-01 3 27465554 27465554 C A SLC4A7 Nonsense_Mutation p.E405* 0.08 TCGA-DK-A6AW-01 3 27498151 27498151 C A SLC4A7 Missense_Mutation p.K8N 0.52 tolerated_low_confidence(0.23) benign(0) TCGA-DK-A6AW-01 3 28382066 28382066 C A AZI2 Nonsense_Mutation p.E15* 0.40 TCGA-DK-A6AW-01 3 3144427 3144427 G T IL5RA Missense_Mutation p.P54T 0.43 deleterious(0.03) possibly_damaging(0.45) TCGA-DK-A6AW-01 3 32758677 32758677 C A CNOT10 Missense_Mutation p.S291Y 0.45 deleterious(0.01) possibly_damaging(0.812) TCGA-DK-A6AW-01 3 32932217 32932217 C A TRIM71 Silent p.V507V 0.58 TCGA-DK-A6AW-01 3 33183990 33183990 C A CRTAP 3'UTR 0.47 TCGA-DK-A6AW-01 3 33644563 33644563 C T CLASP2 Missense_Mutation p.R603Q 0.64 deleterious(0.03) probably_damaging(0.913) TCGA-DK-A6AW-01 3 35730874 35730874 C A ARPP21 Missense_Mutation p.S161Y 0.50 deleterious(0) probably_damaging(0.915) TCGA-DK-A6AW-01 3 36897243 36897243 C A TRANK1 Nonsense_Mutation p.E1280* 0.40 TCGA-DK-A6AW-01 3 37070285 37070285 C T MLH1 Missense_Mutation p.R474W 0.45 deleterious(0.02) benign(0.009) TCGA-DK-A6AW-01 3 37458861 37458861 G T C3orf35 Missense_Mutation p.R35I 0.42 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-DK-A6AW-01 3 37547516 37547516 C A ITGA9 Missense_Mutation p.F256L 0.22 deleterious(0) benign(0.303) TCGA-DK-A6AW-01 3 37818894 37818894 G A ITGA9 Silent p.E851E 0.53 TCGA-DK-A6AW-01 3 38158718 38158718 G T DLEC1 Missense_Mutation p.G1442V 0.60 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 3 38224568 38224568 A C OXSR1 Missense_Mutation p.N49H 0.53 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 3 38315781 38315781 C T SLC22A13 Missense_Mutation p.R133W 0.47 deleterious(0.01) possibly_damaging(0.686) TCGA-DK-A6AW-01 3 38437043 38437043 G T XYLB Nonsense_Mutation p.E447* 0.38 TCGA-DK-A6AW-01 3 38597192 38597192 C T SCN5A Silent p.K1499K 0.53 TCGA-DK-A6AW-01 3 38645525 38645525 C T SCN5A Missense_Mutation p.R523H 0.38 tolerated(0.12) benign(0.005) TCGA-DK-A6AW-01 3 38835477 38835477 C T SCN10A Missense_Mutation p.E9K 0.39 tolerated(0.11) benign(0.102) TCGA-DK-A6AW-01 3 38888976 38888976 C T SCN11A Missense_Mutation p.D1529N 0.41 deleterious(0.04) probably_damaging(1) TCGA-DK-A6AW-01 3 38891865 38891865 G T SCN11A Intron 0.56 TCGA-DK-A6AW-01 3 38891991 38891991 G A SCN11A Silent p.V1436V 0.46 TCGA-DK-A6AW-01 3 39453486 39453486 C T RPSA Missense_Mutation p.P243S 0.38 tolerated(0.05) benign(0.007) TCGA-DK-A6AW-01 3 40429554 40429554 C A ENTPD3 Missense_Mutation p.F2L 0.48 tolerated_low_confidence(0.3) benign(0.006) TCGA-DK-A6AW-01 3 40553062 40553062 G A ZNF620 Silent p.E42E 0.45 TCGA-DK-A6AW-01 3 41746765 41746765 C T ULK4 Silent p.T889T 0.41 TCGA-DK-A6AW-01 3 424307 424307 G A CHL1 Missense_Mutation p.R710K 0.40 tolerated(0.43) benign(0.011) TCGA-DK-A6AW-01 3 42675106 42675106 T C NKTR Missense_Mutation p.S270P 0.37 tolerated_low_confidence(0.1) unknown(0) TCGA-DK-A6AW-01 3 42729672 42729672 G A KLHL40 Silent p.P397P 0.10 TCGA-DK-A6AW-01 3 42732463 42732463 G T KLHL40 Nonsense_Mutation p.E574* 0.41 TCGA-DK-A6AW-01 3 42956214 42956214 G A ZNF662 Missense_Mutation p.E243K 0.46 tolerated(0.1) benign(0.02) TCGA-DK-A6AW-01 3 43647355 43647355 T G ANO10 Intron 0.67 TCGA-DK-A6AW-01 3 440038 440038 T C CHL1 Missense_Mutation p.F1075L 0.43 tolerated(0.07) possibly_damaging(0.702) TCGA-DK-A6AW-01 3 440760 440760 C T CHL1 Missense_Mutation p.A1105V 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 3 44685219 44685219 G T ZNF197 Missense_Mutation p.R866I 0.14 tolerated(0.05) probably_damaging(0.939) TCGA-DK-A6AW-01 3 44935097 44935097 C T TGM4 Silent p.D153D 0.54 TCGA-DK-A6AW-01 3 44951728 44951728 G A TGM4 Missense_Mutation p.V492M 0.07 deleterious(0) possibly_damaging(0.839) TCGA-DK-A6AW-01 3 45136976 45136976 A C CDCP1 Missense_Mutation p.F370C 0.46 deleterious(0.04) probably_damaging(0.946) TCGA-DK-A6AW-01 3 45807212 45807212 C T SLC6A20 Missense_Mutation p.A374T 0.37 deleterious(0) probably_damaging(0.936) TCGA-DK-A6AW-01 3 45812876 45812876 G A SLC6A20 Silent p.F256F 0.49 TCGA-DK-A6AW-01 3 45943151 45943151 G A CCR9 Missense_Mutation p.V291I 0.49 tolerated(0.72) benign(0.002) TCGA-DK-A6AW-01 3 46245238 46245238 G A CCR1 Silent p.H189H 0.39 TCGA-DK-A6AW-01 3 46415050 46415050 A C CCR5 Missense_Mutation p.K219N 0.43 tolerated(0.1) benign(0.078) TCGA-DK-A6AW-01 3 46580601 46580601 A C LRRC2 Missense_Mutation p.L142V 0.39 tolerated(0.17) probably_damaging(0.917) TCGA-DK-A6AW-01 3 46621501 46621501 C T TDGF1 Silent p.C133C 0.48 TCGA-DK-A6AW-01 3 46751145 46751145 G T TMIE Missense_Mutation p.K146N 0.41 tolerated(0.06) unknown(0) TCGA-DK-A6AW-01 3 46784504 46784504 T C PRSS45 Missense_Mutation p.R118G 0.15 tolerated(0.07) benign(0.234) TCGA-DK-A6AW-01 3 46874577 46874577 C T PRSS42 Missense_Mutation p.R164Q 0.45 tolerated(0.75) benign(0.015) TCGA-DK-A6AW-01 3 47284599 47284599 T G KIF9 Missense_Mutation p.T551P 0.23 tolerated(0.08) benign(0.323) TCGA-DK-A6AW-01 3 47950747 47950747 G A MAP4 Intron 0.42 TCGA-DK-A6AW-01 3 47958662 47958662 G A MAP4 Missense_Mutation p.P219S 0.40 deleterious(0.05) benign(0.004) TCGA-DK-A6AW-01 3 48602392 48602392 T C COL7A1 Missense_Mutation p.D2881G 0.36 benign(0.361) TCGA-DK-A6AW-01 3 48955964 48955964 G A ARIH2OS Missense_Mutation p.R207W 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-DK-A6AW-01 3 49142092 49142092 C A QARS Missense_Mutation p.K25N 0.37 tolerated(0.06) probably_damaging(0.925) TCGA-DK-A6AW-01 3 49156594 49156594 C T USP19 5'UTR 0.43 TCGA-DK-A6AW-01 3 49293883 49293883 T G CCDC36 Missense_Mutation p.F318C 0.48 tolerated(0.17) benign(0.103) TCGA-DK-A6AW-01 3 49308834 49308834 C A C3orf62 Nonsense_Mutation p.E195* 0.49 TCGA-DK-A6AW-01 3 50644972 50644972 T C CISH 3'UTR 0.43 TCGA-DK-A6AW-01 3 51451487 51451487 C T VPRBP Missense_Mutation p.R854Q 0.26 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 52021575 52021575 T G ACY1 Missense_Mutation p.F286V 0.61 deleterious(0) probably_damaging(0.968) TCGA-DK-A6AW-01 3 52394327 52394327 G A DNAH1 Silent p.R1524R 0.54 TCGA-DK-A6AW-01 3 52455719 52455719 G A PHF7 Missense_Mutation p.R210Q 0.44 tolerated(0.09) probably_damaging(0.996) TCGA-DK-A6AW-01 3 52486246 52486246 G T TNNC1 Silent p.I26I 0.49 TCGA-DK-A6AW-01 3 52620542 52620542 G A PBRM1 Missense_Mutation p.R1071C 0.45 deleterious(0) possibly_damaging(0.835) TCGA-DK-A6AW-01 3 52637690 52637690 G A PBRM1 Missense_Mutation p.R876C 0.45 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 3 52851021 52851021 C T ITIH4 Missense_Mutation p.E784K 0.43 tolerated(0.24) benign(0.064) TCGA-DK-A6AW-01 3 52852149 52852149 G A ITIH4 Missense_Mutation p.P739S 0.37 tolerated(0.06) benign(0.411) TCGA-DK-A6AW-01 3 53785873 53785873 C T CACNA1D Missense_Mutation p.S1225L 0.39 deleterious(0.01) benign(0.115) TCGA-DK-A6AW-01 3 56114959 56114959 T G ERC2 Missense_Mutation p.K509N 0.47 tolerated(0.07) probably_damaging(0.996) TCGA-DK-A6AW-01 3 56330352 56330352 C T ERC2 Missense_Mutation p.E257K 0.45 tolerated(0.05) probably_damaging(0.954) TCGA-DK-A6AW-01 3 56468430 56468430 C T ERC2 Silent p.A202A 0.54 TCGA-DK-A6AW-01 3 57135251 57135251 C T IL17RD Missense_Mutation p.V374I 0.53 tolerated(0.71) benign(0.03) TCGA-DK-A6AW-01 3 59999858 59999858 G A FHIT Missense_Mutation p.R42W 0.45 deleterious(0) possibly_damaging(0.895) TCGA-DK-A6AW-01 3 62254772 62254772 G A PTPRG Silent p.T979T 0.54 TCGA-DK-A6AW-01 3 62317067 62317067 C A C3orf14 Missense_Mutation p.S82Y 0.36 deleterious(0.04) probably_damaging(0.955) TCGA-DK-A6AW-01 3 62570893 62570893 C T CADPS Missense_Mutation p.R515Q 0.42 deleterious(0) benign(0.238) TCGA-DK-A6AW-01 3 63638419 63638419 C T SNTN Missense_Mutation p.P19L 0.53 deleterious(0.04) benign(0.059) TCGA-DK-A6AW-01 3 64004993 64004993 C T PSMD6 Missense_Mutation p.R159Q 0.49 tolerated(0.13) benign(0.298) TCGA-DK-A6AW-01 3 64148736 64148736 G A PRICKLE2 Nonsense_Mutation p.R72* 0.49 TCGA-DK-A6AW-01 3 65415708 65415708 G A MAGI1 Missense_Mutation p.L552F 0.40 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 3 6903464 6903464 A G GRM7 Missense_Mutation p.D130G 0.44 tolerated(0.07) benign(0.249) TCGA-DK-A6AW-01 3 69088121 69088121 C A TMF1 Nonsense_Mutation p.E623* 0.41 TCGA-DK-A6AW-01 3 69127035 69127035 C A UBA3 Missense_Mutation p.D33Y 0.45 deleterious(0.01) possibly_damaging(0.841) TCGA-DK-A6AW-01 3 69134240 69134240 C A ARL6IP5 Missense_Mutation p.F14L 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 3 75472058 75472058 C A FAM86DP RNA 0.46 TCGA-DK-A6AW-01 3 77089909 77089909 G T ROBO2 Intron 0.55 TCGA-DK-A6AW-01 3 77656988 77656988 C A ROBO2 Missense_Mutation p.S1075Y 0.44 tolerated(0.15) benign(0.006) TCGA-DK-A6AW-01 3 77666773 77666773 C T ROBO2 Nonsense_Mutation p.R1151* 0.47 TCGA-DK-A6AW-01 3 78649352 78649352 C A ROBO1 Nonsense_Mutation p.E1618* 0.44 TCGA-DK-A6AW-01 3 86996116 86996116 C A VGLL3 3'UTR 0.47 TCGA-DK-A6AW-01 3 88040998 88040998 T C HTR1F Nonstop_Mutation p.*367Qext*2 0.41 TCGA-DK-A6AW-01 3 89156944 89156944 C A EPHA3 Missense_Mutation p.L16I 0.50 tolerated(0.14) benign(0.007) TCGA-DK-A6AW-01 3 89528657 89528657 C T EPHA3 3'UTR 0.46 TCGA-DK-A6AW-01 3 8983425 8983425 C A RAD18 Missense_Mutation p.K110N 0.38 deleterious(0) benign(0.065) TCGA-DK-A6AW-01 3 93605335 93605335 C A PROS1 Nonsense_Mutation p.E390* 0.46 TCGA-DK-A6AW-01 3 93611797 93611797 T G PROS1 Missense_Mutation p.N379H 0.50 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 3 93772128 93772128 C A ARL13B 3'UTR 0.52 TCGA-DK-A6AW-01 3 93779975 93779975 A T DHFRL1 Missense_Mutation p.N127K 0.50 tolerated(0.23) benign(0.011) TCGA-DK-A6AW-01 3 93845425 93845425 C A NSUN3 3'UTR 0.40 TCGA-DK-A6AW-01 3 9426424 9426424 G T THUMPD3 3'UTR 0.50 TCGA-DK-A6AW-01 3 95374183 95374183 G A MTHFD2P1 RNA 0.41 TCGA-DK-A6AW-01 3 97124071 97124071 T G EPHA6 Missense_Mutation p.F562V 0.35 tolerated(0.24) benign(0.146) TCGA-DK-A6AW-01 3 9754459 9754459 C A CPNE9 Missense_Mutation p.F164L 0.05 tolerated(0.31) possibly_damaging(0.856) TCGA-DK-A6AW-01 3 98072988 98072988 T C OR5K4 Silent p.C97C 0.49 TCGA-DK-A6AW-01 3 98240496 98240496 C T CLDND1 Splice_Site p.X17_splice 0.33 TCGA-DK-A6AW-01 3 9843423 9843423 C T ARPC4 Nonsense_Mutation p.R124* 0.67 TCGA-DK-A6AW-01 3 9934846 9934846 G A JAGN1 Missense_Mutation p.A113T 0.54 tolerated(0.11) benign(0.207) TCGA-DK-A6AW-01 3 9944549 9944549 G A IL17RE Intron 0.40 TCGA-DK-A6AW-01 3 9974383 9974383 G A IL17RC Silent p.A564A 0.52 TCGA-DK-A6AW-01 3 9988136 9988136 G T PRRT3 Missense_Mutation p.F907L 0.40 tolerated(0.23) benign(0.016) TCGA-DK-A6AW-01 4 100266053 100266053 G A ADH1C Missense_Mutation p.S178L 0.38 possibly_damaging(0.464) TCGA-DK-A6AW-01 4 100334163 100334163 C A ADH7 3'Flank 0.38 TCGA-DK-A6AW-01 4 100434237 100434237 A G C4orf17 5'UTR 0.52 TCGA-DK-A6AW-01 4 100512945 100512945 G A MTTP Silent p.S252S 0.46 TCGA-DK-A6AW-01 4 100532314 100532314 G A MTTP Missense_Mutation p.R595Q 0.53 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 4 100761453 100761453 G T DAPP1 Missense_Mutation p.D78Y 0.88 deleterious(0) probably_damaging(0.933) TCGA-DK-A6AW-01 4 102751096 102751096 C T BANK1 Missense_Mutation p.R68W 0.32 tolerated(0.19) benign(0.002) TCGA-DK-A6AW-01 4 103184169 103184169 C T SLC39A8 3'UTR 0.47 TCGA-DK-A6AW-01 4 103505859 103505859 T G NFKB1 Silent p.T316T 0.15 TCGA-DK-A6AW-01 4 103806290 103806290 A T CISD2 Intron 0.58 TCGA-DK-A6AW-01 4 103979113 103979113 A C SLC9B2 Missense_Mutation p.L96R 0.46 deleterious(0) probably_damaging(0.918) TCGA-DK-A6AW-01 4 104031992 104031992 A C CENPE Missense_Mutation p.L2573V 0.35 probably_damaging(0.967) TCGA-DK-A6AW-01 4 104032039 104032039 G T CENPE Missense_Mutation p.S2557Y 0.34 probably_damaging(0.935) TCGA-DK-A6AW-01 4 104067204 104067204 T C CENPE Missense_Mutation p.T1399A 0.48 benign(0.004) TCGA-DK-A6AW-01 4 104080304 104080304 A C CENPE Missense_Mutation p.F822V 0.52 benign(0.008) TCGA-DK-A6AW-01 4 10445050 10445050 C T ZNF518B Missense_Mutation p.G968D 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 4 10446329 10446329 C T ZNF518B Missense_Mutation p.E542K 0.50 tolerated(0.08) possibly_damaging(0.612) TCGA-DK-A6AW-01 4 10447966 10447966 C A ZNF518B 5'UTR 0.38 TCGA-DK-A6AW-01 4 10492052 10492052 C T CLNK 3'UTR 0.64 TCGA-DK-A6AW-01 4 10515119 10515119 C T CLNK Missense_Mutation p.R292K 0.35 tolerated(0.41) benign(0.021) TCGA-DK-A6AW-01 4 10515185 10515185 C A CLNK Missense_Mutation p.R270I 0.71 deleterious(0) probably_damaging(0.945) TCGA-DK-A6AW-01 4 108603275 108603275 C T PAPSS1 Missense_Mutation p.D189N 0.46 deleterious(0.02) benign(0.12) TCGA-DK-A6AW-01 4 108985529 108985529 C A LEF1 Missense_Mutation p.K376N 0.36 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 4 109543281 109543281 G T RPL34 Missense_Mutation p.R29I 0.45 deleterious(0.04) benign(0.084) TCGA-DK-A6AW-01 4 109734966 109734966 G T COL25A1 3'UTR 0.39 TCGA-DK-A6AW-01 4 110608818 110608818 C T CCDC109B 3'UTR 0.39 TCGA-DK-A6AW-01 4 110635614 110635614 A G PLA2G12A Silent p.V163V 0.46 TCGA-DK-A6AW-01 4 110662224 110662224 C T CFI Missense_Mutation p.G526E 0.44 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 4 110895864 110895864 C A EGF Missense_Mutation p.S577Y 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-DK-A6AW-01 4 111412298 111412298 G T ENPEP Missense_Mutation p.R299I 0.41 tolerated(0.09) possibly_damaging(0.774) TCGA-DK-A6AW-01 4 111452430 111452430 G T ENPEP Nonsense_Mutation p.E602* 0.39 TCGA-DK-A6AW-01 4 111464013 111464013 G A ENPEP Silent p.S638S 0.35 TCGA-DK-A6AW-01 4 113199378 113199378 A G TIFA Silent p.V65V 0.39 TCGA-DK-A6AW-01 4 114257199 114257199 C T ANK2 Missense_Mutation p.R1193C 0.44 probably_damaging(1) TCGA-DK-A6AW-01 4 114275130 114275130 A G ANK2 Missense_Mutation p.K1786E 0.38 possibly_damaging(0.476) TCGA-DK-A6AW-01 4 114275390 114275390 G A ANK2 Silent p.S1872S 0.44 TCGA-DK-A6AW-01 4 114275856 114275856 C T ANK2 Missense_Mutation p.R2028W 0.49 probably_damaging(0.969) TCGA-DK-A6AW-01 4 114276929 114276929 T G ANK2 Silent p.P2385P 0.41 TCGA-DK-A6AW-01 4 114278585 114278585 C A ANK2 Missense_Mutation p.F2937L 0.45 benign(0.113) TCGA-DK-A6AW-01 4 114279629 114279629 C T ANK2 Silent p.I3285I 0.47 TCGA-DK-A6AW-01 4 114290844 114290844 G T ANK2 Missense_Mutation p.E3831D 0.46 benign(0.065) TCGA-DK-A6AW-01 4 115544835 115544835 A C UGT8 Missense_Mutation p.K267Q 0.40 tolerated(0.07) possibly_damaging(0.745) TCGA-DK-A6AW-01 4 115997437 115997437 G T NDST4 Silent p.L252L 0.37 TCGA-DK-A6AW-01 4 118005862 118005862 C T TRAM1L1 Missense_Mutation p.E230K 0.36 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 4 118006501 118006501 C A TRAM1L1 Nonsense_Mutation p.E17* 0.50 TCGA-DK-A6AW-01 4 119618422 119618422 G A METTL14 Missense_Mutation p.E197K 0.39 deleterious(0) possibly_damaging(0.767) TCGA-DK-A6AW-01 4 119947996 119947996 G T SYNPO2 Nonsense_Mutation p.E158* 0.35 TCGA-DK-A6AW-01 4 119952936 119952936 G T SYNPO2 Missense_Mutation p.M1002I 0.42 tolerated(0.4) benign(0.001) TCGA-DK-A6AW-01 4 119953282 119953282 G A SYNPO2 Intron 0.89 TCGA-DK-A6AW-01 4 120107324 120107324 A G MYOZ2 Missense_Mutation p.D255G 0.44 tolerated(0.25) unknown(0) TCGA-DK-A6AW-01 4 120181689 120181689 C T USP53 Missense_Mutation p.R235C 0.60 deleterious(0.04) probably_damaging(0.999) TCGA-DK-A6AW-01 4 121616327 121616327 A C PRDM5 Missense_Mutation p.F611C 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 4 121742374 121742374 C A PRDM5 Nonsense_Mutation p.E143* 0.41 TCGA-DK-A6AW-01 4 122075810 122075810 C A TNIP3 Nonsense_Mutation p.E207* 0.48 TCGA-DK-A6AW-01 4 122722628 122722628 G A EXOSC9 Missense_Mutation p.A17T 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A6AW-01 4 122760801 122760801 T C BBS7 Silent p.T452T 0.51 TCGA-DK-A6AW-01 4 122768571 122768571 A T BBS7 Missense_Mutation p.I342N 0.41 deleterious(0) possibly_damaging(0.795) TCGA-DK-A6AW-01 4 123113404 123113404 G A KIAA1109 Missense_Mutation p.E308K 0.48 probably_damaging(0.941) TCGA-DK-A6AW-01 4 123151099 123151099 G A KIAA1109 Missense_Mutation p.R1019Q 0.50 possibly_damaging(0.463) TCGA-DK-A6AW-01 4 123350857 123350857 T C ADAD1 Missense_Mutation p.I565T 0.49 deleterious(0.02) possibly_damaging(0.71) TCGA-DK-A6AW-01 4 123664984 123664984 G T BBS12 Missense_Mutation p.R646I 0.52 tolerated(0.5) benign(0.083) TCGA-DK-A6AW-01 4 123814221 123814221 A C NUDT6 Missense_Mutation p.F238C 0.55 tolerated(0.07) benign(0.011) TCGA-DK-A6AW-01 4 125591545 125591545 C T ANKRD50 Missense_Mutation p.E963K 0.45 tolerated(0.41) benign(0.252) TCGA-DK-A6AW-01 4 126237778 126237778 C T FAT4 Missense_Mutation p.T71I 0.46 possibly_damaging(0.632) TCGA-DK-A6AW-01 4 126371153 126371153 A C FAT4 Missense_Mutation p.K2994N 0.46 probably_damaging(0.988) TCGA-DK-A6AW-01 4 126398489 126398489 A G FAT4 Missense_Mutation p.Q4158R 0.50 benign(0.001) TCGA-DK-A6AW-01 4 128651823 128651823 C T SLC25A31 Silent p.I41I 0.41 TCGA-DK-A6AW-01 4 128807853 128807853 C A PLK4 Missense_Mutation p.S443Y 0.70 tolerated(0.61) possibly_damaging(0.655) TCGA-DK-A6AW-01 4 129782878 129782878 G A JADE1 Missense_Mutation p.R334H 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-DK-A6AW-01 4 130030886 130030886 C A C4orf33 Intron 0.58 TCGA-DK-A6AW-01 4 13383200 13383200 C T RAB28 Missense_Mutation p.R137Q 0.43 tolerated(0.07) benign(0.431) TCGA-DK-A6AW-01 4 141543269 141543269 G T TBC1D9 3'UTR 0.48 TCGA-DK-A6AW-01 4 144124645 144124645 G T USP38 Nonsense_Mutation p.E379* 0.27 TCGA-DK-A6AW-01 4 144378845 144378845 A C GAB1 Missense_Mutation p.K533T 0.17 tolerated(0.05) probably_damaging(0.959) TCGA-DK-A6AW-01 4 144922437 144922437 C A GYPB Splice_Site p.X13_splice 0.22 TCGA-DK-A6AW-01 4 145041742 145041742 C A GYPA Splice_Site p.X13_splice 0.65 TCGA-DK-A6AW-01 4 145659132 145659132 C A HHIP 3'UTR 0.52 TCGA-DK-A6AW-01 4 146042527 146042527 T G ABCE1 Missense_Mutation p.I416S 0.49 deleterious(0) possibly_damaging(0.904) TCGA-DK-A6AW-01 4 146435673 146435673 C A SMAD1 5'UTR 0.31 TCGA-DK-A6AW-01 4 146436069 146436069 G T SMAD1 Nonsense_Mutation p.E102* 0.06 TCGA-DK-A6AW-01 4 146576485 146576485 C T MMAA Missense_Mutation p.R386W 0.42 deleterious(0) possibly_damaging(0.453) TCGA-DK-A6AW-01 4 146823424 146823424 C T ZNF827 Silent p.P329P 0.48 TCGA-DK-A6AW-01 4 146824009 146824009 G A ZNF827 Silent p.L134L 0.40 TCGA-DK-A6AW-01 4 147227130 147227130 G T SLC10A7 Missense_Mutation p.S168Y 0.52 deleterious(0) possibly_damaging(0.905) TCGA-DK-A6AW-01 4 147561068 147561068 C T POU4F2 Missense_Mutation p.A113V 0.55 deleterious_low_confidence(0.05) probably_damaging(0.935) TCGA-DK-A6AW-01 4 147561909 147561909 C T POU4F2 Silent p.F393F 0.38 TCGA-DK-A6AW-01 4 148463676 148463676 C T EDNRA Missense_Mutation p.S397L 0.39 tolerated(0.56) benign(0.001) TCGA-DK-A6AW-01 4 151412123 151412123 G T LRBA Missense_Mutation p.S2143Y 0.41 deleterious(0.02) benign(0.025) TCGA-DK-A6AW-01 4 151773252 151773252 C T LRBA Missense_Mutation p.D1204N 0.50 tolerated_low_confidence(0.15) benign(0.196) TCGA-DK-A6AW-01 4 153332524 153332524 C T FBXW7 Silent p.T144T 0.48 TCGA-DK-A6AW-01 4 153332913 153332915 TTC GAGTTT FBXW7 In_Frame_Ins p.R14_T15delinsQTP 0.45 TCGA-DK-A6AW-01 4 153691554 153691554 G A TIGD4 Silent p.G201G 0.43 TCGA-DK-A6AW-01 4 154245282 154245282 C T TRIM2 Silent p.F668F 0.62 TCGA-DK-A6AW-01 4 15444507 15444507 G T C1QTNF7 3'UTR 0.53 TCGA-DK-A6AW-01 4 154702787 154702787 G A SFRP2 Missense_Mutation p.S235L 0.48 tolerated(0.36) benign(0.007) TCGA-DK-A6AW-01 4 155155991 155155991 C T DCHS2 Silent p.K2816K 0.41 TCGA-DK-A6AW-01 4 155156994 155156994 A C DCHS2 Missense_Mutation p.L2482W 0.45 tolerated(0.19) benign(0.059) TCGA-DK-A6AW-01 4 155157011 155157011 G A DCHS2 Silent p.T2476T 0.40 TCGA-DK-A6AW-01 4 155215 155215 G T ZNF718 RNA 0.50 TCGA-DK-A6AW-01 4 155219368 155219368 T C DCHS2 Missense_Mutation p.D1578G 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 4 155236912 155236912 C T DCHS2 Missense_Mutation p.D1295N 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 4 155487105 155487105 G T FGB Missense_Mutation p.R87I 0.38 tolerated(0.15) benign(0.003) TCGA-DK-A6AW-01 4 155491771 155491771 T G FGB Missense_Mutation p.M482R 0.58 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 4 155510095 155510095 C A FGA Missense_Mutation p.G72W 0.38 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 4 155887 155887 G T ZNF718 RNA 0.32 TCGA-DK-A6AW-01 4 156135189 156135189 T C NPY2R Missense_Mutation p.V33A 0.45 tolerated(0.59) benign(0) TCGA-DK-A6AW-01 4 156135248 156135248 C A NPY2R Missense_Mutation p.L53I 0.41 tolerated(0.05) probably_damaging(0.963) TCGA-DK-A6AW-01 4 156283253 156283253 T A MAP9 Missense_Mutation p.Q250L 0.48 deleterious(0.01) benign(0.066) TCGA-DK-A6AW-01 4 156651408 156651408 C T GUCY1A3 3'UTR 0.36 TCGA-DK-A6AW-01 4 156763487 156763487 G T ASIC5 Missense_Mutation p.P294H 0.40 deleterious(0.02) probably_damaging(0.941) TCGA-DK-A6AW-01 4 156864398 156864398 G A CTSO Nonsense_Mutation p.R52* 0.39 TCGA-DK-A6AW-01 4 157684170 157684170 C T PDGFC 3'UTR 0.56 TCGA-DK-A6AW-01 4 159048553 159048553 C A FAM198B 3'UTR 0.12 TCGA-DK-A6AW-01 4 159567974 159567974 C T RXFP1 Silent p.F459F 0.43 TCGA-DK-A6AW-01 4 159573038 159573038 G T RXFP1 Missense_Mutation p.R702I 0.48 deleterious(0) possibly_damaging(0.62) TCGA-DK-A6AW-01 4 159573227 159573227 C A RXFP1 3'UTR 0.37 TCGA-DK-A6AW-01 4 159825742 159825742 C T FNIP2 3'UTR 0.42 TCGA-DK-A6AW-01 4 159836472 159836472 C A C4orf45 Missense_Mutation p.Q132H 0.40 tolerated(0.52) benign(0.002) TCGA-DK-A6AW-01 4 160262846 160262846 C T RAPGEF2 Nonsense_Mutation p.R728* 0.44 TCGA-DK-A6AW-01 4 160262864 160262864 C T RAPGEF2 Missense_Mutation p.R734C 0.91 tolerated(0.1) benign(0.299) TCGA-DK-A6AW-01 4 162402215 162402215 T C FSTL5 Missense_Mutation p.D522G 0.49 tolerated(0.17) probably_damaging(0.98) TCGA-DK-A6AW-01 4 166150063 166150063 C T KLHL2 Missense_Mutation p.T90I 0.33 deleterious(0.01) possibly_damaging(0.903) TCGA-DK-A6AW-01 4 166408598 166408598 G T CPE Missense_Mutation p.D328Y 0.58 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 4 166964495 166964495 G A TLL1 Missense_Mutation p.R483H 0.47 deleterious(0.04) benign(0.359) TCGA-DK-A6AW-01 4 169099069 169099069 C T ANXA10 Missense_Mutation p.T188M 0.10 tolerated(0.07) probably_damaging(0.976) TCGA-DK-A6AW-01 4 169223568 169223568 C A DDX60 Splice_Site p.X203_splice 0.50 TCGA-DK-A6AW-01 4 169327152 169327152 T G DDX60L Missense_Mutation p.E1054D 0.31 deleterious(0.03) possibly_damaging(0.722) TCGA-DK-A6AW-01 4 169931306 169931306 C T CBR4 5'UTR 0.18 TCGA-DK-A6AW-01 4 170042058 170042058 G A SH3RF1 Missense_Mutation p.R477C 0.51 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 4 170650647 170650647 T G C4orf27 3'UTR 0.38 TCGA-DK-A6AW-01 4 170653015 170653015 C A C4orf27 Missense_Mutation p.R250I 0.51 tolerated(0.09) benign(0.005) TCGA-DK-A6AW-01 4 173734758 173734758 C T GALNTL6 Silent p.F269F 0.35 TCGA-DK-A6AW-01 4 173873269 173873269 T C GALNTL6 Missense_Mutation p.S411P 0.38 deleterious(0) benign(0.326) TCGA-DK-A6AW-01 4 174239626 174239626 G A GALNT7 Silent p.Q584Q 0.34 TCGA-DK-A6AW-01 4 174294593 174294593 G A SAP30 Missense_Mutation p.R123Q 0.92 deleterious(0) probably_damaging(0.968) TCGA-DK-A6AW-01 4 175231080 175231080 C T CEP44 Missense_Mutation p.S253L 0.54 tolerated(0.71) benign(0) TCGA-DK-A6AW-01 4 175710015 175710015 T C GLRA3 Missense_Mutation p.M51V 0.47 deleterious(0) possibly_damaging(0.549) TCGA-DK-A6AW-01 4 175897866 175897866 T C ADAM29 Missense_Mutation p.V397A 0.38 tolerated(0.5) benign(0.019) TCGA-DK-A6AW-01 4 176561940 176561940 G A GPM6A Silent p.V194V 0.52 TCGA-DK-A6AW-01 4 176733125 176733125 G A GPM6A Intron 0.67 TCGA-DK-A6AW-01 4 177083257 177083257 G T WDR17 Nonsense_Mutation p.E952* 0.36 TCGA-DK-A6AW-01 4 177100751 177100751 T A WDR17 3'UTR 0.51 TCGA-DK-A6AW-01 4 177114217 177114217 C A SPATA4 Missense_Mutation p.R120I 0.31 deleterious(0) possibly_damaging(0.811) TCGA-DK-A6AW-01 4 17844901 17844901 C T NCAPG Intron 0.35 TCGA-DK-A6AW-01 4 183694775 183694775 C T TENM3 Silent p.I1681I 0.38 TCGA-DK-A6AW-01 4 183714138 183714138 C A TENM3 Missense_Mutation p.Q2105K 0.46 tolerated(0.06) benign(0.292) TCGA-DK-A6AW-01 4 184241024 184241024 C T CLDN22 Silent p.R116R 0.42 TCGA-DK-A6AW-01 4 184930933 184930933 C A STOX2 Silent p.I314I 0.33 TCGA-DK-A6AW-01 4 186111603 186111603 C A KIAA1430 Missense_Mutation p.D250Y 0.54 deleterious(0) probably_damaging(0.959) TCGA-DK-A6AW-01 4 186379494 186379494 G A CCDC110 Silent p.Y749Y 0.50 TCGA-DK-A6AW-01 4 186544572 186544572 G A SORBS2 Nonsense_Mutation p.R767* 0.36 TCGA-DK-A6AW-01 4 187126406 187126406 C A CYP4V2 Missense_Mutation p.S347Y 0.46 tolerated(0.48) possibly_damaging(0.615) TCGA-DK-A6AW-01 4 187130377 187130377 C T CYP4V2 Silent p.R452R 0.52 TCGA-DK-A6AW-01 4 1906097 1906097 A C WHSC1 Missense_Mutation p.K251T 0.42 deleterious(0) probably_damaging(0.952) TCGA-DK-A6AW-01 4 190881990 190881990 T G FRG1 Missense_Mutation p.Y209D 0.35 deleterious(0) possibly_damaging(0.612) TCGA-DK-A6AW-01 4 1955068 1955068 G A WHSC1 Missense_Mutation p.V719M 0.47 tolerated(0.11) possibly_damaging(0.576) TCGA-DK-A6AW-01 4 1976696 1976696 G A WHSC1 Missense_Mutation p.R1160H 0.46 deleterious(0.03) probably_damaging(1) TCGA-DK-A6AW-01 4 20620555 20620555 G A SLIT2 Missense_Mutation p.E1505K 0.51 tolerated(0.48) benign(0.062) TCGA-DK-A6AW-01 4 22389258 22389258 A C GPR125 3'UTR 0.56 TCGA-DK-A6AW-01 4 22390058 22390058 G T GPR125 Missense_Mutation p.S1079Y 0.38 deleterious(0.02) benign(0.332) TCGA-DK-A6AW-01 4 2242294 2242294 G A HAUS3 Missense_Mutation p.A127V 0.45 tolerated(0.53) benign(0.059) TCGA-DK-A6AW-01 4 23803463 23803463 G T PPARGC1A Missense_Mutation p.A728D 0.47 deleterious(0) unknown(0) TCGA-DK-A6AW-01 4 23803469 23803469 C T PPARGC1A Missense_Mutation p.C726Y 0.46 tolerated(0.06) unknown(0) TCGA-DK-A6AW-01 4 24550640 24550640 A G DHX15 Silent p.I362I 0.50 TCGA-DK-A6AW-01 4 25005049 25005049 C A LGI2 3'UTR 0.54 TCGA-DK-A6AW-01 4 25370805 25370805 A C ZCCHC4 3'UTR 0.49 TCGA-DK-A6AW-01 4 25664217 25664217 G T SLC34A2 Missense_Mutation p.S32I 0.51 tolerated(0.05) benign(0.027) TCGA-DK-A6AW-01 4 265837 265837 C A ZNF732 Missense_Mutation p.R270I 0.45 tolerated(0.47) possibly_damaging(0.905) TCGA-DK-A6AW-01 4 266004 266004 C T ZNF732 Silent p.E214E 0.60 TCGA-DK-A6AW-01 4 26622236 26622236 T C TBC1D19 Missense_Mutation p.F74L 0.49 tolerated(0.66) benign(0) TCGA-DK-A6AW-01 4 26750037 26750037 C T TBC1D19 Missense_Mutation p.R442C 0.38 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 4 30725717 30725717 G T PCDH7 Silent p.V891V 0.31 TCGA-DK-A6AW-01 4 30725802 30725802 G A PCDH7 Missense_Mutation p.E920K 0.41 tolerated(0.75) probably_damaging(0.924) TCGA-DK-A6AW-01 4 3211631 3211631 G T HTT Silent p.V2123V 0.47 TCGA-DK-A6AW-01 4 36149323 36149323 C A ARAP2 Missense_Mutation p.D1016Y 0.53 deleterious(0.01) probably_damaging(0.921) TCGA-DK-A6AW-01 4 36231150 36231150 C T ARAP2 5'UTR 0.45 TCGA-DK-A6AW-01 4 38138960 38138960 C T TBC1D1 3'UTR 0.31 TCGA-DK-A6AW-01 4 38690670 38690670 A C KLF3 Missense_Mutation p.E174D 0.55 tolerated(0.43) benign(0) TCGA-DK-A6AW-01 4 38775827 38775827 G A TLR10 Missense_Mutation p.T462I 0.49 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 4 38776533 38776533 G A TLR10 Nonsense_Mutation p.Q227* 0.55 TCGA-DK-A6AW-01 4 38830407 38830407 A C TLR6 Missense_Mutation p.L230V 0.62 tolerated(0.14) benign(0.018) TCGA-DK-A6AW-01 4 38880038 38880038 G T FAM114A1 Missense_Mutation p.Q113H 0.43 deleterious(0.01) possibly_damaging(0.77) TCGA-DK-A6AW-01 4 39269686 39269686 C A WDR19 Silent p.I1111I 0.29 TCGA-DK-A6AW-01 4 39450366 39450366 C A KLB 3'UTR 0.53 TCGA-DK-A6AW-01 4 39456163 39456163 T G RPL9 Nonstop_Mutation p.*193Yext*14 0.32 TCGA-DK-A6AW-01 4 40245073 40245073 C T RHOH Missense_Mutation p.R23C 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-DK-A6AW-01 4 40440544 40440544 C T RBM47 Missense_Mutation p.E123K 0.34 tolerated(0.1) benign(0.054) TCGA-DK-A6AW-01 4 40752719 40752719 T A NSUN7 Missense_Mutation p.N3K 0.45 deleterious_low_confidence(0.05) benign(0.018) TCGA-DK-A6AW-01 4 42580379 42580379 C A ATP8A1 Silent p.L342L 0.45 TCGA-DK-A6AW-01 4 4307905 4307905 C A ZBTB49 Missense_Mutation p.F432L 0.54 deleterious(0.01) possibly_damaging(0.777) TCGA-DK-A6AW-01 4 436911 436911 C T ZNF721 Missense_Mutation p.E449K 0.44 deleterious(0.01) possibly_damaging(0.767) TCGA-DK-A6AW-01 4 44680749 44680749 G A GUF1 Missense_Mutation p.G37E 0.60 tolerated_low_confidence(0.5) benign(0) TCGA-DK-A6AW-01 4 46042864 46042864 G A GABRG1 3'UTR 0.64 TCGA-DK-A6AW-01 4 47033650 47033650 C A GABRB1 5'UTR 0.37 TCGA-DK-A6AW-01 4 47405605 47405605 C T GABRB1 Missense_Mutation p.R238C 0.47 deleterious(0) probably_damaging(0.965) TCGA-DK-A6AW-01 4 47571062 47571062 C A ATP10D Missense_Mutation p.S1021Y 0.38 deleterious(0.01) possibly_damaging(0.516) TCGA-DK-A6AW-01 4 47680039 47680039 T G CORIN Missense_Mutation p.N389H 0.40 deleterious(0.01) probably_damaging(0.933) TCGA-DK-A6AW-01 4 47938708 47938708 C T CNGA1 Silent p.Q670Q 0.44 TCGA-DK-A6AW-01 4 48490918 48490918 A C SLC10A4 Missense_Mutation p.N426H 0.48 tolerated(0.05) benign(0.006) TCGA-DK-A6AW-01 4 52863953 52863953 A C LRRC66 Missense_Mutation p.W273G 0.44 deleterious(0) probably_damaging(0.939) TCGA-DK-A6AW-01 4 52883500 52883500 T C LRRC66 Missense_Mutation p.N94D 0.39 tolerated(0.09) benign(0.104) TCGA-DK-A6AW-01 4 53324 53324 T C ZNF595 5'UTR 0.07 TCGA-DK-A6AW-01 4 53730647 53730647 A C RASL11B Missense_Mutation p.N68H 0.45 tolerated(0.06) probably_damaging(0.966) TCGA-DK-A6AW-01 4 5468469 5468469 G T STK32B Nonsense_Mutation p.E317* 0.43 TCGA-DK-A6AW-01 4 55127539 55127539 G T PDGFRA Missense_Mutation p.E109D 0.42 tolerated(0.43) benign(0.001) TCGA-DK-A6AW-01 4 55138591 55138591 A C PDGFRA Missense_Mutation p.D423A 0.43 tolerated(0.71) benign(0.011) TCGA-DK-A6AW-01 4 5564656 5564656 C A EVC2 Missense_Mutation p.E1282D 0.46 tolerated(0.07) possibly_damaging(0.601) TCGA-DK-A6AW-01 4 55948736 55948736 C T KDR Silent p.P1243P 0.34 TCGA-DK-A6AW-01 4 55962510 55962510 C A KDR Splice_Site p.X872_splice 0.48 TCGA-DK-A6AW-01 4 55970962 55970962 A C KDR Missense_Mutation p.L612W 0.55 deleterious(0) possibly_damaging(0.823) TCGA-DK-A6AW-01 4 56737393 56737393 C T EXOC1 Nonsense_Mutation p.R320* 0.48 TCGA-DK-A6AW-01 4 56878113 56878113 C T CEP135 Nonsense_Mutation p.R922* 0.29 TCGA-DK-A6AW-01 4 57368053 57368053 T G SRP72 3'UTR 0.49 TCGA-DK-A6AW-01 4 57384906 57384906 A G ARL9 Missense_Mutation p.I27V 0.45 tolerated(1) benign(0.09) TCGA-DK-A6AW-01 4 57514815 57514815 A G HOPX 3'UTR 0.55 TCGA-DK-A6AW-01 4 57797911 57797911 A C REST Missense_Mutation p.N963H 0.49 deleterious(0.01) benign(0.041) TCGA-DK-A6AW-01 4 5838608 5838608 C A CRMP1 Missense_Mutation p.G446C 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A6AW-01 4 62758519 62758519 C T LPHN3 Silent p.V474V 0.44 TCGA-DK-A6AW-01 4 62800638 62800638 G C LPHN3 Silent p.L663L 0.41 TCGA-DK-A6AW-01 4 62845404 62845404 C T LPHN3 Missense_Mutation p.R909C 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 4 66197570 66197570 C A EPHA5 Intron 0.29 TCGA-DK-A6AW-01 4 67142562 67142562 A C MIR1269A RNA 0.46 TCGA-DK-A6AW-01 4 68925166 68925166 G A TMPRSS11F Missense_Mutation p.R346W 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-DK-A6AW-01 4 68928691 68928691 C T TMPRSS11F Intron 0.49 TCGA-DK-A6AW-01 4 69327567 69327567 G A TMPRSS11E Missense_Mutation p.V14I 0.43 tolerated(0.5) benign(0.002) TCGA-DK-A6AW-01 4 69536086 69536086 T A UGT2B15 Missense_Mutation p.N84I 0.48 deleterious(0) benign(0.285) TCGA-DK-A6AW-01 4 69687995 69687995 G A UGT2B10 Missense_Mutation p.E292K 0.48 deleterious(0.01) possibly_damaging(0.891) TCGA-DK-A6AW-01 4 70155417 70155417 C T UGT2B28 Missense_Mutation p.A346V 0.08 deleterious(0) benign(0.008) TCGA-DK-A6AW-01 4 70346409 70346409 T C UGT2B4 Silent p.K510K 0.46 TCGA-DK-A6AW-01 4 70455266 70455266 C A UGT2A1 Nonsense_Mutation p.G636* 0.49 TCGA-DK-A6AW-01 4 70513237 70513237 C T UGT2A1 Silent p.E42E 0.53 TCGA-DK-A6AW-01 4 70592899 70592899 C A SULT1B1 Missense_Mutation p.K266N 0.38 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 4 70810685 70810685 G T CSN1S1 Nonsense_Mutation p.E174* 0.46 TCGA-DK-A6AW-01 4 71510019 71510019 C A ENAM Missense_Mutation p.S959Y 0.44 deleterious(0) probably_damaging(0.941) TCGA-DK-A6AW-01 4 71640948 71640948 G T RUFY3 Missense_Mutation p.L274F 0.44 deleterious(0) probably_damaging(0.929) TCGA-DK-A6AW-01 4 71891572 71891572 G A DCK Missense_Mutation p.E197K 0.48 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 4 71892391 71892391 C T DCK Silent p.F225F 0.50 TCGA-DK-A6AW-01 4 73012822 73012822 G T NPFFR2 Nonsense_Mutation p.E288* 0.48 TCGA-DK-A6AW-01 4 73205315 73205315 C T ADAMTS3 Missense_Mutation p.E253K 0.46 tolerated(0.62) benign(0.002) TCGA-DK-A6AW-01 4 74027009 74027009 G A ANKRD17 Missense_Mutation p.R202W 0.36 benign(0.265) TCGA-DK-A6AW-01 4 74347528 74347528 C A AFM Missense_Mutation p.F12L 0.48 tolerated(0.52) unknown(0) TCGA-DK-A6AW-01 4 74964335 74964335 G A CXCL2 Silent p.I97I 0.40 TCGA-DK-A6AW-01 4 7668894 7668894 G A SORCS2 Missense_Mutation p.R372Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 4 76891496 76891496 G A SDAD1 Silent p.N283N 0.41 TCGA-DK-A6AW-01 4 77003171 77003171 G T ART3 Missense_Mutation p.M88I 0.48 tolerated(0.19) benign(0.009) TCGA-DK-A6AW-01 4 77357243 77357243 C T SHROOM3 Missense_Mutation p.A13V 0.47 deleterious(0.01) benign(0.398) TCGA-DK-A6AW-01 4 77817258 77817258 C A SOWAHB Missense_Mutation p.R582I 0.38 deleterious(0) benign(0.308) TCGA-DK-A6AW-01 4 78532274 78532274 T G CXCL13 3'UTR 0.46 TCGA-DK-A6AW-01 4 79366809 79366809 T G FRAS1 Missense_Mutation p.F1933L 0.53 possibly_damaging(0.452) TCGA-DK-A6AW-01 4 79763625 79763625 G T BMP2K Nonsense_Mutation p.E164* 0.43 TCGA-DK-A6AW-01 4 80328324 80328324 T C GK2 Missense_Mutation p.D344G 0.48 deleterious(0) benign(0.361) TCGA-DK-A6AW-01 4 81207815 81207815 C T FGF5 Missense_Mutation p.R266C 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A6AW-01 4 81974799 81974799 A G BMP3 3'UTR 0.55 TCGA-DK-A6AW-01 4 82088363 82088363 C A PRKG2 Missense_Mutation p.K288N 0.27 deleterious(0.02) possibly_damaging(0.719) TCGA-DK-A6AW-01 4 8221101 8221101 C T SH3TC1 Missense_Mutation p.S319L 0.58 tolerated(0.08) benign(0.048) TCGA-DK-A6AW-01 4 8407705 8407705 G A ACOX3 Silent p.L251L 0.45 TCGA-DK-A6AW-01 4 85937 85937 C T Z95704.2 RNA 0.55 TCGA-DK-A6AW-01 4 86916303 86916303 G A ARHGAP24 Missense_Mutation p.R499Q 0.50 tolerated(0.2) probably_damaging(0.99) TCGA-DK-A6AW-01 4 87685793 87685793 T G PTPN13 Silent p.T1355T 0.47 TCGA-DK-A6AW-01 4 87769896 87769896 G A SLC10A6 Missense_Mutation p.L125F 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 4 88732610 88732610 G T IBSP Nonsense_Mutation p.E168* 0.42 TCGA-DK-A6AW-01 4 88766655 88766655 G A MEPE Missense_Mutation p.S212N 0.39 tolerated(0.14) possibly_damaging(0.532) TCGA-DK-A6AW-01 4 89060954 89060954 G A ABCG2 Missense_Mutation p.S65L 0.36 tolerated(0.4) benign(0.002) TCGA-DK-A6AW-01 4 89061060 89061060 C A ABCG2 Missense_Mutation p.A30S 0.38 tolerated(0.28) benign(0.001) TCGA-DK-A6AW-01 4 89345081 89345081 T C HERC6 Missense_Mutation p.F595L 0.64 deleterious(0.05) benign(0.437) TCGA-DK-A6AW-01 4 89410460 89410460 G T HERC5 Missense_Mutation p.E702D 0.46 deleterious(0.03) probably_damaging(0.967) TCGA-DK-A6AW-01 4 89414216 89414216 C A HERC5 Missense_Mutation p.F729L 0.49 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 4 89426829 89426829 C A HERC5 Missense_Mutation p.L959I 0.44 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 4 89702486 89702486 C A FAM13A Nonsense_Mutation p.E430* 0.13 TCGA-DK-A6AW-01 4 89978156 89978156 G A FAM13A 5'UTR 0.37 TCGA-DK-A6AW-01 4 90034644 90034644 T G TIGD2 Missense_Mutation p.I173M 0.46 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 4 91234124 91234124 G T CCSER1 Missense_Mutation p.D479Y 0.32 deleterious(0) probably_damaging(0.935) TCGA-DK-A6AW-01 4 94344113 94344113 C A GRID2 Silent p.V513V 0.39 TCGA-DK-A6AW-01 4 95210848 95210848 C A SMARCAD1 3'UTR 0.54 TCGA-DK-A6AW-01 4 99397363 99397363 A C TSPAN5 Missense_Mutation p.F240V 0.20 tolerated(0.18) benign(0.41) TCGA-DK-A6AW-01 5 100238673 100238673 G T ST8SIA4 5'UTR 0.39 TCGA-DK-A6AW-01 5 102433155 102433155 G A GIN1 Nonsense_Mutation p.R291* 0.49 TCGA-DK-A6AW-01 5 102520410 102520410 G T PPIP5K2 Missense_Mutation p.R1045I 0.42 deleterious_low_confidence(0.03) benign(0.012) TCGA-DK-A6AW-01 5 1036492 1036492 C T NKD2 Silent p.F260F 0.52 TCGA-DK-A6AW-01 5 108133970 108133970 G T FER Missense_Mutation p.K29N 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 108171429 108171429 G T FER Missense_Mutation p.E134D 0.43 tolerated(0.12) benign(0.005) TCGA-DK-A6AW-01 5 108523373 108523373 C T FER 3'UTR 0.53 TCGA-DK-A6AW-01 5 110409133 110409133 T C TSLP Intron 0.38 TCGA-DK-A6AW-01 5 110409280 110409280 A C TSLP Missense_Mutation p.E96D 0.47 deleterious(0.03) possibly_damaging(0.887) TCGA-DK-A6AW-01 5 11117668 11117668 G A CTNND2 Missense_Mutation p.S724L 0.46 deleterious(0) possibly_damaging(0.816) TCGA-DK-A6AW-01 5 112173588 112173588 C T APC Missense_Mutation p.A766V 0.55 probably_damaging(0.982) TCGA-DK-A6AW-01 5 112176390 112176390 C T APC Missense_Mutation p.A1700V 0.35 benign(0.012) TCGA-DK-A6AW-01 5 112178776 112178776 A G APC Silent p.T2495T 0.45 TCGA-DK-A6AW-01 5 112769636 112769636 C T TSSK1B Missense_Mutation p.E301K 0.34 tolerated_low_confidence(0.25) benign(0.003) TCGA-DK-A6AW-01 5 112896797 112896797 G A YTHDC2 Missense_Mutation p.G746E 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 113831808 113831808 C T KCNN2 Missense_Mutation p.R557W 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-A6AW-01 5 114462409 114462409 G T TRIM36 Missense_Mutation p.L660I 0.33 tolerated(0.28) benign(0.099) TCGA-DK-A6AW-01 5 114860257 114860257 G A FEM1C Silent p.I534I 0.44 TCGA-DK-A6AW-01 5 115320353 115320353 G A AQPEP Missense_Mutation p.A309T 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 118433708 118433708 G A DMXL1 Missense_Mutation p.G41E 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 5 118484845 118484845 C A DMXL1 Missense_Mutation p.S1108Y 0.51 tolerated(0.24) benign(0.015) TCGA-DK-A6AW-01 5 118487671 118487671 C T DMXL1 Nonsense_Mutation p.R1548* 0.37 TCGA-DK-A6AW-01 5 121409733 121409733 C T LOX Missense_Mutation p.R337Q 0.47 deleterious(0.02) possibly_damaging(0.669) TCGA-DK-A6AW-01 5 121799256 121799256 G T SNCAIP 3'UTR 0.48 TCGA-DK-A6AW-01 5 122725784 122725784 C A CEP120 Missense_Mutation p.K363N 0.38 tolerated(0.2) benign(0.002) TCGA-DK-A6AW-01 5 126874763 126874763 G A PRRC1 Missense_Mutation p.R318Q 0.11 deleterious(0.04) possibly_damaging(0.553) TCGA-DK-A6AW-01 5 126883688 126883688 C T PRRC1 Intron 0.41 TCGA-DK-A6AW-01 5 126993382 126993382 C T CTXN3 Nonsense_Mutation p.R57* 0.37 TCGA-DK-A6AW-01 5 128326057 128326057 A C SLC27A6 Missense_Mutation p.K290T 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 128351714 128351714 C A SLC27A6 Missense_Mutation p.S369Y 0.43 tolerated(0.22) benign(0.014) TCGA-DK-A6AW-01 5 128887579 128887579 G T ADAMTS19 Missense_Mutation p.D445Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 5 128994396 128994396 C A ADAMTS19 Silent p.I791I 0.44 TCGA-DK-A6AW-01 5 129019956 129019956 T A ADAMTS19 Silent p.T930T 0.52 TCGA-DK-A6AW-01 5 129521008 129521008 G A CHSY3 Missense_Mutation p.E725K 0.34 tolerated(0.76) benign(0.001) TCGA-DK-A6AW-01 5 130764701 130764701 G A CTC-432M15.3 Silent p.L1608L 0.45 TCGA-DK-A6AW-01 5 130846055 130846055 G A RAPGEF6 Nonsense_Mutation p.R253* 0.47 TCGA-DK-A6AW-01 5 131007447 131007447 T G FNIP1 Missense_Mutation p.K897T 0.44 tolerated(0.14) possibly_damaging(0.447) TCGA-DK-A6AW-01 5 131007604 131007604 C T FNIP1 Missense_Mutation p.E845K 0.41 tolerated(0.1) probably_damaging(0.997) TCGA-DK-A6AW-01 5 131007834 131007834 C T FNIP1 Missense_Mutation p.R768Q 0.36 tolerated(0.12) probably_damaging(0.997) TCGA-DK-A6AW-01 5 131321146 131321146 C T ACSL6 Silent p.P290P 0.38 TCGA-DK-A6AW-01 5 131877547 131877547 C T IL5 Missense_Mutation p.E121K 0.52 tolerated(0.07) probably_damaging(0.997) TCGA-DK-A6AW-01 5 132160067 132160067 C A SHROOM1 Missense_Mutation p.R429I 0.52 deleterious(0) possibly_damaging(0.481) TCGA-DK-A6AW-01 5 133496722 133496722 C A SKP1 Nonsense_Mutation p.E91* 0.30 TCGA-DK-A6AW-01 5 134782764 134782764 G A C5orf20 Missense_Mutation p.S12L 0.45 tolerated_low_confidence(1) possibly_damaging(0.519) TCGA-DK-A6AW-01 5 137222946 137222946 C T MYOT Nonsense_Mutation p.R457* 0.42 TCGA-DK-A6AW-01 5 137451290 137451290 G T NME5 3'UTR 0.47 TCGA-DK-A6AW-01 5 13776794 13776794 C A DNAH5 Missense_Mutation p.D3043Y 0.36 probably_damaging(0.961) TCGA-DK-A6AW-01 5 137771353 137771353 C T KDM3B Silent p.T1750T 0.14 TCGA-DK-A6AW-01 5 13811853 13811853 C T DNAH5 Missense_Mutation p.R2437H 0.43 possibly_damaging(0.522) TCGA-DK-A6AW-01 5 138208713 138208713 C A LRRTM2 Nonsense_Mutation p.E513* 0.42 TCGA-DK-A6AW-01 5 138209469 138209469 T C LRRTM2 Missense_Mutation p.T261A 0.05 deleterious(0.02) benign(0.257) TCGA-DK-A6AW-01 5 139197112 139197112 G A PSD2 Missense_Mutation p.D355N 0.43 tolerated(0.2) possibly_damaging(0.881) TCGA-DK-A6AW-01 5 139217339 139217339 G A PSD2 Missense_Mutation p.D599N 0.51 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 5 13928280 13928280 C A DNAH5 Missense_Mutation p.R67I 0.59 benign(0.308) TCGA-DK-A6AW-01 5 139494494 139494494 T G PURA Missense_Mutation p.F243C 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 139508204 139508204 T G IGIP Missense_Mutation p.F48C 0.53 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-DK-A6AW-01 5 140073231 140073231 T G HARS2 Missense_Mutation p.F55C 0.44 deleterious(0.01) probably_damaging(0.928) TCGA-DK-A6AW-01 5 140175308 140175308 G A PCDHA2 Silent p.E253E 0.46 TCGA-DK-A6AW-01 5 140186715 140186715 G T PCDHA4 5'Flank 0.44 TCGA-DK-A6AW-01 5 140208433 140208433 G A PCDHA6 Missense_Mutation p.E253K 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-A6AW-01 5 140208727 140208727 G T PCDHA6 Missense_Mutation p.A351S 0.41 tolerated_low_confidence(0.47) benign(0.002) TCGA-DK-A6AW-01 5 140241226 140241226 G T AC005609.1 3'UTR 0.50 TCGA-DK-A6AW-01 5 140256125 140256125 G A PCDHA12 Silent p.S356S 0.46 TCGA-DK-A6AW-01 5 140256447 140256447 G A PCDHA12 Missense_Mutation p.V464M 0.49 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-DK-A6AW-01 5 140261940 140261940 C A PCDHA13 Silent p.G29G 0.47 TCGA-DK-A6AW-01 5 140262328 140262328 G A PCDHA13 Missense_Mutation p.D159N 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A6AW-01 5 140389390 140389390 A C PCDHAC1 Missense_Mutation p.Q920H 0.42 deleterious(0.02) benign(0.179) TCGA-DK-A6AW-01 5 140481581 140481581 G A PCDHB3 Missense_Mutation p.A450T 0.43 tolerated_low_confidence(0.38) benign(0.001) TCGA-DK-A6AW-01 5 140502683 140502683 G A PCDHB4 Missense_Mutation p.R368Q 0.46 deleterious_low_confidence(0.03) benign(0.171) TCGA-DK-A6AW-01 5 140530834 140530834 C T PCDHB6 Silent p.V332V 0.48 TCGA-DK-A6AW-01 5 140537322 140537322 G A PCDHB17 Silent p.P582P 0.29 TCGA-DK-A6AW-01 5 140553778 140553778 C A PCDHB7 Silent p.T454T 0.42 TCGA-DK-A6AW-01 5 140554144 140554144 G T PCDHB7 Missense_Mutation p.L576F 0.49 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-DK-A6AW-01 5 140554382 140554382 G A PCDHB7 Missense_Mutation p.A656T 0.23 deleterious_low_confidence(0.01) benign(0.15) TCGA-DK-A6AW-01 5 140563843 140563843 C T PCDHB16 Missense_Mutation p.A570V 0.42 tolerated_low_confidence(0.05) benign(0.02) TCGA-DK-A6AW-01 5 140589001 140589001 G A PCDHB12 Silent p.P174P 0.39 TCGA-DK-A6AW-01 5 140589666 140589666 C T PCDHB12 Missense_Mutation p.S396L 0.44 deleterious_low_confidence(0) benign(0.344) TCGA-DK-A6AW-01 5 140594619 140594619 C T PCDHB13 Silent p.L308L 0.48 TCGA-DK-A6AW-01 5 140626991 140626991 C T PCDHB15 Silent p.F615F 0.28 TCGA-DK-A6AW-01 5 140682571 140682571 C T SLC25A2 Missense_Mutation p.E288K 0.28 deleterious(0) probably_damaging(0.98) TCGA-DK-A6AW-01 5 140683399 140683399 C T SLC25A2 Missense_Mutation p.D12N 0.32 tolerated(0.1) benign(0.26) TCGA-DK-A6AW-01 5 140710628 140710628 T G PCDHGA1 Missense_Mutation p.I126S 0.54 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-DK-A6AW-01 5 140724216 140724216 G T PCDHGA3 Nonsense_Mutation p.E206* 0.44 TCGA-DK-A6AW-01 5 140730187 140730187 C T PCDHGB1 Silent p.I120I 0.52 TCGA-DK-A6AW-01 5 140731012 140731012 G T PCDHGB1 Missense_Mutation p.K395N 0.48 tolerated(0.57) probably_damaging(1) TCGA-DK-A6AW-01 5 140750458 140750458 C T PCDHGB3 Missense_Mutation p.S166L 0.49 deleterious(0) probably_damaging(0.994) TCGA-DK-A6AW-01 5 140753782 140753782 C T PCDHGA6 Silent p.F44F 0.53 TCGA-DK-A6AW-01 5 140762917 140762917 C T PCDHGA7 Missense_Mutation p.R151W 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 140768713 140768713 C T PCDHGB4 Missense_Mutation p.T421M 0.45 tolerated(0.07) possibly_damaging(0.473) TCGA-DK-A6AW-01 5 140792860 140792860 C T PCDHGA10 Missense_Mutation p.P40S 0.47 tolerated_low_confidence(0.09) possibly_damaging(0.63) TCGA-DK-A6AW-01 5 140799162 140799162 C T PCDHGB7 Missense_Mutation p.P579L 0.50 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 5 140810432 140810432 C T PCDHGA12 Missense_Mutation p.P36S 0.39 tolerated_low_confidence(0.08) benign(0.072) TCGA-DK-A6AW-01 5 141028579 141028579 C T FCHSD1 Missense_Mutation p.R174Q 0.46 deleterious(0.01) benign(0.428) TCGA-DK-A6AW-01 5 141336790 141336790 A C PCDH12 Missense_Mutation p.F209L 0.45 tolerated(0.29) benign(0.004) TCGA-DK-A6AW-01 5 1416253 1416253 C T SLC6A3 Missense_Mutation p.A331T 0.37 tolerated(0.05) benign(0.409) TCGA-DK-A6AW-01 5 142150387 142150387 A G ARHGAP26 Missense_Mutation p.T21A 0.44 deleterious(0) benign(0.217) TCGA-DK-A6AW-01 5 142283103 142283103 A C ARHGAP26 Splice_Site p.X235_splice 0.33 TCGA-DK-A6AW-01 5 142680255 142680255 A G NR3C1 Silent p.N515N 0.46 TCGA-DK-A6AW-01 5 143586884 143586884 G T KCTD16 Nonsense_Mutation p.E203* 0.44 TCGA-DK-A6AW-01 5 145439781 145439781 C T SH3RF2 Silent p.I636I 0.45 TCGA-DK-A6AW-01 5 145598618 145598618 G T RBM27 Nonsense_Mutation p.E44* 0.49 TCGA-DK-A6AW-01 5 145631373 145631373 G A RBM27 Missense_Mutation p.R460Q 0.50 tolerated_low_confidence(0.45) benign(0.053) TCGA-DK-A6AW-01 5 145665548 145665548 C T RBM27 Silent p.D1046D 0.36 TCGA-DK-A6AW-01 5 14602291 14602291 G T FAM105A Splice_Site p.X117_splice 0.62 TCGA-DK-A6AW-01 5 147470735 147470735 G T SPINK5 Nonsense_Mutation p.E204* 0.50 TCGA-DK-A6AW-01 5 149216125 149216125 G A PPARGC1B Missense_Mutation p.V703I 0.49 tolerated(0.05) benign(0.001) TCGA-DK-A6AW-01 5 149310679 149310679 C T PDE6A Missense_Mutation p.R257Q 0.49 deleterious(0.05) probably_damaging(0.992) TCGA-DK-A6AW-01 5 149602256 149602256 G A CAMK2A 3'UTR 0.42 TCGA-DK-A6AW-01 5 149669141 149669141 G A CAMK2A Silent p.F16F 0.51 TCGA-DK-A6AW-01 5 150051985 150051985 G A MYOZ3 Missense_Mutation p.E170K 0.32 deleterious(0.03) probably_damaging(0.967) TCGA-DK-A6AW-01 5 150322125 150322125 G A ZNF300P1 RNA 0.27 TCGA-DK-A6AW-01 5 150411949 150411949 G A TNIP1 Intron 0.58 TCGA-DK-A6AW-01 5 153432575 153432575 C T MFAP3 Missense_Mutation p.R131C 0.43 tolerated(0.12) possibly_damaging(0.863) TCGA-DK-A6AW-01 5 156649948 156649948 G A ITK Missense_Mutation p.A191T 0.45 tolerated(0.7) benign(0.002) TCGA-DK-A6AW-01 5 156770215 156770215 C T FNDC9 Silent p.Q110Q 0.46 TCGA-DK-A6AW-01 5 158590012 158590012 C A RNF145 Missense_Mutation p.M429I 0.43 tolerated(0.1) benign(0.18) TCGA-DK-A6AW-01 5 159463770 159463770 C T TTC1 Missense_Mutation p.S155L 0.32 deleterious(0.03) possibly_damaging(0.733) TCGA-DK-A6AW-01 5 159626026 159626026 C A FABP6 Intron 0.40 TCGA-DK-A6AW-01 5 159840984 159840984 A C SLU7 Missense_Mutation p.N109K 0.41 tolerated(0.36) benign(0.001) TCGA-DK-A6AW-01 5 160753387 160753387 G A GABRB2 Silent p.F393F 0.49 TCGA-DK-A6AW-01 5 160761830 160761830 A G GABRB2 Missense_Mutation p.I254T 0.18 tolerated(0.24) possibly_damaging(0.75) TCGA-DK-A6AW-01 5 160763758 160763758 T C GABRB2 Missense_Mutation p.D187G 0.55 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 161317999 161317999 C A GABRA1 Missense_Mutation p.L267I 0.43 deleterious(0.02) benign(0.144) TCGA-DK-A6AW-01 5 161324361 161324361 A C GABRA1 Missense_Mutation p.N435T 0.51 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 5 162880911 162880911 C A NUDCD2 3'UTR 0.58 TCGA-DK-A6AW-01 5 162945371 162945371 T G MAT2B 3'UTR 0.62 TCGA-DK-A6AW-01 5 167553931 167553931 A G TENM2 Silent p.E794E 0.30 TCGA-DK-A6AW-01 5 167933179 167933179 T G RARS Missense_Mutation p.I404S 0.10 deleterious(0) possibly_damaging(0.632) TCGA-DK-A6AW-01 5 167991045 167991045 A C PANK3 Missense_Mutation p.L221V 0.47 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 5 169662010 169662010 G A C5orf58 Silent p.K31K 0.64 TCGA-DK-A6AW-01 5 169810792 169810792 A C KCNMB1 Missense_Mutation p.L66R 0.36 tolerated(0.05) probably_damaging(0.983) TCGA-DK-A6AW-01 5 170351478 170351478 C T RANBP17 Silent p.F464F 0.29 TCGA-DK-A6AW-01 5 170833420 170833420 G A NPM1 Intron 0.45 TCGA-DK-A6AW-01 5 171614993 171614993 T G STK10 Missense_Mutation p.R18S 0.57 tolerated(0.14) benign(0.132) TCGA-DK-A6AW-01 5 171789755 171789755 G A SH3PXD2B Silent p.I182I 0.56 TCGA-DK-A6AW-01 5 172336722 172336722 G A ERGIC1 Missense_Mutation p.D70N 0.33 tolerated(0.45) benign(0.006) TCGA-DK-A6AW-01 5 174870036 174870036 G A DRD1 Missense_Mutation p.R23C 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 5 174943651 174943651 G T SFXN1 Missense_Mutation p.K253N 0.37 deleterious(0.01) benign(0.371) TCGA-DK-A6AW-01 5 175110437 175110437 C T HRH2 Silent p.L67L 0.48 TCGA-DK-A6AW-01 5 175111183 175111183 C A HRH2 Missense_Mutation p.S316Y 0.49 tolerated(0.16) benign(0.169) TCGA-DK-A6AW-01 5 175958584 175958584 C T RNF44 Silent p.T115T 0.42 TCGA-DK-A6AW-01 5 176019724 176019724 C T CDHR2 Silent p.S1245S 0.39 TCGA-DK-A6AW-01 5 176731635 176731635 C A PRELID1 Silent p.V34V 0.62 TCGA-DK-A6AW-01 5 176910877 176910877 G A PDLIM7 Silent p.F426F 0.53 TCGA-DK-A6AW-01 5 177632994 177632995 - CAGC HNRNPAB Frame_Shift_Ins p.V124Qfs*19 0.32 TCGA-DK-A6AW-01 5 177658431 177658431 G A PHYKPL Silent p.I51I 0.53 TCGA-DK-A6AW-01 5 178030726 178030726 C A CLK4 Missense_Mutation p.E446D 0.43 tolerated(0.25) benign(0.027) TCGA-DK-A6AW-01 5 178139833 178139833 G T ZNF354A Missense_Mutation p.S349Y 0.45 deleterious(0.01) possibly_damaging(0.498) TCGA-DK-A6AW-01 5 178310659 178310659 A G ZNF354B Silent p.R402R 0.38 TCGA-DK-A6AW-01 5 178310672 178310672 G T ZNF354B Nonsense_Mutation p.E407* 0.43 TCGA-DK-A6AW-01 5 178369780 178369780 C T ZNF454 5'UTR 0.34 TCGA-DK-A6AW-01 5 178506145 178506145 C A ZNF354C Missense_Mutation p.H238N 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A6AW-01 5 178506224 178506224 G T ZNF354C Missense_Mutation p.R264I 0.45 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 178553052 178553052 C T ADAMTS2 Silent p.S899S 0.47 TCGA-DK-A6AW-01 5 179226094 179226094 G A MGAT4B Missense_Mutation p.R408W 0.43 tolerated(0.07) benign(0.042) TCGA-DK-A6AW-01 5 179743987 179743987 G A GFPT2 Missense_Mutation p.R344W 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 180041089 180041089 G T FLT4 Missense_Mutation p.L1104I 0.41 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 5 180475237 180475237 C A BTNL9 Missense_Mutation p.F140L 0.47 deleterious(0) probably_damaging(0.913) TCGA-DK-A6AW-01 5 180662022 180662022 A G TRIM41 3'UTR 0.50 TCGA-DK-A6AW-01 5 19483440 19483440 C T CDH18 Missense_Mutation p.A618T 0.44 deleterious(0.02) probably_damaging(0.99) TCGA-DK-A6AW-01 5 19571703 19571703 G T CDH18 Missense_Mutation p.T413N 0.42 tolerated(0.13) benign(0.032) TCGA-DK-A6AW-01 5 22142614 22142614 G A CDH12 Intron 0.47 TCGA-DK-A6AW-01 5 24537738 24537738 A C CDH10 Missense_Mutation p.L93V 0.35 deleterious(0.02) probably_damaging(0.937) TCGA-DK-A6AW-01 5 24593507 24593507 C T CDH10 Silent p.V31V 0.50 TCGA-DK-A6AW-01 5 31323144 31323144 G A CDH6 Missense_Mutation p.R701Q 0.48 tolerated(0.1) benign(0.011) TCGA-DK-A6AW-01 5 31323563 31323563 C T CDH6 3'UTR 0.41 TCGA-DK-A6AW-01 5 32108240 32108240 G T PDZD2 Nonstop_Mutation p.*2840Lext*14 0.59 TCGA-DK-A6AW-01 5 32239142 32239142 G A MTMR12 Missense_Mutation p.R437C 0.48 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 33445453 33445453 A C TARS Missense_Mutation p.Q27H 0.26 tolerated(0.17) benign(0) TCGA-DK-A6AW-01 5 33467054 33467054 C T TARS Nonsense_Mutation p.R696* 0.47 TCGA-DK-A6AW-01 5 33951713 33951713 C T SLC45A2 Missense_Mutation p.E368K 0.43 tolerated(0.29) probably_damaging(0.99) TCGA-DK-A6AW-01 5 34923328 34923328 C T BRIX1 Missense_Mutation p.R218W 0.49 deleterious(0.02) possibly_damaging(0.751) TCGA-DK-A6AW-01 5 34998865 34998865 G A AGXT2 Missense_Mutation p.R502C 0.51 deleterious(0.03) benign(0.005) TCGA-DK-A6AW-01 5 35644613 35644613 T G SPEF2 Missense_Mutation p.F191V 0.38 tolerated(0.51) benign(0.014) TCGA-DK-A6AW-01 5 35691333 35691333 T G SPEF2 Silent p.T573T 0.42 TCGA-DK-A6AW-01 5 35860997 35860997 C T IL7R Silent p.C42C 0.40 TCGA-DK-A6AW-01 5 35921153 35921153 C T CAPSL Missense_Mutation p.D24N 0.49 tolerated(0.07) benign(0.127) TCGA-DK-A6AW-01 5 35954498 35954498 C T UGT3A1 Missense_Mutation p.D460N 0.62 tolerated(0.36) benign(0.05) TCGA-DK-A6AW-01 5 36255644 36255644 C A RANBP3L Nonsense_Mutation p.E343* 0.38 TCGA-DK-A6AW-01 5 37059083 37059083 C T NIPBL Missense_Mutation p.R2501W 0.37 deleterious(0) possibly_damaging(0.727) TCGA-DK-A6AW-01 5 37179534 37179534 C A C5orf42 Nonsense_Mutation p.E1917* 0.49 TCGA-DK-A6AW-01 5 38481549 38481549 G T LIFR 3'UTR 0.57 TCGA-DK-A6AW-01 5 38489298 38489298 C T LIFR Silent p.S739S 0.47 TCGA-DK-A6AW-01 5 38506679 38506679 A C LIFR Missense_Mutation p.I349M 0.50 tolerated(0.07) benign(0.367) TCGA-DK-A6AW-01 5 38933236 38933236 C T OSMR Missense_Mutation p.S877F 0.41 tolerated(0.06) benign(0.051) TCGA-DK-A6AW-01 5 38954947 38954947 C T RICTOR Missense_Mutation p.V876I 0.48 tolerated(0.06) probably_damaging(0.996) TCGA-DK-A6AW-01 5 39202524 39202524 A C FYB Missense_Mutation p.F190C 0.51 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 39202753 39202753 C T FYB Missense_Mutation p.E114K 0.44 deleterious(0.05) possibly_damaging(0.642) TCGA-DK-A6AW-01 5 39311416 39311416 C T C9 Missense_Mutation p.D312N 0.42 tolerated(0.17) benign(0.344) TCGA-DK-A6AW-01 5 422862 422862 A C AHRR Missense_Mutation p.N158H 0.55 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 5 42711367 42711367 A G GHR Missense_Mutation p.Y226C 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 5 43246106 43246106 C T NIM1K Nonsense_Mutation p.R77* 0.42 TCGA-DK-A6AW-01 5 5182252 5182252 G A ADAMTS16 Silent p.S199S 0.50 TCGA-DK-A6AW-01 5 52216260 52216260 C T ITGA1 Nonsense_Mutation p.R752* 0.50 TCGA-DK-A6AW-01 5 52404428 52404428 G A MOCS2 5'UTR 0.57 TCGA-DK-A6AW-01 5 52781666 52781666 A G FST Intron 0.27 TCGA-DK-A6AW-01 5 53409210 53409210 C T ARL15 Missense_Mutation p.R95H 0.36 tolerated(0.17) benign(0.32) TCGA-DK-A6AW-01 5 53751815 53751815 G A HSPB3 Missense_Mutation p.E66K 0.51 tolerated(0.19) benign(0.016) TCGA-DK-A6AW-01 5 53814730 53814730 C T SNX18 Silent p.F316F 0.54 TCGA-DK-A6AW-01 5 54320181 54320181 T G GZMK Missense_Mutation p.F11V 0.44 tolerated(0.14) benign(0.006) TCGA-DK-A6AW-01 5 54456202 54456202 C A GPX8 Missense_Mutation p.S61Y 0.46 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 5 54563624 54563624 C A DHX29 Missense_Mutation p.E1107D 0.46 tolerated(0.28) benign(0.267) TCGA-DK-A6AW-01 5 54566508 54566508 G T DHX29 Missense_Mutation p.S964Y 0.33 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 5 5460955 5460955 A C KIAA0947 Missense_Mutation p.K503T 0.42 tolerated(0.47) benign(0.023) TCGA-DK-A6AW-01 5 5463178 5463178 C T KIAA0947 Missense_Mutation p.S1244L 0.56 tolerated(0.1) benign(0.014) TCGA-DK-A6AW-01 5 5464165 5464165 C T KIAA0947 Missense_Mutation p.S1573L 0.30 tolerated(0.17) benign(0.021) TCGA-DK-A6AW-01 5 55168261 55168261 T A IL31RA Missense_Mutation p.W146R 0.41 deleterious(0.02) possibly_damaging(0.656) TCGA-DK-A6AW-01 5 55259989 55259989 C A IL6ST Missense_Mutation p.D215Y 0.40 deleterious(0) probably_damaging(0.947) TCGA-DK-A6AW-01 5 55395877 55395877 C T ANKRD55 3'UTR 0.33 TCGA-DK-A6AW-01 5 56178162 56178162 C T MAP3K1 Silent p.V1045V 0.48 TCGA-DK-A6AW-01 5 56189412 56189412 C T MAP3K1 Nonsense_Mutation p.R1482* 0.42 TCGA-DK-A6AW-01 5 56542208 56542208 G A GPBP1 Missense_Mutation p.G194E 0.41 tolerated(0.1) benign(0.082) TCGA-DK-A6AW-01 5 61649119 61649119 T G KIF2A Missense_Mutation p.C159G 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 64886077 64886077 C T TRIM23 3'UTR 0.51 TCGA-DK-A6AW-01 5 64890416 64890416 C A TRIM23 Nonsense_Mutation p.E493* 0.45 TCGA-DK-A6AW-01 5 64968101 64968101 C T SGTB Missense_Mutation p.S230N 0.44 tolerated(1) benign(0.003) TCGA-DK-A6AW-01 5 6623340 6623340 C T NSUN2 Missense_Mutation p.R175Q 0.44 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 5 6632729 6632729 T G NSUN2 Missense_Mutation p.R79S 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 5 66460410 66460410 C T MAST4 Silent p.I1801I 0.45 TCGA-DK-A6AW-01 5 6737711 6737711 G A PAPD7 Missense_Mutation p.E19K 0.27 tolerated(0.18) possibly_damaging(0.784) TCGA-DK-A6AW-01 5 67586647 67586647 G T PIK3R1 Intron 0.31 TCGA-DK-A6AW-01 5 678138 678138 C A TPPP Missense_Mutation p.R13M 0.17 tolerated_low_confidence(0.15) benign(0.002) TCGA-DK-A6AW-01 5 68473540 68473540 C A CCNB1 3'UTR 0.56 TCGA-DK-A6AW-01 5 68505630 68505630 G T CENPH 3'UTR 0.48 TCGA-DK-A6AW-01 5 68572431 68572431 G A CDK7 Missense_Mutation p.R309K 0.37 tolerated(0.6) possibly_damaging(0.886) TCGA-DK-A6AW-01 5 70793223 70793223 G A BDP1 Silent p.K642K 0.51 TCGA-DK-A6AW-01 5 70900209 70900209 C T MCCC2 Nonsense_Mutation p.R180* 0.11 TCGA-DK-A6AW-01 5 71482445 71482445 G A MAP1B Missense_Mutation p.R125H 0.46 unknown(0) TCGA-DK-A6AW-01 5 71490855 71490855 G A MAP1B Missense_Mutation p.R558H 0.48 unknown(0) TCGA-DK-A6AW-01 5 73930721 73930721 G A ENC1 Silent p.S530S 0.51 TCGA-DK-A6AW-01 5 74324903 74324903 G A GCNT4 Silent p.I320I 0.53 TCGA-DK-A6AW-01 5 74647037 74647037 G T HMGCR Missense_Mutation p.K362N 0.41 tolerated(0.43) benign(0.131) TCGA-DK-A6AW-01 5 74651295 74651295 G A HMGCR Missense_Mutation p.E610K 0.52 tolerated(0.09) benign(0.151) TCGA-DK-A6AW-01 5 74886303 74886303 T G POLK Intron 0.48 TCGA-DK-A6AW-01 5 74892399 74892399 C T POLK Silent p.C627C 0.44 TCGA-DK-A6AW-01 5 74892605 74892605 C A POLK Missense_Mutation p.S696Y 0.39 deleterious(0.01) benign(0.212) TCGA-DK-A6AW-01 5 7520855 7520855 C T ADCY2 Missense_Mutation p.S138L 0.38 deleterious(0) benign(0.031) TCGA-DK-A6AW-01 5 75505591 75505591 G A SV2C Silent p.S264S 0.37 TCGA-DK-A6AW-01 5 75621215 75621215 C T SV2C Missense_Mutation p.A676V 0.57 deleterious(0) possibly_damaging(0.907) TCGA-DK-A6AW-01 5 75886357 75886357 T G IQGAP2 Nonsense_Mutation p.Y255* 0.50 TCGA-DK-A6AW-01 5 75996951 75996951 C T IQGAP2 Missense_Mutation p.A1473V 0.34 tolerated(0.22) benign(0.003) TCGA-DK-A6AW-01 5 76029317 76029317 C T F2R Silent p.L423L 0.38 TCGA-DK-A6AW-01 5 76645262 76645262 G A PDE8B Missense_Mutation p.E299K 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 5 76645303 76645303 A G PDE8B Silent p.K312K 0.48 TCGA-DK-A6AW-01 5 77521396 77521396 T C AP3B1 Silent p.V191V 0.32 TCGA-DK-A6AW-01 5 78359600 78359600 G T DMGDH Missense_Mutation p.P38T 0.46 tolerated_low_confidence(0.21) benign(0.015) TCGA-DK-A6AW-01 5 78379147 78379147 C T BHMT2 Missense_Mutation p.A244V 0.39 tolerated(0.06) benign(0.017) TCGA-DK-A6AW-01 5 78533314 78533314 G A JMY Missense_Mutation p.E281K 0.45 deleterious(0.03) probably_damaging(0.997) TCGA-DK-A6AW-01 5 79024844 79024844 G T CMYA5 Nonsense_Mutation p.E86* 0.43 TCGA-DK-A6AW-01 5 79028135 79028135 G T CMYA5 Nonsense_Mutation p.E1183* 0.30 TCGA-DK-A6AW-01 5 79031290 79031290 T G CMYA5 Silent p.A2234A 0.48 TCGA-DK-A6AW-01 5 79031557 79031557 C T CMYA5 Silent p.I2323I 0.55 TCGA-DK-A6AW-01 5 79031667 79031667 C A CMYA5 Missense_Mutation p.S2360Y 0.52 probably_damaging(0.979) TCGA-DK-A6AW-01 5 79854806 79854806 C A ANKRD34B Missense_Mutation p.D345Y 0.40 deleterious(0.01) possibly_damaging(0.907) TCGA-DK-A6AW-01 5 80628325 80628325 G A ACOT12 Silent p.L454L 0.51 TCGA-DK-A6AW-01 5 81614039 81614039 G T ATP6AP1L Nonsense_Mutation p.E199* 0.43 TCGA-DK-A6AW-01 5 82940187 82940187 A C HAPLN1 Missense_Mutation p.F257C 0.29 deleterious(0) possibly_damaging(0.744) TCGA-DK-A6AW-01 5 878543 878543 C T BRD9 Missense_Mutation p.D400N 0.19 tolerated(1) benign(0.027) TCGA-DK-A6AW-01 5 89931090 89931090 G T GPR98 Missense_Mutation p.D667Y 0.40 probably_damaging(0.953) TCGA-DK-A6AW-01 5 89943439 89943439 G T GPR98 Missense_Mutation p.E1049D 0.35 possibly_damaging(0.874) TCGA-DK-A6AW-01 5 89949143 89949143 G T GPR98 Missense_Mutation p.R1251I 0.34 possibly_damaging(0.766) TCGA-DK-A6AW-01 5 94230397 94230397 G A MCTP1 Missense_Mutation p.S599F 0.57 deleterious(0.04) benign(0.223) TCGA-DK-A6AW-01 5 94830721 94830721 C T TTC37 Missense_Mutation p.G1213R 0.40 deleterious(0.02) probably_damaging(1) TCGA-DK-A6AW-01 5 95116019 95116019 T G RHOBTB3 Missense_Mutation p.F449C 0.57 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 5 96315257 96315257 C A LNPEP Missense_Mutation p.N145K 0.46 deleterious(0.04) benign(0.079) TCGA-DK-A6AW-01 5 98209360 98209360 C A CHD1 Nonsense_Mutation p.E1170* 0.42 TCGA-DK-A6AW-01 5 98209368 98209368 C T CHD1 Missense_Mutation p.R1167Q 0.43 tolerated(0.07) benign(0.372) TCGA-DK-A6AW-01 5 98215333 98215333 G A CHD1 Nonsense_Mutation p.R1054* 0.40 TCGA-DK-A6AW-01 5 98236758 98236758 G T CHD1 Missense_Mutation p.L206I 0.58 tolerated(0.22) benign(0.003) TCGA-DK-A6AW-01 5 99921909 99921909 G T FAM174A 3'UTR 0.39 TCGA-DK-A6AW-01 6 100006310 100006310 C A CCNC Intron 0.48 TCGA-DK-A6AW-01 6 100061775 100061775 C A PRDM13 Missense_Mutation p.Q422K 0.43 tolerated_low_confidence(0.11) benign(0.05) TCGA-DK-A6AW-01 6 100395769 100395769 A C MCHR2 Silent p.P87P 0.48 TCGA-DK-A6AW-01 6 102307194 102307194 C T GRIK2 Silent p.D450D 0.50 TCGA-DK-A6AW-01 6 105239458 105239458 C T HACE1 Missense_Mutation p.R332Q 0.46 deleterious_low_confidence(0.03) benign(0.073) TCGA-DK-A6AW-01 6 105609662 105609662 G T POPDC3 Missense_Mutation p.F41L 0.41 deleterious(0) benign(0.003) TCGA-DK-A6AW-01 6 107100203 107100203 C T QRSL1 Missense_Mutation p.S226L 0.45 deleterious(0.02) benign(0.44) TCGA-DK-A6AW-01 6 107419825 107419825 C T BEND3 Missense_Mutation p.R57Q 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.495) TCGA-DK-A6AW-01 6 108279102 108279102 C T SEC63 Missense_Mutation p.D38N 0.42 tolerated(0.4) possibly_damaging(0.482) TCGA-DK-A6AW-01 6 109294665 109294665 G A ARMC2 Missense_Mutation p.R851Q 0.51 deleterious(0.02) probably_damaging(0.995) TCGA-DK-A6AW-01 6 109308757 109308757 T C SESN1 Missense_Mutation p.Y549C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 6 109814639 109814639 G T AK9 Missense_Mutation p.A1890D 0.39 deleterious(0) probably_damaging(0.94) TCGA-DK-A6AW-01 6 109854609 109854609 G A AK9 Missense_Mutation p.R1139C 0.39 deleterious(0) benign(0.018) TCGA-DK-A6AW-01 6 109978075 109978075 C T AK9 Missense_Mutation p.E215K 0.47 tolerated(0.08) benign(0.443) TCGA-DK-A6AW-01 6 110062695 110062695 G T FIG4 Missense_Mutation p.R275I 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 110726086 110726086 G A DDO Nonsense_Mutation p.R145* 0.49 TCGA-DK-A6AW-01 6 110763562 110763562 C T SLC22A16 Silent p.T356T 0.49 TCGA-DK-A6AW-01 6 111306252 111306252 G T RPF2 Nonsense_Mutation p.E23* 0.47 TCGA-DK-A6AW-01 6 111697441 111697441 G T REV3L Missense_Mutation p.S706Y 0.61 deleterious(0.01) possibly_damaging(0.534) TCGA-DK-A6AW-01 6 11185681 11185681 C T NEDD9 Missense_Mutation p.R740Q 0.41 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 6 11185845 11185845 C T NEDD9 Silent p.S685S 0.47 TCGA-DK-A6AW-01 6 112041037 112041037 G A FYN Missense_Mutation p.T73M 0.49 tolerated(0.11) benign(0.294) TCGA-DK-A6AW-01 6 112041046 112041046 G A FYN Missense_Mutation p.S70L 0.47 tolerated(0.06) benign(0.322) TCGA-DK-A6AW-01 6 112506487 112506487 C T LAMA4 Silent p.E343E 0.41 TCGA-DK-A6AW-01 6 112575157 112575157 C T LAMA4 Splice_Site p.X65_splice 0.33 TCGA-DK-A6AW-01 6 112671146 112671146 G A RFPL4B Missense_Mutation p.R79Q 0.56 tolerated(0.06) benign(0) TCGA-DK-A6AW-01 6 116544254 116544254 C A NT5DC1 Missense_Mutation p.F254L 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 116758434 116758434 C T DSE Missense_Mutation p.L935F 0.55 tolerated_low_confidence(0.47) benign(0.005) TCGA-DK-A6AW-01 6 116953607 116953607 A C RSPH4A 3'UTR 0.56 TCGA-DK-A6AW-01 6 116987982 116987982 T G ZUFSP Missense_Mutation p.E125A 0.46 tolerated(0.47) benign(0.018) TCGA-DK-A6AW-01 6 117013216 117013216 A C KPNA5 Splice_Site p.X47_splice 0.33 TCGA-DK-A6AW-01 6 117150049 117150049 G A GPRC6A Missense_Mutation p.A43V 0.41 deleterious(0.04) benign(0.147) TCGA-DK-A6AW-01 6 117663707 117663707 C T ROS1 Missense_Mutation p.E1509K 0.39 deleterious(0.01) possibly_damaging(0.834) TCGA-DK-A6AW-01 6 117677889 117677889 C A ROS1 Missense_Mutation p.E1348D 0.43 tolerated(0.28) benign(0.002) TCGA-DK-A6AW-01 6 117709020 117709020 T C ROS1 Missense_Mutation p.K646R 0.47 tolerated(0.4) benign(0.001) TCGA-DK-A6AW-01 6 117710712 117710712 C A ROS1 Missense_Mutation p.Q520H 0.53 deleterious(0) possibly_damaging(0.878) TCGA-DK-A6AW-01 6 117718088 117718088 T C ROS1 Missense_Mutation p.T257A 0.52 deleterious(0.02) probably_damaging(0.942) TCGA-DK-A6AW-01 6 119295727 119295727 T G FAM184A Missense_Mutation p.Q927H 0.06 deleterious(0) probably_damaging(0.953) TCGA-DK-A6AW-01 6 12124193 12124193 G A HIVEP1 Missense_Mutation p.D1389N 0.48 deleterious(0.01) probably_damaging(1) TCGA-DK-A6AW-01 6 12125642 12125642 C T HIVEP1 Nonsense_Mutation p.R1872* 0.38 TCGA-DK-A6AW-01 6 121769183 121769183 G A GJA1 3'UTR 0.42 TCGA-DK-A6AW-01 6 122752619 122752619 G A HSF2 Silent p.Q425Q 0.49 TCGA-DK-A6AW-01 6 125231885 125231885 A C RP11-510H23.1 RNA 0.69 TCGA-DK-A6AW-01 6 125232374 125232374 C T RP11-510H23.1 RNA 0.50 TCGA-DK-A6AW-01 6 126249960 126249960 C T NCOA7 3'UTR 0.50 TCGA-DK-A6AW-01 6 127901547 127901547 C T C6orf58 Missense_Mutation p.R176C 0.32 deleterious(0.05) benign(0.043) TCGA-DK-A6AW-01 6 128134112 128134112 C T THEMIS Silent p.P558P 0.39 TCGA-DK-A6AW-01 6 129511377 129511377 C T LAMA2 Missense_Mutation p.R499C 0.49 deleterious(0) possibly_damaging(0.849) TCGA-DK-A6AW-01 6 129637243 129637243 T G LAMA2 Missense_Mutation p.F1329V 0.38 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 129785560 129785560 C T LAMA2 Missense_Mutation p.S2373L 0.41 deleterious(0.03) benign(0.079) TCGA-DK-A6AW-01 6 129813183 129813183 C A LAMA2 Missense_Mutation p.P2679H 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-DK-A6AW-01 6 129899675 129899675 T G ARHGAP18 Missense_Mutation p.K659Q 0.51 deleterious(0) probably_damaging(0.925) TCGA-DK-A6AW-01 6 130152460 130152460 G T TMEM244 3'Flank 0.31 TCGA-DK-A6AW-01 6 130762178 130762178 G T TMEM200A Missense_Mutation p.R204I 0.50 tolerated(0.06) benign(0.022) TCGA-DK-A6AW-01 6 131188666 131188666 T G EPB41L2 Missense_Mutation p.E888A 0.36 deleterious(0.03) probably_damaging(0.987) TCGA-DK-A6AW-01 6 131897859 131897859 G T ARG1 Missense_Mutation p.E38D 0.46 tolerated(0.35) benign(0.001) TCGA-DK-A6AW-01 6 131929092 131929092 G A MED23 Silent p.F399F 0.47 TCGA-DK-A6AW-01 6 131958569 131958569 G A ENPP3 Silent p.K15K 0.39 TCGA-DK-A6AW-01 6 132270539 132270539 G T CTGF Missense_Mutation p.F305L 0.46 deleterious(0.01) possibly_damaging(0.766) TCGA-DK-A6AW-01 6 132643915 132643915 C T MOXD1 Missense_Mutation p.R403Q 0.37 deleterious(0) probably_damaging(0.979) TCGA-DK-A6AW-01 6 13273248 13273248 G A TBC1D7 Intron 0.45 TCGA-DK-A6AW-01 6 132859900 132859900 T C TAAR9 Missense_Mutation p.F158L 0.38 tolerated(0.71) benign(0.006) TCGA-DK-A6AW-01 6 132891500 132891500 T C TAAR6 Missense_Mutation p.C14R 0.36 deleterious(0.01) possibly_damaging(0.5) TCGA-DK-A6AW-01 6 132966550 132966550 G T TAAR1 Missense_Mutation p.S198Y 0.49 deleterious(0.03) possibly_damaging(0.883) TCGA-DK-A6AW-01 6 133050085 133050085 A G VNN3 Intron 0.38 TCGA-DK-A6AW-01 6 133070891 133070891 C T VNN2 Silent p.E438E 0.49 TCGA-DK-A6AW-01 6 134210526 134210526 T C TCF21 5'UTR 0.48 TCGA-DK-A6AW-01 6 135239772 135239772 A G ALDH8A1 Silent p.V415V 0.49 TCGA-DK-A6AW-01 6 135521543 135521543 T G MYB Missense_Mutation p.I647S 0.50 tolerated(0.2) probably_damaging(0.933) TCGA-DK-A6AW-01 6 136472384 136472384 C T PDE7B Nonsense_Mutation p.R157* 0.31 TCGA-DK-A6AW-01 6 136913658 136913658 C T MAP3K5 Silent p.L991L 0.43 TCGA-DK-A6AW-01 6 136944088 136944088 C T MAP3K5 Missense_Mutation p.R683K 0.46 tolerated(0.16) benign(0.051) TCGA-DK-A6AW-01 6 13794167 13794167 C T MCUR1 Missense_Mutation p.E290K 0.39 deleterious(0.01) possibly_damaging(0.467) TCGA-DK-A6AW-01 6 139170484 139170484 C T ECT2L Missense_Mutation p.L328F 0.47 tolerated(0.19) possibly_damaging(0.729) TCGA-DK-A6AW-01 6 139203933 139203933 G A ECT2L Silent p.T651T 0.34 TCGA-DK-A6AW-01 6 139265101 139265101 G A REPS1 Missense_Mutation p.R269C 0.48 deleterious(0.03) benign(0.013) TCGA-DK-A6AW-01 6 139265663 139265663 A G REPS1 Missense_Mutation p.L242P 0.44 deleterious(0.02) probably_damaging(0.956) TCGA-DK-A6AW-01 6 144184235 144184235 C T LTV1 Nonsense_Mutation p.R377* 0.51 TCGA-DK-A6AW-01 6 144262538 144262538 G A PLAGL1 3'UTR 0.55 TCGA-DK-A6AW-01 6 144263139 144263139 C T PLAGL1 Missense_Mutation p.A272T 0.38 tolerated(0.44) benign(0) TCGA-DK-A6AW-01 6 144782332 144782332 G T UTRN Splice_Site p.X903_splice 0.46 TCGA-DK-A6AW-01 6 144832185 144832185 G T UTRN Nonsense_Mutation p.E1624* 0.39 TCGA-DK-A6AW-01 6 144835069 144835069 T G UTRN Missense_Mutation p.F1657V 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 6 146121439 146121439 G A FBXO30 Nonsense_Mutation p.R681* 0.52 TCGA-DK-A6AW-01 6 148865256 148865256 C T SASH1 Nonsense_Mutation p.Q884* 0.48 TCGA-DK-A6AW-01 6 149912053 149912053 G A GINM1 3'UTR 0.60 TCGA-DK-A6AW-01 6 151140852 151140852 G A PLEKHG1 Silent p.T450T 0.44 TCGA-DK-A6AW-01 6 151669965 151669965 G A AKAP12 Missense_Mutation p.E147K 0.39 tolerated(0.13) possibly_damaging(0.472) TCGA-DK-A6AW-01 6 151670865 151670865 T G AKAP12 Missense_Mutation p.L447V 0.43 tolerated(0.62) benign(0.003) TCGA-DK-A6AW-01 6 151672226 151672226 G A AKAP12 Silent p.T900T 0.50 TCGA-DK-A6AW-01 6 151673975 151673975 G A AKAP12 Silent p.S1483S 0.50 TCGA-DK-A6AW-01 6 152476173 152476173 C T SYNE1 Missense_Mutation p.E7995K 0.40 probably_damaging(0.944) TCGA-DK-A6AW-01 6 152542012 152542012 C T SYNE1 Missense_Mutation p.D7276N 0.39 probably_damaging(0.991) TCGA-DK-A6AW-01 6 152647167 152647167 T G SYNE1 Missense_Mutation p.K5122Q 0.56 possibly_damaging(0.489) TCGA-DK-A6AW-01 6 153296353 153296353 G A FBXO5 Silent p.F169F 0.55 TCGA-DK-A6AW-01 6 154732195 154732195 C T CNKSR3 Silent p.P384P 0.43 TCGA-DK-A6AW-01 6 15520469 15520469 C T JARID2 Missense_Mutation p.S1243L 0.45 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6AW-01 6 155574087 155574087 G A TIAM2 Silent p.S1375S 0.61 TCGA-DK-A6AW-01 6 155575144 155575144 G A TIAM2 Silent p.T1421T 0.55 TCGA-DK-A6AW-01 6 155749991 155749991 G A NOX3 Missense_Mutation p.A361V 0.50 deleterious(0.02) benign(0.291) TCGA-DK-A6AW-01 6 157505473 157505473 T G ARID1B Missense_Mutation p.F1152V 0.47 probably_damaging(0.999) TCGA-DK-A6AW-01 6 158094118 158094118 C T ZDHHC14 Silent p.D477D 0.44 TCGA-DK-A6AW-01 6 159104007 159104007 A C SYTL3 Missense_Mutation p.K127T 0.29 deleterious(0) possibly_damaging(0.752) TCGA-DK-A6AW-01 6 159188041 159188041 C T EZR Missense_Mutation p.E556K 0.41 deleterious(0.02) probably_damaging(0.974) TCGA-DK-A6AW-01 6 159262943 159262943 C T OSTCP1 RNA 0.42 TCGA-DK-A6AW-01 6 160198433 160198433 T C ACAT2 Missense_Mutation p.V286A 0.52 tolerated(1) benign(0.008) TCGA-DK-A6AW-01 6 160232768 160232768 C T PNLDC1 Silent p.L286L 0.32 TCGA-DK-A6AW-01 6 160328830 160328830 C T MAS1 Silent p.F281F 0.40 TCGA-DK-A6AW-01 6 160557588 160557588 G A SLC22A1 Missense_Mutation p.E323K 0.45 tolerated(0.17) benign(0.053) TCGA-DK-A6AW-01 6 160663416 160663416 A C SLC22A2 Missense_Mutation p.I433S 0.51 tolerated(0.09) benign(0.142) TCGA-DK-A6AW-01 6 161127486 161127486 C T PLG Silent p.L33L 0.41 TCGA-DK-A6AW-01 6 1624761 1624761 G A GMDS Silent p.G334G 0.56 TCGA-DK-A6AW-01 6 16254924 16254924 C T GMPR Silent p.F141F 0.36 TCGA-DK-A6AW-01 6 166889323 166889323 C T RPS6KA2 Intron 0.44 TCGA-DK-A6AW-01 6 167754003 167754003 G A TTLL2 Silent p.K205K 0.49 TCGA-DK-A6AW-01 6 168226344 168226344 A C MLLT4 5'Flank 0.48 TCGA-DK-A6AW-01 6 168440763 168440763 G A KIF25 Silent p.S171S 0.39 TCGA-DK-A6AW-01 6 168910670 168910670 G A SMOC2 Missense_Mutation p.A54T 0.46 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 6 168949875 168949875 A C SMOC2 Missense_Mutation p.K221T 0.42 tolerated(0.08) benign(0.205) TCGA-DK-A6AW-01 6 17629115 17629115 C A NUP153 Missense_Mutation p.E1105D 0.49 tolerated(0.1) benign(0.071) TCGA-DK-A6AW-01 6 18143853 18143853 C T TPMT Missense_Mutation p.E114K 0.16 tolerated(0.23) benign(0.015) TCGA-DK-A6AW-01 6 20649569 20649570 - A CDKAL1 Frame_Shift_Ins p.N113Kfs*4 0.33 TCGA-DK-A6AW-01 6 21596111 21596111 A G SOX4 Missense_Mutation p.Y449C 0.43 deleterious(0) unknown(0) TCGA-DK-A6AW-01 6 24412525 24412525 T C MRS2 Missense_Mutation p.F164L 0.47 tolerated(0.17) benign(0.043) TCGA-DK-A6AW-01 6 25701492 25701492 G A SCGN Missense_Mutation p.D254N 0.56 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 25819327 25819327 A C SLC17A1 Silent p.S195S 0.61 TCGA-DK-A6AW-01 6 25819932 25819932 C T SLC17A1 Missense_Mutation p.R140Q 0.48 deleterious(0.02) probably_damaging(0.995) TCGA-DK-A6AW-01 6 28121159 28121159 A G ZKSCAN8 Silent p.S367S 0.46 TCGA-DK-A6AW-01 6 28134726 28134726 T C ZNF192P1 RNA 0.47 TCGA-DK-A6AW-01 6 28227707 28227707 G T NKAPL Missense_Mutation p.K186N 0.36 tolerated(0.13) unknown(0) TCGA-DK-A6AW-01 6 28540923 28540923 G T SCAND3 Missense_Mutation p.L915I 0.53 deleterious(0.01) probably_damaging(0.926) TCGA-DK-A6AW-01 6 28543247 28543247 T G SCAND3 Missense_Mutation p.K412T 0.61 deleterious_low_confidence(0.02) benign(0.096) TCGA-DK-A6AW-01 6 28876613 28876613 T G TRIM27 Missense_Mutation p.K297N 0.37 tolerated(0.1) benign(0.015) TCGA-DK-A6AW-01 6 29080099 29080099 C T OR2J3 Silent p.C144C 0.40 TCGA-DK-A6AW-01 6 29141853 29141853 G A OR2J2 Silent p.A147A 0.50 TCGA-DK-A6AW-01 6 29142215 29142215 C A OR2J2 Missense_Mutation p.S268Y 0.46 deleterious(0.01) probably_damaging(0.945) TCGA-DK-A6AW-01 6 29231672 29231672 C A XXbac-BPG308J9.3 RNA 0.39 TCGA-DK-A6AW-01 6 29364549 29364549 C A OR12D2 Missense_Mutation p.L25I 0.42 tolerated(0.06) benign(0.079) TCGA-DK-A6AW-01 6 29523790 29523790 T G UBD Missense_Mutation p.K122T 0.47 deleterious(0) benign(0.438) TCGA-DK-A6AW-01 6 3012793 3012793 C A NQO2 Missense_Mutation p.P63H 0.57 deleterious(0) probably_damaging(0.964) TCGA-DK-A6AW-01 6 30131394 30131394 G A TRIM15 5'UTR 0.40 TCGA-DK-A6AW-01 6 30569277 30569277 C T PPP1R10 3'UTR 0.53 TCGA-DK-A6AW-01 6 30668117 30668117 T G MDC1 3'UTR 0.50 TCGA-DK-A6AW-01 6 31107730 31107730 G T PSORS1C1 3'UTR 0.48 TCGA-DK-A6AW-01 6 31138029 31138029 C T POU5F1 Silent p.K123K 0.49 TCGA-DK-A6AW-01 6 31779382 31779382 G A HSPA1L Missense_Mutation p.S123L 0.43 deleterious_low_confidence(0) benign(0.058) TCGA-DK-A6AW-01 6 31867854 31867854 G A ZBTB12 Missense_Mutation p.S410L 0.45 deleterious(0) benign(0.32) TCGA-DK-A6AW-01 6 31927829 31927829 G A SKIV2L Missense_Mutation p.E57K 0.37 deleterious(0.02) benign(0.235) TCGA-DK-A6AW-01 6 31939292 31939292 A G DXO Missense_Mutation p.L54P 0.49 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 32007544 32007544 C A CYP21A2 Missense_Mutation p.L224I 0.42 tolerated(0.09) benign(0.119) TCGA-DK-A6AW-01 6 32017133 32017133 A G TNXB 5'Flank 0.50 TCGA-DK-A6AW-01 6 3226446 3226446 G A TUBB2B Missense_Mutation p.S75L 0.43 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-DK-A6AW-01 6 32339564 32339564 A G C6orf10 5'UTR 0.54 TCGA-DK-A6AW-01 6 32847121 32847121 C A PPP1R2P1 RNA 0.43 TCGA-DK-A6AW-01 6 32945977 32945977 A C BRD2 Missense_Mutation p.K551N 0.49 deleterious(0.04) benign(0.097) TCGA-DK-A6AW-01 6 32974508 32974508 T C HLA-DOA 3'UTR 0.41 TCGA-DK-A6AW-01 6 32974600 32974600 C A HLA-DOA 3'UTR 0.49 TCGA-DK-A6AW-01 6 33041301 33041301 C A HLA-DPA1 Missense_Mutation p.R16I 0.44 deleterious(0.03) benign(0.11) TCGA-DK-A6AW-01 6 33156881 33156881 G A COL11A2 Missense_Mutation p.A106V 0.42 possibly_damaging(0.465) TCGA-DK-A6AW-01 6 33171492 33171492 G A SLC39A7 Missense_Mutation p.E438K 0.41 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 6 33236353 33236353 C T VPS52 Missense_Mutation p.A208T 0.49 deleterious(0) benign(0.441) TCGA-DK-A6AW-01 6 33384906 33384906 C T CUTA Missense_Mutation p.G130R 0.46 deleterious(0) probably_damaging(0.988) TCGA-DK-A6AW-01 6 33424332 33424332 G A ZBTB9 3'UTR 0.46 TCGA-DK-A6AW-01 6 33752202 33752202 G A LEMD2 Silent p.F260F 0.38 TCGA-DK-A6AW-01 6 35260389 35260389 G A ZNF76 Silent p.S330S 0.42 TCGA-DK-A6AW-01 6 35554774 35554774 C A FKBP5 Intron 0.37 TCGA-DK-A6AW-01 6 35558968 35558968 T G FKBP5 Missense_Mutation p.K232T 0.51 deleterious(0.04) benign(0.161) TCGA-DK-A6AW-01 6 36291965 36291965 C A C6orf222 Nonsense_Mutation p.E391* 0.41 TCGA-DK-A6AW-01 6 36981500 36981500 G A FGD2 Missense_Mutation p.D215N 0.51 deleterious(0) possibly_damaging(0.653) TCGA-DK-A6AW-01 6 37451032 37451032 C A CCDC167 Missense_Mutation p.R75L 0.34 deleterious(0.01) benign(0.432) TCGA-DK-A6AW-01 6 37605033 37605033 C T MDGA1 3'UTR 0.36 TCGA-DK-A6AW-01 6 38084505 38084505 G A ZFAND3 Silent p.S173S 0.44 TCGA-DK-A6AW-01 6 38743529 38743529 G A DNAH8 Splice_Site p.X372_splice 0.47 TCGA-DK-A6AW-01 6 38791338 38791338 G A DNAH8 Missense_Mutation p.E1024K 0.39 benign(0.021) TCGA-DK-A6AW-01 6 38835884 38835884 C A DNAH8 Missense_Mutation p.T2030N 0.45 probably_damaging(0.997) TCGA-DK-A6AW-01 6 38840389 38840389 G A DNAH8 Silent p.T2139T 0.48 TCGA-DK-A6AW-01 6 38919111 38919111 G A DNAH8 Missense_Mutation p.R3872H 0.39 possibly_damaging(0.67) TCGA-DK-A6AW-01 6 38942154 38942154 C A DNAH8 Missense_Mutation p.S4011Y 0.13 probably_damaging(0.987) TCGA-DK-A6AW-01 6 38952003 38952003 C T DNAH8 Missense_Mutation p.R4108W 0.46 probably_damaging(0.982) TCGA-DK-A6AW-01 6 39046788 39046788 C A GLP1R Missense_Mutation p.L314I 0.46 deleterious(0.04) probably_damaging(0.92) TCGA-DK-A6AW-01 6 39073395 39073395 C T SAYSD1 Missense_Mutation p.G122D 0.37 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 39512337 39512337 C T KIF6 Missense_Mutation p.E474K 0.32 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 6 39512364 39512364 G A KIF6 Nonsense_Mutation p.R465* 0.36 TCGA-DK-A6AW-01 6 41767615 41767615 C A USP49 Missense_Mutation p.M541I 0.63 deleterious(0.02) benign(0.193) TCGA-DK-A6AW-01 6 42235918 42235918 G A TRERF1 Silent p.L471L 0.45 TCGA-DK-A6AW-01 6 43006171 43006171 G A CUL7 Missense_Mutation p.S1620L 0.52 tolerated(0.06) benign(0.09) TCGA-DK-A6AW-01 6 43323774 43323774 T C ZNF318 Missense_Mutation p.E433G 0.41 probably_damaging(0.925) TCGA-DK-A6AW-01 6 43487902 43487902 G A POLR1C Missense_Mutation p.E161K 0.41 tolerated(0.46) benign(0.02) TCGA-DK-A6AW-01 6 43565467 43565467 C T POLH Silent p.L175L 0.43 TCGA-DK-A6AW-01 6 43748499 43748499 A C VEGFA Missense_Mutation p.Q331H 0.35 tolerated_low_confidence(0.09) probably_damaging(0.963) TCGA-DK-A6AW-01 6 44199825 44199825 G A SLC29A1 Missense_Mutation p.A319T 0.40 tolerated(0.4) benign(0.426) TCGA-DK-A6AW-01 6 44219208 44219208 G T HSP90AB1 Nonsense_Mutation p.E393* 0.58 TCGA-DK-A6AW-01 6 44224226 44224226 G A SLC35B2 Silent p.G71G 0.42 TCGA-DK-A6AW-01 6 44229372 44229372 T G NFKBIE Missense_Mutation p.N367H 0.44 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 6 45405785 45405785 A C RUNX2 Silent p.R228R 0.50 TCGA-DK-A6AW-01 6 46107841 46107841 C T ENPP4 Missense_Mutation p.S174L 0.45 deleterious(0.02) benign(0.157) TCGA-DK-A6AW-01 6 46690525 46690525 G A PLA2G7 Missense_Mutation p.S35L 0.47 tolerated(1) benign(0.014) TCGA-DK-A6AW-01 6 46823737 46823737 C A GPR116 Missense_Mutation p.R1312I 0.39 deleterious(0.03) probably_damaging(0.954) TCGA-DK-A6AW-01 6 47501381 47501381 T C CD2AP Missense_Mutation p.I70T 0.44 tolerated(0.36) benign(0.09) TCGA-DK-A6AW-01 6 47544323 47544323 G A CD2AP Missense_Mutation p.E265K 0.38 deleterious(0.03) benign(0.003) TCGA-DK-A6AW-01 6 47573948 47573948 C T CD2AP Missense_Mutation p.L489F 0.48 tolerated(0.17) probably_damaging(0.934) TCGA-DK-A6AW-01 6 47675062 47675062 G T GPR115 Missense_Mutation p.K27N 0.43 deleterious(0.02) benign(0.202) TCGA-DK-A6AW-01 6 47976584 47976584 G A PTCHD4 Silent p.I231I 0.42 TCGA-DK-A6AW-01 6 49423908 49423908 T C MUT Missense_Mutation p.M266V 0.45 deleterious_low_confidence(0) benign(0.303) TCGA-DK-A6AW-01 6 50791223 50791223 C T TFAP2B Missense_Mutation p.S62L 0.48 tolerated(0.06) benign(0.127) TCGA-DK-A6AW-01 6 52143610 52143610 T G MCM3 Missense_Mutation p.K315T 0.07 tolerated(0.11) possibly_damaging(0.54) TCGA-DK-A6AW-01 6 52960341 52960341 C T FBXO9 Missense_Mutation p.R372C 0.44 tolerated(0.09) benign(0.033) TCGA-DK-A6AW-01 6 52992948 52992948 C A GCM1 3'UTR 0.53 TCGA-DK-A6AW-01 6 53883756 53883756 G A MLIP 5'UTR 0.58 TCGA-DK-A6AW-01 6 54792313 54792313 G A FAM83B Missense_Mutation p.R206Q 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 6 54804695 54804695 C T FAM83B Missense_Mutation p.S309L 0.46 tolerated(0.07) possibly_damaging(0.559) TCGA-DK-A6AW-01 6 55925754 55925754 C T COL21A1 Missense_Mutation p.A763T 0.50 tolerated(0.49) benign(0.012) TCGA-DK-A6AW-01 6 56417396 56417396 G A DST Silent p.F2775F 0.38 TCGA-DK-A6AW-01 6 56422132 56422132 T G DST Missense_Mutation p.Q2252H 0.50 probably_damaging(0.967) TCGA-DK-A6AW-01 6 56483568 56483568 C T DST Intron 0.44 TCGA-DK-A6AW-01 6 56485116 56485116 C T DST Intron 0.32 TCGA-DK-A6AW-01 6 599131 599131 T C EXOC2 Silent p.R279R 0.45 TCGA-DK-A6AW-01 6 64356554 64356554 A C PHF3 Missense_Mutation p.D33A 0.41 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 6 66205032 66205032 G T EYS Missense_Mutation p.S91Y 0.49 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DK-A6AW-01 6 66205109 66205109 T G EYS Missense_Mutation p.K65N 0.45 tolerated_low_confidence(0.07) probably_damaging(0.978) TCGA-DK-A6AW-01 6 70642726 70642726 G A COL19A1 Missense_Mutation p.E240K 0.63 deleterious(0.01) unknown(0) TCGA-DK-A6AW-01 6 71298489 71298489 C A C6orf57 3'UTR 0.67 TCGA-DK-A6AW-01 6 71603909 71603909 G A B3GAT2 Missense_Mutation p.P220S 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 6 72945355 72945355 A G RIMS1 Missense_Mutation p.D594G 0.31 deleterious(0) possibly_damaging(0.758) TCGA-DK-A6AW-01 6 7298166 7298166 T G SSR1 Missense_Mutation p.E230A 0.32 tolerated(0.47) benign(0.055) TCGA-DK-A6AW-01 6 73110296 73110296 C T RIMS1 Silent p.I1653I 0.50 TCGA-DK-A6AW-01 6 7327107 7327107 C A CAGE1 Missense_Mutation p.R835I 0.35 tolerated_low_confidence(0.06) possibly_damaging(0.883) TCGA-DK-A6AW-01 6 7373437 7373437 C T CAGE1 Missense_Mutation p.E539K 0.43 tolerated(0.38) probably_damaging(0.956) TCGA-DK-A6AW-01 6 7401214 7401214 G T RIOK1 Missense_Mutation p.M168I 0.29 tolerated(0.09) benign(0.109) TCGA-DK-A6AW-01 6 74117797 74117797 C T DDX43 Silent p.F384F 0.47 TCGA-DK-A6AW-01 6 75853049 75853049 C A COL12A1 Missense_Mutation p.M1582I 0.43 benign(0.007) TCGA-DK-A6AW-01 6 75950914 75950914 G A COX7A2 Missense_Mutation p.P61L 0.47 deleterious(0.02) possibly_damaging(0.516) TCGA-DK-A6AW-01 6 76023752 76023752 C T FILIP1 Missense_Mutation p.R599K 0.44 tolerated(0.24) benign(0.005) TCGA-DK-A6AW-01 6 7880445 7880445 G A BMP6 Missense_Mutation p.E471K 0.39 deleterious(0.01) benign(0.42) TCGA-DK-A6AW-01 6 7886244 7886244 G A TXNDC5 Silent p.F332F 0.31 TCGA-DK-A6AW-01 6 80223161 80223161 C T LCA5 Missense_Mutation p.R163H 0.54 deleterious(0.01) benign(0.277) TCGA-DK-A6AW-01 6 8080237 8080237 C A EEF1E1 Missense_Mutation p.E137D 0.43 deleterious(0.02) possibly_damaging(0.57) TCGA-DK-A6AW-01 6 80838935 80838935 G A BCKDHB Missense_Mutation p.R111Q 0.49 tolerated(0.75) benign(0.02) TCGA-DK-A6AW-01 6 82891690 82891690 C A IBTK Nonsense_Mutation p.E1211* 0.50 TCGA-DK-A6AW-01 6 83880275 83880275 G A PGM3 Intron 0.39 TCGA-DK-A6AW-01 6 84234239 84234239 A C PRSS35 Missense_Mutation p.K360T 0.40 deleterious(0.02) possibly_damaging(0.662) TCGA-DK-A6AW-01 6 84375280 84375280 C T SNAP91 Missense_Mutation p.E51K 0.47 deleterious(0) unknown(0) TCGA-DK-A6AW-01 6 84910566 84910566 T C KIAA1009 Missense_Mutation p.K259R 0.49 tolerated(0.44) benign(0.014) TCGA-DK-A6AW-01 6 87725856 87725856 C T HTR1E Silent p.F268F 0.46 TCGA-DK-A6AW-01 6 87796144 87796144 C A CGA Nonsense_Mutation p.E33* 0.38 TCGA-DK-A6AW-01 6 87966210 87966210 G T ZNF292 Nonsense_Mutation p.E955* 0.48 TCGA-DK-A6AW-01 6 87967578 87967578 G T ZNF292 Nonsense_Mutation p.E1411* 0.43 TCGA-DK-A6AW-01 6 87971341 87971341 A C ZNF292 Missense_Mutation p.N2665T 0.58 tolerated(0.07) benign(0.052) TCGA-DK-A6AW-01 6 88372791 88372791 C T ORC3 Missense_Mutation p.R589C 0.45 deleterious(0.01) probably_damaging(0.927) TCGA-DK-A6AW-01 6 88387650 88387650 C A AKIRIN2 Nonsense_Mutation p.E139* 0.51 TCGA-DK-A6AW-01 6 89891741 89891741 G A GABRR1 Missense_Mutation p.R278C 0.43 deleterious(0) benign(0.178) TCGA-DK-A6AW-01 6 90438796 90438796 T G MDN1 Missense_Mutation p.N1735H 0.51 probably_damaging(1) TCGA-DK-A6AW-01 6 91226185 91226185 C A MAP3K7 3'UTR 0.53 TCGA-DK-A6AW-01 6 91228169 91228169 C A MAP3K7 Missense_Mutation p.R546I 0.39 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 6 96651988 96651988 G A FUT9 Silent p.R319R 0.46 TCGA-DK-A6AW-01 6 97594718 97594718 T G MMS22L Missense_Mutation p.Q1232H 0.50 deleterious(0.02) benign(0.002) TCGA-DK-A6AW-01 6 97677245 97677245 C A MMS22L Nonsense_Mutation p.E522* 0.42 TCGA-DK-A6AW-01 6 97679429 97679429 C T MMS22L Missense_Mutation p.D468N 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-DK-A6AW-01 6 97730367 97730367 T G MMS22L 5'UTR 0.43 TCGA-DK-A6AW-01 7 100366269 100366269 G A ZAN Missense_Mutation p.R1693H 0.48 unknown(0) TCGA-DK-A6AW-01 7 100481757 100481757 A C SRRT Missense_Mutation p.Q218H 0.45 tolerated(0.06) benign(0.011) TCGA-DK-A6AW-01 7 100551363 100551363 G A MUC3A Silent p.P38P 0.44 TCGA-DK-A6AW-01 7 100663439 100663439 C T MUC17 Missense_Mutation p.A8V 0.40 benign(0.007) TCGA-DK-A6AW-01 7 100679290 100679290 C A MUC17 Silent p.I1531I 0.43 TCGA-DK-A6AW-01 7 100817924 100817924 G A NAT16 Silent p.F55F 0.45 TCGA-DK-A6AW-01 7 100866768 100866768 G T ZNHIT1 Missense_Mutation p.K68N 0.50 deleterious(0.03) benign(0.441) TCGA-DK-A6AW-01 7 101839971 101839971 C T CUX1 Missense_Mutation p.P438L 0.50 tolerated(0.07) unknown(0) TCGA-DK-A6AW-01 7 102574931 102574931 A G LRRC17 Missense_Mutation p.K191E 0.43 tolerated(0.06) benign(0.309) TCGA-DK-A6AW-01 7 102952678 102952678 T C PMPCB Missense_Mutation p.F477S 0.39 deleterious(0.02) benign(0.011) TCGA-DK-A6AW-01 7 103048327 103048327 G A SLC26A5 Missense_Mutation p.P287S 0.42 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 7 103061834 103061834 G A SLC26A5 Missense_Mutation p.A43V 0.30 tolerated(0.54) benign(0.121) TCGA-DK-A6AW-01 7 103123353 103123353 T G RELN Missense_Mutation p.D3416A 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 7 103201986 103201986 A C RELN Missense_Mutation p.F1841C 0.33 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 7 103841261 103841261 C T ORC5 Missense_Mutation p.R104H 0.36 deleterious(0.01) probably_damaging(0.921) TCGA-DK-A6AW-01 7 104715210 104715210 A C KMT2E Missense_Mutation p.K226T 0.61 deleterious(0) benign(0.403) TCGA-DK-A6AW-01 7 105206080 105206080 A C RINT1 Missense_Mutation p.E724A 0.41 deleterious(0.03) probably_damaging(0.973) TCGA-DK-A6AW-01 7 105739664 105739664 T A SYPL1 Missense_Mutation p.N63I 0.28 deleterious(0.02) benign(0.029) TCGA-DK-A6AW-01 7 106710731 106710731 G A PRKAR2B Missense_Mutation p.V105I 0.40 tolerated(0.41) benign(0.022) TCGA-DK-A6AW-01 7 107323724 107323724 C T SLC26A4 Silent p.V281V 0.48 TCGA-DK-A6AW-01 7 107398814 107398814 C T CBLL1 Missense_Mutation p.P223S 0.43 tolerated(0.09) benign(0.421) TCGA-DK-A6AW-01 7 107431574 107431574 C T SLC26A3 Silent p.S163S 0.46 TCGA-DK-A6AW-01 7 107834808 107834808 A C NRCAM Missense_Mutation p.L510V 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6AW-01 7 108112768 108112768 G A PNPLA8 3'UTR 0.50 TCGA-DK-A6AW-01 7 111541855 111541855 C A DOCK4 Nonsense_Mutation p.E399* 0.50 TCGA-DK-A6AW-01 7 111980968 111980968 C T ZNF277 Missense_Mutation p.R351W 0.47 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 7 112112292 112112292 G T IFRD1 Nonsense_Mutation p.E354* 0.38 TCGA-DK-A6AW-01 7 112423944 112423944 G T TMEM168 Missense_Mutation p.L313I 0.49 tolerated(0.5) benign(0.001) TCGA-DK-A6AW-01 7 112461835 112461835 G T C7orf60 Missense_Mutation p.F394L 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.899) TCGA-DK-A6AW-01 7 112461939 112461939 G A C7orf60 Nonsense_Mutation p.R360* 0.50 TCGA-DK-A6AW-01 7 112462303 112462303 G A C7orf60 Silent p.F238F 0.44 TCGA-DK-A6AW-01 7 116544284 116544284 G T CAPZA2 Missense_Mutation p.K91N 0.29 deleterious(0.01) possibly_damaging(0.58) TCGA-DK-A6AW-01 7 116739821 116739821 A C ST7 Missense_Mutation p.M53L 0.50 tolerated(0.36) benign(0.173) TCGA-DK-A6AW-01 7 117182092 117182092 A G CFTR Missense_Mutation p.Y380C 0.54 deleterious(0) benign(0.013) TCGA-DK-A6AW-01 7 117876899 117876899 C A ANKRD7 Missense_Mutation p.L211I 0.16 deleterious(0.03) possibly_damaging(0.77) TCGA-DK-A6AW-01 7 119914985 119914985 G A KCND2 Missense_Mutation p.R100H 0.45 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 7 120610833 120610833 G T ING3 Nonsense_Mutation p.E334* 0.51 TCGA-DK-A6AW-01 7 120614878 120614878 A C ING3 Silent p.R413R 0.37 TCGA-DK-A6AW-01 7 120770290 120770290 A C CPED1 Missense_Mutation p.N507H 0.46 deleterious(0.03) benign(0.007) TCGA-DK-A6AW-01 7 121671535 121671535 C T PTPRZ1 Silent p.V1696V 0.50 TCGA-DK-A6AW-01 7 123097544 123097544 T G IQUB Missense_Mutation p.D695A 0.49 deleterious(0.03) possibly_damaging(0.521) TCGA-DK-A6AW-01 7 123136919 123136919 T G IQUB Missense_Mutation p.K355N 0.37 tolerated(0.06) benign(0.133) TCGA-DK-A6AW-01 7 123143413 123143413 T G IQUB Missense_Mutation p.K179N 0.57 tolerated(0.33) benign(0.114) TCGA-DK-A6AW-01 7 123594195 123594195 G T SPAM1 Nonsense_Mutation p.E191* 0.44 TCGA-DK-A6AW-01 7 124404413 124404413 C T GPR37 Silent p.G206G 0.38 TCGA-DK-A6AW-01 7 126173578 126173578 C T GRM8 Missense_Mutation p.E620K 0.46 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 7 126542691 126542691 C T GRM8 Missense_Mutation p.R354Q 0.58 tolerated(0.17) possibly_damaging(0.794) TCGA-DK-A6AW-01 7 1275509 1275509 G T UNCX Missense_Mutation p.E164D 0.29 deleterious(0) possibly_damaging(0.799) TCGA-DK-A6AW-01 7 127721415 127721415 T C SND1 Missense_Mutation p.W658R 0.41 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 7 128355598 128355598 G T FAM71F1 Nonsense_Mutation p.E35* 0.43 TCGA-DK-A6AW-01 7 128441252 128441252 C A CCDC136 Missense_Mutation p.S120Y 0.42 deleterious(0.01) possibly_damaging(0.676) TCGA-DK-A6AW-01 7 128486893 128486893 G A FLNC Missense_Mutation p.E1408K 0.41 deleterious(0) possibly_damaging(0.796) TCGA-DK-A6AW-01 7 128494915 128494915 G T FLNC Nonsense_Mutation p.E2362* 0.39 TCGA-DK-A6AW-01 7 128852058 128852058 G T SMO Missense_Mutation p.Q710H 0.33 tolerated_low_confidence(0.27) benign(0.001) TCGA-DK-A6AW-01 7 129474841 129474841 T C UBE2H Missense_Mutation p.D163G 0.37 deleterious(0.02) benign(0.25) TCGA-DK-A6AW-01 7 129821492 129821492 C T TMEM209 Missense_Mutation p.R364Q 0.36 tolerated(0.06) possibly_damaging(0.526) TCGA-DK-A6AW-01 7 130357609 130357609 C T TSGA13 Silent p.S165S 0.50 TCGA-DK-A6AW-01 7 131073667 131073667 A T MKLN1 Missense_Mutation p.K112N 0.31 tolerated(0.09) benign(0.039) TCGA-DK-A6AW-01 7 133861780 133861780 G T LRGUK Nonsense_Mutation p.E358* 0.43 TCGA-DK-A6AW-01 7 134254187 134254187 G T AKR1B15 Missense_Mutation p.R114I 0.41 deleterious(0.01) possibly_damaging(0.58) TCGA-DK-A6AW-01 7 134625945 134625945 G A CALD1 Missense_Mutation p.E497K 0.54 deleterious(0.01) unknown(0) TCGA-DK-A6AW-01 7 134943239 134943239 T G STRA8 Missense_Mutation p.L330V 0.58 deleterious(0.03) possibly_damaging(0.904) TCGA-DK-A6AW-01 7 135047517 135047517 T G CNOT4 3'UTR 0.38 TCGA-DK-A6AW-01 7 135269589 135269589 A C NUP205 Missense_Mutation p.E351A 0.54 deleterious(0.03) possibly_damaging(0.475) TCGA-DK-A6AW-01 7 135272359 135272359 C T NUP205 Nonsense_Mutation p.R419* 0.45 TCGA-DK-A6AW-01 7 135376055 135376055 G T SLC13A4 Nonsense_Mutation p.S446* 0.37 TCGA-DK-A6AW-01 7 136700155 136700155 T A CHRM2 Missense_Mutation p.F181L 0.47 tolerated(1) benign(0.019) TCGA-DK-A6AW-01 7 137263058 137263058 C A DGKI Missense_Mutation p.E552D 0.47 deleterious(0.02) probably_damaging(0.978) TCGA-DK-A6AW-01 7 138732444 138732444 C T ZC3HAV1 Missense_Mutation p.D869N 0.47 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AW-01 7 13949261 13949261 G A ETV1 Silent p.F312F 0.53 TCGA-DK-A6AW-01 7 139801902 139801902 C T KDM7A Missense_Mutation p.R496Q 0.39 tolerated(0.05) probably_damaging(0.984) TCGA-DK-A6AW-01 7 140267045 140267045 C A DENND2A Missense_Mutation p.K540N 0.53 deleterious(0.03) possibly_damaging(0.77) TCGA-DK-A6AW-01 7 141408808 141408808 C T WEE2 Missense_Mutation p.P84S 0.45 tolerated(0.18) benign(0.007) TCGA-DK-A6AW-01 7 141619053 141619053 C A OR9A4 Silent p.V126V 0.43 TCGA-DK-A6AW-01 7 142099709 142099709 G A TRBV7-8 Silent p.V31V 0.42 TCGA-DK-A6AW-01 7 142139460 142139460 T C TRBV7-6 Silent p.R55R 0.41 TCGA-DK-A6AW-01 7 142144050 142144050 G T TRBV6-7 Missense_Mutation p.S12Y 0.25 tolerated(0.13) benign(0.284) TCGA-DK-A6AW-01 7 14216513 14216513 G T DGKB Missense_Mutation p.S753Y 0.43 tolerated(0.22) possibly_damaging(0.489) TCGA-DK-A6AW-01 7 142640660 142640660 A G KEL Missense_Mutation p.V539A 0.53 deleterious(0.03) benign(0.172) TCGA-DK-A6AW-01 7 142651351 142651351 G A KEL Silent p.L282L 0.39 TCGA-DK-A6AW-01 7 142919945 142919945 C A TAS2R40 Missense_Mutation p.F258L 0.45 tolerated(0.36) benign(0.029) TCGA-DK-A6AW-01 7 143036686 143036686 G T CLCN1 Missense_Mutation p.K518N 0.54 tolerated(0.1) possibly_damaging(0.881) TCGA-DK-A6AW-01 7 143085633 143085633 G A ZYX Missense_Mutation p.R399H 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A6AW-01 7 143141092 143141092 G A TAS2R60 Missense_Mutation p.D183N 0.47 tolerated(1) benign(0) TCGA-DK-A6AW-01 7 143453986 143453986 C A CTAGE6 Nonsense_Mutation p.E256* 0.13 TCGA-DK-A6AW-01 7 144096925 144096925 C T NOBOX Missense_Mutation p.R360Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 7 146829494 146829494 A G CNTNAP2 Missense_Mutation p.H414R 0.39 tolerated(0.15) benign(0.001) TCGA-DK-A6AW-01 7 147092728 147092728 G T CNTNAP2 Missense_Mutation p.S509I 0.40 tolerated(0.17) benign(0.004) TCGA-DK-A6AW-01 7 147869488 147869488 T C CNTNAP2 Silent p.N976N 0.05 TCGA-DK-A6AW-01 7 149479318 149479318 G A SSPO RNA 0.61 TCGA-DK-A6AW-01 7 149529936 149529936 G A SSPO RNA 0.41 TCGA-DK-A6AW-01 7 149544830 149544830 A C ZNF862 Missense_Mutation p.K83T 0.50 tolerated_low_confidence(0.7) benign(0.001) TCGA-DK-A6AW-01 7 150417149 150417149 C T GIMAP1 Silent p.N19N 0.44 TCGA-DK-A6AW-01 7 150647290 150647290 C A KCNH2 Missense_Mutation p.E788D 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 7 150725686 150725686 C A ABCB8 Missense_Mutation p.F28L 0.56 tolerated_low_confidence(0.15) benign(0.313) TCGA-DK-A6AW-01 7 151704947 151704947 G A GALNTL5 Missense_Mutation p.R315H 0.43 tolerated(0.26) benign(0.003) TCGA-DK-A6AW-01 7 151845580 151845580 G A KMT2C Nonsense_Mutation p.R4478* 0.41 TCGA-DK-A6AW-01 7 151877154 151877154 G A KMT2C Nonsense_Mutation p.R2403* 0.35 TCGA-DK-A6AW-01 7 151884345 151884345 A G KMT2C Splice_Site p.X1670_splice 0.45 TCGA-DK-A6AW-01 7 151962236 151962236 G T KMT2C Missense_Mutation p.F357L 0.06 benign(0.02) TCGA-DK-A6AW-01 7 151970902 151970902 C A KMT2C Missense_Mutation p.E300D 0.04 benign(0.047) TCGA-DK-A6AW-01 7 154681001 154681001 G A DPP6 Missense_Mutation p.R775Q 0.34 deleterious(0.04) probably_damaging(1) TCGA-DK-A6AW-01 7 156961752 156961752 G A UBE3C Missense_Mutation p.R44Q 0.47 tolerated(0.12) benign(0.063) TCGA-DK-A6AW-01 7 157155916 157155916 G A DNAJB6 Missense_Mutation p.E43K 0.55 deleterious(0) probably_damaging(0.963) TCGA-DK-A6AW-01 7 157177652 157177652 G T DNAJB6 Silent p.S190S 0.45 TCGA-DK-A6AW-01 7 157475568 157475568 G A PTPRN2 Missense_Mutation p.A617V 0.46 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 7 16685266 16685266 T C ANKMY2 5'UTR 0.65 TCGA-DK-A6AW-01 7 16817466 16817466 G A TSPAN13 Missense_Mutation p.R119Q 0.46 tolerated(0.24) benign(0.003) TCGA-DK-A6AW-01 7 16839412 16839412 C A AGR2 Nonsense_Mutation p.E96* 0.33 TCGA-DK-A6AW-01 7 16901054 16901054 C A AGR3 Missense_Mutation p.K107N 0.51 deleterious(0.02) probably_damaging(0.995) TCGA-DK-A6AW-01 7 18625026 18625026 G T HDAC9 Nonsense_Mutation p.E49* 0.43 TCGA-DK-A6AW-01 7 19184565 19184565 C T FERD3L Missense_Mutation p.E141K 0.50 deleterious(0) probably_damaging(0.99) TCGA-DK-A6AW-01 7 19761630 19761630 T G TMEM196 3'UTR 0.53 TCGA-DK-A6AW-01 7 20198108 20198108 A G MACC1 Missense_Mutation p.S626P 0.50 tolerated(0.1) benign(0.025) TCGA-DK-A6AW-01 7 20199616 20199616 T C MACC1 Missense_Mutation p.H123R 0.35 tolerated(0.41) benign(0.005) TCGA-DK-A6AW-01 7 20685493 20685493 G T ABCB5 Nonsense_Mutation p.E265* 0.44 TCGA-DK-A6AW-01 7 20685674 20685674 G T ABCB5 Missense_Mutation p.M298I 0.52 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 7 20698296 20698296 G T ABCB5 Missense_Mutation p.E568D 0.37 tolerated(1) benign(0.007) TCGA-DK-A6AW-01 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.46 tolerated(0.11) benign(0.16) TCGA-DK-A6AW-01 7 20766693 20766693 A G ABCB5 Missense_Mutation p.T886A 0.54 deleterious(0) probably_damaging(0.991) TCGA-DK-A6AW-01 7 21516880 21516880 G A SP4 Missense_Mutation p.R621Q 0.48 tolerated(0.07) benign(0.165) TCGA-DK-A6AW-01 7 21628898 21628898 T C DNAH11 Silent p.F682F 0.47 TCGA-DK-A6AW-01 7 21639519 21639519 G T DNAH11 Missense_Mutation p.D928Y 0.48 possibly_damaging(0.745) TCGA-DK-A6AW-01 7 21678629 21678629 C T DNAH11 Silent p.F1635F 0.44 TCGA-DK-A6AW-01 7 21747336 21747336 G A DNAH11 Missense_Mutation p.R2196Q 0.55 benign(0.013) TCGA-DK-A6AW-01 7 21945183 21945183 C T CDCA7L Missense_Mutation p.E330K 0.42 deleterious(0.02) benign(0.206) TCGA-DK-A6AW-01 7 21951326 21951326 C A CDCA7L Missense_Mutation p.R71I 0.39 deleterious(0) possibly_damaging(0.526) TCGA-DK-A6AW-01 7 22259538 22259538 C A RAPGEF5 Nonsense_Mutation p.E162* 0.38 TCGA-DK-A6AW-01 7 2284264 2284264 C T NUDT1 Missense_Mutation p.L42F 0.36 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 7 23004147 23004147 G A FAM126A Silent p.I210I 0.34 TCGA-DK-A6AW-01 7 23300226 23300226 C T GPNMB Silent p.S284S 0.54 TCGA-DK-A6AW-01 7 23353258 23353258 A C IGF2BP3 Missense_Mutation p.I470M 0.28 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 7 23353272 23353272 C T IGF2BP3 Missense_Mutation p.A466T 0.27 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 7 23827687 23827687 A C STK31 Missense_Mutation p.N859T 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 7 23830450 23830450 G A STK31 Missense_Mutation p.R882Q 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 7 2411474 2411474 C T EIF3B Silent p.V559V 0.37 TCGA-DK-A6AW-01 7 24843975 24843975 G A OSBPL3 Silent p.V842V 0.43 TCGA-DK-A6AW-01 7 24856293 24856293 T G OSBPL3 Missense_Mutation p.N655H 0.46 deleterious(0.01) probably_damaging(0.99) TCGA-DK-A6AW-01 7 27187306 27187306 G T HOXA6 Missense_Mutation p.F21L 0.45 tolerated(0.13) possibly_damaging(0.827) TCGA-DK-A6AW-01 7 2979560 2979560 G A CARD11 Silent p.I229I 0.43 TCGA-DK-A6AW-01 7 30197265 30197265 G A MTURN 3'UTR 0.50 TCGA-DK-A6AW-01 7 30793458 30793458 G A INMT Missense_Mutation p.R89H 0.04 deleterious(0.01) benign(0.007) TCGA-DK-A6AW-01 7 30893065 30893065 G A FAM188B Missense_Mutation p.S556N 0.46 tolerated(1) benign(0.004) TCGA-DK-A6AW-01 7 30951892 30951892 C T AQP1 Missense_Mutation p.S123L 0.40 tolerated(0.05) benign(0.002) TCGA-DK-A6AW-01 7 31126558 31126558 G A ADCYAP1R1 Silent p.G275G 0.38 TCGA-DK-A6AW-01 7 31682707 31682707 G T CCDC129 Nonsense_Mutation p.E601* 0.38 TCGA-DK-A6AW-01 7 31793005 31793005 C A PDE1C Missense_Mutation p.R768I 0.39 deleterious_low_confidence(0) benign(0.132) TCGA-DK-A6AW-01 7 31887643 31887643 G A PDE1C Missense_Mutation p.R367C 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 7 31904657 31904657 C A PDE1C Nonsense_Mutation p.E277* 0.33 TCGA-DK-A6AW-01 7 34014374 34014374 A C BMPER Missense_Mutation p.K185T 0.41 tolerated(0.12) benign(0.077) TCGA-DK-A6AW-01 7 34874018 34874018 C T NPSR1 Nonsense_Mutation p.R235* 0.48 TCGA-DK-A6AW-01 7 34989478 34989478 G T DPY19L1 Missense_Mutation p.F378L 0.33 tolerated(0.09) benign(0.162) TCGA-DK-A6AW-01 7 37955777 37955777 T G SFRP4 Missense_Mutation p.E121D 0.40 tolerated(0.44) benign(0.001) TCGA-DK-A6AW-01 7 37955813 37955813 C T SFRP4 Silent p.E109E 0.40 TCGA-DK-A6AW-01 7 38725475 38725475 T G FAM183B Missense_Mutation p.K44T 0.48 deleterious(0.03) possibly_damaging(0.816) TCGA-DK-A6AW-01 7 38835198 38835198 A C VPS41 Missense_Mutation p.F195C 0.48 deleterious(0) possibly_damaging(0.471) TCGA-DK-A6AW-01 7 38860835 38860835 C A VPS41 Nonsense_Mutation p.E118* 0.45 TCGA-DK-A6AW-01 7 40102689 40102689 G T CDK13 Nonsense_Mutation p.E924* 0.35 TCGA-DK-A6AW-01 7 40132607 40132607 G A CDK13 Silent p.S1153S 0.53 TCGA-DK-A6AW-01 7 40900030 40900030 C T SUGCT Silent p.I456I 0.50 TCGA-DK-A6AW-01 7 42004864 42004864 G A GLI3 Silent p.D1269D 0.51 TCGA-DK-A6AW-01 7 42958785 42958785 G A PSMA2 Intron 0.43 TCGA-DK-A6AW-01 7 43540360 43540360 C T HECW1 Missense_Mutation p.A1167V 0.37 tolerated(0.14) benign(0.029) TCGA-DK-A6AW-01 7 44100395 44100395 C T DBNL Silent p.S400S 0.38 TCGA-DK-A6AW-01 7 45003754 45003754 C T MYO1G Missense_Mutation p.R880H 0.42 tolerated(0.08) probably_damaging(0.999) TCGA-DK-A6AW-01 7 45005249 45005249 C T MYO1G Missense_Mutation p.A790T 0.42 tolerated(0.6) benign(0.033) TCGA-DK-A6AW-01 7 47886612 47886612 T G PKD1L1 Missense_Mutation p.N1673T 0.49 deleterious(0) possibly_damaging(0.805) TCGA-DK-A6AW-01 7 47968885 47968885 A C PKD1L1 Missense_Mutation p.F326V 0.22 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 7 48148054 48148054 G T UPP1 3'UTR 0.21 TCGA-DK-A6AW-01 7 48311733 48311733 G T ABCA13 Nonsense_Mutation p.E824* 0.50 TCGA-DK-A6AW-01 7 48443374 48443374 T G ABCA13 Missense_Mutation p.F3990V 0.55 probably_damaging(0.981) TCGA-DK-A6AW-01 7 48556371 48556371 C T ABCA13 Missense_Mutation p.S4564L 0.41 probably_damaging(0.93) TCGA-DK-A6AW-01 7 4900675 4900675 C A PAPOLB Missense_Mutation p.R255I 0.43 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 7 4949654 4949654 C A MMD2 Splice_Site p.X156_splice 0.40 TCGA-DK-A6AW-01 7 50467859 50467859 C T IKZF1 Missense_Mutation p.A323V 0.27 deleterious(0.04) benign(0.01) TCGA-DK-A6AW-01 7 50513441 50513441 T G FIGNL1 Missense_Mutation p.E515D 0.48 tolerated(0.19) benign(0.201) TCGA-DK-A6AW-01 7 51096733 51096733 G T COBL Nonsense_Mutation p.S687* 0.38 TCGA-DK-A6AW-01 7 5410102 5410102 C T TNRC18 Missense_Mutation p.E1375K 0.67 benign(0.014) TCGA-DK-A6AW-01 7 55241721 55241721 C T EGFR Silent p.F723F 0.37 TCGA-DK-A6AW-01 7 55499001 55499001 G A LANCL2 Silent p.S447S 0.37 TCGA-DK-A6AW-01 7 55863736 55863736 C A SEPT14 Missense_Mutation p.R390M 0.37 tolerated(0.4) benign(0.001) TCGA-DK-A6AW-01 7 55914242 55914242 C T SEPT14 Missense_Mutation p.R48Q 0.06 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 7 56007096 56007096 C A ZNF713 Silent p.I230I 0.45 TCGA-DK-A6AW-01 7 56148986 56148986 C T PHKG1 Missense_Mutation p.A341T 0.46 deleterious(0.03) benign(0.102) TCGA-DK-A6AW-01 7 57188088 57188088 C A ZNF479 Missense_Mutation p.R345I 0.29 tolerated(0.58) benign(0.057) TCGA-DK-A6AW-01 7 57188172 57188172 C T ZNF479 Missense_Mutation p.R317K 0.43 tolerated(0.46) benign(0.03) TCGA-DK-A6AW-01 7 5967904 5967904 C A RSPH10B Missense_Mutation p.E785D 0.29 tolerated(0.14) benign(0.424) TCGA-DK-A6AW-01 7 63538422 63538422 G T ZNF727 Missense_Mutation p.R332I 0.56 tolerated(0.37) probably_damaging(0.991) TCGA-DK-A6AW-01 7 6369932 6369932 C T FAM220A 3'UTR 0.35 TCGA-DK-A6AW-01 7 63726503 63726503 C A ZNF679 Silent p.V164V 0.68 TCGA-DK-A6AW-01 7 63982106 63982106 T G ZNF680 Missense_Mutation p.K342N 0.40 tolerated(0.15) benign(0.316) TCGA-DK-A6AW-01 7 64168350 64168350 A G ZNF107 Silent p.E556E 0.46 TCGA-DK-A6AW-01 7 64377989 64377989 G T ZNF273 Nonsense_Mutation p.E45* 0.38 TCGA-DK-A6AW-01 7 6470180 6470180 G A DAGLB Missense_Mutation p.A287V 0.54 deleterious(0) benign(0.119) TCGA-DK-A6AW-01 7 6476109 6476109 G A DAGLB Silent p.R101R 0.46 TCGA-DK-A6AW-01 7 6730700 6730700 G A ZNF12 Nonsense_Mutation p.R625* 0.39 TCGA-DK-A6AW-01 7 72658498 72658498 G A GTF2IRD2P1 RNA 0.42 TCGA-DK-A6AW-01 7 73098226 73098226 T G WBSCR22 Intron 0.51 TCGA-DK-A6AW-01 7 73106965 73106965 A C WBSCR22 Missense_Mutation p.N167H 0.49 deleterious(0.01) possibly_damaging(0.885) TCGA-DK-A6AW-01 7 75046072 75046072 G T POM121C 3'UTR 0.60 TCGA-DK-A6AW-01 7 75517670 75517670 G T RHBDD2 3'UTR 0.38 TCGA-DK-A6AW-01 7 7557462 7557462 C T COL28A1 Missense_Mutation p.A274T 0.44 tolerated(0.07) benign(0.038) TCGA-DK-A6AW-01 7 77649127 77649127 T C MAGI2 Silent p.E1291E 0.42 TCGA-DK-A6AW-01 7 80303447 80303447 C T CD36 Missense_Mutation p.S468L 0.47 tolerated(0.14) benign(0.003) TCGA-DK-A6AW-01 7 80545994 80545994 C A SEMA3C Splice_Site p.X35_splice 0.38 TCGA-DK-A6AW-01 7 81978898 81978898 T C CACNA2D1 Missense_Mutation p.N55D 0.47 tolerated(0.43) benign(0.001) TCGA-DK-A6AW-01 7 82785128 82785128 C T PCLO Missense_Mutation p.D277N 0.34 unknown(0) TCGA-DK-A6AW-01 7 84642104 84642104 C T SEMA3D Missense_Mutation p.E588K 0.39 tolerated(0.34) benign(0.017) TCGA-DK-A6AW-01 7 86416107 86416107 C T GRM3 Silent p.F333F 0.51 TCGA-DK-A6AW-01 7 86469140 86469140 C A GRM3 Missense_Mutation p.F770L 0.51 tolerated(0.22) possibly_damaging(0.872) TCGA-DK-A6AW-01 7 87041264 87041264 G A ABCB4 Nonsense_Mutation p.R957* 0.35 TCGA-DK-A6AW-01 7 87069069 87069069 G A ABCB4 Missense_Mutation p.R549C 0.43 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 7 87179797 87179797 C T ABCB1 Missense_Mutation p.R404Q 0.50 deleterious(0) probably_damaging(0.983) TCGA-DK-A6AW-01 7 87407141 87407141 C T RUNDC3B Nonsense_Mutation p.R293* 0.58 TCGA-DK-A6AW-01 7 88962787 88962787 G T ZNF804B Missense_Mutation p.S164I 0.43 tolerated(0.06) possibly_damaging(0.878) TCGA-DK-A6AW-01 7 88963346 88963346 G T ZNF804B Missense_Mutation p.K350N 0.48 tolerated(0.56) possibly_damaging(0.701) TCGA-DK-A6AW-01 7 89856723 89856723 T G STEAP2 Missense_Mutation p.F311V 0.58 tolerated(0.27) benign(0.345) TCGA-DK-A6AW-01 7 89894677 89894677 C A C7orf63 Nonsense_Mutation p.S140* 0.38 TCGA-DK-A6AW-01 7 89936245 89936245 G T C7orf63 Nonsense_Mutation p.E766* 0.52 TCGA-DK-A6AW-01 7 90895665 90895665 C T FZD1 Silent p.F490F 0.40 TCGA-DK-A6AW-01 7 91631616 91631616 T C AKAP9 Silent p.T795T 0.42 TCGA-DK-A6AW-01 7 91727456 91727456 C A AKAP9 Missense_Mutation p.F3547L 0.38 probably_damaging(0.994) TCGA-DK-A6AW-01 7 91842712 91842712 G T KRIT1 Missense_Mutation p.L608I 0.31 tolerated(0.08) possibly_damaging(0.832) TCGA-DK-A6AW-01 7 91867005 91867005 A C KRIT1 Missense_Mutation p.F111V 0.39 deleterious(0) benign(0.151) TCGA-DK-A6AW-01 7 92098432 92098432 G A ERVW-1 Nonsense_Mutation p.R422* 0.44 TCGA-DK-A6AW-01 7 92098537 92098537 C A ERVW-1 Missense_Mutation p.D387Y 0.56 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 7 92118621 92118621 C A PEX1 Missense_Mutation p.K1251N 0.52 tolerated(0.16) possibly_damaging(0.562) TCGA-DK-A6AW-01 7 92131273 92131273 C T PEX1 Missense_Mutation p.D783N 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 7 92355089 92355089 G T CDK6 Missense_Mutation p.L130I 0.06 deleterious(0.02) benign(0.416) TCGA-DK-A6AW-01 7 92730826 92730826 G A SAMD9 Missense_Mutation p.R1529C 0.38 deleterious(0) possibly_damaging(0.87) TCGA-DK-A6AW-01 7 92731354 92731354 T G SAMD9 Missense_Mutation p.K1353Q 0.52 tolerated(0.31) possibly_damaging(0.525) TCGA-DK-A6AW-01 7 92731658 92731658 T G SAMD9 Missense_Mutation p.K1251N 0.46 tolerated(0.1) benign(0.01) TCGA-DK-A6AW-01 7 92731862 92731862 C T SAMD9 Silent p.P1183P 0.41 TCGA-DK-A6AW-01 7 92732941 92732941 G A SAMD9 Nonsense_Mutation p.R824* 0.43 TCGA-DK-A6AW-01 7 92733446 92733446 G T SAMD9 Silent p.I655I 0.40 TCGA-DK-A6AW-01 7 92761557 92761557 C A SAMD9L Missense_Mutation p.R1243I 0.41 tolerated(0.11) benign(0.104) TCGA-DK-A6AW-01 7 92763661 92763661 T G SAMD9L Missense_Mutation p.K542Q 0.60 deleterious(0) possibly_damaging(0.899) TCGA-DK-A6AW-01 7 92935287 92935287 G T CCDC132 Nonsense_Mutation p.E534* 0.45 TCGA-DK-A6AW-01 7 93108733 93108733 C A CALCR Missense_Mutation p.K64N 0.48 tolerated(0.71) possibly_damaging(0.56) TCGA-DK-A6AW-01 7 94147568 94147568 G T CASD1 Missense_Mutation p.R95I 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 7 94232716 94232716 T G SGCE Silent p.R237R 0.29 TCGA-DK-A6AW-01 7 94293001 94293001 C T PEG10 Nonsense_Mutation p.R45* 0.47 TCGA-DK-A6AW-01 7 94539495 94539495 C T PPP1R9A Nonsense_Mutation p.R24* 0.41 TCGA-DK-A6AW-01 7 95115344 95115344 T G ASB4 Missense_Mutation p.F21V 0.53 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 7 95165776 95165776 A G ASB4 Missense_Mutation p.K336E 0.50 tolerated(0.84) benign(0.008) TCGA-DK-A6AW-01 7 95818909 95818909 A C SLC25A13 Missense_Mutation p.L278V 0.49 tolerated(0.16) benign(0.117) TCGA-DK-A6AW-01 7 97822237 97822237 C T LMTK2 Silent p.F820F 0.48 TCGA-DK-A6AW-01 7 97823422 97823422 C T LMTK2 Silent p.F1215F 0.40 TCGA-DK-A6AW-01 7 99084233 99084233 G T ZNF789 Nonsense_Mutation p.E134* 0.45 TCGA-DK-A6AW-01 7 99084495 99084495 G T ZNF789 Missense_Mutation p.R221I 0.37 deleterious(0.01) probably_damaging(0.969) TCGA-DK-A6AW-01 7 99370309 99370309 A C CYP3A4 Missense_Mutation p.F74L 0.42 tolerated(1) benign(0.013) TCGA-DK-A6AW-01 7 99662125 99662125 G A ZSCAN21 Missense_Mutation p.R436K 0.47 deleterious(0.03) probably_damaging(0.997) TCGA-DK-A6AW-01 7 99758204 99758204 G A GAL3ST4 Missense_Mutation p.R270C 0.47 deleterious(0.02) benign(0.13) TCGA-DK-A6AW-01 8 101153839 101153839 C A FBXO43 Nonsense_Mutation p.E215* 0.65 TCGA-DK-A6AW-01 8 101154329 101154329 C T FBXO43 Silent p.A51A 0.49 TCGA-DK-A6AW-01 8 102381646 102381646 C T NACAP1 RNA 0.40 TCGA-DK-A6AW-01 8 102570673 102570673 A G GRHL2 Missense_Mutation p.Q104R 0.46 tolerated(0.35) benign(0.077) TCGA-DK-A6AW-01 8 102731642 102731642 G A NCALD Silent p.F72F 0.38 TCGA-DK-A6AW-01 8 103277475 103277475 C T UBR5 Missense_Mutation p.R2485Q 0.55 tolerated(0.53) possibly_damaging(0.78) TCGA-DK-A6AW-01 8 103564043 103564043 G A ODF1 Missense_Mutation p.E30K 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.905) TCGA-DK-A6AW-01 8 103664009 103664009 G T KLF10 Missense_Mutation p.S184Y 0.42 tolerated(0.98) benign(0.17) TCGA-DK-A6AW-01 8 104452461 104452461 C T DCAF13 Missense_Mutation p.R502C 0.48 deleterious(0.02) possibly_damaging(0.51) TCGA-DK-A6AW-01 8 10467252 10467252 C T RP1L1 Silent p.E1452E 0.46 TCGA-DK-A6AW-01 8 10467883 10467883 C A RP1L1 Missense_Mutation p.R1242I 0.53 benign(0.262) TCGA-DK-A6AW-01 8 10468143 10468143 C A RP1L1 Missense_Mutation p.K1155N 0.36 benign(0.19) TCGA-DK-A6AW-01 8 104709502 104709502 G A RIMS2 Missense_Mutation p.R122Q 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-A6AW-01 8 105456549 105456549 C A DPYS Silent p.V240V 0.48 TCGA-DK-A6AW-01 8 105502845 105502845 A C LRP12 3'UTR 0.49 TCGA-DK-A6AW-01 8 10557877 10557877 G A C8orf74 Missense_Mutation p.A261T 0.45 tolerated(0.19) benign(0.08) TCGA-DK-A6AW-01 8 108913375 108913375 C A RSPO2 Missense_Mutation p.K220N 0.43 tolerated(0.35) benign(0.003) TCGA-DK-A6AW-01 8 110394707 110394707 T C PKHD1L1 Silent p.D108D 0.42 TCGA-DK-A6AW-01 8 11189355 11189355 C T SLC35G5 Missense_Mutation p.P247L 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 11301723 11301723 C T FAM167A Silent p.E66E 0.47 TCGA-DK-A6AW-01 8 113347615 113347615 G T CSMD3 Missense_Mutation p.L2370I 0.46 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A6AW-01 8 113349921 113349921 C T CSMD3 Missense_Mutation p.R2231Q 0.54 tolerated(0.39) probably_damaging(0.952) TCGA-DK-A6AW-01 8 113353781 113353781 T C CSMD3 Missense_Mutation p.T2193A 0.36 deleterious(0) probably_damaging(0.944) TCGA-DK-A6AW-01 8 113418903 113418903 C T CSMD3 Missense_Mutation p.G1887R 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 113649124 113649124 G A CSMD3 Nonsense_Mutation p.R1213* 0.36 TCGA-DK-A6AW-01 8 113668425 113668425 C T CSMD3 Missense_Mutation p.D988N 0.34 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 113812462 113812462 C A CSMD3 Missense_Mutation p.S634I 0.44 deleterious(0.01) possibly_damaging(0.557) TCGA-DK-A6AW-01 8 114290889 114290889 G T CSMD3 Missense_Mutation p.S149Y 0.35 tolerated(0.1) possibly_damaging(0.612) TCGA-DK-A6AW-01 8 117875445 117875445 G T RAD21 Silent p.I66I 0.51 TCGA-DK-A6AW-01 8 117875450 117875450 G A RAD21 Nonsense_Mutation p.R65* 0.43 TCGA-DK-A6AW-01 8 120631537 120631537 C T ENPP2 Silent p.S142S 0.28 TCGA-DK-A6AW-01 8 120774725 120774725 G A TAF2 Missense_Mutation p.L830F 0.42 deleterious(0.03) possibly_damaging(0.796) TCGA-DK-A6AW-01 8 120855032 120855032 C A DSCC1 Missense_Mutation p.K251N 0.36 tolerated(0.07) benign(0.023) TCGA-DK-A6AW-01 8 121293198 121293198 G T COL14A1 Missense_Mutation p.D1242Y 0.66 deleterious(0.05) possibly_damaging(0.823) TCGA-DK-A6AW-01 8 124054326 124054326 C T DERL1 Missense_Mutation p.A13T 0.40 tolerated(0.62) benign(0.003) TCGA-DK-A6AW-01 8 12583269 12583269 G A LONRF1 Silent p.F710F 0.38 TCGA-DK-A6AW-01 8 125988747 125988747 G T ZNF572 Missense_Mutation p.E79D 0.35 tolerated(0.12) benign(0.002) TCGA-DK-A6AW-01 8 12870344 12870344 C T KIAA1456 Silent p.F102F 0.33 TCGA-DK-A6AW-01 8 131812678 131812678 G A ADCY8 Silent p.F1018F 0.48 TCGA-DK-A6AW-01 8 131949322 131949322 A C ADCY8 Missense_Mutation p.I493S 0.33 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 8 132962330 132962330 C T EFR3A Nonsense_Mutation p.R161* 0.44 TCGA-DK-A6AW-01 8 132998454 132998454 G A EFR3A Missense_Mutation p.R628Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 8 133196584 133196584 C T KCNQ3 Missense_Mutation p.E170K 0.42 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 8 13357102 13357102 G T DLC1 Missense_Mutation p.S160Y 0.49 deleterious_low_confidence(0.03) benign(0.157) TCGA-DK-A6AW-01 8 13357385 13357385 G T DLC1 Missense_Mutation p.H66N 0.49 deleterious_low_confidence(0.02) benign(0.04) TCGA-DK-A6AW-01 8 133900727 133900727 A G TG Missense_Mutation p.H892R 0.42 deleterious(0.02) probably_damaging(0.913) TCGA-DK-A6AW-01 8 133909963 133909963 C T TG Missense_Mutation p.S1024L 0.50 tolerated(0.5) benign(0.011) TCGA-DK-A6AW-01 8 135615006 135615006 C T ZFAT Missense_Mutation p.R319H 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 8 139144875 139144875 C T FAM135B Silent p.E1394E 0.44 TCGA-DK-A6AW-01 8 141756901 141756901 C A PTK2 Missense_Mutation p.E492D 0.41 tolerated(0.2) benign(0.002) TCGA-DK-A6AW-01 8 142221819 142221819 A C SLC45A4 Intron 0.38 TCGA-DK-A6AW-01 8 143762797 143762797 C T PSCA Silent p.C26C 0.50 TCGA-DK-A6AW-01 8 143846064 143846064 A C LYNX1 Missense_Mutation p.S119A 0.45 deleterious(0.01) probably_damaging(0.978) TCGA-DK-A6AW-01 8 144126224 144126224 G T C8orf31 Missense_Mutation p.E115D 0.35 deleterious_low_confidence(0) benign(0.388) TCGA-DK-A6AW-01 8 144332724 144332724 C T ZFP41 3'UTR 0.33 TCGA-DK-A6AW-01 8 144358716 144358716 T C GLI4 Silent p.G291G 0.60 TCGA-DK-A6AW-01 8 144464034 144464034 T C RHPN1 Missense_Mutation p.W565R 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 145059660 145059660 C T PARP10 Missense_Mutation p.R198H 0.39 tolerated(0.05) possibly_damaging(0.908) TCGA-DK-A6AW-01 8 145690303 145690303 A C CYHR1 5'UTR 0.45 TCGA-DK-A6AW-01 8 145948552 145948552 A C ZNF251 Missense_Mutation p.L165V 0.46 tolerated(0.6) benign(0.364) TCGA-DK-A6AW-01 8 146157789 146157789 C T ZNF16 Silent p.Q128Q 0.44 TCGA-DK-A6AW-01 8 146202799 146202799 C T ZNF252P RNA 0.56 TCGA-DK-A6AW-01 8 16021607 16021607 A C MSR1 Missense_Mutation p.S262A 0.51 tolerated(0.09) probably_damaging(0.997) TCGA-DK-A6AW-01 8 16026069 16026069 G T MSR1 Silent p.I176I 0.45 TCGA-DK-A6AW-01 8 16963044 16963044 A T MICU3 Missense_Mutation p.N403I 0.20 deleterious(0.01) benign(0.258) TCGA-DK-A6AW-01 8 17094804 17094804 T G CNOT7 Silent p.G130G 0.49 TCGA-DK-A6AW-01 8 17402085 17402085 T G SLC7A2 Missense_Mutation p.F208V 0.38 tolerated(0.06) possibly_damaging(0.89) TCGA-DK-A6AW-01 8 18080421 18080421 A G NAT1 Missense_Mutation p.T351A 0.53 deleterious(0) possibly_damaging(0.831) TCGA-DK-A6AW-01 8 19805714 19805714 G A LPL Missense_Mutation p.E38K 0.42 tolerated(0.31) benign(0.274) TCGA-DK-A6AW-01 8 20077858 20077858 G T ATP6V1B2 Missense_Mutation p.R494I 0.35 deleterious(0) probably_damaging(0.921) TCGA-DK-A6AW-01 8 2090323 2090323 G T MYOM2 Splice_Site p.X1342_splice 0.39 TCGA-DK-A6AW-01 8 21892049 21892049 A C NPM2 Missense_Mutation p.E187A 0.39 tolerated(0.9) benign(0) TCGA-DK-A6AW-01 8 22102619 22102619 G T POLR3D 5'Flank 0.25 TCGA-DK-A6AW-01 8 24261575 24261575 C T ADAMDEC1 Silent p.C460C 0.47 TCGA-DK-A6AW-01 8 24810237 24810237 C A CTD-2168K21.2 5'Flank 0.54 TCGA-DK-A6AW-01 8 24811806 24811806 T G CTD-2168K21.2 5'Flank 0.55 TCGA-DK-A6AW-01 8 26238551 26238551 A G BNIP3L 5'Flank 0.45 TCGA-DK-A6AW-01 8 26366201 26366201 G A PNMA2 Missense_Mutation p.T24M 0.52 tolerated(0.18) benign(0.002) TCGA-DK-A6AW-01 8 26628125 26628125 G A ADRA1A Silent p.L314L 0.44 TCGA-DK-A6AW-01 8 27294682 27294682 A G PTK2B Missense_Mutation p.D462G 0.43 deleterious(0.01) benign(0.084) TCGA-DK-A6AW-01 8 27528594 27528594 G A SCARA3 Missense_Mutation p.R516Q 0.46 deleterious(0.05) possibly_damaging(0.553) TCGA-DK-A6AW-01 8 27888774 27888774 A C NUGGC Missense_Mutation p.F632V 0.04 deleterious(0.01) possibly_damaging(0.728) TCGA-DK-A6AW-01 8 28638404 28638404 G A INTS9 Silent p.F402F 0.40 TCGA-DK-A6AW-01 8 28716981 28716981 T G INTS9 Missense_Mutation p.N37H 0.41 tolerated(0.58) benign(0.001) TCGA-DK-A6AW-01 8 28827631 28827631 G A HMBOX1 Missense_Mutation p.R32Q 0.46 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 8 28989961 28989961 C T KIF13B Missense_Mutation p.E936K 0.46 deleterious(0) possibly_damaging(0.54) TCGA-DK-A6AW-01 8 29203154 29203154 G A DUSP4 Intron 0.50 TCGA-DK-A6AW-01 8 2944670 2944670 G A CSMD1 Nonsense_Mutation p.R2475* 0.47 TCGA-DK-A6AW-01 8 3047537 3047537 G A CSMD1 Silent p.F1765F 0.40 TCGA-DK-A6AW-01 8 30694786 30694786 G T TEX15 Nonsense_Mutation p.S2622* 0.54 TCGA-DK-A6AW-01 8 30700091 30700091 G A TEX15 Missense_Mutation p.A2148V 0.40 deleterious(0) probably_damaging(0.951) TCGA-DK-A6AW-01 8 30700931 30700931 A C TEX15 Missense_Mutation p.F1868C 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 8 30702046 30702046 G T TEX15 Silent p.I1496I 0.36 TCGA-DK-A6AW-01 8 30703414 30703414 G T TEX15 Missense_Mutation p.F1040L 0.47 tolerated(0.12) probably_damaging(0.997) TCGA-DK-A6AW-01 8 30704285 30704285 C A TEX15 Missense_Mutation p.S750I 0.46 tolerated(0.17) benign(0.031) TCGA-DK-A6AW-01 8 30704417 30704417 A C TEX15 Missense_Mutation p.F706C 0.47 deleterious(0.05) possibly_damaging(0.891) TCGA-DK-A6AW-01 8 30705342 30705342 T C TEX15 Missense_Mutation p.T398A 0.45 tolerated(0.78) benign(0.002) TCGA-DK-A6AW-01 8 30706466 30706466 A G TEX15 Missense_Mutation p.I23T 0.48 deleterious(0.02) benign(0.046) TCGA-DK-A6AW-01 8 32618023 32618023 A G NRG1 Intron 0.27 TCGA-DK-A6AW-01 8 32618075 32618075 C A NRG1 Intron 0.55 TCGA-DK-A6AW-01 8 35631843 35631843 C T UNC5D Silent p.F835F 0.41 TCGA-DK-A6AW-01 8 38173456 38173456 C T WHSC1L1 Missense_Mutation p.D654N 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-DK-A6AW-01 8 39079146 39079146 C A ADAM32 Missense_Mutation p.S417R 0.46 tolerated(0.1) benign(0.346) TCGA-DK-A6AW-01 8 39603995 39603995 C T ADAM2 Missense_Mutation p.D724N 0.36 tolerated(0.1) unknown(0) TCGA-DK-A6AW-01 8 39872818 39872818 C A IDO2 Missense_Mutation p.F320L 0.38 tolerated(0.16) possibly_damaging(0.789) TCGA-DK-A6AW-01 8 40011362 40011362 A C C8orf4 Missense_Mutation p.K104T 0.60 deleterious_low_confidence(0) benign(0.205) TCGA-DK-A6AW-01 8 41456812 41456812 A C AGPAT6 Missense_Mutation p.K52Q 0.45 tolerated(0.07) benign(0) TCGA-DK-A6AW-01 8 41467224 41467224 C T AGPAT6 Missense_Mutation p.R96C 0.39 deleterious(0) probably_damaging(0.985) TCGA-DK-A6AW-01 8 42024874 42024874 C T AP3M2 Silent p.F332F 0.40 TCGA-DK-A6AW-01 8 52320774 52320774 G A PXDNL Missense_Mutation p.S1137L 0.41 tolerated(1) benign(0) TCGA-DK-A6AW-01 8 52320994 52320994 G T PXDNL Missense_Mutation p.L1064I 0.39 deleterious(0.05) probably_damaging(0.951) TCGA-DK-A6AW-01 8 52321374 52321374 G T PXDNL Missense_Mutation p.S937Y 0.51 deleterious(0.01) possibly_damaging(0.808) TCGA-DK-A6AW-01 8 52773416 52773416 C T PCMTD1 Missense_Mutation p.G99D 0.21 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 8 53084827 53084827 A - ST18 Frame_Shift_Del p.S198Rfs*26 0.30 TCGA-DK-A6AW-01 8 53126825 53126825 A G ST18 5'UTR 0.42 TCGA-DK-A6AW-01 8 53568833 53568833 C A RB1CC1 Nonsense_Mutation p.E1186* 0.43 TCGA-DK-A6AW-01 8 54730002 54730002 C T ATP6V1H Missense_Mutation p.R132H 0.32 deleterious(0) probably_damaging(0.91) TCGA-DK-A6AW-01 8 54963717 54963717 G T LYPLA1 Missense_Mutation p.S165Y 0.40 deleterious(0) possibly_damaging(0.738) TCGA-DK-A6AW-01 8 55537603 55537603 C A RP1 Missense_Mutation p.F387L 0.54 tolerated(1) benign(0) TCGA-DK-A6AW-01 8 55540850 55540850 G A RP1 Missense_Mutation p.E1470K 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-DK-A6AW-01 8 59409363 59409363 C A CYP7A1 Missense_Mutation p.E236D 0.48 tolerated(0.07) possibly_damaging(0.896) TCGA-DK-A6AW-01 8 59409434 59409434 C T CYP7A1 Missense_Mutation p.D213N 0.57 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 61750316 61750316 C T CHD7 Silent p.F1425F 0.40 TCGA-DK-A6AW-01 8 62212619 62212619 G T CLVS1 Missense_Mutation p.R78I 0.64 deleterious(0) probably_damaging(0.995) TCGA-DK-A6AW-01 8 62563669 62563669 C T ASPH Missense_Mutation p.E144K 0.42 tolerated_low_confidence(0.16) benign(0.096) TCGA-DK-A6AW-01 8 6302668 6302668 T G MCPH1 Missense_Mutation p.N475K 0.49 tolerated(0.22) benign(0.005) TCGA-DK-A6AW-01 8 65494217 65494217 G A BHLHE22 Silent p.K290K 0.46 TCGA-DK-A6AW-01 8 67047346 67047346 G T TRIM55 Missense_Mutation p.D155Y 0.49 deleterious(0) probably_damaging(0.918) TCGA-DK-A6AW-01 8 67488333 67488333 C A MYBL1 Missense_Mutation p.G460V 0.33 tolerated(0.3) benign(0.001) TCGA-DK-A6AW-01 8 67771771 67771771 C T SGK3 Silent p.F482F 0.48 TCGA-DK-A6AW-01 8 67793126 67793126 T G MCMDC2 Missense_Mutation p.I251S 0.40 deleterious(0) possibly_damaging(0.488) TCGA-DK-A6AW-01 8 6782315 6782315 A C DEFA6 3'UTR 0.52 TCGA-DK-A6AW-01 8 67929976 67929976 G A PPP1R42 Nonsense_Mutation p.R3* 0.44 TCGA-DK-A6AW-01 8 68170016 68170016 A G ARFGEF1 Missense_Mutation p.V826A 0.45 deleterious(0.01) probably_damaging(1) TCGA-DK-A6AW-01 8 68334861 68334861 C T CPA6 Missense_Mutation p.E398K 0.51 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 8 68396965 68396965 G T CPA6 Missense_Mutation p.F232L 0.37 deleterious(0) possibly_damaging(0.513) TCGA-DK-A6AW-01 8 68956806 68956806 G T PREX2 Missense_Mutation p.E308D 0.14 deleterious(0) probably_damaging(0.978) TCGA-DK-A6AW-01 8 68972993 68972993 G A PREX2 Missense_Mutation p.E440K 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A6AW-01 8 69688649 69688649 G T C8orf34 Nonsense_Mutation p.G474* 0.49 TCGA-DK-A6AW-01 8 69699703 69699703 T C C8orf34 Missense_Mutation p.V494A 0.48 tolerated_low_confidence(0.28) possibly_damaging(0.799) TCGA-DK-A6AW-01 8 71510443 71510443 C A TRAM1 Missense_Mutation p.D79Y 0.58 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 73480205 73480205 A G KCNB2 Missense_Mutation p.D79G 0.48 deleterious(0) probably_damaging(0.944) TCGA-DK-A6AW-01 8 73993282 73993282 C T SBSPON Silent p.P127P 0.46 TCGA-DK-A6AW-01 8 74706283 74706283 G A UBE2W 3'UTR 0.70 TCGA-DK-A6AW-01 8 75898440 75898440 G A CRISPLD1 Missense_Mutation p.R73Q 0.48 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 77617649 77617649 G T ZFHX4 Missense_Mutation p.E442D 0.37 benign(0.388) TCGA-DK-A6AW-01 8 77617900 77617900 C T ZFHX4 Missense_Mutation p.S526L 0.40 possibly_damaging(0.519) TCGA-DK-A6AW-01 8 77767157 77767157 C T ZFHX4 Missense_Mutation p.A2667V 0.35 probably_damaging(0.987) TCGA-DK-A6AW-01 8 77767552 77767552 G A ZFHX4 Missense_Mutation p.D2799N 0.38 probably_damaging(0.992) TCGA-DK-A6AW-01 8 77767750 77767750 C A ZFHX4 Missense_Mutation p.L2865I 0.52 benign(0.099) TCGA-DK-A6AW-01 8 77776627 77776627 C T ZFHX4 Silent p.C3559C 0.37 TCGA-DK-A6AW-01 8 82591399 82591399 G T IMPA1 Silent p.I147I 0.59 TCGA-DK-A6AW-01 8 82752139 82752139 G T SNX16 Missense_Mutation p.S28Y 0.42 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-DK-A6AW-01 8 86025226 86025226 C T LRRCC1 Missense_Mutation p.R146C 0.35 tolerated(0.31) benign(0.001) TCGA-DK-A6AW-01 8 8747916 8747916 T G MFHAS1 Missense_Mutation p.S885R 0.43 tolerated(0.05) benign(0.016) TCGA-DK-A6AW-01 8 8748587 8748587 C T MFHAS1 Missense_Mutation p.R661Q 0.52 deleterious(0.02) benign(0.121) TCGA-DK-A6AW-01 8 88885024 88885024 G T DCAF4L2 Missense_Mutation p.F392L 0.36 deleterious(0.01) possibly_damaging(0.507) TCGA-DK-A6AW-01 8 89053747 89053747 C A MMP16 Missense_Mutation p.R589M 0.44 deleterious(0.05) probably_damaging(0.985) TCGA-DK-A6AW-01 8 8998916 8998916 G T PPP1R3B Missense_Mutation p.F82L 0.43 tolerated(0.16) possibly_damaging(0.706) TCGA-DK-A6AW-01 8 90937227 90937227 C A OSGIN2 Missense_Mutation p.H373N 0.46 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 8 90994993 90994993 C T NBN Missense_Mutation p.R43Q 0.41 deleterious(0) probably_damaging(0.982) TCGA-DK-A6AW-01 8 92032465 92032465 C A TMEM55A Missense_Mutation p.K94N 0.40 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 8 93017372 93017372 C T RUNX1T1 Missense_Mutation p.E249K 0.51 deleterious(0.02) possibly_damaging(0.887) TCGA-DK-A6AW-01 8 94935926 94935926 C A PDP1 3'UTR 0.40 TCGA-DK-A6AW-01 8 95182706 95182706 T G CDH17 Missense_Mutation p.K329Q 0.49 tolerated(0.6) benign(0.068) TCGA-DK-A6AW-01 8 95206923 95206923 T G CDH17 5'UTR 0.55 TCGA-DK-A6AW-01 8 95538575 95538575 C A KIAA1429 Nonsense_Mutation p.E633* 0.51 TCGA-DK-A6AW-01 8 95848845 95848845 G T INTS8 Nonsense_Mutation p.E283* 0.43 TCGA-DK-A6AW-01 8 96053846 96053846 G A NDUFAF6 Missense_Mutation p.D157N 0.44 deleterious(0.01) benign(0.322) TCGA-DK-A6AW-01 8 97256283 97256283 T G MTERFD1 Missense_Mutation p.K308T 0.54 tolerated(0.15) benign(0.167) TCGA-DK-A6AW-01 8 97321824 97321824 C T PTDSS1 Silent p.R349R 0.42 TCGA-DK-A6AW-01 8 99234825 99234825 G A NIPAL2 Missense_Mutation p.T147M 0.45 tolerated(0.78) benign(0.01) TCGA-DK-A6AW-01 8 99440543 99440543 G A KCNS2 Silent p.E112E 0.46 TCGA-DK-A6AW-01 9 100249576 100249576 G A TDRD7 Missense_Mutation p.R1013Q 0.48 deleterious(0.01) probably_damaging(0.944) TCGA-DK-A6AW-01 9 100367123 100367123 G A TSTD2 Missense_Mutation p.L380F 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 9 100407406 100407406 T A NCBP1 Missense_Mutation p.F130Y 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A6AW-01 9 100418332 100418332 G A NCBP1 Silent p.P446P 0.31 TCGA-DK-A6AW-01 9 101125090 101125090 G A GABBR2 Silent p.I600I 0.52 TCGA-DK-A6AW-01 9 101748238 101748238 C T COL15A1 Silent p.F164F 0.45 TCGA-DK-A6AW-01 9 101777744 101777744 G A COL15A1 Missense_Mutation p.E467K 0.40 tolerated_low_confidence(0.39) benign(0.009) TCGA-DK-A6AW-01 9 101810074 101810074 A G COL15A1 Missense_Mutation p.K896E 0.40 tolerated(0.71) probably_damaging(0.989) TCGA-DK-A6AW-01 9 101900191 101900191 G T TGFBR1 Nonsense_Mutation p.E209* 0.44 TCGA-DK-A6AW-01 9 101900373 101900373 T G TGFBR1 Splice_Site p.X269_splice 0.54 TCGA-DK-A6AW-01 9 102991957 102991957 T G INVS Missense_Mutation p.W155G 0.40 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 9 103204233 103204233 G A MSANTD3 Missense_Mutation p.E5K 0.40 tolerated_low_confidence(0.09) probably_damaging(0.931) TCGA-DK-A6AW-01 9 103212879 103212879 G T MSANTD3 Missense_Mutation p.E153D 0.44 tolerated_low_confidence(0.26) benign(0) TCGA-DK-A6AW-01 9 103338944 103338944 G T TMEFF1 3'UTR 0.31 TCGA-DK-A6AW-01 9 104153098 104153098 C A MRPL50 Nonsense_Mutation p.E43* 0.43 TCGA-DK-A6AW-01 9 106857720 106857720 G A SMC2 Missense_Mutation p.E19K 0.43 deleterious(0) benign(0.33) TCGA-DK-A6AW-01 9 106864352 106864352 G A SMC2 Missense_Mutation p.A250T 0.41 tolerated(0.36) benign(0.021) TCGA-DK-A6AW-01 9 106864367 106864367 G T SMC2 Nonsense_Mutation p.E255* 0.44 TCGA-DK-A6AW-01 9 106901537 106901537 A G SMC2 Missense_Mutation p.I1179V 0.23 tolerated_low_confidence(1) unknown(0) TCGA-DK-A6AW-01 9 107298109 107298109 C A OR13C3 Missense_Mutation p.R329I 0.43 deleterious(0) probably_damaging(0.98) TCGA-DK-A6AW-01 9 107331969 107331969 T G OR13C8 Missense_Mutation p.I174S 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 9 107367222 107367222 G A OR13C2 Silent p.S229S 0.48 TCGA-DK-A6AW-01 9 107513294 107513294 C T NIPSNAP3A Missense_Mutation p.R40C 0.45 tolerated(0.08) benign(0.44) TCGA-DK-A6AW-01 9 108127810 108127810 C T SLC44A1 Missense_Mutation p.R434C 0.39 tolerated(0.09) benign(0.271) TCGA-DK-A6AW-01 9 109691491 109691491 G T ZNF462 Missense_Mutation p.K1766N 0.53 probably_damaging(0.937) TCGA-DK-A6AW-01 9 111644045 111644045 C T IKBKAP Missense_Mutation p.V1096I 0.45 tolerated(1) benign(0.009) TCGA-DK-A6AW-01 9 112018118 112018118 T G EPB41L4B Missense_Mutation p.K312T 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6AW-01 9 112190912 112190912 G A PTPN3 Nonsense_Mutation p.R273* 0.52 TCGA-DK-A6AW-01 9 113170729 113170729 G A SVEP1 Missense_Mutation p.P2384L 0.46 possibly_damaging(0.685) TCGA-DK-A6AW-01 9 113170848 113170848 A G SVEP1 Silent p.V2344V 0.45 TCGA-DK-A6AW-01 9 113562941 113562941 C T MUSK Silent p.N761N 0.48 TCGA-DK-A6AW-01 9 114305577 114305577 C A ZNF483 3'UTR 0.50 TCGA-DK-A6AW-01 9 114411923 114411923 A C DNAJC25 Missense_Mutation p.K227T 0.42 tolerated(0.06) probably_damaging(0.96) TCGA-DK-A6AW-01 9 114874078 114874078 G A SUSD1 Missense_Mutation p.R343C 0.42 deleterious(0.02) possibly_damaging(0.462) TCGA-DK-A6AW-01 9 114875085 114875085 T C SUSD1 Missense_Mutation p.N317S 0.13 tolerated(0.59) benign(0.009) TCGA-DK-A6AW-01 9 115024852 115024852 T C PTBP3 Missense_Mutation p.S161G 0.43 tolerated(0.11) benign(0.008) TCGA-DK-A6AW-01 9 115181233 115181233 A C HSDL2 Missense_Mutation p.K198T 0.31 deleterious(0) possibly_damaging(0.519) TCGA-DK-A6AW-01 9 115421725 115421725 A G KIAA1958 Silent p.K509K 0.47 TCGA-DK-A6AW-01 9 115652725 115652725 A C SLC46A2 Missense_Mutation p.I79M 0.43 tolerated(0.64) probably_damaging(1) TCGA-DK-A6AW-01 9 116094323 116094323 T C WDR31 5'UTR 0.40 TCGA-DK-A6AW-01 9 116171188 116171188 G A POLE3 Missense_Mutation p.S116L 0.72 deleterious(0.01) unknown(0) TCGA-DK-A6AW-01 9 116183392 116183392 T C C9orf43 Silent p.L119L 0.35 TCGA-DK-A6AW-01 9 117047051 117047051 C T COL27A1 Silent p.G1327G 0.41 TCGA-DK-A6AW-01 9 117386695 117386695 G A C9orf91 Missense_Mutation p.D58N 0.67 tolerated(0.3) probably_damaging(0.921) TCGA-DK-A6AW-01 9 117568336 117568336 G A TNFSF15 5'UTR 0.46 TCGA-DK-A6AW-01 9 117666448 117666448 G A TNFSF8 Silent p.V156V 0.42 TCGA-DK-A6AW-01 9 117835998 117835998 C A TNC Missense_Mutation p.R1033I 0.45 tolerated(0.09) possibly_damaging(0.456) TCGA-DK-A6AW-01 9 117840406 117840406 G A TNC Silent p.I830I 0.53 TCGA-DK-A6AW-01 9 117848674 117848674 G A TNC Missense_Mutation p.R446W 0.43 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 9 118997819 118997819 C A PAPPA Missense_Mutation p.L879I 0.44 tolerated(0.05) benign(0.364) TCGA-DK-A6AW-01 9 121929312 121929312 C T BRINP1 3'UTR 0.43 TCGA-DK-A6AW-01 9 122004417 122004417 C T BRINP1 Missense_Mutation p.A163T 0.53 tolerated(1) benign(0.222) TCGA-DK-A6AW-01 9 123202077 123202077 C A CDK5RAP2 Nonsense_Mutation p.E1108* 0.47 TCGA-DK-A6AW-01 9 123550224 123550224 A C FBXW2 Missense_Mutation p.L105V 0.46 tolerated(0.32) probably_damaging(0.991) TCGA-DK-A6AW-01 9 123780127 123780127 A C C5 Missense_Mutation p.L504V 0.51 tolerated(0.25) benign(0.259) TCGA-DK-A6AW-01 9 123797114 123797114 G T C5 Missense_Mutation p.S184Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-DK-A6AW-01 9 124922282 124922282 G A MORN5 Missense_Mutation p.E11K 0.40 tolerated(0.45) benign(0.033) TCGA-DK-A6AW-01 9 125281723 125281723 T C OR1J4 Missense_Mutation p.Y102H 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.573) TCGA-DK-A6AW-01 9 125316406 125316406 A G OR1N2 Missense_Mutation p.K320E 0.37 deleterious(0.01) benign(0.339) TCGA-DK-A6AW-01 9 125512030 125512030 T G OR1L6 5'Flank 0.47 TCGA-DK-A6AW-01 9 125585446 125585446 C T PDCL Missense_Mutation p.R68H 0.44 deleterious(0) probably_damaging(0.986) TCGA-DK-A6AW-01 9 126777584 126777584 C T LHX2 Silent p.F169F 0.44 TCGA-DK-A6AW-01 9 12709315 12709315 C A TYRP1 3'UTR 0.50 TCGA-DK-A6AW-01 9 127975775 127975775 G A RABEPK Missense_Mutation p.R113Q 0.46 tolerated(0.17) benign(0.314) TCGA-DK-A6AW-01 9 127996233 127996233 G A RABEPK Missense_Mutation p.D365N 0.45 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 9 127999395 127999395 T C HSPA5 Missense_Mutation p.T481A 0.37 deleterious_low_confidence(0) benign(0.232) TCGA-DK-A6AW-01 9 129148859 129148859 T C MVB12B Silent p.L111L 0.33 TCGA-DK-A6AW-01 9 129871035 129871035 C A ANGPTL2 5'UTR 0.55 TCGA-DK-A6AW-01 9 130216787 130216787 C T LRSAM1 5'UTR 0.33 TCGA-DK-A6AW-01 9 130635011 130635011 C A AK1 Missense_Mutation p.K55N 0.50 tolerated(0.05) benign(0.082) TCGA-DK-A6AW-01 9 130965897 130965897 A C DNM1 Missense_Mutation p.N50H 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 9 131362388 131362388 G A SPTAN1 Silent p.P1191P 0.36 TCGA-DK-A6AW-01 9 131503882 131503882 C A ZER1 Nonsense_Mutation p.E557* 0.51 TCGA-DK-A6AW-01 9 131698892 131698892 C T PHYHD1 Missense_Mutation p.P135S 0.40 deleterious(0.01) possibly_damaging(0.686) TCGA-DK-A6AW-01 9 131707942 131707942 G A DOLK 3'UTR 0.41 TCGA-DK-A6AW-01 9 132566606 132566606 A C TOR1B Missense_Mutation p.K152Q 0.48 tolerated(0.44) benign(0.026) TCGA-DK-A6AW-01 9 132869789 132869789 T C GPR107 Missense_Mutation p.L426S 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 9 133799642 133799642 G T FIBCD1 Missense_Mutation p.P232T 0.44 deleterious(0.04) benign(0.04) TCGA-DK-A6AW-01 9 134735934 134735934 G A MED27 Silent p.C309C 0.50 TCGA-DK-A6AW-01 9 135150764 135150764 T G SETX Missense_Mutation p.I2327L 0.42 tolerated(0.08) benign(0.378) TCGA-DK-A6AW-01 9 135554724 135554724 T G GTF3C4 Missense_Mutation p.F573C 0.39 deleterious(0.01) benign(0.387) TCGA-DK-A6AW-01 9 135763713 135763713 C T C9orf9 Silent p.D128D 0.39 TCGA-DK-A6AW-01 9 135865146 135865146 C T GFI1B Silent p.C222C 0.27 TCGA-DK-A6AW-01 9 135941974 135941974 C T CEL Missense_Mutation p.A202V 0.24 deleterious(0.02) possibly_damaging(0.852) TCGA-DK-A6AW-01 9 135945950 135945950 C T CEL Silent p.F466F 0.24 TCGA-DK-A6AW-01 9 135961718 135961718 G A CELP RNA 0.60 TCGA-DK-A6AW-01 9 136380649 136380649 G A TMEM8C Silent p.F160F 0.48 TCGA-DK-A6AW-01 9 136637093 136637093 G T VAV2 Missense_Mutation p.F737L 0.44 deleterious(0.01) probably_damaging(0.959) TCGA-DK-A6AW-01 9 137779267 137779267 G T FCN2 3'UTR 0.50 TCGA-DK-A6AW-01 9 138011385 138011385 C T OLFM1 Silent p.F255F 0.43 TCGA-DK-A6AW-01 9 138377994 138377994 G A PPP1R26 Silent p.A546A 0.42 TCGA-DK-A6AW-01 9 138416998 138416998 G A LCN1 Missense_Mutation p.D176N 0.41 tolerated(0.7) benign(0.018) TCGA-DK-A6AW-01 9 138669336 138669336 C T KCNT1 Silent p.I834I 0.35 TCGA-DK-A6AW-01 9 139250838 139250838 G A GPSM1 Missense_Mutation p.D553N 0.54 tolerated(0.1) probably_damaging(0.956) TCGA-DK-A6AW-01 9 139370234 139370234 C T SEC16A Missense_Mutation p.E612K 0.54 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 9 139370681 139370681 C A SEC16A Nonsense_Mutation p.E463* 0.41 TCGA-DK-A6AW-01 9 139700978 139700978 A C CCDC183 Missense_Mutation p.M378L 0.39 tolerated(1) benign(0.002) TCGA-DK-A6AW-01 9 139934308 139934308 T G NPDC1 Missense_Mutation p.E298D 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 9 140262393 140262393 C A EXD3 Nonsense_Mutation p.E171* 0.36 TCGA-DK-A6AW-01 9 140444638 140444638 C A PNPLA7 Missense_Mutation p.E4D 0.44 tolerated_low_confidence(0.21) benign(0.006) TCGA-DK-A6AW-01 9 140995625 140995625 G T CACNA1B Intron 0.26 TCGA-DK-A6AW-01 9 14150186 14150186 G A NFIB Missense_Mutation p.S255L 0.46 tolerated(0.33) benign(0.255) TCGA-DK-A6AW-01 9 14313585 14313585 T G NFIB 5'UTR 0.59 TCGA-DK-A6AW-01 9 14618876 14618876 G T ZDHHC21 3'UTR 0.50 TCGA-DK-A6AW-01 9 14747026 14747026 C A FREM1 Missense_Mutation p.K2011N 0.64 tolerated(0.08) benign(0.111) TCGA-DK-A6AW-01 9 14750252 14750252 A G FREM1 Silent p.N1810N 0.40 TCGA-DK-A6AW-01 9 14801734 14801734 C A FREM1 Missense_Mutation p.D1204Y 0.48 tolerated(0.08) possibly_damaging(0.519) TCGA-DK-A6AW-01 9 14812838 14812838 G T FREM1 Silent p.I955I 0.48 TCGA-DK-A6AW-01 9 15469316 15469316 C T PSIP1 Missense_Mutation p.R351Q 0.39 tolerated(0.18) probably_damaging(0.992) TCGA-DK-A6AW-01 9 15506558 15506558 C T PSIP1 Splice_Site p.X50_splice 0.47 TCGA-DK-A6AW-01 9 16436191 16436191 G T BNC2 Silent p.V667V 0.44 TCGA-DK-A6AW-01 9 16436539 16436539 T G BNC2 Missense_Mutation p.Q551H 0.54 tolerated(0.23) probably_damaging(0.997) TCGA-DK-A6AW-01 9 16437199 16437199 G T BNC2 Silent p.V331V 0.47 TCGA-DK-A6AW-01 9 17226274 17226274 G T CNTLN Nonsense_Mutation p.E175* 0.39 TCGA-DK-A6AW-01 9 18680677 18680677 A G ADAMTSL1 Intron 0.62 TCGA-DK-A6AW-01 9 19371877 19371877 T G DENND4C Intron 0.46 TCGA-DK-A6AW-01 9 20770060 20770060 G A FOCAD Silent p.A243A 0.44 TCGA-DK-A6AW-01 9 27109613 27109613 C T TEK Missense_Mutation p.L9F 0.36 tolerated(0.19) unknown(0) TCGA-DK-A6AW-01 9 27206661 27206661 T G TEK Missense_Mutation p.Y816D 0.54 deleterious(0) probably_damaging(0.96) TCGA-DK-A6AW-01 9 27292291 27292291 C A EQTN Intron 0.60 TCGA-DK-A6AW-01 9 27561517 27561517 C A C9orf72 Intron 0.71 TCGA-DK-A6AW-01 9 27950439 27950439 G T LINGO2 Missense_Mutation p.F77L 0.40 tolerated(0.33) probably_damaging(0.996) TCGA-DK-A6AW-01 9 27950487 27950487 G T LINGO2 Silent p.I61I 0.45 TCGA-DK-A6AW-01 9 3247863 3247863 A C RFX3 Intron 0.45 TCGA-DK-A6AW-01 9 32634497 32634497 G A TAF1L Missense_Mutation p.R361C 0.41 deleterious(0.01) benign(0.013) TCGA-DK-A6AW-01 9 32784670 32784670 C T TMEM215 Silent p.D163D 0.51 TCGA-DK-A6AW-01 9 32984659 32984659 C T APTX Missense_Mutation p.R247Q 0.46 deleterious(0.03) possibly_damaging(0.908) TCGA-DK-A6AW-01 9 33917313 33917313 C T UBE2R2 3'UTR 0.41 TCGA-DK-A6AW-01 9 34107461 34107461 T C DCAF12 Missense_Mutation p.I146V 0.48 tolerated(0.25) benign(0.076) TCGA-DK-A6AW-01 9 34382763 34382763 G A C9orf24 Missense_Mutation p.R129W 0.41 tolerated(0.05) possibly_damaging(0.802) TCGA-DK-A6AW-01 9 34517424 34517424 A G DNAI1 Missense_Mutation p.I654V 0.48 tolerated(0.06) benign(0.004) TCGA-DK-A6AW-01 9 34614735 34614735 C T DCTN3 Missense_Mutation p.R128H 0.39 tolerated(0.13) benign(0.006) TCGA-DK-A6AW-01 9 34622457 34622457 T G ARID3C Missense_Mutation p.K312T 0.43 deleterious(0.02) possibly_damaging(0.821) TCGA-DK-A6AW-01 9 34661969 34661969 T A CCL27 Missense_Mutation p.N104I 0.38 deleterious(0) possibly_damaging(0.459) TCGA-DK-A6AW-01 9 35091479 35091479 C T PIGO Missense_Mutation p.R802Q 0.39 tolerated(0.43) benign(0.233) TCGA-DK-A6AW-01 9 35094351 35094351 G A PIGO Missense_Mutation p.R173C 0.42 deleterious(0) possibly_damaging(0.677) TCGA-DK-A6AW-01 9 35559236 35559236 G A RUSC2 Missense_Mutation p.E1119K 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-DK-A6AW-01 9 35720448 35720448 T C TLN1 Missense_Mutation p.D422G 0.48 deleterious(0) benign(0.217) TCGA-DK-A6AW-01 9 35810088 35810088 C A SPAG8 Intron 0.49 TCGA-DK-A6AW-01 9 35869592 35869592 G T OR13J1 Silent p.I269I 0.40 TCGA-DK-A6AW-01 9 36063861 36063861 G A RECK Missense_Mutation p.R114Q 0.40 tolerated(0.2) possibly_damaging(0.452) TCGA-DK-A6AW-01 9 36109988 36109988 C A RECK Silent p.V600V 0.41 TCGA-DK-A6AW-01 9 36236907 36236907 T G GNE Missense_Mutation p.K262Q 0.48 tolerated(0.2) benign(0.09) TCGA-DK-A6AW-01 9 36375992 36375992 G A RNF38 Nonsense_Mutation p.R99* 0.39 TCGA-DK-A6AW-01 9 37305547 37305547 C T ZCCHC7 Missense_Mutation p.R263C 0.44 deleterious(0.04) probably_damaging(0.98) TCGA-DK-A6AW-01 9 37442154 37442154 C T ZBTB5 Missense_Mutation p.R132H 0.06 tolerated(0.06) probably_damaging(0.962) TCGA-DK-A6AW-01 9 37487872 37487872 G T POLR1E Missense_Mutation p.D65Y 0.39 deleterious(0) probably_damaging(0.914) TCGA-DK-A6AW-01 9 37708411 37708411 G A FRMPD1 Missense_Mutation p.G92D 0.45 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 9 37745632 37745632 C T FRMPD1 Silent p.F1201F 0.42 TCGA-DK-A6AW-01 9 37854962 37854962 G T DCAF10 Missense_Mutation p.R346I 0.38 deleterious(0.01) possibly_damaging(0.497) TCGA-DK-A6AW-01 9 38411533 38411533 C T IGFBPL1 Missense_Mutation p.R234Q 0.43 tolerated(0.23) benign(0.188) TCGA-DK-A6AW-01 9 40774899 40774899 C T ZNF658 Missense_Mutation p.E126K 0.46 tolerated(0.28) benign(0.01) TCGA-DK-A6AW-01 9 43627793 43627793 C A SPATA31A6 Missense_Mutation p.Q298H 0.88 deleterious(0) possibly_damaging(0.889) TCGA-DK-A6AW-01 9 5126418 5126418 T G JAK2 Nonsense_Mutation p.L1088* 0.40 TCGA-DK-A6AW-01 9 5431904 5431904 C T PLGRKT Missense_Mutation p.R25Q 0.50 tolerated(0.47) benign(0.028) TCGA-DK-A6AW-01 9 5919702 5919702 A C KIAA2026 Silent p.P2098P 0.43 TCGA-DK-A6AW-01 9 6329005 6329005 G T TPD52L3 Missense_Mutation p.R137I 0.43 tolerated(0.06) benign(0.001) TCGA-DK-A6AW-01 9 6893228 6893228 A C KDM4C Missense_Mutation p.K306T 0.44 tolerated(1) benign(0.016) TCGA-DK-A6AW-01 9 70917948 70917948 C T FOXD4L3 Silent p.I27I 0.26 TCGA-DK-A6AW-01 9 71080029 71080029 T G PGM5 Missense_Mutation p.V355G 0.37 deleterious(0) possibly_damaging(0.906) TCGA-DK-A6AW-01 9 71395986 71395986 A C FAM122A 3'UTR 0.45 TCGA-DK-A6AW-01 9 72435771 72435771 A C C9orf135 5'UTR 0.32 TCGA-DK-A6AW-01 9 72723315 72723315 C A MAMDC2 Missense_Mutation p.R113S 0.38 tolerated(0.2) possibly_damaging(0.458) TCGA-DK-A6AW-01 9 72965054 72965054 C T SMC5 Nonsense_Mutation p.R972* 0.32 TCGA-DK-A6AW-01 9 73151080 73151080 T C TRPM3 Missense_Mutation p.Y1638C 0.44 tolerated_low_confidence(0.28) benign(0.004) TCGA-DK-A6AW-01 9 73151093 73151093 G A TRPM3 Missense_Mutation p.R1634C 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A6AW-01 9 73151971 73151971 G A TRPM3 Missense_Mutation p.S1341L 0.50 tolerated_low_confidence(0.31) benign(0.115) TCGA-DK-A6AW-01 9 73296482 73296482 G A TRPM3 Missense_Mutation p.R429W 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 9 74481635 74481635 T G ABHD17B Intron 0.38 TCGA-DK-A6AW-01 9 74489774 74489774 T G ABHD17B Missense_Mutation p.K75Q 0.42 deleterious(0.01) benign(0.056) TCGA-DK-A6AW-01 9 75775776 75775776 G T ANXA1 Nonsense_Mutation p.E148* 0.41 TCGA-DK-A6AW-01 9 75784023 75784023 G A ANXA1 Missense_Mutation p.A313T 0.46 tolerated(0.57) benign(0.018) TCGA-DK-A6AW-01 9 77397335 77397335 G A TRPM6 Missense_Mutation p.A1051V 0.15 deleterious(0) probably_damaging(0.989) TCGA-DK-A6AW-01 9 77614697 77614697 C A C9orf41 Missense_Mutation p.G227V 0.38 deleterious(0) probably_damaging(0.998) TCGA-DK-A6AW-01 9 77631215 77631215 C A C9orf41 Nonsense_Mutation p.E187* 0.38 TCGA-DK-A6AW-01 9 79117323 79117323 G T GCNT1 Missense_Mutation p.R9I 0.36 tolerated(0.3) benign(0.278) TCGA-DK-A6AW-01 9 79118371 79118371 C A GCNT1 Nonsense_Mutation p.Y358* 0.29 TCGA-DK-A6AW-01 9 79321122 79321122 G T PRUNE2 Missense_Mutation p.S2023Y 0.47 deleterious(0.04) possibly_damaging(0.569) TCGA-DK-A6AW-01 9 79321195 79321195 C T PRUNE2 Missense_Mutation p.E1999K 0.34 tolerated(0.07) benign(0.011) TCGA-DK-A6AW-01 9 79321292 79321292 G T PRUNE2 Silent p.V1966V 0.40 TCGA-DK-A6AW-01 9 79441611 79441611 C A PRUNE2 Missense_Mutation p.E182D 0.44 tolerated(0.37) benign(0.022) TCGA-DK-A6AW-01 9 79980377 79980377 T C VPS13A Missense_Mutation p.V2738A 0.49 tolerated(0.13) benign(0.007) TCGA-DK-A6AW-01 9 80262726 80262726 T C GNA14 5'UTR 0.55 TCGA-DK-A6AW-01 9 80912146 80912146 T G PSAT1 Missense_Mutation p.V7G 0.35 deleterious(0) possibly_damaging(0.776) TCGA-DK-A6AW-01 9 80943026 80943026 C T PSAT1 Missense_Mutation p.A310V 0.48 tolerated(0.28) benign(0.001) TCGA-DK-A6AW-01 9 84235392 84235392 C A TLE1 Missense_Mutation p.K225N 0.35 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A6AW-01 9 84533124 84533124 G T SPATA31D5P RNA 0.32 TCGA-DK-A6AW-01 9 8465489 8465489 C T PTPRD Missense_Mutation p.A1231T 0.40 deleterious(0) probably_damaging(0.993) TCGA-DK-A6AW-01 9 8485254 8485254 C A PTPRD Missense_Mutation p.E1042D 0.44 tolerated(0.83) benign(0.201) TCGA-DK-A6AW-01 9 8492897 8492897 C T PTPRD Missense_Mutation p.R811H 0.45 tolerated(0.08) probably_damaging(0.996) TCGA-DK-A6AW-01 9 8518089 8518089 A C PTPRD Missense_Mutation p.I434M 0.43 tolerated(1) probably_damaging(0.997) TCGA-DK-A6AW-01 9 85615482 85615482 G A RASEF Missense_Mutation p.P481S 0.21 tolerated(0.27) probably_damaging(0.991) TCGA-DK-A6AW-01 9 85925447 85925447 A C FRMD3 Missense_Mutation p.L264V 0.07 deleterious(0.01) benign(0.13) TCGA-DK-A6AW-01 9 86457248 86457248 C A KIF27 Missense_Mutation p.D1209Y 0.12 deleterious(0) probably_damaging(0.967) TCGA-DK-A6AW-01 9 86615973 86615973 G A RMI1 Silent p.P24P 0.47 TCGA-DK-A6AW-01 9 86616112 86616112 G A RMI1 Missense_Mutation p.D71N 0.46 tolerated(0.18) benign(0.006) TCGA-DK-A6AW-01 9 86616937 86616937 G A RMI1 Missense_Mutation p.D346N 0.43 tolerated(0.41) benign(0.003) TCGA-DK-A6AW-01 9 86895726 86895726 G A SLC28A3 Silent p.I573I 0.35 TCGA-DK-A6AW-01 9 88943266 88943266 T C ZCCHC6 Missense_Mutation p.K533E 0.48 tolerated(0.06) possibly_damaging(0.493) TCGA-DK-A6AW-01 9 90283584 90283584 C T DAPK1 Nonsense_Mutation p.R666* 0.44 TCGA-DK-A6AW-01 9 91692780 91692780 G A SHC3 Missense_Mutation p.A195V 0.44 tolerated(0.4) possibly_damaging(0.54) TCGA-DK-A6AW-01 9 93375838 93375838 C T DIRAS2 Missense_Mutation p.R91Q 0.40 tolerated(0.52) benign(0.015) TCGA-DK-A6AW-01 9 94984839 94984839 C T IARS Silent p.R1223R 0.47 TCGA-DK-A6AW-01 9 95050496 95050496 G T IARS Missense_Mutation p.T63K 0.54 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 9 95068066 95068066 C T NOL8 Missense_Mutation p.E958K 0.47 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 9 95078003 95078003 T C NOL8 Missense_Mutation p.T302A 0.22 deleterious(0.01) benign(0.002) TCGA-DK-A6AW-01 9 95099832 95099832 A C CENPP Missense_Mutation p.K100T 0.05 deleterious(0) benign(0.403) TCGA-DK-A6AW-01 9 96025940 96025940 G A WNK2 Missense_Mutation p.R1168Q 0.44 unknown(0) TCGA-DK-A6AW-01 9 96233609 96233609 G T FAM120A Nonsense_Mutation p.E221* 0.49 TCGA-DK-A6AW-01 9 96859815 96859815 C T PTPDC1 Missense_Mutation p.R321C 0.45 deleterious(0) probably_damaging(0.996) TCGA-DK-A6AW-01 9 97055284 97055284 C T ZNF169 Silent p.I63I 0.39 TCGA-DK-A6AW-01 9 97844983 97844983 G A C9orf3 Missense_Mutation p.E816K 0.08 tolerated(0.06) benign(0.411) TCGA-DK-A6AW-01 9 97879669 97879669 G A FANCC Missense_Mutation p.R334W 0.50 deleterious(0) possibly_damaging(0.713) TCGA-DK-A6AW-01 9 97912234 97912234 G T FANCC Missense_Mutation p.F219L 0.47 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A6AW-01 9 98211363 98211363 G A PTCH1 Silent p.F1264F 0.35 TCGA-DK-A6AW-01 9 990857 990857 T C DMRT3 Missense_Mutation p.V424A 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.857) TCGA-DK-A6AW-01 9 99798905 99798905 C A CTSV Missense_Mutation p.G174V 0.43 deleterious(0.02) probably_damaging(0.989) TCGA-DK-A6AW-01 X 100533060 100533060 G A TAF7L Missense_Mutation p.S271L 0.98 deleterious(0.01) possibly_damaging(0.895) TCGA-DK-A6AW-01 X 100808515 100808515 T C ARMCX1 Missense_Mutation p.I201T 0.92 deleterious(0.02) possibly_damaging(0.673) TCGA-DK-A6AW-01 X 101615430 101615430 G A NXF2B 3'UTR 0.44 TCGA-DK-A6AW-01 X 101971349 101971349 G A GPRASP2 Missense_Mutation p.E518K 0.94 tolerated(0.98) benign(0.036) TCGA-DK-A6AW-01 X 102317963 102317963 C A BEX1 Missense_Mutation p.E80D 0.89 tolerated(0.53) benign(0.155) TCGA-DK-A6AW-01 X 103499166 103499166 T G ESX1 Missense_Mutation p.N59H 0.93 deleterious_low_confidence(0.04) possibly_damaging(0.902) TCGA-DK-A6AW-01 X 106171927 106171927 A C CLDN2 Missense_Mutation p.K157Q 0.90 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 X 106456210 106456210 C T PIH1D3 Silent p.L35L 0.20 TCGA-DK-A6AW-01 X 106768874 106768874 C A FRMPD3 Silent p.L28L 0.92 TCGA-DK-A6AW-01 X 106871905 106871905 C A PRPS1 Missense_Mutation p.S16Y 0.98 deleterious(0) possibly_damaging(0.686) TCGA-DK-A6AW-01 X 107310214 107310214 G A VSIG1 Missense_Mutation p.D124N 0.85 tolerated(0.63) benign(0.107) TCGA-DK-A6AW-01 X 109416481 109416481 A C TMEM164 Missense_Mutation p.E232D 0.95 tolerated(0.08) possibly_damaging(0.857) TCGA-DK-A6AW-01 X 109697883 109697883 G A RGAG1 Silent p.Q1346Q 1.00 TCGA-DK-A6AW-01 X 110491101 110491101 T G CAPN6 Missense_Mutation p.E535A 0.98 tolerated(0.39) possibly_damaging(0.874) TCGA-DK-A6AW-01 X 11162006 11162006 G A ARHGAP6 Intron 0.05 TCGA-DK-A6AW-01 X 114419093 114419093 G T LRCH2 Missense_Mutation p.L168I 1.00 tolerated(0.07) probably_damaging(0.969) TCGA-DK-A6AW-01 X 115303666 115303666 G T AGTR2 Missense_Mutation p.D45Y 0.95 tolerated(0.08) benign(0.153) TCGA-DK-A6AW-01 X 115573945 115573945 C A SLC6A14 Missense_Mutation p.S146Y 0.96 deleterious(0.01) probably_damaging(1) TCGA-DK-A6AW-01 X 118221778 118221778 A T KIAA1210 Missense_Mutation p.F1139I 0.90 tolerated(0.2) possibly_damaging(0.57) TCGA-DK-A6AW-01 X 118893527 118893527 G A SOWAHD Silent p.A299A 0.95 TCGA-DK-A6AW-01 X 119387779 119387779 C A ZBTB33 Missense_Mutation p.S170Y 0.84 deleterious(0) probably_damaging(0.935) TCGA-DK-A6AW-01 X 119565102 119565102 A C LAMP2 Intron 0.96 TCGA-DK-A6AW-01 X 120182954 120182954 G T GLUD2 Missense_Mutation p.E472D 0.92 tolerated(0.08) benign(0.003) TCGA-DK-A6AW-01 X 123195142 123195142 G A STAG2 Nonsense_Mutation p.W495* 0.98 TCGA-DK-A6AW-01 X 123516582 123516582 A C TENM1 Missense_Mutation p.L2460V 0.91 tolerated(0.83) benign(0) TCGA-DK-A6AW-01 X 123554354 123554354 G A TENM1 Missense_Mutation p.R1597C 0.93 deleterious(0) possibly_damaging(0.786) TCGA-DK-A6AW-01 X 123785874 123785874 G A TENM1 Missense_Mutation p.S490L 0.91 tolerated(0.12) benign(0.007) TCGA-DK-A6AW-01 X 12516860 12516860 C T FRMPD4 Missense_Mutation p.P35S 0.97 tolerated(0.06) possibly_damaging(0.616) TCGA-DK-A6AW-01 X 128649669 128649669 C A SMARCA1 Nonsense_Mutation p.E209* 0.88 TCGA-DK-A6AW-01 X 128926408 128926408 G A SASH3 Missense_Mutation p.D183N 0.95 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 X 12904545 12904545 C T TLR7 Silent p.P306P 0.92 TCGA-DK-A6AW-01 X 12938895 12938895 T G TLR8 Missense_Mutation p.F579C 0.97 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 X 129518433 129518433 C A GPR119 Missense_Mutation p.S330I 0.96 deleterious_low_confidence(0.01) benign(0.006) TCGA-DK-A6AW-01 X 130678548 130678548 C A OR13H1 Missense_Mutation p.F167L 0.95 tolerated(0.41) possibly_damaging(0.861) TCGA-DK-A6AW-01 X 131525017 131525017 T A MBNL3 Missense_Mutation p.D210V 0.99 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 X 13338041 13338041 A C ATXN3L Missense_Mutation p.F5V 0.82 deleterious(0.04) benign(0.238) TCGA-DK-A6AW-01 X 133559375 133559375 T G PHF6 3'UTR 0.95 TCGA-DK-A6AW-01 X 133634230 133634230 A C HPRT1 3'UTR 1.00 TCGA-DK-A6AW-01 X 134166537 134166537 G A FAM127A Missense_Mutation p.E42K 0.91 deleterious(0.02) possibly_damaging(0.709) TCGA-DK-A6AW-01 X 134428063 134428063 C T ZNF75D Missense_Mutation p.A2T 0.91 deleterious(0.05) benign(0) TCGA-DK-A6AW-01 X 134679384 134679384 G A DDX26B Missense_Mutation p.E76K 0.94 deleterious(0) possibly_damaging(0.824) TCGA-DK-A6AW-01 X 134680741 134680741 G A DDX26B Missense_Mutation p.E182K 0.88 deleterious(0.04) probably_damaging(0.983) TCGA-DK-A6AW-01 X 134987506 134987506 C A SAGE1 Missense_Mutation p.H137N 0.92 tolerated(1) benign(0.026) TCGA-DK-A6AW-01 X 135482093 135482093 C T GPR112 Missense_Mutation p.S2798F 0.06 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 X 13765053 13765053 G T OFD1 Missense_Mutation p.R270I 0.92 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 X 13773333 13773333 A C OFD1 Missense_Mutation p.Q398P 0.73 deleterious(0.01) possibly_damaging(0.527) TCGA-DK-A6AW-01 X 138714552 138714552 C T MCF2 Missense_Mutation p.R98Q 0.98 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 X 138727777 138727777 G A MCF2 Nonsense_Mutation p.R61* 0.89 TCGA-DK-A6AW-01 X 138729008 138729008 A C MCF2 Missense_Mutation p.F27C 1.00 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 X 140994260 140994260 C A MAGEC1 Missense_Mutation p.S357Y 0.94 tolerated_low_confidence(0.09) possibly_damaging(0.608) TCGA-DK-A6AW-01 X 142113830 142113830 G T SPANXN4 Missense_Mutation p.E10D 0.92 tolerated_low_confidence(0.11) benign(0.01) TCGA-DK-A6AW-01 X 142596845 142596845 C A SPANXN3 Missense_Mutation p.E75D 0.85 tolerated(0.09) benign(0.199) TCGA-DK-A6AW-01 X 142716760 142716760 C A SLITRK4 Missense_Mutation p.R722I 0.94 tolerated(0.15) probably_damaging(0.991) TCGA-DK-A6AW-01 X 1460658 1460658 G A IL3RA 5'UTR 0.43 TCGA-DK-A6AW-01 X 1464228 1464228 G A IL3RA Silent p.T28T 0.33 TCGA-DK-A6AW-01 X 148044244 148044244 G T AFF2 Splice_Site p.X897_splice 0.73 TCGA-DK-A6AW-01 X 14937848 14937848 A T MOSPD2 Missense_Mutation p.I492F 0.94 tolerated(0.06) benign(0.005) TCGA-DK-A6AW-01 X 149809878 149809878 G A MTM1 Missense_Mutation p.R222Q 0.96 deleterious(0.03) probably_damaging(0.998) TCGA-DK-A6AW-01 X 150345144 150345144 G A GPR50 5'UTR 0.98 TCGA-DK-A6AW-01 X 1508590 1508590 C T SLC25A6 Missense_Mutation p.D48N 0.47 tolerated(0.07) benign(0.048) TCGA-DK-A6AW-01 X 150912344 150912344 G T CNGA2 Missense_Mutation p.D457Y 0.95 deleterious(0) probably_damaging(0.969) TCGA-DK-A6AW-01 X 151124309 151124309 A G GABRE Missense_Mutation p.F270L 0.96 deleterious(0.02) probably_damaging(0.973) TCGA-DK-A6AW-01 X 151366205 151366205 G T GABRA3 Nonsense_Mutation p.Y277* 0.92 TCGA-DK-A6AW-01 X 151996404 151996404 T G CETN2 Missense_Mutation p.K167T 0.90 tolerated(0.15) benign(0.255) TCGA-DK-A6AW-01 X 15339558 15339558 G T PIGA 3'UTR 0.94 TCGA-DK-A6AW-01 X 15364152 15364152 A G FIGF 3'UTR 0.97 TCGA-DK-A6AW-01 X 154292338 154292338 C A MTCP1 3'UTR 0.94 TCGA-DK-A6AW-01 X 154508587 154508587 G A CLIC2 Missense_Mutation p.R145C 0.88 deleterious(0.01) possibly_damaging(0.482) TCGA-DK-A6AW-01 X 155169448 155169448 C T VAMP7 Missense_Mutation p.R173C 0.49 deleterious(0.04) possibly_damaging(0.835) TCGA-DK-A6AW-01 X 1712415 1712415 C T AKAP17A Silent p.Y20Y 0.54 TCGA-DK-A6AW-01 X 17744064 17744064 C T NHS Missense_Mutation p.A592V 0.90 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A6AW-01 X 17750028 17750028 G A NHS Missense_Mutation p.R1446Q 0.95 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6AW-01 X 18234661 18234661 C T BEND2 Missense_Mutation p.R73H 0.84 tolerated(0.61) benign(0) TCGA-DK-A6AW-01 X 18234766 18234766 G A BEND2 Missense_Mutation p.S38F 0.86 deleterious_low_confidence(0.01) benign(0.188) TCGA-DK-A6AW-01 X 18797202 18797202 G T PPEF1 Missense_Mutation p.E211D 1.00 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 X 18959733 18959733 G T PHKA2 Missense_Mutation p.L260I 0.89 deleterious(0.02) probably_damaging(0.98) TCGA-DK-A6AW-01 X 20252921 20252921 T G RPS6KA3 Missense_Mutation p.Q27H 0.97 tolerated_low_confidence(0.12) benign(0.001) TCGA-DK-A6AW-01 X 21450809 21450809 T C CNKSR2 Missense_Mutation p.I103T 0.88 tolerated(0.18) benign(0.145) TCGA-DK-A6AW-01 X 21896614 21896614 G T MBTPS2 Splice_Site p.X356_splice 0.93 TCGA-DK-A6AW-01 X 2343324 2343324 C T DHRSX Missense_Mutation p.R44H 0.41 deleterious(0) probably_damaging(0.94) TCGA-DK-A6AW-01 X 2408700 2408700 C T ZBED1 Missense_Mutation p.A21T 0.41 tolerated(0.08) probably_damaging(0.998) TCGA-DK-A6AW-01 X 24760146 24760146 G A POLA1 Missense_Mutation p.E786K 0.93 deleterious(0) probably_damaging(0.987) TCGA-DK-A6AW-01 X 2609847 2609847 T G CD99 Intron 0.40 TCGA-DK-A6AW-01 X 2799128 2799128 C T GYG2 Silent p.I460I 0.84 TCGA-DK-A6AW-01 X 27997802 27997802 G T DCAF8L1 Missense_Mutation p.F550L 0.34 tolerated(0.11) benign(0.013) TCGA-DK-A6AW-01 X 29972677 29972677 G T IL1RAPL1 Missense_Mutation p.V414L 0.97 deleterious(0.03) possibly_damaging(0.86) TCGA-DK-A6AW-01 X 31838188 31838188 C A DMD Missense_Mutation p.D2405Y 0.87 benign(0.066) TCGA-DK-A6AW-01 X 32583871 32583871 A G DMD Missense_Mutation p.F647S 0.84 possibly_damaging(0.838) TCGA-DK-A6AW-01 X 3261699 3261699 C A MXRA5 Missense_Mutation p.R59I 0.95 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 X 32663160 32663160 G T DMD Missense_Mutation p.S357Y 0.90 probably_damaging(0.948) TCGA-DK-A6AW-01 X 35988963 35988963 G T CXorf22 Missense_Mutation p.K631N 1.00 tolerated(0.09) benign(0.019) TCGA-DK-A6AW-01 X 37026774 37026774 G T FAM47C Silent p.L97L 0.89 TCGA-DK-A6AW-01 X 37699791 37699791 C A DYNLT3 3'UTR 0.89 TCGA-DK-A6AW-01 X 37935923 37935923 C T SYTL5 Missense_Mutation p.R220W 0.90 deleterious(0.04) benign(0) TCGA-DK-A6AW-01 X 39931909 39931909 G A BCOR Missense_Mutation p.S897L 0.93 tolerated(0.14) benign(0.043) TCGA-DK-A6AW-01 X 46510553 46510553 C T SLC9A7 Missense_Mutation p.G447R 0.84 tolerated(0.05) benign(0.189) TCGA-DK-A6AW-01 X 47044502 47044502 G T RBM10 Nonsense_Mutation p.E667* 0.97 TCGA-DK-A6AW-01 X 48418556 48418556 C T TBC1D25 Silent p.F420F 0.78 TCGA-DK-A6AW-01 X 50111913 50111913 T C DGKK RNA 0.83 TCGA-DK-A6AW-01 X 51150190 51150190 G A CXorf67 Missense_Mutation p.E108K 0.59 tolerated(0.72) benign(0.026) TCGA-DK-A6AW-01 X 51150821 51150821 C T CXorf67 Missense_Mutation p.A318V 0.88 tolerated(0.12) benign(0.085) TCGA-DK-A6AW-01 X 51488447 51488447 C T GSPT2 Silent p.F575F 0.97 TCGA-DK-A6AW-01 X 51644766 51644766 C T MAGED1 Missense_Mutation p.R749C 0.83 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DK-A6AW-01 X 53630453 53630453 G A HUWE1 Missense_Mutation p.R918C 0.94 probably_damaging(0.996) TCGA-DK-A6AW-01 X 54841145 54841145 C A MAGED2 Missense_Mutation p.F441L 0.85 tolerated(0.08) possibly_damaging(0.835) TCGA-DK-A6AW-01 X 55479292 55479292 T G MAGEH1 Missense_Mutation p.F162C 0.94 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-A6AW-01 X 57934499 57934499 C A ZXDA Nonsense_Mutation p.E786* 0.84 TCGA-DK-A6AW-01 X 591741 591741 G A SHOX Missense_Mutation p.E37K 0.43 deleterious_low_confidence(0.02) benign(0.214) TCGA-DK-A6AW-01 X 64139062 64139062 C A ZC4H2 Nonsense_Mutation p.E141* 0.97 TCGA-DK-A6AW-01 X 64957101 64957101 C T MSN Silent p.S384S 1.00 TCGA-DK-A6AW-01 X 65392426 65392426 G A HEPH Missense_Mutation p.E187K 0.92 tolerated(0.48) benign(0.044) TCGA-DK-A6AW-01 X 66765708 66765708 T C AR Silent p.C240C 0.97 TCGA-DK-A6AW-01 X 69176894 69176894 C A EDA Missense_Mutation p.F138L 0.94 tolerated_low_confidence(0.11) unknown(0) TCGA-DK-A6AW-01 X 69419713 69419713 G A DGAT2L6 Missense_Mutation p.R83Q 0.81 tolerated(0.2) benign(0.002) TCGA-DK-A6AW-01 X 70053443 70053443 C T TEX11 Missense_Mutation p.A191T 0.94 deleterious(0) probably_damaging(0.997) TCGA-DK-A6AW-01 X 70349952 70349952 T C MED12 Missense_Mutation p.L1312S 0.83 probably_damaging(0.986) TCGA-DK-A6AW-01 X 70836318 70836318 C T CXCR3 Missense_Mutation p.R382H 0.95 tolerated(0.11) benign(0.013) TCGA-DK-A6AW-01 X 71802425 71802425 G T PHKA1 Missense_Mutation p.F1107L 0.88 deleterious(0) probably_damaging(0.999) TCGA-DK-A6AW-01 X 73042889 73042889 C A XIST RNA 0.81 TCGA-DK-A6AW-01 X 73064005 73064005 A G XIST RNA 0.95 TCGA-DK-A6AW-01 X 73744583 73744583 G A SLC16A2 Missense_Mutation p.R322H 0.98 deleterious(0.02) probably_damaging(0.986) TCGA-DK-A6AW-01 X 76875969 76875969 A G ATRX Silent p.H1722H 0.89 TCGA-DK-A6AW-01 X 76937179 76937179 C T ATRX Missense_Mutation p.R1190K 0.89 benign(0.003) TCGA-DK-A6AW-01 X 78011465 78011465 G T LPAR4 Nonsense_Mutation p.E367* 0.12 TCGA-DK-A6AW-01 X 79277857 79277857 C T TBX22 Missense_Mutation p.A30V 0.85 tolerated(0.16) benign(0.069) TCGA-DK-A6AW-01 X 83126562 83126562 C T CYLC1 Missense_Mutation p.S54L 0.77 tolerated(1) benign(0.014) TCGA-DK-A6AW-01 X 83724352 83724352 C T HDX Missense_Mutation p.D127N 0.90 tolerated(1) benign(0.001) TCGA-DK-A6AW-01 X 84310862 84310862 C T APOOL Nonsense_Mutation p.R109* 0.87 TCGA-DK-A6AW-01 X 84561208 84561208 C A POF1B Missense_Mutation p.E432D 0.82 deleterious(0.03) probably_damaging(0.995) TCGA-DK-A6AW-01 X 8553380 8553380 G A KAL1 Nonsense_Mutation p.R262* 1.00 TCGA-DK-A6AW-01 X 88008543 88008543 A C CPXCR1 Missense_Mutation p.Q43P 0.92 deleterious(0) possibly_damaging(0.702) TCGA-DK-A6AW-01 X 89177538 89177538 G A TGIF2LX Missense_Mutation p.D152N 0.96 tolerated(0.2) benign(0.035) TCGA-DK-A6AW-01 X 91090433 91090433 T C PCDH11X 5'UTR 0.89 TCGA-DK-A6AW-01 X 99662548 99662548 A G PCDH19 Missense_Mutation p.S350P 0.85 deleterious(0.01) benign(0.109) TCGA-DK-A6AW-01 Y 21867927 21867927 A C KDM5D Nonsense_Mutation p.L1525* 0.95 TCGA-DK-A6AW-01 Y 2655003 2655003 C A SRY 3'UTR 0.95 TCGA-DK-A6AW-01 Y 2829685 2829685 C T ZFY Missense_Mutation p.S211L 0.85 deleterious(0) possibly_damaging(0.842) TCGA-DK-A6AW-01 Y 4925109 4925109 C T PCDH11Y Missense_Mutation p.S82L 0.92 deleterious(0.02) possibly_damaging(0.491) TCGA-DK-A6AW-01 Y 4925351 4925351 G T PCDH11Y Missense_Mutation p.D163Y 0.79 deleterious(0) probably_damaging(1) TCGA-DK-A6AW-01 Y 6736207 6736207 T C AMELY Silent p.Q148Q 0.92 TCGA-DK-A6B0-01 10 101147691 101147691 C T CNNM1 Missense_Mutation p.R819W 0.40 deleterious(0.04) benign(0.045) TCGA-DK-A6B0-01 10 79590555 79590555 T A DLG5 Missense_Mutation p.I609F 0.48 deleterious(0) probably_damaging(0.993) TCGA-DK-A6B0-01 10 96336437 96336437 C T HELLS Missense_Mutation p.H303Y 0.44 deleterious(0) possibly_damaging(0.889) TCGA-DK-A6B0-01 12 133378551 133378551 G A GOLGA3 Silent p.H534H 0.10 TCGA-DK-A6B0-01 13 73636148 73636149 - CAT KLF5 In_Frame_Ins p.N137_V138insH 0.39 TCGA-DK-A6B0-01 15 81593759 81593759 T G IL16 Missense_Mutation p.L1075R 0.51 tolerated(0.08) benign(0.017) TCGA-DK-A6B0-01 16 3778456 3778468 GCAGCTGCCTCCG - CREBBP Frame_Shift_Del p.R2194Cfs*104 0.30 TCGA-DK-A6B0-01 16 58621251 58621252 - T CNOT1 Frame_Shift_Ins p.E126Rfs*17 0.25 TCGA-DK-A6B0-01 18 33552668 33552668 G A C18orf21 5'UTR 0.47 TCGA-DK-A6B0-01 19 10100006 10100006 C T COL5A3 Missense_Mutation p.G695R 0.41 unknown(0) TCGA-DK-A6B0-01 19 30936563 30936563 C T ZNF536 Silent p.S698S 0.37 TCGA-DK-A6B0-01 19 50752244 50752244 G T MYH14 Missense_Mutation p.A444S 0.50 deleterious(0) probably_damaging(0.987) TCGA-DK-A6B0-01 19 9072518 9072518 G A MUC16 Silent p.T4976T 0.36 TCGA-DK-A6B0-01 1 11097856 11097856 G A MASP2 Missense_Mutation p.P301L 0.43 deleterious(0.02) possibly_damaging(0.678) TCGA-DK-A6B0-01 1 243809335 243809335 C T AKT3 Missense_Mutation p.E97K 0.38 tolerated(0.12) possibly_damaging(0.9) TCGA-DK-A6B0-01 20 30388902 30388902 G A TPX2 3'UTR 0.44 TCGA-DK-A6B0-01 20 61981310 61981310 G A CHRNA4 Missense_Mutation p.R485W 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A6B0-01 21 46951845 46951845 T C SLC19A1 Missense_Mutation p.Y136C 0.69 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B0-01 2 187498081 187498081 C G ITGAV Missense_Mutation p.P204R 0.41 deleterious(0) possibly_damaging(0.635) TCGA-DK-A6B0-01 2 20237339 20237339 A C LAPTM4A Missense_Mutation p.M90R 0.48 deleterious(0) possibly_damaging(0.486) TCGA-DK-A6B0-01 2 238244973 238244973 C T COL6A3 Missense_Mutation p.A2924T 0.44 unknown(0) TCGA-DK-A6B0-01 2 61575410 61575410 T C USP34 Missense_Mutation p.D627G 0.49 deleterious_low_confidence(0.04) benign(0.014) TCGA-DK-A6B0-01 4 174253206 174253206 A G HMGB2 3'UTR 0.46 TCGA-DK-A6B0-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.91 deleterious(0) possibly_damaging(0.882) TCGA-DK-A6B0-01 4 188924123 188924123 G A ZFP42 Silent p.V54V 0.40 TCGA-DK-A6B0-01 5 31515169 31515169 C G DROSHA Missense_Mutation p.E406Q 0.44 tolerated(0.14) benign(0.419) TCGA-DK-A6B0-01 6 28403888 28403888 C T ZSCAN23 Silent p.R52R 0.41 TCGA-DK-A6B0-01 7 93551507 93551507 G T GNG11 Nonsense_Mutation p.E20* 0.67 TCGA-DK-A6B0-01 9 135961693 135961693 C T CELP RNA 0.54 TCGA-DK-A6B0-01 9 19358123 19358123 A G DENND4C Missense_Mutation p.T1660A 0.44 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B0-01 9 20363514 20363514 T C MLLT3 Missense_Mutation p.M431V 0.42 tolerated(0.37) benign(0.001) TCGA-DK-A6B0-01 X 103349042 103349042 G A SLC25A53 Missense_Mutation p.S300F 0.10 deleterious_low_confidence(0.02) benign(0.002) TCGA-DK-A6B0-01 X 44921967 44921967 C A KDM6A Missense_Mutation p.Q501K 0.86 deleterious(0) possibly_damaging(0.9) TCGA-DK-A6B1-01 10 128193313 128193313 G A C10orf90 Silent p.R152R 0.33 TCGA-DK-A6B1-01 10 46028655 46028655 C T MARCH8 Missense_Mutation p.S2N 0.15 tolerated_low_confidence(0.59) benign(0.002) TCGA-DK-A6B1-01 10 50724323 50724323 G A ERCC6-PGBD3 Missense_Mutation p.H748Y 0.38 tolerated_low_confidence(1) unknown(0) TCGA-DK-A6B1-01 10 51580916 51580916 G A NCOA4 Missense_Mutation p.E123K 0.89 deleterious(0) probably_damaging(0.974) TCGA-DK-A6B1-01 10 64136649 64136649 A T ZNF365 Missense_Mutation p.R233W 0.81 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DK-A6B1-01 10 75541896 75541896 G A CHCHD1 Silent p.L21L 0.51 TCGA-DK-A6B1-01 10 97918151 97918151 C T ZNF518A RNA 0.38 TCGA-DK-A6B1-01 11 103870975 103870975 G A PDGFD Missense_Mutation p.H45Y 0.29 deleterious(0.01) possibly_damaging(0.528) TCGA-DK-A6B1-01 11 1101652 1101652 C T MUC2 Silent p.F2555F 0.30 TCGA-DK-A6B1-01 11 22283797 22283797 T G ANO5 Missense_Mutation p.Y585D 0.14 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B1-01 11 3849400 3849401 - CTCCT RHOG 5'UTR 0.33 TCGA-DK-A6B1-01 11 57243854 57243854 G A RTN4RL2 Missense_Mutation p.E245K 0.22 deleterious(0) possibly_damaging(0.505) TCGA-DK-A6B1-01 11 60161362 60161362 A G MS4A7 3'UTR 0.57 TCGA-DK-A6B1-01 11 64129169 64129169 C T RPS6KA4 Missense_Mutation p.S236L 0.55 tolerated(0.18) probably_damaging(0.996) TCGA-DK-A6B1-01 11 65046299 65046299 G A POLA2 Missense_Mutation p.G187E 0.29 deleterious(0.04) benign(0.217) TCGA-DK-A6B1-01 12 112081898 112081898 C T BRAP 3'UTR 0.48 TCGA-DK-A6B1-01 12 11214588 11214588 G A TAS2R46 Silent p.L102L 0.53 TCGA-DK-A6B1-01 12 113707634 113707634 C G TPCN1 Missense_Mutation p.I316M 0.38 deleterious(0.03) possibly_damaging(0.583) TCGA-DK-A6B1-01 12 130934768 130934768 G A RIMBP2 Silent p.V169V 0.23 TCGA-DK-A6B1-01 12 14794015 14794015 C G GUCY2C Splice_Site p.X690_splice 0.24 TCGA-DK-A6B1-01 12 38710615 38710615 C G ALG10B 5'UTR 0.34 TCGA-DK-A6B1-01 12 40757337 40757337 G A LRRK2 Missense_Mutation p.D2388N 0.22 tolerated(0.08) benign(0.065) TCGA-DK-A6B1-01 12 49951242 49951242 C T KCNH3 Missense_Mutation p.R920W 0.13 tolerated(0.06) possibly_damaging(0.859) TCGA-DK-A6B1-01 12 53646949 53646949 C T MFSD5 Silent p.L217L 0.29 TCGA-DK-A6B1-01 12 53875051 53875051 G C MAP3K12 Missense_Mutation p.S865C 0.16 tolerated_low_confidence(0.28) benign(0.033) TCGA-DK-A6B1-01 12 56478852 56478852 G A ERBB3 Missense_Mutation p.R103H 0.08 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 12 56492632 56492632 G A ERBB3 Missense_Mutation p.E928K 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B1-01 12 57039721 57039721 G T ATP5B Silent p.A9A 0.33 TCGA-DK-A6B1-01 12 7639260 7639260 C T CD163 Missense_Mutation p.A765T 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 13 96443331 96443334 AAAG - DNAJC3 3'UTR 0.14 TCGA-DK-A6B1-01 13 96637534 96637534 C G UGGT2 Intron 0.23 TCGA-DK-A6B1-01 14 100803431 100803431 C T WARS Missense_Mutation p.E408K 0.28 deleterious(0) benign(0.429) TCGA-DK-A6B1-01 14 22636742 22636742 C T TRAV30 Silent p.F65F 0.38 TCGA-DK-A6B1-01 14 33290975 33290975 T C AKAP6 Missense_Mutation p.V1319A 0.08 tolerated(0.18) benign(0.005) TCGA-DK-A6B1-01 14 52520521 52520522 TC - NID2 Frame_Shift_Del p.D402Ffs*39 0.30 TCGA-DK-A6B1-01 14 65007942 65007942 C T HSPA2 Silent p.L125L 0.32 TCGA-DK-A6B1-01 14 65210004 65210004 G T PLEKHG3 Silent p.S1025S 0.39 TCGA-DK-A6B1-01 14 79117545 79117545 G A NRXN3 5'UTR 0.61 TCGA-DK-A6B1-01 15 100214790 100214790 C T MEF2A Nonsense_Mutation p.Q197* 0.21 TCGA-DK-A6B1-01 15 23003104 23003104 G A CYFIP1 3'UTR 0.20 TCGA-DK-A6B1-01 15 27271920 27271920 C T GABRG3 Silent p.D74D 0.12 TCGA-DK-A6B1-01 15 45060009 45060009 G A TRIM69 3'UTR 0.39 TCGA-DK-A6B1-01 15 52656895 52656895 A G MYO5A Silent p.T1055T 0.44 TCGA-DK-A6B1-01 15 55790469 55790469 G A DYX1C1 Missense_Mutation p.S20F 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-DK-A6B1-01 15 67073705 67073705 C T SMAD6 Silent p.F441F 0.46 TCGA-DK-A6B1-01 15 83481871 83481871 G A WHAMM Missense_Mutation p.G209E 0.32 tolerated(0.88) benign(0.001) TCGA-DK-A6B1-01 15 90022685 90022685 G C RHCG Missense_Mutation p.F235L 0.46 deleterious(0.01) probably_damaging(0.955) TCGA-DK-A6B1-01 15 91021105 91021105 C T IQGAP1 Nonsense_Mutation p.Q1105* 0.41 TCGA-DK-A6B1-01 16 15155703 15155703 G A RRN3 Silent p.T618T 0.24 TCGA-DK-A6B1-01 16 15818464 15818464 G A NDE1 3'UTR 0.35 TCGA-DK-A6B1-01 16 19746716 19746716 C A IQCK Missense_Mutation p.L140M 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-DK-A6B1-01 16 24808846 24808846 G A TNRC6A Silent p.A1199A 0.26 TCGA-DK-A6B1-01 16 57796128 57796128 C T KIFC3 Missense_Mutation p.E558K 0.23 deleterious(0) possibly_damaging(0.86) TCGA-DK-A6B1-01 16 66861918 66861918 C T NAE1 Intron 0.39 TCGA-DK-A6B1-01 16 68395554 68395554 G A SMPD3 Silent p.I606I 0.25 TCGA-DK-A6B1-01 16 9984931 9984931 C - GRIN2A Frame_Shift_Del p.G345Afs*19 0.47 TCGA-DK-A6B1-01 17 10204191 10204191 T G MYH13 3'UTR 0.19 TCGA-DK-A6B1-01 17 26874858 26874858 G A UNC119 Silent p.F149F 0.37 TCGA-DK-A6B1-01 17 33749394 33749394 A C SLFN12 Missense_Mutation p.I218M 0.20 deleterious(0) probably_damaging(0.977) TCGA-DK-A6B1-01 17 37188442 37188442 G C LRRC37A11P RNA 0.27 TCGA-DK-A6B1-01 17 37830243 37830243 C T PGAP3 Intron 0.35 TCGA-DK-A6B1-01 17 3920921 3920921 T A ZZEF1 Missense_Mutation p.Q2582L 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B1-01 17 42937369 42937369 G C EFTUD2 Missense_Mutation p.I588M 0.29 tolerated(0.28) benign(0.04) TCGA-DK-A6B1-01 17 42937886 42937886 G A EFTUD2 Missense_Mutation p.P545S 0.30 tolerated(0.1) benign(0.262) TCGA-DK-A6B1-01 17 64024480 64024480 A C CEP112 Nonsense_Mutation p.L516* 0.57 TCGA-DK-A6B1-01 17 66038302 66038302 C A KPNA2 Missense_Mutation p.P135H 0.14 tolerated(0.2) benign(0.378) TCGA-DK-A6B1-01 17 7365908 7365908 G C ZBTB4 Missense_Mutation p.P798R 0.15 benign(0.261) TCGA-DK-A6B1-01 17 80059413 80059413 C T FASN 5'Flank 0.23 TCGA-DK-A6B1-01 18 13087586 13087587 AG - CEP192 Frame_Shift_Del p.E1979Tfs*11 0.20 TCGA-DK-A6B1-01 18 29648359 29648359 C T RNF125 3'UTR 0.69 TCGA-DK-A6B1-01 18 3582034 3582034 C T DLGAP1 Missense_Mutation p.A602T 0.33 tolerated(0.15) probably_damaging(0.998) TCGA-DK-A6B1-01 18 3582077 3582077 G T DLGAP1 Missense_Mutation p.S587R 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-DK-A6B1-01 18 47017211 47017212 CT - RPL17 Frame_Shift_Del p.Q56Lfs*33 0.14 TCGA-DK-A6B1-01 18 60986004 60986004 G T BCL2 5'UTR 0.25 TCGA-DK-A6B1-01 19 11728072 11728072 G C ZNF627 Missense_Mutation p.E252Q 0.19 tolerated(0.14) possibly_damaging(0.602) TCGA-DK-A6B1-01 19 11728286 11728286 G T ZNF627 Missense_Mutation p.R323I 0.17 deleterious(0) probably_damaging(0.947) TCGA-DK-A6B1-01 19 17434292 17434292 T C ANO8 3'UTR 0.46 TCGA-DK-A6B1-01 19 18327678 18327678 T A PDE4C Missense_Mutation p.D453V 0.22 deleterious(0) probably_damaging(0.968) TCGA-DK-A6B1-01 19 23545443 23545443 T C ZNF91 Missense_Mutation p.E113G 0.19 tolerated(0.34) benign(0.001) TCGA-DK-A6B1-01 19 367166 367166 A G THEG Missense_Mutation p.L271S 0.11 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B1-01 19 36967497 36967497 C T ZNF566 5'UTR 0.11 TCGA-DK-A6B1-01 19 37129879 37129879 G C ZNF461 Silent p.L456L 0.34 TCGA-DK-A6B1-01 19 40095307 40095307 C G LGALS13 Missense_Mutation p.I27M 0.26 tolerated(0.11) possibly_damaging(0.738) TCGA-DK-A6B1-01 19 51875546 51875546 G A NKG7 Missense_Mutation p.T58M 0.16 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B1-01 19 57911159 57911159 G A ZNF548 Missense_Mutation p.E514K 0.19 tolerated(0.1) benign(0.23) TCGA-DK-A6B1-01 19 57999139 57999139 G A ZNF419 5'UTR 0.43 TCGA-DK-A6B1-01 19 58578626 58578626 C A ZNF135 Silent p.T282T 0.19 TCGA-DK-A6B1-01 19 59059228 59059228 G A TRIM28 Missense_Mutation p.M303I 0.51 tolerated(0.13) probably_damaging(0.916) TCGA-DK-A6B1-01 1 111216889 111216889 G A KCNA3 Silent p.S181S 0.19 TCGA-DK-A6B1-01 1 145075751 145075751 G A PDE4DIP Nonsense_Mutation p.R38* 0.05 TCGA-DK-A6B1-01 1 155154441 155154441 G A TRIM46 Missense_Mutation p.D568N 0.69 deleterious(0) benign(0.274) TCGA-DK-A6B1-01 1 156902419 156902419 C G LRRC71 Intron 0.04 TCGA-DK-A6B1-01 1 167802338 167802338 G A ADCY10 Silent p.L1160L 0.04 TCGA-DK-A6B1-01 1 190423875 190423875 G C BRINP3 Missense_Mutation p.S49C 0.33 deleterious(0) benign(0.282) TCGA-DK-A6B1-01 1 202568473 202568473 T C SYT2 Missense_Mutation p.Y309C 0.26 deleterious(0) benign(0.283) TCGA-DK-A6B1-01 1 205495908 205495908 T C CDK18 Silent p.S254S 0.05 TCGA-DK-A6B1-01 1 211533413 211533413 C A TRAF5 Missense_Mutation p.L180I 0.50 tolerated(0.07) benign(0.125) TCGA-DK-A6B1-01 1 216243500 216243500 G A USH2A Missense_Mutation p.R1998C 0.33 benign(0.003) TCGA-DK-A6B1-01 1 223971891 223971891 C G TP53BP2 Missense_Mutation p.D1097H 0.16 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B1-01 1 224008929 224008929 A G TP53BP2 Silent p.C56C 0.07 TCGA-DK-A6B1-01 1 227920503 227920503 C T SNAP47 5'Flank 0.20 TCGA-DK-A6B1-01 1 228473993 228473993 G A OBSCN Silent p.S3502S 0.17 TCGA-DK-A6B1-01 1 53072441 53072441 G A GPX7 Missense_Mutation p.G75D 0.11 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 1 62545169 62545169 C T INADL Silent p.F1391F 0.55 TCGA-DK-A6B1-01 1 67236080 67236080 A T TCTEX1D1 Missense_Mutation p.T44S 0.29 tolerated(0.16) benign(0.139) TCGA-DK-A6B1-01 1 70819715 70819715 C T ANKRD13C Missense_Mutation p.R126K 0.52 tolerated(0.25) benign(0.02) TCGA-DK-A6B1-01 20 30746281 30746281 C T TM9SF4 Silent p.F511F 0.47 TCGA-DK-A6B1-01 20 33030012 33030012 G C ITCH Splice_Site p.X331_splice 0.22 TCGA-DK-A6B1-01 20 50140482 50140482 C T NFATC2 Missense_Mutation p.A100T 0.19 tolerated(0.19) benign(0.002) TCGA-DK-A6B1-01 20 5923388 5923388 G A TRMT6 Missense_Mutation p.R238W 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B1-01 20 61488812 61488812 C G TCFL5 Missense_Mutation p.Q391H 0.42 tolerated(0.07) benign(0.048) TCGA-DK-A6B1-01 21 30338214 30338214 C A LTN1 Missense_Mutation p.W758C 0.29 deleterious(0.03) benign(0.082) TCGA-DK-A6B1-01 21 30338215 30338215 C G LTN1 Missense_Mutation p.W758S 0.29 tolerated(0.07) possibly_damaging(0.783) TCGA-DK-A6B1-01 21 37833622 37833622 G C CLDN14 Silent p.L124L 0.21 TCGA-DK-A6B1-01 22 20796242 20796242 G A KLHL22 3'UTR 0.85 TCGA-DK-A6B1-01 22 49042442 49042442 C G FAM19A5 Missense_Mutation p.T49S 0.16 deleterious(0.03) possibly_damaging(0.792) TCGA-DK-A6B1-01 2 11332352 11332352 G C ROCK2 Missense_Mutation p.S1362C 0.22 deleterious(0) probably_damaging(0.982) TCGA-DK-A6B1-01 2 179296957 179296957 T A PRKRA Missense_Mutation p.Y270F 0.08 tolerated(0.24) benign(0.046) TCGA-DK-A6B1-01 2 201683058 201683058 G A BZW1 Missense_Mutation p.R286H 0.52 deleterious(0) possibly_damaging(0.628) TCGA-DK-A6B1-01 2 219688987 219688987 G A PRKAG3 Silent p.H437H 0.14 TCGA-DK-A6B1-01 2 220334073 220334073 G C SPEG Missense_Mutation p.Q1229H 0.33 probably_damaging(0.978) TCGA-DK-A6B1-01 2 230456365 230456365 C T DNER Silent p.T172T 0.48 TCGA-DK-A6B1-01 2 25972633 25972633 G A ASXL2 Nonsense_Mutation p.Q598* 0.17 TCGA-DK-A6B1-01 2 27880452 27880452 G A SUPT7L Silent p.H168H 0.44 TCGA-DK-A6B1-01 2 37280725 37280725 C T HEATR5B Missense_Mutation p.E809K 0.30 tolerated(0.08) benign(0.202) TCGA-DK-A6B1-01 2 54081652 54081652 A G GPR75 Missense_Mutation p.F81S 0.52 deleterious(0) possibly_damaging(0.85) TCGA-DK-A6B1-01 2 71650620 71650620 A G ZNF638 Missense_Mutation p.I1326V 0.14 tolerated(0.81) benign(0.004) TCGA-DK-A6B1-01 2 74784248 74784248 C T DOK1 3'UTR 0.19 TCGA-DK-A6B1-01 3 124237266 124237266 G A KALRN Missense_Mutation p.R1650Q 0.29 tolerated_low_confidence(0.16) benign(0.024) TCGA-DK-A6B1-01 3 139081296 139081296 G A COPB2 Nonsense_Mutation p.Q650* 0.13 TCGA-DK-A6B1-01 3 150282083 150282083 T C EIF2A Intron 0.64 TCGA-DK-A6B1-01 3 193332657 193332657 C T OPA1 Nonsense_Mutation p.Q60* 0.28 TCGA-DK-A6B1-01 3 49695493 49695493 G A BSN Missense_Mutation p.R2835H 0.64 unknown(0) TCGA-DK-A6B1-01 3 51992103 51992103 C T PCBP4 Missense_Mutation p.E396K 0.30 deleterious(0.01) benign(0.242) TCGA-DK-A6B1-01 3 51994080 51994080 A T PCBP4 Intron 0.07 TCGA-DK-A6B1-01 3 63996290 63996290 A G PSMD6 3'UTR 0.33 TCGA-DK-A6B1-01 3 89448632 89448633 TA - EPHA3 Splice_Site p.X532_splice 0.25 TCGA-DK-A6B1-01 3 9803349 9803350 CA - CAMK1 Frame_Shift_Del p.V174Afs*14 0.14 TCGA-DK-A6B1-01 4 100201315 100201315 C T ADH1A Missense_Mutation p.G317E 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 4 100201316 100201316 C T ADH1A Missense_Mutation p.G317R 0.39 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 4 123207876 123207876 T C KIAA1109 Missense_Mutation p.I3073T 0.20 benign(0.05) TCGA-DK-A6B1-01 4 124322846 124322846 C T SPRY1 Nonsense_Mutation p.Q34* 0.05 TCGA-DK-A6B1-01 4 128703775 128703775 G T HSPA4L Nonsense_Mutation p.E24* 0.33 TCGA-DK-A6B1-01 4 147560402 147560402 C G POU4F2 Missense_Mutation p.S37W 0.59 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6B1-01 4 15444237 15444237 T C C1QTNF7 Silent p.H235H 0.17 TCGA-DK-A6B1-01 4 183245281 183245281 C A TENM3 Silent p.P36P 0.28 TCGA-DK-A6B1-01 4 5461922 5461922 C A STK32B Missense_Mutation p.F292L 0.17 tolerated(1) benign(0) TCGA-DK-A6B1-01 4 6380209 6380209 C T PPP2R2C Missense_Mutation p.E87K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-DK-A6B1-01 4 69403562 69403562 C T UGT2B17 Silent p.L458L 0.45 TCGA-DK-A6B1-01 4 71693748 71693748 A G GRSF1 Missense_Mutation p.I319T 0.26 deleterious(0) probably_damaging(0.944) TCGA-DK-A6B1-01 4 88766393 88766393 G A MEPE Missense_Mutation p.G125R 0.38 tolerated(0.29) benign(0.086) TCGA-DK-A6B1-01 5 122950114 122950114 G A CSNK1G3 3'UTR 0.51 TCGA-DK-A6B1-01 5 137354722 137354722 C T FAM13B Missense_Mutation p.E27K 0.66 deleterious(0) probably_damaging(0.991) TCGA-DK-A6B1-01 5 139905607 139905607 C T ANKHD1 Missense_Mutation p.P1507S 0.22 possibly_damaging(0.641) TCGA-DK-A6B1-01 5 140176085 140176085 G A PCDHA2 Silent p.A512A 0.04 TCGA-DK-A6B1-01 5 140739726 140739726 C T PCDHGB2 Silent p.C8C 0.57 TCGA-DK-A6B1-01 5 149677614 149677614 G A ARSI Silent p.V291V 0.29 TCGA-DK-A6B1-01 5 156375475 156375475 C T TIMD4 Missense_Mutation p.V266M 0.32 tolerated(0.1) possibly_damaging(0.59) TCGA-DK-A6B1-01 5 33459922 33459922 G C TARS Missense_Mutation p.E435D 0.21 tolerated(0.16) possibly_damaging(0.539) TCGA-DK-A6B1-01 5 33954552 33954552 G A SLC45A2 Missense_Mutation p.H316Y 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-DK-A6B1-01 6 144869906 144869906 G T UTRN Silent p.L2242L 0.28 TCGA-DK-A6B1-01 6 144869907 144869907 G T UTRN Missense_Mutation p.V2243L 0.28 tolerated(0.19) benign(0.011) TCGA-DK-A6B1-01 6 152265629 152265629 C T ESR1 Missense_Mutation p.A361V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B1-01 6 160240056 160240056 G A PNLDC1 Missense_Mutation p.E435K 0.58 deleterious(0.03) possibly_damaging(0.503) TCGA-DK-A6B1-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.14 TCGA-DK-A6B1-01 6 30231143 30231143 T C HCG17 Intron 0.06 TCGA-DK-A6B1-01 6 44329600 44329600 C T SPATS1 Missense_Mutation p.P149S 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 6 52344502 52344502 C T EFHC1 Silent p.N519N 0.31 TCGA-DK-A6B1-01 6 52993371 52993371 T C GCM1 Missense_Mutation p.N315S 0.24 tolerated(0.88) benign(0.001) TCGA-DK-A6B1-01 6 656428 656428 C T HUS1B Missense_Mutation p.A173T 0.10 deleterious(0.02) possibly_damaging(0.495) TCGA-DK-A6B1-01 7 103841286 103841286 A T ORC5 Missense_Mutation p.C96S 0.53 tolerated(0.14) possibly_damaging(0.725) TCGA-DK-A6B1-01 7 113558488 113558488 G A PPP1R3A Silent p.F188F 0.40 TCGA-DK-A6B1-01 7 131887583 131887583 T C PLXNA4 Missense_Mutation p.K803R 0.16 tolerated(0.36) benign(0.198) TCGA-DK-A6B1-01 7 134617839 134617839 C T CALD1 Missense_Mutation p.R107C 0.44 deleterious(0) unknown(0) TCGA-DK-A6B1-01 7 142120047 142120047 G A TRBV7-7 Silent p.L40L 0.24 TCGA-DK-A6B1-01 7 150217209 150217209 A C GIMAP7 Missense_Mutation p.K49N 0.07 deleterious(0) probably_damaging(0.97) TCGA-DK-A6B1-01 7 150776703 150776703 C T FASTK Missense_Mutation p.R130Q 0.09 tolerated_low_confidence(0.59) benign(0.001) TCGA-DK-A6B1-01 7 20444283 20444283 T A ITGB8 Missense_Mutation p.C574S 0.24 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B1-01 7 34888169 34888169 G A NPSR1 Missense_Mutation p.E307K 0.26 tolerated(0.46) benign(0.407) TCGA-DK-A6B1-01 7 4050746 4050746 G A SDK1 Splice_Site p.X760_splice 0.76 TCGA-DK-A6B1-01 7 97822764 97822764 C G LMTK2 Missense_Mutation p.T996S 0.17 deleterious(0) probably_damaging(0.99) TCGA-DK-A6B1-01 8 114449204 114449204 G A CSMD3 5'UTR 0.43 TCGA-DK-A6B1-01 8 22969274 22969275 - C TNFRSF10C Frame_Shift_Ins p.Q36Pfs*24 0.21 TCGA-DK-A6B1-01 9 100372706 100372722 GAAAACAGTGAGCTCCT - TSTD2 Frame_Shift_Del p.G248Rfs*8 0.49 TCGA-DK-A6B1-01 9 118982272 118982272 C T PAPPA Silent p.L659L 0.55 TCGA-DK-A6B1-01 9 123526953 123526953 C T FBXW2 Missense_Mutation p.A417T 0.27 tolerated(0.13) possibly_damaging(0.707) TCGA-DK-A6B1-01 9 129455523 129455523 G T LMX1B Missense_Mutation p.R221L 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A6B1-01 9 131730848 131730848 A T NUP188 Missense_Mutation p.I217F 0.23 deleterious(0) possibly_damaging(0.685) TCGA-DK-A6B1-01 9 135161869 135161869 C G SETX Missense_Mutation p.D2113H 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B1-01 9 138676432 138676432 G C KCNT1 Missense_Mutation p.D999H 0.75 deleterious(0) probably_damaging(0.954) TCGA-DK-A6B1-01 9 141010092 141010092 G A CACNA1B Missense_Mutation p.R1913Q 0.31 tolerated(0.42) benign(0.056) TCGA-DK-A6B1-01 X 112053215 112053278 CTGTGAAATTTGGAGACAATCAACAGGGTCTCAAATGTAAACTTTCATGCACATACTATTGGCC - AMOT Splice_Site p.X513_splice 0.44 TCGA-DK-A6B1-01 X 135498612 135498612 G C GPR112 Splice_Site p.X3069_splice 0.27 TCGA-DK-A6B1-01 X 48781020 48781020 G A OTUD5 Missense_Mutation p.T495I 0.56 tolerated(0.38) benign(0.096) TCGA-DK-A6B1-01 X 48932338 48932338 G A WDR45 3'UTR 0.50 TCGA-DK-A6B1-01 X 83362045 83362045 G A RPS6KA6 Missense_Mutation p.S372F 0.43 deleterious(0) probably_damaging(0.968) TCGA-DK-A6B2-01 10 100019161 100019161 C - LOXL4 Frame_Shift_Del p.D230Tfs*6 0.38 TCGA-DK-A6B2-01 10 102683740 102683740 A C FAM178A Missense_Mutation p.K328Q 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6B2-01 10 115372141 115372141 G A NRAP Missense_Mutation p.P1117L 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B2-01 10 118460503 118460503 T - HSPA12A Frame_Shift_Del p.K131Sfs*11 0.12 TCGA-DK-A6B2-01 10 124742270 124742270 C T PSTK Nonsense_Mutation p.R80* 0.14 TCGA-DK-A6B2-01 10 38241544 38241544 G C ZNF25 Missense_Mutation p.F294L 0.12 tolerated(0.2) benign(0.003) TCGA-DK-A6B2-01 10 403791 403791 C T DIP2C Missense_Mutation p.E961K 0.43 deleterious(0.04) benign(0.017) TCGA-DK-A6B2-01 10 61831368 61831368 T - ANK3 Frame_Shift_Del p.T3091Lfs*24 0.15 TCGA-DK-A6B2-01 10 67829086 67829086 C A CTNNA3 Missense_Mutation p.M713I 0.29 tolerated(0.07) unknown(0) TCGA-DK-A6B2-01 10 71160930 71160930 C G HK1 3'Flank 0.23 TCGA-DK-A6B2-01 10 73501457 73501457 G A CDH23 Missense_Mutation p.G1547S 0.45 tolerated(0.11) probably_damaging(0.986) TCGA-DK-A6B2-01 10 85974462 85974462 C T CDHR1 3'UTR 0.44 TCGA-DK-A6B2-01 10 87487628 87487628 C T GRID1 Missense_Mutation p.G506E 0.52 deleterious(0) probably_damaging(0.993) TCGA-DK-A6B2-01 10 93119 93119 C T TUBB8 Missense_Mutation p.E405K 0.13 deleterious_low_confidence(0.02) benign(0.343) TCGA-DK-A6B2-01 11 102589157 102589157 G C MMP8 Missense_Mutation p.Q258E 0.21 deleterious(0.01) possibly_damaging(0.718) TCGA-DK-A6B2-01 11 105732928 105732928 A G GRIA4 Silent p.L222L 0.15 TCGA-DK-A6B2-01 11 105795396 105795396 A T GRIA4 Missense_Mutation p.E583V 0.24 tolerated(0.16) benign(0.114) TCGA-DK-A6B2-01 11 113295379 113295379 C T DRD2 5'UTR 0.34 TCGA-DK-A6B2-01 11 114569243 114569243 C T NXPE2 Silent p.L203L 0.10 TCGA-DK-A6B2-01 11 118348833 118348833 G C KMT2A Missense_Mutation p.Q1162H 0.16 probably_damaging(0.996) TCGA-DK-A6B2-01 11 20112513 20112513 C G NAV2 Silent p.L1926L 0.24 TCGA-DK-A6B2-01 11 20112542 20112542 G T NAV2 Missense_Mutation p.R1936L 0.31 deleterious(0) probably_damaging(0.996) TCGA-DK-A6B2-01 11 31616365 31616365 G A ELP4 Missense_Mutation p.E144K 0.12 tolerated(0.12) benign(0.168) TCGA-DK-A6B2-01 11 55371373 55371373 G A OR4C11 Silent p.I159I 0.14 TCGA-DK-A6B2-01 11 55563189 55563189 T C OR5D14 Missense_Mutation p.I53T 0.19 deleterious(0.04) benign(0.021) TCGA-DK-A6B2-01 11 62543244 62543252 TCCACTGGG - TAF6L Intron 0.15 TCGA-DK-A6B2-01 11 62557438 62557438 A G TMEM179B Silent p.P193P 0.24 TCGA-DK-A6B2-01 11 6292053 6292053 G C CCKBR Intron 0.32 TCGA-DK-A6B2-01 11 63671582 63671582 C - MARK2 Frame_Shift_Del p.T549Rfs*67 0.44 TCGA-DK-A6B2-01 11 66259056 66259056 C T DPP3 Missense_Mutation p.S297F 0.22 deleterious(0) probably_damaging(0.94) TCGA-DK-A6B2-01 11 71293671 71293671 C - KRTAP5-11 Frame_Shift_Del p.S72Afs*99 0.18 TCGA-DK-A6B2-01 11 75439859 75439859 C A MOGAT2 Silent p.S225S 0.14 TCGA-DK-A6B2-01 11 84027905 84027905 T C DLG2 Intron 0.29 TCGA-DK-A6B2-01 11 85733472 85733472 A T PICALM Nonsense_Mutation p.Y130* 0.18 TCGA-DK-A6B2-01 11 94801096 94801096 C A SRSF8 Silent p.R236R 0.44 TCGA-DK-A6B2-01 11 94801097 94801097 G T SRSF8 Missense_Mutation p.R236L 0.43 deleterious_low_confidence(0) unknown(0) TCGA-DK-A6B2-01 12 10332039 10332039 G C TMEM52B 5'UTR 0.09 TCGA-DK-A6B2-01 12 122277887 122277887 T C HPD Missense_Mutation p.Q341R 0.22 tolerated(0.05) probably_damaging(0.979) TCGA-DK-A6B2-01 12 18858182 18858182 G C PLCZ1 Missense_Mutation p.A261G 0.09 deleterious(0) probably_damaging(0.967) TCGA-DK-A6B2-01 12 19489476 19489476 G A PLEKHA5 Missense_Mutation p.D826N 0.10 tolerated(0.09) possibly_damaging(0.579) TCGA-DK-A6B2-01 12 20885908 20885908 A C SLCO1C1 Silent p.R418R 0.13 TCGA-DK-A6B2-01 12 22068721 22068721 T C ABCC9 Missense_Mutation p.T233A 0.08 tolerated(0.71) benign(0.003) TCGA-DK-A6B2-01 12 29596409 29596409 A G OVCH1 Silent p.P1014P 0.44 TCGA-DK-A6B2-01 12 39696876 39696876 G - KIF21A Frame_Shift_Del p.P1541Lfs*6 0.15 TCGA-DK-A6B2-01 12 41337510 41337510 A G CNTN1 Silent p.G497G 0.13 TCGA-DK-A6B2-01 12 4409158 4409158 C T CCND2 Missense_Mutation p.R285W 0.08 deleterious(0) possibly_damaging(0.88) TCGA-DK-A6B2-01 12 45410226 45410226 C G DBX2 Missense_Mutation p.S288T 0.14 tolerated(0.08) possibly_damaging(0.725) TCGA-DK-A6B2-01 12 48537551 48537551 C G PFKM Missense_Mutation p.L683V 0.15 deleterious(0) possibly_damaging(0.738) TCGA-DK-A6B2-01 12 48723478 48723478 C T H1FNT Missense_Mutation p.A135V 0.31 tolerated(0.06) possibly_damaging(0.873) TCGA-DK-A6B2-01 12 56115489 56115489 G A RDH5 Silent p.V109V 0.18 TCGA-DK-A6B2-01 12 56558280 56558280 G A SMARCC2 Silent p.F1125F 0.40 TCGA-DK-A6B2-01 12 56558395 56558397 GGC - SMARCC2 In_Frame_Del p.P1092del 0.38 TCGA-DK-A6B2-01 12 69747100 69747100 T C LYZ 3'UTR 0.07 TCGA-DK-A6B2-01 12 78604227 78604227 A T NAV3 Missense_Mutation p.Q2341L 0.06 deleterious(0) probably_damaging(0.996) TCGA-DK-A6B2-01 12 85255542 85255542 G C SLC6A15 Missense_Mutation p.P688A 0.08 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-DK-A6B2-01 12 97102420 97102420 C T C12orf55 Missense_Mutation p.A2188V 0.46 tolerated(1) benign(0.002) TCGA-DK-A6B2-01 13 112722046 112722046 C G SOX1 Missense_Mutation p.P25R 0.45 tolerated(0.23) benign(0.072) TCGA-DK-A6B2-01 13 25875885 25875885 G A NUPL1 5'UTR 0.28 TCGA-DK-A6B2-01 13 36903500 36903500 C T SPG20 Missense_Mutation p.R388K 0.16 tolerated(1) benign(0) TCGA-DK-A6B2-01 13 42739569 42739569 G T DGKH Missense_Mutation p.G320C 0.22 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B2-01 13 86368836 86368836 T G SLITRK6 Missense_Mutation p.D603A 0.20 deleterious(0.02) benign(0.415) TCGA-DK-A6B2-01 13 88328772 88328772 G A SLITRK5 Missense_Mutation p.A377T 0.17 tolerated(0.15) benign(0.011) TCGA-DK-A6B2-01 13 88330567 88330567 A T SLITRK5 3'UTR 0.23 TCGA-DK-A6B2-01 14 105419747 105419747 T A AHNAK2 Nonsense_Mutation p.K681* 0.58 TCGA-DK-A6B2-01 14 106235604 106235604 C T IGHG3 Silent p.Q368Q 0.43 TCGA-DK-A6B2-01 14 21831229 21831229 C T SUPT16H Missense_Mutation p.R492Q 0.56 deleterious(0) probably_damaging(0.938) TCGA-DK-A6B2-01 14 23746018 23746018 G C HOMEZ Missense_Mutation p.S140C 0.59 deleterious(0) possibly_damaging(0.906) TCGA-DK-A6B2-01 14 45542577 45542577 G A FAM179B Missense_Mutation p.G1659E 0.21 deleterious(0) benign(0.209) TCGA-DK-A6B2-01 14 51464808 51464808 G A TRIM9 Silent p.V521V 0.48 TCGA-DK-A6B2-01 14 65203590 65203604 CAGGCAACTCAACGA - PLEKHG3 In_Frame_Del p.R400_E404del 0.45 TCGA-DK-A6B2-01 14 73572608 73572608 G A RBM25 Missense_Mutation p.R399K 0.56 unknown(0) TCGA-DK-A6B2-01 15 22369285 22369285 G T OR4M2 Missense_Mutation p.R237M 0.12 deleterious(0.01) possibly_damaging(0.9) TCGA-DK-A6B2-01 15 41023470 41023470 G A RAD51 3'UTR 0.24 TCGA-DK-A6B2-01 15 43568639 43568639 C T TGM7 3'UTR 0.34 TCGA-DK-A6B2-01 15 49034173 49034173 T A CEP152 Missense_Mutation p.Q1320H 0.20 deleterious(0.05) benign(0.188) TCGA-DK-A6B2-01 15 55839210 55839210 G C PYGO1 Missense_Mutation p.L91V 0.32 deleterious(0.02) benign(0.251) TCGA-DK-A6B2-01 15 68119288 68119288 G A SKOR1 Silent p.V481V 0.35 TCGA-DK-A6B2-01 15 80414101 80414101 G A ZFAND6 Missense_Mutation p.D68N 0.18 tolerated(0.15) benign(0.032) TCGA-DK-A6B2-01 15 81213415 81213415 C T KIAA1199 Silent p.L682L 0.15 TCGA-DK-A6B2-01 15 90138788 90138788 A G TICRR Missense_Mutation p.T616A 0.16 tolerated(0.27) benign(0.012) TCGA-DK-A6B2-01 16 1449500 1449500 G A UNKL Silent p.F203F 0.22 TCGA-DK-A6B2-01 16 2136340 2136340 C T TSC2 Silent p.D1603D 0.31 TCGA-DK-A6B2-01 16 2578324 2578324 G C AMDHD2 Missense_Mutation p.D269H 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 16 31073359 31073359 C T ZNF668 Nonsense_Mutation p.R183* 0.17 TCGA-DK-A6B2-01 16 31089155 31089155 C A ZNF646 Missense_Mutation p.L504I 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-DK-A6B2-01 16 4835988 4835988 C T SEPT12 Silent p.L95L 0.30 TCGA-DK-A6B2-01 16 68002376 68002376 G T SLC12A4 Missense_Mutation p.T61N 0.09 tolerated_low_confidence(0.16) benign(0.005) TCGA-DK-A6B2-01 16 70594456 70594456 G A SF3B3 Missense_Mutation p.V699M 0.21 deleterious(0) probably_damaging(0.984) TCGA-DK-A6B2-01 17 15952194 15952194 G A NCOR1 Silent p.L2167L 0.36 TCGA-DK-A6B2-01 17 18541224 18541224 G C TBC1D28 Missense_Mutation p.S150R 0.25 tolerated(0.21) benign(0.081) TCGA-DK-A6B2-01 17 33768797 33768797 G A SLFN13 Silent p.L569L 0.11 TCGA-DK-A6B2-01 17 41020643 41020643 T A AOC4P RNA 0.34 TCGA-DK-A6B2-01 17 46629911 46629911 T C HOXB3 5'UTR 0.50 TCGA-DK-A6B2-01 17 48676977 48676977 G A CACNA1G Silent p.E1149E 0.22 TCGA-DK-A6B2-01 17 60342519 60342519 G T TBC1D3P2 3'Flank 0.25 TCGA-DK-A6B2-01 17 62856223 62856223 C A LRRC37A3 Silent p.A1347A 0.41 TCGA-DK-A6B2-01 17 74921141 74921141 G C MGAT5B Missense_Mutation p.Q384H 0.39 tolerated(0.18) probably_damaging(0.967) TCGA-DK-A6B2-01 17 78082309 78082309 A G GAA Missense_Mutation p.Y366C 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-DK-A6B2-01 17 79095819 79095819 G C AATK Missense_Mutation p.F639L 0.28 tolerated(0.53) benign(0.015) TCGA-DK-A6B2-01 17 995085 995085 C T ABR Missense_Mutation p.M117I 0.17 deleterious(0) benign(0.117) TCGA-DK-A6B2-01 18 47113192 47113192 G A LIPG Missense_Mutation p.D485N 0.43 tolerated(0.06) benign(0.12) TCGA-DK-A6B2-01 18 7231328 7231328 C T LRRC30 Silent p.P64P 0.17 TCGA-DK-A6B2-01 19 10431424 10431424 G C RAVER1 Missense_Mutation p.F576L 0.31 tolerated(0.15) possibly_damaging(0.719) TCGA-DK-A6B2-01 19 19136927 19136927 C T SUGP2 Missense_Mutation p.R77K 0.16 deleterious(0.05) benign(0.243) TCGA-DK-A6B2-01 19 1986969 1986969 G C BTBD2 Missense_Mutation p.H426D 0.33 tolerated(0.12) benign(0.042) TCGA-DK-A6B2-01 19 22836195 22836195 G C ZNF492 5'UTR 0.17 TCGA-DK-A6B2-01 19 36369507 36369507 C A APLP1 Missense_Mutation p.A534E 0.19 tolerated(0.97) benign(0.006) TCGA-DK-A6B2-01 19 41105136 41105136 G A LTBP4 Silent p.T60T 0.26 TCGA-DK-A6B2-01 19 46095008 46095008 C T GPR4 Silent p.L39L 0.33 TCGA-DK-A6B2-01 19 46095199 46095199 G T GPR4 5'UTR 0.21 TCGA-DK-A6B2-01 19 46280973 46280973 G C DMPK Missense_Mutation p.F288L 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 19 54567012 54567012 G A VSTM1 Missense_Mutation p.S7F 0.29 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-DK-A6B2-01 19 54822560 54822560 C G LILRA5 Intron 0.25 TCGA-DK-A6B2-01 19 55417989 55417989 T A NCR1 Missense_Mutation p.L60Q 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 19 56204330 56204330 C T EPN1 Silent p.F483F 0.11 TCGA-DK-A6B2-01 19 7828284 7828284 G T CLEC4M Missense_Mutation p.D18Y 0.23 deleterious(0) possibly_damaging(0.792) TCGA-DK-A6B2-01 19 7985239 7985239 C G SNAPC2 5'UTR 0.18 TCGA-DK-A6B2-01 19 8161843 8161843 C T FBN3 Missense_Mutation p.D1779N 0.21 tolerated(0.2) benign(0.03) TCGA-DK-A6B2-01 1 109805452 109805452 G C CELSR2 Silent p.L1523L 0.24 TCGA-DK-A6B2-01 1 111495160 111495160 C G LRIF1 Missense_Mutation p.E116Q 0.42 deleterious(0.02) benign(0.035) TCGA-DK-A6B2-01 1 12908145 12908145 T C HNRNPCL1 5'UTR 0.11 TCGA-DK-A6B2-01 1 13669158 13669158 A C PRAMEF14 Missense_Mutation p.M391R 0.34 deleterious(0.03) possibly_damaging(0.474) TCGA-DK-A6B2-01 1 145474702 145474702 G A ANKRD34A Silent p.A458A 0.41 TCGA-DK-A6B2-01 1 150305477 150305477 G A PRPF3 Missense_Mutation p.E179K 0.38 tolerated(0.64) benign(0.005) TCGA-DK-A6B2-01 1 151009128 151009128 T C BNIPL 5'UTR 0.29 TCGA-DK-A6B2-01 1 152326143 152326143 A T FLG2 Silent p.A1373A 0.31 TCGA-DK-A6B2-01 1 160794030 160794030 G A LY9 Silent p.R630R 0.06 TCGA-DK-A6B2-01 1 161021247 161021247 G C ARHGAP30 Missense_Mutation p.S426C 0.07 deleterious(0.02) benign(0.053) TCGA-DK-A6B2-01 1 161201248 161201248 C T NR1I3 Missense_Mutation p.D189N 0.06 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B2-01 1 171605550 171605550 C G MYOC Missense_Mutation p.V344L 0.11 tolerated(1) benign(0.014) TCGA-DK-A6B2-01 1 178863109 178863109 C G RALGPS2 Missense_Mutation p.Q461E 0.39 tolerated(0.83) benign(0.01) TCGA-DK-A6B2-01 1 207850847 207850847 G A CR1L Missense_Mutation p.G71R 0.13 tolerated(0.74) benign(0.036) TCGA-DK-A6B2-01 1 213415629 213415629 T C RPS6KC1 Missense_Mutation p.L937S 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 1 226829730 226829730 G A ITPKB Silent p.P781P 0.55 TCGA-DK-A6B2-01 1 228596357 228596357 C T TRIM17 Missense_Mutation p.G327R 0.11 tolerated(0.07) benign(0.025) TCGA-DK-A6B2-01 1 230461091 230461091 C T PGBD5 Silent p.L379L 0.50 TCGA-DK-A6B2-01 1 237632487 237632487 G A RYR2 Missense_Mutation p.G570S 0.50 possibly_damaging(0.905) TCGA-DK-A6B2-01 1 237872220 237872220 T C RYR2 Silent p.L3322L 0.54 TCGA-DK-A6B2-01 1 27106861 27106861 C T ARID1A Nonsense_Mutation p.R2158* 0.14 TCGA-DK-A6B2-01 1 27240326 27240326 G A NR0B2 Missense_Mutation p.R36C 0.33 deleterious(0.02) possibly_damaging(0.513) TCGA-DK-A6B2-01 1 29476693 29476693 C T SRSF4 Missense_Mutation p.R197Q 0.40 deleterious(0.01) benign(0.238) TCGA-DK-A6B2-01 1 33567476 33567476 C G ADC Intron 0.57 TCGA-DK-A6B2-01 1 43779505 43779505 C T TIE1 Nonsense_Mutation p.Q759* 0.16 TCGA-DK-A6B2-01 1 92613275 92613275 G T BTBD8 Nonsense_Mutation p.E352* 0.11 TCGA-DK-A6B2-01 1 92613277 92613277 G A BTBD8 Silent p.E352E 0.10 TCGA-DK-A6B2-01 20 43929838 43929838 G C MATN4 Missense_Mutation p.H265D 0.10 benign(0.011) TCGA-DK-A6B2-01 21 31744483 31744483 C T KRTAP13-2 Missense_Mutation p.D17N 0.51 tolerated(0.05) benign(0.009) TCGA-DK-A6B2-01 21 33297040 33297040 A T HUNK Silent p.V174V 0.14 TCGA-DK-A6B2-01 21 34051071 34051071 T C SYNJ1 Missense_Mutation p.N504S 0.61 tolerated(0.28) probably_damaging(0.982) TCGA-DK-A6B2-01 21 35138249 35138249 G A ITSN1 Missense_Mutation p.D287N 0.10 deleterious(0) unknown(0) TCGA-DK-A6B2-01 21 42804031 42804031 G A MX1 Missense_Mutation p.D12N 0.15 tolerated_low_confidence(0.5) benign(0.006) TCGA-DK-A6B2-01 21 43164042 43164042 C T RIPK4 Missense_Mutation p.D399N 0.12 deleterious(0.05) possibly_damaging(0.607) TCGA-DK-A6B2-01 21 44182246 44182246 C T PDE9A Missense_Mutation p.P380L 0.05 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B2-01 22 19124897 19124897 G A DGCR14 Missense_Mutation p.P325L 0.43 deleterious(0) possibly_damaging(0.899) TCGA-DK-A6B2-01 22 24086128 24086128 G A ZNF70 Silent p.F400F 0.53 TCGA-DK-A6B2-01 22 24086359 24086359 G A ZNF70 Silent p.L323L 0.48 TCGA-DK-A6B2-01 22 28315209 28315209 G A PITPNB 5'UTR 0.30 TCGA-DK-A6B2-01 22 36681343 36681343 C A MYH9 Missense_Mutation p.E1769D 0.31 possibly_damaging(0.755) TCGA-DK-A6B2-01 22 38165183 38165183 C T TRIOBP Missense_Mutation p.R2242C 0.39 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B2-01 22 39263132 39263132 C T CBX6 Silent p.S107S 0.60 TCGA-DK-A6B2-01 22 50899676 50899676 G A SBF1 Missense_Mutation p.A960V 0.60 deleterious(0) benign(0.422) TCGA-DK-A6B2-01 2 116283482 116283482 C A DPP10 Missense_Mutation p.F129L 0.33 tolerated(0.94) benign(0.01) TCGA-DK-A6B2-01 2 132021837 132021837 G C POTEE Missense_Mutation p.E937Q 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DK-A6B2-01 2 132241740 132241740 C T MZT2A Missense_Mutation p.R124H 0.20 tolerated(0.05) probably_damaging(0.987) TCGA-DK-A6B2-01 2 133543163 133543163 C T NCKAP5 Silent p.K407K 0.25 TCGA-DK-A6B2-01 2 136575148 136575148 C T LCT Silent p.E490E 0.19 TCGA-DK-A6B2-01 2 141986993 141986993 T C LRP1B Silent p.P203P 0.35 TCGA-DK-A6B2-01 2 160181350 160181350 T C BAZ2B Missense_Mutation p.T2109A 0.22 possibly_damaging(0.885) TCGA-DK-A6B2-01 2 179498207 179498207 A T TTN Silent p.L14293L 0.28 TCGA-DK-A6B2-01 2 201477419 201477419 G T AOX1 Nonsense_Mutation p.E451* 0.20 TCGA-DK-A6B2-01 2 207175585 207175585 G A ZDBF2 Silent p.P2111P 0.16 TCGA-DK-A6B2-01 2 212522505 212522505 G T ERBB4 Silent p.G640G 0.39 TCGA-DK-A6B2-01 2 224822290 224822290 G A MRPL44 Missense_Mutation p.G34E 0.12 tolerated(0.28) possibly_damaging(0.787) TCGA-DK-A6B2-01 2 228113232 228113232 C A COL4A3 Missense_Mutation p.P181H 0.36 benign(0.246) TCGA-DK-A6B2-01 2 235950598 235950598 G A SH3BP4 Missense_Mutation p.M395I 0.45 tolerated(0.06) benign(0.019) TCGA-DK-A6B2-01 2 50758469 50758469 G T NRXN1 Missense_Mutation p.S788Y 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 2 73679650 73679650 C T ALMS1 Missense_Mutation p.S1998L 0.26 probably_damaging(0.975) TCGA-DK-A6B2-01 2 80835396 80835396 G C CTNNA2 Missense_Mutation p.V795L 0.08 deleterious(0) possibly_damaging(0.839) TCGA-DK-A6B2-01 3 121134743 121134743 G C STXBP5L Missense_Mutation p.E1076Q 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-DK-A6B2-01 3 126386070 126386070 A G NUP210P1 RNA 0.34 TCGA-DK-A6B2-01 3 127454638 127454638 A T MGLL Intron 0.11 TCGA-DK-A6B2-01 3 13438885 13438885 C A NUP210 Missense_Mutation p.E136D 0.16 deleterious(0.01) benign(0.24) TCGA-DK-A6B2-01 3 137991854 137991854 C T ARMC8 Nonsense_Mutation p.R495* 0.13 TCGA-DK-A6B2-01 3 155199886 155199886 C G PLCH1 Missense_Mutation p.S1318T 0.13 tolerated_low_confidence(0.06) benign(0.008) TCGA-DK-A6B2-01 3 178948096 178948096 G C PIK3CA Missense_Mutation p.L956F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B2-01 3 183705701 183705701 C A ABCC5 Nonsense_Mutation p.E150* 0.28 TCGA-DK-A6B2-01 3 183732223 183732223 C G ABCC5 5'UTR 0.29 TCGA-DK-A6B2-01 3 33686800 33686800 C T CLASP2 Intron 0.17 TCGA-DK-A6B2-01 3 38061753 38061754 - AG PLCD1 Frame_Shift_Ins p.Y63Sfs*68 0.36 TCGA-DK-A6B2-01 3 38950677 38950677 A T SCN11A Silent p.R370R 0.38 TCGA-DK-A6B2-01 3 50331102 50331102 G A HYAL3 Silent p.G315G 0.22 TCGA-DK-A6B2-01 3 73004478 73004478 G A GXYLT2 Missense_Mutation p.R277Q 0.18 deleterious(0) possibly_damaging(0.875) TCGA-DK-A6B2-01 4 120982076 120982076 C T MAD2L1 Missense_Mutation p.R133K 0.25 deleterious(0) possibly_damaging(0.568) TCGA-DK-A6B2-01 4 122085262 122085262 C A TNIP3 Missense_Mutation p.G84C 0.21 deleterious(0.04) benign(0.016) TCGA-DK-A6B2-01 4 126402879 126402879 T C FAT4 Missense_Mutation p.Y4268H 0.26 possibly_damaging(0.908) TCGA-DK-A6B2-01 4 156618262 156618262 G T GUCY1A3 Silent p.L81L 0.26 TCGA-DK-A6B2-01 4 166915565 166915565 G A TLL1 Missense_Mutation p.V132I 0.19 tolerated(0.19) benign(0.001) TCGA-DK-A6B2-01 4 22425867 22425867 G A GPR125 Missense_Mutation p.L518F 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B2-01 4 30921799 30921799 G C PCDH7 Missense_Mutation p.V1067L 0.33 tolerated(0.53) probably_damaging(0.957) TCGA-DK-A6B2-01 4 57221467 57221467 G A AASDH Silent p.L328L 0.27 TCGA-DK-A6B2-01 4 57351016 57351016 A G SRP72 Missense_Mutation p.I358V 0.24 tolerated(0.71) benign(0.014) TCGA-DK-A6B2-01 4 6051566 6051566 C G JAKMIP1 Missense_Mutation p.D648H 0.15 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 5 11346614 11346614 C T CTNND2 Missense_Mutation p.A500T 0.19 deleterious(0.04) benign(0.082) TCGA-DK-A6B2-01 5 118503550 118503550 G C DMXL1 Missense_Mutation p.E1797Q 0.53 tolerated(0.05) benign(0.143) TCGA-DK-A6B2-01 5 123979304 123979304 A G ZNF608 Missense_Mutation p.V1399A 0.37 tolerated(0.81) benign(0.003) TCGA-DK-A6B2-01 5 13793680 13793680 T A DNAH5 Missense_Mutation p.Q2723L 0.47 benign(0.005) TCGA-DK-A6B2-01 5 140596021 140596021 C T PCDHB13 Missense_Mutation p.P776S 0.17 tolerated_low_confidence(0.55) benign(0.002) TCGA-DK-A6B2-01 5 169697867 169697867 C T LCP2 Missense_Mutation p.D127N 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6B2-01 5 170239291 170239291 G C GABRP 3'UTR 0.52 TCGA-DK-A6B2-01 5 33441176 33441176 C T TARS 5'UTR 0.52 TCGA-DK-A6B2-01 5 35876144 35876144 T A IL7R Missense_Mutation p.D312E 0.17 deleterious(0) possibly_damaging(0.742) TCGA-DK-A6B2-01 5 68805247 68805247 C A OCLN Silent p.G110G 0.20 TCGA-DK-A6B2-01 6 117923490 117923490 C T GOPC 5'UTR 0.32 TCGA-DK-A6B2-01 6 144416658 144416658 C G SF3B5 5'UTR 0.24 TCGA-DK-A6B2-01 6 155732475 155732475 C G NOX3 Missense_Mutation p.C443S 0.11 deleterious(0.02) probably_damaging(1) TCGA-DK-A6B2-01 6 167343133 167343133 C G RNASET2 Silent p.L238L 0.17 TCGA-DK-A6B2-01 6 167704998 167704998 C T UNC93A Silent p.N7N 0.20 TCGA-DK-A6B2-01 6 25845528 25845528 T C SLC17A3 Splice_Site 0.45 TCGA-DK-A6B2-01 6 32096866 32096866 C T FKBPL Missense_Mutation p.R231Q 0.40 tolerated(0.1) benign(0.43) TCGA-DK-A6B2-01 6 33236822 33236822 C G VPS52 Missense_Mutation p.D173H 0.14 deleterious(0) probably_damaging(0.994) TCGA-DK-A6B2-01 6 38941541 38941541 A T DNAH8 Silent p.V3993V 0.40 TCGA-DK-A6B2-01 6 43481336 43481336 T C YIPF3 Missense_Mutation p.N144S 0.48 tolerated(0.58) benign(0.004) TCGA-DK-A6B2-01 6 45073659 45073659 C A SUPT3H Silent p.L73L 0.13 TCGA-DK-A6B2-01 6 53989525 53989525 T C MLIP Silent p.A158A 0.22 TCGA-DK-A6B2-01 6 73332235 73332235 C G KCNQ5 Silent p.V106V 0.26 TCGA-DK-A6B2-01 6 74063703 74063703 G A DPPA5 Silent p.L55L 0.46 TCGA-DK-A6B2-01 6 7580988 7580988 C G DSP Missense_Mutation p.T1522R 0.15 benign(0.171) TCGA-DK-A6B2-01 6 90564591 90564591 G C CASP8AP2 RNA 0.23 TCGA-DK-A6B2-01 7 100681960 100681960 T - MUC17 Frame_Shift_Del p.V2422Lfs*37 0.29 TCGA-DK-A6B2-01 7 119915151 119915151 C A KCND2 Missense_Mutation p.D155E 0.39 tolerated(1) benign(0.002) TCGA-DK-A6B2-01 7 121652005 121652005 A T PTPRZ1 Missense_Mutation p.I969L 0.58 tolerated_low_confidence(0.22) benign(0) TCGA-DK-A6B2-01 7 131888097 131888097 G A PLXNA4 Missense_Mutation p.P794S 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B2-01 7 151949141 151949141 G T KMT2C Missense_Mutation p.H502N 0.67 benign(0.001) TCGA-DK-A6B2-01 7 22985519 22985519 C G FAM126A Missense_Mutation p.E419Q 0.52 deleterious(0.03) possibly_damaging(0.791) TCGA-DK-A6B2-01 7 32908852 32908852 G A KBTBD2 3'UTR 0.57 TCGA-DK-A6B2-01 7 33423321 33423321 C T BBS9 Silent p.L611L 0.43 TCGA-DK-A6B2-01 7 75187038 75187038 G A HIP1 Nonsense_Mutation p.Q501* 0.35 TCGA-DK-A6B2-01 7 97821353 97821353 G C LMTK2 Missense_Mutation p.G526R 0.35 deleterious(0) probably_damaging(0.952) TCGA-DK-A6B2-01 8 124340703 124340703 C T ATAD2 Missense_Mutation p.E1199K 0.17 tolerated(0.1) benign(0.059) TCGA-DK-A6B2-01 8 145657806 145657806 G A TONSL Silent p.N1199N 0.13 TCGA-DK-A6B2-01 8 21848377 21848377 G T XPO7 Missense_Mutation p.R663L 0.33 deleterious(0.02) probably_damaging(0.977) TCGA-DK-A6B2-01 8 48719725 48719725 C T PRKDC Missense_Mutation p.M3239I 0.13 benign(0.287) TCGA-DK-A6B2-01 8 52320772 52320772 C T PXDNL Missense_Mutation p.A1138T 0.07 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B2-01 8 56686266 56686266 G A TGS1 Missense_Mutation p.R30K 0.08 deleterious(0.02) benign(0.338) TCGA-DK-A6B2-01 8 72123472 72123472 C T EYA1 Silent p.E539E 0.15 TCGA-DK-A6B2-01 8 96166657 96166657 T C PLEKHF2 Missense_Mutation p.C129R 0.50 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B2-01 8 99440700 99440700 C G KCNS2 Missense_Mutation p.P165A 0.07 tolerated(0.51) benign(0.04) TCGA-DK-A6B2-01 8 99440702 99440702 C A KCNS2 Silent p.P165P 0.07 TCGA-DK-A6B2-01 9 100616370 100616370 C A FOXE1 Nonsense_Mutation p.Y58* 0.19 TCGA-DK-A6B2-01 9 107361424 107361424 T G OR13C5 Missense_Mutation p.T91P 0.09 deleterious(0.01) possibly_damaging(0.851) TCGA-DK-A6B2-01 9 137987734 137987734 G T OLFM1 Nonsense_Mutation p.E91* 0.65 TCGA-DK-A6B2-01 9 139395037 139395037 C T NOTCH1 Silent p.A1967A 0.13 TCGA-DK-A6B2-01 9 18777400 18777400 C T ADAMTSL1 Missense_Mutation p.P1058L 0.22 tolerated(0.11) benign(0.004) TCGA-DK-A6B2-01 9 74842885 74842885 C T GDA Silent p.L283L 0.58 TCGA-DK-A6B2-01 9 77347620 77347620 T C TRPM6 Missense_Mutation p.I1937V 0.65 tolerated(0.09) possibly_damaging(0.885) TCGA-DK-A6B2-01 9 87570363 87570363 G A NTRK2 Silent p.G701G 0.15 TCGA-DK-A6B2-01 X 107840708 107840708 G A COL4A5 Silent p.L563L 0.61 TCGA-DK-A6B2-01 X 13061301 13061301 A T FAM9C Missense_Mutation p.V43E 0.25 deleterious(0) possibly_damaging(0.804) TCGA-DK-A6B2-01 X 134294477 134294477 C A CT55 Missense_Mutation p.D95Y 0.29 deleterious(0.02) benign(0.116) TCGA-DK-A6B2-01 X 140984520 140984520 G A MAGEC3 Intron 0.34 TCGA-DK-A6B2-01 X 151821098 151821098 C T GABRQ Missense_Mutation p.T418M 0.33 tolerated(0.07) benign(0.021) TCGA-DK-A6B2-01 X 17819601 17819601 G A RAI2 Missense_Mutation p.P177L 0.35 tolerated(0.9) probably_damaging(0.995) TCGA-DK-A6B2-01 X 26157474 26157474 G A MAGEB18 Silent p.T124T 0.70 TCGA-DK-A6B2-01 X 37514951 37514951 C T LANCL3 Missense_Mutation p.P195L 0.61 tolerated(0.08) benign(0.11) TCGA-DK-A6B2-01 X 65414978 65414978 G A HEPH Missense_Mutation p.V524M 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A6B2-01 X 70349569 70349569 G C MED12 Missense_Mutation p.G1244A 0.67 benign(0.005) TCGA-DK-A6B2-01 X 70349942 70349942 G A MED12 Missense_Mutation p.D1309N 0.46 possibly_damaging(0.882) TCGA-DK-A6B5-01 10 120867475 120867475 C T FAM45A Intron 0.35 TCGA-DK-A6B5-01 10 26414472 26414472 T C MYO3A Silent p.Y683Y 0.38 TCGA-DK-A6B5-01 10 26462934 26462934 G A MYO3A Silent p.E1247E 0.30 TCGA-DK-A6B5-01 10 50723753 50723753 T A ERCC6-PGBD3 Missense_Mutation p.I938F 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-DK-A6B5-01 10 69676054 69676054 T G SIRT1 Missense_Mutation p.Y650D 0.09 deleterious(0) probably_damaging(0.933) TCGA-DK-A6B5-01 10 74034990 74034990 G T DDIT4 3'UTR 0.31 TCGA-DK-A6B5-01 10 94834175 94834175 C G CYP26A1 Missense_Mutation p.I100M 0.05 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 10 98742507 98742507 A C C10orf12 Missense_Mutation p.S454R 0.41 tolerated(0.54) benign(0.004) TCGA-DK-A6B5-01 10 99079918 99079918 C A FRAT1 Silent p.L236L 0.24 TCGA-DK-A6B5-01 11 100179090 100179090 G T CNTN5 Splice_Site p.X874_splice 0.24 TCGA-DK-A6B5-01 11 102221618 102221618 G C BIRC2 Missense_Mutation p.L313F 0.04 deleterious(0) probably_damaging(0.984) TCGA-DK-A6B5-01 11 10772844 10772844 G A CTR9 5'UTR 0.50 TCGA-DK-A6B5-01 11 1264235 1264235 C A MUC5B Missense_Mutation p.T2042N 0.60 unknown(0) TCGA-DK-A6B5-01 11 27528396 27528396 A G LIN7C 5'Flank 0.31 TCGA-DK-A6B5-01 11 40136974 40136974 A C LRRC4C Missense_Mutation p.L290W 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 11 62434972 62434972 G C METTL12 3'UTR 0.40 TCGA-DK-A6B5-01 11 8705812 8705812 T A RPL27A Intron 0.57 TCGA-DK-A6B5-01 12 100452908 100452911 ATTG TTT UHRF1BP1L Frame_Shift_Del p.P715Qfs*5 0.28 TCGA-DK-A6B5-01 12 121154715 121154715 G T UNC119B Silent p.R171R 0.26 TCGA-DK-A6B5-01 12 130648531 130648531 A T FZD10 Missense_Mutation p.E348D 0.26 tolerated(0.08) probably_damaging(0.995) TCGA-DK-A6B5-01 12 3104056 3104056 G A TEAD4 Missense_Mutation p.V42M 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 12 45173789 45173789 T C NELL2 Missense_Mutation p.S168G 0.06 deleterious(0) possibly_damaging(0.478) TCGA-DK-A6B5-01 12 6645883 6645883 A G GAPDH Missense_Mutation p.K55E 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-DK-A6B5-01 12 7869697 7869697 C T DPPA3 3'UTR 0.28 TCGA-DK-A6B5-01 12 81101925 81101925 C T MYF6 Missense_Mutation p.R143W 0.41 deleterious(0) probably_damaging(0.931) TCGA-DK-A6B5-01 12 8998700 8998700 T G A2ML1 Missense_Mutation p.L522R 0.34 deleterious(0) probably_damaging(0.992) TCGA-DK-A6B5-01 13 100543616 100543616 G T CLYBL Silent p.L324L 0.17 TCGA-DK-A6B5-01 13 103249373 103249373 C T TPP2 5'UTR 0.20 TCGA-DK-A6B5-01 13 25670388 25670388 C T PABPC3 Missense_Mutation p.L18F 0.12 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B5-01 13 32893373 32893373 C G BRCA2 Nonsense_Mutation p.S76* 0.26 TCGA-DK-A6B5-01 13 37678360 37678360 C T CSNK1A1L 3'UTR 0.25 TCGA-DK-A6B5-01 13 50586671 50586671 G A TRIM13 Missense_Mutation p.E202K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-DK-A6B5-01 14 101195403 101195403 G C DLK1 Missense_Mutation p.D88H 0.36 deleterious(0) probably_damaging(0.97) TCGA-DK-A6B5-01 14 20502477 20502477 G A OR4K13 Silent p.S147S 0.09 TCGA-DK-A6B5-01 14 21967254 21967254 C T METTL3 Missense_Mutation p.E516K 0.70 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 14 31376124 31376124 T G STRN3 Missense_Mutation p.Q616P 0.60 tolerated(0.33) benign(0) TCGA-DK-A6B5-01 14 36841122 36841122 C T DPPA3P2 RNA 0.10 TCGA-DK-A6B5-01 14 57082727 57082728 AT - TMEM260 Frame_Shift_Del p.I309Mfs*69 0.43 TCGA-DK-A6B5-01 15 20169926 20169926 C A IGHV1OR15-9 Missense_Mutation p.V116L 0.17 deleterious(0.01) benign(0.009) TCGA-DK-A6B5-01 15 33905427 33905427 G A RYR3 Silent p.L736L 0.52 TCGA-DK-A6B5-01 15 41549162 41549162 G T CHP1 Silent p.R65R 0.53 TCGA-DK-A6B5-01 15 45386242 45386242 G A DUOX2 3'UTR 0.36 TCGA-DK-A6B5-01 15 45386264 45386264 G T DUOX2 3'UTR 0.45 TCGA-DK-A6B5-01 15 45386341 45386341 G C DUOX2 3'UTR 0.49 TCGA-DK-A6B5-01 15 45386791 45386791 G C DUOX2 Missense_Mutation p.F1498L 0.44 deleterious(0) probably_damaging(0.996) TCGA-DK-A6B5-01 15 45386827 45386827 G T DUOX2 Silent p.S1486S 0.56 TCGA-DK-A6B5-01 15 45387155 45387155 G C DUOX2 Missense_Mutation p.F1458L 0.47 deleterious(0) possibly_damaging(0.642) TCGA-DK-A6B5-01 15 45387278 45387278 G C DUOX2 Missense_Mutation p.I1417M 0.47 tolerated(0.07) probably_damaging(0.921) TCGA-DK-A6B5-01 15 51350441 51350441 C G TNFAIP8L3 Silent p.V172V 0.57 TCGA-DK-A6B5-01 15 58357784 58357784 G A ALDH1A2 Missense_Mutation p.S22L 0.72 deleterious_low_confidence(0.02) benign(0.032) TCGA-DK-A6B5-01 15 68504082 68504082 G A CLN6 Silent p.F139F 0.28 TCGA-DK-A6B5-01 16 15225340 15225340 A G RP11-1186N24.5 RNA 0.30 TCGA-DK-A6B5-01 16 27492457 27492457 G A GTF3C1 Missense_Mutation p.S1380L 0.33 deleterious(0) probably_damaging(0.987) TCGA-DK-A6B5-01 16 28950000 28950000 C A CD19 Missense_Mutation p.S498Y 0.28 deleterious(0) probably_damaging(0.983) TCGA-DK-A6B5-01 16 30435775 30435775 C G DCTPP1 Missense_Mutation p.D98H 0.31 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 16 57261362 57261362 G C RSPRY1 Missense_Mutation p.E424Q 0.07 tolerated(0.13) probably_damaging(0.932) TCGA-DK-A6B5-01 16 597450 597450 C T CAPN15 Silent p.L204L 0.53 TCGA-DK-A6B5-01 16 89620323 89620323 C T SPG7 Silent p.I686I 0.34 TCGA-DK-A6B5-01 17 18219839 18219839 C A SMCR8 Missense_Mutation p.H246N 0.50 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B5-01 17 25749230 25749230 C T TBC1D3P5 RNA 0.23 TCGA-DK-A6B5-01 17 26913502 26913502 G A SPAG5 Nonsense_Mutation p.Q485* 0.37 TCGA-DK-A6B5-01 17 39642680 39642680 C T KRT36 Missense_Mutation p.R451K 0.26 tolerated(0.91) benign(0.003) TCGA-DK-A6B5-01 17 39684503 39684503 G A KRT19 5'UTR 0.35 TCGA-DK-A6B5-01 17 39767396 39767396 C A KRT16 Silent p.L286L 0.25 TCGA-DK-A6B5-01 17 42113512 42113512 C G LSM12 3'UTR 0.12 TCGA-DK-A6B5-01 17 45730155 45730155 G C KPNB1 Missense_Mutation p.L65F 0.18 deleterious(0.03) probably_damaging(0.91) TCGA-DK-A6B5-01 17 46620913 46620913 C T HOXB2 Missense_Mutation p.M196I 0.34 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B5-01 17 56051830 56051830 C G VEZF1 3'UTR 0.35 TCGA-DK-A6B5-01 17 58258810 58258810 C T USP32 Missense_Mutation p.E1475K 0.43 tolerated_low_confidence(0.42) benign(0.213) TCGA-DK-A6B5-01 17 62291135 62291135 G T TEX2 Missense_Mutation p.P148H 0.32 tolerated(0.08) probably_damaging(1) TCGA-DK-A6B5-01 17 66925772 66925772 G C ABCA8 Missense_Mutation p.S290C 0.45 tolerated(0.06) benign(0.224) TCGA-DK-A6B5-01 17 76047033 76047033 G A TNRC6C Nonsense_Mutation p.W630* 0.26 TCGA-DK-A6B5-01 18 47812565 47812565 C T CXXC1 Missense_Mutation p.E96K 0.66 tolerated(0.15) benign(0.111) TCGA-DK-A6B5-01 19 12502667 12502667 C T ZNF799 Missense_Mutation p.G182E 0.60 tolerated(0.24) possibly_damaging(0.474) TCGA-DK-A6B5-01 19 17000944 17000944 G T F2RL3 Missense_Mutation p.D224Y 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-DK-A6B5-01 19 17000945 17000945 A T F2RL3 Missense_Mutation p.D224V 0.24 deleterious(0) possibly_damaging(0.875) TCGA-DK-A6B5-01 19 18900094 18900094 G T COMP Missense_Mutation p.P135T 0.43 deleterious(0.05) probably_damaging(1) TCGA-DK-A6B5-01 19 18971668 18971668 G T UPF1 Silent p.T778T 0.15 TCGA-DK-A6B5-01 19 37117254 37117254 G C ZNF382 Missense_Mutation p.R152T 0.33 tolerated(0.27) benign(0.003) TCGA-DK-A6B5-01 19 40886890 40886890 G A HIPK4 Silent p.I336I 0.42 TCGA-DK-A6B5-01 19 49148881 49148881 A C CA11 Silent p.A3A 0.33 TCGA-DK-A6B5-01 19 50905112 50905112 G A POLD1 Missense_Mutation p.D132N 0.35 tolerated(0.1) benign(0.035) TCGA-DK-A6B5-01 19 51447041 51447041 C T KLK5 Missense_Mutation p.G243D 0.28 deleterious(0) probably_damaging(0.994) TCGA-DK-A6B5-01 19 51582112 51582112 A G KLK14 Missense_Mutation p.V204A 0.04 deleterious(0.01) benign(0.259) TCGA-DK-A6B5-01 19 52003434 52003434 G C SIGLEC12 Missense_Mutation p.S183C 0.32 tolerated(0.08) probably_damaging(0.93) TCGA-DK-A6B5-01 19 52090802 52090802 C G ZNF175 Silent p.L406L 0.32 TCGA-DK-A6B5-01 19 53432001 53432001 G T ZNF321P 3'UTR 0.22 TCGA-DK-A6B5-01 19 58231810 58231810 G A ZNF671 3'UTR 0.25 TCGA-DK-A6B5-01 1 109446807 109446807 C G GPSM2 Missense_Mutation p.L375V 0.30 tolerated(0.15) benign(0.142) TCGA-DK-A6B5-01 1 14109018 14109018 C T PRDM2 Silent p.S1576S 0.40 TCGA-DK-A6B5-01 1 150936720 150936720 C A SETDB1 Intron 0.43 TCGA-DK-A6B5-01 1 159912784 159912784 G C IGSF9 Silent p.L72L 0.32 TCGA-DK-A6B5-01 1 161993221 161993221 G A OLFML2B 5'UTR 0.33 TCGA-DK-A6B5-01 1 203138038 203138038 G C MYBPH Silent p.V471V 0.35 TCGA-DK-A6B5-01 1 205632304 205632304 G A SLC45A3 Silent p.L205L 0.49 TCGA-DK-A6B5-01 1 21143957 21143957 C G EIF4G3 Missense_Mutation p.E1431D 0.30 tolerated(0.07) benign(0.001) TCGA-DK-A6B5-01 1 236918402 236918402 C G ACTN2 Missense_Mutation p.I686M 0.03 tolerated(0.25) possibly_damaging(0.759) TCGA-DK-A6B5-01 1 237965174 237965174 G A RYR2 Silent p.V4703V 0.45 TCGA-DK-A6B5-01 1 27057647 27057647 C G ARID1A Missense_Mutation p.P452R 0.33 benign(0.001) TCGA-DK-A6B5-01 1 27057727 27057727 C T ARID1A Nonsense_Mutation p.Q479* 0.32 TCGA-DK-A6B5-01 1 33945141 33945141 C T ZSCAN20 Silent p.I84I 0.43 TCGA-DK-A6B5-01 1 39823306 39823306 G A MACF1 Missense_Mutation p.R1833Q 0.35 benign(0.001) TCGA-DK-A6B5-01 1 43778094 43778094 C T TIE1 Silent p.R583R 0.46 TCGA-DK-A6B5-01 1 44423127 44423127 C G IPO13 Silent p.V482V 0.30 TCGA-DK-A6B5-01 1 45266608 45266608 C T PLK3 Nonsense_Mutation p.Q103* 0.41 TCGA-DK-A6B5-01 20 31678559 31678559 C A BPIFB4 Missense_Mutation p.S366Y 0.48 deleterious(0.01) possibly_damaging(0.519) TCGA-DK-A6B5-01 20 39802161 39802161 G C PLCG1 Missense_Mutation p.K1127N 0.43 deleterious(0) probably_damaging(0.948) TCGA-DK-A6B5-01 20 49508950 49508950 C A ADNP Missense_Mutation p.R767S 0.27 deleterious(0) probably_damaging(0.927) TCGA-DK-A6B5-01 21 41648035 41648035 A G DSCAM Missense_Mutation p.L782P 0.26 deleterious(0.02) benign(0.248) TCGA-DK-A6B5-01 21 43319450 43319450 C T C2CD2 Missense_Mutation p.D528N 0.39 tolerated(0.07) benign(0.01) TCGA-DK-A6B5-01 2 103274330 103274330 C T SLC9A2 Silent p.L199L 0.38 TCGA-DK-A6B5-01 2 105473058 105473058 G C POU3F3 Missense_Mutation p.E364Q 0.27 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 2 127953005 127953005 C G CYP27C1 Missense_Mutation p.E209Q 0.38 deleterious(0.04) benign(0.15) TCGA-DK-A6B5-01 2 131521471 131521471 C G AMER3 Missense_Mutation p.S609C 0.33 tolerated(0.07) benign(0.016) TCGA-DK-A6B5-01 2 136736892 136736892 C A DARS Missense_Mutation p.D57Y 0.27 deleterious(0) possibly_damaging(0.615) TCGA-DK-A6B5-01 2 43735858 43735858 T G THADA Missense_Mutation p.I1146L 0.48 deleterious(0.01) benign(0.206) TCGA-DK-A6B5-01 2 62066724 62066724 A T FAM161A Missense_Mutation p.I472N 0.33 deleterious(0.03) benign(0.063) TCGA-DK-A6B5-01 2 71058153 71058153 C T CD207 3'UTR 0.43 TCGA-DK-A6B5-01 2 86346056 86346056 G C PTCD3 Missense_Mutation p.E143Q 0.33 tolerated(0.07) possibly_damaging(0.677) TCGA-DK-A6B5-01 2 96906262 96906262 G A STARD7-AS1 RNA 0.36 TCGA-DK-A6B5-01 3 118937615 118937615 G A B4GALT4 Missense_Mutation p.R227C 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B5-01 3 119112388 119112388 C G ARHGAP31 Nonsense_Mutation p.S319* 0.46 TCGA-DK-A6B5-01 3 139085554 139085554 C G COPB2 Missense_Mutation p.L580F 0.26 tolerated(0.36) probably_damaging(0.978) TCGA-DK-A6B5-01 3 15616531 15616531 G C HACL1 Missense_Mutation p.H288D 0.28 deleterious(0) benign(0.345) TCGA-DK-A6B5-01 3 16312480 16312480 G A OXNAD1 Missense_Mutation p.M7I 0.24 tolerated_low_confidence(0.37) benign(0) TCGA-DK-A6B5-01 3 16313191 16313191 G A OXNAD1 Missense_Mutation p.D49N 0.19 deleterious(0) probably_damaging(0.992) TCGA-DK-A6B5-01 3 17279744 17279744 G A TBC1D5 Missense_Mutation p.S500L 0.58 tolerated(0.32) benign(0) TCGA-DK-A6B5-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.56 deleterious(0.04) probably_damaging(0.96) TCGA-DK-A6B5-01 3 185252791 185252791 G T LIPH Nonsense_Mutation p.S60* 0.42 TCGA-DK-A6B5-01 3 193042721 193042721 G C ATP13A5 Missense_Mutation p.L536V 0.03 deleterious(0) probably_damaging(0.936) TCGA-DK-A6B5-01 3 89390197 89390197 G A EPHA3 Missense_Mutation p.D316N 0.31 deleterious(0.02) probably_damaging(0.993) TCGA-DK-A6B5-01 3 9487367 9487367 A G SETD5 Silent p.P489P 0.07 TCGA-DK-A6B5-01 3 97686380 97686380 T C MINA Missense_Mutation p.K20E 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-A6B5-01 3 9787327 9787327 G A BRPF1 Missense_Mutation p.E1047K 0.11 tolerated(0.48) possibly_damaging(0.832) TCGA-DK-A6B5-01 4 115997802 115997802 C T NDST4 Missense_Mutation p.V131I 0.64 tolerated(1) benign(0.003) TCGA-DK-A6B5-01 4 96761281 96761281 C G PDHA2 5'UTR 0.56 TCGA-DK-A6B5-01 5 125952986 125952986 C G PHAX Silent p.L292L 0.62 TCGA-DK-A6B5-01 5 131973826 131973826 G C RAD50 Missense_Mutation p.D1177H 0.66 tolerated(0.11) possibly_damaging(0.903) TCGA-DK-A6B5-01 5 32090976 32090976 C T PDZD2 Silent p.P2474P 0.53 TCGA-DK-A6B5-01 5 36241623 36241623 G T NADK2 Nonsense_Mutation p.S93* 0.55 TCGA-DK-A6B5-01 5 80550235 80550235 C T CKMT2 Silent p.D124D 0.55 TCGA-DK-A6B5-01 5 82837211 82837211 G C VCAN Missense_Mutation p.D2797H 0.59 tolerated(0.26) benign(0.009) TCGA-DK-A6B5-01 6 158850822 158850822 G A TULP4 Missense_Mutation p.D146N 0.56 deleterious(0.01) benign(0.006) TCGA-DK-A6B5-01 6 26022123 26022123 T C HIST1H4A Missense_Mutation p.Y73H 0.36 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B5-01 6 26158445 26158445 G A HIST1H2BD Silent p.K16K 0.33 TCGA-DK-A6B5-01 6 27100491 27100491 C G HIST1H2BJ Missense_Mutation p.K13N 0.37 deleterious_low_confidence(0.02) benign(0.067) TCGA-DK-A6B5-01 6 30892159 30892159 C T VARS2 Missense_Mutation p.S862L 0.39 tolerated(0.11) benign(0.003) TCGA-DK-A6B5-01 6 31779520 31779520 C T HSPA1L Missense_Mutation p.G77D 0.36 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-DK-A6B5-01 6 33170070 33170070 G C SLC39A7 Missense_Mutation p.W222S 0.38 deleterious(0.05) possibly_damaging(0.824) TCGA-DK-A6B5-01 6 39835462 39835462 G C DAAM2 Missense_Mutation p.S202T 0.36 deleterious(0) benign(0.257) TCGA-DK-A6B5-01 6 42974302 42974302 C T PPP2R5D Silent p.L69L 0.31 TCGA-DK-A6B5-01 6 51720706 51720706 G T PKHD1 Silent p.I2632I 0.34 TCGA-DK-A6B5-01 6 54804532 54804532 C G FAM83B Missense_Mutation p.L255V 0.40 deleterious(0) benign(0.397) TCGA-DK-A6B5-01 6 88317502 88317502 C T ORC3 Missense_Mutation p.S180L 0.57 deleterious(0) possibly_damaging(0.905) TCGA-DK-A6B5-01 7 100212901 100212901 C T MOSPD3 3'UTR 0.62 TCGA-DK-A6B5-01 7 113558541 113558541 C T PPP1R3A Missense_Mutation p.D171N 0.40 deleterious(0) probably_damaging(1) TCGA-DK-A6B5-01 7 122114542 122114542 C G CADPS2 Missense_Mutation p.D631H 0.34 deleterious(0) possibly_damaging(0.695) TCGA-DK-A6B5-01 7 127031557 127031557 C T ZNF800 Missense_Mutation p.E19K 0.32 tolerated(0.18) benign(0.041) TCGA-DK-A6B5-01 7 133884047 133884047 G C LRGUK Missense_Mutation p.E541Q 0.37 tolerated(0.07) probably_damaging(0.998) TCGA-DK-A6B5-01 7 134620517 134620517 G T CALD1 Splice_Site p.X462_splice 0.50 TCGA-DK-A6B5-01 7 39125506 39125506 G A POU6F2 Missense_Mutation p.R22Q 0.73 deleterious_low_confidence(0) benign(0.103) TCGA-DK-A6B5-01 7 45931564 45931564 G A IGFBP1 Missense_Mutation p.E185K 0.69 tolerated(0.11) possibly_damaging(0.665) TCGA-DK-A6B5-01 7 98558965 98558965 C G TRRAP Missense_Mutation p.P2184A 0.37 benign(0.306) TCGA-DK-A6B5-01 7 99247741 99247741 G C CYP3A5 Missense_Mutation p.I456M 0.30 deleterious(0) possibly_damaging(0.492) TCGA-DK-A6B5-01 8 41789950 41789950 G A KAT6A Missense_Mutation p.P1930S 0.67 unknown(0) TCGA-DK-A6B5-01 8 42023181 42023181 C A AP3M2 Intron 0.72 TCGA-DK-A6B5-01 9 102713545 102713545 G A STX17 Silent p.L131L 0.59 TCGA-DK-A6B5-01 9 117791727 117791727 C G TNC Silent p.L2027L 0.67 TCGA-DK-A6B5-01 9 131362391 131362391 G A SPTAN1 Nonsense_Mutation p.W1192* 0.47 TCGA-DK-A6B5-01 9 35738269 35738269 G A GBA2 Silent p.L719L 0.08 TCGA-DK-A6B5-01 9 841892 841892 C G DMRT1 Missense_Mutation p.H18Q 0.40 deleterious_low_confidence(0.04) benign(0.012) TCGA-DK-A6B5-01 X 106069397 106069397 T C TBC1D8B Missense_Mutation p.I322T 0.15 tolerated(0.55) benign(0.012) TCGA-DK-A6B5-01 X 107224421 107224421 G A TEX13B Silent p.L276L 0.77 TCGA-DK-A6B5-01 X 119389325 119389325 G A ZBTB33 3'UTR 0.68 TCGA-DK-A6B5-01 X 129149758 129149758 C G BCORL1 Missense_Mutation p.P1004A 0.53 benign(0) TCGA-DK-A6B5-01 X 135574235 135574235 T G BRS3 Missense_Mutation p.Y301D 0.09 tolerated(0.56) benign(0.243) TCGA-DK-A6B5-01 X 152720509 152720509 G A HAUS7 Intron 0.75 TCGA-DK-A6B5-01 X 26213115 26213115 C T MAGEB6 Silent p.P384P 0.77 TCGA-DK-A6B5-01 X 44942789 44942790 - TA KDM6A Frame_Shift_Ins p.H1124Yfs*7 0.44 TCGA-DK-A6B5-01 X 54496795 54496795 G A FGD1 Missense_Mutation p.P252L 0.62 tolerated(0.09) possibly_damaging(0.713) TCGA-DK-A6B5-01 Y 2847293 2847293 C T ZFY Silent p.H555H 0.16 TCGA-DK-A6B5-01 Y 4968404 4968404 G T PCDH11Y Missense_Mutation p.D929Y 0.09 deleterious(0.02) possibly_damaging(0.709) TCGA-DK-A6B5-01 Y 4968692 4968692 G A PCDH11Y Missense_Mutation p.D1025N 0.08 tolerated(0.28) benign(0.273) TCGA-DK-A6B5-01 Y 4968709 4968709 G T PCDH11Y Silent p.V1030V 0.07 TCGA-DK-A6B6-01 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.54 deleterious(0.02) probably_damaging(0.984) TCGA-DK-A6B6-01 10 104240641 104240641 G A ACTR1A Silent p.S370S 0.50 TCGA-DK-A6B6-01 10 104389929 104389929 C T SUFU 3'UTR 0.53 TCGA-DK-A6B6-01 10 12226948 12226948 G A NUDT5 Missense_Mutation p.S24L 0.31 tolerated(0.47) benign(0.002) TCGA-DK-A6B6-01 10 127512234 127512234 T C BCCIP Silent p.D36D 0.57 TCGA-DK-A6B6-01 10 128796359 128796359 C G DOCK1 Missense_Mutation p.Q205E 0.52 tolerated(0.85) benign(0.042) TCGA-DK-A6B6-01 10 128923778 128923778 C T DOCK1 Silent p.L867L 0.67 TCGA-DK-A6B6-01 10 129901806 129901806 C T MKI67 Silent p.L2766L 0.51 TCGA-DK-A6B6-01 10 135053664 135053664 G C VENTX Missense_Mutation p.E211Q 0.58 tolerated(0.36) benign(0.063) TCGA-DK-A6B6-01 10 17277884 17277884 G A VIM Silent p.L423L 0.39 TCGA-DK-A6B6-01 10 21097558 21097558 G C NEBL Missense_Mutation p.S881C 0.24 deleterious(0) probably_damaging(0.994) TCGA-DK-A6B6-01 10 27408250 27408250 C G YME1L1 Missense_Mutation p.E571Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-DK-A6B6-01 10 3174631 3174631 C T PFKP Silent p.L636L 0.31 TCGA-DK-A6B6-01 10 31812998 31812998 C T ZEB1 Silent p.F914F 0.32 TCGA-DK-A6B6-01 10 32109375 32109375 G A ARHGAP12 Silent p.L524L 0.42 TCGA-DK-A6B6-01 10 33165320 33165320 G C C10ORF68 Nonstop_Mutation p.*629Sext*2 0.35 TCGA-DK-A6B6-01 10 34558670 34558670 G A PARD3 Nonsense_Mutation p.Q1115* 0.31 TCGA-DK-A6B6-01 10 356019 356019 G A DIP2C Missense_Mutation p.P1313L 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 10 43088106 43088106 G A ZNF33B Silent p.L764L 0.30 TCGA-DK-A6B6-01 10 43133946 43133946 C T ZNF33B 5'UTR 0.45 TCGA-DK-A6B6-01 10 43292867 43292867 C T BMS1 Intron 0.32 TCGA-DK-A6B6-01 10 45499096 45499096 C T ZNF22 Nonsense_Mutation p.Q94* 0.34 TCGA-DK-A6B6-01 10 46261181 46261181 C T FAM21C Nonsense_Mutation p.Q598* 0.35 TCGA-DK-A6B6-01 10 50574315 50574316 GC A DRGX Frame_Shift_Del p.A218Sfs*? 0.25 TCGA-DK-A6B6-01 10 51749101 51749101 C T AGAP6 Missense_Mutation p.S86L 0.27 deleterious_low_confidence(0) benign(0.002) TCGA-DK-A6B6-01 10 5415749 5415749 C T UCN3 Silent p.L22L 0.37 TCGA-DK-A6B6-01 10 62545481 62545481 T C CDK1 Missense_Mutation p.M85T 0.30 deleterious(0.03) possibly_damaging(0.833) TCGA-DK-A6B6-01 10 64159308 64159308 G A ZNF365 Intron 0.60 TCGA-DK-A6B6-01 10 64974630 64974630 G A JMJD1C Missense_Mutation p.P433S 0.18 tolerated_low_confidence(0.15) benign(0.002) TCGA-DK-A6B6-01 10 69882049 69882049 G A MYPN Missense_Mutation p.R285Q 0.40 tolerated(0.08) possibly_damaging(0.453) TCGA-DK-A6B6-01 10 72636307 72636307 C T SGPL1 Silent p.F485F 0.47 TCGA-DK-A6B6-01 10 74114728 74114728 C T DNAJB12 Silent p.A10A 0.50 TCGA-DK-A6B6-01 10 75006494 75006494 G A DNAJC9 Silent p.L91L 0.38 TCGA-DK-A6B6-01 10 75529189 75529189 G A SEC24C Missense_Mutation p.D837N 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-DK-A6B6-01 10 75556903 75556903 C T ZSWIM8 Missense_Mutation p.P1103S 0.55 tolerated(0.13) possibly_damaging(0.579) TCGA-DK-A6B6-01 10 7817736 7817736 G A KIN Silent p.S195S 0.20 TCGA-DK-A6B6-01 10 79686097 79686097 A T DLG5 Nonsense_Mutation p.L61* 0.55 TCGA-DK-A6B6-01 10 81060560 81060560 C T ZMIZ1 Missense_Mutation p.S627L 0.53 benign(0.306) TCGA-DK-A6B6-01 10 88818908 88818908 G A GLUD1 Silent p.L467L 0.45 TCGA-DK-A6B6-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.17 TCGA-DK-A6B6-01 10 98744270 98744270 C T C10orf12 Silent p.I1041I 0.49 TCGA-DK-A6B6-01 10 99437765 99437765 G A AVPI1 Missense_Mutation p.S102F 0.62 deleterious(0.03) benign(0.01) TCGA-DK-A6B6-01 11 101833705 101833705 C T KIAA1377 Missense_Mutation p.H647Y 0.57 tolerated(0.23) benign(0.056) TCGA-DK-A6B6-01 11 101852653 101852653 G A KIAA1377 Missense_Mutation p.E998K 0.32 deleterious(0.02) probably_damaging(0.981) TCGA-DK-A6B6-01 11 102980456 102980456 C G DYNC2H1 Silent p.L51L 0.42 TCGA-DK-A6B6-01 11 10327360 10327360 C T ADM Intron 0.26 TCGA-DK-A6B6-01 11 1097901 1097901 C T MUC2 Nonsense_Mutation p.Q2332* 0.41 TCGA-DK-A6B6-01 11 1099208 1099208 C T MUC2 Intron 0.15 TCGA-DK-A6B6-01 11 111750175 111750175 G A C11orf1 5'UTR 0.48 TCGA-DK-A6B6-01 11 113078589 113078589 G C NCAM1 Missense_Mutation p.E320Q 0.18 deleterious(0.02) benign(0.037) TCGA-DK-A6B6-01 11 113650715 113650715 C T CLDN25 Silent p.A66A 0.47 TCGA-DK-A6B6-01 11 117076811 117076811 C G PCSK7 Missense_Mutation p.E754Q 0.33 tolerated_low_confidence(0.33) benign(0.014) TCGA-DK-A6B6-01 11 12241929 12241929 C T MICAL2 Missense_Mutation p.S377L 0.35 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B6-01 11 122930371 122930371 G A HSPA8 Silent p.F310F 0.35 TCGA-DK-A6B6-01 11 128846482 128846482 G A ARHGAP32 Missense_Mutation p.L710F 0.45 deleterious(0) probably_damaging(0.921) TCGA-DK-A6B6-01 11 12958691 12958691 C G TEAD1 Silent p.L401L 0.41 TCGA-DK-A6B6-01 11 13407235 13407235 G A ARNTL Splice_Site p.X539_splice 0.24 TCGA-DK-A6B6-01 11 17124285 17124285 G A PIK3C2A Nonsense_Mutation p.R1259* 0.30 TCGA-DK-A6B6-01 11 17143784 17143784 C T PIK3C2A Missense_Mutation p.D870N 0.29 tolerated(0.63) benign(0.053) TCGA-DK-A6B6-01 11 17548813 17548813 G A USH1C Silent p.I151I 0.34 TCGA-DK-A6B6-01 11 20066680 20066680 C T NAV2 Silent p.F1145F 0.21 TCGA-DK-A6B6-01 11 2424368 2424368 G A TSSC4 Missense_Mutation p.D169N 0.43 tolerated(0.49) benign(0.016) TCGA-DK-A6B6-01 11 3380466 3380466 G A ZNF195 Missense_Mutation p.S591L 0.21 deleterious(0.03) possibly_damaging(0.879) TCGA-DK-A6B6-01 11 34167637 34167637 G A NAT10 Silent p.K992K 0.41 TCGA-DK-A6B6-01 11 34680485 34680485 C T EHF 3'UTR 0.39 TCGA-DK-A6B6-01 11 3877418 3877418 C T STIM1 5'UTR 0.43 TCGA-DK-A6B6-01 11 40137465 40137465 G A LRRC4C Silent p.L126L 0.38 TCGA-DK-A6B6-01 11 43852428 43852428 C T HSD17B12 Intron 0.35 TCGA-DK-A6B6-01 11 44099468 44099468 C G ACCS Missense_Mutation p.S243C 0.36 tolerated(0.18) possibly_damaging(0.852) TCGA-DK-A6B6-01 11 46916341 46916341 G A LRP4 Missense_Mutation p.R447C 0.31 deleterious(0.04) probably_damaging(0.97) TCGA-DK-A6B6-01 11 47189594 47189594 C G ARFGAP2 Missense_Mutation p.K357N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6B6-01 11 47599018 47599018 C T KBTBD4 Silent p.Q194Q 0.24 TCGA-DK-A6B6-01 11 47605943 47605943 G A NDUFS3 Silent p.L235L 0.19 TCGA-DK-A6B6-01 11 47611502 47611502 G A C1QTNF4 Silent p.L287L 0.29 TCGA-DK-A6B6-01 11 47861946 47861946 G A NUP160 Missense_Mutation p.S170F 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-DK-A6B6-01 11 494697 494697 G A RNH1 Silent p.I460I 0.25 TCGA-DK-A6B6-01 11 5012624 5012624 G C MMP26 Missense_Mutation p.D165H 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 11 55735136 55735136 G C OR10AG1 Missense_Mutation p.F268L 0.31 tolerated(0.05) benign(0.287) TCGA-DK-A6B6-01 11 55735850 55735850 C T OR10AG1 Silent p.L30L 0.39 TCGA-DK-A6B6-01 11 56085917 56085917 G C OR8K3 Missense_Mutation p.M45I 0.25 tolerated_low_confidence(0.29) benign(0.013) TCGA-DK-A6B6-01 11 5625815 5625815 G A TRIM6 Missense_Mutation p.E187K 0.61 deleterious(0.04) probably_damaging(0.924) TCGA-DK-A6B6-01 11 57576803 57576803 C T CTNND1 Missense_Mutation p.S767F 0.41 tolerated(0.07) benign(0.212) TCGA-DK-A6B6-01 11 58919502 58919502 C T FAM111A Missense_Mutation p.H121Y 0.27 deleterious(0.01) possibly_damaging(0.642) TCGA-DK-A6B6-01 11 58978531 58978531 C T MPEG1 Missense_Mutation p.S603N 0.22 tolerated(0.32) benign(0.022) TCGA-DK-A6B6-01 11 5906456 5906456 G A OR52E4 Missense_Mutation p.E312K 0.26 tolerated_low_confidence(0.81) benign(0.001) TCGA-DK-A6B6-01 11 6007880 6007880 G C OR52L1 Missense_Mutation p.S94C 0.53 deleterious(0.01) probably_damaging(0.94) TCGA-DK-A6B6-01 11 60689292 60689292 G C TMEM109 Missense_Mutation p.Q129H 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-DK-A6B6-01 11 60689575 60689575 G C TMEM109 Missense_Mutation p.E224Q 0.27 deleterious(0.01) possibly_damaging(0.679) TCGA-DK-A6B6-01 11 61136216 61136216 G A TMEM138 3'UTR 0.56 TCGA-DK-A6B6-01 11 61165262 61165262 C T TMEM216 Silent p.L82L 0.19 TCGA-DK-A6B6-01 11 615238 615238 G A IRF7 Silent p.F27F 0.17 TCGA-DK-A6B6-01 11 62105447 62105447 G T ASRGL1 5'UTR 0.27 TCGA-DK-A6B6-01 11 62289010 62289010 G C AHNAK Missense_Mutation p.I4293M 0.42 possibly_damaging(0.66) TCGA-DK-A6B6-01 11 62295136 62295136 G A AHNAK Silent p.F2251F 0.39 TCGA-DK-A6B6-01 11 62358934 62358934 G A TUT1 Silent p.V46V 0.41 TCGA-DK-A6B6-01 11 62437356 62437356 G A C11orf48 Nonsense_Mutation p.Q50* 0.18 TCGA-DK-A6B6-01 11 62482748 62482748 G A HNRNPUL2 3'UTR 0.35 TCGA-DK-A6B6-01 11 62652683 62652683 C T SLC3A2 Nonsense_Mutation p.Q387* 0.39 TCGA-DK-A6B6-01 11 62984949 62984949 C G SLC22A25 Missense_Mutation p.E223Q 0.40 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 11 63258376 63258376 G A HRASLS5 Missense_Mutation p.S44L 0.21 tolerated_low_confidence(0.25) benign(0.003) TCGA-DK-A6B6-01 11 63663049 63663049 C T MARK2 Intron 0.22 TCGA-DK-A6B6-01 11 63997170 63997170 C T NUDT22 Intron 0.28 TCGA-DK-A6B6-01 11 64518837 64518837 G A PYGM Silent p.V643V 0.59 TCGA-DK-A6B6-01 11 64695613 64695613 C T PPP2R5B Nonsense_Mutation p.Q192* 0.44 TCGA-DK-A6B6-01 11 64878010 64878010 G C VPS51 Missense_Mutation p.K645N 0.25 deleterious(0) possibly_damaging(0.475) TCGA-DK-A6B6-01 11 65270964 65270974 TGAAGGCTCTA - MALAT1 RNA 0.36 TCGA-DK-A6B6-01 11 66100827 66100827 C T RIN1 Missense_Mutation p.G593S 0.30 tolerated(0.46) benign(0.018) TCGA-DK-A6B6-01 11 66102614 66102614 C A RIN1 Missense_Mutation p.G219V 0.45 deleterious(0.01) possibly_damaging(0.839) TCGA-DK-A6B6-01 11 66108686 66108686 G A BRMS1 Nonsense_Mutation p.Q117* 0.41 TCGA-DK-A6B6-01 11 66612482 66612482 C T RCE1 Silent p.F198F 0.24 TCGA-DK-A6B6-01 11 67046668 67046668 C T ADRBK1 Intron 0.38 TCGA-DK-A6B6-01 11 67079425 67079425 C T SSH3 3'UTR 0.32 TCGA-DK-A6B6-01 11 67816393 67816393 G C TCIRG1 Missense_Mutation p.K534N 0.33 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 11 69462886 69462886 C T CCND1 Silent p.L233L 0.75 TCGA-DK-A6B6-01 11 70052340 70052340 G A FADD Missense_Mutation p.E130K 0.06 tolerated(0.06) probably_damaging(0.987) TCGA-DK-A6B6-01 11 7064321 7064321 C G NLRP14 Nonsense_Mutation p.S355* 0.22 TCGA-DK-A6B6-01 11 71850628 71850628 C T FOLR3 Intron 0.53 TCGA-DK-A6B6-01 11 72537613 72537613 G T ATG16L2 Missense_Mutation p.K408N 0.55 deleterious(0.01) possibly_damaging(0.694) TCGA-DK-A6B6-01 11 76670067 76670067 G A ACER3 Missense_Mutation p.E87K 0.41 deleterious(0.01) possibly_damaging(0.74) TCGA-DK-A6B6-01 11 810264 810264 T C RPLP2 Silent p.A10A 0.29 TCGA-DK-A6B6-01 11 884097 884097 G A CHID1 Silent p.L283L 0.24 TCGA-DK-A6B6-01 11 9069001 9069001 G A SCUBE2 Missense_Mutation p.S635L 0.37 deleterious(0.01) benign(0.234) TCGA-DK-A6B6-01 11 9431602 9431602 C T IPO7 Missense_Mutation p.L150F 0.46 deleterious(0.02) benign(0.078) TCGA-DK-A6B6-01 11 94918476 94918476 C T SESN3 Missense_Mutation p.D236N 0.53 deleterious(0.03) possibly_damaging(0.803) TCGA-DK-A6B6-01 12 100751129 100751129 G A SLC17A8 5'UTR 0.29 TCGA-DK-A6B6-01 12 10762497 10762517 ATAATTCTCTTCAGTTCTTCC - MAGOHB In_Frame_Del p.M59_I65del 0.30 TCGA-DK-A6B6-01 12 108106062 108106062 C T PWP1 3'UTR 0.31 TCGA-DK-A6B6-01 12 10954191 10954191 C A TAS2R7 3'UTR 0.30 TCGA-DK-A6B6-01 12 110429501 110429501 C G GIT2 Silent p.R39R 0.22 TCGA-DK-A6B6-01 12 110968361 110968361 C T RAD9B Missense_Mutation p.S386F 0.23 tolerated(0.72) probably_damaging(0.939) TCGA-DK-A6B6-01 12 11150347 11150347 G A TAS2R20 Missense_Mutation p.S43L 0.31 tolerated(0.55) benign(0.02) TCGA-DK-A6B6-01 12 113733970 113733970 C G TPCN1 3'UTR 0.36 TCGA-DK-A6B6-01 12 116429065 116429065 G A MED13L Nonsense_Mutation p.Q1232* 0.24 TCGA-DK-A6B6-01 12 117448166 117448166 G C FBXW8 Missense_Mutation p.L426F 0.29 tolerated(0.48) benign(0.015) TCGA-DK-A6B6-01 12 120580708 120580708 G A GCN1L1 Missense_Mutation p.H1845Y 0.33 probably_damaging(0.925) TCGA-DK-A6B6-01 12 120585990 120585990 G C GCN1L1 Missense_Mutation p.I1569M 0.36 probably_damaging(0.997) TCGA-DK-A6B6-01 12 120586011 120586011 G A GCN1L1 Silent p.L1562L 0.32 TCGA-DK-A6B6-01 12 120591103 120591103 G A GCN1L1 Silent p.L1326L 0.37 TCGA-DK-A6B6-01 12 120591172 120591172 G A GCN1L1 Silent p.L1303L 0.32 TCGA-DK-A6B6-01 12 120907260 120907260 G A SRSF9 Silent p.L51L 0.31 TCGA-DK-A6B6-01 12 121017087 121017087 G A POP5 3'UTR 0.24 TCGA-DK-A6B6-01 12 12318083 12318083 C T LRP6 Silent p.E564E 0.33 TCGA-DK-A6B6-01 12 123380580 123380580 G A VPS37B Silent p.F10F 0.41 TCGA-DK-A6B6-01 12 124341674 124341674 C A DNAH10 Missense_Mutation p.F2052L 0.23 probably_damaging(1) TCGA-DK-A6B6-01 12 124497235 124497235 C T ZNF664 Nonsense_Mutation p.Q182* 0.23 TCGA-DK-A6B6-01 12 125396679 125396679 G A UBC Missense_Mutation p.L547F 0.15 deleterious(0.04) probably_damaging(0.983) TCGA-DK-A6B6-01 12 125470711 125470711 C T DHX37 Silent p.K69K 0.32 TCGA-DK-A6B6-01 12 130648022 130648022 G C FZD10 Missense_Mutation p.E179Q 0.18 tolerated(0.45) benign(0.092) TCGA-DK-A6B6-01 12 132476758 132476758 C G EP400 Missense_Mutation p.S907C 0.42 unknown(0) TCGA-DK-A6B6-01 12 133313612 133313612 G A ANKLE2 Missense_Mutation p.S487F 0.45 deleterious(0) probably_damaging(0.955) TCGA-DK-A6B6-01 12 13716782 13716782 C T GRIN2B Silent p.R1130R 0.44 TCGA-DK-A6B6-01 12 14993596 14993596 G A ART4 Silent p.L212L 0.25 TCGA-DK-A6B6-01 12 15803792 15803792 G A EPS8 Nonsense_Mutation p.Q467* 0.34 TCGA-DK-A6B6-01 12 21331609 21331609 C G SLCO1B1 Missense_Mutation p.S194C 0.35 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B6-01 12 25261687 25261687 C G CASC1 Missense_Mutation p.R655T 0.17 deleterious(0) probably_damaging(0.972) TCGA-DK-A6B6-01 12 2742833 2742833 C T CACNA1C Silent p.L1309L 0.29 TCGA-DK-A6B6-01 12 32903720 32903720 G A YARS2 Nonsense_Mutation p.Q346* 0.30 TCGA-DK-A6B6-01 12 38714458 38714458 C T ALG10B Missense_Mutation p.P289S 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A6B6-01 12 46321035 46321035 G A SCAF11 Missense_Mutation p.P817S 0.21 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-DK-A6B6-01 12 48106362 48106362 G C ENDOU Missense_Mutation p.I303M 0.34 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 12 49231129 49231129 G A DDX23 Silent p.L267L 0.29 TCGA-DK-A6B6-01 12 49427633 49427633 G A KMT2D Missense_Mutation p.L3619F 0.47 possibly_damaging(0.829) TCGA-DK-A6B6-01 12 49438623 49438623 C T KMT2D Missense_Mutation p.E1623K 0.30 probably_damaging(0.941) TCGA-DK-A6B6-01 12 50236907 50236907 G A BCDIN3D 5'UTR 0.31 TCGA-DK-A6B6-01 12 53457807 53457807 G A TENC1 3'UTR 0.25 TCGA-DK-A6B6-01 12 53608274 53608274 G A RARG Nonsense_Mutation p.Q198* 0.33 TCGA-DK-A6B6-01 12 54422347 54422347 C T HOXC6 Silent p.L14L 0.36 TCGA-DK-A6B6-01 12 54963353 54963353 C T PDE1B Missense_Mutation p.S145F 0.32 tolerated(0.69) benign(0.146) TCGA-DK-A6B6-01 12 56334743 56334743 G C DGKA Missense_Mutation p.L360F 0.31 tolerated(0.69) benign(0.001) TCGA-DK-A6B6-01 12 56481672 56481672 C T ERBB3 Missense_Mutation p.S236L 0.23 deleterious(0.04) benign(0.352) TCGA-DK-A6B6-01 12 56498363 56498363 C T PA2G4 5'UTR 0.56 TCGA-DK-A6B6-01 12 56868325 56868325 C T GLS2 Intron 0.53 TCGA-DK-A6B6-01 12 57112904 57112904 G A NACA Intron 0.24 TCGA-DK-A6B6-01 12 57850383 57850383 G A INHBE Missense_Mutation p.E269K 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 12 62931484 62931484 C T MON2 Nonsense_Mutation p.Q706* 0.34 TCGA-DK-A6B6-01 12 6575088 6575088 C T VAMP1 Missense_Mutation p.D70N 0.26 deleterious(0) probably_damaging(0.988) TCGA-DK-A6B6-01 12 6575146 6575146 C G VAMP1 Silent p.V50V 0.29 TCGA-DK-A6B6-01 12 6647389 6647389 C T GAPDH 3'UTR 0.27 TCGA-DK-A6B6-01 12 70704766 70704766 C T CNOT2 Missense_Mutation p.S47F 0.25 deleterious_low_confidence(0.01) benign(0.365) TCGA-DK-A6B6-01 12 7076865 7076865 C T PHB2 Missense_Mutation p.E229K 0.38 deleterious(0.01) probably_damaging(0.975) TCGA-DK-A6B6-01 12 72026081 72026081 G A ZFC3H1 Nonsense_Mutation p.Q1011* 0.31 TCGA-DK-A6B6-01 12 72058206 72058206 G C THAP2 5'UTR 0.18 TCGA-DK-A6B6-01 12 72289754 72289754 C G TBC1D15 Missense_Mutation p.Q312E 0.41 tolerated(1) benign(0.027) TCGA-DK-A6B6-01 12 7310217 7310217 C T CLSTN3 Missense_Mutation p.S887F 0.29 deleterious(0.04) benign(0.308) TCGA-DK-A6B6-01 12 7894074 7894074 C A CLEC4C Nonsense_Mutation p.E60* 0.41 TCGA-DK-A6B6-01 12 8245310 8245315 AAGAAA T NECAP1 Frame_Shift_Del p.Q141Lfs*6 0.24 TCGA-DK-A6B6-01 12 88584332 88584332 G C TMTC3 Missense_Mutation p.E547Q 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-DK-A6B6-01 12 93793193 93793193 C T NUDT4 3'UTR 0.15 TCGA-DK-A6B6-01 12 99028079 99028079 C G IKBIP Missense_Mutation p.E98Q 0.31 tolerated(0.07) possibly_damaging(0.843) TCGA-DK-A6B6-01 13 25074459 25074459 G A PARP4 Silent p.L132L 0.62 TCGA-DK-A6B6-01 13 25074464 25074464 C G PARP4 Missense_Mutation p.E131Q 0.66 tolerated(0.1) benign(0.044) TCGA-DK-A6B6-01 13 25876001 25876001 C T NUPL1 Silent p.F30F 0.55 TCGA-DK-A6B6-01 13 37524063 37524063 G A ALG5 3'UTR 0.62 TCGA-DK-A6B6-01 13 41705512 41705512 G A KBTBD6 Missense_Mutation p.T379I 0.65 tolerated(0.17) possibly_damaging(0.536) TCGA-DK-A6B6-01 13 41949742 41949742 C T NAA16 3'UTR 0.53 TCGA-DK-A6B6-01 13 42763227 42763227 C T DGKH Missense_Mutation p.S565F 0.65 deleterious(0.03) benign(0.005) TCGA-DK-A6B6-01 13 45827023 45827023 C G GTF2F2 Missense_Mutation p.S135C 0.50 deleterious(0.04) benign(0.078) TCGA-DK-A6B6-01 13 46559534 46559534 G A ZC3H13 Missense_Mutation p.R540C 0.50 probably_damaging(0.997) TCGA-DK-A6B6-01 13 73334757 73334757 G T DIS3 Missense_Mutation p.F901L 0.67 tolerated(0.57) benign(0.004) TCGA-DK-A6B6-01 13 98641342 98641342 G A IPO5 Missense_Mutation p.E149K 0.19 deleterious(0.05) possibly_damaging(0.696) TCGA-DK-A6B6-01 14 100820867 100820867 C G WARS Missense_Mutation p.K153N 0.39 tolerated(0.06) benign(0.018) TCGA-DK-A6B6-01 14 102504909 102504909 C T DYNC1H1 Missense_Mutation p.S3674L 0.31 probably_damaging(0.909) TCGA-DK-A6B6-01 14 102549187 102549187 G A HSP90AA1 Intron 0.25 TCGA-DK-A6B6-01 14 102605690 102605690 G T HSP90AA1 Silent p.R18R 0.26 TCGA-DK-A6B6-01 14 102606455 102606455 C T WDR20 Silent p.L65L 0.23 TCGA-DK-A6B6-01 14 103406202 103406202 G A CDC42BPB Silent p.F1558F 0.32 TCGA-DK-A6B6-01 14 103434682 103434682 C G CDC42BPB Missense_Mutation p.E752Q 0.23 tolerated(0.18) possibly_damaging(0.864) TCGA-DK-A6B6-01 14 103803037 103803037 G T EIF5 Nonsense_Mutation p.E60* 0.34 TCGA-DK-A6B6-01 14 103804699 103804699 G C EIF5 Missense_Mutation p.E159Q 0.31 tolerated(0.24) benign(0.135) TCGA-DK-A6B6-01 14 103804704 103804704 G A EIF5 Silent p.K160K 0.28 TCGA-DK-A6B6-01 14 103804753 103804753 G A EIF5 Missense_Mutation p.E177K 0.33 tolerated(0.6) benign(0.035) TCGA-DK-A6B6-01 14 104639559 104639559 C T KIF26A Missense_Mutation p.P556S 0.35 deleterious(0.01) benign(0.122) TCGA-DK-A6B6-01 14 105420747 105420747 C T AHNAK2 Silent p.Q347Q 0.35 TCGA-DK-A6B6-01 14 21967254 21967254 C T METTL3 Missense_Mutation p.E516K 0.25 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 14 21971663 21971663 G A METTL3 Nonsense_Mutation p.Q126* 0.38 TCGA-DK-A6B6-01 14 22386707 22386707 C G TRAV13-2 Missense_Mutation p.S39C 0.35 tolerated(0.16) benign(0.067) TCGA-DK-A6B6-01 14 22434231 22434231 C T TRAV12-3 Missense_Mutation p.S95F 0.33 tolerated(0.05) possibly_damaging(0.86) TCGA-DK-A6B6-01 14 22434277 22434277 C G TRAV12-3 Silent p.L110L 0.33 TCGA-DK-A6B6-01 14 22600808 22600808 C T TRAV8-7 Silent p.F51F 0.26 TCGA-DK-A6B6-01 14 22675791 22675791 G C TRAV34 Missense_Mutation p.E35Q 0.43 deleterious(0.04) probably_damaging(0.929) TCGA-DK-A6B6-01 14 23391415 23391415 G A PRMT5 Silent p.F577F 0.28 TCGA-DK-A6B6-01 14 23549689 23549689 G A ACIN1 Silent p.S343S 0.29 TCGA-DK-A6B6-01 14 23828631 23828631 G A EFS Silent p.V352V 0.29 TCGA-DK-A6B6-01 14 23855601 23855601 C G MYH6 Missense_Mutation p.E1628Q 0.24 tolerated(0.05) probably_damaging(1) TCGA-DK-A6B6-01 14 23885290 23885290 C G MYH7 Missense_Mutation p.E1626Q 0.07 deleterious(0.04) possibly_damaging(0.872) TCGA-DK-A6B6-01 14 24624860 24624860 C T RNF31 Missense_Mutation p.P818S 0.15 tolerated(0.05) probably_damaging(0.998) TCGA-DK-A6B6-01 14 24675316 24675316 G A TSSK4 Missense_Mutation p.D63N 0.29 tolerated(0.38) benign(0.423) TCGA-DK-A6B6-01 14 24677184 24677184 G A TSSK4 Silent p.Q283Q 0.41 TCGA-DK-A6B6-01 14 39597505 39597505 G C GEMIN2 Missense_Mutation p.E196Q 0.36 deleterious(0.04) probably_damaging(0.961) TCGA-DK-A6B6-01 14 39605698 39605698 C T GEMIN2 3'UTR 0.25 TCGA-DK-A6B6-01 14 44974070 44974070 G A FSCB Silent p.V707V 0.24 TCGA-DK-A6B6-01 14 50360532 50360532 G C ARF6 Missense_Mutation p.K26N 0.20 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-DK-A6B6-01 14 50360571 50360571 G A ARF6 Silent p.V39V 0.22 TCGA-DK-A6B6-01 14 52171523 52171523 C T FRMD6 Missense_Mutation p.S143F 0.34 deleterious(0) possibly_damaging(0.583) TCGA-DK-A6B6-01 14 53180677 53180677 G A PSMC6 Missense_Mutation p.G188R 0.35 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B6-01 14 53224052 53224052 G C STYX Missense_Mutation p.D107H 0.32 deleterious(0) possibly_damaging(0.577) TCGA-DK-A6B6-01 14 55607035 55607035 C T LGALS3 Missense_Mutation p.R129C 0.40 deleterious(0) probably_damaging(0.974) TCGA-DK-A6B6-01 14 57735984 57735984 C T AP5M1 5'UTR 0.33 TCGA-DK-A6B6-01 14 61180839 61180839 G A SIX4 Silent p.F544F 0.31 TCGA-DK-A6B6-01 14 67847384 67847384 C T EIF2S1 Missense_Mutation p.S161F 0.50 deleterious(0) possibly_damaging(0.838) TCGA-DK-A6B6-01 14 69256370 69256370 G C ZFP36L1 Silent p.L299L 0.32 TCGA-DK-A6B6-01 14 69256992 69256992 G T ZFP36L1 Nonsense_Mutation p.S92* 0.28 TCGA-DK-A6B6-01 14 69257116 69257116 G A ZFP36L1 Missense_Mutation p.R51W 0.28 deleterious(0) possibly_damaging(0.735) TCGA-DK-A6B6-01 14 70170135 70170135 G A KIAA0247 Missense_Mutation p.E49K 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6B6-01 14 74425724 74425724 G A COQ6 Silent p.Q221Q 0.30 TCGA-DK-A6B6-01 14 74516525 74516525 G A CCDC176 Missense_Mutation p.E305K 0.22 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 14 75746726 75746726 C T FOS Silent p.F96F 0.35 TCGA-DK-A6B6-01 14 78174278 78174278 G A ALKBH1 Missense_Mutation p.R24W 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 14 78184411 78184411 C T SNW1 3'UTR 0.30 TCGA-DK-A6B6-01 14 80164057 80164057 C G NRXN3 Missense_Mutation p.S861C 0.39 deleterious(0) benign(0.103) TCGA-DK-A6B6-01 14 89083213 89083213 C T EML5 Missense_Mutation p.D1885N 0.37 deleterious(0.03) possibly_damaging(0.878) TCGA-DK-A6B6-01 14 89148330 89148330 G C EML5 Missense_Mutation p.L1010V 0.31 tolerated(0.2) benign(0.438) TCGA-DK-A6B6-01 14 92268634 92268634 G A TC2N Missense_Mutation p.P145S 0.27 tolerated(0.45) benign(0.004) TCGA-DK-A6B6-01 14 94109981 94109981 C T UNC79 Silent p.F1856F 0.26 TCGA-DK-A6B6-01 14 94640771 94640771 C G PPP4R4 5'UTR 0.21 TCGA-DK-A6B6-01 14 96949491 96949491 G C AK7 Missense_Mutation p.E637Q 0.33 tolerated(0.3) benign(0.021) TCGA-DK-A6B6-01 15 100345088 100345088 G A CTD-2054N24.2 5'Flank 0.24 TCGA-DK-A6B6-01 15 101827883 101827883 G A SNRPA1 Missense_Mutation p.L112F 0.18 tolerated(0.11) benign(0.006) TCGA-DK-A6B6-01 15 25213157 25213157 C T SNURF Silent p.F63F 0.06 TCGA-DK-A6B6-01 15 27114392 27114392 G C GABRA5 5'UTR 0.42 TCGA-DK-A6B6-01 15 30010610 30010610 G A TJP1 Missense_Mutation p.P1246S 0.61 tolerated_low_confidence(0.07) benign(0.011) TCGA-DK-A6B6-01 15 40565108 40565108 G A PAK6 Silent p.E466E 0.48 TCGA-DK-A6B6-01 15 40627489 40627489 G A C15orf52 Missense_Mutation p.S492F 0.53 deleterious(0.05) benign(0.032) TCGA-DK-A6B6-01 15 41137013 41137013 C T SPINT1 Silent p.C87C 0.49 TCGA-DK-A6B6-01 15 41165271 41165271 G A RHOV Silent p.F232F 0.49 TCGA-DK-A6B6-01 15 41865997 41865997 G A TYRO3 Missense_Mutation p.E756K 0.47 deleterious(0) possibly_damaging(0.528) TCGA-DK-A6B6-01 15 42717184 42717184 G A ZNF106 Missense_Mutation p.R1657W 0.61 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 15 43317141 43317141 G A UBR1 Silent p.F875F 0.47 TCGA-DK-A6B6-01 15 43621411 43621411 G A LCMT2 Missense_Mutation p.S426L 0.56 deleterious(0.02) probably_damaging(0.917) TCGA-DK-A6B6-01 15 44085187 44085187 G A SERF2 Missense_Mutation p.E8K 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.621) TCGA-DK-A6B6-01 15 45003745 45003745 A C B2M Translation_Start_Site p.M1? 0.46 deleterious(0) possibly_damaging(0.456) TCGA-DK-A6B6-01 15 45782984 45782984 C T SLC30A4 Missense_Mutation p.E212K 0.31 tolerated(0.08) benign(0.05) TCGA-DK-A6B6-01 15 45895295 45895295 C T BLOC1S6 Intron 0.35 TCGA-DK-A6B6-01 15 49926895 49926895 G A DTWD1 Missense_Mutation p.D191N 0.16 tolerated(0.17) benign(0.052) TCGA-DK-A6B6-01 15 50264936 50264936 C G ATP8B4 Missense_Mutation p.K362N 0.18 tolerated(0.08) possibly_damaging(0.501) TCGA-DK-A6B6-01 15 51503070 51503070 C T CYP19A1 Missense_Mutation p.E483K 0.20 deleterious(0) possibly_damaging(0.485) TCGA-DK-A6B6-01 15 52186074 52186074 G C TMOD3 Missense_Mutation p.E187Q 0.53 deleterious(0.01) possibly_damaging(0.462) TCGA-DK-A6B6-01 15 55651928 55651928 G C CCPG1 Missense_Mutation p.I681M 0.22 deleterious(0) probably_damaging(0.923) TCGA-DK-A6B6-01 15 63948526 63948526 C G HERC1 Missense_Mutation p.E3211Q 0.17 benign(0.352) TCGA-DK-A6B6-01 15 63988351 63988351 C A HERC1 Missense_Mutation p.G1698V 0.44 benign(0.021) TCGA-DK-A6B6-01 15 64452363 64452363 G C PPIB Missense_Mutation p.R95G 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 15 65748600 65748600 C T DPP8 Missense_Mutation p.R710Q 0.39 deleterious(0) possibly_damaging(0.507) TCGA-DK-A6B6-01 15 65945133 65945133 G A SLC24A1 Missense_Mutation p.D1013N 0.19 probably_damaging(0.938) TCGA-DK-A6B6-01 15 66615076 66615076 G C DIS3L Missense_Mutation p.E460Q 0.35 tolerated(0.08) benign(0.03) TCGA-DK-A6B6-01 15 67950939 67950939 G A MAP2K5 Missense_Mutation p.R262K 0.19 tolerated(0.51) benign(0.406) TCGA-DK-A6B6-01 15 68582015 68582015 C G FEM1B Missense_Mutation p.L107V 0.20 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B6-01 15 68582890 68582890 G C FEM1B Missense_Mutation p.L398F 0.34 deleterious(0.02) possibly_damaging(0.873) TCGA-DK-A6B6-01 15 69076757 69076757 C T ANP32A Missense_Mutation p.D169N 0.35 tolerated(0.12) unknown(0) TCGA-DK-A6B6-01 15 69076812 69076812 C T ANP32A Silent p.R150R 0.31 TCGA-DK-A6B6-01 15 72699440 72699440 C A TMEM202 Silent p.L167L 0.19 TCGA-DK-A6B6-01 15 73418865 73418865 C G NEO1 Missense_Mutation p.P278A 0.25 deleterious(0.02) possibly_damaging(0.869) TCGA-DK-A6B6-01 15 75501194 75501194 C T C15orf39 Intron 0.15 TCGA-DK-A6B6-01 15 75594859 75594859 C A DNM1P34 RNA 0.19 TCGA-DK-A6B6-01 15 75668153 75668153 C G SIN3A Missense_Mutation p.K1148N 0.23 tolerated(0.45) benign(0.031) TCGA-DK-A6B6-01 15 75809629 75809629 G A PTPN9 Missense_Mutation p.L167F 0.36 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B6-01 15 75932510 75932510 G A IMP3 5'UTR 0.17 TCGA-DK-A6B6-01 15 75968128 75968128 G A CSPG4 Silent p.F2244F 0.28 TCGA-DK-A6B6-01 15 78566603 78566603 C T DNAJA4 Silent p.I190I 0.32 TCGA-DK-A6B6-01 15 79272967 79272967 C T RASGRF1 Silent p.L1179L 0.31 TCGA-DK-A6B6-01 15 79273026 79273026 C T RASGRF1 Missense_Mutation p.D1160N 0.42 deleterious(0.02) possibly_damaging(0.506) TCGA-DK-A6B6-01 15 79356818 79356818 C T RASGRF1 Silent p.L109L 0.38 TCGA-DK-A6B6-01 15 80464516 80464516 G C FAH Missense_Mutation p.R211T 0.44 tolerated(0.32) benign(0.002) TCGA-DK-A6B6-01 15 81295006 81295006 C T MESDC1 Silent p.L132L 0.57 TCGA-DK-A6B6-01 15 82545072 82545072 G A EFTUD1 Silent p.I68I 0.41 TCGA-DK-A6B6-01 15 84651408 84651408 G A ADAMTSL3 Missense_Mutation p.E1010K 0.26 tolerated(0.92) benign(0.009) TCGA-DK-A6B6-01 15 89865068 89865068 C T POLG Missense_Mutation p.E833K 0.27 tolerated(0.16) probably_damaging(0.969) TCGA-DK-A6B6-01 15 90321314 90321314 G A MESP2 Missense_Mutation p.E315K 0.15 deleterious_low_confidence(0) benign(0.307) TCGA-DK-A6B6-01 15 90760693 90760693 C T SEMA4B Silent p.L60L 0.56 TCGA-DK-A6B6-01 15 90997678 90997678 G A IQGAP1 Missense_Mutation p.M502I 0.27 tolerated(0.32) benign(0) TCGA-DK-A6B6-01 15 91169124 91169124 C T CRTC3 Missense_Mutation p.S289F 0.19 deleterious(0) probably_damaging(0.993) TCGA-DK-A6B6-01 15 91424197 91424197 C T FURIN Silent p.T573T 0.38 TCGA-DK-A6B6-01 15 91424800 91424800 C T FURIN Missense_Mutation p.R693W 0.52 deleterious(0.02) benign(0.083) TCGA-DK-A6B6-01 15 91424883 91424883 C A FURIN Silent p.L720L 0.38 TCGA-DK-A6B6-01 16 10525231 10525231 G C ATF7IP2 Missense_Mutation p.D252H 0.19 deleterious(0) benign(0.193) TCGA-DK-A6B6-01 16 11097102 11097102 G A CLEC16A Missense_Mutation p.E415K 0.16 tolerated(0.32) benign(0.019) TCGA-DK-A6B6-01 16 12172724 12172724 C T SNX29 Silent p.L452L 0.25 TCGA-DK-A6B6-01 16 1255117 1255117 G A CACNA1H Missense_Mutation p.E819K 0.33 tolerated(0.07) benign(0.085) TCGA-DK-A6B6-01 16 15023243 15023243 C T RP11-958N24.1 RNA 0.24 TCGA-DK-A6B6-01 16 15163924 15163924 G A RRN3 Intron 0.16 TCGA-DK-A6B6-01 16 15715751 15715751 G A KIAA0430 Silent p.L826L 0.29 TCGA-DK-A6B6-01 16 15820739 15820739 C G MYH11 Missense_Mutation p.R1282P 0.21 probably_damaging(0.927) TCGA-DK-A6B6-01 16 19883977 19883977 C G GPRC5B Missense_Mutation p.G64A 0.23 tolerated(0.64) probably_damaging(0.999) TCGA-DK-A6B6-01 16 2090190 2090190 C A NTHL1 Missense_Mutation p.K253N 0.43 deleterious(0.01) benign(0.068) TCGA-DK-A6B6-01 16 22337394 22337394 C T POLR3E Missense_Mutation p.A554V 0.19 tolerated(0.33) benign(0.003) TCGA-DK-A6B6-01 16 22337527 22337527 C G POLR3E Silent p.L598L 0.39 TCGA-DK-A6B6-01 16 23079209 23079209 G C USP31 3'UTR 0.44 TCGA-DK-A6B6-01 16 23080076 23080076 G A USP31 Missense_Mutation p.S1117L 0.17 tolerated_low_confidence(0.11) benign(0.004) TCGA-DK-A6B6-01 16 23499958 23499958 G A GGA2 Missense_Mutation p.S183F 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-DK-A6B6-01 16 24802526 24802526 G A TNRC6A Missense_Mutation p.D855N 0.36 deleterious(0.02) benign(0.276) TCGA-DK-A6B6-01 16 25143746 25143746 G - LCMT1 Frame_Shift_Del p.V77Sfs*5 0.19 TCGA-DK-A6B6-01 16 27221637 27221637 C T KDM8 Silent p.L103L 0.22 TCGA-DK-A6B6-01 16 2815189 2815189 C T SRRM2 Nonsense_Mutation p.Q1554* 0.26 TCGA-DK-A6B6-01 16 28967613 28967613 C T NFATC2IP Silent p.L267L 0.39 TCGA-DK-A6B6-01 16 29818706 29818706 G C MAZ Missense_Mutation p.K200N 0.24 tolerated(0.07) possibly_damaging(0.895) TCGA-DK-A6B6-01 16 29819018 29819018 G A MAZ Silent p.E304E 0.19 TCGA-DK-A6B6-01 16 30712075 30712075 C A SRCAP 5'UTR 0.44 TCGA-DK-A6B6-01 16 30750002 30750002 C T SRCAP Missense_Mutation p.P2881S 0.43 unknown(0) TCGA-DK-A6B6-01 16 30783276 30783276 C T RNF40 Silent p.F903F 0.16 TCGA-DK-A6B6-01 16 3107033 3107033 G A MMP25 Splice_Site p.X221_splice 0.43 TCGA-DK-A6B6-01 16 31144247 31144247 G C PRSS8 Silent p.V98V 0.44 TCGA-DK-A6B6-01 16 31195546 31195546 C T FUS Nonsense_Mutation p.Q118* 0.36 TCGA-DK-A6B6-01 16 31473663 31473663 C T ARMC5 Silent p.L265L 0.15 TCGA-DK-A6B6-01 16 31503346 31503346 G A C16orf58 Silent p.F431F 0.11 TCGA-DK-A6B6-01 16 3640393 3640393 C T SLX4 Silent p.Q1082Q 0.23 TCGA-DK-A6B6-01 16 4322723 4322723 G A TFAP4 Nonsense_Mutation p.Q9* 0.18 TCGA-DK-A6B6-01 16 46726423 46726423 G A ORC6 Missense_Mutation p.E109K 0.20 deleterious(0.03) benign(0.103) TCGA-DK-A6B6-01 16 4755175 4755175 G A ANKS3 Silent p.V263V 0.23 TCGA-DK-A6B6-01 16 4815843 4815843 G A ZNF500 Missense_Mutation p.P46L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6B6-01 16 48395835 48395835 C T SIAH1 Missense_Mutation p.D200N 0.15 tolerated(0.24) benign(0.168) TCGA-DK-A6B6-01 16 4903131 4903131 C T UBN1 Silent p.I71I 0.24 TCGA-DK-A6B6-01 16 4924782 4924782 C T UBN1 Missense_Mutation p.H791Y 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.542) TCGA-DK-A6B6-01 16 5140234 5140234 C T FAM86A Missense_Mutation p.R198Q 0.31 tolerated(0.34) benign(0.017) TCGA-DK-A6B6-01 16 58559259 58559259 G A CNOT1 Missense_Mutation p.S2203F 0.36 deleterious(0) possibly_damaging(0.544) TCGA-DK-A6B6-01 16 58608568 58608568 G A CNOT1 Nonsense_Mutation p.Q642* 0.20 TCGA-DK-A6B6-01 16 67233098 67233098 G A ELMO3 Missense_Mutation p.E10K 0.16 deleterious_low_confidence(0) benign(0.002) TCGA-DK-A6B6-01 16 67237768 67237768 C T ELMO3 Silent p.I770I 0.46 TCGA-DK-A6B6-01 16 67470217 67470217 G T HSD11B2 Missense_Mutation p.D244Y 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-DK-A6B6-01 16 67919692 67919692 C T NRN1L Silent p.F49F 0.05 TCGA-DK-A6B6-01 16 67980504 67980504 C T SLC12A4 Silent p.V760V 0.11 TCGA-DK-A6B6-01 16 69727328 69727328 C G NFAT5 Missense_Mutation p.F1200L 0.28 probably_damaging(0.977) TCGA-DK-A6B6-01 16 70405977 70405977 C T DDX19A 3'UTR 0.39 TCGA-DK-A6B6-01 16 70841605 70841605 C T HYDIN Missense_Mutation p.E5082K 0.17 possibly_damaging(0.801) TCGA-DK-A6B6-01 16 71724592 71724592 G A PHLPP2 Missense_Mutation p.R147C 0.20 deleterious(0.04) benign(0.167) TCGA-DK-A6B6-01 16 72107850 72107850 C G HPR Nonsense_Mutation p.S22* 0.15 TCGA-DK-A6B6-01 16 734745 734745 C T WDR24 Missense_Mutation p.E788K 0.19 deleterious(0) possibly_damaging(0.8) TCGA-DK-A6B6-01 16 74493622 74493622 G A GLG1 Silent p.L1034L 0.34 TCGA-DK-A6B6-01 16 75269588 75269597 GCCACCATCA - BCAR1 Frame_Shift_Del p.D447Wfs*67 0.37 TCGA-DK-A6B6-01 16 75678257 75678257 G A KARS Missense_Mutation p.H24Y 0.33 tolerated_low_confidence(0.08) benign(0.044) TCGA-DK-A6B6-01 16 772599 772599 C T FAM173A 3'UTR 0.12 TCGA-DK-A6B6-01 16 82124573 82124573 C T HSD17B2 Missense_Mutation p.S244L 0.39 deleterious(0.01) possibly_damaging(0.507) TCGA-DK-A6B6-01 16 837843 837843 G A RPUSD1 5'UTR 0.25 TCGA-DK-A6B6-01 16 83933169 83933169 C T MLYCD Silent p.L140L 0.31 TCGA-DK-A6B6-01 16 84088150 84088150 G A MBTPS1 Silent p.I1021I 0.16 TCGA-DK-A6B6-01 16 842558 842558 C T CHTF18 Silent p.L482L 0.37 TCGA-DK-A6B6-01 16 86612809 86612809 G A FOXL1 Silent p.E160E 0.31 TCGA-DK-A6B6-01 16 8941644 8941644 G A PMM2 Missense_Mutation p.E235K 0.25 tolerated(0.1) benign(0.013) TCGA-DK-A6B6-01 16 89628100 89628100 C T RPL13 Missense_Mutation p.R121C 0.33 tolerated(0.08) benign(0.005) TCGA-DK-A6B6-01 16 89628134 89628134 C T RPL13 Missense_Mutation p.S132L 0.33 tolerated(0.07) benign(0.04) TCGA-DK-A6B6-01 16 89967141 89967141 G C TCF25 Missense_Mutation p.Q440H 0.40 tolerated(0.12) benign(0.003) TCGA-DK-A6B6-01 17 10265466 10265466 G A MYH13 Silent p.I158I 0.04 TCGA-DK-A6B6-01 17 10438398 10438398 G A MYH2 Silent p.F724F 0.67 TCGA-DK-A6B6-01 17 11554453 11554453 C T DNAH9 Missense_Mutation p.A722V 0.65 probably_damaging(0.939) TCGA-DK-A6B6-01 17 1496491 1496491 G A SLC43A2 Missense_Mutation p.P195L 0.47 tolerated(0.1) probably_damaging(0.914) TCGA-DK-A6B6-01 17 15935647 15935647 G A NCOR1 Missense_Mutation p.S2429L 0.64 probably_damaging(0.989) TCGA-DK-A6B6-01 17 16005027 16005027 A C NCOR1 Missense_Mutation p.S743A 0.11 benign(0.063) TCGA-DK-A6B6-01 17 1679943 1679943 G A SERPINF1 Missense_Mutation p.D302N 0.61 tolerated(0.27) benign(0.056) TCGA-DK-A6B6-01 17 19091383 19091383 G A SNORD3A RNA 0.11 TCGA-DK-A6B6-01 17 19835150 19835150 G A AKAP10 Missense_Mutation p.H537Y 0.18 tolerated(1) benign(0.001) TCGA-DK-A6B6-01 17 19861501 19861501 G A AKAP10 Missense_Mutation p.H235Y 0.20 tolerated(0.23) benign(0.001) TCGA-DK-A6B6-01 17 20919102 20919102 G C USP22 Silent p.L267L 0.20 TCGA-DK-A6B6-01 17 26708656 26708656 C A SARM1 Nonsense_Mutation p.S268* 0.32 TCGA-DK-A6B6-01 17 26919162 26919162 G A SPAG5 Missense_Mutation p.S367L 0.23 deleterious(0) benign(0.037) TCGA-DK-A6B6-01 17 26944223 26944223 G A KIAA0100 Intron 0.19 TCGA-DK-A6B6-01 17 27047883 27047883 C T RPL23A Missense_Mutation p.R62W 0.25 tolerated(0.16) benign(0.034) TCGA-DK-A6B6-01 17 27844576 27844576 C G TAOK1 Missense_Mutation p.L604V 0.25 tolerated(0.21) benign(0.13) TCGA-DK-A6B6-01 17 27944561 27944561 C T CORO6 Missense_Mutation p.G237D 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 17 28511835 28511835 G C NSRP1 Missense_Mutation p.E274Q 0.32 tolerated(0.08) benign(0.053) TCGA-DK-A6B6-01 17 28601168 28601168 G A BLMH Silent p.F231F 0.30 TCGA-DK-A6B6-01 17 29162548 29162548 G T ATAD5 Missense_Mutation p.K483N 0.23 deleterious(0.03) possibly_damaging(0.807) TCGA-DK-A6B6-01 17 29632365 29632365 G C EVI2B Missense_Mutation p.S88C 0.26 deleterious(0.01) benign(0.202) TCGA-DK-A6B6-01 17 29632419 29632419 G C EVI2B Nonsense_Mutation p.S70* 0.25 TCGA-DK-A6B6-01 17 30302570 30302570 C T SUZ12 Nonsense_Mutation p.Q221* 0.17 TCGA-DK-A6B6-01 17 30533948 30533948 C T RHOT1 Missense_Mutation p.S479L 0.26 tolerated(0.24) benign(0.009) TCGA-DK-A6B6-01 17 30932242 30932242 G A MYO1D Silent p.V909V 0.38 TCGA-DK-A6B6-01 17 33586669 33586669 G A SLFN5 Silent p.V320V 0.29 TCGA-DK-A6B6-01 17 33591757 33591757 C T SLFN5 Missense_Mutation p.S565L 0.27 tolerated(0.07) benign(0.018) TCGA-DK-A6B6-01 17 34849827 34849827 C T ZNHIT3 Missense_Mutation p.S88F 0.34 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 17 35872428 35872428 G A DUSP14 Missense_Mutation p.M18I 0.30 tolerated(0.4) benign(0.017) TCGA-DK-A6B6-01 17 37687226 37687226 C T CDK12 Missense_Mutation p.S1377L 0.28 benign(0.004) TCGA-DK-A6B6-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.31 deleterious(0) probably_damaging(0.994) TCGA-DK-A6B6-01 17 37901234 37901234 C T GRB7 Silent p.F359F 0.33 TCGA-DK-A6B6-01 17 38027740 38027740 G A ZPBP2 Missense_Mutation p.E90K 0.29 tolerated(0.55) benign(0.002) TCGA-DK-A6B6-01 17 38080295 38080295 G A ORMDL3 Silent p.L54L 0.24 TCGA-DK-A6B6-01 17 38975878 38975878 G T KRT10 Silent p.R422R 0.39 TCGA-DK-A6B6-01 17 39684520 39684520 G A KRT19 5'UTR 0.32 TCGA-DK-A6B6-01 17 4012970 4012970 G C ZZEF1 Silent p.V418V 0.59 TCGA-DK-A6B6-01 17 4013020 4013020 G C ZZEF1 Missense_Mutation p.L402V 0.51 tolerated(0.17) probably_damaging(0.998) TCGA-DK-A6B6-01 17 4013096 4013096 G A ZZEF1 Silent p.L376L 0.67 TCGA-DK-A6B6-01 17 40180165 40180165 C G ZNF385C Missense_Mutation p.R357T 0.36 deleterious(0.02) benign(0.253) TCGA-DK-A6B6-01 17 40705683 40705683 G A HSD17B1 Intron 0.24 TCGA-DK-A6B6-01 17 40876419 40876419 C G EZH1 Silent p.P90P 0.28 TCGA-DK-A6B6-01 17 42476606 42476606 G A GPATCH8 Missense_Mutation p.R947W 0.29 deleterious(0.04) unknown(0) TCGA-DK-A6B6-01 17 42808330 42808330 C T DBF4B Intron 0.28 TCGA-DK-A6B6-01 17 42979948 42979948 G A CCDC103 Silent p.L164L 0.38 TCGA-DK-A6B6-01 17 43044835 43044835 G C C1QL1 Silent p.L194L 0.31 TCGA-DK-A6B6-01 17 43481021 43481021 G A ARHGAP27 Silent p.F193F 0.39 TCGA-DK-A6B6-01 17 4461899 4461899 G A GGT6 Missense_Mutation p.A298V 0.62 tolerated(0.22) benign(0.012) TCGA-DK-A6B6-01 17 4463722 4463722 G A GGT6 Missense_Mutation p.S32L 0.62 tolerated_low_confidence(0.2) benign(0) TCGA-DK-A6B6-01 17 4536449 4536449 G C ALOX15 Missense_Mutation p.I470M 0.66 deleterious(0.02) possibly_damaging(0.847) TCGA-DK-A6B6-01 17 45734389 45734389 C T KPNB1 Missense_Mutation p.S149L 0.30 deleterious(0) probably_damaging(0.935) TCGA-DK-A6B6-01 17 45904544 45904544 G A MRPL10 Silent p.R93R 0.41 TCGA-DK-A6B6-01 17 46111232 46111232 C G COPZ2 Missense_Mutation p.E87Q 0.21 deleterious(0.05) benign(0.242) TCGA-DK-A6B6-01 17 46136441 46136441 C T NFE2L1 Missense_Mutation p.S586L 0.40 tolerated(0.28) benign(0.001) TCGA-DK-A6B6-01 17 46620663 46620663 G A HOXB2 Missense_Mutation p.R280C 0.27 deleterious(0.03) possibly_damaging(0.549) TCGA-DK-A6B6-01 17 46657276 46657276 G A HOXB4 5'UTR 0.35 TCGA-DK-A6B6-01 17 46670827 46670827 G A HOXB5 Missense_Mutation p.S73L 0.23 tolerated(0.07) benign(0.041) TCGA-DK-A6B6-01 17 46688210 46688210 C T HOXB7 Missense_Mutation p.G24E 0.34 deleterious(0.01) probably_damaging(0.941) TCGA-DK-A6B6-01 17 46690720 46690720 G A HOXB8 Silent p.I192I 0.33 TCGA-DK-A6B6-01 17 47809986 47809986 G A FAM117A Missense_Mutation p.S98F 0.32 deleterious(0) probably_damaging(0.991) TCGA-DK-A6B6-01 17 48627617 48627617 G C SPATA20 Missense_Mutation p.E348Q 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 17 4889554 4889554 G A CAMTA2 Silent p.L11L 0.16 TCGA-DK-A6B6-01 17 5289500 5289500 C T NUP88 3'UTR 0.60 TCGA-DK-A6B6-01 17 56388027 56388027 G A BZRAP1 Missense_Mutation p.A1182V 0.26 tolerated(0.21) benign(0.002) TCGA-DK-A6B6-01 17 56780672 56780672 C T RAD51C Silent p.F229F 0.16 TCGA-DK-A6B6-01 17 57105805 57105805 G A TRIM37 Missense_Mutation p.S743L 0.29 deleterious_low_confidence(0.01) benign(0.231) TCGA-DK-A6B6-01 17 58260692 58260692 G A USP32 Silent p.L1319L 0.30 TCGA-DK-A6B6-01 17 59989042 59989042 G A INTS2 Missense_Mutation p.H273Y 0.50 deleterious(0.01) possibly_damaging(0.84) TCGA-DK-A6B6-01 17 60503990 60503990 C T METTL2A Missense_Mutation p.S178F 0.32 deleterious(0.04) benign(0.033) TCGA-DK-A6B6-01 17 60613531 60613531 C A TLK2 Silent p.R122R 0.30 TCGA-DK-A6B6-01 17 61905455 61905455 C T PSMC5 Intron 0.28 TCGA-DK-A6B6-01 17 62022936 62022936 G A SCN4A Silent p.L1168L 0.46 TCGA-DK-A6B6-01 17 65119214 65119214 G C HELZ Missense_Mutation p.L1168V 0.41 tolerated_low_confidence(0.06) benign(0.124) TCGA-DK-A6B6-01 17 6515415 6515415 G A KIAA0753 Missense_Mutation p.L457F 0.67 tolerated(0.65) benign(0.007) TCGA-DK-A6B6-01 17 66274388 66274388 C T SLC16A6 Nonsense_Mutation p.W25* 0.40 TCGA-DK-A6B6-01 17 72246433 72246433 G A TTYH2 Silent p.L351L 0.23 TCGA-DK-A6B6-01 17 72308333 72308333 G A DNAI2 Silent p.K562K 0.38 TCGA-DK-A6B6-01 17 72350302 72350302 G C KIF19 Missense_Mutation p.E770D 0.20 tolerated(0.19) benign(0.418) TCGA-DK-A6B6-01 17 72462872 72462872 C G CD300A Silent p.L10L 0.17 TCGA-DK-A6B6-01 17 73096793 73096793 C T SLC16A5 Silent p.I345I 0.32 TCGA-DK-A6B6-01 17 73096826 73096826 C T SLC16A5 Silent p.I356I 0.39 TCGA-DK-A6B6-01 17 73265518 73265518 C G MIF4GD Missense_Mutation p.E39Q 0.27 tolerated_low_confidence(0.47) benign(0.003) TCGA-DK-A6B6-01 17 73775020 73775020 C T H3F3B Silent p.E51E 0.32 TCGA-DK-A6B6-01 17 73775041 73775041 G A H3F3B Silent p.P44P 0.31 TCGA-DK-A6B6-01 17 73945896 73945896 G A ACOX1 Nonsense_Mutation p.Q461* 0.38 TCGA-DK-A6B6-01 17 73974990 73974990 G A ACOX1 Intron 0.36 TCGA-DK-A6B6-01 17 7401070 7401070 C T POLR2A Silent p.F361F 0.53 TCGA-DK-A6B6-01 17 7401401 7401401 C G POLR2A Missense_Mutation p.Q403E 0.62 benign(0.439) TCGA-DK-A6B6-01 17 74625176 74625176 C T ST6GALNAC1 Missense_Mutation p.R250K 0.28 benign(0.005) TCGA-DK-A6B6-01 17 74625185 74625185 C T ST6GALNAC1 Missense_Mutation p.R247K 0.30 benign(0.011) TCGA-DK-A6B6-01 17 7466472 7466472 C T SENP3 Missense_Mutation p.P27S 0.81 deleterious_low_confidence(0.04) unknown(0) TCGA-DK-A6B6-01 17 74729258 74729258 G C METTL23 Missense_Mutation p.D95H 0.41 deleterious(0) probably_damaging(0.996) TCGA-DK-A6B6-01 17 74732170 74732170 C G SRSF2 3'UTR 0.26 TCGA-DK-A6B6-01 17 7533733 7533733 G C SHBG Splice_Site p.X38_splice 0.68 TCGA-DK-A6B6-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.61 TCGA-DK-A6B6-01 17 76810611 76810611 G A USP36 Silent p.L349L 0.29 TCGA-DK-A6B6-01 17 78293122 78293122 C T RNF213 Intron 0.37 TCGA-DK-A6B6-01 17 7852456 7852456 G A CNTROB Missense_Mutation p.G878D 0.63 deleterious_low_confidence(0.01) benign(0.165) TCGA-DK-A6B6-01 17 79225138 79225138 G C SLC38A10 Intron 0.39 TCGA-DK-A6B6-01 17 79517476 79517476 G A C17orf70 Silent p.L348L 0.35 TCGA-DK-A6B6-01 17 80042141 80042141 G A FASN Missense_Mutation p.P1630S 0.14 tolerated(0.58) benign(0.001) TCGA-DK-A6B6-01 17 80279990 80279990 C T SECTM1 3'UTR 0.38 TCGA-DK-A6B6-01 17 8076868 8076868 C T TMEM107 3'Flank 0.21 TCGA-DK-A6B6-01 17 8079641 8079641 G A TMEM107 5'UTR 0.78 TCGA-DK-A6B6-01 18 20569211 20569211 C T RBBP8 Missense_Mutation p.P246L 0.31 tolerated(0.74) benign(0.009) TCGA-DK-A6B6-01 18 21407314 21407314 C G LAMA3 Missense_Mutation p.F902L 0.04 probably_damaging(0.999) TCGA-DK-A6B6-01 18 21427462 21427462 G A LAMA3 Missense_Mutation p.M1322I 0.31 benign(0.002) TCGA-DK-A6B6-01 18 2606449 2606449 G T NDC80 Silent p.V500V 0.34 TCGA-DK-A6B6-01 18 28934958 28934958 G A DSG1 Missense_Mutation p.M933I 0.32 tolerated(0.1) benign(0.003) TCGA-DK-A6B6-01 18 31323084 31323084 G C ASXL3 Missense_Mutation p.G1091A 0.21 benign(0.338) TCGA-DK-A6B6-01 18 33744582 33744582 C T ELP2 Nonsense_Mutation p.R701* 0.35 TCGA-DK-A6B6-01 18 3596824 3596824 C T DLGAP1 Intron 0.45 TCGA-DK-A6B6-01 18 43667111 43667111 G A ATP5A1 Missense_Mutation p.R347W 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-A6B6-01 18 47809094 47809094 C T CXXC1 Missense_Mutation p.E618K 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-DK-A6B6-01 18 50278591 50278591 G A DCC Missense_Mutation p.E87K 0.28 deleterious(0.01) benign(0.043) TCGA-DK-A6B6-01 18 59483505 59483505 G A RNF152 Silent p.F64F 0.35 TCGA-DK-A6B6-01 18 60646244 60646244 G T PHLPP1 Missense_Mutation p.E1578D 0.41 tolerated(0.32) benign(0.002) TCGA-DK-A6B6-01 18 71822567 71822567 G C TIMM21 Missense_Mutation p.E131Q 0.41 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 18 74607200 74607200 C G ZNF236 Missense_Mutation p.S548C 0.34 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 18 78005300 78005300 G A PARD6G 5'UTR 0.41 TCGA-DK-A6B6-01 18 8380381 8380381 C T PTPRM Missense_Mutation p.H1292Y 0.44 deleterious(0.01) possibly_damaging(0.767) TCGA-DK-A6B6-01 18 8793080 8793080 C T SOGA2 Nonsense_Mutation p.Q658* 0.25 TCGA-DK-A6B6-01 19 10203262 10203262 G A C19orf66 3'UTR 0.28 TCGA-DK-A6B6-01 19 10220324 10220324 C T PPAN Silent p.I177I 0.32 TCGA-DK-A6B6-01 19 10220901 10220901 G C PPAN Missense_Mutation p.Q267H 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 19 10503962 10503962 G A CDC37 Silent p.P294P 0.25 TCGA-DK-A6B6-01 19 10541684 10541684 C T PDE4A Intron 0.43 TCGA-DK-A6B6-01 19 1055909 1055909 G C ABCA7 Silent p.L1403L 0.31 TCGA-DK-A6B6-01 19 10610719 10610719 G A KEAP1 5'UTR 0.35 TCGA-DK-A6B6-01 19 10742160 10742160 G A SLC44A2 Missense_Mutation p.E151K 0.31 tolerated(0.11) benign(0.001) TCGA-DK-A6B6-01 19 10742373 10742373 G A SLC44A2 Missense_Mutation p.E192K 0.31 tolerated(0.51) benign(0.001) TCGA-DK-A6B6-01 19 10742593 10742593 G A SLC44A2 Missense_Mutation p.E226K 0.31 deleterious(0) benign(0.15) TCGA-DK-A6B6-01 19 10886554 10886554 C T DNM2 Silent p.L187L 0.34 TCGA-DK-A6B6-01 19 11034231 11034231 C T YIPF2 Silent p.V258V 0.30 TCGA-DK-A6B6-01 19 11979545 11979545 C T ZNF439 3'UTR 0.24 TCGA-DK-A6B6-01 19 12060204 12060204 C T ZNF700 Silent p.F455F 0.40 TCGA-DK-A6B6-01 19 12298524 12298524 G T ZNF136 Missense_Mutation p.G444V 0.32 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B6-01 19 12298526 12298526 G A ZNF136 Missense_Mutation p.E445K 0.32 deleterious(0.02) possibly_damaging(0.857) TCGA-DK-A6B6-01 19 1251879 1251879 C T MIDN Silent p.L121L 0.20 TCGA-DK-A6B6-01 19 1251888 1251888 C T MIDN Silent p.L124L 0.62 TCGA-DK-A6B6-01 19 12780690 12780690 G T WDR83 Missense_Mutation p.R29L 0.25 tolerated(0.11) probably_damaging(1) TCGA-DK-A6B6-01 19 12825888 12825888 G A TNPO2 Silent p.L248L 0.45 TCGA-DK-A6B6-01 19 12902735 12902735 C T JUNB Silent p.L50L 0.25 TCGA-DK-A6B6-01 19 14037518 14037518 G C CC2D1A Missense_Mutation p.D685H 0.31 deleterious(0) probably_damaging(0.992) TCGA-DK-A6B6-01 19 14037855 14037855 G C CC2D1A Missense_Mutation p.Q730H 0.34 deleterious(0.03) probably_damaging(1) TCGA-DK-A6B6-01 19 14231221 14231221 G A ASF1B 3'UTR 0.29 TCGA-DK-A6B6-01 19 1432626 1432626 C T DAZAP1 Nonsense_Mutation p.Q329* 0.36 TCGA-DK-A6B6-01 19 14640387 14640387 G A TECR 5'UTR 0.19 TCGA-DK-A6B6-01 19 15354140 15354140 C T BRD4 Missense_Mutation p.E914K 0.25 benign(0.292) TCGA-DK-A6B6-01 19 1567495 1567495 G C MEX3D Missense_Mutation p.S188C 0.39 deleterious(0) probably_damaging(0.975) TCGA-DK-A6B6-01 19 1584638 1584638 C G MBD3 Missense_Mutation p.Q103H 0.39 deleterious(0) probably_damaging(0.969) TCGA-DK-A6B6-01 19 15918533 15918533 G A OR10H1 Silent p.F105F 0.15 TCGA-DK-A6B6-01 19 17343275 17343275 G A NR2F6 Silent p.L367L 0.38 TCGA-DK-A6B6-01 19 17476226 17476226 C T PLVAP Missense_Mutation p.E350K 0.28 deleterious(0) probably_damaging(0.94) TCGA-DK-A6B6-01 19 17895674 17895674 G C FCHO1 Missense_Mutation p.Q789H 0.31 deleterious(0.04) benign(0.008) TCGA-DK-A6B6-01 19 18232507 18232507 G A MAST3 Silent p.G28G 0.32 TCGA-DK-A6B6-01 19 18420561 18420561 G A LSM4 Silent p.A85A 0.26 TCGA-DK-A6B6-01 19 18684538 18684538 C T UBA52 Missense_Mutation p.S57L 0.42 deleterious(0.04) possibly_damaging(0.842) TCGA-DK-A6B6-01 19 19049694 19049694 C T HOMER3 Splice_Site p.X5_splice 0.25 TCGA-DK-A6B6-01 19 19106032 19106032 G A SUGP2 Nonsense_Mutation p.Q1017* 0.33 TCGA-DK-A6B6-01 19 19106033 19106033 G A SUGP2 Silent p.F1016F 0.33 TCGA-DK-A6B6-01 19 1953910 1953910 C T CSNK1G2 Intron 0.31 TCGA-DK-A6B6-01 19 19655464 19655464 G A CILP2 Missense_Mutation p.G704S 0.39 tolerated(0.58) benign(0.003) TCGA-DK-A6B6-01 19 19655962 19655962 G A CILP2 Missense_Mutation p.D870N 0.32 tolerated(1) benign(0.001) TCGA-DK-A6B6-01 19 19656098 19656098 G A CILP2 Missense_Mutation p.R915Q 0.23 tolerated(0.27) benign(0.01) TCGA-DK-A6B6-01 19 19758433 19758433 G A ATP13A1 Missense_Mutation p.S923F 0.14 deleterious(0.05) benign(0.104) TCGA-DK-A6B6-01 19 22157006 22157006 A C ZNF208 Missense_Mutation p.I277R 0.31 tolerated(1) benign(0.012) TCGA-DK-A6B6-01 19 2273075 2273075 G A OAZ1 Missense_Mutation p.E219K 0.24 deleterious(0.01) unknown(0) TCGA-DK-A6B6-01 19 23316917 23316917 C T ZNF730 Silent p.F13F 0.20 TCGA-DK-A6B6-01 19 23926686 23926686 G A ZNF681 Missense_Mutation p.H556Y 0.29 deleterious(0.05) possibly_damaging(0.684) TCGA-DK-A6B6-01 19 2405465 2405465 G A TMPRSS9 Missense_Mutation p.R221Q 0.31 deleterious(0.04) possibly_damaging(0.7) TCGA-DK-A6B6-01 19 2851465 2851465 G C ZNF555 Splice_Site p.X44_splice 0.34 TCGA-DK-A6B6-01 19 2917917 2917917 C T ZNF57 Missense_Mutation p.S433L 0.26 deleterious(0.04) probably_damaging(0.95) TCGA-DK-A6B6-01 19 33716513 33716513 G A SLC7A10 Missense_Mutation p.R33W 0.28 deleterious(0.01) possibly_damaging(0.579) TCGA-DK-A6B6-01 19 35449261 35449261 G A ZNF792 Missense_Mutation p.H500Y 0.40 deleterious(0) probably_damaging(0.994) TCGA-DK-A6B6-01 19 36673472 36673472 G A ZNF565 Nonsense_Mutation p.Q466* 0.25 TCGA-DK-A6B6-01 19 36940789 36940789 G A ZNF566 Missense_Mutation p.S117F 0.39 tolerated(0.13) possibly_damaging(0.665) TCGA-DK-A6B6-01 19 37117520 37117520 G A ZNF382 Missense_Mutation p.E241K 0.39 tolerated(0.33) benign(0.164) TCGA-DK-A6B6-01 19 37369175 37369175 C T ZNF345 Silent p.L481L 0.37 TCGA-DK-A6B6-01 19 38895578 38895578 G A FAM98C Missense_Mutation p.R127H 0.28 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 19 39034176 39034176 C G RYR1 Missense_Mutation p.S3928C 0.31 benign(0.056) TCGA-DK-A6B6-01 19 39208572 39208572 C T ACTN4 Silent p.I383I 0.41 TCGA-DK-A6B6-01 19 39359727 39359727 G A RINL 3'UTR 0.28 TCGA-DK-A6B6-01 19 39924298 39924298 G A RPS16 Intron 0.49 TCGA-DK-A6B6-01 19 40541190 40541190 C A ZNF780B Nonsense_Mutation p.E526* 0.25 TCGA-DK-A6B6-01 19 40542233 40542233 G C ZNF780B Nonsense_Mutation p.S178* 0.21 TCGA-DK-A6B6-01 19 4110574 4110574 G A MAP2K2 Missense_Mutation p.P128L 0.41 deleterious(0) possibly_damaging(0.908) TCGA-DK-A6B6-01 19 41748804 41748804 T G AXL Silent p.T443T 0.34 TCGA-DK-A6B6-01 19 42410943 42410943 C T ARHGEF1 3'UTR 0.31 TCGA-DK-A6B6-01 19 42906928 42906928 C T LIPE Missense_Mutation p.R933K 0.26 tolerated(0.43) benign(0.001) TCGA-DK-A6B6-01 19 4409482 4409482 G A CHAF1A Missense_Mutation p.G229E 0.27 tolerated_low_confidence(0.14) unknown(0) TCGA-DK-A6B6-01 19 44981097 44981097 G A ZNF180 Missense_Mutation p.S534F 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 19 45973689 45973689 G A FOSB Intron 0.62 TCGA-DK-A6B6-01 19 47597284 47597284 G A ZC3H4 Silent p.F145F 0.28 TCGA-DK-A6B6-01 19 48229211 48229211 C T EHD2 Silent p.R215R 0.43 TCGA-DK-A6B6-01 19 49207033 49207033 G C FUT2 Missense_Mutation p.D274H 0.29 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 19 49254224 49254224 G A FUT1 Silent p.L105L 0.54 TCGA-DK-A6B6-01 19 4944429 4944429 C T UHRF1 RNA 0.32 TCGA-DK-A6B6-01 19 49539155 49539155 G T CGB1 Silent p.T60T 0.13 TCGA-DK-A6B6-01 19 49539156 49539156 G T CGB1 Missense_Mutation p.T60N 0.13 tolerated(0.12) benign(0.045) TCGA-DK-A6B6-01 19 49619676 49619676 G A LIN7B Missense_Mutation p.D129N 0.39 deleterious(0.01) benign(0.098) TCGA-DK-A6B6-01 19 49631242 49631242 G A PPFIA3 Missense_Mutation p.E38K 0.29 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 19 50310454 50310454 C T FUZ Missense_Mutation p.R404Q 0.36 deleterious(0.02) probably_damaging(0.947) TCGA-DK-A6B6-01 19 50381464 50381464 C T TBC1D17 Missense_Mutation p.S29F 0.50 tolerated(0.06) probably_damaging(0.933) TCGA-DK-A6B6-01 19 50394272 50394272 G A IL4I1 Silent p.F265F 0.40 TCGA-DK-A6B6-01 19 50542477 50542477 C T ZNF473 Silent p.L23L 0.24 TCGA-DK-A6B6-01 19 50655892 50655892 G C IZUMO2 Missense_Mutation p.Q214E 0.23 tolerated(0.14) benign(0.092) TCGA-DK-A6B6-01 19 51452365 51452365 G A KLK5 Silent p.F114F 0.50 TCGA-DK-A6B6-01 19 51671614 51671614 C G CTD-3187F8.14 Intron 0.33 TCGA-DK-A6B6-01 19 52376322 52376322 G C ZNF577 Missense_Mutation p.F307L 0.28 tolerated(0.2) probably_damaging(0.997) TCGA-DK-A6B6-01 19 52538020 52538020 G A ZNF432 Silent p.L304L 0.42 TCGA-DK-A6B6-01 19 52568376 52568376 G C ZNF841 Missense_Mutation p.S920C 0.33 tolerated_low_confidence(0.07) probably_damaging(0.925) TCGA-DK-A6B6-01 19 52659358 52659358 G A ZNF836 Silent p.Y526Y 0.48 TCGA-DK-A6B6-01 19 53207567 53207567 G C ZNF611 3'UTR 0.25 TCGA-DK-A6B6-01 19 53208069 53208069 G A ZNF611 3'UTR 0.26 TCGA-DK-A6B6-01 19 53209265 53209265 C A ZNF611 Missense_Mutation p.C348F 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 19 53302619 53302619 C T ZNF28 3'UTR 0.38 TCGA-DK-A6B6-01 19 53761945 53761945 C T VN1R2 Missense_Mutation p.S106L 0.15 tolerated(0.07) benign(0.212) TCGA-DK-A6B6-01 19 53989916 53989916 G A ZNF813 Missense_Mutation p.E16K 0.20 deleterious(0.03) possibly_damaging(0.458) TCGA-DK-A6B6-01 19 54618048 54618048 G A TFPT Missense_Mutation p.S19L 0.27 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 19 54665850 54665850 G A TMC4 Silent p.F564F 0.40 TCGA-DK-A6B6-01 19 54710425 54710425 C T RPS9 Intron 0.24 TCGA-DK-A6B6-01 19 55019130 55019130 C T LAIR2 Missense_Mutation p.S32L 0.25 tolerated(0.17) benign(0.11) TCGA-DK-A6B6-01 19 55450518 55450518 G A NLRP7 Missense_Mutation p.L557F 0.26 tolerated(0.7) benign(0.042) TCGA-DK-A6B6-01 19 55652617 55652617 G C TNNT1 Missense_Mutation p.I82M 0.14 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 19 55992896 55992896 C T ZNF628 Silent p.S112S 0.27 TCGA-DK-A6B6-01 19 56113777 56113777 C T ZNF524 Missense_Mutation p.S100L 0.62 tolerated(0.06) benign(0.004) TCGA-DK-A6B6-01 19 5657277 5657277 C T SAFB Missense_Mutation p.S594L 0.28 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 19 56935399 56935399 C A ZNF583 Missense_Mutation p.H458N 0.22 deleterious(0) probably_damaging(0.994) TCGA-DK-A6B6-01 19 57328561 57328561 C G PEG3 Missense_Mutation p.E417Q 0.20 deleterious(0.01) possibly_damaging(0.849) TCGA-DK-A6B6-01 19 57640386 57640386 G A USP29 Missense_Mutation p.D115N 0.39 tolerated(0.4) benign(0) TCGA-DK-A6B6-01 19 58049730 58049730 C T ZNF549 Missense_Mutation p.S453L 0.32 tolerated(0.13) benign(0.237) TCGA-DK-A6B6-01 19 58326190 58326190 G A ZNF552 5'UTR 0.33 TCGA-DK-A6B6-01 19 6393027 6393027 G A GTF2F1 5'UTR 0.35 TCGA-DK-A6B6-01 19 726158 726158 C T PALM Missense_Mutation p.T9M 0.31 tolerated(0.08) possibly_damaging(0.454) TCGA-DK-A6B6-01 19 7987343 7987343 C A SNAPC2 Silent p.V233V 0.27 TCGA-DK-A6B6-01 19 7987739 7987739 C A SNAPC2 3'UTR 0.34 TCGA-DK-A6B6-01 19 8553828 8553828 G C HNRNPM 3'UTR 0.31 TCGA-DK-A6B6-01 19 9058659 9058659 G A MUC16 Missense_Mutation p.S9596L 0.48 unknown(0) TCGA-DK-A6B6-01 19 9213242 9213242 C G OR7G2 Missense_Mutation p.L247F 0.31 deleterious(0.02) benign(0.386) TCGA-DK-A6B6-01 19 9583855 9583855 C T ZNF560 Missense_Mutation p.D80N 0.29 tolerated_low_confidence(0.08) benign(0.018) TCGA-DK-A6B6-01 19 9721764 9721764 G A ZNF561 Silent p.L191L 0.40 TCGA-DK-A6B6-01 19 9764312 9764312 G A ZNF562 Silent p.L198L 0.30 TCGA-DK-A6B6-01 1 100177720 100177720 C T FRRS1 Splice_Site p.X474_splice 0.36 TCGA-DK-A6B6-01 1 10532399 10532399 G C DFFA Silent p.L39L 0.13 TCGA-DK-A6B6-01 1 107599529 107599529 C T PRMT6 Silent p.R64R 0.26 TCGA-DK-A6B6-01 1 109477397 109477397 G C CLCC1 Silent p.L517L 0.34 TCGA-DK-A6B6-01 1 110146084 110146084 G C GNAT2 Missense_Mutation p.I319M 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-DK-A6B6-01 1 110146628 110146628 G C GNAT2 Silent p.L273L 0.53 TCGA-DK-A6B6-01 1 110146643 110146643 G A GNAT2 Silent p.L268L 0.50 TCGA-DK-A6B6-01 1 110146645 110146645 G A GNAT2 Missense_Mutation p.L268F 0.52 deleterious(0.02) possibly_damaging(0.791) TCGA-DK-A6B6-01 1 110148938 110148938 C G GNAT2 Missense_Mutation p.L194F 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-DK-A6B6-01 1 110884788 110884788 C T RBM15 Missense_Mutation p.H921Y 0.47 tolerated(0.92) benign(0.317) TCGA-DK-A6B6-01 1 11182125 11182125 G A MTOR Missense_Mutation p.P2241S 0.23 tolerated(0.1) probably_damaging(0.977) TCGA-DK-A6B6-01 1 112281840 112281840 C T FAM212B Missense_Mutation p.D9N 0.35 tolerated(0.07) possibly_damaging(0.836) TCGA-DK-A6B6-01 1 112318791 112318791 C G KCND3 Missense_Mutation p.E626Q 0.24 deleterious_low_confidence(0.01) benign(0.403) TCGA-DK-A6B6-01 1 11333645 11333645 C T UBIAD1 Silent p.V19V 0.12 TCGA-DK-A6B6-01 1 115537623 115537623 G A SYCP1 Missense_Mutation p.E972K 0.14 deleterious(0.02) possibly_damaging(0.587) TCGA-DK-A6B6-01 1 117122162 117122162 G A IGSF3 Silent p.L1082L 0.40 TCGA-DK-A6B6-01 1 117663548 117663548 G C TRIM45 Missense_Mutation p.I92M 0.42 tolerated(0.1) possibly_damaging(0.627) TCGA-DK-A6B6-01 1 1277116 1277116 G A DVL1 Missense_Mutation p.S179F 0.28 deleterious(0) probably_damaging(0.919) TCGA-DK-A6B6-01 1 1461861 1461861 C T ATAD3A Silent p.L477L 0.14 TCGA-DK-A6B6-01 1 149871699 149871699 C T BOLA1 Silent p.I29I 0.47 TCGA-DK-A6B6-01 1 150443406 150443406 C T RPRD2 Missense_Mutation p.S661L 0.35 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-DK-A6B6-01 1 150599891 150599891 G A ENSA Intron 0.17 TCGA-DK-A6B6-01 1 150772119 150772119 C T CTSK Missense_Mutation p.E229K 0.05 tolerated(0.71) benign(0.003) TCGA-DK-A6B6-01 1 150974810 150974810 G A FAM63A Missense_Mutation p.S143F 0.40 deleterious_low_confidence(0.03) benign(0.022) TCGA-DK-A6B6-01 1 151020668 151020668 C T C1orf56 Silent p.A115A 0.22 TCGA-DK-A6B6-01 1 151063031 151063031 C T GABPB2 Silent p.I86I 0.45 TCGA-DK-A6B6-01 1 151158411 151158411 C T VPS72 Missense_Mutation p.E45K 0.19 deleterious(0) possibly_damaging(0.897) TCGA-DK-A6B6-01 1 151496787 151496787 C T CGN Silent p.L452L 0.37 TCGA-DK-A6B6-01 1 152058492 152058492 C G TCHHL1 Missense_Mutation p.E556Q 0.23 tolerated(0.07) possibly_damaging(0.77) TCGA-DK-A6B6-01 1 153277445 153277445 G T PGLYRP3 Silent p.I118I 0.57 TCGA-DK-A6B6-01 1 153666012 153666012 C G NPR1 3'UTR 0.56 TCGA-DK-A6B6-01 1 153909176 153909176 C G DENND4B Missense_Mutation p.E761Q 0.32 tolerated(1) benign(0.163) TCGA-DK-A6B6-01 1 153931023 153931023 C T CRTC2 5'UTR 0.56 TCGA-DK-A6B6-01 1 153949189 153949189 G A JTB Missense_Mutation p.P62S 0.21 tolerated(0.14) benign(0.079) TCGA-DK-A6B6-01 1 154527951 154527951 G A UBE2Q1 Nonsense_Mutation p.Q164* 0.17 TCGA-DK-A6B6-01 1 156146792 156146792 C G SEMA4A 3'UTR 0.20 TCGA-DK-A6B6-01 1 156670374 156670374 G A CRABP2 Missense_Mutation p.S109L 0.15 tolerated(0.5) benign(0.177) TCGA-DK-A6B6-01 1 156821484 156821484 G A INSRR Silent p.G346G 0.14 TCGA-DK-A6B6-01 1 15755247 15755247 C T EFHD2 3'UTR 0.27 TCGA-DK-A6B6-01 1 157665191 157665191 C T FCRL3 Missense_Mutation p.G447R 0.20 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 1 15892465 15892465 C T DNAJC16 Silent p.L550L 0.42 TCGA-DK-A6B6-01 1 160104336 160104336 C T ATP1A2 Silent p.I630I 0.29 TCGA-DK-A6B6-01 1 161132481 161132481 C T USP21 Silent p.V286V 0.61 TCGA-DK-A6B6-01 1 161134932 161134932 C T USP21 Missense_Mutation p.R536C 0.21 tolerated(0.08) benign(0.036) TCGA-DK-A6B6-01 1 161142045 161142045 C G B4GALT3 Missense_Mutation p.D294H 0.45 deleterious(0.01) benign(0.057) TCGA-DK-A6B6-01 1 161143460 161143460 C G B4GALT3 Silent p.L246L 0.47 TCGA-DK-A6B6-01 1 161143645 161143645 C G B4GALT3 Intron 0.39 TCGA-DK-A6B6-01 1 161496076 161496076 C T HSPA6 Missense_Mutation p.S543L 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.559) TCGA-DK-A6B6-01 1 161654839 161654839 C T RPL31P11 RNA 0.36 TCGA-DK-A6B6-01 1 161719828 161719828 C T DUSP12 Silent p.F79F 0.22 TCGA-DK-A6B6-01 1 163306609 163306609 G A NUF2 Missense_Mutation p.E136K 0.12 deleterious(0.01) possibly_damaging(0.703) TCGA-DK-A6B6-01 1 166818540 166818540 C T POGK Nonsense_Mutation p.Q242* 0.48 TCGA-DK-A6B6-01 1 169366570 169366570 C T CCDC181 Silent p.E424E 0.19 TCGA-DK-A6B6-01 1 1696732 1696732 G A NADK Silent p.I38I 0.40 TCGA-DK-A6B6-01 1 169761959 169761959 G A METTL18 Missense_Mutation p.S293L 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 1 178514972 178514972 C G C1ORF220 Missense_Mutation p.H120D 0.36 benign(0.402) TCGA-DK-A6B6-01 1 178871301 178871301 G A RALGPS2 Missense_Mutation p.D529N 0.37 tolerated(0.34) benign(0.012) TCGA-DK-A6B6-01 1 179095626 179095626 G A ABL2 Silent p.I191I 0.26 TCGA-DK-A6B6-01 1 179304703 179304703 C T SOAT1 Silent p.L80L 0.45 TCGA-DK-A6B6-01 1 179820259 179820259 G C TOR1AIP2 Missense_Mutation p.Q92E 0.26 tolerated_low_confidence(0.21) benign(0.119) TCGA-DK-A6B6-01 1 180913689 180913689 G A KIAA1614 Intron 0.17 TCGA-DK-A6B6-01 1 184671965 184671965 G C EDEM3 Missense_Mutation p.S790C 0.24 tolerated(0.05) probably_damaging(0.94) TCGA-DK-A6B6-01 1 186277669 186277669 G C PRG4 Missense_Mutation p.E940Q 0.21 unknown(0) TCGA-DK-A6B6-01 1 186291451 186291451 G A TPR Missense_Mutation p.H2154Y 0.28 benign(0.119) TCGA-DK-A6B6-01 1 19441973 19441973 G A UBR4 Missense_Mutation p.P3661L 0.39 probably_damaging(0.981) TCGA-DK-A6B6-01 1 19547418 19547418 G A EMC1 Intron 0.31 TCGA-DK-A6B6-01 1 197889112 197889112 C T LHX9 Missense_Mutation p.P62L 0.43 tolerated(0.69) benign(0.001) TCGA-DK-A6B6-01 1 200954082 200954082 G A KIF21B Silent p.F1236F 0.17 TCGA-DK-A6B6-01 1 200957427 200957427 G C KIF21B Missense_Mutation p.F1135L 0.15 tolerated(0.72) benign(0) TCGA-DK-A6B6-01 1 202096876 202096876 C T GPR37L1 Missense_Mutation p.S213F 0.30 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 1 204214819 204214819 G A PLEKHA6 Silent p.I652I 0.24 TCGA-DK-A6B6-01 1 204226578 204226578 G A PLEKHA6 Missense_Mutation p.S476L 0.38 deleterious(0) probably_damaging(0.99) TCGA-DK-A6B6-01 1 204393850 204393850 G A PIK3C2B 3'UTR 0.51 TCGA-DK-A6B6-01 1 205350891 205350891 C G LEMD1 Missense_Mutation p.W147C 0.17 tolerated(0.18) possibly_damaging(0.759) TCGA-DK-A6B6-01 1 205779453 205779453 G A SLC41A1 Silent p.F39F 0.38 TCGA-DK-A6B6-01 1 207925516 207925516 C T CD46 5'UTR 0.42 TCGA-DK-A6B6-01 1 210578017 210578017 C G HHAT Missense_Mutation p.I227M 0.41 tolerated(0.21) benign(0.275) TCGA-DK-A6B6-01 1 21071503 21071503 G A HP1BP3 Silent p.V483V 0.33 TCGA-DK-A6B6-01 1 212254019 212254019 G C DTL Missense_Mutation p.E396D 0.50 tolerated(0.15) benign(0.007) TCGA-DK-A6B6-01 1 212553308 212553308 C G TMEM206 Silent p.L250L 0.20 TCGA-DK-A6B6-01 1 213302993 213302993 C T RPS6KC1 Missense_Mutation p.S199L 0.50 tolerated(0.3) benign(0.003) TCGA-DK-A6B6-01 1 214551305 214551305 C T PTPN14 Silent p.E895E 0.14 TCGA-DK-A6B6-01 1 220752768 220752768 C T MARK1 Missense_Mutation p.R42W 0.29 deleterious(0) possibly_damaging(0.881) TCGA-DK-A6B6-01 1 221054599 221054599 C T HLX Missense_Mutation p.S219L 0.24 deleterious(0) possibly_damaging(0.636) TCGA-DK-A6B6-01 1 226589954 226589954 G A PARP1 Nonsense_Mutation p.Q83* 0.17 TCGA-DK-A6B6-01 1 229730260 229730260 G A TAF5L Silent p.F518F 0.29 TCGA-DK-A6B6-01 1 230203084 230203084 C G GALNT2 Missense_Mutation p.I19M 0.19 tolerated(0.23) benign(0.195) TCGA-DK-A6B6-01 1 230822834 230822834 C T COG2 Nonsense_Mutation p.Q512* 0.17 TCGA-DK-A6B6-01 1 231413337 231413337 G A GNPAT 3'UTR 0.39 TCGA-DK-A6B6-01 1 23346070 23346070 C T KDM1A 5'UTR 0.41 TCGA-DK-A6B6-01 1 23710889 23710889 C T TCEA3 Missense_Mutation p.E330K 0.17 deleterious(0) probably_damaging(0.986) TCGA-DK-A6B6-01 1 24409086 24409086 G C MYOM3 Missense_Mutation p.L697V 0.20 deleterious(0.02) benign(0.045) TCGA-DK-A6B6-01 1 24645941 24645941 C T GRHL3 5'UTR 0.38 TCGA-DK-A6B6-01 1 247150906 247150906 G A ZNF695 Missense_Mutation p.S304F 0.32 deleterious(0) possibly_damaging(0.891) TCGA-DK-A6B6-01 1 247769302 247769302 C T OR2G3 Missense_Mutation p.R139W 0.18 deleterious(0.05) benign(0.022) TCGA-DK-A6B6-01 1 248202255 248202255 C T OR2L2 Missense_Mutation p.S229F 0.29 deleterious(0) probably_damaging(0.993) TCGA-DK-A6B6-01 1 24987249 24987249 C T SRRM1 Missense_Mutation p.S452L 0.23 benign(0.184) TCGA-DK-A6B6-01 1 27210662 27210662 G A GPN2 Silent p.F283F 0.17 TCGA-DK-A6B6-01 1 28208599 28208599 G A THEMIS2 Nonsense_Mutation p.W255* 0.29 TCGA-DK-A6B6-01 1 28605669 28605669 A G SESN2 Missense_Mutation p.I425V 0.28 tolerated(0.18) benign(0.054) TCGA-DK-A6B6-01 1 31532158 31532158 G A PUM1 Nonsense_Mutation p.Q86* 0.37 TCGA-DK-A6B6-01 1 32120441 32120441 C T COL16A1 Missense_Mutation p.D1437N 0.33 probably_damaging(0.998) TCGA-DK-A6B6-01 1 32120448 32120448 C T COL16A1 Silent p.V1434V 0.34 TCGA-DK-A6B6-01 1 32505160 32505160 C T KHDRBS1 Missense_Mutation p.S407F 0.19 deleterious(0) probably_damaging(0.974) TCGA-DK-A6B6-01 1 33233522 33233522 C T KIAA1522 Nonsense_Mutation p.Q124* 0.25 TCGA-DK-A6B6-01 1 33291961 33291961 G C S100PBP Silent p.G87G 0.56 TCGA-DK-A6B6-01 1 35940500 35940500 C T KIAA0319L Silent p.K307K 0.44 TCGA-DK-A6B6-01 1 36437683 36437683 C T AGO3 Missense_Mutation p.S124L 0.35 tolerated(0.17) benign(0.036) TCGA-DK-A6B6-01 1 3732014 3732014 C T CEP104 Silent p.P910P 0.37 TCGA-DK-A6B6-01 1 38033324 38033324 C G GNL2 Missense_Mutation p.E665Q 0.38 tolerated(0.13) possibly_damaging(0.701) TCGA-DK-A6B6-01 1 3807144 3807144 C G C1orf174 Missense_Mutation p.E203Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-DK-A6B6-01 1 39876194 39876194 G C KIAA0754 5'UTR 0.20 TCGA-DK-A6B6-01 1 40035345 40035345 G A PABPC4 Silent p.V220V 0.17 TCGA-DK-A6B6-01 1 42922574 42922574 C T PPCS Missense_Mutation p.S113L 0.42 tolerated(0.18) benign(0.003) TCGA-DK-A6B6-01 1 43393372 43393372 G A SLC2A1 Silent p.L394L 0.18 TCGA-DK-A6B6-01 1 46654550 46654550 C G POMGNT1 Silent p.L696L 0.26 TCGA-DK-A6B6-01 1 46972801 46972801 C T DMBX1 Missense_Mutation p.S40L 0.06 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 1 52991561 52991561 G A ZCCHC11 Missense_Mutation p.S131L 0.24 tolerated_low_confidence(0.15) benign(0.001) TCGA-DK-A6B6-01 1 53236939 53236939 C G ZYG11B Silent p.L148L 0.20 TCGA-DK-A6B6-01 1 54692813 54692813 C A SSBP3 Missense_Mutation p.M386I 0.23 deleterious_low_confidence(0.02) benign(0.013) TCGA-DK-A6B6-01 1 55070016 55070016 C T ACOT11 Intron 0.42 TCGA-DK-A6B6-01 1 59004653 59004653 G A OMA1 Missense_Mutation p.S105L 0.42 tolerated(0.45) benign(0.004) TCGA-DK-A6B6-01 1 59042553 59042553 C G TACSTD2 Silent p.P92P 0.50 TCGA-DK-A6B6-01 1 6272368 6272368 C T RNF207 Silent p.L458L 0.41 TCGA-DK-A6B6-01 1 6605202 6605202 C G NOL9 Missense_Mutation p.L261F 0.17 deleterious(0.04) probably_damaging(0.937) TCGA-DK-A6B6-01 1 6639059 6639059 C T TAS1R1 Silent p.S647S 0.25 TCGA-DK-A6B6-01 1 6640684 6640684 C T ZBTB48 Silent p.F5F 0.44 TCGA-DK-A6B6-01 1 67442291 67442291 C T MIER1 Missense_Mutation p.S372L 0.22 deleterious(0) possibly_damaging(0.481) TCGA-DK-A6B6-01 1 84961961 84961961 C T RPF1 Nonsense_Mutation p.Q306* 0.28 TCGA-DK-A6B6-01 1 85724285 85724285 C T C1orf52 Missense_Mutation p.E133K 0.42 deleterious(0) probably_damaging(0.987) TCGA-DK-A6B6-01 1 92224293 92224293 C T TGFBR3 Silent p.L87L 0.13 TCGA-DK-A6B6-01 1 95392600 95392600 G A CNN3 5'UTR 0.27 TCGA-DK-A6B6-01 1 95657358 95657358 C G TMEM56 Missense_Mutation p.I242M 0.18 tolerated(0.11) benign(0.027) TCGA-DK-A6B6-01 1 99161081 99161081 C T SNX7 Missense_Mutation p.S216F 0.38 deleterious(0.04) possibly_damaging(0.637) TCGA-DK-A6B6-01 20 19956181 19956181 C T RIN2 Silent p.F553F 0.39 TCGA-DK-A6B6-01 20 20582438 20582438 G A RALGAPA2 Silent p.L697L 0.46 TCGA-DK-A6B6-01 20 23472337 23472337 C T CST8 Silent p.L11L 0.31 TCGA-DK-A6B6-01 20 30193467 30193467 G A ID1 Missense_Mutation p.E93K 0.50 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B6-01 20 3027133 3027133 C T MRPS26 Silent p.N109N 0.21 TCGA-DK-A6B6-01 20 30898963 30898963 G A KIF3B Silent p.E461E 0.48 TCGA-DK-A6B6-01 20 34618459 34618459 G A CNBD2 Silent p.T536T 0.37 TCGA-DK-A6B6-01 20 34828416 34828416 C T AAR2 Missense_Mutation p.S209L 0.25 deleterious(0.01) possibly_damaging(0.85) TCGA-DK-A6B6-01 20 3670736 3670736 G C SIGLEC1 Silent p.V1589V 0.43 TCGA-DK-A6B6-01 20 37174926 37174926 C T RALGAPB Missense_Mutation p.P919S 0.37 deleterious(0.01) possibly_damaging(0.487) TCGA-DK-A6B6-01 20 3759867 3759867 C T SPEF1 Silent p.R118R 0.38 TCGA-DK-A6B6-01 20 3766646 3766646 G A CENPB Missense_Mutation p.S162L 0.69 tolerated(0.25) unknown(0) TCGA-DK-A6B6-01 20 3870272 3870272 C A PANK2 Silent p.V175V 0.52 TCGA-DK-A6B6-01 20 39831062 39831062 C T ZHX3 Missense_Mutation p.R832Q 0.27 tolerated(0.09) benign(0.011) TCGA-DK-A6B6-01 20 39832404 39832404 G C ZHX3 Missense_Mutation p.Q385E 0.42 deleterious(0.01) possibly_damaging(0.9) TCGA-DK-A6B6-01 20 43385641 43385641 G A RIMS4 Silent p.I164I 0.37 TCGA-DK-A6B6-01 20 44433831 44433831 C T DNTTIP1 Missense_Mutation p.S217F 0.39 deleterious(0.03) benign(0.087) TCGA-DK-A6B6-01 20 44698875 44698875 C T NCOA5 Missense_Mutation p.M113I 0.41 tolerated(0.87) unknown(0) TCGA-DK-A6B6-01 20 47886897 47886897 G A ZNFX1 Silent p.L484L 0.23 TCGA-DK-A6B6-01 20 50139941 50139941 G A NFATC2 Missense_Mutation p.S280L 0.33 deleterious(0.03) benign(0.001) TCGA-DK-A6B6-01 20 51870545 51870545 C T TSHZ2 Missense_Mutation p.S183F 0.40 tolerated(0.64) benign(0.406) TCGA-DK-A6B6-01 20 61537196 61537196 G A DIDO1 Intron 0.39 TCGA-DK-A6B6-01 20 61572851 61572851 C T GID8 5'UTR 0.23 TCGA-DK-A6B6-01 20 62173800 62173800 G A SRMS Silent p.I260I 0.23 TCGA-DK-A6B6-01 20 62194406 62194406 G A HELZ2 Silent p.F1923F 0.39 TCGA-DK-A6B6-01 21 10969115 10969115 C T TPTE Missense_Mutation p.E45K 0.17 tolerated(0.21) possibly_damaging(0.787) TCGA-DK-A6B6-01 21 16339590 16339590 G T NRIP1 Silent p.G308G 0.32 TCGA-DK-A6B6-01 21 30419526 30419526 C T USP16 Missense_Mutation p.S632L 0.46 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 21 34922529 34922529 C T SON Missense_Mutation p.S331L 0.41 benign(0.307) TCGA-DK-A6B6-01 21 34929569 34929569 G C SON Missense_Mutation p.E2090Q 0.49 unknown(0) TCGA-DK-A6B6-01 21 40559035 40559035 C T BRWD1 Missense_Mutation p.E2294K 0.53 deleterious_low_confidence(0.01) benign(0.023) TCGA-DK-A6B6-01 21 40646305 40646305 G C BRWD1 Missense_Mutation p.I413M 0.51 tolerated(0.13) benign(0.004) TCGA-DK-A6B6-01 21 42762623 42762623 G A MX2 Silent p.R288R 0.50 TCGA-DK-A6B6-01 21 45194071 45194071 C G CSTB 3'UTR 0.06 TCGA-DK-A6B6-01 21 45736388 45736388 C T PFKL Missense_Mutation p.S306F 0.60 deleterious(0) probably_damaging(0.929) TCGA-DK-A6B6-01 21 46306746 46306746 G A ITGB2 Missense_Mutation p.L718F 0.39 tolerated(0.08) benign(0.078) TCGA-DK-A6B6-01 21 46932166 46932166 G T COL18A1 Nonsense_Mutation p.E1472* 0.65 TCGA-DK-A6B6-01 21 47783764 47783764 G A PCNT Missense_Mutation p.E842K 0.62 possibly_damaging(0.636) TCGA-DK-A6B6-01 21 47852111 47852111 G C PCNT Missense_Mutation p.Q2911H 0.43 possibly_damaging(0.781) TCGA-DK-A6B6-01 22 16449149 16449149 G A OR11H1 Missense_Mutation p.S219L 0.22 deleterious(0.01) benign(0.12) TCGA-DK-A6B6-01 22 18893891 18893891 G A DGCR6 Missense_Mutation p.E2K 0.40 deleterious_low_confidence(0.02) benign(0.153) TCGA-DK-A6B6-01 22 19431670 19431670 G A C22orf39 3'UTR 0.39 TCGA-DK-A6B6-01 22 19951112 19951112 C T COMT Nonsense_Mutation p.Q105* 0.28 TCGA-DK-A6B6-01 22 19959443 19959443 G C ARVCF Missense_Mutation p.S916C 0.32 tolerated(0.06) benign(0.285) TCGA-DK-A6B6-01 22 19960349 19960349 G A ARVCF Missense_Mutation p.S851L 0.38 tolerated(0.1) possibly_damaging(0.575) TCGA-DK-A6B6-01 22 20106566 20106566 G T RANBP1 Nonsense_Mutation p.E16* 0.33 TCGA-DK-A6B6-01 22 20760364 20760364 C T ZNF74 Silent p.L347L 0.34 TCGA-DK-A6B6-01 22 20783871 20783871 G A SCARF2 Missense_Mutation p.S459L 0.24 tolerated(0.22) benign(0.096) TCGA-DK-A6B6-01 22 20891401 20891401 C T MED15 Intron 0.34 TCGA-DK-A6B6-01 22 23596140 23596140 C G BCR Silent p.V478V 0.46 TCGA-DK-A6B6-01 22 26868343 26868343 G A HPS4 Silent p.F142F 0.32 TCGA-DK-A6B6-01 22 27021530 27021530 G A CRYBA4 Missense_Mutation p.G82S 0.14 tolerated(0.06) possibly_damaging(0.538) TCGA-DK-A6B6-01 22 30660086 30660086 G A OSM Missense_Mutation p.S182L 0.32 tolerated(0.21) benign(0.02) TCGA-DK-A6B6-01 22 31289499 31289499 G A OSBP2 Silent p.R680R 0.33 TCGA-DK-A6B6-01 22 31333818 31333818 C G MORC2 Missense_Mutation p.W389C 0.27 tolerated(0.25) probably_damaging(0.977) TCGA-DK-A6B6-01 22 31741457 31741457 G A PATZ1 Silent p.L44L 0.27 TCGA-DK-A6B6-01 22 36685341 36685341 G A MYH9 Silent p.L1449L 0.30 TCGA-DK-A6B6-01 22 36908628 36908628 G A EIF3D Missense_Mutation p.R410C 0.09 deleterious(0.03) possibly_damaging(0.741) TCGA-DK-A6B6-01 22 38211178 38211178 G A GCAT Missense_Mutation p.D234N 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 22 39474934 39474934 C T APOBEC3G Intron 0.33 TCGA-DK-A6B6-01 22 40658093 40658093 C T TNRC6B Missense_Mutation p.P125S 0.15 tolerated(0.37) benign(0.081) TCGA-DK-A6B6-01 22 40756423 40756423 G A ADSL Missense_Mutation p.G240E 0.32 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 22 41616856 41616856 C T L3MBTL2 Silent p.I279I 0.31 TCGA-DK-A6B6-01 22 42180422 42180422 C T MEI1 Missense_Mutation p.S1056L 0.30 tolerated(1) benign(0.12) TCGA-DK-A6B6-01 22 42180660 42180660 C G MEI1 Missense_Mutation p.S1073C 0.26 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B6-01 22 42991566 42991566 G A POLDIP3 Nonsense_Mutation p.R290* 0.35 TCGA-DK-A6B6-01 22 44489833 44489833 G C PARVB Missense_Mutation p.K79N 0.32 deleterious(0.04) possibly_damaging(0.726) TCGA-DK-A6B6-01 22 45574572 45574572 G T NUP50 Missense_Mutation p.G265V 0.26 tolerated(0.05) benign(0.234) TCGA-DK-A6B6-01 22 45574610 45574610 G A NUP50 Missense_Mutation p.D278N 0.34 tolerated(0.08) benign(0.049) TCGA-DK-A6B6-01 22 45755816 45755816 C G SMC1B Missense_Mutation p.E911Q 0.12 tolerated(0.29) benign(0.111) TCGA-DK-A6B6-01 22 50720304 50720304 G A PLXNB2 Silent p.V1108V 0.25 TCGA-DK-A6B6-01 22 50727979 50727979 G A PLXNB2 Silent p.F345F 0.32 TCGA-DK-A6B6-01 22 50893124 50893124 G A SBF1 Silent p.F1620F 0.32 TCGA-DK-A6B6-01 22 50901314 50901314 G A SBF1 Silent p.V651V 0.32 TCGA-DK-A6B6-01 22 50943035 50943035 G C LMF2 Missense_Mutation p.P520R 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 2 100182052 100182052 C T AFF3 Missense_Mutation p.E1031K 0.17 deleterious(0) possibly_damaging(0.864) TCGA-DK-A6B6-01 2 105977627 105977627 G A FHL2 3'UTR 0.58 TCGA-DK-A6B6-01 2 11053024 11053024 G A KCNF1 Missense_Mutation p.E158K 0.37 tolerated(0.6) benign(0.036) TCGA-DK-A6B6-01 2 113885142 113885142 C T IL1RN Intron 0.56 TCGA-DK-A6B6-01 2 122520632 122520632 C T TSN Missense_Mutation p.S142L 0.64 tolerated(0.75) benign(0.028) TCGA-DK-A6B6-01 2 128466262 128466262 C T WDR33 Missense_Mutation p.R1257Q 0.57 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-DK-A6B6-01 2 132509129 132509129 C T C2orf27A 5'UTR 0.61 TCGA-DK-A6B6-01 2 133174718 133174718 C T GPR39 Silent p.L35L 0.65 TCGA-DK-A6B6-01 2 136594118 136594118 C T LCT Missense_Mutation p.E208K 0.67 tolerated(0.13) benign(0.036) TCGA-DK-A6B6-01 2 141110549 141110549 C G LRP1B Missense_Mutation p.E3875Q 0.55 possibly_damaging(0.728) TCGA-DK-A6B6-01 2 149803478 149803478 G C KIF5C Missense_Mutation p.E219Q 0.60 tolerated(0.2) benign(0.015) TCGA-DK-A6B6-01 2 149987456 149987456 C T LYPD6B 5'UTR 0.63 TCGA-DK-A6B6-01 2 151343784 151343784 C T RND3 Missense_Mutation p.E50K 0.48 deleterious(0.01) benign(0.05) TCGA-DK-A6B6-01 2 152127335 152127335 G A NMI Nonsense_Mutation p.Q266* 0.71 TCGA-DK-A6B6-01 2 157182448 157182448 G C NR4A2 Silent p.L535L 0.61 TCGA-DK-A6B6-01 2 161052922 161052922 G A ITGB6 Missense_Mutation p.H51Y 0.64 deleterious(0.02) benign(0.003) TCGA-DK-A6B6-01 2 171710424 171710424 C G GAD1 Silent p.L435L 0.66 TCGA-DK-A6B6-01 2 172582534 172582534 C G DYNC1I2 Missense_Mutation p.S238C 0.74 tolerated(0.23) benign(0.003) TCGA-DK-A6B6-01 2 17697673 17697673 G A RAD51AP2 Silent p.F670F 0.09 TCGA-DK-A6B6-01 2 179450037 179450037 G C TTN Missense_Mutation p.I21478M 0.63 TCGA-DK-A6B6-01 2 192815005 192815005 C T TMEFF2 3'UTR 0.69 TCGA-DK-A6B6-01 2 198338485 198338485 C G COQ10B Missense_Mutation p.S185C 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 2 202141606 202141606 C G CASP8 Missense_Mutation p.I298M 0.42 deleterious(0.01) possibly_damaging(0.809) TCGA-DK-A6B6-01 2 209153527 209153527 C T PIKFYVE Missense_Mutation p.S299F 0.65 deleterious(0.01) probably_damaging(0.999) TCGA-DK-A6B6-01 2 209302336 209302336 C G PTH2R Missense_Mutation p.P85A 0.59 tolerated(0.07) benign(0.269) TCGA-DK-A6B6-01 2 215632218 215632218 G C BARD1 Missense_Mutation p.S519C 0.54 deleterious(0) probably_damaging(0.992) TCGA-DK-A6B6-01 2 219498833 219498833 G A PLCD4 Missense_Mutation p.E538K 0.64 tolerated(0.29) possibly_damaging(0.676) TCGA-DK-A6B6-01 2 233394809 233394809 C T CHRND Silent p.I260I 0.17 TCGA-DK-A6B6-01 2 234669392 234669392 C T UGT1A8 Intron 0.57 TCGA-DK-A6B6-01 2 234959412 234959412 C G SPP2 5'UTR 0.64 TCGA-DK-A6B6-01 2 234959713 234959713 C T SPP2 Missense_Mutation p.R62W 0.63 deleterious(0) probably_damaging(0.997) TCGA-DK-A6B6-01 2 241530381 241530381 G C CAPN10 Missense_Mutation p.Q141H 0.49 tolerated(0.16) benign(0.104) TCGA-DK-A6B6-01 2 24205879 24205879 C T UBXN2A Missense_Mutation p.S134L 0.44 deleterious(0) probably_damaging(0.983) TCGA-DK-A6B6-01 2 24261791 24261791 G A C2orf44 Missense_Mutation p.H192Y 0.47 tolerated(1) possibly_damaging(0.804) TCGA-DK-A6B6-01 2 25457184 25457184 G A DNMT3A Silent p.L901L 0.35 TCGA-DK-A6B6-01 2 27606329 27606329 C G PPM1G Missense_Mutation p.E369Q 0.16 deleterious(0.01) benign(0.106) TCGA-DK-A6B6-01 2 32626655 32626655 C G BIRC6 Missense_Mutation p.S461C 0.41 possibly_damaging(0.707) TCGA-DK-A6B6-01 2 32626664 32626664 C T BIRC6 Missense_Mutation p.S464L 0.43 probably_damaging(0.977) TCGA-DK-A6B6-01 2 38908553 38908553 C T GALM Silent p.V159V 0.32 TCGA-DK-A6B6-01 2 43779424 43779424 G A THADA Missense_Mutation p.S910F 0.47 deleterious(0) probably_damaging(0.985) TCGA-DK-A6B6-01 2 43924454 43924454 C T PLEKHH2 Missense_Mutation p.S216L 0.18 tolerated(0.26) benign(0) TCGA-DK-A6B6-01 2 43953477 43953477 G C PLEKHH2 Missense_Mutation p.D870H 0.36 deleterious(0) benign(0.362) TCGA-DK-A6B6-01 2 44209417 44209417 C G LRPPRC Missense_Mutation p.K102N 0.23 deleterious(0) probably_damaging(0.912) TCGA-DK-A6B6-01 2 48874023 48874023 C G STON1-GTF2A1L Missense_Mutation p.L978V 0.36 tolerated(0.3) probably_damaging(0.999) TCGA-DK-A6B6-01 2 55473543 55473543 C T MTIF2 Missense_Mutation p.E346K 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-DK-A6B6-01 2 55473552 55473552 C G MTIF2 Missense_Mutation p.E343Q 0.38 deleterious(0.03) probably_damaging(1) TCGA-DK-A6B6-01 2 55920859 55920859 G T PNPT1 Missense_Mutation p.Q34K 0.32 tolerated_low_confidence(0.14) benign(0.055) TCGA-DK-A6B6-01 2 61522426 61522426 C A USP34 Splice_Site p.X1419_splice 0.35 TCGA-DK-A6B6-01 2 62103250 62103250 G A CCT4 Silent p.L299L 0.30 TCGA-DK-A6B6-01 2 62934306 62934306 C G EHBP1 5'UTR 0.28 TCGA-DK-A6B6-01 2 70315024 70315024 C T PCBP1 Missense_Mutation p.S50L 0.42 deleterious(0.04) benign(0.237) TCGA-DK-A6B6-01 2 71357770 71357770 C T MPHOSPH10 5'UTR 0.74 TCGA-DK-A6B6-01 2 71591368 71591368 C T ZNF638 Missense_Mutation p.S568L 0.34 tolerated(0.12) benign(0.006) TCGA-DK-A6B6-01 2 73518484 73518484 C T EGR4 3'UTR 0.60 TCGA-DK-A6B6-01 2 73518551 73518551 C T EGR4 3'UTR 0.26 TCGA-DK-A6B6-01 2 73679098 73679098 C T ALMS1 Missense_Mutation p.S1814F 0.43 benign(0.211) TCGA-DK-A6B6-01 2 74074826 74074826 C T STAMBP Missense_Mutation p.P230S 0.22 tolerated(0.39) benign(0.231) TCGA-DK-A6B6-01 2 74605327 74605327 G T DCTN1 Missense_Mutation p.L27M 0.15 tolerated(0.06) benign(0.189) TCGA-DK-A6B6-01 2 74689268 74689268 G A MOGS Nonsense_Mutation p.Q550* 0.20 TCGA-DK-A6B6-01 2 74734008 74734008 C T PCGF1 Missense_Mutation p.C68Y 0.53 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 2 74743161 74743161 C T TLX2 Silent p.L234L 0.44 TCGA-DK-A6B6-01 2 74783531 74783531 G C DOK1 Missense_Mutation p.E246Q 0.50 deleterious(0) possibly_damaging(0.598) TCGA-DK-A6B6-01 2 75280779 75280779 C T TACR1 Missense_Mutation p.G230R 0.58 tolerated(0.06) possibly_damaging(0.767) TCGA-DK-A6B6-01 2 79878723 79878723 C A CTNNA2 Missense_Mutation p.P14H 0.41 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B6-01 2 84806795 84806795 C T DNAH6 Nonsense_Mutation p.Q741* 0.18 TCGA-DK-A6B6-01 2 85622043 85622043 G A CAPG Silent p.F340F 0.09 TCGA-DK-A6B6-01 2 85777174 85777174 C T GGCX Silent p.V720V 0.46 TCGA-DK-A6B6-01 2 85778620 85778620 C G GGCX Missense_Mutation p.E575Q 0.17 tolerated(0.37) benign(0.003) TCGA-DK-A6B6-01 2 85778707 85778707 C T GGCX Missense_Mutation p.E546K 0.19 tolerated(0.19) possibly_damaging(0.893) TCGA-DK-A6B6-01 2 86292644 86292644 C T POLR1A Intron 0.21 TCGA-DK-A6B6-01 2 8919253 8919253 G A KIDINS220 Missense_Mutation p.S796L 0.48 deleterious(0) possibly_damaging(0.861) TCGA-DK-A6B6-01 2 9347222 9347222 C A ASAP2 5'UTR 0.38 TCGA-DK-A6B6-01 2 9616125 9616125 C T IAH1 Nonsense_Mutation p.Q31* 0.38 TCGA-DK-A6B6-01 2 96809639 96809639 G A DUSP2 Missense_Mutation p.R290C 0.51 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 3 101311591 101311591 C T PCNP Silent p.D177D 0.36 TCGA-DK-A6B6-01 3 101401690 101401690 G A RPL24 Missense_Mutation p.A85V 0.30 tolerated(0.05) benign(0.011) TCGA-DK-A6B6-01 3 119121232 119121232 G C ARHGAP31 Missense_Mutation p.E545Q 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-DK-A6B6-01 3 119528977 119528977 G C NR1I2 Missense_Mutation p.K128N 0.31 tolerated(0.33) probably_damaging(1) TCGA-DK-A6B6-01 3 120315260 120315260 C T NDUFB4 Silent p.L18L 0.34 TCGA-DK-A6B6-01 3 120321162 120321162 C T NDUFB4 3'UTR 0.28 TCGA-DK-A6B6-01 3 120401083 120401083 C T HGD 5'UTR 0.38 TCGA-DK-A6B6-01 3 121414660 121414660 G A GOLGB1 Silent p.L1570L 0.35 TCGA-DK-A6B6-01 3 123333164 123333164 C G MYLK Missense_Mutation p.D1845H 0.30 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 3 12545071 12545071 G C TSEN2 Missense_Mutation p.E207Q 0.26 tolerated(0.4) benign(0.063) TCGA-DK-A6B6-01 3 12633230 12633230 G A RAF1 Silent p.F390F 0.36 TCGA-DK-A6B6-01 3 127391827 127391827 C T ABTB1 5'UTR 0.38 TCGA-DK-A6B6-01 3 128813826 128813826 C T RAB43 Intron 0.24 TCGA-DK-A6B6-01 3 128813903 128813903 G A RAB43 Missense_Mutation p.S105F 0.34 deleterious(0) probably_damaging(0.991) TCGA-DK-A6B6-01 3 129034285 129034285 G A H1FX Missense_Mutation p.S154F 0.29 deleterious(0.03) benign(0.005) TCGA-DK-A6B6-01 3 130435391 130435391 G A PIK3R4 Missense_Mutation p.S727F 0.25 deleterious(0.05) possibly_damaging(0.871) TCGA-DK-A6B6-01 3 132319264 132319264 C T ACKR4 Missense_Mutation p.S8L 0.32 tolerated(0.12) benign(0.221) TCGA-DK-A6B6-01 3 133114727 133114727 G A TMEM108 Missense_Mutation p.R542H 0.30 deleterious(0.01) possibly_damaging(0.636) TCGA-DK-A6B6-01 3 136699342 136699342 C T IL20RB Silent p.L41L 0.36 TCGA-DK-A6B6-01 3 137881101 137881101 G A DBR1 Missense_Mutation p.S422F 0.33 deleterious(0) probably_damaging(0.977) TCGA-DK-A6B6-01 3 142048295 142048297 GAG AA XRN1 Frame_Shift_Del p.R1464Gfs*6 0.34 TCGA-DK-A6B6-01 3 142215323 142215323 C G ATR Missense_Mutation p.Q1926H 0.46 deleterious(0.01) probably_damaging(1) TCGA-DK-A6B6-01 3 14862489 14862489 G T FGD5 Silent p.L637L 0.34 TCGA-DK-A6B6-01 3 14863080 14863080 G C FGD5 Missense_Mutation p.Q834H 0.41 deleterious(0.04) possibly_damaging(0.815) TCGA-DK-A6B6-01 3 148847501 148847501 G A HPS3 5'UTR 0.42 TCGA-DK-A6B6-01 3 15303689 15303689 G A SH3BP5 Silent p.L201L 0.32 TCGA-DK-A6B6-01 3 154861348 154861348 G A MME Silent p.E435E 0.36 TCGA-DK-A6B6-01 3 155200690 155200690 G C PLCH1 Nonsense_Mutation p.S1050* 0.37 TCGA-DK-A6B6-01 3 156396116 156396116 C T TIPARP Silent p.L210L 0.41 TCGA-DK-A6B6-01 3 170811656 170811656 G A TNIK Missense_Mutation p.S898L 0.45 tolerated(0.35) benign(0.042) TCGA-DK-A6B6-01 3 172080474 172080474 C T FNDC3B Silent p.F949F 0.30 TCGA-DK-A6B6-01 3 179306756 179306756 G A MRPL47 Silent p.I219I 0.29 TCGA-DK-A6B6-01 3 184033282 184033282 C T EIF4G1 5'UTR 0.25 TCGA-DK-A6B6-01 3 186503736 186503736 G A EIF4A2 Missense_Mutation p.G138E 0.27 deleterious(0) probably_damaging(0.959) TCGA-DK-A6B6-01 3 186504579 186504579 G C EIF4A2 Intron 0.44 TCGA-DK-A6B6-01 3 194118121 194118121 C G GP5 Silent p.L297L 0.32 TCGA-DK-A6B6-01 3 197423822 197423822 C T KIAA0226 Intron 0.37 TCGA-DK-A6B6-01 3 23959451 23959451 C T RPL15 Missense_Mutation p.S34F 0.34 deleterious(0.04) benign(0.042) TCGA-DK-A6B6-01 3 25773850 25773850 G A NGLY1 Missense_Mutation p.S462L 0.30 deleterious(0) possibly_damaging(0.819) TCGA-DK-A6B6-01 3 31574504 31574504 C A STT3B Nonsense_Mutation p.S5* 0.31 TCGA-DK-A6B6-01 3 36874735 36874735 G T TRANK1 Nonsense_Mutation p.C2069* 0.29 TCGA-DK-A6B6-01 3 37033278 37033278 G A EPM2AIP1 Silent p.L431L 0.31 TCGA-DK-A6B6-01 3 37163021 37163021 C T LRRFIP2 Missense_Mutation p.E98K 0.37 deleterious(0.03) benign(0.008) TCGA-DK-A6B6-01 3 38437034 38437034 C T XYLB Missense_Mutation p.H444Y 0.34 tolerated(0.19) benign(0.009) TCGA-DK-A6B6-01 3 39453924 39453924 C T RPSA 3'UTR 0.36 TCGA-DK-A6B6-01 3 41877425 41877425 G A ULK4 Silent p.F565F 0.23 TCGA-DK-A6B6-01 3 42251519 42251519 A C TRAK1 Intron 0.23 TCGA-DK-A6B6-01 3 44816879 44816879 G C KIF15 Missense_Mutation p.E66Q 0.33 deleterious(0) possibly_damaging(0.85) TCGA-DK-A6B6-01 3 44893819 44893819 C T KIF15 Silent p.V1364V 0.26 TCGA-DK-A6B6-01 3 45636841 45636841 C T LIMD1 Missense_Mutation p.S157F 0.43 deleterious(0.02) benign(0.246) TCGA-DK-A6B6-01 3 45988917 45988917 C A CXCR6 Nonsense_Mutation p.S315* 0.44 TCGA-DK-A6B6-01 3 46008455 46008455 G A FYCO1 Nonsense_Mutation p.Q791* 0.35 TCGA-DK-A6B6-01 3 47033343 47033343 G A NBEAL2 Missense_Mutation p.M313I 0.32 tolerated(0.17) benign(0.006) TCGA-DK-A6B6-01 3 47098519 47098519 G A SETD2 Missense_Mutation p.S2252F 0.24 deleterious(0.03) benign(0.05) TCGA-DK-A6B6-01 3 47142964 47142964 G A SETD2 Nonsense_Mutation p.Q1667* 0.33 TCGA-DK-A6B6-01 3 47894729 47894729 G A MAP4 Silent p.L1125L 0.38 TCGA-DK-A6B6-01 3 47894742 47894742 G A MAP4 Missense_Mutation p.S1121L 0.36 tolerated(0.12) benign(0.334) TCGA-DK-A6B6-01 3 47896810 47896810 G A MAP4 Silent p.F1063F 0.30 TCGA-DK-A6B6-01 3 48462263 48462263 G A PLXNB1 Missense_Mutation p.S638F 0.34 tolerated(0.1) probably_damaging(0.965) TCGA-DK-A6B6-01 3 48726174 48726174 G A IP6K2 Silent p.F271F 0.20 TCGA-DK-A6B6-01 3 48732415 48732415 G A IP6K2 Intron 0.44 TCGA-DK-A6B6-01 3 49049837 49049837 C T WDR6 Silent p.L320L 0.33 TCGA-DK-A6B6-01 3 50138067 50138067 C T RBM5 Intron 0.47 TCGA-DK-A6B6-01 3 50231306 50231306 C A GNAT1 Silent p.L190L 0.04 TCGA-DK-A6B6-01 3 50290516 50290516 G C GNAI2 Missense_Mutation p.D122H 0.40 deleterious(0.05) possibly_damaging(0.55) TCGA-DK-A6B6-01 3 50336726 50336726 C T NAT6 5'UTR 0.38 TCGA-DK-A6B6-01 3 51436173 51436173 G A VPRBP 3'UTR 0.20 TCGA-DK-A6B6-01 3 5229559 5229559 C A AC026202.1 Nonsense_Mutation p.E142* 0.29 TCGA-DK-A6B6-01 3 52557301 52557301 G A STAB1 Missense_Mutation p.E2362K 0.38 tolerated(0.14) benign(0.119) TCGA-DK-A6B6-01 3 52558849 52558849 C G NT5DC2 Missense_Mutation p.E466Q 0.29 deleterious(0.02) possibly_damaging(0.467) TCGA-DK-A6B6-01 3 52836817 52836817 G A ITIH3 Silent p.E568E 0.41 TCGA-DK-A6B6-01 3 53217509 53217509 C G PRKCD Missense_Mutation p.F233L 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 3 53778808 53778808 G - CACNA1D Frame_Shift_Del p.V1008Sfs*32 0.11 TCGA-DK-A6B6-01 3 53883693 53883693 G C IL17RB Missense_Mutation p.E33Q 0.35 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 3 54930698 54930698 G A CACNA2D3 Intron 0.40 TCGA-DK-A6B6-01 3 55508420 55508420 G A WNT5A Missense_Mutation p.S210F 0.30 deleterious(0) benign(0.213) TCGA-DK-A6B6-01 3 57613858 57613858 G A DENND6A 3'UTR 0.25 TCGA-DK-A6B6-01 3 58133930 58133930 C T FLNB Intron 0.43 TCGA-DK-A6B6-01 3 58134041 58134041 C T FLNB Missense_Mutation p.S1977F 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 3 58134449 58134449 C T FLNB Silent p.N2018N 0.25 TCGA-DK-A6B6-01 3 66444594 66444594 G A LRIG1 Silent p.C446C 0.33 TCGA-DK-A6B6-01 3 77684101 77684101 C T ROBO2 Nonsense_Mutation p.Q1297* 0.33 TCGA-DK-A6B6-01 3 8590521 8590521 G A LMCD1 Missense_Mutation p.E219K 0.37 tolerated(0.87) benign(0.164) TCGA-DK-A6B6-01 3 9803411 9803411 C T CAMK1 Missense_Mutation p.E154K 0.31 tolerated(0.26) benign(0.139) TCGA-DK-A6B6-01 3 9845655 9845655 C T ARPC4 Silent p.V172V 0.30 TCGA-DK-A6B6-01 3 9885262 9885262 G C RPUSD3 Missense_Mutation p.S50C 0.26 deleterious(0.02) possibly_damaging(0.503) TCGA-DK-A6B6-01 4 100844301 100844301 G A DNAJB14 Missense_Mutation p.T116M 0.50 deleterious(0.02) benign(0.031) TCGA-DK-A6B6-01 4 10444949 10444949 G A ZNF518B Nonsense_Mutation p.Q1002* 0.17 TCGA-DK-A6B6-01 4 107246142 107246142 G C AIMP1 Missense_Mutation p.M16I 0.39 tolerated_low_confidence(0.36) benign(0.045) TCGA-DK-A6B6-01 4 114254328 114254328 G C ANK2 Missense_Mutation p.D1115H 0.13 possibly_damaging(0.89) TCGA-DK-A6B6-01 4 122068306 122068306 G A TNIP3 Silent p.F288F 0.10 TCGA-DK-A6B6-01 4 122589652 122589652 G C ANXA5 Missense_Mutation p.L312V 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 4 129764159 129764159 C G JADE1 Missense_Mutation p.S35C 0.38 deleterious(0.02) possibly_damaging(0.726) TCGA-DK-A6B6-01 4 148993235 148993235 C T ARHGAP10 3'UTR 0.46 TCGA-DK-A6B6-01 4 148993303 148993303 C T ARHGAP10 3'UTR 0.21 TCGA-DK-A6B6-01 4 156828902 156828902 C T TDO2 Silent p.L87L 0.33 TCGA-DK-A6B6-01 4 15706551 15706551 G T BST1 Intron 0.24 TCGA-DK-A6B6-01 4 17516793 17516793 G C CLRN2 5'UTR 0.33 TCGA-DK-A6B6-01 4 17805577 17805577 G A DCAF16 Missense_Mutation p.S63F 0.19 deleterious_low_confidence(0) benign(0.227) TCGA-DK-A6B6-01 4 1809513 1809513 C G FGFR3 3'UTR 0.26 TCGA-DK-A6B6-01 4 187084747 187084747 C T FAM149A Missense_Mutation p.P335S 0.28 tolerated(0.1) possibly_damaging(0.742) TCGA-DK-A6B6-01 4 187521067 187521067 G A FAT1 Missense_Mutation p.P4030S 0.26 benign(0.007) TCGA-DK-A6B6-01 4 187524560 187524560 G C FAT1 Nonsense_Mutation p.S3707* 0.21 TCGA-DK-A6B6-01 4 187540046 187540046 G A FAT1 Missense_Mutation p.S2565L 0.21 benign(0.063) TCGA-DK-A6B6-01 4 25146637 25146637 T C SEPSECS Missense_Mutation p.K308R 0.15 tolerated(0.17) benign(0.008) TCGA-DK-A6B6-01 4 2696719 2696719 C T FAM193A Missense_Mutation p.P756S 0.16 tolerated(0.2) probably_damaging(0.994) TCGA-DK-A6B6-01 4 2746179 2746179 G C TNIP2 Missense_Mutation p.Q321E 0.37 deleterious(0) benign(0.257) TCGA-DK-A6B6-01 4 37903995 37903995 C T TBC1D1 Silent p.I93I 0.29 TCGA-DK-A6B6-01 4 38682252 38682252 C T KLF3 Silent p.L2L 0.33 TCGA-DK-A6B6-01 4 38776787 38776787 G A TLR10 Missense_Mutation p.S142L 0.38 tolerated(0.74) benign(0.006) TCGA-DK-A6B6-01 4 38831134 38831134 G C TLR6 5'UTR 0.07 TCGA-DK-A6B6-01 4 40800815 40800815 C T NSUN7 Nonsense_Mutation p.Q432* 0.16 TCGA-DK-A6B6-01 4 437485 437485 G A ZNF721 Silent p.V257V 0.27 TCGA-DK-A6B6-01 4 44700657 44700657 G C GUF1 Missense_Mutation p.D657H 0.40 deleterious(0) probably_damaging(0.92) TCGA-DK-A6B6-01 4 46737063 46737063 G C COX7B2 Missense_Mutation p.F49L 0.25 deleterious(0.03) possibly_damaging(0.597) TCGA-DK-A6B6-01 4 47428060 47428060 G C GABRB1 3'UTR 0.21 TCGA-DK-A6B6-01 4 57857008 57857008 C T POLR2B Missense_Mutation p.P63S 0.22 tolerated(0.56) probably_damaging(0.911) TCGA-DK-A6B6-01 4 66197802 66197802 G T EPHA5 Missense_Mutation p.A966D 0.10 tolerated(0.18) benign(0.085) TCGA-DK-A6B6-01 4 6642607 6642607 C T MRFAP1 Silent p.I6I 0.22 TCGA-DK-A6B6-01 4 6642650 6642650 G A MRFAP1 Missense_Mutation p.E21K 0.06 tolerated(0.06) probably_damaging(0.994) TCGA-DK-A6B6-01 4 6711006 6711006 G A MRFAP1L1 Silent p.L117L 0.27 TCGA-DK-A6B6-01 4 69512827 69512827 C G UGT2B15 Missense_Mutation p.D530H 0.28 deleterious(0) possibly_damaging(0.831) TCGA-DK-A6B6-01 4 76440731 76440731 G A THAP6 Silent p.L23L 0.37 TCGA-DK-A6B6-01 4 77082892 77082892 C T SCARB2 Missense_Mutation p.E471K 0.14 deleterious(0.01) possibly_damaging(0.833) TCGA-DK-A6B6-01 4 78087038 78087038 C T CCNG2 Silent p.F332F 0.24 TCGA-DK-A6B6-01 4 79430064 79430064 C T FRAS1 Silent p.F3228F 0.38 TCGA-DK-A6B6-01 4 82368724 82368724 G A RASGEF1B Silent p.L221L 0.33 TCGA-DK-A6B6-01 4 83278012 83278012 G C HNRNPD Missense_Mutation p.Q264E 0.38 tolerated(0.06) possibly_damaging(0.751) TCGA-DK-A6B6-01 4 83784429 83784429 G A SEC31A Intron 0.50 TCGA-DK-A6B6-01 4 8383294 8383294 G A ACOX3 Silent p.L526L 0.15 TCGA-DK-A6B6-01 4 85636514 85636514 G C WDFY3 Missense_Mutation p.S2633C 0.32 tolerated(0.07) probably_damaging(0.989) TCGA-DK-A6B6-01 4 88035633 88035633 G C AFF1 Missense_Mutation p.E550Q 0.34 tolerated(0.26) unknown(0) TCGA-DK-A6B6-01 4 88344102 88344102 C T NUDT9 Silent p.L15L 0.41 TCGA-DK-A6B6-01 4 89978148 89978148 G C FAM13A 5'UTR 0.15 TCGA-DK-A6B6-01 5 107197308 107197308 G A FBXL17 3'UTR 0.38 TCGA-DK-A6B6-01 5 111519795 111519795 G A EPB41L4A Nonsense_Mutation p.Q514* 0.28 TCGA-DK-A6B6-01 5 118483001 118483001 C G DMXL1 Missense_Mutation p.S916C 0.20 deleterious(0.05) benign(0.376) TCGA-DK-A6B6-01 5 118484889 118484889 G C DMXL1 Missense_Mutation p.D1123H 0.32 tolerated(0.05) benign(0.299) TCGA-DK-A6B6-01 5 118728704 118728704 C T TNFAIP8 Silent p.L75L 0.40 TCGA-DK-A6B6-01 5 122729133 122729133 G A CEP120 Missense_Mutation p.S224F 0.36 deleterious(0) probably_damaging(0.953) TCGA-DK-A6B6-01 5 123983168 123983168 G A ZNF608 Missense_Mutation p.S970F 0.25 deleterious(0.04) possibly_damaging(0.605) TCGA-DK-A6B6-01 5 126860289 126860289 C T PRRC1 Missense_Mutation p.S57F 0.41 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-DK-A6B6-01 5 127420159 127420159 C T SLC12A2 Silent p.F171F 0.32 TCGA-DK-A6B6-01 5 131973864 131973864 G A RAD50 Silent p.L1189L 0.37 TCGA-DK-A6B6-01 5 132159853 132159853 G A SHROOM1 Silent p.L500L 0.35 TCGA-DK-A6B6-01 5 137485477 137485477 G A BRD8 Nonsense_Mutation p.Q1044* 0.05 TCGA-DK-A6B6-01 5 137501674 137501674 G A BRD8 Missense_Mutation p.S374L 0.29 tolerated(0.1) benign(0.441) TCGA-DK-A6B6-01 5 137622921 137622921 C T CDC25C Silent p.L321L 0.31 TCGA-DK-A6B6-01 5 137911068 137911068 G A HSPA9 5'UTR 0.18 TCGA-DK-A6B6-01 5 139508082 139508082 G C IGIP Missense_Mutation p.M7I 0.27 deleterious_low_confidence(0) benign(0.001) TCGA-DK-A6B6-01 5 140023682 140023682 C T TMCO6 Intron 0.37 TCGA-DK-A6B6-01 5 140076763 140076763 C T HARS2 Silent p.L323L 0.41 TCGA-DK-A6B6-01 5 140347112 140347112 C G PCDHAC2 Missense_Mutation p.S254C 0.26 deleterious(0.01) possibly_damaging(0.76) TCGA-DK-A6B6-01 5 140788655 140788655 G A PCDHGB6 Missense_Mutation p.E296K 0.30 tolerated(0.32) benign(0.006) TCGA-DK-A6B6-01 5 141358012 141358012 C T RNF14 Nonsense_Mutation p.Q151* 0.39 TCGA-DK-A6B6-01 5 142780067 142780067 G A NR3C1 Missense_Mutation p.S113F 0.39 tolerated_low_confidence(0.06) benign(0.008) TCGA-DK-A6B6-01 5 148563061 148563061 C T ABLIM3 Silent p.V20V 0.36 TCGA-DK-A6B6-01 5 150282726 150282726 C G ZNF300 Missense_Mutation p.E14Q 0.30 tolerated(0.43) benign(0.042) TCGA-DK-A6B6-01 5 153429502 153429502 C T MFAP3 Missense_Mutation p.L74F 0.35 deleterious(0.04) probably_damaging(0.977) TCGA-DK-A6B6-01 5 153789309 153789309 C A GALNT10 Missense_Mutation p.A458E 0.06 tolerated(0.27) probably_damaging(0.919) TCGA-DK-A6B6-01 5 153857471 153857471 G A HAND1 Missense_Mutation p.S33L 0.24 deleterious(0.02) benign(0.043) TCGA-DK-A6B6-01 5 154183259 154183259 C T LARP1 Missense_Mutation p.S721L 0.29 deleterious(0.03) benign(0.371) TCGA-DK-A6B6-01 5 161580479 161580479 G C GABRG2 3'UTR 0.34 TCGA-DK-A6B6-01 5 168006268 168006268 C T PANK3 Silent p.K7K 0.33 TCGA-DK-A6B6-01 5 169021605 169021605 C T SPDL1 Nonsense_Mutation p.Q271* 0.37 TCGA-DK-A6B6-01 5 171661337 171661337 C G UBTD2 Missense_Mutation p.L32F 0.35 deleterious(0.02) benign(0.007) TCGA-DK-A6B6-01 5 176731776 176731776 G A PRELID1 Silent p.L81L 0.43 TCGA-DK-A6B6-01 5 176860605 176860605 C T GRK6 Silent p.I222I 0.41 TCGA-DK-A6B6-01 5 179321393 179321393 C A TBC1D9B Silent p.G190G 0.40 TCGA-DK-A6B6-01 5 2752818 2752818 G C C5orf38 Missense_Mutation p.E95Q 0.38 tolerated_low_confidence(0.12) benign(0.002) TCGA-DK-A6B6-01 5 31323278 31323278 G A CDH6 Missense_Mutation p.V746M 0.38 deleterious(0.03) possibly_damaging(0.905) TCGA-DK-A6B6-01 5 32126180 32126180 G A GOLPH3 3'UTR 0.22 TCGA-DK-A6B6-01 5 34033411 34033411 G A C1QTNF3 Nonsense_Mutation p.Q190* 0.52 TCGA-DK-A6B6-01 5 37169002 37169002 G T C5orf42 Missense_Mutation p.T2375N 0.10 tolerated(0.08) benign(0.22) TCGA-DK-A6B6-01 5 49706754 49706754 G A EMB Silent p.F143F 0.27 TCGA-DK-A6B6-01 5 53606340 53606340 G A ARL15 5'UTR 0.57 TCGA-DK-A6B6-01 5 54528315 54528315 G A CCNO Silent p.F147F 0.41 TCGA-DK-A6B6-01 5 55396045 55396045 C T ANKRD55 Missense_Mutation p.E604K 0.30 tolerated_low_confidence(0.22) benign(0.001) TCGA-DK-A6B6-01 5 56219220 56219220 G A MIER3 Missense_Mutation p.S462L 0.33 tolerated(0.13) probably_damaging(0.909) TCGA-DK-A6B6-01 5 56231255 56231255 C G MIER3 Missense_Mutation p.V199L 0.37 tolerated(0.2) benign(0.016) TCGA-DK-A6B6-01 5 61811326 61811326 C T IPO11 Nonsense_Mutation p.Q672* 0.35 TCGA-DK-A6B6-01 5 6378486 6378486 G T MED10 Silent p.L37L 0.38 TCGA-DK-A6B6-01 5 64892900 64892900 G A TRIM23 Silent p.F429F 0.23 TCGA-DK-A6B6-01 5 65288637 65288637 C T ERBB2IP Missense_Mutation p.H31Y 0.27 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B6-01 5 72798795 72798795 C T BTF3 Nonsense_Mutation p.Q124* 0.42 TCGA-DK-A6B6-01 5 74018260 74018260 G A GFM2 Nonsense_Mutation p.Q719* 0.37 TCGA-DK-A6B6-01 5 74645875 74645875 C T HMGCR Nonsense_Mutation p.Q189* 0.32 TCGA-DK-A6B6-01 5 74721212 74721212 G C COL4A3BP Missense_Mutation p.S318C 0.05 deleterious(0.02) benign(0.067) TCGA-DK-A6B6-01 5 74973633 74973633 G A POC5 Missense_Mutation p.S517L 0.37 deleterious(0) probably_damaging(0.974) TCGA-DK-A6B6-01 5 80376426 80376426 G C RASGRF2 Missense_Mutation p.D327H 0.34 deleterious(0) probably_damaging(0.982) TCGA-DK-A6B6-01 5 80932422 80932422 T A SSBP2 Missense_Mutation p.N51Y 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-DK-A6B6-01 5 85578701 85578701 G C NBPF22P RNA 0.24 TCGA-DK-A6B6-01 5 90049514 90049514 G A GPR98 Missense_Mutation p.D3749N 0.32 benign(0.043) TCGA-DK-A6B6-01 5 90674580 90674580 G A ARRDC3 Missense_Mutation p.S98F 0.40 deleterious(0.02) possibly_damaging(0.454) TCGA-DK-A6B6-01 5 94834293 94834293 G C TTC37 Missense_Mutation p.S1115C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 5 96084256 96084256 C T CAST Missense_Mutation p.S415L 0.45 deleterious(0.02) possibly_damaging(0.69) TCGA-DK-A6B6-01 6 10887288 10887288 G A SYCP2L 5'UTR 0.42 TCGA-DK-A6B6-01 6 109713949 109713949 C G PPIL6 3'UTR 0.50 TCGA-DK-A6B6-01 6 116600489 116600489 C T TSPYL1 Missense_Mutation p.E169K 0.39 tolerated(0.32) benign(0.002) TCGA-DK-A6B6-01 6 116601038 116601038 C T TSPYL1 5'UTR 0.47 TCGA-DK-A6B6-01 6 11714685 11714685 C T ADTRP 3'UTR 0.21 TCGA-DK-A6B6-01 6 1313374 1313374 C T FOXQ1 Silent p.I145I 0.49 TCGA-DK-A6B6-01 6 13307930 13307930 C T TBC1D7 Silent p.L189L 0.22 TCGA-DK-A6B6-01 6 13307937 13307937 C T TBC1D7 Missense_Mutation p.R187K 0.23 tolerated(0.49) benign(0.028) TCGA-DK-A6B6-01 6 134495867 134495867 C T SGK1 Intron 0.27 TCGA-DK-A6B6-01 6 139694644 139694644 C T CITED2 Missense_Mutation p.M146I 0.41 tolerated(0.16) benign(0.002) TCGA-DK-A6B6-01 6 139695039 139695039 C T CITED2 Missense_Mutation p.D15N 0.29 tolerated(0.18) benign(0.022) TCGA-DK-A6B6-01 6 143091105 143091105 C T HIVEP2 Missense_Mutation p.D1591N 0.31 deleterious(0.03) benign(0.253) TCGA-DK-A6B6-01 6 143094612 143094612 C T HIVEP2 Missense_Mutation p.E422K 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-DK-A6B6-01 6 143486312 143486312 C T AIG1 Missense_Mutation p.H131Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 6 143772190 143772190 C T PEX3 Missense_Mutation p.S4F 0.16 deleterious(0.05) probably_damaging(0.911) TCGA-DK-A6B6-01 6 145142076 145142076 C T UTRN Missense_Mutation p.S3139L 0.52 deleterious(0) probably_damaging(0.998) TCGA-DK-A6B6-01 6 151779664 151779664 G C C6orf211 Missense_Mutation p.E117Q 0.50 deleterious(0) probably_damaging(0.996) TCGA-DK-A6B6-01 6 160176585 160176585 C T WTAP Missense_Mutation p.S378F 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DK-A6B6-01 6 160952912 160952912 C G LPA Missense_Mutation p.G1991A 0.51 deleterious(0.02) benign(0.002) TCGA-DK-A6B6-01 6 16328554 16328554 C G ATXN1 5'UTR 0.28 TCGA-DK-A6B6-01 6 166952227 166952227 C G RPS6KA2 Missense_Mutation p.E57Q 0.50 deleterious(0.03) possibly_damaging(0.69) TCGA-DK-A6B6-01 6 167728848 167728848 G C UNC93A Missense_Mutation p.V428L 0.40 deleterious(0.02) benign(0.048) TCGA-DK-A6B6-01 6 170110477 170110477 G A PHF10 Missense_Mutation p.S323F 0.52 deleterious(0.01) probably_damaging(0.962) TCGA-DK-A6B6-01 6 17628990 17628990 G A NUP153 Missense_Mutation p.S1147L 0.26 deleterious(0.02) benign(0.103) TCGA-DK-A6B6-01 6 18121781 18121781 G A NHLRC1 Missense_Mutation p.P353S 0.33 deleterious(0.03) probably_damaging(0.989) TCGA-DK-A6B6-01 6 24651197 24651197 G A TDP2 Missense_Mutation p.S303F 0.21 deleterious(0) possibly_damaging(0.796) TCGA-DK-A6B6-01 6 24714636 24714636 G A C6orf62 Silent p.F113F 0.46 TCGA-DK-A6B6-01 6 26123904 26123904 C T HIST1H2BC Missense_Mutation p.E77K 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-DK-A6B6-01 6 26124908 26124908 G A HIST1H2AC Intron 0.23 TCGA-DK-A6B6-01 6 26158517 26158517 G A HIST1H2BD Silent p.V40V 0.04 TCGA-DK-A6B6-01 6 28872291 28872291 G A TRIM27 Silent p.F366F 0.12 TCGA-DK-A6B6-01 6 29342573 29342573 C G OR12D3 Silent p.L164L 0.30 TCGA-DK-A6B6-01 6 30114921 30114921 C A TRIM40 Missense_Mutation p.Q172K 0.34 tolerated(0.23) benign(0.086) TCGA-DK-A6B6-01 6 31127452 31127452 G A TCF19 Nonsense_Mutation p.W69* 0.36 TCGA-DK-A6B6-01 6 31127453 31127453 G A TCF19 Nonsense_Mutation p.W69* 0.36 TCGA-DK-A6B6-01 6 31599767 31599767 C T PRRC2A Missense_Mutation p.S1106L 0.39 unknown(0) TCGA-DK-A6B6-01 6 31612317 31612317 G A BAG6 Missense_Mutation p.H484Y 0.14 tolerated(0.7) probably_damaging(0.914) TCGA-DK-A6B6-01 6 31704120 31704120 G A CLIC1 5'UTR 0.33 TCGA-DK-A6B6-01 6 31856826 31856826 G A EHMT2 Missense_Mutation p.S379L 0.50 deleterious(0.04) benign(0.026) TCGA-DK-A6B6-01 6 31911913 31911913 G C CFB Missense_Mutation p.E451D 0.33 tolerated(0.1) benign(0.374) TCGA-DK-A6B6-01 6 31919196 31919196 C G CFB Missense_Mutation p.R1181G 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 6 32013827 32013827 C T TNXB 5'UTR 0.33 TCGA-DK-A6B6-01 6 3287119 3287119 G A SLC22A23 Missense_Mutation p.S507L 0.36 deleterious(0) probably_damaging(0.949) TCGA-DK-A6B6-01 6 32917584 32917584 G A HLA-DMA Silent p.L152L 0.23 TCGA-DK-A6B6-01 6 33169003 33169003 C T SLC39A7 5'UTR 0.50 TCGA-DK-A6B6-01 6 33239358 33239358 C T VPS52 Intron 0.42 TCGA-DK-A6B6-01 6 35047442 35047442 C T ANKS1A Silent p.V811V 0.22 TCGA-DK-A6B6-01 6 36106813 36106813 C T MAPK13 Silent p.L333L 0.18 TCGA-DK-A6B6-01 6 36261955 36261955 C G PNPLA1 Intron 0.33 TCGA-DK-A6B6-01 6 36291965 36291965 C T C6orf222 Missense_Mutation p.E391K 0.41 deleterious(0.04) possibly_damaging(0.801) TCGA-DK-A6B6-01 6 37450880 37450880 C G CCDC167 3'UTR 0.29 TCGA-DK-A6B6-01 6 38746205 38746205 C G DNAH8 Missense_Mutation p.I451M 0.29 possibly_damaging(0.796) TCGA-DK-A6B6-01 6 38746215 38746215 C G DNAH8 Missense_Mutation p.Q455E 0.29 benign(0.006) TCGA-DK-A6B6-01 6 38939412 38939412 C G DNAH8 Missense_Mutation p.R3949G 0.26 probably_damaging(0.995) TCGA-DK-A6B6-01 6 44216418 44216418 C T HSP90AB1 Nonsense_Mutation p.Q18* 0.25 TCGA-DK-A6B6-01 6 44219858 44219858 G A HSP90AB1 Missense_Mutation p.D529N 0.39 deleterious(0.04) possibly_damaging(0.632) TCGA-DK-A6B6-01 6 46661436 46661436 G A TDRD6 Silent p.Q1857Q 0.24 TCGA-DK-A6B6-01 6 52137213 52137213 G A MCM3 Silent p.Y616Y 0.25 TCGA-DK-A6B6-01 6 52268222 52268222 C T PAQR8 Nonsense_Mutation p.Q71* 0.30 TCGA-DK-A6B6-01 6 52317570 52317570 C T EFHC1 Missense_Mutation p.L220F 0.28 tolerated(0.33) benign(0.187) TCGA-DK-A6B6-01 6 52622768 52622768 C T GSTA2 5'UTR 0.16 TCGA-DK-A6B6-01 6 52876709 52876709 C T ICK Silent p.E450E 0.09 TCGA-DK-A6B6-01 6 52876970 52876970 C T ICK Missense_Mutation p.R403K 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-DK-A6B6-01 6 54806295 54806295 C T FAM83B Silent p.I842I 0.23 TCGA-DK-A6B6-01 6 55739619 55739619 G C BMP5 Silent p.L15L 0.21 TCGA-DK-A6B6-01 6 55739685 55739685 G A BMP5 5'UTR 0.16 TCGA-DK-A6B6-01 6 56418128 56418128 C T DST Silent p.V2531V 0.32 TCGA-DK-A6B6-01 6 592473 592473 C T EXOC2 Silent p.L396L 0.20 TCGA-DK-A6B6-01 6 62604697 62604697 C T KHDRBS2 Missense_Mutation p.R218Q 0.31 deleterious(0.03) possibly_damaging(0.616) TCGA-DK-A6B6-01 6 7229527 7229527 C T RREB1 Nonsense_Mutation p.Q399* 0.27 TCGA-DK-A6B6-01 6 7230393 7230393 C T RREB1 Silent p.I687I 0.35 TCGA-DK-A6B6-01 6 74407261 74407261 C G CD109 Silent p.V71V 0.20 TCGA-DK-A6B6-01 6 76372980 76372980 C T SENP6 Missense_Mutation p.S247F 0.37 deleterious(0.01) possibly_damaging(0.534) TCGA-DK-A6B6-01 6 86303407 86303407 C A SNX14 Missense_Mutation p.Q10H 0.36 deleterious_low_confidence(0.02) benign(0.1) TCGA-DK-A6B6-01 6 90383903 90383903 C G MDN1 Missense_Mutation p.E4389D 0.44 benign(0.4) TCGA-DK-A6B6-01 7 100304474 100304474 C T POP7 Silent p.P7P 0.12 TCGA-DK-A6B6-01 7 103162566 103162566 C T RELN Missense_Mutation p.R2524Q 0.13 tolerated(0.08) probably_damaging(0.951) TCGA-DK-A6B6-01 7 105142964 105142964 G A PUS7 Silent p.I211I 0.48 TCGA-DK-A6B6-01 7 108524162 108524162 C T C7orf66 Missense_Mutation p.E84K 0.17 tolerated_low_confidence(0.07) benign(0.182) TCGA-DK-A6B6-01 7 11091393 11091393 C T PHF14 Missense_Mutation p.P823S 0.48 tolerated(0.25) benign(0.025) TCGA-DK-A6B6-01 7 113518581 113518581 G C PPP1R3A Missense_Mutation p.Q856E 0.18 tolerated(0.44) benign(0.008) TCGA-DK-A6B6-01 7 127014673 127014673 G A ZNF800 Silent p.F239F 0.15 TCGA-DK-A6B6-01 7 127229639 127229639 G A ARF5 Silent p.Q83Q 0.51 TCGA-DK-A6B6-01 7 128119542 128119542 C T METTL2B Missense_Mutation p.S178F 0.15 deleterious(0.03) benign(0.078) TCGA-DK-A6B6-01 7 128802296 128802296 C T TSPAN33 Silent p.L74L 0.55 TCGA-DK-A6B6-01 7 132937899 132937899 C T EXOC4 Silent p.V14V 0.41 TCGA-DK-A6B6-01 7 132937934 132937934 C G EXOC4 Missense_Mutation p.S26C 0.35 deleterious(0.01) possibly_damaging(0.904) TCGA-DK-A6B6-01 7 135333283 135333283 C T NUP205 Silent p.L2006L 0.49 TCGA-DK-A6B6-01 7 137341245 137341245 G A DGKI Silent p.V216V 0.18 TCGA-DK-A6B6-01 7 138333772 138333772 G A SVOPL Silent p.L215L 0.52 TCGA-DK-A6B6-01 7 150768673 150768673 C T SLC4A2 Silent p.I724I 0.59 TCGA-DK-A6B6-01 7 150768813 150768813 G A SLC4A2 Silent p.L743L 0.54 TCGA-DK-A6B6-01 7 17338877 17338877 C T AHR 5'UTR 0.26 TCGA-DK-A6B6-01 7 21826373 21826373 C G DNAH11 Silent p.V3250V 0.55 TCGA-DK-A6B6-01 7 2274728 2274728 G A FTSJ2 3'UTR 0.45 TCGA-DK-A6B6-01 7 23240296 23240296 C T NUPL2 Nonsense_Mutation p.Q402* 0.16 TCGA-DK-A6B6-01 7 23293001 23293001 C T GPNMB Missense_Mutation p.S49F 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-DK-A6B6-01 7 24903175 24903175 G C OSBPL3 Silent p.L239L 0.48 TCGA-DK-A6B6-01 7 26224570 26224570 G T NFE2L3 Missense_Mutation p.D418Y 0.50 deleterious(0.01) probably_damaging(0.974) TCGA-DK-A6B6-01 7 27141045 27141045 C T HOXA2 Missense_Mutation p.R144Q 0.60 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 7 29605940 29605940 C T PRR15 5'UTR 0.59 TCGA-DK-A6B6-01 7 30536735 30536735 G A GGCT Silent p.I180I 0.15 TCGA-DK-A6B6-01 7 37780286 37780286 C G GPR141 Missense_Mutation p.I97M 0.14 deleterious(0.01) possibly_damaging(0.844) TCGA-DK-A6B6-01 7 38305039 38305039 G A TRGC1 Missense_Mutation p.S81L 0.33 deleterious(0) probably_damaging(0.962) TCGA-DK-A6B6-01 7 45140930 45140930 C T TBRG4 Missense_Mutation p.R574Q 0.45 deleterious(0.01) probably_damaging(0.971) TCGA-DK-A6B6-01 7 47344438 47344438 C T TNS3 Silent p.R938R 0.47 TCGA-DK-A6B6-01 7 51085245 51085245 C T COBL 3'UTR 0.44 TCGA-DK-A6B6-01 7 55238403 55238403 C T EGFR Intron 0.50 TCGA-DK-A6B6-01 7 6048631 6048631 G A PMS2 Missense_Mutation p.S7L 0.49 tolerated_low_confidence(0.4) benign(0.002) TCGA-DK-A6B6-01 7 64292754 64292754 C T ZNF138 3'Flank 0.24 TCGA-DK-A6B6-01 7 64439662 64439662 G A ZNF117 Missense_Mutation p.S96L 0.43 tolerated(0.24) benign(0.005) TCGA-DK-A6B6-01 7 64646765 64646765 C G INTS4L1 Intron 0.45 TCGA-DK-A6B6-01 7 6639727 6639727 C T C7orf26 Missense_Mutation p.S283F 0.48 tolerated(0.24) possibly_damaging(0.683) TCGA-DK-A6B6-01 7 6639964 6639964 C G C7orf26 Nonsense_Mutation p.S362* 0.52 TCGA-DK-A6B6-01 7 75156979 75156979 G A PMS2P3 RNA 0.14 TCGA-DK-A6B6-01 7 75894123 75894123 G C SRRM3 Missense_Mutation p.E239Q 0.57 tolerated(0.18) unknown(0) TCGA-DK-A6B6-01 7 76126698 76126698 C T DTX2 Missense_Mutation p.L352F 0.08 tolerated(0.21) possibly_damaging(0.748) TCGA-DK-A6B6-01 7 76143381 76143381 C T UPK3B Silent p.L248L 0.19 TCGA-DK-A6B6-01 7 77569639 77569639 C T PHTF2 Intron 0.15 TCGA-DK-A6B6-01 7 8153608 8153608 G A ICA1 Missense_Mutation p.S466L 0.51 deleterious(0) probably_damaging(0.983) TCGA-DK-A6B6-01 7 86823347 86823347 G C DMTF1 Missense_Mutation p.E653Q 0.52 tolerated_low_confidence(0.12) benign(0.112) TCGA-DK-A6B6-01 7 87530136 87530136 G C DBF4 Missense_Mutation p.E289D 0.18 tolerated(0.58) benign(0.346) TCGA-DK-A6B6-01 7 87536595 87536595 C G DBF4 Missense_Mutation p.S381C 0.20 deleterious(0.03) benign(0.015) TCGA-DK-A6B6-01 7 92158209 92158209 C T RBM48 Nonsense_Mutation p.R28* 0.16 TCGA-DK-A6B6-01 7 98951540 98951540 C T ARPC1A Missense_Mutation p.S170F 0.64 deleterious(0.02) probably_damaging(0.929) TCGA-DK-A6B6-01 7 99051739 99051739 G A CPSF4 Missense_Mutation p.E241K 0.12 tolerated(0.06) benign(0.013) TCGA-DK-A6B6-01 7 99097547 99097547 G A ZNF394 Missense_Mutation p.S57L 0.51 tolerated(0.65) benign(0) TCGA-DK-A6B6-01 7 99123932 99123932 C T ZKSCAN5 Silent p.V423V 0.20 TCGA-DK-A6B6-01 7 99490261 99490261 G A TRIM4 Missense_Mutation p.S343L 0.48 deleterious(0.01) benign(0.014) TCGA-DK-A6B6-01 7 99631037 99631037 G A ZKSCAN1 Silent p.E303E 0.15 TCGA-DK-A6B6-01 7 99631213 99631213 C T ZKSCAN1 Missense_Mutation p.S362F 0.48 deleterious(0) possibly_damaging(0.613) TCGA-DK-A6B6-01 8 100286458 100286458 G A VPS13B Missense_Mutation p.E850K 0.33 deleterious(0) possibly_damaging(0.636) TCGA-DK-A6B6-01 8 105463492 105463492 C T DPYS Silent p.V135V 0.23 TCGA-DK-A6B6-01 8 117868972 117868972 C G RAD21 Missense_Mutation p.D243H 0.31 deleterious(0.04) probably_damaging(0.979) TCGA-DK-A6B6-01 8 123964020 123964020 G A ZHX2 Silent p.L90L 0.39 TCGA-DK-A6B6-01 8 126091032 126091032 G A KIAA0196 Missense_Mutation p.S220F 0.29 tolerated(0.05) benign(0.073) TCGA-DK-A6B6-01 8 127569296 127569296 G A FAM84B Silent p.L113L 0.29 TCGA-DK-A6B6-01 8 139151323 139151323 C T FAM135B Silent p.Q1269Q 0.30 TCGA-DK-A6B6-01 8 13959967 13959967 C T SGCZ Missense_Mutation p.R221H 0.29 deleterious(0) possibly_damaging(0.808) TCGA-DK-A6B6-01 8 139603669 139603669 G A COL22A1 Missense_Mutation p.P1564L 0.26 unknown(0) TCGA-DK-A6B6-01 8 14022128 14022128 C G SGCZ Missense_Mutation p.D170H 0.38 tolerated(0.07) possibly_damaging(0.695) TCGA-DK-A6B6-01 8 144295145 144295145 G A GPIHBP1 Translation_Start_Site p.M1? 0.43 deleterious(0) benign(0.019) TCGA-DK-A6B6-01 8 144808914 144808914 G A FAM83H Missense_Mutation p.S906L 0.33 deleterious(0.02) benign(0.05) TCGA-DK-A6B6-01 8 144897496 144897496 G A SCRIB Missense_Mutation p.S16L 0.29 probably_damaging(0.996) TCGA-DK-A6B6-01 8 144942583 144942583 G A EPPK1 Silent p.F1613F 0.37 TCGA-DK-A6B6-01 8 145579212 145579212 G A FBXL6 Silent p.L533L 0.38 TCGA-DK-A6B6-01 8 145621950 145621950 G A CPSF1 Missense_Mutation p.H897Y 0.32 deleterious(0.02) benign(0.41) TCGA-DK-A6B6-01 8 146156075 146156075 G A ZNF16 3'UTR 0.30 TCGA-DK-A6B6-01 8 146156409 146156409 G A ZNF16 Silent p.L588L 0.31 TCGA-DK-A6B6-01 8 17827154 17827154 G A PCM1 Missense_Mutation p.E1161K 0.30 tolerated(0.14) benign(0.117) TCGA-DK-A6B6-01 8 21767043 21767043 G A DOK2 Nonsense_Mutation p.R340* 0.37 TCGA-DK-A6B6-01 8 21859708 21859708 G C XPO7 Missense_Mutation p.K956N 0.22 tolerated(0.17) possibly_damaging(0.552) TCGA-DK-A6B6-01 8 22052311 22052311 C T BMP1 Silent p.I506I 0.29 TCGA-DK-A6B6-01 8 23021529 23021529 C T TNFRSF10D 5'UTR 0.36 TCGA-DK-A6B6-01 8 24170898 24170898 C T ADAM28 Intron 0.29 TCGA-DK-A6B6-01 8 24776069 24776069 G C NEFM Missense_Mutation p.E901Q 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-DK-A6B6-01 8 26228033 26228033 C T PPP2R2A 3'UTR 0.39 TCGA-DK-A6B6-01 8 28321126 28321126 T C FBXO16 Intron 0.41 TCGA-DK-A6B6-01 8 30614338 30614338 G C UBXN8 RNA 0.38 TCGA-DK-A6B6-01 8 30704952 30704952 C T TEX15 Missense_Mutation p.E528K 0.34 deleterious(0.01) probably_damaging(0.961) TCGA-DK-A6B6-01 8 37556167 37556167 C T ZNF703 Missense_Mutation p.S583L 0.26 deleterious(0) possibly_damaging(0.599) TCGA-DK-A6B6-01 8 41566465 41566465 G A ANK1 Missense_Mutation p.A643V 0.30 tolerated(0.08) benign(0.065) TCGA-DK-A6B6-01 8 41798738 41798738 G A KAT6A Silent p.L887L 0.40 TCGA-DK-A6B6-01 8 42175234 42175234 C T IKBKB Silent p.I395I 0.27 TCGA-DK-A6B6-01 8 42940488 42940488 C T FNTA 3'UTR 0.44 TCGA-DK-A6B6-01 8 48641625 48641625 G C SPIDR Intron 0.30 TCGA-DK-A6B6-01 8 48973239 48973239 C T UBE2V2 Intron 0.30 TCGA-DK-A6B6-01 8 54960475 54960475 G A LYPLA1 3'UTR 0.44 TCGA-DK-A6B6-01 8 63951279 63951279 C G GGH Missense_Mutation p.G17R 0.28 tolerated(0.28) benign(0.132) TCGA-DK-A6B6-01 8 66621412 66621412 G C MTFR1 3'UTR 0.45 TCGA-DK-A6B6-01 8 75761492 75761492 T C PI15 3'UTR 0.39 TCGA-DK-A6B6-01 8 80942390 80942390 C T MRPS28 Missense_Mutation p.E32K 0.29 tolerated(0.14) benign(0.169) TCGA-DK-A6B6-01 8 87162411 87162411 G A ATP6V0D2 Missense_Mutation p.R237Q 0.25 deleterious(0) probably_damaging(0.949) TCGA-DK-A6B6-01 8 87437544 87437544 C T WWP1 Missense_Mutation p.P385L 0.29 deleterious(0) benign(0.248) TCGA-DK-A6B6-01 9 100234723 100234723 C T TDRD7 Silent p.I630I 0.36 TCGA-DK-A6B6-01 9 100890904 100890904 C T CORO2A Missense_Mutation p.M355I 0.44 deleterious(0.02) probably_damaging(0.987) TCGA-DK-A6B6-01 9 101540693 101540693 C G ANKS6 Missense_Mutation p.R461P 0.39 deleterious(0) probably_damaging(0.995) TCGA-DK-A6B6-01 9 101980999 101980999 C T ALG2 Silent p.R156R 0.14 TCGA-DK-A6B6-01 9 103070858 103070858 G A TEX10 Silent p.L797L 0.28 TCGA-DK-A6B6-01 9 107298847 107298847 G A OR13C3 Missense_Mutation p.S83F 0.34 tolerated(0.12) benign(0.01) TCGA-DK-A6B6-01 9 107360888 107360888 A C OR13C5 Missense_Mutation p.N269K 0.32 tolerated(0.06) benign(0.016) TCGA-DK-A6B6-01 9 107457693 107457693 G C OR13D1 Missense_Mutation p.E331Q 0.33 tolerated(0.14) benign(0.058) TCGA-DK-A6B6-01 9 110091908 110091908 C T RAD23B Missense_Mutation p.L401F 0.36 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 9 112219576 112219576 G A PTPN3 Missense_Mutation p.S81F 0.37 tolerated(0.06) probably_damaging(0.926) TCGA-DK-A6B6-01 9 117139801 117139801 C G AKNA Missense_Mutation p.E96Q 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-DK-A6B6-01 9 125487147 125487147 G C OR1L4 Silent p.L293L 0.26 TCGA-DK-A6B6-01 9 127996404 127996404 C T RABEPK 3'Flank 0.47 TCGA-DK-A6B6-01 9 128003540 128003540 G A HSPA5 5'UTR 0.40 TCGA-DK-A6B6-01 9 128109130 128109130 C T GAPVD1 Nonsense_Mutation p.Q1054* 0.46 TCGA-DK-A6B6-01 9 130149473 130149473 C T GARNL3 Missense_Mutation p.S797L 0.29 tolerated(0.37) probably_damaging(0.999) TCGA-DK-A6B6-01 9 130536459 130536459 C T SH2D3C Missense_Mutation p.G109R 0.32 tolerated_low_confidence(0.62) benign(0) TCGA-DK-A6B6-01 9 130549879 130549879 G A CDK9 Missense_Mutation p.R86Q 0.32 tolerated(0.11) benign(0.161) TCGA-DK-A6B6-01 9 131025344 131025344 C T GOLGA2 Missense_Mutation p.D294N 0.36 deleterious(0.02) probably_damaging(1) TCGA-DK-A6B6-01 9 131565699 131565699 C T TBC1D13 Silent p.L238L 0.27 TCGA-DK-A6B6-01 9 131566275 131566275 C T TBC1D13 Silent p.L265L 0.30 TCGA-DK-A6B6-01 9 131566386 131566386 C G TBC1D13 Silent p.L302L 0.34 TCGA-DK-A6B6-01 9 131770969 131770969 G A SH3GLB2 Silent p.L394L 0.36 TCGA-DK-A6B6-01 9 132687361 132687361 G C FNBP1 Missense_Mutation p.Q289E 0.36 deleterious(0) benign(0.017) TCGA-DK-A6B6-01 9 132854562 132854562 C G GPR107 Silent p.L255L 0.19 TCGA-DK-A6B6-01 9 132854600 132854600 C T GPR107 Missense_Mutation p.S268L 0.27 tolerated(0.55) benign(0.023) TCGA-DK-A6B6-01 9 132854624 132854624 C G GPR107 Missense_Mutation p.S276C 0.33 deleterious(0) benign(0.098) TCGA-DK-A6B6-01 9 134349001 134349001 C T PRRC2B Silent p.I738I 0.42 TCGA-DK-A6B6-01 9 135205093 135205093 G A SETX Missense_Mutation p.S631F 0.21 tolerated(0.71) benign(0.006) TCGA-DK-A6B6-01 9 140358794 140358794 C T PNPLA7 Missense_Mutation p.E1052K 0.31 deleterious(0) benign(0.401) TCGA-DK-A6B6-01 9 140446845 140446845 C T MRPL41 Silent p.F104F 0.25 TCGA-DK-A6B6-01 9 140657180 140657180 C T EHMT1 Missense_Mutation p.L519F 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-A6B6-01 9 14146736 14146736 G C NFIB Missense_Mutation p.P293A 0.30 tolerated(0.09) probably_damaging(0.995) TCGA-DK-A6B6-01 9 14859371 14859371 G A FREM1 Silent p.F147F 0.32 TCGA-DK-A6B6-01 9 15188060 15188060 C T TTC39B Nonsense_Mutation p.W435* 0.26 TCGA-DK-A6B6-01 9 19080529 19080529 C T HAUS6 Missense_Mutation p.E338K 0.33 deleterious(0) probably_damaging(0.988) TCGA-DK-A6B6-01 9 19380038 19380038 C T RPS6 Intron 0.39 TCGA-DK-A6B6-01 9 19380197 19380197 G A RPS6 5'UTR 0.31 TCGA-DK-A6B6-01 9 21384831 21384831 G A IFNA2 Silent p.V166V 0.29 TCGA-DK-A6B6-01 9 21971199 21971199 C A CDKN2A Missense_Mutation p.M53I 0.35 deleterious(0) probably_damaging(0.943) TCGA-DK-A6B6-01 9 21974697 21974704 AACTATTC - CDKN2A Frame_Shift_Del p.N42Rfs*75 0.40 TCGA-DK-A6B6-01 9 32572968 32572968 G A NDUFB6 Missense_Mutation p.R31W 0.34 deleterious(0.01) benign(0.26) TCGA-DK-A6B6-01 9 33255242 33255242 G A BAG1 Missense_Mutation p.S338F 0.34 deleterious(0) probably_damaging(0.986) TCGA-DK-A6B6-01 9 34088385 34088385 G A DCAF12 Missense_Mutation p.S442L 0.33 deleterious(0.05) benign(0.255) TCGA-DK-A6B6-01 9 34249794 34249794 C T UBAP1 Silent p.F431F 0.32 TCGA-DK-A6B6-01 9 35095512 35095512 G A PIGO Silent p.F17F 0.43 TCGA-DK-A6B6-01 9 35399009 35399009 C G UNC13B Missense_Mutation p.L1269V 0.40 deleterious(0.05) benign(0.271) TCGA-DK-A6B6-01 9 37441286 37441286 A C ZBTB5 Missense_Mutation p.F421L 0.27 tolerated_low_confidence(0.65) benign(0) TCGA-DK-A6B6-01 9 377195 377195 C T DOCK8 Silent p.V808V 0.19 TCGA-DK-A6B6-01 9 3879436 3879436 C T GLIS3 Missense_Mutation p.G763E 0.43 tolerated(0.58) probably_damaging(0.926) TCGA-DK-A6B6-01 9 4718472 4718472 G A AK3 Silent p.I170I 0.38 TCGA-DK-A6B6-01 9 6331163 6331163 C T TPD52L3 3'Flank 0.50 TCGA-DK-A6B6-01 9 6460580 6460580 G C UHRF2 Missense_Mutation p.E218Q 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-DK-A6B6-01 9 70999456 70999456 C T PGM5 Silent p.F189F 0.33 TCGA-DK-A6B6-01 9 71836033 71836033 C T TJP2 Silent p.L222L 0.42 TCGA-DK-A6B6-01 9 74345053 74345053 G A TMEM2 Silent p.L630L 0.30 TCGA-DK-A6B6-01 9 85677430 85677430 G A RASEF Missense_Mutation p.S118L 0.43 tolerated(0.36) benign(0) TCGA-DK-A6B6-01 9 86570437 86570437 G A C9orf64 Silent p.L152L 0.32 TCGA-DK-A6B6-01 9 86586216 86586216 G A HNRNPK Missense_Mutation p.S355L 0.37 deleterious(0.05) benign(0.034) TCGA-DK-A6B6-01 9 95050488 95050488 C G IARS Missense_Mutation p.D66H 0.34 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 9 95480168 95480168 G A BICD2 Silent p.T723T 0.27 TCGA-DK-A6B6-01 9 95482795 95482795 G A BICD2 Silent p.L283L 0.35 TCGA-DK-A6B6-01 9 95527034 95527034 G A BICD2 5'UTR 0.33 TCGA-DK-A6B6-01 9 95797937 95797937 G C FGD3 3'UTR 0.15 TCGA-DK-A6B6-01 X 101912102 101912102 G A GPRASP1 Silent p.R1087R 0.67 TCGA-DK-A6B6-01 X 106046199 106046199 G T TBC1D8B Missense_Mutation p.G39V 0.69 tolerated(0.05) possibly_damaging(0.558) TCGA-DK-A6B6-01 X 109561181 109561181 C T AMMECR1 Missense_Mutation p.R40Q 0.69 tolerated_low_confidence(0.33) possibly_damaging(0.614) TCGA-DK-A6B6-01 X 109561233 109561233 C T AMMECR1 Missense_Mutation p.G23S 0.64 tolerated_low_confidence(0.57) probably_damaging(0.968) TCGA-DK-A6B6-01 X 119005903 119005903 C T NDUFA1 Missense_Mutation p.S10F 0.72 deleterious(0) benign(0.136) TCGA-DK-A6B6-01 X 119387422 119387422 C T ZBTB33 Missense_Mutation p.S51L 0.74 deleterious(0) probably_damaging(1) TCGA-DK-A6B6-01 X 128696762 128696762 G A OCRL Missense_Mutation p.E415K 0.66 deleterious(0.01) benign(0.099) TCGA-DK-A6B6-01 X 136113078 136113078 C T GPR101 Silent p.K252K 0.69 TCGA-DK-A6B6-01 X 142605220 142605220 G A SPANXN3 5'UTR 0.63 TCGA-DK-A6B6-01 X 14937913 14937913 C G MOSPD2 Missense_Mutation p.F513L 0.68 tolerated(0.44) benign(0.006) TCGA-DK-A6B6-01 X 149905822 149905822 C G MTMR1 Missense_Mutation p.L451V 0.68 deleterious(0.01) possibly_damaging(0.801) TCGA-DK-A6B6-01 X 151138851 151138851 G A GABRE Missense_Mutation p.S27L 0.64 tolerated_low_confidence(0.68) benign(0) TCGA-DK-A6B6-01 X 21861409 21861409 G A MBTPS2 Missense_Mutation p.R66Q 0.67 tolerated(0.33) benign(0.184) TCGA-DK-A6B6-01 X 30260481 30260491 TGCACTGGATC - MAGEB4 Frame_Shift_Del p.C77* 0.50 TCGA-DK-A6B6-01 X 34961582 34961582 C T FAM47B Missense_Mutation p.R212C 0.65 tolerated(0.24) benign(0.016) TCGA-DK-A6B6-01 X 41025165 41025165 C G USP9X Missense_Mutation p.Q676E 0.60 deleterious(0.05) possibly_damaging(0.759) TCGA-DK-A6B6-01 X 68060482 68060482 C T EFNB1 Silent p.I342I 0.64 TCGA-DK-A6B6-01 X 70514072 70514072 C T NONO Intron 0.68 TCGA-DK-A6B6-01 X 77224356 77224356 C A PGAM4 3'UTR 0.77 TCGA-DK-A6B6-01 X 77224590 77224590 C G PGAM4 Silent p.L182L 0.64 TCGA-DK-A6B6-01 X 92926917 92926917 C G NAP1L3 Missense_Mutation p.D463H 0.69 tolerated(0.08) probably_damaging(0.988) TCGA-DK-AA6L-01 10 121207671 121207671 C T GRK5 Nonsense_Mutation p.Q435* 0.22 TCGA-DK-AA6L-01 10 129350743 129350743 A G NPS Missense_Mutation p.Y37C 0.34 tolerated(0.12) benign(0.013) TCGA-DK-AA6L-01 10 26513552 26513552 G A GAD2 Silent p.G232G 0.24 TCGA-DK-AA6L-01 10 26802583 26802583 C A APBB1IP Missense_Mutation p.N269K 0.21 deleterious(0.02) possibly_damaging(0.667) TCGA-DK-AA6L-01 10 35333784 35333784 T A CUL2 Silent p.G192G 0.49 TCGA-DK-AA6L-01 10 55566580 55566580 G A PCDH15 Missense_Mutation p.T1602I 0.40 tolerated_low_confidence(0.07) benign(0.36) TCGA-DK-AA6L-01 10 64415153 64415153 G A ZNF365 Intron 0.31 TCGA-DK-AA6L-01 10 91163063 91163063 T C IFIT1 Missense_Mutation p.L344P 0.30 deleterious(0) possibly_damaging(0.514) TCGA-DK-AA6L-01 10 96014054 96014054 A G PLCE1 Silent p.Q1129Q 0.20 TCGA-DK-AA6L-01 11 1019341 1019341 G C MUC6 Missense_Mutation p.Q1322E 0.25 unknown(0) TCGA-DK-AA6L-01 11 111156491 111156491 C T C11orf53 Silent p.S141S 0.45 TCGA-DK-AA6L-01 11 117093921 117093921 C G PCSK7 Intron 0.21 TCGA-DK-AA6L-01 11 117093939 117093939 C G PCSK7 Missense_Mutation p.K380N 0.22 tolerated(0.29) benign(0.161) TCGA-DK-AA6L-01 11 117984051 117984051 C T TMPRSS4 Silent p.L271L 0.50 TCGA-DK-AA6L-01 11 118918694 118918694 G A HYOU1 Silent p.L825L 0.25 TCGA-DK-AA6L-01 11 11988625 11988625 C A DKK3 Missense_Mutation p.E183D 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 11 130066275 130066275 C G ST14 Missense_Mutation p.F385L 0.23 tolerated(0.07) possibly_damaging(0.791) TCGA-DK-AA6L-01 11 13729536 13729536 C G FAR1 Nonsense_Mutation p.S152* 0.32 TCGA-DK-AA6L-01 11 13743302 13743302 C T FAR1 Missense_Mutation p.H385Y 0.23 tolerated(0.77) benign(0.035) TCGA-DK-AA6L-01 11 18631342 18631342 C T SPTY2D1 3'UTR 0.31 TCGA-DK-AA6L-01 11 27389696 27389696 G T LGR4 Nonsense_Mutation p.C858* 0.18 TCGA-DK-AA6L-01 11 3022463 3022463 C T CARS Missense_Mutation p.D793N 0.35 deleterious(0.01) benign(0.347) TCGA-DK-AA6L-01 11 32955905 32955905 C G QSER1 Missense_Mutation p.S905C 0.28 deleterious(0) possibly_damaging(0.681) TCGA-DK-AA6L-01 11 34668117 34668117 G C EHF Missense_Mutation p.E99Q 0.31 tolerated(0.33) possibly_damaging(0.893) TCGA-DK-AA6L-01 11 43413105 43413105 A G TTC17 Missense_Mutation p.I170M 0.18 tolerated(0.39) possibly_damaging(0.573) TCGA-DK-AA6L-01 11 47843361 47843361 C A NUP160 Missense_Mutation p.D398Y 0.20 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6L-01 11 58352328 58352328 G A ZFP91 Splice_Site p.X114_splice 0.11 TCGA-DK-AA6L-01 11 58352336 58352336 G C ZFP91 Missense_Mutation p.E117Q 0.10 deleterious_low_confidence(0) benign(0.083) TCGA-DK-AA6L-01 11 62298834 62298834 C G AHNAK Missense_Mutation p.D1019H 0.20 probably_damaging(1) TCGA-DK-AA6L-01 11 62455934 62455936 AAG - LRRN4CL In_Frame_Del p.F15del 0.50 TCGA-DK-AA6L-01 11 64361160 64361160 C G SLC22A12 Missense_Mutation p.L239V 0.29 tolerated(0.21) benign(0.086) TCGA-DK-AA6L-01 11 66359424 66359424 C T CCDC87 Missense_Mutation p.E355K 0.25 tolerated(0.07) benign(0.031) TCGA-DK-AA6L-01 11 6704461 6704461 C G MRPL17 Missense_Mutation p.E23Q 0.36 tolerated(0.16) benign(0.149) TCGA-DK-AA6L-01 11 67259452 67259452 C T PITPNM1 3'UTR 0.30 TCGA-DK-AA6L-01 11 71734167 71734167 C G NUMA1 Missense_Mutation p.E79Q 0.23 benign(0.012) TCGA-DK-AA6L-01 11 75139664 75139664 C T KLHL35 Missense_Mutation p.D297N 0.26 tolerated(1) unknown(0) TCGA-DK-AA6L-01 11 77884827 77884827 C - KCTD21 Frame_Shift_Del p.Y259Tfs*40 0.14 TCGA-DK-AA6L-01 11 94230228 94230228 G A ANKRD49 Intron 0.14 TCGA-DK-AA6L-01 11 94704641 94704641 G C CWC15 Missense_Mutation p.Q48E 0.21 deleterious(0) benign(0.388) TCGA-DK-AA6L-01 12 102154988 102154988 C T GNPTAB Missense_Mutation p.D1018N 0.21 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6L-01 12 102155034 102155034 C G GNPTAB Missense_Mutation p.M1002I 0.17 tolerated(0.05) probably_damaging(0.975) TCGA-DK-AA6L-01 12 105589104 105589104 C G APPL2 Missense_Mutation p.Q398H 0.24 deleterious(0.01) possibly_damaging(0.777) TCGA-DK-AA6L-01 12 108910839 108910839 G A FICD Silent p.L30L 0.17 TCGA-DK-AA6L-01 12 121881584 121881584 G C KDM2B Missense_Mutation p.Q822E 0.16 tolerated(0.42) benign(0) TCGA-DK-AA6L-01 12 15822338 15822338 G A EPS8 Nonsense_Mutation p.Q167* 0.28 TCGA-DK-AA6L-01 12 1893113 1893113 C T ADIPOR2 Silent p.F302F 0.19 TCGA-DK-AA6L-01 12 1893167 1893167 C G ADIPOR2 Silent p.L320L 0.18 TCGA-DK-AA6L-01 12 432923 432925 CTT - KDM5A In_Frame_Del p.E664del 0.19 TCGA-DK-AA6L-01 12 52779186 52779186 A T KRT84 Missense_Mutation p.S62T 0.23 tolerated(0.24) possibly_damaging(0.899) TCGA-DK-AA6L-01 12 56151239 56151241 AAG - SARNP 3'UTR 0.36 TCGA-DK-AA6L-01 12 56532789 56532789 G T ESYT1 Nonsense_Mutation p.E872* 0.20 TCGA-DK-AA6L-01 12 56721348 56721348 G C PAN2 Nonsense_Mutation p.S240* 0.19 TCGA-DK-AA6L-01 12 56722090 56722090 G C PAN2 Missense_Mutation p.L169V 0.24 tolerated(0.32) benign(0.023) TCGA-DK-AA6L-01 12 56722374 56722374 G C PAN2 Missense_Mutation p.Q112E 0.21 deleterious(0) possibly_damaging(0.55) TCGA-DK-AA6L-01 12 56848060 56848060 C T MIP Missense_Mutation p.R113Q 0.22 deleterious(0.05) possibly_damaging(0.888) TCGA-DK-AA6L-01 12 57872871 57872871 C T ARHGAP9 Intron 0.12 TCGA-DK-AA6L-01 12 6632165 6632165 C A NCAPD2 Missense_Mutation p.A709D 0.21 tolerated(0.42) benign(0.066) TCGA-DK-AA6L-01 12 6923321 6923321 G A CD4 Silent p.L76L 0.17 TCGA-DK-AA6L-01 12 7014909 7014909 G C LRRC23 Missense_Mutation p.E38Q 0.21 tolerated(0.06) unknown(0) TCGA-DK-AA6L-01 12 7014918 7014918 G T LRRC23 Nonsense_Mutation p.E41* 0.24 TCGA-DK-AA6L-01 12 7047977 7047977 G C ATN1 Missense_Mutation p.E951Q 0.32 probably_damaging(0.992) TCGA-DK-AA6L-01 12 72372843 72372843 C G TPH2 Nonsense_Mutation p.S306* 0.28 TCGA-DK-AA6L-01 12 76740357 76740357 G C BBS10 Missense_Mutation p.Q470E 0.27 tolerated(0.75) benign(0.002) TCGA-DK-AA6L-01 12 78444904 78444904 C G NAV3 Silent p.L831L 0.22 TCGA-DK-AA6L-01 12 80714301 80714301 C T OTOGL Missense_Mutation p.S1292L 0.14 tolerated(0.17) benign(0.006) TCGA-DK-AA6L-01 12 8211823 8211823 A G C3AR1 Missense_Mutation p.L320S 0.58 tolerated(0.17) benign(0.038) TCGA-DK-AA6L-01 12 98925523 98925525 TCT - TMPO In_Frame_Del p.S159del 0.11 TCGA-DK-AA6L-01 13 101182437 101182437 C T PCCA 3'UTR 0.23 TCGA-DK-AA6L-01 13 23907016 23907016 G A SACS Missense_Mutation p.H3667Y 0.15 probably_damaging(0.977) TCGA-DK-AA6L-01 13 25826113 25826113 C T MTMR6 Silent p.E452E 0.22 TCGA-DK-AA6L-01 13 32937603 32937603 G C BRCA2 Missense_Mutation p.G2755A 0.52 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 13 39262552 39262552 C T FREM2 Silent p.F357F 0.16 TCGA-DK-AA6L-01 13 46577288 46577288 C G ZC3H13 Missense_Mutation p.K310N 0.13 unknown(0) TCGA-DK-AA6L-01 13 61987635 61987635 G A PCDH20 Silent p.I199I 0.11 TCGA-DK-AA6L-01 13 67800446 67800446 C T PCDH9 Missense_Mutation p.M709I 0.09 tolerated(0.4) benign(0.145) TCGA-DK-AA6L-01 13 99537984 99537984 C G DOCK9 Missense_Mutation p.K746N 0.12 deleterious(0) possibly_damaging(0.653) TCGA-DK-AA6L-01 14 105185199 105185199 G C INF2 3'UTR 0.18 TCGA-DK-AA6L-01 14 105239387 105239387 C A AKT1 Missense_Mutation p.G334W 0.19 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 14 105410235 105410235 G T AHNAK2 Silent p.L3851L 0.31 TCGA-DK-AA6L-01 14 105410637 105410637 G C AHNAK2 Silent p.L3717L 0.19 TCGA-DK-AA6L-01 14 105410874 105410874 G C AHNAK2 Missense_Mutation p.F3638L 0.21 probably_damaging(0.916) TCGA-DK-AA6L-01 14 20296334 20296334 C A OR4N2 Missense_Mutation p.H243N 0.21 deleterious(0) probably_damaging(0.936) TCGA-DK-AA6L-01 14 21957484 21957484 G A TOX4 Silent p.Q244Q 0.22 TCGA-DK-AA6L-01 14 21990189 21990189 G A SALL2 3'UTR 0.23 TCGA-DK-AA6L-01 14 22971263 22971263 G C TRAJ38 Silent p.L17L 0.13 TCGA-DK-AA6L-01 14 23371025 23371025 G A RBM23 Silent p.T438T 0.24 TCGA-DK-AA6L-01 14 33291559 33291559 C T AKAP6 Nonsense_Mutation p.Q1514* 0.21 TCGA-DK-AA6L-01 14 38679176 38679176 C G SSTR1 Silent p.V194V 0.19 TCGA-DK-AA6L-01 14 45414324 45414324 G C KLHL28 Missense_Mutation p.H270D 0.29 tolerated(0.21) benign(0) TCGA-DK-AA6L-01 14 52949610 52949610 C A TXNDC16 Silent p.V394V 0.59 TCGA-DK-AA6L-01 14 55468813 55468815 GAG AAGA WDHD1 Frame_Shift_Ins p.S230Ffs*20 0.23 TCGA-DK-AA6L-01 14 68352635 68352635 G C RAD51B Missense_Mutation p.E168Q 0.22 tolerated(0.09) benign(0.232) TCGA-DK-AA6L-01 14 74204000 74204000 C A ELMSAN1 Missense_Mutation p.D484Y 0.21 deleterious(0) possibly_damaging(0.855) TCGA-DK-AA6L-01 14 86088101 86088101 T C FLRT2 Silent p.P81P 0.53 TCGA-DK-AA6L-01 14 90756620 90756620 G A NRDE2 Missense_Mutation p.S725L 0.16 tolerated(0.07) benign(0.022) TCGA-DK-AA6L-01 14 91826008 91826008 C A CCDC88C Missense_Mutation p.M106I 0.18 tolerated(0.7) benign(0.026) TCGA-DK-AA6L-01 14 92472246 92472246 G C TRIP11 Missense_Mutation p.Q692E 0.15 tolerated(0.28) benign(0.009) TCGA-DK-AA6L-01 14 92472344 92472344 G A TRIP11 Missense_Mutation p.S659L 0.28 deleterious(0.04) benign(0.088) TCGA-DK-AA6L-01 14 94711959 94711959 C T PPP4R4 Silent p.I460I 0.36 TCGA-DK-AA6L-01 14 94956023 94956023 G A SERPINA12 Silent p.S329S 0.25 TCGA-DK-AA6L-01 15 102291905 102291905 C G DNM1P47 RNA 0.09 TCGA-DK-AA6L-01 15 25327956 25327956 G T SNORD116-16 RNA 0.17 TCGA-DK-AA6L-01 15 28483901 28483901 G A HERC2 Nonsense_Mutation p.Q1199* 0.12 TCGA-DK-AA6L-01 15 31197824 31197824 G C FAN1 Missense_Mutation p.E320Q 0.17 tolerated(0.08) benign(0.141) TCGA-DK-AA6L-01 15 34640862 34640862 C G NUTM1 Missense_Mutation p.L237V 0.16 deleterious(0) probably_damaging(0.91) TCGA-DK-AA6L-01 15 34649422 34649424 AGG - NUTM1 In_Frame_Del p.G1045del 0.21 TCGA-DK-AA6L-01 15 40898618 40898618 C G CASC5 Missense_Mutation p.Q35E 0.06 deleterious(0.03) possibly_damaging(0.79) TCGA-DK-AA6L-01 15 41794315 41794315 C T ITPKA Silent p.R308R 0.33 TCGA-DK-AA6L-01 15 42646576 42646576 C G GANC 3'Flank 0.29 TCGA-DK-AA6L-01 15 49422978 49422979 TT - COPS2 Frame_Shift_Del p.K335Dfs*12 0.23 TCGA-DK-AA6L-01 15 50474857 50474858 CT - SLC27A2 Frame_Shift_Del p.L79Hfs*34 0.25 TCGA-DK-AA6L-01 15 58471419 58471419 C G AQP9 Missense_Mutation p.I196M 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-DK-AA6L-01 15 62237952 62237952 G C VPS13C Missense_Mutation p.Q1704E 0.28 tolerated(0.36) possibly_damaging(0.626) TCGA-DK-AA6L-01 15 63069040 63069040 G A TLN2 Silent p.L1815L 0.16 TCGA-DK-AA6L-01 15 65667514 65667514 C T IGDCC3 Silent p.S110S 0.27 TCGA-DK-AA6L-01 15 66044866 66044866 G C DENND4A Missense_Mutation p.Q138E 0.13 deleterious(0) possibly_damaging(0.9) TCGA-DK-AA6L-01 15 68466151 68466151 C T PIAS1 Nonsense_Mutation p.Q364* 0.30 TCGA-DK-AA6L-01 15 69728977 69728977 G C KIF23 Missense_Mutation p.E491Q 0.30 tolerated(0.06) benign(0.184) TCGA-DK-AA6L-01 15 75143779 75143779 C T SCAMP2 Silent p.V129V 0.20 TCGA-DK-AA6L-01 15 84527554 84527554 G A ADAMTSL3 Missense_Mutation p.R255Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6L-01 15 85164959 85164959 C T ZSCAN2 Silent p.F511F 0.20 TCGA-DK-AA6L-01 15 90145032 90145032 C G TICRR Missense_Mutation p.Q798E 0.30 tolerated(0.62) benign(0.017) TCGA-DK-AA6L-01 15 91421998 91421998 G A FURIN Missense_Mutation p.R282Q 0.20 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6L-01 16 11940566 11940566 G C RSL1D1 Missense_Mutation p.F173L 0.11 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 16 11940693 11940693 G C RSL1D1 Missense_Mutation p.S131C 0.14 deleterious(0) possibly_damaging(0.895) TCGA-DK-AA6L-01 16 15728725 15728725 G C KIAA0430 Missense_Mutation p.Q299E 0.11 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-DK-AA6L-01 16 20748490 20748490 C T THUMPD1 Silent p.L258L 0.12 TCGA-DK-AA6L-01 16 30744638 30744638 C G SRCAP Silent p.L2055L 0.19 TCGA-DK-AA6L-01 16 30744748 30744748 C G SRCAP Missense_Mutation p.S2092C 0.16 probably_damaging(0.993) TCGA-DK-AA6L-01 16 30744967 30744967 C T SRCAP Silent p.F2114F 0.15 TCGA-DK-AA6L-01 16 3085428 3085428 C T CCDC64B Missense_Mutation p.E24K 0.17 deleterious(0.01) possibly_damaging(0.655) TCGA-DK-AA6L-01 16 31341697 31341697 C G ITGAM Missense_Mutation p.F1044L 0.43 tolerated(1) benign(0.018) TCGA-DK-AA6L-01 16 4745097 4745097 G C NUDT16L1 Missense_Mutation p.E185Q 0.20 tolerated(0.38) benign(0.001) TCGA-DK-AA6L-01 16 53709021 53709021 C G RPGRIP1L Missense_Mutation p.D264H 0.15 deleterious(0) possibly_damaging(0.832) TCGA-DK-AA6L-01 16 67916349 67916349 C T EDC4 Silent p.I1098I 0.24 TCGA-DK-AA6L-01 16 67984313 67984315 AAG - SLC12A4 In_Frame_Del p.F515del 0.10 TCGA-DK-AA6L-01 16 70954898 70954898 C T HYDIN Missense_Mutation p.E2461K 0.21 probably_damaging(0.953) TCGA-DK-AA6L-01 16 78005778 78005778 G A VAT1L Missense_Mutation p.R370Q 0.26 deleterious(0) possibly_damaging(0.893) TCGA-DK-AA6L-01 16 816939 816939 C G MSLN Silent p.L484L 0.30 TCGA-DK-AA6L-01 16 89351471 89351471 C T ANKRD11 Silent p.R493R 0.19 TCGA-DK-AA6L-01 17 10304713 10304713 G C MYH8 Missense_Mutation p.S996C 0.31 deleterious(0) benign(0.281) TCGA-DK-AA6L-01 17 16330068 16330068 G A TRPV2 Silent p.L376L 0.26 TCGA-DK-AA6L-01 17 16691293 16691293 C G CCDC144A 3'UTR 0.20 TCGA-DK-AA6L-01 17 18967288 18967288 C T SNORD3B-2 RNA 0.07 TCGA-DK-AA6L-01 17 21477543 21477543 G A AC138710.1 5'Flank 0.24 TCGA-DK-AA6L-01 17 26696963 26696963 C T VTN Missense_Mutation p.E57K 0.22 tolerated(0.07) possibly_damaging(0.507) TCGA-DK-AA6L-01 17 27042243 27042243 G C RAB34 Silent p.L218L 0.33 TCGA-DK-AA6L-01 17 28808204 28808204 G A GOSR1 Silent p.L25L 0.20 TCGA-DK-AA6L-01 17 3030774 3030774 C G OR1G1 Missense_Mutation p.Q24H 0.22 deleterious(0) probably_damaging(0.969) TCGA-DK-AA6L-01 17 3030815 3030815 C G OR1G1 Missense_Mutation p.E11Q 0.27 deleterious(0.03) benign(0.291) TCGA-DK-AA6L-01 17 37006572 37006572 C A RPL23 Intron 0.10 TCGA-DK-AA6L-01 17 37343762 37343762 G C CACNB1 Missense_Mutation p.F128L 0.27 deleterious(0) benign(0.098) TCGA-DK-AA6L-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.23 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6L-01 17 39674609 39674609 G C KRT15 Missense_Mutation p.F157L 0.21 tolerated(0.06) benign(0.403) TCGA-DK-AA6L-01 17 39887807 39887807 G C HAP1 Missense_Mutation p.S336C 0.23 tolerated(0.13) possibly_damaging(0.843) TCGA-DK-AA6L-01 17 39888950 39888950 G C HAP1 Intron 0.27 TCGA-DK-AA6L-01 17 39889022 39889022 G A HAP1 Silent p.V166V 0.23 TCGA-DK-AA6L-01 17 4087129 4087130 CA - ANKFY1 Frame_Shift_Del p.V634Afs*25 0.22 TCGA-DK-AA6L-01 17 43183062 43183062 G A NMT1 3'UTR 0.27 TCGA-DK-AA6L-01 17 4804226 4804226 G A C17orf107 3'UTR 0.35 TCGA-DK-AA6L-01 17 49067228 49067228 C A SPAG9 Nonsense_Mutation p.E875* 0.16 TCGA-DK-AA6L-01 17 56274522 56274522 C G EPX Missense_Mutation p.Q342E 0.18 tolerated(0.4) benign(0.028) TCGA-DK-AA6L-01 17 56676926 56676926 G C TEX14 Missense_Mutation p.Q600E 0.30 tolerated(0.25) benign(0.005) TCGA-DK-AA6L-01 17 63010910 63010910 C T GNA13 Missense_Mutation p.R200K 0.30 deleterious(0.03) benign(0.066) TCGA-DK-AA6L-01 17 65888148 65888148 G C BPTF Missense_Mutation p.E685Q 0.14 benign(0.049) TCGA-DK-AA6L-01 17 74090621 74090621 C T EXOC7 Missense_Mutation p.D228N 0.30 tolerated(0.33) probably_damaging(0.927) TCGA-DK-AA6L-01 17 74720008 74720008 G C JMJD6 Silent p.L217L 0.27 TCGA-DK-AA6L-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.30 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 17 76502881 76502881 C T DNAH17 Missense_Mutation p.R1571K 0.23 possibly_damaging(0.828) TCGA-DK-AA6L-01 17 78113852 78113852 C G EIF4A3 Missense_Mutation p.D154H 0.30 deleterious(0.02) probably_damaging(1) TCGA-DK-AA6L-01 17 79060254 79060254 G A BAIAP2 Silent p.K121K 0.14 TCGA-DK-AA6L-01 17 79687161 79687161 G C SLC25A10 3'UTR 0.17 TCGA-DK-AA6L-01 17 80037346 80037346 C T FASN Missense_Mutation p.A2429T 0.26 tolerated(0.05) probably_damaging(0.949) TCGA-DK-AA6L-01 17 80391584 80391584 C T HEXDC Silent p.F111F 0.14 TCGA-DK-AA6L-01 18 25570266 25570266 C T CDH2 Missense_Mutation p.E465K 0.21 tolerated(0.55) benign(0.041) TCGA-DK-AA6L-01 18 2740764 2740764 C G SMCHD1 Missense_Mutation p.S1193C 0.33 deleterious(0.04) benign(0.376) TCGA-DK-AA6L-01 18 30846942 30846942 C T CCDC178 Silent p.L449L 0.08 TCGA-DK-AA6L-01 18 32706973 32706973 C G MAPRE2 Silent p.A224A 0.10 TCGA-DK-AA6L-01 18 47010040 47010040 G C C18orf32 Missense_Mutation p.L27V 0.22 tolerated(0.46) benign(0.107) TCGA-DK-AA6L-01 18 47792789 47792789 C T CCDC11 5'UTR 0.26 TCGA-DK-AA6L-01 18 61597345 61597345 C - SERPINB10 Frame_Shift_Del p.L187Yfs*12 0.20 TCGA-DK-AA6L-01 18 66378621 66378621 C T TMX3 Missense_Mutation p.D41N 0.08 tolerated(0.21) benign(0.06) TCGA-DK-AA6L-01 18 72167109 72167109 C G CNDP2 Intron 0.17 TCGA-DK-AA6L-01 18 72345800 72345800 C G ZNF407 Nonsense_Mutation p.S942* 0.29 TCGA-DK-AA6L-01 18 74639256 74639256 G A ZNF236 Silent p.Q1397Q 0.28 TCGA-DK-AA6L-01 19 10577811 10577811 G C PDE4A Missense_Mutation p.Q725H 0.36 tolerated_low_confidence(0.16) benign(0.212) TCGA-DK-AA6L-01 19 11462756 11462756 G C CCDC159 Missense_Mutation p.E172Q 0.09 tolerated(0.21) benign(0.077) TCGA-DK-AA6L-01 19 11616852 11616852 C T ECSIT 3'UTR 0.17 TCGA-DK-AA6L-01 19 12502977 12502977 G C ZNF799 Missense_Mutation p.Q79E 0.23 tolerated(0.11) benign(0.146) TCGA-DK-AA6L-01 19 17370491 17370491 G A USHBP1 Silent p.S273S 0.16 TCGA-DK-AA6L-01 19 17628174 17628174 C G PGLS Silent p.L158L 0.19 TCGA-DK-AA6L-01 19 22155900 22155900 A T ZNF208 Missense_Mutation p.F646I 0.20 deleterious(0.02) possibly_damaging(0.641) TCGA-DK-AA6L-01 19 37879433 37879433 G C ZNF527 Missense_Mutation p.R161T 0.19 tolerated(0.37) benign(0.034) TCGA-DK-AA6L-01 19 38102883 38102883 G C ZNF540 Missense_Mutation p.Q234H 0.20 tolerated(0.12) benign(0.206) TCGA-DK-AA6L-01 19 39063847 39063847 G C RYR1 Missense_Mutation p.E4677Q 0.23 unknown(0) TCGA-DK-AA6L-01 19 39063898 39063898 G C RYR1 Missense_Mutation p.E4694Q 0.25 unknown(0) TCGA-DK-AA6L-01 19 40520312 40520312 C T ZNF546 Missense_Mutation p.H379Y 0.12 deleterious(0.01) benign(0.136) TCGA-DK-AA6L-01 19 41009994 41009994 C G SPTBN4 Silent p.V540V 0.10 TCGA-DK-AA6L-01 19 41025353 41025353 G A SPTBN4 Missense_Mutation p.M983I 0.16 tolerated(0.13) benign(0.036) TCGA-DK-AA6L-01 19 41631505 41631505 C T CYP2F1 Silent p.F420F 0.17 TCGA-DK-AA6L-01 19 45493737 45493739 TCC - CLPTM1 In_Frame_Del p.L408del 0.15 TCGA-DK-AA6L-01 19 48201923 48201923 C T GLTSCR1 Missense_Mutation p.S1094F 0.32 probably_damaging(0.995) TCGA-DK-AA6L-01 19 48789341 48789341 G A ZNF114 Missense_Mutation p.D154N 0.28 tolerated(0.9) possibly_damaging(0.539) TCGA-DK-AA6L-01 19 49206791 49206791 G T FUT2 Missense_Mutation p.G193V 0.42 tolerated(0.41) benign(0.013) TCGA-DK-AA6L-01 19 51767247 51767247 C T SIGLECL1 5'UTR 0.18 TCGA-DK-AA6L-01 19 52130413 52130413 G C SIGLEC5 Missense_Mutation p.I457M 0.20 deleterious(0) possibly_damaging(0.481) TCGA-DK-AA6L-01 19 53383997 53383997 C G ZNF320 Missense_Mutation p.R461T 0.12 tolerated(0.06) possibly_damaging(0.49) TCGA-DK-AA6L-01 19 53384046 53384046 C G ZNF320 Missense_Mutation p.D445H 0.14 deleterious(0.02) possibly_damaging(0.617) TCGA-DK-AA6L-01 19 53571545 53571545 G T ZNF160 Missense_Mutation p.L748M 0.13 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6L-01 19 55146144 55146144 A G LILRB1 Silent p.L472L 0.45 TCGA-DK-AA6L-01 19 55435178 55435180 TTC - NLRP7 In_Frame_Del p.K1014del 0.30 TCGA-DK-AA6L-01 19 55889536 55889536 G A TMEM190 Missense_Mutation p.G167S 0.48 tolerated_low_confidence(0.12) unknown(0) TCGA-DK-AA6L-01 19 56160591 56160591 G C CCDC106 Missense_Mutation p.E18Q 0.12 deleterious(0.01) possibly_damaging(0.631) TCGA-DK-AA6L-01 19 56515151 56515151 G A NLRP5 Silent p.L44L 0.31 TCGA-DK-AA6L-01 19 56539791 56539791 C T NLRP5 Missense_Mutation p.P731L 0.49 tolerated(0.13) benign(0.003) TCGA-DK-AA6L-01 19 5844452 5844452 G C FUT3 Missense_Mutation p.I133M 0.32 deleterious(0.02) benign(0.192) TCGA-DK-AA6L-01 19 58601277 58601277 C T ZSCAN18 Missense_Mutation p.A176T 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-DK-AA6L-01 19 58772379 58772381 AGG - ZNF544 In_Frame_Del p.E137del 0.09 TCGA-DK-AA6L-01 19 58991884 58991884 C G ZNF446 Missense_Mutation p.P382A 0.11 tolerated(0.82) benign(0.001) TCGA-DK-AA6L-01 19 965073 965073 C T ARID3A Silent p.I397I 0.18 TCGA-DK-AA6L-01 1 100382173 100382173 G T AGL Missense_Mutation p.G1456V 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-DK-AA6L-01 1 103484403 103484403 C T COL11A1 Missense_Mutation p.E441K 0.21 probably_damaging(0.999) TCGA-DK-AA6L-01 1 104160103 104160103 G A AMY2A Nonsense_Mutation p.W14* 0.19 TCGA-DK-AA6L-01 1 10477070 10477074 TCATC ATT PGD Frame_Shift_Del p.S291Ifs*5 0.32 TCGA-DK-AA6L-01 1 109780516 109780516 C T SARS 3'UTR 0.21 TCGA-DK-AA6L-01 1 110018297 110018297 C T SYPL2 Missense_Mutation p.S75F 0.21 deleterious(0.02) benign(0.003) TCGA-DK-AA6L-01 1 110882504 110882504 A G RBM15 Silent p.S159S 0.13 TCGA-DK-AA6L-01 1 110882508 110882508 C T RBM15 Missense_Mutation p.P161S 0.14 tolerated(0.06) benign(0) TCGA-DK-AA6L-01 1 110883001 110883001 G C RBM15 Missense_Mutation p.R325P 0.09 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6L-01 1 110883036 110883036 G C RBM15 Missense_Mutation p.E337Q 0.10 deleterious(0.03) benign(0.043) TCGA-DK-AA6L-01 1 112298298 112298298 C G DDX20 5'UTR 0.11 TCGA-DK-AA6L-01 1 112998576 112998576 G A CTTNBP2NL Silent p.V154V 0.10 TCGA-DK-AA6L-01 1 116206801 116206801 G C VANGL1 Missense_Mutation p.E242Q 0.13 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 1 120279737 120279737 G C PHGDH Missense_Mutation p.E265Q 0.16 deleterious(0) probably_damaging(0.965) TCGA-DK-AA6L-01 1 120539858 120539858 G A NOTCH2 Silent p.L171L 0.08 TCGA-DK-AA6L-01 1 1277794 1277794 G A DVL1 Missense_Mutation p.P104L 0.47 tolerated(0.18) benign(0.083) TCGA-DK-AA6L-01 1 144879302 144879302 G C PDE4DIP Nonsense_Mutation p.S1383* 0.09 TCGA-DK-AA6L-01 1 145290457 145290457 C T NOTCH2NL 3'Flank 0.05 TCGA-DK-AA6L-01 1 145522727 145522727 C G PEX11B Silent p.L196L 0.20 TCGA-DK-AA6L-01 1 145525087 145525087 C G ITGA10 Missense_Mutation p.H8D 0.25 tolerated(0.2) benign(0.021) TCGA-DK-AA6L-01 1 145525095 145525095 C G ITGA10 Missense_Mutation p.F10L 0.27 tolerated(0.69) benign(0.001) TCGA-DK-AA6L-01 1 146399590 146399590 G C NBPF12 Missense_Mutation p.E177Q 0.07 possibly_damaging(0.617) TCGA-DK-AA6L-01 1 148025789 148025789 C G NBPF14 Missense_Mutation p.E21Q 0.05 tolerated(0.06) benign(0.321) TCGA-DK-AA6L-01 1 149859051 149859051 G C HIST2H2AB 3'UTR 0.15 TCGA-DK-AA6L-01 1 149885393 149885393 G A SV2A 5'UTR 0.19 TCGA-DK-AA6L-01 1 151131555 151131555 C G TNFAIP8L2 Missense_Mutation p.L128V 0.17 tolerated(0.09) probably_damaging(0.97) TCGA-DK-AA6L-01 1 152282166 152282166 C T FLG Silent p.Q1732Q 0.19 TCGA-DK-AA6L-01 1 153915470 153915470 C T DENND4B Missense_Mutation p.E152K 0.25 tolerated(0.17) benign(0.11) TCGA-DK-AA6L-01 1 155265067 155265067 C T PKLR Silent p.V178V 0.19 TCGA-DK-AA6L-01 1 155288095 155288095 C G FDPS Intron 0.23 TCGA-DK-AA6L-01 1 155896523 155896523 C T KIAA0907 Missense_Mutation p.A209T 0.35 tolerated(0.34) possibly_damaging(0.547) TCGA-DK-AA6L-01 1 158619708 158619708 C G SPTA1 Missense_Mutation p.Q1169H 0.22 tolerated(0.05) probably_damaging(0.963) TCGA-DK-AA6L-01 1 158687131 158687131 A C OR6K3 Missense_Mutation p.L259V 0.16 tolerated(0.84) probably_damaging(0.986) TCGA-DK-AA6L-01 1 159409593 159409593 G A OR10J1 Silent p.E15E 0.39 TCGA-DK-AA6L-01 1 16464492 16464492 G A EPHA2 Missense_Mutation p.H390Y 0.24 tolerated(0.78) benign(0.02) TCGA-DK-AA6L-01 1 16621317 16621317 C T FBXO42 Missense_Mutation p.D155N 0.24 tolerated(0.05) possibly_damaging(0.878) TCGA-DK-AA6L-01 1 169511863 169511863 G A F5 Missense_Mutation p.S822F 0.16 tolerated(0.06) possibly_damaging(0.667) TCGA-DK-AA6L-01 1 17292234 17292234 C T CROCC Silent p.L1474L 0.18 TCGA-DK-AA6L-01 1 173776540 173776540 G C CENPL Silent p.L95L 0.16 TCGA-DK-AA6L-01 1 17395467 17395467 G C PADI2 3'UTR 0.29 TCGA-DK-AA6L-01 1 177030361 177030361 C T ASTN1 Nonsense_Mutation p.W108* 0.21 TCGA-DK-AA6L-01 1 177247811 177247811 G A BRINP2 Silent p.L375L 0.14 TCGA-DK-AA6L-01 1 177936898 177936898 T C SEC16B Silent p.A73A 0.39 TCGA-DK-AA6L-01 1 186147734 186147734 C T HMCN1 Missense_Mutation p.P5377L 0.22 benign(0.035) TCGA-DK-AA6L-01 1 186322851 186322851 C G TPR Missense_Mutation p.R768T 0.14 benign(0.01) TCGA-DK-AA6L-01 1 19443874 19443874 C T UBR4 Missense_Mutation p.R3555Q 0.35 possibly_damaging(0.885) TCGA-DK-AA6L-01 1 198608361 198608361 C T PTPRC 5'UTR 0.08 TCGA-DK-AA6L-01 1 201981243 201981243 G A ELF3 Missense_Mutation p.E108K 0.12 tolerated(0.1) benign(0.43) TCGA-DK-AA6L-01 1 202894178 202894178 C G KLHL12 Missense_Mutation p.R38T 0.28 tolerated(0.56) benign(0.136) TCGA-DK-AA6L-01 1 204415234 204415234 C T PIK3C2B Missense_Mutation p.R843Q 0.22 deleterious(0.01) possibly_damaging(0.691) TCGA-DK-AA6L-01 1 204416581 204416581 C T PIK3C2B Silent p.Q824Q 0.14 TCGA-DK-AA6L-01 1 205898416 205898416 G A SLC26A9 Silent p.S262S 0.14 TCGA-DK-AA6L-01 1 207105038 207105038 C G PIGR Missense_Mutation p.E706D 0.30 deleterious(0.01) possibly_damaging(0.853) TCGA-DK-AA6L-01 1 207753875 207753875 C T CR1 Silent p.F1711F 0.24 TCGA-DK-AA6L-01 1 210006542 210006542 C G DIEXF Missense_Mutation p.S134C 0.14 tolerated(0.1) benign(0.195) TCGA-DK-AA6L-01 1 216692536 216692536 C G ESRRG Missense_Mutation p.E376Q 0.28 deleterious(0) benign(0.327) TCGA-DK-AA6L-01 1 226127072 226127072 G C LEFTY2 Silent p.L242L 0.29 TCGA-DK-AA6L-01 1 228495899 228495899 C G OBSCN Missense_Mutation p.A5142G 0.19 possibly_damaging(0.721) TCGA-DK-AA6L-01 1 228521390 228521390 C G OBSCN Missense_Mutation p.I6278M 0.31 possibly_damaging(0.581) TCGA-DK-AA6L-01 1 231473397 231473397 G C EXOC8 Missense_Mutation p.S32W 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA6L-01 1 231474085 231474085 G T SPRTN 5'UTR 0.17 TCGA-DK-AA6L-01 1 231474129 231474129 G T SPRTN 5'UTR 0.24 TCGA-DK-AA6L-01 1 234593477 234593477 G A TARBP1 Missense_Mutation p.S553L 0.21 tolerated(0.08) possibly_damaging(0.548) TCGA-DK-AA6L-01 1 236141259 236141259 C T NID1 Missense_Mutation p.G1218S 0.20 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6L-01 1 236750706 236750706 C G HEATR1 Missense_Mutation p.E571Q 0.10 tolerated(0.44) benign(0.007) TCGA-DK-AA6L-01 1 237550635 237550635 C T RYR2 Missense_Mutation p.L211F 0.16 possibly_damaging(0.833) TCGA-DK-AA6L-01 1 237947804 237947804 G A RYR2 Silent p.L4264L 0.28 TCGA-DK-AA6L-01 1 238053203 238053203 C G ZP4 Missense_Mutation p.E122Q 0.15 tolerated(0.05) benign(0.044) TCGA-DK-AA6L-01 1 247737658 247737658 G T GCSAML Missense_Mutation p.D128Y 0.46 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6L-01 1 27680247 27680250 TGAG C SYTL1 In_Frame_Del p.E533del 0.10 TCGA-DK-AA6L-01 1 28167600 28167600 C G PPP1R8 Nonsense_Mutation p.S116* 0.20 TCGA-DK-AA6L-01 1 28167703 28167703 C G PPP1R8 Silent p.L150L 0.08 TCGA-DK-AA6L-01 1 32660773 32660773 G A TXLNA Missense_Mutation p.E540K 0.12 tolerated_low_confidence(0.2) benign(0.101) TCGA-DK-AA6L-01 1 33412160 33412160 G A RNF19B Missense_Mutation p.S331F 0.15 deleterious(0) possibly_damaging(0.826) TCGA-DK-AA6L-01 1 3638708 3638708 G C TP73 Missense_Mutation p.E185Q 0.29 deleterious(0.03) benign(0.118) TCGA-DK-AA6L-01 1 39340275 39340275 G A GJA9 Missense_Mutation p.S499F 0.11 deleterious(0.02) benign(0.119) TCGA-DK-AA6L-01 1 39341820 39341820 G A GJA9 5'UTR 0.15 TCGA-DK-AA6L-01 1 43232625 43232625 C T LEPRE1 Silent p.L6L 0.16 TCGA-DK-AA6L-01 1 44482747 44482747 C G SLC6A9 Missense_Mutation p.G20A 0.18 tolerated_low_confidence(0.5) probably_damaging(0.981) TCGA-DK-AA6L-01 1 44596235 44596235 G A KLF17 Missense_Mutation p.R326H 0.17 deleterious(0.02) possibly_damaging(0.512) TCGA-DK-AA6L-01 1 45226118 45226118 G C KIF2C Missense_Mutation p.E512Q 0.14 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 1 45553639 45553639 G T ZSWIM5 Missense_Mutation p.T289K 0.31 deleterious(0) unknown(0) TCGA-DK-AA6L-01 1 47610566 47610566 C G CYP4A22 Silent p.L382L 0.10 TCGA-DK-AA6L-01 1 52280243 52280243 C G NRD1 Missense_Mutation p.Q601H 0.12 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6L-01 1 52744229 52744229 G A ZFYVE9 Missense_Mutation p.D938N 0.16 tolerated(0.14) probably_damaging(0.999) TCGA-DK-AA6L-01 1 54474692 54474692 G T LDLRAD1 Missense_Mutation p.S194Y 0.18 tolerated(0.56) possibly_damaging(0.807) TCGA-DK-AA6L-01 1 54474748 54474748 G A LDLRAD1 Silent p.F175F 0.17 TCGA-DK-AA6L-01 1 54506466 54506466 C T TMEM59 Missense_Mutation p.D224N 0.15 tolerated(0.28) benign(0.002) TCGA-DK-AA6L-01 1 57347236 57347236 G C C8A Missense_Mutation p.E195Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6L-01 1 6173060 6173060 T C CHD5 Splice_Site p.X1638_splice 0.33 TCGA-DK-AA6L-01 1 62588719 62588719 G C INADL Missense_Mutation p.E1678Q 0.15 deleterious(0.01) probably_damaging(0.919) TCGA-DK-AA6L-01 1 62913167 62913167 G C USP1 Missense_Mutation p.E469Q 0.15 tolerated(0.05) possibly_damaging(0.596) TCGA-DK-AA6L-01 1 78187749 78187749 G A USP33 Missense_Mutation p.P539S 0.13 tolerated(0.53) possibly_damaging(0.902) TCGA-DK-AA6L-01 1 84701071 84701071 G A PRKACB 3'UTR 0.20 TCGA-DK-AA6L-01 1 85331294 85331294 G A LPAR3 Silent p.L170L 0.11 TCGA-DK-AA6L-01 1 92944155 92944155 G C GFI1 Missense_Mutation p.F360L 0.13 deleterious(0.02) possibly_damaging(0.81) TCGA-DK-AA6L-01 20 1552378 1552378 C G SIRPB1 Missense_Mutation p.E247Q 0.12 tolerated(0.12) benign(0.031) TCGA-DK-AA6L-01 20 33568475 33568475 G A MYH7B Missense_Mutation p.R188H 0.18 probably_damaging(0.999) TCGA-DK-AA6L-01 20 34091601 34091601 C A CEP250 Missense_Mutation p.Q1802K 0.15 benign(0.292) TCGA-DK-AA6L-01 20 36634674 36634674 C T TTI1 Missense_Mutation p.E810K 0.15 tolerated(0.1) benign(0.125) TCGA-DK-AA6L-01 20 43804680 43804680 G C PI3 Missense_Mutation p.L86F 0.20 tolerated(0.23) benign(0.139) TCGA-DK-AA6L-01 20 60963554 60963554 C T RPS21 3'UTR 0.34 TCGA-DK-AA6L-01 20 62324551 62324551 C G RTEL1 Missense_Mutation p.I993M 0.15 tolerated(0.2) benign(0.187) TCGA-DK-AA6L-01 20 62326724 62326724 C A RTEL1 Silent p.I1205I 0.13 TCGA-DK-AA6L-01 21 31538668 31538668 G C CLDN17 Missense_Mutation p.L90V 0.31 deleterious(0.04) benign(0.319) TCGA-DK-AA6L-01 21 34889799 34889799 C T GART Missense_Mutation p.E607K 0.28 tolerated(0.16) benign(0.361) TCGA-DK-AA6L-01 21 37537095 37537095 G A DOPEY2 Missense_Mutation p.E22K 0.23 deleterious(0.01) probably_damaging(0.928) TCGA-DK-AA6L-01 21 45089830 45089830 G A RRP1B Missense_Mutation p.D66N 0.18 deleterious(0.02) possibly_damaging(0.511) TCGA-DK-AA6L-01 21 47549168 47549168 G A COL6A2 Intron 0.40 TCGA-DK-AA6L-01 22 20760952 20760952 C T ZNF74 Silent p.L543L 0.32 TCGA-DK-AA6L-01 22 21799328 21799328 C A HIC2 Silent p.V48V 0.25 TCGA-DK-AA6L-01 22 24836864 24836864 C T ADORA2A Silent p.L216L 0.33 TCGA-DK-AA6L-01 22 31688367 31688367 A C PIK3IP1 5'UTR 0.84 TCGA-DK-AA6L-01 22 32841663 32841663 C T BPIFC Missense_Mutation p.E185K 0.16 tolerated(0.39) benign(0.032) TCGA-DK-AA6L-01 22 35779096 35779096 C T HMOX1 Intron 0.11 TCGA-DK-AA6L-01 22 35779148 35779148 C G HMOX1 Missense_Mutation p.H25D 0.14 deleterious(0) probably_damaging(0.962) TCGA-DK-AA6L-01 22 41252444 41252444 C A ST13 Missense_Mutation p.W34L 0.65 tolerated(0.12) benign(0.008) TCGA-DK-AA6L-01 2 103119939 103119939 G C SLC9A4 Missense_Mutation p.K251N 0.09 tolerated(0.09) possibly_damaging(0.688) TCGA-DK-AA6L-01 2 105984105 105984105 G A FHL2 Silent p.F141F 0.17 TCGA-DK-AA6L-01 2 114256933 114256933 G T FOXD4L1 Nonsense_Mutation p.E34* 0.09 TCGA-DK-AA6L-01 2 121708921 121708921 C T GLI2 Silent p.H119H 0.19 TCGA-DK-AA6L-01 2 149402731 149402731 G A EPC2 Missense_Mutation p.E49K 0.17 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 2 150071248 150071248 G A LYPD6B 3'UTR 0.19 TCGA-DK-AA6L-01 2 157183310 157183310 G A NR4A2 Silent p.F427F 0.13 TCGA-DK-AA6L-01 2 15758387 15758387 G C DDX1 Missense_Mutation p.R400T 0.41 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 2 160287552 160287552 C T BAZ2B Silent p.L672L 0.10 TCGA-DK-AA6L-01 2 160289325 160289325 C T BAZ2B Missense_Mutation p.D615N 0.22 possibly_damaging(0.539) TCGA-DK-AA6L-01 2 1647243 1647243 C A PXDN Silent p.R1283R 0.58 TCGA-DK-AA6L-01 2 168107326 168107326 T C XIRP2 Missense_Mutation p.S3142P 0.15 benign(0.128) TCGA-DK-AA6L-01 2 170606147 170606147 G C KLHL23 Missense_Mutation p.E528Q 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6L-01 2 174131059 174131059 G - MLTK Frame_Shift_Del p.G662Afs*170 0.17 TCGA-DK-AA6L-01 2 175436669 175436669 C T WIPF1 Silent p.Q288Q 0.17 TCGA-DK-AA6L-01 2 178740591 178740591 C G PDE11A Missense_Mutation p.E454D 0.17 tolerated(0.46) benign(0.007) TCGA-DK-AA6L-01 2 179308099 179308099 G T PRKRA Missense_Mutation p.H137N 0.17 deleterious(0.01) benign(0.193) TCGA-DK-AA6L-01 2 179424635 179424635 G T TTN Missense_Mutation p.P28742T 0.25 TCGA-DK-AA6L-01 2 179582846 179582846 G C TTN Missense_Mutation p.S8296C 0.33 TCGA-DK-AA6L-01 2 192255167 192255167 G C MYO1B Missense_Mutation p.R644T 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6L-01 2 193049177 193049177 G T TMEFF2 Silent p.S105S 0.15 TCGA-DK-AA6L-01 2 193049178 193049178 G T TMEFF2 Missense_Mutation p.S105Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 2 199011554 199011554 G T PLCL1 Missense_Mutation p.M1052I 0.15 tolerated(0.11) benign(0.028) TCGA-DK-AA6L-01 2 200820455 200820455 G A C2orf47 5'UTR 0.32 TCGA-DK-AA6L-01 2 202569889 202569889 G A ALS2 Missense_Mutation p.S1554L 0.17 deleterious(0) probably_damaging(0.93) TCGA-DK-AA6L-01 2 204591658 204591658 C A CD28 Missense_Mutation p.P119T 0.19 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 2 21249812 21249812 C G APOB Missense_Mutation p.E698Q 0.16 probably_damaging(0.998) TCGA-DK-AA6L-01 2 216960915 216960915 G C TMEM169 Missense_Mutation p.E77Q 0.18 tolerated(0.49) benign(0.247) TCGA-DK-AA6L-01 2 234871945 234871945 G A TRPM8 Missense_Mutation p.R558Q 0.39 tolerated(0.45) possibly_damaging(0.656) TCGA-DK-AA6L-01 2 234923250 234923250 C T TRPM8 Silent p.I1103I 0.27 TCGA-DK-AA6L-01 2 286344 286344 C G FAM150B Splice_Site p.X85_splice 0.15 TCGA-DK-AA6L-01 2 33534596 33534596 C T LTBP1 Nonsense_Mutation p.Q1193* 0.21 TCGA-DK-AA6L-01 2 38301701 38301701 C G CYP1B1 Missense_Mutation p.L277F 0.27 tolerated(0.08) benign(0.042) TCGA-DK-AA6L-01 2 38804675 38804675 C G HNRNPLL Splice_Site p.X263_splice 0.13 TCGA-DK-AA6L-01 2 47703708 47703708 C G MSH2 Silent p.L736L 0.15 TCGA-DK-AA6L-01 2 50779813 50779813 C - NRXN1 Frame_Shift_Del p.S598Qfs*4 0.22 TCGA-DK-AA6L-01 2 55527025 55527025 C G CCDC88A Missense_Mutation p.R1591T 0.15 deleterious(0) possibly_damaging(0.653) TCGA-DK-AA6L-01 2 61455988 61455988 C T USP34 Missense_Mutation p.E2448K 0.16 deleterious(0) possibly_damaging(0.864) TCGA-DK-AA6L-01 2 67631633 67631633 G A ETAA1 Missense_Mutation p.D607N 0.37 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 2 72361941 72361941 G A CYP26B1 Silent p.L270L 0.22 TCGA-DK-AA6L-01 2 74784211 74784211 G A DOK1 Silent p.K472K 0.14 TCGA-DK-AA6L-01 2 75061733 75061733 A T HK2 Missense_Mutation p.Y9F 0.71 tolerated(0.91) benign(0.003) TCGA-DK-AA6L-01 2 86433233 86433233 C G MRPL35 Missense_Mutation p.I16M 0.28 tolerated(0.05) possibly_damaging(0.491) TCGA-DK-AA6L-01 2 88367516 88367516 G A SMYD1 Missense_Mutation p.D45N 0.22 tolerated(0.14) possibly_damaging(0.821) TCGA-DK-AA6L-01 2 97530979 97530979 T C SEMA4C Missense_Mutation p.H199R 0.35 tolerated(0.35) benign(0.012) TCGA-DK-AA6L-01 2 99861893 99861893 C G LYG2 Missense_Mutation p.E71D 0.15 tolerated(0.07) benign(0.01) TCGA-DK-AA6L-01 3 100087946 100087946 C G TOMM70A Missense_Mutation p.D496H 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6L-01 3 10491107 10491107 C T ATP2B2 Missense_Mutation p.E41K 0.19 deleterious(0.02) probably_damaging(0.977) TCGA-DK-AA6L-01 3 105400443 105400443 C G CBLB Missense_Mutation p.D770H 0.22 tolerated_low_confidence(0.08) benign(0.36) TCGA-DK-AA6L-01 3 108682317 108682317 C G MORC1 Missense_Mutation p.D915H 0.14 deleterious(0) possibly_damaging(0.73) TCGA-DK-AA6L-01 3 109031416 109031416 C T DPPA2 Missense_Mutation p.E53K 0.16 tolerated(1) benign(0.001) TCGA-DK-AA6L-01 3 111632253 111632253 G A PHLDB2 Missense_Mutation p.D475N 0.11 tolerated(0.09) possibly_damaging(0.682) TCGA-DK-AA6L-01 3 113697758 113697758 C T KIAA1407 Missense_Mutation p.D803N 0.11 tolerated(0.11) benign(0.128) TCGA-DK-AA6L-01 3 113955310 113955310 G C ZNF80 Missense_Mutation p.F204L 0.14 tolerated(1) possibly_damaging(0.651) TCGA-DK-AA6L-01 3 118931411 118931411 G A B4GALT4 Silent p.F340F 0.07 TCGA-DK-AA6L-01 3 121605230 121605230 G T EAF2 Missense_Mutation p.D260Y 0.08 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DK-AA6L-01 3 123634183 123634183 C G CCDC14 Missense_Mutation p.E728Q 0.09 deleterious(0.01) possibly_damaging(0.859) TCGA-DK-AA6L-01 3 125874320 125874320 C G ALDH1L1 Missense_Mutation p.E195D 0.40 tolerated_low_confidence(0.89) possibly_damaging(0.482) TCGA-DK-AA6L-01 3 13378404 13378404 G A NUP210 Silent p.V1189V 0.24 TCGA-DK-AA6L-01 3 134266193 134266193 C G CEP63 Missense_Mutation p.L316V 0.14 tolerated(0.17) benign(0.085) TCGA-DK-AA6L-01 3 137849773 137849773 G C A4GNT Nonsense_Mutation p.S109* 0.12 TCGA-DK-AA6L-01 3 137849806 137849806 G C A4GNT Nonsense_Mutation p.S98* 0.11 TCGA-DK-AA6L-01 3 140178491 140178491 G A CLSTN2 Missense_Mutation p.D368N 0.11 tolerated(0.21) benign(0.099) TCGA-DK-AA6L-01 3 142403115 142403115 G A PLS1 Missense_Mutation p.E256K 0.33 deleterious(0.04) benign(0.062) TCGA-DK-AA6L-01 3 142403177 142403177 G A PLS1 Silent p.V276V 0.20 TCGA-DK-AA6L-01 3 150690455 150690455 C G CLRN1 Missense_Mutation p.G14A 0.18 tolerated(0.14) probably_damaging(0.965) TCGA-DK-AA6L-01 3 164907342 164907342 G C SLITRK3 Missense_Mutation p.S426C 0.05 deleterious(0) probably_damaging(0.969) TCGA-DK-AA6L-01 3 169710401 169710401 C A SEC62 Silent p.L250L 0.10 TCGA-DK-AA6L-01 3 171427406 171427406 G C PLD1 Silent p.L335L 0.24 TCGA-DK-AA6L-01 3 176769430 176769430 G C TBL1XR1 Missense_Mutation p.Q97E 0.15 tolerated(0.34) benign(0.011) TCGA-DK-AA6L-01 3 183639155 183639155 G C ABCC5 Missense_Mutation p.S1416C 0.06 deleterious(0.03) possibly_damaging(0.469) TCGA-DK-AA6L-01 3 18457502 18457502 T C SATB1 Missense_Mutation p.H171R 0.23 deleterious(0.04) benign(0.046) TCGA-DK-AA6L-01 3 185775019 185775019 C G ETV5 Missense_Mutation p.E352Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6L-01 3 194146103 194146103 C A ATP13A3 Missense_Mutation p.G1094V 0.15 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6L-01 3 196802722 196802722 C T DLG1 Intron 0.09 TCGA-DK-AA6L-01 3 197422853 197422853 C T KIAA0226 Splice_Site p.X453_splice 0.13 TCGA-DK-AA6L-01 3 40293383 40293383 G C MYRIP Missense_Mutation p.E814Q 0.22 deleterious(0.05) probably_damaging(0.954) TCGA-DK-AA6L-01 3 48337638 48337638 G C NME6 Missense_Mutation p.F76L 0.53 deleterious(0) probably_damaging(0.949) TCGA-DK-AA6L-01 3 4854913 4854913 G A ITPR1 Missense_Mutation p.R2504K 0.19 tolerated(0.94) benign(0.001) TCGA-DK-AA6L-01 3 49011238 49011238 C G ARIH2 Missense_Mutation p.H293D 0.24 deleterious(0.01) benign(0.138) TCGA-DK-AA6L-01 3 49017876 49017876 G C ARIH2 Missense_Mutation p.G402R 0.36 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 3 52729269 52729269 G C GLT8D1 Missense_Mutation p.L288V 0.34 deleterious(0.01) probably_damaging(0.923) TCGA-DK-AA6L-01 3 53781433 53781433 T - CACNA1D Frame_Shift_Del p.M1111Rfs*49 0.21 TCGA-DK-AA6L-01 3 58134373 58134373 C T FLNB Intron 0.34 TCGA-DK-AA6L-01 3 58134542 58134542 C T FLNB Silent p.F2049F 0.38 TCGA-DK-AA6L-01 4 101946991 101946991 A T PPP3CA 3'UTR 0.26 TCGA-DK-AA6L-01 4 108641343 108641343 G A PAPSS1 5'UTR 0.11 TCGA-DK-AA6L-01 4 110223129 110223129 C G COL25A1 Missense_Mutation p.R16T 0.34 tolerated_low_confidence(0.17) unknown(0) TCGA-DK-AA6L-01 4 114274431 114274431 G A ANK2 Missense_Mutation p.E1553K 0.28 probably_damaging(0.993) TCGA-DK-AA6L-01 4 119947816 119947816 G A SYNPO2 Missense_Mutation p.E98K 0.28 deleterious(0.02) benign(0.405) TCGA-DK-AA6L-01 4 120181672 120181672 G A USP53 Missense_Mutation p.G229D 0.26 deleterious(0.01) probably_damaging(1) TCGA-DK-AA6L-01 4 120221638 120221638 C T C4orf3 Missense_Mutation p.R151Q 0.29 deleterious_low_confidence(0.02) benign(0.417) TCGA-DK-AA6L-01 4 1208208 1208208 C G CTBP1 Missense_Mutation p.E272D 0.43 tolerated(0.08) benign(0.236) TCGA-DK-AA6L-01 4 151765314 151765314 G A LRBA Missense_Mutation p.L1503F 0.28 tolerated(0.57) benign(0.002) TCGA-DK-AA6L-01 4 17590557 17590557 G A LAP3 Missense_Mutation p.E274K 0.17 tolerated(0.21) benign(0.009) TCGA-DK-AA6L-01 4 20619267 20619267 G C SLIT2 Missense_Mutation p.D1448H 0.19 deleterious(0) possibly_damaging(0.717) TCGA-DK-AA6L-01 4 2275008 2275008 C T ZFYVE28 Missense_Mutation p.D739N 0.19 deleterious(0) possibly_damaging(0.786) TCGA-DK-AA6L-01 4 40778148 40778148 C G NSUN7 Nonsense_Mutation p.S303* 0.28 TCGA-DK-AA6L-01 4 40778196 40778196 C G NSUN7 Nonsense_Mutation p.S319* 0.18 TCGA-DK-AA6L-01 4 41526462 41526462 G C LIMCH1 Missense_Mutation p.K68N 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 4 57337902 57337902 G A SRP72 Missense_Mutation p.E83K 0.30 deleterious(0) probably_damaging(0.968) TCGA-DK-AA6L-01 4 65194253 65194253 C G TECRL Missense_Mutation p.R103P 0.24 deleterious(0) possibly_damaging(0.899) TCGA-DK-AA6L-01 4 66197671 66197671 T A EPHA5 Intron 0.44 TCGA-DK-AA6L-01 4 7042990 7042990 C T CCDC96 3'UTR 0.11 TCGA-DK-AA6L-01 4 7043792 7043792 C G CCDC96 Missense_Mutation p.E292Q 0.16 deleterious(0.02) probably_damaging(0.92) TCGA-DK-AA6L-01 4 70462006 70462006 T C UGT2A1 Missense_Mutation p.N320D 0.47 deleterious(0.02) benign(0.188) TCGA-DK-AA6L-01 4 76882401 76882401 G C SDAD1 Silent p.L414L 0.25 TCGA-DK-AA6L-01 5 121776413 121776413 C A SNCAIP Missense_Mutation p.H462Q 0.27 deleterious(0.03) probably_damaging(0.947) TCGA-DK-AA6L-01 5 137902699 137902699 G C HSPA9 Missense_Mutation p.F290L 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-AA6L-01 5 140166574 140166574 C T PCDHA1 Silent p.L233L 0.33 TCGA-DK-AA6L-01 5 140616380 140616380 G A PCDHB18 RNA 0.28 TCGA-DK-AA6L-01 5 140810888 140810888 G A PCDHGA12 Missense_Mutation p.G188S 0.70 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-DK-AA6L-01 5 141382666 141382666 G T GNPDA1 Silent p.V252V 0.44 TCGA-DK-AA6L-01 5 169580 169580 G A PLEKHG4B Missense_Mutation p.R845Q 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA6L-01 5 176861046 176861046 C T GRK6 Silent p.F290F 0.44 TCGA-DK-AA6L-01 5 176943129 176943129 C G DDX41 Missense_Mutation p.E122Q 0.29 tolerated(0.66) probably_damaging(0.995) TCGA-DK-AA6L-01 5 31983271 31983271 G C PDZD2 Missense_Mutation p.E163Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6L-01 5 37358222 37358222 C T NUP155 Missense_Mutation p.E142K 0.17 deleterious(0) probably_damaging(0.923) TCGA-DK-AA6L-01 5 43492917 43492917 G C C5orf34 Missense_Mutation p.L464V 0.22 tolerated(0.6) possibly_damaging(0.471) TCGA-DK-AA6L-01 5 635596 635596 G C CEP72 Missense_Mutation p.K267N 0.13 tolerated(0.26) benign(0.28) TCGA-DK-AA6L-01 5 64267581 64267581 A G CWC27 Missense_Mutation p.Q365R 0.42 tolerated(0.34) benign(0.001) TCGA-DK-AA6L-01 5 75587088 75587088 G C SV2C Missense_Mutation p.E394Q 0.36 tolerated(0.1) probably_damaging(0.984) TCGA-DK-AA6L-01 5 77806001 77806001 G A LHFPL2 Silent p.L12L 0.33 TCGA-DK-AA6L-01 5 78076106 78076106 G C ARSB 3'UTR 0.44 TCGA-DK-AA6L-01 5 80641711 80641711 G C ACOT12 Missense_Mutation p.Q256E 0.24 tolerated(0.17) benign(0.192) TCGA-DK-AA6L-01 6 100898141 100898141 A T SIM1 Splice_Site p.X116_splice 0.27 TCGA-DK-AA6L-01 6 107827518 107827518 C G SOBP Nonsense_Mutation p.S103* 0.32 TCGA-DK-AA6L-01 6 129475753 129475753 C T LAMA2 Silent p.V377V 0.28 TCGA-DK-AA6L-01 6 160666508 160666508 G C SLC22A2 Missense_Mutation p.Q343E 0.20 deleterious(0.02) benign(0.393) TCGA-DK-AA6L-01 6 160666537 160666537 G C SLC22A2 Missense_Mutation p.P333R 0.24 deleterious(0) probably_damaging(0.989) TCGA-DK-AA6L-01 6 17765156 17765156 C A KIF13A Nonsense_Mutation p.E1535* 0.25 TCGA-DK-AA6L-01 6 27805674 27805674 G C HIST1H2AK 3'UTR 0.14 TCGA-DK-AA6L-01 6 28268964 28268964 C G PGBD1 Missense_Mutation p.Q445E 0.17 deleterious(0.03) probably_damaging(0.924) TCGA-DK-AA6L-01 6 30314535 30314535 C G TRIM39-RPP21 Nonsense_Mutation p.S399* 0.29 TCGA-DK-AA6L-01 6 31778309 31778309 C T HSPA1L Missense_Mutation p.D481N 0.56 deleterious_low_confidence(0.02) benign(0.122) TCGA-DK-AA6L-01 6 31937743 31937743 C A DXO Missense_Mutation p.D368Y 0.12 deleterious(0) possibly_damaging(0.86) TCGA-DK-AA6L-01 6 32260946 32260946 C G C6orf10 Missense_Mutation p.E502Q 0.22 tolerated(0.21) probably_damaging(0.986) TCGA-DK-AA6L-01 6 35438389 35438389 G A RPL10A Silent p.V172V 0.22 TCGA-DK-AA6L-01 6 35806520 35806520 G A SRPK1 Intron 0.19 TCGA-DK-AA6L-01 6 39512382 39512382 C G KIF6 Missense_Mutation p.E459Q 0.21 tolerated(0.14) benign(0.04) TCGA-DK-AA6L-01 6 99856117 99856117 C G PNISR Missense_Mutation p.W235S 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 7 100417338 100417338 C G EPHB4 Missense_Mutation p.D380H 0.23 tolerated(0.18) probably_damaging(0.925) TCGA-DK-AA6L-01 7 122341899 122341899 G A RNF148 Silent p.I302I 0.16 TCGA-DK-AA6L-01 7 122342073 122342073 G C RNF148 Silent p.L244L 0.13 TCGA-DK-AA6L-01 7 122634932 122634932 C G TAS2R16 Missense_Mutation p.D253H 0.17 tolerated(0.55) benign(0.04) TCGA-DK-AA6L-01 7 128607356 128607356 C T TNPO3 Missense_Mutation p.D897N 0.25 deleterious(0.01) benign(0.258) TCGA-DK-AA6L-01 7 137613106 137613106 A G CREB3L2 Missense_Mutation p.S37P 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-DK-AA6L-01 7 150554798 150554798 C A AOC1 Silent p.R414R 0.30 TCGA-DK-AA6L-01 7 151879094 151879094 C G KMT2C Missense_Mutation p.D1951H 0.21 probably_damaging(0.97) TCGA-DK-AA6L-01 7 154595663 154595663 G A DPP6 Silent p.K499K 0.19 TCGA-DK-AA6L-01 7 21675621 21675621 C G DNAH11 Missense_Mutation p.H1550D 0.15 probably_damaging(0.989) TCGA-DK-AA6L-01 7 2577855 2577855 C T BRAT1 Missense_Mutation p.V772M 0.19 tolerated(0.76) benign(0.062) TCGA-DK-AA6L-01 7 33020082 33020082 C G FKBP9 Missense_Mutation p.N270K 0.20 tolerated(0.8) benign(0.017) TCGA-DK-AA6L-01 7 48559672 48559672 C G ABCA13 Silent p.V4611V 0.15 TCGA-DK-AA6L-01 7 55241683 55241683 G A EGFR Missense_Mutation p.E711K 0.23 deleterious(0) benign(0.031) TCGA-DK-AA6L-01 7 5568942 5568942 G A ACTB Silent p.I71I 0.18 TCGA-DK-AA6L-01 7 6730542 6730542 G A ZNF12 Silent p.N677N 0.09 TCGA-DK-AA6L-01 7 72907212 72907212 G A BAZ1B Missense_Mutation p.S204L 0.10 deleterious_low_confidence(0.01) benign(0.256) TCGA-DK-AA6L-01 7 73101344 73101344 G A WBSCR22 Missense_Mutation p.R94Q 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6L-01 7 86794362 86794362 G C DMTF1 Missense_Mutation p.Q35H 0.24 deleterious_low_confidence(0.03) benign(0.004) TCGA-DK-AA6L-01 7 86824018 86824018 A G DMTF1 Missense_Mutation p.I683V 0.35 tolerated_low_confidence(0.2) benign(0.022) TCGA-DK-AA6L-01 7 94057038 94057038 C T COL1A2 Missense_Mutation p.R1123C 0.33 unknown(0) TCGA-DK-AA6L-01 7 95125301 95125301 G A ASB4 Missense_Mutation p.G140E 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 7 99367813 99367813 C T CYP3A4 Missense_Mutation p.E122K 0.09 tolerated(0.44) benign(0.017) TCGA-DK-AA6L-01 7 99453290 99453290 A T CYP3A43 Missense_Mutation p.L249F 0.17 tolerated(1) benign(0.02) TCGA-DK-AA6L-01 7 99758461 99758461 G C GAL3ST4 Missense_Mutation p.S184C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6L-01 7 99794875 99794875 A G STAG3 Silent p.K346K 0.12 TCGA-DK-AA6L-01 8 100729481 100729481 G A VPS13B Silent p.L2204L 0.17 TCGA-DK-AA6L-01 8 101084455 101084455 G A RGS22 Missense_Mutation p.L115F 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6L-01 8 104427646 104427646 C G DCAF13 Missense_Mutation p.S143W 0.23 deleterious_low_confidence(0) benign(0) TCGA-DK-AA6L-01 8 11995714 11995714 G A USP17L2 Missense_Mutation p.H186Y 0.24 tolerated(0.16) possibly_damaging(0.814) TCGA-DK-AA6L-01 8 121466103 121466103 G T MTBP Missense_Mutation p.A148S 0.44 deleterious(0) possibly_damaging(0.583) TCGA-DK-AA6L-01 8 121535597 121535597 G C MTBP 3'UTR 0.20 TCGA-DK-AA6L-01 8 131896934 131896934 G A ADCY8 Missense_Mutation p.S662F 0.22 deleterious(0) probably_damaging(0.958) TCGA-DK-AA6L-01 8 140630432 140630432 G A KCNK9 3'UTR 0.13 TCGA-DK-AA6L-01 8 143994808 143994808 C G CYP11B2 Missense_Mutation p.Q338H 0.17 tolerated(0.07) benign(0.208) TCGA-DK-AA6L-01 8 145651075 145651075 G A VPS28 Missense_Mutation p.S62F 0.25 deleterious(0) possibly_damaging(0.73) TCGA-DK-AA6L-01 8 61654746 61654746 C T CHD7 Missense_Mutation p.S252L 0.24 benign(0) TCGA-DK-AA6L-01 8 61736450 61736450 G C CHD7 Missense_Mutation p.E1085Q 0.16 probably_damaging(0.997) TCGA-DK-AA6L-01 8 66619462 66619462 G A MTFR1 Missense_Mutation p.M245I 0.23 tolerated(0.18) benign(0.042) TCGA-DK-AA6L-01 8 66701248 66701248 G C PDE7A Intron 0.28 TCGA-DK-AA6L-01 8 94713651 94713651 G C FAM92A1 Missense_Mutation p.E76Q 0.13 tolerated(0.11) possibly_damaging(0.474) TCGA-DK-AA6L-01 8 99170350 99170350 G A POP1 Missense_Mutation p.V976I 0.20 tolerated(0.19) benign(0.027) TCGA-DK-AA6L-01 9 101777831 101777831 G A COL15A1 Missense_Mutation p.E496K 0.39 tolerated_low_confidence(0.79) benign(0.016) TCGA-DK-AA6L-01 9 104432558 104432559 TT - GRIN3A Frame_Shift_Del p.K712Sfs*59 0.21 TCGA-DK-AA6L-01 9 126220081 126220081 G A DENND1A Silent p.L363L 0.33 TCGA-DK-AA6L-01 9 130270413 130270415 TGC - FAM129B In_Frame_Del p.S500del 0.18 TCGA-DK-AA6L-01 9 130425601 130425601 C T STXBP1 Silent p.L183L 0.69 TCGA-DK-AA6L-01 9 140069557 140069557 G A ANAPC2 Missense_Mutation p.S769L 0.58 deleterious(0.01) possibly_damaging(0.67) TCGA-DK-AA6L-01 9 140069732 140069732 G C ANAPC2 Missense_Mutation p.S738C 0.38 deleterious(0) possibly_damaging(0.882) TCGA-DK-AA6L-01 9 21007098 21007098 G A PTPLAD2 Missense_Mutation p.H213Y 0.23 tolerated(0.19) benign(0.007) TCGA-DK-AA6L-01 9 2110251 2110251 C T SMARCA2 Intron 0.19 TCGA-DK-AA6L-01 9 21206446 21206446 G A IFNA10 3'UTR 0.28 TCGA-DK-AA6L-01 9 32492516 32492516 C T DDX58 Missense_Mutation p.M148I 0.23 tolerated(0.31) benign(0.002) TCGA-DK-AA6L-01 9 37708479 37708479 C A FRMPD1 Silent p.R115R 0.37 TCGA-DK-AA6L-01 9 37744409 37744409 G C FRMPD1 Missense_Mutation p.E794Q 0.25 tolerated(0.08) benign(0.051) TCGA-DK-AA6L-01 9 5064917 5064917 C G JAK2 Missense_Mutation p.S364C 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6L-01 9 6434074 6434074 C T UHRF2 Missense_Mutation p.S182F 0.14 deleterious(0.01) possibly_damaging(0.802) TCGA-DK-AA6L-01 9 67968475 67968475 C T ANKRD20A1 Silent p.F678F 0.17 TCGA-DK-AA6L-01 9 79267412 79267412 C T PRUNE2 Silent p.E2848E 0.18 TCGA-DK-AA6L-01 9 84606563 84606563 A T SPATA31D1 Missense_Mutation p.H393L 0.71 deleterious(0.01) benign(0.283) TCGA-DK-AA6L-01 X 100509502 100509502 G A DRP2 Missense_Mutation p.R689Q 0.32 deleterious(0.04) probably_damaging(0.93) TCGA-DK-AA6L-01 X 101857568 101857568 G A ARMCX5 Missense_Mutation p.E167K 0.29 tolerated(0.08) possibly_damaging(0.612) TCGA-DK-AA6L-01 X 102564497 102564497 C T BEX2 3'UTR 0.66 TCGA-DK-AA6L-01 X 103080409 103080409 C T RAB9B Silent p.Q102Q 0.40 TCGA-DK-AA6L-01 X 118752632 118752632 G A SEPT6 3'UTR 0.43 TCGA-DK-AA6L-01 X 129055395 129055395 G A UTP14A Missense_Mutation p.E394K 0.35 tolerated(0.33) benign(0.12) TCGA-DK-AA6L-01 X 151935229 151935229 T A MAGEA3 Missense_Mutation p.E313V 0.67 deleterious(0) possibly_damaging(0.649) TCGA-DK-AA6L-01 X 153696318 153696318 C G PLXNA3 Missense_Mutation p.S1265C 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-DK-AA6L-01 X 83360854 83360854 C T RPS6KA6 Missense_Mutation p.E466K 0.29 deleterious(0.05) probably_damaging(0.971) TCGA-DK-AA6M-01 10 12259407 12259407 C T CDC123 Silent p.L127L 0.11 TCGA-DK-AA6M-01 11 111430979 111430979 C T LAYN Silent p.F315F 0.25 TCGA-DK-AA6M-01 11 379931 379931 G A B4GALNT4 Missense_Mutation p.G852R 0.23 tolerated(0.1) unknown(0) TCGA-DK-AA6M-01 11 64939754 64939754 C T SPDYC Missense_Mutation p.A99V 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-DK-AA6M-01 11 85779777 85779778 TG - PICALM Frame_Shift_Del p.H15Qfs*36 0.39 TCGA-DK-AA6M-01 12 123285716 123285716 C T CCDC62 Silent p.V341V 0.35 TCGA-DK-AA6M-01 12 13529288 13529288 G T C12orf36 Missense_Mutation p.P18T 0.21 benign(0.004) TCGA-DK-AA6M-01 12 49421858 49421858 C T KMT2D Missense_Mutation p.V4817M 0.23 unknown(0) TCGA-DK-AA6M-01 12 49582801 49582801 G A TUBA1A 5'UTR 0.30 TCGA-DK-AA6M-01 13 39263225 39263225 C T FREM2 Missense_Mutation p.L582F 0.44 tolerated(1) benign(0) TCGA-DK-AA6M-01 13 48953757 48953759 TAC - RB1 In_Frame_Del p.Y454del 0.60 TCGA-DK-AA6M-01 13 70681415 70681415 G A KLHL1 Silent p.H139H 0.31 TCGA-DK-AA6M-01 14 104493042 104493042 G A TDRD9 Missense_Mutation p.M1016I 0.18 tolerated(0.31) benign(0.049) TCGA-DK-AA6M-01 14 105518013 105518013 C T GPR132 Missense_Mutation p.R154H 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6M-01 14 21238700 21238700 G A EDDM3B Missense_Mutation p.G131R 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA6M-01 14 91772199 91772199 G T CCDC88C Silent p.T1089T 0.05 TCGA-DK-AA6M-01 14 95562699 95562699 C G DICER1 Missense_Mutation p.E1520Q 0.17 tolerated(0.12) probably_damaging(0.999) TCGA-DK-AA6M-01 14 96777896 96777896 C G ATG2B Missense_Mutation p.D1325H 0.31 deleterious(0.03) benign(0.283) TCGA-DK-AA6M-01 15 42602994 42602994 T C GANC Missense_Mutation p.L336P 0.12 probably_damaging(1) TCGA-DK-AA6M-01 15 72040761 72040761 G T THSD4 Missense_Mutation p.C748F 0.19 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6M-01 16 51175306 51175306 C T SALL1 Missense_Mutation p.R276Q 0.28 tolerated(0.6) benign(0.229) TCGA-DK-AA6M-01 16 67645084 67645084 C T CTCF Nonsense_Mutation p.Q117* 0.34 TCGA-DK-AA6M-01 16 69148523 69148523 G A HAS3 Missense_Mutation p.C339Y 0.19 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6M-01 17 13399556 13399556 C G HS3ST3A1 Missense_Mutation p.K393N 0.27 deleterious(0.01) benign(0.334) TCGA-DK-AA6M-01 17 26732177 26732177 G A SLC46A1 Missense_Mutation p.R180W 0.38 deleterious(0) probably_damaging(1) TCGA-DK-AA6M-01 17 27248813 27248813 C T PHF12 Silent p.R243R 0.29 TCGA-DK-AA6M-01 17 38172833 38172833 G A CSF3 Silent p.L136L 0.14 TCGA-DK-AA6M-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.58 deleterious(0) probably_damaging(1) TCGA-DK-AA6M-01 19 19740837 19740837 C T GMIP Missense_Mutation p.E950K 0.38 tolerated_low_confidence(0.12) benign(0.018) TCGA-DK-AA6M-01 19 45490649 45490649 G A CLPTM1 Missense_Mutation p.E336K 0.24 deleterious(0.03) possibly_damaging(0.781) TCGA-DK-AA6M-01 1 144598686 144598686 C A RP11-640M9.2 RNA 0.16 TCGA-DK-AA6M-01 1 158624456 158624456 C A SPTA1 Missense_Mutation p.R994L 0.29 deleterious(0.01) benign(0.058) TCGA-DK-AA6M-01 1 16266019 16266019 G A SPEN 3'UTR 0.37 TCGA-DK-AA6M-01 1 19633512 19633512 C T AKR7A2 Missense_Mutation p.E258K 0.30 tolerated(0.57) benign(0.014) TCGA-DK-AA6M-01 1 240255869 240255869 G T FMN2 Missense_Mutation p.V154F 0.20 unknown(0) TCGA-DK-AA6M-01 1 40029543 40029543 G A PABPC4 Missense_Mutation p.A502V 0.20 tolerated(0.19) benign(0.001) TCGA-DK-AA6M-01 1 43220537 43220537 C A LEPRE1 Intron 0.34 TCGA-DK-AA6M-01 1 70504819 70504819 C T LRRC7 Silent p.I1066I 0.38 TCGA-DK-AA6M-01 1 79385933 79385933 G T ELTD1 Missense_Mutation p.L466I 0.36 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6M-01 1 900517 900517 C T KLHL17 Silent p.L625L 0.14 TCGA-DK-AA6M-01 1 94997899 94997899 G T F3 Silent p.G243G 0.21 TCGA-DK-AA6M-01 20 34025553 34025553 G A GDF5 Silent p.P52P 0.39 TCGA-DK-AA6M-01 20 44439565 44439565 C A DNTTIP1 Silent p.A279A 0.42 TCGA-DK-AA6M-01 20 49191065 49191065 A G PTPN1 Silent p.A122A 0.07 TCGA-DK-AA6M-01 20 57768661 57768661 G A ZNF831 Missense_Mutation p.G863R 0.82 tolerated(0.7) benign(0.116) TCGA-DK-AA6M-01 22 24177024 24177024 G A DERL3 Missense_Mutation p.A237V 0.17 tolerated_low_confidence(0.18) benign(0.014) TCGA-DK-AA6M-01 22 30051646 30051646 G T NF2 Nonsense_Mutation p.E194* 0.33 TCGA-DK-AA6M-01 22 36708231 36708231 C A MYH9 Nonsense_Mutation p.E531* 0.42 TCGA-DK-AA6M-01 22 41568639 41568639 A - EP300 Frame_Shift_Del p.E1530Gfs*11 0.29 TCGA-DK-AA6M-01 2 169995846 169995846 C T LRP2 Missense_Mutation p.V4435I 0.23 benign(0.001) TCGA-DK-AA6M-01 2 170034345 170034345 A G LRP2 Missense_Mutation p.I3454T 0.26 probably_damaging(0.928) TCGA-DK-AA6M-01 2 231035453 231035453 G A SP110 Nonsense_Mutation p.Q638* 0.18 TCGA-DK-AA6M-01 2 240985485 240985485 C A OR6B3 Missense_Mutation p.S2I 0.35 tolerated(0.17) benign(0.027) TCGA-DK-AA6M-01 2 27430403 27430403 G C SLC5A6 Missense_Mutation p.S39C 0.19 deleterious(0.03) probably_damaging(0.958) TCGA-DK-AA6M-01 3 121416400 121416400 C T GOLGB1 Silent p.K990K 0.28 TCGA-DK-AA6M-01 3 51990280 51990280 G A GPR62 Silent p.L204L 0.25 TCGA-DK-AA6M-01 3 53796063 53796063 C T CACNA1D Silent p.L1295L 0.24 TCGA-DK-AA6M-01 4 147561758 147561758 C T POU4F2 Missense_Mutation p.A343V 0.31 deleterious(0.01) benign(0.105) TCGA-DK-AA6M-01 4 149075869 149075869 G A NR3C2 Missense_Mutation p.A733V 0.20 tolerated(0.5) benign(0.134) TCGA-DK-AA6M-01 4 46994901 46994901 C T GABRA4 Missense_Mutation p.R50H 0.33 deleterious(0.05) benign(0.077) TCGA-DK-AA6M-01 4 81256999 81256999 C A C4orf22 Nonsense_Mutation p.S26* 0.23 TCGA-DK-AA6M-01 4 83776081 83776081 C T SEC31A Silent p.K661K 0.24 TCGA-DK-AA6M-01 5 140595315 140595315 G A PCDHB13 Silent p.A540A 0.30 TCGA-DK-AA6M-01 5 140604418 140604418 C T PCDHB14 Silent p.N447N 0.27 TCGA-DK-AA6M-01 5 225666 225666 G A SDHA Missense_Mutation p.A149T 0.12 tolerated_low_confidence(0.12) benign(0.084) TCGA-DK-AA6M-01 5 43245777 43245777 G A NIM1K 5'UTR 0.23 TCGA-DK-AA6M-01 5 7766897 7766897 C T ADCY2 Missense_Mutation p.A731V 0.11 tolerated(0.34) benign(0.002) TCGA-DK-AA6M-01 6 26107749 26107749 T C HIST1H1T Silent p.K191K 0.34 TCGA-DK-AA6M-01 6 76022886 76022886 G A FILIP1 Missense_Mutation p.P888S 0.29 tolerated(0.64) benign(0.001) TCGA-DK-AA6M-01 6 82901567 82901567 C T IBTK Missense_Mutation p.R1123K 0.28 deleterious(0.03) probably_damaging(0.952) TCGA-DK-AA6M-01 7 135095290 135095290 C A CNOT4 Missense_Mutation p.V266L 0.27 tolerated(0.61) benign(0.014) TCGA-DK-AA6M-01 7 135421945 135421945 C A FAM180A Missense_Mutation p.V27L 0.37 tolerated(0.14) benign(0.009) TCGA-DK-AA6M-01 7 148484180 148484180 G A CUL1 Missense_Mutation p.D483N 0.21 deleterious(0.02) benign(0.292) TCGA-DK-AA6M-01 7 150715787 150715787 G A ATG9B Silent p.T546T 0.25 TCGA-DK-AA6M-01 7 23353159 23353159 A G IGF2BP3 Silent p.I503I 0.10 TCGA-DK-AA6M-01 7 70231198 70231198 G A AUTS2 Missense_Mutation p.E523K 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA6M-01 7 81598264 81598264 C T CACNA2D1 Silent p.S778S 0.22 TCGA-DK-AA6M-01 8 23159605 23159605 G A LOXL2 Missense_Mutation p.R690C 0.56 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6M-01 8 53853322 53853322 C T NPBWR1 Silent p.V285V 0.10 TCGA-DK-AA6M-01 8 72964950 72964950 C T TRPA1 Silent p.A565A 0.16 TCGA-DK-AA6M-01 9 130513464 130513464 C T SH2D3C Missense_Mutation p.R224H 0.36 tolerated(0.16) probably_damaging(0.971) TCGA-DK-AA6M-01 9 140997237 140997237 G A CACNA1B Missense_Mutation p.C1766Y 0.35 deleterious(0) probably_damaging(0.984) TCGA-DK-AA6M-01 9 99521603 99521603 G A ZNF510 Silent p.L503L 0.23 TCGA-DK-AA6M-01 X 119007290 119007290 G A NDUFA1 Silent p.G42G 0.26 TCGA-DK-AA6M-01 X 119760835 119760835 G T C1GALT1C1 Missense_Mutation p.L63I 0.39 tolerated(0.06) benign(0.206) TCGA-DK-AA6M-01 X 12906195 12906195 G A TLR7 Missense_Mutation p.M856I 0.36 tolerated(0.72) benign(0) TCGA-DK-AA6M-01 X 17166941 17166941 C G REPS2 3'UTR 0.29 TCGA-DK-AA6M-01 X 22051148 22051148 G A PHEX Missense_Mutation p.V9M 0.27 tolerated(0.39) benign(0) TCGA-DK-AA6M-01 X 32360315 32360315 C T DMD Missense_Mutation p.A1942T 0.35 possibly_damaging(0.695) TCGA-DK-AA6M-01 X 49062081 49062081 C T CACNA1F Missense_Mutation p.E1900K 0.44 deleterious(0) benign(0.014) TCGA-DK-AA6M-01 X 50111995 50111995 G A DGKK RNA 0.21 TCGA-DK-AA6M-01 X 85403941 85403941 T A DACH2 Nonsense_Mutation p.L106* 0.24 TCGA-DK-AA6M-01 X 96185757 96185757 C A DIAPH2 Missense_Mutation p.A335D 0.13 deleterious(0) unknown(0) TCGA-DK-AA6P-01 10 124922403 124922403 T G BUB3 Intron 0.73 TCGA-DK-AA6P-01 10 17088054 17088054 G A CUBN Silent p.F1123F 0.50 TCGA-DK-AA6P-01 10 26463372 26463372 G T MYO3A Missense_Mutation p.L1393F 0.12 deleterious_low_confidence(0.05) benign(0.243) TCGA-DK-AA6P-01 10 79595678 79595678 G A DLG5 Silent p.I480I 0.07 TCGA-DK-AA6P-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.86 TCGA-DK-AA6P-01 11 124412755 124412755 G T OR8B12 Missense_Mutation p.P266T 0.93 deleterious_low_confidence(0.04) possibly_damaging(0.864) TCGA-DK-AA6P-01 11 133799572 133799572 G A IGSF9B Missense_Mutation p.S542L 0.31 deleterious(0) possibly_damaging(0.625) TCGA-DK-AA6P-01 11 46563514 46563514 C G AMBRA1 Missense_Mutation p.E595Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-DK-AA6P-01 11 46722508 46722508 G T ZNF408 5'UTR 0.16 TCGA-DK-AA6P-01 11 46724276 46724276 G A ZNF408 Missense_Mutation p.G118E 0.10 tolerated(0.44) benign(0.255) TCGA-DK-AA6P-01 11 55860941 55860941 C G OR8I2 Missense_Mutation p.S53C 0.07 tolerated(0.09) possibly_damaging(0.579) TCGA-DK-AA6P-01 11 66191328 66191328 C T NPAS4 Missense_Mutation p.R323C 0.08 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6P-01 11 66192010 66192010 C T NPAS4 Missense_Mutation p.P550L 0.42 tolerated(0.09) probably_damaging(0.998) TCGA-DK-AA6P-01 11 85435687 85435687 G C SYTL2 Missense_Mutation p.L605V 0.28 deleterious(0) possibly_damaging(0.535) TCGA-DK-AA6P-01 11 94924617 94924617 C A SESN3 Missense_Mutation p.R98L 0.81 deleterious(0.02) probably_damaging(0.935) TCGA-DK-AA6P-01 11 984716 984716 C T AP2A2 Silent p.V259V 0.21 TCGA-DK-AA6P-01 12 110819630 110819630 G A ANAPC7 Silent p.G387G 0.14 TCGA-DK-AA6P-01 12 112512526 112512526 G C NAA25 Silent p.V273V 0.04 TCGA-DK-AA6P-01 12 116445261 116445261 C T MED13L Silent p.K731K 0.07 TCGA-DK-AA6P-01 12 121009011 121009011 C G RNF10 Missense_Mutation p.L687V 0.07 tolerated(0.63) benign(0.002) TCGA-DK-AA6P-01 12 122757407 122757407 C G CLIP1 3'UTR 0.11 TCGA-DK-AA6P-01 12 122958142 122958142 C G ZCCHC8 Missense_Mutation p.E676Q 0.04 deleterious(0.03) probably_damaging(0.947) TCGA-DK-AA6P-01 12 12334014 12334014 C G LRP6 Missense_Mutation p.E446Q 0.79 tolerated(0.11) possibly_damaging(0.471) TCGA-DK-AA6P-01 12 12940379 12940379 C G APOLD1 Missense_Mutation p.I211M 0.07 deleterious(0) benign(0.391) TCGA-DK-AA6P-01 12 15654820 15654820 G A PTPRO Missense_Mutation p.E310K 0.34 tolerated_low_confidence(0.1) benign(0.002) TCGA-DK-AA6P-01 12 23757351 23757351 C T SOX5 Silent p.K378K 0.05 TCGA-DK-AA6P-01 12 278267 278267 G A IQSEC3 Silent p.P1020P 0.13 TCGA-DK-AA6P-01 12 29592285 29592285 G A OVCH1 Silent p.I1080I 0.09 TCGA-DK-AA6P-01 12 3048515 3048515 G A TULP3 Missense_Mutation p.D412N 0.14 tolerated(0.06) possibly_damaging(0.773) TCGA-DK-AA6P-01 12 34175643 34175643 G A ALG10 Missense_Mutation p.D37N 0.16 deleterious(0.04) probably_damaging(0.954) TCGA-DK-AA6P-01 12 46760937 46760937 C A SLC38A2 Nonsense_Mutation p.E135* 0.12 TCGA-DK-AA6P-01 12 51065098 51065098 C T DIP2B Missense_Mutation p.S186L 0.64 deleterious(0.04) possibly_damaging(0.489) TCGA-DK-AA6P-01 12 56490899 56490899 C G ERBB3 Missense_Mutation p.S782C 0.79 tolerated(0.06) benign(0.034) TCGA-DK-AA6P-01 12 56510446 56510446 G A RPL41 5'UTR 0.68 TCGA-DK-AA6P-01 12 56510498 56510498 G A RPL41 5'UTR 0.68 TCGA-DK-AA6P-01 12 56510574 56510574 G C RPL41 Translation_Start_Site p.M1? 0.48 unknown(0) TCGA-DK-AA6P-01 12 57110111 57110111 G C NACA Intron 0.06 TCGA-DK-AA6P-01 12 57110801 57110801 G C NACA Intron 0.10 TCGA-DK-AA6P-01 12 57974944 57974944 C A KIF5A Missense_Mutation p.S915Y 0.19 deleterious(0.01) benign(0.259) TCGA-DK-AA6P-01 12 66786236 66786236 C T GRIP1 Silent p.L720L 0.87 TCGA-DK-AA6P-01 12 68052601 68052601 C G DYRK2 3'UTR 0.29 TCGA-DK-AA6P-01 12 78400913 78400913 C A NAV3 Missense_Mutation p.S532Y 0.19 deleterious(0.04) probably_damaging(0.958) TCGA-DK-AA6P-01 13 29252262 29252262 G A POMP 3'UTR 0.05 TCGA-DK-AA6P-01 13 36776163 36776163 A T SOHLH2 Missense_Mutation p.L116Q 0.05 deleterious(0.03) possibly_damaging(0.483) TCGA-DK-AA6P-01 13 38171360 38171360 C T POSTN Missense_Mutation p.C60Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6P-01 13 76374861 76374861 C A LMO7 5'UTR 0.08 TCGA-DK-AA6P-01 14 100126644 100126644 C T HHIPL1 Missense_Mutation p.P468L 0.12 deleterious(0) probably_damaging(0.97) TCGA-DK-AA6P-01 14 100405590 100405590 G A EML1 Missense_Mutation p.E769K 0.30 deleterious(0.03) benign(0.004) TCGA-DK-AA6P-01 14 106174189 106174189 C G IGHA1 Missense_Mutation p.K200N 0.12 tolerated(0.06) benign(0.086) TCGA-DK-AA6P-01 14 20502085 20502085 A - OR4K13 Frame_Shift_Del p.F278Sfs*5 0.48 TCGA-DK-AA6P-01 14 20837594 20837594 G C TEP1 Missense_Mutation p.S2522C 0.24 tolerated_low_confidence(0.18) benign(0.007) TCGA-DK-AA6P-01 14 69256748 69256748 G T ZFP36L1 Nonsense_Mutation p.C173* 0.92 TCGA-DK-AA6P-01 14 69727147 69727147 C G GALNT16 Missense_Mutation p.S47W 0.79 deleterious(0.04) benign(0.24) TCGA-DK-AA6P-01 14 69727153 69727153 A T GALNT16 Missense_Mutation p.Q49L 0.82 tolerated(0.3) benign(0) TCGA-DK-AA6P-01 14 73980889 73980889 G C HEATR4 Silent p.P420P 0.17 TCGA-DK-AA6P-01 14 75551173 75551173 G T NEK9 3'UTR 0.93 TCGA-DK-AA6P-01 14 91366471 91366471 C T RPS6KA5 Missense_Mutation p.V454I 0.37 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6P-01 15 101717593 101717593 T G CHSY1 Nonstop_Mutation p.*803Yext*13 0.06 TCGA-DK-AA6P-01 15 41624617 41624617 G A OIP5 Missense_Mutation p.S48L 0.50 tolerated(0.08) probably_damaging(0.969) TCGA-DK-AA6P-01 15 45386800 45386800 G A DUOX2 Silent p.F1495F 0.26 TCGA-DK-AA6P-01 15 48634228 48634228 G A DUT Missense_Mutation p.D238N 0.11 tolerated(0.07) benign(0.038) TCGA-DK-AA6P-01 15 55489098 55489098 G A RSL24D1 5'UTR 0.17 TCGA-DK-AA6P-01 16 1822222 1822222 C T MRPS34 Silent p.%3D 0.38 TCGA-DK-AA6P-01 16 18849689 18849689 G T SMG1 Nonsense_Mutation p.S2395* 0.11 TCGA-DK-AA6P-01 16 2156483 2156483 G A PKD1 Missense_Mutation p.R2469C 0.25 possibly_damaging(0.901) TCGA-DK-AA6P-01 16 30750186 30750186 C T SRCAP Missense_Mutation p.P2942L 0.16 unknown(0) TCGA-DK-AA6P-01 16 4714766 4714767 - GAAGGA MGRN1 In_Frame_Ins p.E207_G208dup 0.35 TCGA-DK-AA6P-01 16 47549430 47549430 A T PHKB Splice_Site p.X172_splice 0.17 TCGA-DK-AA6P-01 16 48596026 48596026 C T N4BP1 Silent p.L176L 0.18 TCGA-DK-AA6P-01 16 61854890 61854890 T A CDH8 Silent p.T321T 0.09 TCGA-DK-AA6P-01 16 67697324 67697324 C G ENKD1 Missense_Mutation p.Q293H 0.33 deleterious(0.01) possibly_damaging(0.739) TCGA-DK-AA6P-01 16 67984324 67984324 G A SLC12A4 Silent p.I511I 0.14 TCGA-DK-AA6P-01 16 77387776 77387776 G A ADAMTS18 Nonsense_Mutation p.Q490* 0.05 TCGA-DK-AA6P-01 16 88721789 88721789 C G MVD Missense_Mutation p.E239Q 0.60 tolerated(0.38) benign(0.003) TCGA-DK-AA6P-01 16 89813088 89813088 C T FANCA Silent p.L1139L 0.20 TCGA-DK-AA6P-01 17 15961853 15961853 G A NCOR1 Missense_Mutation p.S1981L 0.07 probably_damaging(0.989) TCGA-DK-AA6P-01 17 29679318 29679318 G T NF1 Nonsense_Mutation p.E2501* 0.13 TCGA-DK-AA6P-01 17 34856954 34856954 G A MYO19 Silent p.A734A 0.03 TCGA-DK-AA6P-01 17 35536319 35536319 G C ACACA Missense_Mutation p.S1654C 0.08 tolerated(0.06) benign(0.383) TCGA-DK-AA6P-01 17 36002258 36002258 G A DDX52 Missense_Mutation p.P56L 0.13 deleterious(0.05) benign(0.003) TCGA-DK-AA6P-01 17 39673157 39673157 C T KRT15 Missense_Mutation p.R214Q 0.11 deleterious(0) probably_damaging(0.958) TCGA-DK-AA6P-01 17 42635417 42635417 T G FZD2 Missense_Mutation p.C121G 0.32 deleterious(0) probably_damaging(1) TCGA-DK-AA6P-01 17 44110827 44110827 C A KANSL1 Splice_Site p.X889_splice 0.50 TCGA-DK-AA6P-01 17 4442163 4442163 G A SPNS2 3'UTR 0.26 TCGA-DK-AA6P-01 17 46607085 46607085 C T HOXB1 Missense_Mutation p.E244K 0.09 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6P-01 17 47482504 47482504 C T PHB Silent p.L223L 0.10 TCGA-DK-AA6P-01 17 4872922 4872922 C T CAMTA2 Intron 0.11 TCGA-DK-AA6P-01 17 5042417 5042417 G A USP6 Intron 0.23 TCGA-DK-AA6P-01 17 61995822 61995822 G A GH1 Missense_Mutation p.P19S 0.45 tolerated(0.14) benign(0.314) TCGA-DK-AA6P-01 17 62892223 62892223 G A LRRC37A3 Nonsense_Mutation p.Q385* 0.51 TCGA-DK-AA6P-01 17 64225468 64225468 C T APOH Silent p.S10S 0.11 TCGA-DK-AA6P-01 17 7405419 7405419 G T POLR2A Silent p.T850T 0.26 TCGA-DK-AA6P-01 17 74056415 74056415 C T SRP68 Missense_Mutation p.E271K 0.11 tolerated(0.4) benign(0.086) TCGA-DK-AA6P-01 17 7604997 7604997 C T WRAP53 Missense_Mutation p.S282L 0.09 deleterious(0) probably_damaging(0.964) TCGA-DK-AA6P-01 17 8158359 8158359 C A PFAS Missense_Mutation p.T98N 0.23 deleterious(0) possibly_damaging(0.847) TCGA-DK-AA6P-01 18 13049120 13049120 A G CEP192 Missense_Mutation p.N777S 0.24 tolerated(0.79) benign(0.023) TCGA-DK-AA6P-01 18 52556530 52556530 C T RAB27B Silent p.I181I 0.84 TCGA-DK-AA6P-01 18 6244536 6244536 C G L3MBTL4 Missense_Mutation p.E91Q 0.16 deleterious(0) probably_damaging(0.967) TCGA-DK-AA6P-01 18 9595085 9595085 G C PPP4R1 Nonsense_Mutation p.S40* 0.29 TCGA-DK-AA6P-01 19 11943708 11943708 G C ZNF440 Missense_Mutation p.V573L 0.12 tolerated(0.53) benign(0.01) TCGA-DK-AA6P-01 19 14591129 14591129 G T GIPC1 Missense_Mutation p.R215S 0.18 deleterious(0.04) benign(0.32) TCGA-DK-AA6P-01 19 15278173 15278173 C T NOTCH3 Nonsense_Mutation p.W1750* 0.18 TCGA-DK-AA6P-01 19 19744922 19744922 G A GMIP Missense_Mutation p.P721L 0.09 tolerated(0.09) benign(0.44) TCGA-DK-AA6P-01 19 19822821 19822821 T C ZNF14 Silent p.Q423Q 0.55 TCGA-DK-AA6P-01 19 22375856 22375856 C T ZNF676 Nonsense_Mutation p.W31* 0.07 TCGA-DK-AA6P-01 19 22574677 22574677 T C ZNF98 Missense_Mutation p.I454V 0.06 tolerated(0.12) benign(0.001) TCGA-DK-AA6P-01 19 22847025 22847025 C G ZNF492 Missense_Mutation p.S185C 0.29 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6P-01 19 22847181 22847181 C G ZNF492 Missense_Mutation p.S237C 0.25 deleterious(0.04) possibly_damaging(0.88) TCGA-DK-AA6P-01 19 22847623 22847623 G C ZNF492 Missense_Mutation p.K384N 0.07 deleterious(0.01) probably_damaging(0.937) TCGA-DK-AA6P-01 19 35250196 35250196 C G ZNF599 Missense_Mutation p.E504Q 0.05 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6P-01 19 37441616 37441616 G A ZNF568 Missense_Mutation p.E521K 0.08 tolerated(0.06) benign(0.209) TCGA-DK-AA6P-01 19 375875 375875 G A THEG Silent p.L32L 0.07 TCGA-DK-AA6P-01 19 37916821 37916821 C A ZNF569 Nonsense_Mutation p.E63* 0.09 TCGA-DK-AA6P-01 19 41066379 41066379 G A SPTBN4 Intron 0.19 TCGA-DK-AA6P-01 19 42566715 42566715 C A GRIK5 Missense_Mutation p.V145F 0.15 tolerated(0.07) possibly_damaging(0.612) TCGA-DK-AA6P-01 19 45411811 45411811 G A APOE Missense_Mutation p.M86I 0.18 deleterious(0.01) possibly_damaging(0.553) TCGA-DK-AA6P-01 19 52659200 52659200 T C ZNF836 Missense_Mutation p.E579G 0.51 deleterious(0.04) probably_damaging(0.979) TCGA-DK-AA6P-01 19 52659242 52659242 T G ZNF836 Missense_Mutation p.Y565S 0.43 tolerated(0.42) probably_damaging(0.996) TCGA-DK-AA6P-01 19 54376942 54376942 G A MYADM Silent p.L53L 0.26 TCGA-DK-AA6P-01 19 57088575 57088575 G A ZNF470 Missense_Mutation p.E260K 0.09 tolerated(0.14) benign(0.147) TCGA-DK-AA6P-01 19 57327081 57327081 C T PEG3 Missense_Mutation p.G910E 0.08 tolerated(0.27) benign(0.391) TCGA-DK-AA6P-01 19 8808423 8808423 T C ACTL9 Missense_Mutation p.Q210R 0.13 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6P-01 1 120497779 120497779 C T NOTCH2 Silent p.V701V 0.14 TCGA-DK-AA6P-01 1 146397433 146397433 G A NBPF12 Missense_Mutation p.E84K 0.04 possibly_damaging(0.497) TCGA-DK-AA6P-01 1 155161899 155161899 G A MUC1 Silent p.V78V 0.24 TCGA-DK-AA6P-01 1 155348324 155348324 C T ASH1L Missense_Mutation p.D2065N 0.11 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-DK-AA6P-01 1 15546238 15546238 G A TMEM51 Silent p.%3D 0.09 TCGA-DK-AA6P-01 1 158324229 158324229 C A CD1E Missense_Mutation p.Q41K 0.07 deleterious(0.01) possibly_damaging(0.464) TCGA-DK-AA6P-01 1 161022239 161022239 C T ARHGAP30 Missense_Mutation p.E311K 0.05 tolerated(0.06) benign(0.253) TCGA-DK-AA6P-01 1 161022267 161022267 C T ARHGAP30 Silent p.E301E 0.05 TCGA-DK-AA6P-01 1 161022269 161022269 C T ARHGAP30 Missense_Mutation p.E301K 0.05 deleterious(0.02) benign(0.109) TCGA-DK-AA6P-01 1 171605682 171605682 C G MYOC Missense_Mutation p.E300Q 0.12 tolerated(0.22) benign(0.34) TCGA-DK-AA6P-01 1 173506089 173506089 G C SLC9C2 Missense_Mutation p.I549M 0.11 deleterious(0.03) possibly_damaging(0.453) TCGA-DK-AA6P-01 1 186123062 186123062 G A HMCN1 Missense_Mutation p.D5067N 0.14 probably_damaging(0.971) TCGA-DK-AA6P-01 1 207014375 207014375 G A IL19 Silent p.R168R 0.63 TCGA-DK-AA6P-01 1 207087209 207087209 C G FAIM3 Missense_Mutation p.E90Q 0.16 tolerated(0.05) benign(0.351) TCGA-DK-AA6P-01 1 21154121 21154121 A G EIF4G3 Missense_Mutation p.C1370R 0.61 deleterious(0) probably_damaging(1) TCGA-DK-AA6P-01 1 230979603 230979603 C T C1orf198 Missense_Mutation p.E142K 0.16 deleterious(0.02) possibly_damaging(0.886) TCGA-DK-AA6P-01 1 236761247 236761247 C T HEATR1 Silent p.L178L 0.06 TCGA-DK-AA6P-01 1 237947660 237947660 G A RYR2 Silent p.A4216A 0.11 TCGA-DK-AA6P-01 1 27101517 27101517 C T ARID1A Missense_Mutation p.S1600F 0.44 unknown(0) TCGA-DK-AA6P-01 1 32050937 32050937 C G TINAGL1 Missense_Mutation p.S348C 0.13 deleterious(0) probably_damaging(0.918) TCGA-DK-AA6P-01 1 32573701 32573701 C T KPNA6 5'UTR 0.08 TCGA-DK-AA6P-01 1 32676909 32676909 G A DCDC2B Silent p.K101K 0.50 TCGA-DK-AA6P-01 1 32828315 32828315 C A TSSK3 Missense_Mutation p.L5M 0.14 deleterious(0) probably_damaging(0.99) TCGA-DK-AA6P-01 1 36859525 36859525 A G LSM10 Missense_Mutation p.L69P 0.12 deleterious(0) probably_damaging(0.974) TCGA-DK-AA6P-01 1 37346235 37346235 C T GRIK3 Missense_Mutation p.G184R 0.09 deleterious(0) possibly_damaging(0.756) TCGA-DK-AA6P-01 1 43213068 43213068 G A LEPRE1 Nonsense_Mutation p.Q644* 0.56 TCGA-DK-AA6P-01 1 45479660 45479660 C T UROD Missense_Mutation p.P185L 0.11 deleterious(0) probably_damaging(1) TCGA-DK-AA6P-01 1 48701424 48701424 G A SLC5A9 Missense_Mutation p.V414M 0.07 deleterious(0) probably_damaging(0.988) TCGA-DK-AA6P-01 20 30729605 30729618 GCTCTACTCCAACC - TM9SF4 Frame_Shift_Del p.L146Rfs*4 0.12 TCGA-DK-AA6P-01 20 30789894 30789894 G A PLAGL2 Missense_Mutation p.R30W 0.10 deleterious(0) possibly_damaging(0.646) TCGA-DK-AA6P-01 20 31292698 31292698 C G COMMD7 Missense_Mutation p.Q115H 0.07 tolerated(0.11) possibly_damaging(0.726) TCGA-DK-AA6P-01 20 32207403 32207403 A G CBFA2T2 Silent p.P176P 0.40 TCGA-DK-AA6P-01 20 60868959 60868959 T C OSBPL2 3'UTR 0.11 TCGA-DK-AA6P-01 20 62598084 62598084 T C ZNF512B Silent p.A148A 0.34 TCGA-DK-AA6P-01 21 31654987 31654987 C A KRTAP24-1 Silent p.P88P 0.26 TCGA-DK-AA6P-01 21 41648054 41648054 C T DSCAM Missense_Mutation p.V776I 0.17 tolerated(1) benign(0.006) TCGA-DK-AA6P-01 21 42779976 42779976 G A MX2 Missense_Mutation p.R655Q 0.09 tolerated(1) benign(0.002) TCGA-DK-AA6P-01 22 29130581 29130582 GG - CHEK2 Frame_Shift_Del p.T43Kfs*33 0.49 TCGA-DK-AA6P-01 22 32813116 32813116 A C BPIFC Missense_Mutation p.I427S 0.05 deleterious(0) probably_damaging(0.958) TCGA-DK-AA6P-01 22 37272086 37272086 G C NCF4 Missense_Mutation p.R340T 0.21 deleterious_low_confidence(0) benign(0.227) TCGA-DK-AA6P-01 22 42269859 42269859 G C SREBF2 Missense_Mutation p.E309Q 0.50 deleterious(0.01) benign(0.224) TCGA-DK-AA6P-01 22 46136262 46136262 G C ATXN10 Silent p.V339V 0.10 TCGA-DK-AA6P-01 22 50216991 50216991 C T BRD1 Silent p.L325L 0.38 TCGA-DK-AA6P-01 2 113012514 113012514 G C ZC3H8 Silent p.L15L 0.21 TCGA-DK-AA6P-01 2 15307238 15307238 C T NBAS Silent p.V2350V 0.26 TCGA-DK-AA6P-01 2 160804023 160804023 G T PLA2R1 Missense_Mutation p.P1253T 0.09 tolerated(0.05) possibly_damaging(0.607) TCGA-DK-AA6P-01 2 198281515 198281515 G C SF3B1 Missense_Mutation p.Q206E 0.05 tolerated(1) benign(0.001) TCGA-DK-AA6P-01 2 209045506 209045506 T C C2orf80 Missense_Mutation p.Y110C 0.36 deleterious(0) probably_damaging(1) TCGA-DK-AA6P-01 2 219559281 219559281 C G STK36 Missense_Mutation p.Q812E 0.20 deleterious(0.03) benign(0.103) TCGA-DK-AA6P-01 2 227896872 227896872 C T COL4A4 Missense_Mutation p.G1233E 0.14 unknown(0) TCGA-DK-AA6P-01 2 235404434 235404434 A T ARL4C 3'UTR 0.59 TCGA-DK-AA6P-01 2 24305783 24305783 G A TP53I3 Silent p.L126L 0.50 TCGA-DK-AA6P-01 2 26684682 26684682 C G OTOF Missense_Mutation p.K1805N 0.42 deleterious(0.02) benign(0.236) TCGA-DK-AA6P-01 2 37014335 37014335 G T VIT Missense_Mutation p.R325L 0.07 tolerated(0.12) benign(0.246) TCGA-DK-AA6P-01 2 46228632 46228632 G T PRKCE Missense_Mutation p.D305Y 0.57 deleterious(0.01) possibly_damaging(0.76) TCGA-DK-AA6P-01 2 48808551 48808551 C G STON1-GTF2A1L Missense_Mutation p.S260C 0.53 tolerated(0.07) probably_damaging(0.998) TCGA-DK-AA6P-01 2 61575180 61575180 C T USP34 Missense_Mutation p.D704N 0.10 tolerated_low_confidence(0.16) benign(0.026) TCGA-DK-AA6P-01 2 62728245 62728245 C G TMEM17 3'UTR 0.32 TCGA-DK-AA6P-01 2 68384716 68384716 A G WDR92 5'Flank 0.15 TCGA-DK-AA6P-01 2 69049484 69049484 G C ARHGAP25 Missense_Mutation p.D405H 0.15 tolerated(0.07) possibly_damaging(0.771) TCGA-DK-AA6P-01 2 84780156 84780156 C G DNAH6 Missense_Mutation p.L534V 0.04 tolerated(0.55) benign(0.007) TCGA-DK-AA6P-01 2 97462811 97462811 G A CNNM4 Missense_Mutation p.E489K 0.23 deleterious(0) possibly_damaging(0.752) TCGA-DK-AA6P-01 2 99993023 99993023 C T EIF5B Missense_Mutation p.S589L 0.09 possibly_damaging(0.452) TCGA-DK-AA6P-01 3 121822629 121822629 T C CD86 Missense_Mutation p.I112T 0.30 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6P-01 3 124449459 124449459 G A UMPS Silent p.P47P 0.07 TCGA-DK-AA6P-01 3 132403616 132403616 G A NPHP3 Missense_Mutation p.R1118C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6P-01 3 133191357 133191357 C G BFSP2 Missense_Mutation p.L398V 0.51 deleterious(0.03) possibly_damaging(0.712) TCGA-DK-AA6P-01 3 136062817 136062817 C G STAG1 Missense_Mutation p.R1101S 0.13 tolerated(0.26) possibly_damaging(0.67) TCGA-DK-AA6P-01 3 15265036 15265036 G A CAPN7 Silent p.L231L 0.14 TCGA-DK-AA6P-01 3 184910375 184910375 C G EHHADH Missense_Mutation p.R604T 0.19 deleterious(0.02) probably_damaging(0.96) TCGA-DK-AA6P-01 3 187009504 187009504 C T MASP1 5'UTR 0.33 TCGA-DK-AA6P-01 3 28365543 28365543 T C AZI2 Missense_Mutation p.Y390C 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.576) TCGA-DK-AA6P-01 3 37550074 37550074 A C ITGA9 Silent p.R285R 0.62 TCGA-DK-AA6P-01 3 44612220 44612220 G A ZKSCAN7 Missense_Mutation p.D540N 0.26 deleterious(0.04) probably_damaging(0.988) TCGA-DK-AA6P-01 3 47887801 47887801 C A DHX30 Silent p.L413L 0.19 TCGA-DK-AA6P-01 3 7456818 7456818 C G GRM7 Nonsense_Mutation p.S381* 0.08 TCGA-DK-AA6P-01 4 1326633 1326633 A T MAEA Missense_Mutation p.T249S 0.16 tolerated(0.09) benign(0.158) TCGA-DK-AA6P-01 4 152070676 152070676 C T SH3D19 Missense_Mutation p.R318Q 0.12 tolerated(0.6) benign(0.01) TCGA-DK-AA6P-01 4 1806089 1806089 G T FGFR3 Missense_Mutation p.G372C 0.60 tolerated(0.07) benign(0.029) TCGA-DK-AA6P-01 4 183603113 183603113 G A TENM3 Missense_Mutation p.E661K 0.08 deleterious(0.04) benign(0.299) TCGA-DK-AA6P-01 4 183603145 183603145 G A TENM3 Nonsense_Mutation p.W671* 0.07 TCGA-DK-AA6P-01 4 185340655 185340655 G A IRF2 Missense_Mutation p.A52V 0.22 deleterious(0) probably_damaging(0.945) TCGA-DK-AA6P-01 4 185550477 185550477 C T CASP3 Silent p.Q261Q 0.20 TCGA-DK-AA6P-01 4 1991432 1991432 C G NELFA Intron 0.12 TCGA-DK-AA6P-01 4 3208558 3208558 C T HTT Nonsense_Mutation p.Q1975* 0.09 TCGA-DK-AA6P-01 4 46930337 46930337 T C GABRA4 Missense_Mutation p.I524V 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-DK-AA6P-01 4 48896040 48896040 G T OCIAD2 Nonsense_Mutation p.S83* 0.08 TCGA-DK-AA6P-01 4 55589838 55589838 G A KIT Nonsense_Mutation p.W440* 0.15 TCGA-DK-AA6P-01 4 57173849 57173849 C T KIAA1211 Missense_Mutation p.S90L 0.11 tolerated(0.06) benign(0.077) TCGA-DK-AA6P-01 4 62599226 62599226 C T LPHN3 Silent p.H383H 0.15 TCGA-DK-AA6P-01 4 79860220 79860220 G T PAQR3 Nonsense_Mutation p.Y53* 0.09 TCGA-DK-AA6P-01 4 89317230 89317230 G C HERC6 Missense_Mutation p.E275Q 0.23 tolerated(0.4) benign(0.035) TCGA-DK-AA6P-01 4 89912062 89912062 C T FAM13A Intron 0.14 TCGA-DK-AA6P-01 5 140011718 140011718 G T CD14 Nonsense_Mutation p.S284* 0.83 TCGA-DK-AA6P-01 5 140229608 140229608 G A PCDHA9 Missense_Mutation p.V510M 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-AA6P-01 5 176794475 176794475 G A RGS14 Missense_Mutation p.E182K 0.35 tolerated(0.08) probably_damaging(0.917) TCGA-DK-AA6P-01 5 179228875 179228875 G A MGAT4B Silent p.L79L 0.87 TCGA-DK-AA6P-01 5 35628646 35628646 C T SPEF2 Missense_Mutation p.S48L 0.18 deleterious(0.01) benign(0.342) TCGA-DK-AA6P-01 5 38963098 38963098 C T RICTOR Missense_Mutation p.M482I 0.07 tolerated(0.08) benign(0.079) TCGA-DK-AA6P-01 5 52360925 52360925 A G ITGA2 Missense_Mutation p.I596V 0.12 tolerated(0.07) benign(0.034) TCGA-DK-AA6P-01 5 55248113 55248113 C T IL6ST Missense_Mutation p.S506N 0.09 tolerated(0.12) benign(0.002) TCGA-DK-AA6P-01 6 143810346 143810346 C T PEX3 Nonsense_Mutation p.Q369* 0.07 TCGA-DK-AA6P-01 6 144800975 144800975 G T UTRN Nonsense_Mutation p.E1122* 0.04 TCGA-DK-AA6P-01 6 144812185 144812185 G C UTRN Missense_Mutation p.D1462H 0.98 deleterious(0) possibly_damaging(0.67) TCGA-DK-AA6P-01 6 145956523 145956523 G A EPM2A Silent p.F192F 0.06 TCGA-DK-AA6P-01 6 158074650 158074650 G C ZDHHC14 Missense_Mutation p.Q353H 0.37 tolerated(0.24) benign(0.004) TCGA-DK-AA6P-01 6 160169389 160169389 T G WTAP Missense_Mutation p.F147C 0.76 deleterious(0) possibly_damaging(0.845) TCGA-DK-AA6P-01 6 26056108 26056108 C T HIST1H1C Silent p.K183K 0.40 TCGA-DK-AA6P-01 6 26056117 26056117 C T HIST1H1C Silent p.A180A 0.42 TCGA-DK-AA6P-01 6 27782937 27782937 C T HIST1H2BM Missense_Mutation p.S39F 0.20 deleterious_low_confidence(0.01) benign(0.124) TCGA-DK-AA6P-01 6 3085627 3085627 C T RIPK1 Missense_Mutation p.R275W 0.12 deleterious(0) probably_damaging(1) TCGA-DK-AA6P-01 6 33665403 33665403 G C UQCC2 3'UTR 0.12 TCGA-DK-AA6P-01 6 36567603 36567603 C - SRSF3 Intron 0.27 TCGA-DK-AA6P-01 6 43589890 43589890 C T GTPBP2 Silent p.V494V 0.26 TCGA-DK-AA6P-01 7 103393653 103393653 C G RELN Missense_Mutation p.D185H 0.09 deleterious(0.04) benign(0.043) TCGA-DK-AA6P-01 7 2260563 2260563 C A MAD1L1 Intron 0.43 TCGA-DK-AA6P-01 7 43982618 43982618 C G UBE2D4 Missense_Mutation p.F62L 0.20 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-DK-AA6P-01 7 48556398 48556398 C A ABCA13 Nonsense_Mutation p.S4573* 0.09 TCGA-DK-AA6P-01 7 74114641 74114641 G T GTF2I Silent p.S146S 0.09 TCGA-DK-AA6P-01 7 99695910 99695910 C T MCM7 Missense_Mutation p.D242N 0.54 tolerated(0.13) possibly_damaging(0.889) TCGA-DK-AA6P-01 7 99696879 99696879 C G MCM7 Intron 0.46 TCGA-DK-AA6P-01 8 125463144 125463144 G A TRMT12 5'UTR 0.08 TCGA-DK-AA6P-01 8 22034630 22034630 C T BMP1 Silent p.I236I 0.38 TCGA-DK-AA6P-01 8 87616339 87616339 G A CNGB3 Missense_Mutation p.S588L 0.09 deleterious(0) possibly_damaging(0.763) TCGA-DK-AA6P-01 9 125551798 125551798 C T OR5C1 Missense_Mutation p.T196I 0.08 tolerated(0.11) benign(0.15) TCGA-DK-AA6P-01 9 127174633 127174633 G C PSMB7 Missense_Mutation p.F131L 0.06 deleterious(0) probably_damaging(0.948) TCGA-DK-AA6P-01 9 135759350 135759350 G C C9orf9 Missense_Mutation p.E6Q 0.09 tolerated(0.17) possibly_damaging(0.766) TCGA-DK-AA6P-01 9 27190532 27190532 C A TEK Missense_Mutation p.P445T 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6P-01 9 32784923 32784923 T C TMEM215 3'UTR 0.25 TCGA-DK-AA6P-01 X 106034371 106034371 G A RNF128 Missense_Mutation p.E354K 0.06 deleterious(0.01) probably_damaging(0.939) TCGA-DK-AA6P-01 X 150909295 150909295 C T CNGA2 Missense_Mutation p.P135L 0.82 deleterious(0) probably_damaging(0.953) TCGA-DK-AA6P-01 X 44870230 44870230 G C KDM6A Missense_Mutation p.G137R 0.80 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6P-01 X 62570096 62570096 C A SPIN4 Silent p.V201V 0.13 TCGA-DK-AA6P-01 X 86868916 86868916 C T KLHL4 Silent p.T153T 0.93 TCGA-DK-AA6Q-01 10 53667325 53667325 G A PRKG1 Missense_Mutation p.E253K 0.30 deleterious(0.02) possibly_damaging(0.677) TCGA-DK-AA6Q-01 10 85972056 85972056 G A CDHR1 Missense_Mutation p.V559I 0.29 tolerated(0.22) benign(0.009) TCGA-DK-AA6Q-01 11 10555684 10555684 G C RNF141 Missense_Mutation p.Q8E 0.22 tolerated_low_confidence(0.28) benign(0.061) TCGA-DK-AA6Q-01 11 123886818 123886818 C T OR10G4 Silent p.D179D 0.28 TCGA-DK-AA6Q-01 11 36594953 36594953 C T RAG1 Silent p.F33F 0.28 TCGA-DK-AA6Q-01 11 418572 418572 G C ANO9 Missense_Mutation p.I716M 0.32 deleterious(0) probably_damaging(0.975) TCGA-DK-AA6Q-01 11 59480753 59480753 G A OR10V1 Missense_Mutation p.A189V 0.15 tolerated(0.26) possibly_damaging(0.895) TCGA-DK-AA6Q-01 11 62546373 62546375 CTT - TAF6L In_Frame_Del p.L158del 0.08 TCGA-DK-AA6Q-01 11 65350286 65350286 G A EHBP1L1 Missense_Mutation p.E715K 0.25 tolerated(0.27) benign(0.123) TCGA-DK-AA6Q-01 11 65351751 65351751 G C EHBP1L1 Missense_Mutation p.E1045Q 0.26 deleterious(0.01) benign(0.098) TCGA-DK-AA6Q-01 11 67265124 67265124 A G PITPNM1 Silent p.F603F 0.51 TCGA-DK-AA6Q-01 11 67265151 67265151 C G PITPNM1 Splice_Site p.X595_splice 0.52 TCGA-DK-AA6Q-01 11 78443582 78443582 G A TENM4 Missense_Mutation p.R973W 0.39 tolerated(0.07) benign(0.339) TCGA-DK-AA6Q-01 11 87908475 87908475 G C RAB38 Missense_Mutation p.I26M 0.14 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 11 9199867 9199867 G C DENND5A Nonsense_Mutation p.S573* 0.23 TCGA-DK-AA6Q-01 12 11286721 11286721 G C TAS2R30 Missense_Mutation p.I41M 0.36 tolerated(0.15) probably_damaging(0.996) TCGA-DK-AA6Q-01 12 12980270 12980270 G C DDX47 Silent p.L399L 0.33 TCGA-DK-AA6Q-01 12 18747479 18747479 G T PIK3C2G Nonsense_Mutation p.E1314* 0.22 TCGA-DK-AA6Q-01 12 25256983 25256983 C A LRMP Nonsense_Mutation p.S346* 0.16 TCGA-DK-AA6Q-01 12 42854096 42854096 G C PRICKLE1 Missense_Mutation p.H671D 0.39 deleterious(0.01) benign(0.23) TCGA-DK-AA6Q-01 12 70938416 70938416 G C PTPRB Silent p.L1805L 0.36 TCGA-DK-AA6Q-01 12 88900095 88900095 C G KITLG Missense_Mutation p.E259Q 0.10 tolerated(0.09) probably_damaging(1) TCGA-DK-AA6Q-01 13 113803841 113803841 C G F10 3'UTR 0.26 TCGA-DK-AA6Q-01 13 92380835 92380835 G A GPC5 Missense_Mutation p.R357H 0.22 tolerated(0.62) benign(0.005) TCGA-DK-AA6Q-01 14 24619496 24619496 G C RNF31 Missense_Mutation p.E346Q 0.29 tolerated(0.43) benign(0.101) TCGA-DK-AA6Q-01 14 60591738 60591738 C T PCNXL4 Missense_Mutation p.S716L 0.42 tolerated(0.47) benign(0.001) TCGA-DK-AA6Q-01 14 68024022 68024022 C G PLEKHH1 Missense_Mutation p.L76V 0.53 tolerated(0.75) benign(0.009) TCGA-DK-AA6Q-01 14 71199823 71199823 C T MAP3K9 Missense_Mutation p.G769S 0.32 tolerated(0.05) probably_damaging(0.918) TCGA-DK-AA6Q-01 14 94962748 94962748 C T SERPINA12 Silent p.V289V 0.22 TCGA-DK-AA6Q-01 14 96775862 96775862 C T ATG2B Missense_Mutation p.D1411N 0.32 tolerated(0.06) possibly_damaging(0.885) TCGA-DK-AA6Q-01 15 23811229 23811229 C A MKRN3 Silent p.I100I 0.46 TCGA-DK-AA6Q-01 15 52511967 52511967 T A MYO5C Silent p.G1258G 0.38 TCGA-DK-AA6Q-01 15 52511968 52511968 C T MYO5C Missense_Mutation p.G1258E 0.37 tolerated(0.69) benign(0.004) TCGA-DK-AA6Q-01 16 10861904 10861904 G C TVP23A 3'UTR 0.56 TCGA-DK-AA6Q-01 16 30409417 30409417 G C ZNF48 Missense_Mutation p.K282N 0.40 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6Q-01 16 50259099 50259099 G A PAPD5 Missense_Mutation p.R553K 0.54 tolerated(0.86) benign(0.003) TCGA-DK-AA6Q-01 16 53524039 53524039 T C RBL2 Intron 0.54 TCGA-DK-AA6Q-01 16 68855960 68855960 G A CDH1 Missense_Mutation p.D590N 0.35 deleterious(0) possibly_damaging(0.659) TCGA-DK-AA6Q-01 16 76556109 76556109 G A CNTNAP4 Missense_Mutation p.A831T 0.36 tolerated(0.4) benign(0.013) TCGA-DK-AA6Q-01 16 89167520 89167520 C T ACSF3 Missense_Mutation p.S144F 0.58 deleterious(0) probably_damaging(0.958) TCGA-DK-AA6Q-01 17 43182991 43182991 G C NMT1 Missense_Mutation p.G492A 0.17 tolerated(0.11) benign(0.155) TCGA-DK-AA6Q-01 17 48072117 48072117 G - DLX3 Frame_Shift_Del p.K83Sfs*29 0.18 TCGA-DK-AA6Q-01 17 67197703 67197703 C T ABCA10 Silent p.E371E 0.35 TCGA-DK-AA6Q-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.51 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 18 47101774 47101774 G A LIPG Missense_Mutation p.D203N 0.18 tolerated(0.05) benign(0.262) TCGA-DK-AA6Q-01 18 61166361 61166361 C T SERPINB5 Silent p.T192T 0.18 TCGA-DK-AA6Q-01 18 61262392 61262392 C A SERPINB13 Missense_Mutation p.P249T 0.13 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 19 10476481 10476481 G T TYK2 Missense_Mutation p.F241L 0.50 deleterious(0) possibly_damaging(0.847) TCGA-DK-AA6Q-01 19 19033467 19033467 C T DDX49 Silent p.V230V 0.34 TCGA-DK-AA6Q-01 19 36033257 36033257 G C GAPDHS Silent p.G162G 0.11 TCGA-DK-AA6Q-01 19 40903791 40903791 G A PRX Silent p.V156V 0.38 TCGA-DK-AA6Q-01 19 48244520 48244520 G A EHD2 Missense_Mutation p.R488H 0.32 tolerated(0.13) benign(0.056) TCGA-DK-AA6Q-01 19 54711337 54711337 C T RPS9 Missense_Mutation p.S160F 0.33 tolerated(0.17) benign(0.008) TCGA-DK-AA6Q-01 19 57640383 57640383 G T USP29 Missense_Mutation p.D114Y 0.26 tolerated(0.41) probably_damaging(0.936) TCGA-DK-AA6Q-01 19 57646790 57646790 T G ZIM3 Missense_Mutation p.K305N 0.28 deleterious(0) possibly_damaging(0.805) TCGA-DK-AA6Q-01 19 6730396 6730396 C A GPR108 Splice_Site p.X520_splice 0.38 TCGA-DK-AA6Q-01 19 9058017 9058017 G C MUC16 Nonsense_Mutation p.S9810* 0.51 TCGA-DK-AA6Q-01 1 156235879 156235879 C T SMG5 Missense_Mutation p.M516I 0.42 deleterious(0.03) possibly_damaging(0.713) TCGA-DK-AA6Q-01 1 159923879 159923879 C T SLAMF9 Intron 0.33 TCGA-DK-AA6Q-01 1 17046559 17046559 C T ESPNP RNA 0.13 TCGA-DK-AA6Q-01 1 176525904 176525904 G T PAPPA2 Missense_Mutation p.G149V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.49) TCGA-DK-AA6Q-01 1 185067380 185067380 T A RNF2 Missense_Mutation p.M214K 0.24 tolerated(0.92) benign(0.002) TCGA-DK-AA6Q-01 1 186038811 186038811 G A HMCN1 Silent p.Q2632Q 0.29 TCGA-DK-AA6Q-01 1 19180734 19180734 G A TAS1R2 Silent p.C410C 0.15 TCGA-DK-AA6Q-01 1 205779514 205779514 G A SLC41A1 Missense_Mutation p.S19F 0.36 tolerated_low_confidence(0.27) benign(0.001) TCGA-DK-AA6Q-01 1 206821423 206821423 G A DYRK3 Missense_Mutation p.D294N 0.30 tolerated(1) probably_damaging(0.997) TCGA-DK-AA6Q-01 1 210522376 210522376 C T HHAT Intron 0.25 TCGA-DK-AA6Q-01 1 220928441 220928441 C T MARC2 Missense_Mutation p.S142L 0.30 tolerated(0.07) benign(0.438) TCGA-DK-AA6Q-01 1 33404102 33404102 C G RNF19B Missense_Mutation p.K547N 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-DK-AA6Q-01 1 39888514 39888514 A G MACF1 Missense_Mutation p.N3302S 0.32 probably_damaging(0.999) TCGA-DK-AA6Q-01 1 42047114 42047114 C T HIVEP3 Missense_Mutation p.E1119K 0.33 probably_damaging(0.993) TCGA-DK-AA6Q-01 1 44437211 44437211 G A DPH2 Missense_Mutation p.E213K 0.24 deleterious(0.03) benign(0.14) TCGA-DK-AA6Q-01 1 51826899 51826899 C T EPS15 Missense_Mutation p.A830T 0.16 tolerated(0.29) benign(0.001) TCGA-DK-AA6Q-01 1 87563542 87563542 G A HS2ST1 Missense_Mutation p.E204K 0.07 tolerated(0.97) benign(0.004) TCGA-DK-AA6Q-01 20 25206302 25206302 G C ENTPD6 3'UTR 0.52 TCGA-DK-AA6Q-01 20 40864899 40864899 C A PTPRT Splice_Site p.X771_splice 0.28 TCGA-DK-AA6Q-01 20 4855234 4855234 G C SLC23A2 Missense_Mutation p.F311L 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-DK-AA6Q-01 20 62842646 62842646 A G MYT1 Missense_Mutation p.H460R 0.33 probably_damaging(0.999) TCGA-DK-AA6Q-01 20 9459585 9459585 G C PLCB4 Missense_Mutation p.D1172H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-DK-AA6Q-01 21 30714963 30714963 G A BACH1 Missense_Mutation p.D674N 0.11 tolerated(0.08) benign(0.004) TCGA-DK-AA6Q-01 21 34793951 34793951 C T IFNGR2 Missense_Mutation p.S124F 0.17 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 22 22681916 22681916 C T IGLV1-50 Missense_Mutation p.P33L 0.14 tolerated_low_confidence(1) benign(0.008) TCGA-DK-AA6Q-01 22 30886119 30886119 G A SEC14L4 Missense_Mutation p.A399V 0.21 tolerated_low_confidence(0.06) benign(0.079) TCGA-DK-AA6Q-01 22 50278989 50278989 C T ZBED4 Missense_Mutation p.T560I 0.49 deleterious(0) possibly_damaging(0.82) TCGA-DK-AA6Q-01 22 50852998 50852998 G A PPP6R2 Silent p.K144K 0.09 TCGA-DK-AA6Q-01 2 113089182 113089182 C G ZC3H6 Missense_Mutation p.S896C 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-DK-AA6Q-01 2 113089362 113089362 C A ZC3H6 Nonsense_Mutation p.S956* 0.33 TCGA-DK-AA6Q-01 2 165952089 165952089 C T SCN3A Missense_Mutation p.G1455R 0.24 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.61 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 2 179434829 179434829 G A TTN Missense_Mutation p.R25344W 0.35 TCGA-DK-AA6Q-01 2 202580523 202580523 C T ALS2 Silent p.K1292K 0.32 TCGA-DK-AA6Q-01 2 204000762 204000762 C T NBEAL1 Silent p.F1363F 0.33 TCGA-DK-AA6Q-01 2 210558492 210558492 T G MAP2 Missense_Mutation p.I533S 0.38 tolerated_low_confidence(0.45) benign(0.004) TCGA-DK-AA6Q-01 2 227967885 227967885 C T COL4A4 Missense_Mutation p.G282E 0.32 possibly_damaging(0.789) TCGA-DK-AA6Q-01 2 241976303 241976303 C G SNED1 Missense_Mutation p.S301W 0.35 deleterious(0) probably_damaging(0.96) TCGA-DK-AA6Q-01 2 29295002 29295002 C G C2orf71 Missense_Mutation p.G709A 0.43 tolerated(0.3) benign(0.044) TCGA-DK-AA6Q-01 2 33003045 33003045 G A TTC27 Missense_Mutation p.D593N 0.34 deleterious(0) probably_damaging(0.971) TCGA-DK-AA6Q-01 2 49190117 49190117 G A FSHR Missense_Mutation p.H615Y 0.22 tolerated(1) benign(0) TCGA-DK-AA6Q-01 2 54857114 54857114 G C SPTBN1 Missense_Mutation p.G919R 0.26 tolerated(0.18) possibly_damaging(0.815) TCGA-DK-AA6Q-01 2 86259451 86259451 C G POLR1A Missense_Mutation p.E1406Q 0.24 tolerated(0.12) benign(0.21) TCGA-DK-AA6Q-01 2 87042592 87042592 G C CD8B 3'Flank 0.33 TCGA-DK-AA6Q-01 2 88082634 88082634 C G RGPD2 Missense_Mutation p.Q1303H 0.36 tolerated(0.07) benign(0.387) TCGA-DK-AA6Q-01 3 151078259 151078259 C T MED12L Intron 0.16 TCGA-DK-AA6Q-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.70 deleterious(0.02) probably_damaging(0.959) TCGA-DK-AA6Q-01 3 179462890 179462890 C T USP13 Missense_Mutation p.P532S 0.63 tolerated(0.15) probably_damaging(1) TCGA-DK-AA6Q-01 3 183756233 183756233 G A HTR3D Missense_Mutation p.G319D 0.65 tolerated(0.05) possibly_damaging(0.664) TCGA-DK-AA6Q-01 3 192516742 192516742 G A MB21D2 Silent p.S303S 0.59 TCGA-DK-AA6Q-01 3 36888731 36888731 G A TRANK1 Missense_Mutation p.S1621F 0.57 tolerated(0.09) possibly_damaging(0.515) TCGA-DK-AA6Q-01 3 9877115 9877115 G C TTLL3 Missense_Mutation p.G897A 0.50 tolerated_low_confidence(0.19) benign(0.001) TCGA-DK-AA6Q-01 4 16020070 16020070 C G PROM1 Missense_Mutation p.S293T 0.47 tolerated(0.39) benign(0.038) TCGA-DK-AA6Q-01 4 188924650 188924650 C T ZFP42 Missense_Mutation p.S230L 0.42 deleterious(0) benign(0.203) TCGA-DK-AA6Q-01 4 9785102 9785102 C G DRD5 3'UTR 0.68 TCGA-DK-AA6Q-01 5 126790287 126790287 G A MEGF10 Missense_Mutation p.G1004R 0.52 tolerated(0.19) benign(0.006) TCGA-DK-AA6Q-01 5 137803554 137803554 C A EGR1 Silent p.T472T 0.09 TCGA-DK-AA6Q-01 5 140594745 140594745 G A PCDHB13 Missense_Mutation p.M350I 0.59 tolerated_low_confidence(0.72) benign(0.001) TCGA-DK-AA6Q-01 5 175913420 175913420 C T FAF2 Missense_Mutation p.S66L 0.57 tolerated(0.23) benign(0.013) TCGA-DK-AA6Q-01 5 37125461 37125461 C A C5orf42 Missense_Mutation p.R2894I 0.22 deleterious(0) probably_damaging(0.918) TCGA-DK-AA6Q-01 5 41005642 41005642 G A MROH2B Silent p.F1285F 0.44 TCGA-DK-AA6Q-01 6 111901575 111901575 G A TRAF3IP2 Nonsense_Mutation p.R283* 0.57 TCGA-DK-AA6Q-01 6 118588271 118588271 C T SLC35F1 Silent p.G197G 0.42 TCGA-DK-AA6Q-01 6 138584598 138584598 C G KIAA1244 Missense_Mutation p.L660V 0.53 deleterious(0.03) probably_damaging(0.997) TCGA-DK-AA6Q-01 6 160210513 160210513 G C TCP1 5'UTR 0.60 TCGA-DK-AA6Q-01 6 170112610 170112610 G A PHF10 Silent p.L277L 0.50 TCGA-DK-AA6Q-01 6 26199793 26199793 G A HIST1H2BF Missense_Mutation p.E3K 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-DK-AA6Q-01 7 100807886 100807886 C T VGF Missense_Mutation p.R80Q 0.60 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DK-AA6Q-01 7 129040161 129040161 C T AHCYL2 Missense_Mutation p.S285L 0.42 deleterious(0) benign(0.091) TCGA-DK-AA6Q-01 7 149494362 149494362 T C SSPO Intron 0.40 TCGA-DK-AA6Q-01 7 149494363 149494363 C A SSPO RNA 0.44 TCGA-DK-AA6Q-01 7 26224360 26224360 C T NFE2L3 Missense_Mutation p.H348Y 0.30 tolerated(0.92) benign(0.232) TCGA-DK-AA6Q-01 7 33135012 33135012 G C RP9 Missense_Mutation p.S167C 0.28 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-DK-AA6Q-01 7 42977217 42977217 C T MRPL32 3'UTR 0.45 TCGA-DK-AA6Q-01 7 45016160 45016160 C A MYO1G Intron 0.34 TCGA-DK-AA6Q-01 7 82584948 82584948 G A PCLO Missense_Mutation p.S1774L 0.34 unknown(0) TCGA-DK-AA6Q-01 7 83031956 83031956 G A SEMA3E Missense_Mutation p.P379S 0.15 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 8 145736023 145736023 C T MFSD3 Silent p.L291L 0.31 TCGA-DK-AA6Q-01 8 18541309 18541309 G C PSD3 Intron 0.31 TCGA-DK-AA6Q-01 8 18541542 18541542 G C PSD3 Intron 0.41 TCGA-DK-AA6Q-01 8 42173746 42173748 GGA - IKBKB In_Frame_Del p.E274del 0.26 TCGA-DK-AA6Q-01 9 123550458 123550458 C T FBXW2 Missense_Mutation p.E27K 0.35 tolerated(0.86) benign(0.023) TCGA-DK-AA6Q-01 9 123550531 123550531 C G FBXW2 Missense_Mutation p.E2D 0.41 tolerated_low_confidence(0.28) benign(0.003) TCGA-DK-AA6Q-01 9 131745801 131745801 C G NUP188 Missense_Mutation p.P645A 0.51 tolerated(0.75) benign(0.287) TCGA-DK-AA6Q-01 9 135278023 135278023 G A TTF1 Silent p.L62L 0.33 TCGA-DK-AA6Q-01 9 136199549 136199549 C T SURF6 Silent p.R147R 0.32 TCGA-DK-AA6Q-01 9 14801855 14801855 C T FREM1 Missense_Mutation p.M1163I 0.59 tolerated(0.22) benign(0.015) TCGA-DK-AA6Q-01 9 21971048 21971058 GCCGCGCCCCG - CDKN2A Frame_Shift_Del p.A102Rfs*14 0.35 TCGA-DK-AA6Q-01 9 6013640 6013640 C A RANBP6 Silent p.V656V 0.57 TCGA-DK-AA6Q-01 9 86414187 86414187 G A GKAP1 Silent p.N91N 0.04 TCGA-DK-AA6Q-01 X 109695629 109695630 AC - RGAG1 Frame_Shift_Del p.T596Sfs*42 0.25 TCGA-DK-AA6Q-01 X 134680353 134680353 G A DDX26B Missense_Mutation p.D130N 0.32 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6Q-01 X 136113397 136113397 C T GPR101 Missense_Mutation p.R146H 0.17 tolerated(0.25) benign(0.182) TCGA-DK-AA6Q-01 X 18323120 18323120 T C SCML2 Silent p.G234G 0.05 TCGA-DK-AA6Q-01 X 229440 229440 G A GTPBP6 Silent p.T74T 0.39 TCGA-DK-AA6Q-01 X 41203612 41203612 G C DDX3X Missense_Mutation p.D329H 0.43 deleterious(0) probably_damaging(1) TCGA-DK-AA6Q-01 X 47920265 47920265 C G ZNF630 Missense_Mutation p.L25F 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6Q-01 X 65417643 65417643 C G HEPH Missense_Mutation p.F594L 0.28 deleterious(0.01) benign(0.217) TCGA-DK-AA6R-01 10 105906076 105906076 C A WDR96 Missense_Mutation p.R1267I 0.27 deleterious(0) benign(0.199) TCGA-DK-AA6R-01 10 106214250 106214250 G A CCDC147 Missense_Mutation p.G861S 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-DK-AA6R-01 10 106214343 106214344 - T CCDC147 3'UTR 0.25 TCGA-DK-AA6R-01 10 114900993 114900993 G T TCF7L2 Silent p.T201T 0.16 TCGA-DK-AA6R-01 10 118960741 118960741 A G KCNK18 Missense_Mutation p.T99A 0.19 tolerated(0.88) benign(0.002) TCGA-DK-AA6R-01 10 120450859 120450859 G A CACUL1 Missense_Mutation p.P315S 0.26 tolerated(0.26) benign(0.173) TCGA-DK-AA6R-01 10 126517396 126517396 C A FAM175B Nonsense_Mutation p.S177* 0.30 TCGA-DK-AA6R-01 10 16553256 16553256 G A PTER 3'UTR 0.18 TCGA-DK-AA6R-01 10 16893373 16893373 G A CUBN Missense_Mutation p.S3175L 0.21 tolerated(0.8) benign(0.021) TCGA-DK-AA6R-01 10 26432491 26432491 G C MYO3A Missense_Mutation p.E793Q 0.51 deleterious(0) probably_damaging(0.953) TCGA-DK-AA6R-01 10 35928771 35928771 C T FZD8 Silent p.L529L 0.39 TCGA-DK-AA6R-01 10 50959929 50959929 C T OGDHL Missense_Mutation p.M231I 0.07 tolerated(0.17) benign(0.017) TCGA-DK-AA6R-01 10 51761793 51761793 G T AGAP6 Missense_Mutation p.C145F 0.03 deleterious_low_confidence(0.01) benign(0.007) TCGA-DK-AA6R-01 10 5789240 5789240 C G FAM208B Missense_Mutation p.L1286V 0.25 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6R-01 10 5951259 5951259 T - FBXO18 Splice_Site p.X391_splice 0.16 TCGA-DK-AA6R-01 10 64415128 64415128 C G ZNF365 Intron 0.42 TCGA-DK-AA6R-01 10 64968978 64968978 C A JMJD1C Missense_Mutation p.W904C 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6R-01 10 6521008 6521008 G T PRKCQ Silent p.S433S 0.11 TCGA-DK-AA6R-01 10 6521009 6521009 G T PRKCQ Missense_Mutation p.S433Y 0.11 deleterious(0) probably_damaging(0.952) TCGA-DK-AA6R-01 10 73588653 73588653 C A PSAP Missense_Mutation p.R186L 0.22 tolerated(0.15) benign(0.007) TCGA-DK-AA6R-01 10 74034069 74034069 C T DDIT4 Missense_Mutation p.S32L 0.20 tolerated(0.37) benign(0.023) TCGA-DK-AA6R-01 10 90750654 90750654 C T FAS Silent p.L7L 0.28 TCGA-DK-AA6R-01 10 91099934 91099934 C A IFIT3 3'UTR 0.42 TCGA-DK-AA6R-01 10 92508999 92508999 C A HTR7 Nonsense_Mutation p.E298* 0.21 TCGA-DK-AA6R-01 10 92509000 92509000 C G HTR7 Missense_Mutation p.K297N 0.21 tolerated(0.14) benign(0.05) TCGA-DK-AA6R-01 10 97772458 97772458 T C CC2D2B Missense_Mutation p.I97T 0.27 tolerated(0.5) benign(0.015) TCGA-DK-AA6R-01 11 103908440 103908440 G C DDI1 Missense_Mutation p.R297T 0.54 tolerated(0.09) benign(0.015) TCGA-DK-AA6R-01 11 119005105 119005105 C G HINFP Missense_Mutation p.S484C 0.28 deleterious(0.03) benign(0.243) TCGA-DK-AA6R-01 11 124294407 124294407 G T OR8B4 Missense_Mutation p.R121S 0.24 deleterious_low_confidence(0) benign(0.354) TCGA-DK-AA6R-01 11 1257645 1257645 C A MUC5B Silent p.T970T 0.19 TCGA-DK-AA6R-01 11 1264883 1264883 G A MUC5B Missense_Mutation p.S2258N 0.27 possibly_damaging(0.775) TCGA-DK-AA6R-01 11 130319567 130319567 C A ADAMTS15 Missense_Mutation p.F233L 0.40 deleterious(0.03) probably_damaging(0.963) TCGA-DK-AA6R-01 11 133714143 133714143 C G SPATA19 Missense_Mutation p.W119C 0.14 deleterious(0) probably_damaging(0.95) TCGA-DK-AA6R-01 11 2154363 2154363 G C IGF2 Missense_Mutation p.L189V 0.38 tolerated(0.09) possibly_damaging(0.478) TCGA-DK-AA6R-01 11 28098656 28098656 C T KIF18A Silent p.L441L 0.09 TCGA-DK-AA6R-01 11 30915869 30915869 C A DCDC1 Missense_Mutation p.V1607L 0.26 deleterious(0.01) benign(0.315) TCGA-DK-AA6R-01 11 34139975 34139975 G C NAT10 Silent p.L235L 0.88 TCGA-DK-AA6R-01 11 34167729 34167729 G T NAT10 Missense_Mutation p.R1023L 0.04 deleterious(0.01) unknown(0) TCGA-DK-AA6R-01 11 45827607 45827607 G T SLC35C1 Silent p.T85T 0.40 TCGA-DK-AA6R-01 11 48328662 48328662 G C OR4S1 Missense_Mutation p.M296I 0.26 tolerated(0.26) benign(0.014) TCGA-DK-AA6R-01 11 4968080 4968080 A T OR51A4 Nonsense_Mutation p.L84* 0.23 TCGA-DK-AA6R-01 11 4968101 4968101 A G OR51A4 Missense_Mutation p.L77S 0.22 tolerated(0.05) benign(0.035) TCGA-DK-AA6R-01 11 55062939 55062939 G A TRIM51HP Intron 0.36 TCGA-DK-AA6R-01 11 60665571 60665571 A C PRPF19 Splice_Site p.X437_splice 0.26 TCGA-DK-AA6R-01 11 6231320 6231320 C A C11orf42 Silent p.R105R 0.33 TCGA-DK-AA6R-01 11 62430556 62430556 T C C11orf48 3'UTR 0.13 TCGA-DK-AA6R-01 11 62559882 62559882 C T NXF1 3'UTR 0.20 TCGA-DK-AA6R-01 11 64026046 64026046 G A PLCB3 Missense_Mutation p.E372K 0.15 deleterious(0) benign(0.219) TCGA-DK-AA6R-01 11 66130934 66130934 G A SLC29A2 Silent p.L448L 0.18 TCGA-DK-AA6R-01 11 66130950 66130950 G A SLC29A2 Missense_Mutation p.S443F 0.25 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6R-01 11 66131860 66131860 G A SLC29A2 Silent p.V365V 0.41 TCGA-DK-AA6R-01 11 6790178 6790178 C T OR2AG2 Missense_Mutation p.R4Q 0.28 tolerated(0.57) benign(0.001) TCGA-DK-AA6R-01 11 73008279 73008279 G A P2RY6 Missense_Mutation p.R239H 0.17 deleterious(0.03) benign(0.136) TCGA-DK-AA6R-01 11 89531351 89531351 T A TRIM49 Missense_Mutation p.N436Y 0.22 deleterious(0.02) benign(0.158) TCGA-DK-AA6R-01 11 89768660 89768660 G C TRIM49C Missense_Mutation p.G94A 0.16 deleterious(0.04) benign(0.217) TCGA-DK-AA6R-01 12 112654629 112654629 C T HECTD4 Missense_Mutation p.E2299K 0.19 possibly_damaging(0.458) TCGA-DK-AA6R-01 12 11461448 11461448 G A PRB4 Missense_Mutation p.P157S 0.40 tolerated_low_confidence(0.28) unknown(0) TCGA-DK-AA6R-01 12 121615100 121615100 G T P2RX7 Missense_Mutation p.A347S 0.12 tolerated(0.05) probably_damaging(0.979) TCGA-DK-AA6R-01 12 128899621 128899621 C T TMEM132C Missense_Mutation p.R144W 0.91 tolerated(0.14) benign(0.033) TCGA-DK-AA6R-01 12 13068778 13068778 G A GPRC5A 3'UTR 0.29 TCGA-DK-AA6R-01 12 26218161 26218161 A T RASSF8 Missense_Mutation p.Q278H 0.23 tolerated(0.19) benign(0.001) TCGA-DK-AA6R-01 12 29920926 29920926 G A TMTC1 Silent p.L129L 0.33 TCGA-DK-AA6R-01 12 40626181 40626181 C T LRRK2 Missense_Mutation p.H115Y 0.32 tolerated(0.08) possibly_damaging(0.569) TCGA-DK-AA6R-01 12 51092153 51092153 C G DIP2B Silent p.L697L 0.26 TCGA-DK-AA6R-01 12 53170681 53170681 C A KRT76 Missense_Mutation p.G132V 0.40 tolerated(0.4) unknown(0) TCGA-DK-AA6R-01 12 56295980 56295980 C T WIBG Silent p.R97R 0.52 TCGA-DK-AA6R-01 12 64890995 64890995 G C TBK1 Missense_Mutation p.D639H 0.34 tolerated(0.09) possibly_damaging(0.503) TCGA-DK-AA6R-01 12 6649554 6649554 G A IFFO1 3'UTR 0.44 TCGA-DK-AA6R-01 12 7252578 7252578 C T C1RL Missense_Mutation p.E179K 0.28 tolerated(0.47) benign(0.001) TCGA-DK-AA6R-01 13 100637337 100637337 C A ZIC2 Missense_Mutation p.P405T 0.14 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6R-01 13 100637338 100637338 C A ZIC2 Missense_Mutation p.P405H 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6R-01 13 100637340 100637340 A T ZIC2 Missense_Mutation p.S406C 0.13 deleterious(0) probably_damaging(0.991) TCGA-DK-AA6R-01 13 102527632 102527632 C T FGF14 Missense_Mutation p.G75S 0.39 deleterious(0) possibly_damaging(0.54) TCGA-DK-AA6R-01 13 19748149 19748149 C T TUBA3C Missense_Mutation p.A403T 0.20 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-DK-AA6R-01 13 21148539 21148539 G T IFT88 Silent p.V14V 0.30 TCGA-DK-AA6R-01 13 25876009 25876009 G A NUPL1 Missense_Mutation p.G33E 0.19 deleterious(0.04) unknown(0) TCGA-DK-AA6R-01 13 29599351 29599351 G A MTUS2 Silent p.L182L 0.16 TCGA-DK-AA6R-01 13 49705358 49705358 G T FNDC3A Missense_Mutation p.R113L 0.46 tolerated(0.65) possibly_damaging(0.483) TCGA-DK-AA6R-01 13 79940289 79940290 CC T RBM26 Frame_Shift_Del p.M392Ifs*15 0.16 TCGA-DK-AA6R-01 14 105175045 105175045 A G INF2 Missense_Mutation p.N642S 0.13 deleterious(0.04) unknown(0) TCGA-DK-AA6R-01 14 105411219 105411219 A C AHNAK2 Missense_Mutation p.I3523M 0.16 possibly_damaging(0.506) TCGA-DK-AA6R-01 14 106110915 106110915 C T IGHG2 Silent p.V71V 0.47 TCGA-DK-AA6R-01 14 20482425 20482425 G A OR4K14 Nonsense_Mutation p.Q310* 0.47 TCGA-DK-AA6R-01 14 20841685 20841685 C A TEP1 Missense_Mutation p.R2221L 0.57 tolerated(0.09) possibly_damaging(0.693) TCGA-DK-AA6R-01 14 21469664 21469664 G C SLC39A2 Missense_Mutation p.E286Q 0.23 deleterious(0.05) probably_damaging(0.981) TCGA-DK-AA6R-01 14 21469737 21469737 G C SLC39A2 Nonstop_Mutation p.*310Sext*11 0.21 TCGA-DK-AA6R-01 14 22409404 22409404 C G TRAV9-2 Silent p.L12L 0.22 TCGA-DK-AA6R-01 14 24886579 24886579 T G NYNRIN Missense_Mutation p.I1875S 0.27 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-DK-AA6R-01 14 51378473 51378473 G A PYGL Silent p.N648N 0.20 TCGA-DK-AA6R-01 14 65259997 65259997 C T SPTB Missense_Mutation p.S795N 0.09 tolerated(0.33) benign(0.002) TCGA-DK-AA6R-01 14 67843249 67843249 G A EIF2S1 Missense_Mutation p.D139N 0.23 tolerated(0.43) probably_damaging(0.969) TCGA-DK-AA6R-01 14 74180406 74180406 A T PNMA1 5'UTR 0.38 TCGA-DK-AA6R-01 14 74823805 74823805 C G VRTN Missense_Mutation p.R107G 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA6R-01 14 75513242 75513242 C T MLH3 Silent p.T1039T 0.23 TCGA-DK-AA6R-01 14 76349082 76349082 G T TTLL5 Missense_Mutation p.G1193C 0.13 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-DK-AA6R-01 14 76349083 76349083 G T TTLL5 Missense_Mutation p.G1193V 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-DK-AA6R-01 14 90778814 90778814 C G NRDE2 Missense_Mutation p.E161Q 0.18 tolerated(0.33) benign(0.027) TCGA-DK-AA6R-01 14 91927952 91927952 C A SMEK1 Splice_Site p.X709_splice 0.10 TCGA-DK-AA6R-01 14 96000017 96000017 T C GLRX5 5'Flank 0.44 TCGA-DK-AA6R-01 14 96875198 96875198 G T AK7 Missense_Mutation p.V140F 0.14 deleterious(0.01) benign(0.019) TCGA-DK-AA6R-01 15 26866499 26866499 G T GABRB3 Silent p.I141I 0.32 TCGA-DK-AA6R-01 15 30019030 30019030 C A TJP1 Nonsense_Mutation p.E756* 0.21 TCGA-DK-AA6R-01 15 38643844 38643844 G C SPRED1 Silent p.G438G 0.23 TCGA-DK-AA6R-01 15 40093859 40093859 C T GPR176 Missense_Mutation p.R341Q 0.24 deleterious(0.02) possibly_damaging(0.72) TCGA-DK-AA6R-01 15 49716576 49716576 A G FGF7 Missense_Mutation p.I28V 0.44 tolerated(0.72) benign(0) TCGA-DK-AA6R-01 15 56132916 56132916 A G NEDD4 Silent p.Y963Y 0.44 TCGA-DK-AA6R-01 15 63928186 63928186 C A HERC1 Missense_Mutation p.A4130S 0.15 probably_damaging(0.998) TCGA-DK-AA6R-01 15 75117829 75117829 C T LMAN1L Silent p.N488N 0.24 TCGA-DK-AA6R-01 15 86261372 86261372 C A AKAP13 Silent p.R1999R 0.11 TCGA-DK-AA6R-01 15 90276270 90276270 G A WDR93 Missense_Mutation p.G455E 0.28 tolerated(0.59) benign(0.409) TCGA-DK-AA6R-01 15 90616366 90616366 C T ZNF710 Missense_Mutation p.R508W 0.33 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6R-01 16 15833947 15833947 C T MYH11 Silent p.E993E 0.55 TCGA-DK-AA6R-01 16 15967392 15967392 G A FOPNL Missense_Mutation p.S135L 0.40 tolerated(0.07) benign(0.001) TCGA-DK-AA6R-01 16 18860575 18860575 C A SMG1 Missense_Mutation p.G1863C 0.25 deleterious(0) possibly_damaging(0.554) TCGA-DK-AA6R-01 16 18860576 18860576 C A SMG1 Silent p.V1862V 0.25 TCGA-DK-AA6R-01 16 20996495 20996495 C G DNAH3 Missense_Mutation p.K2523N 0.11 deleterious(0) probably_damaging(0.99) TCGA-DK-AA6R-01 16 21245065 21245065 A T ANKS4B Missense_Mutation p.T3S 0.18 tolerated(0.58) benign(0.061) TCGA-DK-AA6R-01 16 2233741 2233741 G C CASKIN1 Missense_Mutation p.T512R 0.21 probably_damaging(1) TCGA-DK-AA6R-01 16 23200794 23200794 G T SCNN1G Silent p.A140A 0.26 TCGA-DK-AA6R-01 16 2349500 2349500 C A ABCA3 Missense_Mutation p.V549F 0.66 deleterious(0) probably_damaging(0.933) TCGA-DK-AA6R-01 16 3900804 3900804 C A CREBBP Missense_Mutation p.G98C 0.10 probably_damaging(0.999) TCGA-DK-AA6R-01 16 3900805 3900805 C T CREBBP Silent p.Q97Q 0.10 TCGA-DK-AA6R-01 16 57689410 57689410 C T GPR56 Silent p.L290L 0.24 TCGA-DK-AA6R-01 16 67877244 67877244 G A THAP11 Missense_Mutation p.E263K 0.23 deleterious(0) probably_damaging(0.956) TCGA-DK-AA6R-01 16 70499039 70499039 C T FUK Missense_Mutation p.S82F 0.24 deleterious(0.01) benign(0.444) TCGA-DK-AA6R-01 16 70499044 70499044 G T FUK Missense_Mutation p.V84F 0.24 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6R-01 16 70499067 70499067 C T FUK Silent p.L91L 0.24 TCGA-DK-AA6R-01 16 70602336 70602336 A G SF3B3 Missense_Mutation p.T1035A 0.38 tolerated(1) benign(0.002) TCGA-DK-AA6R-01 16 90094077 90094077 A C GAS8 Missense_Mutation p.K13Q 0.12 tolerated(0.07) benign(0.047) TCGA-DK-AA6R-01 17 28706698 28706698 G A CPD Missense_Mutation p.E234K 0.38 tolerated(0.85) benign(0.108) TCGA-DK-AA6R-01 17 33680416 33680416 G A SLFN11 Missense_Mutation p.H621Y 0.39 tolerated(0.08) benign(0.037) TCGA-DK-AA6R-01 17 33953740 33953740 G A AP2B1 Missense_Mutation p.D273N 0.13 tolerated(0.36) benign(0.014) TCGA-DK-AA6R-01 17 35549233 35549233 C A ACACA Missense_Mutation p.R1405L 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-DK-AA6R-01 17 37872107 37872107 C T ERBB2 Silent p.F476F 0.16 TCGA-DK-AA6R-01 17 49075839 49075839 C A SPAG9 Missense_Mutation p.D602Y 0.19 deleterious(0.01) possibly_damaging(0.615) TCGA-DK-AA6R-01 17 54990864 54990864 C G TRIM25 Silent p.R162R 0.19 TCGA-DK-AA6R-01 17 54990865 54990865 C A TRIM25 Missense_Mutation p.R162L 0.22 deleterious(0) possibly_damaging(0.498) TCGA-DK-AA6R-01 17 54990867 54990867 A T TRIM25 Missense_Mutation p.N161K 0.23 deleterious(0) possibly_damaging(0.703) TCGA-DK-AA6R-01 17 61869788 61869788 G A DDX42 Missense_Mutation p.E80K 0.31 deleterious(0.02) benign(0.045) TCGA-DK-AA6R-01 17 67003941 67003941 C G ABCA9 Missense_Mutation p.G1132R 0.16 tolerated(0.35) benign(0.075) TCGA-DK-AA6R-01 17 67084354 67084354 C A ABCA6 Nonsense_Mutation p.E1218* 0.11 TCGA-DK-AA6R-01 17 67084355 67084355 C A ABCA6 Missense_Mutation p.M1217I 0.11 deleterious(0) benign(0.094) TCGA-DK-AA6R-01 17 7144969 7144969 C G GABARAP Silent p.R40R 0.31 TCGA-DK-AA6R-01 17 74382394 74382394 G A SPHK1 Missense_Mutation p.E172K 0.13 deleterious(0) probably_damaging(0.982) TCGA-DK-AA6R-01 17 74625231 74625231 G A ST6GALNAC1 Nonsense_Mutation p.Q232* 0.18 TCGA-DK-AA6R-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.64 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 17 77709205 77709205 C T ENPP7 Missense_Mutation p.R255W 0.51 deleterious(0.01) possibly_damaging(0.849) TCGA-DK-AA6R-01 17 79080679 79080679 A G BAIAP2 Missense_Mutation p.Y491C 0.13 deleterious(0.03) possibly_damaging(0.886) TCGA-DK-AA6R-01 17 8736293 8736293 C T PIK3R6 Missense_Mutation p.E239K 0.50 tolerated(0.05) benign(0.015) TCGA-DK-AA6R-01 17 9497562 9497562 G T WDR16 Missense_Mutation p.A154S 0.06 tolerated(0.89) benign(0.009) TCGA-DK-AA6R-01 18 28586904 28586904 G C DSC3 Missense_Mutation p.I619M 0.29 tolerated(0.28) benign(0.011) TCGA-DK-AA6R-01 18 33269216 33269216 G C GALNT1 Missense_Mutation p.D314H 0.18 deleterious(0) possibly_damaging(0.796) TCGA-DK-AA6R-01 18 60612351 60612351 G A PHLPP1 Silent p.A1057A 0.62 TCGA-DK-AA6R-01 19 10080577 10080577 G T COL5A3 Silent p.R1320R 0.14 TCGA-DK-AA6R-01 19 11832601 11832601 T C ZNF823 Missense_Mutation p.Y583C 0.28 deleterious(0.03) benign(0.029) TCGA-DK-AA6R-01 19 11888504 11888504 C G ZNF441 Missense_Mutation p.L28V 0.17 deleterious(0) probably_damaging(0.973) TCGA-DK-AA6R-01 19 12541817 12541817 T C ZNF443 Missense_Mutation p.E390G 0.16 deleterious(0.03) possibly_damaging(0.835) TCGA-DK-AA6R-01 19 12986962 12986962 C A DNASE2 Missense_Mutation p.V309L 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-DK-AA6R-01 19 12995588 12995588 C T KLF1 3'UTR 0.56 TCGA-DK-AA6R-01 19 13882984 13882984 C T MRI1 Silent p.I333I 0.20 TCGA-DK-AA6R-01 19 16515491 16515491 G C EPS15L1 Missense_Mutation p.Q446E 0.23 tolerated(0.06) possibly_damaging(0.878) TCGA-DK-AA6R-01 19 33870499 33870499 C G CEBPG Silent p.L118L 0.37 TCGA-DK-AA6R-01 19 36109042 36109042 G A HAUS5 Missense_Mutation p.A256T 0.40 tolerated(0.52) benign(0.019) TCGA-DK-AA6R-01 19 3619230 3619230 G A CACTIN Missense_Mutation p.R299C 0.15 deleterious(0) probably_damaging(0.98) TCGA-DK-AA6R-01 19 36278604 36278604 G A ARHGAP33 Missense_Mutation p.G885E 0.54 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DK-AA6R-01 19 39995920 39995920 C T DLL3 Missense_Mutation p.R308W 0.17 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 19 40541542 40541542 C T ZNF780B Silent p.Q408Q 0.43 TCGA-DK-AA6R-01 19 41265361 41265361 C G SNRPA Nonsense_Mutation p.S91* 0.21 TCGA-DK-AA6R-01 19 42507832 42507832 G A GRIK5 Missense_Mutation p.S756F 0.39 deleterious(0) possibly_damaging(0.879) TCGA-DK-AA6R-01 19 43586687 43586687 T G PSG2 Missense_Mutation p.H12P 0.22 tolerated(0.21) benign(0.099) TCGA-DK-AA6R-01 19 45316805 45316805 G C BCAM Missense_Mutation p.A238P 0.33 tolerated(0.11) possibly_damaging(0.822) TCGA-DK-AA6R-01 19 45368581 45368581 G T PVRL2 Missense_Mutation p.G48C 0.22 deleterious(0.02) possibly_damaging(0.834) TCGA-DK-AA6R-01 19 46997247 46997247 G A PNMAL2 Silent p.A492A 0.11 TCGA-DK-AA6R-01 19 4792804 4792804 G C FEM1A Missense_Mutation p.R313P 0.17 deleterious(0) probably_damaging(0.923) TCGA-DK-AA6R-01 19 47944593 47944593 C A SLC8A2 Splice_Site p.X623_splice 0.21 TCGA-DK-AA6R-01 19 49132045 49132045 C T SPHK2 Missense_Mutation p.S327F 0.12 deleterious(0.04) benign(0.004) TCGA-DK-AA6R-01 19 49496279 49496279 C G GYS1 Missense_Mutation p.E31Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6R-01 19 51875702 51875702 C G NKG7 Missense_Mutation p.E30Q 0.61 deleterious(0.03) possibly_damaging(0.481) TCGA-DK-AA6R-01 19 54313190 54313190 G A NLRP12 Silent p.L575L 0.39 TCGA-DK-AA6R-01 19 55286723 55286723 T C KIR2DL1 Silent p.H159H 0.55 TCGA-DK-AA6R-01 19 56226546 56226546 G T NLRP9 Silent p.S792S 0.17 TCGA-DK-AA6R-01 19 56226547 56226547 G T NLRP9 Missense_Mutation p.S792Y 0.21 tolerated(0.29) possibly_damaging(0.494) TCGA-DK-AA6R-01 19 57646260 57646260 C A ZIM3 3'UTR 0.26 TCGA-DK-AA6R-01 19 57955392 57955392 C T ZNF749 Silent p.L292L 0.25 TCGA-DK-AA6R-01 19 7965118 7965118 C G LRRC8E Missense_Mutation p.R571G 0.26 deleterious(0) possibly_damaging(0.682) TCGA-DK-AA6R-01 1 10166513 10166513 C T UBE4B Silent p.L356L 0.20 TCGA-DK-AA6R-01 1 120927176 120927176 C T FCGR1B Silent p.Q268Q 0.14 TCGA-DK-AA6R-01 1 150460379 150460379 C G TARS2 Missense_Mutation p.L38V 0.19 deleterious(0.04) possibly_damaging(0.566) TCGA-DK-AA6R-01 1 150461520 150461520 C G TARS2 Missense_Mutation p.S115C 0.18 tolerated(1) benign(0.019) TCGA-DK-AA6R-01 1 152192426 152192426 G T HRNR Missense_Mutation p.P560Q 0.17 unknown(0) TCGA-DK-AA6R-01 1 152770653 152770653 G T LCE1D 3'UTR 0.12 TCGA-DK-AA6R-01 1 15287351 15287351 G C KAZN Missense_Mutation p.R133T 0.18 deleterious(0.03) possibly_damaging(0.587) TCGA-DK-AA6R-01 1 155030453 155030453 G A ADAM15 Missense_Mutation p.G515R 0.40 tolerated(0.1) probably_damaging(0.993) TCGA-DK-AA6R-01 1 155279692 155279692 G T FDPS Missense_Mutation p.G38W 0.32 tolerated_low_confidence(0.05) benign(0.018) TCGA-DK-AA6R-01 1 158604372 158604372 A T SPTA1 Silent p.A1842A 0.30 TCGA-DK-AA6R-01 1 161128200 161128200 A T UFC1 Splice_Site p.X142_splice 0.22 TCGA-DK-AA6R-01 1 175996748 175996748 G A RFWD2 Silent p.F563F 0.27 TCGA-DK-AA6R-01 1 179012998 179012999 - GAG FAM20B In_Frame_Ins p.R6_V7insG 0.26 TCGA-DK-AA6R-01 1 196876037 196876037 T A CFHR4 Missense_Mutation p.N161K 0.16 tolerated(0.5) probably_damaging(0.928) TCGA-DK-AA6R-01 1 201843465 201843465 C T IPO9 Missense_Mutation p.A933V 0.06 tolerated(0.3) benign(0.008) TCGA-DK-AA6R-01 1 204214794 204214794 C A PLEKHA6 Missense_Mutation p.G661W 0.18 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6R-01 1 204214795 204214795 C A PLEKHA6 Missense_Mutation p.E660D 0.18 deleterious(0.02) possibly_damaging(0.615) TCGA-DK-AA6R-01 1 207870992 207870992 G A CR1L Missense_Mutation p.G336E 0.22 deleterious(0) probably_damaging(0.985) TCGA-DK-AA6R-01 1 208390464 208390464 G C PLXNA2 Missense_Mutation p.I268M 0.18 tolerated(0.31) benign(0.133) TCGA-DK-AA6R-01 1 209797343 209797343 C T LAMB3 Missense_Mutation p.R660Q 0.34 tolerated(0.54) benign(0.001) TCGA-DK-AA6R-01 1 209936213 209936213 C T TRAF3IP3 Silent p.T183T 0.25 TCGA-DK-AA6R-01 1 21177810 21177810 C A EIF4G3 Missense_Mutation p.G1188V 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-DK-AA6R-01 1 21177811 21177811 C A EIF4G3 Nonsense_Mutation p.G1188* 0.28 TCGA-DK-AA6R-01 1 215793831 215793831 G T KCTD3 Silent p.L773L 0.12 TCGA-DK-AA6R-01 1 215793832 215793832 G A KCTD3 Missense_Mutation p.A774T 0.12 tolerated_low_confidence(0.13) benign(0.099) TCGA-DK-AA6R-01 1 223286262 223286262 G C TLR5 Missense_Mutation p.L38V 0.53 deleterious(0.01) probably_damaging(0.937) TCGA-DK-AA6R-01 1 228362968 228362968 C T IBA57 Silent p.I275I 0.23 TCGA-DK-AA6R-01 1 228506762 228506762 G A OBSCN Missense_Mutation p.R5727H 0.38 benign(0.045) TCGA-DK-AA6R-01 1 235383181 235383181 C G ARID4B Missense_Mutation p.D504H 0.18 deleterious(0.01) benign(0.399) TCGA-DK-AA6R-01 1 23688497 23688497 C G ZNF436 Missense_Mutation p.A460P 0.26 tolerated(0.28) benign(0.047) TCGA-DK-AA6R-01 1 240978053 240978053 C G RGS7 Missense_Mutation p.D270H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-DK-AA6R-01 1 241667511 241667511 T A FH Missense_Mutation p.E313D 0.53 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6R-01 1 247582264 247582264 G T NLRP3 Silent p.T56T 0.40 TCGA-DK-AA6R-01 1 247588182 247588182 C G NLRP3 Missense_Mutation p.N479K 0.38 tolerated(0.2) probably_damaging(0.971) TCGA-DK-AA6R-01 1 248551081 248551081 C A OR2T6 Missense_Mutation p.P58T 0.21 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 1 27097665 27097665 C G ARID1A Nonsense_Mutation p.S1085* 0.31 TCGA-DK-AA6R-01 1 32503522 32503522 G A KHDRBS1 Missense_Mutation p.R331Q 0.34 deleterious(0) possibly_damaging(0.614) TCGA-DK-AA6R-01 1 33360296 33360296 G A TMEM54 3'UTR 0.25 TCGA-DK-AA6R-01 1 33959078 33959078 G T ZSCAN20 Missense_Mutation p.G579V 0.15 tolerated(0.12) benign(0.017) TCGA-DK-AA6R-01 1 39827252 39827252 C G MACF1 Missense_Mutation p.S2163C 0.44 possibly_damaging(0.882) TCGA-DK-AA6R-01 1 48688516 48688516 C A SLC5A9 Nonsense_Mutation p.Y36* 0.24 TCGA-DK-AA6R-01 1 52703692 52703692 G T ZFYVE9 Missense_Mutation p.E201D 0.41 deleterious_low_confidence(0) benign(0.032) TCGA-DK-AA6R-01 1 54661256 54661256 C T CYB5RL Missense_Mutation p.E12K 0.54 tolerated(0.1) benign(0.292) TCGA-DK-AA6R-01 1 57395039 57395039 G A C8B 3'UTR 0.17 TCGA-DK-AA6R-01 1 63008326 63008326 C G DOCK7 Missense_Mutation p.V969L 0.18 deleterious(0.02) benign(0.142) TCGA-DK-AA6R-01 1 66833713 66833713 G A PDE4B Missense_Mutation p.V543I 0.17 deleterious(0.05) probably_damaging(0.99) TCGA-DK-AA6R-01 1 87805743 87805743 C T LMO4 Missense_Mutation p.S116F 0.13 tolerated(0.71) benign(0.008) TCGA-DK-AA6R-01 20 10536902 10536902 G A SLX4IP Silent p.V17V 0.10 TCGA-DK-AA6R-01 20 10536903 10536903 G T SLX4IP Missense_Mutation p.D18Y 0.13 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 20 20484037 20484037 G A RALGAPA2 Silent p.S1722S 0.19 TCGA-DK-AA6R-01 20 23065234 23065234 G C CD93 Silent p.L532L 0.43 TCGA-DK-AA6R-01 20 30065713 30065713 G A REM1 Silent p.L141L 0.36 TCGA-DK-AA6R-01 20 3682111 3682111 G C SIGLEC1 Missense_Mutation p.S469C 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-DK-AA6R-01 20 42199320 42199320 G A SGK2 Missense_Mutation p.E202K 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6R-01 20 45771704 45771704 A G EYA2 Missense_Mutation p.T299A 0.22 tolerated(0.49) possibly_damaging(0.695) TCGA-DK-AA6R-01 20 45947822 45947822 G A AL031666.2 Missense_Mutation p.R153K 0.27 unknown(0) TCGA-DK-AA6R-01 20 47991119 47991119 C T KCNB1 Silent p.R326R 0.22 TCGA-DK-AA6R-01 20 51871953 51871953 G T TSHZ2 Missense_Mutation p.K652N 0.12 tolerated(0.39) benign(0.046) TCGA-DK-AA6R-01 20 51871954 51871954 G T TSHZ2 Nonsense_Mutation p.E653* 0.12 TCGA-DK-AA6R-01 20 55758785 55758785 G T BMP7 Missense_Mutation p.N317K 0.15 tolerated(0.25) benign(0.002) TCGA-DK-AA6R-01 20 58514335 58514335 C T PPP1R3D Missense_Mutation p.E218K 0.09 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6R-01 20 62046402 62046402 G T KCNQ2 Missense_Mutation p.A460D 0.17 deleterious(0.04) benign(0.197) TCGA-DK-AA6R-01 21 35467496 35467496 G C SLC5A3 5'UTR 0.16 TCGA-DK-AA6R-01 21 46641984 46641984 G A ADARB1 Missense_Mutation p.E700K 0.37 deleterious(0.01) possibly_damaging(0.874) TCGA-DK-AA6R-01 22 19776237 19776237 C A GNB1L Missense_Mutation p.A327S 0.29 tolerated_low_confidence(1) benign(0.002) TCGA-DK-AA6R-01 22 20229999 20229999 C A RTN4R Silent p.P219P 0.24 TCGA-DK-AA6R-01 22 26400707 26400707 C A MYO18B Missense_Mutation p.S2119Y 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-DK-AA6R-01 22 26400708 26400708 C A MYO18B Silent p.S2119S 0.18 TCGA-DK-AA6R-01 22 37452396 37452396 C T KCTD17 Missense_Mutation p.P119L 0.39 deleterious(0.02) benign(0.441) TCGA-DK-AA6R-01 22 44585085 44585085 G A PARVG Silent p.V113V 0.32 TCGA-DK-AA6R-01 22 45132680 45132680 G T PRR5 Silent p.S263S 0.25 TCGA-DK-AA6R-01 2 128015230 128015230 G A ERCC3 Missense_Mutation p.S764L 0.25 deleterious(0.03) benign(0.001) TCGA-DK-AA6R-01 2 133541294 133541294 G A NCKAP5 Silent p.T1030T 0.23 TCGA-DK-AA6R-01 2 138000052 138000052 A T THSD7B Missense_Mutation p.T726S 0.22 tolerated(0.23) benign(0.158) TCGA-DK-AA6R-01 2 153000369 153000369 C A STAM2 Missense_Mutation p.G226C 0.13 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 2 168067298 168067298 C A XIRP2 Silent p.R206R 0.10 TCGA-DK-AA6R-01 2 168103736 168103736 T - XIRP2 Frame_Shift_Del p.I1945Kfs*8 0.18 TCGA-DK-AA6R-01 2 171256779 171256779 C G MYO3B Missense_Mutation p.Q625E 0.12 tolerated(0.06) benign(0.098) TCGA-DK-AA6R-01 2 186670339 186670339 G A FSIP2 Missense_Mutation p.E5525K 0.25 benign(0.087) TCGA-DK-AA6R-01 2 186670945 186670945 C A FSIP2 Missense_Mutation p.L5727I 0.14 benign(0.005) TCGA-DK-AA6R-01 2 189931492 189931492 G C COL5A2 Missense_Mutation p.P473R 0.09 probably_damaging(0.995) TCGA-DK-AA6R-01 2 189931493 189931493 G T COL5A2 Missense_Mutation p.P473T 0.09 probably_damaging(0.993) TCGA-DK-AA6R-01 2 20101520 20101520 G T TTC32 Silent p.S32S 0.19 TCGA-DK-AA6R-01 2 201726121 201726121 C T CLK1 Missense_Mutation p.R119K 0.17 deleterious(0.03) benign(0.317) TCGA-DK-AA6R-01 2 217724744 217724744 C A TNP1 Missense_Mutation p.R5L 0.47 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DK-AA6R-01 2 219903124 219903124 C T CCDC108 Missense_Mutation p.M110I 0.21 tolerated_low_confidence(0.15) benign(0.053) TCGA-DK-AA6R-01 2 220097299 220097299 T G ANKZF1 Missense_Mutation p.F151C 0.11 tolerated(0.18) benign(0.002) TCGA-DK-AA6R-01 2 233428956 233428956 G A EIF4E2 Splice_Site p.X91_splice 0.38 TCGA-DK-AA6R-01 2 241709124 241709124 C A KIF1A Splice_Site p.X448_splice 0.29 TCGA-DK-AA6R-01 2 24443724 24443724 C G ITSN2 Intron 0.26 TCGA-DK-AA6R-01 2 27721122 27721122 G A GCKR Missense_Mutation p.E96K 0.35 tolerated(0.09) benign(0.075) TCGA-DK-AA6R-01 2 27803638 27803638 G A C2orf16 Missense_Mutation p.C1400Y 0.22 tolerated(0.83) benign(0.026) TCGA-DK-AA6R-01 2 32738163 32738163 A G BIRC6 Missense_Mutation p.S3504G 0.27 probably_damaging(0.992) TCGA-DK-AA6R-01 2 37873428 37873428 C T CDC42EP3 Silent p.P101P 0.33 TCGA-DK-AA6R-01 2 43452288 43452288 C A ZFP36L2 Missense_Mutation p.D219Y 0.40 deleterious(0) benign(0.432) TCGA-DK-AA6R-01 2 43452289 43452289 C A ZFP36L2 Silent p.A218A 0.43 TCGA-DK-AA6R-01 2 55407695 55407695 C A CLHC1 Missense_Mutation p.Q445H 0.26 deleterious(0.01) possibly_damaging(0.897) TCGA-DK-AA6R-01 2 65540700 65540700 G A SPRED2 Missense_Mutation p.R398W 0.06 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6R-01 2 73957857 73957857 C A TPRKB Nonsense_Mutation p.E91* 0.11 TCGA-DK-AA6R-01 2 74753879 74753879 C T AUP1 3'UTR 0.11 TCGA-DK-AA6R-01 2 85787982 85787982 C A GGCX Missense_Mutation p.R57L 0.19 deleterious(0) possibly_damaging(0.644) TCGA-DK-AA6R-01 2 89399446 89399446 C G IGKV1-16 Missense_Mutation p.G86A 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-DK-AA6R-01 2 89399447 89399447 C G IGKV1-16 Missense_Mutation p.G86R 0.19 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6R-01 2 90108883 90108883 G A IGKV6D-41 Missense_Mutation p.G50S 0.24 tolerated(1) benign(0.001) TCGA-DK-AA6R-01 2 90211994 90211994 C T IGKV3D-11 Missense_Mutation p.A29V 0.29 deleterious(0.05) benign(0.125) TCGA-DK-AA6R-01 2 95954325 95954325 G T PROM2 Missense_Mutation p.R810L 0.21 tolerated(0.08) possibly_damaging(0.755) TCGA-DK-AA6R-01 3 119196159 119196159 G T POGLUT1 Splice_Site p.X107_splice 0.30 TCGA-DK-AA6R-01 3 122646826 122646826 C T SEMA5B Missense_Mutation p.E275K 0.09 deleterious(0.05) possibly_damaging(0.769) TCGA-DK-AA6R-01 3 123022914 123022914 C T ADCY5 Missense_Mutation p.M853I 0.38 tolerated(0.16) benign(0.013) TCGA-DK-AA6R-01 3 130717142 130717142 G T ATP2C1 Missense_Mutation p.R833L 0.20 tolerated(0.14) benign(0.023) TCGA-DK-AA6R-01 3 148459080 148459080 C T AGTR1 Silent p.V86V 0.14 TCGA-DK-AA6R-01 3 148875203 148875203 C T HPS3 Missense_Mutation p.H526Y 0.19 deleterious(0) possibly_damaging(0.888) TCGA-DK-AA6R-01 3 155199221 155199221 C A PLCH1 Missense_Mutation p.D1540Y 0.36 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 3 15642659 15642659 C T HACL1 Missense_Mutation p.E42K 0.17 deleterious(0) possibly_damaging(0.876) TCGA-DK-AA6R-01 3 172165386 172165386 C T GHSR Intron 0.15 TCGA-DK-AA6R-01 3 179306767 179306767 G A MRPL47 Nonsense_Mutation p.R216* 0.12 TCGA-DK-AA6R-01 3 183551359 183551359 C A PARL Missense_Mutation p.A317S 0.13 tolerated(0.06) possibly_damaging(0.57) TCGA-DK-AA6R-01 3 183689497 183689497 G A ABCC5 Nonsense_Mutation p.Q539* 0.25 TCGA-DK-AA6R-01 3 183689544 183689550 GAAGCCC T ABCC5 In_Frame_Del p.R521_S523delinsN 0.24 TCGA-DK-AA6R-01 3 183689683 183689683 G A ABCC5 Missense_Mutation p.H477Y 0.30 tolerated(0.11) benign(0.042) TCGA-DK-AA6R-01 3 184293738 184293738 G A EPHB3 Missense_Mutation p.R326H 0.22 deleterious(0) probably_damaging(0.983) TCGA-DK-AA6R-01 3 184297360 184297360 G - EPHB3 Frame_Shift_Del p.V633Sfs*6 0.13 TCGA-DK-AA6R-01 3 185655646 185655646 C T TRA2B Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-AA6R-01 3 185978270 185978270 G T DGKG Missense_Mutation p.P461H 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 3 185978271 185978271 G T DGKG Missense_Mutation p.P461T 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 3 185978285 185978285 T C DGKG Missense_Mutation p.H456R 0.22 tolerated(0.08) benign(0.02) TCGA-DK-AA6R-01 3 186502607 186502607 T A EIF4A2 Intron 0.35 TCGA-DK-AA6R-01 3 196311180 196311181 GG - FBXO45 Frame_Shift_Del p.D285Rfs*8 0.23 TCGA-DK-AA6R-01 3 25637931 25637931 T C RARB Silent p.L391L 0.31 TCGA-DK-AA6R-01 3 38105339 38105339 G T DLEC1 Missense_Mutation p.D368Y 0.33 deleterious(0.03) possibly_damaging(0.476) TCGA-DK-AA6R-01 3 44815901 44815901 G T KIF15 Missense_Mutation p.V12L 0.26 tolerated_low_confidence(0.15) benign(0.022) TCGA-DK-AA6R-01 3 46414560 46414560 T C CCR5 Missense_Mutation p.I56T 0.25 tolerated(0.48) benign(0.261) TCGA-DK-AA6R-01 3 49898242 49898242 C T CAMKV Missense_Mutation p.D228N 0.35 tolerated_low_confidence(0.23) possibly_damaging(0.802) TCGA-DK-AA6R-01 3 49899221 49899221 C T CAMKV Intron 0.10 TCGA-DK-AA6R-01 3 50223322 50223322 C T SEMA3F Nonsense_Mutation p.Q530* 0.34 TCGA-DK-AA6R-01 3 50386113 50386113 C G NPRL2 Intron 0.23 TCGA-DK-AA6R-01 3 51971684 51971684 C T RRP9 Splice_Site p.X116_splice 0.28 TCGA-DK-AA6R-01 3 52582216 52582216 C A PBRM1 Nonsense_Mutation p.E1538* 0.32 TCGA-DK-AA6R-01 3 66432736 66432736 C T LRIG1 Missense_Mutation p.E860K 0.60 deleterious(0) probably_damaging(0.949) TCGA-DK-AA6R-01 3 9074399 9074403 TCCTC ACTT SRGAP3 Frame_Shift_Del p.M490Ifs*33 0.18 TCGA-DK-AA6R-01 4 138451723 138451723 C T PCDH18 Missense_Mutation p.S507N 0.32 tolerated(0.33) benign(0.007) TCGA-DK-AA6R-01 4 146041299 146041299 G A ABCE1 Missense_Mutation p.E380K 0.30 deleterious(0.03) possibly_damaging(0.899) TCGA-DK-AA6R-01 4 155156851 155156851 T G DCHS2 Missense_Mutation p.T2530P 0.35 tolerated(0.23) benign(0.124) TCGA-DK-AA6R-01 4 166408724 166408724 G A CPE Missense_Mutation p.E370K 0.41 deleterious(0) benign(0.046) TCGA-DK-AA6R-01 4 20728995 20728995 A T PACRGL 3'UTR 0.11 TCGA-DK-AA6R-01 4 2673851 2673851 G A FAM193A Missense_Mutation p.E404K 0.23 deleterious(0) possibly_damaging(0.848) TCGA-DK-AA6R-01 4 44724202 44724202 T A GNPDA2 Missense_Mutation p.N8I 0.23 deleterious_low_confidence(0) benign(0.177) TCGA-DK-AA6R-01 4 68964739 68964739 T A TMPRSS11F Missense_Mutation p.E10V 0.11 deleterious_low_confidence(0) benign(0.261) TCGA-DK-AA6R-01 4 76489333 76489333 A G C4orf26 Missense_Mutation p.R41G 0.15 deleterious_low_confidence(0.03) benign(0.291) TCGA-DK-AA6R-01 4 77476844 77476844 T C SHROOM3 Missense_Mutation p.L84P 0.18 deleterious(0) probably_damaging(0.964) TCGA-DK-AA6R-01 4 77660041 77660041 C G SHROOM3 Missense_Mutation p.P239A 0.11 tolerated(0.06) possibly_damaging(0.759) TCGA-DK-AA6R-01 4 79460531 79460531 C A FRAS1 Missense_Mutation p.F3794L 0.17 benign(0.082) TCGA-DK-AA6R-01 4 79460532 79460532 C A FRAS1 Missense_Mutation p.H3795N 0.16 benign(0.066) TCGA-DK-AA6R-01 4 89052292 89052292 G T ABCG2 Missense_Mutation p.T151N 0.19 deleterious(0.04) benign(0.232) TCGA-DK-AA6R-01 5 127681161 127681161 G A FBN2 Silent p.T1035T 0.40 TCGA-DK-AA6R-01 5 130797523 130797523 C A RAPGEF6 Missense_Mutation p.W913C 0.14 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 5 130797524 130797524 C A RAPGEF6 Missense_Mutation p.W913L 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6R-01 5 139193193 139193193 G A PSD2 Missense_Mutation p.R224H 0.80 tolerated(0.26) benign(0.002) TCGA-DK-AA6R-01 5 147470762 147470762 G A SPINK5 Missense_Mutation p.E213K 0.50 tolerated(0.14) benign(0.007) TCGA-DK-AA6R-01 5 148630007 148630007 C T ABLIM3 Intron 0.62 TCGA-DK-AA6R-01 5 158590024 158590024 A T RNF145 Nonsense_Mutation p.Y425* 0.47 TCGA-DK-AA6R-01 5 158710244 158710244 C G UBLCP1 Missense_Mutation p.L276V 0.11 tolerated(0.52) benign(0.001) TCGA-DK-AA6R-01 5 176778288 176778288 G T LMAN2 Silent p.V67V 0.32 TCGA-DK-AA6R-01 5 31553041 31553041 T C C5orf22 3'UTR 0.42 TCGA-DK-AA6R-01 5 33461331 33461331 T G TARS Missense_Mutation p.F527L 0.40 deleterious(0.03) benign(0.246) TCGA-DK-AA6R-01 5 36166632 36166632 C G SKP2 Missense_Mutation p.S135C 0.09 tolerated(0.06) benign(0.073) TCGA-DK-AA6R-01 5 40852482 40852482 C A CARD6 Missense_Mutation p.L350M 0.18 tolerated(0.13) possibly_damaging(0.615) TCGA-DK-AA6R-01 6 109993130 109993130 C T AK9 Missense_Mutation p.C108Y 0.17 deleterious(0.01) benign(0.106) TCGA-DK-AA6R-01 6 112017536 112017536 A G FYN Missense_Mutation p.L329P 0.56 deleterious(0.01) probably_damaging(1) TCGA-DK-AA6R-01 6 121577266 121577266 A G TBC1D32 Silent p.Y633Y 0.53 TCGA-DK-AA6R-01 6 132032137 132032137 G T CTAGE9 Silent p.T7T 0.23 TCGA-DK-AA6R-01 6 135254033 135254033 C A ALDH8A1 Missense_Mutation p.A244S 0.61 tolerated(0.07) possibly_damaging(0.874) TCGA-DK-AA6R-01 6 137329835 137329835 C A IL20RA Nonsense_Mutation p.E209* 0.39 TCGA-DK-AA6R-01 6 137329836 137329836 C A IL20RA Silent p.L208L 0.39 TCGA-DK-AA6R-01 6 152712465 152712465 C T SYNE1 Missense_Mutation p.E2651K 0.33 benign(0.008) TCGA-DK-AA6R-01 6 26107682 26107682 C A HIST1H1T 3'UTR 0.25 TCGA-DK-AA6R-01 6 26107683 26107683 C A HIST1H1T 3'UTR 0.24 TCGA-DK-AA6R-01 6 26158661 26158661 G T HIST1H2BD Silent p.S88S 0.23 TCGA-DK-AA6R-01 6 27100863 27100863 G T HIST1H2AG Missense_Mutation p.G5C 0.19 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA6R-01 6 27100864 27100864 G T HIST1H2AG Missense_Mutation p.G5V 0.18 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA6R-01 6 27782213 27782213 G C HIST1H2AJ Silent p.T102T 0.22 TCGA-DK-AA6R-01 6 29395099 29395099 G C OR11A1 Missense_Mutation p.S107C 0.24 tolerated(0.23) benign(0.059) TCGA-DK-AA6R-01 6 31696058 31696058 G A DDAH2 Silent p.V161V 0.09 TCGA-DK-AA6R-01 6 32012965 32012965 G C TNXB Missense_Mutation p.P11R 0.15 tolerated(0.3) probably_damaging(0.965) TCGA-DK-AA6R-01 6 32012966 32012966 G T TNXB Missense_Mutation p.P11T 0.15 tolerated(0.41) benign(0.26) TCGA-DK-AA6R-01 6 39158883 39158883 C A KCNK5 Missense_Mutation p.G428V 0.35 tolerated(0.56) benign(0.101) TCGA-DK-AA6R-01 6 39158884 39158884 C T KCNK5 Missense_Mutation p.G428S 0.33 tolerated(0.56) benign(0.002) TCGA-DK-AA6R-01 6 43013765 43013765 C A CUL7 Missense_Mutation p.G993W 0.30 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6R-01 6 43516071 43516071 C A XPO5 Nonsense_Mutation p.E663* 0.31 TCGA-DK-AA6R-01 6 47576922 47576922 C G CD2AP Missense_Mutation p.P566A 0.29 tolerated(0.11) benign(0.089) TCGA-DK-AA6R-01 6 56484621 56484621 C A DST Intron 0.20 TCGA-DK-AA6R-01 6 7232090 7232090 G T RREB1 Missense_Mutation p.R1253L 0.47 deleterious(0) possibly_damaging(0.688) TCGA-DK-AA6R-01 6 86325058 86325058 C T SYNCRIP Missense_Mutation p.D430N 0.20 tolerated(0.32) unknown(0) TCGA-DK-AA6R-01 6 87796147 87796147 G C CGA Missense_Mutation p.P32A 0.31 tolerated(0.21) probably_damaging(0.989) TCGA-DK-AA6R-01 6 87971349 87971349 A T ZNF292 Missense_Mutation p.I2668F 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-DK-AA6R-01 7 11485946 11485946 T - THSD7A Frame_Shift_Del p.S936Vfs*15 0.26 TCGA-DK-AA6R-01 7 116759719 116759719 C A ST7 Silent p.S113S 0.21 TCGA-DK-AA6R-01 7 117865032 117865032 T C ANKRD7 Missense_Mutation p.Y50H 0.13 tolerated(1) benign(0.003) TCGA-DK-AA6R-01 7 121650921 121650921 T C PTPRZ1 Silent p.Y607Y 0.51 TCGA-DK-AA6R-01 7 123302399 123302399 C T LMOD2 Silent p.D253D 0.13 TCGA-DK-AA6R-01 7 127014597 127014597 C T ZNF800 Missense_Mutation p.E265K 0.19 deleterious(0.01) benign(0.196) TCGA-DK-AA6R-01 7 134891917 134891917 C T WDR91 Silent p.Q183Q 0.19 TCGA-DK-AA6R-01 7 135328010 135328010 G C NUP205 Missense_Mutation p.Q1821H 0.19 tolerated(0.09) possibly_damaging(0.707) TCGA-DK-AA6R-01 7 149479348 149479348 G T SSPO RNA 0.25 TCGA-DK-AA6R-01 7 150440030 150440030 C T GIMAP5 Missense_Mutation p.A268V 0.19 tolerated(0.77) benign(0.009) TCGA-DK-AA6R-01 7 23313921 23313921 T A GPNMB 3'UTR 0.12 TCGA-DK-AA6R-01 7 23509794 23509794 G A IGF2BP3 5'UTR 0.20 TCGA-DK-AA6R-01 7 36927207 36927207 C T ELMO1 Missense_Mutation p.E558K 0.24 tolerated(0.05) benign(0.155) TCGA-DK-AA6R-01 7 72413373 72413373 G C POM121 Silent p.T682T 0.13 TCGA-DK-AA6R-01 7 92764375 92764375 C T SAMD9L Missense_Mutation p.V304I 0.16 tolerated(0.07) probably_damaging(1) TCGA-DK-AA6R-01 8 101117736 101117736 G T RGS22 Intron 0.16 TCGA-DK-AA6R-01 8 102731782 102731782 C A NCALD Nonsense_Mutation p.E26* 0.19 TCGA-DK-AA6R-01 8 10468278 10468278 C A RP1L1 Missense_Mutation p.R1110S 0.18 possibly_damaging(0.788) TCGA-DK-AA6R-01 8 10468279 10468279 C A RP1L1 Missense_Mutation p.R1110M 0.19 probably_damaging(0.926) TCGA-DK-AA6R-01 8 109796906 109796906 C A TMEM74 Missense_Mutation p.W141L 0.12 tolerated(0.72) benign(0.037) TCGA-DK-AA6R-01 8 109796907 109796907 A G TMEM74 Missense_Mutation p.W141R 0.12 tolerated(0.5) benign(0.141) TCGA-DK-AA6R-01 8 110100021 110100021 G T TRHR Missense_Mutation p.G94C 0.09 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 8 110100022 110100022 G T TRHR Missense_Mutation p.G94V 0.09 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 8 110454386 110454386 G C PKHD1L1 Missense_Mutation p.G1452A 0.12 deleterious(0) benign(0.406) TCGA-DK-AA6R-01 8 113236935 113236935 G A CSMD3 3'UTR 0.05 TCGA-DK-AA6R-01 8 113317063 113317063 T G CSMD3 Missense_Mutation p.K2718T 0.15 tolerated(0.07) possibly_damaging(0.828) TCGA-DK-AA6R-01 8 12043918 12043918 C A FAM86B1 Missense_Mutation p.D195Y 0.11 deleterious(0.01) benign(0.216) TCGA-DK-AA6R-01 8 139164495 139164495 G C FAM135B Missense_Mutation p.S741R 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6R-01 8 139715555 139715555 A G COL22A1 Silent p.P851P 0.32 TCGA-DK-AA6R-01 8 141711099 141711099 C A PTK2 Missense_Mutation p.R797L 0.15 tolerated(0.08) benign(0.022) TCGA-DK-AA6R-01 8 146107046 146107046 C T ZNF250 Missense_Mutation p.G513R 0.38 deleterious(0.03) possibly_damaging(0.715) TCGA-DK-AA6R-01 8 19682419 19682419 C T INTS10 Silent p.T314T 0.25 TCGA-DK-AA6R-01 8 42587518 42587518 C T CHRNB3 Silent p.Y356Y 0.20 TCGA-DK-AA6R-01 8 59409257 59409257 C A CYP7A1 Missense_Mutation p.D272Y 0.11 deleterious(0) probably_damaging(0.956) TCGA-DK-AA6R-01 8 61654595 61654595 C T CHD7 Nonsense_Mutation p.Q202* 0.31 TCGA-DK-AA6R-01 8 64100093 64100093 C G YTHDF3 Silent p.V507V 0.16 TCGA-DK-AA6R-01 8 71075735 71075735 G A NCOA2 Missense_Mutation p.S266L 0.16 deleterious(0.01) benign(0.079) TCGA-DK-AA6R-01 8 74464345 74464345 C T STAU2 Missense_Mutation p.E478K 0.14 deleterious(0.01) possibly_damaging(0.524) TCGA-DK-AA6R-01 8 74888564 74888564 C T TMEM70 Silent p.L16L 0.17 TCGA-DK-AA6R-01 8 76452246 76452246 A G HNF4G Missense_Mutation p.S7G 0.15 tolerated(0.21) benign(0.005) TCGA-DK-AA6R-01 8 87638222 87638222 C T CNGB3 Missense_Mutation p.D523N 0.36 tolerated(0.28) benign(0.068) TCGA-DK-AA6R-01 8 95504899 95504899 C T KIAA1429 Missense_Mutation p.E1597K 0.14 tolerated(0.14) probably_damaging(0.997) TCGA-DK-AA6R-01 9 101751489 101751489 G T COL15A1 Missense_Mutation p.E251D 0.14 tolerated(0.2) benign(0.002) TCGA-DK-AA6R-01 9 101984588 101984588 G T SEC61B 5'UTR 0.22 TCGA-DK-AA6R-01 9 107361479 107361479 G A OR13C5 Silent p.C72C 0.18 TCGA-DK-AA6R-01 9 119976784 119976784 G T ASTN2 Missense_Mutation p.L290M 0.26 tolerated_low_confidence(0.06) unknown(0) TCGA-DK-AA6R-01 9 127998900 127998900 C G HSPA5 Missense_Mutation p.E646Q 0.20 tolerated_low_confidence(0.06) benign(0.004) TCGA-DK-AA6R-01 9 131219716 131219716 G A ODF2 Missense_Mutation p.R11K 0.23 tolerated_low_confidence(1) benign(0.009) TCGA-DK-AA6R-01 9 131219717 131219717 G T ODF2 Splice_Site p.X11_splice 0.23 TCGA-DK-AA6R-01 9 131513538 131513538 C A ZER1 Missense_Mutation p.D350Y 0.17 deleterious(0) possibly_damaging(0.656) TCGA-DK-AA6R-01 9 135374919 135374919 G T C9orf171 Missense_Mutation p.Q188H 0.19 deleterious(0.03) benign(0.046) TCGA-DK-AA6R-01 9 135374920 135374920 G T C9orf171 Missense_Mutation p.D189Y 0.20 deleterious(0) probably_damaging(0.957) TCGA-DK-AA6R-01 9 137987778 137987778 G C OLFM1 Missense_Mutation p.E105D 0.28 tolerated(0.42) benign(0.009) TCGA-DK-AA6R-01 9 140059498 140059498 C A GRIN1 Intron 0.20 TCGA-DK-AA6R-01 9 19326156 19326156 C T DENND4C Missense_Mutation p.P695L 0.48 deleterious(0.03) benign(0.072) TCGA-DK-AA6R-01 9 35091443 35091443 C T PIGO Missense_Mutation p.R814K 0.24 tolerated(0.53) benign(0.002) TCGA-DK-AA6R-01 9 71098904 71098904 G T PGM5 Silent p.V473V 0.12 TCGA-DK-AA6R-01 9 71098905 71098905 G T PGM5 Missense_Mutation p.A474S 0.13 tolerated(0.41) benign(0.066) TCGA-DK-AA6R-01 9 73235173 73235173 C A TRPM3 Nonsense_Mutation p.E638* 0.47 TCGA-DK-AA6R-01 9 84608858 84608858 G A SPATA31D1 Missense_Mutation p.R1158K 0.17 tolerated(0.66) benign(0.088) TCGA-DK-AA6R-01 9 84608859 84608859 G T SPATA31D1 Missense_Mutation p.R1158S 0.17 tolerated(0.67) benign(0.025) TCGA-DK-AA6R-01 X 117570746 117570746 C G WDR44 Missense_Mutation p.Q645E 0.36 deleterious(0) possibly_damaging(0.771) TCGA-DK-AA6R-01 X 119670868 119670868 G A CUL4B Missense_Mutation p.P672S 0.34 tolerated(0.22) benign(0.01) TCGA-DK-AA6R-01 X 150345223 150345224 CT G GPR50 Frame_Shift_Del p.Y11Mfs*17 0.14 TCGA-DK-AA6R-01 X 151818288 151818288 C A GABRQ Missense_Mutation p.Q232K 0.23 deleterious(0) possibly_damaging(0.549) TCGA-DK-AA6R-01 X 153134151 153134151 C A L1CAM Missense_Mutation p.D471Y 0.57 deleterious(0.01) probably_damaging(0.995) TCGA-DK-AA6R-01 X 153134152 153134152 C A L1CAM Missense_Mutation p.Q470H 0.57 tolerated(0.08) possibly_damaging(0.701) TCGA-DK-AA6R-01 X 26157112 26157112 G T MAGEB18 Missense_Mutation p.G4C 0.27 deleterious(0) probably_damaging(1) TCGA-DK-AA6R-01 X 52893894 52893894 G C XAGE3 Missense_Mutation p.Q75E 0.83 tolerated(0.43) benign(0.138) TCGA-DK-AA6R-01 X 77528397 77528397 G A CYSLTR1 Silent p.L283L 0.28 TCGA-DK-AA6R-01 X 99551499 99551499 G C PCDH19 Missense_Mutation p.L1075V 0.40 tolerated_low_confidence(0.59) benign(0.002) TCGA-DK-AA6S-01 10 105921764 105921764 C T WDR96 Missense_Mutation p.M1123I 0.11 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6S-01 10 124697643 124697643 C T C10orf88 Silent p.S227S 0.52 TCGA-DK-AA6S-01 10 25887392 25887392 C G GPR158 Nonsense_Mutation p.S946* 0.36 TCGA-DK-AA6S-01 10 27389128 27389128 C G ANKRD26 Missense_Mutation p.R43P 0.37 deleterious(0.02) benign(0.197) TCGA-DK-AA6S-01 10 28899735 28899735 C T WAC Nonsense_Mutation p.Q425* 0.26 TCGA-DK-AA6S-01 10 28900789 28900789 C T WAC Nonsense_Mutation p.Q459* 0.30 TCGA-DK-AA6S-01 10 3175395 3175395 A G PFKP Silent p.R637R 0.08 TCGA-DK-AA6S-01 10 32115305 32115305 C T ARHGAP12 Nonsense_Mutation p.W486* 0.18 TCGA-DK-AA6S-01 10 62038838 62038838 C G ANK3 Missense_Mutation p.Q95H 0.45 benign(0.008) TCGA-DK-AA6S-01 10 6268181 6268181 C T PFKFB3 Silent p.L456L 0.23 TCGA-DK-AA6S-01 10 6525400 6525400 A T PRKCQ Splice_Site p.X393_splice 0.33 TCGA-DK-AA6S-01 10 71647228 71647228 G C COL13A1 Missense_Mutation p.R168T 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-DK-AA6S-01 10 7765524 7765524 G T ITIH2 Missense_Mutation p.M326I 0.31 tolerated(0.32) possibly_damaging(0.842) TCGA-DK-AA6S-01 10 79601696 79601696 G C DLG5 Silent p.L460L 0.38 TCGA-DK-AA6S-01 10 95116476 95116476 C T MYOF Missense_Mutation p.E1084K 0.47 tolerated(0.12) benign(0.06) TCGA-DK-AA6S-01 10 95116498 95116498 C G MYOF Missense_Mutation p.W1076C 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.38 TCGA-DK-AA6S-01 10 97101150 97101150 C T SORBS1 Silent p.E854E 0.49 TCGA-DK-AA6S-01 10 97625981 97625981 G A ENTPD1 Silent p.L470L 0.59 TCGA-DK-AA6S-01 10 99343453 99343453 G C ANKRD2 Missense_Mutation p.E352Q 0.59 tolerated_low_confidence(0.1) benign(0.011) TCGA-DK-AA6S-01 11 100863265 100863265 G A TMEM133 Missense_Mutation p.A76T 0.26 tolerated_low_confidence(0.14) possibly_damaging(0.682) TCGA-DK-AA6S-01 11 103086497 103086497 G A DYNC2H1 Silent p.L2914L 0.33 TCGA-DK-AA6S-01 11 110450484 110450484 C G ARHGAP20 Missense_Mutation p.E1062D 0.30 deleterious_low_confidence(0) benign(0.013) TCGA-DK-AA6S-01 11 111636059 111636059 C T PPP2R1B Missense_Mutation p.G55E 0.30 deleterious(0.01) probably_damaging(0.923) TCGA-DK-AA6S-01 11 111731298 111731298 G A ALG9 Silent p.L8L 0.16 TCGA-DK-AA6S-01 11 112089183 112089183 C A BCO2 3'UTR 0.23 TCGA-DK-AA6S-01 11 117053477 117053477 C T SIDT2 Silent p.I219I 0.31 TCGA-DK-AA6S-01 11 117263209 117263209 C G CEP164 Intron 0.33 TCGA-DK-AA6S-01 11 118244373 118244373 C G UBE4A Missense_Mutation p.I370M 0.37 tolerated(0.19) possibly_damaging(0.508) TCGA-DK-AA6S-01 11 118245786 118245786 C G UBE4A Nonsense_Mutation p.S438* 0.23 TCGA-DK-AA6S-01 11 118373660 118373660 C T KMT2A Silent p.I2351I 0.19 TCGA-DK-AA6S-01 11 118984862 118984862 G A C2CD2L Missense_Mutation p.D567N 0.21 tolerated(0.32) benign(0.047) TCGA-DK-AA6S-01 11 126146357 126146357 G A FOXRED1 Missense_Mutation p.G347E 0.37 deleterious(0) possibly_damaging(0.896) TCGA-DK-AA6S-01 11 133791102 133791102 C T IGSF9B Missense_Mutation p.E840K 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-DK-AA6S-01 11 133791154 133791154 C T IGSF9B Silent p.K822K 0.25 TCGA-DK-AA6S-01 11 14157022 14157022 C T RNA5SP332 3'Flank 0.05 TCGA-DK-AA6S-01 11 1467115 1467115 G A BRSK2 Missense_Mutation p.E448K 0.38 tolerated(0.08) possibly_damaging(0.562) TCGA-DK-AA6S-01 11 17169139 17169139 G A PIK3C2A Silent p.N495N 0.30 TCGA-DK-AA6S-01 11 20177982 20177982 C G DBX1 Missense_Mutation p.Q309H 0.38 deleterious(0) possibly_damaging(0.904) TCGA-DK-AA6S-01 11 40135839 40135839 G T LRRC4C 3'UTR 0.44 TCGA-DK-AA6S-01 11 44636880 44636880 G T CD82 Missense_Mutation p.R132L 0.15 tolerated(0.28) benign(0.016) TCGA-DK-AA6S-01 11 45671749 45671749 G A CHST1 Missense_Mutation p.S242L 0.41 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 11 47199592 47199592 C A PACSIN3 Nonsense_Mutation p.E389* 0.27 TCGA-DK-AA6S-01 11 47436205 47436205 C G SLC39A13 Intron 0.40 TCGA-DK-AA6S-01 11 5255669 5255669 C G HBD 5'UTR 0.18 TCGA-DK-AA6S-01 11 55594868 55594868 C G OR5L2 Silent p.P58P 0.34 TCGA-DK-AA6S-01 11 58972353 58972353 G A DTX4 Missense_Mutation p.E611K 0.38 deleterious(0) probably_damaging(0.959) TCGA-DK-AA6S-01 11 60184402 60184402 G A MS4A14 Nonsense_Mutation p.W687* 0.32 TCGA-DK-AA6S-01 11 61732326 61732326 T C FTH1 Missense_Mutation p.Q142R 0.07 deleterious(0.02) probably_damaging(0.977) TCGA-DK-AA6S-01 11 624604 624604 G A CDHR5 Missense_Mutation p.R72W 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-DK-AA6S-01 11 62490138 62490138 C G HNRNPUL2 Missense_Mutation p.E344Q 0.22 tolerated(0.1) benign(0.008) TCGA-DK-AA6S-01 11 62491392 62491392 C G HNRNPUL2 Missense_Mutation p.D249H 0.35 deleterious(0) probably_damaging(0.97) TCGA-DK-AA6S-01 11 62491893 62491893 C T HNRNPUL2 Missense_Mutation p.D182N 0.29 tolerated(0.18) benign(0.01) TCGA-DK-AA6S-01 11 66332278 66332278 C T CTSF Splice_Site p.X389_splice 0.43 TCGA-DK-AA6S-01 11 67059160 67059160 G A ANKRD13D Missense_Mutation p.G162S 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 11 67812527 67812527 G A TCIRG1 Missense_Mutation p.V375M 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-DK-AA6S-01 11 68153879 68153879 G A LRP5 Missense_Mutation p.D371N 0.42 tolerated(0.36) benign(0.003) TCGA-DK-AA6S-01 11 6913048 6913048 C T OR2D2 Missense_Mutation p.M228I 0.31 tolerated(1) benign(0.008) TCGA-DK-AA6S-01 11 70172719 70172719 C T PPFIA1 Missense_Mutation p.S242F 0.20 deleterious(0) benign(0.361) TCGA-DK-AA6S-01 11 70255949 70255949 G C CTTN Silent p.L58L 0.28 TCGA-DK-AA6S-01 11 77921514 77921514 T A USP35 Silent p.A871A 0.24 TCGA-DK-AA6S-01 11 82535895 82535895 G T PRCP 3'UTR 0.33 TCGA-DK-AA6S-01 11 87020647 87020647 C G TMEM135 Missense_Mutation p.S290C 0.05 deleterious(0) possibly_damaging(0.879) TCGA-DK-AA6S-01 11 9042730 9042730 G C SCUBE2 Missense_Mutation p.I926M 0.12 tolerated(0.1) probably_damaging(0.975) TCGA-DK-AA6S-01 11 92531916 92531916 G A FAT3 Missense_Mutation p.E1913K 0.11 benign(0.044) TCGA-DK-AA6S-01 12 100594632 100594632 G A ACTR6 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-DK-AA6S-01 12 104033919 104033919 G C STAB2 Missense_Mutation p.E309Q 0.26 tolerated(0.17) benign(0.022) TCGA-DK-AA6S-01 12 107395695 107395695 G C CRY1 Missense_Mutation p.L148V 0.26 deleterious(0.02) possibly_damaging(0.51) TCGA-DK-AA6S-01 12 109182061 109182061 C T SSH1 Silent p.V951V 0.23 TCGA-DK-AA6S-01 12 109959263 109959263 G A UBE3B Silent p.E757E 0.25 TCGA-DK-AA6S-01 12 110780045 110780045 G C ATP2A2 Missense_Mutation p.V704L 0.25 deleterious(0) probably_damaging(0.965) TCGA-DK-AA6S-01 12 111885592 111885592 C T SH2B3 Missense_Mutation p.R457W 0.19 deleterious(0) probably_damaging(0.987) TCGA-DK-AA6S-01 12 113357332 113357332 G C OAS1 Missense_Mutation p.R360T 0.23 deleterious(0.03) benign(0.003) TCGA-DK-AA6S-01 12 114839668 114839668 C T TBX5 Missense_Mutation p.E69K 0.30 tolerated(0.21) benign(0.009) TCGA-DK-AA6S-01 12 120106173 120106173 G A PRKAB1 Missense_Mutation p.E42K 0.29 tolerated(0.13) benign(0.181) TCGA-DK-AA6S-01 12 121880471 121880471 C T KDM2B Missense_Mutation p.E925K 0.37 tolerated_low_confidence(0.06) possibly_damaging(0.738) TCGA-DK-AA6S-01 12 122692830 122692830 C T DIABLO 3'UTR 0.33 TCGA-DK-AA6S-01 12 122692957 122692957 C G DIABLO Missense_Mutation p.E231Q 0.31 tolerated(0.44) benign(0.029) TCGA-DK-AA6S-01 12 122831943 122831943 C T CLIP1 Silent p.Q495Q 0.29 TCGA-DK-AA6S-01 12 122839757 122839757 C G CLIP1 Missense_Mutation p.E370Q 0.41 deleterious(0) probably_damaging(0.985) TCGA-DK-AA6S-01 12 123286340 123286340 C T CCDC62 Silent p.L549L 0.34 TCGA-DK-AA6S-01 12 124171441 124171441 G C TCTN2 Missense_Mutation p.G208A 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-DK-AA6S-01 12 133306381 133306381 C T ANKLE2 Silent p.R789R 0.23 TCGA-DK-AA6S-01 12 133306396 133306396 C T ANKLE2 Silent p.G784G 0.24 TCGA-DK-AA6S-01 12 133306655 133306655 C G ANKLE2 Missense_Mutation p.R698T 0.27 deleterious(0.02) possibly_damaging(0.649) TCGA-DK-AA6S-01 12 16516931 16516931 C G MGST1 Missense_Mutation p.L142V 0.27 tolerated(0.21) benign(0.002) TCGA-DK-AA6S-01 12 26839562 26839562 C T ITPR2 Missense_Mutation p.D334N 0.27 tolerated(0.16) benign(0.052) TCGA-DK-AA6S-01 12 31648779 31648779 C T DENND5B Missense_Mutation p.E68K 0.54 tolerated(0.28) possibly_damaging(0.689) TCGA-DK-AA6S-01 12 45742380 45742380 C T ANO6 Missense_Mutation p.S259F 0.37 deleterious(0) possibly_damaging(0.836) TCGA-DK-AA6S-01 12 46245275 46245275 G T ARID2 Silent p.G1123G 0.35 TCGA-DK-AA6S-01 12 46754860 46754860 C A SLC38A2 3'UTR 0.24 TCGA-DK-AA6S-01 12 4736116 4736116 G C AKAP3 Missense_Mutation p.S651C 0.15 deleterious(0.03) benign(0.056) TCGA-DK-AA6S-01 12 48389067 48389067 G T COL2A1 Missense_Mutation p.P245T 0.22 unknown(0) TCGA-DK-AA6S-01 12 49087445 49087445 G A CCNT1 Missense_Mutation p.H518Y 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-DK-AA6S-01 12 49425449 49425449 G A KMT2D Nonsense_Mutation p.Q4347* 0.25 TCGA-DK-AA6S-01 12 49426069 49426069 G A KMT2D Missense_Mutation p.S4140F 0.21 unknown(0) TCGA-DK-AA6S-01 12 49426075 49426075 G T KMT2D Missense_Mutation p.S4138Y 0.22 unknown(0) TCGA-DK-AA6S-01 12 50483729 50483729 G C SMARCD1 Silent p.V278V 0.31 TCGA-DK-AA6S-01 12 53509190 53509190 G C SOAT2 Missense_Mutation p.D154H 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 12 56493443 56493443 G C ERBB3 Missense_Mutation p.D951H 0.22 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 12 56536120 56536120 G C ESYT1 Missense_Mutation p.E892Q 0.36 tolerated(0.81) benign(0.037) TCGA-DK-AA6S-01 12 57113937 57113937 T A NACA Silent p.V459V 0.29 TCGA-DK-AA6S-01 12 57920759 57920759 C G MBD6 Missense_Mutation p.L611V 0.05 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA6S-01 12 58000957 58000957 G T DTX3 Missense_Mutation p.G104V 0.28 tolerated_low_confidence(0.23) possibly_damaging(0.697) TCGA-DK-AA6S-01 12 58125209 58125209 C A AGAP2 Missense_Mutation p.W695C 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 12 59283823 59283823 G A LRIG3 Missense_Mutation p.S205L 0.38 deleterious(0.02) possibly_damaging(0.555) TCGA-DK-AA6S-01 12 64055241 64055241 G C DPY19L2 Missense_Mutation p.F157L 0.36 deleterious(0.02) possibly_damaging(0.617) TCGA-DK-AA6S-01 12 6664905 6664905 C G IFFO1 Silent p.R97R 0.31 TCGA-DK-AA6S-01 12 6664956 6664956 C G IFFO1 Silent p.L80L 0.29 TCGA-DK-AA6S-01 12 6666527 6666527 C G NOP2 Missense_Mutation p.E724Q 0.19 tolerated_low_confidence(0.13) benign(0.029) TCGA-DK-AA6S-01 12 6666547 6666547 C G NOP2 Missense_Mutation p.G717A 0.19 tolerated_low_confidence(0.64) benign(0.013) TCGA-DK-AA6S-01 12 6670223 6670223 C T NOP2 Silent p.K440K 0.30 TCGA-DK-AA6S-01 12 68688945 68688945 G C MDM1 3'UTR 0.22 TCGA-DK-AA6S-01 12 7044722 7044722 C T ATN1 Missense_Mutation p.R98W 0.23 probably_damaging(0.994) TCGA-DK-AA6S-01 12 7044876 7044876 C T ATN1 Missense_Mutation p.S149F 0.34 probably_damaging(0.997) TCGA-DK-AA6S-01 12 7045048 7045048 C G ATN1 Missense_Mutation p.F206L 0.41 probably_damaging(0.914) TCGA-DK-AA6S-01 12 7045116 7045116 C G ATN1 Missense_Mutation p.S229C 0.38 benign(0.21) TCGA-DK-AA6S-01 12 7526198 7526198 C T CD163L1 Missense_Mutation p.E1150K 0.08 tolerated(0.17) benign(0.223) TCGA-DK-AA6S-01 12 7637997 7637997 C T CD163 Missense_Mutation p.R825K 0.40 deleterious(0.03) benign(0.033) TCGA-DK-AA6S-01 12 8212248 8212248 G A C3AR1 Silent p.L178L 0.36 TCGA-DK-AA6S-01 12 8212483 8212483 G C C3AR1 Missense_Mutation p.S100C 0.42 deleterious(0.02) possibly_damaging(0.617) TCGA-DK-AA6S-01 12 85434361 85434361 G A LRRIQ1 Missense_Mutation p.E76K 0.31 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6S-01 12 94072788 94072788 C T CRADD Missense_Mutation p.P80S 0.24 tolerated(0.44) probably_damaging(0.996) TCGA-DK-AA6S-01 12 94975729 94975729 G A TMCC3 Missense_Mutation p.H222Y 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6S-01 13 111353820 111353820 C G CARS2 Missense_Mutation p.D120H 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 13 20797041 20797041 A C GJB6 Missense_Mutation p.I193M 0.35 tolerated(0.08) possibly_damaging(0.9) TCGA-DK-AA6S-01 13 20797072 20797072 G C GJB6 Missense_Mutation p.S183C 0.30 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 13 24455840 24455840 C G MIPEP Missense_Mutation p.E150D 0.33 deleterious(0) possibly_damaging(0.608) TCGA-DK-AA6S-01 13 25671192 25671192 G C PABPC3 Missense_Mutation p.D286H 0.29 deleterious(0) benign(0.087) TCGA-DK-AA6S-01 13 32954179 32954179 A C BRCA2 Silent p.P3051P 0.08 TCGA-DK-AA6S-01 13 37014232 37014232 T A CCNA1 Missense_Mutation p.F337Y 0.31 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 13 37605947 37605947 C G SUPT20H Missense_Mutation p.D265H 0.24 deleterious(0.02) possibly_damaging(0.894) TCGA-DK-AA6S-01 13 76378629 76378629 G A LMO7 Missense_Mutation p.R56K 0.31 deleterious(0.03) possibly_damaging(0.826) TCGA-DK-AA6S-01 13 78318418 78318418 G T SLAIN1 Missense_Mutation p.G92V 0.33 deleterious(0.01) unknown(0) TCGA-DK-AA6S-01 13 96665587 96665587 G A UGGT2 Silent p.L212L 0.27 TCGA-DK-AA6S-01 13 99134532 99134532 G A STK24 Missense_Mutation p.S118F 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 13 99853702 99853702 G A UBAC2 Intron 0.33 TCGA-DK-AA6S-01 14 102489186 102489186 G A DYNC1H1 Missense_Mutation p.R2869Q 0.38 possibly_damaging(0.6) TCGA-DK-AA6S-01 14 105407476 105407476 C T AHNAK2 Missense_Mutation p.R4771Q 0.48 benign(0.026) TCGA-DK-AA6S-01 14 106586406 106586406 C G IGHV3-13 Missense_Mutation p.G27R 0.42 deleterious_low_confidence(0.01) probably_damaging(0.967) TCGA-DK-AA6S-01 14 19553848 19553848 C G POTEG Missense_Mutation p.H144Q 0.19 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 14 21968750 21968750 G C METTL3 Silent p.P397P 0.41 TCGA-DK-AA6S-01 14 21969223 21969223 G C METTL3 Missense_Mutation p.F316L 0.41 deleterious(0) possibly_damaging(0.757) TCGA-DK-AA6S-01 14 53251366 53251366 C T GNPNAT1 Translation_Start_Site p.M1? 0.55 deleterious(0.02) benign(0.045) TCGA-DK-AA6S-01 14 64469819 64469819 G C SYNE2 Missense_Mutation p.D1390H 0.49 probably_damaging(0.98) TCGA-DK-AA6S-01 14 68200510 68200510 C G RDH12 Missense_Mutation p.T299R 0.52 deleterious(0.04) benign(0.432) TCGA-DK-AA6S-01 14 72138245 72138245 G A SIPA1L1 Missense_Mutation p.E889K 0.46 deleterious(0.01) benign(0.152) TCGA-DK-AA6S-01 14 91282640 91282640 C T TTC7B 5'UTR 0.44 TCGA-DK-AA6S-01 14 91366570 91366570 G C RPS6KA5 Missense_Mutation p.Q421E 0.44 tolerated(0.09) benign(0.013) TCGA-DK-AA6S-01 14 91701130 91701130 G T GPR68 Missense_Mutation p.H89N 0.50 tolerated(0.07) benign(0.063) TCGA-DK-AA6S-01 14 94060055 94060055 C G UNC79 Missense_Mutation p.S844C 0.51 tolerated(0.15) benign(0.031) TCGA-DK-AA6S-01 14 96730302 96730302 G T BDKRB1 Nonsense_Mutation p.E95* 0.46 TCGA-DK-AA6S-01 15 101825954 101825954 G A SNRPA1 Missense_Mutation p.P198S 0.51 tolerated(0.11) benign(0.015) TCGA-DK-AA6S-01 15 23811772 23811772 G C MKRN3 Missense_Mutation p.Q281H 0.33 deleterious(0) probably_damaging(0.991) TCGA-DK-AA6S-01 15 25488659 25488659 G A SNORD115-40 5'Flank 0.16 TCGA-DK-AA6S-01 15 35084757 35084757 G A ACTC1 Silent p.D156D 0.31 TCGA-DK-AA6S-01 15 40915445 40915446 GA - CASC5 Frame_Shift_Del p.S1022Cfs*8 0.30 TCGA-DK-AA6S-01 15 42028647 42028647 G A MGA Silent p.V1395V 0.24 TCGA-DK-AA6S-01 15 43044920 43044920 C A TTBK2 Nonsense_Mutation p.E842* 0.33 TCGA-DK-AA6S-01 15 43044974 43044974 C G TTBK2 Missense_Mutation p.D824H 0.34 tolerated_low_confidence(0.06) benign(0.004) TCGA-DK-AA6S-01 15 43620740 43620740 C G LCMT2 Missense_Mutation p.E650Q 0.34 deleterious(0.01) probably_damaging(0.98) TCGA-DK-AA6S-01 15 44629992 44629992 G T CASC4 Missense_Mutation p.G203V 0.16 tolerated(0.2) benign(0.007) TCGA-DK-AA6S-01 15 45453040 45453040 C A DUOX1 Silent p.I1236I 0.19 TCGA-DK-AA6S-01 15 51250830 51250830 C T AP4E1 Nonsense_Mutation p.Q564* 0.38 TCGA-DK-AA6S-01 15 51514482 51514482 C G CYP19A1 Intron 0.50 TCGA-DK-AA6S-01 15 53082160 53082160 C G ONECUT1 5'UTR 0.20 TCGA-DK-AA6S-01 15 62176440 62176440 T C VPS13C Missense_Mutation p.K3124E 0.28 deleterious(0) probably_damaging(0.927) TCGA-DK-AA6S-01 15 70342365 70342365 C T TLE3 3'UTR 0.41 TCGA-DK-AA6S-01 15 70949451 70949451 C G UACA Missense_Mutation p.D1399H 0.16 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 15 75556418 75556418 G C GOLGA6C Missense_Mutation p.E186D 0.21 tolerated(0.31) probably_damaging(0.953) TCGA-DK-AA6S-01 15 76165889 76165889 C G UBE2Q2 Missense_Mutation p.Q190E 0.18 deleterious(0.02) benign(0.021) TCGA-DK-AA6S-01 15 77348525 77348525 C A TSPAN3 Nonsense_Mutation p.E46* 0.43 TCGA-DK-AA6S-01 15 78316614 78316614 C T TBC1D2B Missense_Mutation p.E452K 0.36 deleterious(0) possibly_damaging(0.762) TCGA-DK-AA6S-01 15 83788390 83788390 C G TM6SF1 Missense_Mutation p.H119D 0.21 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6S-01 15 83805436 83805436 C A TM6SF1 3'UTR 0.41 TCGA-DK-AA6S-01 15 85121424 85121424 G C LINC00933 RNA 0.23 TCGA-DK-AA6S-01 15 99670419 99670419 C G SYNM Missense_Mutation p.F617L 0.48 tolerated(0.16) benign(0.05) TCGA-DK-AA6S-01 16 14761587 14761587 G - BFAR Frame_Shift_Del p.C419Sfs*39 0.22 TCGA-DK-AA6S-01 16 15224971 15224971 G A RP11-1186N24.5 RNA 0.32 TCGA-DK-AA6S-01 16 16208825 16208825 C T ABCC1 Silent p.F1094F 0.17 TCGA-DK-AA6S-01 16 23391439 23391439 C G SCNN1B Missense_Mutation p.I497M 0.33 deleterious(0.04) probably_damaging(0.992) TCGA-DK-AA6S-01 16 23598542 23598542 G C NDUFAB1 Silent p.L89L 0.29 TCGA-DK-AA6S-01 16 24582657 24582657 C T RBBP6 Nonsense_Mutation p.Q1424* 0.35 TCGA-DK-AA6S-01 16 28943305 28943305 C T CD19 5'UTR 0.33 TCGA-DK-AA6S-01 16 28943306 28943306 G T CD19 5'UTR 0.33 TCGA-DK-AA6S-01 16 311495 311495 C T ITFG3 Silent p.L230L 0.50 TCGA-DK-AA6S-01 16 31282354 31282354 G A ITGAM Missense_Mutation p.M169I 0.05 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6S-01 16 4559637 4559637 G C HMOX2 Silent p.L277L 0.19 TCGA-DK-AA6S-01 16 4938145 4938145 C G PPL Missense_Mutation p.K824N 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 16 5115733 5115733 C T C16orf89 Silent p.L59L 0.38 TCGA-DK-AA6S-01 16 52480014 52480014 G A TOX3 Silent p.F266F 0.32 TCGA-DK-AA6S-01 16 53493442 53493442 C T RBL2 Missense_Mutation p.S420F 0.26 deleterious(0) benign(0.236) TCGA-DK-AA6S-01 16 56532403 56532403 G C BBS2 Missense_Mutation p.F535L 0.31 tolerated(0.13) benign(0.149) TCGA-DK-AA6S-01 16 57290894 57290894 G A PLLP Silent p.F160F 0.33 TCGA-DK-AA6S-01 16 57416471 57416471 C G CX3CL1 Missense_Mutation p.P241A 0.19 tolerated(0.17) benign(0.004) TCGA-DK-AA6S-01 16 57416559 57416559 C T CX3CL1 Missense_Mutation p.A270V 0.36 deleterious(0.03) benign(0.064) TCGA-DK-AA6S-01 16 57416610 57416610 C G CX3CL1 Missense_Mutation p.S287C 0.33 deleterious(0.02) probably_damaging(0.942) TCGA-DK-AA6S-01 16 67979898 67979898 G A SLC12A4 Silent p.L901L 0.28 TCGA-DK-AA6S-01 16 69385568 69385568 G C TMED6 Missense_Mutation p.S30C 0.22 deleterious(0.02) possibly_damaging(0.503) TCGA-DK-AA6S-01 16 70293069 70293069 C G AARS Missense_Mutation p.M602I 0.52 deleterious(0.03) benign(0.076) TCGA-DK-AA6S-01 16 71961754 71961754 G A IST1 3'UTR 0.42 TCGA-DK-AA6S-01 16 75269197 75269197 C T BCAR1 Missense_Mutation p.D580N 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 16 76495885 76495885 G C CNTNAP4 Missense_Mutation p.V383L 0.53 tolerated(0.08) benign(0.029) TCGA-DK-AA6S-01 16 84211385 84211385 C A DNAAF1 Missense_Mutation p.Q706K 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-DK-AA6S-01 16 88931997 88931997 C T PABPN1L Missense_Mutation p.D145N 0.20 deleterious(0) probably_damaging(0.913) TCGA-DK-AA6S-01 16 89971449 89971449 G A TCF25 Missense_Mutation p.E525K 0.19 tolerated(0.2) benign(0.009) TCGA-DK-AA6S-01 16 90124507 90124507 C A PRDM7 3'UTR 0.54 TCGA-DK-AA6S-01 17 1578986 1578986 G A PRPF8 Missense_Mutation p.R934C 0.07 deleterious(0.01) possibly_damaging(0.696) TCGA-DK-AA6S-01 17 18965424 18965424 G C SNORD3B-1 RNA 0.10 TCGA-DK-AA6S-01 17 27959792 27959792 G C SSH2 Missense_Mutation p.P780R 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA6S-01 17 29855790 29855790 C G RAB11FIP4 Silent p.L549L 0.19 TCGA-DK-AA6S-01 17 30195095 30195095 G A UTP6 Silent p.F511F 0.28 TCGA-DK-AA6S-01 17 34171327 34171327 C T TAF15 Nonsense_Mutation p.Q378* 0.28 TCGA-DK-AA6S-01 17 34935742 34935742 C T GGNBP2 Missense_Mutation p.H305Y 0.34 tolerated(0.74) benign(0.14) TCGA-DK-AA6S-01 17 35837060 35837060 C G TADA2A Missense_Mutation p.I435M 0.30 deleterious(0.01) benign(0.238) TCGA-DK-AA6S-01 17 37922405 37922405 C T IKZF3 Missense_Mutation p.D390N 0.28 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 17 38447912 38447912 G C CDC6 Missense_Mutation p.D218H 0.45 deleterious(0) possibly_damaging(0.863) TCGA-DK-AA6S-01 17 38926645 38926645 C T KRT26 Missense_Mutation p.A181T 0.28 tolerated(0.17) benign(0.091) TCGA-DK-AA6S-01 17 3920853 3920853 C G ZZEF1 Missense_Mutation p.D2605H 0.42 deleterious(0.03) benign(0.365) TCGA-DK-AA6S-01 17 39564974 39564974 C G AC003958.2 RNA 0.26 TCGA-DK-AA6S-01 17 39595520 39595520 C A KRT38 Missense_Mutation p.D223Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 17 39775784 39775784 G A KRT17 3'UTR 0.40 TCGA-DK-AA6S-01 17 40825561 40825561 C T PLEKHH3 Silent p.V168V 0.19 TCGA-DK-AA6S-01 17 40825658 40825658 C G PLEKHH3 Intron 0.33 TCGA-DK-AA6S-01 17 40874883 40874883 C G EZH1 Silent p.V139V 0.44 TCGA-DK-AA6S-01 17 41925949 41925949 G C CD300LG Missense_Mutation p.E23Q 0.05 deleterious(0) benign(0.102) TCGA-DK-AA6S-01 17 42940197 42940197 C G EFTUD2 Silent p.L497L 0.33 TCGA-DK-AA6S-01 17 43227187 43227187 G A HEXIM1 Missense_Mutation p.M210I 0.31 tolerated(0.05) possibly_damaging(0.455) TCGA-DK-AA6S-01 17 43321226 43321226 A T FMNL1 Missense_Mutation p.E761V 0.10 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 17 45695788 45695788 G A NPEPPS Missense_Mutation p.D790N 0.27 tolerated(0.44) benign(0.009) TCGA-DK-AA6S-01 17 45994443 45994443 C T SP2 Nonsense_Mutation p.Q336* 0.29 TCGA-DK-AA6S-01 17 4689474 4689474 G A VMO1 Silent p.F58F 0.44 TCGA-DK-AA6S-01 17 48474734 48474734 G A LRRC59 5'UTR 0.54 TCGA-DK-AA6S-01 17 48940731 48940731 G C TOB1 Silent p.L216L 0.18 TCGA-DK-AA6S-01 17 48940752 48940752 G A TOB1 Silent p.L209L 0.21 TCGA-DK-AA6S-01 17 48940758 48940758 G A TOB1 Silent p.I207I 0.19 TCGA-DK-AA6S-01 17 48941243 48941243 G T TOB1 Missense_Mutation p.P46T 0.27 deleterious(0.02) benign(0.08) TCGA-DK-AA6S-01 17 55339536 55339536 C T MSI2 Missense_Mutation p.R99C 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 17 56682459 56682459 G C TEX14 Missense_Mutation p.R412G 0.41 deleterious(0.03) benign(0.134) TCGA-DK-AA6S-01 17 59115249 59115249 G C BCAS3 Splice_Site p.X603_splice 0.46 TCGA-DK-AA6S-01 17 59761256 59761256 C T BRIP1 Missense_Mutation p.D1051N 0.27 tolerated_low_confidence(1) benign(0.006) TCGA-DK-AA6S-01 17 59947173 59947173 A T INTS2 Silent p.V993V 0.31 TCGA-DK-AA6S-01 17 60042743 60042743 G A MED13 Missense_Mutation p.P1490S 0.33 tolerated(0.26) benign(0.004) TCGA-DK-AA6S-01 17 61432470 61432470 G T TANC2 Missense_Mutation p.M693I 0.23 deleterious(0.03) benign(0.082) TCGA-DK-AA6S-01 17 61571302 61571302 G A ACE Silent p.L1052L 0.41 TCGA-DK-AA6S-01 17 62496182 62496182 C T DDX5 Silent p.Q568Q 0.34 TCGA-DK-AA6S-01 17 62532766 62532766 G C CEP95 Missense_Mutation p.R706T 0.21 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 17 63637148 63637148 C A CEP112 Missense_Mutation p.L911F 0.39 tolerated(0.32) benign(0.004) TCGA-DK-AA6S-01 17 64299089 64299089 C A PRKCA Silent p.I40I 0.28 TCGA-DK-AA6S-01 17 65026586 65026586 C A CACNG4 Silent p.L150L 0.37 TCGA-DK-AA6S-01 17 68128780 68128780 C G KCNJ16 Missense_Mutation p.F184L 0.29 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 17 7138847 7138847 C T PHF23 3'UTR 0.41 TCGA-DK-AA6S-01 17 7217689 7217689 G A GPS2 Nonsense_Mutation p.Q80* 0.52 TCGA-DK-AA6S-01 17 7217829 7217829 G A GPS2 Missense_Mutation p.S61L 0.45 deleterious(0.01) possibly_damaging(0.504) TCGA-DK-AA6S-01 17 72848237 72848237 G C GRIN2C Missense_Mutation p.R305G 0.23 deleterious(0.01) benign(0.326) TCGA-DK-AA6S-01 17 7319281 7319281 G A NLGN2 Missense_Mutation p.D497N 0.44 deleterious(0.02) possibly_damaging(0.514) TCGA-DK-AA6S-01 17 73489646 73489646 G C KIAA0195 Missense_Mutation p.D721H 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 17 73760040 73760040 G A GALK1 Missense_Mutation p.S98L 0.13 tolerated(0.08) benign(0.002) TCGA-DK-AA6S-01 17 73923544 73923544 G A FBF1 Missense_Mutation p.S142F 0.25 tolerated(0.05) benign(0.387) TCGA-DK-AA6S-01 17 74136183 74136183 C T FOXJ1 Silent p.R98R 0.24 TCGA-DK-AA6S-01 17 7462370 7462370 C G TNFSF13 Missense_Mutation p.S5C 0.44 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-DK-AA6S-01 17 74734349 74734349 C T MFSD11 5'UTR 0.30 TCGA-DK-AA6S-01 17 74865130 74865130 G A MGAT5B 5'Flank 0.40 TCGA-DK-AA6S-01 17 76867036 76867036 G A TIMP2 Missense_Mutation p.S95L 0.26 deleterious(0) probably_damaging(0.941) TCGA-DK-AA6S-01 17 76867053 76867053 G C TIMP2 Missense_Mutation p.I89M 0.28 deleterious(0.02) benign(0.248) TCGA-DK-AA6S-01 17 77922773 77922773 A C TBC1D16 Missense_Mutation p.F480C 0.08 deleterious(0.01) benign(0.151) TCGA-DK-AA6S-01 17 79426528 79426528 G C RP11-1055B8.7 Missense_Mutation p.D1935H 0.06 probably_damaging(0.999) TCGA-DK-AA6S-01 17 79514659 79514659 C A C17orf70 Silent p.L483L 0.26 TCGA-DK-AA6S-01 17 80049149 80049149 C G FASN Missense_Mutation p.E481Q 0.58 deleterious(0.04) benign(0.039) TCGA-DK-AA6S-01 17 9631378 9631378 C G USP43 Missense_Mutation p.L815V 0.68 deleterious(0) possibly_damaging(0.802) TCGA-DK-AA6S-01 17 9632212 9632212 C T USP43 Missense_Mutation p.P1093S 0.44 tolerated(0.16) benign(0.029) TCGA-DK-AA6S-01 17 9801363 9801363 G T RCVRN 3'UTR 0.43 TCGA-DK-AA6S-01 18 11824976 11824976 G C GNAL Missense_Mutation p.E228D 0.35 tolerated(0.19) probably_damaging(0.962) TCGA-DK-AA6S-01 18 12699052 12699052 G C CEP76 Missense_Mutation p.S149C 0.31 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 18 19405715 19405715 G C MIB1 Intron 0.62 TCGA-DK-AA6S-01 18 23866305 23866305 G T TAF4B Missense_Mutation p.A478S 0.47 tolerated(0.17) benign(0.014) TCGA-DK-AA6S-01 18 2890777 2890777 G A EMILIN2 Missense_Mutation p.D218N 0.28 deleterious(0.03) benign(0.037) TCGA-DK-AA6S-01 18 47438454 47438454 G C MYO5B Missense_Mutation p.S727C 0.46 deleterious(0.05) possibly_damaging(0.778) TCGA-DK-AA6S-01 18 48190218 48190218 C G MAPK4 5'UTR 0.62 TCGA-DK-AA6S-01 18 50432645 50432645 G A DCC Missense_Mutation p.R215Q 0.37 tolerated(0.12) benign(0.002) TCGA-DK-AA6S-01 18 54591253 54591253 C T WDR7 Silent p.F1209F 0.51 TCGA-DK-AA6S-01 18 9255315 9255315 G C ANKRD12 Missense_Mutation p.E684Q 0.09 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-DK-AA6S-01 19 10090718 10090718 G A COL5A3 Silent p.L870L 0.19 TCGA-DK-AA6S-01 19 10225381 10225381 G T PPAN-P2RY11 Silent p.P784P 0.30 TCGA-DK-AA6S-01 19 10939793 10939793 G T DNM2 Missense_Mutation p.D714Y 0.33 deleterious(0) possibly_damaging(0.793) TCGA-DK-AA6S-01 19 11118674 11118674 G A SMARCA4 Missense_Mutation p.E700K 0.29 benign(0.018) TCGA-DK-AA6S-01 19 11118698 11118698 G C SMARCA4 Missense_Mutation p.E708Q 0.36 possibly_damaging(0.772) TCGA-DK-AA6S-01 19 11266438 11266438 G A SPC24 Silent p.R5R 0.22 TCGA-DK-AA6S-01 19 11266484 11266484 G C SPC24 5'UTR 0.29 TCGA-DK-AA6S-01 19 12734514 12734514 G A ZNF791 Missense_Mutation p.D2N 0.19 tolerated(0.08) possibly_damaging(0.711) TCGA-DK-AA6S-01 19 13325339 13325339 C G CACNA1A Missense_Mutation p.D1939H 0.38 probably_damaging(0.934) TCGA-DK-AA6S-01 19 14829947 14829947 C T ZNF333 Missense_Mutation p.S603L 0.36 deleterious(0) benign(0.307) TCGA-DK-AA6S-01 19 17170416 17170416 G T HAUS8 Nonsense_Mutation p.S124* 0.36 TCGA-DK-AA6S-01 19 18650482 18650482 G A FKBP8 Missense_Mutation p.S114L 0.05 tolerated(0.26) possibly_damaging(0.689) TCGA-DK-AA6S-01 19 19459745 19459745 C T MAU2 Silent p.V452V 0.23 TCGA-DK-AA6S-01 19 19603220 19603220 G C GATAD2A Missense_Mutation p.L125F 0.29 tolerated(0.35) benign(0.005) TCGA-DK-AA6S-01 19 21720350 21720350 C T ZNF429 Missense_Mutation p.H499Y 0.12 deleterious(0.02) probably_damaging(1) TCGA-DK-AA6S-01 19 3005850 3005850 G A TLE2 Silent p.I539I 0.34 TCGA-DK-AA6S-01 19 33602689 33602689 G A GPATCH1 Missense_Mutation p.D549N 0.34 deleterious(0) benign(0.103) TCGA-DK-AA6S-01 19 36222983 36222983 C T KMT2B Missense_Mutation p.S1871L 0.27 possibly_damaging(0.885) TCGA-DK-AA6S-01 19 36339656 36339656 C T NPHS1 Silent p.Q351Q 0.30 TCGA-DK-AA6S-01 19 37853005 37853005 C T HKR1 Intron 0.30 TCGA-DK-AA6S-01 19 39880146 39880146 C G PAF1 Missense_Mutation p.E111D 0.17 tolerated(0.74) benign(0.086) TCGA-DK-AA6S-01 19 39960870 39960870 G C SUPT5H Missense_Mutation p.E496Q 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-DK-AA6S-01 19 40392509 40392509 G C FCGBP Silent p.L2665L 0.16 TCGA-DK-AA6S-01 19 41700605 41700605 G C CYP2S1 Missense_Mutation p.D112H 0.26 tolerated(0.05) benign(0.043) TCGA-DK-AA6S-01 19 42311150 42311150 G A CEACAM3 Intron 0.32 TCGA-DK-AA6S-01 19 43690519 43690519 G T PSG5 Silent p.I13I 0.27 TCGA-DK-AA6S-01 19 44571433 44571433 G T ZNF223 3'UTR 0.17 TCGA-DK-AA6S-01 19 45681424 45681424 A T TRAPPC6A Missense_Mutation p.L18Q 0.22 deleterious(0.02) probably_damaging(0.993) TCGA-DK-AA6S-01 19 45681425 45681425 G A TRAPPC6A Silent p.L18L 0.26 TCGA-DK-AA6S-01 19 46388228 46388228 C T IRF2BP1 Missense_Mutation p.E269K 0.28 deleterious(0.01) possibly_damaging(0.651) TCGA-DK-AA6S-01 19 46974246 46974246 C T PNMAL1 Missense_Mutation p.G16E 0.08 deleterious(0.03) probably_damaging(0.969) TCGA-DK-AA6S-01 19 47219559 47219559 G A PRKD2 Silent p.P23P 0.27 TCGA-DK-AA6S-01 19 49632242 49632242 C T PPFIA3 Silent p.F160F 0.26 TCGA-DK-AA6S-01 19 50397559 50397559 G A IL4I1 Missense_Mutation p.S200L 0.30 deleterious(0) possibly_damaging(0.686) TCGA-DK-AA6S-01 19 51507041 51507041 G C KLK9 Silent p.L174L 0.31 TCGA-DK-AA6S-01 19 54695740 54695740 G T TSEN34 Nonsense_Mutation p.E138* 0.20 TCGA-DK-AA6S-01 19 56423967 56423967 C G NLRP13 Missense_Mutation p.E406Q 0.41 tolerated(0.46) benign(0.058) TCGA-DK-AA6S-01 19 5724873 5724873 G A CATSPERD Silent p.G42G 0.21 TCGA-DK-AA6S-01 19 57293484 57293484 C A ZIM2 Silent p.P161P 0.29 TCGA-DK-AA6S-01 19 57932315 57932315 G A ZNF17 Silent p.L485L 0.33 TCGA-DK-AA6S-01 19 58083336 58083336 G C ZNF416 3'UTR 0.24 TCGA-DK-AA6S-01 19 58117734 58117734 C T ZNF530 Missense_Mutation p.H281Y 0.19 tolerated(0.28) possibly_damaging(0.467) TCGA-DK-AA6S-01 19 58199374 58199374 C A ZNF551 Missense_Mutation p.H577Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 19 5866613 5866613 C G FUT5 Nonstop_Mutation p.*375Sext*20 0.36 TCGA-DK-AA6S-01 19 7964514 7964514 C T LRRC8E Silent p.L369L 0.34 TCGA-DK-AA6S-01 19 8527461 8527461 C G HNRNPM Nonsense_Mutation p.S111* 0.30 TCGA-DK-AA6S-01 19 9407526 9407526 G A ZNF699 Missense_Mutation p.S185L 0.21 tolerated(0.57) benign(0) TCGA-DK-AA6S-01 1 10523630 10523630 C G DFFA Missense_Mutation p.Q163H 0.39 tolerated(0.29) probably_damaging(0.981) TCGA-DK-AA6S-01 1 108697741 108697741 G C SLC25A24 Nonsense_Mutation p.S229* 0.61 TCGA-DK-AA6S-01 1 111495198 111495198 G A LRIF1 Missense_Mutation p.S103F 0.45 deleterious(0.02) probably_damaging(0.919) TCGA-DK-AA6S-01 1 111495452 111495452 G A LRIF1 Intron 0.46 TCGA-DK-AA6S-01 1 111784863 111784863 G C CHI3L2 Missense_Mutation p.K350N 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-DK-AA6S-01 1 120286648 120286648 C T PHGDH Silent p.F529F 0.24 TCGA-DK-AA6S-01 1 12908074 12908074 G C HNRNPCL1 Silent p.L23L 0.08 TCGA-DK-AA6S-01 1 12939724 12939724 C A PRAMEF4 Missense_Mutation p.D360Y 0.30 deleterious(0.03) possibly_damaging(0.739) TCGA-DK-AA6S-01 1 145507651 145507651 C T RBM8A 5'UTR 0.60 TCGA-DK-AA6S-01 1 150443089 150443089 A T RPRD2 Missense_Mutation p.E555D 0.38 tolerated_low_confidence(0.07) benign(0.004) TCGA-DK-AA6S-01 1 150972408 150972408 C G FAM63A Silent p.L304L 0.35 TCGA-DK-AA6S-01 1 151820738 151820738 C A THEM5 Missense_Mutation p.M165I 0.35 tolerated(0.32) benign(0.052) TCGA-DK-AA6S-01 1 152282728 152282728 C G FLG Missense_Mutation p.R1545T 0.31 benign(0.227) TCGA-DK-AA6S-01 1 152286940 152286940 G A FLG Missense_Mutation p.S141F 0.06 probably_damaging(0.982) TCGA-DK-AA6S-01 1 153043014 153043014 G C SPRR2B 3'UTR 0.33 TCGA-DK-AA6S-01 1 153609066 153609066 T C CHTOP Translation_Start_Site p.M1? 0.07 deleterious(0) benign(0.042) TCGA-DK-AA6S-01 1 153905478 153905478 C T DENND4B Missense_Mutation p.R1161H 0.29 tolerated(0.16) benign(0.001) TCGA-DK-AA6S-01 1 154228194 154228194 C A UBAP2L Nonsense_Mutation p.S707* 0.29 TCGA-DK-AA6S-01 1 154228203 154228203 C T UBAP2L Missense_Mutation p.S710F 0.30 deleterious(0.03) unknown(0) TCGA-DK-AA6S-01 1 155753781 155753781 G C GON4L Missense_Mutation p.L630V 0.07 deleterious(0.02) possibly_damaging(0.618) TCGA-DK-AA6S-01 1 156235982 156235982 G C SMG5 Nonsense_Mutation p.S482* 0.41 TCGA-DK-AA6S-01 1 156532411 156532411 G T IQGAP3 Missense_Mutation p.A282D 0.24 deleterious(0.02) benign(0.03) TCGA-DK-AA6S-01 1 156708489 156708489 A G MRPL24 Missense_Mutation p.L3P 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 1 156828443 156828443 G A INSRR 5'UTR 0.27 TCGA-DK-AA6S-01 1 157494093 157494093 C T FCRL5 Missense_Mutation p.E739K 0.16 tolerated(0.12) benign(0.023) TCGA-DK-AA6S-01 1 15819379 15819379 C T CASP9 3'UTR 0.32 TCGA-DK-AA6S-01 1 158576799 158576799 G A OR10Z1 Missense_Mutation p.D191N 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-DK-AA6S-01 1 158647531 158647531 C G SPTA1 Silent p.L302L 0.24 TCGA-DK-AA6S-01 1 161017864 161017864 G T ARHGAP30 Silent p.R983R 0.32 TCGA-DK-AA6S-01 1 161183837 161183837 G C NDUFS2 Intron 0.22 TCGA-DK-AA6S-01 1 162325125 162325125 C G NOS1AP Silent p.G248G 0.27 TCGA-DK-AA6S-01 1 162549266 162549266 C T UAP1 Silent p.F178F 0.25 TCGA-DK-AA6S-01 1 16578086 16578086 C T FBXO42 Silent p.L411L 0.32 TCGA-DK-AA6S-01 1 168066112 168066112 A T GPR161 Missense_Mutation p.S265T 0.34 tolerated(0.28) possibly_damaging(0.674) TCGA-DK-AA6S-01 1 169762212 169762212 C T METTL18 Missense_Mutation p.G209R 0.22 tolerated(0.14) probably_damaging(0.982) TCGA-DK-AA6S-01 1 172501713 172501713 C T SUCO 5'Flank 0.33 TCGA-DK-AA6S-01 1 173934216 173934216 C G RC3H1 Missense_Mutation p.L459F 0.09 tolerated(0.31) probably_damaging(0.909) TCGA-DK-AA6S-01 1 178414680 178414680 G A RASAL2 Missense_Mutation p.E504K 0.37 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 1 179078329 179078363 AGATGAGAAGTTACCCGTGAGTTCGTATTTCTTAT - ABL2 Frame_Shift_Del p.H680Rfs*8 0.36 TCGA-DK-AA6S-01 1 180064823 180064823 G C CEP350 Missense_Mutation p.E2893Q 0.36 probably_damaging(0.999) TCGA-DK-AA6S-01 1 181705556 181705556 C T CACNA1E Silent p.F1136F 0.30 TCGA-DK-AA6S-01 1 19670890 19670890 G C CAPZB Missense_Mutation p.I231M 0.24 deleterious(0) probably_damaging(0.974) TCGA-DK-AA6S-01 1 201184249 201184249 G A IGFN1 Missense_Mutation p.D2988N 0.29 benign(0.051) TCGA-DK-AA6S-01 1 203044796 203044796 C T PPFIA4 Missense_Mutation p.S656F 0.44 deleterious(0) possibly_damaging(0.677) TCGA-DK-AA6S-01 1 203276368 203276368 C G BTG2 Missense_Mutation p.H93Q 0.21 deleterious(0.04) benign(0.051) TCGA-DK-AA6S-01 1 203276592 203276592 C G BTG2 3'UTR 0.48 TCGA-DK-AA6S-01 1 205132857 205132857 G A DSTYK Silent p.L517L 0.21 TCGA-DK-AA6S-01 1 206239305 206239305 G A C1orf186 3'UTR 0.32 TCGA-DK-AA6S-01 1 209799075 209799075 C T LAMB3 Missense_Mutation p.E632K 0.16 tolerated(0.3) benign(0.103) TCGA-DK-AA6S-01 1 209799085 209799085 C T LAMB3 Silent p.K628K 0.12 TCGA-DK-AA6S-01 1 209799093 209799093 C A LAMB3 Missense_Mutation p.D626Y 0.10 deleterious(0.01) benign(0.322) TCGA-DK-AA6S-01 1 209799263 209799263 C T LAMB3 Missense_Mutation p.R569Q 0.24 deleterious(0.02) probably_damaging(1) TCGA-DK-AA6S-01 1 213009358 213009358 C T C1orf227 Missense_Mutation p.R45K 0.29 deleterious(0.01) benign(0.14) TCGA-DK-AA6S-01 1 213009360 213009360 C T C1orf227 Silent p.L44L 0.28 TCGA-DK-AA6S-01 1 214638197 214638197 G C PTPN14 5'UTR 0.48 TCGA-DK-AA6S-01 1 220267580 220267580 C T IARS2 Missense_Mutation p.R8C 0.42 tolerated_low_confidence(0.11) benign(0.001) TCGA-DK-AA6S-01 1 220267601 220267601 C G IARS2 Missense_Mutation p.L15V 0.32 tolerated_low_confidence(0.25) benign(0.002) TCGA-DK-AA6S-01 1 220955117 220955117 C T MARC2 Intron 0.32 TCGA-DK-AA6S-01 1 222695836 222695836 C G HHIPL2 3'UTR 0.26 TCGA-DK-AA6S-01 1 223983999 223983999 C T TP53BP2 Missense_Mutation p.E748K 0.30 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6S-01 1 226127130 226127130 G C LEFTY2 Missense_Mutation p.S223W 0.22 tolerated(0.09) benign(0.017) TCGA-DK-AA6S-01 1 227922985 227922985 A T JMJD4 Missense_Mutation p.V43E 0.28 tolerated_low_confidence(0.2) benign(0) TCGA-DK-AA6S-01 1 228594250 228594250 C T TRIM11 Missense_Mutation p.D5N 0.38 tolerated(0.22) possibly_damaging(0.495) TCGA-DK-AA6S-01 1 233091399 233091399 G C NTPCR Missense_Mutation p.G44A 0.28 tolerated(0.07) benign(0.074) TCGA-DK-AA6S-01 1 233507842 233507842 G A MLK4 Silent p.L537L 0.26 TCGA-DK-AA6S-01 1 242162317 242162317 C T MAP1LC3C 5'UTR 0.31 TCGA-DK-AA6S-01 1 243305623 243305623 C T CEP170 Missense_Mutation p.E1352K 0.21 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 1 36053974 36053974 G A TFAP2E Silent p.L202L 0.09 TCGA-DK-AA6S-01 1 38489280 38489280 C T UTP11L Nonsense_Mutation p.Q248* 0.21 TCGA-DK-AA6S-01 1 39802221 39802221 G A MACF1 Intron 0.05 TCGA-DK-AA6S-01 1 39927575 39927575 G C MACF1 Missense_Mutation p.E5123Q 0.31 probably_damaging(0.962) TCGA-DK-AA6S-01 1 42050429 42050429 C T HIVEP3 Missense_Mutation p.E14K 0.45 benign(0.427) TCGA-DK-AA6S-01 1 47505149 47505149 G C CYP4X1 Missense_Mutation p.E340Q 0.47 tolerated(1) benign(0.057) TCGA-DK-AA6S-01 1 47505164 47505164 G A CYP4X1 Missense_Mutation p.E345K 0.49 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 1 53262010 53262010 G T ZYG11B Missense_Mutation p.D461Y 0.47 deleterious(0) benign(0.264) TCGA-DK-AA6S-01 1 6705132 6705132 C T DNAJC11 Missense_Mutation p.D317N 0.08 tolerated(0.18) benign(0.005) TCGA-DK-AA6S-01 1 9107780 9107780 G A SLC2A5 Silent p.L103L 0.31 TCGA-DK-AA6S-01 1 93649644 93649644 G A CCDC18 Missense_Mutation p.E136K 0.52 tolerated(1) benign(0.001) TCGA-DK-AA6S-01 20 10626118 10626118 C T JAG1 Splice_Site p.X667_splice 0.21 TCGA-DK-AA6S-01 20 13912302 13912302 A C SEL1L2 Missense_Mutation p.I77R 0.22 tolerated(0.29) benign(0.001) TCGA-DK-AA6S-01 20 17595505 17595505 C G RRBP1 Missense_Mutation p.K924N 0.21 deleterious(0) possibly_damaging(0.607) TCGA-DK-AA6S-01 20 17950466 17950466 G C MGME1 5'UTR 0.43 TCGA-DK-AA6S-01 20 18163827 18163827 G A CSRP2BP Silent p.L623L 0.28 TCGA-DK-AA6S-01 20 29847376 29847376 G C DEFB115 Missense_Mutation p.E70Q 0.28 tolerated(0.59) benign(0.05) TCGA-DK-AA6S-01 20 30193125 30193125 C T ID1 5'UTR 0.50 TCGA-DK-AA6S-01 20 30676390 30676390 G A HCK Silent p.L345L 0.33 TCGA-DK-AA6S-01 20 3240648 3240648 G A C20orf194 Missense_Mutation p.S967L 0.21 deleterious(0.05) benign(0.407) TCGA-DK-AA6S-01 20 33519777 33519777 G A GSS Missense_Mutation p.R332C 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-DK-AA6S-01 20 33519778 33519778 G C GSS Silent p.L331L 0.33 TCGA-DK-AA6S-01 20 34542288 34542288 G A SCAND1 5'UTR 0.47 TCGA-DK-AA6S-01 20 35467775 35467775 G A SOGA1 Nonsense_Mutation p.Q253* 0.39 TCGA-DK-AA6S-01 20 35467783 35467783 T C SOGA1 Missense_Mutation p.D250G 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6S-01 20 44005932 44005932 C T TP53TG5 Silent p.R58R 0.29 TCGA-DK-AA6S-01 20 44470012 44470012 G C SNX21 3'UTR 0.24 TCGA-DK-AA6S-01 20 44511688 44511688 C G ZSWIM1 Missense_Mutation p.P153A 0.29 tolerated(0.52) benign(0.034) TCGA-DK-AA6S-01 20 44574905 44574905 G A PCIF1 Missense_Mutation p.E499K 0.38 deleterious(0.04) possibly_damaging(0.831) TCGA-DK-AA6S-01 20 45354341 45354341 C G SLC2A10 Missense_Mutation p.F222L 0.27 deleterious(0.01) benign(0.352) TCGA-DK-AA6S-01 20 470469 470469 G C CSNK2A1 Missense_Mutation p.I226M 0.12 deleterious(0.03) possibly_damaging(0.862) TCGA-DK-AA6S-01 20 47592558 47592558 G A ARFGEF2 Missense_Mutation p.E594K 0.28 tolerated(0.06) benign(0.012) TCGA-DK-AA6S-01 20 47886923 47886923 C T ZNFX1 Missense_Mutation p.D476N 0.31 deleterious(0.01) possibly_damaging(0.889) TCGA-DK-AA6S-01 20 57599208 57599208 C T TUBB1 Silent p.F242F 0.42 TCGA-DK-AA6S-01 20 58519019 58519019 G A FAM217B Nonsense_Mutation p.W7* 0.32 TCGA-DK-AA6S-01 20 5996067 5996067 G C CRLS1 Missense_Mutation p.D169H 0.31 deleterious(0) probably_damaging(0.962) TCGA-DK-AA6S-01 20 61941159 61941159 G C COL20A1 Silent p.L385L 0.53 TCGA-DK-AA6S-01 20 62331885 62331885 G A ARFRP1 Intron 0.58 TCGA-DK-AA6S-01 20 8770828 8770828 G A PLCB1 Missense_Mutation p.E1115K 0.18 tolerated(0.08) benign(0.064) TCGA-DK-AA6S-01 21 30414378 30414378 T C USP16 Missense_Mutation p.F359L 0.06 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 21 38098578 38098578 C G SIM2 Missense_Mutation p.F234L 0.37 deleterious(0) probably_damaging(0.965) TCGA-DK-AA6S-01 21 38128936 38128936 C G HLCS Missense_Mutation p.R639T 0.28 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6S-01 21 38568211 38568211 G A TTC3 Missense_Mutation p.R1818Q 0.28 tolerated(1) benign(0) TCGA-DK-AA6S-01 21 39086859 39086859 C G KCNJ6 Missense_Mutation p.E201Q 0.32 tolerated(0.43) probably_damaging(0.981) TCGA-DK-AA6S-01 21 41032700 41032700 G A B3GALT5 Missense_Mutation p.E72K 0.40 deleterious(0) benign(0.102) TCGA-DK-AA6S-01 21 43413787 43413787 C A ZBTB21 Missense_Mutation p.D140Y 0.23 deleterious(0) possibly_damaging(0.886) TCGA-DK-AA6S-01 21 45170415 45170415 G T PDXK Nonsense_Mutation p.E167* 0.33 TCGA-DK-AA6S-01 21 45674517 45674517 C T DNMT3L Missense_Mutation p.D226N 0.33 tolerated(1) benign(0.003) TCGA-DK-AA6S-01 21 46308686 46308686 C G ITGB2 Missense_Mutation p.E668Q 0.31 tolerated(0.3) benign(0.062) TCGA-DK-AA6S-01 22 30163496 30163496 G A UQCR10 Missense_Mutation p.D37N 0.17 tolerated(0.06) probably_damaging(0.983) TCGA-DK-AA6S-01 22 36960872 36960872 C T CACNG2 Silent p.K166K 0.50 TCGA-DK-AA6S-01 22 36960929 36960929 C G CACNG2 Silent p.L147L 0.52 TCGA-DK-AA6S-01 22 37492054 37492054 C A TMPRSS6 Missense_Mutation p.V170L 0.48 tolerated(0.36) benign(0.005) TCGA-DK-AA6S-01 22 41166760 41166760 C T SLC25A17 3'UTR 0.67 TCGA-DK-AA6S-01 22 50686515 50686515 G A HDAC10 Silent p.L381L 0.74 TCGA-DK-AA6S-01 22 50716386 50716399 GTGCCCAGGCGCCA - PLXNB2 Frame_Shift_Del p.L1644Rfs*25 0.65 TCGA-DK-AA6S-01 22 50900022 50900022 G A SBF1 Silent p.L923L 0.60 TCGA-DK-AA6S-01 2 102504297 102504297 G C MAP4K4 Missense_Mutation p.E1132Q 0.35 deleterious_low_confidence(0.02) probably_damaging(0.975) TCGA-DK-AA6S-01 2 10263860 10263860 C T RRM2 Intron 0.28 TCGA-DK-AA6S-01 2 103274349 103274349 C T SLC9A2 Nonsense_Mutation p.Q206* 0.25 TCGA-DK-AA6S-01 2 10581667 10581667 C A ODC1 Silent p.P403P 0.24 TCGA-DK-AA6S-01 2 111425146 111425146 C A BUB1 Nonsense_Mutation p.E253* 0.23 TCGA-DK-AA6S-01 2 112944774 112944774 C G FBLN7 Missense_Mutation p.I337M 0.40 tolerated(0.06) benign(0.285) TCGA-DK-AA6S-01 2 112944793 112944793 C G FBLN7 Missense_Mutation p.L344V 0.39 tolerated(0.26) probably_damaging(0.998) TCGA-DK-AA6S-01 2 113325602 113325602 G CA POLR1B Frame_Shift_Ins p.G602Afs*17 0.17 TCGA-DK-AA6S-01 2 11741048 11741048 C T GREB1 Missense_Mutation p.P819L 0.26 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 2 122208499 122208499 C T CLASP1 Missense_Mutation p.E505K 0.21 tolerated(0.29) benign(0.005) TCGA-DK-AA6S-01 2 127453757 127453757 C G GYPC 3'UTR 0.40 TCGA-DK-AA6S-01 2 128342382 128342382 G C MYO7B Silent p.L528L 0.34 TCGA-DK-AA6S-01 2 128351216 128351216 G A MYO7B Silent p.L747L 0.50 TCGA-DK-AA6S-01 2 138417269 138417269 C G THSD7B Missense_Mutation p.R1474G 0.33 deleterious(0.04) unknown(0) TCGA-DK-AA6S-01 2 152352870 152352870 C G NEB Missense_Mutation p.E8136Q 0.25 possibly_damaging(0.607) TCGA-DK-AA6S-01 2 160075867 160075867 C G TANC1 Nonsense_Mutation p.S1166* 0.31 TCGA-DK-AA6S-01 2 162902102 162902102 G C DPP4 Missense_Mutation p.I102M 0.39 tolerated(0.08) benign(0.002) TCGA-DK-AA6S-01 2 168726474 168726474 G A B3GALT1 Missense_Mutation p.E309K 0.33 tolerated(0.39) benign(0.052) TCGA-DK-AA6S-01 2 170093704 170093704 C A LRP2 Nonsense_Mutation p.E1534* 0.16 TCGA-DK-AA6S-01 2 171906326 171906326 C T TLK1 Silent p.V326V 0.22 TCGA-DK-AA6S-01 2 174062920 174062920 C G MLTK Intron 0.38 TCGA-DK-AA6S-01 2 179600547 179600547 C T TTN Missense_Mutation p.D4876N 0.15 TCGA-DK-AA6S-01 2 179604620 179604620 G A TTN Missense_Mutation p.S4447L 0.25 TCGA-DK-AA6S-01 2 182359498 182359498 C G ITGA4 Missense_Mutation p.S433C 0.42 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 2 190044360 190044360 G C COL5A2 5'UTR 0.50 TCGA-DK-AA6S-01 2 191900937 191900937 C T STAT4 Missense_Mutation p.R508H 0.20 deleterious(0) probably_damaging(0.991) TCGA-DK-AA6S-01 2 192251995 192251995 C G MYO1B Missense_Mutation p.L534V 0.35 deleterious(0.04) benign(0.173) TCGA-DK-AA6S-01 2 196545734 196545734 C - SLC39A10 Frame_Shift_Del p.S323Ffs*2 0.23 TCGA-DK-AA6S-01 2 196837022 196837022 C G DNAH7 Missense_Mutation p.E668Q 0.22 tolerated(0.07) benign(0.008) TCGA-DK-AA6S-01 2 202251164 202251164 G T TRAK2 Missense_Mutation p.N580K 0.41 deleterious(0.01) possibly_damaging(0.611) TCGA-DK-AA6S-01 2 202339369 202339369 G C STRADB Splice_Site p.X106_splice 0.27 TCGA-DK-AA6S-01 2 203420091 203420091 C A BMPR2 Missense_Mutation p.S568Y 0.19 deleterious(0.04) benign(0.429) TCGA-DK-AA6S-01 2 208866020 208866020 G A PLEKHM3 Missense_Mutation p.S115L 0.23 tolerated(0.17) benign(0.012) TCGA-DK-AA6S-01 2 216232737 216232737 C G FN1 Missense_Mutation p.L2289F 0.50 tolerated(0.15) possibly_damaging(0.674) TCGA-DK-AA6S-01 2 219611749 219611749 C T TTLL4 Silent p.F666F 0.31 TCGA-DK-AA6S-01 2 224629892 224629893 - ATCATT AP1S3 Intron 0.20 TCGA-DK-AA6S-01 2 230670548 230670548 C T TRIP12 Intron 0.23 TCGA-DK-AA6S-01 2 232143132 232143132 C T ARMC9 Silent p.L504L 0.50 TCGA-DK-AA6S-01 2 234890441 234890441 C G TRPM8 Missense_Mutation p.S824C 0.46 tolerated(0.12) benign(0.024) TCGA-DK-AA6S-01 2 238296818 238296818 G A COL6A3 Missense_Mutation p.S240F 0.21 probably_damaging(0.961) TCGA-DK-AA6S-01 2 26416530 26416530 C A HADHA Nonsense_Mutation p.E601* 0.46 TCGA-DK-AA6S-01 2 26531840 26531840 C G GPR113 3'Flank 0.49 TCGA-DK-AA6S-01 2 27261400 27261400 G T TMEM214 Missense_Mutation p.K431N 0.31 deleterious(0) benign(0.247) TCGA-DK-AA6S-01 2 27604601 27604601 G A PPM1G Silent p.I502I 0.18 TCGA-DK-AA6S-01 2 27688348 27688348 C T IFT172 Missense_Mutation p.E623K 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-DK-AA6S-01 2 27862954 27862954 C G GPN1 Silent p.L268L 0.39 TCGA-DK-AA6S-01 2 27917570 27917570 G C SLC4A1AP 3'UTR 0.37 TCGA-DK-AA6S-01 2 3197931 3197931 G C TSSC1 Missense_Mutation p.I220M 0.04 tolerated(0.08) benign(0.151) TCGA-DK-AA6S-01 2 37475422 37475422 C G NDUFAF7 Missense_Mutation p.Q419E 0.26 tolerated_low_confidence(1) benign(0) TCGA-DK-AA6S-01 2 42281421 42281421 G C PKDCC Missense_Mutation p.E336D 0.36 tolerated(0.08) benign(0.222) TCGA-DK-AA6S-01 2 45169610 45169610 G A SIX3 Missense_Mutation p.E123K 0.38 deleterious(0.02) benign(0.062) TCGA-DK-AA6S-01 2 47287947 47287947 G C TTC7A Missense_Mutation p.G731A 0.25 tolerated(0.55) benign(0.004) TCGA-DK-AA6S-01 2 47703558 47703558 A T MSH2 Silent p.V686V 0.47 TCGA-DK-AA6S-01 2 55806830 55806830 C T SMEK2 Missense_Mutation p.D485N 0.40 tolerated(0.14) benign(0.258) TCGA-DK-AA6S-01 2 55825623 55825623 C T SMEK2 Missense_Mutation p.E284K 0.05 deleterious(0.01) possibly_damaging(0.775) TCGA-DK-AA6S-01 2 58425731 58425731 G A FANCL Nonsense_Mutation p.Q180* 0.06 TCGA-DK-AA6S-01 2 65299484 65299484 G A CEP68 Silent p.L418L 0.43 TCGA-DK-AA6S-01 2 69172444 69172444 G C GKN2 3'UTR 0.29 TCGA-DK-AA6S-01 2 70315904 70315904 C G PCBP1 Missense_Mutation p.I343M 0.47 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6S-01 2 79313576 79313576 C T REG1B Missense_Mutation p.E80K 0.39 deleterious(0.03) probably_damaging(0.976) TCGA-DK-AA6S-01 2 8822196 8822196 G A ID2 5'UTR 0.30 TCGA-DK-AA6S-01 2 88327729 88327729 C G KRCC1 Silent p.L118L 0.12 TCGA-DK-AA6S-01 2 89986990 89986990 G T IGKV2D-29 Missense_Mutation p.G91W 0.24 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 2 97007342 97007342 T A NCAPH Intron 0.34 TCGA-DK-AA6S-01 2 97279241 97279241 A T KANSL3 Missense_Mutation p.L260H 0.13 deleterious(0) probably_damaging(0.963) TCGA-DK-AA6S-01 2 97751472 97751472 G A FAHD2B Silent p.L217L 0.31 TCGA-DK-AA6S-01 2 97784114 97784114 C T ANKRD36 Missense_Mutation p.L116F 0.31 deleterious(0.02) possibly_damaging(0.807) TCGA-DK-AA6S-01 2 99412612 99412612 C G KIAA1211L Missense_Mutation p.R907T 0.36 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6S-01 3 101136554 101136554 G C SENP7 Missense_Mutation p.A122G 0.06 deleterious(0) possibly_damaging(0.843) TCGA-DK-AA6S-01 3 108107819 108107819 G C MYH15 Missense_Mutation p.Q1865E 0.27 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6S-01 3 108348003 108348003 G A DZIP3 Missense_Mutation p.D226N 0.32 tolerated(0.13) benign(0.016) TCGA-DK-AA6S-01 3 111667863 111667863 G A PHLDB2 Missense_Mutation p.D858N 0.31 tolerated(0.25) benign(0.066) TCGA-DK-AA6S-01 3 111844081 111844081 G C GCSAM Missense_Mutation p.P73A 0.22 tolerated(0.07) benign(0.034) TCGA-DK-AA6S-01 3 113377090 113377090 C G KIAA2018 Missense_Mutation p.E1147Q 0.35 possibly_damaging(0.791) TCGA-DK-AA6S-01 3 119306404 119306404 G T ADPRH Silent p.V251V 0.16 TCGA-DK-AA6S-01 3 122545849 122545849 C G DIRC2 Missense_Mutation p.L214V 0.27 tolerated(0.89) benign(0.006) TCGA-DK-AA6S-01 3 124210187 124210187 G A KALRN Silent p.V1533V 0.36 TCGA-DK-AA6S-01 3 124802830 124802830 C T SLC12A8 Missense_Mutation p.M683I 0.36 deleterious(0.02) benign(0.043) TCGA-DK-AA6S-01 3 124811000 124811000 C T SLC12A8 Missense_Mutation p.R583K 0.30 tolerated(0.31) benign(0.004) TCGA-DK-AA6S-01 3 130435420 130435420 G C PIK3R4 Silent p.L717L 0.30 TCGA-DK-AA6S-01 3 130452567 130452567 G C PIK3R4 Missense_Mutation p.F425L 0.32 tolerated(1) benign(0.007) TCGA-DK-AA6S-01 3 13376975 13376975 G A NUP210 Silent p.L1274L 0.41 TCGA-DK-AA6S-01 3 134670679 134670679 C A EPHB1 Missense_Mutation p.P197H 0.34 deleterious(0) probably_damaging(0.928) TCGA-DK-AA6S-01 3 141163251 141163251 C G ZBTB38 Nonsense_Mutation p.S674* 0.33 TCGA-DK-AA6S-01 3 141457242 141457242 C G RNF7 Nonsense_Mutation p.S20* 0.47 TCGA-DK-AA6S-01 3 142496514 142496514 C G TRPC1 Missense_Mutation p.L225V 0.22 deleterious(0) possibly_damaging(0.617) TCGA-DK-AA6S-01 3 14724187 14724187 C T C3orf20 5'UTR 0.38 TCGA-DK-AA6S-01 3 14724254 14724254 C T C3orf20 Nonsense_Mutation p.Q12* 0.32 TCGA-DK-AA6S-01 3 157154583 157154583 C T PTX3 5'UTR 0.40 TCGA-DK-AA6S-01 3 159609927 159609927 G A IQCJ-SCHIP1 Missense_Mutation p.E530K 0.58 deleterious(0.01) probably_damaging(0.99) TCGA-DK-AA6S-01 3 160245745 160245745 G T KPNA4 Silent p.I184I 0.39 TCGA-DK-AA6S-01 3 182759468 182759468 C G MCCC1 Missense_Mutation p.R385T 0.06 deleterious(0) probably_damaging(0.968) TCGA-DK-AA6S-01 3 18391087 18391087 G A SATB1 Missense_Mutation p.R655W 0.37 deleterious(0) possibly_damaging(0.781) TCGA-DK-AA6S-01 3 193042710 193042710 G C ATP13A5 Silent p.L539L 0.49 TCGA-DK-AA6S-01 3 195452027 195452027 C G MUC20 Missense_Mutation p.P185A 0.05 tolerated_low_confidence(0.19) possibly_damaging(0.737) TCGA-DK-AA6S-01 3 195452035 195452035 C T MUC20 Silent p.I187I 0.10 TCGA-DK-AA6S-01 3 25805695 25805695 C G NGLY1 Missense_Mutation p.K118N 0.25 tolerated(0.17) benign(0.005) TCGA-DK-AA6S-01 3 32860419 32860419 G C TRIM71 Missense_Mutation p.D283H 0.31 tolerated(0.13) benign(0.111) TCGA-DK-AA6S-01 3 33134500 33134500 C A TMPPE Missense_Mutation p.Q396H 0.33 tolerated(0.08) possibly_damaging(0.542) TCGA-DK-AA6S-01 3 37512580 37512580 C G ITGA9 Missense_Mutation p.H90D 0.30 tolerated(0.23) possibly_damaging(0.663) TCGA-DK-AA6S-01 3 38349057 38349057 G A SLC22A14 Silent p.K207K 0.38 TCGA-DK-AA6S-01 3 39228623 39228623 C T XIRP1 Missense_Mutation p.E772K 0.37 tolerated(0.18) benign(0.15) TCGA-DK-AA6S-01 3 40464880 40464880 G A ENTPD3 Silent p.Q401Q 0.27 TCGA-DK-AA6S-01 3 40529625 40529625 G A ZNF619 Missense_Mutation p.E582K 0.09 deleterious_low_confidence(0.05) benign(0.355) TCGA-DK-AA6S-01 3 42201718 42201718 A G TRAK1 Intron 0.29 TCGA-DK-AA6S-01 3 42679096 42679096 C T NKTR Nonsense_Mutation p.Q634* 0.32 TCGA-DK-AA6S-01 3 4494722 4494722 G A SUMF1 Silent p.I94I 0.25 TCGA-DK-AA6S-01 3 4494728 4494728 G T SUMF1 Silent p.V92V 0.26 TCGA-DK-AA6S-01 3 46414907 46414907 G C CCR5 Missense_Mutation p.E172Q 0.32 deleterious(0.04) possibly_damaging(0.457) TCGA-DK-AA6S-01 3 47461047 47461048 - G SCAP Frame_Shift_Ins p.S571Qfs*13 0.22 TCGA-DK-AA6S-01 3 48613976 48613976 G A COL7A1 Silent p.V1905V 0.35 TCGA-DK-AA6S-01 3 48630668 48630668 C T COL7A1 Silent p.L183L 0.27 TCGA-DK-AA6S-01 3 48698252 48698252 C A CELSR3 Missense_Mutation p.A606S 0.29 tolerated(0.5) probably_damaging(0.92) TCGA-DK-AA6S-01 3 49721992 49721992 C T MST1 Missense_Mutation p.E623K 0.30 deleterious(0.02) benign(0.325) TCGA-DK-AA6S-01 3 49728662 49728662 G C RNF123 Missense_Mutation p.E22Q 0.34 deleterious_low_confidence(0.02) benign(0.103) TCGA-DK-AA6S-01 3 50148189 50148189 G T RBM5 Missense_Mutation p.D481Y 0.34 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6S-01 3 52088014 52088014 G A DUSP7 Silent p.I298I 0.29 TCGA-DK-AA6S-01 3 52245348 52245348 G C ALAS1 Silent p.L460L 0.23 TCGA-DK-AA6S-01 3 52387644 52387644 G C DNAH1 Missense_Mutation p.E1159Q 0.60 probably_damaging(0.976) TCGA-DK-AA6S-01 3 53804577 53804577 C G CACNA1D Missense_Mutation p.Q1368E 0.24 deleterious(0) probably_damaging(0.985) TCGA-DK-AA6S-01 3 57135303 57135303 C T IL17RD Silent p.P356P 0.22 TCGA-DK-AA6S-01 3 58517065 58517065 C G ACOX2 Missense_Mutation p.K244N 0.35 deleterious(0.01) benign(0.167) TCGA-DK-AA6S-01 3 66431361 66431361 C T SLC25A26 3'Flank 0.38 TCGA-DK-AA6S-01 3 89259450 89259450 C G EPHA3 Nonsense_Mutation p.Y198* 0.31 TCGA-DK-AA6S-01 3 9146373 9146373 G C SRGAP3 Silent p.L138L 0.27 TCGA-DK-AA6S-01 3 9416328 9416328 C G THUMPD3 Silent p.L312L 0.21 TCGA-DK-AA6S-01 3 97806689 97806689 T C OR5AC2 Missense_Mutation p.F225L 0.10 tolerated(0.12) benign(0.042) TCGA-DK-AA6S-01 4 105412309 105412309 G A CXXC4 Silent p.L217L 0.33 TCGA-DK-AA6S-01 4 111430914 111430914 C G ENPEP Nonsense_Mutation p.S382* 0.21 TCGA-DK-AA6S-01 4 114286308 114286308 G C ANK2 Missense_Mutation p.E3668Q 0.27 probably_damaging(0.999) TCGA-DK-AA6S-01 4 120194837 120194837 C G USP53 Missense_Mutation p.S742C 0.33 deleterious_low_confidence(0.02) benign(0.033) TCGA-DK-AA6S-01 4 122254086 122254086 C T QRFPR Silent p.V229V 0.27 TCGA-DK-AA6S-01 4 126373575 126373575 G C FAT4 Missense_Mutation p.D3802H 0.14 probably_damaging(0.987) TCGA-DK-AA6S-01 4 129919041 129919041 C G SCLT1 Missense_Mutation p.E201D 0.22 deleterious(0.05) benign(0.392) TCGA-DK-AA6S-01 4 13339579 13339579 G C HSP90AB2P RNA 0.23 TCGA-DK-AA6S-01 4 140587225 140587225 C G MGST2 Missense_Mutation p.Q18E 0.33 tolerated(0.31) possibly_damaging(0.906) TCGA-DK-AA6S-01 4 151827516 151827516 G C LRBA Nonsense_Mutation p.S512* 0.26 TCGA-DK-AA6S-01 4 152096135 152096135 C G SH3D19 Missense_Mutation p.E127D 0.46 deleterious(0.03) benign(0.077) TCGA-DK-AA6S-01 4 153247244 153247244 C T FBXW7 Missense_Mutation p.D520N 0.38 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 4 162577546 162577546 C G FSTL5 Silent p.L276L 0.29 TCGA-DK-AA6S-01 4 174253358 174253358 C A HMGB2 Missense_Mutation p.S168I 0.16 tolerated(0.17) benign(0.049) TCGA-DK-AA6S-01 4 175231081 175231081 G T CEP44 Silent p.S253S 0.07 TCGA-DK-AA6S-01 4 187534266 187534266 C T FAT1 Missense_Mutation p.A3154T 0.15 benign(0.008) TCGA-DK-AA6S-01 4 189020184 189020184 C T TRIML2 Intron 0.36 TCGA-DK-AA6S-01 4 1955246 1955246 C G WHSC1 Nonsense_Mutation p.S778* 0.35 TCGA-DK-AA6S-01 4 38799897 38799897 C G TLR1 Missense_Mutation p.D186H 0.22 tolerated(0.56) benign(0.008) TCGA-DK-AA6S-01 4 38800498 38800498 C A TLR1 5'UTR 0.13 TCGA-DK-AA6S-01 4 4393204 4393204 G C NSG1 Silent p.V44V 0.21 TCGA-DK-AA6S-01 4 56230291 56230291 C G SRD5A3 Missense_Mutation p.H139D 0.33 deleterious(0) probably_damaging(0.96) TCGA-DK-AA6S-01 4 5961091 5961091 G A C4orf50 3'UTR 0.05 TCGA-DK-AA6S-01 4 6349680 6349680 G C PPP2R2C Missense_Mutation p.S228C 0.24 deleterious(0) possibly_damaging(0.482) TCGA-DK-AA6S-01 4 7043514 7043514 C G CCDC96 Missense_Mutation p.Q384H 0.38 tolerated(0.12) benign(0.056) TCGA-DK-AA6S-01 4 7043724 7043724 C T CCDC96 Silent p.R314R 0.34 TCGA-DK-AA6S-01 4 70465092 70465092 C G UGT2A1 Missense_Mutation p.E456Q 0.30 deleterious(0.01) possibly_damaging(0.74) TCGA-DK-AA6S-01 4 71201585 71201585 G C CABS1 Missense_Mutation p.D277H 0.13 tolerated(0.06) possibly_damaging(0.876) TCGA-DK-AA6S-01 4 83840209 83840209 C G THAP9 3'UTR 0.44 TCGA-DK-AA6S-01 4 85636459 85636459 G C WDFY3 Silent p.V2651V 0.16 TCGA-DK-AA6S-01 4 89744315 89744315 C T FAM13A Intron 0.20 TCGA-DK-AA6S-01 4 945478 945478 G A TMEM175 Missense_Mutation p.M117I 0.24 deleterious(0.03) possibly_damaging(0.706) TCGA-DK-AA6S-01 5 127641566 127641566 A T FBN2 Missense_Mutation p.C1833S 0.51 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6S-01 5 134154561 134154561 G C DDX46 Missense_Mutation p.W947C 0.39 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 5 134914162 134914162 C G CXCL14 Missense_Mutation p.M56I 0.52 tolerated(1) benign(0.001) TCGA-DK-AA6S-01 5 139892431 139892431 C T ANKHD1 Nonsense_Mutation p.Q1375* 0.51 TCGA-DK-AA6S-01 5 140227970 140227970 C G PCDHA9 5'UTR 0.08 TCGA-DK-AA6S-01 5 140627249 140627249 C T PCDHB15 Silent p.F701F 0.52 TCGA-DK-AA6S-01 5 140724717 140724717 G C PCDHGA3 Missense_Mutation p.D373H 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA6S-01 5 140724883 140724883 G T PCDHGA3 Missense_Mutation p.G428V 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA6S-01 5 145500054 145500054 C G LARS Missense_Mutation p.V1069L 0.06 tolerated(0.39) benign(0.003) TCGA-DK-AA6S-01 5 153085577 153085577 G T GRIA1 Missense_Mutation p.L601F 0.07 tolerated(0.08) probably_damaging(1) TCGA-DK-AA6S-01 5 159992659 159992659 G A ATP10B Missense_Mutation p.S1396L 0.51 tolerated(0.7) benign(0.013) TCGA-DK-AA6S-01 5 16758331 16758331 C G MYO10 Missense_Mutation p.D582H 0.34 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 5 169805702 169805702 A T KCNMB1 3'UTR 0.44 TCGA-DK-AA6S-01 5 180582010 180582010 C T OR2V2 Missense_Mutation p.T23I 0.50 deleterious(0.05) benign(0.017) TCGA-DK-AA6S-01 5 19473192 19473192 G A CDH18 3'UTR 0.28 TCGA-DK-AA6S-01 5 33441241 33441241 G A TARS Missense_Mutation p.E17K 0.37 tolerated_low_confidence(0.23) benign(0.034) TCGA-DK-AA6S-01 5 35753723 35753723 C G SPEF2 Intron 0.44 TCGA-DK-AA6S-01 5 37329343 37329343 G C NUP155 Missense_Mutation p.L588V 0.36 tolerated(0.17) benign(0.013) TCGA-DK-AA6S-01 5 43487124 43487124 C G C5orf34 Missense_Mutation p.E604Q 0.38 tolerated(0.07) probably_damaging(0.968) TCGA-DK-AA6S-01 5 56207096 56207096 G A SETD9 Missense_Mutation p.D67N 0.61 tolerated(0.06) benign(0.059) TCGA-DK-AA6S-01 5 56207237 56207237 G A SETD9 Missense_Mutation p.E114K 0.42 tolerated(0.05) possibly_damaging(0.713) TCGA-DK-AA6S-01 5 63510165 63510165 G A RNF180 Missense_Mutation p.A338T 0.55 tolerated(0.32) benign(0.001) TCGA-DK-AA6S-01 5 70828231 70828231 G A BDP1 Missense_Mutation p.E1957K 0.57 tolerated(0.05) possibly_damaging(0.819) TCGA-DK-AA6S-01 5 70927981 70927981 G A MCCC2 Missense_Mutation p.E258K 0.45 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-DK-AA6S-01 5 71490881 71490881 G A MAP1B Missense_Mutation p.E567K 0.64 unknown(0) TCGA-DK-AA6S-01 5 82554419 82554419 G C XRCC4 Missense_Mutation p.R272S 0.43 deleterious(0) probably_damaging(0.966) TCGA-DK-AA6S-01 5 82554521 82554521 G A XRCC4 Intron 0.42 TCGA-DK-AA6S-01 5 86675635 86675635 G C RASA1 Missense_Mutation p.E857D 0.40 tolerated(0.27) benign(0.016) TCGA-DK-AA6S-01 5 86690915 86690915 C T CCNH Silent p.K293K 0.52 TCGA-DK-AA6S-01 6 108204254 108204254 C A SEC63 Missense_Mutation p.D591Y 0.21 deleterious(0) possibly_damaging(0.781) TCGA-DK-AA6S-01 6 119337909 119337909 C G FAM184A Intron 0.24 TCGA-DK-AA6S-01 6 1313320 1313320 C G FOXQ1 Silent p.L127L 0.31 TCGA-DK-AA6S-01 6 1313563 1313563 C G FOXQ1 Silent p.V208V 0.35 TCGA-DK-AA6S-01 6 13487045 13487045 G A GFOD1 Silent p.F26F 0.29 TCGA-DK-AA6S-01 6 136972133 136972133 G A MAP3K5 Missense_Mutation p.P593S 0.24 tolerated(0.08) probably_damaging(0.997) TCGA-DK-AA6S-01 6 142764668 142764668 G C GPR126 3'UTR 0.44 TCGA-DK-AA6S-01 6 143074259 143074259 C G HIVEP2 Missense_Mutation p.K2442N 0.17 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-DK-AA6S-01 6 144768777 144768777 G T UTRN Missense_Mutation p.D588Y 0.38 deleterious(0) probably_damaging(0.968) TCGA-DK-AA6S-01 6 147124399 147124399 G C ADGB Intron 0.44 TCGA-DK-AA6S-01 6 150001347 150001347 C G LATS1 Missense_Mutation p.E753Q 0.33 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 6 153296240 153296240 T - FBXO5 Frame_Shift_Del p.K207Rfs*9 0.25 TCGA-DK-AA6S-01 6 159001988 159001988 G C TMEM181 Missense_Mutation p.Q180H 0.35 tolerated(0.07) benign(0.321) TCGA-DK-AA6S-01 6 160514591 160514591 C T IGF2R Intron 0.15 TCGA-DK-AA6S-01 6 163736092 163736092 C T PACRG 3'UTR 0.22 TCGA-DK-AA6S-01 6 165703548 165703548 C T C6orf118 Missense_Mutation p.E377K 0.15 tolerated(0.32) benign(0.009) TCGA-DK-AA6S-01 6 167453545 167453545 C T FGFR1OP 3'UTR 0.27 TCGA-DK-AA6S-01 6 29012038 29012038 C T OR2W1 Missense_Mutation p.M305I 0.46 tolerated(0.11) benign(0.001) TCGA-DK-AA6S-01 6 3083474 3083474 C A RIPK1 Silent p.P205P 0.31 TCGA-DK-AA6S-01 6 31597423 31597423 G A PRRC2A Silent p.V685V 0.50 TCGA-DK-AA6S-01 6 31833510 31833510 C T SLC44A4 Silent p.Q513Q 0.49 TCGA-DK-AA6S-01 6 32095528 32095528 C G ATF6B Splice_Site p.X31_splice 0.46 TCGA-DK-AA6S-01 6 32095951 32095951 C A ATF6B Missense_Mutation p.D12Y 0.45 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-DK-AA6S-01 6 36483150 36483150 C T STK38 Missense_Mutation p.D212N 0.12 deleterious(0) possibly_damaging(0.802) TCGA-DK-AA6S-01 6 38749076 38749076 C A DNAH8 Missense_Mutation p.P512H 0.19 probably_damaging(0.998) TCGA-DK-AA6S-01 6 42851229 42851229 C A RPL7L1 Nonsense_Mutation p.S54* 0.24 TCGA-DK-AA6S-01 6 43008110 43008110 C T CUL7 Missense_Mutation p.G1444R 0.43 tolerated(0.18) benign(0.014) TCGA-DK-AA6S-01 6 43008119 43008119 C G CUL7 Missense_Mutation p.E1441Q 0.41 tolerated(0.12) benign(0.299) TCGA-DK-AA6S-01 6 43400097 43400097 C G ABCC10 Missense_Mutation p.H127D 0.16 tolerated(0.07) benign(0.021) TCGA-DK-AA6S-01 6 43401050 43401050 C G ABCC10 Missense_Mutation p.I444M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6S-01 6 44344877 44344877 C T SPATS1 3'UTR 0.31 TCGA-DK-AA6S-01 6 47252002 47252002 G T TNFRSF21 Missense_Mutation p.H305Q 0.19 tolerated(0.65) benign(0.072) TCGA-DK-AA6S-01 6 52876920 52876920 C G ICK Missense_Mutation p.D420H 0.30 deleterious(0.03) possibly_damaging(0.841) TCGA-DK-AA6S-01 6 76124591 76124591 G C FILIP1 Nonsense_Mutation p.S33* 0.16 TCGA-DK-AA6S-01 6 89808516 89808516 G A SRSF12 Silent p.S189S 0.35 TCGA-DK-AA6S-01 6 90087533 90087533 C G RRAGD Splice_Site p.X254_splice 0.36 TCGA-DK-AA6S-01 6 90421896 90421896 C T MDN1 Missense_Mutation p.E2504K 0.30 benign(0.007) TCGA-DK-AA6S-01 7 100172856 100172856 C G LRCH4 Silent p.V642V 0.44 TCGA-DK-AA6S-01 7 100479365 100479365 C T SRRT Nonsense_Mutation p.Q113* 0.33 TCGA-DK-AA6S-01 7 107872854 107872854 C G NRCAM Missense_Mutation p.E115Q 0.24 deleterious(0.01) probably_damaging(0.921) TCGA-DK-AA6S-01 7 111386437 111386437 C T DOCK4 Missense_Mutation p.E1535K 0.30 deleterious(0.03) benign(0.4) TCGA-DK-AA6S-01 7 114174736 114174736 G T FOXP2 Missense_Mutation p.S78I 0.21 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DK-AA6S-01 7 11521431 11521431 G T THSD7A Silent p.A667A 0.29 TCGA-DK-AA6S-01 7 117230420 117230420 G C CFTR Missense_Mutation p.D565H 0.22 deleterious(0) possibly_damaging(0.477) TCGA-DK-AA6S-01 7 120609186 120609186 C T ING3 Missense_Mutation p.S279L 0.32 tolerated(0.7) probably_damaging(0.945) TCGA-DK-AA6S-01 7 121942293 121942293 C T FEZF1 Missense_Mutation p.D396N 0.30 deleterious(0) probably_damaging(0.99) TCGA-DK-AA6S-01 7 128637583 128637583 C G TNPO3 Missense_Mutation p.E340Q 0.29 tolerated(0.16) benign(0.266) TCGA-DK-AA6S-01 7 142989485 142989485 G A CASP2 Silent p.L106L 0.30 TCGA-DK-AA6S-01 7 143632479 143632479 G C OR2F2 Missense_Mutation p.D52H 0.30 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 7 143956170 143956170 G A OR2A7 Silent p.L184L 0.22 TCGA-DK-AA6S-01 7 150648813 150648813 G T KCNH2 Silent p.T556T 0.39 TCGA-DK-AA6S-01 7 150753715 150753715 C T CDK5 Silent p.K88K 0.34 TCGA-DK-AA6S-01 7 150754180 150754180 C T CDK5 Silent p.V35V 0.30 TCGA-DK-AA6S-01 7 152346062 152346062 C A XRCC2 Nonsense_Mutation p.E170* 0.37 TCGA-DK-AA6S-01 7 154739651 154739651 C T PAXIP1 Missense_Mutation p.E962K 0.41 tolerated(0.15) unknown(0) TCGA-DK-AA6S-01 7 16899206 16899206 T G AGR3 Nonstop_Mutation p.*167Yext*26 0.31 TCGA-DK-AA6S-01 7 21550647 21550647 G C SP4 Missense_Mutation p.K705N 0.32 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 7 23240088 23240088 G C NUPL2 Silent p.V332V 0.30 TCGA-DK-AA6S-01 7 24324878 24324878 C A NPY Missense_Mutation p.L7M 0.09 tolerated(0.22) probably_damaging(0.99) TCGA-DK-AA6S-01 7 24784231 24784231 C T DFNA5 Silent p.L118L 0.26 TCGA-DK-AA6S-01 7 39991237 39991237 C G CDK13 Missense_Mutation p.Q333E 0.31 tolerated(0.49) unknown(0) TCGA-DK-AA6S-01 7 44099669 44099669 C G DBNL Missense_Mutation p.S366C 0.41 tolerated(0.16) benign(0.02) TCGA-DK-AA6S-01 7 44100530 44100530 C G DBNL 3'UTR 0.35 TCGA-DK-AA6S-01 7 44736042 44736042 G C OGDH Missense_Mutation p.D596H 0.29 deleterious(0) possibly_damaging(0.695) TCGA-DK-AA6S-01 7 44737008 44737008 G C OGDH Missense_Mutation p.K697N 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-DK-AA6S-01 7 45009699 45009699 G C MYO1G Missense_Mutation p.I424M 0.23 deleterious(0) possibly_damaging(0.766) TCGA-DK-AA6S-01 7 47467943 47467943 G A TNS3 Missense_Mutation p.S119L 0.25 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6S-01 7 56128052 56128052 C G CCT6A Missense_Mutation p.Q386E 0.24 deleterious(0.02) benign(0.196) TCGA-DK-AA6S-01 7 74103522 74103522 G C GTF2I Missense_Mutation p.R20S 0.27 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6S-01 7 77973234 77973234 T G MAGI2 Silent p.T423T 0.32 TCGA-DK-AA6S-01 7 81667533 81667533 C G CACNA2D1 Missense_Mutation p.D300H 0.31 tolerated(0.52) benign(0.004) TCGA-DK-AA6S-01 7 87174279 87174279 C T ABCB1 Missense_Mutation p.D642N 0.28 tolerated(0.31) benign(0.001) TCGA-DK-AA6S-01 7 87174303 87174303 C T ABCB1 Missense_Mutation p.E634K 0.30 tolerated(0.4) benign(0.003) TCGA-DK-AA6S-01 7 87537419 87537419 G C DBF4 Missense_Mutation p.D656H 0.21 deleterious(0.02) benign(0.002) TCGA-DK-AA6S-01 7 89939504 89939504 G A C7orf63 Silent p.V926V 0.37 TCGA-DK-AA6S-01 7 91715548 91715548 G A AKAP9 Missense_Mutation p.D3011N 0.24 benign(0.019) TCGA-DK-AA6S-01 7 92764254 92764254 C G SAMD9L Missense_Mutation p.R344T 0.08 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6S-01 7 99032854 99032854 C G ATP5J2-PTCD1 Silent p.V53V 0.29 TCGA-DK-AA6S-01 7 99441832 99441832 G A CYP3A43 Silent p.V95V 0.22 TCGA-DK-AA6S-01 7 99768101 99768101 C T GPC2 Missense_Mutation p.D498N 0.46 deleterious(0.02) probably_damaging(0.909) TCGA-DK-AA6S-01 8 103841517 103841517 C T AZIN1 Missense_Mutation p.M406I 0.30 tolerated(0.29) benign(0.004) TCGA-DK-AA6S-01 8 10468321 10468321 C T RP1L1 Missense_Mutation p.R1096Q 0.44 possibly_damaging(0.799) TCGA-DK-AA6S-01 8 106815214 106815214 C T ZFPM2 Silent p.Y968Y 0.13 TCGA-DK-AA6S-01 8 116631833 116631833 C A TRPS1 Missense_Mutation p.K164N 0.33 tolerated_low_confidence(0.47) benign(0.005) TCGA-DK-AA6S-01 8 125339646 125339646 C T TMEM65 Silent p.A122A 0.19 TCGA-DK-AA6S-01 8 144643973 144643973 G T GSDMD Missense_Mutation p.M266I 0.59 tolerated(0.73) benign(0.01) TCGA-DK-AA6S-01 8 144650425 144650425 C G MROH6 Missense_Mutation p.E551Q 0.17 tolerated(0.13) benign(0.187) TCGA-DK-AA6S-01 8 144681458 144681458 G C EEF1D 5'Flank 0.25 TCGA-DK-AA6S-01 8 145060242 145060242 G A PARP10 Silent p.L54L 0.33 TCGA-DK-AA6S-01 8 145111640 145111640 C T OPLAH Silent p.E575E 0.10 TCGA-DK-AA6S-01 8 145535454 145535454 C A HSF1 Silent p.I264I 0.37 TCGA-DK-AA6S-01 8 145624873 145624873 C T CPSF1 Silent p.K421K 0.27 TCGA-DK-AA6S-01 8 145736053 145736053 C G MFSD3 Silent p.V301V 0.29 TCGA-DK-AA6S-01 8 146016748 146016748 G A RPL8 Missense_Mutation p.S138F 0.33 deleterious(0) benign(0.228) TCGA-DK-AA6S-01 8 2005867 2005867 G A MYOM2 Missense_Mutation p.V177M 0.57 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 8 22163484 22163484 G A PIWIL2 Missense_Mutation p.M500I 0.34 deleterious(0.04) benign(0.183) TCGA-DK-AA6S-01 8 22885860 22885860 C T TNFRSF10B Silent p.L244L 0.37 TCGA-DK-AA6S-01 8 27373306 27373306 G T EPHX2 Missense_Mutation p.E269D 0.10 deleterious(0.03) benign(0.127) TCGA-DK-AA6S-01 8 38034611 38034611 C T BAG4 Missense_Mutation p.S75L 0.29 deleterious_low_confidence(0.01) benign(0.344) TCGA-DK-AA6S-01 8 42294608 42294608 C T SLC20A2 Silent p.E474E 0.48 TCGA-DK-AA6S-01 8 67488517 67488517 G C MYBL1 Missense_Mutation p.Q399E 0.38 tolerated(0.12) benign(0.41) TCGA-DK-AA6S-01 8 67504749 67504749 C A MYBL1 Nonsense_Mutation p.E265* 0.15 TCGA-DK-AA6S-01 8 67734614 67734614 G T SGK3 Missense_Mutation p.V113F 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-DK-AA6S-01 8 80963849 80963849 G C TPD52 Missense_Mutation p.S140C 0.24 deleterious(0) probably_damaging(0.987) TCGA-DK-AA6S-01 8 87591076 87591076 C T CNGB3 Silent p.Q648Q 0.27 TCGA-DK-AA6S-01 8 91054995 91054995 C T DECR1 Silent p.F235F 0.32 TCGA-DK-AA6S-01 8 92307760 92307760 C T SLC26A7 Silent p.G102G 0.23 TCGA-DK-AA6S-01 8 95158249 95158249 C A CDH17 Missense_Mutation p.D692Y 0.34 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 9 100093047 100093047 G C CCDC180 Missense_Mutation p.E802Q 0.15 tolerated(0.23) possibly_damaging(0.607) TCGA-DK-AA6S-01 9 107535280 107535280 C T NIPSNAP3B Missense_Mutation p.R224W 0.71 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6S-01 9 117266850 117266850 G A DFNB31 Silent p.L78L 0.46 TCGA-DK-AA6S-01 9 127074813 127074813 G T NEK6 Missense_Mutation p.R73L 0.52 tolerated_low_confidence(0.15) benign(0.168) TCGA-DK-AA6S-01 9 128070130 128070130 C T GAPVD1 Missense_Mutation p.P471L 0.55 tolerated(0.07) probably_damaging(0.999) TCGA-DK-AA6S-01 9 129870396 129870396 C T ANGPTL2 Silent p.Q205Q 0.13 TCGA-DK-AA6S-01 9 130550557 130550557 C T CDK9 Missense_Mutation p.A166V 0.57 deleterious(0) possibly_damaging(0.904) TCGA-DK-AA6S-01 9 130605388 130605388 G A ENG Silent p.F68F 0.23 TCGA-DK-AA6S-01 9 131767621 131767621 C T NUP188 Nonsense_Mutation p.R1517* 0.30 TCGA-DK-AA6S-01 9 13221383 13221383 T G MPDZ Silent p.G288G 0.57 TCGA-DK-AA6S-01 9 13221384 13221384 C G MPDZ Missense_Mutation p.G288A 0.57 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 9 135202259 135202259 C T SETX Missense_Mutation p.E1576K 0.60 deleterious(0.02) benign(0.005) TCGA-DK-AA6S-01 9 137321051 137321051 C T RXRA Silent p.S336S 0.37 TCGA-DK-AA6S-01 9 139264235 139264235 C T CARD9 Silent p.L348L 0.16 TCGA-DK-AA6S-01 9 139726170 139726170 G C RABL6 Intron 0.14 TCGA-DK-AA6S-01 9 19118330 19118330 G C PLIN2 Missense_Mutation p.H301D 0.59 tolerated(0.6) benign(0.043) TCGA-DK-AA6S-01 9 20865954 20865954 C G FOCAD Silent p.L695L 0.39 TCGA-DK-AA6S-01 9 21971036 21971036 C T CDKN2A Missense_Mutation p.D108N 0.50 deleterious(0.03) probably_damaging(0.96) TCGA-DK-AA6S-01 9 27950421 27950421 C T LINGO2 Silent p.L83L 0.37 TCGA-DK-AA6S-01 9 34517426 34517426 C T DNAI1 Silent p.I654I 0.45 TCGA-DK-AA6S-01 9 5757401 5757401 C G KIAA1432 Missense_Mutation p.L648V 0.54 deleterious(0) possibly_damaging(0.792) TCGA-DK-AA6S-01 9 5757408 5757408 C T KIAA1432 Missense_Mutation p.S650L 0.56 deleterious(0) benign(0.428) TCGA-DK-AA6S-01 9 72913105 72913105 G C SMC5 Missense_Mutation p.R426T 0.66 tolerated(0.14) benign(0.013) TCGA-DK-AA6S-01 9 77249547 77249547 G A RORB Missense_Mutation p.G32R 0.32 deleterious(0) probably_damaging(1) TCGA-DK-AA6S-01 9 94903865 94903865 C T snoU13 3'Flank 0.67 TCGA-DK-AA6S-01 9 95400337 95400337 G A IPPK Nonsense_Mutation p.Q288* 0.21 TCGA-DK-AA6S-01 X 102755702 102755702 C G RAB40A 5'UTR 0.50 TCGA-DK-AA6S-01 X 106069465 106069465 G C TBC1D8B Missense_Mutation p.E345Q 0.60 deleterious(0.03) probably_damaging(0.999) TCGA-DK-AA6S-01 X 12938507 12938507 C G TLR8 Missense_Mutation p.H450D 0.61 tolerated(0.13) benign(0.013) TCGA-DK-AA6S-01 X 129546579 129546579 G T RBMX2 Silent p.L242L 0.81 TCGA-DK-AA6S-01 X 12995033 12995033 C G TMSB4X 3'UTR 0.62 TCGA-DK-AA6S-01 X 153648391 153648391 G A TAZ Missense_Mutation p.E202K 0.74 deleterious(0) probably_damaging(0.982) TCGA-DK-AA6S-01 X 153648436 153648436 G A TAZ Intron 0.78 TCGA-DK-AA6S-01 X 153648455 153648455 G A TAZ Intron 0.82 TCGA-DK-AA6S-01 X 153649011 153649011 G C TAZ Silent p.L238L 0.68 TCGA-DK-AA6S-01 X 154327654 154327654 G A BRCC3 Missense_Mutation p.E205K 0.70 tolerated_low_confidence(0.22) benign(0.005) TCGA-DK-AA6S-01 X 17745288 17745288 C T NHS Missense_Mutation p.P1000L 0.63 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 X 31525406 31525406 G C DMD Silent p.L2794L 0.50 TCGA-DK-AA6S-01 X 69421860 69421860 C G DGAT2L6 Missense_Mutation p.S198C 0.57 deleterious(0.02) probably_damaging(0.937) TCGA-DK-AA6S-01 X 69421865 69421865 C G DGAT2L6 Missense_Mutation p.L200V 0.59 tolerated(0.77) benign(0.004) TCGA-DK-AA6S-01 X 69489237 69489237 T C ARR3 Translation_Start_Site p.M1? 0.11 deleterious(0.01) benign(0.01) TCGA-DK-AA6S-01 X 73811691 73811691 C T RLIM Missense_Mutation p.E487K 0.75 tolerated(0.15) unknown(0) TCGA-DK-AA6S-01 X 75651091 75651091 G A MAGEE1 Missense_Mutation p.R923K 0.64 tolerated(0.29) probably_damaging(0.956) TCGA-DK-AA6S-01 X 77912560 77912560 T A ZCCHC5 Missense_Mutation p.H453L 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6S-01 Y 14958275 14958275 C A USP9Y Missense_Mutation p.Q2196K 0.56 deleterious(0.01) possibly_damaging(0.49) TCGA-DK-AA6T-01 10 101648614 101648614 G A DNMBP Missense_Mutation p.R1085C 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA6T-01 10 50373838 50373838 G A C10orf128 Missense_Mutation p.T81I 0.36 deleterious(0.01) benign(0.26) TCGA-DK-AA6T-01 10 6148184 6148184 G A RBM17 Missense_Mutation p.R163Q 0.34 tolerated(0.16) benign(0.062) TCGA-DK-AA6T-01 10 73466770 73466770 G A C10orf105 3'Flank 0.35 TCGA-DK-AA6T-01 11 105948428 105948428 C A AASDHPPT 5'UTR 0.08 TCGA-DK-AA6T-01 11 113679918 113679918 G C USP28 Silent p.L677L 0.48 TCGA-DK-AA6T-01 11 126396467 126396467 G A KIRREL3 Silent p.D83D 0.44 TCGA-DK-AA6T-01 11 40137458 40137458 G C LRRC4C Missense_Mutation p.L129V 0.28 deleterious(0) probably_damaging(0.991) TCGA-DK-AA6T-01 11 554045 554045 G A LRRC56 Silent p.P466P 0.41 TCGA-DK-AA6T-01 11 63979189 63979189 G C FERMT3 Missense_Mutation p.K252N 0.39 deleterious(0) probably_damaging(0.979) TCGA-DK-AA6T-01 11 70333403 70333403 C G SHANK2 Missense_Mutation p.A1000P 0.39 tolerated(0.05) benign(0.013) TCGA-DK-AA6T-01 12 117710315 117710315 C T NOS1 Missense_Mutation p.V572M 0.27 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6T-01 12 133249288 133249288 C G POLE Missense_Mutation p.E537D 0.29 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6T-01 12 49177118 49177118 G C ADCY6 Missense_Mutation p.R34G 0.50 tolerated_low_confidence(0.06) benign(0.016) TCGA-DK-AA6T-01 12 56744888 56744888 C T STAT2 Missense_Mutation p.R343Q 0.58 tolerated(0.15) benign(0.187) TCGA-DK-AA6T-01 12 85255517 85255517 C T SLC6A15 Missense_Mutation p.R696Q 0.59 tolerated_low_confidence(0.45) possibly_damaging(0.787) TCGA-DK-AA6T-01 12 97051849 97051849 G C C12orf55 Missense_Mutation p.V1764L 0.61 deleterious(0.01) possibly_damaging(0.699) TCGA-DK-AA6T-01 13 48936995 48936995 C T RB1 Nonsense_Mutation p.R255* 0.72 TCGA-DK-AA6T-01 14 104642802 104642802 C G KIF26A Missense_Mutation p.A1226G 0.42 tolerated(0.46) benign(0.002) TCGA-DK-AA6T-01 14 106329458 106329466 TAGTAGTAG AAGTACTAC IGHJ6 Nonsense_Mutation p.YYYY1_?4 0.14 TCGA-DK-AA6T-01 14 106692118 106692118 G C IGHV3-21 Missense_Mutation p.L3V 0.30 deleterious_low_confidence(0.01) benign(0.131) TCGA-DK-AA6T-01 14 106692121 106692121 C T IGHV3-21 Missense_Mutation p.E2K 0.32 tolerated_low_confidence(0.12) benign(0.026) TCGA-DK-AA6T-01 14 107178871 107178871 T C IGHV2-70 Silent p.T102T 0.31 TCGA-DK-AA6T-01 14 107178935 107178935 C A IGHV2-70 Missense_Mutation p.S81I 0.31 deleterious(0) possibly_damaging(0.691) TCGA-DK-AA6T-01 14 107179055 107179055 C G IGHV2-70 Missense_Mutation p.C41S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-DK-AA6T-01 14 107179059 107179059 T C IGHV2-70 Missense_Mutation p.T40A 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-DK-AA6T-01 14 20019762 20019762 G A POTEM Silent p.P153P 0.20 TCGA-DK-AA6T-01 14 23344361 23344361 C T LRP10 Silent p.L105L 0.37 TCGA-DK-AA6T-01 14 39534130 39534130 C T SEC23A Missense_Mutation p.C432Y 0.32 tolerated(1) benign(0.01) TCGA-DK-AA6T-01 14 69259601 69259601 T A ZFP36L1 Nonsense_Mutation p.K19* 0.48 TCGA-DK-AA6T-01 14 75538463 75538463 G A ZC2HC1C Missense_Mutation p.R396H 0.09 deleterious(0) probably_damaging(1) TCGA-DK-AA6T-01 16 11219835 11219835 G A CLEC16A Splice_Site p.X825_splice 0.44 TCGA-DK-AA6T-01 16 20410468 20410468 C T PDILT Missense_Mutation p.G52D 0.38 deleterious(0.05) probably_damaging(0.945) TCGA-DK-AA6T-01 17 18088080 18088080 A G ALKBH5 Missense_Mutation p.K175E 0.25 tolerated(0.1) benign(0.229) TCGA-DK-AA6T-01 17 18088087 18088087 T A ALKBH5 Missense_Mutation p.V177E 0.26 tolerated(0.2) benign(0.13) TCGA-DK-AA6T-01 17 18088115 18088115 C T ALKBH5 Silent p.F186F 0.23 TCGA-DK-AA6T-01 17 18088248 18088248 A G ALKBH5 Missense_Mutation p.K231E 0.44 deleterious(0.01) possibly_damaging(0.816) TCGA-DK-AA6T-01 17 33689794 33689794 C G SLFN11 Missense_Mutation p.E345Q 0.31 tolerated(0.16) benign(0.092) TCGA-DK-AA6T-01 17 4686287 4686287 G C TM4SF5 Silent p.V178V 0.35 TCGA-DK-AA6T-01 17 73929085 73929085 G A FBF1 Missense_Mutation p.A39V 0.12 deleterious(0.02) possibly_damaging(0.688) TCGA-DK-AA6T-01 19 19745456 19745456 C G GMIP Missense_Mutation p.K648N 0.39 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6T-01 19 2438182 2438182 G C LMNB2 Missense_Mutation p.F221L 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-DK-AA6T-01 19 36940238 36940238 G C ZNF566 Missense_Mutation p.Q301E 0.31 tolerated(0.45) possibly_damaging(0.764) TCGA-DK-AA6T-01 19 50162957 50162957 T G IRF3 Silent p.L416L 0.42 TCGA-DK-AA6T-01 19 53086957 53086957 T G ZNF701 3'UTR 0.35 TCGA-DK-AA6T-01 19 55147149 55147149 C G LILRB1 Intron 0.43 TCGA-DK-AA6T-01 1 145293471 145293471 G C NBPF10 Missense_Mutation p.E22D 0.08 benign(0.013) TCGA-DK-AA6T-01 1 207271519 207271519 G C C4BPB Missense_Mutation p.E176D 0.51 tolerated(0.63) benign(0.003) TCGA-DK-AA6T-01 1 220179552 220179552 C T EPRS Missense_Mutation p.A616T 0.30 tolerated(0.13) benign(0.093) TCGA-DK-AA6T-01 1 246823529 246823529 T C CNST Missense_Mutation p.I622T 0.54 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6T-01 1 53927225 53927225 G A DMRTB1 Silent p.P219P 0.35 TCGA-DK-AA6T-01 1 62237148 62237148 C G INADL Missense_Mutation p.H190Q 0.32 tolerated(0.18) benign(0.045) TCGA-DK-AA6T-01 1 9775912 9775912 C G PIK3CD Missense_Mutation p.H126D 0.40 deleterious(0) possibly_damaging(0.904) TCGA-DK-AA6T-01 20 55840815 55840815 G A BMP7 Nonsense_Mutation p.Q122* 0.57 TCGA-DK-AA6T-01 20 55840819 55840819 G A BMP7 Silent p.S120S 0.54 TCGA-DK-AA6T-01 20 58514322 58514322 C G PPP1R3D Missense_Mutation p.R222P 0.43 tolerated(0.23) probably_damaging(0.91) TCGA-DK-AA6T-01 20 6021797 6021797 G A LRRN4 Silent p.T698T 0.46 TCGA-DK-AA6T-01 22 22724338 22724338 G C IGLV7-46 Missense_Mutation p.W78C 0.39 TCGA-DK-AA6T-01 22 22724423 22724423 T G IGLV7-46 Missense_Mutation p.Y107D 0.28 TCGA-DK-AA6T-01 22 22724431 22724431 C G IGLV7-46 Missense_Mutation p.C109W 0.33 TCGA-DK-AA6T-01 22 22730716 22730716 T G IGLV5-45 Missense_Mutation p.Y71D 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-DK-AA6T-01 22 22749617 22749617 A G IGLV7-43 Silent p.A47A 0.22 TCGA-DK-AA6T-01 22 22749796 22749796 A G IGLV7-43 Missense_Mutation p.Y107C 0.30 deleterious(0.01) benign(0.382) TCGA-DK-AA6T-01 22 23213919 23213919 C T IGLV4-3 Missense_Mutation p.P26S 0.61 tolerated(0.31) benign(0.02) TCGA-DK-AA6T-01 22 23223297 23223297 C T IGLV3-1 Silent p.L23L 0.36 TCGA-DK-AA6T-01 22 23223381 23223389 GCTTGCTGG ACTTATTGC IGLV3-1 Missense_Mutation p.ACW51TYC 0.38 TCGA-DK-AA6T-01 22 23223419 23223419 G A IGLV3-1 Silent p.V63V 0.55 TCGA-DK-AA6T-01 22 23223439 23223439 G C IGLV3-1 Missense_Mutation p.S70T 0.55 tolerated(0.13) benign(0.008) TCGA-DK-AA6T-01 22 23223511 23223511 G C IGLV3-1 Missense_Mutation p.S94T 0.59 tolerated(0.33) benign(0.112) TCGA-DK-AA6T-01 22 23223523 23223523 C T IGLV3-1 Missense_Mutation p.A98V 0.65 deleterious(0.04) benign(0.324) TCGA-DK-AA6T-01 22 23248700 23248700 A G IGLC3 Missense_Mutation p.N64D 0.32 benign(0.082) TCGA-DK-AA6T-01 22 24086730 24086730 C G ZNF70 Missense_Mutation p.E200Q 0.50 tolerated(0.18) probably_damaging(0.997) TCGA-DK-AA6T-01 22 39122410 39122410 C T GTPBP1 Missense_Mutation p.R456W 0.09 deleterious(0.02) probably_damaging(0.985) TCGA-DK-AA6T-01 22 39441047 39441047 A C APOBEC3F Silent p.V91V 0.59 TCGA-DK-AA6T-01 22 42524897 42524897 C G CYP2D6 Silent p.V185V 0.21 TCGA-DK-AA6T-01 2 238277575 238277575 C T COL6A3 Missense_Mutation p.G1511R 0.32 probably_damaging(1) TCGA-DK-AA6T-01 2 37483802 37483802 T C PRKD3 Intron 0.26 TCGA-DK-AA6T-01 2 60780359 60780359 T G BCL11A Missense_Mutation p.E16A 0.29 tolerated_low_confidence(0.11) possibly_damaging(0.824) TCGA-DK-AA6T-01 2 61198655 61198655 T G PUS10 Intron 0.24 TCGA-DK-AA6T-01 2 89160424 89160424 C G IGKJ4 Missense_Mutation p.G4A 0.53 benign(0.169) TCGA-DK-AA6T-01 2 89185474 89185474 G C IGKV4-1 Missense_Mutation p.K56N 0.68 tolerated(0.27) benign(0.008) TCGA-DK-AA6T-01 2 89185477 89185477 C T IGKV4-1 Silent p.N57N 0.72 TCGA-DK-AA6T-01 2 89197019 89197019 A G IGKV5-2 Missense_Mutation p.T22A 0.69 deleterious(0.01) benign(0.034) TCGA-DK-AA6T-01 2 89197076 89197076 A C IGKV5-2 Missense_Mutation p.I41L 0.62 tolerated(0.16) benign(0.026) TCGA-DK-AA6T-01 2 89197141 89197141 A G IGKV5-2 Silent p.E62E 0.53 TCGA-DK-AA6T-01 3 123166615 123166615 G C ADCY5 Missense_Mutation p.H260D 0.46 deleterious(0.02) possibly_damaging(0.811) TCGA-DK-AA6T-01 4 103988643 103988643 G A SLC9B2 Missense_Mutation p.T22M 0.30 tolerated(0.13) benign(0.437) TCGA-DK-AA6T-01 4 13602997 13602997 A T BOD1L1 Missense_Mutation p.L1843I 0.44 benign(0.051) TCGA-DK-AA6T-01 5 127730942 127730942 C T FBN2 Silent p.S368S 0.37 TCGA-DK-AA6T-01 5 40972561 40972561 C G C7 Missense_Mutation p.P647A 0.34 tolerated(0.33) benign(0.02) TCGA-DK-AA6T-01 5 68588043 68588043 C T CCDC125 Nonsense_Mutation p.W357* 0.30 TCGA-DK-AA6T-01 6 17834270 17834270 G A KIF13A Silent p.L396L 0.44 TCGA-DK-AA6T-01 6 43021973 43021973 A G MRPL2 3'UTR 0.43 TCGA-DK-AA6T-01 6 43021998 43021998 A G MRPL2 3'UTR 0.56 TCGA-DK-AA6T-01 6 66205326 66205326 G C EYS 5'UTR 0.47 TCGA-DK-AA6T-01 7 100732419 100732419 G C TRIM56 Missense_Mutation p.G609A 0.25 tolerated(0.19) probably_damaging(0.999) TCGA-DK-AA6T-01 7 100815663 100815663 G C NAT16 Missense_Mutation p.D269E 0.27 tolerated(0.07) benign(0.139) TCGA-DK-AA6T-01 7 149529936 149529936 G A SSPO RNA 0.55 TCGA-DK-AA6T-01 7 23351942 23351942 T A IGF2BP3 3'UTR 0.30 TCGA-DK-AA6T-01 7 33427661 33427661 C T BBS9 Missense_Mutation p.R674W 0.39 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6T-01 7 6465739 6465739 T G DAGLB Missense_Mutation p.R312S 0.29 tolerated(0.46) benign(0.11) TCGA-DK-AA6T-01 7 82595143 82595143 G C PCLO Missense_Mutation p.P1321A 0.45 unknown(0) TCGA-DK-AA6T-01 7 82997071 82997071 C G SEMA3E Missense_Mutation p.S720T 0.22 deleterious(0.05) benign(0.37) TCGA-DK-AA6T-01 7 84651827 84651827 A C SEMA3D Missense_Mutation p.Y432D 0.28 tolerated(0.05) probably_damaging(0.98) TCGA-DK-AA6T-01 8 144688646 144688651 GCCACT - PYCRL In_Frame_Del p.S191_G192del 0.17 TCGA-DK-AA6T-01 8 144940303 144940303 G C EPPK1 Missense_Mutation p.N2373K 0.05 benign(0.248) TCGA-DK-AA6T-01 8 21997593 21997593 G C REEP4 Missense_Mutation p.F62L 0.37 tolerated(0.07) benign(0.1) TCGA-DK-AA6T-01 8 52320896 52320896 C A PXDNL Silent p.G1096G 0.42 TCGA-DK-AA6T-01 9 104124691 104124691 C T BAAT 3'UTR 0.46 TCGA-DK-AA6T-01 9 104433030 104433030 T C GRIN3A Missense_Mutation p.D555G 0.33 deleterious(0.03) possibly_damaging(0.66) TCGA-DK-AA6T-01 9 130166057 130166057 C G SLC2A8 Missense_Mutation p.T281S 0.29 tolerated(0.48) benign(0.006) TCGA-DK-AA6T-01 9 135985048 135985048 G A RALGDS Silent p.S183S 0.09 TCGA-DK-AA6T-01 9 136198951 136198951 C G SURF6 Silent p.V280V 0.43 TCGA-DK-AA6T-01 9 139327638 139327638 G C INPP5E Missense_Mutation p.F376L 0.44 tolerated(0.18) possibly_damaging(0.497) TCGA-DK-AA6T-01 9 140807667 140807667 G A CACNA1B Missense_Mutation p.R189Q 0.32 deleterious(0) benign(0.16) TCGA-DK-AA6T-01 9 33469023 33469023 G A NOL6 Missense_Mutation p.S320L 0.33 deleterious(0.03) benign(0.009) TCGA-DK-AA6T-01 9 93637076 93637076 G T SYK Nonsense_Mutation p.E376* 0.34 TCGA-DK-AA6T-01 X 120008748 120008748 A T CT47B1 Splice_Site p.X259_splice 0.81 TCGA-DK-AA6T-01 X 147743505 147743505 C G AFF2 Missense_Mutation p.T86S 0.74 deleterious(0.02) benign(0.171) TCGA-DK-AA6T-01 X 1540689 1540689 G C ASMTL Silent p.G369G 0.32 TCGA-DK-AA6U-01 10 102763640 102763640 G A LZTS2 Missense_Mutation p.R262Q 0.18 tolerated(0.09) possibly_damaging(0.454) TCGA-DK-AA6U-01 10 122664181 122664181 G T WDR11 Silent p.L1017L 0.36 TCGA-DK-AA6U-01 10 127724818 127724818 G T ADAM12 Missense_Mutation p.P812H 0.59 deleterious(0.04) benign(0.021) TCGA-DK-AA6U-01 10 134006279 134006279 C A DPYSL4 Silent p.G82G 0.72 TCGA-DK-AA6U-01 10 44053481 44053481 C G ZNF239 Missense_Mutation p.R16P 0.09 tolerated_low_confidence(0.2) benign(0) TCGA-DK-AA6U-01 10 55566554 55566554 G A PCDH15 Silent p.L1611L 0.18 TCGA-DK-AA6U-01 10 61122213 61122213 G C FAM13C Missense_Mutation p.S3C 0.53 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-DK-AA6U-01 10 70333655 70333655 G A TET1 Silent p.E520E 0.16 TCGA-DK-AA6U-01 10 71144134 71144134 G T HK1 Missense_Mutation p.R543L 0.81 deleterious(0) probably_damaging(0.918) TCGA-DK-AA6U-01 10 72536995 72536995 G T TBATA Missense_Mutation p.R202S 0.87 deleterious(0) possibly_damaging(0.855) TCGA-DK-AA6U-01 10 75873960 75873960 G T VCL Missense_Mutation p.A990S 0.80 tolerated(0.08) probably_damaging(0.999) TCGA-DK-AA6U-01 10 79770263 79770263 T C POLR3A Silent p.E536E 0.12 TCGA-DK-AA6U-01 10 871052 871052 A G LARP4B Silent p.R479R 0.04 TCGA-DK-AA6U-01 10 87362240 87362240 G T GRID1 Missense_Mutation p.S940R 0.59 deleterious_low_confidence(0.04) benign(0.004) TCGA-DK-AA6U-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.62 TCGA-DK-AA6U-01 11 105009559 105009559 G C CARD18 Nonsense_Mutation p.S85* 0.10 TCGA-DK-AA6U-01 11 118978727 118978727 C G C2CD2L Silent p.L92L 0.20 TCGA-DK-AA6U-01 11 119243762 119243762 T C USP2 Silent p.Q143Q 0.29 TCGA-DK-AA6U-01 11 121000773 121000773 G A TECTA Missense_Mutation p.V932I 0.12 tolerated(0.07) benign(0.164) TCGA-DK-AA6U-01 11 12261010 12261010 G A MICAL2 Missense_Mutation p.G698S 0.65 tolerated(0.96) benign(0.005) TCGA-DK-AA6U-01 11 123756060 123756060 C T TMEM225 Missense_Mutation p.V25M 0.14 tolerated(0.11) benign(0.001) TCGA-DK-AA6U-01 11 134147635 134147635 G T GLB1L3 Missense_Mutation p.R64L 0.23 deleterious(0) probably_damaging(0.988) TCGA-DK-AA6U-01 11 1959745 1959745 G C TNNT3 3'UTR 0.92 TCGA-DK-AA6U-01 11 27389553 27389553 G A LGR4 Missense_Mutation p.S906F 0.14 deleterious(0) probably_damaging(0.987) TCGA-DK-AA6U-01 11 40135928 40135928 G C LRRC4C Missense_Mutation p.Q639E 0.70 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-DK-AA6U-01 11 49175854 49175854 C T FOLH1 Missense_Mutation p.R605K 0.30 tolerated(1) benign(0) TCGA-DK-AA6U-01 11 55594883 55594883 C T OR5L2 Silent p.L63L 0.16 TCGA-DK-AA6U-01 11 55861706 55861706 T A OR8I2 Missense_Mutation p.L308H 0.47 tolerated(0.22) benign(0.001) TCGA-DK-AA6U-01 11 55890340 55890340 C A OR8H3 Missense_Mutation p.S164R 0.07 tolerated(0.19) benign(0.049) TCGA-DK-AA6U-01 11 56043301 56043301 G A OR5T1 Missense_Mutation p.G63R 0.55 tolerated(0.53) benign(0.009) TCGA-DK-AA6U-01 11 56086421 56086421 A T OR8K3 Silent p.I213I 0.28 TCGA-DK-AA6U-01 11 56344977 56344977 G A OR5M10 Missense_Mutation p.S74F 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6U-01 11 58170010 58170010 C G OR5B3 Missense_Mutation p.R291S 0.36 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-DK-AA6U-01 11 58978315 58978315 G T MPEG1 Missense_Mutation p.A675D 0.53 deleterious(0.01) probably_damaging(0.921) TCGA-DK-AA6U-01 11 60073664 60073664 C A MS4A4A Missense_Mutation p.T213N 0.49 tolerated(1) benign(0) TCGA-DK-AA6U-01 11 60183917 60183917 C A MS4A14 Silent p.T525T 0.36 TCGA-DK-AA6U-01 11 61121366 61121366 C A CYB561A3 Missense_Mutation p.V112F 0.15 deleterious(0) probably_damaging(0.951) TCGA-DK-AA6U-01 11 62398082 62398082 C T GANAB Silent p.K481K 0.05 TCGA-DK-AA6U-01 11 62400085 62400085 G A GANAB Silent p.L338L 0.06 TCGA-DK-AA6U-01 11 6243699 6243699 G A FAM160A2 Silent p.L388L 0.18 TCGA-DK-AA6U-01 11 62491413 62491413 C A HNRNPUL2 Missense_Mutation p.D242Y 0.40 deleterious(0) probably_damaging(0.956) TCGA-DK-AA6U-01 11 64435001 64435001 G T NRXN2 Missense_Mutation p.P507T 0.46 deleterious(0) benign(0) TCGA-DK-AA6U-01 11 64525358 64525358 G A PYGM Missense_Mutation p.R185C 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6U-01 11 65480116 65480116 C T KAT5 Intron 0.33 TCGA-DK-AA6U-01 11 65811006 65811006 G C GAL3ST3 Missense_Mutation p.H90D 0.14 deleterious(0) benign(0.437) TCGA-DK-AA6U-01 11 67413351 67413351 G T ACY3 Missense_Mutation p.P82T 0.53 tolerated(0.56) benign(0.062) TCGA-DK-AA6U-01 11 6977009 6977009 G A ZNF215 Nonsense_Mutation p.W267* 0.12 TCGA-DK-AA6U-01 11 74899191 74899191 C G SLCO2B1 Missense_Mutation p.S328C 0.28 deleterious(0.02) possibly_damaging(0.868) TCGA-DK-AA6U-01 11 75139638 75139638 G A KLHL35 Silent p.I305I 0.08 TCGA-DK-AA6U-01 11 76831829 76831829 C T CAPN5 Missense_Mutation p.S454L 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-DK-AA6U-01 11 85445776 85445776 G A SYTL2 Missense_Mutation p.S198L 0.53 tolerated(0.39) benign(0.005) TCGA-DK-AA6U-01 11 93122223 93122223 G C CCDC67 Missense_Mutation p.E325Q 0.18 tolerated(0.07) benign(0.312) TCGA-DK-AA6U-01 12 104129317 104129317 G T STAB2 Missense_Mutation p.G1837C 0.16 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 12 105198989 105198989 C G SLC41A2 Missense_Mutation p.A555P 0.36 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6U-01 12 112509733 112509733 T C NAA25 Silent p.L334L 0.43 TCGA-DK-AA6U-01 12 116972650 116972650 G A LINC00173 RNA 0.31 TCGA-DK-AA6U-01 12 121175658 121175658 G A ACADS Missense_Mutation p.G164E 0.14 deleterious(0) possibly_damaging(0.803) TCGA-DK-AA6U-01 12 124911244 124911244 C G NCOR2 Missense_Mutation p.D418H 0.39 unknown(0) TCGA-DK-AA6U-01 12 20787878 20787878 A G PDE3A Missense_Mutation p.N630S 0.05 tolerated(0.49) possibly_damaging(0.519) TCGA-DK-AA6U-01 12 29608201 29608201 C T OVCH1 Nonsense_Mutation p.W806* 0.14 TCGA-DK-AA6U-01 12 310988 310988 G A SLC6A12 Missense_Mutation p.S173L 0.20 tolerated(0.07) possibly_damaging(0.572) TCGA-DK-AA6U-01 12 32903776 32903776 G A YARS2 Missense_Mutation p.P327L 0.45 tolerated(0.38) benign(0.011) TCGA-DK-AA6U-01 12 4737187 4737187 G C AKAP3 Missense_Mutation p.S294C 0.16 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 12 49396747 49396747 C G PRKAG1 Missense_Mutation p.G320R 0.32 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 12 49444684 49444684 G A KMT2D Nonsense_Mutation p.Q928* 0.15 TCGA-DK-AA6U-01 12 49448439 49448439 C T KMT2D Nonsense_Mutation p.W91* 0.33 TCGA-DK-AA6U-01 12 50367219 50367219 C A AQP6 Missense_Mutation p.A88D 0.36 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 12 53517884 53517884 C A SOAT2 Silent p.R516R 0.11 TCGA-DK-AA6U-01 12 56755363 56755363 C G APOF Missense_Mutation p.K209N 0.14 deleterious(0.04) probably_damaging(0.954) TCGA-DK-AA6U-01 12 57919496 57919496 C A MBD6 Missense_Mutation p.H249N 0.11 tolerated_low_confidence(0.19) unknown(0) TCGA-DK-AA6U-01 12 58131264 58131264 C A AGAP2 Missense_Mutation p.V256F 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-DK-AA6U-01 12 80199402 80199402 G A PPP1R12A Missense_Mutation p.S657F 0.33 tolerated(0.1) possibly_damaging(0.804) TCGA-DK-AA6U-01 13 108881678 108881678 C T ABHD13 Missense_Mutation p.H38Y 0.12 tolerated(0.77) benign(0.014) TCGA-DK-AA6U-01 13 25030583 25030583 C T PARP4 Missense_Mutation p.E820K 0.08 tolerated(0.14) benign(0.024) TCGA-DK-AA6U-01 13 25457366 25457366 C T CENPJ Silent p.R1322R 0.18 TCGA-DK-AA6U-01 13 27256995 27256995 C T WASF3 Missense_Mutation p.S412F 0.10 deleterious(0.02) benign(0.347) TCGA-DK-AA6U-01 13 45980021 45980021 C G SLC25A30 Missense_Mutation p.E102Q 0.33 tolerated(0.18) possibly_damaging(0.529) TCGA-DK-AA6U-01 13 58207399 58207399 G A PCDH17 Missense_Mutation p.S240N 0.35 tolerated(0.44) benign(0.029) TCGA-DK-AA6U-01 13 84453968 84453968 C T SLITRK1 Missense_Mutation p.E559K 0.10 tolerated(0.34) benign(0.021) TCGA-DK-AA6U-01 14 19553776 19553776 G A POTEG Nonsense_Mutation p.W120* 0.11 TCGA-DK-AA6U-01 14 57938114 57938114 C G C14orf105 Missense_Mutation p.E284Q 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-DK-AA6U-01 14 68274472 68274472 C G ZFYVE26 Missense_Mutation p.E177Q 0.04 tolerated(0.56) benign(0.001) TCGA-DK-AA6U-01 14 69256778 69256783 GGTGTG - ZFP36L1 In_Frame_Del p.H162_T163del 0.65 TCGA-DK-AA6U-01 14 88652467 88652467 C - KCNK10 Frame_Shift_Del p.W348* 0.43 TCGA-DK-AA6U-01 14 95670147 95670147 C G CLMN Missense_Mutation p.E513D 0.14 tolerated_low_confidence(0.07) benign(0.036) TCGA-DK-AA6U-01 15 22332643 22332643 C T RP11-69H14.6 RNA 0.37 TCGA-DK-AA6U-01 15 25430791 25430791 G A SNORD115-9 RNA 0.08 TCGA-DK-AA6U-01 15 34395936 34395936 G C PGBD4 Missense_Mutation p.D402H 0.11 tolerated(0.12) benign(0.294) TCGA-DK-AA6U-01 15 41195241 41195241 A G VPS18 Missense_Mutation p.H875R 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 15 44066396 44066396 C A ELL3 Missense_Mutation p.G341V 0.08 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 15 44705539 44705539 G A CASC4 Missense_Mutation p.E416K 0.07 tolerated(0.06) benign(0.247) TCGA-DK-AA6U-01 15 48064086 48064086 G T SEMA6D 3'UTR 0.30 TCGA-DK-AA6U-01 15 48729537 48729537 G T FBN1 Missense_Mutation p.P2121T 0.44 benign(0.001) TCGA-DK-AA6U-01 15 48782133 48782133 T C FBN1 Silent p.R999R 0.48 TCGA-DK-AA6U-01 15 56686886 56686886 C G TEX9 Missense_Mutation p.Q228E 0.14 deleterious(0.03) benign(0.067) TCGA-DK-AA6U-01 15 57526295 57526296 - T TCF12 Frame_Shift_Ins p.L343Ffs*8 0.11 TCGA-DK-AA6U-01 15 65499184 65499184 G A CILP Silent p.L120L 0.10 TCGA-DK-AA6U-01 15 72432397 72432397 G A SENP8 Missense_Mutation p.D145N 0.54 tolerated(0.5) benign(0.001) TCGA-DK-AA6U-01 15 72875563 72875563 G T ARIH1 Missense_Mutation p.R535L 0.14 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6U-01 15 75499330 75499330 G C C15orf39 Missense_Mutation p.G314A 0.39 tolerated(0.05) possibly_damaging(0.899) TCGA-DK-AA6U-01 15 76206478 76206478 C T FBXO22 Missense_Mutation p.A132V 0.16 tolerated(0.41) possibly_damaging(0.808) TCGA-DK-AA6U-01 15 90431785 90431785 C T AP3S2 Missense_Mutation p.E81K 0.13 deleterious(0) probably_damaging(0.973) TCGA-DK-AA6U-01 15 90611643 90611646 ACCT - ZNF710 Frame_Shift_Del p.H425Rfs*63 0.55 TCGA-DK-AA6U-01 16 19627440 19627440 G C C16orf62 Missense_Mutation p.G432A 0.04 tolerated(0.05) possibly_damaging(0.487) TCGA-DK-AA6U-01 16 21008761 21008761 C G DNAH3 Missense_Mutation p.E2149Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-DK-AA6U-01 16 2279640 2279640 C T E4F1 Silent p.L127L 0.12 TCGA-DK-AA6U-01 16 23706103 23706103 G C ERN2 Silent p.G730G 0.33 TCGA-DK-AA6U-01 16 23706109 23706109 G A ERN2 Silent p.I728I 0.33 TCGA-DK-AA6U-01 16 239864 239864 G A LUC7L Intron 0.18 TCGA-DK-AA6U-01 16 29853403 29853403 C T MVP Missense_Mutation p.A535V 0.16 deleterious(0.02) benign(0.034) TCGA-DK-AA6U-01 16 30103958 30103958 G C YPEL3 3'UTR 0.38 TCGA-DK-AA6U-01 16 31332824 31332824 C G ITGAM Missense_Mutation p.F627L 0.46 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 16 31374033 31374033 T C ITGAX Missense_Mutation p.S440P 0.11 tolerated(0.13) benign(0) TCGA-DK-AA6U-01 16 31477702 31477702 C T ARMC5 Missense_Mutation p.S767L 0.09 tolerated(0.33) benign(0.041) TCGA-DK-AA6U-01 16 3820720 3820720 G A CREBBP Nonsense_Mutation p.Q911* 0.48 TCGA-DK-AA6U-01 16 48385495 48385495 G A LONP2 Missense_Mutation p.G781S 0.09 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 16 4882220 4882220 C T GLYR1 Silent p.T99T 0.10 TCGA-DK-AA6U-01 16 5046911 5046911 A C SEC14L5 Missense_Mutation p.D279A 0.40 tolerated(0.11) benign(0.032) TCGA-DK-AA6U-01 16 53281416 53281416 G C CHD9 Splice_Site p.X1222_splice 0.33 TCGA-DK-AA6U-01 16 53487411 53487411 C G RBL2 Missense_Mutation p.P272A 0.17 tolerated(0.27) benign(0.029) TCGA-DK-AA6U-01 16 57690423 57690423 C G GPR56 Intron 0.30 TCGA-DK-AA6U-01 16 58757647 58757647 C T GOT2 Intron 0.50 TCGA-DK-AA6U-01 16 67000659 67000659 G T CES3 Missense_Mutation p.G318V 0.19 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6U-01 16 69370470 69370470 G C COG8 Missense_Mutation p.L175V 0.51 deleterious(0) probably_damaging(0.98) TCGA-DK-AA6U-01 16 716773 716773 A G WDR90 Missense_Mutation p.Y1662C 0.31 deleterious(0) probably_damaging(0.985) TCGA-DK-AA6U-01 16 72159890 72159890 C T PMFBP1 Missense_Mutation p.D744N 0.15 deleterious(0.03) benign(0.182) TCGA-DK-AA6U-01 16 87936104 87936104 G T CA5A Missense_Mutation p.S161Y 0.07 deleterious(0) probably_damaging(0.964) TCGA-DK-AA6U-01 16 89805061 89805061 C G FANCA Missense_Mutation p.R1439T 0.55 tolerated(0.13) benign(0.227) TCGA-DK-AA6U-01 17 18832198 18832198 C A PRPSAP2 Silent p.I293I 0.08 TCGA-DK-AA6U-01 17 27822737 27822737 G A TAOK1 Missense_Mutation p.E331K 0.57 tolerated(0.16) benign(0.15) TCGA-DK-AA6U-01 17 27975258 27975258 C T SSH2 Missense_Mutation p.R417Q 0.10 tolerated(0.15) possibly_damaging(0.748) TCGA-DK-AA6U-01 17 30348998 30348998 C G LRRC37B Missense_Mutation p.S278C 0.04 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6U-01 17 30632431 30632431 G A RHBDL3 Missense_Mutation p.V285I 0.09 tolerated(0.12) benign(0.009) TCGA-DK-AA6U-01 17 33454200 33454200 G A FNDC8 Missense_Mutation p.E117K 0.13 deleterious_low_confidence(0.04) benign(0.087) TCGA-DK-AA6U-01 17 35872588 35872588 G C DUSP14 Missense_Mutation p.E72Q 0.24 tolerated(0.76) benign(0.042) TCGA-DK-AA6U-01 17 39394313 39394313 T G KRTAP9-8 Missense_Mutation p.C4G 0.17 deleterious(0) unknown(0) TCGA-DK-AA6U-01 17 40845507 40845507 C T CNTNAP1 Missense_Mutation p.T982M 0.11 tolerated(0.06) probably_damaging(0.945) TCGA-DK-AA6U-01 17 43910506 43910506 G T CRHR1 Missense_Mutation p.C287F 0.63 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6U-01 17 53084946 53084946 G A STXBP4 Silent p.E218E 0.24 TCGA-DK-AA6U-01 17 54230868 54230868 C T ANKFN1 5'UTR 0.11 TCGA-DK-AA6U-01 17 56581515 56581515 G A MTMR4 Nonsense_Mutation p.R518* 0.10 TCGA-DK-AA6U-01 17 66925281 66925281 C T ABCA8 Missense_Mutation p.G345E 0.61 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6U-01 17 7259714 7259714 G T TMEM95 Missense_Mutation p.S146I 0.67 deleterious(0.01) possibly_damaging(0.607) TCGA-DK-AA6U-01 17 74387073 74387083 CGGAACTGCGT - UBE2O Frame_Shift_Del p.T1274Gfs*79 0.28 TCGA-DK-AA6U-01 17 74936591 74936591 C G MGAT5B Silent p.L573L 0.12 TCGA-DK-AA6U-01 17 75187337 75187337 G T SEC14L1 Missense_Mutation p.E96D 0.38 tolerated(0.12) benign(0.074) TCGA-DK-AA6U-01 17 7579374 7579374 C A TP53 Missense_Mutation p.G105C 0.71 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 17 76447593 76447593 G A DNAH17 Silent p.A3550A 0.41 TCGA-DK-AA6U-01 17 76814848 76814850 CTT - USP36 In_Frame_Del p.K308del 0.41 TCGA-DK-AA6U-01 17 77709310 77709310 G T ENPP7 Nonsense_Mutation p.E290* 0.20 TCGA-DK-AA6U-01 17 77758355 77758355 T G CBX2 Silent p.L371L 0.33 TCGA-DK-AA6U-01 17 79225068 79225068 G A SLC38A10 Intron 0.37 TCGA-DK-AA6U-01 17 8738751 8738751 C T PIK3R6 Missense_Mutation p.E162K 0.14 tolerated(0.09) benign(0.253) TCGA-DK-AA6U-01 18 21083561 21083561 C T C18orf8 5'UTR 0.11 TCGA-DK-AA6U-01 18 21723365 21723365 C T CABYR Missense_Mutation p.H63Y 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-DK-AA6U-01 18 22807128 22807128 C T ZNF521 Missense_Mutation p.E252K 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-DK-AA6U-01 18 29038998 29038998 C T DSG3 Silent p.I125I 0.12 TCGA-DK-AA6U-01 18 29867305 29867305 C T GAREM Missense_Mutation p.D419N 0.11 deleterious(0.04) benign(0.439) TCGA-DK-AA6U-01 18 3067474 3067474 G A MYOM1 Missense_Mutation p.S1615L 0.05 tolerated(0.63) benign(0.31) TCGA-DK-AA6U-01 18 43212369 43212369 G A SLC14A2 Silent p.L192L 0.06 TCGA-DK-AA6U-01 18 44560135 44560135 C A TCEB3B Missense_Mutation p.A501S 0.10 tolerated(0.15) benign(0.183) TCGA-DK-AA6U-01 18 47803368 47803368 C T MBD1 Missense_Mutation p.A76T 0.59 tolerated(0.4) benign(0.007) TCGA-DK-AA6U-01 18 47917614 47917614 C T SKA1 Silent p.T190T 0.22 TCGA-DK-AA6U-01 18 55359071 55359071 G C ATP8B1 Silent p.L396L 0.07 TCGA-DK-AA6U-01 18 67671330 67671330 C T RTTN 3'UTR 0.15 TCGA-DK-AA6U-01 18 6912185 6912185 A G ARHGAP28 3'UTR 0.47 TCGA-DK-AA6U-01 18 7036027 7036027 C T LAMA1 Missense_Mutation p.V600I 0.29 tolerated(0.18) benign(0.315) TCGA-DK-AA6U-01 18 74153302 74153302 C T ZNF516 Missense_Mutation p.S570N 0.30 deleterious(0.04) possibly_damaging(0.559) TCGA-DK-AA6U-01 19 10124102 10124102 G A RDH8 5'UTR 0.29 TCGA-DK-AA6U-01 19 10129508 10129508 G C RDH8 Missense_Mutation p.V142L 0.55 tolerated(0.7) benign(0.174) TCGA-DK-AA6U-01 19 10254594 10254594 G C DNMT1 Missense_Mutation p.H988Q 0.47 tolerated(0.07) benign(0.32) TCGA-DK-AA6U-01 19 10572257 10572257 G C PDE4A Silent p.L507L 0.46 TCGA-DK-AA6U-01 19 12817103 12817103 A T TNPO2 Missense_Mutation p.F525L 0.24 tolerated(0.09) benign(0.009) TCGA-DK-AA6U-01 19 13325057 13325057 C G CACNA1A Missense_Mutation p.R1977P 0.35 possibly_damaging(0.655) TCGA-DK-AA6U-01 19 18092653 18092653 C T KCNN1 Missense_Mutation p.R212W 0.53 deleterious(0) possibly_damaging(0.776) TCGA-DK-AA6U-01 19 21366260 21366260 C G ZNF431 Nonsense_Mutation p.S385* 0.13 TCGA-DK-AA6U-01 19 21366638 21366638 C G ZNF431 Missense_Mutation p.S511C 0.14 deleterious(0.01) probably_damaging(0.913) TCGA-DK-AA6U-01 19 3198862 3198862 C T NCLN Silent p.I221I 0.19 TCGA-DK-AA6U-01 19 38969170 38969170 G T RYR1 Missense_Mutation p.C1517F 0.46 probably_damaging(1) TCGA-DK-AA6U-01 19 39398113 39398113 G C NFKBIB Silent p.L261L 0.48 TCGA-DK-AA6U-01 19 42083606 42083606 C T CEACAM21 Missense_Mutation p.S40L 0.37 tolerated(0.05) possibly_damaging(0.752) TCGA-DK-AA6U-01 19 42583494 42583494 G T ZNF574 Nonsense_Mutation p.E246* 0.57 TCGA-DK-AA6U-01 19 42880101 42880101 C G MEGF8 Missense_Mutation p.P2504R 0.44 tolerated(0.31) benign(0.096) TCGA-DK-AA6U-01 19 4501316 4501316 G A HDGFRP2 Missense_Mutation p.E640K 0.08 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-DK-AA6U-01 19 48607900 48607900 C T PLA2G4C Missense_Mutation p.E78K 0.30 tolerated(0.57) benign(0.051) TCGA-DK-AA6U-01 19 49692247 49692247 C T TRPM4 Missense_Mutation p.R640C 0.44 deleterious(0.04) possibly_damaging(0.696) TCGA-DK-AA6U-01 19 49967484 49967484 G A ALDH16A1 Missense_Mutation p.S432N 0.63 deleterious(0) probably_damaging(0.944) TCGA-DK-AA6U-01 19 50455625 50455625 C A SIGLEC11 Missense_Mutation p.G560C 0.63 tolerated(0.14) possibly_damaging(0.527) TCGA-DK-AA6U-01 19 51205763 51205763 C T SHANK1 Missense_Mutation p.E570K 0.20 possibly_damaging(0.881) TCGA-DK-AA6U-01 19 51561905 51561905 C A KLK13 Missense_Mutation p.A179S 0.51 deleterious(0.03) probably_damaging(0.965) TCGA-DK-AA6U-01 19 51850245 51850245 C A ETFB Missense_Mutation p.G260V 0.17 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-DK-AA6U-01 19 52909830 52909830 C T ZNF528 Silent p.L69L 0.06 TCGA-DK-AA6U-01 19 53014785 53014785 C G ZNF578 Nonsense_Mutation p.S384* 0.35 TCGA-DK-AA6U-01 19 53669401 53669401 C A ZNF665 Missense_Mutation p.M114I 0.05 tolerated(0.27) benign(0.002) TCGA-DK-AA6U-01 19 54721344 54721344 C T LILRB3 Silent p.Q532Q 0.09 TCGA-DK-AA6U-01 19 54745718 54745718 C A LILRA6 Missense_Mutation p.S131I 0.18 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6U-01 19 55014038 55014038 G A LAIR2 5'UTR 0.41 TCGA-DK-AA6U-01 19 55176608 55176608 C A LILRB4 Missense_Mutation p.P245H 0.59 deleterious(0) possibly_damaging(0.541) TCGA-DK-AA6U-01 19 55451444 55451444 A G NLRP7 Missense_Mutation p.I248T 0.50 deleterious(0) benign(0.41) TCGA-DK-AA6U-01 19 55966382 55966382 C T ISOC2 Missense_Mutation p.D187N 0.09 deleterious(0.03) possibly_damaging(0.599) TCGA-DK-AA6U-01 19 56244110 56244110 T A NLRP9 Missense_Mutation p.N363Y 0.52 deleterious(0.01) possibly_damaging(0.851) TCGA-DK-AA6U-01 19 56466877 56466877 A G NLRP8 Missense_Mutation p.T485A 0.05 tolerated(0.82) benign(0) TCGA-DK-AA6U-01 19 57888495 57888495 G A ZNF547 Splice_Site p.X51_splice 0.58 TCGA-DK-AA6U-01 19 57967542 57967542 G C VN1R1 Missense_Mutation p.Q105E 0.47 tolerated(0.06) possibly_damaging(0.838) TCGA-DK-AA6U-01 19 7168032 7168032 G T INSR Nonsense_Mutation p.Y519* 0.31 TCGA-DK-AA6U-01 19 8038682 8038682 C T ELAVL1 Silent p.Q119Q 0.20 TCGA-DK-AA6U-01 19 8616632 8616632 C T MYO1F Missense_Mutation p.E255K 0.19 deleterious(0.01) possibly_damaging(0.783) TCGA-DK-AA6U-01 19 881651 881651 C T MED16 Missense_Mutation p.R350H 0.10 deleterious(0.04) possibly_damaging(0.6) TCGA-DK-AA6U-01 19 9011341 9011341 C T MUC16 Silent p.R12964R 0.12 TCGA-DK-AA6U-01 19 9048545 9048545 G T MUC16 Nonsense_Mutation p.S11029* 0.55 TCGA-DK-AA6U-01 19 9056559 9056559 C G MUC16 Missense_Mutation p.R10296P 0.15 benign(0) TCGA-DK-AA6U-01 19 9066699 9066699 G T MUC16 Missense_Mutation p.P6916Q 0.46 unknown(0) TCGA-DK-AA6U-01 19 9091676 9091676 C A MUC16 Missense_Mutation p.A47S 0.36 unknown(0) TCGA-DK-AA6U-01 19 9236988 9236988 C T OR7G3 Silent p.G213G 0.13 TCGA-DK-AA6U-01 1 103488406 103488406 G A COL11A1 Silent p.G379G 0.31 TCGA-DK-AA6U-01 1 10363760 10363760 G A KIF1B Intron 0.07 TCGA-DK-AA6U-01 1 110034176 110034176 C G ATXN7L2 Missense_Mutation p.S664C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-AA6U-01 1 11008454 11008454 C A C1orf127 Nonsense_Mutation p.E580* 0.16 TCGA-DK-AA6U-01 1 110301729 110301729 A C EPS8L3 Missense_Mutation p.L139R 0.29 deleterious(0.02) possibly_damaging(0.449) TCGA-DK-AA6U-01 1 111965674 111965674 C T OVGP1 Splice_Site p.X162_splice 0.06 TCGA-DK-AA6U-01 1 114514601 114514601 C A HIPK1 Intron 0.09 TCGA-DK-AA6U-01 1 116666900 116666900 G A MAB21L3 Missense_Mutation p.G135R 0.35 tolerated(0.08) probably_damaging(0.998) TCGA-DK-AA6U-01 1 118530476 118530476 C G SPAG17 Missense_Mutation p.E1884Q 0.05 tolerated(0.18) possibly_damaging(0.49) TCGA-DK-AA6U-01 1 12639357 12639357 G C DHRS3 Silent p.L141L 0.25 TCGA-DK-AA6U-01 1 144904670 144904670 C G PDE4DIP Missense_Mutation p.R881T 0.35 deleterious(0) possibly_damaging(0.81) TCGA-DK-AA6U-01 1 150064444 150064444 G A VPS45 Missense_Mutation p.D438N 0.29 tolerated(0.1) benign(0.077) TCGA-DK-AA6U-01 1 152636813 152636813 C T LCE2D Missense_Mutation p.P78S 0.42 tolerated_low_confidence(0.5) unknown(0) TCGA-DK-AA6U-01 1 153610861 153610861 C T CHTOP Silent p.N52N 0.10 TCGA-DK-AA6U-01 1 156280933 156280933 C T CCT3 Silent p.L403L 0.39 TCGA-DK-AA6U-01 1 156779025 156779025 C T SH2D2A Silent p.K334K 0.12 TCGA-DK-AA6U-01 1 158436062 158436062 C A OR10K1 Silent p.T237T 0.35 TCGA-DK-AA6U-01 1 160264384 160264384 C G COPA Splice_Site p.X865_splice 0.30 TCGA-DK-AA6U-01 1 166927011 166927011 A T ILDR2 Missense_Mutation p.V125D 0.45 deleterious(0) possibly_damaging(0.839) TCGA-DK-AA6U-01 1 1686043 1686043 C T NADK Silent p.E406E 0.47 TCGA-DK-AA6U-01 1 169510461 169510461 G A F5 Silent p.F1289F 0.08 TCGA-DK-AA6U-01 1 169695895 169695895 G C SELE Silent p.L566L 0.37 TCGA-DK-AA6U-01 1 17023340 17023340 C T ESPNP RNA 0.10 TCGA-DK-AA6U-01 1 170513848 170513848 C T GORAB Missense_Mutation p.S200F 0.08 deleterious(0) probably_damaging(0.995) TCGA-DK-AA6U-01 1 17297197 17297197 G T CROCC Missense_Mutation p.D1907Y 0.56 probably_damaging(0.934) TCGA-DK-AA6U-01 1 176671790 176671790 C A PAPPA2 Missense_Mutation p.A1095D 0.31 deleterious(0) possibly_damaging(0.851) TCGA-DK-AA6U-01 1 185902757 185902757 C G HMCN1 Missense_Mutation p.I543M 0.11 benign(0.283) TCGA-DK-AA6U-01 1 18808793 18808793 A T KLHDC7A Missense_Mutation p.T440S 0.17 tolerated(0.49) benign(0.075) TCGA-DK-AA6U-01 1 196971611 196971611 G T CFHR5 Splice_Site p.X383_splice 0.06 TCGA-DK-AA6U-01 1 197029614 197029614 T G F13B Missense_Mutation p.Q229H 0.29 deleterious(0.01) possibly_damaging(0.866) TCGA-DK-AA6U-01 1 197390599 197390599 G T CRB1 Missense_Mutation p.Q547H 0.38 deleterious(0.05) probably_damaging(0.972) TCGA-DK-AA6U-01 1 201380632 201380632 G T TNNI1 Missense_Mutation p.D103E 0.48 tolerated(0.28) probably_damaging(0.988) TCGA-DK-AA6U-01 1 202288124 202288124 C T LGR6 Missense_Mutation p.S898L 0.16 deleterious(0.03) benign(0.018) TCGA-DK-AA6U-01 1 21903056 21903056 A G ALPL Missense_Mutation p.T411A 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6U-01 1 221912583 221912583 C T DUSP10 Silent p.P168P 0.06 TCGA-DK-AA6U-01 1 223989919 223989919 G A TP53BP2 Missense_Mutation p.P375L 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-DK-AA6U-01 1 227920443 227920443 C T SNAP47 5'Flank 0.25 TCGA-DK-AA6U-01 1 228285732 228285732 C G ARF1 3'UTR 0.46 TCGA-DK-AA6U-01 1 23408853 23408853 C T KDM1A Silent p.A813A 0.46 TCGA-DK-AA6U-01 1 234509333 234509333 C G COA6 5'Flank 0.15 TCGA-DK-AA6U-01 1 235599104 235599104 C G TBCE Missense_Mutation p.S261C 0.05 tolerated(0.06) benign(0.021) TCGA-DK-AA6U-01 1 235972605 235972605 C G LYST Missense_Mutation p.E505Q 0.09 tolerated(0.08) probably_damaging(0.99) TCGA-DK-AA6U-01 1 236201407 236201407 C T NID1 Missense_Mutation p.E428K 0.12 deleterious(0.02) possibly_damaging(0.692) TCGA-DK-AA6U-01 1 23782402 23782402 C T ASAP3 Missense_Mutation p.R107H 0.37 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6U-01 1 237947435 237947435 C A RYR2 Missense_Mutation p.S4141R 0.21 probably_damaging(0.983) TCGA-DK-AA6U-01 1 237947793 237947793 C T RYR2 Silent p.L4261L 0.24 TCGA-DK-AA6U-01 1 238050138 238050138 C A ZP4 Nonsense_Mutation p.E258* 0.34 TCGA-DK-AA6U-01 1 24201104 24201104 G T CNR2 Missense_Mutation p.S335Y 0.12 deleterious(0) probably_damaging(0.99) TCGA-DK-AA6U-01 1 24201174 24201174 G C CNR2 Missense_Mutation p.H312D 0.10 tolerated(0.14) benign(0.055) TCGA-DK-AA6U-01 1 24979035 24979035 G T SRRM1 Missense_Mutation p.R279L 0.44 unknown(0) TCGA-DK-AA6U-01 1 31441049 31441050 - T PUM1 Intron 0.10 TCGA-DK-AA6U-01 1 32148967 32148967 C T COL16A1 Missense_Mutation p.E795K 0.12 unknown(0) TCGA-DK-AA6U-01 1 32202082 32202082 C G BAI2 Intron 0.67 TCGA-DK-AA6U-01 1 33985412 33985412 C T CSMD2 Missense_Mutation p.R3435K 0.45 tolerated(0.08) possibly_damaging(0.636) TCGA-DK-AA6U-01 1 42046440 42046440 G C HIVEP3 Silent p.V1343V 0.55 TCGA-DK-AA6U-01 1 44019570 44019570 C A PTPRF Missense_Mutation p.L113M 0.52 tolerated(0.07) benign(0.421) TCGA-DK-AA6U-01 1 53544374 53544374 G A PODN Missense_Mutation p.E446K 0.04 tolerated(0.63) benign(0.102) TCGA-DK-AA6U-01 1 54060292 54060292 G T GLIS1 Missense_Mutation p.T95K 0.24 deleterious(0.03) possibly_damaging(0.47) TCGA-DK-AA6U-01 1 55523735 55523735 G A PCSK9 Missense_Mutation p.E403K 0.14 tolerated(0.24) benign(0.003) TCGA-DK-AA6U-01 1 57383376 57383376 C A C8A Missense_Mutation p.T581K 0.38 deleterious(0) possibly_damaging(0.57) TCGA-DK-AA6U-01 1 60505720 60505720 C A C1orf87 Missense_Mutation p.D206Y 0.24 deleterious(0) possibly_damaging(0.905) TCGA-DK-AA6U-01 1 62739310 62739310 G A KANK4 Missense_Mutation p.S489F 0.13 deleterious(0.01) benign(0.013) TCGA-DK-AA6U-01 1 66838229 66838229 G A PDE4B Silent p.E693E 0.13 TCGA-DK-AA6U-01 1 8074239 8074239 G A ERRFI1 Silent p.F140F 0.08 TCGA-DK-AA6U-01 1 86591630 86591630 C A COL24A1 Missense_Mutation p.R130I 0.12 deleterious(0) benign(0.068) TCGA-DK-AA6U-01 1 883903 883903 C G NOC2L Silent p.L508L 0.24 TCGA-DK-AA6U-01 1 91784691 91784691 A G HFM1 Missense_Mutation p.F919S 0.18 deleterious(0) possibly_damaging(0.9) TCGA-DK-AA6U-01 20 19701739 19701739 C T SLC24A3 Silent p.F630F 0.05 TCGA-DK-AA6U-01 20 21687429 21687429 G C PAX1 Missense_Mutation p.V214L 0.26 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6U-01 20 24524196 24524196 G C SYNDIG1 Missense_Mutation p.E155Q 0.08 tolerated(0.42) benign(0.115) TCGA-DK-AA6U-01 20 24930144 24930144 G A CST7 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0.01) benign(0.058) TCGA-DK-AA6U-01 20 25059384 25059384 G A VSX1 Intron 0.07 TCGA-DK-AA6U-01 20 278758 278758 C T ZCCHC3 Silent p.G177G 0.60 TCGA-DK-AA6U-01 20 2843424 2843424 C G VPS16 Intron 0.23 TCGA-DK-AA6U-01 20 30253731 30253731 G A BCL2L1 3'UTR 0.10 TCGA-DK-AA6U-01 20 32207341 32207341 G C CBFA2T2 Missense_Mutation p.E156Q 0.06 deleterious(0) probably_damaging(0.994) TCGA-DK-AA6U-01 20 32677681 32677681 G A EIF2S2 Missense_Mutation p.S286L 0.13 deleterious(0) benign(0.017) TCGA-DK-AA6U-01 20 36869344 36869344 C A KIAA1755 Missense_Mutation p.A397S 0.33 tolerated(0.68) benign(0.01) TCGA-DK-AA6U-01 20 43541401 43541401 G A PABPC1L Silent p.V98V 0.07 TCGA-DK-AA6U-01 20 43941004 43941004 G T RBPJL Silent p.S196S 0.26 TCGA-DK-AA6U-01 20 44506013 44506013 C T ZSWIM3 Silent p.F272F 0.10 TCGA-DK-AA6U-01 20 44698962 44698962 C G NCOA5 Silent p.V84V 0.11 TCGA-DK-AA6U-01 20 45865139 45865139 G C ZMYND8 Silent p.V883V 0.05 TCGA-DK-AA6U-01 20 50139826 50139826 G A NFATC2 Silent p.I318I 0.10 TCGA-DK-AA6U-01 20 5283312 5283312 C T PROKR2 Missense_Mutation p.V177I 0.24 tolerated(0.18) benign(0.116) TCGA-DK-AA6U-01 20 54948568 54948568 C G AURKA Missense_Mutation p.K250N 0.06 deleterious(0.02) probably_damaging(1) TCGA-DK-AA6U-01 20 57768852 57768852 T A ZNF831 Silent p.P926P 0.19 TCGA-DK-AA6U-01 20 5903378 5903378 C A CHGB Missense_Mutation p.N196K 0.24 tolerated(0.19) possibly_damaging(0.591) TCGA-DK-AA6U-01 20 5932671 5932671 G C MCM8 Missense_Mutation p.E4Q 0.18 tolerated_low_confidence(0.12) benign(0.019) TCGA-DK-AA6U-01 20 5932726 5932726 G C MCM8 Missense_Mutation p.R22T 0.04 deleterious_low_confidence(0) benign(0.21) TCGA-DK-AA6U-01 20 60927405 60927405 C T LAMA5 Missense_Mutation p.D194N 0.29 probably_damaging(0.998) TCGA-DK-AA6U-01 21 15747979 15747979 T A HSPA13 Missense_Mutation p.M248L 0.35 tolerated(0.08) probably_damaging(0.96) TCGA-DK-AA6U-01 21 31691974 31691974 G A KRTAP26-1 Missense_Mutation p.P127L 0.46 tolerated(0.77) benign(0.011) TCGA-DK-AA6U-01 21 32639158 32639158 G A TIAM1 Missense_Mutation p.S44L 0.08 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-DK-AA6U-01 21 34107326 34107326 G A PAXBP1 Missense_Mutation p.H897Y 0.08 tolerated(0.07) benign(0.032) TCGA-DK-AA6U-01 21 35468521 35468521 A C SLC5A3 Missense_Mutation p.S342R 0.52 deleterious(0.03) probably_damaging(0.979) TCGA-DK-AA6U-01 21 38600631 38600631 G A DSCR3 Missense_Mutation p.S184L 0.07 deleterious(0.02) possibly_damaging(0.809) TCGA-DK-AA6U-01 21 45817685 45817685 C T TRPM2 Missense_Mutation p.S663F 0.14 deleterious(0) probably_damaging(0.95) TCGA-DK-AA6U-01 22 19379720 19379720 G C HIRA Missense_Mutation p.I280M 0.16 tolerated(0.17) possibly_damaging(0.762) TCGA-DK-AA6U-01 22 23403998 23403998 A T RTDR1 Missense_Mutation p.V260E 0.12 deleterious(0) probably_damaging(0.966) TCGA-DK-AA6U-01 22 29454843 29454843 G A C22orf31 Nonsense_Mutation p.Q254* 0.20 TCGA-DK-AA6U-01 22 32841967 32841967 C T BPIFC Missense_Mutation p.A131T 0.60 tolerated(0.08) probably_damaging(1) TCGA-DK-AA6U-01 22 33402568 33402568 C G SYN3 Missense_Mutation p.R27P 0.40 deleterious(0) unknown(0) TCGA-DK-AA6U-01 22 36744962 36744962 G C MYH9 Nonsense_Mutation p.S107* 0.33 TCGA-DK-AA6U-01 22 36962431 36962431 G A CACNG2 Silent p.I135I 0.22 TCGA-DK-AA6U-01 22 37771126 37771126 C A ELFN2 Missense_Mutation p.C150F 0.43 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6U-01 22 41513680 41513680 C G EP300 Nonsense_Mutation p.S195* 0.59 TCGA-DK-AA6U-01 22 41556674 41556674 G C EP300 Missense_Mutation p.E1207Q 0.12 probably_damaging(0.92) TCGA-DK-AA6U-01 2 101627948 101627948 G C TBC1D8 Nonsense_Mutation p.S946* 0.13 TCGA-DK-AA6U-01 2 110922154 110922154 C A NPHP1 Missense_Mutation p.R294S 0.26 tolerated(0.47) benign(0.001) TCGA-DK-AA6U-01 2 113832969 113832969 G T IL1F10 3'UTR 0.33 TCGA-DK-AA6U-01 2 131099321 131099321 C T CCDC115 Missense_Mutation p.E73K 0.19 tolerated(0.34) possibly_damaging(0.79) TCGA-DK-AA6U-01 2 138722023 138722023 A C HNMT 5'UTR 0.18 TCGA-DK-AA6U-01 2 138759687 138759687 G A HNMT Missense_Mutation p.E118K 0.19 tolerated(0.11) probably_damaging(0.913) TCGA-DK-AA6U-01 2 154996897 154996897 G A GALNT13 Missense_Mutation p.V64M 0.06 deleterious(0) probably_damaging(0.98) TCGA-DK-AA6U-01 2 160043508 160043508 C G TANC1 Silent p.L905L 0.36 TCGA-DK-AA6U-01 2 167168230 167168230 C A SCN9A Missense_Mutation p.V13F 0.51 tolerated(0.11) benign(0.002) TCGA-DK-AA6U-01 2 167760235 167760235 G T XIRP2 Silent p.V81V 0.38 TCGA-DK-AA6U-01 2 170003313 170003313 G A LRP2 Silent p.F4249F 0.31 TCGA-DK-AA6U-01 2 170471122 170471122 C A PPIG Silent p.I145I 0.49 TCGA-DK-AA6U-01 2 170557671 170557671 G A PHOSPHO2 Missense_Mutation p.E64K 0.11 tolerated(0.19) benign(0.091) TCGA-DK-AA6U-01 2 175265723 175265723 G T SCRN3 Missense_Mutation p.G116V 0.33 deleterious(0) possibly_damaging(0.883) TCGA-DK-AA6U-01 2 176958227 176958227 G T HOXD13 Silent p.V203V 0.44 TCGA-DK-AA6U-01 2 17997869 17997869 C G MSGN1 Missense_Mutation p.D28E 0.33 tolerated(0.1) benign(0.193) TCGA-DK-AA6U-01 2 196738395 196738395 G C DNAH7 Missense_Mutation p.P2104A 0.06 tolerated(0.07) possibly_damaging(0.768) TCGA-DK-AA6U-01 2 202245818 202245818 G A TRAK2 Silent p.S731S 0.71 TCGA-DK-AA6U-01 2 203397313 203397313 C G BMPR2 Silent p.G378G 0.45 TCGA-DK-AA6U-01 2 209358037 209358037 G T PTH2R Missense_Mutation p.D436Y 0.67 deleterious(0) probably_damaging(0.954) TCGA-DK-AA6U-01 2 21238038 21238038 A T APOB Silent p.P1201P 0.45 TCGA-DK-AA6U-01 2 219513490 219513490 T C ZNF142 Missense_Mutation p.T381A 0.65 deleterious(0) benign(0.213) TCGA-DK-AA6U-01 2 227872234 227872234 C T COL4A4 Missense_Mutation p.R1627K 0.17 unknown(0) TCGA-DK-AA6U-01 2 228860334 228860334 G T SPHKAP Missense_Mutation p.P1509T 0.68 tolerated(1) benign(0.103) TCGA-DK-AA6U-01 2 239185835 239185835 C T PER2 Splice_Site p.X77_splice 0.94 TCGA-DK-AA6U-01 2 24222788 24222788 G T UBXN2A 3'UTR 0.36 TCGA-DK-AA6U-01 2 25141527 25141527 C G ADCY3 Silent p.V110V 0.34 TCGA-DK-AA6U-01 2 272238 272238 C T ACP1 Missense_Mutation p.S55F 0.12 tolerated(0.07) benign(0.014) TCGA-DK-AA6U-01 2 28974676 28974676 C A PPP1CB 5'Flank 0.33 TCGA-DK-AA6U-01 2 31484565 31484565 C T EHD3 Silent p.L356L 0.11 TCGA-DK-AA6U-01 2 32842861 32842861 G A BIRC6 Missense_Mutation p.D4822N 0.19 benign(0.11) TCGA-DK-AA6U-01 2 3718758 3718758 C T ALLC Missense_Mutation p.A4V 0.47 tolerated(0.09) possibly_damaging(0.677) TCGA-DK-AA6U-01 2 39065009 39065009 C T DHX57 Missense_Mutation p.E836K 0.37 tolerated(0.2) possibly_damaging(0.468) TCGA-DK-AA6U-01 2 50724640 50724640 C - NRXN1 Frame_Shift_Del p.A944Qfs*15 0.33 TCGA-DK-AA6U-01 2 54482377 54482377 G A TSPYL6 Silent p.F304F 0.12 TCGA-DK-AA6U-01 2 69706135 69706135 A T AAK1 Silent p.T876T 0.36 TCGA-DK-AA6U-01 2 71062897 71062897 C G CD207 Missense_Mutation p.E4Q 0.27 tolerated_low_confidence(0.05) possibly_damaging(0.466) TCGA-DK-AA6U-01 2 71654463 71654463 G C ZNF638 Missense_Mutation p.E1822Q 0.17 tolerated(0.15) possibly_damaging(0.451) TCGA-DK-AA6U-01 2 75061685 75061685 C G HK2 5'UTR 0.27 TCGA-DK-AA6U-01 2 80530011 80530011 C G LRRTM1 Missense_Mutation p.A312P 0.31 deleterious(0) possibly_damaging(0.724) TCGA-DK-AA6U-01 2 89185429 89185429 C G IGKV4-1 Missense_Mutation p.I41M 0.11 tolerated(0.17) benign(0.205) TCGA-DK-AA6U-01 2 90139529 90139529 G C IGKV1D-16 Silent p.L100L 0.29 TCGA-DK-AA6U-01 2 99454632 99454632 G C KIAA1211L Silent p.V63V 0.06 TCGA-DK-AA6U-01 3 100455446 100455446 C T TFG Missense_Mutation p.R203C 0.13 deleterious(0.04) possibly_damaging(0.893) TCGA-DK-AA6U-01 3 101474435 101474435 A T CEP97 Missense_Mutation p.Q297L 0.36 deleterious(0) benign(0.341) TCGA-DK-AA6U-01 3 101520547 101520547 G T NXPE3 Missense_Mutation p.V188F 0.34 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6U-01 3 105572451 105572451 C T CBLB Missense_Mutation p.D76N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6U-01 3 121386961 121386961 C G GOLGB1 Missense_Mutation p.K3127N 0.09 possibly_damaging(0.886) TCGA-DK-AA6U-01 3 126220663 126220663 C T UROC1 Missense_Mutation p.G344D 0.56 tolerated(0.08) benign(0.001) TCGA-DK-AA6U-01 3 130743121 130743121 C G ASTE1 Missense_Mutation p.D344H 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6U-01 3 134873066 134873066 C A EPHB1 Missense_Mutation p.P457Q 0.26 deleterious(0.01) possibly_damaging(0.591) TCGA-DK-AA6U-01 3 134967269 134967269 C T EPHB1 Missense_Mutation p.R870W 0.49 deleterious(0) probably_damaging(0.989) TCGA-DK-AA6U-01 3 137843135 137843135 T A A4GNT Missense_Mutation p.T332S 0.26 tolerated_low_confidence(0.19) benign(0.007) TCGA-DK-AA6U-01 3 138191700 138191700 G A ESYT3 Missense_Mutation p.E746K 0.08 deleterious(0.04) benign(0.312) TCGA-DK-AA6U-01 3 148614568 148614568 A G CPA3 3'UTR 0.63 TCGA-DK-AA6U-01 3 14863068 14863068 G C FGD5 Missense_Mutation p.E830D 0.11 tolerated(0.25) benign(0.012) TCGA-DK-AA6U-01 3 150908620 150908620 C T MED12L Nonsense_Mutation p.R624* 0.20 TCGA-DK-AA6U-01 3 164777732 164777732 C G SI Silent p.V368V 0.14 TCGA-DK-AA6U-01 3 165548141 165548141 T - BCHE Frame_Shift_Del p.G228Efs*34 0.28 TCGA-DK-AA6U-01 3 167750597 167750597 G A GOLIM4 Missense_Mutation p.P296L 0.53 deleterious(0.01) benign(0.36) TCGA-DK-AA6U-01 3 170929006 170929006 C T TNIK Missense_Mutation p.E69K 0.17 deleterious(0) unknown(0) TCGA-DK-AA6U-01 3 172502562 172502562 G A ECT2 Silent p.Q598Q 0.16 TCGA-DK-AA6U-01 3 184100206 184100206 G A CHRD Silent p.R243R 0.50 TCGA-DK-AA6U-01 3 186442900 186442900 C A KNG1 Missense_Mutation p.Q139K 0.58 tolerated(0.27) benign(0.006) TCGA-DK-AA6U-01 3 186442901 186442901 A G KNG1 Missense_Mutation p.Q139R 0.59 tolerated(0.25) benign(0.003) TCGA-DK-AA6U-01 3 187446976 187446976 C T BCL6 Missense_Mutation p.R406Q 0.09 tolerated(0.69) benign(0.009) TCGA-DK-AA6U-01 3 190993107 190993107 C A UTS2B Nonsense_Mutation p.E90* 0.53 TCGA-DK-AA6U-01 3 37340796 37340796 G A GOLGA4 Silent p.E362E 0.44 TCGA-DK-AA6U-01 3 38888499 38888499 C G SCN11A Missense_Mutation p.A1688P 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6U-01 3 42751257 42751257 G C CCDC13 Missense_Mutation p.T636S 0.36 tolerated(0.57) benign(0.006) TCGA-DK-AA6U-01 3 44700550 44700550 G C ZNF35 Missense_Mutation p.S232T 0.39 tolerated(0.06) possibly_damaging(0.856) TCGA-DK-AA6U-01 3 48451868 48451868 T A PLXNB1 Missense_Mutation p.Y1839F 0.36 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6U-01 3 48697021 48697021 G A CELSR3 Missense_Mutation p.S1016F 0.26 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 3 49004677 49004677 C T ARIH2 Silent p.C169C 0.10 TCGA-DK-AA6U-01 3 49012274 49012274 G A ARIH2 Missense_Mutation p.E305K 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-DK-AA6U-01 3 49043284 49043284 G A P4HTM Missense_Mutation p.R444K 0.13 deleterious(0.01) possibly_damaging(0.739) TCGA-DK-AA6U-01 3 49095286 49095286 G A QRICH1 Missense_Mutation p.S116L 0.08 deleterious_low_confidence(0.03) benign(0.32) TCGA-DK-AA6U-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.26 deleterious(0.04) possibly_damaging(0.846) TCGA-DK-AA6U-01 3 49412903 49412903 C G RHOA Missense_Mutation p.E40D 0.28 tolerated(0.21) benign(0.034) TCGA-DK-AA6U-01 3 49454765 49454765 C G AMT 3'UTR 0.44 TCGA-DK-AA6U-01 3 49456695 49456695 C G AMT Missense_Mutation p.E232Q 0.48 deleterious(0.03) probably_damaging(0.998) TCGA-DK-AA6U-01 3 49842377 49842377 G A FAM212A Missense_Mutation p.R274H 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-DK-AA6U-01 3 50324702 50324702 C G LSMEM2 3'UTR 0.36 TCGA-DK-AA6U-01 3 52325025 52325025 G A GLYCTK Missense_Mutation p.E143K 0.13 tolerated(1) benign(0.004) TCGA-DK-AA6U-01 3 52433025 52433025 C G DNAH1 Silent p.L4083L 0.27 TCGA-DK-AA6U-01 3 52433158 52433158 C G DNAH1 Missense_Mutation p.L4128V 0.30 probably_damaging(0.967) TCGA-DK-AA6U-01 3 52947576 52947576 G C SFMBT1 Nonsense_Mutation p.S513* 0.32 TCGA-DK-AA6U-01 3 54914867 54914867 G C CACNA2D3 Missense_Mutation p.R630P 0.15 tolerated(0.38) possibly_damaging(0.826) TCGA-DK-AA6U-01 3 73433738 73433738 G T PDZRN3 Missense_Mutation p.T660N 0.34 tolerated(0.48) benign(0) TCGA-DK-AA6U-01 3 97852309 97852309 C G OR5H1 Silent p.L256L 0.45 TCGA-DK-AA6U-01 3 9986218 9986218 A T CRELD1 3'UTR 0.35 TCGA-DK-AA6U-01 4 111539639 111539639 G A PITX2 Missense_Mutation p.S206F 0.14 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6U-01 4 115544433 115544433 G T UGT8 Missense_Mutation p.D133Y 0.37 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 4 115998164 115998164 C T NDST4 Missense_Mutation p.S10N 0.33 tolerated_low_confidence(0.35) benign(0.04) TCGA-DK-AA6U-01 4 119948389 119948389 G T SYNPO2 Missense_Mutation p.D289Y 0.33 deleterious(0) probably_damaging(0.977) TCGA-DK-AA6U-01 4 129019483 129019483 G C LARP1B Missense_Mutation p.E271Q 0.31 tolerated(0.18) benign(0.12) TCGA-DK-AA6U-01 4 145568050 145568050 C A HHIP Silent p.R75R 0.16 TCGA-DK-AA6U-01 4 146025548 146025548 T C ABCE1 5'UTR 0.12 TCGA-DK-AA6U-01 4 146031255 146031255 G A ABCE1 Missense_Mutation p.D136N 0.17 tolerated(1) benign(0.004) TCGA-DK-AA6U-01 4 147795908 147795908 G T TTC29 Silent p.A253A 0.21 TCGA-DK-AA6U-01 4 151770593 151770593 G A LRBA Missense_Mutation p.S1380L 0.13 deleterious(0) probably_damaging(0.989) TCGA-DK-AA6U-01 4 153691417 153691417 G A TIGD4 Missense_Mutation p.S247L 0.08 deleterious(0.05) possibly_damaging(0.834) TCGA-DK-AA6U-01 4 155298485 155298485 C A DCHS2 Missense_Mutation p.G116W 0.27 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 4 155298486 155298486 A T DCHS2 Missense_Mutation p.D115E 0.27 deleterious(0.03) possibly_damaging(0.893) TCGA-DK-AA6U-01 4 17621584 17621584 C G MED28 Missense_Mutation p.R74G 0.06 deleterious(0.04) possibly_damaging(0.722) TCGA-DK-AA6U-01 4 17974501 17974501 C G LCORL Missense_Mutation p.E54D 0.38 deleterious(0) probably_damaging(0.97) TCGA-DK-AA6U-01 4 185550569 185550569 C G CASP3 Missense_Mutation p.E231Q 0.13 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 4 20544136 20544136 C G SLIT2 Missense_Mutation p.C721W 0.34 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6U-01 4 22749383 22749383 C G GBA3 Missense_Mutation p.L251V 0.12 tolerated(0.11) benign(0.111) TCGA-DK-AA6U-01 4 40440034 40440034 C A RBM47 Missense_Mutation p.D293Y 0.12 tolerated(0.07) probably_damaging(0.948) TCGA-DK-AA6U-01 4 42551076 42551076 C A ATP8A1 Missense_Mutation p.G536W 0.18 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6U-01 4 44176914 44176914 C T KCTD8 Missense_Mutation p.E439K 0.15 deleterious(0) probably_damaging(0.956) TCGA-DK-AA6U-01 4 47912921 47912921 G C NFXL1 Missense_Mutation p.S109C 0.37 deleterious(0.01) probably_damaging(0.926) TCGA-DK-AA6U-01 4 56448309 56448309 A T PDCL2 Silent p.V34V 0.40 TCGA-DK-AA6U-01 4 65194260 65194260 G T TECRL Missense_Mutation p.P101T 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-DK-AA6U-01 4 71114925 71114925 C A CSN3 Missense_Mutation p.P100T 0.32 tolerated(0.2) possibly_damaging(0.876) TCGA-DK-AA6U-01 4 72316941 72316941 G A SLC4A4 Missense_Mutation p.M415I 0.45 tolerated(0.28) benign(0.008) TCGA-DK-AA6U-01 4 73185611 73185611 G A ADAMTS3 Missense_Mutation p.S391L 0.32 deleterious(0) possibly_damaging(0.897) TCGA-DK-AA6U-01 4 77979715 77979715 G A CCNI Missense_Mutation p.P63L 0.27 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 4 8242634 8242634 G A SH3TC1 Silent p.L1321L 0.36 TCGA-DK-AA6U-01 4 85722828 85722828 G A WDFY3 Nonsense_Mutation p.Q933* 0.11 TCGA-DK-AA6U-01 4 90856613 90856613 C A MMRN1 Missense_Mutation p.D594E 0.35 tolerated(0.22) benign(0.008) TCGA-DK-AA6U-01 4 96140242 96140242 G C UNC5C Missense_Mutation p.S508W 0.42 deleterious(0.01) possibly_damaging(0.785) TCGA-DK-AA6U-01 4 96140354 96140354 G A UNC5C Silent p.L471L 0.33 TCGA-DK-AA6U-01 5 120021828 120021828 C A PRR16 Silent p.I90I 0.12 TCGA-DK-AA6U-01 5 125885982 125885982 C T ALDH7A1 Missense_Mutation p.E441K 0.16 deleterious(0.03) benign(0.018) TCGA-DK-AA6U-01 5 140188692 140188692 G A PCDHA4 Silent p.T640T 0.13 TCGA-DK-AA6U-01 5 140589325 140589325 C A PCDHB12 Silent p.S282S 0.26 TCGA-DK-AA6U-01 5 140589326 140589326 C A PCDHB12 Missense_Mutation p.H283N 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.686) TCGA-DK-AA6U-01 5 140589935 140589935 G T PCDHB12 Missense_Mutation p.V486F 0.35 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-DK-AA6U-01 5 140590300 140590300 C G PCDHB12 Silent p.L607L 0.09 TCGA-DK-AA6U-01 5 140725757 140725757 G T PCDHGA3 Missense_Mutation p.W719C 0.20 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-DK-AA6U-01 5 140787882 140787882 C T PCDHGB6 Missense_Mutation p.P38L 0.25 deleterious(0.04) possibly_damaging(0.841) TCGA-DK-AA6U-01 5 140866409 140866409 G T PCDHGC4 Missense_Mutation p.D557Y 0.30 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 5 150276319 150276319 C T ZNF300 Missense_Mutation p.G177E 0.11 tolerated(0.11) benign(0.202) TCGA-DK-AA6U-01 5 150632783 150632783 G A GM2A Silent p.Q2Q 0.43 TCGA-DK-AA6U-01 5 158139296 158139296 G A EBF1 Missense_Mutation p.P472L 0.54 deleterious_low_confidence(0.05) possibly_damaging(0.659) TCGA-DK-AA6U-01 5 15936960 15936960 C T FBXL7 Missense_Mutation p.L381F 0.57 deleterious(0) probably_damaging(0.985) TCGA-DK-AA6U-01 5 159851272 159851272 G A PTTG1 Missense_Mutation p.S102N 0.34 tolerated(0.1) benign(0.012) TCGA-DK-AA6U-01 5 180582181 180582181 C G OR2V2 Missense_Mutation p.P80R 0.33 deleterious(0) possibly_damaging(0.86) TCGA-DK-AA6U-01 5 33658329 33658329 G A ADAMTS12 Missense_Mutation p.L384F 0.52 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 5 33881457 33881457 C T ADAMTS12 Missense_Mutation p.G86S 0.14 tolerated(0.7) benign(0.018) TCGA-DK-AA6U-01 5 37036535 37036535 C G NIPBL Missense_Mutation p.Q1973E 0.15 deleterious(0) probably_damaging(0.977) TCGA-DK-AA6U-01 5 38942465 38942465 C T RICTOR Missense_Mutation p.E1690K 0.05 tolerated(0.06) benign(0.203) TCGA-DK-AA6U-01 5 55439686 55439686 C G ANKRD55 Missense_Mutation p.G185A 0.40 deleterious(0) probably_damaging(0.959) TCGA-DK-AA6U-01 5 56219568 56219568 G - MIER3 Frame_Shift_Del p.P381Lfs*5 0.10 TCGA-DK-AA6U-01 5 59895032 59895032 C T DEPDC1B Missense_Mutation p.R433H 0.08 tolerated(0.42) benign(0.002) TCGA-DK-AA6U-01 5 63256875 63256875 G A HTR1A Silent p.F224F 0.36 TCGA-DK-AA6U-01 5 65892473 65892473 C A MAST4 5'UTR 0.44 TCGA-DK-AA6U-01 5 66462253 66462253 G A MAST4 Missense_Mutation p.E2416K 0.38 possibly_damaging(0.883) TCGA-DK-AA6U-01 5 70860673 70860673 C A BDP1 Missense_Mutation p.F2612L 0.18 deleterious(0) probably_damaging(0.98) TCGA-DK-AA6U-01 5 7867692 7867692 C G FASTKD3 Missense_Mutation p.E169Q 0.21 tolerated(0.18) benign(0.049) TCGA-DK-AA6U-01 5 79041275 79041275 G A CMYA5 Silent p.L3655L 0.12 TCGA-DK-AA6U-01 5 89925098 89925098 G T GPR98 Missense_Mutation p.K527N 0.41 possibly_damaging(0.788) TCGA-DK-AA6U-01 5 94206126 94206126 T A MCTP1 Missense_Mutation p.K771I 0.39 deleterious(0.03) probably_damaging(0.92) TCGA-DK-AA6U-01 6 10876185 10876185 G A GCM2 Missense_Mutation p.A174V 0.29 tolerated(0.05) possibly_damaging(0.522) TCGA-DK-AA6U-01 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.16 unknown(0) TCGA-DK-AA6U-01 6 133072386 133072386 G A VNN2 Silent p.C366C 0.44 TCGA-DK-AA6U-01 6 1391215 1391215 G T FOXF2 Missense_Mutation p.A345S 0.36 tolerated(0.36) benign(0) TCGA-DK-AA6U-01 6 158925121 158925121 G A TULP4 Missense_Mutation p.E1476K 0.31 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6U-01 6 168226797 168226797 G A MLLT4 5'Flank 0.18 TCGA-DK-AA6U-01 6 26200078 26200078 G A HIST1H2BF Missense_Mutation p.A98T 0.19 tolerated_low_confidence(0.06) benign(0.141) TCGA-DK-AA6U-01 6 27420449 27420449 G C ZNF184 Missense_Mutation p.Q297E 0.11 deleterious(0.02) probably_damaging(0.993) TCGA-DK-AA6U-01 6 28120851 28120851 G C ZKSCAN8 Missense_Mutation p.E265Q 0.30 tolerated(0.09) probably_damaging(0.995) TCGA-DK-AA6U-01 6 28219846 28219846 G A ZKSCAN4 5'UTR 0.23 TCGA-DK-AA6U-01 6 29588977 29588977 G A GABBR1 Silent p.I408I 0.13 TCGA-DK-AA6U-01 6 30593441 30593441 G A MRPS18B Missense_Mutation p.R215H 0.28 deleterious(0.01) probably_damaging(0.912) TCGA-DK-AA6U-01 6 31860481 31860481 C A EHMT2 Missense_Mutation p.G233V 0.16 tolerated_low_confidence(0.39) benign(0.154) TCGA-DK-AA6U-01 6 31917909 31917909 C A CFB Silent p.A999A 0.53 TCGA-DK-AA6U-01 6 32157571 32157571 C G PBX2 Missense_Mutation p.S41T 0.30 tolerated_low_confidence(0.44) unknown(0) TCGA-DK-AA6U-01 6 35052001 35052001 A G ANKS1A Missense_Mutation p.H1033R 0.42 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6U-01 6 38867556 38867556 C A DNAH8 Nonsense_Mutation p.S2806* 0.12 TCGA-DK-AA6U-01 6 40999824 40999824 G C UNC5CL Missense_Mutation p.I334M 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6U-01 6 42045335 42045335 G C TAF8 3'UTR 0.33 TCGA-DK-AA6U-01 6 43483806 43483806 C A YIPF3 Nonsense_Mutation p.E37* 0.07 TCGA-DK-AA6U-01 6 43487821 43487821 G C POLR1C Missense_Mutation p.E134Q 0.21 tolerated(0.06) possibly_damaging(0.884) TCGA-DK-AA6U-01 6 51611556 51611556 C G PKHD1 Missense_Mutation p.D3321H 0.11 deleterious(0) possibly_damaging(0.896) TCGA-DK-AA6U-01 6 56342268 56342268 C A DST Nonsense_Mutation p.E4561* 0.33 TCGA-DK-AA6U-01 6 66205098 66205098 G A EYS Missense_Mutation p.S69L 0.14 tolerated_low_confidence(0.17) benign(0.181) TCGA-DK-AA6U-01 6 7404771 7404771 C T RIOK1 Silent p.L325L 0.16 TCGA-DK-AA6U-01 6 99283560 99283560 G A POU3F2 Missense_Mutation p.E271K 0.14 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6U-01 7 100404991 100404991 G A EPHB4 Missense_Mutation p.S777F 0.06 deleterious(0.01) probably_damaging(0.983) TCGA-DK-AA6U-01 7 100676907 100676907 T G MUC17 Missense_Mutation p.M737R 0.47 probably_damaging(0.962) TCGA-DK-AA6U-01 7 102524756 102524756 A G FBXL13 Missense_Mutation p.S338P 0.04 deleterious(0) possibly_damaging(0.588) TCGA-DK-AA6U-01 7 103138329 103138329 G C RELN Missense_Mutation p.T2963S 0.25 tolerated(0.6) benign(0.403) TCGA-DK-AA6U-01 7 103848302 103848302 G C ORC5 Missense_Mutation p.I17M 0.05 tolerated(0.28) benign(0.003) TCGA-DK-AA6U-01 7 123388672 123388672 C A WASL Silent p.V39V 0.31 TCGA-DK-AA6U-01 7 134618714 134618714 C A CALD1 Silent p.A398A 0.30 TCGA-DK-AA6U-01 7 141441975 141441975 C T SSBP1 Missense_Mutation p.R11C 0.16 deleterious(0.04) benign(0.008) TCGA-DK-AA6U-01 7 142723741 142723741 A C OR9A2 Missense_Mutation p.F160C 0.40 tolerated(0.16) possibly_damaging(0.464) TCGA-DK-AA6U-01 7 151181864 151181864 C T RHEB Missense_Mutation p.G51R 0.09 deleterious(0.02) benign(0.303) TCGA-DK-AA6U-01 7 156746840 156746840 G A NOM1 Missense_Mutation p.E386K 0.11 deleterious(0.04) probably_damaging(0.964) TCGA-DK-AA6U-01 7 157177703 157177703 G T DNAJB6 Splice_Site p.X207_splice 0.30 TCGA-DK-AA6U-01 7 17375399 17375399 G T AHR Missense_Mutation p.Q383H 0.07 tolerated(0.1) benign(0.189) TCGA-DK-AA6U-01 7 21788284 21788284 G C DNAH11 Missense_Mutation p.R2873T 0.29 possibly_damaging(0.76) TCGA-DK-AA6U-01 7 2946457 2946457 C T CARD11 Missense_Mutation p.E1094K 0.19 tolerated(0.08) benign(0.154) TCGA-DK-AA6U-01 7 33134903 33134903 C T RP9 Silent p.K203K 0.12 TCGA-DK-AA6U-01 7 44715703 44715703 G C OGDH Missense_Mutation p.K387N 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6U-01 7 48312041 48312041 A G ABCA13 Silent p.A926A 0.05 TCGA-DK-AA6U-01 7 55479717 55479717 G A LANCL2 Missense_Mutation p.D315N 0.06 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 7 75613096 75613096 G C POR Missense_Mutation p.D330H 0.36 deleterious(0) possibly_damaging(0.647) TCGA-DK-AA6U-01 7 7612889 7612889 G C MIOS Missense_Mutation p.L261F 0.43 deleterious(0.04) benign(0.069) TCGA-DK-AA6U-01 7 80091571 80091571 A G GNAT3 Missense_Mutation p.S260P 0.44 tolerated(0.08) benign(0.116) TCGA-DK-AA6U-01 7 84642108 84642108 G A SEMA3D Silent p.D586D 0.38 TCGA-DK-AA6U-01 7 89790194 89790194 G A STEAP1 Missense_Mutation p.E54K 0.08 deleterious_low_confidence(0.02) benign(0.05) TCGA-DK-AA6U-01 7 92732033 92732033 G A SAMD9 Silent p.V1126V 0.10 TCGA-DK-AA6U-01 7 93516176 93516176 G A TFPI2 Missense_Mutation p.R222C 0.10 tolerated(0.14) benign(0.066) TCGA-DK-AA6U-01 7 94040248 94040248 C T COL1A2 Silent p.G415G 0.35 TCGA-DK-AA6U-01 7 99026737 99026737 A T ATP5J2-PTCD1 Missense_Mutation p.Y351N 0.25 deleterious(0.02) benign(0.272) TCGA-DK-AA6U-01 8 103287807 103287807 T A UBR5 Missense_Mutation p.K2224I 0.19 deleterious(0) probably_damaging(0.964) TCGA-DK-AA6U-01 8 104337068 104337068 C G FZD6 Missense_Mutation p.S245C 0.38 deleterious(0) probably_damaging(1) TCGA-DK-AA6U-01 8 110412387 110412387 G A PKHD1L1 Silent p.T365T 0.24 TCGA-DK-AA6U-01 8 119123017 119123017 G T EXT1 Missense_Mutation p.S90Y 0.21 deleterious(0.04) benign(0.109) TCGA-DK-AA6U-01 8 124749618 124749618 C G ANXA13 5'UTR 0.70 TCGA-DK-AA6U-01 8 125463956 125463956 C T TRMT12 Missense_Mutation p.A263V 0.04 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6U-01 8 133142079 133142079 G A KCNQ3 Silent p.I683I 0.05 TCGA-DK-AA6U-01 8 139890151 139890151 C T COL22A1 Missense_Mutation p.R167H 0.16 unknown(0) TCGA-DK-AA6U-01 8 144660267 144660267 G A NAPRT1 Silent p.D74D 0.36 TCGA-DK-AA6U-01 8 144808878 144808878 G A FAM83H Missense_Mutation p.P918L 0.14 deleterious(0.01) benign(0.154) TCGA-DK-AA6U-01 8 145753371 145753371 G A C8orf82 Intron 0.69 TCGA-DK-AA6U-01 8 145772875 145772875 C T ARHGAP39 Missense_Mutation p.S532N 0.36 tolerated(0.21) benign(0.007) TCGA-DK-AA6U-01 8 146068294 146068294 G C ZNF7 Missense_Mutation p.R601T 0.04 deleterious(0.02) probably_damaging(0.979) TCGA-DK-AA6U-01 8 21938666 21938666 A G DMTN Missense_Mutation p.T356A 0.56 tolerated(0.91) benign(0.01) TCGA-DK-AA6U-01 8 22570862 22570862 C A PEBP4 3'UTR 0.54 TCGA-DK-AA6U-01 8 55539327 55539327 G T RP1 Missense_Mutation p.G962V 0.07 tolerated(0.29) benign(0.018) TCGA-DK-AA6U-01 8 67743527 67743527 G A SGK3 Missense_Mutation p.G169E 0.26 deleterious(0) possibly_damaging(0.629) TCGA-DK-AA6U-01 8 69017442 69017442 C T PREX2 Intron 0.22 TCGA-DK-AA6U-01 8 72948686 72948686 T A TRPA1 Missense_Mutation p.N798Y 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-DK-AA6U-01 8 77776246 77776246 G A ZFHX4 Silent p.L3432L 0.10 TCGA-DK-AA6U-01 8 87552510 87552510 T C CPNE3 Missense_Mutation p.F194S 0.07 deleterious(0) probably_damaging(0.974) TCGA-DK-AA6U-01 8 89053792 89053792 G T MMP16 Missense_Mutation p.A574D 0.16 deleterious(0.02) probably_damaging(1) TCGA-DK-AA6U-01 8 99101516 99101516 G A C8orf47 Missense_Mutation p.G91R 0.07 tolerated(0.18) benign(0.001) TCGA-DK-AA6U-01 9 101984089 101984089 C A ALG2 Nonsense_Mutation p.E30* 0.20 TCGA-DK-AA6U-01 9 103055237 103055237 C A INVS Missense_Mutation p.L900M 0.69 tolerated_low_confidence(0.33) benign(0.14) TCGA-DK-AA6U-01 9 106864299 106864299 G A SMC2 Missense_Mutation p.R232H 0.15 tolerated(0.09) possibly_damaging(0.554) TCGA-DK-AA6U-01 9 121976185 121976185 G A BRINP1 Intron 0.14 TCGA-DK-AA6U-01 9 125617570 125617570 G C RC3H2 Nonsense_Mutation p.S903* 0.20 TCGA-DK-AA6U-01 9 125852127 125852127 G C RABGAP1 Missense_Mutation p.E839Q 0.52 tolerated(0.3) probably_damaging(0.979) TCGA-DK-AA6U-01 9 130854306 130854306 G A SLC25A25 Intron 0.17 TCGA-DK-AA6U-01 9 131715088 131715088 C - RP11-101E3.5 Frame_Shift_Del p.R63Dfs*3 0.20 TCGA-DK-AA6U-01 9 134738491 134738491 G A MED27 Nonsense_Mutation p.Q254* 0.40 TCGA-DK-AA6U-01 9 134738497 134738497 G A MED27 Missense_Mutation p.H252Y 0.36 deleterious(0) probably_damaging(0.977) TCGA-DK-AA6U-01 9 136315040 136315040 C T ADAMTS13 Missense_Mutation p.R1000C 0.18 deleterious(0) probably_damaging(0.982) TCGA-DK-AA6U-01 9 16436751 16436751 T A BNC2 Missense_Mutation p.S481C 0.41 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6U-01 9 20820969 20820969 C T FOCAD Silent p.F564F 0.53 TCGA-DK-AA6U-01 9 26842304 26842304 C T CAAP1 Missense_Mutation p.A361T 0.13 deleterious_low_confidence(0.02) benign(0.297) TCGA-DK-AA6U-01 9 33166842 33166842 C T B4GALT1 Missense_Mutation p.G109D 0.33 tolerated(0.6) benign(0.003) TCGA-DK-AA6U-01 9 35062088 35062088 G A VCP Silent p.L331L 0.19 TCGA-DK-AA6U-01 9 35092405 35092405 C T PIGO Silent p.G493G 0.43 TCGA-DK-AA6U-01 9 36923421 36923421 G C PAX5 Missense_Mutation p.L281V 0.08 deleterious(0.02) benign(0.056) TCGA-DK-AA6U-01 9 37537106 37537106 C A FBXO10 Splice_Site p.X473_splice 0.57 TCGA-DK-AA6U-01 9 73235062 73235062 C T TRPM3 Missense_Mutation p.A675T 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-DK-AA6U-01 9 99525457 99525457 C T ZNF510 Missense_Mutation p.E99K 0.12 deleterious(0) possibly_damaging(0.449) TCGA-DK-AA6U-01 X 100880990 100880990 C T ARMCX3 Nonsense_Mutation p.Q341* 0.18 TCGA-DK-AA6U-01 X 127185931 127185931 C A ACTRT1 Missense_Mutation p.M85I 0.74 deleterious(0.01) benign(0.322) TCGA-DK-AA6U-01 X 134947460 134947460 C G CT45A5 Missense_Mutation p.E163Q 0.81 deleterious(0) possibly_damaging(0.594) TCGA-DK-AA6U-01 X 153197542 153197542 G A NAA10 Missense_Mutation p.S123F 0.10 deleterious(0.01) possibly_damaging(0.82) TCGA-DK-AA6U-01 X 153595202 153595202 G T FLNA Silent p.G295G 0.81 TCGA-DK-AA6U-01 X 153660652 153660652 C G ATP6AP1 Missense_Mutation p.A135G 0.96 deleterious(0.01) possibly_damaging(0.755) TCGA-DK-AA6U-01 X 34962424 34962424 C T FAM47B Silent p.T492T 0.71 TCGA-DK-AA6U-01 X 41206590 41206590 G T DDX3X Missense_Mutation p.A599S 0.79 tolerated(0.48) unknown(0) TCGA-DK-AA6U-01 X 54099434 54099434 C G FAM120C 3'UTR 0.79 TCGA-DK-AA6W-01 10 104174909 104174909 G A PSD Nonsense_Mutation p.R279* 0.37 TCGA-DK-AA6W-01 10 118380838 118380838 C T PNLIPRP2 Silent p.L7L 0.53 TCGA-DK-AA6W-01 10 126682440 126682440 C G CTBP2 Missense_Mutation p.E839Q 0.50 deleterious(0.01) benign(0.081) TCGA-DK-AA6W-01 10 13240691 13240691 G A MCM10 Missense_Mutation p.E709K 0.45 tolerated(0.19) benign(0.101) TCGA-DK-AA6W-01 10 17210866 17210866 C T TRDMT1 Missense_Mutation p.M75I 0.45 deleterious(0) probably_damaging(0.968) TCGA-DK-AA6W-01 10 18905157 18905157 C T NSUN6 Missense_Mutation p.R126K 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6W-01 10 38345330 38345330 C G ZNF33A Missense_Mutation p.Q760E 0.50 tolerated(0.18) benign(0.364) TCGA-DK-AA6W-01 10 49791066 49791066 G T ARHGAP22 Missense_Mutation p.Q56K 0.37 tolerated(0.15) benign(0.001) TCGA-DK-AA6W-01 10 54527898 54527898 C T MBL2 Silent p.%3D 0.34 TCGA-DK-AA6W-01 10 6553157 6553157 C T PRKCQ Splice_Site p.X40_splice 0.33 TCGA-DK-AA6W-01 10 81063801 81063801 T G ZMIZ1 Missense_Mutation p.S719A 0.29 benign(0.118) TCGA-DK-AA6W-01 10 95719701 95719701 C T PIPSL RNA 0.42 TCGA-DK-AA6W-01 10 98742495 98742495 G A C10orf12 Missense_Mutation p.E450K 0.45 tolerated(0.11) benign(0.046) TCGA-DK-AA6W-01 11 111746266 111746266 G A FDXACB1 Silent p.L419L 0.47 TCGA-DK-AA6W-01 11 111746622 111746622 G A FDXACB1 Missense_Mutation p.S300F 0.30 tolerated(0.12) benign(0.007) TCGA-DK-AA6W-01 11 111746689 111746689 G A FDXACB1 Missense_Mutation p.P278S 0.34 tolerated(0.55) benign(0.004) TCGA-DK-AA6W-01 11 111746692 111746692 G A FDXACB1 Missense_Mutation p.L277F 0.35 tolerated(0.49) benign(0.004) TCGA-DK-AA6W-01 11 20139724 20139724 C T NAV2 Missense_Mutation p.P2463S 0.46 deleterious(0.02) unknown(0) TCGA-DK-AA6W-01 11 35211541 35211541 C G CD44 Missense_Mutation p.S199C 0.37 deleterious(0) possibly_damaging(0.497) TCGA-DK-AA6W-01 11 36440835 36440835 C A PRR5L Missense_Mutation p.F92L 0.35 deleterious(0.05) probably_damaging(0.968) TCGA-DK-AA6W-01 11 4411450 4411450 G A TRIM21 Missense_Mutation p.R64W 0.56 tolerated(0.19) benign(0.42) TCGA-DK-AA6W-01 11 4674658 4674658 T A OR51E1 Missense_Mutation p.I301N 0.32 deleterious(0) probably_damaging(1) TCGA-DK-AA6W-01 11 47510469 47510469 C T CELF1 Missense_Mutation p.R60Q 0.39 deleterious(0) benign(0.285) TCGA-DK-AA6W-01 11 48267376 48267376 T G OR4X2 Missense_Mutation p.L241V 0.61 deleterious(0) possibly_damaging(0.777) TCGA-DK-AA6W-01 11 5841757 5841757 C T OR52N2 Silent p.F64F 0.44 TCGA-DK-AA6W-01 11 58919728 58919728 G A FAM111A Missense_Mutation p.R196K 0.34 tolerated(1) benign(0.001) TCGA-DK-AA6W-01 11 617419 617419 C T CDHR5 Missense_Mutation p.E824K 0.29 tolerated(0.17) unknown(0) TCGA-DK-AA6W-01 11 66108769 66108769 C T BRMS1 Missense_Mutation p.R89Q 0.28 tolerated(0.13) benign(0.021) TCGA-DK-AA6W-01 11 66332255 66332255 C G CTSF Missense_Mutation p.K396N 0.88 tolerated(0.07) possibly_damaging(0.469) TCGA-DK-AA6W-01 11 66332359 66332359 C G CTSF Missense_Mutation p.Q388H 0.74 tolerated(0.14) benign(0.007) TCGA-DK-AA6W-01 11 67223578 67223578 C G CABP4 Intron 0.43 TCGA-DK-AA6W-01 11 70319378 70319378 C G SHANK2 Missense_Mutation p.E1717Q 0.79 deleterious(0.04) benign(0.403) TCGA-DK-AA6W-01 11 8158946 8158946 C T RIC3 Missense_Mutation p.R167K 0.84 tolerated(0.27) possibly_damaging(0.79) TCGA-DK-AA6W-01 12 109845639 109845639 G C MYO1H Missense_Mutation p.R343T 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6W-01 12 111168532 111168532 G A PPP1CC Nonsense_Mutation p.R74* 0.49 TCGA-DK-AA6W-01 12 112147435 112147435 G A ACAD10 Missense_Mutation p.D213N 0.30 deleterious(0.01) probably_damaging(0.915) TCGA-DK-AA6W-01 12 122862358 122862358 C T CLIP1 Missense_Mutation p.E79K 0.32 deleterious(0) probably_damaging(0.993) TCGA-DK-AA6W-01 12 123071247 123071247 G A KNTC1 Splice_Site p.X1225_splice 0.22 TCGA-DK-AA6W-01 12 53450858 53450858 G C TENC1 Missense_Mutation p.E285Q 0.90 tolerated(0.11) probably_damaging(0.998) TCGA-DK-AA6W-01 12 53451392 53451392 G C TENC1 Missense_Mutation p.R306T 0.82 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6W-01 12 57548274 57548274 C G LRP1 Missense_Mutation p.F339L 0.53 possibly_damaging(0.704) TCGA-DK-AA6W-01 12 57849543 57849543 C T INHBE Missense_Mutation p.A75V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-DK-AA6W-01 12 58002887 58002887 G T DTX3 Silent p.L332L 0.57 TCGA-DK-AA6W-01 12 7480927 7480927 C G ACSM4 Missense_Mutation p.I567M 0.86 deleterious(0) probably_damaging(0.983) TCGA-DK-AA6W-01 12 85674234 85674234 G C ALX1 Missense_Mutation p.L65F 0.63 deleterious_low_confidence(0.02) benign(0.076) TCGA-DK-AA6W-01 13 109859108 109859108 A C MYO16 Missense_Mutation p.K1834T 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-AA6W-01 13 39262634 39262634 C T FREM2 Nonsense_Mutation p.Q385* 0.77 TCGA-DK-AA6W-01 13 70456512 70456512 T C KLHL1 Missense_Mutation p.H377R 0.36 tolerated(0.14) benign(0.425) TCGA-DK-AA6W-01 13 70549858 70549858 C A KLHL1 Missense_Mutation p.V192F 0.54 tolerated(0.1) benign(0.269) TCGA-DK-AA6W-01 13 92346023 92346023 C G GPC5 Missense_Mutation p.S303W 0.25 deleterious(0) probably_damaging(1) TCGA-DK-AA6W-01 13 96705586 96705586 G C UGGT2 5'UTR 0.44 TCGA-DK-AA6W-01 14 100995525 100995525 C T WDR25 Missense_Mutation p.R465W 0.27 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6W-01 14 104120961 104120961 A G KLC1 Silent p.T20T 0.51 TCGA-DK-AA6W-01 14 105353177 105353177 G C CEP170B Missense_Mutation p.E867D 0.34 deleterious(0.04) benign(0.315) TCGA-DK-AA6W-01 14 22600902 22600902 G A TRAV8-7 Missense_Mutation p.E83K 0.33 tolerated(0.08) possibly_damaging(0.667) TCGA-DK-AA6W-01 14 24651013 24651013 G A IPO4 Silent p.L948L 0.28 TCGA-DK-AA6W-01 14 38679063 38679063 G A SSTR1 Missense_Mutation p.V157M 0.24 tolerated(0.05) possibly_damaging(0.624) TCGA-DK-AA6W-01 14 42355858 42355858 C T LRFN5 Silent p.L10L 0.35 TCGA-DK-AA6W-01 14 42356669 42356669 G C LRFN5 Missense_Mutation p.E281Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6W-01 14 55424327 55424327 G A WDHD1 Nonsense_Mutation p.R910* 0.07 TCGA-DK-AA6W-01 14 81943501 81943501 C T SEL1L Missense_Mutation p.D734N 0.24 tolerated(0.16) benign(0.18) TCGA-DK-AA6W-01 14 94088427 94088427 G A UNC79 Silent p.S1439S 0.29 TCGA-DK-AA6W-01 15 22990158 22990158 C T CYFIP1 Silent p.I926I 0.81 TCGA-DK-AA6W-01 15 28460878 28460878 G C HERC2 Missense_Mutation p.I2033M 0.25 probably_damaging(0.992) TCGA-DK-AA6W-01 15 40915746 40915746 A G CASC5 Missense_Mutation p.E1121G 0.80 tolerated(0.19) benign(0.005) TCGA-DK-AA6W-01 15 64706346 64706346 A T TRIP4 Missense_Mutation p.D369V 0.68 tolerated(0.08) benign(0.006) TCGA-DK-AA6W-01 15 65944008 65944008 G T SLC24A1 Nonsense_Mutation p.E932* 0.23 TCGA-DK-AA6W-01 15 69714344 69714344 A C KIF23 Silent p.T110T 0.36 TCGA-DK-AA6W-01 15 84700186 84700186 T G ADAMTSL3 Splice_Site p.X1585_splice 0.31 TCGA-DK-AA6W-01 15 89395057 89395057 G C ACAN Missense_Mutation p.E687Q 0.30 deleterious(0.01) unknown(0) TCGA-DK-AA6W-01 15 89695026 89695026 G C ABHD2 Missense_Mutation p.D105H 0.72 deleterious(0) possibly_damaging(0.899) TCGA-DK-AA6W-01 15 91424800 91424800 C T FURIN Missense_Mutation p.R693W 0.67 deleterious(0.02) benign(0.083) TCGA-DK-AA6W-01 16 19693574 19693574 C G C16orf62 Missense_Mutation p.L886V 0.57 deleterious(0.03) possibly_damaging(0.636) TCGA-DK-AA6W-01 16 22285043 22285043 G A EEF2K Missense_Mutation p.D621N 0.33 deleterious(0.01) probably_damaging(0.962) TCGA-DK-AA6W-01 16 3071909 3071909 G A TNFRSF12A 3'UTR 0.27 TCGA-DK-AA6W-01 16 31283199 31283199 G A ITGAM Missense_Mutation p.R197Q 0.19 tolerated(0.59) benign(0.001) TCGA-DK-AA6W-01 16 55883609 55883609 G C CES5A Silent p.V479V 0.48 TCGA-DK-AA6W-01 16 67942658 67942658 C G PSKH1 Silent p.G2G 0.41 TCGA-DK-AA6W-01 16 68024029 68024029 C T DPEP2 Silent p.K305K 0.37 TCGA-DK-AA6W-01 16 84778274 84778274 G A USP10 Missense_Mutation p.E63K 0.41 tolerated_low_confidence(0.07) possibly_damaging(0.589) TCGA-DK-AA6W-01 16 89349481 89349481 C G ANKRD11 Missense_Mutation p.E1157Q 0.29 probably_damaging(0.993) TCGA-DK-AA6W-01 16 89349928 89349928 C G ANKRD11 Missense_Mutation p.E1008Q 0.34 possibly_damaging(0.901) TCGA-DK-AA6W-01 16 89350177 89350177 C A ANKRD11 Nonsense_Mutation p.E925* 0.50 TCGA-DK-AA6W-01 16 90076512 90076512 G T DBNDD1 5'UTR 0.60 TCGA-DK-AA6W-01 17 15441399 15441399 C T TVP23C Intron 0.49 TCGA-DK-AA6W-01 17 19685274 19685274 G C ULK2 Missense_Mutation p.S856C 0.24 deleterious(0) probably_damaging(0.98) TCGA-DK-AA6W-01 17 26864385 26864385 G A FOXN1 Silent p.T626T 0.24 TCGA-DK-AA6W-01 17 29490319 29490319 G T NF1 Missense_Mutation p.R135L 0.58 tolerated(0.14) possibly_damaging(0.81) TCGA-DK-AA6W-01 17 37563648 37563648 C T MED1 3'UTR 0.47 TCGA-DK-AA6W-01 17 37824887 37824887 C T PNMT Silent p.V53V 0.29 TCGA-DK-AA6W-01 17 4074069 4074069 G A ANKFY1 Nonsense_Mutation p.Q1118* 0.88 TCGA-DK-AA6W-01 17 43138713 43138713 G C NMT1 Missense_Mutation p.E6Q 0.16 tolerated_low_confidence(0.12) benign(0.371) TCGA-DK-AA6W-01 17 54893150 54893150 C A C17orf67 Missense_Mutation p.V8L 0.24 tolerated(0.36) benign(0.001) TCGA-DK-AA6W-01 17 57937681 57937681 G C TUBD1 3'UTR 0.33 TCGA-DK-AA6W-01 17 62025423 62025423 C T SCN4A Missense_Mutation p.A1049T 0.43 deleterious(0.02) probably_damaging(0.977) TCGA-DK-AA6W-01 17 649490 649490 G A GEMIN4 Missense_Mutation p.S598L 0.78 tolerated(0.33) benign(0.006) TCGA-DK-AA6W-01 17 73560667 73560667 G A LLGL2 Intron 0.22 TCGA-DK-AA6W-01 17 7578213 7578213 A - TP53 Frame_Shift_Del p.R213Dfs*34 0.52 TCGA-DK-AA6W-01 17 78362990 78362990 G A RNF213 Silent p.S5006S 0.16 TCGA-DK-AA6W-01 17 7909777 7909777 G A GUCY2D Missense_Mutation p.G375R 0.39 deleterious(0.01) probably_damaging(0.964) TCGA-DK-AA6W-01 17 79478230 79478230 G T ACTG1 Missense_Mutation p.F262L 0.18 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-DK-AA6W-01 17 8439216 8439216 C T MYH10 Missense_Mutation p.E547K 0.48 probably_damaging(0.996) TCGA-DK-AA6W-01 18 31599563 31599563 C T NOL4 Missense_Mutation p.D259N 0.22 deleterious(0.03) probably_damaging(0.98) TCGA-DK-AA6W-01 18 42531777 42531777 T C SETBP1 Silent p.S824S 0.35 TCGA-DK-AA6W-01 18 55711843 55711843 G T NEDD4L 5'UTR 0.21 TCGA-DK-AA6W-01 18 56587357 56587357 C T ZNF532 Missense_Mutation p.T613M 0.19 tolerated(0.2) benign(0.006) TCGA-DK-AA6W-01 18 67718734 67718734 G C RTTN Missense_Mutation p.L1746V 0.25 deleterious(0) possibly_damaging(0.741) TCGA-DK-AA6W-01 18 70450929 70450929 G A NETO1 Silent p.F284F 0.25 TCGA-DK-AA6W-01 18 77733766 77733766 G A TXNL4A Silent p.I116I 0.34 TCGA-DK-AA6W-01 18 8633290 8633290 G C RAB12 Missense_Mutation p.D131H 0.04 deleterious(0) possibly_damaging(0.643) TCGA-DK-AA6W-01 19 1085894 1085894 C G HMHA1 Missense_Mutation p.F1116L 0.45 tolerated_low_confidence(0.33) benign(0.076) TCGA-DK-AA6W-01 19 13189483 13189483 C T NFIX Nonsense_Mutation p.Q338* 0.33 TCGA-DK-AA6W-01 19 14877913 14877913 C T EMR2 Missense_Mutation p.E122K 0.53 tolerated(0.07) benign(0.118) TCGA-DK-AA6W-01 19 15364547 15364547 G A BRD4 Intron 0.59 TCGA-DK-AA6W-01 19 17758269 17758269 C T UNC13A Missense_Mutation p.E617K 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-DK-AA6W-01 19 21477264 21477264 G A ZNF708 Silent p.F168F 0.23 TCGA-DK-AA6W-01 19 291346 291346 G T PPAP2C 5'Flank 0.26 TCGA-DK-AA6W-01 19 33467501 33467501 G C C19orf40 Silent p.L187L 0.29 TCGA-DK-AA6W-01 19 35801453 35801453 G A MAG Missense_Mutation p.R508Q 0.33 tolerated(0.29) benign(0.101) TCGA-DK-AA6W-01 19 3586821 3586821 G A GIPC3 Missense_Mutation p.E141K 0.43 deleterious(0.01) possibly_damaging(0.833) TCGA-DK-AA6W-01 19 37382438 37382438 T G ZNF829 Missense_Mutation p.S500R 0.11 tolerated(0.43) possibly_damaging(0.625) TCGA-DK-AA6W-01 19 38937378 38937378 C T RYR1 Missense_Mutation p.S257F 0.32 probably_damaging(1) TCGA-DK-AA6W-01 19 39106841 39106841 A T MAP4K1 Missense_Mutation p.Y103N 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6W-01 19 46375735 46375735 C T FOXA3 Nonsense_Mutation p.Q158* 0.23 TCGA-DK-AA6W-01 19 46914452 46914452 C T CCDC8 Silent p.%3D 0.22 TCGA-DK-AA6W-01 19 46914520 46914520 C T CCDC8 Silent p.R516R 0.21 TCGA-DK-AA6W-01 19 46973439 46973439 G A PNMAL1 Missense_Mutation p.S285L 0.30 tolerated(0.1) possibly_damaging(0.504) TCGA-DK-AA6W-01 19 47823943 47823943 C T C5AR1 Silent p.A303A 0.21 TCGA-DK-AA6W-01 19 49686348 49686348 C T TRPM4 Missense_Mutation p.S541L 0.48 tolerated(0.35) benign(0.001) TCGA-DK-AA6W-01 19 50029468 50029468 G A FCGRT 3'UTR 0.50 TCGA-DK-AA6W-01 19 50542429 50542429 C T ZNF473 Silent p.T7T 0.22 TCGA-DK-AA6W-01 19 52725404 52725404 C T PPP2R1A Missense_Mutation p.T524M 0.24 tolerated(0.25) benign(0.15) TCGA-DK-AA6W-01 19 5616293 5616293 C T SAFB2 Missense_Mutation p.M131I 0.29 tolerated(1) benign(0.001) TCGA-DK-AA6W-01 19 57648317 57648317 G A ZIM3 Silent p.P55P 0.34 TCGA-DK-AA6W-01 19 57672085 57672085 G C DUXA Missense_Mutation p.Q36E 0.28 deleterious(0.02) possibly_damaging(0.787) TCGA-DK-AA6W-01 19 57888566 57888566 C A ZNF547 Silent p.V74V 0.41 TCGA-DK-AA6W-01 19 58718134 58718134 G A ZNF274 Missense_Mutation p.E102K 0.36 tolerated(0.51) benign(0.41) TCGA-DK-AA6W-01 19 8167607 8167607 C T FBN3 Splice_Site p.X1697_splice 0.58 TCGA-DK-AA6W-01 19 9070991 9070991 C T MUC16 Silent p.L5485L 0.13 TCGA-DK-AA6W-01 1 109268550 109268550 C A FNDC7 Missense_Mutation p.F345L 0.32 deleterious(0.01) possibly_damaging(0.688) TCGA-DK-AA6W-01 1 110301945 110301945 G C EPS8L3 Missense_Mutation p.S107C 0.22 deleterious(0.01) probably_damaging(1) TCGA-DK-AA6W-01 1 118492707 118492707 C G WDR3 Missense_Mutation p.S567C 0.29 deleterious(0.05) benign(0.272) TCGA-DK-AA6W-01 1 119456784 119456784 C T TBX15 Missense_Mutation p.D188N 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-DK-AA6W-01 1 12317073 12317073 C G VPS13D Silent p.L290L 0.24 TCGA-DK-AA6W-01 1 144916593 144916593 G A PDE4DIP Missense_Mutation p.H588Y 0.12 deleterious(0) possibly_damaging(0.84) TCGA-DK-AA6W-01 1 145608482 145608482 C T POLR3C Missense_Mutation p.E109K 0.58 tolerated(0.07) probably_damaging(0.921) TCGA-DK-AA6W-01 1 147410899 147410899 C T GPR89B Silent p.I58I 0.37 TCGA-DK-AA6W-01 1 152323362 152323362 C G FLG2 Missense_Mutation p.Q2300H 0.26 benign(0.003) TCGA-DK-AA6W-01 1 152760055 152760055 G A LCE1E Missense_Mutation p.D94N 0.75 tolerated_low_confidence(0.76) unknown(0) TCGA-DK-AA6W-01 1 152760178 152760178 G A LCE1E 3'UTR 0.67 TCGA-DK-AA6W-01 1 153967640 153967640 G A NUP210L Silent p.S1801S 0.24 TCGA-DK-AA6W-01 1 155264089 155264089 C A PKLR Silent p.L351L 0.29 TCGA-DK-AA6W-01 1 155717916 155717916 G A GON4L 3'Flank 0.43 TCGA-DK-AA6W-01 1 156703213 156703213 G A RRNAD1 Silent p.V179V 0.25 TCGA-DK-AA6W-01 1 160011440 160011440 G C KCNJ10 Missense_Mutation p.Q295E 0.56 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6W-01 1 167096930 167096930 C A DUSP27 Nonsense_Mutation p.Y854* 0.31 TCGA-DK-AA6W-01 1 169391207 169391207 G C CCDC181 Missense_Mutation p.F154L 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6W-01 1 171510168 171510168 G C PRRC2C Missense_Mutation p.R1186T 0.23 unknown(0) TCGA-DK-AA6W-01 1 180885514 180885516 AGA - KIAA1614 In_Frame_Del p.K93del 0.37 TCGA-DK-AA6W-01 1 207700238 207700238 C A CR1 Missense_Mutation p.Q343K 0.32 tolerated(0.94) benign(0.058) TCGA-DK-AA6W-01 1 227618266 227618266 C T CTD-2090I13.1 RNA 0.43 TCGA-DK-AA6W-01 1 228447433 228447433 G A OBSCN Missense_Mutation p.C1698Y 0.21 benign(0.11) TCGA-DK-AA6W-01 1 235973465 235973465 G T LYST Missense_Mutation p.A218D 0.28 tolerated_low_confidence(0.09) benign(0.003) TCGA-DK-AA6W-01 1 240072073 240072073 C T CHRM3 Missense_Mutation p.S441F 0.63 deleterious(0.04) benign(0.285) TCGA-DK-AA6W-01 1 240072230 240072230 C T CHRM3 Silent p.L493L 0.51 TCGA-DK-AA6W-01 1 26310994 26310994 C T PAFAH2 Missense_Mutation p.E123K 0.15 deleterious(0) probably_damaging(0.943) TCGA-DK-AA6W-01 1 26584703 26584703 C G CEP85 Silent p.L369L 0.25 TCGA-DK-AA6W-01 1 27087558 27087558 C G ARID1A Nonsense_Mutation p.S711* 0.63 TCGA-DK-AA6W-01 1 28857058 28857058 C T RCC1 Missense_Mutation p.R33C 0.31 deleterious(0.03) benign(0.432) TCGA-DK-AA6W-01 1 29475466 29475466 C T SRSF4 Missense_Mutation p.R314Q 0.53 deleterious_low_confidence(0.02) unknown(0) TCGA-DK-AA6W-01 1 29585261 29585261 C T PTPRU Silent p.V150V 0.27 TCGA-DK-AA6W-01 1 32741583 32741583 C T LCK Missense_Mutation p.R184C 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-DK-AA6W-01 1 43022002 43022002 G C CCDC30 Missense_Mutation p.E201Q 0.15 deleterious(0.02) probably_damaging(0.989) TCGA-DK-AA6W-01 1 43916112 43916112 C T SZT2 Silent p.I3363I 0.58 TCGA-DK-AA6W-01 1 44437342 44437342 G A DPH2 Silent p.K256K 0.45 TCGA-DK-AA6W-01 1 47497107 47497107 G T CYP4X1 Splice_Site p.X107_splice 0.25 TCGA-DK-AA6W-01 1 47504396 47504396 G C CYP4X1 Missense_Mutation p.K280N 0.53 tolerated(0.15) benign(0.376) TCGA-DK-AA6W-01 1 52385675 52385675 G A RAB3B Missense_Mutation p.P195L 0.36 deleterious(0.01) benign(0.1) TCGA-DK-AA6W-01 1 53792581 53792581 C T LRP8 Missense_Mutation p.D70N 0.25 tolerated(0.16) benign(0.05) TCGA-DK-AA6W-01 1 62330175 62330175 C A INADL Missense_Mutation p.S902Y 0.32 deleterious(0.01) possibly_damaging(0.707) TCGA-DK-AA6W-01 1 70486786 70486786 G A LRRC7 Missense_Mutation p.D469N 0.30 deleterious(0) benign(0.063) TCGA-DK-AA6W-01 1 76190379 76190379 C G ACADM 5'Flank 0.26 TCGA-DK-AA6W-01 1 93584938 93584938 C G MTF2 Silent p.L259L 0.19 TCGA-DK-AA6W-01 20 1532455 1532455 G - SIRPD Frame_Shift_Del p.T102Pfs*17 0.23 TCGA-DK-AA6W-01 20 21494067 21494067 C T NKX2-2 Missense_Mutation p.E81K 0.38 tolerated(0.44) benign(0.015) TCGA-DK-AA6W-01 20 31369187 31369187 G C DNMT3B Missense_Mutation p.K57N 0.16 deleterious_low_confidence(0.01) benign(0.21) TCGA-DK-AA6W-01 20 31811656 31811656 G A BPIFA3 Missense_Mutation p.R56Q 0.17 tolerated(0.34) possibly_damaging(0.596) TCGA-DK-AA6W-01 20 31961946 31961946 G A CDK5RAP1 Missense_Mutation p.R394C 0.04 deleterious(0.05) benign(0.033) TCGA-DK-AA6W-01 20 43056985 43056985 C T HNF4A Silent p.S380S 0.44 TCGA-DK-AA6W-01 20 44569491 44569491 C T PCIF1 Missense_Mutation p.S144F 0.26 deleterious(0.01) possibly_damaging(0.695) TCGA-DK-AA6W-01 20 44676662 44676662 C T SLC12A5 Silent p.L673L 0.60 TCGA-DK-AA6W-01 20 57768064 57768064 G T ZNF831 Missense_Mutation p.A664S 0.69 tolerated(0.11) possibly_damaging(0.703) TCGA-DK-AA6W-01 21 36259204 36259204 T C RUNX1 Missense_Mutation p.N96S 0.67 tolerated(0.07) probably_damaging(0.988) TCGA-DK-AA6W-01 21 37665828 37665828 G T DOPEY2 Nonsense_Mutation p.E2286* 0.09 TCGA-DK-AA6W-01 21 47571574 47571574 C T FTCD Silent p.A178A 0.82 TCGA-DK-AA6W-01 22 32188758 32188758 C G DEPDC5 Nonsense_Mutation p.S241* 0.85 TCGA-DK-AA6W-01 22 39355623 39355623 G A APOBEC3A Missense_Mutation p.E36K 0.79 tolerated(0.33) benign(0.011) TCGA-DK-AA6W-01 22 39355629 39355629 G A APOBEC3A Missense_Mutation p.E38K 0.79 deleterious(0.03) benign(0.067) TCGA-DK-AA6W-01 22 41566488 41566488 G A EP300 Silent p.Q1455Q 0.55 TCGA-DK-AA6W-01 22 41568620 41568620 G A EP300 Missense_Mutation p.E1524K 0.54 probably_damaging(0.937) TCGA-DK-AA6W-01 22 42415321 42415321 G C WBP2NL Missense_Mutation p.L23F 0.83 deleterious(0.01) possibly_damaging(0.794) TCGA-DK-AA6W-01 2 116535411 116535411 G T DPP10 Splice_Site p.X458_splice 0.34 TCGA-DK-AA6W-01 2 160605018 160605018 G C MARCH7 Missense_Mutation p.R406T 0.38 deleterious(0) probably_damaging(0.992) TCGA-DK-AA6W-01 2 169814519 169814519 C G ABCB11 Silent p.G766G 0.28 TCGA-DK-AA6W-01 2 169814608 169814608 C T ABCB11 Missense_Mutation p.E737K 0.24 tolerated(0.3) benign(0.018) TCGA-DK-AA6W-01 2 179403718 179403718 C A TTN Nonsense_Mutation p.E32982* 0.30 TCGA-DK-AA6W-01 2 179474518 179474518 C A TTN Missense_Mutation p.G17211V 0.09 TCGA-DK-AA6W-01 2 1921097 1921097 C G MYT1L Missense_Mutation p.E498Q 0.14 deleterious(0) possibly_damaging(0.907) TCGA-DK-AA6W-01 2 204276052 204276052 C A ABI2 Missense_Mutation p.Q346K 0.51 deleterious(0.04) possibly_damaging(0.637) TCGA-DK-AA6W-01 2 204571318 204571318 C T CD28 5'UTR 0.43 TCGA-DK-AA6W-01 2 208618330 208618330 G A CCNYL1 Missense_Mutation p.E279K 0.24 deleterious(0.02) benign(0.275) TCGA-DK-AA6W-01 2 208618339 208618339 G C CCNYL1 Missense_Mutation p.D282H 0.24 deleterious(0) possibly_damaging(0.805) TCGA-DK-AA6W-01 2 208795688 208795688 G A PLEKHM3 Silent p.F616F 0.57 TCGA-DK-AA6W-01 2 219232343 219232343 G A C2orf62 Intron 0.35 TCGA-DK-AA6W-01 2 219920433 219920433 G A IHH Silent p.L244L 0.23 TCGA-DK-AA6W-01 2 220149525 220149525 C T DNAJB2 Missense_Mutation p.S264L 0.35 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6W-01 2 223918025 223918025 C T KCNE4 Silent p.S159S 0.38 TCGA-DK-AA6W-01 2 228175592 228175592 G T COL4A3 Missense_Mutation p.R1619I 0.21 unknown(0) TCGA-DK-AA6W-01 2 228563522 228563522 C A SLC19A3 Missense_Mutation p.W303C 0.19 deleterious(0) probably_damaging(1) TCGA-DK-AA6W-01 2 233660833 233660833 C G GIGYF2 Nonsense_Mutation p.S535* 0.47 TCGA-DK-AA6W-01 2 233897534 233897534 G C NEU2 Silent p.L51L 0.46 TCGA-DK-AA6W-01 2 234669122 234669122 C T UGT1A8 Intron 0.66 TCGA-DK-AA6W-01 2 240981281 240981281 G A PRR21 Silent p.F373F 0.66 TCGA-DK-AA6W-01 2 241468619 241468619 G A ANKMY1 Missense_Mutation p.S174L 0.32 deleterious(0) probably_damaging(1) TCGA-DK-AA6W-01 2 48808101 48808101 C T STON1-GTF2A1L Missense_Mutation p.S110L 0.39 deleterious(0.02) benign(0.004) TCGA-DK-AA6W-01 2 54114420 54114420 G C PSME4 Missense_Mutation p.Q1569E 0.31 tolerated(0.5) benign(0.004) TCGA-DK-AA6W-01 2 73172066 73172066 C A SFXN5 3'UTR 0.40 TCGA-DK-AA6W-01 2 73455601 73455601 G A PRADC1 Missense_Mutation p.P183L 0.40 deleterious(0) possibly_damaging(0.5) TCGA-DK-AA6W-01 2 73717866 73717866 G A ALMS1 Missense_Mutation p.R2926Q 0.17 benign(0.074) TCGA-DK-AA6W-01 2 74710478 74710478 G C TTC31 Missense_Mutation p.E24Q 0.50 tolerated_low_confidence(0.17) benign(0.055) TCGA-DK-AA6W-01 2 80646695 80646695 T A CTNNA2 Missense_Mutation p.V420D 0.33 deleterious(0) benign(0.303) TCGA-DK-AA6W-01 2 85982020 85982020 C T ATOH8 Silent p.N236N 0.20 TCGA-DK-AA6W-01 2 9572670 9572670 C T CPSF3 Silent p.T124T 0.14 TCGA-DK-AA6W-01 2 96040659 96040659 C G KCNIP3 Missense_Mutation p.Q124E 0.45 deleterious(0.03) benign(0.166) TCGA-DK-AA6W-01 2 96993457 96993457 C G ITPRIPL1 Nonsense_Mutation p.S371* 0.25 TCGA-DK-AA6W-01 3 101404752 101404752 C T RPL24 Silent p.A34A 0.27 TCGA-DK-AA6W-01 3 108300287 108300287 G A KIAA1524 Missense_Mutation p.S175F 0.43 deleterious(0) probably_damaging(0.926) TCGA-DK-AA6W-01 3 113377272 113377272 G A KIAA2018 Missense_Mutation p.S1086F 0.65 probably_damaging(0.999) TCGA-DK-AA6W-01 3 138178026 138178026 C T ESYT3 Intron 0.56 TCGA-DK-AA6W-01 3 139195266 139195266 C T RBP2 Silent p.E12E 0.62 TCGA-DK-AA6W-01 3 139195287 139195287 C G RBP2 Missense_Mutation p.Q5H 0.60 deleterious(0.04) benign(0.199) TCGA-DK-AA6W-01 3 14220352 14220352 G C LSM3 5'UTR 0.65 TCGA-DK-AA6W-01 3 151097931 151097931 C T MED12L Silent p.L1468L 0.24 TCGA-DK-AA6W-01 3 155633812 155633812 C - GMPS Frame_Shift_Del p.N349Mfs*3 0.24 TCGA-DK-AA6W-01 3 182751863 182751863 G C MCCC1 Missense_Mutation p.Q533E 0.82 tolerated(0.24) benign(0.028) TCGA-DK-AA6W-01 3 183643381 183643381 G A ABCC5 Silent p.L1392L 0.37 TCGA-DK-AA6W-01 3 38307727 38307727 G A SLC22A13 Missense_Mutation p.E126K 0.25 deleterious(0.01) possibly_damaging(0.904) TCGA-DK-AA6W-01 3 49932965 49932965 C G MST1R Silent p.L993L 0.80 TCGA-DK-AA6W-01 3 49933651 49933651 C T MST1R Missense_Mutation p.E876K 0.81 tolerated(0.19) possibly_damaging(0.597) TCGA-DK-AA6W-01 3 97311455 97311455 G T EPHA6 Splice_Site p.X796_splice 0.40 TCGA-DK-AA6W-01 3 97887869 97887869 C G OR5H15 Missense_Mutation p.T109S 0.04 tolerated(0.06) benign(0.14) TCGA-DK-AA6W-01 4 121706237 121706237 C T PRDM5 Missense_Mutation p.E400K 0.36 tolerated(0.1) possibly_damaging(0.792) TCGA-DK-AA6W-01 4 123843749 123843749 C G NUDT6 5'UTR 0.62 TCGA-DK-AA6W-01 4 1333014 1333014 C T MAEA 3'UTR 0.22 TCGA-DK-AA6W-01 4 155191082 155191082 C T DCHS2 Missense_Mutation p.D1728N 0.58 tolerated(0.41) benign(0.317) TCGA-DK-AA6W-01 4 155191083 155191083 T A DCHS2 Missense_Mutation p.E1727D 0.57 deleterious(0) probably_damaging(0.913) TCGA-DK-AA6W-01 4 170988503 170988503 C T AADAT Missense_Mutation p.E313K 0.10 tolerated(0.29) benign(0.014) TCGA-DK-AA6W-01 4 185320141 185320141 C G IRF2 Missense_Mutation p.E208Q 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-DK-AA6W-01 4 185650190 185650190 C T CENPU Splice_Site p.X33_splice 0.11 TCGA-DK-AA6W-01 4 54310244 54310244 C G FIP1L1 Missense_Mutation p.S420C 0.09 deleterious(0) possibly_damaging(0.885) TCGA-DK-AA6W-01 4 7741955 7741955 C T SORCS2 Silent p.I1148I 0.46 TCGA-DK-AA6W-01 4 89649709 89649709 C G FAM13A Missense_Mutation p.R1016T 0.31 deleterious(0) possibly_damaging(0.864) TCGA-DK-AA6W-01 5 115168301 115168301 C T ATG12 Missense_Mutation p.E121K 0.42 tolerated(0.05) benign(0.009) TCGA-DK-AA6W-01 5 11565098 11565098 C T CTNND2 Missense_Mutation p.R82Q 0.17 deleterious(0) possibly_damaging(0.768) TCGA-DK-AA6W-01 5 115838018 115838018 T C SEMA6A Missense_Mutation p.K36E 0.42 tolerated(0.05) benign(0.103) TCGA-DK-AA6W-01 5 123980306 123980306 G C ZNF608 Missense_Mutation p.L1252V 0.53 tolerated(0.55) benign(0.109) TCGA-DK-AA6W-01 5 134331986 134331986 C T CATSPER3 Silent p.S92S 0.40 TCGA-DK-AA6W-01 5 135272398 135272398 C A FBXL21 5'Flank 0.35 TCGA-DK-AA6W-01 5 140605048 140605048 G A PCDHB14 Silent p.T657T 0.42 TCGA-DK-AA6W-01 5 140744048 140744048 G C PCDHGA5 Missense_Mutation p.D51H 0.45 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-DK-AA6W-01 5 147506618 147506618 C T SPINK5 Silent p.D1010D 0.24 TCGA-DK-AA6W-01 5 147889528 147889528 G A HTR4 Silent p.N189N 0.40 TCGA-DK-AA6W-01 5 153078545 153078545 G A GRIA1 Missense_Mutation p.R465H 0.29 deleterious(0.01) possibly_damaging(0.82) TCGA-DK-AA6W-01 5 158710291 158710291 C T UBLCP1 Silent p.L291L 0.28 TCGA-DK-AA6W-01 5 160059241 160059241 C T ATP10B Silent p.L505L 0.50 TCGA-DK-AA6W-01 5 16818204 16818204 C T MYO10 Missense_Mutation p.V65M 0.20 deleterious(0.03) possibly_damaging(0.781) TCGA-DK-AA6W-01 5 176477855 176477855 G A ZNF346 Silent p.K207K 0.41 TCGA-DK-AA6W-01 5 178634647 178634647 G A ADAMTS2 Missense_Mutation p.S253L 0.37 tolerated(0.11) benign(0.009) TCGA-DK-AA6W-01 5 179135270 179135270 C G CANX Nonsense_Mutation p.S112* 0.33 TCGA-DK-AA6W-01 5 35667227 35667227 G C SPEF2 Missense_Mutation p.K407N 0.32 deleterious(0.04) possibly_damaging(0.544) TCGA-DK-AA6W-01 5 68487627 68487627 G C CENPH Missense_Mutation p.R47T 0.50 deleterious(0.02) possibly_damaging(0.545) TCGA-DK-AA6W-01 5 90086839 90086839 G A GPR98 Silent p.V4731V 0.39 TCGA-DK-AA6W-01 6 130762434 130762434 A G TMEM200A Silent p.T289T 0.26 TCGA-DK-AA6W-01 6 132030916 132030916 C T CTAGE9 Silent p.E414E 0.42 TCGA-DK-AA6W-01 6 132892203 132892203 G C TAAR6 Missense_Mutation p.R248T 0.32 tolerated(0.07) possibly_damaging(0.783) TCGA-DK-AA6W-01 6 138550950 138550950 A T KIAA1244 Silent p.T127T 0.42 TCGA-DK-AA6W-01 6 152690229 152690229 G A SYNE1 Nonsense_Mutation p.Q3229* 0.55 TCGA-DK-AA6W-01 6 159655130 159655130 C T FNDC1 Silent p.L1196L 0.33 TCGA-DK-AA6W-01 6 168298958 168298958 G C MLLT4 Missense_Mutation p.R464T 0.53 tolerated(0.96) benign(0.394) TCGA-DK-AA6W-01 6 18122786 18122786 C T NHLRC1 Missense_Mutation p.E18K 0.87 deleterious(0) probably_damaging(0.943) TCGA-DK-AA6W-01 6 31474881 31474881 C T MICB Silent p.P232P 0.28 TCGA-DK-AA6W-01 6 32035481 32035481 G A TNXB Silent p.H2167H 0.32 TCGA-DK-AA6W-01 6 51875187 51875187 C T PKHD1 Missense_Mutation p.E1891K 0.40 tolerated(0.32) benign(0.032) TCGA-DK-AA6W-01 6 54191662 54191662 G A TINAG Missense_Mutation p.R191H 0.10 deleterious(0.03) benign(0.062) TCGA-DK-AA6W-01 6 71246060 71246060 C G FAM135A Missense_Mutation p.L1355V 0.73 deleterious(0) possibly_damaging(0.823) TCGA-DK-AA6W-01 6 74210485 74210485 G C MTO1 3'UTR 0.44 TCGA-DK-AA6W-01 6 7583745 7583745 C T DSP Nonsense_Mutation p.Q2084* 0.28 TCGA-DK-AA6W-01 6 90574020 90574020 G A CASP8AP2 RNA 0.44 TCGA-DK-AA6W-01 7 102895314 102895314 C G DPY19L2P2 RNA 0.34 TCGA-DK-AA6W-01 7 106508793 106508793 G A PIK3CG Missense_Mutation p.E263K 0.46 tolerated(0.06) possibly_damaging(0.523) TCGA-DK-AA6W-01 7 111535718 111535718 C G DOCK4 Missense_Mutation p.E513Q 0.31 tolerated(0.1) probably_damaging(0.93) TCGA-DK-AA6W-01 7 116381038 116381038 G A MET Missense_Mutation p.G554R 0.44 tolerated(0.18) possibly_damaging(0.908) TCGA-DK-AA6W-01 7 116411636 116411636 G T MET Missense_Mutation p.V957F 0.17 deleterious(0) possibly_damaging(0.474) TCGA-DK-AA6W-01 7 133884061 133884061 G A LRGUK Silent p.R545R 0.25 TCGA-DK-AA6W-01 7 134618346 134618346 G A CALD1 Missense_Mutation p.E276K 0.29 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA6W-01 7 142988768 142988768 G A CASP2 Missense_Mutation p.M70I 0.49 tolerated(0.07) probably_damaging(0.992) TCGA-DK-AA6W-01 7 150815385 150815385 G C AGAP3 Missense_Mutation p.E265D 0.51 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6W-01 7 150933584 150933584 C T CHPF2 Missense_Mutation p.P307S 0.35 deleterious(0.02) probably_damaging(0.967) TCGA-DK-AA6W-01 7 28858923 28858923 G A CREB5 3'UTR 0.79 TCGA-DK-AA6W-01 7 31102816 31102816 G A ADCYAP1R1 5'UTR 0.44 TCGA-DK-AA6W-01 7 31102867 31102867 G A ADCYAP1R1 5'UTR 0.39 TCGA-DK-AA6W-01 7 50514656 50514656 G A FIGNL1 Silent p.F110F 0.44 TCGA-DK-AA6W-01 7 65227987 65227987 G C SNORA15 3'Flank 0.25 TCGA-DK-AA6W-01 7 73535372 73535372 G A LIMK1 Missense_Mutation p.E592K 0.55 deleterious(0.01) possibly_damaging(0.806) TCGA-DK-AA6W-01 7 91694573 91694573 G C AKAP9 Missense_Mutation p.M2002I 0.38 probably_damaging(0.96) TCGA-DK-AA6W-01 7 92985372 92985372 C T CCDC132 Missense_Mutation p.R919W 0.07 deleterious(0.01) possibly_damaging(0.606) TCGA-DK-AA6W-01 8 10466446 10466446 C A RP1L1 Missense_Mutation p.R1721M 0.06 unknown(0) TCGA-DK-AA6W-01 8 110376836 110376836 G A PKHD1L1 Missense_Mutation p.G45E 0.13 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6W-01 8 110986227 110986227 G A KCNV1 Missense_Mutation p.L131F 0.29 tolerated(0.24) possibly_damaging(0.522) TCGA-DK-AA6W-01 8 133595958 133595958 T C LRRC6 Silent p.R403R 0.29 TCGA-DK-AA6W-01 8 144946044 144946044 C G EPPK1 Missense_Mutation p.E460Q 0.59 benign(0.047) TCGA-DK-AA6W-01 8 145758606 145758606 C G ARHGAP39 Missense_Mutation p.R931T 0.13 deleterious(0.01) benign(0.043) TCGA-DK-AA6W-01 8 146076538 146076538 C G COMMD5 Missense_Mutation p.E62D 0.37 tolerated(0.09) benign(0.004) TCGA-DK-AA6W-01 8 22463627 22463627 C T CCAR2 Missense_Mutation p.P30S 0.34 tolerated_low_confidence(0.2) benign(0.388) TCGA-DK-AA6W-01 8 30699835 30699835 C T TEX15 Missense_Mutation p.M2233I 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-DK-AA6W-01 8 59404265 59404265 G A CYP7A1 Silent p.L428L 0.21 TCGA-DK-AA6W-01 8 90967773 90967773 C T NBN Missense_Mutation p.E379K 0.11 tolerated(0.19) benign(0.284) TCGA-DK-AA6W-01 8 98718938 98718938 C A MTDH Nonsense_Mutation p.S411* 0.13 TCGA-DK-AA6W-01 9 101216318 101216318 G A GABBR2 Missense_Mutation p.T394M 0.45 tolerated(0.12) possibly_damaging(0.575) TCGA-DK-AA6W-01 9 112705326 112705326 C G PALM2 Missense_Mutation p.S286C 0.45 deleterious(0.03) benign(0.423) TCGA-DK-AA6W-01 9 139379184 139379184 G T C9orf163 Missense_Mutation p.G95V 0.44 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DK-AA6W-01 9 15486845 15486845 C A PSIP1 Nonsense_Mutation p.E125* 0.50 TCGA-DK-AA6W-01 9 34402806 34402806 C G FAM219A Splice_Site p.X54_splice 0.73 TCGA-DK-AA6W-01 9 35713028 35713028 C T TLN1 Missense_Mutation p.R1122Q 0.39 tolerated(0.05) possibly_damaging(0.788) TCGA-DK-AA6W-01 9 74971943 74971943 G A ZFAND5 Nonsense_Mutation p.Q133* 0.29 TCGA-DK-AA6W-01 9 95078188 95078188 C T NOL8 Missense_Mutation p.R240K 0.32 tolerated(0.32) benign(0.002) TCGA-DK-AA6W-01 9 99252378 99252378 C T HABP4 3'UTR 0.28 TCGA-DK-AA6W-01 X 10106890 10106890 G C WWC3 Missense_Mutation p.A1000P 0.62 tolerated(0.27) benign(0.077) TCGA-DK-AA6W-01 X 117043445 117043445 G A KLHL13 Silent p.G398G 0.07 TCGA-DK-AA6W-01 X 134856882 134856882 C T CT45A1 3'UTR 0.09 TCGA-DK-AA6W-01 X 135591295 135591295 G C HTATSF1 Missense_Mutation p.E294Q 0.72 deleterious(0.02) probably_damaging(0.984) TCGA-DK-AA6W-01 X 152160217 152160217 G C PNMA5 5'UTR 0.85 TCGA-DK-AA6W-01 X 18936904 18936904 G A PHKA2 Missense_Mutation p.P678S 0.82 tolerated(0.15) benign(0.199) TCGA-DK-AA6W-01 X 44922719 44922726 CAACAGCT - KDM6A Frame_Shift_Del p.P527Rfs*23 0.53 TCGA-DK-AA6W-01 X 53270974 53270974 G C IQSEC2 Missense_Mutation p.L1003V 0.80 deleterious(0) possibly_damaging(0.903) TCGA-DK-AA6W-01 X 75397855 75397855 G A PBDC1 3'UTR 1.00 TCGA-DK-AA6X-01 10 111878395 111878395 G A ADD3 Silent p.L206L 0.27 TCGA-DK-AA6X-01 10 61554234 61554234 G C CCDC6 Missense_Mutation p.I409M 0.14 tolerated(0.11) benign(0.052) TCGA-DK-AA6X-01 10 7618494 7618494 C G ITIH5 Missense_Mutation p.E634Q 0.41 tolerated(0.26) benign(0.06) TCGA-DK-AA6X-01 10 79745843 79745843 G A POLR3A Silent p.N992N 0.06 TCGA-DK-AA6X-01 11 122953884 122953884 C G CLMP Missense_Mutation p.Q196H 0.20 tolerated(0.13) benign(0.006) TCGA-DK-AA6X-01 11 1273632 1273632 C T MUC5B Nonsense_Mutation p.Q4975* 0.27 TCGA-DK-AA6X-01 11 20676318 20676318 C T SLC6A5 Silent p.R766R 0.21 TCGA-DK-AA6X-01 11 49168488 49168488 G C FOLH1 Missense_Mutation p.I691M 0.21 deleterious(0) probably_damaging(0.989) TCGA-DK-AA6X-01 11 62358941 62358941 G A TUT1 Missense_Mutation p.S44L 0.24 deleterious(0.04) benign(0.006) TCGA-DK-AA6X-01 11 65426222 65426222 C G RELA Missense_Mutation p.E211Q 0.24 deleterious(0) probably_damaging(0.991) TCGA-DK-AA6X-01 11 6647596 6647596 C T DCHS1 Missense_Mutation p.R2127H 0.33 tolerated(0.13) benign(0.003) TCGA-DK-AA6X-01 11 71942646 71942646 C T INPPL1 Silent p.I534I 0.25 TCGA-DK-AA6X-01 11 73598435 73598435 G A PAAF1 Missense_Mutation p.G42E 0.18 deleterious(0) possibly_damaging(0.839) TCGA-DK-AA6X-01 11 73829385 73829385 C T C2CD3 Missense_Mutation p.D470N 0.19 tolerated(0.11) benign(0.024) TCGA-DK-AA6X-01 11 73829391 73829391 C T C2CD3 Missense_Mutation p.E468K 0.18 tolerated(0.05) benign(0.138) TCGA-DK-AA6X-01 11 7981266 7981266 T G NLRP10 Silent p.I631I 0.26 TCGA-DK-AA6X-01 11 9444647 9444647 C G IPO7 Missense_Mutation p.S334C 0.18 deleterious(0.03) possibly_damaging(0.89) TCGA-DK-AA6X-01 11 9444670 9444670 C G IPO7 Missense_Mutation p.L342V 0.19 tolerated(0.18) possibly_damaging(0.513) TCGA-DK-AA6X-01 11 9450086 9450086 G A IPO7 Splice_Site p.X446_splice 0.17 TCGA-DK-AA6X-01 11 9450647 9450647 G C IPO7 Missense_Mutation p.E499Q 0.17 tolerated(0.09) benign(0.303) TCGA-DK-AA6X-01 12 12870798 12870798 G T CDKN1B Missense_Mutation p.G9W 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6X-01 12 133306557 133306557 C T ANKLE2 Missense_Mutation p.D731N 0.12 tolerated(1) benign(0) TCGA-DK-AA6X-01 12 21721829 21721829 C T GYS2 Missense_Mutation p.E265K 0.27 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6X-01 12 46321170 46321170 G A SCAF11 Nonsense_Mutation p.Q772* 0.18 TCGA-DK-AA6X-01 12 46321503 46321503 G C SCAF11 Missense_Mutation p.Q661E 0.18 tolerated(0.22) benign(0.087) TCGA-DK-AA6X-01 12 4724844 4724844 G C AKAP3 3'UTR 0.30 TCGA-DK-AA6X-01 12 56482437 56482437 A G ERBB3 Missense_Mutation p.K329E 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-AA6X-01 12 76462749 76462749 C G NAP1L1 Missense_Mutation p.D15H 0.12 deleterious(0) probably_damaging(0.99) TCGA-DK-AA6X-01 12 9317892 9317892 C A PZP Missense_Mutation p.C777F 0.05 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6X-01 13 111287820 111287821 - G CARKD Frame_Shift_Ins p.M222Yfs*5 0.15 TCGA-DK-AA6X-01 14 103805628 103805628 G C EIF5 Missense_Mutation p.K288N 0.19 tolerated(1) benign(0) TCGA-DK-AA6X-01 14 22695130 22695130 C T TRAV36DV7 Silent p.I107I 0.31 TCGA-DK-AA6X-01 14 24459463 24459463 G C DHRS4L2 Missense_Mutation p.Q67H 0.16 deleterious(0.03) benign(0.008) TCGA-DK-AA6X-01 14 74453579 74453579 C G ENTPD5 Missense_Mutation p.E79Q 0.23 tolerated(0.17) possibly_damaging(0.868) TCGA-DK-AA6X-01 14 93650482 93650482 C G MOAP1 Missense_Mutation p.E36Q 0.26 tolerated(0.4) benign(0.036) TCGA-DK-AA6X-01 15 100340261 100340261 G A DNM1P46 RNA 0.15 TCGA-DK-AA6X-01 15 40916379 40916379 C T CASC5 Missense_Mutation p.P1332L 0.14 deleterious(0.03) benign(0.022) TCGA-DK-AA6X-01 15 48053560 48053560 C G SEMA6D Missense_Mutation p.P127A 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6X-01 15 50152669 50152669 G A ATP8B4 Missense_Mutation p.R1101C 0.08 deleterious(0) probably_damaging(0.939) TCGA-DK-AA6X-01 15 52258021 52258021 C G LEO1 Missense_Mutation p.D247H 0.21 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-DK-AA6X-01 16 11862222 11862222 C T ZC3H7A Missense_Mutation p.E437K 0.26 tolerated(0.05) possibly_damaging(0.664) TCGA-DK-AA6X-01 16 15788066 15788066 C T NDE1 Missense_Mutation p.R250W 0.24 deleterious(0.05) probably_damaging(0.929) TCGA-DK-AA6X-01 16 15826519 15826519 C T MYH11 Missense_Mutation p.E1192K 0.18 benign(0.172) TCGA-DK-AA6X-01 16 18877967 18877967 G C SMG1 Nonsense_Mutation p.S1109* 0.15 TCGA-DK-AA6X-01 16 4511769 4511769 G A NMRAL1 3'UTR 0.19 TCGA-DK-AA6X-01 16 47683107 47683107 G A PHKB Missense_Mutation p.D597N 0.14 tolerated(0.06) benign(0.261) TCGA-DK-AA6X-01 16 68961797 68961797 A T TANGO6 Missense_Mutation p.Q818H 0.40 tolerated(0.12) benign(0.001) TCGA-DK-AA6X-01 16 70016564 70016564 C T PDXDC2P RNA 0.19 TCGA-DK-AA6X-01 16 70594438 70594438 T G SF3B3 Missense_Mutation p.Y693D 0.26 deleterious(0) probably_damaging(0.986) TCGA-DK-AA6X-01 16 70599121 70599121 C T SF3B3 Nonsense_Mutation p.Q873* 0.33 TCGA-DK-AA6X-01 17 21147512 21147512 G A C17orf103 Silent p.L43L 0.25 TCGA-DK-AA6X-01 17 29533361 29533361 G A NF1 Missense_Mutation p.G455E 0.24 tolerated(1) benign(0.122) TCGA-DK-AA6X-01 17 40333016 40333016 G A KCNH4 5'UTR 0.19 TCGA-DK-AA6X-01 17 48695429 48695429 C T CACNA1G Silent p.L1749L 0.22 TCGA-DK-AA6X-01 17 48699087 48699087 C A CACNA1G Missense_Mutation p.L1998I 0.27 tolerated(0.66) benign(0.05) TCGA-DK-AA6X-01 17 62022036 62022036 C T SCN4A Silent p.K1303K 0.33 TCGA-DK-AA6X-01 17 73126727 73126727 C G NT5C Missense_Mutation p.E154D 0.10 tolerated(0.39) benign(0.011) TCGA-DK-AA6X-01 17 7504810 7504810 G T FXR2 Missense_Mutation p.L193M 0.26 tolerated(0.77) benign(0.115) TCGA-DK-AA6X-01 17 7507215 7507215 G A FXR2 Silent p.V103V 0.26 TCGA-DK-AA6X-01 17 7577506 7577506 C A TP53 Missense_Mutation p.D259Y 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-DK-AA6X-01 17 79226942 79226942 C T SLC38A10 Missense_Mutation p.V463M 0.15 tolerated(0.44) benign(0.133) TCGA-DK-AA6X-01 18 2673328 2673328 G A SMCHD1 Missense_Mutation p.R158H 0.14 tolerated(0.2) benign(0.011) TCGA-DK-AA6X-01 18 28923764 28923764 A T DSG1 Intron 0.45 TCGA-DK-AA6X-01 18 43523150 43523150 C T EPG5 Silent p.V640V 0.23 TCGA-DK-AA6X-01 18 9954143 9954143 C A VAPA Missense_Mutation p.P274T 0.16 tolerated(0.22) probably_damaging(0.969) TCGA-DK-AA6X-01 19 12792437 12792437 G A DHPS Silent p.A48A 0.22 TCGA-DK-AA6X-01 19 19218830 19218830 G C SLC25A42 Missense_Mutation p.E209Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-DK-AA6X-01 19 36501890 36501890 C A ALKBH6 Missense_Mutation p.R109L 0.17 tolerated(0.29) possibly_damaging(0.543) TCGA-DK-AA6X-01 19 43234029 43234029 G C PSG3 Missense_Mutation p.L297V 0.09 deleterious(0.03) benign(0.361) TCGA-DK-AA6X-01 19 43439832 43439832 G A PSG7 Missense_Mutation p.L52F 0.24 deleterious(0) possibly_damaging(0.758) TCGA-DK-AA6X-01 19 54720950 54720950 G A LILRB3 3'UTR 0.15 TCGA-DK-AA6X-01 19 56934487 56934487 C G ZNF583 Missense_Mutation p.Q154E 0.25 tolerated(0.37) benign(0.001) TCGA-DK-AA6X-01 19 58904758 58904758 C G RPS5 Missense_Mutation p.I117M 0.24 deleterious(0.05) possibly_damaging(0.831) TCGA-DK-AA6X-01 19 9204449 9204449 T A OR1M1 Missense_Mutation p.Y177N 0.14 deleterious(0) probably_damaging(0.946) TCGA-DK-AA6X-01 1 109715149 109715149 A G KIAA1324 Missense_Mutation p.R219G 0.08 deleterious(0) possibly_damaging(0.831) TCGA-DK-AA6X-01 1 111061118 111061118 C G KCNA10 Missense_Mutation p.E98Q 0.28 deleterious(0.05) probably_damaging(0.999) TCGA-DK-AA6X-01 1 1266858 1266858 G T TAS1R3 Nonsense_Mutation p.E45* 0.29 TCGA-DK-AA6X-01 1 1266864 1266864 G A TAS1R3 Missense_Mutation p.E47K 0.36 tolerated(0.19) benign(0.178) TCGA-DK-AA6X-01 1 1267889 1267889 G C TAS1R3 Missense_Mutation p.Q326H 0.30 tolerated(0.67) benign(0.015) TCGA-DK-AA6X-01 1 1267893 1267893 G A TAS1R3 Missense_Mutation p.G328S 0.28 tolerated(0.2) possibly_damaging(0.511) TCGA-DK-AA6X-01 1 1268048 1268048 G T TAS1R3 Missense_Mutation p.Q379H 0.20 tolerated(0.36) benign(0.026) TCGA-DK-AA6X-01 1 1268324 1268324 G A TAS1R3 Silent p.L433L 0.14 TCGA-DK-AA6X-01 1 151318730 151318730 C T RFX5 Missense_Mutation p.E23K 0.22 deleterious(0.04) possibly_damaging(0.501) TCGA-DK-AA6X-01 1 155734816 155734816 G A GON4L Missense_Mutation p.S1483F 0.28 deleterious(0) probably_damaging(0.919) TCGA-DK-AA6X-01 1 159778006 159778006 G C FCRL6 Missense_Mutation p.E31Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-DK-AA6X-01 1 160971140 160971140 G A F11R Missense_Mutation p.S23F 0.17 tolerated(0.34) benign(0.001) TCGA-DK-AA6X-01 1 180158779 180158779 C T QSOX1 Silent p.F370F 0.30 TCGA-DK-AA6X-01 1 205238773 205238773 C T TMCC2 Silent p.S481S 0.33 TCGA-DK-AA6X-01 1 225607066 225607066 A G LBR Missense_Mutation p.I180T 0.20 tolerated(0.28) benign(0.002) TCGA-DK-AA6X-01 1 234561481 234561481 C A TARBP1 Missense_Mutation p.D1128Y 0.16 deleterious(0) possibly_damaging(0.903) TCGA-DK-AA6X-01 1 237777452 237777452 C T RYR2 Missense_Mutation p.A1675V 0.22 probably_damaging(0.971) TCGA-DK-AA6X-01 1 36550617 36550617 G C TEKT2 Missense_Mutation p.R32P 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-DK-AA6X-01 1 949726 949726 C T ISG15 Silent p.F122F 0.32 TCGA-DK-AA6X-01 20 10602012 10602012 G C SLX4IP Missense_Mutation p.E152D 0.24 deleterious(0.01) possibly_damaging(0.86) TCGA-DK-AA6X-01 20 29632705 29632705 G A FRG1B Missense_Mutation p.E174K 0.03 deleterious(0) probably_damaging(0.913) TCGA-DK-AA6X-01 22 50903533 50903533 A C SBF1 Missense_Mutation p.L410R 0.23 deleterious(0) possibly_damaging(0.889) TCGA-DK-AA6X-01 2 153001419 153001419 T A STAM2 Missense_Mutation p.D167V 0.24 deleterious(0.04) probably_damaging(0.948) TCGA-DK-AA6X-01 2 160035087 160035087 A G TANC1 Silent p.P641P 0.16 TCGA-DK-AA6X-01 2 183989128 183989128 C A NUP35 5'UTR 0.24 TCGA-DK-AA6X-01 2 198570427 198570427 C G MARS2 Missense_Mutation p.Q100E 0.18 deleterious(0) possibly_damaging(0.665) TCGA-DK-AA6X-01 2 226516391 226516391 C T NYAP2 3'UTR 0.06 TCGA-DK-AA6X-01 2 234638607 234638607 A G UGT1A3 Missense_Mutation p.I279V 0.32 tolerated(0.05) benign(0.032) TCGA-DK-AA6X-01 2 27448053 27448053 G A CAD Missense_Mutation p.R521K 0.18 tolerated(1) benign(0.001) TCGA-DK-AA6X-01 2 27449410 27449410 G C CAD Silent p.V683V 0.15 TCGA-DK-AA6X-01 2 39064993 39064993 C A DHX57 Missense_Mutation p.G841V 0.22 deleterious(0) probably_damaging(0.95) TCGA-DK-AA6X-01 2 54028697 54028697 C G ERLEC1 Missense_Mutation p.T230R 0.19 deleterious(0) possibly_damaging(0.836) TCGA-DK-AA6X-01 3 111313090 111313090 G A ZBED2 5'UTR 0.24 TCGA-DK-AA6X-01 3 124165703 124165703 G C KALRN Missense_Mutation p.E1173Q 0.20 tolerated(0.09) benign(0.13) TCGA-DK-AA6X-01 3 142266713 142266713 C T ATR Missense_Mutation p.D1071N 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-DK-AA6X-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-DK-AA6X-01 3 183390112 183390112 C G KLHL24 Missense_Mutation p.S481C 0.16 deleterious(0.01) possibly_damaging(0.684) TCGA-DK-AA6X-01 3 38908887 38908887 G T SCN11A Silent p.I1292I 0.15 TCGA-DK-AA6X-01 3 38908899 38908899 G A SCN11A Silent p.F1288F 0.23 TCGA-DK-AA6X-01 3 53757881 53757881 C T CACNA1D Missense_Mutation p.S672L 0.24 deleterious(0) probably_damaging(0.996) TCGA-DK-AA6X-01 3 58107039 58107039 G A FLNB Missense_Mutation p.V979M 0.23 deleterious(0) probably_damaging(0.955) TCGA-DK-AA6X-01 3 64184472 64184472 C T PRICKLE2 Silent p.L44L 0.22 TCGA-DK-AA6X-01 3 89444989 89444989 C G EPHA3 Missense_Mutation p.P437A 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA6X-01 3 9517620 9517620 C T SETD5 Missense_Mutation p.P1392S 0.08 tolerated(0.19) probably_damaging(0.998) TCGA-DK-AA6X-01 4 106640284 106640284 C G GSTCD Missense_Mutation p.S165C 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-DK-AA6X-01 4 106640292 106640292 C T GSTCD Nonsense_Mutation p.Q168* 0.20 TCGA-DK-AA6X-01 4 170523226 170523226 C A NEK1 Missense_Mutation p.R49S 0.15 deleterious(0.01) benign(0.426) TCGA-DK-AA6X-01 4 9922163 9922163 G A SLC2A9 Missense_Mutation p.S283F 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-DK-AA6X-01 5 154183239 154183239 C G LARP1 Silent p.L714L 0.14 TCGA-DK-AA6X-01 6 117244379 117244379 C G RFX6 Missense_Mutation p.S516C 0.21 deleterious(0.04) benign(0.024) TCGA-DK-AA6X-01 6 137814971 137814971 C T OLIG3 Missense_Mutation p.A113T 0.16 deleterious(0) possibly_damaging(0.654) TCGA-DK-AA6X-01 6 150057650 150057650 T C NUP43 Silent p.Q249Q 0.28 TCGA-DK-AA6X-01 6 24850879 24850879 C A FAM65B Missense_Mutation p.W248C 0.18 deleterious(0) probably_damaging(1) TCGA-DK-AA6X-01 6 26043546 26043546 C T HIST1H2BB Missense_Mutation p.E114K 0.15 tolerated_low_confidence(0.07) benign(0.003) TCGA-DK-AA6X-01 6 27839802 27839802 C T HIST1H3I Missense_Mutation p.E98K 0.24 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DK-AA6X-01 6 32088620 32088620 C T ATF6B Missense_Mutation p.V254I 0.18 tolerated(0.11) benign(0.033) TCGA-DK-AA6X-01 6 35980097 35980097 C G SLC26A8 Missense_Mutation p.E81Q 0.18 tolerated(0.12) possibly_damaging(0.457) TCGA-DK-AA6X-01 6 38548069 38548069 G A BTBD9 Missense_Mutation p.S320F 0.25 deleterious(0.02) unknown(0) TCGA-DK-AA6X-01 6 83898500 83898500 T C PGM3 Silent p.K102K 0.13 TCGA-DK-AA6X-01 7 103032095 103032095 G A SLC26A5 Nonsense_Mutation p.Q403* 0.36 TCGA-DK-AA6X-01 7 117243593 117243593 C G CFTR Missense_Mutation p.L889V 0.24 tolerated(0.51) benign(0.003) TCGA-DK-AA6X-01 7 128371228 128371228 C T FAM71F1 3'UTR 0.28 TCGA-DK-AA6X-01 7 141768492 141768492 G A MGAM Intron 0.24 TCGA-DK-AA6X-01 7 150037207 150037207 G A RARRES2 Silent p.C87C 0.22 TCGA-DK-AA6X-01 7 151851516 151851516 C T KMT2C Missense_Mutation p.C3992Y 0.21 benign(0.005) TCGA-DK-AA6X-01 7 20420393 20420393 C A ITGB8 Missense_Mutation p.S247Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-DK-AA6X-01 7 44120443 44120443 C T POLM Missense_Mutation p.M87I 0.22 tolerated(0.39) benign(0.005) TCGA-DK-AA6X-01 7 62752087 62752087 G A ZNF733P RNA 0.26 TCGA-DK-AA6X-01 7 64439662 64439662 G A ZNF117 Missense_Mutation p.S96L 0.06 tolerated(0.24) benign(0.005) TCGA-DK-AA6X-01 8 124796788 124796788 C G FAM91A1 Nonsense_Mutation p.S261* 0.22 TCGA-DK-AA6X-01 8 25293948 25293948 C A KCTD9 Nonsense_Mutation p.E185* 0.17 TCGA-DK-AA6X-01 9 125588973 125588973 G A PDCL Nonsense_Mutation p.R32* 0.28 TCGA-DK-AA6X-01 9 135202654 135202654 G A SETX Missense_Mutation p.S1444F 0.24 deleterious(0.03) possibly_damaging(0.77) TCGA-DK-AA6X-01 9 34691173 34691173 G C CCL19 5'UTR 0.40 TCGA-DK-AA6X-01 X 44938459 44938459 C T KDM6A Nonsense_Mutation p.Q1003* 0.54 TCGA-DK-AA71-01 10 101816871 101816871 C G CPN1 Missense_Mutation p.E304Q 0.21 deleterious(0) probably_damaging(0.92) TCGA-DK-AA71-01 10 105193702 105193702 C T PDCD11 Intron 0.18 TCGA-DK-AA71-01 10 105927441 105927441 C T WDR96 Missense_Mutation p.E916K 0.49 tolerated(0.27) benign(0.05) TCGA-DK-AA71-01 10 106059004 106059004 C T GSTO2 Nonsense_Mutation p.Q232* 0.50 TCGA-DK-AA71-01 10 106059150 106059150 C G GSTO2 3'UTR 0.62 TCGA-DK-AA71-01 10 114186049 114186049 G C ACSL5 Missense_Mutation p.D647H 0.49 deleterious(0) probably_damaging(0.914) TCGA-DK-AA71-01 10 114711348 114711348 C G TCF7L2 Silent p.L121L 0.27 TCGA-DK-AA71-01 10 115663332 115663332 G A NHLRC2 Missense_Mutation p.G514E 0.24 tolerated(0.07) probably_damaging(0.973) TCGA-DK-AA71-01 10 116195995 116195995 C G ABLIM1 3'UTR 0.18 TCGA-DK-AA71-01 10 119044967 119044967 G A PDZD8 Missense_Mutation p.S426L 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 10 119044972 119044972 G A PDZD8 Silent p.I424I 0.23 TCGA-DK-AA71-01 10 119303150 119303150 C A EMX2 Silent p.I124I 0.59 TCGA-DK-AA71-01 10 121182722 121182722 G A GRK5 Silent p.Q128Q 0.18 TCGA-DK-AA71-01 10 124909368 124909368 C G HMX2 Missense_Mutation p.S184C 0.42 deleterious(0) probably_damaging(0.996) TCGA-DK-AA71-01 10 125804139 125804139 G A CHST15 Silent p.F281F 0.31 TCGA-DK-AA71-01 10 128841364 128841364 C T DOCK1 Nonsense_Mutation p.Q692* 0.23 TCGA-DK-AA71-01 10 16990542 16990542 C G CUBN Missense_Mutation p.R1715T 0.15 tolerated(0.12) possibly_damaging(0.854) TCGA-DK-AA71-01 10 31809256 31809256 G C ZEB1 Missense_Mutation p.K332N 0.31 deleterious(0) probably_damaging(0.998) TCGA-DK-AA71-01 10 35929202 35929202 C A FZD8 Missense_Mutation p.V386L 0.41 tolerated(0.49) benign(0.243) TCGA-DK-AA71-01 10 50824128 50824128 G A CHAT Intron 0.46 TCGA-DK-AA71-01 10 51768760 51768760 G A AGAP6 Missense_Mutation p.R292Q 0.32 deleterious(0.04) benign(0.378) TCGA-DK-AA71-01 10 52390274 52390274 C T RP11-50E11.3 RNA 0.55 TCGA-DK-AA71-01 10 61828486 61828486 C T ANK3 Silent p.T4051T 0.23 TCGA-DK-AA71-01 10 62637763 62637763 G C RHOBTB1 Silent p.L543L 0.14 TCGA-DK-AA71-01 10 72164229 72164229 C T EIF4EBP2 Silent p.I24I 0.46 TCGA-DK-AA71-01 10 74326388 74326388 C T MICU1 Intron 0.27 TCGA-DK-AA71-01 10 7786167 7786167 G A ITIH2 Missense_Mutation p.E778K 0.31 deleterious(0.04) benign(0.047) TCGA-DK-AA71-01 10 86017661 86017661 C G RGR Missense_Mutation p.L219V 0.17 tolerated(0.08) benign(0.041) TCGA-DK-AA71-01 10 89514312 89514312 G C ATAD1 3'UTR 0.71 TCGA-DK-AA71-01 10 91371549 91371549 G A PANK1 Silent p.F320F 0.59 TCGA-DK-AA71-01 10 91479229 91479229 C T KIF20B Silent p.V496V 0.50 TCGA-DK-AA71-01 10 93723915 93723915 C T BTAF1 Missense_Mutation p.L496F 0.49 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.22 TCGA-DK-AA71-01 11 10014058 10014058 C T SBF2 Silent p.E400E 0.47 TCGA-DK-AA71-01 11 102595633 102595633 C G MMP8 5'UTR 0.26 TCGA-DK-AA71-01 11 104900587 104900587 C T CASP1 Missense_Mutation p.E223K 0.49 deleterious(0.01) benign(0.342) TCGA-DK-AA71-01 11 10800308 10800308 G T CTR9 Missense_Mutation p.D1060Y 0.25 deleterious(0.01) probably_damaging(0.92) TCGA-DK-AA71-01 11 10825596 10825596 G C EIF4G2 Silent p.V184V 0.34 TCGA-DK-AA71-01 11 113674600 113674600 C G USP28 Splice_Site p.X887_splice 0.36 TCGA-DK-AA71-01 11 113934320 113934320 G C ZBTB16 Missense_Mutation p.D100H 0.35 deleterious(0.02) probably_damaging(0.991) TCGA-DK-AA71-01 11 114441858 114441858 C G NXPE4 Missense_Mutation p.E479D 0.22 tolerated(0.11) benign(0.143) TCGA-DK-AA71-01 11 115111050 115111050 G C CADM1 Missense_Mutation p.S72C 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-DK-AA71-01 11 117780580 117780580 G T TMPRSS13 Silent p.I350I 0.14 TCGA-DK-AA71-01 11 119217081 119217081 C A MFRP Nonsense_Mutation p.E20* 0.61 TCGA-DK-AA71-01 11 11957849 11957849 G A USP47 Splice_Site p.X556_splice 0.44 TCGA-DK-AA71-01 11 11958017 11958017 G A USP47 Silent p.T611T 0.46 TCGA-DK-AA71-01 11 122830191 122830191 G A C11orf63 3'UTR 0.26 TCGA-DK-AA71-01 11 12284142 12284142 G A MICAL2 Intron 0.33 TCGA-DK-AA71-01 11 123676134 123676134 C T OR6M1 Silent p.L308L 0.51 TCGA-DK-AA71-01 11 125848251 125848251 G C CDON Missense_Mutation p.Q1102E 0.21 deleterious(0.02) benign(0.41) TCGA-DK-AA71-01 11 126276349 126276349 C A ST3GAL4 Intron 0.06 TCGA-DK-AA71-01 11 129734741 129734741 C T NFRKB Missense_Mutation p.R1285H 0.55 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DK-AA71-01 11 14284383 14284383 G A RP11-21L19.1 3'Flank 0.19 TCGA-DK-AA71-01 11 16863215 16863215 G C PLEKHA7 Missense_Mutation p.Q251E 0.28 deleterious(0.01) benign(0.282) TCGA-DK-AA71-01 11 17115889 17115889 G A PIK3C2A Missense_Mutation p.S1457L 0.44 tolerated(0.07) benign(0.314) TCGA-DK-AA71-01 11 17483349 17483349 C T ABCC8 Silent p.P201P 0.48 TCGA-DK-AA71-01 11 17533513 17533513 T A USH1C Missense_Mutation p.Y450F 0.49 deleterious_low_confidence(0.05) benign(0.058) TCGA-DK-AA71-01 11 22398124 22398124 G A SLC17A6 Missense_Mutation p.R440K 0.50 deleterious(0) benign(0.189) TCGA-DK-AA71-01 11 28098656 28098656 C A KIF18A Silent p.L441L 0.20 TCGA-DK-AA71-01 11 30032768 30032768 G A KCNA4 Silent p.F486F 0.29 TCGA-DK-AA71-01 11 30914523 30914523 C G DCDC1 Missense_Mutation p.E1639Q 0.29 tolerated(0.22) benign(0.001) TCGA-DK-AA71-01 11 33090319 33090319 C T TCP11L1 Missense_Mutation p.S414F 0.43 deleterious(0) possibly_damaging(0.555) TCGA-DK-AA71-01 11 4471266 4471266 C G OR52K2 Missense_Mutation p.Q233E 0.49 deleterious(0.01) benign(0.217) TCGA-DK-AA71-01 11 44959862 44959862 G C TP53I11 Missense_Mutation p.L9V 0.62 deleterious(0) probably_damaging(0.998) TCGA-DK-AA71-01 11 47359017 47359017 C G MYBPC3 Missense_Mutation p.E843Q 0.24 tolerated(0.11) probably_damaging(1) TCGA-DK-AA71-01 11 47843689 47843689 C T NUP160 Missense_Mutation p.E377K 0.28 deleterious(0.01) probably_damaging(0.934) TCGA-DK-AA71-01 11 48266718 48266718 G A OR4X2 Silent p.V21V 0.17 TCGA-DK-AA71-01 11 49179593 49179593 C G FOLH1 Silent p.L481L 0.45 TCGA-DK-AA71-01 11 55111449 55111449 G C OR4A16 Missense_Mutation p.R258T 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA71-01 11 57457840 57457840 C T ZDHHC5 Silent p.F197F 0.26 TCGA-DK-AA71-01 11 5799507 5799507 C G OR52N5 Missense_Mutation p.E120Q 0.41 deleterious(0.02) possibly_damaging(0.725) TCGA-DK-AA71-01 11 59377970 59377970 G T OSBP Missense_Mutation p.S152Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-DK-AA71-01 11 61558068 61558068 C T TMEM258 Missense_Mutation p.E4K 0.21 tolerated(0.25) benign(0.116) TCGA-DK-AA71-01 11 62346211 62346211 C T TUT1 Missense_Mutation p.E366K 0.40 tolerated(0.15) benign(0.392) TCGA-DK-AA71-01 11 62472829 62472829 G C BSCL2 Missense_Mutation p.F116L 0.24 deleterious(0.03) possibly_damaging(0.775) TCGA-DK-AA71-01 11 64111520 64111520 G A CCDC88B Missense_Mutation p.E503K 0.21 tolerated(0.88) benign(0.003) TCGA-DK-AA71-01 11 64118968 64118968 G A CCDC88B Silent p.E993E 0.50 TCGA-DK-AA71-01 11 64361012 64361012 G C SLC22A12 Missense_Mutation p.M214I 0.53 tolerated(1) benign(0.006) TCGA-DK-AA71-01 11 64950979 64950979 C T CAPN1 Silent p.L124L 0.21 TCGA-DK-AA71-01 11 65265333 65265333 G A MALAT1 RNA 0.57 TCGA-DK-AA71-01 11 65734819 65734819 C T SART1 Silent p.L426L 0.52 TCGA-DK-AA71-01 11 66334977 66334977 C T CTSF Missense_Mutation p.D157N 0.47 deleterious(0.02) possibly_damaging(0.848) TCGA-DK-AA71-01 11 66617712 66617712 C T PC Silent p.Q899Q 0.47 TCGA-DK-AA71-01 11 68748396 68748396 C G MRGPRD Silent p.G20G 0.31 TCGA-DK-AA71-01 11 721669 721669 G A EPS8L2 Silent p.K291K 0.58 TCGA-DK-AA71-01 11 722530 722530 G C EPS8L2 Missense_Mutation p.E397Q 0.43 deleterious(0) possibly_damaging(0.752) TCGA-DK-AA71-01 11 73997022 73997022 G C P4HA3 Silent p.L314L 0.29 TCGA-DK-AA71-01 11 74717007 74717007 G A NEU3 Missense_Mutation p.E286K 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-DK-AA71-01 11 760226 760226 C T TALDO1 Missense_Mutation p.S145L 0.48 deleterious(0) probably_damaging(0.991) TCGA-DK-AA71-01 11 8413934 8413934 G C STK33 3'UTR 0.50 TCGA-DK-AA71-01 11 89224388 89224388 G A NOX4 Silent p.L9L 0.53 TCGA-DK-AA71-01 11 9101036 9101036 C G SCUBE2 Missense_Mutation p.E93Q 0.44 tolerated(0.07) benign(0.425) TCGA-DK-AA71-01 11 94180495 94180495 G A MRE11A Missense_Mutation p.S558F 0.48 deleterious(0) probably_damaging(0.968) TCGA-DK-AA71-01 12 100657358 100657358 G C DEPDC4 Silent p.L157L 0.34 TCGA-DK-AA71-01 12 104340666 104340666 G A HSP90B1 Missense_Mutation p.D737N 0.31 tolerated(0.29) benign(0.048) TCGA-DK-AA71-01 12 105282822 105282822 G C SLC41A2 Missense_Mutation p.S290C 0.55 deleterious(0.02) benign(0.199) TCGA-DK-AA71-01 12 106500216 106500216 G C NUAK1 Missense_Mutation p.L110V 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-DK-AA71-01 12 107393524 107393524 G T CRY1 Silent p.I314I 0.50 TCGA-DK-AA71-01 12 110783911 110783911 C G ATP2A2 Silent p.V949V 0.48 TCGA-DK-AA71-01 12 110968467 110968467 G A RAD9B Intron 0.50 TCGA-DK-AA71-01 12 113303265 113303265 G A RPH3A Missense_Mutation p.D93N 0.30 tolerated(0.36) probably_damaging(0.939) TCGA-DK-AA71-01 12 113537843 113537843 C G RASAL1 Missense_Mutation p.R771T 0.25 tolerated(0.5) benign(0.131) TCGA-DK-AA71-01 12 119909871 119909871 G C CCDC60 Missense_Mutation p.K81N 0.27 deleterious(0.05) probably_damaging(0.928) TCGA-DK-AA71-01 12 121476721 121476721 G A OASL Silent p.F18F 0.47 TCGA-DK-AA71-01 12 122395036 122395036 C G WDR66 Missense_Mutation p.S531C 0.29 deleterious(0.03) possibly_damaging(0.469) TCGA-DK-AA71-01 12 123011521 123011521 G A RSRC2 5'UTR 0.33 TCGA-DK-AA71-01 12 123482009 123482009 C T PITPNM2 Silent p.K445K 0.45 TCGA-DK-AA71-01 12 123706366 123706366 G A MPHOSPH9 5'UTR 0.59 TCGA-DK-AA71-01 12 12640040 12640040 G A DUSP16 Missense_Mutation p.H205Y 0.56 deleterious(0) probably_damaging(0.995) TCGA-DK-AA71-01 12 13229072 13229072 C T KIAA1467 Missense_Mutation p.S546L 0.17 deleterious(0) benign(0.089) TCGA-DK-AA71-01 12 132399690 132399690 C T ULK1 Missense_Mutation p.S479L 0.30 tolerated(0.09) possibly_damaging(0.878) TCGA-DK-AA71-01 12 21448564 21448564 G A SLCO1A2 Missense_Mutation p.S413F 0.46 tolerated(0.42) benign(0.012) TCGA-DK-AA71-01 12 26639144 26639144 C T ITPR2 Missense_Mutation p.E1902K 0.50 tolerated(0.47) benign(0.002) TCGA-DK-AA71-01 12 26749849 26749849 C T ITPR2 Silent p.V1407V 0.10 TCGA-DK-AA71-01 12 27075611 27075611 G C ASUN Missense_Mutation p.S276C 0.51 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 12 27540167 27540167 G C ARNTL2 Missense_Mutation p.E191Q 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-DK-AA71-01 12 2908379 2908379 G C FKBP4 Missense_Mutation p.G214R 0.46 deleterious(0.01) probably_damaging(0.982) TCGA-DK-AA71-01 12 2909244 2909244 G A FKBP4 Missense_Mutation p.E268K 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-DK-AA71-01 12 2909647 2909647 G C FKBP4 Missense_Mutation p.Q312H 0.70 deleterious(0.03) benign(0.001) TCGA-DK-AA71-01 12 2909743 2909743 G C FKBP4 Missense_Mutation p.K344N 0.63 deleterious(0.02) probably_damaging(0.94) TCGA-DK-AA71-01 12 41967536 41967536 C T PDZRN4 Silent p.I985I 0.38 TCGA-DK-AA71-01 12 48369760 48369760 C T COL2A1 Missense_Mutation p.E1195K 0.53 unknown(0) TCGA-DK-AA71-01 12 48534633 48534633 C G PFKM Missense_Mutation p.F511L 0.46 deleterious(0.02) probably_damaging(1) TCGA-DK-AA71-01 12 48880470 48880470 G A C12orf54 Splice_Site p.X33_splice 0.51 TCGA-DK-AA71-01 12 48880471 48880471 G A C12orf54 Missense_Mutation p.E33K 0.50 tolerated(0.12) possibly_damaging(0.801) TCGA-DK-AA71-01 12 49251878 49251878 G A RND1 Silent p.V200V 0.53 TCGA-DK-AA71-01 12 49308346 49308346 G A CCDC65 Missense_Mutation p.E154K 0.40 tolerated(0.16) benign(0.02) TCGA-DK-AA71-01 12 49420733 49420733 C A KMT2D Nonsense_Mutation p.E5006* 0.17 TCGA-DK-AA71-01 12 49436370 49436370 G C KMT2D Silent p.L1947L 0.20 TCGA-DK-AA71-01 12 49935453 49935453 G A KCNH3 Silent p.K117K 0.16 TCGA-DK-AA71-01 12 50501537 50501537 G A GPD1 Missense_Mutation p.G267E 0.50 deleterious(0) probably_damaging(0.97) TCGA-DK-AA71-01 12 51636317 51636317 C T DAZAP2 Missense_Mutation p.H169Y 0.31 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-DK-AA71-01 12 52200092 52200092 A - SCN8A Frame_Shift_Del p.K1608Nfs*23 0.26 TCGA-DK-AA71-01 12 52627197 52627197 C G KRT7 Silent p.L39L 0.19 TCGA-DK-AA71-01 12 52882231 52882231 C T KRT6A Silent p.Q435Q 0.37 TCGA-DK-AA71-01 12 53459652 53459652 C G SPRYD3 Missense_Mutation p.E431D 0.47 deleterious(0) probably_damaging(0.991) TCGA-DK-AA71-01 12 53607432 53607432 G A RARG Missense_Mutation p.S289F 0.51 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 12 53910934 53910934 G A ATF7 Missense_Mutation p.S480F 0.36 deleterious_low_confidence(0) benign(0.365) TCGA-DK-AA71-01 12 53931243 53931243 C G ATF7 Missense_Mutation p.D120H 0.34 deleterious(0.02) possibly_damaging(0.689) TCGA-DK-AA71-01 12 54403170 54403170 G C HOXC8 Missense_Mutation p.R34S 0.25 tolerated(0.66) benign(0.004) TCGA-DK-AA71-01 12 54403342 54403342 G A HOXC8 Missense_Mutation p.E92K 0.24 deleterious(0.01) benign(0.189) TCGA-DK-AA71-01 12 54403395 54403395 G A HOXC8 Silent p.V109V 0.21 TCGA-DK-AA71-01 12 54404977 54404977 G A HOXC8 Missense_Mutation p.E181K 0.18 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 12 57436867 57436867 C T MYO1A Missense_Mutation p.E363K 0.65 tolerated(0.09) benign(0.048) TCGA-DK-AA71-01 12 57437111 57437111 C G MYO1A Missense_Mutation p.L308F 0.61 deleterious(0.01) probably_damaging(0.924) TCGA-DK-AA71-01 12 57437642 57437642 C T MYO1A Missense_Mutation p.R297K 0.61 tolerated(1) benign(0.002) TCGA-DK-AA71-01 12 57969881 57969881 G A KIF5A Missense_Mutation p.E679K 0.61 tolerated(0.24) benign(0.004) TCGA-DK-AA71-01 12 6127746 6127746 G C VWF Missense_Mutation p.S1613C 0.17 deleterious(0) probably_damaging(0.932) TCGA-DK-AA71-01 12 63328394 63328394 G A PPM1H Silent p.Y41Y 0.56 TCGA-DK-AA71-01 12 66597517 66597517 G A IRAK3 Missense_Mutation p.D54N 0.59 deleterious(0) probably_damaging(0.96) TCGA-DK-AA71-01 12 66788114 66788114 C G GRIP1 Missense_Mutation p.G616A 0.59 deleterious(0.01) probably_damaging(0.942) TCGA-DK-AA71-01 12 69652651 69652651 C T CPSF6 Missense_Mutation p.R326C 0.24 tolerated(0.2) unknown(0) TCGA-DK-AA71-01 12 72666921 72666921 G T TRHDE Silent p.S121S 0.21 TCGA-DK-AA71-01 12 77436963 77436963 G A E2F7 Silent p.L335L 0.32 TCGA-DK-AA71-01 12 85546847 85546847 A T LRRIQ1 Missense_Mutation p.S1489C 0.37 tolerated(0.18) possibly_damaging(0.867) TCGA-DK-AA71-01 12 92818616 92818616 C G CLLU1 Missense_Mutation p.Q54E 0.13 benign(0.095) TCGA-DK-AA71-01 12 94673270 94673270 A C PLXNC1 Missense_Mutation p.K1207T 0.17 tolerated(0.11) benign(0.34) TCGA-DK-AA71-01 12 98909632 98909632 C T TMPO 5'UTR 0.44 TCGA-DK-AA71-01 13 102521171 102521171 G A FGF14 Silent p.F109F 0.81 TCGA-DK-AA71-01 13 20224232 20224232 G A MPHOSPH8 Missense_Mutation p.E470K 0.26 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-DK-AA71-01 13 21619974 21619974 C T LATS2 Missense_Mutation p.M64I 0.27 tolerated_low_confidence(0.36) benign(0.008) TCGA-DK-AA71-01 13 25281203 25281203 C T ATP12A Missense_Mutation p.P744S 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 13 25480014 25480014 C G CENPJ Missense_Mutation p.R721T 0.32 tolerated(0.49) benign(0.001) TCGA-DK-AA71-01 13 26975743 26975743 C T CDK8 Silent p.I417I 0.31 TCGA-DK-AA71-01 13 30097547 30097547 A C SLC7A1 Missense_Mutation p.F302C 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-DK-AA71-01 13 31035517 31035517 C A HMGB1 Nonsense_Mutation p.E209* 0.50 TCGA-DK-AA71-01 13 32915310 32915310 G A BRCA2 Missense_Mutation p.R2273K 0.24 tolerated(0.07) benign(0.373) TCGA-DK-AA71-01 13 33016908 33016908 G C N4BP2L2 Missense_Mutation p.S589C 0.35 tolerated(0.23) benign(0.003) TCGA-DK-AA71-01 13 36049907 36049907 G A MAB21L1 Silent p.L123L 0.16 TCGA-DK-AA71-01 13 41808097 41808097 C T MTRF1 Missense_Mutation p.R306Q 0.28 deleterious(0.02) possibly_damaging(0.668) TCGA-DK-AA71-01 13 43181119 43181119 G C TNFSF11 3'UTR 0.34 TCGA-DK-AA71-01 13 48985612 48985612 G T LPAR6 Missense_Mutation p.F316L 0.54 tolerated(0.65) benign(0.003) TCGA-DK-AA71-01 13 50366712 50366712 G T KPNA3 5'UTR 0.62 TCGA-DK-AA71-01 13 50586460 50586460 C G TRIM13 Missense_Mutation p.F131L 0.27 tolerated(0.32) benign(0.255) TCGA-DK-AA71-01 13 53030677 53030677 C G CKAP2 Silent p.L30L 0.48 TCGA-DK-AA71-01 13 73649902 73649902 G A KLF5 Missense_Mutation p.D418N 0.24 deleterious(0) probably_damaging(0.971) TCGA-DK-AA71-01 13 75861111 75861111 C T TBC1D4 Silent p.L1238L 0.72 TCGA-DK-AA71-01 13 76055517 76055517 G A TBC1D4 Silent p.F129F 0.73 TCGA-DK-AA71-01 13 77575057 77575057 G A CLN5 Missense_Mutation p.E393K 0.07 deleterious(0.01) probably_damaging(0.948) TCGA-DK-AA71-01 13 96743782 96743782 C G HS6ST3 Missense_Mutation p.I222M 0.69 tolerated(0.14) possibly_damaging(0.747) TCGA-DK-AA71-01 14 102605615 102605615 C T HSP90AA1 Missense_Mutation p.E43K 0.58 unknown(0) TCGA-DK-AA71-01 14 102807825 102807825 G A ZNF839 Missense_Mutation p.R698Q 0.20 tolerated(1) benign(0.011) TCGA-DK-AA71-01 14 103395131 103395131 C G AMN Missense_Mutation p.S111C 0.12 tolerated(0.07) benign(0.025) TCGA-DK-AA71-01 14 104026027 104026027 G A BAG5 3'UTR 0.62 TCGA-DK-AA71-01 14 20915369 20915369 G T OSGEP 3'UTR 0.53 TCGA-DK-AA71-01 14 21681214 21681214 G A HNRNPC Missense_Mutation p.S156L 0.60 tolerated(1) benign(0.014) TCGA-DK-AA71-01 14 23467812 23467812 C T C14orf93 Missense_Mutation p.V141M 0.29 tolerated_low_confidence(0.07) benign(0.186) TCGA-DK-AA71-01 14 23745143 23745143 C G HOMEZ Missense_Mutation p.D432H 0.64 deleterious(0.02) probably_damaging(0.94) TCGA-DK-AA71-01 14 23745923 23745923 G C HOMEZ Missense_Mutation p.L172V 0.22 tolerated(0.51) benign(0.017) TCGA-DK-AA71-01 14 24546431 24546431 C T CPNE6 Silent p.I456I 0.30 TCGA-DK-AA71-01 14 25101122 25101122 T C GZMB Missense_Mutation p.Y181C 0.05 deleterious(0.01) possibly_damaging(0.87) TCGA-DK-AA71-01 14 33015625 33015627 ACA - AKAP6 In_Frame_Del p.N590del 0.29 TCGA-DK-AA71-01 14 35050789 35050789 G A SNX6 Missense_Mutation p.S283L 0.48 deleterious(0.01) benign(0.124) TCGA-DK-AA71-01 14 38064163 38064163 C T FOXA1 Silent p.V5V 0.50 TCGA-DK-AA71-01 14 39597544 39597544 C G GEMIN2 Missense_Mutation p.P209A 0.58 tolerated(0.17) benign(0.06) TCGA-DK-AA71-01 14 42356266 42356266 C G LRFN5 Silent p.V146V 0.32 TCGA-DK-AA71-01 14 42356473 42356473 C T LRFN5 Silent p.L215L 0.32 TCGA-DK-AA71-01 14 45581661 45581661 G C PRPF39 Missense_Mutation p.Q571H 0.36 deleterious(0.01) benign(0.107) TCGA-DK-AA71-01 14 58604761 58604761 G C C14orf37 Missense_Mutation p.S439C 0.48 deleterious(0.01) possibly_damaging(0.843) TCGA-DK-AA71-01 14 62229256 62229256 C T SNAPC1 Silent p.F26F 0.36 TCGA-DK-AA71-01 14 63749851 63749851 G A RHOJ Missense_Mutation p.D139N 0.41 tolerated(0.11) possibly_damaging(0.536) TCGA-DK-AA71-01 14 64484319 64484319 G A SYNE2 Missense_Mutation p.E1632K 0.35 probably_damaging(0.999) TCGA-DK-AA71-01 14 65251082 65251082 C A SPTB Silent p.L1295L 0.52 TCGA-DK-AA71-01 14 70712718 70712718 G C ADAM21P1 RNA 0.05 TCGA-DK-AA71-01 14 74824927 74824927 G C VRTN Missense_Mutation p.E481Q 0.45 tolerated(0.34) benign(0.007) TCGA-DK-AA71-01 14 74825102 74825102 C T VRTN Missense_Mutation p.S539F 0.51 deleterious(0.01) probably_damaging(0.963) TCGA-DK-AA71-01 14 82000021 82000021 G A SEL1L Missense_Mutation p.S23L 0.79 tolerated_low_confidence(0.12) benign(0.037) TCGA-DK-AA71-01 14 95030380 95030380 G C SERPINA4 Missense_Mutation p.K187N 0.31 tolerated(0.07) benign(0.183) TCGA-DK-AA71-01 14 95080746 95080746 G A SERPINA3 5'UTR 0.56 TCGA-DK-AA71-01 15 101550736 101550736 G A LRRK1 Silent p.L357L 0.24 TCGA-DK-AA71-01 15 102249040 102249040 C G TARSL2 Missense_Mutation p.E296Q 0.35 tolerated(0.07) benign(0.132) TCGA-DK-AA71-01 15 25451244 25451244 G C SNORD115-22 5'Flank 0.26 TCGA-DK-AA71-01 15 28362244 28362244 G A HERC2 Silent p.V4443V 0.36 TCGA-DK-AA71-01 15 31332492 31332492 C T TRPM1 Silent p.Q732Q 0.52 TCGA-DK-AA71-01 15 40849391 40849391 G A C15orf57 Intron 0.18 TCGA-DK-AA71-01 15 40942570 40942570 G C CASC5 Missense_Mutation p.E2082Q 0.58 deleterious(0.01) probably_damaging(0.972) TCGA-DK-AA71-01 15 41797425 41797425 C A LTK Nonsense_Mutation p.E636* 0.30 TCGA-DK-AA71-01 15 42173411 42173411 G C SPTBN5 Missense_Mutation p.P827A 0.15 benign(0.225) TCGA-DK-AA71-01 15 42564299 42564299 C G TMEM87A Missense_Mutation p.G56A 0.46 tolerated(0.14) benign(0.146) TCGA-DK-AA71-01 15 43928013 43928013 G C CATSPER2 Missense_Mutation p.Q345E 0.30 deleterious(0) possibly_damaging(0.542) TCGA-DK-AA71-01 15 43990904 43990904 C T CKMT1A Silent p.D359D 0.05 TCGA-DK-AA71-01 15 48444122 48444122 G A MYEF2 Silent p.L386L 0.20 TCGA-DK-AA71-01 15 50595285 50595285 C G GABPB1 Missense_Mutation p.K104N 0.12 tolerated(0.06) possibly_damaging(0.614) TCGA-DK-AA71-01 15 54614259 54614259 C T UNC13C Missense_Mutation p.S1464F 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DK-AA71-01 15 59808941 59808941 G C FAM81A Missense_Mutation p.R295T 0.43 tolerated(0.12) benign(0.208) TCGA-DK-AA71-01 15 60849093 60849093 G A RORA Missense_Mutation p.S85L 0.47 tolerated(0.28) benign(0.005) TCGA-DK-AA71-01 15 63883080 63883080 C T USP3 3'UTR 0.21 TCGA-DK-AA71-01 15 63916006 63916006 C T HERC1 Missense_Mutation p.R4510Q 0.43 probably_damaging(0.99) TCGA-DK-AA71-01 15 64448848 64448848 G A SNX22 3'UTR 0.63 TCGA-DK-AA71-01 15 64658176 64658176 C T KIAA0101 3'UTR 0.67 TCGA-DK-AA71-01 15 65917953 65917953 C T SLC24A1 Missense_Mutation p.S512F 0.25 probably_damaging(0.951) TCGA-DK-AA71-01 15 74032253 74032253 G A C15orf59 3'UTR 0.17 TCGA-DK-AA71-01 15 74911640 74911640 C T CLK3 Nonsense_Mutation p.R183* 0.53 TCGA-DK-AA71-01 15 75498952 75498952 G T C15orf39 Missense_Mutation p.G188V 0.58 deleterious(0.02) benign(0.002) TCGA-DK-AA71-01 15 77324701 77324701 C T PSTPIP1 Silent p.F268F 0.55 TCGA-DK-AA71-01 15 77407407 77407407 C G PEAK1 Missense_Mutation p.Q1444H 0.54 tolerated(0.14) benign(0.009) TCGA-DK-AA71-01 15 78841248 78841248 G A PSMA4 Missense_Mutation p.E250K 0.65 tolerated(0.21) unknown(0) TCGA-DK-AA71-01 15 89449021 89449021 G C MFGE8 Missense_Mutation p.L218V 0.17 tolerated(0.08) possibly_damaging(0.462) TCGA-DK-AA71-01 15 90348604 90348604 G A ANPEP Silent p.I235I 0.46 TCGA-DK-AA71-01 15 91341440 91341440 G C BLM Silent p.V1077V 0.41 TCGA-DK-AA71-01 15 92706131 92706131 C G SLCO3A1 Silent p.L633L 0.54 TCGA-DK-AA71-01 15 99669977 99669977 C T SYNM Missense_Mutation p.S470L 0.34 deleterious(0) possibly_damaging(0.667) TCGA-DK-AA71-01 16 11370222 11370222 G A PRM2 Silent p.V2V 0.29 TCGA-DK-AA71-01 16 1267918 1267918 G A CACNA1H Splice_Site p.X1775_splice 0.50 TCGA-DK-AA71-01 16 14951432 14951432 G C NOMO1 Missense_Mutation p.Q380H 0.48 tolerated(0.2) benign(0.004) TCGA-DK-AA71-01 16 15026531 15026531 C T NPIPA1 5'Flank 0.31 TCGA-DK-AA71-01 16 15163946 15163946 C T RRN3 Silent p.L475L 0.16 TCGA-DK-AA71-01 16 16208825 16208825 C T ABCC1 Silent p.F1094F 0.26 TCGA-DK-AA71-01 16 1774591 1774591 G C MAPK8IP3 Missense_Mutation p.E118Q 0.28 deleterious(0.02) possibly_damaging(0.827) TCGA-DK-AA71-01 16 19452054 19452054 C G TMC5 Missense_Mutation p.Q232E 0.41 tolerated_low_confidence(0.1) benign(0.08) TCGA-DK-AA71-01 16 19562602 19562602 G A CCP110 3'UTR 0.51 TCGA-DK-AA71-01 16 22545886 22545886 G A NPIPB5 Missense_Mutation p.D528N 0.14 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-DK-AA71-01 16 28998180 28998180 C T LAT Silent p.L189L 0.61 TCGA-DK-AA71-01 16 29845300 29845300 C T MVP Nonsense_Mutation p.Q164* 0.52 TCGA-DK-AA71-01 16 29845311 29845311 C A MVP Silent p.I167I 0.50 TCGA-DK-AA71-01 16 30006426 30006426 G A HIRIP3 Missense_Mutation p.S100L 0.25 deleterious(0) probably_damaging(0.994) TCGA-DK-AA71-01 16 304506 304506 G A ITFG3 Missense_Mutation p.E32K 0.27 tolerated(0.35) benign(0.22) TCGA-DK-AA71-01 16 30594499 30594499 G A ZNF785 Silent p.F200F 0.38 TCGA-DK-AA71-01 16 3100402 3100402 C T MMP25 Silent p.I172I 0.55 TCGA-DK-AA71-01 16 3554728 3554728 G T CLUAP1 Nonsense_Mutation p.E11* 0.52 TCGA-DK-AA71-01 16 4390918 4390918 C T PAM16 Intron 0.46 TCGA-DK-AA71-01 16 5083377 5083377 C G NAGPA Missense_Mutation p.E147Q 0.67 benign(0.107) TCGA-DK-AA71-01 16 52473277 52473277 G A TOX3 Missense_Mutation p.R531W 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-AA71-01 16 53495720 53495720 C T RBL2 Nonsense_Mutation p.Q472* 0.21 TCGA-DK-AA71-01 16 57007392 57007392 C T CETP Silent p.L300L 0.55 TCGA-DK-AA71-01 16 57085522 57085522 G A NLRC5 Silent p.L1165L 0.57 TCGA-DK-AA71-01 16 57155090 57155090 G A CPNE2 Missense_Mutation p.R256Q 0.32 tolerated(0.83) benign(0.001) TCGA-DK-AA71-01 16 58573755 58573755 G A CNOT1 Nonsense_Mutation p.Q1637* 0.56 TCGA-DK-AA71-01 16 67316738 67316738 C T PLEKHG4 Nonsense_Mutation p.Q496* 0.57 TCGA-DK-AA71-01 16 67375868 67375868 G C LRRC36 Missense_Mutation p.E27Q 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-DK-AA71-01 16 67645045 67645045 G T CTCF Nonsense_Mutation p.E104* 0.42 TCGA-DK-AA71-01 16 67645168 67645168 G C CTCF Missense_Mutation p.E145Q 0.50 tolerated(0.42) benign(0.028) TCGA-DK-AA71-01 16 67645864 67645864 G C CTCF Missense_Mutation p.K264N 0.52 deleterious(0.02) possibly_damaging(0.771) TCGA-DK-AA71-01 16 67683403 67683403 C T RLTPR Silent p.V600V 0.52 TCGA-DK-AA71-01 16 67976268 67976268 G A LCAT Missense_Mutation p.S249L 0.50 deleterious(0) possibly_damaging(0.528) TCGA-DK-AA71-01 16 69481132 69481132 C T CYB5B Missense_Mutation p.S85F 0.20 tolerated(0.06) benign(0.02) TCGA-DK-AA71-01 16 70164432 70164432 C G PDPR Silent p.V238V 0.21 TCGA-DK-AA71-01 16 70292973 70292973 G C AARS Silent p.L634L 0.26 TCGA-DK-AA71-01 16 70504256 70504256 C T FUK Missense_Mutation p.S332L 0.16 tolerated(0.15) benign(0.075) TCGA-DK-AA71-01 16 70573104 70573104 G C SF3B3 Missense_Mutation p.G354A 0.55 deleterious(0.02) probably_damaging(0.96) TCGA-DK-AA71-01 16 72992753 72992753 G A ZFHX3 Missense_Mutation p.S431L 0.28 benign(0.208) TCGA-DK-AA71-01 16 75646349 75646349 G A ADAT1 Missense_Mutation p.H279Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 16 81050928 81050928 C G CENPN Intron 0.19 TCGA-DK-AA71-01 16 81094891 81094891 G C C16orf46 Missense_Mutation p.L355V 0.12 tolerated(0.13) benign(0.005) TCGA-DK-AA71-01 16 81095259 81095259 G C C16orf46 Missense_Mutation p.S232C 0.24 tolerated(0.16) benign(0.001) TCGA-DK-AA71-01 16 81164155 81164155 G A PKD1L2 RNA 0.44 TCGA-DK-AA71-01 16 83813674 83813674 G A CDH13 Missense_Mutation p.D642N 0.22 tolerated(0.15) probably_damaging(0.999) TCGA-DK-AA71-01 16 84066983 84066983 G A SLC38A8 Silent p.V160V 0.51 TCGA-DK-AA71-01 16 84872178 84872178 C G CRISPLD2 Missense_Mutation p.P26R 0.19 deleterious(0) benign(0.049) TCGA-DK-AA71-01 16 87782414 87782414 G A KLHDC4 Missense_Mutation p.A124V 0.32 tolerated(0.06) possibly_damaging(0.788) TCGA-DK-AA71-01 16 8862780 8862780 G A ABAT Missense_Mutation p.E256K 0.43 deleterious(0.01) benign(0.112) TCGA-DK-AA71-01 16 8862795 8862795 G C ABAT Missense_Mutation p.E261Q 0.43 deleterious(0.02) benign(0.075) TCGA-DK-AA71-01 16 89346322 89346322 C A ANKRD11 Nonsense_Mutation p.E2210* 0.64 TCGA-DK-AA71-01 16 89349019 89349019 G A ANKRD11 Nonsense_Mutation p.R1311* 0.32 TCGA-DK-AA71-01 16 89350123 89350123 C G ANKRD11 Missense_Mutation p.E943Q 0.58 probably_damaging(0.934) TCGA-DK-AA71-01 16 89350519 89350519 C G ANKRD11 Missense_Mutation p.D811H 0.38 probably_damaging(0.979) TCGA-DK-AA71-01 16 89350613 89350613 C T ANKRD11 Silent p.K779K 0.43 TCGA-DK-AA71-01 16 89351126 89351126 C G ANKRD11 Missense_Mutation p.K608N 0.51 benign(0.051) TCGA-DK-AA71-01 17 10541723 10541723 C G MYH3 Missense_Mutation p.E1122D 0.57 deleterious(0.02) probably_damaging(0.983) TCGA-DK-AA71-01 17 16285578 16285578 C A UBB Silent p.L119L 0.25 TCGA-DK-AA71-01 17 1635761 1635761 C T WDR81 Nonsense_Mutation p.Q1434* 0.57 TCGA-DK-AA71-01 17 16594041 16594041 G C CCDC144A Missense_Mutation p.K109N 0.49 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-DK-AA71-01 17 19645469 19645469 C T ALDH3A1 Silent p.E179E 0.59 TCGA-DK-AA71-01 17 19713749 19713749 C T ULK2 Missense_Mutation p.D367N 0.25 tolerated(0.07) benign(0.005) TCGA-DK-AA71-01 17 2239366 2239366 G A TSR1 Missense_Mutation p.R56C 0.35 deleterious(0) possibly_damaging(0.772) TCGA-DK-AA71-01 17 26732448 26732448 C A SLC46A1 Missense_Mutation p.M89I 0.67 tolerated(1) benign(0.011) TCGA-DK-AA71-01 17 26970179 26970179 C T KIAA0100 Intron 0.31 TCGA-DK-AA71-01 17 27278075 27278075 C T PHF12 5'UTR 0.38 TCGA-DK-AA71-01 17 28770898 28770898 G A CPD Missense_Mutation p.E818K 0.43 tolerated(0.08) benign(0.013) TCGA-DK-AA71-01 17 29280326 29280326 G A ADAP2 Silent p.R254R 0.43 TCGA-DK-AA71-01 17 29645536 29645536 G C EVI2A Missense_Mutation p.L189V 0.43 deleterious(0.05) benign(0.303) TCGA-DK-AA71-01 17 32964646 32964646 C T TMEM132E Missense_Mutation p.P784S 0.42 tolerated(0.08) possibly_damaging(0.459) TCGA-DK-AA71-01 17 34862378 34862378 G C MYO19 Missense_Mutation p.P572A 0.39 tolerated(0.13) benign(0.083) TCGA-DK-AA71-01 17 37576126 37576126 G C MED1 Missense_Mutation p.P381A 0.27 tolerated(0.07) probably_damaging(0.964) TCGA-DK-AA71-01 17 39723607 39723607 C A KRT9 Missense_Mutation p.G597V 0.36 unknown(0) TCGA-DK-AA71-01 17 41113344 41113344 C T PTGES3L-AARSD1 Missense_Mutation p.D240N 0.47 tolerated(0.28) benign(0.019) TCGA-DK-AA71-01 17 41622708 41622708 C A ETV4 Nonsense_Mutation p.E30* 0.39 TCGA-DK-AA71-01 17 42153426 42153426 C T G6PC3 3'UTR 0.38 TCGA-DK-AA71-01 17 42153437 42153437 C A G6PC3 3'UTR 0.38 TCGA-DK-AA71-01 17 43922915 43922915 C T SPPL2C Missense_Mutation p.R215W 0.13 deleterious(0.05) probably_damaging(0.976) TCGA-DK-AA71-01 17 44060605 44060605 G C MAPT Silent p.L145L 0.36 TCGA-DK-AA71-01 17 46024055 46024055 C G PNPO Silent p.V231V 0.44 TCGA-DK-AA71-01 17 47075134 47075134 C T IGF2BP1 Silent p.L9L 0.37 TCGA-DK-AA71-01 17 48545869 48545869 G C CHAD Missense_Mutation p.I102M 0.40 deleterious(0.01) possibly_damaging(0.828) TCGA-DK-AA71-01 17 48548477 48548477 G T ACSF2 Missense_Mutation p.R435I 0.45 deleterious(0.02) possibly_damaging(0.889) TCGA-DK-AA71-01 17 58282946 58282946 G A USP32 Silent p.F1037F 0.38 TCGA-DK-AA71-01 17 60525101 60525101 G A METTL2A Missense_Mutation p.G319E 0.43 deleterious(0) probably_damaging(0.991) TCGA-DK-AA71-01 17 60526027 60526027 G A METTL2A Silent p.L358L 0.35 TCGA-DK-AA71-01 17 60814261 60814261 G A MARCH10 Missense_Mutation p.S323L 0.39 tolerated(0.2) benign(0.016) TCGA-DK-AA71-01 17 61613111 61613111 G A KCNH6 Missense_Mutation p.E395K 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 17 61685197 61685197 G A TACO1 Silent p.R243R 0.37 TCGA-DK-AA71-01 17 7137543 7137543 C A DVL2 Missense_Mutation p.E13D 0.28 deleterious(0.05) probably_damaging(0.944) TCGA-DK-AA71-01 17 73870452 73870452 G C TRIM47 3'UTR 0.55 TCGA-DK-AA71-01 17 73870748 73870748 G A TRIM47 Missense_Mutation p.S578F 0.51 deleterious(0) possibly_damaging(0.819) TCGA-DK-AA71-01 17 73974953 73974953 G C ACOX1 Intron 0.48 TCGA-DK-AA71-01 17 74569327 74569327 C T ST6GALNAC2 Silent p.L160L 0.42 TCGA-DK-AA71-01 17 76046718 76046718 C A TNRC6C Missense_Mutation p.D525E 0.17 tolerated(0.55) benign(0.007) TCGA-DK-AA71-01 17 7840070 7840070 G A CNTROB Missense_Mutation p.E255K 0.56 tolerated(0.13) probably_damaging(0.997) TCGA-DK-AA71-01 17 7990795 7990795 C T ALOX12B 5'UTR 0.59 TCGA-DK-AA71-01 17 80439087 80439087 G A NARF Missense_Mutation p.G257S 0.35 tolerated(0.07) probably_damaging(0.913) TCGA-DK-AA71-01 17 80858593 80858593 C T TBCD Silent p.I572I 0.44 TCGA-DK-AA71-01 17 8409808 8409808 C T MYH10 Splice_Site p.X1072_splice 0.28 TCGA-DK-AA71-01 17 9546348 9546348 G C WDR16 Missense_Mutation p.D566H 0.38 deleterious(0.01) possibly_damaging(0.729) TCGA-DK-AA71-01 17 96924 96924 G C RPH3AL Missense_Mutation p.I197M 0.64 tolerated(0.05) benign(0.129) TCGA-DK-AA71-01 18 19996233 19996233 G A CTAGE1 Silent p.L514L 0.28 TCGA-DK-AA71-01 18 21512154 21512154 G A LAMA3 Silent p.L2869L 0.55 TCGA-DK-AA71-01 18 21534559 21534559 G A LAMA3 Missense_Mutation p.E3317K 0.24 benign(0.002) TCGA-DK-AA71-01 18 21534717 21534717 G A LAMA3 3'UTR 0.19 TCGA-DK-AA71-01 18 265362 265362 C T THOC1 Missense_Mutation p.E44K 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-DK-AA71-01 18 2931255 2931255 T - LPIN2 Frame_Shift_Del p.E486Kfs*20 0.26 TCGA-DK-AA71-01 18 34092499 34092499 C G FHOD3 Missense_Mutation p.I168M 0.17 deleterious(0) probably_damaging(0.985) TCGA-DK-AA71-01 18 40850183 40850183 C G SYT4 3'UTR 0.28 TCGA-DK-AA71-01 18 59854747 59854747 G A KIAA1468 Silent p.A3A 0.51 TCGA-DK-AA71-01 18 61264390 61264390 C T SERPINB13 Silent p.S323S 0.30 TCGA-DK-AA71-01 18 65179250 65179250 C T DSEL Missense_Mutation p.E876K 0.53 deleterious(0) possibly_damaging(0.841) TCGA-DK-AA71-01 18 743319 743319 C T YES1 Missense_Mutation p.R274Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 18 76752153 76752153 G C SALL3 Missense_Mutation p.E54D 0.50 tolerated(0.3) unknown(0) TCGA-DK-AA71-01 18 77472971 77472971 G C CTDP1 Splice_Site p.X288_splice 0.59 TCGA-DK-AA71-01 18 7888248 7888248 T C PTPRM Missense_Mutation p.L114P 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 18 7888249 7888249 C T PTPRM Silent p.L114L 0.25 TCGA-DK-AA71-01 18 7888305 7888305 C G PTPRM Missense_Mutation p.S133C 0.22 deleterious(0) probably_damaging(0.998) TCGA-DK-AA71-01 18 8376056 8376056 G A PTPRM Missense_Mutation p.E1062K 0.24 deleterious(0.05) possibly_damaging(0.702) TCGA-DK-AA71-01 19 10129478 10129478 G C RDH8 Missense_Mutation p.D132H 0.59 deleterious(0) probably_damaging(0.935) TCGA-DK-AA71-01 19 10916622 10916622 G A DNM2 Silent p.K508K 0.38 TCGA-DK-AA71-01 19 13223524 13223524 C T TRMT1 Missense_Mutation p.E289K 0.25 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 19 15052573 15052573 G C OR7C2 Missense_Mutation p.M91I 0.54 tolerated_low_confidence(0.18) benign(0) TCGA-DK-AA71-01 19 15349778 15349778 C T BRD4 Missense_Mutation p.E1266K 0.67 benign(0.012) TCGA-DK-AA71-01 19 15350232 15350232 C T BRD4 Missense_Mutation p.E1183K 0.56 benign(0.292) TCGA-DK-AA71-01 19 17351553 17351553 G A NR2F6 Silent p.I100I 0.32 TCGA-DK-AA71-01 19 17950473 17950473 C T JAK3 Splice_Site p.X419_splice 0.62 TCGA-DK-AA71-01 19 17992812 17992812 G A SLC5A5 Missense_Mutation p.E368K 0.45 deleterious(0) probably_damaging(0.976) TCGA-DK-AA71-01 19 17992815 17992815 G A SLC5A5 Missense_Mutation p.D369N 0.45 deleterious(0) probably_damaging(0.99) TCGA-DK-AA71-01 19 17992862 17992862 G C SLC5A5 Silent p.V384V 0.45 TCGA-DK-AA71-01 19 18309555 18309555 C T RAB3A Missense_Mutation p.R151Q 0.41 tolerated(0.8) benign(0.002) TCGA-DK-AA71-01 19 18468199 18468199 G C PGPEP1 Missense_Mutation p.V71L 0.48 deleterious(0.02) possibly_damaging(0.669) TCGA-DK-AA71-01 19 1986587 1986587 G A BTBD2 Missense_Mutation p.T493M 0.37 deleterious(0.04) possibly_damaging(0.782) TCGA-DK-AA71-01 19 2110747 2110747 G A AP3D1 Missense_Mutation p.S1045F 0.38 deleterious(0.01) benign(0.044) TCGA-DK-AA71-01 19 21992344 21992344 C A ZNF43 Missense_Mutation p.K165N 0.39 tolerated(0.11) possibly_damaging(0.737) TCGA-DK-AA71-01 19 22256299 22256299 C T ZNF257 Silent p.I53I 0.24 TCGA-DK-AA71-01 19 2794815 2794815 C T THOP1 Missense_Mutation p.R95W 0.52 deleterious(0.01) probably_damaging(1) TCGA-DK-AA71-01 19 35176444 35176444 G C ZNF302 3'UTR 0.33 TCGA-DK-AA71-01 19 36258847 36258847 C T C19orf55 Missense_Mutation p.S367L 0.53 tolerated(0.13) benign(0.024) TCGA-DK-AA71-01 19 37367703 37367703 G C ZNF345 5'UTR 0.26 TCGA-DK-AA71-01 19 37660738 37660738 C T ZNF585A Intron 0.82 TCGA-DK-AA71-01 19 38126661 38126661 G A ZFP30 Nonsense_Mutation p.Q261* 0.70 TCGA-DK-AA71-01 19 38189297 38189297 G C ZNF607 Missense_Mutation p.H579D 0.62 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 19 38655227 38655227 G C SIPA1L3 Missense_Mutation p.E1297Q 0.73 deleterious(0.01) possibly_damaging(0.864) TCGA-DK-AA71-01 19 39591412 39591412 C T PAPL Silent p.F242F 0.74 TCGA-DK-AA71-01 19 40360985 40360985 G C FCGBP Silent p.L5141L 0.16 TCGA-DK-AA71-01 19 40433551 40433551 C T FCGBP Missense_Mutation p.E240K 0.33 possibly_damaging(0.714) TCGA-DK-AA71-01 19 40828047 40828047 C A C19orf47 Silent p.R337R 0.22 TCGA-DK-AA71-01 19 41003504 41003504 T A SPTBN4 Missense_Mutation p.D259E 0.58 deleterious(0) benign(0) TCGA-DK-AA71-01 19 41809958 41809958 G A HNRNPUL1 Missense_Mutation p.R685K 0.29 deleterious(0.01) unknown(0) TCGA-DK-AA71-01 19 42270109 42270109 C G CEACAM6 Nonsense_Mutation p.S326* 0.17 TCGA-DK-AA71-01 19 43683307 43683307 C T PSG5 Intron 0.17 TCGA-DK-AA71-01 19 44983591 44983591 G T ZNF180 Missense_Mutation p.F81L 0.62 tolerated(0.09) benign(0.021) TCGA-DK-AA71-01 19 45389471 45389471 G C PVRL2 Missense_Mutation p.E448Q 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.674) TCGA-DK-AA71-01 19 45682597 45682597 G C BLOC1S3 Missense_Mutation p.E15Q 0.26 tolerated(0.68) possibly_damaging(0.607) TCGA-DK-AA71-01 19 46002175 46002175 G A PPM1N Missense_Mutation p.E149K 0.56 tolerated(0.19) benign(0.002) TCGA-DK-AA71-01 19 46192585 46192585 C G SNRPD2 Intron 0.38 TCGA-DK-AA71-01 19 46271455 46271455 G C SIX5 Silent p.L216L 0.24 TCGA-DK-AA71-01 19 46271479 46271479 G A SIX5 Silent p.F208F 0.19 TCGA-DK-AA71-01 19 48282019 48282019 C A SEPW1 5'UTR 0.36 TCGA-DK-AA71-01 19 49934597 49934597 G C SLC17A7 Missense_Mutation p.S420C 0.20 deleterious(0) probably_damaging(0.996) TCGA-DK-AA71-01 19 50394679 50394679 C T IL4I1 Missense_Mutation p.E229K 0.19 deleterious(0) possibly_damaging(0.61) TCGA-DK-AA71-01 19 50774701 50774701 G A MYH14 Silent p.A1023A 0.53 TCGA-DK-AA71-01 19 50862274 50862274 G A NAPSA Silent p.V343V 0.72 TCGA-DK-AA71-01 19 51742942 51742942 G A CD33 Silent p.%3D 0.58 TCGA-DK-AA71-01 19 53269908 53269908 G A ZNF600 Silent p.F367F 0.55 TCGA-DK-AA71-01 19 53270123 53270123 G A ZNF600 Missense_Mutation p.H296Y 0.60 deleterious(0.01) probably_damaging(0.99) TCGA-DK-AA71-01 19 53270156 53270156 G A ZNF600 Nonsense_Mutation p.Q285* 0.65 TCGA-DK-AA71-01 19 53432503 53432503 C T ZNF321P Missense_Mutation p.E119K 0.22 tolerated(0.12) benign(0.22) TCGA-DK-AA71-01 19 53669199 53669199 C T ZNF665 Missense_Mutation p.E182K 0.42 tolerated(0.24) benign(0.023) TCGA-DK-AA71-01 19 55143021 55143021 C A LILRB1 Silent p.L47L 0.56 TCGA-DK-AA71-01 19 5711913 5711913 C T LONP1 Missense_Mutation p.E247K 0.20 tolerated(0.32) benign(0.014) TCGA-DK-AA71-01 19 58115708 58115708 G A ZNF530 Missense_Mutation p.D32N 0.62 deleterious(0) probably_damaging(0.993) TCGA-DK-AA71-01 19 6141583 6141583 G C ACSBG2 Missense_Mutation p.G10A 0.48 tolerated_low_confidence(0.38) benign(0.007) TCGA-DK-AA71-01 19 622696 622696 C T POLRMT Silent p.L504L 0.25 TCGA-DK-AA71-01 19 6586263 6586263 G A CD70 Missense_Mutation p.S117F 0.18 tolerated(0.17) benign(0.001) TCGA-DK-AA71-01 19 758421 758421 C T MISP Missense_Mutation p.P492L 0.23 tolerated(0.15) benign(0.002) TCGA-DK-AA71-01 19 8651264 8651264 C T ADAMTS10 Missense_Mutation p.A832T 0.67 tolerated(0.71) benign(0.008) TCGA-DK-AA71-01 19 9049697 9049697 G A MUC16 Missense_Mutation p.S10645L 0.50 benign(0.048) TCGA-DK-AA71-01 19 9868477 9868477 C G ZNF846 Missense_Mutation p.E426Q 0.55 tolerated(0.29) benign(0.019) TCGA-DK-AA71-01 19 9959883 9959883 G A PIN1 3'UTR 0.50 TCGA-DK-AA71-01 1 110217465 110217465 G C GSTM2 3'UTR 0.35 TCGA-DK-AA71-01 1 110255781 110255781 C T GSTM5 Silent p.F51F 0.17 TCGA-DK-AA71-01 1 110993871 110993871 C T PROK1 Silent p.L11L 0.38 TCGA-DK-AA71-01 1 112321061 112321061 G C KCND3 Missense_Mutation p.I505M 0.39 tolerated_low_confidence(0.14) benign(0.016) TCGA-DK-AA71-01 1 11333539 11333539 C T UBIAD1 5'UTR 0.30 TCGA-DK-AA71-01 1 114225878 114225878 C T MAGI3 Nonsense_Mutation p.Q1230* 0.31 TCGA-DK-AA71-01 1 115130050 115130050 C T DENND2C Missense_Mutation p.E905K 0.45 deleterious(0.02) possibly_damaging(0.881) TCGA-DK-AA71-01 1 115466092 115466092 G A SYCP1 Missense_Mutation p.E581K 0.80 tolerated(0.37) benign(0.015) TCGA-DK-AA71-01 1 117564398 117564398 G A CD101 Missense_Mutation p.E741K 0.42 tolerated(0.06) benign(0.142) TCGA-DK-AA71-01 1 11852391 11852391 G A MTHFR Silent p.L526L 0.36 TCGA-DK-AA71-01 1 12726459 12726459 C T AADACL4 Silent p.L313L 0.29 TCGA-DK-AA71-01 1 13036645 13036645 C T PRAMEF22 Silent p.L239L 0.32 TCGA-DK-AA71-01 1 145578321 145578321 C T PIAS3 Missense_Mutation p.P95L 0.37 tolerated(0.14) benign(0.146) TCGA-DK-AA71-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.04 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-DK-AA71-01 1 150337364 150337364 C T RPRD2 Silent p.I58I 0.51 TCGA-DK-AA71-01 1 150390095 150390095 C G RPRD2 Missense_Mutation p.L77V 0.45 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-DK-AA71-01 1 150485787 150485787 G C ECM1 Silent p.L516L 0.43 TCGA-DK-AA71-01 1 151239818 151239818 G T PSMD4 Nonstop_Mutation p.*378Lext*11 0.41 TCGA-DK-AA71-01 1 152284089 152284089 C T FLG Silent p.Q1091Q 0.39 TCGA-DK-AA71-01 1 152284295 152284295 C T FLG Missense_Mutation p.E1023K 0.45 probably_damaging(0.93) TCGA-DK-AA71-01 1 155161870 155161870 G T MUC1 Nonsense_Mutation p.S88* 0.51 TCGA-DK-AA71-01 1 155920760 155920760 C G ARHGEF2 Missense_Mutation p.E855Q 0.52 tolerated(0.19) probably_damaging(0.99) TCGA-DK-AA71-01 1 156703970 156703970 G C RRNAD1 Missense_Mutation p.R269T 0.20 deleterious(0.01) possibly_damaging(0.635) TCGA-DK-AA71-01 1 156908267 156908267 C G ARHGEF11 Missense_Mutation p.E1379Q 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.642) TCGA-DK-AA71-01 1 15809793 15809793 G A CELA2B Missense_Mutation p.V131I 0.33 tolerated(0.09) benign(0.293) TCGA-DK-AA71-01 1 160128840 160128840 G A ATP1A4 Missense_Mutation p.E192K 0.42 tolerated(0.12) benign(0.065) TCGA-DK-AA71-01 1 16064426 16064426 C G SLC25A34 Missense_Mutation p.I127M 0.63 deleterious(0) benign(0.36) TCGA-DK-AA71-01 1 161130233 161130233 T C USP21 5'UTR 0.50 TCGA-DK-AA71-01 1 161163802 161163802 C T ADAMTS4 Missense_Mutation p.D491N 0.47 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 1 161696749 161696749 G A FCRLB Silent p.R277R 0.13 TCGA-DK-AA71-01 1 16382932 16382932 G C CLCNKB Missense_Mutation p.E649Q 0.29 tolerated(0.21) benign(0.047) TCGA-DK-AA71-01 1 167097698 167097698 G T DUSP27 Silent p.G1110G 0.26 TCGA-DK-AA71-01 1 168683488 168683488 G C DPT Silent p.R134R 0.40 TCGA-DK-AA71-01 1 172558426 172558426 C G SUCO Missense_Mutation p.L729V 0.40 tolerated(0.77) benign(0.001) TCGA-DK-AA71-01 1 173881128 173881128 C T SERPINC1 Missense_Mutation p.E145K 0.41 deleterious(0.03) probably_damaging(0.965) TCGA-DK-AA71-01 1 17603328 17603328 G A PADI3 Silent p.Q504Q 0.14 TCGA-DK-AA71-01 1 180135623 180135623 C T QSOX1 Intron 0.39 TCGA-DK-AA71-01 1 182025730 182025730 G A ZNF648 Silent p.G472G 0.12 TCGA-DK-AA71-01 1 182555314 182555314 G A RNASEL Missense_Mutation p.L210F 0.46 tolerated(0.19) benign(0.022) TCGA-DK-AA71-01 1 182823291 182823291 C G DHX9 Missense_Mutation p.Q202E 0.49 tolerated(1) benign(0.004) TCGA-DK-AA71-01 1 184787855 184787855 C T FAM129A Missense_Mutation p.E364K 0.48 deleterious(0) probably_damaging(0.972) TCGA-DK-AA71-01 1 185056770 185056770 C T RNF2 Nonsense_Mutation p.Q29* 0.40 TCGA-DK-AA71-01 1 185270299 185270299 C T IVNS1ABP Missense_Mutation p.D309N 0.18 tolerated(1) benign(0.005) TCGA-DK-AA71-01 1 186296753 186296753 C A TPR Nonsense_Mutation p.E1910* 0.36 TCGA-DK-AA71-01 1 19473459 19473459 G A UBR4 Silent p.L2555L 0.53 TCGA-DK-AA71-01 1 200633163 200633163 G A DDX59 Nonsense_Mutation p.Q286* 0.32 TCGA-DK-AA71-01 1 200633201 200633201 G A DDX59 Missense_Mutation p.S273F 0.43 tolerated(0.71) possibly_damaging(0.515) TCGA-DK-AA71-01 1 200878490 200878490 G C C1orf106 Missense_Mutation p.E308D 0.43 tolerated(0.12) benign(0.115) TCGA-DK-AA71-01 1 201437481 201437481 C G PHLDA3 3'UTR 0.41 TCGA-DK-AA71-01 1 202531962 202531962 C T PPP1R12B Missense_Mutation p.S855L 0.23 tolerated(0.32) possibly_damaging(0.908) TCGA-DK-AA71-01 1 202842667 202842667 G C RP11-480I12.7 RNA 0.31 TCGA-DK-AA71-01 1 207297264 207297264 C T C4BPA Intron 0.31 TCGA-DK-AA71-01 1 209796434 209796434 G A LAMB3 Missense_Mutation p.R817C 0.48 tolerated(0.07) benign(0.276) TCGA-DK-AA71-01 1 21175999 21175999 G C EIF4G3 Nonsense_Mutation p.S1216* 0.19 TCGA-DK-AA71-01 1 214813278 214813278 C T CENPF Nonsense_Mutation p.Q533* 0.40 TCGA-DK-AA71-01 1 215822036 215822036 C T USH2A Missense_Mutation p.E4806K 0.44 probably_damaging(0.945) TCGA-DK-AA71-01 1 216348756 216348756 G A USH2A Missense_Mutation p.P1489S 0.33 benign(0.14) TCGA-DK-AA71-01 1 220156627 220156627 G C EPRS Missense_Mutation p.I1068M 0.41 deleterious(0) probably_damaging(0.992) TCGA-DK-AA71-01 1 220310180 220310180 G A IARS2 Missense_Mutation p.G659E 0.33 tolerated(0.11) possibly_damaging(0.752) TCGA-DK-AA71-01 1 22048160 22048160 C T USP48 Silent p.L582L 0.44 TCGA-DK-AA71-01 1 22048228 22048228 C G USP48 Missense_Mutation p.E560Q 0.45 tolerated(0.68) benign(0.009) TCGA-DK-AA71-01 1 223396972 223396972 C A SUSD4 Missense_Mutation p.G355W 0.47 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 1 225609849 225609849 G A LBR Missense_Mutation p.S99F 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA71-01 1 226923512 226923512 G C ITPKB Missense_Mutation p.Q550E 0.26 tolerated_low_confidence(1) benign(0.005) TCGA-DK-AA71-01 1 2288914 2288914 C G MORN1 Missense_Mutation p.L331F 0.38 tolerated(0.7) benign(0.128) TCGA-DK-AA71-01 1 233802576 233802576 C T KCNK1 Silent p.F197F 0.51 TCGA-DK-AA71-01 1 2341873 2341873 C G PEX10 Missense_Mutation p.E44Q 0.36 tolerated(0.14) benign(0.053) TCGA-DK-AA71-01 1 237837471 237837471 C T RYR2 Missense_Mutation p.A2889V 0.17 probably_damaging(0.999) TCGA-DK-AA71-01 1 237872193 237872193 C T RYR2 Nonsense_Mutation p.Q3313* 0.19 TCGA-DK-AA71-01 1 240370363 240370363 G A FMN2 Missense_Mutation p.E751K 0.45 unknown(0) TCGA-DK-AA71-01 1 24120416 24120416 G C LYPLA2 Missense_Mutation p.E97D 0.24 tolerated(0.12) benign(0.008) TCGA-DK-AA71-01 1 2420750 2420750 C T PLCH2 Missense_Mutation p.S420L 0.30 deleterious(0.02) benign(0.149) TCGA-DK-AA71-01 1 245850930 245850930 G C KIF26B Missense_Mutation p.E1549Q 0.36 tolerated(0.53) unknown(0) TCGA-DK-AA71-01 1 247464540 247464540 C T ZNF496 Missense_Mutation p.E349K 0.41 tolerated(0.11) benign(0.07) TCGA-DK-AA71-01 1 248084415 248084415 C T OR2T8 Silent p.I32I 0.45 TCGA-DK-AA71-01 1 27094308 27094308 G A ARID1A Missense_Mutation p.E1006K 0.15 unknown(0) TCGA-DK-AA71-01 1 27094313 27094313 G A ARID1A Silent p.K1007K 0.16 TCGA-DK-AA71-01 1 27097665 27097665 C A ARID1A Nonsense_Mutation p.S1085* 0.21 TCGA-DK-AA71-01 1 27686828 27686828 G C MAP3K6 Missense_Mutation p.L696V 0.19 deleterious(0.02) possibly_damaging(0.591) TCGA-DK-AA71-01 1 28212398 28212398 G A THEMIS2 Missense_Mutation p.E633K 0.31 deleterious(0) probably_damaging(0.998) TCGA-DK-AA71-01 1 28282220 28282220 C T SMPDL3B Missense_Mutation p.P239L 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-DK-AA71-01 1 28835352 28835352 G A SNORA73B 3'Flank 0.19 TCGA-DK-AA71-01 1 29435879 29435879 G C EPB41 Missense_Mutation p.G782A 0.50 deleterious(0.02) probably_damaging(0.927) TCGA-DK-AA71-01 1 34015931 34015931 C T CSMD2 Silent p.P2777P 0.29 TCGA-DK-AA71-01 1 34083158 34083158 C G CSMD2 Missense_Mutation p.E1923Q 0.19 deleterious(0.02) possibly_damaging(0.877) TCGA-DK-AA71-01 1 36360780 36360780 C T AGO1 Silent p.F310F 0.56 TCGA-DK-AA71-01 1 37941228 37941228 C T ZC3H12A Missense_Mutation p.S44L 0.35 tolerated(0.16) benign(0.001) TCGA-DK-AA71-01 1 39776541 39776541 G A MACF1 Missense_Mutation p.E1052K 0.54 probably_damaging(0.939) TCGA-DK-AA71-01 1 39801354 39801354 G A MACF1 Intron 0.30 TCGA-DK-AA71-01 1 40228835 40228835 A C BMP8B Missense_Mutation p.C330G 0.18 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 1 43803856 43803856 G C MPL Missense_Mutation p.E56Q 0.24 deleterious(0.02) benign(0.125) TCGA-DK-AA71-01 1 44395890 44395890 C A ST3GAL3 Silent p.I444I 0.32 TCGA-DK-AA71-01 1 46527674 46527674 G C PIK3R3 Missense_Mutation p.H231D 0.32 deleterious(0) benign(0.138) TCGA-DK-AA71-01 1 47348848 47348848 C G CYP4Z2P RNA 0.27 TCGA-DK-AA71-01 1 53746277 53746277 C T LRP8 Missense_Mutation p.E160K 0.24 deleterious(0) possibly_damaging(0.877) TCGA-DK-AA71-01 1 59042095 59042095 C T TACSTD2 Missense_Mutation p.R245H 0.21 deleterious(0.02) benign(0.28) TCGA-DK-AA71-01 1 59134703 59134703 C T MYSM1 Missense_Mutation p.D557N 0.40 deleterious(0.05) possibly_damaging(0.841) TCGA-DK-AA71-01 1 66081710 66081710 C G LEPR Nonsense_Mutation p.S672* 0.31 TCGA-DK-AA71-01 1 67099825 67099825 C A SGIP1 Intron 0.24 TCGA-DK-AA71-01 1 68910473 68910473 C G RPE65 Missense_Mutation p.K113N 0.20 deleterious(0) possibly_damaging(0.872) TCGA-DK-AA71-01 1 7798328 7798328 C G CAMTA1 Missense_Mutation p.S1323C 0.71 tolerated_low_confidence(0.17) possibly_damaging(0.471) TCGA-DK-AA71-01 1 78045290 78045290 G T ZZZ3 Silent p.I668I 0.27 TCGA-DK-AA71-01 1 79357216 79357216 G T ELTD1 Missense_Mutation p.S668Y 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA71-01 1 92470738 92470738 G A BRDT Missense_Mutation p.G886E 0.62 tolerated(1) benign(0.014) TCGA-DK-AA71-01 1 93575839 93575839 C T MTF2 Nonsense_Mutation p.R20* 0.18 TCGA-DK-AA71-01 1 9791234 9791234 C G CLSTN1 Intron 0.18 TCGA-DK-AA71-01 20 1108111 1108111 G A PSMF1 Missense_Mutation p.D109N 0.36 tolerated(0.61) benign(0.001) TCGA-DK-AA71-01 20 16485048 16485048 C T KIF16B Missense_Mutation p.R382K 0.40 tolerated(0.19) probably_damaging(0.997) TCGA-DK-AA71-01 20 16486686 16486686 C T KIF16B Silent p.G283G 0.42 TCGA-DK-AA71-01 20 20269457 20269457 G C C20orf26 Missense_Mutation p.E1001Q 0.40 deleterious(0.03) probably_damaging(0.957) TCGA-DK-AA71-01 20 25597178 25597178 C G NANP Missense_Mutation p.E44Q 0.39 tolerated(0.34) benign(0.313) TCGA-DK-AA71-01 20 307448 307448 G A SOX12 Missense_Mutation p.E294K 0.46 deleterious(0) unknown(0) TCGA-DK-AA71-01 20 31671445 31671445 C T BPIFB4 Missense_Mutation p.H148Y 0.39 deleterious_low_confidence(0.03) benign(0.001) TCGA-DK-AA71-01 20 33871998 33871998 G A EIF6 Silent p.I58I 0.38 TCGA-DK-AA71-01 20 35506446 35506446 G C TLDC2 Missense_Mutation p.E60Q 0.36 tolerated(0.62) benign(0.139) TCGA-DK-AA71-01 20 36789841 36789841 G A TGM2 Silent p.L57L 0.72 TCGA-DK-AA71-01 20 39991292 39991292 C T EMILIN3 Missense_Mutation p.R306Q 0.35 tolerated(0.75) benign(0) TCGA-DK-AA71-01 20 42680115 42680115 C T TOX2 Missense_Mutation p.P194L 0.59 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 20 44580906 44580906 G A ZNF335 Silent p.I1023I 0.44 TCGA-DK-AA71-01 20 45644831 45644831 G A EYA2 Missense_Mutation p.E104K 0.48 deleterious(0) probably_damaging(0.998) TCGA-DK-AA71-01 20 50273588 50273588 G C ATP9A Silent p.L465L 0.41 TCGA-DK-AA71-01 20 57769086 57769086 C G ZNF831 Missense_Mutation p.I1004M 0.35 tolerated(0.24) benign(0.092) TCGA-DK-AA71-01 20 57769202 57769202 C T ZNF831 Missense_Mutation p.S1043L 0.69 tolerated(0.3) benign(0.003) TCGA-DK-AA71-01 20 62198677 62198677 G A HELZ2 Silent p.L678L 0.36 TCGA-DK-AA71-01 21 10973734 10973734 A T TPTE 5'UTR 0.11 TCGA-DK-AA71-01 21 15872926 15872926 T C SAMSN1 Missense_Mutation p.K299R 0.32 tolerated(0.26) benign(0.248) TCGA-DK-AA71-01 21 18933781 18933781 C T CXADR Missense_Mutation p.H274Y 0.45 tolerated(1) benign(0.397) TCGA-DK-AA71-01 21 30380857 30380857 A C RWDD2B Silent p.P51P 0.34 TCGA-DK-AA71-01 21 32253827 32253827 G C KRTAP11-1 Missense_Mutation p.S6C 0.24 tolerated(0.41) probably_damaging(0.973) TCGA-DK-AA71-01 21 33371551 33371551 C G HUNK 3'UTR 0.50 TCGA-DK-AA71-01 21 35445949 35445949 C T MRPS6 5'UTR 0.44 TCGA-DK-AA71-01 21 40670378 40670378 G C BRWD1 Missense_Mutation p.S110C 0.23 deleterious(0) probably_damaging(0.987) TCGA-DK-AA71-01 21 44845309 44845309 G A SIK1 Missense_Mutation p.P84L 0.25 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 21 45496468 45496468 G T TRAPPC10 Nonsense_Mutation p.E446* 0.22 TCGA-DK-AA71-01 22 17976489 17976489 C T CECR2 Silent p.L51L 0.22 TCGA-DK-AA71-01 22 18220834 18220834 C T BID Silent p.V221V 0.48 TCGA-DK-AA71-01 22 18220888 18220888 C G BID Missense_Mutation p.K203N 0.55 deleterious(0) probably_damaging(0.998) TCGA-DK-AA71-01 22 18220990 18220990 C T BID Silent p.R169R 0.45 TCGA-DK-AA71-01 22 19349330 19349330 C G HIRA Missense_Mutation p.E634Q 0.27 tolerated(0.27) benign(0.265) TCGA-DK-AA71-01 22 21344683 21344683 G A LZTR1 Silent p.Q220Q 0.28 TCGA-DK-AA71-01 22 21344765 21344765 G A LZTR1 Missense_Mutation p.G248R 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 22 22786696 22786696 C T IGLV1-36 Silent p.F82F 0.27 TCGA-DK-AA71-01 22 23406133 23406133 G A RTDR1 Silent p.L200L 0.41 TCGA-DK-AA71-01 22 32756543 32756543 C G RFPL3 Silent p.L226L 0.45 TCGA-DK-AA71-01 22 32871363 32871363 C G FBXO7 Intron 0.25 TCGA-DK-AA71-01 22 36003350 36003350 C T MB Silent p.Q153Q 0.08 TCGA-DK-AA71-01 22 39083955 39083955 C T JOSD1 Silent p.V187V 0.22 TCGA-DK-AA71-01 22 41347432 41347432 G C RBX1 Silent p.P10P 0.08 TCGA-DK-AA71-01 22 41537060 41537060 C G EP300 Nonsense_Mutation p.Y629* 0.22 TCGA-DK-AA71-01 22 41574279 41574279 G A EP300 Missense_Mutation p.M2188I 0.21 benign(0.017) TCGA-DK-AA71-01 22 41574314 41574314 G C EP300 Missense_Mutation p.G2200A 0.28 benign(0.005) TCGA-DK-AA71-01 22 42609732 42609732 G A TCF20 Missense_Mutation p.S527L 0.27 probably_damaging(0.997) TCGA-DK-AA71-01 22 42611299 42611299 G A TCF20 Missense_Mutation p.R5W 0.65 probably_damaging(0.999) TCGA-DK-AA71-01 22 44112771 44112771 C T EFCAB6 Missense_Mutation p.R280K 0.25 tolerated(1) benign(0) TCGA-DK-AA71-01 22 46930610 46930610 C G CELSR1 Missense_Mutation p.E820Q 0.31 tolerated(0.07) probably_damaging(1) TCGA-DK-AA71-01 22 46930774 46930774 G A CELSR1 Missense_Mutation p.S765F 0.22 deleterious(0) probably_damaging(0.992) TCGA-DK-AA71-01 22 46931028 46931028 C G CELSR1 Silent p.V680V 0.22 TCGA-DK-AA71-01 22 50302963 50302963 G A ALG12 Missense_Mutation p.R233W 0.05 probably_damaging(0.953) TCGA-DK-AA71-01 22 51160557 51160557 G A SHANK3 Silent p.P1448P 0.40 TCGA-DK-AA71-01 2 101606734 101606734 G C NPAS2 Missense_Mutation p.R615T 0.24 deleterious(0.03) benign(0.075) TCGA-DK-AA71-01 2 103013249 103013249 C T IL18R1 Missense_Mutation p.S510L 0.53 deleterious(0.04) possibly_damaging(0.712) TCGA-DK-AA71-01 2 10350434 10350434 C T C2orf48 Intron 0.25 TCGA-DK-AA71-01 2 108921648 108921648 G A SULT1C2 Missense_Mutation p.D186N 0.27 tolerated(0.15) possibly_damaging(0.888) TCGA-DK-AA71-01 2 11053024 11053024 G A KCNF1 Missense_Mutation p.E158K 0.28 tolerated(0.6) benign(0.036) TCGA-DK-AA71-01 2 11341183 11341183 G C ROCK2 Missense_Mutation p.S937C 0.61 tolerated(0.14) possibly_damaging(0.894) TCGA-DK-AA71-01 2 122205857 122205857 G C CLASP1 Missense_Mutation p.S579C 0.18 deleterious(0.01) possibly_damaging(0.687) TCGA-DK-AA71-01 2 128046305 128046305 G C ERCC3 Missense_Mutation p.Q320E 0.23 deleterious(0) probably_damaging(0.993) TCGA-DK-AA71-01 2 128377823 128377823 C T MYO7B Intron 0.28 TCGA-DK-AA71-01 2 131520440 131520440 G C AMER3 Silent p.L265L 0.67 TCGA-DK-AA71-01 2 1418254 1418254 G C TPO Missense_Mutation p.R25T 0.13 tolerated(0.2) benign(0.01) TCGA-DK-AA71-01 2 152342373 152342373 G C NEB Missense_Mutation p.I8493M 0.55 probably_damaging(0.937) TCGA-DK-AA71-01 2 160181452 160181452 C T BAZ2B Missense_Mutation p.E2075K 0.54 probably_damaging(0.943) TCGA-DK-AA71-01 2 171700635 171700635 C T GAD1 Missense_Mutation p.S240L 0.16 tolerated(0.11) benign(0.082) TCGA-DK-AA71-01 2 172821902 172821902 G C HAT1 Missense_Mutation p.G118A 0.16 deleterious(0.02) benign(0.248) TCGA-DK-AA71-01 2 178080849 178080849 G C HNRNPA3 Missense_Mutation p.Q162H 0.45 deleterious(0.03) probably_damaging(0.997) TCGA-DK-AA71-01 2 178081416 178081416 G A HNRNPA3 Missense_Mutation p.G219E 0.57 deleterious(0.02) benign(0.001) TCGA-DK-AA71-01 2 178082526 178082526 G C HNRNPA3 Missense_Mutation p.G305A 0.19 tolerated(0.07) unknown(0) TCGA-DK-AA71-01 2 178082552 178082552 G A HNRNPA3 Missense_Mutation p.E314K 0.23 tolerated(0.72) unknown(0) TCGA-DK-AA71-01 2 179397638 179397638 C T TTN Missense_Mutation p.M34568I 0.54 TCGA-DK-AA71-01 2 187698750 187698750 C A ZSWIM2 Nonsense_Mutation p.E251* 0.62 TCGA-DK-AA71-01 2 189931136 189931136 G A COL5A2 Missense_Mutation p.P515S 0.53 possibly_damaging(0.665) TCGA-DK-AA71-01 2 192225356 192225356 G A MYO1B Splice_Site p.X188_splice 0.50 TCGA-DK-AA71-01 2 198641782 198641782 C - BOLL Splice_Site p.X104_splice 0.30 TCGA-DK-AA71-01 2 198949827 198949827 C T PLCL1 Missense_Mutation p.S529L 0.19 deleterious(0) probably_damaging(0.996) TCGA-DK-AA71-01 2 198953595 198953595 C T PLCL1 Missense_Mutation p.S910F 0.23 tolerated(0.11) benign(0.364) TCGA-DK-AA71-01 2 201533504 201533504 C G AOX1 Nonsense_Mutation p.S1259* 0.25 TCGA-DK-AA71-01 2 202700453 202700453 G A CDK15 Missense_Mutation p.G273E 0.37 deleterious(0.01) probably_damaging(1) TCGA-DK-AA71-01 2 204260431 204260431 G A ABI2 Missense_Mutation p.E254K 0.23 deleterious(0.05) possibly_damaging(0.867) TCGA-DK-AA71-01 2 211465417 211465417 C T CPS1 Missense_Mutation p.P569L 0.26 tolerated(0.09) possibly_damaging(0.804) TCGA-DK-AA71-01 2 211481153 211481153 G A CPS1 Missense_Mutation p.D865N 0.22 tolerated(0.3) benign(0.002) TCGA-DK-AA71-01 2 219339480 219339480 C G USP37 Silent p.L724L 0.27 TCGA-DK-AA71-01 2 220083371 220083371 C A ABCB6 Nonsense_Mutation p.E9* 0.47 TCGA-DK-AA71-01 2 238006377 238006377 G C COPS8 Missense_Mutation p.E208Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-DK-AA71-01 2 238289736 238289736 C G COL6A3 Missense_Mutation p.K573N 0.42 probably_damaging(0.969) TCGA-DK-AA71-01 2 242371181 242371181 G C FARP2 Missense_Mutation p.E287Q 0.35 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 2 26177222 26177222 C G KIF3C Missense_Mutation p.E601D 0.29 benign(0.333) TCGA-DK-AA71-01 2 28248147 28248147 G A BRE Missense_Mutation p.E119K 0.34 deleterious(0) possibly_damaging(0.879) TCGA-DK-AA71-01 2 29356663 29356663 G C CLIP4 Missense_Mutation p.L170F 0.30 deleterious(0) probably_damaging(0.924) TCGA-DK-AA71-01 2 30379617 30379617 C G YPEL5 Missense_Mutation p.R34G 0.48 deleterious(0.03) possibly_damaging(0.77) TCGA-DK-AA71-01 2 36787942 36787942 C T FEZ2 Missense_Mutation p.G324S 0.34 tolerated(0.13) benign(0.287) TCGA-DK-AA71-01 2 37105153 37105153 G A STRN Missense_Mutation p.P402S 0.08 tolerated(0.14) benign(0.086) TCGA-DK-AA71-01 2 37234200 37234200 C G HEATR5B Silent p.L1590L 0.54 TCGA-DK-AA71-01 2 42472672 42472672 C A EML4 Missense_Mutation p.S18Y 0.35 deleterious(0.02) probably_damaging(0.984) TCGA-DK-AA71-01 2 44099185 44099185 C G ABCG8 Silent p.L345L 0.47 TCGA-DK-AA71-01 2 46986916 46986916 C T SOCS5 Missense_Mutation p.S416F 0.28 deleterious(0.03) probably_damaging(1) TCGA-DK-AA71-01 2 53992678 53992678 C A ASB3 Missense_Mutation p.C46F 0.05 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 2 54040179 54040179 C G ERLEC1 Missense_Mutation p.H399D 0.54 deleterious(0.02) benign(0.148) TCGA-DK-AA71-01 2 64863212 64863212 G C SERTAD2 Nonsense_Mutation p.S265* 0.47 TCGA-DK-AA71-01 2 69093132 69093132 C T BMP10 Missense_Mutation p.M302I 0.51 tolerated(0.21) benign(0.04) TCGA-DK-AA71-01 2 71650277 71650277 G A ZNF638 Silent p.K1211K 0.27 TCGA-DK-AA71-01 2 71788914 71788914 C G DYSF Missense_Mutation p.S750C 0.23 tolerated(0.25) benign(0.004) TCGA-DK-AA71-01 2 73491063 73491063 C T FBXO41 Intron 0.33 TCGA-DK-AA71-01 2 86333370 86333370 G C PTCD3 5'UTR 0.32 TCGA-DK-AA71-01 2 8926339 8926339 G A KIDINS220 Nonsense_Mutation p.Q646* 0.28 TCGA-DK-AA71-01 2 8930121 8930121 G A KIDINS220 Missense_Mutation p.L504F 0.22 deleterious(0.02) probably_damaging(0.992) TCGA-DK-AA71-01 2 90060486 90060486 C T IGKV6D-21 Missense_Mutation p.P15S 0.46 tolerated(0.5) benign(0.021) TCGA-DK-AA71-01 2 90458391 90458391 C T CH17-132F21.1 Nonsense_Mutation p.Q23* 0.17 TCGA-DK-AA71-01 2 98428913 98428913 C G TMEM131 Missense_Mutation p.E612Q 0.48 tolerated(0.8) benign(0.015) TCGA-DK-AA71-01 2 99725923 99725923 C T TSGA10 5'UTR 0.23 TCGA-DK-AA71-01 2 99988121 99988121 G A EIF5B Missense_Mutation p.E494K 0.17 benign(0.211) TCGA-DK-AA71-01 3 10028277 10028277 G A EMC3 Silent p.I23I 0.31 TCGA-DK-AA71-01 3 100447571 100447571 G A TFG Missense_Mutation p.R95K 0.59 tolerated(0.18) benign(0.018) TCGA-DK-AA71-01 3 112326101 112326101 G A CCDC80 Silent p.L810L 0.25 TCGA-DK-AA71-01 3 112998152 112998152 G A BOC Missense_Mutation p.V624M 0.14 deleterious(0) probably_damaging(0.992) TCGA-DK-AA71-01 3 113377284 113377284 C G KIAA2018 Missense_Mutation p.R1082T 0.57 benign(0.345) TCGA-DK-AA71-01 3 113524363 113524363 G A ATP6V1A Missense_Mutation p.M584I 0.51 deleterious(0.01) possibly_damaging(0.85) TCGA-DK-AA71-01 3 121151827 121151827 A C POLQ Missense_Mutation p.F2533V 0.18 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 3 121441139 121441139 G C GOLGB1 Silent p.L206L 0.25 TCGA-DK-AA71-01 3 122152513 122152513 C T KPNA1 Silent p.Q415Q 0.23 TCGA-DK-AA71-01 3 12421364 12421364 C G PPARG Missense_Mutation p.P82A 0.23 tolerated_low_confidence(0.51) benign(0.006) TCGA-DK-AA71-01 3 147127911 147127911 C T ZIC1 Silent p.D4D 0.50 TCGA-DK-AA71-01 3 14861786 14861786 G A FGD5 Missense_Mutation p.G403E 0.30 tolerated_low_confidence(0.57) benign(0.218) TCGA-DK-AA71-01 3 148917644 148917644 G A CP Silent p.V452V 0.59 TCGA-DK-AA71-01 3 150127271 150127271 C T TSC22D2 Missense_Mutation p.S45F 0.21 deleterious(0) probably_damaging(0.987) TCGA-DK-AA71-01 3 157816076 157816076 G A SHOX2 Nonsense_Mutation p.Q270* 0.52 TCGA-DK-AA71-01 3 158422575 158422575 C G RARRES1 Intron 0.59 TCGA-DK-AA71-01 3 16633639 16633639 C T DAZL Missense_Mutation p.S271N 0.49 deleterious(0.02) possibly_damaging(0.874) TCGA-DK-AA71-01 3 17053290 17053290 C G PLCL2 Missense_Mutation p.Q692E 0.55 tolerated(0.1) benign(0.06) TCGA-DK-AA71-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.63 deleterious(0.04) probably_damaging(0.96) TCGA-DK-AA71-01 3 186302239 186302239 G C DNAJB11 Missense_Mutation p.K291N 0.28 deleterious(0.05) probably_damaging(0.912) TCGA-DK-AA71-01 3 193854434 193854434 G T HES1 Missense_Mutation p.R46L 0.47 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 3 193854451 193854451 G A HES1 Missense_Mutation p.E52K 0.55 deleterious(0.01) benign(0.243) TCGA-DK-AA71-01 3 193854477 193854477 G A HES1 Silent p.L60L 0.67 TCGA-DK-AA71-01 3 194386283 194386283 C T LSG1 Intron 0.17 TCGA-DK-AA71-01 3 195501147 195501147 C A MUC4 Missense_Mutation p.A4325S 0.09 benign(0.053) TCGA-DK-AA71-01 3 196751249 196751249 C T MFI2 Missense_Mutation p.V138M 0.48 deleterious(0) probably_damaging(0.95) TCGA-DK-AA71-01 3 197544164 197544164 G C LRCH3 Missense_Mutation p.L175F 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 3 25638069 25638069 G C RARB Missense_Mutation p.E437Q 0.48 tolerated_low_confidence(0.1) unknown(0) TCGA-DK-AA71-01 3 33415118 33415118 G C FBXL2 Missense_Mutation p.Q168H 0.59 tolerated(0.13) benign(0.219) TCGA-DK-AA71-01 3 36899334 36899334 C G TRANK1 Missense_Mutation p.E583Q 0.25 tolerated(0.32) benign(0.053) TCGA-DK-AA71-01 3 39226252 39226252 G A XIRP1 Missense_Mutation p.S1562F 0.61 deleterious(0.02) probably_damaging(0.997) TCGA-DK-AA71-01 3 41996207 41996207 C G ULK4 Missense_Mutation p.K15N 0.32 tolerated(0.42) benign(0.008) TCGA-DK-AA71-01 3 42754689 42754689 G A CCDC13 Missense_Mutation p.S613L 0.21 tolerated(0.23) benign(0.009) TCGA-DK-AA71-01 3 44496902 44496902 T A ZNF445 Missense_Mutation p.N47I 0.19 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-DK-AA71-01 3 45500280 45500280 G A LARS2 Missense_Mutation p.E218K 0.57 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 3 45715872 45715872 G C LIMD1 Missense_Mutation p.R621T 0.40 deleterious(0) benign(0.358) TCGA-DK-AA71-01 3 4699874 4699874 C T ITPR1 Silent p.L340L 0.34 TCGA-DK-AA71-01 3 4699881 4699881 C T ITPR1 Missense_Mutation p.S342F 0.37 deleterious(0) probably_damaging(0.912) TCGA-DK-AA71-01 3 47730912 47730912 C T SMARCC1 Missense_Mutation p.E410K 0.59 deleterious(0.01) benign(0.318) TCGA-DK-AA71-01 3 49466643 49466643 C T NICN1 Silent p.V10V 0.61 TCGA-DK-AA71-01 3 49847473 49847473 C A UBA7 Missense_Mutation p.D593Y 0.31 deleterious(0) possibly_damaging(0.905) TCGA-DK-AA71-01 3 51746753 51746753 G A GRM2 Missense_Mutation p.E239K 0.41 tolerated(0.39) possibly_damaging(0.889) TCGA-DK-AA71-01 3 53531211 53531211 C G CACNA1D Missense_Mutation p.L34V 0.13 tolerated_low_confidence(0.22) benign(0.003) TCGA-DK-AA71-01 3 57233950 57233950 C T HESX1 5'UTR 0.46 TCGA-DK-AA71-01 3 62636569 62636569 C G CADPS Missense_Mutation p.E386Q 0.15 deleterious(0.01) benign(0.403) TCGA-DK-AA71-01 3 66465449 66465449 C A LRIG1 Missense_Mutation p.G181V 0.32 deleterious(0) probably_damaging(0.98) TCGA-DK-AA71-01 3 69088046 69088046 C T TMF1 Missense_Mutation p.E648K 0.17 deleterious(0.02) possibly_damaging(0.579) TCGA-DK-AA71-01 3 7721873 7721873 C T GRM7 Silent p.F863F 0.32 TCGA-DK-AA71-01 3 78988057 78988057 C G ROBO1 Missense_Mutation p.D65H 0.30 deleterious(0.02) possibly_damaging(0.858) TCGA-DK-AA71-01 3 9027278 9027278 G A SRGAP3 Silent p.G1075G 0.19 TCGA-DK-AA71-01 3 97516934 97516934 G A ARL6 3'UTR 0.48 TCGA-DK-AA71-01 4 108552816 108552816 C T PAPSS1 Silent p.K569K 0.55 TCGA-DK-AA71-01 4 108969761 108969761 C T LEF1 3'UTR 0.42 TCGA-DK-AA71-01 4 110790917 110790917 G T LRIT3 Nonsense_Mutation p.E338* 0.31 TCGA-DK-AA71-01 4 110791183 110791183 G A LRIT3 Silent p.L426L 0.30 TCGA-DK-AA71-01 4 110791367 110791367 G C LRIT3 Missense_Mutation p.E488Q 0.28 tolerated(0.11) benign(0.018) TCGA-DK-AA71-01 4 113539234 113539234 T C C4orf21 Missense_Mutation p.Y655C 0.15 tolerated(0.18) benign(0.003) TCGA-DK-AA71-01 4 124424 124424 C T ZNF718 RNA 0.30 TCGA-DK-AA71-01 4 128716922 128716922 G C HSPA4L Splice_Site p.X56_splice 0.51 TCGA-DK-AA71-01 4 128814936 128814936 C T PLK4 Missense_Mutation p.S821F 0.26 tolerated(0.71) benign(0.048) TCGA-DK-AA71-01 4 146650345 146650345 G A C4orf51 Missense_Mutation p.D131N 0.26 tolerated(0.46) probably_damaging(0.95) TCGA-DK-AA71-01 4 154626152 154626152 A G TLR2 Missense_Mutation p.K698R 0.19 tolerated(0.07) probably_damaging(1) TCGA-DK-AA71-01 4 15937938 15937938 G C FGFBP1 Silent p.L106L 0.55 TCGA-DK-AA71-01 4 159780240 159780240 G A FNIP2 Missense_Mutation p.E297K 0.56 deleterious(0) possibly_damaging(0.644) TCGA-DK-AA71-01 4 169602523 169602523 C T PALLD Silent p.F376F 0.56 TCGA-DK-AA71-01 4 17609189 17609189 C T LAP3 Missense_Mutation p.R513C 0.54 deleterious(0) possibly_damaging(0.612) TCGA-DK-AA71-01 4 177109346 177109346 G A SPATA4 Silent p.L243L 0.22 TCGA-DK-AA71-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.59 deleterious(0) possibly_damaging(0.882) TCGA-DK-AA71-01 4 186545479 186545479 G A SORBS2 Silent p.N464N 0.48 TCGA-DK-AA71-01 4 188924537 188924537 G A ZFP42 Silent p.Q192Q 0.57 TCGA-DK-AA71-01 4 22749185 22749185 C T GBA3 Missense_Mutation p.H185Y 0.17 tolerated(0.09) benign(0.001) TCGA-DK-AA71-01 4 2502458 2502458 C G RNF4 Missense_Mutation p.S66C 0.26 tolerated(0.05) probably_damaging(0.95) TCGA-DK-AA71-01 4 2648539 2648539 G A FAM193A Missense_Mutation p.D140N 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-DK-AA71-01 4 27024343 27024343 C T STIM2 Silent p.L664L 0.57 TCGA-DK-AA71-01 4 3241693 3241693 C G HTT Missense_Mutation p.F3112L 0.40 probably_damaging(0.995) TCGA-DK-AA71-01 4 3443819 3443819 C T HGFAC Missense_Mutation p.R31W 0.27 tolerated_low_confidence(0.18) benign(0) TCGA-DK-AA71-01 4 41749396 41749396 C T PHOX2B Silent p.L133L 0.33 TCGA-DK-AA71-01 4 48566063 48566063 C G FRYL Missense_Mutation p.Q1166H 0.16 deleterious(0.03) benign(0.291) TCGA-DK-AA71-01 4 55127278 55127278 C T PDGFRA Silent p.L22L 0.62 TCGA-DK-AA71-01 4 56316355 56316355 G A CLOCK Silent p.L417L 0.23 TCGA-DK-AA71-01 4 7069742 7069742 C A GRPEL1 Silent p.V6V 0.20 TCGA-DK-AA71-01 4 728727 728727 G C PCGF3 Missense_Mutation p.R39S 0.25 deleterious(0.03) possibly_damaging(0.559) TCGA-DK-AA71-01 4 81188259 81188259 G C FGF5 Missense_Mutation p.R94T 0.32 deleterious(0) probably_damaging(0.971) TCGA-DK-AA71-01 4 82377719 82377719 G C RASGEF1B Intron 0.40 TCGA-DK-AA71-01 4 86988997 86988997 G A MAPK10 Missense_Mutation p.A305V 0.24 tolerated(0.12) benign(0.145) TCGA-DK-AA71-01 4 88533733 88533733 C T DSPP Missense_Mutation p.T132I 0.37 probably_damaging(0.989) TCGA-DK-AA71-01 4 88533842 88533842 C T DSPP Silent p.G168G 0.24 TCGA-DK-AA71-01 5 109091082 109091082 G A MAN2A1 Missense_Mutation p.D254N 0.35 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 5 114860288 114860288 C G FEM1C Missense_Mutation p.R524T 0.22 tolerated(0.38) possibly_damaging(0.744) TCGA-DK-AA71-01 5 121311079 121311079 G A SRFBP1 Missense_Mutation p.M65I 0.42 deleterious(0.01) benign(0.231) TCGA-DK-AA71-01 5 122135419 122135419 G A SNX2 Missense_Mutation p.E87K 0.43 tolerated(0.22) possibly_damaging(0.903) TCGA-DK-AA71-01 5 129040003 129040003 C G ADAMTS19 Silent p.V1071V 0.41 TCGA-DK-AA71-01 5 137419702 137419702 G A WNT8A 5'Flank 0.31 TCGA-DK-AA71-01 5 137767147 137767147 G A KDM3B Missense_Mutation p.E1702K 0.31 deleterious(0) probably_damaging(0.999) TCGA-DK-AA71-01 5 140012199 140012199 C G CD14 Missense_Mutation p.E124Q 0.43 tolerated(0.06) benign(0.095) TCGA-DK-AA71-01 5 140558426 140558426 G C PCDHB8 Missense_Mutation p.D271H 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA71-01 5 140563285 140563285 C T PCDHB16 Missense_Mutation p.S384F 0.40 tolerated_low_confidence(0.06) benign(0.119) TCGA-DK-AA71-01 5 140594718 140594718 G A PCDHB13 Silent p.V341V 0.41 TCGA-DK-AA71-01 5 140870908 140870908 G T PCDHGC5 Missense_Mutation p.V701F 0.41 deleterious(0) benign(0.276) TCGA-DK-AA71-01 5 140903796 140903796 T A DIAPH1 Missense_Mutation p.E1192V 0.42 probably_damaging(0.961) TCGA-DK-AA71-01 5 141035204 141035204 G C ARAP3 Missense_Mutation p.S1365C 0.12 deleterious(0) probably_damaging(0.99) TCGA-DK-AA71-01 5 141335104 141335104 C T PCDH12 Silent p.Q771Q 0.25 TCGA-DK-AA71-01 5 14508126 14508126 C G TRIO Missense_Mutation p.I2963M 0.51 unknown(0) TCGA-DK-AA71-01 5 14601545 14601545 G A FAM105A Missense_Mutation p.M114I 0.45 tolerated(0.28) benign(0.106) TCGA-DK-AA71-01 5 149918879 149918879 C A NDST1 Silent p.I509I 0.39 TCGA-DK-AA71-01 5 150886890 150886890 G A FAT2 Silent p.L4114L 0.42 TCGA-DK-AA71-01 5 158603709 158603709 G C RNF145 Silent p.L214L 0.34 TCGA-DK-AA71-01 5 159842170 159842170 T A SLU7 Missense_Mutation p.K44N 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-DK-AA71-01 5 16067578 16067578 T G MARCH11 3'UTR 0.04 TCGA-DK-AA71-01 5 167812239 167812239 C T WWC1 Nonsense_Mutation p.R85* 0.14 TCGA-DK-AA71-01 5 168096931 168096931 C G SLIT3 Missense_Mutation p.G1398A 0.45 tolerated(0.6) benign(0.003) TCGA-DK-AA71-01 5 168096985 168096985 C G SLIT3 Missense_Mutation p.G1380A 0.33 deleterious(0.01) probably_damaging(1) TCGA-DK-AA71-01 5 168187890 168187890 C G SLIT3 Missense_Mutation p.K554N 0.37 deleterious(0.03) possibly_damaging(0.889) TCGA-DK-AA71-01 5 175812329 175812329 C G NOP16 Splice_Site p.X96_splice 0.46 TCGA-DK-AA71-01 5 177681976 177681976 C T COL23A1 Missense_Mutation p.D312N 0.44 tolerated(0.67) probably_damaging(0.998) TCGA-DK-AA71-01 5 180486653 180486653 G A BTNL9 Missense_Mutation p.D467N 0.51 tolerated(0.1) possibly_damaging(0.467) TCGA-DK-AA71-01 5 205849 205849 C T CCDC127 Missense_Mutation p.E116K 0.45 tolerated(0.08) possibly_damaging(0.781) TCGA-DK-AA71-01 5 24511624 24511624 C T CDH10 Splice_Site p.X272_splice 0.23 TCGA-DK-AA71-01 5 37125474 37125474 C T C5orf42 Missense_Mutation p.D2890N 0.11 deleterious(0) benign(0.102) TCGA-DK-AA71-01 5 54637572 54637572 G C SKIV2L2 Missense_Mutation p.D252H 0.38 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 5 644422 644422 G C CEP72 Missense_Mutation p.L516F 0.35 deleterious(0) probably_damaging(0.976) TCGA-DK-AA71-01 5 68568803 68568803 G A CDK7 Missense_Mutation p.D267N 0.45 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 5 74077787 74077787 G C FAM169A Missense_Mutation p.S504C 0.37 deleterious(0.01) possibly_damaging(0.792) TCGA-DK-AA71-01 5 78135224 78135224 C A ARSB Nonsense_Mutation p.E390* 0.34 TCGA-DK-AA71-01 5 78915520 78915520 C T PAPD4 Nonsense_Mutation p.Q17* 0.42 TCGA-DK-AA71-01 5 89943314 89943314 G C GPR98 Splice_Site p.X1008_splice 0.39 TCGA-DK-AA71-01 5 95084081 95084081 A G RHOBTB3 Missense_Mutation p.S154G 0.35 tolerated(0.11) possibly_damaging(0.527) TCGA-DK-AA71-01 6 109771742 109771742 G A MICAL1 Missense_Mutation p.R318W 0.79 deleterious(0.02) possibly_damaging(0.582) TCGA-DK-AA71-01 6 11005635 11005635 G A ELOVL2 Silent p.I75I 0.79 TCGA-DK-AA71-01 6 126206331 126206331 G A NCOA7 Silent p.V242V 0.74 TCGA-DK-AA71-01 6 128313846 128313846 C G PTPRK Missense_Mutation p.Q957H 0.74 tolerated(1) probably_damaging(0.981) TCGA-DK-AA71-01 6 150322232 150322232 C T RAET1K RNA 0.66 TCGA-DK-AA71-01 6 160164694 160164694 C T WTAP Intron 0.31 TCGA-DK-AA71-01 6 161470150 161470150 C A MAP3K4 Missense_Mutation p.F282L 0.77 tolerated(0.94) benign(0.001) TCGA-DK-AA71-01 6 26104323 26104323 C G HIST1H4C Missense_Mutation p.L50V 0.79 deleterious(0.02) benign(0.059) TCGA-DK-AA71-01 6 26273397 26273397 C G HIST1H2BI Missense_Mutation p.S65C 0.70 deleterious_low_confidence(0) benign(0.401) TCGA-DK-AA71-01 6 38875731 38875731 G C DNAH8 Splice_Site p.X2900_splice 0.72 TCGA-DK-AA71-01 6 38875828 38875828 G C DNAH8 Missense_Mutation p.D2932H 0.78 probably_damaging(0.989) TCGA-DK-AA71-01 6 4116163 4116163 G A ECI2 Missense_Mutation p.S377L 0.73 deleterious(0.03) probably_damaging(0.979) TCGA-DK-AA71-01 6 41766416 41766416 C T USP49 Silent p.%3D 0.82 TCGA-DK-AA71-01 6 46135835 46135835 C T ENPP5 Missense_Mutation p.M55I 0.78 tolerated(0.9) benign(0.072) TCGA-DK-AA71-01 6 49427001 49427001 A G MUT Missense_Mutation p.I60T 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-DK-AA71-01 6 53372390 53372390 G A GCLC Silent p.I324I 0.75 TCGA-DK-AA71-01 6 56504131 56504131 C A DST Nonsense_Mutation p.E427* 0.28 TCGA-DK-AA71-01 6 56915593 56915593 C G KIAA1586 Missense_Mutation p.L43V 0.79 deleterious_low_confidence(0.02) benign(0.028) TCGA-DK-AA71-01 6 69943264 69943264 C T BAI3 Missense_Mutation p.R855C 0.80 deleterious(0.01) probably_damaging(0.916) TCGA-DK-AA71-01 6 96651872 96651872 A G FUT9 Missense_Mutation p.I281V 0.78 tolerated(0.75) benign(0.059) TCGA-DK-AA71-01 7 100017485 100017485 C G ZCWPW1 Missense_Mutation p.R17T 0.25 deleterious(0) benign(0.044) TCGA-DK-AA71-01 7 100283850 100283850 C T GIGYF1 Missense_Mutation p.E301K 0.52 deleterious(0.03) unknown(0) TCGA-DK-AA71-01 7 103003799 103003799 G A PSMC2 Silent p.E168E 0.26 TCGA-DK-AA71-01 7 105177032 105177032 C G RINT1 Missense_Mutation p.L37V 0.30 tolerated_low_confidence(0.54) benign(0.001) TCGA-DK-AA71-01 7 107013196 107013196 G C COG5 Missense_Mutation p.Q258E 0.35 deleterious(0.02) possibly_damaging(0.729) TCGA-DK-AA71-01 7 108205229 108205229 C T THAP5 Silent p.E198E 0.59 TCGA-DK-AA71-01 7 111970160 111970160 G A ZNF277 Silent p.E230E 0.23 TCGA-DK-AA71-01 7 117307016 117307016 G C CFTR Missense_Mutation p.E1433Q 0.18 tolerated(0.12) benign(0.208) TCGA-DK-AA71-01 7 119914980 119914980 C T KCND2 Silent p.F98F 0.32 TCGA-DK-AA71-01 7 123302379 123302379 C T LMOD2 Silent p.L247L 0.36 TCGA-DK-AA71-01 7 131853249 131853249 G A PLXNA4 Missense_Mutation p.S1367F 0.41 deleterious(0.01) probably_damaging(0.917) TCGA-DK-AA71-01 7 132973744 132973744 G T EXOC4 Missense_Mutation p.W115C 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 7 138203978 138203978 C T TRIM24 Missense_Mutation p.H226Y 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA71-01 7 142180965 142180965 G A TRBV6-5 5'UTR 0.58 TCGA-DK-AA71-01 7 143027909 143027909 C T CLCN1 Missense_Mutation p.R300W 0.53 deleterious(0) possibly_damaging(0.539) TCGA-DK-AA71-01 7 148963928 148963928 G A ZNF783 Missense_Mutation p.D147N 0.47 deleterious(0.05) possibly_damaging(0.787) TCGA-DK-AA71-01 7 150556084 150556084 G A AOC1 Missense_Mutation p.D602N 0.67 tolerated(0.68) benign(0.004) TCGA-DK-AA71-01 7 30329483 30329483 C G ZNRF2 Intron 0.29 TCGA-DK-AA71-01 7 38356716 38356716 C T TRGV9 Missense_Mutation p.E90K 0.45 tolerated(0.28) possibly_damaging(0.83) TCGA-DK-AA71-01 7 44104937 44104937 G A PGAM2 Silent p.I64I 0.31 TCGA-DK-AA71-01 7 4955668 4955668 G C MMD2 Missense_Mutation p.I111M 0.55 deleterious(0) probably_damaging(0.996) TCGA-DK-AA71-01 7 5399035 5399035 G T TNRC18 Silent p.I1609I 0.53 TCGA-DK-AA71-01 7 6150955 6150955 C G USP42 Missense_Mutation p.S64W 0.40 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 7 72873955 72873955 G A BAZ1B Missense_Mutation p.P1115S 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-DK-AA71-01 7 73520223 73520223 G A LIMK1 Missense_Mutation p.M209I 0.50 tolerated(1) benign(0.002) TCGA-DK-AA71-01 7 75167446 75167446 G C HIP1 3'UTR 0.51 TCGA-DK-AA71-01 7 80380631 80380631 C G SEMA3C Silent p.V555V 0.16 TCGA-DK-AA71-01 7 86810644 86810644 G C DMTF1 Missense_Mutation p.E233Q 0.35 deleterious(0.02) possibly_damaging(0.616) TCGA-DK-AA71-01 7 87179185 87179185 A G ABCB1 Silent p.F512F 0.26 TCGA-DK-AA71-01 7 91503429 91503429 G A MTERF Missense_Mutation p.H227Y 0.32 tolerated(0.31) benign(0.027) TCGA-DK-AA71-01 7 91503921 91503921 G C MTERF Missense_Mutation p.H63D 0.22 tolerated(0.63) benign(0) TCGA-DK-AA71-01 7 91739511 91739511 G C AKAP9 3'UTR 0.53 TCGA-DK-AA71-01 7 92818553 92818553 C G HEPACAM2 3'UTR 0.25 TCGA-DK-AA71-01 7 93055752 93055752 C T CALCR Silent p.L481L 0.48 TCGA-DK-AA71-01 8 100729396 100729396 C T VPS13B Intron 0.47 TCGA-DK-AA71-01 8 104778557 104778557 C G RIMS2 Missense_Mutation p.Q164E 0.50 tolerated_low_confidence(0.35) benign(0.001) TCGA-DK-AA71-01 8 110420286 110420286 G C PKHD1L1 Missense_Mutation p.D608H 0.38 deleterious(0.03) possibly_damaging(0.553) TCGA-DK-AA71-01 8 118819474 118819474 C G EXT1 Missense_Mutation p.G622A 0.21 tolerated(0.25) benign(0.217) TCGA-DK-AA71-01 8 121290428 121290428 G C COL14A1 Missense_Mutation p.D1098H 0.39 tolerated(0.06) possibly_damaging(0.89) TCGA-DK-AA71-01 8 124748037 124748037 G A ANXA13 Silent p.L32L 0.36 TCGA-DK-AA71-01 8 124748039 124748039 G A ANXA13 Missense_Mutation p.L32F 0.36 tolerated(0.73) benign(0.295) TCGA-DK-AA71-01 8 130760706 130760706 G A GSDMC 3'UTR 0.46 TCGA-DK-AA71-01 8 133492888 133492888 C G KCNQ3 5'UTR 0.44 TCGA-DK-AA71-01 8 133953703 133953703 C G TG Missense_Mutation p.L1717V 0.13 deleterious(0.04) benign(0.079) TCGA-DK-AA71-01 8 144896053 144896053 G A SCRIB Silent p.I97I 0.47 TCGA-DK-AA71-01 8 17824575 17824575 C T PCM1 Missense_Mutation p.S1103L 0.64 tolerated(0.19) benign(0.124) TCGA-DK-AA71-01 8 19263315 19263315 C G CSGALNACT1 Missense_Mutation p.Q525H 0.36 tolerated(0.52) unknown(0) TCGA-DK-AA71-01 8 23115857 23115857 C G CHMP7 Silent p.L285L 0.39 TCGA-DK-AA71-01 8 25343313 25343313 C G CDCA2 Silent p.L468L 0.46 TCGA-DK-AA71-01 8 29927506 29927506 C G TMEM66 Missense_Mutation p.E118Q 0.22 deleterious(0.01) possibly_damaging(0.66) TCGA-DK-AA71-01 8 38279349 38279349 G A FGFR1 Silent p.L380L 0.16 TCGA-DK-AA71-01 8 42174242 42174242 G C IKBKB Missense_Mutation p.L315F 0.41 deleterious(0) possibly_damaging(0.894) TCGA-DK-AA71-01 8 51569549 51569549 G A SNTG1 Silent p.L310L 0.43 TCGA-DK-AA71-01 8 61765639 61765639 G A CHD7 Missense_Mutation p.D2119N 0.51 probably_damaging(0.992) TCGA-DK-AA71-01 8 8747917 8747918 - T MFHAS1 Nonsense_Mutation p.Y884* 0.19 TCGA-DK-AA71-01 8 87498732 87498732 G C RMDN1 Nonsense_Mutation p.S159* 0.50 TCGA-DK-AA71-01 8 90995001 90995001 C G NBN Silent p.S40S 0.44 TCGA-DK-AA71-01 9 100079428 100079428 G A CCDC180 Missense_Mutation p.E337K 0.56 deleterious(0) probably_damaging(0.989) TCGA-DK-AA71-01 9 103055170 103055170 T A INVS Silent p.T877T 0.27 TCGA-DK-AA71-01 9 111705142 111705142 T A CTNNAL1 Intron 0.32 TCGA-DK-AA71-01 9 128003382 128003382 C T HSPA5 Silent p.A8A 0.55 TCGA-DK-AA71-01 9 128064710 128064710 G A GAPVD1 Missense_Mutation p.E212K 0.32 deleterious(0) probably_damaging(0.996) TCGA-DK-AA71-01 9 128065099 128065099 G C GAPVD1 Silent p.L341L 0.24 TCGA-DK-AA71-01 9 130241761 130241761 G A LRSAM1 Missense_Mutation p.E294K 0.33 tolerated(0.22) possibly_damaging(0.871) TCGA-DK-AA71-01 9 133570941 133570941 G C EXOSC2 Missense_Mutation p.R62T 0.29 deleterious(0) benign(0.32) TCGA-DK-AA71-01 9 135278023 135278023 G C TTF1 Silent p.L62L 0.28 TCGA-DK-AA71-01 9 135278067 135278067 G C TTF1 Missense_Mutation p.Q48E 0.36 tolerated(0.72) benign(0.217) TCGA-DK-AA71-01 9 137619132 137619132 C G COL5A1 Silent p.L225L 0.46 TCGA-DK-AA71-01 9 139760724 139760724 G C EDF1 5'UTR 0.42 TCGA-DK-AA71-01 9 139910426 139910426 C G ABCA2 Missense_Mutation p.R1102T 0.41 tolerated(0.18) benign(0.026) TCGA-DK-AA71-01 9 140008715 140008715 G C DPP7 Missense_Mutation p.L101V 0.54 deleterious(0) probably_damaging(0.963) TCGA-DK-AA71-01 9 140972630 140972630 G A CACNA1B Missense_Mutation p.E1672K 0.50 tolerated(0.54) benign(0.007) TCGA-DK-AA71-01 9 19316746 19316746 T A DENND4C Silent p.S572S 0.05 TCGA-DK-AA71-01 9 3247911 3247911 T C RFX3 Intron 0.76 TCGA-DK-AA71-01 9 34610887 34610887 G A RPP25L Missense_Mutation p.P136L 0.22 deleterious(0) probably_damaging(0.997) TCGA-DK-AA71-01 9 35616039 35616039 C T CD72 Missense_Mutation p.E197K 0.76 tolerated(0.07) benign(0.285) TCGA-DK-AA71-01 9 37745773 37745773 C G FRMPD1 Silent p.V1248V 0.83 TCGA-DK-AA71-01 9 39086787 39086787 C G CNTNAP3 Missense_Mutation p.D1094H 0.68 deleterious(0.04) possibly_damaging(0.903) TCGA-DK-AA71-01 9 40773896 40773896 C T ZNF658 Missense_Mutation p.R460K 0.14 tolerated(0.12) benign(0.002) TCGA-DK-AA71-01 9 71835934 71835934 G C TJP2 Missense_Mutation p.R189S 0.21 tolerated(0.06) benign(0.419) TCGA-DK-AA71-01 9 75406925 75406925 C T TMC1 Missense_Mutation p.L450F 0.20 tolerated(1) benign(0.002) TCGA-DK-AA71-01 9 84609660 84609660 C T SPATA31D1 Silent p.I1425I 0.15 TCGA-DK-AA71-01 9 88916288 88916288 C G ZCCHC6 Missense_Mutation p.K1441N 0.26 deleterious(0) possibly_damaging(0.722) TCGA-DK-AA71-01 9 91150544 91150544 C A NXNL2 Missense_Mutation p.F65L 0.43 tolerated(0.13) benign(0.128) TCGA-DK-AA71-01 9 95410412 95410412 G C IPPK Missense_Mutation p.P145A 0.18 deleterious(0) probably_damaging(0.992) TCGA-DK-AA71-01 9 95475810 95475810 G A BICD2 3'UTR 0.33 TCGA-DK-AA71-01 9 96305578 96305578 C T FAM120A Missense_Mutation p.L662F 0.47 deleterious(0.04) probably_damaging(0.963) TCGA-DK-AA71-01 9 98218581 98218581 C G PTCH1 Missense_Mutation p.E1095Q 0.62 deleterious(0) probably_damaging(0.995) TCGA-DK-AA71-01 X 101624611 101624611 C T NXF2B Missense_Mutation p.E94K 0.44 tolerated(0.16) benign(0.066) TCGA-DK-AA71-01 X 107939585 107939585 C T COL4A5 Nonsense_Mutation p.Q1685* 0.86 TCGA-DK-AA71-01 X 123179197 123179197 C T STAG2 Nonsense_Mutation p.R216* 0.07 TCGA-DK-AA71-01 X 123210252 123210262 TTGTAAGCTAA - STAG2 Frame_Shift_Del p.K870Ifs*21 0.70 TCGA-DK-AA71-01 X 125685954 125685954 C T DCAF12L1 Missense_Mutation p.R213H 0.91 deleterious(0.04) possibly_damaging(0.546) TCGA-DK-AA71-01 X 134994489 134994489 G C SAGE1 Missense_Mutation p.R844T 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-DK-AA71-01 X 149867760 149867760 C T MTMR1 Missense_Mutation p.S80F 0.91 deleterious(0.03) possibly_damaging(0.713) TCGA-DK-AA71-01 X 150832623 150832623 G A PASD1 Missense_Mutation p.E292K 0.93 deleterious(0.04) possibly_damaging(0.542) TCGA-DK-AA71-01 X 153588464 153588464 G A FLNA Silent p.I1233I 0.91 TCGA-DK-AA71-01 X 15376161 15376161 G C FIGF Missense_Mutation p.I152M 0.94 tolerated(0.24) benign(0.009) TCGA-DK-AA71-01 X 53223466 53223466 G C KDM5C Missense_Mutation p.S1298C 0.76 deleterious(0.01) possibly_damaging(0.88) TCGA-DK-AA71-01 X 54841756 54841756 G A MAGED2 Missense_Mutation p.E488K 0.78 tolerated(0.34) benign(0.32) TCGA-DK-AA71-01 X 55042022 55042022 G C ALAS2 Missense_Mutation p.S386C 0.77 deleterious(0) probably_damaging(0.996) TCGA-DK-AA71-01 X 70837223 70837223 C G CXCR3 Missense_Mutation p.E80D 0.83 tolerated(0.29) benign(0.013) TCGA-DK-AA71-01 X 7137587 7137587 G C STS 5'UTR 0.90 TCGA-DK-AA71-01 X 7137658 7137658 G A STS 5'UTR 0.91 TCGA-DK-AA71-01 Y 24327101 24327101 G A RBMY1F Missense_Mutation p.H6Y 0.16 tolerated(0.41) benign(0.053) TCGA-DK-AA74-01 10 122659635 122659635 G C WDR11 Missense_Mutation p.L870F 0.06 deleterious(0.01) possibly_damaging(0.595) TCGA-DK-AA74-01 10 129909918 129909918 C G MKI67 Missense_Mutation p.D751H 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-AA74-01 10 135197569 135197569 T A PAOX Missense_Mutation p.L325Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-DK-AA74-01 10 17152924 17152924 G C CUBN Missense_Mutation p.P337A 0.09 deleterious(0) probably_damaging(1) TCGA-DK-AA74-01 10 52103869 52103869 C G SGMS1 Missense_Mutation p.K2N 0.15 tolerated(0.16) benign(0.006) TCGA-DK-AA74-01 10 72358631 72358631 C T PRF1 Silent p.K282K 0.12 TCGA-DK-AA74-01 10 72358632 72358632 T A PRF1 Missense_Mutation p.K282M 0.12 tolerated(0.1) benign(0.412) TCGA-DK-AA74-01 10 72360117 72360117 C G PRF1 Intron 0.10 TCGA-DK-AA74-01 10 72360166 72360166 C T PRF1 Missense_Mutation p.D165N 0.13 deleterious(0) probably_damaging(0.978) TCGA-DK-AA74-01 10 7765418 7765418 T C ITIH2 Missense_Mutation p.F291S 0.08 tolerated(0.24) benign(0.061) TCGA-DK-AA74-01 10 7785174 7785174 G C ITIH2 Missense_Mutation p.D721H 0.05 deleterious(0) probably_damaging(0.954) TCGA-DK-AA74-01 10 95720153 95720153 G A PIPSL RNA 0.13 TCGA-DK-AA74-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.12 TCGA-DK-AA74-01 10 98708782 98708782 G T LCOR 5'UTR 0.07 TCGA-DK-AA74-01 11 1009194 1009194 C T AP2A2 Nonsense_Mutation p.Q839* 0.24 TCGA-DK-AA74-01 11 113674600 113674600 C G USP28 Splice_Site p.X887_splice 0.07 TCGA-DK-AA74-01 11 119181112 119181112 C G MCAM Missense_Mutation p.E620Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-DK-AA74-01 11 119290957 119290957 C G THY1 Missense_Mutation p.K59N 0.06 deleterious(0.01) possibly_damaging(0.867) TCGA-DK-AA74-01 11 122929402 122929402 T C HSPA8 Missense_Mutation p.N487S 0.13 deleterious_low_confidence(0.04) benign(0.07) TCGA-DK-AA74-01 11 130106920 130106920 G A ZBTB44 Missense_Mutation p.R446C 0.07 tolerated(0.12) benign(0.041) TCGA-DK-AA74-01 11 33667299 33667299 C G KIAA1549L Missense_Mutation p.S1529C 0.15 deleterious(0.01) probably_damaging(0.933) TCGA-DK-AA74-01 11 47198416 47198416 C A ARFGAP2 5'UTR 0.17 TCGA-DK-AA74-01 11 48238661 48238661 C A OR4B1 Missense_Mutation p.F100L 0.13 deleterious(0) probably_damaging(0.998) TCGA-DK-AA74-01 11 4976690 4976690 C T OR51A2 Missense_Mutation p.S85N 0.15 tolerated(0.18) benign(0.139) TCGA-DK-AA74-01 11 55563529 55563529 C T OR5D14 Silent p.L166L 0.11 TCGA-DK-AA74-01 11 55861592 55861592 C T OR8I2 Missense_Mutation p.A270V 0.20 deleterious(0.02) possibly_damaging(0.767) TCGA-DK-AA74-01 11 58207139 58207139 G C OR5B12 Missense_Mutation p.F162L 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.57) TCGA-DK-AA74-01 11 62381883 62381883 C G ROM1 Silent p.L248L 0.07 TCGA-DK-AA74-01 11 63065134 63065134 C T SLC22A10 Silent p.F255F 0.08 TCGA-DK-AA74-01 11 65123927 65123927 C G TIGD3 Silent p.L216L 0.13 TCGA-DK-AA74-01 11 65123957 65123957 C G TIGD3 Missense_Mutation p.I226M 0.10 deleterious(0.01) benign(0.274) TCGA-DK-AA74-01 11 6644990 6644990 G C DCHS1 Missense_Mutation p.F2639L 0.13 deleterious(0) possibly_damaging(0.542) TCGA-DK-AA74-01 11 70170529 70170529 G T PPFIA1 Nonsense_Mutation p.E96* 0.09 TCGA-DK-AA74-01 11 70176393 70176393 G A PPFIA1 Missense_Mutation p.E349K 0.44 deleterious(0) probably_damaging(0.915) TCGA-DK-AA74-01 11 70269092 70269092 G A CTTN Silent p.R279R 0.30 TCGA-DK-AA74-01 11 74168307 74168307 G A KCNE3 Missense_Mutation p.S101F 0.16 deleterious(0) possibly_damaging(0.845) TCGA-DK-AA74-01 12 100452894 100452894 A C UHRF1BP1L Missense_Mutation p.S721A 0.18 tolerated(0.43) benign(0.043) TCGA-DK-AA74-01 12 102158160 102158160 C G GNPTAB Missense_Mutation p.Q845H 0.13 tolerated(0.42) benign(0) TCGA-DK-AA74-01 12 105382019 105382019 G C C12orf45 Missense_Mutation p.E64Q 0.18 tolerated(0.25) benign(0.077) TCGA-DK-AA74-01 12 109670534 109670534 C T ACACB Silent p.F1354F 0.13 TCGA-DK-AA74-01 12 113826395 113826395 C G PLBD2 Silent p.L578L 0.10 TCGA-DK-AA74-01 12 116418557 116418557 C T MED13L Missense_Mutation p.E1788K 0.12 deleterious(0) probably_damaging(0.965) TCGA-DK-AA74-01 12 120598036 120598036 G C GCN1L1 Missense_Mutation p.I820M 0.08 probably_damaging(0.943) TCGA-DK-AA74-01 12 125461916 125461916 G A DHX37 Nonsense_Mutation p.Q287* 0.09 TCGA-DK-AA74-01 12 21471748 21471748 A G SLCO1A2 Missense_Mutation p.L57P 0.08 deleterious(0) probably_damaging(0.932) TCGA-DK-AA74-01 12 42858233 42858233 C A PRICKLE1 Missense_Mutation p.D535Y 0.09 deleterious(0.03) probably_damaging(1) TCGA-DK-AA74-01 12 45568328 45568328 C G PLEKHA8P1 RNA 0.11 TCGA-DK-AA74-01 12 50869458 50869458 G C LARP4 Missense_Mutation p.E662D 0.09 tolerated(0.16) benign(0.048) TCGA-DK-AA74-01 12 51685995 51685995 G C BIN2 Missense_Mutation p.L299V 0.08 tolerated(0.09) possibly_damaging(0.459) TCGA-DK-AA74-01 12 51686015 51686015 G A BIN2 Missense_Mutation p.S292F 0.12 tolerated(0.06) benign(0.013) TCGA-DK-AA74-01 12 51686045 51686045 G C BIN2 Missense_Mutation p.S282C 0.13 deleterious(0) probably_damaging(0.94) TCGA-DK-AA74-01 12 53689366 53689366 T G PFDN5 Missense_Mutation p.I5M 0.07 deleterious(0.03) benign(0.098) TCGA-DK-AA74-01 12 54422624 54422624 G C HOXC6 Missense_Mutation p.E107Q 0.07 tolerated(0.24) benign(0.278) TCGA-DK-AA74-01 12 55820541 55820541 C T OR6C76 Silent p.S168S 0.14 TCGA-DK-AA74-01 12 57440334 57440334 A G MYO1A Splice_Site p.X214_splice 0.12 TCGA-DK-AA74-01 12 57994210 57994210 G C PIP4K2C Missense_Mutation p.R268T 0.09 deleterious(0.05) possibly_damaging(0.857) TCGA-DK-AA74-01 12 57994702 57994702 G A PIP4K2C Missense_Mutation p.E308K 0.14 deleterious(0.04) benign(0.403) TCGA-DK-AA74-01 12 79689944 79689944 G A SYT1 Silent p.K190K 0.11 TCGA-DK-AA74-01 12 80014972 80014972 C T PAWR Missense_Mutation p.E178K 0.09 deleterious(0.01) possibly_damaging(0.749) TCGA-DK-AA74-01 14 105414248 105414248 C T AHNAK2 Missense_Mutation p.E2514K 0.18 benign(0.053) TCGA-DK-AA74-01 14 24675793 24675793 C G TSSK4 Missense_Mutation p.L102V 0.10 deleterious(0) possibly_damaging(0.869) TCGA-DK-AA74-01 14 24884395 24884395 C T NYNRIN Missense_Mutation p.S1147F 0.20 deleterious(0) possibly_damaging(0.766) TCGA-DK-AA74-01 14 38293137 38293137 G C TTC6 Missense_Mutation p.R1650T 0.15 deleterious(0) probably_damaging(1) TCGA-DK-AA74-01 14 39583561 39583561 G T GEMIN2 Nonsense_Mutation p.E18* 0.20 TCGA-DK-AA74-01 14 50052766 50052766 G C RPS29 Missense_Mutation p.R22G 0.06 deleterious(0.02) probably_damaging(0.971) TCGA-DK-AA74-01 14 57741284 57741284 G C AP5M1 Missense_Mutation p.E133Q 0.07 tolerated(0.28) benign(0.005) TCGA-DK-AA74-01 14 57741530 57741530 G A AP5M1 Missense_Mutation p.E215K 0.09 deleterious(0.02) possibly_damaging(0.489) TCGA-DK-AA74-01 14 61997260 61997260 G A RP11-47I22.4 Missense_Mutation p.E75K 0.18 tolerated(0.1) benign(0.074) TCGA-DK-AA74-01 14 81943477 81943477 C G SEL1L Missense_Mutation p.E742Q 0.25 tolerated(0.15) possibly_damaging(0.706) TCGA-DK-AA74-01 14 89124637 89124637 G A EML5 Silent p.G1257G 0.07 TCGA-DK-AA74-01 14 94156581 94156581 C T UNC79 Silent p.L2264L 0.08 TCGA-DK-AA74-01 14 96848696 96848696 G C GSKIP Missense_Mutation p.E38Q 0.09 tolerated(0.22) benign(0.189) TCGA-DK-AA74-01 15 25421983 25421983 C T SNORD115-4 RNA 0.03 TCGA-DK-AA74-01 15 31321590 31321590 G A TRPM1 Silent p.Y1061Y 0.09 TCGA-DK-AA74-01 15 34520651 34520651 C A EMC4 Nonsense_Mutation p.S126* 0.10 TCGA-DK-AA74-01 15 42529684 42529684 C G TMEM87A Missense_Mutation p.E272Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-AA74-01 15 49255182 49255182 C A SHC4 Nonsense_Mutation p.G11* 0.07 TCGA-DK-AA74-01 15 70959535 70959535 G A UACA Missense_Mutation p.S1163F 0.11 deleterious(0) probably_damaging(0.998) TCGA-DK-AA74-01 15 70959536 70959536 A T UACA Missense_Mutation p.S1163T 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-DK-AA74-01 15 75659887 75659887 C T MAN2C1 Missense_Mutation p.E106K 0.10 deleterious(0) probably_damaging(1) TCGA-DK-AA74-01 16 20981309 20981309 C T DNAH3 Missense_Mutation p.E2755K 0.10 deleterious(0) probably_damaging(0.982) TCGA-DK-AA74-01 16 22359128 22359128 G A CDR2 Missense_Mutation p.H175Y 0.07 tolerated(0.16) probably_damaging(0.999) TCGA-DK-AA74-01 16 2314627 2314627 C A RNPS1 Silent p.V6V 0.07 TCGA-DK-AA74-01 16 23197720 23197720 G A SCNN1G Missense_Mutation p.R43H 0.07 deleterious(0) probably_damaging(1) TCGA-DK-AA74-01 16 2814814 2814814 G C SRRM2 Missense_Mutation p.D1429H 0.07 unknown(0) TCGA-DK-AA74-01 16 30532938 30532938 G T ITGAL Silent p.L1155L 0.13 TCGA-DK-AA74-01 16 50825577 50825577 C T CYLD Silent p.I739I 0.19 TCGA-DK-AA74-01 16 633034 633034 G A PIGQ Silent p.L561L 0.09 TCGA-DK-AA74-01 16 67213970 67213970 C G KIAA0895L Missense_Mutation p.E182Q 0.08 tolerated(0.42) benign(0.171) TCGA-DK-AA74-01 16 70900073 70900073 C G HYDIN Missense_Mutation p.E3824Q 0.13 possibly_damaging(0.859) TCGA-DK-AA74-01 17 27904203 27904203 G A GIT1 Silent p.L357L 0.13 TCGA-DK-AA74-01 17 37564371 37564371 G A MED1 Missense_Mutation p.S1368F 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-AA74-01 17 43924288 43924288 G C SPPL2C Missense_Mutation p.L672F 0.13 tolerated_low_confidence(0.22) benign(0.005) TCGA-DK-AA74-01 17 45232121 45232121 G A CDC27 Missense_Mutation p.P292S 0.15 tolerated(0.12) benign(0.059) TCGA-DK-AA74-01 17 48435844 48435844 G T XYLT2 Nonsense_Mutation p.E740* 0.16 TCGA-DK-AA74-01 17 48452825 48452825 G A EME1 Missense_Mutation p.E86K 0.08 tolerated(0.24) benign(0.353) TCGA-DK-AA74-01 17 48452831 48452831 G A EME1 Missense_Mutation p.E88K 0.07 tolerated(0.09) benign(0.125) TCGA-DK-AA74-01 17 61949479 61949479 C T CSH2 3'UTR 0.17 TCGA-DK-AA74-01 17 7311985 7311985 G C NLGN2 Missense_Mutation p.Q137H 0.12 deleterious(0.02) probably_damaging(0.983) TCGA-DK-AA74-01 17 73266270 73266270 C T MIF4GD Missense_Mutation p.E3K 0.10 tolerated_low_confidence(0.07) benign(0.056) TCGA-DK-AA74-01 17 73974990 73974990 G T ACOX1 Intron 0.16 TCGA-DK-AA74-01 17 74075550 74075550 C A ZACN Missense_Mutation p.S43Y 0.10 deleterious(0.03) benign(0.249) TCGA-DK-AA74-01 17 7578179 7578179 C A TP53 Nonsense_Mutation p.E224* 0.16 TCGA-DK-AA74-01 18 19263473 19263473 T C ABHD3 Intron 0.14 TCGA-DK-AA74-01 18 3255818 3255818 G A MYL12A Missense_Mutation p.E140K 0.27 deleterious(0.03) benign(0.1) TCGA-DK-AA74-01 18 63511110 63511110 C T CDH7 Silent p.A348A 0.10 TCGA-DK-AA74-01 18 70417658 70417658 C T NETO1 Missense_Mutation p.E394K 0.06 deleterious(0) probably_damaging(0.99) TCGA-DK-AA74-01 19 11215960 11215960 C T LDLR Silent p.F126F 0.13 TCGA-DK-AA74-01 19 17389748 17389748 G A BABAM1 Missense_Mutation p.C294Y 0.11 tolerated(0.06) probably_damaging(0.979) TCGA-DK-AA74-01 19 19606977 19606977 C T GATAD2A Silent p.L291L 0.09 TCGA-DK-AA74-01 19 19625487 19625487 G C TSSK6 Missense_Mutation p.F250L 0.09 tolerated(0.26) possibly_damaging(0.492) TCGA-DK-AA74-01 19 19823026 19823026 C G ZNF14 Missense_Mutation p.R355T 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-DK-AA74-01 19 36212422 36212422 C G KMT2B Missense_Mutation p.P725A 0.10 benign(0.162) TCGA-DK-AA74-01 19 36606535 36606535 G C TBCB Missense_Mutation p.E25Q 0.12 tolerated(0.22) benign(0.084) TCGA-DK-AA74-01 19 37618244 37618244 G A ZNF420 Missense_Mutation p.M117I 0.17 tolerated(0.81) benign(0.019) TCGA-DK-AA74-01 19 37618253 37618253 C T ZNF420 Silent p.F120F 0.17 TCGA-DK-AA74-01 19 37619998 37619998 C T ZNF420 3'UTR 0.09 TCGA-DK-AA74-01 19 44514903 44514903 A C ZNF230 Missense_Mutation p.I238L 0.05 tolerated(0.6) benign(0.001) TCGA-DK-AA74-01 19 46627361 46627361 C T IGFL3 Silent p.G44G 0.11 TCGA-DK-AA74-01 19 4941878 4941878 C T UHRF1 RNA 0.21 TCGA-DK-AA74-01 19 49622342 49622342 G A C19orf73 5'UTR 0.32 TCGA-DK-AA74-01 19 49965866 49965866 G A ALDH16A1 Missense_Mutation p.E318K 0.06 tolerated(0.53) benign(0.068) TCGA-DK-AA74-01 19 53643916 53643916 G C ZNF347 Nonsense_Mutation p.S723* 0.08 TCGA-DK-AA74-01 19 6684833 6684833 C T C3 Missense_Mutation p.E1328K 0.14 tolerated(0.11) benign(0.021) TCGA-DK-AA74-01 1 109806318 109806318 C T CELSR2 Silent p.L1640L 0.19 TCGA-DK-AA74-01 1 110921711 110921711 C A SLC16A4 Missense_Mutation p.G265V 0.10 tolerated(0.16) possibly_damaging(0.598) TCGA-DK-AA74-01 1 113650242 113650242 G A LRIG2 Missense_Mutation p.C447Y 0.16 deleterious(0) probably_damaging(0.966) TCGA-DK-AA74-01 1 12835266 12835266 G C PRAMEF12 Missense_Mutation p.D86H 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-DK-AA74-01 1 154548389 154548389 C G CHRNB2 Nonsense_Mutation p.S497* 0.17 TCGA-DK-AA74-01 1 156246951 156246951 G C SMG5 Missense_Mutation p.L127V 0.12 deleterious(0) possibly_damaging(0.57) TCGA-DK-AA74-01 1 157514224 157514224 G C FCRL5 Silent p.L224L 0.07 TCGA-DK-AA74-01 1 158815459 158815459 A T MNDA Missense_Mutation p.K218I 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-DK-AA74-01 1 168250519 168250519 C G TBX19 Missense_Mutation p.T64S 0.08 deleterious(0) probably_damaging(0.998) TCGA-DK-AA74-01 1 176659488 176659488 G T PAPPA2 Nonsense_Mutation p.E785* 0.16 TCGA-DK-AA74-01 1 183520998 183520998 G C SMG7 Intron 0.10 TCGA-DK-AA74-01 1 185939535 185939535 G A HMCN1 Missense_Mutation p.E761K 0.11 probably_damaging(0.991) TCGA-DK-AA74-01 1 202302388 202302388 C A UBE2T Missense_Mutation p.D121Y 0.14 deleterious(0.03) probably_damaging(0.997) TCGA-DK-AA74-01 1 202302662 202302662 C A UBE2T Missense_Mutation p.Q67H 0.13 tolerated(0.08) possibly_damaging(0.673) TCGA-DK-AA74-01 1 212538680 212538680 G A TMEM206 Silent p.L371L 0.13 TCGA-DK-AA74-01 1 227922992 227922992 G A JMJD4 Nonsense_Mutation p.R41* 0.25 TCGA-DK-AA74-01 1 237777841 237777841 C T RYR2 Missense_Mutation p.H1805Y 0.12 benign(0.107) TCGA-DK-AA74-01 1 240256793 240256793 G A FMN2 Missense_Mutation p.V462I 0.14 unknown(0) TCGA-DK-AA74-01 1 247978921 247978921 C T OR14A16 Silent p.L37L 0.07 TCGA-DK-AA74-01 1 45809424 45809424 C T TOE1 3'UTR 0.24 TCGA-DK-AA74-01 1 47838777 47838777 G A CMPK1 Missense_Mutation p.E157K 0.22 deleterious(0.03) possibly_damaging(0.899) TCGA-DK-AA74-01 1 59248506 59248506 C G JUN Silent p.L79L 0.07 TCGA-DK-AA74-01 1 68948209 68948209 C G DEPDC1 Missense_Mutation p.D428H 0.08 deleterious(0.02) possibly_damaging(0.907) TCGA-DK-AA74-01 1 78429378 78429378 C A FUBP1 Missense_Mutation p.G355V 0.15 tolerated(0.6) probably_damaging(1) TCGA-DK-AA74-01 1 85135389 85135389 A G SSX2IP Missense_Mutation p.L134P 0.07 deleterious(0) probably_damaging(0.999) TCGA-DK-AA74-01 1 89427164 89427164 G C CCBL2 Missense_Mutation p.S189C 0.06 deleterious(0) benign(0.091) TCGA-DK-AA74-01 1 89657021 89657021 G A GBP4 Missense_Mutation p.S280L 0.10 tolerated(0.19) benign(0.049) TCGA-DK-AA74-01 1 91812991 91812991 A T HFM1 Nonsense_Mutation p.L750* 0.04 TCGA-DK-AA74-01 1 93167736 93167736 G C EVI5 Missense_Mutation p.Q245E 0.11 deleterious(0) possibly_damaging(0.838) TCGA-DK-AA74-01 20 16506747 16506747 G A KIF16B Missense_Mutation p.S74L 0.16 deleterious(0) possibly_damaging(0.557) TCGA-DK-AA74-01 20 32199070 32199070 C G CBFA2T2 Missense_Mutation p.L126V 0.05 deleterious(0) probably_damaging(0.981) TCGA-DK-AA74-01 20 33509640 33509640 G A ACSS2 Missense_Mutation p.E520K 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-DK-AA74-01 20 35858416 35858416 C T RPN2 Missense_Mutation p.S512L 0.23 deleterious(0.03) benign(0.094) TCGA-DK-AA74-01 20 36869993 36869993 C G KIAA1755 Missense_Mutation p.K180N 0.06 deleterious(0) benign(0.057) TCGA-DK-AA74-01 20 37547235 37547235 C G PPP1R16B Missense_Mutation p.P544A 0.16 deleterious(0) possibly_damaging(0.847) TCGA-DK-AA74-01 20 3766568 3766568 G A CENPB Missense_Mutation p.S188L 0.26 deleterious(0.05) unknown(0) TCGA-DK-AA74-01 20 6031504 6031504 G C LRRN4 Missense_Mutation p.Q261E 0.06 deleterious(0) benign(0.345) TCGA-DK-AA74-01 20 62844907 62844907 C T MYT1 Missense_Mutation p.A513V 0.15 probably_damaging(0.955) TCGA-DK-AA74-01 21 32598146 32598146 T A TIAM1 Nonsense_Mutation p.K569* 0.09 TCGA-DK-AA74-01 21 32598155 32598155 C T TIAM1 Missense_Mutation p.E566K 0.10 deleterious(0.01) possibly_damaging(0.861) TCGA-DK-AA74-01 21 38538366 38538366 G C TTC3 Missense_Mutation p.E1284Q 0.12 tolerated(0.08) possibly_damaging(0.884) TCGA-DK-AA74-01 21 38538902 38538902 G C TTC3 Missense_Mutation p.Q1462H 0.09 deleterious(0.02) benign(0.014) TCGA-DK-AA74-01 21 43282052 43282052 C G PRDM15 Missense_Mutation p.E228D 0.21 deleterious_low_confidence(0) benign(0) TCGA-DK-AA74-01 21 43413043 43413043 C G ZBTB21 Missense_Mutation p.D388H 0.07 deleterious(0) possibly_damaging(0.572) TCGA-DK-AA74-01 22 19468563 19468563 G A CDC45 Missense_Mutation p.E67K 0.16 deleterious(0.01) possibly_damaging(0.474) TCGA-DK-AA74-01 22 47071377 47071377 C T GRAMD4 Silent p.F497F 0.08 TCGA-DK-AA74-01 2 102781372 102781372 C G IL1R1 Missense_Mutation p.S67C 0.08 tolerated(0.05) benign(0.087) TCGA-DK-AA74-01 2 10563186 10563186 C T HPCAL1 Silent p.I152I 0.18 TCGA-DK-AA74-01 2 144709638 144709638 C T GTDC1 Missense_Mutation p.E402K 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-DK-AA74-01 2 166536066 166536066 G A CSRNP3 Missense_Mutation p.E521K 0.10 deleterious_low_confidence(0.01) benign(0.107) TCGA-DK-AA74-01 2 172314900 172314900 G C DCAF17 Missense_Mutation p.D251H 0.06 tolerated(0.07) possibly_damaging(0.908) TCGA-DK-AA74-01 2 179444660 179444660 G A TTN Intron 0.19 TCGA-DK-AA74-01 2 190656532 190656532 G A PMS1 5'UTR 0.12 TCGA-DK-AA74-01 2 190927061 190927061 G A MSTN Missense_Mutation p.R88W 0.12 deleterious(0) possibly_damaging(0.67) TCGA-DK-AA74-01 2 202149666 202149666 C T CASP8 Silent p.F369F 0.06 TCGA-DK-AA74-01 2 202149749 202149749 C G CASP8 Missense_Mutation p.S397C 0.05 deleterious(0) probably_damaging(0.988) TCGA-DK-AA74-01 2 20478446 20478446 G C PUM2 Missense_Mutation p.P619A 0.11 tolerated(0.11) probably_damaging(0.999) TCGA-DK-AA74-01 2 21231348 21231348 C G APOB Missense_Mutation p.E2798Q 0.06 benign(0.07) TCGA-DK-AA74-01 2 216256419 216256419 C T FN1 Silent p.V1396V 0.08 TCGA-DK-AA74-01 2 219411748 219411748 G C USP37 Missense_Mutation p.P166A 0.05 deleterious(0.01) possibly_damaging(0.706) TCGA-DK-AA74-01 2 223499122 223499122 C T FARSB Missense_Mutation p.M198I 0.08 deleterious(0.04) possibly_damaging(0.477) TCGA-DK-AA74-01 2 237276918 237276918 G C IQCA1 Missense_Mutation p.L530V 0.23 deleterious(0) possibly_damaging(0.625) TCGA-DK-AA74-01 2 242438521 242438521 G C STK25 Silent p.L218L 0.09 TCGA-DK-AA74-01 2 242542382 242542382 C T THAP4 Intron 0.15 TCGA-DK-AA74-01 2 26717916 26717916 C T OTOF Missense_Mutation p.R264Q 0.10 tolerated(0.17) probably_damaging(0.999) TCGA-DK-AA74-01 2 32706501 32706501 C G BIRC6 Missense_Mutation p.L2508V 0.15 probably_damaging(0.978) TCGA-DK-AA74-01 2 43797571 43797571 C T THADA Missense_Mutation p.E715K 0.11 tolerated(0.14) benign(0.006) TCGA-DK-AA74-01 2 74275318 74275318 G C TET3 Missense_Mutation p.K623N 0.21 deleterious(0) possibly_damaging(0.841) TCGA-DK-AA74-01 2 85571159 85571159 G A RETSAT Missense_Mutation p.S499L 0.06 tolerated(0.16) benign(0.005) TCGA-DK-AA74-01 2 85571797 85571797 G T RETSAT Silent p.I392I 0.09 TCGA-DK-AA74-01 3 107776334 107776334 C T CD47 Missense_Mutation p.M289I 0.07 tolerated(0.28) probably_damaging(0.968) TCGA-DK-AA74-01 3 111688640 111688640 C G PHLDB2 Nonsense_Mutation p.S1140* 0.09 TCGA-DK-AA74-01 3 121366186 121366186 C G HCLS1 Missense_Mutation p.E90Q 0.10 tolerated(0.13) possibly_damaging(0.728) TCGA-DK-AA74-01 3 12861667 12861667 G A CAND2 Silent p.L1009L 0.14 TCGA-DK-AA74-01 3 137750013 137750013 G A CLDN18 3'UTR 0.22 TCGA-DK-AA74-01 3 140997339 140997339 G A ACPL2 Missense_Mutation p.E79K 0.07 deleterious(0.01) probably_damaging(0.927) TCGA-DK-AA74-01 3 142188289 142188289 G A ATR Nonsense_Mutation p.R2148* 0.13 TCGA-DK-AA74-01 3 151545702 151545702 C T AADAC Silent p.F314F 0.11 TCGA-DK-AA74-01 3 170885057 170885057 G T TNIK Nonsense_Mutation p.S259* 0.12 TCGA-DK-AA74-01 3 170885059 170885059 C A TNIK Missense_Mutation p.W258C 0.11 deleterious(0) unknown(0) TCGA-DK-AA74-01 3 193361161 193361161 G C OPA1 Splice_Site p.X418_splice 0.09 TCGA-DK-AA74-01 3 197023309 197023309 G C DLG1 Nonsense_Mutation p.S20* 0.19 TCGA-DK-AA74-01 3 33434083 33434083 C G UBP1 Missense_Mutation p.E519D 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-DK-AA74-01 3 35729370 35729370 C G ARPP21 Nonsense_Mutation p.S134* 0.07 TCGA-DK-AA74-01 3 37365137 37365137 C G GOLGA4 Nonsense_Mutation p.S609* 0.19 TCGA-DK-AA74-01 3 38104165 38104165 C T DLEC1 Missense_Mutation p.R323W 0.15 deleterious(0) probably_damaging(0.999) TCGA-DK-AA74-01 3 44952578 44952578 G A TGM4 Missense_Mutation p.E579K 0.10 deleterious(0.01) benign(0.205) TCGA-DK-AA74-01 3 47703896 47703896 T C SMARCC1 Missense_Mutation p.M696V 0.20 deleterious(0.02) possibly_damaging(0.852) TCGA-DK-AA74-01 3 57496588 57496588 C G DNAH12 Missense_Mutation p.R133T 0.12 tolerated(0.06) benign(0.098) TCGA-DK-AA74-01 3 87289889 87289889 G C CHMP2B Missense_Mutation p.Q25H 0.10 tolerated(0.13) possibly_damaging(0.606) TCGA-DK-AA74-01 4 110932597 110932597 G T EGF Nonsense_Mutation p.E1204* 0.10 TCGA-DK-AA74-01 4 123664142 123664142 G C BBS12 Missense_Mutation p.E365D 0.09 deleterious(0.01) possibly_damaging(0.741) TCGA-DK-AA74-01 4 17516837 17516837 C A CLRN2 5'UTR 0.11 TCGA-DK-AA74-01 4 189068280 189068280 C G TRIML1 Nonsense_Mutation p.Y387* 0.05 TCGA-DK-AA74-01 4 23816168 23816168 G A PPARGC1A Missense_Mutation p.S313F 0.17 deleterious(0) possibly_damaging(0.625) TCGA-DK-AA74-01 4 48169934 48169934 C T TEC Missense_Mutation p.D178N 0.19 tolerated(0.43) benign(0.001) TCGA-DK-AA74-01 4 5399952 5399952 T C STK32B Silent p.N151N 0.25 TCGA-DK-AA74-01 4 7064149 7064149 C G GRPEL1 Missense_Mutation p.Q90H 0.24 deleterious(0.01) benign(0.063) TCGA-DK-AA74-01 4 7684552 7684552 G A SORCS2 Missense_Mutation p.R475H 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-DK-AA74-01 4 77317466 77317466 C G CCDC158 Missense_Mutation p.E82Q 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-DK-AA74-01 4 88414829 88414829 G C SPARCL1 Missense_Mutation p.Q375E 0.09 tolerated(0.06) benign(0.114) TCGA-DK-AA74-01 4 95147413 95147413 G C SMARCAD1 Missense_Mutation p.E112Q 0.05 tolerated_low_confidence(0.35) benign(0.005) TCGA-DK-AA74-01 5 127681160 127681160 C T FBN2 Missense_Mutation p.E1036K 0.14 tolerated(0.17) benign(0.103) TCGA-DK-AA74-01 5 13753401 13753401 C T DNAH5 Missense_Mutation p.D3605N 0.09 possibly_damaging(0.822) TCGA-DK-AA74-01 5 140084142 140084142 G A ZMAT2 Missense_Mutation p.E148K 0.09 tolerated(0.23) benign(0.175) TCGA-DK-AA74-01 5 140719825 140719825 C A PCDHGA2 Missense_Mutation p.N429K 0.14 deleterious_low_confidence(0.03) benign(0.043) TCGA-DK-AA74-01 5 150090851 150090851 C T DCTN4 Missense_Mutation p.V422M 0.22 deleterious(0) probably_damaging(0.992) TCGA-DK-AA74-01 5 180625769 180625769 G A TRIM7 Silent p.V303V 0.08 TCGA-DK-AA74-01 5 32089627 32089627 G C PDZD2 Missense_Mutation p.E2025Q 0.07 deleterious(0.01) possibly_damaging(0.759) TCGA-DK-AA74-01 5 35988620 35988620 G C UGT3A1 Missense_Mutation p.S43C 0.13 deleterious(0) benign(0.272) TCGA-DK-AA74-01 5 40692172 40692172 G A PTGER4 Missense_Mutation p.E387K 0.09 deleterious(0.02) possibly_damaging(0.787) TCGA-DK-AA74-01 5 72848611 72848611 G A ANKRA2 3'UTR 0.12 TCGA-DK-AA74-01 6 100957868 100957868 C G ASCC3 Missense_Mutation p.G2134A 0.09 tolerated(0.11) possibly_damaging(0.619) TCGA-DK-AA74-01 6 102250284 102250284 A G GRIK2 Missense_Mutation p.I392V 0.07 tolerated(0.3) benign(0.012) TCGA-DK-AA74-01 6 117866679 117866679 C T DCBLD1 Nonsense_Mutation p.Q512* 0.17 TCGA-DK-AA74-01 6 124979382 124979382 G C NKAIN2 Missense_Mutation p.W108C 0.11 deleterious(0) probably_damaging(0.964) TCGA-DK-AA74-01 6 125330322 125330322 C A RNF217 Intron 0.16 TCGA-DK-AA74-01 6 136687111 136687111 C T MAP7 Silent p.P367P 0.06 TCGA-DK-AA74-01 6 151673298 151673298 C T AKAP12 Silent p.L1258L 0.23 TCGA-DK-AA74-01 6 155565861 155565861 G A TIAM2 Missense_Mutation p.D1163N 0.12 deleterious(0) possibly_damaging(0.706) TCGA-DK-AA74-01 6 157150436 157150436 C T ARID1B Nonsense_Mutation p.Q540* 0.06 TCGA-DK-AA74-01 6 26156929 26156929 C G HIST1H1E Missense_Mutation p.S104C 0.06 deleterious(0) probably_damaging(0.944) TCGA-DK-AA74-01 6 31474083 31474083 G A MICB Missense_Mutation p.M163I 0.06 tolerated(0.25) benign(0.001) TCGA-DK-AA74-01 6 33173674 33173674 G A HSD17B8 Silent p.Q212Q 0.18 TCGA-DK-AA74-01 6 35387922 35387922 C T PPARD Missense_Mutation p.S50L 0.20 deleterious(0) benign(0.004) TCGA-DK-AA74-01 6 43269968 43269968 G C SLC22A7 Silent p.L364L 0.08 TCGA-DK-AA74-01 6 43477254 43477254 G C LRRC73 Silent p.L90L 0.21 TCGA-DK-AA74-01 6 55739619 55739619 G C BMP5 Silent p.L15L 0.19 TCGA-DK-AA74-01 7 102760075 102760075 C A NAPEPLD Missense_Mutation p.R297I 0.09 deleterious(0.02) benign(0.145) TCGA-DK-AA74-01 7 11446945 11446945 A G THSD7A Missense_Mutation p.C1302R 0.31 deleterious(0) probably_damaging(1) TCGA-DK-AA74-01 7 128494236 128494236 G A FLNC Silent p.L2231L 0.26 TCGA-DK-AA74-01 7 129909506 129909506 C T CPA2 Intron 0.14 TCGA-DK-AA74-01 7 142149063 142149063 C T TRBV5-5 Missense_Mutation p.E70K 0.13 tolerated(0.16) benign(0.003) TCGA-DK-AA74-01 7 142919936 142919936 C T TAS2R40 Silent p.L255L 0.09 TCGA-DK-AA74-01 7 150725599 150725599 C T ABCB8 5'UTR 0.20 TCGA-DK-AA74-01 7 21747378 21747378 T G DNAH11 Nonsense_Mutation p.L2210* 0.14 TCGA-DK-AA74-01 7 70255739 70255739 C T AUTS2 Silent p.L1179L 0.27 TCGA-DK-AA74-01 7 80394560 80394560 C G SEMA3C Splice_Site p.X452_splice 0.12 TCGA-DK-AA74-01 8 101251514 101251514 A G SPAG1 Missense_Mutation p.D721G 0.19 deleterious(0) probably_damaging(0.996) TCGA-DK-AA74-01 8 110497279 110497279 G A PKHD1L1 Missense_Mutation p.E3195K 0.18 deleterious(0.01) benign(0.146) TCGA-DK-AA74-01 8 11710940 11710940 G A CTSB Silent p.L8L 0.08 TCGA-DK-AA74-01 8 13959954 13959954 C T SGCZ Silent p.V225V 0.12 TCGA-DK-AA74-01 8 139703091 139703091 G A COL22A1 Silent p.P927P 0.19 TCGA-DK-AA74-01 8 143694673 143694673 C A ARC Missense_Mutation p.E320D 0.11 tolerated(0.06) probably_damaging(0.987) TCGA-DK-AA74-01 8 30938631 30938631 T C WRN Missense_Mutation p.L363P 0.06 tolerated(0.17) benign(0.003) TCGA-DK-AA74-01 8 41906179 41906179 G A KAT6A Missense_Mutation p.A106V 0.12 possibly_damaging(0.841) TCGA-DK-AA74-01 8 67808531 67808531 G A MCMDC2 Missense_Mutation p.R469K 0.17 tolerated(1) benign(0.001) TCGA-DK-AA74-01 8 70744789 70744789 G A SLCO5A1 Silent p.V40V 0.13 TCGA-DK-AA74-01 8 77767483 77767483 G A ZFHX4 Missense_Mutation p.E2776K 0.25 probably_damaging(0.979) TCGA-DK-AA74-01 8 97299303 97299303 G C PTDSS1 Missense_Mutation p.E124Q 0.16 tolerated(0.4) benign(0.078) TCGA-DK-AA74-01 8 99129400 99129400 G A HRSP12 5'UTR 0.30 TCGA-DK-AA74-01 9 104171027 104171027 G A ZNF189 Missense_Mutation p.R326Q 0.25 tolerated(0.13) possibly_damaging(0.691) TCGA-DK-AA74-01 9 113704128 113704128 G C LPAR1 Silent p.L122L 0.20 TCGA-DK-AA74-01 9 113704446 113704446 G C LPAR1 Missense_Mutation p.F16L 0.29 tolerated_low_confidence(0.66) benign(0.001) TCGA-DK-AA74-01 9 114089989 114089989 G A OR2K2 Missense_Mutation p.A242V 0.13 deleterious(0) probably_damaging(0.996) TCGA-DK-AA74-01 9 117844198 117844198 C G TNC Missense_Mutation p.D753H 0.15 deleterious(0) probably_damaging(0.997) TCGA-DK-AA74-01 9 134769290 134769290 G C MED27 Silent p.V221V 0.36 TCGA-DK-AA74-01 9 14859264 14859264 G A FREM1 Missense_Mutation p.P183L 0.09 deleterious(0) probably_damaging(1) TCGA-DK-AA74-01 9 86284123 86284123 G A UBQLN1 Nonsense_Mutation p.Q409* 0.21 TCGA-DK-AA74-01 9 90503511 90503511 G C SPATA31E1 Missense_Mutation p.R1370T 0.21 deleterious(0.01) possibly_damaging(0.756) TCGA-DK-AA74-01 X 142803759 142803759 C G SPANXN2 Missense_Mutation p.E2Q 0.26 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-DK-AA74-01 X 151093095 151093095 G C MAGEA4 3'UTR 0.29 TCGA-DK-AA74-01 X 2933398 2933398 C T ARSH Missense_Mutation p.S243F 0.15 tolerated(0.21) benign(0.078) TCGA-DK-AA74-01 X 32361349 32361349 G A DMD Nonsense_Mutation p.Q1881* 0.33 TCGA-DK-AA74-01 X 51239032 51239032 G C NUDT11 Missense_Mutation p.R89G 0.09 deleterious(0.01) benign(0.311) TCGA-DK-AA74-01 X 56291640 56291640 C T KLF8 Missense_Mutation p.P37S 0.12 tolerated_low_confidence(0.34) benign(0.011) TCGA-DK-AA74-01 X 73963761 73963761 T C KIAA2022 Missense_Mutation p.K211E 0.23 deleterious(0) probably_damaging(0.998) TCGA-DK-AA74-01 Y 16952354 16952354 G C NLGN4Y Missense_Mutation p.E555Q 0.24 deleterious(0.03) possibly_damaging(0.631) TCGA-DK-AA75-01 10 100995299 100995299 G A HPSE2 Silent p.I87I 0.33 TCGA-DK-AA75-01 10 112724252 112724252 A T SHOC2 Nonsense_Mutation p.K46* 0.27 TCGA-DK-AA75-01 10 123503368 123503368 C T ATE1 Missense_Mutation p.E462K 0.16 tolerated(0.06) benign(0.031) TCGA-DK-AA75-01 10 123845774 123845774 G A TACC2 Silent p.V1253V 0.41 TCGA-DK-AA75-01 10 124058540 124058540 A G BTBD16 Missense_Mutation p.T228A 0.33 tolerated(0.62) benign(0.017) TCGA-DK-AA75-01 10 126090300 126090300 G A OAT Missense_Mutation p.L337F 0.18 deleterious(0.02) benign(0.203) TCGA-DK-AA75-01 10 127684014 127684014 C T FANK1 Silent p.H115H 0.16 TCGA-DK-AA75-01 10 135020454 135020454 G C KNDC1 Silent p.L1192L 0.27 TCGA-DK-AA75-01 10 15760884 15760884 A C ITGA8 Missense_Mutation p.V75G 0.10 deleterious(0) probably_damaging(0.982) TCGA-DK-AA75-01 10 18254554 18254554 C T SLC39A12 Missense_Mutation p.S229F 0.20 deleterious(0.01) possibly_damaging(0.563) TCGA-DK-AA75-01 10 30318525 30318525 G T KIAA1462 Silent p.V184V 0.29 TCGA-DK-AA75-01 10 49459609 49459609 C G FRMPD2 Missense_Mutation p.D51H 0.18 tolerated(0.11) probably_damaging(0.948) TCGA-DK-AA75-01 10 50315961 50315961 G A VSTM4 Silent p.L45L 0.26 TCGA-DK-AA75-01 10 50532657 50532657 G C C10orf71 Missense_Mutation p.Q689H 0.24 deleterious(0.04) probably_damaging(0.922) TCGA-DK-AA75-01 10 50958926 50958926 G A OGDHL Silent p.S285S 0.27 TCGA-DK-AA75-01 10 53459151 53459151 C T CSTF2T Silent p.T53T 0.28 TCGA-DK-AA75-01 10 54074419 54074419 G A DKK1 Silent p.Q75Q 0.19 TCGA-DK-AA75-01 10 58117899 58117899 C T ZWINT 3'UTR 0.29 TCGA-DK-AA75-01 10 62039329 62039329 T A ANK3 Silent p.I61I 0.55 TCGA-DK-AA75-01 10 72179697 72179697 T G EIF4EBP2 Missense_Mutation p.F58C 0.23 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 10 72292491 72292491 A G PALD1 Missense_Mutation p.T250A 0.24 tolerated(0.05) possibly_damaging(0.729) TCGA-DK-AA75-01 10 8115823 8115823 C T GATA3 Missense_Mutation p.S391L 0.32 tolerated(0.06) probably_damaging(0.916) TCGA-DK-AA75-01 10 85965618 85965618 G A CDHR1 Missense_Mutation p.G300R 0.57 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 10 90524173 90524173 G T LIPN Missense_Mutation p.R78L 0.22 deleterious(0.01) possibly_damaging(0.852) TCGA-DK-AA75-01 10 95360687 95360687 G A RBP4 Silent p.F33F 0.28 TCGA-DK-AA75-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.23 TCGA-DK-AA75-01 10 96306213 96306213 T C HELLS Silent p.L37L 0.29 TCGA-DK-AA75-01 10 97987298 97987298 C T BLNK Missense_Mutation p.E77K 0.20 deleterious(0.05) benign(0.097) TCGA-DK-AA75-01 10 99160234 99160234 G A RRP12 Missense_Mutation p.S66F 0.19 deleterious(0.02) benign(0.396) TCGA-DK-AA75-01 11 111789624 111789624 C T C11orf52 5'UTR 0.33 TCGA-DK-AA75-01 11 116650538 116650538 T A ZNF259 Missense_Mutation p.M399L 0.31 tolerated(0.63) benign(0.001) TCGA-DK-AA75-01 11 117098969 117098969 C G PCSK7 Missense_Mutation p.G189A 0.25 deleterious(0.02) probably_damaging(1) TCGA-DK-AA75-01 11 118104205 118104205 C T MPZL3 Silent p.A217A 0.47 TCGA-DK-AA75-01 11 118971823 118971823 C T DPAGT1 Missense_Mutation p.G63S 0.24 deleterious(0.04) probably_damaging(1) TCGA-DK-AA75-01 11 126145304 126145304 C T FOXRED1 Silent p.F238F 0.36 TCGA-DK-AA75-01 11 130069911 130069911 G A ST14 Missense_Mutation p.E625K 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 11 132081933 132081933 G T NTM Nonsense_Mutation p.E140* 0.25 TCGA-DK-AA75-01 11 18636988 18636988 G C SPTY2D1 Missense_Mutation p.S278C 0.25 deleterious(0.01) possibly_damaging(0.7) TCGA-DK-AA75-01 11 18637102 18637102 G C SPTY2D1 Missense_Mutation p.T240R 0.27 tolerated(0.07) possibly_damaging(0.507) TCGA-DK-AA75-01 11 18637196 18637196 C T SPTY2D1 Missense_Mutation p.E209K 0.29 deleterious(0.03) benign(0.292) TCGA-DK-AA75-01 11 18735591 18735591 G A IGSF22 Missense_Mutation p.P635S 0.32 tolerated(0.19) benign(0.194) TCGA-DK-AA75-01 11 19256301 19256301 T C E2F8 Silent p.E252E 0.48 TCGA-DK-AA75-01 11 45986877 45986877 G A PHF21A Missense_Mutation p.L328F 0.57 tolerated(0.06) benign(0.058) TCGA-DK-AA75-01 11 46747498 46747498 C T F2 Missense_Mutation p.R217W 0.16 deleterious(0.04) possibly_damaging(0.849) TCGA-DK-AA75-01 11 46792402 46792402 G A CKAP5 Missense_Mutation p.A1041V 0.30 deleterious(0.04) probably_damaging(0.966) TCGA-DK-AA75-01 11 47652135 47652135 G A MTCH2 Missense_Mutation p.R171W 0.26 deleterious(0) possibly_damaging(0.893) TCGA-DK-AA75-01 11 4928760 4928760 C T OR51A7 Missense_Mutation p.S54L 0.18 deleterious(0.01) benign(0.365) TCGA-DK-AA75-01 11 55904438 55904438 C A OR8J3 Missense_Mutation p.G253W 0.18 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 11 56757009 56757009 G A OR5AK2 Silent p.L207L 0.27 TCGA-DK-AA75-01 11 57089342 57089342 G A TNKS1BP1 Silent p.L6L 0.61 TCGA-DK-AA75-01 11 60170419 60170419 C G MS4A14 Missense_Mutation p.S118C 0.28 tolerated(0.07) possibly_damaging(0.617) TCGA-DK-AA75-01 11 62288796 62288796 C G AHNAK Missense_Mutation p.D4365H 0.28 probably_damaging(0.967) TCGA-DK-AA75-01 11 62343411 62343411 G A TUT1 Missense_Mutation p.L632F 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 11 63990539 63990539 G A FERMT3 Missense_Mutation p.D568N 0.68 deleterious(0) probably_damaging(0.954) TCGA-DK-AA75-01 11 63990598 63990598 C T FERMT3 Silent p.D587D 0.18 TCGA-DK-AA75-01 11 64359098 64359098 C G SLC22A12 Missense_Mutation p.L24V 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-DK-AA75-01 11 64359154 64359154 C A SLC22A12 Silent p.A42A 0.23 TCGA-DK-AA75-01 11 65268709 65268709 G C MALAT1 RNA 0.12 TCGA-DK-AA75-01 11 65545842 65545842 C T AP5B1 Missense_Mutation p.E708K 0.22 tolerated(0.79) benign(0.001) TCGA-DK-AA75-01 11 65546637 65546637 C T AP5B1 Missense_Mutation p.E443K 0.21 tolerated(0.09) benign(0.015) TCGA-DK-AA75-01 11 65546814 65546814 C T AP5B1 Missense_Mutation p.E384K 0.15 tolerated(0.81) benign(0.045) TCGA-DK-AA75-01 11 65727395 65727395 C G SART1 5'Flank 0.68 TCGA-DK-AA75-01 11 65826374 65826374 C T SF3B2 Missense_Mutation p.S347F 0.11 deleterious(0.03) benign(0.272) TCGA-DK-AA75-01 11 66083639 66083639 C A CD248 Missense_Mutation p.G287V 0.79 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 11 66131809 66131809 C G SLC29A2 Missense_Mutation p.Q382H 0.18 deleterious(0.03) benign(0.258) TCGA-DK-AA75-01 11 73067326 73067326 G C ARHGEF17 Missense_Mutation p.S1257T 0.36 deleterious(0.04) benign(0.053) TCGA-DK-AA75-01 11 8009014 8009014 C T EIF3F Missense_Mutation p.P39S 0.59 tolerated_low_confidence(0.1) unknown(0) TCGA-DK-AA75-01 11 82877632 82877632 C G PCF11 Missense_Mutation p.R565G 0.16 deleterious(0) probably_damaging(0.979) TCGA-DK-AA75-01 11 82996933 82996933 G A CCDC90B Missense_Mutation p.S28L 0.50 tolerated(0.09) benign(0.007) TCGA-DK-AA75-01 11 92533509 92533509 A C FAT3 Missense_Mutation p.M2444L 0.49 benign(0.035) TCGA-DK-AA75-01 12 100657670 100657670 T C DEPDC4 Silent p.G53G 0.31 TCGA-DK-AA75-01 12 102127436 102127436 C G SYCP3 Missense_Mutation p.E124Q 0.11 tolerated(0.17) possibly_damaging(0.795) TCGA-DK-AA75-01 12 102494875 102494875 T A NUP37 Missense_Mutation p.T97S 0.32 tolerated(0.08) benign(0.035) TCGA-DK-AA75-01 12 110618349 110618349 A G IFT81 Silent p.Q437Q 0.64 TCGA-DK-AA75-01 12 111729243 111729243 C T CUX2 Missense_Mutation p.A108V 0.16 tolerated(0.39) benign(0.002) TCGA-DK-AA75-01 12 112492301 112492301 G C NAA25 Missense_Mutation p.Q507E 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-DK-AA75-01 12 113448240 113448240 C T OAS2 Missense_Mutation p.S704L 0.34 tolerated(0.23) benign(0.005) TCGA-DK-AA75-01 12 116446394 116446394 G A MED13L Silent p.L608L 0.25 TCGA-DK-AA75-01 12 117513142 117513142 G A TESC Missense_Mutation p.S21L 0.42 deleterious(0) possibly_damaging(0.801) TCGA-DK-AA75-01 12 120146118 120146118 C G CIT Missense_Mutation p.E1693Q 0.12 deleterious(0.03) possibly_damaging(0.816) TCGA-DK-AA75-01 12 121678660 121678660 G A CAMKK2 Nonsense_Mutation p.R537* 0.33 TCGA-DK-AA75-01 12 123213833 123213833 T G HCAR1 3'UTR 0.09 TCGA-DK-AA75-01 12 123834910 123834910 C G SBNO1 Missense_Mutation p.D27H 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DK-AA75-01 12 125609328 125609328 C T AACS Intron 0.09 TCGA-DK-AA75-01 12 133234465 133234465 C G POLE Missense_Mutation p.D1123H 0.17 deleterious(0) probably_damaging(0.989) TCGA-DK-AA75-01 12 15822384 15822384 C T EPS8 Silent p.L151L 0.28 TCGA-DK-AA75-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.57 TCGA-DK-AA75-01 12 26592246 26592246 G C ITPR2 Missense_Mutation p.R2153G 0.21 deleterious(0.01) possibly_damaging(0.885) TCGA-DK-AA75-01 12 2692024 2692024 G A CACNA1C Missense_Mutation p.D714N 0.48 tolerated(0.31) benign(0.295) TCGA-DK-AA75-01 12 29604385 29604385 C T OVCH1 Missense_Mutation p.S883N 0.31 deleterious(0.04) benign(0.354) TCGA-DK-AA75-01 12 32908711 32908711 G A YARS2 Missense_Mutation p.S33L 0.20 tolerated(0.36) benign(0.024) TCGA-DK-AA75-01 12 39726900 39726900 G C KIF21A Missense_Mutation p.L833V 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-DK-AA75-01 12 40728861 40728861 C T LRRK2 Silent p.A1950A 0.09 TCGA-DK-AA75-01 12 46125033 46125033 G A ARID2 Missense_Mutation p.E74K 0.11 deleterious(0.04) probably_damaging(0.965) TCGA-DK-AA75-01 12 46321292 46321292 G C SCAF11 Missense_Mutation p.S731C 0.24 deleterious(0.05) benign(0.086) TCGA-DK-AA75-01 12 46764346 46764346 C T SLC38A2 Missense_Mutation p.G88E 0.38 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 12 48179640 48179640 C T HDAC7 Missense_Mutation p.M867I 0.62 deleterious(0) probably_damaging(0.983) TCGA-DK-AA75-01 12 48190870 48190870 C T HDAC7 Silent p.R211R 0.47 TCGA-DK-AA75-01 12 49361757 49361757 C T WNT10B Missense_Mutation p.R228Q 0.27 tolerated(0.11) possibly_damaging(0.738) TCGA-DK-AA75-01 12 51467833 51467833 G A CSRNP2 Missense_Mutation p.R62W 0.22 deleterious(0) probably_damaging(0.989) TCGA-DK-AA75-01 12 53164803 53164803 C A KRT76 Silent p.L488L 0.09 TCGA-DK-AA75-01 12 53586225 53586225 T C ITGB7 Missense_Mutation p.I682V 0.05 tolerated(1) benign(0) TCGA-DK-AA75-01 12 53607344 53607344 G A RARG Silent p.L318L 0.07 TCGA-DK-AA75-01 12 56495938 56495938 C T ERBB3 3'UTR 0.19 TCGA-DK-AA75-01 12 56637093 56637093 G A ANKRD52 Missense_Mutation p.P1022S 0.53 tolerated(1) benign(0.011) TCGA-DK-AA75-01 12 58111707 58111707 G A OS9 Missense_Mutation p.R367Q 0.27 tolerated(0.26) benign(0.024) TCGA-DK-AA75-01 12 58160767 58160767 C T CYP27B1 Missense_Mutation p.E20K 0.33 tolerated(0.14) benign(0.006) TCGA-DK-AA75-01 12 58217444 58217444 C T CTDSP2 Missense_Mutation p.E253K 0.40 deleterious(0) probably_damaging(0.986) TCGA-DK-AA75-01 12 70928367 70928367 C G PTPRB Missense_Mutation p.G2090A 0.09 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 12 71918201 71918201 C T LGR5 Silent p.N100N 0.13 TCGA-DK-AA75-01 12 78400290 78400290 T G NAV3 Silent p.P324P 0.11 TCGA-DK-AA75-01 12 8988246 8988246 C T A2ML1 Silent p.F209F 0.19 TCGA-DK-AA75-01 12 99192766 99192766 C G ANKS1B Silent p.L1071L 0.12 TCGA-DK-AA75-01 13 114541062 114541062 G A GAS6 Missense_Mutation p.S190F 0.49 deleterious(0.03) benign(0.371) TCGA-DK-AA75-01 13 23912230 23912230 G A SACS Missense_Mutation p.R1929W 0.27 probably_damaging(0.997) TCGA-DK-AA75-01 13 24844946 24844946 C T SPATA13 Intron 0.93 TCGA-DK-AA75-01 13 24895489 24895489 G A AL359736.1 Silent p.V26V 0.27 TCGA-DK-AA75-01 13 40239281 40239281 C T COG6 Nonsense_Mutation p.Q140* 0.39 TCGA-DK-AA75-01 13 52682499 52682499 T A NEK5 Missense_Mutation p.Y170F 0.82 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 13 88329946 88329946 G A SLITRK5 Missense_Mutation p.R768Q 0.77 deleterious(0.02) possibly_damaging(0.801) TCGA-DK-AA75-01 13 96261723 96261723 G A DZIP1 Missense_Mutation p.P470S 0.67 tolerated(0.16) probably_damaging(0.998) TCGA-DK-AA75-01 14 101350751 101350751 T C RTL1 Silent p.S125S 0.24 TCGA-DK-AA75-01 14 101448375 101448375 G T SNORD114-21 RNA 0.10 TCGA-DK-AA75-01 14 103395119 103395119 C T AMN Missense_Mutation p.S107F 0.21 deleterious(0) possibly_damaging(0.563) TCGA-DK-AA75-01 14 105360912 105360912 G A CEP170B Silent p.Q1468Q 0.63 TCGA-DK-AA75-01 14 106091126 106091126 C G IGHG4 Missense_Mutation p.R224P 0.17 deleterious(0.01) benign(0.11) TCGA-DK-AA75-01 14 107095422 107095422 G C IGHV4-61 Missense_Mutation p.Q20E 0.28 tolerated(0.12) benign(0.068) TCGA-DK-AA75-01 14 23548069 23548069 G A ACIN1 Missense_Mutation p.S714L 0.21 benign(0.001) TCGA-DK-AA75-01 14 35182578 35182578 C G CFL2 Missense_Mutation p.E65Q 0.26 tolerated(0.16) benign(0.019) TCGA-DK-AA75-01 14 52187055 52187055 C G FRMD6 Nonsense_Mutation p.S436* 0.27 TCGA-DK-AA75-01 14 60925418 60925418 C T C14orf39 Missense_Mutation p.R386K 0.58 tolerated(0.93) possibly_damaging(0.567) TCGA-DK-AA75-01 14 64953632 64953632 G C ZBTB25 3'UTR 0.31 TCGA-DK-AA75-01 14 69369207 69369207 G C ACTN1 Missense_Mutation p.S250C 0.22 deleterious(0.02) benign(0.149) TCGA-DK-AA75-01 14 94912904 94912904 C T SERPINA11 Silent p.Q227Q 0.29 TCGA-DK-AA75-01 15 101938652 101938652 G A PCSK6 Missense_Mutation p.P317L 0.24 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 15 25312940 25312940 G A SNORD116-7 RNA 0.30 TCGA-DK-AA75-01 15 25981237 25981237 G A ATP10A Missense_Mutation p.P236S 0.34 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 15 29993769 29993769 C T TJP1 3'UTR 0.37 TCGA-DK-AA75-01 15 30926472 30926472 C T ARHGAP11B Missense_Mutation p.L133F 0.19 tolerated(0.23) benign(0.074) TCGA-DK-AA75-01 15 34549913 34549913 C T SLC12A6 Missense_Mutation p.R207H 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 15 34634196 34634196 C T NOP10 Missense_Mutation p.M56I 0.38 tolerated(0.49) benign(0.002) TCGA-DK-AA75-01 15 40265857 40265857 C T EIF2AK4 Silent p.F575F 0.47 TCGA-DK-AA75-01 15 40505659 40505659 C T BUB1B Silent p.L888L 0.12 TCGA-DK-AA75-01 15 41289748 41289748 G A INO80 Silent p.I1183I 0.64 TCGA-DK-AA75-01 15 41853503 41853503 C T TYRO3 Silent p.F101F 0.54 TCGA-DK-AA75-01 15 41870542 41870542 C T TYRO3 3'UTR 0.47 TCGA-DK-AA75-01 15 42170706 42170706 G A SPTBN5 Nonsense_Mutation p.Q1102* 0.12 TCGA-DK-AA75-01 15 42694989 42694989 C T CAPN3 Intron 0.47 TCGA-DK-AA75-01 15 45404910 45404910 C T DUOX2 Missense_Mutation p.R56Q 0.33 tolerated(0.13) benign(0.046) TCGA-DK-AA75-01 15 49659663 49659663 G A FAM227B Missense_Mutation p.T418I 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA75-01 15 52505468 52505468 G T MYO5C Nonsense_Mutation p.S1353* 0.32 TCGA-DK-AA75-01 15 52515785 52515785 C T MYO5C Missense_Mutation p.E1195K 0.59 tolerated(0.28) benign(0.184) TCGA-DK-AA75-01 15 55527103 55527103 G A RAB27A Silent p.I10I 0.32 TCGA-DK-AA75-01 15 55652856 55652856 C T CCPG1 Missense_Mutation p.R372K 0.26 tolerated(0.88) benign(0.011) TCGA-DK-AA75-01 15 58903248 58903248 G A ADAM10 Missense_Mutation p.S585F 0.47 deleterious(0.04) benign(0.017) TCGA-DK-AA75-01 15 63551823 63551823 C T RAB8B Intron 0.57 TCGA-DK-AA75-01 15 65157389 65157389 G A PLEKHO2 Missense_Mutation p.E259K 0.38 tolerated(0.84) benign(0.002) TCGA-DK-AA75-01 15 65370401 65370401 C T KBTBD13 Silent p.I416I 0.43 TCGA-DK-AA75-01 15 68126152 68126152 T G SKOR1 Missense_Mutation p.F862C 0.29 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-DK-AA75-01 15 71256165 71256165 C T LRRC49 Missense_Mutation p.S277L 0.27 deleterious(0.03) benign(0.059) TCGA-DK-AA75-01 15 75185571 75185571 C T MPI Silent p.L194L 0.23 TCGA-DK-AA75-01 15 78474375 78474375 T C ACSBG1 Missense_Mutation p.Y336C 0.51 tolerated(0.11) probably_damaging(0.949) TCGA-DK-AA75-01 15 81428993 81428993 T C C15orf26 Missense_Mutation p.I99T 0.27 tolerated(0.22) benign(0.009) TCGA-DK-AA75-01 15 85401044 85401044 G A ALPK3 Silent p.Q1227Q 0.24 TCGA-DK-AA75-01 15 89804819 89804819 C T FANCI Missense_Mutation p.H98Y 0.09 deleterious(0.04) benign(0.205) TCGA-DK-AA75-01 15 89807248 89807248 C G FANCI Silent p.L220L 0.18 TCGA-DK-AA75-01 16 11931640 11931640 G A RSL1D1 3'UTR 0.32 TCGA-DK-AA75-01 16 1400929 1400929 C T TSR3 Silent p.G135G 0.71 TCGA-DK-AA75-01 16 19126041 19126041 C G ITPRIPL2 Silent p.A86A 0.41 TCGA-DK-AA75-01 16 21042571 21042571 G A DNAH3 Silent p.I1745I 0.18 TCGA-DK-AA75-01 16 2285495 2285495 C - E4F1 Frame_Shift_Del p.I759Mfs*54 0.80 TCGA-DK-AA75-01 16 28500624 28500624 C T CLN3 Missense_Mutation p.G70E 0.29 tolerated(0.15) benign(0.026) TCGA-DK-AA75-01 16 29974456 29974456 C T TMEM219 5'UTR 0.23 TCGA-DK-AA75-01 16 30594000 30594000 C T ZNF785 Missense_Mutation p.E367K 0.16 tolerated(0.87) benign(0) TCGA-DK-AA75-01 16 3074262 3074262 C T THOC6 5'UTR 0.40 TCGA-DK-AA75-01 16 3306483 3306485 CTT - MEFV In_Frame_Del p.K35del 0.15 TCGA-DK-AA75-01 16 3406138 3406138 C G OR2C1 Silent p.L66L 0.29 TCGA-DK-AA75-01 16 4834045 4834045 G C SEPT12 Missense_Mutation p.I133M 0.11 deleterious(0) probably_damaging(0.978) TCGA-DK-AA75-01 16 48399431 48399431 G C SIAH1 5'UTR 0.57 TCGA-DK-AA75-01 16 49671467 49671467 G C ZNF423 Silent p.L532L 0.22 TCGA-DK-AA75-01 16 55364339 55364339 A C IRX6 3'UTR 0.32 TCGA-DK-AA75-01 16 569852 569852 G A RAB11FIP3 Silent p.E607E 0.56 TCGA-DK-AA75-01 16 57111918 57111918 C A NLRC5 Missense_Mutation p.H1689Q 0.55 tolerated(0.27) benign(0.009) TCGA-DK-AA75-01 16 66997079 66997079 C G CES3 Intron 0.19 TCGA-DK-AA75-01 16 67034809 67034809 C T CES4A Missense_Mutation p.S151L 0.27 deleterious(0.03) benign(0.046) TCGA-DK-AA75-01 16 67681504 67681504 A T RLTPR Silent p.R290R 0.33 TCGA-DK-AA75-01 16 67685308 67685309 - C RLTPR Frame_Shift_Ins p.I775Hfs*4 0.29 TCGA-DK-AA75-01 16 70016293 70016293 G A PDXDC2P RNA 0.10 TCGA-DK-AA75-01 16 70161220 70161220 G A PDPR Silent p.L95L 0.12 TCGA-DK-AA75-01 16 71482893 71482893 G A ZNF23 Silent p.F345F 0.29 TCGA-DK-AA75-01 16 76486570 76486570 C T CNTNAP4 Nonsense_Mutation p.Q340* 0.10 TCGA-DK-AA75-01 16 77465225 77465225 G A ADAMTS18 Silent p.S154S 0.11 TCGA-DK-AA75-01 16 81241216 81241216 T G PKD1L2 Missense_Mutation p.E262A 0.39 tolerated(0.51) possibly_damaging(0.641) TCGA-DK-AA75-01 16 84108235 84108235 G A MBTPS1 Silent p.N520N 0.52 TCGA-DK-AA75-01 16 90109651 90109651 C T GAS8 Silent p.F445F 0.60 TCGA-DK-AA75-01 17 11583103 11583103 A G DNAH9 Missense_Mutation p.K1128R 0.28 benign(0.002) TCGA-DK-AA75-01 17 19091342 19091342 C T SNORD3A RNA 0.28 TCGA-DK-AA75-01 17 19187004 19187004 G A EPN2 Missense_Mutation p.G191D 0.32 deleterious(0) probably_damaging(0.946) TCGA-DK-AA75-01 17 20407203 20407203 C G RP11-434D2.7 3'Flank 0.10 TCGA-DK-AA75-01 17 28656333 28656333 G C TMIGD1 Missense_Mutation p.I99M 0.27 deleterious(0) possibly_damaging(0.715) TCGA-DK-AA75-01 17 29123185 29123185 C G CRLF3 Missense_Mutation p.W199S 0.51 deleterious(0) possibly_damaging(0.899) TCGA-DK-AA75-01 17 29187576 29187576 G T ATAD5 Nonsense_Mutation p.E1028* 0.37 TCGA-DK-AA75-01 17 29848181 29848181 C T RAB11FIP4 Intron 0.28 TCGA-DK-AA75-01 17 35545337 35545337 G A ACACA Silent p.I1552I 0.45 TCGA-DK-AA75-01 17 37343123 37343123 G A CACNB1 Silent p.F158F 0.41 TCGA-DK-AA75-01 17 3769223 3769223 G A CAMKK1 Missense_Mutation p.S513F 0.38 deleterious(0) probably_damaging(0.994) TCGA-DK-AA75-01 17 38638573 38638573 C T TNS4 Intron 0.36 TCGA-DK-AA75-01 17 39036071 39036071 G A KRT20 Silent p.L304L 0.36 TCGA-DK-AA75-01 17 39884450 39884450 C T HAP1 Intron 0.17 TCGA-DK-AA75-01 17 40950665 40950665 G A COA3 Missense_Mutation p.S12F 0.19 tolerated_low_confidence(0.09) possibly_damaging(0.463) TCGA-DK-AA75-01 17 41003700 41003700 G A AOC3 Missense_Mutation p.D114N 0.28 deleterious(0.03) probably_damaging(0.957) TCGA-DK-AA75-01 17 42744034 42744034 C A C17orf104 Missense_Mutation p.T252K 0.44 deleterious(0.02) possibly_damaging(0.474) TCGA-DK-AA75-01 17 47899081 47899081 G A KAT7 Missense_Mutation p.E439K 0.60 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 17 48072263 48072263 C T DLX3 Missense_Mutation p.E34K 0.33 tolerated(0.11) possibly_damaging(0.881) TCGA-DK-AA75-01 17 56276500 56276500 C T EPX Missense_Mutation p.P407L 0.50 deleterious(0) probably_damaging(0.972) TCGA-DK-AA75-01 17 60059808 60059808 C T MED13 Missense_Mutation p.D1186N 0.42 tolerated(0.2) probably_damaging(0.998) TCGA-DK-AA75-01 17 65908875 65908875 C T BPTF Silent p.V1625V 0.18 TCGA-DK-AA75-01 17 73096140 73096140 G A SLC16A5 Missense_Mutation p.V128M 0.32 tolerated(0.89) possibly_damaging(0.457) TCGA-DK-AA75-01 17 73944430 73944430 G A ACOX1 Nonsense_Mutation p.Q613* 0.41 TCGA-DK-AA75-01 17 73974761 73974761 C T ACOX1 Silent p.L41L 0.24 TCGA-DK-AA75-01 17 76993705 76993705 C T CANT1 5'UTR 0.19 TCGA-DK-AA75-01 18 12680761 12680761 C G CEP76 Missense_Mutation p.V397L 0.13 deleterious(0.01) possibly_damaging(0.662) TCGA-DK-AA75-01 18 21437843 21437843 G A LAMA3 Missense_Mutation p.R1391Q 0.66 benign(0.055) TCGA-DK-AA75-01 18 21479384 21479384 G A LAMA3 Missense_Mutation p.R1990K 0.41 benign(0.013) TCGA-DK-AA75-01 18 21508658 21508658 G A LAMA3 Missense_Mutation p.D2789N 0.15 benign(0.001) TCGA-DK-AA75-01 18 30791990 30791990 C G CCDC178 Missense_Mutation p.R703T 0.19 tolerated(0.13) benign(0.108) TCGA-DK-AA75-01 18 30795535 30795535 T A CCDC178 Missense_Mutation p.D686V 0.27 tolerated(0.07) benign(0.038) TCGA-DK-AA75-01 18 59958847 59958847 C G KIAA1468 Missense_Mutation p.L1148V 0.20 tolerated(0.35) benign(0.009) TCGA-DK-AA75-01 18 7007212 7007212 G A LAMA1 Silent p.L1396L 0.17 TCGA-DK-AA75-01 18 71816166 71816166 G A TIMM21 Silent p.L41L 0.52 TCGA-DK-AA75-01 18 74153881 74153881 G A ZNF516 Missense_Mutation p.S377L 0.19 tolerated(0.29) benign(0) TCGA-DK-AA75-01 19 11456024 11456024 G A TMEM205 Silent p.F56F 0.32 TCGA-DK-AA75-01 19 12430291 12430291 T A ZNF563 Missense_Mutation p.N183I 0.26 deleterious(0.02) benign(0.219) TCGA-DK-AA75-01 19 14094364 14094364 G C RFX1 Silent p.P121P 0.38 TCGA-DK-AA75-01 19 14208666 14208666 G C PRKACA Silent p.V152V 0.20 TCGA-DK-AA75-01 19 16178467 16178467 G A TPM4 Silent p.L11L 0.30 TCGA-DK-AA75-01 19 17741475 17741475 G T UNC13A Missense_Mutation p.D1171E 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-DK-AA75-01 19 17892626 17892626 C T FCHO1 Missense_Mutation p.P645L 0.25 tolerated(0.08) benign(0.144) TCGA-DK-AA75-01 19 17922739 17922739 G T B3GNT3 Silent p.L309L 0.28 TCGA-DK-AA75-01 19 19626177 19626177 C G TSSK6 Missense_Mutation p.E20D 0.28 deleterious(0.03) possibly_damaging(0.63) TCGA-DK-AA75-01 19 23406219 23406219 A G ZNF724P Silent p.H276H 0.18 TCGA-DK-AA75-01 19 29698896 29698896 A G UQCRFS1 Silent p.A128A 0.10 TCGA-DK-AA75-01 19 33465092 33465092 G A C19orf40 Missense_Mutation p.E124K 0.21 deleterious(0) probably_damaging(0.994) TCGA-DK-AA75-01 19 36229402 36229402 A T KMT2B Missense_Mutation p.S2698C 0.09 benign(0.181) TCGA-DK-AA75-01 19 37903424 37903424 A T ZNF569 3'UTR 0.44 TCGA-DK-AA75-01 19 39127564 39127564 C T EIF3K 3'UTR 0.39 TCGA-DK-AA75-01 19 40318964 40318964 G C DYRK1B Missense_Mutation p.F260L 0.14 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 19 40715113 40715113 G A MAP3K10 Silent p.L513L 0.43 TCGA-DK-AA75-01 19 40971569 40971569 G A BLVRB Silent p.F9F 0.34 TCGA-DK-AA75-01 19 41903212 41903212 C A EXOSC5 Missense_Mutation p.D8Y 0.37 deleterious_low_confidence(0.02) benign(0.224) TCGA-DK-AA75-01 19 43031533 43031533 C T CEACAM1 Nonsense_Mutation p.W28* 0.14 TCGA-DK-AA75-01 19 43359801 43359801 T C PSG10P 5'Flank 0.13 TCGA-DK-AA75-01 19 44792604 44792604 G A ZNF235 Silent p.F328F 0.43 TCGA-DK-AA75-01 19 44936521 44936521 G A ZNF229 Silent p.D38D 0.05 TCGA-DK-AA75-01 19 45872195 45872195 A G ERCC2 Missense_Mutation p.I80T 0.40 deleterious(0) possibly_damaging(0.816) TCGA-DK-AA75-01 19 46124554 46124554 C T EML2 Missense_Mutation p.E546K 0.32 deleterious(0.01) benign(0.034) TCGA-DK-AA75-01 19 46404965 46404965 C T MYPOP Missense_Mutation p.E23K 0.58 deleterious(0) possibly_damaging(0.496) TCGA-DK-AA75-01 19 46998637 46998637 C T PNMAL2 Missense_Mutation p.G29D 0.38 tolerated(0.78) benign(0.028) TCGA-DK-AA75-01 19 49224177 49224177 G A RASIP1 Missense_Mutation p.P924S 0.28 tolerated(0.05) benign(0.162) TCGA-DK-AA75-01 19 49379294 49379294 G A PPP1R15A 3'UTR 0.67 TCGA-DK-AA75-01 19 49575335 49575335 C T KCNA7 Missense_Mutation p.D170N 0.21 tolerated(0.11) benign(0.001) TCGA-DK-AA75-01 19 49575432 49575432 C G KCNA7 Missense_Mutation p.E137D 0.11 tolerated(0.24) benign(0) TCGA-DK-AA75-01 19 50831719 50831719 G A KCNC3 Silent p.P207P 0.50 TCGA-DK-AA75-01 19 53056704 53056704 C T ZNF808 Nonsense_Mutation p.Q179* 0.22 TCGA-DK-AA75-01 19 53057481 53057481 C G ZNF808 Missense_Mutation p.Q438E 0.16 tolerated(0.27) benign(0.193) TCGA-DK-AA75-01 19 54666464 54666464 G A TMC4 Silent p.L488L 0.41 TCGA-DK-AA75-01 19 55450851 55450851 G A NLRP7 Missense_Mutation p.R446C 0.26 tolerated(0.22) benign(0.029) TCGA-DK-AA75-01 19 55995051 55995051 A G ZNF628 Missense_Mutation p.T831A 0.13 tolerated(0.17) unknown(0) TCGA-DK-AA75-01 19 56103936 56103936 G C FIZ1 Silent p.L457L 0.27 TCGA-DK-AA75-01 19 57765427 57765427 C T ZNF805 Missense_Mutation p.L414F 0.38 tolerated(0.19) probably_damaging(1) TCGA-DK-AA75-01 19 58101690 58101690 G C ZIK1 Missense_Mutation p.E171Q 0.10 deleterious(0.02) benign(0.006) TCGA-DK-AA75-01 19 8618223 8618246 CCTCGTCTCACCTGGACCTTCTCG - MYO1F Splice_Site p.X134_splice 0.50 TCGA-DK-AA75-01 1 102312425 102312425 C T OLFM3 Intron 0.14 TCGA-DK-AA75-01 1 104160142 104160142 C A AMY2A Missense_Mutation p.S27Y 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-DK-AA75-01 1 10478965 10478965 G C PGD Missense_Mutation p.A398P 0.12 deleterious(0.01) possibly_damaging(0.905) TCGA-DK-AA75-01 1 108247667 108247667 C G VAV3 Missense_Mutation p.D507H 0.08 deleterious(0.01) benign(0.02) TCGA-DK-AA75-01 1 114512627 114512627 G T HIPK1 Missense_Mutation p.D941Y 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA75-01 1 117944851 117944851 G A MAN1A2 Missense_Mutation p.E116K 0.19 tolerated(0.12) benign(0.41) TCGA-DK-AA75-01 1 118642234 118642234 G A SPAG17 Missense_Mutation p.S275L 0.63 deleterious(0.05) benign(0.002) TCGA-DK-AA75-01 1 12062150 12062150 C G MFN2 Missense_Mutation p.R384G 0.22 tolerated(0.22) benign(0.038) TCGA-DK-AA75-01 1 12640692 12640692 A G DHRS3 Silent p.I66I 0.20 TCGA-DK-AA75-01 1 151509351 151509351 C G CGN Missense_Mutation p.S1151C 0.12 deleterious(0) possibly_damaging(0.754) TCGA-DK-AA75-01 1 151682264 151682264 T A CELF3 Missense_Mutation p.N78Y 0.28 tolerated(0.11) benign(0.285) TCGA-DK-AA75-01 1 151682265 151682265 C T CELF3 Missense_Mutation p.M77I 0.28 deleterious(0) benign(0.137) TCGA-DK-AA75-01 1 152080091 152080091 C T TCHH Missense_Mutation p.E1868K 0.28 benign(0.292) TCGA-DK-AA75-01 1 153916545 153916545 G A DENND4B Silent p.L102L 0.32 TCGA-DK-AA75-01 1 153941475 153941475 G A CREB3L4 Missense_Mutation p.E82K 0.07 tolerated(0.27) benign(0.354) TCGA-DK-AA75-01 1 153946367 153946367 G A CREB3L4 Silent p.L338L 0.19 TCGA-DK-AA75-01 1 155226471 155226471 C T SCAMP3 Silent p.L297L 0.16 TCGA-DK-AA75-01 1 155829561 155829561 G C SYT11 Missense_Mutation p.E3D 0.24 tolerated_low_confidence(0.38) benign(0.018) TCGA-DK-AA75-01 1 157567718 157567718 G A FCRL4 Missense_Mutation p.S6F 0.26 deleterious(0.04) benign(0.003) TCGA-DK-AA75-01 1 158300752 158300752 C T CD1B Silent p.Q54Q 0.21 TCGA-DK-AA75-01 1 159043056 159043056 T C AIM2 Silent p.A78A 0.11 TCGA-DK-AA75-01 1 161017447 161017447 G A ARHGAP30 3'UTR 0.09 TCGA-DK-AA75-01 1 16736161 16736161 C G SPATA21 Silent p.L174L 0.80 TCGA-DK-AA75-01 1 167778995 167778995 C T ADCY10 Missense_Mutation p.V1585I 0.72 tolerated(0.16) benign(0.006) TCGA-DK-AA75-01 1 171168542 171168542 G C FMO2 Missense_Mutation p.G181A 0.04 tolerated(0.91) benign(0.314) TCGA-DK-AA75-01 1 171509877 171509877 C T PRRC2C Missense_Mutation p.S1089L 0.62 unknown(0) TCGA-DK-AA75-01 1 173570901 173570901 G T SLC9C2 Missense_Mutation p.F5L 0.07 deleterious_low_confidence(0.04) benign(0.071) TCGA-DK-AA75-01 1 175067637 175067637 G A TNN Silent p.L675L 0.71 TCGA-DK-AA75-01 1 17555289 17555289 G T PADI1 Silent p.P274P 0.11 TCGA-DK-AA75-01 1 179520419 179520419 C T NPHS2 Silent p.L347L 0.72 TCGA-DK-AA75-01 1 17965155 17965155 C G ARHGEF10L Silent p.L714L 0.11 TCGA-DK-AA75-01 1 17975110 17975110 C T ARHGEF10L Silent p.F778F 0.15 TCGA-DK-AA75-01 1 17981180 17981180 C G ARHGEF10L Nonsense_Mutation p.S815* 0.09 TCGA-DK-AA75-01 1 180199688 180199688 C T LHX4 Silent p.P8P 0.48 TCGA-DK-AA75-01 1 1849796 1849796 C G TMEM52 Missense_Mutation p.R82P 0.08 tolerated(0.05) benign(0.35) TCGA-DK-AA75-01 1 186055476 186055476 G C HMCN1 Missense_Mutation p.D2995H 0.33 probably_damaging(0.999) TCGA-DK-AA75-01 1 190067555 190067555 G T BRINP3 Missense_Mutation p.R632S 0.07 tolerated(0.08) probably_damaging(0.995) TCGA-DK-AA75-01 1 190129905 190129905 C T BRINP3 Silent p.E359E 0.10 TCGA-DK-AA75-01 1 193038398 193038398 G C TROVE2 Missense_Mutation p.E72Q 0.11 tolerated(0.1) benign(0.064) TCGA-DK-AA75-01 1 196952176 196952176 G A CFHR5 Missense_Mutation p.E74K 0.63 tolerated(0.21) possibly_damaging(0.777) TCGA-DK-AA75-01 1 197115395 197115395 C T ASPM Missense_Mutation p.G58E 0.75 deleterious(0) benign(0.263) TCGA-DK-AA75-01 1 197298072 197298072 C T CRB1 Silent p.N197N 0.10 TCGA-DK-AA75-01 1 201981177 201981177 G A ELF3 Missense_Mutation p.D86N 0.37 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 1 204380620 204380620 G A PPP1R15B 5'UTR 0.17 TCGA-DK-AA75-01 1 204413530 204413530 G A PIK3C2B Missense_Mutation p.R901C 0.45 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 1 205589786 205589786 G A ELK4 Nonsense_Mutation p.Q130* 0.58 TCGA-DK-AA75-01 1 208252607 208252607 C T PLXNA2 Missense_Mutation p.E862K 0.28 tolerated(1) benign(0.196) TCGA-DK-AA75-01 1 216108115 216108115 C T USH2A Silent p.L2381L 0.34 TCGA-DK-AA75-01 1 218458681 218458681 C G RRP15 Nonsense_Mutation p.S8* 0.22 TCGA-DK-AA75-01 1 220160661 220160661 G A EPRS Missense_Mutation p.S954L 0.20 deleterious(0.05) benign(0.009) TCGA-DK-AA75-01 1 220330660 220330660 C T RAB3GAP2 Missense_Mutation p.M1169I 0.39 deleterious(0.03) benign(0.272) TCGA-DK-AA75-01 1 220344286 220344286 C G RAB3GAP2 Missense_Mutation p.Q918H 0.18 tolerated(0.24) possibly_damaging(0.601) TCGA-DK-AA75-01 1 226784666 226784666 C G C1orf95 Missense_Mutation p.D122E 0.22 deleterious(0.01) possibly_damaging(0.448) TCGA-DK-AA75-01 1 226923271 226923271 T C ITPKB Missense_Mutation p.N630S 0.39 tolerated(0.21) benign(0.042) TCGA-DK-AA75-01 1 227198725 227198725 G A CDC42BPA Intron 0.27 TCGA-DK-AA75-01 1 22835057 22835057 C T ZBTB40 Missense_Mutation p.S511L 0.24 deleterious(0.02) unknown(0) TCGA-DK-AA75-01 1 22903359 22903359 G A EPHA8 Missense_Mutation p.R270Q 0.16 tolerated(0.35) benign(0.011) TCGA-DK-AA75-01 1 232941715 232941715 G A MAP10 Missense_Mutation p.D316N 0.26 deleterious(0.01) possibly_damaging(0.884) TCGA-DK-AA75-01 1 236883473 236883473 C T ACTN2 Nonsense_Mutation p.Q144* 0.18 TCGA-DK-AA75-01 1 240494020 240494020 C G FMN2 Missense_Mutation p.L1519V 0.17 probably_damaging(0.999) TCGA-DK-AA75-01 1 244541775 244541775 C A C1orf100 Silent p.L53L 0.16 TCGA-DK-AA75-01 1 246811167 246811167 G A CNST Missense_Mutation p.C555Y 0.45 tolerated(0.06) probably_damaging(0.982) TCGA-DK-AA75-01 1 26448637 26448637 G A PDIK1L Missense_Mutation p.A199T 0.07 tolerated(0.14) benign(0.008) TCGA-DK-AA75-01 1 26497082 26497094 GTCGAGCCCTACA - ZNF593 Frame_Shift_Del p.E95Rfs*40 0.33 TCGA-DK-AA75-01 1 26646662 26646662 A G CD52 Missense_Mutation p.I19V 0.41 deleterious_low_confidence(0) benign(0.068) TCGA-DK-AA75-01 1 32671885 32671885 G A IQCC Missense_Mutation p.R138Q 0.60 tolerated(0.76) benign(0.061) TCGA-DK-AA75-01 1 33957061 33957061 C T ZSCAN20 Silent p.F401F 0.32 TCGA-DK-AA75-01 1 35921661 35921661 C G KIAA0319L Missense_Mutation p.E537Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 1 38185674 38185674 G A EPHA10 Silent p.F823F 0.10 TCGA-DK-AA75-01 1 41494360 41494360 G A SCMH1 Silent p.L585L 0.67 TCGA-DK-AA75-01 1 41946857 41946857 C T EDN2 Missense_Mutation p.A118T 0.22 tolerated(0.25) benign(0.015) TCGA-DK-AA75-01 1 47834186 47834186 G A CMPK1 Missense_Mutation p.E73K 0.51 deleterious(0) probably_damaging(0.979) TCGA-DK-AA75-01 1 52705015 52705015 C T ZFYVE9 Silent p.V642V 0.42 TCGA-DK-AA75-01 1 53236774 53236774 C G ZYG11B Missense_Mutation p.I93M 0.41 deleterious(0.03) probably_damaging(0.996) TCGA-DK-AA75-01 1 53237265 53237265 G C ZYG11B Missense_Mutation p.R257P 0.20 deleterious(0.04) possibly_damaging(0.619) TCGA-DK-AA75-01 1 53362131 53362131 C A ECHDC2 3'UTR 0.36 TCGA-DK-AA75-01 1 53513540 53513540 T G SCP2 Silent p.A493A 0.57 TCGA-DK-AA75-01 1 6208929 6208929 G A CHD5 Silent p.L456L 0.51 TCGA-DK-AA75-01 1 62190813 62190813 C T TM2D1 Missense_Mutation p.E56K 0.42 tolerated_low_confidence(0.13) benign(0) TCGA-DK-AA75-01 1 67861629 67861629 G A IL12RB2 Missense_Mutation p.A816T 0.16 tolerated(1) benign(0) TCGA-DK-AA75-01 1 71512496 71512496 G C PTGER3 Silent p.A255A 0.26 TCGA-DK-AA75-01 1 78163129 78163129 G A USP33 Missense_Mutation p.T901I 0.08 tolerated(0.12) probably_damaging(0.999) TCGA-DK-AA75-01 1 78381767 78381767 C T NEXN 5'UTR 0.39 TCGA-DK-AA75-01 1 86048116 86048116 C T CYR61 Missense_Mutation p.R218C 0.18 deleterious(0.05) benign(0.28) TCGA-DK-AA75-01 1 89650902 89650902 C T GBP4 3'UTR 0.60 TCGA-DK-AA75-01 1 905726 905727 - GG PLEKHN1 Frame_Shift_Ins p.R86Gfs*6 0.23 TCGA-DK-AA75-01 1 91405315 91405315 G A ZNF644 Silent p.F532F 0.32 TCGA-DK-AA75-01 1 94048275 94048275 G A BCAR3 Silent p.L423L 0.62 TCGA-DK-AA75-01 1 9782404 9782404 G C PIK3CD Missense_Mutation p.K779N 0.12 deleterious(0) possibly_damaging(0.864) TCGA-DK-AA75-01 20 20016868 20016868 C G CRNKL1 Missense_Mutation p.D840H 0.16 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-DK-AA75-01 20 30309730 30309730 C T BCL2L1 Missense_Mutation p.E98K 0.14 deleterious(0) possibly_damaging(0.534) TCGA-DK-AA75-01 20 30538146 30538146 C T PDRG1 Silent p.L44L 0.23 TCGA-DK-AA75-01 20 31958311 31958311 C T CDK5RAP1 Missense_Mutation p.M462I 0.30 deleterious(0.02) benign(0.168) TCGA-DK-AA75-01 20 34025306 34025306 G A GDF5 Missense_Mutation p.P135S 0.49 tolerated(1) benign(0.001) TCGA-DK-AA75-01 20 34208866 34208866 C T SPAG4 Silent p.F412F 0.25 TCGA-DK-AA75-01 20 35128659 35128659 G A DLGAP4 Silent p.Q716Q 0.29 TCGA-DK-AA75-01 20 39316747 39316747 G C MAFB Missense_Mutation p.N248K 0.10 deleterious(0) probably_damaging(0.988) TCGA-DK-AA75-01 20 39798876 39798876 G A PLCG1 Silent p.K925K 0.24 TCGA-DK-AA75-01 20 43571819 43571819 G C TOMM34 Silent p.L287L 0.14 TCGA-DK-AA75-01 20 43836925 43836925 G A SEMG1 Silent p.Q329Q 0.23 TCGA-DK-AA75-01 20 45947812 45947812 G A AL031666.2 Missense_Mutation p.G150R 0.45 unknown(0) TCGA-DK-AA75-01 20 46254175 46254175 A G NCOA3 Missense_Mutation p.T103A 0.29 deleterious(0.04) probably_damaging(0.989) TCGA-DK-AA75-01 20 47868155 47868155 C T ZNFX1 Missense_Mutation p.R1074H 0.08 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 20 48467329 48467329 G A SLC9A8 Missense_Mutation p.V189M 0.45 deleterious_low_confidence(0.02) benign(0.017) TCGA-DK-AA75-01 20 60499397 60499397 C G CDH4 Nonsense_Mutation p.S545* 0.10 TCGA-DK-AA75-01 20 62714779 62714779 C T C20orf201 Missense_Mutation p.E228K 0.32 tolerated_low_confidence(0.95) benign(0.001) TCGA-DK-AA75-01 21 11029708 11029708 T A BAGE2 RNA 0.04 TCGA-DK-AA75-01 21 16338329 16338329 C T NRIP1 Missense_Mutation p.E729K 0.64 tolerated(0.15) benign(0.321) TCGA-DK-AA75-01 21 35169762 35169762 G A ITSN1 Missense_Mutation p.E678K 0.31 tolerated(0.08) benign(0.069) TCGA-DK-AA75-01 21 36228727 36228727 G A RUNX1 Intron 0.27 TCGA-DK-AA75-01 21 37833388 37833388 C T CLDN14 Silent p.T202T 0.28 TCGA-DK-AA75-01 21 43621831 43621831 C T ABCG1 Nonsense_Mutation p.Q16* 0.34 TCGA-DK-AA75-01 21 46086429 46086429 G T KRTAP12-2 Nonsense_Mutation p.C125* 0.25 TCGA-DK-AA75-01 21 46950821 46950821 G A SLC19A1 Silent p.L338L 0.65 TCGA-DK-AA75-01 22 18918670 18918670 G A PRODH Silent p.F105F 0.26 TCGA-DK-AA75-01 22 24129346 24129346 C T SMARCB1 5'UTR 0.45 TCGA-DK-AA75-01 22 29140641 29140641 G A HSCB Silent p.V124V 0.29 TCGA-DK-AA75-01 22 29446217 29446217 C T ZNRF3 Missense_Mutation p.S683L 0.49 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-DK-AA75-01 22 30742444 30742444 G C SF3A1 Missense_Mutation p.L84V 0.46 deleterious(0) probably_damaging(0.973) TCGA-DK-AA75-01 22 31003328 31003328 C A TCN2 Missense_Mutation p.L4I 0.25 deleterious(0.05) probably_damaging(0.973) TCGA-DK-AA75-01 22 31285623 31285623 G A OSBP2 Silent p.P541P 0.35 TCGA-DK-AA75-01 22 32808213 32808213 C T RTCB 5'UTR 0.36 TCGA-DK-AA75-01 22 38323811 38323811 C T MICALL1 Missense_Mutation p.S620L 0.29 tolerated(0.21) benign(0.005) TCGA-DK-AA75-01 22 38341118 38341118 C T C22orf23 Missense_Mutation p.E138K 0.46 tolerated(0.07) benign(0.05) TCGA-DK-AA75-01 22 38890650 38890650 C G DDX17 Missense_Mutation p.S400T 0.12 tolerated(0.39) benign(0.039) TCGA-DK-AA75-01 22 40161511 40161511 G C ENTHD1 Silent p.L312L 0.22 TCGA-DK-AA75-01 22 42322147 42322147 G A TNFRSF13C Missense_Mutation p.R109C 0.64 tolerated(0.12) benign(0.197) TCGA-DK-AA75-01 22 46859643 46859643 C T CELSR1 Missense_Mutation p.E1382K 0.23 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 22 50169371 50169371 C A BRD1 Missense_Mutation p.R954L 0.54 deleterious(0.02) benign(0.167) TCGA-DK-AA75-01 22 50660232 50660232 C T TUBGCP6 Silent p.S852S 0.32 TCGA-DK-AA75-01 2 100170935 100170935 G A AFF3 Nonsense_Mutation p.Q1158* 0.42 TCGA-DK-AA75-01 2 101598812 101598812 C T NPAS2 Silent p.L534L 0.13 TCGA-DK-AA75-01 2 102836357 102836357 C T IL1RL2 Missense_Mutation p.R291W 0.17 deleterious(0.01) benign(0.394) TCGA-DK-AA75-01 2 106509608 106509608 C G NCK2 Silent p.L373L 0.33 TCGA-DK-AA75-01 2 109294465 109294465 C T LIMS1 Missense_Mutation p.R319C 0.58 tolerated(0.09) benign(0.298) TCGA-DK-AA75-01 2 109300445 109300445 G A LIMS1 Missense_Mutation p.G385E 0.13 tolerated(1) unknown(0) TCGA-DK-AA75-01 2 111416076 111416076 T C BUB1 Missense_Mutation p.Q476R 0.24 deleterious(0) probably_damaging(0.993) TCGA-DK-AA75-01 2 136511779 136511779 C G UBXN4 Missense_Mutation p.P89A 0.10 deleterious(0.01) possibly_damaging(0.782) TCGA-DK-AA75-01 2 145154063 145154063 C T ZEB2 Missense_Mutation p.E995K 0.53 deleterious(0) possibly_damaging(0.76) TCGA-DK-AA75-01 2 149227434 149227434 G A MBD5 Missense_Mutation p.R641Q 0.28 deleterious(0) benign(0.417) TCGA-DK-AA75-01 2 160750545 160750545 A T LY75-CD302 Missense_Mutation p.F173I 0.73 deleterious(0) probably_damaging(0.943) TCGA-DK-AA75-01 2 161135064 161135064 C G RBMS1 Missense_Mutation p.G353R 0.12 deleterious(0) possibly_damaging(0.88) TCGA-DK-AA75-01 2 172935695 172935695 G A METAP1D Missense_Mutation p.E201K 0.57 tolerated(0.33) benign(0.009) TCGA-DK-AA75-01 2 172951431 172951431 C T DLX1 Silent p.F121F 0.63 TCGA-DK-AA75-01 2 177135062 177135062 G A MTX2 Intron 0.63 TCGA-DK-AA75-01 2 179469870 179469870 C T TTN Missense_Mutation p.D18012N 0.08 TCGA-DK-AA75-01 2 179594937 179594937 C T TTN Missense_Mutation p.D6064N 0.35 TCGA-DK-AA75-01 2 190585486 190585486 C T ANKAR Missense_Mutation p.L870F 0.10 deleterious(0) possibly_damaging(0.88) TCGA-DK-AA75-01 2 192194747 192194747 G A MYO1B Missense_Mutation p.G113E 0.11 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 2 220432962 220432962 T C OBSL1 Missense_Mutation p.N366S 0.15 tolerated(0.89) benign(0.042) TCGA-DK-AA75-01 2 228207527 228207527 G C MFF Silent p.P195P 0.50 TCGA-DK-AA75-01 2 231988396 231988396 G A HTR2B Missense_Mutation p.S28F 0.12 tolerated_low_confidence(0.22) benign(0) TCGA-DK-AA75-01 2 232320800 232320800 C T NCL Missense_Mutation p.E585K 0.51 possibly_damaging(0.579) TCGA-DK-AA75-01 2 233407218 233407218 G T CHRNG Nonsense_Mutation p.E198* 0.41 TCGA-DK-AA75-01 2 234402151 234402151 G A USP40 Missense_Mutation p.S957L 0.83 tolerated(0.69) benign(0.005) TCGA-DK-AA75-01 2 24118748 24118748 T A ATAD2B Missense_Mutation p.K103N 0.65 tolerated_low_confidence(0.13) benign(0.036) TCGA-DK-AA75-01 2 241463379 241463379 C T ANKMY1 Silent p.L496L 0.85 TCGA-DK-AA75-01 2 24244526 24244526 C G MFSD2B Silent p.L230L 0.17 TCGA-DK-AA75-01 2 25523026 25523026 C T DNMT3A Silent p.R53R 0.34 TCGA-DK-AA75-01 2 28805334 28805334 C G PLB1 Nonsense_Mutation p.Y565* 0.65 TCGA-DK-AA75-01 2 39249906 39249906 C G SOS1 Missense_Mutation p.D555H 0.31 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 2 39536602 39536602 A G MAP4K3 Silent p.L352L 0.36 TCGA-DK-AA75-01 2 45532 45532 G A FAM110C Missense_Mutation p.S285L 0.20 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 2 48914776 48914776 C A LHCGR 3'UTR 0.36 TCGA-DK-AA75-01 2 54081110 54081110 C T GPR75 Missense_Mutation p.D262N 0.21 tolerated_low_confidence(0.19) benign(0.004) TCGA-DK-AA75-01 2 55518835 55518835 T A CCDC88A 3'UTR 0.29 TCGA-DK-AA75-01 2 68480169 68480169 G A PPP3R1 5'Flank 0.46 TCGA-DK-AA75-01 2 70314996 70314996 G A PCBP1 Missense_Mutation p.E41K 0.28 tolerated(0.09) benign(0.017) TCGA-DK-AA75-01 2 73315490 73315514 TGGCTGGCCCCAGGGGCCAGGACTT - RAB11FIP5 Frame_Shift_Del p.K411Tfs*22 0.34 TCGA-DK-AA75-01 2 73461492 73461492 G A CCT7 5'UTR 0.38 TCGA-DK-AA75-01 2 73682286 73682286 C T ALMS1 Intron 0.15 TCGA-DK-AA75-01 2 73800452 73800452 G A ALMS1 Silent p.Q3815Q 0.23 TCGA-DK-AA75-01 2 85826217 85826217 C T TMEM150A Silent p.E266E 0.25 TCGA-DK-AA75-01 2 96688851 96688851 C T GPAT2 Intron 0.33 TCGA-DK-AA75-01 3 112647919 112647919 G A CD200R1 Intron 0.09 TCGA-DK-AA75-01 3 113955031 113955031 C T ZNF80 3'UTR 0.30 TCGA-DK-AA75-01 3 122283456 122283456 G A DTX3L Silent p.R61R 0.30 TCGA-DK-AA75-01 3 128849477 128849477 C G ISY1 Silent p.S244S 0.26 TCGA-DK-AA75-01 3 130947437 130947437 G A NEK11 Missense_Mutation p.E489K 0.37 deleterious(0.04) benign(0.272) TCGA-DK-AA75-01 3 132257137 132257137 A T DNAJC13 3'UTR 0.52 TCGA-DK-AA75-01 3 132441124 132441124 C T NPHP3 Missense_Mutation p.E26K 0.88 tolerated(0.1) benign(0.027) TCGA-DK-AA75-01 3 133358956 133358956 G A TOPBP1 Missense_Mutation p.H694Y 0.29 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 3 136701146 136701146 G A IL20RB Silent p.Q120Q 0.08 TCGA-DK-AA75-01 3 138195328 138195328 C T ESYT3 Missense_Mutation p.S873L 0.56 deleterious(0) benign(0.251) TCGA-DK-AA75-01 3 141923428 141923428 T C GK5 Intron 0.29 TCGA-DK-AA75-01 3 14536401 14536401 C T GRIP2 RNA 0.72 TCGA-DK-AA75-01 3 148939523 148939523 C T CP Silent p.A19A 0.36 TCGA-DK-AA75-01 3 160803733 160803733 G A B3GALNT1 Silent p.V270V 0.26 TCGA-DK-AA75-01 3 169482464 169482464 C T ACTRT3 3'Flank 0.38 TCGA-DK-AA75-01 3 170715730 170715730 C T SLC2A2 Missense_Mutation p.V513I 0.42 tolerated(0.28) benign(0.007) TCGA-DK-AA75-01 3 171431779 171431779 A G PLD1 Missense_Mutation p.I272T 0.53 deleterious(0) possibly_damaging(0.7) TCGA-DK-AA75-01 3 176750885 176750885 G A TBL1XR1 Silent p.D430D 0.40 TCGA-DK-AA75-01 3 179322394 179322394 C T MRPL47 Missense_Mutation p.A7T 0.35 tolerated_low_confidence(0.15) benign(0.008) TCGA-DK-AA75-01 3 184094134 184094134 C T THPO 5'UTR 0.37 TCGA-DK-AA75-01 3 186507968 186507968 G A RFC4 Missense_Mutation p.S320F 0.40 deleterious(0) possibly_damaging(0.841) TCGA-DK-AA75-01 3 189456507 189456507 G C TP63 Missense_Mutation p.E90Q 0.27 tolerated(0.26) benign(0.004) TCGA-DK-AA75-01 3 195453358 195453358 C T MUC20 Silent p.I628I 0.32 TCGA-DK-AA75-01 3 39225860 39225860 C T XIRP1 Missense_Mutation p.D1693N 0.63 tolerated(0.29) benign(0.001) TCGA-DK-AA75-01 3 40553940 40553940 G A ZNF620 Missense_Mutation p.E67K 0.25 tolerated(0.09) possibly_damaging(0.811) TCGA-DK-AA75-01 3 42680017 42680017 C A NKTR Missense_Mutation p.L941M 0.16 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-DK-AA75-01 3 44598938 44598938 G C ZKSCAN7 Missense_Mutation p.Q133H 0.22 tolerated(0.07) benign(0.067) TCGA-DK-AA75-01 3 50223330 50223355 CTACGTGGCGTCAGCCGTGGGTGTCA - SEMA3F Frame_Shift_Del p.Y533Tfs*16 0.26 TCGA-DK-AA75-01 3 50368147 50368147 G A RASSF1 Silent p.F300F 0.38 TCGA-DK-AA75-01 3 61548000 61548000 C T PTPRG Silent p.F13F 0.61 TCGA-DK-AA75-01 3 66024020 66024020 G A MAGI1 5'Flank 0.31 TCGA-DK-AA75-01 3 9166485 9166485 C T SRGAP3 Missense_Mutation p.E62K 0.30 deleterious(0) probably_damaging(0.995) TCGA-DK-AA75-01 3 9822172 9822172 C T TADA3 Missense_Mutation p.E390K 0.18 deleterious(0.01) possibly_damaging(0.679) TCGA-DK-AA75-01 3 9841879 9841879 G C ARPC4 Missense_Mutation p.E64Q 0.23 deleterious(0.04) possibly_damaging(0.868) TCGA-DK-AA75-01 4 100273885 100273885 C G ADH1C 5'UTR 0.26 TCGA-DK-AA75-01 4 102984232 102984232 G A BANK1 Missense_Mutation p.E717K 0.16 tolerated(0.07) benign(0.024) TCGA-DK-AA75-01 4 110897256 110897256 G A EGF Missense_Mutation p.D640N 0.30 tolerated(0.33) benign(0.06) TCGA-DK-AA75-01 4 126373926 126373926 C T FAT4 Missense_Mutation p.P3919S 0.23 possibly_damaging(0.742) TCGA-DK-AA75-01 4 153247280 153247280 G A FBXW7 Nonsense_Mutation p.Q508* 0.29 TCGA-DK-AA75-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.61 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 4 155665354 155665354 C G LRAT 5'UTR 0.33 TCGA-DK-AA75-01 4 159747096 159747096 G A FNIP2 Missense_Mutation p.E46K 0.58 tolerated(0.06) benign(0.198) TCGA-DK-AA75-01 4 16010646 16010646 G A PROM1 Silent p.F409F 0.27 TCGA-DK-AA75-01 4 164087527 164087527 G A NAF1 Missense_Mutation p.S118L 0.56 deleterious_low_confidence(0.01) benign(0.059) TCGA-DK-AA75-01 4 184612496 184612496 G A TRAPPC11 Missense_Mutation p.E641K 0.55 deleterious(0.03) possibly_damaging(0.621) TCGA-DK-AA75-01 4 20550709 20550709 T A SLIT2 Missense_Mutation p.I816N 0.44 deleterious(0) probably_damaging(0.986) TCGA-DK-AA75-01 4 26640456 26640456 G A TBC1D19 Missense_Mutation p.D145N 0.32 deleterious(0.01) possibly_damaging(0.798) TCGA-DK-AA75-01 4 2831536 2831536 C T SH3BP2 Silent p.A358A 0.12 TCGA-DK-AA75-01 4 46966997 46966997 G T GABRA4 Missense_Mutation p.A375D 0.29 tolerated(0.44) benign(0.143) TCGA-DK-AA75-01 4 54327059 54327059 G C LNX1 3'UTR 0.14 TCGA-DK-AA75-01 4 5841313 5841313 C T CRMP1 Missense_Mutation p.V416M 0.67 deleterious(0) probably_damaging(0.977) TCGA-DK-AA75-01 4 6303483 6303483 C T WFS1 Missense_Mutation p.S654L 0.18 deleterious(0) benign(0.011) TCGA-DK-AA75-01 4 73957593 73957593 G A ANKRD17 Missense_Mutation p.P1918S 0.36 benign(0.001) TCGA-DK-AA75-01 4 74735502 74735502 G A CXCL1 Missense_Mutation p.E73K 0.21 deleterious(0) probably_damaging(0.994) TCGA-DK-AA75-01 4 77252544 77252544 C T CCDC158 Silent p.S961S 0.20 TCGA-DK-AA75-01 4 77317612 77317612 G A CCDC158 Missense_Mutation p.S33F 0.23 deleterious(0.01) possibly_damaging(0.643) TCGA-DK-AA75-01 4 79258872 79258872 G A FRAS1 Missense_Mutation p.D775N 0.22 benign(0.027) TCGA-DK-AA75-01 4 8383281 8383281 G A ACOX3 Nonsense_Mutation p.Q531* 0.45 TCGA-DK-AA75-01 4 86646 86646 C T Z95704.2 RNA 0.19 TCGA-DK-AA75-01 4 89352367 89352367 C G HERC6 Missense_Mutation p.F720L 0.27 deleterious(0) probably_damaging(0.997) TCGA-DK-AA75-01 5 11117571 11117571 G A CTNND2 Silent p.I756I 0.26 TCGA-DK-AA75-01 5 112927786 112927786 C G YTHDC2 Missense_Mutation p.R1375G 0.55 deleterious(0.04) benign(0.399) TCGA-DK-AA75-01 5 119800227 119800227 G A PRR16 5'UTR 0.56 TCGA-DK-AA75-01 5 140559057 140559057 C T PCDHB8 Missense_Mutation p.S481L 0.47 deleterious_low_confidence(0.01) benign(0.029) TCGA-DK-AA75-01 5 140604149 140604149 G C PCDHB14 Missense_Mutation p.E358Q 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA75-01 5 140789099 140789099 G C PCDHGB6 Missense_Mutation p.D444H 0.18 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 5 150407494 150407494 C T GPX3 Missense_Mutation p.L162F 0.53 tolerated(0.14) benign(0.233) TCGA-DK-AA75-01 5 167919763 167919763 G C RARS Missense_Mutation p.D94H 0.75 deleterious(0) possibly_damaging(0.695) TCGA-DK-AA75-01 5 180218961 180218961 C A MGAT1 Missense_Mutation p.Q337H 0.76 benign(0.001) TCGA-DK-AA75-01 5 34867123 34867123 G A TTC23L Silent p.Q263Q 0.27 TCGA-DK-AA75-01 5 37379439 37379439 C A WDR70 5'UTR 0.11 TCGA-DK-AA75-01 5 38448409 38448409 T G EGFLAM Missense_Mutation p.I832R 0.33 tolerated(0.12) benign(0.039) TCGA-DK-AA75-01 5 38510788 38510788 G C LIFR Missense_Mutation p.Q257E 0.31 tolerated(0.38) benign(0.001) TCGA-DK-AA75-01 5 38925305 38925305 G C OSMR Splice_Site p.X682_splice 0.26 TCGA-DK-AA75-01 5 43453837 43453837 C T C5orf28 Missense_Mutation p.E79K 0.11 deleterious(0.04) possibly_damaging(0.452) TCGA-DK-AA75-01 5 453787 453787 G A EXOC3 Missense_Mutation p.D223N 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-DK-AA75-01 5 5460817 5460817 C A KIAA0947 Missense_Mutation p.S457Y 0.36 tolerated(0.06) benign(0.063) TCGA-DK-AA75-01 5 65346724 65346724 G A ERBB2IP Missense_Mutation p.D673N 0.26 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-DK-AA75-01 5 78742903 78742903 C G HOMER1 Missense_Mutation p.K120N 0.45 deleterious(0.01) possibly_damaging(0.881) TCGA-DK-AA75-01 5 79030223 79030223 G A CMYA5 Missense_Mutation p.E1879K 0.33 probably_damaging(0.956) TCGA-DK-AA75-01 6 100838770 100838770 C G SIM1 Missense_Mutation p.D590H 0.10 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-DK-AA75-01 6 101296316 101296316 G T ASCC3 Nonsense_Mutation p.S170* 0.08 TCGA-DK-AA75-01 6 110567454 110567454 G A METTL24 Missense_Mutation p.L266F 0.29 deleterious(0) probably_damaging(0.997) TCGA-DK-AA75-01 6 112463405 112463405 C G LAMA4 Silent p.L861L 0.31 TCGA-DK-AA75-01 6 131206307 131206307 G A EPB41L2 Nonsense_Mutation p.Q588* 0.33 TCGA-DK-AA75-01 6 13365752 13365752 C T GFOD1 Silent p.K132K 0.25 TCGA-DK-AA75-01 6 136600973 136600973 G C BCLAF1 Nonsense_Mutation p.S11* 0.06 TCGA-DK-AA75-01 6 1390701 1390701 C T FOXF2 Silent p.Y173Y 0.39 TCGA-DK-AA75-01 6 145051534 145051534 G C UTRN Silent p.L2617L 0.34 TCGA-DK-AA75-01 6 145160364 145160364 C T UTRN Missense_Mutation p.S3374F 0.31 deleterious_low_confidence(0) benign(0.252) TCGA-DK-AA75-01 6 147525746 147525746 G A STXBP5 Silent p.Q26Q 0.59 TCGA-DK-AA75-01 6 152690229 152690229 G A SYNE1 Nonsense_Mutation p.Q3229* 0.24 TCGA-DK-AA75-01 6 170118987 170118987 C T PHF10 Silent p.L74L 0.28 TCGA-DK-AA75-01 6 170162547 170162547 T C ERMARD Silent p.L294L 0.38 TCGA-DK-AA75-01 6 17292231 17292231 C T RBM24 Nonsense_Mutation p.Q198* 0.54 TCGA-DK-AA75-01 6 25973483 25973483 G A TRIM38 Missense_Mutation p.D282N 0.82 tolerated(0.12) benign(0.142) TCGA-DK-AA75-01 6 26216532 26216532 C G HIST1H2BG Missense_Mutation p.E114Q 0.37 deleterious_low_confidence(0.02) benign(0.113) TCGA-DK-AA75-01 6 27107346 27107346 G A HIST1H4I Missense_Mutation p.V87M 0.81 deleterious(0.04) probably_damaging(0.957) TCGA-DK-AA75-01 6 27792092 27792092 G A HIST1H4J Missense_Mutation p.E64K 0.19 tolerated(0.07) benign(0.35) TCGA-DK-AA75-01 6 30865195 30865195 C G DDR1 Silent p.L685L 0.24 TCGA-DK-AA75-01 6 31129691 31129691 G A TCF19 Missense_Mutation p.D236N 0.25 tolerated(0.11) possibly_damaging(0.811) TCGA-DK-AA75-01 6 31660695 31660696 - T ABHD16A Intron 0.34 TCGA-DK-AA75-01 6 31996743 31996743 G A C4B Missense_Mutation p.E1137K 0.29 deleterious(0.02) benign(0.348) TCGA-DK-AA75-01 6 33256755 33256755 C T WDR46 Silent p.P35P 0.44 TCGA-DK-AA75-01 6 33283239 33283239 G C ZBTB22 Missense_Mutation p.I485M 0.11 deleterious(0.01) probably_damaging(0.963) TCGA-DK-AA75-01 6 33636793 33636793 G T ITPR3 Silent p.L683L 0.22 TCGA-DK-AA75-01 6 36168652 36168652 G C BRPF3 Missense_Mutation p.E185Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 6 39082670 39082670 C T SAYSD1 Missense_Mutation p.G66S 0.24 tolerated(1) benign(0.001) TCGA-DK-AA75-01 6 51497405 51497405 T G PKHD1 Missense_Mutation p.S3875R 0.07 deleterious(0.04) benign(0.169) TCGA-DK-AA75-01 6 532572 532572 G C EXOC2 Silent p.L759L 0.29 TCGA-DK-AA75-01 6 56044501 56044501 G C COL21A1 Nonsense_Mutation p.S172* 0.26 TCGA-DK-AA75-01 6 56500398 56500398 G A DST Nonsense_Mutation p.Q522* 0.44 TCGA-DK-AA75-01 6 57037562 57037562 G A BAG2 Missense_Mutation p.D23N 0.37 deleterious(0.04) benign(0.322) TCGA-DK-AA75-01 6 69943186 69943186 G A BAI3 Missense_Mutation p.E829K 0.25 tolerated(0.28) benign(0.039) TCGA-DK-AA75-01 6 74227625 74227625 C A EEF1A1 Missense_Mutation p.V433F 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-DK-AA75-01 6 76022802 76022802 G T FILIP1 Missense_Mutation p.P916T 0.32 deleterious(0) probably_damaging(1) TCGA-DK-AA75-01 7 100075369 100075369 C T TSC22D4 Missense_Mutation p.R98Q 0.62 tolerated(0.06) probably_damaging(0.975) TCGA-DK-AA75-01 7 103141337 103141337 G A RELN Missense_Mutation p.S2841L 0.28 deleterious(0.01) benign(0.146) TCGA-DK-AA75-01 7 116340296 116340296 C T MET Silent p.L386L 0.49 TCGA-DK-AA75-01 7 121731848 121731848 G C AASS Nonsense_Mutation p.S642* 0.27 TCGA-DK-AA75-01 7 131191392 131191392 G A PODXL Silent p.L399L 0.13 TCGA-DK-AA75-01 7 134896302 134896302 G A WDR91 5'Flank 0.24 TCGA-DK-AA75-01 7 135298916 135298916 C T NUP205 Nonsense_Mutation p.Q1069* 0.13 TCGA-DK-AA75-01 7 140373535 140373535 G A ADCK2 Silent p.L135L 0.27 TCGA-DK-AA75-01 7 141738409 141738409 G C MGAM Silent p.L770L 0.33 TCGA-DK-AA75-01 7 142013470 142013470 C T TRBV4-1 Missense_Mutation p.L109F 0.47 tolerated(0.38) benign(0.381) TCGA-DK-AA75-01 7 142028551 142028551 C T TRBV6-1 Silent p.L95L 0.47 TCGA-DK-AA75-01 7 149492424 149492424 C T SSPO RNA 0.28 TCGA-DK-AA75-01 7 150164122 150164122 A C GIMAP8 Missense_Mutation p.E112D 0.48 tolerated(0.16) benign(0.176) TCGA-DK-AA75-01 7 150932354 150932354 G C CHPF2 Missense_Mutation p.E162Q 0.13 tolerated(1) benign(0.008) TCGA-DK-AA75-01 7 151864437 151864437 C G KMT2C Missense_Mutation p.E3182Q 0.09 probably_damaging(0.999) TCGA-DK-AA75-01 7 17367467 17367467 C T AHR Nonsense_Mutation p.Q149* 0.17 TCGA-DK-AA75-01 7 23221659 23221659 C T NUPL2 5'UTR 0.26 TCGA-DK-AA75-01 7 25207993 25207993 C T C7orf31 Missense_Mutation p.E76K 0.15 deleterious(0.04) possibly_damaging(0.542) TCGA-DK-AA75-01 7 2577957 2577957 C T BRAT1 Missense_Mutation p.E738K 0.16 tolerated(0.08) benign(0.255) TCGA-DK-AA75-01 7 32109933 32109933 C T PDE1C Intron 0.27 TCGA-DK-AA75-01 7 40027455 40027455 C T CDK13 Missense_Mutation p.S490L 0.46 deleterious(0) probably_damaging(0.942) TCGA-DK-AA75-01 7 44113619 44113619 G A POLM Silent p.L359L 0.25 TCGA-DK-AA75-01 7 44736643 44736643 C T OGDH Silent p.D677D 0.23 TCGA-DK-AA75-01 7 55224296 55224296 C A EGFR Missense_Mutation p.F359L 0.18 deleterious(0) probably_damaging(0.995) TCGA-DK-AA75-01 7 5792611 5792611 C G RNF216 Splice_Site p.X23_splice 0.22 TCGA-DK-AA75-01 7 6080552 6080552 C T EIF2AK1 Missense_Mutation p.E364K 0.48 tolerated(0.46) benign(0.062) TCGA-DK-AA75-01 7 72420447 72420447 C G POM121 3'UTR 0.18 TCGA-DK-AA75-01 7 73604637 73604637 G A EIF4H Splice_Site p.X157_splice 0.15 TCGA-DK-AA75-01 7 74125425 74125425 C G GTF2I Missense_Mutation p.Q250E 0.22 tolerated(0.05) probably_damaging(0.977) TCGA-DK-AA75-01 7 76239498 76239498 C T POMZP3 3'UTR 0.11 TCGA-DK-AA75-01 7 8275637 8275637 T G ICA1 Splice_Site 0.49 TCGA-DK-AA75-01 7 89854429 89854429 G C STEAP2 Missense_Mutation p.K11N 0.24 tolerated(0.27) benign(0.001) TCGA-DK-AA75-01 7 91652316 91652316 C T AKAP9 Missense_Mutation p.P1381S 0.36 benign(0.047) TCGA-DK-AA75-01 7 92732696 92732696 C T SAMD9 Silent p.L905L 0.07 TCGA-DK-AA75-01 7 97870580 97870580 G C TECPR1 Intron 0.22 TCGA-DK-AA75-01 7 98569558 98569558 G A TRRAP Missense_Mutation p.R2603Q 0.28 benign(0.26) TCGA-DK-AA75-01 7 99103723 99103723 C T ZKSCAN5 Missense_Mutation p.S19F 0.16 deleterious(0.04) benign(0.372) TCGA-DK-AA75-01 8 101932958 101932958 C G YWHAZ Missense_Mutation p.G234A 0.24 tolerated_low_confidence(0.13) unknown(0) TCGA-DK-AA75-01 8 106813558 106813558 C T ZFPM2 Silent p.T416T 0.40 TCGA-DK-AA75-01 8 107718694 107718694 C G OXR1 Missense_Mutation p.I316M 0.08 tolerated(0.25) benign(0.007) TCGA-DK-AA75-01 8 120844830 120844830 C T TAF2 5'UTR 0.29 TCGA-DK-AA75-01 8 120886110 120886110 C T DEPTOR Silent p.G8G 0.40 TCGA-DK-AA75-01 8 121468867 121468867 C A MTBP Nonsense_Mutation p.S235* 0.16 TCGA-DK-AA75-01 8 124992839 124992839 G A FER1L6 Missense_Mutation p.E400K 0.36 tolerated(0.13) possibly_damaging(0.844) TCGA-DK-AA75-01 8 126073338 126073338 G T KIAA0196 Missense_Mutation p.Q503K 0.32 tolerated(0.1) possibly_damaging(0.465) TCGA-DK-AA75-01 8 126369555 126369555 T A NSMCE2 Silent p.I171I 0.22 TCGA-DK-AA75-01 8 130874493 130874493 C T FAM49B Missense_Mutation p.E95K 0.28 tolerated(0.1) possibly_damaging(0.49) TCGA-DK-AA75-01 8 139890007 139890007 C T COL22A1 Missense_Mutation p.R215H 0.15 unknown(0) TCGA-DK-AA75-01 8 145689483 145689483 G A CYHR1 Intron 0.25 TCGA-DK-AA75-01 8 145693290 145693290 G A KIFC2 Missense_Mutation p.E244K 0.41 tolerated(0.09) benign(0.062) TCGA-DK-AA75-01 8 146033033 146033033 G C ZNF517 Missense_Mutation p.Q244H 0.33 tolerated(0.17) possibly_damaging(0.558) TCGA-DK-AA75-01 8 146107371 146107371 G A ZNF250 Silent p.F404F 0.21 TCGA-DK-AA75-01 8 22069269 22069269 G A BMP1 3'UTR 0.76 TCGA-DK-AA75-01 8 22880323 22880323 C T TNFRSF10B Missense_Mutation p.R395Q 0.48 tolerated(0.23) benign(0.106) TCGA-DK-AA75-01 8 28965660 28965660 T C KIF13B Missense_Mutation p.N1404S 0.42 tolerated(0.1) benign(0.022) TCGA-DK-AA75-01 8 29927436 29927436 A G TMEM66 Missense_Mutation p.L141P 0.34 tolerated(0.22) possibly_damaging(0.677) TCGA-DK-AA75-01 8 35401971 35401971 C T UNC5D Intron 0.24 TCGA-DK-AA75-01 8 48883359 48883359 G A MCM4 Missense_Mutation p.E575K 0.28 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 8 81400006 81400006 G A ZBTB10 Missense_Mutation p.A321T 0.27 tolerated_low_confidence(0.23) benign(0.114) TCGA-DK-AA75-01 8 8559890 8559890 G A CLDN23 5'UTR 0.96 TCGA-DK-AA75-01 8 86057732 86057732 C G LRRCC1 Missense_Mutation p.Q1029E 0.19 deleterious(0) possibly_damaging(0.529) TCGA-DK-AA75-01 9 100672686 100672686 C T C9orf156 Missense_Mutation p.E208K 0.88 tolerated(0.59) benign(0.001) TCGA-DK-AA75-01 9 100895394 100895394 C T CORO2A Missense_Mutation p.G192S 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-AA75-01 9 111665175 111665175 G A IKBKAP Missense_Mutation p.P600S 0.42 tolerated(0.46) benign(0.026) TCGA-DK-AA75-01 9 115818939 115818939 C T ZFP37 Silent p.L10L 0.80 TCGA-DK-AA75-01 9 116840478 116840478 G A AMBP Silent p.L4L 0.88 TCGA-DK-AA75-01 9 119109464 119109464 T C PAPPA Missense_Mutation p.C1314R 0.88 deleterious(0) possibly_damaging(0.712) TCGA-DK-AA75-01 9 131019783 131019783 C T GOLGA2 Missense_Mutation p.E887K 0.32 tolerated(0.08) benign(0.059) TCGA-DK-AA75-01 9 135906452 135906452 G C GTF3C5 Silent p.L18L 0.27 TCGA-DK-AA75-01 9 140099717 140099717 G A TMEM203 Silent p.F50F 0.69 TCGA-DK-AA75-01 9 140850223 140850223 G A CACNA1B Missense_Mutation p.E382K 0.47 deleterious(0) possibly_damaging(0.651) TCGA-DK-AA75-01 9 15468757 15468757 C T PSIP1 Missense_Mutation p.E431K 0.81 tolerated(0.16) probably_damaging(0.992) TCGA-DK-AA75-01 9 18474124 18474124 G A ADAMTSL1 5'UTR 0.91 TCGA-DK-AA75-01 9 2058337 2058337 A G SMARCA2 Missense_Mutation p.Y465C 0.42 benign(0.285) TCGA-DK-AA75-01 9 32436261 32436261 G C ACO1 Missense_Mutation p.E705Q 0.38 deleterious(0.05) benign(0.098) TCGA-DK-AA75-01 9 73002625 73002625 G A KLF9 3'UTR 0.19 TCGA-DK-AA75-01 9 85597516 85597516 C T RASEF 3'UTR 0.73 TCGA-DK-AA75-01 9 95887273 95887273 C T NINJ1 Missense_Mutation p.V126M 0.89 deleterious(0) probably_damaging(0.992) TCGA-DK-AA75-01 9 97522235 97522235 A G C9orf3 Missense_Mutation p.N57S 0.34 tolerated(1) benign(0) TCGA-DK-AA75-01 9 97522534 97522534 G C C9orf3 Missense_Mutation p.E157Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-DK-AA75-01 X 100125721 100125721 C T NOX1 Missense_Mutation p.R43K 0.87 deleterious(0.03) benign(0.41) TCGA-DK-AA75-01 X 109698613 109698613 A G RGAG1 3'UTR 0.93 TCGA-DK-AA75-01 X 119691810 119691810 G A CUL4B Missense_Mutation p.S232L 0.28 deleterious(0.01) benign(0.39) TCGA-DK-AA75-01 X 129281744 129281744 G T AIFM1 Silent p.R153R 0.90 TCGA-DK-AA75-01 X 151900649 151900649 C T MAGEA12 Missense_Mutation p.R51Q 0.85 tolerated(0.07) benign(0.001) TCGA-DK-AA75-01 X 153587899 153587899 G A FLNA Silent p.I1365I 0.38 TCGA-DK-AA75-01 X 153640475 153640475 C T TAZ Silent p.I54I 0.47 TCGA-DK-AA75-01 X 20190950 20190950 C A RPS6KA3 Nonsense_Mutation p.E423* 0.32 TCGA-DK-AA75-01 X 21667011 21667011 G C CNKSR2 Missense_Mutation p.A919P 0.35 deleterious(0) benign(0.421) TCGA-DK-AA75-01 X 47775381 47775381 C G ZNF81 Missense_Mutation p.Q446E 0.40 tolerated(1) benign(0) TCGA-DK-AA75-01 X 53619390 53619390 C T HUWE1 Missense_Mutation p.E1314K 0.41 benign(0.107) TCGA-DK-AA75-01 X 77275802 77275802 G A ATP7A Silent p.Q896Q 0.87 TCGA-DK-AA75-01 X 83724049 83724049 G A HDX Nonsense_Mutation p.Q228* 0.48 TCGA-DK-AA75-01 X 9914831 9914831 G A SHROOM2 Missense_Mutation p.E1569K 0.55 deleterious(0.01) possibly_damaging(0.492) TCGA-DK-AA76-01 10 105947102 105947102 G C WDR96 Missense_Mutation p.I612M 0.26 deleterious(0) possibly_damaging(0.885) TCGA-DK-AA76-01 10 11312646 11312646 C T CELF2 Silent p.I212I 0.61 TCGA-DK-AA76-01 10 114181382 114181382 C T ACSL5 Missense_Mutation p.T505I 0.17 deleterious(0) possibly_damaging(0.875) TCGA-DK-AA76-01 10 119799708 119799708 A T RAB11FIP2 Missense_Mutation p.L241Q 0.53 deleterious(0) benign(0.259) TCGA-DK-AA76-01 10 123247514 123247514 C G FGFR2 Missense_Mutation p.K660N 0.29 deleterious(0) benign(0.369) TCGA-DK-AA76-01 10 13838504 13838504 A T FRMD4A Missense_Mutation p.F97L 0.04 deleterious(0.01) possibly_damaging(0.906) TCGA-DK-AA76-01 10 17195596 17195596 C G TRDMT1 Missense_Mutation p.E329Q 0.67 tolerated(0.05) probably_damaging(0.966) TCGA-DK-AA76-01 10 27536649 27536649 C A RP11-85G18.6 Intron 0.47 TCGA-DK-AA76-01 10 47911070 47911070 G C FAM21B Missense_Mutation p.G313A 0.38 tolerated(0.29) probably_damaging(0.992) TCGA-DK-AA76-01 10 61413875 61413875 G A SLC16A9 Silent p.N303N 0.21 TCGA-DK-AA76-01 10 70644366 70644366 C T STOX1 Missense_Mutation p.L272F 0.25 tolerated(0.15) benign(0.041) TCGA-DK-AA76-01 10 75135976 75135976 C G ANXA7 Splice_Site p.X449_splice 0.24 TCGA-DK-AA76-01 10 79010950 79010950 C A KCNMA1 Intron 0.30 TCGA-DK-AA76-01 10 91162847 91162847 A T IFIT1 Missense_Mutation p.E272V 0.66 deleterious(0.02) possibly_damaging(0.493) TCGA-DK-AA76-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.26 TCGA-DK-AA76-01 10 96162370 96162373 GATG - TBC1D12 Missense_Mutation p.M1_?2 0.47 TCGA-DK-AA76-01 11 102984333 102984333 A T DYNC2H1 Missense_Mutation p.D88V 0.40 benign(0.062) TCGA-DK-AA76-01 11 120998535 120998535 C G TECTA Missense_Mutation p.L617V 0.05 tolerated(0.28) benign(0.062) TCGA-DK-AA76-01 11 122929133 122929133 C T HSPA8 Missense_Mutation p.E528K 0.47 deleterious_low_confidence(0.02) benign(0.014) TCGA-DK-AA76-01 11 125867251 125867251 T C CDON Missense_Mutation p.Y738C 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-DK-AA76-01 11 13410643 13410643 C A BTBD10 Missense_Mutation p.R388L 0.06 deleterious(0) possibly_damaging(0.533) TCGA-DK-AA76-01 11 134244528 134244528 C T GLB1L2 Silent p.G580G 0.47 TCGA-DK-AA76-01 11 36250845 36250845 G C LDLRAD3 Silent p.L312L 0.81 TCGA-DK-AA76-01 11 48347200 48347200 C T OR4C3 Silent p.F236F 0.65 TCGA-DK-AA76-01 11 4936541 4936541 G A OR51G2 Missense_Mutation p.S118F 0.89 deleterious(0) probably_damaging(0.998) TCGA-DK-AA76-01 11 5153584 5153584 C G OR52A5 Missense_Mutation p.D97H 0.75 tolerated(0.3) benign(0.098) TCGA-DK-AA76-01 11 55658697 55658697 A G TRIM51 Silent p.Q316Q 0.21 TCGA-DK-AA76-01 11 59417023 59417023 C T PATL1 Missense_Mutation p.E549K 0.34 tolerated(0.13) benign(0.127) TCGA-DK-AA76-01 11 64645786 64645786 C T EHD1 Missense_Mutation p.E51K 0.48 tolerated(0.12) benign(0.009) TCGA-DK-AA76-01 11 64717303 64717303 G C C11orf85 Missense_Mutation p.F87L 0.49 deleterious(0.02) benign(0.02) TCGA-DK-AA76-01 11 66472475 66472475 C T SPTBN2 Missense_Mutation p.D758N 0.44 deleterious(0) probably_damaging(0.998) TCGA-DK-AA76-01 11 76877197 76877197 G C MYO7A Missense_Mutation p.D596H 0.46 deleterious(0) probably_damaging(0.995) TCGA-DK-AA76-01 11 76901909 76901909 T G MYO7A Missense_Mutation p.F1306L 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-DK-AA76-01 11 92531985 92531985 A T FAT3 Missense_Mutation p.S1936C 0.48 possibly_damaging(0.738) TCGA-DK-AA76-01 11 96125185 96125185 G A JRKL Missense_Mutation p.D458N 0.44 tolerated(0.05) benign(0.244) TCGA-DK-AA76-01 12 100957037 100957037 T C NR1H4 Missense_Mutation p.Y411H 0.47 tolerated(0.43) possibly_damaging(0.615) TCGA-DK-AA76-01 12 109186002 109186002 C G SSH1 Intron 0.29 TCGA-DK-AA76-01 12 110230226 110230226 G A TRPV4 Silent p.F611F 0.43 TCGA-DK-AA76-01 12 111085637 111085637 C T TCTN1 Silent p.F573F 0.48 TCGA-DK-AA76-01 12 113307585 113307585 G T RPH3A Missense_Mutation p.G211V 0.43 tolerated(0.27) benign(0.046) TCGA-DK-AA76-01 12 119419724 119419724 G C SRRM4 Missense_Mutation p.E13Q 0.38 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA76-01 12 121855573 121855573 G T RNF34 Silent p.L165L 0.47 TCGA-DK-AA76-01 12 122199597 122199597 C A TMEM120B Nonsense_Mutation p.Y168* 0.10 TCGA-DK-AA76-01 12 122745927 122745927 C T VPS33A Missense_Mutation p.E122K 0.42 tolerated(0.18) possibly_damaging(0.611) TCGA-DK-AA76-01 12 123187135 123187135 G A HCAR2 Silent p.F232F 0.12 TCGA-DK-AA76-01 12 123200589 123200589 G A HCAR3 Silent p.F232F 0.36 TCGA-DK-AA76-01 12 133256217 133256217 C G POLE Missense_Mutation p.L148F 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-DK-AA76-01 12 23687344 23687344 T G SOX5 Missense_Mutation p.S701R 0.10 deleterious(0) possibly_damaging(0.849) TCGA-DK-AA76-01 12 27934101 27934101 G A KLHL42 Missense_Mutation p.E280K 0.32 tolerated(0.16) possibly_damaging(0.637) TCGA-DK-AA76-01 12 34175643 34175643 G A ALG10 Missense_Mutation p.D37N 0.47 deleterious(0.04) probably_damaging(0.954) TCGA-DK-AA76-01 12 40114607 40114607 C G C12orf40 Missense_Mutation p.Q505E 0.12 tolerated(0.08) benign(0.055) TCGA-DK-AA76-01 12 46246374 46246374 G T ARID2 Nonsense_Mutation p.G1490* 0.49 TCGA-DK-AA76-01 12 4702297 4702297 C T DYRK4 Missense_Mutation p.T83M 0.33 tolerated(0.2) benign(0.068) TCGA-DK-AA76-01 12 4708895 4708897 AGG TT DYRK4 Frame_Shift_Del p.K241Ifs*35 0.41 TCGA-DK-AA76-01 12 4796181 4796181 C G NDUFA9 Silent p.L347L 0.49 TCGA-DK-AA76-01 12 55714857 55714857 C G OR6C1 Silent p.L158L 0.51 TCGA-DK-AA76-01 12 56720472 56720472 G A PAN2 Silent p.L397L 0.80 TCGA-DK-AA76-01 12 56998058 56998058 A G BAZ2A Missense_Mutation p.L996P 0.50 deleterious(0) probably_damaging(0.999) TCGA-DK-AA76-01 12 6219611 6219611 T G VWF Missense_Mutation p.Y154S 0.42 deleterious(0.01) benign(0.258) TCGA-DK-AA76-01 12 7045248 7045248 C A ATN1 Missense_Mutation p.T273K 0.11 benign(0.007) TCGA-DK-AA76-01 12 7947073 7947073 C T NANOG Silent p.N145N 0.14 TCGA-DK-AA76-01 12 79986467 79986467 C G PAWR Missense_Mutation p.D315H 0.22 deleterious(0) probably_damaging(0.999) TCGA-DK-AA76-01 13 35751167 35751167 C T NBEA Missense_Mutation p.P1530L 0.21 deleterious(0) benign(0.036) TCGA-DK-AA76-01 13 39422618 39422618 A C FREM2 Missense_Mutation p.I2064L 0.04 deleterious(0.04) probably_damaging(0.996) TCGA-DK-AA76-01 13 48985955 48985955 G A LPAR6 Missense_Mutation p.T202I 0.31 tolerated(0.27) benign(0.042) TCGA-DK-AA76-01 13 58206918 58206918 G A PCDH17 Missense_Mutation p.D80N 0.37 tolerated(0.07) benign(0.026) TCGA-DK-AA76-01 14 100126738 100126738 G A HHIPL1 Missense_Mutation p.M499I 0.43 deleterious(0.04) probably_damaging(0.968) TCGA-DK-AA76-01 14 102372770 102372777 ATGAATAC - PPP2R5C Frame_Shift_Del p.E384Hfs*6 0.18 TCGA-DK-AA76-01 14 105416415 105416415 C T AHNAK2 Silent p.V1791V 0.34 TCGA-DK-AA76-01 14 105677537 105677537 C T BRF1 Missense_Mutation p.E640K 0.73 tolerated(0.49) benign(0.222) TCGA-DK-AA76-01 14 106321875 106321875 C T IGHM Missense_Mutation p.R120H 0.62 deleterious(0.01) probably_damaging(0.995) TCGA-DK-AA76-01 14 106641599 106641599 C G IGHV1-18 Silent p.L105L 0.46 TCGA-DK-AA76-01 14 106829683 106829683 T C IGHV4-34 Missense_Mutation p.T94A 0.12 deleterious(0.03) possibly_damaging(0.462) TCGA-DK-AA76-01 14 21967676 21967676 C T METTL3 Missense_Mutation p.R471H 0.87 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 14 24885206 24885206 C T NYNRIN Silent p.L1417L 0.79 TCGA-DK-AA76-01 14 24885497 24885497 C T NYNRIN Silent p.L1514L 0.78 TCGA-DK-AA76-01 14 50863866 50863866 G A CDKL1 5'Flank 0.93 TCGA-DK-AA76-01 14 58934551 58934551 C T KIAA0586 Nonsense_Mutation p.R838* 0.87 TCGA-DK-AA76-01 14 75329860 75329860 C G PROX2 Silent p.L226L 0.34 TCGA-DK-AA76-01 14 88945819 88945819 G C PTPN21 Silent p.L652L 0.61 TCGA-DK-AA76-01 14 92040815 92040815 C T AL133373.1 Missense_Mutation p.E48K 0.24 unknown(0) TCGA-DK-AA76-01 15 22382610 22382610 T A OR4N4 Silent p.I46I 0.16 TCGA-DK-AA76-01 15 30058469 30058471 CTT - TJP1 In_Frame_Del p.E197del 0.16 TCGA-DK-AA76-01 15 33359374 33359374 C T FMN1 Missense_Mutation p.E238K 0.40 tolerated_low_confidence(0.09) unknown(0) TCGA-DK-AA76-01 15 34080544 34080544 G A RYR3 Missense_Mutation p.D3239N 0.61 possibly_damaging(0.666) TCGA-DK-AA76-01 15 34355828 34355828 A T CHRM5 Missense_Mutation p.S304C 0.15 tolerated(0.09) probably_damaging(0.926) TCGA-DK-AA76-01 15 35182483 35182483 C G AQR Missense_Mutation p.D872H 0.32 deleterious(0.01) possibly_damaging(0.89) TCGA-DK-AA76-01 15 41862487 41862487 C T TYRO3 Missense_Mutation p.R478W 0.08 deleterious(0.03) benign(0.014) TCGA-DK-AA76-01 15 41862876 41862876 C A TYRO3 Missense_Mutation p.L520M 0.17 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 15 41864735 41864735 C T TYRO3 Silent p.L616L 0.17 TCGA-DK-AA76-01 15 56208871 56208871 G A NEDD4 Silent p.P53P 0.53 TCGA-DK-AA76-01 15 59445944 59445944 G T MYO1E Silent p.P975P 0.19 TCGA-DK-AA76-01 15 74702840 74702840 C A SEMA7A 3'UTR 0.33 TCGA-DK-AA76-01 15 74702841 74702841 T G SEMA7A 3'UTR 0.33 TCGA-DK-AA76-01 15 90903561 90903561 C T ZNF774 Silent p.L166L 0.60 TCGA-DK-AA76-01 15 90903711 90903711 C A ZNF774 Missense_Mutation p.F216L 0.68 deleterious(0) probably_damaging(0.993) TCGA-DK-AA76-01 15 91423985 91423985 G A FURIN Missense_Mutation p.E541K 0.43 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 16 2130277 2130277 C A TSC2 Nonsense_Mutation p.S1170* 0.12 TCGA-DK-AA76-01 16 23632744 23632744 C T PALB2 Missense_Mutation p.E1018K 0.22 deleterious(0) probably_damaging(0.973) TCGA-DK-AA76-01 16 28906140 28906140 C T ATP2A1 Intron 0.31 TCGA-DK-AA76-01 16 29883583 29883583 G C SEZ6L2 Missense_Mutation p.F876L 0.43 tolerated(1) benign(0) TCGA-DK-AA76-01 16 30197968 30197968 C T CORO1A Missense_Mutation p.P83L 0.30 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 16 3639246 3639246 G A SLX4 Missense_Mutation p.R1465C 0.46 tolerated(0.07) benign(0.002) TCGA-DK-AA76-01 16 50357575 50357575 G C BRD7 Missense_Mutation p.P456A 0.09 tolerated(0.21) benign(0.223) TCGA-DK-AA76-01 16 66997260 66997260 G A CES3 Silent p.V87V 0.25 TCGA-DK-AA76-01 16 67575416 67575416 C G FAM65A Silent p.P315P 0.06 TCGA-DK-AA76-01 16 69400865 69400865 C T TERF2 Silent p.K353K 0.83 TCGA-DK-AA76-01 16 7760716 7760716 G A RBFOX1 Missense_Mutation p.R409Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-DK-AA76-01 16 77918652 77918652 C A VAT1L Missense_Mutation p.Q344K 0.54 tolerated(0.14) benign(0.003) TCGA-DK-AA76-01 17 15928487 15928487 T A TTC19 Splice_Site p.X277_splice 0.41 TCGA-DK-AA76-01 17 17131267 17131267 C A FLCN Missense_Mutation p.S62I 0.49 deleterious(0.03) benign(0.054) TCGA-DK-AA76-01 17 2266756 2266756 C G SGSM2 Intron 0.21 TCGA-DK-AA76-01 17 27889648 27889648 C G ABHD15 Missense_Mutation p.Q446H 0.41 tolerated(0.57) benign(0.004) TCGA-DK-AA76-01 17 36365087 36365087 C T RP11-1407O15.2 Missense_Mutation p.E170K 0.06 TCGA-DK-AA76-01 17 44954072 44954072 C T WNT9B Silent p.T354T 0.12 TCGA-DK-AA76-01 17 45915932 45915932 G A SCRN2 Silent p.C301C 0.12 TCGA-DK-AA76-01 17 48669430 48669430 C T CACNA1G Silent p.L963L 0.35 TCGA-DK-AA76-01 17 5461801 5461801 C T NLRP1 Missense_Mutation p.E739K 0.31 deleterious(0.04) benign(0.001) TCGA-DK-AA76-01 17 56083887 56083887 C G SRSF1 Missense_Mutation p.D66H 0.37 deleterious(0.01) probably_damaging(0.976) TCGA-DK-AA76-01 17 61621021 61621021 G C KCNH6 Missense_Mutation p.G745R 0.08 tolerated(0.1) benign(0.024) TCGA-DK-AA76-01 17 65978372 65978372 C G BPTF Missense_Mutation p.H2911D 0.27 probably_damaging(0.948) TCGA-DK-AA76-01 17 66873737 66873737 C A ABCA8 Silent p.L1334L 0.31 TCGA-DK-AA76-01 17 79408925 79408925 G A RP11-1055B8.7 Missense_Mutation p.V184M 0.13 benign(0.079) TCGA-DK-AA76-01 17 8076764 8076764 C T TMEM107 3'Flank 0.44 TCGA-DK-AA76-01 18 29111175 29111175 C T DSG2 Nonsense_Mutation p.Q414* 0.47 TCGA-DK-AA76-01 18 34310608 34310608 G C FHOD3 Splice_Site p.X965_splice 0.46 TCGA-DK-AA76-01 18 43698276 43698276 T C HAUS1 Missense_Mutation p.L112P 0.04 deleterious(0) possibly_damaging(0.724) TCGA-DK-AA76-01 19 12865791 12865791 G T BEST2 Missense_Mutation p.Q194H 0.41 deleterious(0.01) probably_damaging(0.91) TCGA-DK-AA76-01 19 35739733 35739733 G A LSR 5'UTR 0.33 TCGA-DK-AA76-01 19 44612069 44612069 C T ZNF224 Missense_Mutation p.H586Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-DK-AA76-01 19 44832626 44832626 G A ZNF112 Missense_Mutation p.L568F 0.24 deleterious(0) probably_damaging(0.998) TCGA-DK-AA76-01 19 45448494 45448494 G C APOC4 Missense_Mutation p.D106H 0.22 deleterious(0) possibly_damaging(0.755) TCGA-DK-AA76-01 19 47984069 47984069 C G KPTN Missense_Mutation p.E183Q 0.69 tolerated(0.13) possibly_damaging(0.555) TCGA-DK-AA76-01 19 48343251 48343251 C T CRX 3'UTR 0.21 TCGA-DK-AA76-01 19 50360362 50360362 G A PTOV1 Missense_Mutation p.R230Q 0.21 tolerated(0.06) possibly_damaging(0.599) TCGA-DK-AA76-01 19 51890569 51890569 C T LIM2 Nonsense_Mutation p.W43* 0.25 TCGA-DK-AA76-01 19 54496159 54496159 G A CACNG6 Missense_Mutation p.E10K 0.20 deleterious(0.01) possibly_damaging(0.697) TCGA-DK-AA76-01 19 54667405 54667405 C T TMC4 Intron 0.23 TCGA-DK-AA76-01 19 55693262 55693262 C T PTPRH Missense_Mutation p.V1070I 0.27 possibly_damaging(0.899) TCGA-DK-AA76-01 19 58992160 58992160 C G ZNF446 3'UTR 0.33 TCGA-DK-AA76-01 1 108115939 108115939 C T VAV3 3'UTR 0.31 TCGA-DK-AA76-01 1 111660814 111660814 C T DRAM2 Missense_Mutation p.E257K 0.36 tolerated(0.08) benign(0.344) TCGA-DK-AA76-01 1 112043173 112043173 T C ADORA3 Intron 0.47 TCGA-DK-AA76-01 1 145508513 145508513 G C RBM8A Missense_Mutation p.E82Q 0.96 deleterious(0) probably_damaging(0.98) TCGA-DK-AA76-01 1 145508608 145508608 G A RBM8A Silent p.L113L 0.93 TCGA-DK-AA76-01 1 145509201 145509201 G C RBM8A Missense_Mutation p.R172T 0.80 deleterious(0) unknown(0) TCGA-DK-AA76-01 1 146680603 146680603 C A FMO5 Missense_Mutation p.S214I 0.23 deleterious(0) possibly_damaging(0.903) TCGA-DK-AA76-01 1 153949716 153949716 C A JTB Missense_Mutation p.A5S 0.44 tolerated_low_confidence(0.16) benign(0.001) TCGA-DK-AA76-01 1 154918384 154918384 G C PBXIP1 Nonsense_Mutation p.S589* 0.06 TCGA-DK-AA76-01 1 154942884 154942884 G T SHC1 Nonsense_Mutation p.S40* 0.17 TCGA-DK-AA76-01 1 155234520 155234520 C G CLK2 Missense_Mutation p.D326H 0.98 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 1 155349900 155349934 ATACTTTCCTGAAACAAAAAACACTATTAATTTCA - ASH1L Splice_Site p.X2035_splice 0.37 TCGA-DK-AA76-01 1 160321571 160321571 C A NCSTN Missense_Mutation p.D273E 0.31 tolerated(1) benign(0.001) TCGA-DK-AA76-01 1 161334764 161334764 G C C1orf192 Silent p.A175A 0.09 TCGA-DK-AA76-01 1 17318752 17318752 C T ATP13A2 Missense_Mutation p.C664Y 0.75 deleterious(0) probably_damaging(0.995) TCGA-DK-AA76-01 1 17319052 17319052 C T ATP13A2 Missense_Mutation p.D592N 0.38 tolerated(0.07) benign(0.219) TCGA-DK-AA76-01 1 173931017 173931017 C T RC3H1 Missense_Mutation p.R683K 0.91 deleterious(0.01) probably_damaging(0.986) TCGA-DK-AA76-01 1 197029556 197029556 C A F13B Nonsense_Mutation p.G249* 0.11 TCGA-DK-AA76-01 1 201777258 201777258 G A NAV1 Missense_Mutation p.V1276M 0.92 tolerated(0.17) possibly_damaging(0.522) TCGA-DK-AA76-01 1 202107112 202107112 G C ARL8A Missense_Mutation p.R87G 0.15 deleterious(0) benign(0.26) TCGA-DK-AA76-01 1 202302605 202302614 ACAAATCCTT - UBE2T Frame_Shift_Del p.R84Wfs*22 0.12 TCGA-DK-AA76-01 1 203154457 203154457 C T CHI3L1 Missense_Mutation p.D38N 0.47 tolerated(0.48) benign(0.004) TCGA-DK-AA76-01 1 227923158 227923158 G A SNAP47 Silent p.P16P 1.00 TCGA-DK-AA76-01 1 228524764 228524764 G C OBSCN Missense_Mutation p.E6490Q 0.36 probably_damaging(0.999) TCGA-DK-AA76-01 1 235973008 235973008 C T LYST Silent p.Q370Q 0.04 TCGA-DK-AA76-01 1 247902645 247902645 C T OR14K1 Silent p.L243L 0.94 TCGA-DK-AA76-01 1 27088787 27088788 - GG ARID1A Frame_Shift_Ins p.Q802Vfs*32 0.30 TCGA-DK-AA76-01 1 29475342 29475342 C G SRSF4 Missense_Mutation p.K355N 0.17 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA76-01 1 32146636 32146636 G T COL16A1 Silent p.L857L 0.45 TCGA-DK-AA76-01 1 35250926 35250926 C T GJB3 Missense_Mutation p.T188I 0.15 tolerated(0.17) probably_damaging(1) TCGA-DK-AA76-01 1 46662485 46662485 C T POMGNT1 Missense_Mutation p.R91K 0.43 benign(0.031) TCGA-DK-AA76-01 1 78183636 78183636 G T USP33 Missense_Mutation p.Q643K 0.36 tolerated(0.14) benign(0.423) TCGA-DK-AA76-01 1 87043674 87043674 C G CLCA4 Missense_Mutation p.H681D 0.25 tolerated(0.29) benign(0.003) TCGA-DK-AA76-01 1 92433781 92433781 G C BRDT Missense_Mutation p.E137Q 0.39 deleterious(0) probably_damaging(0.985) TCGA-DK-AA76-01 20 2444495 2444495 G A SNRPB Silent p.I106I 0.43 TCGA-DK-AA76-01 20 31624320 31624320 G T BPIFB6 Missense_Mutation p.S216I 0.14 deleterious(0.02) possibly_damaging(0.472) TCGA-DK-AA76-01 20 33462931 33462931 G T ACSS2 5'Flank 0.17 TCGA-DK-AA76-01 20 41306533 41306533 G A PTPRT Missense_Mutation p.P376S 0.38 tolerated(0.1) probably_damaging(0.996) TCGA-DK-AA76-01 20 43043184 43043184 G C HNF4A Missense_Mutation p.R177P 0.33 tolerated(0.12) probably_damaging(0.999) TCGA-DK-AA76-01 20 43585084 43585084 C G TOMM34 Missense_Mutation p.R57P 0.43 deleterious(0) probably_damaging(0.997) TCGA-DK-AA76-01 20 50049190 50049190 C G NFATC2 Silent p.P712P 0.19 TCGA-DK-AA76-01 20 5904338 5904338 G A CHGB Silent p.K516K 0.48 TCGA-DK-AA76-01 20 62196284 62196284 G A HELZ2 Silent p.L1297L 0.30 TCGA-DK-AA76-01 20 9402088 9402088 G C PLCB4 Missense_Mutation p.E755Q 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA76-01 21 17443705 17443705 C T LINC00478 RNA 0.28 TCGA-DK-AA76-01 21 47704183 47704183 G A MCM3AP Missense_Mutation p.R340W 0.05 deleterious(0) probably_damaging(0.999) TCGA-DK-AA76-01 22 26875278 26875278 C G HPS4 Missense_Mutation p.E29Q 0.28 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 22 36681757 36681757 C A MYH9 Nonsense_Mutation p.E1741* 0.59 TCGA-DK-AA76-01 22 37494578 37494578 C T TMPRSS6 Missense_Mutation p.E81K 0.28 tolerated(0.09) benign(0.371) TCGA-DK-AA76-01 22 41790148 41790148 A G TEF Missense_Mutation p.N175S 0.39 tolerated(0.14) benign(0.002) TCGA-DK-AA76-01 22 42126602 42126602 G T MEI1 Nonsense_Mutation p.E353* 0.34 TCGA-DK-AA76-01 2 131976417 131976417 T G POTEE Missense_Mutation p.W148G 0.11 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-DK-AA76-01 2 141201949 141201949 C A LRP1B Missense_Mutation p.R3415I 0.18 possibly_damaging(0.639) TCGA-DK-AA76-01 2 145147089 145147089 C T ZEB2 Missense_Mutation p.D1192N 0.49 deleterious_low_confidence(0.01) benign(0.212) TCGA-DK-AA76-01 2 160310174 160310174 A T BAZ2B Missense_Mutation p.L95H 0.26 possibly_damaging(0.869) TCGA-DK-AA76-01 2 170042460 170042460 A G LRP2 Missense_Mutation p.F3133S 0.48 probably_damaging(0.995) TCGA-DK-AA76-01 2 178990886 178990886 C T RBM45 Missense_Mutation p.R470W 0.42 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 2 179578666 179578666 G A TTN Missense_Mutation p.P8907S 0.58 TCGA-DK-AA76-01 2 204064152 204064152 A T NBEAL1 Missense_Mutation p.Q2378L 0.06 deleterious(0) benign(0.066) TCGA-DK-AA76-01 2 208633392 208633392 C T FZD5 Silent p.A24A 0.54 TCGA-DK-AA76-01 2 21239346 21239346 C G APOB Missense_Mutation p.K1099N 0.44 possibly_damaging(0.722) TCGA-DK-AA76-01 2 216243955 216243955 G A FN1 Silent p.L1840L 0.85 TCGA-DK-AA76-01 2 220115094 220115094 C T TUBA4A Missense_Mutation p.E443K 0.06 deleterious_low_confidence(0.02) benign(0.029) TCGA-DK-AA76-01 2 26684662 26684662 T A OTOF Missense_Mutation p.E1812V 0.37 deleterious(0) probably_damaging(0.918) TCGA-DK-AA76-01 2 27373165 27373165 G A TCF23 Missense_Mutation p.G133S 0.49 tolerated(0.07) probably_damaging(0.999) TCGA-DK-AA76-01 2 48026581 48026581 G A MSH6 Missense_Mutation p.E487K 0.27 deleterious(0) probably_damaging(0.998) TCGA-DK-AA76-01 2 64160937 64160937 G A VPS54 Nonsense_Mutation p.Q537* 0.43 TCGA-DK-AA76-01 2 70903984 70903984 C G ADD2 Missense_Mutation p.A513P 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-DK-AA76-01 3 10452387 10452387 C T ATP2B2 Silent p.Q104Q 0.43 TCGA-DK-AA76-01 3 108705730 108705730 G T MORC1 Missense_Mutation p.Q752K 0.27 tolerated(1) benign(0) TCGA-DK-AA76-01 3 11076243 11076243 G A SLC6A1 Silent p.Q518Q 0.33 TCGA-DK-AA76-01 3 123046561 123046561 G C ADCY5 Missense_Mutation p.D617E 0.35 tolerated(0.12) benign(0.419) TCGA-DK-AA76-01 3 124738120 124738120 C A HEG1 Missense_Mutation p.R525L 0.41 tolerated(0.26) benign(0.013) TCGA-DK-AA76-01 3 134278072 134278072 C T CEP63 Missense_Mutation p.A585V 0.47 tolerated(0.33) benign(0.046) TCGA-DK-AA76-01 3 136152409 136152409 T A STAG1 Missense_Mutation p.T547S 0.32 tolerated(0.44) benign(0.025) TCGA-DK-AA76-01 3 15115431 15115431 A G ZFYVE20 Missense_Mutation p.L738P 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DK-AA76-01 3 178948160 178948160 G A PIK3CA Missense_Mutation p.E978K 0.64 tolerated(0.44) benign(0.02) TCGA-DK-AA76-01 3 183995837 183995837 G A ECE2 Silent p.K319K 0.10 TCGA-DK-AA76-01 3 24001167 24001167 C G NR1D2 Missense_Mutation p.F126L 0.57 deleterious(0) probably_damaging(0.994) TCGA-DK-AA76-01 3 25470137 25470137 G C RARB 5'UTR 0.43 TCGA-DK-AA76-01 3 27760355 27760355 G A EOMES Silent p.Y396Y 0.37 TCGA-DK-AA76-01 3 37100312 37100312 A T LRRFIP2 Missense_Mutation p.N613K 0.46 deleterious(0) probably_damaging(0.954) TCGA-DK-AA76-01 3 45988353 45988353 G A CXCR6 Missense_Mutation p.R127H 0.03 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 3 49770250 49770250 G A IP6K1 Missense_Mutation p.S197F 0.35 deleterious(0) probably_damaging(0.998) TCGA-DK-AA76-01 3 49935619 49935619 C G MST1R Missense_Mutation p.R582T 0.47 deleterious(0.04) probably_damaging(0.982) TCGA-DK-AA76-01 3 52430897 52430897 C T DNAH1 Missense_Mutation p.T3875M 0.28 possibly_damaging(0.832) TCGA-DK-AA76-01 3 69057643 69057643 C T EOGT Missense_Mutation p.E83K 0.32 deleterious(0) probably_damaging(0.966) TCGA-DK-AA76-01 4 118975862 118975862 G A NDST3 Missense_Mutation p.G266E 0.74 deleterious(0) possibly_damaging(0.806) TCGA-DK-AA76-01 4 160267979 160267979 G A RAPGEF2 Missense_Mutation p.E1020K 0.17 tolerated(0.09) benign(0.043) TCGA-DK-AA76-01 4 166235285 166235285 G T KLHL2 Missense_Mutation p.V530F 0.42 deleterious(0) probably_damaging(0.988) TCGA-DK-AA76-01 4 2181106 2181106 C G POLN Missense_Mutation p.E370Q 0.26 tolerated(0.54) benign(0.007) TCGA-DK-AA76-01 4 46930375 46930375 G A GABRA4 Missense_Mutation p.S511F 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-DK-AA76-01 4 95506869 95506869 G A PDLIM5 Silent p.Q185Q 0.34 TCGA-DK-AA76-01 4 96222874 96222874 C G UNC5C Missense_Mutation p.E125Q 0.46 tolerated(0.06) benign(0.186) TCGA-DK-AA76-01 5 126705684 126705684 C T MEGF10 Silent p.N134N 0.28 TCGA-DK-AA76-01 5 133726047 133726047 G C UBE2B 3'UTR 0.24 TCGA-DK-AA76-01 5 137536861 137536861 G C CDC23 Missense_Mutation p.H197D 0.44 tolerated(0.1) benign(0.017) TCGA-DK-AA76-01 5 139893047 139893047 G C ANKHD1 Missense_Mutation p.E1434Q 0.39 benign(0.403) TCGA-DK-AA76-01 5 153174257 153174257 G A GRIA1 Missense_Mutation p.D793N 0.43 tolerated(0.05) probably_damaging(1) TCGA-DK-AA76-01 5 176562585 176562585 G A NSD1 Missense_Mutation p.D161N 0.38 deleterious_low_confidence(0) benign(0.002) TCGA-DK-AA76-01 5 180668545 180668545 C G GNB2L1 Missense_Mutation p.D126H 0.15 deleterious(0.01) possibly_damaging(0.827) TCGA-DK-AA76-01 5 33658379 33658379 G A ADAMTS12 Missense_Mutation p.S367L 0.44 deleterious(0.01) possibly_damaging(0.558) TCGA-DK-AA76-01 5 70806805 70806805 G A BDP1 Missense_Mutation p.E1296K 0.25 deleterious(0.01) possibly_damaging(0.779) TCGA-DK-AA76-01 6 106756353 106756353 C T ATG5 Missense_Mutation p.R41K 0.67 deleterious(0.03) probably_damaging(0.917) TCGA-DK-AA76-01 6 132190591 132190591 G A ENPP1 Missense_Mutation p.R456Q 0.35 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 6 13697126 13697126 G T RANBP9 Missense_Mutation p.H192N 0.36 tolerated(0.32) benign(0.22) TCGA-DK-AA76-01 6 137466873 137466873 T C IL22RA2 Missense_Mutation p.E227G 0.45 deleterious(0.01) possibly_damaging(0.67) TCGA-DK-AA76-01 6 138566669 138566669 C G KIAA1244 Silent p.L202L 0.29 TCGA-DK-AA76-01 6 155450771 155450771 C T TIAM2 Silent p.L138L 0.36 TCGA-DK-AA76-01 6 158014053 158014053 G A ZDHHC14 Missense_Mutation p.R147H 0.17 deleterious(0) possibly_damaging(0.707) TCGA-DK-AA76-01 6 158516887 158516887 C G SYNJ2 Missense_Mutation p.L1328V 0.51 tolerated_low_confidence(0.45) benign(0.002) TCGA-DK-AA76-01 6 160482598 160482598 T A IGF2R Missense_Mutation p.V1109D 0.05 deleterious(0) possibly_damaging(0.908) TCGA-DK-AA76-01 6 29342816 29342816 G T OR12D3 Silent p.L83L 0.39 TCGA-DK-AA76-01 6 31905101 31905101 G T CFB Nonsense_Mutation p.E179* 0.31 TCGA-DK-AA76-01 6 32630009 32630009 G T HLA-DQB1 Silent p.T132T 0.15 TCGA-DK-AA76-01 6 33168896 33168896 G A SLC39A7 5'UTR 0.41 TCGA-DK-AA76-01 6 46836738 46836738 C G GPR116 Missense_Mutation p.E501D 0.40 tolerated(0.23) benign(0.072) TCGA-DK-AA76-01 6 46851928 46851928 G C GPR116 Missense_Mutation p.L137V 0.05 tolerated(0.83) benign(0.015) TCGA-DK-AA76-01 6 80741194 80741194 C G TTK Missense_Mutation p.S511C 0.43 deleterious(0.02) benign(0.014) TCGA-DK-AA76-01 6 90491236 90491236 C G MDN1 Missense_Mutation p.E509Q 0.05 benign(0.039) TCGA-DK-AA76-01 7 102036889 102036889 C T PRKRIP1 Missense_Mutation p.P11S 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-DK-AA76-01 7 106921791 106921791 T G COG5 Missense_Mutation p.N541T 0.40 deleterious(0.01) possibly_damaging(0.868) TCGA-DK-AA76-01 7 117828407 117828407 C T NAA38 Nonsense_Mutation p.Q50* 0.18 TCGA-DK-AA76-01 7 128485245 128485245 C A FLNC Silent p.V1242V 0.19 TCGA-DK-AA76-01 7 142566004 142566004 G T EPHB6 Missense_Mutation p.V642L 0.28 tolerated(0.15) benign(0.129) TCGA-DK-AA76-01 7 1538776 1538776 G A INTS1 Silent p.S324S 0.49 TCGA-DK-AA76-01 7 17378626 17378626 G A AHR Missense_Mutation p.E393K 0.29 deleterious(0) benign(0.302) TCGA-DK-AA76-01 7 21941881 21941881 G A CDCA7L 3'UTR 0.51 TCGA-DK-AA76-01 7 27237797 27237797 C T HOXA13 3'UTR 0.40 TCGA-DK-AA76-01 7 37780279 37780279 T G GPR141 Missense_Mutation p.L95R 0.18 deleterious(0) possibly_damaging(0.882) TCGA-DK-AA76-01 7 42005822 42005822 C T GLI3 Missense_Mutation p.R950K 0.45 deleterious(0.02) benign(0.012) TCGA-DK-AA76-01 7 4841585 4841585 C T RADIL Silent p.P847P 0.78 TCGA-DK-AA76-01 7 5567501 5567501 T A ACTB Nonsense_Mutation p.K336* 0.13 TCGA-DK-AA76-01 7 74211666 74211666 C G GTF2IRD2 Missense_Mutation p.E729Q 0.46 tolerated(0.07) possibly_damaging(0.791) TCGA-DK-AA76-01 7 77756562 77756562 G C MAGI2 Missense_Mutation p.H1125Q 0.47 tolerated(0.13) benign(0.014) TCGA-DK-AA76-01 7 91667732 91667732 G A AKAP9 Splice_Site p.X1447_splice 0.47 TCGA-DK-AA76-01 7 99998780 99998780 C A ZCWPW1 Missense_Mutation p.V602F 0.49 tolerated(0.52) benign(0.009) TCGA-DK-AA76-01 8 133187774 133187774 G T KCNQ3 Missense_Mutation p.P287T 0.41 deleterious(0.05) benign(0.438) TCGA-DK-AA76-01 8 144240320 144240320 C T LY6H Silent p.Q50Q 0.43 TCGA-DK-AA76-01 8 36776389 36776389 G T KCNU1 Missense_Mutation p.R857L 0.76 tolerated(0.07) benign(0.046) TCGA-DK-AA76-01 8 52321348 52321348 G A PXDNL Nonsense_Mutation p.R946* 0.27 TCGA-DK-AA76-01 8 65291708 65291708 C G MIR124-2 RNA 0.13 TCGA-DK-AA76-01 8 77764194 77764194 C G ZFHX4 Missense_Mutation p.I1679M 0.63 possibly_damaging(0.506) TCGA-DK-AA76-01 9 119115182 119115182 C T PAPPA Missense_Mutation p.R1388W 0.55 deleterious(0.01) possibly_damaging(0.898) TCGA-DK-AA76-01 9 119461693 119461693 G A TRIM32 Missense_Mutation p.D558N 0.62 tolerated(0.33) benign(0.081) TCGA-DK-AA76-01 9 123737191 123737191 C T C5 Missense_Mutation p.E1295K 0.54 deleterious(0) probably_damaging(0.991) TCGA-DK-AA76-01 9 123904378 123904378 G C CNTRL Missense_Mutation p.D901H 0.70 possibly_damaging(0.897) TCGA-DK-AA76-01 9 130221351 130221351 G T LRSAM1 Splice_Site p.X107_splice 0.24 TCGA-DK-AA76-01 9 133779605 133779605 T G FIBCD1 Missense_Mutation p.Y411S 0.17 deleterious(0) probably_damaging(0.999) TCGA-DK-AA76-01 9 134020058 134020058 G A NUP214 Silent p.V562V 0.10 TCGA-DK-AA76-01 9 134020059 134020059 C T NUP214 Missense_Mutation p.P563S 0.10 possibly_damaging(0.607) TCGA-DK-AA76-01 9 134346361 134346361 C T PRRC2B Missense_Mutation p.H700Y 0.32 deleterious(0.02) probably_damaging(0.995) TCGA-DK-AA76-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.55 deleterious(0) probably_damaging(1) TCGA-DK-AA76-01 9 138387209 138387209 G T C9orf116 3'UTR 0.37 TCGA-DK-AA76-01 9 138557167 138557167 G A LCN9 Silent p.R128R 0.22 TCGA-DK-AA76-01 9 139405106 139405106 G A NOTCH1 Silent p.P913P 0.36 TCGA-DK-AA76-01 9 139927526 139927526 G - C9orf139 Frame_Shift_Del p.G5Vfs*70 0.24 TCGA-DK-AA76-01 9 35853548 35853548 G A TMEM8B Missense_Mutation p.R377H 0.82 deleterious(0.01) possibly_damaging(0.781) TCGA-DK-AA76-01 9 42368525 42368525 C A ANKRD20A2 Silent p.I37I 0.60 TCGA-DK-AA76-01 9 79318837 79318837 C T PRUNE2 Silent p.E2564E 0.16 TCGA-DK-AA76-01 X 10098144 10098144 C T WWC3 Nonsense_Mutation p.Q861* 0.15 TCGA-DK-AA76-01 X 102192238 102192238 G A RAB40AL 5'UTR 0.14 TCGA-DK-AA76-01 X 106034389 106034390 - A RNF128 Frame_Shift_Ins p.T361Dfs*14 0.14 TCGA-DK-AA76-01 X 118587083 118587083 A C SLC25A43 3'UTR 0.17 TCGA-DK-AA76-01 X 151129820 151129820 C T GABRE Missense_Mutation p.G194E 0.20 tolerated(1) possibly_damaging(0.56) TCGA-DK-AA76-01 X 152915712 152915712 C G DUSP9 Missense_Mutation p.F369L 0.37 deleterious(0.02) benign(0.324) TCGA-DK-AA76-01 X 153036250 153036250 A T PLXNB3 Missense_Mutation p.Q706L 0.13 tolerated(0.21) benign(0.005) TCGA-DK-AA76-01 X 153036251 153036251 G T PLXNB3 Missense_Mutation p.Q706H 0.13 tolerated(0.17) benign(0.007) TCGA-DK-AA76-01 X 15307698 15307698 G A ASB11 Nonsense_Mutation p.Q195* 0.32 TCGA-DK-AA76-01 X 15344035 15344035 C G PIGA Splice_Site p.X283_splice 0.36 TCGA-DK-AA76-01 X 18822097 18822097 G C PPEF1 Missense_Mutation p.D385H 0.38 deleterious(0) probably_damaging(0.997) TCGA-DK-AA76-01 X 19764438 19764438 C G SH3KBP1 Missense_Mutation p.R95T 0.51 tolerated(0.07) benign(0.001) TCGA-DK-AA76-01 X 22196454 22196454 C G PHEX Missense_Mutation p.S516C 0.30 deleterious(0) possibly_damaging(0.507) TCGA-DK-AA76-01 X 301594 301594 C T PPP2R3B Silent p.E419E 0.07 TCGA-DK-AA76-01 X 38128983 38128983 T G TM4SF2 Intron 0.64 TCGA-DK-AA76-01 X 41555163 41555163 C T GPR34 Silent p.L93L 0.55 TCGA-DK-AA76-01 X 47045006 47045006 C T RBM10 Nonsense_Mutation p.Q778* 0.78 TCGA-DK-AA76-01 X 54954194 54954194 G A TRO Missense_Mutation p.V620I 0.18 deleterious(0.04) unknown(0) TCGA-DK-AA76-01 X 65242672 65242672 G A VSIG4 Intron 0.34 TCGA-DK-AA76-01 X 73048964 73048964 G A XIST RNA 0.60 TCGA-DK-AA76-01 X 99931127 99931127 T C SYTL4 Silent p.E638E 0.30 TCGA-DK-AA77-01 10 102256137 102256137 C T SEC31B Missense_Mutation p.G730S 0.25 tolerated(0.06) benign(0.04) TCGA-DK-AA77-01 10 114176781 114176781 G T ACSL5 Splice_Site p.X462_splice 0.24 TCGA-DK-AA77-01 10 115381813 115381813 T G NRAP Missense_Mutation p.K862Q 0.38 deleterious(0.02) possibly_damaging(0.697) TCGA-DK-AA77-01 10 116196043 116196043 C G ABLIM1 Missense_Mutation p.M771I 0.40 deleterious(0) benign(0.311) TCGA-DK-AA77-01 10 120796680 120796680 T C EIF3A Silent p.R1290R 0.35 TCGA-DK-AA77-01 10 121259693 121259693 C T RGS10 Missense_Mutation p.E160K 0.47 tolerated(0.74) possibly_damaging(0.46) TCGA-DK-AA77-01 10 124610116 124610116 C T CUZD1 5'UTR 0.75 TCGA-DK-AA77-01 10 125769593 125769593 C T CHST15 3'UTR 0.53 TCGA-DK-AA77-01 10 14881946 14881946 G C HSPA14 Missense_Mutation p.V34L 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-DK-AA77-01 10 18825106 18825106 A C CACNB2 Missense_Mutation p.K428T 0.47 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 10 26505801 26505801 G T GAD2 Missense_Mutation p.E21D 0.31 tolerated_low_confidence(0.56) benign(0.217) TCGA-DK-AA77-01 10 27508695 27508695 T C ACBD5 Silent p.E194E 0.34 TCGA-DK-AA77-01 10 50227764 50227764 G A VSTM4 Silent p.H298H 0.52 TCGA-DK-AA77-01 10 50724609 50724609 C T ERCC6-PGBD3 Silent p.L652L 0.37 TCGA-DK-AA77-01 10 72517847 72517847 G A ADAMTS14 Missense_Mutation p.G1026R 0.17 tolerated(0.39) probably_damaging(0.925) TCGA-DK-AA77-01 10 72531120 72531120 T A TBATA 3'UTR 0.45 TCGA-DK-AA77-01 10 72633206 72633206 C G SGPL1 Missense_Mutation p.I386M 0.40 deleterious(0) possibly_damaging(0.886) TCGA-DK-AA77-01 10 85992088 85992088 C A LRIT1 Missense_Mutation p.L489F 0.42 tolerated(0.05) benign(0.285) TCGA-DK-AA77-01 10 96116342 96116342 T C NOC3L Missense_Mutation p.D172G 0.49 tolerated(0.36) benign(0.001) TCGA-DK-AA77-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.18 TCGA-DK-AA77-01 11 10051357 10051357 A G SBF2 Silent p.I156I 0.33 TCGA-DK-AA77-01 11 101833184 101833184 G A KIAA1377 Missense_Mutation p.R473K 0.56 tolerated(0.55) possibly_damaging(0.544) TCGA-DK-AA77-01 11 107424681 107424681 G C ALKBH8 Missense_Mutation p.Q131E 0.52 tolerated(1) benign(0.002) TCGA-DK-AA77-01 11 113140944 113140944 G A NCAM1 Silent p.G771G 0.32 TCGA-DK-AA77-01 11 119243857 119243857 C T USP2 Missense_Mutation p.G112R 0.32 tolerated_low_confidence(0.11) benign(0.004) TCGA-DK-AA77-01 11 124482883 124482883 G A PANX3 Silent p.P63P 0.51 TCGA-DK-AA77-01 11 128680464 128680464 C T FLI1 Missense_Mutation p.P314S 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 11 128839062 128839062 T A ARHGAP32 Missense_Mutation p.S2002C 0.27 deleterious_low_confidence(0) benign(0.401) TCGA-DK-AA77-01 11 18257455 18257455 T A SAA4 Missense_Mutation p.I7F 0.36 tolerated(0.07) benign(0.427) TCGA-DK-AA77-01 11 45204534 45204534 G T PRDM11 Missense_Mutation p.G116C 0.39 deleterious(0.01) probably_damaging(1) TCGA-DK-AA77-01 11 46920500 46920500 C G LRP4 Missense_Mutation p.D211H 0.46 deleterious(0) probably_damaging(0.993) TCGA-DK-AA77-01 11 4790641 4790641 A G OR51F1 Silent p.Y169Y 0.43 TCGA-DK-AA77-01 11 5444056 5444056 T G OR51Q1 Missense_Mutation p.I209S 0.30 tolerated(0.06) benign(0.41) TCGA-DK-AA77-01 11 55541605 55541605 G A OR5D13 Missense_Mutation p.R231Q 0.45 tolerated(0.13) benign(0.002) TCGA-DK-AA77-01 11 55579845 55579845 C T OR5L1 Silent p.L301L 0.47 TCGA-DK-AA77-01 11 608431 608431 G T PHRF1 Missense_Mutation p.R991L 0.31 tolerated(0.18) possibly_damaging(0.858) TCGA-DK-AA77-01 11 60886392 60886392 C T CD5 Nonsense_Mutation p.Q136* 0.38 TCGA-DK-AA77-01 11 6622662 6622662 G C RRP8 Missense_Mutation p.P212A 0.36 tolerated(0.13) benign(0) TCGA-DK-AA77-01 11 66241314 66241314 C T PELI3 Missense_Mutation p.P253L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-DK-AA77-01 11 67074396 67074396 G A SSH3 Missense_Mutation p.E143K 0.43 deleterious(0) probably_damaging(0.962) TCGA-DK-AA77-01 11 67226239 67226239 C A CABP4 3'UTR 0.50 TCGA-DK-AA77-01 11 6790116 6790116 C T OR2AG2 Missense_Mutation p.E25K 0.43 tolerated(0.84) benign(0.018) TCGA-DK-AA77-01 11 764330 764330 C G TALDO1 Missense_Mutation p.S293C 0.34 deleterious(0.02) benign(0.404) TCGA-DK-AA77-01 11 862609 862609 C T TSPAN4 Silent p.F41F 0.39 TCGA-DK-AA77-01 11 89177332 89177332 C G NOX4 Missense_Mutation p.E140Q 0.23 tolerated(0.44) benign(0.218) TCGA-DK-AA77-01 11 92086562 92086562 G C FAT3 Silent p.L428L 0.12 TCGA-DK-AA77-01 11 92087972 92087972 C T FAT3 Silent p.A898A 0.45 TCGA-DK-AA77-01 12 103271239 103271239 C T PAH Splice_Site p.X147_splice 0.28 TCGA-DK-AA77-01 12 11461464 11461464 C A PRB4 Missense_Mutation p.Q151H 0.32 tolerated_low_confidence(0.16) unknown(0) TCGA-DK-AA77-01 12 117681198 117681198 C G NOS1 Missense_Mutation p.E990Q 0.41 tolerated(0.47) possibly_damaging(0.739) TCGA-DK-AA77-01 12 118199305 118199305 C A KSR2 Missense_Mutation p.W166L 0.34 tolerated(0.41) benign(0.038) TCGA-DK-AA77-01 12 118619412 118619412 C A TAOK3 Missense_Mutation p.V444F 0.48 deleterious(0) possibly_damaging(0.781) TCGA-DK-AA77-01 12 123892237 123892237 G T SETD8 Missense_Mutation p.W349L 0.38 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 12 3031553 3031553 C A TULP3 Missense_Mutation p.R127S 0.07 tolerated(0.74) benign(0.013) TCGA-DK-AA77-01 12 30823979 30823979 G T IPO8 Missense_Mutation p.R321S 0.39 deleterious(0) probably_damaging(0.977) TCGA-DK-AA77-01 12 31132581 31132581 C T TSPAN11 Silent p.A144A 0.46 TCGA-DK-AA77-01 12 39997788 39997788 G A ABCD2 Missense_Mutation p.H476Y 0.43 tolerated(0.09) benign(0.067) TCGA-DK-AA77-01 12 41421765 41421765 A G CNTN1 Silent p.G939G 0.40 TCGA-DK-AA77-01 12 49230416 49230416 C A DDX23 Missense_Mutation p.R391L 0.42 deleterious(0) probably_damaging(0.98) TCGA-DK-AA77-01 12 53088413 53088413 G T KRT77 Silent p.T359T 0.36 TCGA-DK-AA77-01 12 58160878 58160878 C G CYP27B1 5'UTR 0.37 TCGA-DK-AA77-01 12 661328 661328 C T B4GALNT3 Missense_Mutation p.R403W 0.51 deleterious(0) probably_damaging(0.959) TCGA-DK-AA77-01 12 662819 662819 G A B4GALNT3 Missense_Mutation p.R577K 0.41 tolerated(0.82) benign(0.055) TCGA-DK-AA77-01 12 7077580 7077580 C T PHB2 Silent p.R157R 0.27 TCGA-DK-AA77-01 12 80663912 80663912 T A OTOGL Missense_Mutation p.D823E 0.42 tolerated(0.24) benign(0.004) TCGA-DK-AA77-01 13 103279428 103279428 G A TPP2 Missense_Mutation p.G284E 0.25 deleterious(0) probably_damaging(0.981) TCGA-DK-AA77-01 13 113496667 113496667 C T ATP11A Nonsense_Mutation p.R595* 0.42 TCGA-DK-AA77-01 13 25370420 25370420 C T RNF17 Silent p.D462D 0.39 TCGA-DK-AA77-01 13 30104677 30104677 G C SLC7A1 Missense_Mutation p.N234K 0.44 tolerated(0.14) benign(0.021) TCGA-DK-AA77-01 13 33284243 33284243 C T PDS5B Missense_Mutation p.S708L 0.17 deleterious(0.02) possibly_damaging(0.668) TCGA-DK-AA77-01 13 33347433 33347433 A G PDS5B Missense_Mutation p.T1427A 0.41 tolerated_low_confidence(0.47) unknown(0) TCGA-DK-AA77-01 13 35644242 35644242 G C NBEA Missense_Mutation p.Q479H 0.53 deleterious(0.02) probably_damaging(0.998) TCGA-DK-AA77-01 13 38143893 38143893 A T POSTN Missense_Mutation p.L779M 0.35 deleterious_low_confidence(0.02) benign(0.037) TCGA-DK-AA77-01 13 39603432 39603432 A T PROSER1 Silent p.L87L 0.39 TCGA-DK-AA77-01 13 52035366 52035379 GATTTCTCTTCCCT - RPS4XP16 RNA 0.30 TCGA-DK-AA77-01 13 52598686 52598686 T C ALG11 Missense_Mutation p.C274R 0.34 tolerated(0.75) benign(0.001) TCGA-DK-AA77-01 13 76391402 76391402 G A LMO7 Silent p.Q451Q 0.33 TCGA-DK-AA77-01 13 96239912 96239912 G C DZIP1 Missense_Mutation p.P700R 0.38 tolerated(0.26) benign(0.127) TCGA-DK-AA77-01 14 106642028 106642028 C A IGHV1-18 5'UTR 0.22 TCGA-DK-AA77-01 14 24677229 24677229 C A TSSK4 Silent p.I298I 0.28 TCGA-DK-AA77-01 14 24770052 24770052 C T NOP9 Missense_Mutation p.S229F 0.47 tolerated(0.17) possibly_damaging(0.61) TCGA-DK-AA77-01 14 35002683 35002683 A T EAPP Missense_Mutation p.F107I 0.35 deleterious(0.02) benign(0.221) TCGA-DK-AA77-01 14 52496266 52496266 C G NID2 Silent p.V800V 0.44 TCGA-DK-AA77-01 14 55462393 55462393 C A WDHD1 Nonsense_Mutation p.E361* 0.37 TCGA-DK-AA77-01 14 70518827 70518827 C G SLC8A3 Silent p.V637V 0.40 TCGA-DK-AA77-01 14 70633486 70633486 C G SLC8A3 Missense_Mutation p.V552L 0.29 deleterious(0) probably_damaging(0.93) TCGA-DK-AA77-01 14 75365129 75365129 C G DLST Silent p.L276L 0.42 TCGA-DK-AA77-01 14 77909469 77909469 C G VIPAS39 Silent p.L208L 0.44 TCGA-DK-AA77-01 14 91367076 91367076 T A RPS6KA5 Missense_Mutation p.Y375F 0.50 tolerated(0.09) probably_damaging(0.969) TCGA-DK-AA77-01 14 93299599 93299599 C T GOLGA5 Nonsense_Mutation p.Q618* 0.41 TCGA-DK-AA77-01 14 93673206 93673206 C A C14orf142 Silent p.R59R 0.52 TCGA-DK-AA77-01 14 94187868 94187868 A G PRIMA1 Silent p.N128N 0.40 TCGA-DK-AA77-01 14 95030140 95030140 C T SERPINA4 Silent p.F107F 0.54 TCGA-DK-AA77-01 15 22369362 22369362 C T OR4M2 Missense_Mutation p.P263S 0.13 deleterious(0.01) probably_damaging(1) TCGA-DK-AA77-01 15 28202822 28202822 G A OCA2 Missense_Mutation p.R566C 0.41 deleterious(0.01) benign(0.159) TCGA-DK-AA77-01 15 28326881 28326881 G A OCA2 Missense_Mutation p.P47L 0.38 tolerated_low_confidence(0.06) benign(0.002) TCGA-DK-AA77-01 15 31619950 31619950 G C KLF13 Missense_Mutation p.G179R 0.44 deleterious(0) possibly_damaging(0.6) TCGA-DK-AA77-01 15 34553222 34553222 C T SLC12A6 Splice_Site p.X106_splice 0.33 TCGA-DK-AA77-01 15 34628662 34628663 - A SLC12A6 Frame_Shift_Ins p.A74Cfs*7 0.23 TCGA-DK-AA77-01 15 40568155 40568155 G T PAK6 Nonsense_Mutation p.E636* 0.38 TCGA-DK-AA77-01 15 43559036 43559036 A T TGM5 Splice_Site p.X4_splice 0.39 TCGA-DK-AA77-01 15 45464499 45464499 C G SHF Missense_Mutation p.E271Q 0.52 deleterious(0.05) possibly_damaging(0.661) TCGA-DK-AA77-01 15 49575789 49575789 G A GALK2 Silent p.L210L 0.31 TCGA-DK-AA77-01 15 50535051 50535051 A G HDC Silent p.N465N 0.52 TCGA-DK-AA77-01 15 64970530 64970530 C T ZNF609 Silent p.P1206P 0.35 TCGA-DK-AA77-01 15 66794398 66794398 C T RPL4 Intron 0.30 TCGA-DK-AA77-01 15 66844395 66844395 T C LCTL Missense_Mutation p.N437S 0.44 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 15 69079849 69079849 G A ANP32A Missense_Mutation p.S77L 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-DK-AA77-01 15 74630282 74630282 C T CYP11A1 3'UTR 0.43 TCGA-DK-AA77-01 15 81558013 81558013 T - IL16 Frame_Shift_Del p.C146Afs*9 0.22 TCGA-DK-AA77-01 16 19126678 19126678 G T ITPRIPL2 Missense_Mutation p.G299C 0.51 deleterious(0.02) probably_damaging(0.998) TCGA-DK-AA77-01 16 19884083 19884083 C T GPRC5B Missense_Mutation p.E29K 0.30 tolerated(0.3) probably_damaging(0.993) TCGA-DK-AA77-01 16 31484798 31484798 A C TGFB1I1 Missense_Mutation p.H17P 0.24 tolerated(0.23) benign(0.027) TCGA-DK-AA77-01 16 32893854 32893854 C T RP11-989E6.3 5'Flank 0.38 TCGA-DK-AA77-01 16 3487085 3487085 A G ZNF597 Missense_Mutation p.I205T 0.40 tolerated(0.07) benign(0.406) TCGA-DK-AA77-01 16 3739139 3739139 C T TRAP1 Splice_Site p.X83_splice 0.38 TCGA-DK-AA77-01 16 4743763 4743763 C T NUDT16L1 Silent p.I12I 0.45 TCGA-DK-AA77-01 16 51173251 51173251 G A SALL1 Missense_Mutation p.S961F 0.46 tolerated(0.32) possibly_damaging(0.499) TCGA-DK-AA77-01 16 56533779 56533779 G C BBS2 Missense_Mutation p.R480G 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-DK-AA77-01 16 57416169 57416169 C T CX3CL1 Missense_Mutation p.P140L 0.40 tolerated(0.21) benign(0.004) TCGA-DK-AA77-01 16 57468000 57468000 G A CIAPIN1 Missense_Mutation p.S171F 0.42 deleterious(0) benign(0.405) TCGA-DK-AA77-01 16 613562 613562 C A C16orf11 Missense_Mutation p.P90T 0.19 deleterious(0.05) benign(0.167) TCGA-DK-AA77-01 16 64981517 64981517 C T CDH11 Missense_Mutation p.D794N 0.46 tolerated(0.49) benign(0.004) TCGA-DK-AA77-01 16 731957 731957 C G JMJD8 3'UTR 0.49 TCGA-DK-AA77-01 16 77775789 77775789 T A NUDT7 Nonsense_Mutation p.L220* 0.81 TCGA-DK-AA77-01 16 81134814 81134814 C T GCSH 5'Flank 0.35 TCGA-DK-AA77-01 17 20916184 20916184 G A USP22 Silent p.F301F 0.41 TCGA-DK-AA77-01 17 26946683 26946683 A T KIAA0100 Missense_Mutation p.N1877K 0.28 deleterious(0.01) possibly_damaging(0.722) TCGA-DK-AA77-01 17 27013743 27013743 C T SUPT6H Missense_Mutation p.S879F 0.33 tolerated(0.05) benign(0.321) TCGA-DK-AA77-01 17 28749957 28749957 C T CPD Missense_Mutation p.R525W 0.38 deleterious(0) probably_damaging(0.916) TCGA-DK-AA77-01 17 29622443 29622443 T G OMG Missense_Mutation p.I303L 0.47 tolerated(0.81) benign(0.004) TCGA-DK-AA77-01 17 33289084 33289084 G A ZNF830 Missense_Mutation p.E167K 0.50 tolerated(0.34) benign(0.004) TCGA-DK-AA77-01 17 33689787 33689787 C T SLFN11 Nonsense_Mutation p.W347* 0.37 TCGA-DK-AA77-01 17 3514247 3514247 G A SHPK Silent p.S348S 0.43 TCGA-DK-AA77-01 17 37872618 37872618 C G ERBB2 Silent p.T526T 0.42 TCGA-DK-AA77-01 17 39183247 39183247 C T KRTAP1-5 Missense_Mutation p.G54E 0.35 tolerated(0.21) unknown(0) TCGA-DK-AA77-01 17 39919298 39919298 G C JUP Silent p.L478L 0.26 TCGA-DK-AA77-01 17 40070030 40070030 G C ACLY Missense_Mutation p.R33G 0.43 tolerated(0.42) benign(0.053) TCGA-DK-AA77-01 17 45360795 45360795 G A ITGB3 Missense_Mutation p.E81K 0.45 deleterious(0) probably_damaging(0.987) TCGA-DK-AA77-01 17 48629483 48629483 C T SPATA20 Silent p.G633G 0.30 TCGA-DK-AA77-01 17 57049490 57049490 C G PPM1E Intron 0.28 TCGA-DK-AA77-01 17 74527619 74527619 C T CYGB Missense_Mutation p.D100N 0.38 deleterious(0.05) possibly_damaging(0.53) TCGA-DK-AA77-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.89 TCGA-DK-AA77-01 17 77043734 77043734 C A C1QTNF1 Missense_Mutation p.P137H 0.42 deleterious(0) probably_damaging(0.995) TCGA-DK-AA77-01 17 79409871 79409871 C T RP11-1055B8.7 Missense_Mutation p.S499F 0.39 benign(0.136) TCGA-DK-AA77-01 18 12493088 12493088 A C SPIRE1 Missense_Mutation p.I391S 0.19 tolerated(0.24) benign(0.021) TCGA-DK-AA77-01 18 14537799 14537799 C T POTEC Splice_Site p.X270_splice 0.23 TCGA-DK-AA77-01 18 22807300 22807300 C A ZNF521 Missense_Mutation p.K194N 0.53 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 18 29049264 29049264 G C DSG3 Missense_Mutation p.G617R 0.45 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 18 32949291 32949291 C T ZNF396 Missense_Mutation p.R299Q 0.43 deleterious(0.02) benign(0) TCGA-DK-AA77-01 18 33736466 33736466 G A ELP2 Missense_Mutation p.G503E 0.51 deleterious(0) probably_damaging(0.997) TCGA-DK-AA77-01 18 63547908 63547908 G C CDH7 Missense_Mutation p.W712C 0.49 tolerated(0.19) probably_damaging(0.932) TCGA-DK-AA77-01 18 64221673 64221673 G T CDH19 Silent p.G193G 0.56 TCGA-DK-AA77-01 18 77170946 77170946 G T NFATC1 Missense_Mutation p.G211V 0.26 tolerated(0.55) possibly_damaging(0.846) TCGA-DK-AA77-01 19 10244922 10244922 A T DNMT1 Missense_Mutation p.M1612K 0.26 deleterious(0) benign(0.071) TCGA-DK-AA77-01 19 10665769 10665769 C T KRI1 Missense_Mutation p.R598Q 0.38 tolerated(0.67) benign(0.001) TCGA-DK-AA77-01 19 11136104 11136104 G T SMARCA4 Missense_Mutation p.G1030C 0.42 probably_damaging(0.992) TCGA-DK-AA77-01 19 21300057 21300057 G A ZNF714 Missense_Mutation p.G196E 0.43 tolerated(0.16) benign(0.034) TCGA-DK-AA77-01 19 23159301 23159301 C G ZNF728 Missense_Mutation p.G280R 0.39 tolerated(0.07) probably_damaging(0.996) TCGA-DK-AA77-01 19 2991962 2991962 G T TLE6 Nonsense_Mutation p.E456* 0.33 TCGA-DK-AA77-01 19 36898790 36898790 C G ZFP82 Silent p.L45L 0.44 TCGA-DK-AA77-01 19 38200613 38200613 G C ZNF607 Missense_Mutation p.D40E 0.56 tolerated(0.26) benign(0.039) TCGA-DK-AA77-01 19 40023485 40023485 T A EID2B 5'UTR 0.33 TCGA-DK-AA77-01 19 42558534 42558534 G C GRIK5 Missense_Mutation p.L332V 0.40 deleterious(0) possibly_damaging(0.6) TCGA-DK-AA77-01 19 4268712 4268712 C T CCDC94 3'UTR 0.25 TCGA-DK-AA77-01 19 43411302 43411302 G C PSG6 Missense_Mutation p.P338A 0.40 tolerated(0.45) possibly_damaging(0.803) TCGA-DK-AA77-01 19 44778876 44778876 G A ZNF233 3'UTR 0.45 TCGA-DK-AA77-01 19 45655298 45655298 G T NKPD1 Silent p.A799A 0.50 TCGA-DK-AA77-01 19 46002284 46002284 C T PPM1N Missense_Mutation p.A185V 0.25 deleterious(0.01) probably_damaging(0.949) TCGA-DK-AA77-01 19 46915126 46915126 C T CCDC8 Silent p.G314G 0.36 TCGA-DK-AA77-01 19 47588629 47588629 C T ZC3H4 Missense_Mutation p.E305K 0.41 possibly_damaging(0.721) TCGA-DK-AA77-01 19 48259851 48259851 G A GLTSCR2 Missense_Mutation p.E455K 0.36 deleterious(0.05) benign(0.109) TCGA-DK-AA77-01 19 49854574 49854574 T A TEAD2 Silent p.P196P 0.55 TCGA-DK-AA77-01 19 51656336 51656336 C T SIGLEC7 Missense_Mutation p.S413F 0.49 tolerated(0.59) possibly_damaging(0.832) TCGA-DK-AA77-01 19 51742896 51742896 C T CD33 Missense_Mutation p.P350S 0.45 tolerated(0.11) benign(0.401) TCGA-DK-AA77-01 19 52249273 52249273 G T FPR1 Silent p.T325T 0.46 TCGA-DK-AA77-01 19 54314039 54314039 T C NLRP12 Missense_Mutation p.I292V 0.38 tolerated(0.16) benign(0.136) TCGA-DK-AA77-01 19 54625297 54625297 G C PRPF31 Silent p.L99L 0.24 TCGA-DK-AA77-01 19 55451495 55451495 C A NLRP7 Missense_Mutation p.W231L 0.35 tolerated(0.63) benign(0.21) TCGA-DK-AA77-01 19 55493813 55493813 G A NLRP2 Silent p.E249E 0.50 TCGA-DK-AA77-01 19 55697686 55697686 G T PTPRH Silent p.P895P 0.38 TCGA-DK-AA77-01 19 56733475 56733475 G A ZSCAN5A Silent p.G320G 0.30 TCGA-DK-AA77-01 19 57832232 57832232 C A ZNF543 Nonsense_Mutation p.S4* 0.63 TCGA-DK-AA77-01 19 57984626 57984626 G A ZNF772 3'UTR 0.43 TCGA-DK-AA77-01 19 6432151 6432151 G T SLC25A41 Missense_Mutation p.A91D 0.46 deleterious(0) possibly_damaging(0.688) TCGA-DK-AA77-01 19 6754140 6754140 C T SH2D3A Missense_Mutation p.R436Q 0.42 deleterious(0.04) possibly_damaging(0.782) TCGA-DK-AA77-01 19 9084267 9084267 G T MUC16 Silent p.A2516A 0.28 TCGA-DK-AA77-01 1 101339905 101339905 C G EXTL2 Missense_Mutation p.E196Q 0.34 deleterious(0.04) possibly_damaging(0.525) TCGA-DK-AA77-01 1 103468817 103468817 C G COL11A1 Missense_Mutation p.R651P 0.45 unknown(0) TCGA-DK-AA77-01 1 110051490 110051490 C T AMIGO1 Silent p.P15P 0.54 TCGA-DK-AA77-01 1 113010166 113010166 G A WNT2B Missense_Mutation p.D3N 0.40 deleterious_low_confidence(0) unknown(0) TCGA-DK-AA77-01 1 149916953 149916953 G C OTUD7B Silent p.A445A 0.38 TCGA-DK-AA77-01 1 150531014 150531014 T A ADAMTSL4 Missense_Mutation p.D816E 0.45 tolerated(0.07) benign(0.098) TCGA-DK-AA77-01 1 152058703 152058703 G A TCHHL1 Silent p.N485N 0.44 TCGA-DK-AA77-01 1 152283415 152283415 C G FLG Missense_Mutation p.R1316T 0.42 benign(0.227) TCGA-DK-AA77-01 1 152760045 152760045 C T LCE1E Silent p.P90P 0.43 TCGA-DK-AA77-01 1 154233415 154233415 G T UBAP2L Missense_Mutation p.A876S 0.30 tolerated(0.21) possibly_damaging(0.87) TCGA-DK-AA77-01 1 158725625 158725625 G C OR6K6 Missense_Mutation p.W340C 0.37 tolerated(0.2) benign(0.03) TCGA-DK-AA77-01 1 159785474 159785474 C A FCRL6 3'Flank 0.24 TCGA-DK-AA77-01 1 15987647 15987647 A T RSC1A1 Missense_Mutation p.K428N 0.42 tolerated(0.23) benign(0.009) TCGA-DK-AA77-01 1 160593911 160593911 C T SLAMF1 Silent p.V255V 0.37 TCGA-DK-AA77-01 1 161143636 161143636 C G B4GALT3 Intron 0.41 TCGA-DK-AA77-01 1 161681929 161681929 C T FCRLA Silent p.S258S 0.22 TCGA-DK-AA77-01 1 162824668 162824668 C T C1orf110 Missense_Mutation p.E266K 0.35 deleterious(0) possibly_damaging(0.801) TCGA-DK-AA77-01 1 163117198 163117198 G A RGS5 Silent p.A164A 0.38 TCGA-DK-AA77-01 1 166845488 166845488 C A TADA1 5'UTR 0.40 TCGA-DK-AA77-01 1 167023456 167023456 C A GPA33 3'UTR 0.36 TCGA-DK-AA77-01 1 17420158 17420158 C T PADI2 Missense_Mutation p.E145K 0.33 tolerated(0.37) benign(0.008) TCGA-DK-AA77-01 1 176564704 176564704 C A PAPPA2 Missense_Mutation p.T655N 0.52 deleterious(0.04) probably_damaging(0.913) TCGA-DK-AA77-01 1 186008052 186008052 C A HMCN1 Silent p.A1981A 0.52 TCGA-DK-AA77-01 1 192150526 192150526 C T RGS18 Nonsense_Mutation p.Q130* 0.39 TCGA-DK-AA77-01 1 196646771 196646771 G A CFH Nonsense_Mutation p.W198* 0.34 TCGA-DK-AA77-01 1 196928051 196928051 C T CFHR2 Silent p.N218N 0.35 TCGA-DK-AA77-01 1 201754453 201754453 G C NAV1 Silent p.R940R 0.35 TCGA-DK-AA77-01 1 207110689 207110689 C T PIGR Missense_Mutation p.V266M 0.38 tolerated(0.29) benign(0.221) TCGA-DK-AA77-01 1 207718719 207718719 C A CR1 Missense_Mutation p.P768H 0.56 tolerated(0.39) probably_damaging(0.987) TCGA-DK-AA77-01 1 214169818 214169818 G A PROX1 5'UTR 0.30 TCGA-DK-AA77-01 1 221053337 221053337 C T HLX Silent p.I46I 0.38 TCGA-DK-AA77-01 1 228400344 228400344 A G OBSCN Missense_Mutation p.Y287C 0.46 probably_damaging(0.99) TCGA-DK-AA77-01 1 228509678 228509678 G A OBSCN Missense_Mutation p.A6003T 0.62 benign(0.011) TCGA-DK-AA77-01 1 240371474 240371474 C T FMN2 Missense_Mutation p.P1121L 0.37 unknown(0) TCGA-DK-AA77-01 1 247587618 247587618 G A NLRP3 Silent p.V291V 0.33 TCGA-DK-AA77-01 1 247752176 247752176 G A OR2G2 Missense_Mutation p.C172Y 0.50 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 1 29069200 29069200 C T YTHDF2 Nonsense_Mutation p.Q140* 0.41 TCGA-DK-AA77-01 1 35365286 35365286 G T DLGAP3 Missense_Mutation p.S457Y 0.48 deleterious(0.01) possibly_damaging(0.48) TCGA-DK-AA77-01 1 36564602 36564602 G A COL8A2 Missense_Mutation p.P227L 0.56 deleterious(0.04) unknown(0) TCGA-DK-AA77-01 1 3669110 3669110 C A CCDC27 Missense_Mutation p.P22Q 0.48 tolerated_low_confidence(0.13) benign(0.114) TCGA-DK-AA77-01 1 3807550 3807550 C T C1orf174 Silent p.V67V 0.40 TCGA-DK-AA77-01 1 40627071 40627071 G A RLF 5'UTR 0.70 TCGA-DK-AA77-01 1 40702088 40702088 C G RLF Missense_Mutation p.H572D 0.33 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 1 41095025 41095025 G A RIMS3 Silent p.I164I 0.44 TCGA-DK-AA77-01 1 42049047 42049047 G C HIVEP3 Silent p.A474A 0.40 TCGA-DK-AA77-01 1 46751788 46751788 G A LRRC41 Silent p.L247L 0.41 TCGA-DK-AA77-01 1 47534324 47534324 C A CYP4Z1 Missense_Mutation p.H70N 0.41 tolerated(0.5) benign(0.016) TCGA-DK-AA77-01 1 53236801 53236801 C T ZYG11B Silent p.F102F 0.40 TCGA-DK-AA77-01 1 55457523 55457523 T C TMEM61 Missense_Mutation p.V127A 0.42 tolerated(0.82) benign(0.186) TCGA-DK-AA77-01 1 67109286 67109286 A T SGIP1 Nonsense_Mutation p.K115* 0.35 TCGA-DK-AA77-01 1 70790603 70790603 G C ANKRD13C Silent p.V170V 0.42 TCGA-DK-AA77-01 1 75602843 75602843 C T LHX8 Missense_Mutation p.P55L 0.39 deleterious(0) probably_damaging(0.974) TCGA-DK-AA77-01 1 85736431 85736431 T G BCL10 Missense_Mutation p.L72F 0.43 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 1 86252081 86252081 C G COL24A1 Missense_Mutation p.G1339R 0.44 deleterious(0) probably_damaging(0.994) TCGA-DK-AA77-01 1 91178119 91178119 G C BARHL2 Missense_Mutation p.S305W 0.19 deleterious(0) unknown(0) TCGA-DK-AA77-01 1 92846350 92846350 C T RPAP2 Silent p.T586T 0.40 TCGA-DK-AA77-01 1 9323765 9323765 G T H6PD Missense_Mutation p.G405C 0.38 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 1 94016644 94016644 C G FNBP1L Missense_Mutation p.L598V 0.37 deleterious(0.02) possibly_damaging(0.764) TCGA-DK-AA77-01 1 94017940 94017940 C G FNBP1L Intron 0.35 TCGA-DK-AA77-01 1 94018154 94018154 C T FNBP1L 3'UTR 0.38 TCGA-DK-AA77-01 1 97272445 97272445 G T PTBP2 Missense_Mutation p.V368L 0.39 deleterious(0) benign(0.201) TCGA-DK-AA77-01 1 99150515 99150515 C G SNX7 Missense_Mutation p.I85M 0.44 deleterious(0.03) benign(0.301) TCGA-DK-AA77-01 20 1551753 1551753 G T SIRPB1 Missense_Mutation p.P261H 0.40 deleterious(0.03) benign(0.013) TCGA-DK-AA77-01 20 16506813 16506813 C T KIF16B Missense_Mutation p.R52Q 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA77-01 20 17339073 17339073 G A PCSK2 Silent p.K128K 0.37 TCGA-DK-AA77-01 20 18440834 18440834 C T DZANK1 Missense_Mutation p.D76N 0.53 tolerated(0.26) benign(0.139) TCGA-DK-AA77-01 20 30450436 30450436 C T DUSP15 Missense_Mutation p.A125T 0.37 deleterious(0) possibly_damaging(0.772) TCGA-DK-AA77-01 20 33834679 33834679 G T MMP24 Missense_Mutation p.D95Y 0.40 deleterious(0) possibly_damaging(0.776) TCGA-DK-AA77-01 20 37177331 37177331 G A RALGAPB Splice_Site p.X968_splice 0.44 TCGA-DK-AA77-01 20 44806621 44806621 G T CDH22 Missense_Mutation p.L627I 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-DK-AA77-01 20 47244452 47244452 G T PREX1 Missense_Mutation p.H1606N 0.28 deleterious(0) probably_damaging(0.996) TCGA-DK-AA77-01 20 49181508 49181508 G C PTPN1 Missense_Mutation p.D53H 0.35 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 20 62236233 62236233 C G GMEB2 Intron 0.56 TCGA-DK-AA77-01 21 31654540 31654540 G A KRTAP24-1 Silent p.T237T 0.43 TCGA-DK-AA77-01 21 38520855 38520855 C T TTC3 Missense_Mutation p.R676C 0.41 deleterious(0) probably_damaging(0.987) TCGA-DK-AA77-01 21 41416042 41416042 C A DSCAM Missense_Mutation p.E1782D 0.33 deleterious(0) probably_damaging(0.986) TCGA-DK-AA77-01 21 43413217 43413217 C T ZBTB21 Missense_Mutation p.D330N 0.35 deleterious(0.01) probably_damaging(1) TCGA-DK-AA77-01 22 21101956 21101956 C A PI4KA Missense_Mutation p.G1093V 0.27 deleterious(0.05) benign(0.41) TCGA-DK-AA77-01 22 21800937 21800937 G T HIC2 Missense_Mutation p.G585C 0.36 deleterious(0) probably_damaging(0.995) TCGA-DK-AA77-01 22 29091789 29091789 A T CHEK2 Missense_Mutation p.Y433N 0.59 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 22 29442753 29442753 G A ZNRF3 Missense_Mutation p.R265K 0.26 tolerated(0.08) benign(0.077) TCGA-DK-AA77-01 22 29913051 29913051 G C THOC5 Missense_Mutation p.L550V 0.27 tolerated(0.1) benign(0.005) TCGA-DK-AA77-01 22 32880011 32880011 C T FBXO7 Missense_Mutation p.S182L 0.27 deleterious(0.01) benign(0.044) TCGA-DK-AA77-01 22 36745234 36745234 G A MYH9 Silent p.F16F 0.31 TCGA-DK-AA77-01 22 38692654 38692654 G A CSNK1E Intron 0.22 TCGA-DK-AA77-01 22 39067025 39067025 C A CBY1 Intron 0.47 TCGA-DK-AA77-01 22 39966884 39966884 G A CACNA1I Missense_Mutation p.D43N 0.58 tolerated_low_confidence(0.14) probably_damaging(0.916) TCGA-DK-AA77-01 22 40814826 40814826 C T MKL1 Missense_Mutation p.R539H 0.12 deleterious(0) probably_damaging(0.984) TCGA-DK-AA77-01 22 41543840 41543840 G A EP300 Splice_Site p.X711_splice 0.53 TCGA-DK-AA77-01 22 42910251 42910251 C A RRP7A Silent p.V206V 0.47 TCGA-DK-AA77-01 22 43996028 43996028 C T EFCAB6 Missense_Mutation p.G933S 0.27 deleterious(0.01) probably_damaging(1) TCGA-DK-AA77-01 22 46654036 46654036 G A PKDREJ Silent p.I1728I 0.27 TCGA-DK-AA77-01 22 51207205 51207205 C G RABL2B Nonstop_Mutation p.*239Sext*23 0.25 TCGA-DK-AA77-01 2 128238585 128238585 C T IWS1 3'UTR 0.73 TCGA-DK-AA77-01 2 141243024 141243024 C T LRP1B Missense_Mutation p.D3105N 0.78 possibly_damaging(0.539) TCGA-DK-AA77-01 2 141777529 141777529 C T LRP1B Missense_Mutation p.M644I 0.71 benign(0.072) TCGA-DK-AA77-01 2 152301928 152301928 A G RIF1 Missense_Mutation p.N688S 0.70 tolerated(0.74) benign(0.009) TCGA-DK-AA77-01 2 172602338 172602338 G T DYNC1I2 Missense_Mutation p.E568D 0.73 tolerated(0.65) benign(0.001) TCGA-DK-AA77-01 2 179468741 179468741 C G TTN Missense_Mutation p.G18225R 0.69 TCGA-DK-AA77-01 2 179584713 179584713 G A TTN Silent p.L7886L 0.53 TCGA-DK-AA77-01 2 202436664 202436664 G A ALS2CR11 Missense_Mutation p.T278I 0.74 deleterious(0.04) benign(0.046) TCGA-DK-AA77-01 2 207509344 207509344 G T AC010731.4 RNA 0.71 TCGA-DK-AA77-01 2 219507500 219507500 G A ZNF142 Missense_Mutation p.R1247W 0.79 deleterious(0.01) possibly_damaging(0.898) TCGA-DK-AA77-01 2 220406416 220406416 G A CHPF Silent p.I270I 0.73 TCGA-DK-AA77-01 2 24042692 24042692 G T ATAD2B Missense_Mutation p.T731N 0.39 tolerated(0.61) benign(0.003) TCGA-DK-AA77-01 2 26950782 26950782 C A KCNK3 Silent p.A177A 0.41 TCGA-DK-AA77-01 2 29543681 29543681 C T ALK Silent p.L494L 0.39 TCGA-DK-AA77-01 2 42990265 42990265 G T OXER1 Missense_Mutation p.P352H 0.44 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 2 43452269 43452269 G T ZFP36L2 Missense_Mutation p.P225Q 0.33 deleterious(0.04) probably_damaging(0.965) TCGA-DK-AA77-01 2 50280507 50280507 G C NRXN1 Missense_Mutation p.Q1384E 0.61 tolerated(0.62) benign(0.089) TCGA-DK-AA77-01 2 55563864 55563864 G A CCDC88A Nonsense_Mutation p.Q537* 0.16 TCGA-DK-AA77-01 2 64863245 64863245 G C SERTAD2 Missense_Mutation p.S254C 0.26 deleterious(0) probably_damaging(0.998) TCGA-DK-AA77-01 2 69734578 69734578 G C AAK1 Missense_Mutation p.N713K 0.53 deleterious(0) possibly_damaging(0.866) TCGA-DK-AA77-01 2 6991641 6991641 C A CMPK2 Missense_Mutation p.R389L 0.43 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 2 73470135 73470135 G A CCT7 Missense_Mutation p.G91S 0.64 deleterious(0) probably_damaging(0.979) TCGA-DK-AA77-01 2 89544332 89544332 G A IGKV2-30 Silent p.L98L 0.23 TCGA-DK-AA77-01 3 108175710 108175710 C T MYH15 Missense_Mutation p.V701I 0.36 tolerated(0.1) benign(0.022) TCGA-DK-AA77-01 3 113304082 113304082 G A SIDT1 Silent p.L322L 0.32 TCGA-DK-AA77-01 3 114069470 114069470 G A ZBTB20 Silent p.S485S 0.41 TCGA-DK-AA77-01 3 119306538 119306538 C A ADPRH Missense_Mutation p.A296D 0.41 deleterious(0) probably_damaging(0.981) TCGA-DK-AA77-01 3 120393837 120393837 C T HGD Splice_Site p.X30_splice 0.44 TCGA-DK-AA77-01 3 121377157 121377157 G T HCLS1 Missense_Mutation p.S13Y 0.36 deleterious(0.01) possibly_damaging(0.608) TCGA-DK-AA77-01 3 121416268 121416268 G A GOLGB1 Silent p.L1034L 0.43 TCGA-DK-AA77-01 3 122634453 122634453 G T SEMA5B Silent p.R662R 0.29 TCGA-DK-AA77-01 3 128982798 128982798 C T COPG1 Missense_Mutation p.H394Y 0.31 tolerated(0.3) benign(0.123) TCGA-DK-AA77-01 3 130748658 130748658 G T NEK11 Missense_Mutation p.G36C 0.35 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 3 136240106 136240106 C A STAG1 Missense_Mutation p.G209C 0.45 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 3 148614344 148614344 C T CPA3 Silent p.D368D 0.42 TCGA-DK-AA77-01 3 164786983 164786983 C T SI Missense_Mutation p.G86R 0.29 tolerated(0.25) benign(0.006) TCGA-DK-AA77-01 3 165504007 165504007 C T BCHE Missense_Mutation p.R537K 0.42 tolerated(1) benign(0.002) TCGA-DK-AA77-01 3 165548516 165548516 T A BCHE Silent p.P102P 0.46 TCGA-DK-AA77-01 3 176771707 176771707 C T TBL1XR1 Splice_Site p.X20_splice 0.28 TCGA-DK-AA77-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.46 deleterious(0.02) probably_damaging(0.959) TCGA-DK-AA77-01 3 179605503 179605503 T C PEX5L Missense_Mutation p.K90E 0.37 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-DK-AA77-01 3 186333481 186333481 C T AHSG Missense_Mutation p.S74F 0.39 tolerated(0.45) benign(0.001) TCGA-DK-AA77-01 3 186370229 186370229 C A FETUB Missense_Mutation p.P320T 0.42 deleterious(0.02) possibly_damaging(0.461) TCGA-DK-AA77-01 3 195515879 195515879 G T MUC4 Missense_Mutation p.P858T 0.40 unknown(0) TCGA-DK-AA77-01 3 19554546 19554546 G A KCNH8 Missense_Mutation p.E722K 0.32 tolerated(0.63) benign(0.293) TCGA-DK-AA77-01 3 197707328 197707328 C T LMLN Silent p.N227N 0.41 TCGA-DK-AA77-01 3 27161305 27161305 G T NEK10 Missense_Mutation p.H1103N 0.32 tolerated(0.33) benign(0.006) TCGA-DK-AA77-01 3 27233522 27233522 G A NEK10 Missense_Mutation p.H835Y 0.32 tolerated(0.06) benign(0.01) TCGA-DK-AA77-01 3 36898302 36898302 G A TRANK1 Missense_Mutation p.R927W 0.35 deleterious(0) probably_damaging(0.981) TCGA-DK-AA77-01 3 43122369 43122369 C A POMGNT2 Silent p.L185L 0.41 TCGA-DK-AA77-01 3 44541713 44541713 G A ZNF852 Missense_Mutation p.P186S 0.30 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 3 47619228 47619228 G A CSPG5 Silent p.T96T 0.72 TCGA-DK-AA77-01 3 49933259 49933259 C A MST1R Missense_Mutation p.D951Y 0.81 deleterious(0.02) benign(0.212) TCGA-DK-AA77-01 3 51694089 51694089 A G RAD54L2 Missense_Mutation p.T1122A 0.73 tolerated(1) benign(0.003) TCGA-DK-AA77-01 3 97888069 97888069 C T OR5H15 Missense_Mutation p.H176Y 0.37 tolerated(0.19) probably_damaging(0.995) TCGA-DK-AA77-01 4 100205900 100205900 G A ADH1A Missense_Mutation p.P107L 0.11 deleterious(0.02) probably_damaging(0.961) TCGA-DK-AA77-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.33 deleterious(0.01) possibly_damaging(0.594) TCGA-DK-AA77-01 4 183603148 183603148 T A TENM3 Silent p.T672T 0.71 TCGA-DK-AA77-01 4 186382259 186382259 G C CCDC110 Missense_Mutation p.P98A 0.71 deleterious(0) probably_damaging(0.913) TCGA-DK-AA77-01 4 187073128 187073128 G A FAM149A Silent p.G5G 0.73 TCGA-DK-AA77-01 4 24558034 24558034 C T DHX15 Splice_Site p.X234_splice 0.40 TCGA-DK-AA77-01 4 31144247 31144247 G A PCDH7 Missense_Mutation p.E1182K 0.38 tolerated(0.07) benign(0.163) TCGA-DK-AA77-01 4 39290401 39290401 C T RFC1 Missense_Mutation p.G1143R 0.40 tolerated_low_confidence(0.1) benign(0.106) TCGA-DK-AA77-01 4 41664978 41664978 G A LIMCH1 Missense_Mutation p.V705M 0.31 tolerated(0.07) possibly_damaging(0.729) TCGA-DK-AA77-01 4 5743500 5743500 G A EVC Missense_Mutation p.D254N 0.19 tolerated(0.13) benign(0.015) TCGA-DK-AA77-01 4 5966785 5966785 C A C4orf50 Missense_Mutation p.W656L 0.44 deleterious(0.03) possibly_damaging(0.648) TCGA-DK-AA77-01 4 62863951 62863951 G A LPHN3 Silent p.L1053L 0.41 TCGA-DK-AA77-01 4 74277834 74277834 G A ALB Missense_Mutation p.D279N 0.40 deleterious(0.03) possibly_damaging(0.855) TCGA-DK-AA77-01 4 8009720 8009720 C T ABLIM2 Intron 0.57 TCGA-DK-AA77-01 4 82074823 82074823 G C PRKG2 Missense_Mutation p.T322S 0.30 tolerated(0.08) probably_damaging(0.996) TCGA-DK-AA77-01 4 89198394 89198394 C T PPM1K Missense_Mutation p.D148N 0.45 tolerated(0.33) benign(0.001) TCGA-DK-AA77-01 5 11082893 11082893 G T CTNND2 Silent p.L901L 0.31 TCGA-DK-AA77-01 5 111071200 111071200 T G NREP Missense_Mutation p.Y47S 0.46 deleterious(0.03) benign(0.191) TCGA-DK-AA77-01 5 1225653 1225653 T A SLC6A18 Missense_Mutation p.W21R 0.24 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 5 13841977 13841977 C A DNAH5 Missense_Mutation p.G1770C 0.45 probably_damaging(0.991) TCGA-DK-AA77-01 5 13867959 13867959 C T DNAH5 Missense_Mutation p.S1326N 0.45 benign(0.001) TCGA-DK-AA77-01 5 140041539 140041539 A T IK Nonsense_Mutation p.K520* 0.58 TCGA-DK-AA77-01 5 140222471 140222471 C T PCDHA8 Missense_Mutation p.P522L 0.41 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-DK-AA77-01 5 140228620 140228620 G T PCDHA9 Silent p.L180L 0.24 TCGA-DK-AA77-01 5 140531064 140531064 G A PCDHB6 Missense_Mutation p.R409K 0.49 deleterious(0.01) possibly_damaging(0.723) TCGA-DK-AA77-01 5 140616244 140616244 C G PCDHB18 RNA 0.29 TCGA-DK-AA77-01 5 140720804 140720804 G T PCDHGA2 Nonsense_Mutation p.E756* 0.42 TCGA-DK-AA77-01 5 140783887 140783887 C T PCDHGA9 Silent p.S456S 0.26 TCGA-DK-AA77-01 5 140810374 140810374 G A PCDHGA12 Silent p.L16L 0.52 TCGA-DK-AA77-01 5 141305009 141305009 C T KIAA0141 Missense_Mutation p.P61S 0.14 tolerated(0.12) possibly_damaging(0.798) TCGA-DK-AA77-01 5 148747747 148747747 G T PCYOX1L Missense_Mutation p.G339C 0.45 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 5 149435631 149435631 C T CSF1R Missense_Mutation p.V838I 0.44 deleterious(0) possibly_damaging(0.562) TCGA-DK-AA77-01 5 149514572 149514572 G C PDGFRB Silent p.T124T 0.43 TCGA-DK-AA77-01 5 149515223 149515223 G T PDGFRB Missense_Mutation p.L87M 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-DK-AA77-01 5 150891748 150891748 C T FAT2 Silent p.K3961K 0.34 TCGA-DK-AA77-01 5 154287153 154287153 G A GEMIN5 Missense_Mutation p.A798V 0.50 tolerated(0.4) benign(0.001) TCGA-DK-AA77-01 5 156381657 156381657 C T TIMD4 Missense_Mutation p.D57N 0.33 deleterious(0.01) benign(0.396) TCGA-DK-AA77-01 5 156747763 156747763 T C CYFIP2 Missense_Mutation p.F516L 0.65 tolerated(0.14) benign(0.033) TCGA-DK-AA77-01 5 158139285 158139285 G A EBF1 Missense_Mutation p.P476S 0.43 tolerated_low_confidence(0.13) benign(0.151) TCGA-DK-AA77-01 5 158585673 158585673 C T RNF145 3'UTR 0.30 TCGA-DK-AA77-01 5 161324380 161324380 G T GABRA1 Silent p.T441T 0.44 TCGA-DK-AA77-01 5 161576284 161576284 C T GABRG2 Missense_Mutation p.P405S 0.45 tolerated(0.14) possibly_damaging(0.767) TCGA-DK-AA77-01 5 41381993 41381993 C A PLCXD3 Silent p.L249L 0.47 TCGA-DK-AA77-01 5 80338777 80338777 T A RASGRF2 Missense_Mutation p.W124R 0.23 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 5 82868379 82868379 G T VCAN Missense_Mutation p.V3294F 0.32 deleterious(0.01) possibly_damaging(0.648) TCGA-DK-AA77-01 6 101312009 101312009 G A ASCC3 Silent p.L58L 0.36 TCGA-DK-AA77-01 6 110777996 110777996 C T SLC22A16 Missense_Mutation p.G93D 0.40 deleterious(0) probably_damaging(1) TCGA-DK-AA77-01 6 111694065 111694065 G A REV3L Silent p.D1831D 0.36 TCGA-DK-AA77-01 6 130505769 130505769 C T SAMD3 Splice_Site p.X128_splice 0.52 TCGA-DK-AA77-01 6 143074176 143074176 C T HIVEP2 3'UTR 0.42 TCGA-DK-AA77-01 6 146264805 146264805 C T SHPRH Missense_Mutation p.R571K 0.31 tolerated_low_confidence(0.7) benign(0.002) TCGA-DK-AA77-01 6 146755679 146755679 A T GRM1 Missense_Mutation p.Y1111F 0.33 tolerated_low_confidence(0.18) benign(0.008) TCGA-DK-AA77-01 6 158919734 158919734 C T TULP4 Missense_Mutation p.P635L 0.41 deleterious(0.01) possibly_damaging(0.647) TCGA-DK-AA77-01 6 161528979 161528979 G A MAP3K4 Missense_Mutation p.G1366E 0.48 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 6 161574425 161574425 G A AGPAT4 Missense_Mutation p.P206L 0.42 deleterious(0) possibly_damaging(0.834) TCGA-DK-AA77-01 6 25915986 25915986 C T SLC17A2 Silent p.V347V 0.44 TCGA-DK-AA77-01 6 26502084 26502084 G A BTN1A1 Missense_Mutation p.V116I 0.29 deleterious(0.01) benign(0.018) TCGA-DK-AA77-01 6 31110819 31110819 C T CCHCR1 Silent p.V804V 0.43 TCGA-DK-AA77-01 6 32029473 32029473 G A TNXB Missense_Mutation p.P2398L 0.41 benign(0.002) TCGA-DK-AA77-01 6 33255417 33255417 G A WDR46 Silent p.N234N 0.42 TCGA-DK-AA77-01 6 3850646 3850646 G A FAM50B Missense_Mutation p.V201M 0.52 deleterious(0.02) possibly_damaging(0.648) TCGA-DK-AA77-01 6 38697703 38697703 C T DNAH8 Intron 0.36 TCGA-DK-AA77-01 6 38718329 38718329 G T DNAH8 Missense_Mutation p.L240F 0.49 probably_damaging(1) TCGA-DK-AA77-01 6 38883066 38883066 G A DNAH8 Silent p.V3134V 0.49 TCGA-DK-AA77-01 6 41774068 41774068 G A USP49 Silent p.D218D 0.44 TCGA-DK-AA77-01 6 51612615 51612615 G T PKHD1 Missense_Mutation p.H3267N 0.37 tolerated(0.34) benign(0.184) TCGA-DK-AA77-01 6 56350149 56350149 T G DST Silent p.G4433G 0.43 TCGA-DK-AA77-01 6 66063389 66063389 G A EYS Missense_Mutation p.P474L 0.45 tolerated(0.35) benign(0.018) TCGA-DK-AA77-01 6 73902406 73902406 G C KCNQ5 Missense_Mutation p.E629Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 6 74072859 74072859 C T KHDC3L Nonsense_Mutation p.Q71* 0.48 TCGA-DK-AA77-01 6 74407159 74407159 G T CD109 Missense_Mutation p.R37S 0.53 deleterious(0.01) probably_damaging(0.954) TCGA-DK-AA77-01 6 75799828 75799828 C T COL12A1 Missense_Mutation p.R2980Q 0.47 probably_damaging(0.997) TCGA-DK-AA77-01 6 76572378 76572378 C A MYO6 Missense_Mutation p.P538T 0.49 deleterious(0.02) unknown(0) TCGA-DK-AA77-01 7 100355847 100355847 C T ZAN Missense_Mutation p.P1111L 0.34 unknown(0) TCGA-DK-AA77-01 7 100679551 100679551 T C MUC17 Silent p.G1618G 0.34 TCGA-DK-AA77-01 7 107414461 107414461 G C SLC26A3 Silent p.L637L 0.35 TCGA-DK-AA77-01 7 124467277 124467277 G T POT1 Silent p.L559L 0.16 TCGA-DK-AA77-01 7 128446741 128446741 G A CCDC136 Splice_Site p.X417_splice 0.19 TCGA-DK-AA77-01 7 134261150 134261150 A G AKR1B15 Missense_Mutation p.I265V 0.30 tolerated(0.06) possibly_damaging(0.609) TCGA-DK-AA77-01 7 137363351 137363351 C A DGKI Silent p.S186S 0.33 TCGA-DK-AA77-01 7 142459791 142459791 G A PRSS1 Missense_Mutation p.V123M 0.58 deleterious(0) probably_damaging(0.987) TCGA-DK-AA77-01 7 14741346 14741346 C A DGKB Missense_Mutation p.R159L 0.54 tolerated(0.05) probably_damaging(0.993) TCGA-DK-AA77-01 7 150707369 150707369 C T NOS3 Silent p.L893L 0.24 TCGA-DK-AA77-01 7 151927082 151927082 G T KMT2C Missense_Mutation p.Q968K 0.09 benign(0.074) TCGA-DK-AA77-01 7 154379701 154379701 C G DPP6 Intron 0.49 TCGA-DK-AA77-01 7 156556460 156556460 C G LMBR1 Missense_Mutation p.L151F 0.17 tolerated(0.66) benign(0.009) TCGA-DK-AA77-01 7 157175005 157175005 G A DNAJB6 Missense_Mutation p.G138R 0.19 tolerated(0.15) probably_damaging(0.953) TCGA-DK-AA77-01 7 16705105 16705105 C T BZW2 Missense_Mutation p.R13W 0.06 deleterious(0) benign(0.013) TCGA-DK-AA77-01 7 32598686 32598686 A G AVL9 Silent p.G275G 0.72 TCGA-DK-AA77-01 7 44578609 44578609 G A NPC1L1 Missense_Mutation p.R463C 0.80 deleterious(0) probably_damaging(0.943) TCGA-DK-AA77-01 7 55266489 55266489 G A EGFR Silent p.L927L 0.73 TCGA-DK-AA77-01 7 70255158 70255158 C A AUTS2 Silent p.R986R 0.29 TCGA-DK-AA77-01 7 72856825 72856825 C T BAZ1B Missense_Mutation p.D1385N 0.43 deleterious(0.01) probably_damaging(1) TCGA-DK-AA77-01 7 76132904 76132904 G A DTX2 Silent p.Q517Q 0.57 TCGA-DK-AA77-01 7 81746357 81746357 T A CACNA2D1 Intron 0.52 TCGA-DK-AA77-01 7 82580363 82580363 C A PCLO Missense_Mutation p.V3181F 0.38 unknown(0) TCGA-DK-AA77-01 7 87144575 87144575 C T ABCB1 Missense_Mutation p.R1085Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA77-01 7 92158178 92158178 G C RBM48 Missense_Mutation p.Q17H 0.70 deleterious(0) possibly_damaging(0.625) TCGA-DK-AA77-01 7 97766632 97766632 G T LMTK2 Missense_Mutation p.A37S 0.26 tolerated(0.12) benign(0.038) TCGA-DK-AA77-01 7 98951613 98951613 G A ARPC1A Silent p.L194L 0.36 TCGA-DK-AA77-01 7 99227275 99227275 C T ZSCAN25 Missense_Mutation p.R423C 0.25 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 7 99768080 99768080 C A GPC2 Nonsense_Mutation p.G505* 0.32 TCGA-DK-AA77-01 8 121382697 121382697 C A COL14A1 Intron 0.25 TCGA-DK-AA77-01 8 125335562 125335562 C G TMEM65 Missense_Mutation p.A158P 0.23 deleterious(0) probably_damaging(0.988) TCGA-DK-AA77-01 8 140715038 140715038 G A KCNK9 Silent p.I66I 0.44 TCGA-DK-AA77-01 8 140922408 140922408 C T TRAPPC9 Missense_Mutation p.G1081S 0.57 tolerated(0.37) benign(0.092) TCGA-DK-AA77-01 8 142446017 142446017 G A PTP4A3 3'Flank 0.44 TCGA-DK-AA77-01 8 144944015 144944015 G T EPPK1 Missense_Mutation p.P1136Q 0.42 benign(0.013) TCGA-DK-AA77-01 8 145268181 145268181 G C MROH1 Intron 0.44 TCGA-DK-AA77-01 8 27634165 27634165 G A ESCO2 Missense_Mutation p.D114N 0.76 tolerated(1) benign(0) TCGA-DK-AA77-01 8 2855670 2855670 C A CSMD1 Missense_Mutation p.G2747V 0.67 probably_damaging(1) TCGA-DK-AA77-01 8 43152495 43152495 C T POTEA RNA 0.63 TCGA-DK-AA77-01 8 7343905 7343905 G A DEFB106B 5'UTR 0.55 TCGA-DK-AA77-01 8 77618301 77618301 G A ZFHX4 Missense_Mutation p.E660K 0.36 possibly_damaging(0.486) TCGA-DK-AA77-01 8 86250649 86250649 T A CA1 Missense_Mutation p.I23F 0.53 deleterious(0.04) probably_damaging(0.954) TCGA-DK-AA77-01 8 8654980 8654980 C T MFHAS1 Missense_Mutation p.R1007K 0.70 tolerated(0.17) benign(0.15) TCGA-DK-AA77-01 8 99962928 99962928 G A OSR2 Missense_Mutation p.G234E 0.27 deleterious(0) benign(0.003) TCGA-DK-AA77-01 9 111741695 111741695 C T CTNNAL1 Missense_Mutation p.E323K 0.79 deleterious(0.03) benign(0.031) TCGA-DK-AA77-01 9 114860811 114860811 C T SUSD1 Silent p.V471V 0.72 TCGA-DK-AA77-01 9 116176038 116176038 G A C9orf43 Splice_Site p.X51_splice 0.59 TCGA-DK-AA77-01 9 131351141 131351141 C G SPTAN1 Silent p.L975L 0.62 TCGA-DK-AA77-01 9 135447888 135447888 C T C9orf171 Silent p.T318T 0.75 TCGA-DK-AA77-01 9 136226921 136226921 C T SURF2 Missense_Mutation p.R145C 0.70 benign(0.018) TCGA-DK-AA77-01 9 138713227 138713227 C T CAMSAP1 Missense_Mutation p.G1094S 0.83 tolerated(1) benign(0.119) TCGA-DK-AA77-01 9 16436152 16436152 C T BNC2 Silent p.E680E 0.76 TCGA-DK-AA77-01 9 21207097 21207097 T G IFNA10 5'UTR 0.84 TCGA-DK-AA77-01 9 22451890 22451890 C A DMRTA1 Missense_Mutation p.P499T 0.85 tolerated(0.08) benign(0.086) TCGA-DK-AA77-01 9 26935120 26935120 G A PLAA Silent p.D78D 0.36 TCGA-DK-AA77-01 9 27284732 27284732 C A EQTN Missense_Mutation p.V292F 0.34 tolerated_low_confidence(0.06) benign(0.036) TCGA-DK-AA77-01 9 27567010 27567010 G A C9orf72 Missense_Mutation p.L37F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DK-AA77-01 9 32542506 32542506 G T TOPORS Missense_Mutation p.R673S 0.36 tolerated_low_confidence(0.21) unknown(0) TCGA-DK-AA77-01 9 32784397 32784397 C T TMEM215 Silent p.N72N 0.35 TCGA-DK-AA77-01 9 72333403 72333403 C T PTAR1 Missense_Mutation p.R355H 0.77 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-DK-AA77-01 9 74481680 74481680 C T ABHD17B Intron 0.73 TCGA-DK-AA77-01 9 88257795 88257795 C T AGTPBP1 Missense_Mutation p.E377K 0.70 deleterious(0.04) benign(0.35) TCGA-DK-AA77-01 X 101623506 101623506 G A NXF2B Missense_Mutation p.R224W 0.29 deleterious(0) possibly_damaging(0.883) TCGA-DK-AA77-01 X 107433676 107433676 C A COL4A6 Missense_Mutation p.G459C 0.86 probably_damaging(0.965) TCGA-DK-AA77-01 X 140995414 140995414 A T MAGEC1 Missense_Mutation p.S742C 0.77 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-DK-AA77-01 X 142596962 142596962 G T SPANXN3 Silent p.A36A 0.79 TCGA-DK-AA77-01 X 147024795 147024795 A T FMR1 Nonsense_Mutation p.R474* 0.90 TCGA-DK-AA77-01 X 151424301 151424301 G T GABRA3 Missense_Mutation p.P167H 0.77 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 X 37948733 37948733 G A SYTL5 Missense_Mutation p.E242K 0.75 tolerated(0.4) benign(0.003) TCGA-DK-AA77-01 X 44920650 44920650 C T KDM6A Missense_Mutation p.P471S 0.60 deleterious(0.04) possibly_damaging(0.905) TCGA-DK-AA77-01 X 53654791 53654791 A C HUWE1 Missense_Mutation p.F428V 0.82 probably_damaging(0.998) TCGA-DK-AA77-01 X 54069088 54069088 A T PHF8 Missense_Mutation p.M61K 0.79 tolerated(0.2) benign(0.031) TCGA-DK-AA77-01 X 54185805 54185805 A G FAM120C Missense_Mutation p.L315P 0.91 deleterious(0) probably_damaging(0.999) TCGA-DK-AA77-01 X 54840888 54840888 G T MAGED2 Intron 0.80 TCGA-E5-A2PC-01 10 101977825 101977825 C G CHUK Missense_Mutation p.R287T 0.63 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 10 102276737 102276737 G A SEC31B 5'UTR 0.36 TCGA-E5-A2PC-01 10 104157318 104157318 A G NFKB2 Silent p.K179K 0.35 TCGA-E5-A2PC-01 10 105727469 105727469 C T SLK 5'UTR 0.33 TCGA-E5-A2PC-01 10 116247730 116247730 T A ABLIM1 Missense_Mutation p.E343V 0.26 deleterious(0) possibly_damaging(0.798) TCGA-E5-A2PC-01 10 118305637 118305637 G A PNLIP Silent p.L11L 0.34 TCGA-E5-A2PC-01 10 122624668 122624668 G C WDR11 Missense_Mutation p.V275L 0.38 tolerated(0.32) benign(0.002) TCGA-E5-A2PC-01 10 124399605 124399605 C T DMBT1 Missense_Mutation p.S2202L 0.51 deleterious(0.02) possibly_damaging(0.684) TCGA-E5-A2PC-01 10 16824066 16824066 T C RSU1 Missense_Mutation p.T43A 0.18 deleterious(0.02) benign(0.005) TCGA-E5-A2PC-01 10 37486374 37486374 C A ANKRD30A Silent p.A838A 0.43 TCGA-E5-A2PC-01 10 50872873 50872873 T C CHAT Silent p.N676N 0.26 TCGA-E5-A2PC-01 10 75545836 75545836 G A ZSWIM8 Missense_Mutation p.R67K 0.23 tolerated(1) benign(0.002) TCGA-E5-A2PC-01 10 95287764 95287764 G A CEP55 Missense_Mutation p.E417K 0.29 tolerated(0.21) benign(0.111) TCGA-E5-A2PC-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.38 TCGA-E5-A2PC-01 10 97920088 97920088 C T ZNF518A RNA 0.25 TCGA-E5-A2PC-01 10 98794286 98794286 T G SLIT1 Missense_Mutation p.N794H 0.43 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 11 128332236 128332236 C A ETS1 3'UTR 0.47 TCGA-E5-A2PC-01 11 130275730 130275730 A T ADAMTS8 Missense_Mutation p.F798Y 0.76 tolerated(1) possibly_damaging(0.699) TCGA-E5-A2PC-01 11 17428979 17428979 C - ABCC8 Frame_Shift_Del p.A948Pfs*94 0.17 TCGA-E5-A2PC-01 11 36523047 36523047 C T TRAF6 Missense_Mutation p.E7K 0.37 tolerated_low_confidence(0.05) probably_damaging(0.987) TCGA-E5-A2PC-01 11 3877428 3877428 C T STIM1 5'UTR 0.42 TCGA-E5-A2PC-01 11 404268 404268 C T PKP3 Missense_Mutation p.S768F 0.33 deleterious(0) possibly_damaging(0.736) TCGA-E5-A2PC-01 11 55110736 55110736 T A OR4A16 Missense_Mutation p.D20E 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-E5-A2PC-01 11 55595538 55595538 A T OR5L2 Missense_Mutation p.I282F 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A2PC-01 11 56058390 56058390 C T OR8H1 Missense_Mutation p.R50H 0.41 tolerated(0.23) benign(0.002) TCGA-E5-A2PC-01 11 57319864 57319864 G A UBE2L6 Silent p.F143F 0.41 TCGA-E5-A2PC-01 11 65417623 65417623 G C SIPA1 Missense_Mutation p.E955Q 0.35 tolerated(0.19) possibly_damaging(0.588) TCGA-E5-A2PC-01 11 68517984 68517984 A T MTL5 Missense_Mutation p.F49I 0.25 deleterious_low_confidence(0.04) benign(0.231) TCGA-E5-A2PC-01 11 84028143 84028143 C G DLG2 Intron 0.21 TCGA-E5-A2PC-01 11 89956187 89956187 C T CHORDC1 5'UTR 0.37 TCGA-E5-A2PC-01 12 101745949 101745949 G C UTP20 Missense_Mutation p.Q1667H 0.22 tolerated(0.15) possibly_damaging(0.572) TCGA-E5-A2PC-01 12 101760349 101760349 C T UTP20 Missense_Mutation p.P2047S 0.54 deleterious(0.01) benign(0.356) TCGA-E5-A2PC-01 12 124069182 124069182 C A TMED2 5'UTR 0.43 TCGA-E5-A2PC-01 12 124341734 124341734 C T DNAH10 Silent p.D2072D 0.22 TCGA-E5-A2PC-01 12 12814505 12814505 T C GPR19 Missense_Mutation p.H293R 0.25 deleterious(0.01) benign(0.295) TCGA-E5-A2PC-01 12 2786965 2786965 G A CACNA1C Missense_Mutation p.A1723T 0.63 tolerated(0.44) benign(0.032) TCGA-E5-A2PC-01 12 45567437 45567437 A G PLEKHA8P1 RNA 0.50 TCGA-E5-A2PC-01 12 49726831 49726831 G T C1QL4 3'UTR 0.38 TCGA-E5-A2PC-01 12 53670542 53670542 G A ESPL1 Silent p.L613L 0.21 TCGA-E5-A2PC-01 12 56236139 56236139 C A MMP19 Silent p.L57L 0.25 TCGA-E5-A2PC-01 12 57550039 57550039 A G LRP1 Missense_Mutation p.I464V 0.16 benign(0.003) TCGA-E5-A2PC-01 12 57865459 57865459 A G GLI1 Missense_Mutation p.N979S 0.23 tolerated_low_confidence(0.29) benign(0.005) TCGA-E5-A2PC-01 12 7043167 7043167 G A ATN1 Translation_Start_Site p.M1? 0.28 probably_damaging(0.939) TCGA-E5-A2PC-01 12 77458337 77458337 C G E2F7 Missense_Mutation p.E27Q 0.24 deleterious(0.04) benign(0.035) TCGA-E5-A2PC-01 12 80665530 80665530 C A OTOGL Missense_Mutation p.A865D 0.38 deleterious(0) probably_damaging(0.993) TCGA-E5-A2PC-01 12 80665531 80665531 C A OTOGL Silent p.A865A 0.50 TCGA-E5-A2PC-01 12 80665533 80665533 T A OTOGL Missense_Mutation p.M866K 0.53 deleterious(0) probably_damaging(0.978) TCGA-E5-A2PC-01 12 8988145 8988145 C T A2ML1 Missense_Mutation p.P176S 0.25 deleterious(0.03) possibly_damaging(0.74) TCGA-E5-A2PC-01 12 91449916 91449916 C G KERA Missense_Mutation p.C48S 0.33 deleterious(0) probably_damaging(0.98) TCGA-E5-A2PC-01 12 9232332 9232332 G C A2M Silent p.V978V 0.46 TCGA-E5-A2PC-01 12 99038453 99038453 C A IKBIP Missense_Mutation p.K9N 0.24 deleterious(0) possibly_damaging(0.732) TCGA-E5-A2PC-01 13 51855235 51855235 G T FAM124A Missense_Mutation p.R531L 0.37 tolerated_low_confidence(0.55) benign(0.001) TCGA-E5-A2PC-01 13 92002999 92002999 G T MIR17HG RNA 0.36 TCGA-E5-A2PC-01 13 95840790 95840790 C T ABCC4 Missense_Mutation p.E424K 0.33 tolerated(0.2) benign(0.097) TCGA-E5-A2PC-01 14 24029009 24029009 C T AP1G2 Silent p.S769S 0.19 TCGA-E5-A2PC-01 14 24884981 24884981 C T NYNRIN Silent p.S1342S 0.44 TCGA-E5-A2PC-01 14 24906518 24906518 C G KHNYN 3'UTR 0.42 TCGA-E5-A2PC-01 14 38061313 38061313 C T FOXA1 Missense_Mutation p.D226N 0.51 deleterious(0) probably_damaging(0.999) TCGA-E5-A2PC-01 14 51224125 51224125 A T NIN Missense_Mutation p.M1208K 0.38 tolerated(0.97) benign(0.001) TCGA-E5-A2PC-01 14 56107858 56107858 G C KTN1 Missense_Mutation p.D679H 0.33 deleterious(0) possibly_damaging(0.894) TCGA-E5-A2PC-01 14 58605192 58605192 T G C14orf37 Missense_Mutation p.E295D 0.37 tolerated(0.17) benign(0.388) TCGA-E5-A2PC-01 14 58605935 58605935 C A C14orf37 Missense_Mutation p.D48Y 0.37 deleterious(0) probably_damaging(0.963) TCGA-E5-A2PC-01 14 74040235 74040235 G C ACOT2 Missense_Mutation p.E263Q 0.37 tolerated(0.11) benign(0.002) TCGA-E5-A2PC-01 14 77273074 77273074 G T ANGEL1 Silent p.G355G 0.44 TCGA-E5-A2PC-01 15 34648800 34648800 G A NUTM1 Nonsense_Mutation p.W836* 0.27 TCGA-E5-A2PC-01 15 42651979 42651979 G T CAPN3 5'UTR 0.28 TCGA-E5-A2PC-01 15 45814250 45814250 C T SLC30A4 Silent p.Q101Q 0.29 TCGA-E5-A2PC-01 15 51289630 51289630 T A AP4E1 Missense_Mutation p.F818L 0.22 tolerated(0.5) benign(0.003) TCGA-E5-A2PC-01 15 67479786 67479786 C A SMAD3 Missense_Mutation p.Q365K 0.62 tolerated(0.1) benign(0.07) TCGA-E5-A2PC-01 15 67547193 67547193 G A IQCH 5'UTR 0.20 TCGA-E5-A2PC-01 15 85401422 85401422 C T ALPK3 Silent p.L1353L 0.20 TCGA-E5-A2PC-01 16 23083506 23083506 G A USP31 Missense_Mutation p.S783F 0.43 deleterious(0) probably_damaging(0.943) TCGA-E5-A2PC-01 16 24802570 24802570 C T TNRC6A Silent p.A869A 0.09 TCGA-E5-A2PC-01 16 28509168 28509168 G C APOBR Missense_Mutation p.E936Q 0.41 tolerated(0.22) possibly_damaging(0.702) TCGA-E5-A2PC-01 16 30199868 30199868 G A CORO1A Missense_Mutation p.A418T 0.55 tolerated(0.36) benign(0) TCGA-E5-A2PC-01 16 57504205 57504205 T C POLR2C Missense_Mutation p.Y208H 0.40 tolerated(0.13) benign(0.072) TCGA-E5-A2PC-01 16 67974100 67974109 GCAGGCCCAC - LCAT Frame_Shift_Del p.V341Pfs*66 0.31 TCGA-E5-A2PC-01 16 69199282 69199282 T C CIRH1A Silent p.D562D 0.41 TCGA-E5-A2PC-01 16 74695239 74695239 G A RFWD3 Nonsense_Mutation p.Q37* 0.42 TCGA-E5-A2PC-01 16 78064707 78064707 G C CLEC3A Missense_Mutation p.R197T 0.14 tolerated(0.08) benign(0.209) TCGA-E5-A2PC-01 16 88706293 88706293 A C IL17C Missense_Mutation p.D136A 0.53 deleterious(0.01) benign(0.338) TCGA-E5-A2PC-01 16 89294114 89294114 G C ZNF778 Missense_Mutation p.G445A 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-E5-A2PC-01 16 89346334 89346334 C G ANKRD11 Missense_Mutation p.E2206Q 0.30 benign(0.012) TCGA-E5-A2PC-01 16 89357082 89357082 G A ANKRD11 Silent p.I184I 0.41 TCGA-E5-A2PC-01 16 89357086 89357086 C T ANKRD11 Missense_Mutation p.R183H 0.41 probably_damaging(0.991) TCGA-E5-A2PC-01 16 89857865 89857865 G C FANCA Silent p.R435R 0.49 TCGA-E5-A2PC-01 16 89865423 89865423 C T FANCA Intron 0.51 TCGA-E5-A2PC-01 16 90076440 90076440 T G DBNDD1 Missense_Mutation p.K6Q 0.39 tolerated_low_confidence(0.21) benign(0.003) TCGA-E5-A2PC-01 17 10542927 10542927 C T MYH3 Missense_Mutation p.E959K 0.70 deleterious(0) benign(0.157) TCGA-E5-A2PC-01 17 1381474 1381474 G A MYO1C Silent p.F436F 0.70 TCGA-E5-A2PC-01 17 27065197 27065197 G A NEK8 Missense_Mutation p.E386K 0.38 deleterious(0.05) benign(0.232) TCGA-E5-A2PC-01 17 27065214 27065214 G A NEK8 Silent p.V391V 0.37 TCGA-E5-A2PC-01 17 30800897 30800897 C G PSMD11 Missense_Mutation p.S241C 0.05 deleterious(0) possibly_damaging(0.766) TCGA-E5-A2PC-01 17 36872640 36872640 C G MLLT6 Missense_Mutation p.P353A 0.40 tolerated(0.1) unknown(0) TCGA-E5-A2PC-01 17 39116697 39116697 C T KRT39 Silent p.L351L 0.34 TCGA-E5-A2PC-01 17 41925958 41925958 A T CD300LG Missense_Mutation p.S26C 0.39 deleterious(0) probably_damaging(0.976) TCGA-E5-A2PC-01 17 42475276 42475276 G A GPATCH8 Missense_Mutation p.A1390V 0.12 deleterious(0.01) unknown(0) TCGA-E5-A2PC-01 17 45750925 45750925 C A KPNB1 Missense_Mutation p.Q589K 0.52 deleterious(0.04) probably_damaging(0.913) TCGA-E5-A2PC-01 17 47284048 47284048 G T GNGT2 3'UTR 0.33 TCGA-E5-A2PC-01 17 57754351 57754351 T A CLTC Silent p.I866I 0.36 TCGA-E5-A2PC-01 17 61949641 61949641 G A CSH2 Nonsense_Mutation p.Q167* 0.41 TCGA-E5-A2PC-01 17 61950572 61950572 C T CSH2 Silent p.A46A 0.15 TCGA-E5-A2PC-01 17 62018842 62018842 G T SCN4A Missense_Mutation p.N1600K 0.37 deleterious(0) probably_damaging(0.999) TCGA-E5-A2PC-01 17 65353674 65353674 G A PSMD12 Silent p.V43V 0.20 TCGA-E5-A2PC-01 17 73872340 73872340 C T TRIM47 Intron 0.44 TCGA-E5-A2PC-01 17 7578478 7578478 G T TP53 Missense_Mutation p.P151H 0.75 deleterious(0) possibly_damaging(0.773) TCGA-E5-A2PC-01 17 78320135 78320135 C G RNF213 Missense_Mutation p.S2667C 0.24 benign(0.004) TCGA-E5-A2PC-01 17 81006550 81006550 T C B3GNTL1 Missense_Mutation p.S58G 0.50 deleterious(0) probably_damaging(0.999) TCGA-E5-A2PC-01 18 21110004 21110004 G A C18orf8 Missense_Mutation p.E503K 0.55 tolerated(0.16) probably_damaging(0.936) TCGA-E5-A2PC-01 18 29797898 29797898 C T MEP1B Silent p.S687S 0.14 TCGA-E5-A2PC-01 18 29797900 29797900 C A MEP1B Nonsense_Mutation p.S688* 0.12 TCGA-E5-A2PC-01 18 77802217 77802217 G A RBFA Missense_Mutation p.E192K 0.31 deleterious(0.03) benign(0.113) TCGA-E5-A2PC-01 19 10883300 10883300 A G DNM2 Silent p.P127P 0.62 TCGA-E5-A2PC-01 19 14038827 14038827 C T CC2D1A Missense_Mutation p.P813L 0.70 deleterious(0) possibly_damaging(0.449) TCGA-E5-A2PC-01 19 18378362 18378362 G T KIAA1683 Intron 0.76 TCGA-E5-A2PC-01 19 3771575 3771575 T G RAX2 Missense_Mutation p.S56R 1.00 deleterious(0) probably_damaging(0.985) TCGA-E5-A2PC-01 19 41770556 41770556 G A HNRNPUL1 Missense_Mutation p.A50T 0.21 tolerated(0.11) unknown(0) TCGA-E5-A2PC-01 19 44251840 44251840 A G SMG9 Silent p.P145P 0.24 TCGA-E5-A2PC-01 19 4512576 4512576 T C PLIN4 Missense_Mutation p.K452E 0.78 deleterious(0.04) possibly_damaging(0.824) TCGA-E5-A2PC-01 19 45855787 45855787 C T ERCC2 Missense_Mutation p.G675S 0.45 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 19 46141892 46141892 T A EML2 Missense_Mutation p.E218V 0.19 deleterious(0) probably_damaging(0.975) TCGA-E5-A2PC-01 19 46141893 46141893 C A EML2 Splice_Site p.X218_splice 0.19 TCGA-E5-A2PC-01 19 53384401 53384401 C T ZNF320 Silent p.E326E 0.35 TCGA-E5-A2PC-01 19 55014120 55014120 T A LAIR2 5'UTR 0.13 TCGA-E5-A2PC-01 19 55014121 55014121 C A LAIR2 5'UTR 0.13 TCGA-E5-A2PC-01 19 55046832 55046832 C T KIR3DX1 Missense_Mutation p.A126V 0.39 tolerated(0.13) probably_damaging(0.953) TCGA-E5-A2PC-01 19 56243884 56243884 C G NLRP9 Missense_Mutation p.G438A 0.44 deleterious(0) probably_damaging(0.97) TCGA-E5-A2PC-01 19 5696709 5696709 G A LONP1 Missense_Mutation p.T582M 0.73 deleterious(0) possibly_damaging(0.906) TCGA-E5-A2PC-01 1 111147122 111147122 C A KCNA2 Missense_Mutation p.G95W 0.20 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 1 115318966 115318966 C T SIKE1 Splice_Site p.X178_splice 0.21 TCGA-E5-A2PC-01 1 118065638 118065638 A G MAN1A2 3'UTR 0.14 TCGA-E5-A2PC-01 1 118640299 118640299 C T SPAG17 Silent p.E335E 0.24 TCGA-E5-A2PC-01 1 13474973 13474973 C T PRAMEF18 Missense_Mutation p.G386S 0.46 deleterious(0.02) probably_damaging(0.996) TCGA-E5-A2PC-01 1 149783901 149783901 G C HIST2H2BF 5'UTR 0.11 TCGA-E5-A2PC-01 1 150923028 150923028 C T SETDB1 Missense_Mutation p.P559S 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-E5-A2PC-01 1 154459062 154459062 G T SHE Silent p.A374A 0.17 TCGA-E5-A2PC-01 1 155013956 155013956 G T DCST1 Silent p.T205T 0.12 TCGA-E5-A2PC-01 1 155023327 155023327 A G DCST1 Missense_Mutation p.T702A 0.64 tolerated(1) benign(0) TCGA-E5-A2PC-01 1 155226174 155226174 G A SCAMP3 Nonsense_Mutation p.Q312* 0.16 TCGA-E5-A2PC-01 1 155736062 155736062 A G GON4L Missense_Mutation p.S1068P 0.78 tolerated_low_confidence(0.26) benign(0.161) TCGA-E5-A2PC-01 1 160520800 160520800 G T CD84 Nonsense_Mutation p.Y279* 0.32 TCGA-E5-A2PC-01 1 160968658 160968658 G A F11R 3'UTR 0.61 TCGA-E5-A2PC-01 1 1634992 1634992 G A CDK11A Silent p.F661F 0.21 TCGA-E5-A2PC-01 1 165173230 165173230 T A LMX1A Missense_Mutation p.S346C 0.08 tolerated(0.1) possibly_damaging(0.76) TCGA-E5-A2PC-01 1 167487771 167487771 G A CD247 5'UTR 0.83 TCGA-E5-A2PC-01 1 169857941 169857941 C G SCYL3 Missense_Mutation p.R14T 0.12 deleterious(0.05) benign(0.002) TCGA-E5-A2PC-01 1 1756890 1756890 C A GNB1 Translation_Start_Site p.M1? 0.49 deleterious(0.01) benign(0.094) TCGA-E5-A2PC-01 1 180217472 180217472 G A LHX4 Silent p.L43L 0.12 TCGA-E5-A2PC-01 1 180243830 180243830 C T LHX4 3'UTR 0.54 TCGA-E5-A2PC-01 1 182641972 182641972 T C RGS8 5'UTR 0.19 TCGA-E5-A2PC-01 1 18807481 18807497 CCCCAGAGGAGCAGAGG - KLHDC7A Frame_Shift_Del p.R4Gfs*81 0.36 TCGA-E5-A2PC-01 1 19487579 19487579 C T UBR4 Silent p.Q1746Q 0.25 TCGA-E5-A2PC-01 1 197112811 197112811 G A ASPM Missense_Mutation p.P191S 0.83 deleterious(0) probably_damaging(0.952) TCGA-E5-A2PC-01 1 201983137 201983153 TGAGCCGGGCCATGAGG - ELF3 Splice_Site p.X331_splice 0.88 TCGA-E5-A2PC-01 1 204412707 204412707 G A PIK3C2B Silent p.L962L 0.86 TCGA-E5-A2PC-01 1 216348570 216348570 T G USH2A Intron 0.89 TCGA-E5-A2PC-01 1 235973787 235973787 T A LYST Missense_Mutation p.N111Y 0.77 deleterious_low_confidence(0.01) benign(0.241) TCGA-E5-A2PC-01 1 248028105 248028105 G A TRIM58 Silent p.E205E 0.83 TCGA-E5-A2PC-01 1 25893369 25893369 C T LDLRAP1 Silent p.V271V 0.31 TCGA-E5-A2PC-01 1 34329747 34329747 C T HMGB4 5'UTR 0.17 TCGA-E5-A2PC-01 1 38511353 38511353 C T POU3F1 Missense_Mutation p.E355K 0.38 deleterious(0) benign(0.155) TCGA-E5-A2PC-01 1 40150121 40150121 T A HPCAL4 Missense_Mutation p.Y52F 0.52 tolerated(0.06) benign(0.05) TCGA-E5-A2PC-01 1 46655654 46655654 C T POMGNT1 Missense_Mutation p.E553K 0.14 benign(0.015) TCGA-E5-A2PC-01 1 46744864 46744864 G C LRRC41 Missense_Mutation p.L737V 0.61 deleterious(0) possibly_damaging(0.567) TCGA-E5-A2PC-01 1 50941244 50941244 C T FAF1 Silent p.E587E 0.13 TCGA-E5-A2PC-01 1 8403885 8403885 G T SLC45A1 Missense_Mutation p.A687S 0.24 tolerated(0.4) probably_damaging(0.997) TCGA-E5-A2PC-01 1 91967346 91967346 G A CDC7 Missense_Mutation p.E25K 0.21 deleterious_low_confidence(0.01) benign(0.089) TCGA-E5-A2PC-01 1 92757089 92757089 G A GLMN Silent p.I57I 0.25 TCGA-E5-A2PC-01 1 93646208 93646208 C T CCDC18 5'Flank 0.69 TCGA-E5-A2PC-01 20 20349839 20349839 C G INSM1 Missense_Mutation p.L310V 0.47 deleterious(0) possibly_damaging(0.694) TCGA-E5-A2PC-01 20 2443347 2443347 G C SNRPB Missense_Mutation p.P207R 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-E5-A2PC-01 20 34022485 34022485 C T GDF5 Missense_Mutation p.R243Q 0.21 deleterious(0.02) possibly_damaging(0.857) TCGA-E5-A2PC-01 20 389408 389408 G A RBCK1 Missense_Mutation p.E3K 0.55 deleterious_low_confidence(0.01) benign(0.155) TCGA-E5-A2PC-01 20 42320809 42320809 T C MYBL2 Silent p.A171A 0.42 TCGA-E5-A2PC-01 20 42320810 42320810 G C MYBL2 Missense_Mutation p.V172L 0.42 deleterious(0.01) possibly_damaging(0.879) TCGA-E5-A2PC-01 20 43355781 43355781 G A WISP2 Missense_Mutation p.E196K 0.36 tolerated(0.53) benign(0.071) TCGA-E5-A2PC-01 20 61467685 61467685 G C COL9A3 Silent p.P516P 0.38 TCGA-E5-A2PC-01 20 61597892 61597892 C T SLC17A9 Silent p.N359N 0.08 TCGA-E5-A2PC-01 21 11039075 11039075 T A BAGE2 RNA 0.04 TCGA-E5-A2PC-01 21 33974143 33974143 C G C21orf59 3'UTR 0.67 TCGA-E5-A2PC-01 21 35147174 35147174 G C ITSN1 Missense_Mutation p.E483Q 0.22 deleterious(0.02) probably_damaging(0.934) TCGA-E5-A2PC-01 21 37665692 37665692 C T DOPEY2 Silent p.I2240I 0.47 TCGA-E5-A2PC-01 21 37665713 37665713 C T DOPEY2 Silent p.F2247F 0.48 TCGA-E5-A2PC-01 21 40636520 40636520 G T BRWD1 Missense_Mutation p.P584H 0.48 deleterious(0) probably_damaging(0.996) TCGA-E5-A2PC-01 21 40783687 40783687 A G LCA5L Silent p.H339H 0.32 TCGA-E5-A2PC-01 21 45666349 45666349 C T DNMT3L Silent p.V365V 0.27 TCGA-E5-A2PC-01 22 18189566 18189566 G A BCL2L13 Intron 0.29 TCGA-E5-A2PC-01 22 19001938 19001938 G A DGCR9 5'Flank 0.55 TCGA-E5-A2PC-01 22 21357276 21357276 C T AC002472.1 3'Flank 0.43 TCGA-E5-A2PC-01 22 22782185 22782201 AGGGAGCCCTCCCAGGT - IGLV5-37 Frame_Shift_Del p.G62Sfs*10 0.23 TCGA-E5-A2PC-01 22 40059831 40059831 C G CACNA1I Missense_Mutation p.I1194M 0.23 deleterious(0.02) possibly_damaging(0.453) TCGA-E5-A2PC-01 22 40283688 40283688 C G ENTHD1 Missense_Mutation p.R22T 0.24 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 22 41652232 41652232 C T RANGAP1 Missense_Mutation p.M317I 0.45 tolerated(0.23) benign(0) TCGA-E5-A2PC-01 22 41924086 41924086 C T POLR3H 3'UTR 0.29 TCGA-E5-A2PC-01 2 108998923 108998923 A T SULT1C4 Silent p.L126L 0.42 TCGA-E5-A2PC-01 2 109382445 109382445 C T RANBP2 Missense_Mutation p.A1817V 0.13 tolerated(0.11) benign(0.018) TCGA-E5-A2PC-01 2 112588951 112588951 T G ANAPC1 Missense_Mutation p.Q846P 0.34 tolerated(0.07) possibly_damaging(0.46) TCGA-E5-A2PC-01 2 113300040 113300040 G A POLR1B 5'UTR 0.61 TCGA-E5-A2PC-01 2 149225912 149225912 G C MBD5 Missense_Mutation p.A134P 0.44 deleterious(0.01) possibly_damaging(0.82) TCGA-E5-A2PC-01 2 165551575 165551575 G C COBLL1 Missense_Mutation p.T814S 0.44 tolerated(0.91) benign(0.437) TCGA-E5-A2PC-01 2 170505817 170505817 C T CCDC173 Missense_Mutation p.E398K 0.28 tolerated(0.15) benign(0.442) TCGA-E5-A2PC-01 2 172669944 172669944 C A SLC25A12 Missense_Mutation p.G359V 0.41 deleterious(0.01) benign(0.297) TCGA-E5-A2PC-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.42 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 2 18764238 18764238 A T NT5C1B Missense_Mutation p.L366H 0.16 deleterious(0) probably_damaging(0.997) TCGA-E5-A2PC-01 2 201761879 201761879 A G NIF3L1 Missense_Mutation p.I269M 0.42 tolerated(0.29) possibly_damaging(0.846) TCGA-E5-A2PC-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.44 deleterious(0.04) benign(0.233) TCGA-E5-A2PC-01 2 206588590 206588590 T G NRP2 Missense_Mutation p.F249C 0.45 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 2 207620047 207620047 G A MDH1B Missense_Mutation p.T199M 0.27 deleterious(0.01) probably_damaging(0.915) TCGA-E5-A2PC-01 2 220427307 220427307 G A OBSL1 Missense_Mutation p.R924W 0.21 deleterious(0) possibly_damaging(0.794) TCGA-E5-A2PC-01 2 230650558 230650558 C T TRIP12 Missense_Mutation p.R1595Q 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-E5-A2PC-01 2 238305412 238305412 G A COL6A3 Missense_Mutation p.L17F 0.13 benign(0.028) TCGA-E5-A2PC-01 2 31562461 31562461 C T XDH Missense_Mutation p.R1223H 0.39 deleterious(0) probably_damaging(0.937) TCGA-E5-A2PC-01 2 32626345 32626345 T C BIRC6 Silent p.D383D 0.40 TCGA-E5-A2PC-01 2 40656252 40656252 G A SLC8A1 Missense_Mutation p.A390V 0.38 tolerated(0.36) possibly_damaging(0.573) TCGA-E5-A2PC-01 2 42578286 42578286 T A COX7A2L 3'UTR 0.59 TCGA-E5-A2PC-01 2 72371249 72371249 C T CYP26B1 Missense_Mutation p.E100K 0.36 deleterious(0.01) possibly_damaging(0.7) TCGA-E5-A2PC-01 2 74432979 74432979 C G MTHFD2 Silent p.S83S 0.41 TCGA-E5-A2PC-01 2 80136717 80136717 C T CTNNA2 Intron 0.40 TCGA-E5-A2PC-01 2 86669240 86669240 G A KDM3A Missense_Mutation p.D24N 0.41 tolerated(0.26) benign(0.177) TCGA-E5-A2PC-01 2 88885403 88885403 T C EIF2AK3 Missense_Mutation p.T536A 0.50 deleterious(0.01) possibly_damaging(0.689) TCGA-E5-A2PC-01 2 97533612 97533612 G A SEMA4C Silent p.H4H 0.38 TCGA-E5-A2PC-01 3 108407451 108407451 A G DZIP3 Silent p.K1094K 0.41 TCGA-E5-A2PC-01 3 12211351 12211351 T C SYN2 RNA 0.20 TCGA-E5-A2PC-01 3 122631022 122631022 G A SEMA5B Missense_Mutation p.P1019S 0.42 deleterious(0.04) benign(0.149) TCGA-E5-A2PC-01 3 127292353 127292353 G A TPRA1 3'UTR 0.10 TCGA-E5-A2PC-01 3 128852989 128852989 C T ISY1 Silent p.L219L 0.11 TCGA-E5-A2PC-01 3 175184817 175184817 G A NAALADL2 Missense_Mutation p.G460R 0.28 tolerated(0.05) benign(0.29) TCGA-E5-A2PC-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.33 deleterious(0.02) probably_damaging(0.959) TCGA-E5-A2PC-01 3 179085314 179085314 T G MFN1 Missense_Mutation p.F281V 0.60 deleterious(0) probably_damaging(0.999) TCGA-E5-A2PC-01 3 191888334 191888334 C A FGF12 Nonsense_Mutation p.G176* 0.18 TCGA-E5-A2PC-01 3 39180207 39180207 C T TTC21A Silent p.L1297L 0.65 TCGA-E5-A2PC-01 3 47891103 47891119 AGCCCTGTGTTCCCTAG - DHX30 Splice_Site p.X1064_splice 0.21 TCGA-E5-A2PC-01 3 48310197 48310197 G A ZNF589 Missense_Mutation p.R339Q 0.16 tolerated(0.29) benign(0.064) TCGA-E5-A2PC-01 3 48630366 48630366 C T COL7A1 Missense_Mutation p.D230N 0.33 unknown(0) TCGA-E5-A2PC-01 3 48689917 48689917 G T CELSR3 Missense_Mutation p.P1902T 0.21 tolerated(0.41) benign(0.088) TCGA-E5-A2PC-01 3 49141772 49141772 C T QARS Missense_Mutation p.E84K 0.57 tolerated(0.59) possibly_damaging(0.559) TCGA-E5-A2PC-01 3 49459597 49459597 A T AMT Silent p.T66T 0.20 TCGA-E5-A2PC-01 3 52597459 52597459 A G PBRM1 Missense_Mutation p.I1284T 0.20 tolerated(0.07) benign(0.291) TCGA-E5-A2PC-01 3 58111396 58111396 T C FLNB Silent p.S1329S 0.54 TCGA-E5-A2PC-01 3 95374084 95374084 A G MTHFD2P1 RNA 0.22 TCGA-E5-A2PC-01 4 110740212 110740212 A T GAR1 Missense_Mutation p.Q142L 0.40 deleterious(0.01) possibly_damaging(0.593) TCGA-E5-A2PC-01 4 110789062 110789062 C A LRIT3 Silent p.I285I 0.12 TCGA-E5-A2PC-01 4 17816575 17816575 G T NCAPG Missense_Mutation p.G215V 0.43 tolerated(0.11) benign(0.011) TCGA-E5-A2PC-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.35 deleterious(0.01) possibly_damaging(0.594) TCGA-E5-A2PC-01 4 22389290 22389290 C A GPR125 3'UTR 0.20 TCGA-E5-A2PC-01 4 22389291 22389291 A G GPR125 3'UTR 0.21 TCGA-E5-A2PC-01 4 37592666 37592666 C T C4orf19 3'UTR 0.53 TCGA-E5-A2PC-01 4 509942 509942 T A PIGG Missense_Mutation p.L361Q 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-E5-A2PC-01 4 55970921 55970921 T C KDR Missense_Mutation p.I626V 0.10 tolerated(0.29) benign(0.001) TCGA-E5-A2PC-01 4 6114541 6114541 C T JAKMIP1 Missense_Mutation p.E13K 0.26 deleterious(0.01) benign(0.199) TCGA-E5-A2PC-01 4 71275374 71275374 G C PROL1 Missense_Mutation p.R110T 0.19 deleterious_low_confidence(0) benign(0.402) TCGA-E5-A2PC-01 4 73186565 73186565 C T ADAMTS3 Missense_Mutation p.G323E 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-E5-A2PC-01 4 82362031 82362031 C T RASGEF1B Missense_Mutation p.G354E 0.43 deleterious(0) benign(0.039) TCGA-E5-A2PC-01 4 955317 955317 C T DGKQ Missense_Mutation p.E838K 0.43 tolerated(0.24) possibly_damaging(0.792) TCGA-E5-A2PC-01 5 11022943 11022943 C T CTNND2 Silent p.K979K 0.25 TCGA-E5-A2PC-01 5 150946090 150946090 G A FAT2 Silent p.S801S 0.80 TCGA-E5-A2PC-01 5 169477279 169477279 G T DOCK2 Missense_Mutation p.R1364L 0.34 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 5 42801486 42801486 T C CCDC152 3'UTR 0.92 TCGA-E5-A2PC-01 5 45645317 45645317 C A HCN1 Missense_Mutation p.R273S 0.75 deleterious(0) probably_damaging(0.994) TCGA-E5-A2PC-01 5 476428 476428 G A SLC9A3 Silent p.I652I 0.78 TCGA-E5-A2PC-01 5 57755666 57755666 C T PLK2 Missense_Mutation p.E41K 0.73 tolerated_low_confidence(0.67) benign(0.006) TCGA-E5-A2PC-01 5 64920912 64920912 G C TRAPPC13 Missense_Mutation p.E9Q 0.64 tolerated(0.07) possibly_damaging(0.828) TCGA-E5-A2PC-01 5 96100940 96100940 C A CAST Missense_Mutation p.L609I 0.67 tolerated(0.09) benign(0.247) TCGA-E5-A2PC-01 6 123319132 123319132 C G CLVS2 Silent p.R70R 0.38 TCGA-E5-A2PC-01 6 144613024 144613024 T C UTRN Silent p.D20D 0.62 TCGA-E5-A2PC-01 6 151687920 151687920 C T ZBTB2 Missense_Mutation p.R94Q 0.76 deleterious(0.02) probably_damaging(0.992) TCGA-E5-A2PC-01 6 160169296 160169296 C T WTAP Missense_Mutation p.A116V 0.52 deleterious(0.01) possibly_damaging(0.803) TCGA-E5-A2PC-01 6 167755014 167755014 G C TTLL2 Silent p.L542L 0.69 TCGA-E5-A2PC-01 6 169051454 169051454 C T SMOC2 Missense_Mutation p.S345L 0.80 tolerated(0.41) benign(0.207) TCGA-E5-A2PC-01 6 28057286 28057286 A G ZNF165 3'UTR 0.29 TCGA-E5-A2PC-01 6 3284172 3284172 C A SLC22A23 Silent p.A539A 0.39 TCGA-E5-A2PC-01 6 42231063 42231063 C G TRERF1 Missense_Mutation p.V627L 0.28 tolerated(0.07) benign(0.097) TCGA-E5-A2PC-01 6 42625826 42625826 T G UBR2 Silent p.A979A 0.42 TCGA-E5-A2PC-01 6 43008026 43008026 C T CUL7 Missense_Mutation p.E1472K 0.41 tolerated(0.1) benign(0.036) TCGA-E5-A2PC-01 6 46656613 46656613 G A TDRD6 Missense_Mutation p.V250M 0.48 deleterious(0) probably_damaging(0.996) TCGA-E5-A2PC-01 6 46661470 46661470 C G TDRD6 Missense_Mutation p.L1869V 0.15 deleterious(0.04) benign(0.215) TCGA-E5-A2PC-01 6 7230402 7230402 G T RREB1 Silent p.L690L 0.28 TCGA-E5-A2PC-01 7 100685857 100685857 C G MUC17 Silent p.V3720V 0.42 TCGA-E5-A2PC-01 7 128630225 128630225 G A TNPO3 Intron 0.41 TCGA-E5-A2PC-01 7 139724424 139724424 G T PARP12 Missense_Mutation p.S681Y 0.21 deleterious_low_confidence(0.04) benign(0.049) TCGA-E5-A2PC-01 7 142197840 142197840 G A TRBV11-2 RNA 0.33 TCGA-E5-A2PC-01 7 142575431 142575431 C T TRPV6 Missense_Mutation p.E108K 0.43 deleterious(0.05) probably_damaging(1) TCGA-E5-A2PC-01 7 143701527 143701527 T A OR6B1 Silent p.L146L 0.29 TCGA-E5-A2PC-01 7 23390927 23390927 G C IGF2BP3 Missense_Mutation p.S227C 0.23 deleterious(0) possibly_damaging(0.733) TCGA-E5-A2PC-01 7 24911680 24911680 C G OSBPL3 Missense_Mutation p.W35C 0.25 deleterious(0) probably_damaging(0.926) TCGA-E5-A2PC-01 7 55224469 55224469 C G EGFR Missense_Mutation p.T384S 0.17 tolerated(0.1) possibly_damaging(0.843) TCGA-E5-A2PC-01 7 55468950 55468950 G C LANCL2 Missense_Mutation p.W254C 0.46 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 7 6204352 6204352 C T CYTH3 3'UTR 0.20 TCGA-E5-A2PC-01 7 624145 624145 C G PRKAR1B Missense_Mutation p.E257Q 0.36 tolerated(0.08) benign(0.025) TCGA-E5-A2PC-01 7 79846687 79846687 G A GNAI1 Missense_Mutation p.D315N 0.33 tolerated(0.14) benign(0.007) TCGA-E5-A2PC-01 8 125015472 125015475 GAAG AAAAA FER1L6 Frame_Shift_Ins p.E529Kfs*18 0.17 TCGA-E5-A2PC-01 8 143857064 143857064 A C LYNX1 Missense_Mutation p.F34C 0.27 deleterious(0) probably_damaging(0.938) TCGA-E5-A2PC-01 8 144696593 144696593 G T TSTA3 Missense_Mutation p.F165L 0.08 deleterious(0) possibly_damaging(0.899) TCGA-E5-A2PC-01 8 1626566 1626566 G T DLGAP2 Silent p.G745G 0.25 TCGA-E5-A2PC-01 8 17573306 17573306 G C MTUS1 Missense_Mutation p.H852D 0.19 tolerated(0.09) possibly_damaging(0.541) TCGA-E5-A2PC-01 8 17739539 17739539 G A FGL1 Silent p.V71V 0.44 TCGA-E5-A2PC-01 8 28378298 28378298 G A FZD3 Silent p.S111S 0.24 TCGA-E5-A2PC-01 8 41792359 41792359 G C KAT6A Missense_Mutation p.L1127V 0.16 benign(0.025) TCGA-E5-A2PC-01 8 42174385 42174385 C G IKBKB Missense_Mutation p.P363R 0.16 deleterious(0) possibly_damaging(0.512) TCGA-E5-A2PC-01 8 48614292 48614292 C T SPIDR Missense_Mutation p.H595Y 0.40 tolerated(0.67) benign(0.321) TCGA-E5-A2PC-01 8 48875509 48875509 A G MCM4 Missense_Mutation p.N201S 0.49 tolerated(0.78) benign(0.002) TCGA-E5-A2PC-01 9 113496648 113496648 G A MUSK Missense_Mutation p.G249E 0.84 tolerated(0.07) probably_damaging(1) TCGA-E5-A2PC-01 9 116053237 116053237 G T PRPF4 Missense_Mutation p.R439L 0.73 tolerated(0.19) possibly_damaging(0.834) TCGA-E5-A2PC-01 9 139877968 139877968 C T LCNL1 5'UTR 0.67 TCGA-E5-A2PC-01 X 112021646 112021646 C G AMOT 3'UTR 0.38 TCGA-E5-A2PC-01 X 123182853 123182853 A C STAG2 Splice_Site p.X274_splice 0.47 TCGA-E5-A2PC-01 X 12904760 12904760 G C TLR7 Missense_Mutation p.R378T 0.13 deleterious(0) benign(0.174) TCGA-E5-A2PC-01 X 12905270 12905270 A T TLR7 Missense_Mutation p.D548V 0.35 deleterious(0) probably_damaging(0.999) TCGA-E5-A2PC-01 X 141291023 141291023 C T MAGEC2 Missense_Mutation p.E251K 0.32 tolerated(0.17) possibly_damaging(0.511) TCGA-E5-A2PC-01 X 141291024 141291024 C T MAGEC2 Nonsense_Mutation p.W250* 0.32 TCGA-E5-A2PC-01 X 142803727 142803727 C A SPANXN2 Missense_Mutation p.K12N 0.22 tolerated_low_confidence(0.07) benign(0.401) TCGA-E5-A2PC-01 X 149809841 149809841 G T MTM1 Missense_Mutation p.D210Y 0.15 deleterious(0) probably_damaging(0.961) TCGA-E5-A2PC-01 X 152937346 152937346 G A PNCK Missense_Mutation p.R218W 0.22 deleterious(0) probably_damaging(0.998) TCGA-E5-A2PC-01 X 15509315 15509315 C T PIR Silent p.A22A 0.44 TCGA-E5-A2PC-01 X 15821884 15821884 G A ZRSR2 Missense_Mutation p.E93K 0.24 deleterious(0.03) unknown(0) TCGA-E5-A2PC-01 X 18643279 18643279 C A CDKL5 Missense_Mutation p.T803K 0.43 deleterious_low_confidence(0.01) benign(0.159) TCGA-E5-A2PC-01 X 20205975 20205975 C T RPS6KA3 Missense_Mutation p.A249T 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-E5-A2PC-01 X 3229321 3229321 G A MXRA5 Missense_Mutation p.T2308I 0.41 deleterious(0) probably_damaging(1) TCGA-E5-A2PC-01 X 3239768 3239768 T A MXRA5 Missense_Mutation p.T1320S 0.16 tolerated(0.19) benign(0.015) TCGA-E5-A2PC-01 X 38664192 38664192 C T MID1IP1 5'UTR 0.40 TCGA-E5-A2PC-01 X 44929165 44929165 G - KDM6A Frame_Shift_Del p.A756Qfs*18 0.31 TCGA-E5-A2PC-01 X 44969392 44969392 C A KDM6A Nonsense_Mutation p.C1358* 0.29 TCGA-E5-A2PC-01 X 49107796 49107796 C G FOXP3 Nonstop_Mutation p.*432Sext*? 0.30 TCGA-E5-A2PC-01 X 57619922 57619922 G A ZXDB Missense_Mutation p.D481N 0.42 deleterious(0.01) possibly_damaging(0.772) TCGA-E5-A2PC-01 X 64734785 64734785 T A LAS1L Missense_Mutation p.M666L 0.36 tolerated(0.36) benign(0.004) TCGA-E5-A2PC-01 X 70784453 70784453 C A OGT Silent p.I813I 0.41 TCGA-E5-A2PC-01 X 74598972 74598972 G C ZDHHC15 3'UTR 0.24 TCGA-E5-A4TZ-01 10 101502964 101502964 G A CUTC Missense_Mutation p.R83Q 0.14 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 10 116620560 116620560 T C FAM160B1 Missense_Mutation p.F667S 0.24 deleterious(0) possibly_damaging(0.864) TCGA-E5-A4TZ-01 10 126691538 126691538 C T CTBP2 Missense_Mutation p.G657S 0.39 deleterious(0.03) benign(0.221) TCGA-E5-A4TZ-01 10 127496021 127496021 A G UROS Missense_Mutation p.C119R 0.82 deleterious(0.02) possibly_damaging(0.677) TCGA-E5-A4TZ-01 10 17363117 17363117 G A ST8SIA6 Silent p.Y319Y 0.66 TCGA-E5-A4TZ-01 10 21158753 21158753 G A NEBL Silent p.D166D 0.07 TCGA-E5-A4TZ-01 10 24896462 24896462 C T ARHGAP21 Missense_Mutation p.E884K 0.09 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 10 27324449 27324449 C T ANKRD26 Missense_Mutation p.R977Q 0.16 tolerated(1) benign(0.001) TCGA-E5-A4TZ-01 10 46999675 46999675 G A GPRIN2 Silent p.V265V 0.12 TCGA-E5-A4TZ-01 10 48388687 48388687 C T RBP3 Missense_Mutation p.E731K 0.05 tolerated(0.32) benign(0.292) TCGA-E5-A4TZ-01 10 55626579 55626579 G T PCDH15 Silent p.A1180A 0.53 TCGA-E5-A4TZ-01 10 69571192 69571192 C T DNAJC12 Intron 0.16 TCGA-E5-A4TZ-01 10 75863615 75863615 G T VCL Missense_Mutation p.G687V 0.10 tolerated(0.06) probably_damaging(1) TCGA-E5-A4TZ-01 10 76789938 76789938 G A KAT6B Missense_Mutation p.E1786K 0.06 possibly_damaging(0.738) TCGA-E5-A4TZ-01 10 76790569 76790569 G A KAT6B Missense_Mutation p.S1996N 0.49 benign(0.064) TCGA-E5-A4TZ-01 10 82280336 82280336 C T TSPAN14 3'UTR 0.34 TCGA-E5-A4TZ-01 11 104034555 104034555 C T PDGFD Missense_Mutation p.R34H 0.19 tolerated(0.12) possibly_damaging(0.789) TCGA-E5-A4TZ-01 11 107832760 107832760 G C RAB39A Missense_Mutation p.D106H 0.07 tolerated(0.06) possibly_damaging(0.86) TCGA-E5-A4TZ-01 11 111930633 111930635 TGT - DLAT In_Frame_Del p.V509del 0.32 TCGA-E5-A4TZ-01 11 113780031 113780031 G T HTR3B Missense_Mutation p.D23Y 0.16 tolerated(0.06) possibly_damaging(0.786) TCGA-E5-A4TZ-01 11 118047235 118047235 A - SCN2B 5'UTR 0.38 TCGA-E5-A4TZ-01 11 118375019 118375019 C A KMT2A Silent p.L2804L 0.17 TCGA-E5-A4TZ-01 11 119535514 119535516 CTC TT PVRL1 Frame_Shift_Del p.E499Kfs*99 0.17 TCGA-E5-A4TZ-01 11 125489914 125489914 C G STT3A Missense_Mutation p.P658A 0.15 tolerated(0.26) benign(0.002) TCGA-E5-A4TZ-01 11 126343309 126343309 C T KIRREL3 Silent p.A162A 0.60 TCGA-E5-A4TZ-01 11 17317693 17317693 G A NUCB2 Missense_Mutation p.D63N 0.15 tolerated(0.73) benign(0.244) TCGA-E5-A4TZ-01 11 17565878 17565878 C G USH1C 5'Flank 0.08 TCGA-E5-A4TZ-01 11 18301459 18301459 G A HPS5 Silent p.C1120C 0.31 TCGA-E5-A4TZ-01 11 19252338 19252338 C G E2F8 Silent p.V370V 0.05 TCGA-E5-A4TZ-01 11 26463550 26463550 C T ANO3 Silent p.Y44Y 0.35 TCGA-E5-A4TZ-01 11 40136625 40136625 G A LRRC4C Silent p.L406L 0.34 TCGA-E5-A4TZ-01 11 4510912 4510912 C T OR52K1 Missense_Mutation p.S261L 0.13 tolerated(0.25) benign(0.167) TCGA-E5-A4TZ-01 11 46564002 46564002 C A AMBRA1 Missense_Mutation p.G432V 0.34 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-E5-A4TZ-01 11 47833972 47833972 C T NUP160 Silent p.V654V 0.06 TCGA-E5-A4TZ-01 11 56058206 56058206 A C OR8H1 Missense_Mutation p.C111W 0.17 deleterious(0) possibly_damaging(0.687) TCGA-E5-A4TZ-01 11 56058234 56058234 A G OR8H1 Missense_Mutation p.F102S 0.15 deleterious(0.02) possibly_damaging(0.675) TCGA-E5-A4TZ-01 11 59132684 59132684 C G OR5AN1 Silent p.L251L 0.13 TCGA-E5-A4TZ-01 11 60893302 60893302 G A CD5 Silent p.Q493Q 0.21 TCGA-E5-A4TZ-01 11 61960901 61960901 G C SCGB1D1 3'UTR 0.13 TCGA-E5-A4TZ-01 11 6532654 6532654 C T DNHD1 Nonsense_Mutation p.R463* 0.45 TCGA-E5-A4TZ-01 11 65561515 65561515 C T OVOL1 Silent p.F38F 0.37 TCGA-E5-A4TZ-01 11 66034432 66034432 G A KLC2 3'UTR 0.13 TCGA-E5-A4TZ-01 11 68191073 68191073 C T LRP5 Silent p.I1048I 0.49 TCGA-E5-A4TZ-01 11 6897945 6897945 G C OR10A4 Missense_Mutation p.E23Q 0.17 tolerated(0.08) benign(0.028) TCGA-E5-A4TZ-01 11 70049771 70049771 C T FADD Missense_Mutation p.S69F 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-E5-A4TZ-01 11 70281161 70281161 G A CTTN Missense_Mutation p.D479N 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-E5-A4TZ-01 11 72554550 72554550 C G FCHSD2 Missense_Mutation p.E491Q 0.22 tolerated(0.33) benign(0.281) TCGA-E5-A4TZ-01 11 727015 727015 G A EPS8L2 3'UTR 0.37 TCGA-E5-A4TZ-01 11 76637639 76637639 A G ACER3 Missense_Mutation p.M48V 0.06 deleterious(0.02) benign(0.004) TCGA-E5-A4TZ-01 11 76990404 76990404 T C GDPD4 Missense_Mutation p.I32V 0.49 tolerated(0.31) benign(0.131) TCGA-E5-A4TZ-01 11 7818238 7818238 C G OR5P2 Missense_Mutation p.E84D 0.59 tolerated(0.17) benign(0.012) TCGA-E5-A4TZ-01 11 89537284 89537284 A C TRIM49 Silent p.S118S 0.28 TCGA-E5-A4TZ-01 11 92534040 92534040 C G FAT3 Missense_Mutation p.Q2621E 0.20 probably_damaging(0.999) TCGA-E5-A4TZ-01 11 93487186 93487186 C G C11orf54 Missense_Mutation p.L105V 0.15 tolerated(1) benign(0.002) TCGA-E5-A4TZ-01 11 94278191 94278191 G C FUT4 Missense_Mutation p.E298Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 11 94278769 94278769 G C FUT4 Silent p.R490R 0.33 TCGA-E5-A4TZ-01 12 102107984 102107984 C G CHPT1 Silent p.L130L 0.17 TCGA-E5-A4TZ-01 12 106461078 106461078 C G NUAK1 Silent p.V496V 0.32 TCGA-E5-A4TZ-01 12 107245225 107245225 C T RIC8B Intron 0.88 TCGA-E5-A4TZ-01 12 110813827 110813827 C G ANAPC7 Intron 0.22 TCGA-E5-A4TZ-01 12 110923001 110923001 C G FAM216A Missense_Mutation p.F101L 0.83 tolerated_low_confidence(1) benign(0) TCGA-E5-A4TZ-01 12 117612051 117612051 G A FBXO21 Nonsense_Mutation p.R279* 0.55 TCGA-E5-A4TZ-01 12 122691073 122691073 G A B3GNT4 Missense_Mutation p.R92H 0.86 tolerated(0.46) probably_damaging(0.927) TCGA-E5-A4TZ-01 12 129293415 129293415 C T SLC15A4 Silent p.L392L 0.35 TCGA-E5-A4TZ-01 12 13224174 13224174 G C KIAA1467 Splice_Site p.X457_splice 0.08 TCGA-E5-A4TZ-01 12 133367876 133367876 C T GOLGA3 Missense_Mutation p.E825K 0.49 deleterious(0.02) possibly_damaging(0.759) TCGA-E5-A4TZ-01 12 14664490 14664490 C T PLBD1 Missense_Mutation p.D334N 0.05 tolerated(0.75) benign(0.005) TCGA-E5-A4TZ-01 12 31255373 31255373 G C DDX11 Missense_Mutation p.E762Q 0.06 tolerated(0.48) benign(0.021) TCGA-E5-A4TZ-01 12 417135 417135 C T KDM5A Missense_Mutation p.E1139K 0.11 deleterious(0.02) benign(0.433) TCGA-E5-A4TZ-01 12 45567974 45567974 C G PLEKHA8P1 RNA 0.56 TCGA-E5-A4TZ-01 12 48143764 48143764 C G RAPGEF3 Missense_Mutation p.E256Q 0.11 deleterious(0.03) benign(0.276) TCGA-E5-A4TZ-01 12 50528446 50528446 G A CERS5 Silent p.I304I 0.18 TCGA-E5-A4TZ-01 12 52646043 52646043 C T KRT7 3'Flank 0.13 TCGA-E5-A4TZ-01 12 53877792 53877792 C T MAP3K12 Missense_Mutation p.E421K 0.11 tolerated(0.1) benign(0.061) TCGA-E5-A4TZ-01 12 53878961 53878961 C T MAP3K12 Missense_Mutation p.E340K 0.21 deleterious(0) probably_damaging(0.996) TCGA-E5-A4TZ-01 12 54801989 54801989 A T ITGA5 Missense_Mutation p.I241N 0.90 deleterious(0) probably_damaging(0.998) TCGA-E5-A4TZ-01 12 56481823 56481823 G C ERBB3 Missense_Mutation p.D251H 0.87 deleterious(0) probably_damaging(0.978) TCGA-E5-A4TZ-01 12 56486842 56486842 G C ERBB3 Missense_Mutation p.G419A 0.92 tolerated(0.17) benign(0.277) TCGA-E5-A4TZ-01 12 56490284 56490284 C A ERBB3 Intron 0.05 TCGA-E5-A4TZ-01 12 56490299 56490299 C A ERBB3 Missense_Mutation p.L690M 0.04 deleterious(0.02) possibly_damaging(0.893) TCGA-E5-A4TZ-01 12 56491634 56491634 C G ERBB3 Silent p.L842L 0.05 TCGA-E5-A4TZ-01 12 64895226 64895226 G A TBK1 3'UTR 0.16 TCGA-E5-A4TZ-01 12 6701173 6701173 C G CHD4 Missense_Mutation p.R1000P 0.18 deleterious(0) possibly_damaging(0.638) TCGA-E5-A4TZ-01 12 6972521 6972521 C G USP5 Missense_Mutation p.P645R 0.13 deleterious(0.04) probably_damaging(0.959) TCGA-E5-A4TZ-01 12 6981305 6981305 G A SPSB2 Intron 0.15 TCGA-E5-A4TZ-01 12 75601257 75601257 G C KCNC2 Missense_Mutation p.F169L 0.15 tolerated(0.56) benign(0.082) TCGA-E5-A4TZ-01 12 76741119 76741119 C T BBS10 Missense_Mutation p.D216N 0.83 tolerated(0.18) benign(0.109) TCGA-E5-A4TZ-01 12 82752576 82752576 C T METTL25 Missense_Mutation p.P78S 0.09 tolerated(0.22) benign(0.11) TCGA-E5-A4TZ-01 12 8692528 8692528 G C CLEC4E Missense_Mutation p.S18C 0.14 tolerated(0.23) benign(0.035) TCGA-E5-A4TZ-01 12 91449191 91449191 C G KERA Missense_Mutation p.D290H 0.86 deleterious(0.01) possibly_damaging(0.897) TCGA-E5-A4TZ-01 12 94620410 94620410 C T PLXNC1 Missense_Mutation p.A607V 0.12 tolerated(0.24) benign(0.054) TCGA-E5-A4TZ-01 12 94703834 94703834 C G CCDC41 Missense_Mutation p.D621H 0.56 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 12 97078959 97078959 C T C12orf55 Missense_Mutation p.S1986L 0.17 tolerated(0.39) benign(0.188) TCGA-E5-A4TZ-01 13 100622442 100622442 G C ZIC5 Silent p.P496P 0.08 TCGA-E5-A4TZ-01 13 101322709 101322709 C G TMTC4 5'UTR 0.19 TCGA-E5-A4TZ-01 13 113976847 113976847 C A LAMP1 3'UTR 0.20 TCGA-E5-A4TZ-01 13 21557738 21557738 C T LATS2 Missense_Mutation p.D703N 0.27 deleterious(0.01) probably_damaging(1) TCGA-E5-A4TZ-01 13 23914486 23914486 G C SACS Missense_Mutation p.L1177V 0.54 benign(0.05) TCGA-E5-A4TZ-01 13 25453361 25453361 G A RNF17 Missense_Mutation p.D1604N 0.19 deleterious(0) benign(0.001) TCGA-E5-A4TZ-01 13 27829271 27829271 C G RPL21 Intron 0.16 TCGA-E5-A4TZ-01 13 28851435 28851435 G C PAN3 Missense_Mutation p.G704A 0.08 tolerated(0.45) possibly_damaging(0.551) TCGA-E5-A4TZ-01 13 39357307 39357307 G A FREM2 Silent p.L1914L 0.89 TCGA-E5-A4TZ-01 13 42793397 42793397 C A DGKH Missense_Mutation p.S1082Y 0.11 deleterious(0.01) possibly_damaging(0.541) TCGA-E5-A4TZ-01 13 46103945 46103945 G A COG3 Silent p.A750A 0.27 TCGA-E5-A4TZ-01 13 48830410 48830410 T G ITM2B Missense_Mutation p.I115S 0.15 deleterious(0) benign(0.261) TCGA-E5-A4TZ-01 13 48833016 48833019 TTTC - ITM2B Frame_Shift_Del p.F217Lfs*46 0.46 TCGA-E5-A4TZ-01 13 48951053 48951053 G C RB1 Splice_Site p.X406_splice 0.87 TCGA-E5-A4TZ-01 13 51825990 51825990 C T FAM124A Missense_Mutation p.R199W 1.00 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 13 70281831 70281831 C T KLHL1 Missense_Mutation p.V705I 0.86 tolerated(0.06) possibly_damaging(0.576) TCGA-E5-A4TZ-01 13 98667891 98667891 A G IPO5 Silent p.R829R 0.34 TCGA-E5-A4TZ-01 14 102916061 102916061 C T TECPR2 Silent p.P1057P 0.41 TCGA-E5-A4TZ-01 14 20692344 20692344 G A OR11H6 Missense_Mutation p.C159Y 0.84 tolerated(0.06) possibly_damaging(0.896) TCGA-E5-A4TZ-01 14 31778366 31778366 C G AL136418.1 5'Flank 0.07 TCGA-E5-A4TZ-01 14 58830995 58830995 G A ARID4A Missense_Mutation p.D730N 0.44 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-E5-A4TZ-01 14 58831208 58831208 G C ARID4A Missense_Mutation p.D801H 0.35 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-E5-A4TZ-01 14 58831613 58831613 G A ARID4A Missense_Mutation p.E936K 0.39 tolerated(0.09) benign(0.11) TCGA-E5-A4TZ-01 14 58832330 58832330 G C ARID4A Missense_Mutation p.K1102N 0.49 deleterious(0.03) possibly_damaging(0.501) TCGA-E5-A4TZ-01 14 67389503 67389503 C G GPHN Missense_Mutation p.L193V 0.43 deleterious(0.04) benign(0.332) TCGA-E5-A4TZ-01 14 72090947 72090947 A G SIPA1L1 Silent p.E604E 0.78 TCGA-E5-A4TZ-01 14 73959541 73959541 G A HEATR4 Intron 0.79 TCGA-E5-A4TZ-01 14 75265106 75265106 C A YLPM1 Missense_Mutation p.L1036I 0.10 probably_damaging(0.979) TCGA-E5-A4TZ-01 14 75386616 75386616 G A RPS6KL1 Missense_Mutation p.R108W 0.77 deleterious(0) probably_damaging(0.991) TCGA-E5-A4TZ-01 14 79175578 79175578 G C NRXN3 Missense_Mutation p.D41H 0.23 deleterious(0) probably_damaging(0.99) TCGA-E5-A4TZ-01 15 25924824 25924824 C G ATP10A Silent p.L1388L 0.09 TCGA-E5-A4TZ-01 15 34032152 34032152 G - RYR3 Frame_Shift_Del p.D2593Mfs*14 0.33 TCGA-E5-A4TZ-01 15 34628837 34628837 G T SLC12A6 Missense_Mutation p.F15L 0.18 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-E5-A4TZ-01 15 39881462 39881462 G A THBS1 Silent p.T611T 0.61 TCGA-E5-A4TZ-01 15 40583371 40583371 C G PLCB2 Missense_Mutation p.E962Q 0.33 tolerated(0.42) benign(0.007) TCGA-E5-A4TZ-01 15 40661479 40661479 C T DISP2 Silent p.L1056L 0.12 TCGA-E5-A4TZ-01 15 40751398 40751398 G A BAHD1 Silent p.P245P 0.38 TCGA-E5-A4TZ-01 15 41107795 41107795 C G PPP1R14D 3'UTR 0.16 TCGA-E5-A4TZ-01 15 41136955 41136955 C T SPINT1 Missense_Mutation p.S68L 0.14 deleterious(0) probably_damaging(0.993) TCGA-E5-A4TZ-01 15 41148493 41148493 G A SPINT1 Silent p.L452L 0.09 TCGA-E5-A4TZ-01 15 41149126 41149126 G T SPINT1 Nonsense_Mutation p.E515* 0.06 TCGA-E5-A4TZ-01 15 41192561 41192561 C G VPS18 Silent p.L515L 0.05 TCGA-E5-A4TZ-01 15 41194990 41194990 C G VPS18 Missense_Mutation p.F791L 0.09 deleterious(0) possibly_damaging(0.831) TCGA-E5-A4TZ-01 15 41624541 41624541 C G OIP5 Missense_Mutation p.E73D 0.30 deleterious(0.03) benign(0.272) TCGA-E5-A4TZ-01 15 41794989 41794989 C T ITPKA Missense_Mutation p.R372W 0.18 deleterious(0.01) possibly_damaging(0.908) TCGA-E5-A4TZ-01 15 42694989 42694989 C G CAPN3 Intron 0.15 TCGA-E5-A4TZ-01 15 45047491 45047491 T C TRIM69 Missense_Mutation p.C134R 0.28 deleterious(0) probably_damaging(0.996) TCGA-E5-A4TZ-01 15 51745781 51745781 G C DMXL2 Missense_Mutation p.L2867V 0.33 deleterious(0) benign(0.164) TCGA-E5-A4TZ-01 15 59501033 59501033 G A MYO1E Silent p.I459I 0.88 TCGA-E5-A4TZ-01 15 68500508 68500508 G C CLN6 Missense_Mutation p.F302L 0.25 tolerated_low_confidence(0.11) probably_damaging(0.987) TCGA-E5-A4TZ-01 15 70961771 70961771 G A UACA Nonsense_Mutation p.Q418* 0.24 TCGA-E5-A4TZ-01 15 74277055 74277055 G T STOML1 Missense_Mutation p.F316L 0.14 tolerated(0.13) possibly_damaging(0.823) TCGA-E5-A4TZ-01 15 75091619 75091619 C G CSK Missense_Mutation p.F83L 0.07 deleterious(0.03) benign(0.011) TCGA-E5-A4TZ-01 15 75309051 75309051 C G SCAMP5 Missense_Mutation p.S85C 0.09 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 15 77471437 77471437 C G PEAK1 Missense_Mutation p.E944D 0.14 tolerated(0.23) benign(0.009) TCGA-E5-A4TZ-01 15 82530717 82530717 G C EFTUD1 Missense_Mutation p.S221C 0.08 deleterious(0) probably_damaging(0.992) TCGA-E5-A4TZ-01 15 89758410 89758410 C G RLBP1 Missense_Mutation p.V136L 0.23 tolerated(0.18) benign(0.007) TCGA-E5-A4TZ-01 15 90166913 90166913 C G TICRR Missense_Mutation p.I1124M 0.04 tolerated(0.22) benign(0.005) TCGA-E5-A4TZ-01 15 90169170 90169170 C G TICRR Missense_Mutation p.S1827C 0.07 tolerated(0.14) benign(0.045) TCGA-E5-A4TZ-01 15 91341433 91341433 G C BLM Missense_Mutation p.R1075T 0.07 deleterious(0) possibly_damaging(0.603) TCGA-E5-A4TZ-01 15 91549610 91549610 C T VPS33B Missense_Mutation p.E282K 0.05 tolerated(0.06) benign(0.027) TCGA-E5-A4TZ-01 16 1129608 1129608 C T SSTR5 Missense_Mutation p.T247M 0.08 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 16 15166894 15166894 C G RRN3 Silent p.L347L 0.08 TCGA-E5-A4TZ-01 16 19838389 19838389 G C IQCK Missense_Mutation p.Q244H 0.15 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 16 20477013 20477013 G C ACSM2A Missense_Mutation p.E118Q 0.18 deleterious(0.01) probably_damaging(1) TCGA-E5-A4TZ-01 16 20975342 20975342 G A DNAH3 Silent p.D3288D 0.18 TCGA-E5-A4TZ-01 16 2349535 2349535 T G ABCA3 Splice_Site p.X538_splice 0.37 TCGA-E5-A4TZ-01 16 23724593 23724593 C T ERN2 Silent p.A20A 0.76 TCGA-E5-A4TZ-01 16 24046817 24046817 G A PRKCB Missense_Mutation p.G160S 0.69 deleterious(0.03) probably_damaging(0.95) TCGA-E5-A4TZ-01 16 25255134 25255134 T A ZKSCAN2 Silent p.G651G 0.17 TCGA-E5-A4TZ-01 16 27472739 27472739 C T GTF3C1 Missense_Mutation p.D2088N 0.27 deleterious(0.01) possibly_damaging(0.821) TCGA-E5-A4TZ-01 16 28488910 28488910 G C CLN3 Missense_Mutation p.S415C 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-E5-A4TZ-01 16 3799627 3799627 C T CREBBP Splice_Site p.X1279_splice 0.33 TCGA-E5-A4TZ-01 16 67709391 67709391 C G GFOD2 Silent p.T275T 0.24 TCGA-E5-A4TZ-01 16 68087474 68087474 C G DUS2 Silent p.L60L 0.14 TCGA-E5-A4TZ-01 16 71509744 71509744 G A ZNF19 Nonsense_Mutation p.Q236* 0.16 TCGA-E5-A4TZ-01 16 7645641 7645641 G C RBFOX1 Missense_Mutation p.E207Q 0.12 deleterious(0.03) probably_damaging(0.952) TCGA-E5-A4TZ-01 16 830088 830088 G A MSLNL Missense_Mutation p.L305F 0.33 benign(0.034) TCGA-E5-A4TZ-01 16 85143910 85143910 G A FAM92B Silent p.S59S 0.64 TCGA-E5-A4TZ-01 16 86601105 86601105 C G FOXC2 Missense_Mutation p.S55C 0.11 deleterious(0.01) possibly_damaging(0.62) TCGA-E5-A4TZ-01 16 89961497 89961497 G A TCF25 Missense_Mutation p.D294N 0.09 deleterious(0) possibly_damaging(0.903) TCGA-E5-A4TZ-01 16 90028179 90028179 C T DEF8 Silent p.Y299Y 0.09 TCGA-E5-A4TZ-01 16 9014268 9014268 C T USP7 Missense_Mutation p.D187N 0.30 tolerated(0.1) possibly_damaging(0.762) TCGA-E5-A4TZ-01 16 920734 920734 G A LMF1 Silent p.F409F 0.37 TCGA-E5-A4TZ-01 17 16705644 16705644 C T CCDC144A 3'UTR 0.15 TCGA-E5-A4TZ-01 17 17787974 17787974 G C TOM1L2 Missense_Mutation p.L159V 0.29 deleterious(0) benign(0.217) TCGA-E5-A4TZ-01 17 18028546 18028546 G A MYO15A Splice_Site p.X1252_splice 0.66 TCGA-E5-A4TZ-01 17 26851530 26851530 G A FOXN1 Missense_Mutation p.G45S 0.56 tolerated_low_confidence(0.78) benign(0.004) TCGA-E5-A4TZ-01 17 27382167 27382167 G C PIPOX Silent p.L298L 0.05 TCGA-E5-A4TZ-01 17 27959760 27959760 C G SSH2 Missense_Mutation p.E791Q 0.11 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-E5-A4TZ-01 17 28754498 28754498 C G CPD Missense_Mutation p.P647A 0.05 tolerated(0.12) possibly_damaging(0.808) TCGA-E5-A4TZ-01 17 28789485 28789485 C G CPD Nonsense_Mutation p.S1305* 0.07 TCGA-E5-A4TZ-01 17 2966077 2966077 C T OR1D5 Silent p.V275V 0.28 TCGA-E5-A4TZ-01 17 3475544 3475544 C T SHPK Splice_Site p.X702_splice 0.80 TCGA-E5-A4TZ-01 17 3477236 3477236 C T SHPK Silent p.L598L 0.86 TCGA-E5-A4TZ-01 17 37564852 37564852 G C MED1 Missense_Mutation p.P1208A 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-E5-A4TZ-01 17 38633939 38633939 C T TNS4 Silent p.E683E 0.13 TCGA-E5-A4TZ-01 17 39623357 39623357 G T KRT32 Missense_Mutation p.A74D 0.15 tolerated(0.05) benign(0.039) TCGA-E5-A4TZ-01 17 39726192 39726192 C A KRT9 Silent p.L267L 0.11 TCGA-E5-A4TZ-01 17 39923703 39923703 C G JUP Missense_Mutation p.K279N 0.09 deleterious(0.03) benign(0.32) TCGA-E5-A4TZ-01 17 40705112 40705112 C G HSD17B1 Intron 0.12 TCGA-E5-A4TZ-01 17 40825729 40825729 C T PLEKHH3 Missense_Mutation p.R141H 0.37 tolerated(0.07) unknown(0) TCGA-E5-A4TZ-01 17 40839850 40839850 C G CNTNAP1 Nonsense_Mutation p.S386* 0.09 TCGA-E5-A4TZ-01 17 42394888 42394888 G A RUNDC3A Intron 0.09 TCGA-E5-A4TZ-01 17 45297325 45297325 C T MYL4 Silent p.I73I 0.12 TCGA-E5-A4TZ-01 17 45481968 45481968 G C EFCAB13 Missense_Mutation p.L734F 0.10 deleterious(0) probably_damaging(0.997) TCGA-E5-A4TZ-01 17 46703274 46703274 G T HOXB9 Missense_Mutation p.P120T 1.00 tolerated(0.16) probably_damaging(0.989) TCGA-E5-A4TZ-01 17 48542780 48542780 G A CHAD Missense_Mutation p.S320F 0.05 deleterious(0.03) benign(0.257) TCGA-E5-A4TZ-01 17 49365435 49365435 C T UTP18 Silent p.L458L 0.86 TCGA-E5-A4TZ-01 17 49371351 49371351 C G UTP18 Missense_Mutation p.P531A 0.90 deleterious(0.01) possibly_damaging(0.821) TCGA-E5-A4TZ-01 17 57138417 57138417 G A TRIM37 Missense_Mutation p.S332L 0.20 tolerated(0.17) benign(0.217) TCGA-E5-A4TZ-01 17 58227417 58227417 C T CA4 Silent p.L8L 0.72 TCGA-E5-A4TZ-01 17 59469468 59469468 C T BCAS3 Silent p.F923F 0.19 TCGA-E5-A4TZ-01 17 60088128 60088128 G A MED13 Nonsense_Mutation p.Q584* 0.77 TCGA-E5-A4TZ-01 17 63554751 63554751 C G AXIN2 5'UTR 0.23 TCGA-E5-A4TZ-01 17 71231847 71231847 G A C17orf80 Missense_Mutation p.E76K 0.06 tolerated(1) benign(0.015) TCGA-E5-A4TZ-01 17 71231891 71231891 G C C17orf80 Silent p.V90V 0.06 TCGA-E5-A4TZ-01 17 71232370 71232370 G A C17orf80 Missense_Mutation p.R250K 0.14 tolerated(0.13) probably_damaging(0.91) TCGA-E5-A4TZ-01 17 72960689 72960689 G C HID1 Missense_Mutation p.F35L 0.15 tolerated(0.31) benign(0.364) TCGA-E5-A4TZ-01 17 73238531 73238531 C T GGA3 Silent p.V211V 0.12 TCGA-E5-A4TZ-01 17 73947643 73947643 C T ACOX1 Silent p.Q320Q 0.04 TCGA-E5-A4TZ-01 17 73956347 73956347 C A ACOX1 Missense_Mutation p.A127S 0.07 tolerated(0.15) benign(0.05) TCGA-E5-A4TZ-01 17 7577551 7577551 C A TP53 Missense_Mutation p.G244C 0.74 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 17 76482548 76482548 C G DNAH17 Missense_Mutation p.E2273Q 0.14 benign(0.374) TCGA-E5-A4TZ-01 17 76803462 76803462 C A USP36 Missense_Mutation p.G555V 0.67 deleterious(0.05) possibly_damaging(0.53) TCGA-E5-A4TZ-01 17 76816041 76816041 C T USP36 Silent p.L294L 0.10 TCGA-E5-A4TZ-01 17 79249842 79249842 G A SLC38A10 Missense_Mutation p.S280L 0.09 deleterious(0) probably_damaging(0.995) TCGA-E5-A4TZ-01 17 7951862 7951862 C G ALOX15B Missense_Mutation p.I670M 0.07 deleterious(0.02) probably_damaging(0.957) TCGA-E5-A4TZ-01 17 79954649 79954649 C T ASPSCR1 Missense_Mutation p.S287L 0.14 tolerated(0.11) unknown(0) TCGA-E5-A4TZ-01 17 80393683 80393683 G A HEXDC Missense_Mutation p.R189H 0.20 tolerated(0.6) benign(0.001) TCGA-E5-A4TZ-01 17 80708702 80708702 G A FN3K 3'UTR 0.33 TCGA-E5-A4TZ-01 17 9631616 9631616 C T USP43 Missense_Mutation p.S894L 0.75 tolerated(0.07) benign(0.004) TCGA-E5-A4TZ-01 18 12329792 12329792 G A TUBB6 3'Flank 0.23 TCGA-E5-A4TZ-01 18 13071109 13071109 C T CEP192 Missense_Mutation p.S1749L 0.52 tolerated(0.21) benign(0.22) TCGA-E5-A4TZ-01 18 21086950 21086950 G C C18orf8 Missense_Mutation p.E66Q 0.11 tolerated(0.39) benign(0.068) TCGA-E5-A4TZ-01 18 3451974 3451974 G A TGIF1 5'UTR 0.05 TCGA-E5-A4TZ-01 18 40853607 40853607 C T SYT4 Missense_Mutation p.G263R 0.42 deleterious(0) possibly_damaging(0.615) TCGA-E5-A4TZ-01 18 43796350 43796350 C T C18orf25 Silent p.V168V 0.11 TCGA-E5-A4TZ-01 18 72997507 72997507 G A TSHZ1 Missense_Mutation p.E4K 0.10 tolerated_low_confidence(0.08) benign(0.01) TCGA-E5-A4TZ-01 18 76753098 76753098 C T SALL3 Silent p.S369S 0.23 TCGA-E5-A4TZ-01 18 9559550 9559550 G A PPP4R1 Missense_Mutation p.S632F 0.05 deleterious(0) probably_damaging(0.921) TCGA-E5-A4TZ-01 19 10742774 10742774 C A SLC44A2 Missense_Mutation p.F255L 0.05 tolerated(0.36) benign(0.04) TCGA-E5-A4TZ-01 19 10823913 10823913 C T QTRT1 Silent p.D393D 0.12 TCGA-E5-A4TZ-01 19 12187240 12187240 C T ZNF844 Silent p.F435F 0.52 TCGA-E5-A4TZ-01 19 12786939 12786939 G A DHPS Silent p.Y302Y 0.20 TCGA-E5-A4TZ-01 19 18235467 18235467 G T MAST3 Nonsense_Mutation p.E292* 0.24 TCGA-E5-A4TZ-01 19 19381074 19381074 G T TM6SF2 Nonsense_Mutation p.Y103* 0.29 TCGA-E5-A4TZ-01 19 19735129 19735129 C A LPAR2 Missense_Mutation p.G331V 0.39 tolerated(0.24) benign(0.011) TCGA-E5-A4TZ-01 19 20235843 20235843 G C CTC-260E6.2 RNA 0.26 TCGA-E5-A4TZ-01 19 20308650 20308650 A T ZNF486 Silent p.P377P 0.06 TCGA-E5-A4TZ-01 19 2222482 2222482 C T DOT1L Missense_Mutation p.P1105L 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E5-A4TZ-01 19 2227055 2227055 C G DOT1L Missense_Mutation p.S1512C 0.37 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-E5-A4TZ-01 19 35232328 35232329 CT - ZNF181 Frame_Shift_Del p.Y349* 0.21 TCGA-E5-A4TZ-01 19 36124047 36124047 G A RBM42 Missense_Mutation p.V193M 0.42 tolerated(0.09) probably_damaging(0.974) TCGA-E5-A4TZ-01 19 38882731 38882731 C T SPRED3 Missense_Mutation p.A108V 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-E5-A4TZ-01 19 38948809 38948809 C T RYR1 Missense_Mutation p.R682W 0.49 probably_damaging(1) TCGA-E5-A4TZ-01 19 41889838 41889838 G A TMEM91 3'UTR 0.31 TCGA-E5-A4TZ-01 19 43234015 43234015 C G PSG3 Silent p.T301T 0.10 TCGA-E5-A4TZ-01 19 4433273 4433273 G A CHAF1A Missense_Mutation p.E804K 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-E5-A4TZ-01 19 44352525 44352525 G C ZNF283 Missense_Mutation p.R591T 0.09 deleterious(0.01) benign(0.369) TCGA-E5-A4TZ-01 19 44352541 44352541 G A ZNF283 Silent p.E596E 0.07 TCGA-E5-A4TZ-01 19 44564956 44564956 G C ZNF223 Missense_Mutation p.W66S 0.11 deleterious(0.02) possibly_damaging(0.558) TCGA-E5-A4TZ-01 19 46142278 46142278 C G EML2 Intron 0.19 TCGA-E5-A4TZ-01 19 46891955 46891955 G A PPP5C Missense_Mutation p.R441H 0.25 deleterious(0) benign(0.268) TCGA-E5-A4TZ-01 19 47597789 47597789 C G ZC3H4 Missense_Mutation p.E80Q 0.04 probably_damaging(0.977) TCGA-E5-A4TZ-01 19 48556259 48556259 C A PLA2G4C Silent p.V535V 0.14 TCGA-E5-A4TZ-01 19 49937246 49937246 G C SLC17A7 Nonsense_Mutation p.S232* 0.48 TCGA-E5-A4TZ-01 19 50214030 50214030 C A CPT1C Missense_Mutation p.F594L 0.11 deleterious(0) probably_damaging(0.996) TCGA-E5-A4TZ-01 19 50306555 50306555 C G AP2A1 Missense_Mutation p.L778V 0.16 tolerated(0.32) benign(0.007) TCGA-E5-A4TZ-01 19 5138051 5138051 C T KDM4B Silent p.I840I 0.12 TCGA-E5-A4TZ-01 19 53384083 53384083 C T ZNF320 Silent p.R432R 0.43 TCGA-E5-A4TZ-01 19 55085838 55085838 C T LILRA2 Silent p.L47L 0.45 TCGA-E5-A4TZ-01 19 55494386 55494386 C T NLRP2 Silent p.G440G 0.43 TCGA-E5-A4TZ-01 19 58640513 58640513 C T ZNF329 Missense_Mutation p.G120S 0.10 tolerated(0.32) benign(0.007) TCGA-E5-A4TZ-01 19 58846238 58846238 G A ZSCAN22 Missense_Mutation p.E24K 0.08 tolerated(0.12) benign(0) TCGA-E5-A4TZ-01 19 7172370 7172370 G C INSR Missense_Mutation p.S400C 0.19 deleterious(0) probably_damaging(0.993) TCGA-E5-A4TZ-01 19 7676019 7676019 C T CAMSAP3 Missense_Mutation p.S390F 0.12 tolerated(0.71) benign(0.213) TCGA-E5-A4TZ-01 19 9017493 9017493 C A MUC16 Nonsense_Mutation p.G12611* 0.15 TCGA-E5-A4TZ-01 1 101190238 101190238 C T VCAM1 Silent p.G240G 0.62 TCGA-E5-A4TZ-01 1 114454778 114454778 G C DCLRE1B Missense_Mutation p.D522H 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 1 115147542 115147542 C T DENND2C Splice_Site p.X556_splice 0.26 TCGA-E5-A4TZ-01 1 11561902 11561902 G A PTCHD2 Missense_Mutation p.A285T 0.09 tolerated(0.19) possibly_damaging(0.691) TCGA-E5-A4TZ-01 1 117561065 117561065 G C CD101 Missense_Mutation p.E634Q 0.21 deleterious(0.01) probably_damaging(0.939) TCGA-E5-A4TZ-01 1 1179464 1179464 G C FAM132A Nonsense_Mutation p.S134* 0.27 TCGA-E5-A4TZ-01 1 1179864 1179864 G C FAM132A Nonsense_Mutation p.S64* 0.24 TCGA-E5-A4TZ-01 1 120906266 120906266 C T RP11-439A17.4 5'Flank 0.30 TCGA-E5-A4TZ-01 1 12887240 12887240 C A PRAMEF11 Missense_Mutation p.R206L 0.30 tolerated(0.12) benign(0.016) TCGA-E5-A4TZ-01 1 12979810 12979810 C T PRAMEF7 Silent p.F334F 0.05 TCGA-E5-A4TZ-01 1 145115895 145115895 T C SEC22B RNA 0.09 TCGA-E5-A4TZ-01 1 151110229 151110229 G A SEMA6C Silent p.F238F 0.10 TCGA-E5-A4TZ-01 1 152277164 152277164 G T FLG Missense_Mutation p.H3400N 0.18 unknown(0) TCGA-E5-A4TZ-01 1 153905783 153905783 G A DENND4B Silent p.L1115L 0.21 TCGA-E5-A4TZ-01 1 155240738 155240738 C T CLK2 Missense_Mutation p.E11K 0.15 deleterious(0.01) unknown(0) TCGA-E5-A4TZ-01 1 156815855 156815855 C T INSRR Missense_Mutation p.V623M 0.22 tolerated(0.14) probably_damaging(0.981) TCGA-E5-A4TZ-01 1 158450267 158450267 C A OR10R2 Missense_Mutation p.D200E 0.48 deleterious(0.01) probably_damaging(1) TCGA-E5-A4TZ-01 1 158641148 158641148 C A SPTA1 Missense_Mutation p.Q528H 0.27 tolerated(0.1) benign(0.12) TCGA-E5-A4TZ-01 1 15911258 15911258 C T AGMAT Missense_Mutation p.E69K 0.33 tolerated(0.17) benign(0.371) TCGA-E5-A4TZ-01 1 160105237 160105237 C G ATP1A2 Missense_Mutation p.A710G 0.33 deleterious(0.02) possibly_damaging(0.58) TCGA-E5-A4TZ-01 1 16350395 16350395 G C CLCNKA Missense_Mutation p.M67I 0.10 deleterious(0) possibly_damaging(0.883) TCGA-E5-A4TZ-01 1 169578883 169578883 C G SELP Missense_Mutation p.D398H 0.13 deleterious(0.05) benign(0.099) TCGA-E5-A4TZ-01 1 179851902 179851902 G C TOR1AIP1 Missense_Mutation p.E89Q 0.08 deleterious_low_confidence(0.01) benign(0.343) TCGA-E5-A4TZ-01 1 181726127 181726127 G T CACNA1E Missense_Mutation p.E1398D 0.20 deleterious(0) possibly_damaging(0.523) TCGA-E5-A4TZ-01 1 19419955 19419955 C A UBR4 Missense_Mutation p.D4655Y 0.15 probably_damaging(0.998) TCGA-E5-A4TZ-01 1 19488175 19488175 C A UBR4 Missense_Mutation p.A1695S 0.31 probably_damaging(0.999) TCGA-E5-A4TZ-01 1 205116573 205116573 C T DSTYK 3'UTR 0.29 TCGA-E5-A4TZ-01 1 205797618 205797618 G A PM20D1 3'UTR 0.31 TCGA-E5-A4TZ-01 1 205904902 205904902 G C SLC26A9 Missense_Mutation p.S16C 0.70 deleterious(0) possibly_damaging(0.823) TCGA-E5-A4TZ-01 1 206241637 206241637 T - C1orf186 Frame_Shift_Del p.Q51Rfs*18 0.14 TCGA-E5-A4TZ-01 1 210012460 210012460 C A DIEXF Missense_Mutation p.D423E 0.10 deleterious(0) probably_damaging(0.994) TCGA-E5-A4TZ-01 1 212799271 212799271 C T FAM71A Missense_Mutation p.S351F 0.08 tolerated(0.12) benign(0.019) TCGA-E5-A4TZ-01 1 214507617 214507617 A - SMYD2 Frame_Shift_Del p.E396Dfs*10 0.16 TCGA-E5-A4TZ-01 1 214557384 214557384 G A PTPN14 Missense_Mutation p.S605L 0.16 deleterious(0) probably_damaging(0.996) TCGA-E5-A4TZ-01 1 21798135 21798135 G C NBPF3 Missense_Mutation p.D174H 0.30 deleterious(0) probably_damaging(0.953) TCGA-E5-A4TZ-01 1 22181230 22181230 C G HSPG2 Missense_Mutation p.K2054N 0.29 benign(0.375) TCGA-E5-A4TZ-01 1 226253377 226253377 G A H3F3A Missense_Mutation p.R50H 0.11 deleterious_low_confidence(0.03) benign(0.001) TCGA-E5-A4TZ-01 1 241951227 241951227 G T WDR64 Missense_Mutation p.D918Y 0.15 deleterious(0.01) probably_damaging(1) TCGA-E5-A4TZ-01 1 244724185 244724185 C T C1orf101 Silent p.V415V 0.09 TCGA-E5-A4TZ-01 1 26648783 26648784 CC A AIM1L Frame_Shift_Del p.G716Yfs*42 0.12 TCGA-E5-A4TZ-01 1 27106331 27106331 G A ARID1A Missense_Mutation p.C1981Y 0.66 probably_damaging(0.997) TCGA-E5-A4TZ-01 1 27223950 27223950 C A GPATCH3 Nonsense_Mutation p.E240* 0.10 TCGA-E5-A4TZ-01 1 28285004 28285004 C A SMPDL3B Missense_Mutation p.F341L 0.06 deleterious(0) benign(0.146) TCGA-E5-A4TZ-01 1 33145306 33145306 G C RBBP4 Nonstop_Mutation p.*426Yext*7 0.15 TCGA-E5-A4TZ-01 1 36479639 36479639 G A AGO3 Missense_Mutation p.E466K 0.09 tolerated(0.46) benign(0.017) TCGA-E5-A4TZ-01 1 38323111 38323111 G C MTF1 Missense_Mutation p.L74V 0.07 tolerated(0.06) possibly_damaging(0.459) TCGA-E5-A4TZ-01 1 38409338 38409338 G A INPP5B Missense_Mutation p.S85F 0.63 deleterious(0.01) benign(0.182) TCGA-E5-A4TZ-01 1 39903487 39903487 G C MACF1 Missense_Mutation p.E3950D 0.13 benign(0.105) TCGA-E5-A4TZ-01 1 46727052 46727052 G A RAD54L Missense_Mutation p.D296N 0.34 deleterious(0) probably_damaging(0.996) TCGA-E5-A4TZ-01 1 51869162 51869162 C A EPS15 Nonsense_Mutation p.E574* 0.15 TCGA-E5-A4TZ-01 1 52956428 52956428 A T ZCCHC11 Missense_Mutation p.V455D 0.15 deleterious(0) probably_damaging(0.995) TCGA-E5-A4TZ-01 1 62916591 62916591 C T USP1 Missense_Mutation p.S766F 0.06 deleterious(0.01) possibly_damaging(0.729) TCGA-E5-A4TZ-01 1 6530629 6530629 C T PLEKHG5 Silent p.A618A 0.39 TCGA-E5-A4TZ-01 1 70291507 70291507 T C LRRC7 Silent p.S128S 0.20 TCGA-E5-A4TZ-01 1 70716336 70716336 G A SRSF11 Missense_Mutation p.E435K 0.06 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-E5-A4TZ-01 1 74801750 74801750 G C FPGT-TNNI3K Missense_Mutation p.G314A 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-E5-A4TZ-01 1 8419940 8419940 C T RERE Missense_Mutation p.E1168K 0.08 unknown(0) TCGA-E5-A4TZ-01 1 8617577 8617577 C G RERE Missense_Mutation p.K176N 0.23 probably_damaging(0.977) TCGA-E5-A4TZ-01 1 91403213 91403213 C G ZNF644 Missense_Mutation p.E1173Q 0.15 tolerated(0.17) probably_damaging(0.997) TCGA-E5-A4TZ-01 1 91403276 91403276 C T ZNF644 Missense_Mutation p.E1152K 0.11 tolerated(0.24) benign(0.289) TCGA-E5-A4TZ-01 1 91733380 91733380 C A HFM1 Nonsense_Mutation p.E1269* 0.43 TCGA-E5-A4TZ-01 1 94048001 94048003 AGG - BCAR3 In_Frame_Del p.S514del 0.27 TCGA-E5-A4TZ-01 1 9793501 9793501 T A CLSTN1 Silent p.S795S 0.12 TCGA-E5-A4TZ-01 20 23065262 23065262 G C CD93 Missense_Mutation p.S523C 0.10 tolerated(0.05) possibly_damaging(0.599) TCGA-E5-A4TZ-01 20 30784361 30784361 C G PLAGL2 Missense_Mutation p.G462A 0.11 tolerated(0.77) probably_damaging(0.981) TCGA-E5-A4TZ-01 20 33711796 33711796 G C EDEM2 Silent p.L337L 0.06 TCGA-E5-A4TZ-01 20 39802893 39802893 G A PLCG1 Missense_Mutation p.E1259K 0.04 tolerated(0.27) benign(0.285) TCGA-E5-A4TZ-01 20 45188622 45188622 T A SLC13A3 3'UTR 0.08 TCGA-E5-A4TZ-01 20 47864573 47864573 C A ZNFX1 Missense_Mutation p.R1663L 0.15 deleterious(0.02) benign(0.159) TCGA-E5-A4TZ-01 20 48497556 48497556 C T SLC9A8 Silent p.F434F 0.09 TCGA-E5-A4TZ-01 20 57597933 57597933 G A TUBB1 Missense_Mutation p.D31N 0.55 tolerated_low_confidence(0.09) probably_damaging(0.992) TCGA-E5-A4TZ-01 20 57769599 57769599 C G ZNF831 Silent p.P1175P 0.57 TCGA-E5-A4TZ-01 20 60791551 60791551 G A HRH3 Silent p.G283G 0.20 TCGA-E5-A4TZ-01 21 11049492 11049492 G T BAGE2 RNA 0.11 TCGA-E5-A4TZ-01 21 32185383 32185383 G A KRTAP8-1 Silent p.F52F 0.37 TCGA-E5-A4TZ-01 21 34113884 34113884 T G PAXBP1 Intron 0.25 TCGA-E5-A4TZ-01 21 35514791 35514791 G C MRPS6 Missense_Mutation p.R90T 0.11 deleterious(0) probably_damaging(0.998) TCGA-E5-A4TZ-01 21 42080530 42080530 C T DSCAM Missense_Mutation p.G71R 0.41 tolerated(0.14) probably_damaging(0.988) TCGA-E5-A4TZ-01 21 42751982 42751982 A C MX2 Missense_Mutation p.K161Q 0.18 deleterious(0.05) possibly_damaging(0.877) TCGA-E5-A4TZ-01 21 43510466 43510466 A G UMODL1 Silent p.A283A 0.24 TCGA-E5-A4TZ-01 21 44433252 44433252 C G PKNOX1 Missense_Mutation p.F142L 0.14 deleterious(0) probably_damaging(0.97) TCGA-E5-A4TZ-01 22 18613931 18613931 C G TUBA8 3'UTR 0.15 TCGA-E5-A4TZ-01 22 20102494 20102494 G A TRMT2A Silent p.H333H 0.45 TCGA-E5-A4TZ-01 22 29153142 29153142 G A HSCB Silent p.K231K 0.20 TCGA-E5-A4TZ-01 22 31489599 31489599 G A SMTN Intron 0.46 TCGA-E5-A4TZ-01 22 31927106 31927106 C G SFI1 Missense_Mutation p.S110C 0.23 deleterious(0) probably_damaging(0.922) TCGA-E5-A4TZ-01 22 32587017 32587017 C T RFPL2 Silent p.P293P 0.33 TCGA-E5-A4TZ-01 22 36682784 36682784 C T MYH9 Missense_Mutation p.E1681K 0.19 possibly_damaging(0.713) TCGA-E5-A4TZ-01 22 37499693 37499693 G T TMPRSS6 5'UTR 0.22 TCGA-E5-A4TZ-01 22 38882080 38882080 G C DDX17 Missense_Mutation p.R686G 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.796) TCGA-E5-A4TZ-01 22 40257813 40257813 C A ENTHD1 Missense_Mutation p.E183D 0.48 deleterious(0.02) possibly_damaging(0.772) TCGA-E5-A4TZ-01 22 40661910 40661910 G A TNRC6B Missense_Mutation p.G559E 0.29 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 22 40661958 40661958 G C TNRC6B Missense_Mutation p.G575A 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A4TZ-01 22 40662949 40662949 G C TNRC6B Missense_Mutation p.K905N 0.43 deleterious(0.03) probably_damaging(0.997) TCGA-E5-A4TZ-01 22 41856450 41856450 C G PHF5A Missense_Mutation p.K95N 0.05 deleterious(0) possibly_damaging(0.606) TCGA-E5-A4TZ-01 22 43026923 43026923 C T CYB5R3 Missense_Mutation p.D133N 0.26 deleterious(0.03) probably_damaging(0.966) TCGA-E5-A4TZ-01 22 50512736 50512736 G C MLC1 Missense_Mutation p.S208C 0.23 tolerated_low_confidence(0.07) benign(0.02) TCGA-E5-A4TZ-01 2 122205854 122205854 C G CLASP1 Missense_Mutation p.R580T 0.09 deleterious(0.04) benign(0.187) TCGA-E5-A4TZ-01 2 160605378 160605378 C G MARCH7 Nonsense_Mutation p.S526* 0.05 TCGA-E5-A4TZ-01 2 165953900 165953900 C T SCN3A Missense_Mutation p.M1367I 0.10 tolerated(0.28) benign(0.001) TCGA-E5-A4TZ-01 2 166848075 166848075 G A SCN1A Nonsense_Mutation p.Q1904* 0.19 TCGA-E5-A4TZ-01 2 170411686 170411686 G A FASTKD1 Silent p.L388L 0.19 TCGA-E5-A4TZ-01 2 171323173 171323173 G A MYO3B Missense_Mutation p.R989H 0.11 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 2 175614815 175614815 C T CHRNA1 Silent p.T312T 0.10 TCGA-E5-A4TZ-01 2 179395896 179395896 G C TTN Missense_Mutation p.S35149C 0.13 TCGA-E5-A4TZ-01 2 207833019 207833019 G C CPO Missense_Mutation p.L270F 0.57 deleterious(0) probably_damaging(0.965) TCGA-E5-A4TZ-01 2 211525318 211525318 A G CPS1 Missense_Mutation p.D1295G 0.82 tolerated(0.06) benign(0.031) TCGA-E5-A4TZ-01 2 217279832 217279832 A G SMARCAL1 Silent p.K135K 0.06 TCGA-E5-A4TZ-01 2 220047205 220047205 G C FAM134A Missense_Mutation p.D496H 0.19 deleterious(0) probably_damaging(0.998) TCGA-E5-A4TZ-01 2 223161757 223161757 C A PAX3 Silent p.L87L 0.12 TCGA-E5-A4TZ-01 2 223161758 223161758 A C PAX3 Missense_Mutation p.L87R 0.10 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 2 224849561 224849561 C A SERPINE2 Silent p.P276P 0.80 TCGA-E5-A4TZ-01 2 231282316 231282316 G C SP100 Missense_Mutation p.E15Q 0.12 tolerated_low_confidence(0.08) benign(0.032) TCGA-E5-A4TZ-01 2 239002507 239002507 G A SCLY Silent p.A317A 0.50 TCGA-E5-A4TZ-01 2 27552049 27552049 C T GTF3C2 Missense_Mutation p.E660K 0.05 deleterious(0) benign(0.434) TCGA-E5-A4TZ-01 2 32474974 32474974 G A NLRC4 Silent p.F653F 0.12 TCGA-E5-A4TZ-01 2 32733132 32733132 C T BIRC6 Silent p.L3262L 0.15 TCGA-E5-A4TZ-01 2 43520182 43520182 G A THADA Missense_Mutation p.R1537W 0.15 deleterious(0.01) possibly_damaging(0.462) TCGA-E5-A4TZ-01 2 46583391 46583391 G A EPAS1 Missense_Mutation p.D107N 0.16 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 2 54096654 54096654 T C PSME4 Missense_Mutation p.T1708A 0.16 deleterious(0.02) benign(0.145) TCGA-E5-A4TZ-01 2 55826172 55826172 G A SMEK2 Nonsense_Mutation p.Q101* 0.12 TCGA-E5-A4TZ-01 2 61505560 61505560 C G USP34 Missense_Mutation p.D1759H 0.19 deleterious(0) possibly_damaging(0.695) TCGA-E5-A4TZ-01 2 61528530 61528530 C G USP34 Missense_Mutation p.D1293H 0.16 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 2 61719598 61719598 C T XPO1 Missense_Mutation p.E529K 0.14 deleterious(0.04) probably_damaging(0.961) TCGA-E5-A4TZ-01 2 669506 669506 G A TMEM18 3'UTR 0.13 TCGA-E5-A4TZ-01 2 80530753 80530753 C A LRRTM1 Silent p.L64L 0.72 TCGA-E5-A4TZ-01 2 90153783 90153783 C G IGKV3D-15 Silent p.L13L 0.06 TCGA-E5-A4TZ-01 2 97757250 97757250 G T FAHD2B Missense_Mutation p.T65K 0.31 tolerated(0.31) possibly_damaging(0.458) TCGA-E5-A4TZ-01 2 98451339 98451339 G C TMEM131 Missense_Mutation p.S285C 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-E5-A4TZ-01 2 99220588 99220588 C A COA5 Nonsense_Mutation p.E56* 0.14 TCGA-E5-A4TZ-01 3 108724021 108724021 C T MORC1 Missense_Mutation p.E637K 0.36 tolerated(0.09) benign(0.037) TCGA-E5-A4TZ-01 3 110852704 110852704 G A PVRL3 Missense_Mutation p.R431K 0.03 tolerated(0.12) benign(0.008) TCGA-E5-A4TZ-01 3 113956017 113956017 C T ZNF80 5'UTR 0.15 TCGA-E5-A4TZ-01 3 119585468 119585468 G A GSK3B Missense_Mutation p.S306L 0.09 tolerated_low_confidence(0.28) benign(0.001) TCGA-E5-A4TZ-01 3 120067674 120067674 G A LRRC58 Silent p.L139L 0.40 TCGA-E5-A4TZ-01 3 121305253 121305253 C T ARGFX Nonsense_Mutation p.Q252* 0.21 TCGA-E5-A4TZ-01 3 128971204 128971204 G A COPG1 Silent p.Q57Q 0.38 TCGA-E5-A4TZ-01 3 132440854 132440854 C G NPHP3 Missense_Mutation p.E116Q 0.13 tolerated(0.06) probably_damaging(0.977) TCGA-E5-A4TZ-01 3 140401940 140401940 C T TRIM42 Silent p.L326L 0.21 TCGA-E5-A4TZ-01 3 141164461 141164461 G C ZBTB38 Missense_Mutation p.L1077F 0.10 tolerated(0.09) probably_damaging(0.998) TCGA-E5-A4TZ-01 3 147128304 147128304 G A ZIC1 Silent p.T135T 0.58 TCGA-E5-A4TZ-01 3 14724220 14724220 C G C3orf20 5'UTR 0.11 TCGA-E5-A4TZ-01 3 15642949 15642949 C G HACL1 Missense_Mutation p.E8Q 0.13 tolerated_low_confidence(0.29) benign(0.007) TCGA-E5-A4TZ-01 3 16306365 16306365 C T DPH3 Missense_Mutation p.E7K 0.09 tolerated(0.07) possibly_damaging(0.449) TCGA-E5-A4TZ-01 3 169500368 169500368 G T MYNN Missense_Mutation p.D446Y 0.05 deleterious(0.01) possibly_damaging(0.797) TCGA-E5-A4TZ-01 3 170856088 170856088 T C TNIK Silent p.L500L 0.40 TCGA-E5-A4TZ-01 3 180325518 180325518 G C TTC14 Missense_Mutation p.E419Q 0.14 tolerated(0.29) benign(0.093) TCGA-E5-A4TZ-01 3 183493769 183493769 G T YEATS2 Missense_Mutation p.G812V 0.15 tolerated_low_confidence(0.12) benign(0.12) TCGA-E5-A4TZ-01 3 183695351 183695351 G C ABCC5 Nonsense_Mutation p.S453* 0.20 TCGA-E5-A4TZ-01 3 183695389 183695389 G A ABCC5 Silent p.F440F 0.21 TCGA-E5-A4TZ-01 3 190341199 190341199 A G IL1RAP Missense_Mutation p.E257G 0.25 deleterious(0.03) benign(0.419) TCGA-E5-A4TZ-01 3 3078873 3078873 C T CNTN4 Silent p.L651L 0.14 TCGA-E5-A4TZ-01 3 32568320 32568320 T C DYNC1LI1 Missense_Mutation p.T515A 0.38 deleterious(0.04) benign(0.007) TCGA-E5-A4TZ-01 3 33406161 33406161 G A FBXL2 Silent p.L80L 0.13 TCGA-E5-A4TZ-01 3 36534667 36534667 G C STAC Missense_Mutation p.E238Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A4TZ-01 3 38278396 38278396 G A OXSR1 Missense_Mutation p.D340N 0.24 deleterious(0.05) probably_damaging(0.99) TCGA-E5-A4TZ-01 3 38651274 38651274 C T SCN5A Silent p.E295E 0.06 TCGA-E5-A4TZ-01 3 40557467 40557467 G C ZNF620 Missense_Mutation p.D128H 0.33 tolerated(0.37) benign(0.055) TCGA-E5-A4TZ-01 3 42659089 42659089 C G NKTR Nonsense_Mutation p.S29* 0.11 TCGA-E5-A4TZ-01 3 4345157 4345157 G T SETMAR Nonsense_Mutation p.E35* 0.26 TCGA-E5-A4TZ-01 3 44894209 44894209 G C KIF15 Missense_Mutation p.K1383N 0.45 tolerated_low_confidence(0.19) benign(0.147) TCGA-E5-A4TZ-01 3 46501218 46501218 C T LTF Missense_Mutation p.M45I 0.10 tolerated(0.05) benign(0.023) TCGA-E5-A4TZ-01 3 47018262 47018262 C T CCDC12 5'UTR 0.26 TCGA-E5-A4TZ-01 3 48671131 48671131 C G SLC26A6 Intron 0.33 TCGA-E5-A4TZ-01 3 49114440 49114440 G A QRICH1 Missense_Mutation p.S4F 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.485) TCGA-E5-A4TZ-01 3 49159409 49159409 C G LAMB2 Missense_Mutation p.D1631H 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-E5-A4TZ-01 3 49167710 49167710 G C LAMB2 Missense_Mutation p.F393L 0.26 deleterious(0) possibly_damaging(0.588) TCGA-E5-A4TZ-01 3 49169079 49169079 G C LAMB2 Silent p.S179S 0.23 TCGA-E5-A4TZ-01 3 49728874 49728874 G A RNF123 Silent p.K33K 0.10 TCGA-E5-A4TZ-01 3 49739787 49739787 C T RNF123 Silent p.I526I 0.03 TCGA-E5-A4TZ-01 3 51897098 51897098 G T IQCF2 Missense_Mutation p.R69S 0.09 tolerated(0.12) benign(0.078) TCGA-E5-A4TZ-01 3 52088053 52088053 G A DUSP7 Silent p.F285F 0.22 TCGA-E5-A4TZ-01 3 57131752 57131752 C T IL17RD Missense_Mutation p.R660Q 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-E5-A4TZ-01 3 63638439 63638439 A G SNTN Missense_Mutation p.T26A 0.45 tolerated(0.37) benign(0.009) TCGA-E5-A4TZ-01 3 89456492 89456492 C G EPHA3 Silent p.L556L 0.11 TCGA-E5-A4TZ-01 3 9068649 9068649 C T SRGAP3 Missense_Mutation p.E524K 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-E5-A4TZ-01 4 100496076 100496076 C G MTTP Missense_Mutation p.L4V 0.12 tolerated(0.08) benign(0.345) TCGA-E5-A4TZ-01 4 114239697 114239697 G C ANK2 Missense_Mutation p.E941Q 0.21 probably_damaging(0.996) TCGA-E5-A4TZ-01 4 120192484 120192484 C G USP53 Missense_Mutation p.S490C 0.30 deleterious(0) possibly_damaging(0.681) TCGA-E5-A4TZ-01 4 122740632 122740632 C T CCNA2 Silent p.L299L 0.07 TCGA-E5-A4TZ-01 4 126241692 126241692 A - FAT4 Frame_Shift_Del p.K1377Nfs*12 0.18 TCGA-E5-A4TZ-01 4 140441498 140441498 G C SETD7 Nonsense_Mutation p.S232* 0.24 TCGA-E5-A4TZ-01 4 147215141 147215141 G A SLC10A7 Missense_Mutation p.T221M 0.10 tolerated(0.07) probably_damaging(0.993) TCGA-E5-A4TZ-01 4 154517455 154517455 C G KIAA0922 Missense_Mutation p.L681V 0.15 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 4 17963571 17963571 C G LCORL Missense_Mutation p.E129Q 0.52 tolerated(0.35) probably_damaging(0.986) TCGA-E5-A4TZ-01 4 183603109 183603109 T A TENM3 Silent p.L659L 0.23 TCGA-E5-A4TZ-01 4 186329556 186329556 G C UFSP2 Missense_Mutation p.H289D 0.06 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 4 187524171 187524171 C G FAT1 Missense_Mutation p.V3790L 0.07 benign(0.001) TCGA-E5-A4TZ-01 4 37863158 37863158 G A PGM2 Silent p.L588L 0.20 TCGA-E5-A4TZ-01 4 57890219 57890219 C T POLR2B Missense_Mutation p.P969S 0.25 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 4 62903477 62903477 G A LPHN3 Missense_Mutation p.R1139Q 0.70 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A4TZ-01 4 74453608 74453608 C G RASSF6 Missense_Mutation p.E143Q 0.14 tolerated(0.05) possibly_damaging(0.756) TCGA-E5-A4TZ-01 4 77288825 77288825 C G CCDC158 Missense_Mutation p.L484F 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-E5-A4TZ-01 4 88394924 88394924 C G SPARCL1 3'UTR 0.65 TCGA-E5-A4TZ-01 4 96761720 96761720 G A PDHA2 Missense_Mutation p.R140K 0.32 tolerated(0.43) benign(0.019) TCGA-E5-A4TZ-01 5 114573558 114573558 C T PGGT1B Missense_Mutation p.G159E 0.88 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 5 131670448 131670448 G C SLC22A4 Missense_Mutation p.D362H 0.69 deleterious(0) possibly_damaging(0.537) TCGA-E5-A4TZ-01 5 131670480 131670480 G C SLC22A4 Silent p.L372L 0.67 TCGA-E5-A4TZ-01 5 13776571 13776571 C A DNAH5 Missense_Mutation p.W3117L 0.21 possibly_damaging(0.637) TCGA-E5-A4TZ-01 5 140228584 140228584 C T PCDHA9 Silent p.L168L 0.13 TCGA-E5-A4TZ-01 5 140263135 140263135 C - PCDHA13 Frame_Shift_Del p.R428Gfs*21 0.44 TCGA-E5-A4TZ-01 5 140308719 140308719 G C PCDHAC1 Missense_Mutation p.E748Q 0.19 tolerated(0.06) benign(0.07) TCGA-E5-A4TZ-01 5 140476531 140476531 C T PCDHB2 Silent p.S719S 0.61 TCGA-E5-A4TZ-01 5 140480590 140480590 C G PCDHB3 Missense_Mutation p.N119K 0.63 deleterious_low_confidence(0.01) benign(0.002) TCGA-E5-A4TZ-01 5 140579629 140579629 G T PCDHB11 Missense_Mutation p.E94D 0.69 tolerated_low_confidence(0.09) benign(0.01) TCGA-E5-A4TZ-01 5 140627003 140627003 G A PCDHB15 Silent p.A619A 0.18 TCGA-E5-A4TZ-01 5 140744334 140744334 C T PCDHGA5 Missense_Mutation p.A146V 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.625) TCGA-E5-A4TZ-01 5 150935959 150935959 G T FAT2 Silent p.L1193L 0.19 TCGA-E5-A4TZ-01 5 15500782 15500782 C T FBXL7 5'UTR 0.24 TCGA-E5-A4TZ-01 5 156920125 156920125 G A ADAM19 Silent p.N588N 0.13 TCGA-E5-A4TZ-01 5 167645134 167645134 G A TENM2 Missense_Mutation p.R1413H 0.17 tolerated(0.1) benign(0.059) TCGA-E5-A4TZ-01 5 169463548 169463548 G A DOCK2 Silent p.E1218E 0.80 TCGA-E5-A4TZ-01 5 170669745 170669745 T C RANBP17 Silent p.H899H 0.10 TCGA-E5-A4TZ-01 5 175740741 175740741 G C SIMC1 Missense_Mutation p.Q160H 0.21 deleterious(0) probably_damaging(0.983) TCGA-E5-A4TZ-01 5 176829433 176829433 C G F12 Missense_Mutation p.E570Q 0.09 deleterious(0) probably_damaging(0.993) TCGA-E5-A4TZ-01 5 179044087 179044089 AAG - HNRNPH1 In_Frame_Del p.F360del 0.17 TCGA-E5-A4TZ-01 5 179991566 179991566 G C CNOT6 Missense_Mutation p.D155H 0.24 deleterious(0) probably_damaging(0.977) TCGA-E5-A4TZ-01 5 34826499 34826499 C G RAI14 Missense_Mutation p.S908C 0.08 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 5 37364033 37364033 G T NUP155 Missense_Mutation p.L117I 0.15 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 5 41927313 41927313 G C FBXO4 Missense_Mutation p.E130Q 0.10 tolerated(0.08) possibly_damaging(0.698) TCGA-E5-A4TZ-01 5 70812069 70812069 G C BDP1 Missense_Mutation p.D1611H 0.23 deleterious(0.02) probably_damaging(0.912) TCGA-E5-A4TZ-01 5 73168940 73168940 C T ARHGEF28 Missense_Mutation p.P895S 0.84 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 5 74096840 74096840 G C FAM169A Missense_Mutation p.S323C 0.15 deleterious(0) possibly_damaging(0.579) TCGA-E5-A4TZ-01 5 74096853 74096853 G T FAM169A Missense_Mutation p.H319N 0.13 tolerated(0.64) benign(0.005) TCGA-E5-A4TZ-01 5 75914061 75914061 G T F2RL2 Missense_Mutation p.N157K 0.77 deleterious(0) probably_damaging(0.993) TCGA-E5-A4TZ-01 5 76254781 76254781 T C CRHBP Intron 0.87 TCGA-E5-A4TZ-01 5 80548634 80548634 C G CKMT2 Missense_Mutation p.I91M 0.27 deleterious(0.02) possibly_damaging(0.804) TCGA-E5-A4TZ-01 6 107069332 107069332 G A RTN4IP1 Missense_Mutation p.L155F 0.19 tolerated(0.16) benign(0.131) TCGA-E5-A4TZ-01 6 125330362 125330362 C G RNF217 5'UTR 0.07 TCGA-E5-A4TZ-01 6 131894467 131894467 C G ARG1 Missense_Mutation p.F15L 0.34 deleterious(0.05) probably_damaging(1) TCGA-E5-A4TZ-01 6 132190621 132190621 A G ENPP1 Missense_Mutation p.Y466C 0.85 deleterious(0.03) probably_damaging(0.987) TCGA-E5-A4TZ-01 6 151243416 151243416 C T MTHFD1L Nonsense_Mutation p.Q354* 0.22 TCGA-E5-A4TZ-01 6 155565142 155565142 C G TIAM2 Intron 0.25 TCGA-E5-A4TZ-01 6 29012239 29012239 C T OR2W1 Missense_Mutation p.M238I 0.34 tolerated(0.08) benign(0.002) TCGA-E5-A4TZ-01 6 29693015 29693015 G C HLA-F Missense_Mutation p.G273A 0.27 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-E5-A4TZ-01 6 30708549 30708549 G C FLOT1 Missense_Mutation p.F127L 0.17 deleterious(0.02) probably_damaging(0.978) TCGA-E5-A4TZ-01 6 31700070 31700070 G C CLIC1 Missense_Mutation p.S163C 0.26 deleterious(0) probably_damaging(0.977) TCGA-E5-A4TZ-01 6 31785354 31785354 C G HSPA1A Missense_Mutation p.I607M 0.20 tolerated_low_confidence(1) possibly_damaging(0.85) TCGA-E5-A4TZ-01 6 32181995 32181995 C T NOTCH4 Missense_Mutation p.E687K 0.14 tolerated(0.32) benign(0.195) TCGA-E5-A4TZ-01 6 39869234 39869234 C T DAAM2 Missense_Mutation p.R990C 0.34 deleterious(0) probably_damaging(0.984) TCGA-E5-A4TZ-01 6 4126442 4126442 C T ECI2 Missense_Mutation p.D201N 0.17 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 6 41909349 41909349 G T CCND3 Silent p.P13P 0.80 TCGA-E5-A4TZ-01 6 42637866 42637866 G A UBR2 Silent p.T1306T 0.28 TCGA-E5-A4TZ-01 6 43111152 43111152 C T PTK7 Intron 0.28 TCGA-E5-A4TZ-01 6 43164002 43164002 G T CUL9 Missense_Mutation p.G862W 0.16 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 6 43543592 43543592 C G XPO5 Missense_Mutation p.D4H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-E5-A4TZ-01 6 52367893 52367893 C T TRAM2 3'UTR 0.27 TCGA-E5-A4TZ-01 6 54806086 54806086 C T FAM83B Nonsense_Mutation p.Q773* 0.15 TCGA-E5-A4TZ-01 6 75865414 75865414 C G COL12A1 Missense_Mutation p.G1136A 0.21 probably_damaging(0.996) TCGA-E5-A4TZ-01 6 8015807 8015807 C T BLOC1S5 3'UTR 0.42 TCGA-E5-A4TZ-01 6 82935193 82935193 C T IBTK Splice_Site p.X275_splice 0.85 TCGA-E5-A4TZ-01 6 89479548 89479548 G A RNGTT Missense_Mutation p.P462S 0.17 tolerated(0.37) benign(0.267) TCGA-E5-A4TZ-01 7 106508910 106508910 G C PIK3CG Missense_Mutation p.E302Q 0.17 deleterious(0.02) probably_damaging(0.93) TCGA-E5-A4TZ-01 7 106509310 106509310 G A PIK3CG Missense_Mutation p.C435Y 0.17 tolerated(0.31) benign(0.203) TCGA-E5-A4TZ-01 7 117431628 117431628 T C CTTNBP2 Missense_Mutation p.N541S 0.13 tolerated(0.05) probably_damaging(0.998) TCGA-E5-A4TZ-01 7 121019054 121019054 C T FAM3C Missense_Mutation p.V10M 0.29 tolerated(0.1) benign(0.055) TCGA-E5-A4TZ-01 7 12271628 12271628 G A TMEM106B 3'UTR 0.26 TCGA-E5-A4TZ-01 7 129125554 129125554 G A STRIP2 Missense_Mutation p.V797I 0.42 deleterious(0.02) probably_damaging(0.969) TCGA-E5-A4TZ-01 7 129962490 129962490 G A CPA4 Missense_Mutation p.E414K 0.08 tolerated(0.17) benign(0.02) TCGA-E5-A4TZ-01 7 131866295 131866295 C T PLXNA4 Missense_Mutation p.E1113K 0.45 tolerated(0.08) benign(0.101) TCGA-E5-A4TZ-01 7 135635365 135635365 C T MTPN Silent p.V84V 0.10 TCGA-E5-A4TZ-01 7 142131662 142131662 G C TRBV5-6 Missense_Mutation p.I31M 0.50 deleterious(0.02) probably_damaging(0.943) TCGA-E5-A4TZ-01 7 148851196 148851196 C T ZNF398 Missense_Mutation p.R62W 0.84 deleterious(0.01) probably_damaging(0.969) TCGA-E5-A4TZ-01 7 149488999 149488999 G C SSPO RNA 0.88 TCGA-E5-A4TZ-01 7 150654455 150654455 G A KCNH2 Missense_Mutation p.S351L 0.16 tolerated(0.26) benign(0.006) TCGA-E5-A4TZ-01 7 151962165 151962165 G T KMT2C Missense_Mutation p.A381E 0.08 probably_damaging(0.999) TCGA-E5-A4TZ-01 7 15427101 15427101 G A AGMO Missense_Mutation p.S296F 0.25 tolerated(0.08) benign(0.365) TCGA-E5-A4TZ-01 7 157000469 157000469 G A UBE3C Missense_Mutation p.R550Q 0.19 deleterious(0.02) probably_damaging(0.96) TCGA-E5-A4TZ-01 7 20784959 20784959 G C ABCB5 Missense_Mutation p.E1109D 0.17 tolerated(0.33) benign(0.307) TCGA-E5-A4TZ-01 7 21904152 21904152 G C DNAH11 Splice_Site p.X3799_splice 0.06 TCGA-E5-A4TZ-01 7 27185431 27185431 C T HOXA6 Missense_Mutation p.R183H 0.09 deleterious(0) probably_damaging(0.991) TCGA-E5-A4TZ-01 7 27196079 27196079 C G HOXA7 Missense_Mutation p.C29S 0.22 tolerated(0.1) possibly_damaging(0.688) TCGA-E5-A4TZ-01 7 32909797 32909797 G A KBTBD2 Silent p.F344F 0.24 TCGA-E5-A4TZ-01 7 37916441 37916441 G C NME8 Missense_Mutation p.E276Q 0.24 tolerated(0.14) benign(0.133) TCGA-E5-A4TZ-01 7 38424443 38424443 C T AMPH Silent p.E688E 0.23 TCGA-E5-A4TZ-01 7 45144232 45144232 C T TBRG4 Missense_Mutation p.R271Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-E5-A4TZ-01 7 47454780 47454780 G C TNS3 Silent p.L166L 0.67 TCGA-E5-A4TZ-01 7 48353833 48353833 C T ABCA13 Missense_Mutation p.S3229L 0.12 benign(0.002) TCGA-E5-A4TZ-01 7 5355627 5355627 G C TNRC18 Silent p.L2274L 0.06 TCGA-E5-A4TZ-01 7 64166737 64166737 G C ZNF107 Missense_Mutation p.E19Q 0.29 tolerated(0.1) benign(0.024) TCGA-E5-A4TZ-01 7 65220853 65220853 G A SNORA22 3'Flank 0.12 TCGA-E5-A4TZ-01 7 71252775 71252775 C G CALN1 Silent p.R257R 0.08 TCGA-E5-A4TZ-01 7 72742409 72742409 G A FKBP6 5'UTR 0.44 TCGA-E5-A4TZ-01 7 74129183 74129183 C G GTF2I Missense_Mutation p.P257R 0.10 deleterious(0.01) possibly_damaging(0.564) TCGA-E5-A4TZ-01 7 74554806 74554806 A T GTF2IRD2B Missense_Mutation p.D307V 0.21 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-E5-A4TZ-01 7 86827331 86827331 G C TMEM243 Missense_Mutation p.Q54E 0.23 tolerated(0.99) benign(0.001) TCGA-E5-A4TZ-01 7 90894909 90894909 G T FZD1 Silent p.P238P 0.19 TCGA-E5-A4TZ-01 7 92734759 92734759 C T SAMD9 Missense_Mutation p.E218K 0.11 deleterious(0) possibly_damaging(0.904) TCGA-E5-A4TZ-01 7 97823399 97823399 G A LMTK2 Missense_Mutation p.E1208K 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-E5-A4TZ-01 7 97851035 97851035 G A TECPR1 Missense_Mutation p.P1032L 0.24 tolerated(0.22) benign(0.003) TCGA-E5-A4TZ-01 7 97867839 97867839 G A TECPR1 Silent p.N339N 0.44 TCGA-E5-A4TZ-01 7 99631749 99631750 AG - ZKSCAN1 Frame_Shift_Del p.R543Sfs*3 0.11 TCGA-E5-A4TZ-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.39 TCGA-E5-A4TZ-01 8 104898096 104898096 T C RIMS2 Silent p.S423S 0.48 TCGA-E5-A4TZ-01 8 119122470 119122470 C A EXT1 Silent p.L272L 0.26 TCGA-E5-A4TZ-01 8 120628514 120628514 T G ENPP2 Silent p.G256G 0.33 TCGA-E5-A4TZ-01 8 121383509 121383509 C G COL14A1 3'UTR 0.35 TCGA-E5-A4TZ-01 8 133948049 133948049 C T TG Missense_Mutation p.R1661C 0.07 deleterious(0.03) possibly_damaging(0.517) TCGA-E5-A4TZ-01 8 143695045 143695045 C T ARC Silent p.P196P 0.31 TCGA-E5-A4TZ-01 8 144996528 144996528 C G PLEC Missense_Mutation p.E2624D 0.27 probably_damaging(0.989) TCGA-E5-A4TZ-01 8 27319110 27319110 G - CHRNA2 3'UTR 0.39 TCGA-E5-A4TZ-01 8 42958922 42958922 G A POMK Silent p.L77L 0.44 TCGA-E5-A4TZ-01 8 43052998 43052998 C T HGSNAT Silent p.V543V 0.44 TCGA-E5-A4TZ-01 8 65494174 65494174 C G BHLHE22 Missense_Mutation p.S276W 0.17 deleterious(0) probably_damaging(0.999) TCGA-E5-A4TZ-01 8 68044192 68044192 G A CSPP1 Silent p.T563T 0.21 TCGA-E5-A4TZ-01 8 77618663 77618663 G C ZFHX4 Missense_Mutation p.R780S 0.07 benign(0.402) TCGA-E5-A4TZ-01 9 101817430 101817430 G A COL15A1 Silent p.L1026L 0.06 TCGA-E5-A4TZ-01 9 108125182 108125182 C G SLC44A1 Silent p.V327V 0.17 TCGA-E5-A4TZ-01 9 109689832 109689832 G A ZNF462 Silent p.Q1213Q 0.13 TCGA-E5-A4TZ-01 9 113191474 113191474 C A SVEP1 Missense_Mutation p.S1919I 0.38 possibly_damaging(0.878) TCGA-E5-A4TZ-01 9 113562700 113562700 G A MUSK Missense_Mutation p.S681N 0.60 tolerated(0.33) benign(0.003) TCGA-E5-A4TZ-01 9 116191590 116191590 C G C9orf43 Missense_Mutation p.S437C 0.14 deleterious(0) benign(0.42) TCGA-E5-A4TZ-01 9 123860839 123860839 G C CNTRL Missense_Mutation p.R266T 0.26 probably_damaging(0.999) TCGA-E5-A4TZ-01 9 127285047 127285047 C T NR6A1 Silent p.E460E 0.50 TCGA-E5-A4TZ-01 9 130420710 130420710 C G STXBP1 Missense_Mutation p.L76V 0.16 deleterious(0.01) possibly_damaging(0.475) TCGA-E5-A4TZ-01 9 130551808 130551808 G C CDK9 Missense_Mutation p.E369Q 0.08 tolerated_low_confidence(0.07) benign(0.006) TCGA-E5-A4TZ-01 9 132687349 132687349 G A FNBP1 Missense_Mutation p.R293C 0.07 deleterious(0) benign(0.266) TCGA-E5-A4TZ-01 9 134034770 134034770 G T NUP214 Nonsense_Mutation p.E813* 0.58 TCGA-E5-A4TZ-01 9 134321872 134321872 G C PRRC2B Missense_Mutation p.R233T 0.18 tolerated(0.28) benign(0.199) TCGA-E5-A4TZ-01 9 135102364 135102364 G A NTNG2 Missense_Mutation p.R329Q 0.52 tolerated(0.08) benign(0.007) TCGA-E5-A4TZ-01 9 137300143 137300143 C G RXRA Nonsense_Mutation p.S143* 0.31 TCGA-E5-A4TZ-01 9 139272848 139272848 G A SNAPC4 Missense_Mutation p.P1144L 0.31 tolerated(0.13) benign(0.002) TCGA-E5-A4TZ-01 9 140157650 140157650 C G NELFB Missense_Mutation p.I253M 0.13 deleterious(0) probably_damaging(0.997) TCGA-E5-A4TZ-01 9 140648655 140648655 C G EHMT1 Silent p.L427L 0.03 TCGA-E5-A4TZ-01 9 36246351 36246351 A T GNE Missense_Mutation p.V129D 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-E5-A4TZ-01 9 37515909 37515909 G C FBXO10 Missense_Mutation p.F896L 0.23 tolerated(0.23) benign(0.057) TCGA-E5-A4TZ-01 9 72064581 72064581 C G APBA1 Silent p.L700L 0.15 TCGA-E5-A4TZ-01 9 72897478 72897478 G A SMC5 Silent p.L320L 0.26 TCGA-E5-A4TZ-01 9 732472 732472 G C KANK1 Missense_Mutation p.E1034Q 0.15 tolerated(0.35) benign(0.021) TCGA-E5-A4TZ-01 9 79955335 79955335 G C VPS13A Missense_Mutation p.D2299H 0.11 tolerated(0.05) benign(0.049) TCGA-E5-A4TZ-01 9 88628646 88628646 G A NAA35 Missense_Mutation p.D468N 0.12 deleterious(0) probably_damaging(0.998) TCGA-E5-A4TZ-01 9 97873861 97873861 C G FANCC Missense_Mutation p.E405Q 0.05 deleterious(0) benign(0.397) TCGA-E5-A4TZ-01 9 97873900 97873900 C G FANCC Missense_Mutation p.E392Q 0.05 tolerated(0.05) probably_damaging(0.951) TCGA-E5-A4TZ-01 9 97876927 97876927 C T FANCC Missense_Mutation p.E380K 0.05 deleterious(0.03) possibly_damaging(0.905) TCGA-E5-A4TZ-01 9 98242303 98242303 C G PTCH1 Missense_Mutation p.E339Q 0.27 deleterious(0.01) possibly_damaging(0.677) TCGA-E5-A4TZ-01 9 98242761 98242761 C T PTCH1 Missense_Mutation p.E286K 0.29 tolerated(0.15) benign(0.01) TCGA-E5-A4TZ-01 9 99522664 99522664 T C ZNF510 Missense_Mutation p.T150A 0.56 tolerated(0.12) benign(0) TCGA-E5-A4TZ-01 X 10102470 10102470 A T WWC3 Splice_Site p.X867_splice 0.89 TCGA-E5-A4TZ-01 X 101972058 101972058 A C GPRASP2 Missense_Mutation p.K754T 0.84 tolerated(0.19) benign(0.008) TCGA-E5-A4TZ-01 X 106843619 106843619 G C FRMPD3 Missense_Mutation p.E817Q 0.23 deleterious(0) possibly_damaging(0.76) TCGA-E5-A4TZ-01 X 106845418 106845418 G A FRMPD3 Silent p.L1416L 0.08 TCGA-E5-A4TZ-01 X 111698851 111698851 C A ZCCHC16 Silent p.R299R 0.24 TCGA-E5-A4TZ-01 X 118223109 118223109 A G KIAA1210 Missense_Mutation p.M695T 0.51 tolerated(0.34) benign(0.001) TCGA-E5-A4TZ-01 X 144905318 144905318 A T SLITRK2 Missense_Mutation p.I459F 0.84 deleterious(0) probably_damaging(1) TCGA-E5-A4TZ-01 X 2407129 2407129 G C ZBED1 Missense_Mutation p.I544M 0.42 tolerated(0.08) benign(0.345) TCGA-E5-A4TZ-01 X 2658837 2658837 G C CD99 Missense_Mutation p.E184Q 0.13 tolerated(0.41) benign(0.403) TCGA-E5-A4TZ-01 X 40506716 40506716 C A CXorf38 Silent p.V19V 0.22 TCGA-E5-A4TZ-01 X 47464458 47464458 C T SYN1 Silent p.Q231Q 0.20 TCGA-E5-A4TZ-01 X 48546837 48546837 G A WAS Missense_Mutation p.R309H 0.44 deleterious(0) probably_damaging(0.98) TCGA-E5-A4TZ-01 X 63410227 63410227 C A AMER1 Missense_Mutation p.L980F 0.38 tolerated(0.08) possibly_damaging(0.747) TCGA-E5-A4TZ-01 X 99852500 99852500 G C TNMD Splice_Site p.X142_splice 0.52 TCGA-E5-A4U1-01 10 104172193 104172193 G T PSD Missense_Mutation p.L565M 0.46 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 10 104678762 104678762 C G CNNM2 Missense_Mutation p.I175M 0.04 tolerated(0.07) benign(0.074) TCGA-E5-A4U1-01 10 104679089 104679089 G C CNNM2 Silent p.P284P 0.33 TCGA-E5-A4U1-01 10 105198494 105198494 C T PDCD11 Silent p.I1318I 0.46 TCGA-E5-A4U1-01 10 112342324 112342324 C G SMC3 Missense_Mutation p.S243C 0.44 tolerated(0.1) probably_damaging(0.95) TCGA-E5-A4U1-01 10 115535606 115535606 G A PLEKHS1 Missense_Mutation p.E338K 0.04 deleterious(0.04) probably_damaging(0.96) TCGA-E5-A4U1-01 10 115804639 115804639 G A ADRB1 Missense_Mutation p.E250K 0.10 tolerated(0.06) possibly_damaging(0.689) TCGA-E5-A4U1-01 10 116061127 116061127 C A AFAP1L2 Nonsense_Mutation p.E510* 0.08 TCGA-E5-A4U1-01 10 116417887 116417887 C T ABLIM1 Missense_Mutation p.E25K 0.42 tolerated_low_confidence(0.36) benign(0.001) TCGA-E5-A4U1-01 10 120354301 120354301 G T PRLHR Silent p.L152L 0.43 TCGA-E5-A4U1-01 10 124339327 124339327 G A DMBT1 Missense_Mutation p.G305R 0.47 deleterious(0.01) probably_damaging(1) TCGA-E5-A4U1-01 10 13161005 13161005 G A OPTN Silent p.E248E 0.36 TCGA-E5-A4U1-01 10 134647015 134647015 C G TTC40 Missense_Mutation p.E2322Q 0.05 deleterious(0.02) possibly_damaging(0.776) TCGA-E5-A4U1-01 10 135352563 135352563 G C CYP2E1 3'UTR 0.21 TCGA-E5-A4U1-01 10 13653625 13653625 A G PRPF18 Missense_Mutation p.E174G 0.48 tolerated(0.28) benign(0.055) TCGA-E5-A4U1-01 10 23292274 23292274 G A ARMC3 Silent p.L554L 0.42 TCGA-E5-A4U1-01 10 25888018 25888018 T C GPR158 Missense_Mutation p.Y1155H 0.53 tolerated(0.54) benign(0.001) TCGA-E5-A4U1-01 10 26575295 26575295 C A GAD2 Missense_Mutation p.Q420K 0.14 tolerated(0.18) probably_damaging(0.931) TCGA-E5-A4U1-01 10 395353 395353 C G DIP2C Missense_Mutation p.K1009N 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-E5-A4U1-01 10 43015727 43015727 G A ZNF37BP RNA 0.26 TCGA-E5-A4U1-01 10 45652303 45652303 G A RP11-445N18.7 RNA 0.49 TCGA-E5-A4U1-01 10 60566350 60566350 G A BICC1 Missense_Mutation p.D730N 0.19 tolerated(0.06) probably_damaging(0.971) TCGA-E5-A4U1-01 10 70048777 70048777 C T PBLD Splice_Site p.X142_splice 0.47 TCGA-E5-A4U1-01 10 70775863 70775863 C G KIAA1279 Silent p.L519L 0.48 TCGA-E5-A4U1-01 10 74098043 74098043 C T DNAJB12 Silent p.L284L 0.46 TCGA-E5-A4U1-01 10 75069932 75069932 C G TTC18 Missense_Mutation p.E484Q 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-E5-A4U1-01 10 75542766 75542766 G C CHCHD1 Intron 0.50 TCGA-E5-A4U1-01 10 76854451 76854451 C G DUSP13 Missense_Mutation p.E244Q 0.39 tolerated(0.08) benign(0.195) TCGA-E5-A4U1-01 10 79781631 79781631 C T POLR3A Silent p.L345L 0.11 TCGA-E5-A4U1-01 10 8116018 8116018 G C GATA3 3'UTR 0.51 TCGA-E5-A4U1-01 10 81272751 81272751 G A EIF5AL1 Missense_Mutation p.E116K 0.23 deleterious(0.03) possibly_damaging(0.665) TCGA-E5-A4U1-01 10 98031128 98031128 G A BLNK Missense_Mutation p.P10S 0.43 deleterious(0.04) possibly_damaging(0.791) TCGA-E5-A4U1-01 11 108160394 108160394 G A ATM Silent p.K1434K 0.95 TCGA-E5-A4U1-01 11 114278279 114278279 C G RBM7 Missense_Mutation p.S184C 0.05 deleterious(0.01) probably_damaging(0.94) TCGA-E5-A4U1-01 11 117335849 117335849 C T DSCAML1 Missense_Mutation p.G1085D 0.74 deleterious(0.02) probably_damaging(0.993) TCGA-E5-A4U1-01 11 118428457 118428457 C G IFT46 Missense_Mutation p.R65T 0.82 deleterious_low_confidence(0.04) benign(0.017) TCGA-E5-A4U1-01 11 118765356 118765356 C G CXCR5 Missense_Mutation p.S368C 0.89 deleterious(0) possibly_damaging(0.496) TCGA-E5-A4U1-01 11 120811137 120811137 C G GRIK4 Missense_Mutation p.L520V 0.84 tolerated(0.05) probably_damaging(0.988) TCGA-E5-A4U1-01 11 12280083 12280083 G A MICAL2 Missense_Mutation p.E1071K 0.79 tolerated_low_confidence(0.26) benign(0.089) TCGA-E5-A4U1-01 11 122930347 122930347 C G HSPA8 Missense_Mutation p.E318D 0.82 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-E5-A4U1-01 11 123814011 123814011 G A OR6T1 Missense_Mutation p.R179C 0.51 tolerated(1) benign(0) TCGA-E5-A4U1-01 11 1271981 1271981 C T MUC5B Missense_Mutation p.T4624I 0.90 unknown(0) TCGA-E5-A4U1-01 11 130005479 130005479 G C APLP2 Missense_Mutation p.R569P 0.62 deleterious(0) possibly_damaging(0.863) TCGA-E5-A4U1-01 11 132184556 132184556 C G NTM Missense_Mutation p.S298C 0.53 tolerated(0.15) possibly_damaging(0.605) TCGA-E5-A4U1-01 11 30033396 30033396 C G KCNA4 Missense_Mutation p.R277T 0.48 deleterious(0.03) benign(0.104) TCGA-E5-A4U1-01 11 31669361 31669361 G C ELP4 Missense_Mutation p.E334Q 0.08 tolerated(0.09) benign(0.236) TCGA-E5-A4U1-01 11 34680094 34680094 C T EHF Missense_Mutation p.H230Y 0.86 deleterious(0) probably_damaging(0.996) TCGA-E5-A4U1-01 11 47196568 47196568 G C ARFGAP2 Missense_Mutation p.Q160E 0.03 tolerated(0.38) possibly_damaging(0.496) TCGA-E5-A4U1-01 11 55927735 55927735 C A OR8K5 Missense_Mutation p.R20L 0.43 tolerated_low_confidence(0.3) benign(0.001) TCGA-E5-A4U1-01 11 57583408 57583408 C G CTNND1 Missense_Mutation p.L944V 0.48 tolerated_low_confidence(0.36) benign(0.026) TCGA-E5-A4U1-01 11 60197253 60197253 C G MS4A5 Missense_Mutation p.Q36E 0.14 tolerated(0.35) benign(0.002) TCGA-E5-A4U1-01 11 60620887 60620887 G C PTGDR2 Missense_Mutation p.F103L 0.44 tolerated(0.52) benign(0.058) TCGA-E5-A4U1-01 11 61539167 61539167 C T MYRF Silent p.L312L 0.51 TCGA-E5-A4U1-01 11 61976200 61976200 C T SCGB2A1 5'UTR 0.45 TCGA-E5-A4U1-01 11 62415019 62415019 G C INTS5 Missense_Mutation p.L845V 0.46 tolerated(0.06) benign(0.276) TCGA-E5-A4U1-01 11 63676593 63676593 G T MARK2 Nonsense_Mutation p.E751* 0.49 TCGA-E5-A4U1-01 11 63719941 63719941 G A NAA40 Missense_Mutation p.R105Q 0.49 tolerated(0.21) benign(0.293) TCGA-E5-A4U1-01 11 63994361 63994361 C A NUDT22 Silent p.L79L 0.34 TCGA-E5-A4U1-01 11 63997249 63997249 C G NUDT22 Intron 0.32 TCGA-E5-A4U1-01 11 64847055 64847055 C G CDCA5 Missense_Mutation p.E150Q 0.37 tolerated(0.07) benign(0.249) TCGA-E5-A4U1-01 11 64978304 64978304 C T CAPN1 Silent p.D693D 0.05 TCGA-E5-A4U1-01 11 66109001 66109001 C T BRMS1 Intron 0.56 TCGA-E5-A4U1-01 11 6942835 6942835 G A OR2D3 Silent p.L201L 0.84 TCGA-E5-A4U1-01 11 71191848 71191848 C T NADSYN1 Silent p.L307L 0.85 TCGA-E5-A4U1-01 11 71948716 71948716 C T INPPL1 Missense_Mutation p.S1143L 0.54 tolerated(0.05) benign(0.307) TCGA-E5-A4U1-01 11 75139672 75139672 C G KLHL35 Splice_Site p.X294_splice 0.24 TCGA-E5-A4U1-01 11 75438672 75438672 A T MOGAT2 Missense_Mutation p.I155F 0.14 tolerated(0.13) benign(0.208) TCGA-E5-A4U1-01 11 77774998 77774998 T C THRSP Missense_Mutation p.V24A 0.04 tolerated(0.07) benign(0.207) TCGA-E5-A4U1-01 11 95546175 95546175 G A CEP57 Silent p.V94V 0.07 TCGA-E5-A4U1-01 11 96123862 96123862 G C JRKL Missense_Mutation p.D17H 0.86 deleterious(0.02) probably_damaging(0.982) TCGA-E5-A4U1-01 12 10280346 10280346 C G CLEC7A Missense_Mutation p.A68P 0.27 tolerated(0.08) possibly_damaging(0.828) TCGA-E5-A4U1-01 12 10958929 10958929 G C TAS2R8 Silent p.L217L 0.64 TCGA-E5-A4U1-01 12 109629436 109629436 G C ACACB Missense_Mutation p.L721F 0.28 deleterious(0) benign(0.443) TCGA-E5-A4U1-01 12 110353227 110353227 A C TCHP Missense_Mutation p.Q447P 0.26 deleterious(0) possibly_damaging(0.723) TCGA-E5-A4U1-01 12 110600732 110600732 C G IFT81 Missense_Mutation p.I350M 0.58 deleterious(0) probably_damaging(0.997) TCGA-E5-A4U1-01 12 110777366 110777366 T - ATP2A2 Frame_Shift_Del p.P535Lfs*2 0.38 TCGA-E5-A4U1-01 12 110782744 110782744 G A ATP2A2 Missense_Mutation p.D859N 0.55 tolerated(0.13) benign(0.063) TCGA-E5-A4U1-01 12 111885584 111885584 G A SH2B3 Missense_Mutation p.C454Y 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-E5-A4U1-01 12 113355508 113355508 G C OAS1 Intron 0.05 TCGA-E5-A4U1-01 12 119583487 119583487 C G SRRM4 Nonsense_Mutation p.S358* 0.33 TCGA-E5-A4U1-01 12 123068856 123068856 A T KNTC1 Missense_Mutation p.T1099S 0.47 deleterious(0.02) benign(0.005) TCGA-E5-A4U1-01 12 123265785 123265785 G C CCDC62 Missense_Mutation p.E102Q 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-E5-A4U1-01 12 123984052 123984052 C A RILPL1 Missense_Mutation p.K164N 0.15 tolerated(0.17) probably_damaging(0.984) TCGA-E5-A4U1-01 12 123984075 123984075 C G RILPL1 Missense_Mutation p.E157Q 0.13 tolerated(0.05) probably_damaging(0.998) TCGA-E5-A4U1-01 12 125271987 125271987 C A SCARB1 Nonsense_Mutation p.E407* 0.68 TCGA-E5-A4U1-01 12 131593338 131593338 G C GPR133 Missense_Mutation p.E653Q 0.05 deleterious(0) possibly_damaging(0.831) TCGA-E5-A4U1-01 12 132379588 132379588 C G ULK1 Missense_Mutation p.F14L 0.20 deleterious(0.01) benign(0.001) TCGA-E5-A4U1-01 12 16189258 16189258 G A DERA Silent p.L281L 0.19 TCGA-E5-A4U1-01 12 21471747 21471747 T - SLCO1A2 Frame_Shift_Del p.V58Lfs*15 0.30 TCGA-E5-A4U1-01 12 32135112 32135112 C T KIAA1551 Missense_Mutation p.S408L 0.05 tolerated(0.28) benign(0.081) TCGA-E5-A4U1-01 12 32480823 32480823 G A BICD1 Silent p.E478E 0.38 TCGA-E5-A4U1-01 12 40728840 40728840 G C LRRK2 Silent p.R1943R 0.37 TCGA-E5-A4U1-01 12 48104439 48104439 G A ENDOU 3'UTR 0.40 TCGA-E5-A4U1-01 12 49425902 49425902 G A KMT2D Nonsense_Mutation p.Q4196* 0.25 TCGA-E5-A4U1-01 12 52778880 52778880 C A KRT84 Missense_Mutation p.D164Y 0.52 deleterious(0) probably_damaging(0.964) TCGA-E5-A4U1-01 12 53468949 53468949 G A SPRYD3 Nonsense_Mutation p.Q101* 0.63 TCGA-E5-A4U1-01 12 53676066 53676066 C G ESPL1 Missense_Mutation p.L880V 0.30 deleterious(0.01) benign(0.314) TCGA-E5-A4U1-01 12 57007800 57007800 G A BAZ2A Nonsense_Mutation p.Q287* 0.56 TCGA-E5-A4U1-01 12 57007814 57007814 G A BAZ2A Missense_Mutation p.S282L 0.58 deleterious(0.02) probably_damaging(0.989) TCGA-E5-A4U1-01 12 57407417 57407417 G C TAC3 Missense_Mutation p.F51L 0.26 tolerated(0.22) benign(0.041) TCGA-E5-A4U1-01 12 57573702 57573702 G C LRP1 Missense_Mutation p.E1702Q 0.24 benign(0.193) TCGA-E5-A4U1-01 12 57604261 57604261 C G LRP1 Missense_Mutation p.S4251C 0.60 possibly_damaging(0.45) TCGA-E5-A4U1-01 12 6161877 6161877 G C VWF Missense_Mutation p.S673C 0.63 deleterious(0) probably_damaging(0.997) TCGA-E5-A4U1-01 12 7046397 7046397 G C ATN1 Missense_Mutation p.G656A 0.41 possibly_damaging(0.856) TCGA-E5-A4U1-01 12 7528192 7528192 C T CD163L1 Splice_Site p.X896_splice 0.64 TCGA-E5-A4U1-01 12 76453941 76453941 G C NAP1L1 Missense_Mutation p.L109V 0.19 deleterious(0.04) possibly_damaging(0.716) TCGA-E5-A4U1-01 12 78592390 78592390 A G NAV3 Missense_Mutation p.Y2129C 0.59 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 12 81503365 81503365 G A ACSS3 Missense_Mutation p.C113Y 0.56 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 12 8212240 8212240 G A C3AR1 Missense_Mutation p.S181L 0.28 tolerated(0.42) benign(0.438) TCGA-E5-A4U1-01 12 82147793 82147793 G A PPFIA2 Nonsense_Mutation p.R70* 0.31 TCGA-E5-A4U1-01 13 110408541 110408541 C G IRS2 3'UTR 0.90 TCGA-E5-A4U1-01 13 23912678 23912678 C G SACS Silent p.S1779S 0.53 TCGA-E5-A4U1-01 13 25433165 25433165 G A RNF17 Missense_Mutation p.E1213K 0.48 tolerated(0.06) probably_damaging(0.973) TCGA-E5-A4U1-01 13 42877892 42877892 C T AKAP11 Silent p.S1670S 0.58 TCGA-E5-A4U1-01 13 46287777 46287777 C G SPERT Missense_Mutation p.S206W 0.59 deleterious(0.01) possibly_damaging(0.85) TCGA-E5-A4U1-01 13 53422340 53422340 C T PCDH8 Missense_Mutation p.E78K 0.58 deleterious(0.03) benign(0.111) TCGA-E5-A4U1-01 13 61987749 61987749 C T PCDH20 Silent p.A161A 0.68 TCGA-E5-A4U1-01 13 67800923 67800923 A T PCDH9 Silent p.P550P 0.18 TCGA-E5-A4U1-01 13 75873564 75873564 G A TBC1D4 Silent p.L1020L 0.37 TCGA-E5-A4U1-01 13 78492426 78492426 C G EDNRB Missense_Mutation p.E185Q 0.25 tolerated(0.06) benign(0.059) TCGA-E5-A4U1-01 13 95092235 95092235 G C DCT Missense_Mutation p.L526V 0.22 tolerated(0.28) benign(0.175) TCGA-E5-A4U1-01 13 96506611 96506611 C T UGGT2 Missense_Mutation p.G1376E 0.07 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 13 99567688 99567688 C T DOCK9 Missense_Mutation p.D263N 0.59 deleterious(0) possibly_damaging(0.899) TCGA-E5-A4U1-01 14 105207471 105207471 C G ADSSL1 Missense_Mutation p.I271M 0.89 deleterious(0) possibly_damaging(0.707) TCGA-E5-A4U1-01 14 21553959 21553959 G C ARHGEF40 Missense_Mutation p.E1358Q 0.08 deleterious(0.01) benign(0.178) TCGA-E5-A4U1-01 14 21945011 21945011 G A RAB2B Silent p.F7F 0.88 TCGA-E5-A4U1-01 14 23893272 23893272 C T MYH7 Missense_Mutation p.M922I 0.85 tolerated(0.11) benign(0.002) TCGA-E5-A4U1-01 14 23893277 23893277 C T MYH7 Missense_Mutation p.E921K 0.85 deleterious(0) probably_damaging(0.979) TCGA-E5-A4U1-01 14 24707760 24707760 G A GMPR2 Intron 0.79 TCGA-E5-A4U1-01 14 24707973 24707973 G C GMPR2 Missense_Mutation p.E364Q 0.94 tolerated_low_confidence(0.49) benign(0.002) TCGA-E5-A4U1-01 14 30135405 30135405 G C PRKD1 Missense_Mutation p.T138S 0.86 tolerated(0.27) benign(0.196) TCGA-E5-A4U1-01 14 34985644 34985644 C G EAPP Missense_Mutation p.E244Q 0.08 tolerated(0.3) benign(0.04) TCGA-E5-A4U1-01 14 35074893 35074893 C G SNX6 Missense_Mutation p.D113H 0.71 deleterious(0) possibly_damaging(0.9) TCGA-E5-A4U1-01 14 35230989 35230989 C G BAZ1A Missense_Mutation p.R1406T 0.14 deleterious_low_confidence(0.03) benign(0.143) TCGA-E5-A4U1-01 14 35592752 35592752 G A KIAA0391 Missense_Mutation p.E101K 0.79 tolerated(1) benign(0.001) TCGA-E5-A4U1-01 14 36244214 36244214 C G RALGAPA1 Missense_Mutation p.E89Q 0.81 deleterious(0.01) probably_damaging(0.997) TCGA-E5-A4U1-01 14 50734496 50734496 C T L2HGDH Missense_Mutation p.D347N 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-E5-A4U1-01 14 51134696 51134696 G A SAV1 5'UTR 0.11 TCGA-E5-A4U1-01 14 52526909 52526909 C T NID2 Missense_Mutation p.D234N 0.80 tolerated(0.31) possibly_damaging(0.836) TCGA-E5-A4U1-01 14 52985902 52985902 T C TXNDC16 Missense_Mutation p.I168V 0.10 tolerated(0.19) benign(0.011) TCGA-E5-A4U1-01 14 60581467 60581467 A T PCNXL4 Missense_Mutation p.I13F 0.80 deleterious(0) possibly_damaging(0.824) TCGA-E5-A4U1-01 14 65199580 65199580 G A PLEKHG3 Missense_Mutation p.E380K 0.88 deleterious(0.01) benign(0.193) TCGA-E5-A4U1-01 14 65569095 65569095 G A MAX 5'UTR 0.90 TCGA-E5-A4U1-01 14 68118073 68118073 C T VTI1B 3'UTR 0.06 TCGA-E5-A4U1-01 14 70237198 70237198 C T SRSF5 Silent p.F127F 0.80 TCGA-E5-A4U1-01 14 71267619 71267619 G A MAP3K9 Silent p.F195F 0.80 TCGA-E5-A4U1-01 14 71568755 71568755 G A PCNX Missense_Mutation p.E1880K 0.85 deleterious(0.02) probably_damaging(0.999) TCGA-E5-A4U1-01 14 73460022 73460022 G A ZFYVE1 Silent p.F344F 0.09 TCGA-E5-A4U1-01 14 73460037 73460037 G A ZFYVE1 Silent p.L339L 0.10 TCGA-E5-A4U1-01 14 74347981 74347981 G C PTGR2 Missense_Mutation p.E309Q 0.75 tolerated(0.15) benign(0.008) TCGA-E5-A4U1-01 14 91666179 91666179 C G C14orf159 Missense_Mutation p.I458M 0.08 deleterious(0.01) possibly_damaging(0.582) TCGA-E5-A4U1-01 15 22962450 22962450 G C CYFIP1 Missense_Mutation p.D724H 0.24 deleterious(0) probably_damaging(0.987) TCGA-E5-A4U1-01 15 33936642 33936642 G A RYR3 Missense_Mutation p.M1229I 0.29 possibly_damaging(0.784) TCGA-E5-A4U1-01 15 34163172 34163172 G C AVEN Silent p.L192L 0.26 TCGA-E5-A4U1-01 15 40268702 40268702 G A EIF2AK4 Missense_Mutation p.E636K 0.30 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 15 40920274 40920274 G C CASC5 Missense_Mutation p.D1821H 0.27 deleterious(0.01) possibly_damaging(0.793) TCGA-E5-A4U1-01 15 43656116 43656116 G A ZSCAN29 Missense_Mutation p.R563C 0.23 deleterious(0.02) benign(0.247) TCGA-E5-A4U1-01 15 49881979 49881979 C G FAM227B Missense_Mutation p.E111Q 0.62 tolerated(0.16) benign(0.079) TCGA-E5-A4U1-01 15 51749644 51749644 G A DMXL2 Missense_Mutation p.R2719C 0.54 tolerated(0.16) probably_damaging(0.969) TCGA-E5-A4U1-01 15 55972329 55972329 G A PRTG Missense_Mutation p.A299V 0.26 deleterious(0) possibly_damaging(0.474) TCGA-E5-A4U1-01 15 63097945 63097945 G C TLN2 Silent p.L2208L 0.30 TCGA-E5-A4U1-01 15 64454344 64454344 C G PPIB Missense_Mutation p.D49H 0.57 deleterious(0) probably_damaging(0.971) TCGA-E5-A4U1-01 15 66031159 66031159 G T DENND4A Missense_Mutation p.S229Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-E5-A4U1-01 15 75656927 75656927 C A MAN2C1 Nonsense_Mutation p.E168* 0.63 TCGA-E5-A4U1-01 15 76225119 76225119 C G FBXO22 Silent p.V296V 0.42 TCGA-E5-A4U1-01 15 86118385 86118385 C G AKAP13 Missense_Mutation p.S229C 0.04 deleterious(0) probably_damaging(0.939) TCGA-E5-A4U1-01 15 91543717 91543717 C G VPS33B Intron 0.33 TCGA-E5-A4U1-01 16 15222096 15222096 C T RP11-1186N24.5 RNA 0.48 TCGA-E5-A4U1-01 16 1842424 1842424 G C IGFALS Missense_Mutation p.P37A 0.50 tolerated_low_confidence(0.28) possibly_damaging(0.539) TCGA-E5-A4U1-01 16 19556150 19556150 C G CCP110 Nonsense_Mutation p.S839* 0.16 TCGA-E5-A4U1-01 16 2098649 2098649 G A TSC2 Silent p.L11L 0.33 TCGA-E5-A4U1-01 16 21288839 21288839 G C CRYM Missense_Mutation p.F79L 0.76 tolerated(0.27) benign(0.141) TCGA-E5-A4U1-01 16 2374431 2374431 G A ABCA3 Missense_Mutation p.H141Y 0.33 deleterious(0.04) benign(0.014) TCGA-E5-A4U1-01 16 24958917 24958917 C G ARHGAP17 Splice_Site p.X376_splice 0.06 TCGA-E5-A4U1-01 16 29706228 29706228 G C QPRT Missense_Mutation p.R86T 0.64 tolerated(0.24) benign(0.017) TCGA-E5-A4U1-01 16 29818771 29818771 C G MAZ Missense_Mutation p.S222W 0.05 deleterious(0.02) possibly_damaging(0.479) TCGA-E5-A4U1-01 16 30515559 30515559 G A ITGAL Missense_Mutation p.E737K 0.50 deleterious(0.04) benign(0.022) TCGA-E5-A4U1-01 16 30960832 30960832 C T ORAI3 Silent p.F74F 0.53 TCGA-E5-A4U1-01 16 31476000 31476000 G A ARMC5 Silent p.L552L 0.08 TCGA-E5-A4U1-01 16 4242602 4242602 C T SRL Missense_Mutation p.R325K 0.06 tolerated(0.1) benign(0.384) TCGA-E5-A4U1-01 16 48210950 48210950 G A ABCC11 Silent p.I1141I 0.31 TCGA-E5-A4U1-01 16 4933756 4933756 C T PPL Missense_Mutation p.D1634N 0.49 tolerated(0.05) possibly_damaging(0.495) TCGA-E5-A4U1-01 16 4933966 4933966 C G PPL Missense_Mutation p.E1564Q 0.45 deleterious(0.05) probably_damaging(0.92) TCGA-E5-A4U1-01 16 4934105 4934105 C G PPL Missense_Mutation p.Q1517H 0.60 deleterious(0.02) benign(0.077) TCGA-E5-A4U1-01 16 50348262 50348262 G C ADCY7 Missense_Mutation p.M972I 0.69 tolerated(0.34) probably_damaging(0.952) TCGA-E5-A4U1-01 16 55539267 55539267 C T MMP2 Silent p.F632F 0.54 TCGA-E5-A4U1-01 16 55855391 55855391 G C CES1 Missense_Mutation p.D194E 0.17 deleterious(0) probably_damaging(0.986) TCGA-E5-A4U1-01 16 56782202 56782202 C T NUP93 Nonsense_Mutation p.Q15* 0.55 TCGA-E5-A4U1-01 16 56872905 56872905 C T NUP93 Missense_Mutation p.S687F 0.34 deleterious(0) possibly_damaging(0.879) TCGA-E5-A4U1-01 16 57513521 57513521 C G DOK4 5'UTR 0.55 TCGA-E5-A4U1-01 16 67650659 67650659 C T CTCF Missense_Mutation p.H322Y 0.37 tolerated(0.56) benign(0.005) TCGA-E5-A4U1-01 16 70068170 70068170 G A MIR1972-2 3'Flank 0.09 TCGA-E5-A4U1-01 16 70719698 70719698 C G MTSS1L 5'UTR 0.46 TCGA-E5-A4U1-01 16 72992974 72992974 G C ZFHX3 Silent p.L357L 0.42 TCGA-E5-A4U1-01 16 75276443 75276443 C G BCAR1 Silent p.G232G 0.10 TCGA-E5-A4U1-01 16 75663316 75663316 G T KARS Silent p.A544A 0.23 TCGA-E5-A4U1-01 16 76461434 76461434 C A CNTNAP4 Missense_Mutation p.P134H 0.54 deleterious(0) probably_damaging(0.996) TCGA-E5-A4U1-01 16 81076969 81076969 G C ATMIN Missense_Mutation p.R289T 0.30 deleterious(0.01) possibly_damaging(0.694) TCGA-E5-A4U1-01 16 83378596 83378596 G A CDH13 Missense_Mutation p.E303K 0.30 deleterious(0.01) possibly_damaging(0.481) TCGA-E5-A4U1-01 16 84199470 84199470 G T DNAAF1 Missense_Mutation p.K315N 0.09 deleterious(0) benign(0.406) TCGA-E5-A4U1-01 16 85814059 85814059 C A EMC8 Silent p.T133T 0.48 TCGA-E5-A4U1-01 16 85946818 85946818 T C IRF8 Missense_Mutation p.W177R 0.38 deleterious(0.01) possibly_damaging(0.701) TCGA-E5-A4U1-01 16 88925045 88925045 C A TRAPPC2L Missense_Mutation p.R18S 0.50 tolerated(0.13) benign(0.171) TCGA-E5-A4U1-01 16 89774356 89774356 C G VPS9D1 Silent p.L603L 0.51 TCGA-E5-A4U1-01 17 17721227 17721227 G A SREBF1 Missense_Mutation p.S426F 0.95 tolerated(0.31) probably_damaging(0.993) TCGA-E5-A4U1-01 17 18907093 18907093 G C FAM83G Missense_Mutation p.Q88E 0.94 tolerated(1) benign(0.005) TCGA-E5-A4U1-01 17 1943809 1943809 C T DPH1 Missense_Mutation p.S311F 0.84 deleterious(0.01) possibly_damaging(0.774) TCGA-E5-A4U1-01 17 21201752 21201752 G T MAP2K3 Missense_Mutation p.R26L 0.30 deleterious(0.02) benign(0) TCGA-E5-A4U1-01 17 2221223 2221223 G A SRR Silent p.P76P 0.89 TCGA-E5-A4U1-01 17 27999017 27999017 C T SSH2 Missense_Mutation p.E222K 0.08 deleterious(0) possibly_damaging(0.682) TCGA-E5-A4U1-01 17 28296332 28296332 G A EFCAB5 Missense_Mutation p.M238I 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A4U1-01 17 28754559 28754559 C T CPD Missense_Mutation p.S667L 0.41 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 17 29559126 29559126 C A NF1 Nonsense_Mutation p.S1078* 0.54 TCGA-E5-A4U1-01 17 33321330 33321330 G A LIG3 Silent p.K497K 0.37 TCGA-E5-A4U1-01 17 34236398 34236398 G C AC015849.16 RNA 0.34 TCGA-E5-A4U1-01 17 34236422 34236422 G A AC015849.16 RNA 0.32 TCGA-E5-A4U1-01 17 34236434 34236434 G C AC015849.16 RNA 0.31 TCGA-E5-A4U1-01 17 34236484 34236484 G A AC015849.16 RNA 0.33 TCGA-E5-A4U1-01 17 34236532 34236532 G C AC015849.16 RNA 0.32 TCGA-E5-A4U1-01 17 38285590 38285590 C T MSL1 Missense_Mutation p.S99F 0.48 deleterious(0) probably_damaging(0.965) TCGA-E5-A4U1-01 17 40476996 40476996 C T STAT3 Silent p.L483L 0.04 TCGA-E5-A4U1-01 17 41610246 41610246 C T ETV4 Missense_Mutation p.E203K 0.35 tolerated(0.62) benign(0.43) TCGA-E5-A4U1-01 17 43220960 43220960 C T ACBD4 Silent p.C326C 0.62 TCGA-E5-A4U1-01 17 4995011 4995011 C G ZFP3 Nonsense_Mutation p.S71* 0.12 TCGA-E5-A4U1-01 17 56164499 56164499 C T DYNLL2 Silent p.D16D 0.24 TCGA-E5-A4U1-01 17 56620741 56620741 C A C17orf47 Missense_Mutation p.L269F 0.67 deleterious(0.02) benign(0) TCGA-E5-A4U1-01 17 56679793 56679793 C G TEX14 Missense_Mutation p.D505H 0.11 deleterious(0.01) probably_damaging(1) TCGA-E5-A4U1-01 17 61908478 61908478 C T PSMC5 Silent p.I254I 0.37 TCGA-E5-A4U1-01 17 62856867 62856867 C A LRRC37A3 Missense_Mutation p.D1133Y 0.55 deleterious(0) probably_damaging(0.969) TCGA-E5-A4U1-01 17 62856984 62856984 C G LRRC37A3 Missense_Mutation p.D1094H 0.60 deleterious(0) probably_damaging(0.984) TCGA-E5-A4U1-01 17 6722592 6722592 G A TEKT1 Silent p.L92L 0.82 TCGA-E5-A4U1-01 17 72233568 72233568 C G TTYH2 Missense_Mutation p.Q184E 0.30 tolerated(0.18) benign(0.247) TCGA-E5-A4U1-01 17 72862345 72862345 G A FDXR Missense_Mutation p.R182W 0.06 deleterious(0) probably_damaging(0.988) TCGA-E5-A4U1-01 17 7290706 7290706 G C TNK1 Missense_Mutation p.K474N 1.00 tolerated(0.49) benign(0.03) TCGA-E5-A4U1-01 17 73733438 73733438 G A ITGB4 Missense_Mutation p.E676K 0.23 deleterious(0.02) probably_damaging(0.978) TCGA-E5-A4U1-01 17 73974731 73974731 C G ACOX1 Missense_Mutation p.L51F 0.44 tolerated(0.7) benign(0.002) TCGA-E5-A4U1-01 17 7401049 7401049 G A POLR2A Silent p.L354L 0.84 TCGA-E5-A4U1-01 17 74015620 74015620 G A EVPL Nonsense_Mutation p.Q376* 0.37 TCGA-E5-A4U1-01 17 74161588 74161588 C G RNF157 Missense_Mutation p.E223Q 0.08 deleterious(0) probably_damaging(0.961) TCGA-E5-A4U1-01 17 74398695 74398695 G C UBE2O Missense_Mutation p.S225C 0.04 deleterious(0.01) probably_damaging(0.993) TCGA-E5-A4U1-01 17 74639591 74639591 T G ST6GALNAC1 Silent p.R44R 0.36 TCGA-E5-A4U1-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.75 deleterious(0) probably_damaging(0.947) TCGA-E5-A4U1-01 17 7578227 7578227 C T TP53 Missense_Mutation p.D208N 0.07 deleterious(0.03) probably_damaging(1) TCGA-E5-A4U1-01 17 77755958 77755958 G C CBX2 Intron 0.39 TCGA-E5-A4U1-01 17 78314024 78314024 C T RNF213 Nonsense_Mutation p.Q1953* 0.42 TCGA-E5-A4U1-01 17 78410133 78410133 C T ENDOV 3'UTR 0.57 TCGA-E5-A4U1-01 17 80992923 80992923 G C B3GNTL1 Missense_Mutation p.C110W 0.20 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 18 12686364 12686364 G C CEP76 Missense_Mutation p.A340G 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-E5-A4U1-01 18 14542973 14542973 C T POTEC Missense_Mutation p.R58K 0.26 deleterious_low_confidence(0) benign(0.067) TCGA-E5-A4U1-01 18 21033284 21033284 C T RIOK3 5'UTR 0.21 TCGA-E5-A4U1-01 18 28581610 28581610 T A DSC3 Missense_Mutation p.T737S 0.28 deleterious(0) probably_damaging(0.996) TCGA-E5-A4U1-01 18 32822819 32822819 G C ZNF397 Missense_Mutation p.E129Q 0.22 tolerated(0.34) probably_damaging(0.999) TCGA-E5-A4U1-01 18 5290905 5290905 C T ZBTB14 Silent p.A434A 0.58 TCGA-E5-A4U1-01 18 59157652 59157652 G C CDH20 5'UTR 0.79 TCGA-E5-A4U1-01 18 63525149 63525149 A G CDH7 Missense_Mutation p.N445D 0.30 tolerated(0.65) benign(0.326) TCGA-E5-A4U1-01 18 683378 683378 C T ENOSF1 Missense_Mutation p.M269I 0.26 deleterious(0) possibly_damaging(0.758) TCGA-E5-A4U1-01 19 10260222 10260222 G C DNMT1 Missense_Mutation p.F831L 0.05 deleterious(0.03) possibly_damaging(0.767) TCGA-E5-A4U1-01 19 1051274 1051274 G A ABCA7 Silent p.V935V 0.48 TCGA-E5-A4U1-01 19 12060307 12060307 C G ZNF700 Missense_Mutation p.Q490E 0.64 tolerated(0.07) benign(0.149) TCGA-E5-A4U1-01 19 13227203 13227203 G C TRMT1 Missense_Mutation p.S4W 0.55 tolerated_low_confidence(0.06) benign(0.157) TCGA-E5-A4U1-01 19 14142711 14142711 C T IL27RA Silent p.F9F 0.32 TCGA-E5-A4U1-01 19 1434778 1434778 C G DAZAP1 Nonsense_Mutation p.S364* 0.60 TCGA-E5-A4U1-01 19 1434829 1434829 C T DAZAP1 Missense_Mutation p.S381L 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-E5-A4U1-01 19 14939056 14939056 G C OR7A5 5'UTR 0.36 TCGA-E5-A4U1-01 19 16551699 16551699 C T EPS15L1 Missense_Mutation p.E63K 0.02 deleterious(0) possibly_damaging(0.465) TCGA-E5-A4U1-01 19 16793300 16793300 G C TMEM38A Missense_Mutation p.E179Q 0.34 deleterious(0.03) possibly_damaging(0.525) TCGA-E5-A4U1-01 19 17038868 17038868 G A CPAMD8 Silent p.V1154V 0.57 TCGA-E5-A4U1-01 19 17186250 17186250 C T HAUS8 5'UTR 0.35 TCGA-E5-A4U1-01 19 1796807 1796807 G A ATP8B3 Silent p.L552L 0.38 TCGA-E5-A4U1-01 19 19822462 19822462 G C ZNF14 Missense_Mutation p.S543C 0.65 tolerated(0.17) possibly_damaging(0.749) TCGA-E5-A4U1-01 19 20806848 20806848 C G ZNF626 3'UTR 0.27 TCGA-E5-A4U1-01 19 21909601 21909601 T C ZNF100 Missense_Mutation p.I505V 0.52 tolerated(0.29) benign(0.011) TCGA-E5-A4U1-01 19 21990740 21990740 T A ZNF43 Missense_Mutation p.H700L 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-E5-A4U1-01 19 2252961 2252961 C G JSRP1 Missense_Mutation p.E160Q 0.50 tolerated(0.27) probably_damaging(0.919) TCGA-E5-A4U1-01 19 3061215 3061215 G C AES Missense_Mutation p.S90W 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E5-A4U1-01 19 36606495 36606495 G A TBCB Silent p.V11V 0.58 TCGA-E5-A4U1-01 19 37854460 37854460 T C HKR1 Missense_Mutation p.F588S 0.51 deleterious(0.01) probably_damaging(0.987) TCGA-E5-A4U1-01 19 3977937 3977937 G C EEF2 Missense_Mutation p.I649M 0.37 deleterious(0) probably_damaging(0.993) TCGA-E5-A4U1-01 19 40364331 40364331 C T FCGBP Missense_Mutation p.E4771K 0.45 probably_damaging(0.999) TCGA-E5-A4U1-01 19 40383953 40383953 C T FCGBP Silent p.A3219A 0.20 TCGA-E5-A4U1-01 19 41932286 41932286 C G B3GNT8 Missense_Mutation p.G133A 0.38 tolerated_low_confidence(0.79) benign(0) TCGA-E5-A4U1-01 19 42474410 42474410 C G ATP1A3 Missense_Mutation p.K836N 0.41 tolerated(0.27) possibly_damaging(0.688) TCGA-E5-A4U1-01 19 4409114 4409114 C T CHAF1A Silent p.I106I 0.35 TCGA-E5-A4U1-01 19 44271757 44271757 C A KCNN4 Nonsense_Mutation p.E408* 0.13 TCGA-E5-A4U1-01 19 44271761 44271761 C T KCNN4 Silent p.L406L 0.14 TCGA-E5-A4U1-01 19 44612467 44612467 C T ZNF224 3'UTR 0.49 TCGA-E5-A4U1-01 19 47492821 47492821 G C ARHGAP35 Missense_Mutation p.E1309Q 0.54 tolerated(0.26) benign(0.422) TCGA-E5-A4U1-01 19 47492827 47492827 G T ARHGAP35 Missense_Mutation p.D1311Y 0.56 deleterious(0) probably_damaging(0.998) TCGA-E5-A4U1-01 19 48205572 48205572 C T GLTSCR1 Missense_Mutation p.S1528L 0.13 possibly_damaging(0.646) TCGA-E5-A4U1-01 19 48956281 48956281 G C GRWD1 Nonstop_Mutation p.*447Sext*57 0.21 TCGA-E5-A4U1-01 19 49379127 49379127 C T PPP1R15A Missense_Mutation p.S641L 0.53 tolerated(0.44) unknown(0) TCGA-E5-A4U1-01 19 50086859 50086859 G C PRRG2 Missense_Mutation p.R49T 0.59 tolerated(0.06) probably_damaging(0.997) TCGA-E5-A4U1-01 19 50154724 50154724 G A SCAF1 Missense_Mutation p.E360K 0.69 unknown(0) TCGA-E5-A4U1-01 19 51483506 51483506 C T KLK7 Silent p.T153T 0.38 TCGA-E5-A4U1-01 19 52468933 52468933 C T ZNF350 Missense_Mutation p.G258E 0.24 deleterious(0.03) probably_damaging(1) TCGA-E5-A4U1-01 19 52469258 52469258 C T ZNF350 Missense_Mutation p.E150K 0.60 tolerated(0.18) possibly_damaging(0.494) TCGA-E5-A4U1-01 19 53472582 53472582 G A ZNF702P RNA 0.40 TCGA-E5-A4U1-01 19 54081027 54081027 C T ZNF331 Missense_Mutation p.H405Y 0.55 deleterious(0) probably_damaging(0.99) TCGA-E5-A4U1-01 19 54720976 54720976 G C LILRB3 Missense_Mutation p.L629V 0.28 deleterious(0.04) probably_damaging(0.99) TCGA-E5-A4U1-01 19 54721190 54721190 C T LILRB3 Missense_Mutation p.E584K 0.11 tolerated(0.06) benign(0.025) TCGA-E5-A4U1-01 19 54822982 54822982 G C LILRA5 Missense_Mutation p.F138L 0.51 tolerated(0.74) benign(0.003) TCGA-E5-A4U1-01 19 54867579 54867579 C T LAIR1 Missense_Mutation p.R234K 0.32 tolerated(0.27) possibly_damaging(0.745) TCGA-E5-A4U1-01 19 55106754 55106754 C T LILRA1 Missense_Mutation p.S183F 0.57 deleterious(0.02) benign(0.138) TCGA-E5-A4U1-01 19 55918225 55918225 C T UBE2S Missense_Mutation p.E37K 0.59 deleterious(0.01) probably_damaging(0.943) TCGA-E5-A4U1-01 19 58265746 58265746 G A ZNF776 Silent p.K416K 0.04 TCGA-E5-A4U1-01 19 59074422 59074422 C A MZF1 Nonsense_Mutation p.E408* 0.72 TCGA-E5-A4U1-01 19 630136 630136 C T POLRMT Missense_Mutation p.E76K 0.49 tolerated(0.09) possibly_damaging(0.606) TCGA-E5-A4U1-01 19 8367180 8367180 C A CD320 3'UTR 0.33 TCGA-E5-A4U1-01 19 9067536 9067536 G C MUC16 Missense_Mutation p.S6637C 0.44 unknown(0) TCGA-E5-A4U1-01 19 9070618 9070618 G T MUC16 Silent p.R5610R 0.07 TCGA-E5-A4U1-01 1 110211953 110211953 C T GSTM2 Silent p.S73S 0.54 TCGA-E5-A4U1-01 1 110282104 110282104 C T GSTM3 Missense_Mutation p.D46N 0.03 deleterious(0.04) benign(0.189) TCGA-E5-A4U1-01 1 112308560 112308560 C T DDX20 Missense_Mutation p.S505L 0.32 tolerated(0.1) benign(0.001) TCGA-E5-A4U1-01 1 114123165 114123165 C T MAGI3 Silent p.C145C 0.48 TCGA-E5-A4U1-01 1 114354874 114354874 C T RSBN1 Missense_Mutation p.G54E 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-E5-A4U1-01 1 114454915 114454915 C T DCLRE1B 3'UTR 0.64 TCGA-E5-A4U1-01 1 117618442 117618442 C A TTF2 Silent p.A412A 0.31 TCGA-E5-A4U1-01 1 144859897 144859897 G A PDE4DIP Nonsense_Mutation p.Q2063* 0.26 TCGA-E5-A4U1-01 1 149857744 149857744 G A HIST2H2BE 3'UTR 0.09 TCGA-E5-A4U1-01 1 152282692 152282692 G A FLG Missense_Mutation p.S1557L 0.33 possibly_damaging(0.637) TCGA-E5-A4U1-01 1 154192352 154192352 C G C1orf43 Missense_Mutation p.R43P 0.21 deleterious(0) possibly_damaging(0.632) TCGA-E5-A4U1-01 1 154228167 154228167 C G UBAP2L Missense_Mutation p.S698C 0.08 tolerated(0.05) unknown(0) TCGA-E5-A4U1-01 1 154228194 154228194 C G UBAP2L Nonsense_Mutation p.S707* 0.09 TCGA-E5-A4U1-01 1 154557092 154557092 G C ADAR 3'UTR 0.69 TCGA-E5-A4U1-01 1 155292726 155292726 C G RUSC1 Missense_Mutation p.R388G 0.64 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-E5-A4U1-01 1 155823429 155823429 G A GON4L Missense_Mutation p.S48F 0.04 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-E5-A4U1-01 1 156288659 156288659 C G CCT3 Missense_Mutation p.Q253H 0.08 deleterious(0) probably_damaging(0.985) TCGA-E5-A4U1-01 1 158912136 158912136 C G PYHIN1 Missense_Mutation p.L317V 0.68 deleterious(0.01) probably_damaging(0.992) TCGA-E5-A4U1-01 1 15986751 15986751 G A RSC1A1 Missense_Mutation p.E130K 0.35 tolerated(0.22) benign(0.101) TCGA-E5-A4U1-01 1 160121751 160121751 G A ATP1A4 5'UTR 0.19 TCGA-E5-A4U1-01 1 16051906 16051906 G C PLEKHM2 Missense_Mutation p.Q269H 0.50 tolerated_low_confidence(1) benign(0) TCGA-E5-A4U1-01 1 161160904 161160904 G C ADAMTS4 3'UTR 0.45 TCGA-E5-A4U1-01 1 161928572 161928572 G A ATF6 3'UTR 0.25 TCGA-E5-A4U1-01 1 16269565 16269565 G A ZBTB17 Missense_Mutation p.H608Y 0.57 deleterious(0) probably_damaging(0.968) TCGA-E5-A4U1-01 1 16534508 16534508 G C ARHGEF19 Missense_Mutation p.L209V 0.29 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-E5-A4U1-01 1 16534656 16534656 G A ARHGEF19 Silent p.F159F 0.58 TCGA-E5-A4U1-01 1 169828278 169828278 G C SCYL3 Missense_Mutation p.L406V 0.57 deleterious(0.04) benign(0.267) TCGA-E5-A4U1-01 1 171244580 171244580 C T FMO1 Silent p.I139I 0.22 TCGA-E5-A4U1-01 1 173446490 173446490 C T PRDX6 5'UTR 0.56 TCGA-E5-A4U1-01 1 173503793 173503793 G C SLC9C2 Missense_Mutation p.H602D 0.11 deleterious(0.01) benign(0.28) TCGA-E5-A4U1-01 1 175054584 175054584 G T TNN Missense_Mutation p.M426I 0.53 tolerated(0.61) benign(0.006) TCGA-E5-A4U1-01 1 175375545 175375545 C G TNR Missense_Mutation p.M102I 0.52 tolerated(0.12) benign(0) TCGA-E5-A4U1-01 1 182869222 182869222 C T SHCBP1L Missense_Mutation p.D620N 0.30 deleterious(0.03) possibly_damaging(0.798) TCGA-E5-A4U1-01 1 186076087 186076087 G A HMCN1 Silent p.V3614V 0.04 TCGA-E5-A4U1-01 1 186147874 186147874 G A HMCN1 Missense_Mutation p.E5424K 0.44 possibly_damaging(0.608) TCGA-E5-A4U1-01 1 198505825 198505825 C G ATP6V1G3 Intron 0.23 TCGA-E5-A4U1-01 1 200961509 200961509 C G KIF21B Silent p.L762L 0.53 TCGA-E5-A4U1-01 1 20107215 20107215 G A TMCO4 Nonsense_Mutation p.Q13* 0.14 TCGA-E5-A4U1-01 1 201981298 201981298 G C ELF3 Missense_Mutation p.R126P 0.67 tolerated(0.15) possibly_damaging(0.596) TCGA-E5-A4U1-01 1 201981489 201981489 G A ELF3 Missense_Mutation p.E135K 0.45 tolerated(0.08) probably_damaging(0.993) TCGA-E5-A4U1-01 1 202863829 202863829 C T KLHL12 Missense_Mutation p.S395N 0.45 tolerated(0.3) probably_damaging(0.999) TCGA-E5-A4U1-01 1 203452777 203452777 C G PRELP Silent p.L155L 0.03 TCGA-E5-A4U1-01 1 203452885 203452885 C G PRELP Missense_Mutation p.F191L 0.04 tolerated(0.2) probably_damaging(1) TCGA-E5-A4U1-01 1 207273241 207273241 G T C4BPB Silent p.L242L 0.40 TCGA-E5-A4U1-01 1 209800260 209800260 G A LAMB3 Missense_Mutation p.R517C 0.32 deleterious(0) probably_damaging(0.982) TCGA-E5-A4U1-01 1 21155725 21155725 C T EIF4G3 Missense_Mutation p.D1318N 0.33 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 1 222700314 222700314 G A HHIPL2 Missense_Mutation p.S601L 0.45 deleterious(0) possibly_damaging(0.743) TCGA-E5-A4U1-01 1 227149231 227149231 G C ADCK3 Missense_Mutation p.E49Q 0.52 tolerated_low_confidence(0.36) benign(0.021) TCGA-E5-A4U1-01 1 228288845 228288845 C A C1orf35 Missense_Mutation p.G260V 0.40 deleterious_low_confidence(0.04) benign(0.016) TCGA-E5-A4U1-01 1 228486995 228486995 G A OBSCN Missense_Mutation p.E4416K 0.06 benign(0.003) TCGA-E5-A4U1-01 1 228588850 228588850 G A TRIM11 Missense_Mutation p.R184C 0.24 deleterious(0) possibly_damaging(0.836) TCGA-E5-A4U1-01 1 228594194 228594194 G A TRIM11 Silent p.F23F 0.38 TCGA-E5-A4U1-01 1 228879189 228879189 G C RHOU Missense_Mutation p.G160A 0.05 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 1 231298823 231298823 G A TRIM67 Silent p.V36V 0.60 TCGA-E5-A4U1-01 1 233122163 233122163 G A PCNXL2 Missense_Mutation p.S1972L 0.19 deleterious(0) possibly_damaging(0.778) TCGA-E5-A4U1-01 1 235577754 235577754 G A TBCE Silent p.P64P 0.52 TCGA-E5-A4U1-01 1 237843838 237843838 G A RYR2 Missense_Mutation p.G2993E 0.46 possibly_damaging(0.883) TCGA-E5-A4U1-01 1 248487040 248487040 G A OR2M7 Silent p.F277F 0.46 TCGA-E5-A4U1-01 1 248512832 248512832 A T OR14C36 Silent p.S252S 0.49 TCGA-E5-A4U1-01 1 27220739 27220739 C T GPATCH3 Missense_Mutation p.E347K 0.37 deleterious(0.05) probably_damaging(0.926) TCGA-E5-A4U1-01 1 27220740 27220740 C T GPATCH3 Silent p.Q346Q 0.38 TCGA-E5-A4U1-01 1 28920610 28920610 C A RAB42 Nonsense_Mutation p.S100* 0.23 TCGA-E5-A4U1-01 1 35824751 35824751 C A ZMYM4 Nonsense_Mutation p.S104* 0.09 TCGA-E5-A4U1-01 1 36212422 36212422 C G CLSPN Missense_Mutation p.K933N 0.47 deleterious(0.03) benign(0.083) TCGA-E5-A4U1-01 1 39352093 39352093 C T RHBDL2 3'UTR 0.32 TCGA-E5-A4U1-01 1 39352144 39352144 C G RHBDL2 3'UTR 0.17 TCGA-E5-A4U1-01 1 40703421 40703421 C G RLF Nonsense_Mutation p.S1016* 0.66 TCGA-E5-A4U1-01 1 40703673 40703673 C T RLF Missense_Mutation p.S1100L 0.68 tolerated(0.3) benign(0.094) TCGA-E5-A4U1-01 1 41579108 41579108 T A SCMH1 Missense_Mutation p.T188S 0.63 deleterious(0) probably_damaging(0.997) TCGA-E5-A4U1-01 1 42654591 42654591 C G FOXJ3 Missense_Mutation p.E488Q 0.62 tolerated(0.06) benign(0.419) TCGA-E5-A4U1-01 1 46751045 46751045 A T LRRC41 Missense_Mutation p.L495H 0.43 deleterious(0) probably_damaging(0.938) TCGA-E5-A4U1-01 1 50666550 50666550 G C ELAVL4 Missense_Mutation p.M284I 0.04 tolerated(0.1) benign(0.122) TCGA-E5-A4U1-01 1 52824767 52824767 C T CC2D1B Missense_Mutation p.E397K 0.14 tolerated(0.21) probably_damaging(0.981) TCGA-E5-A4U1-01 1 55627909 55627909 C T USP24 Missense_Mutation p.G319E 0.17 deleterious(0) probably_damaging(0.989) TCGA-E5-A4U1-01 1 6184081 6184081 C T CHD5 Silent p.V1542V 0.51 TCGA-E5-A4U1-01 1 6184104 6184104 C T CHD5 Missense_Mutation p.E1535K 0.39 tolerated(0.14) benign(0.007) TCGA-E5-A4U1-01 1 6184141 6184141 C A CHD5 Silent p.G1522G 0.33 TCGA-E5-A4U1-01 1 6184142 6184142 C A CHD5 Missense_Mutation p.G1522V 0.33 deleterious(0) probably_damaging(0.946) TCGA-E5-A4U1-01 1 6185886 6185886 C T CHD5 Missense_Mutation p.E1371K 0.55 deleterious(0.01) benign(0.028) TCGA-E5-A4U1-01 1 67145429 67145429 G C SGIP1 Missense_Mutation p.G270R 0.32 tolerated_low_confidence(0.12) benign(0.331) TCGA-E5-A4U1-01 1 70489016 70489016 G A LRRC7 Missense_Mutation p.A547T 0.29 tolerated(0.28) benign(0.002) TCGA-E5-A4U1-01 1 76877755 76877755 G A ST6GALNAC3 Silent p.Q92Q 0.59 TCGA-E5-A4U1-01 1 7798069 7798069 C T CAMTA1 Missense_Mutation p.H1237Y 0.60 deleterious_low_confidence(0.01) benign(0.191) TCGA-E5-A4U1-01 1 91182553 91182553 G C BARHL2 Nonsense_Mutation p.S67* 0.56 TCGA-E5-A4U1-01 1 95290163 95290163 C G SLC44A3 Missense_Mutation p.L84V 0.21 deleterious(0.03) probably_damaging(0.99) TCGA-E5-A4U1-01 20 21143479 21143479 C T RP4-777D9.2 RNA 0.43 TCGA-E5-A4U1-01 20 2463950 2463950 C T ZNF343 Missense_Mutation p.E553K 0.43 deleterious(0.03) possibly_damaging(0.865) TCGA-E5-A4U1-01 20 30432977 30432977 G A FOXS1 Silent p.T123T 0.73 TCGA-E5-A4U1-01 20 31021332 31021332 C G ASXL1 Nonsense_Mutation p.S444* 0.30 TCGA-E5-A4U1-01 20 31619496 31619496 G A BPIFB6 Missense_Mutation p.G15S 0.10 tolerated(0.33) benign(0.004) TCGA-E5-A4U1-01 20 34782186 34782186 C T EPB41L1 Silent p.D451D 0.11 TCGA-E5-A4U1-01 20 36642019 36642019 C T TTI1 Missense_Mutation p.R67K 0.32 tolerated(0.56) benign(0.016) TCGA-E5-A4U1-01 20 39657687 39657687 C T TOP1 5'UTR 0.47 TCGA-E5-A4U1-01 20 43117934 43117934 C G TTPAL Missense_Mutation p.L261V 0.37 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 20 43118172 43118172 C G TTPAL Missense_Mutation p.S340C 0.28 tolerated_low_confidence(0.15) possibly_damaging(0.503) TCGA-E5-A4U1-01 20 44048152 44048152 C G PIGT Silent p.L201L 0.13 TCGA-E5-A4U1-01 20 51871412 51871412 C A TSHZ2 Missense_Mutation p.T472N 0.27 tolerated(0.45) benign(0.016) TCGA-E5-A4U1-01 20 60508098 60508098 G A CDH4 Silent p.T765T 0.29 TCGA-E5-A4U1-01 20 62699426 62699426 C T TCEA2 Missense_Mutation p.R90W 0.17 deleterious(0) benign(0.001) TCGA-E5-A4U1-01 20 62730084 62730084 G A OPRL1 Missense_Mutation p.V349M 0.30 tolerated(0.41) benign(0.029) TCGA-E5-A4U1-01 20 62738020 62738020 G C NPBWR2 Missense_Mutation p.I55M 0.26 deleterious(0.01) possibly_damaging(0.459) TCGA-E5-A4U1-01 21 15755505 15755505 C T HSPA13 5'UTR 0.63 TCGA-E5-A4U1-01 21 30365150 30365150 G C LTN1 Missense_Mutation p.Q39E 0.28 tolerated_low_confidence(0.62) benign(0) TCGA-E5-A4U1-01 21 38569944 38569944 G A TTC3 Missense_Mutation p.E1885K 0.61 deleterious(0) probably_damaging(0.945) TCGA-E5-A4U1-01 21 39212961 39212961 C G KCNJ6 Missense_Mutation p.M8I 0.64 tolerated_low_confidence(0.44) benign(0) TCGA-E5-A4U1-01 21 40571073 40571073 C T BRWD1 Missense_Mutation p.E1757K 0.26 deleterious_low_confidence(0) benign(0.08) TCGA-E5-A4U1-01 21 43413854 43413854 G A ZBTB21 Silent p.I117I 0.54 TCGA-E5-A4U1-01 21 47742640 47742640 G A C21orf58 Missense_Mutation p.R5W 0.55 deleterious_low_confidence(0) unknown(0) TCGA-E5-A4U1-01 22 18210208 18210208 G T BCL2L13 Nonsense_Mutation p.E456* 0.32 TCGA-E5-A4U1-01 22 19839434 19839434 G A C22orf29 Silent p.F117F 0.35 TCGA-E5-A4U1-01 22 21377687 21377687 C T P2RX6 Silent p.F254F 0.35 TCGA-E5-A4U1-01 22 21799914 21799914 G C HIC2 Missense_Mutation p.E244Q 0.58 tolerated(0.12) benign(0.403) TCGA-E5-A4U1-01 22 23165548 23165548 C G IGLV2-8 Missense_Mutation p.S40C 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-E5-A4U1-01 22 24087187 24087187 G C ZNF70 Missense_Mutation p.I47M 0.06 tolerated(0.18) probably_damaging(0.994) TCGA-E5-A4U1-01 22 25016298 25016298 G A GGT1 Missense_Mutation p.G129E 0.31 deleterious(0) probably_damaging(0.997) TCGA-E5-A4U1-01 22 29664274 29664274 G C EWSR1 5'Flank 0.65 TCGA-E5-A4U1-01 22 30886159 30886159 G T SEC14L4 Missense_Mutation p.P386T 0.23 deleterious(0.02) possibly_damaging(0.758) TCGA-E5-A4U1-01 22 35947630 35947630 G C RASD2 Missense_Mutation p.E118Q 0.21 tolerated(0.1) benign(0.304) TCGA-E5-A4U1-01 22 39918445 39918445 G A ATF4 Silent p.K298K 0.22 TCGA-E5-A4U1-01 22 39918557 39918557 G T ATF4 Missense_Mutation p.D336Y 0.14 deleterious(0.05) possibly_damaging(0.647) TCGA-E5-A4U1-01 22 41999386 41999386 C G DESI1 Splice_Site p.X97_splice 0.37 TCGA-E5-A4U1-01 22 43529018 43529018 G C MCAT 3'UTR 0.58 TCGA-E5-A4U1-01 22 44112642 44112642 A G EFCAB6 Intron 0.29 TCGA-E5-A4U1-01 22 48972292 48972292 G A FAM19A5 Intron 0.31 TCGA-E5-A4U1-01 22 50965591 50965591 C A TYMP Intron 0.44 TCGA-E5-A4U1-01 2 100209920 100209920 C T AFF3 Missense_Mutation p.A760T 0.10 tolerated(0.08) possibly_damaging(0.497) TCGA-E5-A4U1-01 2 105885990 105885990 G C TGFBRAP1 Silent p.L715L 0.45 TCGA-E5-A4U1-01 2 108487281 108487281 C T RGPD4 Missense_Mutation p.L941F 0.59 tolerated(0.58) benign(0.003) TCGA-E5-A4U1-01 2 109545682 109545682 C T EDAR Missense_Mutation p.D110N 0.50 deleterious(0.02) probably_damaging(0.993) TCGA-E5-A4U1-01 2 128467130 128467130 G A WDR33 Missense_Mutation p.P1167S 0.04 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-E5-A4U1-01 2 130931230 130931230 C T SMPD4 Splice_Site p.X82_splice 0.21 TCGA-E5-A4U1-01 2 132241715 132241715 C G MZT2A Missense_Mutation p.Q132H 0.72 deleterious(0) benign(0.039) TCGA-E5-A4U1-01 2 138000038 138000038 C G THSD7B Missense_Mutation p.S721C 0.09 deleterious(0) possibly_damaging(0.78) TCGA-E5-A4U1-01 2 141004700 141004700 C T LRP1B Missense_Mutation p.E4427K 0.63 benign(0.292) TCGA-E5-A4U1-01 2 1546277 1546277 T A TPO 3'UTR 0.26 TCGA-E5-A4U1-01 2 162821638 162821638 G A SLC4A10 Silent p.L1038L 0.31 TCGA-E5-A4U1-01 2 163302588 163302588 C T KCNH7 Silent p.L498L 0.58 TCGA-E5-A4U1-01 2 16742492 16742492 G T FAM49A Missense_Mutation p.F189L 0.55 deleterious(0) probably_damaging(0.954) TCGA-E5-A4U1-01 2 169313123 169313123 C G CERS6 Missense_Mutation p.F55L 0.32 deleterious(0.01) benign(0.2) TCGA-E5-A4U1-01 2 170460703 170460703 G A PPIG Missense_Mutation p.R23K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A4U1-01 2 171713567 171713567 G A GAD1 Missense_Mutation p.E485K 0.36 tolerated(0.06) possibly_damaging(0.539) TCGA-E5-A4U1-01 2 173337526 173337526 C G ITGA6 Intron 0.50 TCGA-E5-A4U1-01 2 17889926 17889926 C G SMC6 Missense_Mutation p.E609Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-E5-A4U1-01 2 179436318 179436318 C G TTN Missense_Mutation p.E24847D 0.71 TCGA-E5-A4U1-01 2 179445025 179445025 G C TTN Intron 0.26 TCGA-E5-A4U1-01 2 179659214 179659214 C G TTN Missense_Mutation p.R437T 0.04 TCGA-E5-A4U1-01 2 179659276 179659276 C T TTN Silent p.V416V 0.07 TCGA-E5-A4U1-01 2 186673357 186673357 G A FSIP2 Missense_Mutation p.D6531N 0.21 probably_damaging(0.999) TCGA-E5-A4U1-01 2 188211114 188211114 G A CALCRL Silent p.L395L 0.59 TCGA-E5-A4U1-01 2 191231453 191231453 G C INPP1 Missense_Mutation p.E100Q 0.30 tolerated(0.25) possibly_damaging(0.658) TCGA-E5-A4U1-01 2 196729194 196729194 G C DNAH7 Silent p.V2395V 0.33 TCGA-E5-A4U1-01 2 197889969 197889969 C A AC017035.2 3'Flank 0.06 TCGA-E5-A4U1-01 2 206988950 206988950 T C NDUFS1 Missense_Mutation p.T729A 0.67 tolerated(0.86) benign(0.001) TCGA-E5-A4U1-01 2 215882852 215882852 C A ABCA12 Missense_Mutation p.Q554H 0.57 tolerated(0.11) benign(0.007) TCGA-E5-A4U1-01 2 216279478 216279478 C T FN1 Intron 0.75 TCGA-E5-A4U1-01 2 216279564 216279564 C G FN1 Missense_Mutation p.R646T 0.60 deleterious(0.03) benign(0.348) TCGA-E5-A4U1-01 2 219127966 219127966 C A GPBAR1 Silent p.L173L 0.51 TCGA-E5-A4U1-01 2 219868984 219868984 C G CCDC108 Missense_Mutation p.D1749H 0.04 deleterious(0.03) benign(0.437) TCGA-E5-A4U1-01 2 220379725 220379725 G A ASIC4 Silent p.L220L 0.40 TCGA-E5-A4U1-01 2 220379882 220379882 G C ASIC4 Missense_Mutation p.D273H 0.36 deleterious(0.01) probably_damaging(0.916) TCGA-E5-A4U1-01 2 227661379 227661379 C G IRS1 Silent p.G692G 0.45 TCGA-E5-A4U1-01 2 227919411 227919411 C G COL4A4 Missense_Mutation p.R920T 0.09 unknown(0) TCGA-E5-A4U1-01 2 228163451 228163451 G C COL4A3 Missense_Mutation p.D1269H 0.43 unknown(0) TCGA-E5-A4U1-01 2 231076216 231076216 C T SP110 Silent p.E240E 0.41 TCGA-E5-A4U1-01 2 233321156 233321156 C T ALPI Silent p.L55L 0.45 TCGA-E5-A4U1-01 2 237075028 237075028 C T GBX2 Silent p.P192P 0.56 TCGA-E5-A4U1-01 2 242541376 242541376 C G THAP4 Missense_Mutation p.E517Q 0.38 tolerated(0.23) probably_damaging(0.979) TCGA-E5-A4U1-01 2 24260579 24260579 G C C2orf44 Missense_Mutation p.Q596E 0.64 tolerated(0.15) benign(0.013) TCGA-E5-A4U1-01 2 27552304 27552304 G A GTF3C2 Nonsense_Mutation p.Q607* 0.51 TCGA-E5-A4U1-01 2 27597298 27597298 G C SNX17 Missense_Mutation p.K203N 0.09 deleterious(0) probably_damaging(0.992) TCGA-E5-A4U1-01 2 27600471 27600471 G A ZNF513 Missense_Mutation p.R523W 0.33 tolerated_low_confidence(0.08) benign(0.025) TCGA-E5-A4U1-01 2 28081412 28081412 C T RBKS Missense_Mutation p.G39E 0.47 deleterious(0) probably_damaging(0.994) TCGA-E5-A4U1-01 2 31587027 31587027 C G XDH Missense_Mutation p.Q876H 0.30 tolerated(0.55) benign(0.001) TCGA-E5-A4U1-01 2 32626592 32626592 C T BIRC6 Missense_Mutation p.S440L 0.06 benign(0.001) TCGA-E5-A4U1-01 2 32832589 32832589 G T BIRC6 Missense_Mutation p.R4713L 0.58 possibly_damaging(0.89) TCGA-E5-A4U1-01 2 33468840 33468840 C G LTBP1 Nonsense_Mutation p.S663* 0.50 TCGA-E5-A4U1-01 2 37121047 37121047 C T STRN Missense_Mutation p.D309N 0.21 tolerated(0.09) benign(0.423) TCGA-E5-A4U1-01 2 37586728 37586728 C G QPCT Missense_Mutation p.I91M 0.06 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 2 47300852 47300852 G A TTC7A Silent p.L789L 0.50 TCGA-E5-A4U1-01 2 48809463 48809463 C T STON1-GTF2A1L Missense_Mutation p.S564F 0.27 tolerated(0.7) possibly_damaging(0.882) TCGA-E5-A4U1-01 2 55403043 55403043 C T CLHC1 Silent p.Q548Q 0.68 TCGA-E5-A4U1-01 2 61417469 61417469 C T USP34 Silent p.Q3270Q 0.27 TCGA-E5-A4U1-01 2 69002304 69002304 C T ARHGAP25 Intron 0.37 TCGA-E5-A4U1-01 2 74040782 74040782 C G C2orf78 Silent p.L92L 0.20 TCGA-E5-A4U1-01 2 79363927 79363927 C T REG1P RNA 0.27 TCGA-E5-A4U1-01 2 85770092 85770092 G C MAT2A Missense_Mutation p.K340N 0.25 tolerated(0.18) benign(0.208) TCGA-E5-A4U1-01 2 88828629 88828629 C T TEX37 Silent p.P60P 0.30 TCGA-E5-A4U1-01 2 97532106 97532106 G A SEMA4C Silent p.L58L 0.06 TCGA-E5-A4U1-01 3 111313056 111313056 C T ZBED2 5'UTR 0.08 TCGA-E5-A4U1-01 3 111705884 111705884 C G ABHD10 Missense_Mutation p.Q188E 0.59 tolerated(0.27) benign(0.098) TCGA-E5-A4U1-01 3 113595078 113595078 G A GRAMD1C Missense_Mutation p.A144T 0.04 deleterious(0) probably_damaging(0.998) TCGA-E5-A4U1-01 3 119134180 119134180 C G ARHGAP31 Missense_Mutation p.S1135C 0.53 tolerated(0.17) benign(0.02) TCGA-E5-A4U1-01 3 121215661 121215661 A G POLQ Missense_Mutation p.Y758H 0.64 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 3 122274520 122274520 C G PARP9 Missense_Mutation p.W201C 0.49 deleterious(0) probably_damaging(0.979) TCGA-E5-A4U1-01 3 122433111 122433111 C T PARP14 Nonsense_Mutation p.Q1279* 0.58 TCGA-E5-A4U1-01 3 12393148 12393149 - A PPARG Frame_Shift_Ins p.T20Nfs*14 0.31 TCGA-E5-A4U1-01 3 126382219 126382219 C G NUP210P1 RNA 0.59 TCGA-E5-A4U1-01 3 12858282 12858282 C G CAND2 Silent p.L617L 0.40 TCGA-E5-A4U1-01 3 128612446 128612446 T C ACAD9 Missense_Mutation p.L98S 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-E5-A4U1-01 3 132086582 132086582 G A ACPP Silent p.L391L 0.26 TCGA-E5-A4U1-01 3 133098718 133098718 C T TMEM108 Missense_Mutation p.H55Y 0.37 tolerated_low_confidence(0.36) benign(0.346) TCGA-E5-A4U1-01 3 137956400 137956400 C T ARMC8 Silent p.L240L 0.50 TCGA-E5-A4U1-01 3 138417757 138417757 C T PIK3CB Missense_Mutation p.V588I 0.26 tolerated(0.06) possibly_damaging(0.868) TCGA-E5-A4U1-01 3 14485245 14485245 G T SLC6A6 Nonsense_Mutation p.E35* 0.39 TCGA-E5-A4U1-01 3 146173116 146173116 C G PLSCR2 Missense_Mutation p.L150F 0.59 deleterious(0.02) probably_damaging(0.92) TCGA-E5-A4U1-01 3 147106495 147106495 G A ZIC4 3'UTR 0.70 TCGA-E5-A4U1-01 3 14814342 14814342 G A C3orf20 Missense_Mutation p.S892N 0.07 tolerated_low_confidence(0.19) benign(0.001) TCGA-E5-A4U1-01 3 15071874 15071874 G A NR2C2 Missense_Mutation p.S361N 0.18 tolerated(0.45) benign(0.001) TCGA-E5-A4U1-01 3 159713373 159713373 C T IL12A 3'UTR 0.35 TCGA-E5-A4U1-01 3 168864266 168864266 G C MECOM 5'Flank 0.59 TCGA-E5-A4U1-01 3 178968533 178968533 G C KCNMB3 Silent p.L86L 0.05 TCGA-E5-A4U1-01 3 180397136 180397136 C T CCDC39 Nonsense_Mutation p.W11* 0.33 TCGA-E5-A4U1-01 3 183560125 183560125 G C PARL Missense_Mutation p.L240V 0.04 deleterious(0) probably_damaging(0.973) TCGA-E5-A4U1-01 3 184074862 184074862 C A CLCN2 Missense_Mutation p.G335V 0.60 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 3 186793660 186793660 G C ST6GAL1 3'UTR 0.14 TCGA-E5-A4U1-01 3 196199275 196199275 C T RNF168 Silent p.S377S 0.28 TCGA-E5-A4U1-01 3 25470207 25470207 C T RARB 5'UTR 0.04 TCGA-E5-A4U1-01 3 33907982 33907982 C G PDCD6IP Missense_Mutation p.Q863E 0.45 tolerated(0.21) unknown(0) TCGA-E5-A4U1-01 3 36587849 36587849 C T STAC 3'UTR 0.50 TCGA-E5-A4U1-01 3 38768156 38768156 C A SCN10A Nonsense_Mutation p.E1010* 0.39 TCGA-E5-A4U1-01 3 39184950 39184950 C T CSRNP1 Missense_Mutation p.E456K 0.39 deleterious(0) probably_damaging(0.998) TCGA-E5-A4U1-01 3 42251402 42251402 G A TRAK1 Missense_Mutation p.E630K 0.04 deleterious(0.02) possibly_damaging(0.507) TCGA-E5-A4U1-01 3 45943267 45943267 G A CCR9 Silent p.V329V 0.42 TCGA-E5-A4U1-01 3 48310141 48310141 C T ZNF589 Silent p.I320I 0.51 TCGA-E5-A4U1-01 3 48623270 48623270 C G COL7A1 Missense_Mutation p.G1260A 0.05 unknown(0) TCGA-E5-A4U1-01 3 48623284 48623284 C T COL7A1 Silent p.Q1255Q 0.05 TCGA-E5-A4U1-01 3 49274119 49274119 G A CCDC36 Silent p.L65L 0.51 TCGA-E5-A4U1-01 3 49321496 49321496 C G USP4 Missense_Mutation p.V822L 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-E5-A4U1-01 3 49698174 49698174 G C BSN Missense_Mutation p.D2966H 0.52 unknown(0) TCGA-E5-A4U1-01 3 50655200 50655200 G C MAPKAPK3 Missense_Mutation p.Q68H 0.48 deleterious(0.01) benign(0.035) TCGA-E5-A4U1-01 3 51101878 51101878 G A DOCK3 Splice_Site p.X106_splice 0.05 TCGA-E5-A4U1-01 3 52823841 52823841 G A ITIH1 Nonsense_Mutation p.W764* 0.47 TCGA-E5-A4U1-01 3 53912421 53912421 G T ACTR8 Missense_Mutation p.S123Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-E5-A4U1-01 3 65416426 65416426 G C MAGI1 Missense_Mutation p.I498M 0.53 deleterious(0) probably_damaging(0.967) TCGA-E5-A4U1-01 3 87309001 87309001 G C POU1F1 3'UTR 0.57 TCGA-E5-A4U1-01 3 89391064 89391064 G T EPHA3 Missense_Mutation p.S377I 0.13 deleterious(0.01) possibly_damaging(0.481) TCGA-E5-A4U1-01 3 9798753 9798753 C T OGG1 Intron 0.04 TCGA-E5-A4U1-01 3 9876587 9876587 G C TTLL3 Missense_Mutation p.R783T 0.42 tolerated_low_confidence(0.16) benign(0.013) TCGA-E5-A4U1-01 4 103522086 103522086 C G NFKB1 Missense_Mutation p.Q558E 0.46 tolerated(0.98) benign(0.003) TCGA-E5-A4U1-01 4 104511087 104511087 C T TACR3 Missense_Mutation p.E384K 0.45 tolerated(0.65) possibly_damaging(0.805) TCGA-E5-A4U1-01 4 110765387 110765387 T C RRH 3'UTR 0.37 TCGA-E5-A4U1-01 4 113353310 113353310 C T ALPK1 Silent p.H869H 0.45 TCGA-E5-A4U1-01 4 113568079 113568079 G C LARP7 Missense_Mutation p.E181Q 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-E5-A4U1-01 4 118006608 118006608 C T TRAM1L1 5'UTR 0.56 TCGA-E5-A4U1-01 4 119158324 119158324 G A NDST3 Silent p.K689K 0.38 TCGA-E5-A4U1-01 4 119952333 119952333 C T SYNPO2 Silent p.T801T 0.04 TCGA-E5-A4U1-01 4 123132056 123132056 G C KIAA1109 Missense_Mutation p.E685Q 0.41 possibly_damaging(0.545) TCGA-E5-A4U1-01 4 126241768 126241768 C T FAT4 Missense_Mutation p.S1401L 0.05 probably_damaging(0.999) TCGA-E5-A4U1-01 4 128564709 128564709 G C INTU Missense_Mutation p.Q60H 0.47 tolerated(0.07) benign(0.105) TCGA-E5-A4U1-01 4 142155112 142155112 G T ZNF330 Missense_Mutation p.G311V 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E5-A4U1-01 4 147215121 147215121 C G SLC10A7 Missense_Mutation p.D228H 0.04 tolerated(0.07) benign(0.034) TCGA-E5-A4U1-01 4 151170830 151170830 C T DCLK2 Silent p.V706V 0.05 TCGA-E5-A4U1-01 4 153896268 153896268 G C FHDC1 Missense_Mutation p.E609Q 0.48 tolerated(0.23) benign(0.013) TCGA-E5-A4U1-01 4 155176718 155176718 C T DCHS2 Silent p.V1843V 0.21 TCGA-E5-A4U1-01 4 155507643 155507643 G C FGA Missense_Mutation p.S313C 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-E5-A4U1-01 4 159443118 159443118 G C RXFP1 5'UTR 0.48 TCGA-E5-A4U1-01 4 164246739 164246739 G A NPY1R Nonsense_Mutation p.Q291* 0.22 TCGA-E5-A4U1-01 4 1643153 1643153 G C FAM53A Missense_Mutation p.S355C 0.04 deleterious(0.02) possibly_damaging(0.847) TCGA-E5-A4U1-01 4 167675586 167675586 T C SPOCK3 Intron 0.37 TCGA-E5-A4U1-01 4 173730548 173730548 G C GALNTL6 Missense_Mutation p.R197P 0.38 tolerated(0.15) benign(0.016) TCGA-E5-A4U1-01 4 174238873 174238873 G T GALNT7 Missense_Mutation p.G566V 0.20 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 4 175896821 175896821 C T ADAM29 Missense_Mutation p.P49S 0.50 tolerated(0.14) benign(0.101) TCGA-E5-A4U1-01 4 175897229 175897229 C G ADAM29 Missense_Mutation p.Q185E 0.47 deleterious(0.03) benign(0.001) TCGA-E5-A4U1-01 4 177083305 177083305 C T WDR17 Missense_Mutation p.L968F 0.45 deleterious(0) probably_damaging(0.998) TCGA-E5-A4U1-01 4 1843116 1843116 G C LETM1 Silent p.R184R 0.25 TCGA-E5-A4U1-01 4 184426342 184426342 C T ING2 5'UTR 0.10 TCGA-E5-A4U1-01 4 185038146 185038146 C T ENPP6 Missense_Mutation p.D240N 0.30 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 4 185687901 185687901 G A ACSL1 Nonsense_Mutation p.Q380* 0.47 TCGA-E5-A4U1-01 4 187197540 187197540 C G F11 Missense_Mutation p.Q251E 0.45 tolerated(0.29) benign(0.007) TCGA-E5-A4U1-01 4 187455565 187455565 C T MTNR1A Missense_Mutation p.V111I 0.38 deleterious(0.04) possibly_damaging(0.603) TCGA-E5-A4U1-01 4 187542068 187542068 G C FAT1 Missense_Mutation p.P1891R 0.06 probably_damaging(1) TCGA-E5-A4U1-01 4 2906529 2906529 G A ADD1 Silent p.L400L 0.38 TCGA-E5-A4U1-01 4 3430382 3430382 C T RGS12 Missense_Mutation p.S1170F 0.51 deleterious(0) possibly_damaging(0.794) TCGA-E5-A4U1-01 4 38134765 38134765 C T TBC1D1 Nonsense_Mutation p.Q1065* 0.48 TCGA-E5-A4U1-01 4 38829392 38829392 C G TLR6 Missense_Mutation p.R568T 0.25 deleterious(0) possibly_damaging(0.694) TCGA-E5-A4U1-01 4 42466732 42466732 T C ATP8A1 Missense_Mutation p.K865R 0.47 deleterious(0) benign(0.108) TCGA-E5-A4U1-01 4 42558015 42558015 T C ATP8A1 Silent p.S461S 0.09 TCGA-E5-A4U1-01 4 47912912 47912912 C A NFXL1 Missense_Mutation p.G112V 0.50 tolerated(0.15) benign(0.068) TCGA-E5-A4U1-01 4 54326978 54326978 C G LNX1 3'UTR 0.38 TCGA-E5-A4U1-01 4 5624594 5624594 A T EVC2 Missense_Mutation p.L724Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 4 56325151 56325151 C G CLOCK Missense_Mutation p.E234Q 0.06 deleterious(0.02) benign(0.258) TCGA-E5-A4U1-01 4 57194504 57194504 C G KIAA1211 3'UTR 0.03 TCGA-E5-A4U1-01 4 6610897 6610897 G A MAN2B2 Silent p.V626V 0.55 TCGA-E5-A4U1-01 4 68536256 68536256 C T UBA6 Missense_Mutation p.D201N 0.23 tolerated(0.15) benign(0.059) TCGA-E5-A4U1-01 4 70146227 70146227 G A UGT2B28 Silent p.L3L 0.35 TCGA-E5-A4U1-01 4 71098715 71098715 C G FDCSP Missense_Mutation p.S21C 0.04 deleterious_low_confidence(0.04) possibly_damaging(0.843) TCGA-E5-A4U1-01 4 77700111 77700111 C T SHROOM3 Silent p.F1924F 0.59 TCGA-E5-A4U1-01 4 79372964 79372964 G A FRAS1 Missense_Mutation p.G2168R 0.45 probably_damaging(1) TCGA-E5-A4U1-01 4 79399178 79399178 G C FRAS1 Missense_Mutation p.E2687D 0.47 probably_damaging(0.979) TCGA-E5-A4U1-01 4 85611775 85611775 G C WDFY3 Missense_Mutation p.L3083V 0.44 tolerated(0.32) benign(0.014) TCGA-E5-A4U1-01 4 86921914 86921914 G A ARHGAP24 3'UTR 0.57 TCGA-E5-A4U1-01 4 87023066 87023066 G A MAPK10 Missense_Mutation p.S182F 0.49 deleterious(0) probably_damaging(0.922) TCGA-E5-A4U1-01 4 8869772 8869772 C T HMX1 Missense_Mutation p.E232K 0.43 deleterious(0) probably_damaging(0.998) TCGA-E5-A4U1-01 4 94690463 94690463 G A GRID2 Silent p.Q821Q 0.45 TCGA-E5-A4U1-01 4 951666 951666 C T TMEM175 Silent p.L299L 0.40 TCGA-E5-A4U1-01 4 95223384 95223384 G T HPGDS Missense_Mutation p.F116L 0.03 tolerated(0.56) benign(0.045) TCGA-E5-A4U1-01 5 112174552 112174552 C G APC Silent p.L1087L 0.11 TCGA-E5-A4U1-01 5 118505897 118505897 C G DMXL1 Nonsense_Mutation p.S1804* 0.61 TCGA-E5-A4U1-01 5 127595513 127595513 C G FBN2 Missense_Mutation p.Q2791H 0.41 tolerated(0.1) benign(0.005) TCGA-E5-A4U1-01 5 129519958 129519958 C T CHSY3 Missense_Mutation p.R375W 0.24 deleterious(0) probably_damaging(0.987) TCGA-E5-A4U1-01 5 135276380 135276380 A G FBXL21 RNA 0.70 TCGA-E5-A4U1-01 5 137499815 137499815 C T BRD8 Silent p.L611L 0.27 TCGA-E5-A4U1-01 5 137499823 137499823 C T BRD8 Splice_Site p.X609_splice 0.26 TCGA-E5-A4U1-01 5 137762695 137762695 G T KDM3B Missense_Mutation p.M1481I 0.08 deleterious(0.03) benign(0.218) TCGA-E5-A4U1-01 5 137762927 137762927 G A KDM3B Missense_Mutation p.D1518N 0.06 tolerated(0.07) benign(0.168) TCGA-E5-A4U1-01 5 137892240 137892240 G C HSPA9 Silent p.L621L 0.07 TCGA-E5-A4U1-01 5 139908299 139908299 C G ANKHD1 Nonsense_Mutation p.S1923* 0.22 TCGA-E5-A4U1-01 5 140431107 140431107 C T PCDHB1 Missense_Mutation p.L18F 0.17 tolerated(1) benign(0.003) TCGA-E5-A4U1-01 5 140502019 140502019 C G PCDHB4 Missense_Mutation p.P147A 0.31 deleterious_low_confidence(0.04) benign(0.178) TCGA-E5-A4U1-01 5 140782700 140782700 G C PCDHGA9 Missense_Mutation p.E61Q 0.31 deleterious_low_confidence(0.04) benign(0.308) TCGA-E5-A4U1-01 5 140783957 140783957 G A PCDHGA9 Missense_Mutation p.D480N 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-E5-A4U1-01 5 14389481 14389481 G T TRIO Missense_Mutation p.M1344I 0.05 benign(0.126) TCGA-E5-A4U1-01 5 149677095 149677095 G A ARSI Silent p.L464L 0.07 TCGA-E5-A4U1-01 5 150112943 150112943 G - DCTN4 Frame_Shift_Del p.P175Lfs*11 0.36 TCGA-E5-A4U1-01 5 159686479 159686479 G A CCNJL Nonsense_Mutation p.Q242* 0.35 TCGA-E5-A4U1-01 5 159839516 159839516 G A SLU7 Missense_Mutation p.T194I 0.45 tolerated(0.21) benign(0.34) TCGA-E5-A4U1-01 5 167915737 167915737 G A RARS Missense_Mutation p.R59Q 0.54 tolerated(0.47) benign(0.001) TCGA-E5-A4U1-01 5 169454900 169454900 G A DOCK2 Missense_Mutation p.E1139K 0.23 tolerated(0.2) possibly_damaging(0.815) TCGA-E5-A4U1-01 5 169463518 169463518 G C DOCK2 Splice_Site p.X1209_splice 0.57 TCGA-E5-A4U1-01 5 172550196 172550196 G C CREBRF Missense_Mutation p.D599H 0.65 tolerated(0.1) probably_damaging(0.924) TCGA-E5-A4U1-01 5 175581818 175581818 G T RP11-844P9.2 RNA 0.25 TCGA-E5-A4U1-01 5 175716740 175716740 G C SIMC1 Intron 0.12 TCGA-E5-A4U1-01 5 176637763 176637763 G C NSD1 Missense_Mutation p.R788P 0.29 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-E5-A4U1-01 5 176940701 176940701 G C DDX41 Missense_Mutation p.I361M 0.53 deleterious(0) benign(0.319) TCGA-E5-A4U1-01 5 177171892 177171892 C T FAM153A Missense_Mutation p.M35I 0.16 tolerated_low_confidence(0.07) benign(0.043) TCGA-E5-A4U1-01 5 180335831 180335831 C G BTNL8 Missense_Mutation p.L99V 0.06 deleterious(0.02) possibly_damaging(0.786) TCGA-E5-A4U1-01 5 21854861 21854861 C T CDH12 Missense_Mutation p.D189N 0.74 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 5 31526614 31526614 G A DROSHA Silent p.F142F 0.23 TCGA-E5-A4U1-01 5 32230022 32230022 G C MTMR12 Silent p.L702L 0.55 TCGA-E5-A4U1-01 5 32712192 32712192 G A NPR3 Missense_Mutation p.E104K 0.32 tolerated(0.3) benign(0.182) TCGA-E5-A4U1-01 5 33649673 33649673 G A ADAMTS12 Silent p.I440I 0.61 TCGA-E5-A4U1-01 5 35692776 35692776 G A SPEF2 Missense_Mutation p.D617N 0.05 tolerated(0.51) benign(0.003) TCGA-E5-A4U1-01 5 37326013 37326013 T A NUP155 Missense_Mutation p.E694V 0.54 tolerated(0.16) benign(0.01) TCGA-E5-A4U1-01 5 37326014 37326014 C G NUP155 Missense_Mutation p.E694Q 0.55 tolerated(0.5) benign(0.01) TCGA-E5-A4U1-01 5 38886188 38886188 G T OSMR Missense_Mutation p.W296L 0.60 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 5 39376112 39376112 G A DAB2 Missense_Mutation p.S745L 0.56 deleterious(0.04) possibly_damaging(0.517) TCGA-E5-A4U1-01 5 57790589 57790589 G T GAPT Nonsense_Mutation p.E76* 0.64 TCGA-E5-A4U1-01 5 60240978 60240978 G A NDUFAF2 5'UTR 0.62 TCGA-E5-A4U1-01 5 65460643 65460643 C T SREK1 Nonsense_Mutation p.R307* 0.30 TCGA-E5-A4U1-01 5 68524093 68524093 G A MRPS36 Missense_Mutation p.G58E 0.51 deleterious(0.04) possibly_damaging(0.572) TCGA-E5-A4U1-01 5 70808128 70808128 G A BDP1 Missense_Mutation p.E1374K 0.62 tolerated(0.05) benign(0.067) TCGA-E5-A4U1-01 5 7396424 7396424 G A ADCY2 Silent p.A5A 0.86 TCGA-E5-A4U1-01 5 76342394 76342394 G A AGGF1 Missense_Mutation p.D365N 0.61 tolerated(0.35) possibly_damaging(0.478) TCGA-E5-A4U1-01 5 78587035 78587035 C G JMY Silent p.L480L 0.05 TCGA-E5-A4U1-01 5 92923969 92923969 G A NR2F1 Silent p.P270P 0.60 TCGA-E5-A4U1-01 6 101248283 101248283 A C ASCC3 Nonsense_Mutation p.Y340* 0.52 TCGA-E5-A4U1-01 6 10695300 10695300 G A PAK1IP1 Missense_Mutation p.E28K 0.58 tolerated(0.3) benign(0.043) TCGA-E5-A4U1-01 6 109802512 109802512 C G ZBTB24 Missense_Mutation p.D240H 0.59 deleterious(0) benign(0.214) TCGA-E5-A4U1-01 6 116442971 116442971 G A COL10A1 Missense_Mutation p.S103L 0.52 tolerated(0.24) unknown(0) TCGA-E5-A4U1-01 6 116600642 116600642 C T TSPYL1 Missense_Mutation p.D118N 0.57 tolerated(0.12) benign(0.034) TCGA-E5-A4U1-01 6 116757173 116757173 G C DSE Missense_Mutation p.K514N 0.52 tolerated(0.06) probably_damaging(0.997) TCGA-E5-A4U1-01 6 117045483 117045483 C T KPNA5 Missense_Mutation p.S315L 0.28 deleterious(0) possibly_damaging(0.897) TCGA-E5-A4U1-01 6 117114160 117114160 G C GPRC6A Silent p.L642L 0.60 TCGA-E5-A4U1-01 6 117884440 117884440 G A GOPC Silent p.L456L 0.31 TCGA-E5-A4U1-01 6 119245037 119245037 G A MCM9 Missense_Mutation p.S187L 0.27 deleterious(0) benign(0.37) TCGA-E5-A4U1-01 6 123124903 123124903 G A SMPDL3A Silent p.L221L 0.57 TCGA-E5-A4U1-01 6 123319061 123319061 C G CLVS2 Missense_Mutation p.L47V 0.55 tolerated(0.29) possibly_damaging(0.771) TCGA-E5-A4U1-01 6 125550309 125550309 G C TPD52L1 Missense_Mutation p.E61Q 0.34 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 6 126242143 126242143 G C NCOA7 Missense_Mutation p.D767H 0.52 tolerated(0.08) possibly_damaging(0.67) TCGA-E5-A4U1-01 6 133045826 133045826 C A VNN3 3'UTR 0.46 TCGA-E5-A4U1-01 6 152477102 152477102 C G SYNE1 Missense_Mutation p.R7974T 0.27 possibly_damaging(0.863) TCGA-E5-A4U1-01 6 152565761 152565761 C G SYNE1 Missense_Mutation p.E6535Q 0.57 benign(0.432) TCGA-E5-A4U1-01 6 152784000 152784000 C T SYNE1 Missense_Mutation p.R708K 0.52 benign(0.012) TCGA-E5-A4U1-01 6 159103970 159103970 A G SYTL3 Missense_Mutation p.K115E 0.33 deleterious(0.01) possibly_damaging(0.611) TCGA-E5-A4U1-01 6 160105983 160105983 G A SOD2 Silent p.V142V 0.60 TCGA-E5-A4U1-01 6 167570376 167570376 C G GPR31 Missense_Mutation p.R315T 0.59 deleterious(0.02) benign(0.013) TCGA-E5-A4U1-01 6 26031885 26031885 C G HIST1H3B Missense_Mutation p.R135T 0.61 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-E5-A4U1-01 6 26157269 26157269 G C HIST1H1E Missense_Mutation p.K217N 0.59 deleterious(0) unknown(0) TCGA-E5-A4U1-01 6 26158619 26158619 C T HIST1H2BD Silent p.I74I 0.57 TCGA-E5-A4U1-01 6 26189115 26189115 C G HIST1H4D Missense_Mutation p.E64Q 0.63 deleterious(0) possibly_damaging(0.735) TCGA-E5-A4U1-01 6 28053307 28053307 G T ZNF165 Nonsense_Mutation p.E17* 0.61 TCGA-E5-A4U1-01 6 28227237 28227237 C A NKAPL Missense_Mutation p.P30T 0.27 tolerated(0.22) unknown(0) TCGA-E5-A4U1-01 6 28227839 28227839 G A NKAPL Silent p.K230K 0.45 TCGA-E5-A4U1-01 6 28227895 28227895 G A NKAPL Missense_Mutation p.S249N 0.50 tolerated(0.2) unknown(0) TCGA-E5-A4U1-01 6 2959519 2959519 C T SERPINB6 Silent p.L16L 0.04 TCGA-E5-A4U1-01 6 29624960 29624960 G A MOG 5'Flank 0.39 TCGA-E5-A4U1-01 6 30558484 30558484 C T ABCF1 3'UTR 0.06 TCGA-E5-A4U1-01 6 30692163 30692163 G C TUBB Missense_Mutation p.E442Q 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-E5-A4U1-01 6 31550142 31550142 G A LTB Missense_Mutation p.S18F 0.26 tolerated(0.67) unknown(0) TCGA-E5-A4U1-01 6 31629952 31629952 G A GPANK1 3'UTR 0.11 TCGA-E5-A4U1-01 6 31656525 31656525 G A ABHD16A Silent p.L409L 0.63 TCGA-E5-A4U1-01 6 31997503 31997503 A C C4B Silent p.A1279A 0.26 TCGA-E5-A4U1-01 6 32154196 32154196 T C PBX2 Missense_Mutation p.E419G 0.25 tolerated_low_confidence(0.32) benign(0.008) TCGA-E5-A4U1-01 6 32363975 32363975 C A BTNL2 Nonsense_Mutation p.E307* 0.28 TCGA-E5-A4U1-01 6 33256694 33256694 G T WDR46 Missense_Mutation p.Q56K 0.21 tolerated_low_confidence(0.23) benign(0.03) TCGA-E5-A4U1-01 6 33258577 33258577 C G PFDN6 Missense_Mutation p.F115L 0.24 tolerated(0.29) benign(0.013) TCGA-E5-A4U1-01 6 33283128 33283128 G C ZBTB22 Missense_Mutation p.F522L 0.26 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 6 33284441 33284441 G C ZBTB22 Missense_Mutation p.Q85E 0.20 deleterious(0) probably_damaging(0.982) TCGA-E5-A4U1-01 6 33996117 33996117 C A GRM4 Silent p.T823T 0.58 TCGA-E5-A4U1-01 6 34101214 34101214 G A GRM4 Silent p.L20L 0.55 TCGA-E5-A4U1-01 6 34962090 34962090 G C ANKS1A Missense_Mutation p.M438I 0.62 tolerated_low_confidence(0.29) benign(0.002) TCGA-E5-A4U1-01 6 34962168 34962168 G C ANKS1A Missense_Mutation p.K464N 0.46 deleterious_low_confidence(0) possibly_damaging(0.501) TCGA-E5-A4U1-01 6 36106508 36106508 G T MAPK13 Missense_Mutation p.Q264H 0.32 tolerated(0.48) benign(0.001) TCGA-E5-A4U1-01 6 37138635 37138635 C T PIM1 Missense_Mutation p.R57C 0.23 deleterious(0.02) probably_damaging(0.97) TCGA-E5-A4U1-01 6 38976669 38976669 G A DNAH8 Missense_Mutation p.E4215K 0.04 probably_damaging(0.917) TCGA-E5-A4U1-01 6 4069641 4069641 C T FAM217A Nonsense_Mutation p.W272* 0.60 TCGA-E5-A4U1-01 6 43042397 43042397 C G KLC4 Missense_Mutation p.S634C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-E5-A4U1-01 6 5368821 5368821 C T FARS2 Silent p.L6L 0.63 TCGA-E5-A4U1-01 6 55119999 55119999 C T HCRTR2 Silent p.I156I 0.23 TCGA-E5-A4U1-01 6 63990078 63990078 C G LGSN Missense_Mutation p.E460Q 0.70 tolerated(0.05) benign(0.066) TCGA-E5-A4U1-01 6 74125923 74125923 C T DDX43 Nonsense_Mutation p.Q641* 0.10 TCGA-E5-A4U1-01 6 75797372 75797372 G A COL12A1 Silent p.I3034I 0.60 TCGA-E5-A4U1-01 6 86387016 86387016 C G SNHG5 Intron 0.48 TCGA-E5-A4U1-01 6 96652147 96652147 G A FUT9 3'UTR 0.40 TCGA-E5-A4U1-01 7 100320699 100320699 C T EPO Silent p.F175F 0.33 TCGA-E5-A4U1-01 7 102087136 102087136 C T ORAI2 Silent p.I134I 0.50 TCGA-E5-A4U1-01 7 104782915 104782915 C T SRPK2 Silent p.E361E 0.06 TCGA-E5-A4U1-01 7 1049725 1049725 C T C7orf50 Missense_Mutation p.E62K 0.22 deleterious(0) possibly_damaging(0.461) TCGA-E5-A4U1-01 7 105662837 105662837 G A CDHR3 Silent p.V673V 0.81 TCGA-E5-A4U1-01 7 11441440 11441440 C G THSD7A Missense_Mutation p.E1465Q 0.74 tolerated(0.05) probably_damaging(0.999) TCGA-E5-A4U1-01 7 120428740 120428740 G A TSPAN12 Missense_Mutation p.S275L 0.86 deleterious(0.02) benign(0.027) TCGA-E5-A4U1-01 7 121012180 121012180 C A FAM3C Missense_Mutation p.L44F 0.71 tolerated(0.3) benign(0.008) TCGA-E5-A4U1-01 7 12692506 12692506 A C SCIN 3'UTR 0.60 TCGA-E5-A4U1-01 7 128478774 128478774 C T FLNC Missense_Mutation p.A443V 0.88 tolerated(0.93) benign(0.001) TCGA-E5-A4U1-01 7 138764924 138764924 G A ZC3HAV1 Nonsense_Mutation p.Q255* 0.05 TCGA-E5-A4U1-01 7 138845756 138845756 C T TTC26 Silent p.I260I 0.75 TCGA-E5-A4U1-01 7 140257971 140257971 C T DENND2A Missense_Mutation p.R644K 0.89 deleterious(0.01) probably_damaging(0.936) TCGA-E5-A4U1-01 7 142566046 142566046 C G EPHB6 Missense_Mutation p.Q656E 0.69 tolerated(0.71) benign(0.001) TCGA-E5-A4U1-01 7 14620502 14620502 G T DGKB Missense_Mutation p.L533M 0.63 deleterious(0) probably_damaging(0.994) TCGA-E5-A4U1-01 7 148767661 148767661 C T ZNF786 Missense_Mutation p.G735S 0.04 tolerated(0.42) possibly_damaging(0.544) TCGA-E5-A4U1-01 7 149420823 149420826 AGTG TAGTA KRBA1 Splice_Site p.X258_splice 0.48 TCGA-E5-A4U1-01 7 150027548 150027548 C A ZBED6CL Missense_Mutation p.Q19K 0.05 tolerated(0.14) possibly_damaging(0.722) TCGA-E5-A4U1-01 7 150642430 150642430 C T KCNH2 3'UTR 0.75 TCGA-E5-A4U1-01 7 19015468 19015468 G - HDAC9 Frame_Shift_Del p.G1022Afs*22 0.18 TCGA-E5-A4U1-01 7 23775422 23775422 C G STK31 Nonsense_Mutation p.S250* 0.05 TCGA-E5-A4U1-01 7 23871969 23871969 C G STK31 Missense_Mutation p.A1015G 0.26 deleterious_low_confidence(0.04) benign(0.08) TCGA-E5-A4U1-01 7 26232148 26232148 C T HNRNPA2B1 Silent p.R350R 0.23 TCGA-E5-A4U1-01 7 2983870 2983870 C T CARD11 Missense_Mutation p.M220I 0.22 deleterious(0.02) benign(0.011) TCGA-E5-A4U1-01 7 30893019 30893019 C T FAM188B Missense_Mutation p.H541Y 0.30 tolerated(0.46) benign(0.02) TCGA-E5-A4U1-01 7 36677472 36677472 C T AOAH Silent p.K145K 0.25 TCGA-E5-A4U1-01 7 44091445 44091445 G A DBNL Silent p.E52E 0.07 TCGA-E5-A4U1-01 7 48559844 48559844 C G ABCA13 Missense_Mutation p.L4669V 0.07 probably_damaging(0.99) TCGA-E5-A4U1-01 7 50673017 50673017 G A GRB10 Silent p.S453S 0.19 TCGA-E5-A4U1-01 7 53103781 53103781 C T POM121L12 Silent p.I139I 0.23 TCGA-E5-A4U1-01 7 5680995 5680995 C G RNF216 Missense_Mutation p.M724I 0.72 deleterious(0) benign(0.228) TCGA-E5-A4U1-01 7 73117244 73117244 G C STX1A Missense_Mutation p.I203M 0.31 tolerated(0.72) possibly_damaging(0.701) TCGA-E5-A4U1-01 7 74004241 74004241 C G GTF2IRD1 Silent p.L826L 0.40 TCGA-E5-A4U1-01 7 74148262 74148262 C G GTF2I Intron 0.42 TCGA-E5-A4U1-01 7 76797043 76797043 G A CCDC146 Missense_Mutation p.D20N 0.27 tolerated(0.14) unknown(0) TCGA-E5-A4U1-01 7 77649123 77649123 C T MAGI2 Missense_Mutation p.D1293N 0.04 tolerated(0.35) probably_damaging(0.959) TCGA-E5-A4U1-01 7 82996925 82996925 G A SEMA3E Missense_Mutation p.P769S 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-E5-A4U1-01 7 87190668 87190668 C G ABCB1 Silent p.A246A 0.47 TCGA-E5-A4U1-01 7 94024280 94024280 G A COL1A2 5'UTR 0.48 TCGA-E5-A4U1-01 7 98563429 98563429 G A TRRAP Missense_Mutation p.E2356K 0.54 possibly_damaging(0.852) TCGA-E5-A4U1-01 7 99013831 99013831 G C BUD31 Missense_Mutation p.Q55H 0.15 deleterious(0) benign(0.224) TCGA-E5-A4U1-01 7 99526685 99526685 C T GJC3 Missense_Mutation p.E187K 0.43 deleterious(0) probably_damaging(0.999) TCGA-E5-A4U1-01 7 99564778 99564778 C G AZGP1 Missense_Mutation p.E249Q 0.32 deleterious(0.03) benign(0.135) TCGA-E5-A4U1-01 8 124232391 124232391 G A C8orf76 Silent p.F365F 0.07 TCGA-E5-A4U1-01 8 12583373 12583373 C A LONRF1 Nonsense_Mutation p.E676* 0.10 TCGA-E5-A4U1-01 8 144808291 144808291 C T FAM83H Missense_Mutation p.E1114K 0.55 deleterious(0.01) possibly_damaging(0.627) TCGA-E5-A4U1-01 8 145617862 145617862 C G ADCK5 Missense_Mutation p.I490M 0.75 deleterious(0) probably_damaging(0.953) TCGA-E5-A4U1-01 8 145665842 145665842 C T TONSL Silent p.L394L 0.04 TCGA-E5-A4U1-01 8 145694704 145694704 C T KIFC2 Silent p.L388L 0.69 TCGA-E5-A4U1-01 8 1626493 1626493 C A DLGAP2 Nonsense_Mutation p.S721* 0.81 TCGA-E5-A4U1-01 8 17944618 17944618 C G ASAH1 5'Flank 0.79 TCGA-E5-A4U1-01 8 1905208 1905208 C G ARHGEF10 Missense_Mutation p.L1272V 0.09 tolerated(0.09) possibly_damaging(0.615) TCGA-E5-A4U1-01 8 24775357 24775357 G C NEFM Missense_Mutation p.E663D 0.05 tolerated(0.09) benign(0.217) TCGA-E5-A4U1-01 8 28966972 28966972 G C KIF13B Missense_Mutation p.I1380M 0.87 deleterious(0.04) benign(0.444) TCGA-E5-A4U1-01 8 38065106 38065106 C G BAG4 Nonsense_Mutation p.S152* 0.10 TCGA-E5-A4U1-01 8 41552280 41552280 G A ANK1 Nonsense_Mutation p.R1094* 0.33 TCGA-E5-A4U1-01 8 48874719 48874719 G A MCM4 Silent p.Q114Q 0.10 TCGA-E5-A4U1-01 8 55372409 55372409 C G SOX17 Missense_Mutation p.L367V 0.35 deleterious(0) probably_damaging(0.973) TCGA-E5-A4U1-01 8 72975702 72975702 C T TRPA1 Silent p.R219R 0.57 TCGA-E5-A4U1-01 8 77618234 77618234 G A ZFHX4 Silent p.S637S 0.24 TCGA-E5-A4U1-01 8 77618659 77618659 C A ZFHX4 Missense_Mutation p.A779D 0.33 possibly_damaging(0.82) TCGA-E5-A4U1-01 8 77618660 77618660 C A ZFHX4 Silent p.A779A 0.34 TCGA-E5-A4U1-01 8 82437306 82437306 G A FABP12 Missense_Mutation p.S133L 0.25 tolerated(0.28) benign(0) TCGA-E5-A4U1-01 8 91893321 91893321 A G NECAB1 Missense_Mutation p.N107S 0.08 deleterious(0.03) probably_damaging(0.985) TCGA-E5-A4U1-01 8 95186219 95186219 G A CDH17 Nonsense_Mutation p.Q197* 0.17 TCGA-E5-A4U1-01 8 95952279 95952279 C G TP53INP1 Missense_Mutation p.E94D 0.67 deleterious(0) probably_damaging(1) TCGA-E5-A4U1-01 8 95952410 95952410 C G TP53INP1 Missense_Mutation p.E51Q 0.55 tolerated(0.2) benign(0.083) TCGA-E5-A4U1-01 8 96281387 96281387 C T C8orf37 Missense_Mutation p.E11K 0.03 deleterious(0) probably_damaging(0.998) TCGA-E5-A4U1-01 8 99539008 99539008 C G STK3 Missense_Mutation p.D455H 0.37 tolerated(0.11) benign(0.005) TCGA-E5-A4U1-01 9 104448970 104448970 G A GRIN3A Silent p.T404T 0.87 TCGA-E5-A4U1-01 9 111855810 111855810 G A TMEM245 Silent p.I287I 0.90 TCGA-E5-A4U1-01 9 127996110 127996110 G C RABEPK Missense_Mutation p.E324Q 0.84 tolerated(0.11) benign(0.082) TCGA-E5-A4U1-01 9 131851380 131851380 C G DOLPP1 3'UTR 1.00 TCGA-E5-A4U1-01 9 133945108 133945108 C T LAMC3 Silent p.N980N 1.00 TCGA-E5-A4U1-01 9 135116329 135116329 G A NTNG2 Missense_Mutation p.D419N 0.81 tolerated(0.16) probably_damaging(0.983) TCGA-E5-A4U1-01 9 140354833 140354833 T C PNPLA7 3'UTR 1.00 TCGA-E5-A4U1-01 9 15459897 15459897 G A SNAPC3 3'UTR 0.94 TCGA-E5-A4U1-01 9 15489994 15489994 G C PSIP1 Nonsense_Mutation p.S93* 0.92 TCGA-E5-A4U1-01 9 21334109 21334109 G A KLHL9 Silent p.L250L 0.05 TCGA-E5-A4U1-01 9 33935847 33935847 C G UBAP2 Missense_Mutation p.Q653H 0.75 tolerated(0.22) benign(0.042) TCGA-E5-A4U1-01 9 35754176 35754176 C G MSMP 5'UTR 0.75 TCGA-E5-A4U1-01 9 5920223 5920223 G C KIAA2026 Missense_Mutation p.L1925V 0.36 tolerated(0.67) probably_damaging(0.978) TCGA-E5-A4U1-01 9 730244 730244 C T KANK1 Silent p.L964L 0.11 TCGA-E5-A4U1-01 9 91077501 91077501 G C SPIN1 Missense_Mutation p.E64D 0.10 tolerated(0.07) benign(0.006) TCGA-E5-A4U1-01 X 102337230 102337230 G C NXF3 Missense_Mutation p.D281E 0.13 tolerated(0.85) benign(0.023) TCGA-E5-A4U1-01 X 106110053 106110053 G A TBC1D8B Missense_Mutation p.E897K 0.91 deleterious(0) benign(0.088) TCGA-E5-A4U1-01 X 11135429 11135429 G T HCCS Missense_Mutation p.A99S 0.43 tolerated(0.18) benign(0.014) TCGA-E5-A4U1-01 X 139040374 139040374 C G CXorf66 Missense_Mutation p.D31H 0.12 deleterious(0.01) benign(0.094) TCGA-E5-A4U1-01 X 1475206 1475206 C T IL3RA Missense_Mutation p.R237C 0.48 tolerated(0.06) possibly_damaging(0.505) TCGA-E5-A4U1-01 X 2670374 2670374 G A XG Missense_Mutation p.R20Q 0.04 tolerated(0.29) possibly_damaging(0.776) TCGA-E5-A4U1-01 X 27999090 27999090 G T DCAF8L1 Missense_Mutation p.P121Q 0.97 tolerated_low_confidence(0.59) benign(0.025) TCGA-E5-A4U1-01 X 32328367 32328367 C A DMD Missense_Mutation p.M1983I 0.38 benign(0.001) TCGA-E5-A4U1-01 X 35985791 35985791 A G CXorf22 Silent p.A552A 0.31 TCGA-E5-A4U1-01 X 47039815 47039815 C G RBM10 Intron 0.95 TCGA-E5-A4U1-01 X 47083822 47083822 G T CDK16 Nonsense_Mutation p.E155* 0.10 TCGA-E5-A4U1-01 X 49957477 49957477 G A AKAP4 Silent p.I629I 0.79 TCGA-E5-A4U1-01 X 51638299 51638299 C G MAGED1 Missense_Mutation p.Q122E 0.94 tolerated_low_confidence(0.17) unknown(0) TCGA-E5-A4U1-01 X 52844142 52844142 G A XAGE5 Missense_Mutation p.E69K 0.98 deleterious(0.04) benign(0.005) TCGA-E5-A4U1-01 X 601575 601575 G A SHOX Missense_Mutation p.R169K 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-E5-A4U1-01 X 77912675 77912675 G A ZCCHC5 Missense_Mutation p.P415S 0.06 tolerated(0.41) benign(0.03) TCGA-E5-A4U1-01 X 9864259 9864259 G A SHROOM2 Missense_Mutation p.E771K 0.83 tolerated(0.11) probably_damaging(0.948) TCGA-E5-A4U1-01 Y 15467873 15467873 C G UTY Missense_Mutation p.R435T 0.82 deleterious(0.01) possibly_damaging(0.889) TCGA-E5-A4U1-01 Y 23557842 23557842 T A RBMY2EP RNA 0.94 TCGA-E5-A4U1-01 Y 2844836 2844836 G T ZFY Missense_Mutation p.V352L 0.27 tolerated(0.47) benign(0.003) TCGA-E7-A3X6-01 10 28903604 28903604 C T WAC Nonsense_Mutation p.Q516* 0.33 TCGA-E7-A3X6-01 11 133789947 133789947 G C IGSF9B Missense_Mutation p.R1225G 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A3X6-01 11 34097866 34097866 T C CAPRIN1 Silent p.L150L 0.52 TCGA-E7-A3X6-01 11 34097867 34097867 G A CAPRIN1 Missense_Mutation p.E151K 0.50 deleterious(0) probably_damaging(0.998) TCGA-E7-A3X6-01 11 4661394 4661394 C T OR51D1 Missense_Mutation p.S125L 0.60 deleterious(0) benign(0.065) TCGA-E7-A3X6-01 11 4661499 4661499 C T OR51D1 Missense_Mutation p.S160F 0.48 deleterious(0.01) benign(0.003) TCGA-E7-A3X6-01 11 58893878 58893878 G C FAM111B 3'UTR 0.44 TCGA-E7-A3X6-01 11 65385501 65385501 A G PCNXL3 Missense_Mutation p.D223G 0.47 tolerated(0.18) benign(0) TCGA-E7-A3X6-01 11 70332827 70332827 C T SHANK2 Missense_Mutation p.A1192T 0.23 tolerated(0.51) benign(0.005) TCGA-E7-A3X6-01 12 109095087 109095087 C G CORO1C Missense_Mutation p.R3P 0.34 tolerated(0.07) probably_damaging(0.995) TCGA-E7-A3X6-01 12 30863384 30863384 G A CAPRIN2 Nonsense_Mutation p.Q896* 0.36 TCGA-E7-A3X6-01 13 100154005 100154005 G A TM9SF2 Missense_Mutation p.E49K 0.48 tolerated(0.76) benign(0.002) TCGA-E7-A3X6-01 13 48611984 48611984 G C NUDT15 Missense_Mutation p.R34S 0.50 deleterious(0) probably_damaging(0.997) TCGA-E7-A3X6-01 13 79928636 79928636 G C RBM26 Missense_Mutation p.P639A 0.05 tolerated(0.6) probably_damaging(0.987) TCGA-E7-A3X6-01 14 105411641 105411641 C T AHNAK2 Missense_Mutation p.E3383K 0.30 benign(0.061) TCGA-E7-A3X6-01 14 20928871 20928871 G A TMEM55B Silent p.N99N 0.26 TCGA-E7-A3X6-01 14 24910185 24910185 C T KHNYN 3'UTR 0.31 TCGA-E7-A3X6-01 14 34985421 34985421 C T EAPP 3'UTR 0.37 TCGA-E7-A3X6-01 14 50626242 50626242 C G SOS2 Missense_Mutation p.E587Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-E7-A3X6-01 14 55817155 55817155 C T FBXO34 Missense_Mutation p.P16L 0.24 tolerated(1) benign(0) TCGA-E7-A3X6-01 14 73683862 73683862 C A PSEN1 Missense_Mutation p.F386L 0.40 deleterious(0) possibly_damaging(0.837) TCGA-E7-A3X6-01 15 40630039 40630040 - C C15orf52 Frame_Shift_Ins p.D234Gfs*26 0.21 TCGA-E7-A3X6-01 15 63354444 63354444 G C TPM1 Missense_Mutation p.E224Q 0.29 tolerated(0.16) probably_damaging(1) TCGA-E7-A3X6-01 15 66794183 66794183 C G RPL4 Missense_Mutation p.K163N 0.38 deleterious(0) probably_damaging(0.972) TCGA-E7-A3X6-01 15 80215418 80215418 G T C15orf37 Silent p.G101G 0.42 TCGA-E7-A3X6-01 15 90771602 90771602 C - SEMA4B Frame_Shift_Del p.L748* 0.35 TCGA-E7-A3X6-01 16 1271924 1271924 G C TPSG1 Missense_Mutation p.S277C 0.29 tolerated(0.06) probably_damaging(0.963) TCGA-E7-A3X6-01 16 1271985 1271985 G A TPSG1 Missense_Mutation p.R257C 0.26 deleterious(0) probably_damaging(0.928) TCGA-E7-A3X6-01 16 23707297 23707297 C T ERN2 Missense_Mutation p.E558K 0.35 tolerated(0.14) benign(0.216) TCGA-E7-A3X6-01 16 30521724 30521724 G A ITGAL Missense_Mutation p.E851K 0.31 tolerated(0.18) benign(0.078) TCGA-E7-A3X6-01 16 55362791 55362791 G C IRX6 Missense_Mutation p.E301Q 0.27 tolerated(0.16) possibly_damaging(0.649) TCGA-E7-A3X6-01 16 68716273 68716273 C T CDH3 Silent p.D355D 0.37 TCGA-E7-A3X6-01 16 69458658 69458658 C T CYB5B Silent p.V24V 0.35 TCGA-E7-A3X6-01 16 89967083 89967083 C G TCF25 Missense_Mutation p.S421C 0.36 deleterious(0) probably_damaging(1) TCGA-E7-A3X6-01 17 2227760 2227760 G A SRR 3'UTR 0.41 TCGA-E7-A3X6-01 17 47302012 47302012 G A PHOSPHO1 Missense_Mutation p.R159C 0.33 deleterious(0) probably_damaging(0.985) TCGA-E7-A3X6-01 17 51901070 51901070 C T KIF2B Nonsense_Mutation p.R226* 0.38 TCGA-E7-A3X6-01 17 66972297 66972297 G T ABCA9 Silent p.L1585L 0.24 TCGA-E7-A3X6-01 17 7697658 7697658 C G DNAH2 Missense_Mutation p.I2552M 0.39 probably_damaging(0.997) TCGA-E7-A3X6-01 17 7843441 7843441 G T CNTROB Missense_Mutation p.A398S 0.27 tolerated(0.14) benign(0.161) TCGA-E7-A3X6-01 17 79477994 79477994 T C ACTG1 Missense_Mutation p.K315E 0.35 deleterious_low_confidence(0.01) benign(0) TCGA-E7-A3X6-01 17 79534448 79534448 G C NPLOC4 Missense_Mutation p.L521V 0.42 deleterious(0.01) probably_damaging(0.929) TCGA-E7-A3X6-01 18 30554631 30554631 C G CCDC178 Missense_Mutation p.Q801H 0.50 deleterious(0.01) probably_damaging(0.974) TCGA-E7-A3X6-01 18 43534669 43534669 C G EPG5 Silent p.V233V 0.57 TCGA-E7-A3X6-01 18 43535299 43535299 C G EPG5 Missense_Mutation p.K23N 0.50 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-E7-A3X6-01 19 12780828 12780828 G A WDR83 Silent p.K47K 0.28 TCGA-E7-A3X6-01 19 13246039 13246039 G C NACC1 Missense_Mutation p.Q6H 0.25 tolerated(0.56) benign(0.046) TCGA-E7-A3X6-01 19 22847622 22847622 A C ZNF492 Missense_Mutation p.K384T 0.23 deleterious(0.02) probably_damaging(0.913) TCGA-E7-A3X6-01 19 23159445 23159445 C T ZNF728 Missense_Mutation p.E232K 0.27 tolerated(0.08) benign(0.035) TCGA-E7-A3X6-01 19 35533347 35533347 C T HPN 5'UTR 0.44 TCGA-E7-A3X6-01 19 39098807 39098807 C T MAP4K1 Missense_Mutation p.R337Q 0.27 tolerated(0.62) benign(0.003) TCGA-E7-A3X6-01 19 3959237 3959237 G A DAPK3 Silent p.L409L 0.44 TCGA-E7-A3X6-01 19 39883109 39883109 G C MED29 Missense_Mutation p.L95F 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-E7-A3X6-01 19 46998146 46998146 C T PNMAL2 Missense_Mutation p.E193K 0.34 deleterious(0) probably_damaging(0.986) TCGA-E7-A3X6-01 19 50826951 50826951 C T KCNC3 Missense_Mutation p.R420H 0.22 deleterious(0) probably_damaging(0.999) TCGA-E7-A3X6-01 19 54849825 54849825 G C LILRA4 Nonsense_Mutation p.S66* 0.26 TCGA-E7-A3X6-01 19 57840563 57840563 C T ZNF543 Missense_Mutation p.S578L 0.36 tolerated(0.66) benign(0.016) TCGA-E7-A3X6-01 19 8661877 8661877 A G ADAMTS10 Missense_Mutation p.I345T 0.29 deleterious(0) probably_damaging(0.957) TCGA-E7-A3X6-01 1 10713996 10713996 C T CASZ1 Silent p.P706P 0.25 TCGA-E7-A3X6-01 1 1149375 1149375 C T TNFRSF4 Missense_Mutation p.E45K 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-E7-A3X6-01 1 117078651 117078651 A T CD58 Silent p.T188T 0.04 TCGA-E7-A3X6-01 1 146747112 146747112 C A CHD1L Missense_Mutation p.H456N 0.48 deleterious(0) probably_damaging(0.995) TCGA-E7-A3X6-01 1 149903264 149903264 G A MTMR11 Missense_Mutation p.S393L 0.37 tolerated(0.12) benign(0.012) TCGA-E7-A3X6-01 1 151262304 151262304 G A ZNF687 Missense_Mutation p.E929K 0.67 deleterious(0.04) benign(0.176) TCGA-E7-A3X6-01 1 156242175 156242175 G A SMG5 Nonsense_Mutation p.Q217* 0.19 TCGA-E7-A3X6-01 1 156243158 156243158 G C SMG5 Missense_Mutation p.Q210E 0.30 tolerated(0.45) benign(0.029) TCGA-E7-A3X6-01 1 15860766 15860766 G A DNAJC16 Missense_Mutation p.D68N 0.51 tolerated(0.2) probably_damaging(0.981) TCGA-E7-A3X6-01 1 15863024 15863024 G C DNAJC16 Missense_Mutation p.E97Q 0.50 deleterious(0.02) benign(0.375) TCGA-E7-A3X6-01 1 15986519 15986519 T C RSC1A1 Silent p.A52A 0.46 TCGA-E7-A3X6-01 1 17942675 17942675 C T ARHGEF10L Silent p.F271F 0.31 TCGA-E7-A3X6-01 1 186106714 186106714 G A HMCN1 Missense_Mutation p.C4556Y 0.44 probably_damaging(0.996) TCGA-E7-A3X6-01 1 209933433 209933433 G A TRAF3IP3 Missense_Mutation p.E17K 0.32 deleterious(0) probably_damaging(0.999) TCGA-E7-A3X6-01 1 23418794 23418794 C G LUZP1 Missense_Mutation p.R654T 0.32 tolerated(0.08) benign(0.268) TCGA-E7-A3X6-01 1 23418882 23418882 C T LUZP1 Missense_Mutation p.E625K 0.33 deleterious(0.01) possibly_damaging(0.731) TCGA-E7-A3X6-01 1 23419917 23419929 TCTTTTCATTTTC CCTTTCCTTTTT LUZP1 Frame_Shift_Del p.E276Kfs*40 0.22 TCGA-E7-A3X6-01 1 23419929 23419929 C T LUZP1 Missense_Mutation p.E276K 0.21 tolerated(0.22) probably_damaging(0.988) TCGA-E7-A3X6-01 1 238053473 238053473 T G ZP4 Missense_Mutation p.N60T 0.48 tolerated(0.91) benign(0.001) TCGA-E7-A3X6-01 1 241951205 241951205 C G WDR64 Silent p.L910L 0.42 TCGA-E7-A3X6-01 1 27212601 27212601 C G GPN2 Missense_Mutation p.E198Q 0.28 deleterious(0.04) possibly_damaging(0.619) TCGA-E7-A3X6-01 1 28833932 28833933 - GG SNORA73B 5'Flank 0.21 TCGA-E7-A3X6-01 1 33363847 33363847 C G TMEM54 Silent p.V30V 0.26 TCGA-E7-A3X6-01 1 33363913 33363913 C T TMEM54 Silent p.L8L 0.22 TCGA-E7-A3X6-01 20 48098781 48098781 G A KCNB1 Silent p.D79D 0.43 TCGA-E7-A3X6-01 20 50051848 50051848 T C NFATC2 Missense_Mutation p.M637V 0.32 tolerated(0.18) benign(0.063) TCGA-E7-A3X6-01 20 60963538 60963538 G C RPS21 3'UTR 0.27 TCGA-E7-A3X6-01 20 62173828 62173828 C T SRMS Missense_Mutation p.G251D 0.30 tolerated(0.24) benign(0.026) TCGA-E7-A3X6-01 21 30380387 30380387 G A RWDD2B Silent p.F140F 0.25 TCGA-E7-A3X6-01 21 43897508 43897508 G A RSPH1 Missense_Mutation p.P207L 0.35 tolerated(0.15) probably_damaging(0.979) TCGA-E7-A3X6-01 21 46951324 46951324 C T SLC19A1 Missense_Mutation p.D310N 0.27 deleterious(0) probably_damaging(0.981) TCGA-E7-A3X6-01 22 29917011 29917011 T C THOC5 Missense_Mutation p.N418S 0.30 deleterious(0) benign(0.041) TCGA-E7-A3X6-01 22 30198142 30198142 G A ASCC2 Missense_Mutation p.S470F 0.37 deleterious(0) possibly_damaging(0.806) TCGA-E7-A3X6-01 22 39497957 39497957 C T APOBEC3H Silent p.H151H 0.34 TCGA-E7-A3X6-01 2 133542927 133542927 G A NCKAP5 Missense_Mutation p.A486V 0.31 tolerated(0.16) possibly_damaging(0.763) TCGA-E7-A3X6-01 2 179393575 179393575 C T TTN Missense_Mutation p.D35635N 0.38 TCGA-E7-A3X6-01 2 179430575 179430575 C T TTN Missense_Mutation p.E26762K 0.28 TCGA-E7-A3X6-01 2 213872226 213872226 A G IKZF2 Missense_Mutation p.F480S 0.13 deleterious(0) probably_damaging(0.993) TCGA-E7-A3X6-01 2 241514466 241514466 G T RNPEPL1 Silent p.L205L 0.12 TCGA-E7-A3X6-01 2 25990544 25990544 G C ASXL2 Nonsense_Mutation p.S228* 0.42 TCGA-E7-A3X6-01 3 121980624 121980624 G C CASR Missense_Mutation p.D248H 0.27 deleterious(0.05) possibly_damaging(0.459) TCGA-E7-A3X6-01 3 129303367 129303367 G C PLXND1 Silent p.L630L 0.39 TCGA-E7-A3X6-01 3 142681210 142681210 G A PAQR9 Silent p.Y323Y 0.09 TCGA-E7-A3X6-01 3 3886477 3886477 G A LRRN1 Missense_Mutation p.R51K 0.28 tolerated(0.51) benign(0.003) TCGA-E7-A3X6-01 3 47717003 47717003 G C SMARCC1 Missense_Mutation p.L601V 0.30 deleterious(0.03) probably_damaging(0.94) TCGA-E7-A3X6-01 3 48732710 48732710 G A IP6K2 Silent p.F5F 0.47 TCGA-E7-A3X6-01 3 53907147 53907147 G A ACTR8 Missense_Mutation p.S358F 0.44 deleterious(0.03) possibly_damaging(0.854) TCGA-E7-A3X6-01 3 97868522 97868522 A C OR5H14 Missense_Mutation p.K98T 0.33 deleterious(0.01) benign(0.004) TCGA-E7-A3X6-01 3 9974314 9974314 C T IL17RC Silent p.L541L 0.27 TCGA-E7-A3X6-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.70 deleterious(0.01) possibly_damaging(0.594) TCGA-E7-A3X6-01 4 46967082 46967082 G C GABRA4 Missense_Mutation p.Q347E 0.28 tolerated(0.13) probably_damaging(0.997) TCGA-E7-A3X6-01 4 57220365 57220365 C G AASDH Missense_Mutation p.R408T 0.18 deleterious(0) probably_damaging(0.973) TCGA-E7-A3X6-01 5 140432013 140432013 C T PCDHB1 Nonsense_Mutation p.Q320* 0.54 TCGA-E7-A3X6-01 5 86672272 86672272 C G RASA1 Missense_Mutation p.L692V 0.41 deleterious(0.03) probably_damaging(0.952) TCGA-E7-A3X6-01 6 155566797 155566797 C T TIAM2 Missense_Mutation p.A1195V 0.28 deleterious(0) benign(0.359) TCGA-E7-A3X6-01 6 158330750 158330750 G C SNX9 Silent p.V253V 0.29 TCGA-E7-A3X6-01 6 31660605 31660605 G C ABHD16A Intron 0.38 TCGA-E7-A3X6-01 6 31712335 31712335 G A MSH5 Silent p.V220V 0.39 TCGA-E7-A3X6-01 6 74229695 74229696 - CGAATCTA EEF1A1 Nonsense_Mutation p.G19* 0.26 TCGA-E7-A3X6-01 6 74229729 74229729 A G EEF1A1 Silent p.H7H 0.36 TCGA-E7-A3X6-01 6 87967337 87967337 C T ZNF292 Silent p.F1330F 0.29 TCGA-E7-A3X6-01 7 100609833 100609833 G C MUC3A Missense_Mutation p.E825Q 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-E7-A3X6-01 7 104730618 104730618 G A KMT2E Silent p.Q507Q 0.31 TCGA-E7-A3X6-01 7 104731737 104731737 G A KMT2E Silent p.Q566Q 0.22 TCGA-E7-A3X6-01 7 104731744 104731744 G A KMT2E Missense_Mutation p.E569K 0.20 deleterious(0.03) benign(0.292) TCGA-E7-A3X6-01 7 104731755 104731755 G A KMT2E Silent p.R572R 0.21 TCGA-E7-A3X6-01 7 142750161 142750161 C A OR6V1 Missense_Mutation p.H242N 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-E7-A3X6-01 7 143884195 143884195 G A ARHGEF35 Missense_Mutation p.L428F 0.24 tolerated(0.51) benign(0.001) TCGA-E7-A3X6-01 7 44157603 44157603 A T POLD2 Missense_Mutation p.V94E 0.37 deleterious(0) benign(0.297) TCGA-E7-A3X6-01 7 70255358 70255358 C T AUTS2 Silent p.I1052I 0.20 TCGA-E7-A3X6-01 7 92848628 92848628 T A HEPACAM2 Missense_Mutation p.R72S 0.32 tolerated(0.2) possibly_damaging(0.791) TCGA-E7-A3X6-01 7 95165854 95165854 G A ASB4 Missense_Mutation p.D362N 0.26 tolerated(0.18) benign(0.014) TCGA-E7-A3X6-01 7 97821587 97821587 G C LMTK2 Missense_Mutation p.E604Q 0.32 tolerated(0.48) possibly_damaging(0.536) TCGA-E7-A3X6-01 8 103357737 103357737 G C UBR5 Missense_Mutation p.S258C 0.30 deleterious(0.01) probably_damaging(0.964) TCGA-E7-A3X6-01 8 103357753 103357753 C G UBR5 Missense_Mutation p.D253H 0.35 deleterious(0) probably_damaging(0.986) TCGA-E7-A3X6-01 8 33371075 33371075 T A TTI2 5'UTR 0.53 TCGA-E7-A3X6-01 8 67342655 67342655 G C RRS1 3'UTR 0.32 TCGA-E7-A3X6-01 9 116132396 116132396 G C BSPRY Missense_Mutation p.D395H 0.57 tolerated(0.3) possibly_damaging(0.776) TCGA-E7-A3X6-01 9 116999271 116999271 G A COL27A1 Missense_Mutation p.G877E 0.55 unknown(0) TCGA-E7-A3X6-01 9 131370245 131370245 G A SPTAN1 Missense_Mutation p.D1421N 0.60 tolerated(0.18) benign(0.01) TCGA-E7-A3X6-01 9 131370275 131370275 G C SPTAN1 Missense_Mutation p.E1431Q 0.51 deleterious(0) probably_damaging(0.964) TCGA-E7-A3X6-01 9 131370487 131370487 G A SPTAN1 Missense_Mutation p.D1475N 0.57 tolerated(0.12) benign(0.049) TCGA-E7-A3X6-01 9 131371156 131371156 G AA SPTAN1 Frame_Shift_Ins p.E1499Kfs*26 0.28 TCGA-E7-A3X6-01 9 131371219 131371219 G A SPTAN1 Missense_Mutation p.G1520R 0.34 tolerated(0.4) unknown(0) TCGA-E7-A3X6-01 9 131371243 131371243 G A SPTAN1 Missense_Mutation p.E1528K 0.36 tolerated(0.19) unknown(0) TCGA-E7-A3X6-01 9 131371429 131371429 G A SPTAN1 Missense_Mutation p.E1542K 0.44 tolerated(0.16) unknown(0) TCGA-E7-A3X6-01 9 131371495 131371495 G A SPTAN1 Missense_Mutation p.E1564K 0.57 tolerated(0.05) unknown(0) TCGA-E7-A3X6-01 9 131374105 131374105 G A SPTAN1 Missense_Mutation p.G1629D 0.44 deleterious(0.04) benign(0.004) TCGA-E7-A3X6-01 9 131374110 131374110 G A SPTAN1 Missense_Mutation p.E1631K 0.45 deleterious(0) benign(0.005) TCGA-E7-A3X6-01 9 131377919 131377919 G A SPTAN1 Silent p.L1719L 0.42 TCGA-E7-A3X6-01 9 131378027 131378027 G C SPTAN1 Missense_Mutation p.K1755N 0.41 deleterious(0.02) possibly_damaging(0.757) TCGA-E7-A3X6-01 9 131378038 131378038 C T SPTAN1 Missense_Mutation p.A1759V 0.41 tolerated(0.05) benign(0.02) TCGA-E7-A3X6-01 X 109764407 109764407 T C TDGF1P3 RNA 0.15 TCGA-E7-A3Y1-01 10 1066766 1066766 C T IDI2 Missense_Mutation p.G103R 0.43 deleterious(0) probably_damaging(1) TCGA-E7-A3Y1-01 10 134981802 134981802 G C KNDC1 Missense_Mutation p.G116R 0.37 deleterious(0) probably_damaging(0.992) TCGA-E7-A3Y1-01 10 16994309 16994309 C T CUBN Silent p.Q1645Q 0.42 TCGA-E7-A3Y1-01 10 28358781 28358781 C A MPP7 Missense_Mutation p.G375V 0.41 deleterious(0) probably_damaging(1) TCGA-E7-A3Y1-01 10 28358782 28358782 C A MPP7 Splice_Site p.X375_splice 0.43 TCGA-E7-A3Y1-01 10 72520532 72520532 C G ADAMTS14 Missense_Mutation p.P1202A 0.34 tolerated_low_confidence(0.07) benign(0.005) TCGA-E7-A3Y1-01 10 74034625 74034625 G A DDIT4 Silent p.Q126Q 0.38 TCGA-E7-A3Y1-01 11 101954000 101954000 A T C11orf70 3'UTR 0.41 TCGA-E7-A3Y1-01 11 103124075 103124075 C G DYNC2H1 Silent p.L3375L 0.40 TCGA-E7-A3Y1-01 11 103908520 103908520 C A DDI1 Missense_Mutation p.Q324K 0.35 tolerated(0.08) benign(0.215) TCGA-E7-A3Y1-01 11 113145992 113145992 G A NCAM1 Silent p.K869K 0.43 TCGA-E7-A3Y1-01 11 124489476 124489476 C T PANX3 Missense_Mutation p.S275F 0.31 deleterious(0.01) possibly_damaging(0.636) TCGA-E7-A3Y1-01 11 20180780 20180780 G A DBX1 Silent p.F142F 0.05 TCGA-E7-A3Y1-01 11 32954330 32954330 G T QSER1 Missense_Mutation p.G380V 0.40 deleterious(0.02) benign(0.342) TCGA-E7-A3Y1-01 11 43465060 43465060 G A TTC17 Missense_Mutation p.G813S 0.07 tolerated(0.22) benign(0.026) TCGA-E7-A3Y1-01 11 57100511 57100511 G A SSRP1 Silent p.N153N 0.44 TCGA-E7-A3Y1-01 11 65375774 65375774 C T MAP3K11 Silent p.K295K 0.26 TCGA-E7-A3Y1-01 11 85956176 85956176 G T EED 5'UTR 0.50 TCGA-E7-A3Y1-01 11 88583193 88583193 G A GRM5 Silent p.L264L 0.36 TCGA-E7-A3Y1-01 11 88583292 88583292 G C GRM5 Missense_Mutation p.F231L 0.43 tolerated(0.18) probably_damaging(0.996) TCGA-E7-A3Y1-01 11 99944885 99944885 C A CNTN5 Missense_Mutation p.P480H 0.60 deleterious(0) probably_damaging(0.947) TCGA-E7-A3Y1-01 11 99944886 99944886 C A CNTN5 Silent p.P480P 0.60 TCGA-E7-A3Y1-01 12 101880371 101880371 C T SPIC Missense_Mutation p.T190I 0.09 deleterious(0) possibly_damaging(0.558) TCGA-E7-A3Y1-01 12 102796128 102796128 G A IGF1 3'UTR 0.41 TCGA-E7-A3Y1-01 12 104067714 104067714 A G STAB2 Missense_Mutation p.N801D 0.47 deleterious(0) possibly_damaging(0.457) TCGA-E7-A3Y1-01 12 104092983 104092983 G A STAB2 Missense_Mutation p.S1231N 0.40 deleterious(0.01) benign(0.109) TCGA-E7-A3Y1-01 12 112585986 112585986 G T TRAFD1 Missense_Mutation p.A346S 0.11 tolerated(0.74) benign(0.065) TCGA-E7-A3Y1-01 12 122626341 122626341 G A MLXIP Silent p.K914K 0.36 TCGA-E7-A3Y1-01 12 126138270 126138270 G T TMEM132B Nonsense_Mutation p.E751* 0.35 TCGA-E7-A3Y1-01 12 13526293 13526293 G A C12orf36 Missense_Mutation p.P88S 0.42 benign(0.02) TCGA-E7-A3Y1-01 12 20874968 20874968 A T SLCO1C1 Missense_Mutation p.M336L 0.36 tolerated(0.68) benign(0) TCGA-E7-A3Y1-01 12 3040245 3040245 G C TULP3 Missense_Mutation p.D179H 0.37 tolerated(0.06) benign(0.117) TCGA-E7-A3Y1-01 12 45567306 45567306 A - PLEKHA8P1 RNA 0.27 TCGA-E7-A3Y1-01 12 49425478 49425478 G - KMT2D Frame_Shift_Del p.P4337Lfs*47 0.34 TCGA-E7-A3Y1-01 12 49442929 49442929 C - KMT2D Frame_Shift_Del p.A1327Pfs*3 0.18 TCGA-E7-A3Y1-01 12 49994518 49994518 C - FAM186B Frame_Shift_Del p.G302Efs*8 0.09 TCGA-E7-A3Y1-01 12 5154246 5154246 G A KCNA5 Silent p.T311T 0.36 TCGA-E7-A3Y1-01 12 52827910 52827910 C T KRT75 Missense_Mutation p.R60H 0.08 deleterious(0.04) benign(0.037) TCGA-E7-A3Y1-01 12 52862934 52862934 C T KRT6C Missense_Mutation p.G536E 0.24 tolerated(0.19) unknown(0) TCGA-E7-A3Y1-01 12 6499851 6499851 C T LTBR Silent p.G352G 0.42 TCGA-E7-A3Y1-01 12 6664699 6664699 G A IFFO1 Missense_Mutation p.P166L 0.16 tolerated(0.07) probably_damaging(0.961) TCGA-E7-A3Y1-01 12 8758001 8758001 G A AICDA Silent p.T79T 0.27 TCGA-E7-A3Y1-01 13 19747924 19747924 A G TUBA3C 3'UTR 0.40 TCGA-E7-A3Y1-01 13 61987073 61987073 C A PCDH20 Nonsense_Mutation p.G387* 0.37 TCGA-E7-A3Y1-01 13 73636642 73636642 C A KLF5 Missense_Mutation p.P302Q 0.50 deleterious(0) probably_damaging(0.993) TCGA-E7-A3Y1-01 14 102808061 102808061 G A ZNF839 Missense_Mutation p.D777N 0.07 tolerated(0.29) benign(0.415) TCGA-E7-A3Y1-01 14 106092258 106092258 C - IGHG4 Frame_Shift_Del p.G49Afs*21 0.15 TCGA-E7-A3Y1-01 14 20296395 20296395 G T OR4N2 Missense_Mutation p.R263M 0.41 deleterious(0.04) possibly_damaging(0.778) TCGA-E7-A3Y1-01 14 22471897 22471897 A G TRAV18 Missense_Mutation p.Y107C 0.27 deleterious(0.01) benign(0.399) TCGA-E7-A3Y1-01 14 30100021 30100021 C T PRKD1 Silent p.E533E 0.06 TCGA-E7-A3Y1-01 14 45605269 45605269 G A FANCM Nonsense_Mutation p.W12* 0.35 TCGA-E7-A3Y1-01 14 50100212 50100212 C A DNAAF2 Missense_Mutation p.L552F 0.26 deleterious(0.01) possibly_damaging(0.839) TCGA-E7-A3Y1-01 14 52474664 52474664 C T NID2 Nonsense_Mutation p.W1248* 0.08 TCGA-E7-A3Y1-01 14 58038711 58038711 G A SLC35F4 Silent p.T314T 0.42 TCGA-E7-A3Y1-01 14 70252943 70252943 A G SLC10A1 Silent p.Y146Y 0.42 TCGA-E7-A3Y1-01 14 94088092 94088092 G A UNC79 Missense_Mutation p.G1328R 0.33 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-E7-A3Y1-01 15 102346616 102346616 G C OR4F6 Missense_Mutation p.G232R 0.32 deleterious_low_confidence(0.03) benign(0.337) TCGA-E7-A3Y1-01 15 45403752 45403752 C T DUOX2 Missense_Mutation p.S182N 0.29 deleterious(0.04) possibly_damaging(0.599) TCGA-E7-A3Y1-01 15 64275760 64275760 G T DAPK2 Missense_Mutation p.R96S 0.37 tolerated(0.14) benign(0.028) TCGA-E7-A3Y1-01 15 72608188 72608188 C T CELF6 Missense_Mutation p.G115R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A3Y1-01 15 75190084 75190084 C G MPI 3'UTR 0.10 TCGA-E7-A3Y1-01 15 79382995 79382995 C G RASGRF1 5'UTR 0.50 TCGA-E7-A3Y1-01 16 17292142 17292142 G A XYLT1 Missense_Mutation p.R406W 0.05 deleterious(0) probably_damaging(0.967) TCGA-E7-A3Y1-01 16 18849753 18849753 G A SMG1 Nonsense_Mutation p.R2374* 0.08 TCGA-E7-A3Y1-01 16 2305696 2305696 G A RNPS1 Silent p.T236T 0.34 TCGA-E7-A3Y1-01 16 28965901 28965901 A T NFATC2IP Missense_Mutation p.D159V 0.36 deleterious(0.01) possibly_damaging(0.901) TCGA-E7-A3Y1-01 16 54319028 54319028 A G IRX3 Silent p.D255D 0.44 TCGA-E7-A3Y1-01 16 55525777 55525777 A G MMP2 Silent p.Q415Q 0.34 TCGA-E7-A3Y1-01 16 75665679 75665679 C T KARS Silent p.T358T 0.38 TCGA-E7-A3Y1-01 16 813678 813678 C G MSLN Missense_Mutation p.P56A 0.54 tolerated(0.48) benign(0.013) TCGA-E7-A3Y1-01 17 3101305 3101305 A G OR1A2 Missense_Mutation p.S165G 0.39 tolerated(0.07) benign(0.013) TCGA-E7-A3Y1-01 17 36486976 36486976 C G GPR179 Missense_Mutation p.G826R 0.37 deleterious(0.01) possibly_damaging(0.736) TCGA-E7-A3Y1-01 17 42254079 42254079 C T ASB16 Intron 0.32 TCGA-E7-A3Y1-01 17 47874209 47874209 G A KAT7 Silent p.V87V 0.09 TCGA-E7-A3Y1-01 17 55183204 55183204 G A AKAP1 Missense_Mutation p.D127N 0.38 tolerated(0.1) benign(0.022) TCGA-E7-A3Y1-01 17 56619289 56619289 G A C17orf47 Silent p.L534L 0.36 TCGA-E7-A3Y1-01 17 73100105 73100105 C T SLC16A5 Silent p.F398F 0.10 TCGA-E7-A3Y1-01 17 80193825 80193825 C G SLC16A3 5'UTR 0.54 TCGA-E7-A3Y1-01 18 47802020 47802020 G - MBD1 Frame_Shift_Del p.R248Afs*74 0.32 TCGA-E7-A3Y1-01 18 55103602 55103602 C A ONECUT2 Silent p.P218P 0.39 TCGA-E7-A3Y1-01 19 10089574 10089574 C T COL5A3 Missense_Mutation p.G986E 0.39 probably_damaging(0.982) TCGA-E7-A3Y1-01 19 10663675 10663675 C T ATG4D Missense_Mutation p.R453W 0.11 tolerated(0.08) possibly_damaging(0.614) TCGA-E7-A3Y1-01 19 1110743 1110743 C A SBNO2 Splice_Site p.X1010_splice 0.37 TCGA-E7-A3Y1-01 19 14273534 14273534 G C LPHN1 Missense_Mutation p.P365R 0.07 deleterious(0.02) possibly_damaging(0.544) TCGA-E7-A3Y1-01 19 15990419 15990419 G A CYP4F2 Missense_Mutation p.P437S 0.31 tolerated(0.06) possibly_damaging(0.86) TCGA-E7-A3Y1-01 19 16035572 16035572 C T CYP4F11 Missense_Mutation p.E216K 0.07 tolerated(0.06) benign(0.05) TCGA-E7-A3Y1-01 19 3905458 3905458 G T ATCAY Nonsense_Mutation p.G55* 0.47 TCGA-E7-A3Y1-01 19 54444722 54444722 A G CACNG7 Splice_Site p.X142_splice 0.07 TCGA-E7-A3Y1-01 19 54782928 54782928 C T LILRB2 Missense_Mutation p.G232S 0.05 tolerated(0.06) probably_damaging(0.951) TCGA-E7-A3Y1-01 19 55816212 55816212 C A BRSK1 Silent p.A547A 0.90 TCGA-E7-A3Y1-01 1 145209299 145209299 C T RP11-458D21.5 5'UTR 0.17 TCGA-E7-A3Y1-01 1 151018593 151018593 C A BNIPL Missense_Mutation p.A330D 0.45 deleterious(0.02) possibly_damaging(0.688) TCGA-E7-A3Y1-01 1 152280711 152280711 G T FLG Silent p.A2217A 0.22 TCGA-E7-A3Y1-01 1 155030474 155030474 G A ADAM15 Missense_Mutation p.G522R 0.26 deleterious(0) probably_damaging(1) TCGA-E7-A3Y1-01 1 158059334 158059334 C T KIRREL Nonsense_Mutation p.Q363* 0.04 TCGA-E7-A3Y1-01 1 161953338 161953338 T A OLFML2B 3'UTR 0.38 TCGA-E7-A3Y1-01 1 16736395 16736395 C T SPATA21 Silent p.E96E 0.79 TCGA-E7-A3Y1-01 1 169511786 169511786 G A F5 Missense_Mutation p.R848C 0.29 tolerated(0.1) benign(0.398) TCGA-E7-A3Y1-01 1 186014962 186014962 C T HMCN1 Silent p.G2149G 0.29 TCGA-E7-A3Y1-01 1 186158668 186158668 C T HMCN1 Silent p.P5522P 0.44 TCGA-E7-A3Y1-01 1 192628536 192628536 T C RGS13 Silent p.F121F 0.64 TCGA-E7-A3Y1-01 1 197128821 197128821 G T ZBTB41 Missense_Mutation p.Q800K 0.30 deleterious(0.04) benign(0.05) TCGA-E7-A3Y1-01 1 216498861 216498861 C T USH2A Missense_Mutation p.R310Q 0.59 probably_damaging(0.997) TCGA-E7-A3Y1-01 1 226784667 226784667 A G C1orf95 Missense_Mutation p.M123V 0.06 deleterious(0.01) benign(0.076) TCGA-E7-A3Y1-01 1 22922604 22922604 G T EPHA8 Missense_Mutation p.C568F 0.42 tolerated(0.23) benign(0.421) TCGA-E7-A3Y1-01 1 237730002 237730002 G A RYR2 Nonsense_Mutation p.W1117* 0.26 TCGA-E7-A3Y1-01 1 248059029 248059029 G A OR2W3 Silent p.L47L 0.04 TCGA-E7-A3Y1-01 1 248113003 248113003 C T OR2L8 Missense_Mutation p.P282S 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-E7-A3Y1-01 1 34209159 34209159 G A CSMD2 Missense_Mutation p.P592L 0.07 deleterious(0) probably_damaging(0.999) TCGA-E7-A3Y1-01 20 23586272 23586272 C T CST9 Nonsense_Mutation p.W77* 0.40 TCGA-E7-A3Y1-01 20 34501269 34501269 G A PHF20 Missense_Mutation p.E554K 0.30 tolerated(0.25) benign(0.002) TCGA-E7-A3Y1-01 21 32575281 32575281 T C TIAM1 Silent p.L812L 0.48 TCGA-E7-A3Y1-01 21 46066461 46066461 C T KRTAP10-11 Missense_Mutation p.P29L 0.43 deleterious(0.01) unknown(0) TCGA-E7-A3Y1-01 21 46077880 46077880 C - KRTAP12-3 5'UTR 0.29 TCGA-E7-A3Y1-01 22 21335037 21335037 C G AIFM3 Missense_Mutation p.L587V 0.09 tolerated(0.13) benign(0.035) TCGA-E7-A3Y1-01 22 29182369 29182369 A G CCDC117 3'UTR 0.24 TCGA-E7-A3Y1-01 22 29750657 29750657 T C AP1B1 Missense_Mutation p.N307S 0.09 deleterious(0.03) benign(0.238) TCGA-E7-A3Y1-01 22 51020239 51020239 C T CHKB Missense_Mutation p.R129Q 0.36 deleterious(0) probably_damaging(0.996) TCGA-E7-A3Y1-01 2 11300786 11300786 G A PQLC3 Missense_Mutation p.G88R 0.33 deleterious(0.03) probably_damaging(0.986) TCGA-E7-A3Y1-01 2 113074110 113074110 G A ZC3H6 Missense_Mutation p.E271K 0.43 deleterious(0) probably_damaging(0.993) TCGA-E7-A3Y1-01 2 132021608 132021608 C T POTEE Silent p.T860T 0.32 TCGA-E7-A3Y1-01 2 152420419 152420419 C - NEB Frame_Shift_Del p.G6166Afs*25 0.24 TCGA-E7-A3Y1-01 2 179449339 179449339 A G TTN Intron 0.42 TCGA-E7-A3Y1-01 2 179594909 179594909 G T TTN Missense_Mutation p.A6073E 0.08 TCGA-E7-A3Y1-01 2 197781295 197781295 T - PGAP1 Frame_Shift_Del p.R110Efs*17 0.34 TCGA-E7-A3Y1-01 2 227906897 227906897 C - COL4A4 Frame_Shift_Del p.D1158Ifs*10 0.25 TCGA-E7-A3Y1-01 2 228860382 228860382 C T SPHKAP Missense_Mutation p.E1493K 0.33 tolerated(0.21) benign(0.051) TCGA-E7-A3Y1-01 2 238287358 238287358 T C COL6A3 Silent p.P806P 0.38 TCGA-E7-A3Y1-01 2 63380641 63380641 C T WDPCP Missense_Mutation p.C716Y 0.44 tolerated(1) benign(0.044) TCGA-E7-A3Y1-01 2 68384826 68384826 A C WDR92 5'Flank 0.38 TCGA-E7-A3Y1-01 2 71357850 71357850 G T MPHOSPH10 Missense_Mutation p.G19C 0.48 deleterious(0.01) possibly_damaging(0.882) TCGA-E7-A3Y1-01 2 97035169 97035169 C T NCAPH Silent p.P699P 0.34 TCGA-E7-A3Y1-01 3 10157344 10157344 G A BRK1 5'UTR 0.52 TCGA-E7-A3Y1-01 3 113667649 113667649 C G ZDHHC23 5'UTR 0.58 TCGA-E7-A3Y1-01 3 159986285 159986285 A T IFT80 Missense_Mutation p.D713E 0.13 tolerated(0.1) possibly_damaging(0.904) TCGA-E7-A3Y1-01 3 38888718 38888718 C T SCN11A Missense_Mutation p.E1615K 0.08 deleterious(0.02) benign(0.309) TCGA-E7-A3Y1-01 3 38926797 38926797 C G SCN11A Missense_Mutation p.E1016Q 0.09 deleterious(0.01) possibly_damaging(0.832) TCGA-E7-A3Y1-01 3 51929352 51929352 G T IQCF1 Missense_Mutation p.P58T 0.40 tolerated(0.37) benign(0.006) TCGA-E7-A3Y1-01 3 52857966 52857966 C A ITIH4 Missense_Mutation p.R409L 0.31 deleterious(0) possibly_damaging(0.462) TCGA-E7-A3Y1-01 3 58186750 58186750 C T DNASE1L3 Missense_Mutation p.D174N 0.37 tolerated(0.1) probably_damaging(0.967) TCGA-E7-A3Y1-01 3 68802170 68802170 C T FAM19A4 Splice_Site p.X44_splice 0.33 TCGA-E7-A3Y1-01 3 69168084 69168084 C T LMOD3 Silent p.Q474Q 0.05 TCGA-E7-A3Y1-01 4 111781801 111781801 A G MIR297 RNA 0.36 TCGA-E7-A3Y1-01 4 122723018 122723018 A T EXOSC9 Missense_Mutation p.I35F 0.39 deleterious(0) possibly_damaging(0.599) TCGA-E7-A3Y1-01 4 126241857 126241857 G C FAT4 Missense_Mutation p.E1431Q 0.07 probably_damaging(0.922) TCGA-E7-A3Y1-01 4 175896928 175896928 A T ADAM29 Silent p.T84T 0.34 TCGA-E7-A3Y1-01 4 1806088 1806088 G T FGFR3 Silent p.A371A 0.38 TCGA-E7-A3Y1-01 4 1806089 1806089 G T FGFR3 Missense_Mutation p.G372C 0.38 tolerated(0.07) benign(0.029) TCGA-E7-A3Y1-01 4 187455151 187455151 T C MTNR1A Missense_Mutation p.I249V 0.31 tolerated(1) benign(0.008) TCGA-E7-A3Y1-01 4 2252898 2252898 G A MXD4 Missense_Mutation p.R129C 0.44 deleterious(0) probably_damaging(0.978) TCGA-E7-A3Y1-01 4 42545975 42545975 G A ATP8A1 Missense_Mutation p.R561C 0.35 deleterious(0) probably_damaging(0.98) TCGA-E7-A3Y1-01 4 52862253 52862253 C T LRRC66 Missense_Mutation p.R312H 0.43 tolerated(0.75) benign(0) TCGA-E7-A3Y1-01 4 65146799 65146799 T C TECRL Silent p.G308G 0.46 TCGA-E7-A3Y1-01 4 65170940 65170940 C A TECRL Missense_Mutation p.W225L 0.05 deleterious(0) probably_damaging(0.96) TCGA-E7-A3Y1-01 5 126732390 126732390 G A MEGF10 Silent p.Q193Q 0.40 TCGA-E7-A3Y1-01 5 131006321 131006321 T C FNIP1 Silent p.S981S 0.42 TCGA-E7-A3Y1-01 5 13766144 13766144 G A DNAH5 Missense_Mutation p.P3348S 0.05 benign(0.015) TCGA-E7-A3Y1-01 5 140175218 140175218 G A PCDHA2 Silent p.T223T 0.47 TCGA-E7-A3Y1-01 5 140573927 140573927 G A PCDHB10 Nonsense_Mutation p.W601* 0.34 TCGA-E7-A3Y1-01 5 140725934 140725934 G A PCDHGA3 Silent p.T778T 0.06 TCGA-E7-A3Y1-01 5 140740651 140740651 C G PCDHGB2 Missense_Mutation p.L317V 0.10 tolerated(0.11) benign(0.271) TCGA-E7-A3Y1-01 5 141694316 141694316 C A SPRY4 Missense_Mutation p.V143L 0.37 tolerated(0.41) benign(0.034) TCGA-E7-A3Y1-01 5 150075243 150075243 C T RBM22 Missense_Mutation p.D191N 0.14 tolerated(0.16) probably_damaging(0.994) TCGA-E7-A3Y1-01 5 159835026 159835026 C A SLU7 Missense_Mutation p.R290I 0.36 deleterious(0) probably_damaging(0.999) TCGA-E7-A3Y1-01 5 161300200 161300200 C T GABRA1 Silent p.L111L 0.04 TCGA-E7-A3Y1-01 5 32786414 32786414 G A NPR3 Missense_Mutation p.R530Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-E7-A3Y1-01 5 33576479 33576479 C G ADAMTS12 Missense_Mutation p.E1218Q 0.06 tolerated(0.29) benign(0.007) TCGA-E7-A3Y1-01 5 33576554 33576554 C G ADAMTS12 Missense_Mutation p.E1193Q 0.11 tolerated(0.29) benign(0.005) TCGA-E7-A3Y1-01 5 33881544 33881544 G T ADAMTS12 Missense_Mutation p.P57T 0.05 deleterious(0) probably_damaging(1) TCGA-E7-A3Y1-01 5 50074470 50074470 A G PARP8 Missense_Mutation p.Y219C 0.15 deleterious(0) probably_damaging(0.984) TCGA-E7-A3Y1-01 5 55422846 55422846 A G ANKRD55 Missense_Mutation p.C234R 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A3Y1-01 5 64447760 64447760 A G ADAMTS6 Missense_Mutation p.V1086A 0.34 tolerated(0.09) possibly_damaging(0.819) TCGA-E7-A3Y1-01 5 74880637 74880637 T C POLK Missense_Mutation p.I371T 0.39 tolerated(0.38) benign(0.003) TCGA-E7-A3Y1-01 5 94207113 94207113 T - MCTP1 Frame_Shift_Del p.D683Ifs*8 0.24 TCGA-E7-A3Y1-01 5 98232075 98232075 T C CHD1 Missense_Mutation p.Y522C 0.07 deleterious(0.02) possibly_damaging(0.684) TCGA-E7-A3Y1-01 6 111636553 111636553 C G REV3L Missense_Mutation p.E2795Q 0.33 deleterious(0.05) probably_damaging(1) TCGA-E7-A3Y1-01 6 11190347 11190347 C T NEDD9 Silent p.Q585Q 0.33 TCGA-E7-A3Y1-01 6 144863938 144863938 G A UTRN Missense_Mutation p.R2176K 0.46 tolerated(0.4) benign(0.01) TCGA-E7-A3Y1-01 6 24850033 24850033 C T FAM65B Nonsense_Mutation p.W315* 0.06 TCGA-E7-A3Y1-01 6 26056507 26056507 G A HIST1H1C Silent p.A50A 0.38 TCGA-E7-A3Y1-01 6 26377480 26377480 C G BTN3A2 3'UTR 0.39 TCGA-E7-A3Y1-01 6 26598817 26598817 G A ABT1 Missense_Mutation p.G255R 0.39 tolerated(0.06) possibly_damaging(0.547) TCGA-E7-A3Y1-01 6 29589570 29589570 C T GABBR1 Missense_Mutation p.G364R 0.44 deleterious(0) probably_damaging(0.989) TCGA-E7-A3Y1-01 6 31107475 31107475 G A PSORS1C1 Silent p.Q75Q 0.50 TCGA-E7-A3Y1-01 6 31696843 31696843 G A DDAH2 Silent p.G32G 0.43 TCGA-E7-A3Y1-01 6 31750569 31750569 G A VARS Missense_Mutation p.R606W 0.06 deleterious(0) probably_damaging(1) TCGA-E7-A3Y1-01 6 38810224 38810224 T - DNAH8 Frame_Shift_Del p.W1300Gfs*4 0.22 TCGA-E7-A3Y1-01 6 42236492 42236492 C - TRERF1 Frame_Shift_Del p.Q280Nfs*53 0.30 TCGA-E7-A3Y1-01 6 56479254 56479254 T G DST Missense_Mutation p.H1116P 0.32 probably_damaging(0.936) TCGA-E7-A3Y1-01 6 62442653 62442653 T C KHDRBS2 Missense_Mutation p.Y276C 0.38 deleterious(0.02) possibly_damaging(0.87) TCGA-E7-A3Y1-01 6 73919784 73919784 T C RP11-257K9.8 3'UTR 0.31 TCGA-E7-A3Y1-01 6 74473393 74473393 C G CD109 Silent p.L364L 0.35 TCGA-E7-A3Y1-01 6 88376826 88376826 A T ORC3 Silent p.T708T 0.41 TCGA-E7-A3Y1-01 7 106509636 106509636 C T PIK3CG Nonsense_Mutation p.R544* 0.39 TCGA-E7-A3Y1-01 7 139416296 139416296 T A HIPK2 Missense_Mutation p.S180C 0.44 deleterious(0) possibly_damaging(0.765) TCGA-E7-A3Y1-01 7 141427282 141427282 C T WEE2 Intron 0.43 TCGA-E7-A3Y1-01 7 150761698 150761698 C - SLC4A2 Frame_Shift_Del p.P102Qfs*143 0.35 TCGA-E7-A3Y1-01 7 151877847 151877847 A - KMT2C Frame_Shift_Del p.D2366Efs*6 0.37 TCGA-E7-A3Y1-01 7 158528300 158528300 C T ESYT2 Splice_Site p.X827_splice 0.43 TCGA-E7-A3Y1-01 7 17843094 17843094 A G SNX13 Missense_Mutation p.M725T 0.45 deleterious(0.01) benign(0.098) TCGA-E7-A3Y1-01 7 21721207 21721207 T C DNAH11 Missense_Mutation p.L1796P 0.31 probably_damaging(0.997) TCGA-E7-A3Y1-01 7 72298716 72298716 G T TYW1B 5'UTR 0.36 TCGA-E7-A3Y1-01 8 10623339 10623339 C T PINX1 Missense_Mutation p.A187T 0.48 deleterious(0.03) probably_damaging(0.971) TCGA-E7-A3Y1-01 8 125113410 125113410 C A FER1L6 Missense_Mutation p.N1652K 0.34 deleterious(0) probably_damaging(1) TCGA-E7-A3Y1-01 8 139606409 139606409 G A COL22A1 Missense_Mutation p.P1489L 0.44 unknown(0) TCGA-E7-A3Y1-01 8 142151356 142151356 G A DENND3 Missense_Mutation p.V106M 0.09 tolerated(0.06) possibly_damaging(0.627) TCGA-E7-A3Y1-01 8 143399942 143399942 A G TSNARE1 Missense_Mutation p.V316A 0.33 deleterious(0.03) benign(0.114) TCGA-E7-A3Y1-01 8 143599522 143599522 G A BAI1 Silent p.P947P 0.37 TCGA-E7-A3Y1-01 8 72965117 72965117 T G RP11-383H13.1 3'UTR 0.35 TCGA-E7-A3Y1-01 8 87951882 87951882 A T CNBD1 Missense_Mutation p.I111L 0.36 deleterious(0.01) benign(0.053) TCGA-E7-A3Y1-01 9 119065048 119065048 G A PAPPA Missense_Mutation p.R989Q 0.27 tolerated(0.16) benign(0.238) TCGA-E7-A3Y1-01 9 130536733 130536733 G C SH2D3C Missense_Mutation p.F17L 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-E7-A3Y1-01 9 137779298 137779298 T C FCN2 3'UTR 0.34 TCGA-E7-A3Y1-01 9 139395013 139395029 ACCTTGTGCGTCGGCAG GCAC NOTCH1 Frame_Shift_Del p.S1970Cfs*7 0.36 TCGA-E7-A3Y1-01 9 139395029 139395029 G C NOTCH1 Missense_Mutation p.S1970C 0.26 deleterious(0) possibly_damaging(0.809) TCGA-E7-A3Y1-01 9 139399556 139399556 G A NOTCH1 Silent p.N1529N 0.46 TCGA-E7-A3Y1-01 9 139872040 139872040 C T PTGDS Missense_Mutation p.H4Y 0.09 tolerated_low_confidence(1) benign(0.016) TCGA-E7-A3Y1-01 9 97365704 97365704 G T FBP1 Missense_Mutation p.L326I 0.47 tolerated(0.06) benign(0.003) TCGA-E7-A3Y1-01 9 98240410 98240410 G A PTCH1 Missense_Mutation p.T425M 0.27 deleterious(0) possibly_damaging(0.874) TCGA-E7-A3Y1-01 X 123196751 123196751 G A STAG2 Splice_Site p.X547_splice 0.79 TCGA-E7-A3Y1-01 X 15552335 15552335 T A BMX Missense_Mutation p.N340K 0.22 tolerated(0.48) benign(0.006) TCGA-E7-A3Y1-01 X 21675187 21675187 A G KLHL34 Silent p.S240S 0.20 TCGA-E7-A3Y1-01 X 224136 224136 G T GTPBP6 Silent p.R211R 0.28 TCGA-E7-A3Y1-01 X 24024257 24024257 T C KLHL15 Missense_Mutation p.D185G 0.83 tolerated(0.19) benign(0.138) TCGA-E7-A3Y1-01 X 41205816 41205818 CAA - DDX3X In_Frame_Del p.P519_S520delinsR 0.11 TCGA-E7-A3Y1-01 X 54776306 54776306 T A ITIH6 3'UTR 0.90 TCGA-E7-A3Y1-01 X 99661761 99661762 - G PCDH19 Frame_Shift_Ins p.R612Pfs*5 0.51 TCGA-E7-A4IJ-01 10 101604195 101604195 C T ABCC2 Silent p.I1320I 0.28 TCGA-E7-A4IJ-01 10 107022191 107022191 C T SORCS3 Silent p.L1182L 0.31 TCGA-E7-A4IJ-01 10 108469046 108469046 G A SORCS1 Nonsense_Mutation p.Q360* 0.14 TCGA-E7-A4IJ-01 10 117856175 117856175 C A GFRA1 Missense_Mutation p.G291W 0.25 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 10 124708315 124708315 C T C10orf88 Missense_Mutation p.M166I 0.15 deleterious(0.03) benign(0.052) TCGA-E7-A4IJ-01 10 127697960 127697960 G A FANK1 Missense_Mutation p.E331K 0.35 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-E7-A4IJ-01 10 129845659 129845659 C G PTPRE Missense_Mutation p.P39A 0.50 tolerated_low_confidence(0.05) benign(0.006) TCGA-E7-A4IJ-01 10 18789796 18789796 G A CACNB2 Missense_Mutation p.G171E 0.19 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 10 22048151 22048151 C A DNAJC1 Missense_Mutation p.G515V 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 10 25312524 25312524 A T THNSL1 Silent p.A124A 0.32 TCGA-E7-A4IJ-01 10 29812498 29812498 C T SVIL Silent p.P1015P 0.41 TCGA-E7-A4IJ-01 10 31810098 31810098 C T ZEB1 Missense_Mutation p.S613L 0.36 tolerated(0.47) benign(0.314) TCGA-E7-A4IJ-01 10 45799096 45799096 A T OR13A1 Missense_Mutation p.C259S 0.04 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 10 4889710 4889710 C A AKR1E2 Missense_Mutation p.H317Q 0.22 tolerated(0.07) benign(0.164) TCGA-E7-A4IJ-01 10 49392913 49392913 T G FRMPD2 Missense_Mutation p.N791H 0.14 tolerated(0.54) possibly_damaging(0.89) TCGA-E7-A4IJ-01 10 67829157 67829157 C G CTNNA3 Missense_Mutation p.E690Q 0.17 deleterious(0.04) unknown(0) TCGA-E7-A4IJ-01 10 79781643 79781643 G A POLR3A Silent p.F341F 0.13 TCGA-E7-A4IJ-01 10 79784793 79784793 C T POLR3A Silent p.L142L 0.43 TCGA-E7-A4IJ-01 10 81070880 81070880 C G ZMIZ1 Nonsense_Mutation p.S1012* 0.28 TCGA-E7-A4IJ-01 10 85933592 85933592 A T C10orf99 5'UTR 0.19 TCGA-E7-A4IJ-01 10 91514296 91514296 G T KIF20B Missense_Mutation p.A1417S 0.45 tolerated(0.4) benign(0.039) TCGA-E7-A4IJ-01 10 95422892 95422892 C T PDE6C Silent p.V825V 0.45 TCGA-E7-A4IJ-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.30 TCGA-E7-A4IJ-01 10 98802704 98802704 C G SLIT1 Missense_Mutation p.Q706H 0.29 deleterious(0) probably_damaging(0.917) TCGA-E7-A4IJ-01 11 106888799 106888799 A T GUCY1A2 5'UTR 0.69 TCGA-E7-A4IJ-01 11 116633598 116633598 G A BUD13 Missense_Mutation p.S236L 0.67 tolerated(0.13) benign(0.013) TCGA-E7-A4IJ-01 11 124252330 124252330 G C OR8B2 Missense_Mutation p.L304V 0.58 deleterious_low_confidence(0.03) benign(0.002) TCGA-E7-A4IJ-01 11 125448125 125448125 G A EI24 Missense_Mutation p.S138N 0.62 deleterious(0) probably_damaging(0.998) TCGA-E7-A4IJ-01 11 125769995 125769995 G C HYLS1 Missense_Mutation p.Q244H 0.29 deleterious(0.01) benign(0.045) TCGA-E7-A4IJ-01 11 130777856 130777856 C A SNX19 Missense_Mutation p.K719N 0.13 deleterious(0) probably_damaging(0.969) TCGA-E7-A4IJ-01 11 27679307 27679307 G T BDNF 3'UTR 0.24 TCGA-E7-A4IJ-01 11 4388619 4388619 C A OR52B4 Nonsense_Mutation p.E303* 0.12 TCGA-E7-A4IJ-01 11 56468635 56468635 T C OR9G1 Missense_Mutation p.Y258H 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-E7-A4IJ-01 11 59271379 59271379 G C OR4D11 Missense_Mutation p.D111H 0.32 deleterious(0.01) probably_damaging(1) TCGA-E7-A4IJ-01 11 61036431 61036431 G C VWCE Missense_Mutation p.I615M 0.14 deleterious(0.01) possibly_damaging(0.867) TCGA-E7-A4IJ-01 11 61665787 61665787 G A RAB3IL1 Missense_Mutation p.S371L 0.62 deleterious(0.01) possibly_damaging(0.655) TCGA-E7-A4IJ-01 11 62295310 62295310 C G AHNAK Missense_Mutation p.L2193F 0.20 probably_damaging(0.999) TCGA-E7-A4IJ-01 11 63069887 63069887 G A SLC22A10 Missense_Mutation p.G386E 0.67 deleterious(0) probably_damaging(0.994) TCGA-E7-A4IJ-01 11 64846548 64846548 G A CDCA5 3'UTR 0.45 TCGA-E7-A4IJ-01 11 66100202 66100202 G C RIN1 Missense_Mutation p.Q633E 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-E7-A4IJ-01 11 66261098 66261098 C A DPP3 Missense_Mutation p.F461L 0.79 tolerated(0.21) benign(0.177) TCGA-E7-A4IJ-01 11 6891294 6891294 T A OR10A2 Silent p.A103A 0.15 TCGA-E7-A4IJ-01 11 7064875 7064875 C T NLRP14 Nonsense_Mutation p.R540* 0.82 TCGA-E7-A4IJ-01 11 93170884 93170884 G A CCDC67 Silent p.%3D 0.68 TCGA-E7-A4IJ-01 11 94801254 94801254 G T SRSF8 3'UTR 0.33 TCGA-E7-A4IJ-01 11 94801255 94801255 G C SRSF8 3'UTR 0.33 TCGA-E7-A4IJ-01 12 108620796 108620796 C T WSCD2 Silent p.T278T 0.11 TCGA-E7-A4IJ-01 12 11461478 11461478 G C PRB4 Missense_Mutation p.Q147E 0.06 deleterious_low_confidence(0.04) unknown(0) TCGA-E7-A4IJ-01 12 119588914 119588914 C T SRRM4 Missense_Mutation p.S390F 0.14 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-E7-A4IJ-01 12 122825998 122825998 G T CLIP1 Missense_Mutation p.Q585K 0.16 deleterious(0.04) possibly_damaging(0.519) TCGA-E7-A4IJ-01 12 124171451 124171451 C G TCTN2 Silent p.V211V 0.10 TCGA-E7-A4IJ-01 12 124221774 124221774 G A ATP6V0A2 Missense_Mutation p.E332K 0.18 deleterious(0) benign(0.254) TCGA-E7-A4IJ-01 12 130927066 130927066 C T RIMBP2 Silent p.E260E 0.08 TCGA-E7-A4IJ-01 12 132402081 132402081 C T ULK1 Missense_Mutation p.R770C 0.29 deleterious(0.05) possibly_damaging(0.77) TCGA-E7-A4IJ-01 12 26714774 26714774 G C ITPR2 Nonsense_Mutation p.S1581* 0.21 TCGA-E7-A4IJ-01 12 47160509 47160509 T A SLC38A4 Missense_Mutation p.D540V 0.17 deleterious(0) benign(0.009) TCGA-E7-A4IJ-01 12 48250914 48250914 G C VDR Nonsense_Mutation p.S244* 0.23 TCGA-E7-A4IJ-01 12 4830023 4830023 C G GALNT8 Silent p.L60L 0.43 TCGA-E7-A4IJ-01 12 50027715 50027715 C A PRPF40B Missense_Mutation p.Q218K 0.13 tolerated(0.92) benign(0.06) TCGA-E7-A4IJ-01 12 50047556 50047556 C G FMNL3 Missense_Mutation p.K391N 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-E7-A4IJ-01 12 50189721 50189721 G A NCKAP5L Missense_Mutation p.S641L 0.58 deleterious(0.01) possibly_damaging(0.794) TCGA-E7-A4IJ-01 12 50190310 50190310 G C NCKAP5L Missense_Mutation p.Q445E 0.52 deleterious(0.04) possibly_damaging(0.798) TCGA-E7-A4IJ-01 12 50191000 50191000 G C NCKAP5L Missense_Mutation p.P215A 0.53 tolerated(0.56) benign(0.011) TCGA-E7-A4IJ-01 12 50197848 50197848 G A NCKAP5L 5'UTR 0.51 TCGA-E7-A4IJ-01 12 50480127 50480128 - ACA SMARCD1 In_Frame_Ins p.N122dup 0.16 TCGA-E7-A4IJ-01 12 52943969 52943969 T C KRT71 Missense_Mutation p.Q167R 0.55 deleterious(0) probably_damaging(0.997) TCGA-E7-A4IJ-01 12 53227682 53227682 C T KRT79 Silent p.Q121Q 0.57 TCGA-E7-A4IJ-01 12 55420218 55420218 C G NEUROD4 5'UTR 0.47 TCGA-E7-A4IJ-01 12 56482537 56482537 G A ERBB3 Missense_Mutation p.E332K 0.54 tolerated(0.15) possibly_damaging(0.67) TCGA-E7-A4IJ-01 12 56868392 56868392 C T GLS2 Missense_Mutation p.R387H 0.08 deleterious(0) probably_damaging(0.973) TCGA-E7-A4IJ-01 12 5708736 5708736 G C ANO2 Missense_Mutation p.S716C 0.21 deleterious(0.02) possibly_damaging(0.627) TCGA-E7-A4IJ-01 12 57849552 57849552 G A INHBE Missense_Mutation p.R78K 0.54 tolerated(0.53) benign(0.046) TCGA-E7-A4IJ-01 12 63991612 63991612 C T DPY19L2 Missense_Mutation p.E480K 0.10 deleterious(0) probably_damaging(0.994) TCGA-E7-A4IJ-01 12 7086832 7086832 G A LPCAT3 Silent p.L372L 0.41 TCGA-E7-A4IJ-01 12 75728517 75728517 G A GLIPR1L1 Silent p.L3L 0.48 TCGA-E7-A4IJ-01 12 78582407 78582407 G C NAV3 Missense_Mutation p.D1947H 0.46 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 12 80665430 80665430 C T OTOGL Missense_Mutation p.H832Y 0.50 tolerated(0.14) possibly_damaging(0.689) TCGA-E7-A4IJ-01 12 88380096 88380096 C T C12orf50 Missense_Mutation p.M305I 0.17 tolerated(0.35) benign(0.006) TCGA-E7-A4IJ-01 12 8926243 8926243 G C RIMKLB Missense_Mutation p.D342H 0.23 tolerated_low_confidence(0.51) benign(0.168) TCGA-E7-A4IJ-01 13 110437768 110437768 C G IRS2 Missense_Mutation p.K211N 0.36 deleterious(0) probably_damaging(0.979) TCGA-E7-A4IJ-01 13 111156572 111156572 G A COL4A2 Missense_Mutation p.E1455K 0.22 unknown(0) TCGA-E7-A4IJ-01 13 25448388 25448388 G T RNF17 Splice_Site p.X1528_splice 0.20 TCGA-E7-A4IJ-01 14 101454556 101454556 T C SNORD114-27 RNA 0.13 TCGA-E7-A4IJ-01 14 106878026 106878026 C T IGHV4-39 Silent p.L17L 0.46 TCGA-E7-A4IJ-01 14 22600733 22600733 C T TRAV8-7 Silent p.G26G 0.32 TCGA-E7-A4IJ-01 14 24884118 24884118 G C NYNRIN Missense_Mutation p.D1055H 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-E7-A4IJ-01 14 38724135 38724135 C T CLEC14A Missense_Mutation p.E365K 0.33 tolerated(1) benign(0.003) TCGA-E7-A4IJ-01 14 51094844 51094844 G T ATL1 Silent p.V405V 0.78 TCGA-E7-A4IJ-01 14 76548637 76548637 G T IFT43 Splice_Site p.X104_splice 0.69 TCGA-E7-A4IJ-01 15 101718339 101718339 C G CHSY1 Missense_Mutation p.E555Q 0.22 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 15 20658946 20658946 A C HERC2P3 RNA 0.24 TCGA-E7-A4IJ-01 15 28375377 28375377 C G HERC2 Missense_Mutation p.G4245A 0.19 benign(0.052) TCGA-E7-A4IJ-01 15 40675213 40675213 G A KNSTRN Silent p.E59E 0.16 TCGA-E7-A4IJ-01 15 45968409 45968409 C A SQRDL Silent p.L255L 0.13 TCGA-E7-A4IJ-01 15 52356167 52356167 A T MAPK6 Missense_Mutation p.Q379L 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-E7-A4IJ-01 15 54307456 54307456 G C UNC13C Missense_Mutation p.D786H 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 15 65917308 65917308 G T SLC24A1 Missense_Mutation p.G297V 0.12 benign(0) TCGA-E7-A4IJ-01 15 69329383 69329383 C T NOX5 Missense_Mutation p.H402Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 15 72549769 72549769 T C PARP6 Missense_Mutation p.T307A 0.08 tolerated(0.13) benign(0.083) TCGA-E7-A4IJ-01 15 75650805 75650805 C T MAN2C1 Missense_Mutation p.E818K 0.07 tolerated(0.34) benign(0.004) TCGA-E7-A4IJ-01 15 79058074 79058074 C T ADAMTS7 Silent p.P1393P 0.48 TCGA-E7-A4IJ-01 15 83876122 83876122 G C HDGFRP3 Silent p.V15V 0.75 TCGA-E7-A4IJ-01 16 1394662 1394662 C A BAIAP3 Missense_Mutation p.Q609K 0.10 deleterious(0.02) benign(0.097) TCGA-E7-A4IJ-01 16 15168715 15168715 C T RRN3 Missense_Mutation p.E288K 0.19 tolerated(0.07) possibly_damaging(0.476) TCGA-E7-A4IJ-01 16 19078950 19078950 C G COQ7 5'UTR 0.41 TCGA-E7-A4IJ-01 16 20352498 20352498 G A UMOD Nonsense_Mutation p.R498* 0.16 TCGA-E7-A4IJ-01 16 27246561 27246561 A T NSMCE1 Missense_Mutation p.S66T 0.15 deleterious(0.01) benign(0.123) TCGA-E7-A4IJ-01 16 27761480 27761480 C A KIAA0556 Missense_Mutation p.P1067T 0.35 deleterious(0.02) probably_damaging(0.983) TCGA-E7-A4IJ-01 16 28855329 28855329 C T TUFM Missense_Mutation p.R339Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-E7-A4IJ-01 16 30127954 30127954 C T MAPK3 Intron 0.47 TCGA-E7-A4IJ-01 16 30596527 30596527 C T ZNF785 Missense_Mutation p.E84K 0.45 tolerated(0.15) possibly_damaging(0.636) TCGA-E7-A4IJ-01 16 30615726 30615726 C G ZNF689 Missense_Mutation p.E454D 0.33 deleterious(0.01) probably_damaging(0.93) TCGA-E7-A4IJ-01 16 30615768 30615768 C G ZNF689 Missense_Mutation p.Q440H 0.35 tolerated(0.06) benign(0.057) TCGA-E7-A4IJ-01 16 30900097 30900097 C G BCL7C Intron 0.23 TCGA-E7-A4IJ-01 16 30939803 30939803 G C FBXL19 Missense_Mutation p.E235Q 0.52 deleterious(0.01) possibly_damaging(0.838) TCGA-E7-A4IJ-01 16 4733904 4733904 G A MGRN1 Missense_Mutation p.R530Q 0.28 tolerated_low_confidence(0.51) benign(0.06) TCGA-E7-A4IJ-01 16 4920549 4920549 C G UBN1 Silent p.L448L 0.14 TCGA-E7-A4IJ-01 16 57188150 57188150 G A FAM192A 3'UTR 0.75 TCGA-E7-A4IJ-01 16 70055765 70055765 C G PDXDC2P RNA 0.52 TCGA-E7-A4IJ-01 16 70504275 70504275 C G FUK Silent p.L338L 0.52 TCGA-E7-A4IJ-01 16 72831018 72831018 G C ZFHX3 Missense_Mutation p.Q1855E 0.13 benign(0.11) TCGA-E7-A4IJ-01 16 7703923 7703923 C A RBFOX1 Silent p.P308P 0.28 TCGA-E7-A4IJ-01 16 81232541 81232541 G T PKD1L2 Missense_Mutation p.H423Q 0.67 deleterious(0.01) possibly_damaging(0.793) TCGA-E7-A4IJ-01 16 84209813 84209813 A G DNAAF1 Missense_Mutation p.Q658R 0.24 tolerated(0.12) benign(0.305) TCGA-E7-A4IJ-01 16 84215839 84215839 G C TAF1C Silent p.V230V 0.65 TCGA-E7-A4IJ-01 17 16699390 16699390 C T CCDC144A 3'UTR 0.16 TCGA-E7-A4IJ-01 17 18059590 18059590 C T MYO15A Silent p.F2847F 0.71 TCGA-E7-A4IJ-01 17 18156960 18156960 G C FLII Silent p.L251L 0.66 TCGA-E7-A4IJ-01 17 27287864 27287864 G A SEZ6 Silent p.H456H 0.38 TCGA-E7-A4IJ-01 17 27977760 27977760 C G SSH2 Missense_Mutation p.E353Q 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-E7-A4IJ-01 17 33768627 33768627 C A SLFN13 Missense_Mutation p.R626I 0.21 deleterious(0.02) possibly_damaging(0.748) TCGA-E7-A4IJ-01 17 34862865 34862865 G A MYO19 Silent p.F527F 0.23 TCGA-E7-A4IJ-01 17 37343762 37343762 G C CACNB1 Missense_Mutation p.F128L 0.31 deleterious(0) benign(0.098) TCGA-E7-A4IJ-01 17 37565285 37565285 G A MED1 Silent p.I1063I 0.39 TCGA-E7-A4IJ-01 17 38296863 38296863 C T CASC3 Missense_Mutation p.S21L 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-E7-A4IJ-01 17 40275183 40275183 G A HSPB9 Missense_Mutation p.M105I 0.09 tolerated(0.1) benign(0.011) TCGA-E7-A4IJ-01 17 41926218 41926218 G C CD300LG Silent p.R112R 0.38 TCGA-E7-A4IJ-01 17 42082124 42082124 G C NAGS Silent p.L31L 0.36 TCGA-E7-A4IJ-01 17 44249509 44249509 T C KANSL1 Translation_Start_Site p.M1? 0.19 deleterious(0) unknown(0) TCGA-E7-A4IJ-01 17 45727766 45727766 G C KPNB1 Missense_Mutation p.E19Q 0.25 tolerated(0.57) benign(0.014) TCGA-E7-A4IJ-01 17 45925060 45925060 C T SP6 Missense_Mutation p.D246N 0.29 tolerated(0.1) possibly_damaging(0.773) TCGA-E7-A4IJ-01 17 4800081 4800081 C G MINK1 Silent p.L1296L 0.15 TCGA-E7-A4IJ-01 17 63133669 63133669 G T RGS9 Missense_Mutation p.R4L 0.09 deleterious(0.04) benign(0.004) TCGA-E7-A4IJ-01 17 64128821 64128821 T C CEP112 Silent p.R177R 0.12 TCGA-E7-A4IJ-01 17 66864298 66864298 C T ABCA8 Silent p.Q1558Q 0.26 TCGA-E7-A4IJ-01 17 71202315 71202315 C G COG1 Missense_Mutation p.L845V 0.26 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 17 7385757 7385766 CAGGGTCTCA - SLC35G6 Frame_Shift_Del p.Q152Vfs*13 0.57 TCGA-E7-A4IJ-01 17 76430220 76430220 C G DNAH17 Missense_Mutation p.E4033Q 0.34 probably_damaging(0.994) TCGA-E7-A4IJ-01 17 77040004 77040004 C T C1QTNF1 Intron 0.13 TCGA-E7-A4IJ-01 17 78317800 78317800 G T RNF213 Missense_Mutation p.R2109S 0.38 benign(0.164) TCGA-E7-A4IJ-01 17 79674001 79674001 G A SLC25A10 Silent p.A137A 0.10 TCGA-E7-A4IJ-01 18 13069762 13069762 C T CEP192 Missense_Mutation p.S1694L 0.42 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 18 21044225 21044225 C A RIOK3 Missense_Mutation p.S127R 0.53 tolerated(0.12) possibly_damaging(0.806) TCGA-E7-A4IJ-01 18 21479006 21479006 A G LAMA3 Missense_Mutation p.K1938R 0.24 possibly_damaging(0.595) TCGA-E7-A4IJ-01 18 29027853 29027853 T A DSG3 Missense_Mutation p.F5I 0.32 tolerated(0.14) benign(0) TCGA-E7-A4IJ-01 18 30804866 30804866 A G CCDC178 Missense_Mutation p.L564P 0.19 tolerated(0.14) probably_damaging(0.943) TCGA-E7-A4IJ-01 18 33703556 33703556 G A SLC39A6 Missense_Mutation p.L348F 0.19 deleterious(0.01) probably_damaging(1) TCGA-E7-A4IJ-01 18 43329783 43329783 C T SLC14A1 Missense_Mutation p.T402M 0.10 deleterious(0) probably_damaging(0.977) TCGA-E7-A4IJ-01 18 47479629 47479629 C A MYO5B Splice_Site p.X584_splice 0.19 TCGA-E7-A4IJ-01 18 6311598 6311598 C T L3MBTL4 Silent p.K9K 0.34 TCGA-E7-A4IJ-01 18 70532143 70532143 C A NETO1 Missense_Mutation p.Q40H 0.19 tolerated(0.16) benign(0.326) TCGA-E7-A4IJ-01 19 12849348 12849348 C G ASNA1 Missense_Mutation p.S62C 0.39 deleterious(0.01) benign(0.357) TCGA-E7-A4IJ-01 19 13065216 13065216 C T GADD45GIP1 Missense_Mutation p.E159K 0.12 tolerated(0.12) probably_damaging(0.998) TCGA-E7-A4IJ-01 19 14675641 14675641 A C TECR Missense_Mutation p.Y178S 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-E7-A4IJ-01 19 15302808 15302808 C G NOTCH3 Missense_Mutation p.Q214H 0.12 deleterious(0.01) possibly_damaging(0.896) TCGA-E7-A4IJ-01 19 16770914 16770914 C T CTC-429P9.4 Translation_Start_Site p.G1? 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-E7-A4IJ-01 19 17449795 17449795 C T GTPBP3 Silent p.F208F 0.17 TCGA-E7-A4IJ-01 19 17476224 17476224 C A PLVAP Missense_Mutation p.E350D 0.26 deleterious(0.02) benign(0.335) TCGA-E7-A4IJ-01 19 17690356 17690356 C T COLGALT1 Silent p.F444F 0.35 TCGA-E7-A4IJ-01 19 19136462 19136462 T G SUGP2 Missense_Mutation p.Q232P 0.37 tolerated(0.17) benign(0.004) TCGA-E7-A4IJ-01 19 1978612 1978612 C T CSNK1G2 Nonsense_Mutation p.Q104* 0.30 TCGA-E7-A4IJ-01 19 20728173 20728173 T C ZNF737 Missense_Mutation p.H279R 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A4IJ-01 19 21133034 21133034 G C ZNF85 Missense_Mutation p.D572H 0.38 deleterious(0.01) benign(0.02) TCGA-E7-A4IJ-01 19 22156102 22156102 C G ZNF208 Missense_Mutation p.E578D 0.21 tolerated(0.07) benign(0) TCGA-E7-A4IJ-01 19 23542848 23542848 G A ZNF91 Missense_Mutation p.S978F 0.22 tolerated(0.74) probably_damaging(0.991) TCGA-E7-A4IJ-01 19 37975002 37975002 G C ZNF570 Missense_Mutation p.E160Q 0.10 tolerated(0.21) benign(0.001) TCGA-E7-A4IJ-01 19 39070663 39070663 G T RYR1 Missense_Mutation p.L4802F 0.71 possibly_damaging(0.472) TCGA-E7-A4IJ-01 19 42880206 42880206 C T MEGF8 Missense_Mutation p.A2539V 0.09 tolerated(0.13) benign(0.009) TCGA-E7-A4IJ-01 19 4510722 4510722 G A PLIN4 Missense_Mutation p.P1070S 0.26 tolerated(0.33) benign(0.013) TCGA-E7-A4IJ-01 19 45805712 45805712 G T MARK4 Missense_Mutation p.R668L 0.11 tolerated(0.19) benign(0.129) TCGA-E7-A4IJ-01 19 45911714 45911714 C T CD3EAP Missense_Mutation p.S163L 0.72 deleterious(0) probably_damaging(0.966) TCGA-E7-A4IJ-01 19 50086495 50086495 C G PRRG2 Missense_Mutation p.L7V 0.16 tolerated(0.27) benign(0.011) TCGA-E7-A4IJ-01 19 50367621 50367621 G A PNKP Missense_Mutation p.R180C 0.10 deleterious(0) possibly_damaging(0.887) TCGA-E7-A4IJ-01 19 50463852 50463852 C A SIGLEC11 Silent p.V139V 0.76 TCGA-E7-A4IJ-01 19 50865444 50865444 G C NAPSA Silent p.L70L 0.09 TCGA-E7-A4IJ-01 19 53668042 53668042 C A ZNF665 Missense_Mutation p.E567D 0.12 deleterious(0.04) benign(0.171) TCGA-E7-A4IJ-01 19 54416232 54416232 G T CACNG7 Missense_Mutation p.E49D 0.11 tolerated(0.39) benign(0.042) TCGA-E7-A4IJ-01 19 55741989 55741989 T C PPP6R1 Silent p.P878P 0.09 TCGA-E7-A4IJ-01 19 56156574 56156574 G A ZNF581 3'UTR 0.71 TCGA-E7-A4IJ-01 19 56369552 56369552 C T NLRP4 Silent p.L265L 0.11 TCGA-E7-A4IJ-01 19 56407332 56407332 G A NLRP13 Silent p.C1037C 0.76 TCGA-E7-A4IJ-01 19 56600221 56600221 G A ZNF787 Missense_Mutation p.S107L 0.89 deleterious(0) probably_damaging(0.991) TCGA-E7-A4IJ-01 19 56954107 56954107 G A ZNF667 Missense_Mutation p.S86L 0.11 tolerated(0.7) benign(0.001) TCGA-E7-A4IJ-01 19 57058991 57058991 C G ZFP28 Missense_Mutation p.L139V 0.11 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 19 57326356 57326356 C T PEG3 Missense_Mutation p.E1152K 0.05 tolerated(0.06) benign(0.406) TCGA-E7-A4IJ-01 19 58578380 58578380 A G ZNF135 Silent p.P200P 0.11 TCGA-E7-A4IJ-01 19 633453 633453 G T POLRMT Nonsense_Mutation p.C20* 0.43 TCGA-E7-A4IJ-01 19 8553806 8553806 A G HNRNPM 3'UTR 0.40 TCGA-E7-A4IJ-01 19 9017368 9017368 G T MUC16 Missense_Mutation p.D12652E 0.13 benign(0.096) TCGA-E7-A4IJ-01 1 100949903 100949903 C T CDC14A Nonsense_Mutation p.R345* 0.50 TCGA-E7-A4IJ-01 1 109143230 109143230 C T FAM102B Silent p.F60F 0.41 TCGA-E7-A4IJ-01 1 11007860 11007860 C G C1orf127 Missense_Mutation p.E778Q 0.18 tolerated(0.42) benign(0.44) TCGA-E7-A4IJ-01 1 1158733 1158733 G A SDF4 Silent p.H156H 0.10 TCGA-E7-A4IJ-01 1 120438559 120438559 C T ADAM30 Missense_Mutation p.R134Q 0.55 deleterious(0.05) possibly_damaging(0.598) TCGA-E7-A4IJ-01 1 145748572 145748572 C G PDZK1 Missense_Mutation p.L149V 0.14 deleterious(0.02) probably_damaging(0.957) TCGA-E7-A4IJ-01 1 150991007 150991007 G T PRUNE Missense_Mutation p.R66L 0.57 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 1 152383081 152383081 A T CRNN Silent p.T159T 0.33 TCGA-E7-A4IJ-01 1 153930887 153930887 C T CRTC2 Silent p.Q29Q 0.26 TCGA-E7-A4IJ-01 1 155187164 155187164 C G MTX1 3'Flank 0.47 TCGA-E7-A4IJ-01 1 157738478 157738478 A G FCRL2 Silent p.S203S 0.09 TCGA-E7-A4IJ-01 1 158517779 158517779 G T OR6Y1 Silent p.T39T 0.53 TCGA-E7-A4IJ-01 1 161479774 161479774 G T FCGR2A Missense_Mutation p.A177S 0.10 deleterious(0) probably_damaging(0.998) TCGA-E7-A4IJ-01 1 16330856 16330856 G C C1orf64 Missense_Mutation p.E20Q 0.65 tolerated(0.06) benign(0.413) TCGA-E7-A4IJ-01 1 172411242 172411242 G C PIGC Missense_Mutation p.S174C 0.54 deleterious(0.04) probably_damaging(0.997) TCGA-E7-A4IJ-01 1 176526036 176526036 C T PAPPA2 Missense_Mutation p.A193V 0.07 tolerated_low_confidence(0.27) benign(0.003) TCGA-E7-A4IJ-01 1 181767545 181767545 A C CACNA1E Missense_Mutation p.S2173R 0.44 tolerated(0.05) possibly_damaging(0.775) TCGA-E7-A4IJ-01 1 184792383 184792383 C G FAM129A Silent p.L301L 0.17 TCGA-E7-A4IJ-01 1 20097954 20097954 C A TMCO4 Missense_Mutation p.M67I 0.61 tolerated(0.7) benign(0.005) TCGA-E7-A4IJ-01 1 20501688 20501688 G C PLA2G2C Intron 0.19 TCGA-E7-A4IJ-01 1 207867809 207867809 G C CR1L Missense_Mutation p.R192T 0.28 tolerated(0.09) benign(0.314) TCGA-E7-A4IJ-01 1 21103106 21103106 C G HP1BP3 Missense_Mutation p.E112Q 0.33 deleterious(0.01) probably_damaging(0.954) TCGA-E7-A4IJ-01 1 214816648 214816648 T G CENPF Missense_Mutation p.L1656R 0.23 possibly_damaging(0.803) TCGA-E7-A4IJ-01 1 228509806 228509806 C G OBSCN Missense_Mutation p.I6045M 0.65 benign(0.369) TCGA-E7-A4IJ-01 1 24840808 24840808 T C RCAN3 5'UTR 0.14 TCGA-E7-A4IJ-01 1 248813251 248813251 C T OR2T27 Missense_Mutation p.G312E 0.56 tolerated(0.99) benign(0.001) TCGA-E7-A4IJ-01 1 32745472 32745472 C A LCK Silent p.R358R 0.18 TCGA-E7-A4IJ-01 1 38226888 38226888 C T EPHA10 Intron 0.59 TCGA-E7-A4IJ-01 1 40705616 40705616 G C RLF Missense_Mutation p.E1748Q 0.45 tolerated(0.14) benign(0.343) TCGA-E7-A4IJ-01 1 41285618 41285618 C G KCNQ4 Silent p.G302G 0.15 TCGA-E7-A4IJ-01 1 43396306 43396306 G T SLC2A1 Silent p.L169L 0.62 TCGA-E7-A4IJ-01 1 52811739 52811739 A G ZFYVE9 Missense_Mutation p.Y1375C 0.10 deleterious(0.02) benign(0.248) TCGA-E7-A4IJ-01 1 53072500 53072500 G C GPX7 Missense_Mutation p.D95H 0.15 tolerated(0.19) probably_damaging(0.916) TCGA-E7-A4IJ-01 1 60520969 60520969 C A C1orf87 Silent p.V83V 0.07 TCGA-E7-A4IJ-01 1 70504646 70504646 A T LRRC7 Missense_Mutation p.T1009S 0.15 tolerated(0.4) benign(0.001) TCGA-E7-A4IJ-01 1 75072309 75072309 C G C1orf173 Missense_Mutation p.D489H 0.07 deleterious(0.01) benign(0.355) TCGA-E7-A4IJ-01 1 79116310 79116310 C A IFI44 Missense_Mutation p.Q144K 0.73 tolerated(0.82) benign(0.181) TCGA-E7-A4IJ-01 1 84369778 84369778 G A TTLL7 Missense_Mutation p.S731F 0.48 deleterious(0) possibly_damaging(0.897) TCGA-E7-A4IJ-01 1 89655858 89655858 C A GBP4 Missense_Mutation p.A354S 0.10 tolerated(0.23) possibly_damaging(0.612) TCGA-E7-A4IJ-01 1 89655859 89655859 C A GBP4 Missense_Mutation p.M353I 0.10 deleterious(0) possibly_damaging(0.868) TCGA-E7-A4IJ-01 1 94544953 94544953 C T ABCA4 Silent p.R388R 0.15 TCGA-E7-A4IJ-01 20 10036257 10036257 G A ANKEF1 Silent p.Q760Q 0.24 TCGA-E7-A4IJ-01 20 17602401 17602401 C A RRBP1 Silent p.L653L 0.39 TCGA-E7-A4IJ-01 20 17602402 17602402 A G RRBP1 Missense_Mutation p.L653P 0.39 deleterious(0) possibly_damaging(0.883) TCGA-E7-A4IJ-01 20 21494282 21494282 C A NKX2-2 Missense_Mutation p.G9V 0.08 deleterious(0.01) probably_damaging(0.96) TCGA-E7-A4IJ-01 20 23473662 23473662 G C CST8 Missense_Mutation p.S100T 0.12 tolerated(0.17) benign(0.045) TCGA-E7-A4IJ-01 20 30365345 30365345 C T TPX2 Silent p.F262F 0.07 TCGA-E7-A4IJ-01 20 30408033 30408033 G C MYLK2 Missense_Mutation p.D53H 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.681) TCGA-E7-A4IJ-01 20 35242298 35242298 C T SLA2 Missense_Mutation p.D253N 0.08 deleterious(0.03) benign(0.136) TCGA-E7-A4IJ-01 20 36634683 36634683 C T TTI1 Missense_Mutation p.E807K 0.45 tolerated(0.22) benign(0.012) TCGA-E7-A4IJ-01 20 4202244 4202244 C A ADRA1D Nonsense_Mutation p.E549* 0.28 TCGA-E7-A4IJ-01 20 48558189 48558189 G T RNF114 Missense_Mutation p.V78L 0.20 tolerated(0.79) benign(0) TCGA-E7-A4IJ-01 20 56179636 56179636 C G ZBP1 Missense_Mutation p.G428A 0.05 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-E7-A4IJ-01 20 9561495 9561495 C A PAK7 Missense_Mutation p.R96L 0.28 deleterious(0) probably_damaging(0.987) TCGA-E7-A4IJ-01 21 27852609 27852609 T C CYYR1 Missense_Mutation p.T106A 0.06 tolerated(0.83) benign(0.002) TCGA-E7-A4IJ-01 21 38884571 38884571 A T DYRK1A Missense_Mutation p.N677Y 0.05 tolerated_low_confidence(0.12) benign(0.119) TCGA-E7-A4IJ-01 21 39672394 39672394 C G KCNJ15 3'UTR 0.50 TCGA-E7-A4IJ-01 21 43162085 43162085 A T RIPK4 Missense_Mutation p.M423K 0.51 tolerated(0.77) benign(0.409) TCGA-E7-A4IJ-01 21 47969718 47969718 G A DIP2A Missense_Mutation p.D853N 0.27 deleterious(0) probably_damaging(0.978) TCGA-E7-A4IJ-01 22 19365415 19365415 T C HIRA Silent p.A530A 0.61 TCGA-E7-A4IJ-01 22 22707587 22707587 C T IGLV5-48 Nonsense_Mutation p.Q59* 0.12 TCGA-E7-A4IJ-01 22 23742462 23742462 A T ZDHHC8P1 RNA 0.61 TCGA-E7-A4IJ-01 22 31491441 31491441 G A SMTN Missense_Mutation p.M595I 0.76 deleterious(0) probably_damaging(0.997) TCGA-E7-A4IJ-01 22 31971290 31971290 G A SFI1 Silent p.R332R 0.06 TCGA-E7-A4IJ-01 22 39262341 39262341 G C CBX6 Missense_Mutation p.T371S 0.50 tolerated(0.1) possibly_damaging(0.636) TCGA-E7-A4IJ-01 22 41645814 41645814 C T RANGAP1 Silent p.L497L 0.22 TCGA-E7-A4IJ-01 22 43976449 43976449 C T EFCAB6 Silent p.K1041K 0.09 TCGA-E7-A4IJ-01 22 46652983 46652983 C G PKDREJ Missense_Mutation p.Q2079H 0.24 deleterious(0) probably_damaging(0.995) TCGA-E7-A4IJ-01 2 109086371 109086371 G A GCC2 Missense_Mutation p.E196K 0.08 tolerated(0.1) benign(0.129) TCGA-E7-A4IJ-01 2 121748326 121748326 G C GLI2 3'UTR 0.42 TCGA-E7-A4IJ-01 2 127806111 127806111 C A BIN1 Missense_Mutation p.R591S 0.24 deleterious(0.01) possibly_damaging(0.648) TCGA-E7-A4IJ-01 2 133489529 133489529 G C NCKAP5 Missense_Mutation p.P1742A 0.16 tolerated(0.37) benign(0.037) TCGA-E7-A4IJ-01 2 149227513 149227513 G C MBD5 Missense_Mutation p.L667F 0.30 tolerated(0.29) possibly_damaging(0.765) TCGA-E7-A4IJ-01 2 152520102 152520102 C T NEB Missense_Mutation p.S1908N 0.06 benign(0.007) TCGA-E7-A4IJ-01 2 15768964 15768964 G A DDX1 Splice_Site p.X625_splice 0.42 TCGA-E7-A4IJ-01 2 166032871 166032871 C T SCN3A Missense_Mutation p.E12K 0.41 deleterious(0.01) benign(0.047) TCGA-E7-A4IJ-01 2 166852550 166852550 T G SCN1A Missense_Mutation p.K1518N 0.11 deleterious(0) benign(0.106) TCGA-E7-A4IJ-01 2 170465233 170465234 - AG PPIG Frame_Shift_Ins p.G116Efs*12 0.27 TCGA-E7-A4IJ-01 2 179401884 179401884 C T TTN Missense_Mutation p.D33318N 0.21 TCGA-E7-A4IJ-01 2 179430194 179430194 A G TTN Missense_Mutation p.Y26889H 0.36 TCGA-E7-A4IJ-01 2 179579168 179579168 C T TTN Missense_Mutation p.R8778K 0.50 TCGA-E7-A4IJ-01 2 179595381 179595381 G A TTN Missense_Mutation p.S5960L 0.39 TCGA-E7-A4IJ-01 2 179631277 179631277 G A TTN Silent p.H3178H 0.39 TCGA-E7-A4IJ-01 2 187498059 187498059 G A ITGAV Missense_Mutation p.D197N 0.42 tolerated(0.12) benign(0.001) TCGA-E7-A4IJ-01 2 191231488 191231488 C G INPP1 Silent p.L111L 0.42 TCGA-E7-A4IJ-01 2 203680704 203680704 G A ICA1L Missense_Mutation p.T238I 0.61 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 2 219136173 219136173 C T PNKD Missense_Mutation p.S46F 0.70 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-E7-A4IJ-01 2 220428173 220428173 G A OBSL1 Missense_Mutation p.R862C 0.15 tolerated(0.05) benign(0.01) TCGA-E7-A4IJ-01 2 235951148 235951148 C G SH3BP4 Missense_Mutation p.Q579E 0.10 tolerated(0.56) benign(0.01) TCGA-E7-A4IJ-01 2 237489981 237489981 C T ACKR3 Silent p.H291H 0.32 TCGA-E7-A4IJ-01 2 242169582 242169582 G A HDLBP Silent p.L1193L 0.26 TCGA-E7-A4IJ-01 2 24881534 24881534 G C NCOA1 5'UTR 0.24 TCGA-E7-A4IJ-01 2 25458692 25458692 G A DNMT3A Silent p.F827F 0.35 TCGA-E7-A4IJ-01 2 26507037 26507037 G A HADHB Missense_Mutation p.D372N 0.34 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 2 27600946 27600946 G A ZNF513 Silent p.L364L 0.53 TCGA-E7-A4IJ-01 2 65299128 65299128 G T CEP68 Nonsense_Mutation p.E300* 0.66 TCGA-E7-A4IJ-01 2 71190301 71190301 G C ATP6V1B1 Missense_Mutation p.A307P 0.70 deleterious(0) probably_damaging(0.986) TCGA-E7-A4IJ-01 2 87000536 87000536 G C RMND5A 3'UTR 0.53 TCGA-E7-A4IJ-01 3 100119577 100119577 C T TOMM70A Missense_Mutation p.D73N 0.40 tolerated(0.67) possibly_damaging(0.555) TCGA-E7-A4IJ-01 3 119133815 119133815 G T ARHGAP31 Silent p.L1013L 0.12 TCGA-E7-A4IJ-01 3 126916019 126916019 C G C3orf56 Nonsense_Mutation p.S164* 0.26 TCGA-E7-A4IJ-01 3 130095562 130095562 C G COL6A5 Missense_Mutation p.H184D 0.18 tolerated(0.07) benign(0.019) TCGA-E7-A4IJ-01 3 133896863 133896863 C A RYK Silent p.V410V 0.23 TCGA-E7-A4IJ-01 3 140285025 140285025 G A CLSTN2 Missense_Mutation p.R933K 0.17 tolerated(0.55) benign(0.002) TCGA-E7-A4IJ-01 3 149619891 149619891 G T RNF13 Missense_Mutation p.V148F 0.55 deleterious(0) probably_damaging(0.983) TCGA-E7-A4IJ-01 3 149619893 149619893 C T RNF13 Silent p.V148V 0.55 TCGA-E7-A4IJ-01 3 15493152 15493152 C T COLQ Silent p.%3D 0.32 TCGA-E7-A4IJ-01 3 160395553 160395553 T C ARL14 Missense_Mutation p.F140S 0.11 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.70 deleterious(0.04) probably_damaging(0.96) TCGA-E7-A4IJ-01 3 184567805 184567805 A G VPS8 Missense_Mutation p.I250V 0.43 tolerated(0.47) benign(0.015) TCGA-E7-A4IJ-01 3 193151664 193151664 G A ATP13A4 Silent p.L938L 0.54 TCGA-E7-A4IJ-01 3 197421357 197421357 C T KIAA0226 Missense_Mutation p.E525K 0.60 deleterious(0.02) possibly_damaging(0.752) TCGA-E7-A4IJ-01 3 32031691 32031691 G A ZNF860 Missense_Mutation p.E374K 0.23 deleterious(0.03) possibly_damaging(0.658) TCGA-E7-A4IJ-01 3 37792018 37792018 C G ITGA9 Silent p.L833L 0.08 TCGA-E7-A4IJ-01 3 41268817 41268817 G A CTNNB1 Missense_Mutation p.S352N 0.14 deleterious(0.04) benign(0.011) TCGA-E7-A4IJ-01 3 43384956 43384956 C T SNRK Silent p.I355I 0.28 TCGA-E7-A4IJ-01 3 47888164 47888164 C G DHX30 Missense_Mutation p.F534L 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-E7-A4IJ-01 3 48956225 48956225 C T ARIH2OS Missense_Mutation p.V120I 0.28 deleterious_low_confidence(0) benign(0.198) TCGA-E7-A4IJ-01 3 48956243 48956243 C T ARIH2OS Missense_Mutation p.D114N 0.35 tolerated_low_confidence(0.17) possibly_damaging(0.728) TCGA-E7-A4IJ-01 3 49051451 49051451 C T WDR6 Silent p.L858L 0.41 TCGA-E7-A4IJ-01 3 49053588 49053588 C A DALRD3 Intron 0.43 TCGA-E7-A4IJ-01 3 49053596 49053596 C T DALRD3 Missense_Mutation p.D442N 0.43 tolerated(0.05) probably_damaging(0.925) TCGA-E7-A4IJ-01 3 49054938 49054938 C T DALRD3 Missense_Mutation p.D243N 0.39 tolerated(0.05) possibly_damaging(0.548) TCGA-E7-A4IJ-01 3 50103753 50103753 G A RBM6 Missense_Mutation p.E921K 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-E7-A4IJ-01 3 50369279 50369279 G T RASSF1 Missense_Mutation p.D161E 0.08 deleterious(0.01) probably_damaging(1) TCGA-E7-A4IJ-01 3 51994202 51994202 C T PCBP4 Intron 0.38 TCGA-E7-A4IJ-01 3 52595922 52595922 C G PBRM1 Missense_Mutation p.M1331I 0.11 tolerated(0.22) benign(0.043) TCGA-E7-A4IJ-01 3 53809940 53809940 G A CACNA1D Silent p.E1430E 0.25 TCGA-E7-A4IJ-01 3 58154324 58154324 C T FLNB Silent p.I2483I 0.41 TCGA-E7-A4IJ-01 3 58242398 58242398 C T ABHD6 Silent p.L29L 0.16 TCGA-E7-A4IJ-01 3 71733825 71733825 G C EIF4E3 3'UTR 0.36 TCGA-E7-A4IJ-01 3 71739207 71739207 G C EIF4E3 Missense_Mutation p.I194M 0.39 deleterious(0) probably_damaging(0.938) TCGA-E7-A4IJ-01 3 9974296 9974296 C G IL17RC Missense_Mutation p.I535M 0.53 tolerated(0.27) benign(0.071) TCGA-E7-A4IJ-01 4 10446221 10446221 C G ZNF518B Missense_Mutation p.E578Q 0.61 tolerated(0.16) benign(0.005) TCGA-E7-A4IJ-01 4 109578780 109578780 A T OSTC Missense_Mutation p.R136S 0.25 tolerated(0.29) possibly_damaging(0.876) TCGA-E7-A4IJ-01 4 119948212 119948212 G T SYNPO2 Missense_Mutation p.D230Y 0.62 tolerated(0.17) benign(0.029) TCGA-E7-A4IJ-01 4 119948266 119948266 G C SYNPO2 Missense_Mutation p.E248Q 0.70 tolerated(0.16) benign(0.139) TCGA-E7-A4IJ-01 4 134073854 134073854 C T PCDH10 Silent p.C853C 0.12 TCGA-E7-A4IJ-01 4 1346904 1346904 G C UVSSA Missense_Mutation p.E213Q 0.11 tolerated(0.26) benign(0.01) TCGA-E7-A4IJ-01 4 156698781 156698781 G C GUCY1B3 Missense_Mutation p.R95T 0.58 tolerated(0.11) benign(0.093) TCGA-E7-A4IJ-01 4 160264498 160264498 C T RAPGEF2 Missense_Mutation p.R905C 0.15 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 4 183600882 183600882 G C TENM3 Missense_Mutation p.E464Q 0.16 tolerated(0.18) possibly_damaging(0.727) TCGA-E7-A4IJ-01 4 187539071 187539071 G C FAT1 Nonsense_Mutation p.S2890* 0.16 TCGA-E7-A4IJ-01 4 187627993 187627993 A G FAT1 Missense_Mutation p.Y997H 0.12 possibly_damaging(0.491) TCGA-E7-A4IJ-01 4 3422404 3422404 G C RGS12 Missense_Mutation p.E933Q 0.08 deleterious(0) possibly_damaging(0.859) TCGA-E7-A4IJ-01 4 38016207 38016207 C T TBC1D1 Silent p.F165F 0.50 TCGA-E7-A4IJ-01 4 38016321 38016321 C G TBC1D1 Silent p.V203V 0.46 TCGA-E7-A4IJ-01 4 38016420 38016420 C G TBC1D1 Missense_Mutation p.F236L 0.26 tolerated(0.31) benign(0.002) TCGA-E7-A4IJ-01 4 68928659 68928659 G A TMPRSS11F Intron 0.23 TCGA-E7-A4IJ-01 4 71347237 71347237 C A MUC7 Missense_Mutation p.A259D 0.06 tolerated(0.39) unknown(0) TCGA-E7-A4IJ-01 5 118582714 118582714 C G DMXL1 Missense_Mutation p.L2962V 0.45 tolerated(0.15) possibly_damaging(0.643) TCGA-E7-A4IJ-01 5 128983544 128983544 A T ADAMTS19 Silent p.R647R 0.18 TCGA-E7-A4IJ-01 5 137089348 137089348 G C HNRNPA0 Silent p.G136G 0.12 TCGA-E7-A4IJ-01 5 139494117 139494117 C T PURA Silent p.F117F 0.73 TCGA-E7-A4IJ-01 5 140214208 140214208 G T PCDHA7 Missense_Mutation p.Q80H 0.15 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-E7-A4IJ-01 5 140516197 140516197 C T PCDHB5 Missense_Mutation p.P394L 0.14 deleterious_low_confidence(0.03) benign(0.038) TCGA-E7-A4IJ-01 5 145439428 145439428 G C SH3RF2 Splice_Site p.X519_splice 0.54 TCGA-E7-A4IJ-01 5 14716863 14716863 C T ANKH Missense_Mutation p.E365K 0.59 tolerated(0.18) benign(0.001) TCGA-E7-A4IJ-01 5 154284069 154284069 C T GEMIN5 Missense_Mutation p.R877K 0.73 tolerated(1) benign(0) TCGA-E7-A4IJ-01 5 154395929 154395929 T A KIF4B Missense_Mutation p.L837Q 0.77 deleterious(0) probably_damaging(0.98) TCGA-E7-A4IJ-01 5 15928335 15928335 G C FBXL7 Missense_Mutation p.R155T 0.52 tolerated(0.49) benign(0.042) TCGA-E7-A4IJ-01 5 173491271 173491271 C T NSG2 Nonsense_Mutation p.Q56* 0.38 TCGA-E7-A4IJ-01 5 37121857 37121857 C T C5orf42 Missense_Mutation p.R2962Q 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-E7-A4IJ-01 5 43494697 43494697 C G C5orf34 Missense_Mutation p.E387Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-E7-A4IJ-01 5 58882314 58882314 C A PDE4D Intron 0.40 TCGA-E7-A4IJ-01 5 71740033 71740033 C T ZNF366 Silent p.Q595Q 0.80 TCGA-E7-A4IJ-01 5 71757131 71757131 C A ZNF366 Missense_Mutation p.D65Y 0.30 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-E7-A4IJ-01 5 71757279 71757279 G T ZNF366 Missense_Mutation p.F15L 0.29 tolerated_low_confidence(0.14) benign(0.002) TCGA-E7-A4IJ-01 5 77298814 77298814 G C AP3B1 Missense_Mutation p.S1066C 0.23 deleterious(0) possibly_damaging(0.7) TCGA-E7-A4IJ-01 5 89949431 89949431 C G GPR98 Missense_Mutation p.S1347C 0.50 possibly_damaging(0.865) TCGA-E7-A4IJ-01 6 105726282 105726282 C T PREP Missense_Mutation p.E624K 0.61 tolerated(0.76) benign(0.001) TCGA-E7-A4IJ-01 6 117861961 117861961 G C DCBLD1 Missense_Mutation p.G411A 0.15 deleterious(0) possibly_damaging(0.899) TCGA-E7-A4IJ-01 6 133070833 133070833 C A VNN2 Splice_Site p.X457_splice 0.50 TCGA-E7-A4IJ-01 6 144165737 144165737 C G LTV1 Missense_Mutation p.L40V 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 6 154520812 154520812 G T IPCEF1 Silent p.I300I 0.09 TCGA-E7-A4IJ-01 6 15507590 15507590 C T JARID2 Missense_Mutation p.L892F 0.12 deleterious(0) probably_damaging(0.999) TCGA-E7-A4IJ-01 6 157502169 157502169 G A ARID1B Missense_Mutation p.E1068K 0.19 probably_damaging(0.995) TCGA-E7-A4IJ-01 6 157521932 157521932 G C ARID1B Missense_Mutation p.E1402Q 0.47 possibly_damaging(0.648) TCGA-E7-A4IJ-01 6 158504508 158504508 G A SYNJ2 Silent p.L971L 0.13 TCGA-E7-A4IJ-01 6 160490985 160490985 G C IGF2R Missense_Mutation p.W1446C 0.19 deleterious(0) benign(0.152) TCGA-E7-A4IJ-01 6 161139345 161139345 T A PLG Silent p.S269S 0.11 TCGA-E7-A4IJ-01 6 161560579 161560579 C T AGPAT4 Nonsense_Mutation p.W306* 0.12 TCGA-E7-A4IJ-01 6 170866126 170866126 G A TBP Silent p.Q3Q 0.16 TCGA-E7-A4IJ-01 6 24489806 24489806 C G GPLD1 5'UTR 0.09 TCGA-E7-A4IJ-01 6 26017778 26017778 C A HIST1H1A Silent p.S61S 0.09 TCGA-E7-A4IJ-01 6 26056192 26056192 C T HIST1H1C Silent p.P155P 0.71 TCGA-E7-A4IJ-01 6 27115202 27115202 G T HIST1H2AH Missense_Mutation p.G99C 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.564) TCGA-E7-A4IJ-01 6 28293957 28293960 CAGT AGG ZSCAN31 Frame_Shift_Del p.T402Pfs*35 0.09 TCGA-E7-A4IJ-01 6 38893923 38893923 C G DNAH8 Silent p.L3468L 0.71 TCGA-E7-A4IJ-01 6 41126514 41126514 C T TREM2 Silent p.L227L 0.78 TCGA-E7-A4IJ-01 6 5004162 5004162 G C RPP40 Missense_Mutation p.H25Q 0.07 tolerated(0.09) benign(0.001) TCGA-E7-A4IJ-01 6 56469567 56469567 C T DST Intron 0.24 TCGA-E7-A4IJ-01 6 56469908 56469908 C T DST Intron 0.29 TCGA-E7-A4IJ-01 6 56470221 56470221 C A DST Intron 0.36 TCGA-E7-A4IJ-01 6 56470287 56470287 C T DST Intron 0.26 TCGA-E7-A4IJ-01 7 100252642 100252642 C T ACTL6B Silent p.P123P 0.21 TCGA-E7-A4IJ-01 7 100252740 100252740 C T ACTL6B Missense_Mutation p.E91K 0.14 tolerated(0.09) possibly_damaging(0.477) TCGA-E7-A4IJ-01 7 100345823 100345823 A G ZAN Missense_Mutation p.I363V 0.09 probably_damaging(0.913) TCGA-E7-A4IJ-01 7 100395368 100395368 G C ZAN 3'UTR 0.28 TCGA-E7-A4IJ-01 7 100683865 100683865 G C MUC17 Silent p.T3056T 0.11 TCGA-E7-A4IJ-01 7 100683873 100683873 C G MUC17 Missense_Mutation p.A3059G 0.11 probably_damaging(0.978) TCGA-E7-A4IJ-01 7 100684592 100684592 A G MUC17 Missense_Mutation p.S3299G 0.10 possibly_damaging(0.829) TCGA-E7-A4IJ-01 7 100691270 100691270 G A MUC17 Missense_Mutation p.G4137R 0.10 unknown(0) TCGA-E7-A4IJ-01 7 114655788 114655788 G A MDFIC Silent p.L289L 0.51 TCGA-E7-A4IJ-01 7 133164868 133164868 T A EXOC4 Missense_Mutation p.Y465N 0.35 tolerated(0.16) possibly_damaging(0.893) TCGA-E7-A4IJ-01 7 135311064 135311064 C G NUP205 Missense_Mutation p.A1583G 0.23 tolerated(0.18) benign(0.168) TCGA-E7-A4IJ-01 7 135661910 135661910 C A MTPN 5'UTR 0.34 TCGA-E7-A4IJ-01 7 135661946 135661946 G A MTPN 5'UTR 0.33 TCGA-E7-A4IJ-01 7 138394366 138394366 T A ATP6V0A4 Intron 0.22 TCGA-E7-A4IJ-01 7 139257861 139257861 G C HIPK2 Missense_Mutation p.P1137A 0.47 tolerated(0.23) probably_damaging(0.997) TCGA-E7-A4IJ-01 7 142962365 142962365 C T GSTK1 Silent p.I188I 0.40 TCGA-E7-A4IJ-01 7 148978876 148978876 G A ZNF783 Silent p.K361K 0.36 TCGA-E7-A4IJ-01 7 150389858 150389858 G T GIMAP2 Missense_Mutation p.D162Y 0.08 deleterious(0.04) benign(0.016) TCGA-E7-A4IJ-01 7 150648204 150648204 G T KCNH2 Silent p.L650L 0.18 TCGA-E7-A4IJ-01 7 154684052 154684052 G A DPP6 Silent p.P820P 0.33 TCGA-E7-A4IJ-01 7 2403297 2403297 G T EIF3B Nonsense_Mutation p.E301* 0.48 TCGA-E7-A4IJ-01 7 39472768 39472768 C A POU6F2 Silent p.P373P 0.28 TCGA-E7-A4IJ-01 7 44555496 44555496 G A NPC1L1 Silent p.L1261L 0.46 TCGA-E7-A4IJ-01 7 47835685 47835685 T C PKD1L1 Missense_Mutation p.R2753G 0.14 deleterious(0.03) possibly_damaging(0.581) TCGA-E7-A4IJ-01 7 72419073 72419073 C G POM121 3'UTR 0.45 TCGA-E7-A4IJ-01 7 72419443 72419443 G C POM121 3'UTR 0.18 TCGA-E7-A4IJ-01 7 73111993 73111993 G C WBSCR22 Missense_Mutation p.E271Q 0.31 tolerated(0.17) benign(0.175) TCGA-E7-A4IJ-01 7 74486509 74486509 C T WBSCR16 Silent p.G133G 0.16 TCGA-E7-A4IJ-01 7 75643144 75643144 G A STYXL1 Silent p.P123P 0.47 TCGA-E7-A4IJ-01 7 82578956 82578956 C T PCLO Missense_Mutation p.D3650N 0.21 unknown(0) TCGA-E7-A4IJ-01 7 82581272 82581272 T G PCLO Missense_Mutation p.L2999F 0.17 unknown(0) TCGA-E7-A4IJ-01 7 83037734 83037734 C T SEMA3E Missense_Mutation p.G207E 0.22 deleterious(0) possibly_damaging(0.756) TCGA-E7-A4IJ-01 7 91715563 91715563 C G AKAP9 Missense_Mutation p.H3016D 0.18 benign(0.002) TCGA-E7-A4IJ-01 7 92987725 92987725 G A CCDC132 Missense_Mutation p.D958N 0.16 tolerated(0.1) probably_damaging(0.953) TCGA-E7-A4IJ-01 7 99709785 99709785 G C TAF6 Silent p.L259L 0.63 TCGA-E7-A4IJ-01 7 99753508 99753508 C T C7orf43 Intron 0.73 TCGA-E7-A4IJ-01 8 101608864 101608864 C T SNX31 Intron 0.20 TCGA-E7-A4IJ-01 8 102504964 102504964 C T GRHL2 5'UTR 0.15 TCGA-E7-A4IJ-01 8 103662346 103662346 C A KLF10 3'UTR 0.12 TCGA-E7-A4IJ-01 8 103662492 103662492 C T KLF10 Silent p.R437R 0.08 TCGA-E7-A4IJ-01 8 110523074 110523074 G A PKHD1L1 Missense_Mutation p.V3822M 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-E7-A4IJ-01 8 12948899 12948899 T A DLC1 Missense_Mutation p.K1261N 0.11 deleterious(0) possibly_damaging(0.806) TCGA-E7-A4IJ-01 8 131193031 131193032 TT A ASAP1 Frame_Shift_Del p.K209Wfs*33 0.08 TCGA-E7-A4IJ-01 8 132051646 132051646 G T ADCY8 Silent p.R312R 0.10 TCGA-E7-A4IJ-01 8 139153499 139153499 C A FAM135B Silent p.L1244L 0.11 TCGA-E7-A4IJ-01 8 139856338 139856338 T A COL22A1 Missense_Mutation p.K241M 0.11 unknown(0) TCGA-E7-A4IJ-01 8 141461150 141461150 G C TRAPPC9 Missense_Mutation p.S206C 0.26 deleterious(0) possibly_damaging(0.639) TCGA-E7-A4IJ-01 8 142228883 142228883 C T SLC45A4 Missense_Mutation p.E235K 0.17 deleterious(0.04) possibly_damaging(0.859) TCGA-E7-A4IJ-01 8 144943015 144943015 G C EPPK1 Silent p.L1469L 0.18 TCGA-E7-A4IJ-01 8 145018013 145018013 G A PLEC Intron 0.07 TCGA-E7-A4IJ-01 8 145746109 145746109 T G LRRC14 Missense_Mutation p.F273V 0.10 tolerated(0.09) benign(0.284) TCGA-E7-A4IJ-01 8 23185981 23185981 C T LOXL2 Nonsense_Mutation p.W355* 0.14 TCGA-E7-A4IJ-01 8 24366066 24366066 A G ADAM7 3'UTR 0.44 TCGA-E7-A4IJ-01 8 38271223 38271223 G A FGFR1 Missense_Mutation p.H829Y 0.15 deleterious(0.02) probably_damaging(0.92) TCGA-E7-A4IJ-01 8 62212710 62212710 C T CLVS1 Silent p.F108F 0.37 TCGA-E7-A4IJ-01 8 67525091 67525091 G A MYBL1 5'UTR 0.59 TCGA-E7-A4IJ-01 8 67986500 67986500 T A CSPP1 Missense_Mutation p.L41M 0.19 deleterious(0) possibly_damaging(0.885) TCGA-E7-A4IJ-01 8 72246340 72246340 G C EYA1 Nonsense_Mutation p.S65* 0.76 TCGA-E7-A4IJ-01 8 72945901 72945901 G C TRPA1 Missense_Mutation p.P949R 0.67 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 8 75929607 75929607 G A CRISPLD1 Missense_Mutation p.G350D 0.32 deleterious(0.03) probably_damaging(1) TCGA-E7-A4IJ-01 8 80677792 80677792 G C HEY1 Silent p.T186T 0.12 TCGA-E7-A4IJ-01 8 98289735 98289735 G A TSPYL5 Missense_Mutation p.S113L 0.45 tolerated(0.05) benign(0.003) TCGA-E7-A4IJ-01 9 104170245 104170245 T A ZNF189 Silent p.T65T 0.30 TCGA-E7-A4IJ-01 9 130493182 130493182 C T TTC16 Missense_Mutation p.S707F 0.66 tolerated(0.09) benign(0.332) TCGA-E7-A4IJ-01 9 130705384 130705384 G A FAM102A 3'UTR 0.79 TCGA-E7-A4IJ-01 9 17795767 17795767 C T SH3GL2 3'UTR 0.33 TCGA-E7-A4IJ-01 9 38016080 38016080 G C SHB Missense_Mutation p.L256V 0.74 tolerated(0.58) benign(0.138) TCGA-E7-A4IJ-01 9 40702779 40702779 G T SPATA31A3 Missense_Mutation p.A146S 0.05 deleterious(0.01) possibly_damaging(0.866) TCGA-E7-A4IJ-01 9 5044482 5044482 C G JAK2 Missense_Mutation p.L144V 0.59 tolerated(1) benign(0.001) TCGA-E7-A4IJ-01 9 77249651 77249651 A G RORB Silent p.R66R 0.14 TCGA-E7-A4IJ-01 9 96846860 96846860 C T PTPDC1 Silent p.L16L 0.74 TCGA-E7-A4IJ-01 X 123197011 123197011 C T STAG2 Nonsense_Mutation p.Q593* 0.64 TCGA-E7-A4IJ-01 X 135126936 135126936 G A SLC9A6 3'UTR 0.62 TCGA-E7-A4IJ-01 X 17043290 17043300 GCAGAACAGAT - REPS2 Frame_Shift_Del p.E220Sfs*5 0.32 TCGA-E7-A4IJ-01 X 18265988 18265988 T A SCML2 Missense_Mutation p.T491S 0.35 tolerated(0.94) benign(0.002) TCGA-E7-A4IJ-01 X 30327166 30327166 C G NR0B1 Missense_Mutation p.W105C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-E7-A4IJ-01 X 31090105 31090105 G A FTHL17 5'UTR 0.91 TCGA-E7-A4IJ-01 X 40534543 40534543 G T MED14 Missense_Mutation p.P984H 0.50 deleterious(0) probably_damaging(1) TCGA-E7-A4IJ-01 X 47104311 47104311 G A USP11 Missense_Mutation p.E735K 0.59 tolerated(0.85) benign(0.403) TCGA-E7-A4IJ-01 X 48820025 48820025 C T KCND1 Silent p.L587L 0.60 TCGA-E7-A4IJ-01 X 57619078 57619078 C G ZXDB Silent p.A199A 0.33 TCGA-E7-A4XJ-01 10 1089293 1089293 G C IDI1 Silent p.T118T 0.43 TCGA-E7-A4XJ-01 10 71690164 71690164 C T COL13A1 Silent p.R502R 0.50 TCGA-E7-A4XJ-01 10 90429681 90429681 C T LIPF Silent p.G180G 0.40 TCGA-E7-A4XJ-01 11 108196912 108196923 TCAAGCAAATGA - ATM In_Frame_Del p.Q2314_K2317del 0.17 TCGA-E7-A4XJ-01 11 117870389 117870389 A G IL10RA 3'UTR 0.42 TCGA-E7-A4XJ-01 11 22291881 22291881 G A ANO5 Missense_Mutation p.R641H 0.55 deleterious(0.01) benign(0.037) TCGA-E7-A4XJ-01 11 56020571 56020571 A G OR5T3 Missense_Mutation p.D299G 0.46 deleterious(0.03) benign(0.072) TCGA-E7-A4XJ-01 11 67811768 67811768 T A TCIRG1 Missense_Mutation p.V326E 0.50 tolerated(0.09) benign(0.371) TCGA-E7-A4XJ-01 12 123746239 123746239 T A CDK2AP1 3'UTR 0.51 TCGA-E7-A4XJ-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.38 deleterious(0) possibly_damaging(0.479) TCGA-E7-A4XJ-01 12 2944036 2944037 - GG NRIP2 Frame_Shift_Ins p.P39Hfs*14 0.24 TCGA-E7-A4XJ-01 12 51450186 51450186 G A LETMD1 Silent p.L285L 0.41 TCGA-E7-A4XJ-01 12 70732480 70732480 G T CNOT2 Silent p.T352T 0.07 TCGA-E7-A4XJ-01 13 77825389 77825389 T G MYCBP2 Missense_Mutation p.K722Q 0.39 probably_damaging(0.92) TCGA-E7-A4XJ-01 14 80328211 80328211 C A NRXN3 Silent p.S1030S 0.17 TCGA-E7-A4XJ-01 15 101775492 101775492 G A CHSY1 Missense_Mutation p.T204M 0.29 tolerated(0.06) benign(0.21) TCGA-E7-A4XJ-01 15 99459993 99459993 G A IGF1R Missense_Mutation p.G697R 0.49 tolerated(0.1) probably_damaging(0.924) TCGA-E7-A4XJ-01 16 1604966 1604966 G A TMEM204 Missense_Mutation p.R207H 0.30 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-E7-A4XJ-01 16 30749672 30749672 C T SRCAP Missense_Mutation p.R2771W 0.08 unknown(0) TCGA-E7-A4XJ-01 17 34171324 34171324 A G TAF15 Missense_Mutation p.N377D 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A4XJ-01 17 37985652 37985653 - AG IKZF3 Frame_Shift_Ins p.E51Lfs*4 0.25 TCGA-E7-A4XJ-01 17 38906800 38906800 G A KRT25 Missense_Mutation p.A336V 0.40 tolerated(0.38) benign(0.013) TCGA-E7-A4XJ-01 17 40838159 40838159 G A CNTNAP1 Silent p.E300E 0.38 TCGA-E7-A4XJ-01 17 60346400 60346400 G A TBC1D3P2 RNA 0.22 TCGA-E7-A4XJ-01 17 67273844 67273844 C T ABCA5 Missense_Mutation p.M844I 0.36 deleterious(0.03) benign(0) TCGA-E7-A4XJ-01 19 1112417 1112417 G A SBNO2 Silent p.R833R 0.33 TCGA-E7-A4XJ-01 19 20748576 20748576 G C ZNF737 5'Flank 0.32 TCGA-E7-A4XJ-01 19 39306242 39306242 C T ECH1 3'UTR 0.35 TCGA-E7-A4XJ-01 19 46521359 46521359 C T CCDC61 Silent p.S464S 0.14 TCGA-E7-A4XJ-01 1 186057798 186057798 G A HMCN1 Missense_Mutation p.R3213Q 0.33 probably_damaging(0.993) TCGA-E7-A4XJ-01 1 19513092 19513092 G A UBR4 Silent p.T564T 0.38 TCGA-E7-A4XJ-01 1 204944416 204944416 C T NFASC Missense_Mutation p.R526W 0.37 deleterious(0) probably_damaging(0.983) TCGA-E7-A4XJ-01 1 241033372 241033372 G C RGS7 Missense_Mutation p.L145V 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-E7-A4XJ-01 1 27057961 27057961 C T ARID1A Nonsense_Mutation p.Q557* 0.34 TCGA-E7-A4XJ-01 1 27099846 27099847 GT - ARID1A Frame_Shift_Del p.S1242Rfs*16 0.52 TCGA-E7-A4XJ-01 1 79358832 79358832 G A ELTD1 Missense_Mutation p.R598C 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-E7-A4XJ-01 20 49196247 49196247 G A PTPN1 Nonsense_Mutation p.W291* 0.40 TCGA-E7-A4XJ-01 22 41215231 41215231 C T SLC25A17 Missense_Mutation p.E8K 0.07 tolerated(0.12) benign(0.047) TCGA-E7-A4XJ-01 2 109381658 109381658 C T RANBP2 Nonsense_Mutation p.R1555* 0.42 TCGA-E7-A4XJ-01 2 26257488 26257488 A C RAB10 Missense_Mutation p.K4T 0.29 deleterious(0.02) benign(0.049) TCGA-E7-A4XJ-01 2 97427205 97427205 G A CNNM4 Missense_Mutation p.D157N 0.43 tolerated(0.27) benign(0.003) TCGA-E7-A4XJ-01 3 5021603 5021603 C T BHLHE40 Intron 0.33 TCGA-E7-A4XJ-01 3 57994400 57994400 A G FLNB Missense_Mutation p.I37V 0.28 tolerated(0.19) benign(0.045) TCGA-E7-A4XJ-01 3 78688943 78688943 C T ROBO1 Silent p.T996T 0.32 TCGA-E7-A4XJ-01 3 89521721 89521721 C T EPHA3 Missense_Mutation p.T933M 0.43 tolerated(0.34) probably_damaging(0.934) TCGA-E7-A4XJ-01 4 20884250 20884250 C A KCNIP4 Silent p.T48T 0.29 TCGA-E7-A4XJ-01 4 37831699 37831699 T A PGM2 Silent p.A65A 0.33 TCGA-E7-A4XJ-01 4 39482195 39482195 G A LIAS 3'Flank 0.36 TCGA-E7-A4XJ-01 5 113829165 113829165 C A KCNN2 Missense_Mutation p.A483E 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-E7-A4XJ-01 5 126781360 126781360 C T MEGF10 Silent p.V901V 0.37 TCGA-E7-A4XJ-01 5 13751270 13751270 G A DNAH5 Missense_Mutation p.R3710C 0.36 possibly_damaging(0.898) TCGA-E7-A4XJ-01 6 34003851 34003851 C T GRM4 Missense_Mutation p.R679H 0.37 deleterious(0) probably_damaging(1) TCGA-E7-A4XJ-01 6 34949612 34949612 G A ANKS1A Missense_Mutation p.R194Q 0.35 deleterious(0) probably_damaging(0.96) TCGA-E7-A4XJ-01 6 72892669 72892669 G C RIMS1 Missense_Mutation p.D499H 0.70 deleterious(0) possibly_damaging(0.752) TCGA-E7-A4XJ-01 7 140453155 140453155 C A BRAF Missense_Mutation p.D594Y 0.39 deleterious(0) probably_damaging(0.988) TCGA-E7-A4XJ-01 8 100523357 100523357 C T VPS13B Missense_Mutation p.T1442I 0.34 deleterious(0) benign(0.019) TCGA-E7-A4XJ-01 8 17815264 17815264 G A PCM1 Missense_Mutation p.D674N 0.14 tolerated(0.5) benign(0.02) TCGA-E7-A4XJ-01 8 92307793 92307793 C T SLC26A7 Silent p.N113N 0.27 TCGA-E7-A4XJ-01 8 95508078 95508078 G A KIAA1429 Silent p.D1475D 0.43 TCGA-E7-A4XJ-01 X 31497127 31497127 G C DMD Missense_Mutation p.L2881V 0.73 possibly_damaging(0.567) TCGA-E7-A519-01 10 18955519 18955519 T C ARL5B Missense_Mutation p.I21T 0.30 deleterious(0) probably_damaging(0.998) TCGA-E7-A519-01 11 14276187 14276187 T G SPON1 RNA 0.37 TCGA-E7-A519-01 11 28318476 28318476 C T METTL15 Missense_Mutation p.A259V 0.35 deleterious(0.01) probably_damaging(0.942) TCGA-E7-A519-01 11 63670556 63670556 A - MARK2 Frame_Shift_Del p.N481Ifs*26 0.25 TCGA-E7-A519-01 11 77090412 77090412 G - PAK1 Frame_Shift_Del p.R105Afs*39 0.27 TCGA-E7-A519-01 12 53165944 53165944 G A KRT76 Silent p.V357V 0.40 TCGA-E7-A519-01 13 27669915 27669915 T C USP12 Silent p.L132L 0.42 TCGA-E7-A519-01 14 105411798 105411798 C A AHNAK2 Silent p.S3330S 0.35 TCGA-E7-A519-01 14 21109336 21109336 T C OR6S1 Missense_Mutation p.K172R 0.43 tolerated(0.14) benign(0.007) TCGA-E7-A519-01 14 35565813 35565813 C G PPP2R3C Missense_Mutation p.E263D 0.28 tolerated(0.53) benign(0.065) TCGA-E7-A519-01 14 65009310 65009310 C T HSPA2 Silent p.I581I 0.36 TCGA-E7-A519-01 15 29397660 29397660 C T APBA2 Missense_Mutation p.P535S 0.32 deleterious(0.02) possibly_damaging(0.558) TCGA-E7-A519-01 15 44065412 44065412 A T ELL3 Missense_Mutation p.Y366N 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A519-01 15 48936855 48936855 T C FBN1 Missense_Mutation p.R38G 0.36 benign(0.05) TCGA-E7-A519-01 15 49659797 49659797 A G FAM227B Silent p.Y373Y 0.19 TCGA-E7-A519-01 16 10626689 10626689 T C EMP2 3'UTR 0.20 TCGA-E7-A519-01 16 1723945 1723945 A G CRAMP1L Missense_Mutation p.N1237D 0.40 deleterious(0.01) probably_damaging(0.947) TCGA-E7-A519-01 16 29888671 29888671 G A SEZ6L2 Silent p.P610P 0.38 TCGA-E7-A519-01 16 30012078 30012078 G C INO80E Splice_Site p.X69_splice 0.34 TCGA-E7-A519-01 16 30094853 30094853 G C PPP4C Missense_Mutation p.D148H 0.44 deleterious(0.01) probably_damaging(1) TCGA-E7-A519-01 16 3819231 3819231 G - CREBBP Frame_Shift_Del p.Q1002Kfs*20 0.26 TCGA-E7-A519-01 16 70562835 70562835 G T SF3B3 Missense_Mutation p.D44Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-E7-A519-01 17 5212049 5212049 A G RABEP1 Missense_Mutation p.Q32R 0.45 deleterious(0.04) benign(0.003) TCGA-E7-A519-01 17 65628283 65628283 G C PITPNC1 Missense_Mutation p.V131L 0.26 tolerated(0.81) benign(0.001) TCGA-E7-A519-01 17 7810216 7810216 T C CHD3 Silent p.R1570R 0.24 TCGA-E7-A519-01 18 2538932 2538932 G A METTL4 3'UTR 0.48 TCGA-E7-A519-01 18 2539047 2539047 G C METTL4 Silent p.L457L 0.33 TCGA-E7-A519-01 18 29040838 29040838 G A DSG3 Missense_Mutation p.D243N 0.22 deleterious(0.04) probably_damaging(1) TCGA-E7-A519-01 18 51888300 51888300 A G C18orf54 Missense_Mutation p.I191V 0.31 tolerated(0.42) benign(0.01) TCGA-E7-A519-01 19 20117620 20117620 A G ZNF682 Missense_Mutation p.C231R 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A519-01 19 36640691 36640691 C T CAPNS1 Intron 0.24 TCGA-E7-A519-01 1 100928218 100928218 C T CDC14A Missense_Mutation p.H207Y 0.43 deleterious(0) probably_damaging(0.95) TCGA-E7-A519-01 1 110754200 110754200 G C KCNC4 Missense_Mutation p.E27Q 0.32 tolerated_low_confidence(0.21) probably_damaging(0.998) TCGA-E7-A519-01 1 11151198 11151198 G T EXOSC10 Missense_Mutation p.F172L 0.42 deleterious(0.01) possibly_damaging(0.701) TCGA-E7-A519-01 1 120438821 120438821 C G ADAM30 Missense_Mutation p.E47Q 0.35 tolerated(0.06) benign(0.342) TCGA-E7-A519-01 1 157062551 157062551 G A ETV3L Missense_Mutation p.P326S 0.44 tolerated_low_confidence(0.13) benign(0.015) TCGA-E7-A519-01 1 159015224 159015224 A T IFI16 Silent p.P489P 0.57 TCGA-E7-A519-01 1 237777766 237777766 C A RYR2 Missense_Mutation p.P1780T 0.40 probably_damaging(1) TCGA-E7-A519-01 1 240371472 240371472 T A FMN2 Silent p.P1120P 0.22 TCGA-E7-A519-01 1 24106391 24106391 A G PITHD1 Missense_Mutation p.M94V 0.33 tolerated(0.31) benign(0.017) TCGA-E7-A519-01 1 27058083 27058083 C - ARID1A Frame_Shift_Del p.P598Lfs*21 0.24 TCGA-E7-A519-01 1 34204787 34204787 C T CSMD2 Silent p.L734L 0.42 TCGA-E7-A519-01 1 36556922 36556922 G A ADPRHL2 Missense_Mutation p.E97K 0.28 tolerated(0.09) benign(0.276) TCGA-E7-A519-01 1 47024369 47024369 C - MKNK1 Frame_Shift_Del p.A426Hfs*2 0.20 TCGA-E7-A519-01 20 25436326 25436326 C - NINL Frame_Shift_Del p.D1314Ifs*3 0.27 TCGA-E7-A519-01 20 49626664 49626664 C T KCNG1 Missense_Mutation p.G71D 0.10 deleterious(0) probably_damaging(1) TCGA-E7-A519-01 20 9546583 9546583 A G PAK7 Missense_Mutation p.M480T 0.35 deleterious(0) probably_damaging(0.999) TCGA-E7-A519-01 21 10863060 10863060 C T IGHV1OR21-1 Missense_Mutation p.T119I 0.17 deleterious(0) probably_damaging(0.936) TCGA-E7-A519-01 21 34165906 34165906 G T C21orf62 3'UTR 0.25 TCGA-E7-A519-01 21 47783764 47783764 G C PCNT Missense_Mutation p.E842Q 0.35 possibly_damaging(0.727) TCGA-E7-A519-01 22 29735056 29735056 C T AP1B1 Missense_Mutation p.G696S 0.34 tolerated(0.64) benign(0.001) TCGA-E7-A519-01 22 39112986 39112987 - T GTPBP1 Frame_Shift_Ins p.D273* 0.19 TCGA-E7-A519-01 22 50649179 50649191 TGCCCCTGGAGCT - SELO Frame_Shift_Del p.L397Rfs*49 0.29 TCGA-E7-A519-01 2 121047205 121047205 G A RALB Missense_Mutation p.V125I 0.33 tolerated(0.05) benign(0.042) TCGA-E7-A519-01 2 166245180 166245180 C T SCN2A Missense_Mutation p.P1622S 0.35 deleterious(0) probably_damaging(0.925) TCGA-E7-A519-01 2 234891724 234891724 C T TRPM8 Missense_Mutation p.L873F 0.34 tolerated(0.08) probably_damaging(0.968) TCGA-E7-A519-01 2 61441772 61441772 C T USP34 Missense_Mutation p.R2702Q 0.22 deleterious(0) probably_damaging(0.974) TCGA-E7-A519-01 2 97261319 97261319 T C KANSL3 3'UTR 0.27 TCGA-E7-A519-01 3 121195572 121195572 G A POLQ Missense_Mutation p.R2074C 0.31 tolerated(0.22) benign(0.001) TCGA-E7-A519-01 3 124732354 124732354 G A HEG1 Missense_Mutation p.S690L 0.40 deleterious(0) possibly_damaging(0.738) TCGA-E7-A519-01 3 136170920 136170920 A G STAG1 Silent p.N461N 0.35 TCGA-E7-A519-01 3 157841741 157841741 A G RSRC1 Missense_Mutation p.Y94C 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-E7-A519-01 3 48500779 48500779 G A ATRIP Missense_Mutation p.R284K 0.17 tolerated(0.7) benign(0.002) TCGA-E7-A519-01 3 62522172 62522172 A T CADPS Missense_Mutation p.M684K 0.33 tolerated(0.36) benign(0.042) TCGA-E7-A519-01 3 73432828 73432828 C T PDZRN3 Silent p.A963A 0.32 TCGA-E7-A519-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.26 deleterious(0.01) possibly_damaging(0.594) TCGA-E7-A519-01 4 1803656 1803656 C T FGFR3 Silent p.Y278Y 0.43 TCGA-E7-A519-01 4 183609317 183609317 A G TENM3 Splice_Site p.X679_splice 0.43 TCGA-E7-A519-01 4 2214798 2214798 C T POLN Silent p.R63R 0.21 TCGA-E7-A519-01 5 110407688 110407688 T A TSLP Missense_Mutation p.C34S 0.34 deleterious(0) probably_damaging(0.996) TCGA-E7-A519-01 5 140745981 140745981 T C PCDHGA5 Missense_Mutation p.V695A 0.36 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-E7-A519-01 5 141335209 141335209 G A PCDH12 Silent p.F736F 0.23 TCGA-E7-A519-01 5 19473496 19473496 A G CDH18 Missense_Mutation p.Y738H 0.26 deleterious(0) probably_damaging(0.998) TCGA-E7-A519-01 6 152702365 152702365 C AG SYNE1 Frame_Shift_Ins p.D2929Lfs*65 0.38 TCGA-E7-A519-01 6 27368192 27368192 G A ZNF391 Missense_Mutation p.E15K 0.41 tolerated(0.69) benign(0.175) TCGA-E7-A519-01 6 29455628 29455628 A G MAS1L Missense_Mutation p.F18L 0.27 deleterious_low_confidence(0) benign(0.153) TCGA-E7-A519-01 6 29599332 29599332 G A GABBR1 Missense_Mutation p.R44W 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A519-01 7 151878427 151878427 G - KMT2C Frame_Shift_Del p.P2173Hfs*22 0.29 TCGA-E7-A519-01 7 21675544 21675544 T A DNAH11 Missense_Mutation p.V1524E 0.27 probably_damaging(0.972) TCGA-E7-A519-01 7 99722552 99722552 G C CNPY4 3'UTR 0.33 TCGA-E7-A519-01 8 122626709 122626709 C A HAS2 Missense_Mutation p.M433I 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-E7-A519-01 8 122626715 122626715 G A HAS2 Silent p.I431I 0.30 TCGA-E7-A519-01 8 30657142 30657142 T C PPP2CB Missense_Mutation p.T78A 0.35 deleterious(0.02) possibly_damaging(0.506) TCGA-E7-A519-01 8 65537041 65537041 G T CYP7B1 Missense_Mutation p.L60M 0.36 tolerated(0.06) benign(0.328) TCGA-E7-A519-01 8 95952430 95952430 G C TP53INP1 Nonsense_Mutation p.S44* 0.33 TCGA-E7-A519-01 9 132591563 132591563 G T C9orf78 Missense_Mutation p.N233K 0.34 tolerated(0.14) benign(0.008) TCGA-E7-A519-01 9 139726772 139726772 G T RABL6 Missense_Mutation p.G220C 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A519-01 X 123179197 123179197 C T STAG2 Nonsense_Mutation p.R216* 0.83 TCGA-E7-A519-01 X 347109 347109 C T PPP2R3B Silent p.T106T 0.23 TCGA-E7-A519-01 X 591822 591822 G C SHOX Missense_Mutation p.G64R 0.44 tolerated_low_confidence(0.33) benign(0.396) TCGA-E7-A519-01 Y 15438105 15438105 A G UTY Missense_Mutation p.I890T 0.71 deleterious(0.02) possibly_damaging(0.905) TCGA-E7-A541-01 10 102112130 102112130 C T SCD Silent p.F106F 0.12 TCGA-E7-A541-01 10 103990735 103990735 G A PITX3 Missense_Mutation p.P149S 0.23 tolerated(0.88) benign(0.216) TCGA-E7-A541-01 10 111630635 111630635 G A XPNPEP1 Missense_Mutation p.S517L 0.10 tolerated(0.06) benign(0.016) TCGA-E7-A541-01 10 124458867 124458867 C G C10orf120 Missense_Mutation p.E80Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-E7-A541-01 10 125780889 125780889 T A CHST15 Missense_Mutation p.K410N 0.11 deleterious(0) possibly_damaging(0.756) TCGA-E7-A541-01 10 23244787 23244787 C G ARMC3 Missense_Mutation p.T73S 0.24 tolerated(0.4) benign(0.057) TCGA-E7-A541-01 10 34649142 34649142 C T PARD3 Missense_Mutation p.E585K 0.12 deleterious(0) possibly_damaging(0.889) TCGA-E7-A541-01 10 50944492 50944492 A G OGDHL Missense_Mutation p.F889L 0.06 tolerated(0.8) benign(0.006) TCGA-E7-A541-01 10 6143264 6143264 G A RBM17 Missense_Mutation p.A52T 0.24 tolerated(0.17) benign(0.23) TCGA-E7-A541-01 10 6274866 6274866 A G PFKFB3 Silent p.K508K 0.05 TCGA-E7-A541-01 10 64136366 64136366 G A ZNF365 Silent p.S138S 0.10 TCGA-E7-A541-01 10 64958443 64958443 G C JMJD1C Missense_Mutation p.S1774C 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A541-01 10 64974510 64974510 G T JMJD1C Missense_Mutation p.H473N 0.08 tolerated_low_confidence(0.56) benign(0.001) TCGA-E7-A541-01 10 75562822 75562822 C A NDST2 Silent p.G777G 0.14 TCGA-E7-A541-01 10 76285094 76285094 G A ADK Silent p.L212L 0.10 TCGA-E7-A541-01 10 8100439 8100439 C T GATA3 Missense_Mutation p.S138F 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-E7-A541-01 10 88441526 88441526 C T LDB3 Nonsense_Mutation p.R219* 0.11 TCGA-E7-A541-01 10 93841145 93841145 G A CPEB3 Nonsense_Mutation p.Q601* 0.32 TCGA-E7-A541-01 10 98118719 98118719 T C OPALIN 5'UTR 0.11 TCGA-E7-A541-01 10 99623773 99623773 C T GOLGA7B Silent p.L75L 0.11 TCGA-E7-A541-01 11 101353689 101353689 A C TRPC6 Missense_Mutation p.W501G 0.08 deleterious(0) possibly_damaging(0.86) TCGA-E7-A541-01 11 10673680 10673680 C G MRVI1 Missense_Mutation p.E39D 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.605) TCGA-E7-A541-01 11 113283349 113283349 T C DRD2 Missense_Mutation p.K356R 0.10 tolerated(0.23) benign(0.096) TCGA-E7-A541-01 11 116691982 116691982 C T APOA4 Silent p.R264R 0.14 TCGA-E7-A541-01 11 118342480 118342481 AG - KMT2A Frame_Shift_Del p.E203Dfs*6 0.09 TCGA-E7-A541-01 11 119549200 119549200 C A PVRL1 Nonsense_Mutation p.E119* 0.12 TCGA-E7-A541-01 11 123847718 123847718 G A OR10S1 Silent p.L227L 0.17 TCGA-E7-A541-01 11 1298402 1298402 T C TOLLIP Missense_Mutation p.E231G 0.08 deleterious(0) benign(0.011) TCGA-E7-A541-01 11 1491571 1491571 A G MOB2 Missense_Mutation p.F213S 0.07 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 11 17530938 17530938 G C USH1C Missense_Mutation p.P660A 0.12 tolerated_low_confidence(0.1) benign(0.236) TCGA-E7-A541-01 11 33117905 33117905 C A CSTF3 Missense_Mutation p.G441V 0.10 deleterious(0.02) possibly_damaging(0.747) TCGA-E7-A541-01 11 45246182 45246182 C T PRDM11 Missense_Mutation p.S386L 0.12 tolerated_low_confidence(0.38) benign(0.002) TCGA-E7-A541-01 11 47819339 47819339 T A NUP160 Missense_Mutation p.Y1094F 0.08 tolerated(0.16) benign(0.102) TCGA-E7-A541-01 11 5269630 5269630 C G HBG1 Missense_Mutation p.V135L 0.11 tolerated(0.58) benign(0.005) TCGA-E7-A541-01 11 55904524 55904524 G C OR8J3 Missense_Mutation p.S224C 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-E7-A541-01 11 55944458 55944458 G T OR5J2 Missense_Mutation p.R122L 0.16 deleterious(0) possibly_damaging(0.908) TCGA-E7-A541-01 11 64535215 64535215 G A SF1 Silent p.P515P 0.23 TCGA-E7-A541-01 11 65810699 65810699 C T GAL3ST3 Missense_Mutation p.R192H 0.12 tolerated(0.26) probably_damaging(0.971) TCGA-E7-A541-01 11 6789858 6789858 C G OR2AG2 Missense_Mutation p.E111Q 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 11 68475730 68475730 G A MTL5 3'UTR 0.18 TCGA-E7-A541-01 11 68835030 68835030 G A TPCN2 Silent p.L262L 0.05 TCGA-E7-A541-01 11 74717559 74717559 A G NEU3 3'UTR 0.08 TCGA-E7-A541-01 11 85436299 85436299 T G SYTL2 Missense_Mutation p.N401H 0.09 deleterious(0.05) possibly_damaging(0.8) TCGA-E7-A541-01 11 86126190 86126190 T C CCDC81 Missense_Mutation p.I509T 0.11 deleterious(0) probably_damaging(0.972) TCGA-E7-A541-01 11 88583170 88583170 C T GRM5 Missense_Mutation p.R272Q 0.14 tolerated(0.14) probably_damaging(0.937) TCGA-E7-A541-01 11 94231251 94231251 G C ANKRD49 Silent p.R91R 0.35 TCGA-E7-A541-01 12 10215805 10215805 G T CLEC9A Missense_Mutation p.M157I 0.09 deleterious(0.01) probably_damaging(0.936) TCGA-E7-A541-01 12 104327862 104327862 A G HSP90B1 Silent p.E180E 0.09 TCGA-E7-A541-01 12 105546199 105546199 G T KIAA1033 Missense_Mutation p.D910Y 0.21 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 12 107080766 107080766 T G RFX4 Missense_Mutation p.V170G 0.05 tolerated(0.19) benign(0.079) TCGA-E7-A541-01 12 112140109 112140109 G C ACAD10 Missense_Mutation p.E111Q 0.14 deleterious(0.04) possibly_damaging(0.844) TCGA-E7-A541-01 12 117665412 117665412 T C NOS1 Missense_Mutation p.K1181R 0.21 tolerated(0.8) benign(0.007) TCGA-E7-A541-01 12 120760103 120760104 CA - PLA2G1B Nonsense_Mutation p.C113* 0.10 TCGA-E7-A541-01 12 120990433 120990433 T C RNF10 Silent p.H162H 0.08 TCGA-E7-A541-01 12 123497265 123497265 C T PITPNM2 Missense_Mutation p.V104M 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A541-01 12 124229255 124229255 G T ATP6V0A2 Missense_Mutation p.G480C 0.18 deleterious(0) probably_damaging(0.998) TCGA-E7-A541-01 12 130912880 130912880 C T RIMBP2 Silent p.P735P 0.16 TCGA-E7-A541-01 12 13208678 13208678 C G KIAA1467 Silent p.V77V 0.09 TCGA-E7-A541-01 12 132334459 132334459 C A MMP17 Missense_Mutation p.H439Q 0.08 tolerated(0.15) benign(0.213) TCGA-E7-A541-01 12 305972 305972 G C SLC6A12 Missense_Mutation p.F384L 0.14 deleterious(0) probably_damaging(0.996) TCGA-E7-A541-01 12 32994113 32994113 C T PKP2 Missense_Mutation p.D513N 0.07 deleterious(0.02) probably_damaging(0.947) TCGA-E7-A541-01 12 4479840 4479840 T C FGF23 Missense_Mutation p.K142R 0.08 tolerated(0.25) possibly_damaging(0.762) TCGA-E7-A541-01 12 48360480 48360480 G A TMEM106C Silent p.G189G 0.08 TCGA-E7-A541-01 12 49578810 49578810 C T TUBA1A Missense_Mutation p.E447K 0.10 deleterious_low_confidence(0.03) unknown(0) TCGA-E7-A541-01 12 49582774 49582774 C T TUBA1A 5'UTR 0.06 TCGA-E7-A541-01 12 50501349 50501349 G A GPD1 Splice_Site p.X205_splice 0.11 TCGA-E7-A541-01 12 51634718 51634718 C T DAZAP2 Missense_Mutation p.P66S 0.18 deleterious_low_confidence(0.02) benign(0.225) TCGA-E7-A541-01 12 52056620 52056620 G C SCN8A Missense_Mutation p.A7P 0.06 tolerated_low_confidence(0.33) possibly_damaging(0.593) TCGA-E7-A541-01 12 52627115 52627115 C T KRT7 Missense_Mutation p.S12L 0.15 deleterious_low_confidence(0.04) benign(0.427) TCGA-E7-A541-01 12 53686072 53686072 C T ESPL1 Missense_Mutation p.S1936L 0.15 tolerated(0.05) benign(0.426) TCGA-E7-A541-01 12 53687250 53687250 C T ESPL1 Silent p.L2119L 0.10 TCGA-E7-A541-01 12 56087038 56087038 G - ITGA7 Frame_Shift_Del p.H871Mfs*125 0.10 TCGA-E7-A541-01 12 56478817 56478817 G A ERBB3 Missense_Mutation p.M91I 0.14 tolerated(0.23) benign(0.082) TCGA-E7-A541-01 12 57919411 57919411 C T MBD6 Silent p.I220I 0.08 TCGA-E7-A541-01 12 6457957 6457957 G A SCNN1A Missense_Mutation p.A581V 0.11 deleterious(0) probably_damaging(0.975) TCGA-E7-A541-01 12 6682374 6682374 G C CHD4 Nonsense_Mutation p.S1808* 0.09 TCGA-E7-A541-01 12 6958960 6958960 T C CDCA3 Missense_Mutation p.N105D 0.14 tolerated(0.51) benign(0.004) TCGA-E7-A541-01 12 71834033 71834033 C T LGR5 Missense_Mutation p.S58L 0.37 tolerated(0.06) benign(0.129) TCGA-E7-A541-01 12 81101955 81101955 C T MYF6 Nonsense_Mutation p.Q153* 0.16 TCGA-E7-A541-01 12 8374915 8374915 C A FAM90A1 Missense_Mutation p.A300S 0.07 tolerated(0.45) benign(0.051) TCGA-E7-A541-01 12 8375060 8375060 G C FAM90A1 Silent p.L251L 0.07 TCGA-E7-A541-01 12 94575253 94575253 G A PLXNC1 Missense_Mutation p.C412Y 0.05 deleterious(0) possibly_damaging(0.608) TCGA-E7-A541-01 12 94603380 94603380 G A PLXNC1 Missense_Mutation p.G485E 0.06 tolerated(1) benign(0.001) TCGA-E7-A541-01 13 100193821 100193821 A C TM9SF2 Missense_Mutation p.N306T 0.09 deleterious(0) probably_damaging(0.976) TCGA-E7-A541-01 13 26138101 26138101 C T ATP8A2 Missense_Mutation p.P469S 0.10 tolerated(0.3) benign(0.043) TCGA-E7-A541-01 13 31232303 31232303 G A USPL1 Missense_Mutation p.E697K 0.18 tolerated(0.06) benign(0.045) TCGA-E7-A541-01 13 31531161 31531161 C G TEX26 Nonsense_Mutation p.S155* 0.07 TCGA-E7-A541-01 13 32907442 32907442 A C BRCA2 Missense_Mutation p.Q609H 0.17 deleterious(0.01) probably_damaging(0.922) TCGA-E7-A541-01 13 41345211 41345211 G A MRPS31 Missense_Mutation p.S21F 0.15 tolerated_low_confidence(0.64) benign(0.022) TCGA-E7-A541-01 13 45580386 45580386 T C GPALPP1 Missense_Mutation p.F91L 0.04 tolerated(0.08) benign(0.111) TCGA-E7-A541-01 13 45768192 45768192 G A KCTD4 Missense_Mutation p.R171C 0.19 deleterious(0) probably_damaging(0.99) TCGA-E7-A541-01 13 51948860 51948860 A C INTS6 Missense_Mutation p.L601R 0.11 deleterious(0) probably_damaging(0.998) TCGA-E7-A541-01 13 73573052 73573052 G C PIBF1 Silent p.V714V 0.20 TCGA-E7-A541-01 13 74420094 74420094 C T KLF12 Silent p.L180L 0.11 TCGA-E7-A541-01 13 99515644 99515644 C T DOCK9 Missense_Mutation p.D1149N 0.12 deleterious(0) possibly_damaging(0.906) TCGA-E7-A541-01 13 99540715 99540715 G A DOCK9 Missense_Mutation p.P626S 0.10 tolerated(0.31) probably_damaging(0.999) TCGA-E7-A541-01 14 100847804 100847804 A G WDR25 Silent p.L181L 0.11 TCGA-E7-A541-01 14 105408983 105408983 C T AHNAK2 Missense_Mutation p.E4269K 0.17 benign(0.107) TCGA-E7-A541-01 14 19553618 19553618 T C POTEG Missense_Mutation p.C68R 0.02 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-E7-A541-01 14 21961254 21961254 C G TOX4 Missense_Mutation p.I493M 0.06 deleterious(0) benign(0.063) TCGA-E7-A541-01 14 21992532 21992532 C G SALL2 Missense_Mutation p.V444L 0.10 deleterious(0) benign(0.11) TCGA-E7-A541-01 14 22671041 22671041 C A TRAV26-2 Missense_Mutation p.H36N 0.16 tolerated(1) benign(0.002) TCGA-E7-A541-01 14 24653252 24653252 C G IPO4 Missense_Mutation p.Q607H 0.07 tolerated(0.09) benign(0.139) TCGA-E7-A541-01 14 24679577 24679577 G C CHMP4A Missense_Mutation p.S239C 0.05 deleterious(0) possibly_damaging(0.897) TCGA-E7-A541-01 14 35245311 35245311 G A BAZ1A Missense_Mutation p.P883S 0.06 deleterious(0.05) probably_damaging(0.968) TCGA-E7-A541-01 14 57271040 57271040 G A OTX2 Missense_Mutation p.R47C 0.11 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 14 58785309 58785309 G C ARID4A Silent p.L108L 0.10 TCGA-E7-A541-01 14 71445300 71445300 C T PCNX Missense_Mutation p.S749F 0.08 deleterious(0) probably_damaging(0.986) TCGA-E7-A541-01 14 73739335 73739335 C T PAPLN Missense_Mutation p.S1240L 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-E7-A541-01 14 88883077 88883077 G A SPATA7 Silent p.E87E 0.25 TCGA-E7-A541-01 14 94929577 94929577 A T SERPINA9 Silent p.A387A 0.18 TCGA-E7-A541-01 14 96771947 96771947 G A ATG2B Missense_Mutation p.T1571I 0.12 tolerated(0.4) benign(0.001) TCGA-E7-A541-01 15 25296636 25296636 A G SNORD116-1 RNA 0.06 TCGA-E7-A541-01 15 28377945 28377945 G C HERC2 Missense_Mutation p.L4088V 0.04 possibly_damaging(0.651) TCGA-E7-A541-01 15 34032094 34032094 T A RYR3 Nonsense_Mutation p.L2573* 0.33 TCGA-E7-A541-01 15 39875829 39875829 G A THBS1 Silent p.Q213Q 0.12 TCGA-E7-A541-01 15 59455471 59455471 C T MYO1E Missense_Mutation p.E838K 0.10 tolerated(0.5) possibly_damaging(0.7) TCGA-E7-A541-01 15 60747337 60747337 C G NARG2 Missense_Mutation p.E270Q 0.12 deleterious(0.01) possibly_damaging(0.548) TCGA-E7-A541-01 15 71953019 71953019 G T THSD4 Nonsense_Mutation p.E435* 0.08 TCGA-E7-A541-01 15 72170547 72170547 T A MYO9A Missense_Mutation p.Y1922F 0.20 deleterious(0) probably_damaging(0.997) TCGA-E7-A541-01 15 81625498 81625498 A T TMC3 Silent p.L855L 0.10 TCGA-E7-A541-01 15 83699063 83699063 T A BTBD1 Missense_Mutation p.I294F 0.06 deleterious(0) possibly_damaging(0.825) TCGA-E7-A541-01 15 90623014 90623015 CT - ZNF710 Frame_Shift_Del p.L650Hfs*2 0.14 TCGA-E7-A541-01 16 10524847 10524847 G A ATF7IP2 Missense_Mutation p.E124K 0.09 tolerated(0.09) benign(0.107) TCGA-E7-A541-01 16 19522209 19522209 T C GDE1 Silent p.L165L 0.14 TCGA-E7-A541-01 16 20999133 20999133 T G DNAH3 Missense_Mutation p.Y2255S 0.11 deleterious(0) probably_damaging(0.988) TCGA-E7-A541-01 16 27457362 27457362 G C IL21R Missense_Mutation p.E274Q 0.08 tolerated(0.16) benign(0.109) TCGA-E7-A541-01 16 2813692 2813692 C G SRRM2 Missense_Mutation p.L1055V 0.10 unknown(0) TCGA-E7-A541-01 16 29088013 29088013 C A RRN3P2 RNA 0.10 TCGA-E7-A541-01 16 29990321 29990321 G C TAOK2 Missense_Mutation p.E127Q 0.05 tolerated(0.05) possibly_damaging(0.745) TCGA-E7-A541-01 16 30100485 30100485 C T TBX6 Missense_Mutation p.E134K 0.19 tolerated(0.76) probably_damaging(0.998) TCGA-E7-A541-01 16 30490457 30490457 C G ITGAL Missense_Mutation p.L125V 0.09 tolerated(0.74) benign(0.109) TCGA-E7-A541-01 16 30594232 30594232 G A ZNF785 Silent p.C289C 0.20 TCGA-E7-A541-01 16 3339568 3339568 G A ZNF263 Silent p.E354E 0.13 TCGA-E7-A541-01 16 48122530 48122530 G A ABCC12 Missense_Mutation p.P1134L 0.09 deleterious(0.01) probably_damaging(0.958) TCGA-E7-A541-01 16 50257146 50257146 T C PAPD5 Missense_Mutation p.F395S 0.18 deleterious(0) probably_damaging(0.987) TCGA-E7-A541-01 16 55735826 55735826 A T SLC6A2 Missense_Mutation p.R604W 0.09 deleterious(0.01) possibly_damaging(0.566) TCGA-E7-A541-01 16 58592418 58592418 G C CNOT1 Missense_Mutation p.T764S 0.22 tolerated(0.37) benign(0.055) TCGA-E7-A541-01 16 66586562 66586562 C G CKLF-CMTM1 5'UTR 0.07 TCGA-E7-A541-01 16 68293237 68293237 G C PLA2G15 Missense_Mutation p.D306H 0.06 deleterious(0) probably_damaging(0.987) TCGA-E7-A541-01 16 75675485 75675485 C G KARS Missense_Mutation p.E95Q 0.25 tolerated(0.06) benign(0.015) TCGA-E7-A541-01 16 7647391 7647391 C T RBFOX1 Missense_Mutation p.R214C 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-E7-A541-01 16 82032764 82032764 A G SDR42E1 Silent p.I378I 0.08 TCGA-E7-A541-01 16 89261552 89261552 C T CDH15 Missense_Mutation p.R812W 0.21 deleterious_low_confidence(0) benign(0) TCGA-E7-A541-01 17 10101673 10101673 A C GAS7 Missense_Mutation p.F12C 0.14 deleterious(0) possibly_damaging(0.866) TCGA-E7-A541-01 17 11543686 11543686 G A DNAH9 Missense_Mutation p.G629E 0.08 benign(0.004) TCGA-E7-A541-01 17 1563243 1563243 G T PRPF8 Missense_Mutation p.T1613K 0.08 deleterious(0) possibly_damaging(0.703) TCGA-E7-A541-01 17 17150824 17150824 C G COPS3 Missense_Mutation p.E396D 0.08 tolerated(0.23) benign(0.028) TCGA-E7-A541-01 17 18145214 18145214 C T LLGL1 Missense_Mutation p.S928F 0.08 deleterious(0) probably_damaging(0.984) TCGA-E7-A541-01 17 27233253 27233253 A C PHF12 Missense_Mutation p.L988R 0.15 tolerated(0.52) possibly_damaging(0.741) TCGA-E7-A541-01 17 29161731 29161731 G C ATAD5 Missense_Mutation p.R211T 0.10 deleterious(0.03) benign(0.211) TCGA-E7-A541-01 17 30349792 30349792 C T LRRC37B Missense_Mutation p.R543C 0.09 tolerated(0.07) benign(0.066) TCGA-E7-A541-01 17 34044340 34044340 G T AP2B1 Missense_Mutation p.R918L 0.09 tolerated(0.07) benign(0.17) TCGA-E7-A541-01 17 40049372 40049372 C T ACLY Silent p.Q505Q 0.11 TCGA-E7-A541-01 17 42272800 42272800 C G ATXN7L3 Missense_Mutation p.S210T 0.08 tolerated(0.78) benign(0.002) TCGA-E7-A541-01 17 4434016 4434016 C G SPNS2 Silent p.L221L 0.12 TCGA-E7-A541-01 17 46262211 46262211 T A SKAP1 Splice_Site p.X148_splice 0.09 TCGA-E7-A541-01 17 48356312 48356312 G C TMEM92 Missense_Mutation p.E107D 0.17 deleterious(0.04) possibly_damaging(0.858) TCGA-E7-A541-01 17 56389358 56389358 G C BZRAP1 Missense_Mutation p.Q942E 0.06 tolerated(0.94) possibly_damaging(0.594) TCGA-E7-A541-01 17 56620976 56620976 C T C17orf47 Missense_Mutation p.R191H 0.06 deleterious(0.04) probably_damaging(0.923) TCGA-E7-A541-01 17 62018282 62018282 C T SCN4A Missense_Mutation p.S1787N 0.47 tolerated_low_confidence(0.06) benign(0) TCGA-E7-A541-01 17 62018713 62018713 G A SCN4A Silent p.F1643F 0.09 TCGA-E7-A541-01 17 62499213 62499213 C T DDX5 Missense_Mutation p.D272N 0.07 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 17 62856301 62856301 G A LRRC37A3 Silent p.V1321V 0.08 TCGA-E7-A541-01 17 63537671 63537671 C T AXIN2 Missense_Mutation p.G321R 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-E7-A541-01 17 66033601 66033601 G A KPNA2 Missense_Mutation p.R68H 0.15 tolerated(0.19) benign(0.005) TCGA-E7-A541-01 17 66446938 66446938 G A WIPI1 Silent p.F88F 0.07 TCGA-E7-A541-01 17 66519059 66519059 G C PRKAR1A Missense_Mutation p.V114L 0.05 tolerated(0.21) benign(0.001) TCGA-E7-A541-01 17 66899001 66899001 C T ABCA8 Missense_Mutation p.G833R 0.09 tolerated(0.29) possibly_damaging(0.695) TCGA-E7-A541-01 17 73998200 73998200 G A CDK3 Missense_Mutation p.E98K 0.12 tolerated(0.84) benign(0.005) TCGA-E7-A541-01 17 74300990 74300990 C T QRICH2 Silent p.K23K 0.13 TCGA-E7-A541-01 17 76462763 76462763 A C DNAH17 Missense_Mutation p.F2958V 0.10 probably_damaging(0.983) TCGA-E7-A541-01 17 80007647 80007647 T A RFNG Missense_Mutation p.E245V 0.13 deleterious(0) probably_damaging(0.962) TCGA-E7-A541-01 17 8218755 8218755 C T ARHGEF15 Silent p.S428S 0.15 TCGA-E7-A541-01 18 12680676 12680676 C G CEP76 Missense_Mutation p.S425T 0.06 deleterious(0) probably_damaging(0.973) TCGA-E7-A541-01 18 19378188 19378188 T A MIB1 Silent p.G412G 0.09 TCGA-E7-A541-01 18 21390405 21390405 G C LAMA3 Missense_Mutation p.G560A 0.14 probably_damaging(0.976) TCGA-E7-A541-01 18 22804566 22804566 C G ZNF521 Missense_Mutation p.G1106R 0.10 tolerated(0.09) benign(0.008) TCGA-E7-A541-01 18 2697888 2697888 C T SMCHD1 Silent p.D397D 0.30 TCGA-E7-A541-01 18 47918515 47918515 G C SKA1 Missense_Mutation p.L222F 0.09 deleterious(0.01) possibly_damaging(0.629) TCGA-E7-A541-01 18 61379857 61379857 A C SERPINB11 Missense_Mutation p.Q96P 0.13 deleterious(0.03) benign(0.032) TCGA-E7-A541-01 19 10394962 10394962 G C ICAM1 Missense_Mutation p.Q297H 0.14 deleterious(0.03) benign(0.166) TCGA-E7-A541-01 19 10402264 10402264 C T ICAM5 Missense_Mutation p.A151V 0.11 tolerated(0.17) benign(0.012) TCGA-E7-A541-01 19 10625683 10625683 T G S1PR5 Missense_Mutation p.E2A 0.10 deleterious_low_confidence(0.01) benign(0.257) TCGA-E7-A541-01 19 10655699 10655699 C T ATG4D Missense_Mutation p.P129L 0.06 deleterious(0) possibly_damaging(0.842) TCGA-E7-A541-01 19 10904517 10904517 T C DNM2 Missense_Mutation p.F372L 0.09 tolerated(0.11) benign(0.097) TCGA-E7-A541-01 19 12256579 12256579 G A ZNF625 Missense_Mutation p.P218S 0.49 deleterious(0.02) probably_damaging(0.91) TCGA-E7-A541-01 19 1272508 1272508 G A CIRBP 3'UTR 0.09 TCGA-E7-A541-01 19 14862400 14862400 G A EMR2 Silent p.L624L 0.14 TCGA-E7-A541-01 19 15510178 15510178 C T AKAP8L Silent p.K364K 0.09 TCGA-E7-A541-01 19 16038028 16038028 G A CYP4F11 Silent p.I173I 0.09 TCGA-E7-A541-01 19 16976281 16976281 A T SIN3B Nonsense_Mutation p.K514* 0.13 TCGA-E7-A541-01 19 18779024 18779024 G A KLHL26 Missense_Mutation p.E273K 0.06 tolerated(0.14) benign(0.345) TCGA-E7-A541-01 19 19654133 19654133 G C CILP2 Missense_Mutation p.D352H 0.06 tolerated(0.14) benign(0.006) TCGA-E7-A541-01 19 21541880 21541880 C G ZNF738 5'UTR 0.14 TCGA-E7-A541-01 19 22256321 22256321 G A ZNF257 Missense_Mutation p.E61K 0.17 tolerated(0.18) benign(0.043) TCGA-E7-A541-01 19 22941019 22941019 T G ZNF99 Silent p.P564P 0.11 TCGA-E7-A541-01 19 2917012 2917012 G C ZNF57 Missense_Mutation p.K131N 0.09 deleterious(0.04) benign(0.041) TCGA-E7-A541-01 19 35250194 35250194 C G ZNF599 Missense_Mutation p.E504D 0.08 deleterious(0) probably_damaging(0.938) TCGA-E7-A541-01 19 35739844 35739844 C T LSR Silent p.H21H 0.07 TCGA-E7-A541-01 19 36027889 36027889 A G GAPDHS Missense_Mutation p.N81S 0.43 deleterious_low_confidence(0.01) benign(0.116) TCGA-E7-A541-01 19 39062779 39062779 G A RYR1 Missense_Mutation p.D4623N 0.05 unknown(0) TCGA-E7-A541-01 19 39868164 39868164 G T SAMD4B Nonsense_Mutation p.E382* 0.07 TCGA-E7-A541-01 19 40357495 40357495 G A FCGBP Missense_Mutation p.P5273L 0.10 probably_damaging(0.99) TCGA-E7-A541-01 19 40519756 40519756 T C ZNF546 Silent p.V193V 0.19 TCGA-E7-A541-01 19 42221427 42221427 G A CEACAM5 Missense_Mutation p.E338K 0.10 tolerated(1) unknown(0) TCGA-E7-A541-01 19 42474606 42474606 G C ATP1A3 Missense_Mutation p.I797M 0.07 deleterious(0.04) possibly_damaging(0.653) TCGA-E7-A541-01 19 42752824 42752824 G C ERF Silent p.L480L 0.05 TCGA-E7-A541-01 19 44589969 44589969 G C ZNF284 Missense_Mutation p.R113T 0.19 deleterious(0.03) possibly_damaging(0.689) TCGA-E7-A541-01 19 47423872 47423872 C T ARHGAP35 Missense_Mutation p.P647L 0.12 tolerated(0.53) probably_damaging(0.999) TCGA-E7-A541-01 19 48789575 48789575 G A ZNF114 Missense_Mutation p.E232K 0.10 tolerated(0.13) benign(0.292) TCGA-E7-A541-01 19 49526183 49526183 C A CGB Missense_Mutation p.R153L 0.58 tolerated_low_confidence(0.05) benign(0.06) TCGA-E7-A541-01 19 50195610 50195610 C G CPT1C Missense_Mutation p.S34C 0.18 deleterious(0.02) benign(0.038) TCGA-E7-A541-01 19 52918982 52918982 G A ZNF528 Missense_Mutation p.G293R 0.07 deleterious(0.01) probably_damaging(0.913) TCGA-E7-A541-01 19 53056488 53056488 G A ZNF808 Missense_Mutation p.E107K 0.09 tolerated(0.22) benign(0.012) TCGA-E7-A541-01 19 53304096 53304096 T G ZNF28 Missense_Mutation p.K334N 0.08 deleterious(0) possibly_damaging(0.681) TCGA-E7-A541-01 19 55263956 55263956 A C KIR2DL3 Silent p.P337P 0.05 TCGA-E7-A541-01 19 56459261 56459261 G A NLRP8 5'UTR 0.09 TCGA-E7-A541-01 19 56511123 56511123 C G NLRP5 Missense_Mutation p.A11G 0.07 tolerated_low_confidence(0.11) unknown(0) TCGA-E7-A541-01 19 58152255 58152255 G C ZNF211 Missense_Mutation p.G199A 0.09 tolerated(0.64) benign(0.342) TCGA-E7-A541-01 19 58196669 58196669 G A ZNF551 Missense_Mutation p.E41K 0.06 tolerated(0.15) benign(0.299) TCGA-E7-A541-01 19 58196672 58196672 G T ZNF551 Nonsense_Mutation p.E42* 0.06 TCGA-E7-A541-01 19 58197940 58197940 G C ZNF551 Missense_Mutation p.Q99H 0.09 deleterious(0) probably_damaging(0.99) TCGA-E7-A541-01 19 58213777 58213777 C A ZNF154 Missense_Mutation p.W180C 0.10 deleterious(0.04) probably_damaging(0.943) TCGA-E7-A541-01 19 58455312 58455312 T G ZNF256 Silent p.T50T 0.10 TCGA-E7-A541-01 19 58967549 58967549 T G ZNF324B Missense_Mutation p.F413C 0.05 deleterious(0.03) probably_damaging(0.987) TCGA-E7-A541-01 19 7621361 7621361 C T PNPLA6 Missense_Mutation p.P1049L 0.06 tolerated(0.14) benign(0.01) TCGA-E7-A541-01 19 8564616 8564616 G C PRAM1 Missense_Mutation p.Q26E 0.14 deleterious(0.04) benign(0.007) TCGA-E7-A541-01 19 9006761 9006761 C T MUC16 Missense_Mutation p.G13163S 0.07 possibly_damaging(0.867) TCGA-E7-A541-01 19 9063025 9063025 C G MUC16 Missense_Mutation p.V8141L 0.11 unknown(0) TCGA-E7-A541-01 1 100343382 100343382 G A AGL Missense_Mutation p.E537K 0.17 deleterious(0) probably_damaging(0.986) TCGA-E7-A541-01 1 110086402 110086402 G A GPR61 Missense_Mutation p.R253Q 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-E7-A541-01 1 114380271 114380271 A G PTPN22 Missense_Mutation p.L584S 0.08 tolerated(0.18) benign(0.249) TCGA-E7-A541-01 1 114454622 114454622 A G DCLRE1B Missense_Mutation p.T470A 0.06 tolerated_low_confidence(0.24) benign(0.02) TCGA-E7-A541-01 1 1147362 1147362 G T TNFRSF4 Silent p.T198T 0.13 TCGA-E7-A541-01 1 117699447 117699447 G C VTCN1 Missense_Mutation p.S65C 0.10 deleterious(0.02) possibly_damaging(0.726) TCGA-E7-A541-01 1 118461276 118461276 C G GDAP2 Missense_Mutation p.E87Q 0.15 tolerated(0.33) benign(0.379) TCGA-E7-A541-01 1 120307235 120307235 G A HMGCS2 Missense_Mutation p.S40F 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.526) TCGA-E7-A541-01 1 1387445 1387445 T C ATAD3C Missense_Mutation p.L32S 0.15 deleterious(0.02) benign(0.156) TCGA-E7-A541-01 1 144994622 144994622 T C PDE4DIP Missense_Mutation p.Y37C 0.04 tolerated(0.06) benign(0.067) TCGA-E7-A541-01 1 145586822 145586822 C T NUDT17 Nonsense_Mutation p.W289* 0.06 TCGA-E7-A541-01 1 148341960 148341960 C T NBPF20 Missense_Mutation p.E205K 0.05 possibly_damaging(0.631) TCGA-E7-A541-01 1 149880779 149880779 C G SV2A Silent p.L448L 0.05 TCGA-E7-A541-01 1 153303257 153303257 G A PGLYRP4 Missense_Mutation p.H370Y 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-E7-A541-01 1 156170116 156170116 G C SLC25A44 Missense_Mutation p.V160L 0.10 tolerated(0.82) benign(0.001) TCGA-E7-A541-01 1 1565853 1565853 C G MIB2 Silent p.L1052L 0.19 TCGA-E7-A541-01 1 15817652 15817652 C G CASP9 3'Flank 0.30 TCGA-E7-A541-01 1 158607882 158607882 T A SPTA1 Missense_Mutation p.K1710N 0.08 tolerated(1) probably_damaging(1) TCGA-E7-A541-01 1 159175832 159175832 G A DARC Silent p.T203T 0.17 TCGA-E7-A541-01 1 160183228 160183229 CT - PEA15 Frame_Shift_Del p.S116* 0.13 TCGA-E7-A541-01 1 17046588 17046588 A T ESPNP RNA 0.04 TCGA-E7-A541-01 1 17328855 17328855 C T ATP13A2 Missense_Mutation p.G191S 0.24 tolerated(0.12) benign(0.191) TCGA-E7-A541-01 1 176525734 176525734 A T PAPPA2 Silent p.T92T 0.09 TCGA-E7-A541-01 1 17682562 17682562 C G PADI4 Missense_Mutation p.D465E 0.13 tolerated(0.08) probably_damaging(1) TCGA-E7-A541-01 1 177001607 177001607 T C ASTN1 Missense_Mutation p.M284V 0.07 tolerated_low_confidence(0.08) benign(0.018) TCGA-E7-A541-01 1 179077194 179077194 T C ABL2 Missense_Mutation p.R1070G 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A541-01 1 180945651 180945651 C T STX6 3'UTR 0.13 TCGA-E7-A541-01 1 18152615 18152615 G C ACTL8 Missense_Mutation p.E234D 0.07 tolerated(0.09) benign(0.01) TCGA-E7-A541-01 1 186038817 186038817 C G HMCN1 Silent p.L2634L 0.09 TCGA-E7-A541-01 1 186057744 186057744 C G HMCN1 Missense_Mutation p.S3195C 0.26 probably_damaging(0.975) TCGA-E7-A541-01 1 186277970 186277970 T C PRG4 Missense_Mutation p.M1040T 0.07 unknown(0) TCGA-E7-A541-01 1 186314737 186314737 T G TPR Missense_Mutation p.Q1063P 0.07 benign(0.418) TCGA-E7-A541-01 1 186368154 186368154 G A C1orf27 Silent p.L326L 0.18 TCGA-E7-A541-01 1 190067725 190067725 G T BRINP3 Missense_Mutation p.P575H 0.10 deleterious(0) probably_damaging(0.998) TCGA-E7-A541-01 1 197070086 197070086 C T ASPM Silent p.K2765K 0.15 TCGA-E7-A541-01 1 197071385 197071385 T A ASPM Silent p.R2332R 0.12 TCGA-E7-A541-01 1 198721849 198721849 T G PTPRC Missense_Mutation p.S1153A 0.10 tolerated(0.67) benign(0.02) TCGA-E7-A541-01 1 201008970 201008970 G C CACNA1S Missense_Mutation p.P1871A 0.08 tolerated_low_confidence(0.18) benign(0.014) TCGA-E7-A541-01 1 201777932 201777932 A C NAV1 Missense_Mutation p.L1380F 0.10 tolerated(0.7) benign(0.183) TCGA-E7-A541-01 1 205053403 205053403 C G TMEM81 Missense_Mutation p.A16P 0.12 deleterious(0.01) possibly_damaging(0.642) TCGA-E7-A541-01 1 205592849 205592849 C T ELK4 Missense_Mutation p.M54I 0.07 deleterious(0) probably_damaging(0.976) TCGA-E7-A541-01 1 207751290 207751290 G C CR1 Missense_Mutation p.E1560Q 0.05 tolerated(0.11) possibly_damaging(0.534) TCGA-E7-A541-01 1 213037120 213037120 G A FLVCR1 Silent p.Q264Q 0.15 TCGA-E7-A541-01 1 213290744 213290744 G A RPS6KC1 Missense_Mutation p.S155N 0.12 deleterious(0.02) benign(0.01) TCGA-E7-A541-01 1 222903018 222903018 C G BROX Missense_Mutation p.I271M 0.33 deleterious(0) probably_damaging(0.939) TCGA-E7-A541-01 1 22333488 22333488 C T CELA3A Silent p.T160T 0.17 TCGA-E7-A541-01 1 226567695 226567695 C T PARP1 Missense_Mutation p.E491K 0.17 tolerated(0.41) benign(0.001) TCGA-E7-A541-01 1 228289058 228289058 G A C1orf35 Missense_Mutation p.S217F 0.08 deleterious(0.01) benign(0.06) TCGA-E7-A541-01 1 228437875 228437875 G C OBSCN Missense_Mutation p.A1507P 0.09 possibly_damaging(0.722) TCGA-E7-A541-01 1 228475878 228475878 G A OBSCN Missense_Mutation p.E3739K 0.09 benign(0.134) TCGA-E7-A541-01 1 228481969 228481969 G C OBSCN Missense_Mutation p.E4179Q 0.06 possibly_damaging(0.652) TCGA-E7-A541-01 1 232581473 232581473 G A SIPA1L2 Missense_Mutation p.T1052I 0.29 tolerated(0.6) benign(0.367) TCGA-E7-A541-01 1 237054614 237054614 T C MTR Silent p.Y1063Y 0.16 TCGA-E7-A541-01 1 247076670 247076670 T G AHCTF1 Silent p.A149A 0.06 TCGA-E7-A541-01 1 27099988 27099988 G A ARID1A Splice_Site p.X1289_splice 0.12 TCGA-E7-A541-01 1 28785756 28785756 A G PHACTR4 Silent p.K69K 0.12 TCGA-E7-A541-01 1 32205614 32205614 G A BAI2 Silent p.L694L 0.22 TCGA-E7-A541-01 1 3328710 3328710 G C PRDM16 Missense_Mutation p.G650A 0.08 tolerated(0.75) benign(0.003) TCGA-E7-A541-01 1 3397028 3397028 G A ARHGEF16 Silent p.E669E 0.08 TCGA-E7-A541-01 1 36204801 36204801 A G CLSPN Silent p.L1122L 0.11 TCGA-E7-A541-01 1 36214104 36214104 G T CLSPN Missense_Mutation p.Q792K 0.11 deleterious(0.02) benign(0.364) TCGA-E7-A541-01 1 3761476 3761476 G A CEP104 Silent p.Y187Y 0.15 TCGA-E7-A541-01 1 39341560 39341560 G C GJA9 Missense_Mutation p.P71A 0.07 deleterious(0) probably_damaging(0.999) TCGA-E7-A541-01 1 40723841 40723841 C T ZMPSTE24 5'UTR 0.07 TCGA-E7-A541-01 1 42905670 42905670 C T ZMYND12 Missense_Mutation p.E151K 0.13 tolerated(0.35) benign(0.054) TCGA-E7-A541-01 1 44128690 44128690 T C KDM4A Silent p.F185F 0.06 TCGA-E7-A541-01 1 46751463 46751463 G A LRRC41 Missense_Mutation p.R356W 0.10 deleterious(0.02) possibly_damaging(0.835) TCGA-E7-A541-01 1 47610073 47610073 G T CYP4A22 Nonsense_Mutation p.E279* 0.08 TCGA-E7-A541-01 1 52498548 52498548 C T KTI12 Missense_Mutation p.D296N 0.15 deleterious(0) probably_damaging(0.968) TCGA-E7-A541-01 1 53122529 53122529 G C FAM159A Silent p.V130V 0.08 TCGA-E7-A541-01 1 57480629 57480629 G A DAB1 Silent p.D457D 0.11 TCGA-E7-A541-01 1 5923425 5923425 G A NPHP4 Missense_Mutation p.A1394V 0.05 tolerated(0.05) benign(0.078) TCGA-E7-A541-01 1 6680251 6680251 C G PHF13 Missense_Mutation p.S177W 0.24 deleterious(0) probably_damaging(0.988) TCGA-E7-A541-01 1 70504960 70504960 G A LRRC7 Silent p.L1113L 0.34 TCGA-E7-A541-01 1 7725042 7725042 C - CAMTA1 Frame_Shift_Del p.F814Sfs*20 0.08 TCGA-E7-A541-01 1 78408420 78408420 T C NEXN Missense_Mutation p.F645S 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-E7-A541-01 1 86047935 86047935 T C CYR61 Missense_Mutation p.V201A 0.05 tolerated(0.1) benign(0.021) TCGA-E7-A541-01 1 89476766 89476766 T G GBP3 Missense_Mutation p.K395Q 0.08 tolerated(0.38) benign(0.006) TCGA-E7-A541-01 20 19566143 19566143 C G SLC24A3 Missense_Mutation p.F189L 0.11 deleterious(0) probably_damaging(0.999) TCGA-E7-A541-01 20 23350298 23350299 CA - GZF1 Frame_Shift_Del p.T570Rfs*29 0.20 TCGA-E7-A541-01 20 30132835 30132835 G T HM13 Nonsense_Mutation p.E151* 0.11 TCGA-E7-A541-01 20 31386304 31386304 C G DNMT3B Missense_Mutation p.T510R 0.07 tolerated(0.89) benign(0.112) TCGA-E7-A541-01 20 40757392 40757392 A G PTPRT Splice_Site p.X949_splice 0.07 TCGA-E7-A541-01 20 43942749 43942749 G A RBPJL Missense_Mutation p.V278I 0.07 tolerated(0.11) benign(0.02) TCGA-E7-A541-01 20 61525040 61525040 C T DIDO1 Missense_Mutation p.V1027I 0.06 probably_damaging(0.994) TCGA-E7-A541-01 20 7866360 7866360 G T HAO1 Missense_Mutation p.A322D 0.11 deleterious(0) probably_damaging(0.958) TCGA-E7-A541-01 21 30378805 30378805 T C RWDD2B Missense_Mutation p.Y298C 0.37 deleterious(0) probably_damaging(0.928) TCGA-E7-A541-01 21 36421208 36421208 G A RUNX1 5'UTR 0.06 TCGA-E7-A541-01 21 46875443 46875443 C G COL18A1 5'UTR 0.17 TCGA-E7-A541-01 22 18210154 18210154 G A BCL2L13 Missense_Mutation p.E438K 0.09 tolerated_low_confidence(0.13) probably_damaging(0.987) TCGA-E7-A541-01 22 20077278 20077278 G C DGCR8 Missense_Mutation p.E323Q 0.07 tolerated(0.32) probably_damaging(0.954) TCGA-E7-A541-01 22 20920798 20920798 G A MED15 Silent p.Q245Q 0.11 TCGA-E7-A541-01 22 23090289 23090289 C T IGLV3-16 Silent p.I76I 0.11 TCGA-E7-A541-01 22 24698306 24698306 C T SPECC1L Missense_Mutation p.T36M 0.42 deleterious(0.01) benign(0.096) TCGA-E7-A541-01 22 29755927 29755927 G C AP1B1 Silent p.V55V 0.24 TCGA-E7-A541-01 22 29965261 29965261 G A NIPSNAP1 Silent p.P96P 0.15 TCGA-E7-A541-01 22 30886040 30886040 C T SEC14L4 3'UTR 0.54 TCGA-E7-A541-01 22 31942896 31942896 G C SFI1 Missense_Mutation p.E130Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-E7-A541-01 22 31942924 31942924 G A SFI1 Nonsense_Mutation p.W139* 0.06 TCGA-E7-A541-01 22 32589297 32589297 A G RFPL2 Intron 0.08 TCGA-E7-A541-01 22 36680509 36680509 C G MYH9 Silent p.L1844L 0.18 TCGA-E7-A541-01 22 40217106 40217106 A G ENTHD1 Missense_Mutation p.F242L 0.11 tolerated(0.13) benign(0.169) TCGA-E7-A541-01 22 45943043 45943043 G A FBLN1 Missense_Mutation p.R467Q 0.18 tolerated(0.13) benign(0.007) TCGA-E7-A541-01 22 50280020 50280020 G A ZBED4 Missense_Mutation p.E904K 0.09 deleterious(0) probably_damaging(0.979) TCGA-E7-A541-01 2 105924162 105924162 C T TGFBRAP1 Silent p.Q199Q 0.30 TCGA-E7-A541-01 2 105924411 105924411 G C TGFBRAP1 Missense_Mutation p.I116M 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-E7-A541-01 2 10863041 10863041 G A ATP6V1C2 Missense_Mutation p.M22I 0.11 deleterious(0.01) benign(0.004) TCGA-E7-A541-01 2 110373586 110373586 G A SOWAHC Missense_Mutation p.R507Q 0.28 tolerated(0.2) benign(0.027) TCGA-E7-A541-01 2 113832741 113832741 G A IL1F10 Missense_Mutation p.E87K 0.30 tolerated(0.34) possibly_damaging(0.762) TCGA-E7-A541-01 2 120373243 120373243 C G PCDP1 Missense_Mutation p.S456R 0.12 tolerated(0.28) benign(0.142) TCGA-E7-A541-01 2 130900001 130900001 G A CCDC74B Intron 0.08 TCGA-E7-A541-01 2 131797741 131797741 C A ARHGEF4 Silent p.I300I 0.10 TCGA-E7-A541-01 2 135199389 135199389 G A MGAT5 Missense_Mutation p.E644K 0.12 tolerated(0.64) benign(0.156) TCGA-E7-A541-01 2 135966473 135966473 G A ZRANB3 Silent p.I857I 0.08 TCGA-E7-A541-01 2 162875265 162875265 G A DPP4 Missense_Mutation p.A465V 0.08 deleterious(0.01) possibly_damaging(0.672) TCGA-E7-A541-01 2 165802238 165802238 C T SLC38A11 Splice_Site p.X21_splice 0.15 TCGA-E7-A541-01 2 166892637 166892637 A T SCN1A Missense_Mutation p.I1117N 0.08 deleterious(0) probably_damaging(0.999) TCGA-E7-A541-01 2 179449716 179449716 G C TTN Intron 0.13 TCGA-E7-A541-01 2 179453644 179453644 G A TTN Silent p.F20936F 0.17 TCGA-E7-A541-01 2 179500764 179500764 G C TTN Missense_Mutation p.T13845R 0.05 TCGA-E7-A541-01 2 17954014 17954014 G A GEN1 Missense_Mutation p.D306N 0.21 tolerated(0.45) benign(0.002) TCGA-E7-A541-01 2 190603367 190603367 A T ANKAR Missense_Mutation p.D1220V 0.13 tolerated(0.05) benign(0.028) TCGA-E7-A541-01 2 196722332 196722332 G A DNAH7 Missense_Mutation p.S2728L 0.15 deleterious(0.04) benign(0.008) TCGA-E7-A541-01 2 197087035 197087035 A C HECW2 Missense_Mutation p.L1349R 0.14 deleterious(0) probably_damaging(0.993) TCGA-E7-A541-01 2 198260829 198260829 C A SF3B1 Missense_Mutation p.D1164Y 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-E7-A541-01 2 198359446 198359446 C G HSPD1 Missense_Mutation p.E181Q 0.08 tolerated(0.13) benign(0.047) TCGA-E7-A541-01 2 204058599 204058599 C T NBEAL1 Nonsense_Mutation p.Q2306* 0.10 TCGA-E7-A541-01 2 207169596 207169596 A C ZDBF2 Missense_Mutation p.E115A 0.12 deleterious(0.02) benign(0.292) TCGA-E7-A541-01 2 207530652 207530652 A T DYTN Missense_Mutation p.L361H 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-E7-A541-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-E7-A541-01 2 213872252 213872252 G A IKZF2 Silent p.F471F 0.10 TCGA-E7-A541-01 2 219492826 219492826 C A PLCD4 Missense_Mutation p.P283T 0.12 tolerated(0.06) possibly_damaging(0.828) TCGA-E7-A541-01 2 219507087 219507087 G A ZNF142 Silent p.L1384L 0.10 TCGA-E7-A541-01 2 230668934 230668934 G C TRIP12 Nonsense_Mutation p.S812* 0.07 TCGA-E7-A541-01 2 233393234 233393234 C T CHRND Missense_Mutation p.S126F 0.26 deleterious(0) probably_damaging(0.934) TCGA-E7-A541-01 2 234545564 234545564 A T UGT1A10 Missense_Mutation p.K132N 0.09 tolerated(0.1) probably_damaging(0.948) TCGA-E7-A541-01 2 234628118 234628118 C G UGT1A4 Missense_Mutation p.L218V 0.05 tolerated(0.29) benign(0.122) TCGA-E7-A541-01 2 24305854 24305854 C T TP53I3 Missense_Mutation p.E103K 0.29 tolerated(0.11) benign(0.038) TCGA-E7-A541-01 2 26486264 26486264 G A HADHB Silent p.T42T 0.27 TCGA-E7-A541-01 2 27892170 27892170 G C SLC4A1AP Missense_Mutation p.G421R 0.05 deleterious(0) probably_damaging(0.994) TCGA-E7-A541-01 2 28248176 28248176 A C BRE Missense_Mutation p.Q128H 0.07 tolerated(0.09) probably_damaging(0.997) TCGA-E7-A541-01 2 29294960 29294960 C G C2orf71 Missense_Mutation p.R723T 0.13 tolerated(0.22) possibly_damaging(0.535) TCGA-E7-A541-01 2 33012171 33012171 T C TTC27 Silent p.A651A 0.19 TCGA-E7-A541-01 2 44001270 44001270 C A DYNC2LI1 5'UTR 0.12 TCGA-E7-A541-01 2 48692737 48692737 C G PPP1R21 Missense_Mutation p.P285A 0.07 tolerated(0.12) possibly_damaging(0.865) TCGA-E7-A541-01 2 56108799 56108799 G T EFEMP1 Silent p.S196S 0.08 TCGA-E7-A541-01 2 61336427 61336428 AC - KIAA1841 Frame_Shift_Del p.Q581Kfs*11 0.11 TCGA-E7-A541-01 2 63085579 63085579 G A EHBP1 Missense_Mutation p.E225K 0.07 deleterious(0.04) possibly_damaging(0.65) TCGA-E7-A541-01 2 63720068 63720068 C T WDPCP Missense_Mutation p.D28N 0.08 tolerated_low_confidence(0.48) benign(0.002) TCGA-E7-A541-01 2 64681704 64681704 G A LGALSL Missense_Mutation p.D9N 0.24 tolerated_low_confidence(0.06) benign(0.033) TCGA-E7-A541-01 2 65467065 65467065 C A ACTR2 Nonsense_Mutation p.S43* 0.24 TCGA-E7-A541-01 2 65480988 65480988 A C ACTR2 Missense_Mutation p.Y197S 0.26 deleterious(0.03) benign(0.066) TCGA-E7-A541-01 2 73829444 73829444 G T ALMS1 Missense_Mutation p.D4082Y 0.09 possibly_damaging(0.561) TCGA-E7-A541-01 2 74394143 74394143 C T MOB1A Silent p.P91P 0.05 TCGA-E7-A541-01 2 74687691 74687691 G T WBP1 Silent p.V231V 0.12 TCGA-E7-A541-01 2 75104444 75104444 G A HK2 Missense_Mutation p.E343K 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-E7-A541-01 2 84784938 84784938 A G DNAH6 Missense_Mutation p.D561G 0.07 tolerated(0.06) benign(0.028) TCGA-E7-A541-01 2 87016549 87016549 C T CD8A Silent p.T174T 0.11 TCGA-E7-A541-01 2 8871593 8871593 C A KIDINS220 Nonsense_Mutation p.E1525* 0.09 TCGA-E7-A541-01 3 113118832 113118832 T C WDR52 Missense_Mutation p.Y497C 0.06 deleterious(0) probably_damaging(0.99) TCGA-E7-A541-01 3 121258343 121258343 T C POLQ Missense_Mutation p.T190A 0.10 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 3 121258347 121258347 G C POLQ Silent p.V188V 0.10 TCGA-E7-A541-01 3 123005614 123005614 C T ADCY5 Missense_Mutation p.R1192Q 0.12 deleterious(0) possibly_damaging(0.903) TCGA-E7-A541-01 3 124515550 124515550 T C ITGB5 Missense_Mutation p.N460D 0.07 tolerated(0.61) benign(0.008) TCGA-E7-A541-01 3 128993768 128993768 G A COPG1 Missense_Mutation p.E782K 0.13 tolerated(0.39) benign(0.023) TCGA-E7-A541-01 3 132441147 132441147 T A NPHP3 Missense_Mutation p.D18V 0.15 deleterious(0) benign(0.002) TCGA-E7-A541-01 3 13417080 13417080 A C NUP210 Missense_Mutation p.I452S 0.10 tolerated(0.43) benign(0.002) TCGA-E7-A541-01 3 135720887 135720887 G C PPP2R3A Missense_Mutation p.E183Q 0.27 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-E7-A541-01 3 137982996 137982996 C T ARMC8 Missense_Mutation p.S400F 0.11 deleterious(0) probably_damaging(0.961) TCGA-E7-A541-01 3 138403466 138403466 C T PIK3CB Splice_Site p.X772_splice 0.13 TCGA-E7-A541-01 3 142232402 142232402 G A ATR Missense_Mutation p.L1528F 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-E7-A541-01 3 14709681 14709681 A G CCDC174 Silent p.E315E 0.09 TCGA-E7-A541-01 3 149684217 149684217 T G PFN2 3'UTR 0.06 TCGA-E7-A541-01 3 151162887 151162887 C T IGSF10 Missense_Mutation p.E1628K 0.08 tolerated(0.74) benign(0.001) TCGA-E7-A541-01 3 178748673 178748673 G A ZMAT3 Missense_Mutation p.P129S 0.05 tolerated(0.95) benign(0.005) TCGA-E7-A541-01 3 183707130 183707130 C T ABCC5 Silent p.E57E 0.05 TCGA-E7-A541-01 3 184106783 184106783 C T CHRD Missense_Mutation p.P938S 0.12 tolerated(0.62) benign(0.004) TCGA-E7-A541-01 3 19295255 19295255 G A KCNH8 Silent p.Q62Q 0.09 TCGA-E7-A541-01 3 195475816 195475816 G A MUC4 Missense_Mutation p.H5331Y 0.18 benign(0.128) TCGA-E7-A541-01 3 24004045 24004045 G C NR1D2 Missense_Mutation p.Q365H 0.11 tolerated(0.16) benign(0) TCGA-E7-A541-01 3 25639798 25639798 T C TOP2B Silent p.%3D 0.11 TCGA-E7-A541-01 3 28382029 28382029 G C AZI2 Nonsense_Mutation p.S27* 0.17 TCGA-E7-A541-01 3 37357083 37357083 A T GOLGA4 Silent p.V491V 0.18 TCGA-E7-A541-01 3 38134328 38134328 C T DLEC1 Silent p.I571I 0.14 TCGA-E7-A541-01 3 38524833 38524833 A T ACVR2B 3'UTR 0.12 TCGA-E7-A541-01 3 47047473 47047473 T C NBEAL2 Missense_Mutation p.I2280T 0.06 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 3 47462099 47462099 C T SCAP Missense_Mutation p.R503K 0.52 deleterious(0.01) probably_damaging(0.976) TCGA-E7-A541-01 3 49691191 49691191 C A BSN Missense_Mutation p.A1401D 0.08 unknown(0) TCGA-E7-A541-01 3 51743014 51743014 T C GRM2 Silent p.L5L 0.17 TCGA-E7-A541-01 3 52003975 52003975 T C ABHD14B Missense_Mutation p.N146S 0.06 deleterious(0.03) benign(0.006) TCGA-E7-A541-01 3 57489832 57489832 C G DNAH12 Missense_Mutation p.D333H 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-E7-A541-01 3 62180833 62180833 T A PTPRG Missense_Mutation p.M439K 0.12 deleterious(0) benign(0.285) TCGA-E7-A541-01 3 64619468 64619468 G C ADAMTS9 Missense_Mutation p.D648E 0.06 deleterious(0) possibly_damaging(0.877) TCGA-E7-A541-01 3 79639095 79639095 G A ROBO1 5'UTR 0.37 TCGA-E7-A541-01 3 79639099 79639099 G A ROBO1 5'UTR 0.38 TCGA-E7-A541-01 3 98001888 98001888 C G OR5H2 Missense_Mutation p.L53V 0.06 tolerated(0.06) benign(0.071) TCGA-E7-A541-01 4 10447670 10447670 G A ZNF518B Missense_Mutation p.P95S 0.18 tolerated(0.07) benign(0.002) TCGA-E7-A541-01 4 106156521 106156521 G A TET2 Silent p.P474P 0.07 TCGA-E7-A541-01 4 110791155 110791155 C T LRIT3 Missense_Mutation p.S417F 0.11 tolerated(0.66) benign(0) TCGA-E7-A541-01 4 114253135 114253135 C T ANK2 Missense_Mutation p.H1045Y 0.05 probably_damaging(0.999) TCGA-E7-A541-01 4 118975068 118975068 G T NDST3 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.01) benign(0.001) TCGA-E7-A541-01 4 134071538 134071538 C T PCDH10 Silent p.R81R 0.07 TCGA-E7-A541-01 4 134072907 134072907 G C PCDH10 Missense_Mutation p.D538H 0.07 tolerated(0.21) possibly_damaging(0.894) TCGA-E7-A541-01 4 146059082 146059082 C T OTUD4 Missense_Mutation p.A884T 0.09 tolerated(0.53) benign(0.004) TCGA-E7-A541-01 4 154523767 154523767 C T KIAA0922 Missense_Mutation p.R843C 0.11 tolerated(0.17) possibly_damaging(0.828) TCGA-E7-A541-01 4 16510157 16510157 C G LDB2 Splice_Site p.X297_splice 0.07 TCGA-E7-A541-01 4 186299182 186299182 A C LRP2BP Intron 0.33 TCGA-E7-A541-01 4 1957746 1957746 T A WHSC1 Silent p.V904V 0.07 TCGA-E7-A541-01 4 1976670 1976670 C T WHSC1 Silent p.L1151L 0.05 TCGA-E7-A541-01 4 2209974 2209974 T C POLN Missense_Mutation p.I152V 0.14 tolerated(0.56) benign(0.001) TCGA-E7-A541-01 4 37592179 37592179 G C C4orf19 Missense_Mutation p.E168Q 0.16 tolerated(0.32) benign(0.013) TCGA-E7-A541-01 4 42041033 42041033 A G SLC30A9 Missense_Mutation p.K234E 0.10 tolerated(0.49) benign(0.007) TCGA-E7-A541-01 4 73957396 73957396 T A ANKRD17 Silent p.T1983T 0.07 TCGA-E7-A541-01 4 76529067 76529067 G C CDKL2 Missense_Mutation p.I243M 0.07 tolerated(0.06) benign(0.072) TCGA-E7-A541-01 4 79173677 79173677 C T FRAS1 Silent p.S147S 0.33 TCGA-E7-A541-01 4 79455659 79455659 C T FRAS1 Missense_Mutation p.S3661L 0.08 probably_damaging(0.971) TCGA-E7-A541-01 5 112228042 112228042 G A ZRSR1 Missense_Mutation p.E236K 0.08 deleterious(0) probably_damaging(0.925) TCGA-E7-A541-01 5 121488433 121488433 G A ZNF474 Missense_Mutation p.E250K 0.16 deleterious(0.02) benign(0.172) TCGA-E7-A541-01 5 121786660 121786660 A T SNCAIP Missense_Mutation p.E706D 0.14 deleterious(0) benign(0.349) TCGA-E7-A541-01 5 127641305 127641305 C G FBN2 Missense_Mutation p.D1858H 0.10 deleterious(0.04) possibly_damaging(0.905) TCGA-E7-A541-01 5 13727660 13727660 G C DNAH5 Missense_Mutation p.L3997V 0.06 possibly_damaging(0.694) TCGA-E7-A541-01 5 140056478 140056478 A C HARS Missense_Mutation p.S319A 0.08 deleterious(0.05) benign(0.005) TCGA-E7-A541-01 5 140166544 140166544 A G PCDHA1 Silent p.Q223Q 0.09 TCGA-E7-A541-01 5 140187572 140187572 C G PCDHA4 Nonsense_Mutation p.S267* 0.08 TCGA-E7-A541-01 5 140476543 140476543 G A PCDHB2 Silent p.S723S 0.11 TCGA-E7-A541-01 5 140865179 140865179 C A PCDHGC4 Missense_Mutation p.P147T 0.16 tolerated(1) benign(0.089) TCGA-E7-A541-01 5 141059737 141059738 CT - ARAP3 Frame_Shift_Del p.S106Wfs*38 0.11 TCGA-E7-A541-01 5 145719172 145719172 C T POU4F3 Missense_Mutation p.A61V 0.06 deleterious(0.04) possibly_damaging(0.691) TCGA-E7-A541-01 5 148747815 148747816 CA - PCYOX1L Frame_Shift_Del p.T362Rfs*59 0.11 TCGA-E7-A541-01 5 154250350 154250350 C T CNOT8 Silent p.L147L 0.14 TCGA-E7-A541-01 5 156890299 156890299 A T NIPAL4 Nonsense_Mutation p.K141* 0.11 TCGA-E7-A541-01 5 158747418 158747418 G A IL12B Missense_Mutation p.A198V 0.24 tolerated(0.5) benign(0.214) TCGA-E7-A541-01 5 2749802 2749802 A T IRX2 Missense_Mutation p.Y117N 0.17 deleterious(0) probably_damaging(0.996) TCGA-E7-A541-01 5 35697878 35697878 C T SPEF2 Silent p.I708I 0.08 TCGA-E7-A541-01 5 35955898 35955898 C T UGT3A1 Missense_Mutation p.G382S 0.21 deleterious(0.04) probably_damaging(0.979) TCGA-E7-A541-01 5 36170507 36170507 G A SKP2 Missense_Mutation p.E245K 0.09 tolerated(0.16) benign(0.076) TCGA-E7-A541-01 5 57913477 57913477 C G RAB3C Missense_Mutation p.S11C 0.09 deleterious(0) possibly_damaging(0.572) TCGA-E7-A541-01 5 68687744 68687744 G T RAD17 Missense_Mutation p.D376Y 0.09 deleterious(0) possibly_damaging(0.793) TCGA-E7-A541-01 5 76348627 76348627 C G AGGF1 Missense_Mutation p.L488V 0.24 tolerated(0.07) benign(0.39) TCGA-E7-A541-01 5 7866085 7866085 G A FASTKD3 Missense_Mutation p.H484Y 0.31 tolerated(1) benign(0) TCGA-E7-A541-01 5 79366561 79366561 C A THBS4 Silent p.I516I 0.10 TCGA-E7-A541-01 5 89757191 89757191 A G MBLAC2 Silent p.T211T 0.11 TCGA-E7-A541-01 6 102250292 102250292 G C GRIK2 Silent p.L394L 0.17 TCGA-E7-A541-01 6 112496642 112496642 T A LAMA4 Missense_Mutation p.E410D 0.13 tolerated(0.63) benign(0.019) TCGA-E7-A541-01 6 11778902 11778902 C T ADTRP Missense_Mutation p.E31K 0.08 tolerated(0.67) benign(0.003) TCGA-E7-A541-01 6 118588196 118588196 C T SLC35F1 Silent p.L172L 0.11 TCGA-E7-A541-01 6 133804185 133804185 G T EYA4 Missense_Mutation p.D375Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-E7-A541-01 6 142397048 142397048 T A NMBR Missense_Mutation p.I304F 0.07 tolerated(0.09) possibly_damaging(0.746) TCGA-E7-A541-01 6 151673544 151673544 C G AKAP12 Missense_Mutation p.Q1340E 0.08 tolerated(0.28) benign(0.006) TCGA-E7-A541-01 6 157527786 157527786 G C ARID1B Missense_Mutation p.K1837N 0.30 probably_damaging(0.995) TCGA-E7-A541-01 6 157528054 157528054 G C ARID1B Missense_Mutation p.D1927H 0.22 probably_damaging(0.999) TCGA-E7-A541-01 6 157528059 157528059 G C ARID1B Missense_Mutation p.E1928D 0.27 probably_damaging(0.99) TCGA-E7-A541-01 6 158504548 158504548 A G SYNJ2 Missense_Mutation p.M985V 0.09 tolerated(0.73) benign(0.002) TCGA-E7-A541-01 6 158535942 158535942 G C SERAC1 Missense_Mutation p.I521M 0.24 tolerated(0.16) possibly_damaging(0.83) TCGA-E7-A541-01 6 160468294 160468294 A C IGF2R Silent p.R719R 0.13 TCGA-E7-A541-01 6 16326809 16326809 G A ATXN1 Missense_Mutation p.S578F 0.06 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 6 30954653 30954653 C A MUC21 Missense_Mutation p.S234Y 0.11 deleterious(0.04) unknown(0) TCGA-E7-A541-01 6 34496540 34496540 G C PACSIN1 Missense_Mutation p.K114N 0.04 deleterious(0) possibly_damaging(0.803) TCGA-E7-A541-01 6 34827003 34827003 C T UHRF1BP1 Missense_Mutation p.S957L 0.09 tolerated(0.37) benign(0.001) TCGA-E7-A541-01 6 34985577 34985577 T A ANKS1A Nonsense_Mutation p.L584* 0.05 TCGA-E7-A541-01 6 36839530 36839530 C G PPIL1 Missense_Mutation p.D59H 0.06 deleterious(0.03) probably_damaging(0.937) TCGA-E7-A541-01 6 38882999 38882999 G A DNAH8 Missense_Mutation p.S3112N 0.09 probably_damaging(0.911) TCGA-E7-A541-01 6 41753185 41753185 G A PRICKLE4 Silent p.L163L 0.19 TCGA-E7-A541-01 6 49585841 49585841 C T RHAG Missense_Mutation p.M144I 0.15 deleterious(0.01) probably_damaging(0.935) TCGA-E7-A541-01 6 51497428 51497428 G C PKHD1 Missense_Mutation p.S3867C 0.08 deleterious(0) probably_damaging(0.99) TCGA-E7-A541-01 6 56044845 56044845 T A COL21A1 Missense_Mutation p.K57N 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 6 79711676 79711676 G A PHIP Missense_Mutation p.P607S 0.17 deleterious(0) benign(0.015) TCGA-E7-A541-01 6 82881106 82881107 AT - IBTK 3'UTR 0.10 TCGA-E7-A541-01 6 83905759 83905759 G A RWDD2A Nonsense_Mutation p.W216* 0.09 TCGA-E7-A541-01 6 97676935 97676935 G A MMS22L Missense_Mutation p.S625F 0.08 deleterious(0.01) possibly_damaging(0.628) TCGA-E7-A541-01 7 100676285 100676285 A G MUC17 Missense_Mutation p.T530A 0.07 probably_damaging(0.952) TCGA-E7-A541-01 7 100682231 100682231 G A MUC17 Missense_Mutation p.E2512K 0.09 probably_damaging(0.931) TCGA-E7-A541-01 7 128116867 128116867 G A METTL2B Silent p.K16K 0.08 TCGA-E7-A541-01 7 128315731 128315731 C T FAM71F2 Silent p.V61V 0.09 TCGA-E7-A541-01 7 130044470 130044470 C A CEP41 Silent p.S119S 0.09 TCGA-E7-A541-01 7 135279335 135279335 G T NUP205 Missense_Mutation p.W624L 0.10 deleterious(0) probably_damaging(0.996) TCGA-E7-A541-01 7 141758030 141758030 T C MGAM Missense_Mutation p.Y1241H 0.06 deleterious(0) probably_damaging(0.999) TCGA-E7-A541-01 7 142985527 142985527 G C CASP2 5'UTR 0.09 TCGA-E7-A541-01 7 143826812 143826812 G A OR2A14 Missense_Mutation p.V203M 0.06 tolerated(0.09) benign(0.24) TCGA-E7-A541-01 7 144015489 144015489 T C OR2A1 Missense_Mutation p.I91T 0.04 deleterious(0) possibly_damaging(0.458) TCGA-E7-A541-01 7 148800990 148800990 C T ZNF425 Missense_Mutation p.R658Q 0.12 tolerated(0.06) possibly_damaging(0.698) TCGA-E7-A541-01 7 156743191 156743191 G A NOM1 Missense_Mutation p.D254N 0.09 tolerated(0.3) benign(0.04) TCGA-E7-A541-01 7 158826993 158826993 G A VIPR2 Silent p.V294V 0.12 TCGA-E7-A541-01 7 28997514 28997514 G C AC005013.5 Intron 0.06 TCGA-E7-A541-01 7 2979530 2979530 C T CARD11 Missense_Mutation p.M239I 0.06 deleterious(0.03) benign(0.004) TCGA-E7-A541-01 7 31378735 31378735 T A NEUROD6 Missense_Mutation p.R50W 0.45 deleterious(0.02) benign(0.252) TCGA-E7-A541-01 7 35029498 35029498 C G DPY19L1 Missense_Mutation p.E201Q 0.18 tolerated(0.07) probably_damaging(0.93) TCGA-E7-A541-01 7 40027398 40027398 C A CDK13 Missense_Mutation p.A471E 0.09 tolerated_low_confidence(0.07) unknown(0) TCGA-E7-A541-01 7 42964279 42964279 C T PSMA2 Silent p.Q123Q 0.09 TCGA-E7-A541-01 7 43982645 43982645 C A UBE2D4 Intron 0.06 TCGA-E7-A541-01 7 44152474 44152474 C T AEBP1 Silent p.I845I 0.07 TCGA-E7-A541-01 7 56082826 56082826 C T PSPH Missense_Mutation p.E154K 0.08 tolerated(0.28) benign(0.006) TCGA-E7-A541-01 7 64363679 64363679 C G ZNF273 5'UTR 0.29 TCGA-E7-A541-01 7 65338472 65338472 G A VKORC1L1 Silent p.R38R 0.10 TCGA-E7-A541-01 7 65419176 65419176 C T VKORC1L1 Silent p.I140I 0.17 TCGA-E7-A541-01 7 72892654 72892654 G C BAZ1B Missense_Mutation p.H379Q 0.14 tolerated(0.58) benign(0.018) TCGA-E7-A541-01 7 75651263 75651263 C T STYXL1 Silent p.V71V 0.09 TCGA-E7-A541-01 7 75959034 75959034 C T YWHAG Missense_Mutation p.D202N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.706) TCGA-E7-A541-01 7 77549660 77549660 G C PHTF2 Missense_Mutation p.D247H 0.22 tolerated(0.1) possibly_damaging(0.668) TCGA-E7-A541-01 7 81374356 81374356 C T HGF Missense_Mutation p.D236N 0.09 deleterious(0) possibly_damaging(0.891) TCGA-E7-A541-01 7 8196772 8196772 G A ICA1 Nonsense_Mutation p.Q260* 0.19 TCGA-E7-A541-01 7 87762245 87762245 G A ADAM22 Silent p.L352L 0.15 TCGA-E7-A541-01 7 88965888 88965888 G T ZNF804B Missense_Mutation p.V1198F 0.09 tolerated(0.06) possibly_damaging(0.86) TCGA-E7-A541-01 7 92940485 92940485 C T CCDC132 Missense_Mutation p.R586W 0.12 deleterious(0) probably_damaging(0.947) TCGA-E7-A541-01 7 99662295 99662295 G C ZSCAN21 3'UTR 0.22 TCGA-E7-A541-01 8 104384878 104384878 C T CTHRC1 Intron 0.09 TCGA-E7-A541-01 8 10464712 10464712 G A RP1L1 Missense_Mutation p.S2299F 0.11 unknown(0) TCGA-E7-A541-01 8 10583964 10583964 C T SOX7 Missense_Mutation p.G203S 0.14 tolerated(0.6) benign(0.001) TCGA-E7-A541-01 8 113702252 113702252 G A CSMD3 Missense_Mutation p.P667L 0.18 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 8 116599777 116599777 A T TRPS1 Silent p.T717T 0.05 TCGA-E7-A541-01 8 116631423 116631423 G C TRPS1 Missense_Mutation p.S301C 0.10 deleterious_low_confidence(0) possibly_damaging(0.671) TCGA-E7-A541-01 8 120628590 120628590 T A ENPP2 Missense_Mutation p.N231I 0.15 deleterious(0) probably_damaging(0.929) TCGA-E7-A541-01 8 121312980 121312980 G A COL14A1 Missense_Mutation p.E1442K 0.08 tolerated(0.33) benign(0.184) TCGA-E7-A541-01 8 134072369 134072369 C T SLA Missense_Mutation p.E53K 0.05 tolerated(0.11) possibly_damaging(0.503) TCGA-E7-A541-01 8 142202477 142202477 C T DENND3 Nonsense_Mutation p.Q1063* 0.17 TCGA-E7-A541-01 8 143927925 143927925 T A GML Missense_Mutation p.F99Y 0.12 tolerated(0.16) benign(0.183) TCGA-E7-A541-01 8 144812524 144812524 C T FAM83H Missense_Mutation p.E77K 0.10 tolerated(0.14) possibly_damaging(0.542) TCGA-E7-A541-01 8 144812632 144812632 C T FAM83H Missense_Mutation p.E41K 0.10 deleterious(0.04) possibly_damaging(0.871) TCGA-E7-A541-01 8 144943649 144943649 G T EPPK1 Missense_Mutation p.A1258D 0.12 benign(0.383) TCGA-E7-A541-01 8 145556961 145556961 C G SCRT1 Missense_Mutation p.K311N 0.36 deleterious(0) unknown(0) TCGA-E7-A541-01 8 22005590 22005590 C T LGI3 3'UTR 0.28 TCGA-E7-A541-01 8 22886051 22886051 T A TNFRSF10B Nonsense_Mutation p.K181* 0.06 TCGA-E7-A541-01 8 28209048 28209048 C A ZNF395 Silent p.G399G 0.25 TCGA-E7-A541-01 8 30210483 30210483 G A TUBBP1 RNA 0.12 TCGA-E7-A541-01 8 41552747 41552747 C A ANK1 Missense_Mutation p.R1062S 0.13 tolerated(0.12) benign(0.057) TCGA-E7-A541-01 8 73480339 73480339 G C KCNB2 Missense_Mutation p.D124H 0.12 deleterious(0) probably_damaging(0.99) TCGA-E7-A541-01 9 113169862 113169862 G C SVEP1 Nonsense_Mutation p.S2673* 0.18 TCGA-E7-A541-01 9 119976746 119976746 A G ASTN2 Silent p.P302P 0.08 TCGA-E7-A541-01 9 131768630 131768630 G C NUP188 Missense_Mutation p.E1686Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-E7-A541-01 9 133760714 133760714 C T ABL1 Missense_Mutation p.R1032W 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A541-01 9 135940497 135940497 C G CEL Silent p.A140A 0.25 TCGA-E7-A541-01 9 135983459 135983459 T A RALGDS Silent p.A371A 0.25 TCGA-E7-A541-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.10 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 9 137772755 137772755 G A FCN2 Missense_Mutation p.D30N 0.16 tolerated(0.1) benign(0.089) TCGA-E7-A541-01 9 139910178 139910178 C A ABCA2 Missense_Mutation p.D1155Y 0.62 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 9 16552651 16552651 C A BNC2 Silent p.V182V 0.13 TCGA-E7-A541-01 9 19049980 19049980 C T RRAGA Missense_Mutation p.S108L 0.15 deleterious(0.05) benign(0.056) TCGA-E7-A541-01 9 26920233 26920233 C A PLAA Nonsense_Mutation p.E397* 0.48 TCGA-E7-A541-01 9 35043533 35043533 G A C9orf131 Missense_Mutation p.E303K 0.26 tolerated(0.21) benign(0.016) TCGA-E7-A541-01 9 372262 372262 C T DOCK8 Silent p.P695P 0.16 TCGA-E7-A541-01 9 37441791 37441791 T C ZBTB5 Missense_Mutation p.Q253R 0.13 deleterious_low_confidence(0.03) benign(0.081) TCGA-E7-A541-01 9 82337373 82337373 C T TLE4 Missense_Mutation p.S665F 0.93 deleterious(0) probably_damaging(1) TCGA-E7-A541-01 9 84230961 84230961 C G TLE1 Missense_Mutation p.S285T 0.06 tolerated(0.6) benign(0.002) TCGA-E7-A541-01 9 94486396 94486396 G C ROR2 Missense_Mutation p.P794A 0.10 tolerated(0.56) benign(0.04) TCGA-E7-A541-01 X 117526819 117526819 A T WDR44 Missense_Mutation p.L137F 0.12 tolerated_low_confidence(0.35) benign(0) TCGA-E7-A541-01 X 119742150 119742150 C G MCTS1 Missense_Mutation p.I112M 0.08 tolerated(0.17) benign(0.368) TCGA-E7-A541-01 X 122459964 122459964 T C GRIA3 Missense_Mutation p.V199A 0.14 tolerated(1) benign(0.002) TCGA-E7-A541-01 X 123785804 123785804 T C TENM1 Silent p.G513G 0.15 TCGA-E7-A541-01 X 131234650 131234650 G C FRMD7 Missense_Mutation p.S51C 0.10 tolerated(0.24) probably_damaging(0.914) TCGA-E7-A541-01 X 135570661 135570661 T C BRS3 Missense_Mutation p.S130P 0.11 deleterious(0) probably_damaging(0.999) TCGA-E7-A541-01 X 138724729 138724729 A C MCF2 Intron 0.23 TCGA-E7-A541-01 X 153940813 153940813 G A GAB3 Nonsense_Mutation p.Q254* 0.20 TCGA-E7-A541-01 X 155003687 155003687 G C SPRY3 Missense_Mutation p.D52H 0.17 deleterious(0.04) benign(0.017) TCGA-E7-A541-01 X 20183019 20183019 C T RPS6KA3 Missense_Mutation p.E588K 0.19 deleterious(0) possibly_damaging(0.907) TCGA-E7-A541-01 X 48458084 48458084 G C WDR13 Missense_Mutation p.D168H 0.11 deleterious(0) probably_damaging(0.913) TCGA-E7-A541-01 X 69500119 69500119 C G ARR3 Missense_Mutation p.S327C 0.07 deleterious(0) possibly_damaging(0.792) TCGA-E7-A541-01 X 79932317 79932317 C G BRWD3 Missense_Mutation p.D1734H 0.10 deleterious_low_confidence(0) unknown(0) TCGA-E7-A5KE-01 10 100177393 100177393 A C HPS1 Silent p.T677T 0.27 TCGA-E7-A5KE-01 10 103310636 103310636 C T BTRC 3'UTR 0.34 TCGA-E7-A5KE-01 10 103603309 103603309 C A KCNIP2 Missense_Mutation p.R6L 0.21 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-E7-A5KE-01 10 105141541 105141541 A G TAF5 Missense_Mutation p.T493A 0.34 tolerated(0.47) benign(0.18) TCGA-E7-A5KE-01 10 125771922 125771922 G A CHST15 Silent p.L474L 0.42 TCGA-E7-A5KE-01 10 126678061 126678061 G C CTBP2 3'UTR 0.22 TCGA-E7-A5KE-01 10 24809178 24809178 G A KIAA1217 Silent p.L768L 0.33 TCGA-E7-A5KE-01 10 25883152 25883152 C A GPR158 Intron 0.55 TCGA-E7-A5KE-01 10 5008253 5008253 G C AKR1C1 Missense_Mutation p.D78H 0.41 deleterious(0) possibly_damaging(0.637) TCGA-E7-A5KE-01 10 61828468 61828468 C G ANK3 Missense_Mutation p.K4057N 0.35 benign(0.094) TCGA-E7-A5KE-01 10 70066589 70066589 T C PBLD Missense_Mutation p.I5V 0.36 tolerated(0.61) benign(0.005) TCGA-E7-A5KE-01 10 75457548 75457548 C T AGAP5 5'UTR 0.27 TCGA-E7-A5KE-01 10 75556952 75556952 G A ZSWIM8 Missense_Mutation p.R1119H 0.41 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-E7-A5KE-01 10 89127194 89127194 G A NUTM2D 3'UTR 0.27 TCGA-E7-A5KE-01 10 95141087 95141087 C T MYOF Missense_Mutation p.V589I 0.30 tolerated(0.35) benign(0.001) TCGA-E7-A5KE-01 10 96098472 96098472 G T NOC3L Missense_Mutation p.L662M 0.32 deleterious(0) possibly_damaging(0.594) TCGA-E7-A5KE-01 11 104905049 104905049 T C CASP1 Missense_Mutation p.T54A 0.51 tolerated(1) benign(0.001) TCGA-E7-A5KE-01 11 119170462 119170462 A C CBL Missense_Mutation p.I898L 0.40 deleterious_low_confidence(0.01) benign(0.077) TCGA-E7-A5KE-01 11 119185612 119185612 C T MCAM Missense_Mutation p.E111K 0.49 tolerated(0.24) possibly_damaging(0.616) TCGA-E7-A5KE-01 11 18956162 18956162 C G MRGPRX1 Missense_Mutation p.R57P 0.94 deleterious(0.02) benign(0.055) TCGA-E7-A5KE-01 11 48267047 48267047 A C OR4X2 Missense_Mutation p.Q131P 0.07 tolerated(0.13) possibly_damaging(0.756) TCGA-E7-A5KE-01 11 60543371 60543371 T C MS4A15 3'UTR 0.25 TCGA-E7-A5KE-01 11 62294877 62294877 C G AHNAK Missense_Mutation p.E2338Q 0.23 probably_damaging(0.958) TCGA-E7-A5KE-01 11 62521563 62521563 C T ZBTB3 5'UTR 0.28 TCGA-E7-A5KE-01 11 64084953 64084953 C - TRMT112 Frame_Shift_Del p.V16Wfs*30 0.38 TCGA-E7-A5KE-01 11 66136088 66136088 G T SLC29A2 Missense_Mutation p.S157Y 0.36 deleterious(0.02) probably_damaging(0.914) TCGA-E7-A5KE-01 11 66610719 66610719 C A C11orf80 3'UTR 0.30 TCGA-E7-A5KE-01 11 68181362 68181362 C T LRP5 Silent p.L903L 0.19 TCGA-E7-A5KE-01 11 95546198 95546198 T C CEP57 Missense_Mutation p.I102T 0.36 tolerated(0.44) benign(0.009) TCGA-E7-A5KE-01 11 9871579 9871579 C A SBF2 Missense_Mutation p.D933Y 0.93 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 12 107372404 107372404 A G MTERFD3 Missense_Mutation p.L30S 0.30 tolerated(0.17) benign(0.007) TCGA-E7-A5KE-01 12 109644569 109644569 G A ACACB Missense_Mutation p.E990K 0.73 tolerated(0.1) possibly_damaging(0.507) TCGA-E7-A5KE-01 12 110824155 110824155 A G ANAPC7 Missense_Mutation p.M299T 0.67 tolerated(0.47) benign(0.019) TCGA-E7-A5KE-01 12 113645245 113645245 C G IQCD Missense_Mutation p.E243Q 0.21 tolerated(0.09) possibly_damaging(0.728) TCGA-E7-A5KE-01 12 117402575 117402575 G A FBXW8 Missense_Mutation p.D251N 0.24 tolerated(0.34) benign(0.003) TCGA-E7-A5KE-01 12 120611929 120611929 G C GCN1L1 Missense_Mutation p.Q380E 0.16 benign(0.192) TCGA-E7-A5KE-01 12 120941811 120941811 G C COQ5 Missense_Mutation p.Q282E 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-E7-A5KE-01 12 121735552 121735552 C G CAMKK2 5'UTR 0.14 TCGA-E7-A5KE-01 12 12300491 12300491 C G LRP6 Splice_Site p.X1069_splice 0.28 TCGA-E7-A5KE-01 12 21981935 21981935 T C ABCC9 Missense_Mutation p.Y1209C 0.23 deleterious(0.05) possibly_damaging(0.879) TCGA-E7-A5KE-01 12 52714766 52714766 G A KRT83 Silent p.L118L 0.23 TCGA-E7-A5KE-01 12 55356881 55356881 G A TESPA1 Silent p.I267I 0.33 TCGA-E7-A5KE-01 12 56510414 56510414 T - RPL41 5'UTR 0.23 TCGA-E7-A5KE-01 12 57440393 57440393 C T MYO1A Missense_Mutation p.E195K 0.29 deleterious(0) probably_damaging(0.998) TCGA-E7-A5KE-01 12 57490241 57490241 G T STAT6 3'UTR 0.15 TCGA-E7-A5KE-01 12 57588266 57588266 G A LRP1 Missense_Mutation p.S2683N 0.25 benign(0.046) TCGA-E7-A5KE-01 12 661685 661685 G A B4GALNT3 Missense_Mutation p.E421K 0.23 tolerated(0.08) benign(0.008) TCGA-E7-A5KE-01 12 6932889 6932889 C T GPR162 5'UTR 0.21 TCGA-E7-A5KE-01 12 6961295 6961295 A C USP5 5'UTR 0.16 TCGA-E7-A5KE-01 12 6967703 6967703 G A USP5 Missense_Mutation p.G327D 0.25 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 12 6981312 6981312 C T SPSB2 Intron 0.21 TCGA-E7-A5KE-01 12 7050046 7050046 C G ATN1 Missense_Mutation p.S1073C 0.23 probably_damaging(0.978) TCGA-E7-A5KE-01 12 72233514 72233514 G C TBC1D15 5'UTR 0.25 TCGA-E7-A5KE-01 12 7261791 7261791 C G C1RL 5'UTR 0.19 TCGA-E7-A5KE-01 12 81102759 81102759 C A MYF6 3'UTR 0.72 TCGA-E7-A5KE-01 12 89917931 89917931 C T GALNT4 Silent p.R132R 0.24 TCGA-E7-A5KE-01 13 100153727 100153727 G A TM9SF2 5'UTR 0.31 TCGA-E7-A5KE-01 13 111164536 111164536 T G COL4A2 Nonstop_Mutation p.*1713Gext*87 0.56 TCGA-E7-A5KE-01 13 73346875 73346875 C G DIS3 Missense_Mutation p.V448L 0.55 deleterious(0) probably_damaging(0.977) TCGA-E7-A5KE-01 14 102550319 102550319 G T HSP90AA1 Missense_Mutation p.N505K 0.40 deleterious_low_confidence(0) unknown(0) TCGA-E7-A5KE-01 14 21945109 21945109 A G RAB2B 5'UTR 0.38 TCGA-E7-A5KE-01 14 25281914 25281914 C T STXBP6 3'UTR 0.85 TCGA-E7-A5KE-01 14 45693450 45693450 C T MIS18BP1 Silent p.K780K 0.10 TCGA-E7-A5KE-01 14 50238345 50238345 C T KLHDC2 Silent p.L63L 0.21 TCGA-E7-A5KE-01 14 59814260 59814260 G A DAAM1 Silent p.L703L 0.20 TCGA-E7-A5KE-01 14 62541904 62541904 A G SYT16 Missense_Mutation p.E263G 0.73 deleterious(0.04) benign(0.003) TCGA-E7-A5KE-01 14 64520009 64520009 T C SYNE2 Silent p.N3126N 0.45 TCGA-E7-A5KE-01 14 68042567 68042567 G A PLEKHH1 Missense_Mutation p.D733N 0.56 deleterious(0.03) benign(0.002) TCGA-E7-A5KE-01 14 73673092 73673092 A C PSEN1 Splice_Site p.X290_splice 0.39 TCGA-E7-A5KE-01 14 94139721 94139721 C T UNC79 Missense_Mutation p.R2083C 0.35 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KE-01 15 31342656 31342656 C A TRPM1 Missense_Mutation p.V482L 0.37 tolerated(0.34) benign(0.002) TCGA-E7-A5KE-01 15 39886599 39886599 C T THBS1 Nonsense_Mutation p.Q1155* 0.89 TCGA-E7-A5KE-01 15 42136675 42136675 G T PLA2G4B Missense_Mutation p.V527L 0.39 tolerated(0.11) benign(0.131) TCGA-E7-A5KE-01 15 44829366 44829366 C T EIF3J 5'UTR 0.22 TCGA-E7-A5KE-01 15 45414398 45414398 C G DUOXA1 Missense_Mutation p.G64R 0.20 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 15 48802322 48802322 G A FBN1 Missense_Mutation p.R545C 0.37 probably_damaging(0.977) TCGA-E7-A5KE-01 15 80872861 80872861 A G ARNT2 Missense_Mutation p.T575A 0.62 tolerated(0.22) benign(0.027) TCGA-E7-A5KE-01 15 90764281 90764281 G A SEMA4B Missense_Mutation p.R184H 0.52 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 15 90764706 90764706 C T SEMA4B Silent p.L235L 0.62 TCGA-E7-A5KE-01 16 12172715 12172715 G A SNX29 Missense_Mutation p.G449R 0.21 tolerated(0.32) benign(0.041) TCGA-E7-A5KE-01 16 15761204 15761204 G A NDE1 Missense_Mutation p.E49K 0.34 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 16 30762636 30762636 G A PHKG2 Intron 0.33 TCGA-E7-A5KE-01 16 3339931 3339931 C G ZNF263 Silent p.S475S 0.51 TCGA-E7-A5KE-01 16 51173848 51173848 A T SALL1 Missense_Mutation p.L762H 0.93 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KE-01 16 77232204 77232204 G A MON1B Silent p.%3D 0.31 TCGA-E7-A5KE-01 17 14205340 14205340 G A HS3ST3B1 Missense_Mutation p.E169K 0.32 deleterious(0) probably_damaging(0.995) TCGA-E7-A5KE-01 17 17697755 17697755 C G RAI1 Nonsense_Mutation p.S498* 0.23 TCGA-E7-A5KE-01 17 3445955 3445955 C G TRPV3 Silent p.G168G 0.98 TCGA-E7-A5KE-01 17 38975915 38975915 G A KRT10 Silent p.A409A 0.33 TCGA-E7-A5KE-01 17 42979927 42979927 G A CCDC103 Silent p.P157P 0.24 TCGA-E7-A5KE-01 17 4578244 4578244 G A PELP1 Missense_Mutation p.R428W 0.22 probably_damaging(0.999) TCGA-E7-A5KE-01 17 48264876 48264876 G C COL1A1 Missense_Mutation p.P1131R 0.33 unknown(0) TCGA-E7-A5KE-01 17 57752153 57752153 G A CLTC Missense_Mutation p.R837K 0.23 tolerated(0.44) benign(0.016) TCGA-E7-A5KE-01 17 650113 650113 C T GEMIN4 Silent p.T390T 0.04 TCGA-E7-A5KE-01 17 65942064 65942064 A T BPTF Missense_Mutation p.T2414S 0.21 benign(0.255) TCGA-E7-A5KE-01 17 71334786 71334786 G A SDK2 Silent p.P2153P 0.28 TCGA-E7-A5KE-01 17 73895041 73895041 C A MRPL38 Missense_Mutation p.V345L 0.69 tolerated(0.72) benign(0.077) TCGA-E7-A5KE-01 17 76677108 76677108 C T CYTH1 Missense_Mutation p.G303E 0.25 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 17 80196979 80196979 C T SLC16A3 3'UTR 0.25 TCGA-E7-A5KE-01 18 19444607 19444607 C T MIB1 Nonsense_Mutation p.R1001* 0.22 TCGA-E7-A5KE-01 18 60642719 60642719 C A PHLPP1 Missense_Mutation p.T1282N 0.92 deleterious(0.02) probably_damaging(0.998) TCGA-E7-A5KE-01 19 11617240 11617240 T A ECSIT Missense_Mutation p.E352V 0.52 tolerated(0.06) possibly_damaging(0.558) TCGA-E7-A5KE-01 19 11617241 11617241 C A ECSIT Nonsense_Mutation p.E352* 0.49 TCGA-E7-A5KE-01 19 13221040 13221040 G A TRMT1 Silent p.S317S 0.63 TCGA-E7-A5KE-01 19 17306266 17306266 G A MYO9B Missense_Mutation p.A1344T 0.84 tolerated(0.71) benign(0.001) TCGA-E7-A5KE-01 19 18779479 18779479 C T KLHL26 Silent p.A424A 0.43 TCGA-E7-A5KE-01 19 19648240 19648240 C T YJEFN3 Silent p.F269F 0.79 TCGA-E7-A5KE-01 19 2110747 2110747 G A AP3D1 Missense_Mutation p.S1045F 0.69 deleterious(0.01) benign(0.044) TCGA-E7-A5KE-01 19 21477539 21477539 T C ZNF708 Missense_Mutation p.M77V 0.27 tolerated(0.47) benign(0.001) TCGA-E7-A5KE-01 19 30936382 30936382 G A ZNF536 Missense_Mutation p.R638Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KE-01 19 35175619 35175619 A C ZNF302 Missense_Mutation p.E226A 0.24 deleterious(0.01) probably_damaging(0.966) TCGA-E7-A5KE-01 19 36339252 36339252 C T NPHS1 Silent p.A406A 0.18 TCGA-E7-A5KE-01 19 38946301 38946301 C G RYR1 Silent p.L567L 0.13 TCGA-E7-A5KE-01 19 39039048 39039048 G C RYR1 Missense_Mutation p.K4090N 0.38 benign(0.003) TCGA-E7-A5KE-01 19 43016551 43016551 G C CEACAM1 Missense_Mutation p.L443V 0.23 tolerated(0.11) possibly_damaging(0.899) TCGA-E7-A5KE-01 19 45860781 45860781 G A ERCC2 Missense_Mutation p.A443V 0.55 deleterious(0.01) possibly_damaging(0.792) TCGA-E7-A5KE-01 19 48956011 48956011 C T GRWD1 Missense_Mutation p.T357I 0.68 deleterious(0) probably_damaging(0.998) TCGA-E7-A5KE-01 19 50192947 50192947 T G ADM5 5'UTR 0.38 TCGA-E7-A5KE-01 19 50967791 50967791 T G MYBPC2 Splice_Site p.X1139_splice 0.18 TCGA-E7-A5KE-01 19 51506273 51506273 C T KLK9 3'UTR 0.28 TCGA-E7-A5KE-01 19 54742891 54742891 C T LILRA6 Missense_Mutation p.G462R 0.71 deleterious(0.05) possibly_damaging(0.461) TCGA-E7-A5KE-01 19 57646841 57646841 G A ZIM3 Silent p.F288F 0.22 TCGA-E7-A5KE-01 19 6908776 6908776 C T EMR1 Missense_Mutation p.S372F 0.17 deleterious(0) probably_damaging(0.957) TCGA-E7-A5KE-01 19 8464920 8464920 C T RAB11B Missense_Mutation p.R72C 0.15 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-E7-A5KE-01 1 108115856 108115856 G A VAV3 3'UTR 0.77 TCGA-E7-A5KE-01 1 109268393 109268393 T C FNDC7 Missense_Mutation p.V293A 0.28 deleterious(0) possibly_damaging(0.489) TCGA-E7-A5KE-01 1 111146940 111146940 G T KCNA2 Nonsense_Mutation p.Y155* 0.26 TCGA-E7-A5KE-01 1 11740484 11740484 G A MAD2L2 Missense_Mutation p.L29F 0.48 tolerated(0.71) possibly_damaging(0.754) TCGA-E7-A5KE-01 1 14107633 14107633 G C PRDM2 Missense_Mutation p.E1115Q 0.18 unknown(0) TCGA-E7-A5KE-01 1 154474266 154474266 G A SHE Silent p.G79G 0.13 TCGA-E7-A5KE-01 1 159409971 159409971 G T OR10J1 Silent p.L141L 0.57 TCGA-E7-A5KE-01 1 186370158 186370158 G A OCLM 5'UTR 0.56 TCGA-E7-A5KE-01 1 19029751 19029751 C T PAX7 Silent p.S372S 0.17 TCGA-E7-A5KE-01 1 200972877 200972877 G C KIF21B Nonsense_Mutation p.S350* 0.36 TCGA-E7-A5KE-01 1 205312523 205312523 C T KLHDC8A Silent p.A70A 0.41 TCGA-E7-A5KE-01 1 205498157 205498157 C A CDK18 Silent p.A365A 0.38 TCGA-E7-A5KE-01 1 211652651 211652651 C T RD3 Silent p.A105A 0.54 TCGA-E7-A5KE-01 1 211956838 211956838 A T LPGAT1 Missense_Mutation p.S154T 0.29 tolerated(0.32) benign(0.021) TCGA-E7-A5KE-01 1 228403354 228403354 C T OBSCN Missense_Mutation p.S640L 0.80 benign(0.191) TCGA-E7-A5KE-01 1 237049648 237049648 G A MTR Nonsense_Mutation p.W944* 0.41 TCGA-E7-A5KE-01 1 24434590 24434590 G C MYOM3 Intron 0.17 TCGA-E7-A5KE-01 1 24484269 24484269 G A IFNLR1 Missense_Mutation p.T305M 0.21 tolerated(0.15) benign(0.013) TCGA-E7-A5KE-01 1 24782750 24782750 G A NIPAL3 Missense_Mutation p.V254I 0.24 tolerated(0.44) benign(0.004) TCGA-E7-A5KE-01 1 39340564 39340564 G A GJA9 Nonsense_Mutation p.Q403* 0.26 TCGA-E7-A5KE-01 1 40751594 40751594 C T ZMPSTE24 Intron 0.24 TCGA-E7-A5KE-01 1 41236526 41236526 C T NFYC 3'UTR 0.15 TCGA-E7-A5KE-01 1 42671493 42671493 C G FOXJ3 Missense_Mutation p.M190I 0.59 tolerated(0.15) benign(0.026) TCGA-E7-A5KE-01 1 53387303 53387303 G T ECHDC2 Silent p.R15R 0.33 TCGA-E7-A5KE-01 1 6653596 6653596 G A KLHL21 Silent p.S541S 0.25 TCGA-E7-A5KE-01 1 78958966 78958966 C T PTGFR Nonsense_Mutation p.Q180* 0.25 TCGA-E7-A5KE-01 1 909230 909230 G A PLEKHN1 Silent p.Q484Q 0.54 TCGA-E7-A5KE-01 20 1424528 1424528 C A NSFL1C Missense_Mutation p.D329Y 0.32 tolerated(0.29) benign(0.002) TCGA-E7-A5KE-01 20 22562492 22562492 G C FOXA2 Missense_Mutation p.S463C 0.03 deleterious(0) probably_damaging(0.996) TCGA-E7-A5KE-01 20 23016438 23016438 G T SSTR4 Silent p.S106S 0.40 TCGA-E7-A5KE-01 20 25457666 25457666 C T NINL Missense_Mutation p.R754H 0.34 tolerated(0.2) benign(0.212) TCGA-E7-A5KE-01 20 30193328 30193328 C G ID1 Silent p.A46A 0.74 TCGA-E7-A5KE-01 20 30915379 30915379 G A KIF3B Missense_Mutation p.R628Q 0.16 deleterious(0.01) benign(0.029) TCGA-E7-A5KE-01 20 32232227 32232227 C G CBFA2T2 Missense_Mutation p.F530L 0.03 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 20 32232409 32232409 C G CBFA2T2 Nonsense_Mutation p.S591* 0.03 TCGA-E7-A5KE-01 20 33147544 33147544 C T MAP1LC3A Missense_Mutation p.R74C 0.25 tolerated(0.05) benign(0.085) TCGA-E7-A5KE-01 20 42744351 42744351 C T JPH2 Missense_Mutation p.R655Q 0.28 tolerated(0.34) benign(0.046) TCGA-E7-A5KE-01 20 45216781 45216781 G A SLC13A3 Silent p.F346F 0.27 TCGA-E7-A5KE-01 20 47587828 47587828 C T ARFGEF2 Silent p.L454L 0.56 TCGA-E7-A5KE-01 20 62369618 62369618 C G LIME1 Silent p.P117P 0.54 TCGA-E7-A5KE-01 21 35257366 35257366 C G ITSN1 Missense_Mutation p.I1566M 0.22 deleterious(0) probably_damaging(0.955) TCGA-E7-A5KE-01 22 17578799 17578799 C T IL17RA Silent p.P92P 0.29 TCGA-E7-A5KE-01 22 26247473 26247473 G A MYO18B Missense_Mutation p.R1271Q 0.50 deleterious(0.02) benign(0.121) TCGA-E7-A5KE-01 22 31289717 31289717 G A OSBP2 Silent p.R729R 0.23 TCGA-E7-A5KE-01 22 32629011 32629011 T A SLC5A4 Missense_Mutation p.Q299L 0.09 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KE-01 22 37915013 37915013 C T CARD10 Silent p.V65V 0.29 TCGA-E7-A5KE-01 2 135180409 135180409 C T MGAT5 Silent p.I571I 0.33 TCGA-E7-A5KE-01 2 162091940 162091940 G A TANK Missense_Mutation p.E397K 0.23 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KE-01 2 198948628 198948628 C A PLCL1 Silent p.R129R 0.57 TCGA-E7-A5KE-01 2 211068063 211068063 G A ACADL Missense_Mutation p.H326Y 0.29 deleterious(0.01) possibly_damaging(0.633) TCGA-E7-A5KE-01 2 212285216 212285216 T C ERBB4 Missense_Mutation p.N1029D 0.07 tolerated(0.54) benign(0.25) TCGA-E7-A5KE-01 2 215645910 215645910 C T BARD1 Missense_Mutation p.D230N 0.31 tolerated(0.16) benign(0.199) TCGA-E7-A5KE-01 2 220073268 220073268 C T ZFAND2B Intron 0.39 TCGA-E7-A5KE-01 2 233246351 233246351 C G ALPP Missense_Mutation p.A485G 0.29 deleterious(0.03) possibly_damaging(0.589) TCGA-E7-A5KE-01 2 233839354 233839354 G A NGEF Missense_Mutation p.R83W 0.47 tolerated_low_confidence(0.14) benign(0.232) TCGA-E7-A5KE-01 2 240961743 240961743 G A NDUFA10 Silent p.S30S 0.53 TCGA-E7-A5KE-01 2 242206223 242206223 G A HDLBP Missense_Mutation p.P21L 0.44 tolerated_low_confidence(0.25) benign(0.043) TCGA-E7-A5KE-01 2 27664740 27664740 C T NRBP1 3'UTR 0.26 TCGA-E7-A5KE-01 2 29072959 29072959 C T TRMT61B 3'UTR 0.64 TCGA-E7-A5KE-01 2 44176792 44176792 C T LRPPRC Missense_Mutation p.E562K 0.37 tolerated(0.06) benign(0.167) TCGA-E7-A5KE-01 2 48586221 48586221 G A FOXN2 Silent p.P191P 0.20 TCGA-E7-A5KE-01 2 68753371 68753371 C T APLF Silent p.S267S 0.27 TCGA-E7-A5KE-01 2 74725239 74725239 C T LBX2 Missense_Mutation p.A134T 0.66 tolerated(0.3) probably_damaging(0.999) TCGA-E7-A5KE-01 2 90259991 90259991 T - IGKV1D-8 Frame_Shift_Del p.L32Yfs*16 0.34 TCGA-E7-A5KE-01 3 111356063 111356063 G A CD96 Missense_Mutation p.E464K 0.26 tolerated(0.07) benign(0.02) TCGA-E7-A5KE-01 3 122478157 122478157 A T HSPBAP1 Missense_Mutation p.S161R 0.09 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KE-01 3 128889334 128889334 G T CNBP Missense_Mutation p.H168N 0.18 deleterious(0) probably_damaging(0.938) TCGA-E7-A5KE-01 3 138665213 138665213 C T FOXL2 Missense_Mutation p.E118K 0.42 deleterious(0) possibly_damaging(0.874) TCGA-E7-A5KE-01 3 140419753 140419753 G A TRIM42 Silent p.G703G 0.13 TCGA-E7-A5KE-01 3 142268453 142268453 G A ATR Silent p.L1013L 0.40 TCGA-E7-A5KE-01 3 147128524 147128524 G T ZIC1 Missense_Mutation p.G209C 0.16 deleterious(0) probably_damaging(0.996) TCGA-E7-A5KE-01 3 179460079 179460079 C T USP13 Missense_Mutation p.T492M 0.56 deleterious(0.04) possibly_damaging(0.719) TCGA-E7-A5KE-01 3 193160211 193160211 C T ATP13A4 Missense_Mutation p.E763K 0.29 tolerated(0.44) benign(0.012) TCGA-E7-A5KE-01 3 196198627 196198627 A G RNF168 3'UTR 0.22 TCGA-E7-A5KE-01 3 32995475 32995475 C T CCR4 Silent p.C187C 0.17 TCGA-E7-A5KE-01 3 38317879 38317879 A G SLC22A13 Missense_Mutation p.I447V 0.45 tolerated(1) benign(0.006) TCGA-E7-A5KE-01 3 3886420 3886420 G A LRRN1 Missense_Mutation p.C32Y 0.29 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 3 48475192 48475192 C T CCDC51 Silent p.R134R 0.57 TCGA-E7-A5KE-01 3 49689061 49689061 C T BSN Missense_Mutation p.S691F 0.20 unknown(0) TCGA-E7-A5KE-01 3 53215506 53215506 G A PRKCD Silent p.T141T 0.22 TCGA-E7-A5KE-01 3 69928434 69928434 T G MITF Missense_Mutation p.F85C 0.21 tolerated(0.06) possibly_damaging(0.634) TCGA-E7-A5KE-01 3 86010775 86010775 G A CADM2 Silent p.A309A 0.29 TCGA-E7-A5KE-01 3 9877083 9877083 G - TTLL3 Frame_Shift_Del p.K887Sfs*? 0.33 TCGA-E7-A5KE-01 4 103590161 103590161 G C MANBA Missense_Mutation p.Q426E 0.30 tolerated(0.91) benign(0.004) TCGA-E7-A5KE-01 4 146686741 146686741 C G ZNF827 Missense_Mutation p.G1004R 0.98 deleterious(0.04) probably_damaging(0.995) TCGA-E7-A5KE-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.99 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 4 185606762 185606762 G A PRIMPOL Missense_Mutation p.E407K 0.18 probably_damaging(0.917) TCGA-E7-A5KE-01 4 1985626 1985626 C T NELFA Silent p.P428P 0.27 TCGA-E7-A5KE-01 4 53229 53229 C T ZNF595 5'UTR 0.10 TCGA-E7-A5KE-01 4 71509143 71509143 G A ENAM Missense_Mutation p.G667E 0.34 tolerated(0.11) benign(0.31) TCGA-E7-A5KE-01 4 94750483 94750483 G T ATOH1 Missense_Mutation p.V136L 0.27 tolerated(0.4) benign(0.001) TCGA-E7-A5KE-01 5 110427939 110427939 T G WDR36 5'UTR 0.61 TCGA-E7-A5KE-01 5 121412633 121412633 G C LOX Missense_Mutation p.S232C 0.50 tolerated(0.15) possibly_damaging(0.676) TCGA-E7-A5KE-01 5 127713504 127713504 C G FBN2 Missense_Mutation p.S597T 0.32 deleterious(0.02) possibly_damaging(0.536) TCGA-E7-A5KE-01 5 134106669 134106669 G A DDX46 Missense_Mutation p.E143K 0.51 tolerated(0.38) possibly_damaging(0.636) TCGA-E7-A5KE-01 5 135549201 135549201 C G TRPC7 Silent p.L837L 0.43 TCGA-E7-A5KE-01 5 137522831 137522831 T C KIF20A Missense_Mutation p.L801P 0.36 tolerated(0.07) possibly_damaging(0.649) TCGA-E7-A5KE-01 5 140683201 140683201 T G SLC25A2 Missense_Mutation p.N78H 0.33 deleterious(0.01) benign(0.337) TCGA-E7-A5KE-01 5 140774633 140774633 G A PCDHGA8 Silent p.Q751Q 0.25 TCGA-E7-A5KE-01 5 141059562 141059562 G A ARAP3 Silent p.D164D 0.33 TCGA-E7-A5KE-01 5 159821355 159821355 G A C5orf54 Silent p.F381F 0.60 TCGA-E7-A5KE-01 5 176778705 176778705 C T LMAN2 5'UTR 0.54 TCGA-E7-A5KE-01 5 178199433 178199433 G T AACSP1 RNA 0.61 TCGA-E7-A5KE-01 5 179221076 179221076 G A LTC4S 5'UTR 0.09 TCGA-E7-A5KE-01 5 179252156 179252156 A G SQSTM1 Silent p.P228P 0.27 TCGA-E7-A5KE-01 5 179743797 179743797 A T GFPT2 Silent p.I373I 0.67 TCGA-E7-A5KE-01 5 180582803 180582803 C - OR2V2 Frame_Shift_Del p.L289Sfs*5 0.47 TCGA-E7-A5KE-01 5 3600305 3600305 C G IRX1 Missense_Mutation p.P415A 0.39 tolerated(0.44) benign(0.016) TCGA-E7-A5KE-01 5 37379416 37379416 C T WDR70 5'UTR 0.57 TCGA-E7-A5KE-01 5 40775549 40775549 C A PRKAA1 Missense_Mutation p.G109V 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-E7-A5KE-01 5 43280141 43280141 T C NIM1K Silent p.N207N 0.65 TCGA-E7-A5KE-01 5 63257323 63257323 A G HTR1A Missense_Mutation p.I75T 0.66 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 6 108496045 108496045 C G NR2E1 Silent p.G59G 0.92 TCGA-E7-A5KE-01 6 152831463 152831463 G C SYNE1 Missense_Mutation p.S149C 0.49 possibly_damaging(0.664) TCGA-E7-A5KE-01 6 159460201 159460201 G A TAGAP Missense_Mutation p.T243I 0.88 deleterious(0.01) possibly_damaging(0.694) TCGA-E7-A5KE-01 6 24666976 24666976 C T TDP2 Missense_Mutation p.D39N 0.23 deleterious(0.01) benign(0.243) TCGA-E7-A5KE-01 6 30569929 30569929 C T PPP1R10 Missense_Mutation p.E833K 0.23 tolerated_low_confidence(0.13) unknown(0) TCGA-E7-A5KE-01 6 33405818 33405818 C T SYNGAP1 Missense_Mutation p.S379L 0.29 tolerated_low_confidence(0.37) benign(0.32) TCGA-E7-A5KE-01 6 35782371 35782371 C T LHFPL5 Missense_Mutation p.S154L 0.27 deleterious(0) possibly_damaging(0.622) TCGA-E7-A5KE-01 6 41889508 41889508 G A BYSL Missense_Mutation p.E70K 0.17 deleterious(0.02) benign(0.278) TCGA-E7-A5KE-01 6 42016448 42016448 C G TAF8 5'Flank 0.10 TCGA-E7-A5KE-01 6 43152561 43152561 C A CUL9 Silent p.L171L 0.29 TCGA-E7-A5KE-01 6 44221372 44221372 A G HSP90AB1 3'UTR 0.33 TCGA-E7-A5KE-01 6 7182181 7182181 G C RREB1 Missense_Mutation p.D13H 0.26 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KE-01 7 100320820 100320820 C T EPO 3'UTR 0.41 TCGA-E7-A5KE-01 7 102585038 102585038 T C LRRC17 Missense_Mutation p.I437T 0.60 deleterious_low_confidence(0.01) benign(0.282) TCGA-E7-A5KE-01 7 102732966 102732966 C G ARMC10 Missense_Mutation p.L191V 0.37 tolerated(0.06) probably_damaging(0.983) TCGA-E7-A5KE-01 7 102939929 102939929 G A PMPCB Missense_Mutation p.E94K 0.33 tolerated(0.2) benign(0.02) TCGA-E7-A5KE-01 7 107823175 107823175 C T NRCAM Missense_Mutation p.E832K 0.25 tolerated(0.05) possibly_damaging(0.904) TCGA-E7-A5KE-01 7 108154982 108154982 C G PNPLA8 Missense_Mutation p.K318N 0.29 deleterious(0) possibly_damaging(0.461) TCGA-E7-A5KE-01 7 127014673 127014673 G T ZNF800 Missense_Mutation p.F239L 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-E7-A5KE-01 7 146825861 146825861 G A CNTNAP2 Missense_Mutation p.S339N 0.04 tolerated(1) benign(0.03) TCGA-E7-A5KE-01 7 154735818 154735818 C T PAXIP1-AS2 Silent p.P90P 0.34 TCGA-E7-A5KE-01 7 30544378 30544378 G A GGCT 5'UTR 0.31 TCGA-E7-A5KE-01 7 39991239 39991239 G C CDK13 Missense_Mutation p.Q333H 0.33 tolerated(0.06) unknown(0) TCGA-E7-A5KE-01 7 4152939 4152939 G A SDK1 Silent p.V1151V 0.37 TCGA-E7-A5KE-01 7 4900821 4900821 T A PAPOLB Silent p.V206V 0.18 TCGA-E7-A5KE-01 7 72873956 72873956 A G BAZ1B Silent p.A1114A 0.67 TCGA-E7-A5KE-01 7 82580665 82580665 C T PCLO Missense_Mutation p.S3080N 0.35 unknown(0) TCGA-E7-A5KE-01 8 12958112 12958112 G A DLC1 Silent p.P578P 0.56 TCGA-E7-A5KE-01 8 144458799 144458799 G A RHPN1 Missense_Mutation p.G94D 0.44 tolerated(0.09) benign(0.009) TCGA-E7-A5KE-01 8 144993968 144993968 G C PLEC Missense_Mutation p.L3478V 0.29 benign(0.084) TCGA-E7-A5KE-01 8 32600275 32600275 C T NRG1 Intron 0.38 TCGA-E7-A5KE-01 8 48648027 48648027 T A SPIDR 3'UTR 0.51 TCGA-E7-A5KE-01 8 67357493 67357493 G T ADHFE1 Missense_Mutation p.D132Y 0.36 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 9 113170929 113170929 C G SVEP1 Missense_Mutation p.K2317N 0.54 probably_damaging(0.925) TCGA-E7-A5KE-01 9 118950124 118950124 G A PAPPA Silent p.T369T 0.91 TCGA-E7-A5KE-01 9 136218807 136218807 C G SURF1 Silent p.L288L 0.63 TCGA-E7-A5KE-01 9 136218913 136218913 C T SURF1 Intron 0.43 TCGA-E7-A5KE-01 9 140093442 140093442 C T TPRN Silent p.K574K 0.26 TCGA-E7-A5KE-01 9 86276604 86276604 C T UBQLN1 3'UTR 1.00 TCGA-E7-A5KE-01 9 92220919 92220919 G - GADD45G Frame_Shift_Del p.E136Rfs*33 0.52 TCGA-E7-A5KE-01 X 101768985 101768985 G A TMSB15A 3'UTR 0.25 TCGA-E7-A5KE-01 X 102968912 102968912 C G TMEM31 Missense_Mutation p.L165V 0.13 deleterious_low_confidence(0) benign(0.341) TCGA-E7-A5KE-01 X 11197512 11197512 C A ARHGAP6 Missense_Mutation p.D464Y 0.22 deleterious(0) probably_damaging(1) TCGA-E7-A5KE-01 X 125298729 125298729 G A DCAF12L2 Silent p.S393S 0.29 TCGA-E7-A5KE-01 X 139586712 139586712 G A SOX3 Missense_Mutation p.R172C 0.16 deleterious(0) probably_damaging(0.996) TCGA-E7-A5KE-01 X 149826366 149826366 A G MTM1 Missense_Mutation p.S376G 0.52 deleterious(0) probably_damaging(0.998) TCGA-E7-A5KE-01 X 150840122 150840122 A G PASD1 Silent p.K436K 0.27 TCGA-E7-A5KE-01 X 19031967 19031967 G A GPR64 Silent p.S312S 0.26 TCGA-E7-A5KE-01 X 27839430 27839430 C T MAGEB10 Nonsense_Mutation p.R3* 0.23 TCGA-E7-A5KE-01 X 41333528 41333528 C T NYX Silent p.F274F 0.26 TCGA-E7-A5KE-01 X 44942763 44942802 GCAGGAAATCTTCTAAGCCATGTTGGTCATACCATATTGG - KDM6A Frame_Shift_Del p.G1116* 0.23 TCGA-E7-A5KE-01 X 47041580 47041581 - C RBM10 Frame_Shift_Ins p.Q603Pfs*25 0.38 TCGA-E7-A5KE-01 X 53561612 53561612 C T HUWE1 Silent p.E4232E 0.21 TCGA-E7-A5KE-01 X 69649376 69649376 G C GDPD2 Missense_Mutation p.G324R 0.24 tolerated(0.29) benign(0.222) TCGA-E7-A5KE-01 X 78427386 78427386 T A GPR174 Missense_Mutation p.F294L 0.23 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KE-01 X 84634271 84634271 C T POF1B Silent p.V63V 0.41 TCGA-E7-A5KE-01 X 91133139 91133140 - A PCDH11X Frame_Shift_Ins p.Q636Tfs*11 0.33 TCGA-E7-A5KE-01 X 92928230 92928230 G A NAP1L3 Missense_Mutation p.S25L 0.21 tolerated_low_confidence(0.13) probably_damaging(0.921) TCGA-E7-A5KF-01 10 102059380 102059380 G C PKD2L1 Missense_Mutation p.Q149E 0.54 tolerated(0.16) benign(0.314) TCGA-E7-A5KF-01 10 102505861 102505861 G A PAX2 5'UTR 0.47 TCGA-E7-A5KF-01 10 104176714 104176714 C T PSD Missense_Mutation p.E28K 0.41 tolerated_low_confidence(0.12) benign(0.107) TCGA-E7-A5KF-01 10 18122665 18122665 G A MRC1 Silent p.L225L 0.93 TCGA-E7-A5KF-01 10 5254976 5254976 G C AKR1C4 Missense_Mutation p.V234L 0.45 tolerated(0.09) benign(0.064) TCGA-E7-A5KF-01 10 72298137 72298137 G A PALD1 Silent p.P475P 0.47 TCGA-E7-A5KF-01 10 91505673 91505673 G A KIF20B Silent p.Q1311Q 0.58 TCGA-E7-A5KF-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.97 TCGA-E7-A5KF-01 10 96827444 96827444 G C CYP2C8 Nonsense_Mutation p.S58* 0.50 TCGA-E7-A5KF-01 11 103907682 103907682 G T DDI1 Missense_Mutation p.E44D 0.99 tolerated(0.16) benign(0.029) TCGA-E7-A5KF-01 11 108175420 108175420 C T ATM Nonsense_Mutation p.Q1839* 1.00 TCGA-E7-A5KF-01 11 117241907 117241907 C T CEP164 Silent p.L293L 0.97 TCGA-E7-A5KF-01 11 1261066 1261066 C T MUC5B Silent p.F1207F 0.32 TCGA-E7-A5KF-01 11 128709136 128709136 G C KCNJ1 Missense_Mutation p.H354D 0.96 tolerated(0.08) probably_damaging(0.996) TCGA-E7-A5KF-01 11 32410688 32410688 C T WT1 Silent p.Q490Q 0.52 TCGA-E7-A5KF-01 11 32605464 32605464 G A EIF3M Missense_Mutation p.E11K 0.59 tolerated(0.73) benign(0.013) TCGA-E7-A5KF-01 11 6651433 6651433 G A DCHS1 Missense_Mutation p.S1531L 0.47 deleterious(0) possibly_damaging(0.526) TCGA-E7-A5KF-01 11 69933970 69933970 C T ANO1 Missense_Mutation p.S74L 0.80 tolerated(0.08) benign(0.283) TCGA-E7-A5KF-01 11 73388934 73388934 C A RAB6A 3'UTR 0.04 TCGA-E7-A5KF-01 11 92534877 92534877 G A FAT3 Missense_Mutation p.E2900K 0.25 probably_damaging(0.969) TCGA-E7-A5KF-01 12 110940137 110940137 G A RAD9B 5'UTR 0.50 TCGA-E7-A5KF-01 12 112460373 112460373 G C ERP29 Missense_Mutation p.D235H 0.46 deleterious(0.02) possibly_damaging(0.581) TCGA-E7-A5KF-01 12 118582395 118582395 C G PEBP1 Silent p.L117L 0.33 TCGA-E7-A5KF-01 12 12300318 12300318 C T LRP6 Missense_Mutation p.E1127K 0.43 deleterious(0.03) probably_damaging(0.978) TCGA-E7-A5KF-01 12 57579428 57579428 C T LRP1 Missense_Mutation p.S2193L 0.43 benign(0.124) TCGA-E7-A5KF-01 12 58112024 58112024 G C OS9 Missense_Mutation p.Q410H 0.12 deleterious(0.04) benign(0.195) TCGA-E7-A5KF-01 12 62708640 62708640 G A USP15 Missense_Mutation p.E140K 0.42 tolerated(0.08) benign(0.051) TCGA-E7-A5KF-01 12 6421383 6421383 G A PLEKHG6 5'UTR 0.41 TCGA-E7-A5KF-01 12 6436760 6436760 G A PLEKHG6 Missense_Mutation p.E671K 0.25 deleterious_low_confidence(0) benign(0.424) TCGA-E7-A5KF-01 12 95397481 95397481 G C NDUFA12 5'UTR 0.48 TCGA-E7-A5KF-01 13 103718440 103718440 C G SLC10A2 Missense_Mutation p.E54Q 0.39 deleterious(0.04) benign(0.213) TCGA-E7-A5KF-01 13 25029219 25029219 G A PARP4 Silent p.I898I 0.51 TCGA-E7-A5KF-01 13 42044712 42044712 G A RGCC 3'UTR 0.33 TCGA-E7-A5KF-01 13 58207319 58207319 G A PCDH17 Silent p.L213L 0.35 TCGA-E7-A5KF-01 13 58298981 58298981 C A PCDH17 Silent p.L1011L 0.43 TCGA-E7-A5KF-01 13 98628963 98628963 G A IPO5 Missense_Mutation p.A23T 0.50 tolerated(0.05) benign(0.019) TCGA-E7-A5KF-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.51 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KF-01 14 105517355 105517355 C G GPR132 Missense_Mutation p.K373N 0.48 deleterious_low_confidence(0.03) benign(0.016) TCGA-E7-A5KF-01 14 24036510 24036510 G A AP1G2 Missense_Mutation p.S5L 0.51 tolerated(0.09) benign(0.003) TCGA-E7-A5KF-01 14 39900843 39900843 G T FBXO33 Nonsense_Mutation p.S175* 0.40 TCGA-E7-A5KF-01 14 59950590 59950590 C T L3HYPDH Missense_Mutation p.E149K 0.67 tolerated(0.79) benign(0.027) TCGA-E7-A5KF-01 14 62233706 62233706 C G SNAPC1 Missense_Mutation p.L81V 0.15 deleterious(0) probably_damaging(0.968) TCGA-E7-A5KF-01 14 71134435 71134435 G C TTC9 Silent p.L187L 0.47 TCGA-E7-A5KF-01 14 74206534 74206534 G A ELMSAN1 Nonsense_Mutation p.Q60* 0.46 TCGA-E7-A5KF-01 15 101791463 101791463 C T CHSY1 Missense_Mutation p.G67R 0.44 tolerated(0.27) benign(0.021) TCGA-E7-A5KF-01 15 43122261 43122261 C T TTBK2 Missense_Mutation p.D103N 0.33 deleterious(0.01) probably_damaging(1) TCGA-E7-A5KF-01 15 43724829 43724829 C G TP53BP1 Missense_Mutation p.E1080Q 0.42 tolerated(0.34) benign(0.13) TCGA-E7-A5KF-01 15 43892837 43892837 C T STRC Missense_Mutation p.E1630K 0.55 deleterious(0) probably_damaging(0.996) TCGA-E7-A5KF-01 15 52667618 52667618 G A MYO5A Silent p.I820I 0.40 TCGA-E7-A5KF-01 15 57731413 57731413 G C CGNL1 Missense_Mutation p.E406Q 0.50 deleterious(0.01) probably_damaging(0.917) TCGA-E7-A5KF-01 15 91312729 91312729 C G BLM Missense_Mutation p.S823C 0.52 deleterious(0.02) probably_damaging(0.928) TCGA-E7-A5KF-01 16 18560901 18560901 G A NOMO2 Silent p.L151L 0.36 TCGA-E7-A5KF-01 16 50258849 50258849 G A PAPD5 Missense_Mutation p.R504K 0.46 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KF-01 16 50642247 50642247 G C NKD1 Missense_Mutation p.E79Q 0.40 tolerated(0.19) benign(0.262) TCGA-E7-A5KF-01 16 50707924 50707924 C T SNX20 Missense_Mutation p.R115Q 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A5KF-01 16 53190976 53190976 C T CHD9 Silent p.I325I 0.57 TCGA-E7-A5KF-01 16 67864421 67864421 G C CENPT Missense_Mutation p.S245C 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-E7-A5KF-01 16 67917777 67917777 C T EDC4 Intron 0.39 TCGA-E7-A5KF-01 16 69369012 69369012 G A COG8 Silent p.I275I 0.50 TCGA-E7-A5KF-01 16 70721760 70721760 C A VAC14 3'UTR 0.50 TCGA-E7-A5KF-01 16 767324 767324 C T METRN Silent p.F273F 0.75 TCGA-E7-A5KF-01 16 89920743 89920743 C G SPIRE2 Missense_Mutation p.A232G 0.61 tolerated(0.18) possibly_damaging(0.516) TCGA-E7-A5KF-01 17 27224617 27224617 C A FLOT2 5'UTR 0.88 TCGA-E7-A5KF-01 17 33849303 33849303 G A SLFN12L Silent p.F32F 0.44 TCGA-E7-A5KF-01 17 3477050 3477050 G A SHPK Silent p.F660F 0.47 TCGA-E7-A5KF-01 17 35620734 35620734 G C ACACA Missense_Mutation p.L395V 0.53 deleterious(0) probably_damaging(0.99) TCGA-E7-A5KF-01 17 35913380 35913380 G A SYNRG Silent p.L815L 0.54 TCGA-E7-A5KF-01 17 3955395 3955395 C T ZZEF1 Missense_Mutation p.E1824K 0.58 deleterious(0.01) possibly_damaging(0.852) TCGA-E7-A5KF-01 17 39994165 39994165 C G KLHL10 5'UTR 0.56 TCGA-E7-A5KF-01 17 41477292 41477292 C T ARL4D Silent p.L64L 0.43 TCGA-E7-A5KF-01 17 44127899 44127899 C T KANSL1 Missense_Mutation p.D674N 0.43 deleterious(0) probably_damaging(0.998) TCGA-E7-A5KF-01 17 4849975 4849975 C G PFN1 Missense_Mutation p.K91N 0.44 deleterious(0.03) benign(0.439) TCGA-E7-A5KF-01 17 73922121 73922121 C G FBF1 Missense_Mutation p.Q272H 0.54 deleterious(0) possibly_damaging(0.588) TCGA-E7-A5KF-01 17 74944133 74944133 C A MGAT5B Missense_Mutation p.F724L 0.44 tolerated(0.31) benign(0.036) TCGA-E7-A5KF-01 17 76046053 76046053 G A TNRC6C Missense_Mutation p.A304T 0.53 tolerated(0.27) benign(0.015) TCGA-E7-A5KF-01 17 76046637 76046637 G A TNRC6C Missense_Mutation p.M498I 0.37 tolerated(0.18) benign(0.014) TCGA-E7-A5KF-01 17 76047001 76047001 G C TNRC6C Missense_Mutation p.D620H 0.37 deleterious(0.01) probably_damaging(0.951) TCGA-E7-A5KF-01 17 78897445 78897445 G T RPTOR Missense_Mutation p.R927L 0.58 deleterious(0.01) benign(0.391) TCGA-E7-A5KF-01 17 78897446 78897446 G T RPTOR Silent p.R927R 0.58 TCGA-E7-A5KF-01 17 80559369 80559369 G A FOXK2 Silent p.Q659Q 0.50 TCGA-E7-A5KF-01 18 28956836 28956836 G C DSG4 5'Flank 0.16 TCGA-E7-A5KF-01 18 33877891 33877891 C A FHOD3 Missense_Mutation p.F31L 0.31 tolerated(0.12) probably_damaging(0.943) TCGA-E7-A5KF-01 18 65179976 65179976 T C DSEL Missense_Mutation p.M634V 0.44 tolerated(0.2) benign(0.017) TCGA-E7-A5KF-01 18 72179754 72179754 C T CNDP2 Silent p.L243L 0.41 TCGA-E7-A5KF-01 18 9593792 9593792 C G PPP4R1 Missense_Mutation p.R90T 0.51 tolerated(0.35) probably_damaging(0.968) TCGA-E7-A5KF-01 19 11226799 11226799 C A LDLR Missense_Mutation p.P539H 0.44 deleterious(0.04) benign(0.225) TCGA-E7-A5KF-01 19 12490764 12490764 G C CTD-3105H18.14 3'UTR 0.45 TCGA-E7-A5KF-01 19 15989725 15989725 G A CYP4F2 Silent p.F473F 0.44 TCGA-E7-A5KF-01 19 19135780 19135780 G T SUGP2 Silent p.L459L 0.16 TCGA-E7-A5KF-01 19 36207490 36207490 G T ZBTB32 Missense_Mutation p.G434W 0.51 deleterious(0.03) probably_damaging(0.995) TCGA-E7-A5KF-01 19 37369132 37369132 C T ZNF345 Missense_Mutation p.S467L 0.13 deleterious(0.03) benign(0.049) TCGA-E7-A5KF-01 19 39694508 39694508 G C SYCN Silent p.L129L 0.43 TCGA-E7-A5KF-01 19 42933030 42933030 G C CXCL17 3'UTR 0.43 TCGA-E7-A5KF-01 19 50912037 50912037 C G POLD1 Intron 0.58 TCGA-E7-A5KF-01 19 51021500 51021500 C T LRRC4B Silent p.V490V 0.50 TCGA-E7-A5KF-01 19 54695668 54695668 G A TSEN34 Missense_Mutation p.E114K 0.48 tolerated(0.12) benign(0.005) TCGA-E7-A5KF-01 19 5915332 5915332 G A CAPS Silent p.%3D 0.46 TCGA-E7-A5KF-01 19 6454677 6454677 C G SLC25A23 Missense_Mutation p.E179Q 0.44 deleterious(0.01) possibly_damaging(0.725) TCGA-E7-A5KF-01 19 8993377 8993377 G C MUC16 Silent p.V13904V 0.39 TCGA-E7-A5KF-01 1 10713622 10713622 G A CASZ1 Missense_Mutation p.S831L 0.42 deleterious_low_confidence(0.05) benign(0.008) TCGA-E7-A5KF-01 1 12164452 12164452 G C TNFRSF8 Missense_Mutation p.K95N 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-E7-A5KF-01 1 12461717 12461717 C G VPS13D Silent p.L3947L 0.56 TCGA-E7-A5KF-01 1 149858534 149858534 C T HIST2H2AC Missense_Mutation p.R4C 0.34 deleterious_low_confidence(0.01) benign(0.012) TCGA-E7-A5KF-01 1 150551566 150551566 G A MCL1 Silent p.V147V 0.42 TCGA-E7-A5KF-01 1 150676602 150676602 G T HORMAD1 Missense_Mutation p.H314N 0.41 tolerated(0.97) benign(0.002) TCGA-E7-A5KF-01 1 150676604 150676604 G A HORMAD1 Missense_Mutation p.S313F 0.33 deleterious(0) possibly_damaging(0.578) TCGA-E7-A5KF-01 1 150676610 150676610 G T HORMAD1 Missense_Mutation p.S311Y 0.35 tolerated(1) benign(0.032) TCGA-E7-A5KF-01 1 155236635 155236635 G A CLK2 Silent p.I240I 0.17 TCGA-E7-A5KF-01 1 156498765 156498765 C T IQGAP3 Missense_Mutation p.G1505D 0.27 deleterious(0.02) benign(0.021) TCGA-E7-A5KF-01 1 16255496 16255496 C T SPEN Nonsense_Mutation p.Q921* 0.24 TCGA-E7-A5KF-01 1 16475402 16475402 G A EPHA2 Silent p.L98L 0.45 TCGA-E7-A5KF-01 1 16914272 16914272 C T NBPF1 Missense_Mutation p.E172K 0.16 deleterious(0.03) possibly_damaging(0.486) TCGA-E7-A5KF-01 1 172579106 172579106 T A SUCO Missense_Mutation p.Y1158N 0.69 deleterious(0.01) possibly_damaging(0.594) TCGA-E7-A5KF-01 1 179660077 179660077 G A TDRD5 Silent p.%3D 0.61 TCGA-E7-A5KF-01 1 181479643 181479643 C T CACNA1E Silent p.I99I 0.54 TCGA-E7-A5KF-01 1 182026425 182026425 C T ZNF648 Missense_Mutation p.E241K 0.68 tolerated(0.27) benign(0.038) TCGA-E7-A5KF-01 1 183486953 183486953 C T SMG7 Nonsense_Mutation p.Q104* 0.60 TCGA-E7-A5KF-01 1 186105883 186105883 G C HMCN1 Missense_Mutation p.E4466Q 0.23 probably_damaging(0.996) TCGA-E7-A5KF-01 1 19443827 19443827 T C UBR4 Missense_Mutation p.I3571V 0.46 possibly_damaging(0.456) TCGA-E7-A5KF-01 1 19992390 19992390 C G HTR6 Missense_Mutation p.I48M 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-E7-A5KF-01 1 200584610 200584610 G A KIF14 Missense_Mutation p.H414Y 0.67 deleterious(0.01) probably_damaging(0.99) TCGA-E7-A5KF-01 1 20067393 20067393 C T TMCO4 Missense_Mutation p.E307K 0.55 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KF-01 1 201982377 201982377 G T ELF3 Missense_Mutation p.K252N 0.72 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KF-01 1 202391784 202391784 C G PPP1R12B Silent p.V153V 0.71 TCGA-E7-A5KF-01 1 215793634 215793634 G A KCTD3 Missense_Mutation p.E708K 0.08 deleterious_low_confidence(0.02) benign(0.062) TCGA-E7-A5KF-01 1 223284770 223284770 G C TLR5 Missense_Mutation p.S535C 0.26 tolerated(0.14) possibly_damaging(0.871) TCGA-E7-A5KF-01 1 228553871 228553871 C T OBSCN Missense_Mutation p.S7344L 0.67 benign(0.001) TCGA-E7-A5KF-01 1 228558954 228558954 C T OBSCN Silent p.F7782F 0.64 TCGA-E7-A5KF-01 1 229730649 229730649 C G TAF5L Missense_Mutation p.D389H 0.71 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KF-01 1 243468068 243468068 G C SDCCAG8 Missense_Mutation p.L243F 0.29 deleterious(0.01) possibly_damaging(0.887) TCGA-E7-A5KF-01 1 245019783 245019783 C G HNRNPU Missense_Mutation p.E630Q 0.29 deleterious(0.01) unknown(0) TCGA-E7-A5KF-01 1 248458281 248458281 G A OR2T12 Silent p.C200C 0.65 TCGA-E7-A5KF-01 1 32279985 32279985 G A SPOCD1 Missense_Mutation p.S317L 0.37 tolerated(0.33) benign(0) TCGA-E7-A5KF-01 1 3659645 3659645 G A TP73-AS1 RNA 0.36 TCGA-E7-A5KF-01 1 3659646 3659646 G A TP73-AS1 RNA 0.36 TCGA-E7-A5KF-01 1 42922645 42922645 G A PPCS Missense_Mutation p.E137K 0.42 tolerated(0.41) benign(0.009) TCGA-E7-A5KF-01 1 43892750 43892750 C G SZT2 Silent p.L1054L 0.43 TCGA-E7-A5KF-01 1 67423838 67423838 G T MIER1 Nonsense_Mutation p.E146* 0.47 TCGA-E7-A5KF-01 20 32251455 32251455 G A C20orf144 Missense_Mutation p.G82R 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-E7-A5KF-01 20 33028019 33028019 C G ITCH Missense_Mutation p.L288V 0.11 tolerated(0.6) benign(0.005) TCGA-E7-A5KF-01 20 36634789 36634789 G A TTI1 Silent p.F771F 0.43 TCGA-E7-A5KF-01 20 44528142 44528142 C G PLTP Missense_Mutation p.E440Q 0.08 tolerated(0.09) probably_damaging(0.992) TCGA-E7-A5KF-01 20 44979130 44979130 C T SLC35C2 Missense_Mutation p.G334D 0.48 tolerated(0.21) benign(0) TCGA-E7-A5KF-01 20 8639294 8639294 G C PLCB1 Missense_Mutation p.E269Q 0.50 tolerated(0.06) possibly_damaging(0.542) TCGA-E7-A5KF-01 21 10910336 10910336 C T TPTE Missense_Mutation p.D474N 0.15 tolerated(0.19) possibly_damaging(0.457) TCGA-E7-A5KF-01 21 11049563 11049563 G C BAGE2 RNA 0.06 TCGA-E7-A5KF-01 21 46321536 46321536 G A ITGB2 Silent p.F204F 0.40 TCGA-E7-A5KF-01 22 19706011 19706011 G A SEPT5 Intron 0.46 TCGA-E7-A5KF-01 22 19706211 19706211 G C SEPT5 Intron 0.53 TCGA-E7-A5KF-01 22 21133729 21133729 G A SERPIND1 Silent p.E43E 0.44 TCGA-E7-A5KF-01 22 29886111 29886111 G A NEFH Missense_Mutation p.E828K 0.27 tolerated_low_confidence(0.12) unknown(0) TCGA-E7-A5KF-01 22 41833050 41833050 G A TOB2 Silent p.S100S 0.40 TCGA-E7-A5KF-01 22 45121154 45121154 C T PRR5 Silent p.F105F 0.39 TCGA-E7-A5KF-01 22 45132759 45132759 G C PRR5 Missense_Mutation p.E290Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-E7-A5KF-01 2 101627982 101627982 C T TBC1D8 Missense_Mutation p.D935N 0.15 deleterious(0.03) possibly_damaging(0.548) TCGA-E7-A5KF-01 2 105924672 105924672 G T TGFBRAP1 Nonsense_Mutation p.C29* 0.42 TCGA-E7-A5KF-01 2 128495456 128495456 G A WDR33 Intron 0.65 TCGA-E7-A5KF-01 2 130948175 130948175 G C MZT2B Missense_Mutation p.K151N 0.46 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-E7-A5KF-01 2 152107395 152107395 T C RBM43 3'UTR 0.48 TCGA-E7-A5KF-01 2 152226678 152226678 T A TNFAIP6 Missense_Mutation p.F180Y 0.42 deleterious(0) probably_damaging(0.992) TCGA-E7-A5KF-01 2 196619155 196619155 C G DNAH7 Missense_Mutation p.Q3890H 0.11 deleterious(0) probably_damaging(1) TCGA-E7-A5KF-01 2 20647365 20647365 G A RHOB Missense_Mutation p.E47K 0.49 tolerated(0.06) possibly_damaging(0.514) TCGA-E7-A5KF-01 2 206590756 206590756 G A NRP2 Missense_Mutation p.D314N 0.36 tolerated(0.62) benign(0.044) TCGA-E7-A5KF-01 2 220033800 220033800 C A SLC23A3 Missense_Mutation p.R156M 0.38 tolerated(0.11) possibly_damaging(0.637) TCGA-E7-A5KF-01 2 220044878 220044878 G A FAM134A Missense_Mutation p.E156K 0.39 deleterious(0.02) benign(0.262) TCGA-E7-A5KF-01 2 220073221 220073221 G A ZFAND2B Intron 0.47 TCGA-E7-A5KF-01 2 220497089 220497089 G A SLC4A3 Missense_Mutation p.E383K 0.51 tolerated(0.14) benign(0.027) TCGA-E7-A5KF-01 2 228162408 228162408 G A COL4A3 Missense_Mutation p.G1195E 0.20 unknown(0) TCGA-E7-A5KF-01 2 234255478 234255478 G C SAG Missense_Mutation p.E380Q 0.58 deleterious(0.01) benign(0.092) TCGA-E7-A5KF-01 2 234775808 234775808 C T MSL3P1 RNA 0.45 TCGA-E7-A5KF-01 2 241969806 241969806 G C SNED1 Missense_Mutation p.D107H 0.50 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KF-01 2 26739325 26739325 C A OTOF Missense_Mutation p.R157L 0.44 deleterious(0.05) benign(0.113) TCGA-E7-A5KF-01 2 27346903 27346903 G C ABHD1 Missense_Mutation p.L29F 0.48 deleterious(0.04) probably_damaging(0.935) TCGA-E7-A5KF-01 2 27591875 27591875 G A EIF2B4 Missense_Mutation p.S159L 0.17 tolerated(0.21) benign(0.012) TCGA-E7-A5KF-01 2 31754486 31754486 C A AL133247.2 Intron 0.13 TCGA-E7-A5KF-01 2 54080762 54080762 G A GPR75 Missense_Mutation p.R378W 0.44 deleterious(0) probably_damaging(0.999) TCGA-E7-A5KF-01 2 70904988 70904988 C T ADD2 Missense_Mutation p.E469K 0.58 tolerated(0.49) benign(0.114) TCGA-E7-A5KF-01 2 71891510 71891510 G C DYSF Missense_Mutation p.E1706Q 0.31 deleterious(0) probably_damaging(1) TCGA-E7-A5KF-01 2 73675857 73675857 C G ALMS1 Missense_Mutation p.Q734E 0.44 benign(0.429) TCGA-E7-A5KF-01 2 73676236 73676236 C G ALMS1 Missense_Mutation p.S860C 0.40 probably_damaging(0.936) TCGA-E7-A5KF-01 2 73717882 73717882 G C ALMS1 Missense_Mutation p.Q2931H 0.47 probably_damaging(0.932) TCGA-E7-A5KF-01 2 74329138 74329138 G A TET3 Silent p.G1606G 0.33 TCGA-E7-A5KF-01 2 97373548 97373548 C G LMAN2L Missense_Mutation p.L280F 0.44 tolerated(0.19) benign(0.149) TCGA-E7-A5KF-01 2 97403783 97403783 G A LMAN2L Missense_Mutation p.S70L 0.47 tolerated(0.08) possibly_damaging(0.471) TCGA-E7-A5KF-01 3 100274180 100274180 C A TMEM45A Missense_Mutation p.S42Y 0.44 deleterious(0) probably_damaging(0.935) TCGA-E7-A5KF-01 3 119132712 119132712 G A ARHGAP31 Missense_Mutation p.D646N 0.51 deleterious(0.05) probably_damaging(0.929) TCGA-E7-A5KF-01 3 119528935 119528935 G C NR1I2 Silent p.L114L 0.44 TCGA-E7-A5KF-01 3 119529019 119529019 G A NR1I2 Silent p.L142L 0.33 TCGA-E7-A5KF-01 3 120389340 120389340 G A HGD Silent p.P72P 0.42 TCGA-E7-A5KF-01 3 123021998 123021998 G A ADCY5 Silent p.V876V 0.49 TCGA-E7-A5KF-01 3 123036884 123036884 C T ADCY5 Silent p.Q779Q 0.49 TCGA-E7-A5KF-01 3 124174041 124174041 G A KALRN Silent p.V1188V 0.53 TCGA-E7-A5KF-01 3 124839545 124839545 G C SLC12A8 Intron 0.54 TCGA-E7-A5KF-01 3 167016198 167016198 G C ZBBX Missense_Mutation p.Q592E 0.50 deleterious(0) possibly_damaging(0.907) TCGA-E7-A5KF-01 3 172480532 172480532 A G ECT2 Missense_Mutation p.E314G 0.52 deleterious(0) benign(0.371) TCGA-E7-A5KF-01 3 184059921 184059922 - CTCATTG FAM131A Frame_Shift_Ins p.E134Afs*3 0.23 TCGA-E7-A5KF-01 3 184648312 184648312 G A VPS8 Missense_Mutation p.E952K 0.48 tolerated(0.28) benign(0.009) TCGA-E7-A5KF-01 3 184911022 184911022 C T EHHADH Silent p.L388L 0.46 TCGA-E7-A5KF-01 3 39184637 39184637 G C CSRNP1 Missense_Mutation p.S560C 0.13 deleterious(0) possibly_damaging(0.859) TCGA-E7-A5KF-01 3 43389638 43389638 C G SNRK Silent p.P629P 0.42 TCGA-E7-A5KF-01 3 49716301 49716301 C T APEH Silent p.I359I 0.39 TCGA-E7-A5KF-01 3 49753087 49753087 C T RNF123 Silent p.L1030L 0.53 TCGA-E7-A5KF-01 3 89259013 89259013 G A EPHA3 Missense_Mutation p.E53K 0.35 deleterious(0) probably_damaging(0.991) TCGA-E7-A5KF-01 4 100126096 100126096 C T ADH6 Missense_Mutation p.M363I 0.53 deleterious(0.02) benign(0.255) TCGA-E7-A5KF-01 4 123843692 123843692 C T NUDT6 Silent p.A12A 0.44 TCGA-E7-A5KF-01 4 140810589 140810589 C T MAML3 Silent p.Q667Q 0.48 TCGA-E7-A5KF-01 4 143181647 143181647 G C INPP4B Nonsense_Mutation p.S229* 0.13 TCGA-E7-A5KF-01 4 148550834 148550834 G A TMEM184C Missense_Mutation p.M219I 0.41 tolerated(0.99) benign(0.001) TCGA-E7-A5KF-01 4 17488744 17488744 G C QDPR 3'UTR 0.49 TCGA-E7-A5KF-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.47 deleterious(0) possibly_damaging(0.882) TCGA-E7-A5KF-01 4 184175148 184175148 G A WWC2 Missense_Mutation p.E398K 0.42 deleterious(0) benign(0.107) TCGA-E7-A5KF-01 4 2877807 2877807 G A ADD1 Silent p.K55K 0.54 TCGA-E7-A5KF-01 4 47605626 47605626 G A CORIN Missense_Mutation p.S867L 0.50 deleterious(0) possibly_damaging(0.595) TCGA-E7-A5KF-01 4 48578164 48578164 C A FRYL Silent p.L868L 0.44 TCGA-E7-A5KF-01 4 517379 517379 G A PIGG Silent p.V582V 0.48 TCGA-E7-A5KF-01 4 55133799 55133799 G C PDGFRA Missense_Mutation p.E338Q 0.53 tolerated(0.59) benign(0.143) TCGA-E7-A5KF-01 4 87671651 87671651 C T PTPN13 Silent p.L893L 0.42 TCGA-E7-A5KF-01 4 94693633 94693633 G A GRID2 Missense_Mutation p.R1003Q 0.50 tolerated_low_confidence(0.07) benign(0.087) TCGA-E7-A5KF-01 5 115249093 115249093 C T AP3S1 Missense_Mutation p.S163L 0.31 deleterious(0.01) possibly_damaging(0.461) TCGA-E7-A5KF-01 5 115327882 115327882 G C AQPEP Missense_Mutation p.D390H 0.44 tolerated(0.14) probably_damaging(0.985) TCGA-E7-A5KF-01 5 139494643 139494643 G A PURA Missense_Mutation p.E293K 0.38 tolerated_low_confidence(0.35) unknown(0) TCGA-E7-A5KF-01 5 139906634 139906634 G C ANKHD1 Missense_Mutation p.E1688Q 0.30 possibly_damaging(0.906) TCGA-E7-A5KF-01 5 140348667 140348667 C G PCDHAC2 Silent p.L772L 0.47 TCGA-E7-A5KF-01 5 140502820 140502820 G A PCDHB4 Missense_Mutation p.A414T 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.716) TCGA-E7-A5KF-01 5 140515287 140515287 G C PCDHB5 Missense_Mutation p.D91H 0.48 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-E7-A5KF-01 5 140516732 140516732 C A PCDHB5 Silent p.T572T 0.44 TCGA-E7-A5KF-01 5 140516903 140516903 G T PCDHB5 Silent p.L629L 0.43 TCGA-E7-A5KF-01 5 141694610 141694610 G C SPRY4 Missense_Mutation p.L45V 0.49 deleterious(0.03) probably_damaging(0.998) TCGA-E7-A5KF-01 5 149441379 149441379 C T CSF1R Missense_Mutation p.E554K 0.48 deleterious(0) possibly_damaging(0.541) TCGA-E7-A5KF-01 5 149466003 149466003 G A CSF1R 5'UTR 0.22 TCGA-E7-A5KF-01 5 170395314 170395314 C T RANBP17 Missense_Mutation p.A548V 0.20 deleterious(0) benign(0.318) TCGA-E7-A5KF-01 5 64267637 64267637 C T CWC27 Nonsense_Mutation p.Q384* 0.55 TCGA-E7-A5KF-01 5 65466696 65466696 G - SREK1 Frame_Shift_Del p.E469Kfs*47 0.47 TCGA-E7-A5KF-01 5 76722316 76722316 C T PDE8B Silent p.Y865Y 0.36 TCGA-E7-A5KF-01 6 111699001 111699001 G A REV3L Silent p.D500D 0.40 TCGA-E7-A5KF-01 6 145115049 145115049 G T UTRN Missense_Mutation p.Q3000H 0.48 deleterious(0) probably_damaging(0.988) TCGA-E7-A5KF-01 6 31655485 31655485 C T ABHD16A Missense_Mutation p.D494N 0.51 tolerated(0.11) benign(0.395) TCGA-E7-A5KF-01 6 33131390 33131390 G C COL11A2 3'UTR 0.53 TCGA-E7-A5KF-01 6 36651944 36651944 C - CDKN1A Frame_Shift_Del p.F22Lfs*9 0.34 TCGA-E7-A5KF-01 6 36930928 36930928 G T PI16 Silent p.T270T 0.50 TCGA-E7-A5KF-01 6 43266372 43266372 C T SLC22A7 Silent p.T92T 0.48 TCGA-E7-A5KF-01 6 71003884 71003884 G C COL9A1 Missense_Mutation p.Q228E 0.51 unknown(0) TCGA-E7-A5KF-01 6 83847489 83847489 G A DOPEY1 Missense_Mutation p.G1243E 0.48 tolerated_low_confidence(0.6) benign(0.002) TCGA-E7-A5KF-01 6 83848832 83848832 G C DOPEY1 Missense_Mutation p.D1691H 0.43 deleterious(0) probably_damaging(0.952) TCGA-E7-A5KF-01 6 87970330 87970331 - A ZNF292 Frame_Shift_Ins p.M2330Nfs*11 0.20 TCGA-E7-A5KF-01 7 143054508 143054508 C G FAM131B Missense_Mutation p.E159Q 0.14 tolerated(0.21) possibly_damaging(0.69) TCGA-E7-A5KF-01 7 151962236 151962236 G C KMT2C Missense_Mutation p.F357L 0.03 benign(0.02) TCGA-E7-A5KF-01 7 21775318 21775318 G C DNAH11 Missense_Mutation p.E2508Q 0.46 benign(0.081) TCGA-E7-A5KF-01 7 23221589 23221589 G C NUPL2 5'UTR 0.56 TCGA-E7-A5KF-01 7 48318187 48318187 C G ABCA13 Missense_Mutation p.L2466V 0.44 benign(0.209) TCGA-E7-A5KF-01 7 48634313 48634313 C T ABCA13 Missense_Mutation p.P4883L 0.42 probably_damaging(1) TCGA-E7-A5KF-01 7 54612434 54612434 C T VSTM2A Missense_Mutation p.R67W 0.08 deleterious(0.01) probably_damaging(0.971) TCGA-E7-A5KF-01 7 7546750 7546750 G A COL28A1 Nonsense_Mutation p.Q324* 0.38 TCGA-E7-A5KF-01 7 98988645 98988645 C T ARPC1B Silent p.F210F 0.36 TCGA-E7-A5KF-01 8 113988282 113988282 C T CSMD3 Missense_Mutation p.D376N 0.59 tolerated_low_confidence(0.08) benign(0.032) TCGA-E7-A5KF-01 8 133899166 133899166 G A TG Missense_Mutation p.D517N 0.44 tolerated(0.17) benign(0.007) TCGA-E7-A5KF-01 8 41906383 41906383 G A KAT6A Missense_Mutation p.S38L 0.50 benign(0.076) TCGA-E7-A5KF-01 8 52773484 52773484 C T PCMTD1 Silent p.L76L 0.37 TCGA-E7-A5KF-01 8 77776617 77776617 C T ZFHX4 Missense_Mutation p.S3556L 0.52 probably_damaging(0.974) TCGA-E7-A5KF-01 8 90965789 90965789 C G NBN Missense_Mutation p.E510Q 0.53 tolerated(1) benign(0.001) TCGA-E7-A5KF-01 9 15474228 15474228 C A PSIP1 Nonsense_Mutation p.E213* 0.98 TCGA-E7-A5KF-01 9 2834034 2834034 C T KIAA0020 Missense_Mutation p.R146K 1.00 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A5KF-01 9 33056197 33056197 G A SMU1 Missense_Mutation p.R346C 1.00 deleterious(0.03) benign(0.4) TCGA-E7-A5KF-01 9 37745615 37745615 C G FRMPD1 Missense_Mutation p.Q1196E 0.84 tolerated_low_confidence(0.24) benign(0.007) TCGA-E7-A5KF-01 9 74860132 74860132 C A GDA Missense_Mutation p.P402T 0.98 tolerated(0.75) benign(0.047) TCGA-E7-A5KF-01 X 103494920 103494920 G C ESX1 Missense_Mutation p.P404A 1.00 deleterious_low_confidence(0) unknown(0) TCGA-E7-A5KF-01 X 119387418 119387418 C T ZBTB33 Missense_Mutation p.L50F 0.98 deleterious(0) probably_damaging(1) TCGA-E7-A5KF-01 X 123171455 123171455 C T STAG2 Nonsense_Mutation p.Q123* 0.97 TCGA-E7-A5KF-01 X 147106444 147106444 A - FMR1NB Frame_Shift_Del p.R232Efs*73 0.48 TCGA-E7-A5KF-01 X 44913136 44913136 C T KDM6A Nonsense_Mutation p.Q271* 1.00 TCGA-E7-A5KF-01 X 54578063 54578063 C G GNL3L Missense_Mutation p.P309R 0.39 tolerated(0.65) probably_damaging(0.932) TCGA-E7-A5KF-01 X 69672576 69672576 C T DLG3 Intron 1.00 TCGA-E7-A5KF-01 X 73047437 73047437 G A XIST RNA 1.00 TCGA-E7-A5KF-01 X 91090515 91090515 G T PCDH11X Missense_Mutation p.L4F 0.98 tolerated(0.19) benign(0.082) TCGA-E7-A677-01 10 1118168 1118168 A G WDR37 Missense_Mutation p.I25V 0.45 tolerated(0.08) possibly_damaging(0.456) TCGA-E7-A677-01 10 115351978 115351978 C T NRAP Missense_Mutation p.R1540Q 0.36 deleterious(0.02) benign(0.148) TCGA-E7-A677-01 10 115970725 115970725 A G TDRD1 Silent p.S553S 0.40 TCGA-E7-A677-01 10 12940643 12940643 C T CCDC3 Missense_Mutation p.E196K 0.52 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-E7-A677-01 10 15008583 15008583 G A MEIG1 Missense_Mutation p.R39K 0.43 tolerated(1) benign(0.001) TCGA-E7-A677-01 10 23481532 23481532 G T PTF1A Missense_Mutation p.D25Y 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-E7-A677-01 10 26492010 26492010 G T MYO3A Missense_Mutation p.Q1568H 0.43 deleterious_low_confidence(0.03) benign(0.429) TCGA-E7-A677-01 10 27350131 27350131 G A ANKRD26 Silent p.N468N 0.29 TCGA-E7-A677-01 10 33134528 33134528 C A C10ORF68 Missense_Mutation p.T408N 0.43 tolerated(0.15) benign(0.092) TCGA-E7-A677-01 10 33134529 33134529 C A C10ORF68 Silent p.T408T 0.43 TCGA-E7-A677-01 10 43088239 43088239 G C ZNF33B Missense_Mutation p.S720C 0.42 deleterious(0) possibly_damaging(0.717) TCGA-E7-A677-01 10 61552398 61552398 A C CCDC6 3'UTR 0.47 TCGA-E7-A677-01 10 75012281 75012281 C G MRPS16 5'UTR 0.39 TCGA-E7-A677-01 10 78799306 78799306 C G KCNMA1 Silent p.L613L 0.33 TCGA-E7-A677-01 10 99344623 99344623 G T PI4K2A Missense_Mutation p.G55W 0.40 deleterious_low_confidence(0) benign(0.063) TCGA-E7-A677-01 11 113194054 113194054 C T TTC12 Nonsense_Mutation p.Q35* 0.15 TCGA-E7-A677-01 11 118772659 118772659 A C BCL9L Missense_Mutation p.F598C 0.39 probably_damaging(0.974) TCGA-E7-A677-01 11 130106904 130106904 C G ZBTB44 Splice_Site p.X451_splice 0.53 TCGA-E7-A677-01 11 134076622 134076622 G A NCAPD3 Silent p.I296I 0.49 TCGA-E7-A677-01 11 16071351 16071351 C A SOX6 Missense_Mutation p.S462I 0.15 tolerated(0.13) possibly_damaging(0.828) TCGA-E7-A677-01 11 17418789 17418789 G T ABCC8 Silent p.R1313R 0.36 TCGA-E7-A677-01 11 36250737 36250737 G A LDLRAD3 Silent p.P276P 0.48 TCGA-E7-A677-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.51 deleterious(0.02) benign(0.046) TCGA-E7-A677-01 11 5632635 5632635 C T TRIM6 3'UTR 0.39 TCGA-E7-A677-01 11 61732222 61732222 C A FTH1 Nonsense_Mutation p.G177* 0.06 TCGA-E7-A677-01 11 61732243 61732243 G A FTH1 Missense_Mutation p.L170F 0.07 tolerated(0.05) benign(0.061) TCGA-E7-A677-01 11 6340378 6340378 A G PRKCDBP 3'UTR 0.38 TCGA-E7-A677-01 11 640677 640677 G C DRD4 3'UTR 0.36 TCGA-E7-A677-01 11 64950403 64950403 C A CAPN1 Silent p.S77S 0.38 TCGA-E7-A677-01 11 65266361 65266361 A G MALAT1 RNA 0.46 TCGA-E7-A677-01 11 75319175 75319175 T C MAP6 Silent p.E366E 0.14 TCGA-E7-A677-01 11 76709821 76709821 G C ACER3 Missense_Mutation p.M151I 0.29 tolerated(0.76) benign(0.007) TCGA-E7-A677-01 11 76814244 76814244 C T OMP Missense_Mutation p.A120V 0.52 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-E7-A677-01 11 77412850 77412850 G A RSF1 Missense_Mutation p.S475F 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.534) TCGA-E7-A677-01 11 78369111 78369111 G A TENM4 Missense_Mutation p.R2768W 0.39 deleterious(0) probably_damaging(0.995) TCGA-E7-A677-01 12 10588574 10588574 T G KLRC2 Missense_Mutation p.Q4H 0.06 tolerated(0.06) possibly_damaging(0.57) TCGA-E7-A677-01 12 109684225 109684225 C T ACACB Missense_Mutation p.A1848V 0.09 deleterious(0) probably_damaging(0.997) TCGA-E7-A677-01 12 110399142 110399142 C T GIT2 Missense_Mutation p.E310K 0.44 deleterious(0) possibly_damaging(0.608) TCGA-E7-A677-01 12 112590672 112590672 T G TRAFD1 3'UTR 0.09 TCGA-E7-A677-01 12 122492803 122492803 C G BCL7A Missense_Mutation p.L178V 0.15 tolerated_low_confidence(0.23) benign(0.03) TCGA-E7-A677-01 12 124819826 124819826 C T NCOR2 Missense_Mutation p.G2089D 0.38 possibly_damaging(0.601) TCGA-E7-A677-01 12 132547111 132547111 G A EP400 Silent p.Q2733Q 0.16 TCGA-E7-A677-01 12 132547114 132547114 G A EP400 Silent p.Q2734Q 0.20 TCGA-E7-A677-01 12 132547117 132547117 G A EP400 Silent p.Q2735Q 0.14 TCGA-E7-A677-01 12 49364022 49364022 G A WNT10B Silent p.L63L 0.16 TCGA-E7-A677-01 12 49723220 49723220 G C TROAP Missense_Mutation p.D383H 0.26 deleterious(0) possibly_damaging(0.807) TCGA-E7-A677-01 12 50152506 50152506 C A TMBIM6 Silent p.S216S 0.39 TCGA-E7-A677-01 12 54333305 54333305 C G HOXC13 Missense_Mutation p.H205Q 0.31 deleterious(0) probably_damaging(0.937) TCGA-E7-A677-01 12 56385220 56385220 A T RAB5B Missense_Mutation p.D172V 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-E7-A677-01 12 57496234 57496236 TCT - STAT6 In_Frame_Del p.K450del 0.36 TCGA-E7-A677-01 12 57868471 57868471 C T ARHGAP9 Missense_Mutation p.G556D 0.35 deleterious(0) probably_damaging(1) TCGA-E7-A677-01 12 57928078 57928078 G A DCTN2 Missense_Mutation p.A179V 0.43 tolerated(0.15) possibly_damaging(0.857) TCGA-E7-A677-01 12 6483632 6483632 G A SCNN1A Silent p.F165F 0.43 TCGA-E7-A677-01 12 72771813 72771814 - TCCGGGGAC TRHDE In_Frame_Ins p.S365_D367dup 0.35 TCGA-E7-A677-01 13 101077951 101077951 C G PCCA Missense_Mutation p.S604C 0.47 deleterious(0.03) benign(0.246) TCGA-E7-A677-01 13 24167527 24167527 A G TNFRSF19 Missense_Mutation p.E38G 0.05 deleterious(0) probably_damaging(0.983) TCGA-E7-A677-01 13 39432016 39432017 - GA FREM2 Frame_Shift_Ins p.K2355Rfs*7 0.31 TCGA-E7-A677-01 13 51826227 51826227 C T FAM124A Nonsense_Mutation p.R278* 0.19 TCGA-E7-A677-01 13 52524492 52524492 C T ATP7B Missense_Mutation p.V831I 0.16 tolerated(1) benign(0.012) TCGA-E7-A677-01 13 60485871 60485871 C T DIAPH3 Missense_Mutation p.V789M 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-E7-A677-01 13 95254270 95254270 G A GPR180 Missense_Mutation p.S30N 0.54 tolerated(0.46) benign(0.001) TCGA-E7-A677-01 14 24045150 24045150 G C JPH4 Missense_Mutation p.R299G 0.55 deleterious(0) probably_damaging(0.993) TCGA-E7-A677-01 14 32561088 32561091 CTGA - ARHGAP5 Frame_Shift_Del p.L405Afs*3 0.37 TCGA-E7-A677-01 14 35777221 35777221 A G PSMA6 Missense_Mutation p.N33S 0.41 tolerated(0.45) benign(0.007) TCGA-E7-A677-01 14 38061341 38061351 GTTCTGCCAGC - FOXA1 Frame_Shift_Del p.R213Lfs*10 0.47 TCGA-E7-A677-01 14 69257050 69257050 C T ZFP36L1 Missense_Mutation p.G73S 0.43 tolerated(0.69) benign(0.001) TCGA-E7-A677-01 14 69522027 69522030 GAGT C DCAF5 In_Frame_Del p.D458_S459delinsG 0.46 TCGA-E7-A677-01 14 74179522 74179522 T C PNMA1 Missense_Mutation p.K274R 0.43 tolerated(0.21) benign(0.251) TCGA-E7-A677-01 14 75471447 75471447 A C EIF2B2 Silent p.T147T 0.45 TCGA-E7-A677-01 14 77708767 77708767 A G TMEM63C Missense_Mutation p.Y381C 0.43 tolerated(0.18) possibly_damaging(0.886) TCGA-E7-A677-01 14 77950716 77950716 G A ISM2 Silent p.L193L 0.41 TCGA-E7-A677-01 15 23890121 23890121 C G MAGEL2 Missense_Mutation p.E320D 0.08 tolerated(0.08) benign(0.017) TCGA-E7-A677-01 15 41165166 41165166 C T RHOV 3'UTR 0.48 TCGA-E7-A677-01 15 49170942 49170942 A G EID1 3'UTR 0.50 TCGA-E7-A677-01 15 73616457 73616457 C G HCN4 Missense_Mutation p.V706L 0.04 deleterious(0) unknown(0) TCGA-E7-A677-01 15 76225492 76225492 C T FBXO22 3'UTR 0.53 TCGA-E7-A677-01 15 77345242 77345242 T G TSPAN3 Silent p.S154S 0.38 TCGA-E7-A677-01 15 79092781 79092781 C T ADAMTS7 Missense_Mutation p.R70Q 0.34 tolerated(0.09) possibly_damaging(0.595) TCGA-E7-A677-01 15 83932686 83932686 C T BNC1 Silent p.K439K 0.42 TCGA-E7-A677-01 15 85478266 85478266 G A SLC28A1 Silent p.Q408Q 0.34 TCGA-E7-A677-01 15 90378641 90378641 G A C15orf38-AP3S2 3'UTR 0.40 TCGA-E7-A677-01 15 99926350 99926350 G T LRRC28 3'UTR 0.48 TCGA-E7-A677-01 16 14960520 14960520 G C NOMO1 Missense_Mutation p.R593T 0.10 deleterious(0.04) possibly_damaging(0.476) TCGA-E7-A677-01 16 15026489 15026489 C - NPIPA1 5'Flank 0.13 TCGA-E7-A677-01 16 2014478 2014478 G A RPS2 Missense_Mutation p.A50V 0.14 tolerated(0.11) unknown(0) TCGA-E7-A677-01 16 2203433 2203439 GCTCAGT - RAB26 3'UTR 0.29 TCGA-E7-A677-01 16 23724653 23724653 C A ERN2 5'UTR 0.53 TCGA-E7-A677-01 16 27374810 27374810 T C IL4R Missense_Mutation p.Y713H 0.37 deleterious(0) probably_damaging(0.999) TCGA-E7-A677-01 16 29855935 29855935 G T MVP Missense_Mutation p.V586F 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-E7-A677-01 16 30768824 30768824 C T C16orf93 Silent p.P323P 0.38 TCGA-E7-A677-01 16 4714751 4714751 C T MGRN1 Silent p.I201I 0.43 TCGA-E7-A677-01 16 4924782 4924782 C T UBN1 Missense_Mutation p.H791Y 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.542) TCGA-E7-A677-01 16 57115511 57115511 C T NLRC5 Silent p.I1826I 0.33 TCGA-E7-A677-01 16 58031777 58031777 G A ZNF319 Silent p.P131P 0.07 TCGA-E7-A677-01 16 67701899 67701899 A G C16orf86 Missense_Mutation p.K151E 0.36 deleterious(0) possibly_damaging(0.486) TCGA-E7-A677-01 16 68267928 68267928 C T ESRP2 Missense_Mutation p.R137Q 0.35 deleterious(0) probably_damaging(0.983) TCGA-E7-A677-01 16 74729419 74729419 G A MLKL Silent p.F79F 0.43 TCGA-E7-A677-01 16 74955920 74955920 A G WDR59 Silent p.L271L 0.26 TCGA-E7-A677-01 16 75690477 75690477 G T TERF2IP Missense_Mutation p.V390L 0.45 tolerated(0.11) possibly_damaging(0.539) TCGA-E7-A677-01 16 79632824 79632824 G A MAF Nonsense_Mutation p.Q326* 0.47 TCGA-E7-A677-01 16 83842915 83842915 G C HSBP1 Missense_Mutation p.D40H 0.40 deleterious(0) possibly_damaging(0.823) TCGA-E7-A677-01 17 10440677 10440677 G T MYH2 Missense_Mutation p.D590E 0.77 tolerated(0.06) benign(0.407) TCGA-E7-A677-01 17 10440679 10440679 C A MYH2 Missense_Mutation p.D590Y 0.78 deleterious(0.01) probably_damaging(0.985) TCGA-E7-A677-01 17 18088106 18088106 C T ALKBH5 Silent p.P183P 0.81 TCGA-E7-A677-01 17 29182252 29182252 C T ATAD5 Missense_Mutation p.R848W 0.40 deleterious(0) probably_damaging(0.999) TCGA-E7-A677-01 17 34264791 34264791 G C LYZL6 Missense_Mutation p.S90W 0.31 deleterious(0) probably_damaging(0.999) TCGA-E7-A677-01 17 40321564 40321564 C A KCNH4 Silent p.P507P 0.59 TCGA-E7-A677-01 17 44618223 44618223 T G LRRC37A2 Missense_Mutation p.M1010R 0.37 tolerated(0.06) benign(0.045) TCGA-E7-A677-01 17 4637924 4637924 C A CXCL16 Missense_Mutation p.V267L 0.74 tolerated(0.06) possibly_damaging(0.621) TCGA-E7-A677-01 17 46673862 46673862 G A HOXB6 Silent p.N196N 0.04 TCGA-E7-A677-01 17 48557062 48557062 G A RSAD1 Missense_Mutation p.A70T 0.87 tolerated(0.36) benign(0.033) TCGA-E7-A677-01 17 67109434 67109434 A G ABCA6 Missense_Mutation p.L657P 0.81 deleterious(0) probably_damaging(0.967) TCGA-E7-A677-01 17 73316548 73316548 G A GRB2 Silent p.V185V 0.06 TCGA-E7-A677-01 17 7748752 7748752 C T KDM6B 5'UTR 0.80 TCGA-E7-A677-01 17 78865582 78865582 C A RPTOR Silent p.A682A 0.04 TCGA-E7-A677-01 17 79478258 79478258 T A ACTG1 Missense_Mutation p.E253V 0.05 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-E7-A677-01 17 80790240 80790240 G A ZNF750 Missense_Mutation p.P31S 0.88 deleterious(0) probably_damaging(0.999) TCGA-E7-A677-01 17 9460777 9460777 C A STX8 Missense_Mutation p.L62F 0.78 deleterious(0.01) probably_damaging(0.969) TCGA-E7-A677-01 18 31803132 31803132 G A NOL4 Missense_Mutation p.T29I 0.34 deleterious(0) probably_damaging(0.996) TCGA-E7-A677-01 19 13059625 13059625 A G RAD23A Missense_Mutation p.T200A 0.45 deleterious(0.01) benign(0.007) TCGA-E7-A677-01 19 17729718 17729718 G A UNC13A Silent p.L1442L 0.36 TCGA-E7-A677-01 19 1990099 1990099 G A BTBD2 Nonsense_Mutation p.Q298* 0.32 TCGA-E7-A677-01 19 40739846 40739846 C T AKT2 Missense_Mutation p.G460D 0.41 tolerated(0.48) benign(0.004) TCGA-E7-A677-01 19 40909702 40909702 A G PRX Missense_Mutation p.I32T 0.17 deleterious(0) benign(0.291) TCGA-E7-A677-01 19 41224075 41224075 A T ITPKC Silent p.G345G 0.44 TCGA-E7-A677-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.34 deleterious(0) probably_damaging(0.979) TCGA-E7-A677-01 19 45975945 45975945 G A FOSB Missense_Mutation p.G231E 0.38 tolerated(1) probably_damaging(0.986) TCGA-E7-A677-01 19 48837376 48837376 C G TMEM143 Missense_Mutation p.E352Q 0.46 tolerated(0.1) probably_damaging(0.982) TCGA-E7-A677-01 19 50550254 50550254 C T ZNF473 Missense_Mutation p.R852W 0.41 tolerated(0.06) benign(0.298) TCGA-E7-A677-01 19 51853643 51853643 G A ETFB Silent p.A217A 0.36 TCGA-E7-A677-01 19 52272071 52272071 C T FPR2 Missense_Mutation p.R54W 0.15 deleterious(0) possibly_damaging(0.528) TCGA-E7-A677-01 19 52537442 52537442 T C ZNF432 Missense_Mutation p.N497S 0.10 deleterious(0.01) possibly_damaging(0.725) TCGA-E7-A677-01 19 53669550 53669550 T G ZNF665 Missense_Mutation p.N65H 0.43 deleterious(0.02) possibly_damaging(0.652) TCGA-E7-A677-01 19 53995109 53995109 T A ZNF813 Missense_Mutation p.H541Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-E7-A677-01 19 55087354 55087354 C A LILRA2 Missense_Mutation p.Q345K 0.46 deleterious(0.03) possibly_damaging(0.714) TCGA-E7-A677-01 19 55753534 55753534 C T PPP6R1 Missense_Mutation p.R282K 0.45 tolerated(0.97) probably_damaging(0.927) TCGA-E7-A677-01 19 55857972 55857972 G C SUV420H2 Missense_Mutation p.G271A 0.36 deleterious(0.05) benign(0.009) TCGA-E7-A677-01 19 56736163 56736163 C T ZSCAN5A Missense_Mutation p.D85N 0.32 deleterious(0.01) probably_damaging(1) TCGA-E7-A677-01 19 58384047 58384048 CT - ZNF814 3'UTR 0.35 TCGA-E7-A677-01 1 103405960 103405960 T C COL11A1 Missense_Mutation p.R1103G 0.06 unknown(0) TCGA-E7-A677-01 1 107600179 107600179 G A PRMT6 Missense_Mutation p.G281D 0.38 deleterious(0.02) probably_damaging(0.979) TCGA-E7-A677-01 1 110169352 110169352 C A AMPD2 Missense_Mutation p.P233Q 0.43 deleterious(0) probably_damaging(1) TCGA-E7-A677-01 1 111957657 111957657 G A OVGP1 Missense_Mutation p.P489L 0.46 tolerated_low_confidence(0.09) benign(0.059) TCGA-E7-A677-01 1 117556216 117556216 A G CD101 Missense_Mutation p.R344G 0.44 deleterious(0) probably_damaging(0.993) TCGA-E7-A677-01 1 12921375 12921375 T C PRAMEF2 Missense_Mutation p.M389T 0.17 tolerated(0.29) benign(0.05) TCGA-E7-A677-01 1 145608502 145608502 G A POLR3C Missense_Mutation p.T102I 0.48 tolerated(0.35) benign(0.023) TCGA-E7-A677-01 1 146658822 146658822 T C FMO5 Missense_Mutation p.Y420C 0.51 deleterious(0.01) probably_damaging(0.991) TCGA-E7-A677-01 1 150444715 150444715 G A RPRD2 Silent p.R1097R 0.40 TCGA-E7-A677-01 1 151497239 151497239 G A CGN Silent p.L497L 0.27 TCGA-E7-A677-01 1 152276932 152276932 C T FLG Missense_Mutation p.R3477H 0.24 unknown(0) TCGA-E7-A677-01 1 154310140 154310140 T G ATP8B2 Intron 0.37 TCGA-E7-A677-01 1 154471628 154471628 G A SHE Silent p.D226D 0.13 TCGA-E7-A677-01 1 155220929 155220929 G C FAM189B Missense_Mutation p.H307Q 0.42 tolerated(0.19) probably_damaging(0.977) TCGA-E7-A677-01 1 155269945 155269945 A G PKLR Missense_Mutation p.L76P 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A677-01 1 16373136 16373136 G A CLCNKB Silent p.Q112Q 0.52 TCGA-E7-A677-01 1 1638914 1638914 G A CDK11A Silent p.P393P 0.45 TCGA-E7-A677-01 1 167742493 167742493 G A MPZL1 Missense_Mutation p.V165I 0.38 tolerated(0.65) benign(0.017) TCGA-E7-A677-01 1 17596741 17596741 G A PADI3 Silent p.V222V 0.21 TCGA-E7-A677-01 1 177198999 177198999 C T BRINP2 5'UTR 0.16 TCGA-E7-A677-01 1 186330825 186330825 G A TPR Missense_Mutation p.S296L 0.42 benign(0.307) TCGA-E7-A677-01 1 203667353 203667353 A G ATP2B4 Missense_Mutation p.K88E 0.42 tolerated(0.1) probably_damaging(0.998) TCGA-E7-A677-01 1 206225152 206225152 C T AVPR1B Missense_Mutation p.R238W 0.08 deleterious(0) possibly_damaging(0.72) TCGA-E7-A677-01 1 207782886 207782886 A G CR1 Missense_Mutation p.I2050V 0.56 tolerated(0.33) possibly_damaging(0.789) TCGA-E7-A677-01 1 212141254 212141254 C T INTS7 Missense_Mutation p.D694N 0.36 deleterious(0) probably_damaging(0.998) TCGA-E7-A677-01 1 220363468 220363468 G A RAB3GAP2 Missense_Mutation p.A551V 0.38 deleterious(0) probably_damaging(0.924) TCGA-E7-A677-01 1 22408257 22408257 C - CDC42 Frame_Shift_Del p.P50Hfs*21 0.29 TCGA-E7-A677-01 1 235971786 235971786 C A LYST Missense_Mutation p.V778L 0.28 tolerated(1) benign(0) TCGA-E7-A677-01 1 242428744 242428744 G A PLD5 Missense_Mutation p.R168C 0.41 deleterious(0.04) possibly_damaging(0.613) TCGA-E7-A677-01 1 24706212 24706212 G T STPG1 Silent p.S131S 0.38 TCGA-E7-A677-01 1 27683576 27683576 G A MAP3K6 Silent p.I1096I 0.42 TCGA-E7-A677-01 1 35223718 35223718 C G GJB5 Missense_Mutation p.R263G 0.42 tolerated(0.43) benign(0) TCGA-E7-A677-01 1 39877424 39877424 C T KIAA0754 Missense_Mutation p.A360V 0.42 benign(0.005) TCGA-E7-A677-01 1 40041436 40041436 G C PABPC4 Missense_Mutation p.A63G 0.49 deleterious(0.02) benign(0.293) TCGA-E7-A677-01 1 40735778 40735778 G A ZMPSTE24 Silent p.L202L 0.33 TCGA-E7-A677-01 1 52442749 52442749 G A RAB3B Missense_Mutation p.A14V 0.39 deleterious(0.02) benign(0.043) TCGA-E7-A677-01 1 55557787 55557787 G T USP24 Missense_Mutation p.H2155N 0.37 tolerated(0.28) benign(0.093) TCGA-E7-A677-01 1 59148161 59148161 T G MYSM1 Missense_Mutation p.Q185H 0.41 tolerated(0.07) benign(0.006) TCGA-E7-A677-01 1 70904465 70904465 G C CTH Missense_Mutation p.E383Q 0.40 tolerated(0.58) benign(0.012) TCGA-E7-A677-01 1 8601299 8601299 G A RERE Silent p.Y268Y 0.49 TCGA-E7-A677-01 20 34204152 34204152 C A SPAG4 Missense_Mutation p.S76Y 0.46 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-E7-A677-01 20 37163777 37163777 G A RALGAPB Missense_Mutation p.R769K 0.47 deleterious(0.03) benign(0.084) TCGA-E7-A677-01 20 44049174 44049174 G A PIGT Missense_Mutation p.E292K 0.45 tolerated(0.54) benign(0.036) TCGA-E7-A677-01 20 5170462 5170462 G A CDS2 Missense_Mutation p.V395I 0.13 deleterious(0) possibly_damaging(0.856) TCGA-E7-A677-01 20 9495416 9495416 C T LAMP5 5'UTR 0.25 TCGA-E7-A677-01 21 30257670 30257670 T C N6AMT1 5'UTR 0.48 TCGA-E7-A677-01 21 34142132 34142132 T G PAXBP1 Silent p.S155S 0.33 TCGA-E7-A677-01 21 46321518 46321518 C T ITGB2 Silent p.L210L 0.34 TCGA-E7-A677-01 22 22892145 22892145 C A PRAME Intron 0.08 TCGA-E7-A677-01 22 29454979 29454979 G T C22orf31 Silent p.L208L 0.37 TCGA-E7-A677-01 22 39267529 39267529 C G CBX6 Missense_Mutation p.G68R 0.37 deleterious(0) probably_damaging(0.99) TCGA-E7-A677-01 22 45748428 45748428 T C SMC1B Missense_Mutation p.N1110D 0.51 deleterious(0.01) probably_damaging(0.948) TCGA-E7-A677-01 2 157406197 157406197 A G GPD2 Missense_Mutation p.M247V 0.41 tolerated(1) benign(0.001) TCGA-E7-A677-01 2 160998560 160998561 - CAGGAA ITGB6 In_Frame_Ins p.P346_G347insVP 0.32 TCGA-E7-A677-01 2 162273454 162273454 A G TBR1 Missense_Mutation p.Q178R 0.34 tolerated(0.15) possibly_damaging(0.775) TCGA-E7-A677-01 2 162273470 162273470 C T TBR1 Silent p.S183S 0.35 TCGA-E7-A677-01 2 162870960 162870960 A T DPP4 Missense_Mutation p.M528K 0.56 deleterious(0) probably_damaging(0.986) TCGA-E7-A677-01 2 179425870 179425870 C T TTN Missense_Mutation p.R28330K 0.44 TCGA-E7-A677-01 2 183943598 183943598 C G DUSP19 5'UTR 0.19 TCGA-E7-A677-01 2 199011631 199011631 G A PLCL1 Missense_Mutation p.R1078H 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-E7-A677-01 2 216256457 216256457 T C FN1 Missense_Mutation p.I1384V 0.37 tolerated(0.24) benign(0.174) TCGA-E7-A677-01 2 25174414 25174414 T C DNAJC27 Missense_Mutation p.I180V 0.40 tolerated(0.29) benign(0) TCGA-E7-A677-01 2 25458672 25458672 G T DNMT3A Missense_Mutation p.T834N 0.41 deleterious(0) probably_damaging(0.997) TCGA-E7-A677-01 2 42284784 42284784 G T PKDCC Missense_Mutation p.V480F 0.57 deleterious(0) possibly_damaging(0.635) TCGA-E7-A677-01 2 54158975 54158975 T C PSME4 Missense_Mutation p.E438G 0.36 deleterious(0) probably_damaging(0.98) TCGA-E7-A677-01 2 55646254 55646254 A G CCDC88A 5'UTR 0.23 TCGA-E7-A677-01 2 69870188 69870188 C T AAK1 5'UTR 0.70 TCGA-E7-A677-01 2 79364437 79364437 G A REG1P RNA 0.12 TCGA-E7-A677-01 2 96690305 96690305 C T GPAT2 Silent p.R513R 0.41 TCGA-E7-A677-01 3 121527763 121527763 C T IQCB1 Missense_Mutation p.V163I 0.38 deleterious(0.02) possibly_damaging(0.612) TCGA-E7-A677-01 3 136192388 136192388 C G STAG1 Missense_Mutation p.R373P 0.18 deleterious(0) probably_damaging(0.989) TCGA-E7-A677-01 3 138248105 138248105 A C CEP70 Missense_Mutation p.S269A 0.50 tolerated(0.18) benign(0.014) TCGA-E7-A677-01 3 141163575 141163575 C G ZBTB38 Nonsense_Mutation p.S782* 0.35 TCGA-E7-A677-01 3 142430803 142430803 C T PLS1 Missense_Mutation p.T615M 0.42 deleterious(0.02) probably_damaging(0.989) TCGA-E7-A677-01 3 151101649 151101649 C T MED12L Missense_Mutation p.S1553L 0.50 deleterious(0.03) possibly_damaging(0.788) TCGA-E7-A677-01 3 152058460 152058460 C T TMEM14E Silent p.A78A 0.06 TCGA-E7-A677-01 3 158390310 158390310 A C LXN 5'UTR 0.06 TCGA-E7-A677-01 3 184025724 184025724 A G PSMD2 Missense_Mutation p.H782R 0.11 deleterious(0) possibly_damaging(0.743) TCGA-E7-A677-01 3 194162174 194162174 C T ATP13A3 Missense_Mutation p.E526K 0.44 tolerated(0.61) benign(0.008) TCGA-E7-A677-01 3 3192484 3192484 A G CRBN 3'UTR 0.33 TCGA-E7-A677-01 3 38347576 38347576 T C SLC22A14 Missense_Mutation p.L20S 0.49 tolerated(0.57) benign(0.018) TCGA-E7-A677-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.44 deleterious(0) possibly_damaging(0.844) TCGA-E7-A677-01 3 44986696 44986696 C T ZDHHC3 Missense_Mutation p.C132Y 0.43 deleterious(0) benign(0.072) TCGA-E7-A677-01 3 47448043 47448054 CAGAAGGACTGG - PTPN23 In_Frame_Del p.Q234_W237del 0.42 TCGA-E7-A677-01 3 49081924 49081924 T C QRICH1 Missense_Mutation p.N562S 0.49 tolerated(0.05) probably_damaging(0.971) TCGA-E7-A677-01 3 49152995 49152995 T G USP19 Missense_Mutation p.E588D 0.49 tolerated(0.09) probably_damaging(0.999) TCGA-E7-A677-01 3 50289836 50289836 C G GNAI2 Missense_Mutation p.H57D 0.38 deleterious(0) possibly_damaging(0.517) TCGA-E7-A677-01 3 51981796 51981796 G A PARP3 Missense_Mutation p.M446I 0.37 deleterious(0) benign(0.433) TCGA-E7-A677-01 3 53531256 53531256 A G CACNA1D Missense_Mutation p.T49A 0.48 tolerated_low_confidence(0.48) benign(0.015) TCGA-E7-A677-01 3 56785360 56785360 C A ARHGEF3 Missense_Mutation p.G200V 0.35 deleterious(0) probably_damaging(1) TCGA-E7-A677-01 3 97655727 97655727 T C CRYBG3 Missense_Mutation p.I879T 0.38 deleterious(0) possibly_damaging(0.825) TCGA-E7-A677-01 4 100048405 100048405 C T ADH4 Missense_Mutation p.E312K 0.14 tolerated(0.07) benign(0.004) TCGA-E7-A677-01 4 123122274 123122274 C T KIAA1109 Silent p.F497F 0.27 TCGA-E7-A677-01 4 128870988 128870988 T A MFSD8 Missense_Mutation p.M57L 0.36 tolerated(0.4) benign(0.001) TCGA-E7-A677-01 4 146653702 146653702 C G C4orf51 Missense_Mutation p.P200R 0.26 tolerated_low_confidence(0.23) benign(0.18) TCGA-E7-A677-01 4 164272307 164272307 A G NPY5R Silent p.A294A 0.39 TCGA-E7-A677-01 4 169393865 169393865 G A DDX60L 5'UTR 0.31 TCGA-E7-A677-01 4 170912534 170912534 C A MFAP3L Missense_Mutation p.V409F 0.35 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-E7-A677-01 4 183714137 183714137 T G TENM3 Missense_Mutation p.I2104M 0.34 deleterious(0) possibly_damaging(0.703) TCGA-E7-A677-01 4 186066147 186066147 C T SLC25A4 Missense_Mutation p.A114V 0.48 tolerated(0.11) benign(0.004) TCGA-E7-A677-01 4 186423430 186423430 T C PDLIM3 3'UTR 0.41 TCGA-E7-A677-01 4 186583280 186583280 G C SORBS2 Silent p.V124V 0.11 TCGA-E7-A677-01 4 26585768 26585768 C T TBC1D19 5'UTR 0.55 TCGA-E7-A677-01 4 2877725 2877725 T C ADD1 Missense_Mutation p.V28A 0.37 tolerated(0.06) possibly_damaging(0.686) TCGA-E7-A677-01 4 42025319 42025319 A G SLC30A9 Silent p.K176K 0.17 TCGA-E7-A677-01 4 52861766 52861766 A G LRRC66 Silent p.T474T 0.47 TCGA-E7-A677-01 4 83795831 83795831 C T SEC31A Missense_Mutation p.G191D 0.35 deleterious(0) probably_damaging(0.997) TCGA-E7-A677-01 4 88258408 88258408 G T HSD17B11 3'UTR 0.41 TCGA-E7-A677-01 4 89618871 89618871 G A NAP1L5 Missense_Mutation p.P12L 0.48 deleterious_low_confidence(0) unknown(0) TCGA-E7-A677-01 4 95174132 95174132 C T SMARCAD1 Missense_Mutation p.R419W 0.05 deleterious(0) probably_damaging(1) TCGA-E7-A677-01 5 131662989 131662989 C T SLC22A4 Nonsense_Mutation p.R282* 0.32 TCGA-E7-A677-01 5 131877406 131877406 T C IL5 3'UTR 0.38 TCGA-E7-A677-01 5 134296379 134296379 C G PCBD2 3'UTR 0.42 TCGA-E7-A677-01 5 140574332 140574332 G T PCDHB10 Missense_Mutation p.G736V 0.32 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-E7-A677-01 5 140581569 140581569 G A PCDHB11 Missense_Mutation p.G741D 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-E7-A677-01 5 150867635 150867635 G A SLC36A1 Silent p.P417P 0.45 TCGA-E7-A677-01 5 153433323 153433323 A G MFAP3 3'UTR 0.16 TCGA-E7-A677-01 5 169673129 169673129 T G C5orf58 3'UTR 0.48 TCGA-E7-A677-01 5 176011257 176011257 C T CDHR2 Missense_Mutation p.P709S 0.43 tolerated(0.24) benign(0.034) TCGA-E7-A677-01 5 179155596 179155596 A G CANX Missense_Mutation p.D577G 0.32 deleterious(0.04) possibly_damaging(0.505) TCGA-E7-A677-01 5 180057238 180057238 A T FLT4 Missense_Mutation p.V167D 0.40 deleterious(0) probably_damaging(0.921) TCGA-E7-A677-01 5 24537646 24537646 G C CDH10 Silent p.A123A 0.41 TCGA-E7-A677-01 5 55147449 55147455 TCCGCAA - IL31RA Frame_Shift_Del p.C17* 0.27 TCGA-E7-A677-01 5 73136467 73136467 G T ARHGEF28 Missense_Mutation p.A437S 0.40 tolerated(0.76) benign(0.006) TCGA-E7-A677-01 5 73136468 73136468 C T ARHGEF28 Missense_Mutation p.A437V 0.40 tolerated(0.3) benign(0.003) TCGA-E7-A677-01 5 82835765 82835765 G A VCAN Missense_Mutation p.V2315I 0.12 tolerated(1) benign(0.002) TCGA-E7-A677-01 5 98194720 98194720 C G CHD1 Splice_Site p.X1509_splice 0.42 TCGA-E7-A677-01 6 106968675 106968675 G A AIM1 Missense_Mutation p.V790I 0.44 tolerated(1) benign(0.003) TCGA-E7-A677-01 6 10751451 10751451 C A TMEM14B Missense_Mutation p.N62K 0.76 deleterious(0) benign(0.271) TCGA-E7-A677-01 6 148664260 148664260 G T SASH1 Silent p.P19P 0.15 TCGA-E7-A677-01 6 170594771 170594771 G T DLL1 Missense_Mutation p.Q250K 0.06 tolerated(0.19) benign(0.005) TCGA-E7-A677-01 6 27860950 27860950 G A HIST1H2AM 5'UTR 0.11 TCGA-E7-A677-01 6 30577698 30577698 G C PPP1R10 Silent p.P8P 0.53 TCGA-E7-A677-01 6 31129271 31129271 T A TCF19 Missense_Mutation p.L96M 0.44 deleterious(0) probably_damaging(0.961) TCGA-E7-A677-01 6 41168762 41168762 G A TREML2 5'UTR 0.24 TCGA-E7-A677-01 6 53379250 53379250 G A GCLC Silent p.V202V 0.51 TCGA-E7-A677-01 6 64389969 64389969 G A PHF3 Missense_Mutation p.E105K 0.42 deleterious(0) possibly_damaging(0.856) TCGA-E7-A677-01 6 74161858 74161858 C T MB21D1 Missense_Mutation p.G16E 0.40 tolerated(0.65) benign(0.003) TCGA-E7-A677-01 6 74228432 74228440 TAGACATCC - EEF1A1 In_Frame_Del p.Q251_Y254delinsH 0.37 TCGA-E7-A677-01 6 75970565 75970565 T A TMEM30A Silent p.G172G 0.39 TCGA-E7-A677-01 6 89855956 89855956 C T PM20D2 Silent p.I31I 0.41 TCGA-E7-A677-01 6 90564541 90564541 G T CASP8AP2 RNA 0.47 TCGA-E7-A677-01 7 100180045 100180045 C T LRCH4 Silent p.A86A 0.39 TCGA-E7-A677-01 7 100201601 100201601 T C PCOLCE Missense_Mutation p.V75A 0.39 deleterious(0.05) possibly_damaging(0.9) TCGA-E7-A677-01 7 100687052 100687052 A G MUC17 Missense_Mutation p.I4119V 0.05 unknown(0) TCGA-E7-A677-01 7 106797731 106797731 C T PRKAR2B Missense_Mutation p.A362V 0.42 deleterious(0.01) possibly_damaging(0.86) TCGA-E7-A677-01 7 117243724 117243724 C A CFTR Missense_Mutation p.F932L 0.41 tolerated(0.33) benign(0.003) TCGA-E7-A677-01 7 133994157 133994157 T G SLC35B4 Missense_Mutation p.E51A 0.38 tolerated(0.2) benign(0.006) TCGA-E7-A677-01 7 140507793 140507793 C G BRAF Silent p.V226V 0.48 TCGA-E7-A677-01 7 141464148 141464148 A C TAS2R3 Missense_Mutation p.T64P 0.42 deleterious(0.01) possibly_damaging(0.544) TCGA-E7-A677-01 7 142045304 142045304 G C TRBV4-2 5'UTR 0.33 TCGA-E7-A677-01 7 149430732 149430732 G T KRBA1 Missense_Mutation p.A896S 0.20 tolerated(0.1) benign(0.064) TCGA-E7-A677-01 7 55874888 55874888 T A SEPT14 Missense_Mutation p.E294V 0.42 deleterious(0) probably_damaging(0.995) TCGA-E7-A677-01 7 64863508 64863508 A T ZNF92 Missense_Mutation p.N161Y 0.05 deleterious(0) possibly_damaging(0.883) TCGA-E7-A677-01 7 7273969 7273969 C A C1GALT1 Missense_Mutation p.L7M 0.10 tolerated(0.25) benign(0.011) TCGA-E7-A677-01 7 73151303 73151303 G A ABHD11 Silent p.L257L 0.46 TCGA-E7-A677-01 7 87564353 87564365 TGATGGAGCTAGA - ADAM22 Frame_Shift_Del p.L33* 0.22 TCGA-E7-A677-01 8 126017812 126017812 T C SQLE Missense_Mutation p.I197T 0.57 deleterious(0) benign(0.394) TCGA-E7-A677-01 8 141669683 141669709 TGCTGGAGGCTGGTCATGACATACTGC - PTK2 In_Frame_Del p.Q1019_Q1027del 0.22 TCGA-E7-A677-01 8 17611597 17611597 T A MTUS1 Missense_Mutation p.T574S 0.31 tolerated(0.32) benign(0.255) TCGA-E7-A677-01 8 22019275 22019275 C T SFTPC 5'UTR 0.50 TCGA-E7-A677-01 8 39771492 39771492 T G IDO1 Missense_Mutation p.I17M 0.53 deleterious(0) possibly_damaging(0.852) TCGA-E7-A677-01 8 42837795 42837795 G A HOOK3 Silent p.E449E 0.45 TCGA-E7-A677-01 8 53570068 53570068 C T RB1CC1 Missense_Mutation p.S774N 0.56 tolerated_low_confidence(0.32) benign(0.015) TCGA-E7-A677-01 8 95161064 95161064 A T CDH17 Missense_Mutation p.I612N 0.54 deleterious(0) probably_damaging(0.947) TCGA-E7-A677-01 9 107298497 107298497 C A OR13C3 Missense_Mutation p.G200W 0.39 deleterious(0) probably_damaging(0.964) TCGA-E7-A677-01 9 110250469 110250469 G C KLF4 Missense_Mutation p.T69S 0.09 tolerated(0.4) probably_damaging(0.953) TCGA-E7-A677-01 9 115649691 115649691 G A SLC46A2 Nonsense_Mutation p.R378* 0.41 TCGA-E7-A677-01 9 130098496 130098496 G T GARNL3 Missense_Mutation p.M321I 0.37 tolerated(0.15) possibly_damaging(0.892) TCGA-E7-A677-01 9 139369049 139369049 T C SEC16A Missense_Mutation p.N1007D 0.42 tolerated(0.22) benign(0.004) TCGA-E7-A677-01 9 21971036 21971036 C A CDKN2A Missense_Mutation p.D108Y 0.83 deleterious(0) probably_damaging(1) TCGA-E7-A677-01 9 35618383 35618383 C A CD72 5'UTR 0.86 TCGA-E7-A677-01 9 5563182 5563182 A C PDCD1LG2 Missense_Mutation p.T263P 0.23 tolerated(0.07) possibly_damaging(0.462) TCGA-E7-A677-01 9 74365172 74365172 G T TMEM2 Missense_Mutation p.P40T 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-E7-A677-01 9 86571190 86571190 A G C9orf64 Missense_Mutation p.F76L 0.48 deleterious(0) probably_damaging(0.999) TCGA-E7-A677-01 X 107850106 107850106 G A COL4A5 Silent p.G793G 0.90 TCGA-E7-A677-01 X 107938500 107938500 A G COL4A5 Missense_Mutation p.T1609A 0.92 possibly_damaging(0.888) TCGA-E7-A677-01 X 153760417 153760417 G C G6PD Silent p.P511P 0.16 TCGA-E7-A677-01 X 21675859 21675859 G T KLHL34 Silent p.L16L 0.86 TCGA-E7-A677-01 X 32466660 32466660 T G DMD Missense_Mutation p.Q1233H 0.41 probably_damaging(0.948) TCGA-E7-A677-01 X 44922864 44922864 C T KDM6A Silent p.G575G 0.88 TCGA-E7-A677-01 X 53634540 53634540 C G HUWE1 Missense_Mutation p.D814H 0.88 probably_damaging(0.997) TCGA-E7-A677-01 X 8434364 8434364 G A VCX3B Silent p.E227E 0.10 TCGA-E7-A678-01 10 129906464 129906464 G T MKI67 Missense_Mutation p.P1214T 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-E7-A678-01 10 133930627 133930627 G A JAKMIP3 Missense_Mutation p.R61H 0.50 deleterious(0) probably_damaging(0.954) TCGA-E7-A678-01 10 17191111 17191111 C T TRDMT1 Silent p.Q368Q 0.43 TCGA-E7-A678-01 10 48390292 48390292 C T RBP3 Missense_Mutation p.V196M 0.47 deleterious(0) probably_damaging(0.995) TCGA-E7-A678-01 11 118039397 118039397 C T SCN2B Missense_Mutation p.R47H 0.48 deleterious(0.01) probably_damaging(0.97) TCGA-E7-A678-01 12 113303255 113303255 C T RPH3A Silent p.N89N 0.46 TCGA-E7-A678-01 12 18891514 18891514 C A CAPZA3 Silent p.I104I 0.27 TCGA-E7-A678-01 12 40758799 40758799 G A LRRK2 Missense_Mutation p.R2446H 0.37 tolerated(0.18) benign(0.007) TCGA-E7-A678-01 12 49444668 49444668 C T KMT2D Splice_Site p.X933_splice 0.41 TCGA-E7-A678-01 12 9147760 9147760 G A KLRG1 Missense_Mutation p.R78H 0.15 tolerated(0.5) benign(0) TCGA-E7-A678-01 13 95696558 95696558 T C ABCC4 Missense_Mutation p.I1197M 0.48 deleterious(0) probably_damaging(0.995) TCGA-E7-A678-01 14 38061317 38061317 G T FOXA1 Missense_Mutation p.F224L 0.37 deleterious(0) probably_damaging(1) TCGA-E7-A678-01 14 59798592 59798592 A G DAAM1 Missense_Mutation p.D641G 0.49 deleterious(0) probably_damaging(0.999) TCGA-E7-A678-01 14 78365543 78365543 A G ADCK1 Missense_Mutation p.N228S 0.49 tolerated(0.07) benign(0.029) TCGA-E7-A678-01 14 97299866 97299866 G T VRK1 Missense_Mutation p.A20S 0.51 tolerated(0.13) possibly_damaging(0.853) TCGA-E7-A678-01 15 22845769 22845769 A G TUBGCP5 Silent p.P210P 0.44 TCGA-E7-A678-01 15 23318592 23318592 C T HERC2P2 RNA 0.11 TCGA-E7-A678-01 15 86253861 86253861 A T AKAP13 Missense_Mutation p.I1866F 0.61 deleterious(0.02) probably_damaging(0.947) TCGA-E7-A678-01 15 91424938 91424938 C T FURIN Missense_Mutation p.R739C 0.04 deleterious(0) probably_damaging(0.925) TCGA-E7-A678-01 16 68156372 68156372 T A NFATC3 Missense_Mutation p.L196M 0.22 deleterious(0) probably_damaging(0.999) TCGA-E7-A678-01 17 10427872 10427872 C A MYH2 Missense_Mutation p.A1696S 0.43 tolerated(0.53) benign(0.011) TCGA-E7-A678-01 17 1359265 1359265 G A CRK Silent p.L49L 0.19 TCGA-E7-A678-01 17 72348386 72348386 G - KIF19 Frame_Shift_Del p.E630Kfs*45 0.24 TCGA-E7-A678-01 17 8283238 8283238 T C RPL26 Missense_Mutation p.Y62C 0.42 tolerated(0.05) benign(0.084) TCGA-E7-A678-01 19 36494329 36494329 G A SYNE4 Silent p.P375P 0.34 TCGA-E7-A678-01 19 4013124 4013124 G A PIAS4 Silent p.P77P 0.39 TCGA-E7-A678-01 19 4054957 4054957 C T ZBTB7A Missense_Mutation p.A92T 0.18 deleterious(0) probably_damaging(1) TCGA-E7-A678-01 19 46857125 46857125 C T PPP5C Missense_Mutation p.A81V 0.58 deleterious(0) probably_damaging(0.999) TCGA-E7-A678-01 19 55386785 55386785 G C FCAR Splice_Site p.X12_splice 0.47 TCGA-E7-A678-01 19 8971700 8971700 G A MUC16 Nonsense_Mutation p.Q14298* 0.15 TCGA-E7-A678-01 1 110884591 110884591 A G RBM15 Missense_Mutation p.N855S 0.49 tolerated(0.44) benign(0.055) TCGA-E7-A678-01 1 182355519 182355519 G A GLUL Missense_Mutation p.T116I 0.14 tolerated(0.07) benign(0.008) TCGA-E7-A678-01 1 27121660 27121660 G T PIGV Missense_Mutation p.V379L 0.35 tolerated(0.07) probably_damaging(0.967) TCGA-E7-A678-01 1 42046994 42046994 A G HIVEP3 Missense_Mutation p.S1159P 0.42 benign(0.008) TCGA-E7-A678-01 1 79403908 79403908 C A ELTD1 Silent p.V151V 0.49 TCGA-E7-A678-01 20 31375123 31375123 A G DNMT3B Missense_Mutation p.T174A 0.34 tolerated_low_confidence(0.75) possibly_damaging(0.585) TCGA-E7-A678-01 20 55012585 55012585 C T CASS4 Silent p.P134P 0.46 TCGA-E7-A678-01 22 41560092 41560092 A G EP300 Missense_Mutation p.H1255R 0.34 probably_damaging(0.999) TCGA-E7-A678-01 2 179734027 179734027 C G CCDC141 Missense_Mutation p.L737F 0.47 deleterious(0) possibly_damaging(0.883) TCGA-E7-A678-01 2 206608146 206608146 A T NRP2 Missense_Mutation p.Q504L 0.40 deleterious(0) possibly_damaging(0.886) TCGA-E7-A678-01 2 207175836 207175836 A G ZDBF2 Missense_Mutation p.Y2195C 0.26 tolerated(0.3) benign(0) TCGA-E7-A678-01 2 25459821 25459821 T C DNMT3A Missense_Mutation p.H821R 0.42 tolerated(0.18) probably_damaging(0.984) TCGA-E7-A678-01 2 90121950 90121950 C T IGKV1D-17 Silent p.A56A 0.35 TCGA-E7-A678-01 3 105264031 105264031 A T ALCAM Intron 0.53 TCGA-E7-A678-01 3 150659508 150659508 G A CLRN1 Silent p.H98H 0.47 TCGA-E7-A678-01 3 183689384 183689384 C A ABCC5 Missense_Mutation p.R576S 0.45 tolerated(0.87) benign(0.004) TCGA-E7-A678-01 3 186386767 186386767 C T HRG Missense_Mutation p.S76L 0.43 deleterious(0) possibly_damaging(0.651) TCGA-E7-A678-01 3 48310795 48310795 A G ZNF589 3'UTR 0.57 TCGA-E7-A678-01 3 73437193 73437193 C T PDZRN3 Missense_Mutation p.E482K 0.46 deleterious(0) probably_damaging(0.915) TCGA-E7-A678-01 4 108831612 108831612 C T SGMS2 Missense_Mutation p.S334F 0.45 deleterious(0.02) benign(0.419) TCGA-E7-A678-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.56 deleterious(0.01) possibly_damaging(0.594) TCGA-E7-A678-01 4 88533533 88533533 T A DSPP Missense_Mutation p.D65E 0.37 benign(0.011) TCGA-E7-A678-01 5 37697884 37697884 A G WDR70 Intron 0.47 TCGA-E7-A678-01 5 74654524 74654524 G T HMGCR Nonsense_Mutation p.E677* 0.46 TCGA-E7-A678-01 5 94288993 94288993 T A MCTP1 Missense_Mutation p.N304I 0.50 deleterious(0) probably_damaging(0.965) TCGA-E7-A678-01 6 152792774 152792774 G A SYNE1 Silent p.Y530Y 0.47 TCGA-E7-A678-01 6 26247113 26247113 G A HIST1H4G Silent p.T31T 0.59 TCGA-E7-A678-01 6 31869059 31869059 C T ZBTB12 Silent p.L8L 0.55 TCGA-E7-A678-01 6 3225690 3225690 G A TUBB2B Silent p.C211C 0.10 TCGA-E7-A678-01 6 42237177 42237177 G A TRERF1 Missense_Mutation p.S51L 0.26 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-E7-A678-01 6 46661281 46661281 G C TDRD6 Missense_Mutation p.E1806Q 0.24 tolerated(0.06) benign(0.028) TCGA-E7-A678-01 7 142120306 142120306 G A TRBV7-7 Silent p.L6L 0.07 TCGA-E7-A678-01 9 35092731 35092731 T G PIGO Missense_Mutation p.T385P 0.42 deleterious(0.01) benign(0.011) TCGA-E7-A678-01 9 77397394 77397394 T A TRPM6 Splice_Site p.X1032_splice 0.52 TCGA-E7-A678-01 X 123184133 123184134 - A STAG2 Nonsense_Mutation p.Y331* 0.49 TCGA-E7-A678-01 X 44870204 44870204 A T KDM6A Splice_Site p.X129_splice 0.93 TCGA-E7-A6MD-01 10 102541061 102541061 C T PAX2 Silent p.Y185Y 0.36 TCGA-E7-A6MD-01 10 102740381 102740381 C T SEMA4G Silent p.H466H 0.28 TCGA-E7-A6MD-01 10 103550655 103550655 C T MGEA5 Missense_Mutation p.E818K 0.24 tolerated(0.1) possibly_damaging(0.872) TCGA-E7-A6MD-01 10 104129685 104129685 C T GBF1 Missense_Mutation p.R1094W 0.14 deleterious(0) probably_damaging(0.995) TCGA-E7-A6MD-01 10 105793805 105793805 C G COL17A1 Missense_Mutation p.E1352Q 0.23 unknown(0) TCGA-E7-A6MD-01 10 118458188 118458188 G A HSPA12A Silent p.I168I 0.17 TCGA-E7-A6MD-01 10 120095864 120095864 C T FAM204A Missense_Mutation p.E22K 0.14 deleterious(0.04) possibly_damaging(0.788) TCGA-E7-A6MD-01 10 123239508 123239508 C T FGFR2 Missense_Mutation p.E778K 0.11 tolerated(0.06) probably_damaging(0.997) TCGA-E7-A6MD-01 10 123976234 123976234 G C TACC2 Missense_Mutation p.Q2479H 0.19 possibly_damaging(0.865) TCGA-E7-A6MD-01 10 124189469 124189469 G A PLEKHA1 3'UTR 0.24 TCGA-E7-A6MD-01 10 124331831 124331831 T C DMBT1 Silent p.G63G 0.13 TCGA-E7-A6MD-01 10 124755678 124755678 C T IKZF5 Missense_Mutation p.D50N 0.11 tolerated(0.38) benign(0.001) TCGA-E7-A6MD-01 10 128193261 128193261 C G C10orf90 Missense_Mutation p.E170Q 0.31 tolerated(0.84) benign(0.007) TCGA-E7-A6MD-01 10 128796359 128796359 C G DOCK1 Missense_Mutation p.Q205E 0.40 tolerated(0.85) benign(0.042) TCGA-E7-A6MD-01 10 129906935 129906935 C T MKI67 Missense_Mutation p.E1057K 0.14 tolerated(0.05) probably_damaging(0.925) TCGA-E7-A6MD-01 10 22675786 22675786 T A SPAG6 Missense_Mutation p.S192R 0.31 deleterious(0.02) possibly_damaging(0.903) TCGA-E7-A6MD-01 10 38344684 38344684 G A ZNF33A Silent p.Q544Q 0.13 TCGA-E7-A6MD-01 10 55582248 55582248 G T PCDH15 Silent p.P1748P 0.35 TCGA-E7-A6MD-01 10 65358945 65358945 A G REEP3 Missense_Mutation p.I107V 0.30 deleterious(0.04) possibly_damaging(0.903) TCGA-E7-A6MD-01 10 69961739 69961739 G C MYPN Missense_Mutation p.R1216T 0.12 tolerated(0.49) probably_damaging(0.977) TCGA-E7-A6MD-01 10 70333944 70333944 C T TET1 Nonsense_Mutation p.Q617* 0.23 TCGA-E7-A6MD-01 10 73499506 73499506 G C CDH23 Missense_Mutation p.E1494Q 0.38 tolerated(0.53) probably_damaging(0.943) TCGA-E7-A6MD-01 10 75559947 75559947 G A ZSWIM8 Missense_Mutation p.G1615E 0.14 tolerated(0.25) benign(0) TCGA-E7-A6MD-01 10 75576812 75576812 C G CAMK2G Silent p.G469G 0.23 TCGA-E7-A6MD-01 10 75577299 75577299 C T CAMK2G Silent p.E427E 0.30 TCGA-E7-A6MD-01 10 89550137 89550137 T A ATAD1 Missense_Mutation p.K104N 0.10 tolerated(0.07) benign(0.066) TCGA-E7-A6MD-01 10 93767898 93767898 C G BTAF1 Missense_Mutation p.P1227A 0.12 tolerated(0.08) benign(0.119) TCGA-E7-A6MD-01 10 95537197 95537197 C G LGI1 Missense_Mutation p.L117V 0.13 deleterious(0) probably_damaging(0.996) TCGA-E7-A6MD-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.30 TCGA-E7-A6MD-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.09 TCGA-E7-A6MD-01 10 98744149 98744149 G C C10orf12 Missense_Mutation p.R1001T 0.15 deleterious(0) probably_damaging(0.969) TCGA-E7-A6MD-01 10 99228753 99228753 G C MMS19 Missense_Mutation p.L345V 0.27 deleterious(0) possibly_damaging(0.841) TCGA-E7-A6MD-01 11 100999120 100999120 C T PGR Missense_Mutation p.E228K 0.42 deleterious_low_confidence(0.01) benign(0.242) TCGA-E7-A6MD-01 11 104820372 104820372 C T CASP4 Missense_Mutation p.D227N 0.24 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 11 122930538 122930538 C T HSPA8 Missense_Mutation p.E255K 0.57 tolerated_low_confidence(0.48) benign(0.077) TCGA-E7-A6MD-01 11 122930727 122930727 C G HSPA8 Missense_Mutation p.E192Q 0.49 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-E7-A6MD-01 11 124252787 124252787 C T OR8B2 Missense_Mutation p.M151I 0.53 tolerated_low_confidence(0.15) benign(0.004) TCGA-E7-A6MD-01 11 124440706 124440706 G C OR8A1 Missense_Mutation p.E248Q 0.44 tolerated(0.1) benign(0.262) TCGA-E7-A6MD-01 11 124509731 124509731 G A SIAE Silent p.D333D 0.44 TCGA-E7-A6MD-01 11 1274169 1274169 C T MUC5B Missense_Mutation p.S5059L 0.23 unknown(0) TCGA-E7-A6MD-01 11 26743338 26743338 A G SLC5A12 5'UTR 0.35 TCGA-E7-A6MD-01 11 34991767 34991767 C T PDHX Missense_Mutation p.H300Y 0.36 deleterious(0.05) benign(0.327) TCGA-E7-A6MD-01 11 4825670 4825670 C T OR52R1 5'Flank 0.18 TCGA-E7-A6MD-01 11 5142810 5142810 C T OR52A4 RNA 0.42 TCGA-E7-A6MD-01 11 55579131 55579131 C T OR5L1 Silent p.L63L 0.47 TCGA-E7-A6MD-01 11 55653114 55653114 G A TRIM51 Silent p.L70L 0.55 TCGA-E7-A6MD-01 11 57106021 57106021 C G P2RX3 5'UTR 0.19 TCGA-E7-A6MD-01 11 60906235 60906235 C G VPS37C Missense_Mutation p.D23H 0.25 deleterious(0.03) benign(0.025) TCGA-E7-A6MD-01 11 61912705 61912705 G A INCENP Missense_Mutation p.E594K 0.20 deleterious(0.02) unknown(0) TCGA-E7-A6MD-01 11 63995136 63995136 G A NUDT22 Missense_Mutation p.E193K 0.38 deleterious(0) probably_damaging(0.987) TCGA-E7-A6MD-01 11 64111688 64111688 G C CCDC88B Missense_Mutation p.E559Q 0.37 deleterious_low_confidence(0.04) benign(0.035) TCGA-E7-A6MD-01 11 65398045 65398045 C T PCNXL3 Silent p.L1480L 0.10 TCGA-E7-A6MD-01 11 6631497 6631497 G C ILK Missense_Mutation p.E399D 0.24 deleterious(0.01) possibly_damaging(0.839) TCGA-E7-A6MD-01 11 66394062 66394062 T C RBM14 Missense_Mutation p.Y645H 0.12 deleterious(0) unknown(0) TCGA-E7-A6MD-01 11 66463856 66463856 C G SPTBN2 Missense_Mutation p.Q1390H 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-E7-A6MD-01 11 67800437 67800437 G A NDUFS8 Missense_Mutation p.D53N 0.18 tolerated_low_confidence(0.08) benign(0.077) TCGA-E7-A6MD-01 11 68030216 68030216 C T C11orf24 Missense_Mutation p.D83N 0.24 tolerated(0.34) unknown(0) TCGA-E7-A6MD-01 11 68192637 68192637 G A LRP5 Missense_Mutation p.E1102K 0.49 deleterious(0.02) possibly_damaging(0.719) TCGA-E7-A6MD-01 11 68216274 68216274 C T LRP5 Intron 0.25 TCGA-E7-A6MD-01 11 68355440 68355440 G A PPP6R3 Missense_Mutation p.D560N 0.19 deleterious(0) possibly_damaging(0.691) TCGA-E7-A6MD-01 11 69457924 69457924 C T CCND1 Silent p.F108F 0.08 TCGA-E7-A6MD-01 11 69962593 69962593 C T ANO1 Silent p.F295F 0.28 TCGA-E7-A6MD-01 11 72141361 72141361 G A CLPB Silent p.V150V 0.33 TCGA-E7-A6MD-01 11 76873178 76873178 C G MYO7A Silent p.L452L 0.07 TCGA-E7-A6MD-01 12 102045134 102045134 C T MYBPC1 Nonsense_Mutation p.Q472* 0.39 TCGA-E7-A6MD-01 12 106461479 106461479 C G NUAK1 Missense_Mutation p.E363Q 0.20 tolerated(0.16) probably_damaging(0.997) TCGA-E7-A6MD-01 12 108104198 108104198 C T PWP1 Missense_Mutation p.S436F 0.17 tolerated(0.09) benign(0.11) TCGA-E7-A6MD-01 12 110238505 110238505 G A TRPV4 Silent p.L257L 0.18 TCGA-E7-A6MD-01 12 110296515 110296515 G C GLTP Missense_Mutation p.I45M 0.18 deleterious(0.04) benign(0.203) TCGA-E7-A6MD-01 12 125449083 125449083 G A DHX37 Silent p.Y634Y 0.24 TCGA-E7-A6MD-01 12 130184469 130184469 C T TMEM132D Missense_Mutation p.R285H 0.15 deleterious(0.05) benign(0.073) TCGA-E7-A6MD-01 12 130184694 130184694 G A TMEM132D Missense_Mutation p.A210V 0.07 tolerated(0.17) benign(0.078) TCGA-E7-A6MD-01 12 130648300 130648300 C A FZD10 Nonsense_Mutation p.C271* 0.15 TCGA-E7-A6MD-01 12 130648820 130648820 G T FZD10 Missense_Mutation p.G445W 0.36 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 12 14927875 14927875 G A H2AFJ 3'UTR 0.29 TCGA-E7-A6MD-01 12 15822602 15822602 G C EPS8 Nonsense_Mutation p.S121* 0.40 TCGA-E7-A6MD-01 12 16753650 16753650 C G LMO3 Missense_Mutation p.E49Q 0.12 deleterious(0) probably_damaging(0.912) TCGA-E7-A6MD-01 12 21918932 21918932 C A KCNJ8 Missense_Mutation p.V334L 0.40 tolerated(0.64) benign(0.207) TCGA-E7-A6MD-01 12 40010852 40010852 C T ABCD2 Missense_Mutation p.S353N 0.22 deleterious(0) probably_damaging(0.987) TCGA-E7-A6MD-01 12 40646727 40646727 G A LRRK2 Silent p.R399R 0.16 TCGA-E7-A6MD-01 12 40693045 40693045 G C LRRK2 Missense_Mutation p.R1161T 0.20 tolerated(0.32) benign(0.003) TCGA-E7-A6MD-01 12 4488550 4488550 G C FGF23 Missense_Mutation p.Q67E 0.37 deleterious(0) possibly_damaging(0.63) TCGA-E7-A6MD-01 12 48537884 48537884 G C PFKM Missense_Mutation p.E717Q 0.36 deleterious(0.04) possibly_damaging(0.873) TCGA-E7-A6MD-01 12 48884604 48884604 G C C12orf54 Missense_Mutation p.D60H 0.25 deleterious(0) probably_damaging(0.979) TCGA-E7-A6MD-01 12 49251975 49251975 G C RND1 Nonsense_Mutation p.S168* 0.15 TCGA-E7-A6MD-01 12 5020636 5020636 A G KCNA1 Missense_Mutation p.D31G 0.16 tolerated(0.6) benign(0.045) TCGA-E7-A6MD-01 12 5021138 5021138 C A KCNA1 Missense_Mutation p.F198L 0.16 tolerated(1) benign(0) TCGA-E7-A6MD-01 12 53607357 53607357 A G RARG Missense_Mutation p.F314S 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-E7-A6MD-01 12 53877732 53877732 C T MAP3K12 Missense_Mutation p.E441K 0.14 tolerated(0.08) benign(0.157) TCGA-E7-A6MD-01 12 54930822 54930822 C G NCKAP1L Silent p.L1056L 0.18 TCGA-E7-A6MD-01 12 57910863 57910863 G A DDIT3 Missense_Mutation p.P103L 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-E7-A6MD-01 12 667231 667231 C T B4GALNT3 Nonsense_Mutation p.Q862* 0.40 TCGA-E7-A6MD-01 12 69968680 69968680 G A FRS2 Missense_Mutation p.R491Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-E7-A6MD-01 12 70953064 70953064 G A PTPRB Intron 0.33 TCGA-E7-A6MD-01 12 88457844 88457844 G A CEP290 Nonsense_Mutation p.Q2062* 0.33 TCGA-E7-A6MD-01 12 98941616 98941616 G C TMPO Missense_Mutation p.D340H 0.13 tolerated_low_confidence(0.06) benign(0.206) TCGA-E7-A6MD-01 13 109793596 109793596 C G MYO16 Missense_Mutation p.P1657R 0.46 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-E7-A6MD-01 13 26343235 26343235 G A ATP8A2 Silent p.V812V 0.28 TCGA-E7-A6MD-01 13 26621193 26621193 C T SHISA2 Missense_Mutation p.V116M 0.33 deleterious(0.01) probably_damaging(1) TCGA-E7-A6MD-01 13 32914214 32914214 C G BRCA2 Missense_Mutation p.L1908V 0.38 tolerated(0.65) benign(0.02) TCGA-E7-A6MD-01 13 38320374 38320374 G T TRPC4 Silent p.I199I 0.23 TCGA-E7-A6MD-01 13 42734247 42734247 G A DGKH Nonsense_Mutation p.W277* 0.26 TCGA-E7-A6MD-01 14 105353090 105353090 C T CEP170B Silent p.V838V 0.55 TCGA-E7-A6MD-01 14 50910682 50910682 C T MAP4K5 Missense_Mutation p.R471Q 0.40 tolerated(0.59) benign(0.009) TCGA-E7-A6MD-01 14 65241902 65241902 C T SPTB Missense_Mutation p.E1595K 0.27 deleterious(0) probably_damaging(0.981) TCGA-E7-A6MD-01 14 68112474 68112474 C T ARG2 Silent p.L159L 0.45 TCGA-E7-A6MD-01 14 69256523 69256524 - T ZFP36L1 Frame_Shift_Ins p.N248Kfs*2 0.16 TCGA-E7-A6MD-01 14 69847347 69847347 C G ERH Missense_Mutation p.D75H 0.29 tolerated(0.11) benign(0.017) TCGA-E7-A6MD-01 14 72985134 72985134 A T RGS6 Missense_Mutation p.Q389H 0.42 tolerated(0.07) benign(0.044) TCGA-E7-A6MD-01 14 75514212 75514212 G C MLH3 Missense_Mutation p.S716C 0.42 tolerated(0.05) possibly_damaging(0.873) TCGA-E7-A6MD-01 15 102211934 102211934 C G TARSL2 Missense_Mutation p.L602F 0.21 deleterious(0) probably_damaging(0.991) TCGA-E7-A6MD-01 15 20642567 20642567 G A HERC2P3 RNA 0.22 TCGA-E7-A6MD-01 15 23932050 23932050 G A NDN Silent p.L105L 0.04 TCGA-E7-A6MD-01 15 32912326 32912326 A G ARHGAP11A Silent p.V49V 0.25 TCGA-E7-A6MD-01 15 34021165 34021165 C G RYR3 Missense_Mutation p.L2381V 0.37 probably_damaging(0.936) TCGA-E7-A6MD-01 15 34040396 34040396 G C RYR3 Missense_Mutation p.E2691Q 0.16 possibly_damaging(0.835) TCGA-E7-A6MD-01 15 43242520 43242520 C G UBR1 Missense_Mutation p.R1683T 0.21 deleterious(0) possibly_damaging(0.656) TCGA-E7-A6MD-01 15 43498760 43498760 G A EPB42 Silent p.N492N 0.15 TCGA-E7-A6MD-01 15 44093903 44093903 C T HYPK Intron 0.42 TCGA-E7-A6MD-01 15 44914486 44914486 G A SPG11 Silent p.F792F 0.07 TCGA-E7-A6MD-01 15 51834638 51834638 C G DMXL2 Missense_Mutation p.E333Q 0.18 tolerated(0.28) possibly_damaging(0.632) TCGA-E7-A6MD-01 15 57910380 57910380 C G MYZAP Missense_Mutation p.I104M 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 15 58830605 58830605 C T LIPC Silent p.L54L 0.21 TCGA-E7-A6MD-01 15 58974419 58974419 G C ADAM10 Missense_Mutation p.H101D 0.24 deleterious(0.02) benign(0.082) TCGA-E7-A6MD-01 15 66782823 66782823 C T SNAPC5 3'Flank 0.16 TCGA-E7-A6MD-01 15 74588092 74588092 C G CCDC33 Intron 0.37 TCGA-E7-A6MD-01 15 75949466 75949466 G T SNX33 Missense_Mutation p.M545I 0.14 tolerated(0.53) probably_damaging(0.968) TCGA-E7-A6MD-01 15 79178556 79178556 C T MORF4L1 Nonsense_Mutation p.Q116* 0.21 TCGA-E7-A6MD-01 15 85383292 85383292 C G ALPK3 Nonsense_Mutation p.S463* 0.26 TCGA-E7-A6MD-01 15 85607643 85607643 C G PDE8A Missense_Mutation p.Q77E 0.25 tolerated(0.12) benign(0.003) TCGA-E7-A6MD-01 15 89169933 89169933 C T AEN Missense_Mutation p.R165W 0.16 deleterious(0.04) probably_damaging(0.912) TCGA-E7-A6MD-01 15 89415281 89415281 G A ACAN Missense_Mutation p.E2385K 0.07 deleterious(0) probably_damaging(0.937) TCGA-E7-A6MD-01 16 10996592 10996592 C G CIITA Missense_Mutation p.L236V 0.15 deleterious(0.04) benign(0.012) TCGA-E7-A6MD-01 16 20337687 20337687 G T GP2 Missense_Mutation p.L23M 0.12 tolerated(0.08) probably_damaging(0.971) TCGA-E7-A6MD-01 16 20857566 20857566 G C AC004381.6 Missense_Mutation p.K716N 0.21 deleterious(0.01) possibly_damaging(0.756) TCGA-E7-A6MD-01 16 20975882 20975882 A T DNAH3 Missense_Mutation p.D3108E 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-E7-A6MD-01 16 23678372 23678372 C G DCTN5 Silent p.L152L 0.39 TCGA-E7-A6MD-01 16 2571043 2571043 C G AMDHD2 Silent p.L93L 0.17 TCGA-E7-A6MD-01 16 2812136 2812136 C T SRRM2 Missense_Mutation p.S536F 0.38 benign(0.184) TCGA-E7-A6MD-01 16 3190757 3190757 G C ZNF213 Missense_Mutation p.Q263H 0.35 tolerated(0.08) possibly_damaging(0.467) TCGA-E7-A6MD-01 16 51174974 51174974 C G SALL1 Missense_Mutation p.A387P 0.15 deleterious(0.05) benign(0.432) TCGA-E7-A6MD-01 16 58550536 58550536 G C SETD6 Missense_Mutation p.E211Q 0.24 deleterious(0.03) possibly_damaging(0.882) TCGA-E7-A6MD-01 16 58550743 58550743 G A SETD6 Missense_Mutation p.E235K 0.18 deleterious(0.01) probably_damaging(0.938) TCGA-E7-A6MD-01 16 67263486 67263486 C G FHOD1 3'UTR 0.35 TCGA-E7-A6MD-01 16 67263589 67263589 C T FHOD1 Missense_Mutation p.D1149N 0.25 deleterious(0) probably_damaging(0.954) TCGA-E7-A6MD-01 16 68725808 68725808 G A CDH3 Missense_Mutation p.G661R 0.35 tolerated(0.12) probably_damaging(1) TCGA-E7-A6MD-01 16 72828812 72828812 G A ZFHX3 Missense_Mutation p.S2590F 0.33 unknown(0) TCGA-E7-A6MD-01 16 72863744 72863744 C T ZFHX3 Missense_Mutation p.D1155N 0.09 benign(0.236) TCGA-E7-A6MD-01 16 74943792 74943792 C T WDR59 Silent p.Q471Q 0.31 TCGA-E7-A6MD-01 16 74949825 74949825 C T WDR59 Silent p.Q389Q 0.22 TCGA-E7-A6MD-01 16 75681683 75681683 C T KARS 5'Flank 0.33 TCGA-E7-A6MD-01 16 76482801 76482801 C T CNTNAP4 Missense_Mutation p.H269Y 0.20 deleterious(0.04) benign(0.012) TCGA-E7-A6MD-01 16 85832890 85832890 C T EMC8 Silent p.V4V 0.53 TCGA-E7-A6MD-01 16 89167161 89167161 G A ACSF3 Silent p.A24A 0.22 TCGA-E7-A6MD-01 16 89167230 89167230 C G ACSF3 Missense_Mutation p.F47L 0.16 deleterious(0) possibly_damaging(0.682) TCGA-E7-A6MD-01 16 89349171 89349171 G A ANKRD11 Missense_Mutation p.S1260L 0.22 benign(0.002) TCGA-E7-A6MD-01 16 89816263 89816263 G A FANCA Silent p.L1038L 0.40 TCGA-E7-A6MD-01 17 10204269 10204269 C T MYH13 Silent p.%3D 0.49 TCGA-E7-A6MD-01 17 10250074 10250074 C T MYH13 Missense_Mutation p.E396K 0.16 deleterious(0) benign(0.102) TCGA-E7-A6MD-01 17 15974947 15974947 C G NCOR1 Missense_Mutation p.D1310H 0.22 possibly_damaging(0.866) TCGA-E7-A6MD-01 17 38519926 38519926 C T GJD3 Missense_Mutation p.E48K 0.40 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 17 38910644 38910644 C A KRT25 Missense_Mutation p.R169I 0.29 deleterious(0) probably_damaging(0.953) TCGA-E7-A6MD-01 17 39919550 39919550 C G JUP Missense_Mutation p.K394N 0.49 deleterious(0.03) benign(0.055) TCGA-E7-A6MD-01 17 40179648 40179648 C T ZNF385C Intron 0.19 TCGA-E7-A6MD-01 17 41174315 41174315 C G VAT1 Missense_Mutation p.E9Q 0.22 tolerated(0.18) possibly_damaging(0.557) TCGA-E7-A6MD-01 17 41622708 41622708 C T ETV4 Missense_Mutation p.E30K 0.36 tolerated(0.71) benign(0.179) TCGA-E7-A6MD-01 17 42941053 42941053 G A EFTUD2 Silent p.L461L 0.46 TCGA-E7-A6MD-01 17 60038445 60038445 C G MED13 Missense_Mutation p.E1755Q 0.17 tolerated(0.11) probably_damaging(0.988) TCGA-E7-A6MD-01 17 60042371 60042371 C T MED13 Missense_Mutation p.E1614K 0.14 deleterious(0.02) benign(0.025) TCGA-E7-A6MD-01 17 61957719 61957719 C T GH2 3'UTR 0.15 TCGA-E7-A6MD-01 17 62049171 62049171 G C SCN4A Missense_Mutation p.I174M 0.08 deleterious(0) benign(0.161) TCGA-E7-A6MD-01 17 63534365 63534365 C G AXIN2 Missense_Mutation p.E386Q 0.07 deleterious(0.02) benign(0.255) TCGA-E7-A6MD-01 17 64961105 64961105 C T CACNG4 Silent p.I26I 0.23 TCGA-E7-A6MD-01 17 66366590 66366590 A G ARSG Missense_Mutation p.N303D 0.27 deleterious(0) probably_damaging(0.969) TCGA-E7-A6MD-01 17 67125787 67125787 G A ABCA6 Silent p.V299V 0.15 TCGA-E7-A6MD-01 17 70120135 70120135 G T SOX9 Silent p.A379A 0.23 TCGA-E7-A6MD-01 17 72249948 72249948 C A TTYH2 Silent p.I500I 0.19 TCGA-E7-A6MD-01 17 73499210 73499210 C T CASKIN2 Missense_Mutation p.E649K 0.33 deleterious(0) probably_damaging(0.959) TCGA-E7-A6MD-01 17 73735784 73735784 G A ITGB4 Missense_Mutation p.R751Q 0.11 tolerated(0.18) benign(0.006) TCGA-E7-A6MD-01 17 73739924 73739924 C A ITGB4 Silent p.G1031G 0.18 TCGA-E7-A6MD-01 17 74004086 74004086 C A EVPL Nonsense_Mutation p.E1734* 0.18 TCGA-E7-A6MD-01 17 74004540 74004540 C G EVPL Missense_Mutation p.Q1582H 0.15 tolerated(0.24) benign(0.025) TCGA-E7-A6MD-01 17 7405017 7405017 G A POLR2A Missense_Mutation p.G773E 0.58 probably_damaging(1) TCGA-E7-A6MD-01 17 74080125 74080125 C T EXOC7 Silent p.K689K 0.30 TCGA-E7-A6MD-01 17 74169827 74169827 C T RNF157 Silent p.L84L 0.13 TCGA-E7-A6MD-01 17 7466485 7466485 G A SENP3 Missense_Mutation p.R31H 0.61 tolerated_low_confidence(0.27) unknown(0) TCGA-E7-A6MD-01 17 80279952 80279952 C A SECTM1 3'UTR 0.15 TCGA-E7-A6MD-01 17 8168743 8168743 C T PFAS Silent p.L806L 0.48 TCGA-E7-A6MD-01 17 8424209 8424209 C A MYH10 Nonsense_Mutation p.E754* 0.16 TCGA-E7-A6MD-01 18 21413861 21413861 G A LAMA3 Missense_Mutation p.E965K 0.22 possibly_damaging(0.896) TCGA-E7-A6MD-01 18 24442207 24442207 C T AQP4 Missense_Mutation p.G129E 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 18 40323575 40323575 C T RIT2 Silent p.R179R 0.25 TCGA-E7-A6MD-01 18 45566389 45566389 G A ZBTB7C Nonsense_Mutation p.Q364* 0.19 TCGA-E7-A6MD-01 18 55315808 55315808 G A ATP8B1 Missense_Mutation p.S1223F 0.15 deleterious(0) possibly_damaging(0.542) TCGA-E7-A6MD-01 18 8784377 8784377 G C SOGA2 Missense_Mutation p.E423Q 0.27 deleterious(0) probably_damaging(0.99) TCGA-E7-A6MD-01 19 12474396 12474396 G C ZNF442 Missense_Mutation p.S17C 0.10 deleterious(0.04) benign(0.129) TCGA-E7-A6MD-01 19 13248163 13248163 G A NACC1 Missense_Mutation p.R400Q 0.11 deleterious(0) probably_damaging(0.934) TCGA-E7-A6MD-01 19 13409956 13409956 G A CACNA1A Missense_Mutation p.R831C 0.07 probably_damaging(0.942) TCGA-E7-A6MD-01 19 1360624 1360624 C T MUM1 Missense_Mutation p.S236L 0.31 tolerated(0.16) benign(0.255) TCGA-E7-A6MD-01 19 15567440 15567440 C T RASAL3 Silent p.L483L 0.42 TCGA-E7-A6MD-01 19 16601209 16601209 C T CALR3 Silent p.L122L 0.32 TCGA-E7-A6MD-01 19 17323118 17323118 G T MYO9B 3'UTR 0.36 TCGA-E7-A6MD-01 19 17692013 17692013 C G COLGALT1 Silent p.L543L 0.34 TCGA-E7-A6MD-01 19 19612807 19612807 C T GATAD2A Silent p.F510F 0.33 TCGA-E7-A6MD-01 19 23405207 23405207 C T ZNF724P Missense_Mutation p.V614I 0.26 deleterious(0.01) benign(0.064) TCGA-E7-A6MD-01 19 2877596 2877596 C T ZNF556 Missense_Mutation p.R214C 0.33 tolerated(0.2) benign(0.032) TCGA-E7-A6MD-01 19 35230118 35230118 G C ZNF181 Missense_Mutation p.Q25H 0.15 deleterious(0) probably_damaging(0.994) TCGA-E7-A6MD-01 19 35232780 35232780 C A ZNF181 Missense_Mutation p.F498L 0.26 deleterious(0) probably_damaging(0.956) TCGA-E7-A6MD-01 19 36123994 36123994 C G RBM42 Missense_Mutation p.S175C 0.32 tolerated(0.25) possibly_damaging(0.707) TCGA-E7-A6MD-01 19 38572359 38572359 G A SIPA1L3 Missense_Mutation p.E52K 0.36 tolerated(0.43) benign(0.121) TCGA-E7-A6MD-01 19 38782645 38782645 G A SPINT2 Silent p.%3D 0.19 TCGA-E7-A6MD-01 19 39805359 39805359 G A LRFN1 Silent p.F206F 0.33 TCGA-E7-A6MD-01 19 40367816 40367816 C T FCGBP Missense_Mutation p.E4382K 0.23 possibly_damaging(0.674) TCGA-E7-A6MD-01 19 41008399 41008399 C G SPTBN4 Missense_Mutation p.I396M 0.19 deleterious(0) possibly_damaging(0.749) TCGA-E7-A6MD-01 19 42082599 42082599 G A CEACAM21 5'Flank 0.27 TCGA-E7-A6MD-01 19 42526474 42526474 G A GRIK5 Silent p.I502I 0.31 TCGA-E7-A6MD-01 19 43529125 43529125 C G PSG11 Missense_Mutation p.D50H 0.26 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 19 44056322 44056322 C T XRCC1 Missense_Mutation p.R310Q 0.12 tolerated(0.36) benign(0.012) TCGA-E7-A6MD-01 19 44891096 44891096 G A ZNF285 Silent p.F437F 0.37 TCGA-E7-A6MD-01 19 45317864 45317864 G A BCAM Missense_Mutation p.E309K 0.29 tolerated(1) benign(0.003) TCGA-E7-A6MD-01 19 4538169 4538169 G C LRG1 Missense_Mutation p.P276R 0.30 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 19 46270406 46270406 C T SIX5 Missense_Mutation p.D271N 0.38 deleterious(0.01) benign(0.395) TCGA-E7-A6MD-01 19 46328488 46328488 C T SYMPK Missense_Mutation p.V811M 0.33 deleterious(0) possibly_damaging(0.857) TCGA-E7-A6MD-01 19 46823807 46823807 G C HIF3A Missense_Mutation p.G378A 0.39 deleterious(0.04) benign(0.297) TCGA-E7-A6MD-01 19 48389563 48389563 G A SULT2A1 5'UTR 0.14 TCGA-E7-A6MD-01 19 49104485 49104485 G A FAM83E Missense_Mutation p.R440C 0.23 deleterious_low_confidence(0.03) benign(0.005) TCGA-E7-A6MD-01 19 49104486 49104486 G A FAM83E Silent p.L439L 0.24 TCGA-E7-A6MD-01 19 49962307 49962307 C G ALDH16A1 Missense_Mutation p.A95G 0.34 tolerated(0.36) benign(0.004) TCGA-E7-A6MD-01 19 50548384 50548384 G C ZNF473 Missense_Mutation p.W228C 0.26 deleterious(0) probably_damaging(0.971) TCGA-E7-A6MD-01 19 51857659 51857659 G A ETFB Silent p.V78V 0.15 TCGA-E7-A6MD-01 19 52090294 52090294 C G ZNF175 Missense_Mutation p.S237C 0.10 deleterious(0.01) possibly_damaging(0.888) TCGA-E7-A6MD-01 19 52381647 52381647 G C ZNF577 Nonsense_Mutation p.S61* 0.28 TCGA-E7-A6MD-01 19 53612791 53612791 G A ZNF415 Silent p.V169V 0.15 TCGA-E7-A6MD-01 19 53884029 53884029 C G ZNF525 Missense_Mutation p.T66R 0.04 tolerated(0.23) benign(0.001) TCGA-E7-A6MD-01 19 53884216 53884216 C A ZNF525 Missense_Mutation p.H128Q 0.06 tolerated(0.92) benign(0) TCGA-E7-A6MD-01 19 53884834 53884834 G A ZNF525 Silent p.K334K 0.09 TCGA-E7-A6MD-01 19 53957948 53957948 C G ZNF761 RNA 0.11 TCGA-E7-A6MD-01 19 54377146 54377146 C T MYADM Silent p.P121P 0.24 TCGA-E7-A6MD-01 19 54545179 54545179 C T VSTM1 Missense_Mutation p.E182K 0.27 deleterious(0.02) benign(0.06) TCGA-E7-A6MD-01 19 55143114 55143114 G A LILRB1 Silent p.V78V 0.22 TCGA-E7-A6MD-01 19 55715224 55715224 G A PTPRH Missense_Mutation p.S271L 0.31 unknown(0) TCGA-E7-A6MD-01 19 5696311 5696311 C G LONP1 Missense_Mutation p.Q615H 0.18 deleterious(0.01) possibly_damaging(0.798) TCGA-E7-A6MD-01 19 57133342 57133342 C T ZNF71 Silent p.L229L 0.12 TCGA-E7-A6MD-01 19 57910013 57910013 C T ZNF548 Nonsense_Mutation p.Q132* 0.28 TCGA-E7-A6MD-01 19 621835 621835 C A POLRMT Silent p.L621L 0.17 TCGA-E7-A6MD-01 19 622750 622750 G C POLRMT Silent p.V486V 0.27 TCGA-E7-A6MD-01 19 6427163 6427163 C G SLC25A41 Missense_Mutation p.Q297H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A6MD-01 19 651661 651661 G A RNF126 Silent p.L131L 0.31 TCGA-E7-A6MD-01 19 651727 651727 C T RNF126 Silent p.E109E 0.37 TCGA-E7-A6MD-01 19 651729 651729 C T RNF126 Missense_Mutation p.E109K 0.35 tolerated(0.06) probably_damaging(0.976) TCGA-E7-A6MD-01 19 7267552 7267552 G C INSR Silent p.L152L 0.36 TCGA-E7-A6MD-01 19 7590028 7590028 C G MCOLN1 Silent p.V71V 0.25 TCGA-E7-A6MD-01 19 8617036 8617036 C G MYO1F Missense_Mutation p.E173Q 0.17 deleterious(0.05) possibly_damaging(0.901) TCGA-E7-A6MD-01 19 9048822 9048822 G C MUC16 Missense_Mutation p.L10937V 0.29 possibly_damaging(0.801) TCGA-E7-A6MD-01 1 10396725 10396725 A T KIF1B Missense_Mutation p.E972D 0.24 tolerated(0.06) probably_damaging(0.984) TCGA-E7-A6MD-01 1 109756561 109756561 G A SARS 5'UTR 0.16 TCGA-E7-A6MD-01 1 109793756 109793756 G A CELSR2 Missense_Mutation p.R352H 0.40 deleterious(0) probably_damaging(0.932) TCGA-E7-A6MD-01 1 110467773 110467773 C T CSF1 Silent p.L543L 0.15 TCGA-E7-A6MD-01 1 112042613 112042613 A G ADORA3 Intron 0.21 TCGA-E7-A6MD-01 1 113232208 113232208 C G MOV10 Silent p.L171L 0.21 TCGA-E7-A6MD-01 1 113637017 113637017 C G LRIG2 Nonsense_Mutation p.S191* 0.32 TCGA-E7-A6MD-01 1 11737618 11737618 G C MAD2L2 Silent p.V71V 0.37 TCGA-E7-A6MD-01 1 12907944 12907944 C T HNRNPCL1 Missense_Mutation p.V67I 0.14 deleterious(0) benign(0.17) TCGA-E7-A6MD-01 1 147096275 147096275 C T BCL9 Missense_Mutation p.P1266S 0.20 tolerated(0.27) benign(0.019) TCGA-E7-A6MD-01 1 149902556 149902556 G A MTMR11 Intron 0.25 TCGA-E7-A6MD-01 1 154401737 154401737 G C IL6R Missense_Mutation p.E51Q 0.24 tolerated(0.16) benign(0.2) TCGA-E7-A6MD-01 1 155220582 155220582 G T FAM189B Nonsense_Mutation p.S332* 0.25 TCGA-E7-A6MD-01 1 155451157 155451157 G A ASH1L Nonsense_Mutation p.Q502* 0.36 TCGA-E7-A6MD-01 1 155837928 155837928 C T SYT11 Silent p.L69L 0.47 TCGA-E7-A6MD-01 1 155851191 155851191 G A SYT11 Silent p.L396L 0.41 TCGA-E7-A6MD-01 1 156640274 156640274 G A NES Nonsense_Mutation p.Q1236* 0.39 TCGA-E7-A6MD-01 1 157557063 157557063 C G FCRL4 Intron 0.17 TCGA-E7-A6MD-01 1 158618343 158618343 G A SPTA1 Missense_Mutation p.R1224W 0.18 deleterious(0) possibly_damaging(0.606) TCGA-E7-A6MD-01 1 158813775 158813775 G A MNDA Missense_Mutation p.E145K 0.17 tolerated(0.36) benign(0.045) TCGA-E7-A6MD-01 1 159832370 159832370 G C VSIG8 5'UTR 0.29 TCGA-E7-A6MD-01 1 160160734 160160734 G A CASQ1 Missense_Mutation p.E65K 0.24 tolerated(0.06) benign(0.009) TCGA-E7-A6MD-01 1 169811667 169811667 T A C1orf112 Nonsense_Mutation p.L612* 0.18 TCGA-E7-A6MD-01 1 17983194 17983194 C T ARHGEF10L Missense_Mutation p.R951W 0.47 deleterious(0) possibly_damaging(0.726) TCGA-E7-A6MD-01 1 183947620 183947620 C T COLGALT2 Missense_Mutation p.E100K 0.17 tolerated(0.28) benign(0.027) TCGA-E7-A6MD-01 1 186123073 186123073 G C HMCN1 Missense_Mutation p.Q5070H 0.15 benign(0.365) TCGA-E7-A6MD-01 1 186330008 186330008 C G TPR Missense_Mutation p.E330Q 0.37 benign(0.013) TCGA-E7-A6MD-01 1 19447816 19447816 C T UBR4 Silent p.L3336L 0.19 TCGA-E7-A6MD-01 1 19633868 19633868 C T AKR7A2 Missense_Mutation p.E210K 0.49 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 1 20020931 20020931 G C TMCO4 Missense_Mutation p.S499C 0.12 deleterious(0.04) possibly_damaging(0.852) TCGA-E7-A6MD-01 1 20107215 20107215 G T TMCO4 Missense_Mutation p.Q13K 0.09 tolerated_low_confidence(0.41) benign(0.022) TCGA-E7-A6MD-01 1 201751631 201751631 C T NAV1 Missense_Mutation p.A664V 0.32 deleterious(0) probably_damaging(0.927) TCGA-E7-A6MD-01 1 201752566 201752566 C T NAV1 Missense_Mutation p.S797L 0.35 deleterious(0.04) possibly_damaging(0.805) TCGA-E7-A6MD-01 1 201752614 201752614 C T NAV1 Missense_Mutation p.S813L 0.40 tolerated(0.17) benign(0.005) TCGA-E7-A6MD-01 1 201752699 201752699 C T NAV1 Silent p.F841F 0.36 TCGA-E7-A6MD-01 1 207963646 207963646 C G CD46 Intron 0.19 TCGA-E7-A6MD-01 1 210334186 210334186 T A SYT14 Missense_Mutation p.F553L 0.20 deleterious(0) probably_damaging(0.962) TCGA-E7-A6MD-01 1 219366426 219366426 C T LYPLAL1 Missense_Mutation p.S65L 0.17 deleterious(0) benign(0.005) TCGA-E7-A6MD-01 1 228523514 228523514 G A OBSCN Silent p.E6433E 0.40 TCGA-E7-A6MD-01 1 228556459 228556459 G A OBSCN Missense_Mutation p.D7559N 0.33 probably_damaging(0.991) TCGA-E7-A6MD-01 1 230979431 230979431 C T C1orf198 Missense_Mutation p.R199Q 0.17 deleterious(0.01) probably_damaging(1) TCGA-E7-A6MD-01 1 231830177 231830177 G A DISC1 Missense_Mutation p.E225K 0.49 deleterious(0.03) possibly_damaging(0.833) TCGA-E7-A6MD-01 1 231830215 231830215 C T DISC1 Silent p.S237S 0.54 TCGA-E7-A6MD-01 1 232943775 232943775 C T MAP10 Silent p.S1002S 0.13 TCGA-E7-A6MD-01 1 233464285 233464285 G A MLK4 Missense_Mutation p.E171K 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 1 23519706 23519706 G A HTR1D Missense_Mutation p.A336V 0.23 tolerated(0.37) benign(0.01) TCGA-E7-A6MD-01 1 236646455 236646455 G C EDARADD 3'Flank 0.44 TCGA-E7-A6MD-01 1 236646546 236646546 G A EDARADD 3'Flank 0.36 TCGA-E7-A6MD-01 1 236646559 236646559 G T EDARADD 3'Flank 0.36 TCGA-E7-A6MD-01 1 236646765 236646765 G C EDARADD 3'Flank 0.38 TCGA-E7-A6MD-01 1 236647040 236647040 G A EDARADD 3'Flank 0.33 TCGA-E7-A6MD-01 1 23689076 23689076 G A ZNF436 Nonsense_Mutation p.Q267* 0.42 TCGA-E7-A6MD-01 1 237754279 237754279 C T RYR2 Missense_Mutation p.R1383C 0.09 benign(0.332) TCGA-E7-A6MD-01 1 245019335 245019335 C G HNRNPU Missense_Mutation p.E680Q 0.15 tolerated(0.21) unknown(0) TCGA-E7-A6MD-01 1 24771672 24771672 C A NIPAL3 Intron 0.14 TCGA-E7-A6MD-01 1 248366584 248366584 T A OR2M3 Missense_Mutation p.M72K 0.19 deleterious(0) possibly_damaging(0.564) TCGA-E7-A6MD-01 1 25124242 25124242 G T CLIC4 Missense_Mutation p.D28Y 0.43 deleterious(0) possibly_damaging(0.822) TCGA-E7-A6MD-01 1 25628143 25628143 C T RHD Missense_Mutation p.S256L 0.19 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 1 26688465 26688465 G A ZNF683 Missense_Mutation p.R398C 0.14 tolerated(0.06) benign(0.233) TCGA-E7-A6MD-01 1 36372536 36372536 G A AGO1 Silent p.K466K 0.42 TCGA-E7-A6MD-01 1 39800457 39800457 G A MACF1 Intron 0.12 TCGA-E7-A6MD-01 1 39877132 39877132 G A KIAA0754 Missense_Mutation p.D263N 0.21 benign(0.01) TCGA-E7-A6MD-01 1 41486186 41486186 G C SLFNL1 Silent p.L49L 0.37 TCGA-E7-A6MD-01 1 43200871 43200871 C G CLDN19 Intron 0.29 TCGA-E7-A6MD-01 1 44402340 44402340 G A ARTN Missense_Mutation p.R197Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-E7-A6MD-01 1 45228060 45228060 G A KIF2C Silent p.Q598Q 0.54 TCGA-E7-A6MD-01 1 51005271 51005271 C T FAF1 Silent p.V466V 0.12 TCGA-E7-A6MD-01 1 52822056 52822056 C T CC2D1B Missense_Mutation p.R652Q 0.35 deleterious(0) possibly_damaging(0.626) TCGA-E7-A6MD-01 1 55136180 55136180 A T MROH7 Missense_Mutation p.Q467L 0.25 deleterious(0) probably_damaging(0.997) TCGA-E7-A6MD-01 1 57216769 57216769 C G C1orf168 Missense_Mutation p.Q445H 0.14 tolerated(0.1) benign(0.11) TCGA-E7-A6MD-01 1 6525145 6525145 C T TNFRSF25 Intron 0.25 TCGA-E7-A6MD-01 1 6655551 6655551 C T KLHL21 Missense_Mutation p.M498I 0.28 deleterious(0.02) possibly_damaging(0.901) TCGA-E7-A6MD-01 1 67558636 67558636 G T C1orf141 3'UTR 0.15 TCGA-E7-A6MD-01 1 70505178 70505178 C T LRRC7 Missense_Mutation p.A1186V 0.06 tolerated(0.19) benign(0.085) TCGA-E7-A6MD-01 1 77093183 77093183 C T ST6GALNAC3 Silent p.L224L 0.18 TCGA-E7-A6MD-01 1 85647870 85647870 G C SYDE2 Missense_Mutation p.Q819E 0.29 tolerated(0.36) benign(0.027) TCGA-E7-A6MD-01 1 935114 935114 G A HES4 Silent p.L80L 0.14 TCGA-E7-A6MD-01 1 935177 935177 G T HES4 Silent p.P59P 0.12 TCGA-E7-A6MD-01 1 94578588 94578588 G C ABCA4 Missense_Mutation p.S34C 0.38 deleterious(0.04) possibly_damaging(0.827) TCGA-E7-A6MD-01 20 17462487 17462487 C T PCSK2 Silent p.D563D 0.42 TCGA-E7-A6MD-01 20 2083812 2083812 G A STK35 Silent p.K231K 0.50 TCGA-E7-A6MD-01 20 21689954 21689954 G T PAX1 Missense_Mutation p.G385V 0.50 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-E7-A6MD-01 20 25229006 25229006 C T PYGB Silent p.L64L 0.59 TCGA-E7-A6MD-01 20 30804815 30804815 G A POFUT1 Intron 0.08 TCGA-E7-A6MD-01 20 3129845 3129845 A G FASTKD5 5'UTR 0.60 TCGA-E7-A6MD-01 20 31383331 31383331 C A DNMT3B Missense_Mutation p.Q415K 0.09 tolerated(0.16) benign(0.015) TCGA-E7-A6MD-01 20 31954743 31954743 G A CDK5RAP1 Silent p.L488L 0.49 TCGA-E7-A6MD-01 20 34541723 34541723 C A SCAND1 Nonsense_Mutation p.E162* 0.83 TCGA-E7-A6MD-01 20 44751805 44751805 C G CD40 Silent p.V148V 0.49 TCGA-E7-A6MD-01 20 472996 472996 C G CSNK2A1 Missense_Mutation p.D175H 0.50 deleterious(0) probably_damaging(0.996) TCGA-E7-A6MD-01 21 27326968 27326968 C T APP Missense_Mutation p.M541I 0.19 deleterious(0.01) benign(0.392) TCGA-E7-A6MD-01 21 34652086 34652086 G C IL10RB Missense_Mutation p.E121Q 0.20 deleterious(0.02) benign(0.267) TCGA-E7-A6MD-01 21 42647387 42647387 G A BACE2 Missense_Mutation p.E465K 0.18 deleterious(0.01) benign(0.283) TCGA-E7-A6MD-01 21 43334726 43334726 G A C2CD2 Silent p.L275L 0.26 TCGA-E7-A6MD-01 21 43816164 43816164 T A TMPRSS3 5'UTR 0.24 TCGA-E7-A6MD-01 21 45107563 45107563 G T RRP1B Silent p.L436L 0.12 TCGA-E7-A6MD-01 21 45959329 45959329 G A KRTAP10-1 Silent p.L235L 0.29 TCGA-E7-A6MD-01 22 16449124 16449124 G C OR11H1 Silent p.L227L 0.24 TCGA-E7-A6MD-01 22 24039406 24039406 G C RGL4 Missense_Mutation p.D404H 0.16 deleterious(0.03) possibly_damaging(0.612) TCGA-E7-A6MD-01 22 26307008 26307008 C T MYO18B Silent p.L1785L 0.29 TCGA-E7-A6MD-01 22 26895340 26895340 G T TFIP11 Missense_Mutation p.F353L 0.15 tolerated(0.15) benign(0.001) TCGA-E7-A6MD-01 22 29099515 29099515 C A CHEK2 Missense_Mutation p.D339Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-E7-A6MD-01 22 29886018 29886018 G A NEFH Missense_Mutation p.E797K 0.37 tolerated_low_confidence(0.09) probably_damaging(0.979) TCGA-E7-A6MD-01 22 30738222 30738222 C T SF3A1 Missense_Mutation p.V282M 0.26 deleterious(0) probably_damaging(0.995) TCGA-E7-A6MD-01 22 36962439 36962439 T A CACNG2 Missense_Mutation p.N133Y 0.35 deleterious(0.01) benign(0.383) TCGA-E7-A6MD-01 22 38120766 38120766 C T TRIOBP Missense_Mutation p.R735C 0.18 deleterious_low_confidence(0) benign(0.001) TCGA-E7-A6MD-01 22 38333750 38333750 C T MICALL1 Intron 0.37 TCGA-E7-A6MD-01 22 40060093 40060093 C T CACNA1I Intron 0.17 TCGA-E7-A6MD-01 22 41525909 41525909 C T EP300 Missense_Mutation p.S395F 0.40 unknown(0) TCGA-E7-A6MD-01 22 41572327 41572327 T C EP300 Missense_Mutation p.I1619T 0.23 possibly_damaging(0.684) TCGA-E7-A6MD-01 22 42524794 42524794 G T CYP2D6 Missense_Mutation p.L220M 0.09 tolerated(0.24) benign(0.195) TCGA-E7-A6MD-01 22 42962332 42962332 G C SERHL2 Missense_Mutation p.Q212H 0.19 tolerated(0.32) benign(0.03) TCGA-E7-A6MD-01 22 50688575 50688575 G A HDAC10 Silent p.C102C 0.21 TCGA-E7-A6MD-01 22 50716925 50716925 G A PLXNB2 Silent p.I1557I 0.40 TCGA-E7-A6MD-01 2 103353102 103353102 C T MFSD9 Intron 0.38 TCGA-E7-A6MD-01 2 113890543 113890543 G A IL1RN 3'UTR 0.27 TCGA-E7-A6MD-01 2 122215266 122215266 C G CLASP1 Missense_Mutation p.R461T 0.18 deleterious(0) probably_damaging(0.917) TCGA-E7-A6MD-01 2 125547571 125547571 G T CNTNAP5 Missense_Mutation p.V948F 0.11 deleterious(0) benign(0.008) TCGA-E7-A6MD-01 2 128075798 128075798 C G MAP3K2 Missense_Mutation p.E381Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-E7-A6MD-01 2 136481760 136481760 G A R3HDM1 Silent p.Q1066Q 0.45 TCGA-E7-A6MD-01 2 145147383 145147383 C G ZEB2 Missense_Mutation p.E1094Q 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-E7-A6MD-01 2 150432276 150432276 C A MMADHC Missense_Mutation p.M186I 0.28 deleterious(0.01) probably_damaging(0.95) TCGA-E7-A6MD-01 2 152536438 152536438 G C NEB Missense_Mutation p.I1047M 0.30 possibly_damaging(0.888) TCGA-E7-A6MD-01 2 155555252 155555252 C T KCNJ3 5'UTR 0.11 TCGA-E7-A6MD-01 2 160087570 160087570 C A TANC1 3'UTR 0.30 TCGA-E7-A6MD-01 2 160182266 160182266 C G BAZ2B Missense_Mutation p.R2036T 0.16 possibly_damaging(0.87) TCGA-E7-A6MD-01 2 162274332 162274332 A C TBR1 Missense_Mutation p.N280H 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-E7-A6MD-01 2 165550784 165550784 C G COBLL1 Missense_Mutation p.D1078H 0.21 deleterious(0) possibly_damaging(0.832) TCGA-E7-A6MD-01 2 168105957 168105957 A G XIRP2 Silent p.Q2685Q 0.29 TCGA-E7-A6MD-01 2 170038057 170038057 G A LRP2 Missense_Mutation p.S3357F 0.17 possibly_damaging(0.885) TCGA-E7-A6MD-01 2 175983020 175983020 C G ATF2 Missense_Mutation p.E93Q 0.19 deleterious(0.02) possibly_damaging(0.652) TCGA-E7-A6MD-01 2 176988685 176988685 C T HOXD9 Missense_Mutation p.H281Y 0.18 deleterious(0) benign(0.118) TCGA-E7-A6MD-01 2 179468995 179468995 C T TTN Missense_Mutation p.R18140Q 0.23 TCGA-E7-A6MD-01 2 185803652 185803652 C G ZNF804A Missense_Mutation p.L1177V 0.20 deleterious(0.01) probably_damaging(0.952) TCGA-E7-A6MD-01 2 201686914 201686914 C T BZW1 3'UTR 0.12 TCGA-E7-A6MD-01 2 20511352 20511352 C A PUM2 Missense_Mutation p.D141Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.753) TCGA-E7-A6MD-01 2 205990386 205990386 C T PARD3B Silent p.L453L 0.16 TCGA-E7-A6MD-01 2 220332000 220332000 G A SPEG Missense_Mutation p.D996N 0.21 probably_damaging(0.997) TCGA-E7-A6MD-01 2 231118053 231118053 C T SP140 Silent p.T360T 0.35 TCGA-E7-A6MD-01 2 241404541 241404541 C T GPC1 Silent p.I394I 0.36 TCGA-E7-A6MD-01 2 242610825 242610825 G C ATG4B Intron 0.35 TCGA-E7-A6MD-01 2 25978935 25978935 C T ASXL2 Missense_Mutation p.E330K 0.21 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 2 27373017 27373017 G A TCF23 Silent p.A83A 0.26 TCGA-E7-A6MD-01 2 29158441 29158441 C T WDR43 Missense_Mutation p.P498S 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-E7-A6MD-01 2 31483550 31483550 C T EHD3 Missense_Mutation p.T226M 0.49 tolerated(0.15) possibly_damaging(0.836) TCGA-E7-A6MD-01 2 55576698 55576698 C A CCDC88A Nonsense_Mutation p.E280* 0.11 TCGA-E7-A6MD-01 2 60688292 60688292 G A BCL11A Silent p.C585C 0.21 TCGA-E7-A6MD-01 2 63665059 63665059 G A WDPCP Intron 0.18 TCGA-E7-A6MD-01 2 65298804 65298804 C G CEP68 Missense_Mutation p.Q192E 0.14 tolerated(0.12) benign(0.056) TCGA-E7-A6MD-01 2 68544168 68544168 C A CNRIP1 Intron 0.45 TCGA-E7-A6MD-01 2 71576409 71576409 C T ZNF638 Missense_Mutation p.H109Y 0.24 tolerated(1) possibly_damaging(0.451) TCGA-E7-A6MD-01 2 73441448 73441448 C T SMYD5 Silent p.R18R 0.25 TCGA-E7-A6MD-01 2 73989898 73989898 A G DUSP11 Missense_Mutation p.S342P 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.653) TCGA-E7-A6MD-01 2 74761548 74761555 TGTGGTAA - LOXL3 Frame_Shift_Del p.H609Qfs*9 0.12 TCGA-E7-A6MD-01 2 84775483 84775483 G C DNAH6 Missense_Mutation p.E420Q 0.19 tolerated(0.24) benign(0.012) TCGA-E7-A6MD-01 3 10268054 10268054 G T IRAK2 Splice_Site p.X404_splice 0.53 TCGA-E7-A6MD-01 3 113524369 113524369 C G ATP6V1A Missense_Mutation p.F586L 0.37 deleterious(0.01) probably_damaging(0.954) TCGA-E7-A6MD-01 3 119087300 119087300 C G ARHGAP31 Missense_Mutation p.C95W 0.29 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 3 121825276 121825276 C T CD86 Missense_Mutation p.T211M 0.28 tolerated(0.12) possibly_damaging(0.658) TCGA-E7-A6MD-01 3 122247090 122247090 C T PARP9 3'UTR 0.32 TCGA-E7-A6MD-01 3 122259410 122259410 G T PARP9 Silent p.L593L 0.30 TCGA-E7-A6MD-01 3 129156034 129156034 G C MBD4 Missense_Mutation p.I151M 0.28 tolerated(0.07) possibly_damaging(0.502) TCGA-E7-A6MD-01 3 129251498 129251498 C A RHO Missense_Mutation p.F273L 0.35 tolerated(0.81) benign(0.001) TCGA-E7-A6MD-01 3 130884307 130884307 C T NEK11 Nonsense_Mutation p.R374* 0.17 TCGA-E7-A6MD-01 3 132230063 132230063 G A DNAJC13 Silent p.L1756L 0.32 TCGA-E7-A6MD-01 3 133166179 133166179 G A BFSP2 Missense_Mutation p.E170K 0.43 deleterious(0.01) possibly_damaging(0.864) TCGA-E7-A6MD-01 3 133494443 133494443 G C TF Missense_Mutation p.K618N 0.40 tolerated(0.13) benign(0.005) TCGA-E7-A6MD-01 3 134077385 134077385 G C AMOTL2 Missense_Mutation p.L761V 0.26 deleterious_low_confidence(0.04) benign(0.186) TCGA-E7-A6MD-01 3 135720467 135720467 G A PPP2R3A Missense_Mutation p.D43N 0.28 tolerated_low_confidence(0.14) probably_damaging(0.989) TCGA-E7-A6MD-01 3 142394996 142394996 C T PLS1 Intron 0.14 TCGA-E7-A6MD-01 3 142735698 142735698 G C U2SURP Missense_Mutation p.D151H 0.31 deleterious(0.03) benign(0.416) TCGA-E7-A6MD-01 3 14744711 14744711 G C C3orf20 Missense_Mutation p.E274Q 0.47 tolerated(0.09) possibly_damaging(0.662) TCGA-E7-A6MD-01 3 15116333 15116333 C G ZFYVE20 Missense_Mutation p.L437F 0.20 deleterious(0.01) benign(0.14) TCGA-E7-A6MD-01 3 154138908 154138908 G A GPR149 Silent p.L515L 0.17 TCGA-E7-A6MD-01 3 167414821 167414821 G C PDCD10 Missense_Mutation p.R82G 0.30 deleterious(0) probably_damaging(0.971) TCGA-E7-A6MD-01 3 169511424 169511424 C T LRRC34 Silent p.%3D 0.26 TCGA-E7-A6MD-01 3 179287635 179287635 G C ACTL6A Missense_Mutation p.D17H 0.18 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 3 179294609 179294609 C T ACTL6A Intron 0.32 TCGA-E7-A6MD-01 3 184079326 184079326 C T CLCN2 5'UTR 0.32 TCGA-E7-A6MD-01 3 185198067 185198067 C G MAP3K13 Missense_Mutation p.S850C 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A6MD-01 3 196235184 196235184 C A SMCO1 Missense_Mutation p.L73F 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-E7-A6MD-01 3 38649676 38649676 C G SCN5A Missense_Mutation p.D322H 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-E7-A6MD-01 3 44701147 44701147 C G ZNF35 Missense_Mutation p.S431C 0.34 deleterious(0) probably_damaging(0.99) TCGA-E7-A6MD-01 3 46718164 46718164 C T ALS2CL Missense_Mutation p.E666K 0.22 tolerated(0.33) benign(0.008) TCGA-E7-A6MD-01 3 48508256 48508256 T G TREX1 Missense_Mutation p.S123A 0.25 tolerated(0.09) possibly_damaging(0.875) TCGA-E7-A6MD-01 3 48510783 48510783 G T SHISA5 Missense_Mutation p.P207Q 0.35 deleterious(0) probably_damaging(0.991) TCGA-E7-A6MD-01 3 49323707 49323707 G C USP4 Nonsense_Mutation p.S675* 0.21 TCGA-E7-A6MD-01 3 52595952 52595952 C G PBRM1 Missense_Mutation p.K1321N 0.13 deleterious(0.04) possibly_damaging(0.607) TCGA-E7-A6MD-01 3 53910037 53910037 G A ACTR8 Silent p.D283D 0.11 TCGA-E7-A6MD-01 3 62518605 62518605 G C CADPS Missense_Mutation p.I744M 0.13 deleterious(0) possibly_damaging(0.453) TCGA-E7-A6MD-01 3 62751598 62751598 G A CADPS Missense_Mutation p.T168I 0.34 tolerated(0.07) possibly_damaging(0.507) TCGA-E7-A6MD-01 4 113506812 113506812 G A C4orf21 Missense_Mutation p.S1329L 0.27 deleterious(0) possibly_damaging(0.736) TCGA-E7-A6MD-01 4 114430805 114430805 C T CAMK2D Missense_Mutation p.D325N 0.18 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-E7-A6MD-01 4 147561847 147561847 G A POU4F2 Missense_Mutation p.E373K 0.14 deleterious(0) probably_damaging(0.973) TCGA-E7-A6MD-01 4 151749346 151749346 G C LRBA Missense_Mutation p.F1719L 0.19 deleterious_low_confidence(0.01) benign(0.008) TCGA-E7-A6MD-01 4 15613942 15613942 G A FBXL5 Missense_Mutation p.S649L 0.22 tolerated(0.09) possibly_damaging(0.616) TCGA-E7-A6MD-01 4 157688927 157688927 C G PDGFC Missense_Mutation p.E307Q 0.07 deleterious(0.01) probably_damaging(1) TCGA-E7-A6MD-01 4 184572462 184572462 G A RWDD4 Missense_Mutation p.P42S 0.13 tolerated(0.44) benign(0.007) TCGA-E7-A6MD-01 4 21950212 21950212 C T KCNIP4 Missense_Mutation p.E15K 0.54 tolerated_low_confidence(0.23) benign(0) TCGA-E7-A6MD-01 4 26430387 26430387 G A RBPJ Missense_Mutation p.D278N 0.46 deleterious(0) possibly_damaging(0.907) TCGA-E7-A6MD-01 4 40122364 40122364 C A N4BP2 Nonsense_Mutation p.S878* 0.22 TCGA-E7-A6MD-01 4 44705038 44705038 C T GNPDA2 3'UTR 0.20 TCGA-E7-A6MD-01 4 71098717 71098717 C T FDCSP Nonsense_Mutation p.Q22* 0.14 TCGA-E7-A6MD-01 4 71099895 71099895 C T FDCSP Silent p.S83S 0.15 TCGA-E7-A6MD-01 4 72215722 72215722 G A SLC4A4 Silent p.L161L 0.52 TCGA-E7-A6MD-01 4 77055453 77055453 G A NUP54 Silent p.F195F 0.14 TCGA-E7-A6MD-01 4 78652595 78652595 C G CNOT6L Missense_Mutation p.D324H 0.17 deleterious(0) probably_damaging(0.986) TCGA-E7-A6MD-01 4 80329373 80329373 C T GK2 5'Flank 0.31 TCGA-E7-A6MD-01 4 82031655 82031655 G A PRKG2 Silent p.F629F 0.24 TCGA-E7-A6MD-01 4 83828976 83828976 G C THAP9 Missense_Mutation p.E207Q 0.13 deleterious(0.05) benign(0.117) TCGA-E7-A6MD-01 4 88056872 88056872 C G AFF1 3'UTR 0.12 TCGA-E7-A6MD-01 5 108233410 108233410 C T FER Missense_Mutation p.S366L 0.23 tolerated(0.29) benign(0.05) TCGA-E7-A6MD-01 5 110428003 110428003 G T WDR36 Missense_Mutation p.G6V 0.19 deleterious_low_confidence(0.04) benign(0) TCGA-E7-A6MD-01 5 112896816 112896816 C A YTHDC2 Missense_Mutation p.F752L 0.14 deleterious(0.01) possibly_damaging(0.688) TCGA-E7-A6MD-01 5 125824572 125824572 G A GRAMD3 Silent p.V430V 0.25 TCGA-E7-A6MD-01 5 135382962 135382962 G T TGFBI Splice_Site p.X209_splice 0.35 TCGA-E7-A6MD-01 5 137323274 137323274 C T FAM13B Missense_Mutation p.E308K 0.28 deleterious(0) probably_damaging(0.995) TCGA-E7-A6MD-01 5 13839478 13839478 G C DNAH5 Missense_Mutation p.P1957A 0.17 possibly_damaging(0.822) TCGA-E7-A6MD-01 5 139919122 139919122 G A ANKHD1 Intron 0.27 TCGA-E7-A6MD-01 5 140187373 140187373 G A PCDHA4 Missense_Mutation p.D201N 0.18 tolerated_low_confidence(0.06) probably_damaging(0.919) TCGA-E7-A6MD-01 5 140557727 140557727 G C PCDHB8 Missense_Mutation p.E38Q 0.10 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-E7-A6MD-01 5 140745565 140745565 C T PCDHGA5 Silent p.N556N 0.26 TCGA-E7-A6MD-01 5 145649132 145649132 G A RBM27 Silent p.V892V 0.16 TCGA-E7-A6MD-01 5 14871602 14871602 G T ANKH 5'UTR 0.25 TCGA-E7-A6MD-01 5 149375675 149375675 A G TIGD6 Silent p.D79D 0.19 TCGA-E7-A6MD-01 5 150310665 150310665 G A ZNF300P1 RNA 0.17 TCGA-E7-A6MD-01 5 150660715 150660715 G C SLC36A3 Missense_Mutation p.S376C 0.23 tolerated(0.08) benign(0.054) TCGA-E7-A6MD-01 5 156381590 156381590 C A TIMD4 Missense_Mutation p.R79I 0.16 deleterious(0.01) probably_damaging(0.925) TCGA-E7-A6MD-01 5 156890116 156890116 C G NIPAL4 Missense_Mutation p.L80V 0.38 tolerated(0.09) benign(0.021) TCGA-E7-A6MD-01 5 16479024 16479024 G C FAM134B Nonsense_Mutation p.S248* 0.27 TCGA-E7-A6MD-01 5 175998225 175998225 G C CDHR2 Missense_Mutation p.E109D 0.36 tolerated(0.22) benign(0.008) TCGA-E7-A6MD-01 5 176317903 176317903 C G HK3 Missense_Mutation p.D152H 0.13 tolerated(0.1) possibly_damaging(0.841) TCGA-E7-A6MD-01 5 178040553 178040553 G A CLK4 Silent p.F249F 0.35 TCGA-E7-A6MD-01 5 178408753 178408753 G A GRM6 Missense_Mutation p.P847S 0.22 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 5 178552182 178552182 C A ADAMTS2 Splice_Site p.X917_splice 0.14 TCGA-E7-A6MD-01 5 179264268 179264268 G C SQSTM1 3'UTR 0.18 TCGA-E7-A6MD-01 5 180582134 180582134 C T OR2V2 Silent p.L64L 0.20 TCGA-E7-A6MD-01 5 32088772 32088772 G A PDZD2 Missense_Mutation p.D1740N 0.30 tolerated(0.18) benign(0.007) TCGA-E7-A6MD-01 5 34821842 34821842 G A RAI14 Missense_Mutation p.D337N 0.20 tolerated(0.24) benign(0.017) TCGA-E7-A6MD-01 5 55398353 55398353 C T ANKRD55 Missense_Mutation p.R564Q 0.34 tolerated_low_confidence(0.11) benign(0.241) TCGA-E7-A6MD-01 5 63257542 63257542 T A HTR1A Missense_Mutation p.D2V 0.22 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-E7-A6MD-01 5 68470924 68470924 C T CCNB1 Missense_Mutation p.A309V 0.41 deleterious(0) benign(0.049) TCGA-E7-A6MD-01 5 79054602 79054602 C T CMYA5 Nonsense_Mutation p.Q3713* 0.37 TCGA-E7-A6MD-01 5 80409489 80409489 G C RASGRF2 Silent p.V740V 0.38 TCGA-E7-A6MD-01 5 86686758 86686758 C T RASA1 3'Flank 0.11 TCGA-E7-A6MD-01 5 96506977 96506977 C T RIOK2 Missense_Mutation p.E238K 0.26 tolerated(0.43) benign(0.018) TCGA-E7-A6MD-01 6 10874771 10874771 G A GCM2 Silent p.F326F 0.33 TCGA-E7-A6MD-01 6 108840996 108840996 G C LACE1 Missense_Mutation p.D434H 0.51 deleterious(0) probably_damaging(0.984) TCGA-E7-A6MD-01 6 11005697 11005697 A G ELOVL2 Missense_Mutation p.Y55H 0.19 deleterious(0.02) possibly_damaging(0.639) TCGA-E7-A6MD-01 6 152737712 152737712 G A SYNE1 Nonsense_Mutation p.Q1954* 0.17 TCGA-E7-A6MD-01 6 152793464 152793464 G C SYNE1 Missense_Mutation p.P479A 0.59 benign(0.001) TCGA-E7-A6MD-01 6 158049446 158049446 T A ZDHHC14 Missense_Mutation p.Y211N 0.19 deleterious(0) probably_damaging(0.997) TCGA-E7-A6MD-01 6 167571251 167571251 C T GPR31 Silent p.L23L 0.30 TCGA-E7-A6MD-01 6 168315992 168315992 C T MLLT4 Missense_Mutation p.S808L 0.12 tolerated(0.12) probably_damaging(0.999) TCGA-E7-A6MD-01 6 17616823 17616823 G T NUP153 Silent p.A1426A 0.36 TCGA-E7-A6MD-01 6 27782430 27782430 C T HIST1H2AJ Missense_Mutation p.R30Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-E7-A6MD-01 6 28251816 28251816 G A PGBD1 Missense_Mutation p.E76K 0.31 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-E7-A6MD-01 6 3104472 3104472 A C RIPK1 Missense_Mutation p.N310T 0.20 tolerated(0.39) benign(0) TCGA-E7-A6MD-01 6 32046826 32046826 G A RNA5SP206 5'Flank 0.48 TCGA-E7-A6MD-01 6 32809395 32809395 G C PSMB8 Missense_Mutation p.L219V 0.40 deleterious(0) possibly_damaging(0.894) TCGA-E7-A6MD-01 6 33289288 33289288 G C DAXX Silent p.L88L 0.16 TCGA-E7-A6MD-01 6 34004017 34004017 C T GRM4 Missense_Mutation p.E624K 0.34 deleterious(0) probably_damaging(0.998) TCGA-E7-A6MD-01 6 35715175 35715175 G A ARMC12 Silent p.L221L 0.44 TCGA-E7-A6MD-01 6 4031860 4031860 C G PRPF4B Missense_Mutation p.Q37E 0.20 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-E7-A6MD-01 6 42946262 42946262 C G PEX6 Silent p.R209R 0.20 TCGA-E7-A6MD-01 6 52883194 52883194 G C ICK Silent p.L199L 0.26 TCGA-E7-A6MD-01 6 56483332 56483332 C G DST Intron 0.21 TCGA-E7-A6MD-01 6 656529 656529 C T HUS1B Missense_Mutation p.R139K 0.24 deleterious(0.04) possibly_damaging(0.589) TCGA-E7-A6MD-01 6 74228818 74228818 T C EEF1A1 Missense_Mutation p.N153S 0.29 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-E7-A6MD-01 6 83848844 83848844 C T DOPEY1 Nonsense_Mutation p.Q1695* 0.20 TCGA-E7-A6MD-01 6 89890156 89890156 G C GABRR1 Missense_Mutation p.S334C 0.30 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 6 90362717 90362717 G A MDN1 Silent p.I5273I 0.45 TCGA-E7-A6MD-01 7 100028200 100028200 C T MEPCE Silent p.L187L 0.12 TCGA-E7-A6MD-01 7 100875904 100875904 C T CLDN15 Missense_Mutation p.D188N 0.50 tolerated(0.44) benign(0.003) TCGA-E7-A6MD-01 7 103137012 103137012 C T RELN Missense_Mutation p.E3052K 0.35 deleterious(0.03) benign(0.41) TCGA-E7-A6MD-01 7 104753643 104753643 C T KMT2E Missense_Mutation p.H1814Y 0.24 deleterious_low_confidence(0) benign(0.227) TCGA-E7-A6MD-01 7 106797673 106797673 C G PRKAR2B Missense_Mutation p.R343G 0.37 deleterious(0) possibly_damaging(0.7) TCGA-E7-A6MD-01 7 121678866 121678866 G A PTPRZ1 Missense_Mutation p.E1809K 0.30 deleterious(0.03) benign(0.013) TCGA-E7-A6MD-01 7 129394931 129394931 G A NRF1 Silent p.Q474Q 0.38 TCGA-E7-A6MD-01 7 138255724 138255724 T C TRIM24 Silent p.S618S 0.32 TCGA-E7-A6MD-01 7 138958753 138958753 G T UBN2 Missense_Mutation p.D636Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-E7-A6MD-01 7 138958776 138958776 G A UBN2 Silent p.E643E 0.14 TCGA-E7-A6MD-01 7 138958780 138958780 G A UBN2 Missense_Mutation p.E645K 0.12 deleterious(0.05) probably_damaging(0.987) TCGA-E7-A6MD-01 7 150269905 150269905 G C GIMAP4 Missense_Mutation p.E249D 0.43 deleterious(0.03) probably_damaging(0.958) TCGA-E7-A6MD-01 7 150742300 150742300 G T ABCB8 Missense_Mutation p.G674V 0.21 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 7 151900091 151900091 G A KMT2C Silent p.S1340S 0.22 TCGA-E7-A6MD-01 7 155090349 155090349 G C INSIG1 Silent p.V118V 0.12 TCGA-E7-A6MD-01 7 21744200 21744200 C G DNAH11 Missense_Mutation p.S2148C 0.21 benign(0.043) TCGA-E7-A6MD-01 7 26411509 26411509 C T SNX10 Missense_Mutation p.S127L 0.14 tolerated(0.19) benign(0.004) TCGA-E7-A6MD-01 7 27185137 27185137 G A HOXA6 3'UTR 0.42 TCGA-E7-A6MD-01 7 31377826 31377826 G C NEUROD6 3'UTR 0.13 TCGA-E7-A6MD-01 7 34182956 34182956 T A BMPER Silent p.P620P 0.22 TCGA-E7-A6MD-01 7 35288353 35288353 G C TBX20 Missense_Mutation p.R161G 0.19 deleterious(0) probably_damaging(1) TCGA-E7-A6MD-01 7 43927087 43927087 G A URGCP Intron 0.51 TCGA-E7-A6MD-01 7 64167386 64167386 A T ZNF107 Missense_Mutation p.K235M 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-E7-A6MD-01 7 75177066 75177066 C G HIP1 Missense_Mutation p.E818Q 0.18 deleterious(0.02) benign(0.152) TCGA-E7-A6MD-01 7 81714153 81714153 C T CACNA2D1 Missense_Mutation p.R197H 0.32 tolerated(0.12) probably_damaging(0.931) TCGA-E7-A6MD-01 7 82545972 82545972 G T PCLO Missense_Mutation p.S3777Y 0.06 unknown(0) TCGA-E7-A6MD-01 7 87811373 87811373 C T ADAM22 Intron 0.19 TCGA-E7-A6MD-01 7 87856238 87856238 G C SRI 5'UTR 0.20 TCGA-E7-A6MD-01 7 88965874 88965874 C T ZNF804B Missense_Mutation p.S1193L 0.26 tolerated(0.05) probably_damaging(0.949) TCGA-E7-A6MD-01 7 92732510 92732510 C G SAMD9 Silent p.L967L 0.26 TCGA-E7-A6MD-01 7 92825209 92825209 C G HEPACAM2 Missense_Mutation p.E403Q 0.22 deleterious(0) probably_damaging(0.962) TCGA-E7-A6MD-01 7 98546198 98546198 C G TRRAP Missense_Mutation p.P1553A 0.36 probably_damaging(0.936) TCGA-E7-A6MD-01 8 104427720 104427720 G A DCAF13 Missense_Mutation p.E168K 0.49 deleterious(0.04) possibly_damaging(0.481) TCGA-E7-A6MD-01 8 110424514 110424514 G A PKHD1L1 Silent p.Q702Q 0.07 TCGA-E7-A6MD-01 8 14022107 14022107 C T SGCZ Missense_Mutation p.E177K 0.28 deleterious(0.03) benign(0.004) TCGA-E7-A6MD-01 8 141297808 141297808 A C TRAPPC9 Missense_Mutation p.F725C 0.17 deleterious(0) probably_damaging(0.994) TCGA-E7-A6MD-01 8 142432241 142432241 C T PTP4A3 5'UTR 0.17 TCGA-E7-A6MD-01 8 142446102 142446102 T A PTP4A3 3'Flank 0.38 TCGA-E7-A6MD-01 8 144658261 144658261 C G NAPRT1 Missense_Mutation p.R365P 0.35 deleterious(0.02) benign(0.015) TCGA-E7-A6MD-01 8 145608422 145608422 G C ADCK5 Missense_Mutation p.R86P 0.29 deleterious(0) possibly_damaging(0.474) TCGA-E7-A6MD-01 8 145652289 145652289 C T VPS28 Intron 0.44 TCGA-E7-A6MD-01 8 23217697 23217697 G A LOXL2 Missense_Mutation p.T146I 0.25 deleterious(0) possibly_damaging(0.598) TCGA-E7-A6MD-01 8 30706589 30706589 A T TEX15 5'UTR 0.33 TCGA-E7-A6MD-01 8 42171858 42171885 GAAGAGTGAGGTGGACATTGTTGTTAGC - IKBKB Frame_Shift_Del p.S239Tfs*2 0.11 TCGA-E7-A6MD-01 8 59872529 59872529 C A TOX Silent p.P47P 0.08 TCGA-E7-A6MD-01 8 73979456 73979456 G C SBSPON 3'UTR 0.67 TCGA-E7-A6MD-01 8 82627265 82627265 C T ZFAND1 Missense_Mutation p.V75M 0.39 tolerated(0.22) benign(0.2) TCGA-E7-A6MD-01 9 117099426 117099426 C T AKNA Missense_Mutation p.E1410K 0.35 tolerated(0.52) benign(0.041) TCGA-E7-A6MD-01 9 125424129 125424129 C T OR1L1 Silent p.I45I 0.48 TCGA-E7-A6MD-01 9 129851398 129851398 C G ANGPTL2 Missense_Mutation p.Q434H 0.24 tolerated(0.56) benign(0.037) TCGA-E7-A6MD-01 9 129870588 129870588 G C ANGPTL2 Silent p.L141L 0.18 TCGA-E7-A6MD-01 9 130476210 130476210 G A PTRH1 3'UTR 0.39 TCGA-E7-A6MD-01 9 130482644 130482644 C G TTC16 Missense_Mutation p.F209L 0.14 tolerated(1) benign(0) TCGA-E7-A6MD-01 9 130911905 130911905 G A LCN2 Missense_Mutation p.S34N 0.54 tolerated(0.32) benign(0.004) TCGA-E7-A6MD-01 9 131731764 131731764 C T NUP188 Nonsense_Mutation p.Q295* 0.23 TCGA-E7-A6MD-01 9 131763856 131763856 G C NUP188 Missense_Mutation p.E1298Q 0.33 tolerated(0.24) benign(0.026) TCGA-E7-A6MD-01 9 131764164 131764164 G T NUP188 Missense_Mutation p.G1349V 0.41 deleterious(0.01) probably_damaging(1) TCGA-E7-A6MD-01 9 131765167 131765167 G C NUP188 Silent p.L1403L 0.48 TCGA-E7-A6MD-01 9 131765610 131765610 G A NUP188 Silent p.V1437V 0.52 TCGA-E7-A6MD-01 9 133506166 133506166 G A FUBP3 Silent p.E423E 0.36 TCGA-E7-A6MD-01 9 136198878 136198878 G A SURF6 Missense_Mutation p.R305C 0.31 deleterious(0) possibly_damaging(0.898) TCGA-E7-A6MD-01 9 136216479 136216479 G A RPL7A Silent p.Q66Q 0.44 TCGA-E7-A6MD-01 9 139815502 139815502 G C TRAF2 Missense_Mutation p.E325Q 0.20 deleterious(0) benign(0.064) TCGA-E7-A6MD-01 9 140139595 140139595 G A FAM166A Nonsense_Mutation p.Q200* 0.47 TCGA-E7-A6MD-01 9 140139823 140139823 G C FAM166A Missense_Mutation p.P153R 0.43 deleterious(0) probably_damaging(0.939) TCGA-E7-A6MD-01 9 16552643 16552643 C T BNC2 Missense_Mutation p.R185Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-E7-A6MD-01 9 2077687 2077687 C G SMARCA2 Missense_Mutation p.Q699E 0.40 benign(0.042) TCGA-E7-A6MD-01 9 26905501 26905501 C T PLAA 3'UTR 0.10 TCGA-E7-A6MD-01 9 4544644 4544644 G C SLC1A1 Missense_Mutation p.E57Q 0.48 deleterious(0) probably_damaging(0.927) TCGA-E7-A6MD-01 9 86616674 86616674 C T RMI1 Missense_Mutation p.T258I 0.51 tolerated(0.32) benign(0) TCGA-E7-A6MD-01 9 90262265 90262265 G C DAPK1 Missense_Mutation p.D426H 0.27 tolerated(0.13) benign(0.002) TCGA-E7-A6MD-01 9 96827082 96827082 G A PTPDC1 Missense_Mutation p.E21K 0.41 tolerated(0.91) benign(0.016) TCGA-E7-A6MD-01 9 97863915 97863915 C A FANCC 3'UTR 0.36 TCGA-E7-A6MD-01 9 99017208 99017208 G C HSD17B3 Silent p.L73L 0.19 TCGA-E7-A6MD-01 X 100880050 100880050 G A ARMCX3 Silent p.L27L 0.64 TCGA-E7-A6MD-01 X 107301401 107301401 C T VSIG1 Silent p.F61F 0.60 TCGA-E7-A6MD-01 X 123210187 123210187 C T STAG2 Nonsense_Mutation p.Q847* 0.59 TCGA-E7-A6MD-01 X 128975964 128975964 G C ZDHHC9 5'UTR 0.28 TCGA-E7-A6MD-01 X 135431843 135431843 C G GPR112 Missense_Mutation p.S1993C 0.30 deleterious(0) possibly_damaging(0.839) TCGA-E7-A6MD-01 X 13681434 13681434 G C TCEANC Missense_Mutation p.L299F 0.41 deleterious(0) probably_damaging(0.999) TCGA-E7-A6MD-01 X 13773267 13773267 C G OFD1 Intron 0.23 TCGA-E7-A6MD-01 X 140785773 140785773 G A SPANXD Missense_Mutation p.S48L 0.21 tolerated_low_confidence(0.27) probably_damaging(0.992) TCGA-E7-A6MD-01 X 153135552 153135552 G T L1CAM Nonsense_Mutation p.S317* 0.55 TCGA-E7-A6MD-01 X 26213150 26213150 T A MAGEB6 Missense_Mutation p.I396K 0.67 tolerated(0.72) benign(0.037) TCGA-E7-A6MD-01 X 44966653 44966653 A T KDM6A Splice_Site p.X1293_splice 0.65 TCGA-E7-A6MD-01 X 48652418 48652418 C G GATA1 Silent p.L363L 0.47 TCGA-E7-A6MD-01 X 53117188 53117188 C T TSPYL2 3'UTR 0.30 TCGA-E7-A6MD-01 X 67283764 67283764 C A OPHN1 Missense_Mutation p.G697V 0.67 tolerated(0.29) benign(0.001) TCGA-E7-A6MD-01 X 68836394 68836394 C T EDA Missense_Mutation p.S81L 0.29 tolerated_low_confidence(0.11) unknown(0) TCGA-E7-A6MD-01 X 8565138 8565138 C - KAL1 Frame_Shift_Del p.V160* 0.38 TCGA-E7-A6MD-01 X 96192269 96192269 A T DIAPH2 Missense_Mutation p.Q376L 0.68 deleterious(0) unknown(0) TCGA-E7-A6ME-01 10 125521576 125521576 A G CPXM2 Missense_Mutation p.V530A 0.56 tolerated(0.7) benign(0.004) TCGA-E7-A6ME-01 10 129903680 129903680 G C MKI67 Missense_Mutation p.Q2142E 0.59 tolerated(0.51) benign(0.042) TCGA-E7-A6ME-01 10 17110770 17110770 C G CUBN Splice_Site p.X876_splice 0.44 TCGA-E7-A6ME-01 11 123813997 123813997 G A OR6T1 Silent p.P183P 0.47 TCGA-E7-A6ME-01 11 5322712 5322712 G A OR51B4 Silent p.P155P 0.39 TCGA-E7-A6ME-01 11 5528897 5528897 C G UBQLN3 Missense_Mutation p.R631P 0.23 tolerated(0.36) benign(0.001) TCGA-E7-A6ME-01 11 55904544 55904544 A G OR8J3 Silent p.S217S 0.38 TCGA-E7-A6ME-01 11 56128305 56128305 C G OR8J1 Missense_Mutation p.P195A 0.35 tolerated(0.45) benign(0.181) TCGA-E7-A6ME-01 11 59604745 59604745 T A GIF Missense_Mutation p.K258M 0.38 deleterious(0.03) possibly_damaging(0.575) TCGA-E7-A6ME-01 11 62294023 62294023 A C AHNAK Missense_Mutation p.I2622M 0.34 possibly_damaging(0.726) TCGA-E7-A6ME-01 11 64360260 64360260 G A SLC22A12 Missense_Mutation p.V138M 0.35 deleterious(0.03) probably_damaging(0.939) TCGA-E7-A6ME-01 11 67177161 67177161 C T TBC1D10C Missense_Mutation p.P426L 0.65 tolerated(0.1) benign(0.002) TCGA-E7-A6ME-01 12 100732958 100732958 T G SCYL2 3'UTR 0.40 TCGA-E7-A6ME-01 12 106824070 106824070 G C POLR3B Missense_Mutation p.R428T 0.36 deleterious(0) probably_damaging(0.994) TCGA-E7-A6ME-01 12 15095625 15095625 T C ARHGDIB Missense_Mutation p.Y146C 0.07 deleterious(0) probably_damaging(1) TCGA-E7-A6ME-01 12 2614033 2614033 G A CACNA1C Nonsense_Mutation p.W380* 0.62 TCGA-E7-A6ME-01 12 32793567 32793567 T C FGD4 3'UTR 0.78 TCGA-E7-A6ME-01 12 33031142 33031142 G T PKP2 Silent p.G224G 0.85 TCGA-E7-A6ME-01 12 33579073 33579074 - G SYT10 Frame_Shift_Ins p.R170Pfs*19 0.45 TCGA-E7-A6ME-01 12 49436403 49436403 G - KMT2D Frame_Shift_Del p.S1937Pfs*110 0.34 TCGA-E7-A6ME-01 12 76453937 76453937 T C NAP1L1 Missense_Mutation p.Y110C 0.33 tolerated(0.07) benign(0.151) TCGA-E7-A6ME-01 13 27829576 27829576 A G RPL21 Intron 0.44 TCGA-E7-A6ME-01 13 49281757 49281757 C T CYSLTR2 Silent p.T268T 0.59 TCGA-E7-A6ME-01 13 92101127 92101127 C T GPC5 Silent p.S92S 0.33 TCGA-E7-A6ME-01 14 106967199 106967199 C T IGHV1-46 Missense_Mutation p.M67I 0.59 tolerated(0.93) benign(0.026) TCGA-E7-A6ME-01 14 20248660 20248660 A G OR4M1 Missense_Mutation p.Y60C 0.43 deleterious(0) probably_damaging(0.999) TCGA-E7-A6ME-01 14 21624033 21624033 C T OR5AU1 Missense_Mutation p.R51K 0.32 tolerated(0.91) benign(0) TCGA-E7-A6ME-01 14 59113771 59113771 C G DACT1 Silent p.V810V 0.60 TCGA-E7-A6ME-01 14 94563235 94563235 G A IFI27L1 Intron 0.45 TCGA-E7-A6ME-01 15 23299774 23299775 - A HERC2P2 RNA 0.20 TCGA-E7-A6ME-01 15 41864688 41864688 G A TYRO3 Missense_Mutation p.V601I 0.32 deleterious(0) possibly_damaging(0.783) TCGA-E7-A6ME-01 15 42807516 42807516 A G SNAP23 Missense_Mutation p.N77S 0.24 tolerated(0.52) benign(0.003) TCGA-E7-A6ME-01 16 19628106 19628106 G A C16orf62 Silent p.Q489Q 0.46 TCGA-E7-A6ME-01 16 24873949 24873949 G A SLC5A11 Missense_Mutation p.V55M 0.06 deleterious(0) probably_damaging(0.96) TCGA-E7-A6ME-01 16 27784423 27784423 T C KIAA0556 Missense_Mutation p.I1401T 0.67 deleterious(0) probably_damaging(0.962) TCGA-E7-A6ME-01 16 3830776 3830776 C A CREBBP Nonsense_Mutation p.E594* 0.59 TCGA-E7-A6ME-01 16 51173190 51173190 G C SALL1 Missense_Mutation p.I981M 0.36 deleterious(0.02) benign(0.322) TCGA-E7-A6ME-01 16 68405224 68405224 C T SMPD3 Silent p.G287G 0.32 TCGA-E7-A6ME-01 16 77323240 77323240 G T ADAMTS18 Silent p.S1157S 0.28 TCGA-E7-A6ME-01 16 87636931 87636931 C T JPH3 Missense_Mutation p.T60M 0.48 deleterious(0.01) possibly_damaging(0.549) TCGA-E7-A6ME-01 17 10204954 10204954 C T MYH13 Missense_Mutation p.E1912K 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-E7-A6ME-01 17 1637420 1637420 C A WDR81 Missense_Mutation p.R1697S 0.38 deleterious(0) possibly_damaging(0.853) TCGA-E7-A6ME-01 17 29185273 29185273 A G ATAD5 Missense_Mutation p.Y963C 0.40 deleterious(0) benign(0.271) TCGA-E7-A6ME-01 17 40148407 40148407 C T DNAJC7 Silent p.L109L 0.37 TCGA-E7-A6ME-01 17 40717696 40717696 A G COASY Missense_Mutation p.E531G 0.37 tolerated(0.08) benign(0.065) TCGA-E7-A6ME-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.61 deleterious(0) probably_damaging(0.994) TCGA-E7-A6ME-01 17 7809948 7809948 C G CHD3 Missense_Mutation p.P1538R 0.59 probably_damaging(0.942) TCGA-E7-A6ME-01 17 79661951 79661951 C T HGS Intron 0.41 TCGA-E7-A6ME-01 17 80016247 80016247 G C DUS1L Missense_Mutation p.R418G 0.41 deleterious(0.02) benign(0.166) TCGA-E7-A6ME-01 18 31432871 31432871 C G NOL4 Missense_Mutation p.E618Q 0.82 deleterious(0.02) probably_damaging(0.998) TCGA-E7-A6ME-01 18 346304 346304 T C COLEC12 Missense_Mutation p.I440V 0.44 tolerated(0.11) possibly_damaging(0.456) TCGA-E7-A6ME-01 18 77107902 77107902 G C ATP9B Missense_Mutation p.G939R 0.35 deleterious(0) probably_damaging(0.999) TCGA-E7-A6ME-01 19 11942797 11942797 G A ZNF440 Missense_Mutation p.R269K 0.35 tolerated(0.13) benign(0.269) TCGA-E7-A6ME-01 19 14736389 14736389 C G EMR3 Missense_Mutation p.W612S 0.35 deleterious(0) probably_damaging(0.998) TCGA-E7-A6ME-01 19 17441651 17441651 G A ANO8 Missense_Mutation p.R327C 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A6ME-01 19 20308061 20308061 C T ZNF486 Missense_Mutation p.P181L 0.39 tolerated(0.23) benign(0.011) TCGA-E7-A6ME-01 19 35862375 35862375 C A GPR42 Silent p.V38V 0.23 TCGA-E7-A6ME-01 19 39926569 39926569 C T RPS16 5'UTR 0.37 TCGA-E7-A6ME-01 19 44611289 44611289 C T ZNF224 Missense_Mutation p.R326C 0.13 tolerated(0.1) possibly_damaging(0.892) TCGA-E7-A6ME-01 19 50462142 50462142 C T SIGLEC11 Missense_Mutation p.G374E 0.51 tolerated(0.44) benign(0.011) TCGA-E7-A6ME-01 19 54290986 54290986 T G MIR371A RNA 0.35 TCGA-E7-A6ME-01 19 54308642 54308642 T C NLRP12 Missense_Mutation p.N769S 0.45 tolerated(0.22) benign(0.437) TCGA-E7-A6ME-01 19 54724566 54724566 G A LILRB3 Missense_Mutation p.P364S 0.21 deleterious(0.04) benign(0.079) TCGA-E7-A6ME-01 19 54744318 54744318 G A LILRA6 Missense_Mutation p.P364S 0.23 tolerated(0.08) possibly_damaging(0.664) TCGA-E7-A6ME-01 19 9057103 9057103 C G MUC16 Missense_Mutation p.E10115Q 0.56 benign(0.02) TCGA-E7-A6ME-01 1 11148180 11148180 C T EXOSC10 Silent p.Q278Q 0.31 TCGA-E7-A6ME-01 1 144882629 144882629 C T PDE4DIP Silent p.G1130G 0.31 TCGA-E7-A6ME-01 1 152280892 152280892 G A FLG Missense_Mutation p.S2157L 0.24 benign(0.32) TCGA-E7-A6ME-01 1 154164605 154164605 T A TPM3 5'UTR 0.44 TCGA-E7-A6ME-01 1 158576965 158576965 C G OR10Z1 Missense_Mutation p.T246R 0.56 deleterious(0) possibly_damaging(0.762) TCGA-E7-A6ME-01 1 158669737 158669737 G - OR6K2 Frame_Shift_Del p.R236Afs*21 0.40 TCGA-E7-A6ME-01 1 158735908 158735908 A T OR6N1 Missense_Mutation p.C189S 0.26 deleterious(0) probably_damaging(1) TCGA-E7-A6ME-01 1 159038364 159038364 A G AIM2 Silent p.H130H 0.47 TCGA-E7-A6ME-01 1 182357738 182357738 C G GLUL Silent p.R45R 0.59 TCGA-E7-A6ME-01 1 186107004 186107004 C A HMCN1 Silent p.T4608T 0.33 TCGA-E7-A6ME-01 1 196436900 196436900 A T KCNT2 Nonsense_Mutation p.L159* 0.59 TCGA-E7-A6ME-01 1 197404691 197404691 C T CRB1 Missense_Mutation p.T1233I 0.38 tolerated(0.78) benign(0.004) TCGA-E7-A6ME-01 1 201965365 201965365 G A RNPEP Silent p.K276K 0.24 TCGA-E7-A6ME-01 1 204957960 204957960 G T NFASC Intron 0.32 TCGA-E7-A6ME-01 1 207818618 207818618 C A CR1L Silent p.R14R 0.33 TCGA-E7-A6ME-01 1 212798536 212798536 A G FAM71A Missense_Mutation p.K106R 0.65 tolerated(0.09) benign(0.021) TCGA-E7-A6ME-01 1 214819612 214819612 C G CENPF Silent p.L2233L 0.24 TCGA-E7-A6ME-01 1 215953234 215953234 T C USH2A Silent p.K3630K 0.58 TCGA-E7-A6ME-01 1 231155775 231155775 C A FAM89A Missense_Mutation p.S130I 0.22 deleterious(0) possibly_damaging(0.845) TCGA-E7-A6ME-01 1 231360011 231360011 T C C1orf131 3'UTR 0.57 TCGA-E7-A6ME-01 1 235969280 235969280 T C LYST Silent p.L1052L 0.27 TCGA-E7-A6ME-01 1 248458092 248458092 G T OR2T12 Missense_Mutation p.H263Q 0.06 deleterious(0.02) possibly_damaging(0.449) TCGA-E7-A6ME-01 1 248737700 248737700 A G OR2T34 Missense_Mutation p.L120P 0.12 deleterious(0) probably_damaging(0.936) TCGA-E7-A6ME-01 1 40981315 40981315 C G EXO5 Missense_Mutation p.P367A 0.50 tolerated_low_confidence(0.07) benign(0.079) TCGA-E7-A6ME-01 1 6579504 6579504 C T NOL9 3'Flank 0.19 TCGA-E7-A6ME-01 20 23420974 23420974 C G CSTL1 Missense_Mutation p.H24D 0.53 deleterious(0.01) benign(0.201) TCGA-E7-A6ME-01 20 2641345 2641345 C G IDH3B Missense_Mutation p.E177Q 0.54 tolerated(0.38) possibly_damaging(0.841) TCGA-E7-A6ME-01 20 36845697 36845697 C T KIAA1755 Silent p.T953T 0.36 TCGA-E7-A6ME-01 20 40735448 40735448 C G PTPRT Missense_Mutation p.R1123T 0.53 deleterious(0) probably_damaging(0.999) TCGA-E7-A6ME-01 20 44313472 44313472 T C WFDC10B Silent p.L89L 0.26 TCGA-E7-A6ME-01 20 47682761 47682761 C T CSE1L Silent p.A87A 0.19 TCGA-E7-A6ME-01 20 8628591 8628591 C G PLCB1 Missense_Mutation p.P170R 0.29 deleterious(0) benign(0.269) TCGA-E7-A6ME-01 21 39087252 39087252 C G KCNJ6 Missense_Mutation p.V70L 0.36 tolerated(0.51) benign(0.203) TCGA-E7-A6ME-01 21 42813764 42813764 G A MX1 Silent p.Q284Q 0.34 TCGA-E7-A6ME-01 21 42813770 42813770 C A MX1 Silent p.I286I 0.44 TCGA-E7-A6ME-01 21 44182266 44182266 G T PDE9A Missense_Mutation p.A387S 0.42 deleterious(0.03) probably_damaging(0.994) TCGA-E7-A6ME-01 21 44513300 44513302 CCA - U2AF1 In_Frame_Del p.G223del 0.50 TCGA-E7-A6ME-01 21 47544811 47544811 C A COL6A2 Missense_Mutation p.P583T 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-E7-A6ME-01 22 36708192 36708192 C A MYH9 Nonsense_Mutation p.E544* 0.65 TCGA-E7-A6ME-01 22 36708193 36708193 C A MYH9 Silent p.V543V 0.66 TCGA-E7-A6ME-01 22 37334339 37334339 C T CSF2RB Missense_Mutation p.P830L 0.55 tolerated(0.06) benign(0.02) TCGA-E7-A6ME-01 22 42461823 42461823 G A NAGA Silent p.L226L 1.00 TCGA-E7-A6ME-01 22 50899988 50899988 G C SBF1 Missense_Mutation p.R935G 0.78 deleterious(0) probably_damaging(0.999) TCGA-E7-A6ME-01 2 105900854 105900854 A G TGFBRAP1 Missense_Mutation p.V347A 0.09 tolerated(0.67) benign(0.002) TCGA-E7-A6ME-01 2 119735424 119735424 G A MARCO Missense_Mutation p.E227K 0.45 tolerated(0.06) probably_damaging(0.973) TCGA-E7-A6ME-01 2 131520886 131520886 G A AMER3 Missense_Mutation p.R414Q 0.33 tolerated(0.1) probably_damaging(0.94) TCGA-E7-A6ME-01 2 163374403 163374403 T A KCNH7 Missense_Mutation p.Q243H 0.43 tolerated(0.19) benign(0.005) TCGA-E7-A6ME-01 2 225729702 225729702 T C DOCK10 Missense_Mutation p.M454V 0.28 deleterious(0) probably_damaging(0.956) TCGA-E7-A6ME-01 2 227662367 227662367 G T IRS1 Missense_Mutation p.A363D 0.47 tolerated(0.1) benign(0.014) TCGA-E7-A6ME-01 2 238820339 238820339 C T RAMP1 Missense_Mutation p.P121S 0.29 deleterious(0.04) possibly_damaging(0.772) TCGA-E7-A6ME-01 2 30142901 30142901 G A ALK Missense_Mutation p.R209C 0.77 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-E7-A6ME-01 2 65495908 65495908 T C ACTR2 3'UTR 0.25 TCGA-E7-A6ME-01 2 74074838 74074838 G T STAMBP Missense_Mutation p.D234Y 0.15 deleterious(0) possibly_damaging(0.907) TCGA-E7-A6ME-01 2 80772155 80772155 T C CTNNA2 Silent p.L447L 0.37 TCGA-E7-A6ME-01 2 99413824 99413824 C G KIAA1211L Missense_Mutation p.E865Q 0.31 deleterious(0) probably_damaging(0.957) TCGA-E7-A6ME-01 3 147128793 147128793 C A ZIC1 Silent p.G298G 0.34 TCGA-E7-A6ME-01 3 15493043 15493043 T C COLQ 3'UTR 0.45 TCGA-E7-A6ME-01 3 36547287 36547287 A G STAC Missense_Mutation p.Y294C 0.48 deleterious(0) probably_damaging(0.984) TCGA-E7-A6ME-01 3 49940131 49940131 T C MST1R Silent p.P304P 0.38 TCGA-E7-A6ME-01 3 9952719 9952719 G A IL17RE Missense_Mutation p.D325N 0.44 tolerated(0.15) benign(0.007) TCGA-E7-A6ME-01 4 1231903 1231903 G A CTBP1 Intron 0.38 TCGA-E7-A6ME-01 4 140265457 140265457 C T NAA15 Nonsense_Mutation p.Q219* 0.15 TCGA-E7-A6ME-01 4 167833839 167833839 A G SPOCK3 Missense_Mutation p.C139R 0.33 deleterious(0) probably_damaging(0.982) TCGA-E7-A6ME-01 4 57797925 57797925 A G REST Silent p.E967E 0.44 TCGA-E7-A6ME-01 5 118264397 118264397 C T DTWD2 Silent p.R144R 0.64 TCGA-E7-A6ME-01 5 140857475 140857475 G A PCDHGC3 Missense_Mutation p.A598T 0.67 deleterious(0.02) possibly_damaging(0.529) TCGA-E7-A6ME-01 5 167625880 167625880 G A TENM2 Missense_Mutation p.G975S 0.80 deleterious(0) possibly_damaging(0.687) TCGA-E7-A6ME-01 5 180043369 180043370 - G FLT4 Frame_Shift_Ins p.S1073Qfs*12 0.36 TCGA-E7-A6ME-01 5 35955945 35955945 A G UGT3A1 Missense_Mutation p.F366S 0.52 deleterious(0.03) possibly_damaging(0.817) TCGA-E7-A6ME-01 5 3599509 3599509 C T IRX1 Silent p.H149H 0.61 TCGA-E7-A6ME-01 5 36137544 36137544 C A LMBRD2 Splice_Site p.X123_splice 0.35 TCGA-E7-A6ME-01 5 37381716 37381716 G A WDR70 Missense_Mutation p.R35H 0.40 deleterious(0) probably_damaging(0.98) TCGA-E7-A6ME-01 5 42718755 42718755 C T GHR Silent p.G382G 0.44 TCGA-E7-A6ME-01 6 117715368 117715368 A G ROS1 Missense_Mutation p.I374T 0.13 tolerated(0.12) benign(0.002) TCGA-E7-A6ME-01 6 152623078 152623078 C G SYNE1 Missense_Mutation p.G5823R 0.39 benign(0.367) TCGA-E7-A6ME-01 6 24716427 24716427 T C C6orf62 Silent p.L85L 0.31 TCGA-E7-A6ME-01 6 26032138 26032138 C G HIST1H3B Missense_Mutation p.E51Q 0.39 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-E7-A6ME-01 6 26189250 26189273 GACGCTTGGCGCCACCCTTACCTA - HIST1H4D In_Frame_Del p.L11_R18del 0.32 TCGA-E7-A6ME-01 6 30653405 30653405 C - PPP1R18 Frame_Shift_Del p.D131Ifs*14 0.29 TCGA-E7-A6ME-01 6 32407797 32407797 T C HLA-DRA Missense_Mutation p.W24R 0.45 tolerated(0.52) benign(0.007) TCGA-E7-A6ME-01 6 33283600 33283600 C T ZBTB22 Missense_Mutation p.S365N 0.44 tolerated(0.07) benign(0.004) TCGA-E7-A6ME-01 7 100732273 100732273 C G TRIM56 Missense_Mutation p.S560R 0.22 tolerated(0.05) benign(0.091) TCGA-E7-A6ME-01 7 102098218 102098218 C T ALKBH4 Missense_Mutation p.E178K 0.44 deleterious(0) probably_damaging(0.998) TCGA-E7-A6ME-01 7 116544264 116544264 G - CAPZA2 Frame_Shift_Del p.G85Efs*17 0.45 TCGA-E7-A6ME-01 7 140373345 140373345 G T ADCK2 Missense_Mutation p.C72F 0.17 tolerated(0.61) benign(0.002) TCGA-E7-A6ME-01 7 21550876 21550876 G A SP4 Missense_Mutation p.E782K 0.43 deleterious_low_confidence(0.02) benign(0.056) TCGA-E7-A6ME-01 7 72413209 72413209 A G POM121 Missense_Mutation p.T628A 0.09 tolerated(0.33) benign(0.01) TCGA-E7-A6ME-01 7 73646486 73646486 C T RFC2 Missense_Mutation p.G339S 0.23 tolerated(0.08) benign(0.21) TCGA-E7-A6ME-01 7 95822369 95822369 C A SLC25A13 Missense_Mutation p.V199L 0.45 deleterious(0.04) benign(0.26) TCGA-E7-A6ME-01 8 103236281 103236281 A G RRM2B Silent p.S181S 0.42 TCGA-E7-A6ME-01 8 140630790 140630790 G A KCNK9 Missense_Mutation p.P279L 0.43 tolerated(0.25) benign(0) TCGA-E7-A6ME-01 8 14412241 14412241 C T SGCZ Silent p.V78V 0.34 TCGA-E7-A6ME-01 8 145012848 145012848 C T PLEC Missense_Mutation p.R179H 0.37 unknown(0) TCGA-E7-A6ME-01 8 22423915 22423915 G A SORBS3 Silent p.R336R 0.50 TCGA-E7-A6ME-01 8 51664597 51664597 G A SNTG1 Missense_Mutation p.G441S 0.34 deleterious(0) benign(0.383) TCGA-E7-A6ME-01 8 53540692 53540692 G T RB1CC1 Missense_Mutation p.D1512E 0.35 deleterious(0) probably_damaging(0.921) TCGA-E7-A6ME-01 8 72951100 72951100 C T TRPA1 Silent p.T765T 0.35 TCGA-E7-A6ME-01 8 86050456 86050456 G C LRRCC1 Missense_Mutation p.E894Q 0.41 deleterious(0.01) possibly_damaging(0.756) TCGA-E7-A6ME-01 9 101014156 101014156 C A TBC1D2 Missense_Mutation p.R141L 0.27 deleterious(0.02) probably_damaging(1) TCGA-E7-A6ME-01 9 116136446 116136446 G A HDHD3 Silent p.Y63Y 0.42 TCGA-E7-A6ME-01 9 116942 116942 G A FOXD4 Missense_Mutation p.S393L 0.08 deleterious(0) benign(0.028) TCGA-E7-A6ME-01 9 14812807 14812807 T C FREM1 Intron 0.51 TCGA-E7-A6ME-01 9 33120514 33120514 T C B4GALT1 Missense_Mutation p.S247G 0.41 deleterious(0.02) probably_damaging(0.985) TCGA-E7-A6ME-01 9 35722213 35722213 T C TLN1 Missense_Mutation p.K284R 0.24 tolerated(0.39) benign(0.096) TCGA-E7-A6ME-01 9 36607624 36607624 T C MELK Missense_Mutation p.L207P 0.37 deleterious(0) probably_damaging(0.999) TCGA-E7-A6ME-01 X 123179174 123179174 C A STAG2 Missense_Mutation p.S208Y 0.80 deleterious(0) probably_damaging(0.979) TCGA-E7-A6ME-01 X 129281528 129281528 G A AIFM1 Missense_Mutation p.S182L 0.82 deleterious(0) possibly_damaging(0.788) TCGA-E7-A6ME-01 X 144904563 144904563 G T SLITRK2 Missense_Mutation p.G207V 0.79 deleterious(0.05) probably_damaging(0.917) TCGA-E7-A6ME-01 X 144904564 144904564 G T SLITRK2 Silent p.G207G 0.79 TCGA-E7-A6ME-01 X 30268920 30268920 G T MAGEB1 Missense_Mutation p.V104F 0.79 tolerated(0.69) benign(0.174) TCGA-E7-A6ME-01 X 34148722 34148722 C G FAM47A Silent p.P558P 0.79 TCGA-E7-A6ME-01 X 38158326 38158326 T C RPGR Silent p.E376E 0.81 TCGA-E7-A6ME-01 X 44941859 44941860 AG - KDM6A Frame_Shift_Del p.D1062* 0.46 TCGA-E7-A6MF-01 10 12856195 12856195 C G CAMK1D Missense_Mutation p.L215V 0.46 deleterious(0.02) possibly_damaging(0.749) TCGA-E7-A6MF-01 11 10580479 10580479 G C LYVE1 3'UTR 0.57 TCGA-E7-A6MF-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.39 deleterious(0.02) benign(0.046) TCGA-E7-A6MF-01 12 110290387 110290387 C A GLTP Missense_Mutation p.M201I 0.50 deleterious(0.04) benign(0.068) TCGA-E7-A6MF-01 12 16189209 16189209 C A DERA Missense_Mutation p.S265Y 0.44 deleterious(0) possibly_damaging(0.797) TCGA-E7-A6MF-01 12 56815753 56815753 G A TIMELESS Nonsense_Mutation p.R858* 0.44 TCGA-E7-A6MF-01 12 6677038 6677038 C T NOP2 Missense_Mutation p.R16Q 0.48 deleterious(0) probably_damaging(0.998) TCGA-E7-A6MF-01 14 36989255 36989255 C T NKX2-1 Intron 0.57 TCGA-E7-A6MF-01 15 72311383 72311383 C A MYO9A Missense_Mutation p.E384D 0.29 deleterious(0) probably_damaging(0.999) TCGA-E7-A6MF-01 15 72699449 72699449 C T TMEM202 Silent p.L170L 0.52 TCGA-E7-A6MF-01 15 76634070 76634070 C A ISL2 Missense_Mutation p.S325Y 0.50 deleterious(0) possibly_damaging(0.84) TCGA-E7-A6MF-01 17 2868929 2868929 C T RAP1GAP2 Silent p.V196V 0.27 TCGA-E7-A6MF-01 17 3629245 3629245 G C GSG2 Missense_Mutation p.K672N 0.38 deleterious(0.04) benign(0.011) TCGA-E7-A6MF-01 17 62796727 62796727 G A PLEKHM1P RNA 0.60 TCGA-E7-A6MF-01 17 8014679 8014679 C G ALOXE3 Missense_Mutation p.E451Q 0.41 tolerated(0.3) possibly_damaging(0.615) TCGA-E7-A6MF-01 18 60985968 60985968 G C BCL2 5'UTR 0.37 TCGA-E7-A6MF-01 19 10904473 10904473 C T DNM2 Missense_Mutation p.S357F 0.06 deleterious(0.02) probably_damaging(0.977) TCGA-E7-A6MF-01 19 36572381 36572381 C T WDR62 Missense_Mutation p.S427F 0.44 deleterious(0) probably_damaging(0.979) TCGA-E7-A6MF-01 19 47673086 47673086 C T SAE1 Silent p.F213F 0.55 TCGA-E7-A6MF-01 19 49952744 49952744 C A PIH1D1 Nonsense_Mutation p.E109* 0.53 TCGA-E7-A6MF-01 1 110587461 110587461 G C STRIP1 Splice_Site p.X429_splice 0.34 TCGA-E7-A6MF-01 1 154115947 154115947 C G NUP210L Silent p.L149L 0.43 TCGA-E7-A6MF-01 1 87814471 87814471 G A LMO4 3'UTR 0.65 TCGA-E7-A6MF-01 20 37518263 37518263 C T PPP1R16B Silent p.V92V 0.43 TCGA-E7-A6MF-01 2 204231719 204231719 G A ABI2 Silent p.Q79Q 0.50 TCGA-E7-A6MF-01 2 207041509 207041509 G C GPR1 Missense_Mutation p.L155V 0.53 tolerated(0.4) benign(0.038) TCGA-E7-A6MF-01 2 234442316 234442316 T G USP40 Missense_Mutation p.Q438P 0.08 tolerated(0.36) benign(0.005) TCGA-E7-A6MF-01 2 37458644 37458644 C G CEBPZ Missense_Mutation p.E23Q 0.38 tolerated_low_confidence(0.15) benign(0.007) TCGA-E7-A6MF-01 3 107447786 107447786 C T BBX Nonsense_Mutation p.Q194* 0.23 TCGA-E7-A6MF-01 3 108279531 108279531 C T KIAA1524 Missense_Mutation p.E598K 0.41 deleterious(0.04) benign(0.198) TCGA-E7-A6MF-01 3 113659084 113659084 C T GRAMD1C Intron 0.45 TCGA-E7-A6MF-01 3 141161503 141161503 C A ZBTB38 Silent p.I91I 0.49 TCGA-E7-A6MF-01 3 141164050 141164050 G A ZBTB38 Silent p.R940R 0.50 TCGA-E7-A6MF-01 3 141164572 141164572 G A ZBTB38 Silent p.Q1114Q 0.47 TCGA-E7-A6MF-01 3 142423357 142423357 G A PLS1 Missense_Mutation p.E520K 0.44 tolerated(1) benign(0.005) TCGA-E7-A6MF-01 3 168834501 168834501 G A MECOM Nonsense_Mutation p.Q264* 0.55 TCGA-E7-A6MF-01 3 189349298 189349298 G A TP63 5'UTR 0.35 TCGA-E7-A6MF-01 3 196541437 196541437 G C PAK2 Missense_Mutation p.E351Q 0.53 deleterious(0.02) probably_damaging(0.972) TCGA-E7-A6MF-01 3 196792614 196792614 G A DLG1 Missense_Mutation p.S755L 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A6MF-01 3 196793620 196793620 G C DLG1 Missense_Mutation p.Q718E 0.41 tolerated(0.08) possibly_damaging(0.458) TCGA-E7-A6MF-01 3 38058110 38058110 G T PLCD1 Silent p.V121V 0.59 TCGA-E7-A6MF-01 4 88394921 88394921 C G SPARCL1 3'UTR 0.54 TCGA-E7-A6MF-01 5 118569088 118569088 C T DMXL1 Nonsense_Mutation p.Q2777* 0.54 TCGA-E7-A6MF-01 5 156456729 156456729 G A HAVCR1 3'UTR 0.43 TCGA-E7-A6MF-01 5 73045770 73045770 G A ARHGEF28 Missense_Mutation p.E48K 0.35 tolerated(0.19) benign(0.01) TCGA-E7-A6MF-01 5 73045779 73045779 G A ARHGEF28 Missense_Mutation p.E51K 0.35 tolerated(0.39) benign(0.002) TCGA-E7-A6MF-01 5 73045782 73045782 G A ARHGEF28 Missense_Mutation p.D52N 0.33 tolerated(0.08) benign(0.014) TCGA-E7-A6MF-01 6 139563740 139563740 C T TXLNB Missense_Mutation p.E660K 0.54 tolerated_low_confidence(0.29) benign(0.002) TCGA-E7-A6MF-01 6 26124773 26124773 C T HIST1H2AC Nonsense_Mutation p.Q105* 0.48 TCGA-E7-A6MF-01 7 36320808 36320808 G A EEPD1 Missense_Mutation p.E339K 0.34 deleterious(0.02) benign(0.056) TCGA-E7-A6MF-01 7 42961464 42961464 C G PSMA2 Missense_Mutation p.E175Q 0.42 deleterious(0.01) possibly_damaging(0.607) TCGA-E7-A6MF-01 7 43664464 43664464 C T STK17A 3'UTR 0.37 TCGA-E7-A6MF-01 7 91695856 91695856 G A AKAP9 Missense_Mutation p.R2109K 0.33 benign(0.094) TCGA-E7-A6MF-01 8 73848439 73848439 G A KCNB2 Silent p.L283L 0.45 TCGA-E7-A6MF-01 9 100892140 100892140 G A CORO2A Silent p.S301S 0.41 TCGA-E7-A6MF-01 9 32431748 32431748 G A ACO1 Silent p.L586L 0.41 TCGA-E7-A6MF-01 X 140983190 140983190 C G MAGEC3 Missense_Mutation p.Q349E 0.97 tolerated(0.05) benign(0.042) TCGA-E7-A6MF-01 X 153296470 153296470 C T MECP2 Missense_Mutation p.R282Q 0.96 tolerated(0.06) probably_damaging(0.996) TCGA-E7-A6MF-01 X 53438752 53438752 C T SMC1A Missense_Mutation p.D405N 1.00 deleterious(0) probably_damaging(0.987) TCGA-E7-A6MF-01 X 53438813 53438813 C G SMC1A Missense_Mutation p.K384N 0.93 deleterious(0.01) probably_damaging(0.944) TCGA-E7-A6MF-01 X 53438987 53438987 C G SMC1A Missense_Mutation p.E357D 0.96 deleterious(0.04) benign(0.192) TCGA-E7-A6MF-01 X 53439089 53439089 C G SMC1A Missense_Mutation p.Q323H 0.92 deleterious(0.01) possibly_damaging(0.82) TCGA-E7-A7DU-01 10 11308601 11308601 G C CELF2 Missense_Mutation p.Q193H 0.56 deleterious(0.03) possibly_damaging(0.834) TCGA-E7-A7DU-01 10 122618238 122618238 G T WDR11 Missense_Mutation p.K94N 0.19 tolerated(0.13) benign(0.179) TCGA-E7-A7DU-01 10 129923878 129923878 G A MKI67 Silent p.P18P 0.41 TCGA-E7-A7DU-01 10 30315090 30315090 C G KIAA1462 Missense_Mutation p.E1329D 0.19 tolerated(0.18) benign(0.134) TCGA-E7-A7DU-01 10 43089800 43089800 G A ZNF33B Silent p.L200L 0.20 TCGA-E7-A7DU-01 10 48390773 48390773 G A RBP3 Silent p.L35L 0.17 TCGA-E7-A7DU-01 10 5790035 5790035 C G FAM208B Missense_Mutation p.P1551A 0.21 deleterious(0.02) benign(0.242) TCGA-E7-A7DU-01 10 74095690 74095690 C G DNAJB12 Splice_Site p.X370_splice 0.42 TCGA-E7-A7DU-01 10 74833581 74833581 C G P4HA1 Missense_Mutation p.Q27H 0.15 tolerated(0.8) benign(0.006) TCGA-E7-A7DU-01 10 76970900 76970900 C T VDAC2 5'UTR 0.19 TCGA-E7-A7DU-01 10 79569372 79569372 G A DLG5 Missense_Mutation p.A1527V 0.20 tolerated(0.05) possibly_damaging(0.802) TCGA-E7-A7DU-01 10 95552644 95552644 G C LGI1 Silent p.S216S 0.17 TCGA-E7-A7DU-01 10 97624562 97624562 C T ENTPD1 Silent p.L436L 0.22 TCGA-E7-A7DU-01 11 105732803 105732803 G A GRIA4 Missense_Mutation p.V181I 0.41 tolerated(0.15) benign(0.397) TCGA-E7-A7DU-01 11 121028927 121028927 G A TECTA Silent p.T1561T 0.48 TCGA-E7-A7DU-01 11 134257515 134257515 G A B3GAT1 Silent p.I13I 0.22 TCGA-E7-A7DU-01 11 1774694 1774694 C G CTSD 3'UTR 0.56 TCGA-E7-A7DU-01 11 5653482 5653482 C G TRIM34 Intron 0.52 TCGA-E7-A7DU-01 11 67198961 67198961 C G RPS6KB2 Silent p.L144L 0.16 TCGA-E7-A7DU-01 11 74705724 74705724 C A NEU3 Missense_Mutation p.L89M 0.25 deleterious(0) probably_damaging(0.974) TCGA-E7-A7DU-01 11 77775222 77775222 G A THRSP Missense_Mutation p.E99K 0.34 tolerated(0.28) benign(0.004) TCGA-E7-A7DU-01 11 78387364 78387364 C G TENM4 Missense_Mutation p.E1777Q 0.64 tolerated(0.11) benign(0.044) TCGA-E7-A7DU-01 11 85396552 85396552 C T CCDC89 Missense_Mutation p.E208K 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-E7-A7DU-01 11 89896183 89896183 C T NAALAD2 Silent p.I352I 0.30 TCGA-E7-A7DU-01 11 9459519 9459519 G A IPO7 Silent p.L829L 0.38 TCGA-E7-A7DU-01 11 9459638 9459638 G A IPO7 Missense_Mutation p.R834K 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-E7-A7DU-01 11 9459655 9459655 G C IPO7 Missense_Mutation p.G840R 0.41 deleterious(0) probably_damaging(0.964) TCGA-E7-A7DU-01 12 112110571 112110571 G A BRAP Missense_Mutation p.A214V 0.17 deleterious(0) probably_damaging(0.991) TCGA-E7-A7DU-01 12 113629186 113629186 G A RITA1 Missense_Mutation p.G125E 0.47 tolerated(1) benign(0) TCGA-E7-A7DU-01 12 113823088 113823088 C T PLBD2 Missense_Mutation p.P429L 0.49 deleterious(0) probably_damaging(1) TCGA-E7-A7DU-01 12 121164874 121164874 C T ACADS Missense_Mutation p.S31F 0.52 tolerated(0.07) benign(0.195) TCGA-E7-A7DU-01 12 122618285 122618285 G A MLXIP Missense_Mutation p.D495N 0.47 tolerated(0.73) benign(0.009) TCGA-E7-A7DU-01 12 124422150 124422150 G A CCDC92 Missense_Mutation p.R151W 0.49 deleterious(0) probably_damaging(1) TCGA-E7-A7DU-01 12 125558471 125558471 C T AACS Silent p.F61F 0.30 TCGA-E7-A7DU-01 12 131359242 131359242 G A RAN Silent p.A133A 0.48 TCGA-E7-A7DU-01 12 1940219 1940219 G T LRTM2 Silent p.V62V 0.23 TCGA-E7-A7DU-01 12 19512471 19512471 C T PLEKHA5 Silent p.F1158F 0.31 TCGA-E7-A7DU-01 12 23687199 23687199 T A SOX5 Missense_Mutation p.D749V 0.27 deleterious(0) probably_damaging(0.917) TCGA-E7-A7DU-01 12 41966991 41966991 G A PDZRN4 Missense_Mutation p.A804T 0.24 tolerated(0.6) benign(0) TCGA-E7-A7DU-01 12 54383132 54383132 C A HOXC10 Missense_Mutation p.Q311K 0.39 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DU-01 12 56749136 56749136 C T STAT2 Splice_Site p.X158_splice 0.27 TCGA-E7-A7DU-01 12 57432242 57432242 C A MYO1A Missense_Mutation p.A572S 0.38 tolerated(0.35) benign(0.057) TCGA-E7-A7DU-01 12 57927804 57927804 C T DCTN2 Missense_Mutation p.D206N 0.27 tolerated(0.31) benign(0.004) TCGA-E7-A7DU-01 12 58016601 58016601 G T SLC26A10 Nonsense_Mutation p.E275* 0.12 TCGA-E7-A7DU-01 12 58189979 58189979 G A TSFM Missense_Mutation p.M218I 0.41 tolerated(0.31) benign(0.053) TCGA-E7-A7DU-01 12 62784963 62784963 G A USP15 Missense_Mutation p.D663N 0.48 tolerated(0.22) benign(0.021) TCGA-E7-A7DU-01 12 68052236 68052236 G C DYRK2 Missense_Mutation p.E517Q 0.20 tolerated(0.2) benign(0.131) TCGA-E7-A7DU-01 12 6935949 6935949 C T GPR162 Silent p.L449L 0.23 TCGA-E7-A7DU-01 12 7984228 7984228 C T SLC2A14 Missense_Mutation p.V105I 0.07 tolerated(0.36) benign(0.299) TCGA-E7-A7DU-01 12 94805532 94805532 C T CCDC41 Missense_Mutation p.E89K 0.15 tolerated(0.25) benign(0.068) TCGA-E7-A7DU-01 12 970316 970316 G C WNK1 Missense_Mutation p.E586D 0.40 tolerated(0.05) unknown(0) TCGA-E7-A7DU-01 12 9715608 9715608 A G RP11-726G1.1 RNA 1.00 TCGA-E7-A7DU-01 12 99019824 99019824 C T IKBIP Missense_Mutation p.E340K 0.28 deleterious(0.03) benign(0.219) TCGA-E7-A7DU-01 12 99019947 99019947 C G IKBIP Missense_Mutation p.D299H 0.24 deleterious(0.01) possibly_damaging(0.83) TCGA-E7-A7DU-01 12 99020043 99020043 C T IKBIP Missense_Mutation p.E267K 0.19 tolerated(0.25) benign(0.126) TCGA-E7-A7DU-01 12 99020201 99020201 C G IKBIP Missense_Mutation p.R214T 0.20 deleterious(0) possibly_damaging(0.903) TCGA-E7-A7DU-01 12 99020344 99020344 C T IKBIP Missense_Mutation p.M166I 0.22 tolerated(0.35) benign(0.003) TCGA-E7-A7DU-01 13 110839556 110839556 C T COL4A1 Missense_Mutation p.G553S 0.65 benign(0.013) TCGA-E7-A7DU-01 13 19997140 19997140 C G TPTE2 3'UTR 0.49 TCGA-E7-A7DU-01 13 46721099 46721099 C G LCP1 Missense_Mutation p.R373T 0.17 tolerated(0.68) benign(0.001) TCGA-E7-A7DU-01 13 95034742 95034742 C T GPC6 Silent p.D409D 0.13 TCGA-E7-A7DU-01 14 105410218 105410218 G A AHNAK2 Missense_Mutation p.S3857F 0.28 probably_damaging(0.961) TCGA-E7-A7DU-01 14 20344479 20344479 C G OR4K2 Missense_Mutation p.S18C 0.17 tolerated(0.34) benign(0.019) TCGA-E7-A7DU-01 14 20345342 20345342 C G OR4K2 Missense_Mutation p.L306V 0.24 tolerated(0.78) benign(0.082) TCGA-E7-A7DU-01 14 36768326 36768326 C T MBIP Missense_Mutation p.R333K 0.26 tolerated(0.93) benign(0.003) TCGA-E7-A7DU-01 14 53173937 53173937 C A PSMC6 Silent p.I14I 0.32 TCGA-E7-A7DU-01 14 64701791 64701791 C A ESR2 Missense_Mutation p.D435Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-E7-A7DU-01 14 77896090 77896090 C T VIPAS39 Silent p.K400K 0.29 TCGA-E7-A7DU-01 14 99640542 99640542 G A BCL11B Silent p.H877H 0.41 TCGA-E7-A7DU-01 15 28000567 28000567 G C OCA2 Silent p.L828L 0.46 TCGA-E7-A7DU-01 15 28424337 28424337 T C HERC2 Silent p.S2990S 0.50 TCGA-E7-A7DU-01 15 33938557 33938557 G A RYR3 Missense_Mutation p.M1257I 0.20 benign(0) TCGA-E7-A7DU-01 15 50925154 50925154 G T TRPM7 Missense_Mutation p.S348Y 0.30 tolerated(1) probably_damaging(0.921) TCGA-E7-A7DU-01 15 63638903 63638903 C G CA12 Missense_Mutation p.D38H 0.16 tolerated(0.31) possibly_damaging(0.713) TCGA-E7-A7DU-01 15 65681621 65681621 C T IGDCC4 Splice_Site p.X846_splice 0.29 TCGA-E7-A7DU-01 15 75500062 75500062 C T C15orf39 Missense_Mutation p.P558L 0.31 deleterious(0.02) benign(0) TCGA-E7-A7DU-01 16 14031702 14031702 G C ERCC4 Missense_Mutation p.E631Q 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-E7-A7DU-01 16 18895415 18895415 C T SMG1 Missense_Mutation p.E366K 0.23 deleterious(0) possibly_damaging(0.829) TCGA-E7-A7DU-01 16 21147655 21147655 C T DNAH3 Missense_Mutation p.M292I 0.25 deleterious(0.02) benign(0.078) TCGA-E7-A7DU-01 16 30515574 30515574 G A ITGAL Missense_Mutation p.D742N 0.40 tolerated(0.15) benign(0.03) TCGA-E7-A7DU-01 16 4848114 4848114 G T ROGDI Silent p.L201L 0.45 TCGA-E7-A7DU-01 16 57089390 57089390 C T NLRC5 Silent p.L1235L 0.34 TCGA-E7-A7DU-01 16 58582432 58582432 C T CNOT1 Intron 0.19 TCGA-E7-A7DU-01 16 84132867 84132867 G A MBTPS1 Missense_Mutation p.S71L 0.19 tolerated(0.33) benign(0.001) TCGA-E7-A7DU-01 17 1579345 1579345 C A PRPF8 Silent p.V852V 0.44 TCGA-E7-A7DU-01 17 2265520 2265520 G A SGSM2 Silent p.E138E 0.42 TCGA-E7-A7DU-01 17 26890514 26890514 G C PIGS Missense_Mutation p.Q135E 0.21 tolerated(0.31) benign(0.001) TCGA-E7-A7DU-01 17 27778620 27778620 C T TAOK1 Silent p.L18L 0.17 TCGA-E7-A7DU-01 17 29663812 29663812 C T NF1 Missense_Mutation p.L2103F 0.41 deleterious(0) probably_damaging(0.986) TCGA-E7-A7DU-01 17 33267615 33267615 G A CCT6B Missense_Mutation p.S304F 0.32 tolerated(0.07) benign(0.01) TCGA-E7-A7DU-01 17 35937676 35937676 C T SYNRG Missense_Mutation p.D209N 0.28 deleterious(0.04) benign(0.347) TCGA-E7-A7DU-01 17 36909000 36909000 G A PSMB3 5'UTR 0.21 TCGA-E7-A7DU-01 17 36909017 36909017 G A PSMB3 5'UTR 0.13 TCGA-E7-A7DU-01 17 36909447 36909447 G A PSMB3 Silent p.G16G 0.20 TCGA-E7-A7DU-01 17 42398543 42398543 G A SLC25A39 Nonsense_Mutation p.Q192* 0.31 TCGA-E7-A7DU-01 17 56289744 56289744 C G MKS1 Missense_Mutation p.E304Q 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-E7-A7DU-01 17 56382529 56382529 C T BZRAP1 Missense_Mutation p.E1813K 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A7DU-01 17 56382898 56382898 C T BZRAP1 Intron 0.35 TCGA-E7-A7DU-01 17 57665300 57665300 C G DHX40 Missense_Mutation p.P490A 0.23 deleterious(0) probably_damaging(0.991) TCGA-E7-A7DU-01 17 66872829 66872829 G C ABCA8 Silent p.L1365L 0.24 TCGA-E7-A7DU-01 17 73775131 73775131 T C H3F3B Missense_Mutation p.Y42C 0.47 deleterious_low_confidence(0.03) benign(0.007) TCGA-E7-A7DU-01 17 73836859 73836859 G T UNC13D Missense_Mutation p.L223M 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-E7-A7DU-01 17 7577079 7577079 C G TP53 Missense_Mutation p.E287Q 0.90 deleterious(0.04) possibly_damaging(0.843) TCGA-E7-A7DU-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.90 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DU-01 17 79169680 79169680 C G AZI1 Missense_Mutation p.Q657H 0.20 tolerated(0.1) benign(0.046) TCGA-E7-A7DU-01 17 8404176 8404176 C G MYH10 Missense_Mutation p.E1238Q 0.44 probably_damaging(0.997) TCGA-E7-A7DU-01 18 28581615 28581615 G A DSC3 Missense_Mutation p.S735L 0.23 deleterious(0) possibly_damaging(0.848) TCGA-E7-A7DU-01 18 31324936 31324936 G A ASXL3 Missense_Mutation p.M1708I 0.45 benign(0) TCGA-E7-A7DU-01 18 46447790 46447790 G A SMAD7 Silent p.F411F 0.20 TCGA-E7-A7DU-01 18 47777197 47777197 C A CCDC11 Missense_Mutation p.L309F 0.21 deleterious(0) probably_damaging(0.993) TCGA-E7-A7DU-01 18 55336669 55336669 C T ATP8B1 Missense_Mutation p.E660K 0.24 deleterious(0.01) benign(0.347) TCGA-E7-A7DU-01 18 8387076 8387076 G A PTPRM Missense_Mutation p.D1351N 0.16 deleterious(0.01) possibly_damaging(0.886) TCGA-E7-A7DU-01 18 8633277 8633277 G C RAB12 Missense_Mutation p.K126N 0.24 tolerated(0.48) benign(0.028) TCGA-E7-A7DU-01 19 15224893 15224893 G A SYDE1 3'UTR 0.26 TCGA-E7-A7DU-01 19 15905704 15905704 C T OR10H5 Silent p.L282L 0.40 TCGA-E7-A7DU-01 19 15989676 15989676 G A CYP4F2 Missense_Mutation p.R490C 0.49 deleterious(0.05) benign(0.12) TCGA-E7-A7DU-01 19 17759246 17759246 G A UNC13A Silent p.L604L 0.60 TCGA-E7-A7DU-01 19 18308281 18308281 C T RAB3A Silent p.%3D 0.23 TCGA-E7-A7DU-01 19 33642136 33642136 G C WDR88 Missense_Mutation p.Q243H 0.18 deleterious(0.03) probably_damaging(0.954) TCGA-E7-A7DU-01 19 36037609 36037609 G C TMEM147 Silent p.L81L 0.35 TCGA-E7-A7DU-01 19 36431529 36431529 G A LRFN3 Missense_Mutation p.R401Q 0.21 tolerated(0.48) benign(0.069) TCGA-E7-A7DU-01 19 41071430 41071430 G A SPTBN4 Missense_Mutation p.R2006Q 0.41 tolerated(0.16) benign(0.207) TCGA-E7-A7DU-01 19 43922660 43922660 G T TEX101 3'UTR 0.33 TCGA-E7-A7DU-01 19 47491290 47491290 G C ARHGAP35 Missense_Mutation p.E1291Q 0.61 deleterious(0.04) possibly_damaging(0.541) TCGA-E7-A7DU-01 19 48953614 48953614 G A GRWD1 Silent p.E171E 0.27 TCGA-E7-A7DU-01 19 49404145 49404145 G A NUCB1 Missense_Mutation p.R31Q 0.23 tolerated(0.32) benign(0.187) TCGA-E7-A7DU-01 19 50381800 50381800 G T TBC1D17 Missense_Mutation p.D56Y 0.16 deleterious(0.02) possibly_damaging(0.857) TCGA-E7-A7DU-01 19 50383551 50383551 G A TBC1D17 Missense_Mutation p.D71N 0.20 tolerated(0.37) benign(0.111) TCGA-E7-A7DU-01 19 52618120 52618120 C G ZNF616 Missense_Mutation p.R766T 0.17 deleterious(0.05) benign(0.001) TCGA-E7-A7DU-01 19 52719118 52719118 G T PPP2R1A Silent p.V298V 0.12 TCGA-E7-A7DU-01 19 53344550 53344550 C T ZNF468 Missense_Mutation p.D333N 0.16 deleterious(0.02) probably_damaging(0.945) TCGA-E7-A7DU-01 19 56206537 56206537 G A EPN1 Missense_Mutation p.V602I 0.24 tolerated(0.32) benign(0.087) TCGA-E7-A7DU-01 19 58319357 58319357 C T ZNF552 3'UTR 0.08 TCGA-E7-A7DU-01 19 7518403 7518403 G C ARHGEF18 Missense_Mutation p.D448H 0.20 deleterious(0.03) possibly_damaging(0.505) TCGA-E7-A7DU-01 19 8651487 8651487 C G ADAMTS10 Missense_Mutation p.Q786H 0.12 deleterious(0) possibly_damaging(0.722) TCGA-E7-A7DU-01 1 100701013 100701013 C G DBT Missense_Mutation p.R77T 0.22 tolerated(0.66) benign(0.002) TCGA-E7-A7DU-01 1 110882650 110882650 C T RBM15 Missense_Mutation p.S208L 0.25 deleterious(0.01) benign(0.009) TCGA-E7-A7DU-01 1 111992160 111992160 G C ATP5F1 5'UTR 0.17 TCGA-E7-A7DU-01 1 1138988 1138988 C G TNFRSF18 Missense_Mutation p.D251H 0.16 tolerated_low_confidence(0.07) benign(0.002) TCGA-E7-A7DU-01 1 117634555 117634555 C G TTF2 Missense_Mutation p.L930V 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-E7-A7DU-01 1 120054244 120054244 C G HSD3B1 Silent p.V88V 0.19 TCGA-E7-A7DU-01 1 144892416 144892416 C A PDE4DIP Intron 0.11 TCGA-E7-A7DU-01 1 149906931 149906931 C T MTMR11 Missense_Mutation p.R139Q 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A7DU-01 1 153910041 153910041 C G DENND4B Missense_Mutation p.E719Q 0.19 tolerated(0.06) benign(0.062) TCGA-E7-A7DU-01 1 154067535 154067535 C T NUP210L Missense_Mutation p.R688Q 0.40 tolerated(0.18) benign(0.132) TCGA-E7-A7DU-01 1 155001827 155001827 C A DCST2 Missense_Mutation p.E408D 0.36 tolerated(0.43) benign(0.01) TCGA-E7-A7DU-01 1 157667153 157667153 C T FCRL3 Missense_Mutation p.M207I 0.29 deleterious(0.02) benign(0.098) TCGA-E7-A7DU-01 1 158813154 158813154 C T MNDA Silent p.T117T 0.39 TCGA-E7-A7DU-01 1 160261131 160261131 G T COPA Silent p.A1147A 0.12 TCGA-E7-A7DU-01 1 161200542 161200542 A G NR1I3 Intron 0.17 TCGA-E7-A7DU-01 1 16199525 16199525 C T SPEN Missense_Mutation p.R100C 0.23 probably_damaging(0.997) TCGA-E7-A7DU-01 1 1647823 1647823 C G CDK11A Missense_Mutation p.K150N 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E7-A7DU-01 1 178414665 178414665 G A RASAL2 Missense_Mutation p.D499N 0.26 deleterious(0) probably_damaging(0.996) TCGA-E7-A7DU-01 1 179095723 179095723 C T ABL2 Missense_Mutation p.S159N 0.17 deleterious(0) probably_damaging(0.982) TCGA-E7-A7DU-01 1 179316748 179316748 C G SOAT1 Silent p.L377L 0.36 TCGA-E7-A7DU-01 1 186291658 186291658 C T TPR Missense_Mutation p.G2120S 0.30 benign(0.022) TCGA-E7-A7DU-01 1 1956492 1956492 A G GABRD Silent p.G60G 0.42 TCGA-E7-A7DU-01 1 20107215 20107215 G A TMCO4 Nonsense_Mutation p.Q13* 0.58 TCGA-E7-A7DU-01 1 203786164 203786164 C T ZC3H11A 5'UTR 0.25 TCGA-E7-A7DU-01 1 21268568 21268568 G A EIF4G3 Missense_Mutation p.S310L 0.24 deleterious_low_confidence(0.01) benign(0.066) TCGA-E7-A7DU-01 1 218504419 218504419 G A RRP15 Missense_Mutation p.D279N 0.14 deleterious(0.01) possibly_damaging(0.711) TCGA-E7-A7DU-01 1 220935151 220935151 C T MARC2 Nonsense_Mutation p.Q200* 0.37 TCGA-E7-A7DU-01 1 23520688 23520688 C G HTR1D Missense_Mutation p.E9Q 0.18 tolerated(0.47) benign(0.004) TCGA-E7-A7DU-01 1 237948027 237948027 C T RYR2 Nonsense_Mutation p.Q4339* 0.52 TCGA-E7-A7DU-01 1 244218646 244218646 G C ZBTB18 Missense_Mutation p.D524H 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-E7-A7DU-01 1 248616968 248616968 C T OR2T2 Silent p.I290I 0.14 TCGA-E7-A7DU-01 1 27057727 27057727 C G ARID1A Missense_Mutation p.Q479E 0.20 benign(0) TCGA-E7-A7DU-01 1 27057775 27057775 C T ARID1A Missense_Mutation p.H495Y 0.21 benign(0) TCGA-E7-A7DU-01 1 32374486 32374486 G A PTP4A2 Silent p.F157F 0.22 TCGA-E7-A7DU-01 1 32660671 32660671 G T TXLNA Nonsense_Mutation p.E506* 0.23 TCGA-E7-A7DU-01 1 3394474 3394474 G A ARHGEF16 Silent p.L503L 0.16 TCGA-E7-A7DU-01 1 39469743 39469743 C G AKIRIN1 3'UTR 0.23 TCGA-E7-A7DU-01 1 45484560 45484560 C A ZSWIM5 Missense_Mutation p.V1042L 0.21 tolerated(0.11) unknown(0) TCGA-E7-A7DU-01 1 62321724 62321724 C T INADL Missense_Mutation p.S712L 0.22 deleterious(0) possibly_damaging(0.61) TCGA-E7-A7DU-01 1 63021642 63021642 G C DOCK7 Missense_Mutation p.S817C 0.25 tolerated(0.26) benign(0.002) TCGA-E7-A7DU-01 1 6528344 6528344 G T PLEKHG5 Missense_Mutation p.S930Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-E7-A7DU-01 1 78470867 78470867 C T DNAJB4 Nonsense_Mutation p.R25* 0.23 TCGA-E7-A7DU-01 1 79002130 79002130 C G PTGFR Missense_Mutation p.L280V 0.44 tolerated(0.47) benign(0.007) TCGA-E7-A7DU-01 1 89299058 89299058 G A PKN2 Missense_Mutation p.R961Q 0.41 deleterious(0.05) possibly_damaging(0.532) TCGA-E7-A7DU-01 20 25477387 25477387 C G NINL Missense_Mutation p.E408Q 0.56 deleterious(0) probably_damaging(0.922) TCGA-E7-A7DU-01 20 34220269 34220269 C A CPNE1 Silent p.L121L 0.48 TCGA-E7-A7DU-01 20 43837174 43837174 T C SEMG1 Silent p.N412N 0.49 TCGA-E7-A7DU-01 20 45003042 45003042 T C ELMO2 Missense_Mutation p.E403G 0.61 deleterious(0) possibly_damaging(0.598) TCGA-E7-A7DU-01 20 47700667 47700667 C G CSE1L Silent p.L529L 0.19 TCGA-E7-A7DU-01 20 52188372 52188372 G A ZNF217 Nonsense_Mutation p.Q1020* 0.26 TCGA-E7-A7DU-01 21 30927599 30927599 G C GRIK1 Missense_Mutation p.T794S 0.25 tolerated(1) possibly_damaging(0.631) TCGA-E7-A7DU-01 21 31062300 31062300 C T GRIK1 Missense_Mutation p.D98N 0.22 tolerated(0.15) possibly_damaging(0.717) TCGA-E7-A7DU-01 21 37660402 37660402 C G DOPEY2 Missense_Mutation p.S2084C 0.19 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DU-01 21 43327853 43327853 C G C2CD2 Missense_Mutation p.K353N 0.12 deleterious(0) possibly_damaging(0.848) TCGA-E7-A7DU-01 21 45107563 45107563 G T RRP1B Silent p.L436L 0.55 TCGA-E7-A7DU-01 22 18898504 18898504 C T DGCR6 Missense_Mutation p.A159V 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A7DU-01 22 21357246 21357246 C T AC002472.1 3'Flank 0.49 TCGA-E7-A7DU-01 22 23980979 23980979 C T GUSBP11 RNA 0.33 TCGA-E7-A7DU-01 22 39636869 39636869 G A PDGFB Intron 0.17 TCGA-E7-A7DU-01 22 46239025 46239025 G A ATXN10 Silent p.L464L 0.13 TCGA-E7-A7DU-01 22 50944157 50944157 C T LMF2 Missense_Mutation p.D288N 0.34 deleterious(0.03) possibly_damaging(0.867) TCGA-E7-A7DU-01 2 100917194 100917194 G A LONRF2 Missense_Mutation p.S326F 0.38 deleterious(0) possibly_damaging(0.768) TCGA-E7-A7DU-01 2 113780316 113780316 G C IL36B Missense_Mutation p.L144V 0.41 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-E7-A7DU-01 2 114369637 114369637 C T RPL23AP7 RNA 0.11 TCGA-E7-A7DU-01 2 118677944 118677944 G C CCDC93 Missense_Mutation p.S624C 0.17 deleterious(0.01) possibly_damaging(0.764) TCGA-E7-A7DU-01 2 161056612 161056612 G A ITGB6 5'UTR 0.07 TCGA-E7-A7DU-01 2 168098343 168098343 G C XIRP2 Missense_Mutation p.E367Q 0.24 possibly_damaging(0.514) TCGA-E7-A7DU-01 2 170048422 170048422 C G LRP2 Missense_Mutation p.E2984D 0.63 probably_damaging(0.999) TCGA-E7-A7DU-01 2 178482235 178482235 C T TTC30A Missense_Mutation p.E399K 0.29 deleterious(0.02) benign(0.394) TCGA-E7-A7DU-01 2 183129137 183129137 T A PDE1A Nonsense_Mutation p.R36* 0.57 TCGA-E7-A7DU-01 2 207636720 207636720 G A FASTKD2 Missense_Mutation p.E365K 0.21 tolerated(0.13) benign(0.111) TCGA-E7-A7DU-01 2 228884192 228884192 C T SPHKAP Missense_Mutation p.D460N 0.62 tolerated(0.09) benign(0.111) TCGA-E7-A7DU-01 2 231135344 231135344 G C SP140 Missense_Mutation p.K496N 0.26 deleterious(0) probably_damaging(0.986) TCGA-E7-A7DU-01 2 242662634 242662634 G A ING5 Missense_Mutation p.E210K 0.25 deleterious(0) probably_damaging(0.998) TCGA-E7-A7DU-01 2 25973097 25973097 C T ASXL2 Missense_Mutation p.R443K 0.08 tolerated(0.88) benign(0.001) TCGA-E7-A7DU-01 2 28248115 28248115 C G BRE Nonsense_Mutation p.S108* 0.32 TCGA-E7-A7DU-01 2 31637577 31637577 G A XDH 5'UTR 0.27 TCGA-E7-A7DU-01 2 32460539 32460539 C T NLRC4 Missense_Mutation p.E905K 0.07 tolerated(0.92) benign(0) TCGA-E7-A7DU-01 2 32692602 32692602 G T BIRC6 Missense_Mutation p.R1789I 0.39 probably_damaging(0.991) TCGA-E7-A7DU-01 2 32692639 32692639 G A BIRC6 Silent p.L1801L 0.42 TCGA-E7-A7DU-01 2 32692643 32692643 G A BIRC6 Missense_Mutation p.D1803N 0.41 probably_damaging(0.989) TCGA-E7-A7DU-01 2 32692709 32692709 G C BIRC6 Missense_Mutation p.E1825Q 0.48 probably_damaging(0.986) TCGA-E7-A7DU-01 2 3691369 3691369 G A COLEC11 Silent p.E173E 0.33 TCGA-E7-A7DU-01 2 55573415 55573415 C G CCDC88A Missense_Mutation p.D313H 0.44 deleterious(0) probably_damaging(1) TCGA-E7-A7DU-01 2 65541035 65541035 C T SPRED2 Missense_Mutation p.S286N 0.27 tolerated(0.51) benign(0.001) TCGA-E7-A7DU-01 2 69581653 69581653 G T GFPT1 Missense_Mutation p.S218Y 0.21 deleterious(0.01) possibly_damaging(0.615) TCGA-E7-A7DU-01 2 85826190 85826190 C T TMEM150A 3'UTR 0.43 TCGA-E7-A7DU-01 3 10019116 10019116 C T EMC3 Missense_Mutation p.R57Q 0.15 deleterious(0) possibly_damaging(0.603) TCGA-E7-A7DU-01 3 10070338 10070338 C T FANCD2 5'UTR 0.22 TCGA-E7-A7DU-01 3 111312457 111312457 C T ZBED2 Missense_Mutation p.E198K 0.25 deleterious(0) probably_damaging(0.978) TCGA-E7-A7DU-01 3 112724785 112724785 G C C3orf17 Missense_Mutation p.I434M 0.24 tolerated(0.17) benign(0.073) TCGA-E7-A7DU-01 3 113379739 113379739 C T KIAA2018 Missense_Mutation p.E264K 0.14 benign(0.05) TCGA-E7-A7DU-01 3 129156119 129156119 G A MBD4 Missense_Mutation p.S123L 0.20 tolerated(0.05) possibly_damaging(0.529) TCGA-E7-A7DU-01 3 130282181 130282181 C T COL6A6 Nonsense_Mutation p.Q112* 0.48 TCGA-E7-A7DU-01 3 132247062 132247062 C G DNAJC13 Silent p.L2137L 0.26 TCGA-E7-A7DU-01 3 135789355 135789355 G C PPP2R3A Silent p.L835L 0.44 TCGA-E7-A7DU-01 3 142222229 142222229 G T ATR Missense_Mutation p.Q1755K 0.29 tolerated(0.16) possibly_damaging(0.857) TCGA-E7-A7DU-01 3 148925199 148925199 C T CP Silent p.Q329Q 0.19 TCGA-E7-A7DU-01 3 150289864 150289864 G C EIF2A Missense_Mutation p.D311H 0.39 deleterious(0) probably_damaging(0.995) TCGA-E7-A7DU-01 3 15300560 15300560 G A SH3BP5 Intron 0.16 TCGA-E7-A7DU-01 3 15711999 15711999 C T ANKRD28 Silent p.L980L 0.13 TCGA-E7-A7DU-01 3 178936091 178936091 G C PIK3CA Missense_Mutation p.E545Q 0.45 tolerated(0.06) possibly_damaging(0.796) TCGA-E7-A7DU-01 3 197401316 197401316 C T KIAA0226 3'Flank 0.20 TCGA-E7-A7DU-01 3 33614798 33614798 C A CLASP2 Missense_Mutation p.D844Y 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A7DU-01 3 3886769 3886769 C G LRRN1 Silent p.L148L 0.48 TCGA-E7-A7DU-01 3 39139816 39139816 C T GORASP1 Missense_Mutation p.E412K 0.21 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-E7-A7DU-01 3 46586635 46586635 C G LRRC2 Missense_Mutation p.K78N 0.19 tolerated(0.17) benign(0.006) TCGA-E7-A7DU-01 3 49050894 49050894 C T WDR6 Missense_Mutation p.R673W 0.19 tolerated(0.19) probably_damaging(0.985) TCGA-E7-A7DU-01 3 49323684 49323684 C G USP4 Missense_Mutation p.D683H 0.18 tolerated(0.06) benign(0.033) TCGA-E7-A7DU-01 3 49689071 49689071 G C BSN Missense_Mutation p.Q694H 0.61 unknown(0) TCGA-E7-A7DU-01 3 58484490 58484490 A G KCTD6 Missense_Mutation p.N3S 0.46 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-E7-A7DU-01 3 97311456 97311456 G A EPHA6 Missense_Mutation p.R796K 0.23 tolerated(0.41) benign(0.001) TCGA-E7-A7DU-01 4 10100747 10100747 C T WDR1 Silent p.L82L 0.11 TCGA-E7-A7DU-01 4 110763652 110763652 C T RRH Silent p.L250L 0.28 TCGA-E7-A7DU-01 4 140450296 140450296 C T SETD7 Missense_Mutation p.E151K 0.30 tolerated(0.65) benign(0) TCGA-E7-A7DU-01 4 143094931 143094931 C T INPP4B Missense_Mutation p.E405K 0.33 deleterious(0.01) possibly_damaging(0.805) TCGA-E7-A7DU-01 4 15516384 15516384 G C CC2D2A Missense_Mutation p.D258H 0.44 deleterious(0.01) benign(0.043) TCGA-E7-A7DU-01 4 177093565 177093565 G A WDR17 Missense_Mutation p.E1087K 0.24 tolerated(0.12) possibly_damaging(0.574) TCGA-E7-A7DU-01 4 178358580 178358580 C T AGA Missense_Mutation p.D201N 0.32 tolerated(0.67) benign(0) TCGA-E7-A7DU-01 4 1806089 1806089 G T FGFR3 Missense_Mutation p.G372C 0.58 tolerated(0.07) benign(0.029) TCGA-E7-A7DU-01 4 184368494 184368494 G A CDKN2AIP Missense_Mutation p.E553K 0.28 deleterious(0) possibly_damaging(0.637) TCGA-E7-A7DU-01 4 22444445 22444445 G A GPR125 Missense_Mutation p.H250Y 0.42 tolerated(0.07) possibly_damaging(0.462) TCGA-E7-A7DU-01 4 38830899 38830899 C T TLR6 Missense_Mutation p.E66K 0.15 tolerated(0.07) benign(0.003) TCGA-E7-A7DU-01 4 6863212 6863212 G A KIAA0232 Missense_Mutation p.R368K 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-E7-A7DU-01 4 70615504 70615504 G A SULT1B1 Missense_Mutation p.R104W 0.26 deleterious(0) probably_damaging(1) TCGA-E7-A7DU-01 4 77818850 77818850 G A SOWAHB Silent p.F51F 0.56 TCGA-E7-A7DU-01 4 93511382 93511382 C T GRID2 Silent p.I63I 0.21 TCGA-E7-A7DU-01 5 109202807 109202807 G A MAN2A1 3'UTR 0.36 TCGA-E7-A7DU-01 5 139494276 139494276 C T PURA Silent p.I170I 0.30 TCGA-E7-A7DU-01 5 140256925 140256925 A G PCDHA12 Missense_Mutation p.H623R 0.55 tolerated_low_confidence(1) benign(0) TCGA-E7-A7DU-01 5 140474489 140474489 G T PCDHB2 Nonsense_Mutation p.E39* 0.41 TCGA-E7-A7DU-01 5 140764012 140764012 G A PCDHGA7 Missense_Mutation p.A516T 0.67 deleterious_low_confidence(0) possibly_damaging(0.668) TCGA-E7-A7DU-01 5 145428766 145428766 G C SH3RF2 Missense_Mutation p.R427P 0.26 deleterious(0.03) probably_damaging(0.979) TCGA-E7-A7DU-01 5 154395565 154395565 G T KIF4B Missense_Mutation p.D716Y 0.54 deleterious(0) probably_damaging(0.968) TCGA-E7-A7DU-01 5 154396962 154396962 G C KIF4B Missense_Mutation p.K1181N 0.22 tolerated_low_confidence(0.17) benign(0.008) TCGA-E7-A7DU-01 5 172386879 172386879 G A RPL26L1 Translation_Start_Site p.M1? 0.59 deleterious(0.02) benign(0.025) TCGA-E7-A7DU-01 5 176304654 176304654 G A UNC5A Missense_Mutation p.D529N 0.28 deleterious(0.02) benign(0.16) TCGA-E7-A7DU-01 5 178358553 178358553 G C ZFP2 Missense_Mutation p.G80A 0.26 deleterious(0) benign(0.006) TCGA-E7-A7DU-01 5 26885845 26885845 C T CDH9 Missense_Mutation p.R587H 0.26 tolerated(0.07) possibly_damaging(0.787) TCGA-E7-A7DU-01 5 37351334 37351334 G T NUP155 Missense_Mutation p.F227L 0.37 deleterious(0) probably_damaging(0.995) TCGA-E7-A7DU-01 5 45262847 45262847 G A HCN1 Nonsense_Mutation p.Q617* 0.23 TCGA-E7-A7DU-01 5 52157322 52157322 G C ITGA1 Missense_Mutation p.R75T 0.24 deleterious(0) possibly_damaging(0.57) TCGA-E7-A7DU-01 5 58289196 58289196 C G PDE4D Intron 0.32 TCGA-E7-A7DU-01 5 72383916 72383916 G C FCHO2 Nonstop_Mutation p.*811Sext*27 0.32 TCGA-E7-A7DU-01 5 79025197 79025197 G A CMYA5 Silent p.P203P 0.28 TCGA-E7-A7DU-01 5 94022349 94022349 G A ANKRD32 Missense_Mutation p.E683K 0.28 deleterious(0) probably_damaging(0.998) TCGA-E7-A7DU-01 5 96082069 96082069 A G CAST Silent p.L367L 0.25 TCGA-E7-A7DU-01 6 12125250 12125250 C T HIVEP1 Missense_Mutation p.S1741L 0.22 deleterious(0) benign(0.354) TCGA-E7-A7DU-01 6 127611357 127611357 C T ECHDC1 Missense_Mutation p.G194D 0.11 deleterious(0) probably_damaging(1) TCGA-E7-A7DU-01 6 151277173 151277173 G A MTHFD1L Missense_Mutation p.G590E 0.31 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DU-01 6 152652535 152652535 C T SYNE1 Missense_Mutation p.D4429N 0.10 possibly_damaging(0.628) TCGA-E7-A7DU-01 6 152690738 152690738 G T SYNE1 Silent p.I3173I 0.12 TCGA-E7-A7DU-01 6 161513086 161513086 G A MAP3K4 Silent p.Q1060Q 0.16 TCGA-E7-A7DU-01 6 167570862 167570862 G C GPR31 Missense_Mutation p.S153C 0.43 deleterious(0.04) benign(0.239) TCGA-E7-A7DU-01 6 25450146 25450146 C A LRRC16A Missense_Mutation p.S131Y 0.17 tolerated(0.34) benign(0.089) TCGA-E7-A7DU-01 6 29080224 29080224 C T OR2J3 Missense_Mutation p.A186V 0.49 tolerated(0.38) benign(0.042) TCGA-E7-A7DU-01 6 30652771 30652771 C G PPP1R18 Missense_Mutation p.R342P 0.21 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-E7-A7DU-01 6 35021879 35021879 G A ANKS1A Missense_Mutation p.E672K 0.15 deleterious(0.02) possibly_damaging(0.901) TCGA-E7-A7DU-01 6 35773558 35773558 C T LHFPL5 Silent p.S37S 0.21 TCGA-E7-A7DU-01 6 37427401 37427401 C T CMTR1 Missense_Mutation p.R346W 0.24 deleterious(0) possibly_damaging(0.893) TCGA-E7-A7DU-01 6 41029374 41029374 C G APOBEC2 Missense_Mutation p.L147V 0.47 deleterious(0) benign(0.277) TCGA-E7-A7DU-01 6 47763029 47763029 C T OPN5 Silent p.F162F 0.28 TCGA-E7-A7DU-01 6 47846815 47846815 G A PTCHD4 Nonsense_Mutation p.R589* 0.60 TCGA-E7-A7DU-01 6 53363649 53363649 G T GCLC Missense_Mutation p.Q607K 0.24 tolerated(0.59) benign(0.002) TCGA-E7-A7DU-01 6 62688060 62688060 G C KHDRBS2 Missense_Mutation p.H132D 0.43 deleterious(0) probably_damaging(0.998) TCGA-E7-A7DU-01 6 66204881 66204881 C T EYS Silent p.L141L 0.21 TCGA-E7-A7DU-01 6 90504322 90504322 G C MDN1 Silent p.L176L 0.46 TCGA-E7-A7DU-01 7 100552184 100552184 C T MUC3A Missense_Mutation p.S312F 0.08 tolerated(0.08) probably_damaging(0.99) TCGA-E7-A7DU-01 7 100887357 100887357 C T FIS1 Missense_Mutation p.E37K 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-E7-A7DU-01 7 105148663 105148663 C G PUS7 Missense_Mutation p.E99D 0.16 tolerated(0.18) probably_damaging(0.99) TCGA-E7-A7DU-01 7 111980949 111980949 G A ZNF277 Silent p.V344V 0.72 TCGA-E7-A7DU-01 7 116593556 116593556 G A ST7 5'UTR 0.21 TCGA-E7-A7DU-01 7 121726122 121726122 C T AASS Missense_Mutation p.E710K 0.20 tolerated(0.34) benign(0.063) TCGA-E7-A7DU-01 7 130137015 130137015 G A MEST Missense_Mutation p.G67E 0.15 tolerated(0.11) benign(0.186) TCGA-E7-A7DU-01 7 143792634 143792634 C T OR2A12 Missense_Mutation p.S145L 0.18 tolerated(0.18) benign(0.002) TCGA-E7-A7DU-01 7 150094001 150094001 C T ZNF775 Silent p.F144F 0.15 TCGA-E7-A7DU-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.23 tolerated(0.1) benign(0.189) TCGA-E7-A7DU-01 7 27187097 27187097 G A HOXA6 Missense_Mutation p.S91L 0.24 tolerated(0.09) possibly_damaging(0.885) TCGA-E7-A7DU-01 7 29923516 29923516 C T WIPF3 Missense_Mutation p.P136S 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.504) TCGA-E7-A7DU-01 7 31855682 31855682 C T PDE1C Missense_Mutation p.E617K 0.19 tolerated(0.13) benign(0.214) TCGA-E7-A7DU-01 7 38279699 38279699 C T TRGC2 Missense_Mutation p.V166M 0.21 tolerated(0.41) benign(0.025) TCGA-E7-A7DU-01 7 44151899 44151899 C T AEBP1 Silent p.R732R 0.11 TCGA-E7-A7DU-01 7 63726769 63726769 C T ZNF679 Missense_Mutation p.S253L 0.19 deleterious(0.02) benign(0.116) TCGA-E7-A7DU-01 7 6456163 6456163 G C DAGLB Intron 0.19 TCGA-E7-A7DU-01 7 76239498 76239498 C A POMZP3 3'UTR 0.12 TCGA-E7-A7DU-01 7 77256769 77256769 C T PTPN12 Silent p.F591F 0.13 TCGA-E7-A7DU-01 7 77256781 77256781 C T PTPN12 Silent p.L595L 0.13 TCGA-E7-A7DU-01 7 77256789 77256789 C T PTPN12 Missense_Mutation p.T598I 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.792) TCGA-E7-A7DU-01 7 92028201 92028201 G C ANKIB1 Missense_Mutation p.D1070H 0.91 deleterious_low_confidence(0.01) benign(0.309) TCGA-E7-A7DU-01 7 98548541 98548541 G A TRRAP Missense_Mutation p.E1786K 0.15 possibly_damaging(0.562) TCGA-E7-A7DU-01 7 99764213 99764213 G A GAL3ST4 Missense_Mutation p.S114F 0.13 tolerated(0.06) possibly_damaging(0.83) TCGA-E7-A7DU-01 8 103564016 103564016 G C ODF1 Missense_Mutation p.E21Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-E7-A7DU-01 8 125463086 125463086 G A TRMT12 5'UTR 0.26 TCGA-E7-A7DU-01 8 132002709 132002709 C T ADCY8 Missense_Mutation p.R347H 0.69 deleterious(0) probably_damaging(0.991) TCGA-E7-A7DU-01 8 133014902 133014902 G A EFR3A Silent p.E753E 0.51 TCGA-E7-A7DU-01 8 139145000 139145000 G A FAM135B Silent p.L1353L 0.51 TCGA-E7-A7DU-01 8 145582926 145582926 G A SLC52A2 5'UTR 0.45 TCGA-E7-A7DU-01 8 27954794 27954794 G C ELP3 Silent p.L26L 0.45 TCGA-E7-A7DU-01 8 91013777 91013777 C T DECR1 Silent p.L19L 0.29 TCGA-E7-A7DU-01 8 92033578 92033578 G A TMEM55A Missense_Mutation p.P54L 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-E7-A7DU-01 9 102769914 102769914 C G ERP44 Missense_Mutation p.E274Q 0.42 tolerated(0.19) benign(0.043) TCGA-E7-A7DU-01 9 131072029 131072029 C T TRUB2 Missense_Mutation p.D266N 0.30 tolerated(0.07) possibly_damaging(0.548) TCGA-E7-A7DU-01 9 136262346 136262346 C G C9orf96 Missense_Mutation p.L308V 0.38 tolerated(0.17) benign(0.125) TCGA-E7-A7DU-01 9 140449838 140449838 C T DPH7 Silent p.R404R 0.90 TCGA-E7-A7DU-01 9 27292453 27292454 - TT EQTN Frame_Shift_Ins p.S108Nfs*32 0.30 TCGA-E7-A7DU-01 9 5812933 5812933 G A ERMP1 Missense_Mutation p.S326L 0.33 deleterious(0) possibly_damaging(0.898) TCGA-E7-A7DU-01 9 95480952 95480952 G A BICD2 Nonsense_Mutation p.Q659* 0.42 TCGA-E7-A7DU-01 X 100178035 100178035 C T XKRX Missense_Mutation p.M117I 0.55 tolerated(0.33) benign(0.001) TCGA-E7-A7DU-01 X 100601393 100601393 G C TIMM8A 3'UTR 0.29 TCGA-E7-A7DU-01 X 100601472 100601472 G C TIMM8A 3'UTR 0.37 TCGA-E7-A7DU-01 X 100601508 100601508 G A TIMM8A Silent p.F91F 0.38 TCGA-E7-A7DU-01 X 123190075 123190075 C T STAG2 Missense_Mutation p.L432F 0.96 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A7DU-01 X 123215341 123215341 C T STAG2 Nonsense_Mutation p.Q963* 0.89 TCGA-E7-A7DU-01 X 123526111 123526111 G A TENM1 Nonsense_Mutation p.R1827* 0.58 TCGA-E7-A7DU-01 X 133559266 133559266 G A PHF6 Missense_Mutation p.R335K 0.41 tolerated_low_confidence(0.07) probably_damaging(0.952) TCGA-E7-A7DU-01 X 134987535 134987535 G A SAGE1 Missense_Mutation p.M146I 0.92 tolerated(0.12) possibly_damaging(0.546) TCGA-E7-A7DU-01 X 153697420 153697420 G A PLXNA3 Missense_Mutation p.E1486K 0.38 deleterious(0.03) benign(0.349) TCGA-E7-A7DU-01 X 1553955 1553955 G A ASMTL Silent p.S120S 0.19 TCGA-E7-A7DU-01 X 21985322 21985322 G A SMS Missense_Mutation p.E20K 0.35 tolerated(0.14) benign(0.001) TCGA-E7-A7DU-01 X 24190908 24190908 G C ZFX Missense_Mutation p.D17H 0.38 tolerated(0.52) benign(0.001) TCGA-E7-A7DU-01 X 44870204 44870204 A T KDM6A Splice_Site p.X129_splice 0.71 TCGA-E7-A7DU-01 Y 15469785 15469785 G T UTY Nonsense_Mutation p.S417* 0.94 TCGA-E7-A7DV-01 10 115664748 115664748 C T NHLRC2 Missense_Mutation p.S626L 0.24 tolerated(0.85) benign(0.002) TCGA-E7-A7DV-01 10 116735156 116735156 C T TRUB1 3'UTR 0.25 TCGA-E7-A7DV-01 10 120879962 120879962 C G FAM45A Silent p.T197T 0.20 TCGA-E7-A7DV-01 10 129913453 129913453 C G MKI67 Missense_Mutation p.D407H 0.29 tolerated(0.05) possibly_damaging(0.887) TCGA-E7-A7DV-01 10 135351380 135351380 C G CYP2E1 Missense_Mutation p.F427L 0.53 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 10 17645947 17645947 C T PTPLA Silent p.Q119Q 0.26 TCGA-E7-A7DV-01 10 20465945 20465945 A G PLXDC2 Missense_Mutation p.I301V 0.12 deleterious(0) possibly_damaging(0.598) TCGA-E7-A7DV-01 10 27538006 27538006 C G RP11-85G18.6 Intron 0.26 TCGA-E7-A7DV-01 10 51585246 51585246 G A NCOA4 Missense_Mutation p.E465K 0.33 deleterious(0.05) benign(0.285) TCGA-E7-A7DV-01 10 51585254 51585254 G A NCOA4 Silent p.E467E 0.30 TCGA-E7-A7DV-01 10 6262806 6262806 G A PFKFB3 Missense_Mutation p.G270D 0.14 probably_damaging(1) TCGA-E7-A7DV-01 10 64967167 64967167 G C JMJD1C Nonsense_Mutation p.S1421* 0.34 TCGA-E7-A7DV-01 10 97096592 97096592 C T SORBS1 Missense_Mutation p.D1109N 0.23 tolerated_low_confidence(0.28) benign(0.003) TCGA-E7-A7DV-01 11 101832962 101832962 C A KIAA1377 Missense_Mutation p.S399Y 0.57 tolerated(0.14) benign(0.055) TCGA-E7-A7DV-01 11 103182627 103182627 G C DYNC2H1 Missense_Mutation p.K3845N 0.14 benign(0.202) TCGA-E7-A7DV-01 11 104912208 104912208 G A CARD16 Silent p.L171L 0.08 TCGA-E7-A7DV-01 11 108412452 108412452 G A EXPH5 Silent p.C69C 0.06 TCGA-E7-A7DV-01 11 108412512 108412512 G C EXPH5 Missense_Mutation p.I49M 0.04 deleterious(0) probably_damaging(0.939) TCGA-E7-A7DV-01 11 113295282 113295282 C G DRD2 Missense_Mutation p.R31T 0.19 tolerated(0.15) benign(0.002) TCGA-E7-A7DV-01 11 122722445 122722445 C G CRTAM Missense_Mutation p.Q80E 0.13 tolerated(1) benign(0.037) TCGA-E7-A7DV-01 11 126141492 126141492 G A FOXRED1 Silent p.L82L 0.31 TCGA-E7-A7DV-01 11 132016233 132016233 C G NTM Silent p.L75L 0.16 TCGA-E7-A7DV-01 11 20119140 20119140 C T NAV2 Silent p.V2069V 0.51 TCGA-E7-A7DV-01 11 48149393 48149393 C A PTPRJ Silent p.I385I 0.28 TCGA-E7-A7DV-01 11 56409283 56409283 A G OR5AP2 Silent p.F211F 0.04 TCGA-E7-A7DV-01 11 57886840 57886840 G A OR9I1 Missense_Mutation p.P26L 0.29 tolerated(0.45) benign(0.011) TCGA-E7-A7DV-01 11 61912738 61912738 C G INCENP Missense_Mutation p.Q605E 0.29 tolerated(0.05) unknown(0) TCGA-E7-A7DV-01 11 64525362 64525362 C T PYGM Nonsense_Mutation p.W183* 0.28 TCGA-E7-A7DV-01 11 64536963 64536963 C T SF1 Missense_Mutation p.D325N 0.23 tolerated(0.31) benign(0.44) TCGA-E7-A7DV-01 11 64536968 64536968 C T SF1 Missense_Mutation p.G323E 0.25 tolerated(0.15) possibly_damaging(0.809) TCGA-E7-A7DV-01 11 64536969 64536969 C T SF1 Missense_Mutation p.G323R 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-E7-A7DV-01 11 66049795 66049795 G T CNIH2 Silent p.R49R 0.19 TCGA-E7-A7DV-01 11 66109600 66109600 C T BRMS1 Missense_Mutation p.G36S 0.16 tolerated(0.54) possibly_damaging(0.714) TCGA-E7-A7DV-01 11 70331708 70331708 G A SHANK2 Nonsense_Mutation p.Q1565* 0.26 TCGA-E7-A7DV-01 11 70332669 70332669 G C SHANK2 Silent p.L1244L 0.22 TCGA-E7-A7DV-01 11 73806357 73806357 C T C2CD3 Missense_Mutation p.E1026K 0.19 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 11 73809142 73809142 C G C2CD3 Missense_Mutation p.R964T 0.26 deleterious(0) probably_damaging(0.984) TCGA-E7-A7DV-01 11 93800777 93800777 C G HEPHL1 Missense_Mutation p.F308L 0.24 tolerated(0.1) probably_damaging(0.999) TCGA-E7-A7DV-01 12 101732716 101732716 G C UTP20 Missense_Mutation p.E1332Q 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-E7-A7DV-01 12 104721439 104721439 C T TXNRD1 Missense_Mutation p.S511F 0.40 deleterious(0) possibly_damaging(0.801) TCGA-E7-A7DV-01 12 108912274 108912274 C G FICD Silent p.L133L 0.27 TCGA-E7-A7DV-01 12 110290444 110290444 G C GLTP Silent p.L182L 0.37 TCGA-E7-A7DV-01 12 1702577 1702577 G A FBXL14 Missense_Mutation p.S219F 0.12 deleterious(0) possibly_damaging(0.615) TCGA-E7-A7DV-01 12 48547313 48547313 C G ASB8 Splice_Site 0.43 TCGA-E7-A7DV-01 12 5941702 5941702 G C ANO2 Missense_Mutation p.S230W 0.40 deleterious(0.01) possibly_damaging(0.56) TCGA-E7-A7DV-01 12 72057029 72057029 G C ZFC3H1 Missense_Mutation p.S121W 0.29 deleterious(0.02) possibly_damaging(0.854) TCGA-E7-A7DV-01 12 72057153 72057153 G C ZFC3H1 Missense_Mutation p.Q80E 0.25 tolerated_low_confidence(0.56) benign(0.042) TCGA-E7-A7DV-01 12 72317058 72317058 G C TBC1D15 3'UTR 0.25 TCGA-E7-A7DV-01 12 7477157 7477157 C T ACSM4 Missense_Mutation p.S500L 0.25 deleterious(0.02) benign(0.262) TCGA-E7-A7DV-01 12 95907516 95907516 G C METAP2 Missense_Mutation p.E425Q 0.20 tolerated(0.36) benign(0.164) TCGA-E7-A7DV-01 13 114776713 114776713 C T RASA3 Silent p.T508T 0.29 TCGA-E7-A7DV-01 13 20580700 20580700 C G ZMYM2 Missense_Mutation p.Q496E 0.22 tolerated(0.24) benign(0.195) TCGA-E7-A7DV-01 13 23914228 23914228 G C SACS Missense_Mutation p.L1263V 0.26 probably_damaging(0.99) TCGA-E7-A7DV-01 13 25281209 25281209 C G ATP12A Missense_Mutation p.L746V 0.31 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 13 67800180 67800180 C T PCDH9 Missense_Mutation p.R798K 0.33 tolerated(0.95) benign(0.309) TCGA-E7-A7DV-01 13 77625965 77625965 G C MYCBP2 Missense_Mutation p.S4541C 0.43 probably_damaging(0.991) TCGA-E7-A7DV-01 14 105417963 105417963 C G AHNAK2 Silent p.L1275L 0.34 TCGA-E7-A7DV-01 14 106791159 106791159 C A IGHV3-30 Missense_Mutation p.W66L 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.901) TCGA-E7-A7DV-01 14 19378505 19378505 C T OR11H12 Silent p.I304I 0.26 TCGA-E7-A7DV-01 14 50790814 50790814 C G ATP5S Missense_Mutation p.I171M 0.37 deleterious(0) possibly_damaging(0.693) TCGA-E7-A7DV-01 14 65253218 65253218 C G SPTB Missense_Mutation p.R1155S 0.31 deleterious(0.01) benign(0.129) TCGA-E7-A7DV-01 14 86088193 86088193 G A FLRT2 Missense_Mutation p.R112K 0.32 tolerated(0.38) benign(0.019) TCGA-E7-A7DV-01 14 95579470 95579470 G C DICER1 Missense_Mutation p.L667V 0.08 tolerated(0.1) probably_damaging(0.999) TCGA-E7-A7DV-01 15 22867603 22867603 C T TUBGCP5 Silent p.F893F 0.09 TCGA-E7-A7DV-01 15 22872423 22872423 A G TUBGCP5 Silent p.E984E 0.19 TCGA-E7-A7DV-01 15 38643647 38643647 G C SPRED1 Missense_Mutation p.E373Q 0.16 deleterious(0.01) probably_damaging(1) TCGA-E7-A7DV-01 15 48805819 48805819 A G FBN1 Silent p.I505I 0.20 TCGA-E7-A7DV-01 15 53907989 53907989 C T WDR72 Nonsense_Mutation p.W805* 0.15 TCGA-E7-A7DV-01 15 66794390 66794390 C A RPL4 Intron 0.15 TCGA-E7-A7DV-01 15 73992052 73992052 C T CD276 Silent p.C24C 0.14 TCGA-E7-A7DV-01 15 78447601 78447601 G C IDH3A Missense_Mutation p.R25T 0.13 deleterious_low_confidence(0.03) benign(0.24) TCGA-E7-A7DV-01 16 1576705 1576705 C T IFT140 Missense_Mutation p.R831H 0.30 deleterious(0) possibly_damaging(0.901) TCGA-E7-A7DV-01 16 1576758 1576758 C T IFT140 Silent p.K813K 0.28 TCGA-E7-A7DV-01 16 15814781 15814781 A G MYH11 Missense_Mutation p.M1576T 0.22 benign(0.012) TCGA-E7-A7DV-01 16 19725652 19725652 C G KNOP1 Missense_Mutation p.E236Q 0.12 deleterious(0.03) possibly_damaging(0.836) TCGA-E7-A7DV-01 16 2239141 2239141 G C CASKIN1 Silent p.L168L 0.29 TCGA-E7-A7DV-01 16 2326726 2326726 G C ABCA3 Silent p.V1688V 0.17 TCGA-E7-A7DV-01 16 29810616 29810616 G A KIF22 Missense_Mutation p.R264H 0.19 tolerated(0.07) probably_damaging(1) TCGA-E7-A7DV-01 16 30510478 30510478 C T ITGAL Missense_Mutation p.S639L 0.20 tolerated(0.09) benign(0.063) TCGA-E7-A7DV-01 16 3085468 3085468 C T CCDC64B Silent p.P10P 0.22 TCGA-E7-A7DV-01 16 4029131 4029131 C T ADCY9 Missense_Mutation p.E889K 0.26 tolerated(0.27) benign(0.004) TCGA-E7-A7DV-01 16 4935222 4935222 C T PPL Missense_Mutation p.R1145H 0.13 tolerated(0.17) benign(0.052) TCGA-E7-A7DV-01 16 54967655 54967655 G C IRX5 Missense_Mutation p.G441A 0.21 deleterious(0.01) unknown(0) TCGA-E7-A7DV-01 16 68293106 68293106 C G PLA2G15 Nonsense_Mutation p.S262* 0.41 TCGA-E7-A7DV-01 16 69373439 69373439 G C COG8 Missense_Mutation p.T6S 0.15 deleterious_low_confidence(0.05) benign(0.069) TCGA-E7-A7DV-01 16 69786167 69786167 G A NOB1 Missense_Mutation p.H102Y 0.47 deleterious(0) possibly_damaging(0.883) TCGA-E7-A7DV-01 16 72993756 72993756 G A ZFHX3 Missense_Mutation p.H97Y 0.24 possibly_damaging(0.775) TCGA-E7-A7DV-01 16 76555204 76555204 C T CNTNAP4 Missense_Mutation p.R772C 0.27 deleterious(0.03) benign(0.052) TCGA-E7-A7DV-01 16 89759688 89759688 G A CDK10 Silent p.L164L 0.26 TCGA-E7-A7DV-01 16 89936029 89936029 G C SPIRE2 Missense_Mutation p.E621Q 0.26 tolerated(0.15) benign(0.396) TCGA-E7-A7DV-01 17 11998974 11998974 C T MAP2K4 Missense_Mutation p.P159L 0.12 tolerated(0.14) benign(0.019) TCGA-E7-A7DV-01 17 18918419 18918419 C G SLC5A10 Missense_Mutation p.S399C 0.46 deleterious(0) probably_damaging(0.986) TCGA-E7-A7DV-01 17 19091342 19091342 C T SNORD3A RNA 0.15 TCGA-E7-A7DV-01 17 19480815 19480815 C G SLC47A1 Missense_Mutation p.F554L 0.47 tolerated(0.69) benign(0) TCGA-E7-A7DV-01 17 19642385 19642385 C G ALDH3A1 Missense_Mutation p.E380D 0.20 deleterious(0.03) probably_damaging(0.989) TCGA-E7-A7DV-01 17 19642940 19642940 C G ALDH3A1 Missense_Mutation p.E333Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-E7-A7DV-01 17 26946934 26946934 G A KIAA0100 Missense_Mutation p.R1822W 0.10 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 17 35641768 35641768 G A ACACA Missense_Mutation p.R148C 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-E7-A7DV-01 17 39382934 39382934 C T KRTAP9-2 Nonsense_Mutation p.Q10* 0.09 TCGA-E7-A7DV-01 17 39521224 39521224 C T KRT33B Missense_Mutation p.E302K 0.12 deleterious(0) probably_damaging(0.98) TCGA-E7-A7DV-01 17 40009942 40009942 C T KLHL11 3'UTR 0.27 TCGA-E7-A7DV-01 17 40010621 40010621 C A KLHL11 Nonsense_Mutation p.E500* 0.20 TCGA-E7-A7DV-01 17 40817806 40817806 C T TUBG2 Silent p.F268F 0.21 TCGA-E7-A7DV-01 17 40841039 40841039 C G CNTNAP1 Silent p.L534L 0.07 TCGA-E7-A7DV-01 17 41341080 41341080 G C NBR1 Missense_Mutation p.D142H 0.24 tolerated(0.07) benign(0.322) TCGA-E7-A7DV-01 17 43515200 43515200 C T PLEKHM1 3'UTR 0.14 TCGA-E7-A7DV-01 17 49067207 49067207 C T SPAG9 Missense_Mutation p.D882N 0.22 tolerated(0.69) benign(0.09) TCGA-E7-A7DV-01 17 49067213 49067213 C T SPAG9 Missense_Mutation p.E880K 0.20 tolerated(1) benign(0.028) TCGA-E7-A7DV-01 17 54936024 54936024 G C DGKE Missense_Mutation p.E428Q 0.19 tolerated(0.06) benign(0.303) TCGA-E7-A7DV-01 17 57290944 57290944 G T SMG8 Missense_Mutation p.Q920H 0.09 tolerated(0.53) possibly_damaging(0.855) TCGA-E7-A7DV-01 17 59761073 59761073 C G BRIP1 Missense_Mutation p.D1112H 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.632) TCGA-E7-A7DV-01 17 62020268 62020268 G C SCN4A Silent p.L1402L 0.38 TCGA-E7-A7DV-01 17 63537676 63537676 C G AXIN2 Splice_Site p.X319_splice 0.14 TCGA-E7-A7DV-01 17 72305492 72305492 A C DNAI2 Missense_Mutation p.M438L 0.34 tolerated(1) benign(0) TCGA-E7-A7DV-01 17 73744972 73744972 G A ITGB4 Nonsense_Mutation p.W1054* 0.43 TCGA-E7-A7DV-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.44 deleterious(0) probably_damaging(0.985) TCGA-E7-A7DV-01 17 78022522 78022522 G A CCDC40 Missense_Mutation p.D273N 0.17 tolerated(0.08) possibly_damaging(0.448) TCGA-E7-A7DV-01 17 79173590 79173590 G A AZI1 Nonsense_Mutation p.Q318* 0.19 TCGA-E7-A7DV-01 17 80540720 80540720 C G FOXK2 Missense_Mutation p.S338C 0.10 tolerated(0.08) possibly_damaging(0.804) TCGA-E7-A7DV-01 18 2771570 2771570 G A SMCHD1 Missense_Mutation p.R1669Q 0.22 deleterious(0.02) benign(0.002) TCGA-E7-A7DV-01 18 3273062 3273062 G C MYL12B Missense_Mutation p.D56H 0.19 deleterious(0) possibly_damaging(0.468) TCGA-E7-A7DV-01 18 7949273 7949273 G C PTPRM Missense_Mutation p.R253P 0.38 tolerated(0.25) benign(0.318) TCGA-E7-A7DV-01 19 11492479 11492479 C G EPOR Missense_Mutation p.E158D 0.30 tolerated(0.24) benign(0.005) TCGA-E7-A7DV-01 19 11685900 11685900 C G ACP5 Missense_Mutation p.E301D 0.12 tolerated(0.22) benign(0.001) TCGA-E7-A7DV-01 19 12298176 12298176 G C ZNF136 Missense_Mutation p.R328T 0.19 deleterious(0.03) probably_damaging(0.956) TCGA-E7-A7DV-01 19 15290073 15290073 C T NOTCH3 Missense_Mutation p.E1161K 0.18 deleterious(0.04) probably_damaging(0.978) TCGA-E7-A7DV-01 19 20308138 20308138 G C ZNF486 Missense_Mutation p.E207Q 0.15 deleterious(0.03) possibly_damaging(0.5) TCGA-E7-A7DV-01 19 21608717 21608717 C T ZNF493 3'UTR 0.18 TCGA-E7-A7DV-01 19 21990879 21990879 C T ZNF43 Missense_Mutation p.E654K 0.16 tolerated(0.06) benign(0.152) TCGA-E7-A7DV-01 19 22154188 22154188 C G ZNF208 Missense_Mutation p.K1216N 0.09 deleterious(0.03) probably_damaging(0.942) TCGA-E7-A7DV-01 19 24010215 24010215 G C RPSAP58 Missense_Mutation p.Q84H 0.29 deleterious(0.05) benign(0.149) TCGA-E7-A7DV-01 19 3381829 3381829 G T NFIC Silent p.S50S 0.18 TCGA-E7-A7DV-01 19 38055669 38055669 C G ZNF571 Missense_Mutation p.G554A 0.36 deleterious(0) probably_damaging(0.988) TCGA-E7-A7DV-01 19 38055683 38055683 C G ZNF571 Silent p.L549L 0.35 TCGA-E7-A7DV-01 19 39398039 39398039 G A NFKBIB Missense_Mutation p.E237K 0.14 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 19 4357549 4357549 G C MPND Missense_Mutation p.K401N 0.23 tolerated(0.21) benign(0.065) TCGA-E7-A7DV-01 19 44570883 44570883 C G ZNF223 Nonsense_Mutation p.S301* 0.12 TCGA-E7-A7DV-01 19 44635201 44635202 AG - ZNF225 Frame_Shift_Del p.K146Tfs*3 0.12 TCGA-E7-A7DV-01 19 45811744 45811744 G A CKM Missense_Mutation p.H234Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 19 49838985 49838985 G C CD37 Silent p.L28L 0.13 TCGA-E7-A7DV-01 19 49952777 49952777 G A PIH1D1 Missense_Mutation p.R98C 0.09 deleterious(0) probably_damaging(0.997) TCGA-E7-A7DV-01 19 49952898 49952898 C G PIH1D1 Missense_Mutation p.K57N 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 19 50059898 50059898 G A NOSIP Silent p.R211R 0.47 TCGA-E7-A7DV-01 19 56466276 56466276 C T NLRP8 Silent p.L284L 0.39 TCGA-E7-A7DV-01 19 56552342 56552342 C T NLRP5 Silent p.L947L 0.58 TCGA-E7-A7DV-01 19 58018244 58018244 G C ZNF773 Missense_Mutation p.D261H 0.06 tolerated(0.35) benign(0.035) TCGA-E7-A7DV-01 19 7152811 7152811 G A INSR Silent p.I719I 0.19 TCGA-E7-A7DV-01 19 8321585 8321585 C G CERS4 Silent p.V201V 0.13 TCGA-E7-A7DV-01 1 100624880 100624880 C T LRRC39 Missense_Mutation p.R104K 0.32 tolerated(0.86) possibly_damaging(0.597) TCGA-E7-A7DV-01 1 10509981 10509981 A T CORT 5'UTR 0.31 TCGA-E7-A7DV-01 1 110121883 110121883 C G GNAI3 Missense_Mutation p.P121A 0.36 tolerated(0.29) benign(0) TCGA-E7-A7DV-01 1 11249969 11249969 C T ANGPTL7 Silent p.I111I 0.13 TCGA-E7-A7DV-01 1 114380970 114380970 G C PTPN22 Missense_Mutation p.S351C 0.16 deleterious(0.01) possibly_damaging(0.673) TCGA-E7-A7DV-01 1 11708669 11708669 G A FBXO2 3'UTR 0.30 TCGA-E7-A7DV-01 1 1230845 1230845 C T ACAP3 Missense_Mutation p.A599T 0.15 tolerated(0.28) benign(0.002) TCGA-E7-A7DV-01 1 14109250 14109250 C T PRDM2 Nonsense_Mutation p.Q1654* 0.31 TCGA-E7-A7DV-01 1 151552206 151552206 G C TUFT1 Missense_Mutation p.E336Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 1 153915441 153915441 G A DENND4B Silent p.I161I 0.45 TCGA-E7-A7DV-01 1 157773804 157773804 G T FCRL1 Missense_Mutation p.F50L 0.08 tolerated(1) benign(0.004) TCGA-E7-A7DV-01 1 158151442 158151442 A G CD1D Missense_Mutation p.I87V 0.43 tolerated(0.17) benign(0) TCGA-E7-A7DV-01 1 159166753 159166753 C T CADM3 Silent p.I319I 0.51 TCGA-E7-A7DV-01 1 161132413 161132413 G C USP21 Missense_Mutation p.D264H 0.12 deleterious(0) probably_damaging(0.979) TCGA-E7-A7DV-01 1 16731547 16731547 C G SPATA21 Missense_Mutation p.Q242H 0.45 tolerated(0.43) benign(0.109) TCGA-E7-A7DV-01 1 167805693 167805693 G C ADCY10 Missense_Mutation p.L1055V 0.16 tolerated(0.48) benign(0.02) TCGA-E7-A7DV-01 1 182812529 182812529 G A DHX9 Missense_Mutation p.R71Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 1 185987416 185987416 G A HMCN1 Missense_Mutation p.G1801D 0.40 probably_damaging(1) TCGA-E7-A7DV-01 1 186084434 186084434 G C HMCN1 Missense_Mutation p.V3817L 0.17 possibly_damaging(0.73) TCGA-E7-A7DV-01 1 186113377 186113377 G C HMCN1 Missense_Mutation p.R4666T 0.10 possibly_damaging(0.629) TCGA-E7-A7DV-01 1 186113378 186113378 A T HMCN1 Missense_Mutation p.R4666S 0.09 possibly_damaging(0.629) TCGA-E7-A7DV-01 1 196927143 196927143 G C CFHR2 Missense_Mutation p.E185Q 0.12 tolerated(1) benign(0.007) TCGA-E7-A7DV-01 1 202092043 202092043 C T GPR37L1 5'UTR 0.18 TCGA-E7-A7DV-01 1 202092623 202092623 C G GPR37L1 Missense_Mutation p.L178V 0.22 tolerated(0.16) probably_damaging(0.986) TCGA-E7-A7DV-01 1 233190095 233190095 C G PCNXL2 Missense_Mutation p.D1424H 0.14 deleterious(0) possibly_damaging(0.841) TCGA-E7-A7DV-01 1 236850036 236850036 C G ACTN2 Missense_Mutation p.I21M 0.33 tolerated_low_confidence(0.14) benign(0.002) TCGA-E7-A7DV-01 1 247836175 247836175 A T OR13G1 Missense_Mutation p.Y57N 0.17 deleterious(0) probably_damaging(0.998) TCGA-E7-A7DV-01 1 247902159 247902159 C G OR14K1 Silent p.L81L 0.15 TCGA-E7-A7DV-01 1 26107448 26107448 G C MAN1C1 Missense_Mutation p.E499Q 0.39 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 1 31423013 31423013 C G PUM1 Missense_Mutation p.Q939H 0.21 deleterious(0) possibly_damaging(0.844) TCGA-E7-A7DV-01 1 32154065 32154065 C T COL16A1 Intron 0.28 TCGA-E7-A7DV-01 1 32256678 32256678 C T SPOCD1 Silent p.L1059L 0.30 TCGA-E7-A7DV-01 1 32256720 32256720 C G SPOCD1 Missense_Mutation p.K1045N 0.35 deleterious(0.04) benign(0.152) TCGA-E7-A7DV-01 1 33625512 33625512 C T TRIM62 Missense_Mutation p.E180K 0.31 tolerated(0.67) benign(0.058) TCGA-E7-A7DV-01 1 36282512 36282512 C T AGO4 Missense_Mutation p.R17C 0.18 tolerated(0.06) possibly_damaging(0.776) TCGA-E7-A7DV-01 1 3649497 3649497 C T TP73 Missense_Mutation p.R589C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A7DV-01 1 39924141 39924141 G C MACF1 Missense_Mutation p.E5000Q 0.12 possibly_damaging(0.543) TCGA-E7-A7DV-01 1 40098333 40098333 C A HEYL Missense_Mutation p.K45N 0.15 deleterious(0.01) probably_damaging(1) TCGA-E7-A7DV-01 1 45213094 45213094 C G KIF2C Silent p.L68L 0.10 TCGA-E7-A7DV-01 1 47364641 47364641 C G CYP4Z2P RNA 0.37 TCGA-E7-A7DV-01 1 65120376 65120376 C T CACHD1 Silent p.L507L 0.35 TCGA-E7-A7DV-01 1 67724879 67724879 G C IL23R 3'UTR 0.25 TCGA-E7-A7DV-01 1 7309565 7309565 C A CAMTA1 Nonsense_Mutation p.S106* 0.14 TCGA-E7-A7DV-01 1 84403536 84403536 G A TTLL7 Missense_Mutation p.S296L 0.40 deleterious(0.04) possibly_damaging(0.867) TCGA-E7-A7DV-01 1 85573756 85573757 - C WDR63 Frame_Shift_Ins p.Q534Pfs*12 0.21 TCGA-E7-A7DV-01 1 91778938 91778938 G C HFM1 Nonsense_Mutation p.S1120* 0.27 TCGA-E7-A7DV-01 1 980774 980774 G A AGRN Missense_Mutation p.G803S 0.19 tolerated(0.1) probably_damaging(0.961) TCGA-E7-A7DV-01 20 1433742 1433742 T C NSFL1C Missense_Mutation p.D196G 0.12 deleterious(0.01) possibly_damaging(0.696) TCGA-E7-A7DV-01 20 16729046 16729046 G A OTOR 5'UTR 0.16 TCGA-E7-A7DV-01 20 2465219 2465219 G A ZNF343 Nonsense_Mutation p.Q130* 0.23 TCGA-E7-A7DV-01 20 29965112 29965112 G A DEFB118 3'Flank 0.22 TCGA-E7-A7DV-01 20 30753235 30753235 G A TM9SF4 Silent p.V639V 0.20 TCGA-E7-A7DV-01 20 31394052 31394052 C G DNMT3B Missense_Mutation p.S780W 0.23 deleterious(0) probably_damaging(0.997) TCGA-E7-A7DV-01 20 34317447 34317447 G C RBM39 Missense_Mutation p.S100C 0.07 deleterious(0.03) benign(0.334) TCGA-E7-A7DV-01 20 34770228 34770228 C T EPB41L1 Silent p.F175F 0.25 TCGA-E7-A7DV-01 20 3686634 3686634 C T SIGLEC1 Missense_Mutation p.E155K 0.36 tolerated(0.18) benign(0.314) TCGA-E7-A7DV-01 20 37353715 37353715 C G SLC32A1 Missense_Mutation p.I116M 0.22 deleterious(0) probably_damaging(0.946) TCGA-E7-A7DV-01 20 42225097 42225097 G C IFT52 Missense_Mutation p.E48Q 0.09 tolerated(0.06) possibly_damaging(0.87) TCGA-E7-A7DV-01 20 43653652 43653652 C G STK4 Missense_Mutation p.L396V 0.27 tolerated(0.08) benign(0.184) TCGA-E7-A7DV-01 20 43836925 43836925 G A SEMG1 Silent p.Q329Q 0.35 TCGA-E7-A7DV-01 20 62705589 62705589 C T RGS19 Missense_Mutation p.E124K 0.32 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 21 19725362 19725362 C G TMPRSS15 Missense_Mutation p.E343D 0.16 tolerated(0.11) benign(0.053) TCGA-E7-A7DV-01 22 35789530 35789530 G A HMOX1 Missense_Mutation p.R269Q 0.20 tolerated(0.18) benign(0.02) TCGA-E7-A7DV-01 22 36054800 36054800 C T APOL6 Silent p.L63L 0.19 TCGA-E7-A7DV-01 22 39530415 39530415 C T CBX7 Missense_Mutation p.E197K 0.29 tolerated(0.19) benign(0.05) TCGA-E7-A7DV-01 22 41564595 41564595 G A EP300 Missense_Mutation p.M1339I 0.38 probably_damaging(0.994) TCGA-E7-A7DV-01 22 41564739 41564739 G C EP300 Missense_Mutation p.G1347A 0.32 probably_damaging(0.966) TCGA-E7-A7DV-01 22 41564869 41564869 G C EP300 Missense_Mutation p.Q1390H 0.33 possibly_damaging(0.451) TCGA-E7-A7DV-01 22 41565601 41565601 G A EP300 Missense_Mutation p.E1423K 0.34 probably_damaging(0.952) TCGA-E7-A7DV-01 22 41565612 41565612 G A EP300 Silent p.K1426K 0.37 TCGA-E7-A7DV-01 22 41566456 41566456 G A EP300 Missense_Mutation p.D1445N 0.28 probably_damaging(1) TCGA-E7-A7DV-01 22 41569659 41569659 G T EP300 Missense_Mutation p.K1550N 0.29 probably_damaging(0.99) TCGA-E7-A7DV-01 22 41569698 41569698 G C EP300 Silent p.L1563L 0.29 TCGA-E7-A7DV-01 22 42906677 42906677 G C RRP7A 3'UTR 0.13 TCGA-E7-A7DV-01 22 50635970 50635970 G C TRABD Missense_Mutation p.Q208H 0.16 deleterious(0) probably_damaging(0.996) TCGA-E7-A7DV-01 22 50636272 50636272 G A TRABD Missense_Mutation p.C231Y 0.12 tolerated(0.06) possibly_damaging(0.53) TCGA-E7-A7DV-01 22 50636283 50636283 G T TRABD Missense_Mutation p.D235Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-E7-A7DV-01 2 101889508 101889508 C G CNOT11 3'Flank 0.20 TCGA-E7-A7DV-01 2 103095353 103095353 C T SLC9A4 Silent p.I104I 0.23 TCGA-E7-A7DV-01 2 106498229 106498229 G C NCK2 Silent p.V224V 0.12 TCGA-E7-A7DV-01 2 113832372 113832372 G A IL1F10 Missense_Mutation p.G64E 0.14 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 2 135596221 135596221 C T ACMSD 5'UTR 0.33 TCGA-E7-A7DV-01 2 135596226 135596226 C T ACMSD 5'UTR 0.32 TCGA-E7-A7DV-01 2 136566208 136566208 C T LCT Missense_Mutation p.D1237N 0.16 tolerated(0.13) benign(0.02) TCGA-E7-A7DV-01 2 158184023 158184023 C G ERMN 5'UTR 0.31 TCGA-E7-A7DV-01 2 166915199 166915199 C T SCN1A Splice_Site p.X89_splice 0.22 TCGA-E7-A7DV-01 2 175260318 175260318 C G CIR1 Missense_Mutation p.K11N 0.28 deleterious(0.02) unknown(0) TCGA-E7-A7DV-01 2 179428238 179428238 C T TTN Missense_Mutation p.E27541K 0.09 TCGA-E7-A7DV-01 2 179629318 179629318 G C TTN Silent p.V3308V 0.27 TCGA-E7-A7DV-01 2 196741323 196741323 G A DNAH7 Missense_Mutation p.S2021L 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-E7-A7DV-01 2 197172765 197172765 C G HECW2 Missense_Mutation p.D827H 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 2 209309551 209309551 C G PTH2R Silent p.L264L 0.12 TCGA-E7-A7DV-01 2 219883775 219883775 G C CCDC108 Missense_Mutation p.D1200E 0.12 tolerated(0.49) benign(0.106) TCGA-E7-A7DV-01 2 223797946 223797946 G A ACSL3 Missense_Mutation p.A599T 0.34 tolerated(0.4) probably_damaging(1) TCGA-E7-A7DV-01 2 234200868 234200868 G A ATG16L1 Missense_Mutation p.D509N 0.15 deleterious(0) possibly_damaging(0.745) TCGA-E7-A7DV-01 2 234358712 234358712 G C DGKD Missense_Mutation p.R658T 0.11 tolerated(0.33) benign(0.001) TCGA-E7-A7DV-01 2 236817393 236817393 G C AGAP1 Missense_Mutation p.Q389H 0.12 tolerated(0.28) probably_damaging(0.968) TCGA-E7-A7DV-01 2 241500314 241500314 C T DUSP28 Silent p.F71F 0.27 TCGA-E7-A7DV-01 2 26501592 26501592 G C HADHB Missense_Mutation p.D185H 0.12 tolerated(0.16) benign(0.409) TCGA-E7-A7DV-01 2 27248556 27248556 G A MAPRE3 Missense_Mutation p.R192Q 0.23 tolerated(0.31) benign(0.01) TCGA-E7-A7DV-01 2 27892155 27892155 G A SLC4A1AP Missense_Mutation p.E416K 0.26 deleterious(0) probably_damaging(0.999) TCGA-E7-A7DV-01 2 61118921 61118921 G A REL Silent p.E38E 0.32 TCGA-E7-A7DV-01 2 63217952 63217952 G C EHBP1 Missense_Mutation p.E975Q 0.31 deleterious(0.04) benign(0.009) TCGA-E7-A7DV-01 2 63223835 63223835 G C EHBP1 Missense_Mutation p.E1084Q 0.33 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 2 68753261 68753261 C G APLF Missense_Mutation p.Q231E 0.14 deleterious(0.03) benign(0.08) TCGA-E7-A7DV-01 2 70188017 70188017 C G ASPRV1 Silent p.L268L 0.31 TCGA-E7-A7DV-01 2 86737602 86737602 G A RNF103-CHMP3 Missense_Mutation p.A125V 0.27 deleterious(0.02) possibly_damaging(0.864) TCGA-E7-A7DV-01 2 8874829 8874829 C G KIDINS220 Missense_Mutation p.E1258Q 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-E7-A7DV-01 2 90078035 90078035 G C IGKV3D-20 Missense_Mutation p.L24F 0.25 deleterious(0) possibly_damaging(0.85) TCGA-E7-A7DV-01 2 98408979 98408979 C T TMEM131 Silent p.A1338A 0.48 TCGA-E7-A7DV-01 3 100976551 100976551 G A IMPG2 Silent p.L325L 0.13 TCGA-E7-A7DV-01 3 102187946 102187946 C G ZPLD1 Silent p.L316L 0.14 TCGA-E7-A7DV-01 3 121202402 121202402 G C POLQ Missense_Mutation p.S1934C 0.17 deleterious(0) possibly_damaging(0.873) TCGA-E7-A7DV-01 3 12618132 12618132 C G MKRN2 Missense_Mutation p.S287C 0.06 deleterious(0) probably_damaging(0.988) TCGA-E7-A7DV-01 3 12626636 12626636 G A RAF1 Silent p.I551I 0.19 TCGA-E7-A7DV-01 3 138669155 138669155 C T C3orf72 Missense_Mutation p.S90F 0.15 tolerated_low_confidence(0.15) benign(0) TCGA-E7-A7DV-01 3 160021733 160021733 C A IFT80 Missense_Mutation p.G374V 0.21 deleterious(0.02) possibly_damaging(0.886) TCGA-E7-A7DV-01 3 17418076 17418076 G C TBC1D5 Silent p.V214V 0.11 TCGA-E7-A7DV-01 3 176768372 176768372 C G TBL1XR1 Missense_Mutation p.D152H 0.29 deleterious(0.01) possibly_damaging(0.718) TCGA-E7-A7DV-01 3 182597294 182597294 G T ATP11B Missense_Mutation p.D755Y 0.26 tolerated(0.05) benign(0.34) TCGA-E7-A7DV-01 3 183029466 183029466 T G MCF2L2 Missense_Mutation p.N283T 0.10 deleterious(0.02) benign(0.045) TCGA-E7-A7DV-01 3 193385020 193385020 G C OPA1 Missense_Mutation p.K960N 0.07 tolerated(0.08) benign(0.434) TCGA-E7-A7DV-01 3 194080188 194080188 C T LRRC15 Missense_Mutation p.V535I 0.10 tolerated(0.46) benign(0.002) TCGA-E7-A7DV-01 3 24018793 24018793 G A NR1D2 Missense_Mutation p.M541I 0.17 tolerated(0.08) benign(0.046) TCGA-E7-A7DV-01 3 42956252 42956252 C G ZNF662 Missense_Mutation p.F255L 0.14 deleterious(0) probably_damaging(0.989) TCGA-E7-A7DV-01 3 42956289 42956289 C T ZNF662 Missense_Mutation p.H268Y 0.17 deleterious(0) possibly_damaging(0.745) TCGA-E7-A7DV-01 3 42956518 42956518 C A ZNF662 Missense_Mutation p.A344D 0.12 tolerated(0.51) possibly_damaging(0.621) TCGA-E7-A7DV-01 3 42956610 42956610 C T ZNF662 Nonsense_Mutation p.Q375* 0.19 TCGA-E7-A7DV-01 3 42956767 42956767 C A ZNF662 Missense_Mutation p.S427Y 0.20 tolerated(0.97) benign(0.006) TCGA-E7-A7DV-01 3 4354714 4354714 G A SETMAR Missense_Mutation p.D97N 0.42 tolerated_low_confidence(0.05) benign(0.244) TCGA-E7-A7DV-01 3 44846611 44846611 G C KIF15 Missense_Mutation p.E594Q 0.12 tolerated(0.08) benign(0.282) TCGA-E7-A7DV-01 3 48219361 48219361 C T CDC25A Missense_Mutation p.D223N 0.11 deleterious(0.02) benign(0.114) TCGA-E7-A7DV-01 3 48507909 48507909 G A TREX1 Missense_Mutation p.R7K 0.10 tolerated_low_confidence(1) unknown(0) TCGA-E7-A7DV-01 3 48507918 48507918 G C TREX1 Missense_Mutation p.R10T 0.10 tolerated_low_confidence(0.11) unknown(0) TCGA-E7-A7DV-01 3 48508315 48508315 G C TREX1 Silent p.L142L 0.17 TCGA-E7-A7DV-01 3 48508579 48508579 G C TREX1 Missense_Mutation p.K230N 0.34 tolerated(0.08) possibly_damaging(0.662) TCGA-E7-A7DV-01 3 48508893 48508893 G T TREX1 Missense_Mutation p.G335V 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.56) TCGA-E7-A7DV-01 3 48510489 48510489 G C SHISA5 3'UTR 0.09 TCGA-E7-A7DV-01 3 48510550 48510550 G A SHISA5 Missense_Mutation p.P227S 0.10 deleterious(0) possibly_damaging(0.857) TCGA-E7-A7DV-01 3 49756387 49756387 G T AMIGO3 Nonsense_Mutation p.S171* 0.14 TCGA-E7-A7DV-01 3 57509535 57509535 G C DNAH12 Missense_Mutation p.Q83E 0.17 tolerated(0.54) benign(0.009) TCGA-E7-A7DV-01 3 93605265 93605265 A G PROS1 Missense_Mutation p.L413P 0.13 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 3 9860389 9860389 C G TTLL3 Intron 0.13 TCGA-E7-A7DV-01 3 9959040 9959040 G A IL17RC Missense_Mutation p.R14Q 0.55 deleterious_low_confidence(0.01) benign(0.238) TCGA-E7-A7DV-01 4 110866376 110866376 G A EGF Silent p.L295L 0.29 TCGA-E7-A7DV-01 4 114421631 114421631 C T CAMK2D Missense_Mutation p.E341K 0.18 deleterious_low_confidence(0.04) benign(0.278) TCGA-E7-A7DV-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.33 deleterious(0.01) possibly_damaging(0.594) TCGA-E7-A7DV-01 4 20760486 20760486 C T KCNIP4 Missense_Mutation p.E106K 0.27 deleterious(0.02) benign(0.43) TCGA-E7-A7DV-01 4 5570310 5570310 G T EVC2 Missense_Mutation p.R1140S 0.21 tolerated(0.1) benign(0.26) TCGA-E7-A7DV-01 4 65155440 65155440 G A TECRL Missense_Mutation p.P274S 0.18 tolerated(0.14) benign(0.026) TCGA-E7-A7DV-01 4 68930641 68930641 C G TMPRSS11F Missense_Mutation p.W259C 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 4 71554831 71554831 G C UTP3 Missense_Mutation p.R146P 0.15 tolerated(0.2) benign(0.334) TCGA-E7-A7DV-01 4 74606430 74606430 C G IL8 Missense_Mutation p.L19V 0.30 tolerated(0.27) possibly_damaging(0.595) TCGA-E7-A7DV-01 4 74735632 74735632 C G CXCL1 Silent p.L78L 0.15 TCGA-E7-A7DV-01 4 75040350 75040350 G C MTHFD2L Missense_Mutation p.D91H 0.37 tolerated(0.09) probably_damaging(0.968) TCGA-E7-A7DV-01 4 77045829 77045829 G C NUP54 Silent p.L379L 0.23 TCGA-E7-A7DV-01 4 79410220 79410220 C G FRAS1 Missense_Mutation p.L2982V 0.22 possibly_damaging(0.902) TCGA-E7-A7DV-01 4 88415289 88415289 C G SPARCL1 Missense_Mutation p.K221N 0.16 deleterious(0.02) benign(0.035) TCGA-E7-A7DV-01 4 96256585 96256585 C G UNC5C Missense_Mutation p.D108H 0.13 tolerated(0.11) benign(0.002) TCGA-E7-A7DV-01 4 96761853 96761853 C T PDHA2 Silent p.N184N 0.08 TCGA-E7-A7DV-01 5 122718550 122718550 G C CEP120 Missense_Mutation p.L632V 0.09 tolerated(0.58) benign(0.001) TCGA-E7-A7DV-01 5 132535044 132535044 C G FSTL4 Missense_Mutation p.E758Q 0.13 tolerated(1) benign(0.002) TCGA-E7-A7DV-01 5 134050846 134050846 G A SEC24A Missense_Mutation p.D954N 0.15 deleterious(0.05) benign(0.002) TCGA-E7-A7DV-01 5 134117662 134117662 C G DDX46 Missense_Mutation p.Q311E 0.38 tolerated(0.78) benign(0.011) TCGA-E7-A7DV-01 5 134152222 134152222 G A DDX46 Missense_Mutation p.E847K 0.20 tolerated(0.36) benign(0.101) TCGA-E7-A7DV-01 5 13894861 13894861 G T DNAH5 Missense_Mutation p.H777N 0.19 benign(0.322) TCGA-E7-A7DV-01 5 140047879 140047879 C T WDR55 Silent p.L84L 0.33 TCGA-E7-A7DV-01 5 140048530 140048530 C G WDR55 Silent p.L205L 0.21 TCGA-E7-A7DV-01 5 141358302 141358302 G A RNF14 Silent p.L247L 0.12 TCGA-E7-A7DV-01 5 156946987 156946987 C G ADAM19 Missense_Mutation p.D154H 0.23 tolerated(0.11) benign(0.029) TCGA-E7-A7DV-01 5 180058714 180058714 G A FLT4 Silent p.I41I 0.37 TCGA-E7-A7DV-01 5 32789775 32789775 C A AC026703.1 Missense_Mutation p.L90I 0.24 possibly_damaging(0.567) TCGA-E7-A7DV-01 5 33938320 33938320 G A RXFP3 3'UTR 0.24 TCGA-E7-A7DV-01 5 36038078 36038078 C T UGT3A2 Silent p.Q372Q 0.29 TCGA-E7-A7DV-01 5 40999851 40999851 G A MROH2B Missense_Mutation p.L1505F 0.21 tolerated(0.09) benign(0.365) TCGA-E7-A7DV-01 5 73142257 73142257 C T ARHGEF28 Missense_Mutation p.S531F 0.12 deleterious(0) possibly_damaging(0.713) TCGA-E7-A7DV-01 5 79057633 79057633 G C CMYA5 Splice_Site p.X3754_splice 0.21 TCGA-E7-A7DV-01 6 10964018 10964018 C G SYCP2L Missense_Mutation p.F806L 0.19 tolerated(0.52) benign(0.001) TCGA-E7-A7DV-01 6 123039019 123039019 G A PKIB Missense_Mutation p.R34Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-E7-A7DV-01 6 128505661 128505661 C T PTPRK Missense_Mutation p.E360K 0.16 deleterious(0) probably_damaging(0.974) TCGA-E7-A7DV-01 6 132061509 132061509 G C ENPP3 Missense_Mutation p.E816Q 0.13 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 6 139222121 139222121 C T ECT2L Silent p.L817L 0.20 TCGA-E7-A7DV-01 6 144782440 144782440 G A UTRN Missense_Mutation p.D939N 0.18 tolerated(0.07) benign(0.011) TCGA-E7-A7DV-01 6 146207828 146207828 C T SHPRH Silent p.%3D 0.20 TCGA-E7-A7DV-01 6 167570931 167570931 G A GPR31 Missense_Mutation p.A130V 0.12 tolerated(0.16) benign(0.055) TCGA-E7-A7DV-01 6 22570051 22570051 G A HDGFL1 Missense_Mutation p.E83K 0.44 deleterious(0) probably_damaging(0.986) TCGA-E7-A7DV-01 6 27835177 27835177 G C HIST1H1B Nonsense_Mutation p.S44* 0.44 TCGA-E7-A7DV-01 6 30617444 30617444 C G C6orf136 Missense_Mutation p.P242R 0.05 deleterious_low_confidence(0.01) benign(0.111) TCGA-E7-A7DV-01 6 31496850 31496850 C T MCCD1 Missense_Mutation p.S20F 0.27 deleterious(0.04) possibly_damaging(0.686) TCGA-E7-A7DV-01 6 31660915 31660915 C T ABHD16A Missense_Mutation p.R172Q 0.33 tolerated(0.68) benign(0) TCGA-E7-A7DV-01 6 31670994 31670994 G C ABHD16A Missense_Mutation p.S22C 0.13 deleterious_low_confidence(0.05) benign(0.43) TCGA-E7-A7DV-01 6 31750904 31750904 G A VARS Silent p.F577F 0.14 TCGA-E7-A7DV-01 6 31914147 31914147 C G CFB Intron 0.22 TCGA-E7-A7DV-01 6 32905118 32905118 C G HLA-DMB Missense_Mutation p.K151N 0.31 deleterious(0.03) possibly_damaging(0.698) TCGA-E7-A7DV-01 6 35437166 35437166 C T RPL10A Missense_Mutation p.S57F 0.28 tolerated(0.36) benign(0.008) TCGA-E7-A7DV-01 6 36359608 36359608 A - PXT1 Frame_Shift_Del p.F115Sfs*84 0.28 TCGA-E7-A7DV-01 6 42819877 42819877 G A GLTSCR1L Silent p.K629K 0.14 TCGA-E7-A7DV-01 6 45881991 45881991 G C CLIC5 Missense_Mutation p.L347V 0.10 deleterious(0) probably_damaging(0.99) TCGA-E7-A7DV-01 6 52945872 52945872 G C FBXO9 Missense_Mutation p.E182Q 0.19 tolerated(0.05) benign(0.432) TCGA-E7-A7DV-01 6 6167705 6167705 C T F13A1 Missense_Mutation p.E632K 0.21 tolerated(1) benign(0) TCGA-E7-A7DV-01 6 71234582 71234582 G C FAM135A Missense_Mutation p.D599H 0.25 tolerated(0.08) benign(0.322) TCGA-E7-A7DV-01 6 74073364 74073364 G A KHDC3L Silent p.T145T 0.19 TCGA-E7-A7DV-01 6 75811769 75811769 C A COL12A1 Splice_Site p.X2806_splice 0.18 TCGA-E7-A7DV-01 6 76728533 76728533 C G IMPG1 Missense_Mutation p.E237Q 0.19 deleterious(0.01) probably_damaging(0.922) TCGA-E7-A7DV-01 6 79711644 79711644 G A PHIP Silent p.L617L 0.18 TCGA-E7-A7DV-01 6 80721190 80721190 C G TTK Nonsense_Mutation p.S218* 0.27 TCGA-E7-A7DV-01 6 90659886 90659886 C G BACH2 Intron 0.33 TCGA-E7-A7DV-01 6 91296610 91296610 C T MAP3K7 5'UTR 0.19 TCGA-E7-A7DV-01 7 100677277 100677277 T C MUC17 Silent p.Y860Y 0.26 TCGA-E7-A7DV-01 7 102462558 102462558 G T FBXL13 Silent p.I649I 0.26 TCGA-E7-A7DV-01 7 128119508 128119508 G A METTL2B Missense_Mutation p.D167N 0.17 tolerated(0.39) benign(0.016) TCGA-E7-A7DV-01 7 142458459 142458459 G A PRSS1 Missense_Mutation p.E32K 0.14 tolerated(0.97) benign(0) TCGA-E7-A7DV-01 7 142479962 142479962 G A PRSS3P2 RNA 0.38 TCGA-E7-A7DV-01 7 143884153 143884153 C G ARHGEF35 Missense_Mutation p.E442Q 0.16 tolerated(0.14) benign(0.133) TCGA-E7-A7DV-01 7 20784924 20784924 C G ABCB5 Missense_Mutation p.Q1098E 0.25 deleterious(0) possibly_damaging(0.833) TCGA-E7-A7DV-01 7 21628944 21628944 T C DNAH11 Missense_Mutation p.C698R 0.08 probably_damaging(0.996) TCGA-E7-A7DV-01 7 6094332 6094332 G C EIF2AK1 Missense_Mutation p.S41C 0.21 deleterious(0) probably_damaging(0.993) TCGA-E7-A7DV-01 7 91690733 91690733 G A AKAP9 Missense_Mutation p.E1921K 0.23 possibly_damaging(0.779) TCGA-E7-A7DV-01 7 99022754 99022754 C G ATP5J2-PTCD1 Missense_Mutation p.L516F 0.12 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 8 103287765 103287765 C G UBR5 Missense_Mutation p.R2238T 0.06 deleterious(0) possibly_damaging(0.769) TCGA-E7-A7DV-01 8 116616232 116616232 G A TRPS1 Missense_Mutation p.S655L 0.27 tolerated_low_confidence(0.38) benign(0.127) TCGA-E7-A7DV-01 8 143558508 143558508 G C BAI1 Missense_Mutation p.S364T 0.15 deleterious(0.03) benign(0.418) TCGA-E7-A7DV-01 8 144802889 144802889 G C MAPK15 Missense_Mutation p.D266H 0.16 deleterious(0.03) possibly_damaging(0.591) TCGA-E7-A7DV-01 8 144803008 144803008 G C MAPK15 Missense_Mutation p.Q305H 0.27 deleterious(0.04) possibly_damaging(0.8) TCGA-E7-A7DV-01 8 22460825 22460825 C G C8orf58 3'UTR 0.16 TCGA-E7-A7DV-01 8 41801321 41801321 G C KAT6A Missense_Mutation p.Q725E 0.09 benign(0.033) TCGA-E7-A7DV-01 8 77618443 77618443 C A ZFHX4 Missense_Mutation p.S707Y 0.09 possibly_damaging(0.781) TCGA-E7-A7DV-01 8 90990548 90990548 T C NBN Missense_Mutation p.I162V 0.14 deleterious(0) possibly_damaging(0.474) TCGA-E7-A7DV-01 9 115759886 115759886 G A ZNF883 RNA 0.50 TCGA-E7-A7DV-01 9 133936606 133936606 G C LAMC3 Missense_Mutation p.Q781H 0.43 deleterious(0) probably_damaging(0.991) TCGA-E7-A7DV-01 9 140157645 140157645 G T NELFB Nonsense_Mutation p.E252* 0.12 TCGA-E7-A7DV-01 9 140946603 140946603 G A CACNA1B Missense_Mutation p.R1257Q 0.25 deleterious(0) probably_damaging(1) TCGA-E7-A7DV-01 9 14841450 14841450 G A FREM1 Missense_Mutation p.P626S 0.50 tolerated(0.06) benign(0.064) TCGA-E7-A7DV-01 9 79259787 79259787 A G PRUNE2 Missense_Mutation p.S2866P 0.42 deleterious(0) benign(0.329) TCGA-E7-A7DV-01 9 79321077 79321077 G C PRUNE2 Missense_Mutation p.S2038C 0.23 tolerated(0.19) benign(0.002) TCGA-E7-A7DV-01 9 90254272 90254272 G C DAPK1 Missense_Mutation p.E143Q 0.09 deleterious(0.01) probably_damaging(0.976) TCGA-E7-A7DV-01 9 96233450 96233450 C T FAM120A Nonsense_Mutation p.Q168* 0.77 TCGA-E7-A7DV-01 X 128887212 128887212 C G XPNPEP2 Silent p.L365L 0.25 TCGA-E7-A7DV-01 X 131188743 131188743 G C MST4 Missense_Mutation p.D43H 0.42 tolerated(0.09) probably_damaging(0.999) TCGA-E7-A7DV-01 X 1325410 1325410 C A CRLF2 Nonsense_Mutation p.E89* 0.19 TCGA-E7-A7DV-01 X 148568781 148568781 G C IDS Intron 0.38 TCGA-E7-A7DV-01 X 150349251 150349251 C T GPR50 Missense_Mutation p.S399F 0.49 deleterious_low_confidence(0.04) benign(0.125) TCGA-E7-A7DV-01 X 153717249 153717249 G C SLC10A3 Missense_Mutation p.Q11E 0.62 tolerated_low_confidence(0.53) benign(0.009) TCGA-E7-A7DV-01 X 19389542 19389542 G A MAP3K15 Missense_Mutation p.S1072L 0.45 tolerated(0.32) possibly_damaging(0.721) TCGA-E7-A7DV-01 X 29959898 29959898 A T IL1RAPL1 Missense_Mutation p.E396D 0.23 tolerated(1) benign(0.018) TCGA-E7-A7DV-01 X 68725797 68725797 G A FAM155B Silent p.L224L 0.35 TCGA-E7-A7DV-01 X 70149567 70149567 G A SLC7A3 Missense_Mutation p.S94F 0.57 deleterious(0) probably_damaging(0.972) TCGA-E7-A7DV-01 X 8504983 8504983 C T KAL1 Missense_Mutation p.E484K 0.47 deleterious(0.05) probably_damaging(0.989) TCGA-E7-A7PW-01 10 1123867 1123867 G T WDR37 Silent p.S53S 0.29 TCGA-E7-A7PW-01 10 116593109 116593109 A G FAM160B1 Missense_Mutation p.Y81C 0.04 deleterious(0) probably_damaging(1) TCGA-E7-A7PW-01 10 64573172 64573172 C T EGR2 Missense_Mutation p.R409Q 0.26 deleterious(0) possibly_damaging(0.857) TCGA-E7-A7PW-01 10 7409681 7409681 G A SFMBT2 Silent p.D122D 0.03 TCGA-E7-A7PW-01 11 113295146 113295146 G A DRD2 Silent p.L76L 0.28 TCGA-E7-A7PW-01 11 19246349 19246349 G A E2F8 Silent p.A820A 0.05 TCGA-E7-A7PW-01 11 32949665 32949665 G A QSER1 Silent p.Q31Q 0.35 TCGA-E7-A7PW-01 11 4388724 4388724 G A OR52B4 Missense_Mutation p.R268C 0.20 deleterious(0.03) benign(0.032) TCGA-E7-A7PW-01 11 5905973 5905973 G T OR52E4 Missense_Mutation p.V151F 0.36 tolerated(0.11) benign(0.098) TCGA-E7-A7PW-01 11 62414839 62414839 C G INTS5 Missense_Mutation p.E905Q 0.62 tolerated(1) benign(0.001) TCGA-E7-A7PW-01 12 113568738 113568738 C T RASAL1 Missense_Mutation p.S25N 0.82 deleterious(0.01) benign(0.063) TCGA-E7-A7PW-01 12 118471999 118471999 G A WSB2 3'UTR 0.06 TCGA-E7-A7PW-01 12 124156667 124156667 G A TCTN2 Silent p.V85V 0.18 TCGA-E7-A7PW-01 12 20522887 20522887 C T PDE3A Silent p.T223T 0.06 TCGA-E7-A7PW-01 12 31435567 31435567 G C FAM60A 3'UTR 0.45 TCGA-E7-A7PW-01 12 49994064 49994064 G C FAM186B Silent p.L453L 0.93 TCGA-E7-A7PW-01 12 52695817 52695817 C T KRT86 Silent p.R39R 0.04 TCGA-E7-A7PW-01 12 55615694 55615694 G T OR10A7 Nonsense_Mutation p.E296* 0.23 TCGA-E7-A7PW-01 12 6424246 6424246 G C PLEKHG6 Missense_Mutation p.E124Q 0.04 tolerated(0.27) benign(0.018) TCGA-E7-A7PW-01 12 68642644 68642644 C A IL22 Nonsense_Mutation p.G159* 0.76 TCGA-E7-A7PW-01 13 35734101 35734101 G A NBEA Missense_Mutation p.E1265K 0.83 deleterious_low_confidence(0.04) possibly_damaging(0.576) TCGA-E7-A7PW-01 13 48951075 48951075 G C RB1 Missense_Mutation p.E413Q 0.83 tolerated(0.38) benign(0.101) TCGA-E7-A7PW-01 14 102483751 102483751 C G DYNC1H1 Nonsense_Mutation p.S2696* 0.54 TCGA-E7-A7PW-01 14 105417197 105417197 A C AHNAK2 Missense_Mutation p.S1531A 0.05 benign(0.155) TCGA-E7-A7PW-01 14 50101108 50101108 G A DNAAF2 Missense_Mutation p.R254C 0.17 deleterious(0) probably_damaging(0.938) TCGA-E7-A7PW-01 14 76549820 76549820 G T IFT43 Missense_Mutation p.W181L 0.29 deleterious(0) probably_damaging(0.991) TCGA-E7-A7PW-01 14 94004562 94004562 C G UNC79 Missense_Mutation p.I273M 0.32 deleterious(0) probably_damaging(0.988) TCGA-E7-A7PW-01 15 75014650 75014650 C T CYP1A1 Silent p.Q263Q 0.24 TCGA-E7-A7PW-01 15 81592438 81592438 C T IL16 Missense_Mutation p.P924L 0.25 tolerated(0.11) benign(0.003) TCGA-E7-A7PW-01 15 82519878 82519878 T C EFTUD1 Missense_Mutation p.I369V 0.55 tolerated(0.15) benign(0.002) TCGA-E7-A7PW-01 15 93521546 93521546 C T CHD2 Missense_Mutation p.S887F 0.39 deleterious(0) probably_damaging(1) TCGA-E7-A7PW-01 16 29675414 29675414 C A SPN Missense_Mutation p.A122E 0.13 tolerated(0.07) probably_damaging(0.932) TCGA-E7-A7PW-01 16 3786659 3786659 C T CREBBP Missense_Mutation p.D1518N 0.04 unknown(0) TCGA-E7-A7PW-01 16 67974104 67974112 GCCCACGCC - LCAT In_Frame_Del p.G340_G342del 0.20 TCGA-E7-A7PW-01 17 34073007 34073007 G T GAS2L2 Silent p.I503I 0.18 TCGA-E7-A7PW-01 17 3628727 3628727 C G GSG2 Missense_Mutation p.Q500E 0.84 tolerated(0.1) benign(0.006) TCGA-E7-A7PW-01 17 38140551 38140551 C G PSMD3 Missense_Mutation p.I75M 0.16 deleterious(0.02) benign(0.378) TCGA-E7-A7PW-01 17 66268801 66268801 C T SLC16A6 Missense_Mutation p.A162T 0.17 tolerated(0.07) probably_damaging(1) TCGA-E7-A7PW-01 17 7260006 7260006 C T TMEM95 3'UTR 0.29 TCGA-E7-A7PW-01 17 73872347 73872359 AGGAAGCTGACTG - TRIM47 Frame_Shift_Del p.S329Cfs*7 0.31 TCGA-E7-A7PW-01 18 23866325 23866325 G A TAF4B Silent p.V484V 0.89 TCGA-E7-A7PW-01 18 56202326 56202326 G A ALPK2 Missense_Mutation p.S1698L 0.55 tolerated(0.66) benign(0.001) TCGA-E7-A7PW-01 18 74074474 74074474 C T ZNF516 Silent p.V1157V 0.16 TCGA-E7-A7PW-01 19 1081917 1081917 C T HMHA1 Missense_Mutation p.S841L 0.38 tolerated(0.07) benign(0.031) TCGA-E7-A7PW-01 19 18888216 18888217 CT - CRTC1 3'UTR 0.41 TCGA-E7-A7PW-01 19 327209 327209 C T MIER2 Silent p.T139T 0.02 TCGA-E7-A7PW-01 19 34842462 34842462 C A KIAA0355 Missense_Mutation p.P957T 0.04 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-E7-A7PW-01 19 41250554 41250554 G A C19orf54 Missense_Mutation p.L143F 0.52 deleterious(0) probably_damaging(0.967) TCGA-E7-A7PW-01 19 42190994 42190994 C A CEACAM7 Missense_Mutation p.A75S 0.17 tolerated(0.93) benign(0.082) TCGA-E7-A7PW-01 19 54377239 54377239 C T MYADM Silent p.A152A 0.17 TCGA-E7-A7PW-01 19 56244843 56244843 G A NLRP9 Silent p.H118H 0.03 TCGA-E7-A7PW-01 19 58117641 58117641 C G ZNF530 Missense_Mutation p.Q250E 0.06 tolerated(0.34) benign(0.406) TCGA-E7-A7PW-01 19 6591032 6591032 C T CD70 5'UTR 0.18 TCGA-E7-A7PW-01 1 109807624 109807624 G C CELSR2 Missense_Mutation p.E1867Q 0.04 tolerated(0.14) benign(0.408) TCGA-E7-A7PW-01 1 110257751 110257751 G T GSTM5 Splice_Site p.X153_splice 0.60 TCGA-E7-A7PW-01 1 152187631 152187631 G A HRNR Silent p.R2158R 0.05 TCGA-E7-A7PW-01 1 156214491 156214491 C T PAQR6 Missense_Mutation p.R168K 0.26 deleterious_low_confidence(0.01) benign(0.002) TCGA-E7-A7PW-01 1 156262910 156262927 CCCTGGGGCACCCAGGGC - C1orf85 In_Frame_Del p.A377_G382del 0.33 TCGA-E7-A7PW-01 1 161518438 161518438 T C FCGR3A Missense_Mutation p.E67G 0.03 deleterious(0) benign(0.049) TCGA-E7-A7PW-01 1 165859512 165859512 C T UCK2 Silent p.V57V 0.50 TCGA-E7-A7PW-01 1 166819632 166819632 G T POGK Missense_Mutation p.A606S 0.06 tolerated_low_confidence(0.55) benign(0.017) TCGA-E7-A7PW-01 1 17316686 17316686 C A ATP13A2 Missense_Mutation p.R783L 0.52 tolerated(0.64) benign(0.009) TCGA-E7-A7PW-01 1 175324729 175324729 G T TNR Silent p.T1053T 0.08 TCGA-E7-A7PW-01 1 215807816 215807816 C T USH2A Silent p.P5094P 0.16 TCGA-E7-A7PW-01 1 237947385 237947385 G A RYR2 Missense_Mutation p.V4125I 0.19 possibly_damaging(0.49) TCGA-E7-A7PW-01 1 243349238 243349238 C T CEP170 Missense_Mutation p.R470K 0.23 tolerated_low_confidence(0.12) benign(0.005) TCGA-E7-A7PW-01 1 247875926 247875926 A G OR6F1 Silent p.A44A 0.03 TCGA-E7-A7PW-01 1 93826262 93826262 G C DR1 3'UTR 0.35 TCGA-E7-A7PW-01 20 33519217 33519217 C T GSS Missense_Mutation p.E345K 0.47 tolerated(0.06) benign(0.007) TCGA-E7-A7PW-01 20 47838083 47838083 C T DDX27 Missense_Mutation p.T94M 0.47 tolerated(0.13) benign(0.001) TCGA-E7-A7PW-01 20 61288369 61288369 C T SLCO4A1 Missense_Mutation p.A188V 0.16 deleterious(0.01) probably_damaging(0.941) TCGA-E7-A7PW-01 21 19732084 19732084 C A TMPRSS15 Missense_Mutation p.K290N 0.14 deleterious(0) probably_damaging(1) TCGA-E7-A7PW-01 22 19119272 19119272 C T TSSK2 Silent p.L120L 0.82 TCGA-E7-A7PW-01 2 153537848 153537848 T C PRPF40A Silent p.K116K 0.28 TCGA-E7-A7PW-01 2 170048404 170048404 C G LRP2 Missense_Mutation p.R2990S 0.30 benign(0.439) TCGA-E7-A7PW-01 2 170678532 170678532 C A METTL5 Missense_Mutation p.D49Y 0.20 deleterious(0) probably_damaging(0.916) TCGA-E7-A7PW-01 2 182395316 182395316 T C ITGA4 Silent p.S868S 0.56 TCGA-E7-A7PW-01 2 203420609 203420609 C T BMPR2 Nonsense_Mutation p.Q741* 0.18 TCGA-E7-A7PW-01 2 219602399 219602399 C G TTLL4 5'UTR 0.05 TCGA-E7-A7PW-01 2 228883790 228883790 C T SPHKAP Missense_Mutation p.E594K 0.28 tolerated(0.19) benign(0.005) TCGA-E7-A7PW-01 2 32819082 32819082 G C BIRC6 Missense_Mutation p.E4486Q 0.37 probably_damaging(0.99) TCGA-E7-A7PW-01 2 3425704 3425704 C T TRAPPC12 Missense_Mutation p.A406V 0.38 tolerated(0.18) benign(0.235) TCGA-E7-A7PW-01 2 54080967 54080967 G A GPR75 Silent p.I309I 0.26 TCGA-E7-A7PW-01 2 64189497 64189497 C A VPS54 Missense_Mutation p.M235I 0.39 tolerated(0.1) possibly_damaging(0.585) TCGA-E7-A7PW-01 2 64189563 64189563 C A VPS54 Silent p.L213L 0.33 TCGA-E7-A7PW-01 2 97483043 97483043 G A CNNM3 Silent p.Q343Q 0.33 TCGA-E7-A7PW-01 3 10084255 10084255 G C FANCD2 Missense_Mutation p.V266L 0.08 deleterious(0.02) benign(0.17) TCGA-E7-A7PW-01 3 100963554 100963554 G T IMPG2 Missense_Mutation p.P541T 0.19 tolerated(0.05) probably_damaging(0.987) TCGA-E7-A7PW-01 3 12434135 12434135 G A PPARG Missense_Mutation p.R168K 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-E7-A7PW-01 3 139074601 139074601 A C COPB2 3'Flank 0.09 TCGA-E7-A7PW-01 3 186501375 186501375 C T EIF4A2 5'UTR 0.44 TCGA-E7-A7PW-01 3 38139324 38139324 C A DLEC1 Missense_Mutation p.N885K 0.16 deleterious(0) probably_damaging(0.999) TCGA-E7-A7PW-01 3 48453412 48453412 C G PLXNB1 Missense_Mutation p.V1703L 0.16 deleterious(0) possibly_damaging(0.539) TCGA-E7-A7PW-01 3 49699404 49699404 G A BSN Missense_Mutation p.E3376K 0.42 unknown(0) TCGA-E7-A7PW-01 4 114294584 114294584 G A ANK2 Silent p.K3946K 0.38 TCGA-E7-A7PW-01 4 13603304 13603304 C T BOD1L1 Silent p.V1740V 0.54 TCGA-E7-A7PW-01 4 183601476 183601476 G A TENM3 Missense_Mutation p.G538E 0.09 deleterious(0) probably_damaging(0.972) TCGA-E7-A7PW-01 4 183713981 183713981 A C TENM3 Missense_Mutation p.K2052N 0.07 deleterious(0.01) possibly_damaging(0.788) TCGA-E7-A7PW-01 5 140033597 140033597 C T IK Missense_Mutation p.T160I 0.94 deleterious(0) probably_damaging(0.999) TCGA-E7-A7PW-01 5 142586868 142586868 C G ARHGAP26 Silent p.P698P 0.18 TCGA-E7-A7PW-01 5 158588322 158588322 C T RNF145 Silent p.T556T 0.88 TCGA-E7-A7PW-01 6 111409266 111409266 C T SLC16A10 Missense_Mutation p.S104F 0.52 deleterious(0.04) benign(0.038) TCGA-E7-A7PW-01 6 152527322 152527322 T C SYNE1 Missense_Mutation p.K7667R 0.25 benign(0.007) TCGA-E7-A7PW-01 6 27420188 27420188 G A ZNF184 Missense_Mutation p.H384Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-E7-A7PW-01 6 30691628 30691628 C G TUBB Silent p.L263L 0.04 TCGA-E7-A7PW-01 6 34392899 34392899 C G RPS10 Missense_Mutation p.E34Q 0.47 deleterious(0.03) possibly_damaging(0.724) TCGA-E7-A7PW-01 6 572642 572642 A C EXOC2 Missense_Mutation p.W441G 0.08 tolerated(0.18) possibly_damaging(0.901) TCGA-E7-A7PW-01 6 83848538 83848538 G A DOPEY1 Missense_Mutation p.E1593K 0.04 deleterious(0) probably_damaging(0.999) TCGA-E7-A7PW-01 7 111368397 111368397 T G DOCK4 Missense_Mutation p.N1945T 0.17 tolerated_low_confidence(0.25) benign(0.01) TCGA-E7-A7PW-01 7 140035200 140035200 C T SLC37A3 3'UTR 0.34 TCGA-E7-A7PW-01 7 142247186 142247186 C T TRBV7-3 Silent p.E90E 0.10 TCGA-E7-A7PW-01 7 149462144 149462144 C T ZNF467 Missense_Mutation p.G483S 0.31 deleterious(0.02) probably_damaging(1) TCGA-E7-A7PW-01 7 43846743 43846743 C T BLVRA Missense_Mutation p.S267F 0.34 deleterious(0.01) possibly_damaging(0.86) TCGA-E7-A7PW-01 7 44924288 44924288 C T PURB Silent p.P220P 0.34 TCGA-E7-A7PW-01 7 70256003 70256003 C T AUTS2 3'UTR 0.32 TCGA-E7-A7PW-01 8 118831994 118831994 G A EXT1 Missense_Mutation p.A486V 0.05 tolerated(0.92) benign(0.034) TCGA-E7-A7PW-01 8 18541300 18541300 G C PSD3 Intron 0.85 TCGA-E7-A7PW-01 8 18541472 18541472 G C PSD3 Intron 0.94 TCGA-E7-A7PW-01 8 69380958 69380958 C A C8orf34 Missense_Mutation p.N213K 0.27 deleterious(0.01) benign(0.381) TCGA-E7-A7PW-01 9 117093902 117093902 G A ORM2 Silent p.L128L 0.62 TCGA-E7-A7PW-01 9 134365922 134365922 C G PRRC2B Intron 0.60 TCGA-E7-A7PW-01 9 139836000 139836000 C T FBXW5 Silent p.S411S 0.25 TCGA-E7-A7PW-01 9 95272313 95272313 G A ECM2 Silent p.L392L 0.63 TCGA-E7-A7PW-01 X 24080530 24080530 T A EIF2S3 Intron 0.17 TCGA-E7-A7PW-01 X 35820557 35820557 G A MAGEB16 Missense_Mutation p.E82K 0.89 tolerated(1) benign(0.008) TCGA-E7-A7PW-01 X 44948987 44948987 G A KDM6A Splice_Site p.X1183_splice 0.97 TCGA-E7-A7XN-01 10 102056830 102056830 G C PKD2L1 Missense_Mutation p.F364L 0.12 tolerated(0.83) benign(0.032) TCGA-E7-A7XN-01 10 105561083 105561083 G A SH3PXD2A Missense_Mutation p.S37F 0.19 deleterious(0) possibly_damaging(0.684) TCGA-E7-A7XN-01 10 11060001 11060001 C G CELF2 5'UTR 0.25 TCGA-E7-A7XN-01 10 119768467 119768467 C G RAB11FIP2 3'UTR 0.29 TCGA-E7-A7XN-01 10 12077380 12077380 C G UPF2 Missense_Mutation p.D15H 0.19 deleterious_low_confidence(0) unknown(0) TCGA-E7-A7XN-01 10 12110991 12110991 C A DHTKD1 5'UTR 0.17 TCGA-E7-A7XN-01 10 123659496 123659496 C T ATE1 Intron 0.18 TCGA-E7-A7XN-01 10 129866424 129866424 C T PTPRE Missense_Mutation p.S294L 0.16 tolerated(0.22) benign(0.077) TCGA-E7-A7XN-01 10 129905047 129905047 G C MKI67 Nonsense_Mutation p.S1686* 0.17 TCGA-E7-A7XN-01 10 13151153 13151153 G A OPTN Missense_Mutation p.E11K 0.09 tolerated(0.08) benign(0.014) TCGA-E7-A7XN-01 10 135101807 135101807 G C TUBGCP2 Missense_Mutation p.I544M 0.10 deleterious(0) possibly_damaging(0.824) TCGA-E7-A7XN-01 10 15121001 15121001 C G ACBD7 Silent p.L17L 0.21 TCGA-E7-A7XN-01 10 17202364 17202364 C G TRDMT1 Missense_Mutation p.L133F 0.16 tolerated(0.07) benign(0.432) TCGA-E7-A7XN-01 10 20568701 20568701 G A PLXDC2 Missense_Mutation p.E515K 0.13 deleterious(0) probably_damaging(0.998) TCGA-E7-A7XN-01 10 29821774 29821774 C T SVIL Missense_Mutation p.E508K 0.15 deleterious(0.04) benign(0.009) TCGA-E7-A7XN-01 10 30629316 30629316 G T MTPAP Missense_Mutation p.H132N 0.16 tolerated(0.31) benign(0.039) TCGA-E7-A7XN-01 10 33000622 33000622 G A C10ORF68 Missense_Mutation p.E152K 0.15 tolerated(0.99) possibly_damaging(0.771) TCGA-E7-A7XN-01 10 33543003 33543003 C T NRP1 Missense_Mutation p.E312K 0.11 tolerated(0.11) probably_damaging(0.999) TCGA-E7-A7XN-01 10 43650868 43650868 G C CSGALNACT2 Missense_Mutation p.E91Q 0.16 tolerated(0.31) possibly_damaging(0.85) TCGA-E7-A7XN-01 10 45499194 45499194 C T ZNF22 Silent p.L126L 0.11 TCGA-E7-A7XN-01 10 48388817 48388817 T A RBP3 Silent p.T687T 0.17 TCGA-E7-A7XN-01 10 5442874 5442874 G C TUBAL3 Missense_Mutation p.F60L 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-E7-A7XN-01 10 55568528 55568528 G A PCDH15 Missense_Mutation p.A695V 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-E7-A7XN-01 10 5808201 5808201 C T GDI2 Intron 0.12 TCGA-E7-A7XN-01 10 58119876 58119876 G C ZWINT Silent p.L53L 0.23 TCGA-E7-A7XN-01 10 6152029 6152029 G A RBM17 Missense_Mutation p.E215K 0.15 tolerated(0.06) benign(0.046) TCGA-E7-A7XN-01 10 61894090 61894090 C T ANK3 Missense_Mutation p.R927K 0.18 benign(0.118) TCGA-E7-A7XN-01 10 61965585 61965585 G A ANK3 Silent p.L420L 0.14 TCGA-E7-A7XN-01 10 62648858 62648858 C G RHOBTB1 Missense_Mutation p.V190L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A7XN-01 10 67748462 67748462 C G CTNNA3 Missense_Mutation p.Q751H 0.15 deleterious(0.04) unknown(0) TCGA-E7-A7XN-01 10 70105551 70105551 G A RUFY2 Nonsense_Mutation p.Q634* 0.15 TCGA-E7-A7XN-01 10 70105566 70105566 G A RUFY2 Missense_Mutation p.H629Y 0.13 tolerated(0.24) benign(0.074) TCGA-E7-A7XN-01 10 70451365 70451365 G C TET1 Missense_Mutation p.E2069Q 0.17 tolerated(0.06) possibly_damaging(0.729) TCGA-E7-A7XN-01 10 71166837 71166837 C T TACR2 Intron 0.20 TCGA-E7-A7XN-01 10 7327912 7327912 G C SFMBT2 Missense_Mutation p.I147M 0.16 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 10 74644105 74644105 G C MCU Missense_Mutation p.E315Q 0.16 tolerated(0.08) benign(0.06) TCGA-E7-A7XN-01 10 75236954 75236954 C T PPP3CB Intron 0.12 TCGA-E7-A7XN-01 10 75898117 75898117 G T AP3M1 Silent p.L7L 0.18 TCGA-E7-A7XN-01 10 7621728 7621728 G A ITIH5 Nonsense_Mutation p.Q470* 0.15 TCGA-E7-A7XN-01 10 85972124 85972124 G C CDHR1 Missense_Mutation p.Q581H 0.22 tolerated(0.52) probably_damaging(0.961) TCGA-E7-A7XN-01 10 866764 866764 C G LARP4B Silent p.R502R 0.13 TCGA-E7-A7XN-01 10 90698141 90698141 G C ACTA2 Intron 0.27 TCGA-E7-A7XN-01 10 92662989 92662989 G C RPP30 Missense_Mutation p.Q313H 0.19 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-E7-A7XN-01 11 100933355 100933355 G C PGR Missense_Mutation p.Q679E 0.14 tolerated(0.1) possibly_damaging(0.713) TCGA-E7-A7XN-01 11 102239153 102239153 C G BIRC2 Missense_Mutation p.Q414E 0.18 deleterious(0) benign(0.403) TCGA-E7-A7XN-01 11 103907428 103907428 G C DDI1 5'UTR 0.20 TCGA-E7-A7XN-01 11 107965541 107965541 G A CUL5 Missense_Mutation p.D524N 0.16 deleterious(0.01) probably_damaging(0.951) TCGA-E7-A7XN-01 11 110451029 110451029 C G ARHGAP20 Missense_Mutation p.E881Q 0.14 tolerated(0.14) benign(0.064) TCGA-E7-A7XN-01 11 111573969 111573969 C G SIK2 Missense_Mutation p.S257C 0.18 deleterious(0.01) possibly_damaging(0.802) TCGA-E7-A7XN-01 11 115047241 115047241 C T CADM1 Missense_Mutation p.E428K 0.16 deleterious(0) probably_damaging(0.954) TCGA-E7-A7XN-01 11 116691425 116691425 G C APOA4 3'UTR 0.24 TCGA-E7-A7XN-01 11 117258004 117258004 G C CEP164 Missense_Mutation p.E604Q 0.13 deleterious(0.03) probably_damaging(0.925) TCGA-E7-A7XN-01 11 117342738 117342738 G C DSCAML1 Missense_Mutation p.F993L 0.08 tolerated(0.42) benign(0.005) TCGA-E7-A7XN-01 11 117789424 117789424 G T TMPRSS13 Missense_Mutation p.P51T 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-E7-A7XN-01 11 118344991 118344991 G C KMT2A Missense_Mutation p.K1039N 0.15 probably_damaging(0.983) TCGA-E7-A7XN-01 11 118377246 118377246 C T KMT2A Nonsense_Mutation p.Q3547* 0.21 TCGA-E7-A7XN-01 11 118625475 118625475 C G DDX6 Missense_Mutation p.K466N 0.17 deleterious(0.01) benign(0.081) TCGA-E7-A7XN-01 11 119510591 119510591 C T RP11-196E1.3 RNA 0.19 TCGA-E7-A7XN-01 11 11964413 11964413 G C USP47 Missense_Mutation p.D881H 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-E7-A7XN-01 11 120957546 120957546 G C TBCEL Missense_Mutation p.R339T 0.12 tolerated(0.43) benign(0.033) TCGA-E7-A7XN-01 11 121970541 121970541 G A MIR125B1 RNA 0.26 TCGA-E7-A7XN-01 11 122669698 122669698 C T UBASH3B Missense_Mutation p.S469F 0.16 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 11 125513755 125513755 C G CHEK1 Missense_Mutation p.Q295E 0.20 tolerated(1) benign(0.007) TCGA-E7-A7XN-01 11 125763587 125763587 G C PUS3 3'UTR 0.15 TCGA-E7-A7XN-01 11 128360415 128360415 G C ETS1 Missense_Mutation p.Q91E 0.17 deleterious(0.04) possibly_damaging(0.875) TCGA-E7-A7XN-01 11 14899843 14899843 C T CYP2R1 Missense_Mutation p.G444E 0.22 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 11 16007851 16007851 C T SOX6 Silent p.P674P 0.14 TCGA-E7-A7XN-01 11 18505487 18505487 C T TSG101 Missense_Mutation p.R258Q 0.05 tolerated(0.07) possibly_damaging(0.544) TCGA-E7-A7XN-01 11 18751345 18751345 G A PTPN5 Silent p.G450G 0.11 TCGA-E7-A7XN-01 11 20075648 20075648 C A NAV2 Missense_Mutation p.R1525S 0.17 tolerated(0.21) probably_damaging(0.996) TCGA-E7-A7XN-01 11 21135215 21135215 G C NELL1 Missense_Mutation p.D461H 0.17 tolerated(0.08) probably_damaging(0.928) TCGA-E7-A7XN-01 11 2426092 2426092 C A TRPM5 3'UTR 0.19 TCGA-E7-A7XN-01 11 24927548 24927548 G C LUZP2 Missense_Mutation p.L136F 0.10 deleterious(0) probably_damaging(0.996) TCGA-E7-A7XN-01 11 26587440 26587440 G A MUC15 Missense_Mutation p.S16F 0.17 tolerated_low_confidence(0.06) benign(0) TCGA-E7-A7XN-01 11 27680080 27680080 G A BDNF Missense_Mutation p.S93L 0.17 tolerated(0.05) possibly_damaging(0.765) TCGA-E7-A7XN-01 11 32118817 32118817 G A RCN1 Missense_Mutation p.D128N 0.15 tolerated(0.49) benign(0.178) TCGA-E7-A7XN-01 11 32615485 32615485 G C EIF3M Missense_Mutation p.D203H 0.12 deleterious(0) possibly_damaging(0.623) TCGA-E7-A7XN-01 11 33589665 33589665 G A KIAA1549L Silent p.Q1077Q 0.28 TCGA-E7-A7XN-01 11 34912058 34912058 C T APIP Missense_Mutation p.R67Q 0.12 tolerated(0.07) benign(0.064) TCGA-E7-A7XN-01 11 35457448 35457448 C G PAMR1 Intron 0.22 TCGA-E7-A7XN-01 11 36250936 36250936 G C LDLRAD3 Missense_Mutation p.E343Q 0.13 deleterious_low_confidence(0.01) benign(0.018) TCGA-E7-A7XN-01 11 3838631 3838631 G A PGAP2 Missense_Mutation p.D72N 0.18 deleterious(0.02) benign(0.142) TCGA-E7-A7XN-01 11 46563643 46563643 C T AMBRA1 Missense_Mutation p.E552K 0.20 tolerated_low_confidence(0.06) benign(0.302) TCGA-E7-A7XN-01 11 48327898 48327898 C G OR4S1 Missense_Mutation p.L42V 0.13 deleterious(0.02) benign(0.136) TCGA-E7-A7XN-01 11 48327995 48327995 C G OR4S1 Missense_Mutation p.T74S 0.09 tolerated(0.3) benign(0.01) TCGA-E7-A7XN-01 11 489482 489482 C T PTDSS2 Missense_Mutation p.R313C 0.17 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 11 4936549 4936549 G A OR51G2 Silent p.L115L 0.12 TCGA-E7-A7XN-01 11 4967560 4967560 G A OR51A4 Silent p.I257I 0.06 TCGA-E7-A7XN-01 11 5080205 5080205 G C OR52E2 Missense_Mutation p.S218C 0.20 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 11 56409376 56409376 G A OR5AP2 Silent p.I180I 0.18 TCGA-E7-A7XN-01 11 56409796 56409796 G C OR5AP2 Missense_Mutation p.I40M 0.15 deleterious(0.04) possibly_damaging(0.757) TCGA-E7-A7XN-01 11 57982693 57982693 C T OR1S1 Silent p.V159V 0.16 TCGA-E7-A7XN-01 11 58384940 58384940 C T ZFP91 Missense_Mutation p.L492F 0.22 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-E7-A7XN-01 11 58723231 58723231 G A GLYATL1 Missense_Mutation p.E245K 0.20 tolerated(0.07) probably_damaging(0.976) TCGA-E7-A7XN-01 11 58956681 58956681 C T DTX4 Silent p.L348L 0.18 TCGA-E7-A7XN-01 11 60310034 60310034 G C MS4A13 Missense_Mutation p.E149Q 0.09 deleterious_low_confidence(0.01) benign(0.174) TCGA-E7-A7XN-01 11 60889221 60889221 T A CD5 Missense_Mutation p.V315E 0.25 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 11 61404601 61404601 C T RPLP0P2 RNA 0.08 TCGA-E7-A7XN-01 11 61508640 61508640 G A DAGLA Missense_Mutation p.E664K 0.20 tolerated(0.07) benign(0.067) TCGA-E7-A7XN-01 11 62293287 62293287 C G AHNAK Missense_Mutation p.E2868Q 0.16 benign(0.276) TCGA-E7-A7XN-01 11 62297007 62297007 C T AHNAK Missense_Mutation p.D1628N 0.12 probably_damaging(0.954) TCGA-E7-A7XN-01 11 62300842 62300842 G C AHNAK Missense_Mutation p.I349M 0.13 possibly_damaging(0.875) TCGA-E7-A7XN-01 11 62364862 62364862 G C MTA2 Missense_Mutation p.L207V 0.17 deleterious(0.02) benign(0.219) TCGA-E7-A7XN-01 11 62437203 62437203 G C C11orf48 Missense_Mutation p.L75V 0.08 deleterious_low_confidence(0.01) benign(0.008) TCGA-E7-A7XN-01 11 62437529 62437529 G A C11orf48 5'UTR 0.29 TCGA-E7-A7XN-01 11 62437540 62437540 G A C11orf48 5'UTR 0.26 TCGA-E7-A7XN-01 11 62437545 62437545 G A C11orf48 5'UTR 0.26 TCGA-E7-A7XN-01 11 62439220 62439220 G A C11orf83 Translation_Start_Site p.M1? 0.13 deleterious(0) benign(0.043) TCGA-E7-A7XN-01 11 62455473 62455473 C G LRRN4CL Missense_Mutation p.E170Q 0.13 tolerated(0.14) possibly_damaging(0.454) TCGA-E7-A7XN-01 11 62620497 62620497 C T SLC3A2 5'Flank 0.19 TCGA-E7-A7XN-01 11 63487722 63487722 C T RTN3 Missense_Mutation p.S583L 0.16 deleterious(0.04) possibly_damaging(0.642) TCGA-E7-A7XN-01 11 63681768 63681768 C T RCOR2 Missense_Mutation p.E214K 0.17 deleterious(0.04) possibly_damaging(0.787) TCGA-E7-A7XN-01 11 63682398 63682398 C G RCOR2 Missense_Mutation p.E98D 0.15 tolerated(0.11) benign(0.439) TCGA-E7-A7XN-01 11 63682424 63682424 C G RCOR2 Missense_Mutation p.D90H 0.16 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 11 63967681 63967681 C G STIP1 Missense_Mutation p.I387M 0.15 deleterious(0) possibly_damaging(0.791) TCGA-E7-A7XN-01 11 63988079 63988079 G A FERMT3 Missense_Mutation p.E499K 0.26 tolerated(0.62) benign(0.422) TCGA-E7-A7XN-01 11 64010692 64010692 G A FKBP2 Missense_Mutation p.E65K 0.15 tolerated(0.59) possibly_damaging(0.58) TCGA-E7-A7XN-01 11 64108940 64108940 C T CCDC88B Silent p.L165L 0.09 TCGA-E7-A7XN-01 11 64453336 64453336 C T NRXN2 Missense_Mutation p.D312N 0.14 deleterious(0) benign(0.071) TCGA-E7-A7XN-01 11 65061653 65061653 C T POLA2 Missense_Mutation p.S425L 0.15 deleterious(0) probably_damaging(0.992) TCGA-E7-A7XN-01 11 66062581 66062581 C G TMEM151A Missense_Mutation p.F288L 0.25 deleterious(0) possibly_damaging(0.716) TCGA-E7-A7XN-01 11 66113586 66113586 C G B3GNT1 Missense_Mutation p.K394N 0.14 deleterious(0.02) possibly_damaging(0.736) TCGA-E7-A7XN-01 11 66384488 66384488 C G RBM14-RBM4 Missense_Mutation p.F99L 0.11 deleterious(0.01) possibly_damaging(0.842) TCGA-E7-A7XN-01 11 68157442 68157442 C T LRP5 Silent p.L502L 0.24 TCGA-E7-A7XN-01 11 68483325 68483325 C T MTL5 Missense_Mutation p.E334K 0.13 tolerated(0.07) benign(0.424) TCGA-E7-A7XN-01 11 7110384 7110384 C T RBMXL2 Silent p.F11F 0.21 TCGA-E7-A7XN-01 11 72945369 72945369 C G P2RY2 Silent p.L55L 0.15 TCGA-E7-A7XN-01 11 73021511 73021511 G A ARHGEF17 Missense_Mutation p.D610N 0.16 tolerated_low_confidence(0.05) possibly_damaging(0.563) TCGA-E7-A7XN-01 11 73021889 73021889 G A ARHGEF17 Missense_Mutation p.D736N 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E7-A7XN-01 11 73022186 73022186 G A ARHGEF17 Missense_Mutation p.G835R 0.11 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-E7-A7XN-01 11 73803494 73803494 C G C2CD3 Missense_Mutation p.E1162Q 0.18 deleterious(0.02) possibly_damaging(0.743) TCGA-E7-A7XN-01 11 74688053 74688053 C T SPCS2 Missense_Mutation p.H216Y 0.19 tolerated(0.17) probably_damaging(0.993) TCGA-E7-A7XN-01 11 77911851 77911851 C G USP35 Missense_Mutation p.I398M 0.11 deleterious(0) unknown(0) TCGA-E7-A7XN-01 11 82909636 82909636 C A ANKRD42 Intron 0.27 TCGA-E7-A7XN-01 11 86097120 86097120 C G CCDC81 Nonsense_Mutation p.S36* 0.07 TCGA-E7-A7XN-01 11 883271 883271 C G CHID1 Missense_Mutation p.R304P 0.12 deleterious(0.02) probably_damaging(0.947) TCGA-E7-A7XN-01 11 89956126 89956126 C G CHORDC1 5'UTR 0.24 TCGA-E7-A7XN-01 11 9080890 9080890 C T SCUBE2 Silent p.K350K 0.18 TCGA-E7-A7XN-01 11 92088162 92088162 G A FAT3 Missense_Mutation p.D962N 0.12 probably_damaging(1) TCGA-E7-A7XN-01 11 94212886 94212886 G A MRE11A Missense_Mutation p.S119L 0.22 deleterious(0) probably_damaging(0.962) TCGA-E7-A7XN-01 12 100551506 100551506 G A AC010203.1 5'Flank 0.20 TCGA-E7-A7XN-01 12 102506004 102506004 C G NUP37 Missense_Mutation p.E55Q 0.16 deleterious(0.02) benign(0.16) TCGA-E7-A7XN-01 12 1025437 1025437 G C RAD52 Intron 0.22 TCGA-E7-A7XN-01 12 104121065 104121065 G C STAB2 Silent p.L1624L 0.14 TCGA-E7-A7XN-01 12 108985794 108985794 C T TMEM119 Silent p.Q122Q 0.17 TCGA-E7-A7XN-01 12 110784074 110784074 G C ATP2A2 Silent p.V976V 0.13 TCGA-E7-A7XN-01 12 110969422 110969422 C T RAD9B Silent p.F426F 0.12 TCGA-E7-A7XN-01 12 112467399 112467399 G A NAA25 Missense_Mutation p.S952L 0.22 deleterious(0) benign(0.424) TCGA-E7-A7XN-01 12 113703991 113703991 G A TPCN1 Missense_Mutation p.E154K 0.15 tolerated(0.07) benign(0.072) TCGA-E7-A7XN-01 12 12279758 12279758 G C LRP6 Missense_Mutation p.I1393M 0.12 deleterious(0.02) benign(0.163) TCGA-E7-A7XN-01 12 122958430 122958430 C T ZCCHC8 Missense_Mutation p.E580K 0.13 deleterious(0.04) benign(0.041) TCGA-E7-A7XN-01 12 124298405 124298405 C G DNAH10 Silent p.L1124L 0.18 TCGA-E7-A7XN-01 12 124382423 124382423 G C DNAH10 Missense_Mutation p.L3011F 0.16 possibly_damaging(0.887) TCGA-E7-A7XN-01 12 124826499 124826499 G C NCOR2 Missense_Mutation p.I1686M 0.08 probably_damaging(0.997) TCGA-E7-A7XN-01 12 1289715 1289715 C G ERC1 Missense_Mutation p.L583V 0.18 deleterious(0.03) benign(0.313) TCGA-E7-A7XN-01 12 132426504 132426504 C A PUS1 Silent p.L404L 0.25 TCGA-E7-A7XN-01 12 132589708 132589708 C G EP400NL Missense_Mutation p.F249L 0.14 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-E7-A7XN-01 12 132632648 132632648 G A NOC4L Silent p.L245L 0.21 TCGA-E7-A7XN-01 12 133281207 133281207 C T PXMP2 Silent p.F174F 0.18 TCGA-E7-A7XN-01 12 16052899 16052899 C T STRAP Silent p.L279L 0.14 TCGA-E7-A7XN-01 12 1748930 1748930 G C WNT5B Missense_Mutation p.E137Q 0.19 tolerated(0.33) possibly_damaging(0.783) TCGA-E7-A7XN-01 12 18435561 18435561 C T PIK3C2G Silent p.F182F 0.12 TCGA-E7-A7XN-01 12 1940420 1940420 G C LRTM2 Missense_Mutation p.R129S 0.17 tolerated(0.42) benign(0.289) TCGA-E7-A7XN-01 12 23793809 23793809 C T SOX5 Silent p.L318L 0.12 TCGA-E7-A7XN-01 12 26553145 26553145 G T ITPR2 Silent p.L2482L 0.18 TCGA-E7-A7XN-01 12 26878699 26878699 C G ITPR2 Splice_Site p.X55_splice 0.17 TCGA-E7-A7XN-01 12 32487456 32487456 G A BICD1 Missense_Mutation p.E703K 0.19 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 12 427339 427339 C T KDM5A Missense_Mutation p.E944K 0.20 tolerated(0.46) benign(0.05) TCGA-E7-A7XN-01 12 443421 443421 G C KDM5A Missense_Mutation p.I492M 0.17 deleterious(0) probably_damaging(0.996) TCGA-E7-A7XN-01 12 475238 475238 G A KDM5A Silent p.V133V 0.16 TCGA-E7-A7XN-01 12 49170016 49170016 G A ADCY6 Silent p.L551L 0.12 TCGA-E7-A7XN-01 12 49219263 49219263 G C CACNB3 Missense_Mutation p.R207T 0.11 deleterious(0) probably_damaging(0.996) TCGA-E7-A7XN-01 12 49888605 49888605 C G SPATS2 Missense_Mutation p.Q116E 0.13 tolerated(0.81) benign(0.01) TCGA-E7-A7XN-01 12 5020817 5020817 C T KCNA1 Silent p.A91A 0.16 TCGA-E7-A7XN-01 12 51511519 51511519 C G TFCP2 Missense_Mutation p.E96Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-E7-A7XN-01 12 51707673 51707673 C T BIN2 Silent p.L32L 0.13 TCGA-E7-A7XN-01 12 53682428 53682428 G C ESPL1 Missense_Mutation p.E1551D 0.16 tolerated(0.29) benign(0.001) TCGA-E7-A7XN-01 12 54966478 54966478 G A PDE1B Missense_Mutation p.D230N 0.16 deleterious(0) probably_damaging(0.953) TCGA-E7-A7XN-01 12 56492571 56492571 C T ERBB3 Silent p.F907F 0.10 TCGA-E7-A7XN-01 12 56514595 56514595 G A ZC3H10 Silent p.Q83Q 0.12 TCGA-E7-A7XN-01 12 56974983 56974983 G C RBMS2 Missense_Mutation p.E186D 0.11 tolerated(0.08) benign(0.428) TCGA-E7-A7XN-01 12 57032035 57032035 C T ATP5B 3'UTR 0.14 TCGA-E7-A7XN-01 12 58135768 58135768 G C AGAP2 5'Flank 0.15 TCGA-E7-A7XN-01 12 63541315 63541315 G C AVPR1A Missense_Mutation p.Q361E 0.17 tolerated(0.08) benign(0.006) TCGA-E7-A7XN-01 12 64536403 64536403 G T SRGAP1 Missense_Mutation p.G1070V 0.08 tolerated_low_confidence(0.06) benign(0.197) TCGA-E7-A7XN-01 12 662974 662974 G C B4GALNT3 Missense_Mutation p.D629H 0.13 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 12 6933319 6933319 G C GPR162 Missense_Mutation p.W85C 0.14 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 12 70949010 70949010 G A PTPRB Silent p.V1691V 0.15 TCGA-E7-A7XN-01 12 92814910 92814910 G C CLLU1OS Nonsense_Mutation p.S61* 0.15 TCGA-E7-A7XN-01 13 108862221 108862221 T A LIG4 Missense_Mutation p.I466F 0.15 deleterious(0) probably_damaging(0.925) TCGA-E7-A7XN-01 13 110817222 110817222 C T COL4A1 Silent p.P1379P 0.35 TCGA-E7-A7XN-01 13 113772909 113772909 G A F7 Missense_Mutation p.E330K 0.17 deleterious(0.04) benign(0.05) TCGA-E7-A7XN-01 13 113798338 113798338 G A F10 Missense_Mutation p.E226K 0.17 tolerated(0.46) benign(0.011) TCGA-E7-A7XN-01 13 114157865 114157865 C G TMCO3 Missense_Mutation p.L334V 0.22 tolerated(0.94) benign(0.004) TCGA-E7-A7XN-01 13 20220920 20220920 G C MPHOSPH8 Missense_Mutation p.R236T 0.16 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-E7-A7XN-01 13 20221255 20221255 G C MPHOSPH8 Missense_Mutation p.E348Q 0.09 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-E7-A7XN-01 13 24330705 24330705 C G MIPEP Missense_Mutation p.E675Q 0.06 tolerated(0.1) benign(0.356) TCGA-E7-A7XN-01 13 25009585 25009585 C T PARP4 Missense_Mutation p.E1232K 0.22 deleterious(0.05) benign(0.025) TCGA-E7-A7XN-01 13 25072346 25072346 C G PARP4 Missense_Mutation p.E167Q 0.16 tolerated(0.09) benign(0.024) TCGA-E7-A7XN-01 13 26129156 26129156 G C ATP8A2 Missense_Mutation p.D405H 0.10 deleterious(0) probably_damaging(0.981) TCGA-E7-A7XN-01 13 41382650 41382650 C G SLC25A15 Missense_Mutation p.I233M 0.14 deleterious(0) possibly_damaging(0.721) TCGA-E7-A7XN-01 13 43930219 43930219 T A ENOX1 Missense_Mutation p.Q220L 0.12 deleterious(0.03) benign(0.008) TCGA-E7-A7XN-01 13 46559692 46559692 C G ZC3H13 Missense_Mutation p.R487T 0.11 unknown(0) TCGA-E7-A7XN-01 13 46919708 46919708 C G KIAA0226L Silent p.P553P 0.11 TCGA-E7-A7XN-01 13 76415254 76415254 C G LMO7 Missense_Mutation p.Q965E 0.13 deleterious(0) possibly_damaging(0.546) TCGA-E7-A7XN-01 13 78492556 78492556 C G EDNRB Missense_Mutation p.K141N 0.16 tolerated(0.15) benign(0.366) TCGA-E7-A7XN-01 13 88327860 88327860 C G SLITRK5 Missense_Mutation p.L73V 0.16 tolerated(0.87) benign(0.109) TCGA-E7-A7XN-01 13 88328195 88328195 C G SLITRK5 Silent p.L184L 0.14 TCGA-E7-A7XN-01 14 100828117 100828117 C T WARS Missense_Mutation p.E81K 0.13 tolerated(0.52) benign(0.001) TCGA-E7-A7XN-01 14 101349479 101349479 C A RTL1 Missense_Mutation p.M549I 0.11 tolerated(1) benign(0) TCGA-E7-A7XN-01 14 101377493 101377493 C A MIR370 RNA 0.10 TCGA-E7-A7XN-01 14 101416195 101416195 G A SNORD114-1 RNA 0.17 TCGA-E7-A7XN-01 14 102384237 102384237 G C PPP2R5C Missense_Mutation p.E497Q 0.11 tolerated(0.16) possibly_damaging(0.642) TCGA-E7-A7XN-01 14 102483764 102483764 G C DYNC1H1 Missense_Mutation p.W2700C 0.15 probably_damaging(1) TCGA-E7-A7XN-01 14 102898452 102898452 G C TECPR2 Missense_Mutation p.K468N 0.20 deleterious(0.01) benign(0.279) TCGA-E7-A7XN-01 14 103390309 103390309 C T AMN Missense_Mutation p.S67L 0.16 deleterious(0.01) possibly_damaging(0.656) TCGA-E7-A7XN-01 14 104216224 104216224 C T PPP1R13B Silent p.Q292Q 0.15 TCGA-E7-A7XN-01 14 104381498 104381498 C T C14orf2 Nonsense_Mutation p.W27* 0.23 TCGA-E7-A7XN-01 14 21957551 21957551 G C TOX4 Missense_Mutation p.E267Q 0.18 deleterious(0) possibly_damaging(0.883) TCGA-E7-A7XN-01 14 22362696 22362696 C T TRAV8-4 5'UTR 0.21 TCGA-E7-A7XN-01 14 24590581 24590581 G A DCAF11 Silent p.R418R 0.15 TCGA-E7-A7XN-01 14 31790818 31790818 C T HEATR5A Missense_Mutation p.D1286N 0.28 tolerated(0.32) benign(0.011) TCGA-E7-A7XN-01 14 32030639 32030639 C T NUBPL 5'UTR 0.20 TCGA-E7-A7XN-01 14 39644534 39644534 G C PNN Missense_Mutation p.E17D 0.18 tolerated(0.14) possibly_damaging(0.777) TCGA-E7-A7XN-01 14 50249293 50249293 C T KLHDC2 Nonsense_Mutation p.Q360* 0.11 TCGA-E7-A7XN-01 14 50671062 50671062 C G SOS2 Silent p.L51L 0.13 TCGA-E7-A7XN-01 14 58941343 58941343 G A KIAA0586 Missense_Mutation p.E938K 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-E7-A7XN-01 14 58955547 58955547 G A KIAA0586 Missense_Mutation p.E1299K 0.10 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 14 59782054 59782054 C G DAAM1 Silent p.L110L 0.10 TCGA-E7-A7XN-01 14 64587684 64587684 C G SYNE2 Missense_Mutation p.Q4355E 0.23 benign(0.019) TCGA-E7-A7XN-01 14 68272007 68272007 C T ZFYVE26 Missense_Mutation p.E400K 0.08 tolerated(0.68) benign(0.001) TCGA-E7-A7XN-01 14 68353838 68353838 C G RAD51B Missense_Mutation p.Q225E 0.20 tolerated(0.08) benign(0.014) TCGA-E7-A7XN-01 14 70924778 70924778 G C ADAM21 Missense_Mutation p.E188Q 0.10 tolerated(1) benign(0.002) TCGA-E7-A7XN-01 14 72818856 72818856 C G RGS6 Missense_Mutation p.I46M 0.14 deleterious(0) benign(0.142) TCGA-E7-A7XN-01 14 73637515 73637515 G C PSEN1 Missense_Mutation p.R33T 0.19 tolerated(0.27) benign(0.005) TCGA-E7-A7XN-01 14 74527289 74527289 G A ALDH6A1 3'UTR 0.19 TCGA-E7-A7XN-01 14 75134072 75134072 C T AREL1 Missense_Mutation p.E685K 0.18 tolerated(0.13) benign(0.017) TCGA-E7-A7XN-01 14 77255661 77255661 G C ANGEL1 Silent p.L641L 0.12 TCGA-E7-A7XN-01 14 77493146 77493146 C G IRF2BPL Missense_Mutation p.K330N 0.15 deleterious(0) unknown(0) TCGA-E7-A7XN-01 14 88945269 88945269 G C PTPN21 Missense_Mutation p.L836V 0.12 tolerated(0.08) benign(0.15) TCGA-E7-A7XN-01 14 92960001 92960001 C G SLC24A4 3'UTR 0.20 TCGA-E7-A7XN-01 14 93264129 93264129 C G GOLGA5 Nonsense_Mutation p.S116* 0.16 TCGA-E7-A7XN-01 14 93760261 93760261 C T BTBD7 Missense_Mutation p.E369K 0.22 deleterious(0.01) benign(0.328) TCGA-E7-A7XN-01 14 94528806 94528806 C T DDX24 Missense_Mutation p.E294K 0.17 tolerated(0.1) benign(0.026) TCGA-E7-A7XN-01 14 99932065 99932065 C T SETD3 Silent p.L26L 0.15 TCGA-E7-A7XN-01 15 100340167 100340167 G C DNM1P46 RNA 0.27 TCGA-E7-A7XN-01 15 102242448 102242448 G A TARSL2 Silent p.I405I 0.12 TCGA-E7-A7XN-01 15 23048697 23048697 C G NIPA1 3'UTR 0.28 TCGA-E7-A7XN-01 15 23811429 23811429 C T MKRN3 Missense_Mutation p.S167F 0.18 tolerated(0.1) benign(0.03) TCGA-E7-A7XN-01 15 28508223 28508223 G C HERC2 Missense_Mutation p.Q655E 0.09 possibly_damaging(0.906) TCGA-E7-A7XN-01 15 31197412 31197412 G C FAN1 Missense_Mutation p.Q182H 0.09 tolerated(0.15) benign(0.04) TCGA-E7-A7XN-01 15 33939638 33939638 G A RYR3 Missense_Mutation p.E1319K 0.19 benign(0.015) TCGA-E7-A7XN-01 15 39885656 39885656 G A THBS1 Silent p.R1018R 0.15 TCGA-E7-A7XN-01 15 40846308 40846308 C G C15orf57 Missense_Mutation p.K149N 0.17 deleterious(0) probably_damaging(0.983) TCGA-E7-A7XN-01 15 40914042 40914042 C T CASC5 Missense_Mutation p.S553L 0.11 tolerated(0.07) benign(0.081) TCGA-E7-A7XN-01 15 40914272 40914272 C T CASC5 Nonsense_Mutation p.Q630* 0.22 TCGA-E7-A7XN-01 15 41805975 41805975 G A LTK 5'UTR 0.26 TCGA-E7-A7XN-01 15 41813024 41813024 G C RPAP1 Silent p.L1120L 0.13 TCGA-E7-A7XN-01 15 42003121 42003121 G C MGA Missense_Mutation p.L886F 0.14 tolerated(0.55) benign(0.013) TCGA-E7-A7XN-01 15 42805172 42805172 G A SNAP23 Missense_Mutation p.R26K 0.14 deleterious(0.05) benign(0.03) TCGA-E7-A7XN-01 15 43438827 43438827 G A TMEM62 Missense_Mutation p.D205N 0.12 tolerated(0.97) benign(0.012) TCGA-E7-A7XN-01 15 43783913 43783913 T A TP53BP1 Missense_Mutation p.I109F 0.19 tolerated(0.75) benign(0.361) TCGA-E7-A7XN-01 15 44028996 44028996 C T RNU6-354P 5'Flank 0.11 TCGA-E7-A7XN-01 15 45555411 45555411 G A SLC28A2 Missense_Mutation p.E139K 0.18 tolerated(0.92) benign(0.001) TCGA-E7-A7XN-01 15 45968325 45968325 C T SQRDL Silent p.I227I 0.14 TCGA-E7-A7XN-01 15 48633852 48633852 G C DUT Intron 0.16 TCGA-E7-A7XN-01 15 50888505 50888505 G C TRPM7 Silent p.V1079V 0.13 TCGA-E7-A7XN-01 15 51827926 51827926 C G DMXL2 Silent p.L790L 0.20 TCGA-E7-A7XN-01 15 52401969 52401969 C T BCL2L10 3'UTR 0.12 TCGA-E7-A7XN-01 15 55710292 55710292 C G C15orf65 Intron 0.12 TCGA-E7-A7XN-01 15 55972312 55972312 G A PRTG Missense_Mutation p.R305W 0.08 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 15 56208209 56208209 G C NEDD4 Nonsense_Mutation p.S274* 0.15 TCGA-E7-A7XN-01 15 56687022 56687022 C T TEX9 Missense_Mutation p.S273L 0.20 deleterious(0.03) benign(0.009) TCGA-E7-A7XN-01 15 56719898 56719898 G A TEX9 Silent p.K353K 0.12 TCGA-E7-A7XN-01 15 63883061 63883061 G C USP3 3'UTR 0.20 TCGA-E7-A7XN-01 15 65849213 65849213 C G PTPLAD1 Missense_Mutation p.S114C 0.18 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 15 67793068 67793068 C G IQCH Missense_Mutation p.S1023C 0.19 tolerated_low_confidence(0.1) possibly_damaging(0.639) TCGA-E7-A7XN-01 15 68596207 68596207 G C ITGA11 Missense_Mutation p.S1133C 0.07 tolerated(0.07) probably_damaging(0.928) TCGA-E7-A7XN-01 15 72837290 72837290 G C ARIH1 Missense_Mutation p.L191F 0.09 tolerated(0.12) benign(0.321) TCGA-E7-A7XN-01 15 72968669 72968669 G A HIGD2B Missense_Mutation p.S16L 0.16 tolerated(0.17) benign(0.302) TCGA-E7-A7XN-01 15 73470685 73470685 C T NEO1 Missense_Mutation p.S403L 0.12 tolerated(0.06) benign(0.051) TCGA-E7-A7XN-01 15 74425108 74425108 C T ISLR2 Missense_Mutation p.R5W 0.22 tolerated(0.18) probably_damaging(0.973) TCGA-E7-A7XN-01 15 74836524 74836524 G C ARID3B Missense_Mutation p.E83Q 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.87) TCGA-E7-A7XN-01 15 74884062 74884062 G A ARID3B Missense_Mutation p.E443K 0.19 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 15 75091737 75091737 G A CSK Missense_Mutation p.D123N 0.19 tolerated(0.49) benign(0.217) TCGA-E7-A7XN-01 15 75652499 75652499 G A MAN2C1 Silent p.L546L 0.17 TCGA-E7-A7XN-01 15 75968322 75968322 C T CSPG4 Missense_Mutation p.E2180K 0.16 tolerated(0.7) benign(0.002) TCGA-E7-A7XN-01 15 77473584 77473584 C G PEAK1 Missense_Mutation p.E229Q 0.16 tolerated(0.09) possibly_damaging(0.765) TCGA-E7-A7XN-01 15 78393296 78393296 C G SH2D7 Missense_Mutation p.S234C 0.20 deleterious(0.01) possibly_damaging(0.862) TCGA-E7-A7XN-01 15 84506907 84506907 G A ADAMTSL3 Missense_Mutation p.D223N 0.20 deleterious(0.03) benign(0.135) TCGA-E7-A7XN-01 16 12059215 12059215 G C TNFRSF17 Missense_Mutation p.E12Q 0.15 deleterious(0.02) possibly_damaging(0.772) TCGA-E7-A7XN-01 16 16248813 16248813 C T ABCC6 Missense_Mutation p.E1320K 0.40 tolerated(0.19) benign(0.444) TCGA-E7-A7XN-01 16 1718005 1718005 C T CRAMP1L Missense_Mutation p.L1049F 0.23 deleterious(0.03) benign(0.139) TCGA-E7-A7XN-01 16 1827834 1827834 G A SPSB3 Missense_Mutation p.S212L 0.24 deleterious(0.01) possibly_damaging(0.871) TCGA-E7-A7XN-01 16 1842251 1842251 G A IGFALS Silent p.L94L 0.16 TCGA-E7-A7XN-01 16 18544483 18544483 C G NOMO2 Silent p.R413R 0.10 TCGA-E7-A7XN-01 16 2028430 2028430 G A TBL3 Missense_Mutation p.E751K 0.22 tolerated(0.17) benign(0.017) TCGA-E7-A7XN-01 16 20749188 20749188 G C THUMPD1 Nonsense_Mutation p.S166* 0.18 TCGA-E7-A7XN-01 16 20812641 20812641 G A ERI2 Missense_Mutation p.S115F 0.10 deleterious(0) possibly_damaging(0.866) TCGA-E7-A7XN-01 16 20860751 20860751 G C AC004381.6 Silent p.L758L 0.16 TCGA-E7-A7XN-01 16 23391756 23391756 C T SCNN1B Silent p.L519L 0.16 TCGA-E7-A7XN-01 16 28898975 28898975 C A ATP2A1 Missense_Mutation p.S287Y 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-E7-A7XN-01 16 30081176 30081176 G A ALDOA Silent p.Q329Q 0.12 TCGA-E7-A7XN-01 16 30977267 30977267 C G SETD1A Missense_Mutation p.R689G 0.06 benign(0.025) TCGA-E7-A7XN-01 16 31195651 31195651 C T FUS Nonsense_Mutation p.Q153* 0.11 TCGA-E7-A7XN-01 16 31212907 31212907 C T PYCARD Silent p.%3D 0.10 TCGA-E7-A7XN-01 16 31371055 31371055 G A ITGAX Silent p.L155L 0.11 TCGA-E7-A7XN-01 16 321237 321237 G C RGS11 Nonsense_Mutation p.S276* 0.13 TCGA-E7-A7XN-01 16 3406126 3406126 C G OR2C1 Missense_Mutation p.F62L 0.13 deleterious(0) probably_damaging(0.986) TCGA-E7-A7XN-01 16 4562597 4562597 G A CDIP1 Silent p.I201I 0.14 TCGA-E7-A7XN-01 16 50759418 50759418 C T NOD2 Silent p.L967L 0.16 TCGA-E7-A7XN-01 16 53296986 53296986 G C CHD9 Missense_Mutation p.D1433H 0.32 probably_damaging(1) TCGA-E7-A7XN-01 16 53720391 53720391 C G RPGRIP1L Missense_Mutation p.E244Q 0.37 deleterious(0) probably_damaging(0.946) TCGA-E7-A7XN-01 16 56969206 56969206 C G HERPUD1 Silent p.L69L 0.29 TCGA-E7-A7XN-01 16 633432 633432 C G PIGQ Missense_Mutation p.S694C 0.15 deleterious_low_confidence(0) benign(0.265) TCGA-E7-A7XN-01 16 633746 633746 C T PIGQ 3'UTR 0.16 TCGA-E7-A7XN-01 16 66919543 66919543 G A PDP2 Silent p.Q452Q 0.29 TCGA-E7-A7XN-01 16 67654637 67654637 G C CTCF Missense_Mutation p.G375A 0.36 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 16 67697683 67697683 C T ENKD1 Missense_Mutation p.R207Q 0.33 tolerated(0.38) benign(0.004) TCGA-E7-A7XN-01 16 697517 697517 G A FAM195A Missense_Mutation p.E95K 0.13 tolerated(0.07) benign(0.168) TCGA-E7-A7XN-01 16 73127109 73127109 A T HCCAT5 Intron 0.35 TCGA-E7-A7XN-01 16 744271 744271 C T FBXL16 3'UTR 0.21 TCGA-E7-A7XN-01 16 745574 745574 G A FBXL16 Missense_Mutation p.S328L 0.16 tolerated(0.09) probably_damaging(0.997) TCGA-E7-A7XN-01 16 74950088 74950088 C T WDR59 Missense_Mutation p.E346K 0.32 tolerated(0.14) benign(0.021) TCGA-E7-A7XN-01 16 815688 815688 C G MSLN Intron 0.21 TCGA-E7-A7XN-01 16 818647 818647 G C MSLN Splice_Site p.X603_splice 0.21 TCGA-E7-A7XN-01 16 88779732 88779732 C A CTU2 Silent p.I250I 0.25 TCGA-E7-A7XN-01 16 89757912 89757912 C T CDK10 Silent p.I98I 0.26 TCGA-E7-A7XN-01 16 89795702 89795702 C T ZNF276 Missense_Mutation p.S382F 0.33 tolerated(0.09) benign(0.091) TCGA-E7-A7XN-01 17 10212869 10212869 C T MYH13 Silent p.K1645K 0.13 TCGA-E7-A7XN-01 17 10299867 10299867 C T MYH8 Intron 0.21 TCGA-E7-A7XN-01 17 10397923 10397923 C T MYH1 Missense_Mutation p.R1845H 0.06 tolerated(0.08) probably_damaging(0.971) TCGA-E7-A7XN-01 17 15517163 15517163 G C RP11-385D13.1 Silent p.L595L 0.09 TCGA-E7-A7XN-01 17 1703233 1703233 C T SMYD4 Silent p.V485V 0.08 TCGA-E7-A7XN-01 17 1703325 1703325 C G SMYD4 Missense_Mutation p.E455Q 0.18 tolerated(0.93) benign(0.034) TCGA-E7-A7XN-01 17 18023320 18023320 G A MYO15A Silent p.P402P 0.14 TCGA-E7-A7XN-01 17 18041449 18041449 G C MYO15A Missense_Mutation p.Q1632H 0.14 unknown(0) TCGA-E7-A7XN-01 17 18907176 18907176 G C FAM83G Missense_Mutation p.S60W 0.14 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 17 19317896 19317896 C T RNF112 Intron 0.13 TCGA-E7-A7XN-01 17 19480648 19480648 G A SLC47A1 Missense_Mutation p.E499K 0.15 tolerated(0.1) benign(0.164) TCGA-E7-A7XN-01 17 2203548 2203548 C T SMG6 Missense_Mutation p.E167K 0.14 tolerated_low_confidence(0.31) benign(0.201) TCGA-E7-A7XN-01 17 27076606 27076606 G C TRAF4 3'UTR 0.13 TCGA-E7-A7XN-01 17 29553450 29553450 C G NF1 Intron 0.22 TCGA-E7-A7XN-01 17 30510207 30510207 G A RHOT1 Silent p.L152L 0.11 TCGA-E7-A7XN-01 17 30658809 30658809 C T C17orf75 Missense_Mutation p.M388I 0.09 tolerated(0.42) benign(0.005) TCGA-E7-A7XN-01 17 30678824 30678824 G A ZNF207 Missense_Mutation p.D21N 0.14 deleterious(0) benign(0.068) TCGA-E7-A7XN-01 17 32905942 32905942 G T C17orf102 Missense_Mutation p.L120M 0.20 tolerated_low_confidence(0.1) benign(0.002) TCGA-E7-A7XN-01 17 34958748 34958748 G A MRM1 Missense_Mutation p.G170E 0.12 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 17 35974371 35974371 C G DDX52 Missense_Mutation p.K590N 0.15 deleterious(0.04) benign(0.031) TCGA-E7-A7XN-01 17 36715948 36715948 G C SRCIN1 Missense_Mutation p.S633W 0.26 deleterious(0.01) possibly_damaging(0.792) TCGA-E7-A7XN-01 17 37340339 37340339 G C CACNB1 Silent p.L281L 0.15 TCGA-E7-A7XN-01 17 37863257 37863257 G C ERBB2 Missense_Mutation p.D30H 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-E7-A7XN-01 17 38145041 38145041 G C PSMD3 Missense_Mutation p.E219Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-E7-A7XN-01 17 3917671 3917671 G A ZZEF1 Nonsense_Mutation p.Q2762* 0.15 TCGA-E7-A7XN-01 17 39333898 39333898 G C KRTAP4-2 3'UTR 0.10 TCGA-E7-A7XN-01 17 3935433 3935433 C T ZZEF1 Silent p.R2293R 0.14 TCGA-E7-A7XN-01 17 40478169 40478169 C T STAT3 Missense_Mutation p.E444K 0.18 tolerated(0.37) benign(0.311) TCGA-E7-A7XN-01 17 40831733 40831733 G A CCR10 Silent p.L309L 0.15 TCGA-E7-A7XN-01 17 40937119 40937119 G A WNK4 Missense_Mutation p.R392K 0.30 deleterious(0.02) unknown(0) TCGA-E7-A7XN-01 17 41056052 41056052 G A G6PC Missense_Mutation p.G112E 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 17 42164824 42164824 C T HDAC5 Missense_Mutation p.E615K 0.17 tolerated(0.26) benign(0.107) TCGA-E7-A7XN-01 17 42275038 42275038 C T ATXN7L3 Missense_Mutation p.E38K 0.12 deleterious(0) probably_damaging(0.925) TCGA-E7-A7XN-01 17 45266572 45266572 C G CDC27 5'Flank 0.23 TCGA-E7-A7XN-01 17 45369745 45369745 G A ITGB3 Missense_Mutation p.E501K 0.16 deleterious(0.03) benign(0.178) TCGA-E7-A7XN-01 17 45773487 45773487 C T TBKBP1 Silent p.S3S 0.35 TCGA-E7-A7XN-01 17 46629725 46629725 G C HOXB3 Missense_Mutation p.Q38E 0.16 tolerated(0.06) possibly_damaging(0.785) TCGA-E7-A7XN-01 17 46629845 46629845 G T HOXB3 5'UTR 0.15 TCGA-E7-A7XN-01 17 46690650 46690650 C T HOXB8 Missense_Mutation p.E216K 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-E7-A7XN-01 17 47874172 47874172 G T KAT7 Missense_Mutation p.R75I 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-E7-A7XN-01 17 47874209 47874209 G C KAT7 Silent p.V87V 0.15 TCGA-E7-A7XN-01 17 4789780 4789780 C G MINK1 Missense_Mutation p.L270V 0.12 deleterious(0) possibly_damaging(0.626) TCGA-E7-A7XN-01 17 4789839 4789839 C T MINK1 Silent p.I289I 0.15 TCGA-E7-A7XN-01 17 4789840 4789840 C T MINK1 Missense_Mutation p.R290W 0.15 deleterious(0) possibly_damaging(0.588) TCGA-E7-A7XN-01 17 48762102 48762102 G A ABCC3 Missense_Mutation p.M1382I 0.11 tolerated(0.09) possibly_damaging(0.465) TCGA-E7-A7XN-01 17 5042639 5042639 C G USP6 Missense_Mutation p.P390A 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-E7-A7XN-01 17 5058888 5058888 C A USP6 Missense_Mutation p.H939N 0.17 tolerated_low_confidence(0.1) probably_damaging(0.997) TCGA-E7-A7XN-01 17 5074102 5074102 C T USP6 Silent p.G1282G 0.15 TCGA-E7-A7XN-01 17 52981124 52981124 C G TOM1L1 Missense_Mutation p.I38M 0.16 deleterious(0.03) probably_damaging(1) TCGA-E7-A7XN-01 17 55926667 55926667 C G MRPS23 Missense_Mutation p.R50P 0.14 deleterious(0.04) probably_damaging(0.951) TCGA-E7-A7XN-01 17 57289102 57289102 C T SMG8 Nonsense_Mutation p.Q564* 0.16 TCGA-E7-A7XN-01 17 57760510 57760510 G C CLTC Missense_Mutation p.E1310Q 0.13 deleterious(0.02) probably_damaging(1) TCGA-E7-A7XN-01 17 58235781 58235781 G A CA4 Missense_Mutation p.E240K 0.25 tolerated(0.44) benign(0.377) TCGA-E7-A7XN-01 17 58511134 58511134 C A C17orf64 3'Flank 0.12 TCGA-E7-A7XN-01 17 60769597 60769597 C T MRC2 Missense_Mutation p.P1409S 0.13 tolerated(0.81) benign(0.011) TCGA-E7-A7XN-01 17 61499156 61499156 T A TANC2 Missense_Mutation p.V1938D 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-E7-A7XN-01 17 62270958 62270958 C T TEX2 Missense_Mutation p.E713K 0.16 tolerated(0.1) benign(0.061) TCGA-E7-A7XN-01 17 64961105 64961105 C T CACNG4 Silent p.I26I 0.34 TCGA-E7-A7XN-01 17 67144872 67144872 C G ABCA10 3'UTR 0.17 TCGA-E7-A7XN-01 17 681910 681910 G C GLOD4 Intron 0.15 TCGA-E7-A7XN-01 17 7096312 7096312 G A DLG4 Silent p.S649S 0.16 TCGA-E7-A7XN-01 17 7230258 7230258 C T NEURL4 Silent p.L288L 0.09 TCGA-E7-A7XN-01 17 72915738 72915738 G C USH1G Missense_Mutation p.S398C 0.11 deleterious(0.04) benign(0.037) TCGA-E7-A7XN-01 17 73847741 73847741 C G WBP2 Missense_Mutation p.D26H 0.12 deleterious(0.03) possibly_damaging(0.757) TCGA-E7-A7XN-01 17 7476125 7476125 G C SENP3 3'Flank 0.15 TCGA-E7-A7XN-01 17 7480706 7480706 G A EIF4A1 Silent p.V223V 0.10 TCGA-E7-A7XN-01 17 74902216 74902216 C G MGAT5B Silent p.L335L 0.15 TCGA-E7-A7XN-01 17 76832305 76832305 C G USP36 Missense_Mutation p.K47N 0.24 deleterious(0) probably_damaging(0.913) TCGA-E7-A7XN-01 17 7749991 7749991 C T KDM6B Missense_Mutation p.S215L 0.19 unknown(0) TCGA-E7-A7XN-01 17 78280188 78280188 C T RNF213 Missense_Mutation p.R783C 0.18 benign(0.238) TCGA-E7-A7XN-01 17 78336962 78336962 G A RNF213 Missense_Mutation p.E3806K 0.10 benign(0.306) TCGA-E7-A7XN-01 17 80048886 80048886 C A FASN Missense_Mutation p.D518Y 0.17 deleterious(0.01) possibly_damaging(0.893) TCGA-E7-A7XN-01 17 80159550 80159550 C T CCDC57 Missense_Mutation p.E91K 0.14 deleterious(0) probably_damaging(0.985) TCGA-E7-A7XN-01 17 80789280 80789280 C G ZNF750 Missense_Mutation p.E351Q 0.11 deleterious(0.01) possibly_damaging(0.892) TCGA-E7-A7XN-01 17 80790114 80790115 - GTCTA ZNF750 Nonsense_Mutation p.P73* 0.25 TCGA-E7-A7XN-01 17 8351882 8351882 C T NDEL1 Missense_Mutation p.S135L 0.17 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 17 8380343 8380343 C T MYH10 Missense_Mutation p.M1910I 0.10 benign(0.071) TCGA-E7-A7XN-01 17 8701637 8701637 C G MFSD6L Missense_Mutation p.D268H 0.14 deleterious(0) probably_damaging(0.993) TCGA-E7-A7XN-01 17 9497616 9497616 G A WDR16 Missense_Mutation p.E172K 0.15 tolerated(0.26) benign(0.269) TCGA-E7-A7XN-01 18 10696492 10696492 G A PIEZO2 Silent p.L2178L 0.10 TCGA-E7-A7XN-01 18 21057017 21057017 C T RIOK3 Silent p.L407L 0.11 TCGA-E7-A7XN-01 18 21500974 21500974 G C LAMA3 Missense_Mutation p.E2667Q 0.14 benign(0.363) TCGA-E7-A7XN-01 18 21532955 21532955 C T LAMA3 Silent p.V3246V 0.14 TCGA-E7-A7XN-01 18 24436234 24436234 C G AQP4 Missense_Mutation p.D305H 0.13 tolerated_low_confidence(0.07) benign(0.168) TCGA-E7-A7XN-01 18 2656144 2656144 G A SMCHD1 Missense_Mutation p.G24S 0.29 tolerated_low_confidence(0.16) benign(0.115) TCGA-E7-A7XN-01 18 28918318 28918318 G A DSG1 Missense_Mutation p.D436N 0.10 tolerated(0.43) benign(0.011) TCGA-E7-A7XN-01 18 43496478 43496478 G T EPG5 Silent p.V1103V 0.17 TCGA-E7-A7XN-01 18 46645272 46645272 C G DYM Missense_Mutation p.E530Q 0.10 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 18 56203547 56203547 G C ALPK2 Missense_Mutation p.S1291C 0.14 tolerated(0.09) benign(0.007) TCGA-E7-A7XN-01 18 56936174 56936174 G C RAX 3'UTR 0.17 TCGA-E7-A7XN-01 18 56936181 56936181 T A RAX 3'UTR 0.22 TCGA-E7-A7XN-01 18 65181271 65181271 C T DSEL Missense_Mutation p.R202Q 0.11 tolerated(0.25) probably_damaging(0.978) TCGA-E7-A7XN-01 18 6964670 6964670 C T LAMA1 Missense_Mutation p.R2443K 0.15 tolerated(0.09) benign(0.119) TCGA-E7-A7XN-01 18 72238449 72238449 C T CNDP1 Missense_Mutation p.S262L 0.17 deleterious(0) probably_damaging(0.995) TCGA-E7-A7XN-01 18 72632492 72632492 C T ZNF407 Missense_Mutation p.R1758C 0.10 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 19 10230580 10230580 G C EIF3G 5'Flank 0.14 TCGA-E7-A7XN-01 19 10403673 10403673 G C ICAM5 Splice_Site p.X406_splice 0.20 TCGA-E7-A7XN-01 19 10418946 10418946 C T ZGLP1 Missense_Mutation p.E138K 0.17 tolerated(0.05) benign(0.198) TCGA-E7-A7XN-01 19 10431553 10431553 G C RAVER1 Silent p.L533L 0.15 TCGA-E7-A7XN-01 19 10670161 10670161 C G KRI1 Silent p.L362L 0.17 TCGA-E7-A7XN-01 19 1095360 1095360 G C POLR2E 5'UTR 0.12 TCGA-E7-A7XN-01 19 110706 110706 C T OR4F17 Missense_Mutation p.L10F 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-E7-A7XN-01 19 11687403 11687403 C G ACP5 Missense_Mutation p.W130C 0.11 deleterious(0) possibly_damaging(0.823) TCGA-E7-A7XN-01 19 11832718 11832718 C T ZNF823 Missense_Mutation p.R544Q 0.18 tolerated(0.63) benign(0.053) TCGA-E7-A7XN-01 19 12126028 12126028 G A ZNF433 Missense_Mutation p.H552Y 0.13 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 19 12383363 12383363 G A ZNF44 Silent p.F617F 0.20 TCGA-E7-A7XN-01 19 12462058 12462058 T C ZNF442 Missense_Mutation p.D114G 0.24 deleterious(0.04) benign(0.005) TCGA-E7-A7XN-01 19 12758066 12758066 G A MAN2B1 Silent p.L968L 0.11 TCGA-E7-A7XN-01 19 12792570 12792570 G A DHPS Missense_Mutation p.S4F 0.20 deleterious(0.01) benign(0.044) TCGA-E7-A7XN-01 19 13063804 13063804 G A RAD23A Missense_Mutation p.E345K 0.06 deleterious(0) probably_damaging(0.97) TCGA-E7-A7XN-01 19 13386725 13386725 C T CACNA1A Missense_Mutation p.D1310N 0.14 benign(0.001) TCGA-E7-A7XN-01 19 13875420 13875420 C T MRI1 Silent p.I6I 0.24 TCGA-E7-A7XN-01 19 13928140 13928140 G C ZSWIM4 Missense_Mutation p.E431Q 0.12 tolerated(0.14) unknown(0) TCGA-E7-A7XN-01 19 14074531 14074531 C G RFX1 Missense_Mutation p.E797Q 0.14 deleterious(0.01) probably_damaging(0.932) TCGA-E7-A7XN-01 19 14758014 14758014 C A EMR3 Silent p.T287T 0.20 TCGA-E7-A7XN-01 19 14939034 14939034 G A OR7A5 Missense_Mutation p.T7I 0.17 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-E7-A7XN-01 19 15918788 15918788 G A OR10H1 Silent p.F20F 0.19 TCGA-E7-A7XN-01 19 16272206 16272206 C G CIB3 3'UTR 0.14 TCGA-E7-A7XN-01 19 18104305 18104305 G A KCNN1 Silent p.R438R 0.20 TCGA-E7-A7XN-01 19 1825877 1825877 C T REXO1 Silent p.Q659Q 0.08 TCGA-E7-A7XN-01 19 1825898 1825898 C G REXO1 Silent p.L652L 0.10 TCGA-E7-A7XN-01 19 19648141 19648141 G C YJEFN3 Missense_Mutation p.E236D 0.27 tolerated(0.06) benign(0.065) TCGA-E7-A7XN-01 19 1980192 1980192 G A CSNK1G2 Missense_Mutation p.R413Q 0.16 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-E7-A7XN-01 19 19906020 19906020 C G ZNF506 Missense_Mutation p.E226Q 0.08 deleterious(0.03) possibly_damaging(0.512) TCGA-E7-A7XN-01 19 20959281 20959281 G A ZNF66 Intron 0.14 TCGA-E7-A7XN-01 19 24310134 24310134 C T ZNF254 Silent p.I444I 0.12 TCGA-E7-A7XN-01 19 3573775 3573775 G C HMG20B Missense_Mutation p.E42Q 0.20 deleterious(0.05) benign(0.195) TCGA-E7-A7XN-01 19 35757813 35757813 G C LSR Missense_Mutation p.E411Q 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-E7-A7XN-01 19 36211928 36211928 C T KMT2B Missense_Mutation p.S560L 0.27 possibly_damaging(0.879) TCGA-E7-A7XN-01 19 3624086 3624086 G A CACTIN Missense_Mutation p.S81L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-E7-A7XN-01 19 36350381 36350381 A T KIRREL2 Splice_Site p.X175_splice 0.14 TCGA-E7-A7XN-01 19 36430720 36430720 C T LRFN3 Silent p.V131V 0.08 TCGA-E7-A7XN-01 19 37441534 37441534 G A ZNF568 Silent p.Q493Q 0.13 TCGA-E7-A7XN-01 19 38673327 38673327 G A SIPA1L3 Nonsense_Mutation p.W1459* 0.15 TCGA-E7-A7XN-01 19 38993165 38993165 G A RYR1 Missense_Mutation p.E2545K 0.22 benign(0.004) TCGA-E7-A7XN-01 19 39096346 39096346 C T MAP4K1 Missense_Mutation p.E409K 0.17 tolerated(0.16) benign(0.194) TCGA-E7-A7XN-01 19 40383904 40383904 C T FCGBP Missense_Mutation p.G3236R 0.38 probably_damaging(0.989) TCGA-E7-A7XN-01 19 41135318 41135318 G A LTBP4 Missense_Mutation p.E1579K 0.14 deleterious(0.01) possibly_damaging(0.631) TCGA-E7-A7XN-01 19 41384746 41384746 C G CYP2A7 Missense_Mutation p.K250N 0.22 deleterious(0.01) possibly_damaging(0.876) TCGA-E7-A7XN-01 19 41388065 41388065 C G CYP2A7 Silent p.V17V 0.17 TCGA-E7-A7XN-01 19 41928903 41928903 G C BCKDHA Missense_Mutation p.R332S 0.21 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 19 43683262 43683262 C T PSG5 Intron 0.13 TCGA-E7-A7XN-01 19 43979513 43979513 C T PHLDB3 3'UTR 0.11 TCGA-E7-A7XN-01 19 44590807 44590807 C T ZNF284 Silent p.V392V 0.13 TCGA-E7-A7XN-01 19 45920135 45920135 G C ERCC1 Silent p.L182L 0.16 TCGA-E7-A7XN-01 19 46026926 46026926 G A VASP Silent p.E282E 0.25 TCGA-E7-A7XN-01 19 46191771 46191771 C T SNRPD2 Missense_Mutation p.R19Q 0.16 tolerated(0.63) benign(0.007) TCGA-E7-A7XN-01 19 46317957 46317957 C T RSPH6A Missense_Mutation p.G160S 0.21 tolerated_low_confidence(0.85) benign(0.002) TCGA-E7-A7XN-01 19 47879256 47879256 G A DHX34 Missense_Mutation p.E795K 0.15 tolerated(0.91) benign(0.108) TCGA-E7-A7XN-01 19 4839528 4839528 G A PLIN3 Silent p.L327L 0.20 TCGA-E7-A7XN-01 19 49174183 49174183 C G NTN5 Missense_Mutation p.D21H 0.26 tolerated(0.22) benign(0.019) TCGA-E7-A7XN-01 19 49259604 49259604 C T FGF21 Silent p.L37L 0.20 TCGA-E7-A7XN-01 19 49526323 49526323 G A CGB Silent p.L106L 0.08 TCGA-E7-A7XN-01 19 49639073 49639073 C T PPFIA3 Nonsense_Mutation p.Q520* 0.19 TCGA-E7-A7XN-01 19 50195567 50195567 G C CPT1C Missense_Mutation p.E20Q 0.17 deleterious(0.01) benign(0.193) TCGA-E7-A7XN-01 19 51022267 51022267 C G LRRC4B Missense_Mutation p.E235Q 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-E7-A7XN-01 19 51914354 51914354 C T SIGLEC10 Silent p.%3D 0.13 TCGA-E7-A7XN-01 19 52658816 52658816 G C ZNF836 Nonsense_Mutation p.S707* 0.10 TCGA-E7-A7XN-01 19 53344811 53344811 C T ZNF468 Missense_Mutation p.D246N 0.19 tolerated(0.49) probably_damaging(0.945) TCGA-E7-A7XN-01 19 53453155 53453155 C T ZNF816 Missense_Mutation p.E625K 0.09 tolerated(0.07) benign(0.07) TCGA-E7-A7XN-01 19 54646887 54646887 G A CNOT3 Missense_Mutation p.E20K 0.16 deleterious(0) probably_damaging(0.994) TCGA-E7-A7XN-01 19 54780688 54780688 G A LILRB2 Nonsense_Mutation p.R486* 0.17 TCGA-E7-A7XN-01 19 54782818 54782818 A T LILRB2 Silent p.P268P 0.18 TCGA-E7-A7XN-01 19 54868131 54868131 G A LAIR1 Silent p.F184F 0.16 TCGA-E7-A7XN-01 19 55828287 55828287 G A TMEM150B Silent p.F124F 0.16 TCGA-E7-A7XN-01 19 56241199 56241199 G A NLRP9 Silent p.L664L 0.22 TCGA-E7-A7XN-01 19 5626483 5626483 C G SAFB Nonsense_Mutation p.S86* 0.14 TCGA-E7-A7XN-01 19 5745932 5745932 C G CATSPERD Missense_Mutation p.F222L 0.17 deleterious(0.02) benign(0.338) TCGA-E7-A7XN-01 19 58232821 58232821 C T ZNF671 Silent p.Q211Q 0.12 TCGA-E7-A7XN-01 19 58291116 58291116 G A ZNF586 Silent p.S387S 0.13 TCGA-E7-A7XN-01 19 58385386 58385386 G T ZNF814 Missense_Mutation p.H458N 0.19 deleterious(0) probably_damaging(0.941) TCGA-E7-A7XN-01 19 58989021 58989021 G C ZNF446 Silent p.L120L 0.13 TCGA-E7-A7XN-01 19 6697514 6697514 C G C3 Missense_Mutation p.K879N 0.16 deleterious(0.04) benign(0.242) TCGA-E7-A7XN-01 19 7619567 7619567 C G PNPLA6 Missense_Mutation p.I874M 0.13 deleterious(0) probably_damaging(0.987) TCGA-E7-A7XN-01 19 8038682 8038682 C G ELAVL1 Missense_Mutation p.Q119H 0.19 deleterious(0.04) possibly_damaging(0.738) TCGA-E7-A7XN-01 19 829704 829704 C T AZU1 Nonsense_Mutation p.Q120* 0.18 TCGA-E7-A7XN-01 19 9058707 9058707 G C MUC16 Missense_Mutation p.S9580C 0.08 unknown(0) TCGA-E7-A7XN-01 19 9086583 9086583 C G MUC16 Missense_Mutation p.Q1744H 0.15 unknown(0) TCGA-E7-A7XN-01 19 9089500 9089500 G T MUC16 Missense_Mutation p.S772Y 0.20 unknown(0) TCGA-E7-A7XN-01 19 9490244 9490244 C G ZNF177 Missense_Mutation p.Q68E 0.28 deleterious(0.05) probably_damaging(0.954) TCGA-E7-A7XN-01 1 101387367 101387367 C T SLC30A7 Missense_Mutation p.S271L 0.16 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 1 104114773 104114773 C T AMY2B Silent p.F70F 0.03 TCGA-E7-A7XN-01 1 10459129 10459129 C T PGD 5'Flank 0.22 TCGA-E7-A7XN-01 1 109812635 109812635 C G CELSR2 Missense_Mutation p.F2396L 0.17 tolerated(1) benign(0) TCGA-E7-A7XN-01 1 110022243 110022243 C G SYPL2 3'UTR 0.17 TCGA-E7-A7XN-01 1 110086039 110086039 C T GPR61 Missense_Mutation p.S132L 0.18 deleterious(0) possibly_damaging(0.835) TCGA-E7-A7XN-01 1 111490848 111490848 G A LRIF1 Silent p.L681L 0.16 TCGA-E7-A7XN-01 1 113232569 113232569 G A MOV10 Missense_Mutation p.A229T 0.15 tolerated(0.55) benign(0.001) TCGA-E7-A7XN-01 1 114201821 114201821 G C MAGI3 Missense_Mutation p.D917H 0.16 tolerated(0.19) probably_damaging(0.952) TCGA-E7-A7XN-01 1 114301341 114301341 G C PHTF1 5'UTR 0.08 TCGA-E7-A7XN-01 1 114454667 114454667 C T DCLRE1B Missense_Mutation p.H485Y 0.21 tolerated_low_confidence(0.35) benign(0.001) TCGA-E7-A7XN-01 1 117554561 117554561 C T CD101 Nonsense_Mutation p.Q272* 0.19 TCGA-E7-A7XN-01 1 12009946 12009946 C T PLOD1 Silent p.V95V 0.14 TCGA-E7-A7XN-01 1 120457999 120457999 C G NOTCH2 Missense_Mutation p.G2449A 0.25 tolerated(0.79) benign(0.248) TCGA-E7-A7XN-01 1 12061836 12061836 C T MFN2 Silent p.L327L 0.18 TCGA-E7-A7XN-01 1 12195644 12195644 G C TNFRSF8 Splice_Site p.X437_splice 0.14 TCGA-E7-A7XN-01 1 12254037 12254037 G C TNFRSF1B Missense_Mutation p.L271F 0.07 tolerated(0.05) benign(0.055) TCGA-E7-A7XN-01 1 12907618 12907618 C A HNRNPCL1 Missense_Mutation p.L175F 0.18 deleterious(0) possibly_damaging(0.602) TCGA-E7-A7XN-01 1 145532243 145532243 G C ITGA10 Missense_Mutation p.R296T 0.22 deleterious(0.02) benign(0.005) TCGA-E7-A7XN-01 1 147090749 147090749 C T BCL9 Missense_Mutation p.P263L 0.17 tolerated(0.31) benign(0.006) TCGA-E7-A7XN-01 1 147230407 147230407 G A GJA5 Nonsense_Mutation p.Q314* 0.15 TCGA-E7-A7XN-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.17 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-E7-A7XN-01 1 150255774 150255774 G T C1orf51 Missense_Mutation p.D33Y 0.18 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-E7-A7XN-01 1 150266763 150266763 G A MRPS21 5'UTR 0.16 TCGA-E7-A7XN-01 1 151752451 151752451 G A TDRKH Nonsense_Mutation p.Q133* 0.13 TCGA-E7-A7XN-01 1 153431477 153431477 G C S100A7 Missense_Mutation p.Q5E 0.14 tolerated(1) benign(0.001) TCGA-E7-A7XN-01 1 153634895 153634895 C T ILF2 Missense_Mutation p.E384K 0.13 tolerated_low_confidence(0.15) unknown(0) TCGA-E7-A7XN-01 1 153974213 153974213 C T NUP210L Missense_Mutation p.E1727K 0.15 tolerated(0.15) benign(0.038) TCGA-E7-A7XN-01 1 155209797 155209797 C G GBA Missense_Mutation p.D63H 0.13 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 1 155263300 155263300 C G PKLR Missense_Mutation p.D400H 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 1 15541871 15541871 C A TMEM51 Missense_Mutation p.D96E 0.11 tolerated(1) benign(0.001) TCGA-E7-A7XN-01 1 155895749 155895749 G C KIAA0907 Intron 0.20 TCGA-E7-A7XN-01 1 156146639 156146639 C T SEMA4A Missense_Mutation p.R713W 0.19 deleterious(0) probably_damaging(0.947) TCGA-E7-A7XN-01 1 156639168 156639168 C T NES Silent p.L1604L 0.11 TCGA-E7-A7XN-01 1 156897567 156897567 C T LRRC71 Missense_Mutation p.H289Y 0.12 deleterious(0.04) possibly_damaging(0.833) TCGA-E7-A7XN-01 1 160063782 160063782 C T IGSF8 Missense_Mutation p.E208K 0.14 tolerated(0.27) benign(0.397) TCGA-E7-A7XN-01 1 160718077 160718077 C G SLAMF7 Missense_Mutation p.S50C 0.10 deleterious(0) probably_damaging(0.985) TCGA-E7-A7XN-01 1 160854638 160854638 G A ITLN1 Silent p.L10L 0.14 TCGA-E7-A7XN-01 1 160854650 160854650 G A ITLN1 Silent p.F6F 0.13 TCGA-E7-A7XN-01 1 161089363 161089363 C T NIT1 Nonsense_Mutation p.Q140* 0.21 TCGA-E7-A7XN-01 1 162467847 162467847 C G UHMK1 Missense_Mutation p.F19L 0.26 tolerated(0.84) benign(0.001) TCGA-E7-A7XN-01 1 162762471 162762471 A T HSD17B7 Nonsense_Mutation p.K20* 0.13 TCGA-E7-A7XN-01 1 16475149 16475150 GG - EPHA2 Frame_Shift_Del p.F182Lfs*31 0.12 TCGA-E7-A7XN-01 1 16895604 16895604 C G NBPF1 Missense_Mutation p.E860Q 0.04 deleterious(0.03) possibly_damaging(0.891) TCGA-E7-A7XN-01 1 169524545 169524545 C G F5 Missense_Mutation p.K331N 0.15 tolerated(0.15) probably_damaging(0.999) TCGA-E7-A7XN-01 1 170961386 170961386 G A MROH9 Silent p.L370L 0.16 TCGA-E7-A7XN-01 1 178433412 178433412 G A RASAL2 Splice_Site p.X1085_splice 0.15 TCGA-E7-A7XN-01 1 17913957 17913957 G C ARHGEF10L Missense_Mutation p.D14H 0.08 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-E7-A7XN-01 1 180914765 180914765 G C KIAA1614 3'UTR 0.19 TCGA-E7-A7XN-01 1 182798132 182798132 G C NPL 3'UTR 0.19 TCGA-E7-A7XN-01 1 182827713 182827713 C G DHX9 Missense_Mutation p.Q280E 0.20 tolerated(0.33) benign(0.003) TCGA-E7-A7XN-01 1 182921954 182921954 G C SHCBP1L Silent p.P105P 0.15 TCGA-E7-A7XN-01 1 183190000 183190000 G A LAMC2 Missense_Mutation p.E182K 0.11 tolerated(0.47) benign(0.072) TCGA-E7-A7XN-01 1 183201368 183201368 C G LAMC2 Nonsense_Mutation p.S635* 0.14 TCGA-E7-A7XN-01 1 183920164 183920164 C G COLGALT2 Missense_Mutation p.K371N 0.16 deleterious(0.02) possibly_damaging(0.855) TCGA-E7-A7XN-01 1 190423924 190423924 C T BRINP3 Missense_Mutation p.A33T 0.17 tolerated(0.17) benign(0.002) TCGA-E7-A7XN-01 1 19208312 19208312 G A ALDH4A1 Missense_Mutation p.R250W 0.23 deleterious(0) probably_damaging(0.967) TCGA-E7-A7XN-01 1 196250016 196250016 C G KCNT2 Missense_Mutation p.E962Q 0.16 tolerated(0.39) benign(0.085) TCGA-E7-A7XN-01 1 196801134 196801134 A T CFHR1 3'UTR 0.25 TCGA-E7-A7XN-01 1 200973999 200973999 G A KIF21B Silent p.L265L 0.11 TCGA-E7-A7XN-01 1 201332521 201332521 C G TNNT2 Missense_Mutation p.R158P 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-E7-A7XN-01 1 203135020 203135020 G C ADORA1 Missense_Mutation p.D325H 0.11 tolerated(0.06) benign(0.001) TCGA-E7-A7XN-01 1 204423840 204423840 G C PIK3C2B Missense_Mutation p.H675D 0.08 tolerated(0.6) benign(0.215) TCGA-E7-A7XN-01 1 205028387 205028387 C T CNTN2 Silent p.F221F 0.10 TCGA-E7-A7XN-01 1 205497029 205497029 G C CDK18 Silent p.L309L 0.19 TCGA-E7-A7XN-01 1 207245702 207245702 G A PFKFB2 Missense_Mutation p.E502K 0.16 benign(0.016) TCGA-E7-A7XN-01 1 207297598 207297598 C G C4BPA Missense_Mutation p.S198C 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-E7-A7XN-01 1 207646467 207646467 C T CR2 Nonsense_Mutation p.Q641* 0.19 TCGA-E7-A7XN-01 1 208207863 208207863 G C PLXNA2 Missense_Mutation p.I1613M 0.12 tolerated(0.16) benign(0.023) TCGA-E7-A7XN-01 1 21106326 21106326 C T HP1BP3 Missense_Mutation p.E59K 0.17 tolerated_low_confidence(0.13) benign(0.01) TCGA-E7-A7XN-01 1 21329288 21329288 G T EIF4G3 5'UTR 0.17 TCGA-E7-A7XN-01 1 214169998 214169998 G A PROX1 Silent p.T40T 0.17 TCGA-E7-A7XN-01 1 214816665 214816665 G C CENPF Missense_Mutation p.D1662H 0.18 probably_damaging(0.999) TCGA-E7-A7XN-01 1 214832305 214832305 G A CENPF Silent p.L3025L 0.17 TCGA-E7-A7XN-01 1 21605738 21605738 G A ECE1 Silent p.L76L 0.16 TCGA-E7-A7XN-01 1 216462647 216462647 C G USH2A Missense_Mutation p.R649T 0.20 benign(0.055) TCGA-E7-A7XN-01 1 220232104 220232104 C G BPNT1 3'UTR 0.18 TCGA-E7-A7XN-01 1 22148630 22148630 C T LDLRAD2 Intron 0.12 TCGA-E7-A7XN-01 1 22148698 22148698 C G LDLRAD2 Missense_Mutation p.S270C 0.07 deleterious_low_confidence(0.04) benign(0.062) TCGA-E7-A7XN-01 1 22222419 22222419 C G HSPG2 Missense_Mutation p.Q80H 0.10 benign(0.057) TCGA-E7-A7XN-01 1 222902118 222902118 C G BROX Missense_Mutation p.S235C 0.15 tolerated(0.1) benign(0.003) TCGA-E7-A7XN-01 1 226049941 226049941 G C TMEM63A Missense_Mutation p.F354L 0.07 tolerated(0.17) benign(0.252) TCGA-E7-A7XN-01 1 226576408 226576408 C G PARP1 Missense_Mutation p.K222N 0.12 tolerated(0.07) possibly_damaging(0.536) TCGA-E7-A7XN-01 1 226576425 226576425 C G PARP1 Missense_Mutation p.D217H 0.10 deleterious(0.05) benign(0.149) TCGA-E7-A7XN-01 1 226595596 226595596 T C PARP1 Missense_Mutation p.E12G 0.13 deleterious(0) probably_damaging(0.949) TCGA-E7-A7XN-01 1 22816672 22816672 G A ZBTB40 Missense_Mutation p.M77I 0.18 tolerated(0.1) benign(0.14) TCGA-E7-A7XN-01 1 228336365 228336365 G A GUK1 Splice_Site p.X180_splice 0.07 TCGA-E7-A7XN-01 1 229666156 229666156 C G ABCB10 Splice_Site p.X479_splice 0.14 TCGA-E7-A7XN-01 1 231413373 231413373 G C GNPAT 3'UTR 0.21 TCGA-E7-A7XN-01 1 233497931 233497931 C G MLK4 Missense_Mutation p.L482V 0.16 deleterious(0) possibly_damaging(0.694) TCGA-E7-A7XN-01 1 2442190 2442190 G A PANK4 Missense_Mutation p.A622V 0.13 tolerated(1) benign(0.004) TCGA-E7-A7XN-01 1 247013863 247013863 C G AHCTF1 Missense_Mutation p.K1824N 0.14 deleterious(0.04) possibly_damaging(0.603) TCGA-E7-A7XN-01 1 247061536 247061536 C G AHCTF1 Missense_Mutation p.D542H 0.17 deleterious(0) probably_damaging(0.991) TCGA-E7-A7XN-01 1 26516075 26516075 G C CNKSR1 3'UTR 0.17 TCGA-E7-A7XN-01 1 28562644 28562644 C G ATPIF1 5'UTR 0.14 TCGA-E7-A7XN-01 1 31655374 31655374 C G NKAIN1 Intron 0.12 TCGA-E7-A7XN-01 1 31906004 31906004 G A SERINC2 Missense_Mutation p.V411I 0.16 tolerated(1) benign(0.003) TCGA-E7-A7XN-01 1 32154562 32154562 C T COL16A1 Missense_Mutation p.C556Y 0.13 unknown(0) TCGA-E7-A7XN-01 1 35251033 35251033 C T GJB3 Nonsense_Mutation p.R224* 0.16 TCGA-E7-A7XN-01 1 35485132 35485132 G A ZMYM6 Missense_Mutation p.P84S 0.13 tolerated(0.35) probably_damaging(0.99) TCGA-E7-A7XN-01 1 35824634 35824634 C T ZMYM4 Missense_Mutation p.S65L 0.22 tolerated_low_confidence(0.19) benign(0.01) TCGA-E7-A7XN-01 1 36915856 36915856 C T OSCP1 Intron 0.29 TCGA-E7-A7XN-01 1 38332209 38332209 G C INPP5B Missense_Mutation p.L770V 0.17 deleterious(0) possibly_damaging(0.902) TCGA-E7-A7XN-01 1 39919384 39919384 C T MACF1 Silent p.F4857F 0.12 TCGA-E7-A7XN-01 1 40034587 40034587 C G PABPC4 Missense_Mutation p.E255Q 0.15 tolerated(0.13) probably_damaging(0.964) TCGA-E7-A7XN-01 1 40041434 40041434 C T PABPC4 Missense_Mutation p.D64N 0.18 deleterious(0) probably_damaging(0.984) TCGA-E7-A7XN-01 1 40723841 40723841 C T ZMPSTE24 5'UTR 0.18 TCGA-E7-A7XN-01 1 42050020 42050020 G A HIVEP3 Missense_Mutation p.S150F 0.15 possibly_damaging(0.629) TCGA-E7-A7XN-01 1 43132256 43132256 G C PPIH Missense_Mutation p.E155Q 0.09 deleterious(0.03) probably_damaging(0.981) TCGA-E7-A7XN-01 1 44713660 44713660 C G ERI3 Missense_Mutation p.M294I 0.19 deleterious(0.02) possibly_damaging(0.648) TCGA-E7-A7XN-01 1 45241264 45241264 G C RPS8 5'UTR 0.20 TCGA-E7-A7XN-01 1 46724415 46724415 C G RAD54L Missense_Mutation p.Q90E 0.07 tolerated(1) benign(0.014) TCGA-E7-A7XN-01 1 46726471 46726471 G C RAD54L Missense_Mutation p.E184Q 0.25 deleterious(0.04) possibly_damaging(0.619) TCGA-E7-A7XN-01 1 46751426 46751426 G C LRRC41 Missense_Mutation p.S368C 0.11 deleterious(0.03) possibly_damaging(0.843) TCGA-E7-A7XN-01 1 47650692 47650692 G A PDZK1IP1 Missense_Mutation p.S85L 0.07 tolerated(0.11) benign(0.014) TCGA-E7-A7XN-01 1 52854281 52854281 C T ORC1 Missense_Mutation p.E406K 0.13 tolerated(0.07) benign(0.014) TCGA-E7-A7XN-01 1 53925175 53925175 C T DMRTB1 Missense_Mutation p.H17Y 0.19 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 1 54683945 54683945 G C MRPL37 3'UTR 0.11 TCGA-E7-A7XN-01 1 55051512 55051512 G C ACOT11 Missense_Mutation p.E82D 0.11 deleterious(0.03) possibly_damaging(0.869) TCGA-E7-A7XN-01 1 6208929 6208929 G A CHD5 Silent p.L456L 0.09 TCGA-E7-A7XN-01 1 63021642 63021642 G T DOCK7 Missense_Mutation p.S817Y 0.11 deleterious(0) possibly_damaging(0.69) TCGA-E7-A7XN-01 1 63974204 63974204 C T ITGB3BP Missense_Mutation p.E54K 0.14 tolerated(0.21) benign(0.05) TCGA-E7-A7XN-01 1 65656422 65656422 G C AK4 Missense_Mutation p.E59Q 0.10 tolerated(0.13) benign(0.032) TCGA-E7-A7XN-01 1 71318412 71318412 G A PTGER3 3'UTR 0.10 TCGA-E7-A7XN-01 1 79392738 79392738 C T ELTD1 Missense_Mutation p.G306S 0.13 tolerated(0.08) probably_damaging(0.951) TCGA-E7-A7XN-01 1 809712 809712 G A FAM41C 5'Flank 0.08 TCGA-E7-A7XN-01 1 84543999 84543999 C G RP11-486G15.2 5'Flank 0.12 TCGA-E7-A7XN-01 1 85036401 85036401 G C CTBS Silent p.V60V 0.08 TCGA-E7-A7XN-01 1 86591140 86591140 G C COL24A1 Missense_Mutation p.I293M 0.14 tolerated(0.24) benign(0.004) TCGA-E7-A7XN-01 1 86896592 86896592 G C CLCA2 Missense_Mutation p.D175H 0.12 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 1 89729419 89729419 C T GBP5 Silent p.Q454Q 0.14 TCGA-E7-A7XN-01 1 90179927 90179927 G C LRRC8C Missense_Mutation p.D600H 0.17 deleterious(0.03) possibly_damaging(0.905) TCGA-E7-A7XN-01 1 93646200 93646200 C T CCDC18 5'Flank 0.27 TCGA-E7-A7XN-01 20 1517862 1517862 C G SIRPD Missense_Mutation p.E172D 0.25 deleterious_low_confidence(0.05) benign(0.024) TCGA-E7-A7XN-01 20 1552587 1552587 C T SIRPB1 Missense_Mutation p.R177K 0.19 tolerated(0.19) benign(0.007) TCGA-E7-A7XN-01 20 17434510 17434510 G A PCSK2 Missense_Mutation p.D337N 0.11 tolerated(0.68) probably_damaging(1) TCGA-E7-A7XN-01 20 17639291 17639291 T A RRBP1 Missense_Mutation p.Q191L 0.17 tolerated(0.14) benign(0.145) TCGA-E7-A7XN-01 20 1961415 1961415 C G PDYN Missense_Mutation p.E107Q 0.17 tolerated(0.08) possibly_damaging(0.719) TCGA-E7-A7XN-01 20 20031137 20031137 C T CRNKL1 Missense_Mutation p.D222N 0.17 deleterious(0) possibly_damaging(0.449) TCGA-E7-A7XN-01 20 20055855 20055855 G C C20orf26 Missense_Mutation p.E132Q 0.19 deleterious(0.01) possibly_damaging(0.742) TCGA-E7-A7XN-01 20 20056136 20056136 C G C20orf26 Nonsense_Mutation p.S148* 0.12 TCGA-E7-A7XN-01 20 20505503 20505503 C G RALGAPA2 Missense_Mutation p.E1245Q 0.24 deleterious(0.01) possibly_damaging(0.54) TCGA-E7-A7XN-01 20 21142854 21142854 C G RP4-777D9.2 Intron 0.13 TCGA-E7-A7XN-01 20 21494205 21494205 C G NKX2-2 Missense_Mutation p.E35Q 0.21 tolerated(0.36) benign(0.024) TCGA-E7-A7XN-01 20 31022853 31022853 C T ASXL1 Nonsense_Mutation p.Q780* 0.16 TCGA-E7-A7XN-01 20 31024778 31024778 C T ASXL1 Silent p.L1421L 0.15 TCGA-E7-A7XN-01 20 33596513 33596513 G A TRPC4AP Missense_Mutation p.R517C 0.10 deleterious(0) probably_damaging(0.994) TCGA-E7-A7XN-01 20 34055151 34055151 G C CEP250 Missense_Mutation p.E208Q 0.17 probably_damaging(0.999) TCGA-E7-A7XN-01 20 34091585 34091585 G A CEP250 Silent p.L1796L 0.17 TCGA-E7-A7XN-01 20 34505427 34505427 C T PHF20 Missense_Mutation p.S616F 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-E7-A7XN-01 20 35281994 35281994 C G NDRG3 Missense_Mutation p.D353H 0.17 deleterious(0.04) benign(0.422) TCGA-E7-A7XN-01 20 36997710 36997710 C T LBP Silent p.F351F 0.14 TCGA-E7-A7XN-01 20 37126021 37126021 C T RALGAPB Nonsense_Mutation p.R139* 0.17 TCGA-E7-A7XN-01 20 37153584 37153584 G A RALGAPB Missense_Mutation p.D595N 0.18 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 20 3766876 3766876 G C CENPB Missense_Mutation p.F85L 0.16 tolerated(0.2) unknown(0) TCGA-E7-A7XN-01 20 47274676 47274676 C G PREX1 Missense_Mutation p.E658Q 0.11 tolerated(0.19) benign(0.244) TCGA-E7-A7XN-01 20 52199198 52199198 G C ZNF217 Silent p.V56V 0.18 TCGA-E7-A7XN-01 20 57485890 57485890 G C GNAS 3'UTR 0.10 TCGA-E7-A7XN-01 20 61526467 61526467 C G DIDO1 Silent p.V755V 0.15 TCGA-E7-A7XN-01 20 61527713 61527713 C T DIDO1 Missense_Mutation p.E696K 0.11 probably_damaging(0.999) TCGA-E7-A7XN-01 21 30331900 30331900 C G LTN1 Missense_Mutation p.D871H 0.18 deleterious(0) probably_damaging(0.936) TCGA-E7-A7XN-01 21 30437349 30437349 G A CCT8 Silent p.V234V 0.11 TCGA-E7-A7XN-01 21 30437415 30437415 G C CCT8 Missense_Mutation p.I212M 0.13 deleterious(0.01) possibly_damaging(0.595) TCGA-E7-A7XN-01 21 33044014 33044014 C G SCAF4 Missense_Mutation p.E1048Q 0.15 unknown(0) TCGA-E7-A7XN-01 21 33076155 33076155 C G SCAF4 Missense_Mutation p.D82H 0.14 probably_damaging(1) TCGA-E7-A7XN-01 21 33867394 33867394 G C EVA1C Missense_Mutation p.R231T 0.15 deleterious(0) probably_damaging(0.968) TCGA-E7-A7XN-01 21 34116017 34116017 C G PAXBP1 Missense_Mutation p.D747H 0.09 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 21 34166708 34166708 G C C21orf62 Missense_Mutation p.L9V 0.14 tolerated(0.06) benign(0.018) TCGA-E7-A7XN-01 21 34809249 34809249 G C IFNGR2 Missense_Mutation p.D332H 0.13 deleterious(0.05) benign(0.063) TCGA-E7-A7XN-01 21 40834402 40834402 G A SH3BGR Missense_Mutation p.M112I 0.17 deleterious(0.01) possibly_damaging(0.817) TCGA-E7-A7XN-01 21 43309335 43309335 C T C2CD2 Silent p.R663R 0.09 TCGA-E7-A7XN-01 21 46057525 46057525 C G KRTAP10-10 Nonsense_Mutation p.S64* 0.20 TCGA-E7-A7XN-01 21 46066328 46066328 C G TSPEAR Intron 0.16 TCGA-E7-A7XN-01 21 46363700 46363700 C T FAM207A Silent p.V77V 0.14 TCGA-E7-A7XN-01 21 48068369 48068369 G A PRMT2 Splice_Site p.X110_splice 0.13 TCGA-E7-A7XN-01 22 18273609 18273609 C G MICAL3 Missense_Mutation p.Q1966H 0.15 probably_damaging(0.998) TCGA-E7-A7XN-01 22 20102177 20102177 C G TRMT2A Missense_Mutation p.E385Q 0.18 tolerated(0.05) benign(0.097) TCGA-E7-A7XN-01 22 21355679 21355679 C G THAP7 Silent p.P34P 0.12 TCGA-E7-A7XN-01 22 24376861 24376861 G C GSTT1 Missense_Mutation p.I163M 0.14 tolerated(0.07) possibly_damaging(0.682) TCGA-E7-A7XN-01 22 24462941 24462941 G C CABIN1 Missense_Mutation p.D681H 0.07 deleterious(0) possibly_damaging(0.866) TCGA-E7-A7XN-01 22 25155941 25155941 G C PIWIL3 Missense_Mutation p.Q40E 0.12 tolerated(0.42) benign(0.057) TCGA-E7-A7XN-01 22 29650224 29650224 G C EMID1 Missense_Mutation p.L384F 0.17 deleterious(0.02) possibly_damaging(0.897) TCGA-E7-A7XN-01 22 30951555 30951555 G C GAL3ST1 Missense_Mutation p.F219L 0.17 tolerated(0.11) probably_damaging(0.95) TCGA-E7-A7XN-01 22 31334114 31334114 G C MORC2 Missense_Mutation p.I322M 0.14 deleterious(0) benign(0.08) TCGA-E7-A7XN-01 22 36700117 36700117 C T MYH9 Missense_Mutation p.E772K 0.21 probably_damaging(0.999) TCGA-E7-A7XN-01 22 37455372 37455372 C G KCTD17 Missense_Mutation p.S176C 0.12 deleterious(0.01) benign(0.284) TCGA-E7-A7XN-01 22 38043485 38043485 G C SH3BP1 Missense_Mutation p.E386Q 0.13 tolerated(0.23) benign(0.055) TCGA-E7-A7XN-01 22 38266335 38266335 G A EIF3L Silent p.L244L 0.24 TCGA-E7-A7XN-01 22 39499691 39499691 C T APOBEC3H Intron 0.14 TCGA-E7-A7XN-01 22 41551100 41551100 C T EP300 Nonsense_Mutation p.Q1082* 0.14 TCGA-E7-A7XN-01 22 41574216 41574216 G A EP300 Silent p.Q2167Q 0.19 TCGA-E7-A7XN-01 22 43539109 43539109 G C MCAT Silent p.L82L 0.13 TCGA-E7-A7XN-01 22 43579140 43579140 C T TTLL12 Missense_Mutation p.E65K 0.16 tolerated(0.21) benign(0.197) TCGA-E7-A7XN-01 22 44592250 44592250 G C PARVG Missense_Mutation p.Q222H 0.12 deleterious(0) benign(0.213) TCGA-E7-A7XN-01 22 46725347 46725347 C T GTSE1 Silent p.C673C 0.17 TCGA-E7-A7XN-01 22 50647058 50647058 C G SELO Silent p.L284L 0.14 TCGA-E7-A7XN-01 2 101521208 101521208 G A NPAS2 5'UTR 0.19 TCGA-E7-A7XN-01 2 105858706 105858706 G C GPR45 Missense_Mutation p.D131H 0.13 deleterious(0) probably_damaging(0.99) TCGA-E7-A7XN-01 2 105889361 105889361 C T TGFBRAP1 Silent p.L641L 0.19 TCGA-E7-A7XN-01 2 10930949 10930949 C G PDIA6 Missense_Mutation p.E199Q 0.18 tolerated(0.07) possibly_damaging(0.51) TCGA-E7-A7XN-01 2 112630977 112630977 C G ANAPC1 Missense_Mutation p.E146Q 0.08 tolerated(0.23) benign(0.179) TCGA-E7-A7XN-01 2 113496498 113496498 G A CKAP2L Missense_Mutation p.L714F 0.13 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 2 11354586 11354586 C G ROCK2 Missense_Mutation p.R647T 0.16 deleterious(0.03) possibly_damaging(0.467) TCGA-E7-A7XN-01 2 119699940 119699940 C T MARCO Missense_Mutation p.H22Y 0.15 deleterious(0.04) benign(0.043) TCGA-E7-A7XN-01 2 127834214 127834214 G C BIN1 Missense_Mutation p.F51L 0.18 tolerated(0.06) probably_damaging(1) TCGA-E7-A7XN-01 2 128700004 128700004 C T SAP130 Silent p.L1029L 0.11 TCGA-E7-A7XN-01 2 130877918 130877918 G C POTEF Silent p.L57L 0.13 TCGA-E7-A7XN-01 2 130951671 130951671 C T TUBA3E Silent p.L248L 0.05 TCGA-E7-A7XN-01 2 132238010 132238010 G A TUBA3D Silent p.L248L 0.11 TCGA-E7-A7XN-01 2 135738566 135738566 C T MAP3K19 Missense_Mutation p.D1249N 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 2 135878476 135878476 C T RAB3GAP1 Nonsense_Mutation p.Q246* 0.12 TCGA-E7-A7XN-01 2 136071137 136071137 C T ZRANB3 Missense_Mutation p.M296I 0.22 deleterious(0.04) benign(0.033) TCGA-E7-A7XN-01 2 141641528 141641528 C T LRP1B Missense_Mutation p.D1343N 0.11 benign(0.003) TCGA-E7-A7XN-01 2 149840233 149840233 G C KIF5C Missense_Mutation p.D557H 0.16 deleterious(0) probably_damaging(0.992) TCGA-E7-A7XN-01 2 152695610 152695610 G A CACNB4 3'UTR 0.15 TCGA-E7-A7XN-01 2 157184435 157184435 C T NR4A2 Silent p.V362V 0.40 TCGA-E7-A7XN-01 2 158637047 158637047 C T ACVR1 Missense_Mutation p.E45K 0.13 tolerated(0.88) benign(0.03) TCGA-E7-A7XN-01 2 162894854 162894854 C T DPP4 Missense_Mutation p.E191K 0.18 tolerated(0.28) benign(0.004) TCGA-E7-A7XN-01 2 1651941 1651941 C T PXDN Intron 0.16 TCGA-E7-A7XN-01 2 166019214 166019214 C T SCN3A Silent p.L273L 0.16 TCGA-E7-A7XN-01 2 166019298 166019298 C G SCN3A Missense_Mutation p.K245N 0.12 deleterious(0) probably_damaging(0.985) TCGA-E7-A7XN-01 2 166019331 166019331 C G SCN3A Missense_Mutation p.K234N 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-E7-A7XN-01 2 166020343 166020343 C G SCN3A Intron 0.10 TCGA-E7-A7XN-01 2 166198841 166198841 C G SCN2A Silent p.L808L 0.10 TCGA-E7-A7XN-01 2 166903421 166903421 G C SCN1A Missense_Mutation p.F412L 0.18 deleterious(0) probably_damaging(0.994) TCGA-E7-A7XN-01 2 167163512 167163512 G A SCN9A Missense_Mutation p.P111S 0.26 deleterious(0.01) probably_damaging(0.936) TCGA-E7-A7XN-01 2 170066055 170066055 C G LRP2 Missense_Mutation p.R2126T 0.19 possibly_damaging(0.881) TCGA-E7-A7XN-01 2 177036599 177036599 C T HOXD3 Missense_Mutation p.P299L 0.22 deleterious(0.01) probably_damaging(0.913) TCGA-E7-A7XN-01 2 178416445 178416445 C G TTC30B Missense_Mutation p.L349F 0.14 deleterious(0.02) probably_damaging(0.91) TCGA-E7-A7XN-01 2 179412812 179412812 C T TTN Missense_Mutation p.E31181K 0.19 TCGA-E7-A7XN-01 2 179422195 179422195 C G TTN Missense_Mutation p.G29265A 0.16 TCGA-E7-A7XN-01 2 179433019 179433019 C T TTN Missense_Mutation p.R25947K 0.19 TCGA-E7-A7XN-01 2 179445025 179445025 G A TTN Intron 0.12 TCGA-E7-A7XN-01 2 179480470 179480470 C G TTN Missense_Mutation p.V16120L 0.12 TCGA-E7-A7XN-01 2 179481234 179481234 C G TTN Missense_Mutation p.R16095P 0.09 TCGA-E7-A7XN-01 2 179579878 179579878 C G TTN Missense_Mutation p.D8679H 0.18 TCGA-E7-A7XN-01 2 179592954 179592954 C G TTN Missense_Mutation p.E6533Q 0.21 TCGA-E7-A7XN-01 2 179612313 179612313 C T TTN Intron 0.12 TCGA-E7-A7XN-01 2 183817958 183817958 G C NCKAP1 Nonsense_Mutation p.S758* 0.19 TCGA-E7-A7XN-01 2 183948270 183948270 G A DUSP19 Silent p.L87L 0.13 TCGA-E7-A7XN-01 2 189904098 189904098 G C COL5A2 Silent p.L1275L 0.14 TCGA-E7-A7XN-01 2 197643678 197643678 G A GTF3C3 Silent p.L444L 0.10 TCGA-E7-A7XN-01 2 198968662 198968662 T C PLCL1 Splice_Site p.X1035_splice 0.25 TCGA-E7-A7XN-01 2 200136881 200136881 G C SATB2 3'UTR 0.21 TCGA-E7-A7XN-01 2 20138060 20138060 G C WDR35 Missense_Mutation p.Q688E 0.18 tolerated(0.28) benign(0.063) TCGA-E7-A7XN-01 2 202625889 202625889 G C ALS2 Silent p.L276L 0.17 TCGA-E7-A7XN-01 2 203676481 203676481 C G ICA1L Missense_Mutation p.E300Q 0.07 tolerated(0.19) benign(0.309) TCGA-E7-A7XN-01 2 207170834 207170834 G C ZDBF2 Missense_Mutation p.D528H 0.13 deleterious(0) probably_damaging(0.969) TCGA-E7-A7XN-01 2 207988724 207988724 C T KLF7 Silent p.K169K 0.14 TCGA-E7-A7XN-01 2 210559835 210559835 G A MAP2 Missense_Mutation p.E981K 0.08 deleterious_low_confidence(0.02) benign(0.41) TCGA-E7-A7XN-01 2 210595046 210595046 C T MAP2 Silent p.I1803I 0.08 TCGA-E7-A7XN-01 2 216274360 216274360 G A FN1 Missense_Mutation p.S742L 0.30 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 2 216286816 216286816 C G FN1 Missense_Mutation p.R515P 0.15 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 2 219137570 219137570 G A PNKD Intron 0.16 TCGA-E7-A7XN-01 2 219530894 219530894 G A RNF25 Silent p.L139L 0.14 TCGA-E7-A7XN-01 2 219532820 219532820 G A RNF25 Missense_Mutation p.S90L 0.12 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 2 219532840 219532840 G C RNF25 Missense_Mutation p.I83M 0.14 deleterious(0) probably_damaging(0.96) TCGA-E7-A7XN-01 2 219532976 219532976 G A RNF25 Nonsense_Mutation p.Q69* 0.12 TCGA-E7-A7XN-01 2 219561852 219561852 G A STK36 Missense_Mutation p.E893K 0.13 tolerated(0.78) benign(0.003) TCGA-E7-A7XN-01 2 220166950 220166950 G A PTPRN Silent p.S301S 0.12 TCGA-E7-A7XN-01 2 228883636 228883636 C T SPHKAP Missense_Mutation p.R645K 0.15 tolerated(1) benign(0.003) TCGA-E7-A7XN-01 2 228890180 228890180 T C SPHKAP Missense_Mutation p.K124R 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-E7-A7XN-01 2 228890211 228890211 G C SPHKAP Missense_Mutation p.L114V 0.15 deleterious(0) possibly_damaging(0.783) TCGA-E7-A7XN-01 2 234106777 234106777 C T INPP5D Silent p.I898I 0.18 TCGA-E7-A7XN-01 2 234436214 234436214 C G USP40 Missense_Mutation p.D533H 0.41 deleterious(0) probably_damaging(0.979) TCGA-E7-A7XN-01 2 234637770 234637770 G A UGT1A3 5'UTR 0.18 TCGA-E7-A7XN-01 2 238285641 238285641 G C COL6A3 Silent p.V948V 0.11 TCGA-E7-A7XN-01 2 242038916 242038916 C T MTERFD2 Missense_Mutation p.E139K 0.15 tolerated(0.09) possibly_damaging(0.609) TCGA-E7-A7XN-01 2 242039121 242039121 C G MTERFD2 Missense_Mutation p.R70S 0.17 tolerated(0.17) benign(0.077) TCGA-E7-A7XN-01 2 242072387 242072387 C G PASK Silent p.R455R 0.10 TCGA-E7-A7XN-01 2 242203922 242203922 C G HDLBP Missense_Mutation p.E59Q 0.17 tolerated(0.43) benign(0.017) TCGA-E7-A7XN-01 2 242755694 242755694 C T NEU4 Missense_Mutation p.R18C 0.14 tolerated(0.05) possibly_damaging(0.854) TCGA-E7-A7XN-01 2 25972727 25972727 G C ASXL2 Silent p.L566L 0.07 TCGA-E7-A7XN-01 2 25972943 25972943 G A ASXL2 Silent p.V494V 0.12 TCGA-E7-A7XN-01 2 25991658 25991658 G A ASXL2 Missense_Mutation p.S195L 0.13 tolerated(1) benign(0.003) TCGA-E7-A7XN-01 2 27680610 27680610 C T IFT172 Missense_Mutation p.E1042K 0.19 tolerated(0.19) benign(0.06) TCGA-E7-A7XN-01 2 36583686 36583686 G C CRIM1 Missense_Mutation p.C84S 0.12 deleterious(0) possibly_damaging(0.478) TCGA-E7-A7XN-01 2 37487426 37487426 C G PRKD3 Missense_Mutation p.M662I 0.17 deleterious(0) possibly_damaging(0.896) TCGA-E7-A7XN-01 2 38536543 38536543 C G ATL2 Missense_Mutation p.R350T 0.17 deleterious(0) possibly_damaging(0.46) TCGA-E7-A7XN-01 2 42522291 42522291 G A EML4 Silent p.V415V 0.24 TCGA-E7-A7XN-01 2 44457614 44457614 G A PPM1B Missense_Mutation p.M399I 0.18 tolerated_low_confidence(0.4) benign(0) TCGA-E7-A7XN-01 2 47612302 47612302 C G EPCAM Intron 0.12 TCGA-E7-A7XN-01 2 47639622 47639622 C T MSH2 Nonsense_Mutation p.Q239* 0.11 TCGA-E7-A7XN-01 2 61708412 61708412 G C XPO1 Missense_Mutation p.Q993E 0.08 tolerated(0.12) probably_damaging(0.953) TCGA-E7-A7XN-01 2 62069260 62069260 G A FAM161A Missense_Mutation p.S140F 0.19 tolerated(0.65) benign(0.249) TCGA-E7-A7XN-01 2 70408762 70408762 G C C2orf42 Nonsense_Mutation p.S119* 0.15 TCGA-E7-A7XN-01 2 74327745 74327745 C G TET3 Missense_Mutation p.S1142C 0.18 deleterious(0.01) possibly_damaging(0.89) TCGA-E7-A7XN-01 2 74489306 74489306 C A SLC4A5 Nonsense_Mutation p.E257* 0.12 TCGA-E7-A7XN-01 2 74757255 74757255 C G HTRA2 Nonsense_Mutation p.S41* 0.20 TCGA-E7-A7XN-01 2 74834320 74834320 C G M1AP Missense_Mutation p.E153Q 0.18 tolerated(0.16) benign(0.135) TCGA-E7-A7XN-01 2 85571416 85571416 G C RETSAT Missense_Mutation p.L438V 0.11 tolerated(0.1) benign(0.005) TCGA-E7-A7XN-01 2 86676939 86676939 G C KDM3A Missense_Mutation p.E66Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 2 9552439 9552439 C G ITGB1BP1 Missense_Mutation p.E83Q 0.13 tolerated(0.34) benign(0.026) TCGA-E7-A7XN-01 2 9650239 9650239 G A ADAM17 Missense_Mutation p.H405Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 2 96955031 96955031 C T SNRNP200 Silent p.L1009L 0.13 TCGA-E7-A7XN-01 2 97749450 97749450 G C FAHD2B 3'UTR 0.07 TCGA-E7-A7XN-01 2 99449420 99449420 C T KIAA1211L Missense_Mutation p.D94N 0.16 deleterious(0) possibly_damaging(0.741) TCGA-E7-A7XN-01 3 108211377 108211377 G C MYH15 Missense_Mutation p.Q301E 0.19 deleterious(0) possibly_damaging(0.791) TCGA-E7-A7XN-01 3 111831982 111831982 C G C3orf52 Intron 0.25 TCGA-E7-A7XN-01 3 111842619 111842619 C T GCSAM Missense_Mutation p.D76N 0.15 deleterious(0.03) possibly_damaging(0.507) TCGA-E7-A7XN-01 3 112738497 112738497 G C C3orf17 5'UTR 0.31 TCGA-E7-A7XN-01 3 113508676 113508676 C G ATP6V1A Missense_Mutation p.S326C 0.11 tolerated(0.06) probably_damaging(1) TCGA-E7-A7XN-01 3 113765547 113765547 T C KIAA1407 Silent p.S54S 0.14 TCGA-E7-A7XN-01 3 113804602 113804602 C G QTRTD1 Missense_Mutation p.L379V 0.14 deleterious(0) probably_damaging(0.99) TCGA-E7-A7XN-01 3 120469634 120469634 G C GTF2E1 Missense_Mutation p.E79Q 0.14 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 3 121215688 121215688 G A POLQ Nonsense_Mutation p.Q749* 0.07 TCGA-E7-A7XN-01 3 121413748 121413748 C G GOLGB1 Missense_Mutation p.E1874D 0.17 possibly_damaging(0.747) TCGA-E7-A7XN-01 3 122172734 122172734 C G KPNA1 Missense_Mutation p.E183Q 0.16 tolerated(0.33) probably_damaging(0.999) TCGA-E7-A7XN-01 3 122284793 122284793 C T DTX3L Missense_Mutation p.S92L 0.15 tolerated(0.14) benign(0.003) TCGA-E7-A7XN-01 3 123166691 123166691 G A ADCY5 Silent p.F234F 0.10 TCGA-E7-A7XN-01 3 12475489 12475489 G C PPARG Missense_Mutation p.E455Q 0.18 deleterious(0.03) benign(0.03) TCGA-E7-A7XN-01 3 125298733 125298733 T A OSBPL11 Missense_Mutation p.S129C 0.19 deleterious(0) probably_damaging(0.994) TCGA-E7-A7XN-01 3 127540569 127540569 G C MGLL Missense_Mutation p.F41L 0.11 deleterious(0.01) possibly_damaging(0.547) TCGA-E7-A7XN-01 3 133614398 133614398 G T RAB6B 5'UTR 0.26 TCGA-E7-A7XN-01 3 133614408 133614408 G C RAB6B 5'UTR 0.36 TCGA-E7-A7XN-01 3 13377104 13377104 G A NUP210 Silent p.I1231I 0.14 TCGA-E7-A7XN-01 3 13418988 13418988 C T NUP210 Missense_Mutation p.D374N 0.16 deleterious(0) probably_damaging(0.95) TCGA-E7-A7XN-01 3 136141832 136141832 C T STAG1 Missense_Mutation p.E569K 0.12 deleterious(0) possibly_damaging(0.589) TCGA-E7-A7XN-01 3 137885986 137885986 G C DBR1 Silent p.L217L 0.21 TCGA-E7-A7XN-01 3 139102140 139102140 C T COPB2 Silent p.Q47Q 0.14 TCGA-E7-A7XN-01 3 139172008 139172008 C G RBP2 Missense_Mutation p.E119Q 0.11 deleterious(0.01) possibly_damaging(0.841) TCGA-E7-A7XN-01 3 140251268 140251268 G T CLSTN2 Missense_Mutation p.D483Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 3 141535745 141535745 C T GRK7 Silent p.F505F 0.15 TCGA-E7-A7XN-01 3 142031975 142031975 C T XRN1 Intron 0.16 TCGA-E7-A7XN-01 3 15288273 15288273 T G CAPN7 Missense_Mutation p.I682S 0.09 deleterious(0) probably_damaging(0.923) TCGA-E7-A7XN-01 3 15288279 15288279 C T CAPN7 Missense_Mutation p.S684L 0.07 tolerated(0.08) benign(0.004) TCGA-E7-A7XN-01 3 154033931 154033931 C T DHX36 Missense_Mutation p.E89K 0.15 tolerated(0.17) benign(0.14) TCGA-E7-A7XN-01 3 15520507 15520507 C G COLQ Missense_Mutation p.E124Q 0.15 deleterious(0.03) unknown(0) TCGA-E7-A7XN-01 3 169511388 169511388 G C LRRC34 3'UTR 0.17 TCGA-E7-A7XN-01 3 169539714 169539714 C G LRRIQ4 Nonsense_Mutation p.S2* 0.07 TCGA-E7-A7XN-01 3 169539937 169539937 C G LRRIQ4 Silent p.L76L 0.15 TCGA-E7-A7XN-01 3 172607390 172607390 C G SPATA16 Missense_Mutation p.M560I 0.14 deleterious(0.04) benign(0.043) TCGA-E7-A7XN-01 3 183774037 183774037 G A HTR3C Missense_Mutation p.E118K 0.19 tolerated(0.45) benign(0.02) TCGA-E7-A7XN-01 3 186459949 186459949 C T KNG1 Silent p.I588I 0.17 TCGA-E7-A7XN-01 3 186501371 186501371 C T EIF4A2 5'UTR 0.11 TCGA-E7-A7XN-01 3 186760546 186760546 C T ST6GAL1 Silent p.L19L 0.17 TCGA-E7-A7XN-01 3 189612186 189612186 C G TP63 Silent p.L646L 0.22 TCGA-E7-A7XN-01 3 191888250 191888250 C T FGF12 Missense_Mutation p.E204K 0.18 tolerated(0.13) benign(0.019) TCGA-E7-A7XN-01 3 193002713 193002713 G C ATP13A5 Missense_Mutation p.I1072M 0.11 deleterious(0.01) probably_damaging(0.91) TCGA-E7-A7XN-01 3 194081015 194081015 G C LRRC15 Missense_Mutation p.S259C 0.19 deleterious(0) probably_damaging(0.992) TCGA-E7-A7XN-01 3 195516581 195516581 T A MUC4 Missense_Mutation p.T624S 0.15 unknown(0) TCGA-E7-A7XN-01 3 24006504 24006504 C G NR1D2 Missense_Mutation p.H395D 0.10 tolerated(0.57) benign(0.008) TCGA-E7-A7XN-01 3 33877665 33877665 C T PDCD6IP Nonsense_Mutation p.R327* 0.12 TCGA-E7-A7XN-01 3 33886985 33886985 C G PDCD6IP Missense_Mutation p.H521D 0.23 deleterious(0.01) possibly_damaging(0.581) TCGA-E7-A7XN-01 3 38045803 38045803 G A VILL Missense_Mutation p.M621I 0.33 deleterious(0) benign(0.045) TCGA-E7-A7XN-01 3 38104127 38104127 G A DLEC1 Missense_Mutation p.R310K 0.23 tolerated(0.12) possibly_damaging(0.828) TCGA-E7-A7XN-01 3 3886952 3886952 G C LRRN1 Missense_Mutation p.M209I 0.13 deleterious(0.01) benign(0.088) TCGA-E7-A7XN-01 3 39374924 39374924 C G CCR8 3'UTR 0.18 TCGA-E7-A7XN-01 3 40453376 40453376 C G ENTPD3 Silent p.V120V 0.10 TCGA-E7-A7XN-01 3 42727309 42727309 G C KLHL40 Missense_Mutation p.E67Q 0.33 deleterious(0.03) possibly_damaging(0.451) TCGA-E7-A7XN-01 3 44541961 44541961 G A ZNF852 Missense_Mutation p.S103L 0.23 tolerated(0.23) benign(0.019) TCGA-E7-A7XN-01 3 44869779 44869779 G C KIF15 Missense_Mutation p.R977T 0.10 tolerated(0.64) benign(0.388) TCGA-E7-A7XN-01 3 46945099 46945099 G C PTH1R Missense_Mutation p.E579Q 0.15 tolerated(0.17) benign(0.019) TCGA-E7-A7XN-01 3 47163962 47163962 G A SETD2 Nonsense_Mutation p.Q722* 0.18 TCGA-E7-A7XN-01 3 47164447 47164447 G A SETD2 Missense_Mutation p.S560L 0.15 deleterious_low_confidence(0.02) benign(0.293) TCGA-E7-A7XN-01 3 47468688 47468688 G C SCAP Silent p.V232V 0.08 TCGA-E7-A7XN-01 3 47619074 47619074 C T CSPG5 Missense_Mutation p.E148K 0.15 deleterious_low_confidence(0.03) benign(0.038) TCGA-E7-A7XN-01 3 49725032 49725032 C T MST1 Silent p.T104T 0.11 TCGA-E7-A7XN-01 3 50005788 50005788 G A RBM6 Silent p.V310V 0.15 TCGA-E7-A7XN-01 3 5236909 5236909 C G EDEM1 Missense_Mutation p.I175M 0.17 tolerated(0.09) probably_damaging(0.967) TCGA-E7-A7XN-01 3 52437805 52437805 G C BAP1 Silent p.L452L 0.19 TCGA-E7-A7XN-01 3 52526301 52526301 C T NISCH Missense_Mutation p.H1440Y 0.15 tolerated(0.07) possibly_damaging(0.775) TCGA-E7-A7XN-01 3 55043460 55043460 G A CACNA2D3 Missense_Mutation p.M955I 0.14 tolerated(0.4) benign(0.003) TCGA-E7-A7XN-01 3 57543279 57543279 C A PDE12 Missense_Mutation p.F391L 0.20 tolerated(0.13) benign(0.309) TCGA-E7-A7XN-01 3 57543322 57543322 G C PDE12 Missense_Mutation p.E406Q 0.10 tolerated(0.59) benign(0.006) TCGA-E7-A7XN-01 3 64133257 64133257 C G PRICKLE2 Missense_Mutation p.Q303H 0.16 tolerated(0.07) benign(0.348) TCGA-E7-A7XN-01 3 66449420 66449420 G A LRIG1 Silent p.F402F 0.17 TCGA-E7-A7XN-01 3 69028848 69028848 G C EOGT Missense_Mutation p.F351L 0.19 deleterious(0) possibly_damaging(0.682) TCGA-E7-A7XN-01 3 69126979 69126979 G A UBA3 Silent p.F51F 0.20 TCGA-E7-A7XN-01 3 77666886 77666886 G C ROBO2 Missense_Mutation p.L1188F 0.15 deleterious(0.01) possibly_damaging(0.587) TCGA-E7-A7XN-01 3 9516147 9516147 C T SETD5 Missense_Mutation p.S1171L 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-E7-A7XN-01 3 98536636 98536636 C T DCBLD2 Missense_Mutation p.E397K 0.06 tolerated(0.22) benign(0.395) TCGA-E7-A7XN-01 3 9953193 9953193 C G IL17RE Nonsense_Mutation p.S380* 0.11 TCGA-E7-A7XN-01 4 103189214 103189214 G T SLC39A8 Nonsense_Mutation p.S288* 0.11 TCGA-E7-A7XN-01 4 104115599 104115599 C G CENPE Splice_Site p.X187_splice 0.20 TCGA-E7-A7XN-01 4 106967792 106967792 G C TBCK Missense_Mutation p.L873V 0.20 deleterious(0) probably_damaging(0.996) TCGA-E7-A7XN-01 4 113568507 113568507 G A LARP7 Missense_Mutation p.E274K 0.14 tolerated(0.31) benign(0.39) TCGA-E7-A7XN-01 4 114279943 114279943 C G ANK2 Missense_Mutation p.S3390C 0.17 probably_damaging(0.967) TCGA-E7-A7XN-01 4 119673190 119673190 G C SEC24D Silent p.V556V 0.13 TCGA-E7-A7XN-01 4 119953034 119953034 C G SYNPO2 Missense_Mutation p.S1035C 0.17 tolerated(0.22) benign(0.012) TCGA-E7-A7XN-01 4 120422327 120422327 C T PDE5A Missense_Mutation p.E830K 0.17 tolerated(0.48) benign(0.071) TCGA-E7-A7XN-01 4 121957872 121957872 G A NDNF Silent p.L418L 0.16 TCGA-E7-A7XN-01 4 122078329 122078329 G A TNIP3 Nonsense_Mutation p.Q172* 0.14 TCGA-E7-A7XN-01 4 123249265 123249265 G A KIAA1109 Missense_Mutation p.E3668K 0.09 benign(0.079) TCGA-E7-A7XN-01 4 126372224 126372224 G A FAT4 Silent p.K3351K 0.18 TCGA-E7-A7XN-01 4 126411454 126411454 C T FAT4 Nonsense_Mutation p.Q4493* 0.10 TCGA-E7-A7XN-01 4 13338902 13338902 G A HSP90AB2P RNA 0.22 TCGA-E7-A7XN-01 4 1347046 1347046 C G UVSSA Missense_Mutation p.S260C 0.35 tolerated(0.2) benign(0.003) TCGA-E7-A7XN-01 4 13481126 13481126 G C RAB28 Missense_Mutation p.Q34E 0.30 tolerated(0.2) benign(0.028) TCGA-E7-A7XN-01 4 140375562 140375562 A T RAB33B Silent p.R71R 0.14 TCGA-E7-A7XN-01 4 146026785 146026785 G C ABCE1 Missense_Mutation p.Q44H 0.14 tolerated(0.1) benign(0.243) TCGA-E7-A7XN-01 4 146463793 146463793 C T SMAD1 Nonsense_Mutation p.Q240* 0.18 TCGA-E7-A7XN-01 4 146467968 146467968 G A SMAD1 Missense_Mutation p.D297N 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-E7-A7XN-01 4 148555556 148555556 G C TMEM184C Missense_Mutation p.E430Q 0.16 tolerated(0.16) benign(0.001) TCGA-E7-A7XN-01 4 151773603 151773603 C G LRBA Missense_Mutation p.E1087Q 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.545) TCGA-E7-A7XN-01 4 160251091 160251091 G C RAPGEF2 Missense_Mutation p.E250Q 0.19 tolerated(0.06) benign(0.342) TCGA-E7-A7XN-01 4 16258195 16258195 C A TAPT1-AS1 RNA 0.36 TCGA-E7-A7XN-01 4 165962176 165962176 C T TRIM60 Nonsense_Mutation p.R318* 0.13 TCGA-E7-A7XN-01 4 170983085 170983085 C T AADAT Silent p.L398L 0.16 TCGA-E7-A7XN-01 4 178352919 178352919 G A AGA Silent p.F328F 0.12 TCGA-E7-A7XN-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.29 deleterious(0.01) possibly_damaging(0.594) TCGA-E7-A7XN-01 4 187004198 187004198 G A TLR3 Missense_Mutation p.R453K 0.13 tolerated(0.88) benign(0) TCGA-E7-A7XN-01 4 1959760 1959760 C G WHSC1 Missense_Mutation p.I994M 0.38 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 4 26959236 26959236 C T STIM2 Silent p.F95F 0.20 TCGA-E7-A7XN-01 4 2877795 2877795 G A ADD1 Missense_Mutation p.M51I 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-E7-A7XN-01 4 3319682 3319682 G A RGS12 Silent p.L595L 0.13 TCGA-E7-A7XN-01 4 42415017 42415017 G A ATP8A1 Silent p.F1137F 0.12 TCGA-E7-A7XN-01 4 47944133 47944133 G A CNGA1 Missense_Mutation p.S230L 0.35 deleterious(0) possibly_damaging(0.532) TCGA-E7-A7XN-01 4 52861337 52861337 C G LRRC66 Missense_Mutation p.Q617H 0.22 tolerated(0.36) benign(0.049) TCGA-E7-A7XN-01 4 56831889 56831889 C T CEP135 Missense_Mutation p.S303F 0.11 deleterious(0) benign(0.431) TCGA-E7-A7XN-01 4 65145773 65145773 G C TECRL 3'UTR 0.16 TCGA-E7-A7XN-01 4 7045475 7045475 G A TADA2B Missense_Mutation p.G57R 0.38 deleterious(0.01) possibly_damaging(0.695) TCGA-E7-A7XN-01 4 74280809 74280809 A T ALB Missense_Mutation p.R372S 0.11 deleterious(0) probably_damaging(0.993) TCGA-E7-A7XN-01 4 74607387 74607387 G A IL8 Missense_Mutation p.E65K 0.09 deleterious(0.02) probably_damaging(1) TCGA-E7-A7XN-01 4 76882458 76882458 G C SDAD1 Missense_Mutation p.I395M 0.17 deleterious(0.01) possibly_damaging(0.493) TCGA-E7-A7XN-01 4 77659989 77659989 G T SHROOM3 Silent p.G221G 0.10 TCGA-E7-A7XN-01 4 78527039 78527039 C T CXCL13 Missense_Mutation p.S7F 0.15 tolerated(0.17) benign(0.432) TCGA-E7-A7XN-01 4 83349499 83349499 C G HNRNPDL Missense_Mutation p.D182H 0.14 deleterious(0.03) possibly_damaging(0.46) TCGA-E7-A7XN-01 4 90034116 90034116 G A TIGD2 5'UTR 0.22 TCGA-E7-A7XN-01 4 94690400 94690400 G A GRID2 Silent p.L800L 0.20 TCGA-E7-A7XN-01 5 10235328 10235328 G C FAM173B Missense_Mutation p.Q164E 0.10 tolerated(0.14) possibly_damaging(0.868) TCGA-E7-A7XN-01 5 1057746 1057746 T A SLC12A7 Missense_Mutation p.R956W 0.17 deleterious(0) benign(0.031) TCGA-E7-A7XN-01 5 118506141 118506141 C T DMXL1 Silent p.I1885I 0.14 TCGA-E7-A7XN-01 5 118582839 118582839 G A DMXL1 Missense_Mutation p.M3003I 0.13 deleterious(0.01) benign(0.064) TCGA-E7-A7XN-01 5 120021821 120021821 C G PRR16 Missense_Mutation p.S88C 0.18 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-E7-A7XN-01 5 127624244 127624244 C T FBN2 Missense_Mutation p.D2215N 0.21 tolerated(0.28) possibly_damaging(0.58) TCGA-E7-A7XN-01 5 131993887 131993887 G A IL13 Silent p.P3P 0.15 TCGA-E7-A7XN-01 5 134146935 134146935 G A DDX46 Missense_Mutation p.E725K 0.16 tolerated(0.16) benign(0.065) TCGA-E7-A7XN-01 5 134147521 134147521 G A DDX46 Missense_Mutation p.D808N 0.22 deleterious(0.03) probably_damaging(0.91) TCGA-E7-A7XN-01 5 134147527 134147527 G A DDX46 Missense_Mutation p.A810T 0.19 tolerated(0.43) benign(0.146) TCGA-E7-A7XN-01 5 134670751 134670751 G T H2AFY Missense_Mutation p.S345Y 0.14 deleterious(0) possibly_damaging(0.892) TCGA-E7-A7XN-01 5 137518573 137518573 G C KIF20A Missense_Mutation p.K242N 0.08 tolerated(0.07) benign(0.422) TCGA-E7-A7XN-01 5 138655105 138655105 C G MATR3 Missense_Mutation p.S506C 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-E7-A7XN-01 5 138718195 138718195 G A SLC23A1 Silent p.L46L 0.10 TCGA-E7-A7XN-01 5 138718196 138718196 G A SLC23A1 Silent p.I45I 0.12 TCGA-E7-A7XN-01 5 140056909 140056909 C A HARS Intron 0.11 TCGA-E7-A7XN-01 5 140203314 140203314 G A PCDHA5 Missense_Mutation p.D652N 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-E7-A7XN-01 5 140230219 140230219 C T PCDHA9 Silent p.L713L 0.11 TCGA-E7-A7XN-01 5 140230278 140230278 C T PCDHA9 Missense_Mutation p.A733V 0.20 tolerated_low_confidence(0.06) benign(0.002) TCGA-E7-A7XN-01 5 140235895 140235895 C T PCDHA10 Missense_Mutation p.R88W 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.833) TCGA-E7-A7XN-01 5 140348889 140348889 C G PCDHAC2 Silent p.L846L 0.08 TCGA-E7-A7XN-01 5 140712171 140712171 G C PCDHGA1 Missense_Mutation p.Q640H 0.14 deleterious_low_confidence(0.01) benign(0.33) TCGA-E7-A7XN-01 5 140773778 140773778 G C PCDHGA8 Silent p.L466L 0.14 TCGA-E7-A7XN-01 5 141331125 141331125 G C PCDH12 Missense_Mutation p.Q971E 0.21 deleterious(0.03) possibly_damaging(0.459) TCGA-E7-A7XN-01 5 14297232 14297232 G C TRIO Missense_Mutation p.E410Q 0.19 possibly_damaging(0.482) TCGA-E7-A7XN-01 5 14498739 14498739 G C TRIO Silent p.L2774L 0.09 TCGA-E7-A7XN-01 5 145524039 145524039 C A LARS Nonsense_Mutation p.E551* 0.18 TCGA-E7-A7XN-01 5 153432740 153432740 G A MFAP3 Missense_Mutation p.E186K 0.10 deleterious(0) benign(0.341) TCGA-E7-A7XN-01 5 156476141 156476141 G A HAVCR1 Missense_Mutation p.S230F 0.12 tolerated(0.13) probably_damaging(0.919) TCGA-E7-A7XN-01 5 170221248 170221248 G C GABRP Missense_Mutation p.Q62H 0.12 tolerated(0.15) benign(0.353) TCGA-E7-A7XN-01 5 172196648 172196648 C G DUSP1 Missense_Mutation p.K221N 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-E7-A7XN-01 5 172755067 172755067 G A STC2 Missense_Mutation p.R44C 0.15 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 5 178392389 178392389 T C ZNF454 Silent p.Y328Y 0.15 TCGA-E7-A7XN-01 5 179032922 179032922 G A RUFY1 Silent p.L634L 0.11 TCGA-E7-A7XN-01 5 179300157 179300157 C G TBC1D9B Missense_Mutation p.E760Q 0.17 tolerated(0.2) benign(0.031) TCGA-E7-A7XN-01 5 179306733 179306733 G A TBC1D9B Silent p.L437L 0.16 TCGA-E7-A7XN-01 5 180043904 180043904 C T FLT4 Missense_Mutation p.R1031Q 0.17 deleterious(0) probably_damaging(0.979) TCGA-E7-A7XN-01 5 21755734 21755734 C G CDH12 Missense_Mutation p.L617F 0.17 deleterious(0.02) probably_damaging(0.991) TCGA-E7-A7XN-01 5 32789507 32789507 C T NPR3 3'UTR 0.16 TCGA-E7-A7XN-01 5 36049520 36049520 C G UGT3A2 Missense_Mutation p.G105A 0.09 tolerated(0.72) benign(0.003) TCGA-E7-A7XN-01 5 41160370 41160370 G A C6 Missense_Mutation p.P520S 0.18 tolerated(0.26) probably_damaging(0.992) TCGA-E7-A7XN-01 5 41186270 41186270 C G C6 Missense_Mutation p.D210H 0.05 deleterious(0.01) possibly_damaging(0.907) TCGA-E7-A7XN-01 5 41382280 41382280 G A PLCXD3 Missense_Mutation p.H154Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 5 442943 442943 G A C5orf55 5'UTR 0.19 TCGA-E7-A7XN-01 5 442952 442952 G A C5orf55 5'UTR 0.20 TCGA-E7-A7XN-01 5 53409235 53409235 C T ARL15 Missense_Mutation p.D87N 0.18 deleterious(0.05) benign(0.078) TCGA-E7-A7XN-01 5 53839058 53839058 G C SNX18 Missense_Mutation p.K557N 0.11 deleterious(0) possibly_damaging(0.782) TCGA-E7-A7XN-01 5 60067790 60067790 C G ELOVL7 Missense_Mutation p.K65N 0.16 tolerated(0.09) possibly_damaging(0.805) TCGA-E7-A7XN-01 5 63256845 63256845 C G HTR1A Missense_Mutation p.E234D 0.08 tolerated(0.31) benign(0.015) TCGA-E7-A7XN-01 5 66456367 66456367 G A MAST4 Silent p.K1244K 0.16 TCGA-E7-A7XN-01 5 68578528 68578528 C G CCDC125 3'UTR 0.19 TCGA-E7-A7XN-01 5 74026190 74026190 C G GFM2 Missense_Mutation p.E541Q 0.15 deleterious(0.02) benign(0.056) TCGA-E7-A7XN-01 5 75914343 75914343 C T F2RL2 Silent p.T63T 0.17 TCGA-E7-A7XN-01 5 7866908 7866908 C G FASTKD3 Missense_Mutation p.R430T 0.16 deleterious(0.03) possibly_damaging(0.513) TCGA-E7-A7XN-01 5 7867071 7867071 C G FASTKD3 Missense_Mutation p.E376Q 0.22 tolerated(1) benign(0.036) TCGA-E7-A7XN-01 5 7867190 7867190 C G FASTKD3 Missense_Mutation p.R336T 0.18 tolerated(0.33) benign(0.007) TCGA-E7-A7XN-01 5 7867383 7867383 C T FASTKD3 Missense_Mutation p.E272K 0.16 tolerated(0.4) benign(0.002) TCGA-E7-A7XN-01 5 83402642 83402642 G C EDIL3 Nonsense_Mutation p.S159* 0.21 TCGA-E7-A7XN-01 5 89814705 89814705 G A LYSMD3 Silent p.F284F 0.14 TCGA-E7-A7XN-01 5 89985761 89985761 G A GPR98 Missense_Mutation p.D2192N 0.10 probably_damaging(0.945) TCGA-E7-A7XN-01 5 94994576 94994576 G C SPATA9 Missense_Mutation p.I172M 0.16 deleterious(0) possibly_damaging(0.837) TCGA-E7-A7XN-01 6 106967395 106967395 C G AIM1 Missense_Mutation p.S363C 0.17 deleterious_low_confidence(0.01) benign(0.294) TCGA-E7-A7XN-01 6 117232129 117232129 C G RFX6 Nonsense_Mutation p.S235* 0.15 TCGA-E7-A7XN-01 6 133100544 133100544 C G SLC18B1 Splice_Site p.X220_splice 0.14 TCGA-E7-A7XN-01 6 136599060 136599060 G C BCLAF1 Missense_Mutation p.S320W 0.05 deleterious(0.04) possibly_damaging(0.871) TCGA-E7-A7XN-01 6 139134448 139134448 C G ECT2L Missense_Mutation p.P13A 0.13 deleterious(0) probably_damaging(0.958) TCGA-E7-A7XN-01 6 146125779 146125779 C G FBXO30 Missense_Mutation p.G588A 0.15 tolerated(0.32) possibly_damaging(0.835) TCGA-E7-A7XN-01 6 150001312 150001312 C T LATS1 Nonsense_Mutation p.W764* 0.14 TCGA-E7-A7XN-01 6 150001317 150001317 C T LATS1 Missense_Mutation p.E763K 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-E7-A7XN-01 6 150005006 150005006 G A LATS1 Nonsense_Mutation p.Q407* 0.13 TCGA-E7-A7XN-01 6 150342222 150342222 G C RAET1L Silent p.L150L 0.15 TCGA-E7-A7XN-01 6 15468887 15468887 C T JARID2 Missense_Mutation p.S203L 0.27 deleterious(0) possibly_damaging(0.563) TCGA-E7-A7XN-01 6 155154575 155154575 C T SCAF8 3'UTR 0.13 TCGA-E7-A7XN-01 6 157744516 157744516 C A TMEM242 Missense_Mutation p.A6S 0.11 tolerated_low_confidence(0.44) benign(0.003) TCGA-E7-A7XN-01 6 158327215 158327215 G C SNX9 Missense_Mutation p.A226P 0.11 tolerated(0.11) benign(0.001) TCGA-E7-A7XN-01 6 160328242 160328242 C T MAS1 Silent p.F85F 0.15 TCGA-E7-A7XN-01 6 160467653 160467653 C G IGF2R Nonsense_Mutation p.S676* 0.17 TCGA-E7-A7XN-01 6 25777134 25777134 C T SLC17A4 Silent p.I405I 0.16 TCGA-E7-A7XN-01 6 26056660 26056660 G A HIST1H1C 5'UTR 0.19 TCGA-E7-A7XN-01 6 26124440 26124440 G C HIST1H2AC 5'UTR 0.14 TCGA-E7-A7XN-01 6 27100478 27100478 C T HIST1H2BJ Missense_Mutation p.A18T 0.14 deleterious_low_confidence(0.05) unknown(0) TCGA-E7-A7XN-01 6 27115308 27115308 G C HIST1H2AH 3'UTR 0.21 TCGA-E7-A7XN-01 6 29455149 29455149 G A MAS1L Silent p.F177F 0.14 TCGA-E7-A7XN-01 6 29977339 29977339 G A ZNRD1-AS1 Intron 0.11 TCGA-E7-A7XN-01 6 30080583 30080583 G C TRIM31 5'UTR 0.14 TCGA-E7-A7XN-01 6 30164394 30164394 C T TRIM26 Missense_Mutation p.E222K 0.11 tolerated(0.21) possibly_damaging(0.468) TCGA-E7-A7XN-01 6 30458171 30458171 C G HLA-E Missense_Mutation p.I163M 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-E7-A7XN-01 6 30657907 30657907 C T NRM Missense_Mutation p.E83K 0.11 tolerated(0.73) benign(0.42) TCGA-E7-A7XN-01 6 30899818 30899818 C T SFTA2 Missense_Mutation p.G19E 0.27 tolerated(0.14) unknown(0) TCGA-E7-A7XN-01 6 31323359 31323359 C T HLA-B Silent p.K210K 0.10 TCGA-E7-A7XN-01 6 31323370 31323370 C G HLA-B Splice_Site p.X207_splice 0.11 TCGA-E7-A7XN-01 6 31595668 31595668 G A PRRC2A Missense_Mutation p.E473K 0.17 unknown(0) TCGA-E7-A7XN-01 6 31735409 31735409 C G VWA7 Missense_Mutation p.K542N 0.03 tolerated(0.21) benign(0.148) TCGA-E7-A7XN-01 6 31765794 31765794 G C LSM2 Silent p.V45V 0.15 TCGA-E7-A7XN-01 6 31852767 31852767 G A EHMT2 Silent p.I790I 0.09 TCGA-E7-A7XN-01 6 31940164 31940164 C T STK19 Silent p.F102F 0.14 TCGA-E7-A7XN-01 6 32947861 32947861 G C BRD2 Missense_Mutation p.E735Q 0.12 deleterious(0.03) benign(0.403) TCGA-E7-A7XN-01 6 33169620 33169620 G C SLC39A7 Missense_Mutation p.Q170H 0.15 deleterious(0) probably_damaging(0.95) TCGA-E7-A7XN-01 6 33170401 33170401 G C SLC39A7 Missense_Mutation p.K288N 0.14 deleterious(0.05) benign(0.115) TCGA-E7-A7XN-01 6 33236338 33236338 C T VPS52 Missense_Mutation p.E213K 0.14 tolerated(0.13) benign(0.038) TCGA-E7-A7XN-01 6 33236339 33236339 C T VPS52 Silent p.Q212Q 0.15 TCGA-E7-A7XN-01 6 35965594 35965594 G A SLC26A8 Missense_Mutation p.S183L 0.19 deleterious(0) possibly_damaging(0.509) TCGA-E7-A7XN-01 6 36178226 36178226 C T BRPF3 Silent p.I700I 0.11 TCGA-E7-A7XN-01 6 37452917 37452917 C T CCDC167 Silent p.V32V 0.28 TCGA-E7-A7XN-01 6 39867939 39867939 C T DAAM2 Silent p.F922F 0.17 TCGA-E7-A7XN-01 6 43748497 43748497 C T VEGFA Nonsense_Mutation p.Q331* 0.16 TCGA-E7-A7XN-01 6 49586889 49586889 C G RHAG Intron 0.18 TCGA-E7-A7XN-01 6 53989646 53989646 C T MLIP Nonsense_Mutation p.Q199* 0.21 TCGA-E7-A7XN-01 6 57025901 57025901 C T ZNF451 Silent p.N1030N 0.10 TCGA-E7-A7XN-01 6 71238130 71238130 G C FAM135A Silent p.L1250L 0.07 TCGA-E7-A7XN-01 6 7248826 7248826 G A RREB1 Silent p.Q1618Q 0.14 TCGA-E7-A7XN-01 6 74079008 74079008 G A OOEP Silent p.F97F 0.19 TCGA-E7-A7XN-01 6 76024256 76024256 C G FILIP1 Missense_Mutation p.R431T 0.13 deleterious(0) possibly_damaging(0.907) TCGA-E7-A7XN-01 6 78172850 78172850 G C HTR1B Missense_Mutation p.L91V 0.15 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 6 80721692 80721692 G C TTK Missense_Mutation p.M297I 0.15 tolerated(0.3) benign(0) TCGA-E7-A7XN-01 6 90368487 90368487 C G MDN1 Missense_Mutation p.E4955Q 0.11 unknown(0) TCGA-E7-A7XN-01 6 90371850 90371850 C T MDN1 Missense_Mutation p.D4841N 0.09 possibly_damaging(0.649) TCGA-E7-A7XN-01 6 90432698 90432698 C T MDN1 Missense_Mutation p.M1981I 0.12 probably_damaging(0.942) TCGA-E7-A7XN-01 6 90432853 90432853 C T MDN1 Missense_Mutation p.E1930K 0.13 benign(0.055) TCGA-E7-A7XN-01 6 93969199 93969199 T A EPHA7 Splice_Site p.X600_splice 0.16 TCGA-E7-A7XN-01 6 97001173 97001173 C T UFL1 Missense_Mutation p.L727F 0.18 tolerated(0.07) benign(0.202) TCGA-E7-A7XN-01 6 99936646 99936646 C T USP45 Missense_Mutation p.E177K 0.11 tolerated(0.33) benign(0.02) TCGA-E7-A7XN-01 7 100033921 100033921 G T PPP1R35 Missense_Mutation p.P26Q 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-E7-A7XN-01 7 100319611 100319611 G C EPO Missense_Mutation p.L62F 0.17 tolerated(0.41) benign(0.053) TCGA-E7-A7XN-01 7 102016305 102016305 C G PRKRIP1 5'UTR 0.14 TCGA-E7-A7XN-01 7 105516981 105516981 G C ATXN7L1 Missense_Mutation p.I8M 0.11 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-E7-A7XN-01 7 106871097 106871097 C T COG5 Missense_Mutation p.D742N 0.12 deleterious(0.03) benign(0.105) TCGA-E7-A7XN-01 7 107115790 107115790 C T GPR22 Nonsense_Mutation p.Q429* 0.23 TCGA-E7-A7XN-01 7 107749663 107749663 C G LAMB4 Missense_Mutation p.D119H 0.06 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 7 112724459 112724459 G C GPR85 Missense_Mutation p.F106L 0.17 deleterious(0) benign(0.42) TCGA-E7-A7XN-01 7 114268607 114268607 G A FOXP2 Missense_Mutation p.V116M 0.14 tolerated(0.16) probably_damaging(0.961) TCGA-E7-A7XN-01 7 114329859 114329859 G A FOXP2 Missense_Mutation p.E701K 0.13 deleterious(0.02) benign(0.007) TCGA-E7-A7XN-01 7 117235110 117235110 G C CFTR Missense_Mutation p.E873Q 0.15 tolerated(0.21) benign(0.021) TCGA-E7-A7XN-01 7 117282514 117282514 G C CFTR Missense_Mutation p.G1247A 0.08 deleterious(0) benign(0.205) TCGA-E7-A7XN-01 7 121733143 121733143 A C AASS Silent p.T575T 0.16 TCGA-E7-A7XN-01 7 121943864 121943864 C G FEZF1 Missense_Mutation p.E210Q 0.16 deleterious(0.02) possibly_damaging(0.494) TCGA-E7-A7XN-01 7 124491967 124491967 G A POT1 Missense_Mutation p.S303L 0.16 tolerated(0.38) benign(0) TCGA-E7-A7XN-01 7 124532351 124532351 G C POT1 Missense_Mutation p.F31L 0.19 deleterious(0) probably_damaging(0.94) TCGA-E7-A7XN-01 7 128457906 128457906 C T CCDC136 Missense_Mutation p.S1153L 0.04 deleterious(0) benign(0.371) TCGA-E7-A7XN-01 7 134849592 134849592 C A TMEM140 Silent p.L133L 0.17 TCGA-E7-A7XN-01 7 138417679 138417679 G C ATP6V0A4 Missense_Mutation p.I617M 0.20 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 7 141629960 141629960 C G CLEC5A Missense_Mutation p.D171H 0.15 deleterious(0) probably_damaging(1) TCGA-E7-A7XN-01 7 142124314 142124314 C T TRBV6-8 Missense_Mutation p.R55Q 0.16 tolerated(0.09) possibly_damaging(0.463) TCGA-E7-A7XN-01 7 142131863 142131863 G A TRBV5-6 Silent p.L5L 0.11 TCGA-E7-A7XN-01 7 142562295 142562295 A T EPHB6 Missense_Mutation p.Q246L 0.16 tolerated(0.18) probably_damaging(0.978) TCGA-E7-A7XN-01 7 143098438 143098438 G C EPHA1 Silent p.L137L 0.21 TCGA-E7-A7XN-01 7 148483671 148483671 G A CUL1 Missense_Mutation p.E443K 0.22 deleterious(0) probably_damaging(0.982) TCGA-E7-A7XN-01 7 148863325 148863325 G C ZNF398 Missense_Mutation p.E166Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-E7-A7XN-01 7 149172354 149172354 C T ZNF746 Silent p.E353E 0.11 TCGA-E7-A7XN-01 7 149431123 149431123 G A KRBA1 Nonsense_Mutation p.W1026* 0.11 TCGA-E7-A7XN-01 7 149462730 149462730 C G ZNF467 Missense_Mutation p.L287F 0.23 deleterious(0.04) probably_damaging(1) TCGA-E7-A7XN-01 7 149489151 149489151 C G SSPO Intron 0.12 TCGA-E7-A7XN-01 7 149557965 149557965 G A ZNF862 Silent p.L572L 0.14 TCGA-E7-A7XN-01 7 150037212 150037212 C T RARRES2 Missense_Mutation p.E86K 0.14 tolerated(0.12) benign(0.1) TCGA-E7-A7XN-01 7 151841937 151841937 G C KMT2C Nonsense_Mutation p.S4735* 0.11 TCGA-E7-A7XN-01 7 154875957 154875957 G A HTR5A Silent p.Q278Q 0.16 TCGA-E7-A7XN-01 7 157361643 157361643 C G PTPRN2 Silent p.R951R 0.11 TCGA-E7-A7XN-01 7 158554234 158554234 G C ESYT2 Missense_Mutation p.L444V 0.16 tolerated(0.06) benign(0.086) TCGA-E7-A7XN-01 7 23235486 23235486 G C NUPL2 Missense_Mutation p.L158F 0.15 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 7 24703280 24703280 G C MPP6 Missense_Mutation p.L241F 0.24 deleterious(0) probably_damaging(0.996) TCGA-E7-A7XN-01 7 25200830 25200830 C T C7orf31 Missense_Mutation p.D121N 0.14 tolerated(0.1) benign(0.04) TCGA-E7-A7XN-01 7 26237295 26237295 C T HNRNPA2B1 Missense_Mutation p.E34K 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-E7-A7XN-01 7 27880454 27880454 C T JAZF1 Missense_Mutation p.E140K 0.17 tolerated(0.16) benign(0.011) TCGA-E7-A7XN-01 7 31008470 31008470 G C GHRHR Missense_Mutation p.E27Q 0.17 deleterious(0.04) possibly_damaging(0.873) TCGA-E7-A7XN-01 7 31682636 31682636 A T CCDC129 Missense_Mutation p.Y577F 0.14 tolerated(0.6) benign(0.192) TCGA-E7-A7XN-01 7 31735120 31735120 C G PPP1R17 Silent p.L40L 0.04 TCGA-E7-A7XN-01 7 43484922 43484922 G A HECW1 Silent p.T717T 0.24 TCGA-E7-A7XN-01 7 43684865 43684865 G A COA1 Silent p.D83D 0.24 TCGA-E7-A7XN-01 7 5569226 5569226 G T ACTB Missense_Mutation p.F21L 0.20 tolerated_low_confidence(0.06) probably_damaging(0.988) TCGA-E7-A7XN-01 7 66458288 66458288 C G SBDS Missense_Mutation p.K125N 0.15 tolerated(0.15) benign(0.281) TCGA-E7-A7XN-01 7 6731446 6731446 G C ZNF12 Nonsense_Mutation p.S376* 0.11 TCGA-E7-A7XN-01 7 71571256 71571256 G C CALN1 Missense_Mutation p.L90V 0.18 deleterious(0.02) probably_damaging(0.954) TCGA-E7-A7XN-01 7 72400549 72400549 C T POM121 Missense_Mutation p.S127F 0.19 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 7 72658353 72658353 C G GTF2IRD2P1 RNA 0.14 TCGA-E7-A7XN-01 7 72755313 72755313 T A FKBP6 Missense_Mutation p.F275L 0.21 deleterious(0.01) benign(0.297) TCGA-E7-A7XN-01 7 73117977 73117977 C A STX1A Intron 0.16 TCGA-E7-A7XN-01 7 75048695 75048695 G T POM121C Missense_Mutation p.T925N 0.10 deleterious(0.02) benign(0.039) TCGA-E7-A7XN-01 7 75959272 75959272 G C YWHAG Missense_Mutation p.F122L 0.16 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-E7-A7XN-01 7 86998691 86998691 G C CROT Splice_Site p.X211_splice 0.15 TCGA-E7-A7XN-01 7 89897610 89897610 G A C7orf63 Missense_Mutation p.M148I 0.22 deleterious(0.03) benign(0.023) TCGA-E7-A7XN-01 7 91875738 91875738 G A ANKIB1 5'UTR 0.27 TCGA-E7-A7XN-01 7 98509802 98509802 C A TRRAP Missense_Mutation p.S722Y 0.20 probably_damaging(0.984) TCGA-E7-A7XN-01 7 98563392 98563392 G A TRRAP Silent p.R2343R 0.14 TCGA-E7-A7XN-01 7 99247765 99247765 G C CYP3A5 Silent p.L448L 0.15 TCGA-E7-A7XN-01 7 99564518 99564518 C G AZGP1 3'UTR 0.11 TCGA-E7-A7XN-01 8 100821673 100821673 G C VPS13B Missense_Mutation p.G2696A 0.15 tolerated(0.06) probably_damaging(0.939) TCGA-E7-A7XN-01 8 101270861 101270861 C T RNF19A Missense_Mutation p.D814N 0.19 tolerated_low_confidence(0.08) benign(0.026) TCGA-E7-A7XN-01 8 103372333 103372333 C G UBR5 Missense_Mutation p.E118Q 0.08 tolerated(0.29) benign(0.012) TCGA-E7-A7XN-01 8 105509479 105509479 T C LRP12 Missense_Mutation p.N434S 0.15 deleterious(0) probably_damaging(0.993) TCGA-E7-A7XN-01 8 107781826 107781826 C A ABRA Missense_Mutation p.G198V 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-E7-A7XN-01 8 110489479 110489479 G A PKHD1L1 Silent p.Q2981Q 0.11 TCGA-E7-A7XN-01 8 110587478 110587478 G A SYBU Missense_Mutation p.S550L 0.16 deleterious(0.03) possibly_damaging(0.757) TCGA-E7-A7XN-01 8 110655035 110655035 C T SYBU Missense_Mutation p.E51K 0.15 deleterious(0) probably_damaging(0.997) TCGA-E7-A7XN-01 8 113504727 113504727 T A CSMD3 Missense_Mutation p.S1757C 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-E7-A7XN-01 8 118184901 118184901 G T SLC30A8 Missense_Mutation p.C364F 0.10 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 8 120582984 120582984 G C ENPP2 Missense_Mutation p.F678L 0.21 tolerated(0.96) benign(0) TCGA-E7-A7XN-01 8 121209047 121209047 C G COL14A1 Missense_Mutation p.Q152E 0.19 tolerated(0.08) benign(0) TCGA-E7-A7XN-01 8 124701168 124701168 C G ANXA13 Missense_Mutation p.E262Q 0.17 deleterious(0.01) probably_damaging(0.937) TCGA-E7-A7XN-01 8 125103704 125103704 G A FER1L6 Missense_Mutation p.E1478K 0.15 deleterious(0.01) possibly_damaging(0.797) TCGA-E7-A7XN-01 8 126021218 126021218 C G SQLE Silent p.L276L 0.11 TCGA-E7-A7XN-01 8 126021528 126021528 G C SQLE Missense_Mutation p.E351Q 0.23 tolerated(0.06) benign(0.035) TCGA-E7-A7XN-01 8 127569508 127569508 C G FAM84B Missense_Mutation p.E43Q 0.29 deleterious(0.01) benign(0.196) TCGA-E7-A7XN-01 8 136619236 136619236 G C KHDRBS3 Missense_Mutation p.Q282H 0.22 tolerated(0.11) possibly_damaging(0.667) TCGA-E7-A7XN-01 8 139732984 139732984 G C COL22A1 Missense_Mutation p.R785G 0.10 probably_damaging(0.992) TCGA-E7-A7XN-01 8 141461476 141461476 G C TRAPPC9 Missense_Mutation p.F97L 0.10 tolerated(0.46) benign(0.294) TCGA-E7-A7XN-01 8 143746147 143746147 C T JRK RNA 0.24 TCGA-E7-A7XN-01 8 144378883 144378883 G A ZNF696 Silent p.E346E 0.25 TCGA-E7-A7XN-01 8 144900174 144900174 G C PUF60 Missense_Mutation p.F225L 0.17 tolerated(0.08) benign(0.005) TCGA-E7-A7XN-01 8 144990875 144990875 G - PLEC Frame_Shift_Del p.Q4509Rfs*3 0.11 TCGA-E7-A7XN-01 8 144994603 144994603 T C PLEC Missense_Mutation p.Q3266R 0.16 benign(0.119) TCGA-E7-A7XN-01 8 145112921 145112921 G A OPLAH Silent p.L360L 0.12 TCGA-E7-A7XN-01 8 145738304 145738304 C G RECQL4 Missense_Mutation p.R894T 0.25 tolerated(0.46) benign(0.012) TCGA-E7-A7XN-01 8 17419460 17419460 C T SLC7A2 Silent p.L544L 0.21 TCGA-E7-A7XN-01 8 17944414 17944414 C T ASAH1 5'Flank 0.13 TCGA-E7-A7XN-01 8 21958965 21958965 T C FAM160B2 Missense_Mutation p.V544A 0.27 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 8 22548691 22548691 G C EGR3 Silent p.L153L 0.20 TCGA-E7-A7XN-01 8 23049351 23049351 C T TNFRSF10A Silent p.R421R 0.16 TCGA-E7-A7XN-01 8 23225676 23225676 C G LOXL2 Missense_Mutation p.Q63H 0.15 tolerated(0.53) possibly_damaging(0.863) TCGA-E7-A7XN-01 8 25343320 25343320 C A CDCA2 Missense_Mutation p.P471T 0.17 tolerated(0.28) benign(0.112) TCGA-E7-A7XN-01 8 26265788 26265788 G A BNIP3L Missense_Mutation p.M169I 0.13 tolerated(0.27) benign(0.381) TCGA-E7-A7XN-01 8 30210367 30210367 C G TUBBP1 RNA 0.13 TCGA-E7-A7XN-01 8 30701223 30701223 C G TEX15 Missense_Mutation p.E1771Q 0.19 tolerated(0.06) benign(0.032) TCGA-E7-A7XN-01 8 3226890 3226890 G C CSMD1 Missense_Mutation p.L929V 0.21 probably_damaging(0.999) TCGA-E7-A7XN-01 8 38172276 38172276 C A WHSC1L1 Missense_Mutation p.G711C 0.07 deleterious(0) probably_damaging(0.968) TCGA-E7-A7XN-01 8 41906295 41906296 TC A KAT6A Frame_Shift_Del p.G67Vfs*14 0.11 TCGA-E7-A7XN-01 8 42329899 42329899 C G SLC20A2 Missense_Mutation p.D4H 0.09 deleterious(0.02) benign(0.004) TCGA-E7-A7XN-01 8 55542217 55542217 C T RP1 Silent p.I1925I 0.04 TCGA-E7-A7XN-01 8 6377388 6377388 G C ANGPT2 Missense_Mutation p.I309M 0.13 tolerated(0.24) benign(0.124) TCGA-E7-A7XN-01 8 67478985 67478985 G C MYBL1 Silent p.V628V 0.12 TCGA-E7-A7XN-01 8 67955458 67955458 C G COPS5 3'UTR 0.16 TCGA-E7-A7XN-01 8 75274136 75274136 G A GDAP1 Missense_Mutation p.E168K 0.15 tolerated(0.37) benign(0.192) TCGA-E7-A7XN-01 8 85799997 85799997 G C RALYL Missense_Mutation p.G295R 0.09 tolerated(0.44) probably_damaging(0.933) TCGA-E7-A7XN-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.21 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 8 93074908 93074908 C T RUNX1T1 Intron 0.15 TCGA-E7-A7XN-01 8 95531373 95531373 C A KIAA1429 Nonsense_Mutation p.E785* 0.16 TCGA-E7-A7XN-01 8 95902767 95902767 G C CCNE2 Nonsense_Mutation p.S110* 0.19 TCGA-E7-A7XN-01 9 100076963 100076963 G A CCDC180 Missense_Mutation p.E262K 0.12 tolerated(0.11) benign(0.193) TCGA-E7-A7XN-01 9 100222556 100222556 C T TDRD7 Silent p.L318L 0.15 TCGA-E7-A7XN-01 9 100843392 100843392 C G NANS Intron 0.11 TCGA-E7-A7XN-01 9 100899883 100899883 C G CORO2A Missense_Mutation p.E97Q 0.14 deleterious(0.02) benign(0.035) TCGA-E7-A7XN-01 9 107553262 107553262 G C ABCA1 Missense_Mutation p.F1956L 0.16 deleterious(0.02) possibly_damaging(0.558) TCGA-E7-A7XN-01 9 109689086 109689086 G C ZNF462 Missense_Mutation p.E965Q 0.12 possibly_damaging(0.526) TCGA-E7-A7XN-01 9 113234567 113234567 T C SVEP1 Missense_Mutation p.Y879C 0.14 probably_damaging(0.984) TCGA-E7-A7XN-01 9 115030431 115030431 C T PTBP3 Silent p.V117V 0.20 TCGA-E7-A7XN-01 9 116136181 116136181 C T HDHD3 Missense_Mutation p.E152K 0.20 tolerated(0.28) benign(0.004) TCGA-E7-A7XN-01 9 117092756 117092756 G A ORM2 Missense_Mutation p.E53K 0.14 deleterious(0.01) benign(0.127) TCGA-E7-A7XN-01 9 118949460 118949460 C T PAPPA Missense_Mutation p.S148L 0.12 tolerated(0.56) possibly_damaging(0.637) TCGA-E7-A7XN-01 9 123933782 123933782 G A CNTRL Missense_Mutation p.E2125K 0.12 probably_damaging(0.96) TCGA-E7-A7XN-01 9 125652518 125652518 C T RC3H2 Intron 0.17 TCGA-E7-A7XN-01 9 130241761 130241761 G A LRSAM1 Missense_Mutation p.E294K 0.16 tolerated(0.22) possibly_damaging(0.871) TCGA-E7-A7XN-01 9 130674733 130674733 T G ST6GALNAC4 Missense_Mutation p.K142T 0.17 benign(0.088) TCGA-E7-A7XN-01 9 130829073 130829073 C T NAIF1 Missense_Mutation p.G103E 0.22 tolerated_low_confidence(0.06) benign(0.177) TCGA-E7-A7XN-01 9 130829083 130829083 C T NAIF1 Missense_Mutation p.E100K 0.23 tolerated_low_confidence(0.59) benign(0.054) TCGA-E7-A7XN-01 9 131395906 131395906 C T SPTAN1 3'UTR 0.14 TCGA-E7-A7XN-01 9 134463382 134463382 C G RAPGEF1 Missense_Mutation p.E861Q 0.14 tolerated(0.22) possibly_damaging(0.623) TCGA-E7-A7XN-01 9 135266219 135266219 C T TTF1 Splice_Site p.X663_splice 0.12 TCGA-E7-A7XN-01 9 135458245 135458245 G A BARHL1 Missense_Mutation p.A21T 0.23 tolerated_low_confidence(0.12) benign(0.019) TCGA-E7-A7XN-01 9 136214954 136214954 C G MED22 5'Flank 0.14 TCGA-E7-A7XN-01 9 136323136 136323136 C T ADAMTS13 Missense_Mutation p.P1333S 0.11 deleterious(0.02) benign(0.228) TCGA-E7-A7XN-01 9 138556079 138556079 G A LCN9 Silent p.L56L 0.15 TCGA-E7-A7XN-01 9 138703110 138703110 C G CAMSAP1 3'UTR 0.29 TCGA-E7-A7XN-01 9 140087040 140087040 T A TPRN Missense_Mutation p.E610V 0.10 deleterious(0.02) benign(0.371) TCGA-E7-A7XN-01 9 140151363 140151363 G C NELFB Missense_Mutation p.D152H 0.09 deleterious(0.05) probably_damaging(0.945) TCGA-E7-A7XN-01 9 140878631 140878631 C G CACNA1B Missense_Mutation p.I566M 0.38 deleterious(0.04) benign(0.118) TCGA-E7-A7XN-01 9 16870721 16870721 C G BNC2 5'Flank 0.11 TCGA-E7-A7XN-01 9 21333682 21333682 G A KLHL9 Missense_Mutation p.H393Y 0.14 deleterious(0) probably_damaging(0.94) TCGA-E7-A7XN-01 9 21971124 21971125 GA - CDKN2A Frame_Shift_Del p.L78Hfs*41 0.31 TCGA-E7-A7XN-01 9 22451849 22451849 C A DMRTA1 Missense_Mutation p.S485Y 0.14 deleterious(0.02) benign(0.091) TCGA-E7-A7XN-01 9 27197399 27197399 G A TEK Missense_Mutation p.E571K 0.17 tolerated(0.83) benign(0.007) TCGA-E7-A7XN-01 9 27949815 27949815 G C LINGO2 Missense_Mutation p.I285M 0.19 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 9 33270688 33270688 C T CHMP5 Nonsense_Mutation p.Q97* 0.12 TCGA-E7-A7XN-01 9 35555644 35555644 G C RUSC2 Missense_Mutation p.E868Q 0.13 tolerated(0.37) probably_damaging(0.993) TCGA-E7-A7XN-01 9 35703793 35703793 C T TLN1 Nonsense_Mutation p.W2112* 0.24 TCGA-E7-A7XN-01 9 35808116 35808116 C G SPAG8 3'UTR 0.10 TCGA-E7-A7XN-01 9 35813039 35813039 C G HINT2 3'UTR 0.18 TCGA-E7-A7XN-01 9 35846974 35846974 C T TMEM8B Silent p.F267F 0.07 TCGA-E7-A7XN-01 9 40705383 40705383 G C SPATA31A3 Missense_Mutation p.E1014Q 0.17 tolerated(0.07) probably_damaging(0.969) TCGA-E7-A7XN-01 9 452115 452115 G A DOCK8 Missense_Mutation p.M2022I 0.09 tolerated(0.05) benign(0.089) TCGA-E7-A7XN-01 9 5300025 5300025 G C RLN2 3'UTR 0.11 TCGA-E7-A7XN-01 9 5534847 5534847 G T PDCD1LG2 Missense_Mutation p.G53V 0.18 deleterious(0.05) possibly_damaging(0.548) TCGA-E7-A7XN-01 9 70177733 70177733 G A FOXD4L5 Missense_Mutation p.S84L 0.08 tolerated(0.1) possibly_damaging(0.879) TCGA-E7-A7XN-01 9 71080073 71080073 C T PGM5 Silent p.L370L 0.21 TCGA-E7-A7XN-01 9 73164576 73164576 C T TRPM3 Missense_Mutation p.D1185N 0.22 tolerated(0.09) benign(0.155) TCGA-E7-A7XN-01 9 74764422 74764422 C G GDA 5'UTR 0.18 TCGA-E7-A7XN-01 9 80855244 80855244 C G CEP78 Missense_Mutation p.L155V 0.13 deleterious(0.02) probably_damaging(0.99) TCGA-E7-A7XN-01 9 8484335 8484335 C A PTPRD Missense_Mutation p.R1066L 0.09 deleterious(0.02) possibly_damaging(0.491) TCGA-E7-A7XN-01 9 8501008 8501008 C G PTPRD Missense_Mutation p.S625T 0.16 tolerated(0.41) unknown(0) TCGA-E7-A7XN-01 9 85624578 85624578 C T RASEF Missense_Mutation p.D313N 0.17 tolerated(0.09) benign(0.034) TCGA-E7-A7XN-01 9 87563520 87563520 G A NTRK2 Missense_Mutation p.M636I 0.14 deleterious(0) possibly_damaging(0.596) TCGA-E7-A7XN-01 9 88961239 88961239 C G ZCCHC6 Missense_Mutation p.R226T 0.17 deleterious(0) probably_damaging(0.938) TCGA-E7-A7XN-01 9 90265013 90265013 G C DAPK1 Missense_Mutation p.D536H 0.11 tolerated(0.12) possibly_damaging(0.865) TCGA-E7-A7XN-01 9 93657847 93657847 C T SYK Missense_Mutation p.R625W 0.12 deleterious(0.01) probably_damaging(1) TCGA-E7-A7XN-01 9 99580252 99580252 G C ZNF782 Missense_Mutation p.Q685E 0.11 tolerated(0.1) benign(0.064) TCGA-E7-A7XN-01 9 99580592 99580592 G C ZNF782 Missense_Mutation p.F571L 0.15 deleterious(0) probably_damaging(0.999) TCGA-E7-A7XN-01 X 102755348 102755348 C G RAB40A Missense_Mutation p.E113Q 0.18 deleterious(0.04) benign(0.099) TCGA-E7-A7XN-01 X 103411590 103411590 G C FAM199X Missense_Mutation p.D42H 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-E7-A7XN-01 X 131261886 131261886 G C FRMD7 5'UTR 0.26 TCGA-E7-A7XN-01 X 135431321 135431321 C G GPR112 Nonsense_Mutation p.S1819* 0.36 TCGA-E7-A7XN-01 X 13790949 13790949 G A GPM6B 3'UTR 0.52 TCGA-E7-A7XN-01 X 13791015 13791015 G C GPM6B Silent p.L324L 0.35 TCGA-E7-A7XN-01 X 13792538 13792538 G C GPM6B Intron 0.36 TCGA-E7-A7XN-01 X 14038306 14038306 C G GEMIN8 Missense_Mutation p.E121D 0.29 tolerated(0.23) benign(0.126) TCGA-E7-A7XN-01 X 142716593 142716593 C G SLITRK4 Missense_Mutation p.E778Q 0.29 tolerated(0.11) probably_damaging(0.979) TCGA-E7-A7XN-01 X 149783103 149783103 G A MTM1 Silent p.S91S 0.21 TCGA-E7-A7XN-01 X 150912862 150912862 C G CNGA2 Silent p.L629L 0.32 TCGA-E7-A7XN-01 X 152772350 152772350 G C BGN Missense_Mutation p.E247Q 0.40 tolerated(0.17) benign(0.032) TCGA-E7-A7XN-01 X 153050895 153050895 C G SRPK3 Missense_Mutation p.L542V 0.16 deleterious(0.01) possibly_damaging(0.466) TCGA-E7-A7XN-01 X 153130411 153130411 G A L1CAM Missense_Mutation p.R971W 0.35 deleterious(0.02) possibly_damaging(0.601) TCGA-E7-A7XN-01 X 19701995 19701995 G C SH3KBP1 Missense_Mutation p.I224M 0.06 deleterious(0) benign(0.082) TCGA-E7-A7XN-01 X 215978 215978 C G PLCXD1 Silent p.L316L 0.14 TCGA-E7-A7XN-01 X 2408602 2408602 C G ZBED1 Missense_Mutation p.Q53H 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-E7-A7XN-01 X 24833165 24833165 G A POLA1 Silent p.L1116L 0.37 TCGA-E7-A7XN-01 X 36091420 36091420 T G CHDC2 Missense_Mutation p.F119V 0.28 deleterious(0) probably_damaging(0.998) TCGA-E7-A7XN-01 X 41414878 41414878 G A CASK Missense_Mutation p.S606L 0.21 tolerated_low_confidence(0.67) benign(0.005) TCGA-E7-A7XN-01 X 44918514 44918514 C T KDM6A Nonsense_Mutation p.Q333* 0.21 TCGA-E7-A7XN-01 X 48542302 48542302 G C WAS Missense_Mutation p.Q20H 0.34 deleterious(0.04) benign(0.035) TCGA-E7-A7XN-01 X 51150956 51150956 C A CXorf67 Missense_Mutation p.S363Y 0.35 tolerated(0.46) possibly_damaging(0.452) TCGA-E7-A7XN-01 X 65474894 65474894 C T HEPH Nonsense_Mutation p.Q915* 0.24 TCGA-E7-A7XN-01 X 71839103 71839103 G A PHKA1 Silent p.F730F 0.35 TCGA-E7-A7XN-01 X 76709728 76709728 G T FGF16 Nonsense_Mutation p.E28* 0.42 TCGA-E7-A7XN-01 X 76931749 76931749 C T ATRX Missense_Mutation p.D1261N 0.20 probably_damaging(0.926) TCGA-E7-A7XN-01 X 76939606 76939606 G A ATRX Missense_Mutation p.S381L 0.32 benign(0.002) TCGA-E7-A7XN-01 X 90690802 90690802 T C PABPC5 Silent p.L76L 0.33 TCGA-E7-A7XN-01 Y 15582006 15582006 G C UTY Nonsense_Mutation p.S107* 0.19 TCGA-E7-A7XN-01 Y 4967173 4967173 G A PCDH11Y Missense_Mutation p.M518I 0.26 tolerated(0.71) benign(0) TCGA-E7-A85H-01 10 101295003 101295003 G C NKX2-3 Missense_Mutation p.R207P 0.27 deleterious(0) probably_damaging(0.971) TCGA-E7-A85H-01 10 104634401 104634401 G A AS3MT Missense_Mutation p.A171T 0.50 deleterious(0.04) benign(0.261) TCGA-E7-A85H-01 10 104636743 104636743 T C AS3MT Silent p.Y187Y 0.62 TCGA-E7-A85H-01 10 105965786 105965786 T C WDR96 Missense_Mutation p.R300G 0.61 tolerated(0.55) benign(0.001) TCGA-E7-A85H-01 10 108923844 108923844 C G SORCS1 Silent p.P147P 0.34 TCGA-E7-A85H-01 10 115480794 115480794 G A CASP7 Silent p.K71K 0.49 TCGA-E7-A85H-01 10 115480800 115480800 G C CASP7 Missense_Mutation p.K73N 0.47 deleterious(0.05) benign(0.043) TCGA-E7-A85H-01 10 116621286 116621286 C G FAM160B1 Missense_Mutation p.S762C 0.24 deleterious(0) possibly_damaging(0.789) TCGA-E7-A85H-01 10 121567513 121567513 A G INPP5F Missense_Mutation p.M504V 0.52 tolerated(0.06) benign(0.17) TCGA-E7-A85H-01 10 128193397 128193398 - GGC C10orf90 In_Frame_Ins p.P124dup 0.25 TCGA-E7-A85H-01 10 27702200 27702200 T C PTCHD3 Missense_Mutation p.Y327C 0.32 deleterious(0) probably_damaging(0.967) TCGA-E7-A85H-01 10 29812501 29812501 T C SVIL Silent p.E1014E 0.16 TCGA-E7-A85H-01 10 31608154 31608154 C T ZEB1 5'UTR 0.36 TCGA-E7-A85H-01 10 32557977 32557977 C G EPC1 3'UTR 0.68 TCGA-E7-A85H-01 10 43088841 43088841 A G ZNF33B Silent p.H519H 0.78 TCGA-E7-A85H-01 10 50530704 50530704 G A C10orf71 Silent p.R38R 0.38 TCGA-E7-A85H-01 10 5804606 5804606 A G FAM208B Missense_Mutation p.Y2429C 0.43 tolerated(0.07) probably_damaging(0.999) TCGA-E7-A85H-01 10 5979159 5979159 C T FBXO18 Silent p.S1067S 0.40 TCGA-E7-A85H-01 10 73439199 73439199 C A CDH23 Missense_Mutation p.A195E 0.67 deleterious(0) possibly_damaging(0.782) TCGA-E7-A85H-01 10 75541837 75541837 G A CHCHD1 Missense_Mutation p.A2T 0.47 tolerated(0.16) possibly_damaging(0.666) TCGA-E7-A85H-01 10 85904642 85904642 A G GHITM Missense_Mutation p.Q118R 0.22 deleterious(0.01) benign(0.374) TCGA-E7-A85H-01 10 85992584 85992584 C T LRIT1 Missense_Mutation p.G324E 0.53 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 10 89311874 89311874 T G MINPP1 Missense_Mutation p.F368C 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-E7-A85H-01 10 90682973 90682973 C A STAMBPL1 Missense_Mutation p.L435M 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-E7-A85H-01 10 91099411 91099411 C G IFIT3 Silent p.S333S 0.20 TCGA-E7-A85H-01 10 95278646 95278646 T C CEP55 Missense_Mutation p.Y336H 0.62 tolerated(0.3) possibly_damaging(0.896) TCGA-E7-A85H-01 11 100126564 100126564 C A CNTN5 Missense_Mutation p.P693Q 0.41 deleterious(0.02) probably_damaging(0.928) TCGA-E7-A85H-01 11 102319577 102319577 A G TMEM123 Silent p.S41S 0.39 TCGA-E7-A85H-01 11 102573753 102573753 G - MMP27 Frame_Shift_Del p.F146Lfs*12 0.26 TCGA-E7-A85H-01 11 106810364 106810364 C A GUCY1A2 Missense_Mutation p.G343V 0.36 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 11 107799330 107799330 C G RAB39A Missense_Mutation p.I12M 0.31 deleterious(0) probably_damaging(0.997) TCGA-E7-A85H-01 11 108186754 108186754 C A ATM Missense_Mutation p.H2038N 0.83 deleterious(0) possibly_damaging(0.656) TCGA-E7-A85H-01 11 111154908 111154908 G A C11orf53 Missense_Mutation p.G39R 0.70 deleterious(0.01) benign(0.15) TCGA-E7-A85H-01 11 111789690 111789690 G C C11orf52 5'UTR 0.83 TCGA-E7-A85H-01 11 112064677 112064677 T C BCO2 Missense_Mutation p.M198T 0.84 deleterious(0) probably_damaging(0.95) TCGA-E7-A85H-01 11 113618421 113618421 A G ZW10 Silent p.T368T 0.39 TCGA-E7-A85H-01 11 11373838 11373838 A T CSNK2A3 Missense_Mutation p.S277T 0.34 tolerated(0.19) possibly_damaging(0.891) TCGA-E7-A85H-01 11 120856901 120856901 C T GRIK4 Missense_Mutation p.P935S 0.70 tolerated_low_confidence(0.39) benign(0.001) TCGA-E7-A85H-01 11 1270324 1270324 A G MUC5B Missense_Mutation p.S4072G 0.63 unknown(0) TCGA-E7-A85H-01 11 46810288 46810288 G A CKAP5 Silent p.C637C 0.74 TCGA-E7-A85H-01 11 47256391 47256391 C G DDB2 Silent p.S262S 0.34 TCGA-E7-A85H-01 11 57798886 57798886 G A OR6Q1 Silent p.L154L 0.15 TCGA-E7-A85H-01 11 5862665 5862665 A G OR52E6 Silent p.L155L 0.07 TCGA-E7-A85H-01 11 61106844 61106844 C T DAK Silent p.S141S 0.66 TCGA-E7-A85H-01 11 61563165 61563165 T C FEN1 Missense_Mutation p.L111P 0.14 deleterious(0.02) possibly_damaging(0.828) TCGA-E7-A85H-01 11 61897938 61897938 G A INCENP Silent p.P313P 0.05 TCGA-E7-A85H-01 11 6231218 6231218 C T C11orf42 Missense_Mutation p.R71W 0.82 deleterious(0) probably_damaging(0.961) TCGA-E7-A85H-01 11 62476267 62476267 G A GNG3 Missense_Mutation p.A73T 0.60 tolerated(0.48) benign(0.023) TCGA-E7-A85H-01 11 62557484 62557484 G A TMEM179B Missense_Mutation p.D209N 0.12 deleterious(0) benign(0.007) TCGA-E7-A85H-01 11 63988079 63988079 G A FERMT3 Missense_Mutation p.E499K 0.19 tolerated(0.62) benign(0.422) TCGA-E7-A85H-01 11 64564142 64564142 G A MAP4K2 Silent p.L512L 0.49 TCGA-E7-A85H-01 11 64662409 64662409 G A ATG2A 3'UTR 0.37 TCGA-E7-A85H-01 11 6541350 6541350 G C DNHD1 Intron 0.36 TCGA-E7-A85H-01 11 65820496 65820496 A G SF3B2 Splice_Site p.X61_splice 0.47 TCGA-E7-A85H-01 11 66192522 66192522 G T NPAS4 Missense_Mutation p.D721Y 0.18 tolerated(0.06) benign(0.113) TCGA-E7-A85H-01 11 67077389 67077389 C A SSH3 Missense_Mutation p.N453K 0.68 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 11 73849846 73849846 G A C2CD3 Nonsense_Mutation p.Q292* 0.59 TCGA-E7-A85H-01 11 74546755 74546755 T C RNF169 Silent p.P369P 0.08 TCGA-E7-A85H-01 11 75852349 75852349 G C UVRAG Missense_Mutation p.E664D 0.79 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-E7-A85H-01 11 76901828 76901828 G T MYO7A Silent p.T1279T 0.45 TCGA-E7-A85H-01 11 82872452 82872452 T G PCF11 Missense_Mutation p.F92L 0.35 deleterious(0) probably_damaging(0.944) TCGA-E7-A85H-01 11 86098632 86098632 C T CCDC81 Silent p.I72I 0.38 TCGA-E7-A85H-01 11 95516321 95516321 A T FAM76B Silent p.S157S 0.41 TCGA-E7-A85H-01 12 101018622 101018622 A G GAS2L3 Missense_Mutation p.D680G 0.18 tolerated(0.08) benign(0.04) TCGA-E7-A85H-01 12 102122658 102122658 T C SYCP3 3'UTR 0.21 TCGA-E7-A85H-01 12 102869534 102869534 G A IGF1 Missense_Mutation p.A36V 0.59 tolerated(0.32) benign(0.008) TCGA-E7-A85H-01 12 10324731 10324732 - AA OLR1 5'UTR 0.26 TCGA-E7-A85H-01 12 109577567 109577567 G T ACACB Silent p.G119G 0.50 TCGA-E7-A85H-01 12 113448116 113448116 C G OAS2 Intron 0.32 TCGA-E7-A85H-01 12 116435017 116435017 C T MED13L Missense_Mutation p.R863K 0.24 tolerated(0.51) unknown(0) TCGA-E7-A85H-01 12 122018113 122018113 G A KDM2B Intron 0.41 TCGA-E7-A85H-01 12 133209345 133209345 C G POLE Missense_Mutation p.G2014A 0.08 tolerated(0.33) benign(0.001) TCGA-E7-A85H-01 12 14924059 14924059 C T HIST4H4 5'UTR 0.26 TCGA-E7-A85H-01 12 21716181 21716181 C A GYS2 Missense_Mutation p.V308F 0.66 deleterious(0) possibly_damaging(0.879) TCGA-E7-A85H-01 12 22215238 22215238 C T CMAS Silent p.A328A 0.34 TCGA-E7-A85H-01 12 34175657 34175657 C G ALG10 Missense_Mutation p.H41Q 0.40 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 12 43860539 43860539 T C ADAMTS20 Missense_Mutation p.H428R 0.15 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 12 46765115 46765137 TGGGCTCCTTTTGTCCTTGGCGG - SLC38A2 5'UTR 0.44 TCGA-E7-A85H-01 12 49169754 49169754 G A ADCY6 Missense_Mutation p.R600C 0.13 deleterious(0) probably_damaging(0.959) TCGA-E7-A85H-01 12 50037841 50037841 C A FMNL3 3'UTR 0.46 TCGA-E7-A85H-01 12 50191117 50191117 C A NCKAP5L Missense_Mutation p.A176S 0.59 tolerated(1) benign(0.026) TCGA-E7-A85H-01 12 50191118 50191118 T A NCKAP5L Silent p.P175P 0.61 TCGA-E7-A85H-01 12 53184086 53184086 C G KRT3 Missense_Mutation p.G543R 0.33 tolerated(0.13) unknown(0) TCGA-E7-A85H-01 12 53452110 53452110 A G TENC1 Missense_Mutation p.Y379C 0.44 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 12 53586686 53586686 G T ITGB7 Missense_Mutation p.R579S 0.53 tolerated(0.26) benign(0.085) TCGA-E7-A85H-01 12 53776268 53776268 C A SP1 Missense_Mutation p.F179L 0.31 tolerated(0.21) possibly_damaging(0.483) TCGA-E7-A85H-01 12 56295691 56295691 C G WIBG Missense_Mutation p.E194Q 0.14 tolerated(0.67) unknown(0) TCGA-E7-A85H-01 12 56826168 56826168 A G TIMELESS Silent p.L224L 0.36 TCGA-E7-A85H-01 12 57589711 57589711 T C LRP1 Missense_Mutation p.W2876R 0.38 probably_damaging(0.975) TCGA-E7-A85H-01 12 57960978 57960978 C T KIF5A Missense_Mutation p.R191C 0.16 deleterious(0) probably_damaging(0.961) TCGA-E7-A85H-01 12 6344731 6344731 G A CD9 Silent p.K179K 0.79 TCGA-E7-A85H-01 12 7864223 7864223 C T DPPA3 Silent p.T19T 0.71 TCGA-E7-A85H-01 12 8050941 8050941 G C NANOGP1 RNA 0.37 TCGA-E7-A85H-01 12 81536974 81536974 C T ACSS3 Missense_Mutation p.S290L 0.36 deleterious(0) probably_damaging(0.926) TCGA-E7-A85H-01 12 88383143 88383143 C T C12orf50 Missense_Mutation p.D200N 0.19 tolerated(0.09) possibly_damaging(0.9) TCGA-E7-A85H-01 12 9334658 9334658 T C PZP Silent p.A534A 0.40 TCGA-E7-A85H-01 13 100153956 100153956 G A TM9SF2 Silent p.R32R 0.73 TCGA-E7-A85H-01 13 29598891 29598891 G A MTUS2 Missense_Mutation p.R29K 0.28 tolerated(0.06) benign(0.039) TCGA-E7-A85H-01 13 29599131 29599131 G C MTUS2 Missense_Mutation p.R109T 0.31 deleterious(0.04) benign(0.005) TCGA-E7-A85H-01 13 29599201 29599201 G A MTUS2 Silent p.Q132Q 0.28 TCGA-E7-A85H-01 13 29599285 29599285 G T MTUS2 Missense_Mutation p.R160S 0.26 tolerated(0.38) benign(0.066) TCGA-E7-A85H-01 13 29599609 29599609 G C MTUS2 Missense_Mutation p.E268D 0.23 tolerated(0.13) benign(0.024) TCGA-E7-A85H-01 13 29599997 29599997 G A MTUS2 Missense_Mutation p.E398K 0.24 tolerated(0.45) benign(0.003) TCGA-E7-A85H-01 13 31724129 31724129 T A HSPH1 Missense_Mutation p.N367Y 0.03 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 13 38211203 38211203 C A TRPC4 Missense_Mutation p.G929V 0.12 tolerated_low_confidence(0.16) benign(0.159) TCGA-E7-A85H-01 13 38211630 38211630 C T TRPC4 Missense_Mutation p.D787N 0.15 tolerated(0.26) benign(0.199) TCGA-E7-A85H-01 13 41639164 41639164 C G WBP4 Missense_Mutation p.H30D 0.26 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 13 42830464 42830464 G A FHP1 RNA 0.54 TCGA-E7-A85H-01 13 52865664 52865664 T C RP11-248G5.8 RNA 0.39 TCGA-E7-A85H-01 13 73336128 73336128 C T DIS3 Missense_Mutation p.D759N 0.66 tolerated(0.24) benign(0.088) TCGA-E7-A85H-01 14 101532328 101532328 C T MIR410 RNA 0.75 TCGA-E7-A85H-01 14 20388941 20388941 T C OR4K5 Missense_Mutation p.M59T 0.22 deleterious(0) probably_damaging(0.997) TCGA-E7-A85H-01 14 21969218 21969218 T A METTL3 Missense_Mutation p.N318I 0.25 deleterious(0) probably_damaging(0.996) TCGA-E7-A85H-01 14 23889307 23889307 G A MYH7 Missense_Mutation p.S1158F 0.07 deleterious(0.02) probably_damaging(0.985) TCGA-E7-A85H-01 14 24771251 24771251 G T NOP9 Missense_Mutation p.A297S 0.04 tolerated(0.16) benign(0.15) TCGA-E7-A85H-01 14 65249256 65249256 T A SPTB Missense_Mutation p.M1340L 0.69 tolerated(0.09) benign(0.015) TCGA-E7-A85H-01 14 73721273 73721273 G A PAPLN Missense_Mutation p.G425D 0.72 tolerated(0.13) benign(0.222) TCGA-E7-A85H-01 14 76905875 76905875 C T ESRRB Missense_Mutation p.P60L 0.62 deleterious(0.02) benign(0.206) TCGA-E7-A85H-01 14 77297621 77297621 T C C14orf166B Missense_Mutation p.V98A 0.40 tolerated(0.17) benign(0.144) TCGA-E7-A85H-01 14 92600430 92600430 C A CPSF2 Silent p.V75V 0.65 TCGA-E7-A85H-01 14 93118091 93118091 T C RIN3 Missense_Mutation p.W233R 0.84 deleterious(0) unknown(0) TCGA-E7-A85H-01 14 95556946 95556946 T A DICER1 Silent p.G1886G 0.80 TCGA-E7-A85H-01 15 20874815 20874815 T A NBEAP1 RNA 0.11 TCGA-E7-A85H-01 15 25958861 25958861 G A ATP10A Silent p.A768A 0.68 TCGA-E7-A85H-01 15 28475549 28475549 A G HERC2 Silent p.N1591N 0.49 TCGA-E7-A85H-01 15 29561810 29561810 C T NDNL2 Missense_Mutation p.E34K 0.70 tolerated_low_confidence(0.83) benign(0.001) TCGA-E7-A85H-01 15 42156121 42156121 G T SPTBN5 Missense_Mutation p.S2340R 0.85 benign(0.386) TCGA-E7-A85H-01 15 52564861 52564861 T C MYO5C Silent p.T222T 0.40 TCGA-E7-A85H-01 15 65677378 65677378 G A IGDCC4 Missense_Mutation p.R1086W 0.26 deleterious(0.05) possibly_damaging(0.462) TCGA-E7-A85H-01 15 78316814 78316814 C G TBC1D2B Missense_Mutation p.R385P 0.23 tolerated(0.13) benign(0.001) TCGA-E7-A85H-01 15 88799228 88799228 G A NTRK3 Missense_Mutation p.L53F 0.25 tolerated(0.7) benign(0.008) TCGA-E7-A85H-01 15 90628086 90628086 C A IDH2 Missense_Mutation p.M411I 0.14 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-E7-A85H-01 16 11000780 11000780 C T CIITA Silent p.L477L 0.17 TCGA-E7-A85H-01 16 15820841 15820841 C G MYH11 Missense_Mutation p.R1248P 0.31 probably_damaging(0.941) TCGA-E7-A85H-01 16 2048239 2048263 GATGATCCTGGCGATGGCTTGCAGG - ZNF598 Frame_Shift_Del p.L896Rfs*28 0.10 TCGA-E7-A85H-01 16 22345025 22345025 T A POLR3E 3'UTR 0.59 TCGA-E7-A85H-01 16 23598613 23598613 G A NDUFAB1 Missense_Mutation p.R66C 0.08 tolerated(0.09) benign(0.022) TCGA-E7-A85H-01 16 24581389 24581389 G C RBBP6 Missense_Mutation p.K1126N 0.52 deleterious_low_confidence(0) unknown(0) TCGA-E7-A85H-01 16 24583390 24583390 A G RBBP6 Missense_Mutation p.K1668R 0.54 deleterious_low_confidence(0) unknown(0) TCGA-E7-A85H-01 16 25251166 25251166 T C ZKSCAN2 Missense_Mutation p.K959E 0.28 deleterious_low_confidence(0.04) benign(0.008) TCGA-E7-A85H-01 16 30080205 30080205 G A ALDOA Missense_Mutation p.R203H 0.23 deleterious(0.03) benign(0.204) TCGA-E7-A85H-01 16 30124848 30124848 G C GDPD3 5'UTR 0.23 TCGA-E7-A85H-01 16 30732137 30732137 G C SRCAP Missense_Mutation p.E1031Q 0.17 unknown(0) TCGA-E7-A85H-01 16 334498 334498 C T PDIA2 Missense_Mutation p.A104V 0.45 tolerated(0.25) benign(0.284) TCGA-E7-A85H-01 16 52473239 52473239 G - TOX3 Frame_Shift_Del p.I544Sfs*70 0.50 TCGA-E7-A85H-01 16 55516927 55516927 G T MMP2 Missense_Mutation p.G87V 0.06 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 16 55600621 55600621 C A CAPNS2 5'UTR 0.17 TCGA-E7-A85H-01 16 67331464 67331464 G C KCTD19 Missense_Mutation p.I363M 0.30 tolerated(1) benign(0) TCGA-E7-A85H-01 16 68279380 68279380 C T PLA2G15 Silent p.L17L 0.75 TCGA-E7-A85H-01 16 70301635 70301635 G C AARS Silent p.L383L 0.38 TCGA-E7-A85H-01 16 70896052 70896052 C T HYDIN Silent p.V3892V 0.68 TCGA-E7-A85H-01 16 82069215 82069215 G C HSD17B2 Silent p.S62S 0.67 TCGA-E7-A85H-01 16 89816263 89816263 G A FANCA Silent p.L1038L 0.88 TCGA-E7-A85H-01 16 89973698 89973698 G C TCF25 Silent p.S589S 0.20 TCGA-E7-A85H-01 17 11666910 11666910 C G DNAH9 Silent p.G2383G 0.28 TCGA-E7-A85H-01 17 18872411 18872411 G T SLC5A10 Missense_Mutation p.W167L 0.49 tolerated(0.31) probably_damaging(0.999) TCGA-E7-A85H-01 17 20910273 20910273 G A USP22 Missense_Mutation p.R420W 0.22 deleterious(0) probably_damaging(0.953) TCGA-E7-A85H-01 17 25637097 25637097 C T WSB1 Missense_Mutation p.P299S 0.10 tolerated(0.62) probably_damaging(0.996) TCGA-E7-A85H-01 17 26888488 26888488 C T PIGS Missense_Mutation p.E210K 0.19 tolerated(0.87) benign(0.063) TCGA-E7-A85H-01 17 27208908 27208908 T C FLOT2 Missense_Mutation p.K280E 0.23 deleterious(0) benign(0.103) TCGA-E7-A85H-01 17 27903237 27903237 C T GIT1 Splice_Site p.X546_splice 0.50 TCGA-E7-A85H-01 17 30190507 30190507 T A UTP6 Missense_Mutation p.E555D 0.26 deleterious(0.01) possibly_damaging(0.873) TCGA-E7-A85H-01 17 3030698 3030698 T C OR1G1 Missense_Mutation p.I50V 0.09 tolerated(0.52) benign(0) TCGA-E7-A85H-01 17 30374866 30374866 A C LRRC37B Missense_Mutation p.I777L 0.55 deleterious(0.02) benign(0.141) TCGA-E7-A85H-01 17 34136521 34136521 C G TAF15 5'UTR 0.18 TCGA-E7-A85H-01 17 35614625 35614625 G A ACACA Missense_Mutation p.S609L 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-E7-A85H-01 17 39155922 39155922 C T KRTAP3-2 Missense_Mutation p.V62M 0.24 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-E7-A85H-01 17 39521058 39521058 C A KRT33B Missense_Mutation p.R357L 0.03 deleterious(0) probably_damaging(0.966) TCGA-E7-A85H-01 17 39768679 39768679 C T KRT16 Missense_Mutation p.G88S 0.26 tolerated(0.23) unknown(0) TCGA-E7-A85H-01 17 40870491 40870491 T C EZH1 Silent p.K304K 0.52 TCGA-E7-A85H-01 17 42501721 42501721 T C GPATCH8 Missense_Mutation p.K163R 0.43 deleterious(0) probably_damaging(0.966) TCGA-E7-A85H-01 17 43221031 43221031 C T ACBD4 3'UTR 0.32 TCGA-E7-A85H-01 17 44953616 44953616 G A WNT9B Silent p.V202V 0.44 TCGA-E7-A85H-01 17 46054136 46054136 C T CDK5RAP3 Missense_Mutation p.S286F 0.36 deleterious(0.01) benign(0.285) TCGA-E7-A85H-01 17 47782502 47782502 T C SLC35B1 Missense_Mutation p.Y171C 0.23 tolerated(0.09) possibly_damaging(0.726) TCGA-E7-A85H-01 17 48277267 48277267 C T COL1A1 Missense_Mutation p.D49N 0.46 unknown(0) TCGA-E7-A85H-01 17 55950147 55950147 C A CUEDC1 Nonsense_Mutation p.G221* 0.10 TCGA-E7-A85H-01 17 56405207 56405207 A G BZRAP1 Silent p.H25H 0.20 TCGA-E7-A85H-01 17 59485709 59485709 G A TBX2 Missense_Mutation p.E661K 0.71 tolerated(0.21) benign(0.114) TCGA-E7-A85H-01 17 60782869 60782869 C T MARCH10 Intron 0.46 TCGA-E7-A85H-01 17 65888045 65888045 C T BPTF Silent p.I650I 0.57 TCGA-E7-A85H-01 17 71228421 71228431 CGGCGTCTGCT - FAM104A Frame_Shift_Del p.A6Kfs*2 0.36 TCGA-E7-A85H-01 17 72694561 72694561 A C CD300LF Missense_Mutation p.L169R 0.13 deleterious(0) probably_damaging(0.976) TCGA-E7-A85H-01 17 74005452 74005452 G C EVPL Missense_Mutation p.N1278K 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-E7-A85H-01 17 79514630 79514630 C T C17orf70 Missense_Mutation p.S493N 0.63 deleterious(0.01) probably_damaging(0.957) TCGA-E7-A85H-01 17 79871995 79871995 G A SIRT7 Missense_Mutation p.R289W 0.35 deleterious(0) possibly_damaging(0.889) TCGA-E7-A85H-01 17 80615888 80615888 C G RAB40B Missense_Mutation p.G230R 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-E7-A85H-01 18 21096281 21096281 C A C18orf8 Intron 0.38 TCGA-E7-A85H-01 18 28737513 28737513 A C DSC1 Missense_Mutation p.S58A 0.30 deleterious(0.02) possibly_damaging(0.578) TCGA-E7-A85H-01 18 42530858 42530858 T C SETBP1 Missense_Mutation p.L518P 0.23 deleterious(0.04) probably_damaging(0.921) TCGA-E7-A85H-01 18 43842929 43842929 T C C18orf25 Missense_Mutation p.S354P 0.45 benign(0.027) TCGA-E7-A85H-01 18 66721353 66721355 CAG AAGTTTTT CCDC102B Frame_Shift_Ins p.R508Sfs*34 0.10 TCGA-E7-A85H-01 19 11978839 11978839 A C ZNF439 Missense_Mutation p.T319P 0.08 deleterious(0.01) possibly_damaging(0.89) TCGA-E7-A85H-01 19 12542444 12542444 A G ZNF443 Missense_Mutation p.L181S 0.47 tolerated(0.43) benign(0.045) TCGA-E7-A85H-01 19 13246121 13246121 G A NACC1 Missense_Mutation p.V34M 0.25 deleterious(0) probably_damaging(0.992) TCGA-E7-A85H-01 19 13246210 13246229 CAGCGCCGTGGTGGAGCTGC - NACC1 Frame_Shift_Del p.S64Gfs*87 0.60 TCGA-E7-A85H-01 19 14589328 14589328 G T GIPC1 Missense_Mutation p.A301D 0.26 deleterious(0) possibly_damaging(0.655) TCGA-E7-A85H-01 19 16514635 16514648 TCCTCCTGCTGCAA - EPS15L1 Frame_Shift_Del p.L508Nfs*40 0.15 TCGA-E7-A85H-01 19 17881377 17881377 G C FCHO1 Missense_Mutation p.E160D 0.22 tolerated(0.19) benign(0.002) TCGA-E7-A85H-01 19 21132065 21132065 A G ZNF85 Missense_Mutation p.K249E 0.46 deleterious(0.05) probably_damaging(0.992) TCGA-E7-A85H-01 19 21240024 21240024 C A ZNF430 Missense_Mutation p.L304I 0.38 deleterious(0.02) probably_damaging(0.985) TCGA-E7-A85H-01 19 2191215 2191215 G A DOT1L Missense_Mutation p.D157N 0.28 deleterious(0) probably_damaging(0.994) TCGA-E7-A85H-01 19 23543998 23543998 T A ZNF91 Missense_Mutation p.I595F 0.17 deleterious(0.02) probably_damaging(0.99) TCGA-E7-A85H-01 19 3009614 3009614 C T TLE2 Missense_Mutation p.V367M 0.61 tolerated(0.25) benign(0.004) TCGA-E7-A85H-01 19 34818935 34818935 G A KIAA0355 Missense_Mutation p.R328K 0.41 tolerated(0.1) possibly_damaging(0.87) TCGA-E7-A85H-01 19 36558747 36558747 C T WDR62 Silent p.P239P 0.35 TCGA-E7-A85H-01 19 37038021 37038021 C A ZNF529 Missense_Mutation p.C480F 0.51 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 19 38572484 38572484 G A SIPA1L3 Silent p.L93L 0.25 TCGA-E7-A85H-01 19 39998098 39998098 G A DLL3 Missense_Mutation p.V505M 0.50 deleterious(0.04) benign(0.002) TCGA-E7-A85H-01 19 40720904 40720904 G A MAP3K10 Missense_Mutation p.R857H 0.44 tolerated(0.07) benign(0.006) TCGA-E7-A85H-01 19 41450314 41450336 ACACAGAGGCAGTCATCCGTGAG - AC092071.1 5'Flank 0.30 TCGA-E7-A85H-01 19 42856569 42856569 G C MEGF8 Missense_Mutation p.R1037P 0.20 deleterious(0) benign(0.276) TCGA-E7-A85H-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.61 deleterious(0) probably_damaging(0.979) TCGA-E7-A85H-01 19 46141790 46141790 G A EML2 Missense_Mutation p.P252L 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-E7-A85H-01 19 47984254 47984254 G A KPTN Silent p.L162L 0.67 TCGA-E7-A85H-01 19 48229379 48229379 C G EHD2 Missense_Mutation p.F271L 0.30 tolerated(0.11) benign(0.047) TCGA-E7-A85H-01 19 48244486 48244486 G T EHD2 Missense_Mutation p.V477L 0.15 tolerated(0.21) benign(0.008) TCGA-E7-A85H-01 19 49132318 49132318 G A SPHK2 Missense_Mutation p.R418H 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-E7-A85H-01 19 50862018 50862018 C T NAPSA Missense_Mutation p.R352H 0.21 tolerated(0.06) benign(0.027) TCGA-E7-A85H-01 19 52249860 52249860 G A FPR1 Missense_Mutation p.P130S 0.20 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 19 52919027 52919027 C G ZNF528 Missense_Mutation p.Q308E 0.19 tolerated(0.21) benign(0.034) TCGA-E7-A85H-01 19 53958725 53958725 G A ZNF761 RNA 0.20 TCGA-E7-A85H-01 19 55142521 55142521 C T LILRB1 5'UTR 0.13 TCGA-E7-A85H-01 19 56133998 56133998 C T ZNF784 Missense_Mutation p.D31N 0.24 deleterious_low_confidence(0) possibly_damaging(0.612) TCGA-E7-A85H-01 19 58058965 58058965 C A ZNF550 Missense_Mutation p.W175L 0.57 tolerated(0.66) possibly_damaging(0.654) TCGA-E7-A85H-01 19 58361439 58361439 G A ZNF587 Silent p.Q11Q 0.19 TCGA-E7-A85H-01 19 58370973 58370973 A G ZNF587 Missense_Mutation p.H398R 0.43 deleterious(0) possibly_damaging(0.824) TCGA-E7-A85H-01 19 58598332 58598332 C A ZSCAN18 Missense_Mutation p.W285L 0.18 deleterious(0) probably_damaging(0.997) TCGA-E7-A85H-01 19 7734266 7734266 C T RETN Silent p.S18S 0.27 TCGA-E7-A85H-01 19 9801852 9801852 A G ZNF812 Silent p.N109N 0.52 TCGA-E7-A85H-01 1 100127921 100127921 T C PALMD Missense_Mutation p.I31T 0.32 deleterious(0) benign(0.193) TCGA-E7-A85H-01 1 100154383 100154383 T A PALMD Missense_Mutation p.S189R 0.22 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 1 102269866 102269866 G C OLFM3 Silent p.A435A 0.17 TCGA-E7-A85H-01 1 114165617 114165617 G T MAGI3 Splice_Site p.X454_splice 0.40 TCGA-E7-A85H-01 1 114243458 114243458 G A PHTF1 Silent p.T668T 0.33 TCGA-E7-A85H-01 1 115420783 115420783 G T SYCP1 Missense_Mutation p.E290D 0.29 tolerated(0.11) possibly_damaging(0.676) TCGA-E7-A85H-01 1 117491865 117491865 T A PTGFRN Missense_Mutation p.L295Q 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 1 118642346 118642346 C T SPAG17 Missense_Mutation p.A238T 0.22 tolerated(1) benign(0.001) TCGA-E7-A85H-01 1 12337514 12337514 C G VPS13D Missense_Mutation p.S1290C 0.05 probably_damaging(0.988) TCGA-E7-A85H-01 1 12856093 12856093 C A PRAMEF1 Missense_Mutation p.P458H 0.13 deleterious(0) probably_damaging(0.939) TCGA-E7-A85H-01 1 145096583 145096583 G A SEC22B RNA 0.22 TCGA-E7-A85H-01 1 145536044 145536044 T G ITGA10 Silent p.R712R 0.16 TCGA-E7-A85H-01 1 145704284 145704284 T C CD160 Missense_Mutation p.T45A 0.47 deleterious(0) possibly_damaging(0.606) TCGA-E7-A85H-01 1 146696682 146696682 A G FMO5 Intron 0.31 TCGA-E7-A85H-01 1 150238871 150238871 C T APH1A Intron 0.42 TCGA-E7-A85H-01 1 150772119 150772119 C T CTSK Missense_Mutation p.E229K 0.07 tolerated(0.71) benign(0.003) TCGA-E7-A85H-01 1 152328889 152328889 G A FLG2 Missense_Mutation p.S458F 0.63 unknown(0) TCGA-E7-A85H-01 1 153029177 153029177 C A SPRR2A Missense_Mutation p.C12F 0.24 deleterious_low_confidence(0) unknown(0) TCGA-E7-A85H-01 1 153591383 153591383 G A S100A13 Silent p.I95I 0.24 TCGA-E7-A85H-01 1 155031187 155031187 T C ADAM15 Missense_Mutation p.V640A 0.60 tolerated(0.37) possibly_damaging(0.685) TCGA-E7-A85H-01 1 155448912 155448912 T A ASH1L Missense_Mutation p.H1250L 0.72 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-E7-A85H-01 1 156642471 156642471 C T NES Silent p.G503G 0.17 TCGA-E7-A85H-01 1 161494666 161494666 A G HSPA6 Missense_Mutation p.K73R 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.815) TCGA-E7-A85H-01 1 161494982 161494982 C A HSPA6 Silent p.P178P 0.13 TCGA-E7-A85H-01 1 16621380 16621380 A G FBXO42 Missense_Mutation p.Y134H 0.51 deleterious(0) probably_damaging(0.996) TCGA-E7-A85H-01 1 168059825 168059825 C A GPR161 Missense_Mutation p.G414V 0.11 deleterious(0) probably_damaging(0.993) TCGA-E7-A85H-01 1 171300818 171300818 A G FMO4 Missense_Mutation p.E175G 0.05 deleterious(0.01) possibly_damaging(0.886) TCGA-E7-A85H-01 1 179322804 179322804 A T SOAT1 3'UTR 0.23 TCGA-E7-A85H-01 1 181754944 181754944 C T CACNA1E Silent p.P1925P 0.36 TCGA-E7-A85H-01 1 182850557 182850557 C G DHX9 Missense_Mutation p.A928G 0.20 deleterious(0.01) benign(0.025) TCGA-E7-A85H-01 1 182850748 182850748 C G DHX9 Silent p.L960L 0.24 TCGA-E7-A85H-01 1 182852703 182852703 C T DHX9 Silent p.L1065L 0.25 TCGA-E7-A85H-01 1 185269385 185269385 G A IVNS1ABP Missense_Mutation p.P445S 0.30 tolerated(0.54) benign(0.009) TCGA-E7-A85H-01 1 193028643 193028643 G A UCHL5 5'Flank 0.47 TCGA-E7-A85H-01 1 200587941 200587941 A G KIF14 5'UTR 0.50 TCGA-E7-A85H-01 1 200877971 200877971 G A C1orf106 Missense_Mutation p.E230K 0.42 deleterious(0.03) possibly_damaging(0.662) TCGA-E7-A85H-01 1 201824305 201824305 C A IPO9 Missense_Mutation p.S322Y 0.64 deleterious(0) possibly_damaging(0.711) TCGA-E7-A85H-01 1 20474795 20474795 C T PLA2G2F Silent p.V179V 0.63 TCGA-E7-A85H-01 1 204926826 204926826 A G NFASC Missense_Mutation p.H193R 0.52 deleterious(0.02) benign(0.039) TCGA-E7-A85H-01 1 205180419 205180424 GCGACA - DSTYK In_Frame_Del p.V81_A82del 0.45 TCGA-E7-A85H-01 1 206941972 206941972 C T IL10 3'UTR 0.24 TCGA-E7-A85H-01 1 209954732 209954732 T C TRAF3IP3 Missense_Mutation p.Y498H 0.81 deleterious(0) probably_damaging(0.945) TCGA-E7-A85H-01 1 212538619 212538619 T C TMEM206 Missense_Mutation p.M392V 0.78 tolerated(0.16) probably_damaging(0.981) TCGA-E7-A85H-01 1 22304935 22304935 C T CELA3B Silent p.S39S 0.06 TCGA-E7-A85H-01 1 23885953 23885953 A T ID3 5'UTR 0.20 TCGA-E7-A85H-01 1 24447703 24447703 G T IL22RA1 Missense_Mutation p.S439R 0.52 tolerated(0.08) benign(0.015) TCGA-E7-A85H-01 1 248309250 248309250 C T OR2M5 Silent p.S267S 0.79 TCGA-E7-A85H-01 1 26135257 26135257 C G SEPN1 Missense_Mutation p.P242A 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-E7-A85H-01 1 27101128 27101129 - A ARID1A Frame_Shift_Ins p.N1471Kfs*20 0.39 TCGA-E7-A85H-01 1 31762157 31762157 G T SNRNP40 Missense_Mutation p.P159T 0.49 tolerated(0.1) benign(0.281) TCGA-E7-A85H-01 1 32829610 32829610 A T TSSK3 Missense_Mutation p.D187V 0.14 deleterious(0) possibly_damaging(0.63) TCGA-E7-A85H-01 1 3301786 3301786 A G PRDM16 Missense_Mutation p.K170R 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-E7-A85H-01 1 33237370 33237371 - GC KIAA1522 Frame_Shift_Ins p.K865Afs*11 0.36 TCGA-E7-A85H-01 1 33613158 33613158 C T TRIM62 Missense_Mutation p.V350I 0.22 tolerated(0.45) possibly_damaging(0.493) TCGA-E7-A85H-01 1 36025984 36025984 G C NCDN Missense_Mutation p.D78H 0.06 deleterious(0) probably_damaging(0.998) TCGA-E7-A85H-01 1 36228911 36228911 T A CLSPN Silent p.V198V 0.26 TCGA-E7-A85H-01 1 43664309 43664309 T C WDR65 Missense_Mutation p.C474R 0.27 deleterious(0) probably_damaging(0.96) TCGA-E7-A85H-01 1 43916700 43916700 G A SZT2 3'UTR 0.35 TCGA-E7-A85H-01 1 50663104 50663105 - GACAATTT ELAVL4 Frame_Shift_Ins p.L267Tfs*10 0.08 TCGA-E7-A85H-01 1 55072931 55072931 G A ACOT11 Missense_Mutation p.D499N 0.15 deleterious(0.04) benign(0.121) TCGA-E7-A85H-01 1 70505475 70505475 G C LRRC7 Missense_Mutation p.R1285T 0.24 deleterious(0) probably_damaging(0.989) TCGA-E7-A85H-01 1 75704264 75704264 C G SLC44A5 Missense_Mutation p.S197T 0.29 tolerated(0.07) benign(0.101) TCGA-E7-A85H-01 1 85930490 85930490 A G DDAH1 Missense_Mutation p.V80A 0.47 tolerated(0.49) benign(0.014) TCGA-E7-A85H-01 1 880117 880117 G C NOC2L Missense_Mutation p.P736R 0.17 deleterious(0.05) probably_damaging(1) TCGA-E7-A85H-01 1 94048113 94048113 G A BCAR3 Silent p.I477I 0.35 TCGA-E7-A85H-01 1 980882 980882 G A AGRN Missense_Mutation p.D839N 0.12 tolerated(0.08) possibly_damaging(0.831) TCGA-E7-A85H-01 1 984806 984806 G A AGRN Missense_Mutation p.G1497S 0.09 deleterious(0.04) possibly_damaging(0.808) TCGA-E7-A85H-01 20 13866039 13866039 C G SEL1L2 Missense_Mutation p.G304A 0.43 deleterious(0) probably_damaging(0.98) TCGA-E7-A85H-01 20 30363766 30363766 C G TPX2 Missense_Mutation p.F235L 0.08 tolerated(0.22) benign(0.013) TCGA-E7-A85H-01 20 43118020 43118020 A G TTPAL Silent p.V289V 0.18 TCGA-E7-A85H-01 20 47605933 47605933 C T ARFGEF2 Missense_Mutation p.T882I 0.20 tolerated(0.25) benign(0.049) TCGA-E7-A85H-01 20 49366789 49366789 G T PARD6B Missense_Mutation p.D295Y 0.08 deleterious(0) probably_damaging(0.909) TCGA-E7-A85H-01 20 54970640 54970640 G A CSTF1 Missense_Mutation p.R11H 0.11 deleterious(0) possibly_damaging(0.828) TCGA-E7-A85H-01 20 62193082 62193082 C T HELZ2 Silent p.R2236R 0.22 TCGA-E7-A85H-01 20 62273518 62273518 G C STMN3 Silent p.L142L 0.26 TCGA-E7-A85H-01 20 62273536 62273536 G C STMN3 Silent p.L136L 0.21 TCGA-E7-A85H-01 20 62737190 62737190 C T NPBWR2 Missense_Mutation p.R332Q 0.61 tolerated(0.56) benign(0.001) TCGA-E7-A85H-01 20 6750884 6750884 G A BMP2 Silent p.S37S 0.62 TCGA-E7-A85H-01 21 19775860 19775860 A G TMPRSS15 Missense_Mutation p.I27T 0.58 tolerated(0.07) benign(0.009) TCGA-E7-A85H-01 21 30329183 30329183 G C LTN1 Missense_Mutation p.L1040V 0.55 tolerated(0.11) benign(0.088) TCGA-E7-A85H-01 21 30547040 30547040 C T MAP3K7CL Missense_Mutation p.L186F 0.53 deleterious(0) probably_damaging(0.998) TCGA-E7-A85H-01 21 31988892 31988892 G A KRTAP20-1 Missense_Mutation p.G40D 0.55 unknown(0) TCGA-E7-A85H-01 21 33044006 33044006 A G SCAF4 Silent p.N1050N 0.29 TCGA-E7-A85H-01 21 33976445 33976445 G A AP000275.65 Missense_Mutation p.S175L 0.22 deleterious(0.01) possibly_damaging(0.755) TCGA-E7-A85H-01 21 36252865 36252865 C G RUNX1 Missense_Mutation p.R166P 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 21 37741563 37741563 G T MORC3 Missense_Mutation p.D633Y 0.20 deleterious(0.01) possibly_damaging(0.848) TCGA-E7-A85H-01 21 38560804 38560804 A G TTC3 Silent p.V1644V 0.26 TCGA-E7-A85H-01 21 43867324 43867324 A G UBASH3A 3'UTR 0.31 TCGA-E7-A85H-01 21 44527576 44527576 C G U2AF1 Missense_Mutation p.G10A 0.46 deleterious(0) possibly_damaging(0.844) TCGA-E7-A85H-01 21 47552477 47552477 C T COL6A2 3'UTR 0.21 TCGA-E7-A85H-01 21 47787024 47787024 C G PCNT Silent p.T1045T 0.14 TCGA-E7-A85H-01 22 22123490 22123490 A T MAPK1 3'UTR 0.20 TCGA-E7-A85H-01 22 32194595 32194595 C T DEPDC5 Missense_Mutation p.T300I 0.22 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 22 35796450 35796450 C G MCM5 Missense_Mutation p.P7A 0.24 tolerated(0.6) benign(0.002) TCGA-E7-A85H-01 22 37769782 37769782 C T ELFN2 Missense_Mutation p.R598Q 0.55 tolerated(0.06) benign(0.201) TCGA-E7-A85H-01 22 50596529 50596529 C G MOV10L1 Missense_Mutation p.P1037R 0.48 deleterious(0) possibly_damaging(0.844) TCGA-E7-A85H-01 2 114674550 114674550 G T ACTR3 Missense_Mutation p.D64Y 0.70 tolerated(0.07) probably_damaging(0.995) TCGA-E7-A85H-01 2 122488511 122488511 C T NIFK Silent p.K174K 0.48 TCGA-E7-A85H-01 2 154334879 154334879 G A RPRM Silent p.L67L 0.46 TCGA-E7-A85H-01 2 158991492 158991492 A G UPP2 3'UTR 0.53 TCGA-E7-A85H-01 2 161056600 161056600 C G ITGB6 5'UTR 0.23 TCGA-E7-A85H-01 2 162092088 162092088 A G TANK 3'UTR 0.33 TCGA-E7-A85H-01 2 179257144 179257144 A T OSBPL6 Missense_Mutation p.M843L 0.57 tolerated(0.08) benign(0.003) TCGA-E7-A85H-01 2 179428666 179428666 C A TTN Missense_Mutation p.G27398V 0.22 TCGA-E7-A85H-01 2 179428667 179428667 C T TTN Missense_Mutation p.G27398S 0.21 TCGA-E7-A85H-01 2 179588822 179588822 C T TTN Missense_Mutation p.G7055E 0.27 TCGA-E7-A85H-01 2 182543081 182543081 A T NEUROD1 Silent p.V169V 0.45 TCGA-E7-A85H-01 2 198968646 198968646 A G PLCL1 Missense_Mutation p.I1031V 0.30 tolerated(0.22) benign(0.063) TCGA-E7-A85H-01 2 204320185 204320185 T A RAPH1 Missense_Mutation p.Y426F 0.52 possibly_damaging(0.758) TCGA-E7-A85H-01 2 208986530 208986530 C T CRYGD Nonsense_Mutation p.W131* 0.19 TCGA-E7-A85H-01 2 210559922 210559922 G T MAP2 Missense_Mutation p.A1010S 0.47 tolerated_low_confidence(0.18) benign(0.297) TCGA-E7-A85H-01 2 233433742 233433742 G A EIF4E2 3'UTR 0.44 TCGA-E7-A85H-01 2 234622089 234622089 C G UGT1A5 Missense_Mutation p.T151R 0.36 deleterious(0) possibly_damaging(0.831) TCGA-E7-A85H-01 2 238725972 238725972 T C RBM44 Missense_Mutation p.V138A 0.61 deleterious(0.01) benign(0.164) TCGA-E7-A85H-01 2 241468694 241468702 TCCTGTCCC - ANKMY1 In_Frame_Del p.E146_Q148del 0.38 TCGA-E7-A85H-01 2 242598542 242598542 A G ATG4B Missense_Mutation p.T160A 0.19 tolerated(0.24) benign(0.004) TCGA-E7-A85H-01 2 29386804 29386804 C T CLIP4 Missense_Mutation p.P548S 0.22 deleterious(0.04) probably_damaging(0.984) TCGA-E7-A85H-01 2 33817204 33817204 T G FAM98A Missense_Mutation p.T94P 0.29 deleterious(0.01) probably_damaging(0.921) TCGA-E7-A85H-01 2 38893266 38893266 G C GALM 5'UTR 0.28 TCGA-E7-A85H-01 2 43452248 43452248 T A ZFP36L2 Missense_Mutation p.D232V 0.40 deleterious(0.02) probably_damaging(0.937) TCGA-E7-A85H-01 2 48050450 48050450 T A FBXO11 Missense_Mutation p.E483V 0.40 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 2 58392925 58392925 C T FANCL Missense_Mutation p.E214K 0.39 tolerated(0.33) benign(0.001) TCGA-E7-A85H-01 2 61622073 61622073 G A USP34 Missense_Mutation p.S223F 0.35 deleterious(0.03) probably_damaging(0.974) TCGA-E7-A85H-01 2 71185528 71185528 A G ATP6V1B1 Silent p.L113L 0.42 TCGA-E7-A85H-01 2 74594524 74594524 G T DCTN1 Silent p.A736A 0.16 TCGA-E7-A85H-01 2 85604591 85604591 C T ELMOD3 Silent p.H244H 0.53 TCGA-E7-A85H-01 2 85779682 85779682 T C GGCX Silent p.T432T 0.23 TCGA-E7-A85H-01 3 10353718 10353718 C T SEC13 Silent p.G127G 0.66 TCGA-E7-A85H-01 3 111263997 111263997 A G CD96 Missense_Mutation p.M56V 0.32 tolerated(0.28) benign(0.031) TCGA-E7-A85H-01 3 113128028 113128028 G A WDR52 Missense_Mutation p.S272F 0.08 deleterious(0) possibly_damaging(0.905) TCGA-E7-A85H-01 3 113252066 113252066 C A SIDT1 Missense_Mutation p.F66L 0.12 deleterious(0.01) benign(0.049) TCGA-E7-A85H-01 3 121828142 121828142 A G CD86 Missense_Mutation p.H245R 0.39 tolerated(0.4) benign(0.003) TCGA-E7-A85H-01 3 124437940 124437940 G C RP11-71H17.7 5'Flank 0.56 TCGA-E7-A85H-01 3 124720697 124720697 T C HEG1 Silent p.R1172R 0.60 TCGA-E7-A85H-01 3 126229577 126229577 C G UROC1 Missense_Mutation p.E63Q 0.09 deleterious(0) probably_damaging(0.968) TCGA-E7-A85H-01 3 126723975 126723975 G A PLXNA1 Missense_Mutation p.V596I 0.17 tolerated(0.33) benign(0.002) TCGA-E7-A85H-01 3 126746897 126746897 C T PLXNA1 Missense_Mutation p.L1493F 0.23 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 3 132207201 132207201 C T DNAJC13 Silent p.I1109I 0.54 TCGA-E7-A85H-01 3 134670357 134670357 C T EPHB1 Missense_Mutation p.R90C 0.14 deleterious(0) probably_damaging(0.953) TCGA-E7-A85H-01 3 135914005 135914005 C T MSL2 5'UTR 0.38 TCGA-E7-A85H-01 3 137893537 137893537 A T DBR1 Nonsense_Mutation p.L34* 0.48 TCGA-E7-A85H-01 3 151163601 151163601 C T IGSF10 Missense_Mutation p.V1390I 0.34 tolerated(0.61) benign(0.001) TCGA-E7-A85H-01 3 15731661 15731661 T C ANKRD28 Missense_Mutation p.N580D 0.57 tolerated(1) benign(0.001) TCGA-E7-A85H-01 3 170201151 170201151 G A SLC7A14 Missense_Mutation p.P356L 0.30 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 3 183388990 183388990 G T KLHL24 Missense_Mutation p.D465Y 0.47 deleterious(0.02) probably_damaging(0.98) TCGA-E7-A85H-01 3 184076836 184076836 C - CLCN2 Frame_Shift_Del p.W49* 0.23 TCGA-E7-A85H-01 3 186969426 186969426 A G MASP1 Missense_Mutation p.L336P 0.36 deleterious(0) possibly_damaging(0.638) TCGA-E7-A85H-01 3 186971030 186971030 T C MASP1 Missense_Mutation p.H273R 0.33 deleterious(0) benign(0.012) TCGA-E7-A85H-01 3 38768192 38768192 G A SCN10A Missense_Mutation p.P998S 0.58 deleterious(0.02) probably_damaging(0.998) TCGA-E7-A85H-01 3 40557563 40557563 G A ZNF620 Missense_Mutation p.E160K 0.28 tolerated(0.83) benign(0.018) TCGA-E7-A85H-01 3 49756197 49756197 C A AMIGO3 Missense_Mutation p.W234C 0.73 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 3 49758232 49758232 G A RNF123 Splice_Site p.X1215_splice 0.62 TCGA-E7-A85H-01 3 50655026 50655032 GGGCCCT - MAPKAPK3 Frame_Shift_Del p.G11Cfs*27 0.70 TCGA-E7-A85H-01 4 110758661 110758661 A T RRH Missense_Mutation p.Y207F 0.40 tolerated(0.27) possibly_damaging(0.679) TCGA-E7-A85H-01 4 111539531 111539531 G C PITX2 Missense_Mutation p.P242R 0.34 deleterious(0) probably_damaging(0.986) TCGA-E7-A85H-01 4 122744747 122744747 C T CCNA2 Missense_Mutation p.E13K 0.33 tolerated_low_confidence(0.05) benign(0.122) TCGA-E7-A85H-01 4 134071974 134071975 - A PCDH10 Frame_Shift_Ins p.Q228Afs*18 0.41 TCGA-E7-A85H-01 4 151142828 151142828 G T DCLK2 Splice_Site p.X395_splice 0.54 TCGA-E7-A85H-01 4 156725835 156725835 C T GUCY1B3 Missense_Mutation p.L549F 0.10 deleterious(0.01) probably_damaging(0.932) TCGA-E7-A85H-01 4 156725845 156725845 G A GUCY1B3 Missense_Mutation p.R552Q 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-E7-A85H-01 4 159443179 159443179 T C RXFP1 Splice_Site p.X17_splice 0.18 TCGA-E7-A85H-01 4 183658112 183658112 T C TENM3 Missense_Mutation p.V1040A 0.38 deleterious(0) possibly_damaging(0.539) TCGA-E7-A85H-01 4 184240734 184240734 G T CLDN22 Missense_Mutation p.T213K 0.06 tolerated(0.93) benign(0.062) TCGA-E7-A85H-01 4 23803352 23803352 C A PPARGC1A Splice_Site p.X765_splice 0.29 TCGA-E7-A85H-01 4 27009301 27009301 G A STIM2 Silent p.Q376Q 0.39 TCGA-E7-A85H-01 4 39460102 39460102 T G RPL9 5'UTR 0.77 TCGA-E7-A85H-01 4 47809062 47809062 G T CORIN Silent p.V22V 0.34 TCGA-E7-A85H-01 4 55946203 55946203 G A KDR Missense_Mutation p.L1326F 0.17 deleterious(0) probably_damaging(0.982) TCGA-E7-A85H-01 4 57871779 57871779 A T POLR2B Missense_Mutation p.R371W 0.53 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 4 62903510 62903510 G A LPHN3 Missense_Mutation p.S1150N 0.05 deleterious(0.02) benign(0.141) TCGA-E7-A85H-01 4 68436864 68436864 G T STAP1 Missense_Mutation p.K61N 0.19 deleterious(0.01) benign(0.28) TCGA-E7-A85H-01 4 74272446 74272446 G T ALB Missense_Mutation p.D80Y 0.16 deleterious(0.02) probably_damaging(0.985) TCGA-E7-A85H-01 4 74447995 74447995 T C RASSF6 Missense_Mutation p.I226V 0.25 deleterious(0) benign(0.071) TCGA-E7-A85H-01 4 77661644 77661644 A G SHROOM3 Missense_Mutation p.Q773R 0.39 tolerated(0.1) benign(0.261) TCGA-E7-A85H-01 4 861048 861048 C T GAK Silent p.L856L 0.47 TCGA-E7-A85H-01 5 109155380 109155380 G C MAN2A1 Missense_Mutation p.R707P 0.21 tolerated(0.33) benign(0.003) TCGA-E7-A85H-01 5 110097363 110097363 G T SLC25A46 Nonsense_Mutation p.E380* 0.50 TCGA-E7-A85H-01 5 132096493 132096495 CTT - SEPT8 Splice_Site p.X429_splice 0.18 TCGA-E7-A85H-01 5 134143524 134143524 C G DDX46 Missense_Mutation p.R681G 0.25 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 5 137278656 137278656 C T FAM13B Silent p.Q810Q 0.59 TCGA-E7-A85H-01 5 13776783 13776783 A T DNAH5 Missense_Mutation p.D3046E 0.18 possibly_damaging(0.739) TCGA-E7-A85H-01 5 140262659 140262659 C G PCDHA13 Missense_Mutation p.P269R 0.42 tolerated_low_confidence(0.31) benign(0.007) TCGA-E7-A85H-01 5 140625549 140625549 G A PCDHB15 Missense_Mutation p.E135K 0.22 deleterious_low_confidence(0.03) benign(0.006) TCGA-E7-A85H-01 5 140740854 140740854 C T PCDHGB2 Silent p.C384C 0.26 TCGA-E7-A85H-01 5 14293231 14293232 - ATGA TRIO Frame_Shift_Ins p.C391Efs*50 0.10 TCGA-E7-A85H-01 5 145883513 145883513 G A TCERG1 Missense_Mutation p.E892K 0.65 deleterious(0.04) unknown(0) TCGA-E7-A85H-01 5 14602375 14602375 G T FAM105A Silent p.V144V 0.28 TCGA-E7-A85H-01 5 147820706 147820706 A G FBXO38 Silent p.P1023P 0.46 TCGA-E7-A85H-01 5 150527458 150527458 G A ANXA6 Missense_Mutation p.A2V 0.17 deleterious(0.01) benign(0.02) TCGA-E7-A85H-01 5 150527459 150527459 C A ANXA6 Missense_Mutation p.A2S 0.17 tolerated(0.41) benign(0.001) TCGA-E7-A85H-01 5 150900942 150900942 G A FAT2 Missense_Mutation p.H3738Y 0.08 benign(0.055) TCGA-E7-A85H-01 5 150946025 150946025 C A FAT2 Missense_Mutation p.G823V 0.30 possibly_damaging(0.735) TCGA-E7-A85H-01 5 151208511 151208511 G C GLRA1 Missense_Mutation p.R344G 0.18 deleterious(0.01) benign(0.44) TCGA-E7-A85H-01 5 156522343 156522343 A G HAVCR2 Missense_Mutation p.L217P 0.60 deleterious(0) probably_damaging(0.976) TCGA-E7-A85H-01 5 167655096 167655096 G C TENM2 Missense_Mutation p.Q1827H 0.15 deleterious(0) probably_damaging(0.95) TCGA-E7-A85H-01 5 167674846 167674846 G A TENM2 Missense_Mutation p.R2301H 0.80 tolerated(0.2) benign(0.052) TCGA-E7-A85H-01 5 171532705 171532716 CAGGGCTATCTT - STK10 In_Frame_Del p.K272_L275del 0.14 TCGA-E7-A85H-01 5 175111304 175111304 C T HRH2 Silent p.A356A 0.16 TCGA-E7-A85H-01 5 175956008 175956008 C T RNF44 3'UTR 0.74 TCGA-E7-A85H-01 5 179249887 179249887 A G SQSTM1 Intron 0.23 TCGA-E7-A85H-01 5 23526878 23526878 T C PRDM9 Missense_Mutation p.F561L 0.33 deleterious(0.02) possibly_damaging(0.725) TCGA-E7-A85H-01 5 34824208 34824208 T A RAI14 Missense_Mutation p.L757H 0.31 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 5 34936327 34936327 G A DNAJC21 Missense_Mutation p.D132N 0.24 deleterious(0.01) benign(0.026) TCGA-E7-A85H-01 5 40909601 40909601 G A C7 5'UTR 0.69 TCGA-E7-A85H-01 5 45396625 45396625 A G HCN1 Missense_Mutation p.L400P 0.39 deleterious(0) probably_damaging(0.997) TCGA-E7-A85H-01 5 55407589 55407589 G - ANKRD55 Frame_Shift_Del p.P329Lfs*119 0.19 TCGA-E7-A85H-01 5 61802167 61802167 G C IPO11 Missense_Mutation p.E629Q 0.15 deleterious(0) probably_damaging(0.976) TCGA-E7-A85H-01 5 65346752 65346752 C T ERBB2IP Missense_Mutation p.S682F 0.35 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-E7-A85H-01 5 74035894 74035894 C G GFM2 Silent p.L333L 0.16 TCGA-E7-A85H-01 5 74325346 74325346 T C GCNT4 Missense_Mutation p.K173E 0.40 tolerated(0.11) benign(0.276) TCGA-E7-A85H-01 5 74677903 74677903 C T COL4A3BP Splice_Site p.X625_splice 0.17 TCGA-E7-A85H-01 6 107390776 107390776 T G BEND3 Missense_Mutation p.E540A 0.31 tolerated(0.3) benign(0.016) TCGA-E7-A85H-01 6 109962787 109962787 T G AK9 Silent p.L289L 0.25 TCGA-E7-A85H-01 6 111345493 111345493 T A RPF2 Missense_Mutation p.L235H 0.55 deleterious(0) probably_damaging(0.966) TCGA-E7-A85H-01 6 116980037 116980037 G A ZUFSP Nonsense_Mutation p.Q241* 0.55 TCGA-E7-A85H-01 6 117859920 117859920 G C DCBLD1 Missense_Mutation p.A300P 0.54 deleterious(0) possibly_damaging(0.82) TCGA-E7-A85H-01 6 118475710 118475710 A G SLC35F1 Silent p.T92T 0.51 TCGA-E7-A85H-01 6 119295739 119295739 C A FAM184A Missense_Mutation p.R923S 0.20 deleterious(0) probably_damaging(0.939) TCGA-E7-A85H-01 6 123384937 123384937 A T CLVS2 3'UTR 0.30 TCGA-E7-A85H-01 6 125139601 125139601 C T NKAIN2 Nonsense_Mutation p.Q202* 0.45 TCGA-E7-A85H-01 6 129828766 129828766 G C LAMA2 Missense_Mutation p.G2946R 0.22 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 6 137814777 137814777 G A OLIG3 Silent p.S177S 0.33 TCGA-E7-A85H-01 6 142487421 142487421 C G VTA1 Missense_Mutation p.R57G 0.05 deleterious(0.02) probably_damaging(0.991) TCGA-E7-A85H-01 6 142539746 142539746 A C VTA1 Missense_Mutation p.K297T 0.60 deleterious(0) probably_damaging(0.998) TCGA-E7-A85H-01 6 143825324 143825324 C T FUCA2 Missense_Mutation p.D160N 0.49 deleterious(0.03) probably_damaging(0.954) TCGA-E7-A85H-01 6 149901756 149901756 G T GINM1 Missense_Mutation p.S205I 0.35 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 6 160510169 160510169 C T IGF2R Silent p.F2117F 0.13 TCGA-E7-A85H-01 6 163149236 163149236 C A PACRG 5'UTR 0.28 TCGA-E7-A85H-01 6 24358114 24358114 G A KAAG1 Missense_Mutation p.E83K 0.25 tolerated_low_confidence(0.37) benign(0) TCGA-E7-A85H-01 6 24651138 24651138 C A TDP2 Missense_Mutation p.A323S 0.13 tolerated(0.11) benign(0.138) TCGA-E7-A85H-01 6 26022120 26022125 ACCTAT - HIST1H4A In_Frame_Del p.Y73_T74del 0.27 TCGA-E7-A85H-01 6 29596861 29596861 C G GABBR1 Intron 0.25 TCGA-E7-A85H-01 6 29640712 29640713 AG T ZFP57 Frame_Shift_Del p.T392Nfs*86 0.29 TCGA-E7-A85H-01 6 31627692 31627692 A C C6orf47 Silent p.P11P 0.25 TCGA-E7-A85H-01 6 32629870 32629870 G - HLA-DQB1 Frame_Shift_Del p.I180Lfs*12 0.23 TCGA-E7-A85H-01 6 32975956 32975956 T A HLA-DOA Missense_Mutation p.E55D 0.40 tolerated(1) benign(0.094) TCGA-E7-A85H-01 6 33246010 33246010 T A B3GALT4 Missense_Mutation p.S272T 0.22 tolerated(0.13) possibly_damaging(0.455) TCGA-E7-A85H-01 6 3850869 3850869 G A FAM50B Missense_Mutation p.R275H 0.31 deleterious(0) probably_damaging(0.955) TCGA-E7-A85H-01 6 42980059 42980060 - AATA MEA1 3'UTR 0.33 TCGA-E7-A85H-01 6 44217224 44217224 G A HSP90AB1 Silent p.L86L 0.49 TCGA-E7-A85H-01 6 83843994 83843994 G A DOPEY1 Missense_Mutation p.R953H 0.53 deleterious(0.01) possibly_damaging(0.77) TCGA-E7-A85H-01 6 94120437 94120437 C A EPHA7 Missense_Mutation p.C205F 0.47 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 7 100200026 100200026 A G PCOLCE 5'UTR 0.09 TCGA-E7-A85H-01 7 100732141 100732141 C T TRIM56 Silent p.F516F 0.66 TCGA-E7-A85H-01 7 105909004 105909004 C T NAMPT Missense_Mutation p.G217R 0.61 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 7 117359624 117359624 G C CTTNBP2 Missense_Mutation p.D1526E 0.24 tolerated(0.09) benign(0.266) TCGA-E7-A85H-01 7 120991195 120991195 A T FAM3C Splice_Site p.X198_splice 0.25 TCGA-E7-A85H-01 7 129666041 129666041 G C ZC3HC1 Missense_Mutation p.H245D 0.25 deleterious(0.02) benign(0.104) TCGA-E7-A85H-01 7 135384182 135384182 C G SLC13A4 Missense_Mutation p.A276P 0.18 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 7 137570248 137570248 C T CREB3L2 Silent p.R348R 0.35 TCGA-E7-A85H-01 7 138602347 138602347 A G KIAA1549 Silent p.S675S 0.37 TCGA-E7-A85H-01 7 138602348 138602348 G A KIAA1549 Missense_Mutation p.S675F 0.36 deleterious(0.02) benign(0.035) TCGA-E7-A85H-01 7 139257719 139257719 C G HIPK2 Missense_Mutation p.G1184A 0.13 tolerated(0.17) probably_damaging(0.998) TCGA-E7-A85H-01 7 144150487 144150487 T A TPK1 3'UTR 0.32 TCGA-E7-A85H-01 7 147336399 147336399 G A CNTNAP2 Splice_Site p.X700_splice 0.33 TCGA-E7-A85H-01 7 150784083 150784083 C T AGAP3 Silent p.A85A 0.29 TCGA-E7-A85H-01 7 22532994 22532994 G C STEAP1B Nonsense_Mutation p.Y182* 0.22 TCGA-E7-A85H-01 7 2275018 2275018 T G FTSJ2 Silent p.T160T 0.69 TCGA-E7-A85H-01 7 27168780 27168780 C T HOXA4 3'UTR 0.15 TCGA-E7-A85H-01 7 2770942 2770953 CGTCTCTTCCTG - GNA12 In_Frame_Del p.D336_R340delinsE 0.53 TCGA-E7-A85H-01 7 39500223 39500223 C T POU6F2 Missense_Mutation p.R494W 0.29 deleterious(0) unknown(0) TCGA-E7-A85H-01 7 40027399 40027399 G A CDK13 Silent p.A471A 0.29 TCGA-E7-A85H-01 7 44524827 44524827 T C NUDCD3 Silent p.E83E 0.19 TCGA-E7-A85H-01 7 44799028 44799028 C G ZMIZ2 Missense_Mutation p.S321C 0.32 deleterious(0) benign(0.443) TCGA-E7-A85H-01 7 45930260 45930260 A G IGFBP1 Missense_Mutation p.I155V 0.58 tolerated(0.25) benign(0.047) TCGA-E7-A85H-01 7 62752626 62752626 C G ZNF733P RNA 0.06 TCGA-E7-A85H-01 7 62809620 62809620 C T AC006455.1 5'UTR 0.35 TCGA-E7-A85H-01 7 66774703 66774703 G A STAG3L4 Splice_Site 0.12 TCGA-E7-A85H-01 7 71175752 71175752 C G WBSCR17 Missense_Mutation p.R503G 0.31 tolerated(0.12) possibly_damaging(0.801) TCGA-E7-A85H-01 7 73602031 73602031 T G EIF4H Silent p.P50P 0.29 TCGA-E7-A85H-01 7 79846722 79846722 C G GNAI1 Silent p.A326A 0.18 TCGA-E7-A85H-01 7 80418628 80418628 C G SEMA3C Missense_Mutation p.G450R 0.27 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 7 82544282 82544282 G T PCLO Silent p.T4340T 0.22 TCGA-E7-A85H-01 7 92462443 92462443 C T CDK6 Silent p.L65L 0.38 TCGA-E7-A85H-01 7 99425711 99425711 A T CYP3A43 5'Flank 0.23 TCGA-E7-A85H-01 7 99690971 99690971 G C MCM7 Missense_Mutation p.I634M 0.15 tolerated(0.27) benign(0.042) TCGA-E7-A85H-01 8 101276292 101276292 T C RNF19A Missense_Mutation p.I480V 0.07 tolerated(0.45) benign(0.004) TCGA-E7-A85H-01 8 10465361 10465361 C T RP1L1 Missense_Mutation p.E2083K 0.27 unknown(0) TCGA-E7-A85H-01 8 105441905 105441905 A G DPYS Missense_Mutation p.I273T 0.20 tolerated(0.16) probably_damaging(1) TCGA-E7-A85H-01 8 110346145 110346145 C T NUDCD1 Missense_Mutation p.C32Y 0.27 deleterious(0.01) benign(0.003) TCGA-E7-A85H-01 8 114290834 114290834 C A CSMD3 Missense_Mutation p.K167N 0.09 tolerated(0.29) possibly_damaging(0.585) TCGA-E7-A85H-01 8 119936563 119936563 T C TNFRSF11B 3'UTR 0.22 TCGA-E7-A85H-01 8 119936564 119936564 C A TNFRSF11B 3'UTR 0.22 TCGA-E7-A85H-01 8 123966145 123966145 G C ZHX2 Missense_Mutation p.G799R 0.53 deleterious(0.01) probably_damaging(0.939) TCGA-E7-A85H-01 8 124357303 124357303 G C ATAD2 Missense_Mutation p.R847G 0.36 tolerated(0.08) benign(0.008) TCGA-E7-A85H-01 8 124392875 124392875 G T ATAD2 Missense_Mutation p.R72S 0.22 deleterious_low_confidence(0.02) benign(0.123) TCGA-E7-A85H-01 8 126163434 126163434 G T NSMCE2 Missense_Mutation p.S60I 0.15 deleterious(0.02) possibly_damaging(0.798) TCGA-E7-A85H-01 8 135669838 135669838 T C ZFAT Silent p.T54T 0.24 TCGA-E7-A85H-01 8 13947906 13947906 G T SGCZ 3'UTR 0.79 TCGA-E7-A85H-01 8 145947939 145947939 C T ZNF251 Missense_Mutation p.R369K 0.09 tolerated(0.58) benign(0.246) TCGA-E7-A85H-01 8 27255210 27255210 G T PTK2B Missense_Mutation p.D37Y 0.54 deleterious(0) possibly_damaging(0.713) TCGA-E7-A85H-01 8 38369918 38369918 C G C8orf86 Missense_Mutation p.C220S 0.05 deleterious_low_confidence(0) benign(0.291) TCGA-E7-A85H-01 8 38959385 38959385 A G ADAM9 Missense_Mutation p.I768V 0.04 tolerated(1) benign(0) TCGA-E7-A85H-01 8 39128403 39128403 C T ADAM32 Missense_Mutation p.S724L 0.19 tolerated(0.1) probably_damaging(0.949) TCGA-E7-A85H-01 8 39502894 39502894 T C ADAM18 Missense_Mutation p.I316T 0.26 deleterious(0.04) benign(0.175) TCGA-E7-A85H-01 8 42012156 42012156 G A AP3M2 5'UTR 0.08 TCGA-E7-A85H-01 8 42403804 42403804 A G SMIM19 Missense_Mutation p.K47R 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-E7-A85H-01 8 42694417 42694417 G A THAP1 Missense_Mutation p.P60L 0.26 tolerated(0.28) benign(0.089) TCGA-E7-A85H-01 8 48794547 48794547 C T PRKDC Missense_Mutation p.D1629N 0.52 benign(0.013) TCGA-E7-A85H-01 8 52744034 52744034 C T PCMTD1 Missense_Mutation p.D226N 0.26 deleterious(0.02) benign(0.043) TCGA-E7-A85H-01 8 82715390 82715390 T C SNX16 Missense_Mutation p.E252G 0.21 tolerated(0.06) benign(0.371) TCGA-E7-A85H-01 8 88297007 88297007 T A CNBD1 Silent p.L291L 0.23 TCGA-E7-A85H-01 8 91072500 91072500 A G CALB1 Silent p.N229N 0.56 TCGA-E7-A85H-01 9 100693374 100693374 C T HEMGN Silent p.L101L 0.26 TCGA-E7-A85H-01 9 106880632 106880632 G C SMC2 Missense_Mutation p.D658H 0.05 deleterious(0) probably_damaging(0.978) TCGA-E7-A85H-01 9 107576709 107576709 T C ABCA1 Silent p.S1262S 0.20 TCGA-E7-A85H-01 9 111701853 111701853 G A FAM206A Missense_Mutation p.V145I 0.68 tolerated(0.51) benign(0.359) TCGA-E7-A85H-01 9 123586847 123586847 T C PSMD5 Missense_Mutation p.M311V 0.62 deleterious(0.01) benign(0.026) TCGA-E7-A85H-01 9 130478542 130478542 A C PTRH1 5'UTR 0.59 TCGA-E7-A85H-01 9 131019756 131019756 G A GOLGA2 Missense_Mutation p.R896C 0.27 deleterious(0.03) probably_damaging(0.979) TCGA-E7-A85H-01 9 136341446 136341446 C T SLC2A6 Missense_Mutation p.E159K 0.71 deleterious(0) probably_damaging(1) TCGA-E7-A85H-01 9 139232303 139232303 C T GPSM1 Missense_Mutation p.R235C 0.33 deleterious(0) probably_damaging(0.999) TCGA-E7-A85H-01 9 140327507 140327507 A G NOXA1 Silent p.K277K 0.18 TCGA-E7-A85H-01 9 140344413 140344413 T C NSMF Missense_Mutation p.M461V 0.05 deleterious(0) benign(0.438) TCGA-E7-A85H-01 9 21333785 21333785 A G KLHL9 Silent p.Y358Y 0.21 TCGA-E7-A85H-01 9 23731039 23731039 A C ELAVL2 Missense_Mutation p.L105R 0.41 deleterious(0) probably_damaging(0.95) TCGA-E7-A85H-01 9 34512190 34512190 C T DNAI1 Silent p.L465L 0.33 TCGA-E7-A85H-01 9 35717692 35717692 G A TLN1 Missense_Mutation p.S696L 0.15 tolerated(0.17) benign(0.006) TCGA-E7-A85H-01 9 39118134 39118134 A G CNTNAP3 Missense_Mutation p.Y735H 0.36 tolerated(0.57) benign(0.033) TCGA-E7-A85H-01 9 72130928 72130928 T C APBA1 Missense_Mutation p.D400G 0.54 tolerated(0.13) benign(0.001) TCGA-E7-A85H-01 9 84248994 84248994 G T TLE1 Intron 0.63 TCGA-E7-A85H-01 X 100240783 100240783 T C ARL13A Silent p.Y86Y 0.80 TCGA-E7-A85H-01 X 102508663 102508663 A G TCEAL8 Missense_Mutation p.L82P 0.72 deleterious(0) probably_damaging(0.938) TCGA-E7-A85H-01 X 118968908 118968908 C T UPF3B Missense_Mutation p.G462E 0.71 tolerated(0.08) benign(0.011) TCGA-E7-A85H-01 X 123020109 123020109 G T XIAP Missense_Mutation p.Q199H 0.69 deleterious(0.05) possibly_damaging(0.903) TCGA-E7-A85H-01 X 12903775 12903775 G T TLR7 Missense_Mutation p.D50Y 0.67 deleterious(0) probably_damaging(0.986) TCGA-E7-A85H-01 X 129203614 129203614 C G ELF4 Missense_Mutation p.G283A 0.88 deleterious(0.03) possibly_damaging(0.887) TCGA-E7-A85H-01 X 13337355 13337355 A C ATXN3L Silent p.L233L 0.23 TCGA-E7-A85H-01 X 150912130 150912130 C A CNGA2 Missense_Mutation p.F385L 0.24 deleterious(0) probably_damaging(0.993) TCGA-E7-A85H-01 X 153670014 153670014 G A GDI1 Silent p.P288P 0.29 TCGA-E7-A85H-01 X 1546825 1546830 GTCCGC CTTCGAA ASMTL Frame_Shift_Ins p.A232Ffs*9 0.32 TCGA-E7-A85H-01 X 2826824 2826824 T C ARSD Missense_Mutation p.H453R 0.77 deleterious(0.01) probably_damaging(0.989) TCGA-E7-A85H-01 X 44969390 44969400 TGCCAAGATTG - KDM6A Frame_Shift_Del p.Q1359Tfs*26 0.77 TCGA-E7-A85H-01 X 48666705 48666705 A G HDAC6 Missense_Mutation p.T260A 0.80 deleterious(0.03) possibly_damaging(0.794) TCGA-E7-A85H-01 X 48759277 48759277 G C PQBP1 Missense_Mutation p.V84L 0.40 tolerated(0.16) benign(0.028) TCGA-E7-A85H-01 X 55250422 55250422 G A PAGE5 Missense_Mutation p.E127K 0.13 deleterious(0.01) possibly_damaging(0.513) TCGA-E7-A85H-01 X 77160727 77160727 G A COX7B Missense_Mutation p.R71K 0.73 tolerated(0.16) benign(0.361) TCGA-E7-A8O7-01 11 120291536 120291536 G T ARHGEF12 Missense_Mutation p.V92F 0.27 deleterious(0) probably_damaging(1) TCGA-E7-A8O7-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.40 deleterious(0) possibly_damaging(0.476) TCGA-E7-A8O7-01 12 123064488 123064488 G C KNTC1 Missense_Mutation p.V960L 0.21 deleterious(0.03) benign(0.06) TCGA-E7-A8O7-01 12 124332603 124332603 C T DNAH10 Silent p.L1852L 0.41 TCGA-E7-A8O7-01 12 95453707 95453707 G A NR2C1 Silent p.C113C 0.26 TCGA-E7-A8O7-01 16 85106557 85106557 G A KIAA0513 Silent p.E152E 0.33 TCGA-E7-A8O7-01 16 89590521 89590521 G A SPG7 Missense_Mutation p.G162R 0.46 tolerated(0.14) probably_damaging(0.91) TCGA-E7-A8O7-01 17 2996218 2996218 G A OR1D2 Missense_Mutation p.R25W 0.09 deleterious(0.01) benign(0.003) TCGA-E7-A8O7-01 17 5072318 5072318 C T USP6 Missense_Mutation p.S1162L 0.28 tolerated_low_confidence(0.07) benign(0.085) TCGA-E7-A8O7-01 18 2890627 2890628 - G EMILIN2 Frame_Shift_Ins p.V170Gfs*31 0.09 TCGA-E7-A8O7-01 18 40853744 40853744 G - SYT4 Frame_Shift_Del p.P217Qfs*27 0.19 TCGA-E7-A8O7-01 19 39876843 39876844 - CTT PAF1 In_Frame_Ins p.E461_D462insK 0.44 TCGA-E7-A8O7-01 19 41269513 41269513 C G SNRPA Missense_Mutation p.H208D 0.47 tolerated(0.1) possibly_damaging(0.507) TCGA-E7-A8O7-01 19 45805846 45805846 G A MARK4 Missense_Mutation p.E713K 0.42 deleterious(0) benign(0.197) TCGA-E7-A8O7-01 19 50172187 50172187 C T BCL2L12 Silent p.P194P 0.37 TCGA-E7-A8O7-01 1 1459748 1459748 C G ATAD3A Silent p.L443L 0.39 TCGA-E7-A8O7-01 1 150788737 150788737 G A ARNT Nonsense_Mutation p.Q650* 0.43 TCGA-E7-A8O7-01 1 17593247 17593247 G A PADI3 Missense_Mutation p.G148S 0.25 deleterious(0.02) benign(0.067) TCGA-E7-A8O7-01 1 211923190 211923190 T C LPGAT1 3'UTR 0.07 TCGA-E7-A8O7-01 1 237798253 237798253 T C RYR2 Silent p.N2251N 0.40 TCGA-E7-A8O7-01 1 31769595 31769595 T C SNRNP40 Missense_Mutation p.I2V 0.47 tolerated(0.29) benign(0.005) TCGA-E7-A8O7-01 1 52912303 52912303 C G ZCCHC11 Missense_Mutation p.D1158H 0.34 deleterious(0) probably_damaging(0.959) TCGA-E7-A8O7-01 20 30804895 30804895 G C POFUT1 Intron 0.43 TCGA-E7-A8O7-01 22 22293875 22293875 G - PPM1F Intron 0.42 TCGA-E7-A8O7-01 2 224831686 224831686 C T MRPL44 Missense_Mutation p.R312W 0.53 deleterious(0) possibly_damaging(0.828) TCGA-E7-A8O7-01 2 33824251 33824251 G T FAM98A Nonsense_Mutation p.S13* 0.44 TCGA-E7-A8O7-01 2 88082711 88082711 C G RGPD2 Missense_Mutation p.D1278H 0.44 deleterious(0) probably_damaging(0.934) TCGA-E7-A8O7-01 3 51968734 51968734 G A RRP9 Missense_Mutation p.H365Y 0.32 deleterious(0) probably_damaging(0.987) TCGA-E7-A8O7-01 3 52696236 52696236 T G PBRM1 Silent p.T147T 0.60 TCGA-E7-A8O7-01 4 104081791 104081791 C T CENPE Silent p.L759L 0.42 TCGA-E7-A8O7-01 4 48088640 48088640 C A TXK Missense_Mutation p.D267Y 0.30 deleterious(0.04) possibly_damaging(0.581) TCGA-E7-A8O7-01 5 149574453 149574453 C T SLC6A7 Nonsense_Mutation p.R66* 0.29 TCGA-E7-A8O7-01 5 45262395 45262395 C T HCN1 Silent p.V767V 0.34 TCGA-E7-A8O7-01 5 52856493 52856493 A G NDUFS4 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-E7-A8O7-01 5 63256928 63256928 G C HTR1A Missense_Mutation p.P207A 0.37 deleterious(0) probably_damaging(1) TCGA-E7-A8O7-01 6 100391007 100391007 G T MCHR2 Silent p.L135L 0.46 TCGA-E7-A8O7-01 7 100388619 100388619 C T ZAN Silent p.Y2470Y 0.23 TCGA-E7-A8O7-01 7 126410078 126410078 C A GRM8 Nonsense_Mutation p.G400* 0.38 TCGA-E7-A8O7-01 7 146818127 146818127 C T CNTNAP2 Silent p.L271L 0.11 TCGA-E7-A8O7-01 8 113933892 113933892 A T CSMD3 Missense_Mutation p.F533I 0.38 tolerated(0.33) probably_damaging(0.964) TCGA-E7-A8O7-01 8 145616124 145616124 G A ADCK5 Silent p.G137G 0.38 TCGA-E7-A8O7-01 X 44949096 44949096 G T KDM6A Missense_Mutation p.W1219C 0.14 deleterious(0) probably_damaging(0.991) TCGA-E7-A8O8-01 10 118306870 118306870 G T PNLIP Silent p.T37T 0.38 TCGA-E7-A8O8-01 10 127429137 127429137 A G EDRF1 Missense_Mutation p.Y696C 0.48 deleterious(0) probably_damaging(0.98) TCGA-E7-A8O8-01 10 134906683 134906683 A T GPR123 Intron 0.40 TCGA-E7-A8O8-01 10 55663098 55663098 C T PCDH15 Missense_Mutation p.D1136N 0.44 deleterious(0) probably_damaging(0.999) TCGA-E7-A8O8-01 10 63852459 63852459 A T ARID5B Silent p.P1079P 0.55 TCGA-E7-A8O8-01 10 70726822 70726822 G T DDX21 Missense_Mutation p.R318L 0.07 deleterious(0) probably_damaging(0.946) TCGA-E7-A8O8-01 10 73122286 73122286 G C SLC29A3 Missense_Mutation p.G450A 0.48 deleterious(0.04) probably_damaging(0.935) TCGA-E7-A8O8-01 10 8115861 8115871 CTGAGCCACAT - GATA3 Frame_Shift_Del p.S405Afs*99 0.30 TCGA-E7-A8O8-01 10 85961670 85961670 C T CDHR1 Silent p.V211V 0.43 TCGA-E7-A8O8-01 10 90774009 90774009 A T FAS Silent p.T270T 0.59 TCGA-E7-A8O8-01 10 95109690 95109690 G - MYOF Frame_Shift_Del p.Q1320Rfs*23 0.30 TCGA-E7-A8O8-01 11 105483085 105483085 G T GRIA4 Silent p.A57A 0.13 TCGA-E7-A8O8-01 11 108154953 108154953 G C ATM Splice_Site p.X1249_splice 0.76 TCGA-E7-A8O8-01 11 108175528 108175528 C T ATM Nonsense_Mutation p.R1875* 0.44 TCGA-E7-A8O8-01 11 122647799 122647799 C T UBASH3B Missense_Mutation p.R95C 0.74 tolerated(0.57) benign(0.091) TCGA-E7-A8O8-01 11 123886716 123886716 C T OR10G4 Silent p.T145T 0.56 TCGA-E7-A8O8-01 11 14808154 14808154 C G PDE3B Missense_Mutation p.L401V 0.21 tolerated(0.19) benign(0.271) TCGA-E7-A8O8-01 11 16071437 16071437 T A SOX6 Silent p.T433T 0.30 TCGA-E7-A8O8-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.66 deleterious(0) possibly_damaging(0.476) TCGA-E7-A8O8-01 11 61106814 61106814 G A DAK Silent p.P131P 0.28 TCGA-E7-A8O8-01 11 64695560 64695560 G A PPP2R5B Missense_Mutation p.R174H 0.10 deleterious(0.01) benign(0.378) TCGA-E7-A8O8-01 11 67020273 67020273 C T KDM2A Silent p.L959L 0.30 TCGA-E7-A8O8-01 11 69462846 69462846 C T CCND1 Missense_Mutation p.P220L 0.15 tolerated(0.39) benign(0) TCGA-E7-A8O8-01 11 71717093 71717093 C T NUMA1 Missense_Mutation p.G1894R 0.25 probably_damaging(1) TCGA-E7-A8O8-01 12 122691591 122691591 T A B3GNT4 Missense_Mutation p.S265T 0.57 tolerated(0.27) benign(0.04) TCGA-E7-A8O8-01 12 130184387 130184387 G A TMEM132D Silent p.S312S 0.50 TCGA-E7-A8O8-01 12 19511171 19511171 A G PLEKHA5 Missense_Mutation p.R1050G 0.54 deleterious(0) probably_damaging(0.997) TCGA-E7-A8O8-01 12 25380282 25380282 G C KRAS Missense_Mutation p.A59G 0.49 deleterious(0.01) benign(0.353) TCGA-E7-A8O8-01 12 40692126 40692126 A G LRRK2 Missense_Mutation p.I1060V 0.46 tolerated(0.14) benign(0.007) TCGA-E7-A8O8-01 12 53686643 53686643 G A ESPL1 Missense_Mutation p.R2017Q 0.06 tolerated(0.14) benign(0.126) TCGA-E7-A8O8-01 12 9349631 9349631 C A PZP Missense_Mutation p.V282F 0.37 tolerated(0.35) benign(0) TCGA-E7-A8O8-01 13 108861173 108861173 C T LIG4 Missense_Mutation p.R815H 0.28 tolerated(0.15) benign(0) TCGA-E7-A8O8-01 13 32745180 32745201 CATATTGCACAAAATTCTCTTC - FRY Frame_Shift_Del p.H642Rfs*26 0.18 TCGA-E7-A8O8-01 13 39433649 39433649 G A FREM2 Missense_Mutation p.A2481T 0.38 tolerated(0.08) possibly_damaging(0.619) TCGA-E7-A8O8-01 14 103934397 103934397 A T MARK3 Missense_Mutation p.S380C 0.51 deleterious(0.02) probably_damaging(0.91) TCGA-E7-A8O8-01 14 19990626 19990626 T G POTEM Missense_Mutation p.E483D 0.13 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-E7-A8O8-01 14 37739718 37739718 G A MIPOL1 Missense_Mutation p.E161K 0.23 deleterious(0) probably_damaging(0.944) TCGA-E7-A8O8-01 14 70991627 70991627 G C ADAM20 5'UTR 0.51 TCGA-E7-A8O8-01 15 23890337 23890337 C T MAGEL2 Silent p.V248V 0.04 TCGA-E7-A8O8-01 15 63978671 63978671 C A HERC1 Nonsense_Mutation p.E2038* 0.11 TCGA-E7-A8O8-01 15 63978672 63978672 C A HERC1 Silent p.P2037P 0.11 TCGA-E7-A8O8-01 15 65043782 65043782 T A RBPMS2 Missense_Mutation p.Y48F 0.28 deleterious(0) probably_damaging(0.994) TCGA-E7-A8O8-01 15 65792945 65792945 G A DPP8 Missense_Mutation p.T198M 0.34 tolerated(0.48) possibly_damaging(0.598) TCGA-E7-A8O8-01 15 75702212 75702212 G A SIN3A Missense_Mutation p.R428C 0.12 deleterious(0) possibly_damaging(0.84) TCGA-E7-A8O8-01 16 1270973 1270973 T C CACNA1H Silent p.G2347G 0.33 TCGA-E7-A8O8-01 16 21170669 21170669 C T DNAH3 Missense_Mutation p.E32K 0.60 tolerated_low_confidence(0.21) benign(0.001) TCGA-E7-A8O8-01 16 24366243 24366243 C T CACNG3 Missense_Mutation p.R129C 0.64 deleterious(0.01) possibly_damaging(0.766) TCGA-E7-A8O8-01 16 28995166 28995166 G C SPNS1 Silent p.L460L 0.70 TCGA-E7-A8O8-01 16 29676226 29676226 G A SPN Missense_Mutation p.E393K 0.62 tolerated(0.07) possibly_damaging(0.81) TCGA-E7-A8O8-01 16 49559316 49559316 C G ZNF423 Missense_Mutation p.E1223Q 0.70 tolerated(0.11) benign(0.162) TCGA-E7-A8O8-01 16 5061192 5061192 G A SEC14L5 Missense_Mutation p.D633N 0.42 tolerated(0.09) possibly_damaging(0.801) TCGA-E7-A8O8-01 16 69358225 69358225 T G VPS4A 3'UTR 0.45 TCGA-E7-A8O8-01 16 77387711 77387711 T A ADAMTS18 Silent p.P511P 0.35 TCGA-E7-A8O8-01 17 10351258 10351258 A T MYH4 Missense_Mutation p.D1614E 0.57 tolerated(1) benign(0.042) TCGA-E7-A8O8-01 17 27182093 27182093 C T ERAL1 Missense_Mutation p.S14L 0.53 tolerated_low_confidence(0.21) benign(0) TCGA-E7-A8O8-01 17 40476813 40476813 C T STAT3 Missense_Mutation p.E506K 0.26 tolerated(0.08) possibly_damaging(0.646) TCGA-E7-A8O8-01 17 41107211 41107211 C T AARSD1 Silent p.V275V 0.42 TCGA-E7-A8O8-01 17 41107968 41107968 C T AARSD1 Missense_Mutation p.E229K 0.41 deleterious(0) probably_damaging(0.946) TCGA-E7-A8O8-01 17 56083317 56083317 T A SRSF1 Missense_Mutation p.S133C 0.42 deleterious(0) probably_damaging(0.999) TCGA-E7-A8O8-01 17 63221545 63221545 G A RGS9 Silent p.V611V 0.52 TCGA-E7-A8O8-01 17 73089697 73089697 T G SLC16A5 5'UTR 0.40 TCGA-E7-A8O8-01 17 78317078 78317078 C T RNF213 Nonsense_Mutation p.Q2046* 0.12 TCGA-E7-A8O8-01 19 11027083 11027083 G A CARM1 Missense_Mutation p.G283E 0.93 deleterious(0) probably_damaging(1) TCGA-E7-A8O8-01 19 12060737 12060737 C G ZNF700 Nonsense_Mutation p.S633* 0.95 TCGA-E7-A8O8-01 19 18900044 18900044 G T COMP Nonsense_Mutation p.C151* 0.57 TCGA-E7-A8O8-01 19 40578124 40578124 G A ZNF780A 3'Flank 0.33 TCGA-E7-A8O8-01 19 54377599 54377599 G T MYADM Silent p.R272R 0.30 TCGA-E7-A8O8-01 19 58640694 58640694 A C ZNF329 Silent p.T59T 0.36 TCGA-E7-A8O8-01 19 694872 694872 C T PRSS57 Missense_Mutation p.G60R 0.14 deleterious(0) probably_damaging(1) TCGA-E7-A8O8-01 1 101194720 101194720 A G VCAM1 Missense_Mutation p.D329G 0.48 tolerated(0.19) benign(0.261) TCGA-E7-A8O8-01 1 104162267 104162267 T G AMY2A Missense_Mutation p.I202S 0.41 deleterious(0) possibly_damaging(0.829) TCGA-E7-A8O8-01 1 152193648 152193648 C A HRNR Nonsense_Mutation p.E153* 0.37 TCGA-E7-A8O8-01 1 228596721 228596721 G A TRIM17 Intron 0.23 TCGA-E7-A8O8-01 1 232942047 232942047 C A MAP10 Silent p.S426S 0.07 TCGA-E7-A8O8-01 1 38030624 38030624 C T DNALI1 Intron 0.50 TCGA-E7-A8O8-01 1 51864723 51864723 T C EPS15 Missense_Mutation p.N678S 0.46 tolerated(1) benign(0) TCGA-E7-A8O8-01 1 59147920 59147920 C T MYSM1 Missense_Mutation p.D266N 0.44 tolerated(0.49) benign(0.001) TCGA-E7-A8O8-01 1 70611534 70611534 C G LRRC40 Missense_Mutation p.M586I 0.48 tolerated(0.11) benign(0.002) TCGA-E7-A8O8-01 1 85491891 85491892 - C MCOLN3 Frame_Shift_Ins p.C303Wfs*3 0.16 TCGA-E7-A8O8-01 20 23804725 23804725 A G CST2 Missense_Mutation p.F120L 0.09 deleterious(0) probably_damaging(1) TCGA-E7-A8O8-01 20 42683040 42683040 G A TOX2 Silent p.S251S 0.74 TCGA-E7-A8O8-01 21 38507722 38507722 G C TTC3 Missense_Mutation p.D496H 0.34 deleterious(0) probably_damaging(0.993) TCGA-E7-A8O8-01 21 46875435 46875435 C T COL18A1 5'UTR 0.68 TCGA-E7-A8O8-01 22 39357406 39357406 C A APOBEC3A Silent p.L63L 0.57 TCGA-E7-A8O8-01 22 44342278 44342278 G A PNPLA3 3'UTR 0.50 TCGA-E7-A8O8-01 22 51043869 51043869 C T MAPK8IP2 Silent p.F612F 0.69 TCGA-E7-A8O8-01 2 121742267 121742267 A T GLI2 Missense_Mutation p.Q635L 0.57 tolerated(0.07) benign(0.159) TCGA-E7-A8O8-01 2 152394418 152394418 G A NEB Missense_Mutation p.H7024Y 0.15 probably_damaging(0.999) TCGA-E7-A8O8-01 2 163082042 163082042 T A FAP Missense_Mutation p.Y79F 0.40 tolerated(0.93) benign(0.014) TCGA-E7-A8O8-01 2 1652402 1652402 G C PXDN Nonsense_Mutation p.Y1050* 0.36 TCGA-E7-A8O8-01 2 167145063 167145063 C T SCN9A Missense_Mutation p.V400M 0.41 deleterious(0) probably_damaging(1) TCGA-E7-A8O8-01 2 179414115 179414115 A G TTN Silent p.D30746D 0.55 TCGA-E7-A8O8-01 2 179644052 179644052 A T TTN Silent p.V1289V 0.48 TCGA-E7-A8O8-01 2 182395267 182395267 G A ITGA4 Missense_Mutation p.C852Y 0.11 deleterious(0) probably_damaging(1) TCGA-E7-A8O8-01 2 197710678 197710678 G A PGAP1 Silent p.V738V 0.26 TCGA-E7-A8O8-01 2 198511265 198511265 G A RFTN2 Nonsense_Mutation p.R89* 0.05 TCGA-E7-A8O8-01 2 66796028 66796028 G A MEIS1 Intron 0.55 TCGA-E7-A8O8-01 2 96962276 96962276 T C SNRNP200 Missense_Mutation p.K557E 0.53 tolerated(0.13) benign(0.104) TCGA-E7-A8O8-01 2 99012904 99012904 T C CNGA3 Missense_Mutation p.M424T 0.35 deleterious(0) probably_damaging(0.963) TCGA-E7-A8O8-01 3 101384287 101384287 G A ZBTB11 Nonsense_Mutation p.R382* 0.07 TCGA-E7-A8O8-01 3 10970951 10970951 G A SLC6A11 Missense_Mutation p.G433S 0.73 tolerated(0.25) probably_damaging(1) TCGA-E7-A8O8-01 3 122003781 122003782 CA - CASR Frame_Shift_Del p.H1004Pfs*54 0.56 TCGA-E7-A8O8-01 3 126260814 126260814 C T CHST13 Missense_Mutation p.A140V 0.16 deleterious(0) possibly_damaging(0.561) TCGA-E7-A8O8-01 3 141497304 141497304 T G GRK7 Missense_Mutation p.C60G 0.56 deleterious(0) probably_damaging(1) TCGA-E7-A8O8-01 3 142238547 142238547 T A ATR Missense_Mutation p.H1449L 0.48 tolerated(0.2) possibly_damaging(0.663) TCGA-E7-A8O8-01 3 1445043 1445043 C A CNTN6 Missense_Mutation p.H1010N 0.61 tolerated(0.29) benign(0.001) TCGA-E7-A8O8-01 3 172351146 172351146 C T NCEH1 3'UTR 0.33 TCGA-E7-A8O8-01 3 179051189 179051189 C T ZNF639 Missense_Mutation p.A146V 0.47 tolerated(0.12) possibly_damaging(0.627) TCGA-E7-A8O8-01 3 69151039 69151039 G A ARL6IP5 Missense_Mutation p.V76M 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-E7-A8O8-01 3 98217032 98217032 G T OR5K2 Nonsense_Mutation p.G170* 0.10 TCGA-E7-A8O8-01 4 74283282 74283282 G A ALB Missense_Mutation p.V442M 0.68 tolerated(0.12) possibly_damaging(0.597) TCGA-E7-A8O8-01 4 76489395 76489395 A T C4orf26 Missense_Mutation p.L61F 0.67 tolerated_low_confidence(0.09) possibly_damaging(0.765) TCGA-E7-A8O8-01 4 862389 862389 G C GAK Missense_Mutation p.S778C 0.64 deleterious(0.01) possibly_damaging(0.765) TCGA-E7-A8O8-01 5 140222587 140222587 A T PCDHA8 Missense_Mutation p.N561Y 0.62 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-E7-A8O8-01 5 68463040 68463040 C T CCNB1 5'UTR 0.50 TCGA-E7-A8O8-01 5 81608436 81608436 C T ATP6AP1L Silent p.I46I 0.62 TCGA-E7-A8O8-01 5 83476327 83476327 G - EDIL3 Frame_Shift_Del p.P80Lfs*12 0.37 TCGA-E7-A8O8-01 5 94114847 94114847 C G MCTP1 Missense_Mutation p.D860H 0.13 deleterious(0.05) probably_damaging(0.99) TCGA-E7-A8O8-01 6 168347561 168347561 G A MLLT4 Missense_Mutation p.R1171H 0.27 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-E7-A8O8-01 6 25915819 25915819 G A SLC17A2 Intron 0.19 TCGA-E7-A8O8-01 6 28327390 28327390 A T ZKSCAN3 Silent p.T9T 0.49 TCGA-E7-A8O8-01 6 31934523 31934523 C T SKIV2L Missense_Mutation p.T747M 0.15 deleterious(0) probably_damaging(0.934) TCGA-E7-A8O8-01 6 46135309 46135309 G C ENPP5 Missense_Mutation p.L231V 0.46 tolerated(0.84) benign(0.004) TCGA-E7-A8O8-01 6 46834780 46834780 C T GPR116 Missense_Mutation p.M572I 0.50 tolerated(0.18) benign(0.009) TCGA-E7-A8O8-01 7 103216052 103216052 A C RELN Missense_Mutation p.C1416G 0.47 deleterious(0) benign(0.186) TCGA-E7-A8O8-01 7 105207766 105207766 C T RINT1 3'UTR 0.07 TCGA-E7-A8O8-01 7 117364715 117364715 A T CTTNBP2 Missense_Mutation p.C1445S 0.54 tolerated(0.78) benign(0.003) TCGA-E7-A8O8-01 7 141754659 141754659 A T MGAM Nonsense_Mutation p.K1089* 0.49 TCGA-E7-A8O8-01 7 142008742 142008742 A T TRBV3-1 Missense_Mutation p.E72V 0.43 deleterious(0.05) benign(0.213) TCGA-E7-A8O8-01 7 143657739 143657739 C A OR2F1 Missense_Mutation p.L226I 0.18 tolerated(0.22) benign(0.317) TCGA-E7-A8O8-01 7 151878785 151878785 G A KMT2C Nonsense_Mutation p.Q2054* 0.42 TCGA-E7-A8O8-01 7 21948016 21948018 CTT - CDCA7L In_Frame_Del p.R137del 0.51 TCGA-E7-A8O8-01 7 30963440 30963440 A T AQP1 3'UTR 0.56 TCGA-E7-A8O8-01 7 73183678 73183678 G T CLDN3 3'UTR 0.50 TCGA-E7-A8O8-01 7 99260487 99260487 G T CYP3A5 Missense_Mutation p.Q273K 0.34 deleterious(0.02) probably_damaging(0.956) TCGA-E7-A8O8-01 7 99261634 99261634 G C CYP3A5 Missense_Mutation p.S252C 0.43 tolerated(0.13) benign(0.172) TCGA-E7-A8O8-01 7 99261673 99261673 G C CYP3A5 Missense_Mutation p.S239C 0.49 tolerated(0.16) benign(0.144) TCGA-E7-A8O8-01 7 99262807 99262807 G C CYP3A5 Missense_Mutation p.P218A 0.46 deleterious(0) possibly_damaging(0.781) TCGA-E7-A8O8-01 8 103297947 103297947 T C UBR5 Missense_Mutation p.T1760A 0.04 tolerated(0.35) benign(0.006) TCGA-E7-A8O8-01 8 106814834 106814834 C T ZFPM2 Missense_Mutation p.R842W 0.29 deleterious(0.01) possibly_damaging(0.849) TCGA-E7-A8O8-01 8 13356845 13356845 C T DLC1 Missense_Mutation p.E246K 0.92 deleterious_low_confidence(0.04) benign(0.146) TCGA-E7-A8O8-01 8 146201940 146201940 C T ZNF252P RNA 0.55 TCGA-E7-A8O8-01 8 38110315 38110315 C T DDHD2 Missense_Mutation p.H565Y 0.25 tolerated(0.08) probably_damaging(1) TCGA-E7-A8O8-01 8 38110472 38110472 C T DDHD2 Intron 0.26 TCGA-E7-A8O8-01 8 38110589 38110589 C T DDHD2 Missense_Mutation p.S612L 0.27 tolerated(0.29) benign(0.155) TCGA-E7-A8O8-01 8 38110625 38110625 C T DDHD2 Missense_Mutation p.S624L 0.27 tolerated(0.24) benign(0.008) TCGA-E7-A8O8-01 8 38110631 38110631 C T DDHD2 Missense_Mutation p.S626L 0.24 tolerated(0.31) benign(0.002) TCGA-E7-A8O8-01 8 59359983 59359983 G A UBXN2B Missense_Mutation p.R290H 0.06 deleterious(0.02) possibly_damaging(0.563) TCGA-E7-A8O8-01 9 32633314 32633314 G C TAF1L Missense_Mutation p.P755R 0.40 deleterious(0.01) possibly_damaging(0.688) TCGA-E7-A8O8-01 9 34257191 34257191 G A KIF24 Missense_Mutation p.P805L 0.05 tolerated(0.07) benign(0.005) TCGA-E7-A8O8-01 9 34976173 34976173 G A KIAA1045 Missense_Mutation p.E197K 0.52 deleterious(0.04) benign(0.304) TCGA-E7-A8O8-01 9 35853153 35853153 G T TMEM8B Nonsense_Mutation p.G328* 0.04 TCGA-E7-A8O8-01 9 36923453 36923453 A T PAX5 Missense_Mutation p.L270Q 0.55 deleterious(0.02) benign(0.317) TCGA-E7-A8O8-01 9 731265 731265 G T KANK1 Missense_Mutation p.G1002W 0.18 deleterious(0) probably_damaging(0.999) TCGA-E7-A8O8-01 9 731266 731266 G T KANK1 Missense_Mutation p.G1002V 0.18 deleterious(0) probably_damaging(0.997) TCGA-E7-A8O8-01 X 123179124 123179124 A G STAG2 Missense_Mutation p.I191M 0.95 deleterious(0) probably_damaging(0.982) TCGA-E7-A8O8-01 X 135469994 135469994 G T GPR112 Silent p.T2624T 0.98 TCGA-E7-A8O8-01 X 44942703 44942703 A T KDM6A Splice_Site p.X1095_splice 1.00 TCGA-E7-A8O8-01 X 91133597 91133597 G A PCDH11X Silent p.V786V 0.94 TCGA-E7-A97P-01 10 11963300 11963304 ACGTC - UPF2 Frame_Shift_Del p.R1271Mfs*10 0.14 TCGA-E7-A97P-01 10 124740062 124740062 C G PSTK Missense_Mutation p.L23V 0.25 deleterious(0) possibly_damaging(0.635) TCGA-E7-A97P-01 10 13717008 13717008 T C FRMD4A Missense_Mutation p.K385R 0.15 tolerated(0.29) possibly_damaging(0.5) TCGA-E7-A97P-01 10 16562644 16562644 C T C1QL3 Missense_Mutation p.E141K 0.18 deleterious(0.02) possibly_damaging(0.642) TCGA-E7-A97P-01 10 17730077 17730077 G A STAM Missense_Mutation p.D117N 0.34 tolerated(0.05) benign(0.078) TCGA-E7-A97P-01 10 32561089 32561089 C G EPC1 Missense_Mutation p.V647L 0.20 tolerated(0.26) benign(0.002) TCGA-E7-A97P-01 10 48388319 48388319 C T RBP3 Silent p.E853E 0.22 TCGA-E7-A97P-01 10 54040658 54040658 C G PRKG1 Missense_Mutation p.L505V 0.25 deleterious(0) probably_damaging(0.924) TCGA-E7-A97P-01 10 60549576 60549576 C T BICC1 Silent p.I310I 0.24 TCGA-E7-A97P-01 10 6258109 6258109 G T PFKFB3 Missense_Mutation p.L107F 0.15 probably_damaging(1) TCGA-E7-A97P-01 10 73572631 73572631 G C CDH23 Missense_Mutation p.R966P 0.27 deleterious_low_confidence(0) benign(0.011) TCGA-E7-A97P-01 10 75277120 75277120 G C USP54 Missense_Mutation p.Q1022E 0.32 tolerated_low_confidence(0.11) benign(0.08) TCGA-E7-A97P-01 11 101863539 101863539 C A KIAA1377 Missense_Mutation p.S1092Y 0.22 deleterious(0) probably_damaging(0.982) TCGA-E7-A97P-01 11 111228351 111228351 G A POU2AF1 Missense_Mutation p.T92I 0.28 deleterious(0.04) benign(0.049) TCGA-E7-A97P-01 11 128932222 128932222 G A ARHGAP32 Missense_Mutation p.P292S 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-E7-A97P-01 11 18956411 18956411 C T MRGPRX1 5'UTR 0.17 TCGA-E7-A97P-01 11 30557541 30557541 C G MPPED2 Missense_Mutation p.G104R 0.19 tolerated(0.06) benign(0.005) TCGA-E7-A97P-01 11 34118751 34118751 G A CAPRIN1 Missense_Mutation p.D637N 0.09 deleterious(0) probably_damaging(0.99) TCGA-E7-A97P-01 11 47869415 47869415 T C NUP160 Missense_Mutation p.N100S 0.13 deleterious(0) probably_damaging(0.958) TCGA-E7-A97P-01 11 534289 534289 C T HRAS Missense_Mutation p.G12S 0.11 deleterious(0.02) possibly_damaging(0.525) TCGA-E7-A97P-01 11 55681984 55681984 C A OR5W2 Silent p.V25V 0.36 TCGA-E7-A97P-01 11 5685996 5685996 G C TRIM5 3'UTR 0.19 TCGA-E7-A97P-01 11 6023726 6023726 G A OR56A4 Missense_Mutation p.S218F 0.24 deleterious(0.03) possibly_damaging(0.894) TCGA-E7-A97P-01 11 6129139 6129139 C T OR56B4 Missense_Mutation p.A44V 0.11 deleterious(0.02) benign(0.17) TCGA-E7-A97P-01 11 62376855 62376855 T C EML3 Silent p.P243P 0.32 TCGA-E7-A97P-01 11 63990581 63990581 G C FERMT3 Missense_Mutation p.D582H 0.16 deleterious(0) probably_damaging(0.998) TCGA-E7-A97P-01 11 64893219 64893219 G T MRPL49 Missense_Mutation p.D126Y 0.26 deleterious(0.01) benign(0.398) TCGA-E7-A97P-01 11 64893425 64893425 G C MRPL49 3'UTR 0.23 TCGA-E7-A97P-01 11 65664290 65664290 G A FOSL1 Missense_Mutation p.P96L 0.17 tolerated(0.19) benign(0.021) TCGA-E7-A97P-01 11 6635696 6635696 G A TPP1 3'UTR 0.29 TCGA-E7-A97P-01 11 66617150 66617150 A C PC Missense_Mutation p.F1027V 0.17 deleterious(0.01) possibly_damaging(0.734) TCGA-E7-A97P-01 11 71714955 71714955 G A NUMA1 Missense_Mutation p.A2105V 0.31 benign(0.008) TCGA-E7-A97P-01 12 101750853 101750853 G C UTP20 Missense_Mutation p.G1895A 0.11 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 12 102040593 102040593 C T MYBPC1 Nonsense_Mutation p.Q315* 0.21 TCGA-E7-A97P-01 12 102040609 102040609 C T MYBPC1 Missense_Mutation p.S320L 0.18 deleterious(0) possibly_damaging(0.595) TCGA-E7-A97P-01 12 121205247 121205247 C - SPPL3 Frame_Shift_Del p.R308Pfs*17 0.13 TCGA-E7-A97P-01 12 121205362 121205362 C A SPPL3 Nonsense_Mutation p.G270* 0.19 TCGA-E7-A97P-01 12 123477076 123477076 G C PITPNM2 Missense_Mutation p.P792A 0.24 deleterious(0) probably_damaging(0.999) TCGA-E7-A97P-01 12 124008081 124008081 C A RILPL1 Missense_Mutation p.D141Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-E7-A97P-01 12 124144444 124144444 G T GTF2H3 Nonsense_Mutation p.E263* 0.29 TCGA-E7-A97P-01 12 131466498 131466498 G T GPR133 Missense_Mutation p.G127V 0.15 deleterious(0) probably_damaging(0.994) TCGA-E7-A97P-01 12 132204013 132204013 G A SFSWAP Missense_Mutation p.E179K 0.30 tolerated(0.06) benign(0.123) TCGA-E7-A97P-01 12 132239971 132239971 T C SFSWAP Missense_Mutation p.Y499H 0.26 deleterious(0) probably_damaging(0.999) TCGA-E7-A97P-01 12 26647275 26647275 T C ITPR2 Splice_Site p.X1728_splice 0.36 TCGA-E7-A97P-01 12 31850846 31850846 G C AMN1 Missense_Mutation p.S121C 0.20 tolerated(0.18) benign(0.006) TCGA-E7-A97P-01 12 47472708 47472708 C T AMIGO2 Silent p.L26L 0.11 TCGA-E7-A97P-01 12 50616126 50616145 TGGTCTGCTCTGTGCCTAAT - LIMA1 Frame_Shift_Del p.I97Sfs*4 0.11 TCGA-E7-A97P-01 12 57965104 57965104 G A KIF5A Missense_Mutation p.D432N 0.41 deleterious(0) probably_damaging(0.998) TCGA-E7-A97P-01 12 62777939 62777939 A G USP15 Silent p.K443K 0.12 TCGA-E7-A97P-01 12 66703654 66703654 A G HELB Missense_Mutation p.N316D 0.17 tolerated(1) benign(0.001) TCGA-E7-A97P-01 12 85255282 85255282 G A SLC6A15 3'UTR 0.27 TCGA-E7-A97P-01 12 93221728 93221728 A G EEA1 Missense_Mutation p.V455A 0.25 tolerated(0.31) benign(0.085) TCGA-E7-A97P-01 13 113460595 113460595 G C ATP11A Silent p.T107T 0.16 TCGA-E7-A97P-01 13 25823472 25823472 G T MTMR6 Missense_Mutation p.S588R 0.18 tolerated_low_confidence(0.07) benign(0.055) TCGA-E7-A97P-01 13 29286865 29286865 C G SLC46A3 Missense_Mutation p.G338R 0.31 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 13 66878787 66878787 T G PCDH9 Nonstop_Mutation p.*1238Yext*26 0.24 TCGA-E7-A97P-01 13 77642913 77642913 T C MYCBP2 Silent p.E3948E 0.25 TCGA-E7-A97P-01 13 80911159 80911159 G C SPRY2 Missense_Mutation p.H228D 0.25 deleterious(0) probably_damaging(0.991) TCGA-E7-A97P-01 14 100705714 100705714 G T YY1 Nonsense_Mutation p.E45* 0.26 TCGA-E7-A97P-01 14 24662252 24662252 T C TM9SF1 Missense_Mutation p.D190G 0.23 tolerated(0.4) benign(0.309) TCGA-E7-A97P-01 14 24901081 24901081 C T KHNYN Missense_Mutation p.A205V 0.18 tolerated(0.22) benign(0.002) TCGA-E7-A97P-01 14 24906567 24906567 C G KHNYN 3'UTR 0.21 TCGA-E7-A97P-01 14 45706894 45706894 T C MIS18BP1 Missense_Mutation p.S392G 0.23 tolerated(0.11) benign(0.002) TCGA-E7-A97P-01 14 51243772 51243772 C T NIN Silent p.L187L 0.07 TCGA-E7-A97P-01 14 75142407 75142407 G A AREL1 Missense_Mutation p.P359S 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-E7-A97P-01 15 29092255 29092255 A T GOLGA6L7P RNA 0.19 TCGA-E7-A97P-01 15 37100570 37100570 G C C15orf41 Missense_Mutation p.E254D 0.25 tolerated(0.22) benign(0.083) TCGA-E7-A97P-01 15 41350881 41350881 T C INO80 Silent p.Q647Q 0.22 TCGA-E7-A97P-01 15 42019568 42019568 A G MGA Silent p.K1207K 0.21 TCGA-E7-A97P-01 15 48779348 48779348 G - FBN1 Frame_Shift_Del p.C1171Wfs*2 0.15 TCGA-E7-A97P-01 15 56683503 56683503 C G TEX9 Nonsense_Mutation p.S153* 0.21 TCGA-E7-A97P-01 15 72118885 72118885 C A MYO9A 3'UTR 0.22 TCGA-E7-A97P-01 15 74276451 74276451 C T STOML1 Missense_Mutation p.G342R 0.22 deleterious(0) probably_damaging(0.958) TCGA-E7-A97P-01 15 75183823 75183823 G A MPI Missense_Mutation p.G83D 0.20 deleterious(0) probably_damaging(0.974) TCGA-E7-A97P-01 16 1889287 1889287 C T MEIOB Missense_Mutation p.G396E 0.18 tolerated(0.07) possibly_damaging(0.692) TCGA-E7-A97P-01 16 19710913 19710913 C G C16orf62 Silent p.L1001L 0.25 TCGA-E7-A97P-01 16 24582507 24582507 C G RBBP6 Missense_Mutation p.Q1374E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-E7-A97P-01 16 66945116 66945116 G C CDH16 Silent p.T631T 0.25 TCGA-E7-A97P-01 16 69481052 69481075 GCACCCTGGAGGAGAAGAGGTTCT - CYB5B Splice_Site p.X59_splice 0.17 TCGA-E7-A97P-01 16 89805631 89805631 G C FANCA Missense_Mutation p.D1359E 0.29 tolerated(0.12) benign(0.417) TCGA-E7-A97P-01 17 13503916 13503916 G A HS3ST3A1 Silent p.D177D 0.31 TCGA-E7-A97P-01 17 18151059 18151059 G A FLII Missense_Mutation p.A800V 0.24 deleterious(0) probably_damaging(0.999) TCGA-E7-A97P-01 17 26901578 26901578 A C ALDOC Missense_Mutation p.I186M 0.38 deleterious(0.01) probably_damaging(0.937) TCGA-E7-A97P-01 17 28788315 28788315 A T CPD Missense_Mutation p.S1206C 0.47 deleterious(0) probably_damaging(0.982) TCGA-E7-A97P-01 17 35548097 35548097 G C ACACA Silent p.L1512L 0.22 TCGA-E7-A97P-01 17 40722064 40722064 G C MLX Missense_Mutation p.D235H 0.05 deleterious(0) probably_damaging(0.999) TCGA-E7-A97P-01 17 48450558 48450558 G T MRPL27 5'UTR 0.53 TCGA-E7-A97P-01 17 7249747 7249747 G A ACAP1 Missense_Mutation p.C315Y 0.41 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 18 20833798 20833798 A T CABLES1 Missense_Mutation p.K553N 0.16 deleterious(0.05) probably_damaging(0.998) TCGA-E7-A97P-01 18 34380205 34380205 T C TPGS2 Missense_Mutation p.N151S 0.21 tolerated(0.35) benign(0.004) TCGA-E7-A97P-01 18 9583194 9583214 GAAACCGCCATGAAGCATTCA - PPP4R1 In_Frame_Del p.E274_S280del 0.16 TCGA-E7-A97P-01 19 10169269 10169269 A G C3P1 RNA 0.12 TCGA-E7-A97P-01 19 15224636 15224636 C A SYDE1 Silent p.V690V 0.29 TCGA-E7-A97P-01 19 20728764 20728764 G A ZNF737 Missense_Mutation p.A82V 0.14 deleterious(0.04) benign(0.424) TCGA-E7-A97P-01 19 31039609 31039609 C T ZNF536 Missense_Mutation p.A1028V 0.28 deleterious(0) benign(0.12) TCGA-E7-A97P-01 19 3110265 3110265 C T GNA11 Silent p.T85T 0.19 TCGA-E7-A97P-01 19 32902322 32902322 C G DPY19L3 Intron 0.16 TCGA-E7-A97P-01 19 35523483 35523483 T C SCN1B Missense_Mutation p.V31A 0.18 deleterious(0) probably_damaging(0.986) TCGA-E7-A97P-01 19 35657303 35657303 G T FXYD5 Intron 0.11 TCGA-E7-A97P-01 19 36271141 36271141 T A ARHGAP33 Missense_Mutation p.L177H 0.10 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-E7-A97P-01 19 37147369 37147369 C G ZNF461 Missense_Mutation p.E71D 0.10 tolerated(0.6) benign(0.007) TCGA-E7-A97P-01 19 37368673 37368673 A G ZNF345 Missense_Mutation p.Y314C 0.21 deleterious(0) probably_damaging(0.983) TCGA-E7-A97P-01 19 38973746 38973746 A G RYR1 Missense_Mutation p.K1567R 0.12 possibly_damaging(0.86) TCGA-E7-A97P-01 19 39691042 39691042 C T NCCRP1 Missense_Mutation p.A202V 0.19 deleterious(0) probably_damaging(0.983) TCGA-E7-A97P-01 19 41220456 41220456 C G ADCK4 Missense_Mutation p.G28R 0.29 tolerated_low_confidence(0.57) benign(0.013) TCGA-E7-A97P-01 19 45396118 45396118 A C TOMM40 Missense_Mutation p.T123P 0.18 tolerated(0.18) benign(0.403) TCGA-E7-A97P-01 19 45856034 45856034 G C ERCC2 Silent p.P624P 0.07 TCGA-E7-A97P-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.15 deleterious(0) probably_damaging(0.979) TCGA-E7-A97P-01 19 49993925 49993925 A G RPL13A Intron 0.06 TCGA-E7-A97P-01 19 54396620 54396620 G T PRKCG Missense_Mutation p.C305F 0.18 tolerated(0.31) benign(0.03) TCGA-E7-A97P-01 19 54647986 54647986 C T CNOT3 Missense_Mutation p.T134M 0.09 deleterious(0) probably_damaging(0.991) TCGA-E7-A97P-01 19 56466879 56466879 C A NLRP8 Silent p.T485T 0.20 TCGA-E7-A97P-01 19 58083387 58083387 C T ZNF416 3'UTR 0.10 TCGA-E7-A97P-01 19 6418756 6418756 C A KHSRP Missense_Mutation p.G246V 0.14 deleterious(0) probably_damaging(0.996) TCGA-E7-A97P-01 1 101339469 101339469 T C EXTL2 3'UTR 0.15 TCGA-E7-A97P-01 1 109888389 109888389 G T SORT1 Missense_Mutation p.S316Y 0.04 deleterious(0) probably_damaging(0.953) TCGA-E7-A97P-01 1 117504133 117504134 - A PTGFRN Frame_Shift_Ins p.T495Nfs*46 0.17 TCGA-E7-A97P-01 1 12378315 12378315 G T VPS13D Silent p.V2445V 0.21 TCGA-E7-A97P-01 1 150443138 150443138 A G RPRD2 Missense_Mutation p.T572A 0.16 tolerated_low_confidence(0.47) benign(0) TCGA-E7-A97P-01 1 150463184 150463184 C A TARS2 Missense_Mutation p.F165L 0.18 deleterious(0.02) benign(0.058) TCGA-E7-A97P-01 1 150789620 150789620 T C ARNT Missense_Mutation p.D546G 0.25 tolerated(0.08) benign(0.213) TCGA-E7-A97P-01 1 156553130 156553130 G A TTC24 Missense_Mutation p.G347E 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-E7-A97P-01 1 158152732 158152732 C A CD1D Nonsense_Mutation p.C224* 0.22 TCGA-E7-A97P-01 1 161166023 161166023 C G ADAMTS4 Missense_Mutation p.R343P 0.21 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 1 167096885 167096885 G A DUSP27 Silent p.K839K 0.18 TCGA-E7-A97P-01 1 182781338 182781338 C T NPL Missense_Mutation p.S93L 0.26 deleterious(0) possibly_damaging(0.685) TCGA-E7-A97P-01 1 201437599 201437599 T A PHLDA3 Nonsense_Mutation p.K106* 0.21 TCGA-E7-A97P-01 1 205902136 205902136 T C SLC26A9 Missense_Mutation p.K68E 0.19 deleterious(0) probably_damaging(0.994) TCGA-E7-A97P-01 1 21804683 21804683 G A NBPF3 Missense_Mutation p.D347N 0.24 deleterious(0.01) probably_damaging(0.945) TCGA-E7-A97P-01 1 223990351 223990351 A C TP53BP2 Intron 0.24 TCGA-E7-A97P-01 1 224577491 224577491 C A WDR26 3'UTR 0.11 TCGA-E7-A97P-01 1 232601013 232601013 C A SIPA1L2 Missense_Mutation p.R798L 0.21 tolerated(0.06) probably_damaging(0.953) TCGA-E7-A97P-01 1 3544188 3544188 G A TPRG1L Missense_Mutation p.A199T 0.21 tolerated(0.55) benign(0.027) TCGA-E7-A97P-01 1 35656103 35656103 G A SFPQ Nonsense_Mutation p.Q471* 0.10 TCGA-E7-A97P-01 1 38149079 38149079 A G C1orf109 Silent p.S162S 0.19 TCGA-E7-A97P-01 1 52238337 52238338 - C OSBPL9 Frame_Shift_Ins p.K382Qfs*12 0.14 TCGA-E7-A97P-01 1 54675780 54675780 A G MRPL37 Missense_Mutation p.I270V 0.20 tolerated(1) benign(0.001) TCGA-E7-A97P-01 1 70504634 70504634 G T LRRC7 Missense_Mutation p.D1005Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-E7-A97P-01 1 70687340 70687340 C T SRSF11 Silent p.V7V 0.13 TCGA-E7-A97P-01 1 70687345 70687345 G T SRSF11 Missense_Mutation p.S9I 0.13 deleterious_low_confidence(0) unknown(0) TCGA-E7-A97P-01 1 70687346 70687346 C A SRSF11 Missense_Mutation p.S9R 0.14 deleterious_low_confidence(0) unknown(0) TCGA-E7-A97P-01 1 84387031 84387031 G A TTLL7 Nonsense_Mutation p.Q397* 0.24 TCGA-E7-A97P-01 20 13269291 13269291 G A ISM1 Missense_Mutation p.A250T 0.17 deleterious(0.01) possibly_damaging(0.73) TCGA-E7-A97P-01 20 30070208 30070208 G A REM1 Missense_Mutation p.R181H 0.21 deleterious(0) possibly_damaging(0.761) TCGA-E7-A97P-01 20 32677524 32677524 G A EIF2S2 3'UTR 0.18 TCGA-E7-A97P-01 20 37353264 37353264 G A SLC32A1 5'UTR 0.35 TCGA-E7-A97P-01 20 42826138 42826138 C T OSER1 Missense_Mutation p.A145T 0.19 tolerated(0.23) benign(0.11) TCGA-E7-A97P-01 20 42826201 42826201 A G OSER1 Missense_Mutation p.S124P 0.22 tolerated(1) benign(0.002) TCGA-E7-A97P-01 20 44184453 44184453 C T WFDC8 Nonsense_Mutation p.W111* 0.29 TCGA-E7-A97P-01 20 44983600 44983600 G T SLC35C2 Silent p.L194L 0.19 TCGA-E7-A97P-01 20 61637572 61637572 G A BHLHE23 Silent p.N169N 0.33 TCGA-E7-A97P-01 20 62850369 62850369 C T MYT1 Missense_Mutation p.P651L 0.31 possibly_damaging(0.61) TCGA-E7-A97P-01 21 33032093 33032093 A G SOD1 Missense_Mutation p.K4R 0.12 tolerated(0.1) benign(0.014) TCGA-E7-A97P-01 21 45837906 45837906 G A TRPM2 Silent p.P1081P 0.20 TCGA-E7-A97P-01 22 42463220 42463220 G A NAGA Silent p.T133T 0.22 TCGA-E7-A97P-01 22 43089097 43089097 G A A4GALT Silent p.I287I 0.20 TCGA-E7-A97P-01 22 50720089 50720089 G A PLXNB2 Missense_Mutation p.T1143M 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-E7-A97P-01 22 50945329 50945329 C T LMF2 Missense_Mutation p.G77D 0.30 deleterious(0.03) benign(0.26) TCGA-E7-A97P-01 2 108614419 108614419 C G SLC5A7 Missense_Mutation p.L192V 0.25 deleterious(0.03) probably_damaging(0.967) TCGA-E7-A97P-01 2 109066134 109066134 G C GCC2 Missense_Mutation p.G18R 0.27 deleterious(0) possibly_damaging(0.723) TCGA-E7-A97P-01 2 11586604 11586604 C T E2F6 Silent p.%3D 0.13 TCGA-E7-A97P-01 2 120620165 120620165 G T PTPN4 Missense_Mutation p.L64F 0.12 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 2 158114759 158114782 AGGATTCAGAGTTCAGCCAGACCA - GALNT5 In_Frame_Del p.F57_G64del 0.24 TCGA-E7-A97P-01 2 159028604 159028604 T C CCDC148 3'UTR 0.20 TCGA-E7-A97P-01 2 160737661 160737661 T C LY75-CD302 Missense_Mutation p.Y446C 0.13 deleterious(0) probably_damaging(0.993) TCGA-E7-A97P-01 2 161138808 161138808 T G RBMS1 Intron 0.23 TCGA-E7-A97P-01 2 165551150 165551150 G A COBLL1 Missense_Mutation p.P956S 0.12 tolerated(0.34) benign(0.027) TCGA-E7-A97P-01 2 17697922 17697923 - A RAD51AP2 Frame_Shift_Ins p.L587Ffs*4 0.18 TCGA-E7-A97P-01 2 177054731 177054731 A G HOXD1 Missense_Mutation p.K283R 0.14 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 2 178415703 178415703 T C TTC30B Missense_Mutation p.M597V 0.17 deleterious(0.02) benign(0.206) TCGA-E7-A97P-01 2 196799388 196799388 G A DNAH7 Missense_Mutation p.T1133I 0.15 deleterious(0.02) probably_damaging(1) TCGA-E7-A97P-01 2 197189745 197189745 T C HECW2 Missense_Mutation p.T234A 0.17 tolerated(0.56) benign(0.038) TCGA-E7-A97P-01 2 210557962 210557962 C A MAP2 Silent p.T356T 0.12 TCGA-E7-A97P-01 2 21235228 21235228 A G APOB Silent p.S1504S 0.24 TCGA-E7-A97P-01 2 228228662 228228662 A T TM4SF20 Silent p.G156G 0.25 TCGA-E7-A97P-01 2 37475333 37475333 A G NDUFAF7 Missense_Mutation p.Y389C 0.18 deleterious(0) probably_damaging(0.992) TCGA-E7-A97P-01 2 39514002 39514006 TTTCT - MAP4K3 Frame_Shift_Del p.K525Rfs*7 0.16 TCGA-E7-A97P-01 2 47206029 47206029 G C TTC7A Silent p.V249V 0.12 TCGA-E7-A97P-01 2 71160141 71160141 C T VAX2 Missense_Mutation p.P227L 0.19 tolerated(0.14) benign(0.002) TCGA-E7-A97P-01 2 95519022 95519022 A G ANKRD20A8P RNA 0.17 TCGA-E7-A97P-01 3 100617628 100617628 G A ABI3BP Missense_Mutation p.P154S 0.20 tolerated(0.08) possibly_damaging(0.641) TCGA-E7-A97P-01 3 11300831 11300831 T G HRH1 Silent p.T36T 0.19 TCGA-E7-A97P-01 3 113375143 113375143 G C KIAA2018 Missense_Mutation p.P1796A 0.18 benign(0.065) TCGA-E7-A97P-01 3 120122193 120122193 C A FSTL1 Missense_Mutation p.C197F 0.18 deleterious(0) probably_damaging(0.982) TCGA-E7-A97P-01 3 126191040 126191040 T C ZXDC Missense_Mutation p.Y339C 0.30 deleterious(0) probably_damaging(0.999) TCGA-E7-A97P-01 3 136573881 136573881 T C SLC35G2 Silent p.N193N 0.20 TCGA-E7-A97P-01 3 153220301 153220301 G C C3orf79 3'UTR 0.33 TCGA-E7-A97P-01 3 158431599 158431599 C T RARRES1 Missense_Mutation p.R109H 0.19 tolerated(0.6) benign(0.023) TCGA-E7-A97P-01 3 160248719 160248719 T C KPNA4 Silent p.L131L 0.21 TCGA-E7-A97P-01 3 171410146 171410146 C A PLD1 Missense_Mutation p.L438F 0.23 deleterious(0) probably_damaging(0.987) TCGA-E7-A97P-01 3 184566960 184566960 C G VPS8 Missense_Mutation p.L215V 0.19 deleterious(0.04) probably_damaging(0.947) TCGA-E7-A97P-01 3 185191450 185191450 A G MAP3K13 Silent p.E777E 0.19 TCGA-E7-A97P-01 3 24018906 24018906 C G NR1D2 Missense_Mutation p.P579R 0.25 deleterious(0) probably_damaging(0.997) TCGA-E7-A97P-01 3 42236344 42236344 G A TRAK1 Missense_Mutation p.E342K 0.18 deleterious(0) possibly_damaging(0.831) TCGA-E7-A97P-01 3 54962052 54962052 G A LRTM1 5'UTR 0.13 TCGA-E7-A97P-01 3 57545297 57545297 A G PDE12 Missense_Mutation p.I466V 0.14 tolerated(0.24) benign(0.233) TCGA-E7-A97P-01 3 69087847 69087847 G A TMF1 Silent p.A673A 0.21 TCGA-E7-A97P-01 3 89259167 89259167 G C EPHA3 Missense_Mutation p.R104P 0.21 deleterious(0) probably_damaging(0.997) TCGA-E7-A97P-01 4 114158181 114158181 A G ANK2 Silent p.G174G 0.24 TCGA-E7-A97P-01 4 1161258 1161258 T G SPON2 3'UTR 0.15 TCGA-E7-A97P-01 4 120463680 120463680 C T PDE5A Silent p.G502G 0.21 TCGA-E7-A97P-01 4 140278629 140278629 G T NAA15 Missense_Mutation p.A393S 0.14 deleterious(0.02) benign(0.364) TCGA-E7-A97P-01 4 140278630 140278630 C T NAA15 Missense_Mutation p.A393V 0.14 deleterious(0) probably_damaging(0.936) TCGA-E7-A97P-01 4 148993173 148993173 G T ARHGAP10 Nonsense_Mutation p.E768* 0.14 TCGA-E7-A97P-01 4 177605147 177605147 C T VEGFC Missense_Mutation p.G398E 0.20 deleterious(0.04) probably_damaging(0.941) TCGA-E7-A97P-01 4 6107452 6107452 C T JAKMIP1 Silent p.A124A 0.50 TCGA-E7-A97P-01 4 83763479 83763479 C A SEC31A Missense_Mutation p.A928S 0.30 tolerated(0.54) benign(0.002) TCGA-E7-A97P-01 4 88987031 88987031 G A PKD2 Silent p.R786R 0.18 TCGA-E7-A97P-01 5 118437645 118437645 G - DMXL1 Frame_Shift_Del p.G77Efs*36 0.24 TCGA-E7-A97P-01 5 140736874 140736874 G A PCDHGA4 Missense_Mutation p.V703I 0.20 tolerated_low_confidence(0.18) benign(0.046) TCGA-E7-A97P-01 5 149669140 149669140 C G CAMK2A Missense_Mutation p.E17Q 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-E7-A97P-01 5 150056288 150056288 G T MYOZ3 Nonsense_Mutation p.G203* 0.10 TCGA-E7-A97P-01 5 150276496 150276496 A G ZNF300 Missense_Mutation p.L118S 0.20 tolerated(0.73) possibly_damaging(0.647) TCGA-E7-A97P-01 5 15936981 15936981 G T FBXL7 Missense_Mutation p.G388C 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-E7-A97P-01 5 32093105 32093105 T C PDZD2 Missense_Mutation p.I2607T 0.26 deleterious(0) possibly_damaging(0.649) TCGA-E7-A97P-01 5 33455765 33455765 G C TARS Missense_Mutation p.E250Q 0.17 tolerated(0.06) possibly_damaging(0.468) TCGA-E7-A97P-01 5 36195210 36195210 C T NADK2 3'UTR 0.17 TCGA-E7-A97P-01 5 40853064 40853064 G T CARD6 Missense_Mutation p.G544C 0.17 deleterious(0) possibly_damaging(0.894) TCGA-E7-A97P-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.24 tolerated(0.25) benign(0.064) TCGA-E7-A97P-01 5 442599 442599 G A C5orf55 Silent p.R113R 0.27 TCGA-E7-A97P-01 5 5232609 5232609 T G ADAMTS16 Missense_Mutation p.S610R 0.14 tolerated(0.08) benign(0.158) TCGA-E7-A97P-01 5 52778754 52778754 G T FST Missense_Mutation p.V44F 0.36 tolerated(0.11) benign(0.32) TCGA-E7-A97P-01 5 61887442 61887442 C T IPO11 Missense_Mutation p.S914L 0.09 tolerated(0.38) benign(0.002) TCGA-E7-A97P-01 5 72377797 72377799 CCC T FCHO2 Frame_Shift_Del p.P723Lfs*17 0.26 TCGA-E7-A97P-01 5 76029019 76029019 C T F2R Silent p.I323I 0.06 TCGA-E7-A97P-01 5 76128930 76128930 G A F2RL1 Missense_Mutation p.M166I 0.20 tolerated(1) benign(0.013) TCGA-E7-A97P-01 5 82837857 82837857 C T VCAN Missense_Mutation p.P3012L 0.31 tolerated(0.68) benign(0.016) TCGA-E7-A97P-01 6 1313374 1313376 CAA - FOXQ1 In_Frame_Del p.N146del 0.23 TCGA-E7-A97P-01 6 24178651 24178651 C A DCDC2 Missense_Mutation p.E411D 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.89) TCGA-E7-A97P-01 6 24302032 24302032 G A DCDC2 Silent p.L156L 0.28 TCGA-E7-A97P-01 6 26199132 26199132 C G HIST1H2AD Missense_Mutation p.A114P 0.24 tolerated_low_confidence(0.15) benign(0.034) TCGA-E7-A97P-01 6 39328252 39328252 C T KIF6 Silent p.L667L 0.25 TCGA-E7-A97P-01 6 43403613 43403613 C G ABCC10 Missense_Mutation p.P578R 0.30 tolerated(0.16) probably_damaging(0.921) TCGA-E7-A97P-01 6 51908479 51908479 G C PKHD1 Missense_Mutation p.S922C 0.22 deleterious(0) probably_damaging(0.933) TCGA-E7-A97P-01 6 57012711 57012711 A G ZNF451 Missense_Mutation p.I610V 0.29 tolerated(0.12) probably_damaging(0.996) TCGA-E7-A97P-01 6 99347204 99347204 G C FBXL4 Missense_Mutation p.F419L 0.12 tolerated(0.25) possibly_damaging(0.546) TCGA-E7-A97P-01 6 99819440 99819440 A G COQ3 Silent p.T251T 0.17 TCGA-E7-A97P-01 7 106830730 106830730 T A HBP1 Missense_Mutation p.F345L 0.18 tolerated(0.21) benign(0.182) TCGA-E7-A97P-01 7 113519786 113519786 G A PPP1R3A Missense_Mutation p.P454L 0.13 deleterious(0.02) benign(0.021) TCGA-E7-A97P-01 7 23157522 23157522 T A KLHL7 Intron 0.28 TCGA-E7-A97P-01 7 27140643 27140643 G A HOXA2 Missense_Mutation p.T278I 0.15 tolerated(0.11) benign(0.193) TCGA-E7-A97P-01 7 40102700 40102700 G A CDK13 Splice_Site p.X927_splice 0.09 TCGA-E7-A97P-01 7 44282882 44282882 C A CAMK2B Missense_Mutation p.A190S 0.11 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-E7-A97P-01 7 55902224 55902224 T C SEPT14 Missense_Mutation p.Q205R 0.20 tolerated(0.09) possibly_damaging(0.872) TCGA-E7-A97P-01 7 72754661 72754661 C T FKBP6 Nonsense_Mutation p.R204* 0.25 TCGA-E7-A97P-01 7 75183750 75183750 G A HIP1 Missense_Mutation p.A680V 0.13 tolerated(0.09) benign(0.005) TCGA-E7-A97P-01 7 97821567 97821567 T C LMTK2 Missense_Mutation p.L597P 0.20 tolerated(0.06) possibly_damaging(0.62) TCGA-E7-A97P-01 7 99312265 99312265 A G CYP3A7 Silent p.N237N 0.16 TCGA-E7-A97P-01 8 100999771 100999771 G A RGS22 Missense_Mutation p.S1032L 0.18 deleterious(0) benign(0.119) TCGA-E7-A97P-01 8 124992721 124992721 T A FER1L6 Missense_Mutation p.F360L 0.35 tolerated(0.18) probably_damaging(0.998) TCGA-E7-A97P-01 8 139189617 139189617 A C FAM135B Missense_Mutation p.L359R 0.29 tolerated(0.36) benign(0.01) TCGA-E7-A97P-01 8 143822607 143822607 T C SLURP1 Missense_Mutation p.H89R 0.25 tolerated(0.41) benign(0.177) TCGA-E7-A97P-01 8 145749541 145749541 C T LRRC24 Missense_Mutation p.R187Q 0.04 tolerated(0.67) benign(0.037) TCGA-E7-A97P-01 8 146067713 146067713 C T ZNF7 Silent p.H407H 0.35 TCGA-E7-A97P-01 8 48874652 48874652 A G MCM4 Missense_Mutation p.Y92C 0.26 deleterious(0) probably_damaging(0.997) TCGA-E7-A97P-01 8 56015435 56015435 C A XKR4 Missense_Mutation p.D129E 0.18 deleterious(0) probably_damaging(0.995) TCGA-E7-A97P-01 8 89128907 89128907 C A MMP16 Silent p.P304P 0.13 TCGA-E7-A97P-01 8 95412469 95412469 A G RAD54B Silent p.D389D 0.26 TCGA-E7-A97P-01 9 101908834 101908834 G T TGFBR1 Missense_Mutation p.D400Y 0.38 deleterious(0) probably_damaging(1) TCGA-E7-A97P-01 9 116812148 116812148 G T ZNF618 Missense_Mutation p.A763S 0.49 tolerated(0.73) benign(0.003) TCGA-E7-A97P-01 9 117108961 117108961 G A AKNA Nonsense_Mutation p.R1168* 0.38 TCGA-E7-A97P-01 9 139972887 139972887 G A UAP1L1 Intron 0.28 TCGA-E7-A97P-01 9 5921268 5921268 T C KIAA2026 Silent p.G1576G 0.41 TCGA-E7-A97P-01 X 100912483 100912483 C T ARMCX2 Missense_Mutation p.R31K 0.39 deleterious_low_confidence(0.04) benign(0.005) TCGA-E7-A97P-01 X 108926500 108926500 G A ACSL4 Silent p.D72D 0.38 TCGA-E7-A97P-01 X 117770339 117770339 C T DOCK11 Missense_Mutation p.S1306L 0.38 tolerated(0.1) benign(0.122) TCGA-E7-A97P-01 X 123202475 123202475 T C STAG2 Missense_Mutation p.L776P 0.44 deleterious(0) probably_damaging(0.952) TCGA-E7-A97P-01 X 135289283 135289283 T C FHL1 Missense_Mutation p.C89R 0.42 deleterious(0.01) probably_damaging(1) TCGA-E7-A97P-01 X 146318513 146318513 C T MIR508 RNA 0.27 TCGA-E7-A97P-01 X 153068841 153068841 G C PDZD4 Silent p.V759V 0.75 TCGA-E7-A97P-01 X 153664175 153664175 A C ATP6AP1 Missense_Mutation p.K451Q 0.37 tolerated(0.05) probably_damaging(0.974) TCGA-E7-A97P-01 X 16846329 16846329 C T TXLNG Missense_Mutation p.A204V 0.36 deleterious(0) probably_damaging(0.987) TCGA-E7-A97P-01 X 40571448 40571448 G A MED14 Silent p.Y293Y 0.40 TCGA-E7-A97P-01 X 54578149 54578149 A G GNL3L Missense_Mutation p.I338V 0.46 tolerated(0.07) probably_damaging(0.994) TCGA-E7-A97Q-01 10 17089531 17089531 T A CUBN Missense_Mutation p.N1071Y 0.39 deleterious(0) probably_damaging(0.981) TCGA-E7-A97Q-01 10 30728018 30728018 C T MAP3K8 Nonsense_Mutation p.Q51* 0.18 TCGA-E7-A97Q-01 10 46611771 46611771 C G PTPN20A Missense_Mutation p.L25F 0.13 deleterious(0.01) possibly_damaging(0.809) TCGA-E7-A97Q-01 10 70405437 70405437 C T TET1 Missense_Mutation p.S984L 0.59 tolerated(0.65) benign(0.01) TCGA-E7-A97Q-01 10 93252138 93252138 G C HECTD2 Missense_Mutation p.K443N 0.17 deleterious(0) probably_damaging(1) TCGA-E7-A97Q-01 11 103797741 103797741 A G PDGFD Missense_Mutation p.C296R 0.84 deleterious(0) probably_damaging(1) TCGA-E7-A97Q-01 11 55135821 55135821 C T OR4A15 Silent p.I154I 0.32 TCGA-E7-A97Q-01 11 71698077 71698077 C T RNF121 Silent p.I142I 0.29 TCGA-E7-A97Q-01 11 720123 720123 G A EPS8L2 Missense_Mutation p.R76Q 0.26 deleterious(0) probably_damaging(0.971) TCGA-E7-A97Q-01 12 112844607 112844607 C T RPL6 Missense_Mutation p.A142T 0.17 tolerated(0.07) benign(0.008) TCGA-E7-A97Q-01 12 113433126 113433130 GATCT - OAS2 Nonsense_Mutation p.W158* 0.16 TCGA-E7-A97Q-01 12 123201296 123201296 G C HCAR3 5'UTR 0.52 TCGA-E7-A97Q-01 12 26276595 26276596 - G BHLHE41 Frame_Shift_Ins p.Q105Pfs*46 0.39 TCGA-E7-A97Q-01 12 42853988 42853988 C T PRICKLE1 Missense_Mutation p.D707N 0.34 deleterious(0.02) benign(0.054) TCGA-E7-A97Q-01 12 51723536 51723536 C T CELA1 Missense_Mutation p.G231S 0.38 tolerated(0.07) probably_damaging(0.981) TCGA-E7-A97Q-01 12 53573619 53573619 C T CSAD 5'UTR 0.19 TCGA-E7-A97Q-01 12 81112796 81112796 C T MYF5 Missense_Mutation p.A245V 0.13 tolerated(0.06) benign(0.02) TCGA-E7-A97Q-01 14 31576197 31576197 C T HECTD1 Missense_Mutation p.R2294K 0.45 tolerated(0.89) benign(0.011) TCGA-E7-A97Q-01 14 31576229 31576229 C G HECTD1 Missense_Mutation p.M2283I 0.47 tolerated(0.48) benign(0.05) TCGA-E7-A97Q-01 14 91526743 91526743 C T RPS6KA5 Silent p.A12A 0.50 TCGA-E7-A97Q-01 14 96730107 96730107 C T BDKRB1 Missense_Mutation p.P30S 0.56 tolerated(0.8) benign(0.005) TCGA-E7-A97Q-01 15 51780819 51780819 C T DMXL2 Silent p.R1659R 0.25 TCGA-E7-A97Q-01 16 31213094 31213094 C T PYCARD Missense_Mutation p.D134N 0.44 deleterious(0) probably_damaging(0.918) TCGA-E7-A97Q-01 16 57241992 57241992 A G RSPRY1 Missense_Mutation p.M125V 0.39 deleterious(0.03) benign(0.138) TCGA-E7-A97Q-01 16 84104237 84104237 G C MBTPS1 Missense_Mutation p.Q580E 0.13 tolerated(0.73) benign(0.016) TCGA-E7-A97Q-01 16 88689632 88689632 C T ZC3H18 Missense_Mutation p.S558F 0.08 deleterious_low_confidence(0) unknown(0) TCGA-E7-A97Q-01 17 27278053 27278053 G A PHF12 5'UTR 0.21 TCGA-E7-A97Q-01 17 73623495 73623496 - AGTT RECQL5 3'UTR 0.31 TCGA-E7-A97Q-01 17 7577036 7577036 G - TP53 Frame_Shift_Del p.P301Qfs*44 0.32 TCGA-E7-A97Q-01 17 8218509 8218509 C G ARHGEF15 Missense_Mutation p.R392G 0.32 deleterious(0.01) benign(0.312) TCGA-E7-A97Q-01 19 44612405 44612405 C T ZNF224 Missense_Mutation p.H698Y 0.60 deleterious(0) possibly_damaging(0.728) TCGA-E7-A97Q-01 19 44612474 44612474 C T ZNF224 3'UTR 0.56 TCGA-E7-A97Q-01 19 49012112 49012112 A C LMTK3 Missense_Mutation p.Y214D 0.08 probably_damaging(0.988) TCGA-E7-A97Q-01 19 54663960 54663960 C G TMC4 3'UTR 0.24 TCGA-E7-A97Q-01 19 5661536 5661536 C T SAFB Missense_Mutation p.R624C 0.28 tolerated(0.06) unknown(0) TCGA-E7-A97Q-01 19 57803580 57803580 A G ZNF460 Silent p.E557E 0.12 TCGA-E7-A97Q-01 19 58383907 58383907 C A ZNF814 3'UTR 0.18 TCGA-E7-A97Q-01 1 113254634 113254634 C G PPM1J Missense_Mutation p.E296Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-E7-A97Q-01 1 115231273 115231273 C G AMPD1 Missense_Mutation p.D75H 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-E7-A97Q-01 1 197313415 197313415 A G CRB1 Silent p.V219V 0.25 TCGA-E7-A97Q-01 1 201982416 201982417 - A ELF3 Frame_Shift_Ins p.S266Kfs*35 0.31 TCGA-E7-A97Q-01 1 201984342 201984342 A T ELF3 Missense_Mutation p.Y336F 0.48 deleterious(0.02) probably_damaging(0.992) TCGA-E7-A97Q-01 1 237540653 237540653 C T RYR2 Missense_Mutation p.A165V 0.23 benign(0.237) TCGA-E7-A97Q-01 1 43223456 43223456 C A LEPRE1 Nonsense_Mutation p.E360* 0.48 TCGA-E7-A97Q-01 1 53237356 53237356 T C ZYG11B Silent p.F287F 0.50 TCGA-E7-A97Q-01 1 53237368 53237368 T C ZYG11B Silent p.R291R 0.50 TCGA-E7-A97Q-01 20 25003680 25003680 C T ACSS1 Missense_Mutation p.E286K 0.47 deleterious(0) probably_damaging(0.919) TCGA-E7-A97Q-01 20 34505471 34505471 G C PHF20 Missense_Mutation p.D631H 0.45 deleterious(0) probably_damaging(0.999) TCGA-E7-A97Q-01 20 36869998 36869998 T A KIAA1755 Missense_Mutation p.T179S 0.13 tolerated(0.65) benign(0.04) TCGA-E7-A97Q-01 21 31691849 31691849 A G KRTAP26-1 Silent p.L169L 0.41 TCGA-E7-A97Q-01 21 34953734 34953734 G A DONSON Silent p.T408T 0.27 TCGA-E7-A97Q-01 22 22020384 22020384 C T PPIL2 5'UTR 0.21 TCGA-E7-A97Q-01 22 22020385 22020385 C T PPIL2 5'UTR 0.21 TCGA-E7-A97Q-01 22 41556700 41556700 G - EP300 Frame_Shift_Del p.D1217Mfs*10 0.32 TCGA-E7-A97Q-01 2 103353216 103353216 C T MFSD9 Silent p.E18E 0.63 TCGA-E7-A97Q-01 2 10581774 10581774 C A ODC1 Nonsense_Mutation p.E368* 0.42 TCGA-E7-A97Q-01 2 116525965 116525965 T C DPP10 Silent p.A406A 0.58 TCGA-E7-A97Q-01 2 136111039 136111039 G A ZRANB3 Nonsense_Mutation p.Q114* 0.59 TCGA-E7-A97Q-01 2 152128201 152128201 T - NMI Frame_Shift_Del p.N227Ifs*17 0.34 TCGA-E7-A97Q-01 2 152534599 152534599 T A NEB Missense_Mutation p.I1120L 0.30 benign(0.003) TCGA-E7-A97Q-01 2 20647363 20647363 T G RHOB Missense_Mutation p.I46S 0.48 deleterious(0) possibly_damaging(0.802) TCGA-E7-A97Q-01 2 223918016 223918016 C T KCNE4 Silent p.N156N 0.46 TCGA-E7-A97Q-01 3 101283718 101283722 TAACT - TRMT10C Frame_Shift_Del p.L33Nfs*17 0.38 TCGA-E7-A97Q-01 3 172165523 172165523 A T GHSR Nonsense_Mutation p.C227* 0.25 TCGA-E7-A97Q-01 3 196234787 196234787 C T SMCO1 Missense_Mutation p.E206K 0.27 tolerated_low_confidence(1) benign(0) TCGA-E7-A97Q-01 3 32932942 32932942 C A TRIM71 Missense_Mutation p.S749Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-E7-A97Q-01 4 94693464 94693464 A G GRID2 Missense_Mutation p.K947E 0.23 tolerated_low_confidence(1) possibly_damaging(0.522) TCGA-E7-A97Q-01 5 114860685 114860685 A T FEM1C Missense_Mutation p.F392I 0.34 deleterious(0.01) benign(0.101) TCGA-E7-A97Q-01 5 15928166 15928166 C G FBXL7 Missense_Mutation p.P99A 0.35 tolerated(0.34) benign(0.001) TCGA-E7-A97Q-01 5 176025449 176025449 T A GPRIN1 Missense_Mutation p.R463W 0.34 deleterious(0) possibly_damaging(0.509) TCGA-E7-A97Q-01 5 37834811 37834811 C T GDNF Missense_Mutation p.E47K 0.30 tolerated(0.23) benign(0.011) TCGA-E7-A97Q-01 5 38958617 38958617 T C RICTOR Missense_Mutation p.N783S 0.18 tolerated(0.08) probably_damaging(0.997) TCGA-E7-A97Q-01 6 1313398 1313398 C A FOXQ1 Missense_Mutation p.F153L 0.51 deleterious(0.03) possibly_damaging(0.565) TCGA-E7-A97Q-01 6 75968519 75968519 C T TMEM30A Missense_Mutation p.R290Q 0.37 tolerated(0.26) benign(0.001) TCGA-E7-A97Q-01 7 139305249 139305249 C T HIPK2 Silent p.T560T 0.37 TCGA-E7-A97Q-01 7 23383371 23383371 C T IGF2BP3 Missense_Mutation p.R348K 0.13 deleterious(0.01) benign(0.38) TCGA-E7-A97Q-01 7 87465504 87465504 T A SLC25A40 3'UTR 0.50 TCGA-E7-A97Q-01 8 68087416 68087417 - TA CSPP1 Intron 0.40 TCGA-E7-A97Q-01 8 77766241 77766241 A C ZFHX4 Missense_Mutation p.K2362Q 0.18 benign(0.067) TCGA-E7-A97Q-01 X 11786764 11786764 C T MSL3 Missense_Mutation p.A415V 0.26 deleterious(0.04) benign(0.243) TCGA-E7-A97Q-01 X 128657388 128657388 C T SMARCA1 5'UTR 0.23 TCGA-E7-A97Q-01 X 140969350 140969350 T C MAGEC3 Missense_Mutation p.F226S 0.47 deleterious(0) possibly_damaging(0.637) TCGA-E7-A97Q-01 X 150349435 150349435 C G GPR50 Missense_Mutation p.F460L 0.20 deleterious_low_confidence(0) benign(0.437) TCGA-E7-A97Q-01 X 154194915 154194915 G T F8 Missense_Mutation p.Q353K 0.31 tolerated(0.47) benign(0.011) TCGA-E7-A97Q-01 X 44820536 44820536 G - KDM6A Frame_Shift_Del p.R78Pfs*6 0.18 TCGA-E7-A97Q-01 X 44918673 44918673 A - KDM6A Frame_Shift_Del p.N386Ifs*53 0.29 TCGA-E7-A97Q-01 X 48631836 48631836 C A GLOD5 Missense_Mutation p.N156K 0.38 deleterious(0.05) possibly_damaging(0.494) TCGA-E7-A97Q-01 X 49068425 49068425 C T CACNA1F Missense_Mutation p.D1356N 0.42 deleterious(0.03) possibly_damaging(0.618) TCGA-E7-A97Q-01 X 57021212 57021212 C T SPIN3 Missense_Mutation p.G57R 0.24 tolerated(0.14) probably_damaging(0.965) TCGA-FD-A3B3-01 10 100242424 100242424 G A HPSE2 Nonsense_Mutation p.Q528* 0.15 TCGA-FD-A3B3-01 10 102748960 102748960 C G C10orf2 Missense_Mutation p.F331L 0.17 tolerated(0.63) benign(0.004) TCGA-FD-A3B3-01 10 115337829 115337829 T A HABP2 Missense_Mutation p.C165S 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 10 134912196 134912196 C T GPR123 Missense_Mutation p.H62Y 0.13 deleterious(0) possibly_damaging(0.609) TCGA-FD-A3B3-01 10 16932503 16932503 C G CUBN Silent p.V2874V 0.09 TCGA-FD-A3B3-01 10 17087133 17087133 G C CUBN Missense_Mutation p.P1182R 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 10 29600021 29600021 C T LYZL1 3'UTR 0.10 TCGA-FD-A3B3-01 10 38651247 38651247 C T HSD17B7P2 RNA 0.14 TCGA-FD-A3B3-01 10 47087272 47087272 C A NPY4R Silent p.I163I 0.06 TCGA-FD-A3B3-01 10 55973780 55973781 - A PCDH15 Frame_Shift_Ins p.H339Pfs*5 0.17 TCGA-FD-A3B3-01 10 74645595 74645595 C G MCU 3'UTR 0.12 TCGA-FD-A3B3-01 10 78943241 78943241 A G KCNMA1 Missense_Mutation p.V249A 0.10 deleterious(0) benign(0.131) TCGA-FD-A3B3-01 11 104971361 104971361 C T CARD17 Missense_Mutation p.M51I 0.16 tolerated(0.07) possibly_damaging(0.516) TCGA-FD-A3B3-01 11 10555719 10555719 C A RNF141 5'UTR 0.11 TCGA-FD-A3B3-01 11 126147526 126147526 C T FOXRED1 Missense_Mutation p.P468L 0.09 tolerated(0.16) benign(0.002) TCGA-FD-A3B3-01 11 134029834 134029834 C G NCAPD3 Missense_Mutation p.D1274H 0.18 deleterious(0.02) benign(0.227) TCGA-FD-A3B3-01 11 55798793 55798793 C T OR5AS1 Missense_Mutation p.A300V 0.20 deleterious(0.03) benign(0.059) TCGA-FD-A3B3-01 11 55927583 55927583 G C OR8K5 Missense_Mutation p.L71V 0.09 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-FD-A3B3-01 11 56143646 56143646 C A OR8U1 Missense_Mutation p.P183T 0.06 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 11 57135555 57135555 C T P2RX3 Silent p.F305F 0.08 TCGA-FD-A3B3-01 11 62289517 62289517 G A AHNAK Silent p.L4124L 0.04 TCGA-FD-A3B3-01 11 62290726 62290726 G C AHNAK Missense_Mutation p.I3721M 0.05 benign(0.404) TCGA-FD-A3B3-01 11 63312303 63312303 G T RARRES3 Missense_Mutation p.S110I 0.06 deleterious(0) possibly_damaging(0.722) TCGA-FD-A3B3-01 11 65977851 65977851 C T PACS1 Missense_Mutation p.R155C 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 11 67926270 67926270 T C SUV420H1 Missense_Mutation p.R515G 0.06 deleterious(0) possibly_damaging(0.816) TCGA-FD-A3B3-01 11 7021340 7021340 G A ZNF214 Missense_Mutation p.P525L 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 11 77911809 77911809 C T USP35 Silent p.F384F 0.12 TCGA-FD-A3B3-01 11 9305135 9305135 C T TMEM41B Missense_Mutation p.A238T 0.16 deleterious(0) probably_damaging(0.979) TCGA-FD-A3B3-01 12 10342854 10342854 C G TMEM52B 3'UTR 0.21 TCGA-FD-A3B3-01 12 104697894 104697894 C T EID3 Missense_Mutation p.S61L 0.09 deleterious(0.03) benign(0.105) TCGA-FD-A3B3-01 12 106460646 106460646 G A NUAK1 Silent p.L640L 0.06 TCGA-FD-A3B3-01 12 110230175 110230175 G A TRPV4 Silent p.Y628Y 0.14 TCGA-FD-A3B3-01 12 113515265 113515265 C G DTX1 Missense_Mutation p.P99R 0.06 tolerated(0.23) benign(0.019) TCGA-FD-A3B3-01 12 123706297 123706297 G A MPHOSPH9 Missense_Mutation p.S13F 0.06 tolerated_low_confidence(0.69) benign(0.401) TCGA-FD-A3B3-01 12 124305263 124305263 G A DNAH10 Missense_Mutation p.M1261I 0.08 benign(0.013) TCGA-FD-A3B3-01 12 41966808 41966808 G C PDZRN4 Missense_Mutation p.E743Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-FD-A3B3-01 12 57638099 57638099 C T STAC3 Missense_Mutation p.R286Q 0.06 deleterious(0.01) probably_damaging(0.969) TCGA-FD-A3B3-01 12 57638949 57638949 C G STAC3 Missense_Mutation p.E217Q 0.09 tolerated(0.34) benign(0.007) TCGA-FD-A3B3-01 12 57648809 57648809 G C R3HDM2 Missense_Mutation p.S893C 0.07 tolerated(0.25) benign(0.002) TCGA-FD-A3B3-01 12 6085359 6085359 G C VWF Missense_Mutation p.T2452S 0.04 tolerated(0.64) possibly_damaging(0.874) TCGA-FD-A3B3-01 12 6344475 6344475 G A CD9 Silent p.L143L 0.06 TCGA-FD-A3B3-01 13 25670975 25670975 G T PABPC3 Missense_Mutation p.K213N 0.07 tolerated(0.07) benign(0.063) TCGA-FD-A3B3-01 13 73317730 73317730 G C BORA Missense_Mutation p.E148D 0.07 tolerated(0.31) benign(0.012) TCGA-FD-A3B3-01 14 104263749 104263749 C T PPP1R13B Missense_Mutation p.G39E 0.12 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B3-01 14 24727874 24727874 G A TGM1 Missense_Mutation p.R389C 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 14 81744238 81744238 C T STON2 Missense_Mutation p.E473K 0.04 deleterious(0.02) possibly_damaging(0.755) TCGA-FD-A3B3-01 15 23811314 23811314 G A MKRN3 Missense_Mutation p.E129K 0.12 tolerated(0.89) benign(0.253) TCGA-FD-A3B3-01 15 43820200 43820200 C A MAP1A Missense_Mutation p.P2177T 0.13 possibly_damaging(0.818) TCGA-FD-A3B3-01 15 44181066 44181066 C G FRMD5 Missense_Mutation p.E245Q 0.11 tolerated(0.07) probably_damaging(0.95) TCGA-FD-A3B3-01 15 51041038 51041038 G A SPPL2A Silent p.S69S 0.10 TCGA-FD-A3B3-01 15 95019959 95019959 C T MCTP2 Silent p.P835P 0.11 TCGA-FD-A3B3-01 16 11773514 11773514 C G TXNDC11 Missense_Mutation p.R805T 0.11 tolerated(0.05) benign(0.013) TCGA-FD-A3B3-01 16 19501754 19501754 C G TMC5 Missense_Mutation p.L871V 0.13 deleterious(0.02) possibly_damaging(0.532) TCGA-FD-A3B3-01 16 50257151 50257151 G A PAPD5 Missense_Mutation p.E397K 0.06 deleterious(0) probably_damaging(0.974) TCGA-FD-A3B3-01 16 57406489 57406489 G A CX3CL1 Silent p.P3P 0.22 TCGA-FD-A3B3-01 16 64984875 64984875 C T CDH11 Silent p.Q563Q 0.26 TCGA-FD-A3B3-01 16 67662347 67662347 C A CTCF Silent p.T531T 0.23 TCGA-FD-A3B3-01 16 70502749 70502749 C T FUK Intron 0.09 TCGA-FD-A3B3-01 16 77759451 77759451 C G NUDT7 Silent p.L53L 0.25 TCGA-FD-A3B3-01 17 1562039 1562039 G A PRPF8 Silent p.F1719F 0.09 TCGA-FD-A3B3-01 17 32612740 32612740 A G CCL11 5'UTR 0.07 TCGA-FD-A3B3-01 17 38955182 38955182 C A KRT28 Missense_Mutation p.D174Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-FD-A3B3-01 17 59926522 59926522 T C BRIP1 Missense_Mutation p.K159E 0.14 deleterious(0) probably_damaging(0.988) TCGA-FD-A3B3-01 17 62038715 62038715 G A SCN4A Silent p.C561C 0.04 TCGA-FD-A3B3-01 17 7721269 7721269 G C DNAH2 Silent p.L3414L 0.11 TCGA-FD-A3B3-01 17 80223620 80223620 T C CSNK1D Silent p.K43K 0.05 TCGA-FD-A3B3-01 18 21083604 21083604 C T C18orf8 Silent p.L8L 0.09 TCGA-FD-A3B3-01 18 44593394 44593394 C T KATNAL2 Silent p.D171D 0.10 TCGA-FD-A3B3-01 18 58038747 58038748 CA - MC4R Frame_Shift_Del p.C279Lfs*6 0.18 TCGA-FD-A3B3-01 18 59206358 59206358 G C CDH20 Missense_Mutation p.E504Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B3-01 19 14074411 14074411 G A RFX1 Nonsense_Mutation p.Q837* 0.22 TCGA-FD-A3B3-01 19 33355033 33355033 G A SLC7A9 Silent p.I149I 0.10 TCGA-FD-A3B3-01 19 35769607 35769607 G A USF2 Missense_Mutation p.R245Q 0.15 deleterious(0) possibly_damaging(0.902) TCGA-FD-A3B3-01 19 39281455 39281455 G A LGALS7B Silent p.E74E 0.14 TCGA-FD-A3B3-01 19 42224859 42224859 A T CEACAM5 Missense_Mutation p.I597F 0.15 deleterious(0.02) possibly_damaging(0.8) TCGA-FD-A3B3-01 19 43372233 43372233 C G PSG1 Silent p.S421S 0.10 TCGA-FD-A3B3-01 19 43372318 43372318 A G PSG1 Missense_Mutation p.V393A 0.10 tolerated(0.98) benign(0.001) TCGA-FD-A3B3-01 19 43372335 43372335 C A PSG1 Missense_Mutation p.K387N 0.11 tolerated(0.82) benign(0.005) TCGA-FD-A3B3-01 19 49934671 49934671 G C SLC17A7 Silent p.V395V 0.18 TCGA-FD-A3B3-01 19 49965942 49965942 G T ALDH16A1 Missense_Mutation p.G343V 0.20 deleterious(0) probably_damaging(0.979) TCGA-FD-A3B3-01 19 50303343 50303343 G A AP2A1 Missense_Mutation p.R464H 0.23 deleterious(0.01) probably_damaging(1) TCGA-FD-A3B3-01 19 50549435 50549435 C G ZNF473 Missense_Mutation p.Q579E 0.12 deleterious(0.02) benign(0.149) TCGA-FD-A3B3-01 19 52376173 52376173 C G ZNF577 Missense_Mutation p.R357T 0.05 tolerated(0.15) benign(0) TCGA-FD-A3B3-01 19 52658463 52658463 G A ZNF836 Nonsense_Mutation p.Q825* 0.16 TCGA-FD-A3B3-01 19 53958025 53958025 G A ZNF761 RNA 0.19 TCGA-FD-A3B3-01 19 55967807 55967807 G C ISOC2 Missense_Mutation p.S16C 0.10 deleterious(0.02) benign(0.303) TCGA-FD-A3B3-01 19 7917998 7917998 G C EVI5L Missense_Mutation p.Q338H 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A3B3-01 1 11888677 11888677 G A CLCN6 Missense_Mutation p.V373I 0.05 tolerated(0.48) benign(0.016) TCGA-FD-A3B3-01 1 120436733 120436733 C A ADAM30 Nonsense_Mutation p.E743* 0.05 TCGA-FD-A3B3-01 1 12371682 12371682 T C VPS13D Silent p.H2274H 0.11 TCGA-FD-A3B3-01 1 12704629 12704629 T G AADACL4 Missense_Mutation p.W22G 0.09 tolerated(0.1) probably_damaging(0.984) TCGA-FD-A3B3-01 1 152282624 152282624 C G FLG Missense_Mutation p.E1580Q 0.12 possibly_damaging(0.728) TCGA-FD-A3B3-01 1 152285731 152285731 G A FLG Missense_Mutation p.S544F 0.11 probably_damaging(0.958) TCGA-FD-A3B3-01 1 173795890 173795890 G C DARS2 Missense_Mutation p.E65Q 0.09 tolerated(0.1) benign(0.016) TCGA-FD-A3B3-01 1 207639892 207639892 C T CR2 Missense_Mutation p.P27L 0.08 deleterious(0) probably_damaging(0.986) TCGA-FD-A3B3-01 1 220955233 220955233 G A MARC2 Missense_Mutation p.R333Q 0.08 tolerated(0.37) benign(0.023) TCGA-FD-A3B3-01 1 249144438 249144438 G A ZNF692 Nonsense_Mutation p.Q516* 0.10 TCGA-FD-A3B3-01 1 27057947 27057947 C T ARID1A Missense_Mutation p.S552L 0.13 benign(0.307) TCGA-FD-A3B3-01 1 27057988 27057988 C T ARID1A Nonsense_Mutation p.Q566* 0.13 TCGA-FD-A3B3-01 1 34164482 34164482 C T CSMD2 Missense_Mutation p.E1226K 0.13 tolerated(0.15) benign(0.008) TCGA-FD-A3B3-01 1 34166205 34166205 C T CSMD2 Silent p.V1175V 0.12 TCGA-FD-A3B3-01 1 37947335 37947335 C T ZC3H12A Silent p.I239I 0.13 TCGA-FD-A3B3-01 1 51912718 51912718 T C EPS15 Silent p.K237K 0.09 TCGA-FD-A3B3-01 1 54059901 54059901 C G GLIS1 Missense_Mutation p.K225N 0.12 deleterious(0) probably_damaging(0.994) TCGA-FD-A3B3-01 1 55331117 55331117 C T DHCR24 Silent p.L293L 0.12 TCGA-FD-A3B3-01 1 75036915 75036915 C T C1orf173 Silent p.A1493A 0.08 TCGA-FD-A3B3-01 20 21312985 21312985 C G XRN2 Missense_Mutation p.F255L 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 20 43058327 43058327 C T HNF4A 3'UTR 0.13 TCGA-FD-A3B3-01 20 61873940 61873941 AG - NKAIN4 Frame_Shift_Del p.Y190Pfs*4 0.13 TCGA-FD-A3B3-01 21 36421143 36421143 C G RUNX1 Missense_Mutation p.M18I 0.03 tolerated_low_confidence(0.48) benign(0.001) TCGA-FD-A3B3-01 21 44272389 44272389 G A WDR4 Missense_Mutation p.R341C 0.13 tolerated(0.09) benign(0.008) TCGA-FD-A3B3-01 21 44274683 44274683 G C WDR4 Silent p.L260L 0.10 TCGA-FD-A3B3-01 21 47678906 47678906 C G MCM3AP Missense_Mutation p.Q1227H 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-FD-A3B3-01 22 20458068 20458068 G A RIMBP3 Silent p.F1078F 0.09 TCGA-FD-A3B3-01 22 21354354 21354354 C G THAP7 Missense_Mutation p.D249H 0.22 deleterious(0) possibly_damaging(0.896) TCGA-FD-A3B3-01 22 34046621 34046621 G A LARGE Missense_Mutation p.S47F 0.08 tolerated_low_confidence(0.08) benign(0.071) TCGA-FD-A3B3-01 22 44068181 44068181 C G EFCAB6 Missense_Mutation p.R475T 0.10 tolerated(0.21) benign(0.012) TCGA-FD-A3B3-01 2 103130649 103130649 C T SLC9A4 Nonsense_Mutation p.Q554* 0.12 TCGA-FD-A3B3-01 2 11348013 11348013 T C ROCK2 Missense_Mutation p.I796M 0.05 deleterious(0.03) benign(0.011) TCGA-FD-A3B3-01 2 127447889 127447889 T A GYPC Splice_Site p.X36_splice 0.07 TCGA-FD-A3B3-01 2 141215109 141215109 G T LRP1B Missense_Mutation p.A3246E 0.12 possibly_damaging(0.587) TCGA-FD-A3B3-01 2 152321463 152321463 C T RIF1 Missense_Mutation p.S1810L 0.14 tolerated_low_confidence(0.12) benign(0.008) TCGA-FD-A3B3-01 2 152484043 152484043 C G NEB Missense_Mutation p.Q3379H 0.06 probably_damaging(0.991) TCGA-FD-A3B3-01 2 173879313 173879313 G A RAPGEF4 Missense_Mutation p.E594K 0.11 tolerated(0.33) possibly_damaging(0.543) TCGA-FD-A3B3-01 2 174047626 174047626 A G MLTK Missense_Mutation p.R98G 0.14 deleterious(0.04) benign(0.226) TCGA-FD-A3B3-01 2 179343232 179343232 C G FKBP7 5'UTR 0.10 TCGA-FD-A3B3-01 2 1812936 1812936 C A MYT1L Missense_Mutation p.L1026F 0.09 deleterious(0.02) benign(0.059) TCGA-FD-A3B3-01 2 189931119 189931119 T C COL5A2 Silent p.E520E 0.05 TCGA-FD-A3B3-01 2 192818461 192818461 A T TMEFF2 Silent p.A324A 0.16 TCGA-FD-A3B3-01 2 216259329 216259329 C T FN1 Missense_Mutation p.G1240S 0.05 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 2 232263313 232263313 C T B3GNT7 Missense_Mutation p.P295S 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 2 234098579 234098579 C T INPP5D Silent p.S802S 0.09 TCGA-FD-A3B3-01 2 242035456 242035456 G A MTERFD2 Missense_Mutation p.A368V 0.07 tolerated_low_confidence(0.09) unknown(0) TCGA-FD-A3B3-01 2 26750716 26750716 T C OTOF Missense_Mutation p.K71E 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-FD-A3B3-01 2 27279587 27279587 G A AGBL5 Missense_Mutation p.D488N 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B3-01 2 28081337 28081337 C T RBKS Missense_Mutation p.R64Q 0.08 deleterious(0.01) possibly_damaging(0.834) TCGA-FD-A3B3-01 2 95513772 95513772 G A RNU6-1320P 5'Flank 0.04 TCGA-FD-A3B3-01 2 96781355 96781355 G A ADRA2B Silent p.I178I 0.08 TCGA-FD-A3B3-01 3 108133162 108133162 G C MYH15 Silent p.S1374S 0.22 TCGA-FD-A3B3-01 3 121137304 121137304 G T STXBP5L Missense_Mutation p.R1140L 0.05 tolerated(0.06) possibly_damaging(0.778) TCGA-FD-A3B3-01 3 129695896 129695896 G T TRH Missense_Mutation p.G189V 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 3 143691456 143691456 G C C3orf58 Silent p.A94A 0.08 TCGA-FD-A3B3-01 3 62484936 62484936 T C CADPS Silent p.V869V 0.11 TCGA-FD-A3B3-01 3 77645844 77645844 T A ROBO2 Missense_Mutation p.L949M 0.09 tolerated(0.1) possibly_damaging(0.665) TCGA-FD-A3B3-01 4 122591161 122591161 G C ANXA5 Missense_Mutation p.S243C 0.14 tolerated(1) benign(0.005) TCGA-FD-A3B3-01 4 52861074 52861074 G A LRRC66 Missense_Mutation p.S705F 0.05 deleterious(0) probably_damaging(1) TCGA-FD-A3B3-01 4 54280809 54280809 A C FIP1L1 Silent p.T281T 0.22 TCGA-FD-A3B3-01 4 55948801 55948801 G A KDR Nonsense_Mutation p.Q1222* 0.11 TCGA-FD-A3B3-01 4 6843914 6843914 C T KIAA0232 Nonsense_Mutation p.R118* 0.05 TCGA-FD-A3B3-01 4 72215710 72215710 T G SLC4A4 Missense_Mutation p.S157R 0.06 deleterious(0) probably_damaging(0.987) TCGA-FD-A3B3-01 4 8616129 8616129 C T CPZ Silent p.I469I 0.07 TCGA-FD-A3B3-01 5 108516587 108516587 G A FER Missense_Mutation p.E730K 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B3-01 5 131931309 131931309 C T RAD50 Nonsense_Mutation p.Q672* 0.09 TCGA-FD-A3B3-01 5 134007548 134007548 C T SEC24A Silent p.Y263Y 0.15 TCGA-FD-A3B3-01 5 140175779 140175779 C A PCDHA2 Missense_Mutation p.D410E 0.11 tolerated_low_confidence(0.15) benign(0.042) TCGA-FD-A3B3-01 5 140515575 140515575 G C PCDHB5 Missense_Mutation p.D187H 0.12 deleterious_low_confidence(0.01) benign(0.169) TCGA-FD-A3B3-01 5 141008783 141008783 C T HDAC3 Silent p.T189T 0.08 TCGA-FD-A3B3-01 5 153144153 153144153 C A GRIA1 Nonsense_Mutation p.Y671* 0.08 TCGA-FD-A3B3-01 5 2755233 2755233 G A C5orf38 3'UTR 0.29 TCGA-FD-A3B3-01 5 32229905 32229905 G A MTMR12 Silent p.F741F 0.23 TCGA-FD-A3B3-01 5 32230145 32230145 C T MTMR12 Silent p.L661L 0.05 TCGA-FD-A3B3-01 5 41929974 41929974 G A FBXO4 Missense_Mutation p.E201K 0.25 tolerated(0.46) benign(0.001) TCGA-FD-A3B3-01 5 5186206 5186206 G A ADAMTS16 Missense_Mutation p.D269N 0.26 deleterious(0) probably_damaging(0.992) TCGA-FD-A3B3-01 5 7895909 7895909 C T MTRR Silent p.I567I 0.32 TCGA-FD-A3B3-01 5 86700789 86700789 C G CCNH Missense_Mutation p.L187F 0.08 deleterious(0.01) benign(0.409) TCGA-FD-A3B3-01 5 90106693 90106693 G A GPR98 Missense_Mutation p.D5206N 0.09 possibly_damaging(0.811) TCGA-FD-A3B3-01 6 101110370 101110370 C G ASCC3 Missense_Mutation p.D777H 0.10 tolerated(0.55) possibly_damaging(0.695) TCGA-FD-A3B3-01 6 12163852 12163852 G A HIVEP1 Missense_Mutation p.G2439S 0.27 tolerated(0.66) benign(0.117) TCGA-FD-A3B3-01 6 12164328 12164328 C T HIVEP1 Silent p.T2597T 0.07 TCGA-FD-A3B3-01 6 129674484 129674484 G C LAMA2 Missense_Mutation p.E1567Q 0.05 tolerated(0.59) benign(0.043) TCGA-FD-A3B3-01 6 158296183 158296183 C T SNX9 Missense_Mutation p.S92L 0.10 tolerated(0.27) benign(0.002) TCGA-FD-A3B3-01 6 161455436 161455436 C T MAP3K4 Nonsense_Mutation p.Q100* 0.09 TCGA-FD-A3B3-01 6 170592161 170592161 G A DLL1 Missense_Mutation p.S694L 0.14 deleterious(0.03) benign(0.126) TCGA-FD-A3B3-01 6 28219395 28219395 C T ZKSCAN4 Missense_Mutation p.E122K 0.08 deleterious(0) possibly_damaging(0.805) TCGA-FD-A3B3-01 6 30673284 30673284 G C MDC1 Missense_Mutation p.Q1226E 0.19 tolerated(0.12) benign(0) TCGA-FD-A3B3-01 6 31122287 31122287 G A CCHCR1 Silent p.L263L 0.04 TCGA-FD-A3B3-01 6 41029212 41029212 G A APOBEC2 Missense_Mutation p.E93K 0.18 tolerated(0.2) probably_damaging(0.983) TCGA-FD-A3B3-01 6 44797554 44797554 C G SUPT3H Nonstop_Mutation p.*329Sext*17 0.12 TCGA-FD-A3B3-01 7 100682288 100682288 G C MUC17 Missense_Mutation p.E2531Q 0.12 probably_damaging(0.954) TCGA-FD-A3B3-01 7 124503417 124503417 G A POT1 Missense_Mutation p.S178L 0.08 deleterious(0.03) possibly_damaging(0.624) TCGA-FD-A3B3-01 7 127669984 127669984 G C LRRC4 Missense_Mutation p.S237C 0.15 deleterious(0) probably_damaging(0.979) TCGA-FD-A3B3-01 7 128641272 128641272 G A TNPO3 Missense_Mutation p.S238L 0.10 deleterious(0.04) benign(0.23) TCGA-FD-A3B3-01 7 138312990 138312990 C T SVOPL Missense_Mutation p.G328R 0.10 tolerated(0.24) benign(0.001) TCGA-FD-A3B3-01 7 142567711 142567711 G A EPHB6 Missense_Mutation p.E867K 0.15 deleterious(0) benign(0.142) TCGA-FD-A3B3-01 7 150174891 150174891 C A GIMAP8 3'UTR 0.14 TCGA-FD-A3B3-01 7 150558223 150558223 C G AOC1 Missense_Mutation p.R728G 0.10 tolerated(0.05) possibly_damaging(0.631) TCGA-FD-A3B3-01 7 150878047 150878047 G A ASB10 Silent p.V361V 0.25 TCGA-FD-A3B3-01 7 36194706 36194706 G T EEPD1 Missense_Mutation p.R258M 0.26 deleterious(0) benign(0.285) TCGA-FD-A3B3-01 7 47924229 47924229 G C PKD1L1 Missense_Mutation p.Q1078E 0.14 tolerated(0.1) benign(0.406) TCGA-FD-A3B3-01 7 5944726 5944726 A G CCZ1 Missense_Mutation p.Y175C 0.10 deleterious(0) probably_damaging(0.992) TCGA-FD-A3B3-01 7 72856883 72856883 C G BAZ1B Missense_Mutation p.R1365S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A3B3-01 7 83277885 83277885 C T SEMA3E 5'UTR 0.21 TCGA-FD-A3B3-01 7 99264653 99264653 G A CYP3A5 Silent p.I118I 0.12 TCGA-FD-A3B3-01 8 139268995 139268995 T A FAM135B Missense_Mutation p.D102V 0.18 deleterious(0) benign(0.273) TCGA-FD-A3B3-01 8 144351566 144351566 G A GLI4 5'UTR 0.09 TCGA-FD-A3B3-01 8 30694583 30694583 G C TEX15 Missense_Mutation p.P2690A 0.09 tolerated(0.1) benign(0.177) TCGA-FD-A3B3-01 8 72181972 72181972 C A EYA1 Intron 0.13 TCGA-FD-A3B3-01 8 81577165 81577165 G C ZNF704 Missense_Mutation p.P271R 0.04 tolerated(0.15) benign(0.093) TCGA-FD-A3B3-01 8 89130948 89130948 C A MMP16 Missense_Mutation p.Q284H 0.14 deleterious(0.02) possibly_damaging(0.849) TCGA-FD-A3B3-01 8 99761532 99761532 G C STK3 Nonsense_Mutation p.S136* 0.15 TCGA-FD-A3B3-01 9 100082448 100082448 G C CCDC180 Missense_Mutation p.E418Q 0.22 tolerated(0.09) benign(0.437) TCGA-FD-A3B3-01 9 113194246 113194246 A G SVEP1 Missense_Mutation p.Y1768H 0.06 probably_damaging(1) TCGA-FD-A3B3-01 9 130868072 130868072 G A SLC25A25 Missense_Mutation p.G271E 0.16 deleterious(0) probably_damaging(0.995) TCGA-FD-A3B3-01 9 13147624 13147624 C T MPDZ Missense_Mutation p.E1222K 0.11 deleterious(0) probably_damaging(0.984) TCGA-FD-A3B3-01 9 139262242 139262242 G A CARD9 Silent p.A372A 0.17 TCGA-FD-A3B3-01 9 32544000 32544000 C T TOPORS Missense_Mutation p.D175N 0.15 tolerated(0.16) benign(0.443) TCGA-FD-A3B3-01 9 97897680 97897680 C T FANCC Missense_Mutation p.S264N 0.20 tolerated(0.5) benign(0.434) TCGA-FD-A3B3-01 X 106221416 106221416 C T MORC4 Missense_Mutation p.R317K 0.13 tolerated(1) benign(0.001) TCGA-FD-A3B3-01 X 107978480 107978480 C G IRS4 Silent p.P365P 0.09 TCGA-FD-A3B3-01 X 118893487 118893487 C T SOWAHD Missense_Mutation p.S286L 0.17 tolerated(0.31) benign(0.011) TCGA-FD-A3B3-01 X 129338867 129338867 T C ZNF280C 3'UTR 0.08 TCGA-FD-A3B3-01 X 134993401 134993401 C A SAGE1 Missense_Mutation p.Q686K 0.07 tolerated(0.44) possibly_damaging(0.793) TCGA-FD-A3B3-01 X 135292247 135292247 C G FHL1 3'UTR 0.07 TCGA-FD-A3B3-01 X 13790901 13790901 C T GPM6B 3'UTR 0.47 TCGA-FD-A3B3-01 X 150345317 150345317 G C GPR50 Missense_Mutation p.D42H 0.07 deleterious(0) probably_damaging(0.939) TCGA-FD-A3B3-01 X 153247478 153247478 G A TMEM187 5'UTR 0.09 TCGA-FD-A3B3-01 X 154743794 154743794 G T TMLHE Nonsense_Mutation p.S164* 0.05 TCGA-FD-A3B3-01 X 19973521 19973521 G A CXorf23 Missense_Mutation p.H480Y 0.10 deleterious(0) probably_damaging(0.988) TCGA-FD-A3B3-01 X 27998745 27998745 C A DCAF8L1 Missense_Mutation p.S236I 0.15 deleterious(0) possibly_damaging(0.769) TCGA-FD-A3B3-01 X 30870918 30870918 T A TAB3 Missense_Mutation p.S563C 0.06 deleterious(0) possibly_damaging(0.838) TCGA-FD-A3B3-01 X 39930940 39930940 C T BCOR Missense_Mutation p.E1001K 0.13 deleterious(0) probably_damaging(0.991) TCGA-FD-A3B3-01 X 53459194 53459194 C T HSD17B10 Splice_Site p.X119_splice 0.19 TCGA-FD-A3B3-01 X 54185903 54185903 C G FAM120C Missense_Mutation p.W282C 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A3B3-01 X 54265377 54265377 C T WNK3 Nonsense_Mutation p.W1269* 0.15 TCGA-FD-A3B3-01 X 69670626 69670626 C T DLG3 Silent p.Y326Y 0.06 TCGA-FD-A3B3-01 X 70080735 70080735 G A TEX11 Missense_Mutation p.S114L 0.10 tolerated(0.05) benign(0.124) TCGA-FD-A3B3-01 X 70346320 70346320 G A MED12 Missense_Mutation p.D891N 0.08 probably_damaging(0.949) TCGA-FD-A3B3-01 X 76937566 76937566 G C ATRX Missense_Mutation p.S1061C 0.11 benign(0.002) TCGA-FD-A3B4-01 10 75258708 75258708 G A USP54 Silent p.G1578G 0.31 TCGA-FD-A3B4-01 11 111414797 111414797 C A LAYN Missense_Mutation p.Q87K 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B4-01 11 47828670 47828670 A G NUP160 Missense_Mutation p.S800P 0.27 deleterious(0.01) benign(0.375) TCGA-FD-A3B4-01 11 56043703 56043703 C A OR5T1 Missense_Mutation p.L197I 0.29 deleterious(0.02) possibly_damaging(0.859) TCGA-FD-A3B4-01 11 56344430 56344430 G T OR5M10 Missense_Mutation p.F256L 0.30 tolerated(0.16) benign(0.042) TCGA-FD-A3B4-01 11 62476150 62476150 G C GNG3 Missense_Mutation p.V34L 0.32 deleterious(0) benign(0.364) TCGA-FD-A3B4-01 11 66062568 66062568 G T TMEM151A Missense_Mutation p.R284L 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-FD-A3B4-01 11 68359045 68359045 G A PPP6R3 Missense_Mutation p.G596E 0.14 deleterious(0.02) benign(0.363) TCGA-FD-A3B4-01 12 117204665 117204665 C T RNFT2 Missense_Mutation p.A225V 0.50 tolerated(0.16) benign(0.003) TCGA-FD-A3B4-01 12 22068813 22068813 A G ABCC9 Missense_Mutation p.V202A 0.25 deleterious(0.01) possibly_damaging(0.561) TCGA-FD-A3B4-01 12 45417649 45417649 T G DBX2 Silent p.T176T 0.34 TCGA-FD-A3B4-01 12 76424771 76424771 A - PHLDA1 Frame_Shift_Del p.Y251Tfs*5 0.22 TCGA-FD-A3B4-01 12 8051494 8051494 G A NANOGP1 RNA 0.25 TCGA-FD-A3B4-01 13 38162072 38162072 A T POSTN Missense_Mutation p.L165I 0.32 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B4-01 14 105833710 105833710 C T PACS2 Missense_Mutation p.T195M 0.34 tolerated(0.15) possibly_damaging(0.591) TCGA-FD-A3B4-01 14 76012936 76012936 G T BATF Silent p.T100T 0.30 TCGA-FD-A3B4-01 14 91044541 91044541 G T TTC7B Missense_Mutation p.A740D 0.33 deleterious(0.03) probably_damaging(0.977) TCGA-FD-A3B4-01 15 27184598 27184598 G T GABRA5 Intron 0.33 TCGA-FD-A3B4-01 15 31197966 31197966 G A FAN1 Missense_Mutation p.G367D 0.21 tolerated(0.28) benign(0.005) TCGA-FD-A3B4-01 15 35149047 35149047 C T AQR Silent p.P1468P 0.06 TCGA-FD-A3B4-01 15 54305273 54305273 C A UNC13C Missense_Mutation p.T58N 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.588) TCGA-FD-A3B4-01 16 424858 424858 T C TMEM8A Missense_Mutation p.T492A 0.16 tolerated(0.57) benign(0.005) TCGA-FD-A3B4-01 16 67314151 67314151 G A PLEKHG4 Silent p.R68R 0.25 TCGA-FD-A3B4-01 16 71004443 71004443 G T HYDIN Missense_Mutation p.Q1867K 0.29 possibly_damaging(0.828) TCGA-FD-A3B4-01 17 58260712 58260712 C T USP32 Missense_Mutation p.V1313I 0.22 tolerated(0.12) possibly_damaging(0.888) TCGA-FD-A3B4-01 18 33738800 33738800 A T ELP2 Missense_Mutation p.Q554H 0.43 tolerated(0.12) benign(0.005) TCGA-FD-A3B4-01 18 67864903 67864903 T C RTTN Missense_Mutation p.D217G 0.26 deleterious(0) probably_damaging(1) TCGA-FD-A3B4-01 18 77624205 77624205 G A KCNG2 Missense_Mutation p.A180T 0.53 deleterious(0.02) benign(0.125) TCGA-FD-A3B4-01 19 18897060 18897060 G A COMP Silent p.S432S 0.27 TCGA-FD-A3B4-01 19 35793406 35793406 G A MAG Silent p.T342T 0.35 TCGA-FD-A3B4-01 19 44008096 44008098 CTT - PHLDB3 In_Frame_Del p.E58del 0.26 TCGA-FD-A3B4-01 19 59025507 59025507 C T ZBTB45 Missense_Mutation p.E484K 0.35 deleterious(0) probably_damaging(0.991) TCGA-FD-A3B4-01 1 120306857 120306857 C A HMGCS2 Missense_Mutation p.C166F 0.28 deleterious(0) probably_damaging(1) TCGA-FD-A3B4-01 1 12785941 12785941 T G AADACL3 Missense_Mutation p.V344G 0.23 deleterious(0) benign(0.33) TCGA-FD-A3B4-01 1 152283571 152283571 C T FLG Missense_Mutation p.R1264K 0.26 benign(0.22) TCGA-FD-A3B4-01 1 210977474 210977474 C T KCNH1 Silent p.T499T 0.09 TCGA-FD-A3B4-01 1 214491427 214491427 C A SMYD2 Silent p.I118I 0.15 TCGA-FD-A3B4-01 1 216373065 216373065 C A USH2A Missense_Mutation p.A1239S 0.46 possibly_damaging(0.78) TCGA-FD-A3B4-01 1 236992566 236992566 C G MTR Missense_Mutation p.S358C 0.28 deleterious(0.01) benign(0.078) TCGA-FD-A3B4-01 1 24484264 24484264 G A IFNLR1 Nonsense_Mutation p.R307* 0.34 TCGA-FD-A3B4-01 1 6184072 6184072 C T CHD5 Silent p.S1545S 0.22 TCGA-FD-A3B4-01 1 95448617 95448617 G T ALG14 3'UTR 0.37 TCGA-FD-A3B4-01 20 20055897 20055897 C T C20orf26 Silent p.L146L 0.19 TCGA-FD-A3B4-01 20 31811765 31811765 C A BPIFA3 Missense_Mutation p.S92R 0.26 tolerated(0.42) possibly_damaging(0.761) TCGA-FD-A3B4-01 20 41514514 41514514 G T PTPRT Silent p.T49T 0.36 TCGA-FD-A3B4-01 20 55948637 55948637 C T RAE1 Missense_Mutation p.P250L 0.27 tolerated(0.18) possibly_damaging(0.639) TCGA-FD-A3B4-01 21 38593877 38593877 G - DSCR3 3'Flank 0.22 TCGA-FD-A3B4-01 2 108998249 108998250 - AT SULT1C4 Frame_Shift_Ins p.Q69Yfs*24 0.35 TCGA-FD-A3B4-01 2 163374588 163374588 C A KCNH7 Missense_Mutation p.V182L 0.39 tolerated(0.2) benign(0.017) TCGA-FD-A3B4-01 2 168114500 168114500 C A XIRP2 3'UTR 0.35 TCGA-FD-A3B4-01 2 179428664 179428664 C A TTN Missense_Mutation p.G27399C 0.26 TCGA-FD-A3B4-01 2 185800685 185800685 G T ZNF804A Nonsense_Mutation p.E188* 0.33 TCGA-FD-A3B4-01 2 40402404 40402404 G T SLC8A1 Missense_Mutation p.L645I 0.23 tolerated(0.49) benign(0.001) TCGA-FD-A3B4-01 2 69207922 69207922 C T GKN1 Silent p.D189D 0.23 TCGA-FD-A3B4-01 2 90249335 90249335 C A IGKV1D-43 Silent p.I97I 0.07 TCGA-FD-A3B4-01 2 90249359 90249359 T C IGKV1D-43 Silent p.F105F 0.12 TCGA-FD-A3B4-01 3 32932318 32932318 G C TRIM71 Missense_Mutation p.S541T 0.47 tolerated(0.75) benign(0.007) TCGA-FD-A3B4-01 3 33184069 33184069 C T CRTAP 3'UTR 0.67 TCGA-FD-A3B4-01 3 43618536 43618536 G T ANO10 Nonsense_Mutation p.Y270* 0.41 TCGA-FD-A3B4-01 3 56468890 56468890 A G ERC2 Missense_Mutation p.I49T 0.56 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B4-01 3 61989085 61989085 G T PTPRG Missense_Mutation p.A145S 0.50 deleterious(0.04) probably_damaging(0.93) TCGA-FD-A3B4-01 4 123663547 123663547 C T BBS12 Missense_Mutation p.T167I 0.34 tolerated(0.44) benign(0.072) TCGA-FD-A3B4-01 4 141334194 141334194 C A CLGN Silent p.L13L 0.28 TCGA-FD-A3B4-01 4 155487059 155487059 C T FGB Missense_Mutation p.R72W 0.26 deleterious(0) possibly_damaging(0.724) TCGA-FD-A3B4-01 4 15993957 15993957 G T PROM1 Missense_Mutation p.L609M 0.33 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B4-01 4 187630666 187630666 C T FAT1 Missense_Mutation p.A106T 0.56 probably_damaging(0.997) TCGA-FD-A3B4-01 4 56765938 56765938 G A EXOC1 Missense_Mutation p.R742Q 0.27 tolerated(1) benign(0.065) TCGA-FD-A3B4-01 5 109026216 109026216 A G MAN2A1 Missense_Mutation p.Y33C 0.21 tolerated(0.16) possibly_damaging(0.711) TCGA-FD-A3B4-01 5 140725895 140725895 G A PCDHGA3 Silent p.K765K 0.19 TCGA-FD-A3B4-01 5 140772771 140772771 C T PCDHGA8 Missense_Mutation p.P131S 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FD-A3B4-01 5 149771567 149771567 C A TCOF1 Silent p.T1115T 0.28 TCGA-FD-A3B4-01 5 160033952 160033952 C G ATP10B Missense_Mutation p.A994P 0.26 tolerated(0.22) possibly_damaging(0.633) TCGA-FD-A3B4-01 5 178994559 178994560 TT - RUFY1 Frame_Shift_Del p.L234Kfs*5 0.14 TCGA-FD-A3B4-01 5 82818114 82818114 G T VCAN Missense_Mutation p.R1330I 0.27 tolerated(0.09) benign(0.209) TCGA-FD-A3B4-01 6 10956472 10956472 T A SYCP2L Nonsense_Mutation p.Y720* 0.25 TCGA-FD-A3B4-01 6 132030144 132030144 G T CTAGE9 Missense_Mutation p.L672I 0.44 tolerated(0.14) benign(0.167) TCGA-FD-A3B4-01 6 168434587 168434587 G A KIF25 Missense_Mutation p.G65R 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B4-01 6 29408136 29408136 C A OR10C1 Missense_Mutation p.A115E 0.34 deleterious(0) probably_damaging(0.997) TCGA-FD-A3B4-01 6 43543609 43543609 G A XPO5 5'UTR 0.23 TCGA-FD-A3B4-01 6 84233295 84233295 C T PRSS35 Silent p.L45L 0.28 TCGA-FD-A3B4-01 7 133876486 133876486 G A LRGUK Missense_Mutation p.D472N 0.25 tolerated(0.08) benign(0.168) TCGA-FD-A3B4-01 7 133876489 133876489 G T LRGUK Nonsense_Mutation p.E473* 0.23 TCGA-FD-A3B4-01 7 143807132 143807132 G T OR2A2 Missense_Mutation p.A153S 0.40 tolerated(0.19) benign(0.013) TCGA-FD-A3B4-01 7 37916593 37916593 C G NME8 Silent p.L326L 0.18 TCGA-FD-A3B4-01 7 43547627 43547627 C A HECW1 Missense_Mutation p.R1255S 0.25 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A3B4-01 7 87165842 87165842 C A ABCB1 Missense_Mutation p.D805Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-FD-A3B4-01 7 95034713 95034713 C A PON2 Missense_Mutation p.V332L 0.15 deleterious(0) benign(0.189) TCGA-FD-A3B4-01 8 10470140 10470140 C A RP1L1 Missense_Mutation p.G490W 0.12 benign(0.062) TCGA-FD-A3B4-01 X 119249648 119249648 G T RHOXF1 Missense_Mutation p.P42Q 0.16 tolerated(0.38) probably_damaging(0.937) TCGA-FD-A3B4-01 X 119387328 119387328 A T ZBTB33 Missense_Mutation p.N20Y 0.40 deleterious(0.01) possibly_damaging(0.498) TCGA-FD-A3B4-01 X 125299664 125299664 T A DCAF12L2 Missense_Mutation p.R82W 0.34 deleterious(0) possibly_damaging(0.566) TCGA-FD-A3B4-01 X 151900075 151900075 G T MAGEA12 Silent p.P242P 0.20 TCGA-FD-A3B4-01 X 153648506 153648506 G T TAZ Intron 0.20 TCGA-FD-A3B4-01 X 154157894 154157894 C A F8 Missense_Mutation p.D1391Y 0.40 tolerated(0.21) benign(0.139) TCGA-FD-A3B4-01 X 17744475 17744475 G T NHS Missense_Mutation p.C729F 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A3B4-01 X 46433887 46433887 C T CHST7 Missense_Mutation p.P174L 0.14 deleterious_low_confidence(0.03) benign(0.007) TCGA-FD-A3B4-01 X 48631819 48631819 C A GLOD5 Missense_Mutation p.L151M 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3B4-01 X 48687714 48687714 C G ERAS Missense_Mutation p.L61V 0.19 deleterious(0) benign(0.392) TCGA-FD-A3B4-01 X 79973160 79973160 C A BRWD3 Missense_Mutation p.A715S 0.29 tolerated(0.18) benign(0.056) TCGA-FD-A3B5-01 10 101967090 101967090 C T CHUK Splice_Site p.X377_splice 0.10 TCGA-FD-A3B5-01 10 11308619 11308619 G A CELF2 Missense_Mutation p.M199I 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-FD-A3B5-01 10 115596920 115596920 G A DCLRE1A Nonsense_Mutation p.Q955* 0.33 TCGA-FD-A3B5-01 10 123274680 123274680 G A FGFR2 Missense_Mutation p.P414L 0.21 tolerated(0.31) probably_damaging(1) TCGA-FD-A3B5-01 10 5136590 5136590 G C AKR1C3 5'UTR 0.14 TCGA-FD-A3B5-01 10 52569778 52569778 C T A1CF Silent p.L503L 0.32 TCGA-FD-A3B5-01 10 74234899 74234899 C T MICU1 Missense_Mutation p.E298K 0.67 tolerated(0.13) benign(0.043) TCGA-FD-A3B5-01 10 84118578 84118578 G C NRG3 Missense_Mutation p.E303Q 0.28 deleterious(0.03) benign(0.444) TCGA-FD-A3B5-01 10 91061740 91061740 G T IFIT2 5'UTR 0.38 TCGA-FD-A3B5-01 10 94368903 94368903 C G KIF11 Missense_Mutation p.L172V 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 11 108196036 108196036 G A ATM Splice_Site p.X2191_splice 0.76 TCGA-FD-A3B5-01 11 108264059 108264059 G C C11orf65 Missense_Mutation p.L203V 0.10 tolerated(1) benign(0.02) TCGA-FD-A3B5-01 11 118949563 118949563 G A VPS11 Missense_Mutation p.V707M 0.60 deleterious(0.03) possibly_damaging(0.467) TCGA-FD-A3B5-01 11 124620668 124620668 G T VSIG2 Silent p.V123V 0.44 TCGA-FD-A3B5-01 11 1579452 1579452 G C DUSP8 Missense_Mutation p.S196C 0.47 deleterious(0) probably_damaging(0.954) TCGA-FD-A3B5-01 11 4510933 4510933 G A OR52K1 Missense_Mutation p.R268H 0.15 tolerated(1) benign(0.008) TCGA-FD-A3B5-01 11 56043115 56043115 A C OR5T1 Translation_Start_Site p.M1? 0.02 deleterious_low_confidence(0.02) benign(0.031) TCGA-FD-A3B5-01 11 60695125 60695125 C T TMEM132A Nonsense_Mutation p.R110* 0.07 TCGA-FD-A3B5-01 11 620354 620354 G C CDHR5 Missense_Mutation p.I274M 0.14 deleterious(0) probably_damaging(0.965) TCGA-FD-A3B5-01 11 62416037 62416037 C T INTS5 Silent p.L505L 0.15 TCGA-FD-A3B5-01 11 72945902 72945902 C T P2RY2 Missense_Mutation p.S233L 0.50 tolerated(0.07) benign(0.025) TCGA-FD-A3B5-01 11 76751660 76751660 A G B3GNT6 Silent p.L355L 0.18 TCGA-FD-A3B5-01 11 7981220 7981220 C G NLRP10 Missense_Mutation p.E647Q 0.46 deleterious(0.05) possibly_damaging(0.573) TCGA-FD-A3B5-01 11 7981650 7981650 C G NLRP10 Missense_Mutation p.E503D 0.57 tolerated(0.47) benign(0.003) TCGA-FD-A3B5-01 12 122758620 122758620 C G CLIP1 Silent p.L1352L 0.46 TCGA-FD-A3B5-01 12 133313491 133313491 C T ANKLE2 Silent p.L527L 0.39 TCGA-FD-A3B5-01 12 2973567 2973567 C T FOXM1 Silent p.V395V 0.36 TCGA-FD-A3B5-01 12 39761747 39761747 C A KIF21A Missense_Mutation p.D180Y 0.25 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 12 427453 427453 C A KDM5A Nonsense_Mutation p.E906* 0.08 TCGA-FD-A3B5-01 12 49415856 49415858 GAT - KMT2D In_Frame_Del p.I5497del 0.69 TCGA-FD-A3B5-01 12 56515546 56515546 G A ZC3H10 Silent p.S400S 0.10 TCGA-FD-A3B5-01 12 76449866 76449866 C T NAP1L1 Missense_Mutation p.E169K 0.25 tolerated(0.08) benign(0.285) TCGA-FD-A3B5-01 12 81647291 81647291 G C ACSS3 Missense_Mutation p.E613Q 0.77 tolerated(0.19) benign(0.004) TCGA-FD-A3B5-01 12 90028786 90028786 G C ATP2B1 Missense_Mutation p.Q217E 0.68 deleterious(0.05) probably_damaging(0.979) TCGA-FD-A3B5-01 13 53420246 53420246 G A PCDH8 Missense_Mutation p.R776C 0.11 deleterious(0) probably_damaging(0.983) TCGA-FD-A3B5-01 13 79945269 79945269 G A RBM26 Missense_Mutation p.R149C 0.51 deleterious(0.02) unknown(0) TCGA-FD-A3B5-01 14 105349634 105349634 G C CEP170B Missense_Mutation p.K280N 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 14 45673353 45673353 C T MIS18BP1 Missense_Mutation p.E1120K 0.39 deleterious(0) probably_damaging(0.968) TCGA-FD-A3B5-01 14 55509991 55509991 T C SOCS4 Silent p.L78L 0.41 TCGA-FD-A3B5-01 14 64457725 64457725 C G SYNE2 Missense_Mutation p.I846M 0.07 benign(0.131) TCGA-FD-A3B5-01 14 70518710 70518710 G C SLC8A3 Missense_Mutation p.F676L 0.32 tolerated(0.06) probably_damaging(0.995) TCGA-FD-A3B5-01 14 92959977 92959977 G C SLC24A4 3'UTR 0.17 TCGA-FD-A3B5-01 14 94582170 94582170 G A IFI27 Silent p.A55A 0.40 TCGA-FD-A3B5-01 15 41819472 41819472 G A RPAP1 Missense_Mutation p.R547W 0.40 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 15 42702003 42702003 G A CAPN3 Missense_Mutation p.D671N 0.48 tolerated(0.63) benign(0.008) TCGA-FD-A3B5-01 15 43552710 43552710 G A TGM5 Silent p.I26I 0.50 TCGA-FD-A3B5-01 15 76206519 76206519 C G FBXO22 Missense_Mutation p.L146V 0.30 tolerated(0.19) probably_damaging(0.994) TCGA-FD-A3B5-01 16 2012392 2012392 G C RPS2 Intron 0.20 TCGA-FD-A3B5-01 16 2142498 2142498 T A PKD1 Missense_Mutation p.Q3751L 0.37 possibly_damaging(0.771) TCGA-FD-A3B5-01 16 24372924 24372924 C T CACNG3 Nonsense_Mutation p.R230* 0.29 TCGA-FD-A3B5-01 16 28935803 28935803 C G RABEP2 Missense_Mutation p.E65D 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A3B5-01 16 3283794 3283794 C A ZNF200 5'UTR 0.26 TCGA-FD-A3B5-01 16 4790239 4790239 G A C16orf71 Missense_Mutation p.R121K 0.42 tolerated(0.37) benign(0.001) TCGA-FD-A3B5-01 16 54965196 54965196 C T IRX5 Missense_Mutation p.S29L 0.35 tolerated(0.35) benign(0.064) TCGA-FD-A3B5-01 16 56368731 56368731 C G GNAO1 Missense_Mutation p.I185M 0.34 deleterious(0) probably_damaging(0.996) TCGA-FD-A3B5-01 16 61858917 61858917 C T CDH8 Silent p.Q278Q 0.42 TCGA-FD-A3B5-01 16 731746 731746 G A JMJD8 3'UTR 0.50 TCGA-FD-A3B5-01 16 84495721 84495721 A G ATP2C2 Missense_Mutation p.N903S 0.10 tolerated(0.44) benign(0.044) TCGA-FD-A3B5-01 17 16466508 16466508 C T ZNF287 Missense_Mutation p.E223K 0.67 deleterious(0.01) probably_damaging(0.991) TCGA-FD-A3B5-01 17 37886006 37886006 C T MIEN1 Missense_Mutation p.E66K 0.36 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B5-01 17 40815491 40815491 C G TUBG2 Silent p.L192L 0.44 TCGA-FD-A3B5-01 17 56651579 56651579 C A TEX14 Nonsense_Mutation p.E1164* 0.29 TCGA-FD-A3B5-01 17 61611651 61611651 C G KCNH6 Missense_Mutation p.I360M 0.25 deleterious(0.01) possibly_damaging(0.688) TCGA-FD-A3B5-01 17 74732295 74732295 C A SRSF2 Missense_Mutation p.R205L 0.25 tolerated(0.21) unknown(0) TCGA-FD-A3B5-01 17 78225191 78225191 G T SLC26A11 Nonsense_Mutation p.E574* 0.22 TCGA-FD-A3B5-01 18 20735805 20735805 G A CABLES1 Intron 0.10 TCGA-FD-A3B5-01 18 2891297 2891297 C T EMILIN2 Missense_Mutation p.S391L 0.42 tolerated(0.2) benign(0.15) TCGA-FD-A3B5-01 18 43796552 43796552 G T C18orf25 Nonsense_Mutation p.E236* 0.33 TCGA-FD-A3B5-01 19 14159887 14159887 G T IL27RA Missense_Mutation p.E412D 0.07 deleterious(0.02) possibly_damaging(0.501) TCGA-FD-A3B5-01 19 40521762 40521762 G A ZNF546 3'UTR 0.31 TCGA-FD-A3B5-01 19 42222226 42222226 G A CEACAM5 Missense_Mutation p.G473R 0.05 deleterious(0.02) probably_damaging(0.951) TCGA-FD-A3B5-01 19 45496010 45496010 C T CLPTM1 Missense_Mutation p.T622M 0.08 tolerated(0.1) possibly_damaging(0.791) TCGA-FD-A3B5-01 19 45541121 45541121 C G RELB 3'UTR 0.29 TCGA-FD-A3B5-01 19 50102618 50102618 G A PRR12 Silent p.S1256S 0.11 TCGA-FD-A3B5-01 19 52537344 52537344 C T ZNF432 Missense_Mutation p.V530I 0.28 tolerated(0.39) benign(0.373) TCGA-FD-A3B5-01 19 53911005 53911005 G C ZNF765 Missense_Mutation p.R66T 0.40 tolerated(1) benign(0.001) TCGA-FD-A3B5-01 19 54657318 54657318 C A CNOT3 Intron 0.40 TCGA-FD-A3B5-01 19 54783434 54783434 G T LILRB2 Missense_Mutation p.L142I 0.13 deleterious(0.02) benign(0.285) TCGA-FD-A3B5-01 19 55716720 55716720 G C PTPRH Missense_Mutation p.S198C 0.04 unknown(0) TCGA-FD-A3B5-01 19 57089446 57089446 C T ZNF470 Missense_Mutation p.A550V 0.32 deleterious(0.01) benign(0.062) TCGA-FD-A3B5-01 19 6476930 6476930 C T DENND1C Missense_Mutation p.G206R 0.15 tolerated(0.58) probably_damaging(0.995) TCGA-FD-A3B5-01 1 100534050 100534050 G C HIAT1 Missense_Mutation p.D243H 0.30 deleterious(0) possibly_damaging(0.682) TCGA-FD-A3B5-01 1 103431095 103431095 C T COL11A1 Missense_Mutation p.G955E 0.41 unknown(0) TCGA-FD-A3B5-01 1 109824459 109824459 C T PSRC1 Missense_Mutation p.E101K 0.47 tolerated(0.19) benign(0.165) TCGA-FD-A3B5-01 1 154180113 154180113 C T C1orf43 Missense_Mutation p.R193Q 0.25 tolerated(0.16) benign(0.033) TCGA-FD-A3B5-01 1 159015192 159015192 G A IFI16 Missense_Mutation p.E479K 0.17 tolerated(0.81) benign(0.008) TCGA-FD-A3B5-01 1 163131761 163131761 G C RGS5 Missense_Mutation p.S54W 0.11 deleterious(0.01) possibly_damaging(0.656) TCGA-FD-A3B5-01 1 166818581 166818581 G A POGK Silent p.K255K 0.59 TCGA-FD-A3B5-01 1 167365643 167365643 G C POU2F1 Missense_Mutation p.E370Q 0.25 tolerated(0.12) unknown(0) TCGA-FD-A3B5-01 1 170688895 170688895 G T PRRX1 Missense_Mutation p.K90N 0.23 tolerated(0.15) probably_damaging(0.966) TCGA-FD-A3B5-01 1 170688965 170688965 G A PRRX1 Missense_Mutation p.E114K 0.20 tolerated(0.05) probably_damaging(0.987) TCGA-FD-A3B5-01 1 179965793 179965793 G A CEP350 Missense_Mutation p.M167I 0.56 benign(0.002) TCGA-FD-A3B5-01 1 182849629 182849630 - A DHX9 Intron 0.13 TCGA-FD-A3B5-01 1 204955232 204955232 C T NFASC Intron 0.12 TCGA-FD-A3B5-01 1 227307535 227307535 C T CDC42BPA Silent p.T539T 0.14 TCGA-FD-A3B5-01 1 228594276 228594276 G A TRIM11 5'UTR 0.65 TCGA-FD-A3B5-01 1 235907429 235907429 C G LYST Missense_Mutation p.L2667F 0.09 tolerated(0.06) probably_damaging(0.996) TCGA-FD-A3B5-01 1 25810749 25810749 G A TMEM57 Missense_Mutation p.E433K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A3B5-01 1 38265863 38265863 G T MANEAL Missense_Mutation p.Q454H 0.11 tolerated(0.07) possibly_damaging(0.773) TCGA-FD-A3B5-01 1 38332195 38332195 T A INPP5B Silent p.P774P 0.11 TCGA-FD-A3B5-01 1 45271785 45271785 C T TCTEX1D4 Missense_Mutation p.V186M 0.16 tolerated(0.18) probably_damaging(0.986) TCGA-FD-A3B5-01 1 45480045 45480045 A G UROD Intron 0.12 TCGA-FD-A3B5-01 1 47882237 47882237 C G FOXE3 Missense_Mutation p.L84V 0.29 deleterious(0.01) possibly_damaging(0.556) TCGA-FD-A3B5-01 1 64605962 64605962 C T ROR1 Nonsense_Mutation p.Q261* 0.53 TCGA-FD-A3B5-01 1 897016 897016 G A KLHL17 Missense_Mutation p.M125I 0.76 deleterious(0.01) possibly_damaging(0.519) TCGA-FD-A3B5-01 1 93602319 93602319 G C MTF2 Missense_Mutation p.R506T 0.37 tolerated(0.13) benign(0.112) TCGA-FD-A3B5-01 20 43139962 43139962 G C SERINC3 Missense_Mutation p.S148C 0.46 deleterious(0) probably_damaging(0.971) TCGA-FD-A3B5-01 20 45132865 45132865 G C ZNF334 Missense_Mutation p.Q77E 0.38 deleterious(0.04) benign(0.001) TCGA-FD-A3B5-01 20 55108402 55108402 G T FAM209B Missense_Mutation p.W2L 0.29 tolerated(0.63) possibly_damaging(0.803) TCGA-FD-A3B5-01 21 22881192 22881192 G T NCAM2 Missense_Mutation p.G700W 0.27 deleterious(0) probably_damaging(0.995) TCGA-FD-A3B5-01 22 24720319 24720319 C G SPECC1L Missense_Mutation p.I690M 0.38 deleterious(0) probably_damaging(0.927) TCGA-FD-A3B5-01 22 38084997 38084997 G A NOL12 Missense_Mutation p.E127K 0.28 tolerated(0.6) benign(0.044) TCGA-FD-A3B5-01 22 39918553 39918553 G A ATF4 Silent p.L334L 0.12 TCGA-FD-A3B5-01 22 43831096 43831096 G T MPPED1 Missense_Mutation p.G123W 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 22 50553619 50553620 - G MOV10L1 Frame_Shift_Ins p.L404Afs*15 0.34 TCGA-FD-A3B5-01 2 166908238 166908238 G C SCN1A Missense_Mutation p.Q319E 0.19 tolerated(0.91) benign(0) TCGA-FD-A3B5-01 2 178362475 178362475 A G AGPS Silent p.K448K 0.64 TCGA-FD-A3B5-01 2 17941319 17941319 G A GEN1 Missense_Mutation p.E37K 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 2 183868005 183868005 G C NCKAP1 Missense_Mutation p.L96V 0.16 deleterious(0.01) benign(0.172) TCGA-FD-A3B5-01 2 219549924 219549924 G C STK36 Missense_Mutation p.Q451H 0.28 deleterious(0.05) possibly_damaging(0.885) TCGA-FD-A3B5-01 2 233409214 233409214 C G CHRNG Silent p.L391L 0.69 TCGA-FD-A3B5-01 2 44548554 44548554 C G PREPL Missense_Mutation p.E709Q 0.63 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3B5-01 2 63283479 63283479 G A OTX1 3'UTR 0.08 TCGA-FD-A3B5-01 2 96933152 96933152 C T CIAO1 Missense_Mutation p.S78F 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B5-01 3 111685499 111685499 G C PHLDB2 Missense_Mutation p.E1039D 0.54 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B5-01 3 112724558 112724558 C G C3orf17 Missense_Mutation p.G510A 0.20 tolerated(0.15) benign(0.075) TCGA-FD-A3B5-01 3 113499971 113499971 G C ATP6V1A Missense_Mutation p.E53Q 0.50 deleterious(0) possibly_damaging(0.894) TCGA-FD-A3B5-01 3 119327641 119327641 G C PLA1A Missense_Mutation p.W100C 0.24 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 3 124449224 124449224 G A UMPS 5'UTR 0.11 TCGA-FD-A3B5-01 3 148601417 148601417 G A CPA3 Missense_Mutation p.D266N 0.05 tolerated(1) benign(0) TCGA-FD-A3B5-01 3 15283750 15283750 T G CAPN7 Silent p.V618V 0.13 TCGA-FD-A3B5-01 3 169558008 169558008 C A LRRC31 Missense_Mutation p.C474F 0.14 tolerated(0.38) benign(0.018) TCGA-FD-A3B5-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-FD-A3B5-01 3 179458119 179458119 G A USP13 Missense_Mutation p.D447N 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 3 186289895 186289895 A G DNAJB11 Missense_Mutation p.Y27C 0.59 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 3 194309273 194309273 C G TMEM44 Silent p.L471L 0.51 TCGA-FD-A3B5-01 3 44776196 44776196 C T ZNF501 Nonsense_Mutation p.Q95* 0.19 TCGA-FD-A3B5-01 3 65367599 65367599 T C MAGI1 Missense_Mutation p.K885R 0.44 tolerated(1) probably_damaging(0.986) TCGA-FD-A3B5-01 4 141327104 141327104 C G CLGN Missense_Mutation p.L137F 0.14 tolerated(0.09) benign(0.332) TCGA-FD-A3B5-01 4 146824287 146824287 C A ZNF827 Nonsense_Mutation p.E42* 0.11 TCGA-FD-A3B5-01 4 149073667 149073667 A G NR3C2 Silent p.H821H 0.07 TCGA-FD-A3B5-01 4 151141909 151141909 G T DCLK2 Missense_Mutation p.D388Y 0.32 tolerated(0.08) benign(0.004) TCGA-FD-A3B5-01 4 38091654 38091654 C T TBC1D1 Missense_Mutation p.R718C 0.24 deleterious(0.02) benign(0.028) TCGA-FD-A3B5-01 4 46979532 46979532 G A GABRA4 Missense_Mutation p.P130L 0.48 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 4 5633750 5633750 C G EVC2 Missense_Mutation p.E494Q 0.15 tolerated(0.06) benign(0.372) TCGA-FD-A3B5-01 5 118814608 118814608 C G HSD17B4 Missense_Mutation p.L197V 0.34 tolerated(0.55) benign(0.046) TCGA-FD-A3B5-01 5 126883526 126883529 TTGT - PRRC1 Frame_Shift_Del p.C348Wfs*12 0.40 TCGA-FD-A3B5-01 5 140214295 140214295 C T PCDHA7 Silent p.I109I 0.12 TCGA-FD-A3B5-01 5 16067594 16067594 C T MARCH11 Missense_Mutation p.V399M 0.46 deleterious(0) probably_damaging(0.99) TCGA-FD-A3B5-01 5 169494533 169494533 A T DOCK2 Missense_Mutation p.E1496V 0.32 deleterious(0) probably_damaging(0.922) TCGA-FD-A3B5-01 5 175520235 175520235 C G FAM153B Silent p.L22L 0.12 TCGA-FD-A3B5-01 5 176812835 176812835 C T SLC34A1 Silent p.Y31Y 0.29 TCGA-FD-A3B5-01 5 70806316 70806316 G A BDP1 Missense_Mutation p.E1133K 0.24 tolerated(0.11) possibly_damaging(0.499) TCGA-FD-A3B5-01 6 128540172 128540173 AG - PTPRK Frame_Shift_Del p.F255Qfs*9 0.12 TCGA-FD-A3B5-01 6 158923390 158923390 G A TULP4 Missense_Mutation p.E899K 0.41 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FD-A3B5-01 6 33144976 33144976 G A COL11A2 Silent p.I580I 0.45 TCGA-FD-A3B5-01 6 34825934 34825934 G C UHRF1BP1 Missense_Mutation p.E601Q 0.42 tolerated(0.05) benign(0.017) TCGA-FD-A3B5-01 6 34826146 34826146 G A UHRF1BP1 Silent p.Q671Q 0.37 TCGA-FD-A3B5-01 6 34826515 34826515 G A UHRF1BP1 Silent p.L794L 0.48 TCGA-FD-A3B5-01 6 90398348 90398348 A G MDN1 Missense_Mutation p.S3735P 0.31 possibly_damaging(0.68) TCGA-FD-A3B5-01 7 100683101 100683101 A G MUC17 Missense_Mutation p.T2802A 0.22 unknown(0) TCGA-FD-A3B5-01 7 142567654 142567654 G C EPHB6 Missense_Mutation p.G848R 0.44 deleterious(0) probably_damaging(1) TCGA-FD-A3B5-01 7 151879673 151879673 G A KMT2C Missense_Mutation p.R1758C 0.33 probably_damaging(0.999) TCGA-FD-A3B5-01 7 21932046 21932046 G A DNAH11 Missense_Mutation p.E4178K 0.36 benign(0.272) TCGA-FD-A3B5-01 7 43982600 43982600 T C UBE2D4 Silent p.F56F 0.41 TCGA-FD-A3B5-01 7 44573141 44573141 C T NPC1L1 Missense_Mutation p.M766I 0.08 deleterious(0) probably_damaging(0.974) TCGA-FD-A3B5-01 7 47884664 47884664 G A PKD1L1 Silent p.L1722L 0.47 TCGA-FD-A3B5-01 7 56079478 56079478 G T PSPH Missense_Mutation p.L219M 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-FD-A3B5-01 7 6449968 6449968 C G DAGLB Missense_Mutation p.G538A 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-FD-A3B5-01 7 66273984 66273984 G A KCTD7 Missense_Mutation p.E397K 0.63 tolerated(0.26) benign(0.021) TCGA-FD-A3B5-01 7 66274059 66274059 G C KCTD7 Missense_Mutation p.E422Q 0.35 tolerated(0.31) benign(0.018) TCGA-FD-A3B5-01 7 73471787 73471787 G A ELN Intron 0.38 TCGA-FD-A3B5-01 7 938746 938746 C T ADAP1 Silent p.T340T 0.37 TCGA-FD-A3B5-01 7 97922787 97922787 C T BAIAP2L1 3'UTR 0.08 TCGA-FD-A3B5-01 7 99170613 99170613 G C ZNF655 Missense_Mutation p.K329N 0.29 tolerated(0.05) possibly_damaging(0.607) TCGA-FD-A3B5-01 7 99798542 99798542 G T STAG3 Missense_Mutation p.V671L 0.15 tolerated(0.22) benign(0.005) TCGA-FD-A3B5-01 8 103373850 103373850 G C UBR5 Missense_Mutation p.R23G 0.07 deleterious(0) possibly_damaging(0.791) TCGA-FD-A3B5-01 8 145134859 145134859 G T EXOSC4 Missense_Mutation p.R62L 0.23 tolerated(0.06) benign(0.401) TCGA-FD-A3B5-01 8 23112846 23112846 C T CHMP7 Silent p.L186L 0.41 TCGA-FD-A3B5-01 8 26227900 26227900 C T PPP2R2A Silent p.L449L 0.38 TCGA-FD-A3B5-01 8 3265577 3265577 C T CSMD1 Missense_Mutation p.A639T 0.18 benign(0.008) TCGA-FD-A3B5-01 8 69030877 69030877 C G PREX2 Nonsense_Mutation p.S1140* 0.48 TCGA-FD-A3B5-01 9 128113141 128113141 G C GAPVD1 Missense_Mutation p.E1214Q 0.04 deleterious(0.04) possibly_damaging(0.647) TCGA-FD-A3B5-01 9 136341379 136341379 G A SLC2A6 Missense_Mutation p.S181F 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A3B5-01 9 137293588 137293588 C G RXRA Missense_Mutation p.L47V 0.67 tolerated_low_confidence(0.08) benign(0.192) TCGA-FD-A3B5-01 9 84547434 84547434 G A RP11-383M4.6 Intron 0.40 TCGA-FD-A3B5-01 9 88611429 88611429 A T NAA35 Missense_Mutation p.R331S 0.67 tolerated(0.42) benign(0) TCGA-FD-A3B5-01 X 123200110 123200110 C T STAG2 Nonsense_Mutation p.Q728* 0.77 TCGA-FD-A3B5-01 X 2928167 2928167 G C ARSH Silent p.L63L 0.14 TCGA-FD-A3B5-01 X 44949073 44949073 C T KDM6A Nonsense_Mutation p.Q1212* 0.85 TCGA-FD-A3B5-01 X 48895739 48895739 A C TFE3 Missense_Mutation p.S255A 0.29 tolerated(0.07) benign(0.097) TCGA-FD-A3B5-01 X 54321194 54321194 T G WNK3 Missense_Mutation p.R495S 0.24 deleterious(0) probably_damaging(0.964) TCGA-FD-A3B5-01 X 65253367 65253367 C G VSIG4 Missense_Mutation p.D121H 0.10 deleterious(0.01) possibly_damaging(0.69) TCGA-FD-A3B6-01 10 103783474 103783474 G A C10orf76 Silent p.L180L 0.14 TCGA-FD-A3B6-01 10 106737176 106737176 C T SORCS3 Silent p.L293L 0.28 TCGA-FD-A3B6-01 10 1405318 1405318 G A ADARB2 Missense_Mutation p.R328W 0.33 deleterious(0) probably_damaging(0.958) TCGA-FD-A3B6-01 10 29840096 29840096 G A SVIL Missense_Mutation p.S86L 0.14 deleterious(0.03) benign(0.003) TCGA-FD-A3B6-01 10 29840154 29840154 G T SVIL Missense_Mutation p.L67I 0.22 tolerated(0.3) benign(0.005) TCGA-FD-A3B6-01 10 34601309 34601309 G C PARD3 Intron 0.03 TCGA-FD-A3B6-01 10 68687354 68687354 G C LRRTM3 Missense_Mutation p.R227T 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B6-01 10 71265936 71265936 C G TSPAN15 Missense_Mutation p.I225M 0.57 deleterious(0.02) benign(0.05) TCGA-FD-A3B6-01 10 71562459 71562459 C T COL13A1 Nonsense_Mutation p.Q94* 0.07 TCGA-FD-A3B6-01 10 75673458 75673459 GT - PLAU Frame_Shift_Del p.C209Wfs*19 0.45 TCGA-FD-A3B6-01 10 78729810 78729810 G A KCNMA1 Missense_Mutation p.P703L 0.05 tolerated(0.17) benign(0.064) TCGA-FD-A3B6-01 10 79552080 79552080 G A DLG5 3'UTR 0.15 TCGA-FD-A3B6-01 10 87484416 87484416 G T GRID1 Silent p.I517I 0.15 TCGA-FD-A3B6-01 10 93749199 93749199 C A BTAF1 Missense_Mutation p.Q906K 0.18 tolerated(0.21) benign(0.002) TCGA-FD-A3B6-01 10 97607164 97607164 C G ENTPD1 Intron 0.10 TCGA-FD-A3B6-01 11 101857622 101857622 G T KIAA1377 Nonsense_Mutation p.E1032* 0.27 TCGA-FD-A3B6-01 11 111680410 111680410 C G ALG9 Missense_Mutation p.E393Q 0.16 tolerated(0.06) possibly_damaging(0.628) TCGA-FD-A3B6-01 11 117391942 117391942 G T DSCAML1 Silent p.L432L 0.25 TCGA-FD-A3B6-01 11 118374297 118374298 - CCTC KMT2A Frame_Shift_Ins p.E2566Lfs*2 0.32 TCGA-FD-A3B6-01 11 128354930 128354930 G A ETS1 Missense_Mutation p.S217L 0.14 tolerated(0.14) benign(0.006) TCGA-FD-A3B6-01 11 128842725 128842725 G A ARHGAP32 Nonsense_Mutation p.Q1212* 0.29 TCGA-FD-A3B6-01 11 133814125 133814125 G A IGSF9B Silent p.L133L 0.22 TCGA-FD-A3B6-01 11 134162074 134162074 G A GLB1L3 Missense_Mutation p.E260K 0.35 tolerated(1) benign(0.01) TCGA-FD-A3B6-01 11 18362845 18362845 G C GTF2H1 Missense_Mutation p.M215I 0.26 tolerated(0.11) benign(0.129) TCGA-FD-A3B6-01 11 20089894 20089894 G A NAV2 Missense_Mutation p.D1701N 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-FD-A3B6-01 11 26587436 26587436 A T MUC15 Missense_Mutation p.F17L 0.08 deleterious_low_confidence(0) benign(0.005) TCGA-FD-A3B6-01 11 44097105 44097105 C G ACCS Silent p.L173L 0.13 TCGA-FD-A3B6-01 11 46783565 46783565 G A CKAP5 Silent p.F1402F 0.19 TCGA-FD-A3B6-01 11 47644272 47644272 C T MTCH2 Nonsense_Mutation p.W269* 0.15 TCGA-FD-A3B6-01 11 49974700 49974700 C G OR4C13 Missense_Mutation p.I242M 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.633) TCGA-FD-A3B6-01 11 55065629 55065629 G C TRIM51HP RNA 0.21 TCGA-FD-A3B6-01 11 61595905 61595905 G A FADS2 Missense_Mutation p.E15K 0.53 tolerated(0.79) benign(0.002) TCGA-FD-A3B6-01 11 63668461 63668461 G T MARK2 Nonsense_Mutation p.E341* 0.08 TCGA-FD-A3B6-01 11 67957497 67957497 C G SUV420H1 Missense_Mutation p.R16T 0.17 deleterious(0) possibly_damaging(0.834) TCGA-FD-A3B6-01 11 72418281 72418281 C T ARAP1 Silent p.G554G 0.37 TCGA-FD-A3B6-01 11 77775045 77775045 G A THRSP Missense_Mutation p.V40M 0.14 tolerated(0.13) benign(0.075) TCGA-FD-A3B6-01 11 82560964 82560964 G C PRCP Nonsense_Mutation p.S269* 0.08 TCGA-FD-A3B6-01 11 86133623 86133623 G A CCDC81 Missense_Mutation p.D609N 0.26 tolerated(0.28) benign(0.043) TCGA-FD-A3B6-01 11 9009806 9009806 C A NRIP3 Missense_Mutation p.R66S 0.22 deleterious(0) benign(0.298) TCGA-FD-A3B6-01 11 9009807 9009807 C A NRIP3 Missense_Mutation p.R66M 0.22 deleterious(0) possibly_damaging(0.847) TCGA-FD-A3B6-01 11 92616453 92616453 G A FAT3 Silent p.R4277R 0.23 TCGA-FD-A3B6-01 12 107372423 107372423 G C MTERFD3 Missense_Mutation p.P24A 0.11 tolerated(0.2) benign(0.022) TCGA-FD-A3B6-01 12 109702924 109702924 G C ACACB Missense_Mutation p.E2318Q 0.27 tolerated(0.18) benign(0.021) TCGA-FD-A3B6-01 12 120576588 120576588 C T GCN1L1 Missense_Mutation p.E2023K 0.30 benign(0.424) TCGA-FD-A3B6-01 12 123970241 123970241 C T RILPL1 Missense_Mutation p.E305K 0.12 deleterious(0) probably_damaging(0.937) TCGA-FD-A3B6-01 12 125834138 125834138 A G TMEM132B Missense_Mutation p.S65G 0.14 deleterious(0) probably_damaging(0.997) TCGA-FD-A3B6-01 12 133252767 133252767 C G POLE Missense_Mutation p.E311D 0.09 tolerated(0.12) possibly_damaging(0.78) TCGA-FD-A3B6-01 12 133433181 133433181 C G CHFR Missense_Mutation p.D380H 0.26 deleterious(0) probably_damaging(0.954) TCGA-FD-A3B6-01 12 22068679 22068679 C A ABCC9 Missense_Mutation p.A247S 0.55 tolerated(0.84) benign(0.038) TCGA-FD-A3B6-01 12 2676892 2676892 G C CACNA1C Missense_Mutation p.K609N 0.09 tolerated(0.32) benign(0.017) TCGA-FD-A3B6-01 12 32729320 32729320 C G FGD4 Missense_Mutation p.S10C 0.20 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-FD-A3B6-01 12 32861134 32861135 AG - DNM1L Frame_Shift_Del p.E116Kfs*6 0.33 TCGA-FD-A3B6-01 12 43750291 43750291 G A ADAMTS20 Missense_Mutation p.S1880L 0.33 deleterious(0.04) probably_damaging(0.923) TCGA-FD-A3B6-01 12 43822323 43822323 G A ADAMTS20 Silent p.S1222S 0.28 TCGA-FD-A3B6-01 12 4668234 4668234 A G RAD51AP1 3'UTR 0.57 TCGA-FD-A3B6-01 12 48482596 48482596 C T SENP1 Missense_Mutation p.R123Q 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A3B6-01 12 51319031 51319031 G A METTL7A Silent p.G70G 0.14 TCGA-FD-A3B6-01 12 51319142 51319142 G A METTL7A Silent p.L107L 0.20 TCGA-FD-A3B6-01 12 53579200 53579200 G A ZNF740 Silent p.R63R 0.30 TCGA-FD-A3B6-01 12 56482341 56482341 G T ERBB3 Missense_Mutation p.D297Y 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 12 56667506 56667506 C T CS Silent p.L365L 0.23 TCGA-FD-A3B6-01 12 6952355 6952355 C T GNB3 Missense_Mutation p.S74L 0.12 deleterious(0.01) possibly_damaging(0.769) TCGA-FD-A3B6-01 12 75875733 75875733 G C GLIPR1 Missense_Mutation p.E98D 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 12 78513485 78513485 C G NAV3 Missense_Mutation p.S1170C 0.15 deleterious(0) probably_damaging(0.987) TCGA-FD-A3B6-01 12 8078455 8078455 G C SLC2A3 Missense_Mutation p.I317M 0.09 deleterious(0) possibly_damaging(0.721) TCGA-FD-A3B6-01 12 81111188 81111188 C T MYF5 Nonsense_Mutation p.Q116* 0.20 TCGA-FD-A3B6-01 12 81503360 81503360 C T ACSS3 Silent p.N111N 0.10 TCGA-FD-A3B6-01 12 88584258 88584258 G A TMTC3 Missense_Mutation p.R522K 0.15 deleterious(0.04) benign(0.273) TCGA-FD-A3B6-01 13 21212522 21212522 G C IFT88 Missense_Mutation p.D489H 0.08 deleterious(0) probably_damaging(0.995) TCGA-FD-A3B6-01 13 32841395 32841395 G A FRY Missense_Mutation p.D2679N 0.16 tolerated(0.08) benign(0.013) TCGA-FD-A3B6-01 13 48660459 48660459 G A MED4 Nonsense_Mutation p.Q108* 0.15 TCGA-FD-A3B6-01 13 49027133 49027133 C T RB1 Missense_Mutation p.S567L 0.30 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 13 49027219 49027219 C G RB1 Missense_Mutation p.L596V 0.36 tolerated(0.14) benign(0.008) TCGA-FD-A3B6-01 13 53602986 53602986 C T OLFM4 Silent p.L5L 0.31 TCGA-FD-A3B6-01 13 77786175 77786175 G T MYCBP2 Missense_Mutation p.Q1022K 0.08 possibly_damaging(0.877) TCGA-FD-A3B6-01 14 20944780 20944780 G A PNP 3'UTR 0.12 TCGA-FD-A3B6-01 14 24801042 24801042 G T ADCY4 Silent p.L207L 0.12 TCGA-FD-A3B6-01 14 35873730 35873730 C T NFKBIA Missense_Mutation p.E41K 0.26 tolerated(0.07) benign(0.159) TCGA-FD-A3B6-01 14 52922155 52922155 G A TXNDC16 Missense_Mutation p.P577S 0.48 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A3B6-01 14 55618599 55618599 G C DLGAP5 Missense_Mutation p.L728V 0.48 tolerated(0.24) possibly_damaging(0.521) TCGA-FD-A3B6-01 14 59835468 59835468 G T DAAM1 Missense_Mutation p.G1043V 0.59 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 15 31233969 31233969 G A MTMR10 Missense_Mutation p.H680Y 0.42 tolerated(0.16) possibly_damaging(0.804) TCGA-FD-A3B6-01 15 42129134 42129134 C T JMJD7 Silent p.I286I 0.17 TCGA-FD-A3B6-01 15 43910137 43910137 C T STRC Missense_Mutation p.C161Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B6-01 15 48052505 48052505 A T SEMA6D Silent p.S38S 0.16 TCGA-FD-A3B6-01 15 68649637 68649637 C A ITGA11 Missense_Mutation p.V201F 0.20 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B6-01 15 75819584 75819584 C T PTPN9 Missense_Mutation p.E28K 0.08 tolerated(0.12) benign(0.116) TCGA-FD-A3B6-01 15 77472021 77472021 C T PEAK1 Missense_Mutation p.E750K 0.10 deleterious(0.03) benign(0.195) TCGA-FD-A3B6-01 15 83776476 83776476 C T TM6SF1 Missense_Mutation p.S15L 0.14 tolerated(0.41) benign(0.001) TCGA-FD-A3B6-01 15 86205636 86205636 C G AKAP13 Missense_Mutation p.S1588C 0.35 deleterious(0.01) benign(0.245) TCGA-FD-A3B6-01 16 21985248 21985248 C G UQCRC2 Missense_Mutation p.S333C 0.17 deleterious(0) probably_damaging(0.968) TCGA-FD-A3B6-01 16 27518439 27518439 C G GTF3C1 Missense_Mutation p.K427N 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B6-01 16 29816648 29816648 C A KIF22 3'UTR 0.13 TCGA-FD-A3B6-01 16 29816657 29816657 C T KIF22 3'UTR 0.11 TCGA-FD-A3B6-01 16 304468 304468 G C ITFG3 Missense_Mutation p.R19T 0.24 tolerated(0.28) benign(0.311) TCGA-FD-A3B6-01 16 304632 304632 G A ITFG3 Missense_Mutation p.D74N 0.15 deleterious(0.05) probably_damaging(0.928) TCGA-FD-A3B6-01 16 50709713 50709713 G C SNX20 Missense_Mutation p.R84G 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-FD-A3B6-01 16 53288443 53288443 C T CHD9 Nonsense_Mutation p.R1319* 0.14 TCGA-FD-A3B6-01 16 58552747 58552747 G C SETD6 Missense_Mutation p.W412C 0.23 tolerated(0.09) possibly_damaging(0.766) TCGA-FD-A3B6-01 16 67912685 67912685 C G EDC4 Silent p.L410L 0.13 TCGA-FD-A3B6-01 16 67912931 67912931 C A EDC4 Missense_Mutation p.F453L 0.19 deleterious(0.01) probably_damaging(0.917) TCGA-FD-A3B6-01 16 71004428 71004428 C T HYDIN Missense_Mutation p.E1872K 0.22 possibly_damaging(0.533) TCGA-FD-A3B6-01 16 89351727 89351727 G C ANKRD11 Nonsense_Mutation p.S408* 0.09 TCGA-FD-A3B6-01 16 9862756 9862756 G T GRIN2A Missense_Mutation p.F849L 0.25 tolerated(0.15) probably_damaging(0.998) TCGA-FD-A3B6-01 17 1386204 1386204 C T MYO1C Missense_Mutation p.R166H 0.27 tolerated(0.24) benign(0.011) TCGA-FD-A3B6-01 17 16040681 16040681 C T NCOR1 Missense_Mutation p.E485K 0.14 benign(0.06) TCGA-FD-A3B6-01 17 16040727 16040727 C G NCOR1 Splice_Site p.X470_splice 0.18 TCGA-FD-A3B6-01 17 16470799 16470799 G A ZNF287 Missense_Mutation p.H83Y 0.10 deleterious(0) benign(0.405) TCGA-FD-A3B6-01 17 27028139 27028139 C T SUPT6H Nonsense_Mutation p.Q1663* 0.09 TCGA-FD-A3B6-01 17 3831578 3831578 C G ATP2A3 Missense_Mutation p.W1008C 0.20 deleterious_low_confidence(0.04) benign(0.004) TCGA-FD-A3B6-01 17 40315336 40315336 C A KCNH4 Nonsense_Mutation p.E832* 0.18 TCGA-FD-A3B6-01 17 40315715 40315715 G A KCNH4 Missense_Mutation p.H796Y 0.25 tolerated(0.1) benign(0.178) TCGA-FD-A3B6-01 17 40323897 40323897 G A KCNH4 Silent p.V368V 0.08 TCGA-FD-A3B6-01 17 4060176 4060176 G A CYB5D2 Missense_Mutation p.D199N 0.22 deleterious(0.04) benign(0.081) TCGA-FD-A3B6-01 17 46247987 46247987 G A SKAP1 Silent p.G287G 0.04 TCGA-FD-A3B6-01 17 4873702 4873702 C G CAMTA2 Missense_Mutation p.E1003Q 0.12 tolerated(0.17) probably_damaging(0.995) TCGA-FD-A3B6-01 17 48753883 48753883 C G ABCC3 Missense_Mutation p.I1104M 0.18 deleterious(0) possibly_damaging(0.778) TCGA-FD-A3B6-01 17 5289433 5289433 C G NUP88 3'UTR 0.15 TCGA-FD-A3B6-01 17 56665024 56665024 C G TEX14 Missense_Mutation p.M908I 0.38 tolerated(0.8) benign(0) TCGA-FD-A3B6-01 17 57275120 57275120 G A CTD-2510F5.6 Silent p.V35V 0.14 TCGA-FD-A3B6-01 17 73974647 73974647 G A ACOX1 Silent p.I79I 0.16 TCGA-FD-A3B6-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.24 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 17 7643863 7643863 G A DNAH2 Missense_Mutation p.R501H 0.13 possibly_damaging(0.906) TCGA-FD-A3B6-01 17 76533459 76533459 C A DNAH17 Silent p.L927L 0.40 TCGA-FD-A3B6-01 17 7673955 7673955 C G DNAH2 Silent p.L1393L 0.14 TCGA-FD-A3B6-01 17 79911122 79911122 C T NOTUM Silent p.V402V 0.18 TCGA-FD-A3B6-01 17 9489122 9489122 G A WDR16 Missense_Mutation p.D35N 0.17 tolerated(0.05) benign(0.109) TCGA-FD-A3B6-01 18 43510647 43510647 A G EPG5 Missense_Mutation p.Y803H 0.44 deleterious(0) probably_damaging(0.986) TCGA-FD-A3B6-01 18 48241459 48241459 C T MAPK4 Missense_Mutation p.S186L 0.15 deleterious(0.01) benign(0.328) TCGA-FD-A3B6-01 18 61377511 61377511 C G SERPINB11 Missense_Mutation p.I28M 0.44 deleterious(0.02) probably_damaging(0.972) TCGA-FD-A3B6-01 18 64212042 64212042 C T CDH19 Missense_Mutation p.D292N 0.51 tolerated(0.44) benign(0.083) TCGA-FD-A3B6-01 18 64212043 64212043 C T CDH19 Missense_Mutation p.M291I 0.51 tolerated(0.23) benign(0.422) TCGA-FD-A3B6-01 18 71920849 71920849 C G CYB5A Missense_Mutation p.L125F 0.04 tolerated(0.62) benign(0.027) TCGA-FD-A3B6-01 18 905323 905323 G C ADCYAP1 5'UTR 0.23 TCGA-FD-A3B6-01 19 10158007 10158007 C T C3P1 RNA 0.13 TCGA-FD-A3B6-01 19 11959698 11959698 C T ZNF439 5'UTR 0.38 TCGA-FD-A3B6-01 19 12829859 12829859 G A TNPO2 Silent p.L103L 0.19 TCGA-FD-A3B6-01 19 14079426 14079426 C T RFX1 Silent p.T561T 0.25 TCGA-FD-A3B6-01 19 15794528 15794528 C G CYP4F12 Silent p.A291A 0.19 TCGA-FD-A3B6-01 19 18311177 18311177 C A RAB3A Missense_Mutation p.D103Y 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 19 21909652 21909652 C G ZNF100 Missense_Mutation p.E488Q 0.12 deleterious(0.02) possibly_damaging(0.674) TCGA-FD-A3B6-01 19 325674 325674 C T MIER2 Missense_Mutation p.D206N 0.18 tolerated(0.1) possibly_damaging(0.735) TCGA-FD-A3B6-01 19 34983976 34983976 G C WTIP Silent p.V268V 0.14 TCGA-FD-A3B6-01 19 37117266 37117266 C A ZNF382 Missense_Mutation p.P156H 0.10 tolerated(0.3) possibly_damaging(0.82) TCGA-FD-A3B6-01 19 38673330 38673330 G C SIPA1L3 Missense_Mutation p.K1460N 0.20 deleterious(0) probably_damaging(0.992) TCGA-FD-A3B6-01 19 43382064 43382064 C T PSG1 Splice_Site p.X144_splice 0.39 TCGA-FD-A3B6-01 19 43575870 43575870 A G PSG2 Silent p.L316L 0.13 TCGA-FD-A3B6-01 19 44050093 44050093 C T XRCC1 Missense_Mutation p.E500K 0.09 tolerated(0.48) benign(0.108) TCGA-FD-A3B6-01 19 44050097 44050097 C T XRCC1 Silent p.Q498Q 0.11 TCGA-FD-A3B6-01 19 44051059 44051059 C T XRCC1 Missense_Mutation p.E424K 0.18 tolerated(0.39) benign(0.423) TCGA-FD-A3B6-01 19 46393972 46393972 G A MYPOP Missense_Mutation p.P370L 0.21 tolerated_low_confidence(0.25) benign(0.011) TCGA-FD-A3B6-01 19 49674990 49674990 C G TRPM4 Missense_Mutation p.F338L 0.38 tolerated(0.5) benign(0.002) TCGA-FD-A3B6-01 19 51856530 51856530 G A ETFB Silent p.T168T 0.10 TCGA-FD-A3B6-01 19 51875508 51875508 C T NKG7 Missense_Mutation p.V71M 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-FD-A3B6-01 19 53854452 53854452 C G ZNF845 Nonsense_Mutation p.S175* 0.22 TCGA-FD-A3B6-01 19 5613501 5613501 G T SAFB2 Nonsense_Mutation p.S194* 0.21 TCGA-FD-A3B6-01 19 58101751 58101751 G A ZIK1 Missense_Mutation p.G191D 0.39 tolerated(0.17) benign(0.06) TCGA-FD-A3B6-01 19 7965381 7965381 C G LRRC8E Silent p.L658L 0.19 TCGA-FD-A3B6-01 19 9086461 9086461 G T MUC16 Nonsense_Mutation p.S1785* 0.21 TCGA-FD-A3B6-01 19 9088659 9088659 C T MUC16 Silent p.L1052L 0.22 TCGA-FD-A3B6-01 1 103483426 103483426 G A COL11A1 Missense_Mutation p.P455S 0.32 probably_damaging(1) TCGA-FD-A3B6-01 1 10459135 10459135 C T PGD 5'Flank 0.12 TCGA-FD-A3B6-01 1 108023313 108023313 G T NTNG1 Missense_Mutation p.A491S 0.12 tolerated(0.15) benign(0.044) TCGA-FD-A3B6-01 1 114640500 114640500 C G SYT6 Splice_Site p.X370_splice 0.17 TCGA-FD-A3B6-01 1 118496158 118496158 G A WDR3 Silent p.V754V 0.31 TCGA-FD-A3B6-01 1 118496687 118496687 G A WDR3 Missense_Mutation p.E776K 0.33 tolerated(0.09) possibly_damaging(0.521) TCGA-FD-A3B6-01 1 153604116 153604116 C G S100A1 Intron 0.18 TCGA-FD-A3B6-01 1 155291967 155291967 C T RUSC1 Nonsense_Mutation p.Q135* 0.13 TCGA-FD-A3B6-01 1 155791331 155791331 G A GON4L Silent p.I299I 0.16 TCGA-FD-A3B6-01 1 165737466 165737466 C G TMCO1 Missense_Mutation p.K88N 0.12 deleterious(0.03) possibly_damaging(0.908) TCGA-FD-A3B6-01 1 169551671 169551671 G A F5 Missense_Mutation p.S83L 0.32 tolerated(0.22) probably_damaging(0.999) TCGA-FD-A3B6-01 1 176564245 176564245 C T PAPPA2 Missense_Mutation p.T502I 0.09 deleterious(0) possibly_damaging(0.614) TCGA-FD-A3B6-01 1 181768011 181768011 G C CACNA1E 3'UTR 0.33 TCGA-FD-A3B6-01 1 193020927 193020927 C A UCHL5 Nonsense_Mutation p.E33* 0.20 TCGA-FD-A3B6-01 1 197297651 197297651 C T CRB1 Missense_Mutation p.S57L 0.16 tolerated(0.32) benign(0.005) TCGA-FD-A3B6-01 1 200377122 200377122 C T ZNF281 Missense_Mutation p.G571D 0.22 deleterious(0.01) probably_damaging(0.963) TCGA-FD-A3B6-01 1 203054922 203054922 C A MYOG Silent p.G56G 0.25 TCGA-FD-A3B6-01 1 203465269 203465269 C T OPTC Silent p.L46L 0.23 TCGA-FD-A3B6-01 1 204985457 204985457 G A NFASC Silent p.L1171L 0.26 TCGA-FD-A3B6-01 1 207087417 207087417 G A FAIM3 Silent p.L20L 0.18 TCGA-FD-A3B6-01 1 207640030 207640030 G T CR2 Missense_Mutation p.G73V 0.17 deleterious(0) probably_damaging(0.951) TCGA-FD-A3B6-01 1 2121153 2121153 A G C1orf86 Missense_Mutation p.W180R 0.22 deleterious(0) possibly_damaging(0.781) TCGA-FD-A3B6-01 1 220792050 220792050 C A MARK1 Missense_Mutation p.L288M 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 1 228522218 228522218 G A OBSCN Missense_Mutation p.D6311N 0.29 benign(0.004) TCGA-FD-A3B6-01 1 231076227 231076227 G A TTC13 Missense_Mutation p.R250W 0.17 deleterious(0.01) probably_damaging(0.969) TCGA-FD-A3B6-01 1 231386813 231386813 G T GNPAT Missense_Mutation p.G62V 0.09 tolerated(0.14) possibly_damaging(0.495) TCGA-FD-A3B6-01 1 233807173 233807173 C T KCNK1 Missense_Mutation p.S303L 0.31 deleterious(0) possibly_damaging(0.808) TCGA-FD-A3B6-01 1 243349256 243349256 G A CEP170 Missense_Mutation p.S464L 0.08 deleterious(0.01) probably_damaging(0.946) TCGA-FD-A3B6-01 1 245582962 245582962 G A KIF26B Missense_Mutation p.A361T 0.22 tolerated(0.36) unknown(0) TCGA-FD-A3B6-01 1 245865906 245865906 T C KIF26B Nonstop_Mutation p.*2109Qext*34 0.28 TCGA-FD-A3B6-01 1 248059565 248059565 T G OR2W3 Nonsense_Mutation p.L226* 0.25 TCGA-FD-A3B6-01 1 25551554 25551554 G A SYF2 Missense_Mutation p.H169Y 0.29 tolerated(0.27) benign(0.02) TCGA-FD-A3B6-01 1 27124128 27124128 G A PIGV Silent p.E425E 0.28 TCGA-FD-A3B6-01 1 35864515 35864515 C T ZMYM4 Missense_Mutation p.P1102S 0.15 tolerated(0.19) probably_damaging(0.931) TCGA-FD-A3B6-01 1 46746098 46746098 C T LRRC41 Missense_Mutation p.D631N 0.16 deleterious(0.01) possibly_damaging(0.728) TCGA-FD-A3B6-01 1 52251500 52251500 C G OSBPL9 Missense_Mutation p.S627C 0.16 deleterious(0) possibly_damaging(0.841) TCGA-FD-A3B6-01 1 52991393 52991393 G A ZCCHC11 Missense_Mutation p.S187F 0.17 deleterious_low_confidence(0.03) benign(0.361) TCGA-FD-A3B6-01 1 62993831 62993831 G A DOCK7 Silent p.L1278L 0.15 TCGA-FD-A3B6-01 1 78479241 78479241 C A DNAJB4 Missense_Mutation p.H240N 0.17 deleterious(0.02) probably_damaging(0.947) TCGA-FD-A3B6-01 1 79102774 79102774 C G IFI44L Missense_Mutation p.L312V 0.16 deleterious(0) probably_damaging(0.978) TCGA-FD-A3B6-01 1 89414843 89414843 C T CCBL2 Missense_Mutation p.E358K 0.19 tolerated(0.65) benign(0.008) TCGA-FD-A3B6-01 1 94933515 94933515 G C ABCD3 Missense_Mutation p.R96P 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B6-01 1 9662348 9662348 G C TMEM201 Intron 0.19 TCGA-FD-A3B6-01 20 17445975 17445975 G A PCSK2 Missense_Mutation p.G403S 0.31 tolerated(0.35) benign(0.006) TCGA-FD-A3B6-01 20 23476594 23476594 C T CST8 3'UTR 0.10 TCGA-FD-A3B6-01 20 23731323 23731323 C G CST1 Missense_Mutation p.D61H 0.34 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B6-01 20 40748574 40748574 C T PTPRT Splice_Site p.X962_splice 0.31 TCGA-FD-A3B6-01 20 43129871 43129871 C T SERINC3 Missense_Mutation p.D376N 0.14 tolerated(0.05) probably_damaging(0.936) TCGA-FD-A3B6-01 20 44477114 44477114 C G ACOT8 Missense_Mutation p.E155Q 0.13 tolerated(0.2) benign(0.082) TCGA-FD-A3B6-01 20 55948726 55948726 G C RAE1 Missense_Mutation p.D253H 0.28 deleterious(0) probably_damaging(0.958) TCGA-FD-A3B6-01 20 61511301 61511301 C G DIDO1 Missense_Mutation p.E2003Q 0.12 possibly_damaging(0.886) TCGA-FD-A3B6-01 21 10951282 10951282 G T TPTE Silent p.R144R 0.11 TCGA-FD-A3B6-01 21 34951767 34951767 C T DONSON Silent p.L484L 0.15 TCGA-FD-A3B6-01 21 43222983 43222983 C G PRDM15 Silent p.A1310A 0.13 TCGA-FD-A3B6-01 21 43504216 43504216 C T UMODL1 Silent p.F114F 0.26 TCGA-FD-A3B6-01 21 44427655 44427655 G C PKNOX1 Missense_Mutation p.D36H 0.15 deleterious(0.04) possibly_damaging(0.511) TCGA-FD-A3B6-01 22 18844825 18844825 G A BCRP7 Intron 0.11 TCGA-FD-A3B6-01 22 21363584 21363584 G A AC002472.1 5'Flank 0.23 TCGA-FD-A3B6-01 22 22749733 22749733 C G IGLV7-43 Missense_Mutation p.S86C 0.22 deleterious(0) probably_damaging(0.993) TCGA-FD-A3B6-01 22 22890562 22890562 G A PRAME Missense_Mutation p.P486L 0.20 tolerated(0.29) benign(0.066) TCGA-FD-A3B6-01 22 40139982 40139982 G C ENTHD1 Missense_Mutation p.S509C 0.18 deleterious(0.01) possibly_damaging(0.847) TCGA-FD-A3B6-01 22 40140187 40140187 G A ENTHD1 Silent p.L441L 0.23 TCGA-FD-A3B6-01 22 40140202 40140202 G C ENTHD1 Missense_Mutation p.L436V 0.19 tolerated(0.93) benign(0.01) TCGA-FD-A3B6-01 22 47073091 47073091 C T GRAMD4 Silent p.T560T 0.16 TCGA-FD-A3B6-01 22 50684743 50684743 G C HDAC10 Missense_Mutation p.S545C 0.11 tolerated(0.07) benign(0.007) TCGA-FD-A3B6-01 2 10952816 10952816 G A PDIA6 Missense_Mutation p.L3F 0.25 tolerated(0.31) benign(0.001) TCGA-FD-A3B6-01 2 112838657 112838657 C T TMEM87B Missense_Mutation p.H206Y 0.41 tolerated(0.51) benign(0.02) TCGA-FD-A3B6-01 2 112838676 112838676 C G TMEM87B Nonsense_Mutation p.S212* 0.42 TCGA-FD-A3B6-01 2 112839041 112839041 G C TMEM87B Missense_Mutation p.E262Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B6-01 2 120231035 120231035 C G SCTR Missense_Mutation p.E133D 0.29 tolerated(0.45) benign(0.061) TCGA-FD-A3B6-01 2 130911366 130911366 G C SMPD4 Missense_Mutation p.A640G 0.59 tolerated(1) benign(0) TCGA-FD-A3B6-01 2 136566130 136566130 C T LCT Missense_Mutation p.E1263K 0.51 deleterious(0.03) probably_damaging(0.911) TCGA-FD-A3B6-01 2 159481626 159481626 C T PKP4 Silent p.A280A 0.17 TCGA-FD-A3B6-01 2 168114810 168114810 G C XIRP2 3'UTR 0.10 TCGA-FD-A3B6-01 2 177034235 177034235 C A HOXD3 Silent p.P131P 0.13 TCGA-FD-A3B6-01 2 178936390 178936390 C G PDE11A Missense_Mutation p.D259H 0.28 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B6-01 2 179587610 179587610 G A TTN Missense_Mutation p.S7339L 0.19 TCGA-FD-A3B6-01 2 179605206 179605206 G C TTN Missense_Mutation p.L4252V 0.16 TCGA-FD-A3B6-01 2 211421401 211421401 C T CPS1 Intron 0.43 TCGA-FD-A3B6-01 2 215609878 215609878 G C BARD1 Missense_Mutation p.H606D 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 2 218683208 218683208 G C TNS1 Missense_Mutation p.Q1179E 0.12 tolerated(0.33) benign(0.146) TCGA-FD-A3B6-01 2 26706500 26706500 C T OTOF Missense_Mutation p.E408K 0.24 tolerated(0.58) benign(0.16) TCGA-FD-A3B6-01 2 36982074 36982074 G C VIT Missense_Mutation p.D96H 0.46 deleterious(0.03) benign(0.078) TCGA-FD-A3B6-01 2 47389450 47389450 C G CALM2 Missense_Mutation p.R87T 0.12 deleterious_low_confidence(0.04) benign(0.048) TCGA-FD-A3B6-01 2 75720637 75720637 C G EVA1A Missense_Mutation p.D62H 0.15 tolerated(0.12) probably_damaging(0.991) TCGA-FD-A3B6-01 2 97531659 97531659 C A SEMA4C Missense_Mutation p.W89L 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A3B6-01 3 10094121 10094121 C G FANCD2 Silent p.L532L 0.10 TCGA-FD-A3B6-01 3 105377939 105377939 C G CBLB Missense_Mutation p.E942Q 0.09 tolerated_low_confidence(0.7) probably_damaging(0.924) TCGA-FD-A3B6-01 3 119222468 119222468 G A TIMMDC1 Splice_Site p.X150_splice 0.40 TCGA-FD-A3B6-01 3 122437553 122437553 C T PARP14 Nonsense_Mutation p.R1519* 0.15 TCGA-FD-A3B6-01 3 137893688 137893688 C A DBR1 5'UTR 0.21 TCGA-FD-A3B6-01 3 138341033 138341033 G C FAIM Missense_Mutation p.E73Q 0.06 deleterious(0.01) benign(0.308) TCGA-FD-A3B6-01 3 141326559 141326559 T A RASA2 Missense_Mutation p.L658H 0.14 deleterious(0.01) probably_damaging(0.923) TCGA-FD-A3B6-01 3 167183420 167183420 G C SERPINI2 Missense_Mutation p.L174V 0.28 tolerated(0.21) probably_damaging(0.974) TCGA-FD-A3B6-01 3 169572606 169572606 G T LRRC31 Nonsense_Mutation p.S329* 0.20 TCGA-FD-A3B6-01 3 178936091 178936091 G C PIK3CA Missense_Mutation p.E545Q 0.21 tolerated(0.06) possibly_damaging(0.796) TCGA-FD-A3B6-01 3 184298213 184298213 C T EPHB3 Silent p.V732V 0.12 TCGA-FD-A3B6-01 3 186504574 186504574 G A EIF4A2 Intron 0.26 TCGA-FD-A3B6-01 3 19190172 19190172 G A KCNH8 5'UTR 0.11 TCGA-FD-A3B6-01 3 25775404 25775404 C T NGLY1 Missense_Mutation p.E407K 0.09 deleterious(0) probably_damaging(0.992) TCGA-FD-A3B6-01 3 37056000 37056000 C G MLH1 Nonsense_Mutation p.S252* 0.08 TCGA-FD-A3B6-01 3 43640099 43640099 C G ANO10 Missense_Mutation p.E133Q 0.06 deleterious(0.01) benign(0.403) TCGA-FD-A3B6-01 3 49055271 49055271 C T DALRD3 Missense_Mutation p.D165N 0.19 tolerated(0.11) benign(0.348) TCGA-FD-A3B6-01 3 50231304 50231304 C T GNAT1 Missense_Mutation p.L190F 0.28 deleterious(0.02) probably_damaging(1) TCGA-FD-A3B6-01 3 52233298 52233298 T G ALAS1 Missense_Mutation p.V14G 0.17 tolerated(0.08) probably_damaging(0.988) TCGA-FD-A3B6-01 3 64617494 64617494 T C ADAMTS9 Silent p.T761T 0.17 TCGA-FD-A3B6-01 3 8667307 8667307 G T SSUH2 Missense_Mutation p.S265Y 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-FD-A3B6-01 3 9956161 9956161 C G IL17RE Intron 0.16 TCGA-FD-A3B6-01 4 113508784 113508784 C G C4orf21 Missense_Mutation p.Q1143H 0.22 deleterious(0) probably_damaging(0.911) TCGA-FD-A3B6-01 4 114275328 114275328 G T ANK2 Nonsense_Mutation p.E1852* 0.26 TCGA-FD-A3B6-01 4 114275400 114275400 G A ANK2 Missense_Mutation p.E1876K 0.24 possibly_damaging(0.69) TCGA-FD-A3B6-01 4 122735121 122735121 G A EXOSC9 Missense_Mutation p.E359K 0.26 tolerated_low_confidence(0.2) benign(0.392) TCGA-FD-A3B6-01 4 122766713 122766713 G A BBS7 Silent p.A392A 0.20 TCGA-FD-A3B6-01 4 146653608 146653608 C T C4orf51 Missense_Mutation p.H169Y 0.19 deleterious(0.04) benign(0.033) TCGA-FD-A3B6-01 4 151124998 151124998 C G DCLK2 Missense_Mutation p.S355C 0.13 deleterious(0.01) possibly_damaging(0.879) TCGA-FD-A3B6-01 4 153893636 153893636 G A FHDC1 Silent p.L442L 0.19 TCGA-FD-A3B6-01 4 156638380 156638380 C T GUCY1A3 Nonsense_Mutation p.Q548* 0.21 TCGA-FD-A3B6-01 4 15704735 15704735 G A BST1 5'UTR 0.21 TCGA-FD-A3B6-01 4 89660243 89660243 G A FAM13A Silent p.L834L 0.28 TCGA-FD-A3B6-01 5 112915339 112915339 A G YTHDC2 Missense_Mutation p.N1101D 0.29 tolerated(0.5) benign(0.001) TCGA-FD-A3B6-01 5 138700267 138700267 A T PAIP2 Missense_Mutation p.L51F 0.14 deleterious(0) probably_damaging(0.931) TCGA-FD-A3B6-01 5 140222772 140222772 C T PCDHA8 Silent p.F622F 0.30 TCGA-FD-A3B6-01 5 140249748 140249748 T - PCDHA11 Frame_Shift_Del p.L354Cfs*17 0.34 TCGA-FD-A3B6-01 5 140603436 140603436 A G PCDHB14 Missense_Mutation p.E120G 0.23 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-FD-A3B6-01 5 14387596 14387596 G C TRIO Missense_Mutation p.C1207S 0.21 probably_damaging(0.994) TCGA-FD-A3B6-01 5 145719138 145719138 G C POU4F3 Missense_Mutation p.D50H 0.37 deleterious(0) probably_damaging(0.94) TCGA-FD-A3B6-01 5 154395261 154395261 G A KIF4B Silent p.K614K 0.35 TCGA-FD-A3B6-01 5 156679642 156679642 C T ITK Missense_Mutation p.S606F 0.35 tolerated(0.72) benign(0.004) TCGA-FD-A3B6-01 5 453801 453801 T A EXOC3 Silent p.L227L 0.18 TCGA-FD-A3B6-01 5 52377489 52377489 C T ITGA2 Missense_Mutation p.S1036F 0.23 tolerated(0.38) possibly_damaging(0.712) TCGA-FD-A3B6-01 5 71490041 71490041 G A MAP1B Missense_Mutation p.G287R 0.14 unknown(0) TCGA-FD-A3B6-01 5 7773096 7773096 C T ADCY2 Missense_Mutation p.R756W 0.17 deleterious(0.02) possibly_damaging(0.449) TCGA-FD-A3B6-01 5 79854455 79854455 C A ANKRD34B Missense_Mutation p.D462Y 0.16 deleterious(0) probably_damaging(0.969) TCGA-FD-A3B6-01 5 9197325 9197325 C T SEMA5A Silent p.S341S 0.20 TCGA-FD-A3B6-01 6 10404842 10404842 G A TFAP2A Silent p.L221L 0.33 TCGA-FD-A3B6-01 6 106975304 106975304 G C AIM1 Missense_Mutation p.D1105H 0.17 tolerated(0.13) possibly_damaging(0.54) TCGA-FD-A3B6-01 6 129573422 129573422 G A LAMA2 Missense_Mutation p.G693E 0.09 tolerated(0.35) benign(0.044) TCGA-FD-A3B6-01 6 131190961 131190961 C T EPB41L2 Silent p.P783P 0.17 TCGA-FD-A3B6-01 6 132860331 132860331 T A TAAR9 Nonsense_Mutation p.Y301* 0.24 TCGA-FD-A3B6-01 6 146256489 146256489 C G SHPRH Missense_Mutation p.K886N 0.21 tolerated(0.13) benign(0.027) TCGA-FD-A3B6-01 6 154521101 154521101 G T IPCEF1 Missense_Mutation p.T204K 0.08 tolerated(0.14) possibly_damaging(0.462) TCGA-FD-A3B6-01 6 159653694 159653694 C G FNDC1 Nonsense_Mutation p.S717* 0.26 TCGA-FD-A3B6-01 6 31777967 31777967 C T HSPA1L Missense_Mutation p.D595N 0.25 deleterious_low_confidence(0.02) benign(0.237) TCGA-FD-A3B6-01 6 32159216 32159216 T C GPSM3 Missense_Mutation p.E137G 0.37 deleterious(0.03) probably_damaging(0.982) TCGA-FD-A3B6-01 6 56006588 56006588 C G COL21A1 Missense_Mutation p.D513H 0.23 tolerated(0.31) possibly_damaging(0.56) TCGA-FD-A3B6-01 6 87971379 87971379 A G ZNF292 Missense_Mutation p.T2678A 0.25 tolerated(0.56) benign(0.023) TCGA-FD-A3B6-01 7 100806828 100806828 C T VGF Missense_Mutation p.E433K 0.47 tolerated_low_confidence(0.21) unknown(0) TCGA-FD-A3B6-01 7 121650934 121650934 G A PTPRZ1 Missense_Mutation p.E612K 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.562) TCGA-FD-A3B6-01 7 131866328 131866328 C T PLXNA4 Missense_Mutation p.A1102T 0.35 tolerated(0.71) benign(0.007) TCGA-FD-A3B6-01 7 137150661 137150661 C T DGKI Missense_Mutation p.A877T 0.13 tolerated(0.33) benign(0.036) TCGA-FD-A3B6-01 7 14724975 14724975 C T DGKB Missense_Mutation p.D242N 0.21 tolerated(0.08) benign(0.188) TCGA-FD-A3B6-01 7 149128965 149128966 GC - ZNF777 Frame_Shift_Del p.T801Gfs*70 0.13 TCGA-FD-A3B6-01 7 21723453 21723453 G T DNAH11 Nonsense_Mutation p.E1845* 0.15 TCGA-FD-A3B6-01 7 23802426 23802426 G A STK31 Missense_Mutation p.G434R 0.34 tolerated(0.11) benign(0.015) TCGA-FD-A3B6-01 7 31132288 31132288 G T ADCYAP1R1 Missense_Mutation p.V329F 0.17 tolerated(0.1) benign(0.023) TCGA-FD-A3B6-01 7 44734097 44734097 C T OGDH Silent p.I530I 0.29 TCGA-FD-A3B6-01 7 48004979 48004979 G A HUS1 Nonsense_Mutation p.Q273* 0.21 TCGA-FD-A3B6-01 7 56126340 56126340 C G CCT6A Missense_Mutation p.L305V 0.24 deleterious(0.02) possibly_damaging(0.824) TCGA-FD-A3B6-01 7 6730643 6730643 G A ZNF12 Missense_Mutation p.R644W 0.33 deleterious(0) probably_damaging(0.997) TCGA-FD-A3B6-01 7 6730858 6730858 G A ZNF12 Missense_Mutation p.S572L 0.20 deleterious(0) benign(0.174) TCGA-FD-A3B6-01 7 6730881 6730881 G C ZNF12 Silent p.L564L 0.22 TCGA-FD-A3B6-01 7 70255891 70255891 G A AUTS2 Missense_Mutation p.R1230H 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-FD-A3B6-01 7 73245436 73245436 G A CLDN4 5'UTR 0.10 TCGA-FD-A3B6-01 7 87020948 87020948 C T CROT Missense_Mutation p.H477Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B6-01 7 87529553 87529553 A G DBF4 Missense_Mutation p.Y233C 0.10 deleterious(0) probably_damaging(0.984) TCGA-FD-A3B6-01 7 91503486 91503486 G C MTERF Missense_Mutation p.L208V 0.13 tolerated(0.68) benign(0.012) TCGA-FD-A3B6-01 7 94053674 94053674 G A COL1A2 Silent p.Q864Q 0.11 TCGA-FD-A3B6-01 7 98449087 98449087 G C TMEM130 Missense_Mutation p.I321M 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-FD-A3B6-01 7 99123756 99123756 C T ZKSCAN5 Missense_Mutation p.R365W 0.13 tolerated(0.17) probably_damaging(0.992) TCGA-FD-A3B6-01 8 125987911 125987911 C T ZNF572 Missense_Mutation p.S10L 0.13 tolerated(0.09) benign(0.116) TCGA-FD-A3B6-01 8 125988884 125988884 C T ZNF572 Missense_Mutation p.S125L 0.10 tolerated(0.33) benign(0.002) TCGA-FD-A3B6-01 8 125989705 125989705 C G ZNF572 Missense_Mutation p.L399V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A3B6-01 8 132991207 132991207 G T EFR3A Missense_Mutation p.L480F 0.10 tolerated(0.09) benign(0.132) TCGA-FD-A3B6-01 8 144991923 144991923 G T PLEC Silent p.L4159L 0.19 TCGA-FD-A3B6-01 8 145736008 145736008 G T MFSD3 Silent p.V286V 0.16 TCGA-FD-A3B6-01 8 41554068 41554068 A T ANK1 Missense_Mutation p.S966T 0.33 deleterious(0) possibly_damaging(0.799) TCGA-FD-A3B6-01 8 48309024 48309024 C T SPIDR Missense_Mutation p.P205L 0.13 tolerated(0.09) benign(0.154) TCGA-FD-A3B6-01 8 71520314 71520314 C G TRAM1 Missense_Mutation p.E41Q 0.08 tolerated(0.5) benign(0.082) TCGA-FD-A3B6-01 9 104153059 104153059 G C MRPL50 Missense_Mutation p.R56G 0.26 deleterious(0.01) benign(0.06) TCGA-FD-A3B6-01 9 1057268 1057268 C T DMRT2 Nonsense_Mutation p.Q561* 0.14 TCGA-FD-A3B6-01 9 107360932 107360932 T C OR13C5 Missense_Mutation p.I255V 0.37 tolerated(0.11) probably_damaging(0.994) TCGA-FD-A3B6-01 9 21216778 21216778 G C IFNA16 Missense_Mutation p.S176C 0.38 deleterious(0.01) benign(0.426) TCGA-FD-A3B6-01 9 27950351 27950351 G A LINGO2 Silent p.L107L 0.40 TCGA-FD-A3B6-01 9 32632499 32632499 G A TAF1L Missense_Mutation p.R1027C 0.13 deleterious(0) probably_damaging(0.953) TCGA-FD-A3B6-01 9 3898796 3898796 C G GLIS3 Missense_Mutation p.D675H 0.33 deleterious(0) probably_damaging(0.913) TCGA-FD-A3B6-01 9 5746003 5746003 G A KIAA1432 Missense_Mutation p.D390N 0.15 tolerated(0.27) benign(0.001) TCGA-FD-A3B6-01 9 77376712 77376712 G C TRPM6 Missense_Mutation p.S1562C 0.28 deleterious_low_confidence(0.05) benign(0.011) TCGA-FD-A3B6-01 9 79898509 79898509 C T VPS13A Silent p.N1094N 0.38 TCGA-FD-A3B6-01 9 84230956 84230956 G C TLE1 Missense_Mutation p.P287A 0.15 deleterious(0.05) possibly_damaging(0.613) TCGA-FD-A3B6-01 X 140984612 140984612 C G MAGEC3 Intron 0.40 TCGA-FD-A3B6-01 X 153131202 153131202 G A L1CAM Missense_Mutation p.P835L 0.28 tolerated(0.27) benign(0.109) TCGA-FD-A3B6-01 X 153631496 153631496 G A DNASE1L1 Silent p.C187C 0.05 TCGA-FD-A3B6-01 X 224039 224039 C A GTPBP6 Missense_Mutation p.G243V 0.19 deleterious(0) probably_damaging(0.984) TCGA-FD-A3B6-01 X 38019289 38019289 G A SRPX Silent p.G312G 0.36 TCGA-FD-A3B6-01 X 53438989 53438989 C T SMC1A Missense_Mutation p.E357K 0.33 tolerated(0.1) possibly_damaging(0.793) TCGA-FD-A3B6-01 X 55514287 55514287 C G USP51 Silent p.L362L 0.39 TCGA-FD-A3B6-01 X 71840611 71840611 A C PHKA1 Missense_Mutation p.S701A 0.10 tolerated(0.14) benign(0.004) TCGA-FD-A3B7-01 11 19258890 19258890 A C E2F8 Missense_Mutation p.I141S 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3B7-01 11 55890296 55890296 G C OR8H3 Missense_Mutation p.V150L 0.16 tolerated(0.4) benign(0.009) TCGA-FD-A3B7-01 11 70333340 70333340 C T SHANK2 Missense_Mutation p.E1021K 0.06 deleterious(0) benign(0.027) TCGA-FD-A3B7-01 12 124416242 124416242 G A DNAH10 Missense_Mutation p.E4208K 0.17 benign(0.009) TCGA-FD-A3B7-01 12 176584 176584 T C IQSEC3 Missense_Mutation p.V179A 0.06 tolerated(0.06) possibly_damaging(0.798) TCGA-FD-A3B7-01 12 248024 248024 G A IQSEC3 Missense_Mutation p.V499I 0.08 tolerated(0.1) probably_damaging(0.914) TCGA-FD-A3B7-01 12 57009072 57009072 G C BAZ2A Silent p.T154T 0.26 TCGA-FD-A3B7-01 12 99020057 99020057 T A IKBIP Missense_Mutation p.Y262F 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-FD-A3B7-01 13 49039215 49039215 A T RB1 Nonsense_Mutation p.K765* 0.29 TCGA-FD-A3B7-01 13 52605023 52605023 G C UTP14C Missense_Mutation p.E695Q 0.05 deleterious(0) probably_damaging(0.991) TCGA-FD-A3B7-01 14 22180998 22180998 C G TRAV2 Missense_Mutation p.F90L 0.04 tolerated(0.15) probably_damaging(0.953) TCGA-FD-A3B7-01 14 22337022 22337022 T C TRAV13-1 5'UTR 0.15 TCGA-FD-A3B7-01 14 47342656 47342656 T G MDGA2 Missense_Mutation p.H911P 0.12 deleterious(0) possibly_damaging(0.877) TCGA-FD-A3B7-01 15 40627566 40627566 G A C15orf52 Silent p.H466H 0.21 TCGA-FD-A3B7-01 15 49423006 49423006 G A COPS2 Nonsense_Mutation p.Q326* 0.17 TCGA-FD-A3B7-01 15 51675642 51675642 G T GLDN Missense_Mutation p.G142V 0.11 deleterious(0) probably_damaging(0.973) TCGA-FD-A3B7-01 15 73616166 73616166 C A HCN4 Silent p.A756A 0.14 TCGA-FD-A3B7-01 16 14312706 14312706 C G MKL2 Missense_Mutation p.Q182E 0.11 tolerated(1) benign(0.06) TCGA-FD-A3B7-01 16 27268804 27268804 C T NSMCE1 Missense_Mutation p.E30K 0.31 tolerated(0.16) probably_damaging(0.996) TCGA-FD-A3B7-01 17 20805781 20805781 G T RP11-344E13.3 RNA 0.12 TCGA-FD-A3B7-01 17 33521026 33521026 G A SLC35G3 Nonsense_Mutation p.R101* 0.23 TCGA-FD-A3B7-01 17 34942489 34942489 C G GGNBP2 Missense_Mutation p.S501C 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.54) TCGA-FD-A3B7-01 17 42882050 42882050 T G GJC1 Missense_Mutation p.N379T 0.06 tolerated(0.5) benign(0.133) TCGA-FD-A3B7-01 17 4905382 4905382 G - KIF1C Frame_Shift_Del p.S131Mfs*14 0.18 TCGA-FD-A3B7-01 17 52981124 52981124 C A TOM1L1 Silent p.I38I 0.07 TCGA-FD-A3B7-01 17 58952079 58952079 C T BCAS3 Missense_Mutation p.T214M 0.09 tolerated(0.05) benign(0.003) TCGA-FD-A3B7-01 17 65040766 65040766 C T CACNG1 5'UTR 0.13 TCGA-FD-A3B7-01 17 65871019 65871019 A G BPTF Missense_Mutation p.T583A 0.11 benign(0.009) TCGA-FD-A3B7-01 17 7077348 7077348 C T ASGR1 Nonsense_Mutation p.W211* 0.14 TCGA-FD-A3B7-01 17 72527608 72527608 G T CD300LB 5'Flank 0.05 TCGA-FD-A3B7-01 17 72954437 72954437 G A HID1 Silent p.A459A 0.31 TCGA-FD-A3B7-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A3B7-01 17 80017935 80017935 G T DUS1L Missense_Mutation p.R353S 0.16 tolerated(0.48) benign(0.002) TCGA-FD-A3B7-01 17 8012598 8012598 A C ALOXE3 Missense_Mutation p.Y618D 0.06 deleterious(0) possibly_damaging(0.835) TCGA-FD-A3B7-01 18 48575203 48575203 T A SMAD4 Missense_Mutation p.Y133N 0.26 deleterious(0) probably_damaging(1) TCGA-FD-A3B7-01 19 47884572 47884572 G A DHX34 Missense_Mutation p.G1097R 0.20 tolerated(0.16) benign(0.002) TCGA-FD-A3B7-01 19 55690386 55690386 C A SYT5 Silent p.P8P 0.26 TCGA-FD-A3B7-01 19 56370501 56370501 T C NLRP4 Missense_Mutation p.I581T 0.11 tolerated(0.63) benign(0) TCGA-FD-A3B7-01 19 8999557 8999557 T G MUC16 Missense_Mutation p.K13540Q 0.12 probably_damaging(0.995) TCGA-FD-A3B7-01 1 110257779 110257779 G C GSTM5 Missense_Mutation p.D162H 0.06 deleterious(0) probably_damaging(0.997) TCGA-FD-A3B7-01 1 115828746 115828746 C T NGF Missense_Mutation p.R224Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B7-01 1 145473839 145473839 C T ANKRD34A Missense_Mutation p.P171S 0.25 tolerated(0.18) benign(0.042) TCGA-FD-A3B7-01 1 151271497 151271497 A C PI4KB Missense_Mutation p.L613R 0.29 deleterious(0) probably_damaging(0.979) TCGA-FD-A3B7-01 1 154988705 154988705 G T ZBTB7B Missense_Mutation p.K422N 0.38 deleterious(0) probably_damaging(0.985) TCGA-FD-A3B7-01 1 158639226 158639226 T A SPTA1 Missense_Mutation p.K602I 0.33 tolerated(0.35) probably_damaging(0.998) TCGA-FD-A3B7-01 1 16260826 16260826 G C SPEN Silent p.V2697V 0.09 TCGA-FD-A3B7-01 1 173916585 173916585 T A RC3H1 Nonsense_Mutation p.K887* 0.10 TCGA-FD-A3B7-01 1 179335702 179335702 A G AXDND1 Missense_Mutation p.K20E 0.15 deleterious(0.03) possibly_damaging(0.636) TCGA-FD-A3B7-01 1 207758216 207758216 G A CR1 Missense_Mutation p.R1842H 0.09 tolerated(0.2) possibly_damaging(0.814) TCGA-FD-A3B7-01 1 248525736 248525736 G T OR2T4 Missense_Mutation p.G285V 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A3B7-01 1 9211792 9211792 C T MIR34A RNA 0.15 TCGA-FD-A3B7-01 20 47896941 47896941 G A ZNFX1 5'Flank 0.33 TCGA-FD-A3B7-01 20 55100852 55100852 C T FAM209A Intron 0.08 TCGA-FD-A3B7-01 21 30316094 30316094 T C LTN1 Missense_Mutation p.K1418R 0.14 tolerated(0.13) benign(0.029) TCGA-FD-A3B7-01 21 37781087 37781087 A C CHAF1B Silent p.V262V 0.09 TCGA-FD-A3B7-01 21 47588241 47588241 C T SPATC1L Silent p.R175R 0.09 TCGA-FD-A3B7-01 22 26743810 26743810 G A SEZ6L Missense_Mutation p.V780M 0.35 deleterious(0.03) probably_damaging(1) TCGA-FD-A3B7-01 22 50688081 50688081 G C HDAC10 Silent p.L182L 0.07 TCGA-FD-A3B7-01 2 103148843 103148843 G A SLC9A4 Missense_Mutation p.R698Q 0.14 tolerated(0.35) benign(0.003) TCGA-FD-A3B7-01 2 219892615 219892615 G A CCDC108 Silent p.V656V 0.20 TCGA-FD-A3B7-01 2 27444089 27444089 T G CAD Missense_Mutation p.F76V 0.15 deleterious(0.03) possibly_damaging(0.828) TCGA-FD-A3B7-01 2 42720041 42720041 C A KCNG3 Missense_Mutation p.A201S 0.29 tolerated(0.34) benign(0.016) TCGA-FD-A3B7-01 2 71190385 71190385 G A ATP6V1B1 Missense_Mutation p.V335M 0.07 deleterious(0.03) probably_damaging(0.978) TCGA-FD-A3B7-01 2 79349974 79349974 G A REG1A Missense_Mutation p.R110H 0.09 tolerated(0.17) benign(0.038) TCGA-FD-A3B7-01 2 95519013 95519013 A G ANKRD20A8P RNA 0.16 TCGA-FD-A3B7-01 3 169502469 169502469 A T MYNN Nonsense_Mutation p.K515* 0.12 TCGA-FD-A3B7-01 3 178919316 178919316 G C PIK3CA Silent p.L267L 0.09 TCGA-FD-A3B7-01 3 42777325 42777325 C T CCDC13 Silent p.L415L 0.17 TCGA-FD-A3B7-01 4 90034354 90034354 G C TIGD2 Missense_Mutation p.E77Q 0.14 tolerated(0.23) probably_damaging(0.987) TCGA-FD-A3B7-01 5 13753654 13753654 A C DNAH5 Missense_Mutation p.D3520E 0.08 possibly_damaging(0.739) TCGA-FD-A3B7-01 5 148753933 148753933 C G IL17B Nonstop_Mutation p.*181Sext*25 0.06 TCGA-FD-A3B7-01 5 148904715 148904715 C T CSNK1A1 Missense_Mutation p.D84N 0.24 deleterious_low_confidence(0.04) benign(0.012) TCGA-FD-A3B7-01 5 24492938 24492938 G C CDH10 Missense_Mutation p.Q538E 0.04 deleterious(0.03) possibly_damaging(0.579) TCGA-FD-A3B7-01 5 31323023 31323023 G C CDH6 Missense_Mutation p.D661H 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B7-01 5 92923892 92923892 A G NR2F1 Missense_Mutation p.I245V 0.18 tolerated(1) benign(0.009) TCGA-FD-A3B7-01 6 26107884 26107884 A G HIST1H1T Silent p.T146T 0.10 TCGA-FD-A3B7-01 6 2896393 2896393 T C SERPINB9 Missense_Mutation p.H67R 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-FD-A3B7-01 6 33371659 33371659 A G KIFC1 Missense_Mutation p.Q170R 0.06 tolerated(0.13) probably_damaging(0.917) TCGA-FD-A3B7-01 6 36652009 36652010 - G CDKN1A Frame_Shift_Ins p.A45Gfs*3 0.17 TCGA-FD-A3B7-01 7 43532701 43532701 T C HECW1 Missense_Mutation p.V1120A 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-FD-A3B7-01 8 38373959 38373959 C T C8orf86 Silent p.V129V 0.24 TCGA-FD-A3B7-01 8 38374031 38374031 C G C8orf86 Splice_Site p.X106_splice 0.12 TCGA-FD-A3B7-01 8 53573712 53573712 G A RB1CC1 Silent p.Y496Y 0.19 TCGA-FD-A3B7-01 9 107331818 107331818 G T OR13C8 Missense_Mutation p.V124L 0.20 tolerated(0.08) benign(0.006) TCGA-FD-A3B7-01 9 35906559 35906559 A C HRCT1 Missense_Mutation p.H92P 0.37 tolerated_low_confidence(0.3) unknown(0) TCGA-FD-A3B7-01 9 6251156 6251156 A T IL33 Missense_Mutation p.R78S 0.26 tolerated(0.13) benign(0.006) TCGA-FD-A3B7-01 9 74319732 74319732 A C TMEM2 Intron 0.11 TCGA-FD-A3B7-01 9 78772065 78772065 G A PCSK5 Missense_Mutation p.D473N 0.10 tolerated(0.09) benign(0.076) TCGA-FD-A3B7-01 X 100871491 100871491 C A ARMCX6 Missense_Mutation p.E40D 0.07 tolerated(0.14) probably_damaging(0.991) TCGA-FD-A3B7-01 X 89177721 89177721 G A TGIF2LX Missense_Mutation p.D213N 0.14 deleterious(0) probably_damaging(0.978) TCGA-FD-A3B8-01 10 24762442 24762442 G A KIAA1217 Missense_Mutation p.D378N 0.04 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A3B8-01 11 111558730 111558730 C G SIK2 Missense_Mutation p.L108V 0.05 deleterious(0) probably_damaging(0.999) TCGA-FD-A3B8-01 11 82877510 82877510 C G PCF11 Missense_Mutation p.S524C 0.04 tolerated(0.13) possibly_damaging(0.784) TCGA-FD-A3B8-01 12 100476855 100476855 G C UHRF1BP1L Nonsense_Mutation p.S449* 0.04 TCGA-FD-A3B8-01 12 417057 417057 T C KDM5A Missense_Mutation p.I1165V 0.04 tolerated(1) benign(0.012) TCGA-FD-A3B8-01 12 49230553 49230553 C G DDX23 Missense_Mutation p.K345N 0.04 deleterious(0.05) benign(0.038) TCGA-FD-A3B8-01 13 23905175 23905175 G C SACS Missense_Mutation p.F4280L 0.04 probably_damaging(0.952) TCGA-FD-A3B8-01 14 35871254 35871254 C T NFKBIA Missense_Mutation p.D307N 0.09 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B8-01 14 42356424 42356424 G A LRFN5 Missense_Mutation p.R199Q 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A3B8-01 14 74401048 74401048 C G FAM161B Missense_Mutation p.E682Q 0.06 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-FD-A3B8-01 15 41689076 41689076 C A NDUFAF1 Missense_Mutation p.G61V 0.03 deleterious_low_confidence(0.02) possibly_damaging(0.634) TCGA-FD-A3B8-01 15 69328242 69328242 C G NOX5 Missense_Mutation p.S385C 0.03 deleterious(0) probably_damaging(0.992) TCGA-FD-A3B8-01 17 10608569 10608569 G A ADPRM Missense_Mutation p.G109E 0.07 deleterious(0) probably_damaging(1) TCGA-FD-A3B8-01 17 42458417 42458417 G A ITGA2B Missense_Mutation p.A408V 0.07 deleterious(0.01) possibly_damaging(0.803) TCGA-FD-A3B8-01 17 52993262 52993262 C G TOM1L1 Intron 0.05 TCGA-FD-A3B8-01 17 59560439 59560439 G A TBX4 Silent p.E400E 0.08 TCGA-FD-A3B8-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.06 TCGA-FD-A3B8-01 19 39226178 39226178 G T CAPN12 Silent p.I530I 0.11 TCGA-FD-A3B8-01 19 48305091 48305091 C G TPRX1 Missense_Mutation p.E393Q 0.03 deleterious_low_confidence(0.02) benign(0.427) TCGA-FD-A3B8-01 1 161487799 161487799 G C FCGR2A Missense_Mutation p.R272T 0.08 tolerated(0.2) possibly_damaging(0.879) TCGA-FD-A3B8-01 1 161821558 161821558 G A ATF6 Missense_Mutation p.E456K 0.03 tolerated(0.55) benign(0.338) TCGA-FD-A3B8-01 1 179308589 179308589 G A SOAT1 Missense_Mutation p.D136N 0.04 tolerated(0.77) benign(0.029) TCGA-FD-A3B8-01 1 190067075 190067075 C G BRINP3 3'UTR 0.05 TCGA-FD-A3B8-01 1 8419925 8419925 C T RERE Missense_Mutation p.E1173K 0.09 unknown(0) TCGA-FD-A3B8-01 20 391159 391159 C G RBCK1 Intron 0.05 TCGA-FD-A3B8-01 22 41545867 41545867 C T EP300 Missense_Mutation p.H828Y 0.07 unknown(0) TCGA-FD-A3B8-01 22 41545870 41545870 C T EP300 Nonsense_Mutation p.Q829* 0.07 TCGA-FD-A3B8-01 2 152543972 152543972 C G NEB Missense_Mutation p.K866N 0.04 probably_damaging(0.996) TCGA-FD-A3B8-01 2 29443607 29443607 G T ALK Missense_Mutation p.L1204I 0.06 deleterious(0.02) possibly_damaging(0.708) TCGA-FD-A3B8-01 3 196730882 196730882 G A MFI2 Missense_Mutation p.A676V 0.03 tolerated(0.16) benign(0.038) TCGA-FD-A3B8-01 3 51749893 51749893 G A GRM2 Missense_Mutation p.A702T 0.06 tolerated(0.1) benign(0.034) TCGA-FD-A3B8-01 4 126412493 126412493 C G FAT4 Missense_Mutation p.S4839C 0.04 probably_damaging(0.997) TCGA-FD-A3B8-01 5 140167577 140167577 C T PCDHA1 Missense_Mutation p.P568S 0.05 tolerated_low_confidence(0.11) benign(0.02) TCGA-FD-A3B8-01 5 150867635 150867635 G T SLC36A1 Silent p.P417P 0.06 TCGA-FD-A3B8-01 5 180668594 180668594 C G GNB2L1 Silent p.L109L 0.05 TCGA-FD-A3B8-01 5 33588860 33588860 C T ADAMTS12 Silent p.E903E 0.17 TCGA-FD-A3B8-01 6 35426085 35426085 G T FANCE Silent p.L327L 0.06 TCGA-FD-A3B8-01 6 38834595 38834595 C G DNAH8 Missense_Mutation p.I1995M 0.10 benign(0.072) TCGA-FD-A3B8-01 7 120740099 120740099 C T CPED1 Missense_Mutation p.S290L 0.09 deleterious(0) probably_damaging(0.946) TCGA-FD-A3B8-01 7 129945685 129945685 G A CPA4 Silent p.P172P 0.04 TCGA-FD-A3B8-01 7 149425660 149425660 C G KRBA1 Silent p.L507L 0.03 TCGA-FD-A3B8-01 7 44924329 44924329 C T PURB Missense_Mutation p.G207S 0.07 tolerated(0.68) probably_damaging(0.998) TCGA-FD-A3B8-01 8 41573364 41573364 C T ANK1 Missense_Mutation p.D503N 0.08 deleterious(0) probably_damaging(0.998) TCGA-FD-A3B8-01 8 73849986 73849986 G C KCNB2 Missense_Mutation p.R799T 0.09 tolerated_low_confidence(0.52) benign(0.048) TCGA-FD-A3B8-01 9 107267011 107267011 C G OR13F1 Silent p.A156A 0.04 TCGA-FD-A3B8-01 9 131186476 131186476 G C CERCAM Missense_Mutation p.Q162H 0.04 deleterious(0.03) possibly_damaging(0.498) TCGA-FD-A3B8-01 9 4688587 4688587 G A CDC37L1 Silent p.E163E 0.12 TCGA-FD-A3B8-01 9 88557196 88557196 G A NAA35 Missense_Mutation p.R41Q 0.04 tolerated(0.12) benign(0.003) TCGA-FD-A3B8-01 X 30872793 30872793 G C TAB3 Missense_Mutation p.P330R 0.10 deleterious(0.05) possibly_damaging(0.626) TCGA-FD-A3B8-01 X 57619475 57619475 C T ZXDB Missense_Mutation p.R332W 0.17 deleterious(0) probably_damaging(0.981) TCGA-FD-A3B8-01 X 77372877 77372877 C T PGK1 Silent p.V162V 0.08 TCGA-FD-A3N5-01 10 118764613 118764613 A G KIAA1598 5'UTR 0.56 TCGA-FD-A3N5-01 10 119044045 119044045 A T PDZD8 Missense_Mutation p.S733R 0.68 deleterious(0) probably_damaging(0.998) TCGA-FD-A3N5-01 10 129903242 129903242 G A MKI67 Nonsense_Mutation p.Q2288* 0.69 TCGA-FD-A3N5-01 10 134912182 134912182 T A GPR123 Missense_Mutation p.L57Q 0.67 deleterious(0) possibly_damaging(0.901) TCGA-FD-A3N5-01 10 13655788 13655788 T C PRPF18 Silent p.Y209Y 0.20 TCGA-FD-A3N5-01 10 3162099 3162099 C T PFKP Silent p.L516L 0.28 TCGA-FD-A3N5-01 10 44112556 44112556 G A ZNF485 Silent p.Q355Q 0.20 TCGA-FD-A3N5-01 10 46969378 46969378 A G SYT15 Missense_Mutation p.L28P 0.23 deleterious(0) probably_damaging(0.982) TCGA-FD-A3N5-01 10 64911926 64911926 C G NRBF2 Silent p.A44A 0.15 TCGA-FD-A3N5-01 10 73574769 73574769 C T CDH23 Missense_Mutation p.R1027C 0.15 deleterious_low_confidence(0) benign(0.224) TCGA-FD-A3N5-01 10 75634270 75634270 C T CAMK2G 5'UTR 0.26 TCGA-FD-A3N5-01 10 7621948 7621948 C A ITIH5 Silent p.R396R 0.53 TCGA-FD-A3N5-01 10 91065822 91065822 A - IFIT2 Frame_Shift_Del p.V38Yfs*23 0.28 TCGA-FD-A3N5-01 10 96025625 96025625 C T PLCE1 Silent p.P1397P 0.83 TCGA-FD-A3N5-01 11 118368671 118368671 T G KMT2A Nonsense_Mutation p.Y1895* 0.29 TCGA-FD-A3N5-01 11 122929417 122929417 G A HSPA8 Missense_Mutation p.A482V 0.44 deleterious_low_confidence(0.02) benign(0.016) TCGA-FD-A3N5-01 11 19253864 19253864 A G E2F8 Missense_Mutation p.I328T 0.60 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 11 285201 285201 A G NLRP6 Missense_Mutation p.Q859R 0.33 tolerated(0.41) benign(0.002) TCGA-FD-A3N5-01 11 3026647 3026647 C T CARS Silent p.V722V 0.42 TCGA-FD-A3N5-01 11 30914479 30914479 T C DCDC1 Missense_Mutation p.I1653M 0.21 tolerated(0.12) possibly_damaging(0.506) TCGA-FD-A3N5-01 11 35287040 35287040 T C SLC1A2 Intron 0.23 TCGA-FD-A3N5-01 11 45891186 45891186 C T CRY2 Missense_Mutation p.P359S 0.22 deleterious(0.03) possibly_damaging(0.821) TCGA-FD-A3N5-01 11 55111294 55111294 G A OR4A16 Missense_Mutation p.M206I 0.13 tolerated_low_confidence(0.58) benign(0.034) TCGA-FD-A3N5-01 11 5799737 5799737 T A OR52N5 Missense_Mutation p.Y43F 0.55 deleterious(0.03) possibly_damaging(0.756) TCGA-FD-A3N5-01 11 63233662 63233662 T C HRASLS5 Missense_Mutation p.I223V 0.25 tolerated(1) benign(0.014) TCGA-FD-A3N5-01 11 64085714 64085714 G A PRDX5 Silent p.L9L 0.22 TCGA-FD-A3N5-01 11 64480980 64480980 C A NRXN2 Silent p.A64A 0.71 TCGA-FD-A3N5-01 11 65547232 65547232 T A AP5B1 Silent p.A244A 0.56 TCGA-FD-A3N5-01 11 6621449 6621449 C T RRP8 Missense_Mutation p.G433E 0.54 tolerated(0.15) probably_damaging(0.921) TCGA-FD-A3N5-01 11 6652344 6652344 T A DCHS1 Silent p.T1290T 0.39 TCGA-FD-A3N5-01 11 67816717 67816717 C T TCIRG1 Missense_Mutation p.L615F 0.22 deleterious(0) probably_damaging(0.993) TCGA-FD-A3N5-01 11 68207303 68207303 G T LRP5 Silent p.G1469G 0.49 TCGA-FD-A3N5-01 11 76915135 76915135 A G MYO7A Missense_Mutation p.M1781V 0.22 deleterious(0) benign(0.029) TCGA-FD-A3N5-01 11 89867894 89867894 A G NAALAD2 5'UTR 0.19 TCGA-FD-A3N5-01 12 103246694 103246694 G A PAH Silent p.G247G 0.39 TCGA-FD-A3N5-01 12 108912880 108912880 A G FICD Silent p.V335V 0.53 TCGA-FD-A3N5-01 12 120288005 120288005 G T CIT Silent p.A163A 0.44 TCGA-FD-A3N5-01 12 120288006 120288006 G T CIT Missense_Mutation p.A163D 0.44 deleterious(0) probably_damaging(0.977) TCGA-FD-A3N5-01 12 121947735 121947735 C A KDM2B Nonsense_Mutation p.E428* 0.29 TCGA-FD-A3N5-01 12 125497182 125497182 G A BRI3BP Missense_Mutation p.V106I 0.19 deleterious(0.05) benign(0.106) TCGA-FD-A3N5-01 12 39763563 39763563 G T KIF21A Missense_Mutation p.P140T 0.29 deleterious(0) probably_damaging(0.971) TCGA-FD-A3N5-01 12 44917077 44917077 A G NELL2 Silent p.C715C 0.33 TCGA-FD-A3N5-01 12 46287258 46287258 A T ARID2 Missense_Mutation p.N1735Y 0.11 tolerated(0.24) possibly_damaging(0.639) TCGA-FD-A3N5-01 12 49488197 49488197 G A DHH Silent p.R33R 0.28 TCGA-FD-A3N5-01 12 52646073 52646073 C T KRT7 3'Flank 0.25 TCGA-FD-A3N5-01 12 54765302 54765302 T C ZNF385A Missense_Mutation p.K207E 0.53 deleterious(0) probably_damaging(0.997) TCGA-FD-A3N5-01 12 56515604 56515604 T C ZC3H10 Missense_Mutation p.Y420H 0.59 deleterious(0) probably_damaging(0.916) TCGA-FD-A3N5-01 12 57572754 57572754 G T LRP1 Missense_Mutation p.C1563F 0.42 probably_damaging(0.997) TCGA-FD-A3N5-01 12 57598266 57598266 C T LRP1 Silent p.G3675G 0.22 TCGA-FD-A3N5-01 12 57919889 57919889 G C MBD6 Missense_Mutation p.G380R 0.48 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3N5-01 12 62785202 62785202 G A USP15 Silent p.R742R 0.66 TCGA-FD-A3N5-01 12 6471317 6471317 T C SCNN1A Missense_Mutation p.I318V 0.24 tolerated(0.06) possibly_damaging(0.714) TCGA-FD-A3N5-01 12 65514281 65514281 A G WIF1 Silent p.H68H 0.49 TCGA-FD-A3N5-01 12 66531850 66531850 G A TMBIM4 Missense_Mutation p.H203Y 0.19 deleterious(0.02) benign(0.111) TCGA-FD-A3N5-01 12 6881977 6881979 CCT - LAG3 5'UTR 0.31 TCGA-FD-A3N5-01 12 69746950 69746950 G A LYZ Missense_Mutation p.R133H 0.39 tolerated(1) benign(0.001) TCGA-FD-A3N5-01 12 75601613 75601613 C T KCNC2 Missense_Mutation p.G51S 0.65 tolerated(0.77) benign(0.038) TCGA-FD-A3N5-01 12 8245362 8245362 C G NECAP1 Silent p.T158T 0.42 TCGA-FD-A3N5-01 12 85694982 85694982 C A ALX1 Missense_Mutation p.T237N 0.45 tolerated(0.05) benign(0.122) TCGA-FD-A3N5-01 12 989117 989117 G T WNK1 Missense_Mutation p.A918S 0.48 tolerated(0.16) benign(0.205) TCGA-FD-A3N5-01 12 994164 994164 C T WNK1 Silent p.L1398L 0.48 TCGA-FD-A3N5-01 13 107145643 107145643 C T EFNB2 Silent p.L249L 0.35 TCGA-FD-A3N5-01 13 26129158 26129158 C A ATP8A2 Missense_Mutation p.D405E 0.22 deleterious(0) possibly_damaging(0.854) TCGA-FD-A3N5-01 13 29233297 29233297 G A POMP 5'UTR 0.16 TCGA-FD-A3N5-01 13 33628356 33628356 G C KL Missense_Mutation p.K424N 0.53 deleterious(0.01) possibly_damaging(0.776) TCGA-FD-A3N5-01 13 46917516 46917516 G A KIAA0226L 3'UTR 0.33 TCGA-FD-A3N5-01 13 47409473 47409473 G A HTR2A Silent p.S305S 0.55 TCGA-FD-A3N5-01 13 49050846 49050846 A T RB1 Nonsense_Mutation p.K844* 0.55 TCGA-FD-A3N5-01 13 95117984 95117984 C T DCT Missense_Mutation p.V256M 0.34 deleterious(0) probably_damaging(0.982) TCGA-FD-A3N5-01 13 96205153 96205168 TGTGGAAGGCGTGCGT - CLDN10 Frame_Shift_Del p.W50Pfs*29 0.24 TCGA-FD-A3N5-01 13 98641409 98641409 A G IPO5 Missense_Mutation p.H171R 0.52 tolerated(0.63) benign(0.39) TCGA-FD-A3N5-01 14 101351019 101351019 G A RTL1 Missense_Mutation p.T36M 0.24 tolerated_low_confidence(0.17) benign(0.025) TCGA-FD-A3N5-01 14 102605682 102605682 C T HSP90AA1 Silent p.R20R 0.62 TCGA-FD-A3N5-01 14 20249060 20249060 C G OR4M1 Missense_Mutation p.F193L 0.19 deleterious(0.03) benign(0.031) TCGA-FD-A3N5-01 14 21834657 21834657 G T SUPT16H Silent p.V329V 0.12 TCGA-FD-A3N5-01 14 22337541 22337541 C G TRAV13-1 Missense_Mutation p.A111G 0.42 deleterious(0.02) possibly_damaging(0.814) TCGA-FD-A3N5-01 14 23826494 23826494 T A EFS Missense_Mutation p.T543S 0.23 tolerated(0.12) benign(0.043) TCGA-FD-A3N5-01 14 24518021 24518021 G C LRRC16B 5'Flank 0.14 TCGA-FD-A3N5-01 14 31344055 31344055 G T COCH Intron 0.70 TCGA-FD-A3N5-01 14 36277976 36277976 C T RALGAPA1 Silent p.K22K 0.52 TCGA-FD-A3N5-01 14 38679681 38679681 T C SSTR1 Missense_Mutation p.Y363H 0.64 tolerated(0.53) possibly_damaging(0.601) TCGA-FD-A3N5-01 14 64408416 64408416 A G SYNE2 Missense_Mutation p.T49A 0.13 benign(0.009) TCGA-FD-A3N5-01 14 65031546 65031546 C T PPP1R36 Missense_Mutation p.A87V 0.51 deleterious(0.05) possibly_damaging(0.638) TCGA-FD-A3N5-01 14 65203599 65203599 C G PLEKHG3 Silent p.L402L 0.25 TCGA-FD-A3N5-01 14 66028339 66028339 A C FUT8 Missense_Mutation p.T20P 0.58 tolerated(0.21) possibly_damaging(0.714) TCGA-FD-A3N5-01 14 68233024 68233024 G A ZFYVE26 Silent p.D1977D 0.26 TCGA-FD-A3N5-01 14 73964942 73964942 G T HEATR4 Silent p.I821I 0.58 TCGA-FD-A3N5-01 14 75989013 75989013 G A BATF 5'UTR 0.56 TCGA-FD-A3N5-01 14 92555135 92555135 C G ATXN3 Silent p.T138T 0.59 TCGA-FD-A3N5-01 14 93401241 93401241 G A CHGA 3'UTR 0.28 TCGA-FD-A3N5-01 14 99723962 99723962 C T BCL11B Silent p.K91K 0.61 TCGA-FD-A3N5-01 15 33360066 33360066 G A FMN1 Missense_Mutation p.S7F 0.21 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3N5-01 15 35084467 35084467 A G ACTC1 Missense_Mutation p.V211A 0.59 tolerated_low_confidence(0.1) benign(0.105) TCGA-FD-A3N5-01 15 42170716 42170738 CTGGCGCCGGGCCCGTTGGGCCA - SPTBN5 Frame_Shift_Del p.V1091Gfs*2 0.38 TCGA-FD-A3N5-01 15 52534274 52534274 C A MYO5C Nonsense_Mutation p.G843* 0.48 TCGA-FD-A3N5-01 15 55632964 55632964 C T PIGB Missense_Mutation p.A334V 0.44 deleterious(0.03) possibly_damaging(0.772) TCGA-FD-A3N5-01 15 59225797 59225797 G A SLTM 5'UTR 0.33 TCGA-FD-A3N5-01 15 59548521 59548521 G A MYO1E Silent p.N98N 0.29 TCGA-FD-A3N5-01 15 75336745 75336745 G A PPCDC Missense_Mutation p.D84N 0.53 deleterious(0) possibly_damaging(0.644) TCGA-FD-A3N5-01 15 80137594 80137594 C A ST20-MTHFS Missense_Mutation p.M166I 0.13 tolerated(0.38) benign(0) TCGA-FD-A3N5-01 15 80872758 80872758 A G ARNT2 Silent p.S540S 0.19 TCGA-FD-A3N5-01 15 91769791 91769791 G T SV2B Missense_Mutation p.D100Y 0.25 deleterious(0) possibly_damaging(0.776) TCGA-FD-A3N5-01 16 15818266 15818266 G C MYH11 Missense_Mutation p.L1380V 0.21 probably_damaging(0.999) TCGA-FD-A3N5-01 16 1717398 1717398 C A CRAMP1L Missense_Mutation p.F1033L 0.23 tolerated(0.12) benign(0.155) TCGA-FD-A3N5-01 16 18806821 18806821 G A ARL6IP1 Missense_Mutation p.R125C 0.22 tolerated(0.11) benign(0.012) TCGA-FD-A3N5-01 16 28518126 28518126 G CT IL27 Frame_Shift_Ins p.Q3Rfs*87 0.22 TCGA-FD-A3N5-01 16 30390387 30390388 - AGCG SEPT1 Frame_Shift_Ins p.C298Sfs*19 0.46 TCGA-FD-A3N5-01 16 3119252 3119252 C T IL32 Silent p.L155L 0.14 TCGA-FD-A3N5-01 16 3900861 3900861 C T CREBBP Missense_Mutation p.G79S 0.24 benign(0.06) TCGA-FD-A3N5-01 16 53698905 53698905 G C RPGRIP1L Missense_Mutation p.H374D 0.46 deleterious(0.02) benign(0.066) TCGA-FD-A3N5-01 16 57685350 57685350 A T GPR56 Missense_Mutation p.L101F 0.22 tolerated(0.32) benign(0.032) TCGA-FD-A3N5-01 16 57719645 57719645 C T GPR97 Silent p.V449V 0.20 TCGA-FD-A3N5-01 16 57786831 57786831 T C KATNB1 Silent p.N282N 0.28 TCGA-FD-A3N5-01 16 58538110 58538110 C T NDRG4 Silent p.T112T 0.17 TCGA-FD-A3N5-01 16 67116228 67116228 T A CBFB Intron 0.32 TCGA-FD-A3N5-01 16 69352762 69352762 A G VPS4A Missense_Mutation p.N127S 0.22 tolerated(0.86) benign(0) TCGA-FD-A3N5-01 16 71483261 71483261 G A ZNF23 Missense_Mutation p.P223S 0.58 deleterious(0.01) possibly_damaging(0.862) TCGA-FD-A3N5-01 16 71571354 71571354 G A CHST4 Silent p.K258K 0.12 TCGA-FD-A3N5-01 16 71706188 71706188 C A PHLPP2 Silent p.L503L 0.32 TCGA-FD-A3N5-01 16 7743327 7743327 G A RBFOX1 Intron 0.17 TCGA-FD-A3N5-01 17 16701657 16701657 G T CCDC144A 3'UTR 0.17 TCGA-FD-A3N5-01 17 3379514 3379514 C G ASPA Missense_Mutation p.H21D 0.52 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 17 33905064 33905064 C T PEX12 5'UTR 0.30 TCGA-FD-A3N5-01 17 38556598 38556598 T C TOP2A Missense_Mutation p.T955A 0.43 tolerated(0.07) benign(0.142) TCGA-FD-A3N5-01 17 38560701 38560701 C A TOP2A Missense_Mutation p.D697Y 0.29 deleterious(0) probably_damaging(0.986) TCGA-FD-A3N5-01 17 39766722 39766722 T C KRT16 Missense_Mutation p.S381G 0.31 tolerated(0.16) benign(0.044) TCGA-FD-A3N5-01 17 39923802 39923802 G A JUP Silent p.A246A 0.20 TCGA-FD-A3N5-01 17 41598153 41598153 A G DHX8 Missense_Mutation p.K991R 0.57 tolerated(0.06) probably_damaging(1) TCGA-FD-A3N5-01 17 42455070 42455070 G T ITGA2B Missense_Mutation p.A728D 0.20 tolerated(0.08) probably_damaging(0.949) TCGA-FD-A3N5-01 17 42455071 42455071 C A ITGA2B Missense_Mutation p.A728S 0.19 tolerated(0.08) possibly_damaging(0.837) TCGA-FD-A3N5-01 17 55195741 55195741 G T AKAP1 Splice_Site p.X834_splice 0.49 TCGA-FD-A3N5-01 17 56327935 56327935 C G LPO Missense_Mutation p.Q245E 0.58 tolerated(0.06) benign(0.446) TCGA-FD-A3N5-01 17 56780655 56780655 T C RAD51C Missense_Mutation p.Y224H 0.26 tolerated(0.35) benign(0.008) TCGA-FD-A3N5-01 17 58040588 58040588 C T RNFT1 Missense_Mutation p.M38I 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A3N5-01 17 62021113 62021113 C T SCN4A Missense_Mutation p.R1337Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-FD-A3N5-01 17 62499626 62499626 A C DDX5 Missense_Mutation p.C191G 0.29 tolerated(1) benign(0.001) TCGA-FD-A3N5-01 17 65337149 65337149 G A PSMD12 Missense_Mutation p.S394L 0.28 deleterious(0) probably_damaging(0.964) TCGA-FD-A3N5-01 17 73043506 73043506 C T KCTD2 Missense_Mutation p.P54L 0.57 deleterious_low_confidence(0.02) probably_damaging(0.913) TCGA-FD-A3N5-01 17 73569202 73569202 C T LLGL2 Silent p.A856A 0.42 TCGA-FD-A3N5-01 17 74283886 74283886 G A QRICH2 Silent p.V1131V 0.20 TCGA-FD-A3N5-01 17 74737129 74737129 C G MFSD11 Silent p.A81A 0.36 TCGA-FD-A3N5-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.75 deleterious(0.02) probably_damaging(0.922) TCGA-FD-A3N5-01 18 20581688 20581688 A G RBBP8 Silent p.L761L 0.32 TCGA-FD-A3N5-01 18 21485588 21485588 G T LAMA3 Nonsense_Mutation p.E2240* 0.13 TCGA-FD-A3N5-01 18 25532201 25532201 A C CDH2 Silent p.G879G 0.18 TCGA-FD-A3N5-01 18 32621508 32621508 C T MAPRE2 Missense_Mutation p.P2L 0.48 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-FD-A3N5-01 18 39637870 39637870 G A PIK3C3 Missense_Mutation p.G763R 0.36 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 18 48255680 48255680 G A MAPK4 Missense_Mutation p.R407H 0.62 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-FD-A3N5-01 19 10625203 10625203 G A S1PR5 Missense_Mutation p.S162L 0.43 deleterious(0) benign(0.007) TCGA-FD-A3N5-01 19 12298627 12298627 T C ZNF136 Silent p.C478C 0.52 TCGA-FD-A3N5-01 19 12903008 12903008 A C JUNB Missense_Mutation p.K141N 0.30 deleterious(0) probably_damaging(0.996) TCGA-FD-A3N5-01 19 12903565 12903565 A G JUNB Missense_Mutation p.K327R 0.46 tolerated(0.07) possibly_damaging(0.512) TCGA-FD-A3N5-01 19 1462114 1462114 C T APC2 Silent p.I597I 0.22 TCGA-FD-A3N5-01 19 15290217 15290223 GGTCAAT - NOTCH3 Frame_Shift_Del p.I1138Sfs*132 0.50 TCGA-FD-A3N5-01 19 17012070 17012070 C G CPAMD8 Missense_Mutation p.E1622Q 0.45 deleterious(0) benign(0.248) TCGA-FD-A3N5-01 19 1785276 1785276 G C ATP8B3 Nonsense_Mutation p.Y1138* 0.14 TCGA-FD-A3N5-01 19 18555550 18555550 C A ELL 3'UTR 0.22 TCGA-FD-A3N5-01 19 20728292 20728292 G C ZNF737 Missense_Mutation p.S239R 0.42 tolerated(0.09) benign(0.352) TCGA-FD-A3N5-01 19 31769651 31769651 C T TSHZ3 Missense_Mutation p.D350N 0.23 tolerated(0.18) benign(0.298) TCGA-FD-A3N5-01 19 3534500 3534500 C T FZR1 Missense_Mutation p.R477C 0.22 deleterious(0.04) probably_damaging(0.915) TCGA-FD-A3N5-01 19 36883875 36883875 C T ZFP82 Missense_Mutation p.G456D 0.57 deleterious(0.01) possibly_damaging(0.617) TCGA-FD-A3N5-01 19 4047820 4047820 C T ZBTB7A Missense_Mutation p.G562D 0.17 deleterious_low_confidence(0.03) probably_damaging(0.931) TCGA-FD-A3N5-01 19 41634024 41634024 G A CYP2F1 3'UTR 0.26 TCGA-FD-A3N5-01 19 41765721 41765721 A G AXL Missense_Mutation p.Y866C 0.49 deleterious(0) probably_damaging(0.999) TCGA-FD-A3N5-01 19 41808694 41808694 C T HNRNPUL1 Silent p.P604P 0.23 TCGA-FD-A3N5-01 19 42402702 42402702 C G ARHGEF1 Silent p.P426P 0.28 TCGA-FD-A3N5-01 19 44777421 44777421 T C ZNF233 Missense_Mutation p.V203A 0.41 tolerated(0.08) benign(0.003) TCGA-FD-A3N5-01 19 45213839 45213839 C T CEACAM16 3'UTR 0.52 TCGA-FD-A3N5-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.25 deleterious(0) probably_damaging(0.979) TCGA-FD-A3N5-01 19 46290118 46290118 G T DMWD Missense_Mutation p.D212E 0.29 deleterious(0.04) benign(0.018) TCGA-FD-A3N5-01 19 47226204 47226204 T C STRN4 Missense_Mutation p.H597R 0.29 tolerated(0.34) benign(0.229) TCGA-FD-A3N5-01 19 47844239 47844239 G T C5AR2 Silent p.G61G 0.24 TCGA-FD-A3N5-01 19 47879304 47879304 C T DHX34 Nonsense_Mutation p.Q811* 0.24 TCGA-FD-A3N5-01 19 49217717 49217717 T A MAMSTR Missense_Mutation p.E210V 0.67 tolerated(0.1) benign(0.403) TCGA-FD-A3N5-01 19 49238543 49238543 G A RASIP1 Silent p.P363P 0.23 TCGA-FD-A3N5-01 19 49316713 49316713 C T HSD17B14 Silent p.Q213Q 0.70 TCGA-FD-A3N5-01 19 50117835 50117835 C A PRR12 Missense_Mutation p.Q1607K 0.75 unknown(0) TCGA-FD-A3N5-01 19 50315535 50315535 T C FUZ Silent p.R97R 0.31 TCGA-FD-A3N5-01 19 50735294 50735294 C T MYH14 Missense_Mutation p.R361W 0.21 deleterious(0) possibly_damaging(0.54) TCGA-FD-A3N5-01 19 52327697 52327697 C T FPR3 Silent p.H232H 0.50 TCGA-FD-A3N5-01 19 52619312 52619312 C T ZNF616 Missense_Mutation p.V369I 0.44 tolerated(0.2) benign(0.065) TCGA-FD-A3N5-01 19 53311303 53311303 G T ZNF28 Nonsense_Mutation p.Y33* 0.08 TCGA-FD-A3N5-01 19 57910511 57910511 T C ZNF548 Missense_Mutation p.C298R 0.30 deleterious(0) possibly_damaging(0.797) TCGA-FD-A3N5-01 19 57956154 57956154 C G ZNF749 Missense_Mutation p.H546Q 0.27 deleterious(0) unknown(0) TCGA-FD-A3N5-01 19 58639356 58639356 A T ZNF329 Missense_Mutation p.H505Q 0.44 deleterious(0) probably_damaging(0.992) TCGA-FD-A3N5-01 1 101362198 101362198 G A SLC30A7 Silent p.V51V 0.25 TCGA-FD-A3N5-01 1 109731742 109731742 G A KIAA1324 Nonsense_Mutation p.W425* 0.50 TCGA-FD-A3N5-01 1 110944079 110944079 T C LAMTOR5 3'UTR 0.29 TCGA-FD-A3N5-01 1 114372323 114372323 T G PTPN22 Missense_Mutation p.Q714P 0.16 deleterious(0) probably_damaging(0.981) TCGA-FD-A3N5-01 1 114442966 114442966 T C AP4B1 Missense_Mutation p.Y225C 0.43 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 1 114512680 114512680 G A HIPK1 Silent p.L958L 0.31 TCGA-FD-A3N5-01 1 120166097 120166097 A T ZNF697 Missense_Mutation p.L290Q 0.53 tolerated(0.58) benign(0.018) TCGA-FD-A3N5-01 1 120529583 120529583 C T NOTCH2 Missense_Mutation p.G292R 0.44 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 1 120906281 120906281 G A RP11-439A17.4 5'Flank 0.14 TCGA-FD-A3N5-01 1 12251945 12251945 G A TNFRSF1B Missense_Mutation p.R141H 0.53 deleterious(0.02) possibly_damaging(0.676) TCGA-FD-A3N5-01 1 13933692 13933692 A T PDPN Missense_Mutation p.D107V 0.38 tolerated(0.08) benign(0.009) TCGA-FD-A3N5-01 1 150444196 150444196 G T RPRD2 Silent p.G924G 0.51 TCGA-FD-A3N5-01 1 150980992 150980992 C G PRUNE 5'UTR 0.18 TCGA-FD-A3N5-01 1 152328005 152328005 C T FLG2 Missense_Mutation p.G753R 0.38 unknown(0) TCGA-FD-A3N5-01 1 153933091 153933091 T G SLC39A1 Missense_Mutation p.N153T 0.47 tolerated(0.3) benign(0.009) TCGA-FD-A3N5-01 1 155796703 155796703 G C GON4L Missense_Mutation p.Q208E 0.23 tolerated_low_confidence(0.13) benign(0.001) TCGA-FD-A3N5-01 1 158576875 158576875 T C OR10Z1 Missense_Mutation p.I216T 0.44 deleterious(0.01) benign(0.006) TCGA-FD-A3N5-01 1 16456035 16456035 G T EPHA2 Missense_Mutation p.R907S 0.55 tolerated(0.8) probably_damaging(0.935) TCGA-FD-A3N5-01 1 167814903 167814903 C T ADCY10 Missense_Mutation p.G969S 0.31 tolerated(0.43) benign(0.002) TCGA-FD-A3N5-01 1 17026395 17026395 C G ESPNP RNA 0.40 TCGA-FD-A3N5-01 1 179087760 179087782 AGAAGAAATCTGAGTGGCCATGT - ABL2 Frame_Shift_Del p.Y388Cfs*13 0.15 TCGA-FD-A3N5-01 1 186280667 186280667 G A PRG4 Silent p.V1244V 0.28 TCGA-FD-A3N5-01 1 197390711 197390711 G C CRB1 Missense_Mutation p.D585H 0.42 tolerated(0.06) possibly_damaging(0.777) TCGA-FD-A3N5-01 1 202569525 202569525 C T SYT2 Silent p.E293E 0.52 TCGA-FD-A3N5-01 1 202935955 202935955 C T CYB5R1 Silent p.L29L 0.18 TCGA-FD-A3N5-01 1 204124152 204124152 C T REN Missense_Mutation p.A405T 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A3N5-01 1 204587882 204587882 G A LRRN2 Silent p.F413F 0.23 TCGA-FD-A3N5-01 1 207679368 207679368 C G CR1 Missense_Mutation p.P81A 0.12 tolerated(0.75) benign(0.11) TCGA-FD-A3N5-01 1 207679369 207679369 C A CR1 Missense_Mutation p.P81Q 0.14 tolerated(0.57) benign(0.187) TCGA-FD-A3N5-01 1 207930506 207930506 G A CD46 Missense_Mutation p.R82Q 0.46 tolerated(0.73) benign(0.005) TCGA-FD-A3N5-01 1 213032442 213032442 C T FLVCR1 Silent p.F216F 0.40 TCGA-FD-A3N5-01 1 227259910 227259910 C T CDC42BPA Silent p.K942K 0.30 TCGA-FD-A3N5-01 1 233512183 233512183 C A MLK4 Missense_Mutation p.P612T 0.18 deleterious(0.04) probably_damaging(0.986) TCGA-FD-A3N5-01 1 27683217 27683233 GTGAGACCGCCTCCTTC - MAP3K6 Frame_Shift_Del p.E1124Dfs*8 0.17 TCGA-FD-A3N5-01 1 27745578 27745578 C T WASF2 Missense_Mutation p.E48K 0.18 deleterious(0) unknown(0) TCGA-FD-A3N5-01 1 28099877 28099877 G C STX12 Missense_Mutation p.R20P 0.49 deleterious(0.02) possibly_damaging(0.699) TCGA-FD-A3N5-01 1 29314319 29314319 G A EPB41 Missense_Mutation p.E124K 0.24 tolerated(0.08) benign(0.297) TCGA-FD-A3N5-01 1 36235553 36235553 C T CLSPN 5'Flank 0.23 TCGA-FD-A3N5-01 1 36367599 36367599 C A AGO1 Silent p.I397I 0.36 TCGA-FD-A3N5-01 1 3697775 3697775 G A LRRC47 Silent p.D543D 0.29 TCGA-FD-A3N5-01 1 39876847 39876847 C G KIAA0754 Missense_Mutation p.H168D 0.30 benign(0.402) TCGA-FD-A3N5-01 1 41486281 41486281 C T SLFNL1 Missense_Mutation p.E18K 0.51 deleterious_low_confidence(0.03) benign(0.017) TCGA-FD-A3N5-01 1 44490005 44490005 C G SLC6A9 5'UTR 0.30 TCGA-FD-A3N5-01 1 45120323 45120323 C T TMEM53 Missense_Mutation p.V248M 0.46 tolerated(0.12) benign(0.104) TCGA-FD-A3N5-01 1 46073334 46073334 C A NASP Missense_Mutation p.Q251K 0.15 deleterious_low_confidence(0.02) benign(0.075) TCGA-FD-A3N5-01 1 46497147 46497147 C A MAST2 Missense_Mutation p.A1026D 0.24 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-FD-A3N5-01 1 46501315 46501315 G C MAST2 Missense_Mutation p.W1658C 0.27 deleterious_low_confidence(0.03) benign(0.018) TCGA-FD-A3N5-01 1 46769446 46769446 T C UQCRH Missense_Mutation p.L3P 0.26 deleterious(0) probably_damaging(0.94) TCGA-FD-A3N5-01 1 47110887 47110887 A G ATPAF1 Silent p.F233F 0.21 TCGA-FD-A3N5-01 1 52442691 52442691 A C RAB3B Silent p.V33V 0.64 TCGA-FD-A3N5-01 1 52821951 52821951 C G CC2D1B Missense_Mutation p.R660P 0.23 deleterious(0.02) possibly_damaging(0.774) TCGA-FD-A3N5-01 1 53542872 53542872 C G PODN Missense_Mutation p.L246V 0.23 deleterious(0.02) probably_damaging(0.97) TCGA-FD-A3N5-01 1 54354635 54354635 T A YIPF1 5'UTR 0.56 TCGA-FD-A3N5-01 1 62677049 62677049 C A L1TD1 3'UTR 0.25 TCGA-FD-A3N5-01 1 6315004 6315004 C T GPR153 5'UTR 0.22 TCGA-FD-A3N5-01 1 64021038 64021038 T C EFCAB7 Missense_Mutation p.W356R 0.63 deleterious(0) probably_damaging(0.99) TCGA-FD-A3N5-01 1 74835181 74835181 G A FPGT-TNNI3K Missense_Mutation p.A641T 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-FD-A3N5-01 1 78050334 78050334 C T ZZZ3 Silent p.Q504Q 0.28 TCGA-FD-A3N5-01 1 86590911 86590911 G A COL24A1 Missense_Mutation p.L370F 0.56 tolerated(0.48) benign(0.004) TCGA-FD-A3N5-01 20 13856714 13856714 G C SEL1L2 Silent p.A358A 0.19 TCGA-FD-A3N5-01 20 31688261 31688261 A G BPIFB4 Silent p.T533T 0.24 TCGA-FD-A3N5-01 20 33735053 33735053 G A EDEM2 Silent p.F3F 0.58 TCGA-FD-A3N5-01 20 39981435 39981435 T C LPIN3 Intron 0.31 TCGA-FD-A3N5-01 20 40049605 40049605 T A CHD6 Silent p.V1890V 0.52 TCGA-FD-A3N5-01 20 43374640 43374640 A T KCNK15 Missense_Mutation p.E30V 0.17 deleterious(0) probably_damaging(0.978) TCGA-FD-A3N5-01 20 43607147 43607147 A T STK4 Missense_Mutation p.Q60H 0.28 deleterious(0.02) probably_damaging(0.927) TCGA-FD-A3N5-01 20 60581776 60581776 G A TAF4 Silent p.S671S 0.51 TCGA-FD-A3N5-01 20 8862423 8862423 T G PLCB1 Missense_Mutation p.V1193G 0.46 tolerated_low_confidence(0.36) benign(0) TCGA-FD-A3N5-01 21 35497670 35497670 G A MRPS6 Silent p.T25T 0.51 TCGA-FD-A3N5-01 21 38390265 38390265 T G RIPPLY3 Missense_Mutation p.F111V 0.27 deleterious(0) possibly_damaging(0.859) TCGA-FD-A3N5-01 21 43786556 43786556 T C TFF1 Missense_Mutation p.M17V 0.29 tolerated(1) benign(0) TCGA-FD-A3N5-01 21 45656811 45656811 C A ICOSLG Silent p.V115V 0.39 TCGA-FD-A3N5-01 21 47700482 47700482 G A MCM3AP Missense_Mutation p.A484V 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A3N5-01 22 20074109 20074109 A G DGCR8 Missense_Mutation p.N208S 0.73 tolerated(0.06) benign(0.077) TCGA-FD-A3N5-01 22 36902136 36902136 T C FOXRED2 Missense_Mutation p.R112G 0.64 deleterious(0.03) benign(0.013) TCGA-FD-A3N5-01 22 37318275 37318275 C A CSF2RB Missense_Mutation p.S9Y 0.78 tolerated(1) benign(0.001) TCGA-FD-A3N5-01 22 43218291 43218291 G C ARFGAP3 Missense_Mutation p.S266C 0.62 deleterious(0.03) benign(0.353) TCGA-FD-A3N5-01 2 100343579 100343579 C T AFF3 Missense_Mutation p.A376T 0.44 tolerated(0.33) benign(0.007) TCGA-FD-A3N5-01 2 103068609 103068609 A G IL18RAP Missense_Mutation p.T590A 0.24 tolerated(0.81) benign(0.003) TCGA-FD-A3N5-01 2 107073498 107073498 C T RGPD3 Missense_Mutation p.G112R 0.40 deleterious(0.05) benign(0.063) TCGA-FD-A3N5-01 2 109380497 109380497 G T RANBP2 Missense_Mutation p.D1168Y 0.10 deleterious(0) possibly_damaging(0.756) TCGA-FD-A3N5-01 2 11758611 11758611 C T GREB1 Missense_Mutation p.L1204F 0.50 tolerated(0.2) possibly_damaging(0.724) TCGA-FD-A3N5-01 2 133540952 133540952 A G NCKAP5 Silent p.T1144T 0.20 TCGA-FD-A3N5-01 2 136409597 136409597 C T R3HDM1 Missense_Mutation p.P640S 0.50 tolerated(0.09) benign(0.002) TCGA-FD-A3N5-01 2 14774804 14774804 C T FAM84A Missense_Mutation p.A234V 0.63 tolerated(0.09) benign(0.102) TCGA-FD-A3N5-01 2 153575447 153575447 G A ARL6IP6 Silent p.R103R 0.45 TCGA-FD-A3N5-01 2 160876633 160876633 A G PLA2R1 Missense_Mutation p.V479A 0.33 tolerated(0.15) probably_damaging(0.999) TCGA-FD-A3N5-01 2 166231239 166231239 T G SCN2A Missense_Mutation p.N1339K 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A3N5-01 2 167056069 167056069 T C SCN9A Missense_Mutation p.I1683V 0.25 tolerated(0.07) probably_damaging(0.954) TCGA-FD-A3N5-01 2 168100155 168100155 G A XIRP2 Missense_Mutation p.M751I 0.12 benign(0.008) TCGA-FD-A3N5-01 2 168100156 168100156 C T XIRP2 Silent p.L752L 0.12 TCGA-FD-A3N5-01 2 170393745 170393745 T C FASTKD1 Missense_Mutation p.H727R 0.44 deleterious(0.01) possibly_damaging(0.906) TCGA-FD-A3N5-01 2 179472309 179472309 A C TTN Silent p.P17702P 0.25 TCGA-FD-A3N5-01 2 187371546 187371546 A G ZC3H15 Missense_Mutation p.Y358C 0.25 tolerated(0.17) possibly_damaging(0.662) TCGA-FD-A3N5-01 2 187533614 187533614 T C ITGAV Silent p.T853T 0.40 TCGA-FD-A3N5-01 2 191064920 191064920 T C C2orf88 3'UTR 0.60 TCGA-FD-A3N5-01 2 192194756 192194756 G T MYO1B Splice_Site p.X116_splice 0.41 TCGA-FD-A3N5-01 2 196581642 196581642 G A SLC39A10 Missense_Mutation p.D660N 0.18 deleterious(0.02) possibly_damaging(0.879) TCGA-FD-A3N5-01 2 202593268 202593268 G A ALS2 Silent p.F936F 0.11 TCGA-FD-A3N5-01 2 202899544 202899544 G C FZD7 Silent p.T58T 0.24 TCGA-FD-A3N5-01 2 220166979 220166979 T C PTPRN Missense_Mutation p.R292G 0.71 tolerated(0.08) benign(0) TCGA-FD-A3N5-01 2 228113226 228113226 C T COL4A3 Missense_Mutation p.P179L 0.59 probably_damaging(1) TCGA-FD-A3N5-01 2 234460031 234460031 A G USP40 Silent p.F288F 0.89 TCGA-FD-A3N5-01 2 239054468 239054468 T C KLHL30 Missense_Mutation p.I382T 0.77 deleterious(0.04) possibly_damaging(0.794) TCGA-FD-A3N5-01 2 275176 275176 C T ACP1 Silent p.L90L 0.12 TCGA-FD-A3N5-01 2 3623453 3623453 G A RPS7 Missense_Mutation p.R41K 0.26 tolerated(0.32) benign(0.005) TCGA-FD-A3N5-01 2 48061799 48061799 C T FBXO11 Missense_Mutation p.D285N 0.33 tolerated(0.39) benign(0.002) TCGA-FD-A3N5-01 2 48809237 48809237 A G STON1-GTF2A1L Missense_Mutation p.K489E 0.57 tolerated(0.06) benign(0.345) TCGA-FD-A3N5-01 2 54080390 54080390 G T GPR75 Missense_Mutation p.P502T 0.22 deleterious_low_confidence(0) benign(0.016) TCGA-FD-A3N5-01 2 65248205 65248205 C T SLC1A4 Silent p.P508P 0.15 TCGA-FD-A3N5-01 2 74762468 74762468 G C LOXL3 Silent p.T510T 0.48 TCGA-FD-A3N5-01 2 85823723 85823723 G T RNF181 Missense_Mutation p.K56N 0.41 deleterious(0) probably_damaging(0.938) TCGA-FD-A3N5-01 3 113563350 113563350 G A GRAMD1C Missense_Mutation p.V10M 0.26 deleterious_low_confidence(0.01) benign(0.347) TCGA-FD-A3N5-01 3 124540305 124540305 C T ITGB5 Missense_Mutation p.R266Q 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 3 126220791 126220791 C G UROC1 Missense_Mutation p.R301S 0.07 tolerated(0.08) benign(0.001) TCGA-FD-A3N5-01 3 130381085 130381085 C G COL6A6 Silent p.G2145G 0.15 TCGA-FD-A3N5-01 3 132408036 132408036 T A NPHP3 Missense_Mutation p.Y922F 0.55 tolerated(0.09) probably_damaging(0.997) TCGA-FD-A3N5-01 3 13659771 13659771 G T FBLN2 Missense_Mutation p.R642L 0.27 tolerated(0.68) benign(0.037) TCGA-FD-A3N5-01 3 140277676 140277676 C G CLSTN2 Missense_Mutation p.A673G 0.37 tolerated(0.36) benign(0.001) TCGA-FD-A3N5-01 3 148889891 148889891 C G HPS3 Nonsense_Mutation p.S966* 0.62 TCGA-FD-A3N5-01 3 15727600 15727600 T G ANKRD28 Missense_Mutation p.N663T 0.26 tolerated(0.07) possibly_damaging(0.718) TCGA-FD-A3N5-01 3 172064198 172064198 A T FNDC3B Missense_Mutation p.T778S 0.19 tolerated(0.14) benign(0.006) TCGA-FD-A3N5-01 3 172227013 172227013 A G TNFSF10 Missense_Mutation p.S138P 0.15 tolerated(0.61) benign(0) TCGA-FD-A3N5-01 3 189690704 189690704 T C LEPREL1 Missense_Mutation p.Y553C 0.59 deleterious(0) probably_damaging(0.928) TCGA-FD-A3N5-01 3 190167626 190167626 T C TMEM207 5'UTR 0.29 TCGA-FD-A3N5-01 3 195453217 195453217 C G MUC20 Silent p.L581L 0.11 TCGA-FD-A3N5-01 3 21478519 21478519 A T ZNF385D Missense_Mutation p.C206S 0.23 deleterious(0) probably_damaging(0.966) TCGA-FD-A3N5-01 3 47484415 47484415 T C SCAP Silent p.A23A 0.20 TCGA-FD-A3N5-01 3 50144929 50144929 C T RBM5 Missense_Mutation p.S323L 0.28 tolerated(0.1) benign(0) TCGA-FD-A3N5-01 3 5229970 5229970 C T AC026202.1 Missense_Mutation p.A5T 0.33 possibly_damaging(0.691) TCGA-FD-A3N5-01 4 120446823 120446823 G - PDE5A Frame_Shift_Del p.I556Lfs*35 0.20 TCGA-FD-A3N5-01 4 125590169 125590169 G C ANKRD50 Missense_Mutation p.F1421L 0.50 tolerated_low_confidence(0.57) benign(0.003) TCGA-FD-A3N5-01 4 138452651 138452651 G A PCDH18 Missense_Mutation p.L198F 0.17 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 4 15626988 15626988 A C FBXL5 Silent p.P579P 0.43 TCGA-FD-A3N5-01 4 159789770 159789770 G T FNIP2 Missense_Mutation p.G661V 0.52 tolerated(0.05) benign(0.02) TCGA-FD-A3N5-01 4 162697123 162697123 G A FSTL5 Silent p.D171D 0.33 TCGA-FD-A3N5-01 4 26322582 26322582 G A RBPJ Intron 0.26 TCGA-FD-A3N5-01 4 3449359 3449359 G A HGFAC Splice_Site p.X499_splice 0.41 TCGA-FD-A3N5-01 4 36231078 36231078 T C ARAP2 Missense_Mutation p.I11V 0.20 deleterious(0.04) benign(0.257) TCGA-FD-A3N5-01 4 44177154 44177154 T C KCTD8 Missense_Mutation p.S359G 0.30 tolerated(0.23) possibly_damaging(0.899) TCGA-FD-A3N5-01 4 48577219 48577219 T C FRYL Missense_Mutation p.I921V 0.14 tolerated(0.47) benign(0.002) TCGA-FD-A3N5-01 4 48859275 48859275 C G OCIAD1 Missense_Mutation p.T198R 0.50 tolerated(0.06) probably_damaging(0.976) TCGA-FD-A3N5-01 4 54232001 54232001 C A SCFD2 Silent p.L36L 0.49 TCGA-FD-A3N5-01 4 71068501 71068501 A G ODAM Missense_Mutation p.Q226R 0.32 deleterious(0.02) possibly_damaging(0.607) TCGA-FD-A3N5-01 4 71693625 71693625 T C GRSF1 Missense_Mutation p.H360R 0.25 tolerated(0.39) benign(0.013) TCGA-FD-A3N5-01 4 85731400 85731400 T C WDFY3 Missense_Mutation p.E662G 0.26 tolerated(0.1) probably_damaging(0.992) TCGA-FD-A3N5-01 4 96222795 96222795 C T UNC5C Missense_Mutation p.G151D 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 5 108680459 108680459 C G PJA2 Missense_Mutation p.S609T 0.54 tolerated(1) benign(0.109) TCGA-FD-A3N5-01 5 129520908 129520908 G A CHSY3 Missense_Mutation p.M691I 0.67 tolerated(0.44) benign(0.017) TCGA-FD-A3N5-01 5 131008068 131008068 T C FNIP1 Missense_Mutation p.D690G 0.68 tolerated_low_confidence(0.18) benign(0.236) TCGA-FD-A3N5-01 5 140531611 140531611 C T PCDHB6 Silent p.D591D 0.54 TCGA-FD-A3N5-01 5 142513586 142513586 C G ARHGAP26 Missense_Mutation p.R585G 0.75 deleterious(0.05) benign(0.003) TCGA-FD-A3N5-01 5 150947267 150947267 T A FAT2 Missense_Mutation p.N409I 0.77 possibly_damaging(0.714) TCGA-FD-A3N5-01 5 154250228 154250228 A G CNOT8 Missense_Mutation p.M107V 0.65 tolerated(0.14) benign(0.073) TCGA-FD-A3N5-01 5 32048677 32048677 T C PDZD2 Missense_Mutation p.Y518H 0.54 tolerated(0.18) probably_damaging(0.999) TCGA-FD-A3N5-01 5 32089375 32089375 G T PDZD2 Nonsense_Mutation p.E1941* 0.52 TCGA-FD-A3N5-01 5 35779431 35779431 T G SPEF2 Nonsense_Mutation p.L1477* 0.54 TCGA-FD-A3N5-01 5 40972587 40972587 G C C7 Silent p.V655V 0.09 TCGA-FD-A3N5-01 5 41045898 41045898 G C MROH2B Missense_Mutation p.Q596E 0.54 tolerated(0.18) benign(0.004) TCGA-FD-A3N5-01 5 43277375 43277375 A T NIM1K Missense_Mutation p.E170V 0.28 deleterious(0) probably_damaging(0.988) TCGA-FD-A3N5-01 5 76129480 76129480 G C F2RL1 Missense_Mutation p.D350H 0.70 deleterious(0) benign(0.373) TCGA-FD-A3N5-01 5 80689943 80689943 G A ACOT12 5'UTR 0.67 TCGA-FD-A3N5-01 6 107011686 107011686 T G AIM1 Silent p.S1654S 0.49 TCGA-FD-A3N5-01 6 109765030 109765042 GGCCCAGGATCTG - SMPD2 Frame_Shift_Del p.D401Sfs*? 0.11 TCGA-FD-A3N5-01 6 111136211 111136211 C T CDK19 Splice_Site p.X43_splice 0.34 TCGA-FD-A3N5-01 6 122775333 122775333 A G SERINC1 Silent p.I138I 0.50 TCGA-FD-A3N5-01 6 148865308 148865308 C A SASH1 Missense_Mutation p.S901Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.526) TCGA-FD-A3N5-01 6 151626879 151626879 T C AKAP12 Intron 0.39 TCGA-FD-A3N5-01 6 154762424 154762424 A C CNKSR3 Splice_Site p.X169_splice 0.17 TCGA-FD-A3N5-01 6 159188477 159188477 G - EZR Frame_Shift_Del p.P471Rfs*11 0.27 TCGA-FD-A3N5-01 6 27101228 27101228 G A HIST1H2AG Silent p.K126K 0.33 TCGA-FD-A3N5-01 6 30029233 30029233 G T ZNRD1 5'UTR 0.43 TCGA-FD-A3N5-01 6 30071549 30071549 C T TRIM31 Missense_Mutation p.G348R 0.24 tolerated(0.25) benign(0) TCGA-FD-A3N5-01 6 30672554 30672554 G T MDC1 Missense_Mutation p.P1469H 0.43 deleterious(0) possibly_damaging(0.832) TCGA-FD-A3N5-01 6 31239079 31239079 G A HLA-C Silent p.D130D 0.14 TCGA-FD-A3N5-01 6 32169985 32169985 G T NOTCH4 Missense_Mutation p.P1208Q 0.38 tolerated(0.22) probably_damaging(0.983) TCGA-FD-A3N5-01 6 3225883 3225883 A C TUBB2B Missense_Mutation p.M147R 0.16 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-FD-A3N5-01 6 33623613 33623613 T C ITPR3 Silent p.T77T 0.41 TCGA-FD-A3N5-01 6 36483157 36483157 G A STK38 Silent p.I209I 0.47 TCGA-FD-A3N5-01 6 42019188 42019188 G C TAF8 Missense_Mutation p.E47Q 0.22 deleterious(0.01) probably_damaging(0.94) TCGA-FD-A3N5-01 6 43156452 43156452 A C CUL9 Silent p.R727R 0.32 TCGA-FD-A3N5-01 6 43479877 43479877 G A YIPF3 3'UTR 0.17 TCGA-FD-A3N5-01 6 43488129 43488129 G A POLR1C Missense_Mutation p.E207K 0.18 tolerated(0.11) possibly_damaging(0.866) TCGA-FD-A3N5-01 6 43571701 43571701 C T POLH Silent p.T279T 0.40 TCGA-FD-A3N5-01 6 82936933 82936933 T G IBTK Silent p.G210G 0.33 TCGA-FD-A3N5-01 6 90353822 90353822 A G MDN1 Missense_Mutation p.Y5565H 0.19 unknown(0) TCGA-FD-A3N5-01 6 90422326 90422326 G A MDN1 Silent p.N2466N 0.44 TCGA-FD-A3N5-01 6 91254347 91254347 A C MAP3K7 Nonsense_Mutation p.Y405* 0.19 TCGA-FD-A3N5-01 7 100417868 100417868 G C EPHB4 Missense_Mutation p.P287A 0.33 tolerated(0.32) benign(0.122) TCGA-FD-A3N5-01 7 101459309 101459309 A C CUX1 5'UTR 0.36 TCGA-FD-A3N5-01 7 106921779 106921779 G A COG5 Missense_Mutation p.T545I 0.37 deleterious(0) possibly_damaging(0.729) TCGA-FD-A3N5-01 7 113519130 113519130 T G PPP1R3A Missense_Mutation p.T673P 0.44 deleterious(0.03) benign(0.086) TCGA-FD-A3N5-01 7 120381638 120381638 T C KCND2 Silent p.A443A 0.37 TCGA-FD-A3N5-01 7 131832748 131832748 C G PLXNA4 Missense_Mutation p.G1592A 0.12 deleterious(0.03) benign(0.006) TCGA-FD-A3N5-01 7 138978726 138978726 C A UBN2 Missense_Mutation p.H1331Q 0.33 tolerated_low_confidence(0.11) benign(0.078) TCGA-FD-A3N5-01 7 142650920 142650920 C A KEL Missense_Mutation p.V350L 0.35 tolerated(0.08) benign(0.026) TCGA-FD-A3N5-01 7 148769267 148769267 G A ZNF786 Silent p.N199N 0.33 TCGA-FD-A3N5-01 7 148787775 148787775 C G ZNF786 5'UTR 0.24 TCGA-FD-A3N5-01 7 150033872 150033872 G A LRRC61 5'UTR 0.39 TCGA-FD-A3N5-01 7 16834567 16834567 T C AGR2 Silent p.T157T 0.20 TCGA-FD-A3N5-01 7 42949751 42949751 A T C7orf25 Missense_Mutation p.L308Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-FD-A3N5-01 7 43436489 43436489 G C HECW1 Splice_Site p.X211_splice 0.22 TCGA-FD-A3N5-01 7 47892757 47892757 A G PKD1L1 Missense_Mutation p.V1643A 0.27 tolerated(0.09) benign(0.178) TCGA-FD-A3N5-01 7 6086641 6086641 T C EIF2AK1 Silent p.G177G 0.68 TCGA-FD-A3N5-01 7 65439384 65439384 A C GUSB Missense_Mutation p.M430R 0.40 deleterious(0) probably_damaging(0.997) TCGA-FD-A3N5-01 7 6662346 6662346 G A ZNF853 Missense_Mutation p.G575D 0.76 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A3N5-01 7 75513098 75513100 GAG - RHBDD2 In_Frame_Del p.R225del 0.39 TCGA-FD-A3N5-01 7 77006665 77006665 C T GSAP Missense_Mutation p.E207K 0.15 deleterious(0) possibly_damaging(0.65) TCGA-FD-A3N5-01 7 99129564 99129564 A C ZKSCAN5 Missense_Mutation p.T738P 0.49 tolerated(0.1) probably_damaging(0.95) TCGA-FD-A3N5-01 7 99375680 99375680 T G CYP3A4 Missense_Mutation p.E63D 0.34 tolerated(0.11) benign(0.003) TCGA-FD-A3N5-01 8 105263981 105263981 C T RIMS2 Missense_Mutation p.P1328L 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FD-A3N5-01 8 114290867 114290867 G C CSMD3 Silent p.T156T 0.21 TCGA-FD-A3N5-01 8 124714886 124714886 C A ANXA13 Missense_Mutation p.G102V 0.21 deleterious(0) probably_damaging(0.949) TCGA-FD-A3N5-01 8 143745928 143745928 C T JRK RNA 0.34 TCGA-FD-A3N5-01 8 145579794 145579794 G T FBXL6 Missense_Mutation p.Q436K 0.37 tolerated(0.77) benign(0.071) TCGA-FD-A3N5-01 8 16859521 16859521 G A FGF20 Silent p.V7V 0.70 TCGA-FD-A3N5-01 8 26509890 26509890 C T DPYSL2 Missense_Mutation p.R467C 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3N5-01 8 48817520 48817520 T C PRKDC Missense_Mutation p.Y984C 0.47 probably_damaging(0.94) TCGA-FD-A3N5-01 8 57025641 57025641 C T MOS Missense_Mutation p.A301T 0.30 tolerated(0.41) benign(0.019) TCGA-FD-A3N5-01 8 67803255 67803255 T C MCMDC2 Missense_Mutation p.I410T 0.60 deleterious(0.03) benign(0.004) TCGA-FD-A3N5-01 9 104499615 104499615 A G GRIN3A Missense_Mutation p.L216P 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A3N5-01 9 107593948 107593948 C T ABCA1 Missense_Mutation p.R557Q 0.43 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 9 109694734 109694734 G T ZNF462 Missense_Mutation p.R2007L 0.23 possibly_damaging(0.519) TCGA-FD-A3N5-01 9 112963549 112963549 G T C9orf152 Missense_Mutation p.D133E 0.20 tolerated(1) benign(0.001) TCGA-FD-A3N5-01 9 115652137 115652137 T - SLC46A2 Frame_Shift_Del p.A276Qfs*28 0.28 TCGA-FD-A3N5-01 9 117846585 117846585 G T TNC Silent p.I678I 0.25 TCGA-FD-A3N5-01 9 123421791 123421791 C T MEGF9 Missense_Mutation p.G222R 0.43 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 9 130280165 130280165 C T FAM129B Missense_Mutation p.M215I 0.42 deleterious(0.02) benign(0.288) TCGA-FD-A3N5-01 9 139890163 139890163 C G CLIC3 Missense_Mutation p.R27P 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A3N5-01 9 140052946 140052946 G T GRIN1 Missense_Mutation p.V383L 0.24 deleterious(0.05) benign(0.003) TCGA-FD-A3N5-01 9 140083594 140083594 G A SSNA1 Silent p.L43L 0.42 TCGA-FD-A3N5-01 9 140508609 140508609 C G ARRDC1 Silent p.A187A 0.49 TCGA-FD-A3N5-01 9 27548365 27548365 A C C9orf72 Missense_Mutation p.L439V 0.11 deleterious(0) probably_damaging(0.996) TCGA-FD-A3N5-01 9 34557969 34557969 C A CNTFR Missense_Mutation p.E111D 0.34 tolerated(0.13) possibly_damaging(0.625) TCGA-FD-A3N5-01 9 5231528 5231528 C T INSL4 Missense_Mutation p.A2V 0.48 tolerated(0.43) benign(0.001) TCGA-FD-A3N5-01 9 69200173 69200173 G T FOXD4L6 3'UTR 0.28 TCGA-FD-A3N5-01 9 79635344 79635344 G A FOXB2 Silent p.A258A 0.45 TCGA-FD-A3N5-01 9 93629433 93629433 A G SYK Missense_Mutation p.I289M 0.45 tolerated(0.09) benign(0.413) TCGA-FD-A3N5-01 9 96051184 96051184 C G WNK2 Missense_Mutation p.P1420R 0.58 unknown(0) TCGA-FD-A3N5-01 X 14863348 14863348 C A FANCB Silent p.R519R 0.71 TCGA-FD-A3N5-01 X 44922670 44922670 A T KDM6A Nonsense_Mutation p.R511* 0.86 TCGA-FD-A3N5-01 X 49957631 49957631 A C AKAP4 Missense_Mutation p.M578R 0.60 deleterious(0.02) possibly_damaging(0.485) TCGA-FD-A3N5-01 X 77387128 77387139 ATCATCTTCATG - TAF9B In_Frame_Del p.H242_D245del 0.65 TCGA-FD-A3N6-01 10 104353808 104353808 G A SUFU Missense_Mutation p.D248N 0.48 tolerated(0.28) benign(0.056) TCGA-FD-A3N6-01 10 127503611 127503613 TTA - UROS In_Frame_Del p.N78del 0.43 TCGA-FD-A3N6-01 10 7658000 7658000 T A ITIH5 Missense_Mutation p.N295I 0.06 deleterious(0) probably_damaging(0.997) TCGA-FD-A3N6-01 11 102742561 102742561 C T MMP12 RNA 0.46 TCGA-FD-A3N6-01 11 108142000 108142000 C T ATM Missense_Mutation p.R982C 0.46 deleterious(0) possibly_damaging(0.893) TCGA-FD-A3N6-01 11 126147596 126147596 C T FOXRED1 3'UTR 0.45 TCGA-FD-A3N6-01 11 1271029 1271029 A G MUC5B Missense_Mutation p.T4307A 0.37 benign(0.001) TCGA-FD-A3N6-01 11 34130334 34130334 C T NAT10 Missense_Mutation p.R52W 0.46 deleterious(0) probably_damaging(0.991) TCGA-FD-A3N6-01 11 35287050 35287050 G A SLC1A2 Intron 0.40 TCGA-FD-A3N6-01 11 3681295 3681295 C T ART1 Silent p.H182H 0.47 TCGA-FD-A3N6-01 11 47510398 47510398 G A CELF1 Nonsense_Mutation p.Q84* 0.46 TCGA-FD-A3N6-01 11 47834457 47834457 C T NUP160 Silent p.L643L 0.27 TCGA-FD-A3N6-01 11 58722335 58722335 G T GLYATL1 Missense_Mutation p.E124D 0.38 tolerated(0.28) possibly_damaging(0.475) TCGA-FD-A3N6-01 11 6412803 6412803 T G SMPD1 Missense_Mutation p.W170G 0.23 deleterious(0.02) benign(0.008) TCGA-FD-A3N6-01 11 8111718 8111718 G A TUB Missense_Mutation p.E120K 0.38 deleterious(0.02) probably_damaging(0.994) TCGA-FD-A3N6-01 12 101510477 101510477 A C ANO4 Missense_Mutation p.N789T 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-FD-A3N6-01 12 120582583 120582583 C G GCN1L1 Missense_Mutation p.E1738Q 0.27 possibly_damaging(0.608) TCGA-FD-A3N6-01 12 121177198 121177198 G A ACADS Missense_Mutation p.E396K 0.41 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 12 123011447 123011447 C T RSRC2 5'UTR 0.24 TCGA-FD-A3N6-01 12 48174214 48174214 G A SLC48A1 3'UTR 0.25 TCGA-FD-A3N6-01 12 49440084 49440084 G T KMT2D Nonsense_Mutation p.Y1514* 0.50 TCGA-FD-A3N6-01 12 55420884 55420884 C G NEUROD4 Missense_Mutation p.L221V 0.26 tolerated(0.32) benign(0.024) TCGA-FD-A3N6-01 12 56667537 56667537 G A CS Missense_Mutation p.P355L 0.39 deleterious(0) probably_damaging(0.999) TCGA-FD-A3N6-01 12 6078455 6078455 G T VWF Missense_Mutation p.Q2551K 0.33 tolerated(0.1) benign(0.292) TCGA-FD-A3N6-01 12 6140638 6140638 C G VWF Missense_Mutation p.G931A 0.43 tolerated(0.08) probably_damaging(0.952) TCGA-FD-A3N6-01 13 101277794 101277794 G A TMTC4 Missense_Mutation p.R611C 0.35 deleterious(0.05) benign(0.247) TCGA-FD-A3N6-01 13 113514618 113514618 G A ATP11A Silent p.A915A 0.43 TCGA-FD-A3N6-01 13 114312442 114312444 CTC - ATP4B In_Frame_Del p.E6del 0.23 TCGA-FD-A3N6-01 13 21721473 21721473 C T SAP18 Missense_Mutation p.P171S 0.29 deleterious(0.01) probably_damaging(0.944) TCGA-FD-A3N6-01 13 29599292 29599292 G T MTUS2 Nonsense_Mutation p.E163* 0.08 TCGA-FD-A3N6-01 14 34029385 34029385 A G NPAS3 Missense_Mutation p.E176G 0.35 deleterious(0) possibly_damaging(0.728) TCGA-FD-A3N6-01 14 34269007 34269007 C T NPAS3 Silent p.P498P 0.37 TCGA-FD-A3N6-01 14 44976106 44976106 G T FSCB Missense_Mutation p.H29N 0.38 deleterious(0.03) possibly_damaging(0.78) TCGA-FD-A3N6-01 14 47121001 47121001 G A RPL10L 5'UTR 0.54 TCGA-FD-A3N6-01 14 74205879 74205879 G A ELMSAN1 Missense_Mutation p.P278L 0.06 deleterious(0.01) benign(0) TCGA-FD-A3N6-01 15 27572024 27572024 G A GABRG3 Missense_Mutation p.M113I 0.20 tolerated(0.33) probably_damaging(0.968) TCGA-FD-A3N6-01 15 34111989 34111989 A T RYR3 Missense_Mutation p.Y3580F 0.39 possibly_damaging(0.887) TCGA-FD-A3N6-01 15 49064779 49064779 G T CEP152 Missense_Mutation p.L563M 0.38 tolerated(0.1) probably_damaging(1) TCGA-FD-A3N6-01 15 88678344 88678344 C T NTRK3 Missense_Mutation p.E398K 0.29 tolerated(0.67) benign(0.001) TCGA-FD-A3N6-01 15 90996128 90996128 C G IQGAP1 Silent p.L428L 0.32 TCGA-FD-A3N6-01 15 91306271 91306271 A T BLM Missense_Mutation p.K653M 0.45 deleterious(0) possibly_damaging(0.827) TCGA-FD-A3N6-01 16 18532200 18532200 C G NOMO2 Missense_Mutation p.E720D 0.12 tolerated(0.17) benign(0.178) TCGA-FD-A3N6-01 16 2223291 2223291 G T TRAF7 Missense_Mutation p.M301I 0.38 tolerated(0.09) benign(0.184) TCGA-FD-A3N6-01 16 313303 313303 C T ITFG3 Silent p.A338A 0.44 TCGA-FD-A3N6-01 16 50745145 50745145 G A NOD2 Silent p.E441E 0.40 TCGA-FD-A3N6-01 16 51173864 51173864 G C SALL1 Missense_Mutation p.R757G 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 16 66426056 66426056 C T CDH5 Silent p.Y329Y 0.39 TCGA-FD-A3N6-01 16 75276374 75276374 C T BCAR1 Silent p.P255P 0.37 TCGA-FD-A3N6-01 16 85010832 85010832 C G ZDHHC7 Splice_Site p.X244_splice 0.37 TCGA-FD-A3N6-01 17 2600068 2600068 G A CLUH Silent p.S672S 0.45 TCGA-FD-A3N6-01 17 42457471 42457471 G A ITGA2B Missense_Mutation p.R551W 0.39 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 17 46628308 46628308 G A HOXB3 Silent p.S228S 0.43 TCGA-FD-A3N6-01 17 56389469 56389469 C T BZRAP1 Missense_Mutation p.G905S 0.49 tolerated(1) benign(0.004) TCGA-FD-A3N6-01 17 79990672 79990672 G A RAC3 Missense_Mutation p.D65N 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-FD-A3N6-01 18 13884797 13884797 A G MC2R Silent p.L241L 0.51 TCGA-FD-A3N6-01 18 19239300 19239300 G C ABHD3 Missense_Mutation p.L225V 0.28 tolerated(0.06) benign(0.125) TCGA-FD-A3N6-01 18 28648098 28648098 T C DSC2 Silent p.G863G 0.43 TCGA-FD-A3N6-01 18 7906503 7906503 G C PTPRM Missense_Mutation p.V157L 0.30 tolerated(0.17) benign(0.017) TCGA-FD-A3N6-01 19 14865894 14865894 C T EMR2 Missense_Mutation p.G488S 0.39 tolerated(0.51) benign(0.05) TCGA-FD-A3N6-01 19 23543001 23543001 G T ZNF91 Missense_Mutation p.T927K 0.40 tolerated(0.96) benign(0.029) TCGA-FD-A3N6-01 19 33623141 33623141 C T WDR88 Silent p.S22S 0.37 TCGA-FD-A3N6-01 19 34263626 34263626 C A CHST8 Missense_Mutation p.F311L 0.43 deleterious(0) probably_damaging(0.967) TCGA-FD-A3N6-01 19 3644235 3644235 G C PIP5K1C Missense_Mutation p.P454A 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3N6-01 19 41601848 41601848 C A CYP2A13 3'UTR 0.37 TCGA-FD-A3N6-01 19 47920169 47920169 A G MEIS3 Silent p.A79A 0.61 TCGA-FD-A3N6-01 19 49357317 49357317 C G PLEKHA4 Missense_Mutation p.D375H 0.15 deleterious(0) probably_damaging(0.968) TCGA-FD-A3N6-01 19 9070793 9070793 G A MUC16 Silent p.L5551L 0.40 TCGA-FD-A3N6-01 1 1153018 1153018 C G SDF4 Missense_Mutation p.Q321H 0.21 tolerated(0.19) benign(0.443) TCGA-FD-A3N6-01 1 1153047 1153047 C G SDF4 Missense_Mutation p.E312Q 0.25 tolerated(0.07) probably_damaging(0.954) TCGA-FD-A3N6-01 1 1420551 1420551 G C ATAD3B Missense_Mutation p.Q302H 0.27 deleterious(0.05) benign(0.014) TCGA-FD-A3N6-01 1 144864293 144864293 C G PDE4DIP Missense_Mutation p.E1934D 0.16 deleterious(0.01) benign(0.045) TCGA-FD-A3N6-01 1 161180099 161180099 G A NDUFS2 Silent p.L262L 0.06 TCGA-FD-A3N6-01 1 174652675 174652675 G A RABGAP1L Missense_Mutation p.D614N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A3N6-01 1 174983913 174983913 C T MRPS14 Missense_Mutation p.M93I 0.20 tolerated(0.4) benign(0.012) TCGA-FD-A3N6-01 1 183711264 183711264 C T RGL1 5'UTR 0.38 TCGA-FD-A3N6-01 1 19432306 19432306 G A UBR4 Missense_Mutation p.R4142W 0.45 probably_damaging(0.973) TCGA-FD-A3N6-01 1 213058637 213058639 AGA - FLVCR1 In_Frame_Del p.E367del 0.38 TCGA-FD-A3N6-01 1 233397829 233397829 C G PCNXL2 Missense_Mutation p.G148R 0.28 tolerated(0.1) benign(0.048) TCGA-FD-A3N6-01 1 32196442 32196442 G A BAI2 Missense_Mutation p.R1447C 0.26 deleterious(0) probably_damaging(0.998) TCGA-FD-A3N6-01 1 34080113 34080113 C T CSMD2 Missense_Mutation p.V2002M 0.40 deleterious(0.02) probably_damaging(0.976) TCGA-FD-A3N6-01 1 36898083 36898083 G A OSCP1 Silent p.F125F 0.43 TCGA-FD-A3N6-01 1 45525884 45525884 C T ZSWIM5 Missense_Mutation p.D330N 0.30 deleterious(0) unknown(0) TCGA-FD-A3N6-01 1 46972828 46972828 G A DMBX1 Missense_Mutation p.R49H 0.49 deleterious(0) probably_damaging(0.999) TCGA-FD-A3N6-01 1 94668041 94668041 A T ARHGAP29 Intron 0.54 TCGA-FD-A3N6-01 20 41514478 41514478 C A PTPRT Missense_Mutation p.E61D 0.09 tolerated(0.27) possibly_damaging(0.476) TCGA-FD-A3N6-01 20 57829164 57829164 C T ZNF831 Missense_Mutation p.S1467L 0.37 tolerated(0.15) benign(0.012) TCGA-FD-A3N6-01 20 61867533 61867533 C A BIRC7 Missense_Mutation p.R29S 0.25 deleterious(0.01) benign(0.016) TCGA-FD-A3N6-01 22 20052091 20052091 C T TANGO2 Missense_Mutation p.A246V 0.41 tolerated(0.16) benign(0.02) TCGA-FD-A3N6-01 22 24086629 24086629 G A ZNF70 Silent p.F233F 0.36 TCGA-FD-A3N6-01 22 29694812 29694812 C T EWSR1 Missense_Mutation p.R508W 0.39 tolerated(0.1) unknown(0) TCGA-FD-A3N6-01 2 101622832 101622832 G A RPL31 Intron 0.45 TCGA-FD-A3N6-01 2 105859134 105859134 C T GPR45 Silent p.F273F 0.39 TCGA-FD-A3N6-01 2 165984600 165984600 G C SCN3A Silent p.L978L 0.54 TCGA-FD-A3N6-01 2 178098960 178098960 C A NFE2L2 Missense_Mutation p.D29Y 0.35 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 2 202150030 202150030 C T CASP8 Nonsense_Mutation p.R491* 0.31 TCGA-FD-A3N6-01 2 206023620 206023620 G A PARD3B Intron 0.40 TCGA-FD-A3N6-01 2 212578341 212578341 G A ERBB4 Missense_Mutation p.R306C 0.40 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 2 234676526 234676526 C T UGT1A10 Missense_Mutation p.S340L 0.41 tolerated(0.16) possibly_damaging(0.637) TCGA-FD-A3N6-01 2 27499703 27499703 C A DNAJC5G Missense_Mutation p.S36Y 0.60 deleterious(0) possibly_damaging(0.793) TCGA-FD-A3N6-01 2 56419936 56419936 G A CCDC85A Missense_Mutation p.A201T 0.35 tolerated(0.27) benign(0.015) TCGA-FD-A3N6-01 2 73447860 73447860 C T SMYD5 Silent p.P139P 0.35 TCGA-FD-A3N6-01 3 121168259 121168259 G A POLQ Silent p.I2389I 0.42 TCGA-FD-A3N6-01 3 183225981 183225981 C T KLHL6 Missense_Mutation p.E259K 0.36 tolerated(0.13) benign(0.26) TCGA-FD-A3N6-01 3 184045027 184045027 G A EIF4G1 Missense_Mutation p.G1158D 0.44 tolerated(0.09) benign(0.184) TCGA-FD-A3N6-01 3 48604616 48604616 C T COL7A1 Missense_Mutation p.R2685Q 0.07 probably_damaging(1) TCGA-FD-A3N6-01 3 48956264 48956265 - A ARIH2OS Frame_Shift_Ins p.G107Wfs*28 0.22 TCGA-FD-A3N6-01 3 52387489 52387489 G A DNAH1 Missense_Mutation p.R1107Q 0.48 benign(0.354) TCGA-FD-A3N6-01 4 121675749 121675749 T G PRDM5 Missense_Mutation p.K528Q 0.43 tolerated(0.59) benign(0.091) TCGA-FD-A3N6-01 4 147561325 147561325 G T POU4F2 Missense_Mutation p.G199W 0.36 deleterious(0) probably_damaging(0.998) TCGA-FD-A3N6-01 4 178260984 178260984 A G NEIL3 Missense_Mutation p.I225M 0.42 deleterious(0.01) benign(0.152) TCGA-FD-A3N6-01 4 25146682 25146682 G A SEPSECS Missense_Mutation p.A293V 0.31 deleterious(0) probably_damaging(0.963) TCGA-FD-A3N6-01 4 2943974 2943974 G C NOP14 Missense_Mutation p.L666V 0.40 tolerated(0.06) probably_damaging(0.955) TCGA-FD-A3N6-01 4 436242 436242 C T ZNF721 Missense_Mutation p.E672K 0.36 tolerated(0.76) benign(0.115) TCGA-FD-A3N6-01 4 96199412 96199412 C T UNC5C Missense_Mutation p.E198K 0.32 deleterious(0.01) possibly_damaging(0.791) TCGA-FD-A3N6-01 5 140753889 140753889 G A PCDHGA6 Missense_Mutation p.R80Q 0.09 deleterious_low_confidence(0.05) benign(0.177) TCGA-FD-A3N6-01 5 153026569 153026569 G T GRIA1 Missense_Mutation p.C111F 0.34 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 5 159822089 159822089 G A C5orf54 Nonsense_Mutation p.Q137* 0.39 TCGA-FD-A3N6-01 5 175111277 175111277 G T HRH2 Silent p.G347G 0.31 TCGA-FD-A3N6-01 5 180219508 180219508 T C MGAT1 Missense_Mutation p.Y155C 0.38 probably_damaging(0.998) TCGA-FD-A3N6-01 5 45695966 45695966 G A HCN1 Missense_Mutation p.P77L 0.33 tolerated_low_confidence(0.23) benign(0.062) TCGA-FD-A3N6-01 5 61688040 61688040 G C DIMT1 Silent p.L250L 0.27 TCGA-FD-A3N6-01 6 110300832 110300832 G A GPR6 Missense_Mutation p.A173T 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A3N6-01 6 143086067 143086067 C T HIVEP2 Missense_Mutation p.R1796Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-FD-A3N6-01 7 100680145 100680145 C T MUC17 Silent p.S1816S 0.38 TCGA-FD-A3N6-01 7 102582734 102582734 C T LRRC17 Intron 0.25 TCGA-FD-A3N6-01 7 11076172 11076172 G A PHF14 Missense_Mutation p.R577H 0.08 deleterious(0) probably_damaging(0.996) TCGA-FD-A3N6-01 7 117254746 117254746 C A CFTR Silent p.S1149S 0.56 TCGA-FD-A3N6-01 7 151900066 151900066 G A KMT2C Nonsense_Mutation p.R1349* 0.68 TCGA-FD-A3N6-01 7 35709832 35709832 C T HERPUD2 Missense_Mutation p.S111N 0.46 tolerated(0.11) benign(0.002) TCGA-FD-A3N6-01 7 87031442 87031442 G A ABCB4 Silent p.V1277V 0.36 TCGA-FD-A3N6-01 7 95499296 95499296 C T DYNC1I1 Missense_Mutation p.T176M 0.56 tolerated(0.19) possibly_damaging(0.72) TCGA-FD-A3N6-01 7 99693412 99693412 C T MCM7 Missense_Mutation p.R527Q 0.27 deleterious(0.05) benign(0.073) TCGA-FD-A3N6-01 8 142146846 142146846 C T DENND3 Missense_Mutation p.P34L 0.57 tolerated(0.07) possibly_damaging(0.449) TCGA-FD-A3N6-01 8 143763436 143763436 C A PSCA Nonsense_Mutation p.C77* 0.22 TCGA-FD-A3N6-01 8 143960498 143960498 G T CYP11B1 Silent p.P115P 0.06 TCGA-FD-A3N6-01 8 144358777 144358777 G A GLI4 Missense_Mutation p.E312K 0.29 tolerated(0.12) probably_damaging(0.999) TCGA-FD-A3N6-01 8 144921077 144921077 G A NRBP2 Missense_Mutation p.S241F 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A3N6-01 8 144993567 144993567 G A PLEC Silent p.I3611I 0.04 TCGA-FD-A3N6-01 8 144993569 144993569 T C PLEC Missense_Mutation p.I3611V 0.05 possibly_damaging(0.482) TCGA-FD-A3N6-01 8 25902277 25902277 G A EBF2 Silent p.V33V 0.36 TCGA-FD-A3N6-01 8 54791910 54791910 C A RGS20 Missense_Mutation p.F86L 0.17 deleterious_low_confidence(0.04) benign(0.396) TCGA-FD-A3N6-01 9 104189787 104189787 G A ALDOB Missense_Mutation p.R173C 0.43 deleterious(0.02) probably_damaging(1) TCGA-FD-A3N6-01 9 123857265 123857265 C A CNTRL Missense_Mutation p.R150S 0.05 benign(0.347) TCGA-FD-A3N6-01 9 140329491 140329491 C T ENTPD8 Missense_Mutation p.D455N 0.27 deleterious(0) possibly_damaging(0.471) TCGA-FD-A3N6-01 9 140772647 140772647 G A CACNA1B Missense_Mutation p.A88T 0.37 deleterious(0.03) benign(0.068) TCGA-FD-A3N6-01 9 27286302 27286302 G T EQTN Silent p.I180I 0.25 TCGA-FD-A3N6-01 9 35674260 35674260 T G CA9 Missense_Mutation p.S102A 0.27 tolerated_low_confidence(0.69) benign(0.001) TCGA-FD-A3N6-01 9 97365773 97365773 C A FBP1 Missense_Mutation p.V303L 0.21 tolerated(0.12) benign(0.022) TCGA-FD-A3N6-01 X 118586947 118586947 G C SLC25A43 Missense_Mutation p.Q315H 0.42 deleterious(0) probably_damaging(0.987) TCGA-FD-A3N6-01 X 118786913 118786913 A C SEPT6 Missense_Mutation p.H144Q 0.41 tolerated(0.08) probably_damaging(0.998) TCGA-FD-A3N6-01 X 131212674 131212674 C T FRMD7 Missense_Mutation p.M457I 0.27 tolerated(0.27) benign(0.001) TCGA-FD-A3N6-01 X 13779316 13779316 G A OFD1 Silent p.P791P 0.49 TCGA-FD-A3N6-01 X 48924786 48924786 C - CCDC120 Frame_Shift_Del p.S345Pfs*8 0.28 TCGA-FD-A3N6-01 X 68060460 68060460 C T EFNB1 Missense_Mutation p.P335L 0.50 deleterious(0) probably_damaging(0.942) TCGA-FD-A3N6-01 X 77254160 77254160 C T ATP7A Missense_Mutation p.R508W 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 10 103339942 103339942 G C POLL Intron 0.54 TCGA-FD-A3NA-01 10 108338909 108338909 G C SORCS1 Missense_Mutation p.Q1158E 0.46 tolerated(0.8) benign(0.008) TCGA-FD-A3NA-01 10 28897274 28897274 C T WAC Missense_Mutation p.P360L 0.46 deleterious(0) probably_damaging(0.998) TCGA-FD-A3NA-01 10 50873030 50873030 G A CHAT Missense_Mutation p.E729K 0.47 tolerated(0.79) benign(0.011) TCGA-FD-A3NA-01 10 5204813 5204813 C T AKR1CL1 Intron 0.34 TCGA-FD-A3NA-01 10 5798670 5798670 G A FAM208B Missense_Mutation p.R2234K 0.33 tolerated(0.23) benign(0.038) TCGA-FD-A3NA-01 10 93252132 93252132 G C HECTD2 Missense_Mutation p.L441F 0.43 deleterious(0) possibly_damaging(0.81) TCGA-FD-A3NA-01 11 1017507 1017507 G A MUC6 Missense_Mutation p.S1765F 0.03 unknown(0) TCGA-FD-A3NA-01 11 104815563 104815563 C G CASP4 Missense_Mutation p.E351Q 0.17 deleterious(0.01) possibly_damaging(0.738) TCGA-FD-A3NA-01 11 122775122 122775123 - A C11orf63 Frame_Shift_Ins p.R281Kfs*35 0.35 TCGA-FD-A3NA-01 11 134180464 134180464 G C GLB1L3 Splice_Site p.X367_splice 0.23 TCGA-FD-A3NA-01 11 14839736 14839736 G A PDE3B Silent p.L510L 0.20 TCGA-FD-A3NA-01 11 55681259 55681259 G A OR5W2 Missense_Mutation p.S267F 0.13 deleterious(0.01) possibly_damaging(0.503) TCGA-FD-A3NA-01 11 61978051 61978051 G A SCGB2A1 Silent p.L74L 0.23 TCGA-FD-A3NA-01 11 63072221 63072221 G C SLC22A10 Missense_Mutation p.L486F 0.12 tolerated(0.16) benign(0.049) TCGA-FD-A3NA-01 11 73814325 73814325 C T C2CD3 Missense_Mutation p.V811M 0.17 deleterious(0) probably_damaging(0.997) TCGA-FD-A3NA-01 11 74053678 74053678 G A PGM2L1 Missense_Mutation p.S487L 0.20 deleterious(0) benign(0.067) TCGA-FD-A3NA-01 11 77669853 77669853 C T INTS4 Missense_Mutation p.E246K 0.15 deleterious(0.01) possibly_damaging(0.793) TCGA-FD-A3NA-01 11 85445049 85445049 G C SYTL2 Missense_Mutation p.I440M 0.32 tolerated(0.07) benign(0.27) TCGA-FD-A3NA-01 11 89885588 89885588 G A NAALAD2 Silent p.Q244Q 0.16 TCGA-FD-A3NA-01 11 93471531 93471531 G T TAF1D Nonsense_Mutation p.S68* 0.13 TCGA-FD-A3NA-01 12 32977077 32977077 C T PKP2 Missense_Mutation p.A570T 0.35 deleterious(0) benign(0.004) TCGA-FD-A3NA-01 12 51632610 51632610 G C DAZAP2 5'UTR 0.20 TCGA-FD-A3NA-01 12 52574698 52574698 G A KRT80 Nonsense_Mutation p.Q187* 0.35 TCGA-FD-A3NA-01 12 52574708 52574708 G A KRT80 Silent p.F183F 0.34 TCGA-FD-A3NA-01 12 55523876 55523876 C T OR9K2 Silent p.I108I 0.19 TCGA-FD-A3NA-01 12 56600123 56600123 C T RNF41 3'UTR 0.12 TCGA-FD-A3NA-01 12 56721825 56721825 A T PAN2 Missense_Mutation p.M202K 0.13 deleterious(0) benign(0.092) TCGA-FD-A3NA-01 12 62986494 62986494 C G MON2 Missense_Mutation p.P1707A 0.33 tolerated(0.19) possibly_damaging(0.55) TCGA-FD-A3NA-01 12 6705273 6705273 C G CHD4 Missense_Mutation p.L641F 0.26 deleterious(0.03) probably_damaging(0.961) TCGA-FD-A3NA-01 12 6705294 6705294 C G CHD4 Missense_Mutation p.K634N 0.27 deleterious(0.02) probably_damaging(0.937) TCGA-FD-A3NA-01 12 7640120 7640120 C A CD163 Missense_Mutation p.A629S 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 12 7805382 7805382 G T APOBEC1 Missense_Mutation p.L32I 0.29 deleterious(0.04) probably_damaging(0.92) TCGA-FD-A3NA-01 13 99459962 99459962 C G DOCK9 Missense_Mutation p.D1837H 0.19 deleterious(0) possibly_damaging(0.828) TCGA-FD-A3NA-01 14 106641807 106641807 G A IGHV1-18 Missense_Mutation p.S36L 0.51 deleterious(0.03) benign(0.397) TCGA-FD-A3NA-01 14 23528293 23528293 C T ACIN1 3'UTR 0.57 TCGA-FD-A3NA-01 14 95078751 95078751 G A SERPINA3 5'UTR 0.36 TCGA-FD-A3NA-01 15 22368545 22368545 A G OR4M2 5'UTR 0.16 TCGA-FD-A3NA-01 15 48779383 48779383 C T FBN1 Missense_Mutation p.E1160K 0.12 benign(0.16) TCGA-FD-A3NA-01 15 48888548 48888548 C G FBN1 Missense_Mutation p.G157A 0.04 probably_damaging(0.996) TCGA-FD-A3NA-01 15 50782585 50782585 G C USP8 Missense_Mutation p.K699N 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-FD-A3NA-01 15 64446167 64446167 C T SNX22 Silent p.F142F 0.16 TCGA-FD-A3NA-01 15 65316099 65316099 C T MTFMT Silent p.P151P 0.18 TCGA-FD-A3NA-01 15 70979935 70979935 T - UACA Frame_Shift_Del p.C183Vfs*4 0.16 TCGA-FD-A3NA-01 15 74554886 74554886 G C CCDC33 Missense_Mutation p.E97D 0.44 deleterious(0.02) possibly_damaging(0.801) TCGA-FD-A3NA-01 15 80465390 80465390 C T FAH Silent p.L247L 0.19 TCGA-FD-A3NA-01 15 90328526 90328526 A G ANPEP 3'UTR 0.19 TCGA-FD-A3NA-01 15 99452048 99452048 G A IGF1R Missense_Mutation p.R461H 0.12 tolerated(0.09) benign(0.32) TCGA-FD-A3NA-01 16 24583041 24583041 A G RBBP6 Missense_Mutation p.K1552E 0.24 tolerated_low_confidence(0.06) unknown(0) TCGA-FD-A3NA-01 16 26147147 26147147 A C HS3ST4 Missense_Mutation p.K317Q 0.30 tolerated(0.07) benign(0.035) TCGA-FD-A3NA-01 16 2813668 2813668 G A SRRM2 Missense_Mutation p.E1047K 0.13 unknown(0) TCGA-FD-A3NA-01 16 30764566 30764566 G A PHKG2 Missense_Mutation p.E114K 0.26 deleterious(0) possibly_damaging(0.522) TCGA-FD-A3NA-01 16 3100442 3100442 G A MMP25 Missense_Mutation p.D186N 0.35 deleterious(0) probably_damaging(0.978) TCGA-FD-A3NA-01 16 31090265 31090265 G A ZNF646 Missense_Mutation p.E874K 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A3NA-01 16 31090309 31090309 G C ZNF646 Missense_Mutation p.M888I 0.20 deleterious(0.03) probably_damaging(0.916) TCGA-FD-A3NA-01 16 58582460 58582460 G C CNOT1 Intron 0.30 TCGA-FD-A3NA-01 16 69776286 69776286 C T NOB1 Silent p.R396R 0.21 TCGA-FD-A3NA-01 16 70190728 70190728 C T PDPR Silent p.F862F 0.13 TCGA-FD-A3NA-01 16 70796493 70796493 C G VAC14 Missense_Mutation p.D441H 0.14 deleterious(0) probably_damaging(0.969) TCGA-FD-A3NA-01 17 16326850 16326850 C A TRPV2 Missense_Mutation p.N231K 0.37 deleterious(0.02) probably_damaging(0.99) TCGA-FD-A3NA-01 17 29701127 29701127 G C NF1 Missense_Mutation p.R2825T 0.15 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-FD-A3NA-01 17 3181440 3181440 C A OR3A2 Missense_Mutation p.G264C 0.09 deleterious(0.03) benign(0.209) TCGA-FD-A3NA-01 17 33318055 33318055 G C LIG3 Missense_Mutation p.L321F 0.36 deleterious(0) probably_damaging(0.988) TCGA-FD-A3NA-01 17 33586688 33586688 G C SLFN5 Missense_Mutation p.E327Q 0.19 deleterious(0.05) benign(0.099) TCGA-FD-A3NA-01 17 40705230 40705230 G A HSD17B1 Silent p.T62T 0.36 TCGA-FD-A3NA-01 17 43226833 43226833 G C HEXIM1 Missense_Mutation p.Q92H 0.11 deleterious_low_confidence(0.05) benign(0.004) TCGA-FD-A3NA-01 17 43227260 43227260 G T HEXIM1 Missense_Mutation p.D235Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A3NA-01 17 44626216 44626216 C T LRRC37A2 Silent p.F1237F 0.10 TCGA-FD-A3NA-01 17 48047109 48047109 G A DLX4 Missense_Mutation p.E93K 0.11 tolerated(0.2) benign(0.005) TCGA-FD-A3NA-01 17 48941096 48941096 C T TOB1 Missense_Mutation p.D95N 0.09 deleterious(0) probably_damaging(0.98) TCGA-FD-A3NA-01 17 55183156 55183156 C T AKAP1 Missense_Mutation p.L111F 0.37 tolerated(0.08) benign(0.14) TCGA-FD-A3NA-01 17 56056663 56056663 C T VEZF1 Missense_Mutation p.E330K 0.32 tolerated_low_confidence(0.74) benign(0.002) TCGA-FD-A3NA-01 17 60142582 60142582 C T MED13 5'UTR 0.37 TCGA-FD-A3NA-01 17 73231253 73231253 C G NUP85 Nonsense_Mutation p.S609* 0.12 TCGA-FD-A3NA-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.30 TCGA-FD-A3NA-01 17 76498013 76498013 C G DNAH17-AS1 3'UTR 0.10 TCGA-FD-A3NA-01 17 76547693 76547693 C T DNAH17 Missense_Mutation p.R772Q 0.09 possibly_damaging(0.453) TCGA-FD-A3NA-01 18 60642723 60642723 G C PHLPP1 Missense_Mutation p.L1283F 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 19 19339025 19339025 G A NCAN Missense_Mutation p.D866N 0.19 tolerated(0.25) benign(0.004) TCGA-FD-A3NA-01 19 20278080 20278080 C T ZNF486 5'Flank 0.29 TCGA-FD-A3NA-01 19 22271465 22271465 C T ZNF257 Nonsense_Mutation p.Q305* 0.21 TCGA-FD-A3NA-01 19 43236936 43236936 G A PSG3 Missense_Mutation p.P237S 0.33 tolerated(0.45) benign(0.006) TCGA-FD-A3NA-01 19 46509948 46509948 C G CCDC61 Missense_Mutation p.I121M 0.34 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 19 48945175 48945175 G A GRIN2D Missense_Mutation p.R801Q 0.06 tolerated(0.08) probably_damaging(0.996) TCGA-FD-A3NA-01 19 5135468 5135468 C G KDM4B Missense_Mutation p.S735C 0.23 benign(0) TCGA-FD-A3NA-01 19 5244216 5244216 G A PTPRS Silent p.G422G 0.19 TCGA-FD-A3NA-01 19 54972001 54972001 G A LENG8 Missense_Mutation p.E766K 0.22 tolerated(0.83) benign(0.123) TCGA-FD-A3NA-01 19 55828287 55828287 G A TMEM150B Silent p.F124F 0.29 TCGA-FD-A3NA-01 19 7671660 7671660 C T CAMSAP3 Intron 0.38 TCGA-FD-A3NA-01 19 9077046 9077046 C G MUC16 Missense_Mutation p.G3467A 0.18 unknown(0) TCGA-FD-A3NA-01 1 100756986 100756986 G C RTCA Missense_Mutation p.D356H 0.19 deleterious(0.01) possibly_damaging(0.668) TCGA-FD-A3NA-01 1 108023435 108023435 G A NTNG1 Silent p.L531L 0.29 TCGA-FD-A3NA-01 1 12640514 12640514 C T DHRS3 Intron 0.37 TCGA-FD-A3NA-01 1 1394564 1394564 G T ATAD3C Missense_Mutation p.R255S 0.19 deleterious(0) possibly_damaging(0.511) TCGA-FD-A3NA-01 1 152659675 152659675 G C LCE2B 3'UTR 0.29 TCGA-FD-A3NA-01 1 154995858 154995858 C A DCST2 Missense_Mutation p.G649V 0.38 deleterious(0.01) possibly_damaging(0.839) TCGA-FD-A3NA-01 1 155207361 155207361 T A GBA Missense_Mutation p.D257V 0.41 deleterious(0) possibly_damaging(0.657) TCGA-FD-A3NA-01 1 155449087 155449087 G A ASH1L Missense_Mutation p.H1192Y 0.38 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FD-A3NA-01 1 155449222 155449222 G A ASH1L Nonsense_Mutation p.Q1147* 0.23 TCGA-FD-A3NA-01 1 175066815 175066815 G A TNN Silent p.P617P 0.04 TCGA-FD-A3NA-01 1 177245417 177245417 G A BRINP2 Missense_Mutation p.E287K 0.25 deleterious(0.03) benign(0.265) TCGA-FD-A3NA-01 1 196794771 196794771 G C CFHR1 Missense_Mutation p.E75Q 0.31 tolerated(0.49) possibly_damaging(0.547) TCGA-FD-A3NA-01 1 201980232 201980232 T G ELF3 5'UTR 0.15 TCGA-FD-A3NA-01 1 206669563 206669563 G C IKBKE 3'UTR 0.50 TCGA-FD-A3NA-01 1 21329220 21329220 G A EIF4G3 Nonsense_Mutation p.Q6* 0.34 TCGA-FD-A3NA-01 1 236978926 236978926 A G MTR Missense_Mutation p.N211S 0.25 tolerated(0.18) benign(0.021) TCGA-FD-A3NA-01 1 244816569 244816569 C T DESI2 5'UTR 0.30 TCGA-FD-A3NA-01 1 33235330 33235330 C T KIAA1522 Missense_Mutation p.R215W 0.13 deleterious(0) unknown(0) TCGA-FD-A3NA-01 1 33236198 33236198 C G KIAA1522 Nonsense_Mutation p.S473* 0.09 TCGA-FD-A3NA-01 1 47283813 47283813 C G CYP4B1 Missense_Mutation p.S428C 0.12 deleterious(0) benign(0.046) TCGA-FD-A3NA-01 1 55521852 55521852 C T PCSK9 Missense_Mutation p.S329L 0.38 deleterious(0) probably_damaging(0.999) TCGA-FD-A3NA-01 1 68949729 68949729 C G DEPDC1 Missense_Mutation p.E272Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-FD-A3NA-01 1 74649182 74649182 T C LRRIQ3 Missense_Mutation p.T63A 0.49 deleterious(0.01) possibly_damaging(0.907) TCGA-FD-A3NA-01 20 259903 259903 G A C20orf96 Silent p.L125L 0.11 TCGA-FD-A3NA-01 20 34144111 34144111 C T ERGIC3 Intron 0.19 TCGA-FD-A3NA-01 20 37357147 37357147 C T SLC32A1 Silent p.L481L 0.06 TCGA-FD-A3NA-01 20 3898183 3898183 G A PANK2 Intron 0.27 TCGA-FD-A3NA-01 20 58545159 58545159 G A CDH26 Missense_Mutation p.R50Q 0.30 tolerated(0.48) benign(0.061) TCGA-FD-A3NA-01 21 33043774 33043774 C T SCAF4 Missense_Mutation p.E1128K 0.28 unknown(0) TCGA-FD-A3NA-01 21 41450881 41450881 C T DSCAM Missense_Mutation p.E1482K 0.31 deleterious(0.04) benign(0.297) TCGA-FD-A3NA-01 22 29957498 29957498 G C NIPSNAP1 Silent p.L192L 0.34 TCGA-FD-A3NA-01 22 30682066 30682066 C T GATSL3 Silent p.L255L 0.16 TCGA-FD-A3NA-01 22 32242914 32242914 C T DEPDC5 Missense_Mutation p.S1030L 0.15 deleterious(0) probably_damaging(0.917) TCGA-FD-A3NA-01 22 38234561 38234561 C T ANKRD54 Missense_Mutation p.D141N 0.27 tolerated(0.07) possibly_damaging(0.547) TCGA-FD-A3NA-01 22 50356727 50356727 C G PIM3 Silent p.L311L 0.23 TCGA-FD-A3NA-01 22 50714172 50714172 C G AL022328.1 Missense_Mutation p.L24V 0.14 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3NA-01 2 105858447 105858447 G A GPR45 Missense_Mutation p.M44I 0.26 tolerated(0.6) benign(0.001) TCGA-FD-A3NA-01 2 153483060 153483060 G C FMNL2 Missense_Mutation p.E662Q 0.31 possibly_damaging(0.607) TCGA-FD-A3NA-01 2 166165173 166165173 C G SCN2A Intron 0.28 TCGA-FD-A3NA-01 2 178402841 178402841 C G AGPS Missense_Mutation p.S632C 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-FD-A3NA-01 2 179436844 179436844 G T TTN Missense_Mutation p.T24672N 0.41 TCGA-FD-A3NA-01 2 190334854 190334854 C G WDR75 Missense_Mutation p.I624M 0.33 deleterious(0.03) benign(0.04) TCGA-FD-A3NA-01 2 197590756 197590756 C A CCDC150 Missense_Mutation p.A830D 0.27 deleterious(0) possibly_damaging(0.736) TCGA-FD-A3NA-01 2 205983760 205983760 A C PARD3B Missense_Mutation p.T266P 0.20 deleterious(0.01) probably_damaging(0.945) TCGA-FD-A3NA-01 2 209104705 209104705 C T IDH1 Missense_Mutation p.M291I 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A3NA-01 2 220309874 220309874 C G SPEG Missense_Mutation p.S269C 0.25 probably_damaging(0.998) TCGA-FD-A3NA-01 2 228194464 228194464 G A MFF Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.02) benign(0.047) TCGA-FD-A3NA-01 2 242572898 242572898 C T THAP4 Missense_Mutation p.G225E 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A3NA-01 2 24260579 24260579 G C C2orf44 Missense_Mutation p.Q596E 0.27 tolerated(0.15) benign(0.013) TCGA-FD-A3NA-01 2 54855387 54855387 G A SPTBN1 Missense_Mutation p.G600S 0.05 tolerated(0.1) benign(0.1) TCGA-FD-A3NA-01 2 55522809 55522809 C G CCDC88A Missense_Mutation p.L1824F 0.21 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-FD-A3NA-01 2 68692016 68692016 G C FBXO48 Missense_Mutation p.R88G 0.13 deleterious(0.01) benign(0.026) TCGA-FD-A3NA-01 3 10401790 10401790 G C ATP2B2 Silent p.G559G 0.37 TCGA-FD-A3NA-01 3 122123148 122123148 G A FAM162A Silent p.Q67Q 0.30 TCGA-FD-A3NA-01 3 126202223 126202223 C G UROC1 Missense_Mutation p.V687L 0.12 deleterious(0) probably_damaging(0.95) TCGA-FD-A3NA-01 3 128853792 128853792 G A ISY1 Missense_Mutation p.P164S 0.29 deleterious(0.04) benign(0.059) TCGA-FD-A3NA-01 3 130282320 130282320 G A COL6A6 Missense_Mutation p.G158E 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 3 135720804 135720804 C T PPP2R3A Missense_Mutation p.S155L 0.12 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-FD-A3NA-01 3 148596524 148596524 T C CPA3 Missense_Mutation p.Y155H 0.50 tolerated(0.09) probably_damaging(0.998) TCGA-FD-A3NA-01 3 151161338 151161338 C G IGSF10 Silent p.V1799V 0.33 TCGA-FD-A3NA-01 3 151166475 151166475 C G IGSF10 Missense_Mutation p.D432H 0.33 deleterious(0.03) possibly_damaging(0.833) TCGA-FD-A3NA-01 3 178928225 178928225 C G PIK3CA Missense_Mutation p.P471A 0.52 tolerated(0.06) possibly_damaging(0.511) TCGA-FD-A3NA-01 3 188933083 188933083 G A TPRG1 Silent p.P71P 0.52 TCGA-FD-A3NA-01 3 190026071 190026071 C G CLDN1 Missense_Mutation p.V211L 0.13 deleterious(0.03) unknown(0) TCGA-FD-A3NA-01 3 41961238 41961238 A G ULK4 Missense_Mutation p.L205S 0.26 deleterious(0) probably_damaging(0.955) TCGA-FD-A3NA-01 3 46497843 46497843 C T LTF Missense_Mutation p.E85K 0.24 tolerated(0.06) benign(0.204) TCGA-FD-A3NA-01 3 48465275 48465275 G A PLXNB1 Missense_Mutation p.S249F 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 3 50220147 50220147 C T SEMA3F Silent p.F278F 0.37 TCGA-FD-A3NA-01 3 64536627 64536627 G A ADAMTS9 Missense_Mutation p.R1604C 0.50 tolerated(0.18) possibly_damaging(0.67) TCGA-FD-A3NA-01 3 64599095 64599095 C T ADAMTS9 Missense_Mutation p.E1094K 0.13 tolerated(0.42) benign(0.005) TCGA-FD-A3NA-01 4 100527902 100527902 C T MTTP Intron 0.17 TCGA-FD-A3NA-01 4 104082321 104082321 C T CENPE Missense_Mutation p.D685N 0.24 probably_damaging(1) TCGA-FD-A3NA-01 4 104082409 104082409 C T CENPE Splice_Site p.X656_splice 0.18 TCGA-FD-A3NA-01 4 110415839 110415839 C T SEC24B Missense_Mutation p.P439S 0.26 tolerated(0.42) benign(0) TCGA-FD-A3NA-01 4 126238820 126238820 C T FAT4 Silent p.S418S 0.29 TCGA-FD-A3NA-01 4 126238826 126238826 C T FAT4 Silent p.I420I 0.28 TCGA-FD-A3NA-01 4 126239094 126239094 C G FAT4 Missense_Mutation p.L510V 0.26 possibly_damaging(0.68) TCGA-FD-A3NA-01 4 126239141 126239141 C G FAT4 Missense_Mutation p.I525M 0.27 probably_damaging(0.985) TCGA-FD-A3NA-01 4 126239282 126239282 C G FAT4 Silent p.L572L 0.29 TCGA-FD-A3NA-01 4 126239473 126239473 C T FAT4 Missense_Mutation p.P636L 0.37 benign(0.403) TCGA-FD-A3NA-01 4 126239494 126239494 C G FAT4 Missense_Mutation p.T643S 0.38 possibly_damaging(0.868) TCGA-FD-A3NA-01 4 126239578 126239578 C G FAT4 Nonsense_Mutation p.S671* 0.31 TCGA-FD-A3NA-01 4 126239780 126239780 C A FAT4 Silent p.V738V 0.25 TCGA-FD-A3NA-01 4 126240344 126240344 C A FAT4 Silent p.G926G 0.18 TCGA-FD-A3NA-01 4 126240492 126240492 C T FAT4 Missense_Mutation p.L976F 0.28 possibly_damaging(0.811) TCGA-FD-A3NA-01 4 126240499 126240499 C A FAT4 Missense_Mutation p.S978Y 0.28 probably_damaging(0.996) TCGA-FD-A3NA-01 4 126240563 126240563 C G FAT4 Silent p.L999L 0.28 TCGA-FD-A3NA-01 4 126240606 126240606 C G FAT4 Missense_Mutation p.R1014G 0.28 probably_damaging(0.911) TCGA-FD-A3NA-01 4 126240753 126240753 C G FAT4 Missense_Mutation p.Q1063E 0.36 possibly_damaging(0.507) TCGA-FD-A3NA-01 4 126240826 126240826 C G FAT4 Missense_Mutation p.T1087S 0.27 benign(0.1) TCGA-FD-A3NA-01 4 126241103 126241103 C G FAT4 Silent p.V1179V 0.35 TCGA-FD-A3NA-01 4 128722997 128722997 G C HSPA4L Missense_Mutation p.R196T 0.53 deleterious(0) probably_damaging(0.967) TCGA-FD-A3NA-01 4 155506692 155506692 C T FGA Missense_Mutation p.R630K 0.23 tolerated(0.46) benign(0.145) TCGA-FD-A3NA-01 4 183710449 183710449 C T TENM3 Silent p.T1836T 0.16 TCGA-FD-A3NA-01 4 187004048 187004048 C A TLR3 Nonsense_Mutation p.S403* 0.28 TCGA-FD-A3NA-01 4 40146258 40146258 C G N4BP2 Missense_Mutation p.L1661V 0.27 deleterious(0) possibly_damaging(0.872) TCGA-FD-A3NA-01 4 46930228 46930228 C T GABRA4 3'UTR 0.16 TCGA-FD-A3NA-01 4 79462137 79462137 G A FRAS1 Silent p.V3966V 0.05 TCGA-FD-A3NA-01 5 10390534 10390534 G C MARCH6 Missense_Mutation p.Q166H 0.22 deleterious(0) probably_damaging(0.993) TCGA-FD-A3NA-01 5 112917321 112917321 C A YTHDC2 Missense_Mutation p.P1188T 0.33 tolerated(0.2) benign(0.013) TCGA-FD-A3NA-01 5 115320284 115320284 G T AQPEP Missense_Mutation p.D286Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-FD-A3NA-01 5 133942733 133942733 C G SAR1B Silent p.L168L 0.27 TCGA-FD-A3NA-01 5 140476847 140476847 G T PCDHB2 3'UTR 0.24 TCGA-FD-A3NA-01 5 140572567 140572567 G A PCDHB10 Missense_Mutation p.E148K 0.38 deleterious_low_confidence(0.04) benign(0.009) TCGA-FD-A3NA-01 5 142680325 142680325 C T NR3C1 Missense_Mutation p.R492Q 0.27 deleterious(0.01) probably_damaging(0.919) TCGA-FD-A3NA-01 5 147821699 147821699 G A FBXO38 Missense_Mutation p.D1111N 0.11 tolerated(0.09) probably_damaging(0.996) TCGA-FD-A3NA-01 5 54593198 54593198 C A DHX29 Missense_Mutation p.R97I 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.626) TCGA-FD-A3NA-01 5 68805036 68805036 C G OCLN Missense_Mutation p.S40C 0.30 deleterious(0) probably_damaging(0.999) TCGA-FD-A3NA-01 5 81608660 81608660 T C ATP6AP1L Missense_Mutation p.I121T 0.21 tolerated(1) benign(0.012) TCGA-FD-A3NA-01 5 90670966 90670966 C G ARRDC3 Missense_Mutation p.E215Q 0.10 deleterious(0.01) possibly_damaging(0.826) TCGA-FD-A3NA-01 6 108984897 108984897 G A FOXO3 Silent p.Q287Q 0.42 TCGA-FD-A3NA-01 6 109308772 109308772 C G SESN1 Missense_Mutation p.R544T 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3NA-01 6 116442382 116442382 C T COL10A1 Silent p.G299G 0.19 TCGA-FD-A3NA-01 6 125621706 125621706 C T HDDC2 Missense_Mutation p.D62N 0.17 tolerated(0.06) benign(0.225) TCGA-FD-A3NA-01 6 159653433 159653433 C G FNDC1 Missense_Mutation p.S630C 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-FD-A3NA-01 6 170013745 170013745 G A WDR27 Missense_Mutation p.S744L 0.13 deleterious(0.02) benign(0.17) TCGA-FD-A3NA-01 6 35392554 35392554 G C PPARD Missense_Mutation p.G359A 0.39 tolerated(0.18) probably_damaging(1) TCGA-FD-A3NA-01 6 46657989 46657989 G A TDRD6 Silent p.Q708Q 0.40 TCGA-FD-A3NA-01 6 86194979 86194979 G A NT5E Missense_Mutation p.A260T 0.12 tolerated(0.18) benign(0.019) TCGA-FD-A3NA-01 7 100417263 100417263 C G EPHB4 Missense_Mutation p.E405Q 0.08 tolerated(0.15) possibly_damaging(0.849) TCGA-FD-A3NA-01 7 103202301 103202301 C T RELN Nonsense_Mutation p.W1770* 0.40 TCGA-FD-A3NA-01 7 112096991 112096991 C A IFRD1 Missense_Mutation p.L103I 0.06 deleterious(0) possibly_damaging(0.844) TCGA-FD-A3NA-01 7 128488646 128488646 G C FLNC Missense_Mutation p.D1538H 0.17 deleterious(0) probably_damaging(1) TCGA-FD-A3NA-01 7 148801424 148801424 G A ZNF425 Silent p.L513L 0.24 TCGA-FD-A3NA-01 7 151945127 151945127 G C KMT2C Missense_Mutation p.H798D 0.05 benign(0.171) TCGA-FD-A3NA-01 7 2749415 2749415 C A AMZ1 Missense_Mutation p.H305N 0.34 tolerated(0.28) possibly_damaging(0.694) TCGA-FD-A3NA-01 7 30094402 30094402 G A PLEKHA8 Missense_Mutation p.D292N 0.22 tolerated(0.47) benign(0) TCGA-FD-A3NA-01 7 45015119 45015119 C T MYO1G Silent p.P176P 0.39 TCGA-FD-A3NA-01 8 104897909 104897909 G A RIMS2 Missense_Mutation p.R361Q 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A3NA-01 8 113241090 113241090 G T CSMD3 Nonsense_Mutation p.S3620* 0.47 TCGA-FD-A3NA-01 8 120620215 120620215 T C ENPP2 Silent p.L260L 0.52 TCGA-FD-A3NA-01 8 144803789 144803789 G T MAPK15 Silent p.G425G 0.49 TCGA-FD-A3NA-01 8 42183487 42183487 G C IKBKB Splice_Site p.X663_splice 0.21 TCGA-FD-A3NA-01 8 86050700 86050700 G C LRRCC1 Missense_Mutation p.E944Q 0.39 tolerated(0.65) benign(0.041) TCGA-FD-A3NA-01 8 96166849 96166849 C T PLEKHF2 Missense_Mutation p.L193F 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-FD-A3NA-01 9 4574009 4574009 G C SLC1A1 Silent p.L290L 0.45 TCGA-FD-A3NA-01 X 101572262 101572262 G A NXF2 Intron 0.26 TCGA-FD-A3NA-01 X 123185061 123185061 C T STAG2 Missense_Mutation p.R370W 0.36 deleterious(0) probably_damaging(0.963) TCGA-FD-A3NA-01 X 153640483 153640483 G A TAZ Missense_Mutation p.R57Q 0.62 deleterious(0) probably_damaging(0.985) TCGA-FD-A3NA-01 X 47045491 47045491 G A RBM10 Missense_Mutation p.E820K 0.46 deleterious(0.02) benign(0.112) TCGA-FD-A3NA-01 X 49071570 49071570 G C CACNA1F Silent p.L1202L 0.53 TCGA-FD-A3SJ-01 10 103649229 103649229 A G C10orf76 Silent p.F600F 0.22 TCGA-FD-A3SJ-01 10 104174879 104174879 C T PSD Missense_Mutation p.D289N 0.15 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SJ-01 10 116732026 116732026 C T TRUB1 Silent p.F243F 0.36 TCGA-FD-A3SJ-01 10 118306905 118306905 A G PNLIP Missense_Mutation p.K49R 0.13 deleterious(0.01) benign(0.006) TCGA-FD-A3SJ-01 10 122626260 122626260 C A WDR11 Silent p.R392R 0.35 TCGA-FD-A3SJ-01 10 124708192 124708192 C T C10orf88 Silent p.L207L 0.19 TCGA-FD-A3SJ-01 10 131565235 131565235 G T MGMT Missense_Mutation p.G231C 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-FD-A3SJ-01 10 16990556 16990556 G A CUBN Silent p.S1710S 0.34 TCGA-FD-A3SJ-01 10 42832385 42832385 C G RP11-313J2.1 RNA 0.29 TCGA-FD-A3SJ-01 10 43088096 43088096 G A ZNF33B Nonsense_Mutation p.Q768* 0.12 TCGA-FD-A3SJ-01 10 53457995 53457995 C G CSTF2T Missense_Mutation p.E439Q 0.22 deleterious_low_confidence(0.02) benign(0.257) TCGA-FD-A3SJ-01 10 61028376 61028376 G A FAM13C Silent p.I293I 0.31 TCGA-FD-A3SJ-01 10 70048284 70048284 C G PBLD Missense_Mutation p.R216T 0.23 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SJ-01 10 81063832 81063832 A C ZMIZ1 Missense_Mutation p.D729A 0.22 possibly_damaging(0.735) TCGA-FD-A3SJ-01 10 85973956 85973956 C G CDHR1 Missense_Mutation p.S720C 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A3SJ-01 10 91099693 91099693 G A IFIT3 Silent p.Q427Q 0.12 TCGA-FD-A3SJ-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.55 TCGA-FD-A3SJ-01 11 101347251 101347251 C T TRPC6 Missense_Mutation p.E509K 0.47 deleterious(0) benign(0.258) TCGA-FD-A3SJ-01 11 104776315 104776315 C T RP11-693N9.2 Intron 0.48 TCGA-FD-A3SJ-01 11 117063363 117063363 C T SIDT2 Silent p.Y685Y 0.31 TCGA-FD-A3SJ-01 11 118352808 118352808 G A KMT2A Splice_Site p.X1338_splice 0.42 TCGA-FD-A3SJ-01 11 12231097 12231097 G C MICAL2 Missense_Mutation p.E215Q 0.45 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SJ-01 11 124440753 124440753 C T OR8A1 Silent p.A263A 0.48 TCGA-FD-A3SJ-01 11 126081382 126081382 C T RPUSD4 Missense_Mutation p.R51Q 0.44 tolerated(0.1) possibly_damaging(0.899) TCGA-FD-A3SJ-01 11 27405924 27405924 C G LGR4 Silent p.L216L 0.41 TCGA-FD-A3SJ-01 11 30032651 30032651 C G KCNA4 Silent p.V525V 0.25 TCGA-FD-A3SJ-01 11 36512195 36512195 C T TRAF6 Silent p.Q254Q 0.33 TCGA-FD-A3SJ-01 11 4623543 4623543 C T TRIM68 Missense_Mutation p.E208K 0.40 deleterious(0) possibly_damaging(0.78) TCGA-FD-A3SJ-01 11 4944672 4944672 G T OR51G1 Missense_Mutation p.Q300K 0.26 deleterious(0.03) possibly_damaging(0.9) TCGA-FD-A3SJ-01 11 5475260 5475261 - C OR51I2 Frame_Shift_Ins p.D183Rfs*9 0.32 TCGA-FD-A3SJ-01 11 55587908 55587908 C G OR5D18 Missense_Mutation p.S268C 0.34 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SJ-01 11 55735793 55735793 G A OR10AG1 Silent p.P49P 0.47 TCGA-FD-A3SJ-01 11 57069342 57069342 G A TNKS1BP1 Missense_Mutation p.S1637L 0.06 deleterious(0) probably_damaging(0.946) TCGA-FD-A3SJ-01 11 57087992 57087992 G - TNKS1BP1 Frame_Shift_Del p.L97Ffs*34 0.17 TCGA-FD-A3SJ-01 11 57147185 57147185 T A PRG3 Missense_Mutation p.T53S 0.25 tolerated(0.37) benign(0.018) TCGA-FD-A3SJ-01 11 57995510 57995510 C T OR10Q1 Missense_Mutation p.A280T 0.16 deleterious(0) probably_damaging(0.974) TCGA-FD-A3SJ-01 11 59807984 59807984 G A OOSP2 Missense_Mutation p.E18K 0.28 tolerated(0.68) benign(0.021) TCGA-FD-A3SJ-01 11 60695278 60695278 C T TMEM132A Missense_Mutation p.R161W 0.36 deleterious(0.04) benign(0.013) TCGA-FD-A3SJ-01 11 6340487 6340487 G T PRKCDBP Missense_Mutation p.T231K 0.33 tolerated_low_confidence(1) benign(0) TCGA-FD-A3SJ-01 11 65265452 65265452 A G MALAT1 RNA 0.43 TCGA-FD-A3SJ-01 11 66190264 66190264 G T NPAS4 Nonsense_Mutation p.G184* 0.20 TCGA-FD-A3SJ-01 11 66191516 66191516 T C NPAS4 Silent p.S385S 0.13 TCGA-FD-A3SJ-01 11 67222934 67222934 C G CABP4 Missense_Mutation p.L14V 0.50 tolerated_low_confidence(0.16) benign(0.028) TCGA-FD-A3SJ-01 11 67766749 67766749 G C UNC93B1 Missense_Mutation p.S194C 0.47 tolerated(0.05) possibly_damaging(0.478) TCGA-FD-A3SJ-01 11 68331787 68331788 - A PPP6R3 Frame_Shift_Ins p.I289Dfs*30 0.25 TCGA-FD-A3SJ-01 11 73066945 73066945 G A ARHGEF17 Missense_Mutation p.D1204N 0.23 tolerated(0.1) probably_damaging(0.995) TCGA-FD-A3SJ-01 11 73067780 73067780 G A ARHGEF17 Silent p.L1289L 0.18 TCGA-FD-A3SJ-01 11 75852128 75852128 G A UVRAG Missense_Mutation p.G591R 0.24 tolerated_low_confidence(0.38) benign(0.006) TCGA-FD-A3SJ-01 11 85977208 85977208 G C EED Missense_Mutation p.M270I 0.13 tolerated(1) benign(0.001) TCGA-FD-A3SJ-01 11 85977209 85977209 A T EED Missense_Mutation p.M271L 0.13 tolerated(0.24) benign(0) TCGA-FD-A3SJ-01 11 88027062 88027062 G A CTSC 3'UTR 0.54 TCGA-FD-A3SJ-01 12 106712230 106712230 A G TCP11L2 Silent p.E134E 0.24 TCGA-FD-A3SJ-01 12 109654448 109654448 A G ACACB Missense_Mutation p.M1126V 0.23 tolerated(0.06) benign(0.217) TCGA-FD-A3SJ-01 12 113554886 113554886 C T RASAL1 Silent p.E241E 0.19 TCGA-FD-A3SJ-01 12 114823367 114823367 C T TBX5 Silent p.T223T 0.17 TCGA-FD-A3SJ-01 12 124352470 124352470 G T DNAH10 Missense_Mutation p.M2323I 0.44 benign(0.005) TCGA-FD-A3SJ-01 12 124798930 124798930 C G FAM101A Missense_Mutation p.I89M 0.41 deleterious(0) probably_damaging(0.973) TCGA-FD-A3SJ-01 12 130184385 130184385 C G TMEM132D Missense_Mutation p.R313T 0.15 tolerated(0.51) benign(0.005) TCGA-FD-A3SJ-01 12 14589126 14589126 G A ATF7IP Missense_Mutation p.E578K 0.39 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-FD-A3SJ-01 12 20890060 20890060 C A SLCO1C1 Missense_Mutation p.H468N 0.12 tolerated(0.42) benign(0.005) TCGA-FD-A3SJ-01 12 21229431 21229431 C T SLCO1B7 Missense_Mutation p.T551M 0.24 deleterious(0) probably_damaging(0.99) TCGA-FD-A3SJ-01 12 22646159 22646159 G C C2CD5 Missense_Mutation p.I420M 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SJ-01 12 27787986 27787986 T A PPFIBP1 Missense_Mutation p.L70M 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A3SJ-01 12 41421762 41421762 G T CNTN1 Silent p.T938T 0.29 TCGA-FD-A3SJ-01 12 46244661 46244661 C G ARID2 Missense_Mutation p.Q919E 0.12 tolerated_low_confidence(0.21) benign(0.051) TCGA-FD-A3SJ-01 12 49087819 49087819 C A CCNT1 Missense_Mutation p.R393L 0.16 deleterious(0) probably_damaging(0.975) TCGA-FD-A3SJ-01 12 52910468 52910468 G A KRT5 Silent p.D464D 0.21 TCGA-FD-A3SJ-01 12 56477672 56477672 C T ERBB3 Missense_Mutation p.L74F 0.26 tolerated(0.6) benign(0.139) TCGA-FD-A3SJ-01 12 57548325 57548325 G T LRP1 Missense_Mutation p.Q356H 0.26 benign(0.015) TCGA-FD-A3SJ-01 12 58158842 58158842 C A CYP27B1 Missense_Mutation p.G248W 0.19 tolerated(0.19) probably_damaging(0.999) TCGA-FD-A3SJ-01 12 67706712 67706712 A G CAND1 3'UTR 0.33 TCGA-FD-A3SJ-01 12 80626769 80626769 G A OTOGL Missense_Mutation p.G228R 0.36 deleterious(0) probably_damaging(1) TCGA-FD-A3SJ-01 12 80658990 80658990 G T OTOGL Missense_Mutation p.A733S 0.39 deleterious(0.02) benign(0.234) TCGA-FD-A3SJ-01 12 85266933 85266933 C A SLC6A15 Missense_Mutation p.A348S 0.12 deleterious(0.02) probably_damaging(0.985) TCGA-FD-A3SJ-01 12 86199049 86199049 G T RASSF9 Missense_Mutation p.L247I 0.19 tolerated(0.19) benign(0.003) TCGA-FD-A3SJ-01 12 86272172 86272172 G T NTS Missense_Mutation p.C62F 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SJ-01 13 101707622 101707622 G T NALCN 3'UTR 0.22 TCGA-FD-A3SJ-01 13 101707623 101707623 A T NALCN 3'UTR 0.22 TCGA-FD-A3SJ-01 13 109817341 109817341 G A MYO16 Missense_Mutation p.G1731R 0.06 deleterious_low_confidence(0) benign(0.03) TCGA-FD-A3SJ-01 13 115037904 115037904 G C CDC16 Missense_Mutation p.D617H 0.68 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-FD-A3SJ-01 13 33018121 33018121 C G N4BP2L2 Missense_Mutation p.D185H 0.31 deleterious(0.02) probably_damaging(0.948) TCGA-FD-A3SJ-01 13 41766515 41766515 G A KBTBD7 Nonsense_Mutation p.Q627* 0.30 TCGA-FD-A3SJ-01 13 99337111 99337111 A G SLC15A1 Missense_Mutation p.I665T 0.12 deleterious(0) benign(0.126) TCGA-FD-A3SJ-01 14 105222038 105222038 G A SIVA1 Missense_Mutation p.V64I 0.17 tolerated(0.86) benign(0.003) TCGA-FD-A3SJ-01 14 20586060 20586060 C T OR4K17 Silent p.T165T 0.10 TCGA-FD-A3SJ-01 14 20711554 20711554 G T OR11H4 Missense_Mutation p.A202S 0.40 tolerated(0.08) benign(0.219) TCGA-FD-A3SJ-01 14 23947286 23947286 T G NGDN 3'UTR 0.22 TCGA-FD-A3SJ-01 14 66136117 66136117 A G FUT8 Missense_Mutation p.T252A 0.17 tolerated(0.24) benign(0.007) TCGA-FD-A3SJ-01 15 101938656 101938656 C A PCSK6 Missense_Mutation p.G316W 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A3SJ-01 15 22368693 22368693 C A OR4M2 Missense_Mutation p.P40T 0.10 tolerated(0.29) benign(0.334) TCGA-FD-A3SJ-01 15 24921968 24921968 C G NPAP1 Silent p.P318P 0.11 TCGA-FD-A3SJ-01 15 42113042 42113042 G A MAPKBP1 Missense_Mutation p.V838M 0.32 tolerated(0.16) benign(0.004) TCGA-FD-A3SJ-01 15 76995205 76995205 G C SCAPER Missense_Mutation p.L796V 0.19 tolerated(0.19) probably_damaging(0.999) TCGA-FD-A3SJ-01 15 85382285 85382285 G A ALPK3 Missense_Mutation p.E329K 0.52 tolerated(0.05) benign(0.361) TCGA-FD-A3SJ-01 15 93563489 93563489 G A CHD2 Splice_Site p.X1718_splice 0.39 TCGA-FD-A3SJ-01 16 1129228 1129228 C T SSTR5 Silent p.G120G 0.09 TCGA-FD-A3SJ-01 16 11850213 11850213 C T ZC3H7A Silent p.E814E 0.27 TCGA-FD-A3SJ-01 16 16346306 16346306 G T NOMO3 Missense_Mutation p.G297V 0.33 deleterious(0) probably_damaging(0.989) TCGA-FD-A3SJ-01 16 1996698 1996698 C T RPL3L Missense_Mutation p.M293I 0.23 tolerated(1) benign(0) TCGA-FD-A3SJ-01 16 21211121 21211121 C T ZP2 Silent p.Q591Q 0.37 TCGA-FD-A3SJ-01 16 31105701 31105701 C G VKORC1 Intron 0.36 TCGA-FD-A3SJ-01 16 3298929 3298929 C G MEFV Missense_Mutation p.E446Q 0.12 tolerated(0.2) benign(0.058) TCGA-FD-A3SJ-01 16 48399335 48399336 - A SIAH1 Frame_Shift_Ins p.T19Hfs*47 0.25 TCGA-FD-A3SJ-01 16 68021779 68021779 C T DPEP2 Silent p.L394L 0.13 TCGA-FD-A3SJ-01 16 68248244 68248244 C T NFATC3 Intron 0.11 TCGA-FD-A3SJ-01 17 10216603 10216603 A T MYH13 Nonsense_Mutation p.Y1351* 0.19 TCGA-FD-A3SJ-01 17 33520951 33520951 G A SLC35G3 Missense_Mutation p.P126S 0.37 tolerated(0.24) benign(0.303) TCGA-FD-A3SJ-01 17 34864917 34864917 C A MYO19 Silent p.S405S 0.43 TCGA-FD-A3SJ-01 17 42476849 42476849 A T GPATCH8 Missense_Mutation p.S866T 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-FD-A3SJ-01 17 73016618 73016618 C G ICT1 Missense_Mutation p.I134M 0.14 deleterious(0) possibly_damaging(0.857) TCGA-FD-A3SJ-01 17 73738530 73738530 C G ITGB4 Silent p.L914L 0.36 TCGA-FD-A3SJ-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.37 deleterious(0) probably_damaging(1) TCGA-FD-A3SJ-01 17 78082619 78082619 A G GAA Missense_Mutation p.M440V 0.42 tolerated(0.06) benign(0.088) TCGA-FD-A3SJ-01 17 78321834 78321834 C T RNF213 Silent p.V3233V 0.26 TCGA-FD-A3SJ-01 17 78519560 78519560 C G RPTOR Missense_Mutation p.S44C 0.18 tolerated(0.24) benign(0.003) TCGA-FD-A3SJ-01 18 14851705 14851705 A T ANKRD30B Missense_Mutation p.K1135N 0.41 deleterious(0) benign(0.277) TCGA-FD-A3SJ-01 18 23854694 23854694 T A TAF4B Missense_Mutation p.L222Q 0.13 tolerated(0.13) possibly_damaging(0.677) TCGA-FD-A3SJ-01 18 40851713 40851713 G C SYT4 Missense_Mutation p.R312G 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A3SJ-01 19 10798322 10798322 C T ILF3 Missense_Mutation p.S791L 0.58 tolerated(0.66) unknown(0) TCGA-FD-A3SJ-01 19 17426805 17426805 G T DDA1 Splice_Site p.X66_splice 0.16 TCGA-FD-A3SJ-01 19 18497017 18497017 C T GDF15 Silent p.L6L 0.11 TCGA-FD-A3SJ-01 19 20308312 20308312 C A ZNF486 Missense_Mutation p.P265T 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-FD-A3SJ-01 19 20308324 20308324 G A ZNF486 Missense_Mutation p.E269K 0.16 tolerated(0.09) probably_damaging(0.992) TCGA-FD-A3SJ-01 19 23927544 23927544 T C ZNF681 Missense_Mutation p.T270A 0.25 tolerated(0.11) benign(0.217) TCGA-FD-A3SJ-01 19 30934813 30934813 C A ZNF536 Missense_Mutation p.S115Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SJ-01 19 36278140 36278140 G A ARHGAP33 Silent p.P730P 0.69 TCGA-FD-A3SJ-01 19 41447325 41447325 A G AC092071.1 5'Flank 0.12 TCGA-FD-A3SJ-01 19 43579628 43579628 G C PSG2 Missense_Mutation p.S196C 0.13 deleterious(0.01) probably_damaging(0.972) TCGA-FD-A3SJ-01 19 44097062 44097062 G A IRGQ Missense_Mutation p.R330C 0.05 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SJ-01 19 44531625 44531625 A T ZNF222 Missense_Mutation p.Q82L 0.65 deleterious(0.04) benign(0.029) TCGA-FD-A3SJ-01 19 44933335 44933335 C T ZNF229 Missense_Mutation p.G541R 0.62 deleterious(0.04) probably_damaging(1) TCGA-FD-A3SJ-01 19 48342712 48342712 G A CRX Missense_Mutation p.D130N 0.30 tolerated(0.34) possibly_damaging(0.468) TCGA-FD-A3SJ-01 19 49206253 49206253 C A FUT2 Missense_Mutation p.H14N 0.24 tolerated_low_confidence(0.11) benign(0.003) TCGA-FD-A3SJ-01 19 49643235 49643235 C T PPFIA3 Missense_Mutation p.S753F 0.38 deleterious(0) possibly_damaging(0.828) TCGA-FD-A3SJ-01 19 49842800 49842800 C T CD37 Intron 0.29 TCGA-FD-A3SJ-01 19 52196182 52196182 A G SPACA6P-AS RNA 0.42 TCGA-FD-A3SJ-01 19 52220265 52220265 C T HAS1 Missense_Mutation p.C295Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SJ-01 19 53576532 53576532 G A ZNF160 Intron 0.21 TCGA-FD-A3SJ-01 19 57764890 57764890 G A ZNF805 Missense_Mutation p.E235K 0.14 deleterious(0.02) benign(0.424) TCGA-FD-A3SJ-01 19 57908460 57908460 G T ZNF548 Missense_Mutation p.E32D 0.36 deleterious(0.03) benign(0.058) TCGA-FD-A3SJ-01 19 58491154 58491154 G A ZNF606 Silent p.F298F 0.29 TCGA-FD-A3SJ-01 19 58862857 58862857 G A A1BG Silent p.A270A 0.13 TCGA-FD-A3SJ-01 19 6679429 6679429 C T C3 Missense_Mutation p.R1512H 0.33 deleterious(0.05) benign(0.102) TCGA-FD-A3SJ-01 19 9090928 9090928 G A MUC16 Missense_Mutation p.S296L 0.48 unknown(0) TCGA-FD-A3SJ-01 19 9272093 9272093 G - ZNF317 Frame_Shift_Del p.W591* 0.31 TCGA-FD-A3SJ-01 1 110882503 110882503 C G RBM15 Nonsense_Mutation p.S159* 0.38 TCGA-FD-A3SJ-01 1 111957832 111957832 C A OVGP1 Missense_Mutation p.G431W 0.17 tolerated(0.16) benign(0.379) TCGA-FD-A3SJ-01 1 149859361 149859361 G C HIST2H2AB Missense_Mutation p.R36G 0.17 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-FD-A3SJ-01 1 151491799 151491799 G A CGN Silent p.Q268Q 0.30 TCGA-FD-A3SJ-01 1 152080319 152080319 C G TCHH Missense_Mutation p.E1792Q 0.25 unknown(0) TCGA-FD-A3SJ-01 1 152080442 152080442 C G TCHH Missense_Mutation p.E1751Q 0.24 unknown(0) TCGA-FD-A3SJ-01 1 154471660 154471660 G A SHE Nonsense_Mutation p.Q216* 0.29 TCGA-FD-A3SJ-01 1 157650526 157650526 C T FCRL3 Silent p.Q664Q 0.39 TCGA-FD-A3SJ-01 1 160808273 160808273 C G CD244 Missense_Mutation p.D273H 0.64 deleterious(0.02) benign(0.159) TCGA-FD-A3SJ-01 1 161094073 161094073 G A DEDD Silent p.L60L 0.68 TCGA-FD-A3SJ-01 1 161193191 161193191 T C APOA2 Translation_Start_Site p.M1? 0.16 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SJ-01 1 164769086 164769086 G A PBX1 Missense_Mutation p.E221K 0.06 deleterious(0) possibly_damaging(0.832) TCGA-FD-A3SJ-01 1 173174495 173174495 A T TNFSF4 Intron 0.06 TCGA-FD-A3SJ-01 1 176564283 176564283 G T PAPPA2 Nonsense_Mutation p.G515* 0.10 TCGA-FD-A3SJ-01 1 176659424 176659424 A G PAPPA2 Silent p.P763P 0.05 TCGA-FD-A3SJ-01 1 197160945 197160945 G C ZBTB41 Missense_Mutation p.S402C 0.26 deleterious(0.01) probably_damaging(0.94) TCGA-FD-A3SJ-01 1 202702685 202702685 T A KDM5B Silent p.A1251A 0.17 TCGA-FD-A3SJ-01 1 222843192 222843192 G C AIDA 3'UTR 0.33 TCGA-FD-A3SJ-01 1 24124667 24124667 C T GALE Silent p.S97S 0.05 TCGA-FD-A3SJ-01 1 26140386 26140386 C T SEPN1 Missense_Mutation p.L468F 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-FD-A3SJ-01 1 28208582 28208582 G A THEMIS2 Silent p.L249L 0.25 TCGA-FD-A3SJ-01 1 3160668 3160668 G - PRDM16 Frame_Shift_Del p.E136Kfs*75 0.19 TCGA-FD-A3SJ-01 1 35580244 35580244 G C ZMYM1 Missense_Mutation p.R938T 0.07 deleterious(0) possibly_damaging(0.735) TCGA-FD-A3SJ-01 1 41282936 41282936 G C KCNQ4 Splice_Site p.X105_splice 0.12 TCGA-FD-A3SJ-01 1 43395392 43395392 C T SLC2A1 Missense_Mutation p.E247K 0.33 deleterious(0.02) probably_damaging(0.955) TCGA-FD-A3SJ-01 1 43395395 43395395 C T SLC2A1 Missense_Mutation p.E246K 0.34 tolerated(0.61) possibly_damaging(0.622) TCGA-FD-A3SJ-01 1 45966020 45966020 G T MMACHC Missense_Mutation p.A6S 0.11 tolerated(0.19) benign(0.023) TCGA-FD-A3SJ-01 1 48701486 48701486 C T SLC5A9 Silent p.F434F 0.40 TCGA-FD-A3SJ-01 1 52861995 52861995 C T ORC1 Silent p.L148L 0.44 TCGA-FD-A3SJ-01 1 6100617 6100617 G A AL035406.1 3'Flank 0.29 TCGA-FD-A3SJ-01 1 6156774 6156774 A G KCNAB2 Missense_Mutation p.I343V 0.42 tolerated(0.18) benign(0.017) TCGA-FD-A3SJ-01 1 6529488 6529488 C T PLEKHG5 Silent p.L731L 0.21 TCGA-FD-A3SJ-01 1 66083712 66083712 C G LEPR Missense_Mutation p.L760V 0.19 deleterious(0.03) benign(0.128) TCGA-FD-A3SJ-01 1 77516012 77516012 G C ST6GALNAC5 Missense_Mutation p.R247S 0.32 probably_damaging(0.99) TCGA-FD-A3SJ-01 1 77629564 77629564 G A PIGK Missense_Mutation p.A184V 0.27 deleterious(0) probably_damaging(0.955) TCGA-FD-A3SJ-01 1 8385897 8385897 G T SLC45A1 Silent p.S170S 0.18 TCGA-FD-A3SJ-01 20 33147573 33147573 C T MAP1LC3A Silent p.F83F 0.25 TCGA-FD-A3SJ-01 20 34022096 34022096 G A GDF5OS Missense_Mutation p.R47K 0.32 tolerated_low_confidence(0.44) benign(0.146) TCGA-FD-A3SJ-01 20 35547851 35547851 T C SAMHD1 Silent p.Q256Q 0.24 TCGA-FD-A3SJ-01 20 43560969 43560969 C G PABPC1L Intron 0.28 TCGA-FD-A3SJ-01 20 48522186 48522189 GGAC AG SPATA2 Frame_Shift_Del p.K510Nfs*32 0.13 TCGA-FD-A3SJ-01 20 50139915 50139915 C T NFATC2 Missense_Mutation p.G289S 0.21 tolerated(0.82) benign(0.001) TCGA-FD-A3SJ-01 21 27130395 27130395 A G GABPA Missense_Mutation p.I210V 0.13 tolerated(0.65) benign(0.001) TCGA-FD-A3SJ-01 21 31587705 31587705 G T CLDN8 Missense_Mutation p.A180D 0.06 deleterious(0.01) benign(0.424) TCGA-FD-A3SJ-01 21 43161747 43161747 C T RIPK4 Missense_Mutation p.E536K 0.25 deleterious(0.03) benign(0.263) TCGA-FD-A3SJ-01 21 43836631 43836631 G C UBASH3A Missense_Mutation p.E250Q 0.42 deleterious(0) possibly_damaging(0.821) TCGA-FD-A3SJ-01 21 45746744 45746744 G A PFKL Silent p.%3D 0.56 TCGA-FD-A3SJ-01 21 45811248 45811248 G A TRPM2 Missense_Mutation p.E512K 0.34 tolerated(0.08) benign(0.05) TCGA-FD-A3SJ-01 22 16287675 16287675 A G POTEH Missense_Mutation p.W71R 0.25 deleterious_low_confidence(0.05) benign(0.155) TCGA-FD-A3SJ-01 22 19423455 19423455 G C MRPL40 Missense_Mutation p.K197N 0.17 deleterious(0) probably_damaging(0.989) TCGA-FD-A3SJ-01 22 31010392 31010392 C G TCN2 Missense_Mutation p.L162V 0.54 deleterious(0.03) possibly_damaging(0.486) TCGA-FD-A3SJ-01 22 31884623 31884623 G - EIF4ENIF1 Frame_Shift_Del p.H28Ifs*11 0.41 TCGA-FD-A3SJ-01 22 37098579 37098579 C T CACNG2 Missense_Mutation p.V15I 0.48 deleterious(0.05) probably_damaging(0.989) TCGA-FD-A3SJ-01 22 41077323 41077323 C T MCHR1 Silent p.S220S 0.33 TCGA-FD-A3SJ-01 2 121744054 121744054 G A GLI2 Silent p.L719L 0.22 TCGA-FD-A3SJ-01 2 128036775 128036775 T C ERCC3 Silent p.L568L 0.42 TCGA-FD-A3SJ-01 2 128408390 128408390 G A GPR17 Silent p.T55T 0.20 TCGA-FD-A3SJ-01 2 152487762 152487762 C T NEB Silent p.L3171L 0.53 TCGA-FD-A3SJ-01 2 179448568 179448568 G C TTN Missense_Mutation p.P21781A 0.38 TCGA-FD-A3SJ-01 2 20189789 20189789 G T WDR35 5'UTR 0.21 TCGA-FD-A3SJ-01 2 216237060 216237060 G C FN1 Missense_Mutation p.L2096V 0.53 tolerated(0.53) benign(0.109) TCGA-FD-A3SJ-01 2 220326632 220326632 C G SPEG Silent p.P823P 0.44 TCGA-FD-A3SJ-01 2 231738161 231738161 G C ITM2C Missense_Mutation p.K50N 0.18 tolerated(0.32) benign(0.002) TCGA-FD-A3SJ-01 2 238303321 238303321 A C COL6A3 Silent p.L206L 0.21 TCGA-FD-A3SJ-01 2 27608625 27608625 T A PPM1G Missense_Mutation p.D133V 0.33 tolerated(0.06) possibly_damaging(0.804) TCGA-FD-A3SJ-01 2 27876591 27876591 G C SUPT7L Missense_Mutation p.L336V 0.30 deleterious(0.03) possibly_damaging(0.631) TCGA-FD-A3SJ-01 2 31591514 31591514 C T XDH Missense_Mutation p.G665R 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3SJ-01 2 44528286 44528286 C T SLC3A1 Intron 0.27 TCGA-FD-A3SJ-01 2 55479634 55479634 G C MTIF2 Missense_Mutation p.Q274E 0.28 tolerated(0.26) benign(0.024) TCGA-FD-A3SJ-01 2 68408096 68408096 C G PPP3R1 Nonstop_Mutation p.*171Sext*17 0.17 TCGA-FD-A3SJ-01 2 70164512 70164512 C G MXD1 Missense_Mutation p.S155C 0.31 deleterious(0) probably_damaging(0.984) TCGA-FD-A3SJ-01 2 90139389 90139389 T C IGKV1D-16 Missense_Mutation p.W54R 0.24 tolerated(0.19) benign(0.002) TCGA-FD-A3SJ-01 2 98340656 98340656 G C ZAP70 Missense_Mutation p.D53H 0.54 deleterious(0.04) possibly_damaging(0.555) TCGA-FD-A3SJ-01 2 99294780 99294780 C G MGAT4A Missense_Mutation p.L83F 0.13 tolerated(0.65) benign(0.004) TCGA-FD-A3SJ-01 2 99294910 99294910 T A MGAT4A Missense_Mutation p.E40V 0.18 deleterious(0) benign(0.342) TCGA-FD-A3SJ-01 2 99294911 99294911 C T MGAT4A Missense_Mutation p.E40K 0.17 deleterious(0.01) benign(0.184) TCGA-FD-A3SJ-01 3 100992518 100992518 G A IMPG2 Silent p.F245F 0.29 TCGA-FD-A3SJ-01 3 128182176 128182176 C T DNAJB8 5'UTR 0.11 TCGA-FD-A3SJ-01 3 128979195 128979195 C T COPG1 Silent p.S297S 0.18 TCGA-FD-A3SJ-01 3 133698434 133698434 T A SLCO2A1 Missense_Mutation p.Q42L 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A3SJ-01 3 136192446 136192446 G C STAG1 Missense_Mutation p.L354V 0.31 deleterious(0) probably_damaging(0.927) TCGA-FD-A3SJ-01 3 145790403 145790403 T A PLOD2 Missense_Mutation p.D598V 0.23 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SJ-01 3 147128322 147128322 C G ZIC1 Silent p.L141L 0.14 TCGA-FD-A3SJ-01 3 170858210 170858210 C T TNIK Missense_Mutation p.R437K 0.32 tolerated(0.22) unknown(0) TCGA-FD-A3SJ-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.42 tolerated(0.44) benign(0.085) TCGA-FD-A3SJ-01 3 33626305 33626305 T C CLASP2 Missense_Mutation p.R727G 0.43 deleterious(0.03) probably_damaging(0.992) TCGA-FD-A3SJ-01 3 38743492 38743492 C G SCN10A Missense_Mutation p.D1499H 0.26 deleterious(0) benign(0.229) TCGA-FD-A3SJ-01 3 38743576 38743576 C G SCN10A Missense_Mutation p.D1471H 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-FD-A3SJ-01 3 38743601 38743601 C G SCN10A Splice_Site p.X1463_splice 0.20 TCGA-FD-A3SJ-01 3 42678832 42678832 C G NKTR Missense_Mutation p.R546G 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-FD-A3SJ-01 3 51895685 51895685 G C IQCF2 Translation_Start_Site p.M1? 0.41 deleterious(0.04) probably_damaging(0.98) TCGA-FD-A3SJ-01 3 58088057 58088057 G A FLNB Missense_Mutation p.M491I 0.41 tolerated(0.4) benign(0) TCGA-FD-A3SJ-01 4 173150860 173150860 G C GALNTL6 Missense_Mutation p.L64F 0.22 tolerated(0.72) benign(0.434) TCGA-FD-A3SJ-01 4 3446124 3446124 G C HGFAC Missense_Mutation p.E229Q 0.33 tolerated(0.62) benign(0.037) TCGA-FD-A3SJ-01 4 37687844 37687844 C T RELL1 Silent p.V22V 0.31 TCGA-FD-A3SJ-01 4 57221444 57221444 T C AASDH Missense_Mutation p.N336S 0.18 deleterious(0) probably_damaging(0.954) TCGA-FD-A3SJ-01 4 71500192 71500192 C A ENAM Missense_Mutation p.N126K 0.42 deleterious(0.01) benign(0.079) TCGA-FD-A3SJ-01 4 71500193 71500193 C A ENAM Missense_Mutation p.Q127K 0.40 deleterious(0.04) benign(0.225) TCGA-FD-A3SJ-01 4 71500195 71500195 G A ENAM Silent p.Q127Q 0.43 TCGA-FD-A3SJ-01 4 80328580 80328580 C T GK2 Missense_Mutation p.D259N 0.29 tolerated(0.1) probably_damaging(1) TCGA-FD-A3SJ-01 5 100238675 100238675 A T ST8SIA4 5'UTR 0.20 TCGA-FD-A3SJ-01 5 10461368 10461368 C T ROPN1L Missense_Mutation p.P164S 0.14 tolerated(0.09) benign(0.249) TCGA-FD-A3SJ-01 5 109152978 109152978 C T MAN2A1 Missense_Mutation p.L650F 0.12 deleterious(0) benign(0.358) TCGA-FD-A3SJ-01 5 140208233 140208233 G A PCDHA6 Missense_Mutation p.S186N 0.38 tolerated_low_confidence(0.39) benign(0.01) TCGA-FD-A3SJ-01 5 140242768 140242768 C G AC005609.1 Missense_Mutation p.V70L 0.26 deleterious_low_confidence(0) benign(0.198) TCGA-FD-A3SJ-01 5 140256681 140256681 G T PCDHA12 Missense_Mutation p.V542L 0.35 tolerated_low_confidence(0.16) benign(0.117) TCGA-FD-A3SJ-01 5 140263756 140263756 C T PCDHA13 Missense_Mutation p.R635C 0.45 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-FD-A3SJ-01 5 140589944 140589944 T A PCDHB12 Missense_Mutation p.S489T 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.609) TCGA-FD-A3SJ-01 5 1479749 1479749 T A LPCAT1 Missense_Mutation p.Q268L 0.28 tolerated(0.08) benign(0.045) TCGA-FD-A3SJ-01 5 154396083 154396083 G T KIF4B Silent p.L888L 0.38 TCGA-FD-A3SJ-01 5 167674760 167674760 G C TENM2 Missense_Mutation p.Q2272H 0.15 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SJ-01 5 176863486 176863486 C T GRK6 Silent p.F453F 0.36 TCGA-FD-A3SJ-01 5 1879903 1879903 G A IRX4 Missense_Mutation p.R151C 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SJ-01 5 36143342 36143342 C G LMBRD2 Missense_Mutation p.G37A 0.25 tolerated(0.94) benign(0.035) TCGA-FD-A3SJ-01 5 37195984 37195984 C T C5orf42 Missense_Mutation p.D1263N 0.12 deleterious(0) probably_damaging(0.978) TCGA-FD-A3SJ-01 5 49695706 49695706 C T EMB Missense_Mutation p.R318K 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-FD-A3SJ-01 5 63509826 63509826 C A RNF180 Missense_Mutation p.H225N 0.41 deleterious(0) benign(0.403) TCGA-FD-A3SJ-01 5 887497 887497 T A BRD9 Silent p.A232A 0.16 TCGA-FD-A3SJ-01 5 94956089 94956089 C G GPR150 Missense_Mutation p.S37C 0.55 deleterious(0.01) benign(0.319) TCGA-FD-A3SJ-01 6 10626656 10626656 A G GCNT2 Missense_Mutation p.Y342C 0.09 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SJ-01 6 10726149 10726149 C T TMEM14C Missense_Mutation p.P36L 0.06 tolerated(0.19) benign(0.032) TCGA-FD-A3SJ-01 6 130762710 130762710 G T TMEM200A Missense_Mutation p.Q381H 0.33 tolerated(0.07) possibly_damaging(0.459) TCGA-FD-A3SJ-01 6 138645190 138645190 G C KIAA1244 Missense_Mutation p.E1634Q 0.26 deleterious(0.04) benign(0.017) TCGA-FD-A3SJ-01 6 146673612 146673612 G C GRM1 Missense_Mutation p.E471D 0.34 tolerated(0.08) benign(0.378) TCGA-FD-A3SJ-01 6 155485726 155485726 C T TIAM2 Missense_Mutation p.H736Y 0.16 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SJ-01 6 158618339 158618339 A G GTF2H5 3'UTR 0.25 TCGA-FD-A3SJ-01 6 18256002 18256002 C G DEK Missense_Mutation p.R178T 0.06 deleterious(0) probably_damaging(0.981) TCGA-FD-A3SJ-01 6 28269137 28269137 C G PGBD1 Missense_Mutation p.F502L 0.28 tolerated(0.26) benign(0.027) TCGA-FD-A3SJ-01 6 28269477 28269477 G A PGBD1 Missense_Mutation p.E616K 0.30 tolerated(0.1) possibly_damaging(0.67) TCGA-FD-A3SJ-01 6 3077181 3077181 A G RIPK1 Missense_Mutation p.M42V 0.33 tolerated(1) benign(0) TCGA-FD-A3SJ-01 6 33235699 33235699 C G VPS52 Silent p.L292L 0.41 TCGA-FD-A3SJ-01 6 56464869 56464869 C A DST Nonsense_Mutation p.E1275* 0.12 TCGA-FD-A3SJ-01 7 107601691 107601691 G A LAMB1 Missense_Mutation p.S690F 0.18 tolerated(0.7) benign(0.005) TCGA-FD-A3SJ-01 7 129688905 129688905 C G ZC3HC1 Missense_Mutation p.E76Q 0.34 deleterious(0.01) possibly_damaging(0.828) TCGA-FD-A3SJ-01 7 140255469 140255469 C G DENND2A Silent p.V668V 0.22 TCGA-FD-A3SJ-01 7 143039032 143039032 G T CLCN1 Silent p.A531A 0.21 TCGA-FD-A3SJ-01 7 143053557 143053557 C G FAM131B 3'UTR 0.22 TCGA-FD-A3SJ-01 7 148312489 148312489 G A C7orf33 Missense_Mutation p.S177N 0.21 deleterious_low_confidence(0) benign(0.383) TCGA-FD-A3SJ-01 7 149421876 149421876 C G KRBA1 Silent p.L354L 0.36 TCGA-FD-A3SJ-01 7 151902229 151902229 G C KMT2C Nonsense_Mutation p.S1308* 0.16 TCGA-FD-A3SJ-01 7 154659794 154659794 G T DPP6 Missense_Mutation p.D602Y 0.24 deleterious(0) benign(0.336) TCGA-FD-A3SJ-01 7 37934072 37934072 G C NME8 Missense_Mutation p.Q468H 0.23 deleterious(0.02) benign(0.02) TCGA-FD-A3SJ-01 7 74211968 74211968 T C GTF2IRD2 Missense_Mutation p.N628S 0.16 tolerated(0.22) benign(0.014) TCGA-FD-A3SJ-01 7 76908345 76908345 G A CCDC146 Missense_Mutation p.E541K 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A3SJ-01 7 84628906 84628906 G A SEMA3D Silent p.D728D 0.20 TCGA-FD-A3SJ-01 7 94989396 94989396 G A PON3 Silent p.T318T 0.38 TCGA-FD-A3SJ-01 7 97862208 97862208 G A TECPR1 Silent p.F583F 0.18 TCGA-FD-A3SJ-01 8 101074892 101074892 C G RGS22 Missense_Mutation p.D481H 0.04 tolerated(0.68) benign(0.033) TCGA-FD-A3SJ-01 8 101074973 101074973 C T RGS22 Missense_Mutation p.E454K 0.05 tolerated(0.05) possibly_damaging(0.51) TCGA-FD-A3SJ-01 8 105511547 105511547 G A LRP12 Missense_Mutation p.S158L 0.06 tolerated(0.09) benign(0.05) TCGA-FD-A3SJ-01 8 12957784 12957784 A T DLC1 Missense_Mutation p.S688T 0.40 tolerated(0.25) benign(0.01) TCGA-FD-A3SJ-01 8 139691860 139691860 C T COL22A1 Silent p.K1024K 0.14 TCGA-FD-A3SJ-01 8 145154091 145154091 G A SHARPIN Nonsense_Mutation p.Q314* 0.41 TCGA-FD-A3SJ-01 8 146068516 146068516 C G ZNF7 Nonsense_Mutation p.S675* 0.43 TCGA-FD-A3SJ-01 8 38109647 38109647 G C DDHD2 Intron 0.19 TCGA-FD-A3SJ-01 8 53126796 53126796 T C ST18 Missense_Mutation p.K8E 0.36 deleterious(0) benign(0.033) TCGA-FD-A3SJ-01 8 54141790 54141790 G C OPRK1 3'UTR 0.62 TCGA-FD-A3SJ-01 8 56986683 56986683 C T RPS20 Silent p.P13P 0.10 TCGA-FD-A3SJ-01 8 57354059 57354059 G A PENK Silent p.G192G 0.44 TCGA-FD-A3SJ-01 8 69005891 69005891 C T PREX2 Missense_Mutation p.L768F 0.11 tolerated_low_confidence(0.56) benign(0.045) TCGA-FD-A3SJ-01 8 72211939 72211939 T A EYA1 Silent p.T191T 0.12 TCGA-FD-A3SJ-01 8 75156998 75156998 C T JPH1 Silent p.L557L 0.16 TCGA-FD-A3SJ-01 8 98943551 98943551 G C MATN2 Silent p.G171G 0.23 TCGA-FD-A3SJ-01 9 104048468 104048468 G C LPPR1 Missense_Mutation p.G112A 0.22 tolerated(0.14) possibly_damaging(0.51) TCGA-FD-A3SJ-01 9 113018787 113018787 C G TXN 5'UTR 0.33 TCGA-FD-A3SJ-01 9 116346235 116346235 C T RGS3 Missense_Mutation p.A848V 0.45 tolerated_low_confidence(0.52) benign(0.002) TCGA-FD-A3SJ-01 9 130145727 130145727 C G GARNL3 Missense_Mutation p.I724M 0.55 tolerated(0.21) possibly_damaging(0.587) TCGA-FD-A3SJ-01 9 135523856 135523856 T A DDX31 Missense_Mutation p.S380C 0.25 deleterious(0.04) benign(0.111) TCGA-FD-A3SJ-01 9 3263030 3263030 G A RFX3 Missense_Mutation p.H504Y 0.51 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SJ-01 9 39109271 39109271 T C CNTNAP3 Missense_Mutation p.I751V 0.55 tolerated(0.07) benign(0.002) TCGA-FD-A3SJ-01 9 79441572 79441572 C G PRUNE2 Silent p.L195L 0.15 TCGA-FD-A3SJ-01 9 94972997 94972997 C A IARS 3'UTR 0.37 TCGA-FD-A3SJ-01 9 95152326 95152326 C G OGN Missense_Mutation p.R147T 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-FD-A3SJ-01 9 95481333 95481333 C T BICD2 Missense_Mutation p.E532K 0.51 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SJ-01 X 137790983 137790983 A T FGF13 Missense_Mutation p.Y109N 0.38 tolerated(0.1) benign(0.007) TCGA-FD-A3SJ-01 X 139866323 139866323 G A CDR1 Missense_Mutation p.S70L 0.45 tolerated(1) benign(0) TCGA-FD-A3SJ-01 X 19390910 19390910 C - MAP3K15 Frame_Shift_Del p.G990Afs*66 0.30 TCGA-FD-A3SJ-01 X 44870231 44870231 G T KDM6A Missense_Mutation p.G137V 0.50 deleterious(0) probably_damaging(0.981) TCGA-FD-A3SJ-01 X 54265480 54265480 G A WNK3 Missense_Mutation p.A1235V 0.14 deleterious(0.01) benign(0.407) TCGA-FD-A3SJ-01 X 55050275 55050275 G A ALAS2 Silent p.V110V 0.33 TCGA-FD-A3SJ-01 X 70811992 70811992 C G ACRC Nonsense_Mutation p.S27* 0.47 TCGA-FD-A3SL-01 10 102262099 102262099 A G SEC31B Missense_Mutation p.L441S 0.29 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SL-01 10 102676648 102676648 G C FAM178A Missense_Mutation p.R169P 0.32 tolerated(0.1) benign(0.01) TCGA-FD-A3SL-01 10 105779625 105779625 G T SLK Missense_Mutation p.S1089I 0.32 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 10 119043391 119043391 G C PDZD8 Silent p.V951V 0.27 TCGA-FD-A3SL-01 10 131761227 131761227 G C EBF3 Missense_Mutation p.L112V 0.24 tolerated(0.08) benign(0.402) TCGA-FD-A3SL-01 10 27537485 27537485 G C RP11-85G18.6 Intron 0.22 TCGA-FD-A3SL-01 10 37520401 37520401 A G ANKRD30A 3'UTR 0.28 TCGA-FD-A3SL-01 10 5488571 5488571 C T NET1 Intron 0.33 TCGA-FD-A3SL-01 10 60560788 60560788 C T BICC1 Missense_Mutation p.T666M 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-FD-A3SL-01 10 82036336 82036336 G T MAT1A Nonsense_Mutation p.Y188* 0.29 TCGA-FD-A3SL-01 10 93582057 93582057 C G TNKS2 Missense_Mutation p.L245V 0.24 deleterious(0) probably_damaging(0.992) TCGA-FD-A3SL-01 11 108122624 108122624 A G ATM Silent p.K556K 0.44 TCGA-FD-A3SL-01 11 120531041 120531041 C T GRIK4 Missense_Mutation p.S5L 0.13 tolerated(0.18) benign(0) TCGA-FD-A3SL-01 11 122928487 122928487 G A HSPA8 Silent p.P632P 0.15 TCGA-FD-A3SL-01 11 128773387 128773387 C A C11orf45 Missense_Mutation p.R52S 0.12 tolerated_low_confidence(0.38) benign(0) TCGA-FD-A3SL-01 11 1782613 1782613 C T CTSD Missense_Mutation p.V52I 0.45 tolerated(0.81) benign(0.001) TCGA-FD-A3SL-01 11 3794940 3794940 T G NUP98 Missense_Mutation p.K175N 0.35 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SL-01 11 59480630 59480630 C T OR10V1 Missense_Mutation p.R230Q 0.36 tolerated(0.2) benign(0.037) TCGA-FD-A3SL-01 11 61404261 61404261 C G RPLP0P2 RNA 0.27 TCGA-FD-A3SL-01 11 63663087 63663089 CTC - MARK2 In_Frame_Del p.S92del 0.18 TCGA-FD-A3SL-01 11 6866955 6866955 C T OR10A5 Silent p.L14L 0.42 TCGA-FD-A3SL-01 11 69486498 69486498 A G ORAOV1 Intron 0.23 TCGA-FD-A3SL-01 11 77991880 77991880 T C GAB2 Missense_Mutation p.Y48C 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SL-01 11 88301116 88301116 C T GRM5 Missense_Mutation p.E579K 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A3SL-01 12 110783086 110783086 G C ATP2A2 Silent p.P880P 0.28 TCGA-FD-A3SL-01 12 111953957 111953957 C T ATXN2 Splice_Site p.X619_splice 0.18 TCGA-FD-A3SL-01 12 119617346 119617346 G T HSPB8 Missense_Mutation p.A77S 0.24 tolerated(0.48) benign(0) TCGA-FD-A3SL-01 12 123355588 123355588 G A VPS37B Silent p.N44N 0.25 TCGA-FD-A3SL-01 12 123815916 123815916 C T SBNO1 Missense_Mutation p.E306K 0.31 deleterious(0.05) possibly_damaging(0.833) TCGA-FD-A3SL-01 12 12788795 12788795 C T CREBL2 Missense_Mutation p.R34W 0.42 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SL-01 12 32138036 32138037 - TA KIAA1551 Frame_Shift_Ins p.D1384* 0.13 TCGA-FD-A3SL-01 12 49334730 49334730 C G ARF3 Splice_Site p.X50_splice 0.44 TCGA-FD-A3SL-01 12 49424468 49424475 GACTGGGC - KMT2D Frame_Shift_Del p.C4583* 0.30 TCGA-FD-A3SL-01 12 51442969 51442969 G A LETMD1 Splice_Site p.X92_splice 0.12 TCGA-FD-A3SL-01 12 52627055 52627055 G A KRT7 5'UTR 0.41 TCGA-FD-A3SL-01 12 52627056 52627056 C T KRT7 5'UTR 0.41 TCGA-FD-A3SL-01 12 52642496 52642496 T G KRT7 Silent p.A454A 0.37 TCGA-FD-A3SL-01 12 57501482 57501482 C T STAT6 Missense_Mutation p.S54N 0.12 tolerated(0.19) benign(0.381) TCGA-FD-A3SL-01 12 57556105 57556105 G T LRP1 Silent p.V736V 0.27 TCGA-FD-A3SL-01 12 69113358 69113358 G C NUP107 Missense_Mutation p.G392A 0.26 deleterious(0.01) probably_damaging(0.964) TCGA-FD-A3SL-01 12 7868804 7868804 G A DPPA3 Missense_Mutation p.R113K 0.22 tolerated(0.9) benign(0.002) TCGA-FD-A3SL-01 12 83324287 83324287 T C TMTC2 Missense_Mutation p.Y521H 0.39 tolerated(0.48) benign(0.003) TCGA-FD-A3SL-01 12 85450778 85450778 A T LRRIQ1 Missense_Mutation p.Y736F 0.22 tolerated(0.37) benign(0) TCGA-FD-A3SL-01 12 89917268 89917268 C A GALNT4 Missense_Mutation p.E353D 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A3SL-01 12 90013790 90013790 C G ATP2B1 Missense_Mutation p.E605D 0.35 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SL-01 13 108922250 108922250 G C TNFSF13B Missense_Mutation p.D3H 0.38 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-FD-A3SL-01 13 25832777 25832777 G C MTMR6 Missense_Mutation p.N260K 0.33 deleterious(0.04) probably_damaging(0.975) TCGA-FD-A3SL-01 13 42877222 42877222 A G AKAP11 Missense_Mutation p.Y1447C 0.32 tolerated(0.19) benign(0) TCGA-FD-A3SL-01 13 49039151 49039160 GATCAAAGAA - RB1 Frame_Shift_Del p.I744Rfs*7 0.20 TCGA-FD-A3SL-01 13 49039203 49039203 A C RB1 Missense_Mutation p.M761L 0.15 tolerated(0.12) probably_damaging(0.98) TCGA-FD-A3SL-01 13 99020427 99020427 C T FARP1 Nonsense_Mutation p.Q126* 0.13 TCGA-FD-A3SL-01 14 105642983 105642983 C G NUDT14 Missense_Mutation p.G106R 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 14 21511342 21511342 G T RNASE7 Missense_Mutation p.R64L 0.24 tolerated(0.2) benign(0.052) TCGA-FD-A3SL-01 14 23346425 23346425 G T LRP10 Nonsense_Mutation p.E611* 0.25 TCGA-FD-A3SL-01 14 28734142 28734142 C T BNIP3P1 RNA 0.23 TCGA-FD-A3SL-01 14 30098274 30098274 T C PRKD1 Silent p.V566V 0.28 TCGA-FD-A3SL-01 14 31355167 31355167 A T COCH Missense_Mutation p.S376C 0.32 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SL-01 14 32031321 32031321 C T NUBPL Silent p.I52I 0.20 TCGA-FD-A3SL-01 14 38061854 38061862 GTTCATGGA - FOXA1 In_Frame_Del p.S43_N45del 0.18 TCGA-FD-A3SL-01 14 38723655 38723655 T C CLEC14A 3'UTR 0.33 TCGA-FD-A3SL-01 14 39716256 39716256 C A MIA2 Missense_Mutation p.Q160K 0.33 tolerated(0.06) possibly_damaging(0.676) TCGA-FD-A3SL-01 14 69263060 69263060 G A ZFP36L1 5'Flank 0.34 TCGA-FD-A3SL-01 14 89069337 89069337 C G ZC3H14 Silent p.L560L 0.26 TCGA-FD-A3SL-01 14 91700960 91700960 G A GPR68 Silent p.I145I 0.22 TCGA-FD-A3SL-01 14 91976034 91976034 C T SMEK1 5'UTR 0.62 TCGA-FD-A3SL-01 15 101813019 101813019 C T VIMP Nonsense_Mutation p.W176* 0.26 TCGA-FD-A3SL-01 15 101922336 101922336 G A PCSK6 Missense_Mutation p.S497L 0.21 deleterious(0.05) benign(0.003) TCGA-FD-A3SL-01 15 30010801 30010801 C A TJP1 Missense_Mutation p.G1182V 0.26 tolerated_low_confidence(0.58) benign(0.001) TCGA-FD-A3SL-01 15 34628777 34628777 G A SLC12A6 Silent p.L35L 0.24 TCGA-FD-A3SL-01 15 44109632 44109632 C T MFAP1 Missense_Mutation p.E32K 0.29 tolerated(0.22) benign(0.292) TCGA-FD-A3SL-01 15 49320761 49320761 C G SECISBP2L Missense_Mutation p.Q261H 0.26 deleterious(0.03) probably_damaging(0.971) TCGA-FD-A3SL-01 15 62182381 62182381 G A VPS13C Silent p.S3108S 0.28 TCGA-FD-A3SL-01 15 63541870 63541870 G A RAB8B Missense_Mutation p.R71Q 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A3SL-01 15 63970149 63970149 C G HERC1 Missense_Mutation p.R2322P 0.25 probably_damaging(0.942) TCGA-FD-A3SL-01 15 64658144 64658144 T G KIAA0101 3'UTR 0.18 TCGA-FD-A3SL-01 15 79750750 79750750 C T KIAA1024 Missense_Mutation p.P754L 0.22 tolerated(0.33) benign(0.001) TCGA-FD-A3SL-01 15 84159597 84159597 C G SH3GL3 Intron 0.33 TCGA-FD-A3SL-01 16 1248648 1248648 C T CACNA1H Missense_Mutation p.T226M 0.37 deleterious(0) possibly_damaging(0.863) TCGA-FD-A3SL-01 16 1822451 1822451 G C MRPS34 Missense_Mutation p.P143R 0.23 deleterious(0.03) probably_damaging(1) TCGA-FD-A3SL-01 16 29825567 29825567 C T PRRT2 Intron 0.30 TCGA-FD-A3SL-01 16 29908193 29908193 G A SEZ6L2 Missense_Mutation p.T154M 0.34 deleterious(0.01) benign(0.25) TCGA-FD-A3SL-01 16 30198258 30198259 TC CCT CORO1A Frame_Shift_Ins p.L148Pfs*2 0.16 TCGA-FD-A3SL-01 16 3139752 3139752 C G ZSCAN10 Missense_Mutation p.Q506H 0.64 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A3SL-01 16 3788651 3788651 C G CREBBP Missense_Mutation p.D1435H 0.39 unknown(0) TCGA-FD-A3SL-01 16 4511813 4511813 C A NMRAL1 Nonsense_Mutation p.E290* 0.36 TCGA-FD-A3SL-01 16 46705699 46705699 G A VPS35 Missense_Mutation p.P481L 0.31 tolerated(0.1) benign(0.071) TCGA-FD-A3SL-01 16 48244929 48244929 G A ABCC11 Missense_Mutation p.A513V 0.26 tolerated(0.4) benign(0.009) TCGA-FD-A3SL-01 16 56921870 56921870 C G SLC12A3 Missense_Mutation p.L738V 0.31 tolerated(0.12) benign(0.046) TCGA-FD-A3SL-01 16 66944399 66944399 G C CDH16 Missense_Mutation p.P644R 0.35 tolerated(0.1) benign(0.338) TCGA-FD-A3SL-01 16 67197579 67197579 C T FBXL8 Silent p.C327C 0.42 TCGA-FD-A3SL-01 16 69726188 69726188 A C NFAT5 Missense_Mutation p.L820F 0.19 probably_damaging(0.997) TCGA-FD-A3SL-01 16 89789221 89789221 G C ZNF276 Missense_Mutation p.G163A 0.21 deleterious(0.05) benign(0.017) TCGA-FD-A3SL-01 17 15973488 15973488 T A NCOR1 Missense_Mutation p.T1502S 0.19 benign(0.004) TCGA-FD-A3SL-01 17 18181485 18181485 G A TOP3A Silent p.N777N 0.17 TCGA-FD-A3SL-01 17 18638504 18638504 T A TRIM16L Missense_Mutation p.F260I 0.14 deleterious(0) probably_damaging(0.981) TCGA-FD-A3SL-01 17 2310456 2310456 C G AC006435.1 Missense_Mutation p.D106H 0.50 unknown(0) TCGA-FD-A3SL-01 17 28960364 28960364 G T LRRC37BP1 RNA 0.62 TCGA-FD-A3SL-01 17 3194930 3194930 C G OR3A1 Nonstop_Mutation p.*316Sext*? 0.19 TCGA-FD-A3SL-01 17 37427047 37427047 A T FBXL20 Splice_Site p.X296_splice 0.51 TCGA-FD-A3SL-01 17 3957435 3957435 C T ZZEF1 Missense_Mutation p.D1784N 0.16 deleterious(0.03) possibly_damaging(0.766) TCGA-FD-A3SL-01 17 39675122 39675122 G T KRT15 5'UTR 0.62 TCGA-FD-A3SL-01 17 44248600 44248600 G C KANSL1 Missense_Mutation p.R304G 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 17 4805975 4805975 C T CHRNE Missense_Mutation p.E44K 0.36 tolerated(0.91) benign(0.004) TCGA-FD-A3SL-01 17 4837513 4837513 C T GP1BA Silent p.L538L 0.22 TCGA-FD-A3SL-01 17 60654136 60654136 G C TLK2 Missense_Mutation p.K396N 0.58 deleterious(0.02) benign(0.105) TCGA-FD-A3SL-01 17 64299005 64299005 G A PRKCA Silent p.A12A 0.41 TCGA-FD-A3SL-01 17 6589522 6589522 C G SLC13A5 3'UTR 0.36 TCGA-FD-A3SL-01 17 73498037 73498037 C T CASKIN2 Missense_Mutation p.E1040K 0.33 tolerated(0.36) benign(0.018) TCGA-FD-A3SL-01 17 7577079 7577079 C A TP53 Nonsense_Mutation p.E287* 0.51 TCGA-FD-A3SL-01 17 80789041 80789042 - A ZNF750 Frame_Shift_Ins p.Y431Vfs*29 0.15 TCGA-FD-A3SL-01 18 21226188 21226188 C T ANKRD29 Missense_Mutation p.V66I 0.26 tolerated(0.63) possibly_damaging(0.908) TCGA-FD-A3SL-01 18 30350174 30350174 C T KLHL14 Silent p.L127L 0.26 TCGA-FD-A3SL-01 18 5406924 5406928 TTGGT - EPB41L3 Frame_Shift_Del p.T733Hfs*2 0.24 TCGA-FD-A3SL-01 18 56033354 56033354 G A NEDD4L Missense_Mutation p.E653K 0.48 deleterious(0.04) possibly_damaging(0.708) TCGA-FD-A3SL-01 18 67860668 67860668 G A RTTN Missense_Mutation p.S288F 0.25 deleterious(0.03) possibly_damaging(0.609) TCGA-FD-A3SL-01 18 6890047 6890047 T A ARHGAP28 Missense_Mutation p.I407N 0.32 deleterious(0) possibly_damaging(0.836) TCGA-FD-A3SL-01 19 13255242 13255242 G C STX10 Missense_Mutation p.I244M 0.44 deleterious(0.03) benign(0.278) TCGA-FD-A3SL-01 19 14000223 14000223 C G C19orf57 Silent p.V482V 0.26 TCGA-FD-A3SL-01 19 1475148 1475148 G T C19orf25 Silent p.G80G 0.55 TCGA-FD-A3SL-01 19 32930033 32930033 A G DPY19L3 Silent p.R204R 0.37 TCGA-FD-A3SL-01 19 34180217 34180217 T A CHST8 Missense_Mutation p.I17N 0.16 deleterious(0) possibly_damaging(0.628) TCGA-FD-A3SL-01 19 37045699 37045699 C A ZNF529 Splice_Site p.X37_splice 0.33 TCGA-FD-A3SL-01 19 38939069 38939069 T A RYR1 Missense_Mutation p.L292H 0.07 probably_damaging(0.992) TCGA-FD-A3SL-01 19 38939070 38939070 C A RYR1 Silent p.L292L 0.07 TCGA-FD-A3SL-01 19 39660239 39660239 A C PAK4 Missense_Mutation p.N16H 0.36 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SL-01 19 41035036 41035036 G A SPTBN4 Missense_Mutation p.E1316K 0.21 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SL-01 19 41932181 41932181 C G B3GNT8 Missense_Mutation p.R168T 0.34 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SL-01 19 45767973 45767973 G A MARK4 Silent p.K129K 0.63 TCGA-FD-A3SL-01 19 45895489 45895489 G A PPP1R13L Silent p.L488L 0.53 TCGA-FD-A3SL-01 19 49013790 49013790 A G LMTK3 Missense_Mutation p.C75R 0.55 probably_damaging(0.975) TCGA-FD-A3SL-01 19 49971709 49971709 C T ALDH16A1 Silent p.D670D 0.59 TCGA-FD-A3SL-01 19 5258028 5258028 C T PTPRS Missense_Mutation p.E236K 0.34 deleterious(0.03) benign(0.103) TCGA-FD-A3SL-01 19 53793954 53793954 T G BIRC8 5'UTR 0.58 TCGA-FD-A3SL-01 19 54483176 54483176 C G CACNG8 Silent p.L141L 0.69 TCGA-FD-A3SL-01 19 55814746 55814746 G A BRSK1 Missense_Mutation p.D366N 0.18 tolerated(0.06) possibly_damaging(0.539) TCGA-FD-A3SL-01 19 5691448 5691448 A C RPL36 Missense_Mutation p.K71T 0.28 deleterious(0.01) possibly_damaging(0.588) TCGA-FD-A3SL-01 19 57335915 57335915 C T PEG3 Missense_Mutation p.E37K 0.64 tolerated(0.08) benign(0.307) TCGA-FD-A3SL-01 19 5824219 5824219 A G NRTN Missense_Mutation p.S15G 0.26 tolerated(0.55) probably_damaging(0.931) TCGA-FD-A3SL-01 19 7592790 7592790 A G MCOLN1 Missense_Mutation p.N241D 0.23 tolerated(0.25) probably_damaging(0.953) TCGA-FD-A3SL-01 19 9086960 9086960 C G MUC16 Missense_Mutation p.E1619Q 0.33 unknown(0) TCGA-FD-A3SL-01 1 100614674 100614674 C G TRMT13 3'UTR 0.26 TCGA-FD-A3SL-01 1 114483496 114483496 C T HIPK1 Missense_Mutation p.T164I 0.40 deleterious(0) possibly_damaging(0.52) TCGA-FD-A3SL-01 1 116206768 116206768 C T VANGL1 Missense_Mutation p.L231F 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 1 144852355 144852355 C T PDE4DIP Silent p.%3D 0.17 TCGA-FD-A3SL-01 1 150526564 150526564 G C ADAMTSL4 Missense_Mutation p.G366A 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A3SL-01 1 152552101 152552101 C G LCE3D 3'UTR 0.26 TCGA-FD-A3SL-01 1 153949730 153949730 G A JTB 5'UTR 0.26 TCGA-FD-A3SL-01 1 155144951 155144951 C T RP11-201K10.3 Intron 0.25 TCGA-FD-A3SL-01 1 156051352 156051352 C G MEX3A Missense_Mutation p.E146D 0.31 deleterious(0.01) benign(0.131) TCGA-FD-A3SL-01 1 159283465 159283465 A G OR10J3 Missense_Mutation p.Y329H 0.33 deleterious_low_confidence(0) benign(0.403) TCGA-FD-A3SL-01 1 167339439 167339439 T G POU2F1 Silent p.S90S 0.17 TCGA-FD-A3SL-01 1 167921068 167921068 T G DCAF6 Missense_Mutation p.L43R 0.62 deleterious(0.03) probably_damaging(0.998) TCGA-FD-A3SL-01 1 169696572 169696572 A C SELE Silent p.P521P 0.49 TCGA-FD-A3SL-01 1 171605063 171605063 T C MYOC 3'UTR 0.09 TCGA-FD-A3SL-01 1 17312615 17312615 C T ATP13A2 3'UTR 0.31 TCGA-FD-A3SL-01 1 179077602 179077602 G A ABL2 Missense_Mutation p.L934F 0.52 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FD-A3SL-01 1 179311183 179311183 C A SOAT1 Intron 0.25 TCGA-FD-A3SL-01 1 183908076 183908076 C T COLGALT2 Missense_Mutation p.G567E 0.11 tolerated(0.27) possibly_damaging(0.757) TCGA-FD-A3SL-01 1 186022986 186022986 C A HMCN1 Silent p.R2244R 0.14 TCGA-FD-A3SL-01 1 200569537 200569537 T A KIF14 Silent p.T749T 0.18 TCGA-FD-A3SL-01 1 236767261 236767261 G T HEATR1 Missense_Mutation p.F45L 0.39 deleterious(0.01) possibly_damaging(0.761) TCGA-FD-A3SL-01 1 2453183 2453183 C G PANK4 Missense_Mutation p.V61L 0.24 tolerated(0.19) possibly_damaging(0.542) TCGA-FD-A3SL-01 1 248224761 248224761 C T OR2L3 Missense_Mutation p.R260C 0.27 tolerated(0.09) benign(0.066) TCGA-FD-A3SL-01 1 27094374 27094374 C T ARID1A Silent p.L1028L 0.33 TCGA-FD-A3SL-01 1 38161616 38161616 G A CDCA8 Silent p.A86A 0.17 TCGA-FD-A3SL-01 1 44423127 44423127 C T IPO13 Silent p.V482V 0.15 TCGA-FD-A3SL-01 1 44423149 44423149 G T IPO13 Missense_Mutation p.G490W 0.13 deleterious(0) possibly_damaging(0.865) TCGA-FD-A3SL-01 1 44423150 44423150 G T IPO13 Missense_Mutation p.G490V 0.14 deleterious(0.01) benign(0.053) TCGA-FD-A3SL-01 1 63284996 63284996 C G ATG4C Missense_Mutation p.H239D 0.30 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 1 66074462 66074462 A G LEPR Missense_Mutation p.K544E 0.14 tolerated(0.17) benign(0.008) TCGA-FD-A3SL-01 1 85824470 85824470 C G DDAH1 Missense_Mutation p.E122Q 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-FD-A3SL-01 1 87563566 87563566 G C HS2ST1 Missense_Mutation p.E212Q 0.31 tolerated(0.07) benign(0.031) TCGA-FD-A3SL-01 1 8927305 8927305 C T ENO1 Silent p.K105K 0.29 TCGA-FD-A3SL-01 1 92181853 92181853 G A TGFBR3 Silent p.L602L 0.26 TCGA-FD-A3SL-01 1 92710355 92710355 C G C1orf146 Missense_Mutation p.R117G 0.40 deleterious(0) possibly_damaging(0.889) TCGA-FD-A3SL-01 1 97236333 97236333 C G PTBP2 Missense_Mutation p.H120D 0.32 tolerated(0.2) benign(0.197) TCGA-FD-A3SL-01 20 10541378 10541378 G C SLX4IP Missense_Mutation p.D50H 0.21 tolerated(0.14) benign(0.441) TCGA-FD-A3SL-01 20 33460480 33460480 C T GGT7 Missense_Mutation p.E47K 0.24 tolerated_low_confidence(0.07) benign(0.403) TCGA-FD-A3SL-01 20 4228599 4228599 G A ADRA1D Missense_Mutation p.R336C 0.26 deleterious(0) possibly_damaging(0.747) TCGA-FD-A3SL-01 20 47248883 47248883 C G PREX1 Silent p.A1486A 0.27 TCGA-FD-A3SL-01 20 4854733 4854733 G A SLC23A2 Silent p.I317I 0.21 TCGA-FD-A3SL-01 21 33044500 33044500 T C SCAF4 Missense_Mutation p.M886V 0.15 unknown(0) TCGA-FD-A3SL-01 21 45717699 45717699 C G AIRE 3'UTR 0.29 TCGA-FD-A3SL-01 21 47330884 47330884 C T PCBP3 Silent p.I180I 0.44 TCGA-FD-A3SL-01 21 47722421 47722421 T G C21orf58 Missense_Mutation p.K264T 0.43 deleterious(0.04) possibly_damaging(0.844) TCGA-FD-A3SL-01 22 19951251 19951251 G C COMT Missense_Mutation p.R151P 0.53 deleterious(0) benign(0.23) TCGA-FD-A3SL-01 22 29925227 29925227 A T THOC5 Missense_Mutation p.D283E 0.37 deleterious(0) benign(0.326) TCGA-FD-A3SL-01 2 109092306 109092306 G C GCC2 Missense_Mutation p.K1020N 0.48 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SL-01 2 179579734 179579734 C T TTN Missense_Mutation p.V8727I 0.55 TCGA-FD-A3SL-01 2 191797524 191797524 A C GLS Intron 0.41 TCGA-FD-A3SL-01 2 202687611 202687611 C G CDK15 Missense_Mutation p.F176L 0.36 tolerated(0.83) benign(0.268) TCGA-FD-A3SL-01 2 20647449 20647449 C A RHOB Missense_Mutation p.P75T 0.14 deleterious(0) possibly_damaging(0.558) TCGA-FD-A3SL-01 2 220098444 220098444 G C ANKZF1 Missense_Mutation p.R276P 0.45 deleterious(0.01) possibly_damaging(0.815) TCGA-FD-A3SL-01 2 220367155 220367155 A C GMPPA Missense_Mutation p.T161P 0.48 deleterious(0) probably_damaging(0.966) TCGA-FD-A3SL-01 2 233075041 233075041 A G DIS3L2 Missense_Mutation p.D377G 0.51 deleterious(0) benign(0.035) TCGA-FD-A3SL-01 2 233409180 233409180 G T CHRNG Missense_Mutation p.G380V 0.44 tolerated(0.56) benign(0.013) TCGA-FD-A3SL-01 2 233641191 233641191 G A GIGYF2 Intron 0.47 TCGA-FD-A3SL-01 2 234465604 234465604 G C USP40 Missense_Mutation p.S160C 0.54 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 2 234601626 234601626 C T UGT1A6 5'UTR 0.50 TCGA-FD-A3SL-01 2 241661251 241661251 G A KIF1A Silent p.H1572H 0.38 TCGA-FD-A3SL-01 2 27361271 27361271 C T C2orf53 5'UTR 0.56 TCGA-FD-A3SL-01 2 62227996 62227996 G T COMMD1 Missense_Mutation p.R114L 0.49 tolerated(0.13) possibly_damaging(0.559) TCGA-FD-A3SL-01 2 74089432 74089432 G A STAMBP 3'UTR 0.24 TCGA-FD-A3SL-01 2 74432891 74432897 GGCAGGA - MTHFD2 Frame_Shift_Del p.Q55* 0.47 TCGA-FD-A3SL-01 2 74754952 74754952 T C AUP1 Missense_Mutation p.E251G 0.16 deleterious(0) probably_damaging(0.968) TCGA-FD-A3SL-01 2 74776495 74776495 C A LOXL3 Splice_Site p.X231_splice 0.25 TCGA-FD-A3SL-01 2 75108948 75108948 G T HK2 Missense_Mutation p.A561S 0.50 tolerated(1) benign(0.001) TCGA-FD-A3SL-01 2 90458629 90458629 A G CH17-132F21.1 Missense_Mutation p.D102G 0.07 TCGA-FD-A3SL-01 2 96810513 96810513 G A DUSP2 Missense_Mutation p.P166L 0.70 deleterious(0) possibly_damaging(0.71) TCGA-FD-A3SL-01 2 98341692 98341692 G A ZAP70 Silent p.G180G 0.12 TCGA-FD-A3SL-01 3 108572572 108572572 G T TRAT1 Missense_Mutation p.D137Y 0.21 deleterious(0) possibly_damaging(0.521) TCGA-FD-A3SL-01 3 111718304 111718304 G A TAGLN3 Missense_Mutation p.R12Q 0.17 tolerated(0.08) benign(0.406) TCGA-FD-A3SL-01 3 122399790 122399790 G T PARP14 Silent p.P20P 0.30 TCGA-FD-A3SL-01 3 126191141 126191141 C G ZXDC Missense_Mutation p.E305D 0.32 tolerated(0.09) probably_damaging(0.999) TCGA-FD-A3SL-01 3 130174391 130174391 C T COL6A5 Missense_Mutation p.T2224M 0.15 tolerated_low_confidence(0.07) benign(0) TCGA-FD-A3SL-01 3 130282263 130282263 C T COL6A6 Missense_Mutation p.A139V 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-FD-A3SL-01 3 135864086 135864086 C T PPP2R3A 3'UTR 0.36 TCGA-FD-A3SL-01 3 16217067 16217067 G A GALNT15 Missense_Mutation p.A137T 0.20 tolerated(0.32) benign(0.003) TCGA-FD-A3SL-01 3 179131259 179131259 G C GNB4 Missense_Mutation p.R214G 0.21 deleterious(0) probably_damaging(0.97) TCGA-FD-A3SL-01 3 186503971 186503974 TGTT - EIF4A2 Frame_Shift_Del p.V181Wfs*8 0.55 TCGA-FD-A3SL-01 3 186793484 186793484 C T ST6GAL1 Silent p.L372L 0.07 TCGA-FD-A3SL-01 3 186953686 186953686 T A MASP1 Missense_Mutation p.D658V 0.29 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SL-01 3 49051011 49051011 T A WDR6 Missense_Mutation p.Y712N 0.32 tolerated(0.17) benign(0.372) TCGA-FD-A3SL-01 3 49924737 49924737 A C MST1R 3'UTR 0.30 TCGA-FD-A3SL-01 3 88189288 88189288 C G ZNF654 Missense_Mutation p.N276K 0.39 deleterious(0.02) benign(0.016) TCGA-FD-A3SL-01 4 106158065 106158065 C T TET2 Missense_Mutation p.P989L 0.54 tolerated(0.24) benign(0.028) TCGA-FD-A3SL-01 4 156136030 156136030 C T NPY2R Silent p.I313I 0.34 TCGA-FD-A3SL-01 4 159593615 159593615 G T ETFDH Missense_Mutation p.V3L 0.32 tolerated_low_confidence(0.78) benign(0) TCGA-FD-A3SL-01 4 41259007 41259007 C G UCHL1 Missense_Mutation p.P5R 0.30 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SL-01 4 982595 982595 G T SLC26A1 3'UTR 0.62 TCGA-FD-A3SL-01 5 10254792 10254792 A T CCT5 Missense_Mutation p.D58V 0.22 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SL-01 5 121786478 121786478 C T SNCAIP Nonsense_Mutation p.Q646* 0.16 TCGA-FD-A3SL-01 5 122888798 122888798 A C CSNK1G3 Intron 0.12 TCGA-FD-A3SL-01 5 130799891 130799891 C T RAPGEF6 Missense_Mutation p.E775K 0.42 deleterious(0.01) possibly_damaging(0.852) TCGA-FD-A3SL-01 5 134143532 134143532 A C DDX46 Silent p.L683L 0.38 TCGA-FD-A3SL-01 5 137278576 137278576 C G FAM13B Missense_Mutation p.R837P 0.44 deleterious(0) probably_damaging(0.988) TCGA-FD-A3SL-01 5 140249821 140249821 C G PCDHA11 Nonsense_Mutation p.S378* 0.20 TCGA-FD-A3SL-01 5 149011634 149011634 C A ARHGEF37 Missense_Mutation p.D636E 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 5 1495028 1495028 C A LPCAT1 Missense_Mutation p.V94F 0.46 tolerated(0.25) benign(0.033) TCGA-FD-A3SL-01 5 150660726 150660726 C T SLC36A3 Silent p.K372K 0.12 TCGA-FD-A3SL-01 5 161128777 161128777 T A GABRA6 Nonstop_Mutation p.*454Kext*7 0.17 TCGA-FD-A3SL-01 5 170737358 170737358 A T TLX3 Missense_Mutation p.Q209L 0.17 deleterious(0) benign(0.239) TCGA-FD-A3SL-01 5 240522 240522 G A SDHA Missense_Mutation p.M494I 0.23 deleterious_low_confidence(0.05) benign(0) TCGA-FD-A3SL-01 5 41917223 41917223 A G C5orf51 Missense_Mutation p.D236G 0.34 tolerated(0.24) benign(0.007) TCGA-FD-A3SL-01 5 56181840 56181840 G A MAP3K1 Missense_Mutation p.R1355H 0.38 tolerated(0.05) probably_damaging(0.995) TCGA-FD-A3SL-01 5 6750553 6750553 C T PAPD7 Silent p.S349S 0.35 TCGA-FD-A3SL-01 5 88018629 88018629 G C MEF2C Missense_Mutation p.P415R 0.29 deleterious(0.03) probably_damaging(1) TCGA-FD-A3SL-01 6 10400738 10400738 C G TFAP2A Missense_Mutation p.R323P 0.28 deleterious(0) probably_damaging(0.982) TCGA-FD-A3SL-01 6 10586193 10586193 A C GCNT2 Intron 0.48 TCGA-FD-A3SL-01 6 121577357 121577357 G C TBC1D32 Nonsense_Mutation p.S603* 0.35 TCGA-FD-A3SL-01 6 1610867 1610867 G A FOXC1 Missense_Mutation p.A63T 0.08 tolerated(0.08) possibly_damaging(0.658) TCGA-FD-A3SL-01 6 26368983 26368983 G A BTN3A2 Silent p.P92P 0.20 TCGA-FD-A3SL-01 6 31733543 31733543 C T VWA7 Missense_Mutation p.R835Q 0.08 tolerated(1) benign(0.001) TCGA-FD-A3SL-01 6 32138226 32138226 G A AGPAT1 Silent p.V162V 0.37 TCGA-FD-A3SL-01 6 34494142 34494142 G C PACSIN1 Missense_Mutation p.W20C 0.23 deleterious(0) probably_damaging(0.99) TCGA-FD-A3SL-01 6 34494143 34494143 G T PACSIN1 Nonsense_Mutation p.E21* 0.23 TCGA-FD-A3SL-01 6 38828230 38828230 A G DNAH8 Intron 0.25 TCGA-FD-A3SL-01 6 56468442 56468442 C A DST Intron 0.42 TCGA-FD-A3SL-01 6 64408130 64408130 G C PHF3 Missense_Mutation p.E900Q 0.34 deleterious(0) possibly_damaging(0.838) TCGA-FD-A3SL-01 6 83848597 83848597 T A DOPEY1 Silent p.S1612S 0.39 TCGA-FD-A3SL-01 7 100608645 100608645 G A MUC3A Intron 0.10 TCGA-FD-A3SL-01 7 100608841 100608841 C G MUC3A Missense_Mutation p.I740M 0.11 deleterious(0.04) possibly_damaging(0.902) TCGA-FD-A3SL-01 7 104752743 104752743 A C KMT2E Missense_Mutation p.T1514P 0.32 tolerated_low_confidence(0.43) benign(0.094) TCGA-FD-A3SL-01 7 128484781 128484781 A T FLNC Nonsense_Mutation p.K1088* 0.26 TCGA-FD-A3SL-01 7 129062699 129062699 G A AHCYL2 Missense_Mutation p.E494K 0.22 tolerated(0.14) benign(0.061) TCGA-FD-A3SL-01 7 129663417 129663417 G C ZC3HC1 Silent p.G389G 0.18 TCGA-FD-A3SL-01 7 27181323 27181323 A C HOXA5 3'UTR 0.21 TCGA-FD-A3SL-01 7 55863550 55863550 C T SEPT14 3'UTR 0.33 TCGA-FD-A3SL-01 7 6862992 6862992 C A CCZ1B Splice_Site p.X131_splice 0.12 TCGA-FD-A3SL-01 7 72883944 72883944 G A BAZ1B Silent p.F923F 0.21 TCGA-FD-A3SL-01 7 83758479 83758479 G T SEMA3A Missense_Mutation p.T98N 0.25 tolerated(0.34) benign(0.047) TCGA-FD-A3SL-01 7 84628794 84628794 T C SEMA3D Missense_Mutation p.R766G 0.32 tolerated(0.55) benign(0.014) TCGA-FD-A3SL-01 7 92732105 92732105 A G SAMD9 Silent p.A1102A 0.23 TCGA-FD-A3SL-01 7 99918707 99918707 C T SPDYE3 3'UTR 0.21 TCGA-FD-A3SL-01 8 136619260 136619260 C A KHDRBS3 Missense_Mutation p.S290R 0.28 tolerated(0.14) possibly_damaging(0.494) TCGA-FD-A3SL-01 8 145583976 145583976 G A SLC52A2 Missense_Mutation p.R275H 0.33 tolerated(0.28) benign(0.021) TCGA-FD-A3SL-01 8 30998994 30998994 A C WRN Missense_Mutation p.T1006P 0.31 tolerated(0.09) possibly_damaging(0.572) TCGA-FD-A3SL-01 8 49831338 49831338 C G SNAI2 3'UTR 0.23 TCGA-FD-A3SL-01 8 95523580 95523580 C T KIAA1429 Missense_Mutation p.V1075I 0.36 tolerated(0.07) probably_damaging(0.994) TCGA-FD-A3SL-01 8 97342490 97342490 A G PTDSS1 Missense_Mutation p.H408R 0.29 tolerated(0.34) benign(0.013) TCGA-FD-A3SL-01 9 110094048 110094048 G T RAD23B 3'UTR 0.26 TCGA-FD-A3SL-01 9 124751938 124751938 G A TTLL11 Missense_Mutation p.R359C 0.31 deleterious(0) probably_damaging(0.94) TCGA-FD-A3SL-01 9 125273238 125273238 C G OR1J2 Missense_Mutation p.S53C 0.30 deleterious_low_confidence(0.01) benign(0.029) TCGA-FD-A3SL-01 9 129957439 129957439 G A RALGPS1 Missense_Mutation p.G327D 0.24 tolerated(0.43) benign(0.001) TCGA-FD-A3SL-01 9 135275538 135275538 C G TTF1 Missense_Mutation p.G492A 0.23 tolerated(0.23) benign(0.057) TCGA-FD-A3SL-01 9 137804955 137804955 C T FCN1 Silent p.G125G 0.39 TCGA-FD-A3SL-01 9 14146709 14146709 T C NFIB Missense_Mutation p.T302A 0.30 tolerated(0.22) benign(0.185) TCGA-FD-A3SL-01 9 14819292 14819292 C G FREM1 Missense_Mutation p.G829A 0.23 tolerated(0.05) benign(0.303) TCGA-FD-A3SL-01 9 33467712 33467712 G A NOL6 Missense_Mutation p.H527Y 0.20 tolerated(0.33) probably_damaging(0.937) TCGA-FD-A3SL-01 9 34401056 34401056 T C FAM219A Missense_Mutation p.D155G 0.15 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SL-01 9 34971556 34971556 C T KIAA1045 Silent p.G87G 0.32 TCGA-FD-A3SL-01 9 37486692 37486692 T G POLR1E Intron 0.26 TCGA-FD-A3SL-01 9 69423627 69423627 T C ANKRD20A4 Silent p.S641S 0.10 TCGA-FD-A3SL-01 9 74970975 74970975 C G ZFAND5 Missense_Mutation p.R179P 0.31 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SL-01 9 78506171 78506171 G T PCSK5 Missense_Mutation p.C25F 0.29 tolerated(0.61) benign(0.006) TCGA-FD-A3SL-01 9 86403527 86403527 C G GKAP1 Missense_Mutation p.E143Q 0.28 tolerated(0.3) benign(0.335) TCGA-FD-A3SL-01 9 87338533 87338533 A T NTRK2 Missense_Mutation p.E210V 0.21 tolerated(0.28) probably_damaging(0.999) TCGA-FD-A3SL-01 X 109416577 109416577 C A TMEM164 Silent p.T264T 0.60 TCGA-FD-A3SL-01 X 123040977 123040977 G A XIAP Silent p.K480K 0.64 TCGA-FD-A3SL-01 X 123179172 123179178 GTCTGAC CTCTG STAG2 Frame_Shift_Del p.L207Ffs*31 0.51 TCGA-FD-A3SL-01 X 141290659 141290659 G A MAGEC2 Missense_Mutation p.S372F 0.64 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3SL-01 X 142718330 142718330 G A SLITRK4 Silent p.L199L 0.57 TCGA-FD-A3SL-01 X 24024257 24024257 T C KLHL15 Missense_Mutation p.D185G 0.05 tolerated(0.19) benign(0.138) TCGA-FD-A3SL-01 X 3241401 3241401 G C MXRA5 Missense_Mutation p.N775K 0.61 tolerated(0.19) benign(0.048) TCGA-FD-A3SL-01 X 73961258 73961258 G C KIAA2022 Missense_Mutation p.P1045R 0.63 deleterious(0) probably_damaging(1) TCGA-FD-A3SL-01 X 75649899 75649899 C T MAGEE1 Missense_Mutation p.R526C 0.82 deleterious(0) probably_damaging(0.93) TCGA-FD-A3SM-01 10 101460767 101460767 G A ENTPD7 Missense_Mutation p.R458K 0.34 deleterious(0.02) possibly_damaging(0.51) TCGA-FD-A3SM-01 10 115609492 115609492 G A DCLRE1A Missense_Mutation p.L458F 0.31 tolerated(0.27) possibly_damaging(0.794) TCGA-FD-A3SM-01 10 115610376 115610376 G C DCLRE1A Nonsense_Mutation p.S163* 0.34 TCGA-FD-A3SM-01 10 134059433 134059433 G A STK32C Missense_Mutation p.R97W 0.28 deleterious(0) probably_damaging(0.989) TCGA-FD-A3SM-01 10 26558051 26558051 G T GAD2 Silent p.G308G 0.28 TCGA-FD-A3SM-01 10 28196616 28196616 G C ARMC4 Silent p.L862L 0.35 TCGA-FD-A3SM-01 10 5144774 5144774 C T AKR1C3 Nonsense_Mutation p.Q260* 0.19 TCGA-FD-A3SM-01 10 61835134 61835134 T A ANK3 Silent p.A1835A 0.25 TCGA-FD-A3SM-01 10 73572328 73572328 G C CDH23 Missense_Mutation p.E918Q 0.35 deleterious_low_confidence(0.01) benign(0.25) TCGA-FD-A3SM-01 11 116741051 116741051 G A SIK3 Nonsense_Mutation p.Q544* 0.33 TCGA-FD-A3SM-01 11 116741052 116741052 C A SIK3 Silent p.V543V 0.35 TCGA-FD-A3SM-01 11 123886665 123886665 G A OR10G4 Silent p.P128P 0.27 TCGA-FD-A3SM-01 11 134181051 134181051 C G GLB1L3 Missense_Mutation p.S425C 0.36 deleterious(0.01) benign(0.353) TCGA-FD-A3SM-01 11 18252995 18252995 G A SAA4 3'UTR 0.37 TCGA-FD-A3SM-01 11 376347 376347 G A B4GALNT4 Silent p.P431P 0.20 TCGA-FD-A3SM-01 11 46398102 46398102 C T DGKZ Silent p.I918I 0.31 TCGA-FD-A3SM-01 11 5142584 5142584 A T OR52A4 RNA 0.25 TCGA-FD-A3SM-01 11 55406520 55406520 G C OR4P4 Missense_Mutation p.E229D 0.32 deleterious(0.02) benign(0.151) TCGA-FD-A3SM-01 11 55761768 55761768 A G OR5F1 Missense_Mutation p.C112R 0.27 deleterious(0) possibly_damaging(0.873) TCGA-FD-A3SM-01 11 57003305 57003305 G A APLNR 3'UTR 0.27 TCGA-FD-A3SM-01 11 60620311 60620311 G A PTGDR2 Silent p.F295F 0.25 TCGA-FD-A3SM-01 11 64033997 64033997 C T PLCB3 Silent p.I1129I 0.34 TCGA-FD-A3SM-01 11 65831159 65831159 C G SF3B2 Silent p.L763L 0.35 TCGA-FD-A3SM-01 11 6592276 6592276 G A DNHD1 Missense_Mutation p.G4512S 0.30 probably_damaging(0.985) TCGA-FD-A3SM-01 11 67353985 67353985 C G GSTP1 Silent p.L190L 0.35 TCGA-FD-A3SM-01 11 67353995 67353995 C T GSTP1 Silent p.L194L 0.38 TCGA-FD-A3SM-01 11 67934376 67934376 G A SUV420H1 Intron 0.50 TCGA-FD-A3SM-01 11 72292403 72292403 G A PDE2A Silent p.L681L 0.34 TCGA-FD-A3SM-01 11 74303737 74303737 G A POLD3 Missense_Mutation p.E12K 0.45 deleterious(0.02) benign(0.121) TCGA-FD-A3SM-01 11 92531056 92531056 G A FAT3 Missense_Mutation p.C1626Y 0.40 benign(0.063) TCGA-FD-A3SM-01 12 100751235 100751235 G C SLC17A8 Missense_Mutation p.K22N 0.28 deleterious(0.01) benign(0.023) TCGA-FD-A3SM-01 12 102576369 102576369 A T PARPBP Missense_Mutation p.E409D 0.39 tolerated(0.15) probably_damaging(0.948) TCGA-FD-A3SM-01 12 110811866 110811866 G C ANAPC7 3'UTR 0.24 TCGA-FD-A3SM-01 12 120208662 120208662 C T CIT Missense_Mutation p.R712H 0.28 deleterious(0.04) possibly_damaging(0.904) TCGA-FD-A3SM-01 12 120599681 120599681 C T GCN1L1 Intron 0.31 TCGA-FD-A3SM-01 12 29498396 29498396 G A ERGIC2 Nonsense_Mutation p.Q269* 0.31 TCGA-FD-A3SM-01 12 30802107 30802107 G A IPO8 Silent p.V744V 0.31 TCGA-FD-A3SM-01 12 31540716 31540716 G T DENND5B Missense_Mutation p.R1216S 0.32 deleterious(0.02) benign(0.44) TCGA-FD-A3SM-01 12 49427126 49427126 G A KMT2D Nonsense_Mutation p.Q3788* 0.45 TCGA-FD-A3SM-01 12 50050233 50050233 C T FMNL3 Missense_Mutation p.R280Q 0.23 deleterious(0.04) benign(0.362) TCGA-FD-A3SM-01 12 6806635 6806635 C T PIANP Missense_Mutation p.R114Q 0.42 tolerated_low_confidence(0.24) benign(0.417) TCGA-FD-A3SM-01 12 81111214 81111214 C G MYF5 Silent p.L124L 0.38 TCGA-FD-A3SM-01 13 113862866 113862866 C A CUL4A 5'Flank 0.42 TCGA-FD-A3SM-01 13 31037474 31037474 C G HMGB1 Missense_Mutation p.E56Q 0.46 deleterious(0.01) probably_damaging(0.916) TCGA-FD-A3SM-01 13 49957036 49957037 - T CAB39L Frame_Shift_Ins p.M4Nfs*5 0.20 TCGA-FD-A3SM-01 14 101349412 101349412 C G RTL1 Missense_Mutation p.D572H 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SM-01 14 105413526 105413526 C A AHNAK2 Missense_Mutation p.K2754N 0.36 probably_damaging(0.991) TCGA-FD-A3SM-01 14 23397792 23397792 G T PRMT5 Missense_Mutation p.P48Q 0.22 deleterious(0) probably_damaging(0.98) TCGA-FD-A3SM-01 14 23398605 23398605 G A PRMT5 5'UTR 0.39 TCGA-FD-A3SM-01 14 24543758 24543758 G C CPNE6 Missense_Mutation p.D173H 0.26 deleterious(0) probably_damaging(1) TCGA-FD-A3SM-01 14 36121033 36121033 G A RALGAPA1 Missense_Mutation p.S1379L 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-FD-A3SM-01 14 38061263 38061263 G - FOXA1 Frame_Shift_Del p.Y243Tfs*78 0.38 TCGA-FD-A3SM-01 14 45478126 45478126 C G FAM179B Missense_Mutation p.S972C 0.31 deleterious(0.02) possibly_damaging(0.615) TCGA-FD-A3SM-01 14 72125097 72125097 G A SIPA1L1 Missense_Mutation p.E681K 0.37 deleterious(0) possibly_damaging(0.589) TCGA-FD-A3SM-01 14 75017811 75017811 G A LTBP2 Nonsense_Mutation p.R548* 0.27 TCGA-FD-A3SM-01 14 92471361 92471361 G C TRIP11 Missense_Mutation p.Q987E 0.29 tolerated(0.11) benign(0.108) TCGA-FD-A3SM-01 15 35083368 35083368 C G ACTC1 Missense_Mutation p.D313H 0.34 deleterious_low_confidence(0.02) probably_damaging(0.942) TCGA-FD-A3SM-01 15 40864067 40864067 G A RPUSD2 Missense_Mutation p.E291K 0.30 tolerated(0.95) benign(0.085) TCGA-FD-A3SM-01 15 44778881 44778881 C T CTDSPL2 Missense_Mutation p.S153L 0.22 deleterious(0) possibly_damaging(0.576) TCGA-FD-A3SM-01 15 52402123 52402123 C A BCL2L10 Missense_Mutation p.W179C 0.37 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SM-01 15 57545488 57545488 G C TCF12 Missense_Mutation p.R430T 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SM-01 16 1712505 1712505 C G CRAMP1L Missense_Mutation p.P810A 0.34 tolerated(0.06) possibly_damaging(0.839) TCGA-FD-A3SM-01 16 24800967 24800967 C T TNRC6A Missense_Mutation p.S335F 0.43 deleterious(0.03) benign(0.394) TCGA-FD-A3SM-01 16 28601977 28601977 G C CCDC101 Missense_Mutation p.E198Q 0.35 deleterious(0.01) possibly_damaging(0.604) TCGA-FD-A3SM-01 16 3819201 3819201 C T CREBBP Missense_Mutation p.E1012K 0.37 unknown(0) TCGA-FD-A3SM-01 16 5040888 5040888 G A SEC14L5 Missense_Mutation p.V156I 0.40 tolerated(1) benign(0.006) TCGA-FD-A3SM-01 16 65032529 65032529 A G CDH11 Silent p.N153N 0.34 TCGA-FD-A3SM-01 16 66432402 66432402 G A CDH5 Missense_Mutation p.R510Q 0.30 tolerated(0.83) benign(0.001) TCGA-FD-A3SM-01 16 67696116 67696116 G A PARD6A Missense_Mutation p.A203T 0.34 deleterious(0) probably_damaging(1) TCGA-FD-A3SM-01 16 69693744 69693744 C G NFAT5 Missense_Mutation p.I437M 0.43 possibly_damaging(0.817) TCGA-FD-A3SM-01 16 70934909 70934909 C A HYDIN Nonsense_Mutation p.E3016* 0.12 TCGA-FD-A3SM-01 16 89779125 89779125 C T VPS9D1 Splice_Site p.X144_splice 0.25 TCGA-FD-A3SM-01 16 89845229 89845229 C T FANCA Silent p.A602A 0.34 TCGA-FD-A3SM-01 16 89858462 89858462 C T FANCA Silent p.L366L 0.22 TCGA-FD-A3SM-01 17 11607583 11607583 G C DNAH9 Missense_Mutation p.E1739Q 0.32 probably_damaging(0.971) TCGA-FD-A3SM-01 17 18221435 18221435 C A SMCR8 Missense_Mutation p.Q778K 0.33 tolerated(0.08) probably_damaging(0.991) TCGA-FD-A3SM-01 17 30807212 30807212 C T PSMD11 Missense_Mutation p.H375Y 0.38 tolerated(1) benign(0.004) TCGA-FD-A3SM-01 17 34079687 34079687 C T GAS2L2 Silent p.T61T 0.32 TCGA-FD-A3SM-01 17 35614640 35614640 C T ACACA Missense_Mutation p.R604K 0.26 deleterious(0) probably_damaging(0.97) TCGA-FD-A3SM-01 17 4269622 4269622 G A UBE2G1 5'UTR 0.23 TCGA-FD-A3SM-01 17 617947 617947 C G VPS53 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3SM-01 17 65104787 65104787 G A HELZ Silent p.F1515F 0.37 TCGA-FD-A3SM-01 17 6979314 6979314 G A CLEC10A Silent p.L170L 0.33 TCGA-FD-A3SM-01 17 6980295 6980295 G A CLEC10A Nonsense_Mutation p.Q66* 0.40 TCGA-FD-A3SM-01 17 73491426 73491426 C T KIAA0195 Silent p.I930I 0.24 TCGA-FD-A3SM-01 17 74005847 74005847 C T EVPL Missense_Mutation p.G1147R 0.35 tolerated(0.27) benign(0.093) TCGA-FD-A3SM-01 17 7984221 7984221 G A ALOX12B Missense_Mutation p.R170C 0.38 deleterious(0.02) possibly_damaging(0.704) TCGA-FD-A3SM-01 18 13068356 13068356 A G CEP192 Splice_Site p.X1587_splice 0.40 TCGA-FD-A3SM-01 18 2608705 2608705 G C NDC80 Missense_Mutation p.E522Q 0.39 deleterious(0.03) probably_damaging(0.98) TCGA-FD-A3SM-01 18 29437531 29437531 C T TRAPPC8 Missense_Mutation p.E1054K 0.33 deleterious(0) possibly_damaging(0.897) TCGA-FD-A3SM-01 18 3164366 3164366 G - MYOM1 Frame_Shift_Del p.H471Ifs*46 0.36 TCGA-FD-A3SM-01 18 45372078 45372078 T G SMAD2 Missense_Mutation p.Q364P 0.43 tolerated(0.12) benign(0.246) TCGA-FD-A3SM-01 18 47379927 47379927 C T MYO5B Silent p.E1371E 0.29 TCGA-FD-A3SM-01 18 59824982 59824982 G T PIGN Missense_Mutation p.S94Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SM-01 18 61328322 61328322 T A SERPINB3 Missense_Mutation p.L43F 0.29 deleterious(0.03) benign(0.205) TCGA-FD-A3SM-01 18 74616410 74616410 A G ZNF236 Missense_Mutation p.R655G 0.44 deleterious(0) possibly_damaging(0.77) TCGA-FD-A3SM-01 18 74616411 74616411 G A ZNF236 Missense_Mutation p.R655K 0.45 tolerated(0.13) benign(0.049) TCGA-FD-A3SM-01 18 9954260 9954260 A G VAPA 3'UTR 0.44 TCGA-FD-A3SM-01 19 10689595 10689595 G C AP1M2 Silent p.S287S 0.14 TCGA-FD-A3SM-01 19 11168977 11168977 C T SMARCA4 Nonsense_Mutation p.R1491* 0.30 TCGA-FD-A3SM-01 19 18650429 18650429 C G FKBP8 Missense_Mutation p.E132Q 0.45 deleterious(0.04) benign(0.228) TCGA-FD-A3SM-01 19 18650529 18650529 C T FKBP8 Silent p.G98G 0.42 TCGA-FD-A3SM-01 19 19136463 19136463 G A SUGP2 Nonsense_Mutation p.Q232* 0.49 TCGA-FD-A3SM-01 19 20118011 20118011 C A ZNF682 Silent p.L100L 0.64 TCGA-FD-A3SM-01 19 33096819 33096819 C G ANKRD27 Missense_Mutation p.K805N 0.49 tolerated(0.05) possibly_damaging(0.728) TCGA-FD-A3SM-01 19 34868692 34868692 G A GPI Missense_Mutation p.R191H 0.40 tolerated_low_confidence(0.19) benign(0.015) TCGA-FD-A3SM-01 19 39798949 39798949 G C LRFN1 Missense_Mutation p.S547W 0.22 deleterious(0) probably_damaging(1) TCGA-FD-A3SM-01 19 39804928 39804928 C T LRFN1 Missense_Mutation p.R350Q 0.30 deleterious(0) possibly_damaging(0.58) TCGA-FD-A3SM-01 19 43372352 43372352 G A PSG1 Missense_Mutation p.R382C 0.30 tolerated(0.19) benign(0.371) TCGA-FD-A3SM-01 19 44680638 44680638 C G ZNF226 Missense_Mutation p.S408C 0.41 tolerated(0.12) probably_damaging(0.996) TCGA-FD-A3SM-01 19 45418151 45418151 G A APOC1 Translation_Start_Site p.M1? 0.23 deleterious(0) benign(0.38) TCGA-FD-A3SM-01 19 51021654 51021654 G A LRRC4B Missense_Mutation p.T439M 0.38 deleterious(0) probably_damaging(0.984) TCGA-FD-A3SM-01 19 51329142 51329142 G A KLK15 Silent p.D227D 0.36 TCGA-FD-A3SM-01 19 5222225 5222225 G A PTPRS Missense_Mutation p.P1037L 0.07 deleterious(0.01) benign(0.018) TCGA-FD-A3SM-01 19 54647809 54647809 G T CNOT3 Missense_Mutation p.G109V 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3SM-01 19 55649415 55649415 C T TNNT1 Missense_Mutation p.E139K 0.35 deleterious(0) possibly_damaging(0.643) TCGA-FD-A3SM-01 1 109732234 109732234 C T KIAA1324 Missense_Mutation p.H457Y 0.41 tolerated(0.63) benign(0.001) TCGA-FD-A3SM-01 1 112308378 112308378 G C DDX20 Silent p.L444L 0.32 TCGA-FD-A3SM-01 1 11561856 11561856 G A PTCHD2 Silent p.T269T 0.35 TCGA-FD-A3SM-01 1 147090999 147090999 G C BCL9 Missense_Mutation p.E346D 0.30 tolerated(0.47) probably_damaging(0.952) TCGA-FD-A3SM-01 1 154245817 154245817 G A HAX1 Missense_Mutation p.R20K 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A3SM-01 1 155156701 155156701 C G TRIM46 3'UTR 0.47 TCGA-FD-A3SM-01 1 155295093 155295093 C G RUSC1 Intron 0.50 TCGA-FD-A3SM-01 1 159174617 159174617 T C DARC 5'Flank 0.15 TCGA-FD-A3SM-01 1 165697186 165697186 C G TMCO1 3'UTR 0.24 TCGA-FD-A3SM-01 1 169390861 169390861 C G CCDC181 Missense_Mutation p.E270Q 0.22 deleterious(0.04) probably_damaging(0.969) TCGA-FD-A3SM-01 1 171753057 171753057 C T METTL13 Missense_Mutation p.P111S 0.21 tolerated(0.07) benign(0.06) TCGA-FD-A3SM-01 1 173930937 173930937 C G RC3H1 Missense_Mutation p.E710Q 0.23 deleterious(0.02) benign(0.026) TCGA-FD-A3SM-01 1 183096408 183096408 G A LAMC1 Missense_Mutation p.D998N 0.25 tolerated(0.97) benign(0.047) TCGA-FD-A3SM-01 1 185130013 185130013 C G SWT1 Missense_Mutation p.Q14E 0.24 deleterious_low_confidence(0.03) benign(0.08) TCGA-FD-A3SM-01 1 202931536 202931536 C G CYB5R1 3'UTR 0.27 TCGA-FD-A3SM-01 1 203192777 203192777 A T CHIT1 Missense_Mutation p.M109K 0.23 deleterious(0) possibly_damaging(0.622) TCGA-FD-A3SM-01 1 204125342 204125342 G A REN Silent p.L308L 0.22 TCGA-FD-A3SM-01 1 223116319 223116319 C T DISP1 Missense_Mutation p.P52S 0.22 tolerated_low_confidence(0.13) benign(0.007) TCGA-FD-A3SM-01 1 228288840 228288840 C T C1orf35 Missense_Mutation p.E262K 0.27 deleterious_low_confidence(0.01) benign(0.001) TCGA-FD-A3SM-01 1 228556048 228556048 C T OBSCN Silent p.V7523V 0.31 TCGA-FD-A3SM-01 1 231473425 231473425 C G EXOC8 Missense_Mutation p.E23Q 0.24 tolerated(0.09) benign(0.004) TCGA-FD-A3SM-01 1 24463780 24463780 C - IL22RA1 Frame_Shift_Del p.V66Wfs*16 0.23 TCGA-FD-A3SM-01 1 54683954 54683954 C G MRPL37 3'UTR 0.31 TCGA-FD-A3SM-01 1 6639125 6639125 C G TAS1R1 Missense_Mutation p.F669L 0.32 tolerated(1) benign(0.009) TCGA-FD-A3SM-01 1 6639332 6639332 C T TAS1R1 Silent p.L738L 0.27 TCGA-FD-A3SM-01 1 6639338 6639338 C T TAS1R1 Silent p.I740I 0.24 TCGA-FD-A3SM-01 1 75609605 75609605 G A LHX8 Missense_Mutation p.R229Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A3SM-01 1 865617 865617 C G SAMD11 Missense_Mutation p.S52C 0.22 deleterious(0) possibly_damaging(0.832) TCGA-FD-A3SM-01 1 86842058 86842058 A G ODF2L Missense_Mutation p.M223T 0.31 tolerated(0.4) benign(0.004) TCGA-FD-A3SM-01 20 43723922 43723922 G A KCNS1 Silent p.F390F 0.25 TCGA-FD-A3SM-01 20 55088466 55088466 G A RTFDC1 Silent p.L191L 0.18 TCGA-FD-A3SM-01 20 55206428 55206428 G A TFAP2C Silent p.S72S 0.30 TCGA-FD-A3SM-01 20 57268967 57268967 C G NPEPL1 Missense_Mutation p.R109G 0.32 tolerated(0.12) benign(0.01) TCGA-FD-A3SM-01 20 60794805 60794805 G C HRH3 Silent p.L74L 0.29 TCGA-FD-A3SM-01 21 43298877 43298877 G A PRDM15 Missense_Mutation p.R114W 0.67 tolerated_low_confidence(0.11) benign(0.005) TCGA-FD-A3SM-01 22 18070755 18070755 G A SLC25A18 Missense_Mutation p.E214K 0.37 tolerated(0.79) benign(0.183) TCGA-FD-A3SM-01 22 29091193 29091193 G C CHEK2 Missense_Mutation p.Q476E 0.27 tolerated(0.67) benign(0.001) TCGA-FD-A3SM-01 22 29091207 29091207 G A CHEK2 Missense_Mutation p.S471F 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-FD-A3SM-01 22 41556722 41556722 C G EP300 Missense_Mutation p.Q1223E 0.38 possibly_damaging(0.573) TCGA-FD-A3SM-01 22 50216812 50216812 C T BRD1 Missense_Mutation p.C385Y 0.37 deleterious(0) probably_damaging(1) TCGA-FD-A3SM-01 22 50470355 50470355 G A TTLL8 Silent p.H505H 0.39 TCGA-FD-A3SM-01 22 50717351 50717351 C T PLXNB2 Silent p.K1493K 0.24 TCGA-FD-A3SM-01 2 120097541 120097541 G A C2orf76 5'UTR 0.25 TCGA-FD-A3SM-01 2 136562346 136562346 G T LCT Silent p.I1485I 0.30 TCGA-FD-A3SM-01 2 15753407 15753407 G C DDX1 Missense_Mutation p.G339A 0.21 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SM-01 2 170371102 170371102 G A KLHL41 Missense_Mutation p.E377K 0.43 tolerated(0.08) benign(0.024) TCGA-FD-A3SM-01 2 178098799 178098799 T A NFE2L2 Missense_Mutation p.E82D 0.38 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SM-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.30 deleterious(0) probably_damaging(1) TCGA-FD-A3SM-01 2 233744322 233744324 CTC - NGEF In_Frame_Del p.E670del 0.39 TCGA-FD-A3SM-01 2 241500413 241500413 G C DUSP28 Missense_Mutation p.K104N 0.24 tolerated(0.17) probably_damaging(0.998) TCGA-FD-A3SM-01 2 24522785 24522785 C G ITSN2 Missense_Mutation p.R446T 0.18 deleterious(0) unknown(0) TCGA-FD-A3SM-01 2 24522905 24522905 C T ITSN2 Missense_Mutation p.R406Q 0.21 deleterious(0) unknown(0) TCGA-FD-A3SM-01 2 24522915 24522915 C T ITSN2 Missense_Mutation p.E403K 0.22 deleterious(0.01) unknown(0) TCGA-FD-A3SM-01 2 24523032 24523032 C G ITSN2 Missense_Mutation p.E364Q 0.42 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SM-01 2 24930608 24930608 G T NCOA1 Nonsense_Mutation p.E757* 0.32 TCGA-FD-A3SM-01 2 27746223 27746223 G C GCKR Missense_Mutation p.E599Q 0.21 deleterious(0.05) possibly_damaging(0.806) TCGA-FD-A3SM-01 2 27746258 27746258 G C GCKR Missense_Mutation p.Q610H 0.17 tolerated_low_confidence(0.09) benign(0.24) TCGA-FD-A3SM-01 2 27884012 27884012 C T SUPT7L Silent p.Q86Q 0.25 TCGA-FD-A3SM-01 2 30965216 30965216 G A CAPN13 Silent p.S485S 0.36 TCGA-FD-A3SM-01 2 64141357 64141357 C G VPS54 Missense_Mutation p.V765L 0.39 tolerated(0.37) benign(0.02) TCGA-FD-A3SM-01 2 79312402 79312402 C G REG1B Missense_Mutation p.K147N 0.31 tolerated(0.14) possibly_damaging(0.728) TCGA-FD-A3SM-01 2 95766234 95766234 T A MRPS5 Nonsense_Mutation p.K306* 0.31 TCGA-FD-A3SM-01 3 11596385 11596385 G C ATG7 3'UTR 0.43 TCGA-FD-A3SM-01 3 121491473 121491473 C G IQCB1 Missense_Mutation p.E500Q 0.33 tolerated(0.18) possibly_damaging(0.71) TCGA-FD-A3SM-01 3 122598123 122598123 C T DIRC2 Silent p.F445F 0.35 TCGA-FD-A3SM-01 3 129185821 129185821 C G IFT122 Missense_Mutation p.L269V 0.34 tolerated(0.5) benign(0.264) TCGA-FD-A3SM-01 3 132182552 132182552 G C DNAJC13 Missense_Mutation p.E595Q 0.36 deleterious(0.02) benign(0.081) TCGA-FD-A3SM-01 3 142144273 142144273 C T XRN1 Missense_Mutation p.E172K 0.74 deleterious(0) possibly_damaging(0.507) TCGA-FD-A3SM-01 3 142525111 142525111 A G TRPC1 3'UTR 0.39 TCGA-FD-A3SM-01 3 174577123 174577123 C T NAALADL2 5'UTR 0.38 TCGA-FD-A3SM-01 3 196236536 196236536 C G SMCO1 Missense_Mutation p.D19H 0.34 deleterious(0.01) possibly_damaging(0.621) TCGA-FD-A3SM-01 3 37056007 37056007 G C MLH1 Missense_Mutation p.K254N 0.44 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SM-01 3 48622525 48622525 G C COL7A1 Missense_Mutation p.P1307A 0.27 unknown(0) TCGA-FD-A3SM-01 3 48622544 48622544 G A COL7A1 Silent p.F1300F 0.23 TCGA-FD-A3SM-01 3 52282393 52282393 C G PPM1M Missense_Mutation p.L68V 0.27 deleterious(0.03) possibly_damaging(0.803) TCGA-FD-A3SM-01 3 52283630 52283630 C T PPM1M Intron 0.30 TCGA-FD-A3SM-01 3 56680888 56680888 T C FAM208A Missense_Mutation p.N626S 0.24 tolerated(0.07) possibly_damaging(0.544) TCGA-FD-A3SM-01 3 57543222 57543222 G A PDE12 Silent p.G372G 0.18 TCGA-FD-A3SM-01 3 57619051 57619051 G C DENND6A Missense_Mutation p.Q432E 0.29 deleterious(0.01) benign(0.197) TCGA-FD-A3SM-01 3 64009039 64009039 G C PSMD6 Missense_Mutation p.I19M 0.40 deleterious(0.01) benign(0.368) TCGA-FD-A3SM-01 4 101109268 101109268 C T DDIT4L Missense_Mutation p.E50K 0.37 deleterious(0.01) possibly_damaging(0.505) TCGA-FD-A3SM-01 4 134072260 134072260 C G PCDH10 Missense_Mutation p.P322R 0.35 tolerated(0.52) benign(0.139) TCGA-FD-A3SM-01 4 154625251 154625251 C G TLR2 Missense_Mutation p.H398D 0.28 tolerated(0.2) possibly_damaging(0.829) TCGA-FD-A3SM-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.30 deleterious(0.01) possibly_damaging(0.594) TCGA-FD-A3SM-01 4 5754566 5754566 G A EVC Missense_Mutation p.A368T 0.36 tolerated(0.5) benign(0.003) TCGA-FD-A3SM-01 4 663929 663929 C T PDE6B 3'UTR 0.28 TCGA-FD-A3SM-01 4 73185578 73185578 T C ADAMTS3 Missense_Mutation p.H402R 0.40 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SM-01 4 88053553 88053553 A G AFF1 Missense_Mutation p.I1102V 0.41 tolerated(1) unknown(0) TCGA-FD-A3SM-01 5 10402684 10402684 C G MARCH6 Missense_Mutation p.L388V 0.32 tolerated(0.11) possibly_damaging(0.467) TCGA-FD-A3SM-01 5 106722987 106722987 C A EFNA5 Missense_Mutation p.D172Y 0.58 deleterious(0.01) possibly_damaging(0.87) TCGA-FD-A3SM-01 5 109051929 109051929 C G MAN2A1 Missense_Mutation p.Q167E 0.46 tolerated(0.17) probably_damaging(0.998) TCGA-FD-A3SM-01 5 145557190 145557190 C G LARS Missense_Mutation p.K15N 0.57 tolerated(0.1) benign(0.011) TCGA-FD-A3SM-01 5 167984458 167984458 A G PANK3 3'UTR 0.19 TCGA-FD-A3SM-01 5 178392337 178392337 G T ZNF454 Missense_Mutation p.C311F 0.49 tolerated(0.7) possibly_damaging(0.854) TCGA-FD-A3SM-01 5 79797732 79797732 G C FAM151B Silent p.L49L 0.54 TCGA-FD-A3SM-01 6 100896129 100896129 C G SIM1 Splice_Site p.X248_splice 0.14 TCGA-FD-A3SM-01 6 112476059 112476059 C G LAMA4 Missense_Mutation p.E684Q 0.29 tolerated(0.58) benign(0) TCGA-FD-A3SM-01 6 133073771 133073771 G T VNN2 Missense_Mutation p.P219T 0.28 deleterious(0.01) probably_damaging(1) TCGA-FD-A3SM-01 6 159262845 159262845 G A OSTCP1 RNA 0.28 TCGA-FD-A3SM-01 6 169623541 169623541 C T THBS2 Missense_Mutation p.D935N 0.33 deleterious(0.01) probably_damaging(1) TCGA-FD-A3SM-01 6 26377428 26377428 A T BTN3A2 3'UTR 0.45 TCGA-FD-A3SM-01 6 31895930 31895930 C T CFB Missense_Mutation p.A82V 0.17 deleterious(0.02) benign(0.012) TCGA-FD-A3SM-01 6 34824635 34824635 C T UHRF1BP1 Nonsense_Mutation p.Q454* 0.32 TCGA-FD-A3SM-01 6 36652009 36652010 - GG CDKN1A Frame_Shift_Ins p.A45Gfs*104 0.23 TCGA-FD-A3SM-01 6 39828707 39828707 G A DAAM2 Missense_Mutation p.E58K 0.38 deleterious(0) possibly_damaging(0.904) TCGA-FD-A3SM-01 6 40996310 40996318 GGGGCTGCG CC UNC5CL Frame_Shift_Del p.R451Gfs*23 0.18 TCGA-FD-A3SM-01 6 56492874 56492874 C T DST Missense_Mutation p.E984K 0.32 probably_damaging(0.998) TCGA-FD-A3SM-01 6 73751677 73751677 G A KCNQ5 Missense_Mutation p.V170I 0.32 tolerated(0.13) probably_damaging(0.92) TCGA-FD-A3SM-01 6 90402857 90402857 G A MDN1 Nonsense_Mutation p.Q3298* 0.24 TCGA-FD-A3SM-01 6 97626386 97626386 G A MMS22L Missense_Mutation p.S871L 0.24 tolerated(0.09) benign(0.006) TCGA-FD-A3SM-01 6 99823896 99823896 C G COQ3 Missense_Mutation p.D217H 0.24 deleterious(0.03) probably_damaging(0.989) TCGA-FD-A3SM-01 7 105732222 105732222 T C SYPL1 3'UTR 0.28 TCGA-FD-A3SM-01 7 138968238 138968238 C G UBN2 Missense_Mutation p.Q863E 0.38 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-FD-A3SM-01 7 149152725 149152725 T G ZNF777 Missense_Mutation p.H130P 0.33 deleterious_low_confidence(0.01) benign(0.001) TCGA-FD-A3SM-01 7 150699002 150699002 G C NOS3 Missense_Mutation p.Q532H 0.31 deleterious(0.02) benign(0.26) TCGA-FD-A3SM-01 7 151845284 151845288 GAAGA - KMT2C Frame_Shift_Del p.L4575Pfs*5 0.37 TCGA-FD-A3SM-01 7 151877140 151877140 C - KMT2C Frame_Shift_Del p.S2408Hfs*44 0.29 TCGA-FD-A3SM-01 7 4830402 4830402 C T AP5Z1 Silent p.F679F 0.42 TCGA-FD-A3SM-01 7 48312697 48312697 A G ABCA13 Missense_Mutation p.H1145R 0.27 benign(0.086) TCGA-FD-A3SM-01 7 5942310 5942310 C G CCZ1 Missense_Mutation p.L153V 0.36 tolerated(0.3) benign(0.045) TCGA-FD-A3SM-01 7 65548157 65548157 G C ASL Missense_Mutation p.E148Q 0.40 tolerated(0.06) benign(0.173) TCGA-FD-A3SM-01 7 86493722 86493722 C T GRM3 3'UTR 0.40 TCGA-FD-A3SM-01 7 883137 883137 C G SUN1 Missense_Mutation p.S213C 0.29 deleterious(0.01) possibly_damaging(0.65) TCGA-FD-A3SM-01 7 883181 883181 C G SUN1 Intron 0.35 TCGA-FD-A3SM-01 7 883282 883282 G A SUN1 Intron 0.21 TCGA-FD-A3SM-01 7 99367796 99367796 C T CYP3A4 Silent p.K127K 0.36 TCGA-FD-A3SM-01 8 103357737 103357737 G A UBR5 Missense_Mutation p.S258F 0.33 deleterious(0.01) probably_damaging(0.915) TCGA-FD-A3SM-01 8 113529420 113529420 G A CSMD3 Silent p.V1533V 0.35 TCGA-FD-A3SM-01 8 122626714 122626714 C G HAS2 Missense_Mutation p.V432L 0.04 tolerated(0.77) benign(0.131) TCGA-FD-A3SM-01 8 145540687 145540687 C G DGAT1 Missense_Mutation p.E416Q 0.33 deleterious(0) probably_damaging(0.951) TCGA-FD-A3SM-01 8 22005745 22005745 C A LGI3 Missense_Mutation p.Q525H 0.46 tolerated(0.1) possibly_damaging(0.69) TCGA-FD-A3SM-01 8 30557646 30557646 C T GSR Missense_Mutation p.S216N 0.47 deleterious(0.04) benign(0.002) TCGA-FD-A3SM-01 8 39044508 39044508 C T ADAM32 Silent p.D332D 0.76 TCGA-FD-A3SM-01 8 39792565 39792565 G C IDO2 5'UTR 0.61 TCGA-FD-A3SM-01 8 74235043 74235043 G C RDH10 Missense_Mutation p.K300N 0.38 deleterious(0) probably_damaging(0.981) TCGA-FD-A3SM-01 8 82626198 82626198 C T ZFAND1 Silent p.L145L 0.41 TCGA-FD-A3SM-01 8 95392433 95392433 G T RAD54B Silent p.L729L 0.42 TCGA-FD-A3SM-01 8 95392461 95392461 G C RAD54B Nonsense_Mutation p.S720* 0.32 TCGA-FD-A3SM-01 9 130482603 130482603 G T TTC16 Nonsense_Mutation p.E196* 0.57 TCGA-FD-A3SM-01 9 135781236 135781236 C A TSC1 Nonsense_Mutation p.E577* 0.51 TCGA-FD-A3SM-01 9 139250815 139250815 C T GPSM1 Missense_Mutation p.S545L 0.50 tolerated(0.05) probably_damaging(0.999) TCGA-FD-A3SM-01 9 139699184 139699184 C T CCDC183 Intron 0.56 TCGA-FD-A3SM-01 9 14674383 14674383 C T ZDHHC21 Intron 0.52 TCGA-FD-A3SM-01 X 102968912 102968912 C G TMEM31 Missense_Mutation p.L165V 0.78 deleterious_low_confidence(0) benign(0.341) TCGA-FD-A3SM-01 X 123176495 123176495 G A STAG2 Silent p.E154E 0.74 TCGA-FD-A3SM-01 X 129771250 129771250 C G ENOX2 Missense_Mutation p.E451Q 0.64 tolerated(0.18) benign(0.007) TCGA-FD-A3SM-01 X 129771262 129771262 C A ENOX2 Missense_Mutation p.D447Y 0.67 tolerated(0.28) probably_damaging(0.999) TCGA-FD-A3SM-01 X 140336533 140336533 C T SPANXC Missense_Mutation p.E20K 0.63 tolerated(0.57) probably_damaging(0.93) TCGA-FD-A3SM-01 X 56591564 56591564 C G UBQLN2 Missense_Mutation p.P420A 0.65 deleterious(0.01) possibly_damaging(0.9) TCGA-FD-A3SM-01 X 64722819 64722819 G C ZC3H12B Missense_Mutation p.L747F 0.59 deleterious(0.01) probably_damaging(0.92) TCGA-FD-A3SN-01 10 102894051 102894051 G A TLX1 Missense_Mutation p.E230K 0.50 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SN-01 10 103868831 103868831 C T LDB1 Silent p.K320K 0.37 TCGA-FD-A3SN-01 10 103869736 103869736 C T LDB1 Nonsense_Mutation p.W197* 0.32 TCGA-FD-A3SN-01 10 116307492 116307492 C T ABLIM1 Silent p.L239L 0.39 TCGA-FD-A3SN-01 10 120070299 120070299 C A FAM204A 3'UTR 0.23 TCGA-FD-A3SN-01 10 122637962 122637962 C T WDR11 Missense_Mutation p.L552F 0.38 deleterious(0.01) possibly_damaging(0.54) TCGA-FD-A3SN-01 10 123846157 123846157 C T TACC2 Missense_Mutation p.S1381F 0.35 possibly_damaging(0.759) TCGA-FD-A3SN-01 10 127486691 127486691 G A UROS Silent p.L140L 0.37 TCGA-FD-A3SN-01 10 131760444 131760444 C T EBF3 Missense_Mutation p.M134I 0.31 deleterious(0.03) benign(0.017) TCGA-FD-A3SN-01 10 13652044 13652044 G C PRPF18 Missense_Mutation p.L123F 0.26 tolerated(0.58) benign(0.384) TCGA-FD-A3SN-01 10 25312422 25312422 C A THNSL1 Silent p.I90I 0.33 TCGA-FD-A3SN-01 10 25464862 25464862 C G GPR158 Missense_Mutation p.I171M 0.33 deleterious(0) possibly_damaging(0.808) TCGA-FD-A3SN-01 10 27048155 27048155 G A ABI1 Missense_Mutation p.S305L 0.23 tolerated_low_confidence(0.42) benign(0.044) TCGA-FD-A3SN-01 10 27536750 27536750 C T RP11-85G18.6 Intron 0.31 TCGA-FD-A3SN-01 10 30316005 30316005 A G KIAA1462 Silent p.S1024S 0.40 TCGA-FD-A3SN-01 10 3824148 3824148 G A KLF6 Missense_Mutation p.P121S 0.32 tolerated(0.16) probably_damaging(0.986) TCGA-FD-A3SN-01 10 6274939 6274939 C G PFKFB3 3'UTR 0.34 TCGA-FD-A3SN-01 10 71119661 71119661 G A HK1 Missense_Mutation p.D83N 0.38 tolerated(0.13) possibly_damaging(0.562) TCGA-FD-A3SN-01 10 72026099 72026099 C T NPFFR1 Missense_Mutation p.G19E 0.19 tolerated(0.27) benign(0.001) TCGA-FD-A3SN-01 10 73553278 73553278 C A CDH23 5'Flank 0.50 TCGA-FD-A3SN-01 10 74684374 74684374 G A OIT3 Missense_Mutation p.V447I 0.28 tolerated(0.69) benign(0.002) TCGA-FD-A3SN-01 10 74899248 74899248 G A ECD Nonsense_Mutation p.Q447* 0.34 TCGA-FD-A3SN-01 10 7844317 7844317 C T ATP5C1 Missense_Mutation p.S241F 0.24 deleterious(0) possibly_damaging(0.749) TCGA-FD-A3SN-01 10 85984111 85984111 C T LRIT2 Silent p.L290L 0.53 TCGA-FD-A3SN-01 10 96012152 96012152 C G PLCE1 Missense_Mutation p.P1059R 0.22 tolerated(0.56) benign(0.239) TCGA-FD-A3SN-01 11 104912200 104912200 T C CARD16 Missense_Mutation p.H174R 0.38 deleterious_low_confidence(0) benign(0.227) TCGA-FD-A3SN-01 11 107427575 107427575 C T ALKBH8 Missense_Mutation p.R95K 0.38 tolerated(1) benign(0) TCGA-FD-A3SN-01 11 108277655 108277655 A G C11orf65 Silent p.F88F 0.43 TCGA-FD-A3SN-01 11 111853158 111853158 G A DIXDC1 Missense_Mutation p.E288K 0.38 tolerated(0.05) possibly_damaging(0.547) TCGA-FD-A3SN-01 11 118965789 118965815 CCTGGGCGATCGTCACGCCGCCCAGCA - H2AFX In_Frame_Del p.L97_G106delinsR 0.26 TCGA-FD-A3SN-01 11 125848278 125848278 C T CDON Missense_Mutation p.G1093S 0.27 tolerated(0.05) benign(0.356) TCGA-FD-A3SN-01 11 128709869 128709869 G A KCNJ1 Silent p.L109L 0.37 TCGA-FD-A3SN-01 11 130066285 130066285 G T ST14 Nonsense_Mutation p.E389* 0.27 TCGA-FD-A3SN-01 11 17542916 17542916 C T USH1C Silent p.E354E 0.05 TCGA-FD-A3SN-01 11 33308756 33308756 C T HIPK3 Nonsense_Mutation p.Q266* 0.06 TCGA-FD-A3SN-01 11 35492234 35492234 G A PAMR1 Silent p.S209S 0.50 TCGA-FD-A3SN-01 11 57076110 57076110 G A TNKS1BP1 Missense_Mutation p.P1359S 0.31 tolerated(0.22) benign(0.151) TCGA-FD-A3SN-01 11 59861476 59861476 C - MS4A2 Frame_Shift_Del p.G194Vfs*29 0.15 TCGA-FD-A3SN-01 11 61672126 61672126 G A RAB3IL1 Missense_Mutation p.S264L 0.23 deleterious(0.05) benign(0.035) TCGA-FD-A3SN-01 11 62342673 62342673 C T TUT1 Missense_Mutation p.D878N 0.37 tolerated(0.26) benign(0.009) TCGA-FD-A3SN-01 11 63398817 63398817 G C ATL3 Missense_Mutation p.R412G 0.40 tolerated(0.15) possibly_damaging(0.459) TCGA-FD-A3SN-01 11 64119604 64119604 C G CCDC88B Silent p.A1034A 0.44 TCGA-FD-A3SN-01 11 67190990 67190990 G C CARNS1 Missense_Mutation p.D591H 0.40 deleterious(0.03) possibly_damaging(0.82) TCGA-FD-A3SN-01 11 70349010 70349010 G A SHANK2 Silent p.V697V 0.12 TCGA-FD-A3SN-01 11 71152464 71152464 G A DHCR7 Silent p.I145I 0.47 TCGA-FD-A3SN-01 11 73078896 73078896 C T ARHGEF17 3'UTR 0.44 TCGA-FD-A3SN-01 11 75298823 75298823 G A MAP6 Missense_Mutation p.P575S 0.36 tolerated_low_confidence(0.26) benign(0.03) TCGA-FD-A3SN-01 11 8017687 8017687 C T EIF3F 3'UTR 0.63 TCGA-FD-A3SN-01 11 8161479 8161479 C T RIC3 Intron 0.50 TCGA-FD-A3SN-01 12 100452766 100452766 C T UHRF1BP1L Silent p.L763L 0.44 TCGA-FD-A3SN-01 12 102107962 102107962 C T CHPT1 Missense_Mutation p.S123F 0.28 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SN-01 12 106633728 106633728 C T CKAP4 Missense_Mutation p.E295K 0.29 deleterious(0.01) possibly_damaging(0.544) TCGA-FD-A3SN-01 12 109530580 109530580 G A ALKBH2 Silent p.F4F 0.32 TCGA-FD-A3SN-01 12 111951193 111951193 G A ATXN2 Missense_Mutation p.S669L 0.36 benign(0.368) TCGA-FD-A3SN-01 12 113515257 113515257 C T DTX1 Silent p.F96F 0.33 TCGA-FD-A3SN-01 12 121735451 121735451 G A CAMKK2 5'UTR 0.35 TCGA-FD-A3SN-01 12 123353041 123353041 C G VPS37B Missense_Mutation p.E118Q 0.22 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 12 12630261 12630261 G C DUSP16 Missense_Mutation p.P502A 0.38 tolerated(0.08) benign(0.008) TCGA-FD-A3SN-01 12 130839176 130839176 C G PIWIL1 Missense_Mutation p.A380G 0.30 deleterious(0) benign(0.319) TCGA-FD-A3SN-01 12 132284096 132284096 G T SFSWAP 3'UTR 0.47 TCGA-FD-A3SN-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.35 TCGA-FD-A3SN-01 12 2944131 2944131 G C NRIP2 Missense_Mutation p.L7V 0.39 tolerated_low_confidence(0.08) benign(0.003) TCGA-FD-A3SN-01 12 29639199 29639199 T G OVCH1 Silent p.G325G 0.38 TCGA-FD-A3SN-01 12 30881858 30881858 C T CAPRIN2 Silent p.Q502Q 0.42 TCGA-FD-A3SN-01 12 46244139 46244139 C T ARID2 Nonsense_Mutation p.Q745* 0.42 TCGA-FD-A3SN-01 12 46244406 46244406 C T ARID2 Nonsense_Mutation p.Q834* 0.35 TCGA-FD-A3SN-01 12 49255809 49255809 C T RND1 Missense_Mutation p.D101N 0.47 deleterious(0.02) benign(0.213) TCGA-FD-A3SN-01 12 50036434 50036434 C T PRPF40B Silent p.F698F 0.40 TCGA-FD-A3SN-01 12 50135933 50135933 C T TMBIM6 Missense_Mutation p.S5F 0.18 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-FD-A3SN-01 12 53607432 53607432 G A RARG Missense_Mutation p.S289F 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 12 53607867 53607867 G C RARG Silent p.L263L 0.32 TCGA-FD-A3SN-01 12 54576210 54576210 G C SMUG1 Silent p.V161V 0.31 TCGA-FD-A3SN-01 12 56490853 56490853 G A ERBB3 Missense_Mutation p.D767N 0.46 tolerated(0.16) possibly_damaging(0.641) TCGA-FD-A3SN-01 12 57637672 57637672 C T STAC3 Missense_Mutation p.E340K 0.20 deleterious(0) possibly_damaging(0.856) TCGA-FD-A3SN-01 12 57870952 57870952 G A ARHGAP9 Missense_Mutation p.P286L 0.33 tolerated(0.44) benign(0) TCGA-FD-A3SN-01 12 6161924 6161924 C T VWF Silent p.V657V 0.27 TCGA-FD-A3SN-01 12 65130795 65130795 G C GNS Missense_Mutation p.Q363E 0.33 tolerated(0.12) benign(0.179) TCGA-FD-A3SN-01 12 72024481 72024481 G C ZFC3H1 Missense_Mutation p.T1208R 0.30 deleterious(0.02) possibly_damaging(0.714) TCGA-FD-A3SN-01 12 7254567 7254567 G A C1RL Silent p.F139F 0.39 TCGA-FD-A3SN-01 12 8200561 8200561 C G FOXJ2 Missense_Mutation p.Q301E 0.38 tolerated(0.27) benign(0.042) TCGA-FD-A3SN-01 12 82752565 82752565 C T METTL25 Missense_Mutation p.S74L 0.38 tolerated(0.28) benign(0.003) TCGA-FD-A3SN-01 12 95397478 95397478 C T NDUFA12 5'UTR 0.40 TCGA-FD-A3SN-01 13 103468829 103468829 G A BIVM-ERCC5 Missense_Mutation p.R149K 0.39 tolerated_low_confidence(0.73) possibly_damaging(0.567) TCGA-FD-A3SN-01 13 109507866 109507866 G A MYO16 Missense_Mutation p.E420K 0.50 deleterious(0.01) probably_damaging(1) TCGA-FD-A3SN-01 13 111357910 111357910 C T CARS2 Missense_Mutation p.C78Y 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 13 52952424 52952424 C G THSD1 Missense_Mutation p.D561H 0.70 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SN-01 13 88328436 88328436 G A SLITRK5 Missense_Mutation p.E265K 0.38 deleterious(0) probably_damaging(0.968) TCGA-FD-A3SN-01 13 92345823 92345823 C G GPC5 Missense_Mutation p.I236M 0.37 deleterious(0.03) probably_damaging(1) TCGA-FD-A3SN-01 13 99532219 99532219 G A DOCK9 Missense_Mutation p.S959L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A3SN-01 14 106452858 106452858 C T IGHV1-2 Nonsense_Mutation p.W55* 0.53 TCGA-FD-A3SN-01 14 106573262 106573262 C T IGHV3-11 Missense_Mutation p.E108K 0.56 deleterious_low_confidence(0.02) benign(0.308) TCGA-FD-A3SN-01 14 21486143 21486143 C T NDRG2 Intron 0.36 TCGA-FD-A3SN-01 14 22205041 22205041 G A TRAV4 Silent p.V35V 0.60 TCGA-FD-A3SN-01 14 22631672 22631672 C T TRAV29DV5 Silent p.F88F 0.32 TCGA-FD-A3SN-01 14 31782285 31782285 C T AL136418.1 3'Flank 0.55 TCGA-FD-A3SN-01 14 32624002 32624002 G A ARHGAP5 Missense_Mutation p.E1453K 0.69 tolerated(0.15) benign(0.23) TCGA-FD-A3SN-01 14 35591189 35591189 C T PPP2R3C 5'UTR 0.38 TCGA-FD-A3SN-01 14 50779600 50779600 G A ATP5S 5'UTR 0.41 TCGA-FD-A3SN-01 14 60591527 60591527 C G PCNXL4 Missense_Mutation p.L646V 0.56 tolerated(0.42) benign(0.001) TCGA-FD-A3SN-01 14 62200933 62200933 C T HIF1A Nonsense_Mutation p.Q344* 0.80 TCGA-FD-A3SN-01 14 64453240 64453240 G A SYNE2 Missense_Mutation p.E740K 0.37 benign(0.059) TCGA-FD-A3SN-01 14 68238913 68238913 G A ZFYVE26 Missense_Mutation p.H1779Y 0.64 tolerated(0.35) benign(0.118) TCGA-FD-A3SN-01 14 73444931 73444931 C T ZFYVE1 Silent p.E477E 0.56 TCGA-FD-A3SN-01 14 74946966 74946966 C T NPC2 3'UTR 0.47 TCGA-FD-A3SN-01 14 75475999 75475999 C T EIF2B2 3'UTR 0.67 TCGA-FD-A3SN-01 14 75747770 75747770 G T FOS Missense_Mutation p.M262I 0.58 tolerated(0.41) benign(0.003) TCGA-FD-A3SN-01 14 76107307 76107307 G A FLVCR2 Missense_Mutation p.M415I 0.41 deleterious(0.02) benign(0.25) TCGA-FD-A3SN-01 14 78325484 78325484 G A ADCK1 Silent p.K95K 0.50 TCGA-FD-A3SN-01 14 88974366 88974366 T C PTPN21 Splice_Site p.X117_splice 0.62 TCGA-FD-A3SN-01 14 91806270 91806270 G A CCDC88C Silent p.L194L 0.75 TCGA-FD-A3SN-01 14 95912274 95912289 CTGTTATGCAGCAGGT - SYNE3 Frame_Shift_Del p.D530Afs*132 0.40 TCGA-FD-A3SN-01 15 101109805 101109805 C G LINS Missense_Mutation p.E638Q 0.63 deleterious(0) probably_damaging(0.978) TCGA-FD-A3SN-01 15 41482260 41482260 C T EXD1 Missense_Mutation p.A253T 0.74 tolerated(0.62) benign(0.086) TCGA-FD-A3SN-01 15 42434263 42434263 G A PLA2G4F Silent p.V823V 0.67 TCGA-FD-A3SN-01 15 44086132 44086132 C T SERF2 Nonsense_Mutation p.Q159* 0.44 TCGA-FD-A3SN-01 15 44876484 44876484 C G SPG11 Missense_Mutation p.E1798D 0.47 deleterious(0) probably_damaging(0.953) TCGA-FD-A3SN-01 15 64445876 64445876 G A SNX22 Missense_Mutation p.D129N 0.54 tolerated(0.36) benign(0.037) TCGA-FD-A3SN-01 15 65759415 65759415 G A DPP8 Silent p.I577I 0.48 TCGA-FD-A3SN-01 15 71185171 71185171 G A LRRC49 5'UTR 0.59 TCGA-FD-A3SN-01 15 72186109 72186109 C T MYO9A Missense_Mutation p.E1685K 0.52 tolerated_low_confidence(0.19) benign(0.05) TCGA-FD-A3SN-01 15 75091647 75091647 G A CSK Missense_Mutation p.E93K 0.39 tolerated(0.07) probably_damaging(0.911) TCGA-FD-A3SN-01 15 79063930 79063930 G A ADAMTS7 Silent p.I791I 0.64 TCGA-FD-A3SN-01 15 89386642 89386642 G A ACAN Missense_Mutation p.E272K 0.52 tolerated(0.81) unknown(0) TCGA-FD-A3SN-01 15 90119460 90119460 G A TICRR Missense_Mutation p.E215K 0.45 deleterious(0) possibly_damaging(0.657) TCGA-FD-A3SN-01 15 90774617 90774617 G A CIB1 Silent p.I106I 0.54 TCGA-FD-A3SN-01 16 14042169 14042169 G C ERCC4 Missense_Mutation p.A906P 0.37 tolerated(0.08) benign(0.265) TCGA-FD-A3SN-01 16 14738279 14738279 C T BFAR Nonsense_Mutation p.Q26* 0.39 TCGA-FD-A3SN-01 16 19619564 19619564 G C C16orf62 Missense_Mutation p.K372N 0.32 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SN-01 16 20837242 20837242 G A AC004381.6 Missense_Mutation p.E265K 0.26 tolerated(0.16) benign(0.063) TCGA-FD-A3SN-01 16 21272618 21272618 C T CRYM Silent p.V279V 0.33 TCGA-FD-A3SN-01 16 21721355 21721355 C T OTOA Silent p.L417L 0.36 TCGA-FD-A3SN-01 16 22826363 22826363 C T HS3ST2 Silent p.G144G 0.35 TCGA-FD-A3SN-01 16 23400346 23400346 G A COG7 Silent p.I736I 0.49 TCGA-FD-A3SN-01 16 27751476 27751476 G A KIAA0556 Missense_Mutation p.D620N 0.29 tolerated(0.09) benign(0.034) TCGA-FD-A3SN-01 16 2812478 2812478 G A SRRM2 Missense_Mutation p.R650K 0.40 unknown(0) TCGA-FD-A3SN-01 16 28374103 28374103 G C NPIPB6 Missense_Mutation p.S14W 0.15 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-FD-A3SN-01 16 28857543 28857543 G A TUFM Silent p.F16F 0.33 TCGA-FD-A3SN-01 16 30012320 30012320 C T INO80E Missense_Mutation p.P119S 0.31 tolerated(0.25) probably_damaging(0.994) TCGA-FD-A3SN-01 16 30440456 30440456 C T DCTPP1 Missense_Mutation p.R45Q 0.29 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SN-01 16 3340089 3340089 C T ZNF263 Missense_Mutation p.S528F 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3SN-01 16 34624141 34624141 C T RP11-488I20.3 RNA 0.33 TCGA-FD-A3SN-01 16 50335123 50335123 C T ADCY7 Missense_Mutation p.R456W 0.44 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A3SN-01 16 53301296 53301296 G A CHD9 Missense_Mutation p.E1471K 0.43 probably_damaging(0.917) TCGA-FD-A3SN-01 16 57157323 57157323 C T CPNE2 Intron 0.27 TCGA-FD-A3SN-01 16 58621779 58621779 G A CNOT1 Nonsense_Mutation p.Q72* 0.36 TCGA-FD-A3SN-01 16 67291253 67291253 G C SLC9A5 Missense_Mutation p.L447F 0.24 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 16 67694244 67694244 A G ACD Silent p.R46R 0.33 TCGA-FD-A3SN-01 16 67702120 67702120 C T C16orf86 Missense_Mutation p.R191W 0.47 deleterious(0) possibly_damaging(0.835) TCGA-FD-A3SN-01 16 69419340 69419340 C T TERF2 Silent p.L101L 0.31 TCGA-FD-A3SN-01 16 69458758 69458758 G A CYB5B Missense_Mutation p.E58K 0.33 deleterious(0) possibly_damaging(0.761) TCGA-FD-A3SN-01 16 69687308 69687308 C T NFAT5 Nonsense_Mutation p.Q328* 0.28 TCGA-FD-A3SN-01 16 71961660 71961660 G C IST1 Missense_Mutation p.D362H 0.35 deleterious(0) probably_damaging(0.928) TCGA-FD-A3SN-01 16 74685896 74685896 C T RFWD3 Missense_Mutation p.D215N 0.34 tolerated(0.13) benign(0.009) TCGA-FD-A3SN-01 16 81739167 81739167 T C CMIP Missense_Mutation p.C719R 0.40 deleterious(0) benign(0.25) TCGA-FD-A3SN-01 16 89261279 89261279 G A CDH15 Missense_Mutation p.A721T 0.27 deleterious(0) possibly_damaging(0.483) TCGA-FD-A3SN-01 17 12860053 12860053 C T ARHGAP44 Silent p.F444F 0.40 TCGA-FD-A3SN-01 17 18874745 18874745 G A FAM83G Missense_Mutation p.T800M 0.55 tolerated_low_confidence(0.4) benign(0.021) TCGA-FD-A3SN-01 17 19581882 19581882 G C SLC47A2 3'UTR 0.40 TCGA-FD-A3SN-01 17 2604800 2604800 C T CLUH Silent p.L215L 0.65 TCGA-FD-A3SN-01 17 29556856 29556866 TTATTGACTGA - NF1 Frame_Shift_Del p.L952Yfs*19 0.49 TCGA-FD-A3SN-01 17 3144083 3144083 G A OR1D4 RNA 0.46 TCGA-FD-A3SN-01 17 37381683 37381683 C T STAC2 Missense_Mutation p.A25T 0.52 tolerated(0.44) benign(0.002) TCGA-FD-A3SN-01 17 37619354 37619354 C T CDK12 Missense_Mutation p.R344W 0.53 unknown(0) TCGA-FD-A3SN-01 17 37864656 37864656 G A ERBB2 Missense_Mutation p.R103Q 0.50 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 17 40557078 40557078 C T PTRF Missense_Mutation p.R267Q 0.62 deleterious(0) probably_damaging(0.947) TCGA-FD-A3SN-01 17 46607197 46607197 G A HOXB1 Silent p.L206L 0.58 TCGA-FD-A3SN-01 17 4892128 4892128 C G INCA1 Missense_Mutation p.E169D 0.66 tolerated(0.09) probably_damaging(0.996) TCGA-FD-A3SN-01 17 5440230 5440230 C A NLRP1 Missense_Mutation p.M967I 0.48 deleterious(0.02) benign(0.007) TCGA-FD-A3SN-01 17 55083551 55083551 G A SCPEP1 Silent p.G438G 0.30 TCGA-FD-A3SN-01 17 56386419 56386419 C T BZRAP1 Missense_Mutation p.R1405Q 0.43 tolerated(0.17) possibly_damaging(0.686) TCGA-FD-A3SN-01 17 56774148 56774148 G A RAD51C Missense_Mutation p.D167N 0.38 deleterious(0.04) benign(0.014) TCGA-FD-A3SN-01 17 57297877 57297877 G A GDPD1 5'UTR 0.45 TCGA-FD-A3SN-01 17 63010911 63010911 T C GNA13 Missense_Mutation p.R200G 0.37 deleterious(0) probably_damaging(0.914) TCGA-FD-A3SN-01 17 65908474 65908474 G A BPTF Missense_Mutation p.D1492N 0.35 benign(0.044) TCGA-FD-A3SN-01 17 66420602 66420602 C T WIPI1 Intron 0.38 TCGA-FD-A3SN-01 17 72322364 72322364 C T KIF19 5'UTR 0.33 TCGA-FD-A3SN-01 17 7260042 7260042 C T TMEM95 3'UTR 0.68 TCGA-FD-A3SN-01 17 72846043 72846043 G A GRIN2C Silent p.I507I 0.37 TCGA-FD-A3SN-01 17 73016475 73016475 G A ICT1 Silent p.Q117Q 0.41 TCGA-FD-A3SN-01 17 73754661 73754661 G C GALK1 Missense_Mutation p.S271R 0.33 tolerated(0.26) benign(0.117) TCGA-FD-A3SN-01 17 74041408 74041408 C T SRP68 Silent p.E453E 0.38 TCGA-FD-A3SN-01 17 74093986 74093986 G A EXOC7 Silent p.D177D 0.30 TCGA-FD-A3SN-01 17 76115385 76115385 G A TMC6 Silent p.L602L 0.41 TCGA-FD-A3SN-01 17 9580108 9580108 C T USP43 Silent p.F293F 0.67 TCGA-FD-A3SN-01 18 13057683 13057683 G A CEP192 Nonsense_Mutation p.W1403* 0.27 TCGA-FD-A3SN-01 18 22805210 22805210 C T ZNF521 Missense_Mutation p.C891Y 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3SN-01 18 28714075 28714075 C T DSC1 Missense_Mutation p.R632H 0.49 tolerated(0.17) benign(0.005) TCGA-FD-A3SN-01 18 29054237 29054237 C T DSG3 Missense_Mutation p.A752V 0.58 tolerated(0.19) benign(0.002) TCGA-FD-A3SN-01 18 32682030 32682030 C T MAPRE2 Nonsense_Mutation p.R173* 0.56 TCGA-FD-A3SN-01 18 3596800 3596800 C T DLGAP1 Intron 0.41 TCGA-FD-A3SN-01 18 59888694 59888694 T G KIAA1468 Silent p.L274L 0.64 TCGA-FD-A3SN-01 18 9888112 9888112 G A TXNDC2 Missense_Mutation p.E546K 0.34 deleterious(0.01) probably_damaging(0.922) TCGA-FD-A3SN-01 19 11533473 11533473 G A CCDC151 Silent p.L391L 0.61 TCGA-FD-A3SN-01 19 13411423 13411423 C T CACNA1A Silent p.Q740Q 0.07 TCGA-FD-A3SN-01 19 14938996 14938996 C T OR7A5 Missense_Mutation p.E20K 0.52 tolerated_low_confidence(0.18) benign(0.008) TCGA-FD-A3SN-01 19 15342144 15342157 CAAGTCCACAGCCA - EPHX3 Frame_Shift_Del p.V127Afs*42 0.28 TCGA-FD-A3SN-01 19 15562865 15562865 C T RASAL3 Silent p.L961L 0.36 TCGA-FD-A3SN-01 19 17877494 17877499 TGGGAG - FCHO1 In_Frame_Del p.W71_E72del 0.27 TCGA-FD-A3SN-01 19 19650526 19650526 G T CILP2 Missense_Mutation p.G35C 0.28 deleterious_low_confidence(0) possibly_damaging(0.498) TCGA-FD-A3SN-01 19 20806954 20806954 G C ZNF626 3'UTR 0.28 TCGA-FD-A3SN-01 19 21300833 21300833 G A ZNF714 Missense_Mutation p.E455K 0.33 tolerated(0.15) possibly_damaging(0.561) TCGA-FD-A3SN-01 19 36159496 36159496 C T UPK1A Silent p.F75F 0.30 TCGA-FD-A3SN-01 19 36214671 36214671 G A KMT2B Missense_Mutation p.D1033N 0.38 probably_damaging(0.959) TCGA-FD-A3SN-01 19 36231306 36231306 C T IGFLR1 Missense_Mutation p.G106D 0.19 tolerated(0.2) possibly_damaging(0.662) TCGA-FD-A3SN-01 19 39936594 39936594 G A SUPT5H Missense_Mutation p.E22K 0.30 tolerated_low_confidence(0.35) unknown(0) TCGA-FD-A3SN-01 19 42744259 42744259 G A AC006486.9 Silent p.L20L 0.30 TCGA-FD-A3SN-01 19 42839208 42839208 G A MEGF8 Missense_Mutation p.E194K 0.35 tolerated(0.63) benign(0.064) TCGA-FD-A3SN-01 19 45852790 45852790 G C KLC3 Missense_Mutation p.R358P 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 19 45872219 45872219 T C ERCC2 Missense_Mutation p.Y72C 0.35 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SN-01 19 46914757 46914757 C T CCDC8 Silent p.R437R 0.36 TCGA-FD-A3SN-01 19 48374720 48374720 A G SULT2A1 Missense_Mutation p.W284R 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 19 49132163 49132163 C T SPHK2 Silent p.L366L 0.42 TCGA-FD-A3SN-01 19 50046469 50046469 G A RCN3 Silent p.%3D 0.41 TCGA-FD-A3SN-01 19 50139972 50139972 C A RRAS Silent p.V119V 0.35 TCGA-FD-A3SN-01 19 50243401 50243401 C T TSKS Missense_Mutation p.E513K 0.26 tolerated(0.11) possibly_damaging(0.555) TCGA-FD-A3SN-01 19 50315567 50315567 C T FUZ Missense_Mutation p.E87K 0.14 tolerated(0.11) benign(0.01) TCGA-FD-A3SN-01 19 52132666 52132666 C T SIGLEC5 Missense_Mutation p.M215I 0.27 deleterious(0.02) benign(0.007) TCGA-FD-A3SN-01 19 53668818 53668818 G A ZNF665 Nonsense_Mutation p.R309* 0.29 TCGA-FD-A3SN-01 19 58331276 58331276 G C CTD-2583A14.10 5'UTR 0.40 TCGA-FD-A3SN-01 19 58570623 58570623 C T ZNF135 Missense_Mutation p.S5L 0.67 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A3SN-01 19 6427193 6427193 C T SLC25A41 Silent p.S287S 0.38 TCGA-FD-A3SN-01 19 7075710 7075710 G A ZNF557 Missense_Mutation p.E26K 0.65 tolerated(0.61) benign(0.017) TCGA-FD-A3SN-01 1 10093679 10093679 G A UBE4B 5'UTR 0.28 TCGA-FD-A3SN-01 1 109805873 109805873 C T CELSR2 Silent p.G1606G 0.24 TCGA-FD-A3SN-01 1 113456585 113456585 A C SLC16A1 Silent p.V477V 0.42 TCGA-FD-A3SN-01 1 114246790 114246790 C T PHTF1 Splice_Site p.X602_splice 0.32 TCGA-FD-A3SN-01 1 11586880 11586880 A G PTCHD2 Missense_Mutation p.Q929R 0.25 deleterious_low_confidence(0.04) benign(0.031) TCGA-FD-A3SN-01 1 117944919 117944919 G A MAN1A2 Silent p.Q138Q 0.37 TCGA-FD-A3SN-01 1 118502031 118502031 G C WDR3 Missense_Mutation p.K931N 0.26 tolerated(0.12) probably_damaging(0.991) TCGA-FD-A3SN-01 1 11918889 11918889 A T NPPB Translation_Start_Site p.M1? 0.35 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SN-01 1 119456781 119456781 G A TBX15 Nonsense_Mutation p.R189* 0.39 TCGA-FD-A3SN-01 1 119683273 119683273 G T WARS2 5'UTR 0.53 TCGA-FD-A3SN-01 1 119683300 119683300 G A WARS2 5'Flank 0.50 TCGA-FD-A3SN-01 1 1249322 1249322 C T CPSF3L Intron 0.30 TCGA-FD-A3SN-01 1 144814845 144814845 G A NBPF9 Silent p.L160L 0.28 TCGA-FD-A3SN-01 1 144874026 144874026 G A PDE4DIP Missense_Mutation p.S1644F 0.17 tolerated(0.26) probably_damaging(0.975) TCGA-FD-A3SN-01 1 144917918 144917918 G A PDE4DIP Silent p.L456L 0.17 TCGA-FD-A3SN-01 1 152084109 152084109 G A TCHH Silent p.L528L 0.33 TCGA-FD-A3SN-01 1 153941087 153941087 G A CREB3L4 Missense_Mutation p.G29E 0.43 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-FD-A3SN-01 1 153941855 153941855 G T CREB3L4 Missense_Mutation p.S156I 0.43 tolerated(0.05) benign(0.008) TCGA-FD-A3SN-01 1 155145044 155145044 C T KRTCAP2 Missense_Mutation p.E100K 0.30 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SN-01 1 155316194 155316194 C G ASH1L Missense_Mutation p.D2624H 0.42 tolerated_low_confidence(0.05) possibly_damaging(0.798) TCGA-FD-A3SN-01 1 1563943 1563943 G A MIB2 Silent p.V796V 0.23 TCGA-FD-A3SN-01 1 15959933 15959933 G C DDI2 Splice_Site p.X169_splice 0.34 TCGA-FD-A3SN-01 1 15978369 15978369 C G DDI2 Missense_Mutation p.Q388E 0.45 tolerated(0.42) benign(0.15) TCGA-FD-A3SN-01 1 161059206 161059206 C T PVRL4 5'UTR 0.50 TCGA-FD-A3SN-01 1 16358726 16358726 G A CLCNKA Silent p.Q595Q 0.32 TCGA-FD-A3SN-01 1 165532806 165532806 G A LRRC52 Silent p.G229G 0.35 TCGA-FD-A3SN-01 1 167095044 167095044 G A DUSP27 Missense_Mutation p.E226K 0.39 tolerated(0.06) probably_damaging(0.992) TCGA-FD-A3SN-01 1 171174530 171174530 G A FMO2 Missense_Mutation p.E314K 0.43 deleterious(0.03) probably_damaging(0.917) TCGA-FD-A3SN-01 1 173953689 173953689 C T RC3H1 Silent p.K100K 0.43 TCGA-FD-A3SN-01 1 179478451 179478451 C G AXDND1 Missense_Mutation p.I803M 0.30 deleterious(0) possibly_damaging(0.703) TCGA-FD-A3SN-01 1 179993589 179993589 G A CEP350 Missense_Mutation p.R1141K 0.39 benign(0.049) TCGA-FD-A3SN-01 1 18808004 18808004 G A KLHDC7A Missense_Mutation p.D177N 0.26 tolerated(0.4) benign(0.003) TCGA-FD-A3SN-01 1 202092266 202092267 - ACA GPR37L1 In_Frame_Ins p.Y59_V60insN 0.46 TCGA-FD-A3SN-01 1 204197926 204197926 G - PLEKHA6 Frame_Shift_Del p.L939* 0.19 TCGA-FD-A3SN-01 1 204228552 204228552 C G PLEKHA6 Missense_Mutation p.G281R 0.32 deleterious(0.01) benign(0.008) TCGA-FD-A3SN-01 1 204228723 204228723 C G PLEKHA6 Missense_Mutation p.E224Q 0.26 tolerated(0.06) possibly_damaging(0.709) TCGA-FD-A3SN-01 1 204228847 204228847 C G PLEKHA6 Missense_Mutation p.E182D 0.27 deleterious(0.01) possibly_damaging(0.77) TCGA-FD-A3SN-01 1 210334350 210334350 A T SYT14 Missense_Mutation p.Q608L 0.36 deleterious(0.02) benign(0.43) TCGA-FD-A3SN-01 1 215259819 215259819 C T KCNK2 Missense_Mutation p.T52M 0.32 tolerated_low_confidence(0.09) benign(0.143) TCGA-FD-A3SN-01 1 224581534 224581534 A C WDR26 Missense_Mutation p.I652M 0.36 tolerated_low_confidence(0.1) benign(0.157) TCGA-FD-A3SN-01 1 228645076 228645076 G A HIST3H2A 3'UTR 0.46 TCGA-FD-A3SN-01 1 233394514 233394514 C T PCNXL2 Missense_Mutation p.G365E 0.32 deleterious_low_confidence(0) benign(0.055) TCGA-FD-A3SN-01 1 244218534 244218534 G A ZBTB18 Silent p.Q486Q 0.25 TCGA-FD-A3SN-01 1 24684904 24684904 G A STPG1 3'UTR 0.54 TCGA-FD-A3SN-01 1 247024465 247024465 C T AHCTF1 Missense_Mutation p.E1299K 0.34 tolerated(0.09) benign(0.057) TCGA-FD-A3SN-01 1 247588651 247588651 G A NLRP3 Missense_Mutation p.E636K 0.39 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SN-01 1 26153217 26153217 G A MTFR1L Silent p.L117L 0.36 TCGA-FD-A3SN-01 1 27056181 27056191 CAGCCATATGG - ARID1A Frame_Shift_Del p.Q393Rfs*3 0.24 TCGA-FD-A3SN-01 1 27480481 27480481 C T SLC9A1 Missense_Mutation p.M115I 0.32 tolerated(0.1) possibly_damaging(0.742) TCGA-FD-A3SN-01 1 27706336 27706336 G A CD164L2 3'UTR 0.52 TCGA-FD-A3SN-01 1 32157645 32157645 G T COL16A1 Missense_Mutation p.D406E 0.30 unknown(0) TCGA-FD-A3SN-01 1 33647113 33647113 G A TRIM62 5'UTR 0.62 TCGA-FD-A3SN-01 1 33989000 33989000 A G CSMD2 Silent p.D3328D 0.67 TCGA-FD-A3SN-01 1 35657035 35657035 G A SFPQ Silent p.I308I 0.48 TCGA-FD-A3SN-01 1 36762187 36762187 G A THRAP3 Missense_Mutation p.E707K 0.64 tolerated(0.21) possibly_damaging(0.452) TCGA-FD-A3SN-01 1 43855570 43855570 G A SZT2 5'Flank 0.23 TCGA-FD-A3SN-01 1 53387303 53387303 G A ECHDC2 Missense_Mutation p.R15W 0.40 tolerated(0.13) benign(0) TCGA-FD-A3SN-01 1 57284989 57284989 G A C1orf168 5'UTR 0.24 TCGA-FD-A3SN-01 1 62190818 62190818 C T TM2D1 Missense_Mutation p.S54N 0.42 deleterious_low_confidence(0.02) benign(0.393) TCGA-FD-A3SN-01 1 67560923 67560923 G A C1orf141 Missense_Mutation p.H200Y 0.30 tolerated(0.1) possibly_damaging(0.607) TCGA-FD-A3SN-01 1 70687232 70687232 C T SRSF11 Intron 0.50 TCGA-FD-A3SN-01 1 70736618 70736618 T C ANKRD13C Silent p.V472V 0.32 TCGA-FD-A3SN-01 1 71544365 71544365 C T ZRANB2 Missense_Mutation p.R28K 0.32 deleterious(0.01) probably_damaging(0.95) TCGA-FD-A3SN-01 1 79102839 79102840 - A IFI44L Frame_Shift_Ins p.M335Nfs*25 0.21 TCGA-FD-A3SN-01 1 89654466 89654466 C T GBP4 Silent p.E403E 0.39 TCGA-FD-A3SN-01 1 93812391 93812391 G A DR1 Silent p.K63K 0.33 TCGA-FD-A3SN-01 1 94017929 94017929 C T FNBP1L Intron 0.40 TCGA-FD-A3SN-01 1 98187148 98187148 T A DPYD Missense_Mutation p.D134V 0.16 deleterious(0) probably_damaging(0.976) TCGA-FD-A3SN-01 1 99772144 99772144 G C LPPR4 Missense_Mutation p.E624Q 0.35 deleterious(0) probably_damaging(0.962) TCGA-FD-A3SN-01 20 1458977 1458977 C T SIRPB2 Missense_Mutation p.V243I 0.32 deleterious(0) probably_damaging(0.969) TCGA-FD-A3SN-01 20 2083843 2083843 G A STK35 Missense_Mutation p.E242K 0.31 tolerated(0.14) possibly_damaging(0.896) TCGA-FD-A3SN-01 20 25038496 25038496 G A ACSS1 Silent p.L81L 0.38 TCGA-FD-A3SN-01 20 30193102 30193102 C T ID1 5'UTR 0.50 TCGA-FD-A3SN-01 20 32255571 32255571 G A ACTL10 Missense_Mutation p.D90N 0.44 tolerated(0.06) probably_damaging(0.991) TCGA-FD-A3SN-01 20 33574708 33574708 G A MYH7B Missense_Mutation p.M350I 0.44 benign(0.012) TCGA-FD-A3SN-01 20 34204137 34204137 C T SPAG4 Missense_Mutation p.T71I 0.41 tolerated_low_confidence(0.08) benign(0.049) TCGA-FD-A3SN-01 20 36322537 36322537 G A CTNNBL1 Missense_Mutation p.E5K 0.33 tolerated(0.07) benign(0.086) TCGA-FD-A3SN-01 20 3732653 3732653 T A HSPA12B Missense_Mutation p.L634H 0.42 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SN-01 20 40049589 40049589 G T CHD6 Missense_Mutation p.P1896T 0.49 tolerated_low_confidence(0.09) benign(0.006) TCGA-FD-A3SN-01 20 43530229 43530229 G A YWHAB Missense_Mutation p.E19K 0.49 deleterious_low_confidence(0.02) benign(0.386) TCGA-FD-A3SN-01 20 44573628 44573628 G A PCIF1 Missense_Mutation p.R376Q 0.76 tolerated(0.1) benign(0.071) TCGA-FD-A3SN-01 20 4768393 4768393 C T RASSF2 Silent p.Q233Q 0.40 TCGA-FD-A3SN-01 20 77233 77233 G C DEFB125 3'Flank 0.37 TCGA-FD-A3SN-01 20 8722214 8722214 G C PLCB1 Missense_Mutation p.K839N 0.20 tolerated(0.32) benign(0.011) TCGA-FD-A3SN-01 21 34120941 34120941 T C PAXBP1 Missense_Mutation p.I598V 0.76 tolerated(0.15) possibly_damaging(0.617) TCGA-FD-A3SN-01 21 34962153 34962153 C G CRYZL1 Missense_Mutation p.R342T 0.65 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A3SN-01 21 43786621 43786621 C T TFF1 5'UTR 0.75 TCGA-FD-A3SN-01 21 46117961 46117961 G A TSPEAR Intron 0.27 TCGA-FD-A3SN-01 21 47821561 47821561 T G PCNT Missense_Mutation p.S1630A 0.52 benign(0.002) TCGA-FD-A3SN-01 21 47821562 47821562 C A PCNT Nonsense_Mutation p.S1630* 0.52 TCGA-FD-A3SN-01 22 21134339 21134339 G A SERPIND1 Missense_Mutation p.E247K 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-FD-A3SN-01 22 21134464 21134464 G A SERPIND1 Missense_Mutation p.M288I 0.24 tolerated(0.13) benign(0.376) TCGA-FD-A3SN-01 22 28193195 28193195 A C MN1 Missense_Mutation p.S1113A 0.24 possibly_damaging(0.605) TCGA-FD-A3SN-01 22 30163368 30163368 G A UQCR10 5'UTR 0.54 TCGA-FD-A3SN-01 22 38875600 38875600 G A KDELR3 Silent p.V65V 0.56 TCGA-FD-A3SN-01 22 39636860 39636860 G A PDGFB Intron 0.41 TCGA-FD-A3SN-01 22 42271711 42271711 C G SREBF2 Missense_Mutation p.L457V 0.52 tolerated(0.36) possibly_damaging(0.685) TCGA-FD-A3SN-01 22 42392933 42392933 C T SEPT3 Missense_Mutation p.P347S 0.61 tolerated_low_confidence(0.48) possibly_damaging(0.857) TCGA-FD-A3SN-01 2 100019151 100019151 T C REV1 Missense_Mutation p.N1166S 0.36 tolerated(0.96) benign(0.002) TCGA-FD-A3SN-01 2 10269168 10269168 G A RRM2 Missense_Mutation p.E362K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.79) TCGA-FD-A3SN-01 2 103142766 103142766 C T SLC9A4 Nonsense_Mutation p.Q667* 0.34 TCGA-FD-A3SN-01 2 10350668 10350668 C T C2orf48 Missense_Mutation p.T142I 0.34 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-FD-A3SN-01 2 109369565 109369565 C T RANBP2 Missense_Mutation p.P623S 0.27 tolerated(0.18) benign(0.072) TCGA-FD-A3SN-01 2 110935937 110935937 A G NPHP1 Intron 0.38 TCGA-FD-A3SN-01 2 113147110 113147110 C T RGPD8 Missense_Mutation p.D1138N 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A3SN-01 2 116594297 116594297 A G DPP10 Missense_Mutation p.I723M 0.41 deleterious(0.05) benign(0.026) TCGA-FD-A3SN-01 2 120438762 120438762 G A TMEM177 Silent p.L111L 0.33 TCGA-FD-A3SN-01 2 120725491 120725491 T C PTPN4 Silent p.Y879Y 0.28 TCGA-FD-A3SN-01 2 128046431 128046431 C T ERCC3 Missense_Mutation p.E278K 0.38 deleterious(0.02) possibly_damaging(0.902) TCGA-FD-A3SN-01 2 128783752 128783752 C T SAP130 Intron 0.31 TCGA-FD-A3SN-01 2 160206422 160206422 C T BAZ2B Missense_Mutation p.E1554K 0.34 possibly_damaging(0.849) TCGA-FD-A3SN-01 2 162273101 162273101 G A TBR1 Silent p.T60T 0.34 TCGA-FD-A3SN-01 2 165551902 165551902 G A COBLL1 Missense_Mutation p.S705L 0.35 tolerated(0.12) benign(0.231) TCGA-FD-A3SN-01 2 179398127 179398127 G A TTN Silent p.L34405L 0.35 TCGA-FD-A3SN-01 2 179422195 179422195 C G TTN Missense_Mutation p.G29265A 0.26 TCGA-FD-A3SN-01 2 179429435 179429435 C G TTN Missense_Mutation p.E27142Q 0.39 TCGA-FD-A3SN-01 2 186673207 186673207 G A FSIP2 Missense_Mutation p.E6481K 0.47 benign(0.286) TCGA-FD-A3SN-01 2 186673435 186673435 G C FSIP2 Missense_Mutation p.D6557H 0.44 possibly_damaging(0.67) TCGA-FD-A3SN-01 2 187466860 187466860 A T ITGAV Missense_Mutation p.I100F 0.33 deleterious(0.02) benign(0.258) TCGA-FD-A3SN-01 2 192863864 192863864 C T TMEFF2 Missense_Mutation p.D203N 0.35 tolerated(0.63) probably_damaging(0.911) TCGA-FD-A3SN-01 2 20237361 20237361 G C LAPTM4A Missense_Mutation p.L83V 0.37 tolerated(0.09) possibly_damaging(0.609) TCGA-FD-A3SN-01 2 202631985 202631985 G A ALS2 Missense_Mutation p.L48F 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-FD-A3SN-01 2 210558419 210558419 G C MAP2 Missense_Mutation p.D509H 0.50 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-FD-A3SN-01 2 219137299 219137299 C T PNKD Intron 0.47 TCGA-FD-A3SN-01 2 238305464 238305464 G A COL6A3 5'UTR 0.59 TCGA-FD-A3SN-01 2 24521660 24521660 T C ITSN2 Silent p.R456R 0.27 TCGA-FD-A3SN-01 2 26533881 26533881 G T GPR113 Nonsense_Mutation p.Y905* 0.57 TCGA-FD-A3SN-01 2 29004678 29004678 G C PPP1CB Missense_Mutation p.V164L 0.22 tolerated_low_confidence(0.06) benign(0.03) TCGA-FD-A3SN-01 2 29245089 29245089 C T FAM179A Missense_Mutation p.L476F 0.31 tolerated(0.12) possibly_damaging(0.707) TCGA-FD-A3SN-01 2 33589339 33589339 G A LTBP1 Missense_Mutation p.E1486K 0.39 deleterious(0.05) possibly_damaging(0.808) TCGA-FD-A3SN-01 2 47177528 47177528 G A TTC7A Missense_Mutation p.E71K 0.39 deleterious(0) probably_damaging(0.967) TCGA-FD-A3SN-01 2 53992675 53992675 G C ASB3 Missense_Mutation p.S47C 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 2 55882034 55882034 C T PNPT1 Splice_Site p.X499_splice 0.27 TCGA-FD-A3SN-01 2 61431458 61431458 C T USP34 Missense_Mutation p.S3106N 0.37 tolerated(0.62) benign(0.004) TCGA-FD-A3SN-01 2 68592492 68592492 A G PLEK Silent p.P3P 0.39 TCGA-FD-A3SN-01 2 69664580 69664580 C T NFU1 5'UTR 0.50 TCGA-FD-A3SN-01 2 71192177 71192177 C T ATP6V1B1 Missense_Mutation p.P490S 0.39 tolerated(0.17) benign(0.084) TCGA-FD-A3SN-01 2 74718624 74718624 C T TTC31 Missense_Mutation p.S234F 0.32 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SN-01 2 86374830 86374830 C T IMMT Missense_Mutation p.E510K 0.41 tolerated(0.07) benign(0.196) TCGA-FD-A3SN-01 2 86459890 86459890 G A REEP1 Silent p.F158F 0.41 TCGA-FD-A3SN-01 2 88890382 88890382 A G EIF2AK3 Missense_Mutation p.V319A 0.31 deleterious(0) probably_damaging(0.927) TCGA-FD-A3SN-01 2 96943981 96943981 C G SNRNP200 Silent p.L1868L 0.33 TCGA-FD-A3SN-01 2 97779539 97779539 C T ANKRD36 Silent p.F21F 0.27 TCGA-FD-A3SN-01 2 99804704 99804704 C T MRPL30 Missense_Mutation p.S39L 0.33 deleterious(0) probably_damaging(0.928) TCGA-FD-A3SN-01 3 105086106 105086106 G A ALCAM 5'UTR 0.40 TCGA-FD-A3SN-01 3 107474514 107474514 C T BBX Nonsense_Mutation p.Q299* 0.30 TCGA-FD-A3SN-01 3 112724493 112724519 CATGGATGCCTCTAAGATTTTCATGAA - C3orf17 In_Frame_Del p.I523_E532delinsK 0.41 TCGA-FD-A3SN-01 3 119905579 119905579 C T GPR156 Missense_Mutation p.D176N 0.32 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 3 121126442 121126442 G A STXBP5L Missense_Mutation p.M1004I 0.48 deleterious(0.05) benign(0.012) TCGA-FD-A3SN-01 3 121251880 121251880 G T POLQ Nonsense_Mutation p.S306* 0.31 TCGA-FD-A3SN-01 3 125313607 125313607 G A OSBPL11 Missense_Mutation p.S13L 0.36 tolerated_low_confidence(0.07) benign(0.17) TCGA-FD-A3SN-01 3 125725491 125725491 C G SLC41A3 Intron 0.23 TCGA-FD-A3SN-01 3 130694262 130694262 G A ATP2C1 Silent p.L534L 0.44 TCGA-FD-A3SN-01 3 131181425 131181425 G A MRPL3 3'UTR 0.38 TCGA-FD-A3SN-01 3 136076567 136076567 C G STAG1 Missense_Mutation p.K1020N 0.33 deleterious(0) possibly_damaging(0.881) TCGA-FD-A3SN-01 3 139071544 139071544 G A MRPS22 Missense_Mutation p.R263H 0.33 tolerated(0.06) possibly_damaging(0.828) TCGA-FD-A3SN-01 3 158519924 158519924 C T MFSD1 Missense_Mutation p.P44S 0.38 tolerated_low_confidence(0.78) benign(0.005) TCGA-FD-A3SN-01 3 158519993 158519993 G A MFSD1 Missense_Mutation p.E67K 0.24 tolerated(0.2) benign(0.007) TCGA-FD-A3SN-01 3 160219955 160219955 A C KPNA4 Missense_Mutation p.I501M 0.42 deleterious(0.02) benign(0.004) TCGA-FD-A3SN-01 3 169496653 169496653 G A MYNN Missense_Mutation p.A122T 0.31 tolerated(0.11) benign(0.045) TCGA-FD-A3SN-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.56 deleterious(0.04) probably_damaging(0.96) TCGA-FD-A3SN-01 3 182804570 182804570 C T MCCC1 Missense_Mutation p.E94K 0.55 deleterious(0) possibly_damaging(0.558) TCGA-FD-A3SN-01 3 184429408 184429414 CCAAGGC - MAGEF1 Frame_Shift_Del p.A66Qfs*9 0.44 TCGA-FD-A3SN-01 3 192516517 192516517 G A MB21D2 Silent p.F378F 0.29 TCGA-FD-A3SN-01 3 19575010 19575010 G T KCNH8 Missense_Mutation p.V915L 0.72 tolerated_low_confidence(0.66) benign(0) TCGA-FD-A3SN-01 3 196198864 196198864 T A RNF168 Silent p.S514S 0.31 TCGA-FD-A3SN-01 3 196675332 196675332 G A PIGZ Missense_Mutation p.H146Y 0.34 tolerated(0.58) benign(0.008) TCGA-FD-A3SN-01 3 197597072 197597072 G A LRCH3 Missense_Mutation p.D639N 0.36 deleterious(0.04) benign(0.255) TCGA-FD-A3SN-01 3 27346359 27346359 C T NEK10 Missense_Mutation p.D303N 0.50 deleterious(0) possibly_damaging(0.678) TCGA-FD-A3SN-01 3 29323103 29323103 A T RBMS3 5'UTR 0.71 TCGA-FD-A3SN-01 3 33110348 33110348 C T GLB1 Silent p.L120L 0.62 TCGA-FD-A3SN-01 3 39228107 39228107 G A XIRP1 Silent p.L944L 0.74 TCGA-FD-A3SN-01 3 48964914 48964914 A T ARIH2 5'UTR 0.32 TCGA-FD-A3SN-01 3 51990695 51990695 G A GPR62 Missense_Mutation p.E343K 0.70 tolerated(0.58) benign(0.007) TCGA-FD-A3SN-01 3 52246323 52246323 G A ALAS1 Missense_Mutation p.R550K 0.74 tolerated(0.86) benign(0.007) TCGA-FD-A3SN-01 3 77657032 77657032 C T ROBO2 Silent p.L1090L 0.22 TCGA-FD-A3SN-01 3 97726706 97726706 C T GABRR3 Intron 0.32 TCGA-FD-A3SN-01 4 130023826 130023826 A G C4orf33 Missense_Mutation p.I21V 0.29 tolerated(0.54) benign(0.003) TCGA-FD-A3SN-01 4 13543785 13543785 C T NKX3-2 Silent p.K278K 0.28 TCGA-FD-A3SN-01 4 155410 155410 C T ZNF718 RNA 0.37 TCGA-FD-A3SN-01 4 156784856 156784856 G C ASIC5 Missense_Mutation p.P31A 0.54 tolerated(0.7) benign(0.003) TCGA-FD-A3SN-01 4 159644539 159644539 G A PPID 5'UTR 0.44 TCGA-FD-A3SN-01 4 183267920 183267920 G A TENM3 Missense_Mutation p.D117N 0.40 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-FD-A3SN-01 4 1932436 1932436 G A WHSC1 Silent p.Q498Q 0.35 TCGA-FD-A3SN-01 4 2209868 2209868 G A POLN Missense_Mutation p.S187F 0.38 deleterious(0.02) possibly_damaging(0.885) TCGA-FD-A3SN-01 4 25253958 25253958 C A PI4K2B Nonsense_Mutation p.S95* 0.34 TCGA-FD-A3SN-01 4 2900171 2900171 C G ADD1 Silent p.L299L 0.37 TCGA-FD-A3SN-01 4 344007 344007 G C ZNF141 Intron 0.48 TCGA-FD-A3SN-01 4 39460678 39460678 G A LIAS 5'UTR 0.38 TCGA-FD-A3SN-01 4 48096182 48096182 C T TXK Silent p.K207K 0.31 TCGA-FD-A3SN-01 4 48517101 48517101 C T FRYL Silent p.L2627L 0.35 TCGA-FD-A3SN-01 4 49052780 49052780 C T CWH43 Silent p.I645I 0.34 TCGA-FD-A3SN-01 4 53786903 53786903 G T SCFD2 Missense_Mutation p.H566N 0.44 tolerated(0.34) benign(0.005) TCGA-FD-A3SN-01 4 54374161 54374161 C T LNX1 Missense_Mutation p.R205Q 0.19 tolerated(0.65) benign(0.014) TCGA-FD-A3SN-01 4 65194231 65194231 A G TECRL Silent p.C110C 0.32 TCGA-FD-A3SN-01 4 6718478 6718478 C G BLOC1S4 Missense_Mutation p.S181W 0.43 deleterious(0) probably_damaging(0.981) TCGA-FD-A3SN-01 4 74277802 74277802 A T ALB Missense_Mutation p.E268V 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A3SN-01 4 74453627 74453627 G A RASSF6 Silent p.D136D 0.32 TCGA-FD-A3SN-01 4 77818388 77818388 C T SOWAHB Silent p.L205L 0.50 TCGA-FD-A3SN-01 4 79434557 79434557 C T FRAS1 Missense_Mutation p.S3342L 0.43 probably_damaging(0.987) TCGA-FD-A3SN-01 4 81207685 81207685 G A FGF5 Silent p.S222S 0.46 TCGA-FD-A3SN-01 4 84350762 84350762 G A HELQ Silent p.L811L 0.38 TCGA-FD-A3SN-01 5 112200214 112200214 G A SRP19 Missense_Mutation p.V60I 0.49 tolerated(0.21) benign(0.006) TCGA-FD-A3SN-01 5 118274974 118274974 C T DTWD2 Silent p.V107V 0.73 TCGA-FD-A3SN-01 5 127685049 127685049 A G FBN2 Silent p.R993R 0.57 TCGA-FD-A3SN-01 5 134303669 134303669 G A CATSPER3 5'UTR 0.68 TCGA-FD-A3SN-01 5 147449958 147449958 C G SPINK5 Missense_Mutation p.Q52E 0.54 tolerated(0.13) benign(0.009) TCGA-FD-A3SN-01 5 147499895 147499895 G A SPINK5 Missense_Mutation p.E827K 0.50 tolerated(0.28) benign(0.02) TCGA-FD-A3SN-01 5 148930407 148930407 C T CSNK1A1 Missense_Mutation p.E41K 0.57 tolerated_low_confidence(0.05) benign(0.05) TCGA-FD-A3SN-01 5 151179821 151179822 - GGTGG G3BP1 Frame_Shift_Ins p.R335Gfs*2 0.43 TCGA-FD-A3SN-01 5 16458679 16458679 G A ZNF622 Missense_Mutation p.S370L 0.22 tolerated(0.22) benign(0.009) TCGA-FD-A3SN-01 5 176053748 176053748 C T SNCB Missense_Mutation p.E46K 0.57 tolerated(0.08) benign(0.022) TCGA-FD-A3SN-01 5 176053750 176053750 C T SNCB Missense_Mutation p.R45Q 0.57 deleterious(0.02) benign(0.028) TCGA-FD-A3SN-01 5 33997532 33997532 C G AMACR Intron 0.25 TCGA-FD-A3SN-01 5 38481864 38481864 C T LIFR Missense_Mutation p.D1043N 0.35 deleterious(0.02) probably_damaging(0.989) TCGA-FD-A3SN-01 5 40716332 40716332 G A TTC33 Missense_Mutation p.S235F 0.35 deleterious(0.01) probably_damaging(0.949) TCGA-FD-A3SN-01 5 52096666 52096666 C T PELO Silent p.L146L 0.44 TCGA-FD-A3SN-01 5 54721068 54721070 GTT - PPAP2A In_Frame_Del p.T275del 0.41 TCGA-FD-A3SN-01 5 54929659 54929659 C T SLC38A9 Missense_Mutation p.M451I 0.37 deleterious(0.01) benign(0.009) TCGA-FD-A3SN-01 5 79025761 79025761 G A CMYA5 Silent p.L391L 0.64 TCGA-FD-A3SN-01 6 108676919 108676919 A G LACE1 Silent p.K159K 0.69 TCGA-FD-A3SN-01 6 109762293 109762293 G A PPIL6 5'UTR 0.61 TCGA-FD-A3SN-01 6 111912967 111912967 G A TRAF3IP2 Missense_Mutation p.S108F 0.54 tolerated(0.34) benign(0.008) TCGA-FD-A3SN-01 6 112466047 112466047 G A LAMA4 Silent p.S814S 0.71 TCGA-FD-A3SN-01 6 129826498 129826498 C T LAMA2 Missense_Mutation p.P2901S 0.74 tolerated(0.15) probably_damaging(1) TCGA-FD-A3SN-01 6 139265753 139265753 G A REPS1 Missense_Mutation p.S212F 0.43 tolerated(0.62) benign(0.077) TCGA-FD-A3SN-01 6 160514652 160514652 C T IGF2R Intron 0.62 TCGA-FD-A3SN-01 6 169648584 169648584 G A THBS2 Silent p.F179F 0.52 TCGA-FD-A3SN-01 6 26033332 26033332 G A HIST1H2AB 3'UTR 0.61 TCGA-FD-A3SN-01 6 27835260 27835260 C T HIST1H1B Silent p.E16E 0.71 TCGA-FD-A3SN-01 6 30523426 30523426 C T GNL1 Missense_Mutation p.D49N 0.51 tolerated(0.11) benign(0.012) TCGA-FD-A3SN-01 6 31239458 31239458 C T HLA-C Silent p.E87E 0.58 TCGA-FD-A3SN-01 6 31695035 31695035 G A DDAH2 Silent p.L279L 0.48 TCGA-FD-A3SN-01 6 31842778 31842778 G A SLC44A4 Silent p.N90N 0.61 TCGA-FD-A3SN-01 6 31864542 31864542 C T EHMT2 Missense_Mutation p.D57N 0.59 tolerated_low_confidence(0.15) benign(0.132) TCGA-FD-A3SN-01 6 33162525 33162525 G A RXRB Silent p.L516L 0.55 TCGA-FD-A3SN-01 6 36882094 36882094 G A C6orf89 Silent p.Q153Q 0.48 TCGA-FD-A3SN-01 6 39693132 39693132 G A KIF6 5'UTR 0.58 TCGA-FD-A3SN-01 6 41903779 41903779 G A CCND3 Nonsense_Mutation p.Q260* 0.67 TCGA-FD-A3SN-01 6 55304265 55304265 C G HMGCLL1 Missense_Mutation p.L326F 0.58 deleterious(0) probably_damaging(0.929) TCGA-FD-A3SN-01 6 70944596 70944596 C T COL9A1 Silent p.R720R 0.54 TCGA-FD-A3SN-01 6 7182305 7182305 G A RREB1 Missense_Mutation p.R54K 0.61 deleterious(0.04) possibly_damaging(0.72) TCGA-FD-A3SN-01 6 7880494 7880494 C T BMP6 Missense_Mutation p.S487L 0.52 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SN-01 7 100364685 100364685 C T ZAN Silent p.G1555G 0.29 TCGA-FD-A3SN-01 7 100677575 100677575 G T MUC17 Nonsense_Mutation p.E960* 0.20 TCGA-FD-A3SN-01 7 105909656 105909656 C T NAMPT Missense_Mutation p.D184N 0.26 tolerated(0.09) benign(0.036) TCGA-FD-A3SN-01 7 107531661 107531661 G A DLD 5'UTR 0.32 TCGA-FD-A3SN-01 7 107531736 107531736 T A DLD Splice_Site p.X13_splice 0.36 TCGA-FD-A3SN-01 7 114299688 114299688 G T FOXP2 Missense_Mutation p.R561L 0.10 deleterious(0.02) probably_damaging(0.93) TCGA-FD-A3SN-01 7 127961459 127961459 G C RBM28 Missense_Mutation p.Q475E 0.31 tolerated(0.07) probably_damaging(0.977) TCGA-FD-A3SN-01 7 128630024 128630024 G A TNPO3 Nonsense_Mutation p.Q497* 0.31 TCGA-FD-A3SN-01 7 129592475 129592475 C T UBE2H 5'UTR 0.32 TCGA-FD-A3SN-01 7 139107066 139107066 C T LUC7L2 Missense_Mutation p.R453C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3SN-01 7 142111643 142111643 G A TRBV5-7 Silent p.I31I 0.32 TCGA-FD-A3SN-01 7 148523641 148523641 G T EZH2 Missense_Mutation p.S271Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SN-01 7 150817139 150817139 C T AGAP3 Silent p.I345I 0.60 TCGA-FD-A3SN-01 7 156746908 156746908 C T NOM1 Silent p.C408C 0.08 TCGA-FD-A3SN-01 7 1579901 1579901 G A MAFK Missense_Mutation p.V121M 0.30 deleterious(0.03) possibly_damaging(0.741) TCGA-FD-A3SN-01 7 158557520 158557520 C T ESYT2 Missense_Mutation p.E365K 0.34 deleterious(0) possibly_damaging(0.839) TCGA-FD-A3SN-01 7 28858777 28858777 C T CREB5 Nonsense_Mutation p.Q470* 0.36 TCGA-FD-A3SN-01 7 36726373 36726373 C T AOAH Missense_Mutation p.E52K 0.27 deleterious(0.03) benign(0.059) TCGA-FD-A3SN-01 7 44556401 44556401 G C NPC1L1 Silent p.L1167L 0.20 TCGA-FD-A3SN-01 7 47344505 47344505 G A TNS3 Missense_Mutation p.S916L 0.43 tolerated(0.07) benign(0.001) TCGA-FD-A3SN-01 7 64168093 64168093 G C ZNF107 Missense_Mutation p.E471Q 0.33 tolerated(0.26) benign(0.152) TCGA-FD-A3SN-01 7 66463931 66463931 G A TYW1 Missense_Mutation p.G88E 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 7 72738632 72738632 G A TRIM50 Missense_Mutation p.R52C 0.34 tolerated(0.07) benign(0.052) TCGA-FD-A3SN-01 7 76139923 76139923 G A UPK3B 5'UTR 0.27 TCGA-FD-A3SN-01 7 82583410 82583410 C T PCLO Missense_Mutation p.D2287N 0.32 unknown(0) TCGA-FD-A3SN-01 7 87533643 87533643 A G DBF4 Missense_Mutation p.S321G 0.49 deleterious(0) probably_damaging(0.923) TCGA-FD-A3SN-01 7 87797475 87797475 A T ADAM22 Missense_Mutation p.I739L 0.28 deleterious(0) possibly_damaging(0.723) TCGA-FD-A3SN-01 7 91863905 91863905 C T KRIT1 Missense_Mutation p.E283K 0.37 deleterious(0.04) benign(0.045) TCGA-FD-A3SN-01 7 92462443 92462443 C T CDK6 Silent p.L65L 0.50 TCGA-FD-A3SN-01 8 10467275 10467275 C T RP1L1 Missense_Mutation p.E1445K 0.43 unknown(0) TCGA-FD-A3SN-01 8 110575725 110575725 G A EBAG9 Intron 0.42 TCGA-FD-A3SN-01 8 12583256 12583256 C T LONRF1 Missense_Mutation p.E715K 0.35 deleterious(0.04) benign(0.362) TCGA-FD-A3SN-01 8 13251059 13251059 C T DLC1 Intron 0.32 TCGA-FD-A3SN-01 8 144810877 144810877 C G FAM83H Missense_Mutation p.E252Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-FD-A3SN-01 8 144995372 144995372 C G PLEC Missense_Mutation p.E3010Q 0.36 benign(0.379) TCGA-FD-A3SN-01 8 144995411 144995411 C T PLEC Missense_Mutation p.E2997K 0.36 probably_damaging(0.962) TCGA-FD-A3SN-01 8 144995865 144995865 C G PLEC Missense_Mutation p.E2845D 0.34 possibly_damaging(0.456) TCGA-FD-A3SN-01 8 144996723 144996723 C G PLEC Missense_Mutation p.E2595D 0.32 probably_damaging(0.989) TCGA-FD-A3SN-01 8 144997295 144997295 C A PLEC Nonsense_Mutation p.E2405* 0.32 TCGA-FD-A3SN-01 8 145726105 145726105 G T PPP1R16A Missense_Mutation p.D290Y 0.56 deleterious(0) probably_damaging(0.983) TCGA-FD-A3SN-01 8 29197718 29197718 G C DUSP4 Missense_Mutation p.S159C 0.69 tolerated(0.18) benign(0.275) TCGA-FD-A3SN-01 8 30464631 30464631 C T GTF2E2 Missense_Mutation p.D196N 0.56 tolerated(0.05) probably_damaging(0.998) TCGA-FD-A3SN-01 8 4277529 4277529 A G CSMD1 Missense_Mutation p.W121R 0.33 benign(0.131) TCGA-FD-A3SN-01 8 48749802 48749802 C T PRKDC Missense_Mutation p.E2577K 0.26 possibly_damaging(0.896) TCGA-FD-A3SN-01 8 53853373 53853373 C T NPBWR1 Silent p.L302L 0.25 TCGA-FD-A3SN-01 8 56699306 56699306 C A TGS1 Missense_Mutation p.N283K 0.34 tolerated(1) benign(0) TCGA-FD-A3SN-01 8 57905976 57905976 C T IMPAD1 Missense_Mutation p.D57N 0.43 tolerated(0.51) benign(0.001) TCGA-FD-A3SN-01 8 59720693 59720693 C T TOX Missense_Mutation p.D510N 0.32 tolerated(0.13) probably_damaging(0.972) TCGA-FD-A3SN-01 8 67342183 67342183 C T RRS1 Missense_Mutation p.R273C 0.36 deleterious(0.01) possibly_damaging(0.893) TCGA-FD-A3SN-01 8 74231361 74231361 G C RDH10 Missense_Mutation p.E186Q 0.36 tolerated(0.13) possibly_damaging(0.505) TCGA-FD-A3SN-01 8 86048162 86048162 G C LRRCC1 Missense_Mutation p.E765Q 0.38 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 8 95419768 95419768 C T RAD54B Missense_Mutation p.C227Y 0.33 tolerated(1) benign(0.001) TCGA-FD-A3SN-01 8 99961579 99961579 G C OSR2 Missense_Mutation p.M133I 0.31 tolerated(0.22) benign(0.009) TCGA-FD-A3SN-01 9 100092767 100092767 C G CCDC180 Missense_Mutation p.F708L 0.32 tolerated(0.68) benign(0.017) TCGA-FD-A3SN-01 9 100850218 100850218 G T TRIM14 Missense_Mutation p.T288K 0.27 tolerated(0.15) benign(0.087) TCGA-FD-A3SN-01 9 130911943 130911943 G A LCN2 Splice_Site p.X46_splice 0.34 TCGA-FD-A3SN-01 9 131392643 131392643 G A SPTAN1 Missense_Mutation p.E2251K 0.39 deleterious(0) benign(0.037) TCGA-FD-A3SN-01 9 131482670 131482670 C T PKN3 Intron 0.35 TCGA-FD-A3SN-01 9 133759700 133759700 G A ABL1 Missense_Mutation p.E694K 0.45 tolerated_low_confidence(0.55) probably_damaging(0.991) TCGA-FD-A3SN-01 9 135781455 135781455 C T TSC1 Missense_Mutation p.D504N 0.30 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SN-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.34 deleterious(0) probably_damaging(1) TCGA-FD-A3SN-01 9 140069557 140069557 G A ANAPC2 Missense_Mutation p.S769L 0.21 deleterious(0.01) possibly_damaging(0.67) TCGA-FD-A3SN-01 9 140100050 140100050 C T TMEM203 5'UTR 0.39 TCGA-FD-A3SN-01 9 140446839 140446839 G A MRPL41 Silent p.K102K 0.39 TCGA-FD-A3SN-01 9 19290767 19290767 C G DENND4C Missense_Mutation p.L232V 0.60 tolerated(0.29) probably_damaging(0.99) TCGA-FD-A3SN-01 9 2115859 2115859 A C SMARCA2 Missense_Mutation p.Q1165P 0.56 benign(0.153) TCGA-FD-A3SN-01 9 90534159 90534160 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.09 TCGA-FD-A3SN-01 9 98660209 98660209 C T ERCC6L2 Silent p.L195L 0.34 TCGA-FD-A3SN-01 X 134166345 134166345 G A FAM127A 5'UTR 0.64 TCGA-FD-A3SN-01 X 135579901 135579901 G A HTATSF1 Missense_Mutation p.E20K 0.73 tolerated(0.08) benign(0.034) TCGA-FD-A3SN-01 X 154282927 154282927 C A FUNDC2 Missense_Mutation p.L184M 0.66 deleterious(0.01) probably_damaging(0.988) TCGA-FD-A3SN-01 X 17746218 17746218 C G NHS Missense_Mutation p.T1310S 0.71 tolerated_low_confidence(0.42) benign(0.009) TCGA-FD-A3SN-01 X 47842407 47842407 G A ZNF182 Silent p.L77L 0.86 TCGA-FD-A3SN-01 X 50213550 50213550 G A DGKK RNA 0.69 TCGA-FD-A3SN-01 X 73044223 73044223 T A XIST RNA 0.88 TCGA-FD-A3SO-01 10 101981902 101981902 C G CHUK Missense_Mutation p.E118Q 0.14 deleterious(0.04) probably_damaging(1) TCGA-FD-A3SO-01 10 103586926 103586926 C G KCNIP2 3'Flank 0.17 TCGA-FD-A3SO-01 10 103587157 103587157 C A KCNIP2 Missense_Mutation p.D271Y 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 10 103587660 103587660 C G KCNIP2 Missense_Mutation p.E245Q 0.20 deleterious(0) possibly_damaging(0.549) TCGA-FD-A3SO-01 10 103588900 103588900 C G KCNIP2 Missense_Mutation p.E109Q 0.23 tolerated(0.06) possibly_damaging(0.64) TCGA-FD-A3SO-01 10 103900787 103900787 C T PPRC1 Missense_Mutation p.S841L 0.39 tolerated_low_confidence(0.06) benign(0.009) TCGA-FD-A3SO-01 10 105780291 105780291 C T SLK Nonsense_Mutation p.Q1123* 0.21 TCGA-FD-A3SO-01 10 105780327 105780327 C A SLK Missense_Mutation p.Q1135K 0.23 tolerated(0.07) probably_damaging(0.929) TCGA-FD-A3SO-01 10 117884737 117884737 G C GFRA1 Missense_Mutation p.I255M 0.39 deleterious(0.02) probably_damaging(0.971) TCGA-FD-A3SO-01 10 119134253 119134253 G A PDZD8 Silent p.L162L 0.19 TCGA-FD-A3SO-01 10 127512238 127512238 G A BCCIP Missense_Mutation p.D38N 0.16 deleterious(0.02) benign(0.012) TCGA-FD-A3SO-01 10 127512271 127512271 G A BCCIP Missense_Mutation p.E49K 0.22 tolerated(0.13) benign(0.003) TCGA-FD-A3SO-01 10 127512277 127512277 G A BCCIP Missense_Mutation p.E51K 0.22 tolerated(0.06) benign(0.159) TCGA-FD-A3SO-01 10 135176333 135176333 C T ECHS1 3'UTR 0.24 TCGA-FD-A3SO-01 10 13628944 13628944 C T PRPF18 5'UTR 0.22 TCGA-FD-A3SO-01 10 32097634 32097634 C A ARHGAP12 Missense_Mutation p.R770I 0.26 deleterious(0) benign(0.218) TCGA-FD-A3SO-01 10 46611776 46611776 C G PTPN20A Missense_Mutation p.D24H 0.54 deleterious(0.03) possibly_damaging(0.635) TCGA-FD-A3SO-01 10 49633961 49633961 A G MAPK8 Missense_Mutation p.Q240R 0.15 tolerated(0.27) benign(0.017) TCGA-FD-A3SO-01 10 49812981 49812981 C G ARHGAP22 5'UTR 0.38 TCGA-FD-A3SO-01 10 52619618 52619618 C G A1CF 5'UTR 0.24 TCGA-FD-A3SO-01 10 7262479 7262479 G A SFMBT2 Silent p.F408F 0.20 TCGA-FD-A3SO-01 10 73326687 73326687 C T CDH23 Silent p.N206N 0.14 TCGA-FD-A3SO-01 10 91487639 91487639 G C KIF20B Missense_Mutation p.E713Q 0.15 tolerated(0.2) benign(0.394) TCGA-FD-A3SO-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.15 TCGA-FD-A3SO-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.46 TCGA-FD-A3SO-01 10 99770957 99770957 G C CRTAC1 Silent p.L54L 0.30 TCGA-FD-A3SO-01 10 99969078 99969078 G C R3HCC1L Missense_Mutation p.D403H 0.29 deleterious(0.04) benign(0.178) TCGA-FD-A3SO-01 11 102098267 102098267 C T YAP1 Nonsense_Mutation p.R411* 0.29 TCGA-FD-A3SO-01 11 10540514 10540514 C G RNF141 Intron 0.31 TCGA-FD-A3SO-01 11 10789708 10789708 G A CTR9 Missense_Mutation p.G654R 0.23 deleterious(0) benign(0.338) TCGA-FD-A3SO-01 11 111430885 111430885 G A LAYN Missense_Mutation p.G284E 0.20 tolerated(1) benign(0.001) TCGA-FD-A3SO-01 11 123847570 123847570 G A OR10S1 Missense_Mutation p.R277C 0.29 tolerated(0.05) possibly_damaging(0.816) TCGA-FD-A3SO-01 11 126318913 126318913 C G KIRREL3 Missense_Mutation p.D330H 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 11 1586886 1586886 C G DUSP8 Silent p.R57R 0.30 TCGA-FD-A3SO-01 11 17112890 17112890 G A PIK3C2A Silent p.F1623F 0.23 TCGA-FD-A3SO-01 11 21581919 21581919 C T NELL1 Silent p.C657C 0.41 TCGA-FD-A3SO-01 11 28104452 28104452 C T KIF18A Missense_Mutation p.D405N 0.10 tolerated(0.64) benign(0.002) TCGA-FD-A3SO-01 11 43380573 43380573 C T TTC17 Silent p.L23L 0.36 TCGA-FD-A3SO-01 11 48238743 48238743 C G OR4B1 Missense_Mutation p.L128V 0.32 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SO-01 11 5537271 5537271 C G UBQLNL Missense_Mutation p.R134T 0.24 tolerated(0.37) benign(0) TCGA-FD-A3SO-01 11 55433227 55433227 C T OR4C6 Silent p.L195L 0.30 TCGA-FD-A3SO-01 11 5905783 5905783 C G OR52E4 Missense_Mutation p.F87L 0.27 deleterious(0.01) benign(0.033) TCGA-FD-A3SO-01 11 60154219 60154219 C T MS4A7 Silent p.I104I 0.32 TCGA-FD-A3SO-01 11 62378910 62378910 G A EML3 Missense_Mutation p.P61S 0.19 tolerated(0.62) benign(0.002) TCGA-FD-A3SO-01 11 64670063 64670063 G C ATG2A Silent p.L1234L 0.27 TCGA-FD-A3SO-01 11 67049290 67049290 C T ADRBK1 Intron 0.26 TCGA-FD-A3SO-01 11 67052909 67052909 C T ADRBK1 Silent p.A686A 0.29 TCGA-FD-A3SO-01 11 68029775 68029775 G A C11orf24 Missense_Mutation p.R230C 0.25 tolerated(0.19) benign(0.439) TCGA-FD-A3SO-01 11 68773667 68773667 C T MRGPRF Silent p.Q37Q 0.25 TCGA-FD-A3SO-01 11 76066699 76066699 C G PRKRIR Splice_Site p.X107_splice 0.27 TCGA-FD-A3SO-01 11 76795973 76795973 C T CAPN5 Missense_Mutation p.S14L 0.25 tolerated(0.28) benign(0.002) TCGA-FD-A3SO-01 11 83177748 83177748 C T DLG2 Intron 0.29 TCGA-FD-A3SO-01 11 85977176 85977176 C T EED Missense_Mutation p.L260F 0.35 deleterious(0.03) possibly_damaging(0.879) TCGA-FD-A3SO-01 11 94862842 94862842 T C ENDOD1 3'UTR 0.24 TCGA-FD-A3SO-01 11 96074933 96074933 G C MAML2 Missense_Mutation p.R43G 0.38 probably_damaging(0.913) TCGA-FD-A3SO-01 12 10587089 10587089 C T KLRC2 Silent p.Q109Q 0.12 TCGA-FD-A3SO-01 12 110468561 110468561 C T ANKRD13A Missense_Mutation p.S449L 0.41 tolerated(0.19) benign(0.004) TCGA-FD-A3SO-01 12 111296402 111296402 G C CCDC63 Missense_Mutation p.K64N 0.28 tolerated(0.12) benign(0.055) TCGA-FD-A3SO-01 12 11545793 11545793 G A PRB2 Nonsense_Mutation p.Q407* 0.15 TCGA-FD-A3SO-01 12 123789171 123789171 G C SBNO1 Silent p.L1242L 0.26 TCGA-FD-A3SO-01 12 12871794 12871794 G T CDKN1B Nonsense_Mutation p.E171* 0.54 TCGA-FD-A3SO-01 12 131471828 131471828 G A GPR133 Missense_Mutation p.E227K 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 12 133353621 133353621 C T GOLGA3 Missense_Mutation p.E1260K 0.36 tolerated(0.07) probably_damaging(0.963) TCGA-FD-A3SO-01 12 51389481 51389481 G C SLC11A2 Silent p.S336S 0.41 TCGA-FD-A3SO-01 12 53292539 53292539 C A KRT8 Nonsense_Mutation p.E404* 0.42 TCGA-FD-A3SO-01 12 53677939 53677939 G C ESPL1 Missense_Mutation p.E1059Q 0.37 deleterious(0.03) possibly_damaging(0.725) TCGA-FD-A3SO-01 12 55794872 55794872 G C OR6C65 Missense_Mutation p.C187S 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A3SO-01 12 55846882 55846882 G A OR6C2 Silent p.V295V 0.41 TCGA-FD-A3SO-01 12 7526237 7526237 C T CD163L1 Splice_Site p.X1137_splice 0.06 TCGA-FD-A3SO-01 12 9225252 9225252 G C A2M Silent p.L1324L 0.52 TCGA-FD-A3SO-01 12 93100662 93100662 G A C12orf74 Silent p.S85S 0.25 TCGA-FD-A3SO-01 13 108518877 108518877 C T FAM155A Missense_Mutation p.R23Q 0.29 deleterious(0) probably_damaging(0.99) TCGA-FD-A3SO-01 13 108861843 108861843 C T LIG4 Missense_Mutation p.E592K 0.31 deleterious(0.04) benign(0.04) TCGA-FD-A3SO-01 13 108959240 108959240 C T TNFSF13B Missense_Mutation p.S271L 0.28 deleterious(0) benign(0.045) TCGA-FD-A3SO-01 13 21217598 21217598 G A IFT88 Missense_Mutation p.E572K 0.20 deleterious(0) benign(0.142) TCGA-FD-A3SO-01 13 25016097 25016097 C G PARP4 Missense_Mutation p.E1185Q 0.21 deleterious(0) benign(0.119) TCGA-FD-A3SO-01 13 25876015 25876015 C T NUPL1 Missense_Mutation p.S35F 0.36 deleterious(0.04) unknown(0) TCGA-FD-A3SO-01 13 27827899 27827899 C T RPL21 Intron 0.13 TCGA-FD-A3SO-01 13 28127506 28127506 C T LNX2 Silent p.L539L 0.22 TCGA-FD-A3SO-01 13 30782761 30782761 C T KATNAL1 Silent p.L463L 0.30 TCGA-FD-A3SO-01 13 32376557 32376557 C T RXFP2 3'UTR 0.28 TCGA-FD-A3SO-01 13 46594682 46594682 G C ZC3H13 Nonsense_Mutation p.S117* 0.24 TCGA-FD-A3SO-01 13 48936983 48936983 C T RB1 Nonsense_Mutation p.R251* 0.26 TCGA-FD-A3SO-01 13 49047507 49047507 C G RB1 Nonsense_Mutation p.S834* 0.24 TCGA-FD-A3SO-01 13 84454070 84454070 C G SLITRK1 Missense_Mutation p.D525H 0.25 deleterious(0) probably_damaging(0.931) TCGA-FD-A3SO-01 13 92345940 92345940 C G GPC5 Silent p.L275L 0.07 TCGA-FD-A3SO-01 13 99114081 99114081 G A STK24 Missense_Mutation p.P346S 0.30 tolerated(0.26) benign(0.001) TCGA-FD-A3SO-01 14 104488586 104488586 C T TDRD9 Missense_Mutation p.S842L 0.27 deleterious(0.02) benign(0.011) TCGA-FD-A3SO-01 14 106815856 106815856 C T IGHV3-33 Missense_Mutation p.D73N 0.17 tolerated_low_confidence(0.27) benign(0.028) TCGA-FD-A3SO-01 14 45603667 45603667 C T FKBP3 5'UTR 0.25 TCGA-FD-A3SO-01 14 52485839 52485839 C T NID2 Missense_Mutation p.E990K 0.22 deleterious(0.02) benign(0.17) TCGA-FD-A3SO-01 14 66209049 66209049 C T FUT8 Missense_Mutation p.T550M 0.15 tolerated(0.12) benign(0.019) TCGA-FD-A3SO-01 14 75143291 75143291 G A AREL1 Missense_Mutation p.H216Y 0.18 tolerated(1) benign(0.001) TCGA-FD-A3SO-01 14 91805717 91805717 G A CCDC88C Silent p.P238P 0.17 TCGA-FD-A3SO-01 15 23049167 23049167 G A NIPA1 Missense_Mutation p.H218Y 0.29 deleterious(0.04) benign(0.001) TCGA-FD-A3SO-01 15 25446503 25446503 G C SNORD115-17 RNA 0.22 TCGA-FD-A3SO-01 15 25616710 25616710 G C UBE3A Nonsense_Mutation p.S207* 0.24 TCGA-FD-A3SO-01 15 28000526 28000526 G C OCA2 3'UTR 0.38 TCGA-FD-A3SO-01 15 30064302 30064302 G A TJP1 Nonsense_Mutation p.Q93* 0.30 TCGA-FD-A3SO-01 15 34064217 34064217 G A RYR3 Silent p.L2971L 0.24 TCGA-FD-A3SO-01 15 42703108 42703108 G C CAPN3 Missense_Mutation p.D764H 0.28 tolerated(0.05) benign(0.047) TCGA-FD-A3SO-01 15 43294862 43294862 G A UBR1 Missense_Mutation p.H1184Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SO-01 15 45884353 45884353 G A BLOC1S6 Missense_Mutation p.D35N 0.29 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-FD-A3SO-01 15 49048212 49048212 G A CEP152 Missense_Mutation p.S1078F 0.29 deleterious(0.04) benign(0.272) TCGA-FD-A3SO-01 15 63029226 63029226 G C TLN2 Missense_Mutation p.E1170Q 0.23 tolerated(0.05) benign(0.288) TCGA-FD-A3SO-01 15 64067826 64067826 G A HERC1 5'UTR 0.26 TCGA-FD-A3SO-01 15 65983618 65983618 C T DENND4A Missense_Mutation p.G1104E 0.14 deleterious(0) probably_damaging(0.984) TCGA-FD-A3SO-01 15 69721528 69721528 G A KIF23 Missense_Mutation p.E350K 0.40 tolerated(0.08) possibly_damaging(0.771) TCGA-FD-A3SO-01 15 69737198 69737198 G A KIF23 Missense_Mutation p.D817N 0.14 tolerated(0.06) benign(0.044) TCGA-FD-A3SO-01 15 73004593 73004593 C G BBS4 Missense_Mutation p.I55M 0.18 deleterious(0) possibly_damaging(0.863) TCGA-FD-A3SO-01 15 90119340 90119340 G A TICRR Missense_Mutation p.E175K 0.20 tolerated(0.08) benign(0.239) TCGA-FD-A3SO-01 15 98514445 98514445 C T ARRDC4 3'UTR 0.30 TCGA-FD-A3SO-01 16 20748171 20748171 G C THUMPD1 Intron 0.15 TCGA-FD-A3SO-01 16 21979946 21979946 C A UQCRC2 Intron 0.21 TCGA-FD-A3SO-01 16 22319516 22319516 C G POLR3E Silent p.L45L 0.19 TCGA-FD-A3SO-01 16 23713758 23713758 C G ERN2 Missense_Mutation p.R393T 0.29 tolerated(0.05) possibly_damaging(0.798) TCGA-FD-A3SO-01 16 2983500 2983500 G A FLYWCH1 Missense_Mutation p.R388K 0.38 tolerated(0.09) benign(0.086) TCGA-FD-A3SO-01 16 30506048 30506048 C T ITGAL Silent p.F460F 0.30 TCGA-FD-A3SO-01 16 30767535 30767535 G C PHKG2 Missense_Mutation p.E197Q 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 16 30768614 30768614 G C PHKG2 3'UTR 0.27 TCGA-FD-A3SO-01 16 30768684 30768684 G A PHKG2 3'UTR 0.28 TCGA-FD-A3SO-01 16 75513367 75513367 G C CHST6 Silent p.L120L 0.44 TCGA-FD-A3SO-01 16 77375607 77375607 C G ADAMTS18 Missense_Mutation p.L568F 0.25 tolerated(0.7) benign(0.002) TCGA-FD-A3SO-01 17 10419630 10419630 G A MYH1 Silent p.F78F 0.10 TCGA-FD-A3SO-01 17 1747276 1747276 A T RPA1 Silent p.G49G 0.19 TCGA-FD-A3SO-01 17 1780584 1780584 C T RPA1 Silent p.F222F 0.24 TCGA-FD-A3SO-01 17 26731743 26731743 G C SLC46A1 Silent p.L324L 0.30 TCGA-FD-A3SO-01 17 26732064 26732064 G A SLC46A1 Silent p.A217A 0.20 TCGA-FD-A3SO-01 17 2861064 2861064 C G RAP1GAP2 Missense_Mutation p.F59L 0.30 tolerated(0.57) benign(0.039) TCGA-FD-A3SO-01 17 29226414 29226414 C T TEFM Missense_Mutation p.E286K 0.32 tolerated(0.22) benign(0.006) TCGA-FD-A3SO-01 17 32959762 32959762 G C TMEM132E Missense_Mutation p.E418Q 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A3SO-01 17 33463472 33463472 G A NLE1 Silent p.N291N 0.20 TCGA-FD-A3SO-01 17 39671846 39671846 C T KRT15 Silent p.L375L 0.33 TCGA-FD-A3SO-01 17 39673157 39673157 C T KRT15 Missense_Mutation p.R214Q 0.33 deleterious(0) probably_damaging(0.958) TCGA-FD-A3SO-01 17 40723603 40723603 G A MLX Silent p.L293L 0.30 TCGA-FD-A3SO-01 17 40933043 40933043 G A WNK4 Silent p.T109T 0.23 TCGA-FD-A3SO-01 17 4701743 4701743 G C PSMB6 3'UTR 0.24 TCGA-FD-A3SO-01 17 48696036 48696036 C T CACNA1G Silent p.D1816D 0.12 TCGA-FD-A3SO-01 17 56233150 56233150 C T OR4D1 Silent p.L212L 0.32 TCGA-FD-A3SO-01 17 61514723 61514723 G T CYB561 Silent p.I62I 0.25 TCGA-FD-A3SO-01 17 62864606 62864606 G A LRRC37A3 Silent p.L1009L 0.26 TCGA-FD-A3SO-01 17 62865241 62865241 G C LRRC37A3 Missense_Mutation p.L984V 0.24 deleterious(0) probably_damaging(0.974) TCGA-FD-A3SO-01 17 6663026 6663026 G C XAF1 Missense_Mutation p.E72Q 0.19 deleterious(0.04) benign(0.164) TCGA-FD-A3SO-01 17 67145021 67145021 C T ABCA10 Missense_Mutation p.D1527N 0.21 tolerated(0.11) benign(0.022) TCGA-FD-A3SO-01 17 7369149 7369149 C G ZBTB4 Silent p.L324L 0.38 TCGA-FD-A3SO-01 17 73895341 73895341 C G MRPL38 Missense_Mutation p.D302H 0.26 deleterious(0.01) possibly_damaging(0.489) TCGA-FD-A3SO-01 17 7577511 7577511 A T TP53 Missense_Mutation p.L257Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 17 7579529 7579529 C T TP53 Nonsense_Mutation p.W53* 0.27 TCGA-FD-A3SO-01 17 76498092 76498092 G A DNAH17-AS1 3'UTR 0.31 TCGA-FD-A3SO-01 17 78314035 78314035 C T RNF213 Silent p.L1956L 0.25 TCGA-FD-A3SO-01 17 79092188 79092188 G A AATK 3'UTR 0.31 TCGA-FD-A3SO-01 17 79667810 79667810 C T HGS Missense_Mutation p.S701L 0.27 deleterious(0.04) benign(0.01) TCGA-FD-A3SO-01 17 80223668 80223668 C T CSNK1D Silent p.T27T 0.33 TCGA-FD-A3SO-01 17 80373478 80373478 C T OGFOD3 Missense_Mutation p.E34K 0.38 tolerated(0.15) benign(0.023) TCGA-FD-A3SO-01 18 19995517 19995517 G C CTAGE1 3'UTR 0.28 TCGA-FD-A3SO-01 18 23915183 23915183 G A TAF4B Silent p.Q768Q 0.24 TCGA-FD-A3SO-01 18 30350474 30350474 C A KLHL14 Missense_Mutation p.W27C 0.50 deleterious(0.04) probably_damaging(0.98) TCGA-FD-A3SO-01 18 55368464 55368464 C T ATP8B1 Missense_Mutation p.D159N 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 18 627295 627295 G C CLUL1 Missense_Mutation p.E208Q 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-FD-A3SO-01 18 6966276 6966276 G A LAMA1 Missense_Mutation p.S2307F 0.29 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SO-01 18 8825631 8825631 G A SOGA2 Missense_Mutation p.E1375K 0.32 deleterious(0) probably_damaging(0.969) TCGA-FD-A3SO-01 19 11489167 11489167 C T EPOR Silent p.G340G 0.41 TCGA-FD-A3SO-01 19 11890831 11890831 C A ZNF441 Intron 0.27 TCGA-FD-A3SO-01 19 11890924 11890924 G A ZNF441 Silent p.E95E 0.27 TCGA-FD-A3SO-01 19 12997900 12997900 G A KLF1 Missense_Mutation p.P19S 0.37 tolerated(0.16) benign(0.009) TCGA-FD-A3SO-01 19 1487786 1487786 G A PCSK4 Silent p.N197N 0.67 TCGA-FD-A3SO-01 19 1508069 1508069 C T ADAMTSL5 Missense_Mutation p.E177K 0.35 tolerated(0.16) benign(0.043) TCGA-FD-A3SO-01 19 15512157 15512157 G A AKAP8L Missense_Mutation p.A207V 0.19 tolerated(0.06) probably_damaging(0.918) TCGA-FD-A3SO-01 19 1785612 1785612 G A ATP8B3 Silent p.I1083I 0.38 TCGA-FD-A3SO-01 19 18174783 18174783 G A IL12RB1 Silent p.L507L 0.29 TCGA-FD-A3SO-01 19 18545632 18545632 G C ISYNA1 3'UTR 0.20 TCGA-FD-A3SO-01 19 20044424 20044424 G C ZNF93 Missense_Mutation p.K220N 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-FD-A3SO-01 19 22271978 22271978 C G ZNF257 Missense_Mutation p.Q476E 0.33 tolerated(0.34) benign(0.001) TCGA-FD-A3SO-01 19 36135582 36135582 G C ETV2 Missense_Mutation p.R286T 0.18 deleterious(0) possibly_damaging(0.901) TCGA-FD-A3SO-01 19 36206116 36206116 C T ZBTB32 Silent p.L196L 0.29 TCGA-FD-A3SO-01 19 43236942 43236942 G C PSG3 Missense_Mutation p.L235V 0.26 tolerated(1) benign(0.1) TCGA-FD-A3SO-01 19 49445720 49445720 C T DHDH Missense_Mutation p.L215F 0.21 deleterious(0.02) benign(0.213) TCGA-FD-A3SO-01 19 52448420 52448420 T C ZNF613 Silent p.Y428Y 0.48 TCGA-FD-A3SO-01 19 53611571 53611571 C G ZNF415 3'UTR 0.32 TCGA-FD-A3SO-01 19 54545036 54545036 G A VSTM1 Silent p.L196L 0.33 TCGA-FD-A3SO-01 19 54649696 54649696 G A CNOT3 Missense_Mutation p.E252K 0.39 tolerated(0.09) possibly_damaging(0.633) TCGA-FD-A3SO-01 19 55098485 55098485 G A LILRA2 Missense_Mutation p.E422K 0.47 tolerated(0.63) benign(0.005) TCGA-FD-A3SO-01 19 57911010 57911010 G A ZNF548 Missense_Mutation p.R464K 0.35 tolerated(0.05) benign(0.085) TCGA-FD-A3SO-01 19 59012064 59012064 C T SLC27A5 Missense_Mutation p.D398N 0.40 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 19 6678241 6678241 C T C3 Missense_Mutation p.R1591K 0.34 tolerated(0.14) possibly_damaging(0.527) TCGA-FD-A3SO-01 19 9057637 9057637 C T MUC16 Missense_Mutation p.E9937K 0.37 unknown(0) TCGA-FD-A3SO-01 1 100358047 100358047 G T AGL Missense_Mutation p.C1048F 0.27 tolerated(0.07) probably_damaging(0.958) TCGA-FD-A3SO-01 1 100614274 100614274 C T TRMT13 Silent p.F448F 0.19 TCGA-FD-A3SO-01 1 101343047 101343047 C T EXTL2 Missense_Mutation p.E140K 0.20 deleterious(0) possibly_damaging(0.907) TCGA-FD-A3SO-01 1 111216259 111216259 C G KCNA3 Silent p.L391L 0.25 TCGA-FD-A3SO-01 1 114380755 114380755 C T PTPN22 Missense_Mutation p.E423K 0.27 tolerated(0.62) benign(0.096) TCGA-FD-A3SO-01 1 119962079 119962079 G C HSD3B2 Missense_Mutation p.D61H 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 1 119965133 119965133 C G HSD3B2 Missense_Mutation p.L337V 0.23 deleterious(0.01) possibly_damaging(0.844) TCGA-FD-A3SO-01 1 120056980 120056980 C T HSD3B1 Silent p.L278L 0.05 TCGA-FD-A3SO-01 1 120438233 120438233 C T ADAM30 Missense_Mutation p.D243N 0.24 deleterious(0.03) possibly_damaging(0.83) TCGA-FD-A3SO-01 1 144857639 144857639 C G PDE4DIP Missense_Mutation p.E2139Q 0.04 tolerated(0.09) benign(0.023) TCGA-FD-A3SO-01 1 145439622 145439622 G A TXNIP Missense_Mutation p.G94R 0.22 deleterious(0) probably_damaging(0.974) TCGA-FD-A3SO-01 1 145567755 145567755 G A ANKRD35 Silent p.%3D 0.24 TCGA-FD-A3SO-01 1 148594697 148594697 G A NBPF15 3'UTR 0.25 TCGA-FD-A3SO-01 1 150484937 150484937 G A ECM1 Missense_Mutation p.R425H 0.18 tolerated(0.13) benign(0.008) TCGA-FD-A3SO-01 1 150972348 150972348 G A FAM63A Silent p.L324L 0.16 TCGA-FD-A3SO-01 1 155181948 155181948 C T MTX1 Missense_Mutation p.R237W 0.08 tolerated(0.05) benign(0.043) TCGA-FD-A3SO-01 1 155340407 155340407 C T ASH1L Missense_Mutation p.D2192N 0.18 tolerated_low_confidence(0.22) possibly_damaging(0.543) TCGA-FD-A3SO-01 1 155582954 155582954 G A MSTO1 Missense_Mutation p.E405K 0.18 tolerated(0.05) benign(0.06) TCGA-FD-A3SO-01 1 155784175 155784175 C G GON4L Missense_Mutation p.L409F 0.18 tolerated(0.12) possibly_damaging(0.765) TCGA-FD-A3SO-01 1 157105486 157105486 C T ETV3 Missense_Mutation p.D21N 0.24 tolerated(0.06) benign(0.013) TCGA-FD-A3SO-01 1 158647509 158647509 C T SPTA1 Missense_Mutation p.E310K 0.33 deleterious(0.02) benign(0.232) TCGA-FD-A3SO-01 1 160097482 160097482 G A ATP1A2 Missense_Mutation p.A297T 0.19 deleterious(0) probably_damaging(0.978) TCGA-FD-A3SO-01 1 167798547 167798547 C T ADCY10 Missense_Mutation p.M1236I 0.21 tolerated(0.07) benign(0.003) TCGA-FD-A3SO-01 1 171083364 171083364 G A FMO3 Missense_Mutation p.E349K 0.30 tolerated(0.83) benign(0.181) TCGA-FD-A3SO-01 1 173455466 173455466 G A PRDX6 Missense_Mutation p.D158N 0.23 tolerated(0.11) benign(0.198) TCGA-FD-A3SO-01 1 173952637 173952637 G C RC3H1 Missense_Mutation p.L171V 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A3SO-01 1 176833621 176833621 G C ASTN1 Silent p.L1228L 0.24 TCGA-FD-A3SO-01 1 183599601 183599601 C T ARPC5 Missense_Mutation p.E133K 0.19 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SO-01 1 183853908 183853908 C T RGL1 Nonsense_Mutation p.R298* 0.24 TCGA-FD-A3SO-01 1 183920242 183920242 G A COLGALT2 Silent p.F345F 0.38 TCGA-FD-A3SO-01 1 186281364 186281364 G A PRG4 Missense_Mutation p.R1284K 0.44 unknown(0) TCGA-FD-A3SO-01 1 186313156 186313156 G C TPR Missense_Mutation p.Q1162E 0.19 benign(0.149) TCGA-FD-A3SO-01 1 196397285 196397285 C G KCNT2 Missense_Mutation p.D312H 0.20 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 1 196928035 196928035 T C CFHR2 Missense_Mutation p.I213T 0.20 tolerated(0.36) benign(0.075) TCGA-FD-A3SO-01 1 203191375 203191375 G C CHIT1 Silent p.L228L 0.25 TCGA-FD-A3SO-01 1 203693083 203693083 C T ATP2B4 Silent p.L1033L 0.19 TCGA-FD-A3SO-01 1 206759954 206759954 G T RASSF5 Intron 0.44 TCGA-FD-A3SO-01 1 206759967 206759967 G A RASSF5 Intron 0.42 TCGA-FD-A3SO-01 1 223285449 223285449 C T TLR5 Missense_Mutation p.E309K 0.45 tolerated(0.32) benign(0.007) TCGA-FD-A3SO-01 1 224577492 224577492 G A WDR26 3'UTR 0.21 TCGA-FD-A3SO-01 1 226566910 226566910 C G PARP1 Missense_Mutation p.V560L 0.34 deleterious(0.01) possibly_damaging(0.843) TCGA-FD-A3SO-01 1 236908074 236908074 C G ACTN2 Silent p.L468L 0.19 TCGA-FD-A3SO-01 1 2419057 2419057 G A PLCH2 Missense_Mutation p.D352N 0.13 tolerated(0.08) probably_damaging(0.969) TCGA-FD-A3SO-01 1 247265040 247265040 C G ZNF669 Missense_Mutation p.D148H 0.16 tolerated(0.05) benign(0.043) TCGA-FD-A3SO-01 1 247920938 247920938 G A OR1C1 Silent p.A257A 0.32 TCGA-FD-A3SO-01 1 248308805 248308805 C G OR2M5 Missense_Mutation p.S119C 0.24 deleterious(0) benign(0.443) TCGA-FD-A3SO-01 1 25729193 25729193 G A RHCE Missense_Mutation p.A127V 0.41 tolerated(0.44) benign(0.012) TCGA-FD-A3SO-01 1 39824382 39824382 G C MACF1 Missense_Mutation p.G1924A 0.30 possibly_damaging(0.839) TCGA-FD-A3SO-01 1 39824525 39824525 G C MACF1 Missense_Mutation p.E1972Q 0.25 benign(0.001) TCGA-FD-A3SO-01 1 39824885 39824885 G A MACF1 Missense_Mutation p.E2003K 0.19 benign(0.138) TCGA-FD-A3SO-01 1 40737653 40737653 G A ZMPSTE24 Missense_Mutation p.E239K 0.16 deleterious(0.01) benign(0.292) TCGA-FD-A3SO-01 1 44424184 44424184 C T IPO13 Missense_Mutation p.L601F 0.08 deleterious(0.01) probably_damaging(0.937) TCGA-FD-A3SO-01 1 47904362 47904362 C G FOXD2 Missense_Mutation p.F185L 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 1 62263049 62263049 C T INADL Nonsense_Mutation p.R451* 0.28 TCGA-FD-A3SO-01 1 66834533 66834533 C T PDE4B Missense_Mutation p.R576W 0.18 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SO-01 1 67890585 67890585 G A SERBP1 Silent p.V227V 0.36 TCGA-FD-A3SO-01 1 70504079 70504079 C T LRRC7 Missense_Mutation p.P820S 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FD-A3SO-01 1 89735197 89735197 G A GBP5 Silent p.I14I 0.25 TCGA-FD-A3SO-01 1 92459724 92459724 C T BRDT Missense_Mutation p.H734Y 0.18 tolerated(0.49) benign(0.418) TCGA-FD-A3SO-01 1 94343201 94343201 G A DNTTIP2 Missense_Mutation p.S97F 0.21 tolerated(0.72) benign(0.048) TCGA-FD-A3SO-01 20 16719545 16719545 C A SNRPB2 Missense_Mutation p.Q143K 0.26 tolerated(0.78) benign(0.065) TCGA-FD-A3SO-01 20 20563711 20563711 T A RALGAPA2 Missense_Mutation p.D897V 0.37 deleterious(0) benign(0.206) TCGA-FD-A3SO-01 20 31024321 31024321 C T ASXL1 Missense_Mutation p.S1269L 0.24 deleterious(0.02) probably_damaging(0.978) TCGA-FD-A3SO-01 20 35310978 35310978 C T NDRG3 Silent p.L129L 0.43 TCGA-FD-A3SO-01 20 37524349 37524349 C T PPP1R16B Nonsense_Mutation p.Q155* 0.34 TCGA-FD-A3SO-01 20 43850441 43850441 T C SEMG2 Silent p.H56H 0.23 TCGA-FD-A3SO-01 20 45905461 45905461 G C ZMYND8 Missense_Mutation p.F359L 0.14 tolerated(0.16) benign(0.011) TCGA-FD-A3SO-01 20 50140650 50140650 C T NFATC2 Splice_Site p.X44_splice 0.29 TCGA-FD-A3SO-01 20 55909876 55909876 G C SPO11 Missense_Mutation p.C194S 0.24 deleterious(0) probably_damaging(0.992) TCGA-FD-A3SO-01 20 58467098 58467098 C T SYCP2 Missense_Mutation p.E771K 0.30 tolerated(0.89) benign(0.033) TCGA-FD-A3SO-01 20 5903125 5903125 T C CHGB Missense_Mutation p.I112T 0.30 tolerated(0.9) benign(0) TCGA-FD-A3SO-01 20 60878723 60878723 G A ADRM1 Silent p.L33L 0.31 TCGA-FD-A3SO-01 20 61513083 61513083 C T DIDO1 Missense_Mutation p.E1409K 0.37 benign(0.114) TCGA-FD-A3SO-01 20 61991019 61991019 C T CHRNA4 Missense_Mutation p.E37K 0.28 deleterious(0) possibly_damaging(0.853) TCGA-FD-A3SO-01 20 62273466 62273466 C G STMN3 Missense_Mutation p.E160Q 0.17 deleterious(0.02) benign(0.245) TCGA-FD-A3SO-01 20 62275132 62275132 C G STMN3 Missense_Mutation p.E90Q 0.27 deleterious(0.03) possibly_damaging(0.644) TCGA-FD-A3SO-01 21 28302318 28302318 C T ADAMTS5 Silent p.V704V 0.38 TCGA-FD-A3SO-01 21 34804515 34804515 C G IFNGR2 Nonsense_Mutation p.S198* 0.08 TCGA-FD-A3SO-01 22 17601328 17601328 C T CECR6 Nonsense_Mutation p.W230* 0.33 TCGA-FD-A3SO-01 22 30057257 30057257 G T NF2 Nonsense_Mutation p.E247* 0.47 TCGA-FD-A3SO-01 22 41564578 41564580 GAA - EP300 In_Frame_Del p.E1334del 0.24 TCGA-FD-A3SO-01 22 43627846 43627846 C T SCUBE1 Missense_Mutation p.D294N 0.19 deleterious(0.02) benign(0.322) TCGA-FD-A3SO-01 2 101656805 101656805 G A TBC1D8 Silent p.F290F 0.24 TCGA-FD-A3SO-01 2 108496500 108496500 T A RGPD4 Missense_Mutation p.D1667E 0.22 tolerated_low_confidence(0.23) benign(0) TCGA-FD-A3SO-01 2 113763586 113763586 C A IL36A Missense_Mutation p.Q16K 0.39 tolerated(0.16) benign(0.052) TCGA-FD-A3SO-01 2 120844814 120844814 C G EPB41L5 Missense_Mutation p.Q291E 0.16 tolerated(0.1) benign(0.102) TCGA-FD-A3SO-01 2 131521644 131521644 C G AMER3 Missense_Mutation p.L667V 0.28 tolerated(0.06) benign(0.091) TCGA-FD-A3SO-01 2 141816461 141816461 G C LRP1B Missense_Mutation p.Q467E 0.19 benign(0.052) TCGA-FD-A3SO-01 2 1460027 1460027 G A TPO Silent p.E264E 0.18 TCGA-FD-A3SO-01 2 153591519 153591519 C G ARL6IP6 Missense_Mutation p.L156V 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A3SO-01 2 159195330 159195330 C G CCDC148 Missense_Mutation p.L224F 0.26 deleterious(0) probably_damaging(0.934) TCGA-FD-A3SO-01 2 160824175 160824175 C T PLA2R1 Missense_Mutation p.E927K 0.16 tolerated(0.27) benign(0.098) TCGA-FD-A3SO-01 2 163076436 163076436 C G FAP Splice_Site p.X138_splice 0.35 TCGA-FD-A3SO-01 2 165956858 165956858 C G SCN3A Missense_Mutation p.R1307T 0.09 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 2 166243479 166243479 T C SCN2A Missense_Mutation p.I1592T 0.20 tolerated(0.39) benign(0.419) TCGA-FD-A3SO-01 2 166901813 166901813 C G SCN1A Missense_Mutation p.E468Q 0.06 tolerated(0.55) benign(0.013) TCGA-FD-A3SO-01 2 178528629 178528629 C A PDE11A Nonsense_Mutation p.E871* 0.20 TCGA-FD-A3SO-01 2 178545621 178545621 C G PDE11A Missense_Mutation p.E786Q 0.14 tolerated(0.55) benign(0.227) TCGA-FD-A3SO-01 2 179596906 179596906 G C TTN Missense_Mutation p.S5597C 0.28 TCGA-FD-A3SO-01 2 190541406 190541406 C G ANKAR Missense_Mutation p.Q64E 0.22 tolerated(0.35) benign(0.05) TCGA-FD-A3SO-01 2 197870475 197870475 C T ANKRD44 Missense_Mutation p.D739N 0.07 tolerated(0.33) benign(0.373) TCGA-FD-A3SO-01 2 200137286 200137286 G A SATB2 Missense_Mutation p.S617F 0.25 deleterious(0.01) benign(0.188) TCGA-FD-A3SO-01 2 204244965 204244965 G A ABI2 Missense_Mutation p.R107K 0.25 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 2 209190134 209190134 C G PIKFYVE Missense_Mutation p.Q867E 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-FD-A3SO-01 2 209307167 209307167 C G PTH2R Missense_Mutation p.L164V 0.29 tolerated(0.21) benign(0.012) TCGA-FD-A3SO-01 2 210558518 210558518 G T MAP2 Missense_Mutation p.D542Y 0.29 deleterious_low_confidence(0.02) benign(0.012) TCGA-FD-A3SO-01 2 219000665 219000665 C G CXCR2 3'UTR 0.18 TCGA-FD-A3SO-01 2 220039607 220039607 A G CNPPD1 Missense_Mutation p.Y135H 0.31 tolerated(0.06) possibly_damaging(0.907) TCGA-FD-A3SO-01 2 222347094 222347094 G A EPHA4 Silent p.V432V 0.06 TCGA-FD-A3SO-01 2 233274450 233274450 C G ALPPL2 Silent p.P489P 0.31 TCGA-FD-A3SO-01 2 234102561 234102561 G C INPP5D Missense_Mutation p.E838D 0.23 tolerated(0.3) possibly_damaging(0.492) TCGA-FD-A3SO-01 2 234429685 234429685 C G USP40 Missense_Mutation p.Q770H 0.25 deleterious(0.03) benign(0.094) TCGA-FD-A3SO-01 2 26424095 26424095 C G HADHA Missense_Mutation p.E439Q 0.29 tolerated(0.13) possibly_damaging(0.477) TCGA-FD-A3SO-01 2 26486347 26486347 C T HADHB Missense_Mutation p.S70L 0.22 tolerated(0.35) benign(0.003) TCGA-FD-A3SO-01 2 30457350 30457350 C T LBH Missense_Mutation p.R36C 0.23 tolerated(0.06) probably_damaging(0.97) TCGA-FD-A3SO-01 2 37513430 37513430 C G PRKD3 Missense_Mutation p.R267T 0.26 deleterious(0.01) benign(0.412) TCGA-FD-A3SO-01 2 37513444 37513444 C A PRKD3 Missense_Mutation p.K262N 0.21 tolerated(0.11) probably_damaging(0.918) TCGA-FD-A3SO-01 2 37513484 37513486 CTC TT PRKD3 Frame_Shift_Del p.R249Kfs*16 0.13 TCGA-FD-A3SO-01 2 44170868 44170868 G A LRPPRC Missense_Mutation p.S821F 0.22 deleterious(0) possibly_damaging(0.823) TCGA-FD-A3SO-01 2 61622361 61622361 G A USP34 Missense_Mutation p.S187L 0.35 deleterious(0) possibly_damaging(0.644) TCGA-FD-A3SO-01 2 63349172 63349172 G A WDPCP Missense_Mutation p.S737F 0.19 deleterious(0.01) possibly_damaging(0.502) TCGA-FD-A3SO-01 2 71189911 71189911 G A ATP6V1B1 Missense_Mutation p.E264K 0.14 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SO-01 2 71892289 71892289 C T DYSF Intron 0.26 TCGA-FD-A3SO-01 2 74725261 74725261 G A LBX2 Silent p.V126V 0.29 TCGA-FD-A3SO-01 2 85893860 85893860 C T SFTPB Silent p.T103T 0.28 TCGA-FD-A3SO-01 2 97365429 97365429 C T FER1L5 RNA 0.32 TCGA-FD-A3SO-01 2 98382950 98382950 T C TMEM131 Missense_Mutation p.K1522E 0.23 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FD-A3SO-01 3 101476575 101476575 G A CEP97 Silent p.T375T 0.24 TCGA-FD-A3SO-01 3 10960123 10960123 G A SLC6A11 Missense_Mutation p.E369K 0.23 tolerated(0.19) possibly_damaging(0.699) TCGA-FD-A3SO-01 3 113098284 113098284 G A WDR52 Nonsense_Mutation p.Q723* 0.30 TCGA-FD-A3SO-01 3 118647366 118647366 G A IGSF11 Silent p.L138L 0.25 TCGA-FD-A3SO-01 3 120114625 120114625 C T FSTL1 3'UTR 0.31 TCGA-FD-A3SO-01 3 121414111 121414111 C T GOLGB1 Silent p.E1753E 0.29 TCGA-FD-A3SO-01 3 125649405 125649405 G C ALG1L Missense_Mutation p.L115V 0.34 deleterious(0) possibly_damaging(0.903) TCGA-FD-A3SO-01 3 126201185 126201185 C G UROC1 3'UTR 0.19 TCGA-FD-A3SO-01 3 129373852 129373852 T A TMCC1 Nonsense_Mutation p.K536* 0.25 TCGA-FD-A3SO-01 3 14563188 14563188 C T GRIP2 RNA 0.40 TCGA-FD-A3SO-01 3 151163897 151163897 A T IGSF10 Missense_Mutation p.F1291Y 0.30 tolerated(0.23) benign(0.151) TCGA-FD-A3SO-01 3 153870637 153870637 C G ARHGEF26 Missense_Mutation p.S468C 0.38 deleterious(0.02) benign(0.098) TCGA-FD-A3SO-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-FD-A3SO-01 3 184103022 184103022 C T CHRD Missense_Mutation p.S605L 0.22 deleterious(0.04) benign(0.312) TCGA-FD-A3SO-01 3 42632421 42632421 G C SS18L2 Missense_Mutation p.R11T 0.20 deleterious(0.03) possibly_damaging(0.568) TCGA-FD-A3SO-01 3 42680599 42680599 G C NKTR Missense_Mutation p.D1135H 0.31 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-FD-A3SO-01 3 42727254 42727254 C T KLHL40 Silent p.R48R 0.19 TCGA-FD-A3SO-01 3 44497005 44497005 G C ZNF445 Missense_Mutation p.Q13E 0.10 deleterious_low_confidence(0.01) benign(0.042) TCGA-FD-A3SO-01 3 44683588 44683588 G A ZNF197 Silent p.K322K 0.33 TCGA-FD-A3SO-01 3 44685716 44685716 C G ZNF197 3'UTR 0.29 TCGA-FD-A3SO-01 3 47385224 47385224 G C KLHL18 Silent p.L506L 0.22 TCGA-FD-A3SO-01 3 47951061 47951061 G A MAP4 Intron 0.27 TCGA-FD-A3SO-01 3 48665891 48665891 C T SLC26A6 Silent p.Q592Q 0.28 TCGA-FD-A3SO-01 3 49397643 49397643 C T RHOA Silent p.%3D 0.26 TCGA-FD-A3SO-01 3 49397721 49397721 C G RHOA Missense_Mutation p.R168T 0.27 deleterious(0.02) possibly_damaging(0.809) TCGA-FD-A3SO-01 3 51994209 51994209 C T PCBP4 Missense_Mutation p.R128Q 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-FD-A3SO-01 3 52692314 52692314 C G PBRM1 Missense_Mutation p.L182F 0.07 deleterious(0.04) possibly_damaging(0.775) TCGA-FD-A3SO-01 3 52858879 52858879 C T ITIH4 Missense_Mutation p.M285I 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 3 53215603 53215603 G T PRKCD Missense_Mutation p.V174L 0.24 tolerated(1) probably_damaging(0.999) TCGA-FD-A3SO-01 3 72799265 72799265 C T SHQ1 3'UTR 0.33 TCGA-FD-A3SO-01 3 98538214 98538214 G A DCBLD2 Nonsense_Mutation p.Q307* 0.41 TCGA-FD-A3SO-01 4 123814162 123814162 C T NUDT6 Missense_Mutation p.E258K 0.10 tolerated(0.69) benign(0.012) TCGA-FD-A3SO-01 4 183714402 183714402 G A TENM3 Missense_Mutation p.E2193K 0.31 deleterious(0.01) possibly_damaging(0.636) TCGA-FD-A3SO-01 4 186185662 186185662 C G SNX25 Missense_Mutation p.L104V 0.39 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SO-01 4 186997899 186997899 G A TLR3 Silent p.L42L 0.08 TCGA-FD-A3SO-01 4 1977056 1977056 C T WHSC1 Silent p.L1184L 0.43 TCGA-FD-A3SO-01 4 1991499 1991499 C T NELFA Silent p.V171V 0.34 TCGA-FD-A3SO-01 4 2238161 2238161 C G HAUS3 Missense_Mutation p.E458Q 0.38 deleterious(0.03) benign(0.209) TCGA-FD-A3SO-01 4 4322918 4322918 G A ZBTB49 Missense_Mutation p.D725N 0.44 tolerated(0.15) benign(0.287) TCGA-FD-A3SO-01 4 6711276 6711276 G A MRFAP1L1 Silent p.F27F 0.40 TCGA-FD-A3SO-01 4 7016174 7016174 G A TBC1D14 Splice_Site p.X550_splice 0.36 TCGA-FD-A3SO-01 4 79229280 79229280 G C FRAS1 Missense_Mutation p.R532T 0.31 benign(0.045) TCGA-FD-A3SO-01 5 10235356 10235356 G T FAM173B Nonsense_Mutation p.Y154* 0.14 TCGA-FD-A3SO-01 5 126214081 126214081 C T MARCH3 Silent p.L133L 0.29 TCGA-FD-A3SO-01 5 132270153 132270153 G A AFF4 Missense_Mutation p.H202Y 0.22 tolerated(0.23) probably_damaging(0.989) TCGA-FD-A3SO-01 5 140558545 140558545 C T PCDHB8 Silent p.F310F 0.10 TCGA-FD-A3SO-01 5 140682702 140682702 C T SLC25A2 Missense_Mutation p.G244E 0.29 deleterious(0.04) possibly_damaging(0.521) TCGA-FD-A3SO-01 5 143853407 143853407 C G KCTD16 Missense_Mutation p.I339M 0.22 tolerated(0.09) possibly_damaging(0.483) TCGA-FD-A3SO-01 5 150924410 150924410 G T FAT2 Missense_Mutation p.S2093Y 0.27 probably_damaging(0.943) TCGA-FD-A3SO-01 5 167689355 167689355 T C TENM2 Missense_Mutation p.V2622A 0.31 deleterious(0) possibly_damaging(0.777) TCGA-FD-A3SO-01 5 176396246 176396246 G C UIMC1 Missense_Mutation p.I170M 0.08 tolerated(0.13) possibly_damaging(0.672) TCGA-FD-A3SO-01 5 176868939 176868939 C T GRK6 3'UTR 0.50 TCGA-FD-A3SO-01 5 177658513 177658513 C G PHYKPL Missense_Mutation p.R24T 0.25 tolerated(0.2) benign(0.002) TCGA-FD-A3SO-01 5 178391653 178391653 C T ZNF454 Intron 0.25 TCGA-FD-A3SO-01 5 179264318 179264318 C G SQSTM1 3'UTR 0.21 TCGA-FD-A3SO-01 5 179264605 179264605 C G C5orf45 Missense_Mutation p.R273T 0.32 tolerated(0.07) benign(0.234) TCGA-FD-A3SO-01 5 26890543 26890543 C T CDH9 Missense_Mutation p.E462K 0.14 tolerated(0.11) probably_damaging(0.995) TCGA-FD-A3SO-01 5 33596062 33596062 G T ADAMTS12 Nonsense_Mutation p.C877* 0.13 TCGA-FD-A3SO-01 5 35957426 35957426 G C UGT3A1 Silent p.L313L 0.06 TCGA-FD-A3SO-01 5 3600251 3600251 C T IRX1 Missense_Mutation p.P397S 0.15 tolerated(0.49) benign(0.133) TCGA-FD-A3SO-01 5 36265595 36265595 G C RANBP3L Nonsense_Mutation p.S124* 0.19 TCGA-FD-A3SO-01 5 37371053 37371053 C T NUP155 Silent p.A9A 0.17 TCGA-FD-A3SO-01 5 41382631 41382631 G A PLCXD3 Missense_Mutation p.H37Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 5 50091139 50091139 C T PARP8 Missense_Mutation p.S439L 0.29 tolerated_low_confidence(0.1) benign(0.005) TCGA-FD-A3SO-01 5 63510308 63510308 G A RNF180 Silent p.R385R 0.21 TCGA-FD-A3SO-01 5 7414870 7414870 C T ADCY2 Missense_Mutation p.S132F 0.11 tolerated(0.7) benign(0.008) TCGA-FD-A3SO-01 5 77409639 77409639 C G AP3B1 Missense_Mutation p.G729A 0.09 tolerated(0.27) possibly_damaging(0.794) TCGA-FD-A3SO-01 5 7878257 7878257 G A MTRR Missense_Mutation p.R228K 0.05 tolerated(0.93) benign(0.002) TCGA-FD-A3SO-01 5 7878391 7878391 C T MTRR Missense_Mutation p.P273S 0.13 deleterious(0.04) benign(0.197) TCGA-FD-A3SO-01 5 7892992 7892992 C T MTRR Missense_Mutation p.S535F 0.22 tolerated(0.05) benign(0.169) TCGA-FD-A3SO-01 5 78944941 78944941 C T PAPD4 Nonsense_Mutation p.Q319* 0.27 TCGA-FD-A3SO-01 5 79733262 79733262 C A ZFYVE16 Missense_Mutation p.S253Y 0.27 tolerated(0.14) probably_damaging(0.935) TCGA-FD-A3SO-01 5 79734015 79734015 C G ZFYVE16 Nonsense_Mutation p.S504* 0.32 TCGA-FD-A3SO-01 5 82789485 82789485 A G VCAN Missense_Mutation p.Y189C 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 5 83239311 83239311 C T EDIL3 Missense_Mutation p.R457K 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A3SO-01 5 95011140 95011140 C T SPATA9 Silent p.P118P 0.33 TCGA-FD-A3SO-01 5 98129101 98129101 G A RGMB Missense_Mutation p.E361K 0.17 deleterious(0) probably_damaging(0.985) TCGA-FD-A3SO-01 6 117243302 117243302 G C RFX6 Missense_Mutation p.Q475H 0.23 tolerated(0.34) benign(0.033) TCGA-FD-A3SO-01 6 117252568 117252568 C G RFX6 Missense_Mutation p.Q896E 0.28 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-FD-A3SO-01 6 128222209 128222209 G T THEMIS 5'UTR 0.14 TCGA-FD-A3SO-01 6 139206926 139206926 G A ECT2L Missense_Mutation p.A740T 0.30 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 6 142409491 142409491 G C NMBR Missense_Mutation p.S102W 0.37 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SO-01 6 146756034 146756034 C T GRM1 3'UTR 0.38 TCGA-FD-A3SO-01 6 150059906 150059906 C G NUP43 Missense_Mutation p.D171H 0.23 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SO-01 6 151671704 151671704 C T AKAP12 Silent p.D726D 0.27 TCGA-FD-A3SO-01 6 152477104 152477104 C T SYNE1 Silent p.T7973T 0.19 TCGA-FD-A3SO-01 6 159239222 159239222 G C EZR Intron 0.36 TCGA-FD-A3SO-01 6 169648730 169648730 C T THBS2 Missense_Mutation p.D131N 0.30 deleterious(0.02) possibly_damaging(0.58) TCGA-FD-A3SO-01 6 18160153 18160153 G C KDM1B Missense_Mutation p.K9N 0.21 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-FD-A3SO-01 6 26199400 26199400 G C HIST1H2AD Silent p.L24L 0.35 TCGA-FD-A3SO-01 6 27419547 27419547 C T ZNF184 Silent p.Q597Q 0.29 TCGA-FD-A3SO-01 6 28295307 28295307 G A ZSCAN31 Missense_Mutation p.P129S 0.26 tolerated(0.44) benign(0.007) TCGA-FD-A3SO-01 6 30458229 30458229 G A HLA-E Missense_Mutation p.D183N 0.32 deleterious_low_confidence(0.01) benign(0.278) TCGA-FD-A3SO-01 6 31599733 31599733 G A PRRC2A Missense_Mutation p.E1095K 0.17 unknown(0) TCGA-FD-A3SO-01 6 32029210 32029210 G A TNXB Missense_Mutation p.R2486W 0.31 possibly_damaging(0.555) TCGA-FD-A3SO-01 6 32035515 32035515 C G TNXB Missense_Mutation p.G2156A 0.24 benign(0.359) TCGA-FD-A3SO-01 6 32085730 32085730 C T ATF6B Missense_Mutation p.E444K 0.39 tolerated(0.38) benign(0.044) TCGA-FD-A3SO-01 6 33648329 33648329 C G ITPR3 Intron 0.25 TCGA-FD-A3SO-01 6 34985672 34985672 G A ANKS1A Missense_Mutation p.E616K 0.27 deleterious(0.01) benign(0.437) TCGA-FD-A3SO-01 6 36652198 36652199 - G CDKN1A Frame_Shift_Ins p.E108Gfs*21 0.21 TCGA-FD-A3SO-01 6 3723966 3723966 C G PXDC1 Missense_Mutation p.E195Q 0.27 deleterious_low_confidence(0.01) benign(0.081) TCGA-FD-A3SO-01 6 47544302 47544302 G C CD2AP Missense_Mutation p.E258Q 0.20 tolerated(0.08) benign(0.221) TCGA-FD-A3SO-01 6 47544789 47544789 G T CD2AP Nonsense_Mutation p.E285* 0.14 TCGA-FD-A3SO-01 6 47544795 47544795 G A CD2AP Missense_Mutation p.E287K 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-FD-A3SO-01 6 51497406 51497406 C T PKHD1 Silent p.L3874L 0.24 TCGA-FD-A3SO-01 6 57012191 57012191 T C ZNF451 Silent p.S436S 0.24 TCGA-FD-A3SO-01 6 64395407 64395407 C G PHF3 Missense_Mutation p.S595C 0.21 tolerated(0.1) benign(0.003) TCGA-FD-A3SO-01 6 69640534 69640534 G A BAI3 Missense_Mutation p.D281N 0.24 tolerated(0.23) benign(0.031) TCGA-FD-A3SO-01 6 71665851 71665851 C G B3GAT2 Missense_Mutation p.Q94H 0.34 deleterious(0) probably_damaging(0.984) TCGA-FD-A3SO-01 6 90333717 90333717 G C ANKRD6 Missense_Mutation p.E387Q 0.26 tolerated(0.14) benign(0.303) TCGA-FD-A3SO-01 7 102825985 102825985 C T DPY19L2P2 Splice_Site 0.41 TCGA-FD-A3SO-01 7 103018061 103018061 C T SLC26A5 Silent p.V657V 0.28 TCGA-FD-A3SO-01 7 128356937 128356937 C G FAM71F1 Missense_Mutation p.S107W 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 7 128806685 128806685 G A TSPAN33 Missense_Mutation p.D176N 0.21 tolerated(0.38) benign(0.395) TCGA-FD-A3SO-01 7 135661868 135661868 G A MTPN 5'UTR 0.22 TCGA-FD-A3SO-01 7 141724872 141724872 C T MGAM Missense_Mutation p.A302V 0.41 tolerated(0.9) benign(0.002) TCGA-FD-A3SO-01 7 151791294 151791294 C T GALNT11 5'UTR 0.28 TCGA-FD-A3SO-01 7 151860303 151860303 G A KMT2C Silent p.F3453F 0.25 TCGA-FD-A3SO-01 7 155604927 155604927 C G SHH 5'UTR 0.44 TCGA-FD-A3SO-01 7 22233637 22233637 C G RAPGEF5 Silent p.V184V 0.24 TCGA-FD-A3SO-01 7 23571485 23571485 C T TRA2A 5'UTR 0.29 TCGA-FD-A3SO-01 7 23810669 23810669 C T STK31 Nonsense_Mutation p.Q587* 0.23 TCGA-FD-A3SO-01 7 31018736 31018736 G A GHRHR Silent p.V383V 0.16 TCGA-FD-A3SO-01 7 41739721 41739721 C T INHBA Silent p.L84L 0.29 TCGA-FD-A3SO-01 7 71571273 71571273 C T CALN1 Missense_Mutation p.R84Q 0.37 tolerated(0.1) possibly_damaging(0.638) TCGA-FD-A3SO-01 7 74119540 74119540 C G GTF2I Missense_Mutation p.P211A 0.17 tolerated(0.08) benign(0.001) TCGA-FD-A3SO-01 7 83823834 83823834 C T SEMA3A Silent p.Q23Q 0.25 TCGA-FD-A3SO-01 7 87196174 87196174 G A ABCB1 Missense_Mutation p.H153Y 0.15 deleterious(0.01) possibly_damaging(0.831) TCGA-FD-A3SO-01 8 142490071 142490071 G T MROH5 3'UTR 0.27 TCGA-FD-A3SO-01 8 143959170 143959170 C G CYP11B1 Intron 0.23 TCGA-FD-A3SO-01 8 143959251 143959251 C G CYP11B1 Intron 0.22 TCGA-FD-A3SO-01 8 145689921 145689921 G A CYHR1 Silent p.S56S 0.24 TCGA-FD-A3SO-01 8 16026273 16026273 C T MSR1 Missense_Mutation p.M108I 0.31 tolerated(0.4) benign(0.005) TCGA-FD-A3SO-01 8 20054900 20054900 C T ATP6V1B2 5'UTR 0.44 TCGA-FD-A3SO-01 8 56695312 56695312 G A TGS1 Missense_Mutation p.R36Q 0.29 tolerated(0.06) benign(0.241) TCGA-FD-A3SO-01 8 59059267 59059267 G A FAM110B Missense_Mutation p.A160T 0.33 tolerated(0.46) benign(0.008) TCGA-FD-A3SO-01 8 69351819 69351819 G A C8orf34 Missense_Mutation p.R138H 0.30 tolerated(0.2) benign(0.031) TCGA-FD-A3SO-01 8 72987668 72987668 G A TRPA1 5'UTR 0.16 TCGA-FD-A3SO-01 8 74903693 74903693 T - LY96 Frame_Shift_Del p.S8Pfs*45 0.24 TCGA-FD-A3SO-01 9 100013094 100013094 G A CCDC180 5'UTR 0.25 TCGA-FD-A3SO-01 9 109690005 109690005 C T ZNF462 Missense_Mutation p.S1271L 0.30 probably_damaging(0.996) TCGA-FD-A3SO-01 9 109690177 109690177 C G ZNF462 Silent p.L1328L 0.23 TCGA-FD-A3SO-01 9 110062443 110062451 ATTGAATCT - RAD23B In_Frame_Del p.I30_S32del 0.21 TCGA-FD-A3SO-01 9 110250458 110250458 C T KLF4 Missense_Mutation p.D73N 0.18 deleterious(0.02) probably_damaging(0.981) TCGA-FD-A3SO-01 9 114134882 114134882 G C KIAA0368 Missense_Mutation p.S1630C 0.17 deleterious(0.02) possibly_damaging(0.834) TCGA-FD-A3SO-01 9 121929416 121929416 C T BRINP1 Silent p.L744L 0.17 TCGA-FD-A3SO-01 9 121930184 121930184 C T BRINP1 Silent p.L488L 0.20 TCGA-FD-A3SO-01 9 130506924 130506924 G A SH2D3C Silent p.G573G 0.24 TCGA-FD-A3SO-01 9 135153600 135153600 G A SETX Silent p.F2233F 0.26 TCGA-FD-A3SO-01 9 137809709 137809709 C G FCN1 Silent p.L3L 0.27 TCGA-FD-A3SO-01 9 139358973 139358973 G A SEC16A Missense_Mutation p.H1449Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SO-01 9 139726762 139726762 G A RABL6 Silent p.K216K 0.30 TCGA-FD-A3SO-01 9 15474012 15474012 C T PSIP1 Missense_Mutation p.E285K 0.15 tolerated(0.41) benign(0.152) TCGA-FD-A3SO-01 9 27561630 27561630 G C C9orf72 Silent p.L206L 0.20 TCGA-FD-A3SO-01 9 33256861 33256861 C T BAG1 Missense_Mutation p.D275N 0.26 tolerated(0.12) benign(0.067) TCGA-FD-A3SO-01 9 7174705 7174705 G A KDM4C Silent p.Q1049Q 0.27 TCGA-FD-A3SO-01 9 8485769 8485769 C A PTPRD Silent p.V1016V 0.36 TCGA-FD-A3SO-01 9 8633395 8633395 C G PTPRD Missense_Mutation p.D92H 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A3SO-01 9 86917179 86917179 G A SLC28A3 Nonsense_Mutation p.R154* 0.29 TCGA-FD-A3SO-01 9 94493358 94493358 C T ROR2 Silent p.P339P 0.39 TCGA-FD-A3SO-01 9 95784614 95784614 G A FGD3 Silent p.T500T 0.28 TCGA-FD-A3SO-01 9 990293 990293 C T DMRT3 Missense_Mutation p.S236L 0.26 deleterious(0.02) benign(0.024) TCGA-FD-A3SO-01 X 134425016 134425016 C G ZNF75D Missense_Mutation p.E248Q 0.09 deleterious(0) possibly_damaging(0.576) TCGA-FD-A3SO-01 X 135126738 135126738 G A SLC9A6 Missense_Mutation p.G654E 0.55 deleterious_low_confidence(0.03) benign(0.009) TCGA-FD-A3SO-01 X 135428058 135428058 G C GPR112 Missense_Mutation p.L731F 0.63 tolerated(0.07) benign(0.014) TCGA-FD-A3SO-01 X 136113174 136113174 C T GPR101 Silent p.R220R 0.59 TCGA-FD-A3SO-01 X 140996131 140996131 G C MAGEC1 Missense_Mutation p.D981H 0.54 deleterious(0.01) unknown(0) TCGA-FD-A3SO-01 X 1501369 1501369 C T IL3RA 3'UTR 0.24 TCGA-FD-A3SO-01 X 150349067 150349067 G A GPR50 Missense_Mutation p.A338T 0.08 deleterious(0.01) possibly_damaging(0.537) TCGA-FD-A3SO-01 X 15474083 15474083 G C PIR Nonsense_Mutation p.S123* 0.13 TCGA-FD-A3SO-01 X 17750460 17750460 G C NHS Missense_Mutation p.S1590T 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-FD-A3SO-01 X 18259353 18259353 C T SCML2 3'UTR 0.56 TCGA-FD-A3SO-01 X 3239561 3239561 C T MXRA5 Missense_Mutation p.G1389R 0.65 tolerated(0.18) benign(0.001) TCGA-FD-A3SO-01 X 3239741 3239741 C T MXRA5 Missense_Mutation p.D1329N 0.53 tolerated(0.33) benign(0) TCGA-FD-A3SO-01 X 3239744 3239744 C T MXRA5 Missense_Mutation p.D1328N 0.53 tolerated(0.99) benign(0.003) TCGA-FD-A3SO-01 X 49065842 49065842 C T CACNA1F Silent p.R1622R 0.38 TCGA-FD-A3SO-01 X 55784744 55784744 G A RRAGB Missense_Mutation p.D365N 0.69 tolerated(0.11) benign(0.008) TCGA-FD-A3SO-01 X 73068104 73068104 G A XIST RNA 0.43 TCGA-FD-A3SO-01 X 7811928 7811928 G C VCX Silent p.L164L 0.29 TCGA-FD-A3SO-01 Y 22918664 22918664 G A RPS4Y2 Missense_Mutation p.A2T 0.33 tolerated(0.07) benign(0.259) TCGA-FD-A3SP-01 10 117228809 117228809 C T ATRNL1 Silent p.V1208V 0.11 TCGA-FD-A3SP-01 10 134218933 134218933 C A PWWP2B Nonsense_Mutation p.S310* 0.25 TCGA-FD-A3SP-01 10 1405298 1405298 G A ADARB2 Silent p.A334A 0.25 TCGA-FD-A3SP-01 10 29821479 29821479 T A SVIL Missense_Mutation p.N606I 0.24 deleterious(0.01) benign(0.211) TCGA-FD-A3SP-01 10 52389979 52389979 C T RP11-50E11.3 RNA 0.22 TCGA-FD-A3SP-01 11 117303215 117303215 C T DSCAML1 Missense_Mutation p.D1738N 0.09 deleterious(0) probably_damaging(0.987) TCGA-FD-A3SP-01 11 119216184 119216184 G T MFRP Missense_Mutation p.S196Y 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-FD-A3SP-01 11 119216325 119216325 G C MFRP Missense_Mutation p.S149C 0.19 tolerated(0.19) possibly_damaging(0.708) TCGA-FD-A3SP-01 11 119216543 119216543 G C MFRP Missense_Mutation p.Q123E 0.14 tolerated(1) benign(0.001) TCGA-FD-A3SP-01 11 18460094 18460094 G C LDHC Silent p.V204V 0.13 TCGA-FD-A3SP-01 11 26587103 26587103 T C MUC15 Silent p.K128K 0.18 TCGA-FD-A3SP-01 11 46786765 46786765 C T CKAP5 Silent p.K1151K 0.24 TCGA-FD-A3SP-01 11 65349830 65349830 G T EHBP1L1 Nonsense_Mutation p.E563* 0.09 TCGA-FD-A3SP-01 11 76814355 76814355 C T OMP Missense_Mutation p.S157F 0.13 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-FD-A3SP-01 11 89133385 89133385 G A NOX4 Nonsense_Mutation p.Q337* 0.08 TCGA-FD-A3SP-01 12 101801531 101801531 G T ARL1 5'UTR 0.12 TCGA-FD-A3SP-01 12 16052918 16052918 G A STRAP Missense_Mutation p.D286N 0.18 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SP-01 12 42853914 42853914 G T PRICKLE1 Nonsense_Mutation p.Y731* 0.16 TCGA-FD-A3SP-01 12 49444391 49444391 C A KMT2D Nonsense_Mutation p.E994* 0.12 TCGA-FD-A3SP-01 12 49445170 49445170 C T KMT2D Missense_Mutation p.E766K 0.11 unknown(0) TCGA-FD-A3SP-01 12 56086673 56086673 G A ITGA7 Silent p.S937S 0.13 TCGA-FD-A3SP-01 12 58139956 58139956 C T TSPAN31 Intron 0.09 TCGA-FD-A3SP-01 12 6078422 6078422 G A VWF Nonsense_Mutation p.Q2562* 0.23 TCGA-FD-A3SP-01 12 6078430 6078430 G A VWF Missense_Mutation p.S2559L 0.26 tolerated(1) benign(0.001) TCGA-FD-A3SP-01 12 73046848 73046848 G A TRHDE Missense_Mutation p.D921N 0.09 tolerated(0.23) possibly_damaging(0.795) TCGA-FD-A3SP-01 12 93100779 93100779 C T C12orf74 Silent p.P124P 0.07 TCGA-FD-A3SP-01 12 93244925 93244925 C T EEA1 Missense_Mutation p.E254K 0.14 tolerated(0.09) benign(0.011) TCGA-FD-A3SP-01 13 103326727 103326727 G A TPP2 Missense_Mutation p.G1143R 0.20 deleterious(0.01) possibly_damaging(0.9) TCGA-FD-A3SP-01 13 108860901 108860901 C T LIG4 Missense_Mutation p.E906K 0.31 deleterious(0) possibly_damaging(0.837) TCGA-FD-A3SP-01 13 28794473 28794473 C T PAN3 Missense_Mutation p.H320Y 0.19 deleterious(0.04) benign(0.012) TCGA-FD-A3SP-01 13 38213252 38213252 G T TRPC4 Missense_Mutation p.N717K 0.09 tolerated(0.09) possibly_damaging(0.495) TCGA-FD-A3SP-01 13 86368575 86368575 T C SLITRK6 Missense_Mutation p.Y690C 0.16 tolerated(1) benign(0.07) TCGA-FD-A3SP-01 14 24546221 24546221 G A CPNE6 Silent p.T433T 0.26 TCGA-FD-A3SP-01 14 54417548 54417548 G A BMP4 Silent p.N143N 0.27 TCGA-FD-A3SP-01 15 22929892 22929892 A G CYFIP1 Missense_Mutation p.K189R 0.38 tolerated(1) benign(0.004) TCGA-FD-A3SP-01 15 43817292 43817292 G C MAP1A Missense_Mutation p.E1207D 0.13 probably_damaging(0.995) TCGA-FD-A3SP-01 15 49329879 49329879 C T SECISBP2L Missense_Mutation p.D38N 0.13 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-FD-A3SP-01 15 50866552 50866552 T A TRPM7 Missense_Mutation p.T1743S 0.06 tolerated(0.67) benign(0.025) TCGA-FD-A3SP-01 15 71125360 71125360 C G LARP6 Missense_Mutation p.R169S 0.12 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SP-01 15 78640302 78640302 A G CRABP1 Missense_Mutation p.I133V 0.14 tolerated(1) benign(0.009) TCGA-FD-A3SP-01 16 10631801 10631801 G A EMP2 Silent p.I100I 0.22 TCGA-FD-A3SP-01 16 20448621 20448621 G T ACSM5 Missense_Mutation p.A490S 0.12 deleterious(0.01) probably_damaging(0.966) TCGA-FD-A3SP-01 16 20952843 20952844 - G DNAH3 Frame_Shift_Ins p.Q3845Pfs*12 0.19 TCGA-FD-A3SP-01 16 2821480 2821480 C A TCEB2 Missense_Mutation p.G160V 0.30 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-FD-A3SP-01 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.19 unknown(0) TCGA-FD-A3SP-01 16 4016470 4016470 G A ADCY9 Missense_Mutation p.A1123V 0.09 tolerated(0.24) benign(0.001) TCGA-FD-A3SP-01 16 51174110 51174110 G C SALL1 Missense_Mutation p.P675A 0.12 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SP-01 16 57416922 57416922 C T CX3CL1 Missense_Mutation p.S391L 0.12 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SP-01 16 67679643 67679643 G C RLTPR Missense_Mutation p.R50T 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SP-01 16 70516007 70516007 C G COG4 Missense_Mutation p.M664I 0.14 tolerated(0.07) possibly_damaging(0.509) TCGA-FD-A3SP-01 17 16089958 16089958 C T NCOR1 Missense_Mutation p.S51N 0.13 benign(0.001) TCGA-FD-A3SP-01 17 19685248 19685248 C G ULK2 Missense_Mutation p.E865Q 0.10 tolerated(0.64) probably_damaging(0.925) TCGA-FD-A3SP-01 17 27308687 27308687 C T SEZ6 Silent p.P142P 0.12 TCGA-FD-A3SP-01 17 30986217 30986217 C T MYO1D Missense_Mutation p.R754Q 0.23 tolerated(0.22) benign(0.002) TCGA-FD-A3SP-01 17 37790282 37790282 G C PPP1R1B Missense_Mutation p.E130Q 0.12 deleterious(0.02) possibly_damaging(0.689) TCGA-FD-A3SP-01 17 39740032 39740032 C T KRT14 Missense_Mutation p.E303K 0.09 tolerated(0.06) possibly_damaging(0.721) TCGA-FD-A3SP-01 17 40831910 40831910 C A CCR10 Silent p.V250V 0.25 TCGA-FD-A3SP-01 17 57058429 57058429 T C PPM1E 3'UTR 0.24 TCGA-FD-A3SP-01 17 7576886 7576886 C T TP53 Silent p.K320K 0.38 TCGA-FD-A3SP-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.34 deleterious(0) probably_damaging(0.947) TCGA-FD-A3SP-01 17 7751845 7751845 C G KDM6B Missense_Mutation p.P747A 0.11 unknown(0) TCGA-FD-A3SP-01 17 7836462 7836462 C T CNTROB Missense_Mutation p.S22L 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FD-A3SP-01 19 11032439 11032439 C T CARM1 3'UTR 0.08 TCGA-FD-A3SP-01 19 3642935 3642935 C T PIP5K1C Missense_Mutation p.R551Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.793) TCGA-FD-A3SP-01 19 39805227 39805227 G A LRFN1 Silent p.G250G 0.23 TCGA-FD-A3SP-01 19 40902543 40902543 C T PRX Silent p.V572V 0.05 TCGA-FD-A3SP-01 19 41745178 41745178 G C AXL Missense_Mutation p.G415A 0.25 deleterious(0.01) possibly_damaging(0.834) TCGA-FD-A3SP-01 19 43763021 43763021 G A PSG9 Silent p.L326L 0.07 TCGA-FD-A3SP-01 19 47236403 47236403 G A STRN4 Silent p.N210N 0.15 TCGA-FD-A3SP-01 19 49442919 49442919 C G DHDH Missense_Mutation p.P194A 0.07 deleterious(0) probably_damaging(0.992) TCGA-FD-A3SP-01 19 52497324 52497324 C T ZNF615 Silent p.Q346Q 0.23 TCGA-FD-A3SP-01 19 55758399 55758399 G A PPP6R1 Missense_Mutation p.P25S 0.06 tolerated(0.65) benign(0.007) TCGA-FD-A3SP-01 19 8429403 8429403 G C ANGPTL4 Silent p.L66L 0.38 TCGA-FD-A3SP-01 19 9087678 9087678 C T MUC16 Silent p.P1379P 0.06 TCGA-FD-A3SP-01 1 109793320 109793320 G C CELSR2 Missense_Mutation p.D207H 0.08 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SP-01 1 12460316 12460316 G A VPS13D Missense_Mutation p.E3905K 0.31 benign(0.089) TCGA-FD-A3SP-01 1 145771648 145771648 C T GPR89A Missense_Mutation p.G331E 0.06 deleterious(0.01) probably_damaging(0.972) TCGA-FD-A3SP-01 1 151315450 151315450 G T RFX5 Missense_Mutation p.L355I 0.18 tolerated_low_confidence(0.15) probably_damaging(0.996) TCGA-FD-A3SP-01 1 152282251 152282251 G C FLG Missense_Mutation p.S1704C 0.10 possibly_damaging(0.902) TCGA-FD-A3SP-01 1 153955690 153955690 C G RAB13 Intron 0.09 TCGA-FD-A3SP-01 1 156203509 156203509 G A PMF1 Missense_Mutation p.E120K 0.05 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-FD-A3SP-01 1 156845927 156845927 C T NTRK1 Silent p.G519G 0.07 TCGA-FD-A3SP-01 1 157514227 157514227 C T FCRL5 Silent p.P223P 0.15 TCGA-FD-A3SP-01 1 15831211 15831211 C T CASP9 Missense_Mutation p.G255R 0.20 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SP-01 1 158449927 158449927 C G OR10R2 Nonsense_Mutation p.S87* 0.13 TCGA-FD-A3SP-01 1 203696782 203696782 G A ATP2B4 Intron 0.40 TCGA-FD-A3SP-01 1 211433478 211433478 C A RCOR3 Nonsense_Mutation p.Y65* 0.47 TCGA-FD-A3SP-01 1 248224518 248224518 G A OR2L3 Missense_Mutation p.D179N 0.18 tolerated(0.11) benign(0.12) TCGA-FD-A3SP-01 1 248616650 248616650 C A OR2T2 Silent p.A184A 0.17 TCGA-FD-A3SP-01 1 248756267 248756267 G A OR2T10 Missense_Mutation p.P268L 0.16 deleterious(0.01) benign(0.33) TCGA-FD-A3SP-01 1 27101322 27101326 CAGAT - ARID1A Frame_Shift_Del p.D1536Efs*34 0.17 TCGA-FD-A3SP-01 1 44086513 44086513 G A PTPRF Missense_Mutation p.G1790E 0.24 deleterious(0) probably_damaging(1) TCGA-FD-A3SP-01 1 47548040 47548040 G A CYP4Z1 Nonsense_Mutation p.W133* 0.13 TCGA-FD-A3SP-01 1 70504189 70504189 C T LRRC7 Silent p.T856T 0.08 TCGA-FD-A3SP-01 1 78098224 78098224 T - ZZZ3 Frame_Shift_Del p.V273Cfs*10 0.13 TCGA-FD-A3SP-01 1 89523877 89523877 G C GBP1 Silent p.L224L 0.05 TCGA-FD-A3SP-01 20 3028475 3028475 G C MRPS26 Missense_Mutation p.R193T 0.07 deleterious(0) possibly_damaging(0.624) TCGA-FD-A3SP-01 20 31021672 31021672 C G ASXL1 Silent p.T557T 0.15 TCGA-FD-A3SP-01 20 47639592 47639592 G T ARFGEF2 Missense_Mutation p.Q1543H 0.07 tolerated(0.07) benign(0.008) TCGA-FD-A3SP-01 22 20073753 20073753 G A DGCR8 Silent p.P89P 0.13 TCGA-FD-A3SP-01 22 29917075 29917075 G C THOC5 Missense_Mutation p.P397A 0.17 tolerated(0.07) benign(0) TCGA-FD-A3SP-01 22 32242867 32242867 G A DEPDC5 Silent p.T1014T 0.23 TCGA-FD-A3SP-01 22 42415340 42415340 G A WBP2NL Missense_Mutation p.E30K 0.08 deleterious(0.01) possibly_damaging(0.747) TCGA-FD-A3SP-01 2 107446656 107446656 A C ST6GAL2 Missense_Mutation p.I395S 0.18 possibly_damaging(0.579) TCGA-FD-A3SP-01 2 109400167 109400167 A G RANBP2 Missense_Mutation p.N3162S 0.10 deleterious(0) probably_damaging(0.916) TCGA-FD-A3SP-01 2 113940254 113940254 A G PSD4 Missense_Mutation p.H74R 0.11 tolerated_low_confidence(0.11) benign(0.227) TCGA-FD-A3SP-01 2 168101824 168101824 G A XIRP2 Missense_Mutation p.D1308N 0.16 benign(0.386) TCGA-FD-A3SP-01 2 179542881 179542881 G A TTN Missense_Mutation p.P11322L 0.08 TCGA-FD-A3SP-01 2 204144831 204144831 C A CYP20A1 Missense_Mutation p.A282E 0.27 deleterious(0) probably_damaging(0.992) TCGA-FD-A3SP-01 2 219292748 219292748 C T VIL1 Silent p.V136V 0.12 TCGA-FD-A3SP-01 2 223096999 223096999 G A PAX3 Missense_Mutation p.S197L 0.10 deleterious(0.05) benign(0.002) TCGA-FD-A3SP-01 2 226447640 226447640 C T NYAP2 Missense_Mutation p.R503W 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A3SP-01 2 238296565 238296565 G A COL6A3 Silent p.L324L 0.12 TCGA-FD-A3SP-01 2 238626428 238626428 A G LRRFIP1 Intron 0.19 TCGA-FD-A3SP-01 2 44023913 44023913 T G DYNC2LI1 Missense_Mutation p.H211Q 0.20 deleterious(0) possibly_damaging(0.844) TCGA-FD-A3SP-01 2 73446021 73446021 G A SMYD5 Silent p.R43R 0.18 TCGA-FD-A3SP-01 2 97509750 97509750 C - ANKRD23 5'UTR 0.21 TCGA-FD-A3SP-01 3 109046723 109046723 G A DPPA4 3'UTR 0.05 TCGA-FD-A3SP-01 3 131190094 131190094 T C MRPL3 Missense_Mutation p.K220R 0.09 deleterious(0.01) possibly_damaging(0.499) TCGA-FD-A3SP-01 3 186006620 186006620 C T DGKG Silent p.A141A 0.21 TCGA-FD-A3SP-01 3 25216052 25216053 CC - AC133680.1 3'Flank 0.24 TCGA-FD-A3SP-01 3 25542729 25542729 G C RARB Missense_Mutation p.K121N 0.09 deleterious(0.03) possibly_damaging(0.502) TCGA-FD-A3SP-01 3 25835785 25835785 G A OXSM Missense_Mutation p.E394K 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3SP-01 3 45800507 45800507 C T SLC6A20 Missense_Mutation p.R581H 0.23 tolerated(0.05) benign(0.005) TCGA-FD-A3SP-01 3 47908773 47908773 G A MAP4 Missense_Mutation p.S1010F 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A3SP-01 3 48694483 48694483 G A CELSR3 Silent p.S1349S 0.11 TCGA-FD-A3SP-01 3 49136834 49136834 G A QARS Silent p.L519L 0.12 TCGA-FD-A3SP-01 3 49394857 49394857 G T GPX1 Silent p.I192I 0.13 TCGA-FD-A3SP-01 3 57658153 57658153 G A DENND6A Nonsense_Mutation p.Q84* 0.12 TCGA-FD-A3SP-01 4 143044482 143044482 C A INPP4B Silent p.G660G 0.08 TCGA-FD-A3SP-01 4 1944193 1944193 C G WHSC1 Intron 0.11 TCGA-FD-A3SP-01 5 112256991 112256991 G A REEP5 Intron 0.31 TCGA-FD-A3SP-01 5 128368806 128368806 T A SLC27A6 Missense_Mutation p.M564K 0.18 deleterious(0) probably_damaging(0.942) TCGA-FD-A3SP-01 5 140222221 140222221 G A PCDHA8 Missense_Mutation p.A439T 0.13 deleterious_low_confidence(0.05) benign(0.053) TCGA-FD-A3SP-01 5 140222946 140222946 G A PCDHA8 Silent p.S680S 0.10 TCGA-FD-A3SP-01 5 176665484 176665484 G C NSD1 Missense_Mutation p.E1390Q 0.24 deleterious(0.04) possibly_damaging(0.809) TCGA-FD-A3SP-01 5 39377092 39377092 A G DAB2 Silent p.F599F 0.07 TCGA-FD-A3SP-01 5 52856471 52856471 C A NDUFS4 5'UTR 0.28 TCGA-FD-A3SP-01 6 109867162 109867162 C G AK9 Missense_Mutation p.D1045H 0.08 tolerated(0.08) possibly_damaging(0.907) TCGA-FD-A3SP-01 6 127517282 127517282 A G RSPO3 3'UTR 0.21 TCGA-FD-A3SP-01 6 128302401 128302401 C T PTPRK Missense_Mutation p.E1197K 0.19 deleterious(0) probably_damaging(0.984) TCGA-FD-A3SP-01 6 129475825 129475825 A G LAMA2 Silent p.K401K 0.09 TCGA-FD-A3SP-01 6 132030193 132030193 C G CTAGE9 Missense_Mutation p.R655S 0.15 tolerated(0.08) benign(0.007) TCGA-FD-A3SP-01 6 135287557 135287557 T C HBS1L Missense_Mutation p.I651M 0.25 tolerated(0.06) possibly_damaging(0.721) TCGA-FD-A3SP-01 6 13977507 13977507 G C RNF182 Missense_Mutation p.D53H 0.06 tolerated(0.1) benign(0.039) TCGA-FD-A3SP-01 6 28967310 28967310 G A ZNF311 Silent p.L88L 0.07 TCGA-FD-A3SP-01 6 41874702 41874702 G C MED20 3'UTR 0.25 TCGA-FD-A3SP-01 6 53160459 53160459 C G ELOVL5 Missense_Mutation p.K13N 0.20 tolerated(0.1) benign(0.096) TCGA-FD-A3SP-01 6 90053459 90053459 C T UBE2J1 Missense_Mutation p.M16I 0.10 deleterious(0) probably_damaging(0.968) TCGA-FD-A3SP-01 7 107253835 107253835 G A BCAP29 Silent p.S216S 0.21 TCGA-FD-A3SP-01 7 28996417 28996417 C T AC005013.5 5'Flank 0.23 TCGA-FD-A3SP-01 7 79082591 79082591 G A MAGI2 Missense_Mutation p.H16Y 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-FD-A3SP-01 7 91625086 91625086 T C AKAP9 Missense_Mutation p.L301S 0.23 probably_damaging(0.992) TCGA-FD-A3SP-01 7 95125268 95125268 G A ASB4 Missense_Mutation p.R129H 0.18 tolerated(1) benign(0) TCGA-FD-A3SP-01 7 97823561 97823561 G A LMTK2 Missense_Mutation p.E1262K 0.09 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SP-01 8 125499906 125499906 G T RNF139 3'UTR 0.19 TCGA-FD-A3SP-01 8 71126156 71126156 G A NCOA2 Missense_Mutation p.R81C 0.32 deleterious(0.02) probably_damaging(1) TCGA-FD-A3SP-01 9 106900437 106900437 A G SMC2 Silent p.T1136T 0.36 TCGA-FD-A3SP-01 9 139273423 139273423 G A SNAPC4 Silent p.L952L 0.45 TCGA-FD-A3SP-01 9 139752992 139752992 G A MAMDC4 Missense_Mutation p.E939K 0.20 tolerated(0.23) benign(0.021) TCGA-FD-A3SP-01 9 139754441 139754441 G C MAMDC4 Missense_Mutation p.Q1099H 0.26 tolerated(0.11) benign(0.346) TCGA-FD-A3SP-01 9 19376294 19376294 T C RPS6 Silent p.K249K 0.09 TCGA-FD-A3SP-01 9 33676347 33676347 G C PTENP1 RNA 0.32 TCGA-FD-A3SP-01 9 71098912 71098912 C T PGM5 Missense_Mutation p.T476M 0.19 deleterious(0.03) benign(0.018) TCGA-FD-A3SP-01 9 95841805 95841805 G A SUSD3 Missense_Mutation p.A160T 0.29 deleterious(0) probably_damaging(0.957) TCGA-FD-A3SP-01 X 106846360 106846360 G T FRMPD3 Silent p.V1730V 0.41 TCGA-FD-A3SP-01 X 129506962 129506962 T G SLC25A14 3'UTR 0.06 TCGA-FD-A3SP-01 X 77275742 77275742 G C ATP7A Silent p.G876G 0.19 TCGA-FD-A3SP-01 X 96213049 96213049 C T DIAPH2 Missense_Mutation p.P613S 0.38 tolerated(0.33) unknown(0) TCGA-FD-A3SQ-01 10 125526589 125526589 T C CPXM2 Missense_Mutation p.N460S 0.18 deleterious(0.01) possibly_damaging(0.581) TCGA-FD-A3SQ-01 10 131640400 131640400 G A EBF3 Missense_Mutation p.T442M 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-FD-A3SQ-01 10 135202547 135202547 C T PAOX Silent p.L403L 0.06 TCGA-FD-A3SQ-01 10 24873643 24873643 G A ARHGAP21 Missense_Mutation p.R1859C 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-FD-A3SQ-01 10 24873919 24873919 C G ARHGAP21 Missense_Mutation p.D1767H 0.18 deleterious(0) probably_damaging(0.988) TCGA-FD-A3SQ-01 10 31137576 31137576 C T ZNF438 Silent p.L586L 0.25 TCGA-FD-A3SQ-01 10 91007301 91007301 C T LIPA Missense_Mutation p.M35I 0.16 deleterious(0.01) possibly_damaging(0.534) TCGA-FD-A3SQ-01 11 60781397 60781397 C T CD6 Missense_Mutation p.P433L 0.17 deleterious(0) probably_damaging(0.911) TCGA-FD-A3SQ-01 11 6290930 6290930 C T CCKBR Silent p.Y61Y 0.19 TCGA-FD-A3SQ-01 11 76814045 76814045 C T OMP Missense_Mutation p.R54C 0.16 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-FD-A3SQ-01 12 100200436 100200436 C T ANKS1B Missense_Mutation p.G139R 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3SQ-01 12 122958344 122958344 C G ZCCHC8 Missense_Mutation p.Q608H 0.26 tolerated(0.08) benign(0.444) TCGA-FD-A3SQ-01 12 14767865 14767865 C T GUCY2C Missense_Mutation p.E995K 0.15 deleterious(0.04) possibly_damaging(0.9) TCGA-FD-A3SQ-01 13 102527614 102527614 A G FGF14 Missense_Mutation p.Y81H 0.22 deleterious(0.04) benign(0.183) TCGA-FD-A3SQ-01 14 36789701 36789701 C T MBIP Missense_Mutation p.E32K 0.23 tolerated(0.48) benign(0.438) TCGA-FD-A3SQ-01 14 36946212 36946212 C T SFTA3 Silent p.T75T 0.07 TCGA-FD-A3SQ-01 14 59798179 59798179 C T DAAM1 Nonsense_Mutation p.Q605* 0.22 TCGA-FD-A3SQ-01 15 25320984 25320984 C T SNORD116-9 3'Flank 0.18 TCGA-FD-A3SQ-01 15 25321010 25321010 G T SNORD116-9 3'Flank 0.23 TCGA-FD-A3SQ-01 15 66820228 66820229 - A ZWILCH Frame_Shift_Ins p.D319Rfs*3 0.34 TCGA-FD-A3SQ-01 16 53348844 53348844 A G CHD9 Missense_Mutation p.N2475S 0.26 unknown(0) TCGA-FD-A3SQ-01 17 27447754 27447754 G A MYO18A Silent p.Y536Y 0.14 TCGA-FD-A3SQ-01 17 48755296 48755296 C T ABCC3 Silent p.I1190I 0.12 TCGA-FD-A3SQ-01 17 48755499 48755499 C G ABCC3 Silent p.L1208L 0.16 TCGA-FD-A3SQ-01 17 6606437 6606437 C T SLC13A5 Missense_Mutation p.G190S 0.08 tolerated(0.49) benign(0.232) TCGA-FD-A3SQ-01 17 7253548 7253548 C G ACAP1 Missense_Mutation p.I688M 0.25 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SQ-01 19 36508845 36508845 C T CLIP3 Missense_Mutation p.R411H 0.22 tolerated(0.05) benign(0.379) TCGA-FD-A3SQ-01 19 42486133 42486133 C A ATP1A3 Missense_Mutation p.Q386H 0.05 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SQ-01 19 46094765 46094765 G A GPR4 Silent p.A120A 0.17 TCGA-FD-A3SQ-01 19 50666025 50666025 G A IZUMO2 Missense_Mutation p.T93M 0.18 deleterious(0.03) possibly_damaging(0.897) TCGA-FD-A3SQ-01 19 51165497 51165497 C T SHANK1 Missense_Mutation p.G2071R 0.09 unknown(0) TCGA-FD-A3SQ-01 19 55816954 55816954 G C BRSK1 Silent p.S630S 0.25 TCGA-FD-A3SQ-01 19 7117211 7117211 A G INSR Silent p.C1335C 0.33 TCGA-FD-A3SQ-01 19 8188893 8188893 C G FBN3 Splice_Site p.X911_splice 0.36 TCGA-FD-A3SQ-01 1 110709723 110709723 G A SLC6A17 Missense_Mutation p.E58K 0.25 tolerated(0.1) benign(0.146) TCGA-FD-A3SQ-01 1 115118216 115118216 G T BCAS2 Nonsense_Mutation p.Y138* 0.28 TCGA-FD-A3SQ-01 1 120254678 120254678 C T PHGDH Silent p.I11I 0.19 TCGA-FD-A3SQ-01 1 155774915 155774915 G A GON4L Silent p.L490L 0.33 TCGA-FD-A3SQ-01 1 201983027 201983028 - A ELF3 Frame_Shift_Ins p.M293Nfs*8 0.24 TCGA-FD-A3SQ-01 1 203276391 203276391 C T BTG2 Missense_Mutation p.T101I 0.12 deleterious(0) probably_damaging(0.992) TCGA-FD-A3SQ-01 1 241094020 241094020 A T RGS7 Missense_Mutation p.Y128N 0.57 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SQ-01 1 247875460 247875460 A G OR6F1 Missense_Mutation p.F200L 0.11 tolerated(0.13) benign(0.174) TCGA-FD-A3SQ-01 1 248569879 248569879 T A OR2T1 Missense_Mutation p.I195K 0.10 deleterious(0) possibly_damaging(0.906) TCGA-FD-A3SQ-01 1 27736473 27736473 G A WASF2 Missense_Mutation p.S351L 0.19 tolerated(0.95) unknown(0) TCGA-FD-A3SQ-01 1 43200892 43200892 A G CLDN19 Intron 0.33 TCGA-FD-A3SQ-01 1 64117350 64117350 G A PGM1 Missense_Mutation p.E449K 0.33 deleterious(0) benign(0.363) TCGA-FD-A3SQ-01 1 6696194 6696194 A G DNAJC11 Missense_Mutation p.L546P 0.17 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SQ-01 20 33572681 33572681 G C MYH7B Missense_Mutation p.E267Q 0.23 benign(0.145) TCGA-FD-A3SQ-01 20 34144161 34144161 G C ERGIC3 Intron 0.22 TCGA-FD-A3SQ-01 21 10973745 10973745 G A TPTE 5'UTR 0.12 TCGA-FD-A3SQ-01 21 36259448 36259448 C T RUNX1 Intron 0.29 TCGA-FD-A3SQ-01 21 47531966 47531966 G C COL6A2 Silent p.T63T 0.31 TCGA-FD-A3SQ-01 22 18210180 18210180 C T BCL2L13 Silent p.A446A 0.22 TCGA-FD-A3SQ-01 22 43930620 43930620 G C EFCAB6 Missense_Mutation p.A1394G 0.07 tolerated(0.07) possibly_damaging(0.543) TCGA-FD-A3SQ-01 22 46859620 46859620 G T CELSR1 Nonsense_Mutation p.C1389* 0.33 TCGA-FD-A3SQ-01 22 46859881 46859881 G A CELSR1 Silent p.F1302F 0.21 TCGA-FD-A3SQ-01 2 108488251 108488251 G A RGPD4 Missense_Mutation p.S1264N 0.31 tolerated(0.17) possibly_damaging(0.593) TCGA-FD-A3SQ-01 2 11367412 11367412 G A ROCK2 Missense_Mutation p.S279F 0.32 deleterious(0) probably_damaging(1) TCGA-FD-A3SQ-01 2 121107201 121107201 C T INHBB Silent p.T325T 0.25 TCGA-FD-A3SQ-01 2 168107280 168107280 A G XIRP2 Missense_Mutation p.I3126M 0.17 probably_damaging(1) TCGA-FD-A3SQ-01 2 170011072 170011072 G A LRP2 Nonsense_Mutation p.R4065* 0.33 TCGA-FD-A3SQ-01 2 179532370 179532370 G A TTN Missense_Mutation p.A11875V 0.16 TCGA-FD-A3SQ-01 2 179640412 179640412 G A TTN Missense_Mutation p.T2060M 0.13 TCGA-FD-A3SQ-01 2 234545237 234545237 C T UGT1A10 Silent p.A23A 0.22 TCGA-FD-A3SQ-01 2 70903954 70903954 C T ADD2 Missense_Mutation p.V523I 0.17 tolerated(0.73) probably_damaging(0.986) TCGA-FD-A3SQ-01 3 122419588 122419588 C G PARP14 Missense_Mutation p.D729E 0.12 tolerated(0.69) benign(0.114) TCGA-FD-A3SQ-01 3 127325534 127325534 C G MCM2 Silent p.V325V 0.24 TCGA-FD-A3SQ-01 3 140140011 140140011 C T CLSTN2 Nonsense_Mutation p.Q228* 0.26 TCGA-FD-A3SQ-01 3 140282913 140282913 G A CLSTN2 Missense_Mutation p.E865K 0.18 tolerated(0.18) benign(0.011) TCGA-FD-A3SQ-01 3 141884413 141884413 C G GK5 3'UTR 0.26 TCGA-FD-A3SQ-01 3 184062488 184062488 C T FAM131A Silent p.G277G 0.08 TCGA-FD-A3SQ-01 3 193130158 193130158 G A ATP13A4 Missense_Mutation p.A1006V 0.23 tolerated(0.18) benign(0.023) TCGA-FD-A3SQ-01 3 46542025 46542025 C G RTP3 Nonsense_Mutation p.S112* 0.30 TCGA-FD-A3SQ-01 3 49450045 49450047 TAC - TCTA In_Frame_Del p.N62_T63delinsK 0.32 TCGA-FD-A3SQ-01 3 51266209 51266209 A T DOCK3 Nonsense_Mutation p.K589* 0.23 TCGA-FD-A3SQ-01 4 126238269 126238269 C T FAT4 Nonsense_Mutation p.Q235* 0.24 TCGA-FD-A3SQ-01 4 126239451 126239451 C A FAT4 Silent p.R629R 0.26 TCGA-FD-A3SQ-01 4 139980487 139980487 G C ELF2 Missense_Mutation p.L466V 0.19 tolerated(0.35) possibly_damaging(0.561) TCGA-FD-A3SQ-01 4 167675637 167675637 C G SPOCK3 Intron 0.30 TCGA-FD-A3SQ-01 4 169344916 169344916 G A DDX60L Missense_Mutation p.S647L 0.23 deleterious(0.04) benign(0.009) TCGA-FD-A3SQ-01 4 68514897 68514897 G A UBA6 Silent p.L379L 0.17 TCGA-FD-A3SQ-01 4 88226451 88226451 A T HSD17B13 Silent p.P274P 0.21 TCGA-FD-A3SQ-01 5 140263361 140263361 C A PCDHA13 Missense_Mutation p.A503E 0.22 deleterious_low_confidence(0.01) benign(0.234) TCGA-FD-A3SQ-01 5 178310335 178310335 G A ZNF354B Silent p.V294V 0.27 TCGA-FD-A3SQ-01 5 178579179 178579179 C T ADAMTS2 Silent p.G531G 0.12 TCGA-FD-A3SQ-01 5 49699204 49699204 C T EMB Missense_Mutation p.E229K 0.18 tolerated(0.35) possibly_damaging(0.839) TCGA-FD-A3SQ-01 5 55212787 55212787 C T IL31RA Missense_Mutation p.R712C 0.16 tolerated(0.42) benign(0) TCGA-FD-A3SQ-01 5 79375841 79375841 G A THBS4 Nonsense_Mutation p.W875* 0.20 TCGA-FD-A3SQ-01 5 86679590 86679590 C T RASA1 Silent p.I917I 0.19 TCGA-FD-A3SQ-01 6 132204911 132204911 C G ENPP1 Missense_Mutation p.Q770E 0.31 deleterious(0.01) benign(0.403) TCGA-FD-A3SQ-01 7 100013666 100013666 C T ZCWPW1 Missense_Mutation p.R228Q 0.08 tolerated(1) benign(0) TCGA-FD-A3SQ-01 7 49951714 49951714 A T VWC2 Missense_Mutation p.Y304F 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-FD-A3SQ-01 8 12040311 12040311 C T FAM86B1 3'UTR 0.29 TCGA-FD-A3SQ-01 8 2876065 2876065 C T CSMD1 Missense_Mutation p.V2655M 0.39 probably_damaging(0.961) TCGA-FD-A3SQ-01 8 95751649 95751649 G A DPY19L4 Missense_Mutation p.E118K 0.06 deleterious(0.04) possibly_damaging(0.841) TCGA-FD-A3SQ-01 9 125585294 125585294 C A PDCL Splice_Site p.X118_splice 0.42 TCGA-FD-A3SQ-01 9 131388682 131388682 T - SPTAN1 Frame_Shift_Del p.F2098Sfs*2 0.25 TCGA-FD-A3SQ-01 9 135802692 135802692 C A TSC1 Splice_Site p.X36_splice 0.43 TCGA-FD-A3SQ-01 X 123227957 123227974 ATGAGGGAATGGATTTTG - STAG2 In_Frame_Del p.E1224_D1229del 0.23 TCGA-FD-A3SQ-01 X 140969332 140969332 G A MAGEC3 Missense_Mutation p.G220D 0.54 tolerated(1) probably_damaging(0.982) TCGA-FD-A3SQ-01 X 146295085 146295085 G A MIR513A1 RNA 0.21 TCGA-FD-A3SQ-01 X 70331384 70331384 C T IL2RG Silent p.L2L 0.35 TCGA-FD-A3SQ-01 X 77268496 77268496 C T ATP7A Missense_Mutation p.L765F 0.50 deleterious(0.02) probably_damaging(0.938) TCGA-FD-A3SR-01 10 26505738 26505738 G T GAD2 5'UTR 0.38 TCGA-FD-A3SR-01 10 72300920 72300920 C T PALD1 Silent p.F657F 0.19 TCGA-FD-A3SR-01 11 117266864 117266864 C T CEP164 Missense_Mutation p.H1062Y 0.20 deleterious(0.02) benign(0.109) TCGA-FD-A3SR-01 11 117864081 117864081 C T IL10RA Nonsense_Mutation p.R165* 0.19 TCGA-FD-A3SR-01 11 123848028 123848028 G A OR10S1 Missense_Mutation p.T124I 0.26 deleterious(0.04) possibly_damaging(0.621) TCGA-FD-A3SR-01 11 30033452 30033452 G C KCNA4 Missense_Mutation p.F258L 0.25 deleterious(0) probably_damaging(0.989) TCGA-FD-A3SR-01 11 6191265 6191265 C T OR52B2 Missense_Mutation p.A98T 0.20 deleterious(0.02) benign(0.043) TCGA-FD-A3SR-01 11 6243787 6243787 C T FAM160A2 Missense_Mutation p.R359Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SR-01 11 64082320 64082320 A G ESRRA Missense_Mutation p.T227A 0.35 tolerated(0.16) benign(0.045) TCGA-FD-A3SR-01 11 64882277 64882277 C G TM7SF2 Silent p.L232L 0.14 TCGA-FD-A3SR-01 11 64884048 64884048 C T ZNHIT2 Missense_Mutation p.D360N 0.19 deleterious(0.02) benign(0.052) TCGA-FD-A3SR-01 11 64884237 64884237 C A ZNHIT2 Nonsense_Mutation p.E297* 0.22 TCGA-FD-A3SR-01 11 85593685 85593685 A - CCDC83 Frame_Shift_Del p.K104Sfs*10 0.15 TCGA-FD-A3SR-01 11 89774454 89774454 G A TRIM49C Silent p.K365K 0.20 TCGA-FD-A3SR-01 12 112451286 112451286 C T ERP29 Missense_Mutation p.P6L 0.18 deleterious_low_confidence(0.01) benign(0.001) TCGA-FD-A3SR-01 12 124820110 124820110 T C NCOR2 Missense_Mutation p.T2062A 0.16 benign(0.034) TCGA-FD-A3SR-01 12 130840202 130840202 G A PIWIL1 Missense_Mutation p.G465D 0.09 tolerated(0.21) benign(0.015) TCGA-FD-A3SR-01 12 131593323 131593323 G A GPR133 Missense_Mutation p.A648T 0.17 tolerated(0.06) benign(0.126) TCGA-FD-A3SR-01 12 15807190 15807190 G T EPS8 Nonsense_Mutation p.S380* 0.17 TCGA-FD-A3SR-01 12 46243818 46243818 G A ARID2 Splice_Site p.X638_splice 0.38 TCGA-FD-A3SR-01 12 46765027 46765027 C T SLC38A2 Missense_Mutation p.S17N 0.21 tolerated(0.3) probably_damaging(0.968) TCGA-FD-A3SR-01 12 53012246 53012246 G A KRT73 Silent p.S21S 0.35 TCGA-FD-A3SR-01 12 54405067 54405067 G A HOXC8 Missense_Mutation p.D211N 0.25 deleterious(0) probably_damaging(0.909) TCGA-FD-A3SR-01 12 55420612 55420612 G C NEUROD4 Missense_Mutation p.R130T 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A3SR-01 12 56334764 56334764 G A DGKA Silent p.R367R 0.20 TCGA-FD-A3SR-01 13 36909198 36909198 G C SPG20 Missense_Mutation p.S257C 0.24 deleterious(0.04) possibly_damaging(0.775) TCGA-FD-A3SR-01 14 102550835 102550835 C G HSP90AA1 Missense_Mutation p.D472H 0.18 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3SR-01 14 106780963 106780963 C G IGHV4-28 5'UTR 0.10 TCGA-FD-A3SR-01 14 23393862 23393862 G C PRMT5 Missense_Mutation p.I332M 0.10 tolerated(0.14) possibly_damaging(0.877) TCGA-FD-A3SR-01 14 75265975 75265975 A G YLPM1 Silent p.E1325E 0.21 TCGA-FD-A3SR-01 15 31793915 31793915 C G OTUD7A Missense_Mutation p.Q376H 0.13 tolerated(0.11) probably_damaging(0.993) TCGA-FD-A3SR-01 15 40917795 40917795 G T CASC5 Missense_Mutation p.R1804I 0.11 deleterious(0.02) possibly_damaging(0.693) TCGA-FD-A3SR-01 16 28602255 28602255 G A CCDC101 Missense_Mutation p.R255Q 0.19 tolerated(0.4) benign(0.003) TCGA-FD-A3SR-01 16 67695381 67695381 C A PARD6A Missense_Mutation p.F29L 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-FD-A3SR-01 16 68255131 68255131 C T NFATC3 Intron 0.25 TCGA-FD-A3SR-01 16 71220684 71220684 C A HYDIN Nonsense_Mutation p.E39* 0.15 TCGA-FD-A3SR-01 17 3352265 3352265 T C SPATA22 Missense_Mutation p.K170E 0.28 tolerated(0.99) benign(0.167) TCGA-FD-A3SR-01 17 7577104 7577105 - GGACAGGC TP53 Frame_Shift_Ins p.G279Pfs*69 0.34 TCGA-FD-A3SR-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.20 deleterious(0) possibly_damaging(0.9) TCGA-FD-A3SR-01 17 7808955 7808955 G C CHD3 Missense_Mutation p.K1444N 0.24 possibly_damaging(0.728) TCGA-FD-A3SR-01 17 78113852 78113852 C G EIF4A3 Missense_Mutation p.D154H 0.06 deleterious(0.02) probably_damaging(1) TCGA-FD-A3SR-01 17 78115630 78115630 C T EIF4A3 Missense_Mutation p.G87E 0.05 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SR-01 18 13645279 13645279 C T LDLRAD4 Missense_Mutation p.P182S 0.09 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 18 2892374 2892374 C T EMILIN2 Missense_Mutation p.S750L 0.11 tolerated(0.09) benign(0.009) TCGA-FD-A3SR-01 18 31326233 31326233 A G ASXL3 Missense_Mutation p.K2141E 0.28 probably_damaging(0.996) TCGA-FD-A3SR-01 18 47802039 47802039 G - MBD1 Frame_Shift_Del p.I242Sfs*80 0.15 TCGA-FD-A3SR-01 18 50976988 50976988 C T DCC Silent p.I1116I 0.26 TCGA-FD-A3SR-01 18 77170646 77170646 C T NFATC1 Missense_Mutation p.S111L 0.15 deleterious(0) benign(0.371) TCGA-FD-A3SR-01 19 10402336 10402336 G A ICAM5 Missense_Mutation p.R175Q 0.15 tolerated(0.06) benign(0.099) TCGA-FD-A3SR-01 19 12721779 12721779 G T ZNF791 5'UTR 0.23 TCGA-FD-A3SR-01 19 15366963 15366963 C A BRD4 Nonsense_Mutation p.E555* 0.15 TCGA-FD-A3SR-01 19 17760337 17760337 A G UNC13A Missense_Mutation p.I500T 0.31 deleterious(0) benign(0.223) TCGA-FD-A3SR-01 19 1828181 1828181 G T REXO1 Missense_Mutation p.P203T 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 19 24102939 24102939 G C ZNF726 Intron 0.17 TCGA-FD-A3SR-01 19 41712581 41712581 G T CYP2S1 3'UTR 0.07 TCGA-FD-A3SR-01 19 43376193 43376193 C G PSG1 Missense_Mutation p.E145D 0.08 deleterious(0.03) benign(0.002) TCGA-FD-A3SR-01 19 4362650 4362650 G A SH3GL1 Missense_Mutation p.S271F 0.22 tolerated(0.13) benign(0.005) TCGA-FD-A3SR-01 19 45854218 45854218 G C KLC3 Missense_Mutation p.K462N 0.08 deleterious(0) benign(0.037) TCGA-FD-A3SR-01 19 45895561 45895561 C T PPP1R13L Silent p.P464P 0.13 TCGA-FD-A3SR-01 19 51410066 51410066 G A KLK4 3'UTR 0.45 TCGA-FD-A3SR-01 19 58005153 58005153 G T ZNF419 Nonsense_Mutation p.E411* 0.17 TCGA-FD-A3SR-01 19 5931433 5931433 A T RANBP3 Missense_Mutation p.D225E 0.41 tolerated(0.51) benign(0.002) TCGA-FD-A3SR-01 1 110128959 110128959 G A GNAI3 Missense_Mutation p.E238K 0.26 tolerated(0.1) benign(0.055) TCGA-FD-A3SR-01 1 111965546 111965546 C G OVGP1 Intron 0.20 TCGA-FD-A3SR-01 1 12806282 12806282 T C C1orf158 5'UTR 0.32 TCGA-FD-A3SR-01 1 149859020 149859020 G C HIST2H2AB 3'UTR 0.20 TCGA-FD-A3SR-01 1 151171506 151171506 G C PIP5K1A Missense_Mutation p.V12L 0.11 tolerated_low_confidence(0.3) unknown(0) TCGA-FD-A3SR-01 1 156844786 156844786 A T NTRK1 Missense_Mutation p.K447M 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 1 171086520 171086520 C T FMO3 Missense_Mutation p.H513Y 0.56 tolerated(1) benign(0.001) TCGA-FD-A3SR-01 1 175355234 175355234 C T TNR Missense_Mutation p.E571K 0.06 tolerated(0.17) benign(0.096) TCGA-FD-A3SR-01 1 177927476 177927476 C T SEC16B Missense_Mutation p.A386T 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A3SR-01 1 183087279 183087279 G C LAMC1 Missense_Mutation p.R663T 0.21 tolerated(0.08) probably_damaging(0.932) TCGA-FD-A3SR-01 1 19497352 19497352 C T UBR4 Missense_Mutation p.E1183K 0.49 benign(0.178) TCGA-FD-A3SR-01 1 208234158 208234158 C A PLXNA2 Nonsense_Mutation p.E871* 0.40 TCGA-FD-A3SR-01 1 21183933 21183933 C T EIF4G3 Missense_Mutation p.R1051Q 0.29 deleterious(0) probably_damaging(0.97) TCGA-FD-A3SR-01 1 240966262 240966262 G A RGS7 Missense_Mutation p.S434L 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 1 243328323 243328323 G A CEP170 Missense_Mutation p.S980L 0.42 deleterious(0.04) benign(0.19) TCGA-FD-A3SR-01 1 248512486 248512486 G C OR14C36 Missense_Mutation p.R137P 0.10 deleterious(0.02) benign(0.188) TCGA-FD-A3SR-01 1 248637272 248637272 C T OR2T3 Silent p.C207C 0.66 TCGA-FD-A3SR-01 1 27059176 27059176 C G ARID1A Missense_Mutation p.Q605E 0.13 benign(0.042) TCGA-FD-A3SR-01 1 34663196 34663196 G A C1orf94 Missense_Mutation p.D231N 0.29 tolerated(0.22) benign(0.222) TCGA-FD-A3SR-01 1 40214744 40214744 C G PPIE Silent p.L226L 0.20 TCGA-FD-A3SR-01 1 43778257 43778257 C A TIE1 Missense_Mutation p.L638I 0.46 tolerated(0.4) benign(0.002) TCGA-FD-A3SR-01 1 46495137 46495137 G C MAST2 Splice_Site p.X740_splice 0.07 TCGA-FD-A3SR-01 1 7724545 7724545 G A CAMTA1 Silent p.T646T 0.17 TCGA-FD-A3SR-01 1 93581036 93581036 G A MTF2 Missense_Mutation p.A165T 0.27 deleterious(0) benign(0.356) TCGA-FD-A3SR-01 20 21321376 21321376 C T XRN2 Silent p.F432F 0.04 TCGA-FD-A3SR-01 20 30071976 30071976 G A REM1 Missense_Mutation p.A214T 0.61 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SR-01 20 31427538 31427538 C T MAPRE1 Intron 0.17 TCGA-FD-A3SR-01 20 45905274 45905274 C G ZMYND8 Missense_Mutation p.D422H 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A3SR-01 20 62493636 62493636 T C ABHD16B Missense_Mutation p.V248A 0.26 deleterious(0) benign(0.054) TCGA-FD-A3SR-01 22 44333050 44333050 G C PNPLA3 Missense_Mutation p.A293P 0.26 tolerated(0.2) benign(0.002) TCGA-FD-A3SR-01 2 105979821 105979821 G A FHL2 Silent p.R203R 0.22 TCGA-FD-A3SR-01 2 121747574 121747574 G A GLI2 Missense_Mutation p.A1362T 0.36 tolerated(0.18) benign(0.002) TCGA-FD-A3SR-01 2 178936981 178936981 C T PDE11A Missense_Mutation p.A62T 0.33 tolerated(0.35) benign(0.007) TCGA-FD-A3SR-01 2 38978486 38978486 G C SRSF7 5'UTR 0.48 TCGA-FD-A3SR-01 2 46840834 46840834 C G PIGF Missense_Mutation p.E107Q 0.20 deleterious(0) possibly_damaging(0.906) TCGA-FD-A3SR-01 2 46842192 46842192 C G PIGF Missense_Mutation p.E38Q 0.14 tolerated(0.11) benign(0.219) TCGA-FD-A3SR-01 2 64322381 64322381 A C PELI1 Missense_Mutation p.L238V 0.36 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 2 79255529 79255529 C T REG3G 3'UTR 0.20 TCGA-FD-A3SR-01 2 85570773 85570773 A T RETSAT Missense_Mutation p.L561H 0.38 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 3 108719425 108719425 C T MORC1 Silent p.T722T 0.05 TCGA-FD-A3SR-01 3 129304863 129304863 C T PLXND1 Missense_Mutation p.E595K 0.20 tolerated(0.07) benign(0.022) TCGA-FD-A3SR-01 3 15621475 15621475 T C HACL1 Missense_Mutation p.M249V 0.40 deleterious(0) probably_damaging(0.936) TCGA-FD-A3SR-01 3 16268952 16268952 G T GALNT15 Missense_Mutation p.G622V 0.42 tolerated(0.06) probably_damaging(0.995) TCGA-FD-A3SR-01 3 179322629 179322629 G T NDUFB5 Missense_Mutation p.R9L 0.18 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SR-01 3 44692638 44692638 G A ZNF35 Missense_Mutation p.E27K 0.14 tolerated_low_confidence(0.06) benign(0.073) TCGA-FD-A3SR-01 3 44692740 44692740 G C ZNF35 Missense_Mutation p.E61Q 0.11 tolerated_low_confidence(0.6) benign(0.002) TCGA-FD-A3SR-01 3 46621463 46621463 G C TDGF1 Missense_Mutation p.D121H 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-FD-A3SR-01 3 48623896 48623896 G C COL7A1 Missense_Mutation p.T1140R 0.41 unknown(0) TCGA-FD-A3SR-01 3 50357493 50357493 C T HYAL2 Missense_Mutation p.R143H 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A3SR-01 3 51747292 51747292 C G GRM2 Silent p.L418L 0.32 TCGA-FD-A3SR-01 3 52248035 52248035 G C ALAS1 Splice_Site p.X588_splice 0.19 TCGA-FD-A3SR-01 3 75478362 75478362 C T FAM86DP RNA 0.07 TCGA-FD-A3SR-01 4 103867833 103867833 T C SLC9B1 Missense_Mutation p.I166V 0.52 tolerated(1) benign(0.023) TCGA-FD-A3SR-01 4 115544466 115544466 G A UGT8 Missense_Mutation p.G144R 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3SR-01 4 143003291 143003291 G - INPP4B Frame_Shift_Del p.D847Tfs*7 0.26 TCGA-FD-A3SR-01 4 145573799 145573799 G C HHIP Missense_Mutation p.E108Q 0.16 tolerated(0.28) benign(0.133) TCGA-FD-A3SR-01 4 145635380 145635380 G A HHIP Missense_Mutation p.S476N 0.23 tolerated(0.66) benign(0) TCGA-FD-A3SR-01 4 164271826 164271826 C T NPY5R Missense_Mutation p.S134L 0.20 tolerated(0.22) possibly_damaging(0.883) TCGA-FD-A3SR-01 4 170608906 170608906 C A CLCN3 Nonsense_Mutation p.S139* 0.16 TCGA-FD-A3SR-01 4 173961175 173961175 C T GALNTL6 Missense_Mutation p.S577F 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-FD-A3SR-01 4 1985773 1985773 C T NELFA Silent p.A379A 0.22 TCGA-FD-A3SR-01 4 3319746 3319746 C T RGS12 Nonsense_Mutation p.R617* 0.19 TCGA-FD-A3SR-01 4 48035086 48035086 G C NIPAL1 Missense_Mutation p.L149F 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-FD-A3SR-01 4 5570351 5570351 G A EVC2 Missense_Mutation p.S1126L 0.39 deleterious(0.03) benign(0.085) TCGA-FD-A3SR-01 4 71021792 71021792 G A C4orf40 Missense_Mutation p.E25K 0.06 tolerated(0.25) benign(0.329) TCGA-FD-A3SR-01 5 112327847 112327847 C G DCP2 Missense_Mutation p.Q79E 0.20 tolerated(0.09) benign(0.012) TCGA-FD-A3SR-01 5 113698511 113698511 G A KCNN2 Silent p.P13P 0.57 TCGA-FD-A3SR-01 5 19571845 19571845 C G CDH18 Missense_Mutation p.D366H 0.25 deleterious(0.02) probably_damaging(1) TCGA-FD-A3SR-01 5 42718627 42718627 G A GHR Missense_Mutation p.D340N 0.47 deleterious(0.02) probably_damaging(1) TCGA-FD-A3SR-01 5 64100077 64100077 G C CWC27 Missense_Mutation p.E268Q 0.33 tolerated(0.3) benign(0.166) TCGA-FD-A3SR-01 5 76128611 76128611 C G F2RL1 Missense_Mutation p.S60C 0.31 deleterious(0.02) benign(0.029) TCGA-FD-A3SR-01 5 80600669 80600669 A C ZCCHC9 Silent p.G31G 0.31 TCGA-FD-A3SR-01 6 151130805 151130805 C T PLEKHG1 Missense_Mutation p.R405C 0.31 deleterious(0) probably_damaging(0.915) TCGA-FD-A3SR-01 6 152551705 152551705 G A SYNE1 Nonsense_Mutation p.Q7058* 0.11 TCGA-FD-A3SR-01 6 33244259 33244259 C T RPS18 3'UTR 0.39 TCGA-FD-A3SR-01 6 33284496 33284496 C T ZBTB22 Silent p.R66R 0.40 TCGA-FD-A3SR-01 6 36168155 36168155 C T BRPF3 Missense_Mutation p.S19F 0.07 deleterious(0) possibly_damaging(0.779) TCGA-FD-A3SR-01 6 37622222 37622222 G T MDGA1 Silent p.L270L 0.33 TCGA-FD-A3SR-01 6 37622284 37622284 G C MDGA1 Missense_Mutation p.L250V 0.35 tolerated(0.34) probably_damaging(0.994) TCGA-FD-A3SR-01 6 41254347 41254347 G A TREM1 Missense_Mutation p.S16L 0.11 tolerated(0.11) benign(0.052) TCGA-FD-A3SR-01 6 43970874 43970874 C T C6orf223 3'UTR 0.23 TCGA-FD-A3SR-01 6 46660807 46660807 C G TDRD6 Missense_Mutation p.Q1648E 0.11 tolerated(0.61) benign(0.011) TCGA-FD-A3SR-01 6 56391242 56391242 C T DST Missense_Mutation p.D3393N 0.21 benign(0.104) TCGA-FD-A3SR-01 6 56420230 56420230 G T DST Missense_Mutation p.L2394M 0.34 possibly_damaging(0.612) TCGA-FD-A3SR-01 6 57012841 57012841 G C ZNF451 Missense_Mutation p.R653P 0.40 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 6 90573429 90573429 T A CASP8AP2 RNA 0.62 TCGA-FD-A3SR-01 7 122261661 122261661 C T CADPS2 Silent p.S326S 0.18 TCGA-FD-A3SR-01 7 129680811 129680811 G T ZC3HC1 Missense_Mutation p.P130Q 0.20 tolerated(0.26) benign(0.056) TCGA-FD-A3SR-01 7 154595651 154595651 G C DPP6 Missense_Mutation p.E495D 0.25 deleterious(0.01) benign(0.161) TCGA-FD-A3SR-01 7 30094400 30094400 C G PLEKHA8 Nonsense_Mutation p.S291* 0.24 TCGA-FD-A3SR-01 7 47930253 47930253 T C PKD1L1 Silent p.Q854Q 0.17 TCGA-FD-A3SR-01 7 64168367 64168367 A T ZNF107 Missense_Mutation p.N562I 0.37 tolerated(0.26) benign(0.044) TCGA-FD-A3SR-01 7 88965564 88965564 G C ZNF804B Missense_Mutation p.E1090Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SR-01 8 100866463 100866463 G T VPS13B Missense_Mutation p.A3641S 0.54 tolerated(0.44) possibly_damaging(0.515) TCGA-FD-A3SR-01 8 145113243 145113243 G A OPLAH Missense_Mutation p.S283F 0.27 tolerated(0.31) benign(0.159) TCGA-FD-A3SR-01 8 26628136 26628136 C T ADRA1A Missense_Mutation p.V311I 0.23 tolerated(0.64) benign(0.023) TCGA-FD-A3SR-01 8 27954743 27954743 C T ELP3 Silent p.L9L 0.06 TCGA-FD-A3SR-01 8 28384671 28384671 G A FZD3 Missense_Mutation p.D132N 0.26 tolerated(0.33) benign(0.091) TCGA-FD-A3SR-01 8 72946563 72946563 T A TRPA1 Missense_Mutation p.T869S 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SR-01 8 72964852 72964852 G A TRPA1 Missense_Mutation p.T598M 0.24 tolerated(0.13) benign(0.066) TCGA-FD-A3SR-01 9 107580989 107580989 G A ABCA1 Silent p.L1139L 0.06 TCGA-FD-A3SR-01 9 113149637 113149637 T C SVEP1 Missense_Mutation p.S3330G 0.26 benign(0.314) TCGA-FD-A3SR-01 9 131388859 131388859 G A SPTAN1 Missense_Mutation p.E2157K 0.27 tolerated(0.1) benign(0.119) TCGA-FD-A3SR-01 9 136277903 136277903 G A REXO4 Silent p.F237F 0.32 TCGA-FD-A3SR-01 9 137710579 137710579 G A COL5A1 Silent p.P1436P 0.25 TCGA-FD-A3SR-01 9 139393627 139393627 C T NOTCH1 Missense_Mutation p.V2007M 0.40 deleterious(0) probably_damaging(0.986) TCGA-FD-A3SR-01 9 139739888 139739888 C T C9orf172 Missense_Mutation p.S341F 0.23 deleterious(0) benign(0.053) TCGA-FD-A3SR-01 9 32633772 32633772 G A TAF1L Silent p.T602T 0.31 TCGA-FD-A3SR-01 X 101395644 101395644 G A TCEAL6 3'UTR 0.21 TCGA-FD-A3SR-01 X 139038603 139038603 C T CXorf66 Missense_Mutation p.E180K 0.30 tolerated(0.26) possibly_damaging(0.801) TCGA-FD-A3SR-01 X 144337473 144337473 C G SPANXN1 3'UTR 0.67 TCGA-FD-A3SR-01 X 14891876 14891876 G T MOSPD2 Silent p.V25V 0.06 TCGA-FD-A3SR-01 X 153043091 153043091 G A PLXNB3 Missense_Mutation p.E1760K 0.05 tolerated(0.07) benign(0.417) TCGA-FD-A3SR-01 X 6069450 6069450 T A NLGN4X Missense_Mutation p.M20L 0.66 tolerated_low_confidence(0.78) benign(0) TCGA-FD-A3SS-01 10 102689105 102689105 G T FAM178A Missense_Mutation p.D692Y 0.62 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 10 102740934 102740934 G C SEMA4G Silent p.L551L 0.12 TCGA-FD-A3SS-01 10 102741296 102741296 G A MRPL43 Silent p.I220I 0.21 TCGA-FD-A3SS-01 10 120923669 120923669 C G SFXN4 Missense_Mutation p.D51H 0.62 deleterious(0) probably_damaging(0.968) TCGA-FD-A3SS-01 10 15120588 15120588 C G ACBD7 Missense_Mutation p.D70H 0.05 deleterious(0) probably_damaging(0.972) TCGA-FD-A3SS-01 10 18940106 18940106 C G NSUN6 Missense_Mutation p.L9F 0.34 tolerated(0.23) benign(0.076) TCGA-FD-A3SS-01 10 29747377 29747377 C T SVIL Missense_Mutation p.D2182N 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A3SS-01 10 33201009 33201009 C G ITGB1 Missense_Mutation p.D505H 0.22 tolerated(0.09) possibly_damaging(0.863) TCGA-FD-A3SS-01 10 38652442 38652442 C T HSD17B7P2 RNA 0.62 TCGA-FD-A3SS-01 10 44112902 44112902 C T ZNF485 3'UTR 0.07 TCGA-FD-A3SS-01 10 48413872 48413872 C T GDF2 Silent p.L332L 0.16 TCGA-FD-A3SS-01 10 49440294 49440294 G A FRMPD2 Silent p.L344L 0.30 TCGA-FD-A3SS-01 10 50944540 50944540 C G OGDHL Missense_Mutation p.E873Q 0.21 deleterious(0.01) probably_damaging(0.917) TCGA-FD-A3SS-01 10 51584673 51584673 G C NCOA4 Missense_Mutation p.E274Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SS-01 10 5789126 5789126 G A FAM208B Missense_Mutation p.E1248K 0.36 tolerated(0.07) benign(0.098) TCGA-FD-A3SS-01 10 6104059 6104059 C T IL2RA Missense_Mutation p.C19Y 0.10 tolerated(0.27) benign(0.03) TCGA-FD-A3SS-01 10 61926588 61926588 C T ANK3 Missense_Mutation p.D849N 0.28 probably_damaging(0.965) TCGA-FD-A3SS-01 10 70276532 70276532 G A SLC25A16 Missense_Mutation p.H67Y 0.31 deleterious(0.04) benign(0.015) TCGA-FD-A3SS-01 10 81932588 81932588 T C ANXA11 Silent p.P10P 0.31 TCGA-FD-A3SS-01 10 88651946 88651946 C T BMPR1A Missense_Mutation p.S98L 0.24 tolerated(0.45) probably_damaging(0.999) TCGA-FD-A3SS-01 10 91066692 91066692 G A IFIT2 Missense_Mutation p.D327N 0.09 tolerated(0.5) benign(0.037) TCGA-FD-A3SS-01 10 91469117 91469117 C T KIF20B Silent p.L84L 0.55 TCGA-FD-A3SS-01 10 97096663 97096663 G A SORBS1 Missense_Mutation p.S1085L 0.16 tolerated_low_confidence(0.1) benign(0.005) TCGA-FD-A3SS-01 10 97101052 97101052 G A SORBS1 Missense_Mutation p.S887F 0.06 deleterious(0) probably_damaging(0.916) TCGA-FD-A3SS-01 10 98742417 98742417 G C C10orf12 Missense_Mutation p.E424Q 0.06 tolerated(0.16) benign(0.017) TCGA-FD-A3SS-01 11 117094889 117094889 C G PCSK7 Missense_Mutation p.G320A 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 11 123597577 123597577 C T ZNF202 Missense_Mutation p.E359K 0.37 tolerated(0.1) benign(0.341) TCGA-FD-A3SS-01 11 124412979 124412979 G A OR8B12 Missense_Mutation p.S191F 0.39 deleterious_low_confidence(0.01) benign(0.049) TCGA-FD-A3SS-01 11 130319039 130319039 C T ADAMTS15 Silent p.I57I 0.12 TCGA-FD-A3SS-01 11 14529258 14529258 C T PSMA1 Missense_Mutation p.D233N 0.55 tolerated(0.08) benign(0.004) TCGA-FD-A3SS-01 11 15199878 15199878 A C INSC Missense_Mutation p.Q202P 0.69 tolerated(0.09) benign(0.249) TCGA-FD-A3SS-01 11 18636604 18636604 G C SPTY2D1 Nonsense_Mutation p.S406* 0.13 TCGA-FD-A3SS-01 11 22360119 22360119 G A SLC17A6 Missense_Mutation p.E14K 0.39 deleterious(0) possibly_damaging(0.493) TCGA-FD-A3SS-01 11 24759813 24759813 G A LUZP2 Missense_Mutation p.E100K 0.24 deleterious(0.02) possibly_damaging(0.54) TCGA-FD-A3SS-01 11 36302292 36302292 G A COMMD9 Silent p.S49S 0.08 TCGA-FD-A3SS-01 11 44098828 44098828 G A ACCS Splice_Site p.X186_splice 0.18 TCGA-FD-A3SS-01 11 56043601 56043601 G A OR5T1 Missense_Mutation p.A163T 0.38 tolerated(0.28) benign(0.143) TCGA-FD-A3SS-01 11 58352326 58352326 C T ZFP91 Intron 0.41 TCGA-FD-A3SS-01 11 64358873 64358873 G A SLC22A12 5'UTR 0.14 TCGA-FD-A3SS-01 11 65393495 65393495 C T PCNXL3 Missense_Mutation p.P1117S 0.18 tolerated(0.92) benign(0.008) TCGA-FD-A3SS-01 11 65412521 65412521 C T SIPA1 Silent p.F360F 0.17 TCGA-FD-A3SS-01 11 66099589 66099589 C T RIN1 3'UTR 0.14 TCGA-FD-A3SS-01 11 66100867 66100867 C T RIN1 Silent p.L579L 0.09 TCGA-FD-A3SS-01 11 66360334 66360334 C T CCDC87 Silent p.A51A 0.07 TCGA-FD-A3SS-01 11 66456633 66456633 G A SPTBN2 Nonsense_Mutation p.Q1990* 0.16 TCGA-FD-A3SS-01 11 67075889 67075889 G C SSH3 Missense_Mutation p.E341Q 0.23 deleterious(0.02) probably_damaging(1) TCGA-FD-A3SS-01 11 68773711 68773711 C T MRGPRF Missense_Mutation p.E23K 0.29 deleterious(0.02) benign(0.254) TCGA-FD-A3SS-01 11 68838873 68838873 C T TPCN2 Silent p.F315F 0.19 TCGA-FD-A3SS-01 11 70200458 70200458 G A PPFIA1 Missense_Mutation p.E739K 0.09 deleterious(0.04) benign(0.43) TCGA-FD-A3SS-01 11 73825601 73825601 C T C2CD3 Missense_Mutation p.E520K 0.19 tolerated(0.11) benign(0.073) TCGA-FD-A3SS-01 11 76892492 76892492 C T MYO7A Missense_Mutation p.R921W 0.38 deleterious(0) probably_damaging(0.953) TCGA-FD-A3SS-01 11 82643638 82643638 G A C11orf82 Missense_Mutation p.E420K 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 11 85374910 85374910 G A CREBZF Missense_Mutation p.S337L 0.14 deleterious(0) probably_damaging(0.978) TCGA-FD-A3SS-01 11 85438975 85438975 G C SYTL2 5'Flank 0.34 TCGA-FD-A3SS-01 11 85445719 85445719 G A SYTL2 Missense_Mutation p.S217L 0.35 tolerated(0.16) benign(0.001) TCGA-FD-A3SS-01 11 86056533 86056533 T C C11orf73 Intron 0.33 TCGA-FD-A3SS-01 11 88583124 88583124 C T GRM5 Silent p.L287L 0.40 TCGA-FD-A3SS-01 11 93821974 93821974 C G HEPHL1 Missense_Mutation p.Q712E 0.31 tolerated(0.37) benign(0.094) TCGA-FD-A3SS-01 12 110778732 110778732 G C ATP2A2 Missense_Mutation p.R677P 0.27 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SS-01 12 110874486 110874486 G A ARPC3 Silent p.C85C 0.19 TCGA-FD-A3SS-01 12 111318975 111318975 C G CCDC63 Missense_Mutation p.S243C 0.07 tolerated(0.19) benign(0.036) TCGA-FD-A3SS-01 12 113599123 113599123 C A DDX54 Missense_Mutation p.D789Y 0.28 deleterious(0) benign(0.123) TCGA-FD-A3SS-01 12 123345546 123345546 G - HIP1R Frame_Shift_Del p.A951Pfs*26 0.33 TCGA-FD-A3SS-01 12 132445298 132445298 C T EP400 Missense_Mutation p.S45L 0.52 unknown(0) TCGA-FD-A3SS-01 12 133732614 133732614 G C ZNF10 Missense_Mutation p.R261T 0.19 tolerated(0.52) probably_damaging(0.939) TCGA-FD-A3SS-01 12 20903661 20903661 C T SLCO1C1 Silent p.L617L 0.19 TCGA-FD-A3SS-01 12 32945277 32945277 G C PKP2 3'UTR 0.16 TCGA-FD-A3SS-01 12 43825236 43825236 G A ADAMTS20 Missense_Mutation p.H1054Y 0.60 tolerated(0.15) possibly_damaging(0.491) TCGA-FD-A3SS-01 12 43944794 43944794 G A ADAMTS20 Missense_Mutation p.S124L 0.69 tolerated(0.12) benign(0.012) TCGA-FD-A3SS-01 12 46320089 46320089 G A SCAF11 Missense_Mutation p.S1132L 0.25 deleterious(0) benign(0.236) TCGA-FD-A3SS-01 12 53207850 53207850 G C KRT4 5'UTR 0.34 TCGA-FD-A3SS-01 12 53242451 53242451 G A KRT78 Silent p.I88I 0.30 TCGA-FD-A3SS-01 12 53607319 53607319 C T RARG Missense_Mutation p.E327K 0.58 deleterious(0) probably_damaging(0.986) TCGA-FD-A3SS-01 12 72956777 72956777 G C TRHDE Missense_Mutation p.D622H 0.59 deleterious(0) possibly_damaging(0.707) TCGA-FD-A3SS-01 12 9229990 9229990 G A A2M Silent p.L1101L 0.35 TCGA-FD-A3SS-01 12 97157932 97157932 C T C12orf55 Missense_Mutation p.P2682S 0.20 tolerated(0.57) benign(0) TCGA-FD-A3SS-01 13 114009747 114009747 G T GRTP1 Silent p.V77V 0.41 TCGA-FD-A3SS-01 13 114077230 114077230 G A ADPRHL1 Silent p.L324L 0.06 TCGA-FD-A3SS-01 13 114150069 114150069 C T TMCO3 Missense_Mutation p.S58L 0.38 tolerated(0.05) benign(0.044) TCGA-FD-A3SS-01 13 115090645 115090645 C T CHAMP1 Missense_Mutation p.S443L 0.32 deleterious(0) possibly_damaging(0.625) TCGA-FD-A3SS-01 13 20039688 20039688 G A TPTE2 Nonsense_Mutation p.R177* 0.44 TCGA-FD-A3SS-01 13 23915245 23915246 - TTC SACS In_Frame_Ins p.E923dup 0.32 TCGA-FD-A3SS-01 13 25283562 25283562 C T ATP12A Missense_Mutation p.R858C 0.17 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SS-01 13 32915264 32915264 G A BRCA2 Missense_Mutation p.E2258K 0.09 tolerated(1) benign(0) TCGA-FD-A3SS-01 13 46103990 46103990 G A COG3 Silent p.L765L 0.61 TCGA-FD-A3SS-01 13 52605165 52605165 C T UTP14C Missense_Mutation p.S742L 0.09 deleterious(0) benign(0.434) TCGA-FD-A3SS-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.11 deleterious(0) probably_damaging(0.982) TCGA-FD-A3SS-01 14 102552238 102552238 G A HSP90AA1 Missense_Mutation p.S251F 0.05 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-FD-A3SS-01 14 102749865 102749865 C G MOK Silent p.L24L 0.38 TCGA-FD-A3SS-01 14 105243078 105243078 G T AKT1 Silent p.R69R 0.25 TCGA-FD-A3SS-01 14 105406884 105406884 C T AHNAK2 Silent p.K4968K 0.37 TCGA-FD-A3SS-01 14 105413428 105413428 C G AHNAK2 Missense_Mutation p.R2787T 0.35 benign(0.063) TCGA-FD-A3SS-01 14 106725385 106725385 A T IGHV3-23 Missense_Mutation p.V56D 0.21 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-FD-A3SS-01 14 106815956 106815956 G A IGHV3-33 Silent p.L39L 0.23 TCGA-FD-A3SS-01 14 23445703 23445703 C G AJUBA Missense_Mutation p.E401Q 0.20 deleterious(0) possibly_damaging(0.727) TCGA-FD-A3SS-01 14 23456450 23456450 C G C14orf93 Missense_Mutation p.E531Q 0.12 tolerated_low_confidence(0.09) probably_damaging(0.969) TCGA-FD-A3SS-01 14 23792641 23792641 C T PABPN1 Missense_Mutation p.S197L 0.10 tolerated(0.07) possibly_damaging(0.811) TCGA-FD-A3SS-01 14 24702240 24702240 A T GMPR2 5'UTR 0.36 TCGA-FD-A3SS-01 14 24799114 24799114 G A ADCY4 Missense_Mutation p.S390L 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 14 31074728 31074728 G C G2E3 Missense_Mutation p.R343T 0.22 tolerated(0.12) possibly_damaging(0.478) TCGA-FD-A3SS-01 14 39769065 39769065 C T CTAGE5 Intron 0.36 TCGA-FD-A3SS-01 14 52520475 52520475 G T NID2 Missense_Mutation p.N417K 0.23 tolerated(0.42) benign(0.003) TCGA-FD-A3SS-01 14 55169071 55169071 G A SAMD4A Missense_Mutation p.R163Q 0.32 tolerated(0.13) benign(0.361) TCGA-FD-A3SS-01 14 55618550 55618550 C G DLGAP5 Missense_Mutation p.G744A 0.19 tolerated(0.59) benign(0.001) TCGA-FD-A3SS-01 14 58604778 58604778 G C C14orf37 Missense_Mutation p.F433L 0.13 tolerated(1) benign(0.294) TCGA-FD-A3SS-01 14 58604814 58604814 G A C14orf37 Silent p.F421F 0.14 TCGA-FD-A3SS-01 14 65198192 65198192 C T PLEKHG3 Silent p.F265F 0.31 TCGA-FD-A3SS-01 14 77491632 77491632 C T IRF2BPL 3'UTR 0.42 TCGA-FD-A3SS-01 14 77916080 77916080 C T VIPAS39 Missense_Mutation p.G120E 0.38 tolerated(0.24) benign(0.042) TCGA-FD-A3SS-01 14 79269994 79269994 G C NRXN3 Missense_Mutation p.M319I 0.38 deleterious(0.03) possibly_damaging(0.747) TCGA-FD-A3SS-01 14 88450815 88450815 G A GALC Nonsense_Mutation p.Q169* 0.36 TCGA-FD-A3SS-01 14 89034385 89034385 G A ZC3H14 Missense_Mutation p.E28K 0.18 deleterious(0) probably_damaging(0.996) TCGA-FD-A3SS-01 14 90416473 90416473 G A EFCAB11 Missense_Mutation p.S62F 0.30 tolerated(0.16) benign(0.005) TCGA-FD-A3SS-01 14 90735763 90735763 G C PSMC1 Missense_Mutation p.E302Q 0.13 tolerated(0.08) benign(0.084) TCGA-FD-A3SS-01 14 95108138 95108138 G A SERPINA13P RNA 0.40 TCGA-FD-A3SS-01 15 25321117 25321117 G A SNORD116-11 RNA 0.10 TCGA-FD-A3SS-01 15 25473926 25473926 G C SNORD115-33 5'Flank 0.32 TCGA-FD-A3SS-01 15 26793038 26793038 G C GABRB3 Missense_Mutation p.L442V 0.45 tolerated(0.2) possibly_damaging(0.576) TCGA-FD-A3SS-01 15 27193135 27193135 A G GABRA5 Missense_Mutation p.M382V 0.44 tolerated(0.72) benign(0.001) TCGA-FD-A3SS-01 15 27725975 27725975 G C GABRG3 Intron 0.27 TCGA-FD-A3SS-01 15 31354887 31354887 G A TRPM1 Silent p.L345L 0.05 TCGA-FD-A3SS-01 15 34159807 34159807 G A AVEN Silent p.L288L 0.18 TCGA-FD-A3SS-01 15 40265139 40265139 G C EIF2AK4 Missense_Mutation p.W528C 0.05 deleterious(0) probably_damaging(0.986) TCGA-FD-A3SS-01 15 41228778 41228778 C T DLL4 Silent p.A531A 0.44 TCGA-FD-A3SS-01 15 41377728 41377728 C T INO80 Missense_Mutation p.E238K 0.05 tolerated(0.1) benign(0.204) TCGA-FD-A3SS-01 15 43044650 43044650 C T TTBK2 Missense_Mutation p.D932N 0.30 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-FD-A3SS-01 15 50911948 50911948 G C TRPM7 Silent p.V496V 0.08 TCGA-FD-A3SS-01 15 58256149 58256149 G A ALDH1A2 Silent p.S340S 0.24 TCGA-FD-A3SS-01 15 72581516 72581516 G A CELF6 Silent p.S331S 0.38 TCGA-FD-A3SS-01 15 74240184 74240184 G A LOXL1 Missense_Mutation p.D515N 0.09 tolerated(0.12) probably_damaging(0.946) TCGA-FD-A3SS-01 15 76673758 76673758 G T SCAPER Missense_Mutation p.F1222L 0.20 tolerated(0.3) benign(0.113) TCGA-FD-A3SS-01 15 76673922 76673922 G A SCAPER Missense_Mutation p.P1168S 0.24 tolerated(0.07) benign(0.046) TCGA-FD-A3SS-01 15 77473256 77473256 G A PEAK1 Missense_Mutation p.S338L 0.05 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SS-01 15 83295967 83295967 C T CPEB1 Missense_Mutation p.R56Q 0.25 deleterious_low_confidence(0.04) benign(0.072) TCGA-FD-A3SS-01 15 88472333 88472333 G C NTRK3 Intron 0.40 TCGA-FD-A3SS-01 15 91182020 91182020 G A CRTC3 Missense_Mutation p.M507I 0.05 tolerated(0.28) benign(0.001) TCGA-FD-A3SS-01 15 91809817 91809817 C G SV2B Silent p.S338S 0.25 TCGA-FD-A3SS-01 15 97326864 97326864 C A SPATA8 5'UTR 0.13 TCGA-FD-A3SS-01 16 14989478 14989478 G C NOMO1 Missense_Mutation p.K1215N 0.14 deleterious(0) unknown(0) TCGA-FD-A3SS-01 16 16180768 16180768 C T ABCC1 Missense_Mutation p.P794S 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 16 1618267 1618267 G A IFT140 Missense_Mutation p.S574F 0.28 deleterious(0) probably_damaging(0.984) TCGA-FD-A3SS-01 16 21078642 21078642 C T DNAH3 Silent p.L1160L 0.20 TCGA-FD-A3SS-01 16 24231400 24231400 C G PRKCB 3'UTR 0.28 TCGA-FD-A3SS-01 16 270656 270656 C G LUC7L Missense_Mutation p.E83Q 0.38 deleterious(0.01) possibly_damaging(0.775) TCGA-FD-A3SS-01 16 2817596 2817596 G A SRRM2 Missense_Mutation p.R2356K 0.10 probably_damaging(0.977) TCGA-FD-A3SS-01 16 30123483 30123483 C A GDPD3 Missense_Mutation p.K181N 0.11 tolerated(0.54) benign(0.042) TCGA-FD-A3SS-01 16 30123690 30123690 C A GDPD3 Missense_Mutation p.Q140H 0.10 deleterious(0.05) probably_damaging(0.958) TCGA-FD-A3SS-01 16 30123730 30123730 C A GDPD3 Missense_Mutation p.G127V 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 16 30128229 30128229 C T MAPK3 Missense_Mutation p.D335N 0.10 deleterious(0.05) possibly_damaging(0.87) TCGA-FD-A3SS-01 16 3640791 3640791 C G SLX4 Missense_Mutation p.E950Q 0.19 tolerated(0.34) benign(0.28) TCGA-FD-A3SS-01 16 4797521 4797521 G A C16orf71 Silent p.Q486Q 0.25 TCGA-FD-A3SS-01 16 4934149 4934149 C T PPL Missense_Mutation p.E1503K 0.06 deleterious(0.02) possibly_damaging(0.588) TCGA-FD-A3SS-01 16 53639396 53639396 C T RPGRIP1L Missense_Mutation p.D1278N 0.05 tolerated(0.15) benign(0.011) TCGA-FD-A3SS-01 16 66998585 66998585 C T CES3 Silent p.I258I 0.57 TCGA-FD-A3SS-01 16 67404900 67404900 G C LRRC36 Missense_Mutation p.E417Q 0.07 tolerated_low_confidence(0.07) probably_damaging(0.92) TCGA-FD-A3SS-01 16 69964146 69964146 C T WWP2 Missense_Mutation p.P477L 0.74 tolerated(0.31) probably_damaging(0.998) TCGA-FD-A3SS-01 16 70011760 70011760 C G PDXDC2P RNA 0.30 TCGA-FD-A3SS-01 16 70548332 70548332 C G COG4 Missense_Mutation p.L150F 0.08 deleterious(0.01) possibly_damaging(0.881) TCGA-FD-A3SS-01 16 71799484 71799484 C G AP1G1 Missense_Mutation p.V219L 0.28 deleterious(0) benign(0.061) TCGA-FD-A3SS-01 16 783368 783368 C A NARFL Silent p.L251L 0.07 TCGA-FD-A3SS-01 16 84199455 84199455 G A DNAAF1 Silent p.E310E 0.09 TCGA-FD-A3SS-01 16 89800365 89800365 C T ZNF276 Missense_Mutation p.R465W 0.39 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 16 89800436 89800436 C T ZNF276 Silent p.L488L 0.34 TCGA-FD-A3SS-01 16 90016035 90016035 G A DEF8 Silent p.T54T 0.17 TCGA-FD-A3SS-01 17 15406428 15406428 G A TVP23C Missense_Mutation p.S194L 0.13 deleterious(0.05) benign(0.134) TCGA-FD-A3SS-01 17 15532172 15532172 C T TRIM16 Silent p.E484E 0.20 TCGA-FD-A3SS-01 17 18188586 18188586 C T TOP3A Missense_Mutation p.D583N 0.22 tolerated(0.55) benign(0.002) TCGA-FD-A3SS-01 17 27047838 27047838 C T RPL23A Missense_Mutation p.R47W 0.26 tolerated(0.28) benign(0.008) TCGA-FD-A3SS-01 17 28747979 28747979 C T CPD Missense_Mutation p.S372F 0.07 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SS-01 17 28749808 28749808 C G CPD Nonsense_Mutation p.S475* 0.06 TCGA-FD-A3SS-01 17 29184080 29184080 G A ATAD5 Missense_Mutation p.E915K 0.30 deleterious(0) benign(0.13) TCGA-FD-A3SS-01 17 30525994 30525994 G A RHOT1 Missense_Mutation p.E300K 0.23 deleterious(0) probably_damaging(0.975) TCGA-FD-A3SS-01 17 34251717 34251717 C T RDM1 Silent p.P153P 0.27 TCGA-FD-A3SS-01 17 34964210 34964210 C T MRM1 Silent p.L247L 0.15 TCGA-FD-A3SS-01 17 35614676 35614676 G C ACACA Missense_Mutation p.S592C 0.14 deleterious(0) probably_damaging(0.997) TCGA-FD-A3SS-01 17 3628001 3628001 G C GSG2 Missense_Mutation p.E258Q 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-FD-A3SS-01 17 38027018 38027018 G T ZPBP2 Nonsense_Mutation p.E64* 0.08 TCGA-FD-A3SS-01 17 38027764 38027764 G C ZPBP2 Missense_Mutation p.D98H 0.11 tolerated(0.1) probably_damaging(0.989) TCGA-FD-A3SS-01 17 40028327 40028327 C T ACLY Silent p.G917G 0.09 TCGA-FD-A3SS-01 17 40039486 40039486 C A ACLY Splice_Site p.X719_splice 0.39 TCGA-FD-A3SS-01 17 43515225 43515225 C T PLEKHM1 Silent p.%3D 0.10 TCGA-FD-A3SS-01 17 4455916 4455916 C T MYBBP1A Silent p.S189S 0.20 TCGA-FD-A3SS-01 17 45229303 45229303 C G CDC27 Splice_Site p.X320_splice 0.40 TCGA-FD-A3SS-01 17 45897373 45897373 G A OSBPL7 Silent p.L55L 0.10 TCGA-FD-A3SS-01 17 45897592 45897592 G C OSBPL7 Nonsense_Mutation p.S18* 0.14 TCGA-FD-A3SS-01 17 48735563 48735563 G A ABCC3 Missense_Mutation p.D203N 0.17 tolerated(0.16) benign(0.052) TCGA-FD-A3SS-01 17 54991173 54991173 C T TRIM25 Silent p.A59A 0.30 TCGA-FD-A3SS-01 17 56405156 56405156 G A BZRAP1 Silent p.I42I 0.12 TCGA-FD-A3SS-01 17 59949655 59949655 C T INTS2 Missense_Mutation p.E925K 0.32 deleterious(0) benign(0.258) TCGA-FD-A3SS-01 17 62018968 62018968 C T SCN4A Silent p.E1558E 0.32 TCGA-FD-A3SS-01 17 65052309 65052309 C T CACNG1 Silent p.L197L 0.14 TCGA-FD-A3SS-01 17 67519652 67519652 C T MAP2K6 Intron 0.34 TCGA-FD-A3SS-01 17 67519677 67519677 C T MAP2K6 Silent p.L186L 0.37 TCGA-FD-A3SS-01 17 6927018 6927018 G C BCL6B Missense_Mutation p.A10P 0.38 deleterious(0.01) benign(0.016) TCGA-FD-A3SS-01 17 72297244 72297244 C T DNAI2 Silent p.I308I 0.43 TCGA-FD-A3SS-01 17 73571117 73571117 G A LLGL2 3'UTR 0.20 TCGA-FD-A3SS-01 17 73945836 73945836 C T ACOX1 Missense_Mutation p.E481K 0.11 tolerated(0.55) benign(0.001) TCGA-FD-A3SS-01 17 7557505 7557505 C G ATP1B2 Missense_Mutation p.S161C 0.17 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SS-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.75 tolerated(0.11) benign(0.308) TCGA-FD-A3SS-01 17 77755666 77755666 G T CBX2 Intron 0.11 TCGA-FD-A3SS-01 17 8222159 8222159 C T ARHGEF15 Missense_Mutation p.S655L 0.10 tolerated(0.2) benign(0.077) TCGA-FD-A3SS-01 17 8424198 8424198 C G MYH10 Missense_Mutation p.Q757H 0.10 possibly_damaging(0.739) TCGA-FD-A3SS-01 18 11876640 11876640 G A GNAL Missense_Mutation p.D395N 0.07 deleterious(0.03) possibly_damaging(0.85) TCGA-FD-A3SS-01 18 19762943 19762943 C G GATA6 Missense_Mutation p.S520C 0.60 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A3SS-01 18 21121061 21121061 G C NPC1 Missense_Mutation p.L829V 0.09 tolerated(0.1) benign(0.021) TCGA-FD-A3SS-01 18 21123451 21123451 G A NPC1 Missense_Mutation p.S738L 0.07 deleterious(0) benign(0.371) TCGA-FD-A3SS-01 18 28710384 28710384 A G DSC1 3'UTR 0.35 TCGA-FD-A3SS-01 18 2945834 2945834 C T LPIN2 Intron 0.58 TCGA-FD-A3SS-01 18 31323636 31323636 C T ASXL3 Missense_Mutation p.S1275F 0.06 possibly_damaging(0.871) TCGA-FD-A3SS-01 18 34408787 34408787 C T TPGS2 5'UTR 0.44 TCGA-FD-A3SS-01 18 47500910 47500910 G A MYO5B Missense_Mutation p.H378Y 0.54 deleterious(0.01) possibly_damaging(0.868) TCGA-FD-A3SS-01 18 51898905 51898905 C T C18orf54 Nonsense_Mutation p.Q305* 0.28 TCGA-FD-A3SS-01 18 66564576 66564576 G A CCDC102B Missense_Mutation p.E392K 0.12 tolerated(0.05) benign(0.409) TCGA-FD-A3SS-01 18 72186206 72186206 G C CNDP2 Missense_Mutation p.L411F 0.53 tolerated(0.28) benign(0.032) TCGA-FD-A3SS-01 19 10823957 10823957 G A QTRT1 3'UTR 0.62 TCGA-FD-A3SS-01 19 12502718 12502718 C G ZNF799 Missense_Mutation p.G165A 0.06 deleterious(0.04) possibly_damaging(0.868) TCGA-FD-A3SS-01 19 14273687 14273687 G T LPHN1 Nonsense_Mutation p.S314* 0.14 TCGA-FD-A3SS-01 19 14591576 14591576 G A GIPC1 Silent p.T101T 0.13 TCGA-FD-A3SS-01 19 15508649 15508649 G A AKAP8L Missense_Mutation p.S392F 0.54 deleterious(0) probably_damaging(0.99) TCGA-FD-A3SS-01 19 19168416 19168416 G C ARMC6 Missense_Mutation p.Q495H 0.14 deleterious(0.01) possibly_damaging(0.687) TCGA-FD-A3SS-01 19 1969891 1969891 G A CSNK1G2 Silent p.L40L 0.71 TCGA-FD-A3SS-01 19 19745863 19745863 C T GMIP Missense_Mutation p.E574K 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 19 22156691 22156691 G C ZNF208 Nonsense_Mutation p.S382* 0.16 TCGA-FD-A3SS-01 19 3186161 3186161 G C NCLN Missense_Mutation p.E45Q 0.47 deleterious(0) possibly_damaging(0.895) TCGA-FD-A3SS-01 19 33334854 33334854 G A SLC7A9 Silent p.L327L 0.12 TCGA-FD-A3SS-01 19 37310550 37310550 C - ZNF790 Frame_Shift_Del p.K233Sfs*121 0.20 TCGA-FD-A3SS-01 19 37676275 37676275 C T ZNF585B Missense_Mutation p.E722K 0.12 tolerated(0.07) possibly_damaging(0.702) TCGA-FD-A3SS-01 19 37967381 37967381 C T ZNF570 Intron 0.25 TCGA-FD-A3SS-01 19 39306959 39306959 C T ECH1 Missense_Mutation p.M232I 0.12 tolerated(0.09) possibly_damaging(0.696) TCGA-FD-A3SS-01 19 40739426 40739426 C A AKT2 3'UTR 0.27 TCGA-FD-A3SS-01 19 40739427 40739427 C G AKT2 3'UTR 0.27 TCGA-FD-A3SS-01 19 40739600 40739600 G T AKT2 3'UTR 0.58 TCGA-FD-A3SS-01 19 40739603 40739603 G A AKT2 3'UTR 0.62 TCGA-FD-A3SS-01 19 40886303 40886303 G A HIPK4 Missense_Mutation p.S532F 0.09 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FD-A3SS-01 19 42753748 42753748 G A ERF Silent p.L172L 0.06 TCGA-FD-A3SS-01 19 42753761 42753761 G T ERF Missense_Mutation p.S168Y 0.06 deleterious(0) benign(0.005) TCGA-FD-A3SS-01 19 43382132 43382132 G A PSG1 Silent p.T121T 0.21 TCGA-FD-A3SS-01 19 43430591 43430591 G A PSG7 Silent p.L329L 0.03 TCGA-FD-A3SS-01 19 43430668 43430668 C T PSG7 Missense_Mutation p.E304K 0.14 deleterious(0.05) possibly_damaging(0.709) TCGA-FD-A3SS-01 19 43439684 43439684 A G PSG7 Missense_Mutation p.V101A 0.05 deleterious(0.03) benign(0.011) TCGA-FD-A3SS-01 19 44514752 44514752 G C ZNF230 Missense_Mutation p.Q187H 0.29 deleterious(0.03) probably_damaging(0.964) TCGA-FD-A3SS-01 19 44516449 44516449 G A ZNF230 3'UTR 0.17 TCGA-FD-A3SS-01 19 47569810 47569810 C T ZC3H4 Missense_Mutation p.E1239K 0.36 unknown(0) TCGA-FD-A3SS-01 19 48389521 48389521 G A SULT2A1 5'UTR 0.17 TCGA-FD-A3SS-01 19 49867963 49867963 C G DKKL1 Silent p.L45L 0.06 TCGA-FD-A3SS-01 19 50138819 50138819 C G RRAS 3'UTR 0.35 TCGA-FD-A3SS-01 19 50138855 50138855 C T RRAS Missense_Mutation p.G212D 0.41 deleterious(0.05) benign(0.164) TCGA-FD-A3SS-01 19 50864260 50864260 C T NAPSA Silent p.P202P 0.34 TCGA-FD-A3SS-01 19 51219704 51219704 A G SHANK1 Missense_Mutation p.I96T 0.32 possibly_damaging(0.696) TCGA-FD-A3SS-01 19 51586008 51586008 G A KLK14 5'UTR 0.32 TCGA-FD-A3SS-01 19 51890572 51890572 C T LIM2 Silent p.L42L 0.21 TCGA-FD-A3SS-01 19 54139969 54139969 G C DPRX Silent p.L101L 0.32 TCGA-FD-A3SS-01 19 54139992 54139992 G C DPRX Missense_Mutation p.R109T 0.34 tolerated(0.71) possibly_damaging(0.725) TCGA-FD-A3SS-01 19 54140199 54140199 C G DPRX Missense_Mutation p.S178C 0.05 tolerated(0.08) benign(0.174) TCGA-FD-A3SS-01 19 54545425 54545425 C G VSTM1 Missense_Mutation p.K171N 0.17 deleterious(0.01) possibly_damaging(0.831) TCGA-FD-A3SS-01 19 54721190 54721190 C T LILRB3 Missense_Mutation p.E584K 0.30 tolerated(0.06) benign(0.025) TCGA-FD-A3SS-01 19 55147223 55147223 C T AC009892.10 3'UTR 0.21 TCGA-FD-A3SS-01 19 58370965 58370965 C T ZNF587 Silent p.L395L 0.44 TCGA-FD-A3SS-01 19 59063424 59063424 C T CHMP2A Silent p.E159E 0.05 TCGA-FD-A3SS-01 19 59063429 59063429 C T CHMP2A Missense_Mutation p.E158K 0.06 deleterious(0.01) probably_damaging(0.955) TCGA-FD-A3SS-01 1 101704981 101704981 G A S1PR1 Silent p.L147L 0.45 TCGA-FD-A3SS-01 1 10335485 10335485 G C KIF1B Splice_Site p.X289_splice 0.14 TCGA-FD-A3SS-01 1 109339276 109339276 G A STXBP3 Silent p.Q428Q 0.08 TCGA-FD-A3SS-01 1 109359687 109359687 C T AKNAD1 Missense_Mutation p.E788K 0.32 tolerated(0.36) benign(0.011) TCGA-FD-A3SS-01 1 110280351 110280351 A T GSTM3 Nonsense_Mutation p.L132* 0.33 TCGA-FD-A3SS-01 1 111862083 111862083 G A CHIA Silent p.Q390Q 0.45 TCGA-FD-A3SS-01 1 1140965 1140965 C A TNFRSF18 Intron 0.27 TCGA-FD-A3SS-01 1 144879302 144879302 G A PDE4DIP Missense_Mutation p.S1383L 0.20 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 1 145296564 145296564 C G NBPF10 Silent p.L162L 0.05 TCGA-FD-A3SS-01 1 149859417 149859417 G C HIST2H2AB Missense_Mutation p.S17W 0.16 deleterious_low_confidence(0) unknown(0) TCGA-FD-A3SS-01 1 151262298 151262298 G A ZNF687 Missense_Mutation p.E927K 0.38 tolerated(0.14) probably_damaging(0.971) TCGA-FD-A3SS-01 1 153748380 153748380 G A SLC27A3 Missense_Mutation p.G183E 0.24 tolerated_low_confidence(0.14) probably_damaging(0.972) TCGA-FD-A3SS-01 1 153923847 153923847 G T CRTC2 Silent p.P431P 0.23 TCGA-FD-A3SS-01 1 154898934 154898934 G A PMVK Missense_Mutation p.S113F 0.46 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SS-01 1 157103862 157103862 C T ETV3 Intron 0.41 TCGA-FD-A3SS-01 1 158450384 158450384 C T OR10R2 Silent p.L239L 0.10 TCGA-FD-A3SS-01 1 159035839 159035839 C T AIM2 Missense_Mutation p.R226H 0.36 tolerated(0.54) possibly_damaging(0.462) TCGA-FD-A3SS-01 1 160318836 160318836 G A NCSTN Missense_Mutation p.E80K 0.23 deleterious(0.03) benign(0.059) TCGA-FD-A3SS-01 1 160319451 160319451 G A NCSTN Missense_Mutation p.D143N 0.42 deleterious(0) benign(0.097) TCGA-FD-A3SS-01 1 161726695 161726695 G T DUSP12 Missense_Mutation p.M327I 0.16 tolerated(1) benign(0.001) TCGA-FD-A3SS-01 1 165648806 165648806 G T ALDH9A1 Nonsense_Mutation p.S268* 0.14 TCGA-FD-A3SS-01 1 166810266 166810266 G A POGK Missense_Mutation p.E25K 0.33 deleterious_low_confidence(0.02) benign(0) TCGA-FD-A3SS-01 1 170959046 170959046 T C MROH9 Silent p.C310C 0.37 TCGA-FD-A3SS-01 1 170965666 170965666 G C MROH9 Silent p.L452L 0.15 TCGA-FD-A3SS-01 1 173703360 173703360 G A KLHL20 Missense_Mutation p.D178N 0.07 deleterious(0) probably_damaging(0.968) TCGA-FD-A3SS-01 1 176681100 176681100 G A PAPPA2 Missense_Mutation p.D1261N 0.07 tolerated(0.54) benign(0.001) TCGA-FD-A3SS-01 1 17681136 17681136 G A PADI4 Missense_Mutation p.E422K 0.51 tolerated(0.12) benign(0.015) TCGA-FD-A3SS-01 1 179887135 179887135 G C TOR1AIP1 Missense_Mutation p.D505H 0.05 deleterious(0.01) probably_damaging(1) TCGA-FD-A3SS-01 1 183616842 183616842 C T APOBEC4 Missense_Mutation p.E359K 0.11 tolerated(0.17) benign(0.007) TCGA-FD-A3SS-01 1 184006246 184006246 C A COLGALT2 Missense_Mutation p.K82N 0.22 deleterious(0) possibly_damaging(0.836) TCGA-FD-A3SS-01 1 186082010 186082010 G A HMCN1 Missense_Mutation p.D3686N 0.22 possibly_damaging(0.789) TCGA-FD-A3SS-01 1 202097339 202097339 C T GPR37L1 Silent p.V367V 0.07 TCGA-FD-A3SS-01 1 20249137 20249137 G C PLA2G2E Missense_Mutation p.S51C 0.12 deleterious(0.01) probably_damaging(0.963) TCGA-FD-A3SS-01 1 202700976 202700976 C T KDM5B Missense_Mutation p.R1334Q 0.08 tolerated(1) benign(0.001) TCGA-FD-A3SS-01 1 202703015 202703015 C G KDM5B Splice_Site p.X1142_splice 0.12 TCGA-FD-A3SS-01 1 205070807 205070807 G C RBBP5 Missense_Mutation p.L185V 0.31 tolerated(0.44) benign(0.003) TCGA-FD-A3SS-01 1 207314612 207314612 C T C4BPA Nonsense_Mutation p.Q479* 0.18 TCGA-FD-A3SS-01 1 220208271 220208271 C T EPRS Silent p.L72L 0.39 TCGA-FD-A3SS-01 1 22178416 22178416 G A HSPG2 Missense_Mutation p.R2292C 0.33 probably_damaging(0.959) TCGA-FD-A3SS-01 1 231004195 231004195 G C C1orf198 Missense_Mutation p.L22V 0.33 deleterious(0.05) probably_damaging(0.996) TCGA-FD-A3SS-01 1 235294882 235294882 G A RBM34 3'UTR 0.38 TCGA-FD-A3SS-01 1 235892949 235892949 C T LYST Missense_Mutation p.R3018Q 0.06 tolerated(0.14) probably_damaging(0.984) TCGA-FD-A3SS-01 1 241951319 241951319 G A WDR64 Silent p.L948L 0.31 TCGA-FD-A3SS-01 1 245019785 245019785 G C HNRNPU Missense_Mutation p.P629R 0.12 deleterious(0) unknown(0) TCGA-FD-A3SS-01 1 246810440 246810440 G A CNST Splice_Site p.X313_splice 0.17 TCGA-FD-A3SS-01 1 248487813 248487813 G C OR2M7 Missense_Mutation p.H20D 0.04 tolerated(0.1) benign(0.062) TCGA-FD-A3SS-01 1 26317351 26317351 C G PAFAH2 5'UTR 0.13 TCGA-FD-A3SS-01 1 28477482 28477482 G T PTAFR Silent p.L17L 0.14 TCGA-FD-A3SS-01 1 35331860 35331860 G A DLGAP3 Missense_Mutation p.R922W 0.27 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SS-01 1 35370306 35370306 G A DLGAP3 Missense_Mutation p.H227Y 0.07 tolerated(0.45) possibly_damaging(0.775) TCGA-FD-A3SS-01 1 36056363 36056363 C A TFAP2E Missense_Mutation p.L345M 0.14 deleterious(0) probably_damaging(0.994) TCGA-FD-A3SS-01 1 3672032 3672032 G A CCDC27 Missense_Mutation p.E152K 0.33 tolerated(0.75) benign(0.039) TCGA-FD-A3SS-01 1 39893741 39893741 G A MACF1 Missense_Mutation p.E3467K 0.07 possibly_damaging(0.64) TCGA-FD-A3SS-01 1 42049173 42049173 C T HIVEP3 Silent p.L432L 0.31 TCGA-FD-A3SS-01 1 43805111 43805111 G A MPL Silent p.L187L 0.35 TCGA-FD-A3SS-01 1 45271270 45271270 C T PLK3 Missense_Mutation p.R621W 0.04 deleterious(0.02) possibly_damaging(0.72) TCGA-FD-A3SS-01 1 46082055 46082055 C - NASP Frame_Shift_Del p.S690* 0.30 TCGA-FD-A3SS-01 1 46182672 46182672 C T IPP Missense_Mutation p.E402K 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A3SS-01 1 47406995 47406995 G A CYP4A11 Silent p.L37L 0.05 TCGA-FD-A3SS-01 1 47904552 47904552 G A FOXD2 Missense_Mutation p.A249T 0.61 deleterious_low_confidence(0.04) unknown(0) TCGA-FD-A3SS-01 1 53755276 53755276 C T LRP8 Silent p.E110E 0.26 TCGA-FD-A3SS-01 1 54606823 54606823 G C CDCP2 Missense_Mutation p.F237L 0.12 tolerated(0.07) possibly_damaging(0.593) TCGA-FD-A3SS-01 1 57489208 57489208 G A DAB1 Silent p.P297P 0.35 TCGA-FD-A3SS-01 1 60505607 60505607 C A C1orf87 Missense_Mutation p.K243N 0.14 tolerated(0.13) benign(0.073) TCGA-FD-A3SS-01 1 6181225 6181225 G A CHD5 Nonsense_Mutation p.R1618* 0.30 TCGA-FD-A3SS-01 1 62237176 62237176 C T INADL Nonsense_Mutation p.Q200* 0.07 TCGA-FD-A3SS-01 1 6291999 6291999 G A ICMT Missense_Mutation p.S212F 0.34 deleterious(0) probably_damaging(0.979) TCGA-FD-A3SS-01 1 67266883 67266883 G C INSL5 Missense_Mutation p.L8V 0.11 deleterious(0.04) benign(0.116) TCGA-FD-A3SS-01 1 71418609 71418609 G A PTGER3 Missense_Mutation p.S413L 0.04 tolerated_low_confidence(1) benign(0) TCGA-FD-A3SS-01 1 75097549 75097549 G C C1orf173 Missense_Mutation p.Q223E 0.44 deleterious(0.01) possibly_damaging(0.596) TCGA-FD-A3SS-01 1 78180315 78180315 A - USP33 Frame_Shift_Del p.L765Ffs*20 0.26 TCGA-FD-A3SS-01 1 8585837 8585837 C A RERE Intron 0.73 TCGA-FD-A3SS-01 1 87045216 87045216 G A CLCA4 Missense_Mutation p.D768N 0.04 tolerated(0.24) benign(0.008) TCGA-FD-A3SS-01 1 87102530 87102530 G C RP4-651E10.4 Intron 0.04 TCGA-FD-A3SS-01 1 878746 878746 G C SAMD11 Missense_Mutation p.E560Q 0.22 deleterious(0) probably_damaging(0.985) TCGA-FD-A3SS-01 1 92528691 92528691 G A EPHX4 Missense_Mutation p.E313K 0.39 tolerated(0.12) possibly_damaging(0.6) TCGA-FD-A3SS-01 1 92799022 92799022 G C RPAP2 Missense_Mutation p.L510F 0.08 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 1 93170221 93170221 G A EVI5 Missense_Mutation p.S121L 0.07 deleterious(0.01) possibly_damaging(0.724) TCGA-FD-A3SS-01 1 970701 970701 G A AGRN Missense_Mutation p.D170N 0.16 tolerated(0.06) possibly_damaging(0.539) TCGA-FD-A3SS-01 1 99161250 99161250 G C SNX7 Missense_Mutation p.Q272H 0.06 tolerated(0.18) benign(0.036) TCGA-FD-A3SS-01 20 10279959 10279959 G C SNAP25 Missense_Mutation p.E151Q 0.23 tolerated(0.68) possibly_damaging(0.702) TCGA-FD-A3SS-01 20 13514765 13514765 G A TASP1 Silent p.D233D 0.23 TCGA-FD-A3SS-01 20 13695543 13695543 C T ESF1 Missense_Mutation p.R845K 0.06 deleterious(0.01) probably_damaging(0.97) TCGA-FD-A3SS-01 20 18297183 18297183 C G ZNF133 Nonsense_Mutation p.S562* 0.30 TCGA-FD-A3SS-01 20 30409372 30409372 G A MYLK2 Missense_Mutation p.E202K 0.29 tolerated(0.66) benign(0.05) TCGA-FD-A3SS-01 20 30897570 30897570 C T KIF3B 5'UTR 0.28 TCGA-FD-A3SS-01 20 33764636 33764636 G A PROCR 3'UTR 0.10 TCGA-FD-A3SS-01 20 36793594 36793594 C T TGM2 Missense_Mutation p.E3K 0.43 tolerated(0.38) benign(0.002) TCGA-FD-A3SS-01 20 3838392 3838392 G A MAVS Silent p.L76L 0.10 TCGA-FD-A3SS-01 20 3838402 3838402 G A MAVS Missense_Mutation p.E80K 0.10 deleterious(0.02) possibly_damaging(0.539) TCGA-FD-A3SS-01 20 3842053 3842053 G A MAVS Missense_Mutation p.A123T 0.10 deleterious(0.04) benign(0.219) TCGA-FD-A3SS-01 20 3842137 3842137 G C MAVS Missense_Mutation p.E151Q 0.08 tolerated(0.12) benign(0.003) TCGA-FD-A3SS-01 20 3869936 3869936 G A PANK2 Silent p.P63P 0.38 TCGA-FD-A3SS-01 20 42144735 42144735 G C L3MBTL1 Missense_Mutation p.E238D 0.15 tolerated(0.1) benign(0.297) TCGA-FD-A3SS-01 20 45354112 45354112 G A SLC2A10 Missense_Mutation p.G146D 0.17 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 20 49575532 49575532 G A MOCS3 Silent p.P51P 0.05 TCGA-FD-A3SS-01 20 49576560 49576560 G A MOCS3 Nonsense_Mutation p.W394* 0.40 TCGA-FD-A3SS-01 20 5904318 5904318 C T CHGB Missense_Mutation p.H510Y 0.05 tolerated(1) benign(0.022) TCGA-FD-A3SS-01 20 61040029 61040029 C A GATA5 Missense_Mutation p.D353Y 0.38 deleterious(0) possibly_damaging(0.786) TCGA-FD-A3SS-01 20 62194088 62194088 G A HELZ2 Silent p.L2029L 0.45 TCGA-FD-A3SS-01 20 9459591 9459591 G A PLCB4 Missense_Mutation p.E1174K 0.15 deleterious_low_confidence(0.02) benign(0.156) TCGA-FD-A3SS-01 21 27101968 27101968 C A ATP5J Missense_Mutation p.K54N 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-FD-A3SS-01 21 30365082 30365082 C G LTN1 Intron 0.14 TCGA-FD-A3SS-01 21 33069036 33069036 C T SCAF4 Missense_Mutation p.D269N 0.15 probably_damaging(0.999) TCGA-FD-A3SS-01 21 34134491 34134491 C T PAXBP1 Missense_Mutation p.D263N 0.07 deleterious(0) probably_damaging(0.959) TCGA-FD-A3SS-01 21 42762521 42762521 G A MX2 Silent p.Q254Q 0.25 TCGA-FD-A3SS-01 21 45548430 45548430 C T PWP2 Intron 0.64 TCGA-FD-A3SS-01 22 19470241 19470241 G C CDC45 Missense_Mutation p.G78A 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A3SS-01 22 20723725 20723725 C T USP41 Silent p.K207K 0.13 TCGA-FD-A3SS-01 22 20920999 20920999 G C MED15 Missense_Mutation p.Q312H 0.06 deleterious_low_confidence(0.04) unknown(0) TCGA-FD-A3SS-01 22 22930867 22930867 C T IGLV2-33 Missense_Mutation p.S21F 0.20 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FD-A3SS-01 22 22930878 22930878 C T IGLV2-33 Nonsense_Mutation p.Q25* 0.20 TCGA-FD-A3SS-01 22 24129277 24129277 C T SMARCB1 5'UTR 0.53 TCGA-FD-A3SS-01 22 24129380 24129380 G C SMARCB1 Missense_Mutation p.K8N 0.19 deleterious(0.01) possibly_damaging(0.694) TCGA-FD-A3SS-01 22 24622208 24622208 C T GGT5 Silent p.E355E 0.15 TCGA-FD-A3SS-01 22 30735229 30735229 C G SF3A1 Missense_Mutation p.E463Q 0.07 deleterious(0.02) probably_damaging(0.988) TCGA-FD-A3SS-01 22 31796663 31796663 C T DRG1 Missense_Mutation p.R34C 0.40 deleterious(0.03) benign(0.008) TCGA-FD-A3SS-01 22 36661254 36661254 G A APOL1 Missense_Mutation p.M140I 0.24 tolerated(0.25) benign(0.229) TCGA-FD-A3SS-01 22 36696992 36696992 C T MYH9 Missense_Mutation p.E915K 0.40 possibly_damaging(0.562) TCGA-FD-A3SS-01 22 38916075 38916075 C T DMC1 Missense_Mutation p.E325K 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A3SS-01 22 40139834 40139834 C T ENTHD1 Silent p.A558A 0.10 TCGA-FD-A3SS-01 22 46930167 46930167 C A CELSR1 Missense_Mutation p.W967C 0.50 deleterious(0.01) possibly_damaging(0.886) TCGA-FD-A3SS-01 2 100210735 100210735 G A AFF3 Missense_Mutation p.S488F 0.13 deleterious(0) probably_damaging(0.988) TCGA-FD-A3SS-01 2 10045054 10045054 C T TAF1B Missense_Mutation p.R292C 0.05 tolerated(0.1) possibly_damaging(0.64) TCGA-FD-A3SS-01 2 109513512 109513512 G A EDAR Missense_Mutation p.R400C 0.37 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 2 110332202 110332202 G C SEPT10 Missense_Mutation p.L186V 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A3SS-01 2 112858208 112858208 C T TMEM87B Silent p.F462F 0.09 TCGA-FD-A3SS-01 2 114257298 114257298 C T FOXD4L1 Silent p.I155I 0.04 TCGA-FD-A3SS-01 2 119600601 119600601 G C EN1 Missense_Mutation p.I364M 0.13 tolerated(0.11) benign(0.034) TCGA-FD-A3SS-01 2 122122825 122122825 G A CLASP1 Silent p.L1308L 0.12 TCGA-FD-A3SS-01 2 130843513 130843513 C G POTEF Missense_Mutation p.G551A 0.60 tolerated_low_confidence(0.31) benign(0.064) TCGA-FD-A3SS-01 2 139428457 139428457 C G NXPH2 3'UTR 0.21 TCGA-FD-A3SS-01 2 141533803 141533803 C T LRP1B Silent p.K1788K 0.19 TCGA-FD-A3SS-01 2 159537267 159537267 G C PKP4 3'UTR 0.43 TCGA-FD-A3SS-01 2 160050867 160050867 G C TANC1 Missense_Mutation p.E948Q 0.08 tolerated(0.62) possibly_damaging(0.529) TCGA-FD-A3SS-01 2 160609027 160609027 G C MARCH7 Missense_Mutation p.L576F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 2 16082542 16082542 G T MYCN Missense_Mutation p.G119V 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 2 169939910 169939910 G A DHRS9 Missense_Mutation p.D129N 0.11 deleterious(0.02) possibly_damaging(0.827) TCGA-FD-A3SS-01 2 170366331 170366331 C T KLHL41 Nonsense_Mutation p.Q15* 0.31 TCGA-FD-A3SS-01 2 171678617 171678617 G A GAD1 Missense_Mutation p.V35M 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.483) TCGA-FD-A3SS-01 2 178301571 178301571 C T AGPS Missense_Mutation p.S174L 0.06 tolerated(0.11) benign(0.003) TCGA-FD-A3SS-01 2 179368594 179368594 C T PLEKHA3 Missense_Mutation p.L295F 0.12 tolerated_low_confidence(0.06) benign(0.003) TCGA-FD-A3SS-01 2 179421813 179421813 C A TTN Missense_Mutation p.W29356C 0.48 TCGA-FD-A3SS-01 2 179641476 179641476 G C TTN Missense_Mutation p.F1705L 0.12 TCGA-FD-A3SS-01 2 185803228 185803228 G A ZNF804A Silent p.L1035L 0.37 TCGA-FD-A3SS-01 2 1906969 1906969 C G MYT1L Missense_Mutation p.E637Q 0.09 deleterious(0.01) possibly_damaging(0.777) TCGA-FD-A3SS-01 2 192275892 192275892 C T MYO1B Missense_Mutation p.P956L 0.18 deleterious(0.03) probably_damaging(1) TCGA-FD-A3SS-01 2 1926917 1926917 G A MYT1L Silent p.L208L 0.26 TCGA-FD-A3SS-01 2 197654765 197654765 G A GTF3C3 Silent p.L189L 0.16 TCGA-FD-A3SS-01 2 198299734 198299734 C T SF3B1 5'UTR 0.26 TCGA-FD-A3SS-01 2 201845846 201845846 G C FAM126B 3'UTR 0.12 TCGA-FD-A3SS-01 2 21233505 21233505 C T APOB Missense_Mutation p.E2079K 0.21 benign(0.018) TCGA-FD-A3SS-01 2 216177099 216177099 G A ATIC Intron 0.11 TCGA-FD-A3SS-01 2 216271124 216271124 C T FN1 Silent p.V941V 0.19 TCGA-FD-A3SS-01 2 216272903 216272903 C T FN1 Missense_Mutation p.D816N 0.06 tolerated(0.32) benign(0.008) TCGA-FD-A3SS-01 2 228881142 228881142 C T SPHKAP Silent p.V1476V 0.17 TCGA-FD-A3SS-01 2 231327168 231327168 C G SP100 Missense_Mutation p.S331C 0.49 deleterious(0) possibly_damaging(0.843) TCGA-FD-A3SS-01 2 241826450 241826450 G C C2orf54 3'UTR 0.54 TCGA-FD-A3SS-01 2 24483991 24483991 G A ITSN2 Missense_Mutation p.S889L 0.27 deleterious(0.05) benign(0.184) TCGA-FD-A3SS-01 2 24896249 24896249 G A NCOA1 Missense_Mutation p.D91N 0.19 tolerated(0.1) benign(0.351) TCGA-FD-A3SS-01 2 24896300 24896300 G C NCOA1 Missense_Mutation p.E108Q 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A3SS-01 2 26029159 26029159 G A ASXL2 Missense_Mutation p.S64F 0.10 deleterious(0) probably_damaging(0.986) TCGA-FD-A3SS-01 2 32264363 32264363 G C DPY30 Silent p.L23L 0.13 TCGA-FD-A3SS-01 2 36994259 36994259 G A VIT Silent p.Q170Q 0.21 TCGA-FD-A3SS-01 2 39212844 39212844 G T SOS1 3'UTR 0.10 TCGA-FD-A3SS-01 2 69045056 69045056 C T ARHGAP25 Silent p.D311D 0.42 TCGA-FD-A3SS-01 2 69172467 69172467 C G GKN2 3'UTR 0.04 TCGA-FD-A3SS-01 2 75280808 75280808 C T TACR1 Missense_Mutation p.G220E 0.14 deleterious(0) probably_damaging(0.985) TCGA-FD-A3SS-01 2 80529917 80529917 G A LRRTM1 Missense_Mutation p.A343V 0.35 deleterious(0.03) benign(0.081) TCGA-FD-A3SS-01 2 85554310 85554310 G A TGOLN2 Missense_Mutation p.S182L 0.36 tolerated(0.34) probably_damaging(0.947) TCGA-FD-A3SS-01 2 86364195 86364195 C T PTCD3 Silent p.F637F 0.14 TCGA-FD-A3SS-01 2 8870993 8870993 G A KIDINS220 Nonsense_Mutation p.Q1725* 0.24 TCGA-FD-A3SS-01 2 96686904 96686904 G A GPAT2 3'Flank 0.12 TCGA-FD-A3SS-01 2 98274919 98274919 C T ACTR1B Missense_Mutation p.E210K 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 3 10084780 10084780 T G FANCD2 Missense_Mutation p.L312W 0.23 deleterious(0) probably_damaging(0.991) TCGA-FD-A3SS-01 3 101572646 101572646 G C NFKBIZ Missense_Mutation p.E426Q 0.41 deleterious(0.01) probably_damaging(0.922) TCGA-FD-A3SS-01 3 11067485 11067485 C T SLC6A1 Silent p.I292I 0.06 TCGA-FD-A3SS-01 3 111603414 111603414 C G PHLDB2 Missense_Mutation p.L164V 0.19 tolerated(0.51) benign(0.04) TCGA-FD-A3SS-01 3 111603734 111603734 C G PHLDB2 Silent p.L270L 0.19 TCGA-FD-A3SS-01 3 113724603 113724603 G A KIAA1407 Silent p.T540T 0.04 TCGA-FD-A3SS-01 3 115395213 115395213 T C GAP43 Silent p.P164P 0.39 TCGA-FD-A3SS-01 3 125828793 125828793 G A ALDH1L1 Missense_Mutation p.R791W 0.25 deleterious(0) probably_damaging(0.928) TCGA-FD-A3SS-01 3 129546893 129546893 C T TMCC1 Missense_Mutation p.R110Q 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.574) TCGA-FD-A3SS-01 3 130290033 130290033 G A COL6A6 Missense_Mutation p.D925N 0.16 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 3 133647541 133647541 G C C3orf36 Missense_Mutation p.S36C 0.17 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-FD-A3SS-01 3 1367574 1367574 C G CNTN6 Missense_Mutation p.A341G 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 3 140978986 140978986 G A ACPL2 5'UTR 0.37 TCGA-FD-A3SS-01 3 141163197 141163197 G T ZBTB38 Missense_Mutation p.G656V 0.14 deleterious(0.03) possibly_damaging(0.581) TCGA-FD-A3SS-01 3 1414637 1414637 G C CNTN6 Missense_Mutation p.R595T 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3SS-01 3 148868438 148868438 G A HPS3 Missense_Mutation p.E406K 0.14 deleterious(0.02) benign(0.146) TCGA-FD-A3SS-01 3 160155725 160155725 G C TRIM59 3'UTR 0.22 TCGA-FD-A3SS-01 3 160156793 160156793 C T TRIM59 Missense_Mutation p.R60K 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 3 182577088 182577088 G A ATP11B Missense_Mutation p.E381K 0.42 tolerated(0.15) benign(0.256) TCGA-FD-A3SS-01 3 183824447 183824447 C G HTR3E Missense_Mutation p.S472C 0.26 deleterious(0.02) benign(0.366) TCGA-FD-A3SS-01 3 188327169 188327169 C T LPP Missense_Mutation p.S217L 0.10 tolerated(0.06) benign(0.14) TCGA-FD-A3SS-01 3 194117344 194117344 C T GP5 Silent p.E556E 0.17 TCGA-FD-A3SS-01 3 28454785 28454785 G A ZCWPW2 Missense_Mutation p.E76K 0.05 deleterious(0) probably_damaging(0.989) TCGA-FD-A3SS-01 3 29628627 29628627 C G RBMS3 Missense_Mutation p.D110E 0.08 tolerated(0.27) probably_damaging(0.998) TCGA-FD-A3SS-01 3 3887485 3887485 C T LRRN1 Missense_Mutation p.T387I 0.42 deleterious(0) benign(0.316) TCGA-FD-A3SS-01 3 43122498 43122498 G A POMGNT2 Silent p.F142F 0.10 TCGA-FD-A3SS-01 3 45000761 45000761 G C ZDHHC3 Silent p.L56L 0.08 TCGA-FD-A3SS-01 3 45000794 45000794 G A ZDHHC3 Silent p.I45I 0.12 TCGA-FD-A3SS-01 3 46306895 46306895 C G CCR3 Silent p.L103L 0.05 TCGA-FD-A3SS-01 3 49051521 49051521 C G WDR6 Missense_Mutation p.R882G 0.04 deleterious(0) benign(0.244) TCGA-FD-A3SS-01 3 49081854 49081854 C T QRICH1 Silent p.L585L 0.03 TCGA-FD-A3SS-01 3 49331930 49331930 G A USP4 Missense_Mutation p.S598L 0.09 tolerated(0.7) benign(0.039) TCGA-FD-A3SS-01 3 53902769 53902769 C G ACTR8 Missense_Mutation p.E618Q 0.17 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 3 58183687 58183687 C A DNASE1L3 Missense_Mutation p.D189Y 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 3 58196496 58196496 C T DNASE1L3 Silent p.V46V 0.04 TCGA-FD-A3SS-01 3 58486802 58486802 C T KCTD6 Nonsense_Mutation p.Q53* 0.34 TCGA-FD-A3SS-01 3 9776368 9776368 C A BRPF1 Silent p.R182R 0.33 TCGA-FD-A3SS-01 3 9945786 9945786 C T IL17RE Silent p.V73V 0.30 TCGA-FD-A3SS-01 4 100496018 100496018 C T MTTP 5'UTR 0.53 TCGA-FD-A3SS-01 4 114276668 114276668 G A ANK2 Silent p.E2298E 0.24 TCGA-FD-A3SS-01 4 1161177 1161177 C A SPON2 3'UTR 0.33 TCGA-FD-A3SS-01 4 123843692 123843692 C G NUDT6 Silent p.A12A 0.27 TCGA-FD-A3SS-01 4 153691640 153691640 C A TIGD4 Missense_Mutation p.D173Y 0.32 deleterious(0) possibly_damaging(0.804) TCGA-FD-A3SS-01 4 153691892 153691892 C A TIGD4 Nonsense_Mutation p.E89* 0.29 TCGA-FD-A3SS-01 4 153691920 153691920 C T TIGD4 Silent p.L79L 0.29 TCGA-FD-A3SS-01 4 155665889 155665889 C G LRAT Silent p.L137L 0.38 TCGA-FD-A3SS-01 4 16590352 16590352 C G LDB2 Missense_Mutation p.R171T 0.09 deleterious(0) probably_damaging(0.992) TCGA-FD-A3SS-01 4 169212970 169212970 G C DDX60 Missense_Mutation p.L324V 0.04 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 4 183267846 183267846 C A TENM3 Missense_Mutation p.A92E 0.49 tolerated_low_confidence(0.54) possibly_damaging(0.849) TCGA-FD-A3SS-01 4 186423477 186423477 C T PDLIM3 Missense_Mutation p.D356N 0.34 deleterious(0) possibly_damaging(0.455) TCGA-FD-A3SS-01 4 2951772 2951772 C A NOP14 Nonsense_Mutation p.E391* 0.04 TCGA-FD-A3SS-01 4 3148627 3148627 C G HTT Missense_Mutation p.L1083V 0.03 benign(0.014) TCGA-FD-A3SS-01 4 367654 367654 G A ZNF141 3'UTR 0.40 TCGA-FD-A3SS-01 4 44176909 44176909 C - KCTD8 Frame_Shift_Del p.M440Ifs*44 0.15 TCGA-FD-A3SS-01 4 47583998 47583998 G A ATP10D Missense_Mutation p.D1224N 0.26 deleterious(0.01) benign(0.424) TCGA-FD-A3SS-01 4 5749989 5749989 G T EVC Missense_Mutation p.A352S 0.70 tolerated(0.32) benign(0.079) TCGA-FD-A3SS-01 4 5868392 5868392 C A CRMP1 Intron 0.50 TCGA-FD-A3SS-01 4 70359471 70359471 G C UGT2B4 Silent p.L270L 0.06 TCGA-FD-A3SS-01 4 71019995 71019995 C T C4orf40 5'UTR 0.20 TCGA-FD-A3SS-01 4 71063726 71063726 C G ODAM Missense_Mutation p.S76C 0.21 deleterious(0) probably_damaging(0.938) TCGA-FD-A3SS-01 4 72994488 72994488 G T NPFFR2 Missense_Mutation p.M162I 0.13 tolerated(0.14) benign(0.147) TCGA-FD-A3SS-01 4 74284010 74284010 G A ALB Missense_Mutation p.R545K 0.34 tolerated(1) benign(0) TCGA-FD-A3SS-01 4 77234299 77234299 T G CCDC158 3'UTR 0.34 TCGA-FD-A3SS-01 4 780459 780459 C T CPLX1 Missense_Mutation p.E79K 0.46 deleterious(0.02) possibly_damaging(0.747) TCGA-FD-A3SS-01 4 83905998 83905998 G A LIN54 5'UTR 0.47 TCGA-FD-A3SS-01 4 84457852 84457852 C T AGPAT9 Missense_Mutation p.S26L 0.17 deleterious(0) benign(0.222) TCGA-FD-A3SS-01 4 88238288 88238288 C T HSD17B13 Missense_Mutation p.E136K 0.39 tolerated(0.49) benign(0.41) TCGA-FD-A3SS-01 4 947001 947001 C A TMEM175 Missense_Mutation p.F162L 0.13 deleterious(0.02) benign(0.013) TCGA-FD-A3SS-01 4 9783854 9783854 G A DRD5 Silent p.R67R 0.53 TCGA-FD-A3SS-01 4 9783920 9783920 C T DRD5 Silent p.F89F 0.44 TCGA-FD-A3SS-01 4 99802262 99802262 G C EIF4E Missense_Mutation p.P222A 0.19 tolerated(0.69) benign(0.002) TCGA-FD-A3SS-01 5 11199639 11199639 C - CTNND2 Frame_Shift_Del p.N634Tfs*9 0.42 TCGA-FD-A3SS-01 5 112103071 112103071 G T APC Nonsense_Mutation p.E136* 0.69 TCGA-FD-A3SS-01 5 112770257 112770257 C T TSSK1B Missense_Mutation p.V94I 0.31 tolerated(0.18) benign(0.374) TCGA-FD-A3SS-01 5 122717855 122717855 C T CEP120 Missense_Mutation p.E685K 0.07 deleterious(0.01) probably_damaging(0.909) TCGA-FD-A3SS-01 5 13919382 13919382 C G DNAH5 Missense_Mutation p.R293T 0.13 possibly_damaging(0.537) TCGA-FD-A3SS-01 5 139917811 139917811 C T ANKHD1 Nonsense_Mutation p.Q2457* 0.25 TCGA-FD-A3SS-01 5 139918544 139918544 C G ANKHD1 Missense_Mutation p.S2482C 0.32 probably_damaging(0.961) TCGA-FD-A3SS-01 5 140166145 140166145 C T PCDHA1 Silent p.I90I 0.05 TCGA-FD-A3SS-01 5 140222414 140222414 C T PCDHA8 Missense_Mutation p.S503L 0.58 tolerated_low_confidence(0.21) benign(0.003) TCGA-FD-A3SS-01 5 140256924 140256924 C T PCDHA12 Missense_Mutation p.H623Y 0.07 deleterious_low_confidence(0.01) benign(0.005) TCGA-FD-A3SS-01 5 140594772 140594772 G A PCDHB13 Silent p.E359E 0.04 TCGA-FD-A3SS-01 5 148207582 148207582 C A ADRB2 Missense_Mutation p.S396R 0.49 tolerated_low_confidence(0.45) benign(0.037) TCGA-FD-A3SS-01 5 148745672 148745672 T C PCYOX1L Missense_Mutation p.L213P 0.08 deleterious(0.01) probably_damaging(0.98) TCGA-FD-A3SS-01 5 170239053 170239053 G A GABRP Missense_Mutation p.E372K 0.21 tolerated(0.26) probably_damaging(0.985) TCGA-FD-A3SS-01 5 175572124 175572124 C A RP11-844P9.2 RNA 0.50 TCGA-FD-A3SS-01 5 176409576 176409576 G A UIMC1 Missense_Mutation p.S14F 0.14 tolerated(0.08) benign(0.005) TCGA-FD-A3SS-01 5 180326301 180326301 G A BTNL8 5'UTR 0.15 TCGA-FD-A3SS-01 5 180326337 180326337 G C BTNL8 Silent p.L9L 0.18 TCGA-FD-A3SS-01 5 40852632 40852632 C T CARD6 Nonsense_Mutation p.Q400* 0.32 TCGA-FD-A3SS-01 5 43039532 43039532 C T ANXA2R 3'UTR 0.09 TCGA-FD-A3SS-01 5 5237174 5237174 G A ADAMTS16 Missense_Mutation p.E706K 0.20 tolerated(0.45) benign(0.015) TCGA-FD-A3SS-01 5 55178994 55178994 C T IL31RA Nonsense_Mutation p.R193* 0.30 TCGA-FD-A3SS-01 5 66386048 66386048 A G MAST4 Silent p.S274S 0.53 TCGA-FD-A3SS-01 5 6750570 6750570 C T PAPD7 Missense_Mutation p.S355L 0.16 deleterious(0) possibly_damaging(0.504) TCGA-FD-A3SS-01 5 72192888 72192888 G C TNPO1 Missense_Mutation p.E750Q 0.33 deleterious(0.03) benign(0.008) TCGA-FD-A3SS-01 5 96086315 96086315 C T CAST Missense_Mutation p.P444S 0.24 tolerated(0.05) benign(0.169) TCGA-FD-A3SS-01 6 101163293 101163293 C G ASCC3 Intron 0.18 TCGA-FD-A3SS-01 6 10404933 10404933 G A TFAP2A Missense_Mutation p.S191F 0.43 deleterious(0.05) benign(0.112) TCGA-FD-A3SS-01 6 105577271 105577271 A G BVES Silent p.L112L 0.30 TCGA-FD-A3SS-01 6 121768780 121768780 C A GJA1 Missense_Mutation p.Q263K 0.18 tolerated(0.3) benign(0) TCGA-FD-A3SS-01 6 128411102 128411102 C T PTPRK Missense_Mutation p.E400K 0.28 deleterious(0.01) benign(0.103) TCGA-FD-A3SS-01 6 130392177 130392177 G C L3MBTL3 Missense_Mutation p.K383N 0.17 tolerated(0.05) probably_damaging(1) TCGA-FD-A3SS-01 6 130460929 130460929 C G L3MBTL3 3'UTR 0.24 TCGA-FD-A3SS-01 6 136582453 136582453 C T BCLAF1 Missense_Mutation p.E903K 0.05 deleterious(0.05) unknown(0) TCGA-FD-A3SS-01 6 136589379 136589379 C T BCLAF1 Missense_Mutation p.R773K 0.08 tolerated(0.43) benign(0.14) TCGA-FD-A3SS-01 6 136597320 136597320 C G BCLAF1 Missense_Mutation p.R448T 0.06 deleterious(0) benign(0.087) TCGA-FD-A3SS-01 6 138619775 138619775 G A KIAA1244 Silent p.Q1227Q 0.52 TCGA-FD-A3SS-01 6 146242491 146242491 C T SHPRH Missense_Mutation p.E1274K 0.13 deleterious(0.01) possibly_damaging(0.636) TCGA-FD-A3SS-01 6 15468887 15468887 C T JARID2 Missense_Mutation p.S203L 0.24 deleterious(0) possibly_damaging(0.563) TCGA-FD-A3SS-01 6 158735144 158735144 G A TULP4 Silent p.E32E 0.34 TCGA-FD-A3SS-01 6 16144013 16144024 TCGTGCTCTTGT GA MYLIP Frame_Shift_Del p.I249Rfs*4 0.34 TCGA-FD-A3SS-01 6 16144024 16144024 T A MYLIP Missense_Mutation p.F253I 0.27 tolerated(0.13) probably_damaging(0.98) TCGA-FD-A3SS-01 6 170156863 170156863 C T ERMARD Missense_Mutation p.L156F 0.27 deleterious(0) probably_damaging(0.983) TCGA-FD-A3SS-01 6 24528378 24528378 C T ALDH5A1 Silent p.L456L 0.43 TCGA-FD-A3SS-01 6 26184092 26184092 G A HIST1H2BE Silent p.Q23Q 0.33 TCGA-FD-A3SS-01 6 28200360 28200360 G A ZSCAN9 Missense_Mutation p.D248N 0.07 tolerated(0.69) benign(0.028) TCGA-FD-A3SS-01 6 28872256 28872256 C T TRIM27 Missense_Mutation p.G378E 0.17 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SS-01 6 29429430 29429430 G A OR2H1 5'UTR 0.41 TCGA-FD-A3SS-01 6 31116208 31116208 C T CCHCR1 Silent p.L518L 0.04 TCGA-FD-A3SS-01 6 33284067 33284067 G A ZBTB22 Silent p.F209F 0.37 TCGA-FD-A3SS-01 6 37336788 37336788 C T RNF8 Silent p.L257L 0.18 TCGA-FD-A3SS-01 6 42196160 42196160 C T TRERF1 Missense_Mutation p.E1176K 0.07 deleterious_low_confidence(0) benign(0.292) TCGA-FD-A3SS-01 6 43521164 43521164 C T XPO5 Missense_Mutation p.M506I 0.20 deleterious(0.02) benign(0.415) TCGA-FD-A3SS-01 6 43528732 43528732 C G XPO5 Missense_Mutation p.D342H 0.16 deleterious(0.02) benign(0.221) TCGA-FD-A3SS-01 6 43555015 43555015 G A POLH Silent p.R93R 0.07 TCGA-FD-A3SS-01 6 43555211 43555211 G C POLH Missense_Mutation p.E159Q 0.07 tolerated(0.44) benign(0.005) TCGA-FD-A3SS-01 6 46644175 46644175 G A SLC25A27 Missense_Mutation p.G319E 0.19 deleterious(0) probably_damaging(0.943) TCGA-FD-A3SS-01 6 47512409 47512409 G A CD2AP Silent p.L129L 0.04 TCGA-FD-A3SS-01 6 47563717 47563717 C G CD2AP Missense_Mutation p.P410R 0.14 deleterious(0.01) possibly_damaging(0.77) TCGA-FD-A3SS-01 6 64395311 64395311 C A PHF3 Missense_Mutation p.S563Y 0.41 deleterious_low_confidence(0) benign(0.299) TCGA-FD-A3SS-01 6 82459924 82459924 C G FAM46A Missense_Mutation p.D273H 0.17 tolerated(0.38) benign(0.049) TCGA-FD-A3SS-01 6 90420473 90420473 G C MDN1 Silent p.L2564L 0.30 TCGA-FD-A3SS-01 6 90577477 90577477 G C CASP8AP2 RNA 0.40 TCGA-FD-A3SS-01 7 100385706 100385706 T A ZAN Missense_Mutation p.I2391N 0.07 unknown(0) TCGA-FD-A3SS-01 7 100395059 100395059 G C ZAN Missense_Mutation p.E2688Q 0.38 unknown(0) TCGA-FD-A3SS-01 7 100806828 100806828 C T VGF Missense_Mutation p.E433K 0.17 tolerated_low_confidence(0.21) unknown(0) TCGA-FD-A3SS-01 7 102106340 102106340 G A LRWD1 Missense_Mutation p.D53N 0.36 tolerated(0.07) probably_damaging(1) TCGA-FD-A3SS-01 7 102113555 102113555 G A LRWD1 3'UTR 0.23 TCGA-FD-A3SS-01 7 103207108 103207108 C T RELN Missense_Mutation p.D1563N 0.31 deleterious(0.02) benign(0.305) TCGA-FD-A3SS-01 7 106924162 106924162 C G COG5 Missense_Mutation p.L474F 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-FD-A3SS-01 7 113518227 113518227 C T PPP1R3A Missense_Mutation p.E974K 0.36 tolerated(0.9) benign(0.003) TCGA-FD-A3SS-01 7 115624399 115624399 G C TFEC Missense_Mutation p.L33V 0.17 deleterious(0.01) benign(0.024) TCGA-FD-A3SS-01 7 116380132 116380132 G A MET Silent p.G507G 0.05 TCGA-FD-A3SS-01 7 126542614 126542614 G A GRM8 Missense_Mutation p.H380Y 0.08 tolerated(0.13) benign(0.086) TCGA-FD-A3SS-01 7 128610354 128610354 C T TNPO3 Missense_Mutation p.E816K 0.15 tolerated(0.1) benign(0.037) TCGA-FD-A3SS-01 7 141645174 141645174 C T CLEC5A Missense_Mutation p.D36N 0.30 tolerated(0.56) benign(0.003) TCGA-FD-A3SS-01 7 142569636 142569636 C T TRPV6 Missense_Mutation p.E668K 0.22 tolerated(0.19) benign(0.004) TCGA-FD-A3SS-01 7 147869504 147869504 G C CNTNAP2 Missense_Mutation p.E982Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-FD-A3SS-01 7 149129350 149129350 C T ZNF777 Silent p.K671K 0.18 TCGA-FD-A3SS-01 7 151135092 151135092 G T CRYGN Missense_Mutation p.P87H 0.22 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 7 151860518 151860518 G A KMT2C Missense_Mutation p.R3382W 0.37 probably_damaging(0.997) TCGA-FD-A3SS-01 7 157023793 157023793 G A UBE3C Silent p.R751R 0.05 TCGA-FD-A3SS-01 7 158282442 158282442 C T PTPRN2 Missense_Mutation p.E50K 0.44 deleterious(0) benign(0.017) TCGA-FD-A3SS-01 7 2473142 2473142 G A CHST12 Missense_Mutation p.E290K 0.10 tolerated(0.2) possibly_damaging(0.871) TCGA-FD-A3SS-01 7 29915522 29915522 G A WIPF3 Missense_Mutation p.G56E 0.13 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 7 31682680 31682680 C G CCDC129 Missense_Mutation p.L592V 0.05 tolerated(0.21) benign(0.039) TCGA-FD-A3SS-01 7 33063689 33063689 C G NT5C3A Missense_Mutation p.R95T 0.20 deleterious(0.03) benign(0.376) TCGA-FD-A3SS-01 7 48313605 48313605 C G ABCA13 Missense_Mutation p.L1448V 0.16 benign(0.004) TCGA-FD-A3SS-01 7 57187752 57187752 C T ZNF479 Missense_Mutation p.R457K 0.05 tolerated(0.95) benign(0.05) TCGA-FD-A3SS-01 7 57188486 57188486 G A ZNF479 Silent p.S212S 0.31 TCGA-FD-A3SS-01 7 57188487 57188487 G A ZNF479 Missense_Mutation p.S212F 0.32 tolerated(0.31) benign(0.021) TCGA-FD-A3SS-01 7 76033804 76033804 G A SRCRB4D 5'UTR 0.17 TCGA-FD-A3SS-01 7 82072690 82072690 G A CACNA2D1 Missense_Mutation p.S29L 0.23 tolerated(0.35) benign(0.182) TCGA-FD-A3SS-01 7 87165842 87165842 C T ABCB1 Missense_Mutation p.D805N 0.10 deleterious(0) possibly_damaging(0.756) TCGA-FD-A3SS-01 7 98446226 98446226 G C TMEM130 Missense_Mutation p.Q367E 0.10 deleterious(0.01) benign(0.096) TCGA-FD-A3SS-01 7 98581089 98581089 C T TRRAP Missense_Mutation p.P3003L 0.51 benign(0.004) TCGA-FD-A3SS-01 7 99247765 99247765 G C CYP3A5 Silent p.L448L 0.05 TCGA-FD-A3SS-01 8 100866426 100866426 G A VPS13B Silent p.A3628A 0.07 TCGA-FD-A3SS-01 8 107763196 107763196 G C OXR1 3'UTR 0.37 TCGA-FD-A3SS-01 8 11637344 11637344 G C NEIL2 Missense_Mutation p.D126H 0.14 tolerated(0.34) benign(0.017) TCGA-FD-A3SS-01 8 133053363 133053363 C G OC90 Missense_Mutation p.E129Q 0.25 deleterious(0.02) probably_damaging(0.922) TCGA-FD-A3SS-01 8 139701194 139701194 C A COL22A1 Missense_Mutation p.G943V 0.16 unknown(0) TCGA-FD-A3SS-01 8 143396398 143396398 G A TSNARE1 Missense_Mutation p.S347L 0.14 tolerated(0.08) benign(0.017) TCGA-FD-A3SS-01 8 144358969 144358969 G C GLI4 Missense_Mutation p.E376Q 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A3SS-01 8 144889748 144889748 C G SCRIB Missense_Mutation p.E718Q 0.08 probably_damaging(0.999) TCGA-FD-A3SS-01 8 17813070 17813070 C T PCM1 Silent p.S460S 0.23 TCGA-FD-A3SS-01 8 2832056 2832056 C G CSMD1 Missense_Mutation p.R2886T 0.43 benign(0.001) TCGA-FD-A3SS-01 8 39537620 39537620 C T ADAM18 Nonsense_Mutation p.Q566* 0.07 TCGA-FD-A3SS-01 8 41906305 41906305 G C KAT6A Nonsense_Mutation p.S64* 0.12 TCGA-FD-A3SS-01 8 42232338 42232338 G A DKK4 Missense_Mutation p.P119L 0.24 tolerated(0.13) benign(0.382) TCGA-FD-A3SS-01 8 56686088 56686088 G A TGS1 5'UTR 0.29 TCGA-FD-A3SS-01 8 68211501 68211501 T C ARFGEF1 Missense_Mutation p.I134M 0.32 deleterious(0) probably_damaging(0.937) TCGA-FD-A3SS-01 8 77766229 77766229 C T ZFHX4 Nonsense_Mutation p.Q2358* 0.17 TCGA-FD-A3SS-01 8 88885613 88885613 G A DCAF4L2 Missense_Mutation p.A196V 0.34 tolerated(0.46) benign(0.091) TCGA-FD-A3SS-01 8 95556077 95556077 G A KIAA1429 Silent p.L53L 0.18 TCGA-FD-A3SS-01 9 102729973 102729973 C T STX17 Silent p.V207V 0.43 TCGA-FD-A3SS-01 9 107266864 107266864 G A OR13F1 Missense_Mutation p.M107I 0.38 deleterious(0.02) benign(0.049) TCGA-FD-A3SS-01 9 111746665 111746665 G A CTNNAL1 Missense_Mutation p.L231F 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 9 112042115 112042115 G A EPB41L4B Silent p.L131L 0.18 TCGA-FD-A3SS-01 9 123900853 123900853 G C CNTRL Missense_Mutation p.E745Q 0.21 probably_damaging(0.96) TCGA-FD-A3SS-01 9 125910117 125910117 C A STRBP Nonsense_Mutation p.E360* 0.19 TCGA-FD-A3SS-01 9 126143804 126143804 C T DENND1A Silent p.Q979Q 0.15 TCGA-FD-A3SS-01 9 131860309 131860309 C T CRAT Missense_Mutation p.D483N 0.06 tolerated(0.11) benign(0.041) TCGA-FD-A3SS-01 9 133967249 133967249 G A LAMC3 3'UTR 0.40 TCGA-FD-A3SS-01 9 139873474 139873474 C T PTGDS Silent p.L48L 0.11 TCGA-FD-A3SS-01 9 139908491 139908491 C T ABCA2 Splice_Site p.X1414_splice 0.27 TCGA-FD-A3SS-01 9 15486887 15486887 C T PSIP1 Missense_Mutation p.E111K 0.37 tolerated(0.13) benign(0.068) TCGA-FD-A3SS-01 9 15920318 15920318 C G CCDC171 Missense_Mutation p.I1217M 0.13 tolerated(0.1) probably_damaging(0.943) TCGA-FD-A3SS-01 9 19324380 19324380 C T DENND4C Missense_Mutation p.R610C 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A3SS-01 9 19619665 19619665 C T SLC24A2 Missense_Mutation p.G332E 0.07 deleterious(0.02) possibly_damaging(0.641) TCGA-FD-A3SS-01 9 2047456 2047456 G T SMARCA2 Missense_Mutation p.V340L 0.31 benign(0.167) TCGA-FD-A3SS-01 9 34088417 34088417 C T DCAF12 Silent p.T431T 0.04 TCGA-FD-A3SS-01 9 37948664 37948664 C T SHB Silent p.Q438Q 0.09 TCGA-FD-A3SS-01 9 5969048 5969048 C T KIAA2026 Missense_Mutation p.E395K 0.21 deleterious(0) probably_damaging(0.99) TCGA-FD-A3SS-01 9 65508179 65508179 C T SPATA31A7 Silent p.R68R 0.10 TCGA-FD-A3SS-01 9 8484129 8484129 C T PTPRD Missense_Mutation p.E1135K 0.06 tolerated(0.77) benign(0.005) TCGA-FD-A3SS-01 9 8518022 8518022 T C PTPRD Missense_Mutation p.M457V 0.32 tolerated(0.28) possibly_damaging(0.901) TCGA-FD-A3SS-01 9 86586835 86586835 C A HNRNPK Silent p.R305R 0.11 TCGA-FD-A3SS-01 9 86586966 86586966 C G HNRNPK Missense_Mutation p.D262H 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A3SS-01 9 86592650 86592650 C A HNRNPK Missense_Mutation p.R37I 0.06 deleterious(0) probably_damaging(0.982) TCGA-FD-A3SS-01 9 98209579 98209579 C T PTCH1 Missense_Mutation p.R1320K 0.18 tolerated_low_confidence(0.52) benign(0.057) TCGA-FD-A3SS-01 9 98241349 98241349 G A PTCH1 Missense_Mutation p.S383L 0.43 deleterious(0.02) benign(0.029) TCGA-FD-A3SS-01 X 100542501 100542501 C T TAF7L Missense_Mutation p.E97K 0.11 deleterious(0) possibly_damaging(0.786) TCGA-FD-A3SS-01 X 102004757 102004757 C T BHLHB9 Silent p.I278I 0.28 TCGA-FD-A3SS-01 X 105281031 105281031 G A SERPINA7 Silent p.L7L 0.10 TCGA-FD-A3SS-01 X 106066677 106066677 C G TBC1D8B Missense_Mutation p.P270A 0.72 deleterious(0.04) possibly_damaging(0.824) TCGA-FD-A3SS-01 X 107319443 107319443 A G VSIG1 Silent p.E311E 0.73 TCGA-FD-A3SS-01 X 11133074 11133074 G C HCCS Missense_Mutation p.E74Q 0.05 tolerated(0.62) benign(0.014) TCGA-FD-A3SS-01 X 120181908 120181908 C T GLUD2 Missense_Mutation p.R124C 0.40 deleterious(0) possibly_damaging(0.611) TCGA-FD-A3SS-01 X 128599886 128599886 G C SMARCA1 Missense_Mutation p.Q918E 0.21 tolerated(0.12) possibly_damaging(0.895) TCGA-FD-A3SS-01 X 135593696 135593696 G T HTATSF1 Nonsense_Mutation p.E598* 0.36 TCGA-FD-A3SS-01 X 147733647 147733647 G A AFF2 Missense_Mutation p.E59K 0.06 tolerated_low_confidence(0.12) possibly_damaging(0.874) TCGA-FD-A3SS-01 X 151899702 151899702 G - MAGEA12 3'UTR 0.69 TCGA-FD-A3SS-01 X 153135920 153135920 G A L1CAM Silent p.L243L 0.16 TCGA-FD-A3SS-01 X 153555767 153555767 C T TKTL1 Intron 0.08 TCGA-FD-A3SS-01 X 153557916 153557916 C T TKTL1 Nonsense_Mutation p.Q557* 0.10 TCGA-FD-A3SS-01 X 15540529 15540529 C T BMX Silent p.L191L 0.78 TCGA-FD-A3SS-01 X 32398671 32398671 C G DMD Missense_Mutation p.E1601Q 0.04 possibly_damaging(0.607) TCGA-FD-A3SS-01 X 41007694 41007694 G A USP9X Missense_Mutation p.D498N 0.07 deleterious(0.02) probably_damaging(0.98) TCGA-FD-A3SS-01 X 48372644 48372644 G A PORCN Missense_Mutation p.E246K 0.30 deleterious(0.04) probably_damaging(0.934) TCGA-FD-A3SS-01 X 53106308 53106308 C T GPR173 Missense_Mutation p.R169W 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-FD-A3SS-01 X 55479335 55479335 C T MAGEH1 Silent p.V176V 0.72 TCGA-FD-A3SS-01 X 57162619 57162619 C G SPIN2A Missense_Mutation p.E138Q 0.26 deleterious(0.03) benign(0.252) TCGA-FD-A3SS-01 X 63488550 63488550 G A MTMR8 Missense_Mutation p.S661F 0.11 deleterious_low_confidence(0) benign(0.135) TCGA-FD-A3SS-01 X 70149870 70149870 G A SLC7A3 Intron 0.12 TCGA-FD-A3SS-01 X 72433764 72433764 C G NAP1L2 Missense_Mutation p.E189Q 0.06 tolerated(0.12) probably_damaging(0.995) TCGA-FD-A43N-01 10 104357040 104357040 C T SUFU Silent p.L300L 0.13 TCGA-FD-A43N-01 10 107005382 107005382 G A SORCS3 Missense_Mutation p.G984E 0.21 deleterious(0.01) benign(0.38) TCGA-FD-A43N-01 10 12071261 12071261 C T UPF2 Missense_Mutation p.V210M 0.04 deleterious(0.01) probably_damaging(0.971) TCGA-FD-A43N-01 10 126655268 126655268 C G ZRANB1 Missense_Mutation p.S307C 0.10 deleterious(0) benign(0.191) TCGA-FD-A43N-01 10 129906877 129906877 A G MKI67 Missense_Mutation p.L1076P 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A43N-01 10 25464936 25464936 G T GPR158 Missense_Mutation p.R196L 0.12 deleterious(0) probably_damaging(0.989) TCGA-FD-A43N-01 10 81270326 81270326 C T AL133481.1 5'UTR 0.30 TCGA-FD-A43N-01 10 84745188 84745188 A T NRG3 Missense_Mutation p.I640F 0.05 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-FD-A43N-01 10 90427380 90427380 G A LIPF Missense_Mutation p.E64K 0.11 tolerated(0.2) benign(0.025) TCGA-FD-A43N-01 10 91348517 91348517 C A PANK1 Silent p.V543V 0.06 TCGA-FD-A43N-01 10 93786488 93786488 C T BTAF1 Missense_Mutation p.R1739W 0.45 deleterious(0) probably_damaging(1) TCGA-FD-A43N-01 10 98146738 98146738 C A TLL2 Missense_Mutation p.E608D 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-FD-A43N-01 11 101833798 101833798 A G KIAA1377 Missense_Mutation p.T678A 0.41 tolerated(1) benign(0) TCGA-FD-A43N-01 11 102645974 102645974 T C MMP10 Silent p.S337S 0.10 TCGA-FD-A43N-01 11 102818648 102818648 G C MMP13 Missense_Mutation p.L395V 0.11 deleterious(0.01) benign(0.117) TCGA-FD-A43N-01 11 108117739 108117739 A G ATM Missense_Mutation p.D317G 0.38 deleterious(0) probably_damaging(0.927) TCGA-FD-A43N-01 11 11454225 11454225 G A GALNT18 Missense_Mutation p.R180C 0.20 deleterious(0) probably_damaging(0.991) TCGA-FD-A43N-01 11 123810687 123810687 C T OR4D5 Missense_Mutation p.R122C 0.63 deleterious(0.03) benign(0.007) TCGA-FD-A43N-01 11 126080938 126080938 C G RPUSD4 Missense_Mutation p.A68P 0.45 tolerated(1) benign(0) TCGA-FD-A43N-01 11 126201377 126201377 C T DCPS Nonsense_Mutation p.R152* 0.11 TCGA-FD-A43N-01 11 133790479 133790479 G A IGSF9B Silent p.F1047F 0.61 TCGA-FD-A43N-01 11 47311518 47311518 G A MADD Missense_Mutation p.E973K 0.48 deleterious(0) probably_damaging(0.995) TCGA-FD-A43N-01 11 62285546 62285546 G A AHNAK Missense_Mutation p.S5448L 0.34 probably_damaging(0.954) TCGA-FD-A43N-01 11 62285979 62285979 G C AHNAK Missense_Mutation p.L5304V 0.34 possibly_damaging(0.869) TCGA-FD-A43N-01 11 62286481 62286481 G C AHNAK Missense_Mutation p.I5136M 0.34 benign(0.124) TCGA-FD-A43N-01 11 62288108 62288108 G C AHNAK Missense_Mutation p.S4594C 0.39 probably_damaging(0.978) TCGA-FD-A43N-01 11 64678575 64678575 G A ATG2A Silent p.F467F 0.35 TCGA-FD-A43N-01 11 66108764 66108764 C G BRMS1 Missense_Mutation p.E91Q 0.11 tolerated(0.61) benign(0.444) TCGA-FD-A43N-01 11 6647218 6647218 C T DCHS1 Missense_Mutation p.V2222I 0.43 tolerated(1) benign(0.004) TCGA-FD-A43N-01 11 67205880 67205880 C T CORO1B Silent p.E479E 0.06 TCGA-FD-A43N-01 11 76255837 76255837 G A C11orf30 Missense_Mutation p.A1082T 0.07 tolerated_low_confidence(0.11) probably_damaging(0.956) TCGA-FD-A43N-01 11 76507118 76507118 C T TSKU Missense_Mutation p.T153M 0.29 tolerated(0.07) possibly_damaging(0.817) TCGA-FD-A43N-01 12 100452655 100452655 C G UHRF1BP1L Silent p.S800S 0.13 TCGA-FD-A43N-01 12 101493479 101493479 C T ANO4 Silent p.F675F 0.25 TCGA-FD-A43N-01 12 112082174 112082174 G A BRAP Silent p.V536V 0.34 TCGA-FD-A43N-01 12 116424266 116424266 G A MED13L Silent p.P1381P 0.15 TCGA-FD-A43N-01 12 124106252 124106252 C T EIF2B1 3'UTR 0.27 TCGA-FD-A43N-01 12 44171530 44171530 G C IRAK4 Missense_Mutation p.D272H 0.07 deleterious(0) probably_damaging(0.942) TCGA-FD-A43N-01 12 4853757 4853757 C T GALNT8 Missense_Mutation p.R251W 0.40 deleterious(0.03) possibly_damaging(0.696) TCGA-FD-A43N-01 12 52174464 52174464 T A SCN8A Missense_Mutation p.L1284Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-FD-A43N-01 12 56120682 56120683 - AG CD63 Frame_Shift_Ins p.R108Lfs*5 0.08 TCGA-FD-A43N-01 12 57065601 57065601 T C PTGES3 Missense_Mutation p.I73V 0.27 tolerated(0.47) benign(0.001) TCGA-FD-A43N-01 12 57466640 57466649 ACGCTTTTCA - TMEM194A Frame_Shift_Del p.C58Wfs*27 0.12 TCGA-FD-A43N-01 12 60168942 60168942 T G SLC16A7 Missense_Mutation p.M289R 0.13 deleterious(0.02) possibly_damaging(0.864) TCGA-FD-A43N-01 13 107145251 107145251 C T EFNB2 3'UTR 0.40 TCGA-FD-A43N-01 13 113439521 113439521 G C ATP11A Missense_Mutation p.E38Q 0.12 deleterious(0.02) benign(0.033) TCGA-FD-A43N-01 13 113975984 113975984 C G LAMP1 Silent p.V352V 0.19 TCGA-FD-A43N-01 13 25367381 25367381 G A RNF17 Silent p.Q379Q 0.36 TCGA-FD-A43N-01 13 27255279 27255279 G T WASF3 Missense_Mutation p.A269S 0.29 tolerated(0.4) benign(0.009) TCGA-FD-A43N-01 13 53421522 53421522 G A PCDH8 Silent p.N350N 0.12 TCGA-FD-A43N-01 14 21109171 21109171 G T OR6S1 Missense_Mutation p.A227E 0.05 deleterious(0) possibly_damaging(0.886) TCGA-FD-A43N-01 14 23548900 23548900 C T ACIN1 Silent p.P606P 0.35 TCGA-FD-A43N-01 14 24846795 24846795 G A NFATC4 3'UTR 0.44 TCGA-FD-A43N-01 14 36840915 36840915 G A DPPA3P2 RNA 0.51 TCGA-FD-A43N-01 14 38060573 38060573 G - FOXA1 Frame_Shift_Del p.*473Sfs*11 0.13 TCGA-FD-A43N-01 14 58030927 58030927 C T SLC35F4 Missense_Mutation p.D498N 0.18 tolerated(0.19) possibly_damaging(0.632) TCGA-FD-A43N-01 14 64724049 64724049 C T ESR2 Missense_Mutation p.R329Q 0.32 tolerated(0.47) benign(0.176) TCGA-FD-A43N-01 14 71479732 71479732 C A PCNX Missense_Mutation p.L937I 0.13 deleterious(0.02) probably_damaging(0.956) TCGA-FD-A43N-01 14 78174449 78174449 C G SLIRP 5'UTR 0.13 TCGA-FD-A43N-01 14 89073637 89073637 C T ZC3H14 Missense_Mutation p.R600C 0.20 deleterious(0) probably_damaging(0.993) TCGA-FD-A43N-01 14 95923534 95923534 G A SYNE3 Nonsense_Mutation p.Q257* 0.14 TCGA-FD-A43N-01 15 33955863 33955863 C T RYR3 Silent p.L1848L 0.48 TCGA-FD-A43N-01 15 42436301 42436301 G A PLA2G4F Missense_Mutation p.R673W 0.19 tolerated(0.08) benign(0.001) TCGA-FD-A43N-01 15 43678471 43678471 C G TUBGCP4 Silent p.L319L 0.23 TCGA-FD-A43N-01 15 49663592 49663592 G A FAM227B Silent p.I339I 0.37 TCGA-FD-A43N-01 15 63881220 63881220 A G USP3 Intron 0.26 TCGA-FD-A43N-01 15 77092648 77092648 T C SCAPER Silent p.P184P 0.51 TCGA-FD-A43N-01 15 85452024 85452024 C G SLC28A1 Missense_Mutation p.Q265E 0.28 deleterious(0) probably_damaging(0.996) TCGA-FD-A43N-01 16 2051696 2051696 C A ZNF598 Missense_Mutation p.V301F 0.12 probably_damaging(0.959) TCGA-FD-A43N-01 16 28508617 28508617 G A APOBR Missense_Mutation p.R752H 0.18 tolerated(0.09) possibly_damaging(0.715) TCGA-FD-A43N-01 16 30486720 30486720 A G ITGAL Silent p.R86R 0.13 TCGA-FD-A43N-01 16 31308861 31308861 C G ITGAM Silent p.L461L 0.20 TCGA-FD-A43N-01 16 89590476 89590476 G T SPG7 Missense_Mutation p.V147F 0.19 tolerated(0.25) possibly_damaging(0.616) TCGA-FD-A43N-01 17 11845695 11845695 G A DNAH9 Missense_Mutation p.E4246K 0.13 benign(0.261) TCGA-FD-A43N-01 17 19284257 19284257 C G MAPK7 Silent p.L245L 0.75 TCGA-FD-A43N-01 17 21825544 21825544 C T FAM27L RNA 0.46 TCGA-FD-A43N-01 17 34958170 34958170 G C MRM1 5'UTR 0.17 TCGA-FD-A43N-01 17 39280193 39280193 C T KRTAP4-12 Missense_Mutation p.C61Y 0.06 deleterious(0.02) unknown(0) TCGA-FD-A43N-01 17 4794934 4794934 G C MINK1 Missense_Mutation p.D642H 0.59 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A43N-01 17 59668448 59668448 C A NACA2 Missense_Mutation p.G32C 0.40 deleterious(0) benign(0.171) TCGA-FD-A43N-01 17 59947181 59947181 G A INTS2 Nonsense_Mutation p.R991* 0.13 TCGA-FD-A43N-01 17 61988190 61988190 A G CSHL1 Silent p.L35L 0.10 TCGA-FD-A43N-01 17 6941487 6941487 G C SLC16A13 Missense_Mutation p.L120F 0.08 deleterious(0) probably_damaging(0.914) TCGA-FD-A43N-01 17 72741582 72741582 C A RAB37 3'UTR 0.39 TCGA-FD-A43N-01 17 7534652 7534652 C G SHBG Silent p.L176L 0.18 TCGA-FD-A43N-01 17 7577077 7577077 C G TP53 Missense_Mutation p.E287D 0.53 tolerated(0.24) benign(0.059) TCGA-FD-A43N-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.56 deleterious(0) probably_damaging(0.985) TCGA-FD-A43N-01 17 7577511 7577511 A T TP53 Missense_Mutation p.L257Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A43N-01 17 77758199 77758199 G A CBX2 Silent p.Q319Q 0.12 TCGA-FD-A43N-01 17 79910744 79910744 G C NOTUM 3'UTR 0.09 TCGA-FD-A43N-01 17 8701260 8701260 C T MFSD6L Missense_Mutation p.M393I 0.14 deleterious(0.03) possibly_damaging(0.739) TCGA-FD-A43N-01 18 20833801 20833801 C G CABLES1 Silent p.L554L 0.66 TCGA-FD-A43N-01 18 29116217 29116217 C G DSG2 Missense_Mutation p.I492M 0.07 tolerated(0.14) possibly_damaging(0.453) TCGA-FD-A43N-01 18 6992672 6992672 G T LAMA1 Missense_Mutation p.L1686I 0.10 tolerated(0.16) benign(0.334) TCGA-FD-A43N-01 19 10798052 10798052 G C ILF3 Missense_Mutation p.G701A 0.37 tolerated(0.33) unknown(0) TCGA-FD-A43N-01 19 1496444 1496444 C T REEP6 Missense_Mutation p.T170I 0.23 tolerated(0.06) benign(0.064) TCGA-FD-A43N-01 19 16528781 16528781 G A EPS15L1 Missense_Mutation p.S362L 0.10 deleterious(0) possibly_damaging(0.896) TCGA-FD-A43N-01 19 17309002 17309002 G C MYO9B Missense_Mutation p.E1375Q 0.12 tolerated(0.1) benign(0.421) TCGA-FD-A43N-01 19 39058462 39058462 C G RYR1 Missense_Mutation p.P4522A 0.08 unknown(0) TCGA-FD-A43N-01 19 40732354 40732354 C A CNTD2 Silent p.L65L 0.22 TCGA-FD-A43N-01 19 41903836 41903836 G T BCKDHA Missense_Mutation p.R35I 0.09 tolerated(0.12) benign(0) TCGA-FD-A43N-01 19 45655625 45655625 G C NKPD1 Silent p.L690L 0.55 TCGA-FD-A43N-01 19 46832591 46832591 G A HIF3A Missense_Mutation p.R523H 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A43N-01 19 50461568 50461568 C G SIGLEC11 Missense_Mutation p.Q541H 0.32 tolerated(0.17) benign(0.057) TCGA-FD-A43N-01 19 53391419 53391419 C G ZNF320 Missense_Mutation p.D35H 0.07 deleterious(0) probably_damaging(0.987) TCGA-FD-A43N-01 19 56572822 56572822 C G NLRP5 Silent p.L1177L 0.39 TCGA-FD-A43N-01 19 5789417 5789417 C T DUS3L Missense_Mutation p.R234Q 0.50 tolerated(1) benign(0) TCGA-FD-A43N-01 19 58238843 58238843 G T ZNF671 Nonsense_Mutation p.C18* 0.11 TCGA-FD-A43N-01 1 110172959 110172959 G A AMPD2 Silent p.P750P 0.16 TCGA-FD-A43N-01 1 119927526 119927526 G A HAO2 Silent p.L137L 0.42 TCGA-FD-A43N-01 1 1469541 1469541 C G ATAD3A 3'UTR 0.44 TCGA-FD-A43N-01 1 149783795 149783795 C T HIST2H2BF Silent p.K28K 0.37 TCGA-FD-A43N-01 1 149783924 149783924 C G HIST2H2BF 5'UTR 0.50 TCGA-FD-A43N-01 1 153604076 153604076 G A S100A1 Intron 0.31 TCGA-FD-A43N-01 1 156640882 156640882 C T NES Missense_Mutation p.G1033E 0.11 tolerated(0.32) benign(0.068) TCGA-FD-A43N-01 1 16255498 16255498 G A SPEN Silent p.Q921Q 0.06 TCGA-FD-A43N-01 1 169773374 169773374 G A C1orf112 Missense_Mutation p.M157I 0.37 tolerated(0.39) possibly_damaging(0.805) TCGA-FD-A43N-01 1 178820444 178820444 G A ANGPTL1 Silent p.C432C 0.12 TCGA-FD-A43N-01 1 182555353 182555353 C T RNASEL Missense_Mutation p.A197T 0.10 tolerated(0.26) possibly_damaging(0.724) TCGA-FD-A43N-01 1 201054595 201054595 G A CACNA1S Silent p.G373G 0.41 TCGA-FD-A43N-01 1 201984377 201984377 C T ELF3 Missense_Mutation p.R348W 0.27 deleterious(0) probably_damaging(0.998) TCGA-FD-A43N-01 1 202864796 202864796 C T KLHL12 Missense_Mutation p.R330Q 0.11 deleterious(0.04) possibly_damaging(0.755) TCGA-FD-A43N-01 1 202935085 202935085 C A CYB5R1 Missense_Mutation p.S92I 0.22 deleterious(0.05) possibly_damaging(0.73) TCGA-FD-A43N-01 1 204433165 204433165 A T PIK3C2B Missense_Mutation p.C429S 0.41 deleterious(0.01) possibly_damaging(0.729) TCGA-FD-A43N-01 1 212799048 212799048 G C FAM71A Missense_Mutation p.E277Q 0.26 tolerated(0.56) benign(0.01) TCGA-FD-A43N-01 1 212799571 212799571 G A FAM71A Missense_Mutation p.G451E 0.28 tolerated(0.05) possibly_damaging(0.87) TCGA-FD-A43N-01 1 226032929 226032929 T C EPHX1 Missense_Mutation p.Y417H 0.17 deleterious(0.03) benign(0.078) TCGA-FD-A43N-01 1 23735166 23735166 G A TCEA3 Missense_Mutation p.S145L 0.15 deleterious(0.04) benign(0.003) TCGA-FD-A43N-01 1 240371091 240371091 C T FMN2 Silent p.P993P 0.14 TCGA-FD-A43N-01 1 247978482 247978482 C A OR14A16 Missense_Mutation p.A184S 0.29 tolerated(0.28) benign(0.048) TCGA-FD-A43N-01 1 27100816 27100821 TTAGAA - ARID1A Splice_Site p.X1368_splice 0.22 TCGA-FD-A43N-01 1 27101375 27101375 C - ARID1A Frame_Shift_Del p.P1554Hfs*11 0.35 TCGA-FD-A43N-01 1 36026871 36026871 G T NCDN Silent p.G373G 0.12 TCGA-FD-A43N-01 1 38272949 38272949 G C C1orf122 5'Flank 0.17 TCGA-FD-A43N-01 1 42047275 42047275 C A HIVEP3 Missense_Mutation p.G1065V 0.17 possibly_damaging(0.71) TCGA-FD-A43N-01 1 42047754 42047754 C G HIVEP3 Missense_Mutation p.K905N 0.22 probably_damaging(0.997) TCGA-FD-A43N-01 1 42047774 42047774 C T HIVEP3 Missense_Mutation p.E899K 0.21 probably_damaging(0.993) TCGA-FD-A43N-01 1 43825271 43825271 G T CDC20 Nonsense_Mutation p.E98* 0.15 TCGA-FD-A43N-01 1 54291557 54291557 G A NDC1 Silent p.L170L 0.28 TCGA-FD-A43N-01 1 94982739 94982739 G C ABCD3 3'UTR 0.13 TCGA-FD-A43N-01 20 3052875 3052875 G A OXT Silent p.A91A 0.19 TCGA-FD-A43N-01 20 334238 334238 C T NRSN2 Nonsense_Mutation p.Q192* 0.06 TCGA-FD-A43N-01 20 43726506 43726506 G C KCNS1 Missense_Mutation p.H303D 0.09 tolerated(0.71) probably_damaging(0.989) TCGA-FD-A43N-01 20 43851642 43851642 C G SEMG2 Missense_Mutation p.Q457E 0.40 tolerated(0.09) benign(0.149) TCGA-FD-A43N-01 20 47887208 47887208 C T ZNFX1 Missense_Mutation p.V381I 0.12 tolerated(0.25) benign(0.089) TCGA-FD-A43N-01 21 19651287 19651287 A G TMPRSS15 Missense_Mutation p.Y920H 0.36 tolerated(0.53) benign(0.002) TCGA-FD-A43N-01 22 30186505 30186505 C G ASCC2 Silent p.L685L 0.08 TCGA-FD-A43N-01 22 36919946 36919946 C T EIF3D Missense_Mutation p.E130K 0.14 tolerated(0.21) benign(0.099) TCGA-FD-A43N-01 2 128880800 128880800 G T UGGT1 Nonsense_Mutation p.E372* 0.20 TCGA-FD-A43N-01 2 177036356 177036356 A G HOXD3 Missense_Mutation p.Y218C 0.07 deleterious(0) possibly_damaging(0.802) TCGA-FD-A43N-01 2 179455906 179455906 C A TTN Silent p.L20182L 0.20 TCGA-FD-A43N-01 2 179600354 179600354 T C TTN Missense_Mutation p.D4940G 0.16 TCGA-FD-A43N-01 2 207175479 207175479 G A ZDBF2 Missense_Mutation p.R2076H 0.46 tolerated(0.43) benign(0) TCGA-FD-A43N-01 2 213886821 213886821 C - IKZF2 Frame_Shift_Del p.R203Qfs*32 0.33 TCGA-FD-A43N-01 2 65298651 65298651 A G CEP68 Missense_Mutation p.T141A 0.40 tolerated(0.55) benign(0.009) TCGA-FD-A43N-01 2 84811350 84811350 G C DNAH6 Silent p.V819V 0.35 TCGA-FD-A43N-01 2 96040071 96040071 C T KCNIP3 Missense_Mutation p.S70F 0.27 deleterious(0) probably_damaging(0.971) TCGA-FD-A43N-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.12 tolerated(0.11) possibly_damaging(0.529) TCGA-FD-A43N-01 3 18393545 18393545 G A SATB1 Missense_Mutation p.A573V 0.10 deleterious_low_confidence(0.01) benign(0.361) TCGA-FD-A43N-01 3 21606127 21606127 A G ZNF385D Missense_Mutation p.L72P 0.12 tolerated(0.36) benign(0.092) TCGA-FD-A43N-01 3 33038574 33038574 G A GLB1 Missense_Mutation p.P666L 0.33 deleterious_low_confidence(0.03) benign(0.009) TCGA-FD-A43N-01 3 33614798 33614798 C T CLASP2 Missense_Mutation p.D844N 0.27 deleterious(0) probably_damaging(0.996) TCGA-FD-A43N-01 3 37365709 37365709 C A GOLGA4 Missense_Mutation p.H800N 0.40 benign(0.098) TCGA-FD-A43N-01 3 40469026 40469026 A G ENTPD3 3'UTR 0.22 TCGA-FD-A43N-01 3 46014656 46014657 AG - FYCO1 Frame_Shift_Del p.Y155* 0.27 TCGA-FD-A43N-01 3 50334066 50334066 G A NAT6 Missense_Mutation p.R299C 0.19 tolerated(0.35) benign(0.002) TCGA-FD-A43N-01 3 52255970 52255970 C G TLR9 Missense_Mutation p.V942L 0.38 tolerated(0.07) possibly_damaging(0.508) TCGA-FD-A43N-01 3 52836750 52836750 G A ITIH3 Missense_Mutation p.R546Q 0.25 tolerated(1) benign(0.001) TCGA-FD-A43N-01 3 57291024 57291024 G A APPL1 Missense_Mutation p.V398I 0.36 tolerated(0.05) benign(0.024) TCGA-FD-A43N-01 3 64085406 64085406 C T PRICKLE2 Missense_Mutation p.G619E 0.12 tolerated(1) benign(0.051) TCGA-FD-A43N-01 3 66449391 66449391 C T LRIG1 Intron 0.23 TCGA-FD-A43N-01 3 75472066 75472066 G C FAM86DP RNA 0.26 TCGA-FD-A43N-01 3 81627123 81627123 C T GBE1 Missense_Mutation p.R524Q 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A43N-01 4 108552965 108552965 C A PAPSS1 Missense_Mutation p.V520F 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A43N-01 4 126412578 126412578 G T FAT4 Missense_Mutation p.M4867I 0.19 benign(0.005) TCGA-FD-A43N-01 4 165961555 165961555 G A TRIM60 Missense_Mutation p.D111N 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-FD-A43N-01 4 174235265 174235265 G T GALNT7 Nonsense_Mutation p.E516* 0.31 TCGA-FD-A43N-01 4 174235277 174235277 G T GALNT7 Missense_Mutation p.D520Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-FD-A43N-01 4 20598181 20598181 A G SLIT2 Missense_Mutation p.K1155R 0.30 tolerated(0.82) benign(0.015) TCGA-FD-A43N-01 4 24529573 24529573 G C DHX15 Missense_Mutation p.Q788E 0.08 tolerated(0.66) benign(0) TCGA-FD-A43N-01 4 40356589 40356589 A T CHRNA9 3'UTR 0.27 TCGA-FD-A43N-01 4 74019789 74019789 C G ANKRD17 Missense_Mutation p.D348H 0.13 probably_damaging(0.995) TCGA-FD-A43N-01 4 88986632 88986632 G A PKD2 Missense_Mutation p.R742Q 0.06 tolerated(0.1) possibly_damaging(0.899) TCGA-FD-A43N-01 4 947122 947133 TCTCTCTTCTTT - TMEM175 In_Frame_Del p.S203_F206del 0.10 TCGA-FD-A43N-01 5 133747459 133747459 G - CDKN2AIPNL Frame_Shift_Del p.Y30Tfs*48 0.18 TCGA-FD-A43N-01 5 134074314 134074314 G C CAMLG Missense_Mutation p.E2Q 0.17 tolerated_low_confidence(0.07) benign(0.329) TCGA-FD-A43N-01 5 140186931 140186931 A G PCDHA4 Silent p.G53G 0.11 TCGA-FD-A43N-01 5 140241112 140241112 G A AC005609.1 3'UTR 0.48 TCGA-FD-A43N-01 5 140255631 140255631 C - PCDHA12 Frame_Shift_Del p.P192Lfs*3 0.23 TCGA-FD-A43N-01 5 141248302 141248302 G - PCDH1 Frame_Shift_Del p.Y246Mfs*50 0.20 TCGA-FD-A43N-01 5 145522979 145522979 T A LARS Missense_Mutation p.I625F 0.28 deleterious(0) possibly_damaging(0.619) TCGA-FD-A43N-01 5 148930436 148930436 A T CSNK1A1 Missense_Mutation p.I31N 0.44 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-FD-A43N-01 5 149607850 149607850 C T CAMK2A Splice_Site p.X381_splice 0.09 TCGA-FD-A43N-01 5 23527470 23527470 G A PRDM9 Missense_Mutation p.R758H 0.48 deleterious(0.01) possibly_damaging(0.648) TCGA-FD-A43N-01 5 36970975 36970975 C T NIPBL Intron 0.31 TCGA-FD-A43N-01 5 43454014 43454014 G C C5orf28 Missense_Mutation p.L20V 0.13 tolerated(0.51) benign(0.014) TCGA-FD-A43N-01 5 78379499 78379499 G C BHMT2 Missense_Mutation p.R277T 0.14 deleterious(0.03) probably_damaging(0.975) TCGA-FD-A43N-01 5 86690819 86690819 T C CCNH Intron 0.28 TCGA-FD-A43N-01 5 89757257 89757257 G A MBLAC2 Silent p.D189D 0.27 TCGA-FD-A43N-01 6 100964128 100964128 A C ASCC3 Missense_Mutation p.H2001Q 0.13 tolerated(0.6) benign(0.003) TCGA-FD-A43N-01 6 114178958 114178958 G C MARCKS Missense_Mutation p.E13Q 0.36 deleterious(0.01) possibly_damaging(0.482) TCGA-FD-A43N-01 6 139094892 139094892 C G CCDC28A Silent p.L27L 0.30 TCGA-FD-A43N-01 6 25727310 25727310 G A HIST1H2BA Silent p.S58S 0.13 TCGA-FD-A43N-01 6 26156926 26156926 G C HIST1H1E Missense_Mutation p.G103A 0.09 deleterious(0) probably_damaging(0.999) TCGA-FD-A43N-01 6 2893690 2893690 C G SERPINB9 Silent p.P174P 0.06 TCGA-FD-A43N-01 6 2893699 2893699 C G SERPINB9 Missense_Mutation p.W171C 0.06 deleterious(0.01) probably_damaging(1) TCGA-FD-A43N-01 6 30617708 30617708 C T C6orf136 Missense_Mutation p.S330F 0.14 deleterious(0) possibly_damaging(0.648) TCGA-FD-A43N-01 6 30618839 30618839 G C C6orf136 Missense_Mutation p.E362D 0.11 tolerated(0.09) benign(0.364) TCGA-FD-A43N-01 6 30690399 30690399 C T TUBB Missense_Mutation p.S48F 0.12 deleterious_low_confidence(0) possibly_damaging(0.722) TCGA-FD-A43N-01 6 31695394 31695394 G A DDAH2 Missense_Mutation p.L223F 0.37 deleterious(0.02) possibly_damaging(0.744) TCGA-FD-A43N-01 6 38941501 38941501 C T DNAH8 Missense_Mutation p.T3980M 0.43 benign(0.154) TCGA-FD-A43N-01 6 52329810 52329810 A G EFHC1 Missense_Mutation p.Y345C 0.34 tolerated(0.1) possibly_damaging(0.606) TCGA-FD-A43N-01 6 56418362 56418362 C G DST Missense_Mutation p.K2453N 0.25 possibly_damaging(0.804) TCGA-FD-A43N-01 6 7580191 7580191 C G DSP Silent p.L1256L 0.20 TCGA-FD-A43N-01 7 100334565 100334565 C T ZAN Silent p.G129G 0.19 TCGA-FD-A43N-01 7 101256983 101256983 C G MYL10 Missense_Mutation p.E181Q 0.28 tolerated(0.21) benign(0.163) TCGA-FD-A43N-01 7 106508381 106508381 G C PIK3CG Missense_Mutation p.W125C 0.38 deleterious(0) probably_damaging(0.999) TCGA-FD-A43N-01 7 1131484 1131484 C T GPER1 Silent p.T40T 0.29 TCGA-FD-A43N-01 7 113519687 113519687 C T PPP1R3A Missense_Mutation p.R487K 0.05 tolerated(0.98) benign(0.01) TCGA-FD-A43N-01 7 121682795 121682795 G A PTPRZ1 Missense_Mutation p.E1979K 0.07 deleterious(0) possibly_damaging(0.891) TCGA-FD-A43N-01 7 122261650 122261650 G A CADPS2 Missense_Mutation p.P330L 0.13 deleterious(0.04) benign(0.158) TCGA-FD-A43N-01 7 127235518 127235518 G A FSCN3 Missense_Mutation p.R101Q 0.26 tolerated(0.35) probably_damaging(0.91) TCGA-FD-A43N-01 7 127732194 127732194 A G SND1 3'UTR 0.10 TCGA-FD-A43N-01 7 142099702 142099702 T G TRBV7-8 Silent p.R34R 0.09 TCGA-FD-A43N-01 7 150163828 150163828 C G GIMAP8 Silent p.L14L 0.30 TCGA-FD-A43N-01 7 157023793 157023793 G T UBE3C Silent p.R751R 0.36 TCGA-FD-A43N-01 7 20825272 20825272 G A SP8 Missense_Mutation p.S55L 0.09 tolerated(0.45) benign(0.013) TCGA-FD-A43N-01 7 26240315 26240315 G C HNRNPA2B1 5'UTR 0.48 TCGA-FD-A43N-01 7 35284638 35284638 C T TBX20 Missense_Mutation p.G193S 0.06 deleterious(0) probably_damaging(0.942) TCGA-FD-A43N-01 7 37253046 37253046 T G ELMO1 Missense_Mutation p.Q283P 0.07 tolerated(0.22) benign(0.001) TCGA-FD-A43N-01 7 3990655 3990655 A T SDK1 Silent p.I316I 0.11 TCGA-FD-A43N-01 7 45108134 45108134 C G CCM2 Missense_Mutation p.P210A 0.32 tolerated(0.06) possibly_damaging(0.769) TCGA-FD-A43N-01 8 133008705 133008705 G A EFR3A Silent p.Q706Q 0.19 TCGA-FD-A43N-01 8 32505415 32505415 C T NRG1 Intron 0.16 TCGA-FD-A43N-01 8 37693174 37693174 C T GPR124 Missense_Mutation p.L646F 0.59 deleterious(0.01) probably_damaging(0.98) TCGA-FD-A43N-01 8 91013751 91013751 C T DECR1 Silent p.L11L 0.34 TCGA-FD-A43N-01 8 95789941 95789941 G T DPY19L4 Missense_Mutation p.G501V 0.15 deleterious(0) possibly_damaging(0.903) TCGA-FD-A43N-01 9 113192271 113192271 A T SVEP1 Silent p.G1848G 0.43 TCGA-FD-A43N-01 9 131339209 131339209 G T SPTAN1 Silent p.G253G 0.37 TCGA-FD-A43N-01 9 133946902 133946902 C T LAMC3 Missense_Mutation p.T1034M 0.24 tolerated(1) benign(0) TCGA-FD-A43N-01 9 135946549 135946549 G A CEL Missense_Mutation p.D557N 0.08 tolerated(0.47) benign(0.024) TCGA-FD-A43N-01 9 71007348 71007348 C T PGM5 Silent p.R334R 0.39 TCGA-FD-A43N-01 9 79117796 79117796 A T GCNT1 Missense_Mutation p.M167L 0.28 tolerated(0.07) benign(0.002) TCGA-FD-A43N-01 X 13338067 13338067 G A ATXN3L 5'UTR 0.21 TCGA-FD-A43N-01 X 154090123 154090123 C A F8 Missense_Mutation p.G2198V 0.76 deleterious(0) probably_damaging(1) TCGA-FD-A43N-01 X 32407733 32407733 T G DMD Missense_Mutation p.E1468A 0.08 possibly_damaging(0.828) TCGA-FD-A43N-01 X 34961078 34961078 G C FAM47B Missense_Mutation p.D44H 0.42 tolerated(0.09) probably_damaging(0.999) TCGA-FD-A43N-01 X 34961468 34961468 G A FAM47B Missense_Mutation p.E174K 0.23 tolerated(1) benign(0.017) TCGA-FD-A43P-01 10 101716853 101716853 G C DNMBP Silent p.L126L 0.12 TCGA-FD-A43P-01 10 102304757 102304757 G C HIF1AN Missense_Mutation p.Q209H 0.17 deleterious(0.03) possibly_damaging(0.883) TCGA-FD-A43P-01 10 115374002 115374002 C T NRAP Silent p.R1080R 0.17 TCGA-FD-A43P-01 10 118434498 118434498 C A HSPA12A Missense_Mutation p.D608Y 0.18 deleterious(0) benign(0.313) TCGA-FD-A43P-01 10 131959123 131959123 C T GLRX3 Nonsense_Mutation p.R114* 0.27 TCGA-FD-A43P-01 10 28971202 28971202 G A BAMBI Missense_Mutation p.V219I 0.22 tolerated_low_confidence(0.1) benign(0.42) TCGA-FD-A43P-01 10 32306165 32306165 A - KIF5B Frame_Shift_Del p.R890Vfs*10 0.11 TCGA-FD-A43P-01 10 38241886 38241886 C G ZNF25 Missense_Mutation p.K180N 0.13 deleterious(0.03) benign(0.002) TCGA-FD-A43P-01 10 70204688 70204688 G C DNA2 Missense_Mutation p.L490V 0.14 tolerated(0.1) possibly_damaging(0.596) TCGA-FD-A43P-01 10 70748747 70748747 G T KIAA1279 Silent p.A53A 0.17 TCGA-FD-A43P-01 10 75135976 75135976 C G ANXA7 Splice_Site p.X449_splice 0.18 TCGA-FD-A43P-01 10 8115824 8115824 G C GATA3 Silent p.S391S 0.06 TCGA-FD-A43P-01 10 88659632 88659632 C - BMPR1A Frame_Shift_Del p.P140Lfs*4 0.08 TCGA-FD-A43P-01 10 90427362 90427362 G A LIPF Missense_Mutation p.E58K 0.20 tolerated(0.08) benign(0.003) TCGA-FD-A43P-01 10 90438289 90438289 G T LIPF Missense_Mutation p.D360Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 10 96106202 96106202 G C NOC3L Missense_Mutation p.L457V 0.12 deleterious(0.01) possibly_damaging(0.826) TCGA-FD-A43P-01 10 98336516 98336516 T C TM9SF3 Missense_Mutation p.Y58C 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 11 108196125 108196125 G T ATM Nonsense_Mutation p.E2221* 0.32 TCGA-FD-A43P-01 11 113935159 113935159 C T ZBTB16 Silent p.F379F 0.22 TCGA-FD-A43P-01 11 119005091 119005091 C G HINFP Silent p.V479V 0.08 TCGA-FD-A43P-01 11 119005157 119005157 C G HINFP Missense_Mutation p.I501M 0.11 deleterious_low_confidence(0.03) benign(0.033) TCGA-FD-A43P-01 11 119005245 119005245 G A HINFP 3'UTR 0.25 TCGA-FD-A43P-01 11 120008672 120008672 G A TRIM29 Missense_Mutation p.S23L 0.14 tolerated_low_confidence(0.28) benign(0) TCGA-FD-A43P-01 11 124501252 124501252 G A TBRG1 Missense_Mutation p.M343I 0.25 tolerated(0.56) benign(0) TCGA-FD-A43P-01 11 1269021 1269021 C T MUC5B Silent p.S3637S 0.12 TCGA-FD-A43P-01 11 17098723 17098723 G T RPS13 Nonsense_Mutation p.S48* 0.18 TCGA-FD-A43P-01 11 19258867 19258867 C G E2F8 Missense_Mutation p.E149Q 0.15 deleterious(0) probably_damaging(0.979) TCGA-FD-A43P-01 11 34673324 34673324 C T EHF Silent p.S194S 0.14 TCGA-FD-A43P-01 11 34991683 34991683 C T PDHX Intron 0.23 TCGA-FD-A43P-01 11 47444224 47444224 C G PSMC3 Missense_Mutation p.G262A 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 11 55110920 55110920 G T OR4A16 Missense_Mutation p.D82Y 0.15 deleterious_low_confidence(0) benign(0.347) TCGA-FD-A43P-01 11 55890584 55890584 T C OR8H3 Silent p.L246L 0.23 TCGA-FD-A43P-01 11 56380301 56380301 G T OR5M1 Missense_Mutation p.F226L 0.13 tolerated(1) benign(0) TCGA-FD-A43P-01 11 61897728 61897728 C T INCENP Silent p.P243P 0.28 TCGA-FD-A43P-01 11 62159067 62159067 G A ASRGL1 Silent p.V228V 0.20 TCGA-FD-A43P-01 11 62491786 62491786 G A HNRNPUL2 Silent p.F217F 0.26 TCGA-FD-A43P-01 11 63177281 63177281 G C SLC22A9 Missense_Mutation p.D537H 0.25 tolerated(0.36) benign(0.014) TCGA-FD-A43P-01 11 64023030 64023030 C T PLCB3 Missense_Mutation p.S180L 0.17 deleterious(0.04) possibly_damaging(0.855) TCGA-FD-A43P-01 11 64108139 64108139 G C CCDC88B Missense_Mutation p.E41Q 0.19 deleterious(0.01) benign(0.088) TCGA-FD-A43P-01 11 64109194 64109194 G C CCDC88B Missense_Mutation p.E219Q 0.16 tolerated(0.12) probably_damaging(1) TCGA-FD-A43P-01 11 64111763 64111763 G C CCDC88B Missense_Mutation p.E584Q 0.13 tolerated_low_confidence(0.06) benign(0.007) TCGA-FD-A43P-01 11 6413073 6413073 G C SMPD1 Missense_Mutation p.E260Q 0.11 tolerated(0.08) benign(0.192) TCGA-FD-A43P-01 11 64520630 64520630 T C PYGM Missense_Mutation p.H478R 0.17 deleterious(0.04) benign(0.217) TCGA-FD-A43P-01 11 64822077 64822077 C T NAALADL1 Missense_Mutation p.R246Q 0.40 deleterious(0) probably_damaging(0.992) TCGA-FD-A43P-01 11 65620816 65620816 A C SNX32 3'UTR 0.13 TCGA-FD-A43P-01 11 71146707 71146707 G C DHCR7 Missense_Mutation p.S381C 0.10 deleterious(0.01) possibly_damaging(0.841) TCGA-FD-A43P-01 11 74429798 74429798 G T CHRDL2 Silent p.G54G 0.54 TCGA-FD-A43P-01 11 83673942 83673942 G A DLG2 Silent p.D442D 0.24 TCGA-FD-A43P-01 11 88242642 88242642 C G GRM5 Missense_Mutation p.Q919H 0.44 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-FD-A43P-01 11 88780523 88780523 G C GRM5 Nonsense_Mutation p.S173* 0.22 TCGA-FD-A43P-01 11 9187502 9187502 C T DENND5A Missense_Mutation p.E722K 0.19 tolerated(0.07) possibly_damaging(0.829) TCGA-FD-A43P-01 11 9191466 9191466 C T DENND5A Nonsense_Mutation p.W696* 0.19 TCGA-FD-A43P-01 12 104171814 104171814 G A NT5DC3 Silent p.F480F 0.27 TCGA-FD-A43P-01 12 10954386 10954386 C G TAS2R7 Missense_Mutation p.E262Q 0.12 tolerated(0.33) probably_damaging(0.972) TCGA-FD-A43P-01 12 10959262 10959262 G C TAS2R8 Missense_Mutation p.F106L 0.16 deleterious(0) probably_damaging(0.99) TCGA-FD-A43P-01 12 110974889 110974889 C G PPTC7 Missense_Mutation p.D290H 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 12 11183611 11183611 G C TAS2R31 Silent p.L108L 0.24 TCGA-FD-A43P-01 12 133732866 133732866 G C ZNF10 Missense_Mutation p.G345A 0.25 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 12 14943458 14943458 C T WBP11 Missense_Mutation p.G414E 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-FD-A43P-01 12 15668439 15668439 C G PTPRO Nonsense_Mutation p.S491* 0.26 TCGA-FD-A43P-01 12 15704577 15704577 C G PTPRO Missense_Mutation p.L844V 0.14 deleterious(0.04) probably_damaging(0.967) TCGA-FD-A43P-01 12 1953628 1953628 G T CACNA2D4 Missense_Mutation p.Q804K 0.37 tolerated(0.06) benign(0.101) TCGA-FD-A43P-01 12 20870080 20870080 G T SLCO1C1 Missense_Mutation p.V231F 0.12 tolerated(0.19) benign(0.117) TCGA-FD-A43P-01 12 21636387 21636387 T A RECQL Missense_Mutation p.Y208F 0.18 tolerated(0.14) possibly_damaging(0.75) TCGA-FD-A43P-01 12 23887624 23887624 C T SOX5 Silent p.Q268Q 0.15 TCGA-FD-A43P-01 12 27089646 27089646 C G ASUN Missense_Mutation p.D31H 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 12 3923240 3923240 C G PARP11 Missense_Mutation p.W221C 0.15 tolerated(0.2) benign(0.112) TCGA-FD-A43P-01 12 50037230 50037230 G A FMNL3 3'UTR 0.23 TCGA-FD-A43P-01 12 51492568 51492568 G A TFCP2 Silent p.I470I 0.37 TCGA-FD-A43P-01 12 53777305 53777305 C G SP1 Missense_Mutation p.S525C 0.15 tolerated(0.05) possibly_damaging(0.869) TCGA-FD-A43P-01 12 56510498 56510498 G T RPL41 5'UTR 0.27 TCGA-FD-A43P-01 12 58121610 58121610 C T AGAP2-AS1 3'UTR 0.21 TCGA-FD-A43P-01 12 6979667 6979667 C T TPI1 3'UTR 0.12 TCGA-FD-A43P-01 12 72289773 72289773 C T TBC1D15 Missense_Mutation p.S318L 0.19 deleterious(0) benign(0.004) TCGA-FD-A43P-01 13 113510380 113510380 C T ATP11A Missense_Mutation p.A800V 0.21 deleterious(0) probably_damaging(0.948) TCGA-FD-A43P-01 13 113514725 113514725 A G ATP11A Missense_Mutation p.Y951C 0.51 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 13 21751095 21751095 G T MRP63 Missense_Mutation p.G14C 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 13 22033241 22033241 A G ZDHHC20 Missense_Mutation p.F24L 0.15 tolerated(1) benign(0.001) TCGA-FD-A43P-01 13 26151212 26151212 G A ATP8A2 Missense_Mutation p.R573K 0.12 deleterious(0.02) benign(0.068) TCGA-FD-A43P-01 13 30098345 30098345 G A SLC7A1 Silent p.F250F 0.11 TCGA-FD-A43P-01 13 32812068 32812068 C T FRY Silent p.F2121F 0.04 TCGA-FD-A43P-01 13 32911065 32911065 G C BRCA2 Missense_Mutation p.R858T 0.08 tolerated(1) benign(0.001) TCGA-FD-A43P-01 13 32972428 32972428 G C BRCA2 Missense_Mutation p.D3260H 0.05 deleterious(0.01) probably_damaging(0.913) TCGA-FD-A43P-01 13 37586428 37586428 C G SUPT20H Missense_Mutation p.E667Q 0.16 tolerated(0.49) benign(0.003) TCGA-FD-A43P-01 13 41345136 41345136 G T MRPS31 Nonsense_Mutation p.S46* 0.21 TCGA-FD-A43P-01 13 48941648 48941648 C T RB1 Nonsense_Mutation p.R320* 0.35 TCGA-FD-A43P-01 13 73467995 73467995 G C PIBF1 Missense_Mutation p.E466Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-FD-A43P-01 13 78492255 78492255 C T EDNRB Missense_Mutation p.V242I 0.31 tolerated(1) benign(0.007) TCGA-FD-A43P-01 14 100123334 100123334 T C HHIPL1 Intron 0.36 TCGA-FD-A43P-01 14 101488425 101488425 T C MIR379 RNA 0.45 TCGA-FD-A43P-01 14 102478670 102478670 G C DYNC1H1 Missense_Mutation p.G2293R 0.15 probably_damaging(0.998) TCGA-FD-A43P-01 14 20216306 20216306 C A OR4Q3 Silent p.T240T 0.05 TCGA-FD-A43P-01 14 20444034 20444034 T C OR4K15 Silent p.D119D 0.13 TCGA-FD-A43P-01 14 21058962 21058962 G A RNASE12 5'UTR 0.20 TCGA-FD-A43P-01 14 22690353 22690353 C G TRAV35 Missense_Mutation p.I104M 0.27 deleterious(0.04) benign(0.233) TCGA-FD-A43P-01 14 22970610 22970610 C T TRAJ39 Silent p.L9L 0.34 TCGA-FD-A43P-01 14 26917997 26917997 C G NOVA1 Missense_Mutation p.R231P 0.17 deleterious(0.02) unknown(0) TCGA-FD-A43P-01 14 64460569 64460569 C G SYNE2 Missense_Mutation p.S888C 0.16 possibly_damaging(0.632) TCGA-FD-A43P-01 14 65216179 65216179 A T SPTB Missense_Mutation p.S2278T 0.33 tolerated(0.68) benign(0.014) TCGA-FD-A43P-01 14 68157131 68157131 G A RDH11 Silent p.F154F 0.41 TCGA-FD-A43P-01 14 71199718 71199718 C A MAP3K9 Nonsense_Mutation p.E804* 0.22 TCGA-FD-A43P-01 14 74325522 74325522 T A PTGR2 5'UTR 0.30 TCGA-FD-A43P-01 14 97022562 97022562 C A PAPOLA Missense_Mutation p.P606T 0.17 tolerated(0.27) benign(0.115) TCGA-FD-A43P-01 15 102291769 102291769 C G DNM1P47 RNA 0.16 TCGA-FD-A43P-01 15 43571383 43571383 C T TGM7 Missense_Mutation p.E591K 0.19 tolerated(1) benign(0.008) TCGA-FD-A43P-01 15 43571389 43571389 C T TGM7 Missense_Mutation p.E589K 0.18 tolerated(0.45) benign(0.004) TCGA-FD-A43P-01 15 45409450 45409450 C A DUOXA2 Missense_Mutation p.S239Y 0.29 deleterious(0.01) possibly_damaging(0.873) TCGA-FD-A43P-01 15 49061176 49061176 G C CEP152 Missense_Mutation p.Q629E 0.20 tolerated(0.33) benign(0.093) TCGA-FD-A43P-01 15 50212604 50212604 A C ATP8B4 Missense_Mutation p.F588V 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A43P-01 15 59931280 59931280 C G GTF2A2 3'UTR 0.20 TCGA-FD-A43P-01 15 62172818 62172818 G C VPS13C Missense_Mutation p.S3331C 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 15 70979931 70979931 G A UACA Nonsense_Mutation p.Q184* 0.23 TCGA-FD-A43P-01 15 75119166 75119166 G T CPLX3 Missense_Mutation p.R41L 0.15 deleterious(0) benign(0.098) TCGA-FD-A43P-01 15 75968949 75968949 C T CSPG4 Missense_Mutation p.D1971N 0.09 tolerated(0.55) benign(0.042) TCGA-FD-A43P-01 15 77473361 77473361 C T PEAK1 Missense_Mutation p.R303K 0.22 deleterious(0) probably_damaging(0.99) TCGA-FD-A43P-01 15 78882920 78882920 C T CHRNA5 Missense_Mutation p.A396V 0.27 tolerated(0.11) possibly_damaging(0.819) TCGA-FD-A43P-01 15 78894561 78894561 G C CHRNA3 Silent p.L141L 0.19 TCGA-FD-A43P-01 15 89760482 89760482 G A RLBP1 Missense_Mutation p.A72V 0.11 tolerated(0.24) benign(0.022) TCGA-FD-A43P-01 15 90334242 90334242 T C ANPEP Missense_Mutation p.I871V 0.12 tolerated(1) benign(0.004) TCGA-FD-A43P-01 16 19522217 19522217 C T GDE1 Missense_Mutation p.E163K 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A43P-01 16 24820728 24820728 C G TNRC6A Nonsense_Mutation p.S1533* 0.30 TCGA-FD-A43P-01 16 28913591 28913591 C T ATP2A1 Missense_Mutation p.P803L 0.19 deleterious(0) benign(0.09) TCGA-FD-A43P-01 16 28997508 28997508 C G LAT Silent p.P108P 0.17 TCGA-FD-A43P-01 16 29818739 29818739 C A MAZ Silent p.I211I 0.29 TCGA-FD-A43P-01 16 30198213 30198213 G A CORO1A Missense_Mutation p.R133H 0.13 deleterious(0) probably_damaging(0.927) TCGA-FD-A43P-01 16 30198259 30198259 C T CORO1A Silent p.L148L 0.14 TCGA-FD-A43P-01 16 30365287 30365287 C T CD2BP2 Missense_Mutation p.D104N 0.25 deleterious(0.01) benign(0.037) TCGA-FD-A43P-01 16 30376855 30376855 G A TBC1D10B Silent p.F339F 0.22 TCGA-FD-A43P-01 16 30390351 30390351 C G SEPT1 Missense_Mutation p.R310P 0.26 possibly_damaging(0.813) TCGA-FD-A43P-01 16 30767796 30767796 C T PHKG2 Silent p.F252F 0.18 TCGA-FD-A43P-01 16 335329 335329 C T PDIA2 Silent p.F271F 0.13 TCGA-FD-A43P-01 16 46741667 46741667 G C MYLK3 Missense_Mutation p.F803L 0.30 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 16 49671630 49671630 G A ZNF423 Missense_Mutation p.S478F 0.15 deleterious(0.03) benign(0.304) TCGA-FD-A43P-01 16 54967537 54967537 C G IRX5 Missense_Mutation p.L402V 0.17 tolerated(0.08) unknown(0) TCGA-FD-A43P-01 16 69154319 69154319 G A CHTF8 Missense_Mutation p.R5W 0.25 tolerated_low_confidence(0.09) unknown(0) TCGA-FD-A43P-01 16 69154382 69154382 G T CHTF8 Silent p.I104I 0.24 TCGA-FD-A43P-01 16 71949582 71949582 G C IST1 Silent p.V26V 0.15 TCGA-FD-A43P-01 16 77375605 77375605 C A ADAMTS18 Missense_Mutation p.S569I 0.13 deleterious(0) benign(0.434) TCGA-FD-A43P-01 16 81077528 81077528 G C ATMIN Missense_Mutation p.Q475H 0.10 deleterious(0) probably_damaging(0.993) TCGA-FD-A43P-01 16 81077750 81077750 G A ATMIN Silent p.Q549Q 0.15 TCGA-FD-A43P-01 16 84065560 84065560 G A SLC38A8 Silent p.L182L 0.09 TCGA-FD-A43P-01 16 87764233 87764233 G A KLHDC4 Missense_Mutation p.S175L 0.15 deleterious(0) possibly_damaging(0.754) TCGA-FD-A43P-01 16 89986437 89986437 C G MC1R Missense_Mutation p.F257L 0.16 tolerated(0.05) benign(0.181) TCGA-FD-A43P-01 17 10438445 10438445 G A MYH2 Missense_Mutation p.R709C 0.20 deleterious(0) probably_damaging(0.954) TCGA-FD-A43P-01 17 10600752 10600752 G T SCO1 Missense_Mutation p.R25S 0.19 tolerated_low_confidence(0.08) benign(0.004) TCGA-FD-A43P-01 17 15516018 15516018 C T RP11-385D13.1 Silent p.T683T 0.22 TCGA-FD-A43P-01 17 15995297 15995297 C T NCOR1 Missense_Mutation p.A966T 0.38 probably_damaging(0.995) TCGA-FD-A43P-01 17 1634506 1634506 G A WDR81 Missense_Mutation p.E1371K 0.15 deleterious(0.03) possibly_damaging(0.842) TCGA-FD-A43P-01 17 21826335 21826335 C T FAM27L RNA 0.24 TCGA-FD-A43P-01 17 28659140 28659140 C G TMIGD1 Missense_Mutation p.K4N 0.06 tolerated_low_confidence(0.06) benign(0.004) TCGA-FD-A43P-01 17 28706544 28706544 C G CPD Silent p.L182L 0.11 TCGA-FD-A43P-01 17 29119481 29119481 G A CRLF3 Silent p.F312F 0.08 TCGA-FD-A43P-01 17 3195490 3195490 G A OR3A1 Silent p.I129I 0.22 TCGA-FD-A43P-01 17 34077330 34077330 C T GAS2L2 Silent p.L131L 0.24 TCGA-FD-A43P-01 17 34261865 34261865 C G LYZL6 Missense_Mutation p.E128Q 0.20 tolerated(0.43) benign(0.129) TCGA-FD-A43P-01 17 38028544 38028544 C T ZPBP2 Missense_Mutation p.S143L 0.34 tolerated(0.47) possibly_damaging(0.543) TCGA-FD-A43P-01 17 38028662 38028662 C T ZPBP2 Silent p.V182V 0.40 TCGA-FD-A43P-01 17 39521041 39521041 C T KRT33B Missense_Mutation p.E363K 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-FD-A43P-01 17 44845997 44845997 G A WNT3 Nonsense_Mutation p.R253* 0.75 TCGA-FD-A43P-01 17 4789452 4789452 C G MINK1 Silent p.L244L 0.16 TCGA-FD-A43P-01 17 56603683 56603683 C A SEPT4 Intron 0.46 TCGA-FD-A43P-01 17 65186457 65186457 C T HELZ Missense_Mutation p.G191E 0.34 tolerated(0.09) probably_damaging(0.973) TCGA-FD-A43P-01 17 7358688 7358688 C T CHRNB1 Missense_Mutation p.S377F 0.49 tolerated(0.05) benign(0.009) TCGA-FD-A43P-01 17 73625074 73625074 C G RECQL5 Missense_Mutation p.G810A 0.12 tolerated(0.73) benign(0.403) TCGA-FD-A43P-01 17 7577077 7577077 C T TP53 Silent p.E287E 0.38 TCGA-FD-A43P-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.46 deleterious(0) probably_damaging(0.985) TCGA-FD-A43P-01 17 7577599 7577599 C T TP53 Missense_Mutation p.D228N 0.33 tolerated(0.07) benign(0.102) TCGA-FD-A43P-01 17 77079567 77079567 C T ENGASE Silent p.F382F 0.25 TCGA-FD-A43P-01 17 7760401 7760401 C G LSMD1 Missense_Mutation p.C114S 0.19 tolerated(0.29) benign(0.009) TCGA-FD-A43P-01 17 77807779 77807779 G T CBX4 Missense_Mutation p.F554L 0.24 deleterious(0) possibly_damaging(0.827) TCGA-FD-A43P-01 17 77808235 77808235 G A CBX4 Silent p.V402V 0.50 TCGA-FD-A43P-01 17 79205629 79205629 C T ENTHD2 Intron 0.18 TCGA-FD-A43P-01 17 79667810 79667810 C T HGS Missense_Mutation p.S701L 0.18 deleterious(0.04) benign(0.01) TCGA-FD-A43P-01 17 8170779 8170779 G C PFAS Missense_Mutation p.E1089Q 0.23 tolerated(0.18) benign(0.126) TCGA-FD-A43P-01 18 12814342 12814342 C T PTPN2 Missense_Mutation p.D240N 0.24 tolerated(0.35) benign(0.008) TCGA-FD-A43P-01 18 14479191 14479191 C G CXADRP3 RNA 0.09 TCGA-FD-A43P-01 18 21141411 21141411 C T NPC1 Missense_Mutation p.D182N 0.13 tolerated(0.25) benign(0) TCGA-FD-A43P-01 18 31325872 31325872 A G ASXL3 Silent p.P2020P 0.31 TCGA-FD-A43P-01 18 32948328 32948328 G A ZNF396 Missense_Mutation p.S330L 0.26 tolerated_low_confidence(1) possibly_damaging(0.504) TCGA-FD-A43P-01 18 39637854 39637854 C G PIK3C3 Silent p.L757L 0.29 TCGA-FD-A43P-01 18 56247665 56247665 G C ALPK2 Missense_Mutation p.P115A 0.16 deleterious(0.04) possibly_damaging(0.759) TCGA-FD-A43P-01 18 72999760 72999760 C T TSHZ1 Missense_Mutation p.R755C 0.16 deleterious(0.02) benign(0.013) TCGA-FD-A43P-01 18 77679381 77679381 G C PQLC1 Missense_Mutation p.F137L 0.24 deleterious(0) possibly_damaging(0.718) TCGA-FD-A43P-01 18 9570272 9570272 C A PPP4R1 Nonsense_Mutation p.E486* 0.19 TCGA-FD-A43P-01 19 10659604 10659604 T A ATG4D Missense_Mutation p.L287Q 0.20 tolerated(0.08) probably_damaging(0.997) TCGA-FD-A43P-01 19 11036371 11036371 C A YIPF2 Missense_Mutation p.D120Y 0.13 deleterious(0) probably_damaging(0.992) TCGA-FD-A43P-01 19 11687206 11687206 C A ACP5 Missense_Mutation p.R196M 0.27 deleterious(0.04) possibly_damaging(0.466) TCGA-FD-A43P-01 19 13428011 13428011 C G CACNA1A Missense_Mutation p.W490C 0.23 probably_damaging(0.95) TCGA-FD-A43P-01 19 14693960 14693960 C T CLEC17A 5'UTR 0.39 TCGA-FD-A43P-01 19 14863202 14863202 G A EMR2 Missense_Mutation p.S576L 0.15 tolerated(0.08) possibly_damaging(0.751) TCGA-FD-A43P-01 19 16613997 16613997 C G C19orf44 Nonsense_Mutation p.S294* 0.30 TCGA-FD-A43P-01 19 17056418 17056418 G C CPAMD8 Missense_Mutation p.H959D 0.10 tolerated(0.21) benign(0.012) TCGA-FD-A43P-01 19 18274189 18274189 G A PIK3R2 Silent p.R469R 0.28 TCGA-FD-A43P-01 19 19329770 19329770 G A NCAN Silent p.Q40Q 0.15 TCGA-FD-A43P-01 19 19745721 19745721 G A GMIP Silent p.S589S 0.23 TCGA-FD-A43P-01 19 2989613 2989613 C T TLE6 Silent p.S358S 0.10 TCGA-FD-A43P-01 19 33090938 33090938 T C ANKRD27 Missense_Mutation p.D929G 0.63 tolerated_low_confidence(0.12) possibly_damaging(0.539) TCGA-FD-A43P-01 19 34706098 34706098 C G LSM14A Nonsense_Mutation p.S203* 0.10 TCGA-FD-A43P-01 19 36584982 36584982 G A WDR62 Missense_Mutation p.G795R 0.09 tolerated(0.1) probably_damaging(0.962) TCGA-FD-A43P-01 19 37210315 37210315 G C ZNF567 Missense_Mutation p.R199T 0.12 tolerated(0.1) benign(0.103) TCGA-FD-A43P-01 19 37310167 37310167 T C ZNF790 Missense_Mutation p.H360R 0.16 deleterious(0) probably_damaging(0.994) TCGA-FD-A43P-01 19 37904467 37904467 G T ZNF569 Missense_Mutation p.Q365K 0.05 tolerated(0.32) probably_damaging(0.977) TCGA-FD-A43P-01 19 38948779 38948779 C A RYR1 Missense_Mutation p.P672T 0.07 possibly_damaging(0.636) TCGA-FD-A43P-01 19 39321966 39321966 C A ECH1 Missense_Mutation p.M81I 0.05 tolerated(0.12) benign(0.38) TCGA-FD-A43P-01 19 39443244 39443244 C A FBXO17 Intron 0.07 TCGA-FD-A43P-01 19 41201947 41201947 C G ADCK4 Missense_Mutation p.D386H 0.04 deleterious(0) probably_damaging(0.966) TCGA-FD-A43P-01 19 4177098 4177098 C T SIRT6 Missense_Mutation p.E139K 0.16 deleterious(0) probably_damaging(0.91) TCGA-FD-A43P-01 19 41782121 41782121 C G HNRNPUL1 Missense_Mutation p.T235R 0.08 deleterious(0.01) unknown(0) TCGA-FD-A43P-01 19 41932027 41932027 G C B3GNT8 Missense_Mutation p.F219L 0.10 tolerated(0.13) benign(0.389) TCGA-FD-A43P-01 19 42798179 42798179 C T CIC Missense_Mutation p.S1378F 0.08 probably_damaging(0.962) TCGA-FD-A43P-01 19 44050239 44050239 C T XRCC1 Silent p.A482A 0.65 TCGA-FD-A43P-01 19 44131815 44131815 G C CADM4 Silent p.L64L 0.10 TCGA-FD-A43P-01 19 44500277 44500277 C G ZNF155 Missense_Mutation p.P101A 0.08 tolerated(0.31) benign(0.06) TCGA-FD-A43P-01 19 44793194 44793194 G C ZNF235 Missense_Mutation p.Q132E 0.10 tolerated(0.09) benign(0.021) TCGA-FD-A43P-01 19 44892051 44892051 G A ZNF285 Missense_Mutation p.S119F 0.10 tolerated(0.22) probably_damaging(0.909) TCGA-FD-A43P-01 19 45284558 45284558 G A CBLC Missense_Mutation p.D199N 0.06 tolerated(0.06) benign(0.398) TCGA-FD-A43P-01 19 45853770 45853770 A G KLC3 Splice_Site p.X412_splice 0.14 TCGA-FD-A43P-01 19 47844899 47844899 C G C5AR2 Silent p.L281L 0.18 TCGA-FD-A43P-01 19 48878886 48878886 C G SYNGR4 Silent p.V116V 0.20 TCGA-FD-A43P-01 19 53848762 53848762 C T ZNF845 Silent p.L7L 0.13 TCGA-FD-A43P-01 19 53854796 53854796 C G ZNF845 Missense_Mutation p.H290D 0.08 deleterious(0.02) possibly_damaging(0.785) TCGA-FD-A43P-01 19 54666813 54666813 C A TMC4 Nonsense_Mutation p.E459* 0.18 TCGA-FD-A43P-01 19 55147903 55147903 C T AC009892.10 Intron 0.32 TCGA-FD-A43P-01 19 57931662 57931662 C G ZNF17 Missense_Mutation p.H268D 0.19 deleterious(0) possibly_damaging(0.472) TCGA-FD-A43P-01 19 58102455 58102455 C T ZIK1 Missense_Mutation p.R426W 0.42 tolerated(0.15) probably_damaging(0.999) TCGA-FD-A43P-01 19 58231713 58231713 C T ZNF671 3'UTR 0.24 TCGA-FD-A43P-01 19 58384994 58384994 G A ZNF814 Silent p.I588I 0.24 TCGA-FD-A43P-01 19 7591349 7591349 C T MCOLN1 Nonsense_Mutation p.Q88* 0.14 TCGA-FD-A43P-01 19 7987036 7987036 C T SNAPC2 Silent p.P163P 0.19 TCGA-FD-A43P-01 19 9065731 9065731 C G MUC16 Missense_Mutation p.E7239Q 0.18 unknown(0) TCGA-FD-A43P-01 1 110302429 110302429 C G EPS8L3 Missense_Mutation p.Q42H 0.26 tolerated(0.06) benign(0.178) TCGA-FD-A43P-01 1 113459950 113459950 C T SLC16A1 Missense_Mutation p.A360T 0.39 deleterious(0.03) probably_damaging(0.911) TCGA-FD-A43P-01 1 115256566 115256566 C T NRAS Missense_Mutation p.E49K 0.23 tolerated(0.07) probably_damaging(0.972) TCGA-FD-A43P-01 1 117122078 117122078 C A IGSF3 Missense_Mutation p.Q1110H 0.17 tolerated(0.13) benign(0.321) TCGA-FD-A43P-01 1 11983340 11983340 G A KIAA2013 Missense_Mutation p.P414S 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-FD-A43P-01 1 12557566 12557566 G A VPS13D Silent p.Q4225Q 0.12 TCGA-FD-A43P-01 1 1262984 1262984 C T GLTPD1 Silent p.F162F 0.17 TCGA-FD-A43P-01 1 145440714 145440714 G A TXNIP Missense_Mutation p.R305K 0.17 deleterious(0.03) possibly_damaging(0.482) TCGA-FD-A43P-01 1 150598140 150598140 G C ENSA Missense_Mutation p.L126V 0.09 deleterious(0.04) possibly_damaging(0.646) TCGA-FD-A43P-01 1 150722492 150722492 G T CTSS Silent p.L261L 0.06 TCGA-FD-A43P-01 1 151278680 151278680 T C PI4KB Missense_Mutation p.T460A 0.61 tolerated(0.2) benign(0.281) TCGA-FD-A43P-01 1 151316349 151316349 C A RFX5 Missense_Mutation p.G189C 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A43P-01 1 152326544 152326544 G A FLG2 Missense_Mutation p.H1240Y 0.63 unknown(0) TCGA-FD-A43P-01 1 154140261 154140261 G A TPM3 3'UTR 0.55 TCGA-FD-A43P-01 1 154961103 154961103 G A FLAD1 Missense_Mutation p.E299K 0.30 tolerated(0.43) benign(0.002) TCGA-FD-A43P-01 1 155451088 155451088 C T ASH1L Missense_Mutation p.V525I 0.31 deleterious_low_confidence(0.04) benign(0.009) TCGA-FD-A43P-01 1 156348025 156348025 C T RHBG Intron 0.19 TCGA-FD-A43P-01 1 156563790 156563790 C T APOA1BP Missense_Mutation p.R261C 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 1 156697061 156697061 C G ISG20L2 Missense_Mutation p.K128N 0.15 tolerated(0.07) possibly_damaging(0.642) TCGA-FD-A43P-01 1 160395210 160395210 G A VANGL2 3'UTR 0.46 TCGA-FD-A43P-01 1 16901149 16901149 T A NBPF1 Missense_Mutation p.D744V 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 1 183885721 183885721 G A RGL1 Silent p.V665V 0.16 TCGA-FD-A43P-01 1 185966610 185966610 A C HMCN1 Missense_Mutation p.Q1276H 0.47 probably_damaging(0.996) TCGA-FD-A43P-01 1 186412959 186412959 G C PDC 3'UTR 0.36 TCGA-FD-A43P-01 1 18962743 18962743 C T PAX7 Missense_Mutation p.S155L 0.11 deleterious(0) possibly_damaging(0.789) TCGA-FD-A43P-01 1 190067757 190067757 G A BRINP3 Silent p.T564T 0.14 TCGA-FD-A43P-01 1 201982416 201982416 G C ELF3 Missense_Mutation p.K265N 0.20 deleterious(0) possibly_damaging(0.735) TCGA-FD-A43P-01 1 210015714 210015714 G C DIEXF Missense_Mutation p.Q530H 0.13 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 1 220792050 220792050 C T MARK1 Silent p.L288L 0.10 TCGA-FD-A43P-01 1 221913020 221913020 G C DUSP10 Missense_Mutation p.L23V 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FD-A43P-01 1 22413001 22413001 C T CDC42 Missense_Mutation p.S83L 0.16 deleterious(0.02) probably_damaging(0.949) TCGA-FD-A43P-01 1 226925056 226925056 G A ITPKB Missense_Mutation p.P35L 0.27 tolerated_low_confidence(0.08) benign(0) TCGA-FD-A43P-01 1 228210553 228210553 G A WNT3A Nonsense_Mutation p.W86* 0.44 TCGA-FD-A43P-01 1 230845796 230845796 C A AGT Silent p.L267L 0.32 TCGA-FD-A43P-01 1 233394744 233394744 G C PCNXL2 Silent p.V288V 0.36 TCGA-FD-A43P-01 1 235403726 235403726 C T ARID4B Missense_Mutation p.E163K 0.14 deleterious(0.04) benign(0.16) TCGA-FD-A43P-01 1 235403735 235403735 C T ARID4B Missense_Mutation p.D160N 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A43P-01 1 235613387 235613387 C T B3GALNT2 3'UTR 0.24 TCGA-FD-A43P-01 1 2452671 2452671 C G PANK4 Missense_Mutation p.E97D 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A43P-01 1 247150215 247150215 T C ZNF695 3'UTR 0.44 TCGA-FD-A43P-01 1 247587339 247587339 C - NLRP3 Frame_Shift_Del p.V200* 0.14 TCGA-FD-A43P-01 1 247588549 247588549 C T NLRP3 Nonsense_Mutation p.Q602* 0.35 TCGA-FD-A43P-01 1 248525218 248525218 G T OR2T4 Missense_Mutation p.K112N 0.37 deleterious(0.01) benign(0.077) TCGA-FD-A43P-01 1 248551675 248551675 T C OR2T6 Silent p.L256L 0.12 TCGA-FD-A43P-01 1 27124360 27124360 G T PIGV 3'UTR 0.14 TCGA-FD-A43P-01 1 27660657 27660657 G A TMEM222 Missense_Mutation p.D142N 0.16 deleterious(0.01) possibly_damaging(0.893) TCGA-FD-A43P-01 1 27878146 27878146 C T AHDC1 Missense_Mutation p.G161S 0.33 tolerated_low_confidence(0.29) probably_damaging(0.935) TCGA-FD-A43P-01 1 32162639 32162639 G T COL16A1 Silent p.L263L 0.29 TCGA-FD-A43P-01 1 33238473 33238473 G A KIAA1522 Silent p.Q1090Q 0.15 TCGA-FD-A43P-01 1 46827286 46827286 C G NSUN4 Missense_Mutation p.S308C 0.14 deleterious(0.01) probably_damaging(1) TCGA-FD-A43P-01 1 46827299 46827299 C G NSUN4 Silent p.L312L 0.15 TCGA-FD-A43P-01 1 52800415 52800415 C T ZFYVE9 Silent p.Y1215Y 0.15 TCGA-FD-A43P-01 1 53701308 53701308 C T MAGOH Splice_Site p.X30_splice 0.12 TCGA-FD-A43P-01 1 55161106 55161106 G A MROH7 Silent p.P969P 0.18 TCGA-FD-A43P-01 1 6505989 6505989 G A ESPN Silent p.K486K 0.12 TCGA-FD-A43P-01 1 6639029 6639029 C G TAS1R1 Silent p.L637L 0.25 TCGA-FD-A43P-01 1 892340 892340 C T NOC2L Silent p.L140L 0.23 TCGA-FD-A43P-01 20 1551465 1551465 G C SIRPB1 Nonsense_Mutation p.S357* 0.13 TCGA-FD-A43P-01 20 16355039 16355039 G A KIF16B Silent p.I1071I 0.15 TCGA-FD-A43P-01 20 20033191 20033191 C T CRNKL1 Silent p.K93K 0.20 TCGA-FD-A43P-01 20 20656892 20656892 G T RALGAPA2 Silent p.L86L 0.21 TCGA-FD-A43P-01 20 23548949 23548949 G C CST9L Missense_Mutation p.L47V 0.11 tolerated(0.13) possibly_damaging(0.627) TCGA-FD-A43P-01 20 24565515 24565515 G C SYNDIG1 Missense_Mutation p.E168D 0.17 tolerated(0.18) benign(0.133) TCGA-FD-A43P-01 20 25038537 25038537 C T ACSS1 Missense_Mutation p.E68K 0.23 tolerated(0.06) benign(0.186) TCGA-FD-A43P-01 20 2847279 2847279 G A VPS16 3'UTR 0.21 TCGA-FD-A43P-01 20 33433140 33433140 G A GGT7 Silent p.T660T 0.09 TCGA-FD-A43P-01 20 33519742 33519742 C T GSS Silent p.V343V 0.11 TCGA-FD-A43P-01 20 39746916 39746916 A T TOP1 Missense_Mutation p.M644L 0.40 deleterious(0.01) benign(0.44) TCGA-FD-A43P-01 20 40044141 40044141 G C CHD6 Silent p.L2208L 0.15 TCGA-FD-A43P-01 20 41408867 41408867 G A PTPRT Missense_Mutation p.H187Y 0.43 tolerated(1) benign(0.221) TCGA-FD-A43P-01 20 42275755 42275755 C T IFT52 3'UTR 0.77 TCGA-FD-A43P-01 20 42788562 42788562 C T JPH2 Missense_Mutation p.E289K 0.11 deleterious(0) probably_damaging(0.997) TCGA-FD-A43P-01 20 43150563 43150563 G A SERINC3 Silent p.L10L 0.54 TCGA-FD-A43P-01 20 44313424 44313424 G T WFDC10B 3'UTR 0.06 TCGA-FD-A43P-01 20 44512571 44512571 C A ZSWIM1 Missense_Mutation p.T447N 0.06 deleterious(0.01) possibly_damaging(0.647) TCGA-FD-A43P-01 20 44686275 44686275 C A SLC12A5 3'UTR 0.85 TCGA-FD-A43P-01 20 5904196 5904196 G C CHGB Missense_Mutation p.R469T 0.24 deleterious(0.01) possibly_damaging(0.606) TCGA-FD-A43P-01 20 5904420 5904420 G A CHGB Missense_Mutation p.D544N 0.16 deleterious(0) probably_damaging(0.998) TCGA-FD-A43P-01 21 11049475 11049475 C T BAGE2 RNA 0.05 TCGA-FD-A43P-01 21 34655426 34655426 G C IL10RB Missense_Mutation p.E176Q 0.12 tolerated(0.06) possibly_damaging(0.622) TCGA-FD-A43P-01 21 34655451 34655451 G A IL10RB Nonsense_Mutation p.W184* 0.14 TCGA-FD-A43P-01 21 36252892 36252892 C G RUNX1 Missense_Mutation p.R157T 0.20 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 21 45978112 45978112 G A KRTAP10-3 Missense_Mutation p.R163C 0.26 deleterious(0.03) unknown(0) TCGA-FD-A43P-01 21 47685237 47685237 C T MCM3AP Missense_Mutation p.E1078K 0.18 tolerated(0.69) benign(0.007) TCGA-FD-A43P-01 22 19969579 19969579 C T ARVCF Silent p.T82T 0.22 TCGA-FD-A43P-01 22 20131232 20131232 C T ZDHHC8 Silent p.F693F 0.37 TCGA-FD-A43P-01 22 37425330 37425330 G A MPST Silent p.E243E 0.44 TCGA-FD-A43P-01 22 37425343 37425343 G A MPST Missense_Mutation p.E248K 0.43 tolerated(0.14) benign(0.042) TCGA-FD-A43P-01 2 105472182 105472182 A G POU3F3 Missense_Mutation p.M72V 0.22 deleterious_low_confidence(0.01) benign(0.005) TCGA-FD-A43P-01 2 107040702 107040702 C T RGPD3 Missense_Mutation p.E1241K 0.05 deleterious(0) possibly_damaging(0.482) TCGA-FD-A43P-01 2 107040765 107040765 C G RGPD3 Missense_Mutation p.E1220Q 0.08 tolerated(0.11) possibly_damaging(0.756) TCGA-FD-A43P-01 2 108999548 108999548 G C SULT1C4 Splice_Site p.X132_splice 0.19 TCGA-FD-A43P-01 2 111427113 111427113 G A BUB1 Silent p.L162L 0.13 TCGA-FD-A43P-01 2 112863603 112863603 C G TMEM87B Nonsense_Mutation p.S492* 0.11 TCGA-FD-A43P-01 2 113089973 113089973 A G ZC3H6 Missense_Mutation p.T1160A 0.11 tolerated(0.8) benign(0.006) TCGA-FD-A43P-01 2 135711250 135711250 G A CCNT2 Missense_Mutation p.E409K 0.31 tolerated(0.19) benign(0.09) TCGA-FD-A43P-01 2 135738862 135738862 C G MAP3K19 Missense_Mutation p.S1150T 0.19 deleterious(0) probably_damaging(0.932) TCGA-FD-A43P-01 2 136402996 136402996 C A R3HDM1 Missense_Mutation p.P508T 0.11 tolerated(0.09) benign(0.325) TCGA-FD-A43P-01 2 136403065 136403065 C G R3HDM1 Missense_Mutation p.Q531E 0.11 tolerated(0.05) benign(0.196) TCGA-FD-A43P-01 2 165552087 165552087 C G COBLL1 Missense_Mutation p.Q643H 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 2 170044738 170044738 C T LRP2 Missense_Mutation p.E3024K 0.09 probably_damaging(1) TCGA-FD-A43P-01 2 176857064 176857064 G C KIAA1715 Nonsense_Mutation p.S51* 0.21 TCGA-FD-A43P-01 2 179638607 179638607 G C TTN Missense_Mutation p.P2430A 0.16 TCGA-FD-A43P-01 2 18113262 18113262 C G KCNS3 Silent p.L329L 0.39 TCGA-FD-A43P-01 2 187364925 187364925 C A ZC3H15 Missense_Mutation p.A65D 0.30 tolerated(0.59) benign(0.002) TCGA-FD-A43P-01 2 189898915 189898915 C T COL5A2 Missense_Mutation p.V1461I 0.08 unknown(0) TCGA-FD-A43P-01 2 190603290 190603290 G C ANKAR Splice_Site p.X1195_splice 0.12 TCGA-FD-A43P-01 2 197986230 197986230 G A ANKRD44 Silent p.H244H 0.28 TCGA-FD-A43P-01 2 215851337 215851337 G C ABCA12 Silent p.L1364L 0.28 TCGA-FD-A43P-01 2 220034642 220034642 G C SLC23A3 Missense_Mutation p.P22R 0.10 tolerated_low_confidence(0.32) benign(0.004) TCGA-FD-A43P-01 2 220434993 220434993 G A OBSL1 Missense_Mutation p.A321V 0.20 deleterious(0) probably_damaging(0.983) TCGA-FD-A43P-01 2 227964340 227964340 G C COL4A4 Silent p.L365L 0.11 TCGA-FD-A43P-01 2 234359572 234359572 G A DGKD Silent p.S681S 0.11 TCGA-FD-A43P-01 2 235950438 235950438 C T SH3BP4 Missense_Mutation p.P342L 0.38 deleterious(0) probably_damaging(0.997) TCGA-FD-A43P-01 2 242432771 242432771 G A FARP2 Missense_Mutation p.D987N 0.39 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 2 242757774 242757774 C T NEU4 Silent p.A298A 0.27 TCGA-FD-A43P-01 2 27480787 27480787 G A SLC30A3 Silent p.V188V 0.12 TCGA-FD-A43P-01 2 27804528 27804528 C A C2orf16 Missense_Mutation p.P1697T 0.18 tolerated(0.2) possibly_damaging(0.503) TCGA-FD-A43P-01 2 27804642 27804642 C T C2orf16 Missense_Mutation p.H1735Y 0.14 tolerated(0.95) possibly_damaging(0.759) TCGA-FD-A43P-01 2 3504729 3504729 G A ADI1 Silent p.D92D 0.09 TCGA-FD-A43P-01 2 43937155 43937155 G A PLEKHH2 Missense_Mutation p.E665K 0.17 deleterious(0) benign(0.394) TCGA-FD-A43P-01 2 45620237 45620237 C A SRBD1 Nonsense_Mutation p.E849* 0.15 TCGA-FD-A43P-01 2 60688205 60688205 C G BCL11A Silent p.S614S 0.29 TCGA-FD-A43P-01 2 69002286 69002286 C G ARHGAP25 Intron 0.12 TCGA-FD-A43P-01 2 73315749 73315749 G A RAB11FIP5 Missense_Mutation p.R333C 0.14 deleterious(0) possibly_damaging(0.891) TCGA-FD-A43P-01 2 74756539 74756539 C T AUP1 Silent p.G46G 0.38 TCGA-FD-A43P-01 2 85051230 85051230 G C TRABD2A Nonsense_Mutation p.S345* 0.30 TCGA-FD-A43P-01 2 88484947 88484947 C T THNSL2 Missense_Mutation p.S393L 0.17 deleterious(0) possibly_damaging(0.672) TCGA-FD-A43P-01 2 97026340 97026340 G C NCAPH Silent p.L493L 0.07 TCGA-FD-A43P-01 2 97215195 97215195 G C ARID5A Missense_Mutation p.Q86H 0.24 deleterious(0) probably_damaging(0.968) TCGA-FD-A43P-01 2 98275437 98275437 G C ACTR1B Silent p.L115L 0.11 TCGA-FD-A43P-01 3 100962624 100962624 G A IMPG2 Nonsense_Mutation p.Q851* 0.12 TCGA-FD-A43P-01 3 10328481 10328481 C G GHRL Missense_Mutation p.D81H 0.11 deleterious(0) probably_damaging(0.993) TCGA-FD-A43P-01 3 111602964 111602964 C T PHLDB2 Nonsense_Mutation p.Q14* 0.36 TCGA-FD-A43P-01 3 119132778 119132778 G C ARHGAP31 Missense_Mutation p.E668Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A43P-01 3 121976023 121976023 G A CASR Missense_Mutation p.G94E 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 3 133647345 133647345 C T C3orf36 Silent p.T101T 0.12 TCGA-FD-A43P-01 3 13417811 13417811 G C NUP210 Missense_Mutation p.L425V 0.08 deleterious(0) possibly_damaging(0.687) TCGA-FD-A43P-01 3 136699359 136699359 A G IL20RB Missense_Mutation p.N47S 0.35 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 3 140123515 140123515 G T CLSTN2 Nonsense_Mutation p.E182* 0.20 TCGA-FD-A43P-01 3 14563282 14563282 C T GRIP2 RNA 0.10 TCGA-FD-A43P-01 3 164750420 164750420 G A SI Nonsense_Mutation p.Q876* 0.08 TCGA-FD-A43P-01 3 182913023 182913023 C G MCF2L2 Missense_Mutation p.E969Q 0.12 tolerated(0.42) benign(0.004) TCGA-FD-A43P-01 3 194167800 194167800 T C ATP13A3 Silent p.T451T 0.23 TCGA-FD-A43P-01 3 194877200 194877200 G A XXYLT1 Missense_Mutation p.R255W 0.19 deleterious(0.01) probably_damaging(0.939) TCGA-FD-A43P-01 3 196381493 196381493 C T NRROS Missense_Mutation p.A28V 0.07 tolerated(0.26) benign(0.06) TCGA-FD-A43P-01 3 38812863 38812863 A C SCN10A Missense_Mutation p.L169W 0.12 deleterious(0) probably_damaging(0.994) TCGA-FD-A43P-01 3 39176606 39176606 G C TTC21A Missense_Mutation p.R969T 0.19 deleterious(0) probably_damaging(0.995) TCGA-FD-A43P-01 3 42251697 42251697 G A TRAK1 Intron 0.15 TCGA-FD-A43P-01 3 46497467 46497467 C T LTF Silent p.Q106Q 0.40 TCGA-FD-A43P-01 3 46712417 46712417 G A ALS2CL 3'UTR 0.17 TCGA-FD-A43P-01 3 49698963 49698963 C G BSN Missense_Mutation p.R3229G 0.07 unknown(0) TCGA-FD-A43P-01 3 49743442 49743442 G A RNF123 Missense_Mutation p.E778K 0.30 deleterious(0.02) possibly_damaging(0.871) TCGA-FD-A43P-01 3 57743331 57743331 G T SLMAP 5'UTR 0.36 TCGA-FD-A43P-01 3 64587670 64587670 G A ADAMTS9 Missense_Mutation p.R1323C 0.23 deleterious(0.01) possibly_damaging(0.587) TCGA-FD-A43P-01 3 9796493 9796493 G A OGG1 Nonsense_Mutation p.W224* 0.60 TCGA-FD-A43P-01 3 99890700 99890700 G C CMSS1 Missense_Mutation p.R179T 0.09 deleterious(0) benign(0.139) TCGA-FD-A43P-01 4 109895712 109895712 G A COL25A1 Missense_Mutation p.P148S 0.08 tolerated(0.72) unknown(0) TCGA-FD-A43P-01 4 119944686 119944686 C T SYNPO2 Silent p.V69V 0.17 TCGA-FD-A43P-01 4 122734414 122734414 G A EXOSC9 Missense_Mutation p.A285T 0.08 deleterious(0) benign(0.123) TCGA-FD-A43P-01 4 126355501 126355501 C T FAT4 Missense_Mutation p.P2374S 0.21 benign(0.021) TCGA-FD-A43P-01 4 126373411 126373411 C A FAT4 Missense_Mutation p.A3747D 0.12 benign(0.355) TCGA-FD-A43P-01 4 126400924 126400924 C T FAT4 Missense_Mutation p.R4168C 0.21 benign(0.238) TCGA-FD-A43P-01 4 144390270 144390270 G C GAB1 Missense_Mutation p.K701N 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A43P-01 4 144390332 144390332 G C GAB1 Missense_Mutation p.S722T 0.14 deleterious(0.01) benign(0.06) TCGA-FD-A43P-01 4 145567947 145567947 G C HHIP Silent p.L40L 0.15 TCGA-FD-A43P-01 4 170077566 170077566 G C SH3RF1 Missense_Mutation p.P220A 0.09 tolerated(0.39) probably_damaging(0.996) TCGA-FD-A43P-01 4 185646129 185646129 C G CENPU Missense_Mutation p.G101A 0.25 tolerated(0.12) possibly_damaging(0.804) TCGA-FD-A43P-01 4 2927742 2927742 G C ADD1 Missense_Mutation p.E619D 0.23 tolerated(0.62) benign(0.005) TCGA-FD-A43P-01 4 40351283 40351283 C G CHRNA9 Silent p.L250L 0.16 TCGA-FD-A43P-01 4 54310234 54310234 G A FIP1L1 Missense_Mutation p.D417N 0.11 deleterious(0.04) probably_damaging(0.995) TCGA-FD-A43P-01 4 66280007 66280007 G T EPHA5 Missense_Mutation p.P561Q 0.13 tolerated(0.17) probably_damaging(0.994) TCGA-FD-A43P-01 4 69111329 69111329 C T TMPRSS11B 5'UTR 0.23 TCGA-FD-A43P-01 4 71588450 71588450 C T RUFY3 Missense_Mutation p.P54S 0.16 tolerated(0.06) possibly_damaging(0.57) TCGA-FD-A43P-01 4 74964627 74964627 G A CXCL2 Missense_Mutation p.A38V 0.35 tolerated(1) benign(0.009) TCGA-FD-A43P-01 4 79173586 79173586 C G FRAS1 Missense_Mutation p.S117C 0.19 probably_damaging(0.948) TCGA-FD-A43P-01 4 8417519 8417519 C A ACOX3 Missense_Mutation p.A118S 0.20 tolerated(0.4) benign(0.003) TCGA-FD-A43P-01 4 89034630 89034630 G A ABCG2 Missense_Mutation p.S340F 0.20 deleterious(0.04) benign(0.029) TCGA-FD-A43P-01 4 90170805 90170805 C G GPRIN3 Missense_Mutation p.D153H 0.23 deleterious(0.04) benign(0.013) TCGA-FD-A43P-01 5 112327853 112327853 G A DCP2 Missense_Mutation p.E81K 0.50 tolerated(0.19) probably_damaging(0.999) TCGA-FD-A43P-01 5 112336849 112336849 C T DCP2 Silent p.I167I 0.28 TCGA-FD-A43P-01 5 112346480 112346480 A G DCP2 Missense_Mutation p.K359E 0.50 deleterious_low_confidence(0.02) benign(0.097) TCGA-FD-A43P-01 5 139866621 139866621 C G ANKHD1 Missense_Mutation p.P741A 0.11 unknown(0) TCGA-FD-A43P-01 5 140167538 140167538 G T PCDHA1 Missense_Mutation p.V555L 0.15 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-FD-A43P-01 5 140187630 140187630 G A PCDHA4 Silent p.S286S 0.13 TCGA-FD-A43P-01 5 140209478 140209478 C T PCDHA6 Missense_Mutation p.S601L 0.21 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-FD-A43P-01 5 140682849 140682849 C T SLC25A2 Missense_Mutation p.R195Q 0.46 deleterious(0) probably_damaging(0.994) TCGA-FD-A43P-01 5 140736622 140736622 G A PCDHGA4 Missense_Mutation p.V619M 0.50 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FD-A43P-01 5 140794860 140794860 C T PCDHGA10 Silent p.C706C 0.16 TCGA-FD-A43P-01 5 140856230 140856230 C T PCDHGC3 Missense_Mutation p.R183C 0.12 deleterious(0.02) possibly_damaging(0.809) TCGA-FD-A43P-01 5 141017787 141017787 G A RELL2 5'UTR 0.12 TCGA-FD-A43P-01 5 14336674 14336674 G A TRIO Silent p.L628L 0.49 TCGA-FD-A43P-01 5 145393557 145393557 C T SH3RF2 Missense_Mutation p.S331F 0.12 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 5 146778786 146778786 G A DPYSL3 Silent p.F494F 0.39 TCGA-FD-A43P-01 5 150701480 150701480 C T SLC36A2 Intron 0.38 TCGA-FD-A43P-01 5 150701542 150701542 C G SLC36A2 Intron 0.53 TCGA-FD-A43P-01 5 180375352 180375352 C T BTNL8 Intron 0.33 TCGA-FD-A43P-01 5 31526849 31526849 G C DROSHA Nonsense_Mutation p.S64* 0.43 TCGA-FD-A43P-01 5 32312966 32312966 G A MTMR12 5'UTR 0.46 TCGA-FD-A43P-01 5 36035780 36035780 C T UGT3A2 3'UTR 0.31 TCGA-FD-A43P-01 5 40834706 40834706 C T RPL37 Silent p.T2T 0.09 TCGA-FD-A43P-01 5 41176712 41176712 G T C6 Missense_Mutation p.L345M 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A43P-01 5 41870427 41870427 G A OXCT1 Missense_Mutation p.R12W 0.23 deleterious(0.04) benign(0) TCGA-FD-A43P-01 5 41870435 41870435 G A OXCT1 Missense_Mutation p.S9F 0.23 tolerated(0.07) benign(0.002) TCGA-FD-A43P-01 5 70845431 70845431 G A BDP1 Missense_Mutation p.M2331I 0.09 tolerated(0.13) benign(0.075) TCGA-FD-A43P-01 5 82937590 82937590 G C HAPLN1 Missense_Mutation p.L264V 0.09 deleterious(0) benign(0.253) TCGA-FD-A43P-01 6 106552896 106552896 G A PRDM1 Silent p.G287G 0.96 TCGA-FD-A43P-01 6 107531746 107531746 T A PDSS2 Missense_Mutation p.K302I 0.51 tolerated(0.09) possibly_damaging(0.703) TCGA-FD-A43P-01 6 128150922 128150922 G C THEMIS Missense_Mutation p.I136M 0.37 deleterious(0.01) probably_damaging(0.973) TCGA-FD-A43P-01 6 129929068 129929068 C T ARHGAP18 Missense_Mutation p.E418K 0.11 deleterious(0.02) benign(0.206) TCGA-FD-A43P-01 6 133138120 133138120 G C RPS12 Missense_Mutation p.G86R 0.17 deleterious(0.05) probably_damaging(0.998) TCGA-FD-A43P-01 6 134349993 134349993 C A SLC2A12 Nonsense_Mutation p.G324* 0.08 TCGA-FD-A43P-01 6 142691477 142691477 A G GPR126 Missense_Mutation p.N206D 0.38 tolerated(1) benign(0.003) TCGA-FD-A43P-01 6 144814452 144814452 T G UTRN Missense_Mutation p.L1485V 0.26 deleterious(0) probably_damaging(0.997) TCGA-FD-A43P-01 6 146720081 146720081 G C GRM1 Missense_Mutation p.A636P 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-FD-A43P-01 6 152651471 152651471 G A SYNE1 Silent p.H4783H 0.17 TCGA-FD-A43P-01 6 152772275 152772275 G T SYNE1 Missense_Mutation p.F1031L 0.16 benign(0.016) TCGA-FD-A43P-01 6 159457210 159457210 C T TAGAP Silent p.V615V 0.22 TCGA-FD-A43P-01 6 25495413 25495413 C T LRRC16A Missense_Mutation p.S432L 0.12 deleterious(0) possibly_damaging(0.792) TCGA-FD-A43P-01 6 26045756 26045756 C G HIST1H3C Missense_Mutation p.H40D 0.29 deleterious_low_confidence(0) benign(0.006) TCGA-FD-A43P-01 6 26217628 26217628 G T HIST1H2AE 3'UTR 0.26 TCGA-FD-A43P-01 6 26252016 26252016 G A HIST1H2BH Silent p.L46L 0.16 TCGA-FD-A43P-01 6 26252018 26252018 A G HIST1H2BH Missense_Mutation p.K47R 0.35 deleterious_low_confidence(0.03) benign(0.217) TCGA-FD-A43P-01 6 28334028 28334028 G A ZKSCAN3 Missense_Mutation p.R528K 0.13 deleterious(0.02) benign(0.102) TCGA-FD-A43P-01 6 29080538 29080538 C G OR2J3 Missense_Mutation p.L291V 0.12 tolerated(0.06) probably_damaging(0.977) TCGA-FD-A43P-01 6 29974441 29974441 G A ZNRD1-AS1 Intron 0.12 TCGA-FD-A43P-01 6 30134998 30134998 G A TRIM15 Missense_Mutation p.E143K 0.10 tolerated(0.18) benign(0.004) TCGA-FD-A43P-01 6 31112501 31112501 C A CCHCR1 Missense_Mutation p.R710S 0.17 tolerated(0.12) benign(0.332) TCGA-FD-A43P-01 6 31606898 31606898 G C BAG6 3'UTR 0.47 TCGA-FD-A43P-01 6 31683352 31683352 C T LY6G6F 3'Flank 0.36 TCGA-FD-A43P-01 6 31729660 31729660 G A MSH5 Silent p.A750A 0.11 TCGA-FD-A43P-01 6 35053650 35053650 G C ANKS1A Missense_Mutation p.E1080D 0.32 tolerated(0.19) benign(0.004) TCGA-FD-A43P-01 6 36262034 36262034 C G PNPLA1 Missense_Mutation p.S191C 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A43P-01 6 36867355 36867355 G C C6orf89 Missense_Mutation p.K52N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A43P-01 6 38818165 38818165 G A DNAH8 Missense_Mutation p.E1563K 0.25 probably_damaging(0.98) TCGA-FD-A43P-01 6 49705096 49705096 G A CRISP3 Missense_Mutation p.P28L 0.14 tolerated(0.37) benign(0.017) TCGA-FD-A43P-01 6 49815937 49815937 C G CRISP1 Missense_Mutation p.E91Q 0.15 tolerated(0.05) benign(0.338) TCGA-FD-A43P-01 6 52381530 52381530 C T TRAM2 Missense_Mutation p.E64K 0.10 tolerated(0.1) possibly_damaging(0.805) TCGA-FD-A43P-01 6 55378866 55378866 G A HMGCLL1 Silent p.H204H 0.23 TCGA-FD-A43P-01 6 6167798 6167798 C T F13A1 Missense_Mutation p.E601K 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A43P-01 6 72968708 72968708 C G RIMS1 Missense_Mutation p.P983A 0.11 tolerated(0.23) benign(0.129) TCGA-FD-A43P-01 7 100064708 100064708 C T TSC22D4 Silent p.R354R 0.26 TCGA-FD-A43P-01 7 100676455 100676455 G C MUC17 Missense_Mutation p.E586D 0.13 probably_damaging(0.977) TCGA-FD-A43P-01 7 113518914 113518914 A G PPP1R3A Missense_Mutation p.S745P 0.20 tolerated(0.06) possibly_damaging(0.88) TCGA-FD-A43P-01 7 128496692 128496692 G T FLNC Nonsense_Mutation p.E2458* 0.16 TCGA-FD-A43P-01 7 144099025 144099025 C T NOBOX Missense_Mutation p.E77K 0.19 tolerated_low_confidence(0.1) benign(0.001) TCGA-FD-A43P-01 7 146536841 146536841 C G CNTNAP2 Missense_Mutation p.Q83E 0.12 deleterious(0) probably_damaging(0.989) TCGA-FD-A43P-01 7 150779321 150779321 G C TMUB1 Silent p.L110L 0.11 TCGA-FD-A43P-01 7 151875018 151875018 C T KMT2C Missense_Mutation p.G2507E 0.34 possibly_damaging(0.792) TCGA-FD-A43P-01 7 151962148 151962148 C T KMT2C Missense_Mutation p.E387K 0.05 benign(0.437) TCGA-FD-A43P-01 7 158560363 158560363 C T ESYT2 Silent p.L350L 0.15 TCGA-FD-A43P-01 7 19185007 19185007 C G FERD3L 5'UTR 0.20 TCGA-FD-A43P-01 7 19748503 19748503 G A TWISTNB Missense_Mutation p.S46L 0.26 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 7 23296615 23296615 G A GPNMB Missense_Mutation p.D158N 0.32 deleterious(0.02) probably_damaging(0.982) TCGA-FD-A43P-01 7 25175590 25175590 C G C7orf31 3'UTR 0.16 TCGA-FD-A43P-01 7 56079509 56079509 G A PSPH Silent p.N208N 0.08 TCGA-FD-A43P-01 7 56174090 56174090 C A CHCHD2 Missense_Mutation p.R6L 0.11 deleterious(0) unknown(0) TCGA-FD-A43P-01 7 77649121 77649121 G A MAGI2 Silent p.D1293D 0.18 TCGA-FD-A43P-01 7 83689824 83689824 C G SEMA3A Missense_Mutation p.K168N 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 7 83739857 83739857 G C SEMA3A Missense_Mutation p.H128D 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 7 91866996 91866996 G T KRIT1 Missense_Mutation p.P114T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A43P-01 7 92760767 92760767 G C SAMD9L Silent p.L1506L 0.28 TCGA-FD-A43P-01 7 94897911 94897911 G A PPP1R9A Silent p.L905L 0.15 TCGA-FD-A43P-01 7 98254326 98254326 G A NPTX2 Missense_Mutation p.E246K 0.16 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 7 99103871 99103871 C T ZKSCAN5 Silent p.L68L 0.15 TCGA-FD-A43P-01 7 99457467 99457467 G A CYP3A43 Missense_Mutation p.E294K 0.12 deleterious(0) probably_damaging(0.98) TCGA-FD-A43P-01 7 99578468 99578468 G C AZGP1 5'Flank 0.08 TCGA-FD-A43P-01 8 110520098 110520098 C T PKHD1L1 Missense_Mutation p.P3734L 0.17 deleterious(0) probably_damaging(0.933) TCGA-FD-A43P-01 8 113529371 113529371 C T CSMD3 Missense_Mutation p.V1550I 0.10 tolerated(0.54) benign(0.042) TCGA-FD-A43P-01 8 124663842 124663842 A T KLHL38 Missense_Mutation p.M442K 0.23 deleterious(0.01) benign(0.011) TCGA-FD-A43P-01 8 124811833 124811833 G A FAM91A1 Missense_Mutation p.G545E 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 8 12956999 12956999 C T DLC1 Silent p.Q949Q 0.12 TCGA-FD-A43P-01 8 145154703 145154703 C T SHARPIN Missense_Mutation p.E188K 0.21 tolerated(0.33) benign(0.052) TCGA-FD-A43P-01 8 145542172 145542172 G A DGAT1 Silent p.L176L 0.13 TCGA-FD-A43P-01 8 145741411 145741411 C T RECQL4 Silent p.V364V 0.11 TCGA-FD-A43P-01 8 146029040 146029040 C T ZNF517 Silent p.F16F 0.24 TCGA-FD-A43P-01 8 21840157 21840157 G C XPO7 Missense_Mutation p.E371Q 0.16 tolerated(0.92) benign(0.056) TCGA-FD-A43P-01 8 21856690 21856690 G A XPO7 Silent p.L839L 0.20 TCGA-FD-A43P-01 8 27516381 27516381 G A SCARA3 Missense_Mutation p.E232K 0.24 tolerated(0.24) possibly_damaging(0.461) TCGA-FD-A43P-01 8 49647690 49647690 C T EFCAB1 Silent p.Q7Q 0.10 TCGA-FD-A43P-01 8 53574156 53574156 T C RB1CC1 Missense_Mutation p.I433V 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-FD-A43P-01 8 56436504 56436504 C T XKR4 Silent p.S557S 0.27 TCGA-FD-A43P-01 8 59508201 59508201 C T NSMAF Missense_Mutation p.D635N 0.20 tolerated(0.17) benign(0.067) TCGA-FD-A43P-01 8 59522163 59522163 C T NSMAF Silent p.P260P 0.22 TCGA-FD-A43P-01 8 61654655 61654655 C G CHD7 Missense_Mutation p.Q222E 0.20 benign(0.042) TCGA-FD-A43P-01 8 61654783 61654783 C A CHD7 Silent p.L264L 0.14 TCGA-FD-A43P-01 8 61654931 61654931 C G CHD7 Missense_Mutation p.P314A 0.15 possibly_damaging(0.539) TCGA-FD-A43P-01 8 61654949 61654949 C G CHD7 Missense_Mutation p.Q320E 0.13 benign(0.042) TCGA-FD-A43P-01 8 61655050 61655050 C G CHD7 Missense_Mutation p.F353L 0.21 benign(0.153) TCGA-FD-A43P-01 8 61655066 61655066 C G CHD7 Missense_Mutation p.Q359E 0.16 benign(0) TCGA-FD-A43P-01 8 61655511 61655511 C G CHD7 Missense_Mutation p.S507C 0.20 benign(0.004) TCGA-FD-A43P-01 8 68163587 68163587 G C ARFGEF1 Missense_Mutation p.Q933E 0.14 tolerated(0.31) benign(0.005) TCGA-FD-A43P-01 8 86129720 86129720 C T C8orf59 Silent p.K3K 0.07 TCGA-FD-A43P-01 8 87563280 87563280 G A CPNE3 Silent p.K340K 0.24 TCGA-FD-A43P-01 8 99761538 99761538 G C STK3 Missense_Mutation p.S134C 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A43P-01 9 100995740 100995740 G C TBC1D2 Missense_Mutation p.Q247E 0.10 tolerated(0.61) benign(0.098) TCGA-FD-A43P-01 9 116171959 116171959 C G POLE3 Missense_Mutation p.D68H 0.27 tolerated(0.05) probably_damaging(1) TCGA-FD-A43P-01 9 117121849 117121849 C G AKNA Intron 0.18 TCGA-FD-A43P-01 9 119568061 119568061 G T ASTN2 Missense_Mutation p.S698Y 0.14 deleterious(0) unknown(0) TCGA-FD-A43P-01 9 123526972 123526972 C G FBXW2 Missense_Mutation p.K410N 0.27 deleterious(0.05) possibly_damaging(0.82) TCGA-FD-A43P-01 9 123907177 123907177 C T CNTRL Silent p.L1036L 0.14 TCGA-FD-A43P-01 9 130493096 130493096 G C TTC16 Missense_Mutation p.Q678H 0.24 tolerated(0.29) benign(0.029) TCGA-FD-A43P-01 9 130569313 130569313 G C FPGS Missense_Mutation p.E150Q 0.17 deleterious(0.01) benign(0.298) TCGA-FD-A43P-01 9 137328325 137328325 C G RXRA Silent p.L418L 0.12 TCGA-FD-A43P-01 9 20949618 20949618 A G FOCAD Missense_Mutation p.I1298V 0.41 tolerated(0.83) benign(0.009) TCGA-FD-A43P-01 9 26905462 26905462 G C PLAA 3'UTR 0.35 TCGA-FD-A43P-01 9 26905570 26905570 G A PLAA Missense_Mutation p.S776F 0.24 deleterious(0.02) benign(0.084) TCGA-FD-A43P-01 9 33056883 33056883 G C SMU1 Missense_Mutation p.S316C 0.17 deleterious(0.02) benign(0.065) TCGA-FD-A43P-01 9 35748498 35748498 C T GBA2 Silent p.L68L 0.09 TCGA-FD-A43P-01 9 37770008 37770008 C G TRMT10B Nonsense_Mutation p.S215* 0.12 TCGA-FD-A43P-01 9 6506090 6506090 G A UHRF2 Missense_Mutation p.D774N 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-FD-A43P-01 9 712706 712706 C T KANK1 Missense_Mutation p.S647F 0.20 deleterious(0) probably_damaging(0.952) TCGA-FD-A43P-01 9 713352 713352 C T KANK1 Silent p.L862L 0.15 TCGA-FD-A43P-01 9 713359 713359 C T KANK1 Nonsense_Mutation p.Q865* 0.16 TCGA-FD-A43P-01 9 79898501 79898501 G A VPS13A Missense_Mutation p.E1092K 0.09 tolerated(0.13) possibly_damaging(0.533) TCGA-FD-A43P-01 9 86281340 86281340 C A UBQLN1 Silent p.L419L 0.23 TCGA-FD-A43P-01 9 86281346 86281346 C T UBQLN1 Missense_Mutation p.M417I 0.21 tolerated(0.5) benign(0.019) TCGA-FD-A43P-01 9 95237059 95237059 C A ASPN Missense_Mutation p.D41Y 0.12 deleterious(0.01) possibly_damaging(0.629) TCGA-FD-A43P-01 X 101768971 101768971 T C TMSB15A 3'UTR 0.22 TCGA-FD-A43P-01 X 146294979 146294979 C G MIR513A1 3'Flank 0.23 TCGA-FD-A43P-01 X 155004261 155004261 G A SPRY3 Missense_Mutation p.G243E 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A43P-01 X 15870491 15870491 C G AP1S2 Missense_Mutation p.D53H 0.15 deleterious(0.01) possibly_damaging(0.879) TCGA-FD-A43P-01 X 29972743 29972743 G A IL1RAPL1 Missense_Mutation p.D436N 0.09 tolerated(0.28) probably_damaging(0.99) TCGA-FD-A43P-01 X 30873254 30873254 T C TAB3 Silent p.S176S 0.80 TCGA-FD-A43P-01 X 37913568 37913568 C G SYTL5 Missense_Mutation p.I74M 0.21 deleterious(0) possibly_damaging(0.761) TCGA-FD-A43P-01 X 44929095 44929096 - GC KDM6A Frame_Shift_Ins p.H733Rfs*23 0.29 TCGA-FD-A43P-01 X 48834740 48834740 C T GRIPAP1 Missense_Mutation p.E680K 0.54 benign(0.108) TCGA-FD-A43P-01 X 54225061 54225061 G A WNK3 Missense_Mutation p.T1700I 0.25 deleterious(0.01) possibly_damaging(0.623) TCGA-FD-A43P-01 X 7177778 7177778 G C STS Missense_Mutation p.Q262H 0.55 tolerated(0.14) probably_damaging(0.998) TCGA-FD-A43P-01 X 73524501 73524501 G T ZCCHC13 Missense_Mutation p.G134C 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A43P-01 X 83128557 83128557 A G CYLC1 Missense_Mutation p.T281A 0.66 tolerated_low_confidence(0.65) unknown(0) TCGA-FD-A43U-01 10 15120528 15120528 T C ACBD7 3'UTR 0.12 TCGA-FD-A43U-01 10 70100979 70100979 G A RUFY2 3'Flank 0.08 TCGA-FD-A43U-01 10 73270923 73270923 A G CDH23-AS1 Intron 0.13 TCGA-FD-A43U-01 11 46333971 46333971 C A CREB3L1 Silent p.L283L 0.16 TCGA-FD-A43U-01 11 59282718 59282718 C T OR4D9 Silent p.D111D 0.05 TCGA-FD-A43U-01 12 67686475 67686475 C G CAND1 Missense_Mutation p.L96V 0.15 tolerated(0.5) benign(0.006) TCGA-FD-A43U-01 12 67691275 67691275 A G CAND1 Missense_Mutation p.R194G 0.11 deleterious(0) probably_damaging(0.961) TCGA-FD-A43U-01 13 108518238 108518238 G T FAM155A Nonsense_Mutation p.S236* 0.17 TCGA-FD-A43U-01 13 77779435 77779435 G A MYCBP2 Missense_Mutation p.L1229F 0.10 possibly_damaging(0.544) TCGA-FD-A43U-01 14 102028826 102028826 C T DIO3 3'UTR 0.28 TCGA-FD-A43U-01 14 69257035 69257036 - GG ZFP36L1 Frame_Shift_Ins p.A78Pfs*3 0.16 TCGA-FD-A43U-01 15 22383399 22383399 A G OR4N4 Silent p.Q309Q 0.08 TCGA-FD-A43U-01 15 74426979 74426979 C G ISLR2 Missense_Mutation p.I628M 0.16 deleterious(0) probably_damaging(0.991) TCGA-FD-A43U-01 16 71026037 71026037 C A HYDIN Missense_Mutation p.A1241S 0.07 benign(0.146) TCGA-FD-A43U-01 16 8891772 8891772 C T PMM2 Silent p.F11F 0.10 TCGA-FD-A43U-01 17 30662407 30662407 C T C17orf75 Missense_Mutation p.V202I 0.26 tolerated(0.25) possibly_damaging(0.546) TCGA-FD-A43U-01 17 53345371 53345371 C T HLF Silent p.D125D 0.23 TCGA-FD-A43U-01 17 76433876 76433876 C T DNAH17 Silent p.E3954E 0.15 TCGA-FD-A43U-01 18 7013898 7013898 G T LAMA1 Missense_Mutation p.D1093E 0.14 tolerated(0.27) benign(0.098) TCGA-FD-A43U-01 19 10624575 10624575 G A S1PR5 Silent p.D371D 0.14 TCGA-FD-A43U-01 19 2917370 2917370 C - ZNF57 Frame_Shift_Del p.P251Hfs*21 0.12 TCGA-FD-A43U-01 19 31768019 31768019 G A TSHZ3 Missense_Mutation p.R894C 0.07 deleterious(0) probably_damaging(0.998) TCGA-FD-A43U-01 19 37383112 37383112 C A ZNF829 Missense_Mutation p.S275I 0.09 tolerated(0.48) probably_damaging(0.983) TCGA-FD-A43U-01 19 4207307 4207307 C T ANKRD24 Missense_Mutation p.R179W 0.09 deleterious(0) possibly_damaging(0.836) TCGA-FD-A43U-01 19 46206195 46206195 T A QPCTL Missense_Mutation p.F346Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-FD-A43U-01 19 51581407 51581407 C A KLK14 Missense_Mutation p.G221W 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A43U-01 19 51914232 51914232 G A SIGLEC10 3'UTR 0.07 TCGA-FD-A43U-01 19 5215324 5215324 G A PTPRS Missense_Mutation p.R1432C 0.21 deleterious(0) probably_damaging(0.998) TCGA-FD-A43U-01 19 53208600 53208600 C T ZNF611 Missense_Mutation p.E570K 0.04 tolerated(0.06) probably_damaging(0.994) TCGA-FD-A43U-01 19 53311280 53311280 T C ZNF28 Missense_Mutation p.Y41C 0.18 deleterious(0.03) probably_damaging(0.964) TCGA-FD-A43U-01 19 55591765 55591765 A G EPS8L1 Intron 0.28 TCGA-FD-A43U-01 1 185878634 185878634 C G HMCN1 Missense_Mutation p.P263A 0.15 probably_damaging(0.956) TCGA-FD-A43U-01 1 226125381 226125381 G T LEFTY2 Silent p.G287G 0.09 TCGA-FD-A43U-01 1 51873977 51873977 T A EPS15 Missense_Mutation p.S435C 0.16 deleterious(0.02) possibly_damaging(0.819) TCGA-FD-A43U-01 1 62740007 62740007 C A KANK4 Missense_Mutation p.V257L 0.09 tolerated(0.46) benign(0) TCGA-FD-A43U-01 20 21335466 21335466 G A XRN2 Missense_Mutation p.R659Q 0.20 tolerated(0.31) possibly_damaging(0.5) TCGA-FD-A43U-01 20 33364161 33364161 C A NCOA6 Missense_Mutation p.R109L 0.14 possibly_damaging(0.476) TCGA-FD-A43U-01 20 45131187 45131187 G A ZNF334 Missense_Mutation p.P264L 0.05 tolerated(0.21) possibly_damaging(0.856) TCGA-FD-A43U-01 20 49218695 49218695 G A FAM65C Silent p.L521L 0.11 TCGA-FD-A43U-01 20 54824542 54824542 C A MC3R Silent p.R215R 0.07 TCGA-FD-A43U-01 22 36623688 36623688 C G APOL2 Missense_Mutation p.R259T 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A43U-01 22 36710274 36710274 C G MYH9 Missense_Mutation p.E490D 0.06 benign(0.293) TCGA-FD-A43U-01 22 39355616 39355616 G A APOBEC3A Silent p.L33L 0.06 TCGA-FD-A43U-01 2 10908879 10908879 G A ATP6V1C2 Missense_Mutation p.R138Q 0.07 deleterious(0) probably_damaging(0.934) TCGA-FD-A43U-01 2 120194538 120194538 C T TMEM37 Missense_Mutation p.T32M 0.07 tolerated(0.06) benign(0.033) TCGA-FD-A43U-01 2 179308096 179308096 G T PRKRA Missense_Mutation p.H138N 0.14 deleterious(0.02) benign(0.365) TCGA-FD-A43U-01 2 228884221 228884221 A T SPHKAP Missense_Mutation p.I450N 0.13 deleterious(0) probably_damaging(0.999) TCGA-FD-A43U-01 2 73493785 73493785 G A FBXO41 Silent p.L311L 0.15 TCGA-FD-A43U-01 2 73493786 73493786 G A FBXO41 Silent p.F310F 0.15 TCGA-FD-A43U-01 2 86701912 86701912 A G KDM3A Missense_Mutation p.K580E 0.11 deleterious(0) possibly_damaging(0.64) TCGA-FD-A43U-01 2 97274330 97274330 C T KANSL3 Silent p.Q552Q 0.19 TCGA-FD-A43U-01 2 97505287 97505287 C T ANKRD23 Silent p.%3D 0.43 TCGA-FD-A43U-01 3 123066746 123066746 C G ADCY5 Missense_Mutation p.R430P 0.09 deleterious(0) probably_damaging(0.954) TCGA-FD-A43U-01 3 123452617 123452617 C T MYLK Missense_Mutation p.R409K 0.14 tolerated(0.47) benign(0.001) TCGA-FD-A43U-01 3 148847537 148847537 G A HPS3 Silent p.P9P 0.13 TCGA-FD-A43U-01 3 15262300 15262300 G A CAPN7 Silent p.L150L 0.14 TCGA-FD-A43U-01 3 170587949 170587949 G A RPL22L1 Missense_Mutation p.P3L 0.14 tolerated(0.07) benign(0.006) TCGA-FD-A43U-01 3 197024064 197024064 C T DLG1 Silent p.R4R 0.14 TCGA-FD-A43U-01 3 197024065 197024065 C T DLG1 Missense_Mutation p.R4Q 0.14 deleterious(0.03) probably_damaging(0.951) TCGA-FD-A43U-01 3 39174683 39174683 G T TTC21A Silent p.A908A 0.24 TCGA-FD-A43U-01 3 49720139 49720139 C T APEH Missense_Mutation p.S618F 0.12 deleterious(0) possibly_damaging(0.869) TCGA-FD-A43U-01 3 49720140 49720140 C T APEH Silent p.S618S 0.13 TCGA-FD-A43U-01 3 58141789 58141789 T G FLNB Missense_Mutation p.V2323G 0.15 deleterious(0.01) probably_damaging(1) TCGA-FD-A43U-01 4 48572873 48572873 C A FRYL Silent p.L989L 0.11 TCGA-FD-A43U-01 4 5862776 5862776 A G CRMP1 Missense_Mutation p.L211P 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A43U-01 4 5862777 5862777 G C CRMP1 Missense_Mutation p.L211V 0.18 tolerated(0.24) benign(0.027) TCGA-FD-A43U-01 4 65188433 65188433 G T TECRL Missense_Mutation p.L137I 0.12 deleterious(0.02) possibly_damaging(0.751) TCGA-FD-A43U-01 4 71508818 71508818 C T ENAM Missense_Mutation p.H559Y 0.09 tolerated(0.14) benign(0.031) TCGA-FD-A43U-01 5 43298662 43298662 C T HMGCS1 Missense_Mutation p.V136I 0.21 deleterious(0.01) benign(0.002) TCGA-FD-A43U-01 6 117861847 117861847 C T DCBLD1 Missense_Mutation p.S373F 0.10 tolerated(0.25) possibly_damaging(0.683) TCGA-FD-A43U-01 6 137323449 137323449 G C IL20RA Missense_Mutation p.P303R 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A43U-01 6 138576674 138576674 C T KIAA1244 Missense_Mutation p.S291L 0.07 tolerated_low_confidence(0.2) benign(0.001) TCGA-FD-A43U-01 6 150719234 150719234 G T IYD Missense_Mutation p.W281C 0.10 deleterious_low_confidence(0) benign(0.001) TCGA-FD-A43U-01 6 30892288 30892288 C T VARS2 Missense_Mutation p.P905L 0.06 tolerated(0.13) benign(0.003) TCGA-FD-A43U-01 6 34100917 34100917 C T GRM4 Silent p.S119S 0.09 TCGA-FD-A43U-01 7 116398618 116398618 C T MET Silent p.F736F 0.13 TCGA-FD-A43U-01 7 142574898 142574898 A G TRPV6 Missense_Mutation p.F162L 0.19 deleterious(0.01) possibly_damaging(0.528) TCGA-FD-A43U-01 7 21939680 21939680 G A DNAH11 Silent p.K4422K 0.07 TCGA-FD-A43U-01 7 25163680 25163680 G T CYCS Missense_Mutation p.T20N 0.17 deleterious(0.02) benign(0.184) TCGA-FD-A43U-01 7 27239707 27239707 G A HOXA13 5'UTR 0.11 TCGA-FD-A43U-01 7 28858838 28858838 G A CREB5 Missense_Mutation p.G490E 0.16 deleterious(0.01) unknown(0) TCGA-FD-A43U-01 7 31683271 31683271 C A CCDC129 Missense_Mutation p.Q789K 0.05 deleterious(0) probably_damaging(0.999) TCGA-FD-A43U-01 7 44802511 44802511 G A ZMIZ2 Missense_Mutation p.R543H 0.07 deleterious(0) probably_damaging(0.999) TCGA-FD-A43U-01 7 81372203 81372203 C T HGF Intron 0.18 TCGA-FD-A43U-01 8 10473957 10473957 G A RP1L1 Silent p.N250N 0.15 TCGA-FD-A43U-01 8 145649082 145649082 T C VPS28 3'UTR 0.16 TCGA-FD-A43U-01 8 41554073 41554073 C T ANK1 Missense_Mutation p.G964D 0.14 deleterious(0) probably_damaging(0.992) TCGA-FD-A43U-01 8 73848282 73848282 G A KCNB2 Missense_Mutation p.R231H 0.06 deleterious(0) benign(0.021) TCGA-FD-A43U-01 8 74495042 74495042 A T STAU2 Missense_Mutation p.S395R 0.10 tolerated(0.12) benign(0.013) TCGA-FD-A43U-01 8 93027008 93027008 G A RUNX1T1 Silent p.G100G 0.14 TCGA-FD-A43U-01 8 95201429 95201429 G T CDH17 Missense_Mutation p.Q46K 0.12 tolerated(0.18) benign(0.146) TCGA-FD-A43U-01 9 104238690 104238690 G A TMEM246 Missense_Mutation p.R229W 0.06 deleterious(0.02) benign(0.431) TCGA-FD-A43U-01 9 134003022 134003022 G A NUP214 Missense_Mutation p.A53T 0.07 unknown(0) TCGA-FD-A43U-01 9 140058396 140058396 C T GRIN1 Intron 0.28 TCGA-FD-A43U-01 9 33469616 33469616 C T NOL6 Missense_Mutation p.R203H 0.07 deleterious(0) probably_damaging(1) TCGA-FD-A43U-01 9 96021712 96021712 C T WNK2 Missense_Mutation p.T961M 0.17 unknown(0) TCGA-FD-A43U-01 X 129281476 129281476 T C AIFM1 Silent p.K199K 0.07 TCGA-FD-A43X-01 10 104492632 104492632 C T SFXN2 Silent p.I246I 0.50 TCGA-FD-A43X-01 10 105128017 105128017 C T TAF5 Missense_Mutation p.P91S 0.45 tolerated_low_confidence(0.44) benign(0.001) TCGA-FD-A43X-01 10 105885385 105885385 C T SFR1 Nonsense_Mutation p.Q221* 0.45 TCGA-FD-A43X-01 10 106982927 106982927 G A SORCS3 Missense_Mutation p.E930K 0.47 tolerated(0.06) benign(0.119) TCGA-FD-A43X-01 10 112340729 112340729 G C SMC3 Missense_Mutation p.R166T 0.51 deleterious(0) possibly_damaging(0.45) TCGA-FD-A43X-01 10 114169417 114169417 G A ACSL5 Missense_Mutation p.E285K 0.19 tolerated(0.14) probably_damaging(0.929) TCGA-FD-A43X-01 10 123310939 123310939 T C FGFR2 Silent p.E163E 0.48 TCGA-FD-A43X-01 10 123683829 123683829 G A ATE1 Missense_Mutation p.S41F 0.47 deleterious(0.01) possibly_damaging(0.694) TCGA-FD-A43X-01 10 134624536 134624536 C G TTC40 Splice_Site p.X2501_splice 0.46 TCGA-FD-A43X-01 10 15634297 15634297 G A ITGA8 Silent p.L740L 0.44 TCGA-FD-A43X-01 10 31138232 31138232 C G ZNF438 Missense_Mutation p.D368H 0.46 deleterious(0) probably_damaging(0.963) TCGA-FD-A43X-01 10 45956740 45956740 C T MARCH8 Missense_Mutation p.R121H 0.49 deleterious(0) probably_damaging(0.985) TCGA-FD-A43X-01 10 47909770 47909770 C T FAM21B Silent p.L289L 0.87 TCGA-FD-A43X-01 10 48428949 48428949 C T GDF10 Missense_Mutation p.A313T 0.23 tolerated(0.38) benign(0.001) TCGA-FD-A43X-01 10 51826512 51826512 C A FAM21A 5'Flank 0.36 TCGA-FD-A43X-01 10 55591271 55591271 C G PCDH15 Missense_Mutation p.D1336H 0.45 deleterious(0) probably_damaging(0.99) TCGA-FD-A43X-01 10 62648934 62648934 C G RHOBTB1 Missense_Mutation p.K164N 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A43X-01 10 76995480 76995480 C G COMTD1 Missense_Mutation p.R39P 0.40 tolerated(0.34) benign(0.001) TCGA-FD-A43X-01 10 7844765 7844765 C T ATP5C1 Nonsense_Mutation p.Q280* 0.50 TCGA-FD-A43X-01 10 91177707 91177707 G A IFIT5 Missense_Mutation p.V251I 0.61 tolerated(0.13) probably_damaging(0.999) TCGA-FD-A43X-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.49 TCGA-FD-A43X-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.50 TCGA-FD-A43X-01 10 96802798 96802798 C T CYP2C8 Missense_Mutation p.R333K 0.46 tolerated(0.06) benign(0.066) TCGA-FD-A43X-01 10 97181762 97181762 C G SORBS1 Missense_Mutation p.G133R 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A43X-01 11 106888480 106888480 G C GUCY1A2 Missense_Mutation p.S101W 0.54 deleterious(0.01) possibly_damaging(0.902) TCGA-FD-A43X-01 11 116732082 116732082 G A SIK3 Missense_Mutation p.S672L 0.42 deleterious_low_confidence(0) benign(0.317) TCGA-FD-A43X-01 11 116732089 116732089 G A SIK3 Nonsense_Mutation p.Q670* 0.45 TCGA-FD-A43X-01 11 117310613 117310613 G T DSCAML1 Missense_Mutation p.T1361K 0.51 deleterious(0) probably_damaging(0.982) TCGA-FD-A43X-01 11 123480538 123480538 G A GRAMD1B Missense_Mutation p.G422R 0.47 deleterious(0.02) probably_damaging(0.973) TCGA-FD-A43X-01 11 123993774 123993774 G A VWA5A Missense_Mutation p.G290R 0.43 deleterious(0.02) possibly_damaging(0.867) TCGA-FD-A43X-01 11 128843907 128843907 C T ARHGAP32 Intron 0.37 TCGA-FD-A43X-01 11 209162 209162 C G RIC8A Intron 0.46 TCGA-FD-A43X-01 11 27679633 27679633 G T BDNF Nonsense_Mutation p.S242* 0.48 TCGA-FD-A43X-01 11 43350367 43350367 C T API5 Missense_Mutation p.H351Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-FD-A43X-01 11 49598163 49598163 G T RP11-707M1.1 RNA 0.39 TCGA-FD-A43X-01 11 49805527 49805527 C T RP11-707M1.1 RNA 0.54 TCGA-FD-A43X-01 11 55111212 55111212 T C OR4A16 Missense_Mutation p.M179T 0.39 deleterious_low_confidence(0.02) benign(0.119) TCGA-FD-A43X-01 11 56756452 56756452 G A OR5AK2 Missense_Mutation p.E22K 0.46 tolerated(0.37) benign(0.002) TCGA-FD-A43X-01 11 5730819 5730819 C T TRIM22 Missense_Mutation p.P480S 0.48 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 11 57311165 57311165 G A SMTNL1 Silent p.V285V 0.56 TCGA-FD-A43X-01 11 57947258 57947258 C G OR9Q1 Silent p.L114L 0.56 TCGA-FD-A43X-01 11 592637 592637 G A PHRF1 Missense_Mutation p.E195K 0.45 deleterious(0) possibly_damaging(0.858) TCGA-FD-A43X-01 11 64122797 64122797 C T CCDC88B Missense_Mutation p.P1411S 0.25 tolerated(0.06) possibly_damaging(0.886) TCGA-FD-A43X-01 11 64335107 64335107 C T SLC22A11 Silent p.F365F 0.42 TCGA-FD-A43X-01 11 64335224 64335224 C G SLC22A11 Missense_Mutation p.I404M 0.46 deleterious(0.04) benign(0.071) TCGA-FD-A43X-01 11 65481086 65481086 C T KAT5 Missense_Mutation p.S188L 0.39 tolerated(0.12) benign(0.108) TCGA-FD-A43X-01 11 66003405 66003405 C A PACS1 Missense_Mutation p.F748L 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A43X-01 11 71941313 71941313 G T INPPL1 Missense_Mutation p.R363L 0.39 deleterious(0.01) possibly_damaging(0.554) TCGA-FD-A43X-01 11 73429730 73429730 C T RAB6A Intron 0.44 TCGA-FD-A43X-01 11 74054024 74054024 C A PGM2L1 Missense_Mutation p.G450W 0.44 deleterious(0) probably_damaging(0.943) TCGA-FD-A43X-01 11 76256956 76256956 C T C11orf30 Missense_Mutation p.S1130L 0.46 tolerated_low_confidence(0.21) benign(0) TCGA-FD-A43X-01 11 76257335 76257335 C T C11orf30 Silent p.I1256I 0.47 TCGA-FD-A43X-01 11 82643221 82643221 G A C11orf82 Missense_Mutation p.E281K 0.44 tolerated(0.13) benign(0.038) TCGA-FD-A43X-01 11 82924004 82924004 C T ANKRD42 Intron 0.57 TCGA-FD-A43X-01 12 105440730 105440730 G A ALDH1L2 Silent p.I568I 0.58 TCGA-FD-A43X-01 12 112451159 112451159 C T ERP29 5'UTR 0.50 TCGA-FD-A43X-01 12 119419747 119419747 C T SRRM4 Silent p.F20F 0.25 TCGA-FD-A43X-01 12 26592073 26592073 C T ITPR2 Silent p.Q2210Q 0.36 TCGA-FD-A43X-01 12 28122626 28122626 C T PTHLH Intron 0.38 TCGA-FD-A43X-01 12 32369352 32369352 G A BICD1 Missense_Mutation p.E129K 0.59 deleterious(0) probably_damaging(0.963) TCGA-FD-A43X-01 12 32861134 32861135 AG - DNM1L Frame_Shift_Del p.E116Kfs*6 0.36 TCGA-FD-A43X-01 12 42631500 42631500 G T YAF2 Nonsense_Mutation p.S18* 0.33 TCGA-FD-A43X-01 12 49171950 49171950 G A ADCY6 Nonsense_Mutation p.Q319* 0.44 TCGA-FD-A43X-01 12 53237983 53237983 G A KRT78 Missense_Mutation p.S314F 0.36 deleterious(0) possibly_damaging(0.815) TCGA-FD-A43X-01 12 56030900 56030900 T C OR10P1 Silent p.T75T 0.56 TCGA-FD-A43X-01 12 56498419 56498419 C A PA2G4 5'UTR 0.56 TCGA-FD-A43X-01 12 56505038 56505038 C G PA2G4 Missense_Mutation p.P337R 0.51 deleterious(0.01) possibly_damaging(0.715) TCGA-FD-A43X-01 12 6091021 6091021 G A VWF Silent p.P2406P 0.54 TCGA-FD-A43X-01 12 6936107 6936107 G A GPR162 Missense_Mutation p.R502Q 0.55 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-FD-A43X-01 12 7945633 7945633 C T NANOG Missense_Mutation p.A80V 0.30 tolerated(0.51) benign(0.002) TCGA-FD-A43X-01 12 8234870 8234870 G A NECAP1 5'UTR 0.33 TCGA-FD-A43X-01 12 88479849 88479849 T C CEP290 Silent p.L1468L 0.72 TCGA-FD-A43X-01 13 103286387 103286387 G A TPP2 Silent p.L444L 0.11 TCGA-FD-A43X-01 13 113915001 113915001 G A CUL4A Missense_Mutation p.M704I 0.46 deleterious(0) probably_damaging(0.99) TCGA-FD-A43X-01 13 19751448 19751448 G A TUBA3C Silent p.T225T 0.42 TCGA-FD-A43X-01 13 36699972 36699972 C A DCLK1 Missense_Mutation p.L101F 0.55 deleterious(0) unknown(0) TCGA-FD-A43X-01 13 37393936 37393936 G T RFXAP Nonsense_Mutation p.E148* 0.41 TCGA-FD-A43X-01 13 37678383 37678383 G A CSNK1A1L Silent p.N337N 0.54 TCGA-FD-A43X-01 13 39612685 39612685 C T NHLRC3 5'UTR 0.52 TCGA-FD-A43X-01 13 50087246 50087246 G C PHF11 Missense_Mutation p.D90H 0.17 deleterious(0.02) probably_damaging(0.961) TCGA-FD-A43X-01 13 58208006 58208006 C T PCDH17 Silent p.I442I 0.48 TCGA-FD-A43X-01 13 72049886 72049886 G T DACH1 Missense_Mutation p.Q658K 0.40 possibly_damaging(0.771) TCGA-FD-A43X-01 14 102550760 102550761 CA - HSP90AA1 Nonsense_Mutation p.C496* 0.40 TCGA-FD-A43X-01 14 105477567 105477567 C T CDCA4 Missense_Mutation p.V234M 0.44 deleterious(0) possibly_damaging(0.65) TCGA-FD-A43X-01 14 20295841 20295842 - C OR4N2 Frame_Shift_Ins p.R80Pfs*42 0.24 TCGA-FD-A43X-01 14 21830970 21830970 G A SUPT16H Missense_Mutation p.H550Y 0.48 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 14 22471899 22471899 T C TRAV18 Missense_Mutation p.C108R 0.62 deleterious(0) probably_damaging(0.994) TCGA-FD-A43X-01 14 22591480 22591480 G A TRAV26-1 5'UTR 0.54 TCGA-FD-A43X-01 14 22955247 22955247 G C TRAJ52 Silent p.L11L 0.52 TCGA-FD-A43X-01 14 23445991 23445991 C T AJUBA Intron 0.54 TCGA-FD-A43X-01 14 23776975 23776975 G A BCL2L2-PABPN1 5'UTR 0.22 TCGA-FD-A43X-01 14 23898246 23898246 C T MYH7 Missense_Mutation p.R442H 0.47 deleterious(0.01) probably_damaging(0.985) TCGA-FD-A43X-01 14 52509545 52509545 A G NID2 Missense_Mutation p.C512R 0.46 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 14 65031549 65031549 C G PPP1R36 Nonsense_Mutation p.S88* 0.48 TCGA-FD-A43X-01 14 72138391 72138391 G A SIPA1L1 Silent p.E937E 0.27 TCGA-FD-A43X-01 14 75130426 75130426 G C AREL1 Silent p.L823L 0.37 TCGA-FD-A43X-01 14 75179794 75179794 C T AC007956.1 Missense_Mutation p.G3R 0.43 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-FD-A43X-01 14 78139990 78139990 G A ALKBH1 3'UTR 0.50 TCGA-FD-A43X-01 14 91338436 91338436 G C RPS6KA5 Missense_Mutation p.F797L 0.41 tolerated_low_confidence(0.13) benign(0.021) TCGA-FD-A43X-01 15 101112167 101112167 G A LINS Silent p.F442F 0.29 TCGA-FD-A43X-01 15 34103188 34103188 G C RYR3 Missense_Mutation p.D3403H 0.26 possibly_damaging(0.897) TCGA-FD-A43X-01 15 34112007 34112007 A G RYR3 Missense_Mutation p.K3586R 0.63 benign(0.41) TCGA-FD-A43X-01 15 39910416 39910416 G A FSIP1 Nonsense_Mutation p.Q407* 0.25 TCGA-FD-A43X-01 15 40212135 40212135 G A GPR176 Silent p.L31L 0.85 TCGA-FD-A43X-01 15 40633063 40633063 G A C15orf52 Silent p.L30L 0.26 TCGA-FD-A43X-01 15 42749499 42749499 C G ZNF106 5'UTR 0.68 TCGA-FD-A43X-01 15 43622106 43622106 G C LCMT2 Silent p.L194L 0.17 TCGA-FD-A43X-01 15 52488661 52488661 C T MYO5C Missense_Mutation p.E1614K 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 15 59499499 59499499 C T LDHAL6B Silent p.F120F 0.30 TCGA-FD-A43X-01 15 62325658 62325658 G A VPS13C Nonsense_Mutation p.Q123* 0.64 TCGA-FD-A43X-01 15 64668995 64668995 C T KIAA0101 Silent p.E79E 0.60 TCGA-FD-A43X-01 15 65687479 65687479 C G IGDCC4 Missense_Mutation p.G510A 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 15 69732772 69732772 G A KIF23 Silent p.R671R 0.54 TCGA-FD-A43X-01 15 70346823 70346823 C T TLE3 Missense_Mutation p.D597N 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-FD-A43X-01 15 74336951 74336951 C T PML Missense_Mutation p.R751C 0.38 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 15 78834986 78834986 G T PSMA4 Nonsense_Mutation p.E70* 0.34 TCGA-FD-A43X-01 15 80847412 80847412 C G ARNT2 Missense_Mutation p.L366V 0.66 deleterious(0.03) benign(0.049) TCGA-FD-A43X-01 15 84581918 84581918 G A ADAMTSL3 Missense_Mutation p.R592H 0.55 deleterious(0.01) probably_damaging(0.989) TCGA-FD-A43X-01 16 20844402 20844402 C G AC004381.6 Missense_Mutation p.S447C 0.43 deleterious(0) probably_damaging(0.928) TCGA-FD-A43X-01 16 22545321 22545321 C G NPIPB5 Silent p.L339L 0.20 TCGA-FD-A43X-01 16 27503822 27503822 C T GTF3C1 Silent p.L996L 0.54 TCGA-FD-A43X-01 16 2812136 2812136 C T SRRM2 Missense_Mutation p.S536F 0.43 benign(0.184) TCGA-FD-A43X-01 16 4867693 4867693 C G GLYR1 Missense_Mutation p.G271A 0.39 deleterious(0) possibly_damaging(0.889) TCGA-FD-A43X-01 16 50821713 50821713 G A CYLD Silent p.L686L 0.53 TCGA-FD-A43X-01 16 58031152 58031152 C T ZNF319 Missense_Mutation p.E340K 0.46 deleterious(0) probably_damaging(0.918) TCGA-FD-A43X-01 16 58071466 58071466 G C MMP15 Missense_Mutation p.E85Q 0.49 tolerated(0.22) possibly_damaging(0.574) TCGA-FD-A43X-01 16 58076269 58076269 C G MMP15 Missense_Mutation p.F433L 0.17 deleterious(0.01) benign(0.286) TCGA-FD-A43X-01 16 66884515 66884515 G A CA7 Missense_Mutation p.D104N 0.47 tolerated(0.1) benign(0) TCGA-FD-A43X-01 16 67400992 67400992 T C LRRC36 Missense_Mutation p.V276A 0.57 deleterious(0) benign(0.128) TCGA-FD-A43X-01 16 69776432 69776432 G A NOB1 Nonsense_Mutation p.Q348* 0.55 TCGA-FD-A43X-01 16 74685892 74685892 G C RFWD3 Missense_Mutation p.S216C 0.64 deleterious(0) probably_damaging(0.935) TCGA-FD-A43X-01 16 75252903 75252903 G A CTRB1 5'UTR 0.38 TCGA-FD-A43X-01 16 75669580 75669580 C T KARS Missense_Mutation p.E293K 0.45 deleterious(0.01) possibly_damaging(0.772) TCGA-FD-A43X-01 16 87448115 87448115 G A ZCCHC14 Missense_Mutation p.S366L 0.27 tolerated(0.15) benign(0.194) TCGA-FD-A43X-01 16 88871854 88871854 G A CDT1 Silent p.E165E 0.26 TCGA-FD-A43X-01 16 89349156 89349156 G A ANKRD11 Missense_Mutation p.S1265F 0.48 benign(0.035) TCGA-FD-A43X-01 16 89651946 89651946 G C CPNE7 Missense_Mutation p.E297D 0.60 tolerated(0.2) benign(0.082) TCGA-FD-A43X-01 17 10415816 10415816 G A MYH1 Silent p.I352I 0.96 TCGA-FD-A43X-01 17 26667448 26667448 G A TNFAIP1 Missense_Mutation p.E107K 0.68 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 17 29623198 29623198 G A OMG Missense_Mutation p.S51F 0.11 tolerated(0.69) possibly_damaging(0.478) TCGA-FD-A43X-01 17 31351025 31351025 C T ASIC2 Silent p.L401L 0.56 TCGA-FD-A43X-01 17 39021105 39021105 C T KRT12 Missense_Mutation p.E254K 0.33 deleterious(0) probably_damaging(0.999) TCGA-FD-A43X-01 17 42475104 42475104 G A GPATCH8 Silent p.I1447I 0.28 TCGA-FD-A43X-01 17 45668110 45668110 G A NPEPPS Missense_Mutation p.E375K 0.25 deleterious(0) probably_damaging(0.992) TCGA-FD-A43X-01 17 45669352 45669352 G A NPEPPS Missense_Mutation p.E431K 0.28 deleterious(0) possibly_damaging(0.687) TCGA-FD-A43X-01 17 56649313 56649313 G C TEX14 Missense_Mutation p.S1275C 0.58 deleterious(0.03) benign(0.062) TCGA-FD-A43X-01 17 59857658 59857658 G C BRIP1 Missense_Mutation p.I633M 0.28 deleterious(0) probably_damaging(0.971) TCGA-FD-A43X-01 17 61271410 61271410 C A TANC2 Silent p.L90L 0.19 TCGA-FD-A43X-01 17 67132309 67132309 G C ABCA6 Missense_Mutation p.I128M 0.69 deleterious(0.01) probably_damaging(0.961) TCGA-FD-A43X-01 17 7161985 7161985 G A ELP5 Missense_Mutation p.D240N 0.21 deleterious(0.03) possibly_damaging(0.621) TCGA-FD-A43X-01 17 7339222 7339222 G A TMEM102 Nonsense_Mutation p.W11* 0.96 TCGA-FD-A43X-01 17 74077588 74077588 C T EXOC7 3'Flank 0.07 TCGA-FD-A43X-01 17 77078200 77078200 C G ENGASE Intron 0.15 TCGA-FD-A43X-01 17 7724658 7724658 G A DNAH2 Missense_Mutation p.E3705K 0.93 possibly_damaging(0.905) TCGA-FD-A43X-01 17 77987224 77987224 C G TBC1D16 Missense_Mutation p.K41N 0.69 deleterious(0) probably_damaging(0.999) TCGA-FD-A43X-01 17 79287602 79287602 C T TMEM105 Missense_Mutation p.R80K 0.67 deleterious_low_confidence(0) benign(0.14) TCGA-FD-A43X-01 17 8707356 8707356 C A PIK3R6 Intron 0.95 TCGA-FD-A43X-01 18 13387564 13387564 G A LDLRAD4 5'UTR 0.39 TCGA-FD-A43X-01 18 2740730 2740730 C T SMCHD1 Nonsense_Mutation p.Q1182* 0.28 TCGA-FD-A43X-01 18 55226416 55226416 C T FECH Silent p.E261E 0.42 TCGA-FD-A43X-01 18 56202294 56202294 C G ALPK2 Missense_Mutation p.E1709Q 0.48 deleterious(0.04) benign(0.346) TCGA-FD-A43X-01 18 72776125 72776125 G A ZNF407 Missense_Mutation p.E2150K 0.50 deleterious(0) probably_damaging(0.978) TCGA-FD-A43X-01 19 11221357 11221357 G T LDLR Missense_Mutation p.G324C 0.41 deleterious(0) probably_damaging(0.991) TCGA-FD-A43X-01 19 13862566 13862566 C G CCDC130 5'UTR 0.18 TCGA-FD-A43X-01 19 16545237 16545237 G A EPS15L1 Missense_Mutation p.S146F 0.35 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 19 16547773 16547773 G C EPS15L1 Missense_Mutation p.S116C 0.38 deleterious(0.01) possibly_damaging(0.834) TCGA-FD-A43X-01 19 18677976 18677976 G C KXD1 Missense_Mutation p.E97Q 0.29 tolerated(0.13) possibly_damaging(0.799) TCGA-FD-A43X-01 19 19626891 19626891 C T NDUFA13 5'UTR 0.28 TCGA-FD-A43X-01 19 20308220 20308220 G A ZNF486 Missense_Mutation p.R234K 0.30 deleterious(0.04) benign(0.016) TCGA-FD-A43X-01 19 36106234 36106234 G A HAUS5 Missense_Mutation p.R144Q 0.58 tolerated(1) benign(0.004) TCGA-FD-A43X-01 19 36341295 36341295 C G NPHS1 Missense_Mutation p.Q193H 0.34 deleterious(0) benign(0.393) TCGA-FD-A43X-01 19 3653353 3653353 C T PIP5K1C Missense_Mutation p.E286K 0.05 tolerated(0.06) possibly_damaging(0.86) TCGA-FD-A43X-01 19 38102674 38102674 C T ZNF540 Missense_Mutation p.H165Y 0.17 tolerated(0.2) benign(0) TCGA-FD-A43X-01 19 38851437 38851437 C G CATSPERG Missense_Mutation p.L612V 0.33 deleterious(0) possibly_damaging(0.567) TCGA-FD-A43X-01 19 39127542 39127542 C T EIF3K Silent p.I213I 0.18 TCGA-FD-A43X-01 19 40023495 40023495 G A EID2B 5'Flank 0.38 TCGA-FD-A43X-01 19 4305963 4305963 C T FSD1 Silent p.I12I 0.18 TCGA-FD-A43X-01 19 43348731 43348731 G T PSG10P RNA 0.53 TCGA-FD-A43X-01 19 48832670 48832670 C T EMP3 Silent p.F81F 0.59 TCGA-FD-A43X-01 19 48868997 48868997 C T SYNGR4 5'UTR 0.53 TCGA-FD-A43X-01 19 49631272 49631272 G C PPFIA3 Missense_Mutation p.E48Q 0.53 deleterious(0.03) possibly_damaging(0.814) TCGA-FD-A43X-01 19 51874975 51874975 G C NKG7 3'UTR 0.60 TCGA-FD-A43X-01 19 51995063 51995063 C T SIGLEC12 Silent p.P540P 0.53 TCGA-FD-A43X-01 19 53619628 53619628 G A ZNF415 Missense_Mutation p.S25F 0.41 deleterious(0) benign(0.163) TCGA-FD-A43X-01 19 53667757 53667757 G C ZNF665 Silent p.V662V 0.34 TCGA-FD-A43X-01 19 53667911 53667911 G A ZNF665 Missense_Mutation p.S611L 0.35 deleterious(0.03) probably_damaging(0.969) TCGA-FD-A43X-01 19 53668482 53668482 G A ZNF665 Nonsense_Mutation p.R421* 0.28 TCGA-FD-A43X-01 19 53668485 53668485 G C ZNF665 Missense_Mutation p.H420D 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A43X-01 19 53668734 53668734 G C ZNF665 Missense_Mutation p.Q337E 0.35 tolerated(0.12) benign(0.248) TCGA-FD-A43X-01 19 53668842 53668842 G C ZNF665 Missense_Mutation p.Q301E 0.31 tolerated(0.09) benign(0.026) TCGA-FD-A43X-01 19 53669014 53669014 G T ZNF665 Missense_Mutation p.F243L 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-FD-A43X-01 19 53669303 53669303 G T ZNF665 Nonsense_Mutation p.S147* 0.37 TCGA-FD-A43X-01 19 56300270 56300270 C G NLRP11 Missense_Mutation p.E920Q 0.16 deleterious(0.03) benign(0.053) TCGA-FD-A43X-01 19 56419205 56419205 C T NLRP13 Silent p.L800L 0.39 TCGA-FD-A43X-01 19 7600833 7600833 G A PNPLA6 Missense_Mutation p.M62I 0.32 tolerated(0.1) possibly_damaging(0.584) TCGA-FD-A43X-01 19 9362683 9362683 C G OR7E24 Missense_Mutation p.L322V 0.42 tolerated(0.05) benign(0.027) TCGA-FD-A43X-01 19 971892 971892 C T ARID3A Nonsense_Mutation p.Q537* 0.32 TCGA-FD-A43X-01 19 972046 972046 C G ARID3A Nonsense_Mutation p.S588* 0.40 TCGA-FD-A43X-01 1 109268501 109268501 A T FNDC7 Missense_Mutation p.H329L 0.49 tolerated(0.33) possibly_damaging(0.735) TCGA-FD-A43X-01 1 110882102 110882102 G C RBM15 Silent p.T25T 0.52 TCGA-FD-A43X-01 1 11147910 11147910 C T EXOSC10 Missense_Mutation p.V298M 0.46 tolerated(0.11) possibly_damaging(0.655) TCGA-FD-A43X-01 1 11345735 11345735 C T UBIAD1 Silent p.L188L 0.48 TCGA-FD-A43X-01 1 115454166 115454166 G C SYCP1 Missense_Mutation p.E498Q 0.58 tolerated(1) benign(0.002) TCGA-FD-A43X-01 1 11718647 11718647 G A FBXO44 Silent p.L150L 0.51 TCGA-FD-A43X-01 1 118486190 118486190 C T WDR3 Silent p.F423F 0.37 TCGA-FD-A43X-01 1 12443125 12443125 G C VPS13D Missense_Mutation p.E3761Q 0.51 probably_damaging(0.986) TCGA-FD-A43X-01 1 144053551 144053551 C G SRGAP2B RNA 0.42 TCGA-FD-A43X-01 1 144921878 144921878 T C PDE4DIP Missense_Mutation p.H384R 0.20 tolerated(0.35) benign(0.001) TCGA-FD-A43X-01 1 144931522 144931522 G A PDE4DIP Intron 0.24 TCGA-FD-A43X-01 1 149895601 149895601 G A SF3B4 Missense_Mutation p.P370S 0.76 tolerated_low_confidence(0.24) unknown(0) TCGA-FD-A43X-01 1 150799060 150799060 G A ARNT Missense_Mutation p.H401Y 0.71 deleterious(0.01) probably_damaging(0.983) TCGA-FD-A43X-01 1 152287839 152287839 C G FLG Missense_Mutation p.E32Q 0.20 possibly_damaging(0.757) TCGA-FD-A43X-01 1 153391682 153391682 A G S100A7A Missense_Mutation p.K68R 0.79 deleterious(0.05) benign(0.003) TCGA-FD-A43X-01 1 153730232 153730232 C T INTS3 Missense_Mutation p.T381M 0.12 deleterious(0) probably_damaging(0.988) TCGA-FD-A43X-01 1 154962920 154962920 G A FLAD1 Silent p.R490R 0.25 TCGA-FD-A43X-01 1 155233140 155233140 C T CLK2 Missense_Mutation p.E456K 0.24 tolerated(0.23) possibly_damaging(0.817) TCGA-FD-A43X-01 1 156737729 156737729 C G PRCC Missense_Mutation p.Q56E 0.69 tolerated_low_confidence(0.13) unknown(0) TCGA-FD-A43X-01 1 157545486 157545486 C A FCRL4 Intron 0.16 TCGA-FD-A43X-01 1 157766903 157766903 A G FCRL1 Silent p.H402H 0.78 TCGA-FD-A43X-01 1 15855611 15855611 G C DNAJC16 Missense_Mutation p.R4T 0.45 deleterious_low_confidence(0.01) benign(0.005) TCGA-FD-A43X-01 1 158645975 158645975 A T SPTA1 Silent p.R356R 0.76 TCGA-FD-A43X-01 1 16262029 16262029 G A SPEN Silent p.V3098V 0.42 TCGA-FD-A43X-01 1 16534659 16534659 G A ARHGEF19 Silent p.V158V 0.41 TCGA-FD-A43X-01 1 171765962 171765962 G C METTL13 3'UTR 0.68 TCGA-FD-A43X-01 1 173916674 173916674 C G RC3H1 Missense_Mutation p.R857T 0.23 deleterious(0) probably_damaging(0.996) TCGA-FD-A43X-01 1 182847159 182847159 G C DHX9 Missense_Mutation p.Q734H 0.16 deleterious(0) probably_damaging(0.979) TCGA-FD-A43X-01 1 186934581 186934581 C G PLA2G4A Silent p.V540V 0.21 TCGA-FD-A43X-01 1 200534684 200534684 C T KIF14 Missense_Mutation p.E1259K 0.13 tolerated(0.23) possibly_damaging(0.641) TCGA-FD-A43X-01 1 201052309 201052309 G A CACNA1S Silent p.L458L 0.09 TCGA-FD-A43X-01 1 212798591 212798591 G A FAM71A Silent p.L124L 0.20 TCGA-FD-A43X-01 1 231471482 231471482 C T EXOC8 Silent p.K670K 0.77 TCGA-FD-A43X-01 1 235345306 235345306 C G ARID4B Missense_Mutation p.E976D 0.73 tolerated_low_confidence(0.3) benign(0.004) TCGA-FD-A43X-01 1 24106426 24106426 G A PITHD1 Missense_Mutation p.M105I 0.40 tolerated(0.4) benign(0.015) TCGA-FD-A43X-01 1 27427035 27427035 C T SLC9A1 Silent p.L737L 0.43 TCGA-FD-A43X-01 1 29528511 29528511 C G MECR Missense_Mutation p.E234Q 0.19 deleterious(0.03) benign(0.083) TCGA-FD-A43X-01 1 36748211 36748211 C G THRAP3 Nonsense_Mutation p.S16* 0.47 TCGA-FD-A43X-01 1 43890452 43890452 C T SZT2 Intron 0.43 TCGA-FD-A43X-01 1 45504700 45504700 C T ZSWIM5 Nonsense_Mutation p.W601* 0.50 TCGA-FD-A43X-01 1 55148378 55148378 G A MROH7 Missense_Mutation p.D811N 0.48 tolerated(0.08) possibly_damaging(0.888) TCGA-FD-A43X-01 1 55607317 55607317 C T USP24 Missense_Mutation p.V908I 0.39 tolerated(0.17) benign(0.01) TCGA-FD-A43X-01 1 57169957 57169957 G C PRKAA2 Missense_Mutation p.E368Q 0.24 tolerated(0.11) probably_damaging(0.947) TCGA-FD-A43X-01 1 6604980 6604980 C G NOL9 Missense_Mutation p.E295Q 0.47 deleterious(0.01) possibly_damaging(0.886) TCGA-FD-A43X-01 1 66798096 66798096 C T PDE4B Intron 0.54 TCGA-FD-A43X-01 1 78183627 78183627 G T USP33 Missense_Mutation p.L646I 0.52 tolerated(0.06) benign(0.053) TCGA-FD-A43X-01 1 7880243 7880243 C T PER3 Missense_Mutation p.S568F 0.59 deleterious(0) possibly_damaging(0.831) TCGA-FD-A43X-01 1 7886608 7886608 G A PER3 Missense_Mutation p.E668K 0.32 deleterious(0.03) possibly_damaging(0.636) TCGA-FD-A43X-01 1 7886665 7886665 G C PER3 Missense_Mutation p.E687Q 0.37 deleterious(0) possibly_damaging(0.727) TCGA-FD-A43X-01 1 7887272 7887272 G A PER3 Silent p.S753S 0.31 TCGA-FD-A43X-01 1 7887870 7887870 G C PER3 Missense_Mutation p.E953Q 0.29 tolerated(0.08) benign(0.004) TCGA-FD-A43X-01 1 897011 897011 G A KLHL17 Missense_Mutation p.E124K 0.22 deleterious(0.02) benign(0.32) TCGA-FD-A43X-01 1 9324097 9324097 C T H6PD Silent p.F515F 0.25 TCGA-FD-A43X-01 1 9324432 9324432 C G H6PD Nonsense_Mutation p.S627* 0.18 TCGA-FD-A43X-01 1 9324568 9324568 C A H6PD Silent p.I672I 0.24 TCGA-FD-A43X-01 1 99772407 99772407 C T LPPR4 Silent p.S711S 0.53 TCGA-FD-A43X-01 20 19662607 19662607 C T SLC24A3 Silent p.C291C 0.31 TCGA-FD-A43X-01 20 21687270 21687270 C A PAX1 Missense_Mutation p.L161M 0.19 deleterious(0.02) probably_damaging(1) TCGA-FD-A43X-01 20 22562945 22562945 G C FOXA2 Missense_Mutation p.S312W 0.32 deleterious(0.04) possibly_damaging(0.857) TCGA-FD-A43X-01 20 30732891 30732891 C G TM9SF4 Intron 0.51 TCGA-FD-A43X-01 20 34241294 34241294 C G RBM12 Missense_Mutation p.G651R 0.70 tolerated_low_confidence(0.13) probably_damaging(0.963) TCGA-FD-A43X-01 20 34241363 34241363 C G RBM12 Missense_Mutation p.E628Q 0.67 tolerated(0.06) probably_damaging(0.995) TCGA-FD-A43X-01 20 3675379 3675379 G C SIGLEC1 Missense_Mutation p.H959D 0.63 deleterious(0) probably_damaging(0.997) TCGA-FD-A43X-01 20 42144787 42144787 G A L3MBTL1 Missense_Mutation p.E256K 0.21 tolerated(0.17) benign(0.219) TCGA-FD-A43X-01 20 43348661 43348661 G A WISP2 Missense_Mutation p.E62K 0.19 deleterious(0) probably_damaging(0.99) TCGA-FD-A43X-01 20 56093720 56093720 T A CTCFL Intron 0.34 TCGA-FD-A43X-01 20 62422018 62422018 G A ZBTB46 Silent p.C31C 0.10 TCGA-FD-A43X-01 21 11039230 11039230 T C BAGE2 RNA 0.16 TCGA-FD-A43X-01 21 33371051 33371051 C T HUNK Missense_Mutation p.R567C 0.92 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-FD-A43X-01 21 41711077 41711077 G A DSCAM Silent p.V492V 0.95 TCGA-FD-A43X-01 22 17280695 17280695 G C XKR3 Missense_Mutation p.I185M 0.43 deleterious(0) benign(0.256) TCGA-FD-A43X-01 22 19470303 19470303 G C CDC45 Missense_Mutation p.D99H 0.52 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 22 21327646 21327646 G A AIFM3 Missense_Mutation p.E28K 0.42 tolerated_low_confidence(0.22) benign(0.445) TCGA-FD-A43X-01 22 26164652 26164652 G C MYO18B Missense_Mutation p.E257Q 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-FD-A43X-01 22 38506555 38506555 G A BAIAP2L2 5'UTR 0.47 TCGA-FD-A43X-01 22 41188638 41188638 G C SLC25A17 Silent p.L75L 0.22 TCGA-FD-A43X-01 22 42537260 42537260 C T NDUFA6-AS1 3'Flank 0.19 TCGA-FD-A43X-01 2 108489210 108489210 G A RGPD4 Missense_Mutation p.E1584K 0.50 tolerated(0.3) benign(0.141) TCGA-FD-A43X-01 2 135920593 135920593 T G RAB3GAP1 Missense_Mutation p.I843S 0.48 deleterious(0) possibly_damaging(0.852) TCGA-FD-A43X-01 2 138414437 138414437 G C THSD7B Missense_Mutation p.E1396Q 0.42 tolerated(0.16) unknown(0) TCGA-FD-A43X-01 2 141215155 141215155 C T LRP1B Missense_Mutation p.D3231N 0.47 possibly_damaging(0.539) TCGA-FD-A43X-01 2 15629085 15629085 G A NBAS Missense_Mutation p.S339L 0.41 deleterious(0) probably_damaging(0.998) TCGA-FD-A43X-01 2 15629087 15629087 G A NBAS Silent p.F338F 0.41 TCGA-FD-A43X-01 2 163167353 163167353 G A IFIH1 Silent p.L182L 0.59 TCGA-FD-A43X-01 2 1677508 1677508 C T PXDN Missense_Mutation p.E309K 0.55 tolerated(0.18) possibly_damaging(0.461) TCGA-FD-A43X-01 2 170857818 170857818 C T UBR3 Missense_Mutation p.S1308L 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-FD-A43X-01 2 173782571 173782571 T C RAPGEF4 Silent p.Y162Y 0.46 TCGA-FD-A43X-01 2 174231117 174231117 G A CDCA7 Missense_Mutation p.R381Q 0.43 deleterious(0) probably_damaging(0.991) TCGA-FD-A43X-01 2 178936438 178936438 C T PDE11A Missense_Mutation p.V243M 0.44 deleterious(0) probably_damaging(0.992) TCGA-FD-A43X-01 2 179482790 179482790 A T TTN Nonsense_Mutation p.L15763* 0.49 TCGA-FD-A43X-01 2 185803729 185803729 C T ZNF804A Silent p.V1202V 0.49 TCGA-FD-A43X-01 2 210940388 210940388 A G KANSL1L Missense_Mutation p.L548P 0.53 deleterious(0) benign(0.253) TCGA-FD-A43X-01 2 211306127 211306127 C A LANCL1 Nonsense_Mutation p.E150* 0.50 TCGA-FD-A43X-01 2 220073293 220073293 G C ZFAND2B Splice_Site p.X197_splice 0.43 TCGA-FD-A43X-01 2 234420381 234420381 G A USP40 Missense_Mutation p.L845F 0.24 tolerated(0.46) benign(0.012) TCGA-FD-A43X-01 2 238283106 238283106 G - COL6A3 Frame_Shift_Del p.R1210Afs*4 0.29 TCGA-FD-A43X-01 2 238999898 238999898 G C SCLY Intron 0.36 TCGA-FD-A43X-01 2 26174762 26174762 G C KIF3C Missense_Mutation p.I634M 0.37 probably_damaging(0.993) TCGA-FD-A43X-01 2 39234255 39234255 C T SOS1 Missense_Mutation p.E864K 0.55 deleterious(0.05) probably_damaging(0.977) TCGA-FD-A43X-01 2 50780089 50780089 G T NRXN1 Silent p.I505I 0.45 TCGA-FD-A43X-01 2 61236138 61236138 C T PUS10 Missense_Mutation p.E47K 0.44 tolerated(0.05) benign(0.134) TCGA-FD-A43X-01 2 71883290 71883290 A C DYSF Splice_Site p.X1543_splice 0.44 TCGA-FD-A43X-01 2 73518804 73518804 G C EGR4 Missense_Mutation p.I517M 0.41 deleterious(0) probably_damaging(0.993) TCGA-FD-A43X-01 2 74594514 74594514 C G DCTN1 Missense_Mutation p.E740Q 0.49 tolerated(0.12) probably_damaging(0.977) TCGA-FD-A43X-01 2 79347950 79347950 G A REG1A 5'UTR 0.41 TCGA-FD-A43X-01 3 112064109 112064109 C T CD200 Missense_Mutation p.S157L 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-FD-A43X-01 3 11300726 11300726 G A HRH1 Translation_Start_Site p.M1? 0.51 deleterious_low_confidence(0.02) benign(0.07) TCGA-FD-A43X-01 3 125032343 125032343 G C ZNF148 Missense_Mutation p.Q48E 0.20 tolerated(1) benign(0.001) TCGA-FD-A43X-01 3 128755962 128755962 T A EFCC1 Splice_Site p.X530_splice 0.34 TCGA-FD-A43X-01 3 147128781 147128781 C T ZIC1 Silent p.R294R 0.12 TCGA-FD-A43X-01 3 147128850 147128850 G C ZIC1 Missense_Mutation p.E317D 0.46 deleterious(0) benign(0.248) TCGA-FD-A43X-01 3 14861711 14861711 C A FGD5 Missense_Mutation p.P378Q 0.48 tolerated_low_confidence(0.06) benign(0.388) TCGA-FD-A43X-01 3 183699591 183699591 C A ABCC5 Missense_Mutation p.K357N 0.36 deleterious(0.05) possibly_damaging(0.734) TCGA-FD-A43X-01 3 186360338 186360338 C G FETUB Missense_Mutation p.L139V 0.44 tolerated(0.07) possibly_damaging(0.46) TCGA-FD-A43X-01 3 195517669 195517669 G A MUC4 Missense_Mutation p.S261L 0.54 unknown(0) TCGA-FD-A43X-01 3 196089511 196089511 G C UBXN7 Missense_Mutation p.I294M 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A43X-01 3 32533338 32533338 G A CMTM6 Missense_Mutation p.S60L 0.25 deleterious(0.02) possibly_damaging(0.828) TCGA-FD-A43X-01 3 36873094 36873094 G T TRANK1 Silent p.V2616V 0.12 TCGA-FD-A43X-01 3 38175473 38175474 - C ACAA1 Frame_Shift_Ins p.A98Gfs*12 0.32 TCGA-FD-A43X-01 3 45132940 45132940 G T CDCP1 Missense_Mutation p.S573Y 0.59 deleterious(0) probably_damaging(0.984) TCGA-FD-A43X-01 3 49053945 49053945 C G DALRD3 Splice_Site p.X355_splice 0.51 TCGA-FD-A43X-01 3 49775649 49775649 C G IP6K1 Missense_Mutation p.E144Q 0.48 tolerated(0.21) benign(0.287) TCGA-FD-A43X-01 3 52547734 52547734 G A STAB1 Missense_Mutation p.R1091K 0.11 tolerated(0.92) benign(0.004) TCGA-FD-A43X-01 4 115891668 115891668 A G NDST4 Missense_Mutation p.M380T 0.48 tolerated(0.06) possibly_damaging(0.482) TCGA-FD-A43X-01 4 142949790 142949790 G C INPP4B 3'UTR 0.36 TCGA-FD-A43X-01 4 153273676 153273676 C T FBXW7 Intron 0.40 TCGA-FD-A43X-01 4 154524521 154524521 G C KIAA0922 Missense_Mutation p.M902I 0.43 tolerated(0.44) benign(0.126) TCGA-FD-A43X-01 4 155254201 155254201 G T DCHS2 Silent p.L554L 0.56 TCGA-FD-A43X-01 4 15709241 15709241 G C BST1 Missense_Mutation p.L141F 0.47 deleterious(0) probably_damaging(0.996) TCGA-FD-A43X-01 4 1695291 1695291 G A SLBP 3'UTR 0.27 TCGA-FD-A43X-01 4 1801111 1801111 G A FGFR3 Silent p.G80G 0.39 TCGA-FD-A43X-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.53 deleterious(0.01) possibly_damaging(0.594) TCGA-FD-A43X-01 4 183522099 183522099 C G TENM3 Silent p.G178G 0.42 TCGA-FD-A43X-01 4 183713952 183713952 C G TENM3 Missense_Mutation p.L2043V 0.45 tolerated(0.08) possibly_damaging(0.636) TCGA-FD-A43X-01 4 2178046 2178046 C G POLN Missense_Mutation p.E399Q 0.45 tolerated(0.45) benign(0.032) TCGA-FD-A43X-01 4 2899988 2899988 C G ADD1 Nonsense_Mutation p.Y273* 0.46 TCGA-FD-A43X-01 4 3237102 3237102 G C HTT Missense_Mutation p.E2850Q 0.23 benign(0.306) TCGA-FD-A43X-01 4 3237383 3237383 C G HTT Missense_Mutation p.S2888C 0.11 benign(0.021) TCGA-FD-A43X-01 4 40439899 40439899 C T RBM47 Missense_Mutation p.E338K 0.57 tolerated(0.6) benign(0.033) TCGA-FD-A43X-01 4 40440305 40440305 C T RBM47 Silent p.E202E 0.54 TCGA-FD-A43X-01 4 54327641 54327641 A G LNX1 Missense_Mutation p.I671T 0.26 deleterious(0) possibly_damaging(0.861) TCGA-FD-A43X-01 4 56291670 56291670 C A TMEM165 3'UTR 0.59 TCGA-FD-A43X-01 4 56883883 56883883 G T CEP135 Nonsense_Mutation p.E958* 0.46 TCGA-FD-A43X-01 4 56883976 56883976 G C CEP135 Missense_Mutation p.D989H 0.40 deleterious(0) probably_damaging(0.922) TCGA-FD-A43X-01 4 59963 59963 C G ZNF595 Missense_Mutation p.S48C 0.12 deleterious_low_confidence(0.04) benign(0.015) TCGA-FD-A43X-01 4 77969763 77969763 G C CCNI Missense_Mutation p.S248C 0.51 tolerated(0.07) probably_damaging(0.935) TCGA-FD-A43X-01 4 83905817 83905817 T C LIN54 Missense_Mutation p.I61V 0.44 tolerated_low_confidence(0.71) benign(0) TCGA-FD-A43X-01 5 102482317 102482317 G C PPIP5K2 Missense_Mutation p.E192Q 0.37 deleterious(0) possibly_damaging(0.799) TCGA-FD-A43X-01 5 102483642 102483642 G A PPIP5K2 Missense_Mutation p.S217N 0.49 tolerated(0.42) benign(0.004) TCGA-FD-A43X-01 5 1078088 1078088 C T SLC12A7 Missense_Mutation p.G497S 0.38 tolerated(0.2) benign(0.183) TCGA-FD-A43X-01 5 108680496 108680496 G C PJA2 Missense_Mutation p.L597V 0.51 deleterious(0) possibly_damaging(0.858) TCGA-FD-A43X-01 5 127623000 127623000 C T FBN2 Missense_Mutation p.D2294N 0.47 deleterious(0) probably_damaging(0.997) TCGA-FD-A43X-01 5 137803577 137803577 C T EGR1 Missense_Mutation p.S480L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-FD-A43X-01 5 140236437 140236437 G A PCDHA10 Silent p.S268S 0.42 TCGA-FD-A43X-01 5 140589142 140589142 C T PCDHB12 Silent p.P221P 0.44 TCGA-FD-A43X-01 5 140604967 140604967 G A PCDHB14 Silent p.L630L 0.39 TCGA-FD-A43X-01 5 140710707 140710707 C G PCDHGA1 Silent p.V152V 0.47 TCGA-FD-A43X-01 5 140710881 140710881 C T PCDHGA1 Silent p.L210L 0.38 TCGA-FD-A43X-01 5 140711496 140711496 C G PCDHGA1 Missense_Mutation p.I415M 0.49 tolerated_low_confidence(0.06) benign(0.043) TCGA-FD-A43X-01 5 140712211 140712211 C T PCDHGA1 Missense_Mutation p.L654F 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-FD-A43X-01 5 140736327 140736327 C T PCDHGA4 Silent p.F520F 0.47 TCGA-FD-A43X-01 5 159776644 159776644 C - C1QTNF2 Frame_Shift_Del p.G175Afs*27 0.32 TCGA-FD-A43X-01 5 161128759 161128759 G C GABRA6 Missense_Mutation p.V448L 0.17 tolerated_low_confidence(0.33) benign(0.055) TCGA-FD-A43X-01 5 17275493 17275493 G A BASP1 Silent p.E56E 0.47 TCGA-FD-A43X-01 5 176022548 176022548 C T CDHR2 Missense_Mutation p.H1270Y 0.41 tolerated(0.17) benign(0.081) TCGA-FD-A43X-01 5 176471534 176471534 G C ZNF346 Missense_Mutation p.A173P 0.41 tolerated(0.24) benign(0.003) TCGA-FD-A43X-01 5 32048697 32048697 G A PDZD2 Silent p.R524R 0.52 TCGA-FD-A43X-01 5 32048704 32048704 G A PDZD2 Missense_Mutation p.D527N 0.49 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 5 36219758 36219758 G A NADK2 Missense_Mutation p.P195L 0.41 tolerated(0.3) probably_damaging(1) TCGA-FD-A43X-01 5 45262271 45262271 C A HCN1 Missense_Mutation p.G809C 0.56 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FD-A43X-01 5 45462069 45462069 C G HCN1 Missense_Mutation p.R297T 0.61 deleterious(0) probably_damaging(0.991) TCGA-FD-A43X-01 5 52194074 52194074 G A ITGA1 Nonsense_Mutation p.W390* 0.50 TCGA-FD-A43X-01 6 10898259 10898259 G C SYCP2L Missense_Mutation p.E118Q 0.52 deleterious(0.03) probably_damaging(0.951) TCGA-FD-A43X-01 6 117198586 117198586 G A RFX6 Missense_Mutation p.E50K 0.42 tolerated_low_confidence(0.34) benign(0.005) TCGA-FD-A43X-01 6 131915384 131915384 C T MED23 Silent p.A1029A 0.26 TCGA-FD-A43X-01 6 135606683 135606683 C T AHI1 3'UTR 0.75 TCGA-FD-A43X-01 6 142399856 142399856 G C NMBR Missense_Mutation p.Q203E 0.46 tolerated(0.42) benign(0.338) TCGA-FD-A43X-01 6 151671189 151671189 C T AKAP12 Missense_Mutation p.P555S 0.49 tolerated(0.07) probably_damaging(0.999) TCGA-FD-A43X-01 6 15496812 15496812 G A JARID2 Silent p.K452K 0.54 TCGA-FD-A43X-01 6 18218020 18218020 C T KDM1B Silent p.I531I 0.43 TCGA-FD-A43X-01 6 27860745 27860745 G A HIST1H2AM Silent p.A61A 0.44 TCGA-FD-A43X-01 6 32017839 32017839 C G TNXB 5'Flank 0.23 TCGA-FD-A43X-01 6 32057092 32057092 C G TNXB Missense_Mutation p.R808T 0.41 benign(0.275) TCGA-FD-A43X-01 6 33385041 33385041 G C CUTA Missense_Mutation p.Q121E 0.25 tolerated(0.14) benign(0.016) TCGA-FD-A43X-01 6 33385354 33385354 G A CUTA Missense_Mutation p.S73L 0.24 tolerated(0.18) benign(0.128) TCGA-FD-A43X-01 6 38743562 38743562 T C DNAH8 Silent p.Y382Y 0.55 TCGA-FD-A43X-01 6 73834336 73834336 G A KCNQ5 Intron 0.64 TCGA-FD-A43X-01 6 7585318 7585318 C G DSP Missense_Mutation p.S2608C 0.50 probably_damaging(0.997) TCGA-FD-A43X-01 6 87725385 87725385 C G HTR1E Silent p.L111L 0.44 TCGA-FD-A43X-01 7 100839626 100839626 A G MOGAT3 Missense_Mutation p.F238S 0.52 deleterious(0) probably_damaging(0.991) TCGA-FD-A43X-01 7 100859192 100859192 C A PLOD3 Silent p.L204L 0.54 TCGA-FD-A43X-01 7 100860035 100860035 C A PLOD3 Nonsense_Mutation p.E48* 0.39 TCGA-FD-A43X-01 7 104748140 104748140 C G KMT2E Nonsense_Mutation p.S1079* 0.58 TCGA-FD-A43X-01 7 122078510 122078510 C T CADPS2 Missense_Mutation p.M787I 0.46 deleterious(0.01) benign(0.103) TCGA-FD-A43X-01 7 128492964 128492964 C G FLNC Missense_Mutation p.F2029L 0.17 deleterious(0.03) probably_damaging(0.963) TCGA-FD-A43X-01 7 140154322 140154322 G T MKRN1 Missense_Mutation p.L482I 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A43X-01 7 150775945 150775945 C G FASTK Silent p.L223L 0.35 TCGA-FD-A43X-01 7 20826399 20826399 C A SP8 Missense_Mutation p.G7W 0.50 deleterious(0) possibly_damaging(0.826) TCGA-FD-A43X-01 7 27209210 27209210 C G RP1-170O19.20 Intron 0.52 TCGA-FD-A43X-01 7 44121923 44121923 T C POLM Missense_Mutation p.M39V 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-FD-A43X-01 7 4955703 4955703 C A MMD2 Nonsense_Mutation p.E100* 0.38 TCGA-FD-A43X-01 7 56128263 56128263 C G CCT6A Intron 0.22 TCGA-FD-A43X-01 7 77539666 77539690 CCTCTCACAGCGTTGGCACTGTCTT - PHTF2 Frame_Shift_Del p.S206Efs*68 0.35 TCGA-FD-A43X-01 7 91715563 91715563 C T AKAP9 Missense_Mutation p.H3016Y 0.48 benign(0.221) TCGA-FD-A43X-01 7 91715574 91715574 C T AKAP9 Silent p.F3019F 0.45 TCGA-FD-A43X-01 8 110397820 110397820 T C PKHD1L1 Missense_Mutation p.I177T 0.53 tolerated(1) benign(0.001) TCGA-FD-A43X-01 8 110460573 110460573 T C PKHD1L1 Missense_Mutation p.V1993A 0.48 tolerated(0.18) benign(0.012) TCGA-FD-A43X-01 8 121220493 121220493 C G COL14A1 Missense_Mutation p.S405C 0.47 deleterious(0) probably_damaging(0.933) TCGA-FD-A43X-01 8 127568858 127568858 C T FAM84B Silent p.Q259Q 0.36 TCGA-FD-A43X-01 8 12957694 12957694 C T DLC1 Missense_Mutation p.A718T 0.56 tolerated(0.36) benign(0.014) TCGA-FD-A43X-01 8 143565395 143565395 G C BAI1 Missense_Mutation p.E730Q 0.54 deleterious(0.01) benign(0) TCGA-FD-A43X-01 8 144358467 144358467 G C GLI4 Missense_Mutation p.E208D 0.53 deleterious(0.01) probably_damaging(0.977) TCGA-FD-A43X-01 8 144940774 144940774 G A EPPK1 Silent p.V2216V 0.47 TCGA-FD-A43X-01 8 144997377 144997377 C T PLEC Silent p.L2377L 0.50 TCGA-FD-A43X-01 8 145582012 145582012 C T FBXL6 Silent p.P32P 0.60 TCGA-FD-A43X-01 8 145649499 145649499 C T VPS28 Missense_Mutation p.R158Q 0.41 tolerated(0.3) benign(0.209) TCGA-FD-A43X-01 8 145739392 145739392 C T RECQL4 Missense_Mutation p.E660K 0.45 tolerated(0.08) benign(0.033) TCGA-FD-A43X-01 8 22145090 22145090 C G PIWIL2 Missense_Mutation p.Q265E 0.55 tolerated(0.1) benign(0.003) TCGA-FD-A43X-01 8 40532281 40532281 C T ZMAT4 Silent p.A173A 0.40 TCGA-FD-A43X-01 8 41397245 41397245 G T GINS4 Nonsense_Mutation p.E116* 0.46 TCGA-FD-A43X-01 8 41525889 41525889 C T ANK1 Missense_Mutation p.E1805K 0.58 tolerated_low_confidence(0.26) benign(0.009) TCGA-FD-A43X-01 8 56723511 56723511 G A TGS1 Missense_Mutation p.D739N 0.19 deleterious(0.03) probably_damaging(0.987) TCGA-FD-A43X-01 9 100087420 100087420 G A CCDC180 Silent p.L541L 1.00 TCGA-FD-A43X-01 9 115449757 115449757 G A INIP 3'UTR 0.94 TCGA-FD-A43X-01 9 115449877 115449877 G C INIP Missense_Mutation p.Q86E 0.93 deleterious(0) possibly_damaging(0.728) TCGA-FD-A43X-01 9 133911664 133911664 C T LAMC3 Silent p.F307F 0.97 TCGA-FD-A43X-01 9 133945110 133945110 G A LAMC3 Missense_Mutation p.G981D 1.00 deleterious(0.04) probably_damaging(0.911) TCGA-FD-A43X-01 9 136230392 136230392 C T SURF4 Missense_Mutation p.D263N 0.96 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 9 35736386 35736386 C T CREB3 Intron 0.96 TCGA-FD-A43X-01 9 35736562 35736562 C T CREB3 Missense_Mutation p.P319S 0.95 tolerated(0.77) benign(0.013) TCGA-FD-A43X-01 9 84200559 84200559 C T TLE1 Silent p.L663L 0.91 TCGA-FD-A43X-01 9 8471022 8471022 C G PTPRD Missense_Mutation p.E1159D 0.47 tolerated(0.57) benign(0.005) TCGA-FD-A43X-01 9 96398772 96398772 C G PHF2 Silent p.L88L 1.00 TCGA-FD-A43X-01 X 129318670 129318670 G T RAB33A Nonsense_Mutation p.E224* 0.97 TCGA-FD-A43X-01 X 135313900 135313900 C T MAP7D3 Missense_Mutation p.V406M 0.99 tolerated(0.81) benign(0.002) TCGA-FD-A43X-01 X 138664663 138664663 C G MCF2 Splice_Site p.X992_splice 0.95 TCGA-FD-A43X-01 X 152954207 152954207 G C SLC6A8 Missense_Mutation p.D60H 0.96 deleterious(0) probably_damaging(1) TCGA-FD-A43X-01 X 2936713 2936713 T G ARSH Splice_Site p.X301_splice 0.96 TCGA-FD-A43X-01 X 34148766 34148766 G C FAM47A Missense_Mutation p.R544G 0.96 tolerated(0.24) benign(0.433) TCGA-FD-A43X-01 X 44945115 44945115 C T KDM6A Nonsense_Mutation p.Q1147* 0.97 TCGA-FD-A43X-01 X 69283220 69283220 C T OTUD6A Silent p.G282G 1.00 TCGA-FD-A43X-01 X 75004745 75004745 G A MAGEE2 Nonsense_Mutation p.Q48* 1.00 TCGA-FD-A43Y-01 10 46321991 46321991 T C AGAP4 Missense_Mutation p.H455R 0.12 tolerated(0.4) benign(0.048) TCGA-FD-A43Y-01 10 50819271 50819273 TGT - SLC18A3 In_Frame_Del p.M162_F163delinsI 0.14 TCGA-FD-A43Y-01 10 51465092 51465092 T C AGAP7 Missense_Mutation p.H455R 0.21 tolerated(0.39) benign(0.003) TCGA-FD-A43Y-01 11 108119802 108119802 C G ATM Nonsense_Mutation p.S403* 0.35 TCGA-FD-A43Y-01 11 17414462 17414462 G C ABCC8 3'UTR 0.34 TCGA-FD-A43Y-01 11 55798563 55798563 C A OR5AS1 Silent p.I223I 0.16 TCGA-FD-A43Y-01 11 56043558 56043558 G A OR5T1 Missense_Mutation p.M148I 0.28 deleterious(0.01) possibly_damaging(0.45) TCGA-FD-A43Y-01 12 51449933 51449933 C G LETMD1 Missense_Mutation p.R236G 0.30 tolerated(0.46) benign(0.004) TCGA-FD-A43Y-01 12 65088719 65088719 G A RASSF3 3'UTR 0.08 TCGA-FD-A43Y-01 12 65563425 65563425 C T LEMD3 Missense_Mutation p.L17F 0.33 deleterious(0) probably_damaging(0.995) TCGA-FD-A43Y-01 12 72057063 72057063 A G ZFC3H1 Missense_Mutation p.F110L 0.17 tolerated(0.47) benign(0.153) TCGA-FD-A43Y-01 12 8688700 8688700 C A CLEC4E Missense_Mutation p.L158F 0.28 tolerated(1) benign(0.007) TCGA-FD-A43Y-01 14 75139595 75139595 T C AREL1 Missense_Mutation p.H454R 0.27 tolerated(0.06) benign(0.205) TCGA-FD-A43Y-01 15 22368913 22368913 T A OR4M2 Missense_Mutation p.F113Y 0.09 deleterious(0.01) possibly_damaging(0.801) TCGA-FD-A43Y-01 15 52849339 52849340 - A ARPP19 Frame_Shift_Ins p.K42Nfs*20 0.17 TCGA-FD-A43Y-01 16 31121102 31121102 G T BCKDK Missense_Mutation p.V125L 0.10 deleterious(0.02) probably_damaging(0.947) TCGA-FD-A43Y-01 16 49670989 49670989 A T ZNF423 Missense_Mutation p.Y692N 0.36 deleterious(0) probably_damaging(0.998) TCGA-FD-A43Y-01 16 67319263 67319263 G T PLEKHG4 Nonsense_Mutation p.E756* 0.10 TCGA-FD-A43Y-01 17 1583092 1583092 C A PRPF8 Missense_Mutation p.S367I 0.19 tolerated(0.1) benign(0.001) TCGA-FD-A43Y-01 17 27442455 27442455 C T MYO18A Silent p.P744P 0.13 TCGA-FD-A43Y-01 17 55752349 55752349 G C MSI2 Silent p.R269R 0.20 TCGA-FD-A43Y-01 17 56584558 56584558 G A MTMR4 Missense_Mutation p.P263L 0.21 tolerated(0.05) probably_damaging(0.946) TCGA-FD-A43Y-01 17 62859237 62859237 A G LRRC37A3 Intron 0.35 TCGA-FD-A43Y-01 17 76089084 76089084 C G TNRC6C Nonsense_Mutation p.Y1344* 0.43 TCGA-FD-A43Y-01 18 47809256 47809256 G A CXXC1 Missense_Mutation p.R602C 0.28 deleterious(0) possibly_damaging(0.489) TCGA-FD-A43Y-01 19 42474636 42474636 G A ATP1A3 Silent p.I787I 0.20 TCGA-FD-A43Y-01 19 49357058 49357058 G A PLEKHA4 Missense_Mutation p.R403W 0.24 deleterious(0.03) probably_damaging(1) TCGA-FD-A43Y-01 19 51560021 51560021 C T KLK13 Silent p.G219G 0.13 TCGA-FD-A43Y-01 19 51919207 51919207 G A SIGLEC10 Silent p.C323C 0.08 TCGA-FD-A43Y-01 1 152127465 152127465 A C RPTN Missense_Mutation p.W704G 0.30 tolerated(0.09) benign(0.093) TCGA-FD-A43Y-01 1 153533976 153533976 A - S100A2 Frame_Shift_Del p.F78Sfs*46 0.24 TCGA-FD-A43Y-01 1 158047811 158047811 C T KIRREL Missense_Mutation p.A78V 0.12 tolerated(0.59) benign(0.005) TCGA-FD-A43Y-01 1 158324409 158324409 T G CD1E Missense_Mutation p.F101V 0.11 tolerated(0.08) benign(0.101) TCGA-FD-A43Y-01 1 16475544 16475544 T A EPHA2 Splice_Site p.X52_splice 0.26 TCGA-FD-A43Y-01 1 183520046 183520046 T C SMG7 Silent p.T1052T 0.18 TCGA-FD-A43Y-01 1 186022170 186022170 G T HMCN1 Missense_Mutation p.G2222C 0.18 probably_damaging(1) TCGA-FD-A43Y-01 1 223989915 223989915 G A TP53BP2 Silent p.A376A 0.05 TCGA-FD-A43Y-01 1 230829111 230829111 A G COG2 Missense_Mutation p.K730R 0.17 tolerated(0.41) benign(0.012) TCGA-FD-A43Y-01 1 233344278 233344278 C T PCNXL2 Missense_Mutation p.R950K 0.26 deleterious(0.03) benign(0.298) TCGA-FD-A43Y-01 1 234519589 234519589 T A COA6 3'UTR 0.40 TCGA-FD-A43Y-01 1 37346238 37346238 T A GRIK3 Missense_Mutation p.T183S 0.13 tolerated(0.39) possibly_damaging(0.841) TCGA-FD-A43Y-01 1 40041631 40041631 C A PABPC4 5'UTR 0.09 TCGA-FD-A43Y-01 1 40149671 40149671 C T HPCAL4 Missense_Mutation p.E106K 0.06 tolerated(0.77) benign(0.146) TCGA-FD-A43Y-01 1 75198857 75198857 C A CRYZ 5'UTR 0.23 TCGA-FD-A43Y-01 20 2634888 2634888 C T NOP56 Intron 0.17 TCGA-FD-A43Y-01 20 40730923 40730923 C T PTPRT Silent p.V1185V 0.23 TCGA-FD-A43Y-01 21 10906986 10906986 T A TPTE Missense_Mutation p.R525S 0.10 tolerated(0.06) benign(0.02) TCGA-FD-A43Y-01 21 45563170 45563170 G A C21orf33 Missense_Mutation p.G202D 0.20 tolerated(0.11) possibly_damaging(0.788) TCGA-FD-A43Y-01 22 31302353 31302353 G A OSBP2 3'UTR 0.49 TCGA-FD-A43Y-01 22 50721485 50721485 C A PLXNB2 Missense_Mutation p.C937F 0.38 deleterious(0) probably_damaging(1) TCGA-FD-A43Y-01 2 166767870 166767870 T C TTC21B Missense_Mutation p.K810E 0.11 deleterious(0.01) possibly_damaging(0.597) TCGA-FD-A43Y-01 2 178098800 178098800 T A NFE2L2 Missense_Mutation p.E82V 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A43Y-01 2 179702070 179702070 G T CCDC141 Silent p.L1292L 0.07 TCGA-FD-A43Y-01 2 89442569 89442569 A G IGKV3-20 Missense_Mutation p.L8P 0.18 deleterious(0.01) benign(0.024) TCGA-FD-A43Y-01 3 195622267 195622267 G A TNK2 Silent p.P7P 0.25 TCGA-FD-A43Y-01 3 9516217 9516217 G T SETD5 Missense_Mutation p.K1194N 0.17 deleterious(0.05) benign(0.276) TCGA-FD-A43Y-01 4 177094435 177094435 G A WDR17 Missense_Mutation p.D1127N 0.19 tolerated(0.24) benign(0.004) TCGA-FD-A43Y-01 4 628544 628544 G C PDE6B Missense_Mutation p.G183R 0.19 deleterious(0.03) probably_damaging(1) TCGA-FD-A43Y-01 4 70146241 70146243 TTC - UGT2B28 In_Frame_Del p.L11del 0.44 TCGA-FD-A43Y-01 4 96256757 96256757 T C UNC5C Silent p.P50P 0.29 TCGA-FD-A43Y-01 5 142150344 142150344 C G ARHGAP26 Silent p.L6L 0.22 TCGA-FD-A43Y-01 5 180037016 180037016 G A FLT4 Silent p.N1232N 0.36 TCGA-FD-A43Y-01 5 68716354 68716354 A G MARVELD2 Missense_Mutation p.Q381R 0.32 tolerated(0.15) benign(0.005) TCGA-FD-A43Y-01 5 81548479 81548479 G T ATG10 Splice_Site p.X184_splice 0.60 TCGA-FD-A43Y-01 6 110300646 110300646 G A GPR6 Missense_Mutation p.V111I 0.49 tolerated(1) benign(0.03) TCGA-FD-A43Y-01 6 18134122 18134122 T C TPMT Splice_Site p.X165_splice 0.14 TCGA-FD-A43Y-01 6 28227565 28227565 C T NKAPL Missense_Mutation p.P139L 0.12 tolerated(1) unknown(0) TCGA-FD-A43Y-01 6 35261626 35261626 C T ZNF76 Silent p.A476A 0.11 TCGA-FD-A43Y-01 6 90660046 90660046 G A BACH2 Silent p.S593S 0.15 TCGA-FD-A43Y-01 7 108142985 108142985 T G PNPLA8 Silent p.P436P 0.24 TCGA-FD-A43Y-01 7 121608102 121608102 T C PTPRZ1 Silent p.N74N 0.13 TCGA-FD-A43Y-01 7 150779433 150779433 C - TMUB1 Frame_Shift_Del p.S73Tfs*2 0.10 TCGA-FD-A43Y-01 7 36194739 36194739 A C EEPD1 Missense_Mutation p.Q269P 0.14 deleterious(0) possibly_damaging(0.609) TCGA-FD-A43Y-01 7 43679186 43679186 C T COA1 Missense_Mutation p.E146K 0.17 deleterious_low_confidence(0.01) benign(0.339) TCGA-FD-A43Y-01 7 88965481 88965481 T G ZNF804B Missense_Mutation p.F1062C 0.31 deleterious(0.03) benign(0.022) TCGA-FD-A43Y-01 8 133919036 133919036 A G TG Silent p.Q1246Q 0.19 TCGA-FD-A43Y-01 8 145999040 145999040 T A ZNF34 Missense_Mutation p.T432S 0.17 tolerated(1) benign(0.223) TCGA-FD-A43Y-01 8 3047543 3047543 G A CSMD1 Silent p.V1763V 0.30 TCGA-FD-A43Y-01 8 67786443 67786443 T G MCMDC2 Missense_Mutation p.F23C 0.22 deleterious(0) probably_damaging(0.931) TCGA-FD-A43Y-01 8 69688634 69688634 G T C8orf34 Nonsense_Mutation p.G469* 0.23 TCGA-FD-A43Y-01 8 86354397 86354397 G T CA3 Missense_Mutation p.D110Y 0.15 deleterious(0) probably_damaging(0.945) TCGA-FD-A43Y-01 9 132594236 132594236 C T C9orf78 Missense_Mutation p.D95N 0.24 deleterious(0) possibly_damaging(0.698) TCGA-FD-A43Y-01 9 19380207 19380207 A C RPS6 5'UTR 0.20 TCGA-FD-A43Y-01 9 84609589 84609589 G A SPATA31D1 Missense_Mutation p.A1402T 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-FD-A43Y-01 X 151870321 151870321 C G MAGEA6 3'UTR 0.30 TCGA-FD-A43Y-01 X 3242158 3242158 G C MXRA5 Missense_Mutation p.A523G 0.50 deleterious(0) probably_damaging(0.958) TCGA-FD-A43Y-01 X 34962949 34962949 T C FAM47B 3'UTR 0.50 TCGA-FD-A43Y-01 X 55513637 55513637 G C USP51 Missense_Mutation p.S579C 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A5BR-01 10 105128280 105128280 C A TAF5 Silent p.A178A 0.08 TCGA-FD-A5BR-01 10 27537202 27537202 G T RP11-85G18.6 Intron 0.12 TCGA-FD-A5BR-01 11 129772240 129772240 C T PRDM10 Missense_Mutation p.G1151R 0.05 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A5BR-01 11 613104 613104 G T IRF7 Missense_Mutation p.F430L 0.34 deleterious(0) possibly_damaging(0.488) TCGA-FD-A5BR-01 11 62572815 62572815 C G NXF1 Missense_Mutation p.G5A 0.29 deleterious(0.02) possibly_damaging(0.538) TCGA-FD-A5BR-01 11 63676673 63676673 C - MARK2 Frame_Shift_Del p.N777Kfs*6 0.25 TCGA-FD-A5BR-01 11 66636366 66636366 C A PC Missense_Mutation p.V325F 0.38 deleterious(0) probably_damaging(1) TCGA-FD-A5BR-01 11 66636369 66636369 C T PC Missense_Mutation p.E324K 0.38 deleterious(0) probably_damaging(1) TCGA-FD-A5BR-01 11 8947013 8947013 G T C11orf16 Missense_Mutation p.P401T 0.55 deleterious(0.01) probably_damaging(0.978) TCGA-FD-A5BR-01 11 8977775 8977775 C T TMEM9B Missense_Mutation p.E90K 0.45 tolerated(0.07) benign(0.038) TCGA-FD-A5BR-01 12 101760367 101760367 C G UTP20 Missense_Mutation p.L2053V 0.24 deleterious(0.02) possibly_damaging(0.712) TCGA-FD-A5BR-01 12 120139706 120139706 T C CIT Missense_Mutation p.I1788V 0.33 tolerated(0.6) benign(0.02) TCGA-FD-A5BR-01 12 122848560 122848560 C A CLIP1 Missense_Mutation p.G251V 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A5BR-01 12 123706121 123706121 C A MPHOSPH9 Missense_Mutation p.V72F 0.42 tolerated(0.37) benign(0.154) TCGA-FD-A5BR-01 12 126135302 126135302 G A TMEM132B Missense_Mutation p.A568T 0.35 tolerated(0.09) possibly_damaging(0.846) TCGA-FD-A5BR-01 12 126135303 126135303 C A TMEM132B Missense_Mutation p.A568D 0.34 deleterious(0) probably_damaging(0.994) TCGA-FD-A5BR-01 12 66771061 66771061 C G GRIP1 Missense_Mutation p.A824P 0.12 tolerated(0.54) benign(0.007) TCGA-FD-A5BR-01 13 23907631 23907631 G T SACS Missense_Mutation p.L3462I 0.10 probably_damaging(0.984) TCGA-FD-A5BR-01 14 22111158 22111159 - A TRAV1-2 5'UTR 0.26 TCGA-FD-A5BR-01 14 23863486 23863486 C - MYH6 Frame_Shift_Del p.V826Sfs*7 0.13 TCGA-FD-A5BR-01 14 36946256 36946256 C T SFTA3 Missense_Mutation p.V61M 0.19 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-FD-A5BR-01 14 47504364 47504364 C A MDGA2 Missense_Mutation p.D557Y 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A5BR-01 14 50089276 50089276 G T MGAT2 Silent p.G430G 0.26 TCGA-FD-A5BR-01 15 25959156 25959156 T A ATP10A Missense_Mutation p.Y670F 0.29 tolerated(0.55) benign(0.008) TCGA-FD-A5BR-01 15 43931171 43931171 G A CATSPER2 Missense_Mutation p.T258I 0.13 deleterious(0.01) benign(0.375) TCGA-FD-A5BR-01 15 49917391 49917391 C G DTWD1 Silent p.L9L 0.23 TCGA-FD-A5BR-01 15 50521168 50521168 C T SLC27A2 Missense_Mutation p.T495I 0.36 deleterious(0.01) probably_damaging(0.949) TCGA-FD-A5BR-01 15 51285583 51285583 C T AP4E1 Silent p.L703L 0.13 TCGA-FD-A5BR-01 15 54527298 54527298 C T UNC13C Nonsense_Mutation p.R1048* 0.16 TCGA-FD-A5BR-01 16 2025614 2025614 A C TBL3 Missense_Mutation p.H297P 0.13 deleterious(0.02) benign(0.304) TCGA-FD-A5BR-01 16 30535972 30535972 A G ZNF768 Missense_Mutation p.S497P 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FD-A5BR-01 16 48382162 48382162 C A LONP2 Silent p.A766A 0.29 TCGA-FD-A5BR-01 16 83711832 83711832 C A CDH13 Missense_Mutation p.S482Y 0.23 deleterious(0) probably_damaging(0.977) TCGA-FD-A5BR-01 16 88721706 88721706 G C MVD Silent p.T266T 0.35 TCGA-FD-A5BR-01 16 89347241 89347241 G A ANKRD11 Silent p.L1903L 0.38 TCGA-FD-A5BR-01 17 10356182 10356185 TCCA - MYH4 Frame_Shift_Del p.L1059Rfs*4 0.46 TCGA-FD-A5BR-01 17 36093623 36093623 A G HNF1B Silent p.L246L 0.13 TCGA-FD-A5BR-01 17 60024360 60024360 C T MED13 Missense_Mutation p.V2104M 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A5BR-01 17 7574017 7574022 CGCTCA - TP53 In_Frame_Del p.E336_R337del 0.29 TCGA-FD-A5BR-01 18 9859240 9859240 C T RAB31 Missense_Mutation p.P169L 0.37 tolerated(0.12) benign(0.008) TCGA-FD-A5BR-01 19 1257172 1257172 C T MIDN Silent p.G436G 0.27 TCGA-FD-A5BR-01 19 12874211 12874211 C T HOOK2 Missense_Mutation p.R682Q 0.12 deleterious(0.02) possibly_damaging(0.558) TCGA-FD-A5BR-01 19 15564277 15564277 C G RASAL3 Missense_Mutation p.A771P 0.19 tolerated(1) benign(0.006) TCGA-FD-A5BR-01 19 17316122 17316122 T C MYO9B Missense_Mutation p.C1681R 0.26 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BR-01 19 18888230 18888230 C T CRTC1 3'UTR 0.08 TCGA-FD-A5BR-01 19 40148588 40148588 C T LGALS16 Silent p.I27I 0.32 TCGA-FD-A5BR-01 19 56693616 56693616 C A GALP Missense_Mutation p.A71D 0.13 deleterious(0) benign(0.387) TCGA-FD-A5BR-01 19 57325887 57325887 G A PEG3 Missense_Mutation p.P1308L 0.07 tolerated(0.08) benign(0.144) TCGA-FD-A5BR-01 19 8976428 8976428 C G MUC16 Missense_Mutation p.E14134Q 0.17 possibly_damaging(0.86) TCGA-FD-A5BR-01 1 152275394 152275394 C T FLG Missense_Mutation p.G3990R 0.28 unknown(0) TCGA-FD-A5BR-01 1 152284326 152284326 A C FLG Silent p.T1012T 0.32 TCGA-FD-A5BR-01 1 152324561 152324561 G A FLG2 Missense_Mutation p.H1901Y 0.30 benign(0.21) TCGA-FD-A5BR-01 1 158623143 158623143 C T SPTA1 Missense_Mutation p.D1037N 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-FD-A5BR-01 1 180913531 180913531 C A KIAA1614 Missense_Mutation p.P1056T 0.19 deleterious(0) probably_damaging(0.978) TCGA-FD-A5BR-01 1 203317224 203317224 C T FMOD Missense_Mutation p.E59K 0.24 tolerated(0.28) benign(0.411) TCGA-FD-A5BR-01 1 205036280 205036280 C A CNTN2 Missense_Mutation p.T676N 0.32 tolerated(0.39) benign(0.035) TCGA-FD-A5BR-01 1 223178584 223178584 A G DISP1 Missense_Mutation p.Y1282C 0.08 tolerated_low_confidence(0.2) benign(0.003) TCGA-FD-A5BR-01 1 43102993 43102993 A T CCDC30 Nonsense_Mutation p.K528* 0.09 TCGA-FD-A5BR-01 1 46654596 46654596 G A POMGNT1 Missense_Mutation p.P681L 0.10 benign(0.004) TCGA-FD-A5BR-01 1 48708224 48708224 C T SLC5A9 Silent p.A616A 0.13 TCGA-FD-A5BR-01 1 75038381 75038381 G A C1orf173 Missense_Mutation p.R1005W 0.40 tolerated(0.18) benign(0.001) TCGA-FD-A5BR-01 1 75072402 75072402 C A C1orf173 Missense_Mutation p.A458S 0.14 deleterious(0.03) possibly_damaging(0.555) TCGA-FD-A5BR-01 20 419255 419265 TTAGGGGCCCA - TBC1D20 Frame_Shift_Del p.W393Vfs*20 0.17 TCGA-FD-A5BR-01 21 47556892 47556892 C A FTCD Intron 0.23 TCGA-FD-A5BR-01 22 36624228 36624228 T C APOL2 Missense_Mutation p.Q79R 0.25 deleterious(0.01) benign(0.056) TCGA-FD-A5BR-01 2 107459724 107459724 C T ST6GAL2 Missense_Mutation p.R237H 0.43 benign(0.022) TCGA-FD-A5BR-01 2 111416254 111416254 T C BUB1 Missense_Mutation p.M448V 0.24 tolerated(0.32) benign(0.002) TCGA-FD-A5BR-01 2 152348933 152348933 G A NEB Missense_Mutation p.R8281W 0.11 probably_damaging(1) TCGA-FD-A5BR-01 2 1653147 1653162 AGGGTGGTGGACACCA - PXDN Frame_Shift_Del p.L797Rfs*17 0.36 TCGA-FD-A5BR-01 2 20197015 20197015 C T MATN3 Missense_Mutation p.D392N 0.20 tolerated(0.21) benign(0.002) TCGA-FD-A5BR-01 2 238275412 238275412 G A COL6A3 Silent p.S1806S 0.21 TCGA-FD-A5BR-01 2 27603209 27603209 G A ZNF513 Intron 0.22 TCGA-FD-A5BR-01 2 79350028 79350028 C T REG1A Missense_Mutation p.A128V 0.35 deleterious(0.02) possibly_damaging(0.887) TCGA-FD-A5BR-01 3 11061975 11061975 C T SLC6A1 Missense_Mutation p.T183I 0.22 deleterious(0.03) possibly_damaging(0.515) TCGA-FD-A5BR-01 3 160964133 160964133 G A NMD3 Missense_Mutation p.G343R 0.37 deleterious(0.02) benign(0.002) TCGA-FD-A5BR-01 3 173525587 173525587 T G NLGN1 Missense_Mutation p.I204S 0.27 deleterious(0) probably_damaging(0.966) TCGA-FD-A5BR-01 3 193353261 193353261 A T OPA1 Nonsense_Mutation p.K282* 0.20 TCGA-FD-A5BR-01 3 66433576 66433576 G A LRIG1 Missense_Mutation p.A774V 0.25 deleterious(0) possibly_damaging(0.472) TCGA-FD-A5BR-01 4 144359596 144359596 G A GAB1 Silent p.P346P 0.07 TCGA-FD-A5BR-01 4 27024628 27024628 C G STIM2 3'UTR 0.23 TCGA-FD-A5BR-01 4 8608502 8608502 C A CPZ Missense_Mutation p.N315K 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BR-01 4 96036889 96036889 C T BMPR1B Silent p.N130N 0.11 TCGA-FD-A5BR-01 5 127483339 127483339 C T SLC12A2 Missense_Mutation p.T600I 0.13 deleterious(0.01) benign(0.003) TCGA-FD-A5BR-01 5 127483419 127483419 C T SLC12A2 Nonsense_Mutation p.Q627* 0.09 TCGA-FD-A5BR-01 5 127484562 127484562 C G SLC12A2 Missense_Mutation p.I666M 0.07 deleterious(0) probably_damaging(0.987) TCGA-FD-A5BR-01 5 127488425 127488425 C T SLC12A2 Missense_Mutation p.A764V 0.10 deleterious(0) probably_damaging(0.996) TCGA-FD-A5BR-01 5 127610357 127610357 G T FBN2 Missense_Mutation p.T2538K 0.09 deleterious(0) possibly_damaging(0.883) TCGA-FD-A5BR-01 5 127653946 127653946 C A FBN2 Missense_Mutation p.D1538Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BR-01 5 127653958 127653958 C T FBN2 Missense_Mutation p.D1534N 0.13 tolerated(1) benign(0.048) TCGA-FD-A5BR-01 5 127653964 127653964 C T FBN2 Splice_Site p.X1532_splice 0.14 TCGA-FD-A5BR-01 5 1321774 1321774 C A CLPTM1L Silent p.L464L 0.08 TCGA-FD-A5BR-01 5 140745457 140745457 C T PCDHGA5 Silent p.F520F 0.07 TCGA-FD-A5BR-01 5 161309563 161309563 G T GABRA1 Splice_Site p.X187_splice 0.16 TCGA-FD-A5BR-01 5 169139183 169139183 G T DOCK2 Missense_Mutation p.G539W 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A5BR-01 5 23509685 23509685 A C PRDM9 Missense_Mutation p.N59T 0.42 tolerated_low_confidence(0.16) benign(0.066) TCGA-FD-A5BR-01 5 6743869 6743869 C T PAPD7 Silent p.F137F 0.42 TCGA-FD-A5BR-01 6 111686503 111686503 C G REV3L Missense_Mutation p.D2240H 0.17 deleterious(0) probably_damaging(0.938) TCGA-FD-A5BR-01 6 12161748 12161748 T A HIVEP1 Missense_Mutation p.N2188K 0.42 deleterious(0.04) benign(0.391) TCGA-FD-A5BR-01 6 160679756 160679756 C T SLC22A2 Missense_Mutation p.G12R 0.16 deleterious(0.02) benign(0.078) TCGA-FD-A5BR-01 6 161007551 161007551 C T LPA Silent p.V1353V 0.17 TCGA-FD-A5BR-01 6 43029073 43029073 G A KLC4 Silent p.R18R 0.07 TCGA-FD-A5BR-01 6 46826155 46826155 C A GPR116 Missense_Mutation p.C1162F 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A5BR-01 6 56483414 56483414 C G DST Intron 0.31 TCGA-FD-A5BR-01 7 13935606 13935606 C T ETV1 Missense_Mutation p.R440H 0.32 tolerated(0.54) probably_damaging(0.943) TCGA-FD-A5BR-01 7 4949617 4949617 T G MMD2 Silent p.A168A 0.20 TCGA-FD-A5BR-01 7 82584839 82584839 G T PCLO Missense_Mutation p.D1810E 0.37 unknown(0) TCGA-FD-A5BR-01 7 99110164 99110164 A T ZKSCAN5 Missense_Mutation p.D168V 0.37 deleterious(0.05) benign(0.006) TCGA-FD-A5BR-01 8 117878903 117878903 A G RAD21 Silent p.H22H 0.06 TCGA-FD-A5BR-01 8 131880114 131880114 G C ADCY8 Missense_Mutation p.Q730E 0.57 deleterious(0) benign(0.125) TCGA-FD-A5BR-01 8 134034365 134034365 C A TG Silent p.R2336R 0.04 TCGA-FD-A5BR-01 8 22137054 22137054 G A PIWIL2 Missense_Mutation p.G52E 0.30 tolerated_low_confidence(0.33) benign(0.002) TCGA-FD-A5BR-01 8 31024662 31024662 C A WRN Silent p.V1369V 0.20 TCGA-FD-A5BR-01 8 70512953 70512953 C A SULF1 Missense_Mutation p.Q284K 0.05 deleterious(0) probably_damaging(0.99) TCGA-FD-A5BR-01 8 98718944 98718944 T G MTDH Missense_Mutation p.L413R 0.09 tolerated(0.11) benign(0.203) TCGA-FD-A5BR-01 9 131550683 131550683 A C TBC1D13 Missense_Mutation p.S32R 0.30 tolerated(0.34) benign(0.004) TCGA-FD-A5BR-01 9 15468626 15468626 A G PSIP1 Splice_Site p.X474_splice 0.32 TCGA-FD-A5BR-01 9 35957247 35957249 AAG GA OR2S2 Frame_Shift_Del p.L283Sfs*6 0.33 TCGA-FD-A5BS-01 10 135125450 135125450 G C ZNF511 Intron 0.10 TCGA-FD-A5BS-01 10 31134165 31134165 C T ZNF438 Missense_Mutation p.E738K 0.06 deleterious(0.02) possibly_damaging(0.874) TCGA-FD-A5BS-01 10 45941174 45941174 C T ALOX5 3'UTR 0.10 TCGA-FD-A5BS-01 10 63957667 63957667 C T RTKN2 Silent p.%3D 0.19 TCGA-FD-A5BS-01 11 111386809 111386809 G C C11orf88 Missense_Mutation p.E105Q 0.12 deleterious(0.01) possibly_damaging(0.735) TCGA-FD-A5BS-01 11 47256319 47256319 C T DDB2 Silent p.L238L 0.10 TCGA-FD-A5BS-01 11 66837937 66837937 C T RHOD Silent p.I124I 0.06 TCGA-FD-A5BS-01 12 6436877 6436877 G A PLEKHG6 Missense_Mutation p.E710K 0.10 deleterious_low_confidence(0.03) benign(0.169) TCGA-FD-A5BS-01 12 9760381 9760381 C T KLRB1 Missense_Mutation p.E19K 0.14 tolerated(1) benign(0.006) TCGA-FD-A5BS-01 13 114782770 114782770 G A RASA3 Silent p.T383T 0.07 TCGA-FD-A5BS-01 13 37524102 37524102 C G ALG5 Missense_Mutation p.E318Q 0.10 tolerated(0.26) benign(0.002) TCGA-FD-A5BS-01 13 38143931 38143931 G C POSTN Missense_Mutation p.S766C 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.687) TCGA-FD-A5BS-01 13 99092981 99092981 C T FARP1 Missense_Mutation p.S896L 0.11 tolerated(0.18) benign(0.014) TCGA-FD-A5BS-01 16 30365641 30365641 C T CD2BP2 Silent p.L27L 0.06 TCGA-FD-A5BS-01 16 52497974 52497974 G C TOX3 Missense_Mutation p.P94A 0.07 tolerated(0.15) benign(0.005) TCGA-FD-A5BS-01 16 85015570 85015570 C T ZDHHC7 Missense_Mutation p.E153K 0.05 deleterious(0.01) possibly_damaging(0.869) TCGA-FD-A5BS-01 19 16528781 16528781 G A EPS15L1 Missense_Mutation p.S362L 0.09 deleterious(0) possibly_damaging(0.896) TCGA-FD-A5BS-01 19 19017849 19017849 G A COPE Silent p.L121L 0.25 TCGA-FD-A5BS-01 19 51986603 51986603 C T CEACAM18 Missense_Mutation p.P397S 0.19 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-FD-A5BS-01 1 117552712 117552712 A G CD101 Missense_Mutation p.Y95C 0.08 deleterious(0) probably_damaging(0.994) TCGA-FD-A5BS-01 1 160209906 160209906 C T DCAF8 Missense_Mutation p.E102K 0.12 tolerated(0.07) benign(0.11) TCGA-FD-A5BS-01 1 180974535 180974535 C A STX6 Missense_Mutation p.D34Y 0.10 deleterious(0.01) possibly_damaging(0.763) TCGA-FD-A5BS-01 20 3127437 3127437 G A FASTKD5 Silent p.F760F 0.08 TCGA-FD-A5BS-01 20 55803330 55803330 G A BMP7 Missense_Mutation p.T189M 0.09 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BS-01 2 86254638 86254638 C T POLR1A Missense_Mutation p.D1691N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A5BS-01 6 143093208 143093208 C T HIVEP2 Missense_Mutation p.E890K 0.09 deleterious(0) probably_damaging(0.993) TCGA-FD-A5BS-01 6 160564643 160564643 C T SLC22A1 Silent p.I449I 0.08 TCGA-FD-A5BS-01 7 100775224 100775224 C T SERPINE1 Missense_Mutation p.L192F 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A5BS-01 8 144332417 144332417 G C ZFP41 Missense_Mutation p.R135T 0.06 deleterious(0) probably_damaging(0.991) TCGA-FD-A5BS-01 8 17920698 17920698 G A ASAH1 Missense_Mutation p.L183F 0.08 tolerated(0.06) benign(0.315) TCGA-FD-A5BS-01 8 37917502 37917502 C T EIF4EBP1 3'UTR 0.11 TCGA-FD-A5BS-01 8 53570635 53570635 G T RB1CC1 Missense_Mutation p.L615I 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A5BS-01 X 118370492 118370492 G A PGRMC1 Missense_Mutation p.D56N 0.22 tolerated(0.42) benign(0.001) TCGA-FD-A5BS-01 X 20043941 20043941 C T MAP7D2 Silent p.K379K 0.07 TCGA-FD-A5BT-01 10 102750291 102750291 C T C10orf2 Missense_Mutation p.S528F 0.14 deleterious(0.01) benign(0.139) TCGA-FD-A5BT-01 10 105215487 105215487 G A CALHM1 Silent p.F191F 0.09 TCGA-FD-A5BT-01 10 116417769 116417769 C A ABLIM1 Missense_Mutation p.C64F 0.09 tolerated_low_confidence(0.1) benign(0.001) TCGA-FD-A5BT-01 10 124036416 124036416 G C BTBD16 Silent p.L43L 0.14 TCGA-FD-A5BT-01 10 4879734 4879734 G C AKR1E2 Missense_Mutation p.L181F 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 10 7755183 7755183 G C ITIH2 Missense_Mutation p.E134D 0.08 tolerated(0.19) benign(0.181) TCGA-FD-A5BT-01 10 82126672 82126672 C T DYDC2 Missense_Mutation p.H181Y 0.05 tolerated(1) benign(0.003) TCGA-FD-A5BT-01 10 94368853 94368853 C A KIF11 Nonsense_Mutation p.S155* 0.10 TCGA-FD-A5BT-01 10 96829101 96829101 C T CYP2C8 Nonsense_Mutation p.W20* 0.11 TCGA-FD-A5BT-01 11 117152353 117152353 G A RNF214 Missense_Mutation p.G425E 0.08 deleterious(0) probably_damaging(0.994) TCGA-FD-A5BT-01 11 125763945 125763945 G A PUS3 Missense_Mutation p.S394F 0.08 tolerated(0.08) benign(0.042) TCGA-FD-A5BT-01 11 1272733 1272733 C G MUC5B Missense_Mutation p.H4875D 0.09 unknown(0) TCGA-FD-A5BT-01 11 3141765 3141765 C T OSBPL5 Silent p.Q164Q 0.12 TCGA-FD-A5BT-01 11 60201334 60201334 A G MS4A5 Missense_Mutation p.I146V 0.18 tolerated(0.47) benign(0.076) TCGA-FD-A5BT-01 11 65271870 65271870 G C MALAT1 RNA 0.16 TCGA-FD-A5BT-01 11 65359467 65359467 C T EHBP1L1 Nonsense_Mutation p.Q1460* 0.10 TCGA-FD-A5BT-01 11 6655354 6655354 C A DCHS1 Missense_Mutation p.D661Y 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 11 89424266 89424266 A G FOLH1B RNA 0.12 TCGA-FD-A5BT-01 12 46600948 46600948 C G SLC38A1 Missense_Mutation p.E185Q 0.17 tolerated(0.12) benign(0.361) TCGA-FD-A5BT-01 12 57642935 57642935 C T STAC3 Missense_Mutation p.E75K 0.10 tolerated(0.26) benign(0.007) TCGA-FD-A5BT-01 12 7293876 7293876 C T CLSTN3 Silent p.L454L 0.07 TCGA-FD-A5BT-01 13 108860980 108860980 T A LIG4 Missense_Mutation p.R879S 0.21 tolerated(0.07) possibly_damaging(0.723) TCGA-FD-A5BT-01 13 113718678 113718678 G A MCF2L Missense_Mutation p.E184K 0.15 tolerated(0.29) benign(0.146) TCGA-FD-A5BT-01 13 20717179 20717179 G C GJA3 Missense_Mutation p.I83M 0.13 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 13 28009278 28009278 C T GTF3A Silent p.L294L 0.11 TCGA-FD-A5BT-01 13 33704320 33704320 C T STARD13 Missense_Mutation p.R165Q 0.15 tolerated(0.64) benign(0.001) TCGA-FD-A5BT-01 13 41533090 41533090 G C ELF1 Silent p.L45L 0.21 TCGA-FD-A5BT-01 13 49039501 49039501 C G RB1 Nonsense_Mutation p.S829* 0.10 TCGA-FD-A5BT-01 13 52604242 52604242 C T UTP14C Silent p.L434L 0.13 TCGA-FD-A5BT-01 13 61102546 61102546 C T TDRD3 Missense_Mutation p.S396L 0.09 tolerated(0.45) benign(0) TCGA-FD-A5BT-01 13 93879686 93879686 C A GPC6 5'UTR 0.08 TCGA-FD-A5BT-01 14 102477157 102477157 G T DYNC1H1 Silent p.S2162S 0.09 TCGA-FD-A5BT-01 14 106610477 106610477 C G IGHV3-15 Missense_Mutation p.E65Q 0.05 tolerated_low_confidence(0.12) possibly_damaging(0.467) TCGA-FD-A5BT-01 14 107113848 107113848 A G IGHV3-64 Missense_Mutation p.S83P 0.08 deleterious_low_confidence(0.01) benign(0.3) TCGA-FD-A5BT-01 14 23415832 23415832 C T HAUS4 Missense_Mutation p.E332K 0.20 tolerated(0.62) possibly_damaging(0.547) TCGA-FD-A5BT-01 14 45523713 45523713 C T FAM179B Missense_Mutation p.S1454L 0.20 deleterious(0.05) benign(0.112) TCGA-FD-A5BT-01 14 75078530 75078530 C T LTBP2 Missense_Mutation p.V40I 0.19 tolerated(0.35) benign(0.002) TCGA-FD-A5BT-01 14 81574897 81574897 G C TSHR Intron 0.17 TCGA-FD-A5BT-01 14 94088657 94088657 C T UNC79 Missense_Mutation p.S1516F 0.21 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-FD-A5BT-01 15 43109248 43109248 G A TTBK2 Silent p.I195I 0.17 TCGA-FD-A5BT-01 15 59182488 59182488 T C SLTM Missense_Mutation p.I691V 0.12 tolerated(0.13) unknown(0) TCGA-FD-A5BT-01 15 75981700 75981700 G A CSPG4 Missense_Mutation p.T569M 0.15 deleterious(0) probably_damaging(0.985) TCGA-FD-A5BT-01 16 20749188 20749188 G C THUMPD1 Nonsense_Mutation p.S166* 0.15 TCGA-FD-A5BT-01 16 2752370 2752370 C A KCTD5 Missense_Mutation p.S189Y 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-FD-A5BT-01 16 48304149 48304149 G A LONP2 Missense_Mutation p.G402E 0.06 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 16 50354235 50354235 C T BRD7 Silent p.Q561Q 0.12 TCGA-FD-A5BT-01 16 735302 735302 G A WDR24 Silent p.I658I 0.08 TCGA-FD-A5BT-01 16 74750318 74750318 C T FA2H Silent p.S322S 0.12 TCGA-FD-A5BT-01 16 89350973 89350973 G A ANKRD11 Silent p.Y659Y 0.11 TCGA-FD-A5BT-01 16 89838138 89838138 G C FANCA Nonsense_Mutation p.S700* 0.09 TCGA-FD-A5BT-01 17 1183553 1183553 G A TUSC5 Silent p.A86A 0.19 TCGA-FD-A5BT-01 17 27004760 27004760 G A SUPT6H Missense_Mutation p.E309K 0.07 tolerated(0.64) benign(0.168) TCGA-FD-A5BT-01 17 28618492 28618492 C G BLMH Missense_Mutation p.Q16H 0.06 tolerated(0.09) benign(0.001) TCGA-FD-A5BT-01 17 35538222 35538222 C T ACACA Missense_Mutation p.D1618N 0.05 tolerated(0.12) probably_damaging(0.985) TCGA-FD-A5BT-01 17 4646734 4646734 C T ZMYND15 Silent p.L427L 0.06 TCGA-FD-A5BT-01 17 73732376 73732376 G A ITGB4 Missense_Mutation p.C590Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BT-01 17 76481838 76481838 G A DNAH17 Missense_Mutation p.A2412V 0.10 benign(0.085) TCGA-FD-A5BT-01 17 78293187 78293187 G A RNF213 Intron 0.11 TCGA-FD-A5BT-01 18 33739944 33739944 C T ELP2 Silent p.L617L 0.07 TCGA-FD-A5BT-01 19 12430425 12430425 C T ZNF563 Silent p.E138E 0.14 TCGA-FD-A5BT-01 19 12430445 12430445 C T ZNF563 Missense_Mutation p.E132K 0.11 tolerated(0.12) possibly_damaging(0.818) TCGA-FD-A5BT-01 19 13919931 13919931 G T ZSWIM4 Silent p.L303L 0.11 TCGA-FD-A5BT-01 19 15297741 15297741 G C NOTCH3 Silent p.V633V 0.15 TCGA-FD-A5BT-01 19 23941554 23941554 C G ZNF681 5'UTR 0.08 TCGA-FD-A5BT-01 19 4237029 4237029 G - EBI3 Frame_Shift_Del p.E213Nfs*2 0.15 TCGA-FD-A5BT-01 19 43579765 43579765 G A PSG2 Silent p.S150S 0.17 TCGA-FD-A5BT-01 19 43762600 43762600 C A PSG9 Missense_Mutation p.D333Y 0.20 deleterious(0.02) possibly_damaging(0.855) TCGA-FD-A5BT-01 19 4510855 4510855 G A PLIN4 Silent p.N1025N 0.15 TCGA-FD-A5BT-01 19 47725137 47725137 C G BBC3 Missense_Mutation p.E203Q 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-FD-A5BT-01 19 51298100 51298100 C G ACPT Silent p.L348L 0.27 TCGA-FD-A5BT-01 19 6444307 6444307 C T SLC25A23 Silent p.L359L 0.18 TCGA-FD-A5BT-01 19 9965125 9965125 G A OLFM2 Missense_Mutation p.R368C 0.33 deleterious(0) probably_damaging(0.997) TCGA-FD-A5BT-01 1 108742638 108742638 G T SLC25A24 Silent p.I41I 0.32 TCGA-FD-A5BT-01 1 111145939 111145939 T C KCNA2 Missense_Mutation p.Y489C 0.09 tolerated_low_confidence(0.27) benign(0.319) TCGA-FD-A5BT-01 1 113212635 113212635 C G CAPZA1 Missense_Mutation p.Q248E 0.12 tolerated(0.07) benign(0.033) TCGA-FD-A5BT-01 1 113252905 113252905 G C PPM1J Silent p.V466V 0.10 TCGA-FD-A5BT-01 1 150204216 150204216 C G ANP32E Missense_Mutation p.E35Q 0.15 deleterious(0.02) probably_damaging(0.973) TCGA-FD-A5BT-01 1 150238948 150238948 G A APH1A Nonsense_Mutation p.Q240* 0.10 TCGA-FD-A5BT-01 1 150801570 150801570 T C ARNT Missense_Mutation p.Q389R 0.22 deleterious(0.02) benign(0.026) TCGA-FD-A5BT-01 1 152278758 152278758 A G FLG Silent p.S2868S 0.05 TCGA-FD-A5BT-01 1 154246432 154246432 C G HAX1 Missense_Mutation p.H167D 0.10 tolerated(0.21) benign(0.002) TCGA-FD-A5BT-01 1 159779996 159779996 G T FCRL6 Missense_Mutation p.W333C 0.09 deleterious(0.03) probably_damaging(0.986) TCGA-FD-A5BT-01 1 167871274 167871274 C G ADCY10 Missense_Mutation p.G91A 0.05 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 1 169484782 169484782 G C F5 Missense_Mutation p.S2143C 0.16 deleterious(0) probably_damaging(0.99) TCGA-FD-A5BT-01 1 201437671 201437671 C T PHLDA3 Missense_Mutation p.E82K 0.12 deleterious(0) probably_damaging(0.987) TCGA-FD-A5BT-01 1 202407109 202407109 C T PPP1R12B Missense_Mutation p.S472F 0.11 deleterious(0) possibly_damaging(0.653) TCGA-FD-A5BT-01 1 203681195 203681195 G C ATP2B4 Silent p.L713L 0.14 TCGA-FD-A5BT-01 1 22922654 22922654 C G EPHA8 Missense_Mutation p.Q585E 0.10 tolerated(0.19) benign(0.218) TCGA-FD-A5BT-01 1 237946988 237946988 T A RYR2 Missense_Mutation p.N3992K 0.33 probably_damaging(0.998) TCGA-FD-A5BT-01 1 25717408 25717408 T C RHCE Splice_Site p.X212_splice 0.07 TCGA-FD-A5BT-01 1 79383369 79383369 C T ELTD1 Missense_Mutation p.E567K 0.21 tolerated(0.15) benign(0.322) TCGA-FD-A5BT-01 20 24944656 24944656 G C APMAP Silent p.L348L 0.17 TCGA-FD-A5BT-01 20 3240184 3240184 G C C20orf194 Missense_Mutation p.I999M 0.08 deleterious(0.04) benign(0.029) TCGA-FD-A5BT-01 20 45867834 45867834 G A ZMYND8 Missense_Mutation p.P778L 0.06 tolerated_low_confidence(0.06) benign(0.057) TCGA-FD-A5BT-01 20 8769120 8769120 G A PLCB1 Missense_Mutation p.A1046T 0.33 tolerated(0.06) possibly_damaging(0.752) TCGA-FD-A5BT-01 21 30426392 30426392 G A USP16 Missense_Mutation p.E786K 0.17 tolerated(0.05) possibly_damaging(0.672) TCGA-FD-A5BT-01 22 29533567 29533567 C A KREMEN1 Missense_Mutation p.P290Q 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 22 39918623 39918623 A G ATF4 3'UTR 0.62 TCGA-FD-A5BT-01 2 116520170 116520170 C T DPP10 Missense_Mutation p.T370M 0.11 tolerated(0.13) benign(0.066) TCGA-FD-A5BT-01 2 155566291 155566291 C T KCNJ3 Silent p.F293F 0.07 TCGA-FD-A5BT-01 2 171056743 171056743 G A MYO3B Missense_Mutation p.M90I 0.13 tolerated(0.23) benign(0.034) TCGA-FD-A5BT-01 2 171300530 171300530 C T MYO3B Missense_Mutation p.P902S 0.07 tolerated(0.43) benign(0.074) TCGA-FD-A5BT-01 2 172952885 172952885 G A DLX1 Missense_Mutation p.G223E 0.09 tolerated(0.17) benign(0.322) TCGA-FD-A5BT-01 2 179605187 179605187 T C TTN Missense_Mutation p.Q4258R 0.15 TCGA-FD-A5BT-01 2 179730590 179730590 C T CCDC141 Silent p.E876E 0.13 TCGA-FD-A5BT-01 2 180818987 180818987 C T CWC22 Missense_Mutation p.R545Q 0.18 deleterious(0) possibly_damaging(0.871) TCGA-FD-A5BT-01 2 187692864 187692864 C G ZSWIM2 Missense_Mutation p.W583C 0.17 deleterious(0.02) possibly_damaging(0.781) TCGA-FD-A5BT-01 2 189433990 189433990 G A GULP1 Missense_Mutation p.G142S 0.13 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 2 19553061 19553061 G A OSR1 Missense_Mutation p.S169F 0.21 deleterious(0.05) possibly_damaging(0.753) TCGA-FD-A5BT-01 2 218712347 218712347 G A TNS1 Missense_Mutation p.P840S 0.11 tolerated(0.15) benign(0.003) TCGA-FD-A5BT-01 2 220087388 220087388 C T ATG9A Silent p.Q609Q 0.14 TCGA-FD-A5BT-01 2 238280897 238280897 T C COL6A3 Missense_Mutation p.I1255V 0.15 possibly_damaging(0.824) TCGA-FD-A5BT-01 2 240078424 240078424 G A HDAC4 Silent p.S219S 0.19 TCGA-FD-A5BT-01 2 32842873 32842873 G T BIRC6 Nonsense_Mutation p.E4826* 0.15 TCGA-FD-A5BT-01 3 112998769 112998769 C T BOC Missense_Mutation p.R707C 0.09 deleterious(0) possibly_damaging(0.816) TCGA-FD-A5BT-01 3 127786357 127786357 G A SEC61A1 Missense_Mutation p.D357N 0.08 tolerated(0.14) possibly_damaging(0.56) TCGA-FD-A5BT-01 3 127786858 127786858 G A SEC61A1 Silent p.V400V 0.09 TCGA-FD-A5BT-01 3 170588008 170588008 A G RPL22L1 5'UTR 0.16 TCGA-FD-A5BT-01 3 186572042 186572042 C T ADIPOQ Missense_Mutation p.P95L 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A5BT-01 3 194118298 194118298 G A GP5 Silent p.F238F 0.14 TCGA-FD-A5BT-01 3 31665270 31665270 G T STT3B Missense_Mutation p.M548I 0.10 tolerated(0.64) benign(0.209) TCGA-FD-A5BT-01 3 38597213 38597213 C G SCN5A Missense_Mutation p.K1492N 0.06 deleterious(0.03) possibly_damaging(0.678) TCGA-FD-A5BT-01 3 46757143 46757143 C T PRSS50 Missense_Mutation p.E118K 0.20 tolerated(0.06) probably_damaging(0.971) TCGA-FD-A5BT-01 3 49547866 49547866 G C DAG1 5'UTR 0.18 TCGA-FD-A5BT-01 3 51992348 51992348 G C PCBP4 Missense_Mutation p.S314C 0.23 deleterious(0.05) probably_damaging(0.962) TCGA-FD-A5BT-01 3 52183972 52183972 G C POC1A Silent p.V45V 0.08 TCGA-FD-A5BT-01 3 77530275 77530275 C A ROBO2 Missense_Mutation p.S207Y 0.10 deleterious(0.02) possibly_damaging(0.798) TCGA-FD-A5BT-01 3 87309167 87309167 C G POU1F1 Silent p.L277L 0.10 TCGA-FD-A5BT-01 3 9425935 9425935 T C THUMPD3 Silent p.A425A 0.15 TCGA-FD-A5BT-01 4 187455004 187455004 G A MTNR1A Silent p.L298L 0.10 TCGA-FD-A5BT-01 4 2306151 2306151 G C ZFYVE28 Nonsense_Mutation p.S639* 0.07 TCGA-FD-A5BT-01 4 36081868 36081868 C T ARAP2 Silent p.T1526T 0.19 TCGA-FD-A5BT-01 4 52917885 52917885 G A SPATA18 Silent p.L5L 0.14 TCGA-FD-A5BT-01 4 54232191 54232191 G A SCFD2 5'UTR 0.20 TCGA-FD-A5BT-01 4 5733206 5733206 G A EVC Missense_Mutation p.V147I 0.12 tolerated(0.35) benign(0.009) TCGA-FD-A5BT-01 4 57888331 57888331 C T POLR2B Missense_Mutation p.R812C 0.09 deleterious(0) probably_damaging(0.992) TCGA-FD-A5BT-01 5 137654926 137654926 C T CDC25C Silent p.L199L 0.12 TCGA-FD-A5BT-01 5 140811616 140811616 G A PCDHGA12 Silent p.P430P 0.11 TCGA-FD-A5BT-01 5 154308191 154308191 C T GEMIN5 Silent p.L270L 0.17 TCGA-FD-A5BT-01 5 180622175 180622175 G C TRIM7 Missense_Mutation p.I509M 0.10 tolerated(0.06) probably_damaging(0.978) TCGA-FD-A5BT-01 6 30881670 30881670 C G GTF2H4 Missense_Mutation p.F433L 0.11 deleterious(0.01) benign(0.101) TCGA-FD-A5BT-01 6 31083988 31083988 A G CDSN Silent p.T468T 0.09 TCGA-FD-A5BT-01 7 140476853 140476853 C T BRAF Missense_Mutation p.G518D 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A5BT-01 7 148876736 148876736 A G ZNF398 Missense_Mutation p.N591S 0.13 tolerated(1) benign(0) TCGA-FD-A5BT-01 7 15599842 15599842 G C AGMO Missense_Mutation p.L61V 0.11 tolerated(0.5) benign(0.001) TCGA-FD-A5BT-01 7 24784361 24784361 G A DFNA5 Missense_Mutation p.S75L 0.08 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BT-01 7 6631278 6631278 G C C7orf26 Missense_Mutation p.R65T 0.06 deleterious(0.04) benign(0.402) TCGA-FD-A5BT-01 7 71134994 71134994 G C WBSCR17 Missense_Mutation p.R435T 0.09 tolerated(0.12) benign(0.002) TCGA-FD-A5BT-01 7 7480461 7480461 T C COL28A1 Missense_Mutation p.N561S 0.08 tolerated(0.34) probably_damaging(0.944) TCGA-FD-A5BT-01 7 75145106 75145106 C T Y_RNA 5'Flank 0.07 TCGA-FD-A5BT-01 7 91726934 91726934 G C AKAP9 Missense_Mutation p.R3478T 0.16 probably_damaging(0.998) TCGA-FD-A5BT-01 8 103340046 103340046 G T UBR5 Missense_Mutation p.Q469K 0.26 tolerated(0.39) benign(0.334) TCGA-FD-A5BT-01 8 144889733 144889733 C G SCRIB Missense_Mutation p.E723Q 0.28 probably_damaging(0.996) TCGA-FD-A5BT-01 8 28827755 28827755 G T HMBOX1 Silent p.G73G 0.10 TCGA-FD-A5BT-01 8 60031503 60031503 G A TOX Missense_Mutation p.A15V 0.19 tolerated(0.5) benign(0.018) TCGA-FD-A5BT-01 9 100076755 100076755 C T CCDC180 Silent p.L224L 0.08 TCGA-FD-A5BT-01 9 114986147 114986147 G C PTBP3 Nonsense_Mutation p.S554* 0.23 TCGA-FD-A5BT-01 9 134343004 134343004 C T PRRC2B Missense_Mutation p.P592L 0.12 tolerated(0.06) benign(0.097) TCGA-FD-A5BT-01 9 336616 336616 C A DOCK8 Silent p.A440A 0.21 TCGA-FD-A5BT-01 9 5805041 5805041 G A ERMP1 Missense_Mutation p.L634F 0.21 deleterious(0.01) benign(0.387) TCGA-FD-A5BT-01 9 6015556 6015556 C G RANBP6 Missense_Mutation p.E18Q 0.06 tolerated(1) benign(0.002) TCGA-FD-A5BT-01 9 97563232 97563232 C T C9orf3 Missense_Mutation p.R438W 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BT-01 X 128948631 128948631 C G ZDHHC9 Intron 0.09 TCGA-FD-A5BT-01 X 153060132 153060132 G C SSR4 5'UTR 0.24 TCGA-FD-A5BT-01 X 51488289 51488289 G C GSPT2 Missense_Mutation p.D523H 0.13 deleterious(0) probably_damaging(0.996) TCGA-FD-A5BT-01 X 67937195 67937195 G A STARD8 Missense_Mutation p.E147K 0.33 deleterious(0.01) possibly_damaging(0.461) TCGA-FD-A5BT-01 X 99662755 99662755 C T PCDH19 Missense_Mutation p.V281I 0.11 tolerated(0.49) benign(0.212) TCGA-FD-A5BU-01 10 104157342 104157342 G C NFKB2 Silent p.L187L 0.21 TCGA-FD-A5BU-01 10 115350589 115350589 G A NRAP Silent p.V1568V 0.13 TCGA-FD-A5BU-01 10 16962055 16962055 G A CUBN Missense_Mutation p.P2243L 0.16 tolerated(0.11) benign(0.223) TCGA-FD-A5BU-01 10 50121576 50121576 C A LRRC18 Missense_Mutation p.A209S 0.19 tolerated(1) benign(0.001) TCGA-FD-A5BU-01 11 115099960 115099960 C T CADM1 Missense_Mutation p.M198I 0.17 deleterious(0) possibly_damaging(0.538) TCGA-FD-A5BU-01 11 128709889 128709889 C A KCNJ1 Missense_Mutation p.A103S 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BU-01 11 56409292 56409292 G C OR5AP2 Missense_Mutation p.F208L 0.12 tolerated(0.28) possibly_damaging(0.685) TCGA-FD-A5BU-01 11 66083067 66083067 G C CD248 Missense_Mutation p.R478G 0.21 deleterious_low_confidence(0.01) benign(0.017) TCGA-FD-A5BU-01 11 6623361 6623361 T C RRP8 Missense_Mutation p.S62G 0.22 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FD-A5BU-01 11 85701307 85701307 T A PICALM Missense_Mutation p.H465L 0.17 tolerated(0.68) benign(0.038) TCGA-FD-A5BU-01 12 101581175 101581175 C T SLC5A8 Missense_Mutation p.A318T 0.19 tolerated(0.07) possibly_damaging(0.512) TCGA-FD-A5BU-01 12 40114710 40114710 G C C12orf40 Missense_Mutation p.R539T 0.11 tolerated(0.26) benign(0.311) TCGA-FD-A5BU-01 12 49391296 49391296 T C DDN Missense_Mutation p.I455V 0.10 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-FD-A5BU-01 12 49445636 49445637 - G KMT2D Frame_Shift_Ins p.P611Sfs*3 0.09 TCGA-FD-A5BU-01 12 55715127 55715127 C T OR6C1 Silent p.I248I 0.24 TCGA-FD-A5BU-01 12 76783456 76783456 C G OSBPL8 Missense_Mutation p.D441H 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A5BU-01 13 102220117 102220117 C A ITGBL1 Nonsense_Mutation p.Y128* 0.19 TCGA-FD-A5BU-01 14 81304579 81304579 G A CEP128 Missense_Mutation p.S298L 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A5BU-01 14 88945324 88945324 C A PTPN21 Missense_Mutation p.R817S 0.15 deleterious(0) possibly_damaging(0.576) TCGA-FD-A5BU-01 15 48057216 48057216 G A SEMA6D Missense_Mutation p.V464I 0.22 tolerated(0.23) benign(0.016) TCGA-FD-A5BU-01 15 50168644 50168644 C T ATP8B4 Missense_Mutation p.R953H 0.18 deleterious(0.02) benign(0.003) TCGA-FD-A5BU-01 15 65411074 65411074 G A PDCD7 Missense_Mutation p.T480I 0.16 deleterious(0) benign(0.104) TCGA-FD-A5BU-01 17 10309470 10309470 C A MYH8 Missense_Mutation p.G774C 0.28 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BU-01 17 18022407 18022407 C T MYO15A Missense_Mutation p.A98V 0.33 probably_damaging(0.981) TCGA-FD-A5BU-01 17 37881332 37881332 G A ERBB2 Missense_Mutation p.V842I 0.12 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BU-01 18 70205571 70205571 G C CBLN2 Missense_Mutation p.A172G 0.15 deleterious(0) probably_damaging(0.996) TCGA-FD-A5BU-01 18 74963166 74963166 C T GALR1 Missense_Mutation p.A221V 0.15 tolerated(0.16) benign(0.1) TCGA-FD-A5BU-01 18 9134187 9134188 - G NDUFV2 Frame_Shift_Ins p.R222Tfs*5 0.18 TCGA-FD-A5BU-01 19 18976405 18976405 G A UPF1 Missense_Mutation p.G1019R 0.18 tolerated(0.31) benign(0.002) TCGA-FD-A5BU-01 19 3779710 3779710 C T MATK Silent p.E277E 0.12 TCGA-FD-A5BU-01 19 4432066 4432066 G T CHAF1A Missense_Mutation p.V689L 0.20 tolerated(0.08) possibly_damaging(0.498) TCGA-FD-A5BU-01 19 48551636 48551636 G T PLA2G4C Nonsense_Mutation p.Y540* 0.29 TCGA-FD-A5BU-01 19 48647149 48647149 G A LIG1 Missense_Mutation p.P283L 0.18 tolerated(0.29) benign(0.003) TCGA-FD-A5BU-01 19 621793 621793 C A POLRMT Silent p.A635A 0.21 TCGA-FD-A5BU-01 1 117503945 117503945 G T PTGFRN Missense_Mutation p.V432L 0.26 tolerated(0.09) benign(0.009) TCGA-FD-A5BU-01 1 154574846 154574846 C T ADAR Missense_Mutation p.R91K 0.16 tolerated(0.37) benign(0.017) TCGA-FD-A5BU-01 1 155291600 155291600 C T RUSC1 Silent p.L12L 0.06 TCGA-FD-A5BU-01 1 155292044 155292044 C T RUSC1 Silent p.F160F 0.18 TCGA-FD-A5BU-01 1 171303598 171303598 C A FMO4 Silent p.L292L 0.12 TCGA-FD-A5BU-01 1 171605630 171605630 A G MYOC Missense_Mutation p.I317T 0.13 deleterious(0.02) benign(0.099) TCGA-FD-A5BU-01 1 19439171 19439171 C T UBR4 Missense_Mutation p.C3883Y 0.17 probably_damaging(0.962) TCGA-FD-A5BU-01 1 216052315 216052315 C T USH2A Silent p.L2783L 0.31 TCGA-FD-A5BU-01 1 46501254 46501254 C A MAST2 Missense_Mutation p.T1638N 0.16 deleterious_low_confidence(0.03) benign(0.105) TCGA-FD-A5BU-01 20 3672227 3672227 G A SIGLEC1 Missense_Mutation p.P1451S 0.07 deleterious(0) probably_damaging(1) TCGA-FD-A5BU-01 20 42311461 42311461 A G MYBL2 Missense_Mutation p.R72G 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A5BU-01 20 43251684 43251684 G A ADA Silent p.H214H 0.11 TCGA-FD-A5BU-01 21 46101888 46101888 G - KRTAP12-1 Frame_Shift_Del p.Q51Sfs*8 0.10 TCGA-FD-A5BU-01 22 30038263 30038263 G T NF2 Missense_Mutation p.V146F 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-FD-A5BU-01 2 145147383 145147383 C T ZEB2 Missense_Mutation p.E1094K 0.16 deleterious(0.02) probably_damaging(0.98) TCGA-FD-A5BU-01 2 178098806 178098806 G A NFE2L2 Missense_Mutation p.T80I 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A5BU-01 2 200137210 200137210 C A SATB2 Missense_Mutation p.Q642H 0.19 deleterious(0) probably_damaging(0.979) TCGA-FD-A5BU-01 2 231090589 231090589 G A SP140 Missense_Mutation p.M10I 0.27 deleterious(0.01) benign(0) TCGA-FD-A5BU-01 2 25978935 25978935 C T ASXL2 Missense_Mutation p.E330K 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A5BU-01 2 25978974 25978974 C G ASXL2 Missense_Mutation p.D317H 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A5BU-01 2 28634949 28634950 - C FOSL2 Frame_Shift_Ins p.L206Pfs*53 0.15 TCGA-FD-A5BU-01 3 120320143 120320143 G A NDUFB4 Intron 0.19 TCGA-FD-A5BU-01 3 14549069 14549069 G A GRIP2 Intron 0.18 TCGA-FD-A5BU-01 3 193855884 193855885 - GG HES1 Frame_Shift_Ins p.A237Gfs*80 0.15 TCGA-FD-A5BU-01 3 194991370 194991370 G C XXYLT1 Missense_Mutation p.H140D 0.43 deleterious(0.01) benign(0.055) TCGA-FD-A5BU-01 4 123140664 123140664 G A KIAA1109 Missense_Mutation p.R806H 0.14 probably_damaging(0.997) TCGA-FD-A5BU-01 4 71275637 71275637 G A PROL1 Missense_Mutation p.A198T 0.17 tolerated_low_confidence(1) unknown(0) TCGA-FD-A5BU-01 5 13830162 13830162 G A DNAH5 Silent p.N2074N 0.19 TCGA-FD-A5BU-01 5 140794390 140794390 G A PCDHGA10 Missense_Mutation p.V550M 0.38 tolerated_low_confidence(0.05) possibly_damaging(0.694) TCGA-FD-A5BU-01 5 176939803 176939803 G A DDX41 Silent p.A459A 0.32 TCGA-FD-A5BU-01 5 178369781 178369781 G A ZNF454 5'UTR 0.33 TCGA-FD-A5BU-01 5 178413884 178413884 G A GRM6 Silent p.G485G 0.47 TCGA-FD-A5BU-01 6 26199198 26199198 C G HIST1H2AD Missense_Mutation p.E92Q 0.25 deleterious_low_confidence(0.02) probably_damaging(0.916) TCGA-FD-A5BU-01 6 27219022 27219022 C A PRSS16 Silent p.T232T 0.21 TCGA-FD-A5BU-01 6 71235927 71235927 G T FAM135A Missense_Mutation p.S1047I 0.12 deleterious(0) possibly_damaging(0.797) TCGA-FD-A5BU-01 7 104714099 104714099 A T KMT2E Missense_Mutation p.Q177H 0.12 tolerated(0.06) benign(0.216) TCGA-FD-A5BU-01 7 148769115 148769115 C T ZNF786 Missense_Mutation p.R250H 0.24 tolerated(0.46) benign(0.086) TCGA-FD-A5BU-01 7 150417295 150417295 C T GIMAP1 Missense_Mutation p.T68M 0.16 tolerated(0.12) benign(0.028) TCGA-FD-A5BU-01 7 51092857 51092857 T C COBL Silent p.Q1239Q 0.05 TCGA-FD-A5BU-01 7 90708780 90708780 G C CDK14 Missense_Mutation p.R362T 0.25 tolerated(0.57) benign(0.07) TCGA-FD-A5BU-01 8 53077746 53077746 G A ST18 Missense_Mutation p.P415L 0.17 deleterious(0.02) probably_damaging(1) TCGA-FD-A5BU-01 8 57224804 57224804 G A SDR16C5 Missense_Mutation p.A126V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A5BU-01 9 117827169 117827169 C T TNC Missense_Mutation p.V1082M 0.23 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BU-01 9 135781127 135781127 G A TSC1 Missense_Mutation p.P613L 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A5BU-01 9 21409674 21409674 G T IFNA8 Missense_Mutation p.V167F 0.05 deleterious(0) probably_damaging(0.995) TCGA-FD-A5BU-01 9 325718 325718 A G DOCK8 Missense_Mutation p.D292G 0.47 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BU-01 X 105152792 105152792 G - NRK Frame_Shift_Del p.E389Nfs*42 0.16 TCGA-FD-A5BU-01 X 135328280 135328280 T C MAP7D3 Missense_Mutation p.D66G 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-FD-A5BU-01 X 135453499 135453499 A G GPR112 Missense_Mutation p.D2470G 0.33 deleterious(0.01) benign(0.367) TCGA-FD-A5BU-01 X 148048408 148048408 T C AFF2 Missense_Mutation p.I1001T 0.24 tolerated(0.65) benign(0.001) TCGA-FD-A5BU-01 X 154091365 154091365 A T F8 Missense_Mutation p.D2189E 0.25 deleterious(0) probably_damaging(0.965) TCGA-FD-A5BU-01 X 2609969 2609969 T G CD99 Intron 0.27 TCGA-FD-A5BU-01 X 30269207 30269207 G T MAGEB1 Silent p.G199G 0.19 TCGA-FD-A5BU-01 X 46510748 46510748 C A SLC9A7 Intron 0.18 TCGA-FD-A5BU-01 X 69715265 69715265 C A DLG3 Missense_Mutation p.P594Q 0.17 deleterious(0.03) benign(0.244) TCGA-FD-A5BU-01 X 73065233 73065233 C T XIST RNA 0.23 TCGA-FD-A5BV-01 10 105206892 105206892 G A CALHM2 3'UTR 0.42 TCGA-FD-A5BV-01 10 118365018 118365018 A T PNLIPRP1 Missense_Mutation p.K431N 0.20 deleterious(0.01) benign(0.072) TCGA-FD-A5BV-01 10 12197794 12197794 G C SEC61A2 Missense_Mutation p.L160F 0.04 tolerated(0.09) possibly_damaging(0.492) TCGA-FD-A5BV-01 10 129209120 129209120 G A DOCK1 Missense_Mutation p.E1433K 0.27 deleterious(0.04) possibly_damaging(0.474) TCGA-FD-A5BV-01 10 15255038 15255038 G C FAM171A1 Missense_Mutation p.P850R 0.11 deleterious(0.01) probably_damaging(0.933) TCGA-FD-A5BV-01 10 70451645 70451645 G A TET1 3'UTR 0.42 TCGA-FD-A5BV-01 11 104774215 104774215 T A RP11-693N9.2 RNA 0.44 TCGA-FD-A5BV-01 11 1651512 1651512 G T KRTAP5-5 Missense_Mutation p.G148C 0.57 tolerated_low_confidence(0.25) unknown(0) TCGA-FD-A5BV-01 11 5444283 5444283 G T OR51Q1 Missense_Mutation p.A285S 0.11 deleterious(0.03) benign(0.137) TCGA-FD-A5BV-01 11 55322835 55322835 G T OR4C15 Missense_Mutation p.M351I 0.45 tolerated_low_confidence(0.58) benign(0.002) TCGA-FD-A5BV-01 11 55659202 55659202 G C TRIM51 3'UTR 0.23 TCGA-FD-A5BV-01 11 62592764 62592764 C G STX5 Silent p.V196V 0.25 TCGA-FD-A5BV-01 12 123498511 123498511 C G PITPNM2 Missense_Mutation p.G53R 0.25 deleterious(0) probably_damaging(1) TCGA-FD-A5BV-01 12 125834311 125834311 C T TMEM132B Silent p.S122S 0.36 TCGA-FD-A5BV-01 12 129278708 129278708 C G SLC15A4 3'UTR 0.58 TCGA-FD-A5BV-01 12 23757434 23757434 C T SOX5 Missense_Mutation p.V351I 0.32 tolerated(0.27) possibly_damaging(0.531) TCGA-FD-A5BV-01 12 40699705 40699705 T A LRRK2 Nonsense_Mutation p.L1299* 0.46 TCGA-FD-A5BV-01 12 49444932 49444933 - G KMT2D Frame_Shift_Ins p.R845Pfs*3 0.18 TCGA-FD-A5BV-01 12 5020572 5020572 G T KCNA1 Missense_Mutation p.D10Y 0.44 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FD-A5BV-01 12 58204204 58204204 C T AVIL Missense_Mutation p.R230H 0.13 deleterious(0.02) benign(0.04) TCGA-FD-A5BV-01 13 22067414 22067414 T C MICU2 Missense_Mutation p.K427E 0.09 deleterious(0.01) benign(0.211) TCGA-FD-A5BV-01 13 70681441 70681441 G T KLHL1 Missense_Mutation p.P131T 0.13 tolerated_low_confidence(0.2) benign(0.014) TCGA-FD-A5BV-01 14 105353392 105353392 G C CEP170B Missense_Mutation p.G939A 0.11 tolerated(0.39) benign(0.006) TCGA-FD-A5BV-01 14 22465936 22465936 C A TRAV17 Silent p.L4L 0.11 TCGA-FD-A5BV-01 14 23869939 23869939 G A MYH6 Silent p.I463I 0.16 TCGA-FD-A5BV-01 14 52509029 52509029 A T NID2 Missense_Mutation p.L540H 0.53 deleterious(0) probably_damaging(0.995) TCGA-FD-A5BV-01 15 67713899 67713899 G A IQCH Missense_Mutation p.S830N 0.16 tolerated(0.57) benign(0.01) TCGA-FD-A5BV-01 15 70959764 70959764 C T UACA Missense_Mutation p.E1087K 0.52 tolerated(0.14) possibly_damaging(0.733) TCGA-FD-A5BV-01 15 72197348 72197348 C A MYO9A Splice_Site p.X896_splice 0.15 TCGA-FD-A5BV-01 15 76225218 76225218 G A FBXO22 Silent p.R329R 0.70 TCGA-FD-A5BV-01 15 84611832 84611832 A G ADAMTSL3 Missense_Mutation p.K830E 0.24 tolerated(0.3) benign(0.11) TCGA-FD-A5BV-01 15 93588525 93588525 G T RGMA Silent p.P360P 0.15 TCGA-FD-A5BV-01 16 1536186 1536186 G A PTX4 Silent p.P392P 0.32 TCGA-FD-A5BV-01 16 20491892 20491892 C G ACSM2A Intron 0.15 TCGA-FD-A5BV-01 16 2284316 2284316 G A E4F1 Missense_Mutation p.R507H 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-FD-A5BV-01 16 30081605 30081605 T G ALDOA 3'UTR 0.46 TCGA-FD-A5BV-01 16 31282327 31282327 C G ITGAM Missense_Mutation p.S160R 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BV-01 16 31288342 31288342 G A ITGAM Silent p.V395V 0.24 TCGA-FD-A5BV-01 16 56553680 56553680 G T BBS2 Missense_Mutation p.A32E 0.09 deleterious(0) benign(0.392) TCGA-FD-A5BV-01 17 28749853 28749853 C T CPD Missense_Mutation p.S490L 0.08 tolerated(0.24) benign(0.002) TCGA-FD-A5BV-01 17 46654070 46654070 C T HOXB4 3'UTR 0.40 TCGA-FD-A5BV-01 17 55079393 55079393 G A SCPEP1 Missense_Mutation p.V383M 0.10 tolerated(0.15) possibly_damaging(0.513) TCGA-FD-A5BV-01 17 60059727 60059727 T A MED13 Nonsense_Mutation p.K1213* 0.52 TCGA-FD-A5BV-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.66 deleterious(0) probably_damaging(0.997) TCGA-FD-A5BV-01 17 77044107 77044107 C T C1QTNF1 Silent p.S261S 0.30 TCGA-FD-A5BV-01 19 15806824 15806824 C G CYP4F12 Missense_Mutation p.I398M 0.09 deleterious(0.04) possibly_damaging(0.465) TCGA-FD-A5BV-01 19 40485867 40485867 A C PSMC4 Missense_Mutation p.K273Q 0.22 deleterious(0.01) possibly_damaging(0.75) TCGA-FD-A5BV-01 19 41512832 41512832 C A CYP2B6 Missense_Mutation p.F169L 0.62 tolerated(0.13) benign(0.011) TCGA-FD-A5BV-01 19 43234128 43234128 G T PSG3 Missense_Mutation p.P264T 0.43 tolerated(0.34) probably_damaging(0.938) TCGA-FD-A5BV-01 19 47151649 47151649 G C DACT3 3'UTR 0.20 TCGA-FD-A5BV-01 19 47423670 47423670 C T ARHGAP35 Missense_Mutation p.R580W 0.54 deleterious(0.01) possibly_damaging(0.613) TCGA-FD-A5BV-01 19 49633735 49633735 G A PPFIA3 Missense_Mutation p.R253Q 0.38 tolerated(0.23) benign(0.124) TCGA-FD-A5BV-01 19 52376113 52376113 A T ZNF577 Missense_Mutation p.I377K 0.21 tolerated(0.14) benign(0.001) TCGA-FD-A5BV-01 19 52543815 52543815 T G ZNF432 Missense_Mutation p.D55A 0.32 deleterious(0.05) benign(0.008) TCGA-FD-A5BV-01 19 54483149 54483149 C T CACNG8 Silent p.P132P 0.43 TCGA-FD-A5BV-01 19 9070121 9070121 T C MUC16 Silent p.E5775E 0.26 TCGA-FD-A5BV-01 1 112524689 112524689 C T KCND3 Silent p.E220E 0.46 TCGA-FD-A5BV-01 1 11579853 11579853 C T PTCHD2 Missense_Mutation p.R706C 0.20 deleterious(0.04) possibly_damaging(0.627) TCGA-FD-A5BV-01 1 156770276 156770276 G C PRCC 3'UTR 0.33 TCGA-FD-A5BV-01 1 158326330 158326330 T C CD1E Missense_Mutation p.I316T 0.18 tolerated(0.11) benign(0.275) TCGA-FD-A5BV-01 1 158585136 158585136 C T SPTA1 Missense_Mutation p.G2220R 0.27 deleterious(0.02) possibly_damaging(0.585) TCGA-FD-A5BV-01 1 16258615 16258615 C T SPEN Silent p.A1960A 0.39 TCGA-FD-A5BV-01 1 201926456 201926456 C - TIMM17A Frame_Shift_Del p.I26Lfs*19 0.35 TCGA-FD-A5BV-01 1 208206832 208206832 G A PLXNA2 Silent p.G1629G 0.56 TCGA-FD-A5BV-01 1 237947983 237947983 A G RYR2 Missense_Mutation p.K4324R 0.08 benign(0.003) TCGA-FD-A5BV-01 1 248458512 248458512 A C OR2T12 Silent p.A123A 0.43 TCGA-FD-A5BV-01 1 70385302 70385302 G T LRRC7 Intron 0.25 TCGA-FD-A5BV-01 20 50305670 50305670 G A ATP9A Silent p.S244S 0.39 TCGA-FD-A5BV-01 21 22804517 22804517 G A NCAM2 Missense_Mutation p.G524S 0.45 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BV-01 21 41455850 41455850 C T DSCAM Missense_Mutation p.G1406S 0.68 deleterious(0) probably_damaging(0.936) TCGA-FD-A5BV-01 21 43161573 43161573 C T RIPK4 Missense_Mutation p.G594R 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BV-01 21 47410901 47410901 A C COL6A1 Missense_Mutation p.Q355H 0.21 tolerated(0.06) unknown(0) TCGA-FD-A5BV-01 22 29737716 29737716 A T AP1B1 Missense_Mutation p.Y524N 0.15 deleterious(0) probably_damaging(0.96) TCGA-FD-A5BV-01 22 50280682 50280682 C T ZBED4 Silent p.C1124C 0.39 TCGA-FD-A5BV-01 2 119915771 119915771 C G C1QL2 Missense_Mutation p.M25I 0.20 deleterious(0.02) possibly_damaging(0.775) TCGA-FD-A5BV-01 2 120692428 120692428 G A PTPN4 Missense_Mutation p.G417S 0.33 tolerated(0.31) probably_damaging(0.984) TCGA-FD-A5BV-01 2 128088035 128088035 T C MAP3K2 Missense_Mutation p.E104G 0.62 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A5BV-01 2 178879081 178879081 T C PDE11A Missense_Mutation p.Q340R 0.83 deleterious(0) probably_damaging(0.932) TCGA-FD-A5BV-01 2 189599476 189599476 G T DIRC1 Missense_Mutation p.P58T 0.54 tolerated_low_confidence(0.09) benign(0.01) TCGA-FD-A5BV-01 2 27454929 27454929 G T CAD Nonsense_Mutation p.E828* 0.17 TCGA-FD-A5BV-01 2 27684153 27684153 C A IFT172 Missense_Mutation p.G809W 0.18 deleterious(0) possibly_damaging(0.641) TCGA-FD-A5BV-01 2 44508019 44508019 G C SLC3A1 Missense_Mutation p.A199P 0.07 deleterious(0.02) probably_damaging(0.985) TCGA-FD-A5BV-01 2 46525070 46525070 A G EPAS1 Missense_Mutation p.K7R 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A5BV-01 2 63831868 63831868 G A MDH1 Silent p.K197K 0.14 TCGA-FD-A5BV-01 2 90121953 90121953 G C IGKV1D-17 Missense_Mutation p.W57C 0.24 deleterious(0.01) probably_damaging(0.935) TCGA-FD-A5BV-01 3 119582338 119582338 C A GSK3B Nonsense_Mutation p.E355* 0.39 TCGA-FD-A5BV-01 3 123366245 123366245 A G MYLK Missense_Mutation p.V1482A 0.16 deleterious(0) possibly_damaging(0.72) TCGA-FD-A5BV-01 3 126224595 126224595 C G UROC1 Silent p.G254G 0.15 TCGA-FD-A5BV-01 3 131293969 131293969 G A CPNE4 Silent p.H291H 0.35 TCGA-FD-A5BV-01 3 132184909 132184909 A C DNAJC13 Missense_Mutation p.I655L 0.24 tolerated(0.19) benign(0.11) TCGA-FD-A5BV-01 3 179123066 179123066 T C GNB4 Silent p.V276V 0.13 TCGA-FD-A5BV-01 3 194118924 194118924 G T GP5 Silent p.R30R 0.39 TCGA-FD-A5BV-01 3 194336316 194336316 T C TMEM44 Silent p.K345K 0.15 TCGA-FD-A5BV-01 3 42915944 42915944 C A CYP8B1 Silent p.L455L 0.94 TCGA-FD-A5BV-01 3 46008897 46008897 C T FYCO1 Silent p.Q643Q 0.56 TCGA-FD-A5BV-01 3 96706439 96706439 A C EPHA6 Missense_Mutation p.Y239S 0.56 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BV-01 3 97356829 97356829 G A EPHA6 Missense_Mutation p.R896Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BV-01 4 114179250 114179250 C A ANK2 Silent p.I411I 0.47 TCGA-FD-A5BV-01 4 66189938 66189938 C T EPHA5 Splice_Site p.X1003_splice 0.07 TCGA-FD-A5BV-01 4 96171752 96171752 C A UNC5C Missense_Mutation p.D221Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BV-01 5 101627200 101627200 A G SLCO4C1 Missense_Mutation p.C156R 0.80 deleterious(0) possibly_damaging(0.905) TCGA-FD-A5BV-01 5 13701546 13701546 C A DNAH5 Splice_Site p.X4447_splice 0.22 TCGA-FD-A5BV-01 5 137654926 137654926 C T CDC25C Silent p.L199L 0.23 TCGA-FD-A5BV-01 5 13809193 13809193 C T DNAH5 Missense_Mutation p.R2571K 0.30 benign(0.22) TCGA-FD-A5BV-01 5 140237348 140237348 C T PCDHA10 Missense_Mutation p.A572V 0.14 tolerated_low_confidence(0.2) benign(0.006) TCGA-FD-A5BV-01 5 161128658 161128658 C T GABRA6 Missense_Mutation p.T414I 0.73 tolerated(0.35) benign(0.249) TCGA-FD-A5BV-01 5 179564993 179564993 G T RASGEF1C Silent p.P20P 0.45 TCGA-FD-A5BV-01 5 180472464 180472464 C A BTNL9 Intron 0.23 TCGA-FD-A5BV-01 5 31799378 31799378 C A PDZD2 Missense_Mutation p.A8D 0.08 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BV-01 5 34796132 34796132 G A RAI14 Missense_Mutation p.G89R 0.08 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BV-01 5 43175157 43175157 A C ZNF131 Missense_Mutation p.L564F 0.06 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-FD-A5BV-01 5 45396800 45396800 C T HCN1 Missense_Mutation p.G342R 0.26 deleterious(0.04) probably_damaging(0.967) TCGA-FD-A5BV-01 5 79058961 79058961 C A CMYA5 Silent p.T3828T 0.53 TCGA-FD-A5BV-01 5 79732657 79732659 GCG A ZFYVE16 Frame_Shift_Del p.R52Nfs*12 0.72 TCGA-FD-A5BV-01 6 112437148 112437148 C T LAMA4 Missense_Mutation p.R1677H 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A5BV-01 6 155458563 155458563 G A TIAM2 Missense_Mutation p.A483T 0.42 tolerated(0.49) benign(0.004) TCGA-FD-A5BV-01 6 32632651 32632651 C G HLA-DQB1 Missense_Mutation p.E101D 0.78 tolerated(0.06) benign(0.013) TCGA-FD-A5BV-01 6 35755644 35755644 G T CLPSL1 Missense_Mutation p.V75L 0.18 tolerated(0.2) benign(0.008) TCGA-FD-A5BV-01 6 51824738 51824738 G C PKHD1 Silent p.V1946V 0.27 TCGA-FD-A5BV-01 6 66053990 66053990 C T EYS Missense_Mutation p.V514M 0.38 deleterious(0.04) benign(0.083) TCGA-FD-A5BV-01 7 100856150 100856150 C A PLOD3 Missense_Mutation p.Q284H 0.57 tolerated(0.05) benign(0.163) TCGA-FD-A5BV-01 7 102016387 102016387 G T PRKRIP1 5'UTR 0.44 TCGA-FD-A5BV-01 7 135078988 135078988 G C CNOT4 Missense_Mutation p.Q437E 0.10 tolerated_low_confidence(0.15) benign(0.013) TCGA-FD-A5BV-01 7 14217703 14217703 C T DGKB Silent p.L733L 0.41 TCGA-FD-A5BV-01 7 20793050 20793050 T C ABCB5 Missense_Mutation p.I1166T 0.45 deleterious(0) probably_damaging(1) TCGA-FD-A5BV-01 7 42004424 42004424 C A GLI3 Missense_Mutation p.C1416F 0.41 tolerated_low_confidence(0.3) benign(0.003) TCGA-FD-A5BV-01 7 43830918 43830918 G A BLVRA Missense_Mutation p.E69K 0.08 tolerated(0.27) benign(0.07) TCGA-FD-A5BV-01 7 48654968 48654968 A G ABCA13 Silent p.K4944K 0.33 TCGA-FD-A5BV-01 7 70886019 70886019 G T WBSCR17 Missense_Mutation p.W297L 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A5BV-01 7 72093914 72093914 C T TYW1B Silent p.A151A 0.19 TCGA-FD-A5BV-01 7 75401271 75401271 G A CCL26 Missense_Mutation p.L42F 0.34 deleterious(0.02) probably_damaging(0.967) TCGA-FD-A5BV-01 7 7612950 7612950 C G MIOS Missense_Mutation p.L282V 0.40 deleterious(0.01) possibly_damaging(0.835) TCGA-FD-A5BV-01 8 110460481 110460481 T C PKHD1L1 Silent p.D1962D 0.22 TCGA-FD-A5BV-01 8 113988270 113988270 A G CSMD3 Missense_Mutation p.S380P 0.13 tolerated(0.3) benign(0.136) TCGA-FD-A5BV-01 8 134232956 134232956 G A WISP1 Missense_Mutation p.R161H 0.17 deleterious(0.02) probably_damaging(0.932) TCGA-FD-A5BV-01 8 139629158 139629158 C T COL22A1 Missense_Mutation p.R1290Q 0.49 unknown(0) TCGA-FD-A5BV-01 8 142367700 142367700 C T GPR20 Silent p.T108T 0.10 TCGA-FD-A5BV-01 8 2820117 2820117 T A CSMD1 Missense_Mutation p.S3167C 0.37 possibly_damaging(0.749) TCGA-FD-A5BV-01 8 69552698 69552698 C A C8orf34 Missense_Mutation p.A398D 0.26 deleterious(0.05) possibly_damaging(0.809) TCGA-FD-A5BV-01 8 77776783 77776783 G T ZFHX4 Missense_Mutation p.M3611I 0.19 benign(0.109) TCGA-FD-A5BV-01 9 126137569 126137569 G A CRB2 Missense_Mutation p.V1194M 0.85 tolerated(0.12) possibly_damaging(0.645) TCGA-FD-A5BV-01 9 140082505 140082505 C G ANAPC2 Silent p.R56R 0.11 TCGA-FD-A5BV-01 9 21971091 21971092 - C CDKN2A Frame_Shift_Ins p.F90Lfs*30 0.38 TCGA-FD-A5BV-01 9 35735158 35735160 CTG - CREB3 In_Frame_Del p.A164del 0.36 TCGA-FD-A5BV-01 9 40715973 40715973 C G FAM74A3 RNA 0.50 TCGA-FD-A5BV-01 9 84531715 84531715 C G SPATA31D5P RNA 0.14 TCGA-FD-A5BV-01 X 118220919 118220919 G C KIAA1210 Missense_Mutation p.P1425R 0.47 deleterious(0.04) probably_damaging(0.948) TCGA-FD-A5BV-01 X 128902392 128902392 C T XPNPEP2 Silent p.A652A 0.31 TCGA-FD-A5BV-01 X 135427031 135427031 C T GPR112 Missense_Mutation p.S389L 0.44 tolerated(0.25) benign(0.018) TCGA-FD-A5BV-01 X 14027008 14027008 G C GEMIN8 3'UTR 0.26 TCGA-FD-A5BV-01 X 140995899 140995899 G T MAGEC1 Missense_Mutation p.L903F 0.36 deleterious(0.01) unknown(0) TCGA-FD-A5BV-01 X 142967427 142967427 A T UBE2NL Missense_Mutation p.K75N 0.38 deleterious(0.01) possibly_damaging(0.464) TCGA-FD-A5BV-01 X 152958464 152958464 C G SLC6A8 Intron 0.16 TCGA-FD-A5BV-01 X 153688732 153688732 C T PLXNA3 Missense_Mutation p.P70L 0.41 deleterious(0) probably_damaging(1) TCGA-FD-A5BV-01 X 37027610 37027610 C A FAM47C Missense_Mutation p.S376Y 0.37 deleterious(0) probably_damaging(0.983) TCGA-FD-A5BV-01 X 44942711 44942712 - T KDM6A Frame_Shift_Ins p.L1098Ffs*5 0.26 TCGA-FD-A5BV-01 X 44969426 44969426 G T KDM6A Nonsense_Mutation p.E1370* 0.44 TCGA-FD-A5BV-01 X 47083022 47083022 C A CDK16 Missense_Mutation p.D96E 0.29 tolerated_low_confidence(0.4) benign(0.002) TCGA-FD-A5BV-01 X 64949312 64949312 G A MSN Missense_Mutation p.D69N 0.37 tolerated(0.07) benign(0.121) TCGA-FD-A5BV-01 X 69652259 69652259 C T GDPD2 Silent p.N521N 0.37 TCGA-FD-A5BV-01 X 74698808 74698808 A C ZDHHC15 Missense_Mutation p.I59R 0.60 deleterious(0.01) benign(0.221) TCGA-FD-A5BX-01 10 101487208 101487208 C A COX15 Nonsense_Mutation p.E129* 0.10 TCGA-FD-A5BX-01 10 103433334 103433334 C T FBXW4 Silent p.L151L 0.30 TCGA-FD-A5BX-01 10 103991486 103991486 C G PITX3 Missense_Mutation p.K60N 0.80 deleterious(0) benign(0.044) TCGA-FD-A5BX-01 10 104486809 104486809 C G SFXN2 Missense_Mutation p.S76W 0.28 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 10 105331530 105331530 C G NEURL1 Silent p.L200L 0.26 TCGA-FD-A5BX-01 10 128114450 128114450 G C C10orf90 Missense_Mutation p.Q695E 0.52 deleterious(0) probably_damaging(0.981) TCGA-FD-A5BX-01 10 129676575 129676575 C T CLRN3 Silent p.T173T 0.28 TCGA-FD-A5BX-01 10 134013861 134013861 G A DPYSL4 Silent p.G271G 0.24 TCGA-FD-A5BX-01 10 13749043 13749043 G A FRMD4A Missense_Mutation p.P277L 0.23 deleterious(0) possibly_damaging(0.752) TCGA-FD-A5BX-01 10 26432408 26432408 G A MYO3A Missense_Mutation p.R765K 0.25 tolerated(0.26) benign(0.115) TCGA-FD-A5BX-01 10 27012990 27012990 G C PDSS1 Missense_Mutation p.A257P 0.25 deleterious(0.02) probably_damaging(0.953) TCGA-FD-A5BX-01 10 29812539 29812539 C G SVIL Missense_Mutation p.E1002Q 0.20 deleterious_low_confidence(0) benign(0.21) TCGA-FD-A5BX-01 10 3172046 3172046 C T PFKP Silent p.T573T 0.21 TCGA-FD-A5BX-01 10 4884636 4884636 G T AKR1E2 Missense_Mutation p.Q259H 0.18 deleterious(0) probably_damaging(0.985) TCGA-FD-A5BX-01 10 70405861 70405861 G C TET1 Missense_Mutation p.Q1125H 0.18 deleterious(0.04) benign(0.024) TCGA-FD-A5BX-01 10 90699336 90699336 C G ACTA2 Missense_Mutation p.D246H 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A5BX-01 10 93244276 93244276 G C HECTD2 Missense_Mutation p.K278N 0.35 tolerated(0.19) benign(0.006) TCGA-FD-A5BX-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.13 TCGA-FD-A5BX-01 11 108276213 108276213 C G C11orf65 Missense_Mutation p.R168T 0.40 deleterious(0) possibly_damaging(0.888) TCGA-FD-A5BX-01 11 111957457 111957457 C G TIMM8B Silent p.L12L 0.50 TCGA-FD-A5BX-01 11 119031756 119031756 C T ABCG4 Silent p.F627F 0.36 TCGA-FD-A5BX-01 11 119031827 119031827 C T ABCG4 3'UTR 0.34 TCGA-FD-A5BX-01 11 12264240 12264240 A G MICAL2 Missense_Mutation p.N860S 0.24 tolerated_low_confidence(0.42) benign(0.043) TCGA-FD-A5BX-01 11 123676459 123676459 G A OR6M1 Missense_Mutation p.S200F 0.33 deleterious(0) probably_damaging(0.983) TCGA-FD-A5BX-01 11 126162883 126162883 C T TIRAP Silent p.F193F 0.14 TCGA-FD-A5BX-01 11 134022913 134022913 G A NCAPD3 Missense_Mutation p.P1475S 0.24 deleterious(0) probably_damaging(0.934) TCGA-FD-A5BX-01 11 193799 193799 G T SCGB1C1 Missense_Mutation p.G48V 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 11 28098656 28098656 C T KIF18A Silent p.L441L 0.38 TCGA-FD-A5BX-01 11 4626306 4626306 C G TRIM68 Intron 0.30 TCGA-FD-A5BX-01 11 46419135 46419135 G C AMBRA1 Silent p.V1164V 0.27 TCGA-FD-A5BX-01 11 5221700 5221700 G A OR51V1 Silent p.L77L 0.33 TCGA-FD-A5BX-01 11 552575 552575 C T LRRC56 Silent p.L396L 0.40 TCGA-FD-A5BX-01 11 57094292 57094292 G A SSRP1 Missense_Mutation p.S648L 0.30 tolerated(0.12) unknown(0) TCGA-FD-A5BX-01 11 5717547 5717547 G C TRIM22 Missense_Mutation p.D29H 0.18 deleterious(0.03) benign(0.16) TCGA-FD-A5BX-01 11 61511592 61511592 C T DAGLA Silent p.L920L 0.23 TCGA-FD-A5BX-01 11 63971674 63971674 G A STIP1 3'UTR 0.36 TCGA-FD-A5BX-01 11 64781688 64781688 C G ARL2 Silent p.L3L 0.26 TCGA-FD-A5BX-01 11 64781698 64781698 C T ARL2 Silent p.L7L 0.24 TCGA-FD-A5BX-01 11 65423357 65423357 G C RELA Missense_Mutation p.F309L 0.26 tolerated(0.09) benign(0.185) TCGA-FD-A5BX-01 11 66333631 66333633 CTC - CTSF In_Frame_Del p.E243del 0.24 TCGA-FD-A5BX-01 11 66454506 66454506 G C SPTBN2 Silent p.V2285V 0.28 TCGA-FD-A5BX-01 11 67560711 67560711 G A FAM86C2P RNA 0.26 TCGA-FD-A5BX-01 11 68343463 68343463 C T PPP6R3 Silent p.F499F 0.18 TCGA-FD-A5BX-01 11 7507225 7507225 G C OLFML1 Missense_Mutation p.R40P 0.22 tolerated(0.32) benign(0.159) TCGA-FD-A5BX-01 12 106977123 106977123 C T RP11-144F15.1 Intron 0.24 TCGA-FD-A5BX-01 12 107144526 107144526 C G RFX4 Missense_Mutation p.I639M 0.22 deleterious_low_confidence(0) possibly_damaging(0.509) TCGA-FD-A5BX-01 12 10782155 10782155 G A STYK1 Silent p.L190L 0.28 TCGA-FD-A5BX-01 12 109536371 109536371 C T UNG Silent p.N89N 0.19 TCGA-FD-A5BX-01 12 114793779 114793779 G A TBX5 Missense_Mutation p.S372L 0.16 tolerated(0.17) benign(0.048) TCGA-FD-A5BX-01 12 121779868 121779868 C A ANAPC5 Nonsense_Mutation p.E199* 0.26 TCGA-FD-A5BX-01 12 122437828 122437828 C T WDR66 Silent p.F1071F 0.11 TCGA-FD-A5BX-01 12 15636938 15636938 G A PTPRO Missense_Mutation p.D36N 0.40 deleterious_low_confidence(0.01) benign(0.127) TCGA-FD-A5BX-01 12 15637019 15637019 G A PTPRO Missense_Mutation p.E63K 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FD-A5BX-01 12 21069131 21069131 G A SLCO1B3 Missense_Mutation p.D687N 0.59 tolerated(0.3) benign(0.009) TCGA-FD-A5BX-01 12 25380275 25380275 T A KRAS Missense_Mutation p.Q61H 0.48 deleterious(0) benign(0.371) TCGA-FD-A5BX-01 12 27175537 27175537 C T MED21 Nonsense_Mutation p.Q9* 0.50 TCGA-FD-A5BX-01 12 31540569 31540569 C G DENND5B Missense_Mutation p.E1265Q 0.32 deleterious(0) probably_damaging(0.99) TCGA-FD-A5BX-01 12 48866508 48866508 G C ANP32D Missense_Mutation p.E21Q 0.21 deleterious(0.01) benign(0.179) TCGA-FD-A5BX-01 12 49422657 49422657 C A KMT2D Missense_Mutation p.G4779V 0.25 unknown(0) TCGA-FD-A5BX-01 12 49447425 49447425 C T KMT2D Splice_Site p.X225_splice 0.25 TCGA-FD-A5BX-01 12 50035810 50035810 G C PRPF40B Intron 0.39 TCGA-FD-A5BX-01 12 53162728 53162728 G A KRT76 Silent p.V562V 0.31 TCGA-FD-A5BX-01 12 56334743 56334743 G C DGKA Missense_Mutation p.L360F 0.22 tolerated(0.69) benign(0.001) TCGA-FD-A5BX-01 12 56335361 56335361 G C DGKA Missense_Mutation p.E415Q 0.24 tolerated(0.56) possibly_damaging(0.646) TCGA-FD-A5BX-01 12 56435913 56435913 C T RPS26 5'UTR 0.10 TCGA-FD-A5BX-01 12 56435914 56435914 C T RPS26 5'UTR 0.10 TCGA-FD-A5BX-01 12 56847525 56847525 C A MIP Silent p.V125V 0.35 TCGA-FD-A5BX-01 12 57423364 57423364 G A MYO1A Missense_Mutation p.S911F 0.19 deleterious(0) possibly_damaging(0.537) TCGA-FD-A5BX-01 12 6435720 6435720 C T PLEKHG6 Nonsense_Mutation p.Q551* 0.53 TCGA-FD-A5BX-01 12 66641487 66641487 C G IRAK3 Missense_Mutation p.L443V 0.32 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 12 8242793 8242793 G A NECAP1 Missense_Mutation p.E67K 0.31 deleterious(0.03) benign(0.317) TCGA-FD-A5BX-01 12 8242817 8242817 G A NECAP1 Missense_Mutation p.E75K 0.31 deleterious(0.03) benign(0.067) TCGA-FD-A5BX-01 12 82752591 82752591 G A METTL25 Missense_Mutation p.E83K 0.47 tolerated(0.35) benign(0.345) TCGA-FD-A5BX-01 12 89744761 89744761 C G DUSP6 Missense_Mutation p.E148Q 0.55 tolerated(0.06) benign(0.117) TCGA-FD-A5BX-01 12 96704910 96704910 C T CDK17 Missense_Mutation p.D155N 0.18 tolerated(0.27) benign(0.37) TCGA-FD-A5BX-01 13 20356840 20356840 G A PSPC1 Missense_Mutation p.R20C 0.24 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-FD-A5BX-01 13 20763647 20763647 A G GJB2 Missense_Mutation p.L25P 0.07 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BX-01 13 24304476 24304476 G C MIPEP 3'UTR 0.23 TCGA-FD-A5BX-01 13 25284984 25284984 C T ATP12A Silent p.L990L 0.10 TCGA-FD-A5BX-01 13 25399909 25399909 C T RNF17 Silent p.I748I 0.28 TCGA-FD-A5BX-01 13 31231834 31231834 C G USPL1 Silent p.A540A 0.25 TCGA-FD-A5BX-01 13 35733432 35733432 G C NBEA Missense_Mutation p.D1042H 0.27 deleterious_low_confidence(0.04) benign(0.268) TCGA-FD-A5BX-01 13 39587987 39587987 G C PROSER1 Missense_Mutation p.L468V 0.28 tolerated_low_confidence(0.18) benign(0.249) TCGA-FD-A5BX-01 13 48523157 48523157 C A SUCLA2 Missense_Mutation p.R412L 0.21 tolerated(0.05) benign(0.038) TCGA-FD-A5BX-01 13 76381694 76381694 C G LMO7 Silent p.P192P 0.29 TCGA-FD-A5BX-01 14 100405642 100405642 C T EML1 Missense_Mutation p.S786L 0.38 tolerated(0.05) benign(0.007) TCGA-FD-A5BX-01 14 101349355 101349355 C T RTL1 Missense_Mutation p.E591K 0.31 deleterious(0) probably_damaging(0.995) TCGA-FD-A5BX-01 14 103566869 103566869 G A EXOC3L4 Missense_Mutation p.E105K 0.19 tolerated(0.21) benign(0.012) TCGA-FD-A5BX-01 14 104641567 104641567 C T KIF26A Silent p.F814F 0.50 TCGA-FD-A5BX-01 14 20836992 20836992 C G TEP1 Missense_Mutation p.D2576H 0.12 deleterious(0) probably_damaging(0.988) TCGA-FD-A5BX-01 14 21490649 21490649 G C NDRG2 Missense_Mutation p.S42C 0.32 deleterious(0) possibly_damaging(0.874) TCGA-FD-A5BX-01 14 21795862 21795862 C T RPGRIP1 Missense_Mutation p.P931S 0.21 tolerated(0.29) benign(0.021) TCGA-FD-A5BX-01 14 23828168 23828168 C G EFS Missense_Mutation p.D390H 0.24 deleterious(0.01) probably_damaging(0.948) TCGA-FD-A5BX-01 14 23845129 23845129 G C IL25 3'UTR 0.20 TCGA-FD-A5BX-01 14 24035801 24035801 G T AP1G2 Missense_Mutation p.A100D 0.21 deleterious(0) possibly_damaging(0.876) TCGA-FD-A5BX-01 14 24584927 24584927 C G DCAF11 Missense_Mutation p.L42V 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A5BX-01 14 53529876 53529876 G C DDHD1 Missense_Mutation p.F517L 0.14 deleterious(0) probably_damaging(0.997) TCGA-FD-A5BX-01 14 62261731 62261731 G C SNAPC1 3'UTR 0.12 TCGA-FD-A5BX-01 14 62261756 62261756 G C SNAPC1 3'UTR 0.11 TCGA-FD-A5BX-01 14 68118155 68118155 C G VTI1B Missense_Mutation p.E216Q 0.24 deleterious(0) probably_damaging(0.95) TCGA-FD-A5BX-01 14 70989893 70989893 G C ADAM20 Missense_Mutation p.Q578E 0.26 tolerated(0.25) benign(0.01) TCGA-FD-A5BX-01 14 95912406 95912406 C T SYNE3 Missense_Mutation p.R491H 0.21 tolerated(0.19) benign(0.023) TCGA-FD-A5BX-01 15 22332464 22332464 C G RP11-69H14.6 RNA 0.21 TCGA-FD-A5BX-01 15 40241358 40241358 C T EIF2AK4 Silent p.L134L 0.25 TCGA-FD-A5BX-01 15 42143974 42143974 C T SPTBN5 Intron 0.21 TCGA-FD-A5BX-01 15 44180390 44180390 C T FRMD5 Silent p.E289E 0.28 TCGA-FD-A5BX-01 15 51772987 51772987 C G DMXL2 Missense_Mutation p.E2106Q 0.28 tolerated(0.17) benign(0.002) TCGA-FD-A5BX-01 15 55838477 55838477 G A PYGO1 Missense_Mutation p.S335L 0.27 tolerated(0.15) benign(0.004) TCGA-FD-A5BX-01 15 58256230 58256230 G C ALDH1A2 Missense_Mutation p.F313L 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-FD-A5BX-01 15 63092906 63092906 G A TLN2 Missense_Mutation p.E2139K 0.26 tolerated(0.06) benign(0.24) TCGA-FD-A5BX-01 15 65266963 65266963 G A SPG21 Silent p.F143F 0.33 TCGA-FD-A5BX-01 15 66821195 66821195 G A ZWILCH Silent p.L325L 0.31 TCGA-FD-A5BX-01 15 72495379 72495379 G C PKM Missense_Mutation p.L431V 0.16 tolerated(0.08) benign(0.254) TCGA-FD-A5BX-01 15 77471169 77471169 G A PEAK1 Missense_Mutation p.H1034Y 0.27 tolerated(0.33) benign(0.002) TCGA-FD-A5BX-01 15 77471280 77471280 G C PEAK1 Missense_Mutation p.Q997E 0.18 tolerated(0.71) benign(0.001) TCGA-FD-A5BX-01 15 77471636 77471636 G A PEAK1 Missense_Mutation p.S878F 0.23 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 15 77472113 77472113 G A PEAK1 Missense_Mutation p.S719L 0.22 deleterious(0.03) possibly_damaging(0.791) TCGA-FD-A5BX-01 15 77472557 77472557 G A PEAK1 Missense_Mutation p.T571I 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 15 82335694 82335694 G T MEX3B Missense_Mutation p.S506Y 0.23 deleterious(0.02) possibly_damaging(0.496) TCGA-FD-A5BX-01 15 85164843 85164843 C T ZSCAN2 Missense_Mutation p.P473S 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-FD-A5BX-01 15 85165007 85165007 G A ZSCAN2 Silent p.E527E 0.23 TCGA-FD-A5BX-01 15 85383866 85383866 C T ALPK3 Silent p.L654L 0.36 TCGA-FD-A5BX-01 16 11096993 11096993 G A CLEC16A Missense_Mutation p.M378I 0.43 tolerated(0.92) benign(0.001) TCGA-FD-A5BX-01 16 113018 113018 C G RHBDF1 Missense_Mutation p.E209Q 0.32 tolerated(0.15) probably_damaging(0.985) TCGA-FD-A5BX-01 16 23641139 23641139 G A PALB2 Missense_Mutation p.S779L 0.17 tolerated(0.27) benign(0.022) TCGA-FD-A5BX-01 16 23641235 23641235 G C PALB2 Missense_Mutation p.S747C 0.18 tolerated(0.17) benign(0.021) TCGA-FD-A5BX-01 16 23641272 23641272 G C PALB2 Missense_Mutation p.P735A 0.18 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BX-01 16 23641638 23641638 G A PALB2 Nonsense_Mutation p.Q613* 0.26 TCGA-FD-A5BX-01 16 23641730 23641730 G T PALB2 Missense_Mutation p.S582Y 0.19 deleterious(0.01) possibly_damaging(0.731) TCGA-FD-A5BX-01 16 2581075 2581075 C A CEMP1 5'UTR 0.25 TCGA-FD-A5BX-01 16 29918373 29918373 C T KCTD13 Silent p.E270E 0.16 TCGA-FD-A5BX-01 16 3024407 3024407 C T PKMYT1 Missense_Mutation p.E331K 0.35 deleterious(0) benign(0.435) TCGA-FD-A5BX-01 16 31004782 31004782 C T STX1B Silent p.T187T 0.15 TCGA-FD-A5BX-01 16 450460 450460 C G NME4 3'UTR 0.62 TCGA-FD-A5BX-01 16 4664715 4664715 C A UBALD1 Silent p.A28A 0.24 TCGA-FD-A5BX-01 16 4934788 4934788 C G PPL Missense_Mutation p.E1290Q 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-FD-A5BX-01 16 53326744 53326744 G C CHD9 Splice_Site p.X1764_splice 0.29 TCGA-FD-A5BX-01 16 54966719 54966719 G A IRX5 Missense_Mutation p.D187N 0.32 deleterious(0) probably_damaging(0.956) TCGA-FD-A5BX-01 16 54966809 54966809 G A IRX5 Missense_Mutation p.E217K 0.34 tolerated(0.11) benign(0.2) TCGA-FD-A5BX-01 16 56548567 56548567 C T BBS2 Missense_Mutation p.R48Q 0.25 deleterious(0.03) possibly_damaging(0.681) TCGA-FD-A5BX-01 16 71710366 71710366 G C PHLPP2 Silent p.L485L 0.29 TCGA-FD-A5BX-01 16 721202 721202 C T RHOT2 Silent p.L290L 0.28 TCGA-FD-A5BX-01 16 72821112 72821112 G T ZFHX3 Missense_Mutation p.P3688H 0.25 unknown(0) TCGA-FD-A5BX-01 16 75675551 75675551 C G KARS Missense_Mutation p.E73Q 0.36 tolerated(0.12) probably_damaging(0.999) TCGA-FD-A5BX-01 16 84088129 84088129 C T MBTPS1 Silent p.P1028P 0.28 TCGA-FD-A5BX-01 16 84778970 84778970 G A USP10 Missense_Mutation p.E295K 0.38 tolerated_low_confidence(0.21) benign(0.15) TCGA-FD-A5BX-01 17 11511499 11511499 G A DNAH9 Missense_Mutation p.M157I 0.22 benign(0.001) TCGA-FD-A5BX-01 17 16612182 16612182 C T CCDC144A Missense_Mutation p.H271Y 0.19 tolerated(1) benign(0.403) TCGA-FD-A5BX-01 17 17919559 17919559 G A ATPAF2 3'Flank 0.31 TCGA-FD-A5BX-01 17 18150540 18150540 C A FLII Missense_Mutation p.M873I 0.35 tolerated(0.82) benign(0.002) TCGA-FD-A5BX-01 17 18967239 18967239 C G SNORD3B-2 RNA 0.07 TCGA-FD-A5BX-01 17 18967288 18967288 C A SNORD3B-2 RNA 0.12 TCGA-FD-A5BX-01 17 21204284 21204284 C T MAP2K3 Silent p.F126F 0.18 TCGA-FD-A5BX-01 17 2594938 2594938 C T CLUH Silent p.L1237L 0.27 TCGA-FD-A5BX-01 17 27959822 27959822 C G SSH2 Missense_Mutation p.G770A 0.35 tolerated_low_confidence(0.39) benign(0.265) TCGA-FD-A5BX-01 17 33507596 33507596 G C UNC45B Missense_Mutation p.E760D 0.30 tolerated(0.07) possibly_damaging(0.728) TCGA-FD-A5BX-01 17 33904291 33904291 G C PEX12 Missense_Mutation p.S149C 0.38 deleterious(0.01) probably_damaging(0.937) TCGA-FD-A5BX-01 17 40766015 40766015 C T TUBG1 Missense_Mutation p.S281L 0.25 tolerated(0.34) benign(0.102) TCGA-FD-A5BX-01 17 45759796 45759796 G A KPNB1 3'UTR 0.17 TCGA-FD-A5BX-01 17 46622246 46622246 C T HOXB2 Missense_Mutation p.G10R 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 17 489507 489508 - A VPS53 Intron 0.12 TCGA-FD-A5BX-01 17 54969498 54969498 G C TRIM25 Missense_Mutation p.Q486E 0.38 tolerated(0.62) benign(0.12) TCGA-FD-A5BX-01 17 57762430 57762430 C T CLTC Missense_Mutation p.S1483L 0.24 deleterious(0.03) probably_damaging(0.941) TCGA-FD-A5BX-01 17 57955630 57955630 G A TUBD1 Silent p.L201L 0.16 TCGA-FD-A5BX-01 17 58270257 58270257 G C USP32 Missense_Mutation p.L1157V 0.24 deleterious(0) probably_damaging(0.928) TCGA-FD-A5BX-01 17 66250580 66250580 G A AMZ2 Missense_Mutation p.D208N 0.27 tolerated(0.24) benign(0.026) TCGA-FD-A5BX-01 17 66902287 66902287 C G ABCA8 Missense_Mutation p.D726H 0.36 deleterious(0.01) benign(0.112) TCGA-FD-A5BX-01 17 68171399 68171399 C A KCNJ2 Missense_Mutation p.F73L 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-FD-A5BX-01 17 73663474 73663474 C T SAP30BP Silent p.L8L 0.33 TCGA-FD-A5BX-01 17 76570876 76570876 G C DNAH17 Missense_Mutation p.N88K 0.22 benign(0.001) TCGA-FD-A5BX-01 17 78335677 78335677 G T RNF213 Nonsense_Mutation p.E3782* 0.22 TCGA-FD-A5BX-01 17 78399393 78399393 G T ENDOV Missense_Mutation p.R229S 0.36 deleterious(0) benign(0.101) TCGA-FD-A5BX-01 17 8415901 8415901 C A MYH10 Missense_Mutation p.M940I 0.30 benign(0.228) TCGA-FD-A5BX-01 17 959301 959301 G C ABR Missense_Mutation p.S512C 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BX-01 18 18546939 18546939 G A ROCK1 Silent p.L1097L 0.30 TCGA-FD-A5BX-01 18 55315746 55315746 C T ATP8B1 Missense_Mutation p.E1244K 0.22 tolerated(0.31) benign(0.033) TCGA-FD-A5BX-01 18 60646311 60646311 G T PHLPP1 Nonsense_Mutation p.E1601* 0.29 TCGA-FD-A5BX-01 18 672757 672757 G C ENOSF1 3'Flank 0.29 TCGA-FD-A5BX-01 19 10071088 10071088 C T COL5A3 Silent p.%3D 0.38 TCGA-FD-A5BX-01 19 10395089 10395089 G A ICAM1 Silent p.A312A 0.28 TCGA-FD-A5BX-01 19 1235034 1235034 C T C19orf26 Missense_Mutation p.E141K 0.29 deleterious(0.02) possibly_damaging(0.869) TCGA-FD-A5BX-01 19 13873643 13873643 G A CCDC130 Missense_Mutation p.E318K 0.47 tolerated_low_confidence(0.19) benign(0.006) TCGA-FD-A5BX-01 19 15839117 15839117 C G OR10H2 Silent p.T88T 0.22 TCGA-FD-A5BX-01 19 16652789 16652789 C G CHERP Missense_Mutation p.E31Q 0.38 deleterious(0) probably_damaging(0.982) TCGA-FD-A5BX-01 19 16653194 16653194 C T CHERP 5'UTR 0.31 TCGA-FD-A5BX-01 19 17476730 17476730 C T PLVAP Missense_Mutation p.D182N 0.28 tolerated(0.06) benign(0.393) TCGA-FD-A5BX-01 19 19765349 19765349 C T ATP13A1 Intron 0.21 TCGA-FD-A5BX-01 19 20727783 20727783 G A ZNF737 Missense_Mutation p.S409F 0.28 tolerated(0.17) unknown(0) TCGA-FD-A5BX-01 19 2290251 2290251 C T LINGO3 Missense_Mutation p.E509K 0.29 tolerated(0.85) benign(0.001) TCGA-FD-A5BX-01 19 35644870 35644870 G A FXYD7 3'UTR 0.21 TCGA-FD-A5BX-01 19 38951118 38951118 C G RYR1 Missense_Mutation p.L822V 0.29 benign(0.113) TCGA-FD-A5BX-01 19 38951129 38951129 C T RYR1 Silent p.I825I 0.29 TCGA-FD-A5BX-01 19 39195575 39195575 G C ACTN4 Missense_Mutation p.E133D 0.20 tolerated(0.11) probably_damaging(0.96) TCGA-FD-A5BX-01 19 40715101 40715101 C T MAP3K10 Silent p.I509I 0.24 TCGA-FD-A5BX-01 19 41512899 41512899 G C CYP2B6 Missense_Mutation p.D192H 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 19 42132106 42132106 C T CEACAM4 Missense_Mutation p.R98Q 0.27 tolerated(0.06) possibly_damaging(0.86) TCGA-FD-A5BX-01 19 44679701 44679701 G C ZNF226 Missense_Mutation p.E96Q 0.13 tolerated(0.08) possibly_damaging(0.707) TCGA-FD-A5BX-01 19 44933146 44933146 C T ZNF229 Missense_Mutation p.V604M 0.24 deleterious(0.04) benign(0.059) TCGA-FD-A5BX-01 19 51535195 51535195 C A KLK12 Missense_Mutation p.D132Y 0.32 tolerated(0.11) benign(0.156) TCGA-FD-A5BX-01 19 51914577 51914577 G C SIGLEC10 Missense_Mutation p.L624V 0.25 tolerated(0.23) benign(0.004) TCGA-FD-A5BX-01 19 54942066 54942066 C T TTYH1 Nonsense_Mutation p.Q339* 0.24 TCGA-FD-A5BX-01 19 54973102 54973102 C T LENG8 3'UTR 0.27 TCGA-FD-A5BX-01 19 5687578 5687578 C T HSD11B1L Silent p.F189F 0.18 TCGA-FD-A5BX-01 19 57325507 57325507 C T PEG3 Missense_Mutation p.E1435K 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A5BX-01 19 57647074 57647074 C G ZIM3 Missense_Mutation p.D211H 0.29 tolerated(0.06) benign(0.425) TCGA-FD-A5BX-01 19 57967690 57967690 C G VN1R1 Missense_Mutation p.Q55H 0.23 deleterious(0) probably_damaging(0.996) TCGA-FD-A5BX-01 19 59059491 59059491 G A TRIM28 Missense_Mutation p.A349T 0.26 tolerated(0.15) benign(0.113) TCGA-FD-A5BX-01 19 6387440 6387440 G A GTF2F1 Missense_Mutation p.R153C 0.21 deleterious(0) probably_damaging(0.995) TCGA-FD-A5BX-01 19 8467368 8467368 G A RAB11B Splice_Site p.X144_splice 0.34 TCGA-FD-A5BX-01 19 852912 852912 G C ELANE Missense_Mutation p.R35P 0.21 tolerated(0.53) benign(0.002) TCGA-FD-A5BX-01 1 101005449 101005449 C T GPR88 Silent p.F309F 0.22 TCGA-FD-A5BX-01 1 101704934 101704934 G A S1PR1 Missense_Mutation p.V132M 0.23 deleterious(0) probably_damaging(0.997) TCGA-FD-A5BX-01 1 104234148 104234148 G A AMY1B Silent p.G321G 0.35 TCGA-FD-A5BX-01 1 109812122 109812122 G T CELSR2 Missense_Mutation p.A2297S 0.23 tolerated(0.55) benign(0.01) TCGA-FD-A5BX-01 1 110172445 110172445 G T AMPD2 Silent p.L684L 0.29 TCGA-FD-A5BX-01 1 110709770 110709770 G T SLC6A17 Missense_Mutation p.Q73H 0.33 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BX-01 1 148594513 148594513 G A NBPF15 Missense_Mutation p.R629K 0.25 tolerated(0.31) benign(0.248) TCGA-FD-A5BX-01 1 150784428 150784428 G A ARNT 3'UTR 0.31 TCGA-FD-A5BX-01 1 151141532 151141532 G A SCNM1 Missense_Mutation p.E222K 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A5BX-01 1 152324296 152324296 G C FLG2 Nonsense_Mutation p.S1989* 0.30 TCGA-FD-A5BX-01 1 153391671 153391671 G C S100A7A Missense_Mutation p.K64N 0.19 deleterious(0.03) benign(0.354) TCGA-FD-A5BX-01 1 155210963 155210963 G C GBA 5'UTR 0.25 TCGA-FD-A5BX-01 1 155727056 155727056 G C GON4L Missense_Mutation p.S1771C 0.19 deleterious(0.03) possibly_damaging(0.843) TCGA-FD-A5BX-01 1 155927654 155927654 G A ARHGEF2 Missense_Mutation p.S522L 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 1 159410479 159410479 C T OR10J1 Silent p.L311L 0.32 TCGA-FD-A5BX-01 1 16459753 16459753 C T EPHA2 Missense_Mutation p.D659N 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 1 16460021 16460021 C A EPHA2 Nonsense_Mutation p.E607* 0.24 TCGA-FD-A5BX-01 1 16460034 16460034 C T EPHA2 Silent p.L602L 0.21 TCGA-FD-A5BX-01 1 165865490 165865490 C T UCK2 Silent p.F140F 0.32 TCGA-FD-A5BX-01 1 183087224 183087224 C G LAMC1 Missense_Mutation p.Q645E 0.17 deleterious(0.01) possibly_damaging(0.844) TCGA-FD-A5BX-01 1 19596083 19596083 G C AKR7L Intron 0.15 TCGA-FD-A5BX-01 1 200017851 200017851 C G NR5A2 Missense_Mutation p.L339V 0.25 tolerated(0.81) benign(0.38) TCGA-FD-A5BX-01 1 202850297 202850297 C T RABIF Missense_Mutation p.D61N 0.31 deleterious(0.02) benign(0.192) TCGA-FD-A5BX-01 1 207669536 207669536 C G CR1 5'Flank 0.41 TCGA-FD-A5BX-01 1 228474535 228474535 G C OBSCN Missense_Mutation p.L3542F 0.22 probably_damaging(0.994) TCGA-FD-A5BX-01 1 229738101 229738101 C T TAF5L Silent p.L271L 0.26 TCGA-FD-A5BX-01 1 236918478 236918478 C A ACTN2 Missense_Mutation p.H712N 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-FD-A5BX-01 1 26384977 26384977 G A TRIM63 Silent p.L245L 0.27 TCGA-FD-A5BX-01 1 26385055 26385055 G A TRIM63 Silent p.I219I 0.41 TCGA-FD-A5BX-01 1 27480786 27480786 G A SLC9A1 Missense_Mutation p.R14W 0.19 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-FD-A5BX-01 1 32498927 32498927 C G KHDRBS1 Missense_Mutation p.L255V 0.28 deleterious(0) probably_damaging(0.947) TCGA-FD-A5BX-01 1 33235534 33235534 G A KIAA1522 Missense_Mutation p.D252N 0.30 tolerated(0.17) unknown(0) TCGA-FD-A5BX-01 1 34383868 34383868 C A CSMD2 Missense_Mutation p.Q209H 0.18 tolerated(0.15) possibly_damaging(0.903) TCGA-FD-A5BX-01 1 35853094 35853094 G A ZMYM4 Missense_Mutation p.E718K 0.29 deleterious(0.01) possibly_damaging(0.595) TCGA-FD-A5BX-01 1 39854154 39854154 G T MACF1 Nonsense_Mutation p.E3152* 0.35 TCGA-FD-A5BX-01 1 43778256 43778256 G A TIE1 Silent p.V637V 0.36 TCGA-FD-A5BX-01 1 44128717 44128717 C G KDM4A Silent p.L194L 0.27 TCGA-FD-A5BX-01 1 45223597 45223597 C T KIF2C Silent p.L362L 0.30 TCGA-FD-A5BX-01 1 45223718 45223718 C T KIF2C Intron 0.31 TCGA-FD-A5BX-01 1 48713303 48713303 C G SLC5A9 3'UTR 0.64 TCGA-FD-A5BX-01 1 53459149 53459149 G C SCP2 Intron 0.22 TCGA-FD-A5BX-01 1 6505938 6505938 C G ESPN Missense_Mutation p.I469M 0.29 tolerated_low_confidence(0.05) probably_damaging(0.984) TCGA-FD-A5BX-01 1 67592905 67592905 C G C1orf141 Missense_Mutation p.E7Q 0.22 tolerated(0.3) benign(0.04) TCGA-FD-A5BX-01 1 9078298 9078298 G C SLC2A7 Missense_Mutation p.I191M 0.29 deleterious(0.01) probably_damaging(0.93) TCGA-FD-A5BX-01 1 92546048 92546048 C G BTBD8 5'UTR 0.21 TCGA-FD-A5BX-01 1 93998614 93998614 G C FNBP1L Missense_Mutation p.D259H 0.27 deleterious(0) probably_damaging(0.962) TCGA-FD-A5BX-01 1 9661438 9661438 G C TMEM201 Missense_Mutation p.Q294H 0.15 deleterious(0.03) benign(0.094) TCGA-FD-A5BX-01 20 10622201 10622201 G C JAG1 Silent p.L941L 0.26 TCGA-FD-A5BX-01 20 20243771 20243771 G A C20orf26 Missense_Mutation p.E834K 0.25 tolerated(0.09) possibly_damaging(0.7) TCGA-FD-A5BX-01 20 31292656 31292656 C G COMMD7 Silent p.L129L 0.20 TCGA-FD-A5BX-01 20 31643271 31643271 C G BPIFB3 Silent p.L14L 0.24 TCGA-FD-A5BX-01 20 32212724 32212724 C T CBFA2T2 Nonsense_Mutation p.Q292* 0.35 TCGA-FD-A5BX-01 20 34022151 34022151 G C GDF5 Missense_Mutation p.F354L 0.37 tolerated(0.75) benign(0.006) TCGA-FD-A5BX-01 20 34145283 34145283 C T ERGIC3 3'UTR 0.38 TCGA-FD-A5BX-01 20 37529305 37529305 C G PPP1R16B Missense_Mutation p.I183M 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A5BX-01 20 40116392 40116392 G A CHD6 Silent p.F638F 0.32 TCGA-FD-A5BX-01 20 44207958 44207958 C G WFDC8 5'UTR 0.23 TCGA-FD-A5BX-01 20 44442086 44442086 G A UBE2C Missense_Mutation p.E38K 0.29 deleterious(0.02) possibly_damaging(0.857) TCGA-FD-A5BX-01 20 44539852 44539852 C G PLTP Missense_Mutation p.E47Q 0.26 tolerated(0.11) possibly_damaging(0.474) TCGA-FD-A5BX-01 20 46264434 46264434 C T NCOA3 Missense_Mutation p.S494L 0.25 tolerated(0.05) benign(0.354) TCGA-FD-A5BX-01 20 46264448 46264448 C G NCOA3 Missense_Mutation p.P499A 0.26 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 20 48129668 48129668 G T PTGIS Silent p.L385L 0.21 TCGA-FD-A5BX-01 20 48129776 48129776 G C PTGIS Silent p.L349L 0.28 TCGA-FD-A5BX-01 20 57242588 57242588 G C STX16 Missense_Mutation p.D63H 0.18 deleterious(0) possibly_damaging(0.873) TCGA-FD-A5BX-01 20 60508081 60508081 G C CDH4 Missense_Mutation p.E760Q 0.32 tolerated(0.07) benign(0.351) TCGA-FD-A5BX-01 21 45949708 45949708 C T TSPEAR Missense_Mutation p.D255N 0.19 tolerated(0.08) benign(0.007) TCGA-FD-A5BX-01 21 47831124 47831124 G A PCNT Missense_Mutation p.E1713K 0.35 benign(0.011) TCGA-FD-A5BX-01 22 19839805 19839805 G A C22orf29 5'UTR 0.32 TCGA-FD-A5BX-01 22 19839807 19839807 G A C22orf29 5'UTR 0.32 TCGA-FD-A5BX-01 22 29693913 29693913 G C EWSR1 Missense_Mutation p.R469T 0.24 deleterious(0.01) unknown(0) TCGA-FD-A5BX-01 22 30782063 30782063 C T RNF215 Missense_Mutation p.R166Q 0.27 tolerated(0.05) possibly_damaging(0.575) TCGA-FD-A5BX-01 22 37407283 37407283 C G TST Missense_Mutation p.E227Q 0.32 deleterious(0.02) possibly_damaging(0.767) TCGA-FD-A5BX-01 22 50279822 50279822 G A ZBED4 Missense_Mutation p.E838K 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-FD-A5BX-01 2 103053812 103053812 G A IL18RAP Silent p.V240V 0.30 TCGA-FD-A5BX-01 2 139326581 139326581 C T SPOPL Silent p.A370A 0.21 TCGA-FD-A5BX-01 2 153519627 153519627 C T PRPF40A Missense_Mutation p.M716I 0.23 tolerated(0.22) benign(0.019) TCGA-FD-A5BX-01 2 15693566 15693566 G T NBAS Missense_Mutation p.Q107K 0.25 deleterious(0.02) possibly_damaging(0.633) TCGA-FD-A5BX-01 2 160806179 160806179 G A PLA2R1 Missense_Mutation p.R1217C 0.21 tolerated(0.17) probably_damaging(0.932) TCGA-FD-A5BX-01 2 169828485 169828485 C T ABCB11 Missense_Mutation p.E504K 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 2 171699142 171699142 G C GAD1 Intron 0.20 TCGA-FD-A5BX-01 2 179421681 179421681 C G TTN Missense_Mutation p.L29400F 0.40 TCGA-FD-A5BX-01 2 179476614 179476614 C T TTN Missense_Mutation p.D16808N 0.27 TCGA-FD-A5BX-01 2 187506201 187506201 C T ITGAV Silent p.L349L 0.30 TCGA-FD-A5BX-01 2 187506202 187506202 T A ITGAV Missense_Mutation p.L349Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 2 209200522 209200522 C T PIKFYVE Missense_Mutation p.S1421L 0.28 tolerated(0.43) benign(0.003) TCGA-FD-A5BX-01 2 215634032 215634032 T C BARD1 Missense_Mutation p.D440G 0.53 deleterious(0) probably_damaging(0.986) TCGA-FD-A5BX-01 2 220429983 220429983 G A OBSL1 Silent p.F796F 0.21 TCGA-FD-A5BX-01 2 223339376 223339376 C G SGPP2 Missense_Mutation p.I103M 0.18 deleterious(0) possibly_damaging(0.873) TCGA-FD-A5BX-01 2 237075028 237075028 C T GBX2 Silent p.P192P 0.27 TCGA-FD-A5BX-01 2 242814595 242814595 C T CXXC11 Silent p.L296L 0.23 TCGA-FD-A5BX-01 2 27601125 27601125 C T ZNF513 Missense_Mutation p.E305K 0.17 tolerated(0.72) benign(0.292) TCGA-FD-A5BX-01 2 29293657 29293657 C T C2orf71 Silent p.G1157G 0.25 TCGA-FD-A5BX-01 2 29294896 29294896 C G C2orf71 Silent p.L744L 0.28 TCGA-FD-A5BX-01 2 32289061 32289061 C G SPAST Missense_Mutation p.S54C 0.10 deleterious(0) probably_damaging(0.996) TCGA-FD-A5BX-01 2 54859802 54859802 G C SPTBN1 Missense_Mutation p.E1222Q 0.27 tolerated(0.36) possibly_damaging(0.864) TCGA-FD-A5BX-01 2 72360313 72360313 G C CYP26B1 Missense_Mutation p.H329D 0.30 tolerated(0.15) benign(0.143) TCGA-FD-A5BX-01 2 74041300 74041300 C G C2orf78 Missense_Mutation p.S265C 0.26 deleterious(0.01) probably_damaging(0.946) TCGA-FD-A5BX-01 2 75115036 75115036 G T HK2 Missense_Mutation p.E742D 0.26 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 2 75900572 75900572 C G GCFC2 Missense_Mutation p.K629N 0.38 deleterious(0) possibly_damaging(0.82) TCGA-FD-A5BX-01 2 85536624 85536624 G C TCF7L1 3'UTR 0.38 TCGA-FD-A5BX-01 2 98375509 98375509 G A TMEM131 Silent p.F1738F 0.33 TCGA-FD-A5BX-01 3 108216934 108216934 T C MYH15 Missense_Mutation p.T215A 0.04 deleterious(0.03) benign(0.021) TCGA-FD-A5BX-01 3 112710162 112710162 C T GTPBP8 Missense_Mutation p.P106S 0.32 deleterious(0.02) possibly_damaging(0.907) TCGA-FD-A5BX-01 3 113376961 113376961 C A KIAA2018 Nonsense_Mutation p.E1190* 0.19 TCGA-FD-A5BX-01 3 113378598 113378598 G A KIAA2018 Missense_Mutation p.S644L 0.30 benign(0.169) TCGA-FD-A5BX-01 3 12650782 12650782 C G RAF1 Missense_Mutation p.E125Q 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-FD-A5BX-01 3 128356737 128356737 G A RPN1 Nonsense_Mutation p.R180* 0.16 TCGA-FD-A5BX-01 3 130279175 130279175 C G COL6A6 5'Flank 0.32 TCGA-FD-A5BX-01 3 130279203 130279203 C T COL6A6 5'UTR 0.31 TCGA-FD-A5BX-01 3 133557043 133557043 C T RAB6B Silent p.E154E 0.33 TCGA-FD-A5BX-01 3 133557045 133557045 C T RAB6B Missense_Mutation p.E154K 0.33 deleterious(0) probably_damaging(0.936) TCGA-FD-A5BX-01 3 134079118 134079118 C G AMOTL2 Missense_Mutation p.Q571H 0.13 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BX-01 3 137787080 137787080 G A DZIP1L Missense_Mutation p.S582F 0.26 tolerated(0.13) benign(0.112) TCGA-FD-A5BX-01 3 14564571 14564571 C T GRIP2 RNA 0.16 TCGA-FD-A5BX-01 3 15073941 15073941 C T NR2C2 Missense_Mutation p.S408F 0.25 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 3 15073965 15073965 C G NR2C2 Nonsense_Mutation p.S416* 0.22 TCGA-FD-A5BX-01 3 157155332 157155332 C T PTX3 Missense_Mutation p.S54L 0.16 deleterious(0) benign(0.322) TCGA-FD-A5BX-01 3 167812963 167812963 C T GOLIM4 Silent p.Q37Q 0.21 TCGA-FD-A5BX-01 3 168834113 168834113 G C MECOM Nonsense_Mutation p.S393* 0.24 TCGA-FD-A5BX-01 3 169540564 169540564 C G LRRIQ4 Silent p.L285L 0.15 TCGA-FD-A5BX-01 3 178916810 178916810 C G PIK3CA Missense_Mutation p.S66C 0.25 deleterious(0.01) possibly_damaging(0.705) TCGA-FD-A5BX-01 3 178922324 178922324 G A PIK3CA Missense_Mutation p.E365K 0.26 deleterious(0.05) possibly_damaging(0.705) TCGA-FD-A5BX-01 3 183905743 183905743 G C ABCF3 Missense_Mutation p.E181Q 0.21 deleterious(0.02) possibly_damaging(0.701) TCGA-FD-A5BX-01 3 188242482 188242482 G A LPP Silent p.E112E 0.32 TCGA-FD-A5BX-01 3 190126160 190126160 C G CLDN16 Missense_Mutation p.S217C 0.24 deleterious(0) probably_damaging(0.95) TCGA-FD-A5BX-01 3 194390755 194390755 C T LSG1 Missense_Mutation p.G70E 0.26 deleterious(0) possibly_damaging(0.78) TCGA-FD-A5BX-01 3 194392810 194392810 G C LSG1 Missense_Mutation p.R28G 0.30 tolerated(0.07) benign(0.04) TCGA-FD-A5BX-01 3 194790350 194790350 C G XXYLT1 3'UTR 0.32 TCGA-FD-A5BX-01 3 195501046 195501046 G C MUC4 Silent p.L4358L 0.22 TCGA-FD-A5BX-01 3 195501094 195501094 G C MUC4 Missense_Mutation p.F4342L 0.20 possibly_damaging(0.483) TCGA-FD-A5BX-01 3 196054402 196054402 C G TM4SF19 Silent p.L20L 0.25 TCGA-FD-A5BX-01 3 20136888 20136888 C T KAT2B Silent p.F188F 0.27 TCGA-FD-A5BX-01 3 20215771 20215771 C G SGOL1 Missense_Mutation p.E418Q 0.15 tolerated(0.14) benign(0.06) TCGA-FD-A5BX-01 3 38595906 38595906 G C SCN5A Missense_Mutation p.I1559M 0.26 deleterious(0.04) probably_damaging(0.921) TCGA-FD-A5BX-01 3 39175793 39175793 G A TTC21A Missense_Mutation p.E953K 0.34 deleterious(0.01) benign(0.003) TCGA-FD-A5BX-01 3 44867555 44867555 G C KIF15 Missense_Mutation p.E858D 0.23 deleterious(0.01) benign(0.427) TCGA-FD-A5BX-01 3 46943273 46943273 C T PTH1R Silent p.F378F 0.32 TCGA-FD-A5BX-01 3 48461413 48461413 G A PLXNB1 Missense_Mutation p.P761L 0.34 tolerated(0.17) benign(0) TCGA-FD-A5BX-01 3 48461549 48461549 G A PLXNB1 Missense_Mutation p.P716S 0.29 deleterious(0.04) benign(0.004) TCGA-FD-A5BX-01 3 49743429 49743429 C T RNF123 Silent p.S773S 0.21 TCGA-FD-A5BX-01 3 49755899 49755899 C T AMIGO3 Missense_Mutation p.D334N 0.29 tolerated(1) benign(0.004) TCGA-FD-A5BX-01 3 49941018 49941018 G A MST1R Nonsense_Mutation p.Q9* 0.31 TCGA-FD-A5BX-01 3 51737905 51737905 C G TEX264 Missense_Mutation p.S272C 0.38 deleterious(0) probably_damaging(0.997) TCGA-FD-A5BX-01 3 51746773 51746773 G C GRM2 Missense_Mutation p.M245I 0.14 tolerated(0.1) benign(0.14) TCGA-FD-A5BX-01 3 52836817 52836817 G A ITIH3 Silent p.E568E 0.35 TCGA-FD-A5BX-01 3 58849499 58849499 C G C3orf67 Missense_Mutation p.E335Q 0.32 deleterious(0.02) benign(0.209) TCGA-FD-A5BX-01 3 63965588 63965588 C T ATXN7 Intron 0.30 TCGA-FD-A5BX-01 3 93783294 93783294 C T NSUN3 Missense_Mutation p.S9L 0.12 tolerated(0.25) benign(0.002) TCGA-FD-A5BX-01 4 100235052 100235052 G A ADH1B Nonsense_Mutation p.Q252* 0.26 TCGA-FD-A5BX-01 4 103747657 103747657 C T UBE2D3 Intron 0.32 TCGA-FD-A5BX-01 4 121737660 121737660 C G PRDM5 Missense_Mutation p.K271N 0.16 deleterious(0) probably_damaging(0.932) TCGA-FD-A5BX-01 4 146059592 146059592 G C OTUD4 Missense_Mutation p.Q714E 0.22 deleterious(0.01) possibly_damaging(0.624) TCGA-FD-A5BX-01 4 154524973 154524973 C T KIAA0922 Missense_Mutation p.L937F 0.17 deleterious(0.01) possibly_damaging(0.894) TCGA-FD-A5BX-01 4 156727579 156727579 G A GUCY1B3 3'UTR 0.35 TCGA-FD-A5BX-01 4 160262807 160262807 C G RAPGEF2 Missense_Mutation p.Q715E 0.25 deleterious(0) possibly_damaging(0.803) TCGA-FD-A5BX-01 4 183673033 183673033 G A TENM3 Missense_Mutation p.R1237K 0.25 tolerated(0.37) benign(0.011) TCGA-FD-A5BX-01 4 20552484 20552484 G A SLIT2 Missense_Mutation p.E842K 0.16 deleterious(0.02) benign(0.245) TCGA-FD-A5BX-01 4 24585973 24585973 G C DHX15 Missense_Mutation p.S15C 0.38 deleterious_low_confidence(0.01) benign(0.08) TCGA-FD-A5BX-01 4 2696740 2696740 G A FAM193A Missense_Mutation p.E763K 0.38 deleterious(0.03) probably_damaging(0.98) TCGA-FD-A5BX-01 4 3131758 3131758 C T HTT Silent p.F617F 0.21 TCGA-FD-A5BX-01 4 41946903 41946903 G A TMEM33 Missense_Mutation p.E164K 0.29 deleterious(0) probably_damaging(0.995) TCGA-FD-A5BX-01 4 56230312 56230312 G A SRD5A3 Missense_Mutation p.E146K 0.25 deleterious(0) probably_damaging(0.969) TCGA-FD-A5BX-01 4 66467514 66467514 G A EPHA5 Missense_Mutation p.S252F 0.32 tolerated(0.23) possibly_damaging(0.726) TCGA-FD-A5BX-01 4 83905480 83905480 G A LIN54 Missense_Mutation p.S173L 0.20 tolerated(0.31) benign(0.002) TCGA-FD-A5BX-01 4 89407344 89407344 G C HERC5 Missense_Mutation p.E606Q 0.21 deleterious(0.04) possibly_damaging(0.617) TCGA-FD-A5BX-01 4 95229825 95229825 A T HPGDS Missense_Mutation p.M99K 0.21 tolerated(0.27) benign(0.36) TCGA-FD-A5BX-01 5 112479015 112479015 C G MCC Missense_Mutation p.E262Q 0.16 tolerated(0.12) possibly_damaging(0.461) TCGA-FD-A5BX-01 5 131785348 131785348 G C C5orf56 Missense_Mutation p.E19Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-FD-A5BX-01 5 133451489 133451489 C T TCF7 Intron 0.38 TCGA-FD-A5BX-01 5 137519714 137519714 G A KIF20A Silent p.L424L 0.28 TCGA-FD-A5BX-01 5 139928948 139928948 C G EIF4EBP3 3'UTR 0.27 TCGA-FD-A5BX-01 5 140070850 140070850 G A HARS Nonsense_Mutation p.Q14* 0.15 TCGA-FD-A5BX-01 5 140242621 140242621 C G AC005609.1 Missense_Mutation p.D119H 0.41 tolerated_low_confidence(0.11) probably_damaging(0.934) TCGA-FD-A5BX-01 5 140503379 140503379 G A PCDHB4 Nonsense_Mutation p.W600* 0.21 TCGA-FD-A5BX-01 5 140517198 140517198 G A PCDHB5 Missense_Mutation p.E728K 0.21 deleterious_low_confidence(0.02) benign(0.087) TCGA-FD-A5BX-01 5 140573047 140573047 G C PCDHB10 Missense_Mutation p.D308H 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-FD-A5BX-01 5 156997912 156997912 C T ADAM19 Silent p.V57V 0.19 TCGA-FD-A5BX-01 5 158696038 158696038 C T UBLCP1 Missense_Mutation p.L39F 0.24 deleterious(0.03) probably_damaging(0.972) TCGA-FD-A5BX-01 5 160972281 160972281 C T GABRB2 Silent p.G63G 0.25 TCGA-FD-A5BX-01 5 21817178 21817178 G A CDH12 Missense_Mutation p.A293V 0.26 deleterious(0) probably_damaging(0.992) TCGA-FD-A5BX-01 5 23518025 23518025 C T PRDM9 Missense_Mutation p.R113C 0.25 deleterious_low_confidence(0) benign(0.066) TCGA-FD-A5BX-01 5 34812041 34812041 C G RAI14 Missense_Mutation p.Q246E 0.23 tolerated(0.06) probably_damaging(0.995) TCGA-FD-A5BX-01 5 41870449 41870449 G C OXCT1 Silent p.L4L 0.21 TCGA-FD-A5BX-01 5 5146314 5146314 C T ADAMTS16 Nonsense_Mutation p.Q83* 0.22 TCGA-FD-A5BX-01 5 55109582 55109582 C T DDX4 Missense_Mutation p.S566L 0.35 tolerated(0.08) possibly_damaging(0.507) TCGA-FD-A5BX-01 5 57751553 57751553 G A PLK2 Missense_Mutation p.R480W 0.19 deleterious(0) possibly_damaging(0.72) TCGA-FD-A5BX-01 5 59895041 59895041 G A DEPDC1B Missense_Mutation p.S430L 0.18 deleterious(0) benign(0.027) TCGA-FD-A5BX-01 5 64900773 64900773 G T TRIM23 Missense_Mutation p.Q382K 0.24 tolerated(0.26) benign(0.006) TCGA-FD-A5BX-01 5 72161422 72161422 G A TNPO1 Splice_Site p.X155_splice 0.17 TCGA-FD-A5BX-01 5 76332397 76332402 TAGCAA - AGGF1 In_Frame_Del p.L178_T180delinsS 0.18 TCGA-FD-A5BX-01 5 893162 893162 G A TRIP13 Missense_Mutation p.E17K 0.27 tolerated(0.3) benign(0.013) TCGA-FD-A5BX-01 5 89695298 89695298 C A CETN3 Missense_Mutation p.D113Y 0.24 deleterious(0) probably_damaging(0.965) TCGA-FD-A5BX-01 5 96136617 96136617 G C ERAP1 Nonsense_Mutation p.S204* 0.18 TCGA-FD-A5BX-01 6 106967276 106967276 G C AIM1 Missense_Mutation p.K323N 0.31 deleterious(0) probably_damaging(0.972) TCGA-FD-A5BX-01 6 108279136 108279136 G A SEC63 Silent p.I26I 0.25 TCGA-FD-A5BX-01 6 112493992 112493992 C T LAMA4 Missense_Mutation p.E458K 0.12 tolerated(0.3) probably_damaging(0.988) TCGA-FD-A5BX-01 6 21595094 21595094 G C SOX4 Missense_Mutation p.R110P 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 6 3113468 3113468 G A RIPK1 Missense_Mutation p.M637I 0.30 deleterious(0) probably_damaging(0.973) TCGA-FD-A5BX-01 6 31655465 31655465 G T ABHD16A Silent p.L500L 0.16 TCGA-FD-A5BX-01 6 31655472 31655472 G T ABHD16A Missense_Mutation p.S498Y 0.18 deleterious(0) possibly_damaging(0.726) TCGA-FD-A5BX-01 6 31655876 31655876 G C ABHD16A Missense_Mutation p.P438A 0.26 tolerated(0.09) benign(0.416) TCGA-FD-A5BX-01 6 31656058 31656058 G A ABHD16A Silent p.I425I 0.29 TCGA-FD-A5BX-01 6 31657895 31657895 G T ABHD16A Nonsense_Mutation p.S306* 0.29 TCGA-FD-A5BX-01 6 31658330 31658330 G A ABHD16A Missense_Mutation p.S298F 0.30 tolerated(0.74) possibly_damaging(0.5) TCGA-FD-A5BX-01 6 33405739 33405739 C G SYNGAP1 Missense_Mutation p.L353V 0.38 tolerated(1) benign(0.003) TCGA-FD-A5BX-01 6 33405756 33405756 C T SYNGAP1 Silent p.F358F 0.38 TCGA-FD-A5BX-01 6 34826003 34826003 C T UHRF1BP1 Missense_Mutation p.P624S 0.18 deleterious(0) benign(0.157) TCGA-FD-A5BX-01 6 36269737 36269737 G A PNPLA1 Missense_Mutation p.R292H 0.30 tolerated(0.77) benign(0.001) TCGA-FD-A5BX-01 6 42823610 42823610 G C GLTSCR1L Missense_Mutation p.G688A 0.23 tolerated(0.08) benign(0.167) TCGA-FD-A5BX-01 6 52701150 52701150 G A GSTA5 Silent p.F52F 0.16 TCGA-FD-A5BX-01 6 71233667 71233667 C T FAM135A Intron 0.18 TCGA-FD-A5BX-01 7 100349659 100349659 C T ZAN Missense_Mutation p.S644L 0.28 benign(0.02) TCGA-FD-A5BX-01 7 102960085 102960085 C T DNAJC2 Missense_Mutation p.E405K 0.21 deleterious(0.04) benign(0.169) TCGA-FD-A5BX-01 7 107847975 107847975 C A NRCAM Nonsense_Mutation p.E402* 0.33 TCGA-FD-A5BX-01 7 1132276 1132276 C T GPER1 Silent p.L304L 0.32 TCGA-FD-A5BX-01 7 127014801 127014801 C G ZNF800 Missense_Mutation p.E197Q 0.24 tolerated(0.52) benign(0.009) TCGA-FD-A5BX-01 7 127015047 127015047 C T ZNF800 Missense_Mutation p.D115N 0.42 deleterious(0.03) benign(0.003) TCGA-FD-A5BX-01 7 129691095 129691095 C T ZC3HC1 Missense_Mutation p.E38K 0.25 deleterious(0.03) benign(0.354) TCGA-FD-A5BX-01 7 142640639 142640639 G C KEL Missense_Mutation p.S546C 0.22 tolerated(0.06) possibly_damaging(0.895) TCGA-FD-A5BX-01 7 1480271 1480271 C G MICALL2 Missense_Mutation p.W587C 0.30 deleterious(0) probably_damaging(0.982) TCGA-FD-A5BX-01 7 148801215 148801215 G A ZNF425 Missense_Mutation p.A583V 0.22 tolerated(0.24) benign(0.002) TCGA-FD-A5BX-01 7 148895581 148895581 G A ZNF282 Missense_Mutation p.V108M 0.27 tolerated(0.15) probably_damaging(0.951) TCGA-FD-A5BX-01 7 148895586 148895586 G A ZNF282 Silent p.E109E 0.26 TCGA-FD-A5BX-01 7 148895662 148895662 G A ZNF282 Missense_Mutation p.D135N 0.19 deleterious(0.01) benign(0.297) TCGA-FD-A5BX-01 7 150555940 150555940 C G AOC1 Missense_Mutation p.L554V 0.17 tolerated(0.06) benign(0.203) TCGA-FD-A5BX-01 7 151845353 151845353 G A KMT2C Silent p.L4553L 0.30 TCGA-FD-A5BX-01 7 151878254 151878254 C G KMT2C Missense_Mutation p.E2231Q 0.19 probably_damaging(0.999) TCGA-FD-A5BX-01 7 157369412 157369412 C T PTPRN2 Silent p.L892L 0.36 TCGA-FD-A5BX-01 7 22532225 22532225 C T STEAP1B Missense_Mutation p.V241M 0.23 deleterious(0) probably_damaging(0.978) TCGA-FD-A5BX-01 7 35675001 35675001 G C HERPUD2 Missense_Mutation p.L229V 0.31 tolerated(0.55) benign(0.003) TCGA-FD-A5BX-01 7 56022676 56022676 C T MRPS17 Silent p.L66L 0.26 TCGA-FD-A5BX-01 7 6431634 6431634 G A RAC1 Missense_Mutation p.D63N 0.23 deleterious(0) probably_damaging(0.99) TCGA-FD-A5BX-01 7 72992910 72992910 G A TBL2 5'UTR 0.43 TCGA-FD-A5BX-01 7 76026974 76026974 G A SRCRB4D Silent p.F243F 0.26 TCGA-FD-A5BX-01 7 99103922 99103922 G A ZKSCAN5 Silent p.T85T 0.22 TCGA-FD-A5BX-01 7 99103931 99103931 G T ZKSCAN5 Missense_Mutation p.Q88H 0.23 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 7 99104064 99104064 G C ZKSCAN5 Missense_Mutation p.E133Q 0.24 deleterious(0.03) possibly_damaging(0.85) TCGA-FD-A5BX-01 7 99355845 99355845 G C CYP3A4 Missense_Mutation p.L475V 0.15 tolerated(0.06) benign(0.027) TCGA-FD-A5BX-01 7 99697298 99697298 C T MCM7 Missense_Mutation p.D64N 0.30 tolerated(0.29) benign(0.003) TCGA-FD-A5BX-01 8 103266530 103266530 C G UBR5 Nonstop_Mutation p.*2800Yext*42 0.12 TCGA-FD-A5BX-01 8 132052131 132052131 C T ADCY8 Missense_Mutation p.R150Q 0.73 deleterious(0.02) probably_damaging(0.953) TCGA-FD-A5BX-01 8 134034346 134034346 C T TG Silent p.I2329I 0.12 TCGA-FD-A5BX-01 8 144991766 144991766 C G PLEC Missense_Mutation p.E4212Q 0.10 probably_damaging(0.986) TCGA-FD-A5BX-01 8 38033830 38033830 A G LSM1 Silent p.Y3Y 0.16 TCGA-FD-A5BX-01 9 131469234 131469234 G T PKN3 Nonsense_Mutation p.E195* 0.57 TCGA-FD-A5BX-01 9 131469665 131469665 G A PKN3 Silent p.V272V 0.62 TCGA-FD-A5BX-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.52 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 9 138378017 138378017 G A PPP1R26 Missense_Mutation p.R554K 0.52 tolerated(0.62) benign(0.002) TCGA-FD-A5BX-01 9 138439746 138439746 G C OBP2A Missense_Mutation p.E103Q 0.42 deleterious(0.03) probably_damaging(0.945) TCGA-FD-A5BX-01 9 140331139 140331139 C T ENTPD8 Missense_Mutation p.G207E 0.38 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BX-01 9 32635568 32635568 C T TAF1L Missense_Mutation p.G4S 0.66 tolerated_low_confidence(0.46) benign(0.002) TCGA-FD-A5BX-01 9 34372277 34372277 C T KIAA1161 Missense_Mutation p.G188E 0.68 deleterious(0) probably_damaging(1) TCGA-FD-A5BX-01 9 36100521 36100521 C G RECK Missense_Mutation p.R427G 0.41 deleterious(0.05) benign(0.018) TCGA-FD-A5BX-01 X 119063990 119063990 C T NKAP Missense_Mutation p.M354I 0.55 deleterious(0.03) unknown(0) TCGA-FD-A5BX-01 X 123195159 123195159 T A STAG2 Nonsense_Mutation p.L501* 0.53 TCGA-FD-A5BX-01 X 18183063 18183063 G C BEND2 3'UTR 0.70 TCGA-FD-A5BX-01 X 27839490 27839490 G A MAGEB10 Missense_Mutation p.E23K 0.50 tolerated(0.16) benign(0.028) TCGA-FD-A5BX-01 X 35820609 35820609 C G MAGEB16 Nonsense_Mutation p.S99* 0.50 TCGA-FD-A5BX-01 X 44928966 44928966 C G KDM6A Nonsense_Mutation p.S689* 0.50 TCGA-FD-A5BX-01 X 46322680 46322680 G A KRBOX4 Missense_Mutation p.E64K 0.53 tolerated(0.08) possibly_damaging(0.579) TCGA-FD-A5BX-01 X 47006841 47006841 G A RBM10 5'UTR 0.52 TCGA-FD-A5BX-01 X 49958593 49958593 G T AKAP4 Missense_Mutation p.N257K 0.66 tolerated(0.09) benign(0.08) TCGA-FD-A5BX-01 X 53409191 53409191 C G SMC1A Missense_Mutation p.K1133N 0.60 deleterious(0) probably_damaging(1) TCGA-FD-A5BY-01 10 123842816 123842816 G A TACC2 Silent p.E267E 0.19 TCGA-FD-A5BY-01 10 37442566 37442566 G C ANKRD30A Missense_Mutation p.D536H 0.23 tolerated(0.07) benign(0.265) TCGA-FD-A5BY-01 10 48388416 48388416 G A RBP3 Missense_Mutation p.T821M 0.10 tolerated(0.08) probably_damaging(0.938) TCGA-FD-A5BY-01 11 17352548 17352548 A T NUCB2 Intron 0.41 TCGA-FD-A5BY-01 11 59814567 59814567 T C OOSP2 3'UTR 0.29 TCGA-FD-A5BY-01 12 306028 306028 C T SLC6A12 Missense_Mutation p.A366T 0.27 deleterious(0.01) probably_damaging(1) TCGA-FD-A5BY-01 12 3390945 3390945 G C TSPAN9 Missense_Mutation p.V204L 0.17 tolerated(0.93) benign(0.004) TCGA-FD-A5BY-01 12 46754960 46754960 C A SLC38A2 Silent p.V485V 0.43 TCGA-FD-A5BY-01 12 53647742 53647742 G A MFSD5 Missense_Mutation p.A482T 0.35 tolerated(0.14) benign(0.069) TCGA-FD-A5BY-01 14 20502372 20502372 G A OR4K13 Silent p.P182P 0.34 TCGA-FD-A5BY-01 15 23261774 23261774 C A GOLGA8I Missense_Mutation p.P296T 0.35 deleterious(0.02) benign(0.187) TCGA-FD-A5BY-01 15 63009828 63009828 G A TLN2 Silent p.Q939Q 0.56 TCGA-FD-A5BY-01 17 15516960 15516960 C T RP11-385D13.1 Missense_Mutation p.G633D 0.26 tolerated_low_confidence(0.19) benign(0.037) TCGA-FD-A5BY-01 17 29325726 29325726 G A RNF135 Silent p.L272L 0.35 TCGA-FD-A5BY-01 17 29325727 29325727 G A RNF135 Missense_Mutation p.E273K 0.35 tolerated(0.13) benign(0.032) TCGA-FD-A5BY-01 17 72738392 72738392 G T RAB37 Splice_Site p.X74_splice 0.32 TCGA-FD-A5BY-01 18 5416200 5416200 C G EPB41L3 Missense_Mutation p.G562R 0.26 tolerated(0.31) possibly_damaging(0.739) TCGA-FD-A5BY-01 19 23869927 23869927 G C ZNF675 5'UTR 0.22 TCGA-FD-A5BY-01 19 33135367 33135367 G C ANKRD27 Nonsense_Mutation p.S130* 0.26 TCGA-FD-A5BY-01 19 42187815 42187815 G T CEACAM7 Missense_Mutation p.L203I 0.05 tolerated(0.48) possibly_damaging(0.78) TCGA-FD-A5BY-01 19 49510321 49510321 C T RUVBL2 Silent p.A104A 0.17 TCGA-FD-A5BY-01 19 54722714 54722714 G A LILRB3 Intron 0.21 TCGA-FD-A5BY-01 1 110768679 110768679 G A KCNC4 Silent p.P566P 0.33 TCGA-FD-A5BY-01 1 152275409 152275409 C T FLG Missense_Mutation p.D3985N 0.32 unknown(0) TCGA-FD-A5BY-01 1 155290748 155290748 A G RUSC1 5'UTR 0.31 TCGA-FD-A5BY-01 1 169510997 169510997 C T F5 Missense_Mutation p.A1111T 0.38 tolerated_low_confidence(1) benign(0) TCGA-FD-A5BY-01 1 248737884 248737884 G A OR2T34 Missense_Mutation p.R59C 0.15 tolerated(0.07) benign(0.002) TCGA-FD-A5BY-01 1 25573472 25573472 G A C1orf63 5'UTR 0.38 TCGA-FD-A5BY-01 1 28920464 28920464 C T RAB42 Silent p.C51C 0.31 TCGA-FD-A5BY-01 1 39799728 39799729 GA - MACF1 Intron 0.31 TCGA-FD-A5BY-01 20 33874658 33874658 C T FAM83C Missense_Mutation p.G642S 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A5BY-01 20 42344681 42344681 G A MYBL2 Missense_Mutation p.G686D 0.33 tolerated(0.22) possibly_damaging(0.901) TCGA-FD-A5BY-01 21 44527640 44527640 T C U2AF1 5'UTR 0.43 TCGA-FD-A5BY-01 22 46611198 46611198 C T PPARA Missense_Mutation p.H113Y 0.58 deleterious(0) probably_damaging(1) TCGA-FD-A5BY-01 2 206165371 206165371 G A PARD3B Missense_Mutation p.R706Q 0.59 deleterious(0) possibly_damaging(0.718) TCGA-FD-A5BY-01 2 74652866 74652866 A C WDR54 3'UTR 0.41 TCGA-FD-A5BY-01 2 77746195 77746195 C T LRRTM4 Missense_Mutation p.G267E 0.35 tolerated(0.29) benign(0.026) TCGA-FD-A5BY-01 2 99907780 99907780 C T LYG1 Missense_Mutation p.V85M 0.34 deleterious(0.03) probably_damaging(0.98) TCGA-FD-A5BY-01 3 150127150 150127150 C T TSC22D2 Missense_Mutation p.P5S 0.09 deleterious(0) probably_damaging(0.921) TCGA-FD-A5BY-01 4 100803089 100803089 T C LAMTOR3 3'UTR 0.38 TCGA-FD-A5BY-01 4 119685991 119685991 G T SEC24D Missense_Mutation p.S421Y 0.45 deleterious(0) probably_damaging(0.997) TCGA-FD-A5BY-01 4 187005004 187005004 C G TLR3 Missense_Mutation p.L722V 0.22 tolerated(0.07) benign(0.399) TCGA-FD-A5BY-01 4 4458959 4458959 C G STX18 Missense_Mutation p.Q152H 0.58 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A5BY-01 4 77969538 77969538 C T CCNI Missense_Mutation p.R323H 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A5BY-01 5 124036909 124036909 G A ZNF608 Silent p.L320L 0.56 TCGA-FD-A5BY-01 5 129070763 129070763 G A ADAMTS19 Missense_Mutation p.E1145K 0.54 deleterious(0.02) possibly_damaging(0.519) TCGA-FD-A5BY-01 5 136315105 136315105 G T SPOCK1 Missense_Mutation p.H349N 0.13 tolerated(0.08) probably_damaging(0.997) TCGA-FD-A5BY-01 5 1403201 1403201 C T SLC6A3 Missense_Mutation p.V535M 0.26 tolerated(0.11) benign(0.409) TCGA-FD-A5BY-01 5 67591145 67591153 TACTTGATG - PIK3R1 Splice_Site p.X580_splice 0.58 TCGA-FD-A5BY-01 6 158485731 158485731 C A SYNJ2 Missense_Mutation p.H436Q 0.56 deleterious(0.04) benign(0.017) TCGA-FD-A5BY-01 6 49986689 49986689 G A DEFB110 3'UTR 0.39 TCGA-FD-A5BY-01 7 13949314 13949314 C G ETV1 Missense_Mutation p.E295Q 0.17 deleterious(0.01) possibly_damaging(0.51) TCGA-FD-A5BY-01 7 150647106 150647106 G C KCNH2 Intron 0.40 TCGA-FD-A5BY-01 7 55468945 55468945 C T LANCL2 Nonsense_Mutation p.Q253* 0.39 TCGA-FD-A5BY-01 7 70229862 70229862 A C AUTS2 Missense_Mutation p.T447P 0.16 tolerated(0.09) possibly_damaging(0.735) TCGA-FD-A5BY-01 8 120843964 120843964 G A TAF2 Nonsense_Mutation p.Q31* 0.47 TCGA-FD-A5BY-01 9 101984170 101984170 C T ALG2 Missense_Mutation p.E3K 0.35 tolerated_low_confidence(0.28) benign(0.001) TCGA-FD-A5BY-01 9 34655231 34655231 C T IL11RA Missense_Mutation p.S6L 0.30 deleterious(0.04) possibly_damaging(0.628) TCGA-FD-A5BY-01 9 77407659 77407659 C T TRPM6 Missense_Mutation p.D807N 0.33 tolerated(0.15) benign(0.008) TCGA-FD-A5BY-01 X 119211153 119211153 T A RHOXF2B Missense_Mutation p.L60F 0.43 tolerated(0.46) benign(0.368) TCGA-FD-A5BY-01 X 31676243 31676243 G A DMD Missense_Mutation p.R2631C 0.18 possibly_damaging(0.835) TCGA-FD-A5BY-01 X 43698114 43698114 C A MAOB Missense_Mutation p.K93N 0.23 tolerated(0.28) benign(0.003) TCGA-FD-A5BY-01 X 53279750 53279750 T C IQSEC2 Missense_Mutation p.T670A 0.22 tolerated(0.73) benign(0.11) TCGA-FD-A5BY-01 X 82764168 82764168 G A POU3F4 Missense_Mutation p.R279H 0.24 deleterious(0) probably_damaging(0.996) TCGA-FD-A5BZ-01 10 121207652 121207652 G A GRK5 Silent p.A428A 0.13 TCGA-FD-A5BZ-01 10 123258070 123258070 C T FGFR2 Missense_Mutation p.M538I 0.22 deleterious(0) probably_damaging(0.983) TCGA-FD-A5BZ-01 10 21101749 21101749 C G NEBL Missense_Mutation p.G823R 0.12 deleterious(0) probably_damaging(0.912) TCGA-FD-A5BZ-01 10 26500796 26500796 G C MYO3A Missense_Mutation p.E1585D 0.11 tolerated_low_confidence(0.48) benign(0.217) TCGA-FD-A5BZ-01 10 43600508 43600508 T C RET Missense_Mutation p.V245A 0.10 deleterious(0.02) benign(0.266) TCGA-FD-A5BZ-01 10 75283447 75283447 C T USP54 Silent p.A752A 0.28 TCGA-FD-A5BZ-01 11 107463146 107463146 C T AP000889.3 Missense_Mutation p.S115F 0.34 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-FD-A5BZ-01 11 110104203 110104203 G T RDX Missense_Mutation p.A449D 0.10 tolerated(0.12) probably_damaging(0.996) TCGA-FD-A5BZ-01 11 111896264 111896264 C A DLAT Missense_Mutation p.T23K 0.19 tolerated_low_confidence(0.05) benign(0.066) TCGA-FD-A5BZ-01 11 117787898 117787898 C T TMPRSS13 Silent p.S181S 0.18 TCGA-FD-A5BZ-01 11 134027937 134027937 T C NCAPD3 Missense_Mutation p.I1354V 0.04 deleterious(0.05) benign(0.272) TCGA-FD-A5BZ-01 11 55322409 55322409 C T OR4C15 Silent p.S209S 0.23 TCGA-FD-A5BZ-01 11 59406552 59406552 G A PATL1 Nonsense_Mutation p.Q754* 0.22 TCGA-FD-A5BZ-01 11 63962054 63962054 G C STIP1 Silent p.L155L 0.31 TCGA-FD-A5BZ-01 11 6643058 6643058 G A DCHS1 Silent p.S3283S 0.29 TCGA-FD-A5BZ-01 11 6655409 6655409 C A DCHS1 Silent p.R642R 0.21 TCGA-FD-A5BZ-01 11 67803985 67803985 G A NDUFS8 Silent p.E186E 0.17 TCGA-FD-A5BZ-01 11 92616249 92616249 C T FAT3 Silent p.F4209F 0.24 TCGA-FD-A5BZ-01 12 122750907 122750907 C T VPS33A Missense_Mutation p.E17K 0.22 deleterious(0.02) possibly_damaging(0.476) TCGA-FD-A5BZ-01 12 52715044 52715044 G A KRT83 Missense_Mutation p.R26W 0.32 deleterious(0) probably_damaging(0.972) TCGA-FD-A5BZ-01 12 53552184 53552184 T A CSAD 3'UTR 0.36 TCGA-FD-A5BZ-01 12 58197374 58197374 C T AVIL Missense_Mutation p.E584K 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A5BZ-01 12 8328510 8328510 G C ZNF705A Missense_Mutation p.R97T 0.26 tolerated(0.09) benign(0.001) TCGA-FD-A5BZ-01 12 96370376 96370376 C T HAL Missense_Mutation p.R588K 0.16 tolerated(1) benign(0.004) TCGA-FD-A5BZ-01 12 97339519 97339519 C T NEDD1 Missense_Mutation p.S575L 0.13 deleterious(0) probably_damaging(0.941) TCGA-FD-A5BZ-01 13 61986173 61986173 T C PCDH20 Missense_Mutation p.I687V 0.37 tolerated(0.06) possibly_damaging(0.557) TCGA-FD-A5BZ-01 14 105861077 105861077 T C PACS2 3'UTR 0.25 TCGA-FD-A5BZ-01 14 24620550 24620550 G A RNF31 Missense_Mutation p.E567K 0.32 tolerated(0.37) possibly_damaging(0.715) TCGA-FD-A5BZ-01 14 74426077 74426077 G T ENTPD5 3'Flank 0.17 TCGA-FD-A5BZ-01 15 34393975 34393975 C T EMC7 Silent p.Q22Q 0.14 TCGA-FD-A5BZ-01 15 44829339 44829339 C G EIF3J 5'UTR 0.14 TCGA-FD-A5BZ-01 15 52699592 52699592 A G MYO5A Silent p.N281N 0.14 TCGA-FD-A5BZ-01 16 22130322 22130322 G A VWA3A Missense_Mutation p.E364K 0.24 tolerated(0.41) benign(0.006) TCGA-FD-A5BZ-01 16 49672522 49672522 G A ZNF423 Missense_Mutation p.R181C 0.51 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BZ-01 16 66949261 66949261 C G CDH16 Missense_Mutation p.E149Q 0.42 deleterious(0.04) possibly_damaging(0.868) TCGA-FD-A5BZ-01 16 88872213 88872213 C A CDT1 Silent p.P256P 0.12 TCGA-FD-A5BZ-01 17 18154205 18154205 C G FLII Missense_Mutation p.E575Q 0.37 tolerated(0.38) benign(0.199) TCGA-FD-A5BZ-01 17 4796013 4796013 C G MINK1 Missense_Mutation p.S754C 0.23 deleterious(0.02) possibly_damaging(0.473) TCGA-FD-A5BZ-01 17 56770065 56770065 C A RAD51C Missense_Mutation p.P21T 0.28 deleterious(0.05) benign(0.027) TCGA-FD-A5BZ-01 17 61908904 61908904 G A PSMC5 Missense_Mutation p.M336I 0.21 tolerated(0.07) probably_damaging(0.99) TCGA-FD-A5BZ-01 17 6329194 6329194 C A AIPL1 Intron 0.44 TCGA-FD-A5BZ-01 17 65942319 65942319 G A BPTF Missense_Mutation p.E2499K 0.20 probably_damaging(0.979) TCGA-FD-A5BZ-01 17 7099849 7099849 T G DLG4 Missense_Mutation p.I420L 0.11 tolerated(0.15) benign(0.006) TCGA-FD-A5BZ-01 17 71166025 71166025 G A SSTR2 Silent p.G189G 0.09 TCGA-FD-A5BZ-01 17 72926794 72926794 G A OTOP2 Missense_Mutation p.R355Q 0.09 deleterious(0) probably_damaging(0.981) TCGA-FD-A5BZ-01 18 71740847 71740847 C A FBXO15 Missense_Mutation p.G461V 0.16 deleterious(0.05) probably_damaging(0.997) TCGA-FD-A5BZ-01 18 77246388 77246388 G C NFATC1 Missense_Mutation p.V732L 0.10 tolerated(0.07) benign(0.021) TCGA-FD-A5BZ-01 19 10220463 10220463 G C PPAN Intron 0.12 TCGA-FD-A5BZ-01 19 10221670 10221670 G A PPAN Silent p.R417R 0.11 TCGA-FD-A5BZ-01 19 10395175 10395175 C T ICAM1 Missense_Mutation p.T341M 0.23 tolerated(0.17) benign(0.239) TCGA-FD-A5BZ-01 19 18377615 18377615 G C KIAA1683 Missense_Mutation p.I245M 0.28 tolerated(0.22) benign(0.107) TCGA-FD-A5BZ-01 19 2408525 2408525 C T TMPRSS9 Silent p.F304F 0.30 TCGA-FD-A5BZ-01 19 38886205 38886205 G A SPRED3 Missense_Mutation p.R218H 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-FD-A5BZ-01 19 40392611 40392611 C T FCGBP Silent p.P2631P 0.09 TCGA-FD-A5BZ-01 19 41113416 41113416 C G LTBP4 Silent p.L446L 0.20 TCGA-FD-A5BZ-01 19 41884266 41884266 G A TMEM91 Missense_Mutation p.E18K 0.51 tolerated_low_confidence(0.1) benign(0.001) TCGA-FD-A5BZ-01 19 43371917 43371917 G A PSG1 3'UTR 0.24 TCGA-FD-A5BZ-01 19 44423762 44423762 A C ZNF45 Missense_Mutation p.D35E 0.10 tolerated(0.15) benign(0.01) TCGA-FD-A5BZ-01 19 4516678 4516678 G A PLIN4 Missense_Mutation p.P55L 0.32 tolerated(0.41) benign(0.004) TCGA-FD-A5BZ-01 19 4817244 4817244 G C TICAM1 Missense_Mutation p.F382L 0.38 tolerated(0.67) benign(0.013) TCGA-FD-A5BZ-01 19 4817573 4817573 G C TICAM1 Missense_Mutation p.P273A 0.39 tolerated(0.33) benign(0.023) TCGA-FD-A5BZ-01 19 4817755 4817755 G C TICAM1 Missense_Mutation p.S212C 0.33 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BZ-01 19 53994668 53994668 G T ZNF813 Missense_Mutation p.Q394H 0.09 tolerated(0.41) benign(0.01) TCGA-FD-A5BZ-01 19 5778493 5778493 G A CATSPERD Missense_Mutation p.G735R 0.23 deleterious(0.01) possibly_damaging(0.763) TCGA-FD-A5BZ-01 19 6534883 6534883 G A TNFSF9 Missense_Mutation p.E191K 0.27 tolerated(0.6) benign(0.101) TCGA-FD-A5BZ-01 1 1019691 1019691 G A C1orf159 Intron 0.24 TCGA-FD-A5BZ-01 1 109707118 109707118 C A KIAA1324 Intron 0.22 TCGA-FD-A5BZ-01 1 114162391 114162391 A C MAGI3 Silent p.P370P 0.21 TCGA-FD-A5BZ-01 1 1263209 1263209 G C GLTPD1 3'UTR 0.24 TCGA-FD-A5BZ-01 1 145562608 145562608 G T ANKRD35 Nonsense_Mutation p.E766* 0.35 TCGA-FD-A5BZ-01 1 160151813 160151813 C A ATP1A4 Nonsense_Mutation p.Y987* 0.28 TCGA-FD-A5BZ-01 1 167517352 167517352 G A CREG1 Missense_Mutation p.P121S 0.16 tolerated(0.2) possibly_damaging(0.47) TCGA-FD-A5BZ-01 1 183534894 183534894 G A NCF2 Silent p.S315S 0.25 TCGA-FD-A5BZ-01 1 201751889 201751889 C T NAV1 Missense_Mutation p.S750L 0.10 deleterious(0.02) benign(0.003) TCGA-FD-A5BZ-01 1 22839532 22839532 C T ZBTB40 Silent p.T859T 0.08 TCGA-FD-A5BZ-01 1 27120805 27120805 G A PIGV Missense_Mutation p.A94T 0.22 tolerated(0.87) benign(0.008) TCGA-FD-A5BZ-01 1 33647052 33647052 G C TRIM62 5'UTR 0.20 TCGA-FD-A5BZ-01 1 40961283 40961283 C G ZFP69 Missense_Mutation p.S378C 0.13 deleterious(0) probably_damaging(1) TCGA-FD-A5BZ-01 1 7798176 7798176 C T CAMTA1 Silent p.I1272I 0.21 TCGA-FD-A5BZ-01 20 24994690 24994690 G A ACSS1 Silent p.I453I 0.22 TCGA-FD-A5BZ-01 20 25290154 25290154 T G ABHD12 Missense_Mutation p.H226P 0.10 tolerated(0.18) possibly_damaging(0.771) TCGA-FD-A5BZ-01 20 307492 307492 C G SOX12 Missense_Mutation p.I308M 0.16 deleterious(0) unknown(0) TCGA-FD-A5BZ-01 20 32880237 32880237 G A AHCY Silent p.P124P 0.15 TCGA-FD-A5BZ-01 20 42788265 42788265 C T JPH2 Missense_Mutation p.A388T 0.27 tolerated(0.32) benign(0.098) TCGA-FD-A5BZ-01 20 43379298 43379298 G A KCNK15 Missense_Mutation p.S271N 0.20 tolerated(0.05) benign(0.01) TCGA-FD-A5BZ-01 20 43541300 43541300 G A PABPC1L Splice_Site p.X65_splice 0.06 TCGA-FD-A5BZ-01 20 61143549 61143549 C T C20orf166 5'Flank 0.19 TCGA-FD-A5BZ-01 21 27096877 27096877 G T ATP5J 3'UTR 0.33 TCGA-FD-A5BZ-01 21 38072071 38072071 G A SIM2 Missense_Mutation p.A9T 0.08 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BZ-01 22 31536233 31536233 G A PLA2G3 Silent p.A36A 0.12 TCGA-FD-A5BZ-01 22 45133115 45133115 G T PRR5 Missense_Mutation p.Q408H 0.27 deleterious_low_confidence(0.02) benign(0.365) TCGA-FD-A5BZ-01 2 127951414 127951414 C A CYP27C1 Missense_Mutation p.R250L 0.11 deleterious(0) possibly_damaging(0.882) TCGA-FD-A5BZ-01 2 145156270 145156270 T G ZEB2 Missense_Mutation p.K828N 0.16 tolerated(0.36) possibly_damaging(0.829) TCGA-FD-A5BZ-01 2 168102949 168102949 G A XIRP2 Missense_Mutation p.E1683K 0.17 probably_damaging(0.999) TCGA-FD-A5BZ-01 2 179463357 179463357 T G TTN Missense_Mutation p.K18996T 0.22 TCGA-FD-A5BZ-01 2 18765819 18765819 C T NT5C1B Silent p.S288S 0.18 TCGA-FD-A5BZ-01 2 197118738 197118738 C T HECW2 Silent p.E1145E 0.15 TCGA-FD-A5BZ-01 2 233390929 233390929 G A CHRND Missense_Mutation p.E2K 0.19 tolerated_low_confidence(0.25) benign(0.075) TCGA-FD-A5BZ-01 2 26596256 26596256 C G EPT1 Missense_Mutation p.A111G 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A5BZ-01 2 29045273 29045273 C T SPDYA Missense_Mutation p.A126V 0.20 deleterious(0.03) benign(0.35) TCGA-FD-A5BZ-01 2 32832677 32832677 A G BIRC6 Silent p.E4742E 0.18 TCGA-FD-A5BZ-01 2 33413826 33413826 A G LTBP1 Missense_Mutation p.T537A 0.09 tolerated(0.18) benign(0.003) TCGA-FD-A5BZ-01 2 45442 45442 C T FAM110C Missense_Mutation p.R315Q 0.26 tolerated_low_confidence(0.12) benign(0.012) TCGA-FD-A5BZ-01 2 49190754 49190754 G T FSHR Nonsense_Mutation p.C402* 0.33 TCGA-FD-A5BZ-01 2 65495906 65495906 C T ACTR2 3'UTR 0.37 TCGA-FD-A5BZ-01 2 74776595 74776595 G C LOXL3 Missense_Mutation p.S198W 0.49 deleterious(0.01) possibly_damaging(0.645) TCGA-FD-A5BZ-01 2 91843454 91843454 C A AC027612.6 RNA 0.21 TCGA-FD-A5BZ-01 3 123634164 123634164 T C CCDC14 Missense_Mutation p.D734G 0.19 deleterious(0) possibly_damaging(0.908) TCGA-FD-A5BZ-01 3 12393030 12393030 C G PPARG 5'UTR 0.50 TCGA-FD-A5BZ-01 3 134256013 134256013 C T CEP63 Missense_Mutation p.S153L 0.23 deleterious(0) probably_damaging(0.989) TCGA-FD-A5BZ-01 3 134323201 134323201 C A KY Missense_Mutation p.L402F 0.23 deleterious(0.04) possibly_damaging(0.664) TCGA-FD-A5BZ-01 3 138669110 138669110 C T C3orf72 Missense_Mutation p.P75L 0.33 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-FD-A5BZ-01 3 151090536 151090536 G A MED12L Silent p.L1247L 0.31 TCGA-FD-A5BZ-01 3 184075768 184075768 C T CLCN2 Silent p.G199G 0.30 TCGA-FD-A5BZ-01 3 184075861 184075861 C G CLCN2 Missense_Mutation p.K168N 0.36 deleterious(0) probably_damaging(1) TCGA-FD-A5BZ-01 3 186507765 186507765 T C RFC4 Missense_Mutation p.N362S 0.26 tolerated(0.13) benign(0.024) TCGA-FD-A5BZ-01 3 193031849 193031849 C G ATP13A5 Missense_Mutation p.E764D 0.14 tolerated(0.42) benign(0.12) TCGA-FD-A5BZ-01 3 195516420 195516420 C T MUC4 Silent p.S677S 0.26 TCGA-FD-A5BZ-01 3 196210763 196210763 C G RNF168 Splice_Site p.X187_splice 0.26 TCGA-FD-A5BZ-01 3 33249376 33249376 C G SUSD5 Missense_Mutation p.M111I 0.10 tolerated(0.18) benign(0.02) TCGA-FD-A5BZ-01 3 49394933 49394933 A G GPX1 Missense_Mutation p.F167S 0.09 deleterious(0) probably_damaging(0.98) TCGA-FD-A5BZ-01 3 49735549 49735549 C T RNF123 Silent p.I154I 0.35 TCGA-FD-A5BZ-01 3 49736208 49736208 C T RNF123 Silent p.I197I 0.36 TCGA-FD-A5BZ-01 3 50471831 50471831 C A CACNA2D2 Missense_Mutation p.E106D 0.33 tolerated(0.33) benign(0.029) TCGA-FD-A5BZ-01 3 51367625 51367625 C G DOCK3 Missense_Mutation p.D1153E 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-FD-A5BZ-01 3 62153735 62153735 C T PTPRG Missense_Mutation p.R311C 0.16 tolerated(0.05) possibly_damaging(0.505) TCGA-FD-A5BZ-01 4 100503108 100503108 C G MTTP Silent p.L36L 0.15 TCGA-FD-A5BZ-01 4 123249453 123249453 G A KIAA1109 Silent p.E3730E 0.21 TCGA-FD-A5BZ-01 4 134071764 134071764 C T PCDH10 Missense_Mutation p.R157C 0.10 deleterious(0) possibly_damaging(0.886) TCGA-FD-A5BZ-01 4 134071867 134071867 G C PCDH10 Missense_Mutation p.R191P 0.14 deleterious(0) probably_damaging(0.998) TCGA-FD-A5BZ-01 4 55987280 55987280 G C KDR Missense_Mutation p.L49V 0.31 deleterious(0.02) probably_damaging(0.931) TCGA-FD-A5BZ-01 4 5812788 5812788 G A EVC 3'UTR 0.56 TCGA-FD-A5BZ-01 4 68810291 68810291 G A TMPRSS11A Silent p.F66F 0.35 TCGA-FD-A5BZ-01 4 77660869 77660869 G C SHROOM3 Missense_Mutation p.D515H 0.27 deleterious(0) probably_damaging(0.991) TCGA-FD-A5BZ-01 4 79832928 79832928 C T BMP2K Missense_Mutation p.S1076F 0.31 deleterious_low_confidence(0) benign(0.184) TCGA-FD-A5BZ-01 5 137211532 137211532 C T MYOT Missense_Mutation p.S124L 0.18 tolerated(0.28) benign(0.002) TCGA-FD-A5BZ-01 5 140255135 140255135 G T PCDHA12 Silent p.V26V 0.18 TCGA-FD-A5BZ-01 5 140255136 140255136 G T PCDHA12 Missense_Mutation p.G27W 0.17 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FD-A5BZ-01 5 140769234 140769234 G C PCDHGB4 Missense_Mutation p.D595H 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A5BZ-01 5 149782802 149782802 G A CD74 Silent p.D233D 0.03 TCGA-FD-A5BZ-01 5 3599660 3599660 C A IRX1 Missense_Mutation p.Q200K 0.23 deleterious(0.02) benign(0.258) TCGA-FD-A5BZ-01 5 38338840 38338840 A G EGFLAM Missense_Mutation p.E83G 0.24 deleterious_low_confidence(0.04) benign(0.403) TCGA-FD-A5BZ-01 5 38876452 38876452 G C OSMR Missense_Mutation p.E75Q 0.37 tolerated(0.26) benign(0.115) TCGA-FD-A5BZ-01 5 666141 666141 C T TPPP Missense_Mutation p.V137I 0.19 tolerated(0.15) benign(0.009) TCGA-FD-A5BZ-01 6 15627647 15627647 G A DTNBP1 Silent p.L94L 0.18 TCGA-FD-A5BZ-01 6 2117711 2117711 A G GMDS Missense_Mutation p.I76T 0.38 tolerated_low_confidence(0.65) benign(0.002) TCGA-FD-A5BZ-01 6 26217258 26217258 C T HIST1H2AE Missense_Mutation p.S19F 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-FD-A5BZ-01 6 27782430 27782430 C T HIST1H2AJ Missense_Mutation p.R30Q 0.35 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-FD-A5BZ-01 6 29430506 29430506 C T OR2H1 3'UTR 0.40 TCGA-FD-A5BZ-01 6 43305512 43305512 G A ZNF318 Missense_Mutation p.S2075F 0.30 possibly_damaging(0.822) TCGA-FD-A5BZ-01 6 80732049 80732049 G C TTK Missense_Mutation p.E373Q 0.34 tolerated(0.43) benign(0.005) TCGA-FD-A5BZ-01 7 100678978 100678978 G A MUC17 Silent p.G1427G 0.13 TCGA-FD-A5BZ-01 7 100806828 100806828 C G VGF Missense_Mutation p.E433Q 0.18 tolerated_low_confidence(0.21) unknown(0) TCGA-FD-A5BZ-01 7 107258966 107258966 G A BCAP29 Silent p.L321L 0.25 TCGA-FD-A5BZ-01 7 14216379 14216380 - A DGKB Intron 0.36 TCGA-FD-A5BZ-01 7 147183135 147183135 T C CNTNAP2 Splice_Site p.X593_splice 0.14 TCGA-FD-A5BZ-01 7 150164244 150164244 C G GIMAP8 Missense_Mutation p.P153R 0.03 tolerated(0.33) benign(0.157) TCGA-FD-A5BZ-01 7 50468250 50468250 C T IKZF1 Silent p.C453C 0.24 TCGA-FD-A5BZ-01 7 81335683 81335683 C G HGF Missense_Mutation p.E559D 0.24 tolerated(0.38) possibly_damaging(0.6) TCGA-FD-A5BZ-01 8 117661114 117661114 C G EIF3H Missense_Mutation p.M253I 0.30 deleterious(0.02) benign(0.02) TCGA-FD-A5BZ-01 8 142446032 142446032 T C PTP4A3 3'Flank 0.10 TCGA-FD-A5BZ-01 8 142446033 142446033 G C PTP4A3 3'Flank 0.10 TCGA-FD-A5BZ-01 8 145625558 145625558 A G CPSF1 Splice_Site p.X313_splice 0.64 TCGA-FD-A5BZ-01 8 77763390 77763390 G A ZFHX4 Silent p.K1411K 0.20 TCGA-FD-A5BZ-01 9 117552903 117552903 G C TNFSF15 Silent p.L195L 0.37 TCGA-FD-A5BZ-01 9 117840333 117840333 C T TNC Missense_Mutation p.E855K 0.44 deleterious(0) possibly_damaging(0.544) TCGA-FD-A5BZ-01 9 131348125 131348125 G T SPTAN1 Nonsense_Mutation p.E887* 0.39 TCGA-FD-A5BZ-01 9 136597608 136597608 C G SARDH Missense_Mutation p.Q149H 0.37 deleterious(0.04) possibly_damaging(0.797) TCGA-FD-A5BZ-01 X 10534939 10534939 C T MID1 Missense_Mutation p.D217N 0.18 tolerated(0.07) benign(0.199) TCGA-FD-A5BZ-01 X 13792691 13792691 C T GPM6B Intron 0.08 TCGA-FD-A5BZ-01 X 1499970 1499970 C A IL3RA Silent p.I345I 0.13 TCGA-FD-A5BZ-01 X 18923972 18923972 C G PHKA2 Missense_Mutation p.E938Q 0.15 deleterious(0.04) probably_damaging(0.939) TCGA-FD-A5BZ-01 X 46951124 46951124 G A RGN Missense_Mutation p.D204N 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A5BZ-01 X 48761920 48761920 G A SLC35A2 Intron 0.19 TCGA-FD-A5BZ-01 X 53602723 53602723 C T HUWE1 Silent p.G1970G 0.26 TCGA-FD-A5BZ-01 X 67283838 67283838 C A OPHN1 Missense_Mutation p.K672N 0.10 tolerated(0.07) benign(0.042) TCGA-FD-A5C0-01 10 101997810 101997810 C T CWF19L1 Missense_Mutation p.R408K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A5C0-01 10 102247347 102247347 C T SEC31B 3'UTR 0.21 TCGA-FD-A5C0-01 10 119042820 119042820 T G PDZD8 Missense_Mutation p.S1142R 0.21 tolerated_low_confidence(0.18) benign(0.221) TCGA-FD-A5C0-01 10 135139539 135139539 C A CALY Missense_Mutation p.G149V 0.42 deleterious(0) probably_damaging(0.996) TCGA-FD-A5C0-01 10 28822493 28822493 C G WAC 5'UTR 0.10 TCGA-FD-A5C0-01 10 55569261 55569261 G A PCDH15 Missense_Mutation p.P451S 0.35 tolerated_low_confidence(0.11) unknown(0) TCGA-FD-A5C0-01 10 85992290 85992290 C T LRIT1 Missense_Mutation p.R422Q 0.20 tolerated(0.86) benign(0) TCGA-FD-A5C0-01 10 97917967 97917967 G A ZNF518A RNA 0.29 TCGA-FD-A5C0-01 11 104866565 104866565 T - CASP5 Frame_Shift_Del p.Q417Rfs*16 0.31 TCGA-FD-A5C0-01 11 3716787 3716787 T A NUP98 Silent p.S1353S 0.61 TCGA-FD-A5C0-01 11 47201080 47201080 T C PACSIN3 Missense_Mutation p.M221V 0.21 deleterious(0.01) possibly_damaging(0.791) TCGA-FD-A5C0-01 11 5799436 5799436 G A OR52N5 Silent p.T143T 0.77 TCGA-FD-A5C0-01 11 66029374 66029374 C T KLC2 Silent p.L130L 0.28 TCGA-FD-A5C0-01 11 67225948 67225948 G T CABP4 Missense_Mutation p.R253L 0.27 deleterious(0) possibly_damaging(0.566) TCGA-FD-A5C0-01 11 72423620 72423620 C T ARAP1 Intron 0.59 TCGA-FD-A5C0-01 12 10766151 10766151 G T MAGOHB 5'UTR 0.27 TCGA-FD-A5C0-01 12 112915503 112915503 T C PTPN11 Missense_Mutation p.V301A 0.21 deleterious(0.01) benign(0.002) TCGA-FD-A5C0-01 12 113704128 113704128 C T TPCN1 Silent p.A199A 0.20 TCGA-FD-A5C0-01 12 120270585 120270585 G A CIT Missense_Mutation p.S248L 0.18 deleterious(0.01) benign(0.039) TCGA-FD-A5C0-01 12 121176974 121176974 A G ACADS Missense_Mutation p.E354G 0.34 deleterious(0) probably_damaging(1) TCGA-FD-A5C0-01 12 12318022 12318022 G A LRP6 Nonsense_Mutation p.R585* 0.24 TCGA-FD-A5C0-01 12 133682915 133682915 A G ZNF140 Missense_Mutation p.H351R 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A5C0-01 12 21176199 21176199 G A SLCO1B7 Silent p.V188V 0.26 TCGA-FD-A5C0-01 12 49729943 49729943 G A C1QL4 Silent p.Y106Y 0.17 TCGA-FD-A5C0-01 12 52626989 52626989 G T KRT7 5'UTR 0.50 TCGA-FD-A5C0-01 12 52777487 52777487 G A KRT84 Silent p.F214F 0.24 TCGA-FD-A5C0-01 12 57397678 57397678 C T ZBTB39 Missense_Mutation p.A342T 0.42 tolerated(0.11) probably_damaging(0.992) TCGA-FD-A5C0-01 12 68595591 68595591 A G IL26 3'UTR 0.46 TCGA-FD-A5C0-01 12 8375110 8375110 C T FAM90A1 Missense_Mutation p.G235S 0.18 tolerated(0.41) possibly_damaging(0.856) TCGA-FD-A5C0-01 13 103718512 103718512 G C SLC10A2 Missense_Mutation p.L30V 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-FD-A5C0-01 13 25264609 25264609 G A ATP12A Missense_Mutation p.R227Q 0.46 deleterious(0.02) benign(0.147) TCGA-FD-A5C0-01 13 48953769 48953769 G T RB1 Nonsense_Mutation p.E458* 0.50 TCGA-FD-A5C0-01 14 57085377 57085377 A G TMEM260 Silent p.A374A 0.31 TCGA-FD-A5C0-01 14 73578313 73578313 G A RBM25 Missense_Mutation p.E699K 0.31 benign(0.292) TCGA-FD-A5C0-01 15 28202801 28202801 G A OCA2 Missense_Mutation p.R573C 0.28 tolerated(0.08) benign(0.002) TCGA-FD-A5C0-01 15 41099847 41099847 A G ZFYVE19 Silent p.R20R 0.22 TCGA-FD-A5C0-01 16 12059122 12059122 G A TNFRSF17 5'UTR 0.40 TCGA-FD-A5C0-01 16 24802802 24802802 A G TNRC6A Missense_Mutation p.N947D 0.45 tolerated(0.11) possibly_damaging(0.633) TCGA-FD-A5C0-01 16 66943235 66943235 C - CDH16 Frame_Shift_Del p.R776Pfs*2 0.48 TCGA-FD-A5C0-01 16 67197480 67197480 C T FBXL8 Silent p.F294F 0.81 TCGA-FD-A5C0-01 16 67328014 67328014 C G KCTD19 Missense_Mutation p.A551P 0.74 tolerated(0.26) benign(0.193) TCGA-FD-A5C0-01 16 67877191 67877191 C T THAP11 Missense_Mutation p.S245L 0.09 deleterious(0.01) possibly_damaging(0.689) TCGA-FD-A5C0-01 16 68264751 68264752 AG - ESRP2 Nonsense_Mutation p.Y630* 0.50 TCGA-FD-A5C0-01 16 72141432 72141432 G A DHX38 Missense_Mutation p.A932T 0.74 deleterious(0) probably_damaging(0.997) TCGA-FD-A5C0-01 16 88958761 88958761 G A CBFA2T3 Missense_Mutation p.A171V 0.19 deleterious(0.04) possibly_damaging(0.599) TCGA-FD-A5C0-01 17 27441071 27441071 A G MYO18A Silent p.D852D 0.36 TCGA-FD-A5C0-01 17 31322472 31322472 G A SPACA3 Missense_Mutation p.R27Q 0.18 tolerated_low_confidence(0.33) benign(0.009) TCGA-FD-A5C0-01 17 43037480 43037480 G A C1QL1 3'UTR 0.23 TCGA-FD-A5C0-01 17 68128523 68128523 C T KCNJ16 Missense_Mutation p.H99Y 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-FD-A5C0-01 17 68128978 68128978 G A KCNJ16 Silent p.P250P 0.25 TCGA-FD-A5C0-01 17 74386926 74386926 G T UBE2O 3'UTR 0.70 TCGA-FD-A5C0-01 18 14183662 14183662 A T ANKRD20A5P RNA 0.05 TCGA-FD-A5C0-01 18 29038474 29038474 C T DSG3 Missense_Mutation p.P95S 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A5C0-01 18 2928653 2928653 T C LPIN2 Missense_Mutation p.Y519C 0.23 deleterious(0) probably_damaging(0.999) TCGA-FD-A5C0-01 18 34376984 34376984 G C TPGS2 Silent p.T229T 0.22 TCGA-FD-A5C0-01 18 61390746 61390746 G A SERPINB11 3'UTR 0.22 TCGA-FD-A5C0-01 19 10163264 10163264 G A C3P1 RNA 0.17 TCGA-FD-A5C0-01 19 10432223 10432223 G A RAVER1 Silent p.L432L 0.22 TCGA-FD-A5C0-01 19 11536975 11536975 T C CCDC151 Missense_Mutation p.M318V 0.50 tolerated(0.37) benign(0.037) TCGA-FD-A5C0-01 19 12186674 12186675 - A ZNF844 Frame_Shift_Ins p.H247Qfs*8 0.27 TCGA-FD-A5C0-01 19 15284912 15284912 C T NOTCH3 Missense_Mutation p.R1568Q 0.21 deleterious(0.03) possibly_damaging(0.663) TCGA-FD-A5C0-01 19 18703042 18703042 G A C19orf60 3'UTR 0.23 TCGA-FD-A5C0-01 19 2185891 2185891 A G DOT1L Missense_Mutation p.M55V 0.24 deleterious(0.04) benign(0.411) TCGA-FD-A5C0-01 19 22271816 22271816 A G ZNF257 Missense_Mutation p.K422E 0.31 deleterious(0.03) probably_damaging(0.98) TCGA-FD-A5C0-01 19 41306707 41306707 G A EGLN2 Missense_Mutation p.R77Q 0.22 tolerated_low_confidence(0.24) benign(0.021) TCGA-FD-A5C0-01 19 42187803 42187803 T C CEACAM7 Missense_Mutation p.T207A 0.29 deleterious(0.01) probably_damaging(0.929) TCGA-FD-A5C0-01 19 52272427 52272427 G A FPR2 Silent p.G172G 0.29 TCGA-FD-A5C0-01 19 53792876 53792876 T C BIRC8 3'UTR 0.35 TCGA-FD-A5C0-01 19 53884325 53884325 G A ZNF525 Missense_Mutation p.E165K 0.22 deleterious(0.04) benign(0.167) TCGA-FD-A5C0-01 19 54666459 54666459 G C TMC4 Silent p.L489L 0.16 TCGA-FD-A5C0-01 19 55497551 55497551 G A NLRP2 Missense_Mutation p.R745Q 0.22 tolerated(0.37) benign(0.068) TCGA-FD-A5C0-01 19 57646981 57646981 G A ZIM3 Nonsense_Mutation p.Q242* 0.22 TCGA-FD-A5C0-01 19 57647158 57647158 G C ZIM3 Missense_Mutation p.Q183E 0.20 tolerated(0.09) benign(0.008) TCGA-FD-A5C0-01 1 153932653 153932653 G A SLC39A1 Missense_Mutation p.S299F 0.10 tolerated(0.06) possibly_damaging(0.748) TCGA-FD-A5C0-01 1 156020908 156020908 G A UBQLN4 Silent p.S157S 0.08 TCGA-FD-A5C0-01 1 156228953 156228953 G A SMG5 Missense_Mutation p.S762L 0.27 tolerated(0.08) benign(0.006) TCGA-FD-A5C0-01 1 156814395 156814396 AC - INSRR Frame_Shift_Del p.S866Pfs*25 0.25 TCGA-FD-A5C0-01 1 158450437 158450437 C T OR10R2 Missense_Mutation p.A257V 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-FD-A5C0-01 1 220440109 220440109 G A RAB3GAP2 Intron 0.15 TCGA-FD-A5C0-01 1 223568378 223568378 G A C1orf65 Missense_Mutation p.V521M 0.30 tolerated(0.27) possibly_damaging(0.862) TCGA-FD-A5C0-01 1 228525988 228525988 C T OBSCN Intron 0.33 TCGA-FD-A5C0-01 1 228559642 228559642 C T OBSCN Missense_Mutation p.P8012S 0.18 possibly_damaging(0.623) TCGA-FD-A5C0-01 1 245775210 245775210 G A KIF26B Missense_Mutation p.R677H 0.22 deleterious(0.05) unknown(0) TCGA-FD-A5C0-01 1 248525441 248525441 G A OR2T4 Missense_Mutation p.D187N 0.25 tolerated(0.07) possibly_damaging(0.651) TCGA-FD-A5C0-01 1 249212530 249212530 G T PGBD2 Missense_Mutation p.A583S 0.18 tolerated(0.06) possibly_damaging(0.718) TCGA-FD-A5C0-01 1 3670740 3670740 G A CCDC27 Missense_Mutation p.R126K 0.16 tolerated(1) benign(0) TCGA-FD-A5C0-01 1 983198 983198 G A AGRN Missense_Mutation p.R1225Q 0.41 tolerated(0.09) benign(0.094) TCGA-FD-A5C0-01 20 2818994 2818994 C T PCED1A Missense_Mutation p.R242H 0.53 deleterious(0.04) probably_damaging(0.993) TCGA-FD-A5C0-01 20 33575993 33576005 GCGGGAGGGCATC - MYH7B Frame_Shift_Del p.R548Tfs*96 0.29 TCGA-FD-A5C0-01 20 43378795 43378795 G A KCNK15 Silent p.T103T 0.27 TCGA-FD-A5C0-01 20 45630089 45630089 G A EYA2 Silent p.L44L 0.21 TCGA-FD-A5C0-01 20 57430330 57430330 C G GNAS Missense_Mutation p.D670E 0.25 tolerated(0.21) benign(0.241) TCGA-FD-A5C0-01 20 57766761 57766761 G A ZNF831 Silent p.R229R 0.45 TCGA-FD-A5C0-01 21 30339069 30339069 A G LTN1 Silent p.L628L 0.14 TCGA-FD-A5C0-01 21 34399267 34399267 G A OLIG2 Missense_Mutation p.A33T 0.37 tolerated(0.17) benign(0.06) TCGA-FD-A5C0-01 22 24491903 24491904 - GGCTCCAT CABIN1 Frame_Shift_Ins p.A1269Gfs*7 0.14 TCGA-FD-A5C0-01 22 41560068 41560068 G T EP300 Missense_Mutation p.C1247F 0.47 probably_damaging(0.999) TCGA-FD-A5C0-01 22 44285218 44285218 G - PNPLA5 Frame_Shift_Del p.S232Afs*4 0.15 TCGA-FD-A5C0-01 22 51064427 51064427 G T ARSA Silent p.A348A 0.19 TCGA-FD-A5C0-01 2 152420146 152420146 G T NEB Missense_Mutation p.L6223M 0.20 probably_damaging(0.972) TCGA-FD-A5C0-01 2 170072776 170072776 G C LRP2 Missense_Mutation p.T1938S 0.39 benign(0.007) TCGA-FD-A5C0-01 2 202014558 202014558 G A CFLAR Missense_Mutation p.E265K 0.42 deleterious(0.04) benign(0.082) TCGA-FD-A5C0-01 2 219603241 219603241 C - TTLL4 Frame_Shift_Del p.S282Vfs*29 0.36 TCGA-FD-A5C0-01 2 219619033 219619033 G T TTLL4 Missense_Mutation p.C1174F 0.60 tolerated_low_confidence(0.54) benign(0) TCGA-FD-A5C0-01 2 225669796 225669796 G T DOCK10 Missense_Mutation p.S1366Y 0.24 tolerated(0.11) benign(0.027) TCGA-FD-A5C0-01 2 26029163 26029163 T C ASXL2 Missense_Mutation p.N63D 0.33 deleterious(0) probably_damaging(0.971) TCGA-FD-A5C0-01 2 48898813 48898825 TGATAAGGTACTG - STON1-GTF2A1L Splice_Site p.X1146_splice 0.22 TCGA-FD-A5C0-01 2 99912095 99912095 C T LYG1 Silent p.L13L 0.26 TCGA-FD-A5C0-01 3 108724143 108724143 T A MORC1 Missense_Mutation p.K596I 0.30 deleterious(0) benign(0.408) TCGA-FD-A5C0-01 3 12545187 12545187 C T TSEN2 Silent p.L245L 0.21 TCGA-FD-A5C0-01 3 137483576 137483576 G A SOX14 5'Flank 0.11 TCGA-FD-A5C0-01 3 155199507 155199507 A G PLCH1 Silent p.H1444H 0.23 TCGA-FD-A5C0-01 3 156395838 156395838 G A TIPARP Missense_Mutation p.G118R 0.36 tolerated_low_confidence(0.57) benign(0.001) TCGA-FD-A5C0-01 3 164739119 164739119 G A SI Missense_Mutation p.P1051L 0.33 deleterious(0.04) possibly_damaging(0.881) TCGA-FD-A5C0-01 3 173996910 173996910 G A NLGN1 Missense_Mutation p.M373I 0.33 deleterious(0) possibly_damaging(0.864) TCGA-FD-A5C0-01 3 178937838 178937838 A G PIK3CA Silent p.L671L 0.32 TCGA-FD-A5C0-01 3 194365441 194365441 C T LSG1 Missense_Mutation p.R553K 0.16 tolerated(0.24) benign(0) TCGA-FD-A5C0-01 3 38163977 38163977 C T DLEC1 3'UTR 0.33 TCGA-FD-A5C0-01 3 38888526 38888526 G T SCN11A Missense_Mutation p.R1679S 0.14 deleterious(0) possibly_damaging(0.722) TCGA-FD-A5C0-01 3 39437967 39437967 A G SLC25A38 Missense_Mutation p.T291A 0.37 deleterious(0) probably_damaging(1) TCGA-FD-A5C0-01 3 47155453 47155453 C T SETD2 Missense_Mutation p.R1543Q 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-FD-A5C0-01 3 48602245 48602245 G - COL7A1 Frame_Shift_Del p.P2930Hfs*22 0.19 TCGA-FD-A5C0-01 3 49454850 49454850 C G AMT 3'UTR 0.30 TCGA-FD-A5C0-01 3 51968530 51968530 C T RRP9 Silent p.G406G 0.30 TCGA-FD-A5C0-01 4 1018310 1018310 C T FGFRL1 Silent p.D310D 0.35 TCGA-FD-A5C0-01 4 109753534 109753534 A G COL25A1 Splice_Site p.X570_splice 0.17 TCGA-FD-A5C0-01 4 126372619 126372619 T - FAT4 Frame_Shift_Del p.D3484Ifs*14 0.14 TCGA-FD-A5C0-01 4 141463727 141463727 G A ELMOD2 Splice_Site p.X178_splice 0.35 TCGA-FD-A5C0-01 4 155254513 155254513 C T DCHS2 Silent p.T450T 0.20 TCGA-FD-A5C0-01 4 155505608 155505608 A G FGA Missense_Mutation p.S757P 0.41 deleterious(0.01) probably_damaging(0.964) TCGA-FD-A5C0-01 4 164393315 164393315 G A TKTL2 Silent p.D524D 0.17 TCGA-FD-A5C0-01 4 174253031 174253031 T A HMGB2 3'UTR 0.24 TCGA-FD-A5C0-01 4 177248364 177248364 C T SPCS3 Missense_Mutation p.P116S 0.17 tolerated(0.47) benign(0.012) TCGA-FD-A5C0-01 4 189063602 189063602 C T TRIML1 Missense_Mutation p.S234F 0.10 deleterious(0.01) possibly_damaging(0.723) TCGA-FD-A5C0-01 4 74864255 74864255 G T CXCL5 Nonsense_Mutation p.S15* 0.19 TCGA-FD-A5C0-01 4 85701312 85701312 G C WDFY3 Silent p.V1438V 0.15 TCGA-FD-A5C0-01 5 13792275 13792275 A G DNAH5 Missense_Mutation p.V2759A 0.35 benign(0.418) TCGA-FD-A5C0-01 5 140553912 140553912 C A PCDHB7 Missense_Mutation p.P499H 0.55 deleterious_low_confidence(0) benign(0.027) TCGA-FD-A5C0-01 5 32069697 32069697 A G PDZD2 Missense_Mutation p.E825G 0.11 deleterious(0) possibly_damaging(0.642) TCGA-FD-A5C0-01 5 45262533 45262533 G A HCN1 Silent p.S721S 0.42 TCGA-FD-A5C0-01 5 82832829 82832829 G A VCAN Missense_Mutation p.R1336Q 0.48 tolerated(0.06) possibly_damaging(0.545) TCGA-FD-A5C0-01 5 96507007 96507007 C T RIOK2 Missense_Mutation p.D228N 0.15 deleterious(0) probably_damaging(0.998) TCGA-FD-A5C0-01 6 131486247 131486247 G A AKAP7 Silent p.Q106Q 0.30 TCGA-FD-A5C0-01 6 132198210 132198210 C T ENPP1 Missense_Mutation p.T601M 0.36 tolerated(0.25) benign(0.075) TCGA-FD-A5C0-01 6 155757608 155757608 C T NOX3 Missense_Mutation p.E248K 0.32 tolerated(0.42) benign(0.009) TCGA-FD-A5C0-01 6 2785457 2785457 C G WRNIP1 Missense_Mutation p.Q647E 0.20 deleterious(0) benign(0.241) TCGA-FD-A5C0-01 6 29943099 29943099 G A HCG9 RNA 0.42 TCGA-FD-A5C0-01 6 32012859 32012859 G T TNXB Missense_Mutation p.S46R 0.13 tolerated(0.06) probably_damaging(0.977) TCGA-FD-A5C0-01 6 36653525 36653525 C G CDKN1A Intron 0.39 TCGA-FD-A5C0-01 6 56917776 56917776 G T KIAA1586 Missense_Mutation p.G160V 0.46 deleterious(0.01) possibly_damaging(0.849) TCGA-FD-A5C0-01 6 80747683 80747683 G A TTK Splice_Site p.X684_splice 0.37 TCGA-FD-A5C0-01 7 127255074 127255074 C T PAX4 Missense_Mutation p.G66R 0.54 deleterious(0) probably_damaging(1) TCGA-FD-A5C0-01 7 20449544 20449544 G T ITGB8 Missense_Mutation p.R745L 0.23 deleterious(0) possibly_damaging(0.693) TCGA-FD-A5C0-01 7 26240328 26240328 G A HNRNPA2B1 5'UTR 0.29 TCGA-FD-A5C0-01 7 29105666 29105666 A G CPVL Silent p.S312S 0.48 TCGA-FD-A5C0-01 7 51261251 51261251 A T COBL Missense_Mutation p.L94H 0.20 deleterious(0.03) probably_damaging(1) TCGA-FD-A5C0-01 7 8110747 8110747 A G GLCCI1 Missense_Mutation p.Y388C 0.16 tolerated(0.13) probably_damaging(0.927) TCGA-FD-A5C0-01 7 92970781 92970781 G C CCDC132 Missense_Mutation p.E701Q 0.19 tolerated(0.46) benign(0.009) TCGA-FD-A5C0-01 7 99753296 99753296 C T C7orf43 Missense_Mutation p.E465K 0.30 deleterious(0.01) benign(0.343) TCGA-FD-A5C0-01 8 106813555 106813555 G C ZFPM2 Missense_Mutation p.L415F 0.61 tolerated(0.09) benign(0.445) TCGA-FD-A5C0-01 8 139165340 139165340 G T FAM135B Missense_Mutation p.L460I 0.48 tolerated(0.23) benign(0.004) TCGA-FD-A5C0-01 8 26365424 26365424 C T PNMA2 Missense_Mutation p.R283H 0.28 tolerated(0.26) benign(0.042) TCGA-FD-A5C0-01 9 113538208 113538208 G A MUSK Nonsense_Mutation p.W442* 0.24 TCGA-FD-A5C0-01 9 121973 121973 A T CBWD1 Missense_Mutation p.L357M 0.43 deleterious(0.05) possibly_damaging(0.706) TCGA-FD-A5C0-01 9 40715921 40715921 G A FAM74A3 RNA 0.43 TCGA-FD-A5C0-01 9 79635503 79635503 C A FOXB2 Missense_Mutation p.S311R 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.806) TCGA-FD-A5C0-01 9 89771787 89771787 G C C9orf170 3'UTR 0.29 TCGA-FD-A5C0-01 X 26213118 26213118 T A MAGEB6 Silent p.G385G 0.68 TCGA-FD-A5C0-01 X 44919402 44919402 G A KDM6A Splice_Site p.X443_splice 0.32 TCGA-FD-A5C1-01 10 112641147 112641147 C T PDCD4 Missense_Mutation p.S67L 0.23 tolerated(0.05) probably_damaging(0.997) TCGA-FD-A5C1-01 10 134886649 134886649 G A GPR123 Missense_Mutation p.R228Q 0.12 tolerated_low_confidence(0.41) benign(0.005) TCGA-FD-A5C1-01 10 61832745 61832745 C G ANK3 Missense_Mutation p.E2632Q 0.36 benign(0.026) TCGA-FD-A5C1-01 10 61926585 61926585 C A ANK3 Nonsense_Mutation p.E850* 0.10 TCGA-FD-A5C1-01 10 99237112 99237112 C T MMS19 Missense_Mutation p.R162Q 0.18 deleterious(0) probably_damaging(0.924) TCGA-FD-A5C1-01 11 10785051 10785053 GCT - CTR9 In_Frame_Del p.C309del 0.49 TCGA-FD-A5C1-01 11 117774463 117774463 G A TMPRSS13 Silent p.V528V 0.54 TCGA-FD-A5C1-01 11 119052808 119052808 C G NLRX1 Missense_Mutation p.S787C 0.30 tolerated(0.43) probably_damaging(0.983) TCGA-FD-A5C1-01 11 123909049 123909049 G A OR10G7 Silent p.I220I 0.11 TCGA-FD-A5C1-01 11 14913552 14913552 C G CYP2R1 Missense_Mutation p.R67T 0.08 tolerated(0.14) benign(0.146) TCGA-FD-A5C1-01 11 4870245 4870245 C T OR51S1 Missense_Mutation p.R65H 0.09 deleterious(0.03) probably_damaging(0.967) TCGA-FD-A5C1-01 11 5363973 5363973 C T OR51B5 Missense_Mutation p.R261H 0.05 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A5C1-01 11 55136337 55136337 G C OR4A15 Missense_Mutation p.M326I 0.08 tolerated_low_confidence(0.13) benign(0.018) TCGA-FD-A5C1-01 11 56310474 56310474 G C OR5M11 Missense_Mutation p.S87C 0.05 deleterious(0.01) possibly_damaging(0.886) TCGA-FD-A5C1-01 11 59623430 59623430 A G TCN1 Silent p.N283N 0.07 TCGA-FD-A5C1-01 11 61719346 61719346 G A BEST1 Intron 0.11 TCGA-FD-A5C1-01 11 62487579 62487579 C T HNRNPUL2 Missense_Mutation p.E566K 0.08 deleterious(0) possibly_damaging(0.579) TCGA-FD-A5C1-01 11 71726337 71726337 C G NUMA1 Missense_Mutation p.E738Q 0.35 benign(0.272) TCGA-FD-A5C1-01 11 86267649 86267649 G A ME3 Missense_Mutation p.T138M 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A5C1-01 12 110226307 110226307 G A TRPV4 Silent p.Y702Y 0.18 TCGA-FD-A5C1-01 12 52714839 52714839 G A KRT83 Missense_Mutation p.T94M 0.06 deleterious(0.03) benign(0.124) TCGA-FD-A5C1-01 12 52863491 52863491 C T KRT6C Missense_Mutation p.A463T 0.03 deleterious(0.03) possibly_damaging(0.572) TCGA-FD-A5C1-01 12 54059192 54059192 T C ATP5G2 Missense_Mutation p.Q168R 0.11 deleterious(0.01) possibly_damaging(0.813) TCGA-FD-A5C1-01 12 58009631 58009631 G T ARHGEF25 Silent p.L456L 0.19 TCGA-FD-A5C1-01 12 69140258 69140258 G C SLC35E3 Missense_Mutation p.W34S 0.04 deleterious(0.04) benign(0.019) TCGA-FD-A5C1-01 12 7079761 7079761 C G PHB2 5'UTR 0.10 TCGA-FD-A5C1-01 12 8376633 8376633 C G FAM90A1 Missense_Mutation p.G101A 0.11 tolerated(0.85) possibly_damaging(0.647) TCGA-FD-A5C1-01 12 88530520 88530520 C T CEP290 Missense_Mutation p.R114H 0.12 probably_damaging(0.999) TCGA-FD-A5C1-01 13 101712284 101712284 C G NALCN Silent p.L1597L 0.07 TCGA-FD-A5C1-01 13 103703661 103703661 G A SLC10A2 Missense_Mutation p.A236V 0.04 tolerated(0.41) benign(0.008) TCGA-FD-A5C1-01 13 115048391 115048391 G C UPF3A Missense_Mutation p.D132H 0.23 deleterious(0) probably_damaging(0.995) TCGA-FD-A5C1-01 13 31227428 31227428 T A USPL1 Missense_Mutation p.I461N 0.08 deleterious(0.04) benign(0.077) TCGA-FD-A5C1-01 13 46616381 46616381 C G ZC3H13 Missense_Mutation p.R86T 0.27 unknown(0) TCGA-FD-A5C1-01 13 53421108 53421108 G A PCDH8 Silent p.G488G 0.38 TCGA-FD-A5C1-01 14 100187618 100187618 C A CYP46A1 Nonsense_Mutation p.Y341* 0.17 TCGA-FD-A5C1-01 14 100826912 100826912 C T WARS Missense_Mutation p.R134K 0.12 deleterious(0.04) probably_damaging(0.924) TCGA-FD-A5C1-01 14 101432419 101432419 C G SNORD114-9 RNA 0.20 TCGA-FD-A5C1-01 14 20389374 20389374 T G OR4K5 Missense_Mutation p.S203R 0.13 deleterious(0) probably_damaging(0.993) TCGA-FD-A5C1-01 14 23944508 23944508 G C NGDN Missense_Mutation p.E91D 0.14 deleterious(0.05) probably_damaging(0.935) TCGA-FD-A5C1-01 14 24787621 24787621 C G ADCY4 3'UTR 0.17 TCGA-FD-A5C1-01 14 25075753 25075753 T C GZMH 3'UTR 0.20 TCGA-FD-A5C1-01 14 51475822 51475822 G A TRIM9 Nonsense_Mutation p.Q428* 0.06 TCGA-FD-A5C1-01 14 60749749 60749749 G A PPM1A Missense_Mutation p.E183K 0.06 tolerated(0.15) benign(0.079) TCGA-FD-A5C1-01 14 77493965 77493965 C T IRF2BPL Silent p.L57L 0.21 TCGA-FD-A5C1-01 15 25429527 25429527 T G SNORD115-8 RNA 0.07 TCGA-FD-A5C1-01 15 41280098 41280098 C G INO80 Missense_Mutation p.Q1215H 0.28 deleterious(0) probably_damaging(0.997) TCGA-FD-A5C1-01 15 42731931 42731931 C T ZNF106 Missense_Mutation p.E1259K 0.09 tolerated(0.16) benign(0.014) TCGA-FD-A5C1-01 15 51773227 51773227 C G DMXL2 Missense_Mutation p.E2026Q 0.07 tolerated(0.15) possibly_damaging(0.543) TCGA-FD-A5C1-01 15 60803789 60803789 C T RORA Silent p.Q185Q 0.25 TCGA-FD-A5C1-01 15 75656948 75656948 T C MAN2C1 Missense_Mutation p.M161V 0.10 tolerated(0.06) benign(0.049) TCGA-FD-A5C1-01 16 20748428 20748428 G C THUMPD1 Nonsense_Mutation p.S279* 0.08 TCGA-FD-A5C1-01 16 29912568 29912568 C G ASPHD1 Silent p.L92L 0.31 TCGA-FD-A5C1-01 16 29913072 29913072 C T ASPHD1 Silent p.C260C 0.28 TCGA-FD-A5C1-01 16 30977306 30977306 G A SETD1A Missense_Mutation p.A702T 0.11 benign(0.007) TCGA-FD-A5C1-01 16 46726394 46726394 G C ORC6 Missense_Mutation p.R99T 0.08 deleterious(0) possibly_damaging(0.548) TCGA-FD-A5C1-01 16 52473521 52473521 C A TOX3 Missense_Mutation p.Q449H 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A5C1-01 16 67861864 67861864 G A TSNAXIP1 Missense_Mutation p.V649M 0.37 tolerated(0.35) benign(0.007) TCGA-FD-A5C1-01 16 70551592 70551592 G A COG4 Silent p.I102I 0.10 TCGA-FD-A5C1-01 16 88601198 88601198 G A ZFPM1 Silent p.P944P 0.26 TCGA-FD-A5C1-01 17 28383109 28383109 T A EFCAB5 Missense_Mutation p.M767K 0.08 tolerated(0.31) benign(0.005) TCGA-FD-A5C1-01 17 37829377 37829377 G A PGAP3 Missense_Mutation p.P276S 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A5C1-01 17 41004283 41004283 C T AOC3 Missense_Mutation p.P308L 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-FD-A5C1-01 17 41585853 41585853 C T DHX8 Nonsense_Mutation p.R823* 0.12 TCGA-FD-A5C1-01 17 56400102 56400102 G T BZRAP1 Silent p.L410L 0.45 TCGA-FD-A5C1-01 17 71243509 71243509 G A C17orf80 3'UTR 0.37 TCGA-FD-A5C1-01 17 72920822 72920822 C T OTOP2 Missense_Mutation p.S32L 0.52 deleterious(0) probably_damaging(0.999) TCGA-FD-A5C1-01 17 76045934 76045934 G T TNRC6C Missense_Mutation p.G264V 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A5C1-01 17 7722374 7722374 C T DNAH2 Missense_Mutation p.A3603V 0.54 probably_damaging(0.982) TCGA-FD-A5C1-01 17 80015917 80015917 G C DUS1L 3'UTR 0.10 TCGA-FD-A5C1-01 18 18572886 18572886 G C ROCK1 Missense_Mutation p.S633C 0.11 tolerated(0.12) benign(0.008) TCGA-FD-A5C1-01 18 21148904 21148904 G A NPC1 Nonsense_Mutation p.R116* 0.21 TCGA-FD-A5C1-01 18 50866204 50866204 T C DCC Silent p.Y762Y 0.17 TCGA-FD-A5C1-01 18 63492068 63492068 G A CDH7 Splice_Site p.X327_splice 0.10 TCGA-FD-A5C1-01 19 11596503 11596503 T C ZNF653 Missense_Mutation p.N513S 0.10 deleterious(0) probably_damaging(0.951) TCGA-FD-A5C1-01 19 14521880 14521880 G A DDX39A Silent p.L178L 0.12 TCGA-FD-A5C1-01 19 18255988 18255988 C T MAST3 Silent p.I967I 0.03 TCGA-FD-A5C1-01 19 1828142 1828142 C T REXO1 Missense_Mutation p.V216I 0.06 tolerated(0.26) benign(0.003) TCGA-FD-A5C1-01 19 18368617 18368617 G A KIAA1683 Silent p.L1159L 0.15 TCGA-FD-A5C1-01 19 33078169 33078169 G A PDCD5 Missense_Mutation p.R114K 0.15 deleterious(0.03) possibly_damaging(0.459) TCGA-FD-A5C1-01 19 35793580 35793580 G A MAG Silent p.Q400Q 0.17 TCGA-FD-A5C1-01 19 40096007 40096007 C T LGALS13 Silent p.Y94Y 0.08 TCGA-FD-A5C1-01 19 49110466 49110466 C T SPACA4 Silent p.V77V 0.11 TCGA-FD-A5C1-01 19 49468715 49468715 G A FTL 5'UTR 0.22 TCGA-FD-A5C1-01 19 51874891 51874891 T G NKG7 3'UTR 0.18 TCGA-FD-A5C1-01 19 52719068 52719068 G C PPP2R1A Missense_Mutation p.D282H 0.12 tolerated(0.16) benign(0.006) TCGA-FD-A5C1-01 19 53625951 53625951 C G ZNF415 Intron 0.20 TCGA-FD-A5C1-01 19 56424294 56424294 C T NLRP13 Missense_Mutation p.E297K 0.11 deleterious(0) possibly_damaging(0.824) TCGA-FD-A5C1-01 19 571536 571536 G A BSG 5'Flank 0.16 TCGA-FD-A5C1-01 19 5787612 5787612 G A DUS3L Silent p.L400L 0.12 TCGA-FD-A5C1-01 19 58145263 58145263 G A ZNF211 Intron 0.11 TCGA-FD-A5C1-01 19 59074739 59074739 G A MZF1 Missense_Mutation p.A302V 0.12 tolerated(0.22) benign(0.001) TCGA-FD-A5C1-01 1 114440495 114440495 C T AP4B1 Silent p.L423L 0.08 TCGA-FD-A5C1-01 1 145109564 145109564 G A SEC22B RNA 0.11 TCGA-FD-A5C1-01 1 151825984 151825984 C T THEM5 Missense_Mutation p.E20K 0.49 tolerated(0.85) benign(0.005) TCGA-FD-A5C1-01 1 152280602 152280602 C G FLG Missense_Mutation p.E2254Q 0.39 benign(0.403) TCGA-FD-A5C1-01 1 152382107 152382107 C T CRNN Missense_Mutation p.R484K 0.37 tolerated(0.79) benign(0.003) TCGA-FD-A5C1-01 1 193029174 193029174 C A TROVE2 5'UTR 0.25 TCGA-FD-A5C1-01 1 201867505 201867505 G A LMOD1 Nonsense_Mutation p.Q600* 0.26 TCGA-FD-A5C1-01 1 203690370 203690370 A G ATP2B4 Missense_Mutation p.M882V 0.08 deleterious(0) probably_damaging(0.986) TCGA-FD-A5C1-01 1 216251674 216251674 G A USH2A Missense_Mutation p.R1777W 0.07 benign(0.013) TCGA-FD-A5C1-01 1 225700654 225700654 G C ENAH Missense_Mutation p.T428R 0.42 deleterious(0.01) possibly_damaging(0.521) TCGA-FD-A5C1-01 1 248039323 248039323 A G TRIM58 Silent p.T331T 0.08 TCGA-FD-A5C1-01 1 26349804 26349804 G A EXTL1 Missense_Mutation p.G223R 0.14 tolerated(0.84) benign(0.099) TCGA-FD-A5C1-01 1 27101054 27101054 C T ARID1A Nonsense_Mutation p.R1446* 0.13 TCGA-FD-A5C1-01 1 35824909 35824909 C G ZMYM4 Missense_Mutation p.L157V 0.16 tolerated_low_confidence(0.4) benign(0.004) TCGA-FD-A5C1-01 1 45501472 45501472 C G ZSWIM5 Missense_Mutation p.E727Q 0.17 tolerated(0.06) unknown(0) TCGA-FD-A5C1-01 1 50666599 50666599 T C ELAVL4 Missense_Mutation p.C301R 0.05 deleterious(0) probably_damaging(0.99) TCGA-FD-A5C1-01 1 55174709 55174709 G A MROH7 Silent p.E1230E 0.31 TCGA-FD-A5C1-01 1 84791393 84791393 G A SAMD13 Missense_Mutation p.V57M 0.21 deleterious(0.03) benign(0.185) TCGA-FD-A5C1-01 1 86174059 86174059 G T ZNHIT6 5'UTR 0.25 TCGA-FD-A5C1-01 20 23472347 23472347 C A CST8 Missense_Mutation p.P15T 0.06 tolerated(0.43) benign(0.01) TCGA-FD-A5C1-01 20 3893254 3893254 G C PANK2 Missense_Mutation p.G462A 0.15 deleterious(0) benign(0.149) TCGA-FD-A5C1-01 20 42789003 42789003 C T JPH2 Missense_Mutation p.G142R 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A5C1-01 20 44665921 44665921 G A SLC12A5 Missense_Mutation p.R193K 0.18 deleterious(0) probably_damaging(0.927) TCGA-FD-A5C1-01 21 43708318 43708318 C T ABCG1 Intron 0.21 TCGA-FD-A5C1-01 22 22049238 22049238 C T PPIL2 Missense_Mutation p.R449W 0.05 deleterious(0) possibly_damaging(0.871) TCGA-FD-A5C1-01 22 32352416 32352416 G T YWHAH Missense_Mutation p.M126I 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A5C1-01 22 42095597 42095597 G T MEI1 Nonsense_Mutation p.E19* 0.21 TCGA-FD-A5C1-01 22 51065114 51065114 C T ARSA Silent p.L253L 0.11 TCGA-FD-A5C1-01 2 149868144 149868144 G A KIF5C Missense_Mutation p.R943Q 0.10 deleterious(0.02) benign(0.14) TCGA-FD-A5C1-01 2 153006711 153006711 C A STAM2 Missense_Mutation p.D25Y 0.31 deleterious(0) probably_damaging(0.986) TCGA-FD-A5C1-01 2 17947918 17947918 G A GEN1 Missense_Mutation p.G200R 0.28 deleterious(0) probably_damaging(0.995) TCGA-FD-A5C1-01 2 190531852 190531852 T A ASNSD1 Missense_Mutation p.S332T 0.16 deleterious(0) probably_damaging(0.998) TCGA-FD-A5C1-01 2 204594492 204594492 C G CD28 Missense_Mutation p.F177L 0.08 tolerated(0.67) benign(0.001) TCGA-FD-A5C1-01 2 211523362 211523362 A G CPS1 Missense_Mutation p.I1242V 0.12 tolerated(1) probably_damaging(0.995) TCGA-FD-A5C1-01 2 220075470 220075470 G A ABCB6 Missense_Mutation p.T740I 0.23 deleterious(0) probably_damaging(0.998) TCGA-FD-A5C1-01 2 220356866 220356866 C T SPEG Silent p.D3165D 0.18 TCGA-FD-A5C1-01 2 234545740 234545740 C T UGT1A10 Missense_Mutation p.P191L 0.08 deleterious(0) probably_damaging(0.996) TCGA-FD-A5C1-01 2 239140912 239140912 G T AC016757.3 5'Flank 0.09 TCGA-FD-A5C1-01 2 37428949 37428949 C G CEBPZ Missense_Mutation p.K1041N 0.33 tolerated(0.11) unknown(0) TCGA-FD-A5C1-01 2 43937375 43937375 C T PLEKHH2 Missense_Mutation p.S707F 0.29 deleterious(0) benign(0.2) TCGA-FD-A5C1-01 3 100951716 100951716 G A IMPG2 Missense_Mutation p.R1048W 0.10 deleterious(0) benign(0.145) TCGA-FD-A5C1-01 3 121206402 121206402 C T POLQ Silent p.G1792G 0.28 TCGA-FD-A5C1-01 3 15297718 15297718 T G SH3BP5 Missense_Mutation p.K415Q 0.09 tolerated_low_confidence(0.12) benign(0.015) TCGA-FD-A5C1-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.14 tolerated(0.11) possibly_damaging(0.529) TCGA-FD-A5C1-01 3 190026020 190026020 C G CLDN1 3'UTR 0.15 TCGA-FD-A5C1-01 3 48725682 48725682 C T IP6K2 3'UTR 0.29 TCGA-FD-A5C1-01 3 49081856 49081856 G C QRICH1 Missense_Mutation p.L585V 0.15 deleterious(0.04) benign(0.1) TCGA-FD-A5C1-01 4 121737632 121737632 T C PRDM5 Missense_Mutation p.R281G 0.04 tolerated(0.22) benign(0.155) TCGA-FD-A5C1-01 4 155749202 155749202 C G RBM46 Missense_Mutation p.Q529E 0.17 tolerated_low_confidence(0.19) benign(0.001) TCGA-FD-A5C1-01 4 46979648 46979648 C A GABRA4 Splice_Site p.X92_splice 0.09 TCGA-FD-A5C1-01 4 89311972 89311972 C A HERC6 Nonsense_Mutation p.S202* 0.16 TCGA-FD-A5C1-01 5 132223557 132223557 C T AFF4 Missense_Mutation p.E972K 0.25 deleterious(0) benign(0.077) TCGA-FD-A5C1-01 5 132232793 132232793 C T AFF4 Missense_Mutation p.G510D 0.26 tolerated(0.38) benign(0.147) TCGA-FD-A5C1-01 5 140237785 140237785 G A PCDHA10 Missense_Mutation p.A718T 0.26 deleterious_low_confidence(0) possibly_damaging(0.78) TCGA-FD-A5C1-01 5 140742031 140742031 G A PCDHGB2 Missense_Mutation p.A777T 0.16 tolerated(0.38) benign(0.004) TCGA-FD-A5C1-01 5 145718705 145718705 C A POU4F3 Missense_Mutation p.F10L 0.17 deleterious_low_confidence(0.02) benign(0.191) TCGA-FD-A5C1-01 5 145718758 145718758 C T POU4F3 Missense_Mutation p.S28F 0.09 deleterious(0) benign(0.135) TCGA-FD-A5C1-01 5 149576666 149576666 C T SLC6A7 Silent p.I137I 0.13 TCGA-FD-A5C1-01 5 167993103 167993103 G C PANK3 Missense_Mutation p.P184A 0.32 deleterious(0) probably_damaging(0.996) TCGA-FD-A5C1-01 5 178581150 178581150 C T ADAMTS2 Missense_Mutation p.E428K 0.25 deleterious(0) possibly_damaging(0.795) TCGA-FD-A5C1-01 5 179227589 179227589 G A MGAT4B Missense_Mutation p.T220M 0.14 tolerated(0.09) possibly_damaging(0.671) TCGA-FD-A5C1-01 5 24509763 24509763 G C CDH10 Missense_Mutation p.L390V 0.25 tolerated(0.71) benign(0.301) TCGA-FD-A5C1-01 5 33989371 33989371 G T AMACR Missense_Mutation p.R326S 0.19 tolerated(0.38) benign(0.208) TCGA-FD-A5C1-01 5 66461257 66461257 G A MAST4 Missense_Mutation p.E2084K 0.13 benign(0.016) TCGA-FD-A5C1-01 5 79855322 79855322 C G ANKRD34B Missense_Mutation p.D173H 0.03 tolerated(0.08) benign(0.02) TCGA-FD-A5C1-01 6 170628021 170628021 A G FAM120B Missense_Mutation p.I515V 0.11 tolerated_low_confidence(0.68) benign(0.002) TCGA-FD-A5C1-01 6 17507399 17507399 G A CAP2 Splice_Site p.X101_splice 0.33 TCGA-FD-A5C1-01 6 28297176 28297176 G A ZSCAN31 Silent p.L95L 0.05 TCGA-FD-A5C1-01 6 29571453 29571453 G A GABBR1 Missense_Mutation p.S918F 0.17 deleterious(0.01) benign(0.276) TCGA-FD-A5C1-01 6 33283453 33283453 C G ZBTB22 Missense_Mutation p.R414P 0.21 tolerated(0.09) benign(0.011) TCGA-FD-A5C1-01 6 36652031 36652032 - TAA CDKN1A Nonsense_Mutation p.F51_D52ins* 0.36 TCGA-FD-A5C1-01 6 56470443 56470443 C T DST Intron 0.05 TCGA-FD-A5C1-01 6 56471280 56471280 C G DST Intron 0.12 TCGA-FD-A5C1-01 7 100681004 100681004 C G MUC17 Missense_Mutation p.L2103V 0.23 unknown(0) TCGA-FD-A5C1-01 7 102825913 102825913 G C DPY19L2P2 RNA 0.24 TCGA-FD-A5C1-01 7 123267238 123267238 T A ASB15 Missense_Mutation p.C258S 0.29 tolerated(0.43) benign(0.173) TCGA-FD-A5C1-01 7 137330273 137330273 C T DGKI Missense_Mutation p.R250H 0.12 tolerated(0.25) probably_damaging(0.998) TCGA-FD-A5C1-01 7 140221655 140221655 C G DENND2A Missense_Mutation p.G971R 0.22 deleterious(0) probably_damaging(1) TCGA-FD-A5C1-01 7 143175678 143175678 C A TAS2R41 Missense_Mutation p.S238Y 0.10 deleterious(0) probably_damaging(0.987) TCGA-FD-A5C1-01 7 143882595 143882595 G A CTAGE4 Missense_Mutation p.D667N 0.16 tolerated(0.07) possibly_damaging(0.735) TCGA-FD-A5C1-01 7 30793522 30793522 G A INMT Silent p.A110A 0.07 TCGA-FD-A5C1-01 7 47869716 47869716 G C PKD1L1 Silent p.G2160G 0.19 TCGA-FD-A5C1-01 7 57188240 57188240 C A ZNF479 Missense_Mutation p.E294D 0.31 tolerated(0.06) benign(0.253) TCGA-FD-A5C1-01 7 73083872 73083872 G C VPS37D Missense_Mutation p.E88Q 0.50 deleterious(0) probably_damaging(0.982) TCGA-FD-A5C1-01 7 81336624 81336624 C A HGF Missense_Mutation p.R533L 0.26 deleterious(0.01) benign(0.243) TCGA-FD-A5C1-01 7 93072985 93072985 G A CALCR Missense_Mutation p.H279Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-FD-A5C1-01 7 98565208 98565208 G A TRRAP Missense_Mutation p.E2460K 0.21 benign(0.029) TCGA-FD-A5C1-01 8 10755628 10755628 A G XKR6 Missense_Mutation p.I587T 0.10 deleterious(0) possibly_damaging(0.905) TCGA-FD-A5C1-01 8 145512959 145512959 G C BOP1 Silent p.L42L 0.33 TCGA-FD-A5C1-01 8 145753433 145753433 C T C8orf82 Missense_Mutation p.M60I 0.11 tolerated(0.36) benign(0.158) TCGA-FD-A5C1-01 8 1649571 1649571 G A DLGAP2 Silent p.%3D 0.24 TCGA-FD-A5C1-01 9 5361770 5361770 G C PLGRKT Missense_Mutation p.S67C 0.33 deleterious(0.02) possibly_damaging(0.729) TCGA-FD-A5C1-01 X 100910852 100910852 C G ARMCX2 Missense_Mutation p.E575Q 0.29 tolerated(0.15) probably_damaging(1) TCGA-FD-A5C1-01 X 133675445 133675445 A G MIR542 RNA 0.13 TCGA-FD-A5C1-01 X 153179046 153179046 C G ARHGAP4 Missense_Mutation p.K421N 0.26 deleterious(0) probably_damaging(0.99) TCGA-FD-A5C1-01 X 153248182 153248182 C A TMEM187 Silent p.L223L 0.07 TCGA-FD-A5C1-01 X 1571710 1571710 C T ASMTL Silent p.G8G 0.18 TCGA-FD-A5C1-01 X 39923135 39923135 C G BCOR Silent p.L1191L 0.06 TCGA-FD-A5C1-01 X 57619113 57619113 C T ZXDB Missense_Mutation p.P211L 0.12 tolerated(0.06) benign(0.124) TCGA-FD-A5C1-01 X 5821764 5821764 G A NLGN4X Missense_Mutation p.R319W 0.05 deleterious(0) probably_damaging(0.923) TCGA-FD-A62N-01 10 108339126 108339126 C A SORCS1 Splice_Site p.X1124_splice 0.08 TCGA-FD-A62N-01 10 128936040 128936040 G A FAM196A 3'UTR 0.16 TCGA-FD-A62N-01 10 20506403 20506403 C T PLXDC2 Nonsense_Mutation p.R391* 0.16 TCGA-FD-A62N-01 10 26463334 26463334 A G MYO3A Missense_Mutation p.T1381A 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-FD-A62N-01 10 75255498 75255498 C G PPP3CB Intron 0.25 TCGA-FD-A62N-01 10 7683937 7683937 C T ITIH5 Silent p.E84E 0.11 TCGA-FD-A62N-01 11 110104162 110104162 A C RDX Missense_Mutation p.L463V 0.13 tolerated(0.12) probably_damaging(0.975) TCGA-FD-A62N-01 11 55340183 55340183 A T OR4C16 Missense_Mutation p.N194Y 0.12 deleterious(0) probably_damaging(0.994) TCGA-FD-A62N-01 11 57100285 57100285 G - SSRP1 Frame_Shift_Del p.T195Rfs*14 0.15 TCGA-FD-A62N-01 11 58391852 58391852 A G CNTF Missense_Mutation p.K154E 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A62N-01 11 62519747 62519747 C T ZBTB3 Missense_Mutation p.D514N 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A62N-01 11 62529083 62529083 G T POLR2G 5'UTR 0.20 TCGA-FD-A62N-01 11 63057980 63057980 C - SLC22A10 Frame_Shift_Del p.C116Vfs*17 0.21 TCGA-FD-A62N-01 11 65385099 65385099 C T PCNXL3 Missense_Mutation p.R167W 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-FD-A62N-01 11 71946371 71946371 C T INPPL1 Silent p.I845I 0.11 TCGA-FD-A62N-01 12 121758210 121758210 G A ANAPC5 Missense_Mutation p.P498L 0.12 deleterious(0) possibly_damaging(0.73) TCGA-FD-A62N-01 12 42854137 42854137 C T PRICKLE1 Missense_Mutation p.R657Q 0.14 tolerated(0.25) benign(0.134) TCGA-FD-A62N-01 12 54857082 54857082 C T GTSF1 Splice_Site p.X40_splice 0.17 TCGA-FD-A62N-01 12 57440353 57440353 G T MYO1A Missense_Mutation p.A208E 0.09 deleterious(0) probably_damaging(0.987) TCGA-FD-A62N-01 12 6128148 6128148 C T VWF Missense_Mutation p.G1479D 0.11 tolerated(0.26) benign(0.008) TCGA-FD-A62N-01 12 70726621 70726621 G C CNOT2 Missense_Mutation p.G215A 0.07 tolerated(0.1) benign(0.138) TCGA-FD-A62N-01 12 82796885 82796885 G A METTL25 Missense_Mutation p.E419K 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A62N-01 13 49027248 49027248 G T RB1 Splice_Site p.X605_splice 0.23 TCGA-FD-A62N-01 14 20666304 20666304 T A OR11G2 Silent p.A270A 0.12 TCGA-FD-A62N-01 14 28734034 28734034 G T BNIP3P1 RNA 0.08 TCGA-FD-A62N-01 14 65197404 65197404 C T PLEKHG3 Silent p.P132P 0.14 TCGA-FD-A62N-01 15 49431799 49431799 G A COPS2 Missense_Mutation p.R100W 0.19 deleterious(0) possibly_damaging(0.757) TCGA-FD-A62N-01 15 93563403 93563403 C T CHD2 Nonsense_Mutation p.R1690* 0.10 TCGA-FD-A62N-01 16 29706096 29706096 C T QPRT Missense_Mutation p.S42L 0.19 tolerated(0.16) benign(0.187) TCGA-FD-A62N-01 16 55532291 55532291 G A MMP2 Missense_Mutation p.R567Q 0.14 tolerated(0.69) benign(0) TCGA-FD-A62N-01 16 72045979 72045979 G T DHODH Missense_Mutation p.G18W 0.08 deleterious(0) probably_damaging(0.994) TCGA-FD-A62N-01 17 33495335 33495335 C A UNC45B Silent p.I469I 0.14 TCGA-FD-A62N-01 17 33690414 33690414 G C SLFN11 Missense_Mutation p.T138S 0.11 tolerated(0.06) possibly_damaging(0.533) TCGA-FD-A62N-01 17 43246218 43246218 G A HEXIM2 Intron 0.12 TCGA-FD-A62N-01 17 54428176 54428176 C T ANKFN1 Nonsense_Mutation p.Q83* 0.16 TCGA-FD-A62N-01 17 59949628 59949628 G C INTS2 Missense_Mutation p.Q934E 0.15 deleterious(0) benign(0.186) TCGA-FD-A62N-01 17 7578471 7578471 G - TP53 Frame_Shift_Del p.G154Afs*16 0.14 TCGA-FD-A62N-01 17 7579544 7579556 TCCGGGGACAGCA - TP53 Frame_Shift_Del p.M44Tfs*75 0.10 TCGA-FD-A62N-01 17 79914937 79914937 C T NOTUM Missense_Mutation p.G237R 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A62N-01 18 21500943 21500943 G A LAMA3 Silent p.V2656V 0.18 TCGA-FD-A62N-01 18 43219851 43219851 G A SLC14A2 Silent p.L328L 0.17 TCGA-FD-A62N-01 19 17611133 17611133 C T SLC27A1 Missense_Mutation p.P418L 0.08 deleterious(0) probably_damaging(0.98) TCGA-FD-A62N-01 19 32845273 32845273 G A ZNF507 Missense_Mutation p.A513T 0.15 tolerated(0.21) probably_damaging(0.956) TCGA-FD-A62N-01 19 35657215 35657215 C T FXYD5 Silent p.I158I 0.12 TCGA-FD-A62N-01 19 36045905 36045905 G A ATP4A Silent p.P800P 0.10 TCGA-FD-A62N-01 19 38865493 38865493 G T PSMD8 Silent p.S84S 0.20 TCGA-FD-A62N-01 19 39868400 39868400 G A SAMD4B Silent p.E460E 0.10 TCGA-FD-A62N-01 19 39967027 39967027 C T SUPT5H Silent p.L1084L 0.14 TCGA-FD-A62N-01 19 39967084 39967084 C A SUPT5H 3'UTR 0.10 TCGA-FD-A62N-01 19 55177723 55177723 G T LILRB4 Missense_Mutation p.G303W 0.15 deleterious(0) probably_damaging(0.924) TCGA-FD-A62N-01 19 7685557 7685557 T C XAB2 Splice_Site p.X658_splice 0.17 TCGA-FD-A62N-01 1 100750810 100750810 G C RTCA Missense_Mutation p.E289Q 0.14 deleterious(0.03) benign(0.047) TCGA-FD-A62N-01 1 110584462 110584462 G A STRIP1 Silent p.L288L 0.11 TCGA-FD-A62N-01 1 111660792 111660792 C T DRAM2 Missense_Mutation p.R264K 0.07 tolerated_low_confidence(0.5) benign(0.002) TCGA-FD-A62N-01 1 156815473 156815473 C A INSRR Silent p.A704A 0.09 TCGA-FD-A62N-01 1 15988108 15988108 G T RSC1A1 Missense_Mutation p.R582L 0.10 tolerated(0.09) possibly_damaging(0.803) TCGA-FD-A62N-01 1 162829412 162829412 G T C1orf110 Missense_Mutation p.Q9K 0.30 tolerated(0.07) benign(0.173) TCGA-FD-A62N-01 1 186064618 186064618 G A HMCN1 Missense_Mutation p.G3513E 0.12 possibly_damaging(0.87) TCGA-FD-A62N-01 1 21887180 21887180 G A ALPL Silent p.L41L 0.17 TCGA-FD-A62N-01 1 228486333 228486333 G C OBSCN Missense_Mutation p.Q4375H 0.09 possibly_damaging(0.751) TCGA-FD-A62N-01 1 237837486 237837486 A G RYR2 Missense_Mutation p.K2894R 0.21 probably_damaging(0.957) TCGA-FD-A62N-01 1 248570298 248570298 C T OR2T1 Silent p.L335L 0.09 TCGA-FD-A62N-01 1 32573670 32573670 A T KPNA6 5'UTR 0.08 TCGA-FD-A62N-01 1 3319425 3319425 G T PRDM16 Missense_Mutation p.K249N 0.15 deleterious(0.01) benign(0.297) TCGA-FD-A62N-01 1 65130274 65130274 C T CACHD1 Missense_Mutation p.R679C 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A62N-01 1 6639581 6639581 C A TAS1R1 Silent p.L821L 0.11 TCGA-FD-A62N-01 1 7796516 7796516 C G CAMTA1 Nonsense_Mutation p.S1060* 0.16 TCGA-FD-A62N-01 1 78195559 78195559 C T USP33 Missense_Mutation p.G266R 0.06 deleterious(0) probably_damaging(1) TCGA-FD-A62N-01 1 87040282 87040282 T A CLCA4 Silent p.I509I 0.15 TCGA-FD-A62N-01 20 31805399 31805399 G T BPIFA3 Missense_Mutation p.L19F 0.07 tolerated(0.13) possibly_damaging(0.5) TCGA-FD-A62N-01 21 47700466 47700466 C T MCM3AP Silent p.K489K 0.10 TCGA-FD-A62N-01 2 1251110 1251110 G A SNTG2 Missense_Mutation p.M300I 0.22 deleterious(0) benign(0.378) TCGA-FD-A62N-01 2 144194529 144194529 C T ARHGAP15 Silent p.I207I 0.25 TCGA-FD-A62N-01 2 179539826 179539826 T A TTN Nonsense_Mutation p.K11518* 0.11 TCGA-FD-A62N-01 2 204309586 204309586 G A RAPH1 Intron 0.08 TCGA-FD-A62N-01 2 29165181 29165181 A G WDR43 Missense_Mutation p.T580A 0.12 tolerated(1) benign(0.001) TCGA-FD-A62N-01 2 75109335 75109335 C A HK2 Missense_Mutation p.S603Y 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A62N-01 3 113503122 113503122 T C ATP6V1A Missense_Mutation p.V88A 0.17 deleterious(0.02) probably_damaging(0.952) TCGA-FD-A62N-01 3 185997726 185997726 G A DGKG Missense_Mutation p.R236W 0.12 deleterious(0.01) possibly_damaging(0.582) TCGA-FD-A62N-01 3 185997727 185997727 G T DGKG Missense_Mutation p.D235E 0.12 deleterious(0) benign(0.405) TCGA-FD-A62N-01 3 21478684 21478684 C T ZNF385D Missense_Mutation p.G151R 0.17 tolerated(0.22) benign(0.017) TCGA-FD-A62N-01 3 42632367 42632367 C T SS18L2 5'UTR 0.14 TCGA-FD-A62N-01 3 49397743 49397743 C T RHOA Missense_Mutation p.A161T 0.12 deleterious(0) probably_damaging(0.952) TCGA-FD-A62N-01 3 49721550 49721550 G T MST1 Silent p.R697R 0.10 TCGA-FD-A62N-01 3 51449904 51449904 C A VPRBP Missense_Mutation p.D952Y 0.18 deleterious(0) probably_damaging(0.93) TCGA-FD-A62N-01 3 54930873 54930873 G A CACNA2D3 Missense_Mutation p.V782I 0.06 tolerated(0.24) benign(0.013) TCGA-FD-A62N-01 3 62189368 62189368 T A PTPRG Silent p.T633T 0.21 TCGA-FD-A62N-01 3 95374326 95374326 C T MTHFD2P1 RNA 0.15 TCGA-FD-A62N-01 4 89591320 89591320 G A HERC3 Missense_Mutation p.D610N 0.15 tolerated(0.27) benign(0.005) TCGA-FD-A62N-01 5 131657972 131657972 G A SLC22A4 Missense_Mutation p.A250T 0.28 deleterious(0) probably_damaging(0.987) TCGA-FD-A62N-01 5 137801498 137801498 C T EGR1 Silent p.I16I 0.30 TCGA-FD-A62N-01 5 176813424 176813424 G A SLC34A1 Missense_Mutation p.G130E 0.26 deleterious(0) probably_damaging(0.99) TCGA-FD-A62N-01 5 5186227 5186227 C A ADAMTS16 Silent p.R276R 0.40 TCGA-FD-A62N-01 5 5303690 5303690 A C ADAMTS16 Silent p.S999S 0.07 TCGA-FD-A62N-01 5 6751223 6751223 G A PAPD7 Missense_Mutation p.M394I 0.06 tolerated_low_confidence(0.37) benign(0.001) TCGA-FD-A62N-01 5 72201127 72201129 CAG - TNPO1 Splice_Site p.X864_splice 0.12 TCGA-FD-A62N-01 5 93388884 93388884 G A FAM172A Missense_Mutation p.P52L 0.10 tolerated(0.07) probably_damaging(0.941) TCGA-FD-A62N-01 6 108066250 108066250 G A SCML4 Silent p.S195S 0.09 TCGA-FD-A62N-01 6 109285437 109285437 C G ARMC2 Missense_Mutation p.S736C 0.24 deleterious(0) probably_damaging(0.99) TCGA-FD-A62N-01 6 116574343 116574343 T A TSPYL4 Missense_Mutation p.R277W 0.12 deleterious(0) probably_damaging(0.969) TCGA-FD-A62N-01 6 130762276 130762276 A G TMEM200A Missense_Mutation p.K237E 0.15 tolerated(0.82) benign(0.009) TCGA-FD-A62N-01 6 49409584 49409584 C G MUT Missense_Mutation p.E593Q 0.18 tolerated_low_confidence(0.14) benign(0.031) TCGA-FD-A62N-01 7 150269442 150269442 C T GIMAP4 Missense_Mutation p.P95L 0.13 tolerated(0.16) benign(0.03) TCGA-FD-A62N-01 7 154875940 154875940 G T HTR5A Missense_Mutation p.D273Y 0.15 deleterious(0) possibly_damaging(0.759) TCGA-FD-A62N-01 7 16823138 16823138 C T TSPAN13 3'UTR 0.13 TCGA-FD-A62N-01 7 45004619 45004619 G A MYO1G Silent p.A817A 0.17 TCGA-FD-A62N-01 7 6048914 6048914 G A AIMP2 5'UTR 0.15 TCGA-FD-A62N-01 7 72413604 72413604 G A POM121 Silent p.T759T 0.03 TCGA-FD-A62N-01 8 101960870 101960870 C A YWHAZ Missense_Mutation p.R83I 0.14 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-FD-A62N-01 8 105368418 105368418 A C DCSTAMP Missense_Mutation p.K469Q 0.24 deleterious(0.03) benign(0.001) TCGA-FD-A62N-01 8 110476613 110476613 A G PKHD1L1 Missense_Mutation p.I2518V 0.14 tolerated(0.06) possibly_damaging(0.573) TCGA-FD-A62N-01 8 139845374 139845374 C A COL22A1 Missense_Mutation p.L251F 0.22 unknown(0) TCGA-FD-A62N-01 8 41526084 41526084 T C ANK1 Splice_Site p.X1740_splice 0.21 TCGA-FD-A62N-01 8 68137217 68137217 C T ARFGEF1 Missense_Mutation p.V1377M 0.20 deleterious(0) probably_damaging(0.994) TCGA-FD-A62N-01 8 97307408 97307408 G C PTDSS1 Missense_Mutation p.G175A 0.09 deleterious(0.01) probably_damaging(1) TCGA-FD-A62N-01 9 117826125 117826125 C T TNC Missense_Mutation p.G1237E 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A62N-01 X 129306270 129306270 G A RAB33A Silent p.V78V 0.22 TCGA-FD-A62N-01 X 134990673 134990673 G A SAGE1 Missense_Mutation p.M446I 0.18 tolerated(0.86) benign(0.004) TCGA-FD-A62N-01 X 151908927 151908927 A T CSAG1 Missense_Mutation p.R56W 0.22 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-FD-A62N-01 X 153049630 153049630 C T SRPK3 Missense_Mutation p.S370F 0.16 deleterious(0.03) possibly_damaging(0.485) TCGA-FD-A62N-01 X 153050966 153050966 C T SRPK3 Silent p.L565L 0.14 TCGA-FD-A62N-01 X 21550181 21550181 T G CNKSR2 Silent p.T433T 0.16 TCGA-FD-A62N-01 X 53430749 53430749 C G SMC1A Missense_Mutation p.R758P 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A62N-01 X 55651071 55651071 T G FOXR2 Missense_Mutation p.F309L 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A62N-01 X 77224939 77224939 G A PGAM4 Missense_Mutation p.T66I 0.41 deleterious(0) probably_damaging(0.931) TCGA-FD-A62O-01 10 102766522 102766522 G T LZTS2 Missense_Mutation p.G536V 0.26 tolerated(0.15) probably_damaging(0.968) TCGA-FD-A62O-01 10 103920550 103920550 G C NOLC1 Missense_Mutation p.E481Q 0.25 deleterious_low_confidence(0) unknown(0) TCGA-FD-A62O-01 10 13164454 13164454 G A OPTN Silent p.E283E 0.56 TCGA-FD-A62O-01 10 24508702 24508702 G A KIAA1217 Missense_Mutation p.R73Q 0.05 tolerated(0.29) probably_damaging(0.996) TCGA-FD-A62O-01 10 25010906 25010906 G A ARHGAP21 5'UTR 0.79 TCGA-FD-A62O-01 10 62029927 62029927 G C ANK3 Missense_Mutation p.L159V 0.31 possibly_damaging(0.899) TCGA-FD-A62O-01 10 64000932 64000932 C T RTKN2 Nonsense_Mutation p.W113* 0.52 TCGA-FD-A62O-01 10 6527176 6527176 C T PRKCQ Missense_Mutation p.G319D 0.54 tolerated(0.12) benign(0.031) TCGA-FD-A62O-01 10 71692317 71692317 G A COL13A1 Missense_Mutation p.G551E 0.29 deleterious(0) probably_damaging(1) TCGA-FD-A62O-01 10 76719769 76719769 G A KAT6B Silent p.G221G 0.10 TCGA-FD-A62O-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.33 TCGA-FD-A62O-01 11 102395690 102395690 C T MMP7 Missense_Mutation p.R197H 0.32 tolerated(0.36) benign(0.004) TCGA-FD-A62O-01 11 119045440 119045440 C T NLRX1 Silent p.L376L 0.37 TCGA-FD-A62O-01 11 123811110 123811110 C T OR4D5 Missense_Mutation p.R263W 0.47 deleterious(0.01) benign(0.008) TCGA-FD-A62O-01 11 128842809 128842809 C T ARHGAP32 Missense_Mutation p.E1184K 0.58 tolerated_low_confidence(0.08) benign(0.352) TCGA-FD-A62O-01 11 14541721 14541721 C G PSMA1 Intron 0.49 TCGA-FD-A62O-01 11 40137176 40137176 C T LRRC4C Missense_Mutation p.E223K 0.48 deleterious(0) probably_damaging(0.989) TCGA-FD-A62O-01 11 5068254 5068254 C T OR52J3 Missense_Mutation p.R167C 0.32 deleterious(0.01) benign(0.192) TCGA-FD-A62O-01 11 5264408 5264408 G A HBG1 3'Flank 0.53 TCGA-FD-A62O-01 11 62911003 62911003 C T SLC22A24 Silent p.L83L 0.32 TCGA-FD-A62O-01 11 63594420 63594420 G A C11orf84 Missense_Mutation p.G319R 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A62O-01 11 6648201 6648201 G A DCHS1 Silent p.A2023A 0.43 TCGA-FD-A62O-01 11 67815128 67815128 C - TCIRG1 Frame_Shift_Del p.F441Sfs*87 0.36 TCGA-FD-A62O-01 11 67816372 67816372 G C TCIRG1 Missense_Mutation p.L527F 0.36 deleterious(0) probably_damaging(1) TCGA-FD-A62O-01 11 73638446 73638446 G C PAAF1 3'UTR 0.29 TCGA-FD-A62O-01 12 109072065 109072065 C T CORO1C Missense_Mutation p.E101K 0.24 deleterious(0.01) possibly_damaging(0.888) TCGA-FD-A62O-01 12 125398321 125398321 C G UBC 5'UTR 0.29 TCGA-FD-A62O-01 12 129822269 129822269 G A TMEM132D Silent p.V403V 0.62 TCGA-FD-A62O-01 12 15747921 15747921 G C PTPRO Missense_Mutation p.K1199N 0.60 deleterious(0) probably_damaging(0.999) TCGA-FD-A62O-01 12 40441970 40441970 G A SLC2A13 Missense_Mutation p.S200L 0.64 deleterious(0) possibly_damaging(0.864) TCGA-FD-A62O-01 12 50344803 50344803 G A AQP2 Missense_Mutation p.G64R 0.44 deleterious(0.01) probably_damaging(1) TCGA-FD-A62O-01 12 56488292 56488292 C T ERBB3 Missense_Mutation p.P604L 0.05 deleterious(0) possibly_damaging(0.484) TCGA-FD-A62O-01 12 57985040 57985040 C G PIP4K2C 5'Flank 0.33 TCGA-FD-A62O-01 12 57985144 57985144 C A PIP4K2C Missense_Mutation p.F24L 0.40 tolerated(0.72) unknown(0) TCGA-FD-A62O-01 12 6806658 6806658 G A PIANP Silent p.I106I 0.30 TCGA-FD-A62O-01 13 60616817 60616817 G A DIAPH3 Intron 0.31 TCGA-FD-A62O-01 14 100182497 100182497 G C CYP46A1 Missense_Mutation p.E290Q 0.20 deleterious(0.02) benign(0.378) TCGA-FD-A62O-01 14 105397280 105397280 G A PLD4 Splice_Site p.X306_splice 0.44 TCGA-FD-A62O-01 14 105478087 105478087 G C CDCA4 Silent p.V60V 0.61 TCGA-FD-A62O-01 14 20020001 20020001 C T POTEM Missense_Mutation p.G74R 0.09 tolerated_low_confidence(0.15) probably_damaging(0.997) TCGA-FD-A62O-01 14 30132933 30132933 G C PRKD1 Missense_Mutation p.S223C 0.50 deleterious(0.04) possibly_damaging(0.474) TCGA-FD-A62O-01 14 36244890 36244896 ATAGTAT - RALGAPA1 Frame_Shift_Del p.I54Mfs*8 0.39 TCGA-FD-A62O-01 14 38061375 38061375 G A FOXA1 Missense_Mutation p.P205L 0.47 deleterious(0.01) probably_damaging(0.988) TCGA-FD-A62O-01 14 44975242 44975242 G A FSCB Nonsense_Mutation p.Q317* 0.39 TCGA-FD-A62O-01 14 50089051 50089051 A T MGAT2 Silent p.V355V 0.38 TCGA-FD-A62O-01 14 55034708 55034708 C G SAMD4A Missense_Mutation p.A25G 0.49 tolerated(0.05) probably_damaging(0.93) TCGA-FD-A62O-01 14 62547650 62547650 C T SYT16 Silent p.S364S 0.42 TCGA-FD-A62O-01 14 62547863 62547863 C T SYT16 Silent p.F435F 0.31 TCGA-FD-A62O-01 14 75415234 75415234 G C PGF Missense_Mutation p.S123C 0.43 tolerated(0.1) benign(0.026) TCGA-FD-A62O-01 14 78142082 78142082 C T ALKBH1 Silent p.L219L 0.49 TCGA-FD-A62O-01 14 94756762 94756762 C T SERPINA10 Missense_Mutation p.E57K 0.45 tolerated(0.48) benign(0) TCGA-FD-A62O-01 15 25223010 25223010 C T SNRPN Missense_Mutation p.P169L 0.42 tolerated(0.09) unknown(0) TCGA-FD-A62O-01 15 25223027 25223027 C G SNRPN Missense_Mutation p.P175A 0.43 tolerated(0.22) unknown(0) TCGA-FD-A62O-01 15 34651890 34651890 G A LPCAT4 Silent p.F433F 0.38 TCGA-FD-A62O-01 15 42360937 42360937 C T PLA2G4D Silent p.A811A 0.47 TCGA-FD-A62O-01 15 43621593 43621593 C G LCMT2 Missense_Mutation p.L365F 0.38 deleterious(0.02) benign(0.036) TCGA-FD-A62O-01 15 45389563 45389563 C G DUOX2 Silent p.L1240L 0.46 TCGA-FD-A62O-01 15 50534321 50534321 G C HDC 3'UTR 0.35 TCGA-FD-A62O-01 15 69222902 69222902 C T SPESP1 5'UTR 0.42 TCGA-FD-A62O-01 15 76484326 76484327 GC - C15orf27 Frame_Shift_Del p.H265Pfs*76 0.39 TCGA-FD-A62O-01 15 83357943 83357943 C T AP3B2 Silent p.A77A 0.46 TCGA-FD-A62O-01 16 2153695 2153695 G A PKD1 Missense_Mutation p.S2788L 0.27 benign(0.371) TCGA-FD-A62O-01 16 27460584 27460584 C T IL21R Missense_Mutation p.P533S 0.35 tolerated(0.49) benign(0.011) TCGA-FD-A62O-01 16 27763055 27763055 G C KIAA0556 Missense_Mutation p.G1121A 0.53 deleterious(0) probably_damaging(1) TCGA-FD-A62O-01 16 28847485 28847485 G A ATXN2L Missense_Mutation p.D1043N 0.53 deleterious_low_confidence(0) possibly_damaging(0.741) TCGA-FD-A62O-01 16 30616194 30616194 G A ZNF689 Silent p.F298F 0.53 TCGA-FD-A62O-01 16 31131677 31131677 G A KAT8 Missense_Mutation p.E102K 0.50 deleterious(0) possibly_damaging(0.72) TCGA-FD-A62O-01 16 48174686 48174686 G A ABCC12 Missense_Mutation p.T190M 0.55 deleterious(0.02) possibly_damaging(0.898) TCGA-FD-A62O-01 16 48585361 48585361 C T N4BP1 Missense_Mutation p.G685R 0.42 tolerated(0.29) probably_damaging(1) TCGA-FD-A62O-01 16 51171062 51171062 G A SALL1 Silent p.T1312T 0.36 TCGA-FD-A62O-01 16 57265188 57265188 G T RSPRY1 Missense_Mutation p.D496Y 0.39 deleterious(0) possibly_damaging(0.819) TCGA-FD-A62O-01 16 64981896 64981896 C T CDH11 Silent p.G667G 0.49 TCGA-FD-A62O-01 16 719550 719550 C G RHOT2 Intron 0.53 TCGA-FD-A62O-01 16 72829054 72829054 G C ZFHX3 Silent p.L2509L 0.47 TCGA-FD-A62O-01 16 89256813 89256813 C T CDH15 Missense_Mutation p.R381W 0.43 tolerated(0.19) probably_damaging(0.953) TCGA-FD-A62O-01 17 15554928 15554928 G A RP11-385D13.1 5'UTR 0.77 TCGA-FD-A62O-01 17 2238900 2238900 C G TSR1 Missense_Mutation p.G109A 0.84 tolerated(0.94) benign(0.002) TCGA-FD-A62O-01 17 26879452 26879452 C G UNC119 Missense_Mutation p.E42Q 0.45 tolerated(0.25) possibly_damaging(0.727) TCGA-FD-A62O-01 17 35913425 35913425 G A SYNRG Silent p.F800F 0.94 TCGA-FD-A62O-01 17 63533001 63533001 C T AXIN2 Silent p.K631K 0.88 TCGA-FD-A62O-01 17 64641535 64641535 C T PRKCA Silent p.I145I 0.89 TCGA-FD-A62O-01 17 64880634 64880638 CCTCT - CACNG5 Frame_Shift_Del p.L143Sfs*15 0.27 TCGA-FD-A62O-01 17 7217675 7217675 G C GPS2 Missense_Mutation p.H84Q 0.82 tolerated(0.07) benign(0.402) TCGA-FD-A62O-01 17 80282743 80282743 C G SECTM1 Missense_Mutation p.E40Q 0.95 tolerated(0.18) probably_damaging(0.932) TCGA-FD-A62O-01 17 80386488 80386488 G C HEXDC Silent p.V83V 0.92 TCGA-FD-A62O-01 17 80726366 80726366 G A TBCD Missense_Mutation p.R169H 0.88 deleterious(0) probably_damaging(0.999) TCGA-FD-A62O-01 17 8272755 8272755 C G KRBA2 Missense_Mutation p.Q392H 0.80 deleterious(0.03) benign(0.142) TCGA-FD-A62O-01 17 8272818 8272818 C T KRBA2 Missense_Mutation p.M371I 0.87 tolerated(0.23) benign(0.13) TCGA-FD-A62O-01 18 2891551 2891551 C T EMILIN2 Missense_Mutation p.R476W 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A62O-01 18 9549239 9549239 C T PPP4R1 Missense_Mutation p.R882Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A62O-01 19 12759137 12759137 C G MAN2B1 Missense_Mutation p.R839P 0.40 deleterious(0.01) possibly_damaging(0.861) TCGA-FD-A62O-01 19 13395906 13395906 A G CACNA1A Missense_Mutation p.M1223T 0.54 benign(0.402) TCGA-FD-A62O-01 19 14268693 14268693 C T LPHN1 Splice_Site p.X850_splice 0.41 TCGA-FD-A62O-01 19 19905663 19905663 C T ZNF506 Missense_Mutation p.E345K 0.11 deleterious(0.05) benign(0.068) TCGA-FD-A62O-01 19 2717575 2717575 G C DIRAS1 Missense_Mutation p.S77C 0.28 deleterious(0) probably_damaging(0.985) TCGA-FD-A62O-01 19 39219929 39219929 G C ACTN4 Missense_Mutation p.E865Q 0.38 tolerated(0.11) benign(0.305) TCGA-FD-A62O-01 19 47137868 47137868 G A GNG8 Silent p.I24I 0.40 TCGA-FD-A62O-01 19 49558815 49558815 C A CGB7 5'UTR 0.45 TCGA-FD-A62O-01 19 55222029 55222029 C T AC098784.2 3'Flank 0.41 TCGA-FD-A62O-01 19 56133854 56133854 C T ZNF784 Missense_Mutation p.E79K 0.50 tolerated(0.11) benign(0.137) TCGA-FD-A62O-01 19 57326836 57326836 C T PEG3 Missense_Mutation p.D992N 0.42 tolerated(0.5) benign(0.01) TCGA-FD-A62O-01 19 9237549 9237549 G C OR7G3 Missense_Mutation p.I26M 0.42 deleterious(0.01) benign(0.088) TCGA-FD-A62O-01 19 9325375 9325375 G T OR7D4 Missense_Mutation p.L47M 0.55 deleterious(0.02) possibly_damaging(0.573) TCGA-FD-A62O-01 1 1330814 1330814 T C CCNL2 Missense_Mutation p.K185R 0.36 deleterious(0) probably_damaging(0.998) TCGA-FD-A62O-01 1 151396573 151396573 C T POGZ Missense_Mutation p.D459N 0.59 deleterious(0.01) possibly_damaging(0.499) TCGA-FD-A62O-01 1 152279165 152279165 C G FLG Missense_Mutation p.G2733R 0.12 benign(0.018) TCGA-FD-A62O-01 1 153932874 153932874 C T SLC39A1 Silent p.L225L 0.60 TCGA-FD-A62O-01 1 156913743 156913743 G T ARHGEF11 Silent p.I1073I 0.42 TCGA-FD-A62O-01 1 161161059 161161059 G A ADAMTS4 Missense_Mutation p.R795C 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A62O-01 1 161761271 161761271 C T ATF6 Missense_Mutation p.S143F 0.63 deleterious(0.05) benign(0.002) TCGA-FD-A62O-01 1 161761287 161761287 G A ATF6 Silent p.L148L 0.25 TCGA-FD-A62O-01 1 178411881 178411881 G T RASAL2 Missense_Mutation p.K333N 0.27 deleterious(0) probably_damaging(0.991) TCGA-FD-A62O-01 1 180006192 180006192 C G CEP350 Missense_Mutation p.Q1360E 0.79 probably_damaging(0.945) TCGA-FD-A62O-01 1 19449356 19449356 C T UBR4 Missense_Mutation p.A3263T 0.09 benign(0.298) TCGA-FD-A62O-01 1 19611217 19611218 AG - AKR7A3 Frame_Shift_Del p.F223Lfs*20 0.49 TCGA-FD-A62O-01 1 1961759 1961759 C T GABRD 3'UTR 0.43 TCGA-FD-A62O-01 1 201437761 201437761 C T PHLDA3 Missense_Mutation p.E52K 0.33 deleterious(0.01) possibly_damaging(0.84) TCGA-FD-A62O-01 1 201981271 201981272 - G ELF3 Frame_Shift_Ins p.D119Gfs*16 0.34 TCGA-FD-A62O-01 1 214820020 214820020 A G CENPF Silent p.L2369L 0.30 TCGA-FD-A62O-01 1 216258099 216258099 T C USH2A Missense_Mutation p.Y1703C 0.26 benign(0.271) TCGA-FD-A62O-01 1 227935705 227935705 G C SNAP47 Missense_Mutation p.V135L 0.24 deleterious(0.01) possibly_damaging(0.742) TCGA-FD-A62O-01 1 26609156 26609156 G A UBXN11 Silent p.L426L 0.36 TCGA-FD-A62O-01 1 27056181 27056181 C T ARID1A Nonsense_Mutation p.Q393* 0.33 TCGA-FD-A62O-01 1 27427711 27427711 C G SLC9A1 Missense_Mutation p.R698P 0.57 deleterious(0) probably_damaging(0.974) TCGA-FD-A62O-01 1 27614209 27614209 C T WDTC1 Silent p.A112A 0.21 TCGA-FD-A62O-01 1 33235835 33235835 C T KIAA1522 Missense_Mutation p.S352L 0.52 deleterious(0.01) unknown(0) TCGA-FD-A62O-01 1 35334284 35334284 G A DLGAP3 Missense_Mutation p.R803W 0.19 deleterious(0) possibly_damaging(0.683) TCGA-FD-A62O-01 1 39927577 39927577 G C MACF1 Missense_Mutation p.E5123D 0.28 possibly_damaging(0.805) TCGA-FD-A62O-01 1 40529967 40529967 G C CAP1 Missense_Mutation p.K121N 0.54 deleterious(0.04) probably_damaging(0.924) TCGA-FD-A62O-01 1 42657334 42657334 G A FOXJ3 Nonsense_Mutation p.Q331* 0.55 TCGA-FD-A62O-01 1 46747009 46747009 G C LRRC41 Nonsense_Mutation p.S515* 0.23 TCGA-FD-A62O-01 1 63877654 63877654 G C ALG6 Missense_Mutation p.W246C 0.51 deleterious(0) probably_damaging(0.997) TCGA-FD-A62O-01 1 94508323 94508323 G A ABCA4 Missense_Mutation p.R1108C 0.69 deleterious(0) possibly_damaging(0.901) TCGA-FD-A62O-01 20 20585924 20585924 C T RALGAPA2 Missense_Mutation p.D645N 0.30 deleterious(0) probably_damaging(0.917) TCGA-FD-A62O-01 20 30370105 30370105 C G TPX2 Missense_Mutation p.P370A 0.50 deleterious(0.01) probably_damaging(0.959) TCGA-FD-A62O-01 20 34292366 34292366 G C RBM39 3'UTR 0.38 TCGA-FD-A62O-01 20 37383764 37383764 G A ACTR5 Missense_Mutation p.E314K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A62O-01 20 3761899 3761899 C G SPEF1 Missense_Mutation p.Q12H 0.29 tolerated(0.08) probably_damaging(0.994) TCGA-FD-A62O-01 20 42635189 42635189 C A TOX2 Silent p.T56T 0.24 TCGA-FD-A62O-01 20 47892368 47892368 C G ZNFX1 Missense_Mutation p.E3D 0.34 tolerated_low_confidence(1) benign(0) TCGA-FD-A62O-01 20 49571809 49571809 C T DPM1 Missense_Mutation p.E59K 0.44 tolerated(0.09) benign(0.232) TCGA-FD-A62O-01 20 57876486 57876486 C G EDN3 Missense_Mutation p.S25C 0.61 deleterious(0.01) possibly_damaging(0.723) TCGA-FD-A62O-01 20 58422235 58422235 G A PHACTR3 3'UTR 0.22 TCGA-FD-A62O-01 20 61542751 61542751 C T DIDO1 Missense_Mutation p.E72K 0.52 probably_damaging(0.997) TCGA-FD-A62O-01 21 16340310 16340310 G A NRIP1 Silent p.L68L 0.16 TCGA-FD-A62O-01 22 31530066 31530066 C T INPP5J Silent p.F526F 0.46 TCGA-FD-A62O-01 22 36627450 36627450 G A APOL2 Silent p.L25L 0.47 TCGA-FD-A62O-01 22 36715631 36715631 G A MYH9 Silent p.F354F 0.32 TCGA-FD-A62O-01 22 38823565 38823565 C T KCNJ4 Silent p.A191A 0.45 TCGA-FD-A62O-01 22 42540400 42540400 C G RP4-669P10.16 5'Flank 0.38 TCGA-FD-A62O-01 22 51011389 51011389 C A CPT1B Nonsense_Mutation p.E423* 0.48 TCGA-FD-A62O-01 2 125547660 125547660 C G CNTNAP5 Missense_Mutation p.H977Q 0.54 tolerated(0.41) benign(0.002) TCGA-FD-A62O-01 2 131812888 131812888 G A FAM168B Silent p.V144V 0.35 TCGA-FD-A62O-01 2 133175196 133175196 C G GPR39 Missense_Mutation p.S194C 0.43 tolerated(0.09) probably_damaging(0.923) TCGA-FD-A62O-01 2 166237135 166237135 T C SCN2A Missense_Mutation p.Y1448H 0.35 deleterious(0) possibly_damaging(0.888) TCGA-FD-A62O-01 2 178481599 178481599 C G TTC30A Missense_Mutation p.E611Q 0.49 deleterious(0) possibly_damaging(0.824) TCGA-FD-A62O-01 2 207169443 207169443 C G ZDBF2 Nonsense_Mutation p.S64* 0.27 TCGA-FD-A62O-01 2 223085954 223085954 T C PAX3 Silent p.T315T 0.54 TCGA-FD-A62O-01 2 26800452 26800452 G A C2orf70 Silent p.A139A 0.51 TCGA-FD-A62O-01 2 42578468 42578468 C T COX7A2L Missense_Mutation p.R79Q 0.38 tolerated(0.2) benign(0.017) TCGA-FD-A62O-01 3 10028321 10028321 C T EMC3 Missense_Mutation p.D9N 0.32 deleterious(0) probably_damaging(1) TCGA-FD-A62O-01 3 112987159 112987159 C G BOC Missense_Mutation p.F130L 0.32 deleterious(0.02) probably_damaging(1) TCGA-FD-A62O-01 3 121366283 121366283 C T HCLS1 Silent p.L57L 0.31 TCGA-FD-A62O-01 3 142030405 142030405 C T XRN1 Missense_Mutation p.R1690K 0.40 deleterious_low_confidence(0.04) benign(0.008) TCGA-FD-A62O-01 3 180364958 180364958 G A CCDC39 Missense_Mutation p.A479V 0.46 tolerated(0.78) benign(0.002) TCGA-FD-A62O-01 3 183910614 183910614 C T ABCF3 Silent p.F560F 0.44 TCGA-FD-A62O-01 3 19322743 19322743 G A KCNH8 Missense_Mutation p.D122N 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-FD-A62O-01 3 196088762 196088762 C G UBXN7 Missense_Mutation p.D421H 0.44 deleterious(0) probably_damaging(0.996) TCGA-FD-A62O-01 3 3887743 3887743 C G LRRN1 Nonsense_Mutation p.S473* 0.51 TCGA-FD-A62O-01 3 47894425 47894425 C A MAP4 3'UTR 0.34 TCGA-FD-A62O-01 3 49412945 49412945 G C RHOA Missense_Mutation p.S26R 0.53 deleterious(0.01) benign(0.375) TCGA-FD-A62O-01 3 50388031 50388031 G C NPRL2 Missense_Mutation p.T18R 0.27 deleterious(0.03) possibly_damaging(0.622) TCGA-FD-A62O-01 3 52558023 52558023 C G STAB1 Missense_Mutation p.S2511C 0.39 tolerated(0.06) probably_damaging(0.931) TCGA-FD-A62O-01 3 98600544 98600544 C T DCBLD2 Silent p.Q91Q 0.36 TCGA-FD-A62O-01 4 107252969 107252969 G C AIMP1 Missense_Mutation p.E202Q 0.52 tolerated(0.47) benign(0.122) TCGA-FD-A62O-01 4 125590189 125590189 C G ANKRD50 Missense_Mutation p.E1415Q 0.27 deleterious_low_confidence(0.01) benign(0.214) TCGA-FD-A62O-01 4 125591224 125591224 C T ANKRD50 Missense_Mutation p.D1070N 0.41 tolerated(0.57) possibly_damaging(0.557) TCGA-FD-A62O-01 4 125591335 125591335 C G ANKRD50 Missense_Mutation p.E1033Q 0.40 deleterious(0.03) benign(0.411) TCGA-FD-A62O-01 4 153803904 153803904 G A ARFIP1 Silent p.Q221Q 0.45 TCGA-FD-A62O-01 4 154249781 154249781 G A TRIM2 Missense_Mutation p.G708R 0.30 deleterious(0) probably_damaging(0.998) TCGA-FD-A62O-01 4 155237084 155237084 C T DCHS2 Silent p.L1237L 0.42 TCGA-FD-A62O-01 4 167022097 167022097 G A TLL1 3'UTR 0.56 TCGA-FD-A62O-01 4 187534351 187534351 G A FAT1 Silent p.F3125F 0.52 TCGA-FD-A62O-01 4 3769561 3769561 G A ADRA2C Missense_Mutation p.E410K 0.47 tolerated(0.2) benign(0.121) TCGA-FD-A62O-01 4 68928499 68928499 T C TMPRSS11F Intron 0.28 TCGA-FD-A62O-01 4 68928540 68928540 G A TMPRSS11F Intron 0.24 TCGA-FD-A62O-01 4 71891532 71891532 G C DCK Splice_Site p.X184_splice 0.47 TCGA-FD-A62O-01 4 79772117 79772117 C G BMP2K Missense_Mutation p.L264V 0.35 deleterious(0.04) probably_damaging(0.928) TCGA-FD-A62O-01 4 85657375 85657375 G A WDFY3 Missense_Mutation p.S2288L 0.52 tolerated(0.23) benign(0.04) TCGA-FD-A62O-01 5 10280609 10280609 C T CMBL Missense_Mutation p.E232K 0.30 deleterious(0) probably_damaging(0.997) TCGA-FD-A62O-01 5 112174241 112174241 G T APC Nonsense_Mutation p.E984* 0.82 TCGA-FD-A62O-01 5 112174538 112174538 G C APC Missense_Mutation p.D1083H 0.68 possibly_damaging(0.738) TCGA-FD-A62O-01 5 140558309 140558309 G A PCDHB8 Missense_Mutation p.E232K 0.27 tolerated_low_confidence(0.59) benign(0.005) TCGA-FD-A62O-01 5 140720479 140720479 G A PCDHGA2 Silent p.Q647Q 0.82 TCGA-FD-A62O-01 5 150422117 150422117 T G TNIP1 Missense_Mutation p.K373T 0.79 deleterious(0) benign(0.22) TCGA-FD-A62O-01 5 32126710 32126710 G A GOLPH3 Nonsense_Mutation p.Q169* 0.25 TCGA-FD-A62O-01 5 33937738 33937738 G A RXFP3 Missense_Mutation p.R298H 0.24 tolerated(0.29) benign(0.013) TCGA-FD-A62O-01 5 34824498 34824498 G A RAI14 Missense_Mutation p.E854K 0.32 tolerated(0.28) benign(0.236) TCGA-FD-A62O-01 5 5239963 5239963 C T ADAMTS16 Silent p.F816F 0.05 TCGA-FD-A62O-01 5 5473848 5473848 G A KIAA0947 Missense_Mutation p.D2134N 0.22 deleterious(0.03) probably_damaging(1) TCGA-FD-A62O-01 5 86627234 86627238 TTATC - RASA1 Frame_Shift_Del p.L205Kfs*4 0.79 TCGA-FD-A62O-01 6 151226792 151226792 G A MTHFD1L Missense_Mutation p.E263K 0.38 tolerated(0.89) benign(0.053) TCGA-FD-A62O-01 6 151671171 151671171 C G AKAP12 Missense_Mutation p.Q549E 0.51 tolerated(0.14) benign(0.079) TCGA-FD-A62O-01 6 155500278 155500278 G A TIAM2 Splice_Site p.X876_splice 0.46 TCGA-FD-A62O-01 6 159672434 159672434 C A FNDC1 Silent p.P1645P 0.27 TCGA-FD-A62O-01 6 26285756 26285756 G A HIST1H4H 5'UTR 0.50 TCGA-FD-A62O-01 6 30920126 30920126 G C DPCR1 Missense_Mutation p.E1295D 0.33 tolerated(0.09) benign(0.125) TCGA-FD-A62O-01 6 31500615 31500615 T G DDX39B Missense_Mutation p.K270T 0.30 tolerated(0.36) benign(0.003) TCGA-FD-A62O-01 6 33141306 33141306 G A COL11A2 Silent p.N799N 0.37 TCGA-FD-A62O-01 6 47512440 47512440 G A CD2AP Missense_Mutation p.E140K 0.47 deleterious(0) benign(0.224) TCGA-FD-A62O-01 6 50718975 50718975 G A TFAP2D Silent p.L359L 0.37 TCGA-FD-A62O-01 6 52101937 52101937 G A IL17F Missense_Mutation p.S95L 0.17 deleterious(0.01) possibly_damaging(0.68) TCGA-FD-A62O-01 6 56347628 56347628 C T DST Silent p.L4462L 0.33 TCGA-FD-A62O-01 6 73951151 73951151 C A KHDC1 3'UTR 0.32 TCGA-FD-A62O-01 7 100346046 100346046 A T ZAN Missense_Mutation p.N401I 0.39 probably_damaging(0.979) TCGA-FD-A62O-01 7 103019687 103019687 C T SLC26A5 Intron 0.32 TCGA-FD-A62O-01 7 103338428 103338428 A G RELN Missense_Mutation p.Y339H 0.51 deleterious(0.04) probably_damaging(0.994) TCGA-FD-A62O-01 7 117864881 117864881 C T ANKRD7 5'UTR 0.40 TCGA-FD-A62O-01 7 142124384 142124384 G A TRBV6-8 Silent p.L32L 0.43 TCGA-FD-A62O-01 7 142124391 142124391 G C TRBV6-8 Missense_Mutation p.F29L 0.43 deleterious(0.03) benign(0.089) TCGA-FD-A62O-01 7 142124405 142124405 G C TRBV6-8 Missense_Mutation p.Q25E 0.39 deleterious(0) probably_damaging(0.993) TCGA-FD-A62O-01 7 143807436 143807436 C T OR2A2 Missense_Mutation p.A254V 0.53 deleterious(0.01) possibly_damaging(0.63) TCGA-FD-A62O-01 7 150742491 150742491 C T ABCB8 3'UTR 0.20 TCGA-FD-A62O-01 7 43485142 43485142 G A HECW1 Missense_Mutation p.V791M 0.32 tolerated_low_confidence(0.31) benign(0.007) TCGA-FD-A62O-01 7 43531696 43531696 G C HECW1 Missense_Mutation p.R1086T 0.13 tolerated(0.27) possibly_damaging(0.517) TCGA-FD-A62O-01 7 43531747 43531747 G A HECW1 Missense_Mutation p.R1103Q 0.15 tolerated(0.07) benign(0.047) TCGA-FD-A62O-01 7 92157753 92157753 C T PEX1 5'UTR 0.57 TCGA-FD-A62O-01 8 101226083 101226083 C T SPAG1 Missense_Mutation p.S491L 0.19 deleterious(0) probably_damaging(0.982) TCGA-FD-A62O-01 8 134237736 134237736 C T WISP1 Silent p.I238I 0.33 TCGA-FD-A62O-01 8 145749909 145749909 G A LRRC24 Silent p.F118F 0.62 TCGA-FD-A62O-01 8 145753342 145753342 G A C8orf82 Intron 0.05 TCGA-FD-A62O-01 8 30209843 30209843 C T TUBBP1 RNA 0.65 TCGA-FD-A62O-01 8 53569251 53569251 T C RB1CC1 Silent p.L1046L 0.27 TCGA-FD-A62O-01 8 64098993 64098993 C T YTHDF3 Nonsense_Mutation p.Q141* 0.21 TCGA-FD-A62O-01 8 69730601 69730601 C G C8orf34 3'UTR 0.29 TCGA-FD-A62O-01 8 94797470 94797470 G C TMEM67 Missense_Mutation p.K384N 0.09 deleterious(0.03) benign(0.01) TCGA-FD-A62O-01 8 94798572 94798572 G C TMEM67 Silent p.L470L 0.08 TCGA-FD-A62O-01 8 95952399 95952399 G A TP53INP1 Silent p.I54I 0.55 TCGA-FD-A62O-01 9 130495542 130495542 C A TOR2A Intron 0.91 TCGA-FD-A62O-01 9 131772474 131772474 G A SH3GLB2 Silent p.L221L 0.88 TCGA-FD-A62O-01 9 135202958 135202958 G C SETX Missense_Mutation p.L1343V 0.83 deleterious(0) possibly_damaging(0.76) TCGA-FD-A62O-01 9 140080711 140080711 C T ANAPC2 Missense_Mutation p.E280K 0.81 deleterious(0.05) possibly_damaging(0.707) TCGA-FD-A62O-01 9 33463366 33463366 C T NOL6 Missense_Mutation p.R1023H 0.15 tolerated(0.55) benign(0.107) TCGA-FD-A62O-01 9 91616568 91616568 G A S1PR3 Silent p.R151R 0.85 TCGA-FD-A62O-01 9 95414874 95414874 C G IPPK Missense_Mutation p.K91N 0.88 deleterious(0.02) possibly_damaging(0.538) TCGA-FD-A62O-01 X 11780321 11780321 C G MSL3 Missense_Mutation p.L180V 0.82 deleterious(0) probably_damaging(0.999) TCGA-FD-A62O-01 X 125299121 125299121 G A DCAF12L2 Missense_Mutation p.R263C 0.90 tolerated(0.31) benign(0.005) TCGA-FD-A62O-01 X 1407682 1407682 C G CSF2RA Missense_Mutation p.S125C 0.39 deleterious(0) probably_damaging(0.971) TCGA-FD-A62O-01 X 15266882 15266882 G C ASB9 Silent p.L248L 0.90 TCGA-FD-A62O-01 X 155227374 155227374 A C IL9R 5'UTR 0.42 TCGA-FD-A62O-01 X 54012300 54012300 T C PHF8 Missense_Mutation p.D729G 0.91 deleterious(0.01) possibly_damaging(0.799) TCGA-FD-A62O-01 X 77096782 77096782 C G MAGT1 Missense_Mutation p.E320Q 0.83 deleterious(0.01) possibly_damaging(0.771) TCGA-FD-A62O-01 Y 21877606 21877606 C T KDM5D Missense_Mutation p.E745K 0.86 deleterious(0.04) possibly_damaging(0.706) TCGA-FD-A62O-01 Y 21877819 21877819 C T KDM5D Silent p.K701K 0.80 TCGA-FD-A62O-01 Y 21877845 21877845 C T KDM5D Missense_Mutation p.D693N 0.82 deleterious(0) possibly_damaging(0.786) TCGA-FD-A62P-01 10 105179399 105179399 G A PDCD11 Silent p.K737K 0.20 TCGA-FD-A62P-01 10 105218185 105218185 G A CALHM1 Silent p.L108L 0.21 TCGA-FD-A62P-01 10 121586895 121586895 C G INPP5F Nonsense_Mutation p.S1001* 0.05 TCGA-FD-A62P-01 10 13628946 13628946 G A PRPF18 5'UTR 0.21 TCGA-FD-A62P-01 10 22095013 22095013 C T DNAJC1 Missense_Mutation p.E332K 0.36 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 10 28023689 28023689 G A MKX Silent p.N178N 0.09 TCGA-FD-A62P-01 10 31809260 31809260 G C ZEB1 Missense_Mutation p.E334Q 0.17 deleterious(0) possibly_damaging(0.833) TCGA-FD-A62P-01 10 5788831 5788831 C T FAM208B Silent p.V1149V 0.17 TCGA-FD-A62P-01 10 64135984 64135984 A T ZNF365 Missense_Mutation p.Y11F 0.34 tolerated_low_confidence(0.07) possibly_damaging(0.798) TCGA-FD-A62P-01 10 69699371 69699371 C G HERC4 Missense_Mutation p.E857Q 0.19 deleterious(0) probably_damaging(0.989) TCGA-FD-A62P-01 10 70405188 70405188 C T TET1 Missense_Mutation p.S901L 0.07 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 10 71136783 71136783 G A HK1 Silent p.R327R 0.10 TCGA-FD-A62P-01 10 71146172 71146172 G C HK1 Missense_Mutation p.E649Q 0.07 tolerated(0.84) benign(0.022) TCGA-FD-A62P-01 10 74828691 74828691 C G P4HA1 Missense_Mutation p.D126H 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 10 74899185 74899185 C G ECD Missense_Mutation p.E468Q 0.06 tolerated(0.21) possibly_damaging(0.694) TCGA-FD-A62P-01 10 75053056 75053056 C G TTC18 Missense_Mutation p.E649Q 0.20 tolerated(0.23) possibly_damaging(0.801) TCGA-FD-A62P-01 10 87615859 87615859 G A GRID1 Missense_Mutation p.A347V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A62P-01 10 95418767 95418767 T C PDE6C Splice_Site p.X715_splice 0.23 TCGA-FD-A62P-01 11 102826338 102826338 C T MMP13 Missense_Mutation p.E33K 0.30 tolerated(0.22) benign(0.015) TCGA-FD-A62P-01 11 113669778 113669778 G C USP28 3'UTR 0.38 TCGA-FD-A62P-01 11 116701486 116701486 C G APOC3 Intron 0.12 TCGA-FD-A62P-01 11 118220500 118220500 C A CD3G Nonsense_Mutation p.S41* 0.06 TCGA-FD-A62P-01 11 124294447 124294447 G C OR8B4 Silent p.V107V 0.06 TCGA-FD-A62P-01 11 18373961 18373961 G T GTF2H1 Nonsense_Mutation p.E410* 0.15 TCGA-FD-A62P-01 11 19258993 19258993 C G E2F8 Missense_Mutation p.E107Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 11 34129870 34129870 G T NAT10 Missense_Mutation p.G33V 0.28 deleterious(0) benign(0.217) TCGA-FD-A62P-01 11 46400546 46400546 G A DGKZ Silent p.Q996Q 0.18 TCGA-FD-A62P-01 11 46765597 46765597 C T CKAP5 Silent p.E2025E 0.11 TCGA-FD-A62P-01 11 47303140 47303140 G C MADD Missense_Mutation p.M435I 0.08 deleterious(0.03) benign(0.354) TCGA-FD-A62P-01 11 47304481 47304481 C T MADD Missense_Mutation p.P608L 0.06 tolerated(0.11) possibly_damaging(0.616) TCGA-FD-A62P-01 11 47307057 47307057 G C MADD Missense_Mutation p.E823Q 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.645) TCGA-FD-A62P-01 11 47824993 47824993 C T NUP160 Silent p.Q924Q 0.11 TCGA-FD-A62P-01 11 59224853 59224853 G C OR4D6 Silent p.V140V 0.07 TCGA-FD-A62P-01 11 61026493 61026493 G A VWCE Missense_Mutation p.S841F 0.14 deleterious_low_confidence(0.03) benign(0.015) TCGA-FD-A62P-01 11 61404654 61404654 G A RPLP0P2 RNA 0.11 TCGA-FD-A62P-01 11 62284982 62284982 T G AHNAK Missense_Mutation p.Q5636P 0.23 possibly_damaging(0.852) TCGA-FD-A62P-01 11 62299876 62299876 G A AHNAK Silent p.V671V 0.08 TCGA-FD-A62P-01 11 62300753 62300753 G A AHNAK Missense_Mutation p.S379L 0.09 probably_damaging(0.986) TCGA-FD-A62P-01 11 63586438 63586438 G A C11orf84 Missense_Mutation p.E300K 0.14 deleterious_low_confidence(0.04) benign(0.03) TCGA-FD-A62P-01 11 63961765 63961765 G T STIP1 Silent p.L108L 0.08 TCGA-FD-A62P-01 11 64026126 64026126 G C PLCB3 Missense_Mutation p.E398D 0.21 deleterious(0.04) probably_damaging(0.986) TCGA-FD-A62P-01 11 64884753 64884753 G C ZNHIT2 Missense_Mutation p.P125A 0.16 tolerated(0.15) benign(0.003) TCGA-FD-A62P-01 11 64981525 64981525 C G CAPN1 3'Flank 0.31 TCGA-FD-A62P-01 11 65293603 65293603 C G SCYL1 Silent p.L128L 0.12 TCGA-FD-A62P-01 11 65293630 65293630 C T SCYL1 Silent p.L137L 0.10 TCGA-FD-A62P-01 11 65293753 65293753 C A SCYL1 Silent p.I178I 0.13 TCGA-FD-A62P-01 11 65347661 65347661 C T EHBP1L1 Missense_Mutation p.S141L 0.22 deleterious(0) probably_damaging(0.995) TCGA-FD-A62P-01 11 65792886 65792886 G C CATSPER1 Missense_Mutation p.T322S 0.16 tolerated(1) benign(0.004) TCGA-FD-A62P-01 11 65793037 65793037 G A CATSPER1 Missense_Mutation p.H272Y 0.29 tolerated(0.67) benign(0.13) TCGA-FD-A62P-01 11 6644737 6644737 G A DCHS1 Missense_Mutation p.L2724F 0.20 deleterious(0.04) probably_damaging(0.995) TCGA-FD-A62P-01 11 71718419 71718419 G C NUMA1 Missense_Mutation p.S1760C 0.09 probably_damaging(0.967) TCGA-FD-A62P-01 11 73669370 73669370 G A DNAJB13 Missense_Mutation p.R26K 0.16 tolerated(1) benign(0.003) TCGA-FD-A62P-01 11 75001077 75001077 G T ARRB1 Missense_Mutation p.F9L 0.10 deleterious(0) possibly_damaging(0.591) TCGA-FD-A62P-01 11 77775065 77775065 G T THRSP Silent p.G46G 0.08 TCGA-FD-A62P-01 11 77775081 77775081 G A THRSP Missense_Mutation p.E52K 0.07 tolerated(0.76) benign(0.037) TCGA-FD-A62P-01 11 78433899 78433902 CTCC - TENM4 Frame_Shift_Del p.G1204Afs*60 0.12 TCGA-FD-A62P-01 11 788510 788510 C G CEND1 Missense_Mutation p.E23Q 0.16 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-FD-A62P-01 11 82868440 82868440 C T PCF11 5'UTR 0.16 TCGA-FD-A62P-01 11 8724227 8724227 T C ST5 Missense_Mutation p.H871R 0.10 deleterious(0) probably_damaging(0.984) TCGA-FD-A62P-01 11 88911552 88911552 C T TYR Missense_Mutation p.T144I 0.20 deleterious(0.03) benign(0.049) TCGA-FD-A62P-01 11 89892446 89892446 G A NAALAD2 Silent p.K310K 0.20 TCGA-FD-A62P-01 11 94862452 94862452 C T ENDOD1 Silent p.V404V 0.07 TCGA-FD-A62P-01 12 112607445 112607445 C T HECTD4 Missense_Mutation p.E3878K 0.12 benign(0.262) TCGA-FD-A62P-01 12 11547453 11547453 C T PRB2 Missense_Mutation p.E26K 0.03 tolerated_low_confidence(0.13) unknown(0) TCGA-FD-A62P-01 12 120580502 120580502 C G GCN1L1 Missense_Mutation p.E1880Q 0.19 benign(0.227) TCGA-FD-A62P-01 12 123641419 123641419 C T MPHOSPH9 Missense_Mutation p.E1011K 0.15 deleterious(0) probably_damaging(0.998) TCGA-FD-A62P-01 12 129559043 129559043 C A TMEM132D Missense_Mutation p.D893Y 0.18 deleterious(0) probably_damaging(0.94) TCGA-FD-A62P-01 12 21919111 21919111 C T KCNJ8 Missense_Mutation p.R274H 0.21 tolerated(0.27) benign(0.342) TCGA-FD-A62P-01 12 22678570 22678570 G A C2CD5 Missense_Mutation p.S140L 0.33 deleterious(0) possibly_damaging(0.696) TCGA-FD-A62P-01 12 23793772 23793772 G A SOX5 Missense_Mutation p.P331S 0.13 tolerated(0.13) probably_damaging(0.998) TCGA-FD-A62P-01 12 31566423 31566423 C G DENND5B Missense_Mutation p.K876N 0.15 deleterious(0) probably_damaging(0.974) TCGA-FD-A62P-01 12 41316180 41316180 C T CNTN1 Missense_Mutation p.S117F 0.10 deleterious(0.04) possibly_damaging(0.675) TCGA-FD-A62P-01 12 41582333 41582333 G A PDZRN4 Missense_Mutation p.E26K 0.33 deleterious_low_confidence(0) benign(0.022) TCGA-FD-A62P-01 12 46245083 46245083 G A ARID2 Silent p.L1059L 0.23 TCGA-FD-A62P-01 12 49445521 49445521 C A KMT2D Nonsense_Mutation p.E649* 0.11 TCGA-FD-A62P-01 12 50388246 50388246 G C RACGAP1 Missense_Mutation p.S364C 0.06 deleterious(0.04) possibly_damaging(0.677) TCGA-FD-A62P-01 12 52680903 52680903 C T KRT81 Silent p.L410L 0.05 TCGA-FD-A62P-01 12 52681092 52681092 C T KRT81 Silent p.E347E 0.07 TCGA-FD-A62P-01 12 53702253 53702253 C G AAAS Missense_Mutation p.E383Q 0.18 tolerated(0.13) possibly_damaging(0.542) TCGA-FD-A62P-01 12 56712058 56712058 C G PAN2 Missense_Mutation p.W1179C 0.08 deleterious(0) probably_damaging(0.997) TCGA-FD-A62P-01 12 57492859 57492859 C T STAT6 Missense_Mutation p.E632K 0.10 tolerated(0.4) benign(0.395) TCGA-FD-A62P-01 12 62749191 62749191 G A USP15 Missense_Mutation p.E284K 0.16 tolerated(0.89) benign(0.109) TCGA-FD-A62P-01 12 6334630 6334630 C G CD9 Silent p.L35L 0.10 TCGA-FD-A62P-01 12 6344685 6344685 C G CD9 Nonsense_Mutation p.S164* 0.52 TCGA-FD-A62P-01 12 6639064 6639064 C G NCAPD2 Missense_Mutation p.I1259M 0.51 deleterious(0) benign(0.418) TCGA-FD-A62P-01 12 6707178 6707178 C T CHD4 Missense_Mutation p.E592K 0.06 deleterious(0.01) possibly_damaging(0.636) TCGA-FD-A62P-01 12 7288068 7288068 T A CLSTN3 Missense_Mutation p.Y177N 0.14 deleterious(0) possibly_damaging(0.517) TCGA-FD-A62P-01 12 7639175 7639175 G T CD163 Missense_Mutation p.S793Y 0.06 deleterious(0) probably_damaging(0.971) TCGA-FD-A62P-01 13 103249370 103249370 C T TPP2 5'UTR 0.10 TCGA-FD-A62P-01 13 113862471 113862471 C T PCID2 Intron 0.27 TCGA-FD-A62P-01 13 22275493 22275493 G C FGF9 Missense_Mutation p.Q182H 0.20 tolerated(0.32) benign(0.063) TCGA-FD-A62P-01 13 25274961 25274961 G A ATP12A Silent p.P600P 0.08 TCGA-FD-A62P-01 13 28623662 28623662 C T FLT3 Missense_Mutation p.E299K 0.25 tolerated(0.13) benign(0.196) TCGA-FD-A62P-01 13 32835905 32835905 C G FRY Silent p.S2523S 0.21 TCGA-FD-A62P-01 13 46543910 46543910 C G ZC3H13 Missense_Mutation p.Q923H 0.06 unknown(0) TCGA-FD-A62P-01 13 52602452 52602452 C G UTP14C Intron 0.10 TCGA-FD-A62P-01 13 53422407 53422407 C T PCDH8 Missense_Mutation p.M55I 0.08 tolerated(0.91) benign(0.002) TCGA-FD-A62P-01 13 76111729 76111729 C T COMMD6 Intron 0.11 TCGA-FD-A62P-01 14 106091356 106091356 A T IGHG4 Missense_Mutation p.Y180N 0.13 deleterious(0) possibly_damaging(0.795) TCGA-FD-A62P-01 14 24729203 24729203 C G TGM1 Silent p.G273G 0.14 TCGA-FD-A62P-01 14 31081581 31081581 G A G2E3 Missense_Mutation p.E557K 0.14 deleterious(0.01) possibly_damaging(0.825) TCGA-FD-A62P-01 14 38678852 38678852 T C SSTR1 Silent p.Y86Y 0.21 TCGA-FD-A62P-01 14 60212613 60212613 C G RTN1 Missense_Mutation p.Q276H 0.19 tolerated(0.13) benign(0.235) TCGA-FD-A62P-01 14 61113094 61113094 C T SIX1 Silent p.S254S 0.21 TCGA-FD-A62P-01 14 73735301 73735301 C T PAPLN Silent p.V1152V 0.19 TCGA-FD-A62P-01 14 78187152 78187152 C A SNW1 Nonsense_Mutation p.E384* 0.15 TCGA-FD-A62P-01 14 78205311 78205311 C G SNW1 Missense_Mutation p.E142Q 0.16 tolerated(0.09) benign(0.175) TCGA-FD-A62P-01 14 79117670 79117670 G C NRXN3 Splice_Site p.X34_splice 0.18 TCGA-FD-A62P-01 14 89171301 89171301 G A EML5 Nonsense_Mutation p.Q652* 0.19 TCGA-FD-A62P-01 14 92559658 92559658 C T ATXN3 Missense_Mutation p.E109K 0.36 tolerated(0.11) benign(0.281) TCGA-FD-A62P-01 14 95670235 95670235 G A CLMN Missense_Mutation p.S484F 0.08 deleterious_low_confidence(0.02) benign(0.004) TCGA-FD-A62P-01 14 95906274 95906274 C T SYNE3 Missense_Mutation p.E684K 0.07 tolerated(0.16) benign(0.159) TCGA-FD-A62P-01 15 27126077 27126077 G A GABRA5 Silent p.L57L 0.09 TCGA-FD-A62P-01 15 43818127 43818127 G C MAP1A Missense_Mutation p.E1486Q 0.12 possibly_damaging(0.474) TCGA-FD-A62P-01 15 43826784 43826784 G A PPIP5K1 3'UTR 0.16 TCGA-FD-A62P-01 15 59373161 59373161 C T RNF111 Missense_Mutation p.H659Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-FD-A62P-01 15 59466419 59466419 C T MYO1E Missense_Mutation p.M690I 0.10 deleterious(0.04) benign(0.08) TCGA-FD-A62P-01 15 62209732 62209732 G C VPS13C Silent p.V2621V 0.17 TCGA-FD-A62P-01 15 72691063 72691063 C G TMEM202 Missense_Mutation p.Q51E 0.19 tolerated(0.07) benign(0.069) TCGA-FD-A62P-01 15 74708318 74708318 C G SEMA7A Missense_Mutation p.Q270H 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-FD-A62P-01 15 75980429 75980429 C T CSPG4 Missense_Mutation p.E993K 0.08 deleterious(0.01) possibly_damaging(0.626) TCGA-FD-A62P-01 15 76135999 76135999 G A UBE2Q2 5'UTR 0.22 TCGA-FD-A62P-01 15 78403582 78403582 G A CIB2 Silent p.L41L 0.15 TCGA-FD-A62P-01 15 79749967 79749967 C G KIAA1024 Missense_Mutation p.S493C 0.08 tolerated_low_confidence(0.09) benign(0.285) TCGA-FD-A62P-01 16 1392923 1392923 A T BAIAP3 Missense_Mutation p.S426C 0.10 tolerated(0.16) possibly_damaging(0.832) TCGA-FD-A62P-01 16 2034728 2034728 C T GFER Intron 0.06 TCGA-FD-A62P-01 16 20559384 20559384 C T ACSM2B Silent p.T366T 0.29 TCGA-FD-A62P-01 16 23224450 23224450 G A SCNN1G Missense_Mutation p.D487N 0.12 deleterious(0) possibly_damaging(0.861) TCGA-FD-A62P-01 16 23713554 23713554 C A ERN2 Silent p.L422L 0.08 TCGA-FD-A62P-01 16 2818246 2818246 G A SRRM2 Missense_Mutation p.E2573K 0.18 probably_damaging(0.991) TCGA-FD-A62P-01 16 31470857 31470857 G A ARMC5 Silent p.A4A 0.44 TCGA-FD-A62P-01 16 3642839 3642839 C G SLX4 Missense_Mutation p.E730Q 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 16 57710154 57710154 G C GPR97 Missense_Mutation p.L83F 0.10 tolerated(0.72) benign(0.071) TCGA-FD-A62P-01 16 57710202 57710202 C G GPR97 Silent p.L99L 0.05 TCGA-FD-A62P-01 16 57786699 57786699 C G KATNB1 Silent p.L238L 0.17 TCGA-FD-A62P-01 16 57786743 57786743 C G KATNB1 Nonsense_Mutation p.S253* 0.24 TCGA-FD-A62P-01 16 67323435 67323435 G T KCTD19 3'UTR 0.10 TCGA-FD-A62P-01 16 67428779 67428779 G A ZDHHC1 Silent p.A416A 0.24 TCGA-FD-A62P-01 16 70605099 70605100 - A SF3B3 Frame_Shift_Ins p.N1172Efs*4 0.11 TCGA-FD-A62P-01 16 70713227 70713227 C G MTSS1L Splice_Site p.X153_splice 0.11 TCGA-FD-A62P-01 16 70713608 70713608 C G MTSS1L Splice_Site p.X128_splice 0.16 TCGA-FD-A62P-01 16 70841857 70841857 C A HYDIN Nonsense_Mutation p.E4998* 0.14 TCGA-FD-A62P-01 16 72120641 72120641 C G TXNL4B Missense_Mutation p.L115F 0.24 deleterious(0) probably_damaging(0.972) TCGA-FD-A62P-01 16 72831611 72831611 G C ZFHX3 Missense_Mutation p.T1657S 0.07 benign(0.066) TCGA-FD-A62P-01 16 89211726 89211726 C T ACSF3 Missense_Mutation p.S473L 0.29 deleterious(0) probably_damaging(0.973) TCGA-FD-A62P-01 16 89347299 89347299 G C ANKRD11 Nonsense_Mutation p.S1884* 0.10 TCGA-FD-A62P-01 16 89347745 89347745 G A ANKRD11 Silent p.L1735L 0.06 TCGA-FD-A62P-01 17 10298491 10298491 C T MYH8 Missense_Mutation p.E1641K 0.11 deleterious(0) possibly_damaging(0.861) TCGA-FD-A62P-01 17 17152248 17152248 C G COPS3 Missense_Mutation p.D377H 0.13 deleterious(0.01) possibly_damaging(0.737) TCGA-FD-A62P-01 17 17699300 17699300 C G RAI1 Missense_Mutation p.S1013C 0.24 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-FD-A62P-01 17 17700285 17700285 C G RAI1 Silent p.L1341L 0.17 TCGA-FD-A62P-01 17 38350103 38350103 G A RAPGEFL1 3'UTR 0.08 TCGA-FD-A62P-01 17 39661438 39661438 A C KRT13 Missense_Mutation p.V122G 0.07 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 17 39928064 39928064 C T JUP Missense_Mutation p.E15K 0.24 tolerated(0.15) possibly_damaging(0.577) TCGA-FD-A62P-01 17 40714573 40714573 C G COASY Intron 0.09 TCGA-FD-A62P-01 17 40865278 40865278 C G EZH1 Missense_Mutation p.E385Q 0.13 tolerated(0.27) probably_damaging(0.986) TCGA-FD-A62P-01 17 4111258 4111258 G A ANKFY1 Silent p.V276V 0.09 TCGA-FD-A62P-01 17 42275474 42275474 C T ATXN7L3 5'Flank 0.22 TCGA-FD-A62P-01 17 4463804 4463804 C T GGT6 Missense_Mutation p.E5K 0.10 deleterious_low_confidence(0.02) benign(0.008) TCGA-FD-A62P-01 17 4463872 4463872 C G GGT6 5'UTR 0.10 TCGA-FD-A62P-01 17 4805138 4805138 G A C17orf107 3'UTR 0.12 TCGA-FD-A62P-01 17 48264429 48264429 C T COL1A1 Missense_Mutation p.G1160S 0.12 unknown(0) TCGA-FD-A62P-01 17 5384695 5384695 C T DERL2 Missense_Mutation p.R83Q 0.11 deleterious(0.04) possibly_damaging(0.822) TCGA-FD-A62P-01 17 56083833 56083833 G A SRSF1 Silent p.L84L 0.18 TCGA-FD-A62P-01 17 61904236 61904236 C T FTSJ3 Silent p.K9K 0.20 TCGA-FD-A62P-01 17 62476476 62476476 C G POLG2 Missense_Mutation p.E408Q 0.14 deleterious(0.01) possibly_damaging(0.823) TCGA-FD-A62P-01 17 62492595 62492595 C G POLG2 Missense_Mutation p.K164N 0.14 deleterious(0.02) benign(0.352) TCGA-FD-A62P-01 17 7214921 7214921 G A EIF5A Missense_Mutation p.E173K 0.12 deleterious(0.01) benign(0.283) TCGA-FD-A62P-01 17 7318914 7318914 C G NLGN2 Silent p.L374L 0.07 TCGA-FD-A62P-01 17 7557411 7557411 C T ATP1B2 Missense_Mutation p.R130C 0.08 tolerated(0.1) probably_damaging(0.917) TCGA-FD-A62P-01 17 76794606 76794606 C T USP36 Missense_Mutation p.E1090K 0.05 deleterious(0.02) benign(0.333) TCGA-FD-A62P-01 17 77808541 77808541 G A CBX4 Silent p.D300D 0.09 TCGA-FD-A62P-01 17 8280908 8280908 C G RPL26 Missense_Mutation p.E138Q 0.08 deleterious(0.05) benign(0.022) TCGA-FD-A62P-01 17 8793359 8793359 C G PIK3R5 Missense_Mutation p.E248Q 0.14 tolerated(0.26) benign(0.022) TCGA-FD-A62P-01 18 13826396 13826396 T C MC5R Missense_Mutation p.L211P 0.15 deleterious(0) probably_damaging(0.953) TCGA-FD-A62P-01 18 14799103 14799103 C T ANKRD30B Missense_Mutation p.S678F 0.09 deleterious(0.04) benign(0.003) TCGA-FD-A62P-01 18 19997162 19997162 G A CTAGE1 Nonsense_Mutation p.Q205* 0.14 TCGA-FD-A62P-01 18 20837244 20837244 C T CABLES1 Silent p.F605F 0.11 TCGA-FD-A62P-01 18 30847245 30847245 C G CCDC178 Missense_Mutation p.R398T 0.15 tolerated(0.16) benign(0.156) TCGA-FD-A62P-01 18 40857231 40857231 T C SYT4 Missense_Mutation p.T6A 0.22 tolerated(0.69) benign(0) TCGA-FD-A62P-01 18 45371652 45371652 G C SMAD2 Intron 0.12 TCGA-FD-A62P-01 18 54361932 54361932 C G WDR7 Missense_Mutation p.S350C 0.12 deleterious(0.03) possibly_damaging(0.778) TCGA-FD-A62P-01 18 64172135 64172135 C T CDH19 Missense_Mutation p.E745K 0.12 deleterious(0.01) possibly_damaging(0.665) TCGA-FD-A62P-01 18 64172297 64172297 C T CDH19 Missense_Mutation p.D691N 0.07 tolerated(0.3) probably_damaging(0.973) TCGA-FD-A62P-01 18 67776925 67776925 G C RTTN Missense_Mutation p.Q1238E 0.18 tolerated(0.07) benign(0.05) TCGA-FD-A62P-01 19 10561326 10561326 C G PDE4A Nonsense_Mutation p.S223* 0.14 TCGA-FD-A62P-01 19 10904436 10904436 G A DNM2 Missense_Mutation p.E345K 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-FD-A62P-01 19 10943784 10943784 C G DNM2 3'Flank 0.12 TCGA-FD-A62P-01 19 11597896 11597896 C G ZNF653 Missense_Mutation p.E417Q 0.22 tolerated(0.35) benign(0.185) TCGA-FD-A62P-01 19 12692330 12692330 G T ZNF490 Missense_Mutation p.H187N 0.08 deleterious(0.05) benign(0.001) TCGA-FD-A62P-01 19 12692380 12692380 G A ZNF490 Missense_Mutation p.S170F 0.06 deleterious(0.04) benign(0.179) TCGA-FD-A62P-01 19 12780892 12780892 G C WDR83 Missense_Mutation p.E69Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-FD-A62P-01 19 13216373 13216373 C T TRMT1 Missense_Mutation p.R544Q 0.16 deleterious(0.02) possibly_damaging(0.579) TCGA-FD-A62P-01 19 14003643 14003643 C T C19orf57 Missense_Mutation p.E117K 0.08 deleterious(0.01) benign(0.004) TCGA-FD-A62P-01 19 14003648 14003648 C G C19orf57 Missense_Mutation p.R115T 0.13 deleterious(0.04) benign(0.052) TCGA-FD-A62P-01 19 15228765 15228765 G C ILVBL Missense_Mutation p.I371M 0.12 deleterious(0) probably_damaging(0.91) TCGA-FD-A62P-01 19 15229984 15229984 G T ILVBL Silent p.V348V 0.12 TCGA-FD-A62P-01 19 15483851 15483851 C T AKAP8 Nonsense_Mutation p.W224* 0.19 TCGA-FD-A62P-01 19 17531136 17531136 C G MVB12A Silent p.V35V 0.14 TCGA-FD-A62P-01 19 18652666 18652666 C G FKBP8 Missense_Mutation p.E39Q 0.16 deleterious_low_confidence(0.01) benign(0.048) TCGA-FD-A62P-01 19 18961517 18961517 G A UPF1 Missense_Mutation p.S217N 0.16 tolerated(0.92) benign(0.001) TCGA-FD-A62P-01 19 19338200 19338200 G A NCAN Missense_Mutation p.E591K 0.07 tolerated(0.79) benign(0.001) TCGA-FD-A62P-01 19 19654824 19654824 C T CILP2 Silent p.F490F 0.06 TCGA-FD-A62P-01 19 19654834 19654834 C G CILP2 Missense_Mutation p.L494V 0.14 tolerated(0.17) benign(0.37) TCGA-FD-A62P-01 19 22155350 22155350 C T ZNF208 Missense_Mutation p.G829E 0.19 deleterious(0.05) unknown(0) TCGA-FD-A62P-01 19 2251759 2251759 C T AMH Nonsense_Mutation p.Q496* 0.12 TCGA-FD-A62P-01 19 2476226 2476226 C G GADD45B 5'UTR 0.18 TCGA-FD-A62P-01 19 35251408 35251408 C T ZNF599 Missense_Mutation p.E100K 0.08 tolerated(0.17) benign(0.002) TCGA-FD-A62P-01 19 35758054 35758054 C T LSR Missense_Mutation p.S444F 0.24 tolerated(0.82) probably_damaging(0.998) TCGA-FD-A62P-01 19 35758056 35758056 C T LSR Missense_Mutation p.R445W 0.24 deleterious(0) possibly_damaging(0.8) TCGA-FD-A62P-01 19 371297 371297 G T THEG Silent p.R221R 0.05 TCGA-FD-A62P-01 19 37975150 37975150 A G ZNF570 Missense_Mutation p.K209R 0.10 tolerated(0.07) benign(0.004) TCGA-FD-A62P-01 19 39399273 39399273 G A NFKBIB Intron 0.39 TCGA-FD-A62P-01 19 40880510 40880510 G A PLD3 Silent p.E334E 0.12 TCGA-FD-A62P-01 19 41383191 41383191 C A CYP2A7 Silent p.V355V 0.08 TCGA-FD-A62P-01 19 41778080 41778080 G T HNRNPUL1 Missense_Mutation p.R171L 0.23 deleterious(0.01) unknown(0) TCGA-FD-A62P-01 19 42744422 42744422 C T GSK3A Intron 0.18 TCGA-FD-A62P-01 19 42819589 42819589 G C TMEM145 Missense_Mutation p.E215Q 0.30 tolerated(0.44) benign(0.054) TCGA-FD-A62P-01 19 42821987 42821987 G C TMEM145 Missense_Mutation p.E343Q 0.26 deleterious(0.02) benign(0.422) TCGA-FD-A62P-01 19 43371381 43371381 C T PSG1 3'UTR 0.17 TCGA-FD-A62P-01 19 43411121 43411121 G A PSG6 Missense_Mutation p.S398L 0.16 tolerated(0.09) possibly_damaging(0.794) TCGA-FD-A62P-01 19 4359188 4359188 C T MPND Missense_Mutation p.S422F 0.14 deleterious(0.05) possibly_damaging(0.707) TCGA-FD-A62P-01 19 4361699 4361699 C T SH3GL1 Silent p.L335L 0.13 TCGA-FD-A62P-01 19 4363777 4363777 C T SH3GL1 Silent p.E188E 0.15 TCGA-FD-A62P-01 19 44770351 44770351 G T ZNF233 Nonsense_Mutation p.E6* 0.18 TCGA-FD-A62P-01 19 46174547 46174547 C G GIPR Silent p.L59L 0.16 TCGA-FD-A62P-01 19 4659970 4659970 C G C19orf10 Missense_Mutation p.E139Q 0.05 deleterious(0.02) possibly_damaging(0.716) TCGA-FD-A62P-01 19 48946536 48946536 C T GRIN2D Missense_Mutation p.S1118L 0.32 tolerated_low_confidence(0.14) unknown(0) TCGA-FD-A62P-01 19 49564582 49564582 C G NTF4 3'UTR 0.33 TCGA-FD-A62P-01 19 49638093 49638093 G C PPFIA3 Missense_Mutation p.E481Q 0.08 deleterious(0.04) possibly_damaging(0.776) TCGA-FD-A62P-01 19 53645450 53645450 C G ZNF347 Missense_Mutation p.E212Q 0.18 tolerated(0.06) benign(0.103) TCGA-FD-A62P-01 19 56733280 56733280 T C ZSCAN5A Silent p.Q385Q 0.08 TCGA-FD-A62P-01 19 58049666 58049666 C G ZNF549 Missense_Mutation p.L432V 0.05 deleterious(0) probably_damaging(0.978) TCGA-FD-A62P-01 19 58213977 58213977 C T ZNF154 Missense_Mutation p.E114K 0.10 tolerated(0.23) benign(0.01) TCGA-FD-A62P-01 19 58862931 58862931 C T A1BG Missense_Mutation p.G246R 0.16 tolerated(0.11) possibly_damaging(0.777) TCGA-FD-A62P-01 19 7506624 7506624 C G ARHGEF18 Missense_Mutation p.P210A 0.19 tolerated(0.11) benign(0) TCGA-FD-A62P-01 19 7809845 7809845 G C CD209 Missense_Mutation p.I294M 0.07 deleterious(0) probably_damaging(0.995) TCGA-FD-A62P-01 19 7812252 7812252 C G CD209 Splice_Site p.X16_splice 0.08 TCGA-FD-A62P-01 19 8159441 8159441 C G FBN3 Missense_Mutation p.E1932Q 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A62P-01 19 9577964 9577964 G A ZNF560 Silent p.F553F 0.20 TCGA-FD-A62P-01 1 110466686 110466686 T C CSF1 Silent p.H481H 0.06 TCGA-FD-A62P-01 1 11147610 11147610 C G EXOSC10 Silent p.L328L 0.14 TCGA-FD-A62P-01 1 111506249 111506249 G C LRIF1 Missense_Mutation p.S21W 0.15 deleterious(0) probably_damaging(0.931) TCGA-FD-A62P-01 1 111690493 111690493 G T CEPT1 Nonsense_Mutation p.E53* 0.27 TCGA-FD-A62P-01 1 114280776 114280776 G C PHTF1 Missense_Mutation p.S96C 0.26 tolerated(0.06) probably_damaging(1) TCGA-FD-A62P-01 1 1263165 1263165 C G GLTPD1 3'UTR 0.21 TCGA-FD-A62P-01 1 145115788 145115788 G T SEC22B RNA 0.11 TCGA-FD-A62P-01 1 145507691 145507691 G A RBM8A Missense_Mutation p.E9K 0.20 tolerated(0.23) benign(0.018) TCGA-FD-A62P-01 1 145507706 145507706 G C RBM8A Missense_Mutation p.D14H 0.22 deleterious(0) probably_damaging(0.945) TCGA-FD-A62P-01 1 153949464 153949464 C G JTB Missense_Mutation p.E37Q 0.05 tolerated(0.06) benign(0.249) TCGA-FD-A62P-01 1 155234556 155234556 C G CLK2 Missense_Mutation p.E314Q 0.29 deleterious(0.05) possibly_damaging(0.778) TCGA-FD-A62P-01 1 155237823 155237823 C G CLK2 Missense_Mutation p.E216Q 0.24 tolerated(0.21) benign(0.037) TCGA-FD-A62P-01 1 155247568 155247568 C G HCN3 Missense_Mutation p.R63G 0.32 deleterious(0) probably_damaging(0.942) TCGA-FD-A62P-01 1 155296408 155296408 C G RUSC1 Missense_Mutation p.F633L 0.24 tolerated(0.61) benign(0.058) TCGA-FD-A62P-01 1 160143937 160143937 G A ATP1A4 Silent p.L676L 0.07 TCGA-FD-A62P-01 1 160187420 160187420 C A DCAF8 Nonsense_Mutation p.E740* 0.07 TCGA-FD-A62P-01 1 160914961 160914961 G A ITLN2 Missense_Mutation p.T316M 0.06 deleterious(0.04) benign(0.053) TCGA-FD-A62P-01 1 161134643 161134643 C T USP21 Missense_Mutation p.A468V 0.04 tolerated(0.19) benign(0.138) TCGA-FD-A62P-01 1 16375531 16375531 G A CLCNKB Intron 0.30 TCGA-FD-A62P-01 1 168054931 168054931 G A GPR161 Silent p.I496I 0.05 TCGA-FD-A62P-01 1 170695452 170695452 G C PRRX1 Missense_Mutation p.G170A 0.24 tolerated(0.35) probably_damaging(0.987) TCGA-FD-A62P-01 1 171310772 171310772 G C FMO4 Missense_Mutation p.D491H 0.31 deleterious(0.02) benign(0.395) TCGA-FD-A62P-01 1 184476748 184476748 G C C1orf21 Missense_Mutation p.E41Q 0.46 deleterious(0.03) probably_damaging(0.969) TCGA-FD-A62P-01 1 18554479 18554479 G A IGSF21 Missense_Mutation p.R53H 0.09 deleterious(0.01) possibly_damaging(0.873) TCGA-FD-A62P-01 1 190068162 190068162 C T BRINP3 Silent p.P429P 0.39 TCGA-FD-A62P-01 1 19420619 19420619 C T UBR4 Silent p.L4587L 0.16 TCGA-FD-A62P-01 1 208224674 208224674 C T PLXNA2 Missense_Mutation p.D1030N 0.07 tolerated(1) benign(0.038) TCGA-FD-A62P-01 1 208390990 208390990 G A PLXNA2 Missense_Mutation p.S93F 0.47 deleterious(0.02) possibly_damaging(0.567) TCGA-FD-A62P-01 1 208391159 208391159 G A PLXNA2 Nonsense_Mutation p.Q37* 0.39 TCGA-FD-A62P-01 1 21900165 21900165 C G ALPL Missense_Mutation p.F290L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A62P-01 1 22141118 22141118 G A LDLRAD2 Missense_Mutation p.D105N 0.45 deleterious(0.01) possibly_damaging(0.652) TCGA-FD-A62P-01 1 222825573 222825573 C T MIA3 Nonsense_Mutation p.Q1329* 0.20 TCGA-FD-A62P-01 1 224033437 224033437 G A TP53BP2 5'UTR 0.36 TCGA-FD-A62P-01 1 22927832 22927832 C T EPHA8 Silent p.L923L 0.20 TCGA-FD-A62P-01 1 231473425 231473425 C T EXOC8 Missense_Mutation p.E23K 0.22 deleterious(0.05) benign(0.053) TCGA-FD-A62P-01 1 2409944 2409944 G A PLCH2 Missense_Mutation p.G25R 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 1 241676987 241676987 G C FH Missense_Mutation p.I98M 0.25 deleterious(0.01) benign(0.322) TCGA-FD-A62P-01 1 241761052 241761052 C T OPN3 Missense_Mutation p.R314K 0.23 tolerated(0.64) benign(0.014) TCGA-FD-A62P-01 1 27058009 27058009 C G ARID1A Missense_Mutation p.L573V 0.12 benign(0.002) TCGA-FD-A62P-01 1 27097665 27097665 C G ARID1A Nonsense_Mutation p.S1085* 0.42 TCGA-FD-A62P-01 1 27941026 27941026 G T FGR Silent p.I388I 0.09 TCGA-FD-A62P-01 1 35250484 35250484 G A GJB3 Missense_Mutation p.E41K 0.08 tolerated(0.06) probably_damaging(1) TCGA-FD-A62P-01 1 36306987 36306987 G A AGO4 Missense_Mutation p.R649Q 0.11 tolerated(0.05) possibly_damaging(0.595) TCGA-FD-A62P-01 1 3731967 3731967 C T CEP104 Silent p.%3D 0.15 TCGA-FD-A62P-01 1 38287958 38287958 C G MTF1 Missense_Mutation p.Q534H 0.09 tolerated(0.18) possibly_damaging(0.739) TCGA-FD-A62P-01 1 4832549 4832549 C T AJAP1 Missense_Mutation p.T376M 0.11 deleterious(0) possibly_damaging(0.897) TCGA-FD-A62P-01 1 54666259 54666259 G A MRPL37 Missense_Mutation p.E115K 0.12 deleterious(0.03) benign(0.179) TCGA-FD-A62P-01 1 55638157 55638157 C T USP24 Missense_Mutation p.E199K 0.19 deleterious(0) probably_damaging(0.996) TCGA-FD-A62P-01 1 67786019 67786019 G C IL12RB2 5'UTR 0.09 TCGA-FD-A62P-01 1 68896793 68896793 C G RPE65 Missense_Mutation p.E469Q 0.11 deleterious(0) possibly_damaging(0.659) TCGA-FD-A62P-01 1 68954630 68954630 C T DEPDC1 Missense_Mutation p.E187K 0.07 tolerated(0.06) benign(0.03) TCGA-FD-A62P-01 1 78958855 78958855 C T PTGFR Missense_Mutation p.H143Y 0.11 deleterious(0) possibly_damaging(0.863) TCGA-FD-A62P-01 1 84815348 84815348 G C SAMD13 Missense_Mutation p.R81T 0.09 deleterious(0) possibly_damaging(0.723) TCGA-FD-A62P-01 1 86173604 86173604 C G ZNHIT6 Missense_Mutation p.D122H 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.546) TCGA-FD-A62P-01 1 94953487 94953487 C G ABCD3 Missense_Mutation p.Q369E 0.14 tolerated(1) benign(0.002) TCGA-FD-A62P-01 20 1286183 1286183 G C SNPH Missense_Mutation p.D324H 0.06 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A62P-01 20 18407713 18407713 C G DZANK1 Missense_Mutation p.E318Q 0.11 tolerated(0.37) benign(0.022) TCGA-FD-A62P-01 20 2315857 2315857 G A TGM3 Missense_Mutation p.D580N 0.13 tolerated(0.6) benign(0.002) TCGA-FD-A62P-01 20 31813000 31813000 G A BPIFA3 Silent p.V161V 0.21 TCGA-FD-A62P-01 20 33059275 33059275 G C ITCH Missense_Mutation p.K549N 0.09 deleterious(0) possibly_damaging(0.575) TCGA-FD-A62P-01 20 33059311 33059311 C G ITCH Silent p.S561S 0.15 TCGA-FD-A62P-01 20 35635874 35635874 T C RBL1 Missense_Mutation p.I937M 0.09 deleterious(0.03) possibly_damaging(0.781) TCGA-FD-A62P-01 20 43936860 43936860 G C RBPJL Missense_Mutation p.D34H 0.24 deleterious_low_confidence(0.04) benign(0.027) TCGA-FD-A62P-01 20 44596402 44596402 C T ZNF335 Missense_Mutation p.R262H 0.19 deleterious(0.02) probably_damaging(0.91) TCGA-FD-A62P-01 20 46365657 46365657 G A SULF2 Missense_Mutation p.R69C 0.35 deleterious(0) probably_damaging(0.977) TCGA-FD-A62P-01 20 47259022 47259022 C T PREX1 Missense_Mutation p.E1203K 0.12 deleterious_low_confidence(0) possibly_damaging(0.488) TCGA-FD-A62P-01 20 480551 480551 C G CSNK2A1 Missense_Mutation p.E81Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-FD-A62P-01 20 60912924 60912924 G A LAMA5 Silent p.P654P 0.30 TCGA-FD-A62P-01 20 62370243 62370243 C A LIME1 Missense_Mutation p.S293Y 0.32 tolerated_low_confidence(0.23) unknown(0) TCGA-FD-A62P-01 21 10863052 10863052 G A IGHV1OR21-1 Silent p.V116V 0.05 TCGA-FD-A62P-01 21 22881329 22881329 C T NCAM2 Silent p.G745G 0.06 TCGA-FD-A62P-01 21 35190667 35190667 G A ITSN1 Missense_Mutation p.V942I 0.08 deleterious(0.02) probably_damaging(0.927) TCGA-FD-A62P-01 21 40186315 40186315 G C ETS2 Missense_Mutation p.K101N 0.10 tolerated(0.26) benign(0.004) TCGA-FD-A62P-01 21 43221265 43221265 G C PRDM15 3'Flank 0.33 TCGA-FD-A62P-01 21 44190896 44190896 C T PDE9A Silent p.D558D 0.11 TCGA-FD-A62P-01 21 45152330 45152330 G A PDXK Intron 0.09 TCGA-FD-A62P-01 21 46057911 46057911 C T KRTAP10-10 Missense_Mutation p.L193F 0.18 deleterious(0.01) possibly_damaging(0.585) TCGA-FD-A62P-01 21 47549235 47549235 G C COL6A2 Intron 0.14 TCGA-FD-A62P-01 22 19443286 19443286 G C UFD1L Missense_Mutation p.F228L 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-FD-A62P-01 22 38308444 38308444 C T MICALL1 Silent p.L94L 0.17 TCGA-FD-A62P-01 22 50279108 50279108 C G ZBED4 Missense_Mutation p.L600V 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-FD-A62P-01 22 50279412 50279412 C G ZBED4 Missense_Mutation p.S701C 0.17 deleterious(0.02) benign(0.078) TCGA-FD-A62P-01 2 10101464 10101464 C G GRHL1 Missense_Mutation p.L190V 0.18 tolerated(0.43) benign(0.025) TCGA-FD-A62P-01 2 101594223 101594223 C T NPAS2 Nonsense_Mutation p.Q482* 0.07 TCGA-FD-A62P-01 2 108489209 108489209 T G RGPD4 Missense_Mutation p.S1583R 0.15 tolerated(0.15) benign(0.01) TCGA-FD-A62P-01 2 10904463 10904463 T C ATP6V1C2 Missense_Mutation p.L97S 0.07 deleterious(0) probably_damaging(0.989) TCGA-FD-A62P-01 2 128896402 128896402 T C UGGT1 Silent p.Y565Y 0.15 TCGA-FD-A62P-01 2 135616890 135616890 G A ACMSD Nonsense_Mutation p.W54* 0.11 TCGA-FD-A62P-01 2 136396630 136396630 C G R3HDM1 Nonsense_Mutation p.S386* 0.24 TCGA-FD-A62P-01 2 136587185 136587185 C T LCT Missense_Mutation p.R261Q 0.06 tolerated(0.57) benign(0.018) TCGA-FD-A62P-01 2 152739812 152739812 G A CACNB4 Nonsense_Mutation p.R74* 0.17 TCGA-FD-A62P-01 2 1651966 1651966 C T PXDN Missense_Mutation p.E1196K 0.14 tolerated(0.11) benign(0.035) TCGA-FD-A62P-01 2 166188012 166188012 C G SCN2A Silent p.L774L 0.12 TCGA-FD-A62P-01 2 167273485 167273485 C G SCN7A Missense_Mutation p.R1049T 0.21 deleterious(0.04) benign(0.005) TCGA-FD-A62P-01 2 169764194 169764194 C T G6PC2 Missense_Mutation p.L225F 0.17 deleterious(0.02) benign(0.267) TCGA-FD-A62P-01 2 170557515 170557515 A C PHOSPHO2 Missense_Mutation p.T12P 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 2 172586293 172586293 G C DYNC1I2 Missense_Mutation p.G489A 0.30 deleterious(0.02) possibly_damaging(0.74) TCGA-FD-A62P-01 2 173916422 173916422 G A RAPGEF4 Missense_Mutation p.R988Q 0.07 tolerated(0.63) possibly_damaging(0.723) TCGA-FD-A62P-01 2 179594395 179594395 C T TTN Silent p.V6195V 0.08 TCGA-FD-A62P-01 2 179594406 179594406 C T TTN Missense_Mutation p.E6192K 0.07 TCGA-FD-A62P-01 2 179614579 179614579 G A TTN Intron 0.09 TCGA-FD-A62P-01 2 197298033 197298033 C T HECW2 Missense_Mutation p.E39K 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.473) TCGA-FD-A62P-01 2 198265453 198265453 C T SF3B1 Missense_Mutation p.E902K 0.24 deleterious(0.01) probably_damaging(0.926) TCGA-FD-A62P-01 2 214972961 214972961 C T SPAG16 Silent p.I523I 0.09 TCGA-FD-A62P-01 2 220022268 220022268 G A NHEJ1 Silent p.L106L 0.12 TCGA-FD-A62P-01 2 223161789 223161789 G A PAX3 Missense_Mutation p.R77C 0.09 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A62P-01 2 224840470 224840470 T C SERPINE2 3'UTR 0.33 TCGA-FD-A62P-01 2 230271991 230271991 G T DNER Missense_Mutation p.S560R 0.08 tolerated(0.08) possibly_damaging(0.551) TCGA-FD-A62P-01 2 241656726 241656726 G A KIF1A 3'UTR 0.26 TCGA-FD-A62P-01 2 25978935 25978935 C G ASXL2 Missense_Mutation p.E330Q 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 2 27592392 27592392 C G EIF2B4 Missense_Mutation p.E55Q 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-FD-A62P-01 2 27805479 27805479 C G C2orf16 3'UTR 0.20 TCGA-FD-A62P-01 2 37362656 37362656 C T EIF2AK2 Missense_Mutation p.M252I 0.13 tolerated(0.44) benign(0.001) TCGA-FD-A62P-01 2 39664075 39664075 C T MAP4K3 Silent p.L18L 0.26 TCGA-FD-A62P-01 2 42990452 42990452 G A OXER1 Missense_Mutation p.P290S 0.24 tolerated(0.06) possibly_damaging(0.643) TCGA-FD-A62P-01 2 44559666 44559666 C T PREPL Missense_Mutation p.E429K 0.18 tolerated(0.18) benign(0.017) TCGA-FD-A62P-01 2 50318616 50318616 C T NRXN1 Missense_Mutation p.G1228E 0.08 tolerated(0.2) probably_damaging(0.933) TCGA-FD-A62P-01 2 65298910 65298910 C T CEP68 Missense_Mutation p.S227F 0.11 deleterious(0) probably_damaging(0.989) TCGA-FD-A62P-01 2 65299520 65299520 C A CEP68 Missense_Mutation p.H430Q 0.18 tolerated(0.41) benign(0.027) TCGA-FD-A62P-01 2 73518548 73518548 G A EGR4 3'UTR 0.07 TCGA-FD-A62P-01 2 79385896 79385896 C T REG3A Splice_Site p.X26_splice 0.12 TCGA-FD-A62P-01 2 80101245 80101245 G A CTNNA2 Missense_Mutation p.R210Q 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 2 85827499 85827499 G A TMEM150A Silent p.F79F 0.19 TCGA-FD-A62P-01 2 85892789 85892789 G A SFTPB Silent p.D186D 0.06 TCGA-FD-A62P-01 2 86669288 86669288 G A KDM3A Missense_Mutation p.E40K 0.12 tolerated(0.5) benign(0.247) TCGA-FD-A62P-01 2 99439361 99439361 C T KIAA1211L Missense_Mutation p.E459K 0.11 tolerated(0.08) possibly_damaging(0.486) TCGA-FD-A62P-01 3 121400628 121400628 G T GOLGB1 Missense_Mutation p.Q2927K 0.11 probably_damaging(0.937) TCGA-FD-A62P-01 3 121438570 121438570 C G GOLGB1 Missense_Mutation p.E232Q 0.09 possibly_damaging(0.838) TCGA-FD-A62P-01 3 122351063 122351063 G C PARP15 Missense_Mutation p.E523D 0.18 deleterious(0.01) benign(0.034) TCGA-FD-A62P-01 3 122404086 122404086 G C PARP14 Missense_Mutation p.G81A 0.20 deleterious(0.01) possibly_damaging(0.871) TCGA-FD-A62P-01 3 123452851 123452851 G A MYLK Missense_Mutation p.T331M 0.10 tolerated(0.06) probably_damaging(0.971) TCGA-FD-A62P-01 3 12545138 12545138 T A TSEN2 Missense_Mutation p.I229N 0.21 tolerated(0.13) benign(0.011) TCGA-FD-A62P-01 3 12573100 12573100 C G TSEN2 Missense_Mutation p.S427C 0.09 deleterious(0.04) benign(0.209) TCGA-FD-A62P-01 3 129275000 129275000 C T PLXND1 3'UTR 0.18 TCGA-FD-A62P-01 3 133547578 133547578 G C RAB6B 3'UTR 0.12 TCGA-FD-A62P-01 3 151542617 151542617 C A AADAC Missense_Mutation p.Q200K 0.11 deleterious(0) probably_damaging(0.993) TCGA-FD-A62P-01 3 151545594 151545594 C G AADAC Missense_Mutation p.F278L 0.08 tolerated(0.25) benign(0.02) TCGA-FD-A62P-01 3 15475904 15475904 C T EAF1 Missense_Mutation p.R129C 0.06 deleterious(0) possibly_damaging(0.877) TCGA-FD-A62P-01 3 164727117 164727117 C G SI Missense_Mutation p.E1377Q 0.13 tolerated(0.06) probably_damaging(0.988) TCGA-FD-A62P-01 3 164907374 164907374 C G SLITRK3 Silent p.L415L 0.11 TCGA-FD-A62P-01 3 186917568 186917568 G A RTP1 Missense_Mutation p.E168K 0.15 tolerated(0.15) possibly_damaging(0.547) TCGA-FD-A62P-01 3 190039779 190039779 G C CLDN1 Missense_Mutation p.L73V 0.13 deleterious(0) possibly_damaging(0.721) TCGA-FD-A62P-01 3 19575509 19575509 C T KCNH8 Missense_Mutation p.S1081F 0.13 deleterious_low_confidence(0) benign(0.122) TCGA-FD-A62P-01 3 30875399 30875399 G T GADL1 Missense_Mutation p.H332Q 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 3 37336566 37336566 C T GOLGA4 Nonsense_Mutation p.Q249* 0.09 TCGA-FD-A62P-01 3 44612104 44612104 G A ZKSCAN7 Missense_Mutation p.G501E 0.07 deleterious(0.02) possibly_damaging(0.743) TCGA-FD-A62P-01 3 44685407 44685407 C A ZNF197 Missense_Mutation p.P929T 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 3 45988561 45988561 G A CXCR6 Missense_Mutation p.M196I 0.10 tolerated(0.18) benign(0.113) TCGA-FD-A62P-01 3 49412973 49412973 C G RHOA Missense_Mutation p.G17A 0.10 deleterious(0) possibly_damaging(0.591) TCGA-FD-A62P-01 3 52088158 52088158 G C DUSP7 Silent p.P250P 0.08 TCGA-FD-A62P-01 3 56026125 56026125 C A ERC2 Nonsense_Mutation p.E739* 0.11 TCGA-FD-A62P-01 3 57561323 57561323 G T ARF4 Silent p.I136I 0.12 TCGA-FD-A62P-01 3 58134462 58134462 A G FLNB Missense_Mutation p.I2023V 0.15 tolerated(0.46) probably_damaging(0.982) TCGA-FD-A62P-01 3 62535768 62535768 G C CADPS Missense_Mutation p.F592L 0.09 deleterious(0) benign(0.269) TCGA-FD-A62P-01 3 8590409 8590409 G A LMCD1 Silent p.L181L 0.07 TCGA-FD-A62P-01 3 93779777 93779777 G A DHFRL1 3'UTR 0.19 TCGA-FD-A62P-01 3 9799137 9799137 G A CAMK1 3'UTR 0.35 TCGA-FD-A62P-01 3 98311803 98311803 C T CPOX Silent p.E182E 0.16 TCGA-FD-A62P-01 3 9987997 9987997 G A PRRT3 Missense_Mutation p.R954W 0.18 tolerated(0.08) benign(0.011) TCGA-FD-A62P-01 4 103718512 103718512 G A UBE2D3 3'Flank 0.05 TCGA-FD-A62P-01 4 114278286 114278286 G C ANK2 Missense_Mutation p.D2838H 0.09 benign(0.012) TCGA-FD-A62P-01 4 128804655 128804655 G A PLK4 Missense_Mutation p.G95E 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 4 140187878 140187878 C G MGARP Missense_Mutation p.E200Q 0.09 tolerated(0.05) possibly_damaging(0.593) TCGA-FD-A62P-01 4 170634240 170634240 G T CLCN3 Missense_Mutation p.R720S 0.19 tolerated(0.1) probably_damaging(0.97) TCGA-FD-A62P-01 4 185599491 185599491 C G PRIMPOL Nonsense_Mutation p.S317* 0.15 TCGA-FD-A62P-01 4 1955009 1955009 C G WHSC1 Intron 0.27 TCGA-FD-A62P-01 4 2306648 2306648 G A ZFYVE28 Silent p.L473L 0.10 TCGA-FD-A62P-01 4 41265302 41265302 G A UCHL1 Missense_Mutation p.E174K 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 4 56883854 56883854 C T CEP135 Missense_Mutation p.S948L 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-FD-A62P-01 4 62801712 62801712 G A LPHN3 Missense_Mutation p.G722R 0.27 tolerated(0.12) possibly_damaging(0.461) TCGA-FD-A62P-01 4 71508990 71508990 G A ENAM Missense_Mutation p.R616K 0.08 tolerated(0.31) benign(0.347) TCGA-FD-A62P-01 4 77134780 77134780 G C SCARB2 5'UTR 0.21 TCGA-FD-A62P-01 5 129521460 129521460 C T CHSY3 Silent p.V875V 0.20 TCGA-FD-A62P-01 5 140209056 140209056 C A PCDHA6 Nonsense_Mutation p.Y460* 0.18 TCGA-FD-A62P-01 5 140553673 140553673 C T PCDHB7 Silent p.I419I 0.13 TCGA-FD-A62P-01 5 140754735 140754735 C T PCDHGA6 Missense_Mutation p.P362L 0.10 tolerated_low_confidence(0.08) benign(0.029) TCGA-FD-A62P-01 5 140762898 140762898 G T PCDHGA7 Missense_Mutation p.E144D 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A62P-01 5 145648799 145648799 G T RBM27 Missense_Mutation p.R827S 0.06 deleterious(0) probably_damaging(0.996) TCGA-FD-A62P-01 5 146795377 146795377 C G DPYSL3 Missense_Mutation p.E239Q 0.12 tolerated(0.18) benign(0.007) TCGA-FD-A62P-01 5 148637877 148637877 C T ABLIM3 Silent p.F654F 0.09 TCGA-FD-A62P-01 5 150578617 150578617 C G CCDC69 Missense_Mutation p.R87P 0.09 tolerated(0.06) benign(0.384) TCGA-FD-A62P-01 5 150696437 150696437 C T SLC36A2 Missense_Mutation p.E465K 0.16 deleterious(0) possibly_damaging(0.734) TCGA-FD-A62P-01 5 153372427 153372427 G A FAM114A2 3'UTR 0.12 TCGA-FD-A62P-01 5 156590388 156590388 C G FAM71B Missense_Mutation p.M296I 0.17 tolerated(0.18) benign(0) TCGA-FD-A62P-01 5 157078551 157078551 C G SOX30 Missense_Mutation p.R179P 0.19 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FD-A62P-01 5 176860562 176860562 C T GRK6 Missense_Mutation p.T208I 0.06 deleterious(0) probably_damaging(0.993) TCGA-FD-A62P-01 5 176885268 176885268 C T DBN1 Missense_Mutation p.A525T 0.17 tolerated(0.09) benign(0.023) TCGA-FD-A62P-01 5 21755873 21755873 A G CDH12 Missense_Mutation p.I571T 0.12 deleterious(0) possibly_damaging(0.824) TCGA-FD-A62P-01 5 37049264 37049264 C T NIPBL Missense_Mutation p.S2272L 0.11 deleterious(0) probably_damaging(0.996) TCGA-FD-A62P-01 5 41850134 41850134 C G OXCT1 Missense_Mutation p.E188Q 0.09 deleterious(0.02) benign(0.189) TCGA-FD-A62P-01 5 74655086 74655086 A T HMGCR Missense_Mutation p.N750I 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 5 76506746 76506746 G A PDE8B 5'UTR 0.33 TCGA-FD-A62P-01 5 7895918 7895918 G T MTRR Silent p.V570V 0.06 TCGA-FD-A62P-01 6 112035563 112035563 T C FYN Missense_Mutation p.I111V 0.11 tolerated(0.32) probably_damaging(0.986) TCGA-FD-A62P-01 6 121562696 121562696 G A TBC1D32 Silent p.V720V 0.11 TCGA-FD-A62P-01 6 135726115 135726115 C A AHI1 Nonsense_Mutation p.E988* 0.13 TCGA-FD-A62P-01 6 136693721 136693721 G C MAP7 Missense_Mutation p.S287C 0.10 tolerated(0.49) benign(0.037) TCGA-FD-A62P-01 6 136980397 136980397 G A MAP3K5 Nonsense_Mutation p.Q496* 0.09 TCGA-FD-A62P-01 6 149285584 149285584 G C UST Missense_Mutation p.R189T 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A62P-01 6 149285641 149285641 G C UST Missense_Mutation p.R208T 0.08 tolerated(0.14) benign(0.229) TCGA-FD-A62P-01 6 152631083 152631083 G A SYNE1 Missense_Mutation p.R5697W 0.14 probably_damaging(0.999) TCGA-FD-A62P-01 6 24667474 24667474 G A ACOT13 5'UTR 0.12 TCGA-FD-A62P-01 6 25279882 25279882 C T LRRC16A 5'UTR 0.16 TCGA-FD-A62P-01 6 29638643 29638643 C T MOG Intron 0.23 TCGA-FD-A62P-01 6 31084612 31084612 G A CDSN Silent p.H260H 0.06 TCGA-FD-A62P-01 6 31995167 31995167 G A C4B Missense_Mutation p.R916Q 0.19 tolerated(0.32) benign(0.024) TCGA-FD-A62P-01 6 33638590 33638590 G C ITPR3 Missense_Mutation p.E862Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 6 35466028 35466028 G A TULP1 3'UTR 0.20 TCGA-FD-A62P-01 6 35923012 35923012 G C SLC26A8 Missense_Mutation p.L717V 0.16 tolerated(0.12) benign(0.119) TCGA-FD-A62P-01 6 56483338 56483338 C G DST Intron 0.23 TCGA-FD-A62P-01 6 56880102 56880102 C T BEND6 Missense_Mutation p.S157L 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.879) TCGA-FD-A62P-01 6 7247375 7247375 G C RREB1 Missense_Mutation p.K1564N 0.11 deleterious(0) probably_damaging(0.994) TCGA-FD-A62P-01 6 74073372 74073372 C T KHDC3L Missense_Mutation p.S148L 0.15 deleterious(0.03) benign(0.027) TCGA-FD-A62P-01 6 74524817 74524817 C G CD109 Silent p.L1294L 0.10 TCGA-FD-A62P-01 7 100007089 100007089 G A ZCWPW1 Missense_Mutation p.S277L 0.08 deleterious(0.01) probably_damaging(0.964) TCGA-FD-A62P-01 7 100280339 100280339 C T GIGYF1 Nonsense_Mutation p.W825* 0.07 TCGA-FD-A62P-01 7 100609832 100609832 C G MUC3A Missense_Mutation p.F824L 0.07 tolerated(0.16) possibly_damaging(0.525) TCGA-FD-A62P-01 7 103183311 103183311 C G RELN Missense_Mutation p.D2180H 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A62P-01 7 103230092 103230092 C T RELN Missense_Mutation p.E1366K 0.15 tolerated(0.19) possibly_damaging(0.491) TCGA-FD-A62P-01 7 107872810 107872810 G A NRCAM Silent p.R129R 0.38 TCGA-FD-A62P-01 7 116849931 116849931 C G ST7 Missense_Mutation p.L449V 0.10 deleterious(0) probably_damaging(0.997) TCGA-FD-A62P-01 7 129680855 129680855 G C ZC3HC1 Silent p.L115L 0.09 TCGA-FD-A62P-01 7 131872353 131872353 G C PLXNA4 Nonsense_Mutation p.S957* 0.29 TCGA-FD-A62P-01 7 135291576 135291576 C G NUP205 Missense_Mutation p.L995V 0.13 deleterious(0) probably_damaging(0.915) TCGA-FD-A62P-01 7 135291638 135291638 C G NUP205 Silent p.V1015V 0.07 TCGA-FD-A62P-01 7 142364582 142364582 G C TRBV24-1 Missense_Mutation p.D73H 0.06 tolerated(0.36) benign(0.119) TCGA-FD-A62P-01 7 142423221 142423221 C - TRBV27 Frame_Shift_Del p.Q4Sfs*11 0.28 TCGA-FD-A62P-01 7 143885350 143885350 C G ARHGEF35 Missense_Mutation p.D43H 0.27 deleterious(0.02) possibly_damaging(0.753) TCGA-FD-A62P-01 7 150837088 150837088 C G AGAP3 Silent p.L563L 0.12 TCGA-FD-A62P-01 7 19015519 19015519 C T HDAC9 Missense_Mutation p.S1038F 0.25 deleterious(0) probably_damaging(0.944) TCGA-FD-A62P-01 7 20683155 20683155 C T ABCB5 Missense_Mutation p.S193L 0.13 tolerated(0.64) benign(0.002) TCGA-FD-A62P-01 7 2613111 2613111 G T IQCE Nonsense_Mutation p.E152* 0.26 TCGA-FD-A62P-01 7 44747549 44747549 G C OGDH Missense_Mutation p.R1008P 0.13 tolerated(0.08) possibly_damaging(0.693) TCGA-FD-A62P-01 7 73008309 73008309 G C MLXIPL Silent p.V815V 0.07 TCGA-FD-A62P-01 7 84671602 84671602 C G SEMA3D Splice_Site p.X288_splice 0.12 TCGA-FD-A62P-01 7 87183161 87183161 C A ABCB1 Silent p.L305L 0.22 TCGA-FD-A62P-01 7 92462586 92462586 C G CDK6 Missense_Mutation p.E18Q 0.14 tolerated(0.45) probably_damaging(0.993) TCGA-FD-A62P-01 7 99021497 99021497 G A ATP5J2-PTCD1 Silent p.I656I 0.34 TCGA-FD-A62P-01 8 101146432 101146432 G C FBXO43 Missense_Mutation p.S612C 0.45 deleterious(0.02) benign(0.198) TCGA-FD-A62P-01 8 101270861 101270861 C T RNF19A Missense_Mutation p.D814N 0.09 tolerated_low_confidence(0.08) benign(0.026) TCGA-FD-A62P-01 8 118184858 118184858 C G SLC30A8 Missense_Mutation p.Q350E 0.28 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 8 143960774 143960774 G A CYP11B1 Intron 0.16 TCGA-FD-A62P-01 8 143995818 143995818 C G CYP11B2 Missense_Mutation p.Q272H 0.12 tolerated(0.12) benign(0.111) TCGA-FD-A62P-01 8 145541061 145541062 GT - DGAT1 Frame_Shift_Del p.H343Lfs*8 0.09 TCGA-FD-A62P-01 8 27151743 27151743 G A TRIM35 Silent p.L206L 0.22 TCGA-FD-A62P-01 8 38172198 38172198 C T WHSC1L1 Missense_Mutation p.D737N 0.32 tolerated(0.12) benign(0.007) TCGA-FD-A62P-01 8 43037311 43037311 C T HGSNAT Missense_Mutation p.P346S 0.04 deleterious(0) probably_damaging(0.963) TCGA-FD-A62P-01 8 51621490 51621490 C T SNTG1 Silent p.L412L 0.32 TCGA-FD-A62P-01 8 623364 623364 C T ERICH1 Missense_Mutation p.D330N 0.06 tolerated(0.5) possibly_damaging(0.721) TCGA-FD-A62P-01 8 71068457 71068457 G C NCOA2 Missense_Mutation p.L715V 0.15 tolerated(0.41) benign(0.358) TCGA-FD-A62P-01 8 71581315 71581315 C A LACTB2 Missense_Mutation p.R14L 0.14 deleterious(0.02) benign(0.006) TCGA-FD-A62P-01 8 75761605 75761605 C G PI15 3'UTR 0.21 TCGA-FD-A62P-01 8 87060725 87060725 C A PSKH2 Missense_Mutation p.R375M 0.28 tolerated_low_confidence(0.18) benign(0.011) TCGA-FD-A62P-01 8 99030219 99030219 C T MATN2 Intron 0.16 TCGA-FD-A62P-01 9 132404198 132404198 G T ASB6 Silent p.I27I 0.08 TCGA-FD-A62P-01 9 133928005 133928005 G A LAMC3 Silent p.L586L 0.35 TCGA-FD-A62P-01 9 134025781 134025781 C T NUP214 Missense_Mutation p.A704V 0.35 benign(0.261) TCGA-FD-A62P-01 9 135973896 135973896 G A RALGDS 3'UTR 0.18 TCGA-FD-A62P-01 9 135974166 135974166 G A RALGDS Intron 0.12 TCGA-FD-A62P-01 9 135974242 135974242 G A RALGDS Intron 0.21 TCGA-FD-A62P-01 9 136918567 136918567 C T BRD3 Silent p.G11G 0.18 TCGA-FD-A62P-01 9 137019624 137019624 C A WDR5 Missense_Mutation p.S223Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 9 14746392 14746392 C T FREM1 Silent p.Q2071Q 0.09 TCGA-FD-A62P-01 9 21201949 21201949 C T IFNA7 Silent p.Q72Q 0.14 TCGA-FD-A62P-01 9 22447180 22447180 C T DMRTA1 Missense_Mutation p.S39L 0.33 tolerated(0.12) benign(0.08) TCGA-FD-A62P-01 9 34971523 34971523 C T KIAA1045 Silent p.R76R 0.08 TCGA-FD-A62P-01 9 35705821 35705821 C G TLN1 Missense_Mutation p.E1847Q 0.24 tolerated(0.17) benign(0.068) TCGA-FD-A62P-01 9 70993114 70993114 G T PGM5 Splice_Site p.X88_splice 0.12 TCGA-FD-A62P-01 9 70999325 70999325 G A PGM5 Missense_Mutation p.D146N 0.14 deleterious(0.01) possibly_damaging(0.608) TCGA-FD-A62P-01 9 95484998 95484998 C T BICD2 Silent p.S182S 0.19 TCGA-FD-A62P-01 9 98242251 98242251 C G PTCH1 Missense_Mutation p.S356T 0.19 tolerated(0.06) benign(0.045) TCGA-FD-A62P-01 X 10090763 10090763 G C WWC3 Missense_Mutation p.E579Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-FD-A62P-01 X 106091464 106091464 G A TBC1D8B Missense_Mutation p.E590K 0.17 deleterious(0) probably_damaging(0.971) TCGA-FD-A62P-01 X 109943920 109943920 C G CHRDL1 Missense_Mutation p.D191H 0.17 tolerated(0.06) possibly_damaging(0.56) TCGA-FD-A62P-01 X 130419228 130419228 T A IGSF1 Missense_Mutation p.I198F 0.19 tolerated(0.39) benign(0.343) TCGA-FD-A62P-01 X 139866480 139866480 C T CDR1 Missense_Mutation p.D18N 0.27 deleterious(0.01) possibly_damaging(0.728) TCGA-FD-A62P-01 X 149944696 149944696 G C CD99L2 Silent p.V202V 0.53 TCGA-FD-A62P-01 X 150891177 150891177 C T FATE1 Silent p.I166I 0.25 TCGA-FD-A62P-01 X 153131242 153131242 C G L1CAM Missense_Mutation p.E822Q 0.22 tolerated(0.17) benign(0.018) TCGA-FD-A62P-01 X 153172076 153172076 G A AVPR2 Missense_Mutation p.R337Q 0.24 tolerated(0.44) probably_damaging(0.961) TCGA-FD-A62P-01 X 16778562 16778562 G A SYAP1 3'UTR 0.18 TCGA-FD-A62P-01 X 17818341 17818341 T C RAI2 3'UTR 0.27 TCGA-FD-A62P-01 X 24859798 24859798 C G POLA1 Missense_Mutation p.H1250D 0.48 tolerated(0.33) benign(0.001) TCGA-FD-A62P-01 X 38260660 38260660 G T OTC Silent p.L173L 0.09 TCGA-FD-A62P-01 X 38664792 38664792 T G MID1IP1 3'UTR 0.40 TCGA-FD-A62P-01 X 39914664 39914664 G A BCOR Silent p.I1566I 0.25 TCGA-FD-A62P-01 X 40498281 40498281 C G CXorf38 Missense_Mutation p.D151H 0.12 deleterious(0) probably_damaging(0.976) TCGA-FD-A62P-01 X 48682410 48682410 G C HDAC6 Missense_Mutation p.D1128H 0.12 deleterious(0) possibly_damaging(0.735) TCGA-FD-A62P-01 Y 2846008 2846008 G T ZFY Missense_Mutation p.R370L 0.06 deleterious(0.01) possibly_damaging(0.564) TCGA-FD-A62S-01 10 135025014 135025014 G A KNDC1 Missense_Mutation p.V1333M 0.15 deleterious(0.01) possibly_damaging(0.867) TCGA-FD-A62S-01 10 81154100 81154100 C T ZCCHC24 Missense_Mutation p.G182R 0.22 deleterious(0.03) possibly_damaging(0.855) TCGA-FD-A62S-01 11 14808038 14808038 T C PDE3B Missense_Mutation p.M362T 0.27 deleterious(0) benign(0.334) TCGA-FD-A62S-01 11 55587527 55587527 T C OR5D18 Missense_Mutation p.L141P 0.13 deleterious(0) benign(0.213) TCGA-FD-A62S-01 11 67433048 67433048 C T ALDH3B2 Silent p.V138V 0.18 TCGA-FD-A62S-01 11 67433123 67433123 C G ALDH3B2 Missense_Mutation p.K113N 0.17 deleterious(0) possibly_damaging(0.876) TCGA-FD-A62S-01 11 67433142 67433142 C T ALDH3B2 Missense_Mutation p.G107E 0.16 deleterious(0) probably_damaging(0.998) TCGA-FD-A62S-01 11 83183781 83183781 G C DLG2 Missense_Mutation p.T778R 0.13 tolerated(0.08) possibly_damaging(0.791) TCGA-FD-A62S-01 12 100751232 100751232 G A SLC17A8 Silent p.V21V 0.07 TCGA-FD-A62S-01 12 101493425 101493425 C - ANO4 Frame_Shift_Del p.P658Hfs*12 0.14 TCGA-FD-A62S-01 12 113425052 113425052 C - OAS2 Frame_Shift_Del p.Q130Rfs*20 0.19 TCGA-FD-A62S-01 12 49523090 49523091 CA - TUBA1B Frame_Shift_Del p.A104Pfs*12 0.09 TCGA-FD-A62S-01 12 80647296 80647296 G A OTOGL Missense_Mutation p.G437S 0.12 tolerated(0.85) benign(0.001) TCGA-FD-A62S-01 13 37679479 37679479 C G CSNK1A1L 5'UTR 0.14 TCGA-FD-A62S-01 14 105420634 105420634 C G AHNAK2 Missense_Mutation p.R385P 0.26 benign(0.106) TCGA-FD-A62S-01 14 107170028 107170028 C A IGHV1-69 Missense_Mutation p.G85V 0.10 deleterious(0.01) possibly_damaging(0.689) TCGA-FD-A62S-01 14 23549405 23549405 A G ACIN1 Missense_Mutation p.I438T 0.15 benign(0.001) TCGA-FD-A62S-01 14 55818508 55818508 A C FBXO34 Missense_Mutation p.Q467P 0.11 deleterious(0.04) benign(0.009) TCGA-FD-A62S-01 14 89016789 89016789 C A PTPN21 5'UTR 0.21 TCGA-FD-A62S-01 14 94722857 94722857 G T PPP4R4 Missense_Mutation p.K642N 0.23 deleterious(0.01) benign(0.043) TCGA-FD-A62S-01 15 25223018 25223018 C T SNRPN Missense_Mutation p.R172W 0.17 tolerated(0.1) unknown(0) TCGA-FD-A62S-01 15 25925027 25925027 G T ATP10A Missense_Mutation p.P1321T 0.15 tolerated(0.38) benign(0.007) TCGA-FD-A62S-01 15 63948129 63948129 A G HERC1 Missense_Mutation p.V3299A 0.17 benign(0.075) TCGA-FD-A62S-01 16 56624899 56624899 C T MT3 3'UTR 0.15 TCGA-FD-A62S-01 16 72845821 72845821 C T ZFHX3 Missense_Mutation p.E1216K 0.12 benign(0.021) TCGA-FD-A62S-01 16 72991446 72991446 C A ZFHX3 Missense_Mutation p.A867S 0.06 possibly_damaging(0.622) TCGA-FD-A62S-01 16 731257 731257 C T STUB1 Silent p.L89L 0.16 TCGA-FD-A62S-01 16 83712002 83712002 G A CDH13 Missense_Mutation p.V539M 0.16 tolerated(0.08) possibly_damaging(0.672) TCGA-FD-A62S-01 16 84213622 84213622 G A TAF1C Silent p.L543L 0.27 TCGA-FD-A62S-01 17 26902260 26902260 G A ALDOC Missense_Mutation p.R69C 0.30 tolerated(0.14) benign(0.041) TCGA-FD-A62S-01 17 38933875 38933875 C G KRT27 Missense_Mutation p.R361T 0.08 deleterious(0) probably_damaging(0.999) TCGA-FD-A62S-01 17 38933922 38933922 C G KRT27 Missense_Mutation p.Q345H 0.07 deleterious(0.02) benign(0.084) TCGA-FD-A62S-01 17 56438251 56438251 A G RNF43 Missense_Mutation p.Y248H 0.10 deleterious(0) probably_damaging(0.995) TCGA-FD-A62S-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.36 deleterious(0) probably_damaging(1) TCGA-FD-A62S-01 18 19995553 19995553 G - CTAGE1 Frame_Shift_Del p.P741Qfs*15 0.12 TCGA-FD-A62S-01 19 17213124 17213124 C A MYO9B Nonsense_Mutation p.Y199* 0.17 TCGA-FD-A62S-01 19 23159340 23159340 G A ZNF728 Missense_Mutation p.R267W 0.36 tolerated(0.4) benign(0.001) TCGA-FD-A62S-01 19 6713200 6713200 C T C3 Missense_Mutation p.G335S 0.14 deleterious(0) probably_damaging(0.986) TCGA-FD-A62S-01 19 9016709 9016709 G T MUC16 Silent p.S12676S 0.15 TCGA-FD-A62S-01 1 12835919 12835919 G A PRAMEF12 Missense_Mutation p.G174D 0.12 tolerated(0.41) probably_damaging(0.996) TCGA-FD-A62S-01 1 192335194 192335195 - A RGS21 Frame_Shift_Ins p.L136Tfs*4 0.20 TCGA-FD-A62S-01 1 22186376 22186376 G A HSPG2 Missense_Mutation p.R1712C 0.32 probably_damaging(1) TCGA-FD-A62S-01 1 228559301 228559301 C T OBSCN Missense_Mutation p.P7898L 0.29 benign(0.004) TCGA-FD-A62S-01 1 232172585 232172585 C T DISC1 3'UTR 0.44 TCGA-FD-A62S-01 1 65895720 65895720 C A LEPROT Missense_Mutation p.R90S 0.07 deleterious(0) probably_damaging(0.991) TCGA-FD-A62S-01 1 76257197 76257197 T A RABGGTB Missense_Mutation p.C174S 0.16 deleterious(0) probably_damaging(0.995) TCGA-FD-A62S-01 1 76387893 76387893 T C ASB17 Missense_Mutation p.I185V 0.26 tolerated(0.25) benign(0.002) TCGA-FD-A62S-01 20 17943543 17943543 T A SNX5 Intron 0.21 TCGA-FD-A62S-01 20 36992685 36992685 C T LBP Missense_Mutation p.R237W 0.07 deleterious(0.01) possibly_damaging(0.772) TCGA-FD-A62S-01 20 55212940 55212940 G T TFAP2C Silent p.A408A 0.24 TCGA-FD-A62S-01 21 43414181 43414181 G A ZBTB21 Silent p.I8I 0.27 TCGA-FD-A62S-01 22 41565575 41565575 A G EP300 Missense_Mutation p.Y1414C 0.24 probably_damaging(0.999) TCGA-FD-A62S-01 22 42910193 42910193 G A RRP7A Silent p.L226L 0.08 TCGA-FD-A62S-01 2 179471787 179471787 G A TTN Missense_Mutation p.P17848S 0.21 TCGA-FD-A62S-01 2 217279541 217279541 G A SMARCAL1 Silent p.S38S 0.18 TCGA-FD-A62S-01 2 97492619 97492619 G A CNNM3 Silent p.K473K 0.13 TCGA-FD-A62S-01 3 108076761 108076761 A G HHLA2 Silent p.P252P 0.19 TCGA-FD-A62S-01 3 130380587 130380587 T A COL6A6 Silent p.A1979A 0.32 TCGA-FD-A62S-01 3 1337296 1337296 G T CNTN6 Missense_Mutation p.A156S 0.21 tolerated(0.68) benign(0.399) TCGA-FD-A62S-01 3 154886309 154886309 C T MME Silent p.L603L 0.13 TCGA-FD-A62S-01 3 49459813 49459813 C T AMT Missense_Mutation p.R24H 0.08 deleterious(0) benign(0.014) TCGA-FD-A62S-01 3 9489680 9489680 A G SETD5 Missense_Mutation p.K698R 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A62S-01 4 21698994 21698994 A T KCNIP4 Intron 0.11 TCGA-FD-A62S-01 4 73169717 73169717 C A ADAMTS3 Missense_Mutation p.G781C 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A62S-01 4 77652089 77652089 G A SHROOM3 Splice_Site p.X196_splice 0.16 TCGA-FD-A62S-01 4 8601310 8601310 G A CPZ Intron 0.21 TCGA-FD-A62S-01 5 135277113 135277113 T C FBXL21 RNA 0.09 TCGA-FD-A62S-01 5 140182069 140182069 C T PCDHA3 Silent p.D429D 0.22 TCGA-FD-A62S-01 5 156589643 156589643 G A FAM71B Missense_Mutation p.P545S 0.21 tolerated(0.12) benign(0.051) TCGA-FD-A62S-01 5 180622261 180622261 G A TRIM7 Missense_Mutation p.R481C 0.23 tolerated(0.05) probably_damaging(0.939) TCGA-FD-A62S-01 5 35066111 35066111 C A PRLR Missense_Mutation p.V317L 0.10 deleterious(0) possibly_damaging(0.906) TCGA-FD-A62S-01 5 54552337 54552337 C G DHX29 Missense_Mutation p.L1363F 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A62S-01 5 7789895 7789895 C A ADCY2 Silent p.A870A 0.31 TCGA-FD-A62S-01 6 152711530 152711530 C A SYNE1 Missense_Mutation p.G2688W 0.19 probably_damaging(1) TCGA-FD-A62S-01 6 166571761 166571761 A G T 3'UTR 0.15 TCGA-FD-A62S-01 6 170597470 170597470 C T DLL1 Missense_Mutation p.R176H 0.08 tolerated(0.05) probably_damaging(1) TCGA-FD-A62S-01 6 35444184 35444184 T C TEAD3 Silent p.S207S 0.09 TCGA-FD-A62S-01 6 37620082 37620082 G A MDGA1 Silent p.D339D 0.16 TCGA-FD-A62S-01 6 44227996 44227996 C T NFKBIE Silent p.A407A 0.12 TCGA-FD-A62S-01 6 66204780 66204780 T G EYS Missense_Mutation p.Q175P 0.15 tolerated(0.08) probably_damaging(0.98) TCGA-FD-A62S-01 7 73932649 73932649 A G GTF2IRD1 Missense_Mutation p.K233R 0.13 tolerated(0.12) benign(0.011) TCGA-FD-A62S-01 7 88964633 88964633 A G ZNF804B Silent p.P779P 0.07 TCGA-FD-A62S-01 8 113353837 113353837 G T CSMD3 Missense_Mutation p.T2174N 0.06 tolerated(0.05) benign(0.043) TCGA-FD-A62S-01 8 71128946 71128946 G T NCOA2 Missense_Mutation p.S12Y 0.12 tolerated(0.2) benign(0.429) TCGA-FD-A62S-01 8 93088290 93088290 A G RUNX1T1 Intron 0.11 TCGA-FD-A62S-01 9 134769316 134769318 TTG - MED27 In_Frame_Del p.T212del 0.17 TCGA-FD-A62S-01 9 138715069 138715069 C T CAMSAP1 Missense_Mutation p.A480T 0.15 tolerated(0.19) benign(0.06) TCGA-FD-A62S-01 X 102338591 102338591 C A NXF3 Missense_Mutation p.K127N 0.11 tolerated(0.15) benign(0.445) TCGA-FD-A62S-01 X 103498920 103498920 G A ESX1 Missense_Mutation p.R141C 0.18 deleterious(0) probably_damaging(0.965) TCGA-FD-A62S-01 X 107977363 107977363 C G IRS4 Missense_Mutation p.E738Q 0.16 tolerated(0.11) unknown(0) TCGA-FD-A62S-01 X 153993191 153993191 A T DKC1 Nonsense_Mutation p.K12* 0.15 TCGA-FD-A62S-01 X 19369504 19369504 G A PDHA1 Missense_Mutation p.E171K 0.06 tolerated(0.16) benign(0.009) TCGA-FD-A62S-01 X 27839479 27839479 G T MAGEB10 Missense_Mutation p.R19L 0.11 deleterious(0) benign(0.099) TCGA-FD-A62S-01 X 2827942 2827942 C A ARSD Missense_Mutation p.G405V 0.15 deleterious(0) probably_damaging(0.989) TCGA-FD-A62S-01 X 30327119 30327119 G C NR0B1 Missense_Mutation p.P121R 0.28 tolerated_low_confidence(0.23) benign(0.129) TCGA-FD-A62S-01 X 32305647 32305647 C T DMD Missense_Mutation p.G2097R 0.18 probably_damaging(0.979) TCGA-FD-A62S-01 X 32591918 32591918 G T DMD Missense_Mutation p.R550S 0.29 possibly_damaging(0.864) TCGA-FD-A62S-01 X 41586575 41586575 T C GPR82 Missense_Mutation p.M99T 0.28 tolerated(0.13) benign(0.023) TCGA-FD-A62S-01 X 83724555 83724555 A T HDX Missense_Mutation p.M59K 0.22 deleterious(0) possibly_damaging(0.621) TCGA-FD-A62S-01 X 85969636 85969636 G A DACH2 Silent p.Q339Q 0.15 TCGA-FD-A62S-01 X 91873850 91873850 A T PCDH11X Nonsense_Mutation p.K1319* 0.16 TCGA-FD-A6TA-01 10 104241854 104241854 C T ACTR1A Missense_Mutation p.E277K 0.26 tolerated(0.09) benign(0.044) TCGA-FD-A6TA-01 10 105152202 105152202 C G USMG5 Missense_Mutation p.E5Q 0.20 deleterious(0.02) possibly_damaging(0.804) TCGA-FD-A6TA-01 10 115894769 115894769 A T C10orf118 Missense_Mutation p.S520T 0.29 tolerated(0.22) benign(0.03) TCGA-FD-A6TA-01 10 120824916 120824916 C T EIF3A Missense_Mutation p.D373N 0.21 deleterious(0) unknown(0) TCGA-FD-A6TA-01 10 129908693 129908693 G A MKI67 Nonsense_Mutation p.Q789* 0.25 TCGA-FD-A6TA-01 10 134623964 134623964 C T TTC40 Missense_Mutation p.R2538K 0.34 tolerated_low_confidence(0.19) benign(0.016) TCGA-FD-A6TA-01 10 17171672 17171672 C G CUBN Missense_Mutation p.Q31H 0.25 deleterious(0.02) possibly_damaging(0.466) TCGA-FD-A6TA-01 10 292745 292745 C G ZMYND11 Silent p.V330V 0.12 TCGA-FD-A6TA-01 10 29752455 29752455 C A SVIL Missense_Mutation p.K2081N 0.26 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TA-01 10 29752497 29752497 C G SVIL Missense_Mutation p.K2067N 0.34 deleterious(0.01) benign(0.155) TCGA-FD-A6TA-01 10 29752505 29752505 C T SVIL Missense_Mutation p.E2065K 0.35 deleterious(0) benign(0.409) TCGA-FD-A6TA-01 10 33218789 33218789 G C ITGB1 Missense_Mutation p.Q113E 0.30 deleterious(0.01) benign(0.12) TCGA-FD-A6TA-01 10 64159292 64159292 G A ZNF365 Intron 0.10 TCGA-FD-A6TA-01 10 70136790 70136790 G T RUFY2 Intron 0.31 TCGA-FD-A6TA-01 10 75560414 75560414 G C ZSWIM8 Missense_Mutation p.E1681D 0.24 tolerated(0.25) possibly_damaging(0.801) TCGA-FD-A6TA-01 10 95287814 95287814 C G CEP55 Silent p.L433L 0.32 TCGA-FD-A6TA-01 10 96006249 96006249 G A PLCE1 Silent p.V989V 0.26 TCGA-FD-A6TA-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.27 TCGA-FD-A6TA-01 11 102649448 102649448 C T MMP10 Missense_Mutation p.G177R 0.26 deleterious(0.01) probably_damaging(1) TCGA-FD-A6TA-01 11 112086988 112086988 C T BCO2 Missense_Mutation p.P521S 0.43 tolerated(0.12) possibly_damaging(0.865) TCGA-FD-A6TA-01 11 121032972 121032972 G C TECTA Missense_Mutation p.C1722S 0.48 deleterious(0) probably_damaging(0.942) TCGA-FD-A6TA-01 11 125830980 125830980 C T CDON Missense_Mutation p.E1241K 0.33 deleterious(0) possibly_damaging(0.786) TCGA-FD-A6TA-01 11 128638117 128638117 C T FLI1 Missense_Mutation p.P112L 0.35 deleterious(0.01) benign(0.003) TCGA-FD-A6TA-01 11 130784459 130784459 C T SNX19 Missense_Mutation p.G459E 0.30 tolerated(1) benign(0.004) TCGA-FD-A6TA-01 11 130784943 130784943 C G SNX19 Missense_Mutation p.E298Q 0.26 tolerated(0.38) benign(0.009) TCGA-FD-A6TA-01 11 18267568 18267568 G C SAA2 Missense_Mutation p.S40C 0.24 tolerated(0.07) benign(0.029) TCGA-FD-A6TA-01 11 5510080 5510080 C A OR52D1 Silent p.L48L 0.44 TCGA-FD-A6TA-01 11 58978635 58978635 G A MPEG1 Silent p.I568I 0.30 TCGA-FD-A6TA-01 11 58978681 58978681 G C MPEG1 Missense_Mutation p.S553C 0.30 tolerated(0.17) possibly_damaging(0.524) TCGA-FD-A6TA-01 11 62414680 62414680 G C INTS5 Missense_Mutation p.Q958E 0.33 tolerated(0.3) probably_damaging(0.98) TCGA-FD-A6TA-01 11 64112132 64112132 G C CCDC88B Missense_Mutation p.E707Q 0.33 tolerated(0.06) benign(0.017) TCGA-FD-A6TA-01 11 64112210 64112210 G C CCDC88B Missense_Mutation p.E733Q 0.36 deleterious(0) possibly_damaging(0.548) TCGA-FD-A6TA-01 11 65375760 65375760 G A MAP3K11 Missense_Mutation p.S300F 0.31 deleterious(0) possibly_damaging(0.773) TCGA-FD-A6TA-01 11 66332410 66332410 C G CTSF Missense_Mutation p.E371D 0.39 tolerated(0.52) benign(0.002) TCGA-FD-A6TA-01 11 66454989 66454989 G C SPTBN2 Missense_Mutation p.R2211G 0.38 tolerated(0.15) benign(0.145) TCGA-FD-A6TA-01 11 66975111 66975111 C G KDM2A Silent p.L146L 0.29 TCGA-FD-A6TA-01 11 67192109 67192109 G A CARNS1 3'UTR 0.55 TCGA-FD-A6TA-01 11 67378662 67378662 G C NDUFV1 Silent p.L299L 0.26 TCGA-FD-A6TA-01 11 67378666 67378666 G A NDUFV1 Missense_Mutation p.E301K 0.27 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-FD-A6TA-01 11 67378957 67378957 G A NDUFV1 Missense_Mutation p.E333K 0.38 deleterious_low_confidence(0.05) benign(0.15) TCGA-FD-A6TA-01 11 74716489 74716489 C T NEU3 Missense_Mutation p.T113I 0.31 tolerated(0.08) benign(0.037) TCGA-FD-A6TA-01 11 76253250 76253250 C T C11orf30 Intron 0.28 TCGA-FD-A6TA-01 12 105514927 105514927 G A KIAA1033 Missense_Mutation p.D204N 0.26 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 12 109895444 109895444 G A KCTD10 Missense_Mutation p.S173L 0.25 deleterious(0.05) benign(0.084) TCGA-FD-A6TA-01 12 116413317 116413317 C A MED13L Intron 0.32 TCGA-FD-A6TA-01 12 118463549 118463549 C T RFC5 Intron 0.12 TCGA-FD-A6TA-01 12 118463596 118463596 C G RFC5 Missense_Mutation p.S209C 0.18 tolerated(0.07) possibly_damaging(0.631) TCGA-FD-A6TA-01 12 118693455 118693455 C A TAOK3 5'UTR 0.51 TCGA-FD-A6TA-01 12 120884103 120884103 C T TRIAP1 Missense_Mutation p.E25K 0.37 tolerated(0.05) benign(0.141) TCGA-FD-A6TA-01 12 125451354 125451354 C G DHX37 Missense_Mutation p.K525N 0.29 tolerated(0.15) benign(0.003) TCGA-FD-A6TA-01 12 132547066 132547066 C G EP400 Silent p.L2718L 0.35 TCGA-FD-A6TA-01 12 21689962 21689962 T G GYS2 Missense_Mutation p.N680H 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FD-A6TA-01 12 4446328 4446328 T C C12orf5 Splice_Site p.X64_splice 0.26 TCGA-FD-A6TA-01 12 46211536 46211536 G A ARID2 Missense_Mutation p.G168R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TA-01 12 57918741 57918741 C T MBD6 Silent p.F74F 0.22 TCGA-FD-A6TA-01 12 57919626 57919626 C T MBD6 Missense_Mutation p.S292L 0.41 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TA-01 12 57919725 57919725 C G MBD6 Missense_Mutation p.S325C 0.21 tolerated_low_confidence(0.08) unknown(0) TCGA-FD-A6TA-01 12 57919940 57919940 C T MBD6 Nonsense_Mutation p.Q397* 0.35 TCGA-FD-A6TA-01 12 66788018 66788018 G C GRIP1 Nonsense_Mutation p.S648* 0.36 TCGA-FD-A6TA-01 12 70925883 70925883 C T PTPRB Missense_Mutation p.D2146N 0.33 deleterious(0.03) possibly_damaging(0.732) TCGA-FD-A6TA-01 12 8802152 8802152 G C MFAP5 Missense_Mutation p.I118M 0.05 tolerated(0.1) probably_damaging(0.962) TCGA-FD-A6TA-01 12 92539287 92539287 C T BTG1 Missense_Mutation p.A9T 0.32 tolerated_low_confidence(0.25) benign(0.003) TCGA-FD-A6TA-01 13 21555655 21555655 G C LATS2 Nonsense_Mutation p.S872* 0.09 TCGA-FD-A6TA-01 13 28014539 28014539 G A MTIF3 Missense_Mutation p.S16F 0.15 deleterious(0.01) benign(0.001) TCGA-FD-A6TA-01 13 31727035 31727035 C G HSPH1 Missense_Mutation p.Q161H 0.29 deleterious(0.04) benign(0.052) TCGA-FD-A6TA-01 13 42783092 42783092 C T DGKH Intron 0.30 TCGA-FD-A6TA-01 13 49076927 49076927 G A RCBTB2 Silent p.F350F 0.18 TCGA-FD-A6TA-01 14 21838582 21838582 C G SUPT16H Missense_Mutation p.K132N 0.43 tolerated(0.1) benign(0.11) TCGA-FD-A6TA-01 14 33004931 33004931 C G AKAP6 Missense_Mutation p.L166V 0.38 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TA-01 14 36988528 36988528 G A NKX2-1 Missense_Mutation p.S42L 0.70 deleterious(0.03) probably_damaging(0.99) TCGA-FD-A6TA-01 14 44976278 44976278 G C FSCB 5'UTR 0.50 TCGA-FD-A6TA-01 14 55862701 55862701 C G ATG14 Splice_Site p.X95_splice 0.35 TCGA-FD-A6TA-01 14 77706871 77706871 C T TMEM63C Silent p.F328F 0.39 TCGA-FD-A6TA-01 14 89130890 89130890 C A EML5 Missense_Mutation p.G1119V 0.41 deleterious(0.02) probably_damaging(1) TCGA-FD-A6TA-01 14 94780574 94780574 C T SERPINA6 Missense_Mutation p.E138K 0.31 tolerated(1) benign(0.08) TCGA-FD-A6TA-01 15 31210496 31210496 G A FAN1 Silent p.L647L 0.31 TCGA-FD-A6TA-01 15 45003774 45003774 C G B2M Silent p.L10L 0.18 TCGA-FD-A6TA-01 15 52058762 52058762 G C TMOD2 Missense_Mutation p.E42Q 0.38 deleterious(0.01) benign(0.032) TCGA-FD-A6TA-01 15 59499919 59499919 G A LDHAL6B Silent p.L260L 0.31 TCGA-FD-A6TA-01 15 63125895 63125895 G C TLN2 Intron 0.30 TCGA-FD-A6TA-01 15 68040934 68040934 G A MAP2K5 Missense_Mutation p.D377N 0.26 tolerated(1) benign(0.114) TCGA-FD-A6TA-01 15 69006944 69006944 C T CORO2B Missense_Mutation p.S271F 0.30 deleterious(0) probably_damaging(0.978) TCGA-FD-A6TA-01 15 69080163 69080163 G C ANP32A Missense_Mutation p.I50M 0.30 deleterious(0.02) probably_damaging(0.984) TCGA-FD-A6TA-01 15 70960310 70960310 C T UACA Missense_Mutation p.E905K 0.26 tolerated(0.69) benign(0.011) TCGA-FD-A6TA-01 15 89151343 89151343 G T MIR1179 RNA 0.04 TCGA-FD-A6TA-01 15 89151351 89151351 G A MIR1179 RNA 0.04 TCGA-FD-A6TA-01 15 89866111 89866111 C T POLG Missense_Mutation p.G763E 0.32 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TA-01 16 14042115 14042115 C T ERCC4 Silent p.L888L 0.30 TCGA-FD-A6TA-01 16 15785075 15785075 G A NDE1 Missense_Mutation p.E200K 0.27 tolerated(0.24) benign(0.005) TCGA-FD-A6TA-01 16 1817296 1817296 G C MAPK8IP3 Missense_Mutation p.E1078Q 0.27 deleterious(0) possibly_damaging(0.716) TCGA-FD-A6TA-01 16 19519095 19519095 C T GDE1 Missense_Mutation p.E184K 0.18 tolerated(0.49) benign(0.063) TCGA-FD-A6TA-01 16 56518757 56518757 C T BBS2 Silent p.V694V 0.29 TCGA-FD-A6TA-01 16 57546535 57546535 C G CCDC102A 3'UTR 0.40 TCGA-FD-A6TA-01 16 57775676 57775676 G A KATNB1 Missense_Mutation p.G40R 0.50 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 16 67405141 67405141 G C LRRC36 Missense_Mutation p.S497T 0.28 tolerated(0.11) benign(0.011) TCGA-FD-A6TA-01 16 67915970 67915970 G C EDC4 Missense_Mutation p.E1040Q 0.33 tolerated(0.06) possibly_damaging(0.663) TCGA-FD-A6TA-01 16 69783014 69783014 C G NOB1 Missense_Mutation p.R178T 0.30 tolerated(0.4) benign(0.001) TCGA-FD-A6TA-01 16 77775671 77775671 G C NUDT7 Missense_Mutation p.E181Q 0.33 tolerated(0.05) benign(0.391) TCGA-FD-A6TA-01 16 90103657 90103657 G A GAS8 Missense_Mutation p.M258I 0.36 deleterious(0.03) benign(0.285) TCGA-FD-A6TA-01 17 10247123 10247123 C G MYH13 Missense_Mutation p.E630Q 0.24 deleterious(0.05) possibly_damaging(0.832) TCGA-FD-A6TA-01 17 15522516 15522516 G A CDRT1 Missense_Mutation p.S104F 0.44 tolerated(0.08) probably_damaging(0.926) TCGA-FD-A6TA-01 17 27051776 27051776 G C TLCD1 Missense_Mutation p.L166V 0.25 tolerated(0.69) benign(0.014) TCGA-FD-A6TA-01 17 32957083 32957083 C T TMEM132E Silent p.V375V 0.21 TCGA-FD-A6TA-01 17 37008985 37008985 C T RPL23 Missense_Mutation p.G33E 0.49 deleterious(0.01) probably_damaging(0.985) TCGA-FD-A6TA-01 17 37099876 37099876 C G FBXO47 Missense_Mutation p.D303H 0.10 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TA-01 17 38179630 38179630 C T MED24 Silent p.S668S 0.08 TCGA-FD-A6TA-01 17 38323834 38323834 C T CASC3 Silent p.I540I 0.07 TCGA-FD-A6TA-01 17 38324653 38324653 C G CASC3 Missense_Mutation p.L650V 0.07 tolerated(0.09) probably_damaging(0.942) TCGA-FD-A6TA-01 17 39681484 39681484 C T KRT19 Silent p.Q154Q 0.20 TCGA-FD-A6TA-01 17 40630571 40630571 G T ATP6V0A1 Missense_Mutation p.Q206H 0.16 tolerated(0.53) probably_damaging(0.948) TCGA-FD-A6TA-01 17 42294012 42294012 G C UBTF Missense_Mutation p.S40C 0.25 deleterious(0.03) possibly_damaging(0.76) TCGA-FD-A6TA-01 17 45774088 45774088 C T TBKBP1 Silent p.I79I 0.13 TCGA-FD-A6TA-01 17 48542794 48542794 C T CHAD Silent p.L315L 0.23 TCGA-FD-A6TA-01 17 49239126 49239126 G C NME1 Missense_Mutation p.E152Q 0.23 tolerated(0.59) benign(0.01) TCGA-FD-A6TA-01 17 60062137 60062137 C G MED13 Missense_Mutation p.E856Q 0.35 deleterious(0.01) possibly_damaging(0.464) TCGA-FD-A6TA-01 17 61278301 61278301 G C TANC2 Missense_Mutation p.R177T 0.23 deleterious(0.01) benign(0.119) TCGA-FD-A6TA-01 17 61895410 61895410 G C DDX42 Missense_Mutation p.E823D 0.19 tolerated_low_confidence(0.62) benign(0) TCGA-FD-A6TA-01 17 66110653 66110653 G T LINC00674 RNA 0.18 TCGA-FD-A6TA-01 17 66526542 66526542 C G PRKAR1A Silent p.L366L 0.19 TCGA-FD-A6TA-01 17 7344850 7344850 C T FGF11 Missense_Mutation p.A85V 0.37 tolerated(0.09) benign(0.009) TCGA-FD-A6TA-01 17 73515090 73515090 G A TSEN54 Silent p.L161L 0.46 TCGA-FD-A6TA-01 17 74005100 74005100 C G EVPL Missense_Mutation p.D1396H 0.27 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TA-01 19 1062220 1062220 C T ABCA7 Nonsense_Mutation p.Q1874* 0.27 TCGA-FD-A6TA-01 19 11096931 11096931 C T SMARCA4 Missense_Mutation p.S141L 0.26 possibly_damaging(0.885) TCGA-FD-A6TA-01 19 11943141 11943141 C T ZNF440 Nonsense_Mutation p.R384* 0.32 TCGA-FD-A6TA-01 19 12059200 12059200 C G ZNF700 Missense_Mutation p.P121A 0.29 tolerated(0.12) benign(0.323) TCGA-FD-A6TA-01 19 12187310 12187310 C T ZNF844 Silent p.L459L 0.23 TCGA-FD-A6TA-01 19 14065241 14065241 C G DCAF15 Silent p.L74L 0.17 TCGA-FD-A6TA-01 19 15562912 15562912 C G RASAL3 Missense_Mutation p.E946Q 0.28 tolerated(0.76) benign(0.001) TCGA-FD-A6TA-01 19 17690288 17690288 C A COLGALT1 Intron 0.27 TCGA-FD-A6TA-01 19 18172996 18172996 C T IL12RB1 Silent p.L570L 0.26 TCGA-FD-A6TA-01 19 2132479 2132479 G A AP3D1 Silent p.I151I 0.27 TCGA-FD-A6TA-01 19 29698512 29698512 G C UQCRFS1 Silent p.L256L 0.45 TCGA-FD-A6TA-01 19 36036604 36036604 C T TMEM147 5'UTR 0.39 TCGA-FD-A6TA-01 19 36370101 36370101 C G APLP1 Missense_Mutation p.I613M 0.27 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TA-01 19 39399347 39399347 C A NFKBIB Intron 0.30 TCGA-FD-A6TA-01 19 42584283 42584283 C T ZNF574 Missense_Mutation p.H509Y 0.30 deleterious(0) possibly_damaging(0.728) TCGA-FD-A6TA-01 19 44891762 44891762 C T ZNF285 Missense_Mutation p.M215I 0.25 tolerated(0.55) benign(0.001) TCGA-FD-A6TA-01 19 51984907 51984907 C T CEACAM18 Silent p.L282L 0.37 TCGA-FD-A6TA-01 19 52393872 52393872 C T ZNF649 Silent p.%3D 0.29 TCGA-FD-A6TA-01 19 52568727 52568727 C G ZNF841 Missense_Mutation p.R803T 0.13 tolerated(0.54) benign(0.122) TCGA-FD-A6TA-01 19 52569455 52569455 C G ZNF841 Missense_Mutation p.M560I 0.37 deleterious(0.02) benign(0.008) TCGA-FD-A6TA-01 19 53431818 53431818 C T ZNF321P 3'UTR 0.33 TCGA-FD-A6TA-01 19 53855148 53855148 G C ZNF845 Missense_Mutation p.G407A 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-FD-A6TA-01 19 5778417 5778417 C G CATSPERD Missense_Mutation p.I709M 0.19 deleterious(0) probably_damaging(0.967) TCGA-FD-A6TA-01 19 58806907 58806907 G A ZNF8 3'UTR 0.25 TCGA-FD-A6TA-01 19 58807012 58807012 G A ZNF8 3'UTR 0.15 TCGA-FD-A6TA-01 19 59027763 59027763 C T ZBTB45 Silent p.S426S 0.32 TCGA-FD-A6TA-01 19 6426429 6426429 C T SLC25A41 Missense_Mutation p.E362K 0.33 deleterious(0.01) benign(0.099) TCGA-FD-A6TA-01 19 6591014 6591014 C A CD70 5'UTR 0.36 TCGA-FD-A6TA-01 1 10380107 10380107 G T KIF1B Nonsense_Mutation p.E662* 0.30 TCGA-FD-A6TA-01 1 11319377 11319377 C G MTOR Missense_Mutation p.K30N 0.32 deleterious(0.02) benign(0.164) TCGA-FD-A6TA-01 1 115168413 115168413 C G DENND2C Missense_Mutation p.E65Q 0.31 tolerated(0.35) benign(0.006) TCGA-FD-A6TA-01 1 152080535 152080535 C G TCHH Missense_Mutation p.E1720Q 0.30 unknown(0) TCGA-FD-A6TA-01 1 152081424 152081424 C T TCHH Silent p.L1423L 0.30 TCGA-FD-A6TA-01 1 160109760 160109760 G A ATP1A2 Missense_Mutation p.R1007Q 0.36 deleterious(0) possibly_damaging(0.686) TCGA-FD-A6TA-01 1 167096804 167096804 C T DUSP27 Silent p.C812C 0.33 TCGA-FD-A6TA-01 1 16918399 16918399 C A NBPF1 Nonsense_Mutation p.E40* 0.05 TCGA-FD-A6TA-01 1 173884047 173884047 G C SERPINC1 Missense_Mutation p.L18V 0.28 deleterious_low_confidence(0.01) benign(0.405) TCGA-FD-A6TA-01 1 1961619 1961619 C G GABRD Silent p.L419L 0.24 TCGA-FD-A6TA-01 1 196887337 196887337 C T CFHR4 Intron 0.19 TCGA-FD-A6TA-01 1 198725306 198725306 C T PTPRC Missense_Mutation p.S1306L 0.24 deleterious_low_confidence(0) benign(0.231) TCGA-FD-A6TA-01 1 201038623 201038623 G A CACNA1S Missense_Mutation p.R823W 0.53 deleterious(0) possibly_damaging(0.776) TCGA-FD-A6TA-01 1 201437606 201437606 G A PHLDA3 Silent p.V103V 0.30 TCGA-FD-A6TA-01 1 208390179 208390179 G C PLXNA2 Missense_Mutation p.I363M 0.35 deleterious(0) possibly_damaging(0.581) TCGA-FD-A6TA-01 1 209782353 209782353 G A CAMK1G Missense_Mutation p.E222K 0.27 deleterious(0) possibly_damaging(0.78) TCGA-FD-A6TA-01 1 20980159 20980159 C G DDOST Missense_Mutation p.E318D 0.10 deleterious(0.02) benign(0.05) TCGA-FD-A6TA-01 1 212558699 212558699 G T TMEM206 Missense_Mutation p.L199M 0.22 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-FD-A6TA-01 1 215972398 215972398 C T USH2A Missense_Mutation p.R3270K 0.34 benign(0.003) TCGA-FD-A6TA-01 1 220440606 220440606 G C RAB3GAP2 Intron 0.31 TCGA-FD-A6TA-01 1 22158275 22158275 G C HSPG2 Nonsense_Mutation p.S3741* 0.28 TCGA-FD-A6TA-01 1 22216603 22216603 C T HSPG2 Missense_Mutation p.D149N 0.21 probably_damaging(0.968) TCGA-FD-A6TA-01 1 222801874 222801874 G A MIA3 Missense_Mutation p.D438N 0.04 deleterious(0.03) benign(0.115) TCGA-FD-A6TA-01 1 228401894 228401894 C G OBSCN Silent p.L426L 0.27 TCGA-FD-A6TA-01 1 235611678 235611678 C G TBCE Missense_Mutation p.Q472E 0.31 deleterious(0) benign(0.071) TCGA-FD-A6TA-01 1 242042635 242042635 C T EXO1 Missense_Mutation p.S700F 0.24 deleterious(0) possibly_damaging(0.563) TCGA-FD-A6TA-01 1 25599098 25599098 G A RHD Silent p.L20L 0.27 TCGA-FD-A6TA-01 1 25599156 25599156 G A RHD Missense_Mutation p.D40N 0.28 tolerated(0.17) benign(0.22) TCGA-FD-A6TA-01 1 28165337 28165337 G C PPP1R8 Missense_Mutation p.R82T 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-FD-A6TA-01 1 40928311 40928311 C G ZFP69B Missense_Mutation p.Q219E 0.23 tolerated(1) benign(0.075) TCGA-FD-A6TA-01 1 40928688 40928688 C T ZFP69B Silent p.F344F 0.33 TCGA-FD-A6TA-01 1 40928710 40928710 C G ZFP69B Missense_Mutation p.Q352E 0.32 tolerated(0.08) benign(0.219) TCGA-FD-A6TA-01 1 40928940 40928940 C A ZFP69B Missense_Mutation p.F428L 0.33 deleterious(0) benign(0.038) TCGA-FD-A6TA-01 1 40929091 40929091 C G ZFP69B Missense_Mutation p.H479D 0.26 tolerated(0.15) benign(0.067) TCGA-FD-A6TA-01 1 43916152 43916152 G C SZT2 3'UTR 0.29 TCGA-FD-A6TA-01 1 67519607 67519607 C A SLC35D1 Silent p.G30G 0.19 TCGA-FD-A6TA-01 20 210144 210144 G C DEFB129 Missense_Mutation p.R95T 0.39 tolerated(0.81) benign(0.001) TCGA-FD-A6TA-01 20 21195243 21195243 C T RP4-777D9.2 Intron 0.17 TCGA-FD-A6TA-01 20 25656944 25656944 C T ZNF337 Missense_Mutation p.R327Q 0.24 tolerated(0.21) possibly_damaging(0.863) TCGA-FD-A6TA-01 20 3128108 3128108 G A FASTKD5 Missense_Mutation p.L537F 0.41 tolerated(0.08) possibly_damaging(0.489) TCGA-FD-A6TA-01 20 3183980 3183980 C T DDRGK1 Silent p.P58P 0.19 TCGA-FD-A6TA-01 20 31973474 31973474 C T CDK5RAP1 Silent p.V286V 0.26 TCGA-FD-A6TA-01 20 39991162 39991162 C T EMILIN3 Silent p.R349R 0.15 TCGA-FD-A6TA-01 20 43653679 43653679 G T STK4 Nonsense_Mutation p.E405* 0.27 TCGA-FD-A6TA-01 20 47989977 47989977 C G KCNB1 Missense_Mutation p.G707A 0.08 tolerated_low_confidence(0.75) benign(0.01) TCGA-FD-A6TA-01 20 590476 590476 C T TCF15 Missense_Mutation p.D136N 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A6TA-01 20 5905672 5905672 G C CHGB Missense_Mutation p.E671Q 0.27 deleterious(0) probably_damaging(0.92) TCGA-FD-A6TA-01 20 62329778 62329778 G A TNFRSF6B Silent p.L255L 0.38 TCGA-FD-A6TA-01 20 9319664 9319664 G A PLCB4 Missense_Mutation p.E117K 0.35 tolerated(0.64) benign(0.228) TCGA-FD-A6TA-01 21 17443667 17443667 C T LINC00478 RNA 0.58 TCGA-FD-A6TA-01 21 30428810 30428810 C T CCT8 Missense_Mutation p.D545N 0.65 deleterious(0.01) unknown(0) TCGA-FD-A6TA-01 21 30442607 30442608 - CT CCT8 Frame_Shift_Ins p.E38Rfs*16 0.21 TCGA-FD-A6TA-01 21 31655195 31655195 G C KRTAP24-1 Nonsense_Mutation p.S19* 0.16 TCGA-FD-A6TA-01 21 44845317 44845317 C T SIK1 Silent p.L81L 0.33 TCGA-FD-A6TA-01 21 45390599 45390599 G A AGPAT3 Silent p.A192A 0.47 TCGA-FD-A6TA-01 22 20109874 20109874 C G RANBP1 Missense_Mutation p.H80Q 0.34 deleterious(0) probably_damaging(0.955) TCGA-FD-A6TA-01 22 21975863 21975863 G T UBE2L3 Missense_Mutation p.D182Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TA-01 22 22869859 22869859 C T ZNF280A Silent p.L32L 0.33 TCGA-FD-A6TA-01 22 36691013 36691013 C A MYH9 Nonsense_Mutation p.E1199* 0.27 TCGA-FD-A6TA-01 22 38119881 38119881 G C TRIOBP Missense_Mutation p.A440P 0.27 deleterious_low_confidence(0.02) benign(0.029) TCGA-FD-A6TA-01 22 44377326 44377326 C T SAMM50 Missense_Mutation p.S331L 0.33 tolerated(0.66) benign(0.004) TCGA-FD-A6TA-01 22 50654297 50654297 G T SELO Splice_Site p.X501_splice 0.20 TCGA-FD-A6TA-01 2 141359179 141359179 G C LRP1B Missense_Mutation p.H2277D 0.35 benign(0.227) TCGA-FD-A6TA-01 2 170592674 170592674 G A KLHL23 Missense_Mutation p.E384K 0.22 tolerated(0.65) benign(0.002) TCGA-FD-A6TA-01 2 176001210 176001210 G A ATF2 5'UTR 0.30 TCGA-FD-A6TA-01 2 193049155 193049155 C T TMEFF2 Missense_Mutation p.E113K 0.33 deleterious(0) possibly_damaging(0.887) TCGA-FD-A6TA-01 2 198495939 198495939 C T RFTN2 Missense_Mutation p.D242N 0.32 deleterious(0.05) benign(0.019) TCGA-FD-A6TA-01 2 198570227 198570227 C T MARS2 Missense_Mutation p.S33F 0.27 tolerated_low_confidence(0.19) benign(0.073) TCGA-FD-A6TA-01 2 204075686 204075686 G C NBEAL1 Missense_Mutation p.K2568N 0.27 deleterious(0.01) possibly_damaging(0.609) TCGA-FD-A6TA-01 2 24888754 24888754 C T NCOA1 Nonsense_Mutation p.Q76* 0.36 TCGA-FD-A6TA-01 2 29072914 29072914 C G TRMT61B 3'UTR 0.24 TCGA-FD-A6TA-01 2 39283887 39283887 C G SOS1 Missense_Mutation p.E156Q 0.24 deleterious(0.04) probably_damaging(0.943) TCGA-FD-A6TA-01 2 44549007 44549007 G A PREPL Nonsense_Mutation p.Q685* 0.31 TCGA-FD-A6TA-01 2 62095769 62095769 C G CCT4 3'UTR 0.35 TCGA-FD-A6TA-01 2 69093615 69093615 G A BMP10 Silent p.I141I 0.33 TCGA-FD-A6TA-01 2 86266519 86266519 G C POLR1A Silent p.L1269L 0.27 TCGA-FD-A6TA-01 2 86266558 86266558 G C POLR1A Missense_Mutation p.S1256R 0.27 deleterious(0) probably_damaging(0.991) TCGA-FD-A6TA-01 2 97369346 97369346 G C LMAN2L 3'Flank 0.18 TCGA-FD-A6TA-01 3 10089677 10089677 C T FANCD2 Missense_Mutation p.S452L 0.28 tolerated(0.74) benign(0.012) TCGA-FD-A6TA-01 3 120499998 120499998 C G GTF2E1 Missense_Mutation p.S334C 0.30 deleterious(0.02) possibly_damaging(0.711) TCGA-FD-A6TA-01 3 121345706 121345706 G A FBXO40 Silent p.E693E 0.30 TCGA-FD-A6TA-01 3 121414199 121414199 G A GOLGB1 Missense_Mutation p.S1724F 0.30 benign(0.034) TCGA-FD-A6TA-01 3 122003488 122003488 G A CASR Missense_Mutation p.R906H 0.36 tolerated_low_confidence(0.11) probably_damaging(0.996) TCGA-FD-A6TA-01 3 12949940 12949940 C T IQSEC1 Silent p.L902L 0.43 TCGA-FD-A6TA-01 3 133661493 133661493 C G SLCO2A1 Silent p.L527L 0.39 TCGA-FD-A6TA-01 3 17052496 17052496 C T PLCL2 Missense_Mutation p.S427F 0.38 tolerated(0.15) benign(0.048) TCGA-FD-A6TA-01 3 188242483 188242483 A G LPP Missense_Mutation p.R113G 0.34 deleterious(0.05) probably_damaging(0.998) TCGA-FD-A6TA-01 3 191107383 191107383 C G CCDC50 Missense_Mutation p.S474C 0.20 deleterious(0) probably_damaging(0.967) TCGA-FD-A6TA-01 3 192635536 192635536 G A MB21D2 Missense_Mutation p.R32W 0.30 deleterious(0) possibly_damaging(0.639) TCGA-FD-A6TA-01 3 194159590 194159590 C G ATP13A3 Missense_Mutation p.E608Q 0.24 tolerated(0.28) benign(0.062) TCGA-FD-A6TA-01 3 196650364 196650364 C G SENP5 Missense_Mutation p.S655C 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A6TA-01 3 27418302 27418302 C G SLC4A7 Missense_Mutation p.E1200Q 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.458) TCGA-FD-A6TA-01 3 3133952 3133952 C T IL5RA Missense_Mutation p.R317K 0.21 tolerated(0.06) possibly_damaging(0.597) TCGA-FD-A6TA-01 3 37042445 37042445 G A MLH1 Splice_Site p.X70_splice 0.23 TCGA-FD-A6TA-01 3 47890700 47890700 C G DHX30 Nonsense_Mutation p.S983* 0.21 TCGA-FD-A6TA-01 3 48611123 48611123 C T COL7A1 Silent p.P2191P 0.27 TCGA-FD-A6TA-01 3 57303869 57303869 G C APPL1 3'UTR 0.50 TCGA-FD-A6TA-01 3 88199196 88199196 C A C3orf38 5'UTR 0.28 TCGA-FD-A6TA-01 3 98489773 98489773 C G ST3GAL6 Nonsense_Mutation p.S47* 0.29 TCGA-FD-A6TA-01 4 118975893 118975893 G A NDST3 Silent p.L276L 0.23 TCGA-FD-A6TA-01 4 122085298 122085298 G C TNIP3 Missense_Mutation p.P72A 0.36 tolerated(0.62) benign(0.269) TCGA-FD-A6TA-01 4 138451460 138451460 C T PCDH18 Missense_Mutation p.E595K 0.31 tolerated(0.17) benign(0.297) TCGA-FD-A6TA-01 4 148993243 148993243 C G ARHGAP10 3'UTR 0.12 TCGA-FD-A6TA-01 4 152625030 152625030 C G PET112 Missense_Mutation p.R327T 0.40 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 4 156632145 156632145 G A GUCY1A3 Silent p.V276V 0.31 TCGA-FD-A6TA-01 4 159789595 159789595 G C FNIP2 Missense_Mutation p.E603Q 0.19 tolerated_low_confidence(0.24) possibly_damaging(0.66) TCGA-FD-A6TA-01 4 2242511 2242511 C G HAUS3 Missense_Mutation p.E55Q 0.39 deleterious(0.05) benign(0.361) TCGA-FD-A6TA-01 4 56329885 56329885 C A CLOCK Nonsense_Mutation p.E176* 0.32 TCGA-FD-A6TA-01 4 57265347 57265347 C A PPAT Nonsense_Mutation p.E412* 0.35 TCGA-FD-A6TA-01 4 62363000 62363000 G A LPHN3 5'UTR 0.41 TCGA-FD-A6TA-01 4 78081929 78081929 G C CCNG2 Missense_Mutation p.R111T 0.23 deleterious(0) possibly_damaging(0.568) TCGA-FD-A6TA-01 4 8229089 8229089 C T SH3TC1 Silent p.L556L 0.32 TCGA-FD-A6TA-01 4 8372712 8372712 C T ACOX3 Missense_Mutation p.D636N 0.32 tolerated(0.13) possibly_damaging(0.507) TCGA-FD-A6TA-01 4 84457852 84457852 C T AGPAT9 Missense_Mutation p.S26L 0.21 deleterious(0) benign(0.222) TCGA-FD-A6TA-01 4 95191898 95191898 C G SMARCAD1 Missense_Mutation p.Q501E 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 4 96123972 96123972 G C UNC5C Silent p.L682L 0.22 TCGA-FD-A6TA-01 5 109026012 109026012 C T MAN2A1 5'UTR 0.38 TCGA-FD-A6TA-01 5 122923805 122923805 C T CSNK1G3 Silent p.F239F 0.45 TCGA-FD-A6TA-01 5 135385267 135385267 G A TGFBI Missense_Mutation p.R304K 0.42 tolerated(1) benign(0.004) TCGA-FD-A6TA-01 5 140308510 140308510 C T PCDHAC1 Missense_Mutation p.S678F 0.39 deleterious(0.04) benign(0.332) TCGA-FD-A6TA-01 5 142780405 142780405 C G NR3C1 5'UTR 0.46 TCGA-FD-A6TA-01 5 149003653 149003653 C T ARHGEF37 Missense_Mutation p.R472C 0.45 tolerated(0.1) benign(0.001) TCGA-FD-A6TA-01 5 170341202 170341202 C T RANBP17 Silent p.F264F 0.56 TCGA-FD-A6TA-01 5 32712443 32712443 G T NPR3 Missense_Mutation p.M187I 0.30 tolerated(0.58) benign(0.144) TCGA-FD-A6TA-01 5 37294435 37294435 G A NUP155 Missense_Mutation p.S1309L 0.33 deleterious(0.01) benign(0.027) TCGA-FD-A6TA-01 5 37294509 37294509 G A NUP155 Silent p.F1284F 0.20 TCGA-FD-A6TA-01 5 43446647 43446647 G C C5orf28 Missense_Mutation p.L109V 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A6TA-01 5 68498364 68498364 G C CENPH Missense_Mutation p.E135Q 0.43 tolerated(0.29) benign(0.003) TCGA-FD-A6TA-01 5 71490800 71490800 G A MAP1B Missense_Mutation p.D540N 0.39 unknown(0) TCGA-FD-A6TA-01 5 75428132 75428132 C G SV2C Missense_Mutation p.P186R 0.23 deleterious(0.01) probably_damaging(0.921) TCGA-FD-A6TA-01 6 118790255 118790255 G T CEP85L Nonsense_Mutation p.S748* 0.33 TCGA-FD-A6TA-01 6 123332160 123332160 C G CLVS2 Missense_Mutation p.I140M 0.21 tolerated(0.12) benign(0.299) TCGA-FD-A6TA-01 6 1313296 1313297 - C FOXQ1 Frame_Shift_Ins p.Y122Lfs*327 0.21 TCGA-FD-A6TA-01 6 133802638 133802638 C G EYA4 Missense_Mutation p.I336M 0.29 tolerated(0.1) possibly_damaging(0.459) TCGA-FD-A6TA-01 6 151687168 151687168 C T ZBTB2 Missense_Mutation p.D345N 0.31 tolerated(0.08) probably_damaging(0.984) TCGA-FD-A6TA-01 6 157150475 157150475 C T ARID1B Missense_Mutation p.P553S 0.38 probably_damaging(0.998) TCGA-FD-A6TA-01 6 158487635 158487635 C T SYNJ2 Missense_Mutation p.S562L 0.40 tolerated(0.19) benign(0.017) TCGA-FD-A6TA-01 6 160205095 160205095 C A TCP1 Missense_Mutation p.M225I 0.41 deleterious(0) probably_damaging(0.937) TCGA-FD-A6TA-01 6 26032042 26032042 G T HIST1H3B Missense_Mutation p.L83I 0.33 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-FD-A6TA-01 6 28227544 28227544 G C NKAPL Missense_Mutation p.G132A 0.29 deleterious(0) unknown(0) TCGA-FD-A6TA-01 6 3010384 3010384 A G NQO2 Missense_Mutation p.M45V 0.24 deleterious(0.02) probably_damaging(0.935) TCGA-FD-A6TA-01 6 31795779 31795779 G A HSPA1B Missense_Mutation p.V18M 0.33 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FD-A6TA-01 6 32170312 32170312 C T NOTCH4 Missense_Mutation p.G1099E 0.34 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 6 32181995 32181995 C G NOTCH4 Missense_Mutation p.E687Q 0.32 tolerated(0.15) possibly_damaging(0.513) TCGA-FD-A6TA-01 6 33244237 33244237 G C RPS18 Missense_Mutation p.K151N 0.24 deleterious(0) unknown(0) TCGA-FD-A6TA-01 6 35454317 35454317 C G TEAD3 Missense_Mutation p.Q41H 0.27 deleterious(0.02) possibly_damaging(0.734) TCGA-FD-A6TA-01 6 4069100 4069100 C T FAM217A Missense_Mutation p.E453K 0.32 deleterious(0) possibly_damaging(0.903) TCGA-FD-A6TA-01 6 55684502 55684502 C T BMP5 Missense_Mutation p.E212K 0.35 tolerated(0.33) benign(0.038) TCGA-FD-A6TA-01 6 57013278 57013278 C T ZNF451 Missense_Mutation p.H799Y 0.29 tolerated(0.19) benign(0.002) TCGA-FD-A6TA-01 6 617745 617745 G C EXOC2 Silent p.L209L 0.30 TCGA-FD-A6TA-01 6 656236 656236 G C HUS1B Missense_Mutation p.L237V 0.29 tolerated(0.09) probably_damaging(0.995) TCGA-FD-A6TA-01 6 70886415 70886415 G A COL19A1 Missense_Mutation p.D876N 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 6 72892108 72892108 G A RIMS1 Missense_Mutation p.E312K 0.24 tolerated(0.17) probably_damaging(0.991) TCGA-FD-A6TA-01 6 8422706 8422706 G A SLC35B3 Nonsense_Mutation p.Q191* 0.28 TCGA-FD-A6TA-01 6 90374212 90374212 C T MDN1 Missense_Mutation p.E4744K 0.24 benign(0.024) TCGA-FD-A6TA-01 6 90374320 90374320 C G MDN1 Missense_Mutation p.E4708Q 0.25 benign(0.327) TCGA-FD-A6TA-01 7 108154679 108154679 C G PNPLA8 Missense_Mutation p.R372T 0.02 tolerated(0.12) benign(0.068) TCGA-FD-A6TA-01 7 116165111 116165111 G T CAV1 5'UTR 0.30 TCGA-FD-A6TA-01 7 128491402 128491402 G A FLNC Missense_Mutation p.D1886N 0.16 tolerated(0.12) benign(0.059) TCGA-FD-A6TA-01 7 141478837 141478837 G C TAS2R4 Missense_Mutation p.L183F 0.21 deleterious(0.03) benign(0.101) TCGA-FD-A6TA-01 7 141490141 141490141 G C TAS2R5 5'UTR 0.36 TCGA-FD-A6TA-01 7 141491028 141491028 G C TAS2R5 Missense_Mutation p.K289N 0.37 tolerated(0.1) probably_damaging(0.984) TCGA-FD-A6TA-01 7 144059814 144059814 G C ARHGEF5 Missense_Mutation p.E18Q 0.14 tolerated(0.14) benign(0.058) TCGA-FD-A6TA-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.27 tolerated(0.1) benign(0.189) TCGA-FD-A6TA-01 7 21721170 21721170 C G DNAH11 Missense_Mutation p.Q1784E 0.21 probably_damaging(0.937) TCGA-FD-A6TA-01 7 24690309 24690309 G C MPP6 Missense_Mutation p.R210T 0.41 tolerated(0.34) benign(0.002) TCGA-FD-A6TA-01 7 30485766 30485766 G A NOD1 Missense_Mutation p.S815F 0.39 tolerated(0.78) benign(0.002) TCGA-FD-A6TA-01 7 5253977 5253977 G A WIPI2 Intron 0.31 TCGA-FD-A6TA-01 7 72419134 72419134 G C POM121 3'UTR 0.31 TCGA-FD-A6TA-01 7 76254892 76254892 C T POMZP3 Silent p.R58R 0.26 TCGA-FD-A6TA-01 7 83636753 83636753 G A SEMA3A Silent p.F352F 0.25 TCGA-FD-A6TA-01 7 97862900 97862900 G A TECPR1 Missense_Mutation p.S502L 0.85 tolerated(0.21) benign(0.001) TCGA-FD-A6TA-01 7 98581745 98581745 C A TRRAP Missense_Mutation p.Q3022K 0.25 benign(0.295) TCGA-FD-A6TA-01 8 105456483 105456483 C A DPYS Missense_Mutation p.R262S 0.19 deleterious(0.01) possibly_damaging(0.883) TCGA-FD-A6TA-01 8 128750924 128750924 C G MYC Missense_Mutation p.S154W 0.22 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 8 144810877 144810877 C G FAM83H Missense_Mutation p.E252Q 0.35 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TA-01 8 22058657 22058657 C T BMP1 Intron 0.49 TCGA-FD-A6TA-01 8 48740849 48740849 C T PRKDC Silent p.E2818E 0.33 TCGA-FD-A6TA-01 8 59548076 59548076 G A NSMAF Missense_Mutation p.S91L 0.05 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TA-01 8 68150714 68150714 G A ARFGEF1 Silent p.I1051I 0.34 TCGA-FD-A6TA-01 8 70585273 70585273 C G SLCO5A1 Missense_Mutation p.R793T 0.26 tolerated_low_confidence(0.13) benign(0.002) TCGA-FD-A6TA-01 8 72128960 72128960 C G EYA1 Missense_Mutation p.E443Q 0.33 deleterious(0) benign(0.445) TCGA-FD-A6TA-01 8 74601043 74601043 G T STAU2 Missense_Mutation p.F40L 0.40 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TA-01 8 95888689 95888689 G C INTS8 Missense_Mutation p.R948T 0.29 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TA-01 8 95888700 95888700 G C INTS8 Missense_Mutation p.D952H 0.26 tolerated(0.34) probably_damaging(0.912) TCGA-FD-A6TA-01 9 100080814 100080814 G C CCDC180 Missense_Mutation p.K387N 0.43 tolerated(0.27) benign(0.176) TCGA-FD-A6TA-01 9 124115566 124115566 G C STOM Missense_Mutation p.L85V 0.45 tolerated(0.09) benign(0.327) TCGA-FD-A6TA-01 9 131219695 131219695 C T ODF2 Missense_Mutation p.S4L 0.45 deleterious_low_confidence(0) benign(0.142) TCGA-FD-A6TA-01 9 132642525 132642525 G A USP20 Silent p.K906K 0.57 TCGA-FD-A6TA-01 9 137804865 137804865 C G FCN1 Missense_Mutation p.W155C 0.50 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TA-01 9 27524619 27524619 C T IFNK Silent p.F95F 0.07 TCGA-FD-A6TA-01 9 33799114 33799114 G C PRSS3 Missense_Mutation p.G284A 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A6TA-01 9 35310672 35310672 G C UNC13B Missense_Mutation p.E324Q 0.50 tolerated_low_confidence(0.19) benign(0.001) TCGA-FD-A6TA-01 9 5126756 5126756 C T JAK2 Nonsense_Mutation p.R1122* 0.41 TCGA-FD-A6TA-01 9 742241 742241 G A KANK1 Missense_Mutation p.G1245R 0.06 deleterious(0) probably_damaging(1) TCGA-FD-A6TA-01 9 80919828 80919828 C T PSAT1 Silent p.I123I 0.27 TCGA-FD-A6TA-01 X 114357122 114357122 G T LRCH2 Missense_Mutation p.L716I 0.36 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TA-01 X 123196764 123196764 A T STAG2 Nonsense_Mutation p.K551* 0.59 TCGA-FD-A6TA-01 X 154156856 154156856 G C F8 Missense_Mutation p.L1737V 0.77 tolerated(0.14) benign(0.001) TCGA-FD-A6TA-01 X 20236925 20236925 G C RPS6KA3 Intron 0.62 TCGA-FD-A6TA-01 X 44948995 44948995 T A KDM6A Missense_Mutation p.L1186M 0.53 tolerated(0.05) benign(0.141) TCGA-FD-A6TA-01 X 47041576 47041576 C T RBM10 Nonsense_Mutation p.Q601* 0.57 TCGA-FD-A6TB-01 10 127442406 127442406 G C EDRF1 Missense_Mutation p.K1179N 0.08 tolerated(0.17) benign(0.268) TCGA-FD-A6TB-01 10 16547137 16547137 G A PTER Missense_Mutation p.D273N 0.13 tolerated(0.23) benign(0.006) TCGA-FD-A6TB-01 10 50574201 50574201 G C DRGX Missense_Mutation p.S256C 0.07 deleterious_low_confidence(0.03) benign(0.078) TCGA-FD-A6TB-01 10 72299450 72299450 C T PALD1 Missense_Mutation p.R614C 0.14 tolerated(0.07) benign(0.009) TCGA-FD-A6TB-01 10 75005705 75005705 T C DNAJC9 Missense_Mutation p.Q184R 0.12 tolerated(0.28) benign(0.002) TCGA-FD-A6TB-01 10 75530719 75530719 G A SEC24C Missense_Mutation p.V1051M 0.08 deleterious(0.01) possibly_damaging(0.886) TCGA-FD-A6TB-01 10 90122330 90122330 C T RNLS Missense_Mutation p.D227N 0.17 deleterious(0) probably_damaging(0.987) TCGA-FD-A6TB-01 10 93615440 93615440 C T TNKS2 Missense_Mutation p.L995F 0.10 deleterious(0.02) possibly_damaging(0.872) TCGA-FD-A6TB-01 11 108409778 108409778 G C EXPH5 Nonsense_Mutation p.S139* 0.12 TCGA-FD-A6TB-01 11 111367977 111367977 G T BTG4 Missense_Mutation p.R157S 0.14 tolerated(0.22) benign(0.106) TCGA-FD-A6TB-01 11 118373897 118373897 G A KMT2A Silent p.Q2430Q 0.15 TCGA-FD-A6TB-01 11 119535534 119535534 C G PVRL1 Missense_Mutation p.E493Q 0.16 deleterious_low_confidence(0.01) benign(0.131) TCGA-FD-A6TB-01 11 12225944 12225944 C T MICAL2 Missense_Mutation p.R138C 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A6TB-01 11 134243652 134243652 G A GLB1L2 Silent p.L515L 0.11 TCGA-FD-A6TB-01 11 19167733 19167733 G T ZDHHC13 Missense_Mutation p.G60V 0.14 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TB-01 11 19901579 19901579 C T NAV2 Nonsense_Mutation p.Q226* 0.23 TCGA-FD-A6TB-01 11 26587346 26587346 C T MUC15 Silent p.G47G 0.09 TCGA-FD-A6TB-01 11 44616272 44616272 C G CD82 Missense_Mutation p.F20L 0.15 deleterious(0.02) possibly_damaging(0.85) TCGA-FD-A6TB-01 11 59622251 59622251 G C TCN1 Nonsense_Mutation p.S332* 0.12 TCGA-FD-A6TB-01 11 64012085 64012085 G C PPP1R14B 3'UTR 0.19 TCGA-FD-A6TB-01 11 64012289 64012289 G A PPP1R14B Silent p.F127F 0.18 TCGA-FD-A6TB-01 11 64977530 64977530 G C CAPN1 Missense_Mutation p.M635I 0.14 tolerated(0.53) benign(0.357) TCGA-FD-A6TB-01 11 66392624 66392624 C G RBM14 Missense_Mutation p.S426C 0.13 deleterious(0) unknown(0) TCGA-FD-A6TB-01 11 68204361 68204361 C G LRP5 Missense_Mutation p.I1335M 0.19 tolerated(0.15) benign(0.375) TCGA-FD-A6TB-01 11 722438 722438 C G EPS8L2 Missense_Mutation p.S366C 0.20 deleterious(0) probably_damaging(0.954) TCGA-FD-A6TB-01 11 723320 723320 C T EPS8L2 Missense_Mutation p.A474V 0.15 tolerated(0.45) benign(0) TCGA-FD-A6TB-01 11 74340326 74340326 A G POLD3 Missense_Mutation p.R322G 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A6TB-01 11 86017314 86017314 G A C11orf73 Missense_Mutation p.E20K 0.17 tolerated(0.08) benign(0.243) TCGA-FD-A6TB-01 11 93471479 93471479 C G TAF1D Missense_Mutation p.K85N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TB-01 12 100813592 100813592 G C SLC17A8 Splice_Site p.X476_splice 0.12 TCGA-FD-A6TB-01 12 101696246 101696246 C G UTP20 Missense_Mutation p.Q566E 0.08 tolerated(0.08) possibly_damaging(0.493) TCGA-FD-A6TB-01 12 111885521 111885521 C T SH2B3 Missense_Mutation p.S433L 0.06 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TB-01 12 113710476 113710476 C T TPCN1 Silent p.F326F 0.06 TCGA-FD-A6TB-01 12 27461378 27461378 G C STK38L Missense_Mutation p.R98T 0.13 deleterious(0) probably_damaging(0.978) TCGA-FD-A6TB-01 12 46242729 46242729 C T ARID2 Missense_Mutation p.S564L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TB-01 12 49937815 49937815 C T KCNH3 Missense_Mutation p.A314V 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A6TB-01 12 52911913 52911913 C G KRT5 Missense_Mutation p.E269Q 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A6TB-01 12 56492623 56492623 G C ERBB3 Missense_Mutation p.E925Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TB-01 12 56498486 56498486 C T PA2G4 5'UTR 0.33 TCGA-FD-A6TB-01 12 69140310 69140310 C T SLC35E3 Silent p.F51F 0.06 TCGA-FD-A6TB-01 13 28913371 28913371 C T FLT1 Missense_Mutation p.E808K 0.07 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TB-01 13 41834938 41834938 C G MTRF1 Missense_Mutation p.D36H 0.18 deleterious_low_confidence(0.03) benign(0.422) TCGA-FD-A6TB-01 14 21971651 21971651 C A METTL3 Nonsense_Mutation p.E130* 0.14 TCGA-FD-A6TB-01 14 21972010 21972010 C T METTL3 Missense_Mutation p.E39K 0.06 tolerated(0.88) benign(0.008) TCGA-FD-A6TB-01 14 24906368 24906368 C G KHNYN Silent p.L638L 0.10 TCGA-FD-A6TB-01 14 38723949 38723949 C T CLEC14A Missense_Mutation p.E427K 0.16 tolerated(1) benign(0) TCGA-FD-A6TB-01 14 45494995 45494995 C G FAM179B Nonsense_Mutation p.S1083* 0.11 TCGA-FD-A6TB-01 14 92958550 92958550 C T SLC24A4 Missense_Mutation p.S561F 0.08 deleterious(0) probably_damaging(0.987) TCGA-FD-A6TB-01 15 34648835 34648835 G A NUTM1 Missense_Mutation p.D848N 0.20 tolerated(0.41) benign(0.001) TCGA-FD-A6TB-01 15 42041627 42041627 C G MGA Missense_Mutation p.S1941C 0.21 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TB-01 15 42042124 42042124 C G MGA Missense_Mutation p.Q2107E 0.22 tolerated_low_confidence(0.06) benign(0.028) TCGA-FD-A6TB-01 15 65849119 65849119 C T PTPLAD1 Nonsense_Mutation p.Q83* 0.28 TCGA-FD-A6TB-01 16 18850010 18850010 G C SMG1 Missense_Mutation p.S2316C 0.07 deleterious(0.01) possibly_damaging(0.87) TCGA-FD-A6TB-01 16 2012533 2012533 G A RPS2 Missense_Mutation p.S225L 0.07 deleterious(0.02) benign(0.257) TCGA-FD-A6TB-01 16 2089867 2089867 G A NTHL1 3'UTR 0.07 TCGA-FD-A6TB-01 16 2129298 2129298 C T TSC2 Silent p.L1051L 0.10 TCGA-FD-A6TB-01 16 2817533 2817533 C G SRRM2 Missense_Mutation p.S2335C 0.12 probably_damaging(0.981) TCGA-FD-A6TB-01 16 2818064 2818064 C G SRRM2 Missense_Mutation p.S2512C 0.15 benign(0.118) TCGA-FD-A6TB-01 16 62055449 62055449 C A CDH8 5'UTR 0.13 TCGA-FD-A6TB-01 16 66998347 66998347 C T CES3 Silent p.F216F 0.23 TCGA-FD-A6TB-01 16 69985254 69985254 C T CLEC18A 5'UTR 0.12 TCGA-FD-A6TB-01 16 83781740 83781740 T C CDH13 Silent p.G569G 0.13 TCGA-FD-A6TB-01 17 15968986 15968986 C G NCOR1 Missense_Mutation p.Q1588H 0.15 probably_damaging(0.993) TCGA-FD-A6TB-01 17 28537652 28537652 C G SLC6A4 Missense_Mutation p.E444Q 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A6TB-01 17 34937960 34937960 C T GGNBP2 Nonsense_Mutation p.Q403* 0.14 TCGA-FD-A6TB-01 17 37866078 37866078 C T ERBB2 Missense_Mutation p.S196F 0.24 deleterious(0.04) benign(0.1) TCGA-FD-A6TB-01 17 37866352 37866352 C A ERBB2 Silent p.V219V 0.13 TCGA-FD-A6TB-01 17 3921190 3921190 C T ZZEF1 Silent p.L2527L 0.17 TCGA-FD-A6TB-01 17 42117556 42117556 G A LSM12 Silent p.V109V 0.19 TCGA-FD-A6TB-01 17 43592074 43592074 C T LRRC37A4P RNA 0.03 TCGA-FD-A6TB-01 17 44248803 44248807 GAATT - KANSL1 Frame_Shift_Del p.N235Hfs*11 0.15 TCGA-FD-A6TB-01 17 53045777 53045777 C G COX11 Silent p.S77S 0.11 TCGA-FD-A6TB-01 17 53124492 53124492 G C STXBP4 Missense_Mutation p.E330Q 0.11 deleterious(0.04) possibly_damaging(0.521) TCGA-FD-A6TB-01 17 55334425 55334425 C T MSI2 Intron 0.10 TCGA-FD-A6TB-01 17 63010910 63010910 C G GNA13 Missense_Mutation p.R200T 0.17 deleterious(0) probably_damaging(0.946) TCGA-FD-A6TB-01 17 6733599 6733599 G A TEKT1 Nonsense_Mutation p.R33* 0.23 TCGA-FD-A6TB-01 17 7227283 7227283 G A NEURL4 Missense_Mutation p.S704F 0.10 deleterious(0) possibly_damaging(0.812) TCGA-FD-A6TB-01 17 72920901 72920901 C T OTOP2 Silent p.Y58Y 0.21 TCGA-FD-A6TB-01 17 73726984 73726984 C T ITGB4 Missense_Mutation p.S344L 0.19 tolerated(0.06) possibly_damaging(0.465) TCGA-FD-A6TB-01 17 79507956 79507956 C G C17orf70 Missense_Mutation p.Q845H 0.26 deleterious(0.02) benign(0.178) TCGA-FD-A6TB-01 18 10539786 10539786 C T NAPG Nonsense_Mutation p.Q96* 0.12 TCGA-FD-A6TB-01 19 11447899 11447899 G C RAB3D Missense_Mutation p.F59L 0.13 deleterious(0) possibly_damaging(0.851) TCGA-FD-A6TB-01 19 11447923 11447923 G A RAB3D Silent p.F51F 0.14 TCGA-FD-A6TB-01 19 14805830 14805830 C T ZNF333 Silent p.V4V 0.19 TCGA-FD-A6TB-01 19 15349899 15349899 C T BRD4 Silent p.E1251E 0.25 TCGA-FD-A6TB-01 19 19168395 19168395 C G ARMC6 Silent p.L488L 0.15 TCGA-FD-A6TB-01 19 21719694 21719694 C T ZNF429 Missense_Mutation p.S280F 0.16 deleterious(0) possibly_damaging(0.788) TCGA-FD-A6TB-01 19 2185876 2185876 G A DOT1L Missense_Mutation p.D50N 0.14 deleterious(0) probably_damaging(0.951) TCGA-FD-A6TB-01 19 44351804 44351804 G C ZNF283 Missense_Mutation p.E351Q 0.11 tolerated(0.36) possibly_damaging(0.822) TCGA-FD-A6TB-01 19 46891833 46891833 G C PPP5C Silent p.R400R 0.08 TCGA-FD-A6TB-01 19 46997203 46997203 G A PNMAL2 Missense_Mutation p.S507L 0.11 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TB-01 19 47259707 47259707 G A FKRP Missense_Mutation p.E334K 0.24 deleterious(0.01) probably_damaging(0.941) TCGA-FD-A6TB-01 19 48602975 48602975 G C PLA2G4C Missense_Mutation p.L144V 0.14 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TB-01 19 48806284 48806284 C T CCDC114 Missense_Mutation p.E316K 0.12 deleterious(0) probably_damaging(0.932) TCGA-FD-A6TB-01 19 50865522 50865522 C T NAPSA Silent p.L44L 0.26 TCGA-FD-A6TB-01 19 55453094 55453094 G A NLRP7 5'UTR 0.12 TCGA-FD-A6TB-01 19 56113616 56113616 C G ZNF524 Silent p.L46L 0.13 TCGA-FD-A6TB-01 19 9048498 9048498 G C MUC16 Missense_Mutation p.L11045V 0.10 benign(0.007) TCGA-FD-A6TB-01 19 9058631 9058631 G T MUC16 Nonsense_Mutation p.Y9605* 0.29 TCGA-FD-A6TB-01 19 9087344 9087344 G A MUC16 Missense_Mutation p.P1491S 0.14 unknown(0) TCGA-FD-A6TB-01 19 9453859 9453859 C A ZNF559 3'UTR 0.16 TCGA-FD-A6TB-01 1 109649635 109649635 G T C1orf194 Missense_Mutation p.T91N 0.11 tolerated(0.3) benign(0.134) TCGA-FD-A6TB-01 1 114391204 114391204 C G PTPN22 Missense_Mutation p.K291N 0.14 deleterious(0) probably_damaging(0.956) TCGA-FD-A6TB-01 1 115118266 115118266 C G BCAS2 Missense_Mutation p.E122Q 0.15 tolerated(0.59) benign(0.053) TCGA-FD-A6TB-01 1 115118317 115118317 C G BCAS2 Missense_Mutation p.E105Q 0.17 tolerated(0.08) possibly_damaging(0.655) TCGA-FD-A6TB-01 1 116663613 116663613 C A MAB21L3 Missense_Mutation p.H37N 0.12 tolerated(0.59) benign(0.045) TCGA-FD-A6TB-01 1 152326888 152326888 G C FLG2 Missense_Mutation p.S1125C 0.13 benign(0.184) TCGA-FD-A6TB-01 1 153066006 153066006 C G SPRR2E 3'UTR 0.09 TCGA-FD-A6TB-01 1 153084988 153084988 C G SPRR2F 3'UTR 0.03 TCGA-FD-A6TB-01 1 155408773 155408773 C T ASH1L Missense_Mutation p.E1725K 0.18 deleterious_low_confidence(0) benign(0.133) TCGA-FD-A6TB-01 1 156851342 156851342 G A NTRK1 Missense_Mutation p.E767K 0.19 deleterious(0) possibly_damaging(0.672) TCGA-FD-A6TB-01 1 160721198 160721198 C G SLAMF7 Missense_Mutation p.S278C 0.13 deleterious(0.04) possibly_damaging(0.906) TCGA-FD-A6TB-01 1 16261743 16261743 C T SPEN Missense_Mutation p.S3003L 0.12 benign(0.003) TCGA-FD-A6TB-01 1 166974525 166974525 G C MAEL Missense_Mutation p.E246Q 0.13 deleterious(0) probably_damaging(0.99) TCGA-FD-A6TB-01 1 171509204 171509204 G C PRRC2C Missense_Mutation p.E865Q 0.16 unknown(0) TCGA-FD-A6TB-01 1 171759640 171759640 C T METTL13 Missense_Mutation p.A453V 0.15 tolerated(0.27) benign(0.004) TCGA-FD-A6TB-01 1 173772540 173772540 G A CENPL Missense_Mutation p.S221L 0.17 tolerated(0.08) benign(0.167) TCGA-FD-A6TB-01 1 176934347 176934347 C T ASTN1 Missense_Mutation p.R517Q 0.12 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FD-A6TB-01 1 200635525 200635525 C T DDX59 Missense_Mutation p.G115E 0.13 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TB-01 1 201982329 201982329 G C ELF3 Missense_Mutation p.K236N 0.16 tolerated(0.09) possibly_damaging(0.791) TCGA-FD-A6TB-01 1 21929365 21929365 C T RAP1GAP Silent p.S554S 0.08 TCGA-FD-A6TB-01 1 220808721 220808721 G A MARK1 Missense_Mutation p.E376K 0.16 deleterious(0.01) benign(0.04) TCGA-FD-A6TB-01 1 223568356 223568356 G C C1orf65 Missense_Mutation p.K513N 0.15 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TB-01 1 228346668 228346668 C A GJC2 Silent p.V403V 0.14 TCGA-FD-A6TB-01 1 24128843 24128843 G A HMGCL 3'UTR 0.21 TCGA-FD-A6TB-01 1 248129018 248129018 C T OR2AK2 Missense_Mutation p.L129F 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-FD-A6TB-01 1 32573724 32573724 G A KPNA6 5'UTR 0.05 TCGA-FD-A6TB-01 1 3390080 3390080 G A ARHGEF16 Silent p.L433L 0.20 TCGA-FD-A6TB-01 1 43395366 43395366 C T SLC2A1 Silent p.K255K 0.07 TCGA-FD-A6TB-01 1 43788382 43788382 G A TIE1 Missense_Mutation p.E1136K 0.14 deleterious(0) probably_damaging(0.959) TCGA-FD-A6TB-01 1 44467181 44467181 C A SLC6A9 Missense_Mutation p.D434Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TB-01 1 89654362 89654362 C G GBP4 Missense_Mutation p.R438T 0.08 tolerated(0.13) benign(0.024) TCGA-FD-A6TB-01 1 89654439 89654439 C G GBP4 Missense_Mutation p.Q412H 0.09 deleterious(0.01) probably_damaging(0.934) TCGA-FD-A6TB-01 1 94671205 94671205 G A ARHGAP29 Missense_Mutation p.S182L 0.07 tolerated(0.54) benign(0.01) TCGA-FD-A6TB-01 20 16316645 16316645 C T KIF16B Missense_Mutation p.E398K 0.10 deleterious(0) possibly_damaging(0.615) TCGA-FD-A6TB-01 20 2816067 2816067 G C PCED1A 3'UTR 0.15 TCGA-FD-A6TB-01 20 31948225 31948225 C G CDK5RAP1 Missense_Mutation p.E539Q 0.05 tolerated(0.21) benign(0.346) TCGA-FD-A6TB-01 20 33842328 33842328 G A MMP24 Silent p.Q196Q 0.33 TCGA-FD-A6TB-01 20 3571898 3571898 C T ATRN Silent p.C1089C 0.06 TCGA-FD-A6TB-01 20 40083271 40083271 C T CHD6 Missense_Mutation p.E1039K 0.16 tolerated(0.21) benign(0.231) TCGA-FD-A6TB-01 20 43723900 43723900 C T KCNS1 Missense_Mutation p.E398K 0.07 deleterious(0.03) probably_damaging(1) TCGA-FD-A6TB-01 20 44207917 44207917 C G WFDC8 5'UTR 0.14 TCGA-FD-A6TB-01 20 47682988 47682988 G C CSE1L Missense_Mutation p.Q139H 0.12 tolerated(0.12) benign(0.006) TCGA-FD-A6TB-01 20 57429130 57429130 G C GNAS Silent p.A270A 0.12 TCGA-FD-A6TB-01 20 58318164 58318164 G A PHACTR3 Missense_Mutation p.E41K 0.08 deleterious(0.01) possibly_damaging(0.585) TCGA-FD-A6TB-01 20 5844156 5844156 G T C20orf196 3'UTR 0.12 TCGA-FD-A6TB-01 20 62129078 62129078 G A EEF1A2 Silent p.I13I 0.10 TCGA-FD-A6TB-01 21 34107329 34107329 C G PAXBP1 Missense_Mutation p.D896H 0.18 deleterious(0) possibly_damaging(0.901) TCGA-FD-A6TB-01 21 34134626 34134626 C T PAXBP1 Missense_Mutation p.E218K 0.17 deleterious(0.03) possibly_damaging(0.655) TCGA-FD-A6TB-01 21 40558947 40558947 A G BRWD1 3'UTR 0.13 TCGA-FD-A6TB-01 21 42748911 42748911 G A MX2 Missense_Mutation p.M26I 0.07 tolerated_low_confidence(0.11) benign(0.005) TCGA-FD-A6TB-01 22 36700135 36700135 C T MYH9 Missense_Mutation p.G766S 0.18 probably_damaging(1) TCGA-FD-A6TB-01 22 36717809 36717809 C T MYH9 Missense_Mutation p.E255K 0.19 possibly_damaging(0.671) TCGA-FD-A6TB-01 22 50506964 50506964 T C MLC1 Missense_Mutation p.I264M 0.14 deleterious_low_confidence(0) benign(0.312) TCGA-FD-A6TB-01 2 1643087 1643087 G A PXDN Missense_Mutation p.R1354W 0.15 deleterious(0.01) benign(0.258) TCGA-FD-A6TB-01 2 168103446 168103446 C T XIRP2 Silent p.L1848L 0.14 TCGA-FD-A6TB-01 2 170387907 170387907 G C FASTKD1 Nonsense_Mutation p.S761* 0.11 TCGA-FD-A6TB-01 2 179449901 179449901 G C TTN Missense_Mutation p.L21524V 0.05 TCGA-FD-A6TB-01 2 183822295 183822295 G A NCKAP1 Silent p.I643I 0.17 TCGA-FD-A6TB-01 2 191524203 191524203 G C NAB1 Missense_Mutation p.E101Q 0.23 deleterious(0.01) benign(0.093) TCGA-FD-A6TB-01 2 191524410 191524410 G A NAB1 Missense_Mutation p.E170K 0.24 deleterious(0.04) probably_damaging(0.984) TCGA-FD-A6TB-01 2 20647344 20647344 G C RHOB Missense_Mutation p.E40Q 0.12 deleterious(0.01) possibly_damaging(0.499) TCGA-FD-A6TB-01 2 20647480 20647480 C T RHOB Missense_Mutation p.S85L 0.08 deleterious(0) possibly_damaging(0.535) TCGA-FD-A6TB-01 2 20647689 20647689 G C RHOB Missense_Mutation p.D155H 0.13 tolerated(0.19) benign(0.008) TCGA-FD-A6TB-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.15 deleterious(0.04) benign(0.233) TCGA-FD-A6TB-01 2 215840688 215840688 G C ABCA12 Missense_Mutation p.I1734M 0.18 tolerated(0.07) possibly_damaging(0.53) TCGA-FD-A6TB-01 2 227660388 227660388 C T IRS1 Missense_Mutation p.E1023K 0.15 tolerated(0.77) benign(0.002) TCGA-FD-A6TB-01 2 241991807 241991807 G A SNED1 Missense_Mutation p.G669R 0.21 deleterious(0.02) probably_damaging(0.967) TCGA-FD-A6TB-01 2 33952684 33952684 G A AC009499.1 Intron 0.19 TCGA-FD-A6TB-01 2 43452225 43452225 C G ZFP36L2 Missense_Mutation p.D240H 0.24 deleterious(0.04) possibly_damaging(0.586) TCGA-FD-A6TB-01 2 48063049 48063049 C T FBXO11 Missense_Mutation p.E227K 0.19 tolerated(0.15) benign(0.026) TCGA-FD-A6TB-01 2 7017886 7017886 G C RSAD2 5'UTR 0.18 TCGA-FD-A6TB-01 2 74757813 74757813 C G HTRA2 Silent p.L192L 0.13 TCGA-FD-A6TB-01 2 79314684 79314684 G C REG1B Missense_Mutation p.L19V 0.23 tolerated(0.5) benign(0.364) TCGA-FD-A6TB-01 2 97427798 97427798 C T CNNM4 Silent p.L354L 0.15 TCGA-FD-A6TB-01 3 108295194 108295194 C T KIAA1524 Splice_Site p.X273_splice 0.10 TCGA-FD-A6TB-01 3 111681118 111681118 G T PHLDB2 Missense_Mutation p.M1012I 0.15 tolerated(0.24) benign(0.011) TCGA-FD-A6TB-01 3 113374152 113374152 G C KIAA2018 Nonsense_Mutation p.S2126* 0.11 TCGA-FD-A6TB-01 3 114057927 114057927 G C ZBTB20 Missense_Mutation p.C717W 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FD-A6TB-01 3 120871362 120871362 G C STXBP5L Missense_Mutation p.W236C 0.08 deleterious(0) probably_damaging(0.95) TCGA-FD-A6TB-01 3 128200071 128200071 C G GATA2 Missense_Mutation p.E412Q 0.17 tolerated(0.08) probably_damaging(0.968) TCGA-FD-A6TB-01 3 136192462 136192462 C T STAG1 Silent p.L348L 0.13 TCGA-FD-A6TB-01 3 138374219 138374219 G A PIK3CB 3'UTR 0.13 TCGA-FD-A6TB-01 3 140401604 140401604 C A TRIM42 Silent p.L214L 0.12 TCGA-FD-A6TB-01 3 167747602 167747602 C G GOLIM4 Missense_Mutation p.E467Q 0.17 tolerated(0.15) benign(0.021) TCGA-FD-A6TB-01 3 182763229 182763229 C A MCCC1 Missense_Mutation p.G352V 0.10 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TB-01 3 184064345 184064345 C T CLCN2 3'UTR 0.14 TCGA-FD-A6TB-01 3 184297327 184297327 C T EPHB3 Missense_Mutation p.R622W 0.06 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TB-01 3 184801134 184801134 A T C3orf70 Nonsense_Mutation p.C138* 0.13 TCGA-FD-A6TB-01 3 196812455 196812455 G A DLG1 Missense_Mutation p.R645C 0.16 deleterious(0) probably_damaging(0.969) TCGA-FD-A6TB-01 3 197241175 197241175 C T BDH1 Silent p.R174R 0.15 TCGA-FD-A6TB-01 3 27183070 27183070 G C NEK10 Nonsense_Mutation p.S1015* 0.18 TCGA-FD-A6TB-01 3 39227951 39227951 G C XIRP1 Missense_Mutation p.Q996E 0.16 deleterious(0.04) benign(0.033) TCGA-FD-A6TB-01 3 42700994 42700994 G A ZBTB47 Missense_Mutation p.E383K 0.26 tolerated_low_confidence(0.43) unknown(0) TCGA-FD-A6TB-01 3 42703079 42703079 G C ZBTB47 Missense_Mutation p.E526Q 0.16 deleterious(0.02) unknown(0) TCGA-FD-A6TB-01 3 46542062 46542062 G C RTP3 Missense_Mutation p.K124N 0.09 deleterious(0) possibly_damaging(0.901) TCGA-FD-A6TB-01 3 48789650 48789650 C G PRKAR2A Missense_Mutation p.R347T 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A6TB-01 3 50295089 50295089 C G GNAI2 Missense_Mutation p.I345M 0.08 deleterious(0.04) benign(0.054) TCGA-FD-A6TB-01 3 8675375 8675375 G A SSUH2 Silent p.L106L 0.31 TCGA-FD-A6TB-01 4 126238718 126238718 C T FAT4 Silent p.D384D 0.14 TCGA-FD-A6TB-01 4 1347046 1347046 C T UVSSA Missense_Mutation p.S260F 0.20 tolerated(0.14) benign(0.003) TCGA-FD-A6TB-01 4 174253085 174253085 C G HMGB2 3'UTR 0.08 TCGA-FD-A6TB-01 4 39409050 39409050 G T KLB Missense_Mutation p.D161Y 0.12 deleterious(0.01) probably_damaging(0.915) TCGA-FD-A6TB-01 4 69433695 69433695 G C UGT2B17 Missense_Mutation p.L170V 0.05 tolerated(1) benign(0.002) TCGA-FD-A6TB-01 4 7774605 7774605 G A AFAP1 Missense_Mutation p.A732V 0.06 deleterious(0) probably_damaging(0.974) TCGA-FD-A6TB-01 4 77941657 77941657 G C SEPT11 Missense_Mutation p.E263Q 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-FD-A6TB-01 4 83348632 83348632 A T HNRNPDL Missense_Mutation p.V287E 0.07 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TB-01 4 941638 941638 C T TMEM175 Silent p.L37L 0.11 TCGA-FD-A6TB-01 5 11199687 11199687 C T CTNND2 Silent p.L616L 0.12 TCGA-FD-A6TB-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.14 TCGA-FD-A6TB-01 5 139221900 139221900 C T PSD2 Silent p.I719I 0.10 TCGA-FD-A6TB-01 5 140515200 140515200 C T PCDHB5 Missense_Mutation p.R62W 0.08 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-FD-A6TB-01 5 146730683 146730683 G T STK32A Missense_Mutation p.Q176H 0.17 tolerated(0.21) benign(0.004) TCGA-FD-A6TB-01 5 149758948 149758948 G A TCOF1 Missense_Mutation p.E879K 0.20 deleterious(0.04) possibly_damaging(0.745) TCGA-FD-A6TB-01 5 180662168 180662168 G C TRIM41 3'UTR 0.17 TCGA-FD-A6TB-01 5 37303498 37303498 C G NUP155 Missense_Mutation p.E1061Q 0.09 deleterious(0.05) probably_damaging(0.951) TCGA-FD-A6TB-01 6 109771575 109771575 C T MICAL1 Silent p.E373E 0.07 TCGA-FD-A6TB-01 6 129419396 129419396 G C LAMA2 Missense_Mutation p.D159H 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A6TB-01 6 134492271 134492271 G C SGK1 Missense_Mutation p.L405V 0.08 deleterious(0.04) possibly_damaging(0.68) TCGA-FD-A6TB-01 6 14135477 14135477 C G CD83 3'UTR 0.10 TCGA-FD-A6TB-01 6 14135522 14135522 C G CD83 3'UTR 0.13 TCGA-FD-A6TB-01 6 146216072 146216072 C G SHPRH Silent p.L1519L 0.15 TCGA-FD-A6TB-01 6 159204664 159204664 G T EZR Missense_Mutation p.Q196K 0.07 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TB-01 6 159205678 159205678 G A EZR Silent p.L183L 0.13 TCGA-FD-A6TB-01 6 26189187 26189187 G A HIST1H4D Missense_Mutation p.R40C 0.09 deleterious(0.03) probably_damaging(0.917) TCGA-FD-A6TB-01 6 29455089 29455089 G C MAS1L Missense_Mutation p.I197M 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-FD-A6TB-01 6 31170271 31170271 G C HCG27 Missense_Mutation p.D83H 0.14 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-FD-A6TB-01 6 31170308 31170308 G C HCG27 Missense_Mutation p.R95T 0.12 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TB-01 6 31170406 31170406 G C HCG27 Missense_Mutation p.D128H 0.11 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TB-01 6 33282841 33282841 G C ZBTB22 Missense_Mutation p.P618R 0.13 tolerated_low_confidence(0.13) benign(0.011) TCGA-FD-A6TB-01 6 42974683 42974683 C G PPP2R5D Missense_Mutation p.I119M 0.09 tolerated(0.24) possibly_damaging(0.882) TCGA-FD-A6TB-01 6 42975720 42975720 C T PPP2R5D Silent p.L258L 0.11 TCGA-FD-A6TB-01 6 42975942 42975942 C T PPP2R5D Silent p.F287F 0.07 TCGA-FD-A6TB-01 6 42978733 42978733 C T PPP2R5D Nonsense_Mutation p.Q557* 0.06 TCGA-FD-A6TB-01 6 42978997 42978997 C T PPP2R5D Silent p.F594F 0.09 TCGA-FD-A6TB-01 6 42979131 42979131 C T PPP2R5D 3'UTR 0.19 TCGA-FD-A6TB-01 6 42980083 42980083 C G MEA1 3'UTR 0.04 TCGA-FD-A6TB-01 6 42980214 42980214 C T MEA1 Nonsense_Mutation p.W184* 0.06 TCGA-FD-A6TB-01 6 46660944 46660944 G C TDRD6 Missense_Mutation p.E1693D 0.08 deleterious(0) probably_damaging(0.928) TCGA-FD-A6TB-01 7 106938618 106938618 C G COG5 Missense_Mutation p.D459H 0.13 deleterious(0) possibly_damaging(0.823) TCGA-FD-A6TB-01 7 107558422 107558422 G C DLD Missense_Mutation p.K430N 0.16 deleterious(0) probably_damaging(0.986) TCGA-FD-A6TB-01 7 141763322 141763322 C T MGAM Silent p.F1427F 0.15 TCGA-FD-A6TB-01 7 143078713 143078713 C T ZYX Missense_Mutation p.P17S 0.14 tolerated(0.12) unknown(0) TCGA-FD-A6TB-01 7 149479352 149479352 C A SSPO RNA 0.17 TCGA-FD-A6TB-01 7 44152430 44152430 C T AEBP1 Missense_Mutation p.R831C 0.15 deleterious(0) probably_damaging(0.973) TCGA-FD-A6TB-01 7 4856876 4856876 G A RADIL Silent p.V574V 0.10 TCGA-FD-A6TB-01 7 5567777 5567777 G C ACTB Missense_Mutation p.S281C 0.12 deleterious_low_confidence(0.01) benign(0.004) TCGA-FD-A6TB-01 7 91730214 91730214 C G AKAP9 Missense_Mutation p.I3647M 0.11 probably_damaging(0.982) TCGA-FD-A6TB-01 8 103664522 103664522 G A KLF10 Missense_Mutation p.S47L 0.12 tolerated(0.08) benign(0.309) TCGA-FD-A6TB-01 8 121219293 121219293 G A COL14A1 Missense_Mutation p.R384K 0.15 tolerated(0.15) probably_damaging(0.997) TCGA-FD-A6TB-01 8 141774497 141774497 G C PTK2 Intron 0.20 TCGA-FD-A6TB-01 8 145737119 145737119 C T RECQL4 Silent p.L1149L 0.15 TCGA-FD-A6TB-01 8 22452129 22452129 G A PDLIM2 3'Flank 0.12 TCGA-FD-A6TB-01 8 28047293 28047293 G C ELP3 3'UTR 0.16 TCGA-FD-A6TB-01 8 28695229 28695229 G A INTS9 Missense_Mutation p.A109V 0.19 deleterious(0) possibly_damaging(0.798) TCGA-FD-A6TB-01 8 42780704 42780704 C G HOOK3 Missense_Mutation p.P50A 0.16 tolerated(0.16) benign(0.001) TCGA-FD-A6TB-01 9 125582281 125582281 G C PDCL 3'UTR 0.20 TCGA-FD-A6TB-01 9 125582396 125582396 G A PDCL Missense_Mutation p.H292Y 0.12 tolerated(1) benign(0.003) TCGA-FD-A6TB-01 9 125582591 125582591 G A PDCL Nonsense_Mutation p.Q227* 0.15 TCGA-FD-A6TB-01 9 125582724 125582724 G A PDCL Silent p.V182V 0.14 TCGA-FD-A6TB-01 9 135776220 135776220 G C TSC1 Nonsense_Mutation p.S836* 0.22 TCGA-FD-A6TB-01 9 27455341 27455341 G T MOB3B Silent p.R70R 0.15 TCGA-FD-A6TB-01 9 5054847 5054847 G A JAK2 Missense_Mutation p.R300K 0.15 tolerated(1) benign(0.004) TCGA-FD-A6TB-01 9 90256923 90256923 G A DAPK1 Missense_Mutation p.A290T 0.18 tolerated(0.29) benign(0.019) TCGA-FD-A6TB-01 9 98729010 98729010 C G ERCC6L2 3'UTR 0.17 TCGA-FD-A6TB-01 X 101911836 101911836 G A GPRASP1 Missense_Mutation p.E999K 0.28 deleterious(0) probably_damaging(0.945) TCGA-FD-A6TB-01 X 128694596 128694596 T C OCRL Silent p.C264C 0.26 TCGA-FD-A6TB-01 X 18936890 18936890 C T PHKA2 Silent p.K682K 0.30 TCGA-FD-A6TC-01 10 102738662 102738662 G T SEMA4G Missense_Mutation p.D234Y 0.43 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 10 102738704 102738704 G A SEMA4G Missense_Mutation p.E248K 0.57 deleterious(0) benign(0.189) TCGA-FD-A6TC-01 10 104176632 104176632 G T PSD Missense_Mutation p.P55H 0.15 deleterious_low_confidence(0.01) benign(0.319) TCGA-FD-A6TC-01 10 104356924 104356924 G C SUFU Missense_Mutation p.D262H 0.21 deleterious(0) possibly_damaging(0.755) TCGA-FD-A6TC-01 10 104632980 104632980 G C AS3MT Missense_Mutation p.D150H 0.29 deleterious(0.03) probably_damaging(0.94) TCGA-FD-A6TC-01 10 112838079 112838079 G A ADRA2A Missense_Mutation p.E109K 0.41 deleterious(0) probably_damaging(0.988) TCGA-FD-A6TC-01 10 114136150 114136150 C G ACSL5 Nonsense_Mutation p.S28* 0.43 TCGA-FD-A6TC-01 10 115978319 115978319 C T TDRD1 Nonsense_Mutation p.Q824* 0.20 TCGA-FD-A6TC-01 10 116417911 116417911 C G ABLIM1 Missense_Mutation p.E17Q 0.08 tolerated_low_confidence(0.05) benign(0.019) TCGA-FD-A6TC-01 10 121541144 121541144 C G INPP5F Intron 0.41 TCGA-FD-A6TC-01 10 123670439 123670439 G T ATE1 Missense_Mutation p.H189N 0.25 tolerated(0.16) benign(0.009) TCGA-FD-A6TC-01 10 123670502 123670502 G A ATE1 Nonsense_Mutation p.Q168* 0.21 TCGA-FD-A6TC-01 10 123730456 123730456 G C NSMCE4A Missense_Mutation p.L167V 0.46 tolerated(0.08) probably_damaging(0.999) TCGA-FD-A6TC-01 10 124008179 124008179 C G TACC2 Nonsense_Mutation p.S2805* 0.13 TCGA-FD-A6TC-01 10 124396713 124396713 C T DMBT1 Missense_Mutation p.S2147F 0.27 deleterious(0) possibly_damaging(0.881) TCGA-FD-A6TC-01 10 129899861 129899861 C T MKI67 Silent p.K3122K 0.20 TCGA-FD-A6TC-01 10 129899866 129899866 C T MKI67 Missense_Mutation p.E3121K 0.21 deleterious(0.03) benign(0.156) TCGA-FD-A6TC-01 10 129906824 129906824 C G MKI67 Missense_Mutation p.E1094Q 0.27 tolerated(0.48) possibly_damaging(0.76) TCGA-FD-A6TC-01 10 129914118 129914118 G C MKI67 Nonsense_Mutation p.S185* 0.46 TCGA-FD-A6TC-01 10 13164482 13164482 G A OPTN Missense_Mutation p.E293K 0.28 tolerated(0.14) benign(0.077) TCGA-FD-A6TC-01 10 135180444 135180444 C G ECHS1 Missense_Mutation p.E190Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TC-01 10 13629043 13629043 G C PRPF18 5'UTR 0.40 TCGA-FD-A6TC-01 10 13655815 13655815 G A PRPF18 Silent p.L218L 0.15 TCGA-FD-A6TC-01 10 17365098 17365098 G C ST8SIA6 Missense_Mutation p.L232V 0.39 deleterious(0.03) benign(0.311) TCGA-FD-A6TC-01 10 18284584 18284584 G A SLC39A12 Splice_Site p.X512_splice 0.17 TCGA-FD-A6TC-01 10 28491177 28491177 G C MPP7 Missense_Mutation p.L21V 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A6TC-01 10 28970347 28970347 C T BAMBI Silent p.I79I 0.30 TCGA-FD-A6TC-01 10 31138723 31138723 C G ZNF438 Missense_Mutation p.R204T 0.20 tolerated(0.59) benign(0.003) TCGA-FD-A6TC-01 10 49609703 49609703 C T MAPK8 5'UTR 0.20 TCGA-FD-A6TC-01 10 50599215 50599215 G A DRGX Nonsense_Mutation p.Q48* 0.50 TCGA-FD-A6TC-01 10 51465115 51465115 G A AGAP7 Silent p.I447I 0.32 TCGA-FD-A6TC-01 10 5808061 5808061 C T GDI2 Missense_Mutation p.D416N 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-FD-A6TC-01 10 60577426 60577426 G C BICC1 Missense_Mutation p.E880Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TC-01 10 6154272 6154272 G C RBM17 Missense_Mutation p.E268D 0.46 deleterious(0.01) probably_damaging(0.947) TCGA-FD-A6TC-01 10 61828856 61828856 T C ANK3 Missense_Mutation p.K3928R 0.46 benign(0.017) TCGA-FD-A6TC-01 10 61830564 61830564 C T ANK3 Missense_Mutation p.E3359K 0.26 benign(0.007) TCGA-FD-A6TC-01 10 65225248 65225248 C T JMJD1C Intron 0.50 TCGA-FD-A6TC-01 10 69881472 69881472 G T MYPN Nonsense_Mutation p.E93* 0.22 TCGA-FD-A6TC-01 10 71392690 71392690 C G C10orf35 Missense_Mutation p.L81V 0.48 tolerated(0.14) benign(0.016) TCGA-FD-A6TC-01 10 75005766 75005766 G A DNAJC9 Nonsense_Mutation p.Q164* 0.43 TCGA-FD-A6TC-01 10 75407381 75407381 G C SYNPO2L Missense_Mutation p.L677V 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-FD-A6TC-01 10 90342933 90342933 C G RNLS Silent p.L5L 0.51 TCGA-FD-A6TC-01 10 91498177 91498177 C A KIF20B Silent p.I1153I 0.25 TCGA-FD-A6TC-01 10 95661187 95661187 C G SLC35G1 Silent p.L346L 0.19 TCGA-FD-A6TC-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.15 TCGA-FD-A6TC-01 10 97023765 97023765 G C PDLIM1 Missense_Mutation p.S130W 0.17 deleterious(0) probably_damaging(0.939) TCGA-FD-A6TC-01 10 97605318 97605318 C T ENTPD1 Nonsense_Mutation p.Q272* 0.18 TCGA-FD-A6TC-01 10 97605351 97605351 C T ENTPD1 Nonsense_Mutation p.Q283* 0.16 TCGA-FD-A6TC-01 10 99130513 99130513 G A RRP12 Missense_Mutation p.S848L 0.42 tolerated(0.1) benign(0.04) TCGA-FD-A6TC-01 10 99349861 99349861 C T C10orf62 Silent p.V69V 0.33 TCGA-FD-A6TC-01 10 99529453 99529453 G C SFRP5 Silent p.L193L 0.38 TCGA-FD-A6TC-01 10 99968562 99968562 G T R3HCC1L Nonsense_Mutation p.E231* 0.25 TCGA-FD-A6TC-01 11 100061879 100061879 G C CNTN5 Silent p.G534G 0.20 TCGA-FD-A6TC-01 11 100095523 100095523 G A CNTN5 Missense_Mutation p.E662K 0.15 tolerated(0.06) probably_damaging(0.969) TCGA-FD-A6TC-01 11 100211890 100211890 G A CNTN5 Missense_Mutation p.E995K 0.31 deleterious(0.01) possibly_damaging(0.676) TCGA-FD-A6TC-01 11 103870789 103870789 C T PDGFD Missense_Mutation p.D107N 0.19 tolerated(0.09) possibly_damaging(0.513) TCGA-FD-A6TC-01 11 105009569 105009569 G A CARD18 Nonsense_Mutation p.Q82* 0.25 TCGA-FD-A6TC-01 11 110479768 110479768 C G ARHGAP20 Missense_Mutation p.E239Q 0.28 tolerated(0.24) probably_damaging(0.927) TCGA-FD-A6TC-01 11 110494936 110494936 C A ARHGAP20 Missense_Mutation p.M151I 0.26 tolerated(0.17) benign(0.013) TCGA-FD-A6TC-01 11 111626023 111626024 - A PPP2R1B Frame_Shift_Ins p.S280Ffs*10 0.18 TCGA-FD-A6TC-01 11 116633686 116633686 G A BUD13 Nonsense_Mutation p.Q207* 0.23 TCGA-FD-A6TC-01 11 118257251 118257251 G C UBE4A Missense_Mutation p.Q844H 0.27 tolerated(0.14) benign(0.008) TCGA-FD-A6TC-01 11 118261425 118261425 C G UBE4A Missense_Mutation p.P948R 0.32 tolerated(0.13) probably_damaging(0.966) TCGA-FD-A6TC-01 11 118940230 118940230 G A VPS11 Missense_Mutation p.E138K 0.53 tolerated(1) benign(0) TCGA-FD-A6TC-01 11 118968249 118968249 C T DPAGT1 Silent p.K310K 0.14 TCGA-FD-A6TC-01 11 119031674 119031674 G A ABCG4 Missense_Mutation p.R600Q 0.25 tolerated(1) benign(0) TCGA-FD-A6TC-01 11 120998643 120998643 G A TECTA Missense_Mutation p.D653N 0.23 tolerated(0.11) benign(0.067) TCGA-FD-A6TC-01 11 123676162 123676162 C T OR6M1 Missense_Mutation p.R299K 0.28 tolerated(0.91) benign(0.012) TCGA-FD-A6TC-01 11 125359541 125359541 C T FEZ1 Missense_Mutation p.E45K 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A6TC-01 11 126147633 126147633 C G FOXRED1 3'UTR 0.36 TCGA-FD-A6TC-01 11 129245917 129245917 C T BARX2 5'UTR 0.42 TCGA-FD-A6TC-01 11 129246023 129246023 C G BARX2 Silent p.L31L 0.25 TCGA-FD-A6TC-01 11 134243663 134243663 G A GLB1L2 Missense_Mutation p.R519K 0.31 tolerated(1) benign(0) TCGA-FD-A6TC-01 11 14280987 14280987 G A RP11-21L19.1 3'Flank 0.31 TCGA-FD-A6TC-01 11 14532480 14532480 C G PSMA1 Missense_Mutation p.V194L 0.33 tolerated(0.05) benign(0.006) TCGA-FD-A6TC-01 11 1579095 1579095 G C DUSP8 Missense_Mutation p.I250M 0.29 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 11 16837796 16837796 C T PLEKHA7 Missense_Mutation p.D628N 0.18 deleterious(0.04) probably_damaging(0.987) TCGA-FD-A6TC-01 11 18732357 18732357 G C IGSF22 Missense_Mutation p.S806C 0.13 tolerated(0.13) probably_damaging(0.935) TCGA-FD-A6TC-01 11 18751007 18751007 G A PTPN5 Nonsense_Mutation p.Q533* 0.24 TCGA-FD-A6TC-01 11 2186583 2186583 C T TH Missense_Mutation p.E436K 0.27 deleterious(0.03) benign(0.063) TCGA-FD-A6TC-01 11 291081 291081 G A ATHL1 Missense_Mutation p.E292K 0.19 deleterious(0.01) possibly_damaging(0.902) TCGA-FD-A6TC-01 11 30352781 30352781 G C ARL14EP Missense_Mutation p.D96H 0.16 tolerated(0.17) benign(0.018) TCGA-FD-A6TC-01 11 31616356 31616356 G A ELP4 Missense_Mutation p.E141K 0.20 tolerated(0.14) benign(0.063) TCGA-FD-A6TC-01 11 31625314 31625314 G C ELP4 Splice_Site p.X172_splice 0.23 TCGA-FD-A6TC-01 11 33370803 33370803 C T HIPK3 Missense_Mutation p.S926F 0.42 deleterious(0) benign(0.01) TCGA-FD-A6TC-01 11 375484 375484 G C B4GALNT4 Silent p.L269L 0.34 TCGA-FD-A6TC-01 11 4471346 4471346 C G OR52K2 Missense_Mutation p.I259M 0.22 deleterious(0) benign(0.133) TCGA-FD-A6TC-01 11 47464360 47464360 C T RAPSN Missense_Mutation p.E180K 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A6TC-01 11 5080583 5080583 C T OR52E2 Missense_Mutation p.R92K 0.16 tolerated(0.22) benign(0.01) TCGA-FD-A6TC-01 11 55419240 55419240 G A OR4S2 Silent p.L287L 0.32 TCGA-FD-A6TC-01 11 55541258 55541258 C T OR5D13 Silent p.F115F 0.28 TCGA-FD-A6TC-01 11 58892225 58892225 G A FAM111B Missense_Mutation p.E219K 0.24 deleterious(0.01) probably_damaging(0.941) TCGA-FD-A6TC-01 11 58893131 58893131 G C FAM111B Missense_Mutation p.E521Q 0.24 tolerated(0.29) benign(0.281) TCGA-FD-A6TC-01 11 58893367 58893367 G C FAM111B Missense_Mutation p.L599F 0.30 tolerated(0.36) benign(0.021) TCGA-FD-A6TC-01 11 59283031 59283031 A G OR4D9 Missense_Mutation p.I216V 0.28 tolerated(0.94) benign(0.002) TCGA-FD-A6TC-01 11 60703933 60703933 C G TMEM132A Missense_Mutation p.Q877E 0.30 deleterious(0.01) probably_damaging(0.96) TCGA-FD-A6TC-01 11 61113841 61113841 G A DAK Missense_Mutation p.E532K 0.26 tolerated(0.26) benign(0.045) TCGA-FD-A6TC-01 11 61505219 61505219 C A DAGLA Silent p.L525L 0.38 TCGA-FD-A6TC-01 11 61631267 61631267 G A FADS2 Intron 0.27 TCGA-FD-A6TC-01 11 62393198 62393198 G A GANAB 3'UTR 0.44 TCGA-FD-A6TC-01 11 62394085 62394085 C T GANAB Missense_Mutation p.M845I 0.24 deleterious(0) probably_damaging(0.917) TCGA-FD-A6TC-01 11 62571417 62571417 C G NXF1 Missense_Mutation p.R21T 0.32 tolerated(0.2) possibly_damaging(0.907) TCGA-FD-A6TC-01 11 62763610 62763610 G T SLC22A8 Missense_Mutation p.S259Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 11 63764070 63764070 C T OTUB1 Silent p.F96F 0.27 TCGA-FD-A6TC-01 11 64331844 64331844 C G SLC22A11 Missense_Mutation p.L296V 0.26 deleterious(0) probably_damaging(0.984) TCGA-FD-A6TC-01 11 64604447 64604447 C T CDC42BPG Missense_Mutation p.R417Q 0.22 tolerated(0.11) benign(0.002) TCGA-FD-A6TC-01 11 65835711 65835711 C T SF3B2 Silent p.T841T 0.13 TCGA-FD-A6TC-01 11 6643176 6643176 G A DCHS1 Missense_Mutation p.S3244F 0.31 deleterious(0) benign(0.18) TCGA-FD-A6TC-01 11 6655029 6655029 C T DCHS1 Missense_Mutation p.E737K 0.30 tolerated(1) benign(0.001) TCGA-FD-A6TC-01 11 66612695 66612695 C G RCE1 Missense_Mutation p.I226M 0.09 deleterious(0.02) probably_damaging(0.94) TCGA-FD-A6TC-01 11 66638843 66638843 C T PC Missense_Mutation p.E144K 0.25 tolerated(0.22) benign(0.034) TCGA-FD-A6TC-01 11 66638949 66638949 C G PC Missense_Mutation p.E108D 0.36 tolerated(0.21) benign(0.03) TCGA-FD-A6TC-01 11 6789272 6789272 C T OR2AG2 Missense_Mutation p.G306E 0.15 deleterious(0.03) benign(0.078) TCGA-FD-A6TC-01 11 77301565 77301565 C G AQP11 Silent p.L176L 0.34 TCGA-FD-A6TC-01 11 77909064 77909064 C T USP35 Silent p.L252L 0.23 TCGA-FD-A6TC-01 11 78176958 78176958 G C NARS2 Missense_Mutation p.F376L 0.25 deleterious(0) probably_damaging(0.991) TCGA-FD-A6TC-01 11 86108702 86108702 G C CCDC81 Missense_Mutation p.E225D 0.23 tolerated(0.11) possibly_damaging(0.69) TCGA-FD-A6TC-01 11 92086113 92086113 G A FAT3 Missense_Mutation p.E279K 0.28 benign(0.297) TCGA-FD-A6TC-01 11 92577710 92577710 G C FAT3 Missense_Mutation p.R3726T 0.41 probably_damaging(0.954) TCGA-FD-A6TC-01 11 92715326 92715326 C T MTNR1B Nonsense_Mutation p.Q313* 0.23 TCGA-FD-A6TC-01 11 94926657 94926657 C G SESN3 Missense_Mutation p.L36F 0.22 tolerated(0.08) benign(0.064) TCGA-FD-A6TC-01 11 9606822 9606822 C T WEE1 Nonsense_Mutation p.R436* 0.17 TCGA-FD-A6TC-01 11 99942518 99942518 G A CNTN5 Missense_Mutation p.E461K 0.46 deleterious(0) possibly_damaging(0.882) TCGA-FD-A6TC-01 12 101687018 101687018 G A UTP20 Missense_Mutation p.E416K 0.23 deleterious(0) possibly_damaging(0.488) TCGA-FD-A6TC-01 12 102154948 102154948 C T GNPTAB Missense_Mutation p.R1031Q 0.24 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 12 102314993 102314993 G C DRAM1 Splice_Site p.X225_splice 0.39 TCGA-FD-A6TC-01 12 102315037 102315037 G A DRAM1 Silent p.%3D 0.35 TCGA-FD-A6TC-01 12 102874167 102874167 G A IGF1 5'UTR 0.33 TCGA-FD-A6TC-01 12 103310950 103310950 C T PAH 5'UTR 0.53 TCGA-FD-A6TC-01 12 10525783 10525783 G A KLRK1 Missense_Mutation p.S194L 0.62 tolerated(0.05) possibly_damaging(0.806) TCGA-FD-A6TC-01 12 109604757 109604757 G A ACACB Missense_Mutation p.E249K 0.11 deleterious(0.01) benign(0.184) TCGA-FD-A6TC-01 12 109895906 109895906 C T KCTD10 Intron 0.26 TCGA-FD-A6TC-01 12 109945373 109945373 C G UBE3B Silent p.L485L 0.20 TCGA-FD-A6TC-01 12 112193515 112193515 C T ACAD10 Missense_Mutation p.S1033F 0.14 tolerated(0.1) benign(0.007) TCGA-FD-A6TC-01 12 112673537 112673537 G T HECTD4 Silent p.L1686L 0.33 TCGA-FD-A6TC-01 12 112674822 112674822 C G HECTD4 Missense_Mutation p.E1645Q 0.33 possibly_damaging(0.561) TCGA-FD-A6TC-01 12 113623133 113623133 C T DDX54 Missense_Mutation p.E42K 1.00 deleterious_low_confidence(0.03) benign(0.22) TCGA-FD-A6TC-01 12 113756801 113756801 C T SLC8B1 Missense_Mutation p.G257E 0.27 tolerated(0.87) benign(0.001) TCGA-FD-A6TC-01 12 113907101 113907101 C A LHX5 Missense_Mutation p.D75Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 12 114374848 114374848 C T RBM19 Missense_Mutation p.E678K 0.11 tolerated(0.35) benign(0.002) TCGA-FD-A6TC-01 12 120189920 120189920 G A CIT Missense_Mutation p.R947C 0.38 deleterious(0.02) possibly_damaging(0.517) TCGA-FD-A6TC-01 12 120650123 120650123 G C PXN Missense_Mutation p.F604L 0.24 deleterious(0) probably_damaging(0.91) TCGA-FD-A6TC-01 12 120884457 120884457 C T GATC Intron 0.40 TCGA-FD-A6TC-01 12 122689105 122689105 C T B3GNT4 5'UTR 0.17 TCGA-FD-A6TC-01 12 122864940 122864940 G - CLIP1 Frame_Shift_Del p.S20Rfs*4 0.15 TCGA-FD-A6TC-01 12 123465031 123465031 G A ARL6IP4 Missense_Mutation p.E33K 0.57 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TC-01 12 123821017 123821017 C G SBNO1 Missense_Mutation p.D225H 0.27 deleterious(0) benign(0.008) TCGA-FD-A6TC-01 12 129559354 129559354 C G TMEM132D Missense_Mutation p.G789A 0.20 deleterious(0) possibly_damaging(0.55) TCGA-FD-A6TC-01 12 13061780 13061780 C T GPRC5A Silent p.F199F 0.56 TCGA-FD-A6TC-01 12 132198698 132198698 G A SFSWAP Missense_Mutation p.E101K 0.16 deleterious(0.01) possibly_damaging(0.805) TCGA-FD-A6TC-01 12 133291561 133291561 C T PGAM5 Silent p.I103I 0.41 TCGA-FD-A6TC-01 12 19489492 19489492 A G PLEKHA5 Missense_Mutation p.D831G 0.70 deleterious(0.04) probably_damaging(0.999) TCGA-FD-A6TC-01 12 2016692 2016692 G A CACNA2D4 Missense_Mutation p.A232V 0.57 tolerated(0.06) benign(0.016) TCGA-FD-A6TC-01 12 27817316 27817316 C T PPFIBP1 Nonsense_Mutation p.R330* 0.33 TCGA-FD-A6TC-01 12 31255897 31255897 C T DDX11 Silent p.F800F 0.32 TCGA-FD-A6TC-01 12 39705303 39705303 G - KIF21A Frame_Shift_Del p.Q1338Sfs*5 0.21 TCGA-FD-A6TC-01 12 42853452 42853452 C G PRICKLE1 3'UTR 0.50 TCGA-FD-A6TC-01 12 44189314 44189314 G C TWF1 3'UTR 0.33 TCGA-FD-A6TC-01 12 4440448 4440448 G A C12orf5 Missense_Mutation p.G12E 0.20 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TC-01 12 48962884 48962884 G A LALBA Silent p.I91I 0.40 TCGA-FD-A6TC-01 12 49421090 49421090 C G KMT2D Missense_Mutation p.E4887Q 0.32 unknown(0) TCGA-FD-A6TC-01 12 49425638 49425638 G A KMT2D Nonsense_Mutation p.Q4284* 0.50 TCGA-FD-A6TC-01 12 49431769 49431769 C T KMT2D Missense_Mutation p.E3124K 0.33 possibly_damaging(0.708) TCGA-FD-A6TC-01 12 49496679 49496679 G C LMBR1L Silent p.V229V 0.34 TCGA-FD-A6TC-01 12 50197707 50197707 C G NCKAP5L Missense_Mutation p.E41Q 0.24 tolerated(0.15) probably_damaging(0.999) TCGA-FD-A6TC-01 12 50349308 50349308 G A AQP2 Missense_Mutation p.D245N 0.15 deleterious(0.04) possibly_damaging(0.787) TCGA-FD-A6TC-01 12 50821605 50821605 C G LARP4 Missense_Mutation p.P27A 0.18 tolerated(0.46) benign(0.001) TCGA-FD-A6TC-01 12 51834570 51834570 G C SLC4A8 Missense_Mutation p.E43Q 0.26 deleterious(0.05) probably_damaging(0.986) TCGA-FD-A6TC-01 12 52774311 52774311 G A KRT84 Silent p.L420L 0.34 TCGA-FD-A6TC-01 12 53693683 53693683 C G C12orf10 Missense_Mutation p.F54L 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-FD-A6TC-01 12 53702581 53702581 C G AAAS Missense_Mutation p.D339H 0.18 deleterious(0.01) probably_damaging(0.921) TCGA-FD-A6TC-01 12 53714432 53714432 C G AAAS Missense_Mutation p.K56N 0.20 tolerated(0.05) probably_damaging(0.969) TCGA-FD-A6TC-01 12 53715294 53715294 G A AAAS 5'UTR 0.20 TCGA-FD-A6TC-01 12 53804935 53804935 G C SP1 Missense_Mutation p.E757Q 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-FD-A6TC-01 12 55361654 55361654 C G TESPA1 Missense_Mutation p.E77Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-FD-A6TC-01 12 56151241 56151241 G A SARNP 3'UTR 0.26 TCGA-FD-A6TC-01 12 56552274 56552274 G C MYL6 Intron 0.19 TCGA-FD-A6TC-01 12 56552414 56552414 G C MYL6 Intron 0.29 TCGA-FD-A6TC-01 12 56555034 56555034 C T MYL6 Intron 0.31 TCGA-FD-A6TC-01 12 56663999 56663999 C G COQ10A Silent p.V214V 0.35 TCGA-FD-A6TC-01 12 56664100 56664100 G C COQ10A Nonstop_Mutation p.*248Sext*69 0.39 TCGA-FD-A6TC-01 12 57058199 57058199 C G PTGES3 3'UTR 0.36 TCGA-FD-A6TC-01 12 57578202 57578202 C T LRP1 Silent p.I2051I 0.21 TCGA-FD-A6TC-01 12 57587017 57587017 C G LRP1 Missense_Mutation p.I2538M 0.20 probably_damaging(0.954) TCGA-FD-A6TC-01 12 57870234 57870234 C T ARHGAP9 Silent p.K343K 0.15 TCGA-FD-A6TC-01 12 58002422 58002422 C T DTX3 Silent p.L290L 0.49 TCGA-FD-A6TC-01 12 58177060 58177060 C G RP11-571M6.15 Missense_Mutation p.Q82E 0.28 deleterious(0.02) benign(0.01) TCGA-FD-A6TC-01 12 63543729 63543729 G A AVPR1A Silent p.I296I 0.33 TCGA-FD-A6TC-01 12 63954291 63954291 C G DPY19L2 3'UTR 0.14 TCGA-FD-A6TC-01 12 64061846 64061846 G C DPY19L2 Missense_Mutation p.L110V 0.31 tolerated(0.32) benign(0.005) TCGA-FD-A6TC-01 12 6436467 6436468 AC - PLEKHG6 Frame_Shift_Del p.T574Rfs*2 0.29 TCGA-FD-A6TC-01 12 644426 644426 G A B4GALNT3 Silent p.L88L 0.58 TCGA-FD-A6TC-01 12 64456784 64456784 G A SRGAP1 Missense_Mutation p.E297K 0.39 tolerated(0.11) benign(0.109) TCGA-FD-A6TC-01 12 6458367 6458367 G C SCNN1A Missense_Mutation p.S546C 0.12 deleterious(0) probably_damaging(0.944) TCGA-FD-A6TC-01 12 64588269 64588269 C G C12orf66 Missense_Mutation p.E231Q 0.42 tolerated(1) benign(0.032) TCGA-FD-A6TC-01 12 64813958 64813958 G A XPOT Missense_Mutation p.E200K 0.15 tolerated(0.08) probably_damaging(0.936) TCGA-FD-A6TC-01 12 6669861 6669861 C T NOP2 Intron 0.12 TCGA-FD-A6TC-01 12 6709556 6709556 C T CHD4 Missense_Mutation p.E357K 0.19 tolerated(0.75) benign(0.006) TCGA-FD-A6TC-01 12 69135668 69135668 C G NUP107 Missense_Mutation p.L860V 0.17 deleterious(0.01) possibly_damaging(0.856) TCGA-FD-A6TC-01 12 6952801 6952801 C G GNB3 Missense_Mutation p.L146V 0.42 tolerated(0.11) benign(0.221) TCGA-FD-A6TC-01 12 6973993 6973993 C T USP5 Silent p.I784I 0.38 TCGA-FD-A6TC-01 12 6981922 6981922 C T SPSB2 Nonsense_Mutation p.W48* 0.37 TCGA-FD-A6TC-01 12 7015816 7015816 G A LRRC23 Silent p.L160L 0.30 TCGA-FD-A6TC-01 12 71286737 71286737 C T PTPRR Missense_Mutation p.D27N 0.38 deleterious_low_confidence(0.01) benign(0.091) TCGA-FD-A6TC-01 12 7519883 7519883 C T CD163L1 Missense_Mutation p.E1410K 0.31 deleterious(0.03) benign(0.338) TCGA-FD-A6TC-01 12 7525940 7525940 C G CD163L1 Missense_Mutation p.E1236Q 0.64 deleterious(0.04) probably_damaging(0.971) TCGA-FD-A6TC-01 12 77253407 77253407 T C CSRP2 Missense_Mutation p.N142S 0.16 tolerated(1) benign(0.003) TCGA-FD-A6TC-01 12 80658968 80658968 C T OTOGL Silent p.F725F 0.40 TCGA-FD-A6TC-01 12 8085603 8085603 G C SLC2A3 Silent p.L83L 0.41 TCGA-FD-A6TC-01 12 85266437 85266437 C T SLC6A15 Missense_Mutation p.E416K 0.41 tolerated(0.78) benign(0.009) TCGA-FD-A6TC-01 12 86198764 86198764 C T RASSF9 Missense_Mutation p.E342K 0.13 deleterious(0.01) possibly_damaging(0.748) TCGA-FD-A6TC-01 12 939308 939308 C T WNK1 Silent p.I431I 0.40 TCGA-FD-A6TC-01 12 94542913 94542913 G A PLXNC1 Missense_Mutation p.G56S 0.52 tolerated(0.32) benign(0.2) TCGA-FD-A6TC-01 12 97112230 97112230 C G C12orf55 Nonsense_Mutation p.S2245* 0.23 TCGA-FD-A6TC-01 12 99061345 99061345 C G APAF1 Missense_Mutation p.L473V 0.42 tolerated(0.2) benign(0.097) TCGA-FD-A6TC-01 12 99640066 99640066 G C ANKS1B Missense_Mutation p.S778W 0.24 deleterious(0) probably_damaging(0.989) TCGA-FD-A6TC-01 13 100037588 100037588 G A UBAC2 Silent p.%3D 0.20 TCGA-FD-A6TC-01 13 103316028 103316028 G C TPP2 Missense_Mutation p.L1045F 0.19 deleterious(0.02) probably_damaging(0.971) TCGA-FD-A6TC-01 13 111926179 111926179 C A ARHGEF7 Missense_Mutation p.F385L 0.12 deleterious(0.02) probably_damaging(0.953) TCGA-FD-A6TC-01 13 114018197 114018197 C G GRTP1 Missense_Mutation p.E21Q 0.50 tolerated(0.07) benign(0.439) TCGA-FD-A6TC-01 13 114150077 114150077 C T TMCO3 Missense_Mutation p.L61F 0.21 tolerated(0.1) possibly_damaging(0.742) TCGA-FD-A6TC-01 13 24844946 24844946 C A SPATA13 Intron 0.44 TCGA-FD-A6TC-01 13 25008886 25008886 G T PARP4 Missense_Mutation p.Q1465K 0.53 tolerated(0.81) benign(0.038) TCGA-FD-A6TC-01 13 25745184 25745184 G A AMER2 Missense_Mutation p.R192W 0.28 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 13 27257036 27257036 G A WASF3 Missense_Mutation p.E426K 0.15 tolerated(0.13) benign(0.242) TCGA-FD-A6TC-01 13 28498541 28498541 G C PDX1 Missense_Mutation p.L185F 0.24 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 13 30346273 30346273 G A UBL3 Silent p.L67L 0.17 TCGA-FD-A6TC-01 13 32914137 32914137 C G BRCA2 Nonsense_Mutation p.S1882* 0.35 TCGA-FD-A6TC-01 13 37603968 37603968 C G SUPT20H Missense_Mutation p.E309D 0.31 tolerated(0.09) benign(0.007) TCGA-FD-A6TC-01 13 38211283 38211283 C T TRPC4 Silent p.L902L 0.42 TCGA-FD-A6TC-01 13 48941633 48941633 G T RB1 Nonsense_Mutation p.E315* 0.43 TCGA-FD-A6TC-01 13 49796261 49796261 G C MLNR Missense_Mutation p.M329I 0.28 tolerated(0.35) benign(0.345) TCGA-FD-A6TC-01 13 50108069 50108069 G C RCBTB1 3'UTR 0.44 TCGA-FD-A6TC-01 13 77847640 77847640 G T MYCBP2 Silent p.T266T 0.53 TCGA-FD-A6TC-01 13 86368698 86368698 C T SLITRK6 Missense_Mutation p.R649K 0.16 tolerated(0.57) benign(0.01) TCGA-FD-A6TC-01 13 86368708 86368708 C T SLITRK6 Missense_Mutation p.E646K 0.15 tolerated(0.72) possibly_damaging(0.51) TCGA-FD-A6TC-01 13 95131237 95131237 G A DCT Silent p.F91F 0.15 TCGA-FD-A6TC-01 13 98086841 98086841 C A RAP2A Missense_Mutation p.F39L 0.37 tolerated(0.09) probably_damaging(0.997) TCGA-FD-A6TC-01 14 102548585 102548585 T A HSP90AA1 Missense_Mutation p.E773V 0.06 tolerated_low_confidence(0.05) unknown(0) TCGA-FD-A6TC-01 14 102548586 102548586 C G HSP90AA1 Missense_Mutation p.E773Q 0.06 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A6TC-01 14 102792847 102792847 C G ZNF839 Missense_Mutation p.L272V 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 14 102843233 102843233 C G TECPR2 Missense_Mutation p.L59V 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-FD-A6TC-01 14 103412833 103412833 G C CDC42BPB Missense_Mutation p.I1240M 0.14 deleterious(0.02) possibly_damaging(0.594) TCGA-FD-A6TC-01 14 103442094 103442094 G C CDC42BPB Silent p.L478L 0.20 TCGA-FD-A6TC-01 14 104490993 104490993 C T TDRD9 Silent p.L898L 0.44 TCGA-FD-A6TC-01 14 106173580 106173580 G A IGHA1 Silent p.I329I 0.17 TCGA-FD-A6TC-01 14 106173591 106173591 G A IGHA1 Nonsense_Mutation p.Q326* 0.19 TCGA-FD-A6TC-01 14 22205254 22205254 C T TRAV4 Silent p.L106L 0.26 TCGA-FD-A6TC-01 14 23521245 23521245 C T CDH24 Missense_Mutation p.E471K 0.33 tolerated(0.38) benign(0) TCGA-FD-A6TC-01 14 24438015 24438015 G A DHRS4 Missense_Mutation p.E258K 0.31 tolerated(0.12) possibly_damaging(0.676) TCGA-FD-A6TC-01 14 24709349 24709349 G C TINF2 Missense_Mutation p.S381C 0.26 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-FD-A6TC-01 14 50292663 50292663 G C NEMF Nonsense_Mutation p.S500* 0.24 TCGA-FD-A6TC-01 14 52781333 52781333 G A PTGER2 Missense_Mutation p.E23K 0.26 tolerated(0.35) benign(0.155) TCGA-FD-A6TC-01 14 61278789 61278789 G A MNAT1 Missense_Mutation p.E169K 0.30 tolerated(0.07) possibly_damaging(0.822) TCGA-FD-A6TC-01 14 64699843 64699843 C T ESR2 3'UTR 0.17 TCGA-FD-A6TC-01 14 67768754 67768754 G C MPP5 Missense_Mutation p.E240D 0.23 tolerated(0.71) benign(0) TCGA-FD-A6TC-01 14 68217631 68217631 C G ZFYVE26 Intron 0.60 TCGA-FD-A6TC-01 14 89075708 89075708 C G ZC3H14 Missense_Mutation p.H656D 0.53 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 14 93708797 93708797 G A BTBD7 Missense_Mutation p.S1074L 0.27 tolerated_low_confidence(0.21) benign(0.001) TCGA-FD-A6TC-01 14 95579508 95579508 C T DICER1 Missense_Mutation p.R654K 0.48 tolerated(1) benign(0.002) TCGA-FD-A6TC-01 14 95910912 95910912 C A SYNE3 Missense_Mutation p.R562S 0.46 tolerated(0.13) benign(0.004) TCGA-FD-A6TC-01 14 99871582 99871582 C T SETD3 Missense_Mutation p.A351T 0.13 deleterious(0) possibly_damaging(0.606) TCGA-FD-A6TC-01 15 100692958 100692958 G C ADAMTS17 Silent p.V444V 0.11 TCGA-FD-A6TC-01 15 23326585 23326585 G A HERC2P2 RNA 0.18 TCGA-FD-A6TC-01 15 31324991 31324991 C A TRPM1 Silent p.V968V 0.28 TCGA-FD-A6TC-01 15 34130053 34130053 G A RYR3 Missense_Mutation p.E3958K 0.17 probably_damaging(0.981) TCGA-FD-A6TC-01 15 34647751 34647751 C T NUTM1 Silent p.F486F 0.18 TCGA-FD-A6TC-01 15 39544329 39544329 G C C15orf54 5'UTR 0.17 TCGA-FD-A6TC-01 15 41222831 41222831 C T DLL4 Silent p.F115F 0.29 TCGA-FD-A6TC-01 15 43483714 43483714 C G CCNDBP1 Nonsense_Mutation p.S234* 0.34 TCGA-FD-A6TC-01 15 43620869 43620869 G A LCMT2 Missense_Mutation p.H607Y 0.15 tolerated(0.07) possibly_damaging(0.707) TCGA-FD-A6TC-01 15 43661301 43661301 C T ZSCAN29 Missense_Mutation p.E115K 0.14 deleterious(0.03) benign(0.003) TCGA-FD-A6TC-01 15 44630079 44630079 C G CASC4 Nonsense_Mutation p.S232* 0.47 TCGA-FD-A6TC-01 15 44955822 44955822 C G SPG11 Silent p.A8A 0.50 TCGA-FD-A6TC-01 15 48434439 48434439 G A SLC24A5 Missense_Mutation p.R465K 0.40 tolerated(0.84) benign(0.006) TCGA-FD-A6TC-01 15 49031133 49031133 G A CEP152 Silent p.L1482L 0.25 TCGA-FD-A6TC-01 15 49048221 49048221 G A CEP152 Missense_Mutation p.S1075L 0.51 tolerated(0.26) benign(0.21) TCGA-FD-A6TC-01 15 49309206 49309206 C T SECISBP2L Missense_Mutation p.D420N 0.42 tolerated(0.45) benign(0.029) TCGA-FD-A6TC-01 15 51012155 51012155 C G SPPL2A Missense_Mutation p.W490C 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 15 52356491 52356491 C G MAPK6 Missense_Mutation p.S487C 0.26 deleterious_low_confidence(0.04) benign(0.125) TCGA-FD-A6TC-01 15 57543601 57543601 G A TCF12 Missense_Mutation p.E390K 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 15 66048633 66048633 G C DENND4A Missense_Mutation p.I52M 0.42 tolerated(0.05) benign(0.215) TCGA-FD-A6TC-01 15 68468819 68468819 G C PIAS1 Missense_Mutation p.L436F 0.22 tolerated(0.71) benign(0.013) TCGA-FD-A6TC-01 15 70961667 70961667 G A UACA Silent p.F452F 0.46 TCGA-FD-A6TC-01 15 72120270 72120270 C T MYO9A Missense_Mutation p.E2380K 0.17 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TC-01 15 73615460 73615460 T C HCN4 Missense_Mutation p.S992G 0.39 tolerated_low_confidence(0.52) unknown(0) TCGA-FD-A6TC-01 15 77096936 77096936 G A SCAPER Silent p.F144F 0.21 TCGA-FD-A6TC-01 15 80767519 80767519 G A ARNT2 Missense_Mutation p.E193K 0.23 deleterious(0.03) possibly_damaging(0.621) TCGA-FD-A6TC-01 15 80872783 80872783 G A ARNT2 Missense_Mutation p.D549N 0.19 tolerated_low_confidence(0.49) possibly_damaging(0.811) TCGA-FD-A6TC-01 15 83333623 83333623 C T AP3B2 Missense_Mutation p.E682K 0.44 tolerated(0.06) possibly_damaging(0.784) TCGA-FD-A6TC-01 15 89417122 89417122 G A ACAN Silent p.Q2461Q 0.12 TCGA-FD-A6TC-01 15 89758308 89758308 C T RLBP1 Missense_Mutation p.E170K 0.16 tolerated(0.08) possibly_damaging(0.481) TCGA-FD-A6TC-01 15 90164630 90164630 G A TICRR Missense_Mutation p.R1054K 0.27 tolerated(0.32) benign(0.132) TCGA-FD-A6TC-01 15 91347468 91347468 G C BLM Missense_Mutation p.Q1210H 0.24 deleterious(0) possibly_damaging(0.77) TCGA-FD-A6TC-01 15 91453335 91453335 C T MAN2A2 Missense_Mutation p.L464F 0.06 deleterious(0) probably_damaging(0.915) TCGA-FD-A6TC-01 15 93492410 93492410 C G CHD2 Intron 0.48 TCGA-FD-A6TC-01 16 11873143 11873143 G - ZC3H7A Frame_Shift_Del p.S62* 0.17 TCGA-FD-A6TC-01 16 14340937 14340937 G A MKL2 Missense_Mutation p.R607Q 0.30 deleterious(0.03) benign(0.411) TCGA-FD-A6TC-01 16 15812202 15812202 C G MYH11 Missense_Mutation p.M1762I 0.33 benign(0.002) TCGA-FD-A6TC-01 16 15813102 15813102 C G MYH11 Missense_Mutation p.E1723Q 0.41 probably_damaging(0.999) TCGA-FD-A6TC-01 16 16215848 16215848 C T ABCC1 Missense_Mutation p.S1136F 0.29 deleterious(0) possibly_damaging(0.76) TCGA-FD-A6TC-01 16 16259687 16259687 G T ABCC6 Silent p.I1033I 0.22 TCGA-FD-A6TC-01 16 1810453 1810453 G T MAPK8IP3 Silent p.L458L 0.19 TCGA-FD-A6TC-01 16 18826958 18826958 G C SMG1 Missense_Mutation p.L3440V 0.35 tolerated(0.1) probably_damaging(0.936) TCGA-FD-A6TC-01 16 2014461 2014461 C T RPS2 Missense_Mutation p.E56K 0.52 tolerated(0.14) benign(0.205) TCGA-FD-A6TC-01 16 20975126 20975126 G A DNAH3 Silent p.N3360N 0.20 TCGA-FD-A6TC-01 16 21151926 21151926 G T DNAH3 Silent p.L209L 0.44 TCGA-FD-A6TC-01 16 21629339 21629339 C T METTL9 Silent p.I170I 0.41 TCGA-FD-A6TC-01 16 22579939 22579939 C G RP11-368J21.3 RNA 0.19 TCGA-FD-A6TC-01 16 22826091 22826091 C T HS3ST2 Missense_Mutation p.R54C 0.18 tolerated(0.06) benign(0.001) TCGA-FD-A6TC-01 16 24564833 24564833 G C RBBP6 Splice_Site p.X102_splice 0.21 TCGA-FD-A6TC-01 16 27375102 27375102 A G IL4R Missense_Mutation p.K810R 0.43 tolerated(0.16) benign(0.003) TCGA-FD-A6TC-01 16 27375139 27375139 G A IL4R Missense_Mutation p.M822I 0.47 tolerated(0.22) benign(0.005) TCGA-FD-A6TC-01 16 27549623 27549623 C G GTF3C1 Missense_Mutation p.L162F 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 16 2813061 2813061 G A SRRM2 Silent p.V844V 0.41 TCGA-FD-A6TC-01 16 2819244 2819244 C T SRRM2 Silent p.P2660P 0.21 TCGA-FD-A6TC-01 16 28508289 28508289 G A APOBR Missense_Mutation p.D643N 0.33 tolerated(0.13) possibly_damaging(0.741) TCGA-FD-A6TC-01 16 28617150 28617150 C G SULT1A1 Missense_Mutation p.E294Q 0.05 tolerated(0.19) benign(0.001) TCGA-FD-A6TC-01 16 29858704 29858704 C T MVP Nonsense_Mutation p.Q818* 0.21 TCGA-FD-A6TC-01 16 29993016 29993016 G A TAOK2 Silent p.A230A 0.14 TCGA-FD-A6TC-01 16 30005108 30005108 C T HIRIP3 Missense_Mutation p.E421K 0.24 deleterious(0.03) possibly_damaging(0.759) TCGA-FD-A6TC-01 16 30005806 30005806 C T HIRIP3 Silent p.L220L 0.20 TCGA-FD-A6TC-01 16 30596747 30596747 G A ZNF785 Silent p.F62F 0.18 TCGA-FD-A6TC-01 16 30667399 30667399 C - PRR14 Frame_Shift_Del p.L509* 0.22 TCGA-FD-A6TC-01 16 3452170 3452170 G A ZNF174 Missense_Mutation p.E56K 0.20 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 16 3632361 3632361 C T SLX4 Silent p.K1829K 0.43 TCGA-FD-A6TC-01 16 3778370 3778370 C T CREBBP Silent p.A2226A 0.35 TCGA-FD-A6TC-01 16 3828043 3828043 C T CREBBP Silent p.V694V 0.45 TCGA-FD-A6TC-01 16 4408479 4408479 G A CORO7 Silent p.L782L 0.32 TCGA-FD-A6TC-01 16 47189480 47189480 C G ITFG1 3'UTR 0.40 TCGA-FD-A6TC-01 16 47683100 47683100 G A PHKB Silent p.L594L 0.20 TCGA-FD-A6TC-01 16 48396344 48396344 G C SIAH1 Intron 0.18 TCGA-FD-A6TC-01 16 4922908 4922908 G A UBN1 Missense_Mutation p.R577Q 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-FD-A6TC-01 16 51175814 51175814 G C SALL1 Missense_Mutation p.Q107E 0.24 tolerated(0.42) benign(0.002) TCGA-FD-A6TC-01 16 624745 624745 C T PIGQ Missense_Mutation p.S224L 0.69 deleterious(0.03) possibly_damaging(0.834) TCGA-FD-A6TC-01 16 65397159 65397159 G A LINC00922 RNA 0.76 TCGA-FD-A6TC-01 16 67318961 67318961 C T PLEKHG4 Missense_Mutation p.R680W 0.11 deleterious(0.02) benign(0.033) TCGA-FD-A6TC-01 16 67322136 67322136 C G PLEKHG4 Missense_Mutation p.S1096W 0.06 tolerated(0.09) benign(0.016) TCGA-FD-A6TC-01 16 67670708 67670708 G C CTCF Silent p.R651R 0.08 TCGA-FD-A6TC-01 16 67694193 67694193 C G ACD Silent p.P63P 0.06 TCGA-FD-A6TC-01 16 67974011 67974011 C A LCAT Silent p.A373A 0.10 TCGA-FD-A6TC-01 16 68943159 68943159 G A TANGO6 Missense_Mutation p.E616K 0.15 tolerated(0.67) benign(0.001) TCGA-FD-A6TC-01 16 68961657 68961657 C T TANGO6 Silent p.L772L 0.13 TCGA-FD-A6TC-01 16 70400148 70400148 G C DDX19A Missense_Mutation p.Q255H 0.72 tolerated(0.05) possibly_damaging(0.671) TCGA-FD-A6TC-01 16 70590867 70590867 G A SF3B3 Missense_Mutation p.E649K 0.04 tolerated(0.48) benign(0.009) TCGA-FD-A6TC-01 16 818678 818678 G C MSLN Missense_Mutation p.G613A 0.24 tolerated(0.31) unknown(0) TCGA-FD-A6TC-01 16 82182360 82182360 C G MPHOSPH6 Missense_Mutation p.K153N 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-FD-A6TC-01 16 848685 848685 C T GNG13 3'UTR 0.40 TCGA-FD-A6TC-01 16 87902652 87902652 G C SLC7A5 Missense_Mutation p.S126W 0.09 deleterious(0) probably_damaging(0.987) TCGA-FD-A6TC-01 16 89348646 89348646 C G ANKRD11 Missense_Mutation p.R1435T 0.39 probably_damaging(0.918) TCGA-FD-A6TC-01 16 89590413 89590413 G A SPG7 Splice_Site p.X126_splice 0.65 TCGA-FD-A6TC-01 16 89590431 89590431 G A SPG7 Missense_Mutation p.E132K 0.45 tolerated(0.15) benign(0.009) TCGA-FD-A6TC-01 16 89590493 89590493 G A SPG7 Missense_Mutation p.M152I 0.40 tolerated(0.22) benign(0.062) TCGA-FD-A6TC-01 16 984235 984235 C G LMF1 Intron 0.14 TCGA-FD-A6TC-01 17 10253988 10253988 G A MYH13 Silent p.F343F 0.12 TCGA-FD-A6TC-01 17 10368023 10368023 G T MYH4 Missense_Mutation p.R170S 0.59 deleterious(0.01) probably_damaging(0.957) TCGA-FD-A6TC-01 17 10432905 10432905 G C MYH2 Missense_Mutation p.I1031M 0.19 tolerated(0.09) benign(0.03) TCGA-FD-A6TC-01 17 1340297 1340297 C G CRK Missense_Mutation p.E132Q 0.25 tolerated(0.16) benign(0.227) TCGA-FD-A6TC-01 17 1399357 1399357 G A INPP5K Silent p.F429F 0.75 TCGA-FD-A6TC-01 17 17106239 17106239 C G PLD6 Missense_Mutation p.E201Q 0.48 tolerated(0.08) probably_damaging(0.954) TCGA-FD-A6TC-01 17 18653133 18653133 C G FBXW10 Missense_Mutation p.L257V 0.16 tolerated(0.13) benign(0.033) TCGA-FD-A6TC-01 17 21217609 21217609 C T MAP2K3 3'UTR 0.22 TCGA-FD-A6TC-01 17 25748817 25748817 C T TBC1D3P5 RNA 0.62 TCGA-FD-A6TC-01 17 31618696 31618696 G C ASIC2 Silent p.L146L 0.20 TCGA-FD-A6TC-01 17 3181432 3181432 G A OR3A2 Silent p.F266F 0.15 TCGA-FD-A6TC-01 17 33288560 33288560 G C ZNF830 5'UTR 0.21 TCGA-FD-A6TC-01 17 33289264 33289264 G A ZNF830 Missense_Mutation p.E227K 0.13 tolerated(0.62) benign(0.164) TCGA-FD-A6TC-01 17 33806509 33806509 G A SLFN12L Silent p.L240L 0.37 TCGA-FD-A6TC-01 17 33902993 33902993 G C PEX12 Silent p.L296L 0.34 TCGA-FD-A6TC-01 17 35348108 35348108 G A AATF Silent p.L450L 0.39 TCGA-FD-A6TC-01 17 37580964 37580964 G T MED1 Nonsense_Mutation p.S256* 0.14 TCGA-FD-A6TC-01 17 38151284 38151284 C G PSMD3 Silent p.L353L 0.10 TCGA-FD-A6TC-01 17 38991060 38991060 C T TMEM99 Missense_Mutation p.P98S 0.08 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-FD-A6TC-01 17 38991526 38991526 C G TMEM99 Missense_Mutation p.S253C 0.12 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-FD-A6TC-01 17 39661818 39661818 G A KRT13 5'UTR 0.78 TCGA-FD-A6TC-01 17 4084577 4084577 C G ANKFY1 Missense_Mutation p.E780Q 0.10 tolerated(0.12) benign(0.188) TCGA-FD-A6TC-01 17 40927450 40927450 G A VPS25 Missense_Mutation p.R102Q 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-FD-A6TC-01 17 42478797 42478797 G C GPATCH8 Missense_Mutation p.F216L 0.19 tolerated(0.37) probably_damaging(0.996) TCGA-FD-A6TC-01 17 43910817 43910817 G A CRHR1 Splice_Site p.X311_splice 0.25 TCGA-FD-A6TC-01 17 45663005 45663005 G A NPEPPS Missense_Mutation p.G263D 0.63 deleterious(0.01) possibly_damaging(0.833) TCGA-FD-A6TC-01 17 47039091 47039091 C A GIP Missense_Mutation p.Q116H 0.70 tolerated(0.08) possibly_damaging(0.541) TCGA-FD-A6TC-01 17 47115536 47115536 C G IGF2BP1 Missense_Mutation p.I136M 0.18 tolerated(0.12) benign(0.271) TCGA-FD-A6TC-01 17 48072302 48072302 T A DLX3 Missense_Mutation p.S21C 0.71 deleterious(0.01) possibly_damaging(0.869) TCGA-FD-A6TC-01 17 49052212 49052212 A G SPAG9 Missense_Mutation p.I1207T 0.19 deleterious(0) possibly_damaging(0.52) TCGA-FD-A6TC-01 17 54981706 54981706 C T TRIM25 Silent p.Q279Q 0.69 TCGA-FD-A6TC-01 17 56690860 56690860 G A TEX14 Silent p.L315L 0.60 TCGA-FD-A6TC-01 17 57232376 57232376 G C SKA2 Intron 0.12 TCGA-FD-A6TC-01 17 59147240 59147240 G A BCAS3 Intron 0.65 TCGA-FD-A6TC-01 17 61898226 61898226 C G FTSJ3 Missense_Mutation p.R682T 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 17 62007163 62007163 G A CD79B Silent p.F173F 0.69 TCGA-FD-A6TC-01 17 62859015 62859015 C G LRRC37A3 Intron 0.19 TCGA-FD-A6TC-01 17 65907937 65907937 G C BPTF Missense_Mutation p.E1313Q 0.64 benign(0.06) TCGA-FD-A6TC-01 17 72541012 72541012 C G CD300C Missense_Mutation p.E46Q 0.69 tolerated(0.15) possibly_damaging(0.824) TCGA-FD-A6TC-01 17 72927104 72927104 C T OTOP2 Silent p.S458S 0.19 TCGA-FD-A6TC-01 17 73106677 73106677 G A ARMC7 Missense_Mutation p.E71K 0.67 deleterious(0.02) possibly_damaging(0.616) TCGA-FD-A6TC-01 17 73235514 73235514 C T GGA3 Silent p.P574P 0.19 TCGA-FD-A6TC-01 17 7385590 7385590 G A SLC35G6 Missense_Mutation p.G96E 0.19 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 17 74732170 74732170 C G SRSF2 3'UTR 0.21 TCGA-FD-A6TC-01 17 74732266 74732266 C T SRSF2 Missense_Mutation p.E215K 0.19 deleterious(0.02) unknown(0) TCGA-FD-A6TC-01 17 7476049 7476049 G C SENP3 3'Flank 0.75 TCGA-FD-A6TC-01 17 7536092 7536092 C A SHBG Nonsense_Mutation p.S292* 0.72 TCGA-FD-A6TC-01 17 7577509 7577509 C T TP53 Missense_Mutation p.E258K 0.74 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 17 76113593 76113593 C G TMC6 Silent p.L718L 0.36 TCGA-FD-A6TC-01 17 76832341 76832341 G A USP36 Silent p.V35V 0.56 TCGA-FD-A6TC-01 17 7751700 7751700 C T KDM6B Silent p.I698I 0.75 TCGA-FD-A6TC-01 17 80887029 80887029 G A TBCD Missense_Mutation p.E912K 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 18 13095581 13095581 C G CEP192 Missense_Mutation p.L2112V 0.24 deleterious(0.03) possibly_damaging(0.487) TCGA-FD-A6TC-01 18 19996428 19996428 T C CTAGE1 Silent p.E449E 0.15 TCGA-FD-A6TC-01 18 20573069 20573069 G C RBBP8 Missense_Mutation p.D427H 0.56 deleterious(0) benign(0.399) TCGA-FD-A6TC-01 18 21483086 21483086 G A LAMA3 Silent p.Q2105Q 0.56 TCGA-FD-A6TC-01 18 24081214 24081214 C T KCTD1 Intron 0.13 TCGA-FD-A6TC-01 18 25591885 25591885 C T CDH2 Silent p.Q157Q 0.17 TCGA-FD-A6TC-01 18 2769785 2769785 G C SMCHD1 Missense_Mutation p.E1605Q 0.64 tolerated(0.46) benign(0.193) TCGA-FD-A6TC-01 18 28919963 28919963 C G DSG1 Silent p.L554L 0.12 TCGA-FD-A6TC-01 18 28956889 28956889 C T DSG4 Silent p.F5F 0.16 TCGA-FD-A6TC-01 18 2909774 2909774 C G EMILIN2 Missense_Mutation p.N927K 0.61 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 18 32418083 32418083 G A DTNA Intron 0.18 TCGA-FD-A6TC-01 18 32621700 32621700 G A MAPRE2 Intron 0.38 TCGA-FD-A6TC-01 18 34802108 34802108 C G KIAA1328 Nonsense_Mutation p.S551* 0.65 TCGA-FD-A6TC-01 18 52899786 52899786 C G TCF4 Missense_Mutation p.D637H 0.12 deleterious(0) possibly_damaging(0.615) TCGA-FD-A6TC-01 18 56363632 56363632 A C MALT1 Silent p.A137A 0.21 TCGA-FD-A6TC-01 18 56585532 56585532 G A ZNF532 Missense_Mutation p.D5N 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 18 56586165 56586165 G A ZNF532 Missense_Mutation p.E216K 0.14 tolerated(0.11) benign(0.013) TCGA-FD-A6TC-01 18 61558726 61558726 C G SERPINB2 Missense_Mutation p.F16L 0.17 tolerated(0.3) benign(0.198) TCGA-FD-A6TC-01 18 63547805 63547805 G A CDH7 Missense_Mutation p.R678Q 0.21 tolerated(0.23) benign(0.075) TCGA-FD-A6TC-01 18 7050704 7050704 C G LAMA1 Missense_Mutation p.E193Q 0.29 deleterious(0) probably_damaging(0.976) TCGA-FD-A6TC-01 18 9117862 9117862 G C NDUFV2 Missense_Mutation p.K27N 0.62 tolerated(0.25) benign(0.048) TCGA-FD-A6TC-01 19 10403751 10403751 G T ICAM5 Nonsense_Mutation p.E432* 0.11 TCGA-FD-A6TC-01 19 10745483 10745483 C T SLC44A2 Missense_Mutation p.S292F 0.61 deleterious(0.01) probably_damaging(0.921) TCGA-FD-A6TC-01 19 10745899 10745899 C T SLC44A2 Silent p.C372C 0.56 TCGA-FD-A6TC-01 19 10747142 10747142 C T SLC44A2 Silent p.F459F 0.60 TCGA-FD-A6TC-01 19 10747183 10747183 C T SLC44A2 Missense_Mutation p.A473V 0.51 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 19 10748914 10748916 TTC - SLC44A2 In_Frame_Del p.F621del 0.12 TCGA-FD-A6TC-01 19 1095360 1095360 G C POLR2E 5'UTR 0.48 TCGA-FD-A6TC-01 19 11888423 11888423 C A ZNF441 Intron 0.41 TCGA-FD-A6TC-01 19 1272166 1272166 C T CIRBP Intron 0.36 TCGA-FD-A6TC-01 19 12735496 12735496 C T ZNF791 Nonsense_Mutation p.Q55* 0.23 TCGA-FD-A6TC-01 19 12829933 12829933 G C TNPO2 Missense_Mutation p.Q79E 0.17 tolerated(0.82) benign(0) TCGA-FD-A6TC-01 19 1440439 1440439 C T RPS15 Missense_Mutation p.S139F 0.16 deleterious(0) benign(0.07) TCGA-FD-A6TC-01 19 14583491 14583491 G A PTGER1 Missense_Mutation p.R364C 0.22 tolerated(0.08) unknown(0) TCGA-FD-A6TC-01 19 15302346 15302346 C T NOTCH3 Missense_Mutation p.E309K 0.35 tolerated(0.11) possibly_damaging(0.487) TCGA-FD-A6TC-01 19 15342072 15342072 G C EPHX3 Missense_Mutation p.I155M 0.32 deleterious(0) possibly_damaging(0.799) TCGA-FD-A6TC-01 19 15534033 15534033 C G WIZ Missense_Mutation p.E747Q 0.38 tolerated(0.06) benign(0.121) TCGA-FD-A6TC-01 19 1615480 1615480 C G TCF3 Missense_Mutation p.Q542H 0.28 deleterious(0.02) benign(0.005) TCGA-FD-A6TC-01 19 17322481 17322481 G A MYO9B Missense_Mutation p.E1986K 0.38 tolerated(0.09) probably_damaging(0.998) TCGA-FD-A6TC-01 19 17439116 17439116 C G ANO8 Missense_Mutation p.G694A 0.54 tolerated(0.32) unknown(0) TCGA-FD-A6TC-01 19 18956812 18956812 G A UPF1 Silent p.Q85Q 0.22 TCGA-FD-A6TC-01 19 19459713 19459713 G A MAU2 Missense_Mutation p.E442K 0.28 tolerated(0.31) possibly_damaging(0.725) TCGA-FD-A6TC-01 19 20727948 20727948 G A ZNF737 Missense_Mutation p.S354L 0.29 deleterious(0.01) possibly_damaging(0.685) TCGA-FD-A6TC-01 19 21131623 21131623 G C ZNF85 Silent p.L101L 0.27 TCGA-FD-A6TC-01 19 2114270 2114270 G C AP3D1 Missense_Mutation p.Q819E 0.29 tolerated(0.92) benign(0.022) TCGA-FD-A6TC-01 19 21606210 21606210 C G ZNF493 Nonsense_Mutation p.S250* 0.40 TCGA-FD-A6TC-01 19 21608614 21608614 C G ZNF493 3'UTR 0.25 TCGA-FD-A6TC-01 19 2222543 2222543 C T DOT1L Silent p.L1125L 0.37 TCGA-FD-A6TC-01 19 23159333 23159333 G C ZNF728 Nonsense_Mutation p.S269* 0.44 TCGA-FD-A6TC-01 19 23159417 23159417 G C ZNF728 Nonsense_Mutation p.S241* 0.41 TCGA-FD-A6TC-01 19 23159676 23159676 G C ZNF728 Missense_Mutation p.H155D 0.49 tolerated(0.06) possibly_damaging(0.681) TCGA-FD-A6TC-01 19 2328566 2328566 C G LSM7 5'UTR 0.44 TCGA-FD-A6TC-01 19 23545343 23545343 G T ZNF91 Silent p.L146L 0.11 TCGA-FD-A6TC-01 19 2790547 2790547 G A THOP1 Missense_Mutation p.D49N 0.21 tolerated(0.09) benign(0.081) TCGA-FD-A6TC-01 19 2877756 2877756 C T ZNF556 Missense_Mutation p.A267V 0.40 tolerated(0.11) benign(0.284) TCGA-FD-A6TC-01 19 311857 311857 G C MIER2 Missense_Mutation p.I324M 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 19 33110220 33110220 G A ANKRD27 Silent p.F651F 0.15 TCGA-FD-A6TC-01 19 35715765 35715765 G A FAM187B Missense_Mutation p.P358L 0.24 tolerated(0.68) benign(0.005) TCGA-FD-A6TC-01 19 35758631 35758631 C G LSR Silent p.L636L 0.20 TCGA-FD-A6TC-01 19 3612400 3612400 C T CACTIN Missense_Mutation p.E600K 0.31 tolerated(0.18) possibly_damaging(0.571) TCGA-FD-A6TC-01 19 3623860 3623860 C T CACTIN Silent p.L156L 0.26 TCGA-FD-A6TC-01 19 3651926 3651926 G A PIP5K1C Missense_Mutation p.S342L 0.27 tolerated(0.23) benign(0.007) TCGA-FD-A6TC-01 19 37210006 37210006 C T ZNF567 Missense_Mutation p.S96L 0.14 tolerated(0.13) benign(0.001) TCGA-FD-A6TC-01 19 37854568 37854568 G C HKR1 Missense_Mutation p.R624T 0.17 tolerated(0.47) benign(0.348) TCGA-FD-A6TC-01 19 37903715 37903715 G A ZNF569 Silent p.F615F 0.24 TCGA-FD-A6TC-01 19 39321735 39321735 C G ECH1 Missense_Mutation p.G111A 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-FD-A6TC-01 19 39322115 39322115 G A ECH1 Missense_Mutation p.R32C 0.22 tolerated_low_confidence(0.05) benign(0.035) TCGA-FD-A6TC-01 19 39421891 39421891 C G MRPS12 5'UTR 0.20 TCGA-FD-A6TC-01 19 39963659 39963659 C T SUPT5H Silent p.I721I 0.13 TCGA-FD-A6TC-01 19 40478350 40478350 G C PSMC4 Missense_Mutation p.K70N 0.24 tolerated(0.19) benign(0.005) TCGA-FD-A6TC-01 19 40514444 40514444 G C ZNF546 Missense_Mutation p.M122I 0.48 tolerated(0.22) benign(0.019) TCGA-FD-A6TC-01 19 40580041 40580041 G C ZNF780A 3'UTR 0.14 TCGA-FD-A6TC-01 19 41352950 41352950 C G CYP2A6 Missense_Mutation p.E221Q 0.41 probably_damaging(0.971) TCGA-FD-A6TC-01 19 41759558 41759558 G A AXL Missense_Mutation p.E661K 0.29 deleterious(0) probably_damaging(0.91) TCGA-FD-A6TC-01 19 4207588 4207588 C G ANKRD24 Missense_Mutation p.Q210E 0.20 deleterious(0.03) benign(0.197) TCGA-FD-A6TC-01 19 42085806 42085806 C G CEACAM21 Missense_Mutation p.F175L 0.33 deleterious(0.02) benign(0.18) TCGA-FD-A6TC-01 19 42729049 42729049 C T ZNF526 Missense_Mutation p.S165F 0.43 deleterious(0.04) benign(0.168) TCGA-FD-A6TC-01 19 42729170 42729170 C G ZNF526 Silent p.L205L 0.45 TCGA-FD-A6TC-01 19 42730256 42730256 C G ZNF526 Silent p.L567L 0.40 TCGA-FD-A6TC-01 19 42730645 42730645 C G ZNF526 3'UTR 0.58 TCGA-FD-A6TC-01 19 44030385 44030385 C G ETHE1 Missense_Mutation p.E115Q 0.45 tolerated(0.2) benign(0.007) TCGA-FD-A6TC-01 19 44051123 44051123 G T XRCC1 Silent p.L402L 0.42 TCGA-FD-A6TC-01 19 44934685 44934685 G C ZNF229 Missense_Mutation p.Q91E 0.24 tolerated(0.13) benign(0.037) TCGA-FD-A6TC-01 19 4528979 4528979 G A PLIN5 Intron 0.30 TCGA-FD-A6TC-01 19 46289456 46289456 G A DMWD Missense_Mutation p.S433L 0.25 deleterious(0) possibly_damaging(0.857) TCGA-FD-A6TC-01 19 47181744 47181744 G A PRKD2 Silent p.F749F 0.27 TCGA-FD-A6TC-01 19 48342841 48342841 G C CRX Missense_Mutation p.E173Q 0.33 tolerated(0.1) benign(0.025) TCGA-FD-A6TC-01 19 49131269 49131269 G A SPHK2 Silent p.L233L 0.20 TCGA-FD-A6TC-01 19 49901326 49901326 G C CCDC155 Silent p.R185R 0.19 TCGA-FD-A6TC-01 19 50213740 50213740 G A CPT1C Missense_Mutation p.R577Q 0.15 deleterious(0.01) benign(0.043) TCGA-FD-A6TC-01 19 50812965 50812965 C T MYH14 Missense_Mutation p.S2010F 0.38 deleterious(0.01) unknown(0) TCGA-FD-A6TC-01 19 51301399 51301399 G A C19orf48 Missense_Mutation p.P103S 0.30 tolerated_low_confidence(0.1) possibly_damaging(0.803) TCGA-FD-A6TC-01 19 51379980 51379980 C T KLK2 Silent p.Y153Y 0.27 TCGA-FD-A6TC-01 19 51452183 51452183 G T KLK5 Missense_Mutation p.S175Y 0.34 deleterious(0) probably_damaging(0.984) TCGA-FD-A6TC-01 19 51875520 51875520 G A NKG7 Silent p.L67L 0.19 TCGA-FD-A6TC-01 19 52825486 52825486 C T ZNF480 Missense_Mutation p.S328L 0.45 deleterious(0) possibly_damaging(0.489) TCGA-FD-A6TC-01 19 53302357 53302357 G T ZNF28 3'UTR 0.21 TCGA-FD-A6TC-01 19 53456122 53456122 C G ZNF816 Missense_Mutation p.L24F 0.17 deleterious(0) possibly_damaging(0.513) TCGA-FD-A6TC-01 19 53573394 53573394 G A ZNF160 Silent p.F131F 0.19 TCGA-FD-A6TC-01 19 53885290 53885290 G A ZNF525 3'UTR 0.20 TCGA-FD-A6TC-01 19 53945946 53945946 G A TPM3P9 RNA 0.38 TCGA-FD-A6TC-01 19 53958118 53958118 G C ZNF761 RNA 0.25 TCGA-FD-A6TC-01 19 53994290 53994290 G C ZNF813 Missense_Mutation p.E268D 0.19 deleterious(0.02) benign(0.113) TCGA-FD-A6TC-01 19 54257275 54257275 C G MIR527 RNA 0.39 TCGA-FD-A6TC-01 19 54377206 54377208 CTT - MYADM In_Frame_Del p.F143del 0.24 TCGA-FD-A6TC-01 19 54377329 54377329 C T MYADM Silent p.F182F 0.25 TCGA-FD-A6TC-01 19 54417765 54417765 G A CACNG7 Missense_Mutation p.G70S 0.43 deleterious(0.01) probably_damaging(1) TCGA-FD-A6TC-01 19 54617841 54617841 C T TFPT Missense_Mutation p.R88H 0.13 deleterious(0.03) benign(0.067) TCGA-FD-A6TC-01 19 54621692 54621692 G A PRPF31 Missense_Mutation p.E12K 0.25 deleterious(0.01) unknown(0) TCGA-FD-A6TC-01 19 54720935 54720935 G A LILRB3 3'UTR 0.36 TCGA-FD-A6TC-01 19 548596 548596 C G GZMM Silent p.L89L 0.19 TCGA-FD-A6TC-01 19 56896200 56896200 C G ZNF582 Missense_Mutation p.E196Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 19 57802323 57802323 G A ZNF460 Missense_Mutation p.M138I 0.42 deleterious(0.03) benign(0.012) TCGA-FD-A6TC-01 19 57839521 57839521 G A ZNF543 Missense_Mutation p.E231K 0.21 deleterious(0.03) possibly_damaging(0.692) TCGA-FD-A6TC-01 19 57929280 57929280 G C AC003002.6 Missense_Mutation p.D18H 0.24 deleterious(0.01) possibly_damaging(0.749) TCGA-FD-A6TC-01 19 58198932 58198932 G A ZNF551 Missense_Mutation p.C430Y 0.21 tolerated(1) benign(0.361) TCGA-FD-A6TC-01 19 58601374 58601374 C G ZSCAN18 Missense_Mutation p.Q143H 0.46 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 19 58966888 58966888 G A ZNF324B Missense_Mutation p.E193K 0.17 tolerated(0.75) benign(0.002) TCGA-FD-A6TC-01 19 6926454 6926454 G C EMR1 Silent p.V688V 0.19 TCGA-FD-A6TC-01 19 7083354 7083354 G C ZNF557 Missense_Mutation p.G298R 0.20 deleterious(0.03) probably_damaging(0.993) TCGA-FD-A6TC-01 19 7083411 7083411 G A ZNF557 Missense_Mutation p.E317K 0.24 deleterious(0) possibly_damaging(0.765) TCGA-FD-A6TC-01 19 7571014 7571014 C G C19orf45 Silent p.L390L 0.48 TCGA-FD-A6TC-01 19 8555372 8555372 G A PRAM1 Missense_Mutation p.A643V 0.44 tolerated(0.07) probably_damaging(0.999) TCGA-FD-A6TC-01 19 9076314 9076314 G C MUC16 Missense_Mutation p.S3711C 0.07 unknown(0) TCGA-FD-A6TC-01 19 9452837 9452837 G C ZNF559 Missense_Mutation p.G237A 0.15 tolerated(0.71) benign(0.033) TCGA-FD-A6TC-01 1 101704732 101704732 C G S1PR1 Missense_Mutation p.I64M 0.46 deleterious(0.03) benign(0.099) TCGA-FD-A6TC-01 1 102312417 102312417 G C OLFM3 Intron 0.31 TCGA-FD-A6TC-01 1 108185292 108185292 G A VAV3 Silent p.A621A 0.54 TCGA-FD-A6TC-01 1 109533888 109533888 C A WDR47 Silent p.S593S 0.20 TCGA-FD-A6TC-01 1 110257596 110257596 G A GSTM5 Missense_Mutation p.E130K 0.25 tolerated(0.56) benign(0.005) TCGA-FD-A6TC-01 1 110882083 110882083 C G RBM15 Missense_Mutation p.A19G 0.41 tolerated_low_confidence(0.49) benign(0) TCGA-FD-A6TC-01 1 115218575 115218575 C G AMPD1 Missense_Mutation p.E513Q 0.23 tolerated(0.07) probably_damaging(0.99) TCGA-FD-A6TC-01 1 11589724 11589724 C A PTCHD2 Missense_Mutation p.F970L 0.14 tolerated_low_confidence(0.31) benign(0.021) TCGA-FD-A6TC-01 1 117544479 117544479 C G CD101 Missense_Mutation p.L14V 0.37 tolerated(0.18) benign(0.08) TCGA-FD-A6TC-01 1 117638919 117638919 C G TTF2 Missense_Mutation p.Q1062E 0.18 deleterious(0.03) benign(0.204) TCGA-FD-A6TC-01 1 118009029 118009029 G C MAN1A2 Missense_Mutation p.R383T 0.25 tolerated(0.37) benign(0.016) TCGA-FD-A6TC-01 1 118616569 118616569 C G SPAG17 Missense_Mutation p.E765Q 0.14 tolerated(0.16) possibly_damaging(0.69) TCGA-FD-A6TC-01 1 1260008 1260008 G A CPSF3L 5'Flank 0.12 TCGA-FD-A6TC-01 1 13001162 13001162 C G PRAMEF6 Missense_Mutation p.R174T 0.17 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 1 144917543 144917543 C G PDE4DIP Missense_Mutation p.E521Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TC-01 1 1455664 1455664 C G ATAD3A Missense_Mutation p.Q268E 0.09 tolerated(0.56) benign(0.034) TCGA-FD-A6TC-01 1 146055373 146055373 C G NBPF11 Missense_Mutation p.E138Q 0.18 deleterious(0.02) benign(0.278) TCGA-FD-A6TC-01 1 146658815 146658815 C G FMO5 Missense_Mutation p.E422D 0.28 tolerated(0.56) benign(0.008) TCGA-FD-A6TC-01 1 150280534 150280534 G T MRPS21 Nonsense_Mutation p.E46* 0.28 TCGA-FD-A6TC-01 1 150724422 150724422 C T CTSS Silent p.L154L 0.43 TCGA-FD-A6TC-01 1 150786623 150786623 G C ARNT Silent p.L681L 0.24 TCGA-FD-A6TC-01 1 151749052 151749052 G A TDRKH Missense_Mutation p.H303Y 0.45 tolerated(0.05) benign(0.098) TCGA-FD-A6TC-01 1 151774080 151774080 G A LINGO4 Silent p.L367L 0.30 TCGA-FD-A6TC-01 1 151783891 151783891 C A RORC Missense_Mutation p.E435D 0.16 tolerated(0.34) benign(0.002) TCGA-FD-A6TC-01 1 152080115 152080115 C G TCHH Missense_Mutation p.E1860Q 0.32 benign(0.07) TCGA-FD-A6TC-01 1 152082231 152082231 C T TCHH Silent p.L1154L 0.14 TCGA-FD-A6TC-01 1 153965509 153965509 G C NUP210L Missense_Mutation p.L1850V 0.34 tolerated(0.47) benign(0.002) TCGA-FD-A6TC-01 1 154474046 154474046 G C SHE Missense_Mutation p.Q153E 0.40 deleterious(0.01) benign(0.293) TCGA-FD-A6TC-01 1 155231482 155231482 G C SCAMP3 Missense_Mutation p.T37R 0.12 tolerated(0.09) probably_damaging(0.97) TCGA-FD-A6TC-01 1 155247568 155247568 C T HCN3 Missense_Mutation p.R63W 0.46 deleterious(0) probably_damaging(0.978) TCGA-FD-A6TC-01 1 155291023 155291023 C G RUSC1 Intron 0.69 TCGA-FD-A6TC-01 1 155291105 155291105 C G RUSC1 Intron 0.41 TCGA-FD-A6TC-01 1 155291536 155291536 C T RUSC1 5'UTR 0.13 TCGA-FD-A6TC-01 1 155317560 155317560 C G ASH1L Missense_Mutation p.E2564Q 0.15 tolerated_low_confidence(0.07) probably_damaging(0.98) TCGA-FD-A6TC-01 1 15541733 15541733 G C TMEM51 Missense_Mutation p.K50N 0.18 tolerated(0.28) benign(0.311) TCGA-FD-A6TC-01 1 156039504 156039504 C G RAB25 Missense_Mutation p.S159C 0.40 deleterious_low_confidence(0.01) benign(0.114) TCGA-FD-A6TC-01 1 156756618 156756618 C G PRCC Missense_Mutation p.I245M 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TC-01 1 156815774 156815774 C T INSRR Missense_Mutation p.D650N 0.36 tolerated(0.19) possibly_damaging(0.669) TCGA-FD-A6TC-01 1 1575811 1575811 G A CDK11B Missense_Mutation p.P363S 0.25 unknown(0) TCGA-FD-A6TC-01 1 157737531 157737531 C G FCRL2 Intron 0.44 TCGA-FD-A6TC-01 1 159825827 159825827 G C VSIG8 Missense_Mutation p.L273V 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-FD-A6TC-01 1 160793322 160793322 C G LY9 Silent p.L522L 0.20 TCGA-FD-A6TC-01 1 16091681 16091681 G A FBLIM1 Missense_Mutation p.R68K 0.20 tolerated(0.42) benign(0.001) TCGA-FD-A6TC-01 1 161017655 161017655 G C ARHGAP30 Silent p.L1052L 0.37 TCGA-FD-A6TC-01 1 161017828 161017828 G C ARHGAP30 Missense_Mutation p.L995V 0.31 deleterious(0.03) probably_damaging(0.996) TCGA-FD-A6TC-01 1 161026213 161026213 G C ARHGAP30 Missense_Mutation p.P104A 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 1 161043069 161043069 C T PVRL4 Silent p.L418L 0.40 TCGA-FD-A6TC-01 1 16202978 16202978 G A SPEN Missense_Mutation p.R229Q 0.24 probably_damaging(0.99) TCGA-FD-A6TC-01 1 16203032 16203032 C T SPEN Missense_Mutation p.S247L 0.15 probably_damaging(0.989) TCGA-FD-A6TC-01 1 16462252 16462252 C T EPHA2 Silent p.V442V 0.20 TCGA-FD-A6TC-01 1 165533028 165533028 G A LRRC52 Silent p.T303T 0.14 TCGA-FD-A6TC-01 1 16632383 16632383 C T FBXO42 Missense_Mutation p.M94I 0.14 tolerated(0.94) benign(0) TCGA-FD-A6TC-01 1 168215777 168215777 C T SFT2D2 3'UTR 0.26 TCGA-FD-A6TC-01 1 16907973 16907973 C T NBPF1 Missense_Mutation p.E441K 0.06 tolerated(0.07) probably_damaging(0.992) TCGA-FD-A6TC-01 1 16916404 16916404 C G NBPF1 Missense_Mutation p.E90Q 0.08 deleterious(0.05) possibly_damaging(0.607) TCGA-FD-A6TC-01 1 170043582 170043582 G A KIFAP3 Silent p.L9L 0.35 TCGA-FD-A6TC-01 1 171765686 171765686 C G METTL13 Silent p.L630L 0.17 TCGA-FD-A6TC-01 1 17328814 17328814 G A ATP13A2 Silent p.L204L 0.42 TCGA-FD-A6TC-01 1 179054980 179054980 C G TOR3A Missense_Mutation p.F197L 0.19 deleterious(0.03) possibly_damaging(0.717) TCGA-FD-A6TC-01 1 179337977 179337977 C T AXDND1 Missense_Mutation p.S47L 0.24 tolerated(0.22) benign(0.01) TCGA-FD-A6TC-01 1 180063734 180063734 G A CEP350 Missense_Mutation p.D2832N 0.31 probably_damaging(0.994) TCGA-FD-A6TC-01 1 180257422 180257422 G C ACBD6 3'UTR 0.50 TCGA-FD-A6TC-01 1 180794031 180794031 C T XPR1 Silent p.I302I 0.39 TCGA-FD-A6TC-01 1 19513096 19513096 G A UBR4 Missense_Mutation p.S563F 0.41 possibly_damaging(0.849) TCGA-FD-A6TC-01 1 197404123 197404123 C T CRB1 Missense_Mutation p.P1044S 0.23 deleterious(0.02) probably_damaging(1) TCGA-FD-A6TC-01 1 198723443 198723443 C G PTPRC Silent p.L1185L 0.29 TCGA-FD-A6TC-01 1 198723483 198723483 C G PTPRC Missense_Mutation p.Q1199E 0.25 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 1 200708958 200708958 G A CAMSAP2 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) possibly_damaging(0.544) TCGA-FD-A6TC-01 1 200971448 200971448 C T KIF21B Missense_Mutation p.E415K 0.32 deleterious(0) benign(0.152) TCGA-FD-A6TC-01 1 20141655 20141655 C T RNF186 5'UTR 0.33 TCGA-FD-A6TC-01 1 201981202 201981202 G C ELF3 Missense_Mutation p.R94P 0.42 tolerated(0.21) probably_damaging(0.973) TCGA-FD-A6TC-01 1 201982405 201982405 G C ELF3 Missense_Mutation p.E262Q 0.46 deleterious(0.03) possibly_damaging(0.811) TCGA-FD-A6TC-01 1 202457717 202457717 C G PPP1R12B Missense_Mutation p.S636C 0.18 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 1 204587650 204587650 C T LRRN2 Missense_Mutation p.E491K 0.24 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 1 206760142 206760142 C T RASSF5 Intron 0.15 TCGA-FD-A6TC-01 1 210334291 210334291 C G SYT14 Silent p.L588L 0.17 TCGA-FD-A6TC-01 1 211486789 211486789 G A RCOR3 Silent p.R447R 0.46 TCGA-FD-A6TC-01 1 220219717 220219717 G C EPRS Missense_Mutation p.S5C 0.23 tolerated(0.13) benign(0) TCGA-FD-A6TC-01 1 22048202 22048202 C T USP48 Silent p.K568K 0.18 TCGA-FD-A6TC-01 1 22158028 22158028 C T HSPG2 Missense_Mutation p.E3794K 0.13 probably_damaging(0.926) TCGA-FD-A6TC-01 1 222716986 222716986 G C HHIPL2 Missense_Mutation p.F289L 0.45 tolerated(0.62) probably_damaging(0.988) TCGA-FD-A6TC-01 1 223177878 223177878 G A DISP1 Missense_Mutation p.G1047S 0.22 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 1 223396886 223396886 C G SUSD4 Silent p.V383V 0.25 TCGA-FD-A6TC-01 1 223989853 223989853 G T TP53BP2 Missense_Mutation p.P397H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A6TC-01 1 224488316 224488316 C A NVL Missense_Mutation p.G337V 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 1 228646204 228646204 C G HIST3H2BB Missense_Mutation p.S125C 0.18 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-FD-A6TC-01 1 22987543 22987543 C T C1QB Silent p.F142F 0.35 TCGA-FD-A6TC-01 1 231079566 231079566 C G TTC13 Missense_Mutation p.E220Q 0.20 tolerated(0.14) probably_damaging(0.915) TCGA-FD-A6TC-01 1 232649794 232649794 G C SIPA1L2 Nonsense_Mutation p.S431* 0.32 TCGA-FD-A6TC-01 1 233394878 233394878 C T PCNXL2 Missense_Mutation p.E244K 0.16 deleterious_low_confidence(0.01) benign(0.23) TCGA-FD-A6TC-01 1 235611678 235611678 C G TBCE Missense_Mutation p.Q472E 0.37 deleterious(0) benign(0.071) TCGA-FD-A6TC-01 1 235611708 235611708 C T TBCE Missense_Mutation p.L482F 0.32 tolerated(0.22) benign(0.029) TCGA-FD-A6TC-01 1 236175260 236175260 G A NID1 Missense_Mutation p.P830S 0.48 tolerated(0.07) benign(0.362) TCGA-FD-A6TC-01 1 237015873 237015873 C G MTR Missense_Mutation p.S583C 0.36 deleterious(0) possibly_damaging(0.837) TCGA-FD-A6TC-01 1 237944909 237944909 G A RYR2 Silent p.Q3975Q 0.55 TCGA-FD-A6TC-01 1 237982488 237982488 A G RYR2 Missense_Mutation p.I4862M 0.26 possibly_damaging(0.904) TCGA-FD-A6TC-01 1 242030174 242030174 C G EXO1 Missense_Mutation p.Q362E 0.32 tolerated(0.38) benign(0.006) TCGA-FD-A6TC-01 1 244217353 244217353 G C ZBTB18 Missense_Mutation p.E93Q 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-FD-A6TC-01 1 246811160 246811160 G C CNST Missense_Mutation p.E553Q 0.42 tolerated(0.11) benign(0.132) TCGA-FD-A6TC-01 1 248436256 248436256 G C OR2T33 Missense_Mutation p.I287M 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 1 248738002 248738002 G A OR2T34 Silent p.L19L 0.25 TCGA-FD-A6TC-01 1 24921940 24921940 C T NCMAP Silent p.L7L 0.13 TCGA-FD-A6TC-01 1 26316014 26316014 C G PAFAH2 Missense_Mutation p.E57Q 0.46 deleterious(0.01) probably_damaging(0.914) TCGA-FD-A6TC-01 1 27250577 27250577 C T NUDC Intron 0.24 TCGA-FD-A6TC-01 1 28320057 28320057 G C EYA3 Nonsense_Mutation p.S386* 0.20 TCGA-FD-A6TC-01 1 28564223 28564223 G A ATPIF1 Intron 0.30 TCGA-FD-A6TC-01 1 31762255 31762255 G C SNRNP40 Nonsense_Mutation p.S126* 0.45 TCGA-FD-A6TC-01 1 31906965 31906965 C T SERINC2 Silent p.I438I 0.14 TCGA-FD-A6TC-01 1 34663435 34663435 G C C1orf94 Missense_Mutation p.Q310H 0.11 tolerated(0.1) benign(0.066) TCGA-FD-A6TC-01 1 36786244 36786244 C G SH3D21 Missense_Mutation p.I660M 0.12 deleterious(0) possibly_damaging(0.888) TCGA-FD-A6TC-01 1 38172733 38172733 C G CDCA8 Silent p.L265L 0.12 TCGA-FD-A6TC-01 1 39823495 39823495 C T MACF1 Missense_Mutation p.S1896L 0.18 benign(0.002) TCGA-FD-A6TC-01 1 39906708 39906708 G C MACF1 Missense_Mutation p.E4102Q 0.12 probably_damaging(0.999) TCGA-FD-A6TC-01 1 40307540 40307540 C T TRIT1 Missense_Mutation p.R427K 0.22 tolerated(0.14) benign(0.035) TCGA-FD-A6TC-01 1 40735725 40735725 C G ZMPSTE24 Missense_Mutation p.L185V 0.19 tolerated(0.23) benign(0.109) TCGA-FD-A6TC-01 1 40747018 40747018 C G ZMPSTE24 Missense_Mutation p.S258C 0.19 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 1 43396789 43396789 G A SLC2A1 Missense_Mutation p.S68L 0.13 deleterious(0.04) possibly_damaging(0.582) TCGA-FD-A6TC-01 1 44083231 44083231 C G PTPRF Missense_Mutation p.S1396C 0.37 deleterious(0) probably_damaging(0.909) TCGA-FD-A6TC-01 1 44156578 44156578 G A KDM4A Silent p.Q700Q 0.17 TCGA-FD-A6TC-01 1 45270161 45270161 C T PLK3 Missense_Mutation p.S498L 0.16 tolerated(0.72) possibly_damaging(0.673) TCGA-FD-A6TC-01 1 45271391 45271391 C G PLK3 3'UTR 0.17 TCGA-FD-A6TC-01 1 45525881 45525881 C G ZSWIM5 Missense_Mutation p.E331Q 0.12 tolerated(0.11) unknown(0) TCGA-FD-A6TC-01 1 45965964 45965964 G A MMACHC 5'UTR 0.52 TCGA-FD-A6TC-01 1 46086643 46086649 GCCAGCG - CCDC17 Frame_Shift_Del p.R509Afs*18 0.48 TCGA-FD-A6TC-01 1 51777794 51777794 C T TTC39A Missense_Mutation p.E122K 0.33 deleterious(0.02) possibly_damaging(0.782) TCGA-FD-A6TC-01 1 52279712 52279712 C T NRD1 Missense_Mutation p.E625K 0.40 deleterious(0) probably_damaging(0.96) TCGA-FD-A6TC-01 1 52303199 52303199 C T NRD1 Missense_Mutation p.E242K 0.41 tolerated_low_confidence(0.48) benign(0.005) TCGA-FD-A6TC-01 1 52761599 52761599 C T ZFYVE9 Missense_Mutation p.R1095W 0.27 deleterious(0) probably_damaging(0.961) TCGA-FD-A6TC-01 1 54666234 54666234 C G MRPL37 Missense_Mutation p.I106M 0.54 tolerated(0.09) benign(0.314) TCGA-FD-A6TC-01 1 55224036 55224036 C T PARS2 Missense_Mutation p.E267K 0.33 deleterious(0) probably_damaging(0.992) TCGA-FD-A6TC-01 1 59165715 59165715 C T MYSM1 Missense_Mutation p.E4K 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A6TC-01 1 6314959 6314959 C T GPR153 Missense_Mutation p.D3N 0.47 deleterious_low_confidence(0.03) benign(0.388) TCGA-FD-A6TC-01 1 63269499 63269499 C G ATG4C Silent p.T14T 0.33 TCGA-FD-A6TC-01 1 65131827 65131827 C T CACHD1 Silent p.I737I 0.15 TCGA-FD-A6TC-01 1 67450437 67450437 G C MIER1 Missense_Mutation p.E518Q 0.22 tolerated(0.11) benign(0.193) TCGA-FD-A6TC-01 1 75175793 75175793 C T CRYZ Missense_Mutation p.D207N 0.22 tolerated(0.2) benign(0.005) TCGA-FD-A6TC-01 1 75688108 75688108 G T SLC44A5 Silent p.L341L 0.11 TCGA-FD-A6TC-01 1 78546505 78546505 C T GIPC2 Silent p.L129L 0.46 TCGA-FD-A6TC-01 1 809528 809528 C G FAM41C 5'Flank 0.20 TCGA-FD-A6TC-01 1 809798 809798 C T FAM41C 5'Flank 0.15 TCGA-FD-A6TC-01 1 89318869 89318869 C G GTF2B 3'UTR 0.23 TCGA-FD-A6TC-01 1 89735133 89735133 G A GBP5 Nonsense_Mutation p.Q36* 0.25 TCGA-FD-A6TC-01 1 89834216 89834216 C T GBP6 Nonsense_Mutation p.Q36* 0.19 TCGA-FD-A6TC-01 1 91740361 91740361 C G HFM1 Missense_Mutation p.Q1198H 0.25 deleterious(0) probably_damaging(0.94) TCGA-FD-A6TC-01 1 91779544 91779544 G C HFM1 Missense_Mutation p.L1072V 0.22 deleterious(0.04) possibly_damaging(0.629) TCGA-FD-A6TC-01 1 92595329 92595329 C G BTBD8 Missense_Mutation p.Q250E 0.39 deleterious(0.01) probably_damaging(0.951) TCGA-FD-A6TC-01 1 92737113 92737113 C G GLMN Missense_Mutation p.E278Q 0.21 tolerated(0.06) benign(0.139) TCGA-FD-A6TC-01 1 94564374 94564374 C A ABCA4 Silent p.V248V 0.25 TCGA-FD-A6TC-01 1 98060691 98060691 G T DPYD Missense_Mutation p.F294L 0.22 tolerated(0.07) probably_damaging(1) TCGA-FD-A6TC-01 20 18477821 18477821 G C RBBP9 5'UTR 0.20 TCGA-FD-A6TC-01 20 23345885 23345885 G C GZF1 Missense_Mutation p.E289Q 0.09 tolerated(0.21) benign(0.157) TCGA-FD-A6TC-01 20 29632660 29632660 G A FRG1B Missense_Mutation p.E159K 0.03 deleterious(0.02) benign(0.099) TCGA-FD-A6TC-01 20 30723916 30723916 G A TM9SF4 Missense_Mutation p.E57K 0.68 tolerated(0.11) benign(0.445) TCGA-FD-A6TC-01 20 30723969 30723969 G C TM9SF4 Missense_Mutation p.E74D 0.64 deleterious(0.03) possibly_damaging(0.908) TCGA-FD-A6TC-01 20 32660068 32660068 C G RALY Missense_Mutation p.S63C 0.13 deleterious(0.05) possibly_damaging(0.617) TCGA-FD-A6TC-01 20 34054005 34054005 G A CEP250 Silent p.E156E 0.44 TCGA-FD-A6TC-01 20 34082422 34082422 G A CEP250 Silent p.E1035E 0.19 TCGA-FD-A6TC-01 20 34262346 34262346 G C NFS1 Missense_Mutation p.I354M 0.40 deleterious(0) possibly_damaging(0.675) TCGA-FD-A6TC-01 20 34312510 34312510 G A RBM39 Silent p.I223I 0.07 TCGA-FD-A6TC-01 20 34807703 34807703 C T EPB41L1 Silent p.L792L 0.18 TCGA-FD-A6TC-01 20 35207317 35207317 C G TGIF2 Nonsense_Mutation p.S47* 0.40 TCGA-FD-A6TC-01 20 35769570 35769570 C T MROH8 Missense_Mutation p.E522K 0.20 deleterious(0.03) possibly_damaging(0.687) TCGA-FD-A6TC-01 20 36662388 36662388 C T RPRD1B Silent p.L13L 0.15 TCGA-FD-A6TC-01 20 3674888 3674888 G A SIGLEC1 Missense_Mutation p.S1079L 0.58 deleterious(0) possibly_damaging(0.685) TCGA-FD-A6TC-01 20 44442012 44442012 G A UBE2C Intron 0.17 TCGA-FD-A6TC-01 20 44442091 44442091 G A UBE2C Silent p.L39L 0.18 TCGA-FD-A6TC-01 20 44505507 44505507 G A ZSWIM3 Missense_Mutation p.D104N 0.23 tolerated(0.08) benign(0.007) TCGA-FD-A6TC-01 20 44746944 44746944 C T CD40 5'UTR 0.33 TCGA-FD-A6TC-01 20 45192078 45192078 G A SLC13A3 Missense_Mutation p.S536F 0.11 tolerated(0.51) probably_damaging(0.987) TCGA-FD-A6TC-01 20 45354269 45354269 C G SLC2A10 Silent p.L198L 0.53 TCGA-FD-A6TC-01 20 45853154 45853154 G A ZMYND8 Silent p.I978I 0.34 TCGA-FD-A6TC-01 20 47361601 47361601 C T PREX1 Silent p.P125P 0.15 TCGA-FD-A6TC-01 20 47634045 47634045 G T ARFGEF2 Missense_Mutation p.W1489C 0.10 deleterious(0) probably_damaging(0.91) TCGA-FD-A6TC-01 20 47707504 47707504 C A CSE1L Silent p.I770I 0.41 TCGA-FD-A6TC-01 20 48523170 48523170 C T SPATA2 Silent p.V183V 0.60 TCGA-FD-A6TC-01 20 50408479 50408479 C A SALL4 Silent p.V181V 0.44 TCGA-FD-A6TC-01 20 52192701 52192701 G C ZNF217 Missense_Mutation p.P868A 0.11 tolerated(0.62) benign(0.001) TCGA-FD-A6TC-01 20 52612632 52612632 G C BCAS1 Intron 0.45 TCGA-FD-A6TC-01 20 52645355 52645355 G C BCAS1 Missense_Mutation p.S100C 0.13 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 20 54978884 54978884 G C CSTF1 3'UTR 0.12 TCGA-FD-A6TC-01 20 61441893 61441893 G A OGFR Silent p.K147K 0.23 TCGA-FD-A6TC-01 20 62587691 62587691 G A UCKL1 Missense_Mutation p.P12L 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A6TC-01 21 11047503 11047503 G C BAGE2 RNA 0.06 TCGA-FD-A6TC-01 21 17150316 17150316 G C USP25 Missense_Mutation p.G121A 0.41 deleterious(0.03) possibly_damaging(0.794) TCGA-FD-A6TC-01 21 31812775 31812775 G A KRTAP15-1 Missense_Mutation p.G44S 0.35 tolerated(0.1) probably_damaging(1) TCGA-FD-A6TC-01 21 32624420 32624420 G C TIAM1 Missense_Mutation p.S350C 0.15 tolerated(0.37) benign(0.003) TCGA-FD-A6TC-01 21 37788621 37788621 G C CHAF1B Missense_Mutation p.R546T 0.42 deleterious_low_confidence(0.02) benign(0.193) TCGA-FD-A6TC-01 21 38269178 38269178 G A HLCS Missense_Mutation p.T478M 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 21 38505047 38505047 C T TTC3 Missense_Mutation p.S475F 0.32 tolerated(0.15) probably_damaging(0.909) TCGA-FD-A6TC-01 21 41137628 41137628 C G IGSF5 Silent p.T89T 0.30 TCGA-FD-A6TC-01 21 41173350 41173350 C T IGSF5 3'UTR 0.44 TCGA-FD-A6TC-01 21 41446974 41446974 C A DSCAM Missense_Mutation p.K1626N 0.50 deleterious(0.02) possibly_damaging(0.77) TCGA-FD-A6TC-01 21 42821099 42821099 G C MX1 Missense_Mutation p.E437Q 0.24 deleterious(0.02) probably_damaging(0.986) TCGA-FD-A6TC-01 21 45053255 45053255 G A HSF2BP Silent p.L113L 0.09 TCGA-FD-A6TC-01 21 45877273 45877273 C T LRRC3 Missense_Mutation p.S249F 0.33 deleterious(0.02) possibly_damaging(0.498) TCGA-FD-A6TC-01 21 46951324 46951324 C G SLC19A1 Missense_Mutation p.D310H 0.24 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 22 19384454 19384454 C T HIRA Silent p.L170L 0.64 TCGA-FD-A6TC-01 22 19766778 19766778 G A GNB1L 3'Flank 0.39 TCGA-FD-A6TC-01 22 21384249 21384249 C A SLC7A4 Silent p.L458L 0.17 TCGA-FD-A6TC-01 22 22869482 22869482 C T ZNF280A Missense_Mutation p.R158K 0.39 tolerated(0.91) benign(0.007) TCGA-FD-A6TC-01 22 25308623 25308623 C T SGSM1 Silent p.F999F 0.40 TCGA-FD-A6TC-01 22 29709884 29709884 C G RASL10A Silent p.V104V 0.55 TCGA-FD-A6TC-01 22 30689670 30689670 C G TBC1D10A Missense_Mutation p.K347N 0.15 tolerated(0.06) benign(0.017) TCGA-FD-A6TC-01 22 31533855 31533855 G C PLA2G3 Missense_Mutation p.R303G 0.16 tolerated(0.21) benign(0.003) TCGA-FD-A6TC-01 22 31674314 31674314 G A LIMK2 3'Flank 0.52 TCGA-FD-A6TC-01 22 31722909 31722909 C G PATZ1 Missense_Mutation p.D678H 0.19 deleterious_low_confidence(0.02) probably_damaging(0.964) TCGA-FD-A6TC-01 22 31723201 31723201 C T PATZ1 Silent p.Q580Q 0.19 TCGA-FD-A6TC-01 22 31740604 31740604 G C PATZ1 Missense_Mutation p.P329A 0.54 tolerated(0.45) possibly_damaging(0.495) TCGA-FD-A6TC-01 22 31845448 31845448 C T EIF4ENIF1 Missense_Mutation p.E552K 0.67 deleterious(0.02) possibly_damaging(0.735) TCGA-FD-A6TC-01 22 35812686 35812686 C T MCM5 Missense_Mutation p.S490L 0.55 deleterious(0) possibly_damaging(0.848) TCGA-FD-A6TC-01 22 37485682 37485682 C G TMPRSS6 Missense_Mutation p.E267Q 0.33 tolerated(0.06) possibly_damaging(0.653) TCGA-FD-A6TC-01 22 37771293 37771293 G C ELFN2 Missense_Mutation p.I94M 0.37 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 22 39908307 39908307 C G MIEF1 Silent p.L131L 0.42 TCGA-FD-A6TC-01 22 40742531 40742531 C G ADSL 5'UTR 0.78 TCGA-FD-A6TC-01 22 41601359 41601359 G A L3MBTL2 5'UTR 0.35 TCGA-FD-A6TC-01 22 42557346 42557346 C G TCF20 3'UTR 0.52 TCGA-FD-A6TC-01 22 43538972 43538972 G A MCAT Missense_Mutation p.S128L 0.88 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 22 43575733 43575733 G A TTLL12 Silent p.Y244Y 0.27 TCGA-FD-A6TC-01 22 50307071 50307071 G A ALG12 Missense_Mutation p.S86L 0.15 possibly_damaging(0.625) TCGA-FD-A6TC-01 22 50471744 50471744 G C TTLL8 Missense_Mutation p.F406L 0.40 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 22 50580509 50580509 G A MOV10L1 Splice_Site p.X691_splice 0.61 TCGA-FD-A6TC-01 22 50724680 50724680 C T PLXNB2 Missense_Mutation p.R600Q 0.63 tolerated(0.61) benign(0.002) TCGA-FD-A6TC-01 2 10050867 10050867 G A TAF1B Missense_Mutation p.E320K 0.49 deleterious(0) probably_damaging(0.989) TCGA-FD-A6TC-01 2 103013002 103013002 G A IL18R1 Missense_Mutation p.E428K 0.41 deleterious(0.01) benign(0.398) TCGA-FD-A6TC-01 2 105924502 105924502 G A TGFBRAP1 Missense_Mutation p.S86L 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-FD-A6TC-01 2 108604717 108604717 G A SLC5A7 Missense_Mutation p.E36K 0.13 tolerated(0.55) benign(0.004) TCGA-FD-A6TC-01 2 109383109 109383109 G A RANBP2 Silent p.Q2038Q 0.10 TCGA-FD-A6TC-01 2 112940397 112940397 G A FBLN7 Missense_Mutation p.E234K 0.52 tolerated(0.42) benign(0.011) TCGA-FD-A6TC-01 2 113783794 113783794 C G IL36B Missense_Mutation p.D93H 0.15 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-FD-A6TC-01 2 113953809 113953809 C G PSD4 Missense_Mutation p.Q771E 0.50 deleterious(0.04) benign(0.214) TCGA-FD-A6TC-01 2 118586868 118586868 G C DDX18 Missense_Mutation p.E566Q 0.08 deleterious(0.01) benign(0.16) TCGA-FD-A6TC-01 2 121726472 121726472 C T GLI2 Silent p.L276L 0.11 TCGA-FD-A6TC-01 2 128044548 128044548 C A ERCC3 Missense_Mutation p.R358I 0.21 deleterious(0) probably_damaging(0.953) TCGA-FD-A6TC-01 2 129025846 129025846 C T HS6ST1 Missense_Mutation p.E376K 0.34 tolerated(0.05) benign(0.028) TCGA-FD-A6TC-01 2 130952697 130952697 G C TUBA3E Missense_Mutation p.I110M 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.906) TCGA-FD-A6TC-01 2 131102212 131102212 G A IMP4 Silent p.L41L 0.48 TCGA-FD-A6TC-01 2 131797929 131797929 G A ARHGEF4 Silent p.Q340Q 0.58 TCGA-FD-A6TC-01 2 132236984 132236984 C G TUBA3D Missense_Mutation p.I110M 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-FD-A6TC-01 2 149226305 149226305 C A MBD5 Missense_Mutation p.P265T 0.47 deleterious(0.01) possibly_damaging(0.803) TCGA-FD-A6TC-01 2 154334837 154334837 G T RPRM Silent p.L81L 0.20 TCGA-FD-A6TC-01 2 155711570 155711570 G C KCNJ3 Missense_Mutation p.L417F 0.18 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-FD-A6TC-01 2 160055543 160055543 G A TANC1 Missense_Mutation p.D1075N 0.27 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 2 160205727 160205727 G C BAZ2B Missense_Mutation p.S1643C 0.19 benign(0.378) TCGA-FD-A6TC-01 2 162273030 162273030 C T TBR1 Missense_Mutation p.H37Y 0.17 tolerated_low_confidence(0.18) possibly_damaging(0.775) TCGA-FD-A6TC-01 2 163133412 163133412 C A IFIH1 Nonsense_Mutation p.E697* 0.38 TCGA-FD-A6TC-01 2 165953972 165953972 G A SCN3A Silent p.L1343L 0.23 TCGA-FD-A6TC-01 2 167128957 167128957 C G SCN9A Missense_Mutation p.M1090I 0.50 tolerated(0.17) benign(0.005) TCGA-FD-A6TC-01 2 167129293 167129293 C G SCN9A Missense_Mutation p.Q978H 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-FD-A6TC-01 2 168101598 168101598 G C XIRP2 Missense_Mutation p.Q1232H 0.14 probably_damaging(1) TCGA-FD-A6TC-01 2 170042414 170042414 C T LRP2 Silent p.R3148R 0.53 TCGA-FD-A6TC-01 2 170936339 170936339 G C UBR3 Missense_Mutation p.E1739Q 0.40 tolerated(0.21) benign(0.154) TCGA-FD-A6TC-01 2 171853231 171853231 C G TLK1 Missense_Mutation p.E686Q 0.19 tolerated(0.09) probably_damaging(0.983) TCGA-FD-A6TC-01 2 176995373 176995373 C T HOXD8 Silent p.Y93Y 0.30 TCGA-FD-A6TC-01 2 178416157 178416157 C G TTC30B Missense_Mutation p.K445N 0.09 deleterious(0) possibly_damaging(0.889) TCGA-FD-A6TC-01 2 179399306 179399306 G A TTN Silent p.I34012I 0.13 TCGA-FD-A6TC-01 2 179414365 179414365 G A TTN Missense_Mutation p.S30695F 0.24 TCGA-FD-A6TC-01 2 179432083 179432083 A C TTN Missense_Mutation p.I26259S 0.16 TCGA-FD-A6TC-01 2 179472971 179472971 C A TTN Nonsense_Mutation p.E17547* 0.45 TCGA-FD-A6TC-01 2 17955618 17955618 G A GEN1 Missense_Mutation p.M384I 0.53 deleterious(0) possibly_damaging(0.78) TCGA-FD-A6TC-01 2 179577889 179577889 G C TTN Nonsense_Mutation p.S8991* 0.41 TCGA-FD-A6TC-01 2 179591902 179591902 G A TTN Silent p.L6730L 0.48 TCGA-FD-A6TC-01 2 179597845 179597845 C T TTN Missense_Mutation p.R5353Q 0.73 TCGA-FD-A6TC-01 2 179598050 179598050 C T TTN Missense_Mutation p.E5324K 0.27 TCGA-FD-A6TC-01 2 179605087 179605087 G C TTN Silent p.V4291V 0.23 TCGA-FD-A6TC-01 2 179733909 179733909 C G CCDC141 Missense_Mutation p.E777Q 0.22 tolerated(0.06) benign(0.152) TCGA-FD-A6TC-01 2 182374526 182374526 A - ITGA4 Frame_Shift_Del p.T615Qfs*2 0.31 TCGA-FD-A6TC-01 2 183993166 183993166 G A NUP35 Missense_Mutation p.M64I 0.15 tolerated(0.38) benign(0.003) TCGA-FD-A6TC-01 2 186673558 186673558 G C FSIP2 Missense_Mutation p.D6598H 0.23 benign(0.308) TCGA-FD-A6TC-01 2 187694559 187694559 C T ZSWIM2 Silent p.L330L 0.31 TCGA-FD-A6TC-01 2 190569937 190569937 G A ANKAR Missense_Mutation p.E633K 0.40 tolerated(0.12) possibly_damaging(0.721) TCGA-FD-A6TC-01 2 191848376 191848376 C T STAT1 Missense_Mutation p.E480K 0.41 deleterious(0.01) benign(0.35) TCGA-FD-A6TC-01 2 196674591 196674591 G C DNAH7 Missense_Mutation p.Q3256E 0.10 tolerated(0.94) benign(0.001) TCGA-FD-A6TC-01 2 20101478 20101478 C G TTC32 Missense_Mutation p.E46D 0.56 tolerated(0.6) benign(0) TCGA-FD-A6TC-01 2 202698646 202698646 C T CDK15 Nonsense_Mutation p.Q228* 0.40 TCGA-FD-A6TC-01 2 206547972 206547972 G A NRP2 5'UTR 0.29 TCGA-FD-A6TC-01 2 209136238 209136238 C T PIKFYVE 5'UTR 0.40 TCGA-FD-A6TC-01 2 21229785 21229785 C T APOB Missense_Mutation p.D3319N 0.10 probably_damaging(0.968) TCGA-FD-A6TC-01 2 219259409 219259409 C G SLC11A1 Silent p.L481L 0.27 TCGA-FD-A6TC-01 2 219266367 219266367 G A CTDSP1 Missense_Mutation p.D50N 0.32 tolerated(0.7) benign(0.005) TCGA-FD-A6TC-01 2 219305492 219305492 C G VIL1 Silent p.L759L 0.65 TCGA-FD-A6TC-01 2 220476511 220476511 C G STK11IP Missense_Mutation p.Q775E 0.52 tolerated(0.54) benign(0.006) TCGA-FD-A6TC-01 2 225422441 225422441 G A CUL3 Missense_Mutation p.H67Y 0.40 tolerated(0.08) benign(0.151) TCGA-FD-A6TC-01 2 236949470 236949470 G C AGAP1 Missense_Mutation p.D626H 0.65 deleterious(0) possibly_damaging(0.759) TCGA-FD-A6TC-01 2 238277471 238277471 G C COL6A3 Silent p.V1545V 0.25 TCGA-FD-A6TC-01 2 238727037 238727037 C G RBM44 Missense_Mutation p.S493C 0.41 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 2 241069402 241069402 G C MYEOV2 Missense_Mutation p.P103A 0.46 tolerated_low_confidence(0.06) unknown(0) TCGA-FD-A6TC-01 2 241517259 241517259 G A RNPEPL1 Missense_Mutation p.E479K 0.40 tolerated_low_confidence(0.42) benign(0) TCGA-FD-A6TC-01 2 24920634 24920634 G A NCOA1 Missense_Mutation p.E306K 0.56 deleterious(0.01) possibly_damaging(0.768) TCGA-FD-A6TC-01 2 25967002 25967002 C T ASXL2 Missense_Mutation p.G735E 0.16 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FD-A6TC-01 2 25967074 25967074 C G ASXL2 Missense_Mutation p.R711T 0.57 tolerated(0.35) benign(0.016) TCGA-FD-A6TC-01 2 27609064 27609064 C T PPM1G Silent p.Q91Q 0.14 TCGA-FD-A6TC-01 2 27662685 27662685 G C NRBP1 Missense_Mutation p.R319T 0.16 deleterious(0.01) possibly_damaging(0.688) TCGA-FD-A6TC-01 2 27665747 27665747 G C KRTCAP3 Missense_Mutation p.R84S 0.10 deleterious(0) benign(0.433) TCGA-FD-A6TC-01 2 27850058 27850058 C T CCDC121 Silent p.K365K 0.64 TCGA-FD-A6TC-01 2 27850164 27850164 C G CCDC121 Missense_Mutation p.R330T 0.58 tolerated(0.09) benign(0.058) TCGA-FD-A6TC-01 2 27850291 27850291 C T CCDC121 Missense_Mutation p.E288K 0.46 tolerated(0.11) possibly_damaging(0.671) TCGA-FD-A6TC-01 2 27850301 27850301 C T CCDC121 Silent p.Q284Q 0.48 TCGA-FD-A6TC-01 2 29073177 29073177 C - SPDYA 3'UTR 0.08 TCGA-FD-A6TC-01 2 29083989 29083989 C G TRMT61B Missense_Mutation p.D330H 0.12 tolerated(0.14) probably_damaging(0.937) TCGA-FD-A6TC-01 2 32249236 32249236 C T DPY30 3'UTR 0.19 TCGA-FD-A6TC-01 2 32264363 32264363 G A DPY30 Silent p.L23L 0.60 TCGA-FD-A6TC-01 2 32474748 32474748 C T NLRC4 Missense_Mutation p.E729K 0.15 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 2 32474907 32474907 C G NLRC4 Missense_Mutation p.D676H 0.10 deleterious(0) probably_damaging(0.985) TCGA-FD-A6TC-01 2 32475267 32475267 C G NLRC4 Missense_Mutation p.E556Q 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A6TC-01 2 32475303 32475303 C T NLRC4 Missense_Mutation p.E544K 0.12 deleterious(0.01) possibly_damaging(0.498) TCGA-FD-A6TC-01 2 32475309 32475309 C T NLRC4 Missense_Mutation p.E542K 0.15 tolerated(0.44) benign(0.079) TCGA-FD-A6TC-01 2 32475346 32475346 C G NLRC4 Missense_Mutation p.W529C 0.17 tolerated(0.2) benign(0.022) TCGA-FD-A6TC-01 2 32475489 32475489 C T NLRC4 Missense_Mutation p.D482N 0.18 deleterious(0.03) probably_damaging(0.931) TCGA-FD-A6TC-01 2 32475685 32475685 C G NLRC4 Silent p.V416V 0.12 TCGA-FD-A6TC-01 2 32475708 32475708 C G NLRC4 Missense_Mutation p.E409Q 0.21 tolerated(0.8) benign(0.003) TCGA-FD-A6TC-01 2 32475889 32475889 C G NLRC4 Missense_Mutation p.Q348H 0.21 deleterious(0) probably_damaging(0.979) TCGA-FD-A6TC-01 2 32476047 32476047 C G NLRC4 Missense_Mutation p.E296Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TC-01 2 32476165 32476165 C G NLRC4 Missense_Mutation p.Q256H 0.14 deleterious(0) probably_damaging(0.977) TCGA-FD-A6TC-01 2 32476324 32476324 G A NLRC4 Silent p.L203L 0.14 TCGA-FD-A6TC-01 2 32768338 32768338 C G BIRC6 Missense_Mutation p.Q4108E 0.06 benign(0.022) TCGA-FD-A6TC-01 2 37455823 37455823 C G CEBPZ Missense_Mutation p.E171D 0.15 tolerated(0.44) benign(0.334) TCGA-FD-A6TC-01 2 39542489 39542489 C T MAP4K3 Missense_Mutation p.R320K 0.59 tolerated(0.56) possibly_damaging(0.84) TCGA-FD-A6TC-01 2 43451536 43451536 G A ZFP36L2 Silent p.L469L 0.70 TCGA-FD-A6TC-01 2 44531404 44531404 C G SLC3A1 Missense_Mutation p.S420C 0.11 deleterious(0) probably_damaging(0.964) TCGA-FD-A6TC-01 2 44586860 44586860 C G PREPL 5'UTR 0.15 TCGA-FD-A6TC-01 2 45233486 45233486 G A SIX2 Silent p.L233L 0.56 TCGA-FD-A6TC-01 2 47703691 47703691 G C MSH2 Missense_Mutation p.E731Q 0.59 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 2 48027598 48027598 C A MSH6 Missense_Mutation p.H826N 0.64 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 2 50724685 50724685 C T NRXN1 Missense_Mutation p.D929N 0.09 deleterious(0.04) benign(0.13) TCGA-FD-A6TC-01 2 50765638 50765638 C G NRXN1 Missense_Mutation p.W672C 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 2 60695963 60695963 G A BCL11A Missense_Mutation p.L131F 0.38 tolerated(0.7) benign(0.163) TCGA-FD-A6TC-01 2 65245289 65245289 C T SLC1A4 Silent p.I373I 0.27 TCGA-FD-A6TC-01 2 73339509 73339509 C T RAB11FIP5 Missense_Mutation p.E133K 0.40 tolerated(1) benign(0.004) TCGA-FD-A6TC-01 2 74783831 74783831 C A DOK1 Missense_Mutation p.Q346K 0.15 tolerated(0.27) benign(0.02) TCGA-FD-A6TC-01 2 80540733 80540733 A - CTNNA2 Intron 0.36 TCGA-FD-A6TC-01 2 80782936 80782936 C T CTNNA2 Silent p.I553I 0.09 TCGA-FD-A6TC-01 2 84652549 84652549 G T SUCLG1 Missense_Mutation p.T335K 0.26 tolerated(0.05) benign(0.029) TCGA-FD-A6TC-01 2 88082561 88082561 C T RGPD2 Missense_Mutation p.E1328K 0.42 deleterious(0.04) benign(0.273) TCGA-FD-A6TC-01 2 88327876 88327876 C G KRCC1 Missense_Mutation p.Q69H 0.10 tolerated(0.13) benign(0.079) TCGA-FD-A6TC-01 2 9474903 9474903 C G ASAP2 Silent p.L241L 0.71 TCGA-FD-A6TC-01 2 9548250 9548250 C G ITGB1BP1 Missense_Mutation p.D125H 0.65 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A6TC-01 2 96690199 96690199 C T GPAT2 Missense_Mutation p.V549I 0.21 tolerated(0.22) benign(0.208) TCGA-FD-A6TC-01 2 98349418 98349418 C T ZAP70 Silent p.L212L 0.09 TCGA-FD-A6TC-01 3 111700672 111700672 G C ABHD10 Missense_Mutation p.D62H 0.42 deleterious(0.04) benign(0.126) TCGA-FD-A6TC-01 3 111849351 111849351 C T GCSAM Silent p.Q15Q 0.34 TCGA-FD-A6TC-01 3 112999991 112999991 G A BOC Missense_Mutation p.E808K 0.39 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 3 113505193 113505193 C G ATP6V1A Missense_Mutation p.L227V 0.12 deleterious(0) probably_damaging(0.991) TCGA-FD-A6TC-01 3 119187927 119187927 C G POGLUT1 Nonsense_Mutation p.S20* 0.10 TCGA-FD-A6TC-01 3 119396068 119396068 C G COX17 Missense_Mutation p.K30N 0.43 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TC-01 3 120394679 120394679 G A HGD Missense_Mutation p.S16L 0.50 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TC-01 3 121409868 121409868 G C GOLGB1 Silent p.L2781L 0.49 TCGA-FD-A6TC-01 3 121410684 121410684 C G GOLGB1 Missense_Mutation p.E2509D 0.49 probably_damaging(0.999) TCGA-FD-A6TC-01 3 121410802 121410802 G C GOLGB1 Missense_Mutation p.S2470C 0.41 possibly_damaging(0.601) TCGA-FD-A6TC-01 3 123071328 123071328 C G ADCY5 Missense_Mutation p.R412P 0.09 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 3 123071362 123071362 C G ADCY5 Missense_Mutation p.E401Q 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-FD-A6TC-01 3 12422876 12422876 C G PPARG Silent p.L122L 0.53 TCGA-FD-A6TC-01 3 124738208 124738208 C G HEG1 Missense_Mutation p.G496R 0.28 tolerated(0.82) benign(0.001) TCGA-FD-A6TC-01 3 12641734 12641734 T C RAF1 Missense_Mutation p.T303A 0.33 tolerated(0.36) benign(0.003) TCGA-FD-A6TC-01 3 12641741 12641741 C G RAF1 Silent p.L300L 0.31 TCGA-FD-A6TC-01 3 126747835 126747835 G A PLXNA1 Splice_Site p.X1557_splice 0.20 TCGA-FD-A6TC-01 3 127325142 127325142 C T MCM2 Silent p.I285I 0.15 TCGA-FD-A6TC-01 3 130887738 130887738 C T NEK11 Missense_Mutation p.S414L 0.12 tolerated(0.56) benign(0.003) TCGA-FD-A6TC-01 3 136170958 136170958 C T STAG1 Missense_Mutation p.E449K 0.28 tolerated(0.38) benign(0.04) TCGA-FD-A6TC-01 3 13659600 13659600 G A FBLN2 Missense_Mutation p.R585Q 0.28 tolerated(0.16) benign(0.031) TCGA-FD-A6TC-01 3 138329621 138329621 C T FAIM 5'UTR 0.27 TCGA-FD-A6TC-01 3 138739047 138739047 C T PRR23B Missense_Mutation p.E153K 0.23 deleterious(0.02) probably_damaging(0.926) TCGA-FD-A6TC-01 3 140397045 140397045 G A TRIM42 5'UTR 0.46 TCGA-FD-A6TC-01 3 143567035 143567035 G T SLC9A9 Missense_Mutation p.H44N 0.30 deleterious(0.01) possibly_damaging(0.799) TCGA-FD-A6TC-01 3 147128543 147128543 G A ZIC1 Missense_Mutation p.R215H 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 3 148727113 148727113 G A GYG1 Missense_Mutation p.D178N 0.18 deleterious(0.03) possibly_damaging(0.706) TCGA-FD-A6TC-01 3 149470213 149470213 C T COMMD2 Missense_Mutation p.E7K 0.50 tolerated(0.09) unknown(0) TCGA-FD-A6TC-01 3 150645819 150645819 C G CLRN1 Silent p.L214L 0.39 TCGA-FD-A6TC-01 3 154146532 154146532 C T GPR149 Silent p.E291E 0.20 TCGA-FD-A6TC-01 3 15642612 15642612 C T HACL1 Missense_Mutation p.M57I 0.11 deleterious(0.01) possibly_damaging(0.593) TCGA-FD-A6TC-01 3 158386893 158386893 C T LXN Missense_Mutation p.M133I 0.31 deleterious(0.01) possibly_damaging(0.613) TCGA-FD-A6TC-01 3 160474166 160474166 G C PPM1L Missense_Mutation p.E24Q 0.48 deleterious(0.01) possibly_damaging(0.908) TCGA-FD-A6TC-01 3 172080549 172080549 G T FNDC3B Silent p.L974L 0.52 TCGA-FD-A6TC-01 3 172353774 172353774 C T NCEH1 Missense_Mutation p.D221N 0.46 tolerated(0.11) probably_damaging(0.957) TCGA-FD-A6TC-01 3 172428676 172428676 C A NCEH1 Silent p.L65L 0.53 TCGA-FD-A6TC-01 3 179137281 179137281 T C GNB4 Missense_Mutation p.M37V 0.32 tolerated(0.99) benign(0) TCGA-FD-A6TC-01 3 180366143 180366143 A G CCDC39 Missense_Mutation p.V391A 0.15 tolerated(0.31) benign(0.008) TCGA-FD-A6TC-01 3 182631746 182631746 G A ATP11B Missense_Mutation p.R1139Q 0.27 tolerated_low_confidence(0.15) benign(0.012) TCGA-FD-A6TC-01 3 183210302 183210302 C T KLHL6 Missense_Mutation p.R515Q 0.25 tolerated(0.24) benign(0.002) TCGA-FD-A6TC-01 3 183390182 183390182 C A KLHL24 Silent p.I504I 0.40 TCGA-FD-A6TC-01 3 183493817 183493817 G A YEATS2 Missense_Mutation p.G828E 0.35 deleterious_low_confidence(0.01) benign(0.029) TCGA-FD-A6TC-01 3 189706730 189706730 C T LEPREL1 Silent p.L307L 0.29 TCGA-FD-A6TC-01 3 196754710 196754710 C G MFI2 Missense_Mutation p.E41Q 0.25 tolerated(0.55) benign(0.007) TCGA-FD-A6TC-01 3 19959798 19959798 G A EFHB Missense_Mutation p.S368F 0.25 deleterious(0.01) benign(0.107) TCGA-FD-A6TC-01 3 30842354 30842354 G A GADL1 Intron 0.37 TCGA-FD-A6TC-01 3 37105247 37105247 C A LRRFIP2 Nonsense_Mutation p.E579* 0.37 TCGA-FD-A6TC-01 3 38649676 38649676 C T SCN5A Missense_Mutation p.D322N 0.44 deleterious(0.05) probably_damaging(0.99) TCGA-FD-A6TC-01 3 38921498 38921498 G A SCN11A Silent p.F1112F 0.39 TCGA-FD-A6TC-01 3 423911 423911 G C CHL1 Missense_Mutation p.R642S 0.07 deleterious(0) probably_damaging(0.944) TCGA-FD-A6TC-01 3 42705288 42705288 G A ZBTB47 Splice_Site p.X580_splice 0.22 TCGA-FD-A6TC-01 3 42727855 42727855 G A KLHL40 Missense_Mutation p.E249K 0.52 deleterious(0.01) possibly_damaging(0.895) TCGA-FD-A6TC-01 3 43760023 43760023 G A ABHD5 Silent p.%3D 0.57 TCGA-FD-A6TC-01 3 46399012 46399012 C A CCR2 5'UTR 0.17 TCGA-FD-A6TC-01 3 46586733 46586733 C G LRRC2 Missense_Mutation p.E46Q 0.09 tolerated(0.27) probably_damaging(0.998) TCGA-FD-A6TC-01 3 46935466 46935466 G A PTH1R Missense_Mutation p.E49K 0.09 deleterious(0.04) benign(0.273) TCGA-FD-A6TC-01 3 48618718 48618718 C T COL7A1 Missense_Mutation p.G1625E 0.23 unknown(0) TCGA-FD-A6TC-01 3 49052461 49052461 G C WDR6 Missense_Mutation p.E1066Q 0.15 tolerated(0.31) benign(0.019) TCGA-FD-A6TC-01 3 49054908 49054908 C T DALRD3 Missense_Mutation p.E253K 0.14 tolerated(0.18) benign(0.066) TCGA-FD-A6TC-01 3 49064267 49064267 C T IMPDH2 Silent p.R224R 0.25 TCGA-FD-A6TC-01 3 49691051 49691051 C G BSN Silent p.L1354L 0.21 TCGA-FD-A6TC-01 3 52109989 52109989 G C POC1A Missense_Mutation p.L380V 0.41 deleterious(0.01) possibly_damaging(0.488) TCGA-FD-A6TC-01 3 52356504 52356504 C T DNAH1 Nonsense_Mutation p.Q16* 0.26 TCGA-FD-A6TC-01 3 52561319 52561319 G C NT5DC2 Missense_Mutation p.I370M 0.08 deleterious(0.01) probably_damaging(0.912) TCGA-FD-A6TC-01 3 52726939 52726939 G C GNL3 Silent p.P307P 0.28 TCGA-FD-A6TC-01 3 53133474 53133474 G C RFT1 Silent p.L377L 0.19 TCGA-FD-A6TC-01 3 64536672 64536672 C T ADAMTS9 Missense_Mutation p.E1589K 0.28 tolerated(0.5) possibly_damaging(0.523) TCGA-FD-A6TC-01 3 64554087 64554087 C T ADAMTS9 Missense_Mutation p.R1494Q 0.32 deleterious(0.05) possibly_damaging(0.905) TCGA-FD-A6TC-01 3 69168258 69168258 C T LMOD3 Silent p.L416L 0.16 TCGA-FD-A6TC-01 3 71102859 71102859 G T FOXP1 Silent p.L118L 0.16 TCGA-FD-A6TC-01 3 71745638 71745638 C T EIF4E3 Nonsense_Mutation p.W126* 0.32 TCGA-FD-A6TC-01 3 77638059 77638059 G A ROBO2 Silent p.K902K 0.13 TCGA-FD-A6TC-01 3 86115847 86115847 G A CADM2 Missense_Mutation p.E410K 0.21 deleterious(0) possibly_damaging(0.637) TCGA-FD-A6TC-01 3 97668807 97668808 - TCC MINA In_Frame_Ins p.R313dup 0.43 TCGA-FD-A6TC-01 3 98507305 98507305 C G ST3GAL6 Missense_Mutation p.Q252E 0.39 tolerated(1) benign(0.004) TCGA-FD-A6TC-01 3 9991575 9991575 G A PRRT3 Silent p.V75V 0.42 TCGA-FD-A6TC-01 4 106156087 106156087 G A TET2 Missense_Mutation p.E330K 0.61 deleterious(0.01) benign(0.146) TCGA-FD-A6TC-01 4 118006605 118006605 C T TRAM1L1 5'UTR 0.67 TCGA-FD-A6TC-01 4 119736298 119736298 G A SEC24D Missense_Mutation p.P229L 0.13 tolerated(0.06) benign(0.003) TCGA-FD-A6TC-01 4 122740632 122740632 C G CCNA2 Missense_Mutation p.L299F 0.15 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 4 126412334 126412334 G T FAT4 Missense_Mutation p.G4786V 0.41 probably_damaging(0.999) TCGA-FD-A6TC-01 4 128841828 128841828 C G MFSD8 Missense_Mutation p.R505T 0.54 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 4 145580934 145580934 G C HHIP Missense_Mutation p.E259Q 0.05 deleterious(0.02) benign(0.05) TCGA-FD-A6TC-01 4 152095862 152095862 C T SH3D19 Silent p.G218G 0.06 TCGA-FD-A6TC-01 4 155155964 155155964 C G DCHS2 Missense_Mutation p.L2825F 0.11 deleterious(0) probably_damaging(0.951) TCGA-FD-A6TC-01 4 15632388 15632388 C T FBXL5 Missense_Mutation p.E265K 0.34 tolerated(0.12) benign(0.04) TCGA-FD-A6TC-01 4 173150860 173150860 G C GALNTL6 Missense_Mutation p.L64F 0.74 tolerated(0.72) benign(0.434) TCGA-FD-A6TC-01 4 178359976 178359976 C T AGA Missense_Mutation p.E144K 0.53 deleterious(0.01) probably_damaging(0.974) TCGA-FD-A6TC-01 4 22438265 22438265 C G GPR125 Splice_Site p.X362_splice 0.12 TCGA-FD-A6TC-01 4 23803936 23803936 G C PPARGC1A Missense_Mutation p.I684M 0.15 tolerated(0.06) unknown(0) TCGA-FD-A6TC-01 4 2896321 2896321 C G ADD1 Missense_Mutation p.L202V 0.28 tolerated(0.14) benign(0.024) TCGA-FD-A6TC-01 4 2948193 2948193 C G NOP14 Missense_Mutation p.E527D 0.51 tolerated(0.38) benign(0.06) TCGA-FD-A6TC-01 4 3148619 3148619 C A HTT Missense_Mutation p.P1080Q 0.23 probably_damaging(0.961) TCGA-FD-A6TC-01 4 4322940 4322940 C T ZBTB49 Missense_Mutation p.S732F 0.38 deleterious(0.01) possibly_damaging(0.778) TCGA-FD-A6TC-01 4 47408854 47408854 T C GABRB1 Missense_Mutation p.F331L 0.54 deleterious(0.04) probably_damaging(0.993) TCGA-FD-A6TC-01 4 65147253 65147253 G A TECRL Missense_Mutation p.P286L 0.44 deleterious(0.04) probably_damaging(0.941) TCGA-FD-A6TC-01 4 6612673 6612673 G C MAN2B2 Missense_Mutation p.E776Q 0.16 tolerated(0.1) possibly_damaging(0.612) TCGA-FD-A6TC-01 4 68606261 68606261 G C GNRHR Missense_Mutation p.F308L 0.52 tolerated(1) possibly_damaging(0.705) TCGA-FD-A6TC-01 4 68784804 68784804 G A TMPRSS11A Missense_Mutation p.S283F 0.11 deleterious(0.02) benign(0.06) TCGA-FD-A6TC-01 4 69433695 69433695 G C UGT2B17 Missense_Mutation p.L170V 0.58 tolerated(1) benign(0.002) TCGA-FD-A6TC-01 4 69816788 69816788 C T UGT2A3 Missense_Mutation p.E231K 0.12 deleterious(0.05) benign(0.002) TCGA-FD-A6TC-01 4 70146246 70146246 C G UGT2B28 Missense_Mutation p.L10V 0.15 deleterious(0.05) benign(0.128) TCGA-FD-A6TC-01 4 71630291 71630291 C G RUFY3 Silent p.L190L 0.20 TCGA-FD-A6TC-01 4 737366 737366 C T PCGF3 Missense_Mutation p.R123W 0.50 deleterious(0.01) benign(0.12) TCGA-FD-A6TC-01 4 77660267 77660267 G A SHROOM3 Missense_Mutation p.R314Q 0.45 tolerated(0.9) benign(0.019) TCGA-FD-A6TC-01 4 79308853 79308853 C T FRAS1 Nonsense_Mutation p.Q1325* 0.33 TCGA-FD-A6TC-01 4 82378749 82378749 G A RASGEF1B Silent p.L68L 0.26 TCGA-FD-A6TC-01 4 8284198 8284198 C T HTRA3 Silent p.F140F 0.15 TCGA-FD-A6TC-01 4 83905546 83905546 G A LIN54 Missense_Mutation p.P151L 0.24 deleterious(0) possibly_damaging(0.907) TCGA-FD-A6TC-01 4 84328585 84328585 G C HELQ 3'UTR 0.11 TCGA-FD-A6TC-01 4 84374427 84374427 C G HELQ Silent p.V323V 0.18 TCGA-FD-A6TC-01 4 85742534 85742534 C T WDFY3 Missense_Mutation p.E432K 0.16 deleterious(0) probably_damaging(0.979) TCGA-FD-A6TC-01 4 87730976 87730976 G C PTPN13 Missense_Mutation p.D2385H 0.17 deleterious(0.01) probably_damaging(0.935) TCGA-FD-A6TC-01 4 88344048 88344048 C G NUDT9 5'UTR 0.11 TCGA-FD-A6TC-01 4 88394921 88394921 C T SPARCL1 3'UTR 0.16 TCGA-FD-A6TC-01 4 88533619 88533619 C G DSPP Missense_Mutation p.S94C 0.25 probably_damaging(0.979) TCGA-FD-A6TC-01 4 96761819 96761819 C T PDHA2 Missense_Mutation p.A173V 0.11 tolerated(0.09) benign(0.072) TCGA-FD-A6TC-01 5 1074713 1074713 C T SLC12A7 Missense_Mutation p.E681K 0.40 deleterious(0) probably_damaging(0.936) TCGA-FD-A6TC-01 5 1074714 1074714 C T SLC12A7 Silent p.V680V 0.38 TCGA-FD-A6TC-01 5 133494205 133494205 C T SKP1 Missense_Mutation p.E133K 0.31 deleterious(0.04) benign(0.445) TCGA-FD-A6TC-01 5 13714594 13714594 C T DNAH5 Missense_Mutation p.D4349N 0.29 benign(0.005) TCGA-FD-A6TC-01 5 139889312 139889312 C A ANKHD1 Missense_Mutation p.P1286T 0.33 possibly_damaging(0.876) TCGA-FD-A6TC-01 5 140023482 140023482 C T TMCO6 Silent p.L346L 0.51 TCGA-FD-A6TC-01 5 140221939 140221939 G C PCDHA8 Missense_Mutation p.D345H 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FD-A6TC-01 5 140537822 140537822 G A PCDHB17 3'UTR 0.51 TCGA-FD-A6TC-01 5 140537861 140537861 G C PCDHB17 3'UTR 0.67 TCGA-FD-A6TC-01 5 140559004 140559004 G A PCDHB8 Silent p.E463E 0.39 TCGA-FD-A6TC-01 5 140769062 140769062 G A PCDHGB4 Silent p.S537S 0.63 TCGA-FD-A6TC-01 5 1409901 1409901 G A SLC6A3 Missense_Mutation p.R445C 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 5 141335011 141335011 C T PCDH12 Silent p.A802A 0.33 TCGA-FD-A6TC-01 5 147023724 147023724 A C JAKMIP2 Nonsense_Mutation p.L374* 0.58 TCGA-FD-A6TC-01 5 150901481 150901481 C T FAT2 Missense_Mutation p.R3558Q 0.48 benign(0.009) TCGA-FD-A6TC-01 5 150922290 150922290 C G FAT2 Missense_Mutation p.D2800H 0.62 possibly_damaging(0.823) TCGA-FD-A6TC-01 5 156641251 156641251 G C ITK Missense_Mutation p.W125C 0.43 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 5 162868224 162868224 G A CCNG1 Missense_Mutation p.M135I 0.42 tolerated(0.33) benign(0.035) TCGA-FD-A6TC-01 5 16701418 16701418 G C MYO10 Missense_Mutation p.S1029C 0.26 deleterious_low_confidence(0.05) probably_damaging(0.993) TCGA-FD-A6TC-01 5 170162837 170162837 C T KCNIP1 3'Flank 0.64 TCGA-FD-A6TC-01 5 170814952 170814952 G A NPM1 5'UTR 0.55 TCGA-FD-A6TC-01 5 172660171 172660171 C T NKX2-5 Missense_Mutation p.E126K 0.50 tolerated(0.68) benign(0.001) TCGA-FD-A6TC-01 5 176636970 176636970 G A NSD1 Missense_Mutation p.E524K 0.65 deleterious_low_confidence(0) benign(0.21) TCGA-FD-A6TC-01 5 176764246 176764246 C G LMAN2 Missense_Mutation p.M227I 0.19 tolerated(0.26) benign(0.405) TCGA-FD-A6TC-01 5 176823849 176823849 C T SLC34A1 Silent p.I430I 0.67 TCGA-FD-A6TC-01 5 180665303 180665303 C G GNB2L1 Intron 0.28 TCGA-FD-A6TC-01 5 195453 195453 C G LRRC14B Silent p.L510L 0.31 TCGA-FD-A6TC-01 5 31545814 31545814 G A C5orf22 Missense_Mutation p.E352K 0.34 tolerated(0.14) possibly_damaging(0.622) TCGA-FD-A6TC-01 5 32126485 32126485 G C GOLPH3 Missense_Mutation p.H244D 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-FD-A6TC-01 5 34922655 34922655 C T BRIX1 Missense_Mutation p.S133L 0.35 tolerated(0.13) benign(0.008) TCGA-FD-A6TC-01 5 35800118 35800118 G C SPEF2 Missense_Mutation p.D1627H 0.35 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 5 35876682 35876682 G A IL7R 3'UTR 0.67 TCGA-FD-A6TC-01 5 36114609 36114609 C A LMBRD2 Missense_Mutation p.M519I 0.31 deleterious(0.01) benign(0.301) TCGA-FD-A6TC-01 5 37183092 37183092 C T C5orf42 Missense_Mutation p.E1731K 0.37 deleterious(0.03) probably_damaging(0.917) TCGA-FD-A6TC-01 5 38482260 38482260 G C LIFR Missense_Mutation p.L911V 0.35 tolerated(1) benign(0.009) TCGA-FD-A6TC-01 5 43298773 43298773 C T HMGCS1 Missense_Mutation p.D99N 0.38 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 5 44388753 44388753 G C FGF10 Nonsense_Mutation p.S11* 0.32 TCGA-FD-A6TC-01 5 482665 482665 G A SLC9A3 Nonsense_Mutation p.Q452* 0.33 TCGA-FD-A6TC-01 5 53751951 53751951 C G HSPB3 Nonsense_Mutation p.S111* 0.26 TCGA-FD-A6TC-01 5 68550438 68550438 G C CDK7 Missense_Mutation p.R57T 0.19 tolerated(0.13) probably_damaging(0.987) TCGA-FD-A6TC-01 5 79026837 79026837 C G CMYA5 Missense_Mutation p.S750C 0.38 benign(0.129) TCGA-FD-A6TC-01 5 908553 908553 G A TRIP13 Silent p.L281L 0.25 TCGA-FD-A6TC-01 5 95733093 95733093 G A PCSK1 Missense_Mutation p.H557Y 0.25 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 5 95764942 95764942 G C PCSK1 Missense_Mutation p.T87S 0.32 tolerated(0.74) probably_damaging(0.997) TCGA-FD-A6TC-01 6 100868708 100868708 G C SIM1 Silent p.L375L 0.41 TCGA-FD-A6TC-01 6 111982848 111982848 C T FYN 3'UTR 0.54 TCGA-FD-A6TC-01 6 123332258 123332258 C A CLVS2 Missense_Mutation p.S173Y 0.69 tolerated(0.09) probably_damaging(0.979) TCGA-FD-A6TC-01 6 132029972 132029972 A G CTAGE9 Missense_Mutation p.M729T 0.19 tolerated(0.05) possibly_damaging(0.462) TCGA-FD-A6TC-01 6 133004432 133004432 C T VNN1 Silent p.L463L 0.20 TCGA-FD-A6TC-01 6 133047901 133047901 T C VNN3 Intron 0.55 TCGA-FD-A6TC-01 6 135732643 135732643 C A AHI1 Missense_Mutation p.G935V 0.47 deleterious(0.02) benign(0.424) TCGA-FD-A6TC-01 6 136476807 136476807 C T PDE7B Silent p.L208L 0.31 TCGA-FD-A6TC-01 6 136599714 136599714 G C BCLAF1 Missense_Mutation p.S102C 0.53 deleterious_low_confidence(0) benign(0.341) TCGA-FD-A6TC-01 6 152652902 152652902 C T SYNE1 Silent p.L4306L 0.55 TCGA-FD-A6TC-01 6 155485633 155485633 G C TIAM2 Missense_Mutation p.E705Q 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-FD-A6TC-01 6 157150397 157150397 C T ARID1B Nonsense_Mutation p.Q527* 0.24 TCGA-FD-A6TC-01 6 160230156 160230156 C A PNLDC1 Missense_Mutation p.S239Y 0.48 tolerated(0.06) benign(0.03) TCGA-FD-A6TC-01 6 160505216 160505216 C T IGF2R Missense_Mutation p.S2023L 0.56 deleterious(0.02) possibly_damaging(0.56) TCGA-FD-A6TC-01 6 17601098 17601098 C T FAM8A1 Missense_Mutation p.S153L 0.35 tolerated(0.24) benign(0.017) TCGA-FD-A6TC-01 6 26273275 26273275 G A HIST1H2BI Silent p.K24K 0.12 TCGA-FD-A6TC-01 6 26370559 26370559 C G BTN3A2 Missense_Mutation p.S148C 0.17 deleterious(0) probably_damaging(0.959) TCGA-FD-A6TC-01 6 27107230 27107230 C G HIST1H4I Missense_Mutation p.S48C 0.42 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 6 27114978 27114981 TTCA - HIST1H2AH Frame_Shift_Del p.L24Rfs*35 0.40 TCGA-FD-A6TC-01 6 27806029 27806029 C T HIST1H2AK Missense_Mutation p.R30Q 0.16 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-FD-A6TC-01 6 27806487 27806487 G A HIST1H2BN Silent p.K16K 0.32 TCGA-FD-A6TC-01 6 29430048 29430048 C A OR2H1 Missense_Mutation p.P168T 0.29 tolerated(0.07) possibly_damaging(0.595) TCGA-FD-A6TC-01 6 30037181 30037181 G C PPP1R11 3'UTR 0.32 TCGA-FD-A6TC-01 6 30587369 30587369 G A MRPS18B Missense_Mutation p.E60K 0.20 tolerated(0.33) benign(0.021) TCGA-FD-A6TC-01 6 3154003 3154003 G C TUBB2A 3'UTR 0.48 TCGA-FD-A6TC-01 6 31675389 31675389 G A LY6G6F Silent p.R69R 0.23 TCGA-FD-A6TC-01 6 32053661 32053663 TCA - TNXB In_Frame_Del p.H1004_E1005delinsQ 0.38 TCGA-FD-A6TC-01 6 32053680 32053680 C T TNXB Missense_Mutation p.E999K 0.30 benign(0.32) TCGA-FD-A6TC-01 6 33371133 33371133 C G KIFC1 Missense_Mutation p.A98G 0.45 deleterious(0.05) benign(0.069) TCGA-FD-A6TC-01 6 34846442 34846442 C A TAF11 Missense_Mutation p.M187I 0.15 tolerated(0.2) benign(0.027) TCGA-FD-A6TC-01 6 36063772 36063772 C T MAPK14 Intron 0.29 TCGA-FD-A6TC-01 6 36651995 36651995 G - CDKN1A Frame_Shift_Del p.G40Afs*108 0.52 TCGA-FD-A6TC-01 6 38771051 38771051 G C DNAH8 Missense_Mutation p.E783Q 0.16 benign(0.131) TCGA-FD-A6TC-01 6 39874456 39874456 C G MOCS1 3'UTR 0.48 TCGA-FD-A6TC-01 6 398908 398908 A G IRF4 Missense_Mutation p.R240G 0.19 tolerated(0.08) possibly_damaging(0.784) TCGA-FD-A6TC-01 6 41655684 41655684 G T TFEB Missense_Mutation p.S211Y 0.40 deleterious(0) probably_damaging(0.909) TCGA-FD-A6TC-01 6 42713649 42713649 C G TBCC Missense_Mutation p.E55Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 6 42713668 42713668 C T TBCC Silent p.Q48Q 0.27 TCGA-FD-A6TC-01 6 42833152 42833152 G C GLTSCR1L Missense_Mutation p.E1070Q 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A6TC-01 6 42988516 42988516 C T KLHDC3 3'UTR 0.32 TCGA-FD-A6TC-01 6 43189453 43189453 C T CUL9 Silent p.F2261F 0.33 TCGA-FD-A6TC-01 6 43189468 43189468 C T CUL9 Silent p.L2266L 0.35 TCGA-FD-A6TC-01 6 43272514 43272514 G C SLC22A7 3'UTR 0.36 TCGA-FD-A6TC-01 6 51524080 51524080 C T PKHD1 Missense_Mutation p.R3615K 0.43 tolerated(0.93) benign(0.001) TCGA-FD-A6TC-01 6 55192348 55192348 C T GFRAL 5'UTR 0.31 TCGA-FD-A6TC-01 6 70861288 70861288 G A COL19A1 Splice_Site p.X680_splice 0.38 TCGA-FD-A6TC-01 6 7862676 7862676 G A BMP6 Silent p.Q383Q 0.44 TCGA-FD-A6TC-01 6 82933179 82933179 G C IBTK Missense_Mutation p.Q368E 0.49 deleterious(0) benign(0.271) TCGA-FD-A6TC-01 6 83891635 83891635 C T PGM3 Missense_Mutation p.D231N 0.37 tolerated(0.41) benign(0.019) TCGA-FD-A6TC-01 6 99885210 99885210 C G USP45 Missense_Mutation p.M742I 0.18 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TC-01 7 100682141 100682141 G C MUC17 Missense_Mutation p.D2482H 0.27 probably_damaging(0.993) TCGA-FD-A6TC-01 7 100683350 100683350 G C MUC17 Missense_Mutation p.E2885Q 0.20 possibly_damaging(0.542) TCGA-FD-A6TC-01 7 100683527 100683527 G C MUC17 Missense_Mutation p.E2944Q 0.18 probably_damaging(0.993) TCGA-FD-A6TC-01 7 100865982 100865982 C G ZNHIT1 Missense_Mutation p.F40L 0.17 tolerated(0.1) benign(0.014) TCGA-FD-A6TC-01 7 102968139 102968139 C T DNAJC2 Missense_Mutation p.E132K 0.22 tolerated(0.11) benign(0.369) TCGA-FD-A6TC-01 7 124493146 124493146 G C POT1 Nonsense_Mutation p.S250* 0.44 TCGA-FD-A6TC-01 7 127013568 127013568 C T ZNF800 Missense_Mutation p.E608K 0.25 deleterious(0.01) possibly_damaging(0.645) TCGA-FD-A6TC-01 7 127225285 127225285 G C GCC1 5'UTR 0.23 TCGA-FD-A6TC-01 7 128097318 128097318 C G HILPDA 5'UTR 0.26 TCGA-FD-A6TC-01 7 128441368 128441368 G C CCDC136 Missense_Mutation p.D159H 0.52 deleterious(0) probably_damaging(0.962) TCGA-FD-A6TC-01 7 128484747 128484747 G A FLNC Silent p.L1076L 0.52 TCGA-FD-A6TC-01 7 129770648 129770648 G C KLHDC10 3'UTR 0.37 TCGA-FD-A6TC-01 7 129929512 129929512 G T CPA2 Missense_Mutation p.Q395H 0.48 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 7 130356511 130356511 C T TSGA13 Missense_Mutation p.M216I 0.18 tolerated(0.44) benign(0) TCGA-FD-A6TC-01 7 13978849 13978849 C T ETV1 Silent p.L86L 0.25 TCGA-FD-A6TC-01 7 141708410 141708410 C G MGAM Missense_Mutation p.P78A 0.22 tolerated(0.07) benign(0.009) TCGA-FD-A6TC-01 7 143701887 143701887 C T OR6B1 Silent p.F266F 0.20 TCGA-FD-A6TC-01 7 146997349 146997349 C T CNTNAP2 Nonsense_Mutation p.Q489* 0.42 TCGA-FD-A6TC-01 7 149509070 149509070 C T SSPO RNA 0.21 TCGA-FD-A6TC-01 7 150325581 150325581 C G GIMAP6 Missense_Mutation p.Q35H 0.21 tolerated(0.07) possibly_damaging(0.525) TCGA-FD-A6TC-01 7 150707855 150707855 G A NOS3 Silent p.E952E 0.11 TCGA-FD-A6TC-01 7 150715811 150715811 G C ATG9B Silent p.L538L 0.39 TCGA-FD-A6TC-01 7 150779267 150779267 C T TMUB1 Silent p.L128L 0.22 TCGA-FD-A6TC-01 7 151873559 151873559 G T KMT2C Silent p.L2993L 0.17 TCGA-FD-A6TC-01 7 155599064 155599064 C T SHH Missense_Mutation p.R163H 0.44 deleterious(0) probably_damaging(0.964) TCGA-FD-A6TC-01 7 2274891 2274891 G A FTSJ2 Missense_Mutation p.R203W 0.37 tolerated(0.05) benign(0.019) TCGA-FD-A6TC-01 7 22769243 22769243 G A IL6 Missense_Mutation p.M145I 0.15 tolerated(0.23) benign(0.004) TCGA-FD-A6TC-01 7 23547131 23547131 C T TRA2A Missense_Mutation p.M183I 0.35 tolerated(0.2) benign(0.127) TCGA-FD-A6TC-01 7 24720077 24720077 G C MPP6 Missense_Mutation p.E462Q 0.13 deleterious(0.01) possibly_damaging(0.795) TCGA-FD-A6TC-01 7 27224432 27224432 G A HOXA11 Missense_Mutation p.S111L 0.75 tolerated(0.09) benign(0.01) TCGA-FD-A6TC-01 7 34697946 34697946 C T NPSR1 5'UTR 0.29 TCGA-FD-A6TC-01 7 36193942 36193942 C T EEPD1 Silent p.S3S 0.33 TCGA-FD-A6TC-01 7 37780794 37780794 G C GPR141 Missense_Mutation p.E267Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 7 41739585 41739585 C T INHBA Missense_Mutation p.G130R 0.19 deleterious(0) possibly_damaging(0.697) TCGA-FD-A6TC-01 7 44553228 44553228 G C NPC1L1 Missense_Mutation p.L1300V 0.24 tolerated(0.69) benign(0.008) TCGA-FD-A6TC-01 7 47906119 47906119 C G PKD1L1 Silent p.L1330L 0.42 TCGA-FD-A6TC-01 7 48682881 48682881 C T ABCA13 Intron 0.48 TCGA-FD-A6TC-01 7 50672070 50672070 C T GRB10 Missense_Mutation p.R465Q 0.32 deleterious(0) probably_damaging(0.909) TCGA-FD-A6TC-01 7 5330386 5330386 G A SLC29A4 Missense_Mutation p.D65N 0.30 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 7 54614659 54614659 G C VSTM2A Missense_Mutation p.R89T 0.25 tolerated(0.13) benign(0.226) TCGA-FD-A6TC-01 7 64167319 64167319 G C ZNF107 Missense_Mutation p.E213Q 0.39 deleterious(0.03) probably_damaging(0.943) TCGA-FD-A6TC-01 7 64292700 64292700 G C ZNF138 3'Flank 0.50 TCGA-FD-A6TC-01 7 65419249 65419249 G A VKORC1L1 Missense_Mutation p.E165K 0.41 tolerated(0.1) benign(0.31) TCGA-FD-A6TC-01 7 73245798 73245798 C G CLDN4 Missense_Mutation p.I89M 0.40 deleterious(0.05) benign(0.271) TCGA-FD-A6TC-01 7 73246189 73246189 C G CLDN4 3'UTR 0.30 TCGA-FD-A6TC-01 7 73954226 73954226 G C GTF2IRD1 Missense_Mutation p.E548Q 0.19 deleterious(0.05) benign(0.262) TCGA-FD-A6TC-01 7 7635958 7635958 G C MIOS Missense_Mutation p.R756T 0.15 tolerated(0.28) benign(0.07) TCGA-FD-A6TC-01 7 76888351 76888351 G A CCDC146 Missense_Mutation p.G242R 0.19 tolerated(0.23) benign(0.022) TCGA-FD-A6TC-01 7 77006210 77006210 G C GSAP Missense_Mutation p.I232M 0.30 deleterious(0.03) benign(0.279) TCGA-FD-A6TC-01 7 81374404 81374404 G A HGF Nonsense_Mutation p.R220* 0.25 TCGA-FD-A6TC-01 7 87104718 87104718 C G ABCB4 Missense_Mutation p.E22Q 0.13 tolerated(0.14) benign(0.001) TCGA-FD-A6TC-01 7 87762074 87762074 T C ADAM22 Intron 0.50 TCGA-FD-A6TC-01 7 98453654 98453654 G A TMEM130 Missense_Mutation p.S235L 0.51 tolerated(0.07) benign(0.031) TCGA-FD-A6TC-01 7 98547453 98547453 G A TRRAP Silent p.L1701L 0.34 TCGA-FD-A6TC-01 7 99097431 99097431 C T ZNF394 Missense_Mutation p.E96K 0.57 deleterious(0) probably_damaging(0.99) TCGA-FD-A6TC-01 8 101076067 101076067 G A RGS22 Missense_Mutation p.S310L 0.39 tolerated(0.12) benign(0.007) TCGA-FD-A6TC-01 8 104897674 104897674 C T RIMS2 Nonsense_Mutation p.Q283* 0.33 TCGA-FD-A6TC-01 8 105405047 105405047 C A DPYS Nonsense_Mutation p.E470* 0.20 TCGA-FD-A6TC-01 8 119122827 119122827 G C EXT1 Silent p.L153L 0.24 TCGA-FD-A6TC-01 8 119945473 119945473 C T TNFRSF11B Missense_Mutation p.E33K 0.26 deleterious(0.01) benign(0.001) TCGA-FD-A6TC-01 8 124358919 124358919 C T ATAD2 Missense_Mutation p.G762R 0.29 tolerated(0.15) benign(0.013) TCGA-FD-A6TC-01 8 124408476 124408476 G A ATAD2 Missense_Mutation p.S41L 0.33 tolerated_low_confidence(0.11) benign(0.001) TCGA-FD-A6TC-01 8 124408511 124408511 G C ATAD2 Silent p.L29L 0.27 TCGA-FD-A6TC-01 8 12952361 12952361 C G DLC1 Missense_Mutation p.D1145H 0.36 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 8 131826425 131826425 C G ADCY8 Missense_Mutation p.E935Q 0.29 tolerated(0.66) benign(0.219) TCGA-FD-A6TC-01 8 139153547 139153547 G A FAM135B Silent p.L1228L 0.18 TCGA-FD-A6TC-01 8 139255187 139255187 C G FAM135B Missense_Mutation p.E223Q 0.12 deleterious(0.03) benign(0.218) TCGA-FD-A6TC-01 8 144997172 144997172 C T PLEC Missense_Mutation p.E2446K 0.62 probably_damaging(0.993) TCGA-FD-A6TC-01 8 144997248 144997248 C G PLEC Silent p.L2420L 0.29 TCGA-FD-A6TC-01 8 144998321 144998321 C T PLEC Missense_Mutation p.E2063K 0.38 unknown(0) TCGA-FD-A6TC-01 8 146067806 146067806 G C ZNF7 Missense_Mutation p.E438D 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TC-01 8 15397915 15397915 G A TUSC3 5'UTR 0.91 TCGA-FD-A6TC-01 8 23709009 23709009 G A STC1 Silent p.I99I 0.65 TCGA-FD-A6TC-01 8 2965252 2965252 C T CSMD1 Missense_Mutation p.D2275N 0.23 possibly_damaging(0.756) TCGA-FD-A6TC-01 8 37553684 37553684 C T ZNF703 Missense_Mutation p.L63F 0.43 deleterious(0.01) benign(0.393) TCGA-FD-A6TC-01 8 43014177 43014177 T C HGSNAT Silent p.D161D 0.21 TCGA-FD-A6TC-01 8 57213881 57213881 C T SDR16C5 3'UTR 0.23 TCGA-FD-A6TC-01 8 59764173 59764173 G A TOX Silent p.P201P 0.53 TCGA-FD-A6TC-01 8 61765933 61765933 G A CHD7 Missense_Mutation p.E2217K 0.18 benign(0.013) TCGA-FD-A6TC-01 8 68113704 68113704 C G ARFGEF1 Missense_Mutation p.L1755F 0.18 deleterious(0.03) probably_damaging(0.924) TCGA-FD-A6TC-01 8 68950492 68950492 C T PREX2 Silent p.F268F 0.52 TCGA-FD-A6TC-01 8 74204562 74204562 C T RPL7 Missense_Mutation p.E68K 0.20 tolerated(0.16) benign(0.367) TCGA-FD-A6TC-01 8 75924774 75924774 C T CRISPLD1 Missense_Mutation p.A122V 0.10 tolerated(1) benign(0.05) TCGA-FD-A6TC-01 8 76471198 76471198 T C HNF4G Missense_Mutation p.I340T 0.10 deleterious(0) probably_damaging(0.961) TCGA-FD-A6TC-01 8 77761793 77761793 C G ZFHX4 Missense_Mutation p.R1231G 0.21 benign(0.433) TCGA-FD-A6TC-01 8 87568409 87568409 C T CPNE3 Missense_Mutation p.S445F 0.44 deleterious(0) possibly_damaging(0.861) TCGA-FD-A6TC-01 8 88885584 88885584 G A DCAF4L2 Nonsense_Mutation p.Q206* 0.17 TCGA-FD-A6TC-01 8 91013777 91013777 C T DECR1 Silent p.L19L 0.19 TCGA-FD-A6TC-01 8 97157162 97157162 G A GDF6 Missense_Mutation p.R333W 0.40 tolerated(0.06) benign(0.097) TCGA-FD-A6TC-01 8 97251787 97251787 C T MTERFD1 Missense_Mutation p.E396K 0.51 deleterious(0.03) benign(0.011) TCGA-FD-A6TC-01 8 97892096 97892096 G C CPQ Missense_Mutation p.D238H 0.26 deleterious(0.01) probably_damaging(0.934) TCGA-FD-A6TC-01 8 99169894 99169894 G A POP1 Missense_Mutation p.E824K 0.47 tolerated(0.5) benign(0.002) TCGA-FD-A6TC-01 9 101552768 101552768 C T ANKS6 Silent p.V160V 0.21 TCGA-FD-A6TC-01 9 104133647 104133647 C G BAAT Missense_Mutation p.D14H 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TC-01 9 104356682 104356682 G C PPP3R2 3'UTR 0.30 TCGA-FD-A6TC-01 9 113449467 113449467 G C MUSK Missense_Mutation p.D93H 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A6TC-01 9 113538093 113538093 C G MUSK Missense_Mutation p.L404V 0.37 tolerated(0.11) benign(0.031) TCGA-FD-A6TC-01 9 115930782 115930782 C G FKBP15 Silent p.L1180L 0.12 TCGA-FD-A6TC-01 9 115950759 115950759 G C FKBP15 Missense_Mutation p.L396V 0.15 tolerated(0.16) benign(0.014) TCGA-FD-A6TC-01 9 116151732 116151732 C G ALAD Missense_Mutation p.E263Q 0.12 tolerated(0.24) benign(0.046) TCGA-FD-A6TC-01 9 116153168 116153168 C G ALAD Missense_Mutation p.E103Q 0.49 tolerated(1) benign(0.002) TCGA-FD-A6TC-01 9 123151461 123151461 G C CDK5RAP2 3'UTR 0.23 TCGA-FD-A6TC-01 9 123527035 123527035 G A FBXW2 Silent p.I389I 0.38 TCGA-FD-A6TC-01 9 123628326 123628326 G C PHF19 Missense_Mutation p.I253M 0.14 deleterious(0.02) possibly_damaging(0.77) TCGA-FD-A6TC-01 9 123858779 123858779 T C CNTRL Missense_Mutation p.W187R 0.23 probably_damaging(0.994) TCGA-FD-A6TC-01 9 124979462 124979462 G A LHX6 Silent p.F189F 0.31 TCGA-FD-A6TC-01 9 125330588 125330588 G C OR1L8 Missense_Mutation p.Q57E 0.15 deleterious(0) benign(0.41) TCGA-FD-A6TC-01 9 125486868 125486868 G A OR1L4 Silent p.V200V 0.13 TCGA-FD-A6TC-01 9 125512726 125512726 G A OR1L6 Silent p.V200V 0.51 TCGA-FD-A6TC-01 9 129377731 129377731 G C LMX1B Missense_Mutation p.R70P 0.14 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 9 130223461 130223461 G A LRSAM1 Missense_Mutation p.V111M 0.42 deleterious(0.04) benign(0.079) TCGA-FD-A6TC-01 9 131267111 131267111 G A GLE1 Silent p.E9E 0.44 TCGA-FD-A6TC-01 9 131396190 131396190 C A WDR34 Nonsense_Mutation p.E482* 0.18 TCGA-FD-A6TC-01 9 135523593 135523593 G A DDX31 Missense_Mutation p.S422L 0.33 deleterious(0.01) possibly_damaging(0.656) TCGA-FD-A6TC-01 9 136260834 136260834 C A C9orf96 Missense_Mutation p.F270L 0.14 tolerated(0.22) benign(0.048) TCGA-FD-A6TC-01 9 136340614 136340614 C T SLC2A6 Missense_Mutation p.E228K 0.21 tolerated(0.36) benign(0.164) TCGA-FD-A6TC-01 9 139568262 139568262 G C AGPAT2 Missense_Mutation p.S260C 0.38 deleterious(0) probably_damaging(0.98) TCGA-FD-A6TC-01 9 139740992 139740992 G A C9orf172 Missense_Mutation p.R709H 0.55 deleterious(0.03) benign(0.002) TCGA-FD-A6TC-01 9 139914854 139914854 G C ABCA2 Silent p.L453L 0.17 TCGA-FD-A6TC-01 9 139943283 139943283 G C ENTPD2 Silent p.L438L 0.50 TCGA-FD-A6TC-01 9 140082487 140082487 C A ANAPC2 Silent p.L62L 0.36 TCGA-FD-A6TC-01 9 140083665 140083665 C G SSNA1 Missense_Mutation p.S67C 0.13 deleterious(0.04) possibly_damaging(0.849) TCGA-FD-A6TC-01 9 140351949 140351949 G C NSMF Missense_Mutation p.R180G 0.39 deleterious_low_confidence(0.05) benign(0.165) TCGA-FD-A6TC-01 9 140441822 140441822 G C PNPLA7 Silent p.L44L 0.08 TCGA-FD-A6TC-01 9 140941411 140941411 C T CACNA1B Missense_Mutation p.L1157F 0.52 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TC-01 9 15468978 15468978 C G PSIP1 Missense_Mutation p.E395Q 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A6TC-01 9 16419406 16419406 C T BNC2 Missense_Mutation p.D961N 0.22 deleterious(0) probably_damaging(0.915) TCGA-FD-A6TC-01 9 17388239 17388239 G C CNTLN Missense_Mutation p.Q689H 0.23 deleterious(0) possibly_damaging(0.853) TCGA-FD-A6TC-01 9 19093229 19093229 G A HAUS6 Missense_Mutation p.H126Y 0.15 deleterious(0) probably_damaging(0.953) TCGA-FD-A6TC-01 9 19376256 19376256 G C RPS6 3'UTR 0.32 TCGA-FD-A6TC-01 9 26999666 26999666 G C LRRC19 Silent p.L9L 0.34 TCGA-FD-A6TC-01 9 33886926 33886926 C T UBE2R2 Silent p.F75F 0.26 TCGA-FD-A6TC-01 9 34126369 34126369 C T DCAF12 Missense_Mutation p.D21N 0.24 tolerated_low_confidence(0.31) benign(0.025) TCGA-FD-A6TC-01 9 34241261 34241261 G A UBAP1 Missense_Mutation p.E144K 0.20 tolerated(0.07) probably_damaging(0.94) TCGA-FD-A6TC-01 9 35679230 35679230 C G CA9 Missense_Mutation p.S319C 0.16 deleterious(0.01) possibly_damaging(0.763) TCGA-FD-A6TC-01 9 35808547 35808547 C A NPR2 Silent p.L918L 0.40 TCGA-FD-A6TC-01 9 40772514 40772514 C T ZNF658 Missense_Mutation p.E921K 0.17 tolerated(0.59) benign(0.253) TCGA-FD-A6TC-01 9 429827 429827 C G DOCK8 Silent p.L1533L 0.54 TCGA-FD-A6TC-01 9 4663290 4663290 G A PPAPDC2 3'UTR 0.28 TCGA-FD-A6TC-01 9 6013240 6013240 C T RANBP6 Missense_Mutation p.D790N 0.22 tolerated(0.49) benign(0.009) TCGA-FD-A6TC-01 9 7011859 7011859 C T KDM4C Silent p.L650L 0.22 TCGA-FD-A6TC-01 9 70490099 70490099 G A CBWD5 5'UTR 0.22 TCGA-FD-A6TC-01 9 71098851 71098851 G C PGM5 Missense_Mutation p.D456H 0.35 deleterious(0.01) possibly_damaging(0.506) TCGA-FD-A6TC-01 9 8518229 8518229 C T PTPRD Missense_Mutation p.D388N 0.20 deleterious(0.03) benign(0.375) TCGA-FD-A6TC-01 9 86616344 86616344 G A RMI1 Missense_Mutation p.G148E 0.13 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TC-01 9 87285753 87285753 C T NTRK2 Silent p.F30F 0.34 TCGA-FD-A6TC-01 9 88193849 88193849 G T AGTPBP1 Missense_Mutation p.Q1070K 0.37 deleterious(0.01) possibly_damaging(0.537) TCGA-FD-A6TC-01 9 88207608 88207608 G C AGTPBP1 Nonsense_Mutation p.S772* 0.24 TCGA-FD-A6TC-01 9 99521168 99521168 C T ZNF510 Silent p.R648R 0.25 TCGA-FD-A6TC-01 X 100177842 100177842 G A XKRX Missense_Mutation p.P182S 0.33 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 X 101857853 101857853 C A ARMCX5 Silent p.R262R 0.16 TCGA-FD-A6TC-01 X 102004092 102004092 G A BHLHB9 Missense_Mutation p.E57K 0.12 deleterious(0.04) benign(0.035) TCGA-FD-A6TC-01 X 10417654 10417654 C T MID1 Silent p.V586V 0.22 TCGA-FD-A6TC-01 X 10450524 10450524 C T MID1 Missense_Mutation p.E337K 0.26 tolerated(0.21) benign(0.069) TCGA-FD-A6TC-01 X 10535264 10535264 G T MID1 Silent p.A108A 0.16 TCGA-FD-A6TC-01 X 106065309 106065309 G C TBC1D8B Missense_Mutation p.E155Q 0.29 tolerated(0.13) benign(0.142) TCGA-FD-A6TC-01 X 11206912 11206912 G C ARHGAP6 Nonsense_Mutation p.S338* 0.45 TCGA-FD-A6TC-01 X 118222276 118222276 C A KIAA1210 Nonsense_Mutation p.E973* 0.08 TCGA-FD-A6TC-01 X 119293112 119293112 G T RHOXF2 Nonsense_Mutation p.E91* 0.26 TCGA-FD-A6TC-01 X 119387874 119387874 C G ZBTB33 Missense_Mutation p.L202V 0.14 tolerated(1) benign(0.038) TCGA-FD-A6TC-01 X 119388379 119388379 C G ZBTB33 Nonsense_Mutation p.S370* 0.30 TCGA-FD-A6TC-01 X 119512534 119512534 G C ATP1B4 Missense_Mutation p.R273T 0.13 tolerated(0.08) benign(0.012) TCGA-FD-A6TC-01 X 122756955 122756955 C G THOC2 Splice_Site p.X1228_splice 0.13 TCGA-FD-A6TC-01 X 122772797 122772797 C T THOC2 Missense_Mutation p.D610N 0.35 deleterious(0) probably_damaging(1) TCGA-FD-A6TC-01 X 125299413 125299413 G A DCAF12L2 Silent p.A165A 0.32 TCGA-FD-A6TC-01 X 128782635 128782635 G A APLN Missense_Mutation p.R68C 0.36 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TC-01 X 129281744 129281744 G A AIFM1 Missense_Mutation p.R153W 0.35 deleterious(0) probably_damaging(0.94) TCGA-FD-A6TC-01 X 129281848 129281848 G A AIFM1 Missense_Mutation p.S118L 0.37 tolerated(0.23) benign(0) TCGA-FD-A6TC-01 X 134023168 134023168 C T MOSPD1 3'UTR 0.16 TCGA-FD-A6TC-01 X 134477261 134477261 G C ZNF75D 5'UTR 0.25 TCGA-FD-A6TC-01 X 134988691 134988691 C T SAGE1 Silent p.P239P 0.05 TCGA-FD-A6TC-01 X 135430470 135430470 G A GPR112 Silent p.V1535V 0.14 TCGA-FD-A6TC-01 X 135592320 135592320 G A HTATSF1 Missense_Mutation p.R335K 0.36 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TC-01 X 13776466 13776466 C T OFD1 Missense_Mutation p.S518F 0.18 deleterious(0.03) probably_damaging(0.957) TCGA-FD-A6TC-01 X 13776489 13776489 C G OFD1 Missense_Mutation p.L526V 0.20 deleterious(0.03) possibly_damaging(0.496) TCGA-FD-A6TC-01 X 142717278 142717278 C T SLITRK4 Silent p.L549L 0.41 TCGA-FD-A6TC-01 X 144904150 144904150 C A SLITRK2 Silent p.L69L 0.24 TCGA-FD-A6TC-01 X 152128414 152128414 C T ZNF185 Silent p.F558F 0.26 TCGA-FD-A6TC-01 X 152481969 152481969 C T MAGEA1 3'UTR 0.50 TCGA-FD-A6TC-01 X 153296576 153296576 C T MECP2 Missense_Mutation p.E247K 0.31 deleterious(0.01) benign(0.35) TCGA-FD-A6TC-01 X 153608352 153608352 G C EMD Missense_Mutation p.E80Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TC-01 X 153780359 153780359 C G IKBKG Missense_Mutation p.P116A 0.43 deleterious(0.03) benign(0.281) TCGA-FD-A6TC-01 X 154221360 154221360 C T F8 Missense_Mutation p.G151E 0.44 tolerated(1) benign(0.009) TCGA-FD-A6TC-01 X 16170438 16170438 C T GRPR Silent p.F275F 0.24 TCGA-FD-A6TC-01 X 18209134 18209134 G A BEND2 Silent p.L425L 0.38 TCGA-FD-A6TC-01 X 18343029 18343029 G A SCML2 Nonsense_Mutation p.Q54* 0.14 TCGA-FD-A6TC-01 X 18343043 18343043 G T SCML2 Nonsense_Mutation p.S49* 0.12 TCGA-FD-A6TC-01 X 18622976 18622976 C T CDKL5 Silent p.L644L 0.22 TCGA-FD-A6TC-01 X 18911740 18911740 C G PHKA2 Missense_Mutation p.D1191H 0.25 deleterious(0) possibly_damaging(0.599) TCGA-FD-A6TC-01 X 19002045 19002045 C G PHKA2 Silent p.R2R 0.43 TCGA-FD-A6TC-01 X 224512 224512 G A GTPBP6 Silent p.P158P 0.23 TCGA-FD-A6TC-01 X 2732431 2732431 G C XG 3'UTR 0.10 TCGA-FD-A6TC-01 X 27766831 27766831 G A DCAF8L2 Missense_Mutation p.E607K 0.38 deleterious(0.03) benign(0.311) TCGA-FD-A6TC-01 X 36089992 36089992 C T CHDC2 Nonsense_Mutation p.Q32* 0.16 TCGA-FD-A6TC-01 X 37587304 37587304 C T XK Silent p.I308I 0.33 TCGA-FD-A6TC-01 X 38128874 38128874 T C TM4SF2 Intron 0.55 TCGA-FD-A6TC-01 X 38546923 38546923 G C TSPAN7 3'UTR 0.31 TCGA-FD-A6TC-01 X 41437656 41437656 C A CASK Missense_Mutation p.M480I 0.23 tolerated(0.48) benign(0) TCGA-FD-A6TC-01 X 44913173 44913173 C T KDM6A Missense_Mutation p.S283F 0.26 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TC-01 X 47045541 47045541 G A RBM10 Silent p.R836R 0.12 TCGA-FD-A6TC-01 X 47478941 47478941 G C SYN1 Missense_Mutation p.P63A 0.33 tolerated(0.3) benign(0.002) TCGA-FD-A6TC-01 X 49050799 49050799 C T SYP Missense_Mutation p.D83N 0.24 tolerated(0.24) benign(0.057) TCGA-FD-A6TC-01 X 49837169 49837169 C T CLCN5 Missense_Mutation p.T114I 0.14 tolerated(0.44) probably_damaging(0.999) TCGA-FD-A6TC-01 X 50146091 50146091 G C DGKK RNA 0.19 TCGA-FD-A6TC-01 X 53230843 53230843 C G KDM5C Missense_Mutation p.K650N 0.22 tolerated(0.19) probably_damaging(0.933) TCGA-FD-A6TC-01 X 54037673 54037673 C G PHF8 Silent p.L312L 0.14 TCGA-FD-A6TC-01 X 54324643 54324643 C T WNK3 Missense_Mutation p.E455K 0.15 deleterious(0) probably_damaging(0.965) TCGA-FD-A6TC-01 X 54836548 54836548 C T MAGED2 Nonsense_Mutation p.Q147* 0.33 TCGA-FD-A6TC-01 X 55054266 55054266 T C ALAS2 Intron 0.44 TCGA-FD-A6TC-01 X 65390420 65390420 C A HEPH Nonsense_Mutation p.S57* 0.16 TCGA-FD-A6TC-01 X 69460279 69460279 C G AWAT1 3'UTR 0.76 TCGA-FD-A6TC-01 X 70471043 70471043 C G ZMYM3 Missense_Mutation p.D255H 0.66 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-FD-A6TC-01 X 71876047 71876047 C T PHKA1 Missense_Mutation p.E322K 0.23 deleterious(0) possibly_damaging(0.903) TCGA-FD-A6TC-01 X 76937123 76937123 C A ATRX Nonsense_Mutation p.E1209* 0.21 TCGA-FD-A6TD-01 10 104243978 104243978 C T ACTR1A Missense_Mutation p.R199H 0.37 tolerated(0.15) possibly_damaging(0.466) TCGA-FD-A6TD-01 10 114925398 114925398 G A TCF7L2 Silent p.S492S 0.09 TCGA-FD-A6TD-01 10 120445671 120445671 G A CACUL1 Missense_Mutation p.S360L 0.30 deleterious_low_confidence(0) benign(0.289) TCGA-FD-A6TD-01 10 46322050 46322050 C T AGAP4 Silent p.L435L 0.38 TCGA-FD-A6TD-01 10 51892705 51892705 G C FAM21A Nonstop_Mutation p.*1342Yext*53 0.11 TCGA-FD-A6TD-01 11 118509706 118509706 A T PHLDB1 Missense_Mutation p.Q878L 0.15 deleterious(0.03) probably_damaging(0.948) TCGA-FD-A6TD-01 11 134121050 134121050 G A THYN1 Missense_Mutation p.R66C 0.18 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TD-01 11 17098712 17098712 C T RPS13 Intron 0.15 TCGA-FD-A6TD-01 11 55135647 55135647 C A OR4A15 Missense_Mutation p.F96L 0.06 tolerated_low_confidence(0.49) benign(0.066) TCGA-FD-A6TD-01 11 55703172 55703172 C - OR5I1 Frame_Shift_Del p.R236Gfs*12 0.58 TCGA-FD-A6TD-01 11 57185238 57185238 G A SLC43A3 Silent p.P218P 0.19 TCGA-FD-A6TD-01 11 66062504 66062504 G T TMEM151A Missense_Mutation p.D263Y 0.40 deleterious(0) possibly_damaging(0.885) TCGA-FD-A6TD-01 11 69466022 69466022 C G CCND1 Missense_Mutation p.P287R 0.30 deleterious(0) probably_damaging(1) TCGA-FD-A6TD-01 11 88027636 88027636 G A CTSC Silent p.Y310Y 0.41 TCGA-FD-A6TD-01 11 94911963 94911963 C T SESN3 Missense_Mutation p.D323N 0.28 tolerated(0.37) benign(0.023) TCGA-FD-A6TD-01 12 108145902 108145902 G C PRDM4 Missense_Mutation p.S139C 0.12 deleterious_low_confidence(0.01) benign(0.425) TCGA-FD-A6TD-01 12 112684728 112684728 G C HECTD4 Missense_Mutation p.S1351C 0.12 benign(0.443) TCGA-FD-A6TD-01 12 112688036 112688036 G C HECTD4 Missense_Mutation p.L1142V 0.26 benign(0.344) TCGA-FD-A6TD-01 12 126138519 126138519 C T TMEM132B Missense_Mutation p.R834C 0.19 tolerated(0.17) possibly_damaging(0.526) TCGA-FD-A6TD-01 12 29598255 29598255 A T OVCH1 Missense_Mutation p.V946E 0.25 tolerated(0.12) possibly_damaging(0.764) TCGA-FD-A6TD-01 12 30783648 30783648 A G IPO8 3'UTR 0.38 TCGA-FD-A6TD-01 12 39725533 39725533 G C KIF21A Missense_Mutation p.R1038G 0.24 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TD-01 12 48372111 48372111 C T COL2A1 Missense_Mutation p.R989H 0.23 unknown(0) TCGA-FD-A6TD-01 12 53342927 53342927 G - KRT18 5'UTR 0.18 TCGA-FD-A6TD-01 12 9227263 9227263 G C A2M Missense_Mutation p.L1217V 0.44 deleterious(0.02) benign(0.12) TCGA-FD-A6TD-01 13 25479744 25479744 A G CENPJ Missense_Mutation p.V811A 0.31 tolerated(0.23) benign(0.005) TCGA-FD-A6TD-01 13 49039340 49039341 - CC RB1 Frame_Shift_Ins p.T778Lfs*33 0.27 TCGA-FD-A6TD-01 14 105419680 105419680 G C AHNAK2 Missense_Mutation p.P703R 0.26 benign(0.277) TCGA-FD-A6TD-01 14 24769636 24769639 GAAG - NOP9 Frame_Shift_Del p.E92* 0.32 TCGA-FD-A6TD-01 14 25100173 25100173 T C GZMB 3'UTR 0.15 TCGA-FD-A6TD-01 14 45636324 45636324 C T FANCM Missense_Mutation p.R654W 0.24 tolerated(0.12) benign(0.015) TCGA-FD-A6TD-01 14 52898940 52898940 G C TXNDC16 3'UTR 0.30 TCGA-FD-A6TD-01 14 52899139 52899139 G A TXNDC16 Silent p.V787V 0.21 TCGA-FD-A6TD-01 14 64556341 64556341 C T SYNE2 Missense_Mutation p.S3907L 0.33 benign(0.019) TCGA-FD-A6TD-01 14 93393012 93393012 C G CHGA Silent p.V52V 0.29 TCGA-FD-A6TD-01 14 94964331 94964331 C T SERPINA12 Missense_Mutation p.G135E 0.28 tolerated(0.07) benign(0.393) TCGA-FD-A6TD-01 15 40630951 40630951 C T C15orf52 Missense_Mutation p.E173K 0.41 tolerated(1) benign(0.009) TCGA-FD-A6TD-01 16 2127670 2127670 C G TSC2 Missense_Mutation p.S970C 0.59 tolerated(0.11) benign(0.002) TCGA-FD-A6TD-01 16 67214350 67214350 G A KIAA0895L Missense_Mutation p.P55L 0.48 tolerated_low_confidence(0.07) benign(0.05) TCGA-FD-A6TD-01 16 70732546 70732546 C G VAC14 Missense_Mutation p.K610N 0.32 tolerated(0.11) benign(0.16) TCGA-FD-A6TD-01 16 8990890 8990890 C T USP7 Missense_Mutation p.V929M 0.11 deleterious(0.04) benign(0.143) TCGA-FD-A6TD-01 17 18967395 18967395 C T SNORD3B-2 RNA 0.26 TCGA-FD-A6TD-01 17 40021286 40021286 G A KLHL11 Missense_Mutation p.S113L 0.23 tolerated(0.12) probably_damaging(0.931) TCGA-FD-A6TD-01 17 40913918 40913918 G A RAMP2 Splice_Site p.X55_splice 0.11 TCGA-FD-A6TD-01 17 5013040 5013040 C T ZNF232 Missense_Mutation p.M49I 0.27 tolerated(0.7) benign(0) TCGA-FD-A6TD-01 17 60650724 60650724 G A TLK2 Missense_Mutation p.E373K 0.17 tolerated(0.28) benign(0.003) TCGA-FD-A6TD-01 17 65163677 65163677 C T HELZ Missense_Mutation p.E556K 0.14 deleterious(0.02) possibly_damaging(0.728) TCGA-FD-A6TD-01 17 7578448 7578448 G A TP53 Missense_Mutation p.A161V 0.37 deleterious(0) probably_damaging(1) TCGA-FD-A6TD-01 17 7578449 7578449 C A TP53 Missense_Mutation p.A161S 0.37 deleterious(0) probably_damaging(1) TCGA-FD-A6TD-01 17 77043909 77043909 C T C1QTNF1 Silent p.F195F 0.08 TCGA-FD-A6TD-01 17 77807775 77807775 C T CBX4 Missense_Mutation p.E556K 0.22 deleterious(0) possibly_damaging(0.899) TCGA-FD-A6TD-01 17 79095147 79095147 C T AATK Silent p.T863T 0.26 TCGA-FD-A6TD-01 18 65180490 65180490 C T DSEL Silent p.Q462Q 0.18 TCGA-FD-A6TD-01 19 11217345 11217345 G T LDLR Nonsense_Mutation p.E267* 0.06 TCGA-FD-A6TD-01 19 16545358 16545358 G C EPS15L1 Intron 0.11 TCGA-FD-A6TD-01 19 17756808 17756808 G A UNC13A Silent p.L719L 0.20 TCGA-FD-A6TD-01 19 18976120 18976120 C - UPF1 Frame_Shift_Del p.Q961Rfs*8 0.38 TCGA-FD-A6TD-01 19 21606925 21606925 C G ZNF493 Silent p.P488P 0.17 TCGA-FD-A6TD-01 19 36110355 36110355 C T HAUS5 Silent p.L403L 0.21 TCGA-FD-A6TD-01 19 41430198 41430198 C T CYP2B7P RNA 0.18 TCGA-FD-A6TD-01 19 42799051 42799051 G A CIC Missense_Mutation p.R1512H 0.16 probably_damaging(0.964) TCGA-FD-A6TD-01 19 48537491 48537491 G A CABP5 Silent p.D159D 0.18 TCGA-FD-A6TD-01 19 53384992 53384992 C T ZNF320 Silent p.R129R 0.23 TCGA-FD-A6TD-01 19 55824344 55824344 G C TMEM150B Silent p.L195L 0.18 TCGA-FD-A6TD-01 19 58301711 58301711 C T ZNF586 Nonsense_Mutation p.Q36* 0.16 TCGA-FD-A6TD-01 19 59067557 59067557 C T UBE2M Missense_Mutation p.E151K 0.11 tolerated(0.12) benign(0.07) TCGA-FD-A6TD-01 19 6389547 6389547 C G GTF2F1 Missense_Mutation p.E78D 0.15 deleterious(0.02) possibly_damaging(0.476) TCGA-FD-A6TD-01 19 8808124 8808125 - C ACTL9 Frame_Shift_Ins p.L310Afs*120 0.21 TCGA-FD-A6TD-01 1 146399599 146399599 G T NBPF12 Nonsense_Mutation p.E180* 0.05 TCGA-FD-A6TD-01 1 148009423 148009423 C G NBPF14 Silent p.L634L 0.04 TCGA-FD-A6TD-01 1 151785468 151785468 C T RORC Missense_Mutation p.E414K 0.11 deleterious(0) possibly_damaging(0.898) TCGA-FD-A6TD-01 1 153005029 153005029 C T SPRR1B Missense_Mutation p.P70S 0.35 deleterious(0.05) probably_damaging(0.998) TCGA-FD-A6TD-01 1 15813857 15813857 G A CELA2B Silent p.S239S 0.13 TCGA-FD-A6TD-01 1 159779326 159779326 A G FCRL6 Missense_Mutation p.I247V 0.07 tolerated(0.05) benign(0.065) TCGA-FD-A6TD-01 1 161167853 161167853 C T ADAMTS4 Missense_Mutation p.G189S 0.35 tolerated(0.37) benign(0.001) TCGA-FD-A6TD-01 1 167806521 167806521 G T ADCY10 Missense_Mutation p.P1015T 0.29 tolerated(0.12) benign(0.045) TCGA-FD-A6TD-01 1 23418815 23418815 C T LUZP1 Missense_Mutation p.R647Q 0.13 deleterious_low_confidence(0.03) benign(0.017) TCGA-FD-A6TD-01 1 237813234 237813234 G A RYR2 Missense_Mutation p.V2524I 0.27 benign(0.352) TCGA-FD-A6TD-01 1 237886498 237886498 C T RYR2 Missense_Mutation p.S3542L 0.19 benign(0.017) TCGA-FD-A6TD-01 1 246810816 246810816 G A CNST Missense_Mutation p.G438D 0.32 tolerated(0.77) probably_damaging(0.959) TCGA-FD-A6TD-01 1 2489176 2489176 C T TNFRSF14 Silent p.L27L 0.30 TCGA-FD-A6TD-01 1 27216282 27216282 G T GPN2 Silent p.L102L 0.33 TCGA-FD-A6TD-01 1 28086046 28086046 T C FAM76A Silent p.L283L 0.29 TCGA-FD-A6TD-01 1 38184015 38184015 G A EPHA10 3'UTR 0.14 TCGA-FD-A6TD-01 1 42047925 42047925 G A HIVEP3 Silent p.V848V 0.12 TCGA-FD-A6TD-01 1 46871313 46871313 C G FAAH Missense_Mutation p.S211C 0.14 deleterious(0.01) benign(0.02) TCGA-FD-A6TD-01 1 46871358 46871358 G T FAAH Missense_Mutation p.G226V 0.12 deleterious(0) possibly_damaging(0.733) TCGA-FD-A6TD-01 1 63991283 63991283 C G EFCAB7 Missense_Mutation p.Q14E 0.35 tolerated(0.33) benign(0.006) TCGA-FD-A6TD-01 1 74818996 74818996 G C FPGT-TNNI3K Missense_Mutation p.D441H 0.53 deleterious(0.02) possibly_damaging(0.748) TCGA-FD-A6TD-01 20 18448047 18448047 C T POLR3F 5'UTR 0.53 TCGA-FD-A6TD-01 20 18448058 18448058 G C POLR3F 5'UTR 0.45 TCGA-FD-A6TD-01 20 23350750 23350750 G A GZF1 Nonsense_Mutation p.W603* 0.24 TCGA-FD-A6TD-01 20 3090725 3090725 G A UBOX5 3'UTR 0.20 TCGA-FD-A6TD-01 20 55209242 55209242 G A TFAP2C Silent p.E280E 0.46 TCGA-FD-A6TD-01 21 33064715 33064715 G A SCAF4 Nonsense_Mutation p.Q521* 0.43 TCGA-FD-A6TD-01 22 26688487 26688487 C A SEZ6L Silent p.P70P 0.41 TCGA-FD-A6TD-01 22 38219405 38219405 G A GALR3 5'UTR 0.25 TCGA-FD-A6TD-01 22 41832968 41832968 C A TOB2 Nonsense_Mutation p.E128* 0.34 TCGA-FD-A6TD-01 2 128350491 128350491 C A MYO7B Silent p.G705G 0.27 TCGA-FD-A6TD-01 2 162088006 162088006 G A TANK Missense_Mutation p.D349N 0.45 deleterious(0.03) benign(0.097) TCGA-FD-A6TD-01 2 162762398 162762398 G A SLC4A10 Splice_Site p.X666_splice 0.62 TCGA-FD-A6TD-01 2 166201365 166201365 G A SCN2A Missense_Mutation p.G955S 0.36 deleterious(0.05) probably_damaging(0.958) TCGA-FD-A6TD-01 2 166893008 166893008 G A SCN1A Silent p.S993S 0.37 TCGA-FD-A6TD-01 2 177202341 177202341 G C MTX2 Missense_Mutation p.R247S 0.30 tolerated(0.16) benign(0.026) TCGA-FD-A6TD-01 2 179410144 179410144 G C TTN Missense_Mutation p.S31898C 0.35 TCGA-FD-A6TD-01 2 198570809 198570809 G A MARS2 Missense_Mutation p.R227Q 0.46 tolerated(0.45) benign(0.009) TCGA-FD-A6TD-01 2 210560521 210560521 T C MAP2 Silent p.D1209D 0.35 TCGA-FD-A6TD-01 2 238285671 238285671 A G COL6A3 Silent p.D938D 0.31 TCGA-FD-A6TD-01 2 25042933 25042933 C A ADCY3 Silent p.V1101V 0.11 TCGA-FD-A6TD-01 2 27276809 27276809 G A AGBL5 Missense_Mutation p.E145K 0.15 tolerated(0.05) benign(0.254) TCGA-FD-A6TD-01 2 27276863 27276863 G A AGBL5 Missense_Mutation p.D163N 0.18 deleterious(0) possibly_damaging(0.546) TCGA-FD-A6TD-01 2 32822980 32822980 C T BIRC6 Missense_Mutation p.S4592F 0.28 probably_damaging(0.999) TCGA-FD-A6TD-01 2 32822983 32822983 C T BIRC6 Missense_Mutation p.S4593L 0.29 possibly_damaging(0.501) TCGA-FD-A6TD-01 2 32824875 32824875 C G BIRC6 Missense_Mutation p.Q4634E 0.31 probably_damaging(0.983) TCGA-FD-A6TD-01 2 58431328 58431328 G C FANCL Missense_Mutation p.I136M 0.12 deleterious(0.01) possibly_damaging(0.628) TCGA-FD-A6TD-01 2 62449836 62449836 A G B3GNT2 Missense_Mutation p.I161V 0.36 deleterious(0) probably_damaging(0.953) TCGA-FD-A6TD-01 3 1337325 1337325 C T CNTN6 Silent p.Y165Y 0.20 TCGA-FD-A6TD-01 3 139062918 139062918 C T MRPS22 Missense_Mutation p.S17F 0.12 tolerated_low_confidence(0.12) benign(0.006) TCGA-FD-A6TD-01 3 151164237 151164237 T C IGSF10 Missense_Mutation p.T1178A 0.29 tolerated(0.29) benign(0.003) TCGA-FD-A6TD-01 3 158289050 158289050 C G MLF1 5'UTR 0.33 TCGA-FD-A6TD-01 3 178917576 178917576 G A PIK3CA Missense_Mutation p.V151M 0.09 tolerated(0.25) benign(0.098) TCGA-FD-A6TD-01 3 184025473 184025473 C G PSMD2 Missense_Mutation p.L759V 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TD-01 3 185165632 185165632 G A MAP3K13 Missense_Mutation p.E303K 0.13 deleterious(0.01) benign(0.264) TCGA-FD-A6TD-01 3 185165641 185165641 G A MAP3K13 Missense_Mutation p.D306N 0.12 tolerated(0.06) possibly_damaging(0.845) TCGA-FD-A6TD-01 3 185165665 185165665 G C MAP3K13 Missense_Mutation p.A314P 0.12 deleterious(0) probably_damaging(0.962) TCGA-FD-A6TD-01 3 196388272 196388272 G A NRROS Silent p.L586L 0.17 TCGA-FD-A6TD-01 3 40528373 40528373 G A ZNF619 Silent p.L164L 0.36 TCGA-FD-A6TD-01 3 4842270 4842270 C G ITPR1 Missense_Mutation p.L2350V 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-FD-A6TD-01 3 49212280 49212280 G A KLHDC8B Missense_Mutation p.G216D 0.18 tolerated(0.09) benign(0.197) TCGA-FD-A6TD-01 3 52109916 52109916 C T POC1A Missense_Mutation p.R404K 0.22 tolerated(1) benign(0.004) TCGA-FD-A6TD-01 3 52109975 52109975 C G POC1A Missense_Mutation p.L384F 0.26 deleterious(0) possibly_damaging(0.862) TCGA-FD-A6TD-01 4 15538624 15538624 C G CC2D2A Missense_Mutation p.H563Q 0.11 tolerated(0.3) benign(0.005) TCGA-FD-A6TD-01 4 156276879 156276879 C A MAP9 Missense_Mutation p.A427S 0.18 deleterious(0.03) possibly_damaging(0.788) TCGA-FD-A6TD-01 4 1643173 1643173 G A FAM53A Silent p.V348V 0.31 TCGA-FD-A6TD-01 4 166385704 166385704 T A CPE Missense_Mutation p.L157Q 0.15 deleterious(0) possibly_damaging(0.602) TCGA-FD-A6TD-01 4 166929100 166929100 G A TLL1 Missense_Mutation p.E273K 0.28 deleterious(0.01) possibly_damaging(0.595) TCGA-FD-A6TD-01 4 46390809 46390809 G C GABRA2 Intron 0.19 TCGA-FD-A6TD-01 4 68928546 68928546 C A TMPRSS11F Intron 0.13 TCGA-FD-A6TD-01 4 74364927 74364927 T C AFM Silent p.C462C 0.24 TCGA-FD-A6TD-01 4 94032102 94032102 G A GRID2 Missense_Mutation p.E245K 0.32 tolerated(0.06) benign(0.034) TCGA-FD-A6TD-01 5 140174505 140174505 G A PCDHA2 5'Flank 0.55 TCGA-FD-A6TD-01 5 159834989 159834989 C T SLU7 Silent p.K302K 0.39 TCGA-FD-A6TD-01 5 159840540 159840540 C T SLU7 Missense_Mutation p.G165R 0.39 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TD-01 5 176639086 176639086 C T NSD1 Missense_Mutation p.S1229L 0.42 tolerated_low_confidence(0.52) benign(0.001) TCGA-FD-A6TD-01 5 19747183 19747183 T C CDH18 Missense_Mutation p.I131V 0.30 tolerated(1) benign(0.235) TCGA-FD-A6TD-01 5 21751958 21751958 G C CDH12 Missense_Mutation p.T758S 0.20 tolerated(0.84) benign(0.175) TCGA-FD-A6TD-01 5 26886094 26886094 G A CDH9 Silent p.F537F 0.28 TCGA-FD-A6TD-01 5 38489219 38489219 C T LIFR Missense_Mutation p.G766R 0.13 deleterious(0) probably_damaging(0.988) TCGA-FD-A6TD-01 5 74324707 74324707 G A GCNT4 Missense_Mutation p.H386Y 0.23 tolerated(0.08) possibly_damaging(0.708) TCGA-FD-A6TD-01 6 31631703 31631703 C A GPANK1 Nonsense_Mutation p.E185* 0.29 TCGA-FD-A6TD-01 6 32374847 32374847 G A BTNL2 Silent p.F18F 0.18 TCGA-FD-A6TD-01 6 32809404 32809404 G A PSMB8 Missense_Mutation p.R216W 0.22 deleterious(0.03) probably_damaging(0.975) TCGA-FD-A6TD-01 6 33380119 33380119 C A PHF1 Missense_Mutation p.P27T 0.18 tolerated_low_confidence(0.42) benign(0) TCGA-FD-A6TD-01 6 38890979 38890979 C T DNAH8 Intron 0.16 TCGA-FD-A6TD-01 6 50791193 50791193 C T TFAP2B Missense_Mutation p.S52L 0.31 deleterious(0.01) possibly_damaging(0.497) TCGA-FD-A6TD-01 7 100683173 100683173 G TA MUC17 Nonsense_Mutation p.E2826* 0.16 TCGA-FD-A6TD-01 7 100806715 100806715 G A VGF Silent p.V470V 0.38 TCGA-FD-A6TD-01 7 120372964 120372964 G A KCND2 Missense_Mutation p.D375N 0.17 deleterious(0) probably_damaging(0.93) TCGA-FD-A6TD-01 7 129962394 129962394 G A CPA4 Missense_Mutation p.E382K 0.18 deleterious(0.02) possibly_damaging(0.619) TCGA-FD-A6TD-01 7 137569616 137569616 G C CREB3L2 Intron 0.27 TCGA-FD-A6TD-01 7 142881177 142881177 C T TAS2R39 Silent p.I222I 0.24 TCGA-FD-A6TD-01 7 148484180 148484180 G A CUL1 Missense_Mutation p.D483N 0.17 deleterious(0.02) benign(0.292) TCGA-FD-A6TD-01 7 1538123 1538123 G C INTS1 Silent p.L450L 0.42 TCGA-FD-A6TD-01 7 75513057 75513057 G C RHBDD2 Missense_Mutation p.V210L 0.04 tolerated(0.15) benign(0.003) TCGA-FD-A6TD-01 7 99695255 99695255 G A MCM7 Nonsense_Mutation p.R367* 0.33 TCGA-FD-A6TD-01 8 101065078 101065078 G C RGS22 Silent p.L547L 0.27 TCGA-FD-A6TD-01 8 103664525 103664525 A G KLF10 Missense_Mutation p.M46T 0.26 deleterious(0.01) benign(0.19) TCGA-FD-A6TD-01 8 131812674 131812674 C G ADCY8 Missense_Mutation p.E1020Q 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A6TD-01 8 134266785 134266785 C T NDRG1 Silent p.G197G 0.39 TCGA-FD-A6TD-01 8 22065000 22065000 G A BMP1 Missense_Mutation p.R849Q 0.31 deleterious(0) possibly_damaging(0.853) TCGA-FD-A6TD-01 8 30705318 30705318 C G TEX15 Missense_Mutation p.E406Q 0.32 tolerated(0.08) benign(0.382) TCGA-FD-A6TD-01 8 57354330 57354330 C T PENK Missense_Mutation p.G102D 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TD-01 8 7305518 7305518 G A SPAG11B 3'Flank 0.19 TCGA-FD-A6TD-01 8 74600986 74600986 C T STAU2 Silent p.K59K 0.25 TCGA-FD-A6TD-01 8 94822085 94822085 G T TMEM67 Nonsense_Mutation p.E912* 0.20 TCGA-FD-A6TD-01 9 134312046 134312046 G A PRRC2B Silent p.P111P 0.24 TCGA-FD-A6TD-01 9 136215086 136215086 C T RPL7A 5'UTR 0.24 TCGA-FD-A6TD-01 9 140086538 140086538 C T TPRN 3'UTR 0.27 TCGA-FD-A6TD-01 9 140357880 140357880 G A PNPLA7 Silent p.I1110I 0.23 TCGA-FD-A6TD-01 9 35547125 35547125 G A RUSC2 Missense_Mutation p.D203N 0.45 tolerated(0.05) probably_damaging(0.995) TCGA-FD-A6TD-01 9 6793112 6793112 C A KDM4C Missense_Mutation p.H42N 0.23 deleterious(0) probably_damaging(0.983) TCGA-FD-A6TD-01 9 87285596 87285596 G A NTRK2 5'UTR 0.32 TCGA-FD-A6TD-01 9 90535441 90535441 C T SPATA31C1 RNA 0.27 TCGA-FD-A6TD-01 X 101912346 101912346 C T GPRASP1 Missense_Mutation p.P1169S 0.64 deleterious(0) probably_damaging(1) TCGA-FD-A6TD-01 X 119059251 119059251 C G NKAP Missense_Mutation p.E394Q 0.48 deleterious(0) unknown(0) TCGA-FD-A6TD-01 X 12837720 12837720 G T PRPS2 Missense_Mutation p.G212C 0.58 deleterious(0) probably_damaging(1) TCGA-FD-A6TD-01 X 77254135 77254135 C T ATP7A Silent p.C499C 0.47 TCGA-FD-A6TE-01 10 135103335 135103335 G A TUBGCP2 Silent p.L479L 0.83 TCGA-FD-A6TE-01 10 135195066 135195066 G T PAOX Missense_Mutation p.Q257H 0.88 tolerated(0.17) benign(0.022) TCGA-FD-A6TE-01 10 26414413 26414413 C T MYO3A Nonsense_Mutation p.R664* 0.30 TCGA-FD-A6TE-01 10 29599980 29599980 G A LYZL1 Missense_Mutation p.V193I 0.38 deleterious(0.03) benign(0.237) TCGA-FD-A6TE-01 10 64966700 64966700 C G JMJD1C Missense_Mutation p.E1577Q 0.82 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TE-01 10 76735715 76735715 G A KAT6B Silent p.L540L 0.17 TCGA-FD-A6TE-01 10 76973799 76973799 G A VDAC2 Missense_Mutation p.D56N 0.89 deleterious(0) benign(0.245) TCGA-FD-A6TE-01 10 96162370 96162370 G A TBC1D12 5'UTR 1.00 TCGA-FD-A6TE-01 11 100141883 100141883 G A CNTN5 Missense_Mutation p.V742M 0.10 deleterious(0.02) probably_damaging(1) TCGA-FD-A6TE-01 11 101359740 101359740 G A TRPC6 Silent p.F407F 0.65 TCGA-FD-A6TE-01 11 113857253 113857253 G A HTR3A Missense_Mutation p.R246Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TE-01 11 1973375 1973375 C T MRPL23 Silent p.L53L 0.35 TCGA-FD-A6TE-01 11 34113464 34113464 G A CAPRIN1 Missense_Mutation p.M522I 0.49 tolerated(0.2) benign(0.354) TCGA-FD-A6TE-01 11 55062937 55062937 T C TRIM51HP Intron 0.38 TCGA-FD-A6TE-01 11 55322292 55322292 C T OR4C15 Silent p.A170A 0.52 TCGA-FD-A6TE-01 11 55761236 55761236 A C OR5F1 Missense_Mutation p.I289S 0.43 deleterious(0) probably_damaging(0.912) TCGA-FD-A6TE-01 11 59344284 59344284 C A OSBP Nonsense_Mutation p.E759* 0.48 TCGA-FD-A6TE-01 11 63681949 63681949 C T RCOR2 Missense_Mutation p.R182Q 0.57 deleterious(0) possibly_damaging(0.838) TCGA-FD-A6TE-01 11 64416272 64416272 C T NRXN2 Missense_Mutation p.G1073R 0.39 deleterious(0) probably_damaging(1) TCGA-FD-A6TE-01 11 66330698 66330698 G A CTSF 3'Flank 0.38 TCGA-FD-A6TE-01 11 72465904 72465904 C T STARD10 3'UTR 0.50 TCGA-FD-A6TE-01 11 75672572 75672572 C G UVRAG Silent p.L226L 0.38 TCGA-FD-A6TE-01 11 86209145 86209145 C T ME3 Missense_Mutation p.E189K 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A6TE-01 11 8947430 8947430 G T C11orf16 Missense_Mutation p.P262T 0.42 tolerated(0.17) benign(0.037) TCGA-FD-A6TE-01 11 92534424 92534424 G A FAT3 Missense_Mutation p.E2749K 0.30 benign(0.094) TCGA-FD-A6TE-01 12 10583763 10583763 C T KLRC2 Missense_Mutation p.A217T 0.97 tolerated(0.16) benign(0.024) TCGA-FD-A6TE-01 12 108006637 108006637 G C BTBD11 Silent p.L630L 0.68 TCGA-FD-A6TE-01 12 109921372 109921372 C G UBE3B Missense_Mutation p.Q6E 0.40 tolerated(0.96) benign(0.012) TCGA-FD-A6TE-01 12 112171868 112171868 G C ACAD10 Silent p.L543L 0.35 TCGA-FD-A6TE-01 12 116421180 116421180 G A MED13L Missense_Mutation p.S1566L 0.29 tolerated(0.16) unknown(0) TCGA-FD-A6TE-01 12 118671555 118671555 C T TAOK3 Silent p.V189V 0.58 TCGA-FD-A6TE-01 12 121932456 121932456 C G KDM2B Missense_Mutation p.E554Q 0.41 tolerated(0.08) benign(0.222) TCGA-FD-A6TE-01 12 122354272 122354272 C G PSMD9 3'UTR 0.40 TCGA-FD-A6TE-01 12 123345274 123345274 C G HIP1R Silent p.L903L 0.61 TCGA-FD-A6TE-01 12 124497193 124497193 G C ZNF664 Missense_Mutation p.E168Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TE-01 12 132466883 132466883 C T EP400 Nonsense_Mutation p.Q597* 0.27 TCGA-FD-A6TE-01 12 2017164 2017164 C A CACNA2D4 Nonsense_Mutation p.E176* 0.68 TCGA-FD-A6TE-01 12 23887679 23887679 C G SOX5 Missense_Mutation p.R250T 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-FD-A6TE-01 12 26781039 26781039 C G ITPR2 Missense_Mutation p.K997N 0.54 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TE-01 12 49448705 49448705 G A KMT2D Nonsense_Mutation p.Q52* 0.55 TCGA-FD-A6TE-01 12 52709783 52709783 C G KRT83 Missense_Mutation p.D386H 0.42 deleterious(0) probably_damaging(0.989) TCGA-FD-A6TE-01 12 52775216 52775216 C T KRT84 Missense_Mutation p.E336K 0.54 deleterious(0.01) possibly_damaging(0.67) TCGA-FD-A6TE-01 12 53723111 53723111 G C SP7 Missense_Mutation p.L39V 0.59 tolerated(0.5) benign(0) TCGA-FD-A6TE-01 12 56744663 56744663 C T STAT2 Silent p.V348V 0.23 TCGA-FD-A6TE-01 12 57585154 57585154 G A LRP1 Missense_Mutation p.E2430K 0.57 benign(0.075) TCGA-FD-A6TE-01 12 57867948 57867948 C T ARHGAP9 Missense_Mutation p.D599N 0.28 tolerated(0.51) probably_damaging(0.956) TCGA-FD-A6TE-01 12 72163584 72163584 C G RAB21 Nonsense_Mutation p.S55* 0.25 TCGA-FD-A6TE-01 12 8086445 8086445 T C SLC2A3 Silent p.Q23Q 0.11 TCGA-FD-A6TE-01 12 88496695 88496695 C T CEP290 Missense_Mutation p.E971K 0.53 benign(0.423) TCGA-FD-A6TE-01 13 110823065 110823065 C T COL4A1 Missense_Mutation p.V1191M 0.62 probably_damaging(0.986) TCGA-FD-A6TE-01 13 114762072 114762072 C A RASA3 Silent p.L692L 0.52 TCGA-FD-A6TE-01 13 22246302 22246302 G A FGF9 Missense_Mutation p.G84E 0.37 deleterious(0) probably_damaging(0.985) TCGA-FD-A6TE-01 13 23905211 23905211 G A SACS Silent p.F4268F 0.50 TCGA-FD-A6TE-01 13 48953760 48953760 C T RB1 Nonsense_Mutation p.R455* 0.76 TCGA-FD-A6TE-01 13 50102700 50102700 G C PHF11 Missense_Mutation p.E299Q 0.94 tolerated(0.48) benign(0.061) TCGA-FD-A6TE-01 13 53049303 53049303 G A CKAP2 3'UTR 0.84 TCGA-FD-A6TE-01 13 70549846 70549846 C T KLHL1 Missense_Mutation p.E196K 0.40 tolerated(0.15) benign(0.141) TCGA-FD-A6TE-01 13 73301751 73301751 G A MZT1 5'UTR 0.46 TCGA-FD-A6TE-01 13 78163298 78163298 C G SCEL Missense_Mutation p.P189A 0.54 deleterious(0) possibly_damaging(0.805) TCGA-FD-A6TE-01 13 88327742 88327742 C T SLITRK5 Silent p.L33L 0.59 TCGA-FD-A6TE-01 13 99481705 99481705 C G DOCK9 Missense_Mutation p.Q1584H 0.44 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TE-01 14 102551290 102551290 C G HSP90AA1 Missense_Mutation p.E359Q 0.68 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A6TE-01 14 24885119 24885119 C T NYNRIN Silent p.L1388L 0.48 TCGA-FD-A6TE-01 14 42356711 42356711 G C LRFN5 Missense_Mutation p.E295Q 0.51 tolerated(0.13) possibly_damaging(0.471) TCGA-FD-A6TE-01 14 51224627 51224627 C A NIN Nonsense_Mutation p.E1041* 0.62 TCGA-FD-A6TE-01 14 53119019 53119019 G A ERO1L Missense_Mutation p.P355S 0.55 deleterious(0.04) probably_damaging(1) TCGA-FD-A6TE-01 14 69262806 69262806 C T ZFP36L1 5'Flank 0.35 TCGA-FD-A6TE-01 15 24923370 24923370 C T NPAP1 Missense_Mutation p.L786F 0.32 tolerated_low_confidence(0.25) possibly_damaging(0.765) TCGA-FD-A6TE-01 15 40933206 40933206 C G CASC5 Missense_Mutation p.R1953G 0.39 deleterious(0) benign(0.376) TCGA-FD-A6TE-01 15 40933217 40933217 G C CASC5 Missense_Mutation p.K1956N 0.38 deleterious(0.02) probably_damaging(0.982) TCGA-FD-A6TE-01 15 52338703 52338703 C T MAPK6 Silent p.L16L 0.30 TCGA-FD-A6TE-01 15 52404621 52404621 C T BCL2L10 Silent p.V101V 0.22 TCGA-FD-A6TE-01 15 52488553 52488553 C T MYO5C Missense_Mutation p.D1650N 0.57 deleterious(0) probably_damaging(1) TCGA-FD-A6TE-01 15 62170822 62170822 C T VPS13C Missense_Mutation p.D3376N 0.50 tolerated(0.13) probably_damaging(1) TCGA-FD-A6TE-01 15 91424679 91424679 G A FURIN Silent p.Q652Q 0.45 TCGA-FD-A6TE-01 15 91517446 91517446 C G PRC1 Missense_Mutation p.E461Q 0.61 deleterious(0.01) possibly_damaging(0.757) TCGA-FD-A6TE-01 15 96880630 96880630 C T NR2F2 Nonsense_Mutation p.Q342* 0.52 TCGA-FD-A6TE-01 16 31091412 31091412 G A ZNF646 Missense_Mutation p.R1256Q 0.78 deleterious(0.03) probably_damaging(0.983) TCGA-FD-A6TE-01 16 31282368 31282368 C G ITGAM Nonsense_Mutation p.S174* 0.75 TCGA-FD-A6TE-01 16 3339669 3339669 C G ZNF263 Missense_Mutation p.S388C 0.83 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TE-01 16 3452036 3452036 C G ZNF174 Missense_Mutation p.S11C 0.82 tolerated(0.05) possibly_damaging(0.533) TCGA-FD-A6TE-01 16 56700750 56700750 G A MT1G 3'UTR 0.80 TCGA-FD-A6TE-01 16 81076045 81076045 C G ATMIN Missense_Mutation p.H208D 0.94 deleterious(0) probably_damaging(0.969) TCGA-FD-A6TE-01 16 830500 830500 G A MSLNL Silent p.H167H 0.86 TCGA-FD-A6TE-01 17 18178247 18178247 C G TOP3A Missense_Mutation p.E959Q 0.40 tolerated(0.6) benign(0.028) TCGA-FD-A6TE-01 17 27251024 27251024 C T PHF12 Silent p.L206L 0.53 TCGA-FD-A6TE-01 17 27424304 27424304 G C MYO18A Silent p.L1389L 0.46 TCGA-FD-A6TE-01 17 32906018 32906018 G C C17orf102 Silent p.L94L 0.40 TCGA-FD-A6TE-01 17 33592878 33592878 C T SLFN5 Missense_Mutation p.H883Y 0.35 deleterious(0) benign(0.32) TCGA-FD-A6TE-01 17 38574100 38574100 C T TOP2A 5'UTR 0.47 TCGA-FD-A6TE-01 17 39412188 39412188 C A KRTAP9-9 3'UTR 0.50 TCGA-FD-A6TE-01 17 40665986 40665986 C T ATP6V0A1 Silent p.L747L 0.50 TCGA-FD-A6TE-01 17 40696350 40696350 G C NAGLU 3'UTR 0.50 TCGA-FD-A6TE-01 17 43320517 43320517 C G FMNL1 Missense_Mutation p.F681L 0.33 deleterious(0) probably_damaging(0.991) TCGA-FD-A6TE-01 17 4356419 4356419 C G SPNS3 Missense_Mutation p.I344M 0.88 deleterious(0) possibly_damaging(0.908) TCGA-FD-A6TE-01 17 46673592 46673592 C T HOXB6 3'UTR 0.33 TCGA-FD-A6TE-01 17 5463250 5463250 C G NLRP1 Missense_Mutation p.E256Q 0.95 tolerated_low_confidence(1) benign(0.001) TCGA-FD-A6TE-01 17 63052765 63052765 C G GNA13 5'UTR 0.33 TCGA-FD-A6TE-01 17 663285 663285 C G GLOD4 3'UTR 0.77 TCGA-FD-A6TE-01 17 73482422 73482422 C G KIAA0195 Silent p.L108L 0.34 TCGA-FD-A6TE-01 17 73916101 73916101 C T FBF1 Missense_Mutation p.E625K 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-FD-A6TE-01 17 73916369 73916369 C G FBF1 Missense_Mutation p.E591Q 0.38 tolerated(0.16) probably_damaging(0.964) TCGA-FD-A6TE-01 17 75205486 75205486 G C SEC14L1 Missense_Mutation p.E513D 0.58 tolerated(0.09) benign(0.057) TCGA-FD-A6TE-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.93 TCGA-FD-A6TE-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.97 deleterious(0) probably_damaging(1) TCGA-FD-A6TE-01 17 78328116 78328116 C G RNF213 Intron 0.42 TCGA-FD-A6TE-01 18 23873440 23873440 C T TAF4B Nonsense_Mutation p.Q593* 0.56 TCGA-FD-A6TE-01 18 47811099 47811099 C A CXXC1 Silent p.V341V 0.32 TCGA-FD-A6TE-01 18 47811443 47811443 C G CXXC1 Missense_Mutation p.D281H 0.52 tolerated(0.07) probably_damaging(0.997) TCGA-FD-A6TE-01 18 47812480 47812480 G A CXXC1 Missense_Mutation p.S124L 0.36 deleterious_low_confidence(0.02) benign(0.034) TCGA-FD-A6TE-01 18 61471647 61471647 C G SERPINB7 Silent p.L307L 0.56 TCGA-FD-A6TE-01 18 61647113 61647113 C G SERPINB8 Missense_Mutation p.Q83E 0.49 tolerated(0.32) benign(0.049) TCGA-FD-A6TE-01 19 3179294 3179294 C T S1PR4 Silent p.L168L 0.86 TCGA-FD-A6TE-01 19 33355210 33355210 G A SLC7A9 Silent p.I90I 0.24 TCGA-FD-A6TE-01 19 33703343 33703343 C G SLC7A10 Missense_Mutation p.E215Q 0.16 tolerated(0.19) benign(0.12) TCGA-FD-A6TE-01 19 35614378 35614378 G A FXYD3 3'UTR 0.35 TCGA-FD-A6TE-01 19 35614389 35614389 G C FXYD3 3'UTR 0.33 TCGA-FD-A6TE-01 19 37441869 37441869 T C ZNF568 Missense_Mutation p.M605T 0.25 deleterious(0.04) possibly_damaging(0.817) TCGA-FD-A6TE-01 19 40368625 40368625 G A FCGBP Silent p.I4241I 0.19 TCGA-FD-A6TE-01 19 41019439 41019439 G A SPTBN4 Missense_Mutation p.D915N 0.73 deleterious(0.03) probably_damaging(0.958) TCGA-FD-A6TE-01 19 41600899 41600899 G A CYP2A13 Silent p.L399L 0.54 TCGA-FD-A6TE-01 19 49230267 49230267 C G RASIP1 Missense_Mutation p.E674Q 0.68 tolerated(0.1) benign(0.113) TCGA-FD-A6TE-01 19 49621933 49621933 C G C19orf73 Missense_Mutation p.R116T 0.59 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TE-01 19 50333088 50333088 C G MED25 Missense_Mutation p.L191V 0.44 deleterious(0) probably_damaging(0.982) TCGA-FD-A6TE-01 19 50475342 50475342 C T VRK3 3'Flank 0.22 TCGA-FD-A6TE-01 19 54745909 54745909 C T LILRA6 Silent p.V116V 0.13 TCGA-FD-A6TE-01 19 56223163 56223163 C T NLRP9 Intron 0.50 TCGA-FD-A6TE-01 19 58198004 58198004 G A ZNF551 Missense_Mutation p.E121K 0.27 tolerated(0.06) probably_damaging(0.978) TCGA-FD-A6TE-01 19 58198719 58198719 G A ZNF551 Missense_Mutation p.G359E 0.18 deleterious(0) possibly_damaging(0.813) TCGA-FD-A6TE-01 19 58723825 58723825 G A ZNF274 Silent p.E425E 0.50 TCGA-FD-A6TE-01 1 101196923 101196923 G A VCAM1 Missense_Mutation p.M458I 0.30 tolerated(0.23) benign(0.002) TCGA-FD-A6TE-01 1 101200190 101200190 G C VCAM1 Missense_Mutation p.G642A 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A6TE-01 1 101200264 101200264 G A VCAM1 Missense_Mutation p.E667K 0.21 deleterious(0.03) possibly_damaging(0.902) TCGA-FD-A6TE-01 1 101203682 101203682 G C VCAM1 Missense_Mutation p.R688T 0.19 deleterious(0.02) benign(0.185) TCGA-FD-A6TE-01 1 111784890 111784890 C G CHI3L2 Missense_Mutation p.I359M 0.32 deleterious(0) probably_damaging(0.985) TCGA-FD-A6TE-01 1 111999351 111999351 C T ATP5F1 Missense_Mutation p.R163C 0.51 deleterious(0.04) benign(0.095) TCGA-FD-A6TE-01 1 145509174 145509174 G A RBM8A Missense_Mutation p.R163Q 0.69 tolerated(0.12) unknown(0) TCGA-FD-A6TE-01 1 145539074 145539074 C A ITGA10 Missense_Mutation p.S1005Y 0.16 deleterious(0.01) probably_damaging(0.974) TCGA-FD-A6TE-01 1 151209106 151209106 G C PIP5K1A Missense_Mutation p.E338Q 0.16 deleterious(0.04) possibly_damaging(0.688) TCGA-FD-A6TE-01 1 151265459 151265459 C G PI4KB Missense_Mutation p.E786Q 0.80 tolerated(0.06) benign(0.267) TCGA-FD-A6TE-01 1 152187647 152187647 G C HRNR Nonsense_Mutation p.S2153* 0.07 TCGA-FD-A6TE-01 1 152188442 152188442 C T HRNR Missense_Mutation p.G1888E 0.10 unknown(0) TCGA-FD-A6TE-01 1 154542288 154542288 G A CHRNB2 Missense_Mutation p.M77I 0.67 deleterious(0.01) probably_damaging(0.909) TCGA-FD-A6TE-01 1 154942858 154942858 G A SHC1 Silent p.L49L 0.18 TCGA-FD-A6TE-01 1 155233800 155233800 C G CLK2 Missense_Mutation p.D419H 0.17 deleterious(0) probably_damaging(1) TCGA-FD-A6TE-01 1 159888643 159888643 C T TAGLN2 Missense_Mutation p.G183R 0.80 tolerated(0.08) possibly_damaging(0.625) TCGA-FD-A6TE-01 1 16767305 16767305 C T NECAP2 Missense_Mutation p.H17Y 0.19 tolerated(0.57) benign(0.061) TCGA-FD-A6TE-01 1 172411753 172411753 G C PIGC Missense_Mutation p.Q4E 0.59 tolerated_low_confidence(0.18) benign(0.003) TCGA-FD-A6TE-01 1 179966254 179966254 C G CEP350 Nonsense_Mutation p.S321* 0.35 TCGA-FD-A6TE-01 1 183536393 183536393 G T NCF2 Silent p.V267V 0.26 TCGA-FD-A6TE-01 1 192992088 192992088 C T UCHL5 Missense_Mutation p.E272K 0.48 tolerated(0.18) benign(0.009) TCGA-FD-A6TE-01 1 19411123 19411123 G C UBR4 Missense_Mutation p.I4961M 0.60 benign(0.092) TCGA-FD-A6TE-01 1 203148518 203148518 G C CHI3L1 3'UTR 0.58 TCGA-FD-A6TE-01 1 204197245 204197245 C T PLEKHA6 Silent p.A999A 0.52 TCGA-FD-A6TE-01 1 206225233 206225233 C T AVPR1B Missense_Mutation p.R265W 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-FD-A6TE-01 1 22307603 22307603 C T CELA3B Silent p.I100I 0.28 TCGA-FD-A6TE-01 1 33237224 33237224 C T KIAA1522 Missense_Mutation p.P815L 0.20 tolerated(0.77) benign(0.007) TCGA-FD-A6TE-01 1 34052107 34052107 C T CSMD2 Missense_Mutation p.E2352K 0.28 deleterious(0.01) benign(0.24) TCGA-FD-A6TE-01 1 40431188 40431188 G A MFSD2A Missense_Mutation p.E188K 0.59 tolerated(0.44) benign(0.109) TCGA-FD-A6TE-01 1 52530608 52530608 G C BTF3L4 Missense_Mutation p.E56Q 0.53 deleterious(0.01) possibly_damaging(0.901) TCGA-FD-A6TE-01 1 52811971 52811971 G A ZFYVE9 3'UTR 0.41 TCGA-FD-A6TE-01 1 54348928 54348928 G A YIPF1 Missense_Mutation p.S18F 0.19 deleterious(0.03) benign(0.001) TCGA-FD-A6TE-01 1 54610372 54610372 C T CDCP2 Missense_Mutation p.G65E 0.69 deleterious(0) probably_damaging(1) TCGA-FD-A6TE-01 1 6529426 6529426 C G PLEKHG5 Missense_Mutation p.R752P 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A6TE-01 1 67356879 67356879 C T WDR78 Missense_Mutation p.E201K 0.20 tolerated(0.27) benign(0.334) TCGA-FD-A6TE-01 1 894355 894355 C G NOC2L Missense_Mutation p.E45Q 0.32 tolerated(0.53) benign(0.118) TCGA-FD-A6TE-01 1 89522815 89522815 G C GBP1 Missense_Mutation p.L293V 0.28 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TE-01 1 899321 899321 G A KLHL17 Silent p.L459L 0.64 TCGA-FD-A6TE-01 1 94639258 94639258 C G ARHGAP29 3'UTR 0.44 TCGA-FD-A6TE-01 1 94982739 94982739 G C ABCD3 3'UTR 0.33 TCGA-FD-A6TE-01 20 10653478 10653478 G A JAG1 Silent p.V86V 0.33 TCGA-FD-A6TE-01 20 18139778 18139778 G C CSRP2BP Missense_Mutation p.G184A 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TE-01 20 306653 306653 G T SOX12 Nonsense_Mutation p.E29* 0.40 TCGA-FD-A6TE-01 20 35128618 35128618 C T DLGAP4 Missense_Mutation p.H703Y 0.49 tolerated(0.74) benign(0.139) TCGA-FD-A6TE-01 20 35261991 35261991 C G SLA2 Missense_Mutation p.R78T 0.58 tolerated(0.07) benign(0.026) TCGA-FD-A6TE-01 20 35724307 35724307 C T RBL1 Missense_Mutation p.E9K 0.25 deleterious_low_confidence(0.03) benign(0.045) TCGA-FD-A6TE-01 20 52645461 52645461 C G BCAS1 Missense_Mutation p.E65Q 0.89 deleterious(0.01) benign(0.196) TCGA-FD-A6TE-01 20 57470707 57470707 G A GNAS Missense_Mutation p.M703I 0.93 deleterious(0) possibly_damaging(0.904) TCGA-FD-A6TE-01 21 31798017 31798017 C T KRTAP13-3 Missense_Mutation p.E72K 0.29 deleterious(0.01) benign(0.012) TCGA-FD-A6TE-01 21 34954538 34954538 G C DONSON Missense_Mutation p.L327V 0.54 deleterious(0) probably_damaging(0.925) TCGA-FD-A6TE-01 21 47674319 47674319 C G MCM3AP Missense_Mutation p.E1375Q 0.46 tolerated(0.25) benign(0.038) TCGA-FD-A6TE-01 22 18111393 18111393 G A ATP6V1E1 Silent p.L3L 0.38 TCGA-FD-A6TE-01 22 18385442 18385442 C T MICAL3 Missense_Mutation p.E182K 0.25 probably_damaging(0.995) TCGA-FD-A6TE-01 22 19122640 19122640 C T DGCR14 Missense_Mutation p.E362K 0.35 tolerated(0.97) possibly_damaging(0.773) TCGA-FD-A6TE-01 22 19196567 19196567 T A CLTCL1 Missense_Mutation p.N1103Y 0.38 deleterious(0) probably_damaging(0.942) TCGA-FD-A6TE-01 22 20102387 20102387 C T TRMT2A Missense_Mutation p.E340K 0.40 deleterious(0.03) benign(0.037) TCGA-FD-A6TE-01 22 22869830 22869830 C G ZNF280A Missense_Mutation p.R42T 0.50 deleterious(0) benign(0.016) TCGA-FD-A6TE-01 22 38120210 38120210 C T TRIOBP Silent p.P549P 0.73 TCGA-FD-A6TE-01 22 38121578 38121578 C G TRIOBP Silent p.T1005T 0.85 TCGA-FD-A6TE-01 22 39414425 39414425 C G APOBEC3C 3'UTR 0.91 TCGA-FD-A6TE-01 22 41521961 41521961 C T EP300 Nonsense_Mutation p.Q275* 0.82 TCGA-FD-A6TE-01 2 179730512 179730512 C G CCDC141 Missense_Mutation p.M902I 0.86 tolerated(0.14) benign(0.002) TCGA-FD-A6TE-01 2 191905832 191905832 C G STAT4 Missense_Mutation p.E432Q 0.88 deleterious(0.04) probably_damaging(0.942) TCGA-FD-A6TE-01 2 220097343 220097343 C G ANKZF1 Missense_Mutation p.L166V 0.84 tolerated(0.16) benign(0.056) TCGA-FD-A6TE-01 2 29606678 29606678 C T ALK Missense_Mutation p.R401Q 0.39 tolerated(0.48) probably_damaging(0.998) TCGA-FD-A6TE-01 2 54159802 54159802 C T PSME4 Intron 0.36 TCGA-FD-A6TE-01 2 61726883 61726883 C G XPO1 Missense_Mutation p.Q185H 0.49 deleterious(0) possibly_damaging(0.904) TCGA-FD-A6TE-01 2 7027268 7027268 C G RSAD2 Missense_Mutation p.I237M 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TE-01 2 95481376 95481376 C T ANKRD20A8P RNA 0.39 TCGA-FD-A6TE-01 2 97285101 97285101 C T KANSL3 Missense_Mutation p.G220R 0.39 tolerated(0.11) benign(0.201) TCGA-FD-A6TE-01 3 10145993 10145993 G A FANCD2OS Silent p.L156L 0.45 TCGA-FD-A6TE-01 3 119211213 119211213 C A POGLUT1 Missense_Mutation p.F369L 0.44 tolerated(1) benign(0.001) TCGA-FD-A6TE-01 3 119211250 119211250 C G POGLUT1 Missense_Mutation p.Q382E 0.44 tolerated(1) benign(0.004) TCGA-FD-A6TE-01 3 119211328 119211328 C T POGLUT1 3'UTR 0.24 TCGA-FD-A6TE-01 3 12616308 12616308 C T MKRN2 Silent p.F220F 0.43 TCGA-FD-A6TE-01 3 126291189 126291189 C A TXNRD3NB Missense_Mutation p.K66N 0.32 possibly_damaging(0.607) TCGA-FD-A6TE-01 3 130285937 130285937 C A COL6A6 Missense_Mutation p.N558K 0.40 tolerated(0.64) benign(0.004) TCGA-FD-A6TE-01 3 130887719 130887719 G T NEK11 Nonsense_Mutation p.E408* 0.34 TCGA-FD-A6TE-01 3 130887755 130887755 G T NEK11 Nonsense_Mutation p.E420* 0.30 TCGA-FD-A6TE-01 3 132172488 132172488 G T DNAJC13 Nonsense_Mutation p.E264* 0.46 TCGA-FD-A6TE-01 3 142542441 142542441 C A PCOLCE2 Silent p.V294V 0.37 TCGA-FD-A6TE-01 3 15643040 15643040 G A HACL1 5'UTR 0.36 TCGA-FD-A6TE-01 3 156711062 156711062 G A RP11-6F2.3 5'Flank 0.29 TCGA-FD-A6TE-01 3 183859808 183859808 G C EIF2B5 Missense_Mutation p.E418Q 0.31 tolerated(0.38) benign(0.007) TCGA-FD-A6TE-01 3 39307647 39307647 G A CX3CR1 Silent p.F150F 0.46 TCGA-FD-A6TE-01 3 49051149 49051149 G A WDR6 Missense_Mutation p.D758N 0.40 tolerated(0.2) benign(0.218) TCGA-FD-A6TE-01 3 49698132 49698132 G T BSN Nonsense_Mutation p.E2952* 0.34 TCGA-FD-A6TE-01 3 51733523 51733523 G A TEX264 Silent p.E194E 0.44 TCGA-FD-A6TE-01 3 52324464 52324464 G C GLYCTK Missense_Mutation p.E36Q 0.50 tolerated(0.12) benign(0.102) TCGA-FD-A6TE-01 3 58149068 58149068 C G FLNB Intron 0.47 TCGA-FD-A6TE-01 3 71733731 71733731 G C EIF4E3 3'UTR 0.57 TCGA-FD-A6TE-01 4 108603247 108603247 G - PAPSS1 Frame_Shift_Del p.P198Lfs*5 0.31 TCGA-FD-A6TE-01 4 110925665 110925665 C T EGF Nonsense_Mutation p.Q1060* 0.44 TCGA-FD-A6TE-01 4 142151333 142151333 C G ZNF330 Missense_Mutation p.F144L 0.20 tolerated(0.07) possibly_damaging(0.609) TCGA-FD-A6TE-01 4 174090010 174090010 C G GALNT7 Missense_Mutation p.I8M 0.20 deleterious_low_confidence(0.01) benign(0.216) TCGA-FD-A6TE-01 4 38097664 38097664 C T TBC1D1 Missense_Mutation p.S784L 0.40 deleterious(0.01) benign(0.043) TCGA-FD-A6TE-01 4 38800200 38800200 C G TLR1 Missense_Mutation p.D85H 0.45 deleterious(0) probably_damaging(0.968) TCGA-FD-A6TE-01 4 5624326 5624326 G A EVC2 Silent p.D813D 0.18 TCGA-FD-A6TE-01 4 6588737 6588737 C T MAN2B2 Missense_Mutation p.L136F 0.55 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TE-01 4 71024438 71024438 G C C4orf40 Missense_Mutation p.E157Q 0.41 tolerated(0.28) unknown(0) TCGA-FD-A6TE-01 5 135416238 135416238 G C VTRNA2-1 RNA 0.44 TCGA-FD-A6TE-01 5 13751269 13751269 C T DNAH5 Missense_Mutation p.R3710H 0.40 possibly_damaging(0.812) TCGA-FD-A6TE-01 5 137514282 137514282 C T BRD8 Intron 0.50 TCGA-FD-A6TE-01 5 137763680 137763680 G A KDM3B Missense_Mutation p.R1553K 0.42 tolerated(1) benign(0.004) TCGA-FD-A6TE-01 5 139908088 139908088 C A ANKHD1 Missense_Mutation p.H1853N 0.32 probably_damaging(0.977) TCGA-FD-A6TE-01 5 140502999 140502999 C G PCDHB4 Missense_Mutation p.S473R 0.40 tolerated_low_confidence(0.12) benign(0.397) TCGA-FD-A6TE-01 5 140530688 140530688 G C PCDHB6 Missense_Mutation p.D284H 0.49 deleterious(0) benign(0.218) TCGA-FD-A6TE-01 5 140559508 140559508 G A PCDHB8 Silent p.L631L 0.41 TCGA-FD-A6TE-01 5 140563415 140563415 G A PCDHB16 Silent p.G427G 0.44 TCGA-FD-A6TE-01 5 140698974 140698974 G C TAF7 Nonsense_Mutation p.S213* 0.51 TCGA-FD-A6TE-01 5 141359694 141359694 G C RNF14 Missense_Mutation p.E281Q 0.46 tolerated(0.45) benign(0.046) TCGA-FD-A6TE-01 5 146435248 146435248 G T PPP2R2B Missense_Mutation p.S20Y 0.44 deleterious_low_confidence(0.01) benign(0.005) TCGA-FD-A6TE-01 5 148386534 148386534 G A SH3TC2 Silent p.L1195L 0.39 TCGA-FD-A6TE-01 5 158705341 158705341 G C UBLCP1 Missense_Mutation p.M260I 0.46 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TE-01 5 161318038 161318038 C A GABRA1 Missense_Mutation p.P280T 0.42 deleterious(0) possibly_damaging(0.66) TCGA-FD-A6TE-01 5 176005567 176005567 C T CDHR2 Silent p.I592I 0.28 TCGA-FD-A6TE-01 5 176012980 176012980 C T CDHR2 Silent p.D920D 0.36 TCGA-FD-A6TE-01 5 180661176 180661176 G T TRIM41 Missense_Mutation p.D432Y 0.67 deleterious(0) probably_damaging(0.985) TCGA-FD-A6TE-01 5 31267476 31267476 G C CDH6 5'UTR 0.27 TCGA-FD-A6TE-01 5 43644722 43644722 C G NNT Missense_Mutation p.H370D 0.44 deleterious(0.02) probably_damaging(0.949) TCGA-FD-A6TE-01 5 52216207 52216207 G A ITGA1 Missense_Mutation p.R734Q 0.52 deleterious(0) probably_damaging(0.978) TCGA-FD-A6TE-01 5 67576355 67576355 G A PIK3R1 Splice_Site p.X212_splice 0.31 TCGA-FD-A6TE-01 5 89968409 89968409 G A GPR98 Missense_Mutation p.R1600K 0.39 probably_damaging(0.92) TCGA-FD-A6TE-01 6 107365497 107365497 C G C6orf203 Silent p.L173L 0.77 TCGA-FD-A6TE-01 6 116600375 116600375 C T TSPYL1 Missense_Mutation p.E207K 0.94 tolerated(0.21) possibly_damaging(0.636) TCGA-FD-A6TE-01 6 116600526 116600526 C G TSPYL1 Missense_Mutation p.K156N 0.77 tolerated(0.11) benign(0.003) TCGA-FD-A6TE-01 6 149901764 149901764 C G GINM1 Missense_Mutation p.L208V 0.80 tolerated(0.08) possibly_damaging(0.7) TCGA-FD-A6TE-01 6 31084866 31084866 G C CDSN Missense_Mutation p.L176V 1.00 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A6TE-01 6 33261808 33261808 C T RGL2 Intron 0.94 TCGA-FD-A6TE-01 6 33264224 33264224 G C RGL2 Missense_Mutation p.S146C 0.91 tolerated(0.12) benign(0.015) TCGA-FD-A6TE-01 6 38835879 38835879 G A DNAH8 Silent p.L2028L 0.19 TCGA-FD-A6TE-01 6 39828734 39828734 G A DAAM2 Missense_Mutation p.E67K 0.26 tolerated(0.08) probably_damaging(0.994) TCGA-FD-A6TE-01 6 41888831 41888831 C A MED20 5'UTR 0.53 TCGA-FD-A6TE-01 7 100684456 100684456 G A MUC17 Silent p.L3253L 0.46 TCGA-FD-A6TE-01 7 102574390 102574390 C G LRRC17 Silent p.L10L 0.38 TCGA-FD-A6TE-01 7 124493045 124493045 C T POT1 Missense_Mutation p.D284N 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-FD-A6TE-01 7 127013513 127013513 G A ZNF800 Missense_Mutation p.A626V 0.56 deleterious(0) probably_damaging(0.987) TCGA-FD-A6TE-01 7 129098206 129098206 C G STRIP2 Missense_Mutation p.L397V 0.40 tolerated(1) benign(0.002) TCGA-FD-A6TE-01 7 134346669 134346671 ACA - BPGM In_Frame_Del p.N138del 0.40 TCGA-FD-A6TE-01 7 140223167 140223167 G C DENND2A Missense_Mutation p.L869V 0.53 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TE-01 7 149491884 149491884 G C SSPO Intron 0.24 TCGA-FD-A6TE-01 7 150835370 150835370 A G AGAP3 Missense_Mutation p.T546A 0.36 tolerated(0.46) benign(0.002) TCGA-FD-A6TE-01 7 44807139 44807139 G A ZMIZ2 Missense_Mutation p.D894N 0.67 deleterious(0.02) possibly_damaging(0.465) TCGA-FD-A6TE-01 7 65444737 65444737 G A GUSB Silent p.I186I 0.65 TCGA-FD-A6TE-01 7 89976026 89976026 C T GTPBP10 5'UTR 0.12 TCGA-FD-A6TE-01 7 90894640 90894640 G C FZD1 Missense_Mutation p.E149Q 0.34 tolerated(0.14) possibly_damaging(0.64) TCGA-FD-A6TE-01 7 91752451 91752451 G A CYP51A1 Missense_Mutation p.P357S 0.36 tolerated(0.21) benign(0.014) TCGA-FD-A6TE-01 7 95045526 95045526 G A PON2 Intron 0.27 TCGA-FD-A6TE-01 7 97949589 97949589 G T BAIAP2L1 Nonsense_Mutation p.S79* 0.61 TCGA-FD-A6TE-01 7 98507927 98507927 G A TRRAP Silent p.K533K 0.41 TCGA-FD-A6TE-01 7 99217242 99217242 C T ZSCAN25 Missense_Mutation p.H5Y 0.52 deleterious_low_confidence(0.05) benign(0.018) TCGA-FD-A6TE-01 7 99227079 99227079 C T ZSCAN25 Silent p.F357F 0.37 TCGA-FD-A6TE-01 7 99699241 99699241 C G AP4M1 5'UTR 0.36 TCGA-FD-A6TE-01 8 121216072 121216072 C T COL14A1 Silent p.L334L 0.63 TCGA-FD-A6TE-01 8 124701174 124701174 C G ANXA13 Missense_Mutation p.D260H 0.24 deleterious(0) possibly_damaging(0.569) TCGA-FD-A6TE-01 8 124714888 124714888 G A ANXA13 Silent p.Y101Y 0.32 TCGA-FD-A6TE-01 8 33342716 33342716 G T MAK16 5'UTR 0.98 TCGA-FD-A6TE-01 8 39613263 39613263 G A ADAM2 Missense_Mutation p.S594F 0.73 tolerated(0.44) benign(0.01) TCGA-FD-A6TE-01 8 52321569 52321569 C T PXDNL Missense_Mutation p.G872D 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-FD-A6TE-01 8 67577453 67577453 C G VCPIP1 Missense_Mutation p.D581H 0.55 deleterious(0) possibly_damaging(0.866) TCGA-FD-A6TE-01 8 86089814 86089814 G A E2F5 Silent p.K53K 0.75 TCGA-FD-A6TE-01 8 92052944 92052944 G C TMEM55A Missense_Mutation p.L12V 0.47 deleterious(0.03) benign(0.152) TCGA-FD-A6TE-01 8 97316381 97316381 G C PTDSS1 Missense_Mutation p.G289A 0.56 tolerated(1) possibly_damaging(0.831) TCGA-FD-A6TE-01 9 100245328 100245328 G A TDRD7 Silent p.S870S 0.41 TCGA-FD-A6TE-01 9 116854252 116854252 C G KIF12 Missense_Mutation p.Q477H 0.50 deleterious_low_confidence(0.02) benign(0.429) TCGA-FD-A6TE-01 9 117119165 117119165 C G AKNA Missense_Mutation p.E942Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TE-01 9 119033631 119033631 G C PAPPA Missense_Mutation p.M963I 0.39 tolerated(0.08) benign(0.019) TCGA-FD-A6TE-01 9 120053704 120053704 C T ASTN2 Missense_Mutation p.M177I 0.38 tolerated_low_confidence(0.35) benign(0.043) TCGA-FD-A6TE-01 9 123911080 123911080 C G CNTRL Nonsense_Mutation p.S1197* 0.46 TCGA-FD-A6TE-01 9 125273430 125273430 C G OR1J2 Nonsense_Mutation p.S117* 0.31 TCGA-FD-A6TE-01 9 125512283 125512283 G A OR1L6 Missense_Mutation p.D53N 0.40 tolerated(0.07) benign(0.059) TCGA-FD-A6TE-01 9 125941507 125941507 C T STRBP Splice_Site p.X2_splice 0.38 TCGA-FD-A6TE-01 9 131670664 131670664 C T LRRC8A Silent p.L407L 0.43 TCGA-FD-A6TE-01 9 131671269 131671269 C T LRRC8A Missense_Mutation p.S609F 0.43 deleterious(0) probably_damaging(0.959) TCGA-FD-A6TE-01 9 131671306 131671306 C T LRRC8A Silent p.L621L 0.34 TCGA-FD-A6TE-01 9 131671342 131671342 C A LRRC8A Silent p.I633I 0.39 TCGA-FD-A6TE-01 9 133951317 133951317 G C LAMC3 Missense_Mutation p.R1198S 0.43 tolerated(0.26) benign(0.006) TCGA-FD-A6TE-01 9 135944563 135944563 G C CEL Missense_Mutation p.K404N 0.29 deleterious(0.03) probably_damaging(1) TCGA-FD-A6TE-01 9 139325493 139325493 C T INPP5E Silent p.T542T 0.44 TCGA-FD-A6TE-01 9 139649584 139649584 C G LCN8 Intron 0.27 TCGA-FD-A6TE-01 9 139658199 139658199 C G LCN15 Silent p.L91L 0.54 TCGA-FD-A6TE-01 9 21077682 21077682 C T IFNB1 Missense_Mutation p.E63K 0.54 tolerated(0.53) benign(0.012) TCGA-FD-A6TE-01 9 35061056 35061056 C A VCP Missense_Mutation p.A439S 0.40 tolerated(0.06) possibly_damaging(0.78) TCGA-FD-A6TE-01 9 6984286 6984286 C T KDM4C Silent p.V412V 0.50 TCGA-FD-A6TE-01 9 71998867 71998867 C A FAM189A2 Missense_Mutation p.S210Y 0.48 tolerated(0.31) benign(0.015) TCGA-FD-A6TE-01 X 137715036 137715036 G C FGF13 Missense_Mutation p.S248C 0.92 deleterious_low_confidence(0.01) benign(0.195) TCGA-FD-A6TE-01 X 16859890 16859890 G C TXLNG 3'UTR 0.93 TCGA-FD-A6TE-01 X 16859914 16859914 G A TXLNG 3'UTR 0.97 TCGA-FD-A6TE-01 X 2835843 2835843 A G ARSD Splice_Site p.X288_splice 0.50 TCGA-FD-A6TE-01 X 53432541 53432541 G A SMC1A Missense_Mutation p.R599C 1.00 deleterious(0) probably_damaging(0.953) TCGA-FD-A6TE-01 X 74494354 74494354 G A UPRT Missense_Mutation p.D89N 0.89 deleterious(0.01) benign(0.208) TCGA-FD-A6TF-01 10 116060221 116060221 C G AFAP1L2 Missense_Mutation p.E591Q 0.07 tolerated(0.19) benign(0.06) TCGA-FD-A6TF-01 10 118435909 118435909 C T HSPA12A Splice_Site p.X464_splice 0.07 TCGA-FD-A6TF-01 10 134649690 134649690 G A TTC40 Missense_Mutation p.P2190L 0.23 deleterious(0) possibly_damaging(0.801) TCGA-FD-A6TF-01 10 135053699 135053699 G A VENTX Silent p.G222G 0.17 TCGA-FD-A6TF-01 10 18629686 18629686 G C CACNB2 Intron 0.17 TCGA-FD-A6TF-01 10 24762399 24762399 C - KIAA1217 Frame_Shift_Del p.P364Qfs*5 0.24 TCGA-FD-A6TF-01 10 28824570 28824570 C A WAC Nonsense_Mutation p.S53* 0.42 TCGA-FD-A6TF-01 10 38121011 38121011 G C ZNF248 Silent p.T424T 0.05 TCGA-FD-A6TF-01 10 38645382 38645382 G A HSD17B7P2 RNA 0.30 TCGA-FD-A6TF-01 10 86001142 86001142 C T LRIT1 Silent p.Q18Q 0.21 TCGA-FD-A6TF-01 11 113075131 113075131 A G NCAM1 Missense_Mutation p.Y143C 0.17 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TF-01 11 113694378 113694378 C A USP28 Missense_Mutation p.C411F 0.12 deleterious(0) benign(0.039) TCGA-FD-A6TF-01 11 124861430 124861430 A G CCDC15 Missense_Mutation p.Y661C 0.33 tolerated(0.22) benign(0.168) TCGA-FD-A6TF-01 11 44105089 44105089 G T ACCS Missense_Mutation p.R457L 0.23 deleterious(0) probably_damaging(1) TCGA-FD-A6TF-01 11 59282551 59282551 C T OR4D9 Missense_Mutation p.H56Y 0.25 deleterious(0.01) probably_damaging(0.912) TCGA-FD-A6TF-01 11 63681768 63681768 C G RCOR2 Missense_Mutation p.E214Q 0.13 deleterious(0.05) possibly_damaging(0.894) TCGA-FD-A6TF-01 11 64337172 64337172 G A SLC22A11 Missense_Mutation p.M477I 0.19 tolerated(1) benign(0.006) TCGA-FD-A6TF-01 11 64527244 64527244 C A PYGM Missense_Mutation p.D43Y 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-FD-A6TF-01 11 67163640 67163640 C G RAD9A Missense_Mutation p.P243R 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TF-01 11 9043486 9043486 G C SCUBE2 Silent p.L900L 0.09 TCGA-FD-A6TF-01 11 95555688 95555688 C T CEP57 Missense_Mutation p.A278V 0.10 tolerated(0.18) benign(0.006) TCGA-FD-A6TF-01 12 123089118 123089118 C G KNTC1 Missense_Mutation p.F1703L 0.13 tolerated(0.65) benign(0.01) TCGA-FD-A6TF-01 12 123186807 123186807 G C HCAR2 Missense_Mutation p.P342A 0.24 tolerated_low_confidence(0.14) benign(0.002) TCGA-FD-A6TF-01 12 49690271 49690271 G A PRPH Silent p.L221L 0.19 TCGA-FD-A6TF-01 12 56215899 56215899 C G DNAJC14 Missense_Mutation p.Q657H 0.17 tolerated(0.07) benign(0.006) TCGA-FD-A6TF-01 12 98927231 98927231 C G TMPO Missense_Mutation p.S399C 0.20 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-FD-A6TF-01 13 48947540 48947540 G C RB1 Splice_Site p.X376_splice 0.33 TCGA-FD-A6TF-01 14 106329445 106329445 G A IGHJ6 Silent p.D8D 0.36 TCGA-FD-A6TF-01 14 21551005 21551005 C T ARHGEF40 Missense_Mutation p.L1168F 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-FD-A6TF-01 15 31294288 31294288 G A TRPM1 Nonsense_Mutation p.R1556* 0.25 TCGA-FD-A6TF-01 15 50226328 50226328 G A ATP8B4 Nonsense_Mutation p.Q447* 0.22 TCGA-FD-A6TF-01 15 51350126 51350126 C G TNFAIP8L3 Missense_Mutation p.K277N 0.08 tolerated(0.13) probably_damaging(0.984) TCGA-FD-A6TF-01 15 63935610 63935610 G C HERC1 Missense_Mutation p.S3775C 0.21 probably_damaging(0.999) TCGA-FD-A6TF-01 15 75650904 75650904 G A MAN2C1 Missense_Mutation p.R785W 0.15 deleterious(0) probably_damaging(0.963) TCGA-FD-A6TF-01 15 78449893 78449893 C T IDH3A Nonsense_Mutation p.Q32* 0.15 TCGA-FD-A6TF-01 15 85400403 85400403 C T ALPK3 Nonsense_Mutation p.Q1014* 0.11 TCGA-FD-A6TF-01 15 90796578 90796578 C G TTLL13 Silent p.V132V 0.19 TCGA-FD-A6TF-01 15 99442715 99442715 C A IGF1R Missense_Mutation p.A371D 0.32 deleterious(0.03) possibly_damaging(0.873) TCGA-FD-A6TF-01 16 24582447 24582447 A G RBBP6 Missense_Mutation p.T1354A 0.13 tolerated_low_confidence(0.4) unknown(0) TCGA-FD-A6TF-01 16 31405583 31405583 C T ITGAD Silent p.L20L 0.14 TCGA-FD-A6TF-01 16 56700741 56700741 G A MT1G 3'UTR 0.26 TCGA-FD-A6TF-01 16 56782202 56782202 C T NUP93 Nonsense_Mutation p.Q15* 0.22 TCGA-FD-A6TF-01 16 81969814 81969814 G A PLCG2 Silent p.T961T 0.25 TCGA-FD-A6TF-01 16 83842312 83842312 G C HSBP1 Missense_Mutation p.D25H 0.32 deleterious(0) possibly_damaging(0.452) TCGA-FD-A6TF-01 16 89761718 89761718 G C CDK10 Missense_Mutation p.C317S 0.18 tolerated(0.11) benign(0.032) TCGA-FD-A6TF-01 17 10532971 10532971 G A MYH3 Silent p.I1913I 0.25 TCGA-FD-A6TF-01 17 16722402 16722402 C T AC022596.6 RNA 0.13 TCGA-FD-A6TF-01 17 19459337 19459337 C G SLC47A1 Missense_Mutation p.Q295E 0.16 deleterious(0) probably_damaging(0.976) TCGA-FD-A6TF-01 17 3324614 3324614 C G OR3A3 Silent p.G251G 0.16 TCGA-FD-A6TF-01 17 34893190 34893190 C A PIGW Silent p.L80L 0.19 TCGA-FD-A6TF-01 17 3560053 3560053 C T CTNS Silent p.L215L 0.18 TCGA-FD-A6TF-01 17 35837094 35837094 A G TADA2A 3'UTR 0.28 TCGA-FD-A6TF-01 17 40556939 40556939 G A PTRF Silent p.T313T 0.29 TCGA-FD-A6TF-01 17 40820285 40820285 C T PLEKHH3 Missense_Mutation p.A748T 0.33 tolerated(0.22) probably_damaging(0.951) TCGA-FD-A6TF-01 17 4100767 4100767 G A ANKFY1 Missense_Mutation p.S377L 0.11 tolerated(0.36) benign(0.037) TCGA-FD-A6TF-01 17 57322900 57322900 T C GDPD1 Missense_Mutation p.L104P 0.09 deleterious(0) probably_damaging(0.954) TCGA-FD-A6TF-01 17 58740881 58740881 C T PPM1D Missense_Mutation p.H596Y 0.12 deleterious_low_confidence(0.01) benign(0.153) TCGA-FD-A6TF-01 17 74019370 74019370 G C EVPL Intron 0.20 TCGA-FD-A6TF-01 17 7577594 7577595 AC - TP53 Frame_Shift_Del p.C229Yfs*10 0.44 TCGA-FD-A6TF-01 17 8052875 8052875 C T PER1 Missense_Mutation p.R253H 0.22 deleterious(0.03) possibly_damaging(0.835) TCGA-FD-A6TF-01 18 44560637 44560637 C T TCEB3B Silent p.S333S 0.13 TCGA-FD-A6TF-01 18 51013255 51013255 G A DCC Silent p.P1275P 0.36 TCGA-FD-A6TF-01 18 55355706 55355706 G A ATP8B1 Silent p.F418F 0.07 TCGA-FD-A6TF-01 19 10097023 10097023 C T COL5A3 Missense_Mutation p.E774K 0.25 unknown(0) TCGA-FD-A6TF-01 19 11591418 11591418 G A ELAVL3 Silent p.V2V 0.25 TCGA-FD-A6TF-01 19 15355173 15355173 A C BRD4 Missense_Mutation p.F817C 0.12 possibly_damaging(0.759) TCGA-FD-A6TF-01 19 19976728 19976728 G T ZNF253 5'UTR 0.21 TCGA-FD-A6TF-01 19 21239810 21239810 T C ZNF430 Silent p.S232S 0.17 TCGA-FD-A6TF-01 19 22940321 22940321 G A ZNF99 Missense_Mutation p.A797V 0.15 tolerated(0.11) possibly_damaging(0.856) TCGA-FD-A6TF-01 19 31040177 31040177 C T ZNF536 Silent p.P1217P 0.18 TCGA-FD-A6TF-01 19 32899191 32899191 G C DPY19L3 Missense_Mutation p.R11T 0.23 deleterious(0.04) benign(0.011) TCGA-FD-A6TF-01 19 34263197 34263197 G A CHST8 Silent p.R168R 0.18 TCGA-FD-A6TF-01 19 39233670 39233670 C T CAPN12 Intron 0.13 TCGA-FD-A6TF-01 19 40542401 40542401 G A ZNF780B Missense_Mutation p.S122L 0.42 tolerated(0.66) benign(0) TCGA-FD-A6TF-01 19 4793046 4793046 C T FEM1A Missense_Mutation p.R394C 0.16 deleterious(0.02) probably_damaging(1) TCGA-FD-A6TF-01 19 49993227 49993227 C T RPL13A Intron 0.06 TCGA-FD-A6TF-01 19 51217100 51217100 G A SHANK1 Silent p.T249T 0.19 TCGA-FD-A6TF-01 19 53959253 53959253 G C ZNF761 RNA 0.17 TCGA-FD-A6TF-01 19 8615579 8615579 C G MYO1F Splice_Site p.X258_splice 0.12 TCGA-FD-A6TF-01 1 12262095 12262095 G T TNFRSF1B Silent p.P324P 0.22 TCGA-FD-A6TF-01 1 150551420 150551420 G C MCL1 Missense_Mutation p.T196R 0.37 tolerated(0.1) benign(0.036) TCGA-FD-A6TF-01 1 152732667 152732667 C G KPRP Missense_Mutation p.C201W 0.10 deleterious(0.04) benign(0) TCGA-FD-A6TF-01 1 158548961 158548961 C T OR10X1 Silent p.R243R 0.14 TCGA-FD-A6TF-01 1 159558454 159558454 G C APCS Missense_Mutation p.E210Q 0.10 tolerated(0.13) benign(0.067) TCGA-FD-A6TF-01 1 163325138 163325138 A C NUF2 Missense_Mutation p.N425T 0.24 tolerated(1) benign(0.001) TCGA-FD-A6TF-01 1 172571243 172571243 C G SUCO Missense_Mutation p.L1020V 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-FD-A6TF-01 1 214830302 214830302 G A CENPF Missense_Mutation p.E2838K 0.20 benign(0.103) TCGA-FD-A6TF-01 1 234509413 234509413 G T COA6 5'Flank 0.32 TCGA-FD-A6TF-01 1 34037226 34037226 G A CSMD2 Silent p.I2623I 0.10 TCGA-FD-A6TF-01 1 46067943 46067943 G A NASP Missense_Mutation p.E42K 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-FD-A6TF-01 1 46874223 46874223 G C FAAH Missense_Mutation p.E348D 0.12 deleterious(0.05) probably_damaging(0.989) TCGA-FD-A6TF-01 1 52903943 52903943 C T ZCCHC11 Missense_Mutation p.R1296H 0.13 deleterious(0) possibly_damaging(0.83) TCGA-FD-A6TF-01 1 67558979 67558979 C G C1orf141 Missense_Mutation p.Q304H 0.07 deleterious(0.02) possibly_damaging(0.891) TCGA-FD-A6TF-01 1 79470876 79470876 G T ELTD1 Silent p.S17S 0.15 TCGA-FD-A6TF-01 1 89474722 89474722 G C GBP3 Missense_Mutation p.Q523E 0.12 tolerated(0.29) benign(0.005) TCGA-FD-A6TF-01 1 92178019 92178019 C T TGFBR3 Silent p.R649R 0.11 TCGA-FD-A6TF-01 20 21143112 21143112 T C RP4-777D9.2 Intron 0.17 TCGA-FD-A6TF-01 20 31805345 31805345 G A BPIFA3 Translation_Start_Site p.M1? 0.08 benign(0.019) TCGA-FD-A6TF-01 20 39316780 39316780 G A MAFB Silent p.I237I 0.26 TCGA-FD-A6TF-01 20 39317352 39317352 T C MAFB Missense_Mutation p.T47A 0.25 tolerated(0.46) benign(0.055) TCGA-FD-A6TF-01 20 42682998 42682998 G C TOX2 Missense_Mutation p.K237N 0.09 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TF-01 20 49366916 49366916 C G PARD6B Missense_Mutation p.S337C 0.24 deleterious_low_confidence(0.01) benign(0.198) TCGA-FD-A6TF-01 21 35468263 35468263 G A SLC5A3 Missense_Mutation p.D256N 0.15 tolerated(0.31) possibly_damaging(0.534) TCGA-FD-A6TF-01 22 39482442 39482442 C A APOBEC3G Missense_Mutation p.F298L 0.11 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TF-01 22 45789601 45789601 A G SMC1B Silent p.N486N 0.27 TCGA-FD-A6TF-01 22 50987789 50987789 C G KLHDC7B Silent p.L398L 0.13 TCGA-FD-A6TF-01 2 131812912 131812912 G A FAM168B Silent p.I136I 0.16 TCGA-FD-A6TF-01 2 179599220 179599220 C G TTN Missense_Mutation p.D5111H 0.31 TCGA-FD-A6TF-01 2 185798461 185798461 G T ZNF804A Splice_Site p.X129_splice 0.13 TCGA-FD-A6TF-01 2 215645654 215645654 G A BARD1 Missense_Mutation p.P315L 0.11 deleterious(0.04) benign(0.02) TCGA-FD-A6TF-01 2 215884153 215884154 - C ABCA12 Frame_Shift_Ins p.Q522Afs*23 0.28 TCGA-FD-A6TF-01 2 241808623 241808623 T A AGXT Missense_Mutation p.F68I 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A6TF-01 2 242277199 242277199 G A SEPT2 Silent p.K196K 0.15 TCGA-FD-A6TF-01 2 27016063 27016063 C T CENPA Silent p.T113T 0.07 TCGA-FD-A6TF-01 2 33534500 33534500 G C LTBP1 Splice_Site p.X1161_splice 0.15 TCGA-FD-A6TF-01 2 3461452 3461452 G A TRAPPC12 Missense_Mutation p.E531K 0.07 deleterious(0.04) possibly_damaging(0.655) TCGA-FD-A6TF-01 2 55844392 55844392 G A SMEK2 Silent p.V10V 0.28 TCGA-FD-A6TF-01 2 74761833 74761833 G C LOXL3 Missense_Mutation p.H550D 0.24 tolerated(0.08) probably_damaging(0.976) TCGA-FD-A6TF-01 2 97779656 97779656 G C ANKRD36 Missense_Mutation p.K60N 0.29 tolerated(0.16) possibly_damaging(0.826) TCGA-FD-A6TF-01 3 10283932 10283932 G A IRAK2 3'UTR 0.09 TCGA-FD-A6TF-01 3 11301359 11301359 G C HRH1 Missense_Mutation p.K212N 0.14 deleterious(0.04) benign(0.169) TCGA-FD-A6TF-01 3 11340299 11340299 C T ATG7 Missense_Mutation p.P44S 0.21 tolerated(0.28) benign(0.115) TCGA-FD-A6TF-01 3 185434259 185434259 C T C3orf65 Missense_Mutation p.S31F 0.23 deleterious_low_confidence(0.03) benign(0.354) TCGA-FD-A6TF-01 3 195516137 195516137 G - MUC4 Frame_Shift_Del p.H772Ifs*88 0.12 TCGA-FD-A6TF-01 3 196083630 196083630 G C UBXN7 Missense_Mutation p.L466V 0.10 deleterious(0.01) possibly_damaging(0.457) TCGA-FD-A6TF-01 3 32932722 32932722 C T TRIM71 Missense_Mutation p.R676C 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TF-01 3 38293862 38293862 T C OXSR1 Silent p.N496N 0.05 TCGA-FD-A6TF-01 3 49941026 49941026 G A MST1R Missense_Mutation p.P6L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-FD-A6TF-01 3 51990556 51990556 C G GPR62 Silent p.P296P 0.23 TCGA-FD-A6TF-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A6TF-01 3 99895184 99895184 G C CMSS1 Missense_Mutation p.L227F 0.15 deleterious(0) probably_damaging(0.955) TCGA-FD-A6TF-01 4 114286205 114286205 C T ANK2 Silent p.L3633L 0.14 TCGA-FD-A6TF-01 4 13338979 13338979 C T HSP90AB2P RNA 0.15 TCGA-FD-A6TF-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A6TF-01 4 81123172 81123172 G C PRDM8 Missense_Mutation p.D186H 0.15 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FD-A6TF-01 5 101834545 101834545 A T SLCO6A1 Missense_Mutation p.F2I 0.15 tolerated_low_confidence(0.45) benign(0.009) TCGA-FD-A6TF-01 5 102432314 102432314 C A GIN1 Missense_Mutation p.G409W 0.28 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TF-01 5 14482691 14482691 G T TRIO Missense_Mutation p.G2156W 0.16 benign(0.038) TCGA-FD-A6TF-01 5 172195691 172195691 G C DUSP1 3'UTR 0.14 TCGA-FD-A6TF-01 5 54275189 54275189 C T ESM1 Missense_Mutation p.V176I 0.22 tolerated(0.43) benign(0.021) TCGA-FD-A6TF-01 5 75884788 75884788 A G IQGAP2 Silent p.V172V 0.21 TCGA-FD-A6TF-01 5 7626358 7626358 C T ADCY2 Nonsense_Mutation p.Q217* 0.20 TCGA-FD-A6TF-01 5 79854881 79854881 C A ANKRD34B Missense_Mutation p.D320Y 0.08 deleterious(0) possibly_damaging(0.905) TCGA-FD-A6TF-01 5 82352815 82352815 G C TMEM167A 3'UTR 0.22 TCGA-FD-A6TF-01 6 110522829 110522829 C T CDC40 Silent p.A115A 0.21 TCGA-FD-A6TF-01 6 116600549 116600549 C G TSPYL1 Missense_Mutation p.E149Q 0.12 tolerated(0.06) benign(0.003) TCGA-FD-A6TF-01 6 118887246 118887246 A T CEP85L Missense_Mutation p.W159R 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A6TF-01 6 132203482 132203482 C T ENPP1 Intron 0.13 TCGA-FD-A6TF-01 6 135787124 135787124 G A AHI1 Nonsense_Mutation p.Q193* 0.15 TCGA-FD-A6TF-01 6 151757583 151757583 C T RMND1 Missense_Mutation p.R204K 0.12 tolerated(0.06) benign(0.41) TCGA-FD-A6TF-01 6 161162380 161162380 C G PLG Missense_Mutation p.L686V 0.06 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TF-01 6 25918738 25918738 C T SLC17A2 Nonsense_Mutation p.W209* 0.14 TCGA-FD-A6TF-01 6 26091209 26091209 C A HFE Missense_Mutation p.P73T 0.10 deleterious(0.02) benign(0.427) TCGA-FD-A6TF-01 6 28964084 28964084 G C ZNF311 Nonsense_Mutation p.S232* 0.09 TCGA-FD-A6TF-01 6 29274513 29274513 C G OR14J1 Missense_Mutation p.S16C 0.11 deleterious(0) probably_damaging(0.954) TCGA-FD-A6TF-01 6 31711796 31711796 C T MSH5 Silent p.L177L 0.12 TCGA-FD-A6TF-01 6 394886 394886 G T IRF4 Missense_Mutation p.K94N 0.12 deleterious(0) probably_damaging(0.986) TCGA-FD-A6TF-01 6 6182376 6182376 T C F13A1 Splice_Site p.X436_splice 0.09 TCGA-FD-A6TF-01 6 7862684 7862684 A T BMP6 Missense_Mutation p.N386I 0.21 deleterious(0.01) possibly_damaging(0.793) TCGA-FD-A6TF-01 7 104909276 104909276 A C SRPK2 Intron 0.11 TCGA-FD-A6TF-01 7 117060282 117060282 C T ASZ1 Silent p.E125E 0.26 TCGA-FD-A6TF-01 7 117359646 117359646 C G CTTNBP2 Missense_Mutation p.R1519T 0.15 deleterious(0.03) benign(0.394) TCGA-FD-A6TF-01 7 135272739 135272739 A G NUP205 Missense_Mutation p.Q491R 0.18 deleterious(0.01) possibly_damaging(0.895) TCGA-FD-A6TF-01 7 142612099 142612099 G T TRPV5 Missense_Mutation p.F468L 0.09 deleterious(0.05) possibly_damaging(0.685) TCGA-FD-A6TF-01 7 18066805 18066805 C T PRPS1L1 Missense_Mutation p.E201K 0.15 tolerated(0.1) benign(0.067) TCGA-FD-A6TF-01 7 27195962 27195962 G A HOXA7 Missense_Mutation p.S68F 0.20 deleterious(0.01) possibly_damaging(0.548) TCGA-FD-A6TF-01 7 44736566 44736566 G A OGDH Missense_Mutation p.D652N 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TF-01 7 44806116 44806116 C T ZMIZ2 Missense_Mutation p.H837Y 0.10 deleterious(0.01) possibly_damaging(0.783) TCGA-FD-A6TF-01 7 55863554 55863554 C A SEPT14 3'UTR 0.15 TCGA-FD-A6TF-01 7 71175781 71175781 G A WBSCR17 Silent p.L512L 0.09 TCGA-FD-A6TF-01 7 72891868 72891868 C G BAZ1B Missense_Mutation p.L641F 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TF-01 7 77256074 77256074 C T PTPN12 Missense_Mutation p.H360Y 0.10 deleterious(0.03) possibly_damaging(0.904) TCGA-FD-A6TF-01 7 98478790 98478790 C T TRRAP Missense_Mutation p.T6I 0.08 possibly_damaging(0.507) TCGA-FD-A6TF-01 7 98592261 98592261 G C TRRAP Missense_Mutation p.E3353Q 0.10 probably_damaging(0.968) TCGA-FD-A6TF-01 7 99661410 99661410 G C ZSCAN21 Splice_Site p.X198_splice 0.18 TCGA-FD-A6TF-01 8 104898002 104898002 C G RIMS2 Nonsense_Mutation p.S392* 0.11 TCGA-FD-A6TF-01 8 110099994 110099994 G A TRHR Missense_Mutation p.D85N 0.34 deleterious(0.05) benign(0.082) TCGA-FD-A6TF-01 9 125563203 125563203 G A OR1K1 Missense_Mutation p.E268K 0.10 deleterious(0.02) benign(0.002) TCGA-FD-A6TF-01 9 135781102 135781102 G C TSC1 Missense_Mutation p.I621M 0.13 tolerated(0.1) benign(0.363) TCGA-FD-A6TF-01 9 136304511 136304511 C A ADAMTS13 Missense_Mutation p.T577N 0.23 tolerated(0.13) possibly_damaging(0.757) TCGA-FD-A6TF-01 9 138671272 138671272 C T KCNT1 Missense_Mutation p.R933C 0.17 deleterious(0.03) possibly_damaging(0.836) TCGA-FD-A6TF-01 9 20620697 20620721 TTCTCCACAAAGTGCTGTATGTTAC - MLLT3 Frame_Shift_Del p.S42Kfs*24 0.11 TCGA-FD-A6TF-01 X 12736323 12736323 C G FRMPD4 Silent p.A1126A 0.10 TCGA-FD-A6TF-01 X 132159465 132159465 G A USP26 3'UTR 0.09 TCGA-FD-A6TF-01 X 140995722 140995722 G C MAGEC1 Missense_Mutation p.K844N 0.07 tolerated_low_confidence(0.12) unknown(0) TCGA-FD-A6TF-01 X 145075844 145075844 G A MIR890 RNA 0.33 TCGA-FD-A6TF-01 X 153197564 153197564 G A NAA10 Missense_Mutation p.R116W 0.21 tolerated(0.07) benign(0.373) TCGA-FD-A6TF-01 X 153715823 153715823 G A SLC10A3 3'UTR 0.23 TCGA-FD-A6TF-01 X 34148161 34148161 G A FAM47A Silent p.S745S 0.14 TCGA-FD-A6TF-01 X 41414860 41414860 C T CASK Missense_Mutation p.G612E 0.22 tolerated(0.13) possibly_damaging(0.52) TCGA-FD-A6TF-01 X 46359668 46359668 C G ZNF674 Missense_Mutation p.E452D 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-FD-A6TF-01 X 70387301 70387301 G C NLGN3 Missense_Mutation p.E452Q 0.10 deleterious(0.05) probably_damaging(0.992) TCGA-FD-A6TF-01 X 73042848 73042848 G A XIST RNA 0.12 TCGA-FD-A6TF-01 X 73066224 73066224 G C XIST RNA 0.08 TCGA-FD-A6TG-01 10 101090463 101090463 T C CNNM1 Missense_Mutation p.F440S 0.12 deleterious(0) probably_damaging(0.968) TCGA-FD-A6TG-01 10 104242807 104242807 C T ACTR1A Silent p.E237E 0.10 TCGA-FD-A6TG-01 10 119014867 119014867 C G SLC18A2 Silent p.L260L 0.10 TCGA-FD-A6TG-01 10 121586873 121586873 C T INPP5F Nonsense_Mutation p.Q994* 0.16 TCGA-FD-A6TG-01 10 129914153 129914153 G C MKI67 Missense_Mutation p.D173E 0.11 deleterious(0.02) benign(0.002) TCGA-FD-A6TG-01 10 129914155 129914155 C G MKI67 Missense_Mutation p.D173H 0.11 deleterious(0.01) benign(0.36) TCGA-FD-A6TG-01 10 135125258 135125258 G T ZNF511 Missense_Mutation p.R198L 0.13 tolerated(0.28) benign(0.014) TCGA-FD-A6TG-01 10 20290822 20290822 G T PLXDC2 Silent p.T77T 0.12 TCGA-FD-A6TG-01 10 25888133 25888133 C T GPR158 Missense_Mutation p.S1193F 0.08 deleterious_low_confidence(0.02) benign(0.004) TCGA-FD-A6TG-01 10 28822545 28822545 G A WAC Missense_Mutation p.D13N 0.23 deleterious(0) benign(0) TCGA-FD-A6TG-01 10 32576199 32576199 C T EPC1 Missense_Mutation p.D327N 0.11 deleterious(0.05) benign(0.092) TCGA-FD-A6TG-01 10 38652525 38652525 G T HSD17B7P2 RNA 0.12 TCGA-FD-A6TG-01 10 5810194 5810194 G A GDI2 Nonsense_Mutation p.Q325* 0.06 TCGA-FD-A6TG-01 10 5842606 5842606 G C GDI2 Missense_Mutation p.N36K 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A6TG-01 10 7285523 7285523 T C SFMBT2 Missense_Mutation p.K373E 0.25 tolerated(0.26) possibly_damaging(0.808) TCGA-FD-A6TG-01 10 74908079 74908079 G C ECD Silent p.L332L 0.10 TCGA-FD-A6TG-01 10 75562954 75562954 G C NDST2 Missense_Mutation p.S769C 0.09 deleterious(0.02) possibly_damaging(0.781) TCGA-FD-A6TG-01 10 93593634 93593634 C G TNKS2 Missense_Mutation p.Q434E 0.18 tolerated(0.08) probably_damaging(0.964) TCGA-FD-A6TG-01 10 96702001 96702001 C T CYP2C9 Silent p.L128L 0.06 TCGA-FD-A6TG-01 10 98416660 98416660 C T PIK3AP1 Silent p.E154E 0.14 TCGA-FD-A6TG-01 11 102584485 102584485 G T MMP8 Missense_Mutation p.H432N 0.51 tolerated(0.11) benign(0.005) TCGA-FD-A6TG-01 11 104905038 104905038 C G CASP1 Missense_Mutation p.L57F 0.08 tolerated(0.18) benign(0.253) TCGA-FD-A6TG-01 11 107463112 107463112 G C AP000889.3 Missense_Mutation p.E104Q 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.859) TCGA-FD-A6TG-01 11 111414781 111414781 C T LAYN Silent p.I81I 0.22 TCGA-FD-A6TG-01 11 113215139 113215139 C T TTC12 Silent p.I377I 0.46 TCGA-FD-A6TG-01 11 118376446 118376446 C T KMT2A Missense_Mutation p.S3280L 0.21 benign(0.08) TCGA-FD-A6TG-01 11 118529630 118529630 G T TREH Nonsense_Mutation p.S510* 0.17 TCGA-FD-A6TG-01 11 119031019 119031019 C G ABCG4 Nonsense_Mutation p.S507* 0.12 TCGA-FD-A6TG-01 11 120531033 120531033 C T GRIK4 Silent p.P2P 0.50 TCGA-FD-A6TG-01 11 123676458 123676458 A T OR6M1 Silent p.S200S 0.33 TCGA-FD-A6TG-01 11 124310304 124310304 G A OR8B8 Silent p.F226F 0.45 TCGA-FD-A6TG-01 11 35287049 35287049 C A SLC1A2 Intron 0.31 TCGA-FD-A6TG-01 11 44228470 44228470 C T EXT2 Silent p.I574I 0.12 TCGA-FD-A6TG-01 11 4615934 4615934 T C OR52I1 Silent p.Y222Y 0.21 TCGA-FD-A6TG-01 11 46750322 46750322 G A F2 Silent p.K469K 0.16 TCGA-FD-A6TG-01 11 49168239 49168239 T C FOLH1 3'UTR 0.64 TCGA-FD-A6TG-01 11 55135608 55135608 G A OR4A15 Silent p.L83L 0.47 TCGA-FD-A6TG-01 11 55797916 55797916 A G OR5AS1 Missense_Mutation p.M8V 0.45 tolerated(0.34) benign(0.01) TCGA-FD-A6TG-01 11 5968635 5968635 G A OR56A3 Missense_Mutation p.C20Y 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TG-01 11 60565890 60565890 C T MS4A10 Missense_Mutation p.P209S 0.21 deleterious(0.03) possibly_damaging(0.857) TCGA-FD-A6TG-01 11 64011558 64011558 A C FKBP2 3'UTR 0.14 TCGA-FD-A6TG-01 11 64821924 64821924 C T NAALADL1 Intron 0.55 TCGA-FD-A6TG-01 11 65547169 65547169 C T AP5B1 Silent p.R265R 0.10 TCGA-FD-A6TG-01 11 66983389 66983389 C T KDM2A Missense_Mutation p.S219F 0.29 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 11 67200436 67200436 G C RPS6KB2 Silent p.L210L 0.13 TCGA-FD-A6TG-01 11 71939184 71939184 C T INPPL1 Intron 0.52 TCGA-FD-A6TG-01 11 73806368 73806368 G T C2CD3 Missense_Mutation p.T1022K 0.10 deleterious(0) probably_damaging(0.978) TCGA-FD-A6TG-01 11 75298211 75298211 G C MAP6 Missense_Mutation p.L779V 0.08 tolerated_low_confidence(0.07) probably_damaging(0.978) TCGA-FD-A6TG-01 11 76944075 76944075 A G GDPD4 Missense_Mutation p.F462L 0.39 tolerated(0.7) benign(0.008) TCGA-FD-A6TG-01 11 85437446 85437446 C G SYTL2 Missense_Mutation p.L18F 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A6TG-01 11 85956304 85956304 G C EED Silent p.A11A 0.46 TCGA-FD-A6TG-01 11 93530718 93530718 G C MED17 Missense_Mutation p.L387F 0.06 deleterious(0.03) benign(0.394) TCGA-FD-A6TG-01 12 105527675 105527675 G T KIAA1033 Splice_Site p.X442_splice 0.17 TCGA-FD-A6TG-01 12 106461351 106461351 G C NUAK1 Missense_Mutation p.S405R 0.13 tolerated(0.25) possibly_damaging(0.46) TCGA-FD-A6TG-01 12 113552642 113552642 C G RASAL1 Missense_Mutation p.E382Q 0.05 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 12 118693461 118693461 C T TAOK3 Splice_Site 0.18 TCGA-FD-A6TG-01 12 121134181 121134181 G A MLEC Missense_Mutation p.E238K 0.15 tolerated(0.21) benign(0.008) TCGA-FD-A6TG-01 12 122758610 122758610 C T CLIP1 Missense_Mutation p.G1356R 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A6TG-01 12 123311015 123311015 G A CCDC62 3'UTR 0.11 TCGA-FD-A6TG-01 12 125396470 125396470 C T UBC Silent p.L616L 0.09 TCGA-FD-A6TG-01 12 125397108 125397108 C T UBC Missense_Mutation p.E404K 0.10 tolerated(0.14) benign(0.01) TCGA-FD-A6TG-01 12 126137056 126137056 A G TMEM132B Missense_Mutation p.I657V 0.19 tolerated(0.38) benign(0.355) TCGA-FD-A6TG-01 12 1292587 1292587 G A ERC1 Silent p.K719K 0.23 TCGA-FD-A6TG-01 12 133306729 133306729 C T ANKLE2 Silent p.R673R 0.08 TCGA-FD-A6TG-01 12 133378369 133378369 T A GOLGA3 Missense_Mutation p.E595V 0.25 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 12 1702297 1702297 G A FBXL14 Silent p.L312L 0.37 TCGA-FD-A6TG-01 12 19506844 19506844 C T PLEKHA5 Missense_Mutation p.P1016S 0.17 tolerated(0.05) benign(0.126) TCGA-FD-A6TG-01 12 3104055 3104055 C A TEAD4 Silent p.G41G 0.14 TCGA-FD-A6TG-01 12 3765483 3765483 C T EFCAB4B Silent p.Q284Q 0.28 TCGA-FD-A6TG-01 12 40223952 40223952 G A SLC2A13 Silent p.S466S 0.12 TCGA-FD-A6TG-01 12 40645150 40645150 T C LRRK2 Missense_Mutation p.W359R 0.14 tolerated(0.4) benign(0.001) TCGA-FD-A6TG-01 12 48272843 48272843 C G VDR Silent p.R68R 0.26 TCGA-FD-A6TG-01 12 50369356 50369356 G A AQP6 Missense_Mutation p.G251S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-FD-A6TG-01 12 53170485 53170485 G A KRT76 Silent p.F197F 0.07 TCGA-FD-A6TG-01 12 53668712 53668712 G T ESPL1 Nonsense_Mutation p.E540* 0.15 TCGA-FD-A6TG-01 12 54925978 54925978 C G NCKAP1L Missense_Mutation p.L936V 0.13 deleterious(0) possibly_damaging(0.609) TCGA-FD-A6TG-01 12 55641164 55641164 C A OR6C74 Missense_Mutation p.F31L 0.10 tolerated_low_confidence(1) benign(0.002) TCGA-FD-A6TG-01 12 56478854 56478854 G T ERBB3 Missense_Mutation p.V104L 0.10 deleterious(0.03) benign(0.22) TCGA-FD-A6TG-01 12 57432281 57432281 G A MYO1A Missense_Mutation p.R559C 0.09 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 12 57588213 57588213 C G LRP1 Silent p.L2665L 0.10 TCGA-FD-A6TG-01 12 66849204 66849204 C T GRIP1 Missense_Mutation p.D395N 0.04 tolerated(0.15) possibly_damaging(0.572) TCGA-FD-A6TG-01 12 68715396 68715396 C G MDM1 Missense_Mutation p.D272H 0.06 deleterious(0.04) probably_damaging(0.93) TCGA-FD-A6TG-01 12 69090606 69090606 G A NUP107 Missense_Mutation p.M152I 0.51 tolerated(0.3) benign(0.001) TCGA-FD-A6TG-01 12 7046376 7046376 A G ATN1 Missense_Mutation p.Y649C 0.23 probably_damaging(0.996) TCGA-FD-A6TG-01 12 7048166 7048166 G C ATN1 Missense_Mutation p.D1014H 0.16 probably_damaging(0.997) TCGA-FD-A6TG-01 12 990891 990891 G C WNK1 Missense_Mutation p.E1049Q 0.12 tolerated(0.12) probably_damaging(0.997) TCGA-FD-A6TG-01 13 103299647 103299647 G C TPP2 Missense_Mutation p.D861H 0.08 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TG-01 13 111156567 111156567 G A COL4A2 Missense_Mutation p.G1453E 0.10 unknown(0) TCGA-FD-A6TG-01 13 21751154 21751154 G A MRP63 Silent p.Q33Q 0.09 TCGA-FD-A6TG-01 13 23909599 23909599 T C SACS Missense_Mutation p.M2806V 0.15 benign(0.018) TCGA-FD-A6TG-01 13 25670381 25670381 G - PABPC3 Frame_Shift_Del p.D17Tfs*6 0.13 TCGA-FD-A6TG-01 13 32850608 32850608 C T FRY Missense_Mutation p.S2765L 0.07 deleterious(0.03) probably_damaging(0.928) TCGA-FD-A6TG-01 13 33692301 33692301 C A STARD13 Missense_Mutation p.A728S 0.14 deleterious(0) probably_damaging(0.927) TCGA-FD-A6TG-01 13 46085987 46085987 A G COG3 Missense_Mutation p.K603E 0.07 deleterious(0) possibly_damaging(0.788) TCGA-FD-A6TG-01 13 49925046 49925046 T C CAB39L Missense_Mutation p.Y133C 0.15 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 13 61986352 61986352 A T PCDH20 Missense_Mutation p.L627H 0.21 deleterious(0) possibly_damaging(0.823) TCGA-FD-A6TG-01 13 67799854 67799854 G C PCDH9 Missense_Mutation p.P907A 0.19 tolerated(0.18) possibly_damaging(0.773) TCGA-FD-A6TG-01 13 95696555 95696555 C G ABCC4 Missense_Mutation p.L1198F 0.38 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TG-01 14 100123451 100123451 C G HHIPL1 Silent p.P339P 0.11 TCGA-FD-A6TG-01 14 105411777 105411777 C G AHNAK2 Missense_Mutation p.K3337N 0.13 benign(0.058) TCGA-FD-A6TG-01 14 106667770 106667770 G C IGHV3-20 Missense_Mutation p.S54R 0.10 tolerated_low_confidence(0.24) benign(0.008) TCGA-FD-A6TG-01 14 21971844 21971844 G A METTL3 Missense_Mutation p.P94L 0.09 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 14 23451472 23451472 C A AJUBA Nonsense_Mutation p.E2* 0.12 TCGA-FD-A6TG-01 14 23495356 23495356 C G PSMB5 Missense_Mutation p.R245P 0.10 deleterious(0.04) possibly_damaging(0.461) TCGA-FD-A6TG-01 14 23511540 23511540 C T PSMB11 Nonsense_Mutation p.Q36* 0.12 TCGA-FD-A6TG-01 14 23884655 23884655 C T MYH7 Missense_Mutation p.E1740K 0.15 deleterious(0.03) probably_damaging(0.971) TCGA-FD-A6TG-01 14 63784461 63784461 C A GPHB5 RNA 0.21 TCGA-FD-A6TG-01 14 73763990 73763990 C T NUMB Missense_Mutation p.G80R 0.15 deleterious(0.02) probably_damaging(0.985) TCGA-FD-A6TG-01 14 74040232 74040232 A G ACOT2 Missense_Mutation p.M262V 0.19 tolerated(0.43) benign(0.001) TCGA-FD-A6TG-01 14 92915497 92915497 G C SLC24A4 Missense_Mutation p.E273Q 0.10 tolerated(0.11) benign(0.126) TCGA-FD-A6TG-01 15 22929848 22929848 G A CYFIP1 Silent p.L174L 0.17 TCGA-FD-A6TG-01 15 26812790 26812790 G T GABRB3 Missense_Mutation p.T258K 0.15 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 15 33955087 33955087 G - RYR3 Frame_Shift_Del p.G1786Afs*67 0.14 TCGA-FD-A6TG-01 15 34092973 34092973 C G RYR3 Missense_Mutation p.S3278C 0.11 possibly_damaging(0.469) TCGA-FD-A6TG-01 15 35275547 35275547 T C ZNF770 Missense_Mutation p.N30S 0.32 tolerated(0.2) probably_damaging(0.993) TCGA-FD-A6TG-01 15 41149205 41149205 G T SPINT1 3'UTR 0.11 TCGA-FD-A6TG-01 15 43548861 43548861 C T TGM5 Missense_Mutation p.E154K 0.12 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TG-01 15 44105182 44105182 C T MFAP1 Intron 0.13 TCGA-FD-A6TG-01 15 44105312 44105312 C T MFAP1 Missense_Mutation p.E254K 0.16 tolerated(0.5) benign(0.115) TCGA-FD-A6TG-01 15 45415146 45415146 T C DUOXA1 Missense_Mutation p.T23A 0.26 tolerated(0.16) benign(0.058) TCGA-FD-A6TG-01 15 48566828 48566828 C G SLC12A1 Missense_Mutation p.I821M 0.12 tolerated(0.06) benign(0.379) TCGA-FD-A6TG-01 15 51772832 51772832 T A DMXL2 Silent p.V2157V 0.07 TCGA-FD-A6TG-01 15 51780153 51780153 C G DMXL2 Missense_Mutation p.E1739Q 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A6TG-01 15 56388525 56388525 C T RFX7 Missense_Mutation p.M467I 0.10 deleterious(0.04) benign(0.004) TCGA-FD-A6TG-01 15 57921945 57921945 C G GCOM1 Missense_Mutation p.Q191E 0.07 tolerated(0.8) benign(0.011) TCGA-FD-A6TG-01 15 58974428 58974428 C T ADAM10 Missense_Mutation p.D98N 0.18 tolerated(0.19) benign(0.142) TCGA-FD-A6TG-01 15 62212493 62212493 G C VPS13C Missense_Mutation p.S2417C 0.18 tolerated(0.17) benign(0.013) TCGA-FD-A6TG-01 15 63433491 63433491 C A LACTB Nonsense_Mutation p.Y377* 0.07 TCGA-FD-A6TG-01 15 65208032 65208032 G A ANKDD1A Missense_Mutation p.R24H 0.10 tolerated(0.09) benign(0.081) TCGA-FD-A6TG-01 15 65412264 65412264 C G PDCD7 Missense_Mutation p.E346D 0.08 deleterious(0.04) probably_damaging(0.962) TCGA-FD-A6TG-01 15 72645447 72645447 G A HEXA Missense_Mutation p.R178C 0.24 deleterious(0.02) probably_damaging(1) TCGA-FD-A6TG-01 15 79382678 79382678 C G RASGRF1 Missense_Mutation p.E55Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TG-01 15 79382697 79382697 C G RASGRF1 Missense_Mutation p.Q48H 0.09 tolerated(0.05) benign(0.358) TCGA-FD-A6TG-01 15 81572063 81572063 C G IL16 Missense_Mutation p.I343M 0.12 tolerated(0.06) benign(0.037) TCGA-FD-A6TG-01 15 83240207 83240207 A G CPEB1 Missense_Mutation p.L89P 0.07 tolerated_low_confidence(0.26) benign(0.005) TCGA-FD-A6TG-01 15 89381971 89381971 C T ACAN Missense_Mutation p.P50S 0.16 deleterious(0) unknown(0) TCGA-FD-A6TG-01 15 90378798 90378798 G A C15orf38-AP3S2 Silent p.I378I 0.09 TCGA-FD-A6TG-01 15 91352387 91352387 G A BLM Missense_Mutation p.E1258K 0.08 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TG-01 15 91461462 91461462 C A MAN2A2 Silent p.L1011L 0.12 TCGA-FD-A6TG-01 16 133069 133069 C T MPG Missense_Mutation p.P112S 0.09 tolerated(0.42) benign(0.022) TCGA-FD-A6TG-01 16 23698924 23698924 G A PLK1 Missense_Mutation p.E391K 0.10 tolerated(0.31) benign(0.001) TCGA-FD-A6TG-01 16 24801809 24801809 G C TNRC6A Missense_Mutation p.E616Q 0.08 deleterious(0) possibly_damaging(0.719) TCGA-FD-A6TG-01 16 28603059 28603060 AC - CCDC101 3'UTR 0.12 TCGA-FD-A6TG-01 16 30133296 30133296 C A MAPK3 Missense_Mutation p.V68L 0.11 deleterious(0) probably_damaging(0.917) TCGA-FD-A6TG-01 16 31131665 31131665 C T KAT8 Missense_Mutation p.R98W 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 16 3432795 3432795 G A ZSCAN32 3'UTR 0.12 TCGA-FD-A6TG-01 16 48381496 48381496 G A LONP2 Missense_Mutation p.E673K 0.15 deleterious(0) possibly_damaging(0.867) TCGA-FD-A6TG-01 16 48381562 48381562 G C LONP2 Missense_Mutation p.E695Q 0.14 deleterious(0) probably_damaging(0.914) TCGA-FD-A6TG-01 16 49672441 49672441 G T ZNF423 Missense_Mutation p.H208N 0.21 deleterious(0.01) probably_damaging(1) TCGA-FD-A6TG-01 16 55364254 55364254 G A IRX6 3'UTR 0.29 TCGA-FD-A6TG-01 16 57181449 57181449 C T CPNE2 Intron 0.26 TCGA-FD-A6TG-01 16 67877184 67877184 G C THAP11 Missense_Mutation p.D243H 0.06 deleterious(0) probably_damaging(0.969) TCGA-FD-A6TG-01 16 68010124 68010124 G A DPEP3 Nonsense_Mutation p.Q393* 0.10 TCGA-FD-A6TG-01 16 72139238 72139238 C G DHX38 Missense_Mutation p.I790M 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 16 74920261 74920261 C T WDR59 Nonsense_Mutation p.W818* 0.15 TCGA-FD-A6TG-01 16 76350369 76350369 G A CNTNAP4 Missense_Mutation p.E24K 0.15 tolerated(0.08) probably_damaging(0.93) TCGA-FD-A6TG-01 16 83816995 83816995 T A CDH13 Missense_Mutation p.N731K 0.43 tolerated(0.3) benign(0.01) TCGA-FD-A6TG-01 16 83941793 83941793 G A MLYCD Missense_Mutation p.R235K 0.17 deleterious(0.01) possibly_damaging(0.658) TCGA-FD-A6TG-01 16 84693447 84693447 G A KLHL36 Missense_Mutation p.E407K 0.31 tolerated(0.79) possibly_damaging(0.848) TCGA-FD-A6TG-01 16 85010725 85010725 G A ZDHHC7 Silent p.I279I 0.42 TCGA-FD-A6TG-01 16 8719447 8719447 C T METTL22 5'UTR 0.25 TCGA-FD-A6TG-01 16 89348908 89348908 C A ANKRD11 Nonsense_Mutation p.E1348* 0.10 TCGA-FD-A6TG-01 16 89924852 89924852 G T SPIRE2 Silent p.P403P 0.29 TCGA-FD-A6TG-01 17 10351724 10351724 C G MYH4 Missense_Mutation p.E1549Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TG-01 17 16455227 16455227 C G ZNF287 Missense_Mutation p.Q743H 0.22 tolerated(0.31) probably_damaging(0.988) TCGA-FD-A6TG-01 17 19246784 19246784 G A B9D1 Intron 0.10 TCGA-FD-A6TG-01 17 20107754 20107754 C T SPECC1 Missense_Mutation p.S131L 0.11 tolerated(0.34) benign(0.002) TCGA-FD-A6TG-01 17 26940126 26940126 C T SGK494 Silent p.V149V 0.07 TCGA-FD-A6TG-01 17 27185487 27185487 G T ERAL1 Missense_Mutation p.V232F 0.17 deleterious(0.04) benign(0.038) TCGA-FD-A6TG-01 17 27284365 27284365 C T SEZ6 Splice_Site p.X832_splice 0.23 TCGA-FD-A6TG-01 17 29206491 29206491 A T ATAD5 Missense_Mutation p.S1355C 0.09 deleterious(0) possibly_damaging(0.566) TCGA-FD-A6TG-01 17 30320997 30320997 C G SUZ12 Silent p.L469L 0.06 TCGA-FD-A6TG-01 17 30376296 30376296 C G LRRC37B Silent p.L853L 0.05 TCGA-FD-A6TG-01 17 33904370 33904370 G A PEX12 Missense_Mutation p.L123F 0.18 deleterious(0.01) benign(0.014) TCGA-FD-A6TG-01 17 36487329 36487329 C T GPR179 Missense_Mutation p.R708Q 0.11 tolerated(0.09) benign(0.132) TCGA-FD-A6TG-01 17 36522182 36522182 G C SOCS7 Missense_Mutation p.R358P 0.13 deleterious(0) possibly_damaging(0.885) TCGA-FD-A6TG-01 17 36909467 36909467 C A PSMB3 Missense_Mutation p.A23D 0.14 deleterious(0) probably_damaging(0.99) TCGA-FD-A6TG-01 17 38499089 38499089 C T RARA Intron 0.10 TCGA-FD-A6TG-01 17 39120743 39120743 G A KRT39 Missense_Mutation p.S169L 0.07 tolerated(0.63) probably_damaging(0.999) TCGA-FD-A6TG-01 17 39411743 39411743 T G KRTAP9-9 Missense_Mutation p.S36A 0.13 tolerated(0.12) unknown(0) TCGA-FD-A6TG-01 17 39846124 39846124 G A EIF1 Silent p.K42K 0.10 TCGA-FD-A6TG-01 17 40179105 40179105 C T ZNF385C Missense_Mutation p.R437H 0.06 deleterious(0.04) benign(0.021) TCGA-FD-A6TG-01 17 40278828 40278828 G A RAB5C Silent p.F193F 0.07 TCGA-FD-A6TG-01 17 40673049 40673049 G C ATP6V0A1 Missense_Mutation p.E810Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 17 40996746 40996746 C G AOC2 Missense_Mutation p.P35A 0.10 tolerated(0.11) benign(0) TCGA-FD-A6TG-01 17 42152679 42152679 C G G6PC3 Silent p.G179G 0.09 TCGA-FD-A6TG-01 17 42153181 42153181 G T G6PC3 Missense_Mutation p.A271S 0.12 tolerated(0.82) benign(0.005) TCGA-FD-A6TG-01 17 4442211 4442211 C T SPNS2 3'UTR 0.12 TCGA-FD-A6TG-01 17 45897701 45897701 G T OSBPL7 5'UTR 0.38 TCGA-FD-A6TG-01 17 51901541 51901541 C T KIF2B Nonsense_Mutation p.Q383* 0.20 TCGA-FD-A6TG-01 17 54978835 54978835 G C TRIM25 Silent p.L344L 0.09 TCGA-FD-A6TG-01 17 56570243 56570243 G T MTMR4 Nonsense_Mutation p.S1094* 0.08 TCGA-FD-A6TG-01 17 58144806 58144806 C G HEATR6 Missense_Mutation p.Q409H 0.06 deleterious(0) probably_damaging(0.946) TCGA-FD-A6TG-01 17 59760937 59760937 C G BRIP1 Missense_Mutation p.R1157T 0.18 tolerated_low_confidence(0.84) benign(0.002) TCGA-FD-A6TG-01 17 60525064 60525064 C T METTL2A Nonsense_Mutation p.Q307* 0.41 TCGA-FD-A6TG-01 17 60525120 60525120 C A METTL2A Missense_Mutation p.F325L 0.40 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TG-01 17 61972805 61972805 G T CSH1 Intron 0.12 TCGA-FD-A6TG-01 17 62254744 62254744 C G TEX2 Missense_Mutation p.E845Q 0.04 deleterious(0) possibly_damaging(0.754) TCGA-FD-A6TG-01 17 7077228 7077228 C - ASGR1 Intron 0.23 TCGA-FD-A6TG-01 17 7137512 7137512 C G DVL2 Missense_Mutation p.E24Q 0.27 deleterious(0) probably_damaging(0.987) TCGA-FD-A6TG-01 17 72588781 72588781 C T C17orf77 Missense_Mutation p.P199L 0.22 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FD-A6TG-01 17 7412382 7412382 C G POLR2A Silent p.V1195V 0.11 TCGA-FD-A6TG-01 17 76116793 76116793 G T TMC6 Missense_Mutation p.F552L 0.10 tolerated(0.48) benign(0.075) TCGA-FD-A6TG-01 17 79673992 79673992 G C SLC25A10 Silent p.L134L 0.12 TCGA-FD-A6TG-01 17 79826708 79826708 C T ARHGDIA 3'UTR 0.31 TCGA-FD-A6TG-01 17 80706838 80706838 C G FN3K Silent p.L192L 0.08 TCGA-FD-A6TG-01 18 65181723 65181723 C T DSEL Silent p.Q51Q 0.10 TCGA-FD-A6TG-01 18 7037684 7037684 C G LAMA1 Missense_Mutation p.D544H 0.10 deleterious(0.01) benign(0.438) TCGA-FD-A6TG-01 18 72346061 72346061 C G ZNF407 Missense_Mutation p.S1029C 0.07 tolerated(0.06) benign(0.011) TCGA-FD-A6TG-01 19 10394318 10394318 G A ICAM1 Missense_Mutation p.E165K 0.18 tolerated(0.13) benign(0.161) TCGA-FD-A6TG-01 19 11925256 11925256 C T ZNF440 5'UTR 0.29 TCGA-FD-A6TG-01 19 12256290 12256290 G A ZNF625 Missense_Mutation p.S314F 0.06 tolerated(0.7) possibly_damaging(0.466) TCGA-FD-A6TG-01 19 12739386 12739386 G C ZNF791 Missense_Mutation p.R348T 0.05 deleterious(0.05) probably_damaging(0.999) TCGA-FD-A6TG-01 19 12780892 12780892 G C WDR83 Missense_Mutation p.E69Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TG-01 19 15465675 15465675 G C AKAP8 3'UTR 0.14 TCGA-FD-A6TG-01 19 15918827 15918827 G A OR10H1 Silent p.S7S 0.08 TCGA-FD-A6TG-01 19 16060049 16060049 A G OR10H4 Missense_Mutation p.I78V 0.14 tolerated(0.13) benign(0.011) TCGA-FD-A6TG-01 19 18474235 18474235 T G PGPEP1 Missense_Mutation p.Y158D 0.24 deleterious(0.02) benign(0.038) TCGA-FD-A6TG-01 19 19338481 19338481 G C NCAN Missense_Mutation p.L684F 0.12 tolerated(0.71) benign(0.03) TCGA-FD-A6TG-01 19 20117401 20117401 T G ZNF682 Missense_Mutation p.K304Q 0.05 tolerated(0.1) benign(0.163) TCGA-FD-A6TG-01 19 20117670 20117670 G A ZNF682 Missense_Mutation p.S214L 0.09 deleterious(0.04) probably_damaging(0.987) TCGA-FD-A6TG-01 19 31040392 31040392 C T ZNF536 Missense_Mutation p.S1289F 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FD-A6TG-01 19 38794889 38794889 T C C19orf33 5'UTR 0.54 TCGA-FD-A6TG-01 19 38986891 38986891 G T RYR1 Silent p.P2195P 0.06 TCGA-FD-A6TG-01 19 39013889 39013889 C G RYR1 Silent p.V3460V 0.04 TCGA-FD-A6TG-01 19 40395994 40395994 C T FCGBP Missense_Mutation p.R2468H 0.43 benign(0.07) TCGA-FD-A6TG-01 19 40411879 40411879 C G FCGBP Missense_Mutation p.S1250T 0.20 benign(0.014) TCGA-FD-A6TG-01 19 40580262 40580262 G A ZNF780A 3'UTR 0.15 TCGA-FD-A6TG-01 19 43236985 43236985 C T PSG3 Silent p.R220R 0.08 TCGA-FD-A6TG-01 19 43348760 43348760 G C PSG10P RNA 0.14 TCGA-FD-A6TG-01 19 44570448 44570448 C T ZNF223 Missense_Mutation p.S156F 0.05 tolerated(0.49) benign(0.026) TCGA-FD-A6TG-01 19 44635738 44635738 G A ZNF225 Missense_Mutation p.S324N 0.12 tolerated(0.2) benign(0.002) TCGA-FD-A6TG-01 19 46974024 46974024 C - PNMAL1 Frame_Shift_Del p.G90Vfs*18 0.35 TCGA-FD-A6TG-01 19 47236332 47236332 G C STRN4 Missense_Mutation p.S234W 0.17 deleterious(0) possibly_damaging(0.908) TCGA-FD-A6TG-01 19 47658465 47658465 A G SAE1 Missense_Mutation p.K208E 0.08 tolerated(0.07) benign(0.069) TCGA-FD-A6TG-01 19 48917285 48917285 T C GRIN2D Missense_Mutation p.S375P 0.14 deleterious(0) probably_damaging(0.915) TCGA-FD-A6TG-01 19 48967859 48967859 C A KCNJ14 Missense_Mutation p.S379Y 0.19 tolerated(1) benign(0.252) TCGA-FD-A6TG-01 19 49481205 49481205 C T GYS1 Missense_Mutation p.M428I 0.20 tolerated(0.13) benign(0.087) TCGA-FD-A6TG-01 19 51518120 51518120 G A KLK10 Missense_Mutation p.P256L 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 19 52448027 52448027 C T ZNF613 Silent p.F297F 0.08 TCGA-FD-A6TG-01 19 52448815 52448815 G T ZNF613 Missense_Mutation p.R560L 0.38 deleterious(0.03) benign(0.021) TCGA-FD-A6TG-01 19 53344670 53344670 G A ZNF468 Missense_Mutation p.H293Y 0.11 deleterious(0) benign(0.371) TCGA-FD-A6TG-01 19 53432462 53432462 G A ZNF321P Silent p.I132I 0.20 TCGA-FD-A6TG-01 19 53754805 53754805 C G ZNF677 5'UTR 0.23 TCGA-FD-A6TG-01 19 55815193 55815193 A G BRSK1 Missense_Mutation p.R429G 0.10 deleterious(0.05) benign(0.152) TCGA-FD-A6TG-01 19 55831793 55831793 G T TMEM150B Silent p.I54I 0.15 TCGA-FD-A6TG-01 19 55831949 55831949 G T TMEM150B Silent p.L35L 0.12 TCGA-FD-A6TG-01 19 6707890 6707890 C T C3 Silent p.G632G 0.10 TCGA-FD-A6TG-01 19 856140 856140 G A ELANE Silent p.P260P 0.06 TCGA-FD-A6TG-01 19 9008296 9008296 G A MUC16 Missense_Mutation p.H13086Y 0.10 possibly_damaging(0.761) TCGA-FD-A6TG-01 19 9065944 9065944 C A MUC16 Missense_Mutation p.D7168Y 0.06 unknown(0) TCGA-FD-A6TG-01 1 11076994 11076994 T G TARDBP Missense_Mutation p.L111R 0.07 deleterious(0) probably_damaging(0.971) TCGA-FD-A6TG-01 1 117944891 117944891 C T MAN1A2 Missense_Mutation p.S129L 0.17 tolerated(0.35) benign(0.002) TCGA-FD-A6TG-01 1 1222280 1222280 C T SCNN1D Silent p.P348P 0.09 TCGA-FD-A6TG-01 1 12726156 12726156 C A AADACL4 Missense_Mutation p.L212I 0.06 deleterious(0.04) possibly_damaging(0.764) TCGA-FD-A6TG-01 1 12854115 12854115 G C PRAMEF1 Missense_Mutation p.W113C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TG-01 1 150280696 150280696 C A MRPS21 3'UTR 0.15 TCGA-FD-A6TG-01 1 151156814 151156814 C G VPS72 Missense_Mutation p.E181Q 0.10 tolerated(0.19) possibly_damaging(0.897) TCGA-FD-A6TG-01 1 158300624 158300624 C T CD1B Missense_Mutation p.R97Q 0.09 tolerated(0.8) benign(0.003) TCGA-FD-A6TG-01 1 158687536 158687536 C T OR6K3 Missense_Mutation p.V124I 0.10 tolerated(0.19) benign(0.005) TCGA-FD-A6TG-01 1 160097472 160097472 C T ATP1A2 Silent p.I293I 0.09 TCGA-FD-A6TG-01 1 161047385 161047385 G T PVRL4 Missense_Mutation p.F196L 0.10 tolerated_low_confidence(0.62) benign(0.103) TCGA-FD-A6TG-01 1 161049709 161049709 G C PVRL4 Nonsense_Mutation p.S37* 0.08 TCGA-FD-A6TG-01 1 161089000 161089000 G A NIT1 Missense_Mutation p.D59N 0.31 tolerated(0.19) benign(0.014) TCGA-FD-A6TG-01 1 16256117 16256117 G A SPEN Missense_Mutation p.D1128N 0.12 possibly_damaging(0.627) TCGA-FD-A6TG-01 1 167064152 167064152 G A DUSP27 Silent p.V22V 0.19 TCGA-FD-A6TG-01 1 169831939 169831939 C G SCYL3 Splice_Site p.X319_splice 0.07 TCGA-FD-A6TG-01 1 17085034 17085034 G A MST1L RNA 0.08 TCGA-FD-A6TG-01 1 173772179 173772179 G A CENPL Silent p.F341F 0.14 TCGA-FD-A6TG-01 1 175046898 175046898 T A TNN Missense_Mutation p.L115Q 0.38 deleterious(0) probably_damaging(0.988) TCGA-FD-A6TG-01 1 17552634 17552634 G A PADI1 Silent p.V211V 0.14 TCGA-FD-A6TG-01 1 17657594 17657594 G C PADI4 Missense_Mutation p.E75Q 0.25 tolerated(0.07) probably_damaging(0.968) TCGA-FD-A6TG-01 1 183617142 183617142 C G APOBEC4 Missense_Mutation p.E259Q 0.11 tolerated(0.43) benign(0.035) TCGA-FD-A6TG-01 1 196709831 196709831 T A CFH Silent p.V955V 0.07 TCGA-FD-A6TG-01 1 198678879 198678879 A T PTPRC Missense_Mutation p.K366M 0.10 tolerated(0.1) benign(0.125) TCGA-FD-A6TG-01 1 200822476 200822476 A G CAMSAP2 Missense_Mutation p.M1226V 0.10 deleterious(0) benign(0.097) TCGA-FD-A6TG-01 1 207644373 207644373 C G CR2 Silent p.L478L 0.10 TCGA-FD-A6TG-01 1 216051154 216051154 C A USH2A Missense_Mutation p.W2876L 0.11 probably_damaging(0.992) TCGA-FD-A6TG-01 1 223441986 223441986 C T SUSD4 Silent p.E131E 0.05 TCGA-FD-A6TG-01 1 226340051 226340051 C T ACBD3 Missense_Mutation p.D454N 0.09 deleterious(0.04) possibly_damaging(0.679) TCGA-FD-A6TG-01 1 231472831 231472831 G A EXOC8 Missense_Mutation p.R221W 0.07 deleterious(0) probably_damaging(0.99) TCGA-FD-A6TG-01 1 237919635 237919635 C T RYR2 Silent p.L3731L 0.11 TCGA-FD-A6TG-01 1 238053839 238053839 G - ZP4 Frame_Shift_Del p.H33Tfs*11 0.11 TCGA-FD-A6TG-01 1 23885954 23885954 G A ID3 5'UTR 0.30 TCGA-FD-A6TG-01 1 248570164 248570164 C T OR2T1 Missense_Mutation p.T290I 0.08 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 1 25944444 25944444 C T MAN1C1 Silent p.L52L 0.09 TCGA-FD-A6TG-01 1 27094470 27094470 G T ARID1A Nonsense_Mutation p.E1060* 0.11 TCGA-FD-A6TG-01 1 2938775 2938775 G A ACTRT2 Silent p.L175L 0.33 TCGA-FD-A6TG-01 1 35476394 35476394 G C ZMYM6 Missense_Mutation p.L436V 0.11 tolerated(0.11) possibly_damaging(0.672) TCGA-FD-A6TG-01 1 35885186 35885186 A G ZMYM4 Missense_Mutation p.T1519A 0.33 tolerated(0.61) benign(0.061) TCGA-FD-A6TG-01 1 36024783 36024783 G C NCDN Missense_Mutation p.E37Q 0.19 tolerated(0.16) benign(0.105) TCGA-FD-A6TG-01 1 36209127 36209127 C T CLSPN Missense_Mutation p.E991K 0.18 tolerated(0.08) benign(0.209) TCGA-FD-A6TG-01 1 39753049 39753049 C A MACF1 Missense_Mutation p.P539T 0.13 benign(0.019) TCGA-FD-A6TG-01 1 40028021 40028021 G A PABPC4 Missense_Mutation p.P579L 0.06 tolerated(0.15) benign(0.224) TCGA-FD-A6TG-01 1 40529962 40529963 - AGA CAP1 In_Frame_Ins p.K121dup 0.11 TCGA-FD-A6TG-01 1 40723922 40723922 G A ZMPSTE24 5'UTR 0.14 TCGA-FD-A6TG-01 1 40726649 40726649 G A ZMPSTE24 Missense_Mutation p.E88K 0.04 tolerated(0.39) benign(0.07) TCGA-FD-A6TG-01 1 43308795 43308795 G A ERMAP Silent p.V440V 0.11 TCGA-FD-A6TG-01 1 43786959 43786959 C A TIE1 Missense_Mutation p.L1043I 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TG-01 1 43897166 43897166 G A SZT2 Missense_Mutation p.R1630K 0.06 tolerated(0.78) benign(0.099) TCGA-FD-A6TG-01 1 46972788 46972788 G A DMBX1 Missense_Mutation p.D36N 0.12 deleterious(0.04) possibly_damaging(0.686) TCGA-FD-A6TG-01 1 50666597 50666597 G C ELAVL4 Missense_Mutation p.W300S 0.19 deleterious(0) possibly_damaging(0.551) TCGA-FD-A6TG-01 1 53676925 53676925 G A CPT2 Missense_Mutation p.E527K 0.22 deleterious(0) possibly_damaging(0.604) TCGA-FD-A6TG-01 1 6181234 6181234 C T CHD5 Missense_Mutation p.E1615K 0.26 tolerated_low_confidence(0.15) benign(0.006) TCGA-FD-A6TG-01 1 61848909 61848909 G T NFIA Missense_Mutation p.G361V 0.18 tolerated(0.06) benign(0.004) TCGA-FD-A6TG-01 1 78340674 78340674 G A FAM73A Silent p.L608L 0.09 TCGA-FD-A6TG-01 1 97250703 97250703 A G PTBP2 Missense_Mutation p.N266S 0.20 tolerated(0.05) possibly_damaging(0.806) TCGA-FD-A6TG-01 20 16359575 16359575 G T KIF16B Silent p.T1024T 0.24 TCGA-FD-A6TG-01 20 24944532 24944532 C T APMAP Missense_Mutation p.E390K 0.09 deleterious(0) probably_damaging(0.921) TCGA-FD-A6TG-01 20 25259738 25259738 G A PYGB Missense_Mutation p.E349K 0.15 deleterious(0.01) probably_damaging(1) TCGA-FD-A6TG-01 20 25443045 25443045 C A NINL Nonsense_Mutation p.E1186* 0.12 TCGA-FD-A6TG-01 20 30414739 30414739 A G MYLK2 Missense_Mutation p.K408E 0.21 deleterious(0) possibly_damaging(0.845) TCGA-FD-A6TG-01 20 31600612 31600612 C A BPIFB2 Silent p.I69I 0.07 TCGA-FD-A6TG-01 20 31811719 31811719 T C BPIFA3 Missense_Mutation p.V77A 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-FD-A6TG-01 20 33519833 33519833 C T GSS Missense_Mutation p.R313K 0.10 tolerated(0.55) benign(0.087) TCGA-FD-A6TG-01 20 34575345 34575345 G A CNBD2 Missense_Mutation p.D249N 0.14 deleterious(0.05) benign(0.379) TCGA-FD-A6TG-01 20 34832693 34832693 C T AAR2 Silent p.L278L 0.40 TCGA-FD-A6TG-01 20 3785542 3785542 C G CDC25B Silent p.L559L 0.22 TCGA-FD-A6TG-01 20 40083314 40083314 C T CHD6 Silent p.Q1024Q 0.09 TCGA-FD-A6TG-01 20 43615817 43615817 G T STK4 Missense_Mutation p.K135N 0.36 tolerated(0.05) possibly_damaging(0.728) TCGA-FD-A6TG-01 20 48461611 48461611 C A SLC9A8 Silent p.L129L 0.06 TCGA-FD-A6TG-01 20 61476960 61476960 C G TCFL5 Intron 0.23 TCGA-FD-A6TG-01 20 61513083 61513083 C T DIDO1 Missense_Mutation p.E1409K 0.09 benign(0.114) TCGA-FD-A6TG-01 20 62701844 62701844 G C TCEA2 Missense_Mutation p.E225D 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-FD-A6TG-01 21 15399892 15399892 C G AP001347.6 RNA 0.08 TCGA-FD-A6TG-01 21 31654596 31654596 G A KRTAP24-1 Nonsense_Mutation p.R219* 0.27 TCGA-FD-A6TG-01 21 38537997 38537997 C A TTC3 Missense_Mutation p.R1161S 0.07 deleterious(0.03) possibly_damaging(0.565) TCGA-FD-A6TG-01 21 43164130 43164130 C G RIPK4 Missense_Mutation p.K369N 0.09 tolerated(0.08) possibly_damaging(0.904) TCGA-FD-A6TG-01 21 43963555 43963555 G C SLC37A1 Missense_Mutation p.L191F 0.07 tolerated(0.23) probably_damaging(0.99) TCGA-FD-A6TG-01 21 47639462 47639462 C T LSS Nonsense_Mutation p.W192* 0.15 TCGA-FD-A6TG-01 21 47805793 47805793 G A PCNT Missense_Mutation p.R1120H 0.10 possibly_damaging(0.84) TCGA-FD-A6TG-01 22 18650696 18650696 G A USP18 Missense_Mutation p.D174N 0.15 deleterious(0) possibly_damaging(0.497) TCGA-FD-A6TG-01 22 21174054 21174054 C G PI4KA Missense_Mutation p.E222Q 0.12 tolerated(0.23) benign(0.192) TCGA-FD-A6TG-01 22 30776175 30776175 C T RNF215 Missense_Mutation p.R295H 0.08 tolerated(0.29) possibly_damaging(0.475) TCGA-FD-A6TG-01 22 37893175 37893175 T C CARD10 Missense_Mutation p.I600V 0.08 tolerated(1) benign(0.001) TCGA-FD-A6TG-01 22 38084981 38084981 C A NOL12 Silent p.L121L 0.09 TCGA-FD-A6TG-01 22 41215267 41215267 G A SLC25A17 5'UTR 0.12 TCGA-FD-A6TG-01 22 41551100 41551100 C T EP300 Nonsense_Mutation p.Q1082* 0.30 TCGA-FD-A6TG-01 22 42607920 42607920 C G TCF20 Missense_Mutation p.R1131T 0.04 probably_damaging(0.968) TCGA-FD-A6TG-01 22 51207240 51207240 C G RABL2B Missense_Mutation p.E227D 0.23 tolerated_low_confidence(0.16) probably_damaging(0.969) TCGA-FD-A6TG-01 2 103125378 103125378 G C SLC9A4 Missense_Mutation p.E492Q 0.10 tolerated(0.15) probably_damaging(0.998) TCGA-FD-A6TG-01 2 10582143 10582143 G C ODC1 Missense_Mutation p.S303C 0.08 deleterious(0.02) probably_damaging(0.987) TCGA-FD-A6TG-01 2 105924200 105924200 G C TGFBRAP1 Missense_Mutation p.Q187E 0.13 deleterious(0.01) possibly_damaging(0.755) TCGA-FD-A6TG-01 2 113420665 113420665 G T SLC20A1 3'UTR 0.11 TCGA-FD-A6TG-01 2 131883458 131883458 G A PLEKHB2 Missense_Mutation p.R57H 0.08 deleterious(0.03) benign(0.189) TCGA-FD-A6TG-01 2 132288319 132288319 G A CCDC74A Missense_Mutation p.G155S 0.09 tolerated(0.81) benign(0.03) TCGA-FD-A6TG-01 2 135028042 135028042 C T MGAT5 Silent p.V109V 0.11 TCGA-FD-A6TG-01 2 136511812 136511812 G C UBXN4 Missense_Mutation p.D100H 0.10 deleterious(0.01) possibly_damaging(0.572) TCGA-FD-A6TG-01 2 141232779 141232779 T A LRP1B Missense_Mutation p.N3185Y 0.15 possibly_damaging(0.703) TCGA-FD-A6TG-01 2 145155972 145155972 G T ZEB2 Missense_Mutation p.Q928K 0.21 tolerated(0.27) benign(0.444) TCGA-FD-A6TG-01 2 149226733 149226733 C G MBD5 Silent p.L407L 0.22 TCGA-FD-A6TG-01 2 149226767 149226767 C A MBD5 Missense_Mutation p.H419N 0.19 deleterious(0) benign(0.216) TCGA-FD-A6TG-01 2 149227035 149227035 C G MBD5 Missense_Mutation p.P508R 0.11 deleterious(0) possibly_damaging(0.904) TCGA-FD-A6TG-01 2 160035546 160035546 G T TANC1 Missense_Mutation p.R794S 0.22 deleterious(0) possibly_damaging(0.611) TCGA-FD-A6TG-01 2 160261386 160261386 C G BAZ2B Missense_Mutation p.E936Q 0.12 probably_damaging(0.998) TCGA-FD-A6TG-01 2 160840445 160840445 A T PLA2R1 Missense_Mutation p.F726Y 0.16 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 2 162081151 162081151 A G TANK Missense_Mutation p.I138M 0.14 tolerated(0.32) possibly_damaging(0.794) TCGA-FD-A6TG-01 2 168115729 168115729 C T XIRP2 3'UTR 0.12 TCGA-FD-A6TG-01 2 169938198 169938198 G A DHRS9 Missense_Mutation p.G36E 0.23 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 2 173883403 173883403 C A RAPGEF4 Nonsense_Mutation p.C676* 0.13 TCGA-FD-A6TG-01 2 179392357 179392357 G A TTN Silent p.F35832F 0.19 TCGA-FD-A6TG-01 2 179396343 179396343 T A TTN Missense_Mutation p.E35000V 0.41 TCGA-FD-A6TG-01 2 179428008 179428008 C G TTN Missense_Mutation p.W27617C 0.21 TCGA-FD-A6TG-01 2 179590330 179590330 G A TTN Silent p.A6867A 0.15 TCGA-FD-A6TG-01 2 179598167 179598167 C T TTN Missense_Mutation p.A5285T 0.25 TCGA-FD-A6TG-01 2 182403901 182403901 C T CERKL Missense_Mutation p.E512K 0.14 tolerated(0.56) benign(0.028) TCGA-FD-A6TG-01 2 182543011 182543011 G A NEUROD1 Missense_Mutation p.R193W 0.11 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TG-01 2 192922462 192922462 G T TMEFF2 Missense_Mutation p.S160Y 0.09 deleterious(0) possibly_damaging(0.77) TCGA-FD-A6TG-01 2 196746635 196746635 T C DNAH7 Missense_Mutation p.I1949V 0.28 deleterious(0.01) possibly_damaging(0.458) TCGA-FD-A6TG-01 2 21232767 21232767 T A APOB Missense_Mutation p.I2325F 0.16 possibly_damaging(0.454) TCGA-FD-A6TG-01 2 215862508 215862508 G A ABCA12 Missense_Mutation p.L1069F 0.15 tolerated(0.78) benign(0.077) TCGA-FD-A6TG-01 2 217124269 217124269 G T MARCH4 Missense_Mutation p.N333K 0.41 tolerated(0.4) possibly_damaging(0.713) TCGA-FD-A6TG-01 2 234879064 234879064 G C TRPM8 Silent p.V783V 0.14 TCGA-FD-A6TG-01 2 235404534 235404534 C G ARL4C 3'UTR 0.28 TCGA-FD-A6TG-01 2 27373035 27373035 C A TCF23 Silent p.V89V 0.07 TCGA-FD-A6TG-01 2 27552143 27552143 G T GTF3C2 Missense_Mutation p.F628L 0.05 tolerated(0.49) probably_damaging(0.969) TCGA-FD-A6TG-01 2 44139644 44139644 C T LRPPRC Missense_Mutation p.E1068K 0.12 tolerated(0.8) benign(0.002) TCGA-FD-A6TG-01 2 50780079 50780079 C A NRXN1 Missense_Mutation p.V509L 0.19 tolerated(1) benign(0.028) TCGA-FD-A6TG-01 2 56149583 56149583 C G EFEMP1 Splice_Site 0.09 TCGA-FD-A6TG-01 2 69092837 69092837 A G BMP10 Missense_Mutation p.Y401H 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 2 74760767 74760767 C T LOXL3 Missense_Mutation p.R743H 0.06 tolerated(0.88) benign(0.001) TCGA-FD-A6TG-01 2 85839108 85839108 C G C2orf68 5'UTR 0.15 TCGA-FD-A6TG-01 2 86832387 86832387 G A RNF103 Missense_Mutation p.R213W 0.07 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 2 97427541 97427541 C G CNNM4 Missense_Mutation p.L269V 0.08 tolerated(0.28) benign(0.012) TCGA-FD-A6TG-01 3 100413656 100413656 G C GPR128 Missense_Mutation p.L735F 0.08 tolerated(0.42) benign(0.139) TCGA-FD-A6TG-01 3 10070317 10070317 T G FANCD2 5'UTR 0.06 TCGA-FD-A6TG-01 3 109128857 109128857 G T RP11-702L6.4 RNA 0.33 TCGA-FD-A6TG-01 3 111775979 111775979 G A TMPRSS7 Splice_Site p.X311_splice 0.27 TCGA-FD-A6TG-01 3 136323193 136323193 G C STAG1 Silent p.V85V 0.06 TCGA-FD-A6TG-01 3 147128093 147128093 C T ZIC1 Missense_Mutation p.T65M 0.12 deleterious(0.02) possibly_damaging(0.678) TCGA-FD-A6TG-01 3 149678547 149678547 G C RNF13 Missense_Mutation p.D268H 0.11 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 3 154010428 154010428 G A DHX36 Missense_Mutation p.H576Y 0.04 deleterious(0.03) possibly_damaging(0.699) TCGA-FD-A6TG-01 3 156396142 156396142 C T TIPARP Missense_Mutation p.S219F 0.08 deleterious(0) probably_damaging(0.986) TCGA-FD-A6TG-01 3 164906171 164906171 C T SLITRK3 Silent p.K816K 0.19 TCGA-FD-A6TG-01 3 183382715 183382715 G C KLHL24 Missense_Mutation p.R371T 0.10 tolerated(0.05) benign(0.369) TCGA-FD-A6TG-01 3 184035179 184035179 G A EIF4G1 Missense_Mutation p.R80H 0.25 deleterious(0.04) probably_damaging(0.988) TCGA-FD-A6TG-01 3 184039489 184039489 G C EIF4G1 Missense_Mutation p.E380Q 0.37 tolerated(0.29) probably_damaging(0.977) TCGA-FD-A6TG-01 3 184040478 184040478 G C EIF4G1 Missense_Mutation p.E592D 0.45 deleterious(0.03) possibly_damaging(0.625) TCGA-FD-A6TG-01 3 18456659 18456659 C T SATB1 Missense_Mutation p.D195N 0.08 deleterious(0.01) benign(0.288) TCGA-FD-A6TG-01 3 196746438 196746438 C A MFI2 Intron 0.12 TCGA-FD-A6TG-01 3 197640778 197640778 C G IQCG Missense_Mutation p.E288Q 0.06 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TG-01 3 38938705 38938705 G C SCN11A Missense_Mutation p.F678L 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-FD-A6TG-01 3 43591256 43591256 G A ANO10 Missense_Mutation p.P585S 0.07 tolerated(0.17) benign(0.012) TCGA-FD-A6TG-01 3 48510489 48510489 G A SHISA5 3'UTR 0.18 TCGA-FD-A6TG-01 3 52245381 52245381 C T ALAS1 Silent p.F471F 0.21 TCGA-FD-A6TG-01 3 52245469 52245469 C T ALAS1 Missense_Mutation p.R501C 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 3 52245498 52245498 C A ALAS1 Silent p.L510L 0.13 TCGA-FD-A6TG-01 3 52558548 52558548 C G NT5DC2 Missense_Mutation p.D538H 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-FD-A6TG-01 3 62258752 62258752 C A PTPRG Missense_Mutation p.T1105N 0.25 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TG-01 3 77623778 77623778 C T ROBO2 Silent p.V716V 0.29 TCGA-FD-A6TG-01 3 78685105 78685105 A C ROBO1 Missense_Mutation p.V1064G 0.05 tolerated(0.05) possibly_damaging(0.713) TCGA-FD-A6TG-01 3 89259357 89259357 G A EPHA3 Silent p.E167E 0.19 TCGA-FD-A6TG-01 3 89480500 89480500 T C EPHA3 Silent p.Y779Y 0.18 TCGA-FD-A6TG-01 4 120192858 120192858 A T USP53 Missense_Mutation p.N615Y 0.29 deleterious(0) benign(0.379) TCGA-FD-A6TG-01 4 124235190 124235190 C G SPATA5 Missense_Mutation p.Q885E 0.35 tolerated(0.05) possibly_damaging(0.489) TCGA-FD-A6TG-01 4 155528028 155528028 C T FGG Missense_Mutation p.D320N 0.13 tolerated(0.18) benign(0.067) TCGA-FD-A6TG-01 4 158257876 158257876 G A GRIA2 Silent p.Q607Q 0.18 TCGA-FD-A6TG-01 4 17805811 17805811 C T DCAF16 5'UTR 0.21 TCGA-FD-A6TG-01 4 2272527 2272527 C T ZFYVE28 Silent p.V863V 0.16 TCGA-FD-A6TG-01 4 30921945 30921945 G C PCDH7 Missense_Mutation p.R1115S 0.21 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TG-01 4 40427941 40427941 C T RBM47 Missense_Mutation p.D588N 0.31 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-FD-A6TG-01 4 47788889 47788889 C T CORIN Missense_Mutation p.D88N 0.29 tolerated_low_confidence(0.18) benign(0.039) TCGA-FD-A6TG-01 4 55592111 55592111 G C KIT Missense_Mutation p.D479H 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-FD-A6TG-01 4 66467464 66467464 C T EPHA5 Missense_Mutation p.D269N 0.10 tolerated(0.3) benign(0.08) TCGA-FD-A6TG-01 4 69817286 69817286 C A UGT2A3 Missense_Mutation p.D65Y 0.38 deleterious(0.01) probably_damaging(0.95) TCGA-FD-A6TG-01 4 74735435 74735435 G A CXCL1 Silent p.Q50Q 0.15 TCGA-FD-A6TG-01 4 83411350 83411350 C T TMEM150C Silent p.L135L 0.07 TCGA-FD-A6TG-01 4 887700 887700 G A GAK Missense_Mutation p.P280L 0.17 tolerated(0.19) benign(0.009) TCGA-FD-A6TG-01 5 112179676 112179676 A G APC Silent p.A2795A 0.24 TCGA-FD-A6TG-01 5 120021873 120021873 G T PRR16 Missense_Mutation p.R105S 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FD-A6TG-01 5 13894899 13894899 G C DNAH5 Nonsense_Mutation p.S764* 0.10 TCGA-FD-A6TG-01 5 140176615 140176615 C G PCDHA2 Nonsense_Mutation p.S689* 0.18 TCGA-FD-A6TG-01 5 140216029 140216029 A T PCDHA7 Silent p.A687A 0.15 TCGA-FD-A6TG-01 5 140255517 140255517 C G PCDHA12 Missense_Mutation p.L154V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-FD-A6TG-01 5 140516511 140516511 C T PCDHB5 Missense_Mutation p.L499F 0.11 deleterious_low_confidence(0.01) benign(0.038) TCGA-FD-A6TG-01 5 140516513 140516513 C A PCDHB5 Silent p.L499L 0.11 TCGA-FD-A6TG-01 5 140531692 140531692 C T PCDHB6 Silent p.H618H 0.10 TCGA-FD-A6TG-01 5 140712348 140712348 G T PCDHGA1 Silent p.A699A 0.09 TCGA-FD-A6TG-01 5 140768432 140768432 G A PCDHGB4 Silent p.A327A 0.15 TCGA-FD-A6TG-01 5 145895250 145895250 G A GPR151 Missense_Mutation p.P143S 0.10 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 5 148620285 148620285 G C ABLIM3 Silent p.V417V 0.13 TCGA-FD-A6TG-01 5 150946377 150946377 G C FAT2 Missense_Mutation p.Q706E 0.10 benign(0.044) TCGA-FD-A6TG-01 5 32415272 32415272 G C ZFR Missense_Mutation p.Q196E 0.10 tolerated(0.1) benign(0.042) TCGA-FD-A6TG-01 5 33951543 33951543 G T SLC45A2 Intron 0.11 TCGA-FD-A6TG-01 5 36137545 36137545 T C LMBRD2 Splice_Site p.X123_splice 0.26 TCGA-FD-A6TG-01 5 39308335 39308335 C A C9 Missense_Mutation p.A413S 0.12 tolerated(0.86) benign(0.014) TCGA-FD-A6TG-01 5 50055509 50055509 G A PARP8 Missense_Mutation p.E73K 0.12 deleterious_low_confidence(0.03) benign(0.285) TCGA-FD-A6TG-01 5 76627261 76627261 C G PDE8B Missense_Mutation p.L229V 0.09 deleterious(0) probably_damaging(0.927) TCGA-FD-A6TG-01 5 82937299 82937299 C G HAPLN1 3'UTR 0.08 TCGA-FD-A6TG-01 5 83680218 83680218 G A EDIL3 5'UTR 0.16 TCGA-FD-A6TG-01 5 95728642 95728642 C G PCSK1 3'UTR 0.13 TCGA-FD-A6TG-01 6 10398935 10398935 C G TFAP2A Missense_Mutation p.Q343H 0.06 deleterious(0) probably_damaging(0.938) TCGA-FD-A6TG-01 6 10796228 10796228 C T MAK Intron 0.12 TCGA-FD-A6TG-01 6 108372381 108372381 G C OSTM1 Missense_Mutation p.Q213E 0.16 tolerated(0.53) benign(0.122) TCGA-FD-A6TG-01 6 11190924 11190924 G A NEDD9 Missense_Mutation p.S393L 0.10 tolerated(0.13) probably_damaging(0.916) TCGA-FD-A6TG-01 6 123318904 123318904 C T CLVS2 5'UTR 0.21 TCGA-FD-A6TG-01 6 143458088 143458088 G A AIG1 Silent p.R86R 0.08 TCGA-FD-A6TG-01 6 157529055 157529055 G T ARID1B 3'UTR 0.06 TCGA-FD-A6TG-01 6 16290802 16290802 G T GMPR Missense_Mutation p.M269I 0.06 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 6 24701866 24701866 G C ACOT13 3'UTR 0.09 TCGA-FD-A6TG-01 6 25777223 25777223 C G SLC17A4 Intron 0.06 TCGA-FD-A6TG-01 6 26250414 26250414 C A HIST1H3F 3'UTR 0.12 TCGA-FD-A6TG-01 6 348123 348123 G A DUSP22 Missense_Mutation p.S95N 0.04 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 6 52761523 52761523 C A GSTA3 3'UTR 0.35 TCGA-FD-A6TG-01 6 56357035 56357035 C T DST Missense_Mutation p.R4293K 0.09 probably_damaging(0.997) TCGA-FD-A6TG-01 6 7583361 7583361 G C DSP Missense_Mutation p.E1956Q 0.11 possibly_damaging(0.905) TCGA-FD-A6TG-01 6 75887496 75887496 G A COL12A1 Nonsense_Mutation p.Q774* 0.14 TCGA-FD-A6TG-01 6 75953496 75953496 C A COX7A2 Silent p.S17S 0.11 TCGA-FD-A6TG-01 6 76376580 76376580 C G SENP6 Missense_Mutation p.R383G 0.06 tolerated(0.08) benign(0.085) TCGA-FD-A6TG-01 7 105122848 105122848 C G PUS7 Missense_Mutation p.L320F 0.06 deleterious(0.05) probably_damaging(0.999) TCGA-FD-A6TG-01 7 105206037 105206037 C T EFCAB10 Missense_Mutation p.E137K 0.19 tolerated_low_confidence(0.13) possibly_damaging(0.807) TCGA-FD-A6TG-01 7 130080830 130080830 C A CEP41 5'UTR 0.07 TCGA-FD-A6TG-01 7 134618740 134618740 A G CALD1 Missense_Mutation p.E407G 0.14 tolerated_low_confidence(0.33) unknown(0) TCGA-FD-A6TG-01 7 135320370 135320370 C T NUP205 Silent p.L1701L 0.10 TCGA-FD-A6TG-01 7 148481098 148481098 C T CUL1 Silent p.T409T 0.10 TCGA-FD-A6TG-01 7 150754191 150754191 G C CDK5 Missense_Mutation p.L32V 0.07 deleterious(0) possibly_damaging(0.8) TCGA-FD-A6TG-01 7 20180732 20180732 T C MACC1 Missense_Mutation p.Y799C 0.70 deleterious(0.01) probably_damaging(0.94) TCGA-FD-A6TG-01 7 20762675 20762675 G A ABCB5 Missense_Mutation p.A820T 0.10 tolerated(0.19) benign(0.008) TCGA-FD-A6TG-01 7 21628979 21628979 C T DNAH11 Silent p.F709F 0.05 TCGA-FD-A6TG-01 7 21892169 21892169 G A DNAH11 Missense_Mutation p.E3668K 0.05 benign(0.287) TCGA-FD-A6TG-01 7 21932042 21932042 G C DNAH11 Splice_Site p.X4177_splice 0.03 TCGA-FD-A6TG-01 7 21942680 21942680 T C CDCA7L Missense_Mutation p.K417R 0.70 tolerated(0.89) benign(0.026) TCGA-FD-A6TG-01 7 29126138 29126138 G C CPVL Missense_Mutation p.P191A 0.14 deleterious(0.03) possibly_damaging(0.832) TCGA-FD-A6TG-01 7 31793087 31793087 C T PDE1C Missense_Mutation p.D741N 0.09 deleterious_low_confidence(0.01) benign(0.156) TCGA-FD-A6TG-01 7 44046895 44046895 G A SPDYE1 Missense_Mutation p.D221N 0.13 tolerated(1) benign(0.044) TCGA-FD-A6TG-01 7 44286782 44286782 G A CAMK2B Silent p.I117I 0.15 TCGA-FD-A6TG-01 7 5340173 5340173 C T SLC29A4 Missense_Mutation p.R444C 0.05 deleterious(0.03) possibly_damaging(0.892) TCGA-FD-A6TG-01 7 55224580 55224580 G C EGFR Intron 0.21 TCGA-FD-A6TG-01 7 57528958 57528958 C A ZNF716 Missense_Mutation p.T264N 0.15 deleterious(0.02) possibly_damaging(0.5) TCGA-FD-A6TG-01 7 6449925 6449925 C A DAGLB Missense_Mutation p.Q552H 0.39 tolerated(0.12) benign(0.006) TCGA-FD-A6TG-01 7 64852854 64852854 C G ZNF92 Missense_Mutation p.L15V 0.08 tolerated(0.13) probably_damaging(0.994) TCGA-FD-A6TG-01 7 72657569 72657569 A G GTF2IRD2P1 RNA 0.20 TCGA-FD-A6TG-01 7 73275563 73275563 G A WBSCR28 Silent p.G13G 0.28 TCGA-FD-A6TG-01 7 73279451 73279451 A G WBSCR28 Silent p.G67G 0.06 TCGA-FD-A6TG-01 7 73636008 73636008 C T LAT2 Missense_Mutation p.S125L 0.09 tolerated(0.68) benign(0.001) TCGA-FD-A6TG-01 7 82595458 82595458 C A PCLO Nonsense_Mutation p.E1216* 0.07 TCGA-FD-A6TG-01 7 84694841 84694841 G A SEMA3D Missense_Mutation p.S206F 0.18 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 7 86415769 86415769 G T GRM3 Missense_Mutation p.D221Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TG-01 7 938872 938872 G T ADAP1 Missense_Mutation p.F298L 0.22 deleterious(0.03) probably_damaging(0.997) TCGA-FD-A6TG-01 8 105105754 105105754 C T RIMS2 Intron 0.07 TCGA-FD-A6TG-01 8 144994931 144994931 G A PLEC Missense_Mutation p.L3157F 0.20 probably_damaging(1) TCGA-FD-A6TG-01 8 146156039 146156039 T A ZNF16 3'UTR 0.26 TCGA-FD-A6TG-01 8 27320929 27320929 A G CHRNA2 Missense_Mutation p.V344A 0.13 deleterious(0.03) possibly_damaging(0.839) TCGA-FD-A6TG-01 8 53569921 53569921 C G RB1CC1 Missense_Mutation p.R823T 0.06 deleterious_low_confidence(0) benign(0.126) TCGA-FD-A6TG-01 8 56986298 56986298 C G RPS20 Missense_Mutation p.E45Q 0.40 tolerated(0.07) benign(0.403) TCGA-FD-A6TG-01 8 57079000 57079000 T C PLAG1 Silent p.L435L 0.45 TCGA-FD-A6TG-01 8 59514019 59514019 A G NSMAF Missense_Mutation p.Y432H 0.26 deleterious(0) probably_damaging(1) TCGA-FD-A6TG-01 8 69017493 69017493 C A PREX2 Intron 0.06 TCGA-FD-A6TG-01 8 71499408 71499408 C T TRAM1 Missense_Mutation p.D192N 0.08 deleterious(0) probably_damaging(0.991) TCGA-FD-A6TG-01 8 77768131 77768131 G T ZFHX4 Missense_Mutation p.G2992W 0.13 probably_damaging(0.999) TCGA-FD-A6TG-01 9 106875681 106875681 G C SMC2 Missense_Mutation p.D447H 0.14 deleterious(0.01) possibly_damaging(0.531) TCGA-FD-A6TG-01 9 131735482 131735482 C G NUP188 Missense_Mutation p.S386C 0.14 tolerated(0.12) benign(0.207) TCGA-FD-A6TG-01 9 135205790 135205790 G C SETX Missense_Mutation p.Q399E 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-FD-A6TG-01 9 138011649 138011649 G A OLFM1 Silent p.E343E 0.21 TCGA-FD-A6TG-01 9 139100759 139100759 C T QSOX2 Missense_Mutation p.G638R 0.16 tolerated(0.13) benign(0.01) TCGA-FD-A6TG-01 9 15777607 15777607 C G CCDC171 Missense_Mutation p.S894C 0.21 tolerated(0.07) probably_damaging(0.994) TCGA-FD-A6TG-01 9 18777079 18777079 C T ADAMTSL1 Missense_Mutation p.P951L 0.17 deleterious(0.01) probably_damaging(0.953) TCGA-FD-A6TG-01 X 100086638 100086638 G A CSTF2 Missense_Mutation p.E342K 0.12 deleterious(0.01) benign(0.294) TCGA-FD-A6TG-01 X 123779049 123779049 C A TENM1 Missense_Mutation p.C607F 0.35 deleterious(0) probably_damaging(0.95) TCGA-FD-A6TG-01 X 140985204 140985204 A G MAGEC3 Missense_Mutation p.S554G 0.23 tolerated(1) benign(0.193) TCGA-FD-A6TG-01 X 140993442 140993442 G A MAGEC1 Silent p.Q84Q 0.24 TCGA-FD-A6TG-01 X 140995819 140995819 G A MAGEC1 Missense_Mutation p.E877K 0.40 deleterious(0) unknown(0) TCGA-FD-A6TG-01 X 140996207 140996207 T C MAGEC1 Missense_Mutation p.I1006T 0.31 deleterious(0.01) unknown(0) TCGA-FD-A6TG-01 X 1522398 1522398 G C ASMTL Intron 0.09 TCGA-FD-A6TG-01 X 153713947 153713947 G C UBL4A Missense_Mutation p.I135M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TG-01 X 153714279 153714279 G C UBL4A Missense_Mutation p.S65C 0.12 deleterious(0) probably_damaging(0.941) TCGA-FD-A6TG-01 X 18919674 18919674 C A PHKA2 Nonsense_Mutation p.E986* 0.12 TCGA-FD-A6TG-01 X 26212474 26212474 G A MAGEB6 Missense_Mutation p.E171K 0.25 tolerated(1) benign(0) TCGA-FD-A6TG-01 X 32361363 32361363 G A DMD Missense_Mutation p.S1876F 0.07 possibly_damaging(0.683) TCGA-FD-A6TG-01 X 50054340 50054340 A T CCNB3 Silent p.P1057P 0.38 TCGA-FD-A6TG-01 X 54566599 54566599 C T GNL3L Missense_Mutation p.S38F 0.24 tolerated(0.09) benign(0.002) TCGA-FD-A6TG-01 X 55286994 55286994 G A PAGE3 Silent p.L98L 0.26 TCGA-FD-A6TG-01 X 83128696 83128696 A G CYLC1 Missense_Mutation p.K327R 0.48 tolerated(0.08) unknown(0) TCGA-FD-A6TG-01 X 96140110 96140110 C T RPA4 3'UTR 0.80 TCGA-FD-A6TH-01 10 102266078 102266078 C G SEC31B Missense_Mutation p.E294D 0.24 deleterious(0.02) benign(0.039) TCGA-FD-A6TH-01 10 102678153 102678153 C T FAM178A Missense_Mutation p.L310F 0.26 tolerated(0.26) benign(0.035) TCGA-FD-A6TH-01 10 124742896 124742896 G A PSTK Missense_Mutation p.G206E 0.21 tolerated(0.4) benign(0.005) TCGA-FD-A6TH-01 10 132891523 132891523 G A TCERG1L Nonsense_Mutation p.Q555* 0.07 TCGA-FD-A6TH-01 10 15014541 15014541 G A MEIG1 Silent p.V56V 0.18 TCGA-FD-A6TH-01 10 21104628 21104628 G T NEBL Missense_Mutation p.L723M 0.24 tolerated(0.3) benign(0.039) TCGA-FD-A6TH-01 10 27332385 27332385 G A ANKRD26 Missense_Mutation p.L711F 0.16 deleterious(0) probably_damaging(0.931) TCGA-FD-A6TH-01 10 75148091 75148091 G A ANXA7 Missense_Mutation p.R195C 0.59 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TH-01 10 89505749 89505749 T G PAPSS2 3'UTR 0.15 TCGA-FD-A6TH-01 10 93904761 93904761 C T CPEB3 Missense_Mutation p.R435Q 0.28 deleterious(0.03) possibly_damaging(0.768) TCGA-FD-A6TH-01 10 97917162 97917162 G C ZNF518A RNA 0.17 TCGA-FD-A6TH-01 11 102650261 102650261 C G MMP10 Missense_Mutation p.K107N 0.13 deleterious(0) probably_damaging(0.974) TCGA-FD-A6TH-01 11 111593458 111593458 G A SIK2 Missense_Mutation p.E709K 0.23 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TH-01 11 118390508 118390508 G A KMT2A Splice_Site p.X3774_splice 0.19 TCGA-FD-A6TH-01 11 118516310 118516310 A G PHLDB1 Missense_Mutation p.M1120V 0.15 tolerated(0.07) benign(0.003) TCGA-FD-A6TH-01 11 126176557 126176557 G A DCPS Silent p.L98L 0.20 TCGA-FD-A6TH-01 11 129827696 129827696 G A PRDM10 Missense_Mutation p.S60L 0.18 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-FD-A6TH-01 11 17483288 17483288 C T ABCC8 Missense_Mutation p.V222M 0.50 deleterious(0) probably_damaging(0.987) TCGA-FD-A6TH-01 11 20114668 20114668 G A NAV2 Missense_Mutation p.E2006K 0.45 tolerated(0.08) benign(0.196) TCGA-FD-A6TH-01 11 20676310 20676310 C G SLC6A5 Missense_Mutation p.Q764E 0.71 tolerated(0.48) benign(0.002) TCGA-FD-A6TH-01 11 4598944 4598944 C T C11orf40 Missense_Mutation p.R36K 0.34 tolerated_low_confidence(1) benign(0.14) TCGA-FD-A6TH-01 11 5221503 5221503 G A OR51V1 Missense_Mutation p.S143F 0.81 deleterious(0.01) probably_damaging(0.981) TCGA-FD-A6TH-01 11 55652912 55652912 C G TRIM51 Missense_Mutation p.S3C 0.22 deleterious(0.01) probably_damaging(0.95) TCGA-FD-A6TH-01 11 55872938 55872938 C G OR8H2 Silent p.L140L 0.19 TCGA-FD-A6TH-01 11 57263563 57263563 C T SLC43A1 Silent p.L211L 0.27 TCGA-FD-A6TH-01 11 64822077 64822077 C T NAALADL1 Missense_Mutation p.R246Q 0.29 deleterious(0) probably_damaging(0.992) TCGA-FD-A6TH-01 11 68700793 68700793 G A IGHMBP2 Missense_Mutation p.S421N 0.32 deleterious(0) possibly_damaging(0.876) TCGA-FD-A6TH-01 11 92616138 92616138 C G FAT3 Missense_Mutation p.F4172L 0.37 benign(0.141) TCGA-FD-A6TH-01 12 133733169 133733169 C T ZNF10 Missense_Mutation p.S446F 0.27 deleterious(0) probably_damaging(0.99) TCGA-FD-A6TH-01 12 43824252 43824252 C T ADAMTS20 Missense_Mutation p.G1095E 0.71 deleterious(0) probably_damaging(1) TCGA-FD-A6TH-01 12 4737466 4737466 C T AKAP3 Missense_Mutation p.R201K 0.29 tolerated(0.32) benign(0.143) TCGA-FD-A6TH-01 12 49426373 49426373 C T KMT2D Missense_Mutation p.E4039K 0.37 unknown(0) TCGA-FD-A6TH-01 12 53824975 53824975 G A AMHR2 Silent p.L480L 0.34 TCGA-FD-A6TH-01 12 6058981 6058981 C G VWF Missense_Mutation p.E2742Q 0.25 tolerated(0.1) benign(0.001) TCGA-FD-A6TH-01 12 76844766 76844766 C T OSBPL8 Missense_Mutation p.V28I 0.75 tolerated_low_confidence(0.15) benign(0.003) TCGA-FD-A6TH-01 12 77421785 77421785 G A E2F7 Missense_Mutation p.S673F 0.52 tolerated(0.7) benign(0.06) TCGA-FD-A6TH-01 13 37015267 37015267 C T CCNA1 Silent p.L371L 0.25 TCGA-FD-A6TH-01 13 39261679 39261679 C T FREM2 Silent p.V66V 0.29 TCGA-FD-A6TH-01 13 49037940 49037950 CATACAAGGAT - RB1 Frame_Shift_Del p.Y728Sfs*19 0.65 TCGA-FD-A6TH-01 14 100593087 100593087 G A EVL Missense_Mutation p.E156K 0.51 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TH-01 14 21359969 21359969 C A RNASE3 Missense_Mutation p.H42N 0.26 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TH-01 14 23303385 23303385 G A MRPL52 Missense_Mutation p.R76Q 0.12 tolerated(0.05) benign(0.417) TCGA-FD-A6TH-01 14 23354141 23354141 G A REM2 Missense_Mutation p.G121E 0.17 deleterious(0) probably_damaging(1) TCGA-FD-A6TH-01 15 25492503 25492503 G C SNORD115-42 RNA 0.23 TCGA-FD-A6TH-01 15 30011021 30011021 G A TJP1 Nonsense_Mutation p.Q1109* 0.25 TCGA-FD-A6TH-01 15 40590830 40590830 G C PLCB2 Silent p.L310L 0.22 TCGA-FD-A6TH-01 15 75562445 75562445 G C GOLGA6C Missense_Mutation p.E663Q 0.11 tolerated(0.09) benign(0.322) TCGA-FD-A6TH-01 15 86123641 86123641 C T AKAP13 Missense_Mutation p.S781L 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-FD-A6TH-01 16 19475149 19475149 C T TMC5 Silent p.L430L 0.50 TCGA-FD-A6TH-01 16 29857275 29857275 G C MVP Missense_Mutation p.E705Q 0.18 tolerated(0.14) benign(0.003) TCGA-FD-A6TH-01 16 30507528 30507528 C T ITGAL Silent p.D538D 0.52 TCGA-FD-A6TH-01 16 31477341 31477341 G A ARMC5 Intron 0.57 TCGA-FD-A6TH-01 16 50106602 50106602 A G HEATR3 Missense_Mutation p.N200S 0.20 tolerated(0.18) benign(0.004) TCGA-FD-A6TH-01 16 67318244 67318244 C A PLEKHG4 Missense_Mutation p.P526T 0.33 tolerated(0.44) benign(0.003) TCGA-FD-A6TH-01 16 67432126 67432126 G A ZDHHC1 Missense_Mutation p.R306W 0.07 deleterious(0) possibly_damaging(0.613) TCGA-FD-A6TH-01 16 87448968 87448968 C T ZCCHC14 Silent p.L326L 0.34 TCGA-FD-A6TH-01 17 36508816 36508816 G A SOCS7 Missense_Mutation p.G230E 0.64 tolerated_low_confidence(0.22) possibly_damaging(0.468) TCGA-FD-A6TH-01 17 3664707 3664707 G A ITGAE Silent p.F141F 0.19 TCGA-FD-A6TH-01 17 37826297 37826297 G A PNMT Silent p.G168G 0.20 TCGA-FD-A6TH-01 17 37873843 37873843 G T ERBB2 Intron 0.42 TCGA-FD-A6TH-01 17 40270320 40270320 C T KAT2A Missense_Mutation p.R392Q 0.40 tolerated(0.41) benign(0.003) TCGA-FD-A6TH-01 17 4851678 4851678 C G PFN1 Missense_Mutation p.W4C 0.31 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TH-01 17 6023998 6023998 C T WSCD1 3'UTR 0.41 TCGA-FD-A6TH-01 17 62532807 62532807 G T CEP95 Nonsense_Mutation p.E720* 0.17 TCGA-FD-A6TH-01 17 7150405 7150405 G A CTDNEP1 Missense_Mutation p.T89M 0.16 tolerated(0.06) possibly_damaging(0.719) TCGA-FD-A6TH-01 17 74387263 74387263 C T UBE2O Missense_Mutation p.D1214N 0.44 tolerated_low_confidence(0.21) probably_damaging(0.951) TCGA-FD-A6TH-01 17 74722527 74722527 C G JMJD6 Missense_Mutation p.E11Q 0.12 tolerated(0.12) benign(0.067) TCGA-FD-A6TH-01 18 12262872 12262872 G C CIDEA Silent p.P29P 0.41 TCGA-FD-A6TH-01 18 14478640 14478640 C A CXADRP3 RNA 0.30 TCGA-FD-A6TH-01 18 47375962 47375962 G A MYO5B Silent p.Y1430Y 0.32 TCGA-FD-A6TH-01 18 61570591 61570591 C G SERPINB2 3'UTR 0.15 TCGA-FD-A6TH-01 18 67992725 67992725 T G SOCS6 Missense_Mutation p.V274G 0.52 tolerated_low_confidence(0.12) benign(0) TCGA-FD-A6TH-01 19 14519944 14519944 G A DDX39A Missense_Mutation p.S391F 0.44 deleterious(0) benign(0.286) TCGA-FD-A6TH-01 19 18376161 18376161 T G KIAA1683 Missense_Mutation p.Q730P 0.32 tolerated(0.26) benign(0.122) TCGA-FD-A6TH-01 19 18964084 18964084 G A UPF1 Missense_Mutation p.E361K 0.12 deleterious(0.01) benign(0.135) TCGA-FD-A6TH-01 19 18967817 18967817 C T UPF1 Silent p.L652L 0.31 TCGA-FD-A6TH-01 19 35786657 35786657 G A MAG Missense_Mutation p.S63N 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-FD-A6TH-01 19 38781187 38781187 G C SPINT2 Missense_Mutation p.E188D 0.69 tolerated(0.62) benign(0.01) TCGA-FD-A6TH-01 19 39108050 39108050 G T MAP4K1 Silent p.L64L 0.13 TCGA-FD-A6TH-01 19 42795737 42795737 C A CIC Missense_Mutation p.P909Q 0.14 benign(0.176) TCGA-FD-A6TH-01 19 43258402 43258402 A G PSG8 3'UTR 0.43 TCGA-FD-A6TH-01 19 44832110 44832110 G A ZNF112 Nonsense_Mutation p.Q740* 0.15 TCGA-FD-A6TH-01 19 45489719 45489719 G A CLPTM1 Missense_Mutation p.E227K 0.24 deleterious(0.02) benign(0.213) TCGA-FD-A6TH-01 19 49656886 49656886 C T HRC Missense_Mutation p.E537K 0.11 tolerated(0.06) benign(0.059) TCGA-FD-A6TH-01 19 50411564 50411564 C T NUP62 Missense_Mutation p.E501K 0.47 deleterious(0.03) benign(0.082) TCGA-FD-A6TH-01 19 50957381 50957381 C G MYBPC2 Missense_Mutation p.I618M 0.48 deleterious(0.01) possibly_damaging(0.908) TCGA-FD-A6TH-01 19 53611727 53611727 T A ZNF415 Missense_Mutation p.Y524F 0.50 tolerated(0.08) benign(0) TCGA-FD-A6TH-01 19 53612795 53612795 G A ZNF415 Missense_Mutation p.S168F 0.43 deleterious(0.02) probably_damaging(0.991) TCGA-FD-A6TH-01 19 54485474 54485474 G A CACNG8 Missense_Mutation p.E217K 0.68 deleterious(0.01) probably_damaging(0.974) TCGA-FD-A6TH-01 19 55918211 55918211 G T UBE2S Silent p.T41T 0.23 TCGA-FD-A6TH-01 19 56466052 56466052 G A NLRP8 Missense_Mutation p.G210R 0.14 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TH-01 19 57037260 57037260 C G ZNF471 Missense_Mutation p.F608L 0.57 deleterious(0) benign(0.182) TCGA-FD-A6TH-01 1 112269581 112269581 C T FAM212B 3'UTR 0.81 TCGA-FD-A6TH-01 1 115829231 115829231 G A NGF Silent p.R62R 0.42 TCGA-FD-A6TH-01 1 153905130 153905130 G A DENND4B Silent p.N1249N 0.07 TCGA-FD-A6TH-01 1 156911198 156911198 G A ARHGEF11 Silent p.F1160F 0.27 TCGA-FD-A6TH-01 1 157803166 157803166 C T CD5L Silent p.L285L 0.28 TCGA-FD-A6TH-01 1 171753213 171753213 C G METTL13 Missense_Mutation p.Q163E 0.16 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TH-01 1 181702664 181702664 G C CACNA1E Missense_Mutation p.E1014Q 0.13 tolerated(0.28) benign(0.016) TCGA-FD-A6TH-01 1 204939815 204939815 C T NFASC Nonsense_Mutation p.R359* 0.80 TCGA-FD-A6TH-01 1 204953167 204953167 C T NFASC Intron 0.38 TCGA-FD-A6TH-01 1 228247982 228247982 C T WNT3A 3'UTR 0.44 TCGA-FD-A6TH-01 1 237993829 237993829 G C RYR2 Splice_Site p.X4886_splice 0.36 TCGA-FD-A6TH-01 1 245765899 245765899 C G KIF26B Missense_Mutation p.I457M 0.47 deleterious(0.01) unknown(0) TCGA-FD-A6TH-01 1 248616437 248616437 C G OR2T2 Missense_Mutation p.F113L 0.10 tolerated(0.15) benign(0.066) TCGA-FD-A6TH-01 1 38511353 38511353 C T POU3F1 Missense_Mutation p.E355K 0.36 deleterious(0) benign(0.155) TCGA-FD-A6TH-01 1 59147556 59147556 T A MYSM1 Missense_Mutation p.Q387L 0.47 tolerated(0.22) benign(0.003) TCGA-FD-A6TH-01 20 25456693 25456693 C T NINL Silent p.L1078L 0.42 TCGA-FD-A6TH-01 20 30584444 30584444 C T XKR7 Silent p.F308F 0.42 TCGA-FD-A6TH-01 20 42195745 42195745 C T SGK2 Missense_Mutation p.S85L 0.18 deleterious(0.02) benign(0.156) TCGA-FD-A6TH-01 20 42694567 42694568 - CCT TOX2 In_Frame_Ins p.P394dup 0.15 TCGA-FD-A6TH-01 20 44756800 44756800 C T CD40 Silent p.L195L 0.37 TCGA-FD-A6TH-01 20 45717905 45717905 C T EYA2 Missense_Mutation p.S230F 0.17 deleterious(0.02) possibly_damaging(0.506) TCGA-FD-A6TH-01 20 55211713 55211713 G A TFAP2C Missense_Mutation p.E324K 0.51 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TH-01 21 38538201 38538201 G A TTC3 Missense_Mutation p.A1229T 0.27 deleterious(0.04) benign(0.011) TCGA-FD-A6TH-01 22 26422720 26422720 G A MYO18B Silent p.K2260K 0.80 TCGA-FD-A6TH-01 22 26830398 26830398 G A ASPHD2 Missense_Mutation p.V273M 0.20 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TH-01 2 108487487 108487487 T A RGPD4 Silent p.G1009G 0.48 TCGA-FD-A6TH-01 2 125671715 125671715 C T CNTNAP5 Silent p.I1257I 0.57 TCGA-FD-A6TH-01 2 165383525 165383525 A G GRB14 Missense_Mutation p.M201T 0.64 tolerated(0.4) benign(0.004) TCGA-FD-A6TH-01 2 168106756 168106756 G C XIRP2 Missense_Mutation p.E2952Q 0.21 probably_damaging(0.999) TCGA-FD-A6TH-01 2 19553287 19553287 G C OSR1 Missense_Mutation p.H94D 0.22 tolerated(0.06) possibly_damaging(0.889) TCGA-FD-A6TH-01 2 233635617 233635617 G C KCNJ13 Missense_Mutation p.I152M 0.24 tolerated(0.26) probably_damaging(0.94) TCGA-FD-A6TH-01 2 239040306 239040306 G A ESPNL Missense_Mutation p.G984D 0.11 deleterious(0.01) possibly_damaging(0.641) TCGA-FD-A6TH-01 2 27466153 27466153 G A CAD Missense_Mutation p.E2190K 0.24 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TH-01 2 39088534 39088534 C G DHX57 Missense_Mutation p.D340H 0.33 deleterious(0.02) possibly_damaging(0.89) TCGA-FD-A6TH-01 2 48573431 48573431 G C FOXN2 Missense_Mutation p.Q26H 0.36 tolerated(0.15) benign(0.007) TCGA-FD-A6TH-01 3 108355502 108355502 G A DZIP3 Missense_Mutation p.G320S 0.20 deleterious(0) possibly_damaging(0.816) TCGA-FD-A6TH-01 3 160956546 160956546 C G NMD3 Missense_Mutation p.Q229E 0.23 tolerated(0.12) benign(0.14) TCGA-FD-A6TH-01 3 167189373 167189373 C T SERPINI2 Intron 0.42 TCGA-FD-A6TH-01 3 188327108 188327108 G A LPP Missense_Mutation p.G197R 0.37 deleterious(0.01) probably_damaging(0.97) TCGA-FD-A6TH-01 3 188592302 188592302 C G LPP 3'UTR 0.14 TCGA-FD-A6TH-01 3 32586425 32586425 C T DYNC1LI1 Missense_Mutation p.E171K 0.17 tolerated(0.06) benign(0.222) TCGA-FD-A6TH-01 3 36899411 36899411 T C TRANK1 Missense_Mutation p.K557R 0.25 tolerated(0.33) benign(0.014) TCGA-FD-A6TH-01 3 37170556 37170556 C T LRRFIP2 Missense_Mutation p.E59K 0.07 deleterious(0) possibly_damaging(0.889) TCGA-FD-A6TH-01 3 49721500 49721500 C T MST1 Silent p.V713V 0.22 TCGA-FD-A6TH-01 3 49750028 49750028 C T RNF123 Silent p.I871I 0.12 TCGA-FD-A6TH-01 3 52588862 52588862 G A PBRM1 Missense_Mutation p.P1389L 0.15 deleterious(0) benign(0.22) TCGA-FD-A6TH-01 3 58728237 58728237 G C C3orf67 Missense_Mutation p.L548V 0.18 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TH-01 3 89462299 89462299 C G EPHA3 Missense_Mutation p.P591A 0.54 deleterious(0.01) probably_damaging(0.996) TCGA-FD-A6TH-01 4 114278169 114278169 G A ANK2 Missense_Mutation p.D2799N 0.32 benign(0.008) TCGA-FD-A6TH-01 4 168155311 168155311 G A SPOCK3 Missense_Mutation p.S5L 0.36 tolerated_low_confidence(0.07) benign(0.049) TCGA-FD-A6TH-01 4 38799739 38799739 C T TLR1 Silent p.A238A 0.19 TCGA-FD-A6TH-01 4 41985026 41985026 T A DCAF4L1 3'UTR 0.33 TCGA-FD-A6TH-01 4 49052744 49052744 G T CWH43 Silent p.L633L 0.26 TCGA-FD-A6TH-01 5 133640198 133640198 C G CDKL3 Missense_Mutation p.E507Q 0.17 tolerated(0.18) benign(0.021) TCGA-FD-A6TH-01 5 13916456 13916456 C G DNAH5 Splice_Site p.X399_splice 0.16 TCGA-FD-A6TH-01 5 139886442 139886442 G A ANKHD1 Missense_Mutation p.R1144Q 0.16 possibly_damaging(0.553) TCGA-FD-A6TH-01 5 157214900 157214900 C G CLINT1 Missense_Mutation p.L562F 0.43 tolerated(0.24) benign(0.398) TCGA-FD-A6TH-01 5 161322816 161322816 T A GABRA1 Missense_Mutation p.V334E 0.77 deleterious(0) probably_damaging(0.995) TCGA-FD-A6TH-01 5 168189636 168189636 G A SLIT3 Silent p.P506P 0.33 TCGA-FD-A6TH-01 5 172517927 172517927 C T CREBRF Missense_Mutation p.R249W 0.27 deleterious_low_confidence(0) possibly_damaging(0.85) TCGA-FD-A6TH-01 5 172744705 172744705 G A STC2 3'UTR 0.91 TCGA-FD-A6TH-01 5 172755217 172755217 C T STC2 5'UTR 0.26 TCGA-FD-A6TH-01 5 175815937 175815937 C T HIGD2A Silent p.F39F 0.22 TCGA-FD-A6TH-01 5 24488012 24488012 G A CDH10 Silent p.D709D 0.44 TCGA-FD-A6TH-01 5 3600156 3600156 C T IRX1 Missense_Mutation p.T365I 0.14 deleterious(0) probably_damaging(0.969) TCGA-FD-A6TH-01 5 442536 442536 G A C5orf55 3'UTR 0.05 TCGA-FD-A6TH-01 5 56219188 56219188 C T MIER3 Missense_Mutation p.E473K 0.24 tolerated(0.31) possibly_damaging(0.547) TCGA-FD-A6TH-01 5 82817223 82817223 A T VCAN Missense_Mutation p.E1033V 0.28 deleterious(0.04) benign(0.063) TCGA-FD-A6TH-01 5 82835841 82835841 G C VCAN Missense_Mutation p.G2340A 0.44 tolerated(0.64) benign(0.009) TCGA-FD-A6TH-01 6 122774974 122774974 G A SERINC1 Missense_Mutation p.S177L 0.71 deleterious(0) probably_damaging(1) TCGA-FD-A6TH-01 6 160430048 160430048 C G IGF2R Missense_Mutation p.S99C 0.28 tolerated(0.18) possibly_damaging(0.776) TCGA-FD-A6TH-01 6 161491870 161491870 G C MAP3K4 Missense_Mutation p.L646F 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-FD-A6TH-01 6 25861871 25861871 G C SLC17A3 Silent p.L202L 0.25 TCGA-FD-A6TH-01 6 26392755 26392755 G A BTN2A2 Missense_Mutation p.A378T 0.25 tolerated(1) benign(0.004) TCGA-FD-A6TH-01 6 29054880 29054880 C G OR2B3 Missense_Mutation p.C49S 0.53 tolerated(1) benign(0.001) TCGA-FD-A6TH-01 6 30128401 30128401 C T TRIM10 Missense_Mutation p.V79M 0.46 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TH-01 6 31742304 31742304 G A VWA7 Missense_Mutation p.P237L 0.25 tolerated(0.06) benign(0.03) TCGA-FD-A6TH-01 6 36261951 36261951 C T PNPLA1 Intron 0.50 TCGA-FD-A6TH-01 6 63990913 63990913 C G LGSN Missense_Mutation p.L181F 0.32 tolerated(0.33) possibly_damaging(0.652) TCGA-FD-A6TH-01 6 66054005 66054005 C T EYS Missense_Mutation p.E509K 0.35 tolerated(0.64) benign(0.078) TCGA-FD-A6TH-01 6 74078932 74078932 G A OOEP Nonsense_Mutation p.R123* 0.44 TCGA-FD-A6TH-01 7 126086404 126086404 A C GRM8 Missense_Mutation p.L818R 0.16 deleterious(0) probably_damaging(0.949) TCGA-FD-A6TH-01 7 127343360 127343361 - T SND1 Frame_Shift_Ins p.G275Vfs*61 0.21 TCGA-FD-A6TH-01 7 128484142 128484142 C T FLNC Missense_Mutation p.S1005L 0.66 deleterious(0.01) possibly_damaging(0.841) TCGA-FD-A6TH-01 7 140037139 140037139 G A SLC37A3 Missense_Mutation p.S446F 0.35 deleterious(0) probably_damaging(0.91) TCGA-FD-A6TH-01 7 142568644 142568644 C A EPHB6 Nonsense_Mutation p.S1018* 0.34 TCGA-FD-A6TH-01 7 148484180 148484180 G A CUL1 Missense_Mutation p.D483N 0.56 deleterious(0.02) benign(0.292) TCGA-FD-A6TH-01 7 149524942 149524942 A G SSPO RNA 0.12 TCGA-FD-A6TH-01 7 20766696 20766696 A G ABCB5 Missense_Mutation p.I887V 0.30 tolerated(1) benign(0.005) TCGA-FD-A6TH-01 7 21628852 21628852 T C DNAH11 Missense_Mutation p.L667S 0.42 benign(0.005) TCGA-FD-A6TH-01 7 48269547 48269548 - CA ABCA13 Frame_Shift_Ins p.E255Pfs*12 0.27 TCGA-FD-A6TH-01 7 48312229 48312229 C T ABCA13 Missense_Mutation p.T989I 0.48 benign(0.02) TCGA-FD-A6TH-01 7 75609788 75609788 C T POR Silent p.L166L 0.60 TCGA-FD-A6TH-01 7 905679 905679 C T SUN1 Missense_Mutation p.S652L 0.32 deleterious(0) probably_damaging(0.966) TCGA-FD-A6TH-01 7 99227357 99227357 G T ZSCAN25 Missense_Mutation p.R450L 0.54 tolerated(0.11) probably_damaging(0.963) TCGA-FD-A6TH-01 7 99227358 99227358 G T ZSCAN25 Silent p.R450R 0.53 TCGA-FD-A6TH-01 8 103291149 103291149 C T UBR5 Missense_Mutation p.D2065N 0.06 deleterious(0) probably_damaging(0.93) TCGA-FD-A6TH-01 8 113353805 113353805 G C CSMD3 Missense_Mutation p.Q2185E 0.25 tolerated(1) benign(0.296) TCGA-FD-A6TH-01 8 145584534 145584535 - G SLC52A2 Frame_Shift_Ins p.R402Pfs*43 0.45 TCGA-FD-A6TH-01 8 59058917 59058917 C A FAM110B Missense_Mutation p.P43H 0.56 tolerated(0.06) probably_damaging(0.961) TCGA-FD-A6TH-01 8 68255453 68255453 C T ARFGEF1 Missense_Mutation p.E24K 0.14 deleterious(0.01) benign(0.217) TCGA-FD-A6TH-01 8 77764433 77764433 C T ZFHX4 Missense_Mutation p.S1759F 0.53 possibly_damaging(0.683) TCGA-FD-A6TH-01 8 94767363 94767363 G A TMEM67 Missense_Mutation p.R74Q 0.16 tolerated(0.61) benign(0.002) TCGA-FD-A6TH-01 9 105767007 105767007 C T CYLC2 Missense_Mutation p.R71C 0.23 deleterious(0.03) probably_damaging(0.977) TCGA-FD-A6TH-01 9 105768121 105768121 G A CYLC2 3'UTR 0.35 TCGA-FD-A6TH-01 9 139309089 139309089 C T PMPCA Silent p.P174P 0.66 TCGA-FD-A6TH-01 9 140126197 140126197 C G SLC34A3 Missense_Mutation p.L15V 0.10 tolerated(0.1) probably_damaging(0.952) TCGA-FD-A6TH-01 9 14722520 14722520 C T CER1 Missense_Mutation p.E51K 0.17 tolerated(0.21) possibly_damaging(0.531) TCGA-FD-A6TH-01 9 98209517 98209517 G C PTCH1 Missense_Mutation p.P1341A 0.22 tolerated_low_confidence(0.71) benign(0.002) TCGA-FD-A6TH-01 X 102337195 102337195 G C NXF3 Missense_Mutation p.S293C 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-FD-A6TH-01 X 125298921 125298921 G A DCAF12L2 Silent p.V329V 0.83 TCGA-FD-A6TH-01 X 132437354 132437354 C T GPC4 Silent p.V436V 0.41 TCGA-FD-A6TH-01 X 150912944 150912944 G C CNGA2 Missense_Mutation p.E657Q 0.33 tolerated(0.14) benign(0.025) TCGA-FD-A6TH-01 X 154490249 154490249 C T RAB39B Missense_Mutation p.E161K 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-FD-A6TH-01 X 48117200 48117200 C A SSX1 Missense_Mutation p.T30K 0.77 tolerated(1) benign(0.001) TCGA-FD-A6TH-01 X 49143537 49143537 G A PPP1R3F Silent p.L795L 0.88 TCGA-FD-A6TH-01 X 71493768 71493768 G A RPS4X Silent p.L139L 0.50 TCGA-FD-A6TH-01 X 73959940 73959940 T G KIAA2022 Missense_Mutation p.K1484N 0.33 deleterious(0) probably_damaging(0.957) TCGA-FD-A6TI-01 10 124924701 124924701 A T BUB3 3'UTR 0.50 TCGA-FD-A6TI-01 10 135003172 135003172 C T KNDC1 Silent p.N504N 0.35 TCGA-FD-A6TI-01 10 15255000 15255000 C T FAM171A1 Missense_Mutation p.D863N 0.16 tolerated(0.23) possibly_damaging(0.804) TCGA-FD-A6TI-01 10 15760837 15760837 C T ITGA8 Missense_Mutation p.G91R 0.32 deleterious(0) probably_damaging(1) TCGA-FD-A6TI-01 10 50954894 50954894 C T OGDHL Missense_Mutation p.A400T 0.24 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TI-01 10 75528784 75528784 C T SEC24C Silent p.F766F 0.10 TCGA-FD-A6TI-01 10 75609084 75609084 T C CAMK2G Missense_Mutation p.I117V 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.824) TCGA-FD-A6TI-01 10 79793654 79793654 G A RPS24 5'UTR 0.25 TCGA-FD-A6TI-01 10 81918922 81918922 G A ANXA11 Missense_Mutation p.R404W 0.23 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TI-01 11 108216624 108216626 CTT - ATM In_Frame_Del p.S2860del 0.28 TCGA-FD-A6TI-01 11 119182643 119182643 T G MCAM Missense_Mutation p.E387A 0.34 tolerated(1) benign(0.02) TCGA-FD-A6TI-01 11 129800974 129800974 C G PRDM10 Missense_Mutation p.E489D 0.11 tolerated(0.44) benign(0.074) TCGA-FD-A6TI-01 11 27114851 27114851 C A BBOX1 Missense_Mutation p.D157E 0.21 tolerated(1) benign(0.012) TCGA-FD-A6TI-01 11 43923142 43923142 A G ALKBH3 Missense_Mutation p.N179S 0.29 deleterious(0) probably_damaging(0.988) TCGA-FD-A6TI-01 11 45246394 45246394 G A PRDM11 Missense_Mutation p.G457S 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.447) TCGA-FD-A6TI-01 11 55062892 55062892 G C TRIM51HP Intron 0.47 TCGA-FD-A6TI-01 11 59245436 59245436 C T OR4D10 Silent p.Y178Y 0.41 TCGA-FD-A6TI-01 11 64978730 64978730 G T CAPN1 Splice_Site p.X707_splice 0.31 TCGA-FD-A6TI-01 11 66625302 66625302 G T LRFN4 Silent p.S29S 0.13 TCGA-FD-A6TI-01 12 101685820 101685820 G T UTP20 Missense_Mutation p.A371S 0.22 tolerated(0.7) benign(0.02) TCGA-FD-A6TI-01 12 112513542 112513542 T A NAA25 Missense_Mutation p.Y239F 0.39 tolerated(0.24) benign(0.113) TCGA-FD-A6TI-01 12 113543592 113543592 C T RASAL1 Missense_Mutation p.R587H 0.14 tolerated(0.07) benign(0.111) TCGA-FD-A6TI-01 12 113835050 113835050 G A SDS Silent p.I191I 0.37 TCGA-FD-A6TI-01 12 120649864 120649864 C G PXN 3'UTR 0.20 TCGA-FD-A6TI-01 12 131476909 131476909 C A GPR133 Nonsense_Mutation p.S313* 0.31 TCGA-FD-A6TI-01 12 26752169 26752169 C T ITPR2 Missense_Mutation p.G1304D 0.13 deleterious(0) probably_damaging(1) TCGA-FD-A6TI-01 12 44196169 44196169 A G TWF1 Missense_Mutation p.Y68H 0.14 deleterious(0.01) probably_damaging(0.928) TCGA-FD-A6TI-01 12 56435942 56435942 G T RPS26 5'UTR 0.24 TCGA-FD-A6TI-01 12 57625341 57625341 G A SHMT2 Silent p.K103K 0.27 TCGA-FD-A6TI-01 13 23914858 23914858 G T SACS Missense_Mutation p.L1053I 0.32 benign(0.272) TCGA-FD-A6TI-01 13 67801251 67801251 G T PCDH9 Missense_Mutation p.A441D 0.35 deleterious(0) probably_damaging(1) TCGA-FD-A6TI-01 13 88329428 88329428 C T SLITRK5 Silent p.P595P 0.33 TCGA-FD-A6TI-01 14 101488404 101488404 G C MIR379 RNA 0.34 TCGA-FD-A6TI-01 14 106111116 106111116 C G IGHG2 Missense_Mutation p.K4N 0.45 deleterious(0.01) possibly_damaging(0.526) TCGA-FD-A6TI-01 14 47120555 47120555 C - RPL10L Frame_Shift_Del p.V129Sfs*20 0.19 TCGA-FD-A6TI-01 14 51087320 51087320 T C ATL1 Missense_Mutation p.I289T 0.29 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TI-01 14 71216728 71216728 C T MAP3K9 Missense_Mutation p.A358T 0.28 deleterious(0) probably_damaging(0.99) TCGA-FD-A6TI-01 14 90870756 90870758 CGT - CALM1 In_Frame_Del p.R107del 0.21 TCGA-FD-A6TI-01 15 102345982 102345982 G A OR4F6 Silent p.S20S 0.32 TCGA-FD-A6TI-01 15 22383140 22383140 G T OR4N4 Missense_Mutation p.C223F 0.09 tolerated(0.19) benign(0.03) TCGA-FD-A6TI-01 15 48888519 48888519 C T FBN1 Missense_Mutation p.A167T 0.12 benign(0.115) TCGA-FD-A6TI-01 15 78917493 78917493 G A CHRNB4 Silent p.Y493Y 0.09 TCGA-FD-A6TI-01 16 11773526 11773526 G A TXNDC11 Missense_Mutation p.S801F 0.32 tolerated(0.06) possibly_damaging(0.664) TCGA-FD-A6TI-01 16 29816260 29816260 C A KIF22 Silent p.A601A 0.33 TCGA-FD-A6TI-01 16 55801349 55801349 C T CES1P1 RNA 0.49 TCGA-FD-A6TI-01 16 64981373 64981373 T A CDH11 3'UTR 0.31 TCGA-FD-A6TI-01 16 64982537 64982537 G A CDH11 Intron 0.22 TCGA-FD-A6TI-01 16 67298295 67298295 C T SLC9A5 Missense_Mutation p.A628V 0.39 deleterious(0.02) benign(0.026) TCGA-FD-A6TI-01 16 77227491 77227491 G - MON1B Frame_Shift_Del p.D99Tfs*17 0.35 TCGA-FD-A6TI-01 17 11642222 11642222 G A DNAH9 Missense_Mutation p.R1947K 0.35 benign(0.079) TCGA-FD-A6TI-01 17 28434866 28434866 G A EFCAB5 Missense_Mutation p.E1446K 0.14 tolerated(0.12) possibly_damaging(0.625) TCGA-FD-A6TI-01 17 39079227 39079227 A C KRT23 3'UTR 0.30 TCGA-FD-A6TI-01 18 20735792 20735792 C T CABLES1 Intron 0.15 TCGA-FD-A6TI-01 18 32409012 32409012 G A DTNA Intron 0.35 TCGA-FD-A6TI-01 18 39576624 39576624 C G PIK3C3 Missense_Mutation p.T305S 0.25 tolerated(0.22) benign(0.117) TCGA-FD-A6TI-01 18 50866208 50866208 G A DCC Missense_Mutation p.V764I 0.21 tolerated(1) benign(0.055) TCGA-FD-A6TI-01 18 74696844 74696844 C T RP11-862L9.3 3'Flank 0.32 TCGA-FD-A6TI-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.18 probably_damaging(0.99) TCGA-FD-A6TI-01 19 11143975 11143975 G A SMARCA4 Missense_Mutation p.A1186T 0.23 probably_damaging(0.923) TCGA-FD-A6TI-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.15 probably_damaging(1) TCGA-FD-A6TI-01 19 19337667 19337667 G A NCAN Missense_Mutation p.R482H 0.13 deleterious(0.04) possibly_damaging(0.828) TCGA-FD-A6TI-01 19 36214157 36214157 A T KMT2B Missense_Mutation p.T995S 0.38 probably_damaging(0.973) TCGA-FD-A6TI-01 19 49814638 49814638 T G SLC6A16 5'UTR 0.36 TCGA-FD-A6TI-01 19 50473439 50473439 A G SIGLEC16 RNA 0.21 TCGA-FD-A6TI-01 19 50982298 50982298 G A EMC10 Missense_Mutation p.S91N 0.31 tolerated(0.24) benign(0.013) TCGA-FD-A6TI-01 19 52034755 52034755 C T SIGLEC6 Missense_Mutation p.R29Q 0.31 tolerated(0.62) benign(0.002) TCGA-FD-A6TI-01 1 104114837 104114837 G A AMY2B Missense_Mutation p.D92N 0.32 tolerated(0.5) benign(0.001) TCGA-FD-A6TI-01 1 112028433 112028433 A T ADORA3 Missense_Mutation p.I301N 0.41 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FD-A6TI-01 1 120438047 120438047 G T ADAM30 Missense_Mutation p.L305I 0.27 tolerated(0.22) benign(0.135) TCGA-FD-A6TI-01 1 120493457 120493457 T C NOTCH2 Missense_Mutation p.Y790C 0.30 tolerated(0.16) possibly_damaging(0.518) TCGA-FD-A6TI-01 1 1231147 1231147 G A ACAP3 Silent p.P558P 0.32 TCGA-FD-A6TI-01 1 12835795 12835795 G A PRAMEF12 Missense_Mutation p.A133T 0.24 tolerated(0.46) probably_damaging(0.981) TCGA-FD-A6TI-01 1 147092748 147092748 G A BCL9 Silent p.P929P 0.13 TCGA-FD-A6TI-01 1 151339317 151339317 C A SELENBP1 Missense_Mutation p.G182V 0.27 tolerated(0.2) benign(0.013) TCGA-FD-A6TI-01 1 156883024 156883024 A G PEAR1 Missense_Mutation p.S821G 0.25 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TI-01 1 158224902 158224902 C A CD1A Silent p.V29V 0.32 TCGA-FD-A6TI-01 1 163306539 163306539 A G NUF2 Splice_Site p.X113_splice 0.27 TCGA-FD-A6TI-01 1 176759080 176759080 G A PAPPA2 Silent p.Q1617Q 0.22 TCGA-FD-A6TI-01 1 186056410 186056410 A T HMCN1 Silent p.I3036I 0.38 TCGA-FD-A6TI-01 1 201984408 201984408 C T ELF3 Missense_Mutation p.S358L 0.20 deleterious(0) probably_damaging(0.952) TCGA-FD-A6TI-01 1 204393813 204393813 C G PIK3C2B 3'UTR 0.33 TCGA-FD-A6TI-01 1 204494650 204494650 A T MDM4 Missense_Mutation p.T2S 0.26 tolerated(0.08) benign(0.019) TCGA-FD-A6TI-01 1 230841853 230841853 C T AGT Missense_Mutation p.G317D 0.33 deleterious(0.02) possibly_damaging(0.524) TCGA-FD-A6TI-01 1 27057642 27057642 G T ARID1A Splice_Site p.X451_splice 0.32 TCGA-FD-A6TI-01 1 27092947 27092947 G A ARID1A Splice_Site p.X960_splice 0.33 TCGA-FD-A6TI-01 1 52704110 52704110 C T ZFYVE9 Missense_Mutation p.L341F 0.30 deleterious_low_confidence(0.05) benign(0.172) TCGA-FD-A6TI-01 1 7723683 7723683 C T CAMTA1 Missense_Mutation p.P359L 0.37 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TI-01 20 43836660 43836660 C T SEMG1 Missense_Mutation p.A241V 0.33 tolerated(0.11) probably_damaging(0.998) TCGA-FD-A6TI-01 20 62738023 62738023 C - NPBWR2 Frame_Shift_Del p.I55Sfs*6 0.42 TCGA-FD-A6TI-01 2 121746727 121746727 C T GLI2 Silent p.D1079D 0.16 TCGA-FD-A6TI-01 2 141458077 141458077 T A LRP1B Missense_Mutation p.T2181S 0.25 benign(0) TCGA-FD-A6TI-01 2 170419775 170419775 C T FASTKD1 Missense_Mutation p.D178N 0.21 tolerated(0.14) benign(0.172) TCGA-FD-A6TI-01 2 179442499 179442499 G A TTN Missense_Mutation p.S22885L 0.28 TCGA-FD-A6TI-01 2 179584176 179584176 G A TTN Missense_Mutation p.R7981W 0.16 TCGA-FD-A6TI-01 2 179584854 179584854 T A TTN Missense_Mutation p.S7839C 0.23 TCGA-FD-A6TI-01 2 179732820 179732820 C T CCDC141 Missense_Mutation p.R836H 0.17 tolerated(1) benign(0) TCGA-FD-A6TI-01 2 185802383 185802383 G A ZNF804A Missense_Mutation p.V754I 0.47 tolerated(0.71) benign(0.014) TCGA-FD-A6TI-01 2 190541358 190541358 A G ANKAR Missense_Mutation p.T48A 0.33 tolerated(0.54) benign(0.004) TCGA-FD-A6TI-01 2 232262646 232262646 G A B3GNT7 Silent p.T72T 0.15 TCGA-FD-A6TI-01 2 234545152 234545152 C T UGT1A10 5'UTR 0.12 TCGA-FD-A6TI-01 2 242202201 242202201 G A HDLBP Silent p.L125L 0.35 TCGA-FD-A6TI-01 2 29274942 29274942 C T FAM179A Missense_Mutation p.P1015S 0.22 tolerated_low_confidence(0.11) benign(0.042) TCGA-FD-A6TI-01 2 39233657 39233657 C A SOS1 Missense_Mutation p.R896L 0.07 deleterious(0) probably_damaging(0.927) TCGA-FD-A6TI-01 2 80530558 80530558 G T LRRTM1 Silent p.P129P 0.12 TCGA-FD-A6TI-01 3 100096577 100096577 A G TOMM70A Missense_Mutation p.V355A 0.04 deleterious(0) probably_damaging(0.917) TCGA-FD-A6TI-01 3 100096578 100096578 C G TOMM70A Missense_Mutation p.V355L 0.04 tolerated(0.06) benign(0.174) TCGA-FD-A6TI-01 3 124044986 124044986 A G KALRN Missense_Mutation p.M416V 0.39 deleterious(0.01) benign(0.099) TCGA-FD-A6TI-01 3 124048835 124048835 C T KALRN Missense_Mutation p.T469I 0.42 deleterious(0.01) possibly_damaging(0.452) TCGA-FD-A6TI-01 3 12610489 12610489 G A MKRN2 Missense_Mutation p.G48R 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-FD-A6TI-01 3 137717828 137717828 G A CLDN18 Missense_Mutation p.V40I 0.18 tolerated(0.58) benign(0.292) TCGA-FD-A6TI-01 3 193183967 193183967 G T ATP13A4 Missense_Mutation p.F373L 0.48 deleterious(0.02) possibly_damaging(0.465) TCGA-FD-A6TI-01 3 23997585 23997585 A C NR1D2 Missense_Mutation p.H114P 0.21 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TI-01 3 38647582 38647582 C A SCN5A Missense_Mutation p.G400W 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A6TI-01 3 49397742 49397742 G A RHOA Missense_Mutation p.A161V 0.46 deleterious(0.01) possibly_damaging(0.546) TCGA-FD-A6TI-01 3 53757470 53757470 A G CACNA1D Missense_Mutation p.N579S 0.04 deleterious(0.04) probably_damaging(0.994) TCGA-FD-A6TI-01 4 100134892 100134892 C T ADH6 Missense_Mutation p.G45R 0.30 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TI-01 4 106647779 106647779 C G GSTCD Missense_Mutation p.P313R 0.24 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TI-01 4 155241754 155241754 C T DCHS2 Silent p.R1144R 0.30 TCGA-FD-A6TI-01 4 156136278 156136278 G T NPY2R 3'UTR 0.39 TCGA-FD-A6TI-01 4 22749055 22749055 C T GBA3 Silent p.S141S 0.42 TCGA-FD-A6TI-01 4 52945996 52945996 G T SPATA18 Missense_Mutation p.E422D 0.32 deleterious(0.02) probably_damaging(0.953) TCGA-FD-A6TI-01 4 6335436 6335436 G A PPP2R2C Silent p.P271P 0.38 TCGA-FD-A6TI-01 4 84508407 84508407 G - AGPAT9 Splice_Site p.X161_splice 0.22 TCGA-FD-A6TI-01 5 10256184 10256184 A G CCT5 Missense_Mutation p.K150R 0.28 tolerated(0.32) benign(0.006) TCGA-FD-A6TI-01 5 140812115 140812115 G T PCDHGA12 Missense_Mutation p.D597Y 0.29 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-FD-A6TI-01 5 145598544 145598555 CTAGATGTGATG - RBM27 Splice_Site p.X20_splice 0.22 TCGA-FD-A6TI-01 5 145616996 145616996 G A RBM27 Splice_Site p.X427_splice 0.26 TCGA-FD-A6TI-01 5 167882478 167882478 C T WWC1 Missense_Mutation p.R926C 0.31 deleterious(0) probably_damaging(1) TCGA-FD-A6TI-01 6 118228909 118228909 C A SLC35F1 Missense_Mutation p.P7Q 0.20 tolerated_low_confidence(0.24) unknown(0) TCGA-FD-A6TI-01 6 152631630 152631630 C A SYNE1 Missense_Mutation p.E5640D 0.31 probably_damaging(0.996) TCGA-FD-A6TI-01 6 152640035 152640035 T A SYNE1 Missense_Mutation p.K5451M 0.20 probably_damaging(0.999) TCGA-FD-A6TI-01 6 158923365 158923365 C A TULP4 Silent p.T890T 0.13 TCGA-FD-A6TI-01 6 160201115 160201115 T C TCP1 Missense_Mutation p.K368E 0.16 deleterious(0.03) benign(0.278) TCGA-FD-A6TI-01 6 167786689 167786689 C T TCP10 Missense_Mutation p.A317T 0.18 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-FD-A6TI-01 6 169626318 169626318 C A THBS2 Missense_Mutation p.G832V 0.20 deleterious(0) probably_damaging(1) TCGA-FD-A6TI-01 6 42977162 42977162 A T PPP2R5D Missense_Mutation p.R452W 0.33 deleterious(0) probably_damaging(0.954) TCGA-FD-A6TI-01 6 42977163 42977163 G T PPP2R5D Missense_Mutation p.R452M 0.32 deleterious(0) possibly_damaging(0.788) TCGA-FD-A6TI-01 6 44223075 44223075 C G SLC35B2 Missense_Mutation p.V223L 0.38 deleterious(0) probably_damaging(0.986) TCGA-FD-A6TI-01 6 56044405 56044405 C T COL21A1 Missense_Mutation p.R204K 0.17 tolerated(0.41) benign(0.173) TCGA-FD-A6TI-01 6 75825747 75825747 A G COL12A1 Missense_Mutation p.Y2516H 0.31 probably_damaging(0.991) TCGA-FD-A6TI-01 7 100355924 100355924 G T ZAN Missense_Mutation p.V1137L 0.26 unknown(0) TCGA-FD-A6TI-01 7 119915099 119915099 A G KCND2 Missense_Mutation p.K138R 0.39 tolerated(0.86) benign(0.027) TCGA-FD-A6TI-01 7 128452803 128452803 G A CCDC136 Silent p.Q861Q 0.21 TCGA-FD-A6TI-01 7 2984029 2984029 C T CARD11 Silent p.T167T 0.25 TCGA-FD-A6TI-01 7 48506635 48506635 C T ABCA13 Missense_Mutation p.P4300S 0.24 benign(0.017) TCGA-FD-A6TI-01 7 92763898 92763898 G A SAMD9L Missense_Mutation p.R463W 0.22 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TI-01 8 144898646 144898646 G C PUF60 3'UTR 0.14 TCGA-FD-A6TI-01 8 22475230 22475230 C T CCAR2 Missense_Mutation p.S671L 0.24 tolerated(0.29) benign(0.033) TCGA-FD-A6TI-01 8 24298631 24298631 G T ADAM7 Missense_Mutation p.G4W 0.56 deleterious(0.02) possibly_damaging(0.797) TCGA-FD-A6TI-01 8 28385125 28385125 A G FZD3 Missense_Mutation p.N283S 0.61 tolerated(0.19) probably_damaging(0.998) TCGA-FD-A6TI-01 8 38175548 38175548 C G WHSC1L1 Intron 0.55 TCGA-FD-A6TI-01 8 49831295 49831295 T C SNAI2 3'UTR 0.16 TCGA-FD-A6TI-01 8 8197134 8197134 T C SGK223 Missense_Mutation p.N725S 0.11 probably_damaging(0.97) TCGA-FD-A6TI-01 9 101900167 101900167 A T TGFBR1 Missense_Mutation p.I201F 0.66 deleterious(0) probably_damaging(0.997) TCGA-FD-A6TI-01 9 107379657 107379657 C T OR13C9 Missense_Mutation p.D277N 0.64 deleterious(0.03) benign(0.061) TCGA-FD-A6TI-01 9 119943369 119943369 C T ASTN2 Intron 0.80 TCGA-FD-A6TI-01 9 131379913 131379931 ATTCAGGGAGAAGAAGCTG - SPTAN1 Splice_Site p.X1786_splice 0.59 TCGA-FD-A6TI-01 9 135782758 135782758 C T TSC1 Splice_Site p.X422_splice 0.69 TCGA-FD-A6TI-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.75 TCGA-FD-A6TI-01 X 125685911 125685911 G A DCAF12L1 Silent p.F227F 0.33 TCGA-FD-A6TI-01 X 48460452 48460452 G A WDR13 Splice_Site p.X338_splice 0.81 TCGA-FD-A6TK-01 10 106035020 106035020 T G GSTO2 Missense_Mutation p.I24S 0.11 deleterious(0) probably_damaging(0.917) TCGA-FD-A6TK-01 10 108371772 108371772 C T SORCS1 Missense_Mutation p.R977Q 0.17 tolerated(1) benign(0.006) TCGA-FD-A6TK-01 10 25313213 25313213 C T THNSL1 Missense_Mutation p.S354F 0.10 deleterious(0) probably_damaging(0.928) TCGA-FD-A6TK-01 11 1093759 1093759 C G MUC2 Missense_Mutation p.Q1860E 0.18 unknown(0) TCGA-FD-A6TK-01 11 1093788 1093788 C G MUC2 Silent p.L1869L 0.17 TCGA-FD-A6TK-01 11 111249928 111249928 C T POU2AF1 5'UTR 0.18 TCGA-FD-A6TK-01 11 111750077 111750077 C T C11orf1 5'UTR 0.22 TCGA-FD-A6TK-01 11 119003911 119003911 C T HINFP Missense_Mutation p.S374L 0.10 deleterious(0) benign(0.11) TCGA-FD-A6TK-01 11 13427336 13427336 C G BTBD10 Missense_Mutation p.M292I 0.16 tolerated(0.16) benign(0.149) TCGA-FD-A6TK-01 11 18472565 18472565 G A LDHC Missense_Mutation p.R297Q 0.10 tolerated(0.84) benign(0.008) TCGA-FD-A6TK-01 11 4471175 4471175 C T OR52K2 Silent p.I202I 0.10 TCGA-FD-A6TK-01 11 5172730 5172730 G C OR52A1 Silent p.L290L 0.22 TCGA-FD-A6TK-01 11 65623612 65623612 C T CFL1 Silent p.A35A 0.15 TCGA-FD-A6TK-01 11 67219688 67219688 G A GPR152 Missense_Mutation p.P170S 0.07 tolerated(0.21) probably_damaging(1) TCGA-FD-A6TK-01 11 7949293 7949293 C T OR10A6 Missense_Mutation p.R306Q 0.15 tolerated(0.9) benign(0.004) TCGA-FD-A6TK-01 12 120651688 120651688 G A PXN Missense_Mutation p.S503L 0.21 deleterious(0) possibly_damaging(0.863) TCGA-FD-A6TK-01 12 12815130 12815130 G A GPR19 Silent p.L85L 0.11 TCGA-FD-A6TK-01 12 45410290 45410290 G A DBX2 Missense_Mutation p.R267W 0.10 deleterious(0) possibly_damaging(0.582) TCGA-FD-A6TK-01 12 45695871 45695871 G C ANO6 Missense_Mutation p.E70Q 0.13 tolerated(0.19) benign(0.003) TCGA-FD-A6TK-01 12 56221331 56221331 G A DNAJC14 Missense_Mutation p.S371F 0.19 tolerated(0.16) benign(0.004) TCGA-FD-A6TK-01 12 56221698 56221698 G A DNAJC14 Nonsense_Mutation p.Q249* 0.22 TCGA-FD-A6TK-01 12 56646622 56646622 C T ANKRD52 Missense_Mutation p.D415N 0.18 deleterious(0.02) possibly_damaging(0.506) TCGA-FD-A6TK-01 12 6981794 6981794 C A SPSB2 Missense_Mutation p.W91L 0.08 deleterious(0) probably_damaging(0.999) TCGA-FD-A6TK-01 13 110857866 110857866 C T COL4A1 Missense_Mutation p.G293D 0.07 unknown(0) TCGA-FD-A6TK-01 13 92345576 92345576 G T GPC5 Missense_Mutation p.G154V 0.33 deleterious(0) probably_damaging(1) TCGA-FD-A6TK-01 14 70634426 70634426 G C SLC8A3 Silent p.L238L 0.25 TCGA-FD-A6TK-01 14 71555916 71555916 G C PCNX Missense_Mutation p.E1816Q 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-FD-A6TK-01 14 77491906 77491906 T C IRF2BPL Missense_Mutation p.R744G 0.12 deleterious(0) unknown(0) TCGA-FD-A6TK-01 15 50497486 50497486 G A SLC27A2 Missense_Mutation p.D300N 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-FD-A6TK-01 15 68649580 68649580 T C ITGA11 Missense_Mutation p.R220G 0.06 deleterious(0) possibly_damaging(0.606) TCGA-FD-A6TK-01 15 72039219 72039220 CC - THSD4 Frame_Shift_Del p.L694Gfs*32 0.13 TCGA-FD-A6TK-01 15 72454682 72454682 C T GRAMD2 Silent p.A331A 0.12 TCGA-FD-A6TK-01 16 21212798 21212798 C G ZP2 Missense_Mutation p.R529T 0.09 tolerated(0.21) benign(0.088) TCGA-FD-A6TK-01 16 4873850 4873850 G A GLYR1 Missense_Mutation p.A199V 0.16 tolerated(0.15) benign(0.023) TCGA-FD-A6TK-01 17 15974823 15974824 - TGTT NCOR1 Frame_Shift_Ins p.I1351Kfs*4 0.24 TCGA-FD-A6TK-01 17 3343560 3343560 T C SPATA22 Missense_Mutation p.I325V 0.20 tolerated(0.13) benign(0.034) TCGA-FD-A6TK-01 17 33904532 33904532 G A PEX12 Silent p.L69L 0.28 TCGA-FD-A6TK-01 17 37006686 37006686 C G RPL23 Missense_Mutation p.R90T 0.13 deleterious(0) probably_damaging(0.994) TCGA-FD-A6TK-01 17 39767451 39767451 C G KRT16 Missense_Mutation p.G268A 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-FD-A6TK-01 17 48437382 48437382 G C XYLT2 Missense_Mutation p.Q776H 0.21 deleterious(0.02) benign(0.022) TCGA-FD-A6TK-01 17 4848289 4848289 C G RNF167 Missense_Mutation p.S344C 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-FD-A6TK-01 17 60813575 60813575 G C MARCH10 Missense_Mutation p.Q552E 0.15 tolerated(0.17) benign(0.164) TCGA-FD-A6TK-01 17 6718586 6718586 C T TEKT1 Silent p.L175L 0.23 TCGA-FD-A6TK-01 17 74094060 74094060 C T EXOC7 Missense_Mutation p.E153K 0.07 deleterious(0) probably_damaging(0.992) TCGA-FD-A6TK-01 17 78831689 78831689 G A RPTOR Missense_Mutation p.A500T 0.22 deleterious(0) possibly_damaging(0.741) TCGA-FD-A6TK-01 18 12817155 12817155 C G PTPN2 Missense_Mutation p.L235F 0.06 deleterious(0) possibly_damaging(0.869) TCGA-FD-A6TK-01 18 19997329 19997329 T A CTAGE1 Missense_Mutation p.E149V 0.10 deleterious(0) probably_damaging(0.94) TCGA-FD-A6TK-01 18 31325369 31325369 G A ASXL3 Missense_Mutation p.D1853N 0.19 probably_damaging(0.958) TCGA-FD-A6TK-01 19 1235886 1235886 A G C19orf26 Missense_Mutation p.V46A 0.08 tolerated(0.08) benign(0.003) TCGA-FD-A6TK-01 19 13345799 13345799 C T CACNA1A Missense_Mutation p.E1729K 0.16 benign(0.005) TCGA-FD-A6TK-01 19 16634045 16634045 C G CHERP Missense_Mutation p.E600Q 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.622) TCGA-FD-A6TK-01 19 22940592 22940592 A G ZNF99 Missense_Mutation p.C707R 0.12 deleterious(0) probably_damaging(1) TCGA-FD-A6TK-01 19 2430917 2430917 C T LMNB2 Missense_Mutation p.V619M 0.37 deleterious(0.02) benign(0.048) TCGA-FD-A6TK-01 19 367156 367156 C T THEG Silent p.P274P 0.12 TCGA-FD-A6TK-01 19 37619123 37619123 G C ZNF420 Missense_Mutation p.Q410H 0.21 deleterious(0.04) benign(0.364) TCGA-FD-A6TK-01 19 38996586 38996586 G A RYR1 Silent p.Q2847Q 0.11 TCGA-FD-A6TK-01 19 45451745 45451745 C T APOC2 Nonsense_Mutation p.R4* 0.13 TCGA-FD-A6TK-01 19 4548416 4548416 G A SEMA6B Missense_Mutation p.P438L 0.13 deleterious(0.03) probably_damaging(0.912) TCGA-FD-A6TK-01 19 4556965 4556965 C T SEMA6B Missense_Mutation p.E123K 0.24 tolerated(0.62) probably_damaging(0.92) TCGA-FD-A6TK-01 19 4557020 4557020 C T SEMA6B Silent p.L104L 0.22 TCGA-FD-A6TK-01 19 47423288 47423288 G A ARHGAP35 Nonsense_Mutation p.W452* 0.21 TCGA-FD-A6TK-01 19 50826854 50826854 G A KCNC3 Silent p.I452I 0.12 TCGA-FD-A6TK-01 19 51410081 51410081 G A KLK4 3'UTR 0.30 TCGA-FD-A6TK-01 19 52521306 52521306 C T ZNF614 Missense_Mutation p.E65K 0.20 deleterious(0.04) benign(0.013) TCGA-FD-A6TK-01 19 52538020 52538020 G A ZNF432 Silent p.L304L 0.14 TCGA-FD-A6TK-01 19 53015214 53015214 C T ZNF578 Missense_Mutation p.S527L 0.23 tolerated(0.19) benign(0) TCGA-FD-A6TK-01 19 53959565 53959565 G A ZNF761 RNA 0.20 TCGA-FD-A6TK-01 19 56173907 56173907 G T U2AF2 Missense_Mutation p.G176W 0.17 tolerated(0.16) benign(0.068) TCGA-FD-A6TK-01 19 9075291 9075291 G A MUC16 Missense_Mutation p.T4052I 0.06 unknown(0) TCGA-FD-A6TK-01 1 110884685 110884685 G T RBM15 Missense_Mutation p.R886S 0.47 deleterious(0) possibly_damaging(0.812) TCGA-FD-A6TK-01 1 15788060 15788060 C T CELA2A Missense_Mutation p.S45F 0.24 deleterious(0) probably_damaging(1) TCGA-FD-A6TK-01 1 158669954 158669954 A G OR6K2 Silent p.S163S 0.09 TCGA-FD-A6TK-01 1 17272853 17272853 G A CROCC Missense_Mutation p.E746K 0.15 probably_damaging(0.996) TCGA-FD-A6TK-01 1 201844342 201844342 C T IPO9 Nonsense_Mutation p.Q1001* 0.26 TCGA-FD-A6TK-01 1 210857019 210857019 C G KCNH1 Silent p.S858S 0.07 TCGA-FD-A6TK-01 1 21938046 21938046 C A RAP1GAP Missense_Mutation p.G312W 0.25 deleterious(0) probably_damaging(1) TCGA-FD-A6TK-01 1 234561434 234561434 G A TARBP1 Silent p.I1143I 0.20 TCGA-FD-A6TK-01 1 237921059 237921059 A T RYR2 Missense_Mutation p.N3770Y 0.25 probably_damaging(0.928) TCGA-FD-A6TK-01 1 27101250 27101250 G - ARID1A Frame_Shift_Del p.R1511Sfs*16 0.15 TCGA-FD-A6TK-01 1 39852938 39852938 G T MACF1 Missense_Mutation p.W2746C 0.08 probably_damaging(1) TCGA-FD-A6TK-01 1 47515128 47515128 C T CYP4X1 Missense_Mutation p.S436F 0.27 tolerated(0.09) benign(0.343) TCGA-FD-A6TK-01 1 54678280 54678280 G A MRPL37 Missense_Mutation p.M313I 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-FD-A6TK-01 1 8403894 8403894 C G SLC45A1 Missense_Mutation p.L690V 0.27 deleterious(0) benign(0.391) TCGA-FD-A6TK-01 20 25436314 25436314 C T NINL Missense_Mutation p.E1318K 0.12 tolerated(0.13) benign(0.017) TCGA-FD-A6TK-01 20 2591113 2591113 G A TMC2 Missense_Mutation p.E488K 0.09 deleterious(0) probably_damaging(0.949) TCGA-FD-A6TK-01 20 36500459 36500459 C T CTNNBL1 3'UTR 0.10 TCGA-FD-A6TK-01 20 37524313 37524313 A T PPP1R16B Missense_Mutation p.T143S 0.11 deleterious(0) possibly_damaging(0.5) TCGA-FD-A6TK-01 20 39788556 39788556 G A PLCG1 Nonsense_Mutation p.W139* 0.07 TCGA-FD-A6TK-01 20 44640876 44640876 C T MMP9 Silent p.R366R 0.08 TCGA-FD-A6TK-01 20 50769238 50769238 T C ZFP64 Missense_Mutation p.K498R 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-FD-A6TK-01 20 61143772 61143772 C T C20orf166 5'Flank 0.16 TCGA-FD-A6TK-01 21 46271532 46271532 T A PTTG1IP Missense_Mutation p.K169N 0.11 tolerated(0.09) probably_damaging(0.92) TCGA-FD-A6TK-01 22 30741064 30741064 G A SF3A1 Missense_Mutation p.T170M 0.07 tolerated(0.06) probably_damaging(0.996) TCGA-FD-A6TK-01 22 47307997 47307997 G A TBC1D22A Missense_Mutation p.A310T 0.21 deleterious(0) probably_damaging(1) TCGA-FD-A6TK-01 2 103040483 103040483 G C IL18RAP Missense_Mutation p.E95Q 0.07 tolerated(0.39) benign(0.012) TCGA-FD-A6TK-01 2 109384287 109384287 C T RANBP2 Missense_Mutation p.S2431L 0.26 tolerated(0.73) benign(0.059) TCGA-FD-A6TK-01 2 233028324 233028324 G T DIS3L2 Missense_Mutation p.S369I 0.27 tolerated(0.06) benign(0.14) TCGA-FD-A6TK-01 2 26705443 26705443 C T OTOF Silent p.Q470Q 0.13 TCGA-FD-A6TK-01 2 74754085 74754085 T C AUP1 Silent p.L393L 0.14 TCGA-FD-A6TK-01 3 108568095 108568095 T A TRAT1 Silent p.S99S 0.21 TCGA-FD-A6TK-01 3 133368235 133368235 G A TOPBP1 Missense_Mutation p.S499F 0.22 deleterious(0.01) benign(0.322) TCGA-FD-A6TK-01 3 134514450 134514450 C T EPHB1 5'UTR 0.12 TCGA-FD-A6TK-01 3 134514489 134514489 C G EPHB1 Missense_Mutation p.L6V 0.12 tolerated(0.14) unknown(0) TCGA-FD-A6TK-01 3 38798219 38798219 T C SCN10A Silent p.E412E 0.08 TCGA-FD-A6TK-01 3 4808219 4808219 C T ITPR1 Silent p.S1835S 0.12 TCGA-FD-A6TK-01 3 52382927 52382927 C T DNAH1 Silent p.I710I 0.23 TCGA-FD-A6TK-01 3 7494466 7494466 G A GRM7 Silent p.L449L 0.12 TCGA-FD-A6TK-01 4 1018971 1018971 G C FGFRL1 Missense_Mutation p.G451R 0.33 tolerated(0.48) possibly_damaging(0.653) TCGA-FD-A6TK-01 4 120528156 120528156 G C PDE5A Nonsense_Mutation p.S150* 0.14 TCGA-FD-A6TK-01 4 1244602 1244602 C T CTBP1 5'Flank 0.11 TCGA-FD-A6TK-01 4 187521287 187521287 G C FAT1 Missense_Mutation p.I3956M 0.14 benign(0.038) TCGA-FD-A6TK-01 4 68504713 68504713 C T UBA6 Missense_Mutation p.D562N 0.25 tolerated(0.13) benign(0.241) TCGA-FD-A6TK-01 4 7985015 7985015 T C ABLIM2 Silent p.K600K 0.20 TCGA-FD-A6TK-01 5 10417470 10417470 C T MARCH6 Missense_Mutation p.P746L 0.23 deleterious(0) possibly_damaging(0.766) TCGA-FD-A6TK-01 5 140207920 140207920 G A PCDHA6 Missense_Mutation p.G82S 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FD-A6TK-01 5 140264043 140264043 C T PCDHA13 Silent p.G730G 0.12 TCGA-FD-A6TK-01 5 178996402 178996402 G C RUFY1 Missense_Mutation p.L268F 0.09 deleterious(0.04) possibly_damaging(0.738) TCGA-FD-A6TK-01 5 66479677 66479677 G C CD180 Missense_Mutation p.H332D 0.05 tolerated(0.51) benign(0.039) TCGA-FD-A6TK-01 5 68805495 68805495 A G OCLN Missense_Mutation p.Y193C 0.07 deleterious(0) probably_damaging(1) TCGA-FD-A6TK-01 6 100838955 100838955 C A SIM1 Missense_Mutation p.W528L 0.19 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-FD-A6TK-01 6 116443112 116443112 C T COL10A1 Missense_Mutation p.R56K 0.06 tolerated(0.36) unknown(0) TCGA-FD-A6TK-01 6 116951634 116951634 C T RSPH4A Missense_Mutation p.S612F 0.14 deleterious(0) probably_damaging(0.998) TCGA-FD-A6TK-01 6 129486762 129486762 C T LAMA2 Silent p.C416C 0.19 TCGA-FD-A6TK-01 6 36930790 36930790 A T PI16 Silent p.A224A 0.27 TCGA-FD-A6TK-01 6 36930798 36930798 C G PI16 Missense_Mutation p.S227C 0.25 deleterious(0.01) possibly_damaging(0.797) TCGA-FD-A6TK-01 6 36931734 36931734 C G PI16 3'UTR 0.13 TCGA-FD-A6TK-01 6 44279135 44279135 C T AARS2 Silent p.L191L 0.19 TCGA-FD-A6TK-01 6 52441623 52441623 G A TRAM2 Missense_Mutation p.L31F 0.17 deleterious(0) benign(0.109) TCGA-FD-A6TK-01 6 70610195 70610195 C G COL19A1 Missense_Mutation p.F77L 0.24 tolerated(0.18) unknown(0) TCGA-FD-A6TK-01 6 74524749 74524749 C T CD109 Nonsense_Mutation p.R1272* 0.22 TCGA-FD-A6TK-01 6 90424276 90424276 C A MDN1 Missense_Mutation p.R2352L 0.15 benign(0.168) TCGA-FD-A6TK-01 7 117174340 117174340 T C CFTR Missense_Mutation p.L167P 0.31 deleterious(0) probably_damaging(0.993) TCGA-FD-A6TK-01 7 141756727 141756727 C G MGAM Silent p.T1226T 0.23 TCGA-FD-A6TK-01 7 14378256 14378256 C G DGKB Missense_Mutation p.G670A 0.07 deleterious(0.02) probably_damaging(1) TCGA-FD-A6TK-01 7 149133866 149133866 G A ZNF777 Missense_Mutation p.S380L 0.28 tolerated(0.06) benign(0.094) TCGA-FD-A6TK-01 7 151927357 151927357 A T KMT2C Missense_Mutation p.M940K 0.20 probably_damaging(0.991) TCGA-FD-A6TK-01 7 152008910 152008910 C T KMT2C Missense_Mutation p.D238N 0.09 possibly_damaging(0.881) TCGA-FD-A6TK-01 7 157000528 157000528 G C UBE3C Missense_Mutation p.E570Q 0.18 tolerated(0.09) benign(0.168) TCGA-FD-A6TK-01 7 157000605 157000605 G A UBE3C Silent p.Q595Q 0.36 TCGA-FD-A6TK-01 7 23309711 23309711 C T GPNMB Missense_Mutation p.S461F 0.36 deleterious(0) possibly_damaging(0.67) TCGA-FD-A6TK-01 7 36455379 36455379 C G ANLN Missense_Mutation p.Q470E 0.06 tolerated(0.14) possibly_damaging(0.637) TCGA-FD-A6TK-01 8 100654524 100654524 A G VPS13B Silent p.S1927S 0.19 TCGA-FD-A6TK-01 8 101153077 101153077 G T FBXO43 Missense_Mutation p.Q469K 0.06 tolerated(0.3) benign(0) TCGA-FD-A6TK-01 8 139707069 139707069 C T COL22A1 Silent p.P882P 0.14 TCGA-FD-A6TK-01 8 142506565 142506565 T C MROH5 Silent p.S4S 0.17 TCGA-FD-A6TK-01 8 26722361 26722361 C T ADRA1A Silent p.L42L 0.13 TCGA-FD-A6TK-01 9 131346760 131346760 C T SPTAN1 Missense_Mutation p.T798M 0.18 deleterious(0) possibly_damaging(0.796) TCGA-FD-A6TK-01 9 35045299 35045299 G C C9orf131 Missense_Mutation p.K891N 0.17 deleterious(0.03) probably_damaging(0.913) TCGA-FD-A6TK-01 X 129629691 129629691 C T RP1-274L7.1 Intron 0.30 TCGA-FD-A6TK-01 X 1712558 1712558 G T AKAP17A Missense_Mutation p.R68L 0.18 deleterious(0) probably_damaging(0.996) TCGA-FD-A6TK-01 X 17744282 17744282 C T NHS Nonsense_Mutation p.Q665* 0.28 TCGA-FD-A6TK-01 X 18209144 18209144 G A BEND2 Missense_Mutation p.S422F 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-FD-A6TK-01 X 20062507 20062507 G C MAP7D2 Missense_Mutation p.A285G 0.16 tolerated(0.22) probably_damaging(0.954) TCGA-FD-A6TK-01 X 32591737 32591737 C T DMD Nonsense_Mutation p.W574* 0.31 TCGA-FD-A6TK-01 X 47038526 47038526 C T RBM10 Nonsense_Mutation p.R230* 0.30 TCGA-FD-A6TK-01 X 69626793 69626793 C A KIF4A Silent p.I1041I 0.17 TCGA-FD-A6TK-01 X 73045990 73045990 C G XIST RNA 0.31 TCGA-FJ-A3Z7-01 10 103542092 103542092 A C NPM3 Missense_Mutation p.F114C 0.23 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3Z7-01 10 105942272 105942272 C T WDR96 Splice_Site p.X714_splice 0.21 TCGA-FJ-A3Z7-01 10 119799755 119799755 C A RAB11FIP2 Silent p.A225A 0.21 TCGA-FJ-A3Z7-01 10 124339407 124339407 C T DMBT1 Silent p.V331V 0.18 TCGA-FJ-A3Z7-01 10 127414265 127414265 G T EDRF1 Missense_Mutation p.G217V 0.25 tolerated(0.08) possibly_damaging(0.791) TCGA-FJ-A3Z7-01 10 15325988 15325988 C T FAM171A1 Missense_Mutation p.G72S 0.57 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z7-01 10 43088814 43088814 A T ZNF33B Nonsense_Mutation p.Y528* 0.31 TCGA-FJ-A3Z7-01 10 43088815 43088815 T A ZNF33B Missense_Mutation p.Y528F 0.30 tolerated(0.52) benign(0.168) TCGA-FJ-A3Z7-01 10 4889679 4889679 G A AKR1E2 Splice_Site p.X307_splice 0.11 TCGA-FJ-A3Z7-01 10 6262698 6262698 G T PFKFB3 Missense_Mutation p.R234L 0.12 possibly_damaging(0.526) TCGA-FJ-A3Z7-01 10 71978536 71978536 G C PPA1 Missense_Mutation p.S54C 0.43 deleterious(0) probably_damaging(0.928) TCGA-FJ-A3Z7-01 10 74692170 74692170 G T OIT3 Missense_Mutation p.C509F 0.30 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z7-01 10 81050724 81050724 G A ZMIZ1 Silent p.G183G 0.27 TCGA-FJ-A3Z7-01 10 90342026 90342026 G T RNLS Missense_Mutation p.Q53K 0.37 tolerated(0.62) benign(0.001) TCGA-FJ-A3Z7-01 11 102645984 102645984 G C MMP10 Missense_Mutation p.S334C 0.16 deleterious(0) probably_damaging(0.93) TCGA-FJ-A3Z7-01 11 110582896 110582896 G C ARHGAP20 Missense_Mutation p.S20C 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-FJ-A3Z7-01 11 118399370 118399370 G C TTC36 Missense_Mutation p.Q57H 0.14 deleterious(0) probably_damaging(0.963) TCGA-FJ-A3Z7-01 11 122017296 122017296 C T MIRLET7A2 RNA 0.42 TCGA-FJ-A3Z7-01 11 124180599 124180599 C T OR8D1 Missense_Mutation p.E22K 0.30 deleterious(0.04) benign(0.022) TCGA-FJ-A3Z7-01 11 125769668 125769668 G A HYLS1 Silent p.L135L 0.30 TCGA-FJ-A3Z7-01 11 132016342 132016342 C A NTM Missense_Mutation p.P112T 0.12 deleterious(0.02) probably_damaging(0.987) TCGA-FJ-A3Z7-01 11 14526580 14526580 G T PSMA1 3'Flank 0.15 TCGA-FJ-A3Z7-01 11 17464306 17464306 T A ABCC8 Missense_Mutation p.T531S 0.16 tolerated(0.4) benign(0.029) TCGA-FJ-A3Z7-01 11 17809627 17809627 C T SERGEF 3'UTR 0.20 TCGA-FJ-A3Z7-01 11 1782618 1782618 C T CTSD Missense_Mutation p.G50D 0.24 tolerated(0.27) benign(0.013) TCGA-FJ-A3Z7-01 11 28057955 28057955 G A KIF18A Silent p.I735I 0.27 TCGA-FJ-A3Z7-01 11 3111839 3111839 C G OSBPL5 Missense_Mutation p.E783Q 0.10 tolerated(0.07) benign(0.219) TCGA-FJ-A3Z7-01 11 4127384 4127384 G C RRM1 Missense_Mutation p.D73H 0.31 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FJ-A3Z7-01 11 433382 433382 G A ANO9 Silent p.L94L 0.19 TCGA-FJ-A3Z7-01 11 44129413 44129413 G T EXT2 Nonsense_Mutation p.E84* 0.05 TCGA-FJ-A3Z7-01 11 45924345 45924345 G C MAPK8IP1 Missense_Mutation p.E343Q 0.25 tolerated(0.1) benign(0.073) TCGA-FJ-A3Z7-01 11 47267305 47267305 C T ACP2 Silent p.G126G 0.11 TCGA-FJ-A3Z7-01 11 51411989 51411989 C T OR4A5 Missense_Mutation p.R136Q 0.12 tolerated_low_confidence(0.78) benign(0.014) TCGA-FJ-A3Z7-01 11 55889867 55889867 G A OR8H3 Missense_Mutation p.D7N 0.20 tolerated(0.36) benign(0) TCGA-FJ-A3Z7-01 11 59283252 59283252 G T OR4D9 Silent p.L289L 0.12 TCGA-FJ-A3Z7-01 11 59283288 59283288 G A OR4D9 Silent p.L301L 0.12 TCGA-FJ-A3Z7-01 11 60901556 60901556 C G VPS37C Missense_Mutation p.E73Q 0.27 tolerated(0.07) probably_damaging(0.986) TCGA-FJ-A3Z7-01 11 63991404 63991404 C G TRPT1 Missense_Mutation p.E238Q 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.461) TCGA-FJ-A3Z7-01 11 64010754 64010754 C T FKBP2 Silent p.V85V 0.23 TCGA-FJ-A3Z7-01 11 64033975 64033975 C G PLCB3 Missense_Mutation p.T1122R 0.12 tolerated(0.72) probably_damaging(0.958) TCGA-FJ-A3Z7-01 11 64360326 64360326 G A SLC22A12 Missense_Mutation p.A160T 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-FJ-A3Z7-01 11 64665359 64665359 C T ATG2A Missense_Mutation p.G1649E 0.13 tolerated(0.23) benign(0.004) TCGA-FJ-A3Z7-01 11 64699064 64699064 A G PPP2R5B Missense_Mutation p.T327A 0.14 deleterious(0.01) probably_damaging(0.937) TCGA-FJ-A3Z7-01 11 6588563 6588563 C G DNHD1 Missense_Mutation p.L3942V 0.25 benign(0.025) TCGA-FJ-A3Z7-01 11 70201868 70201868 G A PPFIA1 Silent p.K813K 0.31 TCGA-FJ-A3Z7-01 11 71668300 71668300 G C RNF121 Missense_Mutation p.E31Q 0.18 tolerated(0.05) benign(0.289) TCGA-FJ-A3Z7-01 11 84027994 84027994 C T DLG2 Intron 0.43 TCGA-FJ-A3Z7-01 11 94731431 94731431 C T KDM4D Nonsense_Mutation p.R299* 0.18 TCGA-FJ-A3Z7-01 12 110002954 110002954 C T MMAB Silent p.K106K 0.24 TCGA-FJ-A3Z7-01 12 11090854 11090854 C T TAS2R14 Silent p.%3D 0.14 TCGA-FJ-A3Z7-01 12 114793706 114793706 G A TBX5 Silent p.I396I 0.16 TCGA-FJ-A3Z7-01 12 117175649 117175649 G A C12orf49 Silent p.L19L 0.20 TCGA-FJ-A3Z7-01 12 123830066 123830066 G T SBNO1 Missense_Mutation p.P97T 0.16 deleterious_low_confidence(0) benign(0.287) TCGA-FJ-A3Z7-01 12 133420656 133420656 C A CHFR Silent p.L612L 0.48 TCGA-FJ-A3Z7-01 12 14949871 14949871 C T WBP11 Missense_Mutation p.R86H 0.19 tolerated(0.13) unknown(0) TCGA-FJ-A3Z7-01 12 1599446 1599446 G A ERC1 3'UTR 0.50 TCGA-FJ-A3Z7-01 12 21624414 21624414 G C RECQL Missense_Mutation p.R539G 0.16 deleterious(0) probably_damaging(0.912) TCGA-FJ-A3Z7-01 12 26709193 26709193 C A ITPR2 Missense_Mutation p.R1646I 0.33 deleterious(0.03) benign(0.197) TCGA-FJ-A3Z7-01 12 26709224 26709224 C T ITPR2 Missense_Mutation p.E1636K 0.31 deleterious(0) possibly_damaging(0.682) TCGA-FJ-A3Z7-01 12 29598224 29598224 G C OVCH1 Silent p.V956V 0.28 TCGA-FJ-A3Z7-01 12 32133998 32133998 C G KIAA1551 Missense_Mutation p.Q37E 0.15 deleterious(0.01) possibly_damaging(0.631) TCGA-FJ-A3Z7-01 12 52470629 52470629 G A C12orf44 Silent p.Q104Q 0.33 TCGA-FJ-A3Z7-01 12 53216964 53216964 G C KRT79 Silent p.L401L 0.33 TCGA-FJ-A3Z7-01 12 53646663 53646663 C A MFSD5 Missense_Mutation p.S122Y 0.39 tolerated(0.08) benign(0.098) TCGA-FJ-A3Z7-01 12 54902260 54902260 C T NCKAP1L Missense_Mutation p.R151W 0.34 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3Z7-01 12 56495931 56495931 T A ERBB3 3'UTR 0.35 TCGA-FJ-A3Z7-01 12 70963557 70963557 C G PTPRB Missense_Mutation p.E1178Q 0.25 tolerated(0.1) benign(0.391) TCGA-FJ-A3Z7-01 12 80200075 80200075 G C PPP1R12A Missense_Mutation p.S565C 0.15 tolerated(0.08) benign(0.004) TCGA-FJ-A3Z7-01 12 81746948 81746948 C G PPFIA2 Silent p.T648T 0.22 TCGA-FJ-A3Z7-01 12 8234806 8234806 C G NECAP1 5'Flank 0.22 TCGA-FJ-A3Z7-01 12 9752379 9752379 G T KLRB1 Missense_Mutation p.S81R 0.25 deleterious(0.03) benign(0) TCGA-FJ-A3Z7-01 12 99028127 99028127 C G IKBIP Missense_Mutation p.E82Q 0.14 deleterious(0.01) possibly_damaging(0.732) TCGA-FJ-A3Z7-01 13 109777464 109777464 C G MYO16 Missense_Mutation p.I1158M 0.29 tolerated(0.09) benign(0.196) TCGA-FJ-A3Z7-01 13 113718683 113718683 C A MCF2L Missense_Mutation p.D185E 0.11 tolerated(1) benign(0.101) TCGA-FJ-A3Z7-01 13 25744470 25744470 C G AMER2 Missense_Mutation p.E430Q 0.26 tolerated(0.37) benign(0.283) TCGA-FJ-A3Z7-01 13 27216530 27216530 G A WASF3 Silent p.L41L 0.32 TCGA-FJ-A3Z7-01 13 28880827 28880827 G A FLT1 Missense_Mutation p.S1268L 0.31 tolerated(0.12) benign(0.003) TCGA-FJ-A3Z7-01 13 36445432 36445432 G A DCLK1 Missense_Mutation p.S290L 0.42 tolerated(0.39) possibly_damaging(0.504) TCGA-FJ-A3Z7-01 13 43872592 43872592 C T ENOX1 Missense_Mutation p.E446K 0.07 deleterious(0) probably_damaging(0.989) TCGA-FJ-A3Z7-01 13 46543642 46543642 C T ZC3H13 Missense_Mutation p.D1013N 0.13 unknown(0) TCGA-FJ-A3Z7-01 13 76124114 76124114 C T UCHL3 Silent p.V15V 0.41 TCGA-FJ-A3Z7-01 13 84453946 84453946 C T SLITRK1 Missense_Mutation p.R566K 0.16 tolerated(0.49) benign(0.001) TCGA-FJ-A3Z7-01 13 99948418 99948418 C G GPR183 Splice_Site 0.28 TCGA-FJ-A3Z7-01 14 101495970 101495970 C T MIR543 5'Flank 0.09 TCGA-FJ-A3Z7-01 14 20850380 20850380 G A TEP1 Intron 0.20 TCGA-FJ-A3Z7-01 14 23846484 23846484 G A CMTM5 Silent p.R8R 0.15 TCGA-FJ-A3Z7-01 14 24635333 24635333 G A IRF9 Missense_Mutation p.M370I 0.38 tolerated(0.33) benign(0.351) TCGA-FJ-A3Z7-01 14 24878489 24878489 G A NYNRIN Missense_Mutation p.D497N 0.19 tolerated_low_confidence(0.23) benign(0.015) TCGA-FJ-A3Z7-01 14 71374675 71374675 C G PCNX Silent p.L36L 0.32 TCGA-FJ-A3Z7-01 14 73967257 73967257 C G HEATR4 Missense_Mutation p.K761N 0.54 tolerated(0.22) benign(0.009) TCGA-FJ-A3Z7-01 14 74523874 74523874 C T CCDC176 Silent p.I497I 0.23 TCGA-FJ-A3Z7-01 14 94400964 94400964 G A ASB2 3'UTR 0.29 TCGA-FJ-A3Z7-01 15 101434029 101434029 C G ALDH1A3 Intron 0.26 TCGA-FJ-A3Z7-01 15 25585264 25585264 C T UBE3A Missense_Mutation p.M825I 0.19 deleterious(0.01) benign(0.309) TCGA-FJ-A3Z7-01 15 28511100 28511101 - C HERC2 Frame_Shift_Ins p.V540Gfs*50 0.12 TCGA-FJ-A3Z7-01 15 33927868 33927868 G A RYR3 Missense_Mutation p.E1077K 0.30 benign(0.242) TCGA-FJ-A3Z7-01 15 41793928 41793928 C T ITPKA Missense_Mutation p.R228C 0.28 deleterious(0.02) benign(0.181) TCGA-FJ-A3Z7-01 15 42143103 42143103 G A SPTBN5 Missense_Mutation p.P3624S 0.53 benign(0.044) TCGA-FJ-A3Z7-01 15 43784619 43784619 G A TP53BP1 Nonsense_Mutation p.Q19* 0.21 TCGA-FJ-A3Z7-01 15 43816516 43816516 G C MAP1A Missense_Mutation p.E949Q 0.14 benign(0.003) TCGA-FJ-A3Z7-01 15 54308011 54308011 T A UNC13C Missense_Mutation p.S971T 0.30 tolerated_low_confidence(0.65) benign(0.021) TCGA-FJ-A3Z7-01 15 72608198 72608198 C T CELF6 Silent p.K111K 0.30 TCGA-FJ-A3Z7-01 15 91423194 91423194 C T FURIN Silent p.I452I 0.23 TCGA-FJ-A3Z7-01 16 18823360 18823360 C G SMG1 Missense_Mutation p.A3571P 0.14 tolerated(0.05) possibly_damaging(0.723) TCGA-FJ-A3Z7-01 16 22558274 22558274 C G RP11-368J21.3 RNA 0.13 TCGA-FJ-A3Z7-01 16 22558291 22558291 C T RP11-368J21.3 RNA 0.14 TCGA-FJ-A3Z7-01 16 28489120 28489120 G C CLN3 Missense_Mutation p.L379V 0.19 tolerated(0.08) benign(0.047) TCGA-FJ-A3Z7-01 16 28507766 28507766 G C APOBR Missense_Mutation p.K468N 0.12 tolerated(0.14) possibly_damaging(0.607) TCGA-FJ-A3Z7-01 16 3140353 3140353 C T ZSCAN10 Missense_Mutation p.R306H 0.24 tolerated(0.48) benign(0.04) TCGA-FJ-A3Z7-01 16 3333838 3333838 C T ZNF263 Missense_Mutation p.S7F 0.23 tolerated(0.69) benign(0.001) TCGA-FJ-A3Z7-01 16 51173970 51173970 C T SALL1 Silent p.L721L 0.16 TCGA-FJ-A3Z7-01 16 51174338 51174338 C T SALL1 Missense_Mutation p.E599K 0.15 tolerated(0.26) benign(0.044) TCGA-FJ-A3Z7-01 16 58001085 58001085 C G CNGB1 Missense_Mutation p.E36Q 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.611) TCGA-FJ-A3Z7-01 16 67333481 67333481 G T KCTD19 Intron 0.26 TCGA-FJ-A3Z7-01 16 70796903 70796903 G A VAC14 Missense_Mutation p.H396Y 0.15 deleterious(0.02) benign(0.072) TCGA-FJ-A3Z7-01 16 824500 824500 G A MSLNL Missense_Mutation p.P581S 0.73 probably_damaging(0.998) TCGA-FJ-A3Z7-01 16 89809308 89809308 G A FANCA Missense_Mutation p.P1222L 0.31 deleterious(0) possibly_damaging(0.726) TCGA-FJ-A3Z7-01 16 90075252 90075252 C G DBNDD1 Missense_Mutation p.E107Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3Z7-01 16 9857275 9857275 G A GRIN2A Missense_Mutation p.R1376C 0.14 tolerated(0.05) probably_damaging(0.94) TCGA-FJ-A3Z7-01 17 27370279 27370279 G A PIPOX Silent p.V12V 0.17 TCGA-FJ-A3Z7-01 17 32646457 32646457 G C CCL8 5'UTR 0.11 TCGA-FJ-A3Z7-01 17 32955650 32955650 C T TMEM132E Missense_Mutation p.S266L 0.15 deleterious(0.03) benign(0.356) TCGA-FJ-A3Z7-01 17 36484690 36484690 C T GPR179 Missense_Mutation p.A1588T 0.31 tolerated(0.11) benign(0.293) TCGA-FJ-A3Z7-01 17 39846394 39846394 C T EIF1 Nonsense_Mutation p.Q84* 0.12 TCGA-FJ-A3Z7-01 17 39883363 39883363 C A HAP1 Nonsense_Mutation p.E437* 0.23 TCGA-FJ-A3Z7-01 17 41290786 41290786 C T NBR2 RNA 0.16 TCGA-FJ-A3Z7-01 17 42475934 42475934 C T GPATCH8 Missense_Mutation p.E1171K 0.16 tolerated(0.44) unknown(0) TCGA-FJ-A3Z7-01 17 45993797 45993797 C T SP2 Silent p.I120I 0.24 TCGA-FJ-A3Z7-01 17 46865191 46865191 G T TTLL6 Missense_Mutation p.A524D 0.12 deleterious(0.01) possibly_damaging(0.843) TCGA-FJ-A3Z7-01 17 4905823 4905823 C G KIF1C Missense_Mutation p.S165C 0.69 deleterious(0) benign(0.068) TCGA-FJ-A3Z7-01 17 54450093 54450093 G C ANKFN1 Missense_Mutation p.E233Q 0.18 tolerated(0.58) benign(0.001) TCGA-FJ-A3Z7-01 17 57262920 57262920 G A PRR11 Silent p.L133L 0.17 TCGA-FJ-A3Z7-01 17 57684430 57684430 G C DHX40 Missense_Mutation p.R746T 0.19 deleterious(0) benign(0.105) TCGA-FJ-A3Z7-01 17 61615899 61615899 C G KCNH6 Missense_Mutation p.F610L 0.50 tolerated(0.06) possibly_damaging(0.463) TCGA-FJ-A3Z7-01 17 61784042 61784042 C T STRADA Missense_Mutation p.E271K 0.16 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3Z7-01 17 64961111 64961111 C T CACNG4 Silent p.I28I 0.28 TCGA-FJ-A3Z7-01 17 65733721 65733721 G T NOL11 Missense_Mutation p.G439V 0.32 tolerated(0.15) possibly_damaging(0.646) TCGA-FJ-A3Z7-01 17 65908180 65908180 G C BPTF Missense_Mutation p.E1394Q 0.24 possibly_damaging(0.596) TCGA-FJ-A3Z7-01 17 7574021 7574021 C A TP53 Nonsense_Mutation p.E336* 0.68 TCGA-FJ-A3Z7-01 17 76419939 76419939 G C DNAH17 3'UTR 0.33 TCGA-FJ-A3Z7-01 17 96938 96938 C T RPH3AL Missense_Mutation p.E193K 0.14 tolerated(0.38) benign(0.002) TCGA-FJ-A3Z7-01 18 21485566 21485566 G A LAMA3 Missense_Mutation p.M2232I 0.31 benign(0) TCGA-FJ-A3Z7-01 18 2544739 2544739 A C METTL4 Missense_Mutation p.F365C 0.21 deleterious(0) possibly_damaging(0.603) TCGA-FJ-A3Z7-01 18 25593832 25593832 C G CDH2 Missense_Mutation p.E72Q 0.28 tolerated(0.33) benign(0.138) TCGA-FJ-A3Z7-01 18 3456665 3456665 C G TGIF1 Intron 0.31 TCGA-FJ-A3Z7-01 18 39584503 39584503 G A PIK3C3 Missense_Mutation p.E390K 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-FJ-A3Z7-01 18 44030341 44030341 C T RNF165 Missense_Mutation p.S233F 0.17 deleterious(0.04) possibly_damaging(0.878) TCGA-FJ-A3Z7-01 18 54688024 54688024 G A WDR7 Missense_Mutation p.D1405N 0.20 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3Z7-01 18 77659691 77659691 G A KCNG2 Missense_Mutation p.E426K 0.50 tolerated(0.69) benign(0.041) TCGA-FJ-A3Z7-01 19 12792434 12792434 G T DHPS Missense_Mutation p.F49L 0.24 tolerated(0.28) benign(0.004) TCGA-FJ-A3Z7-01 19 12856314 12856314 G T ASNA1 Missense_Mutation p.A145S 0.25 deleterious(0.01) possibly_damaging(0.887) TCGA-FJ-A3Z7-01 19 12863496 12863496 A T BEST2 Missense_Mutation p.K30N 0.37 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3Z7-01 19 14000730 14000730 C G C19orf57 Missense_Mutation p.Q313H 0.42 tolerated(0.16) possibly_damaging(0.891) TCGA-FJ-A3Z7-01 19 15338451 15338451 C G EPHX3 Missense_Mutation p.E294Q 0.15 tolerated(0.31) benign(0.006) TCGA-FJ-A3Z7-01 19 18174691 18174691 C G IL12RB1 Missense_Mutation p.S538T 0.09 tolerated(0.12) benign(0.037) TCGA-FJ-A3Z7-01 19 21588052 21588052 T G ZNF493 Missense_Mutation p.F51C 0.13 deleterious(0.04) possibly_damaging(0.85) TCGA-FJ-A3Z7-01 19 34685411 34685411 G A LSM14A Silent p.P50P 0.15 TCGA-FJ-A3Z7-01 19 36212267 36212267 C T KMT2B Missense_Mutation p.A673V 0.45 probably_damaging(0.935) TCGA-FJ-A3Z7-01 19 36727428 36727428 C G ZNF146 Nonsense_Mutation p.S29* 0.24 TCGA-FJ-A3Z7-01 19 36728021 36728021 C G ZNF146 Missense_Mutation p.L227V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-FJ-A3Z7-01 19 37698029 37698029 C G ZNF585B 5'UTR 0.14 TCGA-FJ-A3Z7-01 19 37698069 37698069 C G ZNF585B 5'UTR 0.18 TCGA-FJ-A3Z7-01 19 41770565 41770565 G C HNRNPUL1 Missense_Mutation p.E53Q 0.26 tolerated(0.39) unknown(0) TCGA-FJ-A3Z7-01 19 42930623 42930623 C T LIPE Missense_Mutation p.E227K 0.56 deleterious_low_confidence(0.01) benign(0.257) TCGA-FJ-A3Z7-01 19 4548448 4548448 C G SEMA6B Silent p.L427L 0.48 TCGA-FJ-A3Z7-01 19 56382202 56382202 C T NLRP4 Silent p.F788F 0.54 TCGA-FJ-A3Z7-01 19 57646264 57646264 T G ZIM3 3'UTR 0.16 TCGA-FJ-A3Z7-01 19 6731089 6731089 C T GPR108 Missense_Mutation p.V490M 0.21 deleterious(0) possibly_damaging(0.743) TCGA-FJ-A3Z7-01 19 7083769 7083769 G A ZNF557 3'UTR 0.42 TCGA-FJ-A3Z7-01 1 110456967 110456967 G A CSF1 Missense_Mutation p.M42I 0.18 tolerated(0.65) benign(0.01) TCGA-FJ-A3Z7-01 1 112246033 112246033 C A RAP1A Missense_Mutation p.Q87K 0.20 tolerated(0.26) benign(0.04) TCGA-FJ-A3Z7-01 1 120930097 120930097 G A FCGR1B Silent p.C168C 0.12 TCGA-FJ-A3Z7-01 1 149859034 149859034 G C HIST2H2AB 3'UTR 0.18 TCGA-FJ-A3Z7-01 1 150482377 150482377 C T ECM1 Missense_Mutation p.S95L 0.18 tolerated_low_confidence(0.32) benign(0.001) TCGA-FJ-A3Z7-01 1 150676596 150676596 G A HORMAD1 Nonsense_Mutation p.Q316* 0.06 TCGA-FJ-A3Z7-01 1 152882824 152882824 A T IVL Missense_Mutation p.E184V 0.27 deleterious(0.04) unknown(0) TCGA-FJ-A3Z7-01 1 153744827 153744827 C G INTS3 Missense_Mutation p.S911C 0.11 deleterious(0.01) benign(0.416) TCGA-FJ-A3Z7-01 1 153906649 153906649 C T DENND4B Missense_Mutation p.R968Q 0.27 tolerated(0.08) benign(0) TCGA-FJ-A3Z7-01 1 153910053 153910053 C G DENND4B Missense_Mutation p.E715Q 0.17 deleterious(0.05) probably_damaging(0.909) TCGA-FJ-A3Z7-01 1 153910278 153910278 C T DENND4B Missense_Mutation p.G676E 0.13 tolerated(0.18) probably_damaging(0.947) TCGA-FJ-A3Z7-01 1 156047421 156047421 C T MEX3A Silent p.P169P 0.37 TCGA-FJ-A3Z7-01 1 156521553 156521553 G A IQGAP3 Missense_Mutation p.P560S 0.34 tolerated(0.52) benign(0.005) TCGA-FJ-A3Z7-01 1 161160867 161160867 C G ADAMTS4 3'UTR 0.24 TCGA-FJ-A3Z7-01 1 1685647 1685647 C T NADK Missense_Mutation p.G460E 0.42 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z7-01 1 16913590 16913590 C G NBPF1 Missense_Mutation p.E245Q 0.16 deleterious(0.03) benign(0) TCGA-FJ-A3Z7-01 1 171506532 171506532 G A PRRC2C Silent p.L806L 0.14 TCGA-FJ-A3Z7-01 1 172410751 172410751 C G PIGC 3'UTR 0.08 TCGA-FJ-A3Z7-01 1 172410831 172410831 C G PIGC 3'UTR 0.05 TCGA-FJ-A3Z7-01 1 172410895 172410895 C T PIGC Missense_Mutation p.E290K 0.08 tolerated(0.09) benign(0.069) TCGA-FJ-A3Z7-01 1 174247872 174247872 C G RABGAP1L Missense_Mutation p.F426L 0.31 tolerated(0.1) benign(0.143) TCGA-FJ-A3Z7-01 1 203134960 203134960 G A ADORA1 Missense_Mutation p.D305N 0.29 tolerated(0.51) benign(0.021) TCGA-FJ-A3Z7-01 1 204412694 204412697 ACTG - PIK3C2B Frame_Shift_Del p.Q966Sfs*20 0.15 TCGA-FJ-A3Z7-01 1 208227794 208227794 G C PLXNA2 Missense_Mutation p.T943R 0.23 deleterious(0) benign(0.178) TCGA-FJ-A3Z7-01 1 215799105 215799105 C A USH2A 3'UTR 0.18 TCGA-FJ-A3Z7-01 1 216348659 216348659 C T USH2A Missense_Mutation p.R1521H 0.24 probably_damaging(0.957) TCGA-FJ-A3Z7-01 1 22033020 22033020 C G USP48 Missense_Mutation p.K717N 0.33 deleterious(0) probably_damaging(0.979) TCGA-FJ-A3Z7-01 1 22191497 22191497 C G HSPG2 Missense_Mutation p.D1489H 0.50 probably_damaging(0.999) TCGA-FJ-A3Z7-01 1 222696178 222696178 G A HHIPL2 Missense_Mutation p.S647F 0.12 tolerated(0.42) benign(0.002) TCGA-FJ-A3Z7-01 1 227618492 227618492 G T CTD-2090I13.1 RNA 0.18 TCGA-FJ-A3Z7-01 1 228464926 228464926 C T OBSCN Silent p.L2597L 0.43 TCGA-FJ-A3Z7-01 1 23111208 23111208 G A EPHB2 Silent p.V150V 0.10 TCGA-FJ-A3Z7-01 1 23380296 23380296 G A KDM1A Missense_Mutation p.E252K 0.17 deleterious(0.02) benign(0.075) TCGA-FJ-A3Z7-01 1 247694861 247694861 G A OR2C3 Missense_Mutation p.A318V 0.26 tolerated_low_confidence(0.19) benign(0.092) TCGA-FJ-A3Z7-01 1 24857725 24857725 C G RCAN3 Silent p.L71L 0.08 TCGA-FJ-A3Z7-01 1 25729100 25729100 C T RHCE Missense_Mutation p.S158N 0.16 tolerated(0.44) benign(0.005) TCGA-FJ-A3Z7-01 1 26073233 26073233 G T MAN1C1 Nonsense_Mutation p.E238* 0.38 TCGA-FJ-A3Z7-01 1 33058581 33058581 C T ZBTB8A Nonsense_Mutation p.Q17* 0.40 TCGA-FJ-A3Z7-01 1 33272134 33272134 T A YARS Silent p.V153V 0.16 TCGA-FJ-A3Z7-01 1 40131908 40131908 G A NT5C1A Missense_Mutation p.P46S 0.05 deleterious(0) probably_damaging(0.94) TCGA-FJ-A3Z7-01 1 43891314 43891314 G A SZT2 Splice_Site p.X938_splice 0.07 TCGA-FJ-A3Z7-01 1 47716863 47716863 G A STIL Missense_Mutation p.S1271L 0.53 deleterious(0.03) probably_damaging(0.983) TCGA-FJ-A3Z7-01 1 53932520 53932520 G C DMRTB1 3'UTR 0.67 TCGA-FJ-A3Z7-01 1 5926434 5926434 A G NPHP4 Missense_Mutation p.S1215P 0.15 deleterious(0.02) benign(0.173) TCGA-FJ-A3Z7-01 1 6579662 6579662 C T NOL9 3'Flank 0.16 TCGA-FJ-A3Z7-01 1 75602828 75602828 C T LHX8 Missense_Mutation p.S50L 0.20 tolerated(0.07) benign(0.129) TCGA-FJ-A3Z7-01 1 86172186 86172186 C G ZNHIT6 Missense_Mutation p.E221Q 0.36 deleterious(0.02) possibly_damaging(0.877) TCGA-FJ-A3Z7-01 1 92441909 92441909 C A BRDT Missense_Mutation p.P178T 0.12 tolerated(0.19) benign(0.018) TCGA-FJ-A3Z7-01 1 94027918 94027918 C G BCAR3 Missense_Mutation p.L786F 0.50 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3Z7-01 20 17599273 17599273 C T RRBP1 Missense_Mutation p.E810K 0.29 deleterious(0) possibly_damaging(0.502) TCGA-FJ-A3Z7-01 20 19566112 19566112 G C SLC24A3 Missense_Mutation p.G179A 0.20 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z7-01 20 2320505 2320505 G A TGM3 Silent p.L602L 0.28 TCGA-FJ-A3Z7-01 20 31654681 31654681 G A BPIFB3 Missense_Mutation p.E326K 0.23 tolerated(0.36) benign(0.057) TCGA-FJ-A3Z7-01 20 39741425 39741425 G A TOP1 Missense_Mutation p.E438K 0.12 deleterious(0) probably_damaging(0.994) TCGA-FJ-A3Z7-01 20 44692158 44692158 C T NCOA5 Missense_Mutation p.E331K 0.10 tolerated(0.07) possibly_damaging(0.616) TCGA-FJ-A3Z7-01 20 47887564 47887564 G C ZNFX1 Missense_Mutation p.S262C 0.19 tolerated(0.06) probably_damaging(0.931) TCGA-FJ-A3Z7-01 20 57828035 57828035 C G ZNF831 Missense_Mutation p.L1344V 0.30 tolerated(0.31) benign(0.012) TCGA-FJ-A3Z7-01 20 57829687 57829687 C T ZNF831 Silent p.A1641A 0.35 TCGA-FJ-A3Z7-01 20 5923084 5923084 T C TRMT6 Missense_Mutation p.K339R 0.60 tolerated(0.4) benign(0.032) TCGA-FJ-A3Z7-01 20 60704841 60704841 G A LSM14B Missense_Mutation p.G143E 0.45 deleterious(0.02) possibly_damaging(0.743) TCGA-FJ-A3Z7-01 20 60908513 60908513 C T LAMA5 Missense_Mutation p.A1016T 0.14 benign(0.391) TCGA-FJ-A3Z7-01 20 62521410 62521410 G A TPD52L2 3'UTR 0.88 TCGA-FJ-A3Z7-01 21 32559388 32559388 G A TIAM1 Missense_Mutation p.S864F 0.12 deleterious(0.03) possibly_damaging(0.675) TCGA-FJ-A3Z7-01 21 33296930 33296930 C T HUNK Silent p.L138L 0.21 TCGA-FJ-A3Z7-01 21 35209485 35209485 C T ITSN1 Intron 0.53 TCGA-FJ-A3Z7-01 21 37741729 37741729 C T MORC3 Missense_Mutation p.S688F 0.57 deleterious(0.01) benign(0.197) TCGA-FJ-A3Z7-01 21 38461129 38461129 G T TTC3 Missense_Mutation p.K123N 0.18 deleterious(0) possibly_damaging(0.821) TCGA-FJ-A3Z7-01 21 43161677 43161677 C T RIPK4 Missense_Mutation p.R559Q 0.09 tolerated(0.3) possibly_damaging(0.559) TCGA-FJ-A3Z7-01 21 45837924 45837924 C T TRPM2 Silent p.L1087L 0.09 TCGA-FJ-A3Z7-01 21 45837945 45837945 C G TRPM2 Missense_Mutation p.I1094M 0.09 deleterious(0.01) possibly_damaging(0.526) TCGA-FJ-A3Z7-01 22 23657726 23657726 C T BCR 3'UTR 0.14 TCGA-FJ-A3Z7-01 22 29091097 29091119 ACCCTTTCATATTCATACCTTTC - CHEK2 Splice_Site p.X500_splice 0.13 TCGA-FJ-A3Z7-01 22 29091828 29091828 C T CHEK2 Missense_Mutation p.E420K 0.22 tolerated(0.13) probably_damaging(0.913) TCGA-FJ-A3Z7-01 22 29092917 29092917 G T CHEK2 Nonsense_Mutation p.S399* 0.22 TCGA-FJ-A3Z7-01 22 29092969 29092969 G A CHEK2 Missense_Mutation p.H382Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3Z7-01 22 29940524 29940524 G C THOC5 Nonsense_Mutation p.Y55* 0.19 TCGA-FJ-A3Z7-01 22 30951254 30951254 C G GAL3ST1 Missense_Mutation p.E320Q 0.35 deleterious(0.05) probably_damaging(0.925) TCGA-FJ-A3Z7-01 22 36681818 36681818 C A MYH9 Silent p.A1720A 0.20 TCGA-FJ-A3Z7-01 22 36695011 36695011 G A MYH9 Silent p.L1018L 0.26 TCGA-FJ-A3Z7-01 22 37868558 37868558 G A MFNG Silent p.L274L 0.20 TCGA-FJ-A3Z7-01 22 38474358 38474358 C A SLC16A8 3'UTR 0.14 TCGA-FJ-A3Z7-01 2 101584864 101584864 C T NPAS2 Silent p.F343F 0.19 TCGA-FJ-A3Z7-01 2 103059778 103059778 G A IL18RAP Silent p.A305A 0.15 TCGA-FJ-A3Z7-01 2 10799346 10799346 C G NOL10 Missense_Mutation p.L236F 0.24 deleterious(0) possibly_damaging(0.796) TCGA-FJ-A3Z7-01 2 120833065 120833065 C G EPB41L5 Missense_Mutation p.L141V 0.36 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3Z7-01 2 128520696 128520696 C G WDR33 Missense_Mutation p.D222H 0.18 deleterious(0) unknown(0) TCGA-FJ-A3Z7-01 2 152394433 152394433 G A NEB Missense_Mutation p.R7019C 0.18 probably_damaging(0.959) TCGA-FJ-A3Z7-01 2 158397605 158397605 C G ACVR1C Missense_Mutation p.G408R 0.15 tolerated(0.07) benign(0.091) TCGA-FJ-A3Z7-01 2 16082556 16082556 G A MYCN Missense_Mutation p.E124K 0.52 deleterious(0.03) probably_damaging(0.974) TCGA-FJ-A3Z7-01 2 161056633 161056633 G A ITGB6 5'UTR 0.25 TCGA-FJ-A3Z7-01 2 170502386 170502386 G A CCDC173 Nonsense_Mutation p.Q542* 0.23 TCGA-FJ-A3Z7-01 2 179471896 179471896 C T TTN Nonsense_Mutation p.W17811* 0.15 TCGA-FJ-A3Z7-01 2 179639030 179639030 G C TTN Missense_Mutation p.Q2321E 0.16 TCGA-FJ-A3Z7-01 2 186673740 186673740 G C FSIP2 Silent p.L6658L 0.19 TCGA-FJ-A3Z7-01 2 187514604 187514604 C G ITGAV Missense_Mutation p.I463M 0.10 deleterious(0.03) benign(0.418) TCGA-FJ-A3Z7-01 2 203825996 203825996 G C CARF Missense_Mutation p.E227Q 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-FJ-A3Z7-01 2 203826043 203826043 G A CARF Silent p.Q242Q 0.32 TCGA-FJ-A3Z7-01 2 207009731 207009731 C T NDUFS1 Missense_Mutation p.V267I 0.15 deleterious(0.02) benign(0.071) TCGA-FJ-A3Z7-01 2 219129789 219129789 C G AAMP Missense_Mutation p.D395H 0.17 deleterious(0.05) possibly_damaging(0.747) TCGA-FJ-A3Z7-01 2 219209680 219209680 G A PNKD Silent p.L378L 0.24 TCGA-FJ-A3Z7-01 2 219544683 219544683 C A STK36 Missense_Mutation p.A339D 0.15 tolerated(0.06) benign(0.424) TCGA-FJ-A3Z7-01 2 219679343 219679343 C T CYP27A1 Missense_Mutation p.H447Y 0.14 tolerated(0.12) benign(0.005) TCGA-FJ-A3Z7-01 2 224463499 224463499 G A SCG2 Missense_Mutation p.P168S 0.17 tolerated(0.79) benign(0.383) TCGA-FJ-A3Z7-01 2 230656630 230656630 C A TRIP12 Missense_Mutation p.S1381I 0.15 tolerated(0.05) benign(0.109) TCGA-FJ-A3Z7-01 2 232326368 232326368 C T NCL Missense_Mutation p.D166N 0.45 unknown(0) TCGA-FJ-A3Z7-01 2 237396819 237396819 T C IQCA1 Missense_Mutation p.S158G 0.19 tolerated(0.46) benign(0.001) TCGA-FJ-A3Z7-01 2 238726129 238726129 C T RBM44 Silent p.H190H 0.23 TCGA-FJ-A3Z7-01 2 239167208 239167208 C T PER2 Missense_Mutation p.E569K 0.19 deleterious(0.03) possibly_damaging(0.71) TCGA-FJ-A3Z7-01 2 26437925 26437925 C G HADHA Missense_Mutation p.E266Q 0.33 tolerated(1) benign(0.004) TCGA-FJ-A3Z7-01 2 27258520 27258520 G A TMEM214 Silent p.A187A 0.31 TCGA-FJ-A3Z7-01 2 27447627 27447627 G A CAD Silent p.L423L 0.16 TCGA-FJ-A3Z7-01 2 29297062 29297062 C G C2orf71 Missense_Mutation p.L22F 0.12 tolerated(0.94) benign(0.023) TCGA-FJ-A3Z7-01 2 29366627 29366627 C G CLIP4 Missense_Mutation p.P234R 0.17 deleterious(0.03) probably_damaging(1) TCGA-FJ-A3Z7-01 2 37450318 37450318 G A CEBPZ Missense_Mutation p.H626Y 0.45 deleterious(0.02) possibly_damaging(0.864) TCGA-FJ-A3Z7-01 2 68607517 68607517 G C PLEK Missense_Mutation p.E34Q 0.52 tolerated(0.28) probably_damaging(0.949) TCGA-FJ-A3Z7-01 2 74834257 74834257 G A M1AP Nonsense_Mutation p.Q174* 0.15 TCGA-FJ-A3Z7-01 2 85066332 85066332 C G TRABD2A Missense_Mutation p.R262P 0.27 deleterious(0) probably_damaging(0.993) TCGA-FJ-A3Z7-01 2 85808869 85808869 C G VAMP8 3'UTR 0.55 TCGA-FJ-A3Z7-01 2 89111111 89111111 C A MIR4436A 5'Flank 0.24 TCGA-FJ-A3Z7-01 2 95815563 95815563 G A ZNF514 Nonsense_Mutation p.Q223* 0.20 TCGA-FJ-A3Z7-01 3 108782032 108782032 C T MORC1 Missense_Mutation p.E288K 0.14 deleterious(0) probably_damaging(0.992) TCGA-FJ-A3Z7-01 3 118621311 118621311 C G IGSF11 3'UTR 0.20 TCGA-FJ-A3Z7-01 3 119562103 119562103 T A GSK3B Silent p.S411S 0.31 TCGA-FJ-A3Z7-01 3 127981020 127981020 G A EEFSEC Missense_Mutation p.E192K 0.11 tolerated(0.06) benign(0.1) TCGA-FJ-A3Z7-01 3 129034635 129034635 C G H1FX Missense_Mutation p.K37N 0.25 deleterious(0) probably_damaging(0.991) TCGA-FJ-A3Z7-01 3 137964026 137964026 G A ARMC8 Splice_Site p.X364_splice 0.25 TCGA-FJ-A3Z7-01 3 151112625 151112625 C T MED12L Silent p.L1895L 0.44 TCGA-FJ-A3Z7-01 3 153202291 153202291 T G C3orf79 5'UTR 0.12 TCGA-FJ-A3Z7-01 3 160141236 160141236 G A SMC4 Missense_Mutation p.M681I 0.38 tolerated(0.47) benign(0.024) TCGA-FJ-A3Z7-01 3 19479720 19479720 C T KCNH8 Silent p.G414G 0.10 TCGA-FJ-A3Z7-01 3 195518308 195518308 C G MUC4 Missense_Mutation p.G48A 0.17 unknown(0) TCGA-FJ-A3Z7-01 3 196613274 196613274 G A SENP5 Missense_Mutation p.D408N 0.20 tolerated(0.06) possibly_damaging(0.848) TCGA-FJ-A3Z7-01 3 32188164 32188164 C G GPD1L Missense_Mutation p.P186A 0.24 deleterious(0.02) benign(0.005) TCGA-FJ-A3Z7-01 3 38601887 38601887 C T SCN5A Silent p.P1332P 0.29 TCGA-FJ-A3Z7-01 3 38616877 38616877 G A SCN5A Missense_Mutation p.R1193W 0.50 deleterious(0.01) possibly_damaging(0.814) TCGA-FJ-A3Z7-01 3 42702987 42702987 G A ZBTB47 Missense_Mutation p.C495Y 0.40 deleterious(0) unknown(0) TCGA-FJ-A3Z7-01 3 47887699 47887699 G C DHX30 Missense_Mutation p.Q379H 0.34 tolerated(0.28) benign(0) TCGA-FJ-A3Z7-01 3 47956392 47956392 C G MAP4 Silent p.P638P 0.35 TCGA-FJ-A3Z7-01 3 49742439 49742439 T C RNF123 Missense_Mutation p.V661A 0.57 tolerated(0.6) benign(0.013) TCGA-FJ-A3Z7-01 3 52436887 52436887 C G BAP1 Missense_Mutation p.E631Q 0.16 deleterious(0.02) possibly_damaging(0.886) TCGA-FJ-A3Z7-01 3 52939153 52939153 C G SFMBT1 Nonstop_Mutation p.*867Sext*6 0.59 TCGA-FJ-A3Z7-01 3 96706766 96706766 G A EPHA6 Missense_Mutation p.G348E 0.53 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z7-01 4 100130048 100130048 C G ADH6 Missense_Mutation p.G202A 0.17 deleterious(0) probably_damaging(0.951) TCGA-FJ-A3Z7-01 4 106155204 106155204 G A TET2 Silent p.Q35Q 0.24 TCGA-FJ-A3Z7-01 4 1235189 1235189 C G CTBP1 Intron 0.37 TCGA-FJ-A3Z7-01 4 153690793 153690793 T C TIGD4 Missense_Mutation p.D455G 0.25 tolerated(0.12) possibly_damaging(0.477) TCGA-FJ-A3Z7-01 4 177058703 177058703 C T WDR17 Nonsense_Mutation p.R458* 0.25 TCGA-FJ-A3Z7-01 4 178256885 178256885 G C NEIL3 Missense_Mutation p.E108Q 0.35 tolerated(0.39) benign(0.01) TCGA-FJ-A3Z7-01 4 183603124 183603124 C T TENM3 Silent p.S664S 0.24 TCGA-FJ-A3Z7-01 4 1902964 1902964 C G WHSC1 Missense_Mutation p.P195A 0.10 tolerated(0.11) benign(0.014) TCGA-FJ-A3Z7-01 4 3237489 3237489 C T HTT Silent p.L2923L 0.23 TCGA-FJ-A3Z7-01 4 37903928 37903928 C T TBC1D1 Missense_Mutation p.S71F 0.16 deleterious(0.01) benign(0.282) TCGA-FJ-A3Z7-01 4 40123292 40123292 C T N4BP2 Silent p.N1187N 0.38 TCGA-FJ-A3Z7-01 4 419731 419731 G T ABCA11P RNA 0.22 TCGA-FJ-A3Z7-01 4 4419001 4419001 G A NSG1 Missense_Mutation p.A133T 0.15 tolerated(1) benign(0.001) TCGA-FJ-A3Z7-01 4 62935824 62935824 C T LPHN3 Intron 0.18 TCGA-FJ-A3Z7-01 4 69101948 69101948 G A TMPRSS11B Missense_Mutation p.S54F 0.18 tolerated(0.36) benign(0.096) TCGA-FJ-A3Z7-01 4 71888182 71888182 C T DCK Silent p.L102L 0.18 TCGA-FJ-A3Z7-01 4 85742700 85742700 G A WDFY3 Silent p.H376H 0.18 TCGA-FJ-A3Z7-01 4 88732815 88732815 A C IBSP Missense_Mutation p.E236A 0.18 tolerated(0.05) benign(0.026) TCGA-FJ-A3Z7-01 4 96761262 96761262 T A PDHA2 5'UTR 0.31 TCGA-FJ-A3Z7-01 5 118788291 118788291 C G HSD17B4 5'UTR 0.26 TCGA-FJ-A3Z7-01 5 13885116 13885116 G A DNAH5 Missense_Mutation p.H989Y 0.18 benign(0.152) TCGA-FJ-A3Z7-01 5 140215764 140215764 C T PCDHA7 Missense_Mutation p.A599V 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.536) TCGA-FJ-A3Z7-01 5 140537703 140537703 T C PCDHB17 3'UTR 0.22 TCGA-FJ-A3Z7-01 5 150097924 150097924 G C DCTN4 Missense_Mutation p.L336V 0.58 tolerated(0.18) benign(0.327) TCGA-FJ-A3Z7-01 5 167517748 167517748 T A TENM2 Missense_Mutation p.M562K 0.24 tolerated(0.42) benign(0.004) TCGA-FJ-A3Z7-01 5 167631486 167631486 C G TENM2 Missense_Mutation p.C1228W 0.18 deleterious(0) probably_damaging(0.976) TCGA-FJ-A3Z7-01 5 169122827 169122827 C G DOCK2 Silent p.L288L 0.18 TCGA-FJ-A3Z7-01 5 32712404 32712404 C G NPR3 Silent p.L174L 0.08 TCGA-FJ-A3Z7-01 5 35867471 35867471 G C IL7R Missense_Mutation p.E95D 0.10 deleterious(0) benign(0.011) TCGA-FJ-A3Z7-01 5 41840601 41840601 C T OXCT1 Silent p.R228R 0.16 TCGA-FJ-A3Z7-01 5 64814433 64814433 G A CENPK Missense_Mutation p.P227S 0.18 deleterious(0) probably_damaging(0.987) TCGA-FJ-A3Z7-01 5 65349677 65349677 C T ERBB2IP Missense_Mutation p.S844F 0.27 deleterious(0) benign(0.181) TCGA-FJ-A3Z7-01 5 65349989 65349994 CAAATC TAAAATG ERBB2IP Nonsense_Mutation p.S948Lfs*3 0.17 TCGA-FJ-A3Z7-01 6 106552838 106552838 G A PRDM1 Missense_Mutation p.R268H 0.10 tolerated(0.16) benign(0.002) TCGA-FJ-A3Z7-01 6 107780282 107780282 G T PDSS2 Missense_Mutation p.R70S 0.14 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3Z7-01 6 107780434 107780434 G A PDSS2 Missense_Mutation p.S19F 0.12 tolerated(0.22) benign(0) TCGA-FJ-A3Z7-01 6 111628632 111628632 G A REV3L Nonsense_Mutation p.Q3062* 0.23 TCGA-FJ-A3Z7-01 6 11185604 11185604 G A NEDD9 Nonsense_Mutation p.Q766* 0.08 TCGA-FJ-A3Z7-01 6 116914146 116914146 G C RWDD1 Missense_Mutation p.G205A 0.15 deleterious(0.01) possibly_damaging(0.637) TCGA-FJ-A3Z7-01 6 128291416 128291416 G A PTPRK Missense_Mutation p.R1433C 0.22 deleterious(0) possibly_damaging(0.804) TCGA-FJ-A3Z7-01 6 138413346 138413346 G C PERP Missense_Mutation p.L139V 0.20 tolerated(0.17) possibly_damaging(0.487) TCGA-FJ-A3Z7-01 6 15663055 15663055 A T DTNBP1 Missense_Mutation p.F16I 0.12 deleterious(0.02) benign(0.003) TCGA-FJ-A3Z7-01 6 170697422 170697423 - CG FAM120B Frame_Shift_Ins p.G779Afs*8 0.27 TCGA-FJ-A3Z7-01 6 26225674 26225674 G A HIST1H3E Missense_Mutation p.E98K 0.45 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-FJ-A3Z7-01 6 26234919 26234919 G C HIST1H1D Missense_Mutation p.I81M 0.31 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3Z7-01 6 28540437 28540437 C T SCAND3 Missense_Mutation p.E1077K 0.21 deleterious(0.02) benign(0.321) TCGA-FJ-A3Z7-01 6 29913231 29913231 G C HLA-A Nonstop_Mutation p.*366Sext*8 0.23 TCGA-FJ-A3Z7-01 6 29913257 29913257 G C HLA-A 3'UTR 0.26 TCGA-FJ-A3Z7-01 6 31500659 31500659 C T DDX39B Silent p.T255T 0.26 TCGA-FJ-A3Z7-01 6 31503186 31503186 C G DDX39B Missense_Mutation p.L231F 0.18 tolerated(0.08) benign(0.159) TCGA-FJ-A3Z7-01 6 31504208 31504208 C G DDX39B Intron 0.18 TCGA-FJ-A3Z7-01 6 32053791 32053791 C T TNXB Missense_Mutation p.E962K 0.41 probably_damaging(0.979) TCGA-FJ-A3Z7-01 6 33258524 33258524 G C PFDN6 Missense_Mutation p.E98Q 0.21 deleterious(0.03) possibly_damaging(0.596) TCGA-FJ-A3Z7-01 6 4056655 4056655 G C PRPF4B Missense_Mutation p.R856P 0.20 deleterious(0) unknown(0) TCGA-FJ-A3Z7-01 6 55406532 55406532 G T HMGCLL1 Missense_Mutation p.P128T 0.18 deleterious(0) probably_damaging(0.971) TCGA-FJ-A3Z7-01 6 6347454 6347454 G A SNAPC5P1 RNA 0.24 TCGA-FJ-A3Z7-01 6 86200279 86200279 G A NT5E Missense_Mutation p.D422N 0.28 deleterious(0) probably_damaging(0.995) TCGA-FJ-A3Z7-01 6 88321837 88321837 C G ORC3 Silent p.L248L 0.25 TCGA-FJ-A3Z7-01 6 90045107 90045107 C G UBE2J1 Missense_Mutation p.D158H 0.27 tolerated(0.13) benign(0.083) TCGA-FJ-A3Z7-01 6 90353715 90353715 C G MDN1 3'UTR 0.36 TCGA-FJ-A3Z7-01 7 105672957 105672957 C T CDHR3 Silent p.V824V 0.41 TCGA-FJ-A3Z7-01 7 107315425 107315425 G A SLC26A4 Silent p.V212V 0.24 TCGA-FJ-A3Z7-01 7 113518587 113518587 C T PPP1R3A Missense_Mutation p.E854K 0.20 tolerated(0.86) benign(0.003) TCGA-FJ-A3Z7-01 7 142149013 142149013 G A TRBV5-5 Silent p.R86R 0.19 TCGA-FJ-A3Z7-01 7 149152502 149152502 C T ZNF777 Missense_Mutation p.M204I 0.19 tolerated(0.41) benign(0.113) TCGA-FJ-A3Z7-01 7 157926662 157926662 G C PTPRN2 Silent p.L421L 0.27 TCGA-FJ-A3Z7-01 7 158718985 158718985 C G WDR60 Missense_Mutation p.Q789E 0.14 tolerated(0.1) benign(0.001) TCGA-FJ-A3Z7-01 7 21599258 21599258 G T DNAH11 Nonsense_Mutation p.E244* 0.41 TCGA-FJ-A3Z7-01 7 2583404 2583404 G A BRAT1 Missense_Mutation p.S208F 0.22 deleterious(0) possibly_damaging(0.705) TCGA-FJ-A3Z7-01 7 31611746 31611746 C T CCDC129 Silent p.I139I 0.11 TCGA-FJ-A3Z7-01 7 33545228 33545228 C G BBS9 Missense_Mutation p.L757V 0.10 tolerated(0.38) possibly_damaging(0.712) TCGA-FJ-A3Z7-01 7 42005585 42005585 C T GLI3 Missense_Mutation p.S1029N 0.15 tolerated(1) benign(0.005) TCGA-FJ-A3Z7-01 7 42005604 42005604 G A GLI3 Missense_Mutation p.R1023C 0.14 deleterious(0.01) probably_damaging(0.953) TCGA-FJ-A3Z7-01 7 48266924 48266924 C G ABCA13 Missense_Mutation p.I178M 0.19 possibly_damaging(0.487) TCGA-FJ-A3Z7-01 7 48349571 48349571 C T ABCA13 Silent p.L3117L 0.16 TCGA-FJ-A3Z7-01 7 5353241 5353241 G C TNRC18 Silent p.L2427L 0.48 TCGA-FJ-A3Z7-01 7 6043619 6043621 TTC - PMS2 In_Frame_Del p.E78del 0.09 TCGA-FJ-A3Z7-01 7 70249966 70249966 C G AUTS2 Missense_Mutation p.P729A 0.19 tolerated(0.47) benign(0.082) TCGA-FJ-A3Z7-01 7 73933956 73933956 C G GTF2IRD1 Missense_Mutation p.P307A 0.17 tolerated(0.1) benign(0.022) TCGA-FJ-A3Z7-01 7 7676707 7676707 C G RPA3 Missense_Mutation p.G97A 0.11 tolerated(0.42) benign(0.023) TCGA-FJ-A3Z7-01 7 87072646 87072646 C T ABCB4 Missense_Mutation p.D449N 0.24 tolerated(0.44) benign(0.013) TCGA-FJ-A3Z7-01 7 99783835 99783835 G C STAG3 Missense_Mutation p.E117Q 0.14 deleterious(0) benign(0.348) TCGA-FJ-A3Z7-01 8 113318315 113318315 C A CSMD3 Missense_Mutation p.L2664F 0.23 deleterious(0) probably_damaging(0.997) TCGA-FJ-A3Z7-01 8 2057272 2057272 G A MYOM2 Missense_Mutation p.D1044N 0.46 tolerated(1) benign(0.007) TCGA-FJ-A3Z7-01 8 48805803 48805803 G A PRKDC Silent p.F1247F 0.16 TCGA-FJ-A3Z7-01 8 52339252 52339252 G A PXDNL Missense_Mutation p.S531L 0.13 tolerated(0.11) benign(0.026) TCGA-FJ-A3Z7-01 8 62371083 62371083 C T CLVS1 Missense_Mutation p.S320L 0.31 deleterious_low_confidence(0.01) benign(0.114) TCGA-FJ-A3Z7-01 8 67047319 67047319 C T TRIM55 Silent p.L146L 0.11 TCGA-FJ-A3Z7-01 8 71053436 71053436 G C NCOA2 Missense_Mutation p.S1004C 0.09 deleterious(0.02) benign(0.378) TCGA-FJ-A3Z7-01 8 7308402 7308402 T C SPAG11B Missense_Mutation p.R79G 0.24 deleterious(0) probably_damaging(0.995) TCGA-FJ-A3Z7-01 8 77766597 77766597 G A ZFHX4 Silent p.T2480T 0.83 TCGA-FJ-A3Z7-01 8 8197120 8197120 C G SGK223 Missense_Mutation p.D730H 0.37 probably_damaging(0.997) TCGA-FJ-A3Z7-01 9 100079409 100079409 G A CCDC180 Missense_Mutation p.M330I 0.19 deleterious(0.01) benign(0.211) TCGA-FJ-A3Z7-01 9 103348232 103348232 C T MURC Silent p.I198I 0.64 TCGA-FJ-A3Z7-01 9 104171809 104171809 C T ZNF189 Nonsense_Mutation p.Q587* 0.30 TCGA-FJ-A3Z7-01 9 111812856 111812856 G C TMEM245 Silent p.L657L 0.15 TCGA-FJ-A3Z7-01 9 114904756 114904756 C T SUSD1 Missense_Mutation p.E184K 0.56 deleterious(0.05) probably_damaging(0.931) TCGA-FJ-A3Z7-01 9 120475327 120475327 G C TLR4 Missense_Mutation p.L307F 0.22 deleterious(0.03) benign(0.358) TCGA-FJ-A3Z7-01 9 127617983 127617983 C T WDR38 Silent p.V87V 0.18 TCGA-FJ-A3Z7-01 9 130887585 130887585 C G PTGES2 Missense_Mutation p.E139Q 0.69 tolerated(0.27) possibly_damaging(0.717) TCGA-FJ-A3Z7-01 9 130887694 130887694 C T PTGES2 Silent p.L102L 0.58 TCGA-FJ-A3Z7-01 9 131607787 131607787 G C CCBL1 Intron 0.33 TCGA-FJ-A3Z7-01 9 134889766 134889766 C T MED27 Missense_Mutation p.R146H 0.25 deleterious(0) benign(0.124) TCGA-FJ-A3Z7-01 9 140476993 140476993 C T ZMYND19 3'UTR 0.20 TCGA-FJ-A3Z7-01 9 15188001 15188001 C G TTC39B Missense_Mutation p.D455H 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-FJ-A3Z7-01 9 16437085 16437085 G A BNC2 Silent p.S369S 0.09 TCGA-FJ-A3Z7-01 9 20414109 20414109 C G MLLT3 Missense_Mutation p.E245D 0.25 tolerated(0.17) benign(0.007) TCGA-FJ-A3Z7-01 9 35754000 35754000 G C MSMP Missense_Mutation p.Q43E 0.64 deleterious(0.02) benign(0.321) TCGA-FJ-A3Z7-01 9 84607086 84607086 G A SPATA31D1 Silent p.L567L 0.16 TCGA-FJ-A3Z7-01 9 91090081 91090081 G A SPIN1 Silent p.S226S 0.15 TCGA-FJ-A3Z7-01 X 13780470 13780470 C G OFD1 Missense_Mutation p.R799G 0.27 deleterious(0.02) benign(0.228) TCGA-FJ-A3Z7-01 X 153171751 153171751 C T AVPR2 Missense_Mutation p.A264V 0.49 tolerated(0.09) possibly_damaging(0.833) TCGA-FJ-A3Z7-01 X 3238916 3238916 G C MXRA5 Missense_Mutation p.Q1604E 0.32 deleterious(0.02) benign(0.164) TCGA-FJ-A3Z7-01 X 34961687 34961687 C G FAM47B Missense_Mutation p.L247V 0.29 tolerated(0.11) benign(0.069) TCGA-FJ-A3Z7-01 X 47083838 47083838 C T CDK16 Missense_Mutation p.S160L 0.37 deleterious(0.01) possibly_damaging(0.836) TCGA-FJ-A3Z7-01 X 62885870 62885870 C G ARHGEF9 Missense_Mutation p.E318Q 0.32 tolerated(0.14) benign(0.169) TCGA-FJ-A3Z7-01 X 63411969 63411969 C A AMER1 Nonsense_Mutation p.E400* 0.30 TCGA-FJ-A3Z7-01 X 63412290 63412290 C T AMER1 Missense_Mutation p.V293I 0.29 tolerated(0.47) benign(0.006) TCGA-FJ-A3Z7-01 X 63412575 63412575 C G AMER1 Missense_Mutation p.E198Q 0.31 tolerated(0.06) benign(0.044) TCGA-FJ-A3Z7-01 X 75649248 75649248 C T MAGEE1 Nonsense_Mutation p.Q309* 0.12 TCGA-FJ-A3Z7-01 X 96854279 96854279 C G DIAPH2 Nonsense_Mutation p.S1090* 0.70 TCGA-FJ-A3Z9-01 10 108589424 108589424 C T SORCS1 Missense_Mutation p.D212N 0.36 tolerated(0.09) possibly_damaging(0.671) TCGA-FJ-A3Z9-01 10 115963186 115963186 G A TDRD1 Missense_Mutation p.V281M 0.41 tolerated(0.07) possibly_damaging(0.447) TCGA-FJ-A3Z9-01 10 134943032 134943032 C T GPR123 3'UTR 0.10 TCGA-FJ-A3Z9-01 10 44873331 44873331 C T CXCL12 Missense_Mutation p.G97R 0.50 tolerated_low_confidence(0.26) benign(0.001) TCGA-FJ-A3Z9-01 10 46967494 46967494 G A SYT15 Missense_Mutation p.R195C 0.17 tolerated(0.06) benign(0.052) TCGA-FJ-A3Z9-01 10 56287571 56287571 C T PCDH15 Splice_Site p.X53_splice 0.37 TCGA-FJ-A3Z9-01 11 102641523 102641523 C T MMP10 3'UTR 0.46 TCGA-FJ-A3Z9-01 11 47612191 47612191 C T C1QTNF4 Missense_Mutation p.G58R 0.47 deleterious(0) benign(0) TCGA-FJ-A3Z9-01 11 62402362 62402362 C T GANAB Missense_Mutation p.R164Q 0.41 tolerated(0.55) benign(0.024) TCGA-FJ-A3Z9-01 11 76062030 76062030 A G PRKRIR Silent p.L722L 0.40 TCGA-FJ-A3Z9-01 11 87908476 87908476 A G RAB38 Missense_Mutation p.I26T 0.29 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z9-01 12 132425876 132425876 G C PUS1 Missense_Mutation p.R195T 0.34 tolerated(0.16) benign(0.044) TCGA-FJ-A3Z9-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.60 deleterious(0) possibly_damaging(0.479) TCGA-FJ-A3Z9-01 13 111371994 111371997 GAAG AAA ING1 Frame_Shift_Del p.K330Rfs*37 0.34 TCGA-FJ-A3Z9-01 13 73636360 73636361 - C KLF5 Frame_Shift_Ins p.K209Qfs*45 0.33 TCGA-FJ-A3Z9-01 14 21884056 21884056 G C CHD8 Nonsense_Mutation p.S576* 0.40 TCGA-FJ-A3Z9-01 15 51217364 51217364 G A AP4E1 Missense_Mutation p.E164K 0.32 deleterious(0) probably_damaging(0.99) TCGA-FJ-A3Z9-01 16 2225896 2225896 A G TRAF7 Missense_Mutation p.Y563C 0.44 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z9-01 16 31131792 31131792 G A KAT8 Missense_Mutation p.R140H 0.38 deleterious(0) probably_damaging(0.994) TCGA-FJ-A3Z9-01 16 3781324 3781326 AGG - CREBBP In_Frame_Del p.S1680del 0.32 TCGA-FJ-A3Z9-01 16 67694937 67694937 C T PARD6A 5'UTR 0.42 TCGA-FJ-A3Z9-01 16 68961747 68961747 G A TANGO6 Missense_Mutation p.E802K 0.42 tolerated(0.41) benign(0.021) TCGA-FJ-A3Z9-01 16 711933 711933 C A WDR90 Missense_Mutation p.L1303M 0.48 deleterious(0.04) probably_damaging(0.994) TCGA-FJ-A3Z9-01 17 10216005 10216005 C T MYH13 Silent p.S1417S 0.28 TCGA-FJ-A3Z9-01 17 30349267 30349267 G A LRRC37B Missense_Mutation p.E368K 0.41 tolerated(0.15) probably_damaging(0.952) TCGA-FJ-A3Z9-01 17 36352487 36352487 C G RP11-1407O15.2 Missense_Mutation p.D434H 0.05 TCGA-FJ-A3Z9-01 17 40850897 40850897 C T CNTNAP1 Missense_Mutation p.P1375L 0.35 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FJ-A3Z9-01 17 45669361 45669361 G C NPEPPS Missense_Mutation p.D434H 0.06 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3Z9-01 17 79478387 79478387 C A ACTG1 Missense_Mutation p.R210L 0.12 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FJ-A3Z9-01 17 9830077 9830077 C T GAS7 Missense_Mutation p.E299K 0.37 deleterious(0.04) benign(0.391) TCGA-FJ-A3Z9-01 18 13740210 13740210 G A RNMT Missense_Mutation p.D242N 0.16 deleterious(0.02) possibly_damaging(0.876) TCGA-FJ-A3Z9-01 18 43262298 43262298 C A SLC14A2 Silent p.P859P 0.11 TCGA-FJ-A3Z9-01 19 1430360 1430360 C - DAZAP1 Frame_Shift_Del p.F290Lfs*45 0.33 TCGA-FJ-A3Z9-01 19 17918578 17918578 G T B3GNT3 5'UTR 0.48 TCGA-FJ-A3Z9-01 19 37865123 37865123 C G ZNF527 Missense_Mutation p.A8G 0.44 deleterious(0.03) benign(0.024) TCGA-FJ-A3Z9-01 19 4216828 4216828 C T ANKRD24 Silent p.N557N 0.38 TCGA-FJ-A3Z9-01 19 42863394 42863394 C T MEGF8 Missense_Mutation p.R1763C 0.28 tolerated(0.07) possibly_damaging(0.54) TCGA-FJ-A3Z9-01 19 51918558 51918558 G T SIGLEC10 Missense_Mutation p.Q403K 0.15 tolerated(0.15) benign(0.049) TCGA-FJ-A3Z9-01 1 151774969 151774969 C G LINGO4 Missense_Mutation p.R71P 0.12 deleterious(0) benign(0.434) TCGA-FJ-A3Z9-01 1 155231934 155231934 C G SCAMP3 Missense_Mutation p.Q3H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-FJ-A3Z9-01 1 168215815 168215815 G T SFT2D2 3'UTR 0.43 TCGA-FJ-A3Z9-01 1 185987376 185987376 C T HMCN1 Missense_Mutation p.R1788C 0.35 possibly_damaging(0.883) TCGA-FJ-A3Z9-01 1 190234069 190234069 C T BRINP3 Missense_Mutation p.A182T 0.40 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3Z9-01 1 201798311 201798311 G A IPO9 5'UTR 0.37 TCGA-FJ-A3Z9-01 1 206903367 206903367 C T MAPKAPK2 Silent p.L205L 0.39 TCGA-FJ-A3Z9-01 1 207198319 207198319 C T C1orf116 Missense_Mutation p.D66N 0.46 deleterious(0) probably_damaging(0.968) TCGA-FJ-A3Z9-01 1 207198379 207198379 C T C1orf116 Missense_Mutation p.E46K 0.43 deleterious(0) possibly_damaging(0.886) TCGA-FJ-A3Z9-01 1 235299018 235299018 C T RBM34 Silent p.V319V 0.37 TCGA-FJ-A3Z9-01 1 27101468 27101468 C T ARID1A Nonsense_Mutation p.Q1584* 0.53 TCGA-FJ-A3Z9-01 1 27107098 27107098 G C ARID1A Missense_Mutation p.A2237P 0.25 probably_damaging(0.974) TCGA-FJ-A3Z9-01 1 6008252 6008252 G A NPHP4 Silent p.G290G 0.23 TCGA-FJ-A3Z9-01 20 30365382 30365382 C A TPX2 Missense_Mutation p.Q275K 0.38 deleterious(0.03) benign(0.004) TCGA-FJ-A3Z9-01 20 44108734 44108734 G T WFDC2 Intron 0.15 TCGA-FJ-A3Z9-01 21 43230526 43230526 C T PRDM15 Missense_Mutation p.R1245Q 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-FJ-A3Z9-01 22 26830196 26830196 C T ASPHD2 Silent p.L205L 0.35 TCGA-FJ-A3Z9-01 2 110927479 110927479 C A NPHP1 Missense_Mutation p.E142D 0.47 tolerated(0.17) benign(0.007) TCGA-FJ-A3Z9-01 2 113591060 113591060 G A IL1B Silent p.A64A 0.11 TCGA-FJ-A3Z9-01 2 179605360 179605360 C T TTN Silent p.E4200E 0.38 TCGA-FJ-A3Z9-01 2 210561031 210561031 C T MAP2 Silent p.D1379D 0.41 TCGA-FJ-A3Z9-01 2 86832096 86832096 G A RNF103 Nonsense_Mutation p.Q310* 0.32 TCGA-FJ-A3Z9-01 3 11058819 11058819 C T SLC6A1 5'UTR 0.29 TCGA-FJ-A3Z9-01 3 46539568 46539568 G T RTP3 Nonsense_Mutation p.E6* 0.41 TCGA-FJ-A3Z9-01 4 20620540 20620540 C T SLIT2 Missense_Mutation p.R1500W 0.42 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3Z9-01 4 2695533 2695533 G C FAM193A Missense_Mutation p.K717N 0.38 tolerated(0.23) probably_damaging(0.99) TCGA-FJ-A3Z9-01 4 8869691 8869691 T G HMX1 Missense_Mutation p.K259Q 0.56 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3Z9-01 5 140616078 140616078 C T PCDHB18 RNA 0.41 TCGA-FJ-A3Z9-01 5 140750855 140750855 G A PCDHGB3 Silent p.T298T 0.35 TCGA-FJ-A3Z9-01 5 158140136 158140136 G T EBF1 Missense_Mutation p.A404E 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FJ-A3Z9-01 5 176072437 176072437 C T EIF4E1B Silent p.V178V 0.35 TCGA-FJ-A3Z9-01 6 146351314 146351314 C T GRM1 Missense_Mutation p.R221C 0.37 deleterious(0) probably_damaging(0.932) TCGA-FJ-A3Z9-01 6 146720312 146720312 C T GRM1 Silent p.L713L 0.43 TCGA-FJ-A3Z9-01 6 30622489 30622489 C T DHX16 Missense_Mutation p.M997I 0.42 deleterious(0.01) unknown(0) TCGA-FJ-A3Z9-01 6 36172491 36172491 G A BRPF3 Missense_Mutation p.R502Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3Z9-01 7 100463638 100463638 C G SLC12A9 Missense_Mutation p.S719C 0.39 deleterious(0.03) benign(0.246) TCGA-FJ-A3Z9-01 7 111381156 111381156 G T DOCK4 Missense_Mutation p.N1669K 0.41 tolerated(0.36) benign(0.066) TCGA-FJ-A3Z9-01 7 131859614 131859614 A G PLXNA4 Missense_Mutation p.F1314L 0.37 deleterious(0) possibly_damaging(0.519) TCGA-FJ-A3Z9-01 7 138768751 138768751 G A ZC3HAV1 Missense_Mutation p.R158W 0.46 deleterious(0) probably_damaging(0.973) TCGA-FJ-A3Z9-01 7 143400204 143400204 C T FAM115C Silent p.P39P 0.21 TCGA-FJ-A3Z9-01 7 150555050 150555050 G A AOC1 Missense_Mutation p.G498S 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-FJ-A3Z9-01 7 156967650 156967653 TGTT - UBE3C Frame_Shift_Del p.F128Sfs*16 0.35 TCGA-FJ-A3Z9-01 7 31124941 31124941 C T ADCYAP1R1 Missense_Mutation p.R185C 0.11 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z9-01 7 47851456 47851456 G A PKD1L1 Missense_Mutation p.R2514C 0.10 tolerated(0.13) benign(0.104) TCGA-FJ-A3Z9-01 7 5781363 5781363 C T RNF216 Silent p.R95R 0.36 TCGA-FJ-A3Z9-01 8 109001361 109001361 C T RSPO2 Missense_Mutation p.R69H 0.08 deleterious(0) probably_damaging(0.965) TCGA-FJ-A3Z9-01 8 116631650 116631650 C T TRPS1 Silent p.P225P 0.28 TCGA-FJ-A3Z9-01 8 13259009 13259009 G A DLC1 Silent p.G381G 0.65 TCGA-FJ-A3Z9-01 8 136554967 136554968 - A KHDRBS3 Frame_Shift_Ins p.M95Nfs*31 0.23 TCGA-FJ-A3Z9-01 8 140630401 140630402 - AAT KCNK9 3'UTR 0.15 TCGA-FJ-A3Z9-01 8 75227777 75227777 G A JPH1 Missense_Mutation p.T153M 0.11 tolerated(0.06) probably_damaging(0.932) TCGA-FJ-A3Z9-01 9 114695267 114695267 T C UGCG Missense_Mutation p.L392P 0.11 tolerated_low_confidence(0.08) possibly_damaging(0.809) TCGA-FJ-A3Z9-01 9 139836093 139836093 G A FBXW5 Silent p.P380P 0.09 TCGA-FJ-A3Z9-01 9 37740845 37740845 G A FRMPD1 Missense_Mutation p.A774T 0.22 deleterious(0) probably_damaging(0.979) TCGA-FJ-A3Z9-01 9 80031037 80031037 G C VPS13A 3'UTR 0.10 TCGA-FJ-A3Z9-01 X 153284896 153284896 T C IRAK1 Missense_Mutation p.D97G 0.86 deleterious(0) probably_damaging(1) TCGA-FJ-A3Z9-01 X 153593530 153593530 C T FLNA Silent p.T555T 0.85 TCGA-FJ-A3Z9-01 X 77268474 77268474 A G ATP7A Silent p.A757A 0.80 TCGA-FJ-A3Z9-01 X 82763950 82763950 C G POU3F4 Missense_Mutation p.I206M 0.79 deleterious(0) probably_damaging(0.928) TCGA-FJ-A3ZE-01 10 100185614 100185614 C T HPS1 Silent p.L372L 0.20 TCGA-FJ-A3ZE-01 10 105495534 105495534 C A SH3PXD2A Missense_Mutation p.D88Y 0.61 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 10 115596934 115596934 C G DCLRE1A Missense_Mutation p.G950A 0.51 tolerated(0.14) benign(0.055) TCGA-FJ-A3ZE-01 10 116975551 116975551 A T ATRNL1 Missense_Mutation p.Y482F 0.19 tolerated(0.13) benign(0.046) TCGA-FJ-A3ZE-01 10 118228771 118228771 T C PNLIPRP3 Silent p.N334N 0.62 TCGA-FJ-A3ZE-01 10 120095128 120095128 T C FAM204A Missense_Mutation p.H87R 0.11 tolerated(0.29) benign(0.009) TCGA-FJ-A3ZE-01 10 121296045 121296045 C A RGS10 Intron 0.44 TCGA-FJ-A3ZE-01 10 125506270 125506270 C G CPXM2 3'UTR 0.59 TCGA-FJ-A3ZE-01 10 126519948 126519948 C T FAM175B Nonsense_Mutation p.R232* 0.12 TCGA-FJ-A3ZE-01 10 126683152 126683152 G A CTBP2 Silent p.G762G 0.12 TCGA-FJ-A3ZE-01 10 129906934 129906934 T G MKI67 Missense_Mutation p.E1057A 0.59 tolerated(0.24) benign(0.426) TCGA-FJ-A3ZE-01 10 135053570 135053570 C T VENTX Silent p.G179G 0.30 TCGA-FJ-A3ZE-01 10 15120593 15120593 G A ACBD7 Missense_Mutation p.T68M 0.22 deleterious(0.02) benign(0.067) TCGA-FJ-A3ZE-01 10 16883004 16883004 A G CUBN Missense_Mutation p.F3236L 0.46 tolerated(0.07) benign(0.327) TCGA-FJ-A3ZE-01 10 17277194 17277194 T C VIM Silent p.R345R 0.27 TCGA-FJ-A3ZE-01 10 24669846 24669846 G C KIAA1217 Missense_Mutation p.D135H 0.19 deleterious(0) probably_damaging(0.979) TCGA-FJ-A3ZE-01 10 24910248 24910248 A C ARHGAP21 Missense_Mutation p.N192K 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-FJ-A3ZE-01 10 27539241 27539241 G A RP11-85G18.6 RNA 0.54 TCGA-FJ-A3ZE-01 10 29760165 29760165 A T SVIL Missense_Mutation p.V1846D 0.55 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 10 44111919 44111919 C T ZNF485 Missense_Mutation p.S143L 0.23 deleterious(0.02) benign(0.105) TCGA-FJ-A3ZE-01 10 64913495 64913495 G T NRBF2 Silent p.L127L 0.29 TCGA-FJ-A3ZE-01 10 72195635 72195635 G C NODAL Missense_Mutation p.P100A 0.27 tolerated(0.2) benign(0.007) TCGA-FJ-A3ZE-01 10 72293777 72293777 G T PALD1 Missense_Mutation p.V324F 0.56 deleterious(0) probably_damaging(0.952) TCGA-FJ-A3ZE-01 10 75255495 75255495 T C PPP3CB Intron 0.30 TCGA-FJ-A3ZE-01 10 75523669 75523669 T A SEC24C Silent p.S385S 0.65 TCGA-FJ-A3ZE-01 10 76867962 76867962 G A DUSP13 Intron 0.38 TCGA-FJ-A3ZE-01 10 79571722 79571722 T A DLG5 Missense_Mutation p.N1428Y 0.64 deleterious(0) benign(0.244) TCGA-FJ-A3ZE-01 10 89472929 89472929 C G PAPSS2 Silent p.V81V 0.60 TCGA-FJ-A3ZE-01 10 97096652 97096652 G T SORBS1 Missense_Mutation p.Q1089K 0.68 tolerated_low_confidence(0.14) benign(0.002) TCGA-FJ-A3ZE-01 10 98807755 98807755 T C SLIT1 Splice_Site p.X489_splice 0.26 TCGA-FJ-A3ZE-01 11 1018244 1018244 G C MUC6 Missense_Mutation p.N1519K 0.74 unknown(0) TCGA-FJ-A3ZE-01 11 102477386 102477386 C T MMP20 Missense_Mutation p.G278E 0.29 tolerated(0.91) benign(0.002) TCGA-FJ-A3ZE-01 11 102647046 102647046 G T MMP10 Missense_Mutation p.S299R 0.37 deleterious(0) possibly_damaging(0.908) TCGA-FJ-A3ZE-01 11 105880543 105880543 C G MSANTD4 Missense_Mutation p.E253Q 0.48 tolerated(0.07) benign(0.389) TCGA-FJ-A3ZE-01 11 108206598 108206598 T A ATM Silent p.A2726A 0.49 TCGA-FJ-A3ZE-01 11 116692251 116692251 G C APOA4 Missense_Mutation p.L175V 0.48 deleterious(0.05) probably_damaging(0.919) TCGA-FJ-A3ZE-01 11 117301499 117301499 C A DSCAML1 Missense_Mutation p.K1935N 0.41 deleterious(0) probably_damaging(0.98) TCGA-FJ-A3ZE-01 11 124738754 124738754 C A ROBO3 Missense_Mutation p.L73M 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-FJ-A3ZE-01 11 125221258 125221258 C A PKNOX2 Silent p.V19V 0.42 TCGA-FJ-A3ZE-01 11 125765537 125765537 C A PUS3 Missense_Mutation p.A176S 0.54 tolerated(0.11) possibly_damaging(0.863) TCGA-FJ-A3ZE-01 11 16776487 16776487 C A C11orf58 Missense_Mutation p.P130T 0.91 tolerated(0.49) benign(0.039) TCGA-FJ-A3ZE-01 11 27076960 27076960 C T BBOX1 5'UTR 0.89 TCGA-FJ-A3ZE-01 11 55927213 55927213 T G OR8K5 Missense_Mutation p.E194A 0.10 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-FJ-A3ZE-01 11 56043760 56043760 G T OR5T1 Missense_Mutation p.G216C 0.40 deleterious(0) possibly_damaging(0.808) TCGA-FJ-A3ZE-01 11 5775984 5775984 A C OR52N4 Missense_Mutation p.N5T 0.97 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZE-01 11 58893494 58893494 G C FAM111B Missense_Mutation p.D642H 0.47 deleterious(0) possibly_damaging(0.896) TCGA-FJ-A3ZE-01 11 6048854 6048854 G T OR56A1 Missense_Mutation p.F27L 0.93 tolerated(0.52) benign(0.014) TCGA-FJ-A3ZE-01 11 62363785 62363785 C G MTA2 Missense_Mutation p.D328H 0.47 deleterious(0) probably_damaging(0.981) TCGA-FJ-A3ZE-01 11 65417137 65417137 G C SIPA1 Silent p.L877L 0.49 TCGA-FJ-A3ZE-01 11 722404 722404 G - EPS8L2 Frame_Shift_Del p.V355Sfs*94 0.52 TCGA-FJ-A3ZE-01 11 73625498 73625498 G C PAAF1 Missense_Mutation p.L256F 0.39 deleterious(0.03) benign(0.413) TCGA-FJ-A3ZE-01 11 76255837 76255837 G A C11orf30 Missense_Mutation p.A1082T 0.47 tolerated_low_confidence(0.11) probably_damaging(0.956) TCGA-FJ-A3ZE-01 11 77635669 77635669 G T INTS4 Intron 0.50 TCGA-FJ-A3ZE-01 11 7949365 7949365 G T OR10A6 Missense_Mutation p.T282K 0.85 deleterious(0) possibly_damaging(0.836) TCGA-FJ-A3ZE-01 11 800619 800619 C A PIDD Missense_Mutation p.E655D 0.94 deleterious(0.03) probably_damaging(0.997) TCGA-FJ-A3ZE-01 11 92715238 92715238 C G MTNR1B Silent p.P283P 0.39 TCGA-FJ-A3ZE-01 11 9522678 9522678 G T ZNF143 Silent p.R336R 0.88 TCGA-FJ-A3ZE-01 11 95712374 95712374 T C MAML2 Missense_Mutation p.N1070S 0.50 unknown(0) TCGA-FJ-A3ZE-01 12 103288653 103288653 C T PAH Missense_Mutation p.R71H 0.19 deleterious(0.03) benign(0.012) TCGA-FJ-A3ZE-01 12 104327817 104327817 C T HSP90B1 Silent p.T165T 0.39 TCGA-FJ-A3ZE-01 12 105459055 105459055 A T ALDH1L2 Missense_Mutation p.I259K 0.36 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-FJ-A3ZE-01 12 10962143 10962143 A T TAS2R9 Missense_Mutation p.F178I 0.32 tolerated(0.3) benign(0.255) TCGA-FJ-A3ZE-01 12 123481053 123481053 C A PITPNM2 Silent p.V578V 0.31 TCGA-FJ-A3ZE-01 12 124081280 124081280 G A TMED2 3'UTR 0.57 TCGA-FJ-A3ZE-01 12 1940231 1940231 G A LRTM2 Silent p.V66V 0.54 TCGA-FJ-A3ZE-01 12 21007999 21007999 A T LST3 Missense_Mutation p.K41I 0.42 deleterious(0) probably_damaging(0.992) TCGA-FJ-A3ZE-01 12 30863342 30863342 C A CAPRIN2 Missense_Mutation p.G910C 0.50 tolerated(0.08) possibly_damaging(0.889) TCGA-FJ-A3ZE-01 12 39071345 39071345 G A CPNE8 Missense_Mutation p.S428F 0.30 deleterious(0.03) possibly_damaging(0.548) TCGA-FJ-A3ZE-01 12 50152022 50152022 G A TMBIM6 Missense_Mutation p.G158D 0.40 deleterious(0) probably_damaging(0.984) TCGA-FJ-A3ZE-01 12 52709714 52709714 C A KRT83 Missense_Mutation p.A409S 0.46 deleterious(0.03) possibly_damaging(0.727) TCGA-FJ-A3ZE-01 12 53039197 53039197 G A KRT2 Missense_Mutation p.S509L 0.49 deleterious(0.01) unknown(0) TCGA-FJ-A3ZE-01 12 53343409 53343409 G T KRT18 Intron 0.45 TCGA-FJ-A3ZE-01 12 54799117 54799117 C T ITGA5 Missense_Mutation p.R353Q 0.68 deleterious(0.01) possibly_damaging(0.859) TCGA-FJ-A3ZE-01 12 54911366 54911366 G T NCKAP1L Missense_Mutation p.W382L 0.51 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 12 55357674 55357674 G T TESPA1 Silent p.G169G 0.51 TCGA-FJ-A3ZE-01 12 56349451 56349451 A C PMEL Missense_Mutation p.L520R 0.41 deleterious(0) probably_damaging(0.985) TCGA-FJ-A3ZE-01 12 56733306 56733306 C T IL23A Nonsense_Mutation p.Q87* 0.46 TCGA-FJ-A3ZE-01 12 57588301 57588301 G A LRP1 Intron 0.44 TCGA-FJ-A3ZE-01 12 57989742 57989742 G C PIP4K2C Silent p.R147R 0.38 TCGA-FJ-A3ZE-01 12 70070774 70070774 G A BEST3 Silent p.G263G 0.53 TCGA-FJ-A3ZE-01 12 71519018 71519018 C G TSPAN8 3'UTR 0.29 TCGA-FJ-A3ZE-01 12 81688795 81688795 G A PPFIA2 Missense_Mutation p.A915V 0.22 deleterious(0.01) possibly_damaging(0.67) TCGA-FJ-A3ZE-01 12 88530508 88530508 C T CEP290 Missense_Mutation p.C118Y 0.33 benign(0.029) TCGA-FJ-A3ZE-01 12 95485582 95485582 C T FGD6 Missense_Mutation p.V1251I 0.25 tolerated(0.07) possibly_damaging(0.67) TCGA-FJ-A3ZE-01 13 102029296 102029296 G T NALCN Missense_Mutation p.P163T 0.42 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 13 113803477 113803477 C A F10 Silent p.G371G 0.46 TCGA-FJ-A3ZE-01 13 21374421 21374421 C T XPO4 Missense_Mutation p.G674D 0.47 deleterious(0) probably_damaging(0.986) TCGA-FJ-A3ZE-01 13 33591101 33591101 C G KL Missense_Mutation p.R175G 0.41 tolerated(0.27) possibly_damaging(0.506) TCGA-FJ-A3ZE-01 13 39917887 39917887 T G LHFP 3'UTR 0.56 TCGA-FJ-A3ZE-01 13 47243194 47243194 G C LRCH1 Missense_Mutation p.C161S 0.43 tolerated(0.29) benign(0.02) TCGA-FJ-A3ZE-01 13 52663442 52663442 C T NEK5 Missense_Mutation p.E406K 0.32 deleterious(0) possibly_damaging(0.856) TCGA-FJ-A3ZE-01 13 60686272 60686272 G A DIAPH3 Missense_Mutation p.P88S 0.42 tolerated(0.07) benign(0.184) TCGA-FJ-A3ZE-01 13 96277135 96277135 C G DZIP1 Missense_Mutation p.D287H 0.20 tolerated(0.79) benign(0.397) TCGA-FJ-A3ZE-01 13 99532221 99532221 G T DOCK9 Nonsense_Mutation p.Y958* 0.44 TCGA-FJ-A3ZE-01 14 102498707 102498707 C A DYNC1H1 Missense_Mutation p.L3328M 0.62 probably_damaging(0.984) TCGA-FJ-A3ZE-01 14 102792535 102792535 G C ZNF839 Missense_Mutation p.D168H 0.69 tolerated(0.3) benign(0.005) TCGA-FJ-A3ZE-01 14 103566640 103566640 C - EXOC3L4 Frame_Shift_Del p.S29Pfs*25 0.30 TCGA-FJ-A3ZE-01 14 104642734 104642734 C G KIF26A Silent p.A1203A 0.45 TCGA-FJ-A3ZE-01 14 105174812 105174812 C A INF2 Missense_Mutation p.A592D 0.47 tolerated(0.4) unknown(0) TCGA-FJ-A3ZE-01 14 105354104 105354104 G C CEP170B Silent p.R1176R 0.59 TCGA-FJ-A3ZE-01 14 106235715 106235715 G T IGHG3 Missense_Mutation p.D331E 0.17 tolerated(0.05) possibly_damaging(0.877) TCGA-FJ-A3ZE-01 14 106926316 106926316 T A IGHV3-43 Missense_Mutation p.S76C 0.67 deleterious_low_confidence(0) possibly_damaging(0.679) TCGA-FJ-A3ZE-01 14 20586121 20586121 C G OR4K17 Missense_Mutation p.H186D 0.38 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 14 20876347 20876347 T A TEP1 Silent p.T84T 0.51 TCGA-FJ-A3ZE-01 14 21024720 21024720 C T RNASE9 Nonsense_Mutation p.W175* 0.45 TCGA-FJ-A3ZE-01 14 22934568 22934568 C T TRDC 3'UTR 0.43 TCGA-FJ-A3ZE-01 14 22982966 22982966 T A TRAJ29 Missense_Mutation p.L16H 0.38 unknown(0) TCGA-FJ-A3ZE-01 14 24723917 24723917 C A TGM1 Missense_Mutation p.A681S 0.44 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZE-01 14 26917112 26917112 T C NOVA1 3'UTR 0.13 TCGA-FJ-A3ZE-01 14 31119826 31119826 C T SCFD1 Missense_Mutation p.T242I 0.37 deleterious(0.03) possibly_damaging(0.625) TCGA-FJ-A3ZE-01 14 37777260 37777260 G C MIPOL1 Splice_Site p.X208_splice 0.38 TCGA-FJ-A3ZE-01 14 38723983 38723983 C G CLEC14A Missense_Mutation p.M415I 0.52 tolerated(0.1) benign(0.015) TCGA-FJ-A3ZE-01 14 57689135 57689135 C A EXOC5 Splice_Site p.X433_splice 0.40 TCGA-FJ-A3ZE-01 14 69256483 69256483 A G ZFP36L1 Missense_Mutation p.F262L 0.24 tolerated(0.41) probably_damaging(0.989) TCGA-FJ-A3ZE-01 14 73137957 73137957 C G DPF3 Missense_Mutation p.D321H 0.47 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FJ-A3ZE-01 14 74824202 74824202 C A VRTN Missense_Mutation p.P239H 0.41 deleterious(0) probably_damaging(0.963) TCGA-FJ-A3ZE-01 14 76107313 76107313 C A FLVCR2 Silent p.G417G 0.36 TCGA-FJ-A3ZE-01 14 89148328 89148328 C T EML5 Silent p.L1010L 0.45 TCGA-FJ-A3ZE-01 14 90871063 90871063 G T CALM1 3'UTR 0.39 TCGA-FJ-A3ZE-01 14 92555107 92555107 G C ATXN3 Missense_Mutation p.L148V 0.47 deleterious(0) benign(0.356) TCGA-FJ-A3ZE-01 15 100340361 100340361 G A DNM1P46 RNA 0.50 TCGA-FJ-A3ZE-01 15 20658926 20658926 C A HERC2P3 RNA 0.23 TCGA-FJ-A3ZE-01 15 20662904 20662904 G C HERC2P3 RNA 0.19 TCGA-FJ-A3ZE-01 15 25449350 25449350 C A SNORD115-20 5'Flank 0.45 TCGA-FJ-A3ZE-01 15 28769180 28769180 C G GOLGA8G Missense_Mutation p.G439A 1.00 deleterious(0.05) benign(0.435) TCGA-FJ-A3ZE-01 15 31776332 31776332 A G OTUD7A Missense_Mutation p.F649S 0.36 deleterious(0) probably_damaging(0.985) TCGA-FJ-A3ZE-01 15 44829435 44829435 G C EIF3J Missense_Mutation p.D15H 0.44 deleterious(0) unknown(0) TCGA-FJ-A3ZE-01 15 48561931 48561931 C A SLC12A1 Missense_Mutation p.T791K 0.41 tolerated(0.56) benign(0.001) TCGA-FJ-A3ZE-01 15 50211048 50211048 C A ATP8B4 Nonsense_Mutation p.G675* 0.42 TCGA-FJ-A3ZE-01 15 54803976 54803976 A G UNC13C Missense_Mutation p.Q1802R 0.69 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-FJ-A3ZE-01 15 56152722 56152722 G T NEDD4 Silent p.A628A 0.15 TCGA-FJ-A3ZE-01 15 62146695 62146695 C A VPS13C Missense_Mutation p.Q3741H 0.44 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-FJ-A3ZE-01 15 74630286 74630286 C T CYP11A1 3'UTR 0.44 TCGA-FJ-A3ZE-01 15 75981330 75981330 G A CSPG4 Silent p.A692A 0.40 TCGA-FJ-A3ZE-01 15 79189443 79189443 G T MORF4L1 3'UTR 0.57 TCGA-FJ-A3ZE-01 15 90897897 90897897 G C ZNF774 Missense_Mutation p.W2S 0.45 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FJ-A3ZE-01 15 91500713 91500713 G A RCCD1 Silent p.V179V 0.33 TCGA-FJ-A3ZE-01 15 96877679 96877679 G T NR2F2 Missense_Mutation p.A273S 0.40 tolerated(0.19) benign(0.395) TCGA-FJ-A3ZE-01 16 1034810 1034810 G T SOX8 Silent p.G255G 0.54 TCGA-FJ-A3ZE-01 16 15023241 15023241 C A RP11-958N24.1 RNA 0.18 TCGA-FJ-A3ZE-01 16 15133844 15133844 T A NTAN1 Silent p.R207R 0.47 TCGA-FJ-A3ZE-01 16 16130386 16130386 C T ABCC1 Silent p.N245N 0.47 TCGA-FJ-A3ZE-01 16 20084882 20084882 G T GPR139 Silent p.P19P 0.58 TCGA-FJ-A3ZE-01 16 2168842 2168842 G A PKD1 Silent p.L122L 0.17 TCGA-FJ-A3ZE-01 16 23388689 23388689 G A SCNN1B Nonsense_Mutation p.W462* 0.39 TCGA-FJ-A3ZE-01 16 27475764 27475764 C T GTF3C1 Missense_Mutation p.E1917K 0.50 tolerated(0.34) benign(0.003) TCGA-FJ-A3ZE-01 16 27556790 27556790 C G GTF3C1 Silent p.V92V 0.48 TCGA-FJ-A3ZE-01 16 28493802 28493802 C A CLN3 Missense_Mutation p.G301V 0.13 deleterious(0) probably_damaging(0.928) TCGA-FJ-A3ZE-01 16 28925724 28925724 C A RABEP2 Missense_Mutation p.V243F 0.53 tolerated(0.77) benign(0.013) TCGA-FJ-A3ZE-01 16 30392504 30392504 C A SEPT1 Missense_Mutation p.V173F 0.38 possibly_damaging(0.818) TCGA-FJ-A3ZE-01 16 31073488 31073488 C T ZNF668 Missense_Mutation p.C277Y 0.49 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 16 31088322 31088322 A G ZNF646 Missense_Mutation p.E226G 0.47 deleterious(0.03) benign(0.426) TCGA-FJ-A3ZE-01 16 3140433 3140433 C A ZSCAN10 Silent p.V279V 0.41 TCGA-FJ-A3ZE-01 16 3613643 3613643 C A NLRC3 Missense_Mutation p.G479V 0.49 tolerated(0.1) benign(0.027) TCGA-FJ-A3ZE-01 16 46764580 46764580 T C MYLK3 Missense_Mutation p.E498G 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-FJ-A3ZE-01 16 48248887 48248887 G C ABCC11 Missense_Mutation p.L385V 0.50 tolerated(0.7) benign(0.326) TCGA-FJ-A3ZE-01 16 49407936 49407936 C A C16orf78 Missense_Mutation p.S29Y 0.53 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3ZE-01 16 5094197 5094197 A G C16orf89 3'UTR 0.70 TCGA-FJ-A3ZE-01 16 55523725 55523725 G A MMP2 Missense_Mutation p.C390Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 16 58314503 58314503 G A PRSS54 Silent p.A271A 0.53 TCGA-FJ-A3ZE-01 16 66436895 66436895 C A CDH5 Missense_Mutation p.D726E 0.48 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 16 70605036 70605036 G T SF3B3 Silent p.R1149R 0.48 TCGA-FJ-A3ZE-01 16 71668682 71668682 G T MARVELD3 Intron 0.44 TCGA-FJ-A3ZE-01 16 74452026 74452026 T A CLEC18B Silent p.A129A 0.42 TCGA-FJ-A3ZE-01 16 81232364 81232364 C - PKD1L2 Frame_Shift_Del p.T11Pfs*16 0.41 TCGA-FJ-A3ZE-01 16 9014215 9014215 C T USP7 Splice_Site p.X204_splice 0.41 TCGA-FJ-A3ZE-01 17 10353854 10353854 G C MYH4 Missense_Mutation p.S1366C 0.92 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 17 17719174 17719174 C G SREBF1 Missense_Mutation p.V825L 0.29 deleterious(0.01) probably_damaging(0.97) TCGA-FJ-A3ZE-01 17 18181198 18181198 C A TOP3A Missense_Mutation p.C873F 0.51 tolerated(0.71) benign(0) TCGA-FJ-A3ZE-01 17 19319264 19319264 C T RNF112 Missense_Mutation p.L558F 0.39 tolerated(0.2) unknown(0) TCGA-FJ-A3ZE-01 17 34251642 34251642 G A RDM1 Silent p.G178G 0.92 TCGA-FJ-A3ZE-01 17 40704977 40704977 C G HSD17B1 Missense_Mutation p.T9S 0.92 tolerated(0.07) probably_damaging(1) TCGA-FJ-A3ZE-01 17 43220992 43220992 G A ACBD4 Missense_Mutation p.S337N 0.99 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-FJ-A3ZE-01 17 46152410 46152410 C G CBX1 Missense_Mutation p.G124A 0.51 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 17 48195665 48195665 C T SAMD14 Missense_Mutation p.A24T 0.54 tolerated(0.08) benign(0.009) TCGA-FJ-A3ZE-01 17 48269225 48269225 T C COL1A1 Missense_Mutation p.E684G 0.48 probably_damaging(0.999) TCGA-FJ-A3ZE-01 17 55123481 55123481 C G RNF126P1 RNA 0.75 TCGA-FJ-A3ZE-01 17 56232574 56232574 C G OR4D1 Silent p.T20T 0.53 TCGA-FJ-A3ZE-01 17 61278265 61278265 G A TANC2 Missense_Mutation p.G165E 0.61 tolerated(0.26) benign(0.145) TCGA-FJ-A3ZE-01 17 63221386 63221386 G A RGS9 Silent p.E558E 0.39 TCGA-FJ-A3ZE-01 17 71426748 71426748 C T SDK2 Silent p.R495R 0.12 TCGA-FJ-A3ZE-01 17 72769175 72769175 C A NAT9 Missense_Mutation p.C65F 0.67 deleterious(0) probably_damaging(0.992) TCGA-FJ-A3ZE-01 17 73914079 73914079 C A FBF1 Missense_Mutation p.E758D 0.36 deleterious(0.01) benign(0.416) TCGA-FJ-A3ZE-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.86 deleterious(0) probably_damaging(0.991) TCGA-FJ-A3ZE-01 17 79207838 79207838 C G ENTHD2 Silent p.G106G 0.53 TCGA-FJ-A3ZE-01 17 79801895 79801895 T C P4HB Missense_Mutation p.E507G 0.59 deleterious(0) probably_damaging(0.986) TCGA-FJ-A3ZE-01 18 23713863 23713863 G T PSMA8 5'UTR 0.35 TCGA-FJ-A3ZE-01 18 28669557 28669557 C G DSC2 Missense_Mutation p.V159L 0.42 deleterious(0.04) benign(0.351) TCGA-FJ-A3ZE-01 18 28720107 28720107 G A DSC1 Missense_Mutation p.P473L 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-FJ-A3ZE-01 18 30350069 30350069 C A KLHL14 Missense_Mutation p.K162N 0.46 tolerated(0.44) benign(0.124) TCGA-FJ-A3ZE-01 18 30350105 30350105 G A KLHL14 Silent p.S150S 0.39 TCGA-FJ-A3ZE-01 18 34852990 34852990 G T CELF4 Missense_Mutation p.T313N 0.52 tolerated(0.15) probably_damaging(0.997) TCGA-FJ-A3ZE-01 18 55024154 55024154 C A ST8SIA3 Missense_Mutation p.L105I 0.54 benign(0.024) TCGA-FJ-A3ZE-01 19 10822952 10822953 - C QTRT1 Frame_Shift_Ins p.R256Pfs*11 0.13 TCGA-FJ-A3ZE-01 19 11040151 11040151 G T C19orf52 Missense_Mutation p.D186Y 0.71 deleterious(0.01) possibly_damaging(0.907) TCGA-FJ-A3ZE-01 19 11143966 11143966 G C SMARCA4 Missense_Mutation p.D1183H 0.69 probably_damaging(1) TCGA-FJ-A3ZE-01 19 11609127 11609127 C T ZNF653 Silent p.K109K 0.21 TCGA-FJ-A3ZE-01 19 12167103 12167103 G C ZNF878 5'Flank 0.50 TCGA-FJ-A3ZE-01 19 13988397 13988397 G A NANOS3 Missense_Mutation p.C112Y 0.52 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 19 15121757 15121757 G A CCDC105 Silent p.G40G 0.32 TCGA-FJ-A3ZE-01 19 15491178 15491178 C G AKAP8L Missense_Mutation p.A566P 0.50 tolerated(0.22) unknown(0) TCGA-FJ-A3ZE-01 19 18273235 18273235 A G PIK3R2 Missense_Mutation p.K343R 0.31 tolerated(0.07) benign(0.152) TCGA-FJ-A3ZE-01 19 19650559 19650559 C - CILP2 Frame_Shift_Del p.S47Hfs*69 0.36 TCGA-FJ-A3ZE-01 19 20117916 20117916 C A ZNF682 Missense_Mutation p.G132V 0.39 deleterious(0.04) possibly_damaging(0.604) TCGA-FJ-A3ZE-01 19 34832392 34832392 C A KIAA0355 Missense_Mutation p.A518D 0.48 deleterious(0.01) benign(0.047) TCGA-FJ-A3ZE-01 19 36303753 36303753 C G PRODH2 Silent p.L61L 0.46 TCGA-FJ-A3ZE-01 19 36365745 36365745 G A APLP1 Missense_Mutation p.E440K 0.49 tolerated(0.47) probably_damaging(0.996) TCGA-FJ-A3ZE-01 19 38896273 38896273 G C FAM98C Missense_Mutation p.E250Q 0.39 tolerated(0.1) benign(0.21) TCGA-FJ-A3ZE-01 19 39804639 39804639 C A LRFN1 Missense_Mutation p.R446S 0.26 tolerated(0.07) benign(0.101) TCGA-FJ-A3ZE-01 19 40477104 40477104 G T PSMC4 5'UTR 0.62 TCGA-FJ-A3ZE-01 19 42132180 42132180 T A CEACAM4 Silent p.A73A 0.61 TCGA-FJ-A3ZE-01 19 4280064 4280064 G A SHD Missense_Mutation p.A2T 0.89 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 19 44636769 44636769 A T ZNF225 Nonsense_Mutation p.K668* 0.68 TCGA-FJ-A3ZE-01 19 45860917 45860917 C G ERCC2 Silent p.P426P 0.17 TCGA-FJ-A3ZE-01 19 48845927 48845927 C G TMEM143 Missense_Mutation p.A279P 0.59 tolerated(0.05) probably_damaging(0.987) TCGA-FJ-A3ZE-01 19 48846055 48846055 T G TMEM143 Missense_Mutation p.K236T 0.62 tolerated(0.06) probably_damaging(0.982) TCGA-FJ-A3ZE-01 19 48965180 48965180 G A KCNJ14 Missense_Mutation p.G67S 0.59 tolerated(1) benign(0.104) TCGA-FJ-A3ZE-01 19 49385331 49385331 G A TULP2 Missense_Mutation p.R469W 0.17 deleterious(0) probably_damaging(0.994) TCGA-FJ-A3ZE-01 19 49649253 49649253 G - PPFIA3 Frame_Shift_Del p.T934Pfs*19 0.39 TCGA-FJ-A3ZE-01 19 49863219 49863219 G T TEAD2 Silent p.G38G 0.65 TCGA-FJ-A3ZE-01 19 50657922 50657922 C T IZUMO2 Silent p.Q186Q 0.21 TCGA-FJ-A3ZE-01 19 51329189 51329189 G A KLK15 Missense_Mutation p.P212S 0.62 deleterious(0) probably_damaging(0.986) TCGA-FJ-A3ZE-01 19 55915730 55915730 C A UBE2S Missense_Mutation p.A90S 0.59 tolerated(0.64) benign(0.059) TCGA-FJ-A3ZE-01 19 5693378 5693378 G T LONP1 Silent p.A878A 0.85 TCGA-FJ-A3ZE-01 19 5693379 5693379 G C LONP1 Missense_Mutation p.A878G 0.85 deleterious(0) probably_damaging(0.977) TCGA-FJ-A3ZE-01 19 58018245 58018245 A G ZNF773 Missense_Mutation p.D261G 0.24 tolerated(0.25) benign(0.38) TCGA-FJ-A3ZE-01 19 58384119 58384119 C G ZNF814 3'UTR 0.55 TCGA-FJ-A3ZE-01 19 5866680 5866680 C T FUT5 Missense_Mutation p.A353T 0.86 deleterious(0) probably_damaging(0.991) TCGA-FJ-A3ZE-01 19 6696452 6696452 G T C3 Missense_Mutation p.P963Q 0.61 tolerated(0.44) benign(0.002) TCGA-FJ-A3ZE-01 19 6828657 6828657 G T VAV1 Missense_Mutation p.V373F 0.06 deleterious(0) possibly_damaging(0.715) TCGA-FJ-A3ZE-01 19 8176067 8176067 T C FBN3 Missense_Mutation p.D1362G 0.14 deleterious(0.01) benign(0.433) TCGA-FJ-A3ZE-01 19 8376357 8376357 C G NDUFA7 3'UTR 0.10 TCGA-FJ-A3ZE-01 19 8609325 8609325 G A MYO1F Silent p.V460V 0.23 TCGA-FJ-A3ZE-01 19 9001859 9001859 T C MUC16 Silent p.R13463R 0.18 TCGA-FJ-A3ZE-01 19 9016999 9016999 G A MUC16 Missense_Mutation p.P12666S 0.15 benign(0.148) TCGA-FJ-A3ZE-01 19 9057120 9057120 G T MUC16 Missense_Mutation p.T10109N 0.17 benign(0.092) TCGA-FJ-A3ZE-01 19 9058002 9058002 G T MUC16 Missense_Mutation p.A9815D 0.34 unknown(0) TCGA-FJ-A3ZE-01 19 9086125 9086125 G T MUC16 Missense_Mutation p.T1897N 0.18 unknown(0) TCGA-FJ-A3ZE-01 19 9090068 9090068 C G MUC16 Missense_Mutation p.E583Q 0.78 unknown(0) TCGA-FJ-A3ZE-01 19 9868990 9868990 C T ZNF846 Missense_Mutation p.V255I 0.30 tolerated(0.08) benign(0.001) TCGA-FJ-A3ZE-01 19 9968097 9968097 G A OLFM2 Missense_Mutation p.A141V 0.22 deleterious(0.03) benign(0.103) TCGA-FJ-A3ZE-01 1 12057360 12057360 A G MFN2 Missense_Mutation p.N161D 0.93 tolerated(0.11) probably_damaging(0.974) TCGA-FJ-A3ZE-01 1 12251959 12251959 G T TNFRSF1B Missense_Mutation p.G146C 0.93 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 1 1248252 1248252 G A CPSF3L Silent p.G409G 0.93 TCGA-FJ-A3ZE-01 1 145209221 145209221 G C RP11-458D21.5 5'UTR 0.47 TCGA-FJ-A3ZE-01 1 145561389 145561389 C T ANKRD35 Silent p.G359G 0.40 TCGA-FJ-A3ZE-01 1 147091503 147091503 C T BCL9 Silent p.P514P 0.34 TCGA-FJ-A3ZE-01 1 149785176 149785176 G A HIST2H3D Silent p.L21L 0.19 TCGA-FJ-A3ZE-01 1 151611551 151611551 G A SNX27 Missense_Mutation p.V167I 0.39 tolerated(1) benign(0.003) TCGA-FJ-A3ZE-01 1 155104034 155104034 G A EFNA1 Silent p.L104L 0.34 TCGA-FJ-A3ZE-01 1 156294831 156294831 G C CCT3 Missense_Mutation p.H118Q 0.30 deleterious(0) probably_damaging(0.961) TCGA-FJ-A3ZE-01 1 157557731 157557731 A G FCRL4 Silent p.N162N 0.48 TCGA-FJ-A3ZE-01 1 157801731 157801731 C T CD5L 3'UTR 0.25 TCGA-FJ-A3ZE-01 1 158590242 158590242 G A SPTA1 Silent p.F2045F 0.25 TCGA-FJ-A3ZE-01 1 158641934 158641934 C A SPTA1 Missense_Mutation p.R468L 0.55 deleterious(0) possibly_damaging(0.792) TCGA-FJ-A3ZE-01 1 159802972 159802972 G A SLAMF8 Splice_Site p.X225_splice 0.62 TCGA-FJ-A3ZE-01 1 160209813 160209813 C A DCAF8 Nonsense_Mutation p.E133* 0.36 TCGA-FJ-A3ZE-01 1 165860506 165860506 C T UCK2 Silent p.I101I 0.27 TCGA-FJ-A3ZE-01 1 167096802 167096802 T G DUSP27 Missense_Mutation p.C812G 0.63 tolerated(0.09) benign(0) TCGA-FJ-A3ZE-01 1 167653169 167653169 C A RCSD1 Missense_Mutation p.D13E 0.27 tolerated(0.11) probably_damaging(0.982) TCGA-FJ-A3ZE-01 1 171765949 171765949 G A METTL13 3'UTR 0.21 TCGA-FJ-A3ZE-01 1 176863873 176863873 G A ASTN1 Missense_Mutation p.T922I 0.29 deleterious(0.02) benign(0.113) TCGA-FJ-A3ZE-01 1 178483197 178483197 G A TEX35 Silent p.K25K 0.31 TCGA-FJ-A3ZE-01 1 179783381 179783381 G A FAM163A 3'UTR 0.39 TCGA-FJ-A3ZE-01 1 180165664 180165664 A G QSOX1 Missense_Mutation p.D579G 0.33 tolerated(1) benign(0.001) TCGA-FJ-A3ZE-01 1 183933111 183933111 C A COLGALT2 Silent p.L292L 0.29 TCGA-FJ-A3ZE-01 1 185278644 185278644 C A IVNS1ABP Splice_Site 0.35 TCGA-FJ-A3ZE-01 1 19404471 19404471 T G UBR4 Missense_Mutation p.K5108T 0.96 benign(0.176) TCGA-FJ-A3ZE-01 1 198713182 198713182 G T PTPRC Splice_Site p.X900_splice 0.57 TCGA-FJ-A3ZE-01 1 201016656 201016656 C T CACNA1S Missense_Mutation p.G1514R 0.28 deleterious(0.04) probably_damaging(1) TCGA-FJ-A3ZE-01 1 201868633 201868633 G A LMOD1 Missense_Mutation p.A503V 0.45 benign(0.184) TCGA-FJ-A3ZE-01 1 211462527 211462527 C T RCOR3 Missense_Mutation p.T243I 0.38 tolerated(0.17) benign(0.034) TCGA-FJ-A3ZE-01 1 212002548 212002548 C A LPGAT1 Missense_Mutation p.V31F 0.43 deleterious(0.04) benign(0.004) TCGA-FJ-A3ZE-01 1 213224846 213224846 G T RPS6KC1 Missense_Mutation p.A34S 0.31 deleterious(0.04) probably_damaging(1) TCGA-FJ-A3ZE-01 1 214209181 214209181 T A PROX1 3'UTR 0.37 TCGA-FJ-A3ZE-01 1 232942439 232942439 G T MAP10 Missense_Mutation p.S557I 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-FJ-A3ZE-01 1 235275305 235275305 C A TOMM20 3'UTR 0.48 TCGA-FJ-A3ZE-01 1 235747123 235747123 A G GNG4 Missense_Mutation p.S6P 0.32 tolerated(0.33) benign(0.002) TCGA-FJ-A3ZE-01 1 236925893 236925893 G A ACTN2 Missense_Mutation p.A887T 0.08 tolerated(0.13) probably_damaging(0.999) TCGA-FJ-A3ZE-01 1 237753123 237753123 C A RYR2 Missense_Mutation p.A1210D 0.36 benign(0.051) TCGA-FJ-A3ZE-01 1 240374392 240374392 G C FMN2 Missense_Mutation p.D1308H 0.54 possibly_damaging(0.573) TCGA-FJ-A3ZE-01 1 247695441 247695441 C T OR2C3 Missense_Mutation p.A125T 0.28 tolerated(0.22) benign(0.181) TCGA-FJ-A3ZE-01 1 29638200 29638200 G C PTPRU Missense_Mutation p.D1011H 0.33 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 1 31346045 31346045 C T SDC3 3'UTR 0.94 TCGA-FJ-A3ZE-01 1 3742336 3742336 C A CEP104 Missense_Mutation p.D784Y 0.59 deleterious(0.01) possibly_damaging(0.473) TCGA-FJ-A3ZE-01 1 45480182 45480182 C T UROD Silent p.Y236Y 0.96 TCGA-FJ-A3ZE-01 1 55549036 55549036 T G USP24 Missense_Mutation p.Q2295P 0.79 tolerated(0.13) benign(0.087) TCGA-FJ-A3ZE-01 1 62240939 62240939 G T INADL Missense_Mutation p.G261V 0.38 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 1 62739459 62739459 G A KANK4 Silent p.S439S 0.52 TCGA-FJ-A3ZE-01 1 67147961 67147961 A T SGIP1 Missense_Mutation p.R408S 0.13 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-FJ-A3ZE-01 1 67436628 67436628 A G MIER1 Missense_Mutation p.K304E 0.34 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 1 74670542 74670542 G C FPGT Missense_Mutation p.D271H 0.54 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 1 91178154 91178154 C A BARHL2 Silent p.V293V 0.45 TCGA-FJ-A3ZE-01 1 93667528 93667528 G A CCDC18 Missense_Mutation p.A314T 0.49 tolerated(1) benign(0.106) TCGA-FJ-A3ZE-01 1 949869 949869 C A ISG15 3'UTR 0.98 TCGA-FJ-A3ZE-01 20 13134777 13134777 T - SPTLC3 Frame_Shift_Del p.V471* 0.19 TCGA-FJ-A3ZE-01 20 14307612 14307612 G A FLRT3 Missense_Mutation p.R181C 0.14 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 20 16030583 16030583 C G MACROD2 3'UTR 0.44 TCGA-FJ-A3ZE-01 20 17639309 17639309 C A RRBP1 Missense_Mutation p.S185I 0.35 tolerated(0.07) possibly_damaging(0.607) TCGA-FJ-A3ZE-01 20 2596782 2596782 G T TMC2 Splice_Site p.X625_splice 0.42 TCGA-FJ-A3ZE-01 20 30672193 30672193 G C HCK Splice_Site p.X228_splice 0.29 TCGA-FJ-A3ZE-01 20 30672279 30672279 G A HCK Silent p.E256E 0.26 TCGA-FJ-A3ZE-01 20 34085680 34085680 G A CEP250 Missense_Mutation p.A1147T 0.58 benign(0.113) TCGA-FJ-A3ZE-01 20 377174 377174 C - TRIB3 Frame_Shift_Del p.T307Qfs*16 0.19 TCGA-FJ-A3ZE-01 20 3845324 3845324 G T MAVS Missense_Mutation p.L349F 0.24 deleterious(0) probably_damaging(0.995) TCGA-FJ-A3ZE-01 20 40033665 40033665 C G CHD6 Missense_Mutation p.K2572N 0.27 tolerated(0.07) benign(0.158) TCGA-FJ-A3ZE-01 20 43933116 43933116 C T MATN4 Missense_Mutation p.R132Q 0.19 probably_damaging(0.987) TCGA-FJ-A3ZE-01 20 45912357 45912357 T C ZMYND8 Silent p.L280L 0.13 TCGA-FJ-A3ZE-01 20 45927519 45927519 C A ZMYND8 Missense_Mutation p.R136I 0.60 deleterious(0) benign(0.306) TCGA-FJ-A3ZE-01 20 47864087 47864088 - GGC ZNFX1 In_Frame_Ins p.G1824_L1825insR 0.30 TCGA-FJ-A3ZE-01 20 50048713 50048713 G A NFATC2 Silent p.S871S 0.30 TCGA-FJ-A3ZE-01 20 61050567 61050567 C T GATA5 Missense_Mutation p.S4N 0.29 deleterious(0) probably_damaging(0.988) TCGA-FJ-A3ZE-01 20 62162261 62162261 C T PTK6 Silent p.L284L 0.69 TCGA-FJ-A3ZE-01 20 62337724 62337724 C T ARFRP1 Silent p.Q83Q 0.27 TCGA-FJ-A3ZE-01 20 62705211 62705211 C A RGS19 Missense_Mutation p.A217S 0.67 tolerated_low_confidence(0.4) benign(0.003) TCGA-FJ-A3ZE-01 20 7980425 7980425 G C TMX4 Missense_Mutation p.Q141E 0.24 tolerated(1) benign(0.014) TCGA-FJ-A3ZE-01 20 869075 869075 T A ANGPT4 Missense_Mutation p.N158I 0.14 deleterious(0) probably_damaging(0.96) TCGA-FJ-A3ZE-01 21 11039328 11039328 C T BAGE2 RNA 0.06 TCGA-FJ-A3ZE-01 21 28296648 28296648 G T ADAMTS5 Silent p.P839P 0.35 TCGA-FJ-A3ZE-01 21 28296649 28296649 G T ADAMTS5 Missense_Mutation p.P839H 0.35 tolerated(0.1) possibly_damaging(0.907) TCGA-FJ-A3ZE-01 21 33297057 33297057 C T HUNK Missense_Mutation p.A180V 0.45 tolerated(0.27) benign(0.434) TCGA-FJ-A3ZE-01 21 37721694 37721694 C A MORC3 Missense_Mutation p.T364N 0.45 deleterious(0.04) possibly_damaging(0.677) TCGA-FJ-A3ZE-01 21 40795035 40795035 A G LCA5L Missense_Mutation p.L235S 0.41 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 21 42845396 42845396 C A TMPRSS2 Missense_Mutation p.R289L 0.54 tolerated(0.64) benign(0.013) TCGA-FJ-A3ZE-01 22 19864595 19864595 C A TXNRD2 3'UTR 0.46 TCGA-FJ-A3ZE-01 22 19965049 19965049 G T ARVCF Missense_Mutation p.P587T 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-FJ-A3ZE-01 22 23040596 23040596 C T IGLV2-23 Intron 0.68 TCGA-FJ-A3ZE-01 22 23495282 23495282 A G RAB36 Missense_Mutation p.E163G 0.39 deleterious(0) probably_damaging(0.954) TCGA-FJ-A3ZE-01 22 23626223 23626223 G C BCR Silent p.L725L 0.29 TCGA-FJ-A3ZE-01 22 30416019 30416019 G T MTMR3 Missense_Mutation p.V791F 0.41 tolerated_low_confidence(0.1) benign(0.128) TCGA-FJ-A3ZE-01 22 30780398 30780398 C T RNF215 Missense_Mutation p.G225D 0.48 deleterious(0) possibly_damaging(0.783) TCGA-FJ-A3ZE-01 22 31491427 31491427 G A SMTN Missense_Mutation p.V591I 0.48 tolerated(0.3) benign(0.026) TCGA-FJ-A3ZE-01 22 37266564 37266564 C G NCF4 Silent p.L150L 0.39 TCGA-FJ-A3ZE-01 22 44332964 44332964 C T PNPLA3 Missense_Mutation p.S264L 0.37 tolerated(0.91) benign(0) TCGA-FJ-A3ZE-01 22 45601541 45601541 C T KIAA0930 Silent p.G133G 0.37 TCGA-FJ-A3ZE-01 22 50658876 50658876 T C TUBGCP6 Silent p.S1304S 0.36 TCGA-FJ-A3ZE-01 22 50694610 50694610 C G MAPK12 Missense_Mutation p.A175P 0.34 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 22 51044009 51044009 G T MAPK8IP2 Missense_Mutation p.D620Y 0.35 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 2 103120009 103120009 C A SLC9A4 Missense_Mutation p.L275I 0.41 tolerated(0.65) benign(0.006) TCGA-FJ-A3ZE-01 2 113941042 113941042 G C PSD4 Missense_Mutation p.A337P 0.45 tolerated_low_confidence(0.07) benign(0.006) TCGA-FJ-A3ZE-01 2 1168818 1168818 C T SNTG2 Silent p.S180S 0.86 TCGA-FJ-A3ZE-01 2 121107164 121107164 G C INHBB Missense_Mutation p.R313P 0.41 deleterious(0) probably_damaging(0.988) TCGA-FJ-A3ZE-01 2 127821519 127821519 G A BIN1 Silent p.L230L 0.51 TCGA-FJ-A3ZE-01 2 131103212 131103212 G T IMP4 Missense_Mutation p.A127S 0.44 tolerated(0.42) benign(0.101) TCGA-FJ-A3ZE-01 2 131521341 131521341 C G AMER3 Missense_Mutation p.Q566E 0.43 tolerated(0.14) benign(0.214) TCGA-FJ-A3ZE-01 2 132235813 132235813 A G TUBA3D Missense_Mutation p.E27G 0.35 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-FJ-A3ZE-01 2 138414682 138414682 A T THSD7B Missense_Mutation p.N1446Y 0.46 deleterious(0.05) unknown(0) TCGA-FJ-A3ZE-01 2 143959730 143959730 C T ARHGAP15 Nonsense_Mutation p.Q65* 0.32 TCGA-FJ-A3ZE-01 2 162865119 162865119 A G DPP4 Missense_Mutation p.F647S 0.45 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZE-01 2 1652481 1652481 G T PXDN Missense_Mutation p.A1024E 1.00 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 2 166901824 166901824 G A SCN1A Missense_Mutation p.A464V 0.36 tolerated(0.28) benign(0) TCGA-FJ-A3ZE-01 2 166903446 166903446 A G SCN1A Missense_Mutation p.V404A 0.57 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3ZE-01 2 171260816 171260816 G A MYO3B Silent p.P779P 0.23 TCGA-FJ-A3ZE-01 2 179403929 179403929 C T TTN Silent p.K32911K 0.23 TCGA-FJ-A3ZE-01 2 179593726 179593726 C A TTN Missense_Mutation p.A6347S 0.53 TCGA-FJ-A3ZE-01 2 17962140 17962140 A C GEN1 Missense_Mutation p.Q554P 0.94 deleterious(0.03) benign(0.025) TCGA-FJ-A3ZE-01 2 182403985 182403985 A T CERKL Missense_Mutation p.F484I 0.48 deleterious(0) possibly_damaging(0.792) TCGA-FJ-A3ZE-01 2 190428407 190428407 C A SLC40A1 Silent p.G435G 0.44 TCGA-FJ-A3ZE-01 2 192255219 192255219 G C MYO1B Splice_Site p.X661_splice 0.43 TCGA-FJ-A3ZE-01 2 192275843 192275843 G T MYO1B Nonsense_Mutation p.E940* 0.14 TCGA-FJ-A3ZE-01 2 203103160 203103160 T C SUMO1 Intron 0.43 TCGA-FJ-A3ZE-01 2 206631519 206631519 C T NRP2 Missense_Mutation p.A806V 0.48 tolerated(0.12) benign(0.242) TCGA-FJ-A3ZE-01 2 207170202 207170202 C T ZDBF2 Missense_Mutation p.S317F 0.35 tolerated(0.27) benign(0.002) TCGA-FJ-A3ZE-01 2 216240428 216240428 G A FN1 Silent p.G1967G 0.33 TCGA-FJ-A3ZE-01 2 233635823 233635823 C T KCNJ13 Missense_Mutation p.D84N 0.57 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 2 238275417 238275417 G C COL6A3 Missense_Mutation p.L1805V 0.43 probably_damaging(0.998) TCGA-FJ-A3ZE-01 2 240969849 240969849 C G OR6B2 5'UTR 0.56 TCGA-FJ-A3ZE-01 2 32715215 32715215 A C BIRC6 Missense_Mutation p.N2735H 0.90 benign(0.36) TCGA-FJ-A3ZE-01 2 42990186 42990186 G A OXER1 Silent p.G378G 0.95 TCGA-FJ-A3ZE-01 2 47702220 47702220 G T MSH2 Missense_Mutation p.V606F 0.87 deleterious(0) probably_damaging(0.934) TCGA-FJ-A3ZE-01 2 62081096 62081096 G A FAM161A Silent p.V27V 0.75 TCGA-FJ-A3ZE-01 2 96542225 96542225 G A ANKRD36C Nonsense_Mutation p.Q195* 0.26 TCGA-FJ-A3ZE-01 2 96798412 96798412 C A ASTL Silent p.L168L 0.33 TCGA-FJ-A3ZE-01 2 97482025 97482025 C A CNNM3 Missense_Mutation p.A4E 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-FJ-A3ZE-01 2 98422040 98422040 C T TMEM131 Missense_Mutation p.D728N 0.43 tolerated(0.29) possibly_damaging(0.51) TCGA-FJ-A3ZE-01 3 11058855 11058855 C T SLC6A1 5'UTR 0.13 TCGA-FJ-A3ZE-01 3 113286403 113286403 A G SIDT1 Missense_Mutation p.N121D 0.37 tolerated(0.62) benign(0.028) TCGA-FJ-A3ZE-01 3 115805390 115805390 C A LSAMP Missense_Mutation p.D57Y 0.62 deleterious(0) probably_damaging(0.992) TCGA-FJ-A3ZE-01 3 11600188 11600188 C G VGLL4 Missense_Mutation p.D245H 0.46 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 3 119128361 119128361 C A ARHGAP31 Missense_Mutation p.A555E 0.32 tolerated(0.36) benign(0.358) TCGA-FJ-A3ZE-01 3 124048787 124048787 C G KALRN Missense_Mutation p.A453G 0.49 tolerated(0.07) benign(0.03) TCGA-FJ-A3ZE-01 3 12422901 12422902 - C PPARG Frame_Shift_Ins p.N132Qfs*7 0.16 TCGA-FJ-A3ZE-01 3 129284333 129284333 C A PLXND1 Missense_Mutation p.E1457D 0.55 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 3 131208827 131208827 G T MRPL3 Missense_Mutation p.P189Q 0.37 deleterious(0.02) possibly_damaging(0.625) TCGA-FJ-A3ZE-01 3 150931787 150931787 G A P2RY14 Silent p.Y106Y 0.53 TCGA-FJ-A3ZE-01 3 155615800 155615800 G T GMPS Missense_Mutation p.K98N 0.50 deleterious(0.04) probably_damaging(0.913) TCGA-FJ-A3ZE-01 3 160156689 160156689 C A TRIM59 Missense_Mutation p.V95F 0.41 deleterious(0.03) benign(0.328) TCGA-FJ-A3ZE-01 3 164907895 164907895 G T SLITRK3 Missense_Mutation p.Q242K 0.34 tolerated(0.2) possibly_damaging(0.612) TCGA-FJ-A3ZE-01 3 185198111 185198111 G A MAP3K13 Missense_Mutation p.D865N 0.52 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-FJ-A3ZE-01 3 191074896 191074896 C T CCDC50 Silent p.V23V 0.34 TCGA-FJ-A3ZE-01 3 19389402 19389402 C A KCNH8 Silent p.S252S 0.68 TCGA-FJ-A3ZE-01 3 195968895 195968895 C T PCYT1A Missense_Mutation p.R211Q 0.35 deleterious(0.04) benign(0.023) TCGA-FJ-A3ZE-01 3 19925991 19925991 G C EFHB Missense_Mutation p.L684V 0.26 tolerated(0.79) benign(0.005) TCGA-FJ-A3ZE-01 3 26751006 26751006 G T LRRC3B Intron 0.59 TCGA-FJ-A3ZE-01 3 27326389 27326389 G T NEK10 Missense_Mutation p.S618Y 0.16 deleterious(0.03) probably_damaging(0.978) TCGA-FJ-A3ZE-01 3 2908487 2908487 G A CNTN4 Missense_Mutation p.R169H 0.32 deleterious(0.02) possibly_damaging(0.902) TCGA-FJ-A3ZE-01 3 38649641 38649641 C T SCN5A Splice_Site p.X333_splice 0.63 TCGA-FJ-A3ZE-01 3 48684347 48684347 T C CELSR3 Missense_Mutation p.S2382G 0.82 tolerated(0.31) benign(0.005) TCGA-FJ-A3ZE-01 3 88039908 88039908 C A HTR1F Missense_Mutation p.F3L 0.37 tolerated(0.67) benign(0.003) TCGA-FJ-A3ZE-01 4 10084738 10084738 C A WDR1 Silent p.V368V 0.40 TCGA-FJ-A3ZE-01 4 10100674 10100674 C A WDR1 Missense_Mutation p.D107Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZE-01 4 106858277 106858277 C T NPNT Missense_Mutation p.S156F 0.26 deleterious(0) probably_damaging(0.99) TCGA-FJ-A3ZE-01 4 114276414 114276414 C A ANK2 Missense_Mutation p.P2214T 0.40 probably_damaging(1) TCGA-FJ-A3ZE-01 4 121958321 121958321 G A NDNF Nonsense_Mutation p.Q269* 0.36 TCGA-FJ-A3ZE-01 4 126336381 126336381 C T FAT4 Missense_Mutation p.T2088I 0.52 benign(0.219) TCGA-FJ-A3ZE-01 4 146807045 146807045 C A ZNF827 Missense_Mutation p.S511I 0.54 tolerated(0.05) benign(0.017) TCGA-FJ-A3ZE-01 4 155158070 155158070 C A DCHS2 Missense_Mutation p.W2123C 0.45 deleterious(0) probably_damaging(0.974) TCGA-FJ-A3ZE-01 4 162463736 162463736 C T FSTL5 Silent p.L375L 0.41 TCGA-FJ-A3ZE-01 4 1656734 1656734 G A FAM53A Missense_Mutation p.P285S 0.32 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3ZE-01 4 177098267 177098267 G A WDR17 Missense_Mutation p.E1209K 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-FJ-A3ZE-01 4 1803564 1803564 C T FGFR3 Missense_Mutation p.R248C 0.14 deleterious(0) probably_damaging(0.977) TCGA-FJ-A3ZE-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.14 deleterious(0.01) possibly_damaging(0.594) TCGA-FJ-A3ZE-01 4 186188167 186188167 A G SNX25 Missense_Mutation p.N153D 0.37 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 4 189068457 189068457 C A TRIML1 Silent p.S446S 0.30 TCGA-FJ-A3ZE-01 4 2941321 2941327 GGCAGAG - NOP14 Frame_Shift_Del p.L749Gfs*3 0.32 TCGA-FJ-A3ZE-01 4 367619 367619 C A ZNF141 Missense_Mutation p.H465N 0.49 tolerated(0.45) benign(0.012) TCGA-FJ-A3ZE-01 4 4459161 4459161 T A STX18 Missense_Mutation p.D140V 0.58 tolerated(0.22) benign(0.091) TCGA-FJ-A3ZE-01 4 68693203 68693203 C G TMPRSS11D Missense_Mutation p.G243A 0.43 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 4 71472154 71472154 G A AMBN Missense_Mutation p.A351T 0.21 tolerated(0.09) benign(0.073) TCGA-FJ-A3ZE-01 4 73013158 73013158 G A NPFFR2 Missense_Mutation p.D400N 0.48 deleterious(0) probably_damaging(0.989) TCGA-FJ-A3ZE-01 4 75937717 75937717 G T PARM1 Missense_Mutation p.W42C 0.35 deleterious(0) probably_damaging(0.948) TCGA-FJ-A3ZE-01 4 8383332 8383332 C T ACOX3 Missense_Mutation p.A514T 0.37 tolerated(0.33) benign(0.166) TCGA-FJ-A3ZE-01 4 85598394 85598394 C G WDFY3 Missense_Mutation p.R3472T 0.32 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3ZE-01 4 90856744 90856744 A G MMRN1 Missense_Mutation p.Q638R 0.36 tolerated(0.07) benign(0.055) TCGA-FJ-A3ZE-01 4 94343960 94343960 T A GRID2 Silent p.G462G 0.49 TCGA-FJ-A3ZE-01 4 96222783 96222783 C T UNC5C Missense_Mutation p.S155N 0.53 deleterious(0) probably_damaging(0.947) TCGA-FJ-A3ZE-01 5 10254301 10254301 A C CCT5 Silent p.T50T 0.39 TCGA-FJ-A3ZE-01 5 1064299 1064299 G T SLC12A7 Missense_Mutation p.Q836K 0.34 tolerated(0.32) benign(0.028) TCGA-FJ-A3ZE-01 5 11199772 11199772 A C CTNND2 Missense_Mutation p.I588R 0.39 deleterious(0) probably_damaging(0.976) TCGA-FJ-A3ZE-01 5 118485427 118485427 C A DMXL1 Missense_Mutation p.P1302H 0.71 tolerated(0.55) possibly_damaging(0.877) TCGA-FJ-A3ZE-01 5 126754869 126754869 C T MEGF10 Missense_Mutation p.R455C 0.18 tolerated(0.06) benign(0.205) TCGA-FJ-A3ZE-01 5 140167598 140167598 G A PCDHA1 Missense_Mutation p.G575S 0.68 tolerated_low_confidence(0.29) benign(0.018) TCGA-FJ-A3ZE-01 5 140209725 140209725 G A PCDHA6 Silent p.S683S 0.73 TCGA-FJ-A3ZE-01 5 140755960 140755960 C A PCDHGA6 Missense_Mutation p.F770L 0.73 deleterious_low_confidence(0.01) benign(0.109) TCGA-FJ-A3ZE-01 5 1441523 1441523 G T SLC6A3 Missense_Mutation p.F123L 0.59 deleterious(0) benign(0.1) TCGA-FJ-A3ZE-01 5 148417947 148417947 C - SH3TC2 Frame_Shift_Del p.L305Ffs*22 0.21 TCGA-FJ-A3ZE-01 5 149792313 149792313 C T CD74 5'UTR 0.75 TCGA-FJ-A3ZE-01 5 150925116 150925116 C G FAT2 Missense_Mutation p.V1858L 0.19 probably_damaging(0.999) TCGA-FJ-A3ZE-01 5 150945387 150945387 C A FAT2 Missense_Mutation p.V1036L 0.16 benign(0.286) TCGA-FJ-A3ZE-01 5 154393911 154393911 G T KIF4B Silent p.R164R 0.14 TCGA-FJ-A3ZE-01 5 15928355 15928355 G A FBXL7 Missense_Mutation p.E162K 0.32 tolerated(0.27) benign(0.027) TCGA-FJ-A3ZE-01 5 169101351 169101351 G C DOCK2 Silent p.L124L 0.68 TCGA-FJ-A3ZE-01 5 176815166 176815166 G T SLC34A1 Missense_Mutation p.E272D 0.76 tolerated(0.95) benign(0.007) TCGA-FJ-A3ZE-01 5 178410002 178410002 G A GRM6 Missense_Mutation p.A782V 0.75 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3ZE-01 5 33576746 33576746 A T ADAMTS12 Missense_Mutation p.L1129M 0.28 tolerated(0.11) possibly_damaging(0.472) TCGA-FJ-A3ZE-01 5 35700720 35700720 A C SPEF2 Missense_Mutation p.K755T 0.22 deleterious(0.03) possibly_damaging(0.501) TCGA-FJ-A3ZE-01 5 52183724 52183724 C G ITGA1 Missense_Mutation p.S284C 0.19 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZE-01 6 102372594 102372594 G A GRIK2 Missense_Mutation p.G623S 0.24 deleterious(0.01) probably_damaging(1) TCGA-FJ-A3ZE-01 6 129636975 129636975 T C LAMA2 Silent p.S1268S 0.52 TCGA-FJ-A3ZE-01 6 13644837 13644837 G A RANBP9 Missense_Mutation p.A351V 0.45 tolerated(0.22) possibly_damaging(0.612) TCGA-FJ-A3ZE-01 6 143784110 143784110 G A PEX3 Missense_Mutation p.S88N 0.55 tolerated(0.24) benign(0.014) TCGA-FJ-A3ZE-01 6 170862291 170862291 C G PSMB1 Missense_Mutation p.D14H 0.30 deleterious(0.05) benign(0.117) TCGA-FJ-A3ZE-01 6 24716501 24716501 T G C6orf62 Missense_Mutation p.N61H 0.50 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZE-01 6 26043564 26043564 C - HIST1H2BB Frame_Shift_Del p.A108Lfs*? 0.41 TCGA-FJ-A3ZE-01 6 30571979 30571979 C A PPP1R10 Silent p.L438L 0.47 TCGA-FJ-A3ZE-01 6 3154784 3154784 C G TUBB2A Silent p.L217L 0.35 TCGA-FJ-A3ZE-01 6 31695007 31695007 C A DDAH2 3'UTR 0.50 TCGA-FJ-A3ZE-01 6 41621214 41621214 G T MDFI Silent p.L214L 0.46 TCGA-FJ-A3ZE-01 6 42689673 42689673 G T PRPH2 Missense_Mutation p.L134I 0.44 deleterious(0.01) benign(0.44) TCGA-FJ-A3ZE-01 6 43418276 43418276 A G DLK2 3'UTR 0.46 TCGA-FJ-A3ZE-01 6 55378838 55378838 A T HMGCLL1 Intron 0.56 TCGA-FJ-A3ZE-01 6 656803 656803 C G HUS1B Missense_Mutation p.G48R 0.67 deleterious(0.01) benign(0.249) TCGA-FJ-A3ZE-01 6 70890380 70890380 G T COL19A1 Missense_Mutation p.G914C 0.48 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 6 76751757 76751757 A G IMPG1 Missense_Mutation p.Y52H 0.51 tolerated(0.49) benign(0.006) TCGA-FJ-A3ZE-01 6 81053569 81053569 C A BCKDHB 3'UTR 0.49 TCGA-FJ-A3ZE-01 6 86227735 86227735 T C SNX14 Silent p.L713L 0.46 TCGA-FJ-A3ZE-01 6 88173977 88173977 A C C6ORF165 3'UTR 0.54 TCGA-FJ-A3ZE-01 6 89808433 89808433 G A SRSF12 Missense_Mutation p.S217F 0.48 tolerated_low_confidence(0.07) benign(0.013) TCGA-FJ-A3ZE-01 6 89910940 89910940 G T GABRR1 Missense_Mutation p.T73K 0.42 tolerated(0.93) benign(0.097) TCGA-FJ-A3ZE-01 6 90661238 90661238 G T BACH2 Missense_Mutation p.A196D 0.48 tolerated(0.6) benign(0.068) TCGA-FJ-A3ZE-01 7 100610083 100610083 G A MUC3A Silent p.E856E 0.18 TCGA-FJ-A3ZE-01 7 101944428 101944428 G C SH2B2 Silent p.G241G 0.54 TCGA-FJ-A3ZE-01 7 105190500 105190500 A G RINT1 Splice_Site p.X333_splice 0.43 TCGA-FJ-A3ZE-01 7 117424464 117424464 C T CTTNBP2 Missense_Mutation p.A705T 0.53 deleterious(0.01) possibly_damaging(0.493) TCGA-FJ-A3ZE-01 7 128850354 128850354 G A SMO Silent p.K539K 0.39 TCGA-FJ-A3ZE-01 7 135376027 135376027 C G SLC13A4 Missense_Mutation p.W455C 0.40 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 7 141747614 141747614 C A MGAM Missense_Mutation p.A843D 0.39 deleterious(0) probably_damaging(0.971) TCGA-FJ-A3ZE-01 7 149482090 149482090 G A SSPO RNA 0.54 TCGA-FJ-A3ZE-01 7 150878038 150878038 C G ASB10 Silent p.G364G 0.48 TCGA-FJ-A3ZE-01 7 157874068 157874068 C A PTPRN2 Missense_Mutation p.V549F 0.52 deleterious(0) probably_damaging(0.993) TCGA-FJ-A3ZE-01 7 158824638 158824638 C T VIPR2 Silent p.G364G 0.48 TCGA-FJ-A3ZE-01 7 17379440 17379440 G T AHR Missense_Mutation p.C664F 0.50 tolerated_low_confidence(0.11) benign(0.018) TCGA-FJ-A3ZE-01 7 2404033 2404033 G A EIF3B Nonsense_Mutation p.W342* 0.50 TCGA-FJ-A3ZE-01 7 26236509 26236509 T C HNRNPA2B1 Missense_Mutation p.I143M 0.53 deleterious(0.03) unknown(0) TCGA-FJ-A3ZE-01 7 4153858 4153858 G T SDK1 Missense_Mutation p.G1259W 0.54 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 7 43503285 43503285 C G HECW1 Missense_Mutation p.A893G 0.42 tolerated(0.06) possibly_damaging(0.581) TCGA-FJ-A3ZE-01 7 44042222 44042222 C T SPDYE1 Missense_Mutation p.S98F 0.38 tolerated(0.22) possibly_damaging(0.707) TCGA-FJ-A3ZE-01 7 45725689 45725689 C - ADCY1 Frame_Shift_Del p.L735Wfs*7 0.35 TCGA-FJ-A3ZE-01 7 5103373 5103373 G A RBAK-RBAKDN Intron 0.41 TCGA-FJ-A3ZE-01 7 66767776 66767776 C T STAG3L4 RNA 0.37 TCGA-FJ-A3ZE-01 7 73101013 73101013 A G WBSCR22 Missense_Mutation p.E45G 0.43 deleterious(0) probably_damaging(0.997) TCGA-FJ-A3ZE-01 7 7636000 7636000 C A MIOS Missense_Mutation p.S770Y 0.10 deleterious(0.03) possibly_damaging(0.461) TCGA-FJ-A3ZE-01 7 84628764 84628764 C T SEMA3D Missense_Mutation p.A776T 0.36 tolerated(0.07) benign(0.001) TCGA-FJ-A3ZE-01 7 87179515 87179515 T C ABCB1 Missense_Mutation p.Q441R 0.41 deleterious(0.01) possibly_damaging(0.61) TCGA-FJ-A3ZE-01 7 98487961 98487961 G A TRRAP Missense_Mutation p.V52I 0.48 benign(0.097) TCGA-FJ-A3ZE-01 8 110489565 110489565 G A PKHD1L1 Missense_Mutation p.C3010Y 0.54 deleterious(0) probably_damaging(0.984) TCGA-FJ-A3ZE-01 8 121279123 121279123 G A COL14A1 Splice_Site p.X1025_splice 0.45 TCGA-FJ-A3ZE-01 8 144671790 144671790 C A EEF1D Silent p.V154V 0.60 TCGA-FJ-A3ZE-01 8 1497669 1497669 G C DLGAP2 Missense_Mutation p.K270N 0.90 deleterious(0.01) probably_damaging(0.999) TCGA-FJ-A3ZE-01 8 22034465 22034465 G - BMP1 Intron 0.80 TCGA-FJ-A3ZE-01 8 27297834 27297834 G C PTK2B Missense_Mutation p.E639Q 0.49 deleterious(0) possibly_damaging(0.884) TCGA-FJ-A3ZE-01 8 27327365 27327365 G A CHRNA2 Silent p.G69G 0.90 TCGA-FJ-A3ZE-01 8 2944710 2944710 A T CSMD1 Silent p.P2461P 0.95 TCGA-FJ-A3ZE-01 8 33371055 33371055 C A TTI2 5'UTR 0.85 TCGA-FJ-A3ZE-01 8 37698748 37698748 G T GPR124 Missense_Mutation p.R964S 0.20 tolerated(0.79) benign(0.033) TCGA-FJ-A3ZE-01 8 37702487 37702487 G A BRF2 Missense_Mutation p.P261S 0.81 tolerated(0.13) possibly_damaging(0.54) TCGA-FJ-A3ZE-01 8 39103645 39103645 C T ADAM32 Missense_Mutation p.A621V 0.14 tolerated(0.4) benign(0.05) TCGA-FJ-A3ZE-01 8 54142079 54142079 A G OPRK1 Silent p.A307A 0.50 TCGA-FJ-A3ZE-01 8 56717578 56717578 C T TGS1 Missense_Mutation p.A709V 0.41 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZE-01 8 59409268 59409268 G A CYP7A1 Missense_Mutation p.S268F 0.42 deleterious(0.01) possibly_damaging(0.755) TCGA-FJ-A3ZE-01 8 72211327 72211327 G C EYA1 Missense_Mutation p.P261A 0.39 tolerated(0.27) possibly_damaging(0.784) TCGA-FJ-A3ZE-01 8 87568404 87568404 T G CPNE3 Missense_Mutation p.N443K 0.48 tolerated(0.29) benign(0.347) TCGA-FJ-A3ZE-01 8 99441294 99441294 G T KCNS2 Missense_Mutation p.A363S 0.51 tolerated(0.09) probably_damaging(0.994) TCGA-FJ-A3ZE-01 9 100124558 100124558 C A CCDC180 Missense_Mutation p.S1290Y 0.47 tolerated(1) benign(0.001) TCGA-FJ-A3ZE-01 9 101148053 101148053 G A GABBR2 Missense_Mutation p.L511F 0.39 tolerated(0.4) benign(0.343) TCGA-FJ-A3ZE-01 9 111618174 111618174 C A ACTL7B Missense_Mutation p.A13S 0.07 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FJ-A3ZE-01 9 111624682 111624682 C T ACTL7A Missense_Mutation p.A27V 0.43 tolerated_low_confidence(0.44) benign(0) TCGA-FJ-A3ZE-01 9 112168843 112168843 C - PTPN3 Frame_Shift_Del p.G564Afs*13 0.33 TCGA-FJ-A3ZE-01 9 114204677 114204677 C A KIAA0368 Missense_Mutation p.G278C 0.32 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZE-01 9 116060181 116060181 C A RNF183 Missense_Mutation p.G95V 0.55 deleterious(0.02) possibly_damaging(0.849) TCGA-FJ-A3ZE-01 9 130869808 130869808 A G SLC25A25 3'UTR 0.53 TCGA-FJ-A3ZE-01 9 130886051 130886051 C T PTGES2 Missense_Mutation p.G206S 0.47 tolerated(0.43) benign(0.012) TCGA-FJ-A3ZE-01 9 131516169 131516169 G C ZER1 Missense_Mutation p.D76E 0.33 deleterious(0.05) benign(0.012) TCGA-FJ-A3ZE-01 9 135553561 135553561 G C GTF3C4 Silent p.L185L 0.52 TCGA-FJ-A3ZE-01 9 136321188 136321188 C A ADAMTS13 Intron 0.35 TCGA-FJ-A3ZE-01 9 136323081 136323081 G A ADAMTS13 Silent p.S1314S 0.52 TCGA-FJ-A3ZE-01 9 138719397 138719397 G C CAMSAP1 Missense_Mutation p.P360R 0.36 deleterious(0) possibly_damaging(0.822) TCGA-FJ-A3ZE-01 9 139418227 139418227 G A NOTCH1 Silent p.G115G 0.55 TCGA-FJ-A3ZE-01 9 139751262 139751262 C A MAMDC4 Missense_Mutation p.D607E 0.42 deleterious(0) benign(0.066) TCGA-FJ-A3ZE-01 9 140330634 140330634 T G ENTPD8 Missense_Mutation p.H294P 0.41 tolerated(0.51) benign(0) TCGA-FJ-A3ZE-01 9 2115870 2115870 G T SMARCA2 Missense_Mutation p.V1169F 0.86 benign(0.403) TCGA-FJ-A3ZE-01 9 21187497 21187497 G A IFNA4 Silent p.L12L 0.79 TCGA-FJ-A3ZE-01 9 33166812 33166812 A T B4GALT1 Missense_Mutation p.V119E 0.39 tolerated(1) benign(0.001) TCGA-FJ-A3ZE-01 9 33468850 33468850 C A NOL6 Silent p.G349G 0.41 TCGA-FJ-A3ZE-01 9 5233806 5233806 C A INSL4 Missense_Mutation p.R117S 0.86 tolerated_low_confidence(0.9) benign(0.004) TCGA-FJ-A3ZE-01 9 77502828 77502828 C G TRPM6 5'UTR 0.59 TCGA-FJ-A3ZE-01 9 84607839 84607839 G T SPATA31D1 Silent p.G818G 0.38 TCGA-FJ-A3ZE-01 9 86590433 86590433 T C HNRNPK Intron 0.43 TCGA-FJ-A3ZE-01 9 88961372 88961372 G T ZCCHC6 Missense_Mutation p.P182T 0.38 tolerated(0.13) benign(0.047) TCGA-FJ-A3ZE-01 X 105855265 105855265 G C CXorf57 5'UTR 0.97 TCGA-FJ-A3ZE-01 X 123184129 123184130 AA - STAG2 Frame_Shift_Del p.K330Ifs*8 0.51 TCGA-FJ-A3ZE-01 X 12939700 12939700 G C TLR8 Silent p.L847L 0.89 TCGA-FJ-A3ZE-01 X 153037013 153037013 G A PLXNB3 Missense_Mutation p.C830Y 1.00 deleterious(0) probably_damaging(0.997) TCGA-FJ-A3ZE-01 X 18622501 18622501 C A CDKL5 Missense_Mutation p.A486D 0.87 deleterious_low_confidence(0) benign(0.023) TCGA-FJ-A3ZE-01 X 18622521 18622521 A G CDKL5 Missense_Mutation p.S493G 0.85 deleterious_low_confidence(0) benign(0.153) TCGA-FJ-A3ZE-01 X 26157994 26157994 G T MAGEB18 Missense_Mutation p.A298S 0.92 tolerated(0.12) benign(0.408) TCGA-FJ-A3ZE-01 X 44918557 44918558 - G KDM6A Frame_Shift_Ins p.D348Gfs*16 0.47 TCGA-FJ-A3ZE-01 X 57936038 57936038 G A ZXDA Silent p.L273L 0.82 TCGA-FJ-A3ZE-01 X 73064405 73064405 C T XIST RNA 0.82 TCGA-FJ-A3ZE-01 X 77271359 77271359 A G ATP7A Silent p.V869V 0.99 TCGA-FJ-A3ZF-01 10 103906993 103906993 C T PPRC1 Missense_Mutation p.S1415L 0.68 tolerated_low_confidence(0.06) benign(0.034) TCGA-FJ-A3ZF-01 10 105202183 105202183 G A PDCD11 Missense_Mutation p.V1641M 0.65 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZF-01 10 124813245 124813245 G A ACADSB Silent p.L421L 0.21 TCGA-FJ-A3ZF-01 10 125801927 125801927 T G CHST15 Missense_Mutation p.Y308S 0.56 tolerated(0.07) benign(0.082) TCGA-FJ-A3ZF-01 10 127697960 127697960 G C FANK1 Missense_Mutation p.E331Q 0.25 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-FJ-A3ZF-01 10 15701026 15701026 G A ITGA8 Missense_Mutation p.T307M 0.30 deleterious(0.04) probably_damaging(0.953) TCGA-FJ-A3ZF-01 10 28884845 28884845 C G WAC Missense_Mutation p.S265C 0.26 tolerated_low_confidence(0.08) benign(0.293) TCGA-FJ-A3ZF-01 10 28906604 28906604 G C WAC Missense_Mutation p.E589Q 0.32 deleterious(0) probably_damaging(0.918) TCGA-FJ-A3ZF-01 10 28906611 28906611 A G WAC Missense_Mutation p.H591R 0.36 deleterious(0) probably_damaging(0.918) TCGA-FJ-A3ZF-01 10 52601629 52601629 C T A1CF Missense_Mutation p.E128K 0.27 deleterious(0.03) possibly_damaging(0.81) TCGA-FJ-A3ZF-01 10 61836204 61836204 C T ANK3 Missense_Mutation p.E1479K 0.75 benign(0.277) TCGA-FJ-A3ZF-01 10 64960429 64960429 G A JMJD1C Missense_Mutation p.P1695S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-FJ-A3ZF-01 11 104897665 104897665 C T CASP1 Nonsense_Mutation p.W340* 0.61 TCGA-FJ-A3ZF-01 11 124561605 124561605 C A SPA17 Missense_Mutation p.P80H 0.60 tolerated(0.06) possibly_damaging(0.503) TCGA-FJ-A3ZF-01 11 126135303 126135303 C G SRPR Missense_Mutation p.E391Q 0.59 tolerated(0.09) probably_damaging(0.948) TCGA-FJ-A3ZF-01 11 17113138 17113138 G A PIK3C2A Nonsense_Mutation p.R1570* 0.56 TCGA-FJ-A3ZF-01 11 2154863 2154863 G A IGF2 Missense_Mutation p.R120C 0.22 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZF-01 11 33078731 33078731 G T TCP11L1 Missense_Mutation p.D123Y 0.28 deleterious(0) probably_damaging(0.971) TCGA-FJ-A3ZF-01 11 33369461 33369461 G A HIPK3 Silent p.Q736Q 0.30 TCGA-FJ-A3ZF-01 11 47593318 47593318 C T PTPMT1 3'UTR 0.16 TCGA-FJ-A3ZF-01 11 47653256 47653256 C G MTCH2 Missense_Mutation p.R126P 0.23 deleterious(0.03) possibly_damaging(0.899) TCGA-FJ-A3ZF-01 11 49831400 49831400 T C RP11-707M1.1 RNA 0.19 TCGA-FJ-A3ZF-01 11 65266296 65266296 C G MALAT1 RNA 0.26 TCGA-FJ-A3ZF-01 11 65267925 65267925 C A MALAT1 RNA 0.29 TCGA-FJ-A3ZF-01 11 65268731 65268731 C T MALAT1 RNA 0.29 TCGA-FJ-A3ZF-01 11 65269171 65269171 C T MALAT1 RNA 0.35 TCGA-FJ-A3ZF-01 11 65270535 65270535 G C MALAT1 RNA 0.18 TCGA-FJ-A3ZF-01 11 65271036 65271036 G A MALAT1 RNA 0.40 TCGA-FJ-A3ZF-01 11 65271458 65271458 G C MALAT1 RNA 0.32 TCGA-FJ-A3ZF-01 11 65271701 65271701 G A MALAT1 RNA 0.29 TCGA-FJ-A3ZF-01 11 65272398 65272398 G A MALAT1 RNA 0.21 TCGA-FJ-A3ZF-01 11 65272679 65272679 G A MALAT1 RNA 0.32 TCGA-FJ-A3ZF-01 11 65272832 65272832 G A MALAT1 RNA 0.33 TCGA-FJ-A3ZF-01 11 65360811 65360811 C T KCNK7 Intron 0.35 TCGA-FJ-A3ZF-01 11 6590023 6590023 C G DNHD1 Missense_Mutation p.L4264V 0.53 benign(0.136) TCGA-FJ-A3ZF-01 11 66816302 66816302 C T SYT12 3'UTR 0.55 TCGA-FJ-A3ZF-01 11 67208746 67208746 G A CORO1B Intron 0.30 TCGA-FJ-A3ZF-01 11 7111126 7111126 G A RBMXL2 Missense_Mutation p.D259N 0.31 tolerated(0.11) benign(0.008) TCGA-FJ-A3ZF-01 11 72423574 72423574 C A ARAP1 Missense_Mutation p.V263L 0.62 tolerated(0.19) benign(0.041) TCGA-FJ-A3ZF-01 11 75439964 75439964 C G MOGAT2 Silent p.L260L 0.66 TCGA-FJ-A3ZF-01 11 89184974 89184974 A G NOX4 Silent p.A81A 0.12 TCGA-FJ-A3ZF-01 12 120106160 120106160 G A PRKAB1 Silent p.L37L 0.64 TCGA-FJ-A3ZF-01 12 120214582 120214582 G A CIT Missense_Mutation p.S577L 0.68 tolerated(0.11) benign(0.028) TCGA-FJ-A3ZF-01 12 126138414 126138414 G A TMEM132B Missense_Mutation p.G799S 0.30 tolerated(0.37) benign(0.015) TCGA-FJ-A3ZF-01 12 130923033 130923033 G A RIMBP2 Silent p.T494T 0.56 TCGA-FJ-A3ZF-01 12 20786637 20786637 C A PDE3A Missense_Mutation p.P591T 0.37 deleterious(0.02) benign(0.367) TCGA-FJ-A3ZF-01 12 27068949 27068949 C T ASUN Missense_Mutation p.D412N 0.52 deleterious(0) probably_damaging(0.942) TCGA-FJ-A3ZF-01 12 28116576 28116576 C G PTHLH Missense_Mutation p.E77Q 0.10 tolerated(0.35) probably_damaging(0.989) TCGA-FJ-A3ZF-01 12 31568364 31568364 C T DENND5B Missense_Mutation p.R830K 0.14 tolerated(0.14) possibly_damaging(0.877) TCGA-FJ-A3ZF-01 12 32140179 32140179 G C KIAA1551 Missense_Mutation p.G1670A 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-FJ-A3ZF-01 12 41966494 41966494 G A PDZRN4 Missense_Mutation p.R638Q 0.66 tolerated(0.2) benign(0.004) TCGA-FJ-A3ZF-01 12 49666750 49666750 C A TUBA1C Missense_Mutation p.P364T 0.61 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FJ-A3ZF-01 12 49691240 49691240 G C PRPH Missense_Mutation p.R366P 0.41 deleterious(0) possibly_damaging(0.852) TCGA-FJ-A3ZF-01 12 50344837 50344837 G T AQP2 Missense_Mutation p.C75F 0.19 tolerated(1) benign(0.002) TCGA-FJ-A3ZF-01 12 52713085 52713085 C G KRT83 Missense_Mutation p.E150Q 0.64 tolerated(0.13) benign(0.016) TCGA-FJ-A3ZF-01 12 52758102 52758102 G A KRT85 Silent p.V226V 0.57 TCGA-FJ-A3ZF-01 12 52788848 52788848 C T KRT82 Missense_Mutation p.E485K 0.28 tolerated(0.64) benign(0.013) TCGA-FJ-A3ZF-01 12 54338781 54338781 C T HOXC13 Intron 0.34 TCGA-FJ-A3ZF-01 12 56478854 56478854 G T ERBB3 Missense_Mutation p.V104L 0.56 deleterious(0.03) benign(0.22) TCGA-FJ-A3ZF-01 12 56515127 56515127 C T ZC3H10 Silent p.L261L 0.31 TCGA-FJ-A3ZF-01 12 56818910 56818910 C T TIMELESS Silent p.K535K 0.65 TCGA-FJ-A3ZF-01 12 57864227 57864227 C T GLI1 Silent p.G568G 0.19 TCGA-FJ-A3ZF-01 12 58143281 58143281 G A CDK4 Silent p.L213L 0.25 TCGA-FJ-A3ZF-01 12 64588164 64588164 G A C12orf66 Missense_Mutation p.L266F 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-FJ-A3ZF-01 12 64679744 64679744 C T C12orf56 Missense_Mutation p.D244N 0.38 tolerated(0.08) benign(0.033) TCGA-FJ-A3ZF-01 12 6933056 6933056 G A GPR162 5'UTR 0.20 TCGA-FJ-A3ZF-01 12 98849061 98849061 C T SLC9A7P1 RNA 0.55 TCGA-FJ-A3ZF-01 13 113975875 113975875 C T LAMP1 Missense_Mutation p.P316L 0.64 deleterious(0.03) benign(0.035) TCGA-FJ-A3ZF-01 13 23929191 23929191 C G SACS Missense_Mutation p.K520N 0.36 benign(0.043) TCGA-FJ-A3ZF-01 13 38161956 38161956 T C POSTN Intron 0.22 TCGA-FJ-A3ZF-01 14 20916071 20916071 C A OSGEP Missense_Mutation p.G262V 0.63 deleterious(0) probably_damaging(0.994) TCGA-FJ-A3ZF-01 14 23548812 23548812 C G ACIN1 Missense_Mutation p.E636Q 0.45 benign(0.398) TCGA-FJ-A3ZF-01 14 24631433 24631433 G A IRF9 Missense_Mutation p.G27E 0.45 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 14 33291368 33291368 C T AKAP6 Missense_Mutation p.T1450I 0.50 tolerated_low_confidence(0.05) benign(0.221) TCGA-FJ-A3ZF-01 14 50910669 50910669 T G MAP4K5 Missense_Mutation p.K475N 0.46 deleterious(0.04) possibly_damaging(0.667) TCGA-FJ-A3ZF-01 14 92506013 92506013 C G TRIP11 Missense_Mutation p.G6A 0.31 deleterious(0.04) unknown(0) TCGA-FJ-A3ZF-01 15 101938609 101938609 C T PCSK6 Silent p.K331K 0.27 TCGA-FJ-A3ZF-01 15 23437917 23437917 C A GOLGA8EP RNA 0.65 TCGA-FJ-A3ZF-01 15 25958905 25958905 G A ATP10A Missense_Mutation p.R754W 0.32 deleterious(0) probably_damaging(0.996) TCGA-FJ-A3ZF-01 15 28375401 28375401 A G HERC2 Missense_Mutation p.V4237A 0.29 probably_damaging(0.992) TCGA-FJ-A3ZF-01 15 40939188 40939188 G A CASC5 Missense_Mutation p.E2030K 0.44 deleterious(0) possibly_damaging(0.846) TCGA-FJ-A3ZF-01 15 43815124 43815124 A C MAP1A Missense_Mutation p.K485Q 0.19 probably_damaging(0.999) TCGA-FJ-A3ZF-01 15 43815610 43815610 G A MAP1A Missense_Mutation p.E647K 0.35 probably_damaging(0.997) TCGA-FJ-A3ZF-01 15 43815622 43815622 G A MAP1A Missense_Mutation p.D651N 0.37 probably_damaging(0.999) TCGA-FJ-A3ZF-01 15 43816951 43816951 C T MAP1A Nonsense_Mutation p.Q1094* 0.03 TCGA-FJ-A3ZF-01 15 45408927 45408927 G A DUOXA2 Nonsense_Mutation p.W185* 0.43 TCGA-FJ-A3ZF-01 15 63433729 63433729 G A LACTB Missense_Mutation p.E457K 0.29 deleterious(0.03) benign(0.027) TCGA-FJ-A3ZF-01 15 90617419 90617419 C T ZNF710 Silent p.P574P 0.61 TCGA-FJ-A3ZF-01 15 91428341 91428341 C T FES Silent p.A22A 0.38 TCGA-FJ-A3ZF-01 15 99696485 99696485 C T TTC23 Silent p.L337L 0.60 TCGA-FJ-A3ZF-01 16 11002842 11002842 C G CIITA Intron 0.63 TCGA-FJ-A3ZF-01 16 18856889 18856889 G A SMG1 Silent p.I2027I 0.61 TCGA-FJ-A3ZF-01 16 24803020 24803020 G A TNRC6A Silent p.V1019V 0.10 TCGA-FJ-A3ZF-01 16 29107554 29107554 T C RRN3P2 RNA 0.56 TCGA-FJ-A3ZF-01 16 29821553 29821553 G C MAZ 3'UTR 0.29 TCGA-FJ-A3ZF-01 16 31485480 31485480 C A TGFB1I1 Silent p.I111I 0.57 TCGA-FJ-A3ZF-01 16 32891893 32891893 A C SLC6A10P RNA 0.50 TCGA-FJ-A3ZF-01 16 56436917 56436917 C T AMFR Silent p.V318V 0.41 TCGA-FJ-A3ZF-01 16 61747750 61747750 T C CDH8 Missense_Mutation p.N550S 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-FJ-A3ZF-01 16 70010467 70010467 G T PDXDC2P RNA 0.96 TCGA-FJ-A3ZF-01 16 74372643 74372643 C G RP11-252A24.2 RNA 0.53 TCGA-FJ-A3ZF-01 16 87493735 87493735 G A ZCCHC14 Silent p.I54I 0.05 TCGA-FJ-A3ZF-01 17 17184477 17184477 G T COPS3 Missense_Mutation p.F8L 0.18 tolerated(0.09) possibly_damaging(0.556) TCGA-FJ-A3ZF-01 17 26958634 26958634 G A KIAA0100 Nonsense_Mutation p.Q1388* 0.22 TCGA-FJ-A3ZF-01 17 29161248 29161248 G C ATAD5 Missense_Mutation p.R50T 0.26 tolerated(0.33) benign(0.009) TCGA-FJ-A3ZF-01 17 38024587 38024587 T G ZPBP2 5'UTR 0.35 TCGA-FJ-A3ZF-01 17 38296776 38296776 C T CASC3 5'UTR 0.68 TCGA-FJ-A3ZF-01 17 39280413 39280413 G T KRTAP4-12 5'UTR 0.28 TCGA-FJ-A3ZF-01 17 41957217 41957217 G A MPP2 Missense_Mutation p.T429I 0.31 tolerated(0.08) benign(0.129) TCGA-FJ-A3ZF-01 17 46671051 46671051 G A HOXB5 5'UTR 0.26 TCGA-FJ-A3ZF-01 17 55027348 55027348 G A COIL Nonsense_Mutation p.R419* 0.32 TCGA-FJ-A3ZF-01 17 60813147 60813147 G C MARCH10 Intron 0.27 TCGA-FJ-A3ZF-01 17 67075206 67075206 C G ABCA6 Missense_Mutation p.E1588Q 0.45 deleterious(0.02) possibly_damaging(0.864) TCGA-FJ-A3ZF-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.97 deleterious(0) probably_damaging(0.985) TCGA-FJ-A3ZF-01 17 77922709 77922709 G T TBC1D16 Missense_Mutation p.F501L 0.40 deleterious(0.04) benign(0.367) TCGA-FJ-A3ZF-01 17 78190899 78190899 G A SGSH Missense_Mutation p.R61C 0.25 deleterious(0.01) possibly_damaging(0.849) TCGA-FJ-A3ZF-01 18 19110159 19110159 C T ESCO1 3'UTR 0.20 TCGA-FJ-A3ZF-01 18 23731808 23731808 G C PSMA8 Missense_Mutation p.L78F 0.73 tolerated_low_confidence(0.18) benign(0.001) TCGA-FJ-A3ZF-01 18 33744590 33744590 G A ELP2 Nonsense_Mutation p.W703* 0.47 TCGA-FJ-A3ZF-01 18 51804150 51804150 G C POLI Missense_Mutation p.E162Q 0.44 deleterious(0) possibly_damaging(0.693) TCGA-FJ-A3ZF-01 18 56601746 56601746 C A ZNF532 Missense_Mutation p.P810T 0.39 deleterious(0.02) probably_damaging(0.915) TCGA-FJ-A3ZF-01 18 67614686 67614686 T A CD226 Intron 0.33 TCGA-FJ-A3ZF-01 18 74154543 74154543 G T ZNF516 Missense_Mutation p.S156R 0.50 tolerated(0.17) possibly_damaging(0.467) TCGA-FJ-A3ZF-01 18 77171093 77171093 G T NFATC1 Missense_Mutation p.R260L 0.21 deleterious(0.02) possibly_damaging(0.867) TCGA-FJ-A3ZF-01 18 9553378 9553378 G A PPP4R1 Nonsense_Mutation p.Q745* 0.46 TCGA-FJ-A3ZF-01 19 10405105 10405105 C A ICAM5 Nonsense_Mutation p.C673* 0.64 TCGA-FJ-A3ZF-01 19 11152120 11152120 G C SMARCA4 Missense_Mutation p.E1436D 0.68 benign(0.001) TCGA-FJ-A3ZF-01 19 11597944 11597944 C T ZNF653 Missense_Mutation p.E401K 0.37 tolerated(0.24) benign(0.344) TCGA-FJ-A3ZF-01 19 12154731 12154731 G A ZNF878 Silent p.L495L 0.34 TCGA-FJ-A3ZF-01 19 12223080 12223080 C G ZNF788 Missense_Mutation p.Q240E 0.78 tolerated(0.6) benign(0.002) TCGA-FJ-A3ZF-01 19 12902839 12902839 C T JUNB Missense_Mutation p.S85L 0.15 deleterious(0) benign(0.004) TCGA-FJ-A3ZF-01 19 13015434 13015434 A C SYCE2 Missense_Mutation p.F60V 0.04 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZF-01 19 16790904 16790904 C T TMEM38A Silent p.I78I 0.37 TCGA-FJ-A3ZF-01 19 17487748 17487748 C T PLVAP Missense_Mutation p.R117H 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-FJ-A3ZF-01 19 17611152 17611152 C A SLC27A1 Silent p.V424V 0.18 TCGA-FJ-A3ZF-01 19 17611371 17611371 C G SLC27A1 Silent p.V467V 0.30 TCGA-FJ-A3ZF-01 19 31768032 31768032 C T TSHZ3 Silent p.Q889Q 0.49 TCGA-FJ-A3ZF-01 19 34884660 34884660 C T GPI Missense_Mutation p.S309L 0.45 deleterious_low_confidence(0.03) possibly_damaging(0.523) TCGA-FJ-A3ZF-01 19 36256029 36256029 G A C19orf55 Missense_Mutation p.E241K 0.06 tolerated(0.87) benign(0.03) TCGA-FJ-A3ZF-01 19 38945908 38945908 C T RYR1 Missense_Mutation p.R492C 0.37 probably_damaging(0.998) TCGA-FJ-A3ZF-01 19 40901226 40901226 C T PRX Silent p.G1011G 0.46 TCGA-FJ-A3ZF-01 19 4550226 4550226 C T SEMA6B Missense_Mutation p.D394N 0.56 deleterious(0) benign(0.065) TCGA-FJ-A3ZF-01 19 45996515 45996515 G T RTN2 Silent p.P312P 0.10 TCGA-FJ-A3ZF-01 19 48919324 48919324 C T GRIN2D Silent p.I549I 0.23 TCGA-FJ-A3ZF-01 19 49377076 49377076 G A PPP1R15A Missense_Mutation p.E196K 0.06 tolerated(0.37) possibly_damaging(0.899) TCGA-FJ-A3ZF-01 19 49527389 49527389 G A CGB 5'UTR 0.14 TCGA-FJ-A3ZF-01 19 49564969 49564969 C T NTF4 Missense_Mutation p.V96M 0.53 tolerated(0.09) possibly_damaging(0.645) TCGA-FJ-A3ZF-01 19 49643309 49643309 C T PPFIA3 Nonsense_Mutation p.R778* 0.37 TCGA-FJ-A3ZF-01 19 50473700 50473700 C T SIGLEC16 RNA 0.47 TCGA-FJ-A3ZF-01 19 50905324 50905324 G T POLD1 Missense_Mutation p.G178W 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-FJ-A3ZF-01 19 50918133 50918133 G A POLD1 Missense_Mutation p.R817Q 0.46 deleterious(0.02) benign(0.025) TCGA-FJ-A3ZF-01 19 51330209 51330209 C T KLK15 Missense_Mutation p.E136K 0.13 tolerated(0.06) possibly_damaging(0.566) TCGA-FJ-A3ZF-01 19 51330397 51330397 C T KLK15 Missense_Mutation p.G73E 0.14 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 19 52519431 52519431 C T ZNF614 Missense_Mutation p.E474K 0.08 deleterious(0.01) possibly_damaging(0.73) TCGA-FJ-A3ZF-01 19 53958557 53958557 G A ZNF761 RNA 0.39 TCGA-FJ-A3ZF-01 19 56538965 56538965 C T NLRP5 Missense_Mutation p.R456C 0.40 tolerated(0.12) benign(0.003) TCGA-FJ-A3ZF-01 19 9578205 9578205 G A ZNF560 Missense_Mutation p.S473L 0.20 deleterious(0.03) benign(0.307) TCGA-FJ-A3ZF-01 1 10364096 10364096 C G KIF1B Intron 0.62 TCGA-FJ-A3ZF-01 1 114380326 114380326 G A PTPN22 Silent p.L566L 0.63 TCGA-FJ-A3ZF-01 1 1168307 1168307 G T B3GALT6 Missense_Mutation p.G217C 0.33 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 1 120056930 120056930 C T HSD3B1 Missense_Mutation p.H262Y 0.68 tolerated(0.06) benign(0.16) TCGA-FJ-A3ZF-01 1 1233212 1233212 C G ACAP3 Missense_Mutation p.C373S 0.63 tolerated(0.41) benign(0.002) TCGA-FJ-A3ZF-01 1 1479272 1479272 G A SSU72 Missense_Mutation p.L154F 0.26 tolerated(0.1) benign(0.135) TCGA-FJ-A3ZF-01 1 150479406 150479406 G A TARS2 Missense_Mutation p.E675K 0.13 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 1 150479442 150479442 G A TARS2 Missense_Mutation p.D687N 0.15 deleterious(0.01) possibly_damaging(0.861) TCGA-FJ-A3ZF-01 1 154951211 154951211 C T CKS1B Silent p.I66I 0.93 TCGA-FJ-A3ZF-01 1 154995910 154995910 G A DCST2 Missense_Mutation p.R632C 0.25 deleterious(0) possibly_damaging(0.724) TCGA-FJ-A3ZF-01 1 154998788 154998788 G A DCST2 Missense_Mutation p.S534F 0.18 tolerated(0.07) benign(0.119) TCGA-FJ-A3ZF-01 1 157803224 157803224 C G CD5L Missense_Mutation p.G266A 0.25 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZF-01 1 160094202 160094202 C G ATP1A2 Missense_Mutation p.I204M 0.17 deleterious(0.02) benign(0.445) TCGA-FJ-A3ZF-01 1 179352577 179352577 G C AXDND1 Missense_Mutation p.M213I 0.05 deleterious(0.02) benign(0.322) TCGA-FJ-A3ZF-01 1 180804041 180804041 T G XPR1 Missense_Mutation p.V389G 0.14 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 1 186270750 186270750 G A PRG4 Missense_Mutation p.E76K 1.00 probably_damaging(0.998) TCGA-FJ-A3ZF-01 1 186270756 186270756 T A PRG4 Missense_Mutation p.F78I 1.00 probably_damaging(0.999) TCGA-FJ-A3ZF-01 1 196250089 196250089 G A KCNT2 Silent p.I937I 0.98 TCGA-FJ-A3ZF-01 1 201984345 201984345 A G ELF3 Missense_Mutation p.Y337C 0.98 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 1 206225298 206225298 C T AVPR1B Silent p.I286I 0.58 TCGA-FJ-A3ZF-01 1 20972086 20972086 G A PINK1 Silent p.V331V 0.30 TCGA-FJ-A3ZF-01 1 233134081 233134081 C G PCNXL2 Missense_Mutation p.G1903R 0.34 tolerated(0.55) benign(0.058) TCGA-FJ-A3ZF-01 1 248059897 248059897 C A OR2W3 3'UTR 0.53 TCGA-FJ-A3ZF-01 1 248525926 248525926 G A OR2T4 Silent p.E348E 0.96 TCGA-FJ-A3ZF-01 1 2529730 2529730 C T MMEL1 Silent p.Q396Q 0.25 TCGA-FJ-A3ZF-01 1 2530149 2530149 G C MMEL1 Silent p.V374V 0.21 TCGA-FJ-A3ZF-01 1 27106421 27106421 T G ARID1A Missense_Mutation p.L2011R 0.32 probably_damaging(0.998) TCGA-FJ-A3ZF-01 1 27683085 27683085 C G MAP3K6 Missense_Mutation p.D1174H 0.13 tolerated(0.11) possibly_damaging(0.607) TCGA-FJ-A3ZF-01 1 33236326 33236326 G C KIAA1522 Missense_Mutation p.D516H 0.27 tolerated(0.05) unknown(0) TCGA-FJ-A3ZF-01 1 47753284 47753284 C T STIL Missense_Mutation p.E358K 0.47 tolerated(0.05) benign(0.059) TCGA-FJ-A3ZF-01 1 53699227 53699227 C T MAGOH Missense_Mutation p.R82Q 0.51 deleterious(0.04) benign(0.011) TCGA-FJ-A3ZF-01 1 6257784 6257785 - T RPL22 Frame_Shift_Ins p.K16Efs*9 0.65 TCGA-FJ-A3ZF-01 20 13251266 13251266 G T ISM1 Missense_Mutation p.R85L 0.05 tolerated(0.2) benign(0.06) TCGA-FJ-A3ZF-01 20 16359942 16359942 A C KIF16B Missense_Mutation p.L902R 0.54 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-FJ-A3ZF-01 20 18142726 18142726 G C CSRP2BP Missense_Mutation p.L315F 0.31 tolerated(0.26) possibly_damaging(0.793) TCGA-FJ-A3ZF-01 20 33067581 33067581 G A ITCH Missense_Mutation p.R643K 0.56 deleterious(0.02) probably_damaging(0.975) TCGA-FJ-A3ZF-01 20 34292504 34292504 C G RBM39 Splice_Site p.X498_splice 0.40 TCGA-FJ-A3ZF-01 20 48808576 48808576 G T CEBPB Nonsense_Mutation p.E336* 0.43 TCGA-FJ-A3ZF-01 20 52199284 52199284 G C ZNF217 Missense_Mutation p.L28V 0.43 tolerated(0.62) benign(0.078) TCGA-FJ-A3ZF-01 20 55101119 55101119 C G FAM209A Missense_Mutation p.S170C 0.34 deleterious(0.02) benign(0.002) TCGA-FJ-A3ZF-01 21 10942758 10942758 C T TPTE Missense_Mutation p.R228K 0.15 deleterious(0.01) probably_damaging(0.965) TCGA-FJ-A3ZF-01 21 10996055 10996055 C T TPTE RNA 0.17 TCGA-FJ-A3ZF-01 21 31588248 31588248 C T CLDN8 5'UTR 0.62 TCGA-FJ-A3ZF-01 21 43867194 43867194 G T UBASH3A Nonsense_Mutation p.E626* 0.28 TCGA-FJ-A3ZF-01 21 43867466 43867466 C T UBASH3A 3'UTR 0.38 TCGA-FJ-A3ZF-01 21 47865250 47865250 C T PCNT 3'UTR 0.18 TCGA-FJ-A3ZF-01 22 22892514 22892514 A G PRAME Missense_Mutation p.I196T 0.41 deleterious(0) benign(0.022) TCGA-FJ-A3ZF-01 22 41553350 41553350 G T EP300 Nonsense_Mutation p.E1147* 0.47 TCGA-FJ-A3ZF-01 2 101869621 101869621 G A CNOT11 Silent p.P65P 0.21 TCGA-FJ-A3ZF-01 2 103063657 103063657 G C IL18RAP Missense_Mutation p.Q400H 0.54 deleterious(0) benign(0.003) TCGA-FJ-A3ZF-01 2 107041332 107041332 C G RGPD3 Missense_Mutation p.E1031Q 0.35 deleterious(0.01) possibly_damaging(0.744) TCGA-FJ-A3ZF-01 2 11338883 11338883 C T ROCK2 Silent p.R976R 0.27 TCGA-FJ-A3ZF-01 2 125192129 125192129 A T CNTNAP5 Missense_Mutation p.T200S 0.21 tolerated(0.37) benign(0.057) TCGA-FJ-A3ZF-01 2 133174603 133174603 G T GPR39 5'UTR 0.59 TCGA-FJ-A3ZF-01 2 152468823 152468823 C G NEB Missense_Mutation p.K3894N 0.62 probably_damaging(0.99) TCGA-FJ-A3ZF-01 2 157182439 157182439 G A NR4A2 Silent p.H538H 0.32 TCGA-FJ-A3ZF-01 2 158406900 158406900 T C ACVR1C Silent p.L183L 0.64 TCGA-FJ-A3ZF-01 2 162088031 162088031 C A TANK Missense_Mutation p.S357Y 0.45 deleterious(0.02) benign(0.021) TCGA-FJ-A3ZF-01 2 163256815 163256815 G T KCNH7 Missense_Mutation p.T764N 0.55 deleterious(0) probably_damaging(0.991) TCGA-FJ-A3ZF-01 2 166850696 166850696 C T SCN1A Nonsense_Mutation p.W1604* 0.27 TCGA-FJ-A3ZF-01 2 170063662 170063662 C G LRP2 Missense_Mutation p.D2190H 0.52 probably_damaging(1) TCGA-FJ-A3ZF-01 2 171259362 171259362 G T MYO3B Missense_Mutation p.A712S 0.17 tolerated(0.78) benign(0.008) TCGA-FJ-A3ZF-01 2 177016346 177016346 C T HOXD3 5'UTR 0.45 TCGA-FJ-A3ZF-01 2 179343041 179343041 G T FKBP7 Silent p.G62G 0.23 TCGA-FJ-A3ZF-01 2 179343285 179343285 C G FKBP7 5'UTR 0.23 TCGA-FJ-A3ZF-01 2 179617850 179617850 C A TTN Splice_Site p.X3771_splice 0.29 TCGA-FJ-A3ZF-01 2 203420682 203420682 C T BMPR2 Missense_Mutation p.S765L 0.22 tolerated(0.15) benign(0.114) TCGA-FJ-A3ZF-01 2 20647365 20647365 G A RHOB Missense_Mutation p.E47K 0.20 tolerated(0.06) possibly_damaging(0.514) TCGA-FJ-A3ZF-01 2 207172029 207172029 C T ZDBF2 Missense_Mutation p.S926L 0.32 deleterious(0.05) possibly_damaging(0.693) TCGA-FJ-A3ZF-01 2 212285209 212285209 G A ERBB4 Missense_Mutation p.P1031L 0.05 deleterious(0.05) benign(0.062) TCGA-FJ-A3ZF-01 2 220089301 220089301 G C ATG9A Silent p.L264L 0.28 TCGA-FJ-A3ZF-01 2 220251131 220251131 C T DNPEP Silent p.V112V 0.22 TCGA-FJ-A3ZF-01 2 230377518 230377518 G A DNER Silent p.F376F 0.54 TCGA-FJ-A3ZF-01 2 27825413 27825413 C G ZNF512 Silent p.L251L 0.12 TCGA-FJ-A3ZF-01 2 46815287 46815287 C G PIGF Intron 0.18 TCGA-FJ-A3ZF-01 2 48874166 48874166 A G STON1-GTF2A1L Missense_Mutation p.I1025M 0.32 tolerated(0.16) benign(0.228) TCGA-FJ-A3ZF-01 2 50733754 50733754 G T NRXN1 Missense_Mutation p.S832R 0.09 deleterious(0.04) benign(0.049) TCGA-FJ-A3ZF-01 2 56144828 56144828 G C EFEMP1 Nonsense_Mutation p.Y163* 0.20 TCGA-FJ-A3ZF-01 2 62067209 62067209 C T FAM161A Silent p.L310L 0.19 TCGA-FJ-A3ZF-01 2 74074811 74074811 G T STAMBP Missense_Mutation p.V225L 0.13 tolerated(0.73) benign(0.001) TCGA-FJ-A3ZF-01 3 100962599 100962599 T C IMPG2 Missense_Mutation p.N859S 0.35 tolerated(0.24) benign(0.006) TCGA-FJ-A3ZF-01 3 107435578 107435578 C T BBX Missense_Mutation p.S96F 0.62 deleterious(0) possibly_damaging(0.741) TCGA-FJ-A3ZF-01 3 111664202 111664202 G C PHLDB2 Missense_Mutation p.E829Q 0.56 deleterious(0) probably_damaging(0.968) TCGA-FJ-A3ZF-01 3 112710056 112710056 C T GTPBP8 Silent p.I70I 0.32 TCGA-FJ-A3ZF-01 3 119344030 119344030 G A PLA1A Missense_Mutation p.E358K 0.65 tolerated(0.15) benign(0.006) TCGA-FJ-A3ZF-01 3 119456222 119456222 G C MAATS1 Missense_Mutation p.D452H 0.23 deleterious(0.01) possibly_damaging(0.642) TCGA-FJ-A3ZF-01 3 119456227 119456227 G A MAATS1 Silent p.K453K 0.22 TCGA-FJ-A3ZF-01 3 12447409 12447409 C A PPARG Silent p.A216A 0.15 TCGA-FJ-A3ZF-01 3 13660497 13660497 C T FBLN2 Missense_Mutation p.P678L 0.23 tolerated(0.1) possibly_damaging(0.814) TCGA-FJ-A3ZF-01 3 146159566 146159566 G T PLSCR2 3'UTR 0.49 TCGA-FJ-A3ZF-01 3 158983102 158983102 C T IQCJ Silent p.L130L 0.55 TCGA-FJ-A3ZF-01 3 190366273 190366273 G C IL1RAP Intron 0.30 TCGA-FJ-A3ZF-01 3 196753550 196753550 C T MFI2 Silent p.V95V 0.17 TCGA-FJ-A3ZF-01 3 21552450 21552450 C T ZNF385D Missense_Mutation p.M114I 0.48 tolerated(0.37) benign(0.004) TCGA-FJ-A3ZF-01 3 38401846 38401846 C G XYLB Missense_Mutation p.H53D 0.48 deleterious(0.01) benign(0.335) TCGA-FJ-A3ZF-01 3 42954704 42954704 C G ZNF662 Intron 0.21 TCGA-FJ-A3ZF-01 3 46415295 46415295 G A CCR5 Missense_Mutation p.G301E 0.50 deleterious(0) probably_damaging(0.984) TCGA-FJ-A3ZF-01 3 47040469 47040469 G A NBEAL2 Silent p.L1135L 0.21 TCGA-FJ-A3ZF-01 3 49692495 49692495 G T BSN Nonsense_Mutation p.E1836* 0.22 TCGA-FJ-A3ZF-01 3 51264853 51264853 G A DOCK3 Missense_Mutation p.R506H 0.44 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 3 51673632 51673632 C T RAD54L2 Silent p.G686G 0.18 TCGA-FJ-A3ZF-01 3 58095302 58095302 G A FLNB Splice_Site p.X734_splice 0.45 TCGA-FJ-A3ZF-01 3 77637928 77637928 G C ROBO2 Missense_Mutation p.E859Q 0.43 tolerated(0.1) benign(0.403) TCGA-FJ-A3ZF-01 3 9862298 9862298 C G TTLL3 Missense_Mutation p.L343V 0.24 deleterious(0.02) probably_damaging(0.918) TCGA-FJ-A3ZF-01 4 104044225 104044225 C G CENPE Missense_Mutation p.E2316Q 0.51 possibly_damaging(0.728) TCGA-FJ-A3ZF-01 4 120517758 120517758 A C PDE5A Missense_Mutation p.F251V 0.32 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 4 146058794 146058794 G A OTUD4 Nonsense_Mutation p.Q980* 0.36 TCGA-FJ-A3ZF-01 4 159627494 159627494 G A ETFDH Missense_Mutation p.G480E 0.41 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 4 175749928 175749928 G A GLRA3 Missense_Mutation p.S12L 0.40 tolerated_low_confidence(0.24) benign(0.001) TCGA-FJ-A3ZF-01 4 1803738 1803738 G A FGFR3 Missense_Mutation p.V306I 0.31 tolerated(0.06) benign(0.427) TCGA-FJ-A3ZF-01 4 436965 436965 T C ZNF721 Missense_Mutation p.N431D 0.11 tolerated(0.5) benign(0.004) TCGA-FJ-A3ZF-01 4 46252292 46252292 G T GABRA2 3'UTR 0.12 TCGA-FJ-A3ZF-01 4 47538788 47538788 A G ATP10D Missense_Mutation p.Y410C 0.47 deleterious(0.01) probably_damaging(1) TCGA-FJ-A3ZF-01 4 47574247 47574247 G A ATP10D Silent p.Q1080Q 0.47 TCGA-FJ-A3ZF-01 4 54968033 54968033 G A GSX2 Missense_Mutation p.E287K 0.57 deleterious(0) possibly_damaging(0.874) TCGA-FJ-A3ZF-01 4 57777573 57777573 A G REST Missense_Mutation p.T257A 0.53 tolerated(0.18) probably_damaging(0.978) TCGA-FJ-A3ZF-01 4 62800707 62800707 G A LPHN3 Silent p.K686K 0.38 TCGA-FJ-A3ZF-01 4 66356360 66356360 C A EPHA5 Silent p.P379P 0.16 TCGA-FJ-A3ZF-01 4 76721825 76721825 G C USO1 Missense_Mutation p.E588D 0.59 tolerated(0.73) benign(0.043) TCGA-FJ-A3ZF-01 4 77817830 77817830 G T SOWAHB Silent p.L391L 0.21 TCGA-FJ-A3ZF-01 4 88533799 88533799 C G DSPP Missense_Mutation p.T154S 0.40 benign(0.059) TCGA-FJ-A3ZF-01 5 139889343 139889343 T C ANKHD1 Missense_Mutation p.L1296S 0.50 possibly_damaging(0.849) TCGA-FJ-A3ZF-01 5 140481673 140481673 A G PCDHB3 Silent p.S480S 0.40 TCGA-FJ-A3ZF-01 5 140516673 140516673 G A PCDHB5 Missense_Mutation p.A553T 0.28 tolerated_low_confidence(0.21) benign(0.028) TCGA-FJ-A3ZF-01 5 141309811 141309811 C T KIAA0141 Silent p.L242L 0.32 TCGA-FJ-A3ZF-01 5 148207103 148207103 G C ADRB2 Missense_Mutation p.E237Q 0.06 deleterious(0.05) probably_damaging(0.969) TCGA-FJ-A3ZF-01 5 161580368 161580368 C A GABRG2 Nonsense_Mutation p.Y514* 0.38 TCGA-FJ-A3ZF-01 5 178050303 178050303 C T CLK4 Missense_Mutation p.E39K 0.50 deleterious_low_confidence(0.04) benign(0.345) TCGA-FJ-A3ZF-01 5 37183592 37183592 C G C5orf42 Missense_Mutation p.R1564T 0.27 deleterious(0) probably_damaging(0.928) TCGA-FJ-A3ZF-01 5 53815261 53815261 C T SNX18 Silent p.I493I 0.37 TCGA-FJ-A3ZF-01 5 64629868 64629868 C A ADAMTS6 Splice_Site p.X373_splice 0.32 TCGA-FJ-A3ZF-01 5 64954221 64954221 G C TRAPPC13 Missense_Mutation p.Q197H 0.58 deleterious(0) possibly_damaging(0.901) TCGA-FJ-A3ZF-01 5 72192882 72192882 G C TNPO1 Splice_Site p.X748_splice 0.50 TCGA-FJ-A3ZF-01 5 90055402 90055402 G A GPR98 Silent p.K4039K 0.33 TCGA-FJ-A3ZF-01 6 107040127 107040127 C A RTN4IP1 Missense_Mutation p.A240S 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-FJ-A3ZF-01 6 117683989 117683989 G C ROS1 Missense_Mutation p.P1053R 0.18 tolerated(0.92) benign(0.235) TCGA-FJ-A3ZF-01 6 127796661 127796661 C G SOGA3 Missense_Mutation p.S837T 0.26 deleterious(0.02) benign(0.032) TCGA-FJ-A3ZF-01 6 130535635 130535635 T C SAMD3 Missense_Mutation p.N39S 0.52 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-FJ-A3ZF-01 6 146207790 146207790 T G SHPRH 3'UTR 0.67 TCGA-FJ-A3ZF-01 6 1624454 1624454 C T GMDS Missense_Mutation p.E357K 0.53 deleterious_low_confidence(0.05) benign(0.168) TCGA-FJ-A3ZF-01 6 169064760 169064760 G A SMOC2 Missense_Mutation p.R442K 0.12 tolerated_low_confidence(0.49) benign(0.002) TCGA-FJ-A3ZF-01 6 26273579 26273579 A T HIST1H2BI Nonsense_Mutation p.K126* 0.46 TCGA-FJ-A3ZF-01 6 31583013 31583013 G T AIF1 5'UTR 0.40 TCGA-FJ-A3ZF-01 6 31675751 31675751 G A LY6G6F Silent p.G162G 0.40 TCGA-FJ-A3ZF-01 6 32809989 32809989 C A PSMB8 Missense_Mutation p.K153N 0.49 deleterious(0) probably_damaging(0.998) TCGA-FJ-A3ZF-01 6 33424237 33424237 C G ZBTB9 Missense_Mutation p.L454V 0.56 deleterious(0.02) probably_damaging(0.96) TCGA-FJ-A3ZF-01 6 39847178 39847178 C T DAAM2 Silent p.D590D 0.45 TCGA-FJ-A3ZF-01 6 40400554 40400557 TCGA - LRFN2 Frame_Shift_Del p.L99Rfs*32 0.31 TCGA-FJ-A3ZF-01 6 42858212 42858212 C T C6orf226 3'UTR 0.47 TCGA-FJ-A3ZF-01 6 42930028 42930028 A G GNMT Silent p.A95A 0.35 TCGA-FJ-A3ZF-01 6 51887631 51887631 G A PKHD1 Missense_Mutation p.S1783F 0.49 deleterious(0) probably_damaging(0.943) TCGA-FJ-A3ZF-01 6 73951907 73951907 G A KHDC1 Nonsense_Mutation p.Q129* 0.15 TCGA-FJ-A3ZF-01 6 90642597 90642597 C G BACH2 Missense_Mutation p.E686Q 0.56 tolerated(0.16) probably_damaging(0.997) TCGA-FJ-A3ZF-01 7 116960744 116960744 G A WNT2 Missense_Mutation p.R63C 0.85 tolerated(0.07) possibly_damaging(0.828) TCGA-FJ-A3ZF-01 7 128415628 128415628 G C OPN1SW Missense_Mutation p.L73V 0.81 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZF-01 7 128481267 128481267 C A FLNC Missense_Mutation p.D619E 0.07 tolerated(0.41) possibly_damaging(0.522) TCGA-FJ-A3ZF-01 7 148288208 148288208 C A C7orf33 Missense_Mutation p.T64K 0.78 deleterious_low_confidence(0.02) possibly_damaging(0.742) TCGA-FJ-A3ZF-01 7 1524940 1524940 G C INTS1 Missense_Mutation p.L1048V 0.12 tolerated(0.36) benign(0.002) TCGA-FJ-A3ZF-01 7 23004031 23004040 TACAAGGCAA - FAM126A Splice_Site p.X246_splice 0.44 TCGA-FJ-A3ZF-01 7 43484767 43484767 G A HECW1 Missense_Mutation p.G666R 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.716) TCGA-FJ-A3ZF-01 7 83035312 83035312 C T SEMA3E Missense_Mutation p.V293I 0.44 tolerated(0.4) benign(0.028) TCGA-FJ-A3ZF-01 7 8791209 8791209 T C NXPH1 Missense_Mutation p.L209P 0.12 tolerated(0.2) possibly_damaging(0.462) TCGA-FJ-A3ZF-01 7 88963539 88963539 G C ZNF804B Missense_Mutation p.D415H 0.09 tolerated(0.09) benign(0.035) TCGA-FJ-A3ZF-01 7 99758558 99758560 TGT - GAL3ST4 In_Frame_Del p.D151_S152delinsG 0.42 TCGA-FJ-A3ZF-01 8 100443874 100443874 G A VPS13B Silent p.V1064V 0.23 TCGA-FJ-A3ZF-01 8 110457235 110457235 G A PKHD1L1 Missense_Mutation p.E1713K 0.03 tolerated(0.25) possibly_damaging(0.464) TCGA-FJ-A3ZF-01 8 114327003 114327003 A T CSMD3 Silent p.G66G 0.32 TCGA-FJ-A3ZF-01 8 120575094 120575094 C T ENPP2 Intron 0.28 TCGA-FJ-A3ZF-01 8 127569335 127569335 G C FAM84B Silent p.G100G 0.68 TCGA-FJ-A3ZF-01 8 144992886 144992886 C G PLEC Missense_Mutation p.R3838S 0.20 benign(0.18) TCGA-FJ-A3ZF-01 8 145731256 145731256 C T GPT Silent p.I255I 0.25 TCGA-FJ-A3ZF-01 8 15978045 15978045 G T MSR1 Missense_Mutation p.S368R 0.82 tolerated(0.21) benign(0.078) TCGA-FJ-A3ZF-01 8 36693884 36693884 G A KCNU1 Splice_Site p.X455_splice 0.12 TCGA-FJ-A3ZF-01 8 77763532 77763532 C T ZFHX4 Silent p.L1459L 0.25 TCGA-FJ-A3ZF-01 9 101536318 101536318 C T ANKS6 Silent p.L554L 0.28 TCGA-FJ-A3ZF-01 9 1056399 1056399 C G DMRT2 Missense_Mutation p.P271R 0.12 deleterious(0) probably_damaging(0.999) TCGA-FJ-A3ZF-01 9 127113225 127113225 G A NEK6 Silent p.%3D 0.38 TCGA-FJ-A3ZF-01 9 137328351 137328351 C A RXRA Missense_Mutation p.S427Y 0.60 deleterious(0) probably_damaging(1) TCGA-FJ-A3ZF-01 9 137704337 137704337 G A COL5A1 Missense_Mutation p.V1245M 0.57 unknown(0) TCGA-FJ-A3ZF-01 9 2104016 2104016 C T SMARCA2 Missense_Mutation p.R1047W 0.55 possibly_damaging(0.689) TCGA-FJ-A3ZF-01 9 32634258 32634258 G C TAF1L Missense_Mutation p.I440M 0.59 deleterious(0.02) benign(0.158) TCGA-FJ-A3ZF-01 9 7798477 7798477 C T TMEM261 3'UTR 0.34 TCGA-FJ-A3ZF-01 X 106038818 106038818 C G RNF128 Missense_Mutation p.L388V 0.45 tolerated(0.11) benign(0.253) TCGA-FJ-A3ZF-01 X 135761777 135761777 G A ARHGEF6 Missense_Mutation p.P583S 0.05 deleterious(0.03) probably_damaging(0.931) TCGA-FJ-A3ZF-01 X 14932633 14932633 A C MOSPD2 Missense_Mutation p.E334A 0.94 deleterious(0.01) probably_damaging(0.938) TCGA-FJ-A3ZF-01 X 152959662 152959662 G T SLC6A8 Missense_Mutation p.E444D 0.95 deleterious(0.01) probably_damaging(0.989) TCGA-FJ-A3ZF-01 X 153236183 153236183 G A HCFC1 Missense_Mutation p.R37C 0.79 deleterious(0.01) probably_damaging(0.997) TCGA-FJ-A3ZF-01 X 153944442 153944442 C G GAB3 Missense_Mutation p.E79Q 0.59 tolerated(0.1) probably_damaging(0.986) TCGA-FJ-A3ZF-01 X 2209621 2209621 C T DHRSX Missense_Mutation p.A104T 0.55 tolerated(0.14) possibly_damaging(0.491) TCGA-FJ-A3ZF-01 X 53106223 53106223 C T GPR173 Silent p.C140C 0.36 TCGA-FJ-A3ZF-01 X 7175544 7175544 C T STS Silent p.F104F 0.05 TCGA-FJ-A3ZF-01 Y 21878276 21878276 C G KDM5D Missense_Mutation p.K640N 0.92 tolerated(0.17) probably_damaging(0.918) TCGA-FJ-A871-01 10 124097619 124097619 A G BTBD16 3'UTR 0.43 TCGA-FJ-A871-01 10 17152969 17152969 C T CUBN Missense_Mutation p.V322I 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FJ-A871-01 10 89692794 89692794 A G PTEN Missense_Mutation p.H93R 0.34 deleterious(0.03) probably_damaging(0.92) TCGA-FJ-A871-01 10 89725043 89725043 G A PTEN Splice_Site p.X343_splice 0.42 TCGA-FJ-A871-01 11 116729212 116729212 T C SIK3 Missense_Mutation p.Y884C 0.41 tolerated_low_confidence(0.11) probably_damaging(0.927) TCGA-FJ-A871-01 11 56128260 56128260 G C OR8J1 Missense_Mutation p.D180H 0.41 deleterious(0) probably_damaging(1) TCGA-FJ-A871-01 11 60901657 60901657 C A VPS37C Missense_Mutation p.R39L 0.35 deleterious(0) probably_damaging(0.993) TCGA-FJ-A871-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.72 deleterious(0.03) benign(0.376) TCGA-FJ-A871-01 13 45149899 45149899 T G TSC22D1 Missense_Mutation p.Q104H 0.38 deleterious(0) probably_damaging(0.993) TCGA-FJ-A871-01 14 39502528 39502528 G C SEC23A Missense_Mutation p.S738C 0.38 deleterious(0.01) possibly_damaging(0.637) TCGA-FJ-A871-01 14 60194186 60194186 C T RTN1 Missense_Mutation p.A406T 0.64 tolerated(0.05) possibly_damaging(0.68) TCGA-FJ-A871-01 14 74976495 74976495 G A LTBP2 Silent p.F1073F 0.37 TCGA-FJ-A871-01 14 76118232 76118232 C G C14orf1 Silent p.T75T 0.34 TCGA-FJ-A871-01 15 63880542 63880547 GAGACA - USP3 In_Frame_Del p.T380_E381del 0.34 TCGA-FJ-A871-01 15 86697784 86697784 C T AGBL1 Missense_Mutation p.A83V 0.35 deleterious(0.03) probably_damaging(0.958) TCGA-FJ-A871-01 16 21073885 21073885 T C DNAH3 Missense_Mutation p.D1213G 0.05 deleterious(0.03) benign(0.155) TCGA-FJ-A871-01 16 21210936 21210936 G C ZP2 Missense_Mutation p.P628A 0.30 tolerated(0.08) benign(0.192) TCGA-FJ-A871-01 16 3077426 3077426 G A THOC6 Silent p.K290K 0.28 TCGA-FJ-A871-01 16 3779715 3779715 G T CREBBP Nonsense_Mutation p.S1778* 0.35 TCGA-FJ-A871-01 17 10436850 10436850 G A MYH2 Silent p.T760T 0.33 TCGA-FJ-A871-01 17 18023385 18023385 C T MYO15A Missense_Mutation p.P424L 0.34 possibly_damaging(0.726) TCGA-FJ-A871-01 17 39412168 39412168 C G KRTAP9-9 3'UTR 0.31 TCGA-FJ-A871-01 17 42476701 42476701 T C GPATCH8 Missense_Mutation p.D915G 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-FJ-A871-01 18 333006 333006 C T COLEC12 Splice_Site p.X651_splice 0.31 TCGA-FJ-A871-01 18 72913822 72913822 G A ZADH2 Missense_Mutation p.P228L 0.37 deleterious(0.02) benign(0.042) TCGA-FJ-A871-01 19 40872760 40872760 A G PLD3 Silent p.E61E 0.37 TCGA-FJ-A871-01 19 48260380 48260380 C T GLTSCR2 3'Flank 0.47 TCGA-FJ-A871-01 1 102270333 102270333 C T OLFM3 Missense_Mutation p.G280S 0.36 deleterious(0) probably_damaging(1) TCGA-FJ-A871-01 1 237802371 237802371 G A RYR2 Missense_Mutation p.E2329K 0.40 probably_damaging(0.955) TCGA-FJ-A871-01 1 27107136 27107137 AG - ARID1A Frame_Shift_Del p.E2250Vfs*27 0.51 TCGA-FJ-A871-01 1 70339393 70339393 C T LRRC7 Intron 0.50 TCGA-FJ-A871-01 1 75038414 75038414 A G C1orf173 Silent p.L994L 0.35 TCGA-FJ-A871-01 20 2442377 2442377 G A SNRPB 3'UTR 0.39 TCGA-FJ-A871-01 20 50408575 50408575 C T SALL4 Silent p.A149A 0.35 TCGA-FJ-A871-01 20 60890219 60890219 C T LAMA5 Missense_Mutation p.E2638K 0.48 possibly_damaging(0.498) TCGA-FJ-A871-01 21 19687564 19687564 T C TMPRSS15 Missense_Mutation p.K644R 0.36 tolerated(0.22) benign(0.015) TCGA-FJ-A871-01 2 198281577 198281577 T C SF3B1 Missense_Mutation p.N185S 0.38 tolerated(0.4) benign(0.001) TCGA-FJ-A871-01 2 219028978 219028978 G A CXCR1 Silent p.I319I 0.46 TCGA-FJ-A871-01 2 228855879 228855879 G A SPHKAP Missense_Mutation p.T1599M 0.35 tolerated(0.11) benign(0.003) TCGA-FJ-A871-01 2 61258969 61258969 C T PEX13 Nonsense_Mutation p.R170* 0.38 TCGA-FJ-A871-01 3 41266101 41266101 C T CTNNB1 Missense_Mutation p.S33F 0.38 deleterious(0) probably_damaging(0.949) TCGA-FJ-A871-01 3 53922428 53922428 C A SELK Silent p.V34V 0.25 TCGA-FJ-A871-01 3 74347162 74347162 T G CNTN3 Missense_Mutation p.N783H 0.38 deleterious(0.04) benign(0.186) TCGA-FJ-A871-01 4 170913393 170913393 T C MFAP3L Silent p.K122K 0.43 TCGA-FJ-A871-01 4 184114758 184114758 G A WWC2 Silent p.T46T 0.43 TCGA-FJ-A871-01 5 11732352 11732352 C T CTNND2 Missense_Mutation p.A24T 0.44 tolerated(0.92) benign(0.001) TCGA-FJ-A871-01 5 140431523 140431523 C T PCDHB1 Silent p.S156S 0.33 TCGA-FJ-A871-01 5 140482030 140482030 C T PCDHB3 Silent p.N599N 0.38 TCGA-FJ-A871-01 5 140744084 140744084 G A PCDHGA5 Missense_Mutation p.G63R 0.35 tolerated_low_confidence(0.1) possibly_damaging(0.665) TCGA-FJ-A871-01 5 37045603 37045606 AACA - NIPBL Frame_Shift_Del p.K2137Qfs*32 0.33 TCGA-FJ-A871-01 6 27806399 27806399 C - HIST1H2BN 5'Flank 0.20 TCGA-FJ-A871-01 6 29408453 29408453 C T OR10C1 Missense_Mutation p.L221F 0.38 deleterious(0.02) benign(0.42) TCGA-FJ-A871-01 6 31842240 31842240 G A SLC44A4 Missense_Mutation p.P176S 0.33 tolerated(0.13) benign(0.096) TCGA-FJ-A871-01 6 33144778 33144778 G A COL11A2 Silent p.D601D 0.43 TCGA-FJ-A871-01 6 44197522 44197522 A G SLC29A1 Missense_Mutation p.H103R 0.27 tolerated(0.14) benign(0.15) TCGA-FJ-A871-01 7 151945693 151945693 T C KMT2C Missense_Mutation p.H609R 0.38 benign(0.012) TCGA-FJ-A871-01 7 95157284 95157284 C T ASB4 Missense_Mutation p.A216V 0.26 tolerated(0.16) benign(0.006) TCGA-FJ-A871-01 8 109796681 109796681 C T TMEM74 Missense_Mutation p.R216H 0.25 deleterious(0) probably_damaging(0.997) TCGA-FJ-A871-01 9 114989740 114989740 A G PTBP3 Missense_Mutation p.F473L 0.41 tolerated(0.08) benign(0.122) TCGA-FJ-A871-01 9 131151578 131151578 G A URM1 Nonsense_Mutation p.W76* 0.39 TCGA-FJ-A871-01 9 17366677 17366677 T C CNTLN Missense_Mutation p.I650T 0.38 deleterious(0.01) possibly_damaging(0.736) TCGA-FJ-A871-01 9 32630828 32630828 G A TAF1L Missense_Mutation p.R1584W 0.32 deleterious(0.03) possibly_damaging(0.492) TCGA-FJ-A871-01 9 90321099 90321099 G A DAPK1 Missense_Mutation p.R1038H 0.35 deleterious(0.01) possibly_damaging(0.869) TCGA-FJ-A871-01 X 45010992 45010992 C T CXorf36 Missense_Mutation p.A403T 0.82 tolerated(0.13) benign(0.081) TCGA-FT-A3EE-01 10 103907098 103907098 C T PPRC1 Missense_Mutation p.S1450L 0.62 deleterious_low_confidence(0) benign(0.307) TCGA-FT-A3EE-01 10 23326230 23326230 C G ARMC3 Missense_Mutation p.S814C 0.32 deleterious(0.04) benign(0.169) TCGA-FT-A3EE-01 10 28970934 28970934 T A BAMBI Missense_Mutation p.H129Q 0.35 tolerated(0.62) benign(0) TCGA-FT-A3EE-01 10 38407014 38407014 C G ZNF37A Nonsense_Mutation p.S312* 0.33 TCGA-FT-A3EE-01 10 38407098 38407098 C G ZNF37A Nonsense_Mutation p.S340* 0.29 TCGA-FT-A3EE-01 10 38407406 38407406 C T ZNF37A Nonsense_Mutation p.Q443* 0.21 TCGA-FT-A3EE-01 10 38407858 38407858 C G ZNF37A 3'UTR 0.30 TCGA-FT-A3EE-01 10 75391746 75391746 G A MYOZ1 Missense_Mutation p.P281L 0.37 deleterious(0.02) benign(0.101) TCGA-FT-A3EE-01 10 90034726 90034726 G A RNLS Missense_Mutation p.P314S 0.19 deleterious_low_confidence(0) unknown(0) TCGA-FT-A3EE-01 10 97141472 97141472 G T SORBS1 Silent p.G541G 0.15 TCGA-FT-A3EE-01 11 105923955 105923955 A G KBTBD3 Silent p.S487S 0.72 TCGA-FT-A3EE-01 11 108115703 108115703 A C ATM Missense_Mutation p.Q284P 0.51 deleterious(0.04) benign(0.392) TCGA-FT-A3EE-01 11 117064644 117064645 - TCT SIDT2 In_Frame_Ins p.F767dup 0.43 TCGA-FT-A3EE-01 11 124636973 124636974 AG - MSANTD2 3'UTR 0.19 TCGA-FT-A3EE-01 11 1463777 1463777 C T BRSK2 Silent p.I203I 0.66 TCGA-FT-A3EE-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.50 deleterious(0.02) benign(0.046) TCGA-FT-A3EE-01 11 6129922 6129922 T A OR56B4 Missense_Mutation p.L305Q 0.52 tolerated(1) benign(0.047) TCGA-FT-A3EE-01 11 66636412 66636412 G C PC Silent p.T309T 0.28 TCGA-FT-A3EE-01 12 122689184 122689184 T G B3GNT4 Missense_Mutation p.S7A 0.18 tolerated_low_confidence(0.2) benign(0) TCGA-FT-A3EE-01 12 131476886 131476886 C T GPR133 Silent p.L305L 0.25 TCGA-FT-A3EE-01 12 18644430 18644430 G A PIK3C2G Missense_Mutation p.D870N 0.17 tolerated(0.4) benign(0.025) TCGA-FT-A3EE-01 12 1940432 1940432 G A LRTM2 Silent p.R133R 0.16 TCGA-FT-A3EE-01 12 27788072 27788072 C G PPFIBP1 Intron 0.50 TCGA-FT-A3EE-01 12 48135215 48135216 - C RAPGEF3 Intron 0.17 TCGA-FT-A3EE-01 12 48375154 48375154 G A COL2A1 Missense_Mutation p.A812V 0.27 unknown(0) TCGA-FT-A3EE-01 12 5020962 5020962 G T KCNA1 Nonsense_Mutation p.E140* 0.28 TCGA-FT-A3EE-01 12 53607337 53607337 G C RARG Missense_Mutation p.L321V 0.30 deleterious(0.02) benign(0.28) TCGA-FT-A3EE-01 12 96394858 96394858 T C LTA4H Missense_Mutation p.H582R 0.15 tolerated(1) benign(0) TCGA-FT-A3EE-01 13 114514838 114514838 T C TMEM255B Missense_Mutation p.F315L 0.19 tolerated(0.16) benign(0.011) TCGA-FT-A3EE-01 13 24304530 24304530 T C MIPEP Missense_Mutation p.D700G 0.62 deleterious(0) possibly_damaging(0.548) TCGA-FT-A3EE-01 13 32900694 32900694 T C BRCA2 Missense_Mutation p.M192T 0.53 deleterious(0) probably_damaging(0.998) TCGA-FT-A3EE-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.21 TCGA-FT-A3EE-01 13 49795318 49795318 G A MLNR Missense_Mutation p.R282Q 0.83 tolerated(0.8) benign(0.028) TCGA-FT-A3EE-01 13 77750673 77750673 C T MYCBP2 Missense_Mutation p.D1773N 0.20 probably_damaging(0.994) TCGA-FT-A3EE-01 14 103440459 103440459 T G CDC42BPB Missense_Mutation p.E512A 0.25 tolerated(0.06) benign(0.033) TCGA-FT-A3EE-01 14 104471727 104471727 C T TDRD9 Silent p.I566I 0.31 TCGA-FT-A3EE-01 14 24567423 24567423 G A PCK2 Missense_Mutation p.R96H 0.11 deleterious(0.04) probably_damaging(0.938) TCGA-FT-A3EE-01 14 64724104 64724104 G A ESR2 Intron 0.32 TCGA-FT-A3EE-01 14 88737156 88737156 G C KCNK10 Intron 0.29 TCGA-FT-A3EE-01 14 92278710 92278710 A G TC2N Missense_Mutation p.S83P 0.41 deleterious(0) benign(0.05) TCGA-FT-A3EE-01 15 81282111 81282111 G A MESDC2 Missense_Mutation p.R8C 0.80 tolerated(0.19) benign(0.002) TCGA-FT-A3EE-01 16 15705592 15705592 C T KIAA0430 Splice_Site p.X1159_splice 0.46 TCGA-FT-A3EE-01 16 23224042 23224042 G T SCNN1G Missense_Mutation p.E446D 0.19 tolerated(0.06) possibly_damaging(0.472) TCGA-FT-A3EE-01 16 23718361 23718361 G T ERN2 Missense_Mutation p.P164T 0.33 deleterious(0) probably_damaging(0.997) TCGA-FT-A3EE-01 16 56652606 56652606 C T MT1L RNA 0.17 TCGA-FT-A3EE-01 16 67262275 67262275 G A TMEM208 Silent p.V40V 0.25 TCGA-FT-A3EE-01 16 88666210 88666211 - GC ZC3H18 Frame_Shift_Ins p.T316Qfs*18 0.16 TCGA-FT-A3EE-01 17 10298707 10298707 T A MYH8 Missense_Mutation p.N1569Y 0.26 deleterious(0) possibly_damaging(0.797) TCGA-FT-A3EE-01 17 3936218 3936218 G A ZZEF1 Silent p.V2221V 0.33 TCGA-FT-A3EE-01 17 42462976 42462976 C T ITGA2B Missense_Mutation p.E173K 0.50 deleterious(0.04) probably_damaging(0.996) TCGA-FT-A3EE-01 17 4859385 4859385 C A ENO3 Missense_Mutation p.N338K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-FT-A3EE-01 17 62496243 62496243 T C DDX5 Missense_Mutation p.N548S 0.49 tolerated_low_confidence(0.61) benign(0.001) TCGA-FT-A3EE-01 17 72741012 72741012 G T RAB37 Missense_Mutation p.A150S 0.36 tolerated(0.21) benign(0.17) TCGA-FT-A3EE-01 17 7734577 7734577 C T DNAH2 Missense_Mutation p.S4135F 0.16 probably_damaging(0.979) TCGA-FT-A3EE-01 17 8417200 8417200 C T MYH10 Silent p.K839K 0.58 TCGA-FT-A3EE-01 18 28737511 28737511 C G DSC1 Silent p.S58S 0.24 TCGA-FT-A3EE-01 19 10099815 10099815 T C COL5A3 Silent p.G710G 0.35 TCGA-FT-A3EE-01 19 11417292 11417292 G T TSPAN16 Missense_Mutation p.G155W 0.38 deleterious(0.02) probably_damaging(1) TCGA-FT-A3EE-01 19 19646428 19646428 C T YJEFN3 Missense_Mutation p.R212C 0.25 tolerated(0.11) benign(0.029) TCGA-FT-A3EE-01 19 2290209 2290209 C T LINGO3 Missense_Mutation p.D523N 0.56 deleterious(0) probably_damaging(0.997) TCGA-FT-A3EE-01 19 31768141 31768141 T A TSHZ3 Missense_Mutation p.N853I 0.19 tolerated(0.24) probably_damaging(0.999) TCGA-FT-A3EE-01 19 36229445 36229445 G A KMT2B Missense_Mutation p.R2712Q 0.43 possibly_damaging(0.706) TCGA-FT-A3EE-01 19 38709576 38709576 A G DPF1 Missense_Mutation p.C168R 0.42 tolerated(0.36) benign(0.005) TCGA-FT-A3EE-01 19 45593825 45593825 A G GEMIN7 3'UTR 0.23 TCGA-FT-A3EE-01 19 45872380 45872380 G A ERCC2 Missense_Mutation p.S44L 0.19 deleterious(0) possibly_damaging(0.87) TCGA-FT-A3EE-01 19 47422438 47422438 G A ARHGAP35 Missense_Mutation p.G169D 0.43 tolerated(0.07) probably_damaging(0.976) TCGA-FT-A3EE-01 19 58232719 58232719 T C ZNF671 Silent p.K245K 0.25 TCGA-FT-A3EE-01 19 6418059 6418059 C T KHSRP Missense_Mutation p.R304Q 0.19 deleterious(0.02) benign(0.017) TCGA-FT-A3EE-01 19 8398105 8398105 G A KANK3 Missense_Mutation p.R577C 0.11 deleterious(0) possibly_damaging(0.835) TCGA-FT-A3EE-01 1 108679216 108679216 A G SLC25A24 3'UTR 0.24 TCGA-FT-A3EE-01 1 109242068 109242068 G A PRPF38B Missense_Mutation p.R356K 0.24 tolerated(0.16) unknown(0) TCGA-FT-A3EE-01 1 114340631 114340631 T C RSBN1 Missense_Mutation p.Q244R 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.805) TCGA-FT-A3EE-01 1 120438648 120438648 A T ADAM30 Silent p.P104P 0.49 TCGA-FT-A3EE-01 1 144922560 144922560 T C PDE4DIP Missense_Mutation p.I283V 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-FT-A3EE-01 1 152487972 152487972 C A CRCT1 Missense_Mutation p.S38Y 0.37 unknown(0) TCGA-FT-A3EE-01 1 153509783 153509783 C T S100A5 Missense_Mutation p.D90N 0.48 tolerated(0.32) benign(0.007) TCGA-FT-A3EE-01 1 159032388 159032388 G - AIM2 3'UTR 0.47 TCGA-FT-A3EE-01 1 161771931 161771931 G A ATF6 Missense_Mutation p.G260R 0.26 tolerated(0.07) benign(0.078) TCGA-FT-A3EE-01 1 171707494 171707494 C T VAMP4 Missense_Mutation p.E21K 0.20 deleterious(0.01) possibly_damaging(0.669) TCGA-FT-A3EE-01 1 223116445 223116445 C T DISP1 Missense_Mutation p.H94Y 0.23 deleterious(0.02) benign(0.332) TCGA-FT-A3EE-01 1 235884187 235884187 G C LYST Missense_Mutation p.H3112D 0.18 deleterious(0.01) benign(0.135) TCGA-FT-A3EE-01 1 247025300 247025300 T A AHCTF1 Silent p.S1241S 0.48 TCGA-FT-A3EE-01 1 2520046 2520046 C T FAM213B Silent p.L178L 0.28 TCGA-FT-A3EE-01 1 35227230 35227230 C T GJB4 Silent p.G125G 0.35 TCGA-FT-A3EE-01 1 36055616 36055616 G A TFAP2E Missense_Mutation p.A291T 0.10 deleterious(0.04) probably_damaging(0.948) TCGA-FT-A3EE-01 1 40236123 40236123 C T OXCT2 Missense_Mutation p.V269M 0.17 deleterious(0.01) possibly_damaging(0.797) TCGA-FT-A3EE-01 1 957650 957650 A G AGRN Missense_Mutation p.K91E 0.33 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-FT-A3EE-01 20 35579911 35579911 C T SAMHD1 Missense_Mutation p.G46S 0.17 tolerated(0.1) benign(0.048) TCGA-FT-A3EE-01 20 46282310 46282310 G A NCOA3 3'UTR 0.49 TCGA-FT-A3EE-01 20 5904525 5904525 G T CHGB Missense_Mutation p.D579Y 0.23 deleterious(0.02) probably_damaging(1) TCGA-FT-A3EE-01 20 60714933 60714933 G A PSMA7 Silent p.I84I 0.42 TCGA-FT-A3EE-01 20 61527666 61527666 A T DIDO1 Missense_Mutation p.F711L 0.28 probably_damaging(0.997) TCGA-FT-A3EE-01 21 40569194 40569194 G A BRWD1 Missense_Mutation p.T1934M 0.65 tolerated_low_confidence(0.22) benign(0.015) TCGA-FT-A3EE-01 22 31032724 31032724 G A SLC35E4 Missense_Mutation p.R96Q 0.79 tolerated(0.53) benign(0.057) TCGA-FT-A3EE-01 2 121747297 121747297 C T GLI2 Silent p.S1269S 0.62 TCGA-FT-A3EE-01 2 130897506 130897506 G A CCDC74B Missense_Mutation p.T322M 0.31 tolerated(0.62) benign(0.004) TCGA-FT-A3EE-01 2 207169788 207169789 - C ZDBF2 Frame_Shift_Ins p.V182Sfs*4 0.34 TCGA-FT-A3EE-01 2 227779059 227779059 G - RHBDD1 Frame_Shift_Del p.D284Tfs*21 0.40 TCGA-FT-A3EE-01 2 238726589 238726589 G A RBM44 Missense_Mutation p.G344R 0.59 tolerated(0.06) benign(0.323) TCGA-FT-A3EE-01 2 26624885 26624885 C T DRC1 Silent p.L10L 0.26 TCGA-FT-A3EE-01 2 37032673 37032673 G T VIT Missense_Mutation p.G419C 0.18 deleterious(0) probably_damaging(1) TCGA-FT-A3EE-01 2 3750104 3750104 G A ALLC Missense_Mutation p.R376Q 0.31 tolerated_low_confidence(0.17) benign(0.061) TCGA-FT-A3EE-01 2 71368431 71368431 T A MPHOSPH10 Missense_Mutation p.L460I 0.33 deleterious(0) probably_damaging(1) TCGA-FT-A3EE-01 2 96072867 96072867 G C FAHD2A Missense_Mutation p.G142R 0.39 deleterious(0) probably_damaging(0.998) TCGA-FT-A3EE-01 3 194174455 194174455 G A ATP13A3 Missense_Mutation p.S273L 0.44 deleterious(0) benign(0.143) TCGA-FT-A3EE-01 3 195599181 195599181 G C TNK2 Missense_Mutation p.R536G 0.23 tolerated(0.28) benign(0.024) TCGA-FT-A3EE-01 3 196530009 196530009 A C PAK2 Missense_Mutation p.Q137P 0.66 deleterious(0.01) benign(0.005) TCGA-FT-A3EE-01 3 197712742 197712742 C T LMLN Missense_Mutation p.L304F 0.62 deleterious(0.05) possibly_damaging(0.618) TCGA-FT-A3EE-01 3 27762902 27762902 C T EOMES Intron 0.55 TCGA-FT-A3EE-01 3 36779198 36779198 G A DCLK3 Missense_Mutation p.P318L 0.29 tolerated(0.48) benign(0.004) TCGA-FT-A3EE-01 3 3886952 3886952 G A LRRN1 Missense_Mutation p.M209I 0.36 deleterious(0.01) benign(0.088) TCGA-FT-A3EE-01 3 44762896 44762896 C T ZNF502 Missense_Mutation p.S196L 0.30 deleterious(0.01) possibly_damaging(0.834) TCGA-FT-A3EE-01 3 48224431 48224431 C A CDC25A Missense_Mutation p.E139D 0.32 tolerated(0.13) benign(0.061) TCGA-FT-A3EE-01 3 48682555 48682555 G A CELSR3 Missense_Mutation p.R2629C 0.39 deleterious(0) probably_damaging(1) TCGA-FT-A3EE-01 3 56662575 56662575 A G FAM208A Missense_Mutation p.L1272S 0.28 deleterious(0.05) possibly_damaging(0.9) TCGA-FT-A3EE-01 4 57842668 57842668 C T NOA1 Missense_Mutation p.D362N 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-FT-A3EE-01 4 8412072 8412072 A G ACOX3 Missense_Mutation p.I185T 0.61 deleterious(0) possibly_damaging(0.875) TCGA-FT-A3EE-01 4 88312220 88312220 C T HSD17B11 Translation_Start_Site p.M1? 0.59 deleterious(0.02) possibly_damaging(0.775) TCGA-FT-A3EE-01 5 112257852 112257852 G A REEP5 Silent p.F12F 0.15 TCGA-FT-A3EE-01 5 139193876 139193876 C G PSD2 Missense_Mutation p.H315D 0.34 tolerated(0.06) benign(0.116) TCGA-FT-A3EE-01 5 140176494 140176494 G A PCDHA2 Missense_Mutation p.V649M 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FT-A3EE-01 5 140431567 140431567 C A PCDHB1 Missense_Mutation p.T171N 0.14 deleterious(0.03) possibly_damaging(0.769) TCGA-FT-A3EE-01 5 1406324 1406324 C A SLC6A3 Silent p.L526L 0.40 TCGA-FT-A3EE-01 5 140811312 140811312 C T PCDHGA12 Missense_Mutation p.A329V 0.41 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-FT-A3EE-01 5 147781970 147781974 TCATA - FBXO38 Frame_Shift_Del p.H163Ffs*6 0.26 TCGA-FT-A3EE-01 5 159520621 159520621 A G PWWP2A Missense_Mutation p.S346P 0.21 tolerated(0.14) benign(0.008) TCGA-FT-A3EE-01 5 171773245 171773245 C T SH3PXD2B Silent p.P361P 0.18 TCGA-FT-A3EE-01 5 179263587 179263587 G A SQSTM1 Silent p.P439P 0.43 TCGA-FT-A3EE-01 5 180486555 180486555 C T BTNL9 Missense_Mutation p.A434V 0.47 tolerated(0.08) possibly_damaging(0.475) TCGA-FT-A3EE-01 5 236602 236602 G A SDHA Silent p.E440E 0.27 TCGA-FT-A3EE-01 5 37834771 37834771 G A GDNF Missense_Mutation p.A60V 0.15 tolerated(0.5) benign(0.004) TCGA-FT-A3EE-01 5 89990019 89990019 C A GPR98 Nonsense_Mutation p.Y2482* 0.15 TCGA-FT-A3EE-01 6 13639851 13639851 T C RANBP9 Missense_Mutation p.H490R 0.41 deleterious(0.04) possibly_damaging(0.803) TCGA-FT-A3EE-01 6 31477644 31477644 G C MICB Silent p.L370L 0.41 TCGA-FT-A3EE-01 6 37429339 37429339 G A CMTR1 Silent p.E370E 0.14 TCGA-FT-A3EE-01 6 42179605 42179605 C G MRPS10 Missense_Mutation p.L79F 0.36 deleterious(0.04) probably_damaging(0.987) TCGA-FT-A3EE-01 7 100244899 100244899 G A ACTL6B Silent p.I256I 0.48 TCGA-FT-A3EE-01 7 12271625 12271625 G A TMEM106B 3'UTR 0.36 TCGA-FT-A3EE-01 7 124386891 124386891 G C GPR37 Missense_Mutation p.I510M 0.23 deleterious(0) probably_damaging(0.992) TCGA-FT-A3EE-01 7 137028253 137028253 G A PTN 5'UTR 0.12 TCGA-FT-A3EE-01 7 149558351 149558351 T C ZNF862 Missense_Mutation p.M701T 0.21 tolerated(0.12) benign(0.004) TCGA-FT-A3EE-01 7 151042482 151042482 G T NUB1 Missense_Mutation p.R40M 0.28 deleterious(0) probably_damaging(0.994) TCGA-FT-A3EE-01 7 24331360 24331360 C T NPY 3'UTR 0.26 TCGA-FT-A3EE-01 7 26237281 26237281 C T HNRNPA2B1 Silent p.R38R 0.22 TCGA-FT-A3EE-01 7 27868509 27868509 A G TAX1BP1 3'UTR 0.29 TCGA-FT-A3EE-01 7 42005031 42005031 G A GLI3 Nonsense_Mutation p.Q1214* 0.40 TCGA-FT-A3EE-01 7 45108111 45108111 C A CCM2 Missense_Mutation p.S202Y 0.42 deleterious(0.01) probably_damaging(0.947) TCGA-FT-A3EE-01 7 53103824 53103824 C T POM121L12 Missense_Mutation p.P154S 0.31 tolerated(0.27) probably_damaging(0.932) TCGA-FT-A3EE-01 7 75023544 75023544 C T TRIM73 5'Flank 0.15 TCGA-FT-A3EE-01 7 78130897 78130897 A G MAGI2 Missense_Mutation p.I321T 0.20 deleterious(0) probably_damaging(0.999) TCGA-FT-A3EE-01 7 82580339 82580339 C T PCLO Missense_Mutation p.E3189K 0.39 unknown(0) TCGA-FT-A3EE-01 7 87762258 87762258 G A ADAM22 Missense_Mutation p.V357M 0.08 deleterious(0) probably_damaging(0.994) TCGA-FT-A3EE-01 8 24771306 24771306 G A NEFM 5'UTR 0.44 TCGA-FT-A3EE-01 8 30702216 30702216 C A TEX15 Missense_Mutation p.D1440Y 0.22 deleterious(0) benign(0.091) TCGA-FT-A3EE-01 8 48690396 48690396 G A PRKDC Missense_Mutation p.R3964C 0.16 probably_damaging(0.961) TCGA-FT-A3EE-01 8 8235550 8235550 C T SGK223 Silent p.P123P 0.65 TCGA-FT-A3EE-01 8 98288754 98288754 G A TSPYL5 3'UTR 0.37 TCGA-FT-A3EE-01 9 114151916 114151916 G T KIAA0368 Missense_Mutation p.R1301S 0.42 deleterious(0) probably_damaging(0.995) TCGA-FT-A3EE-01 9 115652599 115652599 G A SLC46A2 Silent p.L121L 0.67 TCGA-FT-A3EE-01 X 11206894 11206894 G A ARHGAP6 Missense_Mutation p.S344L 0.33 tolerated(0.18) benign(0.018) TCGA-FT-A3EE-01 X 128638781 128638781 T C SMARCA1 Splice_Site p.X367_splice 0.40 TCGA-FT-A3EE-01 X 151997114 151997114 C A CETN2 Missense_Mutation p.E132D 0.43 deleterious(0.04) benign(0.105) TCGA-FT-A3EE-01 X 34960988 34960988 G A FAM47B Missense_Mutation p.G14S 0.20 deleterious(0.01) probably_damaging(1) TCGA-FT-A3EE-01 X 44935950 44935951 - T KDM6A Frame_Shift_Ins p.K905* 0.12 TCGA-FT-A3EE-01 X 48934088 48934088 C T WDR45 Splice_Site p.X147_splice 0.05 TCGA-FT-A3EE-01 X 62570455 62570455 C G SPIN4 Missense_Mutation p.D82H 0.19 deleterious(0.02) probably_damaging(1) TCGA-FT-A3EE-01 X 70349240 70349240 G A MED12 Missense_Mutation p.G1218R 0.24 probably_damaging(0.991) TCGA-FT-A61P-01 10 115531770 115531770 C T PLEKHS1 Silent p.H192H 0.12 TCGA-FT-A61P-01 10 135371378 135371378 C T SYCE1 Missense_Mutation p.E122K 0.17 tolerated(0.09) probably_damaging(0.929) TCGA-FT-A61P-01 10 15688989 15688989 T C ITGA8 Missense_Mutation p.R355G 0.18 deleterious(0.01) possibly_damaging(0.582) TCGA-FT-A61P-01 10 17032461 17032461 G T CUBN Missense_Mutation p.P1408T 0.10 deleterious(0) probably_damaging(0.99) TCGA-FT-A61P-01 10 23326372 23326372 G C ARMC3 Missense_Mutation p.L861F 0.23 tolerated(0.72) benign(0.439) TCGA-FT-A61P-01 10 52570846 52570846 A G A1CF Silent p.L480L 0.18 TCGA-FT-A61P-01 10 70156625 70156625 G A RUFY2 Nonsense_Mutation p.R139* 0.24 TCGA-FT-A61P-01 10 70960244 70960244 G A SUPV3L1 Missense_Mutation p.D503N 0.22 deleterious(0.02) benign(0.008) TCGA-FT-A61P-01 11 118780725 118780725 C T BCL9L 5'UTR 0.31 TCGA-FT-A61P-01 11 119027295 119027295 C G ABCG4 Missense_Mutation p.Q278E 0.28 deleterious(0.03) benign(0.075) TCGA-FT-A61P-01 11 20673915 20673915 C T SLC6A5 Silent p.L717L 0.31 TCGA-FT-A61P-01 11 33079495 33079495 A G TCP11L1 Missense_Mutation p.T150A 0.12 deleterious(0.03) benign(0.394) TCGA-FT-A61P-01 11 49176018 49176018 T C FOLH1 Silent p.P550P 0.13 TCGA-FT-A61P-01 11 4936735 4936735 G T OR51G2 Silent p.I53I 0.33 TCGA-FT-A61P-01 11 55418487 55418487 T G OR4S2 Missense_Mutation p.I36M 0.28 deleterious(0.01) possibly_damaging(0.907) TCGA-FT-A61P-01 11 55944688 55944688 C T OR5J2 Silent p.L199L 0.76 TCGA-FT-A61P-01 11 61213481 61213481 A G SDHAF2 Missense_Mutation p.K147E 0.19 tolerated(0.45) benign(0.015) TCGA-FT-A61P-01 11 61249873 61249873 T C PPP1R32 Missense_Mutation p.L67P 0.11 deleterious(0) probably_damaging(0.973) TCGA-FT-A61P-01 11 74716798 74716798 T A NEU3 Missense_Mutation p.I216N 0.17 deleterious(0) probably_damaging(0.939) TCGA-FT-A61P-01 11 89938633 89938633 C G CHORDC1 Missense_Mutation p.D222H 0.32 deleterious(0.03) possibly_damaging(0.592) TCGA-FT-A61P-01 11 94917602 94917602 G A SESN3 Missense_Mutation p.H307Y 0.07 tolerated(0.48) benign(0.003) TCGA-FT-A61P-01 12 111099209 111099209 G T HVCN1 Missense_Mutation p.S22R 0.14 deleterious(0) possibly_damaging(0.646) TCGA-FT-A61P-01 12 132502854 132502854 A G EP400 Missense_Mutation p.M1404V 0.28 unknown(0) TCGA-FT-A61P-01 12 15794728 15794729 - T EPS8 Nonsense_Mutation p.Y535* 0.11 TCGA-FT-A61P-01 12 20864424 20864424 C T SLCO1C1 Missense_Mutation p.S170L 0.12 deleterious(0.04) benign(0.006) TCGA-FT-A61P-01 12 22814095 22814095 A G ETNK1 Missense_Mutation p.H308R 0.18 deleterious(0) probably_damaging(0.999) TCGA-FT-A61P-01 12 3702374 3702374 A T PRMT8 3'UTR 0.16 TCGA-FT-A61P-01 12 57674219 57674219 C A R3HDM2 Missense_Mutation p.Q408H 0.11 tolerated(0.18) possibly_damaging(0.646) TCGA-FT-A61P-01 12 76461248 76461248 G A NAP1L1 Nonsense_Mutation p.Q37* 0.17 TCGA-FT-A61P-01 13 23906234 23906234 C T SACS Silent p.A3927A 0.20 TCGA-FT-A61P-01 13 39266581 39266581 G A FREM2 Silent p.V1700V 0.16 TCGA-FT-A61P-01 13 44455284 44455284 G A LACC1 Missense_Mutation p.D55N 0.11 tolerated(0.75) benign(0.001) TCGA-FT-A61P-01 13 48986488 48986488 G A LPAR6 Silent p.F24F 0.13 TCGA-FT-A61P-01 14 102873781 102873781 C G TECPR2 Nonsense_Mutation p.S109* 0.19 TCGA-FT-A61P-01 14 23586911 23586911 G T CEBPE Silent p.R211R 0.31 TCGA-FT-A61P-01 14 23894224 23894224 C T MYH7 Silent p.L811L 0.11 TCGA-FT-A61P-01 14 58604790 58604790 A G C14orf37 Silent p.D429D 0.12 TCGA-FT-A61P-01 14 59112838 59112838 G T DACT1 Missense_Mutation p.E499D 0.13 tolerated(0.24) benign(0.034) TCGA-FT-A61P-01 14 75470322 75470322 T G EIF2B2 Missense_Mutation p.L118R 0.07 tolerated(0.53) benign(0.063) TCGA-FT-A61P-01 14 78205383 78205383 C T SNW1 Missense_Mutation p.D118N 0.14 deleterious(0.03) benign(0.213) TCGA-FT-A61P-01 15 23812158 23812158 G T MKRN3 Missense_Mutation p.C410F 0.11 deleterious(0) probably_damaging(0.998) TCGA-FT-A61P-01 15 28493883 28493883 C G HERC2 Splice_Site p.X1017_splice 0.09 TCGA-FT-A61P-01 15 34534400 34534400 T G SLC12A6 Missense_Mutation p.S689R 0.20 tolerated(0.08) benign(0.033) TCGA-FT-A61P-01 15 41102355 41102355 A G ZFYVE19 Missense_Mutation p.M220V 0.14 tolerated(0.05) benign(0.027) TCGA-FT-A61P-01 15 42459726 42459726 G A VPS39 Nonsense_Mutation p.Q415* 0.23 TCGA-FT-A61P-01 15 43783873 43783873 G A TP53BP1 Missense_Mutation p.T122I 0.09 tolerated(0.16) possibly_damaging(0.625) TCGA-FT-A61P-01 15 65808022 65808022 C T DPP8 Silent p.K3K 0.21 TCGA-FT-A61P-01 15 75722684 75722684 C T SIN3A Silent p.P11P 0.07 TCGA-FT-A61P-01 15 78305193 78305193 C T TBC1D2B Missense_Mutation p.D748N 0.24 tolerated(0.11) probably_damaging(1) TCGA-FT-A61P-01 15 91496417 91496417 C T UNC45A Silent p.D818D 0.11 TCGA-FT-A61P-01 16 18883572 18883572 T C SMG1 Missense_Mutation p.H706R 0.15 deleterious(0.01) probably_damaging(0.977) TCGA-FT-A61P-01 16 23080278 23080278 C T USP31 Missense_Mutation p.E1050K 0.11 tolerated_low_confidence(0.59) benign(0.146) TCGA-FT-A61P-01 16 24124303 24124303 A C PRKCB Missense_Mutation p.L277F 0.28 tolerated(0.07) possibly_damaging(0.53) TCGA-FT-A61P-01 16 27078340 27078340 C A C16orf82 RNA 0.24 TCGA-FT-A61P-01 16 29113437 29113437 C G RRN3P2 RNA 0.10 TCGA-FT-A61P-01 16 3779158 3779158 G A CREBBP Missense_Mutation p.R1964C 0.44 unknown(0) TCGA-FT-A61P-01 16 55362903 55362903 G A IRX6 Missense_Mutation p.R338K 0.13 tolerated(0.71) benign(0.021) TCGA-FT-A61P-01 16 58577645 58577645 C G CNOT1 Missense_Mutation p.E1434Q 0.30 deleterious(0) probably_damaging(0.973) TCGA-FT-A61P-01 16 67322218 67322218 G A PLEKHG4 Silent p.L1123L 0.05 TCGA-FT-A61P-01 16 67698964 67698964 G A ENKD1 Silent p.L130L 0.16 TCGA-FT-A61P-01 16 67867766 67867766 C T CENPT 5'UTR 0.21 TCGA-FT-A61P-01 17 10545863 10545863 C T MYH3 Missense_Mutation p.V587M 0.10 deleterious(0) probably_damaging(0.997) TCGA-FT-A61P-01 17 2278935 2278935 A T SGSM2 Silent p.S750S 0.10 TCGA-FT-A61P-01 17 38152557 38152557 C T PSMD3 Missense_Mutation p.S481F 0.11 deleterious(0.01) possibly_damaging(0.781) TCGA-FT-A61P-01 17 38923904 38923904 T C KRT26 Missense_Mutation p.K397E 0.10 tolerated(0.62) benign(0.062) TCGA-FT-A61P-01 17 39137373 39137373 C T KRT40 Missense_Mutation p.D240N 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-FT-A61P-01 17 39197178 39197178 A G KRTAP1-1 Missense_Mutation p.Y158H 0.10 deleterious(0.05) probably_damaging(0.992) TCGA-FT-A61P-01 17 39911993 39911993 C T JUP 3'UTR 0.19 TCGA-FT-A61P-01 17 39967426 39967426 G A LEPREL4 Silent p.V191V 0.09 TCGA-FT-A61P-01 17 46691976 46691976 C T HOXB8 Missense_Mutation p.D31N 0.15 tolerated(0.38) benign(0.149) TCGA-FT-A61P-01 17 48598774 48598774 C G MYCBPAP Missense_Mutation p.S420C 0.23 deleterious(0) probably_damaging(0.986) TCGA-FT-A61P-01 17 48599354 48599354 C G MYCBPAP Missense_Mutation p.S433C 0.29 tolerated(0.1) benign(0.009) TCGA-FT-A61P-01 17 62568017 62568017 G C SMURF2 Missense_Mutation p.I305M 0.09 tolerated(1) benign(0.139) TCGA-FT-A61P-01 17 6502568 6502568 G T KIAA0753 Missense_Mutation p.P721T 0.12 tolerated(0.27) benign(0.088) TCGA-FT-A61P-01 17 7165263 7165263 A C CLDN7 Missense_Mutation p.S34A 0.10 tolerated(0.59) benign(0.192) TCGA-FT-A61P-01 17 72350408 72350436 GAGCGCAGCAGCCTGTCCCTGCACTCACT - KIF19 Frame_Shift_Del p.S808Gfs*26 0.24 TCGA-FT-A61P-01 17 7401030 7401030 G T POLR2A Missense_Mutation p.G348V 0.09 probably_damaging(1) TCGA-FT-A61P-01 18 12725500 12725500 T C PSMG2 Silent p.F255F 0.15 TCGA-FT-A61P-01 18 18690940 18690940 C T ROCK1 5'UTR 0.19 TCGA-FT-A61P-01 18 19110296 19110296 A G ESCO1 3'UTR 0.28 TCGA-FT-A61P-01 18 29788197 29788197 G A MEP1B Silent p.G294G 0.09 TCGA-FT-A61P-01 19 10945678 10945678 C A TMED1 Nonsense_Mutation p.E133* 0.11 TCGA-FT-A61P-01 19 12738587 12738587 G C ZNF791 Missense_Mutation p.E82Q 0.23 deleterious(0.03) possibly_damaging(0.629) TCGA-FT-A61P-01 19 14876137 14876137 T C EMR2 Missense_Mutation p.I301V 0.20 tolerated(0.11) benign(0.02) TCGA-FT-A61P-01 19 36673827 36673827 G C ZNF565 Missense_Mutation p.S347R 0.14 tolerated(0.49) benign(0.008) TCGA-FT-A61P-01 19 39125855 39125855 G A EIF3K Intron 0.19 TCGA-FT-A61P-01 19 40357464 40357464 G A FCGBP Silent p.I5283I 0.38 TCGA-FT-A61P-01 19 41265431 41265431 G C SNRPA Missense_Mutation p.K114N 0.29 tolerated(0.1) benign(0.379) TCGA-FT-A61P-01 19 45872380 45872380 G A ERCC2 Missense_Mutation p.S44L 0.29 deleterious(0) possibly_damaging(0.87) TCGA-FT-A61P-01 19 50804980 50804980 G A MYH14 Silent p.G1844G 0.13 TCGA-FT-A61P-01 19 50804981 50804981 C A MYH14 Silent p.R1845R 0.13 TCGA-FT-A61P-01 19 55143568 55143568 A C LILRB1 Missense_Mutation p.I181L 0.16 tolerated(1) benign(0) TCGA-FT-A61P-01 19 9020798 9020798 G A MUC16 Missense_Mutation p.P12435L 0.17 possibly_damaging(0.609) TCGA-FT-A61P-01 1 102269957 102269957 G A OLFM3 Missense_Mutation p.S405F 0.13 deleterious(0) probably_damaging(0.998) TCGA-FT-A61P-01 1 109554150 109554150 G A WDR47 Missense_Mutation p.A180V 0.14 tolerated(0.1) benign(0.094) TCGA-FT-A61P-01 1 109566102 109566102 C A WDR47 Missense_Mutation p.E11D 0.08 deleterious(0) probably_damaging(0.998) TCGA-FT-A61P-01 1 110134819 110134819 C T GNAI3 Silent p.I343I 0.14 TCGA-FT-A61P-01 1 13036288 13036288 A C PRAMEF22 Silent p.G120G 0.11 TCGA-FT-A61P-01 1 148594621 148594621 G A NBPF15 Missense_Mutation p.G665E 0.34 tolerated_low_confidence(0.63) benign(0.034) TCGA-FT-A61P-01 1 149949464 149949464 C T OTUD7B 5'UTR 0.13 TCGA-FT-A61P-01 1 150259408 150259408 A T C1orf51 3'UTR 0.08 TCGA-FT-A61P-01 1 151141526 151141526 G A SCNM1 Missense_Mutation p.D220N 0.10 deleterious(0) probably_damaging(0.999) TCGA-FT-A61P-01 1 151261684 151261684 C G ZNF687 Missense_Mutation p.S803C 0.11 deleterious(0) probably_damaging(0.999) TCGA-FT-A61P-01 1 152283597 152283597 T G FLG Missense_Mutation p.E1255D 0.08 possibly_damaging(0.523) TCGA-FT-A61P-01 1 154574770 154574770 C G ADAR Missense_Mutation p.R116S 0.08 deleterious(0.01) benign(0.071) TCGA-FT-A61P-01 1 155025176 155025176 G C ADAM15 Missense_Mutation p.E37Q 0.25 tolerated(0.33) possibly_damaging(0.904) TCGA-FT-A61P-01 1 15986433 15986433 G C RSC1A1 Missense_Mutation p.G24R 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-FT-A61P-01 1 196309549 196309549 G A KCNT2 Nonsense_Mutation p.Q569* 0.08 TCGA-FT-A61P-01 1 197032154 197032154 C A F13B Missense_Mutation p.G33V 0.22 deleterious(0) probably_damaging(1) TCGA-FT-A61P-01 1 213068664 213068664 T C FLVCR1 3'UTR 0.12 TCGA-FT-A61P-01 1 235904826 235904826 A C LYST Missense_Mutation p.L2752V 0.25 deleterious(0.03) benign(0.007) TCGA-FT-A61P-01 1 2430643 2430643 C T PLCH2 Missense_Mutation p.T825M 0.20 deleterious(0) probably_damaging(1) TCGA-FT-A61P-01 1 28293439 28293439 C T XKR8 Missense_Mutation p.H306Y 0.10 tolerated(0.5) benign(0.013) TCGA-FT-A61P-01 1 33295564 33295564 G T S100PBP Splice_Site p.X307_splice 0.18 TCGA-FT-A61P-01 1 36788625 36788625 C T EVA1B Missense_Mutation p.R5Q 0.19 deleterious(0.04) benign(0.026) TCGA-FT-A61P-01 1 46714048 46714048 T A RAD54L 5'UTR 0.26 TCGA-FT-A61P-01 1 52277750 52277750 C T NRD1 Silent p.V633V 0.17 TCGA-FT-A61P-01 1 52704249 52704249 T G ZFYVE9 Missense_Mutation p.L387R 0.16 deleterious_low_confidence(0) benign(0.444) TCGA-FT-A61P-01 1 54610248 54610248 G A CDCP2 Silent p.C106C 0.10 TCGA-FT-A61P-01 1 78098097 78098097 C T ZZZ3 Missense_Mutation p.E315K 0.09 deleterious(0.02) possibly_damaging(0.891) TCGA-FT-A61P-01 1 85787233 85787233 C A DDAH1 Missense_Mutation p.D254Y 0.12 deleterious(0.01) benign(0.036) TCGA-FT-A61P-01 20 10603323 10603323 A G SLX4IP Missense_Mutation p.T175A 0.06 tolerated(0.28) benign(0.179) TCGA-FT-A61P-01 20 33334671 33334671 G - NCOA6 Frame_Shift_Del p.Q952Kfs*82 0.18 TCGA-FT-A61P-01 20 33345607 33345607 G - NCOA6 Frame_Shift_Del p.P315Lfs*24 0.26 TCGA-FT-A61P-01 20 33891852 33891852 C A UQCC1 Missense_Mutation p.M262I 0.17 tolerated(0.17) benign(0.001) TCGA-FT-A61P-01 20 37198625 37198625 G A RALGAPB Missense_Mutation p.R1350H 0.37 tolerated(0.06) possibly_damaging(0.822) TCGA-FT-A61P-01 20 42331514 42331514 G C MYBL2 Missense_Mutation p.V446L 0.20 deleterious(0.05) benign(0.126) TCGA-FT-A61P-01 20 58569409 58569409 G C CDH26 Missense_Mutation p.E511Q 0.11 tolerated(0.07) possibly_damaging(0.447) TCGA-FT-A61P-01 21 44841220 44841220 G A SIK1 Missense_Mutation p.S176L 0.16 tolerated(0.1) benign(0.138) TCGA-FT-A61P-01 22 41572402 41572403 - C EP300 Frame_Shift_Ins p.R1645Pfs*28 0.25 TCGA-FT-A61P-01 22 46776828 46776828 A G CELSR1 Silent p.N2371N 0.14 TCGA-FT-A61P-01 22 51159754 51159754 A T SHANK3 Missense_Mutation p.S1181C 0.14 possibly_damaging(0.818) TCGA-FT-A61P-01 2 11716615 11716615 A G GREB1 Silent p.A197A 0.16 TCGA-FT-A61P-01 2 119604405 119604405 C T EN1 Silent p.P113P 0.29 TCGA-FT-A61P-01 2 162273338 162273338 C T TBR1 Silent p.I139I 0.10 TCGA-FT-A61P-01 2 165584636 165584636 C T COBLL1 Silent p.S168S 0.09 TCGA-FT-A61P-01 2 176945543 176945543 C T EVX2 Missense_Mutation p.M241I 0.24 deleterious(0) benign(0.283) TCGA-FT-A61P-01 2 179600722 179600722 T C TTN Silent p.T4817T 0.18 TCGA-FT-A61P-01 2 18113819 18113819 C T KCNS3 3'UTR 0.10 TCGA-FT-A61P-01 2 197990744 197990744 C G ANKRD44 Missense_Mutation p.L93F 0.26 deleterious(0) probably_damaging(1) TCGA-FT-A61P-01 2 213914560 213914560 G A IKZF2 Nonsense_Mutation p.Q151* 0.23 TCGA-FT-A61P-01 2 220404516 220404516 G C CHPF Missense_Mutation p.F639L 0.42 deleterious(0) probably_damaging(0.996) TCGA-FT-A61P-01 2 27552094 27552094 G A GTF3C2 Missense_Mutation p.R645C 0.23 deleterious(0) probably_damaging(0.984) TCGA-FT-A61P-01 2 31489523 31489523 C T EHD3 Silent p.L521L 0.11 TCGA-FT-A61P-01 2 37459293 37459293 G C NDUFAF7 Missense_Mutation p.E34Q 0.10 tolerated(0.28) benign(0.066) TCGA-FT-A61P-01 2 48807857 48807857 C T STON1-GTF2A1L Silent p.L29L 0.12 TCGA-FT-A61P-01 2 70315742 70315742 C T PCBP1 Silent p.N289N 0.09 TCGA-FT-A61P-01 2 96992694 96992694 C T ITPRIPL1 Silent p.L117L 0.14 TCGA-FT-A61P-01 3 108572741 108572741 T C TRAT1 3'UTR 0.09 TCGA-FT-A61P-01 3 113761588 113761588 G A KIAA1407 Missense_Mutation p.P126L 0.11 tolerated(0.07) benign(0.021) TCGA-FT-A61P-01 3 119720999 119720999 G A GSK3B Missense_Mutation p.T59I 0.15 tolerated(0.3) benign(0.005) TCGA-FT-A61P-01 3 119812282 119812282 G A GSK3B 5'UTR 0.28 TCGA-FT-A61P-01 3 13669417 13669417 C T FBLN2 Silent p.A839A 0.15 TCGA-FT-A61P-01 3 151101574 151101574 G T MED12L Missense_Mutation p.G1528V 0.10 deleterious(0) benign(0.358) TCGA-FT-A61P-01 3 170744472 170744472 G A SLC2A2 5'UTR 0.06 TCGA-FT-A61P-01 3 195480082 195480082 C G MUC4 Silent p.L5116L 0.10 TCGA-FT-A61P-01 3 49849972 49849972 G A UBA7 Missense_Mutation p.S188F 0.11 tolerated(0.06) benign(0.013) TCGA-FT-A61P-01 3 49940823 49940823 T C MST1R Missense_Mutation p.I74V 0.10 tolerated(0.52) benign(0.019) TCGA-FT-A61P-01 3 50005469 50005469 A C RBM6 Missense_Mutation p.D204A 0.21 deleterious(0.03) benign(0.283) TCGA-FT-A61P-01 3 74385746 74385746 A C CNTN3 Silent p.T476T 0.12 TCGA-FT-A61P-01 3 9807722 9807722 G A OGG1 Missense_Mutation p.R393K 0.17 deleterious_low_confidence(0) benign(0.067) TCGA-FT-A61P-01 4 140281771 140281771 G A NAA15 Missense_Mutation p.E510K 0.13 deleterious(0) possibly_damaging(0.836) TCGA-FT-A61P-01 4 147561864 147561864 C T POU4F2 Silent p.I378I 0.13 TCGA-FT-A61P-01 4 156135621 156135621 C T NPY2R Missense_Mutation p.A177V 0.36 tolerated(0.11) possibly_damaging(0.897) TCGA-FT-A61P-01 4 169279274 169279274 C T DDX60L 3'UTR 0.09 TCGA-FT-A61P-01 4 174294599 174294599 G A SAP30 Missense_Mutation p.R125K 0.11 tolerated(1) benign(0.033) TCGA-FT-A61P-01 4 186380050 186380050 T C CCDC110 Missense_Mutation p.N564S 0.33 tolerated(0.11) benign(0.077) TCGA-FT-A61P-01 4 187201487 187201487 C T F11 Missense_Mutation p.R326C 0.09 deleterious(0) probably_damaging(0.999) TCGA-FT-A61P-01 4 38047451 38047451 G A TBC1D1 Missense_Mutation p.R519K 0.07 tolerated(0.19) benign(0.001) TCGA-FT-A61P-01 4 39201122 39201122 G A WDR19 Missense_Mutation p.C144Y 0.14 deleterious(0.04) possibly_damaging(0.648) TCGA-FT-A61P-01 4 40439968 40439968 G A RBM47 Silent p.L315L 0.07 TCGA-FT-A61P-01 4 47857090 47857090 T G NFXL1 Missense_Mutation p.K803Q 0.11 tolerated(0.07) probably_damaging(0.918) TCGA-FT-A61P-01 4 5141659 5141659 G A STK32B Missense_Mutation p.R27Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-FT-A61P-01 4 54325699 54325699 A G FIP1L1 3'UTR 0.16 TCGA-FT-A61P-01 4 667176 667176 G A ATP5I Missense_Mutation p.R36W 0.26 deleterious(0.03) benign(0.091) TCGA-FT-A61P-01 4 71634361 71634361 G C RUFY3 Missense_Mutation p.E227Q 0.25 deleterious(0) possibly_damaging(0.502) TCGA-FT-A61P-01 4 74365842 74365842 C T AFM Missense_Mutation p.A515V 0.10 tolerated(0.4) benign(0.065) TCGA-FT-A61P-01 4 96090504 96090504 G A UNC5C Silent p.L893L 0.09 TCGA-FT-A61P-01 5 129241309 129241309 G C CHSY3 Missense_Mutation p.D263H 0.11 deleterious(0) probably_damaging(1) TCGA-FT-A61P-01 5 140574147 140574147 G A PCDHB10 Silent p.P674P 0.15 TCGA-FT-A61P-01 5 176305281 176305281 C T UNC5A Silent p.L636L 0.23 TCGA-FT-A61P-01 5 22143087 22143087 G C CDH12 Intron 0.07 TCGA-FT-A61P-01 5 66462691 66462691 G C MAST4 Missense_Mutation p.G2562R 0.16 probably_damaging(0.949) TCGA-FT-A61P-01 5 80376017 80376017 T C RASGRF2 Missense_Mutation p.L322S 0.16 deleterious(0.02) probably_damaging(0.911) TCGA-FT-A61P-01 6 117631323 117631323 C T ROS1 Missense_Mutation p.G2119R 0.11 deleterious(0) probably_damaging(1) TCGA-FT-A61P-01 6 118790378 118790378 C G CEP85L Missense_Mutation p.R707P 0.09 tolerated(0.26) benign(0.346) TCGA-FT-A61P-01 6 133138189 133138189 G T RPS12 Missense_Mutation p.V109L 0.15 tolerated(0.05) benign(0.039) TCGA-FT-A61P-01 6 16328458 16328458 C T ATXN1 Silent p.E28E 0.06 TCGA-FT-A61P-01 6 166836798 166836798 C T RPS6KA2 Silent p.A571A 0.12 TCGA-FT-A61P-01 6 26123693 26123693 T G HIST1H2BC Intron 0.18 TCGA-FT-A61P-01 6 43012990 43012990 T C CUL7 Missense_Mutation p.R1089G 0.13 tolerated(0.33) benign(0.011) TCGA-FT-A61P-01 6 43017748 43017748 C A CUL7 Missense_Mutation p.D592Y 0.08 deleterious(0) probably_damaging(0.926) TCGA-FT-A61P-01 6 83075791 83075791 C T TPBG Silent p.L371L 0.15 TCGA-FT-A61P-01 7 140043314 140043314 C G SLC37A3 Silent p.A408A 0.29 TCGA-FT-A61P-01 7 27135134 27135134 C T HOXA1 Missense_Mutation p.G133E 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-FT-A61P-01 7 37355564 37355564 T A ELMO1 Nonsense_Mutation p.K27* 0.09 TCGA-FT-A61P-01 7 44104487 44104487 C T PGAM2 Missense_Mutation p.R180Q 0.28 tolerated(0.15) benign(0.081) TCGA-FT-A61P-01 7 77326172 77326172 T G RSBN1L Missense_Mutation p.L129R 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.883) TCGA-FT-A61P-01 7 87564454 87564454 C T ADAM22 Missense_Mutation p.H67Y 0.15 tolerated(0.42) benign(0.016) TCGA-FT-A61P-01 7 99627511 99627511 C T ZKSCAN1 Missense_Mutation p.P203L 0.17 tolerated(0.4) benign(0.045) TCGA-FT-A61P-01 8 113299452 113299452 C T CSMD3 Missense_Mutation p.D3058N 0.11 tolerated(0.1) possibly_damaging(0.512) TCGA-FT-A61P-01 8 145052106 145052106 G A PARP10 Silent p.H900H 0.08 TCGA-FT-A61P-01 8 146029031 146029031 G A ZNF517 Silent p.A13A 0.12 TCGA-FT-A61P-01 8 22880288 22880288 C T TNFRSF10B Missense_Mutation p.E407K 0.11 deleterious(0.01) possibly_damaging(0.652) TCGA-FT-A61P-01 8 41906679 41906701 CAAAACAACCTGTTGATTGAAAT - KAT6A 5'UTR 0.50 TCGA-FT-A61P-01 8 42162785 42162785 G A IKBKB Missense_Mutation p.E157K 0.10 tolerated(0.26) possibly_damaging(0.559) TCGA-FT-A61P-01 8 42179669 42179669 C G IKBKB Silent p.L612L 0.61 TCGA-FT-A61P-01 8 94827587 94827587 T C TMEM67 Missense_Mutation p.L940P 0.18 deleterious(0) probably_damaging(0.996) TCGA-FT-A61P-01 9 101540608 101540608 G A ANKS6 Silent p.D489D 0.21 TCGA-FT-A61P-01 9 130710371 130710371 G A FAM102A Missense_Mutation p.R199W 0.10 deleterious(0) probably_damaging(0.957) TCGA-FT-A61P-01 9 130854274 130854274 C T SLC25A25 Intron 0.23 TCGA-FT-A61P-01 9 139753685 139753685 G C MAMDC4 Missense_Mutation p.G1037R 0.12 tolerated(0.21) possibly_damaging(0.898) TCGA-FT-A61P-01 9 140911629 140911629 C G CACNA1B Intron 0.08 TCGA-FT-A61P-01 9 35736273 35736273 C T CREB3 Missense_Mutation p.S249F 0.07 tolerated(0.24) probably_damaging(0.948) TCGA-FT-A61P-01 9 72521072 72521072 C T C9orf135 3'UTR 0.23 TCGA-FT-A61P-01 9 73152209 73152209 G A TRPM3 Missense_Mutation p.R1262C 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-FT-A61P-01 9 79253201 79253201 T C PRUNE2 Missense_Mutation p.Y2911C 0.13 deleterious(0) probably_damaging(0.996) TCGA-FT-A61P-01 X 123196823 123196823 C G STAG2 Silent p.A570A 0.29 TCGA-FT-A61P-01 X 12516884 12516884 G A FRMPD4 Missense_Mutation p.A43T 0.08 tolerated(1) benign(0.001) TCGA-FT-A61P-01 X 151424261 151424261 G C GABRA3 Silent p.L180L 0.15 TCGA-FT-A61P-01 X 153033836 153033836 G A PLXNB3 Missense_Mutation p.G430R 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-FT-A61P-01 X 19013027 19013027 G C GPR64 Missense_Mutation p.H952Q 0.22 tolerated(0.08) possibly_damaging(0.734) TCGA-FT-A61P-01 X 32398642 32398642 T G DMD Missense_Mutation p.E1610D 0.09 benign(0.388) TCGA-FT-A61P-01 X 65415012 65415012 G A HEPH Missense_Mutation p.S535N 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-FT-A61P-01 Y 16941831 16941831 G A NLGN4Y Missense_Mutation p.D345N 0.26 deleterious(0) probably_damaging(0.991) TCGA-G2-A2EC-01 10 104156527 104156527 G A NFKB2 Missense_Mutation p.G64R 0.07 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EC-01 10 33469270 33469270 C T NRP1 Missense_Mutation p.E836K 0.41 tolerated(0.44) benign(0.001) TCGA-G2-A2EC-01 10 48388414 48388414 C T RBP3 Missense_Mutation p.E822K 0.10 tolerated(0.18) possibly_damaging(0.621) TCGA-G2-A2EC-01 10 5437320 5437320 G A TUBAL3 Silent p.I122I 0.38 TCGA-G2-A2EC-01 10 72496495 72496495 C T ADAMTS14 Silent p.F518F 0.44 TCGA-G2-A2EC-01 10 92672725 92672725 C A ANKRD1 Missense_Mutation p.K286N 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-G2-A2EC-01 11 118516477 118516477 G C PHLDB1 Missense_Mutation p.K1147N 0.30 deleterious(0) benign(0.347) TCGA-G2-A2EC-01 11 124482880 124482880 T C PANX3 Silent p.S62S 0.26 TCGA-G2-A2EC-01 11 2975819 2975819 C T NAP1L4 Missense_Mutation p.E325K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EC-01 11 4593489 4593489 G C C11orf40 Missense_Mutation p.S115C 0.31 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-G2-A2EC-01 11 49175904 49175904 G T FOLH1 Silent p.A588A 0.13 TCGA-G2-A2EC-01 11 55587651 55587651 C G OR5D18 Missense_Mutation p.F182L 0.27 tolerated(0.72) benign(0.002) TCGA-G2-A2EC-01 11 57080172 57080172 C G TNKS1BP1 Missense_Mutation p.E664Q 0.30 deleterious(0.05) probably_damaging(0.924) TCGA-G2-A2EC-01 11 57327878 57327878 G T UBE2L6 Missense_Mutation p.P19T 0.18 tolerated(0.54) probably_damaging(0.998) TCGA-G2-A2EC-01 11 62572840 62572840 G A NXF1 5'UTR 0.14 TCGA-G2-A2EC-01 11 63970354 63970354 G A STIP1 Missense_Mutation p.E418K 0.24 deleterious(0.03) possibly_damaging(0.775) TCGA-G2-A2EC-01 11 64022383 64022383 G A PLCB3 Missense_Mutation p.R87Q 0.09 deleterious(0.03) benign(0.254) TCGA-G2-A2EC-01 11 67257650 67257650 G A AIP Missense_Mutation p.D204N 0.31 tolerated(0.18) benign(0.013) TCGA-G2-A2EC-01 11 69588000 69588000 A G FGF4 3'UTR 0.21 TCGA-G2-A2EC-01 11 70319408 70319408 G A SHANK2 Missense_Mutation p.R1707C 0.10 deleterious(0) possibly_damaging(0.689) TCGA-G2-A2EC-01 11 75442218 75442218 G A MOGAT2 Missense_Mutation p.E298K 0.30 tolerated(0.33) benign(0.005) TCGA-G2-A2EC-01 11 93911662 93911662 A G PANX1 Missense_Mutation p.Y150C 0.21 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 12 101510519 101510519 G C ANO4 Missense_Mutation p.R803P 0.25 tolerated(0.07) benign(0.403) TCGA-G2-A2EC-01 12 102060550 102060550 T C MYBPC1 Silent p.N770N 0.16 TCGA-G2-A2EC-01 12 110825668 110825668 C G ANAPC7 Missense_Mutation p.E218Q 0.39 deleterious(0.01) possibly_damaging(0.462) TCGA-G2-A2EC-01 12 124345622 124345622 C T DNAH10 Silent p.Y2153Y 0.19 TCGA-G2-A2EC-01 12 15131027 15131027 G T PDE6H Missense_Mutation p.K27N 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G2-A2EC-01 12 21391927 21391927 G T SLCO1B1 Missense_Mutation p.G627V 0.18 deleterious(0) probably_damaging(0.948) TCGA-G2-A2EC-01 12 25302597 25302597 G C CASC1 Missense_Mutation p.L184V 0.20 tolerated(0.5) benign(0.373) TCGA-G2-A2EC-01 12 56720730 56720730 G - PAN2 Frame_Shift_Del p.C312Vfs*15 0.21 TCGA-G2-A2EC-01 12 6691413 6691413 C G CHD4 Missense_Mutation p.E1469Q 0.14 deleterious(0) probably_damaging(0.913) TCGA-G2-A2EC-01 12 88900821 88900821 C G KITLG Missense_Mutation p.G233A 0.10 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 13 39263186 39263186 C A FREM2 Missense_Mutation p.L569M 0.24 deleterious(0.01) possibly_damaging(0.901) TCGA-G2-A2EC-01 14 102898165 102898165 G C TECPR2 Missense_Mutation p.E373Q 0.25 tolerated(0.06) benign(0.082) TCGA-G2-A2EC-01 14 104177481 104177481 G C XRCC3 5'UTR 0.36 TCGA-G2-A2EC-01 14 35592881 35592881 A G KIAA0391 Missense_Mutation p.I144V 0.12 tolerated(0.19) possibly_damaging(0.658) TCGA-G2-A2EC-01 14 64625483 64625483 G A SYNE2 Silent p.E5311E 0.32 TCGA-G2-A2EC-01 14 81744349 81744349 C T STON2 Missense_Mutation p.E436K 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-G2-A2EC-01 15 21071330 21071330 G A POTEB2 Missense_Mutation p.P94L 0.28 deleterious(0) probably_damaging(0.992) TCGA-G2-A2EC-01 15 33192230 33192230 C T FMN1 Missense_Mutation p.D979N 0.26 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 15 40235658 40235658 A G EIF2AK4 Missense_Mutation p.E111G 0.24 tolerated(0.18) benign(0.246) TCGA-G2-A2EC-01 15 40396430 40396430 C T BMF Missense_Mutation p.R135Q 0.22 tolerated(0.39) benign(0.255) TCGA-G2-A2EC-01 15 42042440 42042440 C G MGA Nonsense_Mutation p.S2212* 0.32 TCGA-G2-A2EC-01 15 43896298 43896298 C T STRC Nonsense_Mutation p.W1424* 0.24 TCGA-G2-A2EC-01 15 45396470 45396470 C T DUOX2 Missense_Mutation p.E810K 0.44 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EC-01 15 81625286 81625286 C T TMC3 Missense_Mutation p.R926Q 0.32 tolerated_low_confidence(0.22) benign(0.033) TCGA-G2-A2EC-01 16 1604935 1604952 TGCATGGCCCCCCGGGTG - TMEM204 In_Frame_Del p.C197_V202del 0.21 TCGA-G2-A2EC-01 16 24578570 24578570 C T RBBP6 Missense_Mutation p.P566S 0.19 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-G2-A2EC-01 16 27246536 27246536 C T NSMCE1 Missense_Mutation p.G74E 0.22 deleterious(0) probably_damaging(0.993) TCGA-G2-A2EC-01 16 29998793 29998793 G A TAOK2 Missense_Mutation p.G1067D 0.17 deleterious_low_confidence(0.01) benign(0.389) TCGA-G2-A2EC-01 16 30583534 30583534 G A ZNF688 5'UTR 0.29 TCGA-G2-A2EC-01 16 30997087 30997087 C T HSD3B7 Silent p.L36L 0.45 TCGA-G2-A2EC-01 16 56901090 56901090 G A SLC12A3 Missense_Mutation p.E131K 0.27 tolerated(0.98) benign(0.001) TCGA-G2-A2EC-01 16 58438619 58438619 G C GINS3 Missense_Mutation p.D252H 0.26 tolerated(0.1) benign(0.021) TCGA-G2-A2EC-01 16 67696467 67696467 C T PARD6A Silent p.L320L 0.33 TCGA-G2-A2EC-01 16 68264333 68264333 C G ESRP2 Missense_Mutation p.A675P 0.29 deleterious(0.02) possibly_damaging(0.686) TCGA-G2-A2EC-01 16 708543 708543 G A WDR90 Missense_Mutation p.E929K 0.30 tolerated(0.91) benign(0.007) TCGA-G2-A2EC-01 17 26940312 26940312 C G SGK494 Missense_Mutation p.D126H 0.37 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EC-01 17 26940461 26940461 C T RP11-192H23.4 Silent p.L107L 0.32 TCGA-G2-A2EC-01 17 26942708 26942708 C A KIAA0100 Missense_Mutation p.D2167Y 0.22 deleterious(0) probably_damaging(0.993) TCGA-G2-A2EC-01 17 26942717 26942717 C T KIAA0100 Missense_Mutation p.V2164I 0.27 tolerated(0.14) possibly_damaging(0.549) TCGA-G2-A2EC-01 17 26943203 26943203 C T KIAA0100 Missense_Mutation p.D2101N 0.29 deleterious(0) probably_damaging(0.982) TCGA-G2-A2EC-01 17 26945827 26945827 C G KIAA0100 Missense_Mutation p.Q1935H 0.31 deleterious(0.01) possibly_damaging(0.489) TCGA-G2-A2EC-01 17 27008291 27008291 C G SUPT6H Nonsense_Mutation p.S456* 0.32 TCGA-G2-A2EC-01 17 27895814 27895814 T C TP53I13 Missense_Mutation p.L13P 0.42 deleterious_low_confidence(0) unknown(0) TCGA-G2-A2EC-01 17 33966732 33966732 G A AP2B1 Missense_Mutation p.E464K 0.23 deleterious(0) benign(0.06) TCGA-G2-A2EC-01 17 35310257 35310257 G A AATF Missense_Mutation p.E119K 0.19 tolerated(0.15) benign(0.006) TCGA-G2-A2EC-01 17 37343111 37343111 G A CACNB1 Silent p.P162P 0.36 TCGA-G2-A2EC-01 17 37431242 37431242 G C FBXL20 Missense_Mutation p.Q270E 0.17 tolerated(0.65) benign(0.012) TCGA-G2-A2EC-01 17 37618889 37618889 G A CDK12 Missense_Mutation p.E189K 0.22 unknown(0) TCGA-G2-A2EC-01 17 40705943 40705943 C G HSD17B1 Intron 0.41 TCGA-G2-A2EC-01 17 40717318 40717318 C G COASY Missense_Mutation p.A488G 0.05 tolerated(0.09) possibly_damaging(0.847) TCGA-G2-A2EC-01 17 41719146 41719146 C T MEOX1 3'UTR 0.36 TCGA-G2-A2EC-01 17 42463435 42463435 A G ITGA2B Missense_Mutation p.F85L 0.23 deleterious(0) possibly_damaging(0.813) TCGA-G2-A2EC-01 17 45012558 45012558 G C GOSR2 Intron 0.28 TCGA-G2-A2EC-01 17 45012562 45012562 G A GOSR2 Intron 0.28 TCGA-G2-A2EC-01 17 45387520 45387520 T C ITGB3 Missense_Mutation p.Y773H 0.29 deleterious(0.03) benign(0.362) TCGA-G2-A2EC-01 17 45727754 45727754 C G KPNB1 Missense_Mutation p.R15G 0.24 tolerated(0.16) benign(0.018) TCGA-G2-A2EC-01 17 45901691 45901691 G C MRPL10 Silent p.L232L 0.25 TCGA-G2-A2EC-01 17 54526504 54526504 G A ANKFN1 Silent p.L391L 0.27 TCGA-G2-A2EC-01 17 59067473 59067473 A G BCAS3 Missense_Mutation p.M455V 0.30 tolerated(0.13) benign(0.009) TCGA-G2-A2EC-01 17 62864655 62864655 C G LRRC37A3 Splice_Site p.X993_splice 0.20 TCGA-G2-A2EC-01 17 73231679 73231679 G A NUP85 Missense_Mutation p.D626N 0.38 tolerated(0.1) possibly_damaging(0.484) TCGA-G2-A2EC-01 18 21395492 21395492 G C LAMA3 Missense_Mutation p.D668H 0.20 probably_damaging(0.971) TCGA-G2-A2EC-01 18 21396406 21396406 G T LAMA3 Missense_Mutation p.G701V 0.27 probably_damaging(1) TCGA-G2-A2EC-01 18 346369 346369 G A COLEC12 Missense_Mutation p.S418L 0.11 deleterious(0) possibly_damaging(0.879) TCGA-G2-A2EC-01 18 43205653 43205653 C G SLC14A2 Silent p.L52L 0.34 TCGA-G2-A2EC-01 19 10204373 10204373 T C ANGPTL6 Missense_Mutation p.Y316C 0.15 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 19 10395527 10395527 C G ICAM1 Missense_Mutation p.P417A 0.27 deleterious(0.03) benign(0.014) TCGA-G2-A2EC-01 19 10395565 10395565 C G ICAM1 Silent p.L429L 0.33 TCGA-G2-A2EC-01 19 11488763 11488763 C T EPOR Missense_Mutation p.G475E 0.28 tolerated(0.36) benign(0.034) TCGA-G2-A2EC-01 19 16614092 16614092 T G C19orf44 Missense_Mutation p.L326V 0.27 tolerated(0.62) benign(0.015) TCGA-G2-A2EC-01 19 17476312 17476312 G A PLVAP Missense_Mutation p.A321V 0.11 tolerated(0.08) benign(0.212) TCGA-G2-A2EC-01 19 19313883 19313883 G C NR2C2AP 5'UTR 0.23 TCGA-G2-A2EC-01 19 22154750 22154750 T C ZNF208 Missense_Mutation p.Y1029C 0.34 deleterious(0.05) benign(0.231) TCGA-G2-A2EC-01 19 39106878 39106878 G A MAP4K1 Silent p.C90C 0.27 TCGA-G2-A2EC-01 19 43099039 43099039 C G CEACAM8 5'UTR 0.18 TCGA-G2-A2EC-01 19 43773656 43773656 C G PSG9 5'UTR 0.32 TCGA-G2-A2EC-01 19 47572355 47572355 C T ZC3H4 Missense_Mutation p.E798K 0.29 unknown(0) TCGA-G2-A2EC-01 19 56953098 56953098 C T ZNF667 Silent p.K422K 0.36 TCGA-G2-A2EC-01 19 58564970 58564970 C T ZSCAN1 Missense_Mutation p.R260C 0.12 tolerated(0.07) benign(0.002) TCGA-G2-A2EC-01 19 9528554 9528554 G A ZNF266 Missense_Mutation p.S22F 0.32 tolerated(0.11) possibly_damaging(0.452) TCGA-G2-A2EC-01 19 9676748 9676748 T A ZNF121 Missense_Mutation p.K347N 0.30 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 1 110029160 110029160 G A ATXN7L2 Missense_Mutation p.D76N 0.34 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EC-01 1 110029717 110029717 G C ATXN7L2 Silent p.V129V 0.50 TCGA-G2-A2EC-01 1 11249464 11249464 C G ANGPTL7 5'UTR 0.67 TCGA-G2-A2EC-01 1 11854051 11854051 G A MTHFR Silent p.T481T 0.29 TCGA-G2-A2EC-01 1 120510124 120510124 G C NOTCH2 Nonsense_Mutation p.S462* 0.14 TCGA-G2-A2EC-01 1 1233261 1233261 C T ACAP3 Missense_Mutation p.A357T 0.41 deleterious(0) possibly_damaging(0.758) TCGA-G2-A2EC-01 1 145438899 145438900 - T TXNIP Frame_Shift_Ins p.E34Gfs*4 0.23 TCGA-G2-A2EC-01 1 155290718 155290718 C T RUSC1 5'UTR 0.21 TCGA-G2-A2EC-01 1 159825827 159825827 G A VSIG8 Silent p.L273L 0.53 TCGA-G2-A2EC-01 1 179013136 179013136 C T FAM20B Silent p.L52L 0.06 TCGA-G2-A2EC-01 1 196697596 196697596 G T CFH Missense_Mutation p.G786V 0.25 tolerated(0.08) benign(0.09) TCGA-G2-A2EC-01 1 200143410 200143410 G A NR5A2 3'UTR 0.32 TCGA-G2-A2EC-01 1 207850763 207850763 T A CR1L Missense_Mutation p.F43I 0.11 deleterious(0) probably_damaging(0.989) TCGA-G2-A2EC-01 1 211192470 211192470 G A KCNH1 Silent p.F229F 0.32 TCGA-G2-A2EC-01 1 21804591 21804591 C G NBPF3 Intron 0.32 TCGA-G2-A2EC-01 1 230903408 230903408 C T CAPN9 Silent p.L220L 0.18 TCGA-G2-A2EC-01 1 2327262 2327262 C T RER1 Silent p.V11V 0.17 TCGA-G2-A2EC-01 1 27623546 27623546 G C WDTC1 Missense_Mutation p.Q318H 0.12 deleterious(0.04) possibly_damaging(0.563) TCGA-G2-A2EC-01 1 53362163 53362163 A G ECHDC2 3'UTR 0.17 TCGA-G2-A2EC-01 1 55638085 55638085 G C USP24 Missense_Mutation p.P223A 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-G2-A2EC-01 1 57351743 57351743 C T C8A Silent p.F333F 0.37 TCGA-G2-A2EC-01 20 30804435 30804435 C T POFUT1 Silent p.F151F 0.21 TCGA-G2-A2EC-01 20 3102035 3102035 G A UBOX5 Missense_Mutation p.S417L 0.12 deleterious(0.01) probably_damaging(0.922) TCGA-G2-A2EC-01 20 39990047 39990047 C A EMILIN3 Missense_Mutation p.R721I 0.48 tolerated(0.12) benign(0.081) TCGA-G2-A2EC-01 20 43246949 43246949 C G PKIG Missense_Mutation p.P59A 0.15 tolerated(0.23) benign(0.002) TCGA-G2-A2EC-01 20 44469809 44469809 G C SNX21 Missense_Mutation p.E327Q 0.41 tolerated(1) benign(0.026) TCGA-G2-A2EC-01 20 48252757 48252757 C G B4GALT5 3'UTR 0.32 TCGA-G2-A2EC-01 20 48522407 48522407 G A SPATA2 Nonsense_Mutation p.Q438* 0.21 TCGA-G2-A2EC-01 20 61511415 61511415 G A DIDO1 Nonsense_Mutation p.Q1965* 0.19 TCGA-G2-A2EC-01 20 61511882 61511882 G T DIDO1 Missense_Mutation p.S1809Y 0.17 probably_damaging(0.999) TCGA-G2-A2EC-01 20 61512446 61512446 G A DIDO1 Missense_Mutation p.S1621L 0.43 benign(0.005) TCGA-G2-A2EC-01 20 61512978 61512978 G A DIDO1 Silent p.L1444L 0.22 TCGA-G2-A2EC-01 22 22843754 22843754 G A ZNF280B 5'UTR 0.32 TCGA-G2-A2EC-01 22 32174116 32174116 G A DEPDC5 Missense_Mutation p.E149K 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-G2-A2EC-01 22 42970117 42970117 G C SERHL2 3'UTR 0.25 TCGA-G2-A2EC-01 2 128393891 128393891 G C MYO7B Missense_Mutation p.E2013Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EC-01 2 141283479 141283479 G T LRP1B Missense_Mutation p.L2654M 0.24 possibly_damaging(0.887) TCGA-G2-A2EC-01 2 168114800 168114800 G A XIRP2 3'UTR 0.30 TCGA-G2-A2EC-01 2 179415741 179415741 C A TTN Missense_Mutation p.S30506I 0.20 TCGA-G2-A2EC-01 2 179464145 179464145 A T TTN Missense_Mutation p.I18792K 0.24 TCGA-G2-A2EC-01 2 186673576 186673576 G C FSIP2 Missense_Mutation p.E6604Q 0.26 possibly_damaging(0.707) TCGA-G2-A2EC-01 2 187713754 187713754 C G ZSWIM2 Missense_Mutation p.R35P 0.29 deleterious(0) possibly_damaging(0.854) TCGA-G2-A2EC-01 2 203653802 203653802 C G ICA1L Missense_Mutation p.D332H 0.26 deleterious(0) possibly_damaging(0.868) TCGA-G2-A2EC-01 2 20901362 20901362 C T C2orf43 Missense_Mutation p.D252N 0.25 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EC-01 2 20901369 20901369 C T C2orf43 Silent p.V249V 0.25 TCGA-G2-A2EC-01 2 223423425 223423425 C G SGPP2 Silent p.L336L 0.20 TCGA-G2-A2EC-01 2 224463700 224463700 C G SCG2 Missense_Mutation p.E101Q 0.33 tolerated(0.19) possibly_damaging(0.902) TCGA-G2-A2EC-01 2 228012211 228012211 C T COL4A4 5'UTR 0.15 TCGA-G2-A2EC-01 2 231974086 231974101 AGTCTCTATCCCTTTA - HTR2B Frame_Shift_Del p.I192Mfs*13 0.23 TCGA-G2-A2EC-01 2 24930108 24930108 C G NCOA1 Nonsense_Mutation p.S590* 0.13 TCGA-G2-A2EC-01 2 62449660 62449673 TCACGTCGGTGGTT - B3GNT2 Frame_Shift_Del p.V102Dfs*4 0.09 TCGA-G2-A2EC-01 2 97757424 97757424 C T FAHD2B Missense_Mutation p.R7K 0.27 deleterious(0.05) benign(0.002) TCGA-G2-A2EC-01 3 100467340 100467340 C T TFG Nonsense_Mutation p.Q390* 0.18 TCGA-G2-A2EC-01 3 105459361 105459361 C G CBLB Silent p.L320L 0.28 TCGA-G2-A2EC-01 3 121228970 121228970 G A POLQ Nonsense_Mutation p.Q578* 0.26 TCGA-G2-A2EC-01 3 123348340 123348340 G A MYLK Silent p.L1699L 0.25 TCGA-G2-A2EC-01 3 138351933 138351933 C G FAIM 3'UTR 0.28 TCGA-G2-A2EC-01 3 138664398 138664398 T A FOXL2 3'UTR 0.25 TCGA-G2-A2EC-01 3 155199036 155199036 C T PLCH1 Silent p.K1601K 0.31 TCGA-G2-A2EC-01 3 155199541 155199541 G C PLCH1 Missense_Mutation p.S1433C 0.36 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-G2-A2EC-01 3 16254202 16254202 G A GALNT15 Missense_Mutation p.E442K 0.20 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EC-01 3 179294032 179294032 G A ACTL6A Silent p.L168L 0.33 TCGA-G2-A2EC-01 3 179294656 179294656 G C ACTL6A Missense_Mutation p.E241D 0.31 tolerated(0.37) benign(0.012) TCGA-G2-A2EC-01 3 186917517 186917517 G A RTP1 Missense_Mutation p.E151K 0.13 tolerated(0.23) possibly_damaging(0.642) TCGA-G2-A2EC-01 3 37033451 37033451 G C EPM2AIP1 Nonsense_Mutation p.S373* 0.31 TCGA-G2-A2EC-01 3 38065849 38065849 C T PLCD1 Missense_Mutation p.A26T 0.16 tolerated(0.49) benign(0.003) TCGA-G2-A2EC-01 3 42680225 42680225 G A NKTR Missense_Mutation p.R1010Q 0.21 tolerated_low_confidence(0.14) probably_damaging(0.953) TCGA-G2-A2EC-01 3 44497015 44497015 G T ZNF445 Silent p.A9A 0.15 TCGA-G2-A2EC-01 3 47951269 47951269 C T MAP4 Intron 0.24 TCGA-G2-A2EC-01 3 49308828 49308828 C G C3orf62 Missense_Mutation p.E197Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EC-01 3 49756821 49756821 G T AMIGO3 Missense_Mutation p.F26L 0.25 tolerated_low_confidence(0.39) benign(0) TCGA-G2-A2EC-01 3 51317569 51317569 C T DOCK3 Silent p.L952L 0.10 TCGA-G2-A2EC-01 3 52398976 52398976 G A DNAH1 Missense_Mutation p.G1820D 0.19 possibly_damaging(0.473) TCGA-G2-A2EC-01 3 9146379 9146379 G A SRGAP3 Silent p.I136I 0.29 TCGA-G2-A2EC-01 4 108999479 108999479 G A LEF1 Missense_Mutation p.P302L 0.30 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 4 109084785 109084785 G C LEF1 Missense_Mutation p.P118R 0.23 deleterious(0) possibly_damaging(0.756) TCGA-G2-A2EC-01 4 16900121 16900121 T C LDB2 5'UTR 0.23 TCGA-G2-A2EC-01 4 186083881 186083881 G C KIAA1430 3'UTR 0.25 TCGA-G2-A2EC-01 4 8214432 8214432 G C SH3TC1 Silent p.L84L 0.20 TCGA-G2-A2EC-01 4 83858433 83858433 C G LIN54 Silent p.S517S 0.12 TCGA-G2-A2EC-01 4 90170794 90170794 C T GPRIN3 Missense_Mutation p.M156I 0.30 tolerated(0.16) benign(0) TCGA-G2-A2EC-01 5 108290634 108290634 G A FER Splice_Site p.X511_splice 0.34 TCGA-G2-A2EC-01 5 11117566 11117566 C A CTNND2 Missense_Mutation p.S758I 0.24 deleterious(0) possibly_damaging(0.632) TCGA-G2-A2EC-01 5 1219057 1219057 G A SLC6A19 Missense_Mutation p.E405K 0.32 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 5 140432632 140432632 A G PCDHB1 Missense_Mutation p.Q526R 0.23 tolerated(0.8) possibly_damaging(0.452) TCGA-G2-A2EC-01 5 140801665 140801665 G A PCDHGA11 Missense_Mutation p.E291K 0.29 tolerated_low_confidence(0.18) benign(0.041) TCGA-G2-A2EC-01 5 140960344 140960344 G C DIAPH1 Missense_Mutation p.S264C 0.19 unknown(0) TCGA-G2-A2EC-01 5 156741454 156741454 G A CYFIP2 Missense_Mutation p.A379T 0.11 tolerated(0.65) benign(0.025) TCGA-G2-A2EC-01 5 167933745 167933745 A G RARS Missense_Mutation p.I419V 0.42 tolerated(0.97) benign(0.007) TCGA-G2-A2EC-01 5 171773245 171773245 C T SH3PXD2B Silent p.P361P 0.32 TCGA-G2-A2EC-01 5 172662104 172662104 C G NKX2-5 5'UTR 0.56 TCGA-G2-A2EC-01 5 179264671 179264700 TGAAGAGACCTTGGCTGCTCACTGTCCACA - C5orf45 In_Frame_Del p.H241_L250del 0.35 TCGA-G2-A2EC-01 5 33588796 33588796 C T ADAMTS12 Missense_Mutation p.D925N 0.27 deleterious(0.02) possibly_damaging(0.809) TCGA-G2-A2EC-01 5 38955780 38955780 C T RICTOR Silent p.L842L 0.17 TCGA-G2-A2EC-01 5 58270810 58270810 T C PDE4D Missense_Mutation p.N704S 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G2-A2EC-01 6 155153375 155153375 C G SCAF8 Missense_Mutation p.P888A 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.778) TCGA-G2-A2EC-01 6 155153393 155153393 C G SCAF8 Missense_Mutation p.P894A 0.41 tolerated_low_confidence(0.19) benign(0.003) TCGA-G2-A2EC-01 6 160514928 160514928 G A IGF2R Intron 0.31 TCGA-G2-A2EC-01 6 18122075 18122075 C T NHLRC1 Missense_Mutation p.E255K 0.28 tolerated(0.17) benign(0.055) TCGA-G2-A2EC-01 6 26158850 26158850 G C HIST1H2BD Intron 0.31 TCGA-G2-A2EC-01 6 28542657 28542657 C G SCAND3 Missense_Mutation p.E609Q 0.34 deleterious_low_confidence(0) benign(0.193) TCGA-G2-A2EC-01 6 32014154 32014154 G T TNXB 5'Flank 0.40 TCGA-G2-A2EC-01 6 32014155 32014155 G T TNXB 5'Flank 0.40 TCGA-G2-A2EC-01 6 35543683 35543683 C A FKBP5 Nonsense_Mutation p.E435* 0.22 TCGA-G2-A2EC-01 6 40360393 40360393 G A LRFN2 Silent p.L553L 0.31 TCGA-G2-A2EC-01 6 41168889 41168889 G A TREML2 5'UTR 0.22 TCGA-G2-A2EC-01 6 42224510 42224510 C T TRERF1 Missense_Mutation p.E846K 0.25 deleterious(0) benign(0.292) TCGA-G2-A2EC-01 6 51768474 51768474 G A PKHD1 Missense_Mutation p.S2306F 0.25 tolerated(0.06) benign(0.33) TCGA-G2-A2EC-01 6 90642373 90642373 G A BACH2 Silent p.C760C 0.26 TCGA-G2-A2EC-01 7 138711457 138711457 G A ZC3HAV1L Missense_Mutation p.P295S 0.05 tolerated_low_confidence(0.18) benign(0.002) TCGA-G2-A2EC-01 7 142481228 142481228 G A PRSS3P2 RNA 0.14 TCGA-G2-A2EC-01 7 148487405 148487405 G A CUL1 Missense_Mutation p.E560K 0.30 tolerated(0.75) possibly_damaging(0.884) TCGA-G2-A2EC-01 7 150935275 150935275 G A CHPF2 Missense_Mutation p.M609I 0.23 deleterious(0) probably_damaging(0.928) TCGA-G2-A2EC-01 7 38402529 38402529 C G TRGV2 Missense_Mutation p.R97T 0.30 tolerated(0.25) benign(0.008) TCGA-G2-A2EC-01 7 42005908 42005908 G A GLI3 Silent p.L921L 0.25 TCGA-G2-A2EC-01 7 65553815 65553815 C T ASL Missense_Mutation p.S247L 0.17 deleterious(0) possibly_damaging(0.746) TCGA-G2-A2EC-01 7 72849364 72849364 G A FZD9 Missense_Mutation p.G343R 0.16 deleterious(0) probably_damaging(0.958) TCGA-G2-A2EC-01 7 73771712 73771712 G A CLIP2 Missense_Mutation p.E374K 0.40 deleterious(0.02) probably_damaging(0.916) TCGA-G2-A2EC-01 7 73811473 73811473 G C CLIP2 Silent p.L930L 0.28 TCGA-G2-A2EC-01 7 7612191 7612191 C G MIOS Missense_Mutation p.H29D 0.24 deleterious(0.02) benign(0.012) TCGA-G2-A2EC-01 8 101540176 101540176 C G ANKRD46 Missense_Mutation p.D123H 0.24 deleterious(0) possibly_damaging(0.861) TCGA-G2-A2EC-01 8 113358422 113358422 A G CSMD3 Missense_Mutation p.S2116P 0.27 tolerated(0.08) possibly_damaging(0.762) TCGA-G2-A2EC-01 8 27507313 27507313 G C SCARA3 Missense_Mutation p.Q34H 0.32 tolerated(0.12) possibly_damaging(0.641) TCGA-G2-A2EC-01 8 3000065 3000065 T C CSMD1 Missense_Mutation p.S2055G 0.14 probably_damaging(0.995) TCGA-G2-A2EC-01 8 30890034 30890034 C T PURG Missense_Mutation p.E89K 0.36 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EC-01 8 37791899 37791899 T A GOT1L1 Missense_Mutation p.E393V 0.34 deleterious(0.02) possibly_damaging(0.678) TCGA-G2-A2EC-01 8 43197470 43197470 C T POTEA Intron 0.38 TCGA-G2-A2EC-01 8 53853373 53853373 C T NPBWR1 Silent p.L302L 0.34 TCGA-G2-A2EC-01 9 125316096 125316096 C A OR1N2 Silent p.I216I 0.38 TCGA-G2-A2EC-01 9 127996161 127996161 G A RABEPK Missense_Mutation p.E341K 0.33 tolerated(0.12) benign(0.005) TCGA-G2-A2EC-01 9 127996208 127996208 G A RABEPK Missense_Mutation p.M356I 0.30 deleterious(0.02) benign(0.188) TCGA-G2-A2EC-01 9 127996215 127996215 G A RABEPK Missense_Mutation p.E359K 0.29 tolerated(0.13) benign(0.188) TCGA-G2-A2EC-01 9 131367428 131367429 GA - SPTAN1 Frame_Shift_Del p.R1280Gfs*7 0.27 TCGA-G2-A2EC-01 9 131870096 131870096 G C CRAT Missense_Mutation p.N96K 0.42 deleterious(0) probably_damaging(1) TCGA-G2-A2EC-01 9 34611268 34611268 G A RPP25L Missense_Mutation p.S9F 0.25 tolerated(0.13) possibly_damaging(0.648) TCGA-G2-A2EC-01 X 102754791 102754791 C T RAB40A 3'UTR 0.13 TCGA-G2-A2EC-01 X 120181754 120181754 C A GLUD2 Silent p.G72G 0.28 TCGA-G2-A2EC-01 X 23398359 23398359 G A PTCHD1 Missense_Mutation p.V335I 0.11 tolerated(0.5) benign(0.006) TCGA-G2-A2EC-01 X 47044531 47044531 C A RBM10 Silent p.I676I 0.33 TCGA-G2-A2EC-01 X 47485822 47485822 C T CFP Missense_Mutation p.R346H 0.34 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EC-01 X 53436094 53436094 C A SMC1A Nonsense_Mutation p.E482* 0.25 TCGA-G2-A2EC-01 X 70470474 70470474 G C ZMYM3 Nonsense_Mutation p.S294* 0.17 TCGA-G2-A2EF-01 10 101992894 101992894 G A CWF19L1 3'UTR 0.24 TCGA-G2-A2EF-01 10 102249108 102249108 C T SEC31B Missense_Mutation p.M1024I 0.35 deleterious(0.01) benign(0.094) TCGA-G2-A2EF-01 10 102307915 102307915 C T HIF1AN 3'UTR 0.16 TCGA-G2-A2EF-01 10 11797603 11797603 G C ECHDC3 Missense_Mutation p.R196T 0.48 deleterious(0) possibly_damaging(0.89) TCGA-G2-A2EF-01 10 127464241 127464241 G C MMP21 Silent p.L50L 0.48 TCGA-G2-A2EF-01 10 129224163 129224163 G A DOCK1 Missense_Mutation p.R1580K 0.16 tolerated(0.32) benign(0.22) TCGA-G2-A2EF-01 10 13251199 13251199 T C MCM10 Intron 0.24 TCGA-G2-A2EF-01 10 133786615 133786615 G A BNIP3 Missense_Mutation p.R69C 0.24 tolerated(0.06) benign(0.141) TCGA-G2-A2EF-01 10 14939477 14939477 G A SUV39H2 Silent p.K270K 0.25 TCGA-G2-A2EF-01 10 15174885 15174885 C G NMT2 Missense_Mutation p.R217T 0.21 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 10 16859091 16859091 G A RSU1 5'UTR 0.32 TCGA-G2-A2EF-01 10 5955750 5955750 A T FBXO18 Missense_Mutation p.N469Y 0.06 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 10 6258137 6258137 G T PFKFB3 Nonsense_Mutation p.E117* 0.45 TCGA-G2-A2EF-01 10 68686706 68686706 G A LRRTM3 Missense_Mutation p.G11E 0.31 deleterious(0.01) probably_damaging(0.96) TCGA-G2-A2EF-01 10 79740028 79740028 C A POLR3A Nonsense_Mutation p.E1299* 0.38 TCGA-G2-A2EF-01 10 79741314 79741314 C T POLR3A Missense_Mutation p.E1255K 0.43 tolerated(0.37) benign(0.055) TCGA-G2-A2EF-01 11 118948238 118948238 G A VPS11 Missense_Mutation p.D484N 0.71 tolerated(0.06) possibly_damaging(0.453) TCGA-G2-A2EF-01 11 123848240 123848240 A C OR10S1 Silent p.A53A 0.44 TCGA-G2-A2EF-01 11 18956501 18956501 C G MRGPRX1 5'UTR 0.22 TCGA-G2-A2EF-01 11 20181520 20181520 G A DBX1 Silent p.S117S 0.16 TCGA-G2-A2EF-01 11 22759311 22759311 C G GAS2 Missense_Mutation p.A157G 0.18 deleterious(0) benign(0.378) TCGA-G2-A2EF-01 11 3249790 3249790 G A MRGPRE Silent p.I79I 0.68 TCGA-G2-A2EF-01 11 3687403 3687403 G A CHRNA10 Silent p.F429F 0.71 TCGA-G2-A2EF-01 11 4388815 4388815 G C OR52B4 Missense_Mutation p.H237Q 0.09 tolerated(0.56) benign(0.021) TCGA-G2-A2EF-01 11 47183188 47183188 G A C11orf49 Silent p.%3D 0.72 TCGA-G2-A2EF-01 11 5373369 5373369 T A OR51B6 Missense_Mutation p.I211N 0.62 deleterious(0.01) possibly_damaging(0.595) TCGA-G2-A2EF-01 11 55579623 55579623 G A OR5L1 Silent p.K227K 0.24 TCGA-G2-A2EF-01 11 55658689 55658689 G C TRIM51 Missense_Mutation p.D314H 0.62 tolerated(0.05) benign(0.021) TCGA-G2-A2EF-01 11 66618514 66618514 G C PC Missense_Mutation p.I740M 0.76 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EF-01 11 77921098 77921098 G A USP35 Missense_Mutation p.E733K 0.62 tolerated(0.82) benign(0.009) TCGA-G2-A2EF-01 11 89106617 89106617 A G NOX4 Missense_Mutation p.I373T 0.70 deleterious(0.01) possibly_damaging(0.551) TCGA-G2-A2EF-01 11 92539552 92539552 G A FAT3 Missense_Mutation p.E3040K 0.62 probably_damaging(0.999) TCGA-G2-A2EF-01 12 101017394 101017394 C T GAS2L3 Nonsense_Mutation p.Q271* 0.55 TCGA-G2-A2EF-01 12 105570747 105570747 C G APPL2 Missense_Mutation p.K579N 0.47 tolerated(0.28) benign(0.036) TCGA-G2-A2EF-01 12 109697942 109697942 G A ACACB Intron 0.15 TCGA-G2-A2EF-01 12 110024578 110024578 T C MVK Silent p.H217H 0.05 TCGA-G2-A2EF-01 12 121454205 121454205 G C C12orf43 Missense_Mutation p.R25G 0.06 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EF-01 12 121867872 121867872 G C KDM2B 3'UTR 0.18 TCGA-G2-A2EF-01 12 121867944 121867944 G A KDM2B 3'UTR 0.19 TCGA-G2-A2EF-01 12 123380496 123380496 C T VPS37B Intron 0.13 TCGA-G2-A2EF-01 12 132403850 132403850 G A ULK1 Missense_Mutation p.E869K 0.31 tolerated(0.09) benign(0.174) TCGA-G2-A2EF-01 12 132426135 132426135 G C PUS1 Silent p.V281V 0.51 TCGA-G2-A2EF-01 12 132426465 132426465 G C PUS1 Silent p.L391L 0.56 TCGA-G2-A2EF-01 12 1940449 1940449 C T LRTM2 Missense_Mutation p.S139L 0.26 tolerated(0.98) benign(0.001) TCGA-G2-A2EF-01 12 344379 344379 G A SLC6A13 Silent p.F236F 0.23 TCGA-G2-A2EF-01 12 46342235 46342235 G C SCAF11 Missense_Mutation p.S128C 0.21 tolerated(0.1) benign(0.016) TCGA-G2-A2EF-01 12 49445896 49445896 C - KMT2D Frame_Shift_Del p.E524Kfs*406 0.18 TCGA-G2-A2EF-01 12 56397462 56397462 G C SUOX Missense_Mutation p.E97Q 0.17 tolerated(0.07) benign(0.013) TCGA-G2-A2EF-01 12 56486584 56486584 G A ERBB3 Missense_Mutation p.R388Q 0.09 tolerated(0.11) benign(0.001) TCGA-G2-A2EF-01 12 57579595 57579595 C T LRP1 Missense_Mutation p.P2249S 0.51 benign(0.001) TCGA-G2-A2EF-01 12 62790135 62790135 G C USP15 Silent p.L877L 0.17 TCGA-G2-A2EF-01 12 75676043 75676043 G A CAPS2 Nonsense_Mutation p.Q553* 0.16 TCGA-G2-A2EF-01 12 81111211 81111211 C T MYF5 Silent p.I123I 0.14 TCGA-G2-A2EF-01 12 83081330 83081330 C T TMTC2 5'UTR 0.62 TCGA-G2-A2EF-01 12 9346775 9346775 C G PZP Silent p.V384V 0.33 TCGA-G2-A2EF-01 12 96312708 96312708 G C CCDC38 Missense_Mutation p.I28M 0.12 deleterious(0.01) possibly_damaging(0.668) TCGA-G2-A2EF-01 13 103301811 103301811 C G TPP2 Nonsense_Mutation p.S976* 0.16 TCGA-G2-A2EF-01 13 103459578 103459578 C T BIVM 5'UTR 0.45 TCGA-G2-A2EF-01 13 111932947 111932947 G C ARHGEF7 Missense_Mutation p.E571Q 0.49 tolerated(0.09) benign(0.004) TCGA-G2-A2EF-01 13 21736001 21736001 C T SKA3 Missense_Mutation p.D253N 0.26 tolerated(0.33) benign(0.004) TCGA-G2-A2EF-01 13 37584737 37584737 C T SUPT20H Silent p.Q718Q 0.28 TCGA-G2-A2EF-01 13 73334716 73334716 G A DIS3 Missense_Mutation p.S915L 0.58 tolerated(0.15) benign(0.197) TCGA-G2-A2EF-01 13 93879673 93879673 C T GPC6 5'UTR 0.12 TCGA-G2-A2EF-01 14 100157465 100157465 G A CYP46A1 Missense_Mutation p.G56D 0.37 tolerated(0.64) benign(0.002) TCGA-G2-A2EF-01 14 22102290 22102290 C A OR10G2 Missense_Mutation p.D237Y 0.44 deleterious(0) probably_damaging(0.943) TCGA-G2-A2EF-01 14 22102306 22102306 C T OR10G2 Silent p.L231L 0.40 TCGA-G2-A2EF-01 14 23502856 23502856 C G PSMB5 Missense_Mutation p.D76H 0.33 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 14 36005008 36005008 C G INSM2 Missense_Mutation p.S517C 0.34 tolerated(0.09) possibly_damaging(0.694) TCGA-G2-A2EF-01 14 62207727 62207727 G A HIF1A Silent p.L662L 0.50 TCGA-G2-A2EF-01 15 54630580 54630580 C T UNC13C Missense_Mutation p.P1536S 0.59 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G2-A2EF-01 15 59350651 59350651 C T RNF111 Missense_Mutation p.S423F 0.58 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-G2-A2EF-01 15 59350705 59350705 C T RNF111 Missense_Mutation p.S441L 0.52 tolerated_low_confidence(0.13) benign(0.002) TCGA-G2-A2EF-01 15 59350741 59350741 C G RNF111 Missense_Mutation p.S453C 0.58 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-G2-A2EF-01 15 69561630 69561630 T C GLCE 3'UTR 0.10 TCGA-G2-A2EF-01 15 86790936 86790936 C T AGBL1 Silent p.Y141Y 0.56 TCGA-G2-A2EF-01 16 30007659 30007659 G C INO80E Missense_Mutation p.D10H 0.33 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EF-01 16 4908646 4908646 C T UBN1 Silent p.F138F 0.38 TCGA-G2-A2EF-01 16 53488655 53488655 G - RBL2 Frame_Shift_Del p.E361Kfs*9 0.34 TCGA-G2-A2EF-01 16 67424463 67424463 G C TPPP3 Missense_Mutation p.F87L 0.64 deleterious(0.01) possibly_damaging(0.68) TCGA-G2-A2EF-01 16 67986272 67986272 C A SLC12A4 Silent p.S246S 0.72 TCGA-G2-A2EF-01 16 69373430 69373430 G A COG8 Missense_Mutation p.S9L 0.83 deleterious_low_confidence(0.01) benign(0.019) TCGA-G2-A2EF-01 16 88677707 88677707 G A ZC3H18 Missense_Mutation p.R413K 0.79 tolerated_low_confidence(0.06) unknown(0) TCGA-G2-A2EF-01 16 90001896 90001896 C T TUBB3 Missense_Mutation p.P346L 0.69 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-G2-A2EF-01 17 16327060 16327060 C T TRPV2 Silent p.A301A 0.47 TCGA-G2-A2EF-01 17 1703353 1703353 G C SMYD4 Silent p.L445L 0.54 TCGA-G2-A2EF-01 17 36863784 36863784 G A MLLT6 Missense_Mutation p.D79N 0.17 deleterious(0) unknown(0) TCGA-G2-A2EF-01 17 37331640 37331640 G A CACNB1 Missense_Mutation p.P535S 0.16 tolerated_low_confidence(0.46) benign(0.002) TCGA-G2-A2EF-01 17 37564338 37564338 G A MED1 Missense_Mutation p.S1379L 0.39 tolerated_low_confidence(0.28) unknown(0) TCGA-G2-A2EF-01 17 37564821 37564821 G C MED1 Missense_Mutation p.S1218C 0.56 deleterious_low_confidence(0) unknown(0) TCGA-G2-A2EF-01 17 43112207 43112207 G A DCAKD Missense_Mutation p.S16L 0.14 deleterious(0) possibly_damaging(0.643) TCGA-G2-A2EF-01 17 45199920 45199920 G A CDC27 Missense_Mutation p.S767F 0.47 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EF-01 17 48068882 48068882 C T DLX3 Silent p.%3D 0.16 TCGA-G2-A2EF-01 17 48940478 48940478 G A TOB1 Missense_Mutation p.L301F 0.47 tolerated(0.75) possibly_damaging(0.694) TCGA-G2-A2EF-01 17 49231768 49231768 C T NME1 Nonsense_Mutation p.Q12* 0.24 TCGA-G2-A2EF-01 17 56060115 56060115 C T VEZF1 Missense_Mutation p.E225K 0.13 deleterious(0.01) possibly_damaging(0.76) TCGA-G2-A2EF-01 17 59482604 59482604 G C TBX2 Missense_Mutation p.E365Q 0.33 tolerated(0.05) possibly_damaging(0.784) TCGA-G2-A2EF-01 17 61895626 61895626 G C DDX42 Missense_Mutation p.K895N 0.38 tolerated_low_confidence(0.2) benign(0.001) TCGA-G2-A2EF-01 17 72436224 72436224 C T GPRC5C Silent p.L148L 0.35 TCGA-G2-A2EF-01 17 73503147 73503147 C T CASKIN2 Missense_Mutation p.R103H 0.29 deleterious(0) probably_damaging(0.991) TCGA-G2-A2EF-01 17 74388108 74388108 G A UBE2O Silent p.I1011I 0.46 TCGA-G2-A2EF-01 17 7554879 7554879 G C ATP1B2 Missense_Mutation p.E15Q 0.25 tolerated(0.24) benign(0.39) TCGA-G2-A2EF-01 17 7578458 7578468 GGACGCGGGTG AC TP53 In_Frame_Del p.T155_R158delinsC 0.40 TCGA-G2-A2EF-01 17 77082516 77082516 A G ENGASE 3'UTR 0.36 TCGA-G2-A2EF-01 17 77808594 77808594 C A CBX4 Nonsense_Mutation p.E283* 0.42 TCGA-G2-A2EF-01 17 8018956 8018956 G A ALOXE3 Missense_Mutation p.R267W 0.58 tolerated(0.08) benign(0.004) TCGA-G2-A2EF-01 17 8926345 8926345 G A NTN1 Missense_Mutation p.A219T 0.38 deleterious(0.02) probably_damaging(1) TCGA-G2-A2EF-01 18 2925292 2925292 G A LPIN2 Missense_Mutation p.P623L 0.23 tolerated(0.1) benign(0.036) TCGA-G2-A2EF-01 18 47500848 47500848 G C MYO5B Missense_Mutation p.I398M 0.45 deleterious(0.03) benign(0.192) TCGA-G2-A2EF-01 18 72347227 72347227 G C ZNF407 Missense_Mutation p.D1418H 0.22 deleterious(0.02) probably_damaging(1) TCGA-G2-A2EF-01 19 10561309 10561309 C T PDE4A Silent p.V217V 0.35 TCGA-G2-A2EF-01 19 11151989 11151989 G A SMARCA4 Missense_Mutation p.E1393K 0.49 probably_damaging(0.995) TCGA-G2-A2EF-01 19 12501795 12501795 C G ZNF799 Missense_Mutation p.E473Q 0.33 deleterious(0.01) possibly_damaging(0.662) TCGA-G2-A2EF-01 19 16337279 16337279 C T AP1M1 Silent p.I210I 0.67 TCGA-G2-A2EF-01 19 23299927 23299927 T A ZNF730 5'UTR 0.14 TCGA-G2-A2EF-01 19 24309978 24309978 T C ZNF254 Silent p.T392T 0.15 TCGA-G2-A2EF-01 19 31039401 31039401 C G ZNF536 Missense_Mutation p.P959A 0.04 tolerated(1) benign(0) TCGA-G2-A2EF-01 19 36279303 36279303 C T ARHGAP33 Missense_Mutation p.S1118F 0.46 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-G2-A2EF-01 19 37676685 37676685 C T ZNF585B Missense_Mutation p.R585K 0.34 tolerated(1) benign(0.039) TCGA-G2-A2EF-01 19 38973699 38973699 C T RYR1 Silent p.V1551V 0.51 TCGA-G2-A2EF-01 19 39669275 39669275 G A PAK4 3'UTR 0.29 TCGA-G2-A2EF-01 19 39866385 39866385 G C SAMD4B Missense_Mutation p.E255Q 0.50 deleterious(0.01) benign(0.15) TCGA-G2-A2EF-01 19 39868175 39868175 G C SAMD4B Missense_Mutation p.Q385H 0.39 deleterious(0.04) benign(0.076) TCGA-G2-A2EF-01 19 42827851 42827851 C T TMEM145 Silent p.F437F 0.40 TCGA-G2-A2EF-01 19 43097978 43097978 C T CEACAM8 Missense_Mutation p.E47K 0.48 deleterious(0.04) possibly_damaging(0.893) TCGA-G2-A2EF-01 19 4363857 4363857 C T SH3GL1 Missense_Mutation p.E162K 0.53 tolerated(0.13) possibly_damaging(0.655) TCGA-G2-A2EF-01 19 4364106 4364106 C T SH3GL1 Silent p.E148E 0.59 TCGA-G2-A2EF-01 19 44152869 44152869 C G PLAUR 3'UTR 0.50 TCGA-G2-A2EF-01 19 44153037 44153037 C A PLAUR 3'UTR 0.43 TCGA-G2-A2EF-01 19 47219391 47219391 C T PRKD2 Silent p.Q79Q 0.54 TCGA-G2-A2EF-01 19 50155955 50155955 G A SCAF1 Missense_Mutation p.R770Q 0.44 unknown(0) TCGA-G2-A2EF-01 19 54657324 54657324 G A CNOT3 Intron 0.12 TCGA-G2-A2EF-01 19 54872615 54872615 A G LAIR1 Missense_Mutation p.V91A 0.03 tolerated(0.09) probably_damaging(0.959) TCGA-G2-A2EF-01 19 55594761 55594761 G A EPS8L1 Silent p.P410P 0.52 TCGA-G2-A2EF-01 19 55824272 55824272 G A TMEM150B Silent p.L219L 0.35 TCGA-G2-A2EF-01 19 56133794 56133794 C G ZNF784 Missense_Mutation p.D99H 0.17 deleterious(0.04) possibly_damaging(0.671) TCGA-G2-A2EF-01 19 57908503 57908503 G A ZNF548 Missense_Mutation p.D47N 0.28 tolerated(0.35) benign(0.004) TCGA-G2-A2EF-01 19 7565879 7565879 G T C19orf45 Silent p.P57P 0.50 TCGA-G2-A2EF-01 19 7585298 7585298 C A ZNF358 Silent p.L390L 0.49 TCGA-G2-A2EF-01 19 7928478 7928478 G A EVI5L Missense_Mutation p.D770N 0.37 tolerated_low_confidence(0.34) benign(0.002) TCGA-G2-A2EF-01 19 8654126 8654126 C T ADAMTS10 Missense_Mutation p.G720R 0.51 deleterious(0) possibly_damaging(0.885) TCGA-G2-A2EF-01 19 8654344 8654344 C T ADAMTS10 Missense_Mutation p.E676K 0.53 tolerated(0.14) possibly_damaging(0.726) TCGA-G2-A2EF-01 19 9060229 9060229 C T MUC16 Missense_Mutation p.E9073K 0.57 unknown(0) TCGA-G2-A2EF-01 19 9868197 9868197 G C ZNF846 Nonsense_Mutation p.S519* 0.25 TCGA-G2-A2EF-01 1 100387187 100387187 G C AGL Missense_Mutation p.E1527Q 0.17 deleterious(0.03) probably_damaging(0.967) TCGA-G2-A2EF-01 1 110022243 110022243 C G SYPL2 3'UTR 0.40 TCGA-G2-A2EF-01 1 110775579 110775579 C G KCNC4 3'UTR 0.28 TCGA-G2-A2EF-01 1 1117193 1117193 G T TTLL10 Missense_Mutation p.Q276H 0.42 tolerated(0.15) benign(0.094) TCGA-G2-A2EF-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.19 tolerated(0.06) benign(0.006) TCGA-G2-A2EF-01 1 144874708 144874708 C G PDE4DIP Missense_Mutation p.E1634Q 0.10 tolerated(0.16) possibly_damaging(0.839) TCGA-G2-A2EF-01 1 145282020 145282020 G A NOTCH2NL Missense_Mutation p.D234N 0.12 tolerated_low_confidence(0.92) benign(0) TCGA-G2-A2EF-01 1 145367724 145367724 G C NBPF10 Missense_Mutation p.K3440N 0.10 probably_damaging(0.992) TCGA-G2-A2EF-01 1 150620960 150620960 G C GOLPH3L Missense_Mutation p.S232C 0.23 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 1 150621093 150621093 G T GOLPH3L Missense_Mutation p.H188N 0.19 deleterious(0) probably_damaging(0.959) TCGA-G2-A2EF-01 1 151137595 151137595 C T LYSMD1 Missense_Mutation p.G47E 0.49 tolerated(0.08) possibly_damaging(0.463) TCGA-G2-A2EF-01 1 152281835 152281835 G C FLG Missense_Mutation p.H1843D 0.47 benign(0.227) TCGA-G2-A2EF-01 1 153902811 153902811 C T DENND4B Missense_Mutation p.D1485N 0.26 tolerated(0.11) benign(0.419) TCGA-G2-A2EF-01 1 154705586 154705586 G A KCNN3 Silent p.L495L 0.22 TCGA-G2-A2EF-01 1 155257083 155257083 C T HCN3 Missense_Mutation p.R533C 0.22 deleterious(0) probably_damaging(0.954) TCGA-G2-A2EF-01 1 155264270 155264270 C A PKLR Intron 0.41 TCGA-G2-A2EF-01 1 15809801 15809801 C T CELA2B Silent p.L133L 0.41 TCGA-G2-A2EF-01 1 15821948 15821948 C G CASP9 Splice_Site p.X290_splice 0.26 TCGA-G2-A2EF-01 1 158227240 158227240 T G CD1A Missense_Mutation p.L305V 0.23 tolerated(0.11) possibly_damaging(0.473) TCGA-G2-A2EF-01 1 158725183 158725183 C T OR6K6 Missense_Mutation p.T193I 0.47 deleterious(0.01) benign(0.111) TCGA-G2-A2EF-01 1 159906269 159906269 C T IGSF9 Missense_Mutation p.R198Q 0.31 deleterious(0.02) benign(0.187) TCGA-G2-A2EF-01 1 160523264 160523264 G C CD84 Missense_Mutation p.H222D 0.31 tolerated(0.05) benign(0.021) TCGA-G2-A2EF-01 1 16258553 16258553 G A SPEN Missense_Mutation p.E1940K 0.20 benign(0.242) TCGA-G2-A2EF-01 1 16890565 16890565 C T NBPF1 Missense_Mutation p.R1098K 0.11 tolerated_low_confidence(0.34) benign(0.115) TCGA-G2-A2EF-01 1 16890650 16890650 G T NBPF1 Missense_Mutation p.P1070T 0.07 deleterious_low_confidence(0.01) benign(0.364) TCGA-G2-A2EF-01 1 176564329 176564329 T C PAPPA2 Missense_Mutation p.V530A 0.40 deleterious(0) possibly_damaging(0.729) TCGA-G2-A2EF-01 1 179320465 179320465 C G SOAT1 Missense_Mutation p.F488L 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-G2-A2EF-01 1 186007984 186007984 C T HMCN1 Missense_Mutation p.R1959C 0.12 possibly_damaging(0.863) TCGA-G2-A2EF-01 1 197070512 197070512 T G ASPM Missense_Mutation p.E2623D 0.50 tolerated(0.55) benign(0.033) TCGA-G2-A2EF-01 1 201380568 201380568 G A TNNI1 Missense_Mutation p.R125W 0.45 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EF-01 1 21268770 21268770 G A EIF4G3 Silent p.L243L 0.19 TCGA-G2-A2EF-01 1 22178283 22178283 C T HSPG2 Splice_Site p.X2336_splice 0.46 TCGA-G2-A2EF-01 1 228509288 228509288 C T OBSCN Missense_Mutation p.R5873W 0.40 probably_damaging(0.992) TCGA-G2-A2EF-01 1 22987517 22987517 C T C1QB Silent p.L134L 0.20 TCGA-G2-A2EF-01 1 236908062 236908062 C T ACTN2 Silent p.I464I 0.28 TCGA-G2-A2EF-01 1 238053789 238053789 T C ZP4 Silent p.A49A 0.10 TCGA-G2-A2EF-01 1 240071762 240071762 G C CHRM3 Missense_Mutation p.W337C 0.29 deleterious(0.02) probably_damaging(0.976) TCGA-G2-A2EF-01 1 240071792 240071792 G A CHRM3 Silent p.E347E 0.33 TCGA-G2-A2EF-01 1 247588705 247588705 G A NLRP3 Missense_Mutation p.E654K 0.20 tolerated(0.82) benign(0.284) TCGA-G2-A2EF-01 1 29069930 29069930 C T YTHDF2 Missense_Mutation p.S383L 0.23 tolerated(0.17) benign(0.001) TCGA-G2-A2EF-01 1 32205546 32205546 C T BAI2 Silent p.L716L 0.17 TCGA-G2-A2EF-01 1 33149906 33149906 C G SYNC Missense_Mutation p.E437D 0.27 tolerated(0.17) benign(0.436) TCGA-G2-A2EF-01 1 33149943 33149943 C - SYNC Frame_Shift_Del p.R425Kfs*17 0.18 TCGA-G2-A2EF-01 1 33236757 33236757 C T KIAA1522 Silent p.V659V 0.45 TCGA-G2-A2EF-01 1 33992844 33992844 C T CSMD2 Missense_Mutation p.G3252R 0.10 deleterious(0.03) benign(0.001) TCGA-G2-A2EF-01 1 40537148 40537148 C G CAP1 Missense_Mutation p.F457L 0.61 deleterious(0) possibly_damaging(0.899) TCGA-G2-A2EF-01 1 55118945 55118945 G A MROH7 Missense_Mutation p.D116N 0.47 tolerated_low_confidence(0.72) benign(0.002) TCGA-G2-A2EF-01 1 57171852 57171852 G A PRKAA2 Missense_Mutation p.D461N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EF-01 1 892328 892328 C G NOC2L Missense_Mutation p.K144N 0.36 tolerated(0.07) possibly_damaging(0.821) TCGA-G2-A2EF-01 1 89236127 89236127 G T PKN2 Missense_Mutation p.Q199H 0.41 deleterious(0.01) probably_damaging(0.926) TCGA-G2-A2EF-01 1 906303 906303 G C PLEKHN1 Missense_Mutation p.E177Q 0.60 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 20 14307164 14307164 C T FLRT3 Missense_Mutation p.R330H 0.24 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EF-01 20 1456880 1456880 C T SIRPB2 Missense_Mutation p.E321K 0.30 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-G2-A2EF-01 20 23549013 23549013 C T CST9L Silent p.L25L 0.61 TCGA-G2-A2EF-01 20 26084238 26084238 G C NCOR1P1 RNA 0.39 TCGA-G2-A2EF-01 20 2635071 2635071 G C NOP56 Missense_Mutation p.E74Q 0.36 tolerated(0.06) benign(0.046) TCGA-G2-A2EF-01 20 2635115 2635118 GAAG TAA NOP56 Frame_Shift_Del p.K88Nfs*21 0.25 TCGA-G2-A2EF-01 20 2635517 2635517 G C NOP56 Missense_Mutation p.D165H 0.52 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 20 2635844 2635844 G C NOP56 Intron 0.45 TCGA-G2-A2EF-01 20 32000163 32000163 G C SNTA1 Missense_Mutation p.L327V 0.28 tolerated(0.44) possibly_damaging(0.493) TCGA-G2-A2EF-01 20 33026353 33026353 C G ITCH Missense_Mutation p.S240C 0.56 deleterious(0.04) probably_damaging(0.993) TCGA-G2-A2EF-01 20 36662412 36662412 G A RPRD1B Silent p.Q21Q 0.38 TCGA-G2-A2EF-01 20 45002118 45002118 C G ELMO2 Missense_Mutation p.E446Q 0.41 tolerated(0.06) possibly_damaging(0.457) TCGA-G2-A2EF-01 20 46313304 46313304 C T SULF2 Silent p.A253A 0.14 TCGA-G2-A2EF-01 20 48604577 48604577 C T SNAI1 Missense_Mutation p.S260L 0.52 tolerated_low_confidence(0.24) benign(0.002) TCGA-G2-A2EF-01 20 5528175 5528175 G C GPCPD1 3'UTR 0.40 TCGA-G2-A2EF-01 20 7963265 7963265 T A TMX4 Missense_Mutation p.Q228L 0.30 tolerated(0.22) benign(0.262) TCGA-G2-A2EF-01 20 825768 825768 C T FAM110A Silent p.L107L 0.50 TCGA-G2-A2EF-01 20 853462 853462 C T ANGPT4 3'UTR 0.70 TCGA-G2-A2EF-01 21 28296403 28296403 G C ADAMTS5 Missense_Mutation p.A921G 0.23 tolerated(0.17) probably_damaging(0.999) TCGA-G2-A2EF-01 22 19794230 19794230 C T GNB1L Silent p.P156P 0.47 TCGA-G2-A2EF-01 22 23404081 23404081 G A RTDR1 Silent p.V232V 0.59 TCGA-G2-A2EF-01 22 24472152 24472152 C A CABIN1 Silent p.L889L 0.21 TCGA-G2-A2EF-01 22 29153094 29153094 G C HSCB Missense_Mutation p.L215F 0.31 deleterious(0) probably_damaging(0.984) TCGA-G2-A2EF-01 22 41856351 41856351 C T PHF5A 3'UTR 0.68 TCGA-G2-A2EF-01 22 50471761 50471761 T G TTLL8 Missense_Mutation p.I401L 0.64 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EF-01 2 109086467 109086467 C T GCC2 Nonsense_Mutation p.Q228* 0.43 TCGA-G2-A2EF-01 2 113315529 113315529 G C POLR1B Missense_Mutation p.D401H 0.25 deleterious(0.03) possibly_damaging(0.617) TCGA-G2-A2EF-01 2 140995786 140995786 C T LRP1B Missense_Mutation p.E4499K 0.17 benign(0.292) TCGA-G2-A2EF-01 2 1459852 1459852 G T TPO Missense_Mutation p.R206L 0.17 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EF-01 2 175006600 175006600 C G OLA1 Missense_Mutation p.E168Q 0.28 tolerated(0.09) possibly_damaging(0.547) TCGA-G2-A2EF-01 2 175213677 175213677 C T CIR1 Missense_Mutation p.G301R 0.33 tolerated_low_confidence(0.39) possibly_damaging(0.65) TCGA-G2-A2EF-01 2 179424596 179424596 C T TTN Missense_Mutation p.D28755N 0.33 TCGA-G2-A2EF-01 2 182438553 182438553 T A CERKL Missense_Mutation p.K180N 0.37 deleterious(0.01) probably_damaging(0.968) TCGA-G2-A2EF-01 2 191897696 191897696 G C STAT4 Missense_Mutation p.Q678E 0.22 tolerated(0.83) benign(0.004) TCGA-G2-A2EF-01 2 202900750 202900750 G C FZD7 Missense_Mutation p.K460N 0.33 deleterious(0) benign(0.129) TCGA-G2-A2EF-01 2 228882308 228882308 C G SPHKAP Missense_Mutation p.E1088Q 0.23 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 2 32626615 32626615 G A BIRC6 Missense_Mutation p.D448N 0.45 benign(0.101) TCGA-G2-A2EF-01 2 38301609 38301609 G A CYP1B1 Missense_Mutation p.S308L 0.43 tolerated(0.12) benign(0.16) TCGA-G2-A2EF-01 2 48906488 48906488 G A STON1-GTF2A1L Silent p.K1152K 0.45 TCGA-G2-A2EF-01 2 50318575 50318575 C G NRXN1 Missense_Mutation p.E1242Q 0.17 deleterious(0.04) probably_damaging(1) TCGA-G2-A2EF-01 2 55253238 55253238 G A RTN4 Missense_Mutation p.S666L 0.23 tolerated(0.25) benign(0.008) TCGA-G2-A2EF-01 2 55464514 55464514 C A MTIF2 Missense_Mutation p.V641F 0.16 deleterious(0.02) benign(0.442) TCGA-G2-A2EF-01 2 86389141 86389141 C T IMMT Missense_Mutation p.R285K 0.56 tolerated(0.72) benign(0.098) TCGA-G2-A2EF-01 3 10283980 10283980 C G IRAK2 3'UTR 0.48 TCGA-G2-A2EF-01 3 108271090 108271090 C G KIAA1524 Missense_Mutation p.L846F 0.29 deleterious(0.01) possibly_damaging(0.891) TCGA-G2-A2EF-01 3 112998700 112998700 C G BOC Missense_Mutation p.L684V 0.32 tolerated(0.53) benign(0.032) TCGA-G2-A2EF-01 3 11301783 11301783 G A HRH1 Missense_Mutation p.D354N 0.41 deleterious(0.03) benign(0.113) TCGA-G2-A2EF-01 3 129289626 129289626 C G PLXND1 Intron 0.34 TCGA-G2-A2EF-01 3 129289674 129289674 C T PLXND1 Silent p.S1235S 0.41 TCGA-G2-A2EF-01 3 138219388 138219388 G A CEP70 Nonsense_Mutation p.Q464* 0.31 TCGA-G2-A2EF-01 3 139258320 139258320 C T RBP1 Missense_Mutation p.E81K 0.60 tolerated(0.08) probably_damaging(0.954) TCGA-G2-A2EF-01 3 14922086 14922086 G A FGD5 Missense_Mutation p.G889E 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A2EF-01 3 14964612 14964612 G A FGD5 Missense_Mutation p.M1289I 0.39 tolerated(0.37) possibly_damaging(0.577) TCGA-G2-A2EF-01 3 170945999 170945999 G C TNIK Silent p.V45V 0.65 TCGA-G2-A2EF-01 3 172115339 172115339 T C FNDC3B 3'UTR 0.29 TCGA-G2-A2EF-01 3 183014889 183014889 G C MCF2L2 Missense_Mutation p.R458G 0.08 deleterious(0) possibly_damaging(0.647) TCGA-G2-A2EF-01 3 183858320 183858320 C T EIF2B5 Missense_Mutation p.P320S 0.42 deleterious(0.01) probably_damaging(0.968) TCGA-G2-A2EF-01 3 194392818 194392818 C T LSG1 Missense_Mutation p.R25Q 0.35 deleterious(0.04) benign(0.361) TCGA-G2-A2EF-01 3 26751997 26751997 G C LRRC3B 3'UTR 0.33 TCGA-G2-A2EF-01 3 45773624 45773624 G C SACM1L Missense_Mutation p.E361Q 0.30 tolerated(0.46) benign(0.002) TCGA-G2-A2EF-01 3 49142171 49142171 G A QARS 5'UTR 0.24 TCGA-G2-A2EF-01 3 49452277 49452277 C G TCTA Silent p.L98L 0.19 TCGA-G2-A2EF-01 3 49722087 49722087 G T MST1 Missense_Mutation p.S591Y 0.22 deleterious(0) benign(0.351) TCGA-G2-A2EF-01 3 52547747 52547747 G C STAB1 Missense_Mutation p.Q1095H 0.26 deleterious(0.03) benign(0.151) TCGA-G2-A2EF-01 3 52558714 52558714 G A NT5DC2 Silent p.F482F 0.28 TCGA-G2-A2EF-01 3 88104763 88104763 C T CGGBP1 Missense_Mutation p.D122N 0.27 tolerated(0.17) benign(0.313) TCGA-G2-A2EF-01 4 101984485 101984485 T C PPP3CA Missense_Mutation p.M329V 0.50 deleterious(0) benign(0.004) TCGA-G2-A2EF-01 4 126241535 126241535 T A FAT4 Missense_Mutation p.D1323E 0.30 probably_damaging(0.997) TCGA-G2-A2EF-01 4 134072451 134072451 G C PCDH10 Missense_Mutation p.D386H 0.28 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 4 140651796 140651796 C T MAML3 Missense_Mutation p.R702Q 0.25 probably_damaging(0.996) TCGA-G2-A2EF-01 4 160244690 160244690 G A RAPGEF2 Missense_Mutation p.G196E 0.27 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 4 25160685 25160685 G C SEPSECS Silent p.L53L 0.31 TCGA-G2-A2EF-01 4 79360104 79360104 C G FRAS1 Missense_Mutation p.F1805L 0.20 benign(0.241) TCGA-G2-A2EF-01 4 83276424 83276424 A T HNRNPD Intron 0.42 TCGA-G2-A2EF-01 4 89415386 89415386 T - HERC5 Frame_Shift_Del p.A784Pfs*23 0.20 TCGA-G2-A2EF-01 5 10254942 10254942 G A CCT5 Missense_Mutation p.G108E 0.51 deleterious(0) probably_damaging(0.986) TCGA-G2-A2EF-01 5 133326753 133326753 C T VDAC1 Silent p.T70T 0.13 TCGA-G2-A2EF-01 5 134910273 134910273 G A CXCL14 Silent p.N103N 0.30 TCGA-G2-A2EF-01 5 140536855 140536855 T C PCDHB17 Silent p.L427L 0.28 TCGA-G2-A2EF-01 5 140718701 140718701 G C PCDHGA2 Missense_Mutation p.E55Q 0.31 tolerated_low_confidence(0.16) benign(0.119) TCGA-G2-A2EF-01 5 140774463 140774463 G A PCDHGA8 Missense_Mutation p.V695M 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-G2-A2EF-01 5 141336156 141336156 C T PCDH12 Missense_Mutation p.E421K 0.33 deleterious(0) probably_damaging(1) TCGA-G2-A2EF-01 5 14497101 14497101 G A TRIO Missense_Mutation p.G2665E 0.19 unknown(0) TCGA-G2-A2EF-01 5 156381553 156381553 C T TIMD4 Silent p.P91P 0.34 TCGA-G2-A2EF-01 5 156788517 156788517 G A CYFIP2 Missense_Mutation p.E958K 0.35 tolerated(0.32) benign(0.026) TCGA-G2-A2EF-01 5 176070159 176070159 C T EIF4E1B Missense_Mutation p.T31I 0.43 tolerated_low_confidence(0.16) benign(0.007) TCGA-G2-A2EF-01 5 180000991 180000991 A C CNOT6 Missense_Mutation p.I489L 0.31 tolerated(0.06) benign(0.013) TCGA-G2-A2EF-01 5 66449324 66449324 G A MAST4 Silent p.L1188L 0.33 TCGA-G2-A2EF-01 5 67576548 67576548 C G PIK3R1 Nonsense_Mutation p.S276* 0.23 TCGA-G2-A2EF-01 5 90074805 90074805 G C GPR98 Missense_Mutation p.E4325Q 0.31 probably_damaging(0.913) TCGA-G2-A2EF-01 6 105198288 105198288 G C HACE1 Missense_Mutation p.I757M 0.17 tolerated(0.12) possibly_damaging(0.587) TCGA-G2-A2EF-01 6 105800844 105800844 C T PREP Intron 0.43 TCGA-G2-A2EF-01 6 110777629 110777629 G C SLC22A16 Intron 0.13 TCGA-G2-A2EF-01 6 1313255 1313256 - GC FOXQ1 Frame_Shift_Ins p.E107Afs*35 0.44 TCGA-G2-A2EF-01 6 144860468 144860468 C G UTRN Silent p.L2136L 0.28 TCGA-G2-A2EF-01 6 149959681 149959681 C G KATNA1 Translation_Start_Site p.M1? 0.18 deleterious(0.04) probably_damaging(0.937) TCGA-G2-A2EF-01 6 150048080 150048080 C G NUP43 3'UTR 0.60 TCGA-G2-A2EF-01 6 150048189 150048189 C T NUP43 Silent p.V353V 0.48 TCGA-G2-A2EF-01 6 1726704 1726704 C G GMDS Missense_Mutation p.E311D 0.17 tolerated_low_confidence(0.55) benign(0) TCGA-G2-A2EF-01 6 1726724 1726724 C T GMDS Missense_Mutation p.E305K 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-G2-A2EF-01 6 24701842 24701842 G A ACOT13 Silent p.%3D 0.48 TCGA-G2-A2EF-01 6 26031997 26031997 C T HIST1H3B Missense_Mutation p.E98K 0.22 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-G2-A2EF-01 6 26056393 26056393 C T HIST1H1C Silent p.V88V 0.20 TCGA-G2-A2EF-01 6 26156557 26156557 C G HIST1H2BD 5'Flank 0.13 TCGA-G2-A2EF-01 6 26501534 26501534 C G BTN1A1 Missense_Mutation p.S7C 0.41 tolerated(0.26) benign(0.006) TCGA-G2-A2EF-01 6 27925961 27925961 G C OR2B6 3'Flank 0.22 TCGA-G2-A2EF-01 6 31783561 31783561 G A HSPA1A Missense_Mutation p.D10N 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G2-A2EF-01 6 32609935 32609935 A G HLA-DQA1 Missense_Mutation p.K173R 0.22 tolerated(0.06) possibly_damaging(0.687) TCGA-G2-A2EF-01 6 32713754 32713754 A G HLA-DQA2 Missense_Mutation p.K173R 0.12 deleterious(0.05) probably_damaging(0.956) TCGA-G2-A2EF-01 6 33423781 33423781 C T ZBTB9 Nonsense_Mutation p.Q302* 0.29 TCGA-G2-A2EF-01 6 41908144 41908144 G C CCND3 Missense_Mutation p.I126M 0.25 tolerated(0.22) benign(0.117) TCGA-G2-A2EF-01 6 56473196 56473196 G C DST Intron 0.29 TCGA-G2-A2EF-01 6 56880031 56880031 G A BEND6 Nonsense_Mutation p.W133* 0.37 TCGA-G2-A2EF-01 6 72011597 72011597 G C OGFRL1 Missense_Mutation p.E401Q 0.40 deleterious_low_confidence(0.03) benign(0.412) TCGA-G2-A2EF-01 6 7584100 7584100 C T DSP Missense_Mutation p.S2202L 0.40 benign(0) TCGA-G2-A2EF-01 7 100285422 100285422 C T GIGYF1 Missense_Mutation p.E84K 0.27 deleterious(0) unknown(0) TCGA-G2-A2EF-01 7 100552516 100552516 G A MUC3A Missense_Mutation p.E423K 0.23 tolerated(0.26) benign(0.066) TCGA-G2-A2EF-01 7 103194142 103194142 G C RELN Missense_Mutation p.I1978M 0.38 tolerated(0.06) probably_damaging(0.991) TCGA-G2-A2EF-01 7 136935980 136935980 G A PTN Nonsense_Mutation p.Q150* 0.27 TCGA-G2-A2EF-01 7 140301532 140301532 C T DENND2A Silent p.L222L 0.27 TCGA-G2-A2EF-01 7 148978676 148978676 G T ZNF783 Missense_Mutation p.G295C 0.36 deleterious(0.02) benign(0.329) TCGA-G2-A2EF-01 7 148978677 148978677 G T ZNF783 Missense_Mutation p.G295V 0.35 tolerated(0.11) benign(0.053) TCGA-G2-A2EF-01 7 149476138 149476138 G C SSPO RNA 0.32 TCGA-G2-A2EF-01 7 151874146 151874146 C A KMT2C Nonsense_Mutation p.E2798* 0.43 TCGA-G2-A2EF-01 7 151874147 151874147 C A KMT2C Missense_Mutation p.K2797N 0.44 benign(0.008) TCGA-G2-A2EF-01 7 27148001 27148005 ACGGG - HOXA3 Frame_Shift_Del p.P288* 0.41 TCGA-G2-A2EF-01 7 32598734 32598734 G A AVL9 Missense_Mutation p.M291I 0.38 tolerated(0.24) benign(0) TCGA-G2-A2EF-01 7 33136118 33136118 C G RP9 Missense_Mutation p.E152Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-G2-A2EF-01 7 48318168 48318168 T C ABCA13 Silent p.F2459F 0.37 TCGA-G2-A2EF-01 7 53103750 53103750 A G POM121L12 Missense_Mutation p.N129S 0.40 tolerated(0.07) possibly_damaging(0.801) TCGA-G2-A2EF-01 7 57188660 57188660 G A ZNF479 Silent p.N154N 0.30 TCGA-G2-A2EF-01 7 6840699 6840699 C T CCZ1B Missense_Mutation p.E425K 0.19 tolerated(0.35) benign(0.071) TCGA-G2-A2EF-01 7 73275587 73275587 C G WBSCR28 Silent p.L21L 0.34 TCGA-G2-A2EF-01 7 7678736 7678736 C T RPA3 Missense_Mutation p.E47K 0.15 deleterious(0.01) benign(0.361) TCGA-G2-A2EF-01 7 7678739 7678739 C A RPA3 Nonsense_Mutation p.G46* 0.13 TCGA-G2-A2EF-01 7 7680135 7680135 C G RPA3 5'UTR 0.32 TCGA-G2-A2EF-01 7 7680145 7680145 C T RPA3 5'UTR 0.31 TCGA-G2-A2EF-01 7 81355231 81355231 T C HGF Silent p.P381P 0.14 TCGA-G2-A2EF-01 7 86988563 86988563 G A CROT Missense_Mutation p.E81K 0.14 tolerated(0.6) benign(0.099) TCGA-G2-A2EF-01 7 91631551 91631551 G A AKAP9 Missense_Mutation p.E774K 0.14 possibly_damaging(0.764) TCGA-G2-A2EF-01 7 99312307 99312307 T C CYP3A7 Splice_Site p.X224_splice 0.30 TCGA-G2-A2EF-01 8 10466760 10466760 G A RP1L1 Silent p.L1616L 0.50 TCGA-G2-A2EF-01 8 121170472 121170472 G A COL14A1 Silent p.V64V 0.15 TCGA-G2-A2EF-01 8 125528125 125528125 C T TATDN1 Intron 0.22 TCGA-G2-A2EF-01 8 125580562 125580562 G A MTSS1 Intron 0.24 TCGA-G2-A2EF-01 8 134145801 134145801 G C TG Missense_Mutation p.E2695D 0.39 tolerated(0.72) benign(0.02) TCGA-G2-A2EF-01 8 142228412 142228412 C T SLC45A4 Missense_Mutation p.A392T 0.06 tolerated(0.23) possibly_damaging(0.742) TCGA-G2-A2EF-01 8 143603352 143603352 C T BAI1 Silent p.F1017F 0.18 TCGA-G2-A2EF-01 8 145947781 145947781 C T ZNF251 Missense_Mutation p.E422K 0.48 tolerated(0.08) benign(0.393) TCGA-G2-A2EF-01 8 17813004 17813004 G C PCM1 Missense_Mutation p.Q438H 0.50 deleterious(0.01) benign(0.035) TCGA-G2-A2EF-01 8 42196076 42196076 C A POLB 5'UTR 0.69 TCGA-G2-A2EF-01 8 70536366 70536366 G - SULF1 Frame_Shift_Del p.G596Afs*19 0.24 TCGA-G2-A2EF-01 8 72987642 72987642 C T TRPA1 Translation_Start_Site p.M1? 0.46 deleterious_low_confidence(0.01) benign(0.098) TCGA-G2-A2EF-01 9 124103412 124103412 C G STOM 3'UTR 0.68 TCGA-G2-A2EF-01 9 136214954 136214954 C T MED22 5'Flank 0.61 TCGA-G2-A2EF-01 9 19324474 19324474 G A DENND4C Missense_Mutation p.G641E 0.25 deleterious(0.03) possibly_damaging(0.899) TCGA-G2-A2EF-01 9 6015339 6015339 G C RANBP6 Missense_Mutation p.P90R 0.29 deleterious(0.01) possibly_damaging(0.56) TCGA-G2-A2EF-01 9 79634833 79634833 C T FOXB2 Missense_Mutation p.A88V 0.80 deleterious(0) unknown(0) TCGA-G2-A2EF-01 9 84531740 84531740 C G SPATA31D5P RNA 0.60 TCGA-G2-A2EF-01 9 84547489 84547489 C G RP11-383M4.6 Intron 0.45 TCGA-G2-A2EF-01 9 98229643 98229643 C T PTCH1 Missense_Mutation p.R772K 0.74 tolerated(0.33) benign(0.055) TCGA-G2-A2EF-01 X 101581490 101581490 A T NXF2 3'UTR 0.42 TCGA-G2-A2EF-01 X 30873150 30873150 C G TAB3 Missense_Mutation p.R211T 0.56 tolerated(0.83) probably_damaging(0.983) TCGA-G2-A2EF-01 X 47272995 47272995 G A ZNF157 3'UTR 0.29 TCGA-G2-A2EF-01 X 70472591 70472591 G A ZMYM3 Missense_Mutation p.S172F 0.80 deleterious_low_confidence(0.01) benign(0.347) TCGA-G2-A2EF-01 X 7268123 7268123 G A STS Missense_Mutation p.E525K 0.60 tolerated(0.59) benign(0.011) TCGA-G2-A2EJ-01 10 106970924 106970924 G T SORCS3 Missense_Mutation p.S764I 0.36 deleterious(0) benign(0.284) TCGA-G2-A2EJ-01 10 115349525 115349525 C G NRAP Missense_Mutation p.R1663T 0.33 deleterious(0) probably_damaging(0.948) TCGA-G2-A2EJ-01 10 124392811 124392811 G C DMBT1 Missense_Mutation p.E2039Q 0.32 tolerated(0.3) possibly_damaging(0.87) TCGA-G2-A2EJ-01 10 128798508 128798508 G A DOCK1 Missense_Mutation p.E308K 0.22 deleterious(0.02) benign(0.292) TCGA-G2-A2EJ-01 10 135125328 135125328 G T ZNF511 Missense_Mutation p.R221S 0.20 tolerated(0.1) benign(0.281) TCGA-G2-A2EJ-01 10 26800746 26800746 G C APBB1IP Missense_Mutation p.R201P 0.24 deleterious(0.01) probably_damaging(0.945) TCGA-G2-A2EJ-01 10 28906704 28906704 G A WAC Missense_Mutation p.R622Q 0.24 tolerated(0.31) probably_damaging(0.99) TCGA-G2-A2EJ-01 10 38466894 38466894 C T RP11-508N22.9 RNA 0.31 TCGA-G2-A2EJ-01 10 52390686 52390686 A C RP11-50E11.3 RNA 0.11 TCGA-G2-A2EJ-01 10 61829613 61829613 C G ANK3 Missense_Mutation p.E3676Q 0.21 probably_damaging(0.968) TCGA-G2-A2EJ-01 10 61959942 61959942 G T ANK3 Missense_Mutation p.A479D 0.29 benign(0.315) TCGA-G2-A2EJ-01 10 6258109 6258109 G C PFKFB3 Missense_Mutation p.L107F 0.34 probably_damaging(1) TCGA-G2-A2EJ-01 10 75407393 75407393 C T SYNPO2L Missense_Mutation p.E673K 0.28 deleterious(0) probably_damaging(0.991) TCGA-G2-A2EJ-01 10 75478928 75478928 C T RP11-574K11.28 RNA 0.33 TCGA-G2-A2EJ-01 10 75555297 75555297 G A ZSWIM8 Missense_Mutation p.G970D 0.29 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 10 75886013 75886013 C G AP3M1 Missense_Mutation p.G302R 0.22 deleterious(0.01) possibly_damaging(0.595) TCGA-G2-A2EJ-01 10 78649235 78649235 G A KCNMA1 Silent p.L1128L 0.25 TCGA-G2-A2EJ-01 10 94824180 94824180 G T CYP26C1 Missense_Mutation p.A250S 0.23 tolerated(0.37) possibly_damaging(0.73) TCGA-G2-A2EJ-01 10 95720971 95720971 G T PIPSL RNA 0.29 TCGA-G2-A2EJ-01 11 103908506 103908506 C G DDI1 Missense_Mutation p.S319C 0.27 deleterious(0.01) benign(0.12) TCGA-G2-A2EJ-01 11 115085457 115085457 G C CADM1 Missense_Mutation p.Q289E 0.28 tolerated(1) benign(0.004) TCGA-G2-A2EJ-01 11 118185207 118185207 G C CD3E Missense_Mutation p.E189Q 0.32 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 11 119029009 119029009 C G ABCG4 Missense_Mutation p.F378L 0.33 tolerated(1) benign(0.009) TCGA-G2-A2EJ-01 11 120980049 120980049 G C TECTA Missense_Mutation p.E110Q 0.32 tolerated(0.28) possibly_damaging(0.651) TCGA-G2-A2EJ-01 11 1215377 1215377 G A MUC5AC RNA 0.30 TCGA-G2-A2EJ-01 11 124294715 124294715 G A OR8B4 Missense_Mutation p.S18L 0.30 deleterious_low_confidence(0) benign(0.073) TCGA-G2-A2EJ-01 11 124524628 124524628 G A SIAE Missense_Mutation p.S156F 0.30 deleterious(0.01) possibly_damaging(0.553) TCGA-G2-A2EJ-01 11 124766183 124766183 G A ROBO4 Missense_Mutation p.A197V 0.29 tolerated(0.54) benign(0.024) TCGA-G2-A2EJ-01 11 132082042 132082042 G A NTM Splice_Site p.X176_splice 0.28 TCGA-G2-A2EJ-01 11 18266878 18266878 G A SAA2 3'UTR 0.22 TCGA-G2-A2EJ-01 11 19256582 19256582 C T E2F8 Missense_Mutation p.D159N 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-G2-A2EJ-01 11 36297787 36297787 G C COMMD9 Missense_Mutation p.S119C 0.26 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 11 4411526 4411526 T A TRIM21 Missense_Mutation p.E38D 0.35 tolerated(0.24) benign(0.109) TCGA-G2-A2EJ-01 11 534288 534288 C T HRAS Missense_Mutation p.G12D 0.20 deleterious(0) possibly_damaging(0.56) TCGA-G2-A2EJ-01 11 57075938 57075938 G T TNKS1BP1 Nonsense_Mutation p.S1416* 0.12 TCGA-G2-A2EJ-01 11 59211229 59211229 C T OR5A1 Silent p.F196F 0.31 TCGA-G2-A2EJ-01 11 59211279 59211279 C A OR5A1 Nonsense_Mutation p.S213* 0.31 TCGA-G2-A2EJ-01 11 6008147 6008147 G C OR52L1 Missense_Mutation p.S5C 0.26 deleterious_low_confidence(0.02) benign(0.439) TCGA-G2-A2EJ-01 11 62396347 62396347 G A GANAB Nonsense_Mutation p.Q714* 0.28 TCGA-G2-A2EJ-01 11 65545581 65545581 C T AP5B1 Missense_Mutation p.E795K 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-G2-A2EJ-01 11 66192075 66192075 G A NPAS4 Missense_Mutation p.E572K 0.24 deleterious(0.02) probably_damaging(0.989) TCGA-G2-A2EJ-01 11 66384516 66384516 G C RBM14-RBM4 Missense_Mutation p.D109H 0.29 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EJ-01 11 67173129 67173129 C G TBC1D10C Missense_Mutation p.Q142E 0.28 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EJ-01 11 67353675 67353675 G T GSTP1 Missense_Mutation p.G146V 0.36 deleterious(0.02) possibly_damaging(0.87) TCGA-G2-A2EJ-01 11 6943194 6943194 T C OR2D3 Missense_Mutation p.V321A 0.30 tolerated(0.54) benign(0) TCGA-G2-A2EJ-01 11 75277666 75277666 C T SERPINH1 Missense_Mutation p.S91L 0.24 deleterious(0.01) possibly_damaging(0.586) TCGA-G2-A2EJ-01 11 83641425 83641425 G C DLG2 Nonsense_Mutation p.S481* 0.27 TCGA-G2-A2EJ-01 11 89028453 89028453 G A TYR Silent p.K503K 0.24 TCGA-G2-A2EJ-01 12 109927779 109927779 C G UBE3B Silent p.L200L 0.26 TCGA-G2-A2EJ-01 12 109928847 109928847 C T UBE3B Intron 0.28 TCGA-G2-A2EJ-01 12 109928922 109928922 C G UBE3B Missense_Mutation p.L235V 0.39 tolerated(0.1) benign(0.098) TCGA-G2-A2EJ-01 12 109937445 109937445 C G UBE3B Silent p.L316L 0.33 TCGA-G2-A2EJ-01 12 109939251 109939251 C A UBE3B Missense_Mutation p.F398L 0.30 tolerated(0.39) possibly_damaging(0.669) TCGA-G2-A2EJ-01 12 109961811 109961811 C G UBE3B Missense_Mutation p.S798C 0.22 deleterious(0) probably_damaging(0.926) TCGA-G2-A2EJ-01 12 120935923 120935923 G C DYNLL1 Missense_Mutation p.R60S 0.21 deleterious(0.02) benign(0.303) TCGA-G2-A2EJ-01 12 124496822 124496822 C T ZNF664 Missense_Mutation p.S44L 0.20 deleterious(0) benign(0.238) TCGA-G2-A2EJ-01 12 125834167 125834167 C T TMEM132B Silent p.F74F 0.33 TCGA-G2-A2EJ-01 12 13219676 13219676 G A KIAA1467 Missense_Mutation p.V319I 0.21 deleterious(0.04) benign(0.089) TCGA-G2-A2EJ-01 12 14840914 14840914 C T GUCY2C Missense_Mutation p.E101K 0.26 deleterious(0.02) benign(0.35) TCGA-G2-A2EJ-01 12 31819050 31819050 G A METTL20 Missense_Mutation p.R115K 0.30 tolerated(0.33) benign(0.014) TCGA-G2-A2EJ-01 12 39716469 39716469 C A KIF21A Splice_Site p.X1224_splice 0.34 TCGA-G2-A2EJ-01 12 40716180 40716180 C T LRRK2 Missense_Mutation p.P1793S 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-G2-A2EJ-01 12 43925874 43925874 G A ADAMTS20 Missense_Mutation p.S193F 0.38 tolerated(0.08) benign(0.037) TCGA-G2-A2EJ-01 12 5021124 5021124 G A KCNA1 Missense_Mutation p.D194N 0.35 tolerated(0.15) benign(0) TCGA-G2-A2EJ-01 12 53298670 53298670 G A KRT8 Silent p.R60R 0.44 TCGA-G2-A2EJ-01 12 57453736 57453736 C T TMEM194A Missense_Mutation p.E421K 0.28 deleterious(0.02) possibly_damaging(0.899) TCGA-G2-A2EJ-01 12 57453784 57453784 C T TMEM194A Missense_Mutation p.E405K 0.22 deleterious(0.01) possibly_damaging(0.899) TCGA-G2-A2EJ-01 12 57865455 57865455 G C GLI1 Missense_Mutation p.A978P 0.35 tolerated_low_confidence(0.24) benign(0.221) TCGA-G2-A2EJ-01 12 57871349 57871349 C G ARHGAP9 Missense_Mutation p.D217H 0.28 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EJ-01 12 6690875 6690875 G C CHD4 Missense_Mutation p.P1541A 0.22 tolerated(0.1) possibly_damaging(0.811) TCGA-G2-A2EJ-01 12 6692109 6692109 G C CHD4 Intron 0.29 TCGA-G2-A2EJ-01 12 6692427 6692427 G C CHD4 Missense_Mutation p.L1333V 0.33 deleterious(0) possibly_damaging(0.874) TCGA-G2-A2EJ-01 12 85438530 85438530 G A LRRIQ1 Missense_Mutation p.M93I 0.21 tolerated(0.29) benign(0.01) TCGA-G2-A2EJ-01 13 115090045 115090045 C T CHAMP1 Missense_Mutation p.S243L 0.37 tolerated(0.7) benign(0.005) TCGA-G2-A2EJ-01 13 21175890 21175890 C T IFT88 Nonsense_Mutation p.Q296* 0.19 TCGA-G2-A2EJ-01 13 29599309 29599309 T C MTUS2 Silent p.V168V 0.29 TCGA-G2-A2EJ-01 13 39621205 39621205 G C NHLRC3 Missense_Mutation p.R236T 0.32 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 13 52343416 52343416 C T DHRS12 Silent p.A240A 0.47 TCGA-G2-A2EJ-01 13 53422431 53422431 C T PCDH8 Silent p.G47G 0.21 TCGA-G2-A2EJ-01 13 92560309 92560309 C T GPC5 Nonsense_Mutation p.Q467* 0.28 TCGA-G2-A2EJ-01 13 93879779 93879779 G A GPC6 Missense_Mutation p.D24N 0.22 tolerated(0.24) benign(0.043) TCGA-G2-A2EJ-01 13 96506627 96506627 G T UGGT2 Missense_Mutation p.R1371S 0.21 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 14 106054028 106054028 C T IGHA2 Missense_Mutation p.R164H 0.33 tolerated(0.08) benign(0.027) TCGA-G2-A2EJ-01 14 20248955 20248955 A T OR4M1 Silent p.I158I 0.11 TCGA-G2-A2EJ-01 14 24729739 24729739 C A TGM1 Missense_Mutation p.R225L 0.22 tolerated(0.21) probably_damaging(0.951) TCGA-G2-A2EJ-01 14 45642298 45642298 C G FANCM Missense_Mutation p.S734C 0.31 tolerated(0.06) benign(0.013) TCGA-G2-A2EJ-01 14 51378884 51378884 C T PYGL Silent p.T586T 0.24 TCGA-G2-A2EJ-01 14 63447854 63447854 G C KCNH5 Missense_Mutation p.F226L 0.47 tolerated(0.17) probably_damaging(0.978) TCGA-G2-A2EJ-01 14 64588835 64588835 C G SYNE2 Missense_Mutation p.Q4422E 0.41 benign(0.221) TCGA-G2-A2EJ-01 14 69387726 69387726 C T ACTN1 Missense_Mutation p.E113K 0.22 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 14 77273020 77273020 G A ANGEL1 Silent p.L373L 0.45 TCGA-G2-A2EJ-01 14 94942572 94942572 C G SERPINA9 5'UTR 0.27 TCGA-G2-A2EJ-01 14 95033521 95033521 G C SERPINA4 Missense_Mutation p.E288D 0.35 tolerated(0.06) possibly_damaging(0.52) TCGA-G2-A2EJ-01 14 95669499 95669499 G A CLMN Silent p.F729F 0.28 TCGA-G2-A2EJ-01 15 44788618 44788618 G A CTDSPL2 Silent p.A244A 0.28 TCGA-G2-A2EJ-01 15 45365660 45365660 G C SORD Missense_Mutation p.E336Q 0.20 deleterious(0.04) benign(0.049) TCGA-G2-A2EJ-01 15 45814592 45814592 G A SLC30A4 5'UTR 0.21 TCGA-G2-A2EJ-01 15 50152596 50152596 G C ATP8B4 Nonsense_Mutation p.S1125* 0.27 TCGA-G2-A2EJ-01 15 50189570 50189570 G C ATP8B4 Missense_Mutation p.F872L 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-G2-A2EJ-01 15 50535004 50535004 G A HDC Missense_Mutation p.S481F 0.28 deleterious(0.01) benign(0.003) TCGA-G2-A2EJ-01 15 52011794 52011794 C G SCG3 3'UTR 0.33 TCGA-G2-A2EJ-01 15 65667594 65667594 C A IGDCC3 Nonsense_Mutation p.E84* 0.28 TCGA-G2-A2EJ-01 15 69728485 69728485 G A KIF23 Missense_Mutation p.M427I 0.24 deleterious(0.02) possibly_damaging(0.619) TCGA-G2-A2EJ-01 15 72039333 72039333 C G THSD4 Missense_Mutation p.C731W 0.40 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 15 74425108 74425108 C T ISLR2 Missense_Mutation p.R5W 0.33 tolerated(0.18) probably_damaging(0.973) TCGA-G2-A2EJ-01 15 78566699 78566699 C T DNAJA4 Silent p.R222R 0.31 TCGA-G2-A2EJ-01 15 83447543 83447543 C T FSD2 Silent p.L362L 0.35 TCGA-G2-A2EJ-01 15 85159663 85159663 C G ZSCAN2 Intron 0.33 TCGA-G2-A2EJ-01 15 89402347 89402347 G A ACAN Silent p.V2177V 0.23 TCGA-G2-A2EJ-01 16 24816470 24816470 C T TNRC6A Nonsense_Mutation p.Q1374* 0.27 TCGA-G2-A2EJ-01 16 2546212 2546212 C T RP11-20I23.1 Silent p.D21D 0.33 TCGA-G2-A2EJ-01 16 2546956 2546956 C G RP11-20I23.1 Missense_Mutation p.I269M 0.22 tolerated(0.22) possibly_damaging(0.508) TCGA-G2-A2EJ-01 16 2546965 2546965 C T RP11-20I23.1 Silent p.F272F 0.23 TCGA-G2-A2EJ-01 16 27475748 27475748 G A GTF3C1 Missense_Mutation p.A1922V 0.29 tolerated(0.28) benign(0.002) TCGA-G2-A2EJ-01 16 28878727 28878727 G C SH2B1 Missense_Mutation p.D339H 0.26 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 16 29852959 29852959 G A MVP Missense_Mutation p.E412K 0.34 deleterious(0) probably_damaging(0.972) TCGA-G2-A2EJ-01 16 30535908 30535908 C T ZNF768 Missense_Mutation p.C518Y 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 16 335191 335191 C G PDIA2 Missense_Mutation p.F262L 0.16 deleterious(0) possibly_damaging(0.734) TCGA-G2-A2EJ-01 16 3451899 3451899 G C ZNF174 5'UTR 0.14 TCGA-G2-A2EJ-01 16 56509430 56509430 G A OGFOD1 Missense_Mutation p.E474K 0.39 deleterious(0.01) possibly_damaging(0.72) TCGA-G2-A2EJ-01 16 67298323 67298323 C T SLC9A5 Silent p.F637F 0.26 TCGA-G2-A2EJ-01 16 67654676 67654676 G A CTCF Missense_Mutation p.S388N 0.29 deleterious(0) probably_damaging(0.992) TCGA-G2-A2EJ-01 16 67692069 67692069 C T ACD Silent p.Q428Q 0.35 TCGA-G2-A2EJ-01 16 844108 844108 C T CHTF18 Silent p.D619D 0.19 TCGA-G2-A2EJ-01 16 89895104 89895104 G A SPIRE2 Missense_Mutation p.R49H 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-G2-A2EJ-01 17 21204234 21204234 G A MAP2K3 Missense_Mutation p.D110N 0.12 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EJ-01 17 3661136 3661136 G C ITGAE Nonsense_Mutation p.S295* 0.42 TCGA-G2-A2EJ-01 17 38251345 38251345 C A NR1D1 Missense_Mutation p.G426V 0.38 tolerated(0.73) benign(0.086) TCGA-G2-A2EJ-01 17 38253437 38253437 G C NR1D1 Nonsense_Mutation p.S84* 0.26 TCGA-G2-A2EJ-01 17 38645050 38645050 G C TNS4 Missense_Mutation p.S204C 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-G2-A2EJ-01 17 39394660 39394660 G C KRTAP9-8 Missense_Mutation p.Q119H 0.29 tolerated(0.09) probably_damaging(0.982) TCGA-G2-A2EJ-01 17 43138694 43138694 C G NMT1 5'UTR 0.30 TCGA-G2-A2EJ-01 17 59763374 59763374 C G BRIP1 Missense_Mutation p.E910Q 0.47 tolerated(0.2) benign(0.046) TCGA-G2-A2EJ-01 17 60111268 60111268 A T MED13 Missense_Mutation p.L232I 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-G2-A2EJ-01 17 62968706 62968706 G C AMZ2P1 RNA 0.18 TCGA-G2-A2EJ-01 17 66988371 66988371 G A ABCA9 Nonsense_Mutation p.R1221* 0.22 TCGA-G2-A2EJ-01 17 72937560 72937560 G A OTOP3 Missense_Mutation p.R49Q 0.21 tolerated(1) benign(0.001) TCGA-G2-A2EJ-01 17 73263627 73263627 C G MIF4GD Missense_Mutation p.E186Q 0.21 deleterious(0) possibly_damaging(0.883) TCGA-G2-A2EJ-01 17 73265503 73265503 C G MIF4GD Missense_Mutation p.E44Q 0.24 tolerated_low_confidence(0.35) benign(0.005) TCGA-G2-A2EJ-01 17 73887139 73887139 G C TRIM65 Silent p.L425L 0.32 TCGA-G2-A2EJ-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.49 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 17 76113638 76113638 C T TMC6 Silent p.A703A 0.29 TCGA-G2-A2EJ-01 17 77807690 77807690 C T CBX4 3'UTR 0.40 TCGA-G2-A2EJ-01 17 79479123 79479123 C T ACTG1 Missense_Mutation p.E57K 0.65 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-G2-A2EJ-01 17 80788479 80788479 G A ZNF750 Nonsense_Mutation p.R571* 0.40 TCGA-G2-A2EJ-01 18 21508633 21508633 C T LAMA3 Silent p.F2780F 0.40 TCGA-G2-A2EJ-01 18 52571481 52571481 C G CCDC68 3'UTR 0.43 TCGA-G2-A2EJ-01 18 67563226 67563226 C G CD226 Missense_Mutation p.K146N 0.38 tolerated(0.16) benign(0.245) TCGA-G2-A2EJ-01 18 77894028 77894028 G A ADNP2 Silent p.E244E 0.24 TCGA-G2-A2EJ-01 19 10116382 10116382 C G COL5A3 Missense_Mutation p.R149P 0.23 unknown(0) TCGA-G2-A2EJ-01 19 10203458 10203458 G C ANGPTL6 Intron 0.33 TCGA-G2-A2EJ-01 19 10602630 10602630 C T KEAP1 Silent p.V316V 0.20 TCGA-G2-A2EJ-01 19 10602926 10602926 C G KEAP1 Missense_Mutation p.E218Q 0.18 deleterious(0.01) possibly_damaging(0.762) TCGA-G2-A2EJ-01 19 11793471 11793471 G A ZNF833P RNA 0.20 TCGA-G2-A2EJ-01 19 11978815 11978815 C T ZNF439 Missense_Mutation p.R311C 0.22 deleterious(0.03) benign(0.001) TCGA-G2-A2EJ-01 19 18705144 18705144 C T CRLF1 Silent p.K375K 0.27 TCGA-G2-A2EJ-01 19 19407889 19407889 C G SUGP1 Missense_Mutation p.K384N 0.38 deleterious(0) probably_damaging(0.972) TCGA-G2-A2EJ-01 19 2097472 2097472 C T IZUMO4 Silent p.L116L 0.25 TCGA-G2-A2EJ-01 19 36322242 36322242 C T NPHS1 Missense_Mutation p.E1115K 0.38 deleterious(0.03) possibly_damaging(0.905) TCGA-G2-A2EJ-01 19 36526495 36526495 C G THAP8 Splice_Site p.X225_splice 0.24 TCGA-G2-A2EJ-01 19 38851428 38851428 G A CATSPERG Missense_Mutation p.E609K 0.25 tolerated(0.21) possibly_damaging(0.486) TCGA-G2-A2EJ-01 19 39071143 39071143 C T RYR1 Missense_Mutation p.T4882M 0.40 possibly_damaging(0.488) TCGA-G2-A2EJ-01 19 39995950 39995950 G C DLL3 Missense_Mutation p.D318H 0.35 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 19 41522600 41522600 C A CYP2B6 Silent p.L448L 0.42 TCGA-G2-A2EJ-01 19 43097693 43097693 G A CEACAM8 Missense_Mutation p.P142S 0.33 tolerated(0.62) benign(0.015) TCGA-G2-A2EJ-01 19 45998201 45998201 C A RTN2 Nonsense_Mutation p.E48* 0.43 TCGA-G2-A2EJ-01 19 46094676 46094676 G C GPR4 Missense_Mutation p.S150W 0.24 tolerated(0.19) probably_damaging(0.999) TCGA-G2-A2EJ-01 19 46388452 46388452 G C IRF2BP1 Missense_Mutation p.S194C 0.25 deleterious(0.02) benign(0.009) TCGA-G2-A2EJ-01 19 50086939 50086939 G A PRRG2 Missense_Mutation p.E76K 0.29 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 19 51274256 51274256 C G GPR32 Silent p.V133V 0.28 TCGA-G2-A2EJ-01 19 51470546 51470546 C T KLK6 Missense_Mutation p.G26R 0.66 tolerated(0.37) possibly_damaging(0.889) TCGA-G2-A2EJ-01 19 52023405 52023405 G T SIGLEC6 Missense_Mutation p.F431L 0.23 deleterious(0.02) benign(0) TCGA-G2-A2EJ-01 19 52090205 52090205 G A ZNF175 Silent p.L207L 0.23 TCGA-G2-A2EJ-01 19 55086014 55086014 C G LILRA2 Nonsense_Mutation p.S106* 0.31 TCGA-G2-A2EJ-01 19 55607503 55607503 G A PPP1R12C Nonsense_Mutation p.Q357* 0.31 TCGA-G2-A2EJ-01 19 623457 623457 G A POLRMT Silent p.H429H 0.09 TCGA-G2-A2EJ-01 19 8533687 8533687 C T HNRNPM Silent p.F288F 0.33 TCGA-G2-A2EJ-01 1 10363644 10363644 G A KIF1B Intron 0.27 TCGA-G2-A2EJ-01 1 110882013 110882013 G C RBM15 5'UTR 0.29 TCGA-G2-A2EJ-01 1 110882243 110882243 G A RBM15 Silent p.K72K 0.38 TCGA-G2-A2EJ-01 1 1120466 1120466 G C TTLL10 Missense_Mutation p.D460H 0.33 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 1 145281697 145281697 C T NOTCH2NL Silent p.C209C 0.06 TCGA-G2-A2EJ-01 1 146672821 146672821 G C FMO5 Missense_Mutation p.L366V 0.29 deleterious(0.01) possibly_damaging(0.85) TCGA-G2-A2EJ-01 1 146672902 146672902 G C FMO5 Missense_Mutation p.L339V 0.26 deleterious(0.02) possibly_damaging(0.479) TCGA-G2-A2EJ-01 1 147124335 147124335 G A ACP6 Silent p.S266S 0.32 TCGA-G2-A2EJ-01 1 150551448 150551448 G A MCL1 Missense_Mutation p.R187W 0.31 deleterious(0.02) benign(0.049) TCGA-G2-A2EJ-01 1 151131260 151131260 C G TNFAIP8L2 Silent p.L29L 0.43 TCGA-G2-A2EJ-01 1 152188523 152188523 T C HRNR Missense_Mutation p.H1861R 0.08 unknown(0) TCGA-G2-A2EJ-01 1 152882414 152882414 G A IVL Silent p.V47V 0.13 TCGA-G2-A2EJ-01 1 155649255 155649255 C T YY1AP1 Missense_Mutation p.E162K 0.22 deleterious(0.02) benign(0.347) TCGA-G2-A2EJ-01 1 159805141 159805141 A G SLAMF8 3'UTR 0.25 TCGA-G2-A2EJ-01 1 16255003 16255003 C G SPEN Nonsense_Mutation p.Y756* 0.28 TCGA-G2-A2EJ-01 1 183853949 183853949 C T RGL1 Silent p.I311I 0.32 TCGA-G2-A2EJ-01 1 186280724 186280724 G C PRG4 Missense_Mutation p.K1263N 0.36 unknown(0) TCGA-G2-A2EJ-01 1 198668734 198668734 G A PTPRC Missense_Mutation p.D114N 0.28 tolerated_low_confidence(0.4) benign(0.015) TCGA-G2-A2EJ-01 1 200550392 200550392 G A KIF14 Missense_Mutation p.S1091L 0.36 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EJ-01 1 200709041 200709062 GGGCCAAAATCGCCTGCAATCT - CAMSAP2 Frame_Shift_Del p.A30Pfs*67 0.20 TCGA-G2-A2EJ-01 1 203015064 203015064 C G PPFIA4 Silent p.L25L 0.25 TCGA-G2-A2EJ-01 1 212530372 212530372 C G PPP2R5A Missense_Mutation p.F353L 0.32 deleterious(0) possibly_damaging(0.908) TCGA-G2-A2EJ-01 1 230398286 230398286 G A GALNT2 Intron 0.35 TCGA-G2-A2EJ-01 1 231051946 231051946 C T TTC13 Missense_Mutation p.G696R 0.27 tolerated(0.26) probably_damaging(0.994) TCGA-G2-A2EJ-01 1 237838043 237838043 C G RYR2 Missense_Mutation p.D2909E 0.20 benign(0.219) TCGA-G2-A2EJ-01 1 240072502 240072502 G A CHRM3 Missense_Mutation p.R584H 0.19 tolerated(0.09) possibly_damaging(0.66) TCGA-G2-A2EJ-01 1 244572851 244572851 C T ADSS 3'UTR 0.32 TCGA-G2-A2EJ-01 1 248551185 248551185 C A OR2T6 Silent p.I92I 0.14 TCGA-G2-A2EJ-01 1 31351455 31351455 G A SDC3 Intron 0.36 TCGA-G2-A2EJ-01 1 33059171 33059171 G C ZBTB8A Missense_Mutation p.L213F 0.22 possibly_damaging(0.779) TCGA-G2-A2EJ-01 1 33957212 33957212 G A ZSCAN20 Missense_Mutation p.E452K 0.35 tolerated(0.1) benign(0.345) TCGA-G2-A2EJ-01 1 34663406 34663406 C T C1orf94 Missense_Mutation p.P301S 0.30 tolerated(0.59) benign(0.015) TCGA-G2-A2EJ-01 1 40887803 40887803 C G SMAP2 3'UTR 0.41 TCGA-G2-A2EJ-01 1 44402240 44402240 C T ARTN Missense_Mutation p.R164C 0.50 deleterious(0) probably_damaging(0.981) TCGA-G2-A2EJ-01 1 45269884 45269884 T G PLK3 Missense_Mutation p.C436W 0.32 tolerated(0.16) possibly_damaging(0.851) TCGA-G2-A2EJ-01 1 6206323 6206323 C T CHD5 Missense_Mutation p.R584H 0.25 deleterious(0) probably_damaging(0.985) TCGA-G2-A2EJ-01 1 6479312 6479312 G A HES2 Missense_Mutation p.T77M 0.14 tolerated(0.15) benign(0.02) TCGA-G2-A2EJ-01 1 65874363 65874363 C G DNAJC6 Missense_Mutation p.S844C 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-G2-A2EJ-01 1 85816110 85816110 C G DDAH1 Missense_Mutation p.Q195H 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-G2-A2EJ-01 1 93302909 93302909 G C RPL5 Intron 0.26 TCGA-G2-A2EJ-01 20 14307438 14307438 C T FLRT3 Missense_Mutation p.A239T 0.33 tolerated(0.45) benign(0.042) TCGA-G2-A2EJ-01 20 30784504 30784504 G T PLAGL2 Missense_Mutation p.F414L 0.42 tolerated(0.52) possibly_damaging(0.827) TCGA-G2-A2EJ-01 20 3208341 3208341 C T SLC4A11 3'UTR 0.59 TCGA-G2-A2EJ-01 20 35533895 35533896 - A SAMHD1 Frame_Shift_Ins p.L428Sfs*8 0.32 TCGA-G2-A2EJ-01 20 5170443 5170443 G C CDS2 Silent p.L388L 0.21 TCGA-G2-A2EJ-01 20 61143723 61143723 T C C20orf166 5'Flank 0.43 TCGA-G2-A2EJ-01 20 62065242 62065242 G C KCNQ2 Missense_Mutation p.F346L 0.14 tolerated(0.69) benign(0.015) TCGA-G2-A2EJ-01 20 7866353 7866353 C G HAO1 Missense_Mutation p.Q324H 0.42 deleterious(0.02) possibly_damaging(0.448) TCGA-G2-A2EJ-01 20 9561234 9561234 G C PAK7 Missense_Mutation p.S183C 0.40 tolerated_low_confidence(0.08) benign(0.087) TCGA-G2-A2EJ-01 21 11021181 11021181 C T BAGE2 RNA 0.08 TCGA-G2-A2EJ-01 21 34721714 34721714 C G IFNAR1 Silent p.V336V 0.33 TCGA-G2-A2EJ-01 21 45726580 45726580 C G PFKL Silent p.V34V 0.44 TCGA-G2-A2EJ-01 22 19799811 19799811 G A GNB1L Silent p.D138D 0.38 TCGA-G2-A2EJ-01 22 22280017 22280017 C T PPM1F Missense_Mutation p.E304K 0.40 deleterious(0.03) probably_damaging(0.973) TCGA-G2-A2EJ-01 22 31838041 31838041 G T EIF4ENIF1 Missense_Mutation p.S757Y 0.26 tolerated(0.1) benign(0.065) TCGA-G2-A2EJ-01 22 36892254 36892254 T G FOXRED2 Missense_Mutation p.N462H 0.22 deleterious(0.01) benign(0.031) TCGA-G2-A2EJ-01 22 38246010 38246010 C G EIF3L Intron 0.32 TCGA-G2-A2EJ-01 22 41545045 41545045 A G EP300 Missense_Mutation p.M749V 0.27 unknown(0) TCGA-G2-A2EJ-01 22 42209302 42209302 C T CCDC134 Silent p.F115F 0.25 TCGA-G2-A2EJ-01 2 100170988 100170988 C T AFF3 Missense_Mutation p.G1140E 0.36 tolerated(0.21) possibly_damaging(0.537) TCGA-G2-A2EJ-01 2 10712233 10712233 C T NOL10 Silent p.L677L 0.30 TCGA-G2-A2EJ-01 2 108881806 108881806 G A SULT1C3 Silent p.%3D 0.28 TCGA-G2-A2EJ-01 2 109411023 109411023 C G CCDC138 Missense_Mutation p.S141W 0.35 deleterious_low_confidence(0.03) probably_damaging(0.931) TCGA-G2-A2EJ-01 2 112705072 112705072 A G MERTK Missense_Mutation p.I229V 0.24 tolerated(0.17) probably_damaging(0.999) TCGA-G2-A2EJ-01 2 128255777 128255777 C A IWS1 Nonsense_Mutation p.E502* 0.26 TCGA-G2-A2EJ-01 2 167168028 167168028 G A SCN9A Missense_Mutation p.P80L 0.58 deleterious(0) probably_damaging(0.942) TCGA-G2-A2EJ-01 2 179431057 179431057 C A TTN Missense_Mutation p.G26601V 0.29 TCGA-G2-A2EJ-01 2 179622543 179622543 G T TTN Silent p.I3468I 0.57 TCGA-G2-A2EJ-01 2 196698996 196698996 C A DNAH7 Missense_Mutation p.V3012L 0.70 tolerated(0.1) benign(0.047) TCGA-G2-A2EJ-01 2 21228217 21228217 A G APOB Silent p.N3841N 0.31 TCGA-G2-A2EJ-01 2 215875186 215875186 A G ABCA12 Missense_Mutation p.C781R 0.54 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 2 242122315 242122315 C G PPP1R7 3'UTR 0.54 TCGA-G2-A2EJ-01 2 242186257 242186257 C G HDLBP Missense_Mutation p.E620D 0.30 deleterious(0.01) possibly_damaging(0.819) TCGA-G2-A2EJ-01 2 26806690 26806690 C A CIB4 Missense_Mutation p.M135I 0.25 deleterious(0.04) benign(0) TCGA-G2-A2EJ-01 2 27162914 27162914 C T DPYSL5 Silent p.I321I 0.28 TCGA-G2-A2EJ-01 2 32419022 32419022 C G SLC30A6 Missense_Mutation p.R196G 0.26 tolerated(0.09) benign(0.025) TCGA-G2-A2EJ-01 2 37441016 37441016 C G CEBPZ Missense_Mutation p.E846Q 0.41 tolerated(0.08) benign(0.028) TCGA-G2-A2EJ-01 2 46583348 46583348 G A EPAS1 Silent p.L92L 0.28 TCGA-G2-A2EJ-01 2 46583934 46583934 G C EPAS1 Silent p.L147L 0.33 TCGA-G2-A2EJ-01 2 54080793 54080793 G A GPR75 Silent p.F367F 0.18 TCGA-G2-A2EJ-01 2 63175857 63175857 G A EHBP1 Missense_Mutation p.G661R 0.40 tolerated_low_confidence(0.08) benign(0.003) TCGA-G2-A2EJ-01 2 90192954 90192954 A C IGKV1D-13 Missense_Mutation p.M3L 0.23 deleterious(0.02) benign(0.016) TCGA-G2-A2EJ-01 2 9642368 9642368 C T ADAM17 Missense_Mutation p.E528K 0.31 tolerated(0.31) benign(0.192) TCGA-G2-A2EJ-01 3 11356815 11356815 C G ATG7 Intron 0.26 TCGA-G2-A2EJ-01 3 121507259 121507259 G A IQCB1 Missense_Mutation p.R384W 0.18 deleterious(0.05) possibly_damaging(0.841) TCGA-G2-A2EJ-01 3 122646791 122646791 G C SEMA5B Missense_Mutation p.D286E 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EJ-01 3 132185188 132185188 G C DNAJC13 Missense_Mutation p.E672Q 0.20 tolerated(0.37) benign(0.064) TCGA-G2-A2EJ-01 3 142151723 142151723 C G XRN1 Missense_Mutation p.D30H 0.17 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 3 156877198 156877198 A - CCNL1 Frame_Shift_Del p.F125Sfs*22 0.18 TCGA-G2-A2EJ-01 3 158363446 158363446 C T GFM1 Missense_Mutation p.S37L 0.25 deleterious(0.01) benign(0.41) TCGA-G2-A2EJ-01 3 170216488 170216488 C T SLC7A14 Missense_Mutation p.E243K 0.25 tolerated(0.45) benign(0.254) TCGA-G2-A2EJ-01 3 178928074 178928074 G T PIK3CA Missense_Mutation p.G451V 0.23 tolerated(0.05) possibly_damaging(0.779) TCGA-G2-A2EJ-01 3 184001650 184001650 G C ECE2 Missense_Mutation p.Q416H 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-G2-A2EJ-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.18 tolerated(0.19) possibly_damaging(0.569) TCGA-G2-A2EJ-01 3 195925257 195925257 A - ZDHHC19 Frame_Shift_Del p.L280Rfs*73 0.19 TCGA-G2-A2EJ-01 3 46306696 46306696 A G CCR3 Missense_Mutation p.Y37C 0.49 deleterious(0.02) probably_damaging(0.959) TCGA-G2-A2EJ-01 3 46414985 46414985 A G CCR5 Missense_Mutation p.I198V 0.46 tolerated(0.46) benign(0.027) TCGA-G2-A2EJ-01 3 58120443 58120443 G T FLNB Missense_Mutation p.D1570Y 0.42 deleterious(0) possibly_damaging(0.641) TCGA-G2-A2EJ-01 4 104082504 104082504 C G CENPE Silent p.L651L 0.09 TCGA-G2-A2EJ-01 4 106157172 106157172 T G TET2 Silent p.T691T 0.16 TCGA-G2-A2EJ-01 4 114434999 114434999 C G CAMK2D Missense_Mutation p.R297T 0.11 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-G2-A2EJ-01 4 142949964 142949964 C G INPP4B Missense_Mutation p.E916Q 0.67 deleterious(0.01) probably_damaging(0.973) TCGA-G2-A2EJ-01 4 151153948 151153948 G A DCLK2 Missense_Mutation p.V529M 0.58 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EJ-01 4 155226351 155226351 G A DCHS2 Missense_Mutation p.P1310S 0.51 tolerated(0.1) benign(0.422) TCGA-G2-A2EJ-01 4 170674911 170674911 C T C4orf27 Missense_Mutation p.E42K 0.61 tolerated(0.26) benign(0.083) TCGA-G2-A2EJ-01 4 187525001 187525001 G C FAT1 Nonsense_Mutation p.S3560* 0.60 TCGA-G2-A2EJ-01 4 47538490 47538491 - T ATP10D Frame_Shift_Ins p.N354Qfs*6 0.45 TCGA-G2-A2EJ-01 4 71255498 71255498 G C SMR3B Missense_Mutation p.R58T 0.40 deleterious_low_confidence(0) unknown(0) TCGA-G2-A2EJ-01 4 89671055 89671055 C T FAM13A Missense_Mutation p.R649Q 0.08 deleterious(0) probably_damaging(0.991) TCGA-G2-A2EJ-01 4 95561504 95561504 A C PDLIM5 Missense_Mutation p.T425P 0.42 tolerated(1) benign(0) TCGA-G2-A2EJ-01 5 101596009 101596009 G C SLCO4C1 Missense_Mutation p.Q346E 0.53 tolerated(0.53) benign(0.292) TCGA-G2-A2EJ-01 5 107216802 107216802 C T FBXL17 Missense_Mutation p.G634E 0.22 deleterious(0) probably_damaging(0.976) TCGA-G2-A2EJ-01 5 108516519 108516519 G A FER Missense_Mutation p.R707H 0.27 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 5 131819667 131819667 G C IRF1 Missense_Mutation p.I318M 0.26 tolerated(0.57) benign(0.026) TCGA-G2-A2EJ-01 5 13916475 13916475 G C DNAH5 Missense_Mutation p.I393M 0.15 possibly_damaging(0.86) TCGA-G2-A2EJ-01 5 140755384 140755384 G C PCDHGA6 Silent p.A578A 0.29 TCGA-G2-A2EJ-01 5 140890566 140890566 G C PCDHGB6 Missense_Mutation p.L873F 0.22 deleterious(0) possibly_damaging(0.753) TCGA-G2-A2EJ-01 5 14746024 14746024 G A ANKH Silent p.Y290Y 0.35 TCGA-G2-A2EJ-01 5 148709287 148709287 G T AFAP1L1 Missense_Mutation p.L623F 0.31 deleterious(0.05) probably_damaging(0.924) TCGA-G2-A2EJ-01 5 179264894 179264894 G A SQSTM1 3'UTR 0.36 TCGA-G2-A2EJ-01 5 31535946 31535946 G C C5orf22 Missense_Mutation p.R108T 0.25 tolerated(0.61) benign(0.026) TCGA-G2-A2EJ-01 5 35954391 35954391 G A UGT3A1 Silent p.L495L 0.15 TCGA-G2-A2EJ-01 5 36671303 36671303 G A SLC1A3 Silent p.V164V 0.27 TCGA-G2-A2EJ-01 5 39306727 39306727 T C C9 Missense_Mutation p.S470G 0.28 tolerated(0.16) benign(0.02) TCGA-G2-A2EJ-01 5 5182156 5182156 G T ADAMTS16 Splice_Site p.X168_splice 0.20 TCGA-G2-A2EJ-01 5 60188838 60188838 C A ERCC8 Intron 0.40 TCGA-G2-A2EJ-01 5 71654282 71654282 G A PTCD2 3'UTR 0.25 TCGA-G2-A2EJ-01 5 90049511 90049511 G C GPR98 Missense_Mutation p.E3748Q 0.18 benign(0.007) TCGA-G2-A2EJ-01 6 112035566 112035566 G C FYN Missense_Mutation p.Q110E 0.17 tolerated(0.45) probably_damaging(0.994) TCGA-G2-A2EJ-01 6 116442126 116442126 C G COL10A1 Missense_Mutation p.D385H 0.12 tolerated(0.11) unknown(0) TCGA-G2-A2EJ-01 6 117662723 117662723 G C ROS1 Missense_Mutation p.S1581C 0.18 deleterious(0) possibly_damaging(0.896) TCGA-G2-A2EJ-01 6 146708053 146708053 T A GRM1 Missense_Mutation p.C544S 0.19 deleterious(0.03) probably_damaging(1) TCGA-G2-A2EJ-01 6 151203955 151203955 C T MTHFD1L Nonsense_Mutation p.Q159* 0.22 TCGA-G2-A2EJ-01 6 151687786 151687786 C T ZBTB2 Missense_Mutation p.D139N 0.30 tolerated(0.07) probably_damaging(0.977) TCGA-G2-A2EJ-01 6 15496706 15496706 C T JARID2 Missense_Mutation p.S417L 0.24 tolerated_low_confidence(0.21) benign(0.004) TCGA-G2-A2EJ-01 6 158074650 158074650 G A ZDHHC14 Silent p.Q353Q 0.29 TCGA-G2-A2EJ-01 6 159166530 159166530 G C SYTL3 Missense_Mutation p.D292H 0.23 deleterious(0.04) benign(0.163) TCGA-G2-A2EJ-01 6 159166673 159166673 G C SYTL3 Missense_Mutation p.K339N 0.19 deleterious(0.02) possibly_damaging(0.58) TCGA-G2-A2EJ-01 6 160169273 160169273 G C WTAP Silent p.L108L 0.21 TCGA-G2-A2EJ-01 6 30166907 30166907 G A TRIM26 5'UTR 0.12 TCGA-G2-A2EJ-01 6 31685471 31685471 C G LY6G6D Missense_Mutation p.L98V 0.25 tolerated(1) possibly_damaging(0.567) TCGA-G2-A2EJ-01 6 33243622 33243622 G A RPS18 Missense_Mutation p.D51N 0.30 tolerated(0.07) benign(0.191) TCGA-G2-A2EJ-01 6 83075978 83075978 G C TPBG 3'UTR 0.23 TCGA-G2-A2EJ-01 6 90039588 90039588 C T UBE2J1 Missense_Mutation p.R256Q 0.26 tolerated(0.09) possibly_damaging(0.559) TCGA-G2-A2EJ-01 6 90394614 90394614 G A MDN1 Missense_Mutation p.P3937L 0.32 probably_damaging(0.985) TCGA-G2-A2EJ-01 6 97634396 97634396 G A MMS22L Missense_Mutation p.S737L 0.26 tolerated(0.05) benign(0.073) TCGA-G2-A2EJ-01 7 117431626 117431626 G A CTTNBP2 Missense_Mutation p.P542S 0.26 deleterious(0) probably_damaging(1) TCGA-G2-A2EJ-01 7 117450981 117450981 G C CTTNBP2 Missense_Mutation p.F84L 0.23 tolerated(0.11) probably_damaging(0.997) TCGA-G2-A2EJ-01 7 128489029 128489029 C T FLNC Silent p.L1640L 0.34 TCGA-G2-A2EJ-01 7 128614995 128614995 G C TNPO3 Missense_Mutation p.Q734E 0.29 tolerated(0.96) benign(0.01) TCGA-G2-A2EJ-01 7 130038679 130038679 C T CEP41 3'UTR 0.29 TCGA-G2-A2EJ-01 7 130038848 130038848 C G CEP41 Missense_Mutation p.E336Q 0.29 deleterious(0.03) benign(0.032) TCGA-G2-A2EJ-01 7 20199869 20199869 C T MACC1 Splice_Site p.X39_splice 0.29 TCGA-G2-A2EJ-01 7 23571441 23571441 C T TRA2A Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) unknown(0) TCGA-G2-A2EJ-01 7 31378699 31378699 C T NEUROD6 Missense_Mutation p.E62K 0.38 tolerated(0.4) benign(0.005) TCGA-G2-A2EJ-01 7 31378712 31378712 C T NEUROD6 Silent p.E57E 0.41 TCGA-G2-A2EJ-01 7 38431490 38431490 G A AMPH Silent p.S579S 0.33 TCGA-G2-A2EJ-01 7 57193755 57193755 T A ZNF479 Nonsense_Mutation p.K78* 0.23 TCGA-G2-A2EJ-01 7 75190635 75190635 C G HIP1 Missense_Mutation p.E397Q 0.22 deleterious(0.02) benign(0.145) TCGA-G2-A2EJ-01 7 76982908 76982908 G T GSAP Silent p.L463L 0.25 TCGA-G2-A2EJ-01 7 82390090 82390090 C G PCLO Silent p.V5051V 0.31 TCGA-G2-A2EJ-01 7 86548627 86548627 C T KIAA1324L Splice_Site p.X467_splice 0.42 TCGA-G2-A2EJ-01 7 89887468 89887468 G A C7orf63 Silent p.Q79Q 0.28 TCGA-G2-A2EJ-01 7 94175012 94175012 C T CASD1 Silent p.N544N 0.33 TCGA-G2-A2EJ-01 7 97821646 97821646 C T LMTK2 Silent p.H623H 0.25 TCGA-G2-A2EJ-01 7 99158255 99158255 G C ZNF655 Missense_Mutation p.E25Q 0.31 deleterious(0.02) possibly_damaging(0.607) TCGA-G2-A2EJ-01 8 133153445 133153445 A C KCNQ3 Missense_Mutation p.L466V 0.28 deleterious(0.02) benign(0.209) TCGA-G2-A2EJ-01 8 142437047 142437047 G A PTP4A3 Silent p.P69P 0.38 TCGA-G2-A2EJ-01 8 144808670 144808670 G A FAM83H Silent p.F987F 0.17 TCGA-G2-A2EJ-01 8 144991585 144991585 G T PLEC Missense_Mutation p.S4272Y 0.31 probably_damaging(0.999) TCGA-G2-A2EJ-01 8 145002057 145002057 G C PLEC Missense_Mutation p.L1259V 0.44 unknown(0) TCGA-G2-A2EJ-01 8 53084872 53084872 C T ST18 Silent p.Q183Q 0.28 TCGA-G2-A2EJ-01 8 68112663 68112663 G A ARFGEF1 Silent p.L1785L 0.23 TCGA-G2-A2EJ-01 8 69030845 69030845 C T PREX2 Silent p.C1129C 0.30 TCGA-G2-A2EJ-01 8 86041588 86041588 C A LRRCC1 Missense_Mutation p.Q534K 0.25 tolerated(0.25) possibly_damaging(0.776) TCGA-G2-A2EJ-01 9 101125057 101125057 G C GABBR2 Missense_Mutation p.I611M 0.17 deleterious(0) probably_damaging(0.944) TCGA-G2-A2EJ-01 9 103092428 103092428 G C TEX10 Missense_Mutation p.S425C 0.29 deleterious(0.05) possibly_damaging(0.541) TCGA-G2-A2EJ-01 9 107298443 107298443 C A OR13C3 Missense_Mutation p.A218S 0.25 deleterious(0.02) probably_damaging(1) TCGA-G2-A2EJ-01 9 115567234 115567234 G C SNX30 Missense_Mutation p.R112T 0.28 deleterious(0) possibly_damaging(0.714) TCGA-G2-A2EJ-01 9 115652749 115652749 C G SLC46A2 Missense_Mutation p.Q71H 0.43 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 9 117122258 117122258 C G AKNA Missense_Mutation p.E737Q 0.17 deleterious(0.01) possibly_damaging(0.827) TCGA-G2-A2EJ-01 9 123476225 123476225 G C MEGF9 Missense_Mutation p.Q138E 0.37 tolerated_low_confidence(0.21) benign(0.002) TCGA-G2-A2EJ-01 9 126128232 126128232 C T CRB2 Missense_Mutation p.S152L 0.35 deleterious(0) unknown(0) TCGA-G2-A2EJ-01 9 130984548 130984548 G C DNM1 Missense_Mutation p.E308Q 0.22 tolerated(0.26) benign(0.155) TCGA-G2-A2EJ-01 9 131115460 131115460 G C SLC27A4 Missense_Mutation p.E382Q 0.24 deleterious(0) possibly_damaging(0.878) TCGA-G2-A2EJ-01 9 131504959 131504959 G A ZER1 Silent p.Y475Y 0.42 TCGA-G2-A2EJ-01 9 19050318 19050318 G C RRAGA Missense_Mutation p.E221Q 0.23 tolerated(0.28) benign(0.009) TCGA-G2-A2EJ-01 9 328082 328082 C T DOCK8 Missense_Mutation p.H319Y 0.14 deleterious(0.01) benign(0.021) TCGA-G2-A2EJ-01 9 33676789 33676789 C G PTENP1 RNA 0.21 TCGA-G2-A2EJ-01 9 35561306 35561306 C T RUSC2 Missense_Mutation p.S1493F 0.23 tolerated(0.1) benign(0.228) TCGA-G2-A2EJ-01 9 36110040 36110040 G A RECK Missense_Mutation p.E618K 0.21 tolerated(0.54) benign(0.034) TCGA-G2-A2EJ-01 9 4117765 4117766 - A GLIS3 Intron 0.40 TCGA-G2-A2EJ-01 9 80881596 80881596 C G CEP78 Missense_Mutation p.S696C 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.521) TCGA-G2-A2EJ-01 9 82335206 82335206 G A TLE4 Silent p.V612V 0.22 TCGA-G2-A2EJ-01 9 95298220 95298220 G A ECM2 5'UTR 0.43 TCGA-G2-A2EJ-01 9 95482616 95482616 G C BICD2 Missense_Mutation p.S343C 0.42 deleterious(0.05) benign(0.099) TCGA-G2-A2EJ-01 9 95482948 95482948 G T BICD2 Silent p.L232L 0.39 TCGA-G2-A2EJ-01 X 101382355 101382355 A G TCEAL2 Missense_Mutation p.K185E 0.25 deleterious(0) benign(0.218) TCGA-G2-A2EJ-01 X 106893251 106893251 G T PRPS1 Missense_Mutation p.V316F 0.31 deleterious(0) benign(0.111) TCGA-G2-A2EJ-01 X 107975913 107975913 C T IRS4 Missense_Mutation p.R1221Q 0.28 tolerated_low_confidence(0.36) unknown(0) TCGA-G2-A2EJ-01 X 119077327 119077327 C G NKAP Missense_Mutation p.R81T 0.38 deleterious(0.01) possibly_damaging(0.714) TCGA-G2-A2EJ-01 X 120182413 120182413 T - GLUD2 Frame_Shift_Del p.L293* 0.26 TCGA-G2-A2EJ-01 X 120182792 120182792 G T GLUD2 Silent p.L418L 0.23 TCGA-G2-A2EJ-01 X 125685766 125685766 C A DCAF12L1 Nonsense_Mutation p.E276* 0.29 TCGA-G2-A2EJ-01 X 129148662 129148662 G A BCORL1 Silent p.Q638Q 0.30 TCGA-G2-A2EJ-01 X 129370577 129370577 G C ZNF280C Missense_Mutation p.S177C 0.26 deleterious(0.02) benign(0.224) TCGA-G2-A2EJ-01 X 135572431 135572431 C G BRS3 Missense_Mutation p.R192G 0.41 tolerated(0.56) benign(0.003) TCGA-G2-A2EJ-01 X 150349467 150349467 C G GPR50 Missense_Mutation p.S471C 0.33 deleterious_low_confidence(0.04) benign(0.005) TCGA-G2-A2EJ-01 X 150349531 150349531 C A GPR50 Missense_Mutation p.F492L 0.31 tolerated_low_confidence(0.35) benign(0.002) TCGA-G2-A2EJ-01 X 152818716 152818716 G T ATP2B3 Missense_Mutation p.V683L 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A2EJ-01 X 153048313 153048313 G A SRPK3 Missense_Mutation p.V188M 0.40 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EJ-01 X 153578566 153578566 G A FLNA Missense_Mutation p.A2389V 0.28 tolerated(0.06) benign(0.264) TCGA-G2-A2EJ-01 X 153880854 153880854 C T CTAG2 Silent p.R107R 0.35 TCGA-G2-A2EJ-01 X 23898967 23898967 C T APOO Missense_Mutation p.D38N 0.21 tolerated(0.22) benign(0.011) TCGA-G2-A2EJ-01 X 27766328 27766328 C G DCAF8L2 Missense_Mutation p.A439G 0.35 tolerated(0.06) benign(0.329) TCGA-G2-A2EJ-01 X 2836237 2836237 G A ARSD Silent p.S157S 0.33 TCGA-G2-A2EJ-01 X 34149301 34149301 C T FAM47A Silent p.A365A 0.33 TCGA-G2-A2EJ-01 X 34962542 34962542 C T FAM47B Missense_Mutation p.R532C 0.29 deleterious(0.05) benign(0.002) TCGA-G2-A2EJ-01 X 35974113 35974113 G A CXorf22 Missense_Mutation p.G404S 0.23 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 X 50339780 50339780 C G SHROOM4 Missense_Mutation p.R1466P 0.43 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EJ-01 X 52825556 52825556 G C SPANXN5 Nonsense_Mutation p.S64* 0.28 TCGA-G2-A2EJ-01 X 54777522 54777522 C A ITIH6 Missense_Mutation p.R1215M 0.28 deleterious(0.01) possibly_damaging(0.714) TCGA-G2-A2EJ-01 X 63412575 63412575 C T AMER1 Missense_Mutation p.E198K 0.20 deleterious(0.03) benign(0.015) TCGA-G2-A2EJ-01 X 63488786 63488786 C G MTMR8 Silent p.L582L 0.43 TCGA-G2-A2EJ-01 X 70471043 70471043 C G ZMYM3 Missense_Mutation p.D255H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-G2-A2EJ-01 X 70471052 70471052 C T ZMYM3 Missense_Mutation p.E252K 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-G2-A2EJ-01 X 70787373 70787373 T C OGT Silent p.S871S 0.30 TCGA-G2-A2EJ-01 X 78216602 78216602 G T P2RY10 Missense_Mutation p.L195F 0.24 tolerated(0.29) possibly_damaging(0.615) TCGA-G2-A2EJ-01 X 88008581 88008581 G T CPXCR1 Missense_Mutation p.A56S 0.16 tolerated(0.96) benign(0.002) TCGA-G2-A2EJ-01 X 91873589 91873589 C T PCDH11X Missense_Mutation p.H1232Y 0.29 tolerated_low_confidence(0.59) benign(0.022) TCGA-G2-A2EK-01 10 108380301 108380301 T C SORCS1 Missense_Mutation p.H894R 0.34 deleterious(0.01) benign(0.096) TCGA-G2-A2EK-01 10 134563026 134563026 C G INPP5A Silent p.L246L 0.33 TCGA-G2-A2EK-01 10 15145354 15145354 G A RPP38 Missense_Mutation p.R14H 0.27 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EK-01 10 72026088 72026088 C T NPFFR1 Missense_Mutation p.E23K 0.15 tolerated(0.64) benign(0.001) TCGA-G2-A2EK-01 10 98078110 98078110 G A DNTT Missense_Mutation p.D69N 0.40 tolerated(0.08) benign(0.22) TCGA-G2-A2EK-01 11 32994985 32994985 G A QSER1 Missense_Mutation p.D1621N 0.43 tolerated(0.12) benign(0.099) TCGA-G2-A2EK-01 11 88911384 88911384 C T TYR Missense_Mutation p.T88I 0.20 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EK-01 12 105381948 105381948 T A C12orf45 Missense_Mutation p.I40K 0.39 deleterious(0) possibly_damaging(0.746) TCGA-G2-A2EK-01 12 4919301 4919301 G A KCNA6 Missense_Mutation p.G32S 0.33 tolerated(0.83) benign(0.058) TCGA-G2-A2EK-01 12 53776442 53776442 C G SP1 Silent p.P237P 0.27 TCGA-G2-A2EK-01 13 36026232 36026232 C T NBEA Missense_Mutation p.T2103M 0.44 tolerated(0.11) benign(0.411) TCGA-G2-A2EK-01 14 37892073 37892073 C T MIPOL1 Missense_Mutation p.S317F 0.36 tolerated(0.1) benign(0.038) TCGA-G2-A2EK-01 14 55836491 55836491 C T ATG14 Missense_Mutation p.R442Q 0.25 tolerated(0.11) benign(0.007) TCGA-G2-A2EK-01 14 65259855 65259855 C T SPTB Silent p.Q842Q 0.19 TCGA-G2-A2EK-01 14 76186104 76186104 A G TTLL5 Missense_Mutation p.Y290C 0.07 deleterious(0) benign(0.394) TCGA-G2-A2EK-01 15 20645758 20645758 G A HERC2P3 RNA 0.14 TCGA-G2-A2EK-01 15 28467317 28467317 G C HERC2 Missense_Mutation p.Q1837E 0.19 benign(0.002) TCGA-G2-A2EK-01 15 40914878 40914878 G C CASC5 Missense_Mutation p.E832Q 0.24 deleterious(0.03) probably_damaging(0.915) TCGA-G2-A2EK-01 15 65988761 65988761 C T DENND4A Missense_Mutation p.V1008I 0.15 deleterious(0.02) benign(0.018) TCGA-G2-A2EK-01 16 2029466 2029466 G T NOXO1 Missense_Mutation p.R265S 0.17 tolerated(0.18) benign(0.017) TCGA-G2-A2EK-01 16 28948412 28948412 G A CD19 Missense_Mutation p.V385I 0.16 tolerated(0.26) possibly_damaging(0.899) TCGA-G2-A2EK-01 16 57416628 57416628 C T CX3CL1 Missense_Mutation p.S293L 0.25 deleterious(0) possibly_damaging(0.536) TCGA-G2-A2EK-01 16 77465414 77465414 C G ADAMTS18 Missense_Mutation p.Q91H 0.27 tolerated(0.16) benign(0.005) TCGA-G2-A2EK-01 17 33769076 33769076 G C SLFN13 Silent p.L476L 0.13 TCGA-G2-A2EK-01 17 42286824 42286824 C T UBTF Missense_Mutation p.G601S 0.18 tolerated(0.27) probably_damaging(0.938) TCGA-G2-A2EK-01 17 74448878 74448878 G T UBE2O Missense_Mutation p.P116T 0.18 tolerated(0.09) benign(0.021) TCGA-G2-A2EK-01 17 74729883 74729883 C T METTL23 3'UTR 0.45 TCGA-G2-A2EK-01 17 78166304 78166304 C G CARD14 Silent p.L414L 0.24 TCGA-G2-A2EK-01 19 23543307 23543307 G A ZNF91 Missense_Mutation p.P825L 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-G2-A2EK-01 19 4357557 4357557 C G MPND Missense_Mutation p.P404R 0.26 deleterious(0.02) probably_damaging(0.961) TCGA-G2-A2EK-01 19 7675446 7675446 C T CAMSAP3 Missense_Mutation p.P309L 0.28 tolerated(0.14) probably_damaging(0.917) TCGA-G2-A2EK-01 1 151655862 151655862 A G SNX27 Missense_Mutation p.K394E 0.26 tolerated(0.16) benign(0.431) TCGA-G2-A2EK-01 1 163117208 163117208 C G RGS5 Missense_Mutation p.R161T 0.30 deleterious(0.02) possibly_damaging(0.78) TCGA-G2-A2EK-01 1 186024541 186024541 C T HMCN1 Silent p.T2293T 0.34 TCGA-G2-A2EK-01 1 19653755 19653755 C G PQLC2 Missense_Mutation p.S218C 0.10 tolerated(0.15) benign(0.033) TCGA-G2-A2EK-01 1 202549724 202549724 G C PPP1R12B 3'UTR 0.24 TCGA-G2-A2EK-01 1 235952067 235952067 G A LYST Missense_Mutation p.S1541L 0.34 deleterious(0) benign(0.179) TCGA-G2-A2EK-01 1 236716940 236716940 A G HEATR1 Missense_Mutation p.S2060P 0.32 deleterious(0.02) probably_damaging(0.969) TCGA-G2-A2EK-01 1 236716964 236716964 A G HEATR1 Missense_Mutation p.F2052L 0.34 tolerated(0.29) benign(0.085) TCGA-G2-A2EK-01 1 248436878 248436878 G A OR2T33 Missense_Mutation p.A80V 0.23 tolerated(0.19) benign(0.132) TCGA-G2-A2EK-01 1 27100151 27100152 - G ARID1A Frame_Shift_Ins p.M1318Dfs*5 0.24 TCGA-G2-A2EK-01 1 32797278 32797278 C T HDAC1 Nonsense_Mutation p.Q364* 0.23 TCGA-G2-A2EK-01 1 47583503 47583503 G T CYP4Z1 Missense_Mutation p.R472L 0.35 deleterious(0.01) probably_damaging(0.913) TCGA-G2-A2EK-01 20 58545166 58545166 C T CDH26 Silent p.S52S 0.17 TCGA-G2-A2EK-01 20 60697745 60697745 C T LSM14B Missense_Mutation p.P8L 0.15 deleterious(0.02) benign(0.051) TCGA-G2-A2EK-01 21 46914788 46914788 C T COL18A1 Missense_Mutation p.R978W 0.25 probably_damaging(0.998) TCGA-G2-A2EK-01 22 33780235 33780235 C G LARGE Missense_Mutation p.W316C 0.27 deleterious(0) probably_damaging(0.982) TCGA-G2-A2EK-01 22 37699360 37699360 C T CYTH4 Missense_Mutation p.R205W 0.14 deleterious(0.04) probably_damaging(0.967) TCGA-G2-A2EK-01 22 50718455 50718455 G C PLXNB2 Missense_Mutation p.I1407M 0.17 deleterious(0.01) probably_damaging(1) TCGA-G2-A2EK-01 22 50968116 50968116 C T TYMP Missense_Mutation p.G8E 0.14 tolerated_low_confidence(0.25) probably_damaging(0.969) TCGA-G2-A2EK-01 2 79384297 79384297 C A REG3A 3'UTR 0.24 TCGA-G2-A2EK-01 2 80772113 80772113 A G CTNNA2 Missense_Mutation p.N433D 0.23 deleterious(0.04) possibly_damaging(0.732) TCGA-G2-A2EK-01 2 86258591 86258591 C G POLR1A Silent p.L1480L 0.24 TCGA-G2-A2EK-01 2 86258707 86258707 C T POLR1A Missense_Mutation p.D1442N 0.25 tolerated(0.6) benign(0.007) TCGA-G2-A2EK-01 2 86258743 86258743 C A POLR1A Nonsense_Mutation p.E1430* 0.24 TCGA-G2-A2EK-01 2 95952224 95952224 C T PROM2 Intron 0.28 TCGA-G2-A2EK-01 3 119305346 119305346 G A ADPRH Silent p.G171G 0.23 TCGA-G2-A2EK-01 3 146251317 146251317 G T PLSCR1 Missense_Mutation p.H12N 0.18 deleterious_low_confidence(0.02) benign(0.017) TCGA-G2-A2EK-01 3 14862507 14862507 G A FGD5 Silent p.P643P 0.30 TCGA-G2-A2EK-01 3 49397710 49397710 C T RHOA Missense_Mutation p.E172K 0.18 deleterious(0.05) benign(0.251) TCGA-G2-A2EK-01 4 13601146 13601146 C A BOD1L1 Nonsense_Mutation p.E2460* 0.23 TCGA-G2-A2EK-01 4 13601587 13601587 C T BOD1L1 Missense_Mutation p.E2313K 0.62 possibly_damaging(0.521) TCGA-G2-A2EK-01 4 138451062 138451062 C G PCDH18 Missense_Mutation p.E727D 0.34 tolerated(0.17) probably_damaging(0.97) TCGA-G2-A2EK-01 4 139993174 139993174 A C ELF2 Intron 0.30 TCGA-G2-A2EK-01 5 1214154 1214154 C G SLC6A19 Missense_Mutation p.I287M 0.22 deleterious(0) probably_damaging(0.995) TCGA-G2-A2EK-01 5 140188974 140188974 G A PCDHA4 Silent p.P734P 0.31 TCGA-G2-A2EK-01 5 140229486 140229486 C T PCDHA9 Missense_Mutation p.P469L 0.30 deleterious_low_confidence(0.01) benign(0.077) TCGA-G2-A2EK-01 5 140476332 140476332 C T PCDHB2 Missense_Mutation p.P653L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.909) TCGA-G2-A2EK-01 5 140503159 140503159 G A PCDHB4 Missense_Mutation p.E527K 0.32 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-G2-A2EK-01 5 140626734 140626734 C T PCDHB15 Missense_Mutation p.R530C 0.29 deleterious_low_confidence(0.02) benign(0.201) TCGA-G2-A2EK-01 5 33997274 33997274 T C AMACR Intron 0.20 TCGA-G2-A2EK-01 5 55252048 55252048 C G IL6ST Missense_Mutation p.E358Q 0.16 tolerated(0.06) benign(0.011) TCGA-G2-A2EK-01 6 109691643 109691643 G C CD164 Missense_Mutation p.S133C 0.15 deleterious(0.02) probably_damaging(0.963) TCGA-G2-A2EK-01 6 138198247 138198247 G A TNFAIP3 Silent p.R280R 0.23 TCGA-G2-A2EK-01 6 27782369 27782369 C T HIST1H2AJ Silent p.V50V 0.17 TCGA-G2-A2EK-01 6 31760629 31760629 C T VARS Missense_Mutation p.R189H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-G2-A2EK-01 6 46969267 46969267 G A GPR110 Missense_Mutation p.S877L 0.30 tolerated(0.38) benign(0.001) TCGA-G2-A2EK-01 7 102760122 102760123 - A NAPEPLD Frame_Shift_Ins p.A282Rfs*11 0.24 TCGA-G2-A2EK-01 7 138310792 138310792 G A SVOPL Silent p.A395A 0.07 TCGA-G2-A2EK-01 7 23164704 23164704 G A KLHL7 Missense_Mutation p.D119N 0.34 tolerated(1) benign(0.003) TCGA-G2-A2EK-01 7 84751133 84751133 T C SEMA3D Silent p.L25L 0.37 TCGA-G2-A2EK-01 9 112145729 112145729 G A PTPN3 Nonsense_Mutation p.R786* 0.38 TCGA-G2-A2EK-01 9 135866388 135866388 G A GFI1B Missense_Mutation p.R315H 0.05 deleterious(0) probably_damaging(0.991) TCGA-G2-A2EK-01 9 140811877 140811877 C G CACNA1B Silent p.L320L 0.41 TCGA-G2-A2EK-01 9 22006036 22006036 G A CDKN2B Missense_Mutation p.R123W 0.33 deleterious(0.01) possibly_damaging(0.849) TCGA-G2-A2EK-01 X 44870260 44870260 C T KDM6A Nonsense_Mutation p.Q147* 0.67 TCGA-G2-A2EL-01 10 105350216 105350216 C G NEURL1 3'UTR 0.60 TCGA-G2-A2EL-01 10 105831838 105831838 C G COL17A1 Splice_Site p.X139_splice 0.38 TCGA-G2-A2EL-01 10 115664742 115664742 C A NHLRC2 Nonsense_Mutation p.S624* 0.45 TCGA-G2-A2EL-01 10 121586170 121586170 C T INPP5F Silent p.I759I 0.44 TCGA-G2-A2EL-01 10 127541845 127541845 C G BCCIP 3'UTR 0.53 TCGA-G2-A2EL-01 10 135107159 135107159 C A TUBGCP2 Missense_Mutation p.R272L 0.38 deleterious(0) probably_damaging(0.915) TCGA-G2-A2EL-01 10 38406358 38406358 C G ZNF37A Missense_Mutation p.F93L 0.93 tolerated(0.66) benign(0) TCGA-G2-A2EL-01 10 89127109 89127109 C G NUTM2D Missense_Mutation p.P552A 0.33 tolerated_low_confidence(0.1) benign(0.024) TCGA-G2-A2EL-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.92 TCGA-G2-A2EL-01 11 117105073 117105073 G A RNF214 Missense_Mutation p.E29K 0.50 deleterious_low_confidence(0.01) benign(0.114) TCGA-G2-A2EL-01 11 119003250 119003250 G C HINFP Missense_Mutation p.E241Q 0.46 deleterious(0) possibly_damaging(0.641) TCGA-G2-A2EL-01 11 120744829 120744829 G A GRIK4 Missense_Mutation p.E321K 0.41 tolerated(0.05) benign(0.416) TCGA-G2-A2EL-01 11 125481355 125481355 G A STT3A Missense_Mutation p.D384N 0.43 tolerated(0.06) benign(0.108) TCGA-G2-A2EL-01 11 134073692 134073692 T C NCAPD3 Missense_Mutation p.K442R 0.43 tolerated(0.24) benign(0.026) TCGA-G2-A2EL-01 11 209187 209187 G A RIC8A Intron 0.48 TCGA-G2-A2EL-01 11 209369 209369 G A RIC8A Intron 0.51 TCGA-G2-A2EL-01 11 34680084 34680084 G C EHF Silent p.P226P 0.47 TCGA-G2-A2EL-01 11 43471676 43471676 C G TTC17 Missense_Mutation p.A944G 0.49 tolerated(0.36) benign(0.022) TCGA-G2-A2EL-01 11 47182742 47182742 G - C11orf49 Splice_Site p.X274_splice 0.33 TCGA-G2-A2EL-01 11 5475265 5475265 G C OR51I2 Missense_Mutation p.D183H 0.44 deleterious(0) probably_damaging(1) TCGA-G2-A2EL-01 11 59271954 59271954 G C OR4D11 Missense_Mutation p.K302N 0.44 tolerated(0.31) benign(0.097) TCGA-G2-A2EL-01 11 62415620 62415620 G A INTS5 Silent p.L644L 0.50 TCGA-G2-A2EL-01 11 62444039 62444039 G C UBXN1 3'UTR 0.30 TCGA-G2-A2EL-01 11 65271750 65271750 G A MALAT1 RNA 0.57 TCGA-G2-A2EL-01 11 65272556 65272556 G C MALAT1 RNA 0.54 TCGA-G2-A2EL-01 11 66108729 66108729 C T BRMS1 Silent p.T102T 0.52 TCGA-G2-A2EL-01 11 66812099 66812099 C T SYT12 Silent p.L291L 0.53 TCGA-G2-A2EL-01 11 7063621 7063621 G A NLRP14 Missense_Mutation p.D122N 0.40 tolerated(0.26) benign(0.408) TCGA-G2-A2EL-01 11 7064529 7064529 G A NLRP14 Silent p.L424L 0.49 TCGA-G2-A2EL-01 11 7079545 7079545 G A NLRP14 Missense_Mutation p.E833K 0.50 tolerated(0.13) benign(0.063) TCGA-G2-A2EL-01 11 77330668 77330668 C G CLNS1A 3'UTR 0.43 TCGA-G2-A2EL-01 11 77921319 77921319 C T USP35 Silent p.L806L 0.44 TCGA-G2-A2EL-01 11 7960813 7960813 G C OR10A3 Silent p.L85L 0.38 TCGA-G2-A2EL-01 12 122748132 122748132 C T VPS33A Missense_Mutation p.E95K 0.49 tolerated(0.12) benign(0.008) TCGA-G2-A2EL-01 12 15656841 15656841 G C PTPRO Splice_Site p.X369_splice 0.23 TCGA-G2-A2EL-01 12 22086837 22086837 T C ABCC9 Missense_Mutation p.K55E 0.44 deleterious(0.04) benign(0.027) TCGA-G2-A2EL-01 12 42554311 42554311 G A YAF2 3'UTR 0.71 TCGA-G2-A2EL-01 12 49431596 49431596 C G KMT2D Missense_Mutation p.E3181D 0.55 possibly_damaging(0.708) TCGA-G2-A2EL-01 12 49432123 49432123 C T KMT2D Missense_Mutation p.D3006N 0.45 probably_damaging(0.989) TCGA-G2-A2EL-01 12 50642451 50642451 C A LIMA1 Missense_Mutation p.K28N 0.45 deleterious(0) probably_damaging(0.933) TCGA-G2-A2EL-01 12 51279033 51279033 C T TMPRSS12 Silent p.N219N 0.40 TCGA-G2-A2EL-01 12 54422653 54422653 G C HOXC6 Missense_Mutation p.Q116H 0.39 deleterious(0.05) possibly_damaging(0.744) TCGA-G2-A2EL-01 12 54903724 54903724 C T NCKAP1L Silent p.L230L 0.50 TCGA-G2-A2EL-01 12 56721370 56721370 C G PAN2 Missense_Mutation p.D233H 0.52 deleterious(0.04) probably_damaging(0.945) TCGA-G2-A2EL-01 12 57110190 57110190 C G NACA Intron 0.48 TCGA-G2-A2EL-01 12 58009240 58009240 G C ARHGEF25 Intron 0.37 TCGA-G2-A2EL-01 12 62777719 62777719 G C USP15 Missense_Mutation p.L396F 0.37 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EL-01 12 6472772 6472772 G A SCNN1A Missense_Mutation p.S233F 0.50 deleterious(0.04) possibly_damaging(0.6) TCGA-G2-A2EL-01 12 6935995 6935995 G A GPR162 Missense_Mutation p.E465K 0.43 tolerated(0.68) benign(0.005) TCGA-G2-A2EL-01 12 85439894 85439894 A G LRRIQ1 Missense_Mutation p.M145V 0.31 tolerated(1) benign(0.003) TCGA-G2-A2EL-01 12 99129335 99129335 C T ANKS1B 3'UTR 0.67 TCGA-G2-A2EL-01 13 109707814 109707814 C G MYO16 Nonsense_Mutation p.S1047* 0.26 TCGA-G2-A2EL-01 13 49050864 49050864 C T RB1 Nonsense_Mutation p.Q850* 1.00 TCGA-G2-A2EL-01 13 99907920 99907920 C G GPR18 Missense_Mutation p.L69F 0.30 deleterious(0.02) probably_damaging(0.958) TCGA-G2-A2EL-01 14 20344666 20344666 G C OR4K2 Missense_Mutation p.K80N 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EL-01 14 21831283 21831283 C T SUPT16H Missense_Mutation p.R474Q 0.44 deleterious(0) possibly_damaging(0.621) TCGA-G2-A2EL-01 14 39583588 39583588 C T GEMIN2 Missense_Mutation p.R27W 0.59 deleterious(0) possibly_damaging(0.708) TCGA-G2-A2EL-01 14 39721961 39721961 C G MIA2 Missense_Mutation p.S526C 0.49 deleterious(0) probably_damaging(0.927) TCGA-G2-A2EL-01 14 39777766 39777766 C G CTAGE5 Missense_Mutation p.Q395E 0.36 tolerated(0.07) benign(0.32) TCGA-G2-A2EL-01 14 45645029 45645029 C A FANCM Silent p.P1024P 0.49 TCGA-G2-A2EL-01 14 45645527 45645527 C G FANCM Silent p.L1190L 0.41 TCGA-G2-A2EL-01 14 58827650 58827650 G C ARID4A Missense_Mutation p.R657T 0.52 deleterious(0.02) benign(0.048) TCGA-G2-A2EL-01 14 64514862 64514862 G C SYNE2 Missense_Mutation p.E2456Q 0.39 benign(0.167) TCGA-G2-A2EL-01 14 65009011 65009011 G A HSPA2 Missense_Mutation p.D482N 0.57 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-G2-A2EL-01 14 71216771 71216771 C T MAP3K9 Silent p.L343L 0.45 TCGA-G2-A2EL-01 14 73712862 73712862 C A PAPLN Silent p.R105R 0.47 TCGA-G2-A2EL-01 14 74711893 74711893 G C VSX2 Missense_Mutation p.E161Q 0.46 deleterious(0) probably_damaging(0.974) TCGA-G2-A2EL-01 14 75329988 75329988 G A PROX2 Missense_Mutation p.R184C 0.42 deleterious(0.04) possibly_damaging(0.599) TCGA-G2-A2EL-01 14 91779817 91779817 C G CCDC88C Missense_Mutation p.K781N 0.54 deleterious(0) possibly_damaging(0.77) TCGA-G2-A2EL-01 15 28479360 28479360 C T HERC2 Silent p.E1358E 0.61 TCGA-G2-A2EL-01 15 34382588 34382588 G C EMC7 Missense_Mutation p.S142C 0.94 deleterious(0.03) benign(0.119) TCGA-G2-A2EL-01 15 63880588 63880588 C A USP3 Missense_Mutation p.S394Y 0.90 deleterious(0) probably_damaging(1) TCGA-G2-A2EL-01 15 66828290 66828290 C G ZWILCH Nonsense_Mutation p.S454* 0.94 TCGA-G2-A2EL-01 15 69560600 69560600 G C GLCE Missense_Mutation p.D291H 0.96 deleterious(0) probably_damaging(0.968) TCGA-G2-A2EL-01 15 72558267 72558267 C T PARP6 Silent p.E49E 0.78 TCGA-G2-A2EL-01 15 74219679 74219679 C T LOXL1 Silent p.V185V 0.98 TCGA-G2-A2EL-01 15 86311830 86311830 C T KLHL25 Silent p.P404P 0.94 TCGA-G2-A2EL-01 15 91504898 91504898 C T RCCD1 Missense_Mutation p.R344C 0.98 deleterious(0.02) benign(0.002) TCGA-G2-A2EL-01 16 27544611 27544611 C A GTF3C1 Splice_Site p.X283_splice 0.39 TCGA-G2-A2EL-01 16 27561125 27561125 C G GTF3C1 Missense_Mutation p.E29D 0.50 deleterious(0.03) possibly_damaging(0.585) TCGA-G2-A2EL-01 16 29874179 29874179 C T CDIPT 5'UTR 0.39 TCGA-G2-A2EL-01 16 31049910 31049910 G A STX4 Missense_Mutation p.R215H 0.46 tolerated(0.05) probably_damaging(0.991) TCGA-G2-A2EL-01 16 3786706 3786706 C T CREBBP Nonsense_Mutation p.W1502* 0.93 TCGA-G2-A2EL-01 16 56660452 56660452 G A MT1E Intron 0.38 TCGA-G2-A2EL-01 16 58550749 58550749 G C SETD6 Missense_Mutation p.E237Q 0.38 tolerated(0.34) possibly_damaging(0.821) TCGA-G2-A2EL-01 16 58552697 58552697 G A SETD6 Missense_Mutation p.E396K 0.40 deleterious(0.05) benign(0.03) TCGA-G2-A2EL-01 16 58553001 58553001 G - SETD6 3'UTR 0.35 TCGA-G2-A2EL-01 16 68021307 68021307 C T DPEP2 3'UTR 0.50 TCGA-G2-A2EL-01 16 68056722 68056722 A - DDX28 Frame_Shift_Del p.F128Lfs*143 0.21 TCGA-G2-A2EL-01 16 68156357 68156357 G A NFATC3 Missense_Mutation p.D191N 0.48 tolerated(0.08) probably_damaging(0.999) TCGA-G2-A2EL-01 16 68713791 68713791 G C CDH3 Missense_Mutation p.E261Q 0.56 tolerated(0.07) possibly_damaging(0.876) TCGA-G2-A2EL-01 16 68844153 68844153 G A CDH1 Silent p.E247E 0.45 TCGA-G2-A2EL-01 16 77759476 77759476 G C NUDT7 Missense_Mutation p.E62Q 0.42 tolerated(0.31) possibly_damaging(0.58) TCGA-G2-A2EL-01 17 10363353 10363353 G A MYH4 Silent p.T444T 0.94 TCGA-G2-A2EL-01 17 20239313 20239313 G T RN7SL17P 5'Flank 0.51 TCGA-G2-A2EL-01 17 33807041 33807041 G C SLFN12L Nonsense_Mutation p.S63* 0.41 TCGA-G2-A2EL-01 17 37618271 37618271 G C CDK12 5'Flank 0.50 TCGA-G2-A2EL-01 17 41243707 41243707 G A BRCA1 Nonsense_Mutation p.Q1281* 0.45 TCGA-G2-A2EL-01 17 48761319 48761319 G A ABCC3 Missense_Mutation p.V1322M 0.39 deleterious(0) probably_damaging(0.992) TCGA-G2-A2EL-01 17 56598322 56598322 C T SEPT4 Intron 0.47 TCGA-G2-A2EL-01 17 7573010 7573010 T C TP53 Splice_Site p.X367_splice 0.97 TCGA-G2-A2EL-01 17 76562780 76562780 G T DNAH17 Silent p.I495I 0.32 TCGA-G2-A2EL-01 17 79094710 79094710 G C AATK Nonsense_Mutation p.S1009* 0.43 TCGA-G2-A2EL-01 17 79095226 79095226 G A AATK Missense_Mutation p.A837V 0.59 tolerated(0.35) benign(0.003) TCGA-G2-A2EL-01 17 79095898 79095898 G A AATK Missense_Mutation p.S613L 0.50 tolerated(0.21) possibly_damaging(0.856) TCGA-G2-A2EL-01 18 50450225 50450225 C G DCC Silent p.L282L 0.53 TCGA-G2-A2EL-01 18 67872392 67872392 A C RTTN Missense_Mutation p.V64G 0.54 deleterious(0) probably_damaging(0.965) TCGA-G2-A2EL-01 18 77089266 77089266 C T ATP9B Silent p.F633F 0.51 TCGA-G2-A2EL-01 18 77623955 77623955 G A KCNG2 Silent p.P96P 0.79 TCGA-G2-A2EL-01 18 9258475 9258475 G C ANKRD12 Missense_Mutation p.R1737T 0.67 deleterious(0.01) probably_damaging(0.993) TCGA-G2-A2EL-01 19 10104307 10104307 C G COL5A3 Missense_Mutation p.E561D 0.46 unknown(0) TCGA-G2-A2EL-01 19 10224985 10224985 G A PPAN-P2RY11 Silent p.V652V 0.45 TCGA-G2-A2EL-01 19 10572652 10572652 G C PDE4A Missense_Mutation p.D574H 0.40 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EL-01 19 1082962 1082962 G A HMHA1 Missense_Mutation p.E897K 0.71 tolerated(0.18) benign(0.147) TCGA-G2-A2EL-01 19 10916589 10916589 C G DNM2 Intron 0.45 TCGA-G2-A2EL-01 19 11018792 11018792 G A CARM1 Missense_Mutation p.E142K 0.40 deleterious(0) benign(0.059) TCGA-G2-A2EL-01 19 16918490 16918490 G A NWD1 Missense_Mutation p.G1277E 0.55 deleterious(0) probably_damaging(1) TCGA-G2-A2EL-01 19 18260024 18260024 G A MAST3 Missense_Mutation p.A1140T 0.27 tolerated(0.09) benign(0.001) TCGA-G2-A2EL-01 19 18311166 18311166 G A RAB3A Silent p.N106N 0.48 TCGA-G2-A2EL-01 19 19825281 19825281 C T ZNF14 Missense_Mutation p.E7K 0.44 deleterious(0.03) probably_damaging(0.982) TCGA-G2-A2EL-01 19 24010594 24010594 G C RPSAP58 Missense_Mutation p.E211Q 0.48 deleterious(0.01) possibly_damaging(0.887) TCGA-G2-A2EL-01 19 39912864 39912864 C T PLEKHG2 Missense_Mutation p.S538F 0.44 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-G2-A2EL-01 19 41512931 41512931 C G CYP2B6 Missense_Mutation p.F202L 0.37 tolerated(0.81) benign(0.044) TCGA-G2-A2EL-01 19 49851957 49851957 C G TEAD2 Intron 0.36 TCGA-G2-A2EL-01 19 49965915 49965915 G A ALDH16A1 Missense_Mutation p.R334Q 0.52 tolerated(0.18) benign(0.023) TCGA-G2-A2EL-01 19 50097789 50097789 C A PRR12 Nonsense_Mutation p.S93* 0.47 TCGA-G2-A2EL-01 19 51647699 51647699 C A SIGLEC7 Missense_Mutation p.T157N 0.42 deleterious(0) probably_damaging(0.986) TCGA-G2-A2EL-01 19 52498067 52498067 G C ZNF615 Missense_Mutation p.L99V 0.48 tolerated(0.15) probably_damaging(0.994) TCGA-G2-A2EL-01 19 52659499 52659499 G A ZNF836 Silent p.F479F 0.49 TCGA-G2-A2EL-01 19 58511068 58511068 C T ZNF606 Intron 0.30 TCGA-G2-A2EL-01 19 58511212 58511212 C T ZNF606 Silent p.G47G 0.43 TCGA-G2-A2EL-01 19 58846211 58846211 G C ZSCAN22 Missense_Mutation p.E15Q 0.48 tolerated(1) benign(0) TCGA-G2-A2EL-01 19 7591788 7591788 G C MCOLN1 Missense_Mutation p.D183H 0.48 tolerated(0.06) possibly_damaging(0.708) TCGA-G2-A2EL-01 19 852296 852296 G T ELANE 5'UTR 0.68 TCGA-G2-A2EL-01 1 10166258 10166258 C G UBE4B Silent p.L271L 0.64 TCGA-G2-A2EL-01 1 110211575 110211575 G A GSTM2 Silent p.L47L 0.55 TCGA-G2-A2EL-01 1 11159777 11159777 C G EXOSC10 Splice_Site p.X37_splice 0.34 TCGA-G2-A2EL-01 1 1267054 1267054 G C TAS1R3 Missense_Mutation p.M76I 0.20 deleterious(0.02) benign(0.232) TCGA-G2-A2EL-01 1 1267072 1267072 G C TAS1R3 Missense_Mutation p.E82D 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-G2-A2EL-01 1 1267196 1267196 G C TAS1R3 Missense_Mutation p.D124H 0.26 deleterious(0.03) possibly_damaging(0.612) TCGA-G2-A2EL-01 1 1267862 1267862 G C TAS1R3 Missense_Mutation p.Q317H 0.29 deleterious(0.03) benign(0.016) TCGA-G2-A2EL-01 1 1267908 1267908 G C TAS1R3 Missense_Mutation p.E333Q 0.22 tolerated(0.34) benign(0.03) TCGA-G2-A2EL-01 1 1269301 1269301 G A TAS1R3 Silent p.L672L 0.39 TCGA-G2-A2EL-01 1 1269434 1269434 G A TAS1R3 Missense_Mutation p.E717K 0.27 deleterious(0.02) benign(0.269) TCGA-G2-A2EL-01 1 13742872 13742872 G A PRAMEF20 Missense_Mutation p.E21K 0.90 tolerated(0.12) benign(0.006) TCGA-G2-A2EL-01 1 13910364 13910364 G A PDPN Missense_Mutation p.E22K 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.801) TCGA-G2-A2EL-01 1 153941869 153941869 G A CREB3L4 Missense_Mutation p.D161N 0.60 tolerated(0.2) possibly_damaging(0.501) TCGA-G2-A2EL-01 1 155891321 155891321 G A KIAA0907 Nonsense_Mutation p.Q371* 0.49 TCGA-G2-A2EL-01 1 160784451 160784451 C T LY9 Silent p.I324I 0.40 TCGA-G2-A2EL-01 1 175067473 175067473 G C TNN Missense_Mutation p.D621H 0.47 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EL-01 1 175067659 175067659 G T TNN Nonsense_Mutation p.E683* 0.45 TCGA-G2-A2EL-01 1 181021468 181021468 G C MR1 Missense_Mutation p.M234I 0.49 tolerated(1) benign(0.034) TCGA-G2-A2EL-01 1 186344138 186344138 A T TPR Missense_Mutation p.V8D 0.38 possibly_damaging(0.485) TCGA-G2-A2EL-01 1 209936882 209936882 C G TRAF3IP3 Missense_Mutation p.L218V 0.54 deleterious(0) probably_damaging(0.98) TCGA-G2-A2EL-01 1 214170364 214170364 G A PROX1 Silent p.L162L 0.45 TCGA-G2-A2EL-01 1 22181905 22181905 C T HSPG2 Silent p.E1963E 0.33 TCGA-G2-A2EL-01 1 22186152 22186152 G C HSPG2 Missense_Mutation p.P1734A 0.22 benign(0.042) TCGA-G2-A2EL-01 1 227203874 227203874 C A CDC42BPA Missense_Mutation p.M1553I 0.45 tolerated(0.35) benign(0.012) TCGA-G2-A2EL-01 1 233750079 233750079 G C KCNK1 Missense_Mutation p.Q54H 0.35 tolerated(0.07) possibly_damaging(0.707) TCGA-G2-A2EL-01 1 233750080 233750080 G A KCNK1 Missense_Mutation p.E55K 0.35 deleterious(0) benign(0.035) TCGA-G2-A2EL-01 1 233750110 233750110 G A KCNK1 Missense_Mutation p.E65K 0.32 tolerated(0.52) benign(0.013) TCGA-G2-A2EL-01 1 233750167 233750167 G A KCNK1 Missense_Mutation p.E84K 0.33 tolerated(0.3) benign(0.26) TCGA-G2-A2EL-01 1 234452395 234452395 C T SLC35F3 Silent p.Y292Y 0.48 TCGA-G2-A2EL-01 1 24130785 24130785 C G HMGCL Intron 0.37 TCGA-G2-A2EL-01 1 241767757 241767757 C T OPN3 Silent p.L166L 0.49 TCGA-G2-A2EL-01 1 241798632 241798632 G A CHML Missense_Mutation p.S146L 0.42 tolerated(0.38) benign(0) TCGA-G2-A2EL-01 1 246810748 246810748 G C CNST Missense_Mutation p.E415D 0.47 deleterious(0.05) benign(0.009) TCGA-G2-A2EL-01 1 246810871 246810871 G C CNST Missense_Mutation p.Q456H 0.43 tolerated(0.39) benign(0.006) TCGA-G2-A2EL-01 1 27059264 27059264 C G ARID1A Nonsense_Mutation p.S634* 0.97 TCGA-G2-A2EL-01 1 32051391 32051391 G C TINAGL1 Missense_Mutation p.K377N 0.75 deleterious(0.02) benign(0.021) TCGA-G2-A2EL-01 1 33646983 33646983 G C TRIM62 Missense_Mutation p.I17M 0.61 tolerated(0.05) possibly_damaging(0.883) TCGA-G2-A2EL-01 1 42048914 42048914 C G HIVEP3 Missense_Mutation p.E519Q 0.27 possibly_damaging(0.848) TCGA-G2-A2EL-01 1 43212677 43212677 G T LEPRE1 Nonsense_Mutation p.S774* 0.32 TCGA-G2-A2EL-01 1 46744561 46744561 G A LRRC41 Silent p.F805F 0.68 TCGA-G2-A2EL-01 1 51768066 51768066 G C TTC39A Missense_Mutation p.A289G 0.26 deleterious(0.04) possibly_damaging(0.782) TCGA-G2-A2EL-01 1 52811858 52811858 G C ZFYVE9 Missense_Mutation p.E1415Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EL-01 1 55452105 55452105 G C TMEM61 Missense_Mutation p.E117D 0.66 tolerated(0.08) possibly_damaging(0.801) TCGA-G2-A2EL-01 1 62703978 62703978 C T KANK4 Missense_Mutation p.A987T 0.40 tolerated(0.2) benign(0.057) TCGA-G2-A2EL-01 1 6520211 6520211 C T ESPN 3'UTR 0.63 TCGA-G2-A2EL-01 1 70484501 70484501 G A LRRC7 Missense_Mutation p.D436N 0.45 tolerated(0.09) probably_damaging(0.989) TCGA-G2-A2EL-01 1 92193232 92193232 C T TGFBR3 Missense_Mutation p.G290E 0.35 deleterious(0) probably_damaging(0.977) TCGA-G2-A2EL-01 20 10286796 10286796 G C SNAP25 Missense_Mutation p.R191T 0.40 deleterious(0) probably_damaging(0.934) TCGA-G2-A2EL-01 20 1918133 1918133 C G SIRPA Silent p.L478L 0.40 TCGA-G2-A2EL-01 20 25657348 25657348 C G ZNF337 Missense_Mutation p.K192N 0.51 tolerated(0.05) possibly_damaging(0.775) TCGA-G2-A2EL-01 20 33296549 33296549 C T TP53INP2 Silent p.F2F 0.50 TCGA-G2-A2EL-01 20 4163462 4163462 G A SMOX Missense_Mutation p.E446K 0.44 tolerated(0.46) probably_damaging(0.983) TCGA-G2-A2EL-01 20 43052974 43052974 C T HNF4A Intron 0.43 TCGA-G2-A2EL-01 20 44578480 44578480 C G ZNF335 Missense_Mutation p.D1210H 0.44 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EL-01 21 43309389 43309389 G C C2CD2 Silent p.G645G 0.42 TCGA-G2-A2EL-01 22 17589995 17589995 C G IL17RA Missense_Mutation p.S629C 0.30 tolerated(0.07) benign(0.01) TCGA-G2-A2EL-01 22 19709787 19709787 G A SEPT5 Silent p.E326E 0.33 TCGA-G2-A2EL-01 22 21213381 21213381 G C SNAP29 5'UTR 0.41 TCGA-G2-A2EL-01 22 26164375 26164375 A G MYO18B Silent p.S164S 0.10 TCGA-G2-A2EL-01 22 29704254 29704254 G C GAS2L1 Silent p.L53L 0.37 TCGA-G2-A2EL-01 22 29704343 29704343 G A GAS2L1 Missense_Mutation p.R83Q 0.45 tolerated(0.21) possibly_damaging(0.502) TCGA-G2-A2EL-01 22 31536026 31536026 C T PLA2G3 Silent p.Q105Q 0.50 TCGA-G2-A2EL-01 22 39428283 39428283 C T APOBEC3D Nonsense_Mutation p.R375* 0.47 TCGA-G2-A2EL-01 22 41566488 41566488 G C EP300 Missense_Mutation p.Q1455H 0.44 probably_damaging(0.999) TCGA-G2-A2EL-01 22 45241212 45241212 G C ARHGAP8 Silent p.L342L 0.40 TCGA-G2-A2EL-01 22 50279761 50279761 G A ZBED4 Silent p.L817L 0.47 TCGA-G2-A2EL-01 22 50657787 50657787 C G TUBGCP6 Missense_Mutation p.V1472L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EL-01 2 107040707 107040707 T A RGPD3 Missense_Mutation p.N1239I 0.92 deleterious(0.01) benign(0.063) TCGA-G2-A2EL-01 2 128079675 128079675 C T MAP3K2 Missense_Mutation p.S331N 1.00 tolerated(0.13) benign(0.416) TCGA-G2-A2EL-01 2 138414689 138414689 G A THSD7B Missense_Mutation p.R1448Q 0.93 deleterious(0.02) unknown(0) TCGA-G2-A2EL-01 2 149519412 149519412 G C EPC2 Missense_Mutation p.R243T 1.00 deleterious(0) possibly_damaging(0.766) TCGA-G2-A2EL-01 2 15493688 15493688 G A NBAS Silent p.L1360L 0.95 TCGA-G2-A2EL-01 2 162696418 162696418 G A SLC4A10 Missense_Mutation p.E133K 0.80 deleterious(0) benign(0.11) TCGA-G2-A2EL-01 2 163123678 163123678 G A IFIH1 3'UTR 0.96 TCGA-G2-A2EL-01 2 165971968 165971968 C T SCN3A Missense_Mutation p.E1171K 0.97 deleterious(0.02) possibly_damaging(0.81) TCGA-G2-A2EL-01 2 179412227 179412227 A G TTN Missense_Mutation p.Y31376H 1.00 TCGA-G2-A2EL-01 2 204594410 204594410 C T CD28 Missense_Mutation p.S150F 0.96 deleterious(0.01) benign(0.03) TCGA-G2-A2EL-01 2 219610931 219610931 C T TTLL4 Nonsense_Mutation p.R651* 0.90 TCGA-G2-A2EL-01 2 25472585 25472585 C G DNMT3A Intron 0.96 TCGA-G2-A2EL-01 2 72359511 72359511 T C CYP26B1 Missense_Mutation p.S462G 1.00 deleterious(0.02) possibly_damaging(0.542) TCGA-G2-A2EL-01 2 80773162 80773162 C T CTNNA2 Missense_Mutation p.S505L 1.00 deleterious(0) benign(0.349) TCGA-G2-A2EL-01 2 96523140 96523140 C G ANKRD36C Missense_Mutation p.E360Q 0.90 tolerated(0.11) benign(0.094) TCGA-G2-A2EL-01 3 113376298 113376298 G C KIAA2018 Missense_Mutation p.P1411A 0.54 benign(0.006) TCGA-G2-A2EL-01 3 119102036 119102036 C G ARHGAP31 Missense_Mutation p.I215M 0.45 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EL-01 3 121200455 121200455 G C POLQ Missense_Mutation p.Q2059E 0.52 tolerated(0.16) possibly_damaging(0.81) TCGA-G2-A2EL-01 3 122288708 122288708 C T DTX3L Missense_Mutation p.S591L 0.43 tolerated(0.07) benign(0.033) TCGA-G2-A2EL-01 3 147128051 147128051 C A ZIC1 Missense_Mutation p.P51H 0.32 tolerated(0.13) benign(0.003) TCGA-G2-A2EL-01 3 167023707 167023707 G A ZBBX Silent p.I483I 0.31 TCGA-G2-A2EL-01 3 167167184 167167184 G A SERPINI2 Missense_Mutation p.S324F 0.35 deleterious(0.02) probably_damaging(0.933) TCGA-G2-A2EL-01 3 17051901 17051901 A G PLCL2 Missense_Mutation p.K229E 0.51 deleterious(0.02) probably_damaging(0.933) TCGA-G2-A2EL-01 3 179458161 179458161 G A USP13 Splice_Site p.X460_splice 0.39 TCGA-G2-A2EL-01 3 183209739 183209739 G A KLHL6 Silent p.I614I 0.51 TCGA-G2-A2EL-01 3 183643381 183643381 G C ABCC5 Missense_Mutation p.L1392V 0.48 tolerated(0.13) benign(0.443) TCGA-G2-A2EL-01 3 184037480 184037480 G A EIF4G1 Missense_Mutation p.G150D 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-G2-A2EL-01 3 196778533 196778533 C G DLG1 Missense_Mutation p.M863I 0.51 tolerated(0.13) benign(0.02) TCGA-G2-A2EL-01 3 46450001 46450001 G C CCRL2 Missense_Mutation p.R156T 0.94 tolerated(1) benign(0.001) TCGA-G2-A2EL-01 3 47460993 47460993 C T SCAP Missense_Mutation p.E589K 0.92 tolerated(0.12) benign(0.334) TCGA-G2-A2EL-01 3 49695503 49695503 G A BSN Silent p.T2838T 0.92 TCGA-G2-A2EL-01 3 58149077 58149077 C T FLNB Intron 0.34 TCGA-G2-A2EL-01 3 9801412 9801412 C T CAMK1 Silent p.L256L 0.46 TCGA-G2-A2EL-01 3 99513684 99513684 C T COL8A1 Silent p.P313P 0.31 TCGA-G2-A2EL-01 3 99649630 99649630 G C FILIP1L Missense_Mutation p.L79V 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EL-01 4 110756555 110756555 G T RRH Missense_Mutation p.A111S 0.92 deleterious(0.05) benign(0.362) TCGA-G2-A2EL-01 4 119239542 119239542 G A PRSS12 Missense_Mutation p.P381S 0.93 tolerated(0.09) probably_damaging(0.987) TCGA-G2-A2EL-01 4 129778584 129778584 A G JADE1 Missense_Mutation p.N319S 0.94 deleterious(0.01) benign(0.001) TCGA-G2-A2EL-01 4 30732434 30732434 A G PCDH7 Intron 0.51 TCGA-G2-A2EL-01 4 47645189 47645189 G T CORIN Nonsense_Mutation p.S681* 0.39 TCGA-G2-A2EL-01 4 69362629 69362629 G A TMPRSS11E 3'UTR 0.55 TCGA-G2-A2EL-01 4 84376714 84376714 C A HELQ Nonsense_Mutation p.E45* 0.45 TCGA-G2-A2EL-01 4 85672638 85672638 C G WDFY3 Missense_Mutation p.E1991Q 0.48 deleterious(0.02) possibly_damaging(0.688) TCGA-G2-A2EL-01 4 875823 875823 C G GAK Silent p.G511G 0.64 TCGA-G2-A2EL-01 4 87655887 87655887 C T PTPN13 Intron 0.54 TCGA-G2-A2EL-01 4 90170164 90170164 C T GPRIN3 Silent p.G366G 0.36 TCGA-G2-A2EL-01 4 973208 973208 C T SLC26A1 Missense_Mutation p.E221K 0.41 tolerated_low_confidence(0.25) benign(0) TCGA-G2-A2EL-01 5 101795357 101795357 C T SLCO6A1 Intron 0.48 TCGA-G2-A2EL-01 5 118469494 118469494 C T DMXL1 Silent p.L625L 0.41 TCGA-G2-A2EL-01 5 121405766 121405766 G C LOX Nonsense_Mutation p.S410* 0.39 TCGA-G2-A2EL-01 5 132099510 132099510 G A SEPT8 Missense_Mutation p.S141L 0.48 deleterious(0.02) benign(0.311) TCGA-G2-A2EL-01 5 137275811 137275812 - T PKD2L2 Frame_Shift_Ins p.E607* 0.35 TCGA-G2-A2EL-01 5 140214455 140214455 G A PCDHA7 Missense_Mutation p.G163R 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.605) TCGA-G2-A2EL-01 5 140228567 140228567 G A PCDHA9 Missense_Mutation p.G163R 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.864) TCGA-G2-A2EL-01 5 140433468 140433468 C G PCDHB1 Missense_Mutation p.Q805E 0.32 tolerated(1) benign(0.009) TCGA-G2-A2EL-01 5 140711156 140711156 C G PCDHGA1 Nonsense_Mutation p.S302* 0.41 TCGA-G2-A2EL-01 5 161322862 161322862 G C GABRA1 Silent p.V349V 0.52 TCGA-G2-A2EL-01 5 176638788 176638788 G C NSD1 Missense_Mutation p.E1130Q 1.00 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-G2-A2EL-01 5 34850409 34850409 G T TTC23L Silent p.L125L 0.42 TCGA-G2-A2EL-01 5 464428 464428 G A EXOC3 Silent p.T559T 0.46 TCGA-G2-A2EL-01 5 53815453 53815453 G A SNX18 Silent p.L557L 0.43 TCGA-G2-A2EL-01 5 70754468 70754468 C G BDP1 Nonsense_Mutation p.S92* 0.49 TCGA-G2-A2EL-01 5 75914058 75914058 G T F2RL2 Missense_Mutation p.N158K 0.44 deleterious(0.01) probably_damaging(0.932) TCGA-G2-A2EL-01 6 108215079 108215079 G C SEC63 Missense_Mutation p.S488C 0.52 deleterious(0.02) possibly_damaging(0.84) TCGA-G2-A2EL-01 6 119324104 119324104 C G FAM184A Missense_Mutation p.R683T 0.29 deleterious(0) benign(0.306) TCGA-G2-A2EL-01 6 132030013 132030013 C T CTAGE9 Missense_Mutation p.M715I 0.39 tolerated(0.17) benign(0.007) TCGA-G2-A2EL-01 6 144814560 144814560 C T UTRN Silent p.L1521L 0.41 TCGA-G2-A2EL-01 6 26045687 26045687 C G HIST1H3C Missense_Mutation p.P17A 0.47 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-G2-A2EL-01 6 27782430 27782430 C A HIST1H2AJ Missense_Mutation p.R30L 0.50 deleterious_low_confidence(0) benign(0.037) TCGA-G2-A2EL-01 6 27783043 27783043 C T HIST1H2BM Silent p.I74I 0.45 TCGA-G2-A2EL-01 6 28219623 28219623 C T ZKSCAN4 Missense_Mutation p.A46T 0.48 tolerated(0.26) benign(0.011) TCGA-G2-A2EL-01 6 31692755 31692755 C T C6orf25 Silent p.L210L 0.37 TCGA-G2-A2EL-01 6 31737819 31737819 C G VWA7 Missense_Mutation p.G387R 0.44 tolerated(0.05) possibly_damaging(0.895) TCGA-G2-A2EL-01 6 50681607 50681607 G C TFAP2D 5'UTR 0.67 TCGA-G2-A2EL-01 6 70098718 70098718 G C BAI3 Missense_Mutation p.E1502Q 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-G2-A2EL-01 6 71191811 71191811 C T FAM135A Silent p.F259F 0.42 TCGA-G2-A2EL-01 6 7883499 7883499 C T TXNDC5 Missense_Mutation p.V393I 0.45 tolerated(0.1) benign(0.281) TCGA-G2-A2EL-01 7 112724516 112724516 C T GPR85 Nonsense_Mutation p.W87* 0.37 TCGA-G2-A2EL-01 7 120591274 120591274 G A ING3 Missense_Mutation p.D29N 0.54 deleterious(0) probably_damaging(0.992) TCGA-G2-A2EL-01 7 138487791 138487791 G T TMEM213 Nonsense_Mutation p.E101* 0.51 TCGA-G2-A2EL-01 7 140534445 140534445 G A BRAF Silent p.I156I 0.51 TCGA-G2-A2EL-01 7 140534527 140534527 G A BRAF Missense_Mutation p.S129L 0.37 tolerated(0.2) benign(0.003) TCGA-G2-A2EL-01 7 142880769 142880769 C G TAS2R39 Silent p.L86L 0.51 TCGA-G2-A2EL-01 7 143036680 143036680 C G CLCN1 Missense_Mutation p.I516M 0.34 deleterious(0.03) possibly_damaging(0.492) TCGA-G2-A2EL-01 7 21856103 21856103 G A DNAH11 Missense_Mutation p.E3458K 0.58 benign(0.019) TCGA-G2-A2EL-01 7 23509825 23509825 C G IGF2BP3 5'UTR 0.37 TCGA-G2-A2EL-01 7 48312658 48312658 C G ABCA13 Nonsense_Mutation p.S1132* 0.47 TCGA-G2-A2EL-01 7 66264377 66264377 G C KCTD7 Missense_Mutation p.D266H 0.48 tolerated(0.19) benign(0.027) TCGA-G2-A2EL-01 8 105261738 105261738 G T RIMS2 Missense_Mutation p.D1205Y 0.46 tolerated_low_confidence(0.42) probably_damaging(0.973) TCGA-G2-A2EL-01 8 110598367 110598367 G A SYBU Missense_Mutation p.S151L 0.57 deleterious(0) probably_damaging(0.909) TCGA-G2-A2EL-01 8 116617033 116617033 G A TRPS1 Missense_Mutation p.S388L 0.50 tolerated_low_confidence(0.09) benign(0.041) TCGA-G2-A2EL-01 8 142446094 142446094 C G PTP4A3 3'Flank 0.48 TCGA-G2-A2EL-01 8 145135366 145135366 G A EXOSC4 Silent p.E200E 0.48 TCGA-G2-A2EL-01 8 145741145 145741145 C G RECQL4 Intron 0.42 TCGA-G2-A2EL-01 8 19190596 19190596 G C SH2D4A Silent p.L104L 0.35 TCGA-G2-A2EL-01 8 22974541 22974541 T C TNFRSF10C Silent p.V259V 0.43 TCGA-G2-A2EL-01 8 28902932 28902932 C G HMBOX1 Missense_Mutation p.N302K 0.52 deleterious(0.01) possibly_damaging(0.752) TCGA-G2-A2EL-01 8 37693267 37693267 C T GPR124 Missense_Mutation p.P677S 0.28 deleterious(0.01) probably_damaging(1) TCGA-G2-A2EL-01 8 38831863 38831863 C G HTRA4 Silent p.L27L 0.50 TCGA-G2-A2EL-01 8 38831911 38831911 C G HTRA4 Silent p.V43V 0.45 TCGA-G2-A2EL-01 8 43197037 43197037 T C POTEA RNA 0.33 TCGA-G2-A2EL-01 9 100373977 100373977 C T TSTD2 Missense_Mutation p.R203Q 0.98 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EL-01 9 131777141 131777141 C G SH3GLB2 Missense_Mutation p.G126A 0.94 deleterious(0.02) probably_damaging(0.936) TCGA-G2-A2EL-01 9 33294813 33294813 G C NFX1 Missense_Mutation p.E141Q 0.51 tolerated(0.2) possibly_damaging(0.652) TCGA-G2-A2EL-01 9 34088357 34088357 G T DCAF12 Silent p.L451L 0.39 TCGA-G2-A2EL-01 9 35800738 35800738 G C NPR2 Missense_Mutation p.Q417H 0.45 tolerated(0.23) benign(0.008) TCGA-G2-A2EL-01 9 35801716 35801716 G A NPR2 Missense_Mutation p.E505K 0.48 tolerated(0.29) benign(0.062) TCGA-G2-A2EL-01 9 35802245 35802245 G C NPR2 Missense_Mutation p.E559Q 0.42 deleterious(0.01) possibly_damaging(0.692) TCGA-G2-A2EL-01 9 36112348 36112348 G C RECK Missense_Mutation p.Q645H 0.44 tolerated(0.26) benign(0.002) TCGA-G2-A2EL-01 X 12940174 12940174 T C TLR8 Silent p.P1005P 0.04 TCGA-G2-A2EL-01 X 134427717 134427717 A G ZNF75D Missense_Mutation p.V117A 0.04 deleterious(0.03) benign(0.009) TCGA-G2-A2EL-01 X 15588451 15588451 C T ACE2 Silent p.R621R 1.00 TCGA-G2-A2EL-01 X 29973573 29973573 G C IL1RAPL1 Missense_Mutation p.S576T 1.00 tolerated(0.1) probably_damaging(0.952) TCGA-G2-A2EL-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 1.00 TCGA-G2-A2EL-01 X 47308245 47308245 G A ZNF41 Silent p.F308F 0.96 TCGA-G2-A2EL-01 X 50111901 50111901 G C DGKK RNA 0.93 TCGA-G2-A2EL-01 X 77224345 77224345 G A PGAM4 3'UTR 0.96 TCGA-G2-A2EO-01 10 101841262 101841262 C G CPN1 Missense_Mutation p.E41Q 0.37 tolerated(0.95) benign(0.025) TCGA-G2-A2EO-01 10 102089772 102089772 G A PKD2L1 Missense_Mutation p.S30F 0.32 deleterious(0.02) possibly_damaging(0.713) TCGA-G2-A2EO-01 10 104678701 104678701 C G CNNM2 Nonsense_Mutation p.S155* 0.12 TCGA-G2-A2EO-01 10 104816644 104816644 G A CNNM2 Missense_Mutation p.E666K 0.27 deleterious(0.04) benign(0.172) TCGA-G2-A2EO-01 10 116307536 116307536 C G ABLIM1 Splice_Site p.X225_splice 0.18 TCGA-G2-A2EO-01 10 121586615 121586615 C G INPP5F Missense_Mutation p.L908V 0.16 tolerated_low_confidence(0.51) benign(0.001) TCGA-G2-A2EO-01 10 123844900 123844900 C G TACC2 Missense_Mutation p.S962W 0.30 probably_damaging(0.922) TCGA-G2-A2EO-01 10 124380654 124380654 C T DMBT1 Missense_Mutation p.S1660F 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A2EO-01 10 124390773 124390773 G A DMBT1 Missense_Mutation p.E1979K 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-G2-A2EO-01 10 127542652 127542652 C T DHX32 Missense_Mutation p.E324K 0.10 tolerated(0.63) benign(0.046) TCGA-G2-A2EO-01 10 129903899 129903899 C G MKI67 Missense_Mutation p.E2069Q 0.16 deleterious(0.04) benign(0.212) TCGA-G2-A2EO-01 10 129904445 129904445 C G MKI67 Missense_Mutation p.E1887Q 0.10 tolerated(0.14) possibly_damaging(0.88) TCGA-G2-A2EO-01 10 13154581 13154581 C G OPTN Silent p.L166L 0.24 TCGA-G2-A2EO-01 10 15121001 15121001 C T ACBD7 Silent p.L17L 0.26 TCGA-G2-A2EO-01 10 22002839 22002839 C T MLLT10 Missense_Mutation p.S613L 0.21 tolerated(0.06) benign(0.001) TCGA-G2-A2EO-01 10 23611391 23611391 C G C10orf67 Missense_Mutation p.E136Q 0.14 tolerated(0.14) possibly_damaging(0.693) TCGA-G2-A2EO-01 10 27400798 27400798 C T YME1L1 3'UTR 0.28 TCGA-G2-A2EO-01 10 29820964 29820964 G T SVIL Missense_Mutation p.P659H 0.11 deleterious(0) probably_damaging(0.995) TCGA-G2-A2EO-01 10 30987354 30987354 C T SVILP1 RNA 0.25 TCGA-G2-A2EO-01 10 38306269 38306269 G A ZNF33A Missense_Mutation p.E69K 0.27 deleterious(0.01) possibly_damaging(0.879) TCGA-G2-A2EO-01 10 43089326 43089326 G A ZNF33B Nonsense_Mutation p.Q358* 0.28 TCGA-G2-A2EO-01 10 43601965 43601965 G A RET Missense_Mutation p.E337K 0.35 deleterious(0.05) benign(0.284) TCGA-G2-A2EO-01 10 45877975 45877975 C T ALOX5 Silent p.I65I 0.23 TCGA-G2-A2EO-01 10 50118228 50118228 C T LRRC18 3'UTR 0.20 TCGA-G2-A2EO-01 10 50690842 50690842 G C ERCC6 Missense_Mutation p.S687W 0.35 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 10 5855304 5855304 C G GDI2 5'UTR 0.36 TCGA-G2-A2EO-01 10 60145995 60145995 G A TFAM Silent p.P39P 0.28 TCGA-G2-A2EO-01 10 69926110 69926110 G A MYPN Missense_Mutation p.A554T 0.16 tolerated(0.61) benign(0.002) TCGA-G2-A2EO-01 10 70412289 70412289 G A TET1 Missense_Mutation p.E1467K 0.30 deleterious(0) probably_damaging(0.958) TCGA-G2-A2EO-01 10 70412337 70412337 C G TET1 Missense_Mutation p.P1483A 0.19 deleterious(0.01) possibly_damaging(0.754) TCGA-G2-A2EO-01 10 70719870 70719870 G A DDX21 Silent p.K132K 0.21 TCGA-G2-A2EO-01 10 75532615 75532615 C G FUT11 Missense_Mutation p.S175W 0.31 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 10 76803619 76803619 G C DUPD1 Missense_Mutation p.F119L 0.19 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 10 89501082 89501082 C T PAPSS2 Silent p.L393L 0.10 TCGA-G2-A2EO-01 10 91099478 91099478 G A IFIT3 Missense_Mutation p.E356K 0.40 tolerated(0.53) benign(0.027) TCGA-G2-A2EO-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.38 TCGA-G2-A2EO-01 11 10014566 10014566 G A SBF2 Missense_Mutation p.H380Y 0.27 deleterious(0.01) possibly_damaging(0.838) TCGA-G2-A2EO-01 11 1011245 1011245 C G AP2A2 3'UTR 0.11 TCGA-G2-A2EO-01 11 104903799 104903799 G A CASP1 Missense_Mutation p.S110F 0.28 tolerated(0.05) benign(0.122) TCGA-G2-A2EO-01 11 105923824 105923824 C G KBTBD3 Missense_Mutation p.W531S 0.10 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 11 10823639 10823640 TG - EIF4G2 Frame_Shift_Del p.Q419Ifs*22 0.14 TCGA-G2-A2EO-01 11 108577549 108577549 C T DDX10 Missense_Mutation p.P436L 0.15 deleterious(0.01) possibly_damaging(0.887) TCGA-G2-A2EO-01 11 113934854 113934854 G C ZBTB16 Missense_Mutation p.E278Q 0.15 tolerated(0.08) benign(0.014) TCGA-G2-A2EO-01 11 1157932 1157932 C G MUC5AC Missense_Mutation p.F333L 0.16 tolerated(1) benign(0.002) TCGA-G2-A2EO-01 11 119027643 119027643 G C ABCG4 Missense_Mutation p.Q329H 0.19 tolerated(0.11) benign(0.009) TCGA-G2-A2EO-01 11 120169015 120169015 C T POU2F3 Silent p.L60L 0.16 TCGA-G2-A2EO-01 11 122805334 122805334 C T C11orf63 Silent p.P395P 0.20 TCGA-G2-A2EO-01 11 12341262 12341262 C T MICALCL Silent p.L482L 0.22 TCGA-G2-A2EO-01 11 130059777 130059777 C T ST14 Missense_Mutation p.S195L 0.18 deleterious(0.01) possibly_damaging(0.835) TCGA-G2-A2EO-01 11 130748262 130748262 C T SNX19 3'UTR 0.12 TCGA-G2-A2EO-01 11 13435141 13435141 C T BTBD10 Silent p.L248L 0.10 TCGA-G2-A2EO-01 11 18309162 18309162 G A HPS5 Silent p.I879I 0.28 TCGA-G2-A2EO-01 11 26584757 26584757 G C MUC15 Silent p.V277V 0.29 TCGA-G2-A2EO-01 11 31284580 31284580 C G DCDC1 3'UTR 0.07 TCGA-G2-A2EO-01 11 32636042 32636042 G T CCDC73 Missense_Mutation p.P608T 0.15 tolerated(0.32) benign(0.094) TCGA-G2-A2EO-01 11 32955538 32955538 C T QSER1 Nonsense_Mutation p.Q783* 0.13 TCGA-G2-A2EO-01 11 45891150 45891150 G C CRY2 Missense_Mutation p.D347H 0.29 deleterious(0.04) possibly_damaging(0.86) TCGA-G2-A2EO-01 11 46387826 46387826 G A DGKZ Missense_Mutation p.R7K 0.21 tolerated_low_confidence(0.09) benign(0.001) TCGA-G2-A2EO-01 11 46397143 46397143 G A DGKZ Silent p.Q812Q 0.37 TCGA-G2-A2EO-01 11 47198344 47198344 G C ARFGAP2 Missense_Mutation p.P21A 0.15 tolerated(0.16) benign(0.051) TCGA-G2-A2EO-01 11 47254407 47254407 C T DDB2 Missense_Mutation p.L167F 0.09 tolerated(0.8) possibly_damaging(0.804) TCGA-G2-A2EO-01 11 47254409 47254409 C T DDB2 Silent p.L167L 0.09 TCGA-G2-A2EO-01 11 47254435 47254435 C T DDB2 Missense_Mutation p.S176L 0.11 deleterious(0) probably_damaging(0.931) TCGA-G2-A2EO-01 11 47744605 47744605 G C FNBP4 Missense_Mutation p.P910A 0.50 tolerated(0.07) possibly_damaging(0.772) TCGA-G2-A2EO-01 11 48152048 48152048 C T PTPRJ Silent p.V465V 0.25 TCGA-G2-A2EO-01 11 4936063 4936063 G T OR51G2 Silent p.V277V 0.18 TCGA-G2-A2EO-01 11 55432625 55432625 C G OR4C6 5'UTR 0.30 TCGA-G2-A2EO-01 11 55595152 55595152 C T OR5L2 Missense_Mutation p.T153M 0.21 tolerated(0.39) benign(0.051) TCGA-G2-A2EO-01 11 56020545 56020545 G A OR5T3 Missense_Mutation p.M290I 0.10 tolerated(0.21) benign(0.038) TCGA-G2-A2EO-01 11 56043552 56043552 G A OR5T1 Silent p.V146V 0.23 TCGA-G2-A2EO-01 11 56114212 56114212 G C OR8K1 Missense_Mutation p.R233T 0.18 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-G2-A2EO-01 11 59190117 59190117 C A OR5A2 Missense_Mutation p.V104F 0.27 tolerated(1) benign(0.004) TCGA-G2-A2EO-01 11 59271544 59271544 C T OR4D11 Missense_Mutation p.L166F 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-G2-A2EO-01 11 59271963 59271963 C T OR4D11 Silent p.L305L 0.17 TCGA-G2-A2EO-01 11 61732243 61732243 G C FTH1 Missense_Mutation p.L170V 0.26 tolerated(0.07) benign(0.025) TCGA-G2-A2EO-01 11 61732561 61732561 C G FTH1 Missense_Mutation p.E95D 0.13 tolerated(0.18) benign(0.003) TCGA-G2-A2EO-01 11 61732918 61732918 C G FTH1 Missense_Mutation p.E62Q 0.12 deleterious(0.02) benign(0.368) TCGA-G2-A2EO-01 11 618014 618014 G A CDHR5 Silent p.L686L 0.20 TCGA-G2-A2EO-01 11 62289440 62289440 G A AHNAK Missense_Mutation p.S4150F 0.25 probably_damaging(0.968) TCGA-G2-A2EO-01 11 62414702 62414702 G C INTS5 Silent p.L950L 0.20 TCGA-G2-A2EO-01 11 62415293 62415293 G A INTS5 Silent p.V753V 0.21 TCGA-G2-A2EO-01 11 62494157 62494157 C G HNRNPUL2 Missense_Mutation p.E158Q 0.29 tolerated(0.32) possibly_damaging(0.557) TCGA-G2-A2EO-01 11 62557518 62557518 G A TMEM179B Silent p.%3D 0.31 TCGA-G2-A2EO-01 11 64410027 64410027 G A NRXN2 Intron 0.26 TCGA-G2-A2EO-01 11 64520647 64520647 G C PYGM Missense_Mutation p.F472L 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-G2-A2EO-01 11 64665196 64665196 C T ATG2A Missense_Mutation p.E1672K 0.18 deleterious(0) probably_damaging(0.978) TCGA-G2-A2EO-01 11 6470362 6470362 C T TRIM3 Missense_Mutation p.E711K 0.31 deleterious(0) benign(0.11) TCGA-G2-A2EO-01 11 64884581 64884581 C T ZNHIT2 Missense_Mutation p.G182E 0.26 tolerated(0.29) benign(0.013) TCGA-G2-A2EO-01 11 65268341 65268341 G C MALAT1 RNA 0.29 TCGA-G2-A2EO-01 11 65268496 65268496 G A MALAT1 RNA 0.21 TCGA-G2-A2EO-01 11 65268884 65268884 G A MALAT1 RNA 0.14 TCGA-G2-A2EO-01 11 65269315 65269315 G C MALAT1 RNA 0.14 TCGA-G2-A2EO-01 11 65272099 65272099 G C MALAT1 RNA 0.22 TCGA-G2-A2EO-01 11 65427190 65427190 G C RELA Nonsense_Mutation p.S169* 0.27 TCGA-G2-A2EO-01 11 6592126 6592126 C T DNHD1 Missense_Mutation p.R4462C 0.27 benign(0.016) TCGA-G2-A2EO-01 11 66278173 66278173 G A BBS1 Missense_Mutation p.E15K 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-G2-A2EO-01 11 67022406 67022406 G A KDM2A Silent p.L1123L 0.23 TCGA-G2-A2EO-01 11 67888317 67888317 C T CHKA Missense_Mutation p.E110K 0.21 tolerated(0.06) benign(0.005) TCGA-G2-A2EO-01 11 69482660 69482660 C T ORAOV1 Intron 0.11 TCGA-G2-A2EO-01 11 70189871 70189871 G C PPFIA1 Missense_Mutation p.D602H 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-G2-A2EO-01 11 72296412 72296412 C G PDE2A Intron 0.26 TCGA-G2-A2EO-01 11 73078785 73078785 G A ARHGEF17 Missense_Mutation p.R2051Q 0.13 deleterious(0.01) possibly_damaging(0.538) TCGA-G2-A2EO-01 11 73372721 73372721 C A PLEKHB1 3'UTR 0.26 TCGA-G2-A2EO-01 11 73718076 73718076 C T UCP3 Silent p.L4L 0.23 TCGA-G2-A2EO-01 11 73820130 73820130 C A C2CD3 Missense_Mutation p.W637C 0.27 tolerated(0.05) probably_damaging(1) TCGA-G2-A2EO-01 11 73844510 73844510 G A C2CD3 Missense_Mutation p.H350Y 0.37 tolerated(1) possibly_damaging(0.713) TCGA-G2-A2EO-01 11 75298605 75298605 C T MAP6 Silent p.P647P 0.30 TCGA-G2-A2EO-01 11 76257029 76257029 G C C11orf30 Missense_Mutation p.L1154F 0.30 deleterious_low_confidence(0) benign(0.163) TCGA-G2-A2EO-01 11 78369325 78369325 C G TENM4 Missense_Mutation p.Q2696H 0.31 deleterious(0) probably_damaging(0.98) TCGA-G2-A2EO-01 11 86119250 86119250 G A CCDC81 Missense_Mutation p.D351N 0.22 tolerated(0.07) benign(0.132) TCGA-G2-A2EO-01 11 9042589 9042589 G A SCUBE2 3'UTR 0.35 TCGA-G2-A2EO-01 11 9435956 9435956 C T IPO7 Nonsense_Mutation p.Q212* 0.10 TCGA-G2-A2EO-01 11 9838482 9838482 G A SBF2 Missense_Mutation p.H1295Y 0.18 deleterious(0.05) benign(0.012) TCGA-G2-A2EO-01 12 100657378 100657378 C G DEPDC4 Missense_Mutation p.E151Q 0.32 deleterious(0) probably_damaging(0.987) TCGA-G2-A2EO-01 12 100797851 100797851 G A SLC17A8 Missense_Mutation p.M363I 0.24 deleterious(0) probably_damaging(0.992) TCGA-G2-A2EO-01 12 10124258 10124258 C T CLEC12A Silent p.I31I 0.18 TCGA-G2-A2EO-01 12 105456731 105456731 C G ALDH1L2 Missense_Mutation p.G286R 0.27 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-G2-A2EO-01 12 109306319 109306319 G C SVOP Missense_Mutation p.Q482E 0.26 deleterious_low_confidence(0.02) benign(0.163) TCGA-G2-A2EO-01 12 109309593 109309593 C G SVOP Missense_Mutation p.R404T 0.29 deleterious(0) possibly_damaging(0.866) TCGA-G2-A2EO-01 12 112460294 112460294 G C ERP29 Missense_Mutation p.K208N 0.25 deleterious(0) probably_damaging(0.977) TCGA-G2-A2EO-01 12 112585913 112585913 C T TRAFD1 Silent p.L321L 0.23 TCGA-G2-A2EO-01 12 113376424 113376424 G A OAS3 Missense_Mutation p.R30Q 0.15 deleterious(0.02) benign(0.034) TCGA-G2-A2EO-01 12 117402587 117402587 G A FBXW8 Missense_Mutation p.E255K 0.10 tolerated(0.08) possibly_damaging(0.548) TCGA-G2-A2EO-01 12 120288075 120288075 G A CIT Missense_Mutation p.S140L 0.26 tolerated(0.2) benign(0.003) TCGA-G2-A2EO-01 12 12247765 12247765 C G BCL2L14 Silent p.L282L 0.25 TCGA-G2-A2EO-01 12 124104529 124104529 G C DDX55 Missense_Mutation p.E549Q 0.20 tolerated(0.06) benign(0.06) TCGA-G2-A2EO-01 12 124212437 124212437 C T ATP6V0A2 Missense_Mutation p.S210F 0.08 deleterious(0.03) benign(0.073) TCGA-G2-A2EO-01 12 124398924 124398924 G A DNAH10 Silent p.L3349L 0.23 TCGA-G2-A2EO-01 12 132198734 132198734 G C SFSWAP Missense_Mutation p.E113Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EO-01 12 133381374 133381374 C T GOLGA3 Missense_Mutation p.E509K 0.28 deleterious(0) possibly_damaging(0.862) TCGA-G2-A2EO-01 12 18876389 18876389 C T PLCZ1 Missense_Mutation p.E75K 0.19 tolerated(0.21) probably_damaging(0.989) TCGA-G2-A2EO-01 12 20801786 20801786 G A PDE3A Silent p.L910L 0.32 TCGA-G2-A2EO-01 12 2690861 2690861 C A CACNA1C Silent p.L667L 0.12 TCGA-G2-A2EO-01 12 27235150 27235150 G T C12orf71 Missense_Mutation p.F89L 0.11 tolerated(0.05) benign(0.001) TCGA-G2-A2EO-01 12 2933049 2933049 C T ITFG2 Silent p.L394L 0.32 TCGA-G2-A2EO-01 12 2997219 2997219 C T RHNO1 Missense_Mutation p.S104L 0.13 tolerated(0.18) benign(0.066) TCGA-G2-A2EO-01 12 30833556 30833556 C T IPO8 Missense_Mutation p.E167K 0.11 deleterious(0) possibly_damaging(0.566) TCGA-G2-A2EO-01 12 34175454 34175454 C G ALG10 5'UTR 0.11 TCGA-G2-A2EO-01 12 39703448 39703448 G C KIF21A Nonsense_Mutation p.S1406* 0.21 TCGA-G2-A2EO-01 12 40629491 40629491 G A LRRK2 Silent p.K137K 0.18 TCGA-G2-A2EO-01 12 46240637 46240638 - GCTT ARID2 Splice_Site p.X500_splice 0.14 TCGA-G2-A2EO-01 12 50355833 50355833 C T AQP5 Silent p.L11L 0.25 TCGA-G2-A2EO-01 12 50536906 50536906 G A CERS5 Missense_Mutation p.R129W 0.28 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 12 51323733 51323733 G C METTL7A Missense_Mutation p.E179Q 0.23 deleterious(0.01) benign(0.028) TCGA-G2-A2EO-01 12 51323817 51323817 G T METTL7A Nonsense_Mutation p.E207* 0.22 TCGA-G2-A2EO-01 12 51467852 51467852 C T CSRNP2 Silent p.L55L 0.23 TCGA-G2-A2EO-01 12 51686023 51686023 C G BIN2 Missense_Mutation p.E289D 0.29 tolerated(0.1) benign(0.015) TCGA-G2-A2EO-01 12 52627047 52627047 C G KRT7 5'UTR 0.30 TCGA-G2-A2EO-01 12 52647549 52647549 C G KRT7 3'Flank 0.36 TCGA-G2-A2EO-01 12 52843380 52843380 G T KRT6B Missense_Mutation p.S317Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EO-01 12 53232814 53232814 C T KRT78 3'UTR 0.35 TCGA-G2-A2EO-01 12 54367563 54367563 G T HOXC11 Nonsense_Mutation p.E180* 0.20 TCGA-G2-A2EO-01 12 54367605 54367605 G A HOXC11 Missense_Mutation p.E194K 0.35 tolerated(0.51) benign(0.084) TCGA-G2-A2EO-01 12 54675946 54675946 G C HNRNPA1 Missense_Mutation p.E118Q 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-G2-A2EO-01 12 54686808 54686808 G A NFE2 Missense_Mutation p.L158F 0.26 tolerated(0.11) probably_damaging(0.961) TCGA-G2-A2EO-01 12 54686810 54686810 G A NFE2 Missense_Mutation p.S157F 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-G2-A2EO-01 12 54756605 54756605 C G GPR84 Missense_Mutation p.R344T 0.30 tolerated(0.16) benign(0.027) TCGA-G2-A2EO-01 12 56113319 56113319 G A BLOC1S1 Missense_Mutation p.E130K 0.20 deleterious(0.02) possibly_damaging(0.723) TCGA-G2-A2EO-01 12 56481671 56481671 T C ERBB3 Missense_Mutation p.S236P 0.25 deleterious(0.03) possibly_damaging(0.468) TCGA-G2-A2EO-01 12 56553863 56553863 C T MYL6 Missense_Mutation p.R94W 0.29 deleterious(0.03) benign(0.006) TCGA-G2-A2EO-01 12 56822358 56822358 C A TIMELESS Silent p.V461V 0.22 TCGA-G2-A2EO-01 12 65639552 65639552 G A LEMD3 Missense_Mutation p.E831K 0.35 deleterious(0.03) probably_damaging(0.975) TCGA-G2-A2EO-01 12 68707440 68707440 G C MDM1 Silent p.L531L 0.13 TCGA-G2-A2EO-01 12 6924060 6924060 C T CD4 Missense_Mutation p.S170F 0.30 tolerated(0.1) benign(0.19) TCGA-G2-A2EO-01 12 72316827 72316827 C T TBC1D15 Missense_Mutation p.S640L 0.12 tolerated(0.05) benign(0.008) TCGA-G2-A2EO-01 12 72666690 72666690 C T TRHDE Silent p.F44F 0.47 TCGA-G2-A2EO-01 12 85466779 85466779 C T LRRIQ1 Silent p.V930V 0.18 TCGA-G2-A2EO-01 12 8618181 8618181 G A CLEC6A Missense_Mutation p.E109K 0.29 tolerated(0.88) benign(0.017) TCGA-G2-A2EO-01 12 93172980 93172980 C G EEA1 Missense_Mutation p.E1189Q 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-G2-A2EO-01 12 94243743 94243743 C T CRADD Intron 0.21 TCGA-G2-A2EO-01 12 98849026 98849026 G A SLC9A7P1 RNA 0.20 TCGA-G2-A2EO-01 13 102235651 102235651 T A ITGBL1 Nonsense_Mutation p.C271* 0.18 TCGA-G2-A2EO-01 13 107187316 107187316 G A EFNB2 5'UTR 0.36 TCGA-G2-A2EO-01 13 109613989 109613989 C T MYO16 Nonsense_Mutation p.Q692* 0.38 TCGA-G2-A2EO-01 13 111806184 111806184 C A ARHGEF7 Intron 0.44 TCGA-G2-A2EO-01 13 113720402 113720402 G C MCF2L Missense_Mutation p.E267Q 0.32 tolerated(0.37) benign(0.008) TCGA-G2-A2EO-01 13 25008601 25008601 C T PARP4 Missense_Mutation p.E1560K 0.13 tolerated(0.84) benign(0) TCGA-G2-A2EO-01 13 25826037 25826037 G A MTMR6 Missense_Mutation p.H478Y 0.12 tolerated(0.21) benign(0.027) TCGA-G2-A2EO-01 13 26928010 26928010 G C CDK8 Missense_Mutation p.R150T 0.13 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 13 31232711 31232711 C T USPL1 Missense_Mutation p.P833S 0.12 tolerated(0.27) benign(0.307) TCGA-G2-A2EO-01 13 32811517 32811517 T G FRY Missense_Mutation p.S1938A 0.18 tolerated(0.68) benign(0.002) TCGA-G2-A2EO-01 13 42874796 42874796 A G AKAP11 Missense_Mutation p.I638M 0.10 tolerated(0.17) possibly_damaging(0.474) TCGA-G2-A2EO-01 13 53421533 53421533 C T PCDH8 Missense_Mutation p.V347I 0.23 tolerated(0.08) benign(0.02) TCGA-G2-A2EO-01 14 102493971 102493971 G C DYNC1H1 Missense_Mutation p.E3022Q 0.26 probably_damaging(0.994) TCGA-G2-A2EO-01 14 102502930 102502930 G A DYNC1H1 Missense_Mutation p.R3620K 0.25 benign(0.3) TCGA-G2-A2EO-01 14 106552446 106552446 C G IGHV3-9 Missense_Mutation p.E65Q 0.22 tolerated_low_confidence(0.12) benign(0.446) TCGA-G2-A2EO-01 14 20779647 20779647 G A CCNB1IP1 3'UTR 0.22 TCGA-G2-A2EO-01 14 21899134 21899134 C T CHD8 Silent p.V223V 0.26 TCGA-G2-A2EO-01 14 23792231 23792231 G A PABPN1 Missense_Mutation p.E164K 0.30 tolerated(0.13) benign(0.325) TCGA-G2-A2EO-01 14 23845102 23845102 G C IL25 3'UTR 0.14 TCGA-G2-A2EO-01 14 24036583 24036583 C T AP1G2 5'UTR 0.23 TCGA-G2-A2EO-01 14 24648862 24648862 G C REC8 Missense_Mutation p.E460Q 0.27 deleterious(0) probably_damaging(0.969) TCGA-G2-A2EO-01 14 24901328 24901328 C G KHNYN Silent p.L287L 0.14 TCGA-G2-A2EO-01 14 36096603 36096603 C G RALGAPA1 Missense_Mutation p.E1678Q 0.08 tolerated(0.24) benign(0.034) TCGA-G2-A2EO-01 14 50088560 50088560 G A MGAT2 Missense_Mutation p.D192N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EO-01 14 50175883 50175883 G T KLHDC1 Nonsense_Mutation p.E35* 0.14 TCGA-G2-A2EO-01 14 53248520 53248520 G A GNPNAT1 Silent p.F109F 0.20 TCGA-G2-A2EO-01 14 55817300 55817300 C G FBXO34 Missense_Mutation p.I64M 0.32 deleterious(0.01) possibly_damaging(0.736) TCGA-G2-A2EO-01 14 55817474 55817474 C G FBXO34 Missense_Mutation p.F122L 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-G2-A2EO-01 14 59834201 59834201 G C DAAM1 Missense_Mutation p.E971Q 0.18 tolerated(0.05) probably_damaging(0.913) TCGA-G2-A2EO-01 14 61115580 61115580 G A SIX1 Missense_Mutation p.R110W 0.35 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 14 67291216 67291216 G A GPHN Missense_Mutation p.E76K 0.24 tolerated(0.31) benign(0.057) TCGA-G2-A2EO-01 14 71479708 71479708 C G PCNX Missense_Mutation p.L929V 0.12 tolerated(0.32) benign(0.07) TCGA-G2-A2EO-01 14 73404761 73404761 C G DCAF4 Silent p.L25L 0.23 TCGA-G2-A2EO-01 14 73576063 73576063 C T RBM25 Nonsense_Mutation p.Q519* 0.24 TCGA-G2-A2EO-01 14 74411204 74411204 G C FAM161B Silent p.L316L 0.25 TCGA-G2-A2EO-01 14 77808143 77808143 G C TMED8 Missense_Mutation p.L317V 0.31 tolerated(0.17) probably_damaging(0.999) TCGA-G2-A2EO-01 14 77934848 77934848 G A AHSA1 Missense_Mutation p.E281K 0.22 tolerated(0.17) benign(0.219) TCGA-G2-A2EO-01 14 89124543 89124543 C T EML5 Missense_Mutation p.E1289K 0.26 deleterious(0.01) possibly_damaging(0.823) TCGA-G2-A2EO-01 14 91744440 91744440 G A CCDC88C Silent p.L1628L 0.31 TCGA-G2-A2EO-01 14 93814553 93814553 G C COX8C 3'UTR 0.23 TCGA-G2-A2EO-01 14 94528596 94528596 C G DDX24 Missense_Mutation p.E364Q 0.27 tolerated(0.13) possibly_damaging(0.815) TCGA-G2-A2EO-01 15 101588736 101588736 G A LRRK1 Missense_Mutation p.R1058K 0.20 tolerated(0.31) benign(0.016) TCGA-G2-A2EO-01 15 101601442 101601442 G A LRRK1 Missense_Mutation p.M1582I 0.24 tolerated(0.17) benign(0.004) TCGA-G2-A2EO-01 15 101718818 101718818 C T CHSY1 Missense_Mutation p.R395K 0.32 tolerated(0.1) benign(0.088) TCGA-G2-A2EO-01 15 102255153 102255153 C G TARSL2 Missense_Mutation p.E194Q 0.14 tolerated(0.09) benign(0.139) TCGA-G2-A2EO-01 15 20651261 20651261 A G HERC2P3 RNA 0.16 TCGA-G2-A2EO-01 15 22369079 22369079 C T OR4M2 Silent p.F168F 0.14 TCGA-G2-A2EO-01 15 22848823 22848823 G A TUBGCP5 Intron 0.30 TCGA-G2-A2EO-01 15 23811021 23811021 A G MKRN3 Missense_Mutation p.D31G 0.07 tolerated(0.83) benign(0) TCGA-G2-A2EO-01 15 25432710 25432710 C T SNORD115-10 RNA 0.25 TCGA-G2-A2EO-01 15 28277301 28277301 G T OCA2 Missense_Mutation p.S79Y 0.26 tolerated_low_confidence(1) benign(0.11) TCGA-G2-A2EO-01 15 28437183 28437183 G A HERC2 Missense_Mutation p.S2792L 0.24 possibly_damaging(0.641) TCGA-G2-A2EO-01 15 32929006 32929006 C T ARHGAP11A Nonsense_Mutation p.Q678* 0.19 TCGA-G2-A2EO-01 15 32988730 32988730 C G SCG5 Missense_Mutation p.L187V 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EO-01 15 38766480 38766480 G C FAM98B Missense_Mutation p.G237A 0.08 tolerated(0.06) possibly_damaging(0.721) TCGA-G2-A2EO-01 15 38990393 38990393 G A C15orf53 Missense_Mutation p.E63K 0.30 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-G2-A2EO-01 15 40675092 40675092 C T KNSTRN Missense_Mutation p.S19F 0.12 deleterious_low_confidence(0) benign(0.178) TCGA-G2-A2EO-01 15 41648287 41648287 G T NUSAP1 Missense_Mutation p.D167Y 0.21 deleterious(0.02) probably_damaging(0.917) TCGA-G2-A2EO-01 15 42021428 42021428 C T MGA Nonsense_Mutation p.R1242* 0.21 TCGA-G2-A2EO-01 15 42028655 42028655 C G MGA Missense_Mutation p.S1398C 0.23 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 15 42028795 42028795 C T MGA Missense_Mutation p.H1445Y 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-G2-A2EO-01 15 42042799 42042799 G C MGA Missense_Mutation p.D2332H 0.20 tolerated(0.11) possibly_damaging(0.681) TCGA-G2-A2EO-01 15 42092064 42092064 G T MAPKBP1 Missense_Mutation p.R53I 0.26 deleterious(0.01) benign(0.09) TCGA-G2-A2EO-01 15 42092078 42092078 G A MAPKBP1 Missense_Mutation p.D58N 0.27 deleterious(0) benign(0.102) TCGA-G2-A2EO-01 15 42164497 42164497 C T SPTBN5 Intron 0.23 TCGA-G2-A2EO-01 15 42584941 42584941 C T GANC Missense_Mutation p.S113L 0.27 benign(0.002) TCGA-G2-A2EO-01 15 43281096 43281096 C G UBR1 Missense_Mutation p.L1306F 0.25 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 15 44109443 44109443 C T MFAP1 Missense_Mutation p.E95K 0.16 tolerated(0.16) benign(0.292) TCGA-G2-A2EO-01 15 45965961 45965961 C T SQRDL Nonsense_Mutation p.Q206* 0.19 TCGA-G2-A2EO-01 15 51772908 51772908 C G DMXL2 Missense_Mutation p.R2132T 0.19 tolerated(0.44) probably_damaging(0.999) TCGA-G2-A2EO-01 15 51772963 51772963 C T DMXL2 Missense_Mutation p.E2114K 0.15 tolerated(0.21) benign(0.127) TCGA-G2-A2EO-01 15 51772972 51772972 C G DMXL2 Missense_Mutation p.D2111H 0.15 tolerated(0.24) benign(0.007) TCGA-G2-A2EO-01 15 51773374 51773374 C G DMXL2 Missense_Mutation p.D1977H 0.27 deleterious(0.03) probably_damaging(1) TCGA-G2-A2EO-01 15 53081206 53081206 G C ONECUT1 Missense_Mutation p.I292M 0.25 deleterious(0.01) possibly_damaging(0.495) TCGA-G2-A2EO-01 15 58285149 58285149 G A ALDH1A2 Silent p.I226I 0.28 TCGA-G2-A2EO-01 15 62283250 62283250 G T VPS13C Missense_Mutation p.F509L 0.17 deleterious(0) possibly_damaging(0.507) TCGA-G2-A2EO-01 15 64983649 64983649 G C OAZ2 Nonsense_Mutation p.S54* 0.30 TCGA-G2-A2EO-01 15 65239700 65239700 C T ANKDD1A Missense_Mutation p.S413F 0.29 deleterious(0.04) benign(0.114) TCGA-G2-A2EO-01 15 68501972 68501972 C T CLN6 Intron 0.14 TCGA-G2-A2EO-01 15 69325600 69325600 G C NOX5 Missense_Mutation p.D280H 0.20 deleterious(0) benign(0.334) TCGA-G2-A2EO-01 15 71256227 71256227 C T LRRC49 Nonsense_Mutation p.Q298* 0.29 TCGA-G2-A2EO-01 15 74427127 74427127 G C ISLR2 Missense_Mutation p.D678H 0.28 deleterious(0.02) possibly_damaging(0.75) TCGA-G2-A2EO-01 15 75014950 75014950 C T CYP1A1 Silent p.V163V 0.23 TCGA-G2-A2EO-01 15 75977247 75977247 C T CSPG4 Missense_Mutation p.E1427K 0.20 tolerated(0.21) benign(0.028) TCGA-G2-A2EO-01 15 83395260 83395260 G C AC105339.2 3'Flank 0.42 TCGA-G2-A2EO-01 15 89835963 89835963 G C FANCI Missense_Mutation p.K679N 0.32 tolerated(0.1) benign(0.06) TCGA-G2-A2EO-01 15 89836185 89836185 G C FANCI Missense_Mutation p.D728H 0.24 deleterious(0) probably_damaging(0.952) TCGA-G2-A2EO-01 15 90168528 90168528 G C TICRR Missense_Mutation p.D1663H 0.10 deleterious(0) probably_damaging(0.98) TCGA-G2-A2EO-01 15 90799463 90799463 C T TTLL13 Silent p.F213F 0.08 TCGA-G2-A2EO-01 15 90808999 90808999 C T NGRN Missense_Mutation p.R19C 0.25 deleterious(0.03) benign(0.042) TCGA-G2-A2EO-01 15 91456191 91456191 C A MAN2A2 Missense_Mutation p.H852N 0.26 tolerated(0.44) benign(0.063) TCGA-G2-A2EO-01 16 11980398 11980398 G A GSPT1 Missense_Mutation p.H395Y 0.26 tolerated(1) benign(0.002) TCGA-G2-A2EO-01 16 14951394 14951394 G C NOMO1 Missense_Mutation p.E368Q 0.24 deleterious(0.02) benign(0.093) TCGA-G2-A2EO-01 16 15718772 15718772 G C KIAA0430 Silent p.L708L 0.33 TCGA-G2-A2EO-01 16 1642174 1642174 C T IFT140 Intron 0.22 TCGA-G2-A2EO-01 16 1741917 1741917 G A HN1L Silent p.G89G 0.18 TCGA-G2-A2EO-01 16 1810466 1810466 G C MAPK8IP3 Missense_Mutation p.E463Q 0.29 deleterious(0.03) benign(0.253) TCGA-G2-A2EO-01 16 18856931 18856931 C G SMG1 Missense_Mutation p.L2013F 0.17 deleterious(0.02) probably_damaging(0.986) TCGA-G2-A2EO-01 16 19726086 19726086 C G KNOP1 Missense_Mutation p.R91T 0.15 deleterious(0.03) benign(0.288) TCGA-G2-A2EO-01 16 21132097 21132097 C G DNAH3 Missense_Mutation p.E555Q 0.25 tolerated(0.4) benign(0) TCGA-G2-A2EO-01 16 22157565 22157565 G C VWA3A Silent p.V913V 0.29 TCGA-G2-A2EO-01 16 23096215 23096215 G A USP31 Missense_Mutation p.S599F 0.28 tolerated(0.08) possibly_damaging(0.477) TCGA-G2-A2EO-01 16 24801938 24801938 C G TNRC6A Missense_Mutation p.Q659E 0.26 tolerated(0.14) benign(0.304) TCGA-G2-A2EO-01 16 24802034 24802034 C T TNRC6A Nonsense_Mutation p.Q691* 0.27 TCGA-G2-A2EO-01 16 2647748 2647748 C G PDPK1 Missense_Mutation p.P551A 0.27 tolerated(0.14) benign(0.003) TCGA-G2-A2EO-01 16 28603594 28603594 G A SULT1A2 Silent p.F255F 0.22 TCGA-G2-A2EO-01 16 29982897 29982897 C T TMEM219 Intron 0.29 TCGA-G2-A2EO-01 16 3077242 3077242 C T THOC6 Silent p.I257I 0.29 TCGA-G2-A2EO-01 16 30910763 30910763 C T CTF1 Missense_Mutation p.S18L 0.24 deleterious(0.01) possibly_damaging(0.632) TCGA-G2-A2EO-01 16 31075325 31075325 G A ZNF668 Silent p.L175L 0.43 TCGA-G2-A2EO-01 16 31194104 31194104 C G FUS Intron 0.24 TCGA-G2-A2EO-01 16 31500575 31500575 C G SLC5A2 Silent p.L527L 0.22 TCGA-G2-A2EO-01 16 3823904 3823904 G A CREBBP Nonsense_Mutation p.Q771* 0.12 TCGA-G2-A2EO-01 16 4562570 4562570 C G CDIP1 3'UTR 0.17 TCGA-G2-A2EO-01 16 48237196 48237196 G C ABCC11 Silent p.L607L 0.47 TCGA-G2-A2EO-01 16 48329968 48329968 C T LONP2 Silent p.L476L 0.27 TCGA-G2-A2EO-01 16 48595368 48595368 C G N4BP1 Missense_Mutation p.E396Q 0.32 tolerated(0.11) possibly_damaging(0.556) TCGA-G2-A2EO-01 16 53338321 53338321 G C CHD9 Missense_Mutation p.D2135H 0.23 unknown(0) TCGA-G2-A2EO-01 16 53352139 53352139 G A CHD9 Missense_Mutation p.E2518K 0.26 unknown(0) TCGA-G2-A2EO-01 16 54967645 54967645 C T IRX5 Missense_Mutation p.H438Y 0.24 deleterious(0) unknown(0) TCGA-G2-A2EO-01 16 57732921 57732921 C T CCDC135 Silent p.N121N 0.12 TCGA-G2-A2EO-01 16 58319877 58319877 C T PRSS54 Silent p.Q162Q 0.25 TCGA-G2-A2EO-01 16 58621270 58621270 G C CNOT1 Silent p.L119L 0.11 TCGA-G2-A2EO-01 16 66426236 66426236 G C CDH5 Silent p.L389L 0.25 TCGA-G2-A2EO-01 16 66600062 66600062 C T CKLF 3'Flank 0.47 TCGA-G2-A2EO-01 16 67709505 67709505 C T GFOD2 Silent p.V237V 0.26 TCGA-G2-A2EO-01 16 67918030 67918030 C T EDC4 Silent p.L1395L 0.31 TCGA-G2-A2EO-01 16 68293167 68293167 C T PLA2G15 Silent p.F282F 0.23 TCGA-G2-A2EO-01 16 69600204 69600204 G C NFAT5 5'UTR 0.07 TCGA-G2-A2EO-01 16 70589022 70589022 G C SF3B3 Missense_Mutation p.K541N 0.34 tolerated(0.19) probably_damaging(0.948) TCGA-G2-A2EO-01 16 70843806 70843806 C T HYDIN Silent p.L4921L 0.29 TCGA-G2-A2EO-01 16 71571634 71571634 G A CHST4 Missense_Mutation p.D352N 0.15 tolerated(0.22) benign(0.024) TCGA-G2-A2EO-01 16 72156877 72156877 C T PMFBP1 Missense_Mutation p.E902K 0.23 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 16 731803 731803 G C STUB1 Missense_Mutation p.E179Q 0.26 tolerated(0.23) benign(0.004) TCGA-G2-A2EO-01 16 74706420 74706420 G C MLKL Silent p.L466L 0.24 TCGA-G2-A2EO-01 16 74920244 74920244 C A WDR59 Nonsense_Mutation p.E824* 0.27 TCGA-G2-A2EO-01 16 77822778 77822778 C G VAT1L Missense_Mutation p.Q67E 0.30 tolerated(0.97) benign(0.04) TCGA-G2-A2EO-01 16 81960752 81960752 C G PLCG2 Nonsense_Mutation p.S828* 0.28 TCGA-G2-A2EO-01 16 82197748 82197748 C T MPHOSPH6 Missense_Mutation p.E35K 0.26 tolerated(0.15) probably_damaging(0.989) TCGA-G2-A2EO-01 16 85120761 85120761 A G KIAA0513 Missense_Mutation p.N392S 0.21 tolerated(0.17) benign(0.021) TCGA-G2-A2EO-01 16 88706324 88706324 C G IL17C Silent p.L146L 0.32 TCGA-G2-A2EO-01 16 88706361 88706361 C T IL17C Missense_Mutation p.R159C 0.30 deleterious(0) probably_damaging(0.976) TCGA-G2-A2EO-01 16 89611106 89611106 G T SPG7 Missense_Mutation p.D459Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 16 89929889 89929889 C T SPIRE2 Silent p.F527F 0.23 TCGA-G2-A2EO-01 17 10543550 10543550 G C MYH3 Missense_Mutation p.I815M 0.29 deleterious(0) benign(0.19) TCGA-G2-A2EO-01 17 1183661 1183661 C - TUSC5 Frame_Shift_Del p.L124Sfs*45 0.35 TCGA-G2-A2EO-01 17 16525625 16525625 G C ZNF624 Missense_Mutation p.Q859E 0.23 deleterious(0.01) benign(0.15) TCGA-G2-A2EO-01 17 16612919 16612919 G C CCDC144A Missense_Mutation p.L516F 0.36 deleterious(0.01) possibly_damaging(0.766) TCGA-G2-A2EO-01 17 17250309 17250309 C A NT5M 3'UTR 0.39 TCGA-G2-A2EO-01 17 17716007 17716007 G C SREBF1 Missense_Mutation p.R1155G 0.20 deleterious(0) possibly_damaging(0.592) TCGA-G2-A2EO-01 17 19091383 19091383 G A SNORD3A RNA 0.08 TCGA-G2-A2EO-01 17 1946501 1946501 C T DPH1 3'UTR 0.32 TCGA-G2-A2EO-01 17 19642974 19642974 G A ALDH3A1 Silent p.L321L 0.22 TCGA-G2-A2EO-01 17 21102080 21102080 C G TMEM11 Missense_Mutation p.E46Q 0.23 deleterious(0.05) probably_damaging(0.998) TCGA-G2-A2EO-01 17 2202598 2202598 G A SMG6 Silent p.V483V 0.39 TCGA-G2-A2EO-01 17 26688298 26688298 G C TMEM199 3'UTR 0.18 TCGA-G2-A2EO-01 17 27228278 27228278 G A DHRS13 Silent p.L138L 0.07 TCGA-G2-A2EO-01 17 27861196 27861196 G A TAOK1 Missense_Mutation p.E808K 0.58 deleterious(0) probably_damaging(0.987) TCGA-G2-A2EO-01 17 28380455 28380455 G A EFCAB5 Missense_Mutation p.E495K 0.13 tolerated(0.36) benign(0.053) TCGA-G2-A2EO-01 17 29552264 29552264 C G NF1 Missense_Mutation p.S666C 0.14 tolerated(0.23) benign(0.047) TCGA-G2-A2EO-01 17 3030061 3030061 G C OR1G1 Missense_Mutation p.S262C 0.35 deleterious(0.01) benign(0.057) TCGA-G2-A2EO-01 17 30519316 30519316 C G RHOT1 Missense_Mutation p.Q213E 0.18 deleterious(0) probably_damaging(0.982) TCGA-G2-A2EO-01 17 32687497 32687497 G A CCL1 3'UTR 0.16 TCGA-G2-A2EO-01 17 33903113 33903113 G C PEX12 Missense_Mutation p.F256L 0.35 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EO-01 17 34036247 34036247 C T AP2B1 Missense_Mutation p.A820V 0.14 deleterious(0.01) possibly_damaging(0.735) TCGA-G2-A2EO-01 17 34073061 34073061 G A GAS2L2 Silent p.F485F 0.36 TCGA-G2-A2EO-01 17 34076186 34076186 G C GAS2L2 Silent p.V226V 0.11 TCGA-G2-A2EO-01 17 35873046 35873046 C G DUSP14 3'UTR 0.37 TCGA-G2-A2EO-01 17 36715882 36715882 C T SRCIN1 Missense_Mutation p.R655Q 0.23 tolerated(0.45) benign(0.003) TCGA-G2-A2EO-01 17 3779565 3779565 G A CAMKK1 Silent p.F354F 0.36 TCGA-G2-A2EO-01 17 37828996 37828996 G C PGAP3 3'UTR 0.32 TCGA-G2-A2EO-01 17 38551779 38551779 C T TOP2A Missense_Mutation p.E1245K 0.14 tolerated(0.25) benign(0.004) TCGA-G2-A2EO-01 17 38711414 38711414 C T CCR7 Missense_Mutation p.M239I 0.16 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 17 38922677 38922677 G A KRT26 3'UTR 0.29 TCGA-G2-A2EO-01 17 38978738 38978738 G A KRT10 Silent p.L34L 0.27 TCGA-G2-A2EO-01 17 39022938 39022938 C T KRT12 Silent p.G167G 0.23 TCGA-G2-A2EO-01 17 39190504 39190504 G C KRTAP1-3 3'UTR 0.24 TCGA-G2-A2EO-01 17 39580734 39580734 G A KRT37 Silent p.C14C 0.22 TCGA-G2-A2EO-01 17 39580750 39580750 G A KRT37 Missense_Mutation p.S9L 0.23 deleterious(0.04) benign(0.057) TCGA-G2-A2EO-01 17 40025364 40025364 G C ACLY Missense_Mutation p.I1022M 0.04 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 17 40095357 40095357 G C TTC25 RNA 0.19 TCGA-G2-A2EO-01 17 40818866 40818866 C G TUBG2 3'UTR 0.24 TCGA-G2-A2EO-01 17 40818901 40818901 C T TUBG2 3'UTR 0.24 TCGA-G2-A2EO-01 17 40820225 40820225 C A PLEKHH3 Missense_Mutation p.D768Y 0.36 deleterious_low_confidence(0.03) probably_damaging(0.93) TCGA-G2-A2EO-01 17 41879119 41879119 C G MPP3 Missense_Mutation p.E570Q 0.31 tolerated(0.67) possibly_damaging(0.878) TCGA-G2-A2EO-01 17 43037561 43037561 C A C1QL1 Missense_Mutation p.D258Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EO-01 17 44061213 44061213 A T MAPT Missense_Mutation p.E348V 0.21 tolerated(0.09) benign(0.015) TCGA-G2-A2EO-01 17 44076776 44076776 G C STH Missense_Mutation p.R44T 0.19 deleterious_low_confidence(0) benign(0.402) TCGA-G2-A2EO-01 17 44144094 44144094 G A KANSL1 Nonsense_Mutation p.Q553* 0.25 TCGA-G2-A2EO-01 17 4451467 4451467 G A MYBBP1A Silent p.F565F 0.39 TCGA-G2-A2EO-01 17 44626030 44626030 G A LRRC37A2 Silent p.Q1175Q 0.12 TCGA-G2-A2EO-01 17 46023278 46023278 T C PNPO Missense_Mutation p.Y157H 0.31 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EO-01 17 46050952 46050952 G C CDK5RAP3 Missense_Mutation p.K40N 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-G2-A2EO-01 17 4804540 4804540 G C C17orf107 3'UTR 0.26 TCGA-G2-A2EO-01 17 48669297 48669297 G T CACNA1G Splice_Site p.X919_splice 0.56 TCGA-G2-A2EO-01 17 48678510 48678510 G A CACNA1G Missense_Mutation p.R1297H 0.47 deleterious(0.01) probably_damaging(1) TCGA-G2-A2EO-01 17 54893199 54893199 G A C17orf67 5'UTR 0.11 TCGA-G2-A2EO-01 17 57743597 57743597 C G CLTC Missense_Mutation p.P593R 0.08 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 17 57754433 57754433 C G CLTC Missense_Mutation p.L894V 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2EO-01 17 60108955 60108955 G A MED13 Nonsense_Mutation p.Q287* 0.17 TCGA-G2-A2EO-01 17 60342254 60342254 C T TBC1D3P2 3'Flank 0.13 TCGA-G2-A2EO-01 17 60743454 60743454 G T MRC2 Splice_Site p.X174_splice 0.19 TCGA-G2-A2EO-01 17 60743976 60743976 C G MRC2 Missense_Mutation p.I285M 0.19 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EO-01 17 60767311 60767311 G A MRC2 Silent p.Q1210Q 0.11 TCGA-G2-A2EO-01 17 63052692 63052692 G A GNA13 Missense_Mutation p.S7L 0.47 deleterious_low_confidence(0.01) benign(0.355) TCGA-G2-A2EO-01 17 66550954 66550954 C T FAM20A Missense_Mutation p.E202K 0.49 tolerated(0.05) possibly_damaging(0.507) TCGA-G2-A2EO-01 17 66899010 66899010 G C ABCA8 Missense_Mutation p.L830V 0.17 deleterious(0.04) benign(0.011) TCGA-G2-A2EO-01 17 66925208 66925208 G A ABCA8 Silent p.F369F 0.25 TCGA-G2-A2EO-01 17 66980209 66980209 G A ABCA9 Missense_Mutation p.S1496L 0.19 deleterious(0) possibly_damaging(0.694) TCGA-G2-A2EO-01 17 73055613 73055613 G A KCTD2 Silent p.V183V 0.29 TCGA-G2-A2EO-01 17 73089809 73089809 C T SLC16A5 Silent p.L26L 0.24 TCGA-G2-A2EO-01 17 74056437 74056437 C T SRP68 Missense_Mutation p.M263I 0.18 deleterious(0.01) possibly_damaging(0.729) TCGA-G2-A2EO-01 17 74068563 74068563 C T SRP68 Missense_Mutation p.E4K 0.22 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-G2-A2EO-01 17 74283954 74283955 CC - QRICH2 Frame_Shift_Del p.E1109Rfs*29 0.25 TCGA-G2-A2EO-01 17 74387651 74387651 G A UBE2O Silent p.F1084F 0.26 TCGA-G2-A2EO-01 17 74732523 74732523 C A SRSF2 Missense_Mutation p.R129L 0.16 tolerated(0.06) unknown(0) TCGA-G2-A2EO-01 17 7480991 7480991 G T EIF4A1 Missense_Mutation p.K291N 0.18 deleterious(0.02) probably_damaging(0.948) TCGA-G2-A2EO-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.38 deleterious(0) probably_damaging(0.947) TCGA-G2-A2EO-01 17 76451810 76451810 G A DNAH17 Silent p.F3348F 0.27 TCGA-G2-A2EO-01 17 76870026 76870026 G A TIMP2 Intron 0.26 TCGA-G2-A2EO-01 17 7761959 7761959 G A CYB5D1 Silent p.L91L 0.40 TCGA-G2-A2EO-01 17 77807675 77807675 G A CBX4 3'UTR 0.21 TCGA-G2-A2EO-01 17 78115614 78115614 G A EIF4A3 Silent p.F92F 0.27 TCGA-G2-A2EO-01 17 78115643 78115643 G A EIF4A3 Nonsense_Mutation p.Q83* 0.21 TCGA-G2-A2EO-01 17 78359383 78359383 C G RNF213 Missense_Mutation p.S4834C 0.19 probably_damaging(0.999) TCGA-G2-A2EO-01 17 79263557 79263557 G A SLC38A10 Missense_Mutation p.H51Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 17 8076868 8076868 C T TMEM107 3'Flank 0.45 TCGA-G2-A2EO-01 17 8794166 8794166 C G PIK3R5 Silent p.L182L 0.21 TCGA-G2-A2EO-01 18 12277328 12277328 G A CIDEA 3'UTR 0.25 TCGA-G2-A2EO-01 18 12706694 12706694 C G PSMG2 Nonsense_Mutation p.S68* 0.27 TCGA-G2-A2EO-01 18 19780746 19780746 C A GATA6 Missense_Mutation p.S583Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EO-01 18 20564853 20564853 G A RBBP8 Missense_Mutation p.M203I 0.13 deleterious(0.02) benign(0) TCGA-G2-A2EO-01 18 21494446 21494446 G C LAMA3 Missense_Mutation p.E2468Q 0.06 probably_damaging(0.944) TCGA-G2-A2EO-01 18 24445680 24445680 C T AQP4 5'UTR 0.28 TCGA-G2-A2EO-01 18 28673588 28673588 C G DSC2 Missense_Mutation p.D30H 0.28 deleterious(0.03) benign(0.084) TCGA-G2-A2EO-01 18 29126602 29126602 C G DSG2 Missense_Mutation p.L1085V 0.22 tolerated(0.44) benign(0.006) TCGA-G2-A2EO-01 18 29340499 29340499 G T SLC25A52 Missense_Mutation p.F52L 0.28 tolerated(0.11) benign(0.072) TCGA-G2-A2EO-01 18 29848662 29848662 C A GAREM Silent p.V601V 0.22 TCGA-G2-A2EO-01 18 34839145 34839145 G A CELF4 Silent p.F444F 0.26 TCGA-G2-A2EO-01 18 43221187 43221187 C A SLC14A2 Silent p.A335A 0.09 TCGA-G2-A2EO-01 18 43310353 43310353 C - SLC14A1 Frame_Shift_Del p.S79Cfs*20 0.25 TCGA-G2-A2EO-01 18 44559892 44559892 C G TCEB3B Missense_Mutation p.D582H 0.09 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 18 44702592 44702592 G T IER3IP1 Silent p.I19I 0.25 TCGA-G2-A2EO-01 18 47918545 47918545 G A SKA1 Silent p.L232L 0.29 TCGA-G2-A2EO-01 18 5398076 5398076 G A EPB41L3 Nonsense_Mutation p.R806* 0.13 TCGA-G2-A2EO-01 18 55322535 55322535 C T ATP8B1 Missense_Mutation p.R941Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EO-01 18 56585882 56585882 G A ZNF532 Silent p.L121L 0.17 TCGA-G2-A2EO-01 18 61647057 61647057 G A SERPINB8 Missense_Mutation p.G64E 0.23 tolerated(1) benign(0.01) TCGA-G2-A2EO-01 18 77917935 77917935 C T PARD6G Missense_Mutation p.V284I 0.22 tolerated(0.65) benign(0.002) TCGA-G2-A2EO-01 18 9255144 9255144 G A ANKRD12 Missense_Mutation p.E627K 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.488) TCGA-G2-A2EO-01 19 10163020 10163020 G C C3P1 RNA 0.21 TCGA-G2-A2EO-01 19 10250949 10250949 G A DNMT1 Silent p.F1193F 0.23 TCGA-G2-A2EO-01 19 10335096 10335096 G A S1PR2 Silent p.L162L 0.29 TCGA-G2-A2EO-01 19 1043124 1043124 G A ABCA7 Missense_Mutation p.E222K 0.18 tolerated(0.12) benign(0.293) TCGA-G2-A2EO-01 19 10461569 10461569 G A TYK2 Silent p.L1169L 0.22 TCGA-G2-A2EO-01 19 1068607 1068607 G A HMHA1 Silent p.L111L 0.21 TCGA-G2-A2EO-01 19 11121153 11121153 G A SMARCA4 Silent p.E740E 0.29 TCGA-G2-A2EO-01 19 11121155 11121155 G A SMARCA4 Missense_Mutation p.R741K 0.30 benign(0.004) TCGA-G2-A2EO-01 19 11277264 11277264 C G KANK2 Missense_Mutation p.E850D 0.13 tolerated(0.09) probably_damaging(0.991) TCGA-G2-A2EO-01 19 11892012 11892012 C G ZNF441 Missense_Mutation p.S458C 0.38 tolerated(0.24) probably_damaging(0.937) TCGA-G2-A2EO-01 19 11892189 11892189 C T ZNF441 Missense_Mutation p.S517L 0.34 tolerated(0.44) benign(0.246) TCGA-G2-A2EO-01 19 12061258 12061258 G C ZNF700 3'UTR 0.20 TCGA-G2-A2EO-01 19 12125889 12125889 G C ZNF433 Missense_Mutation p.S598C 0.19 deleterious(0) possibly_damaging(0.508) TCGA-G2-A2EO-01 19 12126042 12126042 G T ZNF433 Nonsense_Mutation p.S547* 0.20 TCGA-G2-A2EO-01 19 1230812 1230812 C G C19orf26 3'UTR 0.16 TCGA-G2-A2EO-01 19 12490679 12490679 G A CTD-3105H18.14 3'UTR 0.29 TCGA-G2-A2EO-01 19 12739289 12739289 C G ZNF791 Missense_Mutation p.Q316E 0.17 deleterious(0.04) benign(0.238) TCGA-G2-A2EO-01 19 12903392 12903392 C G JUNB Missense_Mutation p.I269M 0.18 deleterious(0.04) possibly_damaging(0.81) TCGA-G2-A2EO-01 19 13007200 13007200 G C GCDH Missense_Mutation p.E273Q 0.14 deleterious_low_confidence(0.02) benign(0.007) TCGA-G2-A2EO-01 19 13218411 13218411 G A TRMT1 Silent p.F520F 0.45 TCGA-G2-A2EO-01 19 13397314 13397314 C T CACNA1A Intron 0.27 TCGA-G2-A2EO-01 19 14265979 14265979 T C LPHN1 Intron 0.25 TCGA-G2-A2EO-01 19 15349940 15349940 C T BRD4 Missense_Mutation p.E1238K 0.50 benign(0.292) TCGA-G2-A2EO-01 19 15760750 15760750 C G CYP4F3 Missense_Mutation p.I225M 0.21 deleterious(0) possibly_damaging(0.794) TCGA-G2-A2EO-01 19 17452360 17452360 G A GTPBP3 Missense_Mutation p.D475N 0.12 tolerated(0.21) benign(0.012) TCGA-G2-A2EO-01 19 17631815 17631815 G A PGLS Silent p.G234G 0.31 TCGA-G2-A2EO-01 19 17838864 17838864 G A MAP1S Missense_Mutation p.G891S 0.26 tolerated(0.69) benign(0.005) TCGA-G2-A2EO-01 19 18047225 18047225 G A CCDC124 5'UTR 0.20 TCGA-G2-A2EO-01 19 18684102 18684102 G A UBA52 Splice_Site 0.17 TCGA-G2-A2EO-01 19 19334931 19334931 C G NCAN Missense_Mutation p.R193G 0.21 tolerated(0.3) probably_damaging(0.999) TCGA-G2-A2EO-01 19 22940381 22940381 C T ZNF99 Missense_Mutation p.R777K 0.12 tolerated(0.11) benign(0.002) TCGA-G2-A2EO-01 19 22940551 22940551 A C ZNF99 Silent p.L720L 0.19 TCGA-G2-A2EO-01 19 23578152 23578152 G A ZNF91 Missense_Mutation p.P2L 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.713) TCGA-G2-A2EO-01 19 2853858 2853858 C T ZNF555 Missense_Mutation p.P599S 0.15 tolerated_low_confidence(0.12) benign(0.006) TCGA-G2-A2EO-01 19 2873567 2873567 G C ZNF556 Missense_Mutation p.R26T 0.24 deleterious(0) probably_damaging(0.988) TCGA-G2-A2EO-01 19 32873422 32873422 C A ZNF507 Missense_Mutation p.H804N 0.24 deleterious(0) benign(0.403) TCGA-G2-A2EO-01 19 32973094 32973094 G C DPY19L3 Missense_Mutation p.R700T 0.36 deleterious(0) benign(0.196) TCGA-G2-A2EO-01 19 33490610 33490610 C T RHPN2 Silent p.V369V 0.30 TCGA-G2-A2EO-01 19 34791277 34791277 G C KIAA0355 5'UTR 0.26 TCGA-G2-A2EO-01 19 34791501 34791501 G A KIAA0355 Silent p.L41L 0.26 TCGA-G2-A2EO-01 19 35523533 35523533 G C SCN1B Missense_Mutation p.E48Q 0.18 deleterious(0.03) probably_damaging(0.954) TCGA-G2-A2EO-01 19 35758329 35758329 G A LSR Missense_Mutation p.D536N 0.21 tolerated(0.2) benign(0.004) TCGA-G2-A2EO-01 19 36054367 36054367 C T ATP4A Silent p.K25K 0.20 TCGA-G2-A2EO-01 19 36230880 36230880 T C IGFLR1 Missense_Mutation p.E151G 0.42 tolerated(0.29) benign(0) TCGA-G2-A2EO-01 19 36230990 36230990 C T IGFLR1 Splice_Site p.X115_splice 0.08 TCGA-G2-A2EO-01 19 36235278 36235278 C G U2AF1L4 Missense_Mutation p.E59D 0.17 tolerated(0.19) benign(0.261) TCGA-G2-A2EO-01 19 38882867 38882867 C T SPRED3 Missense_Mutation p.S121F 0.40 deleterious(0.01) benign(0.154) TCGA-G2-A2EO-01 19 39017663 39017663 C G RYR1 Missense_Mutation p.L3553V 0.10 benign(0.043) TCGA-G2-A2EO-01 19 39034011 39034011 A C RYR1 Missense_Mutation p.Q3905P 0.15 benign(0.004) TCGA-G2-A2EO-01 19 3924690 3924690 G A ATCAY 3'UTR 0.56 TCGA-G2-A2EO-01 19 39804678 39804678 G C LRFN1 Silent p.L433L 0.13 TCGA-G2-A2EO-01 19 39804803 39804803 G C LRFN1 Missense_Mutation p.L392V 0.13 tolerated(0.29) benign(0.277) TCGA-G2-A2EO-01 19 39805227 39805227 G A LRFN1 Silent p.G250G 0.12 TCGA-G2-A2EO-01 19 3985415 3985415 G T EEF2 5'UTR 0.32 TCGA-G2-A2EO-01 19 39882056 39882056 G C MED29 Silent p.A19A 0.21 TCGA-G2-A2EO-01 19 40902007 40902007 G C PRX Nonsense_Mutation p.S751* 0.20 TCGA-G2-A2EO-01 19 41029487 41029487 G C SPTBN4 Silent p.L1266L 0.22 TCGA-G2-A2EO-01 19 41384835 41384835 C G CYP2A7 Missense_Mutation p.E221Q 0.23 tolerated(0.21) probably_damaging(0.982) TCGA-G2-A2EO-01 19 42791575 42791575 G C CIC Missense_Mutation p.E186Q 0.15 benign(0.138) TCGA-G2-A2EO-01 19 4408975 4408975 C T CHAF1A Missense_Mutation p.S60F 0.32 tolerated(0.49) possibly_damaging(0.485) TCGA-G2-A2EO-01 19 4453979 4453979 C T UBXN6 Silent p.Q65Q 0.27 TCGA-G2-A2EO-01 19 45262794 45262794 C T BCL3 Silent p.P429P 0.05 TCGA-G2-A2EO-01 19 45873538 45873538 C G ERCC2 Intron 0.17 TCGA-G2-A2EO-01 19 45976195 45976195 C T FOSB Silent p.F314F 0.12 TCGA-G2-A2EO-01 19 46215530 46215530 G T FBXO46 Silent p.L408L 0.12 TCGA-G2-A2EO-01 19 47535945 47535945 C G NPAS1 Missense_Mutation p.F159L 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-G2-A2EO-01 19 47535976 47535976 C T NPAS1 Silent p.L170L 0.20 TCGA-G2-A2EO-01 19 47856631 47856631 C T DHX34 Missense_Mutation p.T115M 0.14 tolerated(0.15) benign(0.004) TCGA-G2-A2EO-01 19 47998837 47998837 C G NAPA Missense_Mutation p.L104F 0.08 tolerated(0.07) benign(0.224) TCGA-G2-A2EO-01 19 48248803 48248803 C T GLTSCR2 5'UTR 0.18 TCGA-G2-A2EO-01 19 48801464 48801464 G T CCDC114 Silent p.L421L 0.20 TCGA-G2-A2EO-01 19 49238679 49238679 G A RASIP1 Missense_Mutation p.S318L 0.24 tolerated(0.1) benign(0.354) TCGA-G2-A2EO-01 19 49436972 49436972 C G DHDH 5'UTR 0.32 TCGA-G2-A2EO-01 19 49661463 49661463 G T TRPM4 Missense_Mutation p.K13N 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-G2-A2EO-01 19 49661514 49661514 G A TRPM4 Silent p.P30P 0.14 TCGA-G2-A2EO-01 19 50029338 50029338 G A FCGRT Missense_Mutation p.D354N 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-G2-A2EO-01 19 51165245 51165245 G A SHANK1 Missense_Mutation p.L2155F 0.23 unknown(0) TCGA-G2-A2EO-01 19 51293713 51293713 C G ACPT Silent p.L14L 0.17 TCGA-G2-A2EO-01 19 51958762 51958762 T C SIGLEC8 Missense_Mutation p.R321G 0.12 tolerated(0.98) benign(0.001) TCGA-G2-A2EO-01 19 52272587 52272587 G T FPR2 Missense_Mutation p.A226S 0.42 tolerated(0.07) benign(0.257) TCGA-G2-A2EO-01 19 52719275 52719275 C T PPP2R1A Missense_Mutation p.S314L 0.44 tolerated(0.08) benign(0.011) TCGA-G2-A2EO-01 19 53856074 53856074 G C ZNF845 Missense_Mutation p.E716Q 0.24 deleterious(0.02) benign(0.21) TCGA-G2-A2EO-01 19 54188280 54188280 C G MIR515-2 RNA 0.39 TCGA-G2-A2EO-01 19 54933464 54933464 G C TTYH1 Missense_Mutation p.R173P 0.27 deleterious(0.02) probably_damaging(1) TCGA-G2-A2EO-01 19 55420603 55420603 G A NCR1 Splice_Site p.X119_splice 0.07 TCGA-G2-A2EO-01 19 55570559 55570559 G A RDH13 Silent p.I50I 0.50 TCGA-G2-A2EO-01 19 57036421 57036421 G A ZNF471 Missense_Mutation p.D329N 0.19 tolerated(0.18) probably_damaging(0.993) TCGA-G2-A2EO-01 19 58049333 58049333 G A ZNF549 Missense_Mutation p.E321K 0.18 tolerated(0.28) benign(0.044) TCGA-G2-A2EO-01 19 58850581 58850581 G C ZSCAN22 Missense_Mutation p.Q455H 0.10 deleterious(0) benign(0.242) TCGA-G2-A2EO-01 19 58850597 58850597 G C ZSCAN22 Missense_Mutation p.E461Q 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-G2-A2EO-01 19 58850749 58850749 G C ZSCAN22 3'UTR 0.16 TCGA-G2-A2EO-01 19 59025544 59025544 C T ZBTB45 Silent p.K471K 0.16 TCGA-G2-A2EO-01 19 6928195 6928195 C T EMR1 Silent p.F754F 0.28 TCGA-G2-A2EO-01 19 7569023 7569023 C T C19orf45 Silent p.L198L 0.16 TCGA-G2-A2EO-01 19 7968919 7968919 C G MAP2K7 Silent p.L30L 0.18 TCGA-G2-A2EO-01 19 8032455 8032455 C G ELAVL1 Missense_Mutation p.R217T 0.24 tolerated(0.11) possibly_damaging(0.661) TCGA-G2-A2EO-01 19 9084097 9084097 G A MUC16 Missense_Mutation p.S2573F 0.21 unknown(0) TCGA-G2-A2EO-01 19 9086405 9086405 C T MUC16 Missense_Mutation p.E1804K 0.27 unknown(0) TCGA-G2-A2EO-01 19 9090786 9090786 G C MUC16 Silent p.V343V 0.23 TCGA-G2-A2EO-01 19 9801233 9801233 G A ZNF812 Nonsense_Mutation p.Q316* 0.24 TCGA-G2-A2EO-01 19 9801284 9801284 G A ZNF812 Missense_Mutation p.H299Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-G2-A2EO-01 19 9801374 9801374 G C ZNF812 Missense_Mutation p.Q269E 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-G2-A2EO-01 19 9801562 9801562 G A ZNF812 Missense_Mutation p.S206L 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-G2-A2EO-01 1 101387384 101387384 C G SLC30A7 Missense_Mutation p.L277V 0.14 deleterious(0) probably_damaging(0.982) TCGA-G2-A2EO-01 1 103478004 103478004 C T COL11A1 Missense_Mutation p.G532S 0.26 probably_damaging(1) TCGA-G2-A2EO-01 1 110301959 110301959 C T EPS8L3 Silent p.A102A 0.32 TCGA-G2-A2EO-01 1 11116794 11116794 C A SRM Missense_Mutation p.K134N 0.17 deleterious(0) probably_damaging(0.989) TCGA-G2-A2EO-01 1 112309338 112309338 G C DDX20 Silent p.L764L 0.10 TCGA-G2-A2EO-01 1 113159453 113159453 C T ST7L Silent p.L90L 0.08 TCGA-G2-A2EO-01 1 115236063 115236063 C A AMPD1 Nonsense_Mutation p.E43* 0.22 TCGA-G2-A2EO-01 1 116935566 116935566 G A ATP1A1 Missense_Mutation p.A475T 0.11 tolerated(0.16) benign(0.001) TCGA-G2-A2EO-01 1 11980319 11980319 C T KIAA2013 3'UTR 0.15 TCGA-G2-A2EO-01 1 120461054 120461054 C T NOTCH2 Silent p.A1968A 0.09 TCGA-G2-A2EO-01 1 12326961 12326961 C G VPS13D Missense_Mutation p.L540V 0.33 probably_damaging(0.916) TCGA-G2-A2EO-01 1 12336868 12336868 G C VPS13D Missense_Mutation p.E1075Q 0.28 benign(0.031) TCGA-G2-A2EO-01 1 12837792 12837792 T C PRAMEF12 3'UTR 0.38 TCGA-G2-A2EO-01 1 145293519 145293519 C G NBPF10 Silent p.L38L 0.07 TCGA-G2-A2EO-01 1 145440314 145440314 G T TXNIP Missense_Mutation p.R207L 0.33 deleterious(0) probably_damaging(0.981) TCGA-G2-A2EO-01 1 145473774 145473774 C T ANKRD34A Missense_Mutation p.S149L 0.17 deleterious(0.02) possibly_damaging(0.639) TCGA-G2-A2EO-01 1 147096327 147096327 G A BCL9 Missense_Mutation p.R1283K 0.17 tolerated(0.07) probably_damaging(0.952) TCGA-G2-A2EO-01 1 149858021 149858021 G A HIST2H2BE Missense_Mutation p.S57F 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-G2-A2EO-01 1 150960575 150960575 C T ANXA9 Nonsense_Mutation p.Q236* 0.31 TCGA-G2-A2EO-01 1 151261860 151261860 C T ZNF687 Silent p.I826I 0.30 TCGA-G2-A2EO-01 1 151262612 151262612 C A ZNF687 Missense_Mutation p.F993L 0.21 deleterious(0) probably_damaging(0.984) TCGA-G2-A2EO-01 1 151262619 151262619 C A ZNF687 Missense_Mutation p.R996S 0.21 deleterious(0.03) possibly_damaging(0.776) TCGA-G2-A2EO-01 1 151262635 151262635 C T ZNF687 Missense_Mutation p.S1001F 0.19 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 1 151262637 151262637 T C ZNF687 Missense_Mutation p.F1002L 0.21 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EO-01 1 151263516 151263516 C G ZNF687 Nonsense_Mutation p.S1182* 0.28 TCGA-G2-A2EO-01 1 151263796 151263796 C G ZNF687 3'UTR 0.47 TCGA-G2-A2EO-01 1 152058710 152058710 C T TCHHL1 Missense_Mutation p.S483N 0.29 tolerated(0.17) benign(0.051) TCGA-G2-A2EO-01 1 152659594 152659594 G C LCE2B Missense_Mutation p.C92S 0.23 tolerated_low_confidence(0.88) unknown(0) TCGA-G2-A2EO-01 1 154574803 154574803 C G ADAR Missense_Mutation p.Q105H 0.35 tolerated(0.62) benign(0.002) TCGA-G2-A2EO-01 1 155100432 155100432 C G EFNA1 5'UTR 0.38 TCGA-G2-A2EO-01 1 155109406 155109406 T C SLC50A1 Silent p.Y87Y 0.06 TCGA-G2-A2EO-01 1 155313492 155313492 C T ASH1L Missense_Mutation p.D2675N 0.10 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-G2-A2EO-01 1 155796774 155796774 G A GON4L Missense_Mutation p.S184L 0.15 tolerated_low_confidence(0.41) benign(0) TCGA-G2-A2EO-01 1 156126258 156126258 G C SEMA4A Missense_Mutation p.D65H 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-G2-A2EO-01 1 156617443 156617443 G C BCAN Missense_Mutation p.D204H 0.12 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EO-01 1 156912573 156912573 C G ARHGEF11 Splice_Site p.X1079_splice 0.42 TCGA-G2-A2EO-01 1 157514314 157514314 C T FCRL5 Silent p.L194L 0.34 TCGA-G2-A2EO-01 1 158064676 158064676 C A KIRREL Missense_Mutation p.S680R 0.14 tolerated(0.08) benign(0.265) TCGA-G2-A2EO-01 1 158581041 158581041 G A SPTA1 3'UTR 0.37 TCGA-G2-A2EO-01 1 159284102 159284102 G A OR10J3 Silent p.L116L 0.16 TCGA-G2-A2EO-01 1 160136489 160136489 G T ATP1A4 Nonsense_Mutation p.E407* 0.12 TCGA-G2-A2EO-01 1 161046192 161046192 G C PVRL4 Silent p.L268L 0.15 TCGA-G2-A2EO-01 1 162468057 162468057 C T UHMK1 Silent p.I89I 0.17 TCGA-G2-A2EO-01 1 1638931 1638931 C T CDK11A Missense_Mutation p.E388K 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-G2-A2EO-01 1 16532692 16532692 G C ARHGEF19 Silent p.V427V 0.26 TCGA-G2-A2EO-01 1 166039523 166039523 C T FAM78B Nonsense_Mutation p.W247* 0.18 TCGA-G2-A2EO-01 1 166845422 166845422 C A TADA1 Nonsense_Mutation p.E17* 0.15 TCGA-G2-A2EO-01 1 167871010 167871010 C T ADCY10 Missense_Mutation p.R109Q 0.15 tolerated(0.38) possibly_damaging(0.577) TCGA-G2-A2EO-01 1 167871047 167871047 C G ADCY10 Intron 0.15 TCGA-G2-A2EO-01 1 168054780 168054780 C T GPR161 Missense_Mutation p.E547K 0.17 tolerated_low_confidence(0.15) benign(0.035) TCGA-G2-A2EO-01 1 171251468 171251468 G C FMO1 Silent p.L393L 0.12 TCGA-G2-A2EO-01 1 180283851 180283851 C G ACBD6 Missense_Mutation p.E224Q 0.12 deleterious(0.03) probably_damaging(0.957) TCGA-G2-A2EO-01 1 182921966 182921966 C G SHCBP1L Missense_Mutation p.E101D 0.31 tolerated(0.09) benign(0.003) TCGA-G2-A2EO-01 1 186322927 186322927 G A TPR Missense_Mutation p.H743Y 0.12 benign(0.001) TCGA-G2-A2EO-01 1 18808555 18808555 C T KLHDC7A Silent p.F360F 0.19 TCGA-G2-A2EO-01 1 190424050 190424050 C G BRINP3 5'UTR 0.22 TCGA-G2-A2EO-01 1 19494588 19494588 G T UBR4 Missense_Mutation p.L1278M 0.31 probably_damaging(0.929) TCGA-G2-A2EO-01 1 196251455 196251455 G C KCNT2 Missense_Mutation p.T910R 0.10 deleterious(0) probably_damaging(0.986) TCGA-G2-A2EO-01 1 196797272 196797272 C T CFHR1 Missense_Mutation p.S168F 0.41 deleterious(0.04) unknown(0) TCGA-G2-A2EO-01 1 200617569 200617569 G C DDX59 Missense_Mutation p.Q532E 0.33 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 1 200967564 200967564 C G KIF21B Missense_Mutation p.Q675H 0.18 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EO-01 1 201981484 201981484 C T ELF3 Missense_Mutation p.S133F 0.15 tolerated(0.06) possibly_damaging(0.629) TCGA-G2-A2EO-01 1 201981809 201981809 C T ELF3 Nonsense_Mutation p.Q174* 0.16 TCGA-G2-A2EO-01 1 203734754 203734754 C G LAX1 Missense_Mutation p.L21V 0.13 tolerated(0.13) benign(0.077) TCGA-G2-A2EO-01 1 20440580 20440580 G A PLA2G2D 3'UTR 0.23 TCGA-G2-A2EO-01 1 204438482 204438482 G C PIK3C2B Missense_Mutation p.S150C 0.08 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-G2-A2EO-01 1 204942505 204942505 G A NFASC Missense_Mutation p.E413K 0.29 tolerated(0.13) benign(0.431) TCGA-G2-A2EO-01 1 205589767 205589767 G T ELK4 Missense_Mutation p.S136Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-G2-A2EO-01 1 205628644 205628644 G C SLC45A3 Silent p.L460L 0.22 TCGA-G2-A2EO-01 1 205892252 205892252 C T SLC26A9 Missense_Mutation p.M577I 0.18 tolerated(0.2) benign(0) TCGA-G2-A2EO-01 1 206652436 206652436 C G IKBKE Silent p.L381L 0.28 TCGA-G2-A2EO-01 1 206772966 206772966 C T EIF2D Silent p.R351R 0.14 TCGA-G2-A2EO-01 1 209974644 209974644 G C IRF6 Missense_Mutation p.P39A 0.11 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 1 209974759 209974759 G C IRF6 Intron 0.08 TCGA-G2-A2EO-01 1 214505378 214505378 G A SMYD2 Missense_Mutation p.E319K 0.15 tolerated(0.31) benign(0.003) TCGA-G2-A2EO-01 1 221875734 221875734 C G DUSP10 3'UTR 0.32 TCGA-G2-A2EO-01 1 221876002 221876002 C G DUSP10 Missense_Mutation p.G401R 0.25 deleterious(0.03) probably_damaging(1) TCGA-G2-A2EO-01 1 228290054 228290054 C G C1orf35 Missense_Mutation p.R135P 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-G2-A2EO-01 1 231664538 231664538 C A TSNAX 5'UTR 0.39 TCGA-G2-A2EO-01 1 233314877 233314877 G A PCNXL2 Silent p.F1037F 0.15 TCGA-G2-A2EO-01 1 237819236 237819236 C T RYR2 Missense_Mutation p.S2694L 0.29 possibly_damaging(0.78) TCGA-G2-A2EO-01 1 245027660 245027660 C T HNRNPU 5'UTR 0.38 TCGA-G2-A2EO-01 1 246811273 246811273 G A CNST Silent p.E590E 0.26 TCGA-G2-A2EO-01 1 246923504 246923504 C G SCCPDH Nonsense_Mutation p.S322* 0.37 TCGA-G2-A2EO-01 1 247875277 247875277 G A OR6F1 Missense_Mutation p.R261C 0.16 deleterious(0.02) benign(0.168) TCGA-G2-A2EO-01 1 248458107 248458107 C T OR2T12 Missense_Mutation p.M258I 0.17 tolerated(0.05) benign(0.158) TCGA-G2-A2EO-01 1 248652147 248652147 C T OR2T5 Silent p.L86L 0.19 TCGA-G2-A2EO-01 1 25167380 25167380 G A CLIC4 Silent p.K238K 0.31 TCGA-G2-A2EO-01 1 27332842 27332842 G A FAM46B Missense_Mutation p.R291W 0.17 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 1 28285408 28285408 C G SMPDL3B 3'UTR 0.38 TCGA-G2-A2EO-01 1 28300866 28300866 G C EYA3 3'UTR 0.26 TCGA-G2-A2EO-01 1 28931934 28931934 C T TAF12 Missense_Mutation p.E134K 0.27 deleterious(0) benign(0.103) TCGA-G2-A2EO-01 1 32162818 32162818 C T COL16A1 Intron 0.23 TCGA-G2-A2EO-01 1 32202150 32202150 G C BAI2 Intron 0.13 TCGA-G2-A2EO-01 1 32669900 32669900 G C CCDC28B Missense_Mutation p.E149Q 0.13 tolerated_low_confidence(0.24) possibly_damaging(0.728) TCGA-G2-A2EO-01 1 32670262 32670262 G C CCDC28B Intron 0.18 TCGA-G2-A2EO-01 1 33585634 33585634 C G ADC Intron 0.13 TCGA-G2-A2EO-01 1 33985159 33985159 C T CSMD2 Missense_Mutation p.E3475K 0.19 deleterious(0.04) benign(0.402) TCGA-G2-A2EO-01 1 3421837 3421837 T C MEGF6 Missense_Mutation p.D708G 0.15 deleterious(0) possibly_damaging(0.589) TCGA-G2-A2EO-01 1 36202663 36202663 G C CLSPN Nonsense_Mutation p.S1254* 0.16 TCGA-G2-A2EO-01 1 36927747 36927747 C T MRPS15 Missense_Mutation p.D65N 0.44 tolerated(0.1) benign(0.037) TCGA-G2-A2EO-01 1 3782299 3782299 C T DFFB Intron 0.18 TCGA-G2-A2EO-01 1 38192827 38192827 G A EPHA10 Silent p.I573I 0.19 TCGA-G2-A2EO-01 1 39879406 39879406 G A KIAA0754 Missense_Mutation p.A1021T 0.15 possibly_damaging(0.695) TCGA-G2-A2EO-01 1 40131848 40131848 C G NT5C1A Missense_Mutation p.E66Q 0.17 deleterious(0.01) possibly_damaging(0.612) TCGA-G2-A2EO-01 1 41461810 41461810 C G CTPS1 Intron 0.32 TCGA-G2-A2EO-01 1 43889974 43889974 C G SZT2 Nonsense_Mutation p.S781* 0.16 TCGA-G2-A2EO-01 1 43896036 43896036 G C SZT2 Missense_Mutation p.E1429Q 0.32 deleterious(0.02) possibly_damaging(0.895) TCGA-G2-A2EO-01 1 43896196 43896196 G T SZT2 Nonsense_Mutation p.E1447* 0.34 TCGA-G2-A2EO-01 1 43905590 43905590 G C SZT2 Missense_Mutation p.E2304Q 0.37 deleterious(0.02) probably_damaging(0.98) TCGA-G2-A2EO-01 1 43908143 43908143 G C SZT2 Missense_Mutation p.D2612H 0.29 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 1 45472910 45472910 C T HECTD3 Missense_Mutation p.E513K 0.16 tolerated(0.21) benign(0.097) TCGA-G2-A2EO-01 1 45671765 45671765 G T ZSWIM5 Missense_Mutation p.F86L 0.29 tolerated(0.09) probably_damaging(0.981) TCGA-G2-A2EO-01 1 47399996 47399996 C T CYP4A11 Missense_Mutation p.E314K 0.33 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EO-01 1 47610264 47610264 G A CYP4A22 Missense_Mutation p.E314K 0.10 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 1 52283797 52283797 G C NRD1 Missense_Mutation p.I502M 0.17 deleterious(0) benign(0.42) TCGA-G2-A2EO-01 1 55595217 55595217 C T USP24 Missense_Mutation p.D1190N 0.12 tolerated(0.19) benign(0.039) TCGA-G2-A2EO-01 1 65243754 65243754 C T RAVER2 Silent p.V255V 0.32 TCGA-G2-A2EO-01 1 6589194 6589194 G C NOL9 Missense_Mutation p.S562C 0.11 tolerated(0.67) benign(0.114) TCGA-G2-A2EO-01 1 67436578 67436578 G A MIER1 Missense_Mutation p.R287K 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-G2-A2EO-01 1 72748216 72748216 C T NEGR1 5'UTR 0.12 TCGA-G2-A2EO-01 1 77627290 77627290 C G PIGK Missense_Mutation p.D231H 0.17 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 1 82409390 82409390 G A LPHN2 Missense_Mutation p.V379M 0.20 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 1 8424172 8424172 C G RERE Missense_Mutation p.E562Q 0.14 probably_damaging(0.979) TCGA-G2-A2EO-01 1 89449287 89449287 C A RBMXL1 Missense_Mutation p.D75Y 0.24 deleterious(0.02) probably_damaging(0.979) TCGA-G2-A2EO-01 1 89486323 89486323 G T GBP3 Missense_Mutation p.L28M 0.25 deleterious(0) probably_damaging(0.993) TCGA-G2-A2EO-01 1 92184913 92184913 G A TGFBR3 Missense_Mutation p.R508W 0.34 tolerated(0.13) benign(0.056) TCGA-G2-A2EO-01 1 93091443 93091443 C T EVI5 Missense_Mutation p.E510K 0.39 deleterious(0.01) probably_damaging(0.982) TCGA-G2-A2EO-01 1 94655506 94655506 G A ARHGAP29 Missense_Mutation p.S472L 0.14 tolerated(0.31) benign(0.146) TCGA-G2-A2EO-01 20 1447415 1447415 C A NSFL1C Nonsense_Mutation p.E19* 0.23 TCGA-G2-A2EO-01 20 18286394 18286394 C T ZNF133 Nonsense_Mutation p.Q22* 0.31 TCGA-G2-A2EO-01 20 20177312 20177312 C G C20orf26 Silent p.L563L 0.26 TCGA-G2-A2EO-01 20 23028421 23028421 C T THBD Missense_Mutation p.R574K 0.43 tolerated_low_confidence(1) benign(0) TCGA-G2-A2EO-01 20 25297681 25297681 C T ABHD12 Intron 0.29 TCGA-G2-A2EO-01 20 2776510 2776510 C A CPXM1 Missense_Mutation p.W485C 0.22 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 20 33370146 33370146 C G NCOA6 Missense_Mutation p.D5H 0.22 probably_damaging(0.969) TCGA-G2-A2EO-01 20 33762609 33762609 G A PROCR Missense_Mutation p.E59K 0.27 deleterious(0.02) benign(0.125) TCGA-G2-A2EO-01 20 33762683 33762683 G C PROCR Missense_Mutation p.Q83H 0.39 deleterious(0.01) possibly_damaging(0.551) TCGA-G2-A2EO-01 20 33764071 33764071 G A PROCR Silent p.V141V 0.25 TCGA-G2-A2EO-01 20 33891806 33891806 G A UQCC1 Silent p.L278L 0.31 TCGA-G2-A2EO-01 20 34214245 34214245 G A CPNE1 Missense_Mutation p.S516L 0.24 deleterious(0.03) benign(0.026) TCGA-G2-A2EO-01 20 34776319 34776319 C T EPB41L1 Silent p.L308L 0.21 TCGA-G2-A2EO-01 20 36431360 36431360 G C CTNNBL1 Missense_Mutation p.D375H 0.23 deleterious(0) probably_damaging(0.943) TCGA-G2-A2EO-01 20 37662928 37662928 G C DHX35 Missense_Mutation p.E679Q 0.30 deleterious(0.04) possibly_damaging(0.513) TCGA-G2-A2EO-01 20 37662949 37662949 C G DHX35 Missense_Mutation p.Q686E 0.25 tolerated(0.56) benign(0.004) TCGA-G2-A2EO-01 20 39832342 39832342 G A ZHX3 Silent p.L405L 0.19 TCGA-G2-A2EO-01 20 42194853 42194853 G C SGK2 5'UTR 0.26 TCGA-G2-A2EO-01 20 42825868 42825868 C G OSER1 Missense_Mutation p.E235Q 0.14 tolerated(0.19) benign(0.243) TCGA-G2-A2EO-01 20 44642135 44642135 C A MMP9 Silent p.I524I 0.41 TCGA-G2-A2EO-01 20 44746965 44746965 G A CD40 5'UTR 0.20 TCGA-G2-A2EO-01 20 45850058 45850058 C A ZMYND8 Silent p.G1062G 0.37 TCGA-G2-A2EO-01 20 4781678 4781678 C T RASSF2 5'UTR 0.19 TCGA-G2-A2EO-01 20 50140246 50140246 G T NFATC2 Missense_Mutation p.F178L 0.24 deleterious(0.01) possibly_damaging(0.74) TCGA-G2-A2EO-01 20 56728648 56728648 G C C20orf85 Missense_Mutation p.Q39H 0.23 tolerated(0.47) benign(0.006) TCGA-G2-A2EO-01 20 57268911 57268911 C T NPEPL1 Missense_Mutation p.S90L 0.17 deleterious(0) benign(0.091) TCGA-G2-A2EO-01 20 61525762 61525762 C T DIDO1 Intron 0.13 TCGA-G2-A2EO-01 20 61526493 61526493 C G DIDO1 Missense_Mutation p.E747Q 0.25 probably_damaging(0.999) TCGA-G2-A2EO-01 20 62198551 62198551 G C HELZ2 Silent p.L720L 0.19 TCGA-G2-A2EO-01 20 62198716 62198716 G C HELZ2 Silent p.L665L 0.30 TCGA-G2-A2EO-01 20 62198913 62198913 G C HELZ2 Missense_Mutation p.P600A 0.31 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 20 62331869 62331869 C T ARFRP1 Missense_Mutation p.E178K 0.24 deleterious(0.02) possibly_damaging(0.804) TCGA-G2-A2EO-01 20 854974 854974 G C ANGPT4 Nonsense_Mutation p.S435* 0.22 TCGA-G2-A2EO-01 21 22658708 22658708 G A NCAM2 Missense_Mutation p.E153K 0.13 tolerated(0.46) benign(0.002) TCGA-G2-A2EO-01 21 27945285 27945285 G T CYYR1 5'UTR 0.13 TCGA-G2-A2EO-01 21 30927614 30927614 T C GRIK1 Missense_Mutation p.Y789C 0.15 deleterious(0) possibly_damaging(0.845) TCGA-G2-A2EO-01 21 33104009 33104009 C T SCAF4 5'UTR 0.18 TCGA-G2-A2EO-01 21 33956596 33956596 C G TCP10L Missense_Mutation p.E7Q 0.27 tolerated(0.06) benign(0.437) TCGA-G2-A2EO-01 21 35183344 35183344 G A ITSN1 Nonsense_Mutation p.W795* 0.11 TCGA-G2-A2EO-01 21 37833718 37833718 G A CLDN14 Silent p.G92G 0.43 TCGA-G2-A2EO-01 21 43171292 43171292 C G RIPK4 Missense_Mutation p.K196N 0.08 tolerated(0.1) benign(0.038) TCGA-G2-A2EO-01 21 45838307 45838307 G C TRPM2 Missense_Mutation p.K1110N 0.10 deleterious(0.04) probably_damaging(0.992) TCGA-G2-A2EO-01 22 17624010 17624010 C T CECR5 Silent p.R183R 0.22 TCGA-G2-A2EO-01 22 19495340 19495340 G C CDC45 Missense_Mutation p.L368F 0.33 tolerated(0.13) benign(0.306) TCGA-G2-A2EO-01 22 20229926 20229926 C T RTN4R Missense_Mutation p.E244K 0.37 deleterious(0) possibly_damaging(0.625) TCGA-G2-A2EO-01 22 21138315 21138315 G A SERPIND1 Silent p.L315L 0.32 TCGA-G2-A2EO-01 22 22673515 22673515 C G IGLV5-52 Missense_Mutation p.S103C 0.25 deleterious(0) probably_damaging(0.985) TCGA-G2-A2EO-01 22 22730768 22730768 C G IGLV5-45 Missense_Mutation p.S88C 0.20 deleterious(0) possibly_damaging(0.686) TCGA-G2-A2EO-01 22 22764341 22764341 C T IGLV1-40 Missense_Mutation p.S28L 0.23 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-G2-A2EO-01 22 30079120 30079120 G A NF2 Intron 0.11 TCGA-G2-A2EO-01 22 30394779 30394779 G C MTMR3 Missense_Mutation p.E164Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 22 30824562 30824562 C T RP4-539M6.19 3'UTR 0.17 TCGA-G2-A2EO-01 22 31011378 31011378 G C TCN2 Missense_Mutation p.R224T 0.29 tolerated(0.44) benign(0.02) TCGA-G2-A2EO-01 22 32188758 32188758 C G DEPDC5 Nonsense_Mutation p.S241* 0.27 TCGA-G2-A2EO-01 22 32627028 32627028 C G SLC5A4 Silent p.V352V 0.25 TCGA-G2-A2EO-01 22 36545127 36545127 G C APOL3 Intron 0.11 TCGA-G2-A2EO-01 22 36745254 36745254 G C MYH9 Missense_Mutation p.L10V 0.23 probably_damaging(0.994) TCGA-G2-A2EO-01 22 37902202 37902202 G C CARD10 Silent p.L460L 0.34 TCGA-G2-A2EO-01 22 38437091 38437091 G C RP5-1039K5.18 5'Flank 0.22 TCGA-G2-A2EO-01 22 39378461 39378461 G C APOBEC3B Translation_Start_Site p.M1? 0.59 deleterious(0.01) benign(0.38) TCGA-G2-A2EO-01 22 39483104 39483104 G T APOBEC3G Silent p.L371L 0.28 TCGA-G2-A2EO-01 22 40661277 40661277 C G TNRC6B Nonsense_Mutation p.S348* 0.28 TCGA-G2-A2EO-01 22 42557230 42557230 G C TCF20 3'UTR 0.40 TCGA-G2-A2EO-01 22 46643087 46643087 G A CDPF1 Missense_Mutation p.P49S 0.14 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 22 46759985 46759985 C T CELSR1 Silent p.K2981K 0.29 TCGA-G2-A2EO-01 22 46859643 46859643 C T CELSR1 Missense_Mutation p.E1382K 0.23 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EO-01 22 50523236 50523236 C T MLC1 Silent p.A32A 0.28 TCGA-G2-A2EO-01 22 50657502 50657502 C G TUBGCP6 Missense_Mutation p.E1541Q 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-G2-A2EO-01 2 10187909 10187909 C G KLF11 Missense_Mutation p.L149V 0.30 tolerated(0.31) benign(0.397) TCGA-G2-A2EO-01 2 10269373 10269373 G C RRM2 Missense_Mutation p.E404Q 0.13 tolerated_low_confidence(0.08) possibly_damaging(0.6) TCGA-G2-A2EO-01 2 105859262 105859262 A C GPR45 Missense_Mutation p.K316T 0.12 deleterious(0) possibly_damaging(0.593) TCGA-G2-A2EO-01 2 106498397 106498397 C T NCK2 Silent p.F280F 0.15 TCGA-G2-A2EO-01 2 114220043 114220043 G A CBWD2 Missense_Mutation p.D212N 0.30 deleterious(0.01) benign(0.052) TCGA-G2-A2EO-01 2 11756766 11756766 C G GREB1 Missense_Mutation p.S1111W 0.13 deleterious(0) possibly_damaging(0.792) TCGA-G2-A2EO-01 2 120003084 120003084 G C STEAP3 Missense_Mutation p.E14D 0.08 tolerated(0.52) benign(0.002) TCGA-G2-A2EO-01 2 1263181 1263181 C G SNTG2 Missense_Mutation p.H349D 0.32 tolerated(0.13) benign(0.013) TCGA-G2-A2EO-01 2 128388376 128388376 G C MYO7B Missense_Mutation p.E1584D 0.09 tolerated(1) possibly_damaging(0.676) TCGA-G2-A2EO-01 2 128753985 128753985 G T SAP130 Missense_Mutation p.P458T 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-G2-A2EO-01 2 136626327 136626327 G A MCM6 Silent p.L157L 0.29 TCGA-G2-A2EO-01 2 136872950 136872950 C T CXCR4 Missense_Mutation p.R187K 0.13 tolerated(0.42) benign(0.002) TCGA-G2-A2EO-01 2 137852590 137852590 G A THSD7B Silent p.R366R 0.13 TCGA-G2-A2EO-01 2 141762977 141762977 C G LRP1B Missense_Mutation p.L810F 0.11 possibly_damaging(0.587) TCGA-G2-A2EO-01 2 144194515 144194515 G C ARHGAP15 Missense_Mutation p.E203Q 0.23 tolerated(0.51) benign(0.03) TCGA-G2-A2EO-01 2 144194548 144194548 G A ARHGAP15 Missense_Mutation p.E214K 0.12 deleterious(0.01) possibly_damaging(0.505) TCGA-G2-A2EO-01 2 153006744 153006744 C T STAM2 Splice_Site p.X14_splice 0.12 TCGA-G2-A2EO-01 2 160182266 160182266 C A BAZ2B Missense_Mutation p.R2036I 0.31 probably_damaging(0.961) TCGA-G2-A2EO-01 2 16082244 16082244 G C MYCN Missense_Mutation p.E20Q 0.11 deleterious(0) possibly_damaging(0.656) TCGA-G2-A2EO-01 2 165349549 165349549 G C GRB14 Silent p.L540L 0.26 TCGA-G2-A2EO-01 2 166198839 166198839 C T SCN2A Missense_Mutation p.L808F 0.33 tolerated(0.39) benign(0.045) TCGA-G2-A2EO-01 2 166231393 166231393 G C SCN2A Missense_Mutation p.E1391Q 0.38 tolerated(0.35) benign(0.003) TCGA-G2-A2EO-01 2 166898905 166898905 C G SCN1A Missense_Mutation p.K691N 0.39 tolerated(0.09) possibly_damaging(0.747) TCGA-G2-A2EO-01 2 173355768 173355768 G A ITGA6 Missense_Mutation p.R899K 0.16 deleterious(0.01) possibly_damaging(0.814) TCGA-G2-A2EO-01 2 175213338 175213338 C T CIR1 Missense_Mutation p.E414K 0.14 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-G2-A2EO-01 2 175436406 175436406 G C WIPF1 Nonsense_Mutation p.S376* 0.13 TCGA-G2-A2EO-01 2 178417039 178417039 C G TTC30B Missense_Mutation p.E151D 0.13 tolerated(0.41) benign(0.001) TCGA-G2-A2EO-01 2 179455083 179455083 C T TTN Missense_Mutation p.E20457K 0.11 TCGA-G2-A2EO-01 2 179611886 179611886 G C TTN Intron 0.29 TCGA-G2-A2EO-01 2 190742151 190742151 G A PMS1 Missense_Mutation p.E930K 0.11 tolerated(0.13) benign(0.002) TCGA-G2-A2EO-01 2 196718190 196718190 C T DNAH7 Silent p.E2886E 0.12 TCGA-G2-A2EO-01 2 197010766 197010766 C T STK17B Missense_Mutation p.E117K 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-G2-A2EO-01 2 197674136 197674136 G C C2orf66 5'UTR 0.30 TCGA-G2-A2EO-01 2 200213701 200213701 G C SATB2 Missense_Mutation p.S299C 0.15 deleterious(0) benign(0.394) TCGA-G2-A2EO-01 2 200803731 200803731 G C TYW5 Missense_Mutation p.F137L 0.12 tolerated(0.34) benign(0.012) TCGA-G2-A2EO-01 2 203839184 203839184 G A CARF Missense_Mutation p.D487N 0.28 deleterious(0.02) possibly_damaging(0.763) TCGA-G2-A2EO-01 2 203842024 203842024 C G CARF Silent p.L509L 0.17 TCGA-G2-A2EO-01 2 207530676 207530676 C A DYTN Missense_Mutation p.R353L 0.18 deleterious(0) possibly_damaging(0.866) TCGA-G2-A2EO-01 2 207615685 207615685 C T MDH1B Missense_Mutation p.R342H 0.19 tolerated(0.17) benign(0.168) TCGA-G2-A2EO-01 2 207630004 207630004 G C MDH1B 5'UTR 0.25 TCGA-G2-A2EO-01 2 213872434 213872434 C G IKZF2 Missense_Mutation p.E411Q 0.33 deleterious(0) possibly_damaging(0.464) TCGA-G2-A2EO-01 2 216213870 216213870 C T ATIC Silent p.L519L 0.29 TCGA-G2-A2EO-01 2 216273063 216273063 C A FN1 Missense_Mutation p.D796Y 0.24 tolerated(0.06) probably_damaging(0.917) TCGA-G2-A2EO-01 2 219532976 219532976 G A RNF25 Nonsense_Mutation p.Q69* 0.29 TCGA-G2-A2EO-01 2 219603658 219603658 G A TTLL4 Missense_Mutation p.S420N 0.22 tolerated(0.09) possibly_damaging(0.892) TCGA-G2-A2EO-01 2 219738481 219738481 G C WNT6 Missense_Mutation p.E338Q 0.18 tolerated(0.21) possibly_damaging(0.683) TCGA-G2-A2EO-01 2 219920403 219920403 C T IHH Silent p.L254L 0.43 TCGA-G2-A2EO-01 2 220435169 220435170 - TGCT OBSL1 Frame_Shift_Ins p.H262Qfs*94 0.19 TCGA-G2-A2EO-01 2 223065952 223065952 G C PAX3 Missense_Mutation p.Q487E 0.19 deleterious_low_confidence(0.03) benign(0) TCGA-G2-A2EO-01 2 225642870 225642870 G C DOCK10 Missense_Mutation p.I1929M 0.19 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EO-01 2 228174028 228174028 C T COL4A3 Silent p.F1583F 0.18 TCGA-G2-A2EO-01 2 228883230 228883230 C T SPHKAP Silent p.T780T 0.27 TCGA-G2-A2EO-01 2 231265994 231265994 G T SP140L Intron 0.18 TCGA-G2-A2EO-01 2 231775629 231775629 C T GPR55 Missense_Mutation p.E17K 0.17 tolerated(0.67) benign(0.002) TCGA-G2-A2EO-01 2 234343105 234343105 C T DGKD Missense_Mutation p.T143I 0.14 deleterious(0.02) benign(0.158) TCGA-G2-A2EO-01 2 241404929 241404929 G C GPC1 Missense_Mutation p.Q436H 0.08 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 2 242285646 242285646 G C SEPT2 Missense_Mutation p.R303T 0.30 tolerated(0.28) possibly_damaging(0.771) TCGA-G2-A2EO-01 2 242794494 242794494 C T PDCD1 Missense_Mutation p.E150K 0.37 tolerated(0.22) benign(0.013) TCGA-G2-A2EO-01 2 26414459 26414459 C G HADHA Missense_Mutation p.R680T 0.38 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 2 26501592 26501592 G C HADHB Missense_Mutation p.D185H 0.12 tolerated(0.16) benign(0.409) TCGA-G2-A2EO-01 2 29016810 29016810 G C PPP1CB Missense_Mutation p.D276H 0.31 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-G2-A2EO-01 2 29519819 29519819 G A ALK Silent p.V584V 0.23 TCGA-G2-A2EO-01 2 32678919 32678919 C T BIRC6 Silent p.F1554F 0.35 TCGA-G2-A2EO-01 2 3660949 3660949 G C COLEC11 Missense_Mutation p.R74T 0.17 tolerated(0.06) benign(0.419) TCGA-G2-A2EO-01 2 37374019 37374019 C G EIF2AK2 Missense_Mutation p.E73Q 0.27 deleterious(0.03) possibly_damaging(0.775) TCGA-G2-A2EO-01 2 37444124 37444124 C T CEBPZ Intron 0.09 TCGA-G2-A2EO-01 2 39249913 39249913 C G SOS1 Missense_Mutation p.R552S 0.26 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 2 39250197 39250197 C T SOS1 Missense_Mutation p.E458K 0.32 deleterious(0) probably_damaging(0.976) TCGA-G2-A2EO-01 2 39477777 39477777 A G MAP4K3 Silent p.G889G 0.16 TCGA-G2-A2EO-01 2 39505625 39505625 G A MAP4K3 Nonsense_Mutation p.Q573* 0.13 TCGA-G2-A2EO-01 2 43937240 43937240 C T PLEKHH2 Missense_Mutation p.S693L 0.10 tolerated(0.07) benign(0.008) TCGA-G2-A2EO-01 2 43992600 43992600 C T PLEKHH2 Nonsense_Mutation p.Q1449* 0.34 TCGA-G2-A2EO-01 2 45169727 45169727 C T SIX3 Missense_Mutation p.H162Y 0.21 deleterious(0.02) benign(0.077) TCGA-G2-A2EO-01 2 54080974 54080974 G A GPR75 Missense_Mutation p.S307L 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-G2-A2EO-01 2 62063223 62063223 C A FAM161A Missense_Mutation p.M591I 0.26 deleterious(0.01) possibly_damaging(0.58) TCGA-G2-A2EO-01 2 65357024 65357024 C T RAB1A Intron 0.64 TCGA-G2-A2EO-01 2 675513 675513 G T TMEM18 Missense_Mutation p.L59I 0.08 deleterious(0.05) possibly_damaging(0.495) TCGA-G2-A2EO-01 2 73339501 73339501 G A RAB11FIP5 Silent p.F135F 0.41 TCGA-G2-A2EO-01 2 73339600 73339600 G A RAB11FIP5 Silent p.S102S 0.30 TCGA-G2-A2EO-01 2 74372361 74372361 C G BOLA3 Missense_Mutation p.E42Q 0.11 tolerated(0.18) benign(0.111) TCGA-G2-A2EO-01 2 74598163 74598163 C G DCTN1 Missense_Mutation p.K262N 0.13 deleterious(0) probably_damaging(0.91) TCGA-G2-A2EO-01 2 74762786 74762786 C T LOXL3 Missense_Mutation p.D449N 0.17 tolerated(0.98) benign(0.002) TCGA-G2-A2EO-01 2 75915007 75915007 C G GCFC2 Missense_Mutation p.D546H 0.12 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 2 85262250 85262250 C G KCMF1 Missense_Mutation p.S99C 0.41 tolerated(0.06) benign(0.125) TCGA-G2-A2EO-01 2 85820206 85820206 C T VAMP5 Missense_Mutation p.L93F 0.18 tolerated(0.07) possibly_damaging(0.758) TCGA-G2-A2EO-01 2 97529515 97529515 G C SEMA4C Silent p.L449L 0.07 TCGA-G2-A2EO-01 2 98377308 98377308 C G TMEM131 Missense_Mutation p.K1653N 0.18 deleterious_low_confidence(0) benign(0.05) TCGA-G2-A2EO-01 3 100277340 100277340 C T TMEM45A Silent p.L165L 0.15 TCGA-G2-A2EO-01 3 100413798 100413798 G A GPR128 Missense_Mutation p.E783K 0.18 tolerated(0.1) benign(0.059) TCGA-G2-A2EO-01 3 100961751 100961751 G A IMPG2 Silent p.L935L 0.27 TCGA-G2-A2EO-01 3 10146088 10146088 G A FANCD2OS Missense_Mutation p.S124L 0.12 tolerated(0.06) probably_damaging(0.978) TCGA-G2-A2EO-01 3 10362780 10362780 C T SEC13 5'UTR 0.31 TCGA-G2-A2EO-01 3 111667878 111667878 G A PHLDB2 Missense_Mutation p.E863K 0.28 tolerated(0.6) benign(0.002) TCGA-G2-A2EO-01 3 111851948 111851948 C G GCSAM Missense_Mutation p.R7T 0.15 deleterious(0) benign(0.082) TCGA-G2-A2EO-01 3 112185019 112185019 G C BTLA Nonsense_Mutation p.S269* 0.28 TCGA-G2-A2EO-01 3 113378767 113378767 G C KIAA2018 Missense_Mutation p.Q588E 0.16 possibly_damaging(0.48) TCGA-G2-A2EO-01 3 120461334 120461334 C T RABL3 Silent p.V7V 0.10 TCGA-G2-A2EO-01 3 121630438 121630438 C G SLC15A2 Missense_Mutation p.S118C 0.43 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EO-01 3 12458253 12458253 C G PPARG Missense_Mutation p.I290M 0.38 deleterious(0.03) possibly_damaging(0.709) TCGA-G2-A2EO-01 3 125648543 125648543 G C ALG1L Intron 0.33 TCGA-G2-A2EO-01 3 125735707 125735707 G C SLC41A3 Missense_Mutation p.L253V 0.06 tolerated(0.39) possibly_damaging(0.881) TCGA-G2-A2EO-01 3 126193905 126193905 G C ZXDC Missense_Mutation p.F268L 0.18 deleterious(0.03) benign(0.198) TCGA-G2-A2EO-01 3 129214429 129214429 C A IFT122 Silent p.L780L 0.30 TCGA-G2-A2EO-01 3 129231193 129231193 C G IFT122 Missense_Mutation p.F1026L 0.18 tolerated(0.1) possibly_damaging(0.523) TCGA-G2-A2EO-01 3 129290635 129290635 G C PLXND1 Missense_Mutation p.P1044A 0.16 tolerated(0.79) benign(0.001) TCGA-G2-A2EO-01 3 135913868 135913868 C T MSL2 Missense_Mutation p.E30K 0.38 deleterious(0.01) probably_damaging(0.951) TCGA-G2-A2EO-01 3 139063001 139063001 G C MRPS22 Missense_Mutation p.E45Q 0.20 tolerated_low_confidence(0.54) benign(0.38) TCGA-G2-A2EO-01 3 139092111 139092111 C T COPB2 Silent p.K346K 0.07 TCGA-G2-A2EO-01 3 140785627 140785627 C G SPSB4 Missense_Mutation p.I227M 0.31 tolerated(0.07) possibly_damaging(0.527) TCGA-G2-A2EO-01 3 142168301 142168301 C G ATR Missense_Mutation p.Q2635H 0.14 deleterious(0) probably_damaging(0.99) TCGA-G2-A2EO-01 3 150264652 150264652 C T SERP1 5'UTR 0.39 TCGA-G2-A2EO-01 3 151046539 151046539 G C P2RY13 Missense_Mutation p.S102C 0.36 deleterious(0) probably_damaging(0.976) TCGA-G2-A2EO-01 3 151154669 151154669 G A IGSF10 Silent p.I2560I 0.19 TCGA-G2-A2EO-01 3 154834674 154834674 G A MME Missense_Mutation p.E185K 0.24 deleterious(0) probably_damaging(0.982) TCGA-G2-A2EO-01 3 155633963 155633963 C T GMPS Silent p.I398I 0.31 TCGA-G2-A2EO-01 3 15762601 15762601 G C ANKRD28 Missense_Mutation p.L243V 0.11 deleterious(0) probably_damaging(0.95) TCGA-G2-A2EO-01 3 16269085 16269085 C T GALNT15 3'UTR 0.16 TCGA-G2-A2EO-01 3 164735823 164735823 T C SI Missense_Mutation p.Y1152C 0.10 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EO-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-G2-A2EO-01 3 182763328 182763328 C T MCCC1 Missense_Mutation p.G319E 0.18 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 3 182923668 182923668 G C MCF2L2 Missense_Mutation p.I960M 0.32 tolerated(0.32) benign(0.043) TCGA-G2-A2EO-01 3 183225916 183225916 G A KLHL6 Silent p.L280L 0.29 TCGA-G2-A2EO-01 3 183967544 183967544 G T ECE2 Missense_Mutation p.R21L 0.11 tolerated_low_confidence(0.07) benign(0.02) TCGA-G2-A2EO-01 3 184870595 184870595 G C C3orf70 Missense_Mutation p.S6W 0.15 deleterious_low_confidence(0) benign(0.093) TCGA-G2-A2EO-01 3 185879433 185879433 T C DGKG Missense_Mutation p.M746V 0.10 deleterious(0.02) benign(0.3) TCGA-G2-A2EO-01 3 186504529 186504531 ATG - EIF4A2 Intron 0.34 TCGA-G2-A2EO-01 3 189349278 189349278 C T TP63 5'UTR 0.26 TCGA-G2-A2EO-01 3 195102746 195102746 C A ACAP2 Silent p.V39V 0.38 TCGA-G2-A2EO-01 3 197652962 197652962 C T IQCG Missense_Mutation p.R220K 0.35 tolerated(0.54) benign(0.078) TCGA-G2-A2EO-01 3 197652965 197652965 C T IQCG Missense_Mutation p.G219E 0.34 deleterious(0) probably_damaging(0.917) TCGA-G2-A2EO-01 3 36899292 36899292 G A TRANK1 Silent p.L597L 0.13 TCGA-G2-A2EO-01 3 37151043 37151043 G A LRRFIP2 Missense_Mutation p.S195F 0.39 deleterious(0.02) benign(0.187) TCGA-G2-A2EO-01 3 38739903 38739903 G T SCN10A Missense_Mutation p.S1603Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EO-01 3 38743465 38743465 G C SCN10A Missense_Mutation p.L1508V 0.12 deleterious(0.01) possibly_damaging(0.877) TCGA-G2-A2EO-01 3 38962667 38962667 G A SCN11A Silent p.L264L 0.12 TCGA-G2-A2EO-01 3 40457535 40457535 G C ENTPD3 Missense_Mutation p.E268Q 0.31 tolerated(0.14) possibly_damaging(0.461) TCGA-G2-A2EO-01 3 47619161 47619161 C T CSPG5 Missense_Mutation p.D119N 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-G2-A2EO-01 3 48612779 48612779 C T COL7A1 Missense_Mutation p.G2058E 0.46 unknown(0) TCGA-G2-A2EO-01 3 48697852 48697852 G A CELSR3 Missense_Mutation p.S739L 0.41 deleterious(0) probably_damaging(0.934) TCGA-G2-A2EO-01 3 48698805 48698805 C G CELSR3 Silent p.V421V 0.39 TCGA-G2-A2EO-01 3 48820513 48820513 G T PRKAR2A Missense_Mutation p.Q150K 0.12 tolerated(0.1) benign(0.029) TCGA-G2-A2EO-01 3 49049462 49049462 G A WDR6 Silent p.L195L 0.09 TCGA-G2-A2EO-01 3 50211515 50211515 G A SEMA3F Missense_Mutation p.E102K 0.47 deleterious(0.04) benign(0.028) TCGA-G2-A2EO-01 3 50357236 50357236 C T HYAL2 Missense_Mutation p.D229N 0.35 tolerated(0.16) probably_damaging(0.983) TCGA-G2-A2EO-01 3 5246762 5246762 G C EDEM1 Silent p.V351V 0.42 TCGA-G2-A2EO-01 3 52558487 52558487 C T NT5DC2 Silent p.%3D 0.48 TCGA-G2-A2EO-01 3 52643561 52643561 G C PBRM1 Missense_Mutation p.Q779E 0.46 deleterious(0.01) benign(0.17) TCGA-G2-A2EO-01 3 52696218 52696218 C T PBRM1 Silent p.Q153Q 0.12 TCGA-G2-A2EO-01 3 53783406 53783406 C T CACNA1D Silent p.F1162F 0.42 TCGA-G2-A2EO-01 3 55733504 55733504 C T ERC2 Missense_Mutation p.D917N 0.38 tolerated(0.08) possibly_damaging(0.479) TCGA-G2-A2EO-01 3 65342307 65342307 C T MAGI1 Missense_Mutation p.E1379K 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-G2-A2EO-01 3 66434683 66434683 G A LRIG1 Silent p.F601F 0.17 TCGA-G2-A2EO-01 3 66502041 66502041 C T LRIG1 Missense_Mutation p.E103K 0.42 tolerated(0.16) benign(0.223) TCGA-G2-A2EO-01 3 73016856 73016856 G A GXYLT2 Missense_Mutation p.E379K 0.18 tolerated(0.05) possibly_damaging(0.725) TCGA-G2-A2EO-01 3 88104904 88104904 C T CGGBP1 Missense_Mutation p.E75K 0.11 tolerated(0.33) benign(0.274) TCGA-G2-A2EO-01 4 100503108 100503108 C G MTTP Silent p.L36L 0.16 TCGA-G2-A2EO-01 4 104079969 104079969 C T CENPE Silent p.L892L 0.30 TCGA-G2-A2EO-01 4 10566338 10566338 G A CLNK Missense_Mutation p.S119F 0.49 deleterious(0.03) benign(0.002) TCGA-G2-A2EO-01 4 123270446 123270446 G T KIAA1109 Missense_Mutation p.D4472Y 0.38 probably_damaging(0.998) TCGA-G2-A2EO-01 4 129193566 129193566 C G PGRMC2 Missense_Mutation p.L199F 0.13 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 4 129193594 129193594 C G PGRMC2 Missense_Mutation p.R190T 0.12 tolerated(0.61) possibly_damaging(0.857) TCGA-G2-A2EO-01 4 140641044 140641044 C G MAML3 Missense_Mutation p.Q950H 0.30 probably_damaging(0.947) TCGA-G2-A2EO-01 4 141555214 141555214 G C TBC1D9 Silent p.L878L 0.17 TCGA-G2-A2EO-01 4 151511949 151511949 G C LRBA Missense_Mutation p.Q2048E 0.46 tolerated(0.15) possibly_damaging(0.726) TCGA-G2-A2EO-01 4 156632044 156632044 G C GUCY1A3 Missense_Mutation p.D243H 0.24 deleterious(0.03) benign(0.008) TCGA-G2-A2EO-01 4 160244633 160244633 T G RAPGEF2 Missense_Mutation p.L177R 0.32 deleterious(0) probably_damaging(0.993) TCGA-G2-A2EO-01 4 166254535 166254535 G A MSMO1 Missense_Mutation p.E5K 0.29 tolerated(0.6) benign(0.001) TCGA-G2-A2EO-01 4 166258996 166258996 A T MSMO1 Missense_Mutation p.N104I 0.30 deleterious(0) probably_damaging(0.985) TCGA-G2-A2EO-01 4 1806119 1806119 G A FGFR3 Missense_Mutation p.G382R 0.52 tolerated(0.14) probably_damaging(0.925) TCGA-G2-A2EO-01 4 186244769 186244769 G C SNX25 Missense_Mutation p.E358Q 0.38 tolerated(0.11) possibly_damaging(0.799) TCGA-G2-A2EO-01 4 186392204 186392204 C T CCDC110 Splice_Site p.X4_splice 0.37 TCGA-G2-A2EO-01 4 187173013 187173013 C G KLKB1 Missense_Mutation p.S381C 0.15 tolerated(0.06) probably_damaging(0.922) TCGA-G2-A2EO-01 4 187521209 187521209 C G FAT1 Missense_Mutation p.L3982F 0.34 benign(0.077) TCGA-G2-A2EO-01 4 187531098 187531098 C T FAT1 Missense_Mutation p.D3309N 0.19 probably_damaging(0.996) TCGA-G2-A2EO-01 4 37839181 37839181 C T PGM2 Silent p.I129I 0.27 TCGA-G2-A2EO-01 4 38907430 38907430 C T FAM114A1 Missense_Mutation p.S202L 0.11 tolerated(0.36) benign(0.371) TCGA-G2-A2EO-01 4 52894145 52894145 C G SGCB Missense_Mutation p.E248Q 0.16 tolerated(0.29) benign(0.366) TCGA-G2-A2EO-01 4 53372 53372 G C ZNF595 5'UTR 0.05 TCGA-G2-A2EO-01 4 53728669 53728669 G C RASL11B 5'UTR 0.14 TCGA-G2-A2EO-01 4 56236183 56236183 C T SRD5A3 Silent p.L294L 0.23 TCGA-G2-A2EO-01 4 62542622 62542622 C T LPHN3 Silent p.Y116Y 0.04 TCGA-G2-A2EO-01 4 71232530 71232530 G A SMR3A Missense_Mutation p.R75K 0.13 deleterious_low_confidence(0) unknown(0) TCGA-G2-A2EO-01 4 77357273 77357273 G A SHROOM3 Missense_Mutation p.G23E 0.27 tolerated(0.44) benign(0.007) TCGA-G2-A2EO-01 4 77651964 77651964 G A SHROOM3 Missense_Mutation p.E155K 0.36 deleterious(0.01) benign(0.439) TCGA-G2-A2EO-01 4 88401595 88401595 C G SPARCL1 Missense_Mutation p.K582N 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-G2-A2EO-01 4 88996667 88996667 C A PKD2 Missense_Mutation p.R910S 0.11 deleterious(0) probably_damaging(0.927) TCGA-G2-A2EO-01 4 89709016 89709016 G T FAM13A Missense_Mutation p.Q387K 0.12 deleterious(0.01) probably_damaging(0.953) TCGA-G2-A2EO-01 4 90034378 90034378 G C TIGD2 Missense_Mutation p.E85Q 0.20 tolerated(0.17) probably_damaging(0.994) TCGA-G2-A2EO-01 5 107521822 107521822 C T FBXL17 Missense_Mutation p.D581N 0.11 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EO-01 5 111754811 111754811 G A EPB41L4A 5'UTR 0.33 TCGA-G2-A2EO-01 5 123983433 123983433 C T ZNF608 Missense_Mutation p.E882K 0.13 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EO-01 5 127514329 127514330 - A SLC12A2 Frame_Shift_Ins p.Q1019Tfs*7 0.10 TCGA-G2-A2EO-01 5 131796262 131796262 C G C5orf56 Missense_Mutation p.Q33E 0.11 tolerated_low_confidence(0.86) benign(0.092) TCGA-G2-A2EO-01 5 132227738 132227738 G C AFF4 Intron 0.12 TCGA-G2-A2EO-01 5 133502935 133502935 C T SKP1 Splice_Site p.X33_splice 0.13 TCGA-G2-A2EO-01 5 137902369 137902369 C G HSPA9 Missense_Mutation p.Q306H 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G2-A2EO-01 5 13862845 13862845 G A DNAH5 Silent p.I1536I 0.21 TCGA-G2-A2EO-01 5 139918941 139918941 C T ANKHD1 Intron 0.34 TCGA-G2-A2EO-01 5 139947635 139947635 C T SLC35A4 Missense_Mutation p.S294L 0.27 deleterious(0) possibly_damaging(0.849) TCGA-G2-A2EO-01 5 140202747 140202747 G A PCDHA5 Missense_Mutation p.V463M 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-G2-A2EO-01 5 140209836 140209836 G A PCDHA6 Silent p.A720A 0.13 TCGA-G2-A2EO-01 5 140222611 140222611 C G PCDHA8 Missense_Mutation p.R569G 0.32 tolerated_low_confidence(1) benign(0.003) TCGA-G2-A2EO-01 5 140228060 140228060 G C PCDHA9 5'UTR 0.22 TCGA-G2-A2EO-01 5 140228108 140228108 G C PCDHA9 Missense_Mutation p.E10Q 0.29 tolerated_low_confidence(0.11) benign(0.046) TCGA-G2-A2EO-01 5 140236081 140236081 C G PCDHA10 Missense_Mutation p.R150G 0.34 deleterious_low_confidence(0) benign(0.111) TCGA-G2-A2EO-01 5 140530815 140530815 C T PCDHB6 Missense_Mutation p.S326L 0.26 deleterious(0.01) benign(0.061) TCGA-G2-A2EO-01 5 140554506 140554506 C T PCDHB7 Missense_Mutation p.S697L 0.08 deleterious_low_confidence(0) benign(0.055) TCGA-G2-A2EO-01 5 140580555 140580555 T A PCDHB11 Nonsense_Mutation p.L403* 0.16 TCGA-G2-A2EO-01 5 140596055 140596055 C G PCDHB13 Missense_Mutation p.S787C 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.637) TCGA-G2-A2EO-01 5 140616515 140616515 C G PCDHB18 RNA 0.16 TCGA-G2-A2EO-01 5 140724723 140724723 G C PCDHGA3 Missense_Mutation p.D375H 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-G2-A2EO-01 5 140750497 140750497 C G PCDHGB3 Missense_Mutation p.S179C 0.35 deleterious(0) probably_damaging(0.997) TCGA-G2-A2EO-01 5 140769071 140769071 C G PCDHGB4 Silent p.L540L 0.12 TCGA-G2-A2EO-01 5 140788139 140788139 G A PCDHGB6 Missense_Mutation p.E124K 0.34 tolerated(0.2) benign(0.049) TCGA-G2-A2EO-01 5 141041670 141041670 G A ARAP3 Missense_Mutation p.R985C 0.18 deleterious(0.02) probably_damaging(1) TCGA-G2-A2EO-01 5 1414876 1414876 G C SLC6A3 Missense_Mutation p.F362L 0.18 deleterious(0.02) possibly_damaging(0.85) TCGA-G2-A2EO-01 5 145252372 145252372 G A GRXCR2 Silent p.L54L 0.28 TCGA-G2-A2EO-01 5 149006694 149006694 C G ARHGEF37 Missense_Mutation p.P507R 0.14 deleterious(0) possibly_damaging(0.695) TCGA-G2-A2EO-01 5 149748414 149748414 G A TCOF1 Missense_Mutation p.E172K 0.27 deleterious(0.01) benign(0.111) TCGA-G2-A2EO-01 5 154173531 154173531 G T LARP1 Missense_Mutation p.G270V 0.07 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 5 156353320 156353320 G C TIMD4 Missense_Mutation p.S283C 0.22 deleterious(0.04) possibly_damaging(0.788) TCGA-G2-A2EO-01 5 161116300 161116300 T G GABRA6 Missense_Mutation p.F163V 0.20 deleterious(0) probably_damaging(0.996) TCGA-G2-A2EO-01 5 168119694 168119694 C T SLIT3 Missense_Mutation p.D1032N 0.28 deleterious(0.03) possibly_damaging(0.691) TCGA-G2-A2EO-01 5 174135 174135 G C PLEKHG4B Missense_Mutation p.A1086P 0.42 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 5 174155 174155 G C PLEKHG4B Missense_Mutation p.K1092N 0.43 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 5 176637917 176637917 G A NSD1 Silent p.L839L 0.23 TCGA-G2-A2EO-01 5 177690292 177690292 G C COL23A1 Missense_Mutation p.P186A 0.37 deleterious(0.01) unknown(0) TCGA-G2-A2EO-01 5 179390562 179390562 C T RNF130 Missense_Mutation p.E385K 0.43 tolerated_low_confidence(0.19) benign(0.057) TCGA-G2-A2EO-01 5 179745840 179745840 G C GFPT2 Missense_Mutation p.S304C 0.25 tolerated(0.07) possibly_damaging(0.474) TCGA-G2-A2EO-01 5 180041111 180041111 G A FLT4 Silent p.D1096D 0.40 TCGA-G2-A2EO-01 5 24505321 24505321 G C CDH10 Missense_Mutation p.I431M 0.22 tolerated(0.12) benign(0.27) TCGA-G2-A2EO-01 5 32087406 32087406 C T PDZD2 Silent p.L1284L 0.25 TCGA-G2-A2EO-01 5 33938274 33938274 G A RXFP3 3'UTR 0.09 TCGA-G2-A2EO-01 5 37019411 37019411 A T NIPBL Splice_Site p.X1641_splice 0.22 TCGA-G2-A2EO-01 5 37064931 37064931 G A NIPBL Silent p.L2784L 0.27 TCGA-G2-A2EO-01 5 52371064 52371064 G A ITGA2 Missense_Mutation p.E919K 0.24 deleterious(0.04) benign(0.156) TCGA-G2-A2EO-01 5 54398487 54398487 G A GZMA 5'UTR 0.24 TCGA-G2-A2EO-01 5 54398580 54398580 G C GZMA Missense_Mutation p.D24H 0.20 tolerated(0.24) possibly_damaging(0.867) TCGA-G2-A2EO-01 5 54567922 54567922 C G DHX29 Missense_Mutation p.E953Q 0.60 tolerated(0.22) probably_damaging(0.912) TCGA-G2-A2EO-01 5 54585110 54585110 C T DHX29 Missense_Mutation p.E352K 0.11 tolerated(0.79) benign(0) TCGA-G2-A2EO-01 5 5464123 5464123 C T KIAA0947 Missense_Mutation p.S1559L 0.13 deleterious(0.02) possibly_damaging(0.713) TCGA-G2-A2EO-01 5 54922343 54922343 C G SLC38A9 Silent p.L555L 0.48 TCGA-G2-A2EO-01 5 65349978 65349978 C T ERBB2IP Silent p.F944F 0.12 TCGA-G2-A2EO-01 5 6620355 6620355 G C NSUN2 Missense_Mutation p.Q227E 0.23 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 5 70751838 70751838 C T BDP1 Missense_Mutation p.S45F 0.26 deleterious(0) possibly_damaging(0.627) TCGA-G2-A2EO-01 5 70805391 70805391 G T BDP1 Missense_Mutation p.R824S 0.12 deleterious(0) probably_damaging(0.957) TCGA-G2-A2EO-01 5 7396443 7396443 C A ADCY2 Missense_Mutation p.L12M 0.25 tolerated(0.07) benign(0.059) TCGA-G2-A2EO-01 5 73981280 73981280 G A HEXB Missense_Mutation p.M65I 0.32 tolerated(0.49) benign(0.001) TCGA-G2-A2EO-01 5 75621207 75621207 C G SV2C Missense_Mutation p.F673L 0.27 tolerated(0.19) probably_damaging(0.998) TCGA-G2-A2EO-01 5 77656440 77656440 C G SCAMP1 5'UTR 0.33 TCGA-G2-A2EO-01 5 7789838 7789838 G A ADCY2 Silent p.L851L 0.28 TCGA-G2-A2EO-01 5 78111889 78111889 C T ARSB Intron 0.13 TCGA-G2-A2EO-01 5 7861360 7861360 C G FASTKD3 Missense_Mutation p.D596H 0.20 deleterious(0) probably_damaging(0.993) TCGA-G2-A2EO-01 5 82850806 82850806 C T VCAN Silent p.L3228L 0.26 TCGA-G2-A2EO-01 5 86564633 86564633 C T RASA1 Missense_Mutation p.S122L 0.20 tolerated_low_confidence(0.2) benign(0.32) TCGA-G2-A2EO-01 6 109769984 109769984 C T MICAL1 Missense_Mutation p.D539N 0.31 tolerated(0.17) benign(0.01) TCGA-G2-A2EO-01 6 110745996 110745996 G T SLC22A16 3'UTR 0.19 TCGA-G2-A2EO-01 6 11190647 11190647 C T NEDD9 Missense_Mutation p.M485I 0.23 deleterious(0.01) benign(0.012) TCGA-G2-A2EO-01 6 116892761 116892761 G A RWDD1 Missense_Mutation p.E6K 0.17 tolerated(0.08) possibly_damaging(0.679) TCGA-G2-A2EO-01 6 116914217 116914217 G A RWDD1 Missense_Mutation p.D229N 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-G2-A2EO-01 6 116938321 116938321 G A RSPH4A Missense_Mutation p.D179N 0.14 tolerated_low_confidence(0.25) benign(0.025) TCGA-G2-A2EO-01 6 117127555 117127555 G A GPRC6A Missense_Mutation p.P438L 0.18 tolerated(0.09) benign(0.014) TCGA-G2-A2EO-01 6 122743440 122743440 C G HSF2 Missense_Mutation p.S276C 0.20 deleterious(0.01) possibly_damaging(0.779) TCGA-G2-A2EO-01 6 132271151 132271151 C G CTGF Missense_Mutation p.E231Q 0.31 tolerated(0.09) possibly_damaging(0.688) TCGA-G2-A2EO-01 6 135679284 135679284 C G AHI1 Missense_Mutation p.D1051H 0.20 deleterious(0.05) possibly_damaging(0.907) TCGA-G2-A2EO-01 6 13592071 13592071 G A SIRT5 Silent p.Q140Q 0.21 TCGA-G2-A2EO-01 6 136681163 136681163 C G MAP7 Missense_Mutation p.E626Q 0.25 deleterious(0) unknown(0) TCGA-G2-A2EO-01 6 138612877 138612877 G C KIAA1244 Missense_Mutation p.E1019Q 0.22 tolerated(0.42) benign(0.313) TCGA-G2-A2EO-01 6 149700238 149700238 G C TAB2 Missense_Mutation p.G396A 0.18 tolerated(0.48) benign(0.206) TCGA-G2-A2EO-01 6 149730837 149730837 G C TAB2 Missense_Mutation p.E688D 0.26 tolerated(0.11) benign(0.055) TCGA-G2-A2EO-01 6 152551728 152551728 C G SYNE1 Missense_Mutation p.R7050P 0.15 benign(0.056) TCGA-G2-A2EO-01 6 159181754 159181754 G A SYTL3 Missense_Mutation p.R464K 0.30 tolerated(0.62) benign(0.002) TCGA-G2-A2EO-01 6 159184504 159184504 G T SYTL3 Missense_Mutation p.M562I 0.12 tolerated(0.56) benign(0.008) TCGA-G2-A2EO-01 6 160905157 160905157 C G LPAL2 RNA 0.30 TCGA-G2-A2EO-01 6 166844058 166844058 C T RPS6KA2 Silent p.L496L 0.24 TCGA-G2-A2EO-01 6 26184038 26184038 G A HIST1H2BE Silent p.A5A 0.27 TCGA-G2-A2EO-01 6 27101075 27101075 G C HIST1H2AG Missense_Mutation p.K75N 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-G2-A2EO-01 6 28966565 28966565 C G ZNF311 Missense_Mutation p.D121H 0.13 deleterious(0.01) benign(0.026) TCGA-G2-A2EO-01 6 29394644 29394644 A G OR11A1 Missense_Mutation p.F259L 0.14 tolerated(0.16) benign(0) TCGA-G2-A2EO-01 6 29694183 29694183 G T HLA-F Intron 0.17 TCGA-G2-A2EO-01 6 30228356 30228356 G A HCG17 Intron 0.21 TCGA-G2-A2EO-01 6 30552094 30552094 G A ABCF1 Missense_Mutation p.E410K 0.22 deleterious(0.03) benign(0.1) TCGA-G2-A2EO-01 6 31631705 31631705 G A GPANK1 Missense_Mutation p.A184V 0.32 deleterious(0) probably_damaging(0.999) TCGA-G2-A2EO-01 6 31685395 31685395 C G LY6G6D Silent p.V72V 0.28 TCGA-G2-A2EO-01 6 31711763 31711763 C G MSH5 Silent p.L166L 0.14 TCGA-G2-A2EO-01 6 32026081 32026081 C T TNXB Missense_Mutation p.E2527K 0.19 probably_damaging(0.986) TCGA-G2-A2EO-01 6 33380560 33380560 G A PHF1 Silent p.K109K 0.27 TCGA-G2-A2EO-01 6 33383647 33383647 G C PHF1 Silent p.S492S 0.24 TCGA-G2-A2EO-01 6 33383743 33383743 G A PHF1 Silent p.G524G 0.26 TCGA-G2-A2EO-01 6 33383754 33383754 G C PHF1 Missense_Mutation p.G528A 0.15 tolerated(0.61) benign(0.303) TCGA-G2-A2EO-01 6 35195426 35195426 C G SCUBE3 Nonsense_Mutation p.S52* 0.31 TCGA-G2-A2EO-01 6 41774070 41774070 C T USP49 Missense_Mutation p.D218N 0.40 tolerated(0.48) benign(0.164) TCGA-G2-A2EO-01 6 42655960 42655960 G A UBR2 Silent p.P1620P 0.12 TCGA-G2-A2EO-01 6 43172787 43172787 C T CUL9 Silent p.F1522F 0.31 TCGA-G2-A2EO-01 6 44148506 44148506 G A CAPN11 Missense_Mutation p.E590K 0.21 deleterious(0.04) benign(0.003) TCGA-G2-A2EO-01 6 44219877 44219877 C G HSP90AB1 Nonsense_Mutation p.S535* 0.16 TCGA-G2-A2EO-01 6 46660346 46660346 G C TDRD6 Missense_Mutation p.S1494T 0.12 tolerated(0.49) benign(0.032) TCGA-G2-A2EO-01 6 46660716 46660716 C G TDRD6 Silent p.L1617L 0.18 TCGA-G2-A2EO-01 6 46660747 46660747 C G TDRD6 Missense_Mutation p.P1628A 0.24 deleterious(0) probably_damaging(0.998) TCGA-G2-A2EO-01 6 46661399 46661399 C G TDRD6 Nonsense_Mutation p.S1845* 0.13 TCGA-G2-A2EO-01 6 46665740 46665740 G C TDRD6 Missense_Mutation p.L2059F 0.18 deleterious(0) possibly_damaging(0.801) TCGA-G2-A2EO-01 6 46996735 46996735 G A GPR110 Silent p.F21F 0.15 TCGA-G2-A2EO-01 6 49754286 49754286 C T PGK2 Silent p.V205V 0.17 TCGA-G2-A2EO-01 6 54805774 54805774 G C FAM83B Missense_Mutation p.D669H 0.20 deleterious(0) probably_damaging(0.914) TCGA-G2-A2EO-01 6 57033351 57033351 G C ZNF451 3'UTR 0.27 TCGA-G2-A2EO-01 6 7229506 7229506 C T RREB1 Nonsense_Mutation p.Q392* 0.15 TCGA-G2-A2EO-01 6 73751754 73751754 G A KCNQ5 Silent p.L195L 0.18 TCGA-G2-A2EO-01 6 73904609 73904609 C G KCNQ5 Missense_Mutation p.I776M 0.33 tolerated(0.22) benign(0.014) TCGA-G2-A2EO-01 6 74150012 74150012 G T MB21D1 Nonsense_Mutation p.S345* 0.26 TCGA-G2-A2EO-01 6 74502507 74502507 C T CD109 Missense_Mutation p.L954F 0.22 deleterious(0.01) benign(0.245) TCGA-G2-A2EO-01 6 75831126 75831126 G C COL12A1 Missense_Mutation p.F2326L 0.23 probably_damaging(0.996) TCGA-G2-A2EO-01 6 7583844 7583844 G C DSP Missense_Mutation p.D2117H 0.20 probably_damaging(0.987) TCGA-G2-A2EO-01 6 90442463 90442463 G A MDN1 Silent p.F1585F 0.13 TCGA-G2-A2EO-01 6 90577917 90577917 G C CASP8AP2 RNA 0.22 TCGA-G2-A2EO-01 6 97247300 97247300 C A GPR63 Missense_Mutation p.C103F 0.26 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 7 100087045 100087045 C G NYAP1 Silent p.L567L 0.29 TCGA-G2-A2EO-01 7 100283618 100283618 C G GIGYF1 Missense_Mutation p.E345Q 0.28 tolerated(0.21) unknown(0) TCGA-G2-A2EO-01 7 100283898 100283898 C G GIGYF1 Missense_Mutation p.E285Q 0.21 deleterious(0.01) unknown(0) TCGA-G2-A2EO-01 7 100284421 100284421 C G GIGYF1 Missense_Mutation p.G182A 0.26 tolerated(0.39) unknown(0) TCGA-G2-A2EO-01 7 106797459 106797459 G C PRKAR2B Missense_Mutation p.E317Q 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-G2-A2EO-01 7 107115258 107115258 G A GPR22 Silent p.K251K 0.25 TCGA-G2-A2EO-01 7 107430026 107430026 G C SLC26A3 Silent p.L226L 0.08 TCGA-G2-A2EO-01 7 114282626 114282626 C T FOXP2 Missense_Mutation p.H338Y 0.23 tolerated(0.12) unknown(0) TCGA-G2-A2EO-01 7 11468661 11468661 C G THSD7A Silent p.G1052G 0.24 TCGA-G2-A2EO-01 7 121652699 121652699 C T PTPRZ1 Missense_Mutation p.P1200L 0.23 deleterious_low_confidence(0) benign(0.424) TCGA-G2-A2EO-01 7 121943827 121943827 G C FEZF1 Missense_Mutation p.S222C 0.24 tolerated(0.12) probably_damaging(0.993) TCGA-G2-A2EO-01 7 124386968 124386968 G T GPR37 Missense_Mutation p.Q485K 0.20 tolerated(0.33) benign(0.411) TCGA-G2-A2EO-01 7 128119545 128119545 C T METTL2B Missense_Mutation p.S179L 0.20 tolerated(0.07) benign(0.014) TCGA-G2-A2EO-01 7 135073470 135073470 C T CNOT4 Intron 0.24 TCGA-G2-A2EO-01 7 138447178 138447178 G A ATP6V0A4 Missense_Mutation p.T140M 0.25 tolerated(0.06) possibly_damaging(0.824) TCGA-G2-A2EO-01 7 138601659 138601659 C T KIAA1549 Missense_Mutation p.A905T 0.30 tolerated(0.35) benign(0.003) TCGA-G2-A2EO-01 7 142423640 142423640 C T TRBV27 Missense_Mutation p.S99L 0.20 TCGA-G2-A2EO-01 7 142448602 142448602 C T TRBV29-1 Nonsense_Mutation p.Q66* 0.33 TCGA-G2-A2EO-01 7 142571845 142571845 G A TRPV6 Silent p.I501I 0.19 TCGA-G2-A2EO-01 7 150028006 150028006 G A ZBED6CL Silent p.E171E 0.16 TCGA-G2-A2EO-01 7 150732745 150732745 G A ABCB8 Silent p.L281L 0.30 TCGA-G2-A2EO-01 7 150864185 150864185 C T GBX1 Missense_Mutation p.D151N 0.25 tolerated(0.34) benign(0) TCGA-G2-A2EO-01 7 157387990 157387990 C A PTPRN2 Missense_Mutation p.R812S 0.25 deleterious(0) probably_damaging(0.983) TCGA-G2-A2EO-01 7 158437065 158437065 G C NCAPG2 Nonsense_Mutation p.S1099* 0.12 TCGA-G2-A2EO-01 7 2701309 2701309 C G TTYH3 Missense_Mutation p.S503C 0.35 deleterious(0) possibly_damaging(0.705) TCGA-G2-A2EO-01 7 27211351 27211351 A C HOXA10 3'UTR 0.94 TCGA-G2-A2EO-01 7 27211670 27211670 G T HOXA10 Missense_Mutation p.L361I 0.10 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 7 2957020 2957020 C G CARD11 Splice_Site p.X870_splice 0.28 TCGA-G2-A2EO-01 7 29726900 29726900 C G DPY19L2P3 RNA 0.25 TCGA-G2-A2EO-01 7 32909880 32909880 C G KBTBD2 Missense_Mutation p.D317H 0.25 deleterious(0) probably_damaging(0.986) TCGA-G2-A2EO-01 7 42949965 42949965 C G C7orf25 Missense_Mutation p.E237Q 0.12 tolerated(0.39) benign(0.046) TCGA-G2-A2EO-01 7 44192943 44192943 C T GCK Silent p.V56V 0.32 TCGA-G2-A2EO-01 7 44193018 44193018 C A GCK Silent p.L31L 0.27 TCGA-G2-A2EO-01 7 44250704 44250704 C G YKT6 Missense_Mutation p.S181C 0.20 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 7 48319282 48319282 C T ABCA13 Silent p.L2831L 0.29 TCGA-G2-A2EO-01 7 48559842 48559842 T G ABCA13 Missense_Mutation p.L4668R 0.10 probably_damaging(0.998) TCGA-G2-A2EO-01 7 53104099 53104099 C T POM121L12 Silent p.L245L 0.20 TCGA-G2-A2EO-01 7 55873034 55873034 G A SEPT14 Nonsense_Mutation p.Q346* 0.09 TCGA-G2-A2EO-01 7 57509909 57509909 C G ZNF716 5'UTR 0.21 TCGA-G2-A2EO-01 7 5983622 5983622 C T RSPH10B Splice_Site p.X510_splice 0.29 TCGA-G2-A2EO-01 7 70228261 70228261 C G AUTS2 Missense_Mutation p.S383C 0.09 deleterious(0.02) benign(0.391) TCGA-G2-A2EO-01 7 72081725 72081725 G C TYW1B Missense_Mutation p.L199V 0.21 tolerated(0.53) benign(0.385) TCGA-G2-A2EO-01 7 73588773 73588773 G A EIF4H Splice_Site p.X20_splice 0.14 TCGA-G2-A2EO-01 7 7622975 7622975 C G MIOS Missense_Mutation p.I540M 0.19 deleterious(0.01) possibly_damaging(0.46) TCGA-G2-A2EO-01 7 76828608 76828608 T G FGL2 Missense_Mutation p.N168T 0.23 deleterious(0.04) benign(0.271) TCGA-G2-A2EO-01 7 76984619 76984619 G A GSAP Silent p.L417L 0.24 TCGA-G2-A2EO-01 7 77256781 77256781 C T PTPN12 Silent p.L595L 0.24 TCGA-G2-A2EO-01 7 81667445 81667445 C T CACNA2D1 Missense_Mutation p.G329E 0.27 tolerated(0.11) probably_damaging(0.994) TCGA-G2-A2EO-01 7 88966042 88966042 C G ZNF804B Missense_Mutation p.S1249W 0.07 deleterious(0) probably_damaging(0.993) TCGA-G2-A2EO-01 7 89789150 89789150 G A STEAP1 Missense_Mutation p.M16I 0.08 tolerated_low_confidence(0.2) benign(0.009) TCGA-G2-A2EO-01 7 90356077 90356077 C G CDK14 Missense_Mutation p.S89C 0.09 deleterious(0.01) benign(0.135) TCGA-G2-A2EO-01 7 91761093 91761093 C T CYP51A1 Missense_Mutation p.E96K 0.24 tolerated(0.23) benign(0.019) TCGA-G2-A2EO-01 7 94166908 94166908 C G CASD1 Missense_Mutation p.S323C 0.22 tolerated(0.32) benign(0.011) TCGA-G2-A2EO-01 7 98548583 98548583 G C TRRAP Missense_Mutation p.E1800Q 0.22 possibly_damaging(0.677) TCGA-G2-A2EO-01 7 98649052 98649052 G C SMURF1 Missense_Mutation p.T245R 0.33 deleterious(0.02) benign(0.33) TCGA-G2-A2EO-01 8 101153700 101153700 G C FBXO43 Missense_Mutation p.S261C 0.33 deleterious(0) possibly_damaging(0.907) TCGA-G2-A2EO-01 8 104412553 104412553 C G SLC25A32 3'UTR 0.21 TCGA-G2-A2EO-01 8 131200403 131200403 G A ASAP1 Silent p.I144I 0.14 TCGA-G2-A2EO-01 8 141754781 141754781 G A PTK2 Missense_Mutation p.A535V 0.21 deleterious(0.05) possibly_damaging(0.753) TCGA-G2-A2EO-01 8 143999073 143999073 C T CYP11B2 Missense_Mutation p.E62K 0.08 deleterious(0.04) probably_damaging(0.967) TCGA-G2-A2EO-01 8 144411579 144411579 C T TOP1MT Missense_Mutation p.D101N 0.11 tolerated(0.08) benign(0.205) TCGA-G2-A2EO-01 8 144463988 144463988 G A RHPN1 Silent p.L549L 0.33 TCGA-G2-A2EO-01 8 144511689 144511689 C T MAFA Silent p.L296L 0.24 TCGA-G2-A2EO-01 8 146156262 146156262 G A ZNF16 Silent p.A637A 0.26 TCGA-G2-A2EO-01 8 17739572 17739572 G C FGL1 Silent p.V60V 0.29 TCGA-G2-A2EO-01 8 22011497 22011497 C G LGI3 Missense_Mutation p.D160H 0.14 tolerated(0.05) benign(0.249) TCGA-G2-A2EO-01 8 22459311 22459311 G C C8orf58 Missense_Mutation p.Q201H 0.29 deleterious(0.04) benign(0.379) TCGA-G2-A2EO-01 8 25343351 25343351 C T CDCA2 Missense_Mutation p.S481L 0.26 deleterious(0.02) possibly_damaging(0.901) TCGA-G2-A2EO-01 8 29921399 29921399 C G TMEM66 3'UTR 0.12 TCGA-G2-A2EO-01 8 37728859 37728859 G T RAB11FIP1 Nonsense_Mutation p.S1154* 0.07 TCGA-G2-A2EO-01 8 42179979 42179979 G A IKBKB Silent p.Q651Q 0.12 TCGA-G2-A2EO-01 8 43197332 43197332 C G POTEA Intron 0.08 TCGA-G2-A2EO-01 8 48711931 48711931 C T PRKDC Silent p.Q3378Q 0.38 TCGA-G2-A2EO-01 8 48801695 48801695 C A PRKDC Missense_Mutation p.G1386V 0.25 possibly_damaging(0.71) TCGA-G2-A2EO-01 8 67507965 67507965 C T MYBL1 Nonsense_Mutation p.W180* 0.40 TCGA-G2-A2EO-01 8 72975076 72975076 G C TRPA1 Missense_Mutation p.I255M 0.15 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 8 75761605 75761605 C G PI15 3'UTR 0.40 TCGA-G2-A2EO-01 8 86022358 86022358 G A LRRCC1 Missense_Mutation p.E107K 0.15 tolerated(0.92) benign(0.003) TCGA-G2-A2EO-01 8 90798902 90798902 G A RIPK2 Missense_Mutation p.D371N 0.09 tolerated(0.74) benign(0.001) TCGA-G2-A2EO-01 8 98155285 98155285 C T CPQ Silent p.F431F 0.30 TCGA-G2-A2EO-01 8 98712020 98712020 G C MTDH Missense_Mutation p.D363H 0.12 deleterious(0) probably_damaging(0.994) TCGA-G2-A2EO-01 8 98787940 98787941 - TGCTTGGAGCTCCAGCAGC LAPTM4B 5'UTR 0.10 TCGA-G2-A2EO-01 8 99234791 99234791 C A NIPAL2 Silent p.V158V 0.11 TCGA-G2-A2EO-01 9 102722413 102722413 C T STX17 Silent p.V186V 0.29 TCGA-G2-A2EO-01 9 104357239 104357239 C T PPP3R2 5'UTR 0.33 TCGA-G2-A2EO-01 9 108456918 108456918 C G TMEM38B 5'UTR 0.30 TCGA-G2-A2EO-01 9 112144707 112144707 C T PTPN3 Silent p.V801V 0.27 TCGA-G2-A2EO-01 9 114904620 114904620 G A SUSD1 Missense_Mutation p.S229F 0.35 deleterious(0.03) probably_damaging(0.975) TCGA-G2-A2EO-01 9 116053935 116053935 G C PRPF4 Missense_Mutation p.E522Q 0.50 deleterious(0.03) possibly_damaging(0.863) TCGA-G2-A2EO-01 9 127289083 127289083 C T NR6A1 Missense_Mutation p.M392I 0.26 deleterious(0.02) possibly_damaging(0.779) TCGA-G2-A2EO-01 9 127289100 127289100 C A NR6A1 Nonsense_Mutation p.E387* 0.28 TCGA-G2-A2EO-01 9 128347847 128347847 C T MAPKAP1 Missense_Mutation p.E220K 0.32 tolerated(0.35) benign(0.086) TCGA-G2-A2EO-01 9 130580997 130580997 G A ENG Nonsense_Mutation p.Q476* 0.39 TCGA-G2-A2EO-01 9 130914210 130914210 C T LCN2 Silent p.L127L 0.33 TCGA-G2-A2EO-01 9 131190687 131190687 C T CERCAM Silent p.I291I 0.16 TCGA-G2-A2EO-01 9 131369932 131369932 G T SPTAN1 Nonsense_Mutation p.E1366* 0.44 TCGA-G2-A2EO-01 9 131768878 131768878 C G NUP188 Missense_Mutation p.S1724C 0.49 deleterious(0.01) benign(0.219) TCGA-G2-A2EO-01 9 13224526 13224526 G A MPDZ Silent p.L80L 0.44 TCGA-G2-A2EO-01 9 135776115 135776115 G C TSC1 Nonsense_Mutation p.S871* 0.37 TCGA-G2-A2EO-01 9 135979668 135979668 C G RALGDS Missense_Mutation p.Q551H 0.28 tolerated(0.06) unknown(0) TCGA-G2-A2EO-01 9 138657499 138657499 G A KCNT1 Silent p.T410T 0.33 TCGA-G2-A2EO-01 9 139390629 139390629 G A NOTCH1 Missense_Mutation p.S2521F 0.21 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 9 139937506 139937506 C T NPDC1 Silent p.G44G 0.16 TCGA-G2-A2EO-01 9 14805073 14805073 C T FREM1 Missense_Mutation p.A1118T 0.45 tolerated(0.16) benign(0.008) TCGA-G2-A2EO-01 9 14805089 14805089 C T FREM1 Silent p.L1112L 0.44 TCGA-G2-A2EO-01 9 19376375 19376375 C G RPS6 Missense_Mutation p.E222D 0.38 tolerated(0.1) benign(0.12) TCGA-G2-A2EO-01 9 21971003 21971003 C T CDKN2A Missense_Mutation p.E119K 0.40 tolerated(0.68) benign(0.084) TCGA-G2-A2EO-01 9 21971036 21971036 C T CDKN2A Missense_Mutation p.D108N 0.36 deleterious(0.03) probably_damaging(0.96) TCGA-G2-A2EO-01 9 26905860 26905860 C G PLAA Missense_Mutation p.Q679H 0.34 tolerated(0.33) benign(0.012) TCGA-G2-A2EO-01 9 33467733 33467733 C T NOL6 Missense_Mutation p.A520T 0.09 tolerated(0.52) benign(0.002) TCGA-G2-A2EO-01 9 34107359 34107359 C T DCAF12 Missense_Mutation p.D180N 0.27 deleterious(0.02) probably_damaging(0.976) TCGA-G2-A2EO-01 9 37776350 37776350 C T TRMT10B Silent p.V264V 0.48 TCGA-G2-A2EO-01 9 72840940 72840940 G C MAMDC2 Missense_Mutation p.E685Q 0.32 tolerated(0.06) possibly_damaging(0.588) TCGA-G2-A2EO-01 9 72962046 72962046 G C SMC5 Missense_Mutation p.R878T 0.21 deleterious(0.05) probably_damaging(0.951) TCGA-G2-A2EO-01 9 77683978 77683978 C G NMRK1 Missense_Mutation p.D144H 0.16 deleterious(0.01) possibly_damaging(0.849) TCGA-G2-A2EO-01 9 86368211 86368211 C T GKAP1 Missense_Mutation p.E268K 0.24 tolerated(0.14) benign(0.181) TCGA-G2-A2EO-01 X 100118475 100118475 G A NOX1 Missense_Mutation p.S84L 0.25 tolerated(0.24) benign(0.044) TCGA-G2-A2EO-01 X 100603636 100603636 G C TIMM8A Missense_Mutation p.S6C 0.40 deleterious(0.04) benign(0.174) TCGA-G2-A2EO-01 X 109695911 109695911 C G RGAG1 Missense_Mutation p.S689C 0.54 deleterious(0.01) probably_damaging(0.957) TCGA-G2-A2EO-01 X 12903875 12903875 C A TLR7 Missense_Mutation p.A83E 0.59 tolerated(1) benign(0.124) TCGA-G2-A2EO-01 X 129058892 129058892 G C UTP14A Missense_Mutation p.E490D 0.26 deleterious(0.05) possibly_damaging(0.595) TCGA-G2-A2EO-01 X 131513695 131513695 C G MBNL3 Nonstop_Mutation p.*355Sext*33 0.61 TCGA-G2-A2EO-01 X 135593382 135593382 G T HTATSF1 Missense_Mutation p.G493V 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.719) TCGA-G2-A2EO-01 X 151138714 151138714 G A GABRE Missense_Mutation p.R73C 0.19 deleterious(0.02) possibly_damaging(0.679) TCGA-G2-A2EO-01 X 153599343 153599343 G C FLNA Missense_Mutation p.R91G 0.62 deleterious(0) probably_damaging(0.972) TCGA-G2-A2EO-01 X 17040287 17040287 G A REPS2 Missense_Mutation p.E147K 0.65 deleterious(0) possibly_damaging(0.721) TCGA-G2-A2EO-01 X 17744900 17744900 C G NHS Missense_Mutation p.L871V 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-G2-A2EO-01 X 44942739 44942739 C - KDM6A Frame_Shift_Del p.P1107Lfs*13 0.76 TCGA-G2-A2EO-01 X 47307191 47307191 C T ZNF41 Missense_Mutation p.E660K 0.41 deleterious(0) probably_damaging(0.988) TCGA-G2-A2EO-01 X 53106214 53106214 C G GPR173 Silent p.L137L 0.67 TCGA-G2-A2EO-01 X 56590553 56590553 G C UBQLN2 Missense_Mutation p.D83H 0.31 deleterious(0) probably_damaging(1) TCGA-G2-A2EO-01 X 70339888 70339888 G C MED12 Missense_Mutation p.E141Q 0.53 probably_damaging(0.926) TCGA-G2-A2EO-01 X 73042995 73042995 G C XIST RNA 0.29 TCGA-G2-A2EO-01 X 76888758 76888758 G C ATRX Missense_Mutation p.Q1691E 0.57 probably_damaging(0.99) TCGA-G2-A2EO-01 X 89177499 89177499 G A TGIF2LX Missense_Mutation p.E139K 0.44 deleterious(0.02) benign(0.008) TCGA-G2-A2ES-01 10 101802152 101802152 C T CPN1 3'UTR 0.24 TCGA-G2-A2ES-01 10 101953102 101953102 T G CHUK Silent p.S687S 0.29 TCGA-G2-A2ES-01 10 103558904 103558904 C T MGEA5 Missense_Mutation p.D502N 0.25 tolerated(0.4) benign(0.213) TCGA-G2-A2ES-01 10 104858711 104858711 G T NT5C2 Missense_Mutation p.L222I 0.27 tolerated(0.13) benign(0.143) TCGA-G2-A2ES-01 10 105110683 105110683 A C PCGF6 Silent p.P47P 0.36 TCGA-G2-A2ES-01 10 105727602 105727619 TTGGGAGATTATAGGAGA - SLK In_Frame_Del p.F33_E39delinsL 0.20 TCGA-G2-A2ES-01 10 106113529 106113529 G A CCDC147 5'UTR 0.29 TCGA-G2-A2ES-01 10 118187433 118187433 G A PNLIPRP3 5'UTR 0.16 TCGA-G2-A2ES-01 10 123844863 123844863 G A TACC2 Missense_Mutation p.E950K 0.27 benign(0.045) TCGA-G2-A2ES-01 10 16563092 16563092 C T C1QL3 5'UTR 0.35 TCGA-G2-A2ES-01 10 17275816 17275816 C T VIM Silent p.I256I 0.41 TCGA-G2-A2ES-01 10 18198261 18198261 T C MRC1 Silent p.L1369L 0.45 TCGA-G2-A2ES-01 10 18242459 18242459 G A SLC39A12 Missense_Mutation p.C85Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 10 27415685 27415685 C A YME1L1 Missense_Mutation p.V354F 0.13 deleterious(0) possibly_damaging(0.594) TCGA-G2-A2ES-01 10 45920479 45920480 - G ALOX5 Frame_Shift_Ins p.L245Cfs*44 0.27 TCGA-G2-A2ES-01 10 46999257 46999257 G A GPRIN2 Missense_Mutation p.R126H 0.12 tolerated(0.44) benign(0.009) TCGA-G2-A2ES-01 10 50916482 50916482 G C C10orf53 Missense_Mutation p.C98S 0.31 deleterious_low_confidence(0) benign(0.291) TCGA-G2-A2ES-01 10 71129055 71129055 C T HK1 Silent p.G222G 0.25 TCGA-G2-A2ES-01 10 75609037 75609037 G A CAMK2G Silent p.I132I 0.20 TCGA-G2-A2ES-01 10 95110980 95110980 G A MYOF Missense_Mutation p.P1299S 0.22 deleterious(0) probably_damaging(0.931) TCGA-G2-A2ES-01 10 98118736 98118736 C T OPALIN 5'UTR 0.27 TCGA-G2-A2ES-01 10 98380234 98380234 G A PIK3AP1 Missense_Mutation p.R606W 0.40 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 11 108464258 108464258 C T EXPH5 Silent p.T2T 0.28 TCGA-G2-A2ES-01 11 108464348 108464348 C T EXPH5 5'UTR 0.47 TCGA-G2-A2ES-01 11 113775663 113775663 C G HTR3B Nonsense_Mutation p.S3* 0.31 TCGA-G2-A2ES-01 11 120187935 120187935 C T POU2F3 Intron 0.33 TCGA-G2-A2ES-01 11 120690613 120690613 C T GRIK4 Silent p.I165I 0.37 TCGA-G2-A2ES-01 11 122929535 122929535 A G HSPA8 Missense_Mutation p.Y443H 0.33 deleterious_low_confidence(0) benign(0.186) TCGA-G2-A2ES-01 11 123676311 123676311 G A OR6M1 Silent p.H249H 0.29 TCGA-G2-A2ES-01 11 26586972 26586972 G A MUC15 Missense_Mutation p.S172F 0.28 deleterious_low_confidence(0.01) benign(0.403) TCGA-G2-A2ES-01 11 27523109 27523109 T C LIN7C Missense_Mutation p.Y54C 0.36 deleterious(0) probably_damaging(0.974) TCGA-G2-A2ES-01 11 33083105 33083105 G C TCP11L1 Missense_Mutation p.E269Q 0.34 tolerated(0.56) benign(0.021) TCGA-G2-A2ES-01 11 34110948 34110948 C G CAPRIN1 Missense_Mutation p.S413C 0.34 deleterious(0.01) possibly_damaging(0.868) TCGA-G2-A2ES-01 11 3430129 3430129 C T TSSC2 RNA 0.56 TCGA-G2-A2ES-01 11 44331236 44331236 C T ALX4 Missense_Mutation p.R126Q 0.24 deleterious_low_confidence(0.02) benign(0.17) TCGA-G2-A2ES-01 11 46563668 46563677 CTCCAGCCTG - AMBRA1 Frame_Shift_Del p.R541* 0.25 TCGA-G2-A2ES-01 11 46895138 46895138 T C LRP4 Silent p.A1412A 0.30 TCGA-G2-A2ES-01 11 47237917 47237917 T C DDB2 Missense_Mutation p.L53P 0.24 tolerated(0.22) benign(0.006) TCGA-G2-A2ES-01 11 55798060 55798060 C T OR5AS1 Nonsense_Mutation p.Q56* 0.22 TCGA-G2-A2ES-01 11 59863129 59863129 A C MS4A2 Nonstop_Mutation p.*245Yext*21 0.24 TCGA-G2-A2ES-01 11 60636673 60636673 C T ZP1 Silent p.V84V 0.34 TCGA-G2-A2ES-01 11 60889102 60889102 G A CD5 Silent p.Q275Q 0.18 TCGA-G2-A2ES-01 11 61404392 61404392 C T RPLP0P2 RNA 0.27 TCGA-G2-A2ES-01 11 64977856 64977856 G A CAPN1 Silent p.S664S 0.33 TCGA-G2-A2ES-01 11 65480123 65480123 G A KAT5 Intron 0.26 TCGA-G2-A2ES-01 11 68115341 68115341 C T LRP5 Missense_Mutation p.R40C 0.11 deleterious(0.01) probably_damaging(1) TCGA-G2-A2ES-01 11 71724518 71724518 G A NUMA1 Missense_Mutation p.S1344F 0.08 probably_damaging(0.999) TCGA-G2-A2ES-01 11 71927861 71927861 C T FOLR2 5'UTR 0.73 TCGA-G2-A2ES-01 11 71943351 71943351 C T INPPL1 Silent p.H561H 0.36 TCGA-G2-A2ES-01 11 77378038 77378038 G C RSF1 Missense_Mutation p.A1417G 0.13 tolerated_low_confidence(0.54) possibly_damaging(0.617) TCGA-G2-A2ES-01 11 78369287 78369287 C G TENM4 Missense_Mutation p.R2709T 0.23 deleterious(0.01) probably_damaging(0.96) TCGA-G2-A2ES-01 11 94201031 94201031 C A MRE11A Missense_Mutation p.R349L 0.48 tolerated(0.09) benign(0.032) TCGA-G2-A2ES-01 12 100377915 100377915 C T ANKS1B Missense_Mutation p.G34E 0.22 deleterious(0.03) possibly_damaging(0.673) TCGA-G2-A2ES-01 12 100378001 100378001 C T ANKS1B Silent p.Q5Q 0.20 TCGA-G2-A2ES-01 12 102569339 102569339 A G PARPBP Silent p.K300K 0.26 TCGA-G2-A2ES-01 12 105558026 105558026 G A KIAA1033 Missense_Mutation p.D1099N 0.30 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 12 110342545 110342545 G T TCHP Missense_Mutation p.A135S 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-G2-A2ES-01 12 110345365 110345365 A T TCHP Missense_Mutation p.Y187F 0.25 tolerated(1) benign(0.003) TCGA-G2-A2ES-01 12 110643412 110643412 C G IFT81 Missense_Mutation p.Q577E 0.24 deleterious(0.01) benign(0.017) TCGA-G2-A2ES-01 12 110927913 110927913 G A FAM216A Missense_Mutation p.E265K 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G2-A2ES-01 12 112097074 112097074 C T BRAP Missense_Mutation p.E350K 0.22 tolerated(0.24) benign(0.194) TCGA-G2-A2ES-01 12 114358488 114358488 G C RBM19 Silent p.L771L 0.31 TCGA-G2-A2ES-01 12 118693250 118693250 T G TAOK3 Intron 0.23 TCGA-G2-A2ES-01 12 132547111 132547111 G A EP400 Silent p.Q2733Q 0.12 TCGA-G2-A2ES-01 12 132547117 132547117 G A EP400 Silent p.Q2735Q 0.12 TCGA-G2-A2ES-01 12 132547120 132547120 G A EP400 Silent p.Q2736Q 0.13 TCGA-G2-A2ES-01 12 133381318 133381318 G A GOLGA3 Silent p.L527L 0.29 TCGA-G2-A2ES-01 12 15100819 15100819 T C ARHGDIB Silent p.K110K 0.28 TCGA-G2-A2ES-01 12 26810951 26810951 G A ITPR2 Nonsense_Mutation p.Q667* 0.28 TCGA-G2-A2ES-01 12 278230 278230 G A IQSEC3 Missense_Mutation p.G1008E 0.31 deleterious(0.01) benign(0.009) TCGA-G2-A2ES-01 12 40618867 40618867 C T LRRK2 5'Flank 0.25 TCGA-G2-A2ES-01 12 44148459 44148459 A T PUS7L Missense_Mutation p.V197E 0.29 deleterious(0) probably_damaging(0.973) TCGA-G2-A2ES-01 12 4662181 4662181 G A RAD51AP1 Missense_Mutation p.E214K 0.23 deleterious(0.03) probably_damaging(0.925) TCGA-G2-A2ES-01 12 49110507 49110507 G C CCNT1 5'UTR 0.10 TCGA-G2-A2ES-01 12 49392962 49392962 C A DDN Nonsense_Mutation p.E37* 0.35 TCGA-G2-A2ES-01 12 53345517 53345517 T G KRT18 Missense_Mutation p.I275M 0.15 tolerated(0.07) benign(0.279) TCGA-G2-A2ES-01 12 53473128 53473128 C T SPRYD3 5'UTR 0.27 TCGA-G2-A2ES-01 12 53689715 53689715 G A PFDN5 Silent p.K55K 0.38 TCGA-G2-A2ES-01 12 57037667 57037667 G A ATP5B Silent p.I187I 0.23 TCGA-G2-A2ES-01 12 58174278 58174278 A G METTL21B Missense_Mutation p.Y177C 0.36 deleterious(0) probably_damaging(0.979) TCGA-G2-A2ES-01 12 6128469 6128469 A G VWF Missense_Mutation p.I1372T 0.28 tolerated(0.3) possibly_damaging(0.7) TCGA-G2-A2ES-01 12 6436472 6436472 G T PLEKHG6 Missense_Mutation p.D575Y 0.25 deleterious(0) probably_damaging(0.935) TCGA-G2-A2ES-01 12 6494189 6494213 CACCTATGTCTCAGCTAAATGTAGC - LTBR Frame_Shift_Del p.T66Afs*22 0.24 TCGA-G2-A2ES-01 12 65116858 65116858 G T GNS Silent p.V412V 0.29 TCGA-G2-A2ES-01 12 7024941 7024964 CTAAGCCTCTTATCTTTCTCCTTC - ENO2 5'UTR 0.21 TCGA-G2-A2ES-01 12 80202350 80202350 T C PPP1R12A Missense_Mutation p.D488G 0.24 deleterious(0.01) benign(0.379) TCGA-G2-A2ES-01 12 99120994 99120994 C T APAF1 Missense_Mutation p.P1167L 0.16 tolerated(0.14) benign(0.026) TCGA-G2-A2ES-01 13 101759884 101759884 T A NALCN Missense_Mutation p.R845W 0.32 tolerated(0.11) benign(0.106) TCGA-G2-A2ES-01 13 108518492 108518492 G A FAM155A Silent p.D151D 0.36 TCGA-G2-A2ES-01 13 37422860 37422860 G C SMAD9 Missense_Mutation p.L453V 0.34 deleterious(0.01) benign(0.057) TCGA-G2-A2ES-01 13 39263139 39263139 T C FREM2 Missense_Mutation p.L553S 0.34 deleterious(0) possibly_damaging(0.548) TCGA-G2-A2ES-01 13 60240843 60240843 C T DIAPH3 Missense_Mutation p.E1153K 0.31 tolerated_low_confidence(0.14) probably_damaging(0.993) TCGA-G2-A2ES-01 13 86370509 86370509 T G SLITRK6 Silent p.L45L 0.41 TCGA-G2-A2ES-01 14 102452341 102452341 C T DYNC1H1 Silent p.V593V 0.35 TCGA-G2-A2ES-01 14 102493553 102493553 T C DYNC1H1 Silent p.V2938V 0.26 TCGA-G2-A2ES-01 14 20296468 20296468 T A OR4N2 Nonsense_Mutation p.Y287* 0.23 TCGA-G2-A2ES-01 14 20586496 20586496 C T OR4K17 Missense_Mutation p.P311S 0.25 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 14 20848088 20848088 C A TEP1 Splice_Site p.X1709_splice 0.22 TCGA-G2-A2ES-01 14 22592136 22592136 A G TRAV26-1 Missense_Mutation p.N74S 0.18 tolerated(0.23) benign(0.03) TCGA-G2-A2ES-01 14 23881984 23881984 C A MYH7 3'UTR 0.38 TCGA-G2-A2ES-01 14 24034889 24034889 T C AP1G2 Missense_Mutation p.I223V 0.20 tolerated(0.11) benign(0.034) TCGA-G2-A2ES-01 14 65233350 65233350 C T SPTB Intron 0.34 TCGA-G2-A2ES-01 14 69256333 69256333 T G ZFP36L1 Missense_Mutation p.S312R 0.22 deleterious(0) probably_damaging(0.969) TCGA-G2-A2ES-01 14 69521082 69521082 G T DCAF5 Missense_Mutation p.P774H 0.22 deleterious_low_confidence(0.01) benign(0.09) TCGA-G2-A2ES-01 14 70512799 70512799 C T SLC8A3 Silent p.R883R 0.21 TCGA-G2-A2ES-01 14 73659343 73659369 TTTTTTCAGGGAAGTGTTTAAAACCTA - PSEN1 Splice_Site p.X183_splice 0.18 TCGA-G2-A2ES-01 14 74438593 74438595 ATA TT ENTPD5 Frame_Shift_Del p.L350* 0.14 TCGA-G2-A2ES-01 14 75989032 75989032 C T BATF Missense_Mutation p.H3Y 0.26 tolerated(0.12) unknown(0) TCGA-G2-A2ES-01 14 88459416 88459416 C T GALC Silent p.L31L 0.29 TCGA-G2-A2ES-01 14 91792370 91792370 C T CCDC88C Missense_Mutation p.E361K 0.24 deleterious(0.01) probably_damaging(0.923) TCGA-G2-A2ES-01 14 93412799 93412799 C T ITPK1 Missense_Mutation p.E260K 0.23 tolerated(0.08) benign(0.283) TCGA-G2-A2ES-01 14 94526714 94526714 G C DDX24 Missense_Mutation p.P548R 0.28 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 14 94563251 94563251 G A IFI27L1 5'UTR 0.32 TCGA-G2-A2ES-01 14 94674875 94674875 C T PPP4R4 Missense_Mutation p.T89M 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-G2-A2ES-01 15 100821443 100821443 G A ADAMTS17 Silent p.V260V 0.19 TCGA-G2-A2ES-01 15 101906500 101906500 C T PCSK6 Missense_Mutation p.E586K 0.10 deleterious(0.03) probably_damaging(0.925) TCGA-G2-A2ES-01 15 23330999 23330999 C - HERC2P2 RNA 0.10 TCGA-G2-A2ES-01 15 23931699 23931699 C T NDN Nonsense_Mutation p.W222* 0.27 TCGA-G2-A2ES-01 15 27765177 27765177 A T GABRG3 Missense_Mutation p.I258F 0.40 tolerated(0.35) probably_damaging(0.99) TCGA-G2-A2ES-01 15 31239408 31239408 C T MTMR10 Silent p.L491L 0.25 TCGA-G2-A2ES-01 15 35212624 35212624 A C AQR Missense_Mutation p.L377R 0.25 deleterious(0) probably_damaging(0.992) TCGA-G2-A2ES-01 15 40627555 40627555 A G C15orf52 Missense_Mutation p.L470P 0.32 tolerated(0.3) benign(0.009) TCGA-G2-A2ES-01 15 41037420 41037420 C T RMDN3 Missense_Mutation p.D188N 0.43 deleterious(0.01) possibly_damaging(0.627) TCGA-G2-A2ES-01 15 42168429 42168429 C T SPTBN5 Silent p.L1335L 0.28 TCGA-G2-A2ES-01 15 42170747 42170747 T A SPTBN5 Missense_Mutation p.Q1088L 0.23 possibly_damaging(0.804) TCGA-G2-A2ES-01 15 43531079 43531079 G A TGM5 Silent p.I427I 0.33 TCGA-G2-A2ES-01 15 48559784 48559784 G T SLC12A1 Missense_Mutation p.E727D 0.29 tolerated(0.18) probably_damaging(0.954) TCGA-G2-A2ES-01 15 63579740 63579740 A G APH1B Missense_Mutation p.Y158C 0.31 deleterious(0.04) benign(0.269) TCGA-G2-A2ES-01 15 64592686 64592686 T C CSNK1G1 Missense_Mutation p.S5G 0.25 tolerated_low_confidence(0.27) benign(0.007) TCGA-G2-A2ES-01 15 73616530 73616530 G T HCN4 Silent p.L681L 0.28 TCGA-G2-A2ES-01 15 76222340 76222340 C T FBXO22 Silent p.I248I 0.26 TCGA-G2-A2ES-01 15 78758655 78758655 G A IREB2 Silent p.Q151Q 0.35 TCGA-G2-A2ES-01 15 79090340 79090340 C G ADAMTS7 Missense_Mutation p.R191T 0.21 tolerated(0.28) benign(0.142) TCGA-G2-A2ES-01 15 84651522 84651522 G A ADAMTSL3 Missense_Mutation p.D1048N 0.24 tolerated(0.4) benign(0.017) TCGA-G2-A2ES-01 15 85401501 85401501 G A ALPK3 Missense_Mutation p.G1380R 0.27 deleterious(0.04) benign(0.139) TCGA-G2-A2ES-01 15 86123759 86123759 A T AKAP13 Silent p.T820T 0.28 TCGA-G2-A2ES-01 15 90245001 90245001 G C WDR93 Missense_Mutation p.Q8H 0.25 tolerated_low_confidence(0.44) possibly_damaging(0.652) TCGA-G2-A2ES-01 15 91172733 91172733 C A CRTC3 Missense_Mutation p.T412N 0.27 deleterious(0) benign(0.424) TCGA-G2-A2ES-01 15 99459355 99459355 C T IGF1R Missense_Mutation p.S664F 0.30 tolerated(0.09) benign(0.111) TCGA-G2-A2ES-01 15 99459919 99459919 A C IGF1R Missense_Mutation p.K672T 0.29 tolerated(0.71) benign(0.007) TCGA-G2-A2ES-01 16 1395092 1395092 C G BAIAP3 Missense_Mutation p.I679M 0.25 deleterious(0.01) possibly_damaging(0.482) TCGA-G2-A2ES-01 16 14761813 14761813 C T BFAR 3'UTR 0.39 TCGA-G2-A2ES-01 16 18864945 18864945 C T SMG1 Silent p.T1576T 0.21 TCGA-G2-A2ES-01 16 19539318 19539318 C T CCP110 Missense_Mutation p.H39Y 0.28 tolerated(0.2) probably_damaging(0.969) TCGA-G2-A2ES-01 16 19656273 19656273 T C C16orf62 Splice_Site p.X732_splice 0.22 TCGA-G2-A2ES-01 16 20410448 20410448 G T PDILT Missense_Mutation p.Q59K 0.26 deleterious(0.01) benign(0.174) TCGA-G2-A2ES-01 16 20975839 20975839 T C DNAH3 Missense_Mutation p.T3123A 0.23 deleterious(0.05) benign(0.008) TCGA-G2-A2ES-01 16 21416159 21416159 G C NPIPB3 Silent p.L183L 0.17 TCGA-G2-A2ES-01 16 2259011 2259011 C T MLST8 3'UTR 0.26 TCGA-G2-A2ES-01 16 24226045 24226045 G A PRKCB Missense_Mutation p.D644N 0.35 deleterious(0.03) possibly_damaging(0.723) TCGA-G2-A2ES-01 16 24267967 24267967 G T CACNG3 5'UTR 0.27 TCGA-G2-A2ES-01 16 27472877 27472877 C T GTF3C1 Missense_Mutation p.E2042K 0.30 tolerated(0.07) benign(0.272) TCGA-G2-A2ES-01 16 2808993 2808993 G A SRRM2 Missense_Mutation p.E201K 0.33 unknown(0) TCGA-G2-A2ES-01 16 28883959 28883959 T A SH2B1 Silent p.P610P 0.32 TCGA-G2-A2ES-01 16 28914209 28914209 C T ATP2A1 Silent p.I907I 0.30 TCGA-G2-A2ES-01 16 28963486 28963486 C G NFATC2IP Missense_Mutation p.L141V 0.30 tolerated(0.13) benign(0.007) TCGA-G2-A2ES-01 16 29994162 29994162 G A TAOK2 Silent p.K313K 0.26 TCGA-G2-A2ES-01 16 31157215 31157215 G A PRSS36 Silent p.T205T 0.26 TCGA-G2-A2ES-01 16 31288291 31288291 C G ITGAM Silent p.V378V 0.39 TCGA-G2-A2ES-01 16 3254779 3254779 T C OR1F1 Missense_Mutation p.F178S 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-G2-A2ES-01 16 5083318 5083318 C T NAGPA Silent p.Q166Q 0.39 TCGA-G2-A2ES-01 16 5123184 5123184 A T ALG1 Missense_Mutation p.K106I 0.17 deleterious(0) probably_damaging(0.948) TCGA-G2-A2ES-01 16 57492236 57492236 C G COQ9 Missense_Mutation p.H229D 0.36 deleterious(0) possibly_damaging(0.694) TCGA-G2-A2ES-01 16 57496641 57496641 C T POLR2C Missense_Mutation p.P2L 0.26 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 16 57596033 57596033 T C GPR114 Missense_Mutation p.C10R 0.30 deleterious(0.01) possibly_damaging(0.564) TCGA-G2-A2ES-01 16 58621689 58621689 G A CNOT1 Nonsense_Mutation p.Q102* 0.29 TCGA-G2-A2ES-01 16 67323569 67323569 G T KCTD19 Missense_Mutation p.A895D 0.17 deleterious(0) possibly_damaging(0.859) TCGA-G2-A2ES-01 16 70367484 70367484 G A DDX19B Silent p.%3D 0.44 TCGA-G2-A2ES-01 16 70506488 70506488 C T FUK Silent p.F462F 0.24 TCGA-G2-A2ES-01 16 70543163 70543163 A G COG4 Missense_Mutation p.F325L 0.03 tolerated(0.13) benign(0.299) TCGA-G2-A2ES-01 16 836923 836923 C T RPUSD1 Missense_Mutation p.E139K 0.19 tolerated(0.16) benign(0.129) TCGA-G2-A2ES-01 16 84444355 84444355 C T ATP2C2 Missense_Mutation p.P167S 0.23 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 16 86600911 86600911 G A FOXC2 5'UTR 0.15 TCGA-G2-A2ES-01 16 89962447 89962447 C T TCF25 Silent p.L326L 0.25 TCGA-G2-A2ES-01 16 9857968 9857968 C T GRIN2A Missense_Mutation p.V1145M 0.23 tolerated(0.13) benign(0.136) TCGA-G2-A2ES-01 17 10101629 10101629 C T GAS7 Missense_Mutation p.E27K 0.24 tolerated(0.07) possibly_damaging(0.593) TCGA-G2-A2ES-01 17 18217940 18217940 G C TOP3A Missense_Mutation p.D51E 0.25 tolerated(0.74) benign(0.02) TCGA-G2-A2ES-01 17 19316617 19316617 A C RNF112 Silent p.R205R 0.32 TCGA-G2-A2ES-01 17 19618059 19618059 G A SLC47A2 Missense_Mutation p.S90L 0.21 tolerated(0.07) benign(0.297) TCGA-G2-A2ES-01 17 2264993 2264993 G C SGSM2 Missense_Mutation p.D66H 0.18 deleterious(0.01) benign(0.209) TCGA-G2-A2ES-01 17 26732963 26732963 T G SLC46A1 Missense_Mutation p.Y57S 0.13 deleterious(0.02) possibly_damaging(0.745) TCGA-G2-A2ES-01 17 27076071 27076071 C T TRAF4 Nonsense_Mutation p.R297* 0.34 TCGA-G2-A2ES-01 17 28506137 28506137 A G NSRP1 Silent p.A110A 0.26 TCGA-G2-A2ES-01 17 29220513 29220513 G - ATAD5 Frame_Shift_Del p.A1548Lfs*11 0.18 TCGA-G2-A2ES-01 17 30632423 30632423 A G RHBDL3 Missense_Mutation p.Y282C 0.26 deleterious(0) probably_damaging(0.998) TCGA-G2-A2ES-01 17 34105915 34105915 C A MMP28 Missense_Mutation p.R119L 0.25 deleterious(0.04) possibly_damaging(0.829) TCGA-G2-A2ES-01 17 34310878 34310878 T C CCL14 Missense_Mutation p.K97E 0.23 tolerated(0.64) benign(0.002) TCGA-G2-A2ES-01 17 38458227 38458227 A G CDC6 Missense_Mutation p.N553D 0.28 deleterious(0.01) benign(0.062) TCGA-G2-A2ES-01 17 38564250 38564251 - T TOP2A Frame_Shift_Ins p.I490Nfs*10 0.21 TCGA-G2-A2ES-01 17 38567656 38567656 C T TOP2A Missense_Mutation p.D339N 0.17 tolerated(0.11) benign(0.107) TCGA-G2-A2ES-01 17 39925391 39925391 C T JUP Silent p.L179L 0.26 TCGA-G2-A2ES-01 17 40025748 40025748 T A ACLY Silent p.V1010V 0.30 TCGA-G2-A2ES-01 17 40947024 40947024 C T WNK4 Missense_Mutation p.P862L 0.30 tolerated(0.13) unknown(0) TCGA-G2-A2ES-01 17 45455230 45455230 G A EFCAB13 Missense_Mutation p.E491K 0.24 tolerated(1) benign(0.001) TCGA-G2-A2ES-01 17 4636488 4636488 G A MED11 3'UTR 0.48 TCGA-G2-A2ES-01 17 48628506 48628506 C T SPATA20 Missense_Mutation p.R511W 0.17 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 17 56082801 56082801 G A SRSF1 Missense_Mutation p.S238F 0.24 tolerated(0.11) benign(0.184) TCGA-G2-A2ES-01 17 57763022 57763022 A C CLTC Missense_Mutation p.E1560D 0.25 tolerated(0.6) possibly_damaging(0.662) TCGA-G2-A2ES-01 17 59999159 59999159 G A INTS2 Silent p.F162F 0.22 TCGA-G2-A2ES-01 17 61987572 61987572 C T CSHL1 Missense_Mutation p.D141N 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-G2-A2ES-01 17 63156668 63156668 G A RGS9 Nonsense_Mutation p.W109* 0.27 TCGA-G2-A2ES-01 17 65989269 65989269 C G C17orf58 5'UTR 0.24 TCGA-G2-A2ES-01 17 67257837 67257837 G A ABCA5 Missense_Mutation p.A1123V 0.25 tolerated(0.56) benign(0.006) TCGA-G2-A2ES-01 17 72249233 72249233 G A TTYH2 Missense_Mutation p.D425N 0.29 tolerated(0.11) benign(0.073) TCGA-G2-A2ES-01 17 72308171 72308171 G C DNAI2 Missense_Mutation p.K508N 0.36 deleterious(0) probably_damaging(0.972) TCGA-G2-A2ES-01 17 72838777 72838777 G A GRIN2C Missense_Mutation p.H1167Y 0.33 deleterious_low_confidence(0.01) benign(0.229) TCGA-G2-A2ES-01 17 73489996 73489996 C T KIAA0195 Silent p.D802D 0.23 TCGA-G2-A2ES-01 17 73559178 73559178 C T LLGL2 Silent p.I204I 0.42 TCGA-G2-A2ES-01 17 73559467 73559467 C G LLGL2 Missense_Mutation p.S250C 0.21 deleterious(0.03) benign(0.031) TCGA-G2-A2ES-01 17 74003727 74003727 G A EVPL Silent p.I1853I 0.26 TCGA-G2-A2ES-01 17 74068493 74068493 C T SRP68 Missense_Mutation p.S27N 0.33 tolerated_low_confidence(0.57) benign(0.035) TCGA-G2-A2ES-01 17 74085384 74085384 C A EXOC7 Missense_Mutation p.D358Y 0.37 deleterious(0) possibly_damaging(0.784) TCGA-G2-A2ES-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.57 tolerated(0.11) benign(0.308) TCGA-G2-A2ES-01 17 76817134 76817134 G T USP36 Missense_Mutation p.S256Y 0.70 tolerated(0.08) probably_damaging(0.978) TCGA-G2-A2ES-01 17 7761743 7761743 C T CYB5D1 Silent p.I61I 0.47 TCGA-G2-A2ES-01 17 77756006 77756006 C G CBX2 Intron 0.19 TCGA-G2-A2ES-01 17 78166356 78166356 G T CARD14 Missense_Mutation p.V432L 0.25 tolerated(0.13) benign(0.098) TCGA-G2-A2ES-01 17 78970862 78970862 A G CHMP6 Missense_Mutation p.E135G 0.25 deleterious(0.01) possibly_damaging(0.788) TCGA-G2-A2ES-01 17 79668080 79668080 C T HGS Silent p.L714L 0.20 TCGA-G2-A2ES-01 17 79916822 79916822 G A NOTUM Silent p.N174N 0.29 TCGA-G2-A2ES-01 18 13059227 13059227 G C CEP192 Silent p.S1468S 0.29 TCGA-G2-A2ES-01 18 13069784 13069784 C T CEP192 Silent p.L1701L 0.31 TCGA-G2-A2ES-01 18 29102165 29102165 A C DSG2 Missense_Mutation p.K215Q 0.33 deleterious(0.02) possibly_damaging(0.658) TCGA-G2-A2ES-01 18 29775413 29775413 C T MEP1B Missense_Mutation p.P72L 0.31 deleterious(0) probably_damaging(0.994) TCGA-G2-A2ES-01 18 3255845 3255845 A T MYL12A Nonsense_Mutation p.K149* 0.29 TCGA-G2-A2ES-01 18 3499238 3499238 G A DLGAP1 Missense_Mutation p.T960I 0.31 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 18 43487976 43487976 G A EPG5 Silent p.L1426L 0.27 TCGA-G2-A2ES-01 18 46447736 46447736 A T SMAD7 3'UTR 0.19 TCGA-G2-A2ES-01 18 47088757 47088757 C A LIPG Missense_Mutation p.P27T 0.26 deleterious(0.04) possibly_damaging(0.597) TCGA-G2-A2ES-01 18 47800609 47800626 TGCCCCCGAATTTGGGCT - MBD1 In_Frame_Del p.K359_G364del 0.32 TCGA-G2-A2ES-01 18 48190843 48190843 C T MAPK4 Missense_Mutation p.A172V 0.20 deleterious(0) probably_damaging(0.997) TCGA-G2-A2ES-01 18 65178545 65178545 G A DSEL Missense_Mutation p.H1111Y 0.21 tolerated(0.26) benign(0.013) TCGA-G2-A2ES-01 18 72913707 72913707 C T ZADH2 Silent p.L266L 0.27 TCGA-G2-A2ES-01 18 77794534 77794534 G T RBFA Silent p.A13A 0.18 TCGA-G2-A2ES-01 19 1073267 1073267 G T HMHA1 Missense_Mutation p.G197C 0.26 deleterious(0.02) possibly_damaging(0.651) TCGA-G2-A2ES-01 19 11094925 11094925 G A SMARCA4 Missense_Mutation p.G33D 0.18 unknown(0) TCGA-G2-A2ES-01 19 1270999 1270999 G A CIRBP Missense_Mutation p.E23K 0.28 deleterious(0.02) possibly_damaging(0.842) TCGA-G2-A2ES-01 19 13988429 13988429 C T NANOS3 Missense_Mutation p.H123Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-G2-A2ES-01 19 15466028 15466028 C T AKAP8 Missense_Mutation p.G593R 0.30 deleterious(0.05) benign(0.02) TCGA-G2-A2ES-01 19 17837423 17837423 C T MAP1S Silent p.A410A 0.36 TCGA-G2-A2ES-01 19 18965703 18965703 G A UPF1 Silent p.L427L 0.31 TCGA-G2-A2ES-01 19 19790184 19790184 G T ZNF101 Missense_Mutation p.R129L 0.30 tolerated(0.36) benign(0.003) TCGA-G2-A2ES-01 19 21493399 21493399 C T ZNF708 Missense_Mutation p.E12K 0.22 deleterious(0.03) possibly_damaging(0.764) TCGA-G2-A2ES-01 19 33072194 33072194 G A PDCD5 Silent p.L9L 0.38 TCGA-G2-A2ES-01 19 33106574 33106574 G A ANKRD27 Missense_Mutation p.P722L 0.23 deleterious(0.05) possibly_damaging(0.908) TCGA-G2-A2ES-01 19 34919421 34919421 C T UBA2 Silent p.I28I 0.29 TCGA-G2-A2ES-01 19 35758181 35758181 C T LSR Silent p.A486A 0.33 TCGA-G2-A2ES-01 19 35823632 35823632 G A CD22 Missense_Mutation p.G73R 0.28 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 19 39292541 39292541 G C LGALS4 Missense_Mutation p.R279G 0.29 deleterious(0) probably_damaging(0.985) TCGA-G2-A2ES-01 19 40030040 40030040 A C EID2 Missense_Mutation p.L227R 0.24 deleterious(0) possibly_damaging(0.883) TCGA-G2-A2ES-01 19 40901699 40901699 G A PRX Silent p.L854L 0.22 TCGA-G2-A2ES-01 19 4159761 4159761 G A CREB3L3 Silent p.S186S 0.27 TCGA-G2-A2ES-01 19 4258352 4258352 G A CCDC94 Silent p.L173L 0.26 TCGA-G2-A2ES-01 19 42797418 42797418 G A CIC Silent p.K1260K 0.25 TCGA-G2-A2ES-01 19 4292481 4292481 G T TMIGD2 3'UTR 0.32 TCGA-G2-A2ES-01 19 4453498 4453498 T G UBXN6 Missense_Mutation p.E90A 0.24 deleterious(0.02) benign(0.091) TCGA-G2-A2ES-01 19 4453499 4453499 C T UBXN6 Missense_Mutation p.E90K 0.24 deleterious(0) benign(0.013) TCGA-G2-A2ES-01 19 44635316 44635316 G C ZNF225 Missense_Mutation p.K183N 0.21 tolerated(0.06) probably_damaging(0.996) TCGA-G2-A2ES-01 19 44980836 44980836 G C ZNF180 Missense_Mutation p.T621S 0.31 tolerated(0.06) possibly_damaging(0.78) TCGA-G2-A2ES-01 19 4525642 4525642 C T PLIN5 Intron 0.24 TCGA-G2-A2ES-01 19 45871992 45871992 C G ERCC2 Missense_Mutation p.E86Q 0.21 deleterious(0) probably_damaging(0.99) TCGA-G2-A2ES-01 19 47422461 47422461 C G ARHGAP35 Missense_Mutation p.Q177E 0.23 deleterious(0) probably_damaging(0.992) TCGA-G2-A2ES-01 19 47865850 47865850 G C DHX34 Missense_Mutation p.G498A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2ES-01 19 49652416 49652416 G A PPFIA3 Silent p.Q1092Q 0.31 TCGA-G2-A2ES-01 19 50031853 50031853 G A RCN3 Missense_Mutation p.D42N 0.27 tolerated(0.13) benign(0.084) TCGA-G2-A2ES-01 19 50365522 50365522 G A PNKP Missense_Mutation p.S349L 0.25 deleterious(0.05) benign(0.005) TCGA-G2-A2ES-01 19 51169762 51169762 C G SHANK1 Missense_Mutation p.E1819Q 0.27 unknown(0) TCGA-G2-A2ES-01 19 54974069 54974069 G A LENG9 Missense_Mutation p.A236V 0.36 tolerated(0.15) benign(0.004) TCGA-G2-A2ES-01 19 55593171 55593171 G C EPS8L1 Missense_Mutation p.E269Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-G2-A2ES-01 19 56388434 56388434 G A NLRP4 Silent p.L866L 0.25 TCGA-G2-A2ES-01 19 56935524 56935524 A T ZNF583 Missense_Mutation p.K499N 0.29 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 19 57716855 57716855 G A ZNF264 Missense_Mutation p.C84Y 0.20 tolerated(0.4) benign(0.002) TCGA-G2-A2ES-01 19 7676817 7676817 G A CAMSAP3 Missense_Mutation p.D507N 0.26 tolerated(0.37) probably_damaging(0.995) TCGA-G2-A2ES-01 19 872058 872058 G T MED16 Silent p.R656R 0.21 TCGA-G2-A2ES-01 19 9064866 9064866 G T MUC16 Missense_Mutation p.S7527Y 0.30 unknown(0) TCGA-G2-A2ES-01 19 9213259 9213259 T C OR7G2 Missense_Mutation p.I242V 0.24 deleterious(0.02) benign(0.31) TCGA-G2-A2ES-01 1 10239490 10239490 C G UBE4B Silent p.T1239T 0.15 TCGA-G2-A2ES-01 1 111966296 111966296 C G OVGP1 Missense_Mutation p.E118Q 0.22 tolerated(0.7) benign(0.072) TCGA-G2-A2ES-01 1 114196636 114196636 A G MAGI3 Silent p.P875P 0.27 TCGA-G2-A2ES-01 1 117559992 117559992 C G CD101 Missense_Mutation p.I503M 0.25 tolerated(0.12) benign(0.043) TCGA-G2-A2ES-01 1 118506543 118506543 T C SPAG17 Missense_Mutation p.N2184S 0.24 tolerated(0.4) benign(0.275) TCGA-G2-A2ES-01 1 120462024 120462024 C T NOTCH2 Missense_Mutation p.D1898N 0.22 tolerated(0.13) probably_damaging(0.998) TCGA-G2-A2ES-01 1 145541826 145541826 C T ITGA10 Missense_Mutation p.R1117W 0.23 deleterious(0) possibly_damaging(0.762) TCGA-G2-A2ES-01 1 149399188 149399188 G A HIST2H3PS2 3'Flank 0.20 TCGA-G2-A2ES-01 1 149762804 149762804 C T FCGR1A Missense_Mutation p.P286S 0.19 tolerated(0.53) benign(0.018) TCGA-G2-A2ES-01 1 150679028 150679028 C A HORMAD1 Splice_Site p.X268_splice 0.11 TCGA-G2-A2ES-01 1 150990968 150990968 T G PRUNE Missense_Mutation p.V53G 0.16 deleterious(0) probably_damaging(0.94) TCGA-G2-A2ES-01 1 151020344 151020344 G A C1orf56 Silent p.A7A 0.21 TCGA-G2-A2ES-01 1 152595580 152595580 C T LCE3A 5'Flank 0.46 TCGA-G2-A2ES-01 1 155145217 155145217 G A RP11-201K10.3 Missense_Mutation p.H120Y 0.30 unknown(0) TCGA-G2-A2ES-01 1 155247568 155247568 C T HCN3 Missense_Mutation p.R63W 0.35 deleterious(0) probably_damaging(0.978) TCGA-G2-A2ES-01 1 155247576 155247576 C T HCN3 Silent p.F65F 0.37 TCGA-G2-A2ES-01 1 155490915 155490915 C T ASH1L Silent p.K132K 0.21 TCGA-G2-A2ES-01 1 155838178 155838178 G C SYT11 Missense_Mutation p.E153Q 0.25 tolerated(0.12) benign(0.232) TCGA-G2-A2ES-01 1 155838197 155838197 G A SYT11 Missense_Mutation p.G159E 0.24 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 1 156180072 156180072 G A SLC25A44 Silent p.L265L 0.32 TCGA-G2-A2ES-01 1 156561602 156561602 C T APOA1BP Silent p.S2S 0.17 TCGA-G2-A2ES-01 1 156779017 156779017 G T SH2D2A Missense_Mutation p.S337Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-G2-A2ES-01 1 158326312 158326312 T G CD1E Missense_Mutation p.L310R 0.21 deleterious(0) probably_damaging(0.942) TCGA-G2-A2ES-01 1 15988088 15988088 A T RSC1A1 Silent p.T575T 0.23 TCGA-G2-A2ES-01 1 161140930 161140930 A C PPOX Silent p.A466A 0.19 TCGA-G2-A2ES-01 1 161196240 161196240 C T TOMM40L 5'UTR 0.35 TCGA-G2-A2ES-01 1 161201118 161201118 C A NR1I3 Splice_Site p.X232_splice 0.18 TCGA-G2-A2ES-01 1 162467686 162467686 C T UHMK1 5'UTR 0.27 TCGA-G2-A2ES-01 1 1721920 1721920 C T GNB1 Missense_Mutation p.D205N 0.34 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 1 172546905 172546905 T - SUCO Frame_Shift_Del p.E430Sfs*14 0.21 TCGA-G2-A2ES-01 1 174983712 174983712 T A MRPS14 3'UTR 0.19 TCGA-G2-A2ES-01 1 175086247 175086247 G A TNN Silent p.L764L 0.22 TCGA-G2-A2ES-01 1 179989993 179989993 C A CEP350 Silent p.I1028I 0.28 TCGA-G2-A2ES-01 1 182845362 182845362 A G DHX9 Missense_Mutation p.T665A 0.25 tolerated(1) benign(0.003) TCGA-G2-A2ES-01 1 186648486 186648486 C A PTGS2 Missense_Mutation p.R46L 0.29 tolerated(0.07) benign(0.013) TCGA-G2-A2ES-01 1 19447716 19447716 T C UBR4 Missense_Mutation p.S3370G 0.24 possibly_damaging(0.775) TCGA-G2-A2ES-01 1 196712595 196712595 G A CFH Silent p.V1049V 0.15 TCGA-G2-A2ES-01 1 203276382 203276382 G C BTG2 Missense_Mutation p.S98T 0.16 tolerated(0.07) benign(0.014) TCGA-G2-A2ES-01 1 203839114 203839114 G A SNRPE 3'UTR 0.25 TCGA-G2-A2ES-01 1 205312535 205312535 G C KLHDC8A Silent p.P66P 0.29 TCGA-G2-A2ES-01 1 206628299 206628299 G A SRGAP2 Silent p.V726V 0.28 TCGA-G2-A2ES-01 1 206628307 206628307 G T SRGAP2 Missense_Mutation p.R729I 0.29 deleterious(0.01) benign(0.118) TCGA-G2-A2ES-01 1 21800042 21800042 C A NBPF3 Missense_Mutation p.H302N 0.24 deleterious(0.01) benign(0.403) TCGA-G2-A2ES-01 1 22074634 22074634 T A USP48 Missense_Mutation p.D302V 0.31 deleterious(0.02) probably_damaging(0.919) TCGA-G2-A2ES-01 1 22169324 22169324 C A HSPG2 Missense_Mutation p.G2950V 0.23 probably_damaging(0.993) TCGA-G2-A2ES-01 1 223285245 223285245 C T TLR5 Missense_Mutation p.D377N 0.20 tolerated(0.38) benign(0.003) TCGA-G2-A2ES-01 1 228362831 228362831 G C IBA57 Missense_Mutation p.E230Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-G2-A2ES-01 1 231342533 231342533 G A TRIM67 Missense_Mutation p.D606N 0.30 deleterious(0.01) benign(0.305) TCGA-G2-A2ES-01 1 24401849 24401849 G T MYOM3 Missense_Mutation p.L940M 0.26 tolerated(0.07) benign(0.212) TCGA-G2-A2ES-01 1 24469527 24469527 C T IL22RA1 Intron 0.24 TCGA-G2-A2ES-01 1 246810471 246810471 G T CNST Missense_Mutation p.S323I 0.22 tolerated(0.08) benign(0.33) TCGA-G2-A2ES-01 1 247267373 247267373 C T ZNF669 Silent p.R43R 0.31 TCGA-G2-A2ES-01 1 247752379 247752379 G A OR2G2 Missense_Mutation p.A240T 0.23 deleterious(0.01) benign(0.367) TCGA-G2-A2ES-01 1 247769738 247769738 C T OR2G3 Missense_Mutation p.T284I 0.20 tolerated(0.27) benign(0.001) TCGA-G2-A2ES-01 1 248004726 248004726 A T OR11L1 Missense_Mutation p.L158Q 0.23 deleterious(0.01) probably_damaging(0.961) TCGA-G2-A2ES-01 1 248020677 248020677 C T TRIM58 Silent p.F43F 0.33 TCGA-G2-A2ES-01 1 25810726 25810726 T G TMEM57 Missense_Mutation p.M425R 0.18 deleterious(0) benign(0.082) TCGA-G2-A2ES-01 1 26786621 26786621 C G DHDDS Missense_Mutation p.H251D 0.24 deleterious(0.02) benign(0.009) TCGA-G2-A2ES-01 1 26885394 26885394 G T RPS6KA1 Missense_Mutation p.R403L 0.30 tolerated(0.3) benign(0) TCGA-G2-A2ES-01 1 28241008 28241008 G A RPA2 5'UTR 0.32 TCGA-G2-A2ES-01 1 3548889 3548889 A G WRAP73 Silent p.S312S 0.24 TCGA-G2-A2ES-01 1 37267622 37267622 C T GRIK3 Missense_Mutation p.D864N 0.26 tolerated(0.15) benign(0.21) TCGA-G2-A2ES-01 1 37941247 37941247 G T ZC3H12A Missense_Mutation p.M50I 0.20 tolerated(0.07) benign(0.297) TCGA-G2-A2ES-01 1 39340130 39340130 C G GJA9 3'UTR 0.24 TCGA-G2-A2ES-01 1 40105218 40105218 C G HEYL Missense_Mutation p.S27T 0.28 deleterious(0.03) benign(0.011) TCGA-G2-A2ES-01 1 40525127 40525127 A C CAP1 Missense_Mutation p.K37Q 0.27 tolerated(0.57) benign(0.002) TCGA-G2-A2ES-01 1 41493986 41493986 G T SCMH1 Silent p.I621I 0.26 TCGA-G2-A2ES-01 1 43636436 43636436 C T EBNA1BP2 Silent p.Q201Q 0.21 TCGA-G2-A2ES-01 1 44461475 44461475 G A CCDC24 Missense_Mutation p.M216I 0.23 tolerated(0.13) benign(0.028) TCGA-G2-A2ES-01 1 44461719 44461719 C T CCDC24 Nonsense_Mutation p.R271* 0.34 TCGA-G2-A2ES-01 1 46072194 46072194 C A NASP Missense_Mutation p.H114N 0.24 tolerated(0.16) possibly_damaging(0.501) TCGA-G2-A2ES-01 1 50661283 50661283 G A ELAVL4 Missense_Mutation p.E204K 0.28 deleterious(0) possibly_damaging(0.858) TCGA-G2-A2ES-01 1 52874277 52874277 G C PRPF38A Silent p.L109L 0.22 TCGA-G2-A2ES-01 1 60309252 60309252 T C HOOK1 Missense_Mutation p.L257S 0.23 deleterious(0.01) possibly_damaging(0.658) TCGA-G2-A2ES-01 1 68591908 68591908 C G WLS Intron 0.35 TCGA-G2-A2ES-01 1 70504742 70504742 G A LRRC7 Missense_Mutation p.E1041K 0.20 tolerated(0.43) benign(0.345) TCGA-G2-A2ES-01 1 74670826 74670826 T C FPGT Silent p.Y365Y 0.27 TCGA-G2-A2ES-01 1 77509952 77509952 C G ST6GALNAC5 Missense_Mutation p.R109G 0.18 benign(0.001) TCGA-G2-A2ES-01 1 7806147 7806147 A G CAMTA1 Missense_Mutation p.Y1538C 0.24 deleterious(0) probably_damaging(0.998) TCGA-G2-A2ES-01 1 78177467 78177467 T A USP33 Nonsense_Mutation p.K822* 0.26 TCGA-G2-A2ES-01 1 78470657 78470657 C T DNAJB4 5'UTR 0.21 TCGA-G2-A2ES-01 1 8075288 8075288 T C ERRFI1 Intron 0.30 TCGA-G2-A2ES-01 1 86048789 86048789 C A CYR61 3'UTR 0.28 TCGA-G2-A2ES-01 20 10639244 10639244 T A JAG1 Missense_Mutation p.D189V 0.29 deleterious(0) benign(0.343) TCGA-G2-A2ES-01 20 1286301 1286301 C G SNPH Nonsense_Mutation p.S363* 0.21 TCGA-G2-A2ES-01 20 2413168 2413168 C A TGM6 Nonsense_Mutation p.S667* 0.26 TCGA-G2-A2ES-01 20 279103 279103 G T ZCCHC3 Silent p.G292G 0.24 TCGA-G2-A2ES-01 20 3052881 3052881 G A OXT Silent p.G93G 0.28 TCGA-G2-A2ES-01 20 30602794 30602794 C T CCM2L Missense_Mutation p.H40Y 0.29 deleterious(0) possibly_damaging(0.813) TCGA-G2-A2ES-01 20 30898454 30898483 TATCGGGACTCAAAGCTTACCAGGCTCCTC - KIF3B In_Frame_Del p.Y292_L301del 0.20 TCGA-G2-A2ES-01 20 33057885 33057897 ACTTCAAAGCAAA - ITCH Frame_Shift_Del p.D527Gfs*18 0.19 TCGA-G2-A2ES-01 20 3766484 3766484 C T CENPB Missense_Mutation p.G216E 0.21 tolerated(0.19) unknown(0) TCGA-G2-A2ES-01 20 419827 419827 C T TBC1D20 Missense_Mutation p.R294K 0.20 tolerated(0.35) benign(0.005) TCGA-G2-A2ES-01 20 45355551 45355551 G A SLC2A10 Missense_Mutation p.R446K 0.25 deleterious(0.03) probably_damaging(0.983) TCGA-G2-A2ES-01 20 57485061 57485061 G A GNAS Missense_Mutation p.E942K 0.28 deleterious(0.01) probably_damaging(0.966) TCGA-G2-A2ES-01 20 62187700 62187708 GTTCGTCAC - C20orf195 In_Frame_Del p.W228_T231delinsC 0.38 TCGA-G2-A2ES-01 20 62229137 62229137 G A GMEB2 Missense_Mutation p.A145V 0.32 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 21 31538933 31538933 C T CLDN17 Translation_Start_Site p.M1? 0.20 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 21 34131446 34131446 A C PAXBP1 Missense_Mutation p.F443C 0.29 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 21 40574387 40574387 C T BRWD1 Silent p.R1483R 0.33 TCGA-G2-A2ES-01 21 42780076 42780076 G A MX2 Silent p.K688K 0.44 TCGA-G2-A2ES-01 21 45217279 45217279 C G RRP1 Intron 0.17 TCGA-G2-A2ES-01 21 46012274 46012274 G A KRTAP10-6 Missense_Mutation p.S31F 0.26 deleterious(0) unknown(0) TCGA-G2-A2ES-01 21 47769713 47769713 C T PCNT Silent p.S441S 0.38 TCGA-G2-A2ES-01 22 17072837 17072837 G T CCT8L2 Missense_Mutation p.R202S 0.19 tolerated(0.16) benign(0.196) TCGA-G2-A2ES-01 22 18185037 18185037 A C BCL2L13 Missense_Mutation p.Q162P 0.18 tolerated(0.07) possibly_damaging(0.664) TCGA-G2-A2ES-01 22 23162170 23162170 C T IGLV3-9 Missense_Mutation p.T88M 0.22 tolerated(0.09) possibly_damaging(0.488) TCGA-G2-A2ES-01 22 23162216 23162216 C G IGLV3-9 Missense_Mutation p.D103E 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-G2-A2ES-01 22 29445244 29445244 C G ZNRF3 Missense_Mutation p.Q359E 0.23 tolerated(0.12) benign(0.265) TCGA-G2-A2ES-01 22 31042720 31042720 C G SLC35E4 Missense_Mutation p.S252C 0.20 tolerated(0.16) benign(0.016) TCGA-G2-A2ES-01 22 38536057 38536057 A T PLA2G6 Missense_Mutation p.N243K 0.19 tolerated(0.06) possibly_damaging(0.643) TCGA-G2-A2ES-01 22 42078442 42078442 C T NHP2L1 5'UTR 0.31 TCGA-G2-A2ES-01 22 43570554 43570554 C T TTLL12 Missense_Mutation p.E329K 0.23 tolerated(0.06) benign(0.087) TCGA-G2-A2ES-01 2 113404397 113404433 CTCCAGAGAATGGCAACGCTGATTACCAGTACTACAG - SLC20A1 Missense_Mutation 0.43 TCGA-G2-A2ES-01 2 131127379 131127379 C T PTPN18 Silent p.T175T 0.55 TCGA-G2-A2ES-01 2 152980445 152980445 T C STAM2 Missense_Mutation p.Y395C 0.58 deleterious(0.01) probably_damaging(0.966) TCGA-G2-A2ES-01 2 155555300 155555300 C T KCNJ3 Nonsense_Mutation p.R5* 0.49 TCGA-G2-A2ES-01 2 160245986 160245986 C A BAZ2B Missense_Mutation p.R1029L 0.24 benign(0.09) TCGA-G2-A2ES-01 2 178936328 178936328 C A PDE11A Missense_Mutation p.Q279H 0.52 tolerated(0.15) possibly_damaging(0.796) TCGA-G2-A2ES-01 2 204360028 204360028 T G RAPH1 Missense_Mutation p.S17R 0.52 probably_damaging(0.997) TCGA-G2-A2ES-01 2 207041473 207041473 G C GPR1 Missense_Mutation p.L167V 0.46 tolerated(0.52) benign(0.093) TCGA-G2-A2ES-01 2 232645907 232645919 GCAGCCCGGCTTG - PDE6D 5'UTR 0.48 TCGA-G2-A2ES-01 2 27821012 27821012 G A ZNF512 Silent p.S56S 0.25 TCGA-G2-A2ES-01 2 28824168 28824168 G T PLB1 Missense_Mutation p.G859V 0.47 tolerated(0.1) benign(0.363) TCGA-G2-A2ES-01 2 32626450 32626450 G A BIRC6 Missense_Mutation p.M418I 0.52 possibly_damaging(0.885) TCGA-G2-A2ES-01 2 32738069 32738069 G T BIRC6 Missense_Mutation p.M3472I 0.52 benign(0.001) TCGA-G2-A2ES-01 2 32832589 32832589 G T BIRC6 Missense_Mutation p.R4713L 0.56 possibly_damaging(0.89) TCGA-G2-A2ES-01 2 43989514 43989514 A C PLEKHH2 Missense_Mutation p.L1381F 0.61 deleterious(0.01) probably_damaging(0.985) TCGA-G2-A2ES-01 2 61724137 61724137 C T XPO1 Silent p.L255L 0.65 TCGA-G2-A2ES-01 2 86325857 86325857 A C POLR1A Silent p.S103S 0.62 TCGA-G2-A2ES-01 2 97483118 97483118 G A CNNM3 Silent p.L368L 0.53 TCGA-G2-A2ES-01 3 100103344 100103344 C T TOMM70A Silent p.E238E 0.27 TCGA-G2-A2ES-01 3 100961559 100961559 C T IMPG2 Missense_Mutation p.D999N 0.30 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 3 101395446 101395446 C T ZBTB11 Intron 0.24 TCGA-G2-A2ES-01 3 111697910 111697910 T G ABHD10 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) unknown(0) TCGA-G2-A2ES-01 3 122437771 122437771 C T PARP14 Silent p.H1591H 0.17 TCGA-G2-A2ES-01 3 123367843 123367843 A T MYLK Missense_Mutation p.Y1464N 0.19 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 3 135721464 135721464 A T PPP2R3A Missense_Mutation p.N375I 0.26 tolerated_low_confidence(0.07) benign(0.281) TCGA-G2-A2ES-01 3 138024902 138024902 C G NME9 Missense_Mutation p.E133Q 0.24 deleterious(0) probably_damaging(0.94) TCGA-G2-A2ES-01 3 140397361 140397361 G A TRIM42 Missense_Mutation p.R97H 0.34 deleterious(0.01) benign(0.035) TCGA-G2-A2ES-01 3 142140317 142140317 C T XRN1 Splice_Site p.X345_splice 0.12 TCGA-G2-A2ES-01 3 145796998 145796998 C T PLOD2 Missense_Mutation p.G469R 0.35 deleterious(0.01) probably_damaging(0.967) TCGA-G2-A2ES-01 3 148460024 148460024 T C AGTR1 3'UTR 0.42 TCGA-G2-A2ES-01 3 148863304 148863304 C T HPS3 Silent p.L378L 0.32 TCGA-G2-A2ES-01 3 151102873 151102873 C T MED12L Missense_Mutation p.P1626L 0.24 deleterious(0) probably_damaging(0.998) TCGA-G2-A2ES-01 3 153847391 153847391 G A ARHGEF26 Silent p.K384K 0.30 TCGA-G2-A2ES-01 3 157154611 157154611 T C PTX3 5'UTR 0.27 TCGA-G2-A2ES-01 3 164907052 164907052 C G SLITRK3 Missense_Mutation p.A523P 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-G2-A2ES-01 3 180372711 180372711 C G CCDC39 Missense_Mutation p.E257Q 0.20 deleterious(0.04) possibly_damaging(0.688) TCGA-G2-A2ES-01 3 180397161 180397161 C A CCDC39 Missense_Mutation p.S3I 0.26 deleterious(0.02) benign(0.209) TCGA-G2-A2ES-01 3 191098675 191098675 G A CCDC50 Missense_Mutation p.R399Q 0.37 deleterious(0) possibly_damaging(0.754) TCGA-G2-A2ES-01 3 195935333 195935355 GCCCGAGTAGAGGCACAGGGACA - ZDHHC19 Frame_Shift_Del p.L162Rfs*93 0.64 TCGA-G2-A2ES-01 3 197476889 197476889 C T FYTTD1 Missense_Mutation p.S16L 0.55 tolerated_low_confidence(0.06) benign(0.058) TCGA-G2-A2ES-01 3 24018855 24018855 G T NR1D2 Missense_Mutation p.R562L 0.31 deleterious(0) benign(0.169) TCGA-G2-A2ES-01 3 30713456 30713457 - C TGFBR2 Frame_Shift_Ins p.K287Qfs*11 0.36 TCGA-G2-A2ES-01 3 367669 367669 A T CHL1 Missense_Mutation p.Q40L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A2ES-01 3 3886380 3886380 A T LRRN1 Missense_Mutation p.M19L 0.31 tolerated(0.75) benign(0) TCGA-G2-A2ES-01 3 3886395 3886395 G A LRRN1 Missense_Mutation p.E24K 0.34 tolerated(0.92) benign(0.011) TCGA-G2-A2ES-01 3 38962614 38962614 T G SCN11A Missense_Mutation p.K282T 0.39 deleterious(0) possibly_damaging(0.568) TCGA-G2-A2ES-01 3 47324425 47324425 G A KIF9 5'Flank 0.54 TCGA-G2-A2ES-01 3 48618755 48618755 C T COL7A1 Missense_Mutation p.G1613R 0.35 unknown(0) TCGA-G2-A2ES-01 3 52433606 52433607 - GGTGC DNAH1 Frame_Shift_Ins p.Y4165Gfs*60 0.46 TCGA-G2-A2ES-01 3 57107939 57107939 C T SPATA12 Nonsense_Mutation p.Q73* 0.43 TCGA-G2-A2ES-01 3 58255096 58255096 G A ABHD6 Missense_Mutation p.E109K 0.32 tolerated(0.11) probably_damaging(0.935) TCGA-G2-A2ES-01 3 58856020 58856020 C T C3orf67 Missense_Mutation p.R119K 0.41 tolerated(0.07) benign(0.019) TCGA-G2-A2ES-01 3 69158223 69158223 C T LMOD3 3'UTR 0.19 TCGA-G2-A2ES-01 3 97806060 97806060 T G OR5AC2 Missense_Mutation p.V15G 0.28 deleterious(0) benign(0.008) TCGA-G2-A2ES-01 4 102267947 102267947 C T PPP3CA Missense_Mutation p.E3K 0.22 tolerated_low_confidence(0.19) benign(0.169) TCGA-G2-A2ES-01 4 104066984 104066984 A T CENPE Splice_Site p.X1471_splice 0.25 TCGA-G2-A2ES-01 4 111539518 111539518 G A PITX2 Silent p.L246L 0.27 TCGA-G2-A2ES-01 4 114900044 114900070 TGCGGGCGCACACATGCACCCAACAGA - ARSJ 5'UTR 0.39 TCGA-G2-A2ES-01 4 118006550 118006550 G A TRAM1L1 5'UTR 0.28 TCGA-G2-A2ES-01 4 121843681 121843681 C T PRDM5 Missense_Mutation p.R28K 0.29 tolerated(0.14) benign(0.118) TCGA-G2-A2ES-01 4 122250851 122250851 T A QRFPR Missense_Mutation p.Y305F 0.37 tolerated(0.06) benign(0.088) TCGA-G2-A2ES-01 4 126370445 126370445 A C FAT4 Missense_Mutation p.K2758N 0.20 benign(0.008) TCGA-G2-A2ES-01 4 128751844 128751844 T C HSPA4L Missense_Mutation p.C740R 0.35 tolerated(0.2) benign(0.003) TCGA-G2-A2ES-01 4 146046206 146046206 G A ABCE1 Missense_Mutation p.D569N 0.17 deleterious(0) probably_damaging(0.961) TCGA-G2-A2ES-01 4 151223937 151223937 C T LRBA Silent p.L2630L 0.20 TCGA-G2-A2ES-01 4 152043166 152043166 G C SH3D19 3'UTR 0.20 TCGA-G2-A2ES-01 4 153245449 153245450 - G FBXW7 Frame_Shift_Ins p.Q581Pfs*24 0.25 TCGA-G2-A2ES-01 4 153250906 153250906 G T FBXW7 Missense_Mutation p.T385K 0.17 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 4 153273634 153273634 C T FBXW7 Intron 0.17 TCGA-G2-A2ES-01 4 154243942 154243942 G A TRIM2 Missense_Mutation p.R642Q 0.30 deleterious(0.02) benign(0.408) TCGA-G2-A2ES-01 4 154243969 154243969 G A TRIM2 Splice_Site p.X651_splice 0.42 TCGA-G2-A2ES-01 4 155749131 155749131 G A RBM46 Missense_Mutation p.G505D 0.24 tolerated_low_confidence(0.25) benign(0.004) TCGA-G2-A2ES-01 4 15720599 15720599 C T BST1 Silent p.S258S 0.24 TCGA-G2-A2ES-01 4 164272420 164272420 G A NPY5R Missense_Mutation p.G332E 0.18 deleterious(0.03) possibly_damaging(0.908) TCGA-G2-A2ES-01 4 169819719 169819719 G A PALLD Missense_Mutation p.E776K 0.17 deleterious(0) benign(0.223) TCGA-G2-A2ES-01 4 185012225 185012225 G C ENPP6 3'UTR 0.29 TCGA-G2-A2ES-01 4 186324770 186324770 C T UFSP2 Missense_Mutation p.G401R 0.22 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 4 1957573 1957573 A G WHSC1 Missense_Mutation p.Y891C 0.36 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 4 3475151 3475151 T C DOK7 Missense_Mutation p.V40A 0.13 tolerated(0.26) benign(0.001) TCGA-G2-A2ES-01 4 39850583 39850583 T C PDS5A Missense_Mutation p.Y1076C 0.19 deleterious(0) probably_damaging(0.967) TCGA-G2-A2ES-01 4 44709782 44709782 C T GNPDA2 Silent p.V252V 0.33 TCGA-G2-A2ES-01 4 48578237 48578237 C T FRYL Missense_Mutation p.S844N 0.24 tolerated(0.29) possibly_damaging(0.464) TCGA-G2-A2ES-01 4 57215543 57215543 G T AASDH Missense_Mutation p.H792N 0.21 deleterious(0.04) benign(0.078) TCGA-G2-A2ES-01 4 57842717 57842743 GCCCACTAAGTAGACGTCCCCACGGTA - NOA1 In_Frame_Del p.Y337_G345del 0.20 TCGA-G2-A2ES-01 4 682809 682809 G A MFSD7 Silent p.I36I 0.40 TCGA-G2-A2ES-01 4 69196015 69196015 G A YTHDC1 Missense_Mutation p.T379M 0.32 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 4 71459051 71459051 T C AMBN Missense_Mutation p.L8P 0.13 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-G2-A2ES-01 4 71459067 71459067 C T AMBN Silent p.D13D 0.16 TCGA-G2-A2ES-01 4 79367924 79367924 G A FRAS1 Missense_Mutation p.R1967K 0.32 benign(0.002) TCGA-G2-A2ES-01 4 81123531 81123531 C T PRDM8 Silent p.I305I 0.32 TCGA-G2-A2ES-01 4 83280703 83280703 G A HNRNPD Missense_Mutation p.T127I 0.24 tolerated(0.14) possibly_damaging(0.739) TCGA-G2-A2ES-01 4 83778203 83778203 T C SEC31A Missense_Mutation p.M595V 0.26 deleterious(0.01) benign(0.349) TCGA-G2-A2ES-01 4 84364763 84364763 C T HELQ Silent p.T490T 0.32 TCGA-G2-A2ES-01 4 85687004 85687004 T A WDFY3 Missense_Mutation p.Q1716L 0.21 tolerated(0.18) benign(0.01) TCGA-G2-A2ES-01 4 87770173 87770173 G A SLC10A6 Silent p.L32L 0.27 TCGA-G2-A2ES-01 4 89649913 89649913 C T FAM13A Intron 0.24 TCGA-G2-A2ES-01 5 110097170 110097170 A T SLC25A46 Silent p.P315P 0.28 TCGA-G2-A2ES-01 5 111506035 111506035 C T EPB41L4A Missense_Mutation p.E568K 0.21 deleterious(0.01) benign(0.273) TCGA-G2-A2ES-01 5 112227775 112227775 C T ZRSR1 Nonsense_Mutation p.Q147* 0.20 TCGA-G2-A2ES-01 5 112903525 112903525 C T YTHDC2 Nonsense_Mutation p.Q1075* 0.35 TCGA-G2-A2ES-01 5 130980457 130980457 C A FNIP1 Splice_Site p.X1141_splice 0.25 TCGA-G2-A2ES-01 5 131310491 131310491 G T ACSL6 Intron 0.29 TCGA-G2-A2ES-01 5 131630518 131630518 G A SLC22A4 Missense_Mutation p.R70Q 0.36 tolerated(0.23) benign(0.001) TCGA-G2-A2ES-01 5 132197956 132197956 A G GDF9 Silent p.S230S 0.33 TCGA-G2-A2ES-01 5 132223808 132223808 T A AFF4 Missense_Mutation p.K926M 0.25 deleterious(0) probably_damaging(0.997) TCGA-G2-A2ES-01 5 133295523 133295523 G A C5orf15 Missense_Mutation p.P110S 0.20 tolerated(0.67) benign(0.001) TCGA-G2-A2ES-01 5 137622194 137622194 G A CDC25C Silent p.G384G 0.28 TCGA-G2-A2ES-01 5 140209996 140209996 C T PCDHA6 Missense_Mutation p.P774S 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G2-A2ES-01 5 150701700 150701700 C T SLC36A2 Missense_Mutation p.E363K 0.27 deleterious(0.04) possibly_damaging(0.517) TCGA-G2-A2ES-01 5 150931089 150931089 C T FAT2 Missense_Mutation p.R1412K 0.33 benign(0.009) TCGA-G2-A2ES-01 5 159849713 159849715 CAG - PTTG1 Splice_Site p.X31_splice 0.22 TCGA-G2-A2ES-01 5 172518250 172518250 A T CREBRF Missense_Mutation p.E356D 0.29 tolerated(0.11) benign(0.001) TCGA-G2-A2ES-01 5 32059441 32059441 C A PDZD2 Missense_Mutation p.A766D 0.28 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 5 32276767 32276787 CTATGCTAACATGACAGTTAC - MTMR12 Splice_Site p.X48_splice 0.16 TCGA-G2-A2ES-01 5 34821857 34821857 A G RAI14 Missense_Mutation p.I342V 0.17 tolerated(1) benign(0.002) TCGA-G2-A2ES-01 5 37059268 37059268 G A NIPBL Splice_Site p.X2562_splice 0.18 TCGA-G2-A2ES-01 5 39341658 39341658 C T C9 Missense_Mutation p.G110S 0.20 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.28 tolerated(0.25) benign(0.064) TCGA-G2-A2ES-01 5 50090057 50090057 G A PARP8 Missense_Mutation p.V252I 0.21 tolerated(0.62) benign(0.016) TCGA-G2-A2ES-01 5 52096179 52096179 G A PELO 5'UTR 0.22 TCGA-G2-A2ES-01 5 52394348 52394348 T C MOCS2 3'UTR 0.32 TCGA-G2-A2ES-01 5 52394398 52394398 A G MOCS2 3'UTR 0.35 TCGA-G2-A2ES-01 5 54436170 54436170 G C CDC20B Silent p.L184L 0.32 TCGA-G2-A2ES-01 5 78280775 78280775 G A ARSB Silent p.L99L 0.33 TCGA-G2-A2ES-01 5 78407658 78407658 T C BHMT 5'UTR 0.27 TCGA-G2-A2ES-01 5 7867567 7867567 T C FASTKD3 Silent p.K210K 0.30 TCGA-G2-A2ES-01 5 79733327 79733327 G T ZFYVE16 Missense_Mutation p.V275F 0.27 deleterious(0.05) benign(0.05) TCGA-G2-A2ES-01 5 90086879 90086879 C A GPR98 Missense_Mutation p.L4745M 0.29 benign(0.084) TCGA-G2-A2ES-01 5 94245027 94245027 T C MCTP1 Silent p.E527E 0.19 TCGA-G2-A2ES-01 5 98240643 98240643 T G CHD1 Missense_Mutation p.E71D 0.40 tolerated_low_confidence(0.16) benign(0.018) TCGA-G2-A2ES-01 6 109850208 109850208 A G AK9 Intron 0.46 TCGA-G2-A2ES-01 6 132021851 132021851 C T OR2A4 Missense_Mutation p.E231K 0.27 deleterious(0.04) benign(0.289) TCGA-G2-A2ES-01 6 139164270 139164270 C T ECT2L Missense_Mutation p.T166M 0.43 deleterious(0) probably_damaging(0.983) TCGA-G2-A2ES-01 6 151857488 151857488 G T CCDC170 Silent p.T31T 0.42 TCGA-G2-A2ES-01 6 15524685 15524685 C T DTNBP1 Intron 0.28 TCGA-G2-A2ES-01 6 160953592 160953592 G C LPA Missense_Mutation p.H1978D 0.32 tolerated(0.24) benign(0.107) TCGA-G2-A2ES-01 6 26104492 26104492 A G HIST1H4C 3'UTR 0.60 TCGA-G2-A2ES-01 6 29080151 29080151 C A OR2J3 Missense_Mutation p.H162N 0.51 deleterious(0.01) possibly_damaging(0.465) TCGA-G2-A2ES-01 6 35436849 35436849 T G RPL10A Intron 0.56 TCGA-G2-A2ES-01 6 35438423 35438423 C T RPL10A Missense_Mutation p.H184Y 0.45 tolerated(0.57) benign(0.008) TCGA-G2-A2ES-01 6 38942237 38942237 G C DNAH8 Missense_Mutation p.D4039H 0.29 probably_damaging(0.951) TCGA-G2-A2ES-01 6 39507798 39507798 A T KIF6 Missense_Mutation p.S542R 0.51 tolerated(0.23) benign(0.14) TCGA-G2-A2ES-01 6 43237400 43237400 C T TTBK1 Intron 0.59 TCGA-G2-A2ES-01 6 56471201 56471201 G A DST Intron 0.59 TCGA-G2-A2ES-01 6 70386122 70386122 C T LMBRD1 Silent p.K517K 0.27 TCGA-G2-A2ES-01 7 100606746 100606746 G T MUC3A Missense_Mutation p.K612N 0.38 deleterious(0.04) probably_damaging(0.923) TCGA-G2-A2ES-01 7 100678716 100678716 C G MUC17 Missense_Mutation p.T1340R 0.27 unknown(0) TCGA-G2-A2ES-01 7 105189056 105189056 T A RINT1 Missense_Mutation p.S299T 0.30 tolerated(0.55) benign(0.004) TCGA-G2-A2ES-01 7 106508023 106508023 A G PIK3CG Missense_Mutation p.Y6C 0.25 tolerated_low_confidence(0.17) benign(0.078) TCGA-G2-A2ES-01 7 110763553 110763553 C G LRRN3 Missense_Mutation p.S242C 0.29 deleterious(0) probably_damaging(1) TCGA-G2-A2ES-01 7 120610799 120610799 A T ING3 Missense_Mutation p.L322F 0.26 tolerated(0.07) benign(0.444) TCGA-G2-A2ES-01 7 12728009 12728009 G C ARL4A Missense_Mutation p.E44Q 0.21 tolerated(0.31) probably_damaging(0.998) TCGA-G2-A2ES-01 7 132069999 132069999 T C PLXNA4 Intron 0.25 TCGA-G2-A2ES-01 7 138312175 138312175 G A SVOPL Silent p.F367F 0.20 TCGA-G2-A2ES-01 7 139025978 139025978 C T C7orf55 5'UTR 0.40 TCGA-G2-A2ES-01 7 141427156 141427156 G A WEE2 Missense_Mutation p.R482K 0.24 tolerated(1) benign(0.012) TCGA-G2-A2ES-01 7 143793100 143793100 A G OR2A12 Silent p.L300L 0.23 TCGA-G2-A2ES-01 7 151864230 151864230 C T KMT2C Splice_Site p.X3250_splice 0.24 TCGA-G2-A2ES-01 7 154739621 154739621 G T PAXIP1 Missense_Mutation p.L972I 0.23 deleterious(0.01) unknown(0) TCGA-G2-A2ES-01 7 156745289 156745289 A G NOM1 Missense_Mutation p.N370S 0.26 deleterious(0) probably_damaging(0.988) TCGA-G2-A2ES-01 7 19184952 19184952 T C FERD3L Missense_Mutation p.T12A 0.27 tolerated(0.31) benign(0.004) TCGA-G2-A2ES-01 7 23286429 23286429 A G GPNMB 5'UTR 0.23 TCGA-G2-A2ES-01 7 23296615 23296615 G A GPNMB Missense_Mutation p.D158N 0.21 deleterious(0.02) probably_damaging(0.982) TCGA-G2-A2ES-01 7 23313138 23313138 A G GPNMB Splice_Site p.X489_splice 0.32 TCGA-G2-A2ES-01 7 23547040 23547040 G A TRA2A Missense_Mutation p.H214Y 0.29 tolerated(0.84) benign(0.006) TCGA-G2-A2ES-01 7 27209216 27209230 CCGCCGCCGCCGCCT - RP1-170O19.20 Intron 0.34 TCGA-G2-A2ES-01 7 27222475 27222475 C T HOXA11 Missense_Mutation p.M294I 0.26 deleterious(0) probably_damaging(0.979) TCGA-G2-A2ES-01 7 28725735 28725735 T G CREB5 Intron 0.20 TCGA-G2-A2ES-01 7 30197062 30197062 G A MTURN Silent p.G98G 0.24 TCGA-G2-A2ES-01 7 37272761 37272761 A T ELMO1 Missense_Mutation p.V163D 0.32 deleterious(0) possibly_damaging(0.529) TCGA-G2-A2ES-01 7 42964312 42964312 C T PSMA2 Silent p.Q112Q 0.28 TCGA-G2-A2ES-01 7 5354756 5354756 G C TNRC18 Missense_Mutation p.L2296V 0.29 benign(0.364) TCGA-G2-A2ES-01 7 6630079 6630079 G A C7orf26 Silent p.V55V 0.33 TCGA-G2-A2ES-01 7 73112020 73112020 G A WBSCR22 Missense_Mutation p.G280S 0.30 deleterious(0) probably_damaging(0.974) TCGA-G2-A2ES-01 7 90042400 90042400 G A CLDN12 Missense_Mutation p.G137E 0.22 deleterious(0) probably_damaging(0.955) TCGA-G2-A2ES-01 7 90895380 90895380 G A FZD1 Silent p.Q395Q 0.25 TCGA-G2-A2ES-01 7 91694694 91694694 G C AKAP9 Missense_Mutation p.E2043Q 0.20 probably_damaging(0.998) TCGA-G2-A2ES-01 7 91695741 91695741 G A AKAP9 Missense_Mutation p.E2071K 0.21 probably_damaging(0.999) TCGA-G2-A2ES-01 7 91981884 91981884 G T ANKIB1 Missense_Mutation p.G442V 0.27 deleterious(0.03) benign(0.405) TCGA-G2-A2ES-01 7 92027739 92027739 T G ANKIB1 Missense_Mutation p.L916V 0.42 deleterious_low_confidence(0) benign(0.414) TCGA-G2-A2ES-01 7 92143223 92143223 G A PEX1 Missense_Mutation p.T433I 0.29 deleterious(0.04) benign(0.14) TCGA-G2-A2ES-01 7 96746924 96746924 G A ACN9 5'UTR 0.12 TCGA-G2-A2ES-01 7 99169382 99169382 A G ZNF655 Missense_Mutation p.K70E 0.21 tolerated(0.49) unknown(0) TCGA-G2-A2ES-01 8 101076156 101076156 T C RGS22 Silent p.V280V 0.05 TCGA-G2-A2ES-01 8 110460573 110460573 T C PKHD1L1 Missense_Mutation p.V1993A 0.13 tolerated(0.18) benign(0.012) TCGA-G2-A2ES-01 8 125555358 125555358 G A NDUFB9 Missense_Mutation p.M44I 0.14 deleterious(0.02) benign(0.001) TCGA-G2-A2ES-01 8 13357474 13357474 A G DLC1 Missense_Mutation p.V36A 0.37 tolerated_low_confidence(0.72) benign(0.001) TCGA-G2-A2ES-01 8 142148141 142148141 G A DENND3 Missense_Mutation p.E56K 0.19 tolerated(0.07) possibly_damaging(0.685) TCGA-G2-A2ES-01 8 144462009 144462009 A G RHPN1 Missense_Mutation p.E319G 0.20 tolerated(0.23) benign(0.311) TCGA-G2-A2ES-01 8 144668447 144668447 C T EEF1D Missense_Mutation p.S410N 0.42 tolerated(0.33) benign(0.285) TCGA-G2-A2ES-01 8 144680461 144680461 G A TIGD5 Missense_Mutation p.A130T 0.43 tolerated(0.67) benign(0.019) TCGA-G2-A2ES-01 8 145660258 145660258 C T TONSL Silent p.V1007V 0.16 TCGA-G2-A2ES-01 8 145697774 145697774 C T KIFC2 Silent p.R546R 0.29 TCGA-G2-A2ES-01 8 145738372 145738372 C T RECQL4 Silent p.E871E 0.33 TCGA-G2-A2ES-01 8 17396424 17396424 T G SLC7A2 Missense_Mutation p.F31V 0.14 tolerated_low_confidence(0.22) benign(0) TCGA-G2-A2ES-01 8 18662314 18662314 C A PSD3 Missense_Mutation p.G577C 0.20 deleterious(0.01) benign(0.424) TCGA-G2-A2ES-01 8 19190582 19190582 G A SH2D4A Missense_Mutation p.E100K 0.23 deleterious(0.01) benign(0.21) TCGA-G2-A2ES-01 8 22442884 22442884 C G PDLIM2 Missense_Mutation p.S421C 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-G2-A2ES-01 8 23056919 23056919 C T TNFRSF10A Missense_Mutation p.E292K 0.39 tolerated(1) benign(0.024) TCGA-G2-A2ES-01 8 23112797 23112797 C T CHMP7 Missense_Mutation p.S170L 0.21 deleterious(0.03) benign(0.063) TCGA-G2-A2ES-01 8 24775841 24775841 G A NEFM Missense_Mutation p.E825K 0.50 tolerated_low_confidence(0.21) possibly_damaging(0.874) TCGA-G2-A2ES-01 8 27361273 27361273 G T EPHX2 Missense_Mutation p.R113S 0.20 deleterious(0.02) possibly_damaging(0.625) TCGA-G2-A2ES-01 8 33370001 33370001 C T TTI2 Missense_Mutation p.R44Q 0.17 tolerated(0.36) benign(0.007) TCGA-G2-A2ES-01 8 33371063 33371063 C G TTI2 5'UTR 0.39 TCGA-G2-A2ES-01 8 38205724 38205724 C G WHSC1L1 5'UTR 0.20 TCGA-G2-A2ES-01 8 39645638 39645638 C A ADAM2 Missense_Mutation p.V259F 0.16 deleterious(0.03) benign(0.159) TCGA-G2-A2ES-01 8 53568671 53568671 C T RB1CC1 Missense_Mutation p.E1240K 0.43 tolerated(0.15) benign(0.001) TCGA-G2-A2ES-01 8 57353869 57353869 C T PENK Missense_Mutation p.E256K 0.37 deleterious(0.04) benign(0.072) TCGA-G2-A2ES-01 8 59728257 59728257 C G TOX Missense_Mutation p.K344N 0.26 deleterious(0) benign(0.395) TCGA-G2-A2ES-01 8 82670747 82670747 G A CHMP4C Missense_Mutation p.D224N 0.17 deleterious(0.02) benign(0.128) TCGA-G2-A2ES-01 8 87587971 87587971 A G CNGB3 3'UTR 0.29 TCGA-G2-A2ES-01 8 90995014 90995014 T G NBN Missense_Mutation p.E36A 0.22 deleterious(0.03) benign(0.069) TCGA-G2-A2ES-01 9 112018495 112018495 C T EPB41L4B Missense_Mutation p.G284S 0.61 deleterious(0.04) probably_damaging(1) TCGA-G2-A2ES-01 9 120470999 120471017 TTTATCCAGGTAATGAATC - TLR4 Splice_Site p.X84_splice 0.47 TCGA-G2-A2ES-01 9 123852674 123852674 G A CNTRL Silent p.K113K 0.53 TCGA-G2-A2ES-01 9 135564352 135564352 T C GTF3C4 3'UTR 0.54 TCGA-G2-A2ES-01 9 136269137 136269137 C T C9orf96 Missense_Mutation p.A566V 0.53 tolerated(0.08) possibly_damaging(0.742) TCGA-G2-A2ES-01 9 139745408 139745408 G A PHPT1 3'UTR 0.23 TCGA-G2-A2ES-01 9 21971209 21971209 T A CDKN2A Splice_Site p.X51_splice 0.52 TCGA-G2-A2ES-01 9 26947048 26947048 A G IFT74 5'Flank 0.33 TCGA-G2-A2ES-01 9 34125208 34125208 T A DCAF12 Missense_Mutation p.Y49F 0.52 deleterious(0.03) benign(0.003) TCGA-G2-A2ES-01 9 36276896 36276896 G A GNE Missense_Mutation p.P16S 0.51 tolerated_low_confidence(0.07) benign(0.006) TCGA-G2-A2ES-01 9 38016031 38016031 T C SHB Missense_Mutation p.Y272C 0.52 deleterious(0) probably_damaging(0.99) TCGA-G2-A2ES-01 9 6007547 6007547 G A KIAA2026 Nonsense_Mutation p.Q81* 0.59 TCGA-G2-A2ES-01 9 97522147 97522147 C A C9orf3 Missense_Mutation p.L28M 0.29 deleterious(0) probably_damaging(0.997) TCGA-G2-A2ES-01 X 107169341 107169341 G A MID2 Missense_Mutation p.D539N 0.49 deleterious(0.02) benign(0.016) TCGA-G2-A2ES-01 X 109459809 109459823 CCGTGGCAGCTCATC - AMMECR1 In_Frame_Del p.D208_R212del 0.40 TCGA-G2-A2ES-01 X 117959285 117959285 G A ZCCHC12 Silent p.L26L 0.59 TCGA-G2-A2ES-01 X 133511786 133511786 G A PHF6 Splice_Site p.X46_splice 0.50 TCGA-G2-A2ES-01 X 152128422 152128422 G T ZNF185 Missense_Mutation p.R561L 0.40 tolerated(0.64) benign(0.002) TCGA-G2-A2ES-01 X 23748661 23748661 T A ACOT9 Missense_Mutation p.D128V 0.58 deleterious(0) probably_damaging(0.999) TCGA-G2-A2ES-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.44 TCGA-G2-A2ES-01 X 49767798 49767798 C T CLCN5 Intron 0.52 TCGA-G2-A2ES-01 X 76919036 76919036 G C ATRX Missense_Mutation p.Q1319E 0.54 benign(0) TCGA-G2-A3IB-01 10 118228730 118228730 C A PNLIPRP3 Missense_Mutation p.P321T 0.49 deleterious(0) possibly_damaging(0.858) TCGA-G2-A3IB-01 10 46999113 46999113 C T GPRIN2 Missense_Mutation p.S78F 0.14 deleterious(0.03) possibly_damaging(0.606) TCGA-G2-A3IB-01 10 76603021 76603021 C G KAT6B Missense_Mutation p.Q136E 0.54 probably_damaging(0.956) TCGA-G2-A3IB-01 10 93751881 93751881 A G BTAF1 Missense_Mutation p.T954A 0.30 tolerated(1) benign(0.001) TCGA-G2-A3IB-01 11 281667 281667 G A NLRP6 Missense_Mutation p.A645T 0.47 tolerated(0.64) benign(0.003) TCGA-G2-A3IB-01 11 3744407 3744407 G C NUP98 Missense_Mutation p.S709C 0.38 tolerated(0.06) benign(0.413) TCGA-G2-A3IB-01 11 51411647 51411647 G T OR4A5 Missense_Mutation p.P250H 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G2-A3IB-01 11 55322491 55322491 T C OR4C15 Silent p.L237L 0.56 TCGA-G2-A3IB-01 11 57996150 57996150 G A OR10Q1 Silent p.F66F 0.32 TCGA-G2-A3IB-01 11 60229778 60229778 C A MS4A1 5'UTR 0.21 TCGA-G2-A3IB-01 11 9812207 9812207 C G SBF2 Missense_Mutation p.E1532Q 0.38 tolerated(0.38) benign(0.007) TCGA-G2-A3IB-01 12 113906970 113906970 G T LHX5 Missense_Mutation p.D118E 0.46 deleterious(0.03) probably_damaging(0.95) TCGA-G2-A3IB-01 12 24736473 24736473 C T LINC00477 RNA 0.45 TCGA-G2-A3IB-01 12 49420342 49420343 - GC KMT2D Frame_Shift_Ins p.H5136Rfs*12 0.29 TCGA-G2-A3IB-01 12 49447042 49447042 A - KMT2D Frame_Shift_Del p.F301Sfs*3 0.32 TCGA-G2-A3IB-01 12 8289381 8289381 C T CLEC4A Intron 0.49 TCGA-G2-A3IB-01 12 9262584 9262584 C A A2M Missense_Mutation p.E184D 0.40 deleterious(0.04) benign(0.008) TCGA-G2-A3IB-01 13 107187316 107187316 G A EFNB2 5'UTR 0.47 TCGA-G2-A3IB-01 13 24895231 24895231 G T C1QTNF9 Missense_Mutation p.M109I 0.49 tolerated(0.35) benign(0.002) TCGA-G2-A3IB-01 13 61986716 61986716 C A PCDH20 Missense_Mutation p.A506S 0.45 tolerated(0.52) benign(0.001) TCGA-G2-A3IB-01 13 96579318 96579318 C A UGGT2 Missense_Mutation p.V722L 0.24 tolerated(0.22) benign(0.069) TCGA-G2-A3IB-01 14 102028171 102028171 C T DIO3 Missense_Mutation p.S113L 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-G2-A3IB-01 14 104206397 104206397 C A PPP1R13B Missense_Mutation p.A786S 0.35 tolerated(0.67) benign(0.004) TCGA-G2-A3IB-01 14 21424500 21424500 G T RNASE2 3'UTR 0.47 TCGA-G2-A3IB-01 14 22671170 22671170 C T TRAV26-2 Silent p.L79L 0.44 TCGA-G2-A3IB-01 14 31349663 31349663 C T COCH Nonsense_Mutation p.R148* 0.40 TCGA-G2-A3IB-01 14 67671305 67671305 G A FAM71D Missense_Mutation p.M137I 0.19 deleterious(0.02) possibly_damaging(0.673) TCGA-G2-A3IB-01 14 73459948 73459948 G A ZFYVE1 Missense_Mutation p.T369M 0.49 deleterious(0) probably_damaging(0.915) TCGA-G2-A3IB-01 14 88983603 88983603 G A PTPN21 Silent p.V61V 0.20 TCGA-G2-A3IB-01 15 20644287 20644287 G T HERC2P3 RNA 0.19 TCGA-G2-A3IB-01 15 42454656 42454656 C T VPS39 Missense_Mutation p.M733I 0.19 tolerated(0.06) benign(0.108) TCGA-G2-A3IB-01 15 51741202 51741202 G T DMXL2 Missense_Mutation p.N3031K 0.26 deleterious(0.03) benign(0.046) TCGA-G2-A3IB-01 15 65918083 65918083 G T SLC24A1 Missense_Mutation p.W555C 0.40 probably_damaging(0.971) TCGA-G2-A3IB-01 15 78922018 78922018 C A CHRNB4 Missense_Mutation p.R210M 0.39 deleterious(0.02) probably_damaging(1) TCGA-G2-A3IB-01 16 20322574 20322574 G T GP2 Missense_Mutation p.L529M 0.43 tolerated(0.17) benign(0.104) TCGA-G2-A3IB-01 16 53730066 53730066 T A RPGRIP1L Missense_Mutation p.K76I 0.41 deleterious(0) probably_damaging(0.996) TCGA-G2-A3IB-01 16 80646693 80646693 C T CDYL2 Missense_Mutation p.V350M 0.32 deleterious(0) probably_damaging(1) TCGA-G2-A3IB-01 17 11584169 11584169 C A DNAH9 Missense_Mutation p.Q1236K 0.34 benign(0.001) TCGA-G2-A3IB-01 17 38564286 38564286 C G TOP2A Missense_Mutation p.R478T 0.33 deleterious(0) probably_damaging(0.983) TCGA-G2-A3IB-01 17 48452831 48452831 G T EME1 Nonsense_Mutation p.E88* 0.41 TCGA-G2-A3IB-01 17 58268030 58268030 C A USP32 Missense_Mutation p.C1179F 0.41 deleterious(0) probably_damaging(0.993) TCGA-G2-A3IB-01 17 71390398 71390398 A G SDK2 Missense_Mutation p.W1220R 0.49 deleterious(0) probably_damaging(1) TCGA-G2-A3IB-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.36 TCGA-G2-A3IB-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.48 deleterious(0) probably_damaging(0.993) TCGA-G2-A3IB-01 17 79826899 79826899 G A ARHGDIA Silent p.Y156Y 0.48 TCGA-G2-A3IB-01 18 21119389 21119389 G A NPC1 Silent p.F947F 0.41 TCGA-G2-A3IB-01 19 10206748 10206748 G A ANGPTL6 Silent p.F164F 0.53 TCGA-G2-A3IB-01 19 17972200 17972200 C A RPL18A Silent p.V39V 0.50 TCGA-G2-A3IB-01 19 31040189 31040189 G T ZNF536 Silent p.L1221L 0.52 TCGA-G2-A3IB-01 19 38262256 38262256 C T ZNF573 Silent p.R50R 0.39 TCGA-G2-A3IB-01 19 38966040 38966040 G A RYR1 Missense_Mutation p.V1415M 0.38 probably_damaging(0.964) TCGA-G2-A3IB-01 19 42526200 42526200 C A GRIK5 Missense_Mutation p.K532N 0.41 tolerated(0.69) benign(0.287) TCGA-G2-A3IB-01 19 46443268 46443268 C T NOVA2 Silent p.K444K 0.35 TCGA-G2-A3IB-01 19 56297208 56297208 G T NLRP11 Missense_Mutation p.T962N 0.36 deleterious(0.01) possibly_damaging(0.881) TCGA-G2-A3IB-01 19 758421 758421 C T MISP Missense_Mutation p.P492L 0.86 tolerated(0.15) benign(0.002) TCGA-G2-A3IB-01 19 9085867 9085867 G A MUC16 Missense_Mutation p.S1983F 0.60 unknown(0) TCGA-G2-A3IB-01 1 103461428 103461428 C A COL11A1 Missense_Mutation p.G778C 0.56 unknown(0) TCGA-G2-A3IB-01 1 110754241 110754241 C T KCNC4 Silent p.I40I 0.35 TCGA-G2-A3IB-01 1 118537064 118537064 G T SPAG17 Silent p.R1715R 0.35 TCGA-G2-A3IB-01 1 158517011 158517011 G T OR6Y1 Nonsense_Mutation p.Y295* 0.38 TCGA-G2-A3IB-01 1 169951164 169951164 C A KIFAP3 Missense_Mutation p.A583S 0.43 tolerated(0.67) benign(0.077) TCGA-G2-A3IB-01 1 227198689 227198689 G T CDC42BPA Intron 0.40 TCGA-G2-A3IB-01 1 23519904 23519904 G A HTR1D Missense_Mutation p.S270F 0.42 deleterious(0.01) possibly_damaging(0.887) TCGA-G2-A3IB-01 1 240071577 240071577 G A CHRM3 Missense_Mutation p.E276K 0.40 tolerated(0.17) benign(0.065) TCGA-G2-A3IB-01 1 47603170 47603170 G T CYP4A22 Missense_Mutation p.V5F 0.36 tolerated_low_confidence(0.3) benign(0.379) TCGA-G2-A3IB-01 1 50610812 50610812 C T ELAVL4 Missense_Mutation p.L82F 0.13 deleterious(0) probably_damaging(0.997) TCGA-G2-A3IB-01 21 47769714 47769714 G A PCNT Missense_Mutation p.E442K 0.39 benign(0.066) TCGA-G2-A3IB-01 22 19393309 19393309 C T HIRA Missense_Mutation p.D133N 0.34 deleterious(0) probably_damaging(1) TCGA-G2-A3IB-01 22 25131817 25131817 C T PIWIL3 Missense_Mutation p.E498K 0.30 tolerated(0.19) benign(0.001) TCGA-G2-A3IB-01 22 35463109 35463109 G A ISX Missense_Mutation p.C10Y 0.47 tolerated_low_confidence(1) benign(0) TCGA-G2-A3IB-01 22 38061710 38061710 G T PDXP Missense_Mutation p.E241D 0.31 tolerated(1) benign(0.006) TCGA-G2-A3IB-01 22 50869805 50869805 G A PPP6R2 Silent p.V444V 0.14 TCGA-G2-A3IB-01 2 103353184 103353184 C T MFSD9 Missense_Mutation p.G29E 0.42 tolerated_low_confidence(0.17) benign(0.005) TCGA-G2-A3IB-01 2 122038802 122038802 C A TFCP2L1 Silent p.L36L 0.34 TCGA-G2-A3IB-01 2 166848518 166848518 C A SCN1A Missense_Mutation p.C1756F 0.37 deleterious(0) probably_damaging(0.996) TCGA-G2-A3IB-01 2 168105238 168105238 C A XIRP2 Missense_Mutation p.L2446M 0.39 benign(0.21) TCGA-G2-A3IB-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.68 deleterious(0) probably_damaging(1) TCGA-G2-A3IB-01 2 207026135 207026135 G C EEF1B2 Missense_Mutation p.S90T 0.42 tolerated(0.18) benign(0.002) TCGA-G2-A3IB-01 2 217724316 217724316 G T TNP1 3'UTR 0.49 TCGA-G2-A3IB-01 2 70392226 70392226 C T C2orf42 Missense_Mutation p.E451K 0.44 tolerated(0.05) benign(0.121) TCGA-G2-A3IB-01 2 70392294 70392294 C G C2orf42 Missense_Mutation p.G428A 0.45 deleterious(0.01) probably_damaging(0.976) TCGA-G2-A3IB-01 2 71651159 71651159 C A ZNF638 Missense_Mutation p.S1505R 0.31 deleterious(0) possibly_damaging(0.779) TCGA-G2-A3IB-01 2 75915023 75915023 C T GCFC2 Silent p.K540K 0.30 TCGA-G2-A3IB-01 2 79350356 79350356 T A REG1A 3'UTR 0.50 TCGA-G2-A3IB-01 2 80101255 80101255 G A CTNNA2 Silent p.L213L 0.53 TCGA-G2-A3IB-01 3 133341937 133341937 C G TOPBP1 Missense_Mutation p.G1059A 1.00 tolerated(0.22) benign(0.297) TCGA-G2-A3IB-01 3 160285923 160285923 G C KPNA4 5'Flank 0.29 TCGA-G2-A3IB-01 3 186389456 186389456 G T HRG Missense_Mutation p.D146Y 0.53 deleterious(0.01) possibly_damaging(0.861) TCGA-G2-A3IB-01 3 30715617 30715617 G T TGFBR2 Missense_Mutation p.M450I 0.82 deleterious(0) probably_damaging(1) TCGA-G2-A3IB-01 3 58849547 58849547 C T C3orf67 Missense_Mutation p.G319S 0.91 tolerated(0.26) benign(0.032) TCGA-G2-A3IB-01 4 110884383 110884383 C A EGF Missense_Mutation p.P456Q 0.81 deleterious(0.02) probably_damaging(0.962) TCGA-G2-A3IB-01 4 151023702 151023702 G T DCLK2 Missense_Mutation p.W165L 0.92 deleterious(0) probably_damaging(1) TCGA-G2-A3IB-01 4 70355258 70355258 C T UGT2B4 Missense_Mutation p.E301K 0.79 tolerated(0.15) benign(0.018) TCGA-G2-A3IB-01 4 87022213 87022213 T G MAPK10 Missense_Mutation p.K241T 0.80 tolerated(0.51) benign(0.094) TCGA-G2-A3IB-01 5 111576460 111576460 G T EPB41L4A Nonsense_Mutation p.C281* 0.80 TCGA-G2-A3IB-01 5 1219713 1219713 C T SLC6A19 Missense_Mutation p.S491F 0.25 deleterious(0) probably_damaging(0.994) TCGA-G2-A3IB-01 5 170162862 170162862 C A KCNIP1 3'Flank 0.70 TCGA-G2-A3IB-01 5 33614431 33614431 C A ADAMTS12 Missense_Mutation p.Q813H 0.24 tolerated(0.25) benign(0.038) TCGA-G2-A3IB-01 5 79027444 79027444 G T CMYA5 Silent p.V952V 0.92 TCGA-G2-A3IB-01 6 142409788 142409788 G C NMBR Missense_Mutation p.S3C 0.35 deleterious_low_confidence(0.02) benign(0.005) TCGA-G2-A3IB-01 6 32029938 32029938 C A TNXB Silent p.V2388V 0.44 TCGA-G2-A3IB-01 6 36652020 36652020 C T CDKN1A Nonsense_Mutation p.R48* 0.31 TCGA-G2-A3IB-01 6 41908692 41908692 G A CCND3 Intron 0.46 TCGA-G2-A3IB-01 7 124404911 124404911 C A GPR37 Silent p.L40L 0.10 TCGA-G2-A3IB-01 7 148511213 148511213 C A EZH2 Silent p.P563P 0.39 TCGA-G2-A3IB-01 7 38500927 38500927 C T AMPH Missense_Mutation p.E325K 0.39 deleterious(0.01) possibly_damaging(0.766) TCGA-G2-A3IB-01 7 64530765 64530765 C G SNORA22 3'Flank 0.38 TCGA-G2-A3IB-01 8 103251109 103251109 G A RRM2B 5'UTR 0.39 TCGA-G2-A3IB-01 8 11180311 11180311 A G MTMR9 3'UTR 0.40 TCGA-G2-A3IB-01 8 124787454 124787454 C T FAM91A1 Silent p.L75L 0.47 TCGA-G2-A3IB-01 8 17868136 17868137 - TC PCM1 Frame_Shift_Ins p.D1727Vfs*38 0.45 TCGA-G2-A3IB-01 8 2040194 2040194 C T MYOM2 Missense_Mutation p.R617W 0.43 deleterious(0) probably_damaging(0.988) TCGA-G2-A3IB-01 8 55542115 55542115 G T RP1 Missense_Mutation p.L1891F 0.35 deleterious(0.01) probably_damaging(0.949) TCGA-G2-A3IB-01 8 70970924 70970924 C T PRDM14 Missense_Mutation p.R446Q 0.39 deleterious(0.03) benign(0.298) TCGA-G2-A3IB-01 9 125377931 125377931 G A OR1Q1 Missense_Mutation p.M305I 0.58 tolerated(1) benign(0) TCGA-G2-A3IB-01 9 129595162 129595162 G A ZBTB43 Missense_Mutation p.G125E 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A3IB-01 9 13121876 13121876 C G MPDZ Missense_Mutation p.R1698T 0.79 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IB-01 9 87366903 87366903 C A NTRK2 Silent p.V433V 0.42 TCGA-G2-A3IB-01 9 98209683 98209683 C A PTCH1 Missense_Mutation p.Q1285H 0.46 deleterious_low_confidence(0.05) benign(0.275) TCGA-G2-A3IB-01 X 108708376 108708376 C A GUCY2F Missense_Mutation p.D343Y 0.91 tolerated(0.07) benign(0.389) TCGA-G2-A3IB-01 X 148055007 148055007 A C AFF2 Missense_Mutation p.K1092Q 0.94 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A3IB-01 X 5810853 5810853 C A NLGN4X 3'UTR 0.88 TCGA-G2-A3IE-01 10 101157185 101157185 G C GOT1 3'UTR 0.26 TCGA-G2-A3IE-01 10 103371502 103371502 C A FBXW4 Missense_Mutation p.E334D 0.08 tolerated(0.27) benign(0.1) TCGA-G2-A3IE-01 10 104679843 104679843 G C CNNM2 Missense_Mutation p.E536Q 0.22 deleterious(0.01) possibly_damaging(0.628) TCGA-G2-A3IE-01 10 104814140 104814140 C G CNNM2 Missense_Mutation p.S607C 0.34 deleterious(0) probably_damaging(0.997) TCGA-G2-A3IE-01 10 118434641 118434641 C A HSPA12A Missense_Mutation p.G560V 0.07 deleterious(0) probably_damaging(0.943) TCGA-G2-A3IE-01 10 129899669 129899669 C T MKI67 Silent p.Q3186Q 0.28 TCGA-G2-A3IE-01 10 13361208 13361208 C G SEPHS1 Silent p.R371R 0.30 TCGA-G2-A3IE-01 10 22830915 22830915 C G PIP4K2A Missense_Mutation p.R285T 0.36 deleterious(0.01) possibly_damaging(0.685) TCGA-G2-A3IE-01 10 32096725 32096725 T C ARHGAP12 Missense_Mutation p.Y801C 0.25 deleterious(0.04) benign(0.009) TCGA-G2-A3IE-01 10 43883167 43883167 C G HNRNPF Missense_Mutation p.E56Q 0.40 deleterious(0) possibly_damaging(0.844) TCGA-G2-A3IE-01 10 45642902 45642902 C G RP11-445N18.7 RNA 0.25 TCGA-G2-A3IE-01 10 50819359 50819359 C T SLC18A3 Silent p.F191F 0.29 TCGA-G2-A3IE-01 10 55581763 55581763 A T PCDH15 Missense_Mutation p.L1910Q 0.07 tolerated_low_confidence(0.25) unknown(0) TCGA-G2-A3IE-01 10 5798582 5798582 C T FAM208B Silent p.L2205L 0.34 TCGA-G2-A3IE-01 10 7829810 7829810 C G KIN Missense_Mutation p.Q29H 0.38 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 10 79590569 79590569 G C DLG5 Missense_Mutation p.S604C 0.21 deleterious(0) probably_damaging(0.997) TCGA-G2-A3IE-01 10 90661443 90661443 C - STAMBPL1 5'UTR 0.12 TCGA-G2-A3IE-01 10 93778679 93778679 C T BTAF1 Missense_Mutation p.S1617L 0.14 tolerated(0.09) benign(0.003) TCGA-G2-A3IE-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.20 TCGA-G2-A3IE-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.33 TCGA-G2-A3IE-01 11 104034599 104034599 C T PDGFD Silent p.R19R 0.13 TCGA-G2-A3IE-01 11 105924026 105924026 C G KBTBD3 Missense_Mutation p.E464Q 0.47 tolerated(0.05) possibly_damaging(0.777) TCGA-G2-A3IE-01 11 10821737 10821737 G C EIF4G2 Silent p.L673L 0.52 TCGA-G2-A3IE-01 11 108236064 108236064 G C ATM Missense_Mutation p.Q3000H 0.21 deleterious(0) benign(0.027) TCGA-G2-A3IE-01 11 108236083 108236083 G A ATM Missense_Mutation p.E3007K 0.22 deleterious(0) possibly_damaging(0.521) TCGA-G2-A3IE-01 11 108236128 108236128 G T ATM Nonsense_Mutation p.E3022* 0.23 TCGA-G2-A3IE-01 11 108236160 108236160 G A ATM Silent p.V3032V 0.22 TCGA-G2-A3IE-01 11 110582892 110582892 C T ARHGAP20 Silent p.L21L 0.32 TCGA-G2-A3IE-01 11 113608339 113608339 G C ZW10 Silent p.L657L 0.30 TCGA-G2-A3IE-01 11 117306394 117306394 C T DSCAML1 Silent p.K1674K 0.29 TCGA-G2-A3IE-01 11 123448178 123448178 G C GRAMD1B Missense_Mutation p.E43Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-G2-A3IE-01 11 125859579 125859579 T G CDON Missense_Mutation p.E909A 0.04 deleterious(0) benign(0.308) TCGA-G2-A3IE-01 11 128839034 128839034 C A ARHGAP32 Missense_Mutation p.G2011V 0.25 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-G2-A3IE-01 11 133816031 133816031 A T IGSF9B Missense_Mutation p.F63I 0.36 tolerated(0.07) probably_damaging(0.997) TCGA-G2-A3IE-01 11 19253898 19253898 C T E2F8 Missense_Mutation p.D317N 0.31 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 11 35006268 35006268 C G PDHX Missense_Mutation p.S392C 0.31 deleterious(0) probably_damaging(0.981) TCGA-G2-A3IE-01 11 4608387 4608387 C T OR52I2 Silent p.F115F 0.43 TCGA-G2-A3IE-01 11 4608419 4608419 C G OR52I2 Missense_Mutation p.A126G 0.52 tolerated(0.23) benign(0.433) TCGA-G2-A3IE-01 11 46914632 46914632 G A LRP4 Missense_Mutation p.S530L 0.26 deleterious(0) probably_damaging(0.995) TCGA-G2-A3IE-01 11 47754150 47754150 C T FNBP4 Missense_Mutation p.E587K 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-G2-A3IE-01 11 48346641 48346641 G C OR4C3 Missense_Mutation p.R50T 0.34 deleterious(0.01) possibly_damaging(0.849) TCGA-G2-A3IE-01 11 56310058 56310058 G A OR5M11 Missense_Mutation p.R226W 0.31 deleterious(0) probably_damaging(0.954) TCGA-G2-A3IE-01 11 5686256 5686256 G A TRIM5 Missense_Mutation p.S422F 0.50 deleterious(0.03) benign(0.026) TCGA-G2-A3IE-01 11 57480128 57480128 C T TMX2 Missense_Mutation p.S13L 0.25 tolerated_low_confidence(0.38) benign(0.075) TCGA-G2-A3IE-01 11 61131770 61131770 G C TMEM138 5'UTR 0.33 TCGA-G2-A3IE-01 11 64002948 64002948 G A VEGFB Missense_Mutation p.D27N 0.30 tolerated(0.12) possibly_damaging(0.587) TCGA-G2-A3IE-01 11 64514251 64514251 G A PYGM Silent p.I803I 0.41 TCGA-G2-A3IE-01 11 65664326 65664326 C A FOSL1 Missense_Mutation p.R84L 0.26 deleterious(0.02) benign(0.422) TCGA-G2-A3IE-01 11 6591874 6591874 G C DNHD1 Missense_Mutation p.E4378Q 0.18 benign(0.209) TCGA-G2-A3IE-01 11 66272178 66272178 C T DPP3 Silent p.L658L 0.20 TCGA-G2-A3IE-01 11 67223206 67223206 G T CABP4 Silent p.L104L 0.11 TCGA-G2-A3IE-01 11 67287568 67287568 G C CABP2 Missense_Mutation p.T148R 0.17 deleterious(0) probably_damaging(0.993) TCGA-G2-A3IE-01 11 67789327 67789327 G A ALDH3B1 Missense_Mutation p.D311N 0.49 tolerated(0.11) benign(0.013) TCGA-G2-A3IE-01 11 71850770 71850770 G C FOLR3 Missense_Mutation p.Q253H 0.15 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 11 82938902 82938902 C G ANKRD42 Missense_Mutation p.P273A 0.24 tolerated(0.11) possibly_damaging(0.491) TCGA-G2-A3IE-01 11 85630484 85630484 C G CCDC83 Silent p.V422V 0.28 TCGA-G2-A3IE-01 11 88924428 88924428 C T TYR Missense_Mutation p.P293L 0.29 tolerated(0.28) benign(0.048) TCGA-G2-A3IE-01 12 104044296 104044296 G A STAB2 Silent p.L399L 0.25 TCGA-G2-A3IE-01 12 113388756 113388756 C G OAS3 Missense_Mutation p.L545V 0.30 tolerated(1) benign(0.05) TCGA-G2-A3IE-01 12 115118866 115118866 C G TBX3 Missense_Mutation p.D159H 0.24 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 12 124401030 124401030 C T DNAH10 Silent p.F3465F 0.40 TCGA-G2-A3IE-01 12 20874807 20874807 G T SLCO1C1 Missense_Mutation p.G282V 0.37 deleterious(0) probably_damaging(0.989) TCGA-G2-A3IE-01 12 21355522 21355522 A G SLCO1B1 Silent p.S411S 0.39 TCGA-G2-A3IE-01 12 2788756 2788756 G A CACNA1C Silent p.E1794E 0.31 TCGA-G2-A3IE-01 12 31820829 31820829 C T METTL20 Missense_Mutation p.H232Y 0.35 tolerated(0.2) benign(0.055) TCGA-G2-A3IE-01 12 49498238 49498238 G A LMBR1L Missense_Mutation p.S143F 0.30 tolerated(0.35) probably_damaging(0.999) TCGA-G2-A3IE-01 12 50232586 50232586 G A BCDIN3D Silent p.F149F 0.31 TCGA-G2-A3IE-01 12 52403023 52403023 G A GRASP Missense_Mutation p.R99Q 0.32 deleterious(0) probably_damaging(0.986) TCGA-G2-A3IE-01 12 53045825 53045825 C G KRT2 Silent p.R34R 0.34 TCGA-G2-A3IE-01 12 53621231 53621231 G A RARG Silent p.L33L 0.29 TCGA-G2-A3IE-01 12 57637672 57637672 C A STAC3 Nonsense_Mutation p.E340* 0.25 TCGA-G2-A3IE-01 12 78515755 78515755 C G NAV3 Missense_Mutation p.S1262C 0.27 deleterious(0.02) probably_damaging(0.952) TCGA-G2-A3IE-01 12 7883463 7883463 C T CLEC4C Missense_Mutation p.G143R 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-G2-A3IE-01 12 80771649 80771649 G C OTOGL Missense_Mutation p.G2286R 0.30 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 12 81741427 81741427 G T PPFIA2 Missense_Mutation p.A706D 0.38 tolerated(0.12) benign(0.12) TCGA-G2-A3IE-01 13 102359164 102359164 C G ITGBL1 Silent p.L397L 0.13 TCGA-G2-A3IE-01 13 73409499 73409499 G C PIBF1 Missense_Mutation p.E406Q 0.29 deleterious(0) probably_damaging(0.994) TCGA-G2-A3IE-01 13 77714227 77714227 C T MYCBP2 Silent p.Q2453Q 0.19 TCGA-G2-A3IE-01 13 99047670 99047670 G A FARP1 Missense_Mutation p.E452K 0.41 tolerated(0.68) benign(0.137) TCGA-G2-A3IE-01 14 106091086 106091086 C G IGHG4 Missense_Mutation p.E237D 0.09 deleterious(0.01) possibly_damaging(0.663) TCGA-G2-A3IE-01 14 106641745 106641745 G A IGHV1-18 Nonsense_Mutation p.R57* 0.05 TCGA-G2-A3IE-01 14 20824776 20824776 G A PARP2 Missense_Mutation p.M432I 0.24 deleterious(0.03) benign(0.008) TCGA-G2-A3IE-01 14 20848600 20848600 G A TEP1 Silent p.P1599P 0.12 TCGA-G2-A3IE-01 14 23533582 23533582 G A ACIN1 Silent p.I866I 0.33 TCGA-G2-A3IE-01 14 24780721 24780722 - C LTB4R2 Frame_Shift_Ins p.V286Gfs*36 0.22 TCGA-G2-A3IE-01 14 31611068 31611068 C T HECTD1 Missense_Mutation p.E957K 0.35 tolerated(0.48) benign(0.014) TCGA-G2-A3IE-01 14 32559808 32559808 G C ARHGAP5 5'UTR 0.15 TCGA-G2-A3IE-01 14 34419489 34419489 C G EGLN3 Intron 0.89 TCGA-G2-A3IE-01 14 36128344 36128344 C A RALGAPA1 Missense_Mutation p.R1290L 0.57 deleterious(0.01) probably_damaging(0.997) TCGA-G2-A3IE-01 14 50118022 50118022 G A POLE2 Missense_Mutation p.R429C 0.10 deleterious(0) probably_damaging(0.913) TCGA-G2-A3IE-01 14 50585132 50585132 T C SOS2 Missense_Mutation p.Y1310C 0.48 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-G2-A3IE-01 14 77242469 77242469 G A VASH1 Silent p.K255K 0.33 TCGA-G2-A3IE-01 14 88459326 88459326 G A GALC Silent p.V61V 0.58 TCGA-G2-A3IE-01 14 92471337 92471337 G A TRIP11 Nonsense_Mutation p.Q995* 0.13 TCGA-G2-A3IE-01 14 96924468 96924468 G C AK7 Missense_Mutation p.E426Q 0.46 tolerated(0.12) benign(0.365) TCGA-G2-A3IE-01 15 101109548 101109548 G C LINS Missense_Mutation p.I723M 0.34 deleterious(0) probably_damaging(0.973) TCGA-G2-A3IE-01 15 102291872 102291872 G A DNM1P47 RNA 0.38 TCGA-G2-A3IE-01 15 22925788 22925788 G T CYFIP1 Silent p.A2A 0.52 TCGA-G2-A3IE-01 15 43819552 43819552 G A MAP1A Missense_Mutation p.D1961N 0.25 probably_damaging(0.999) TCGA-G2-A3IE-01 15 43820098 43820098 G T MAP1A Nonsense_Mutation p.E2143* 0.18 TCGA-G2-A3IE-01 15 43821274 43821274 G A MAP1A Missense_Mutation p.E2535K 0.18 probably_damaging(0.996) TCGA-G2-A3IE-01 15 45047506 45047506 G C TRIM69 Missense_Mutation p.D139H 0.46 tolerated(0.12) probably_damaging(0.996) TCGA-G2-A3IE-01 15 48056959 48056959 G A SEMA6D Missense_Mutation p.D408N 0.06 tolerated(0.89) benign(0.027) TCGA-G2-A3IE-01 15 48548007 48548007 G A SLC12A1 Splice_Site p.X648_splice 0.18 TCGA-G2-A3IE-01 15 55912272 55912272 G T PRTG Missense_Mutation p.H1131N 0.38 tolerated_low_confidence(0.13) benign(0.048) TCGA-G2-A3IE-01 15 58357784 58357784 G A ALDH1A2 Missense_Mutation p.S22L 0.39 deleterious_low_confidence(0.02) benign(0.032) TCGA-G2-A3IE-01 15 63920999 63920999 T C HERC1 Missense_Mutation p.T4328A 0.29 probably_damaging(0.996) TCGA-G2-A3IE-01 15 66625127 66625127 C T DIS3L Missense_Mutation p.S912L 0.41 tolerated(0.25) benign(0.004) TCGA-G2-A3IE-01 15 69238236 69238236 C G SPESP1 Missense_Mutation p.F121L 0.49 deleterious(0) probably_damaging(0.997) TCGA-G2-A3IE-01 15 73866075 73866080 AGTGGC - NPTN In_Frame_Del p.A255_T256del 0.32 TCGA-G2-A3IE-01 15 75042806 75042806 C G CYP1A2 Missense_Mutation p.R243G 0.38 deleterious(0) possibly_damaging(0.642) TCGA-G2-A3IE-01 15 75308956 75308956 G A SCAMP5 Silent p.V53V 0.24 TCGA-G2-A3IE-01 15 75942838 75942838 C G SNX33 Silent p.L465L 0.39 TCGA-G2-A3IE-01 15 76797229 76797229 A G SCAPER Silent p.N975N 0.36 TCGA-G2-A3IE-01 15 79184578 79184578 G A MORF4L1 Missense_Mutation p.E194K 0.40 deleterious(0) possibly_damaging(0.777) TCGA-G2-A3IE-01 15 80423554 80423554 G A ZFAND6 Missense_Mutation p.E133K 0.13 tolerated(0.13) possibly_damaging(0.67) TCGA-G2-A3IE-01 15 86284652 86284652 G C AKAP13 Missense_Mutation p.E2666Q 0.38 deleterious(0.02) probably_damaging(0.988) TCGA-G2-A3IE-01 15 89834929 89834929 C G FANCI Missense_Mutation p.S659C 0.33 tolerated(0.2) benign(0.003) TCGA-G2-A3IE-01 15 89850893 89850893 C G FANCI Missense_Mutation p.S1214C 0.23 deleterious(0.03) benign(0.02) TCGA-G2-A3IE-01 15 99459287 99459287 G C IGF1R Silent p.L641L 0.45 TCGA-G2-A3IE-01 16 10996617 10996617 C G CIITA Missense_Mutation p.S244C 0.35 deleterious(0.01) possibly_damaging(0.88) TCGA-G2-A3IE-01 16 16297332 16297332 G A ABCC6 Silent p.F311F 0.19 TCGA-G2-A3IE-01 16 19468063 19468063 T C TMC5 Intron 0.22 TCGA-G2-A3IE-01 16 20702570 20702570 G C ACSM1 5'UTR 0.32 TCGA-G2-A3IE-01 16 20787320 20787320 C T ACSM3 Silent p.L127L 0.20 TCGA-G2-A3IE-01 16 23197561 23197561 C T SCNN1G 5'UTR 0.26 TCGA-G2-A3IE-01 16 24802435 24802435 G C TNRC6A Missense_Mutation p.E824D 0.42 tolerated(0.78) benign(0.005) TCGA-G2-A3IE-01 16 27456588 27456588 C T IL21R Missense_Mutation p.P259L 0.47 tolerated(0.23) benign(0.001) TCGA-G2-A3IE-01 16 29918391 29918391 C T KCTD13 Silent p.L264L 0.69 TCGA-G2-A3IE-01 16 30134479 30134479 C G MAPK3 Missense_Mutation p.E18Q 0.72 tolerated(0.44) benign(0.029) TCGA-G2-A3IE-01 16 30616102 30616102 G T ZNF689 Missense_Mutation p.S329Y 0.13 tolerated(0.13) probably_damaging(0.915) TCGA-G2-A3IE-01 16 30780218 30780218 G C RNF40 Missense_Mutation p.K719N 0.66 deleterious(0.01) probably_damaging(0.969) TCGA-G2-A3IE-01 16 3085540 3085540 C G CCDC64B Intron 0.19 TCGA-G2-A3IE-01 16 31226097 31226097 C G TRIM72 Missense_Mutation p.S13C 0.32 deleterious(0.04) probably_damaging(0.979) TCGA-G2-A3IE-01 16 4310208 4310208 C T TFAP4 Silent p.V235V 0.36 TCGA-G2-A3IE-01 16 4721438 4721438 A T MGRN1 Missense_Mutation p.N258I 0.31 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 16 57693505 57693505 C G GPR56 Silent p.L495L 0.28 TCGA-G2-A3IE-01 16 57693541 57693541 C G GPR56 Silent p.V507V 0.22 TCGA-G2-A3IE-01 16 57693571 57693571 C G GPR56 Silent p.L517L 0.19 TCGA-G2-A3IE-01 16 68844139 68844139 G C CDH1 Missense_Mutation p.E243Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-G2-A3IE-01 16 68845691 68845691 G A CDH1 Missense_Mutation p.D313N 0.38 tolerated(0.49) benign(0) TCGA-G2-A3IE-01 16 71792315 71792315 C T AP1G1 Intron 0.31 TCGA-G2-A3IE-01 16 74394786 74394786 C G RP11-252A24.2 RNA 0.36 TCGA-G2-A3IE-01 16 74493622 74493622 G C GLG1 Silent p.L1034L 0.33 TCGA-G2-A3IE-01 16 87677915 87677915 G A JPH3 Missense_Mutation p.R145Q 0.51 deleterious(0) probably_damaging(0.949) TCGA-G2-A3IE-01 16 9858060 9858060 C G GRIN2A Missense_Mutation p.R1114T 0.17 tolerated(0.2) possibly_damaging(0.472) TCGA-G2-A3IE-01 16 9916214 9916214 C G GRIN2A Missense_Mutation p.R692T 0.21 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 17 10543493 10543493 G T MYH3 Missense_Mutation p.F834L 0.48 deleterious(0.04) benign(0.02) TCGA-G2-A3IE-01 17 17083324 17083324 G A MPRIP Missense_Mutation p.M989I 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.458) TCGA-G2-A3IE-01 17 27030629 27030629 T C PROCA1 Missense_Mutation p.R320G 0.36 deleterious_low_confidence(0) possibly_damaging(0.562) TCGA-G2-A3IE-01 17 29196272 29196272 C T ATAD5 Missense_Mutation p.S1107L 0.35 tolerated(0.77) benign(0.002) TCGA-G2-A3IE-01 17 30348940 30348940 C G LRRC37B Missense_Mutation p.Q259E 0.32 tolerated(0.29) probably_damaging(0.966) TCGA-G2-A3IE-01 17 32688819 32688819 G A CCL1 Missense_Mutation p.S58F 0.31 tolerated(0.44) benign(0.2) TCGA-G2-A3IE-01 17 34856680 34856680 G A MYO19 Silent p.L789L 0.11 TCGA-G2-A3IE-01 17 34958561 34958561 G A MRM1 Missense_Mutation p.D108N 0.43 tolerated(0.1) possibly_damaging(0.557) TCGA-G2-A3IE-01 17 35804849 35804849 G A TADA2A Missense_Mutation p.D195N 0.33 tolerated(0.07) possibly_damaging(0.471) TCGA-G2-A3IE-01 17 38787930 38787930 C G SMARCE1 Missense_Mutation p.E244Q 0.34 deleterious(0) possibly_damaging(0.727) TCGA-G2-A3IE-01 17 40317544 40317544 G A KCNH4 Missense_Mutation p.P670S 0.19 deleterious(0) benign(0.428) TCGA-G2-A3IE-01 17 40317638 40317638 G A KCNH4 Silent p.F638F 0.39 TCGA-G2-A3IE-01 17 40321612 40321612 G A KCNH4 Silent p.R491R 0.29 TCGA-G2-A3IE-01 17 40714609 40714609 C G COASY Intron 0.65 TCGA-G2-A3IE-01 17 40818102 40818102 C T TUBG2 Intron 0.35 TCGA-G2-A3IE-01 17 40818450 40818450 C T TUBG2 Missense_Mutation p.S369L 0.35 tolerated(0.09) benign(0.013) TCGA-G2-A3IE-01 17 48599420 48599420 G A MYCBPAP Missense_Mutation p.R455K 0.59 tolerated(0.22) probably_damaging(0.962) TCGA-G2-A3IE-01 17 5009120 5009120 C G ZNF232 Nonstop_Mutation p.*445Sext*15 0.63 TCGA-G2-A3IE-01 17 5009220 5009220 C G ZNF232 Missense_Mutation p.E412Q 0.57 deleterious(0) benign(0.181) TCGA-G2-A3IE-01 17 5009367 5009367 C G ZNF232 Missense_Mutation p.E363Q 0.43 deleterious(0.02) possibly_damaging(0.448) TCGA-G2-A3IE-01 17 5009634 5009634 C T ZNF232 Missense_Mutation p.E274K 0.54 tolerated(0.31) possibly_damaging(0.486) TCGA-G2-A3IE-01 17 5324736 5324736 G A RPAIN Missense_Mutation p.E68K 0.59 deleterious(0) probably_damaging(0.996) TCGA-G2-A3IE-01 17 7256979 7256979 G C KCTD11 3'UTR 0.64 TCGA-G2-A3IE-01 17 73488566 73488566 G C KIAA0195 Silent p.G536G 0.12 TCGA-G2-A3IE-01 17 75196652 75196652 G C SEC14L1 Missense_Mutation p.L302F 0.62 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.57 deleterious(0.04) possibly_damaging(0.83) TCGA-G2-A3IE-01 17 7643069 7643069 C T DNAH2 Missense_Mutation p.H397Y 0.56 probably_damaging(0.952) TCGA-G2-A3IE-01 17 8272483 8272483 G C KRBA2 Nonsense_Mutation p.S483* 0.51 TCGA-G2-A3IE-01 17 8422065 8422065 C G MYH10 Missense_Mutation p.Q796H 0.51 probably_damaging(0.997) TCGA-G2-A3IE-01 18 40323592 40323592 A T RIT2 Missense_Mutation p.F174I 0.36 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 18 45567023 45567023 C G ZBTB7C Missense_Mutation p.E152D 0.21 tolerated(0.68) benign(0) TCGA-G2-A3IE-01 18 56203518 56203518 C G ALPK2 Missense_Mutation p.E1301Q 0.32 tolerated(1) benign(0) TCGA-G2-A3IE-01 18 56587297 56587297 C T ZNF532 Missense_Mutation p.P593L 0.26 deleterious(0.04) probably_damaging(0.975) TCGA-G2-A3IE-01 18 57363928 57363928 C A CCBE1 Nonsense_Mutation p.E49* 0.16 TCGA-G2-A3IE-01 18 77246380 77246380 C G NFATC1 Missense_Mutation p.S729C 0.30 deleterious(0) possibly_damaging(0.873) TCGA-G2-A3IE-01 19 10602630 10602630 C T KEAP1 Silent p.V316V 0.38 TCGA-G2-A3IE-01 19 10602848 10602848 C T KEAP1 Missense_Mutation p.E244K 0.22 deleterious(0) probably_damaging(0.958) TCGA-G2-A3IE-01 19 11200151 11200151 G T LDLR 5'UTR 0.32 TCGA-G2-A3IE-01 19 11545659 11545659 C G CCDC151 Missense_Mutation p.R60T 0.26 tolerated(0.46) benign(0.004) TCGA-G2-A3IE-01 19 11891595 11891595 C T ZNF441 Missense_Mutation p.S319F 0.36 tolerated(0.7) possibly_damaging(0.788) TCGA-G2-A3IE-01 19 12786441 12786441 G T WDR83 Missense_Mutation p.Q301H 0.30 tolerated(0.54) benign(0.001) TCGA-G2-A3IE-01 19 16770802 16770802 C T CTC-429P9.4 Silent p.L10L 0.19 TCGA-G2-A3IE-01 19 18943112 18943112 G C UPF1 Missense_Mutation p.E32Q 0.46 tolerated(0.65) benign(0.133) TCGA-G2-A3IE-01 19 20727954 20727954 T C ZNF737 Missense_Mutation p.Y352C 0.34 tolerated(0.23) benign(0.005) TCGA-G2-A3IE-01 19 22847709 22847709 T A ZNF492 Missense_Mutation p.I413K 0.31 tolerated(1) benign(0.002) TCGA-G2-A3IE-01 19 22847715 22847715 A G ZNF492 Missense_Mutation p.H415R 0.28 deleterious(0) possibly_damaging(0.842) TCGA-G2-A3IE-01 19 2427251 2427251 C A TIMM13 Intron 0.25 TCGA-G2-A3IE-01 19 2933592 2933592 C G ZNF77 Silent p.V511V 0.32 TCGA-G2-A3IE-01 19 3620192 3620192 C A CACTIN Nonsense_Mutation p.E273* 0.26 TCGA-G2-A3IE-01 19 39909624 39909624 C G PLEKHG2 Missense_Mutation p.P415R 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-G2-A3IE-01 19 40710537 40710537 G A MAP3K10 Missense_Mutation p.E337K 0.36 tolerated(0.56) benign(0.183) TCGA-G2-A3IE-01 19 40886736 40886736 C A HIPK4 Missense_Mutation p.D388Y 0.50 deleterious(0) possibly_damaging(0.701) TCGA-G2-A3IE-01 19 42407459 42407459 G A ARHGEF1 Missense_Mutation p.E596K 0.21 tolerated(0.1) benign(0.006) TCGA-G2-A3IE-01 19 42583877 42583877 C T ZNF574 Silent p.F373F 0.18 TCGA-G2-A3IE-01 19 46195241 46195241 C G SNRPD2 5'UTR 0.27 TCGA-G2-A3IE-01 19 48197590 48197590 C G GLTSCR1 Missense_Mutation p.I834M 0.67 unknown(0) TCGA-G2-A3IE-01 19 4910993 4910993 C A UHRF1 RNA 0.40 TCGA-G2-A3IE-01 19 4911005 4911005 C T UHRF1 RNA 0.41 TCGA-G2-A3IE-01 19 49954846 49954846 G C PIH1D1 5'UTR 0.19 TCGA-G2-A3IE-01 19 50155777 50155777 G A SCAF1 Missense_Mutation p.D711N 0.62 unknown(0) TCGA-G2-A3IE-01 19 50548458 50548458 C T ZNF473 Missense_Mutation p.S253F 0.16 tolerated(0.81) possibly_damaging(0.831) TCGA-G2-A3IE-01 19 50881973 50881973 C T NR1H2 Nonsense_Mutation p.Q223* 0.44 TCGA-G2-A3IE-01 19 51295390 51295390 G A ACPT Missense_Mutation p.E171K 0.47 tolerated(0.42) possibly_damaging(0.742) TCGA-G2-A3IE-01 19 54634824 54634824 C T PRPF31 Silent p.L487L 0.43 TCGA-G2-A3IE-01 19 54758713 54758713 G C LILRB5 Missense_Mutation p.F380L 0.24 deleterious(0) probably_damaging(0.983) TCGA-G2-A3IE-01 19 57335838 57335838 C T PEG3 Silent p.K62K 0.13 TCGA-G2-A3IE-01 19 58864380 58864381 CC - A1BG Frame_Shift_Del p.G85* 0.17 TCGA-G2-A3IE-01 19 6466563 6466563 G A CRB3 Silent p.R81R 0.44 TCGA-G2-A3IE-01 19 7615400 7615400 C G PNPLA6 Intron 0.37 TCGA-G2-A3IE-01 19 8615474 8615474 C T MYO1F Silent p.G292G 0.31 TCGA-G2-A3IE-01 19 9084427 9084427 G C MUC16 Missense_Mutation p.S2463W 0.29 unknown(0) TCGA-G2-A3IE-01 1 100154591 100154591 G C PALMD Missense_Mutation p.E259Q 0.31 tolerated(0.06) probably_damaging(0.926) TCGA-G2-A3IE-01 1 103487275 103487275 T C COL11A1 Silent p.A432A 0.44 TCGA-G2-A3IE-01 1 1103283 1103283 C T MIR200A RNA 0.44 TCGA-G2-A3IE-01 1 11078800 11078800 A C TARDBP Missense_Mutation p.D138A 0.04 deleterious(0) probably_damaging(0.974) TCGA-G2-A3IE-01 1 12183421 12183421 G C TNFRSF8 Missense_Mutation p.E343Q 0.33 tolerated(0.25) benign(0.409) TCGA-G2-A3IE-01 1 145609263 145609263 C G POLR3C Missense_Mutation p.G25A 0.19 tolerated(0.24) probably_damaging(0.957) TCGA-G2-A3IE-01 1 149858934 149858934 G C HIST2H2AC 3'UTR 0.13 TCGA-G2-A3IE-01 1 149884828 149884828 C T SV2A Missense_Mutation p.V189M 0.54 deleterious(0) probably_damaging(0.993) TCGA-G2-A3IE-01 1 150981086 150981086 G A PRUNE 5'UTR 0.56 TCGA-G2-A3IE-01 1 152129435 152129435 C T RPTN Missense_Mutation p.R47K 0.05 tolerated(0.08) possibly_damaging(0.739) TCGA-G2-A3IE-01 1 155698864 155698867 AGAG - DAP3 Frame_Shift_Del p.R213Kfs*17 0.11 TCGA-G2-A3IE-01 1 156046708 156046708 G C MEX3A Missense_Mutation p.S407C 0.44 deleterious(0.04) possibly_damaging(0.57) TCGA-G2-A3IE-01 1 158549434 158549434 C T OR10X1 Missense_Mutation p.E86K 0.27 deleterious(0) probably_damaging(0.997) TCGA-G2-A3IE-01 1 15900090 15900092 TTC - AGMAT 3'UTR 0.33 TCGA-G2-A3IE-01 1 180913687 180913687 C G KIAA1614 Intron 0.33 TCGA-G2-A3IE-01 1 1849689 1849689 C G TMEM52 Intron 0.29 TCGA-G2-A3IE-01 1 197072567 197072567 C T ASPM Silent p.R1938R 0.26 TCGA-G2-A3IE-01 1 204501325 204501325 C G MDM4 Silent p.L98L 0.29 TCGA-G2-A3IE-01 1 210187104 210187104 C G SYT14 Nonsense_Mutation p.S108* 0.15 TCGA-G2-A3IE-01 1 2105377 2105377 G C PRKCZ Missense_Mutation p.E443Q 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-G2-A3IE-01 1 222833629 222833629 C T MIA3 Nonsense_Mutation p.R1696* 0.26 TCGA-G2-A3IE-01 1 226827299 226827299 C T ITPKB Missense_Mutation p.E838K 0.34 tolerated(0.08) benign(0.031) TCGA-G2-A3IE-01 1 228033952 228033952 G A PRSS38 3'UTR 0.33 TCGA-G2-A3IE-01 1 23376901 23376901 A G KDM1A Missense_Mutation p.Q200R 0.23 deleterious(0.03) probably_damaging(0.946) TCGA-G2-A3IE-01 1 236205225 236205225 C A NID1 Nonsense_Mutation p.E374* 0.36 TCGA-G2-A3IE-01 1 23908141 23908141 G A MDS2 RNA 0.42 TCGA-G2-A3IE-01 1 24768670 24768670 C T NIPAL3 Silent p.F96F 0.33 TCGA-G2-A3IE-01 1 248550938 248550938 G C OR2T6 Missense_Mutation p.R10T 0.19 tolerated(0.53) benign(0) TCGA-G2-A3IE-01 1 2938571 2938571 G A ACTRT2 Silent p.L107L 0.38 TCGA-G2-A3IE-01 1 33562402 33562402 C T ADC Missense_Mutation p.S283L 0.03 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 1 33987121 33987121 G A CSMD2 Silent p.F3369F 0.37 TCGA-G2-A3IE-01 1 35452810 35452810 C G ZMYM6 Missense_Mutation p.L1291F 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G2-A3IE-01 1 38003556 38003556 G A SNIP1 Silent p.I328I 0.36 TCGA-G2-A3IE-01 1 43212919 43212919 C G LEPRE1 Missense_Mutation p.E693D 0.41 deleterious_low_confidence(0) benign(0) TCGA-G2-A3IE-01 1 6688662 6688662 C T THAP3 Missense_Mutation p.R60W 0.44 deleterious(0) probably_damaging(0.972) TCGA-G2-A3IE-01 1 7724825 7724825 G A CAMTA1 Missense_Mutation p.V740M 0.40 tolerated_low_confidence(0.46) benign(0.013) TCGA-G2-A3IE-01 1 86203124 86203124 G A COL24A1 Silent p.F1579F 0.18 TCGA-G2-A3IE-01 1 93692001 93692001 G A CCDC18 Missense_Mutation p.E816K 0.29 tolerated(0.07) benign(0.379) TCGA-G2-A3IE-01 1 97981460 97981460 A T DPYD Missense_Mutation p.L521Q 0.13 deleterious(0) probably_damaging(0.972) TCGA-G2-A3IE-01 1 98039506 98039506 T C DPYD Silent p.E383E 0.36 TCGA-G2-A3IE-01 20 1106163 1106163 C T PSMF1 Missense_Mutation p.S51L 0.27 deleterious(0) probably_damaging(0.994) TCGA-G2-A3IE-01 20 30753246 30753246 G C TM9SF4 Nonstop_Mutation p.*643Sext*27 0.38 TCGA-G2-A3IE-01 20 30816133 30816133 G A POFUT1 Missense_Mutation p.E204K 0.32 deleterious(0.01) possibly_damaging(0.759) TCGA-G2-A3IE-01 20 39802354 39802354 G A PLCG1 Missense_Mutation p.E1153K 0.32 tolerated(0.26) benign(0.155) TCGA-G2-A3IE-01 20 41385232 41385232 G C PTPRT Silent p.V243V 0.23 TCGA-G2-A3IE-01 20 41419965 41419965 G A PTPRT Missense_Mutation p.A119V 0.45 tolerated(0.12) benign(0.13) TCGA-G2-A3IE-01 20 43385652 43385652 C G RIMS4 Missense_Mutation p.E161Q 0.32 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-G2-A3IE-01 20 43995738 43995738 C T SYS1 Missense_Mutation p.P152S 0.28 tolerated(0.13) benign(0.119) TCGA-G2-A3IE-01 20 44442074 44442074 A G UBE2C Splice_Site p.X34_splice 0.21 TCGA-G2-A3IE-01 20 44684813 44684813 C G SLC12A5 Missense_Mutation p.R961G 0.29 tolerated(0.05) possibly_damaging(0.587) TCGA-G2-A3IE-01 20 49576335 49576335 C A MOCS3 Nonsense_Mutation p.S319* 0.23 TCGA-G2-A3IE-01 20 61041539 61041539 C T GATA5 Silent p.R256R 0.47 TCGA-G2-A3IE-01 20 61299480 61299480 C A SLCO4A1 Missense_Mutation p.F585L 0.28 deleterious(0) possibly_damaging(0.835) TCGA-G2-A3IE-01 20 8782742 8782742 G A PLCB1 Intron 0.30 TCGA-G2-A3IE-01 21 10906963 10906963 A T TPTE Missense_Mutation p.V533E 0.11 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 21 18933792 18933792 C T CXADR Silent p.I277I 0.39 TCGA-G2-A3IE-01 21 32598123 32598123 C T TIAM1 Missense_Mutation p.M576I 0.31 deleterious(0.02) possibly_damaging(0.478) TCGA-G2-A3IE-01 21 33069064 33069064 C T SCAF4 Splice_Site p.X260_splice 0.32 TCGA-G2-A3IE-01 21 34640812 34640812 C T AP000295.9 Nonsense_Mutation p.Q183* 0.22 TCGA-G2-A3IE-01 21 34717650 34717650 C T IFNAR1 Nonsense_Mutation p.Q258* 0.23 TCGA-G2-A3IE-01 21 34717656 34717656 C T IFNAR1 Nonsense_Mutation p.Q260* 0.26 TCGA-G2-A3IE-01 21 35166747 35166747 G C ITSN1 Missense_Mutation p.E643Q 0.33 tolerated(0.4) benign(0.048) TCGA-G2-A3IE-01 21 39817505 39817505 C G ERG Missense_Mutation p.E27Q 0.31 deleterious(0.01) possibly_damaging(0.811) TCGA-G2-A3IE-01 21 41142978 41142978 C G IGSF5 Nonsense_Mutation p.S185* 0.29 TCGA-G2-A3IE-01 21 43800263 43800263 C A TMPRSS3 Silent p.V337V 0.07 TCGA-G2-A3IE-01 21 45743762 45743762 C T PFKL Silent p.F537F 0.31 TCGA-G2-A3IE-01 21 45948467 45948467 C G TSPEAR Splice_Site p.X264_splice 0.47 TCGA-G2-A3IE-01 21 48071832 48071832 C T PRMT2 Intron 0.27 TCGA-G2-A3IE-01 21 48071881 48071881 C G PRMT2 Intron 0.27 TCGA-G2-A3IE-01 22 24376503 24376503 G A GSTT1 Silent p.L215L 0.20 TCGA-G2-A3IE-01 22 25150040 25150040 C G PIWIL3 Missense_Mutation p.Q306H 0.15 tolerated(0.1) possibly_damaging(0.67) TCGA-G2-A3IE-01 22 28195117 28195117 G A MN1 Missense_Mutation p.S472L 0.67 benign(0.062) TCGA-G2-A3IE-01 22 31289875 31289875 G T OSBP2 Missense_Mutation p.M754I 0.67 tolerated(0.51) benign(0.042) TCGA-G2-A3IE-01 22 50530602 50530602 G C MOV10L1 Silent p.L90L 0.71 TCGA-G2-A3IE-01 22 50726223 50726223 C A PLXNB2 Splice_Site p.X494_splice 0.56 TCGA-G2-A3IE-01 2 10263127 10263127 G A RRM2 Silent p.G99G 0.30 TCGA-G2-A3IE-01 2 105924617 105924617 G A TGFBRAP1 Missense_Mutation p.H48Y 0.08 deleterious(0) benign(0.305) TCGA-G2-A3IE-01 2 108994856 108994856 C T SULT1C4 Silent p.Y21Y 0.30 TCGA-G2-A3IE-01 2 11053189 11053189 G A KCNF1 Missense_Mutation p.E213K 0.48 tolerated(0.79) benign(0.098) TCGA-G2-A3IE-01 2 113190963 113190963 C G RGPD8 Missense_Mutation p.R23P 0.36 tolerated(0.07) benign(0.065) TCGA-G2-A3IE-01 2 113885159 113885159 C G IL1RN Intron 0.42 TCGA-G2-A3IE-01 2 152381062 152381062 C G NEB Missense_Mutation p.K7447N 0.36 possibly_damaging(0.871) TCGA-G2-A3IE-01 2 168103798 168103798 C T XIRP2 Nonsense_Mutation p.Q1966* 0.45 TCGA-G2-A3IE-01 2 170605931 170605931 G C KLHL23 Splice_Site p.X456_splice 0.56 TCGA-G2-A3IE-01 2 172928567 172928567 C G METAP1D Silent p.L109L 0.40 TCGA-G2-A3IE-01 2 17877556 17877556 C G SMC6 Missense_Mutation p.E844D 0.27 deleterious(0.01) possibly_damaging(0.72) TCGA-G2-A3IE-01 2 190531483 190531483 G A ASNSD1 Missense_Mutation p.E209K 0.20 tolerated(0.31) benign(0.003) TCGA-G2-A3IE-01 2 191841752 191841752 C G STAT1 Splice_Site p.X625_splice 0.31 TCGA-G2-A3IE-01 2 202003167 202003167 C G CFLAR Intron 0.24 TCGA-G2-A3IE-01 2 202025318 202025318 G A CFLAR Silent p.Q319Q 0.36 TCGA-G2-A3IE-01 2 204016211 204016211 A T NBEAL1 Missense_Mutation p.K1800M 0.16 deleterious(0) probably_damaging(0.95) TCGA-G2-A3IE-01 2 220400035 220400035 G C ASIC4 Missense_Mutation p.E514D 0.45 deleterious(0.01) possibly_damaging(0.608) TCGA-G2-A3IE-01 2 231110622 231110622 G T SP140 Nonsense_Mutation p.E237* 0.20 TCGA-G2-A3IE-01 2 26706333 26706333 C T OTOF Silent p.Q463Q 0.31 TCGA-G2-A3IE-01 2 27997305 27997305 G C MRPL33 Missense_Mutation p.R19T 0.32 deleterious(0) benign(0.446) TCGA-G2-A3IE-01 2 27997348 27997348 G A MRPL33 Silent p.K33K 0.37 TCGA-G2-A3IE-01 2 29386751 29386751 T G CLIP4 Missense_Mutation p.V530G 0.14 deleterious(0) probably_damaging(0.995) TCGA-G2-A3IE-01 2 45616464 45616464 G A SRBD1 Silent p.L991L 0.34 TCGA-G2-A3IE-01 2 47277133 47277133 G T TTC7A Missense_Mutation p.K655N 0.25 tolerated(0.27) benign(0.015) TCGA-G2-A3IE-01 2 62066591 62066591 G T FAM161A Silent p.P516P 0.27 TCGA-G2-A3IE-01 2 69002384 69002384 G A ARHGAP25 Silent p.Q31Q 0.34 TCGA-G2-A3IE-01 2 74754468 74754468 C G AUP1 Missense_Mutation p.L328F 0.29 deleterious(0.02) possibly_damaging(0.555) TCGA-G2-A3IE-01 2 75879657 75879657 C G MRPL19 Missense_Mutation p.L117V 0.29 deleterious(0.03) probably_damaging(1) TCGA-G2-A3IE-01 2 88485580 88485580 C T THNSL2 Missense_Mutation p.R465W 0.27 deleterious(0) probably_damaging(0.987) TCGA-G2-A3IE-01 3 113378792 113378792 C G KIAA2018 Missense_Mutation p.Q579H 0.05 probably_damaging(0.923) TCGA-G2-A3IE-01 3 113847752 113847752 G A DRD3 Silent p.F338F 0.36 TCGA-G2-A3IE-01 3 123419015 123419015 G C MYLK Missense_Mutation p.F1100L 0.35 deleterious(0.04) benign(0.069) TCGA-G2-A3IE-01 3 124413237 124413237 G A AC080008.1 3'Flank 0.31 TCGA-G2-A3IE-01 3 124739800 124739800 G C HEG1 Missense_Mutation p.S363C 0.24 deleterious(0) probably_damaging(0.963) TCGA-G2-A3IE-01 3 126185066 126185066 C G ZXDC Missense_Mutation p.C458S 0.35 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 3 127800229 127800229 G A RUVBL1 Missense_Mutation p.P412L 0.05 deleterious(0) probably_damaging(0.934) TCGA-G2-A3IE-01 3 12859276 12859276 G A CAND2 Missense_Mutation p.E949K 0.62 deleterious(0) benign(0.405) TCGA-G2-A3IE-01 3 130282479 130282479 A G COL6A6 Missense_Mutation p.E211G 0.07 tolerated(0.09) benign(0.05) TCGA-G2-A3IE-01 3 132213965 132213965 C G DNAJC13 Missense_Mutation p.F1325L 0.27 deleterious(0.05) possibly_damaging(0.6) TCGA-G2-A3IE-01 3 15297659 15297659 G A SH3BP5 Silent p.L434L 0.53 TCGA-G2-A3IE-01 3 159706971 159706971 C G IL12A Intron 0.28 TCGA-G2-A3IE-01 3 160968072 160968072 G A NMD3 Missense_Mutation p.E447K 0.35 deleterious(0) probably_damaging(0.968) TCGA-G2-A3IE-01 3 172165775 172165775 G A GHSR Silent p.F143F 0.21 TCGA-G2-A3IE-01 3 184922354 184922354 C T EHHADH Missense_Mutation p.E254K 0.29 tolerated(0.08) benign(0.013) TCGA-G2-A3IE-01 3 194159590 194159590 C G ATP13A3 Missense_Mutation p.E608Q 0.30 tolerated(0.28) benign(0.062) TCGA-G2-A3IE-01 3 195451911 195451911 A C MUC20 Missense_Mutation p.D146A 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-G2-A3IE-01 3 197701923 197701923 G A LMLN Missense_Mutation p.E110K 0.28 tolerated(0.05) possibly_damaging(0.856) TCGA-G2-A3IE-01 3 32582547 32582547 T C DYNC1LI1 Silent p.V240V 0.06 TCGA-G2-A3IE-01 3 32814971 32814971 G C CNOT10 Missense_Mutation p.Q761H 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-G2-A3IE-01 3 38080973 38080973 C T DLEC1 Missense_Mutation p.S86L 0.27 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 3 39228574 39228574 C T XIRP1 Missense_Mutation p.G788E 0.49 deleterious(0.01) possibly_damaging(0.558) TCGA-G2-A3IE-01 3 39228623 39228623 C T XIRP1 Missense_Mutation p.E772K 0.41 tolerated(0.18) benign(0.15) TCGA-G2-A3IE-01 3 44763165 44763165 C T ZNF502 Nonsense_Mutation p.Q286* 0.39 TCGA-G2-A3IE-01 3 48310785 48310785 G T ZNF589 3'UTR 0.24 TCGA-G2-A3IE-01 3 49372916 49372916 G A USP4 Missense_Mutation p.S72F 0.41 deleterious(0) probably_damaging(0.964) TCGA-G2-A3IE-01 3 50340340 50340340 G T HYAL1 Silent p.L16L 0.31 TCGA-G2-A3IE-01 3 52417423 52417423 G A DNAH1 Missense_Mutation p.E2655K 0.35 probably_damaging(1) TCGA-G2-A3IE-01 3 52775460 52775460 G A NEK4 Missense_Mutation p.S687L 0.37 deleterious(0) probably_damaging(0.988) TCGA-G2-A3IE-01 3 57312522 57312522 C T ASB14 Silent p.R438R 0.42 TCGA-G2-A3IE-01 3 62189597 62189597 G C PTPRG Missense_Mutation p.D710H 0.27 tolerated(0.09) benign(0.004) TCGA-G2-A3IE-01 3 63542282 63542282 G C SYNPR Missense_Mutation p.L91F 0.33 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 3 78649319 78649319 C G ROBO1 Missense_Mutation p.E1629Q 0.25 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-G2-A3IE-01 3 9935060 9935060 G A JAGN1 Silent p.%3D 0.29 TCGA-G2-A3IE-01 3 9956431 9956431 C G IL17RE Missense_Mutation p.L473V 0.44 deleterious(0.05) benign(0.091) TCGA-G2-A3IE-01 3 9974358 9974360 TCC - IL17RC In_Frame_Del p.L559del 0.31 TCGA-G2-A3IE-01 3 9976094 9976094 C G CRELD1 Intron 0.22 TCGA-G2-A3IE-01 4 158091590 158091590 G A GLRB Missense_Mutation p.E402K 0.71 tolerated(0.19) benign(0.438) TCGA-G2-A3IE-01 4 1941360 1941360 C G WHSC1 Intron 0.18 TCGA-G2-A3IE-01 4 54968002 54968002 G C GSX2 Silent p.G276G 0.28 TCGA-G2-A3IE-01 4 675782 675782 G A MFSD7 Missense_Mutation p.H549Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-G2-A3IE-01 4 68928931 68928931 C G TMPRSS11F Intron 0.36 TCGA-G2-A3IE-01 4 74279157 74279157 C T ALB Silent p.I288I 0.42 TCGA-G2-A3IE-01 4 77917662 77917662 C G SEPT11 Missense_Mutation p.Q38E 0.15 tolerated(0.06) benign(0.012) TCGA-G2-A3IE-01 4 83350483 83350483 C G HNRNPDL Missense_Mutation p.E121Q 0.51 deleterious_low_confidence(0.05) possibly_damaging(0.527) TCGA-G2-A3IE-01 4 87967934 87967934 C T AFF1 Missense_Mutation p.H83Y 0.20 tolerated(0.2) benign(0.245) TCGA-G2-A3IE-01 4 88036278 88036278 C T AFF1 Missense_Mutation p.P765S 0.34 tolerated(0.14) unknown(0) TCGA-G2-A3IE-01 4 980818 980818 G C IDUA 5'UTR 0.35 TCGA-G2-A3IE-01 5 132160501 132160501 C G SHROOM1 Missense_Mutation p.Q349H 0.13 deleterious(0) possibly_damaging(0.707) TCGA-G2-A3IE-01 5 134044472 134044472 C G SEC24A Missense_Mutation p.S874C 0.41 tolerated(0.09) benign(0.051) TCGA-G2-A3IE-01 5 137846256 137846256 C G ETF1 Missense_Mutation p.E361Q 0.12 tolerated(0.1) benign(0.305) TCGA-G2-A3IE-01 5 138269620 138269620 C G CTNNA1 Missense_Mutation p.P855A 0.08 deleterious(0.03) possibly_damaging(0.525) TCGA-G2-A3IE-01 5 140573647 140573647 G A PCDHB10 Missense_Mutation p.A508T 0.49 deleterious_low_confidence(0.04) benign(0.223) TCGA-G2-A3IE-01 5 145317639 145317639 C T SH3RF2 Missense_Mutation p.P50S 0.09 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 5 170736430 170736430 G T TLX3 Missense_Mutation p.D21Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-G2-A3IE-01 5 180338519 180338519 T G BTNL8 Missense_Mutation p.I193S 0.46 tolerated(0.08) benign(0.003) TCGA-G2-A3IE-01 5 37115115 37115115 C A C5orf42 Missense_Mutation p.G3062V 0.57 tolerated(0.15) possibly_damaging(0.545) TCGA-G2-A3IE-01 5 44809390 44809390 T A MRPS30 Missense_Mutation p.F109Y 0.45 deleterious(0.04) probably_damaging(1) TCGA-G2-A3IE-01 5 5465303 5465303 G C KIAA0947 Missense_Mutation p.E1952D 0.20 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 5 79965995 79965995 C A MSH3 Nonsense_Mutation p.S220* 0.50 TCGA-G2-A3IE-01 5 90124866 90124866 G A GPR98 Missense_Mutation p.D5492N 0.47 possibly_damaging(0.811) TCGA-G2-A3IE-01 5 90124959 90124959 G T GPR98 Missense_Mutation p.D5523Y 0.57 probably_damaging(0.953) TCGA-G2-A3IE-01 5 90678672 90678672 C G ARRDC3 Missense_Mutation p.E80Q 0.54 tolerated(0.1) benign(0.248) TCGA-G2-A3IE-01 6 10891745 10891745 G C SYCP2L Splice_Site p.X4_splice 0.09 TCGA-G2-A3IE-01 6 10912908 10912908 G A SYCP2L Missense_Mutation p.M307I 0.18 tolerated(0.06) benign(0.21) TCGA-G2-A3IE-01 6 111696839 111696839 C G REV3L Missense_Mutation p.E907Q 0.12 tolerated(0.07) benign(0.224) TCGA-G2-A3IE-01 6 111696872 111696872 C G REV3L Missense_Mutation p.D896H 0.16 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-G2-A3IE-01 6 116949506 116949506 C T RSPH4A Missense_Mutation p.H546Y 0.23 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 6 130762134 130762134 G - TMEM200A Frame_Shift_Del p.G190Efs*5 0.11 TCGA-G2-A3IE-01 6 138483238 138483238 G A KIAA1244 Silent p.L5L 0.11 TCGA-G2-A3IE-01 6 138655797 138655797 C A KIAA1244 Missense_Mutation p.F1938L 0.19 tolerated(0.07) possibly_damaging(0.574) TCGA-G2-A3IE-01 6 138655808 138655808 C T KIAA1244 Missense_Mutation p.S1942F 0.23 tolerated(0.32) benign(0.382) TCGA-G2-A3IE-01 6 160664743 160664743 G A SLC22A2 Silent p.F380F 0.27 TCGA-G2-A3IE-01 6 165806238 165806240 TTC - PDE10A In_Frame_Del p.K517del 0.20 TCGA-G2-A3IE-01 6 26124406 26124406 G A HIST1H2AC 5'Flank 0.73 TCGA-G2-A3IE-01 6 27925119 27925119 C G OR2B6 Missense_Mutation p.S34C 0.22 tolerated(0.12) probably_damaging(0.95) TCGA-G2-A3IE-01 6 27925668 27925668 C T OR2B6 Missense_Mutation p.S217L 0.20 deleterious(0) probably_damaging(1) TCGA-G2-A3IE-01 6 27925844 27925844 C T OR2B6 Missense_Mutation p.L276F 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-G2-A3IE-01 6 28333556 28333556 G A ZKSCAN3 Missense_Mutation p.E371K 0.05 deleterious(0.05) possibly_damaging(0.739) TCGA-G2-A3IE-01 6 29012734 29012734 G C OR2W1 Missense_Mutation p.F73L 0.06 deleterious(0.05) possibly_damaging(0.459) TCGA-G2-A3IE-01 6 29798548 29798548 G C HLA-G 3'UTR 0.47 TCGA-G2-A3IE-01 6 31516038 31516038 C T ATP6V1G2 5'Flank 0.52 TCGA-G2-A3IE-01 6 31708290 31708290 G A MSH5 Missense_Mutation p.R16K 0.40 tolerated_low_confidence(0.39) benign(0.012) TCGA-G2-A3IE-01 6 31721100 31721100 C T MSH5 Missense_Mutation p.H279Y 0.57 tolerated(0.06) benign(0.01) TCGA-G2-A3IE-01 6 32261066 32261066 C G C6orf10 Missense_Mutation p.E462Q 0.04 tolerated(0.06) benign(0.342) TCGA-G2-A3IE-01 6 32940672 32940672 C G BRD2 5'UTR 0.62 TCGA-G2-A3IE-01 6 33393617 33393617 C G SYNGAP1 Missense_Mutation p.R78G 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-G2-A3IE-01 6 33408987 33408987 G T SYNGAP1 Nonsense_Mutation p.E651* 0.60 TCGA-G2-A3IE-01 6 34059676 34059676 C T GRM4 Silent p.Q240Q 0.15 TCGA-G2-A3IE-01 6 34664291 34664291 C T C6orf106 Silent p.E30E 0.19 TCGA-G2-A3IE-01 6 348771 348771 T C DUSP22 Silent p.Y146Y 0.04 TCGA-G2-A3IE-01 6 34985689 34985689 C T ANKS1A Silent p.R621R 0.10 TCGA-G2-A3IE-01 6 35211828 35211828 G C SCUBE3 Silent p.R720R 0.29 TCGA-G2-A3IE-01 6 35213161 35213161 C A SCUBE3 Missense_Mutation p.S853Y 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-G2-A3IE-01 6 40400429 40400429 C T LRFN2 Missense_Mutation p.E142K 0.46 tolerated(0.63) benign(0.009) TCGA-G2-A3IE-01 6 42626436 42626436 G A UBR2 Missense_Mutation p.R1039K 0.24 tolerated(0.38) benign(0.109) TCGA-G2-A3IE-01 6 42796877 42796877 C T GLTSCR1L Missense_Mutation p.S269F 0.43 deleterious(0.02) probably_damaging(0.931) TCGA-G2-A3IE-01 6 43492227 43492227 G C XPO5 Silent p.L1153L 0.22 TCGA-G2-A3IE-01 6 4943831 4943831 C T CDYL Silent p.V391V 0.07 TCGA-G2-A3IE-01 6 6224981 6224981 C T F13A1 Missense_Mutation p.R304Q 0.34 tolerated(0.31) benign(0.001) TCGA-G2-A3IE-01 6 6589066 6589066 T A LY86 Nonsense_Mutation p.C33* 0.11 TCGA-G2-A3IE-01 6 86349960 86349963 TCCT - SYNCRIP Frame_Shift_Del p.K117Nfs*20 0.14 TCGA-G2-A3IE-01 7 100552667 100552667 C T MUC3A Missense_Mutation p.S473L 0.24 tolerated(0.21) possibly_damaging(0.783) TCGA-G2-A3IE-01 7 100678824 100678824 C T MUC17 Missense_Mutation p.S1376L 0.30 unknown(0) TCGA-G2-A3IE-01 7 103155835 103155835 C T RELN Missense_Mutation p.R2639H 0.23 deleterious(0) probably_damaging(0.994) TCGA-G2-A3IE-01 7 105752610 105752610 G C SYPL1 Silent p.L33L 0.36 TCGA-G2-A3IE-01 7 105752622 105752622 G C SYPL1 Silent p.L29L 0.36 TCGA-G2-A3IE-01 7 122769443 122769443 G A SLC13A1 Missense_Mutation p.P342L 0.43 deleterious(0) probably_damaging(0.955) TCGA-G2-A3IE-01 7 139661804 139661804 C T TBXAS1 Silent p.D349D 0.45 TCGA-G2-A3IE-01 7 139799789 139799789 T C KDM7A Missense_Mutation p.N558S 0.33 tolerated(0.07) probably_damaging(0.913) TCGA-G2-A3IE-01 7 142609893 142609893 C G TRPV5 Missense_Mutation p.E515Q 0.32 tolerated(0.32) possibly_damaging(0.458) TCGA-G2-A3IE-01 7 148921496 148921496 C G ZNF282 Missense_Mutation p.N591K 0.22 tolerated(0.29) possibly_damaging(0.635) TCGA-G2-A3IE-01 7 148921658 148921658 C G ZNF282 Silent p.L645L 0.46 TCGA-G2-A3IE-01 7 149489754 149489754 C G SSPO RNA 0.35 TCGA-G2-A3IE-01 7 150068792 150068792 C T REPIN1 Silent p.F211F 0.53 TCGA-G2-A3IE-01 7 151851456 151851456 C G KMT2C Missense_Mutation p.G4012A 0.22 probably_damaging(0.999) TCGA-G2-A3IE-01 7 17890577 17890577 G C SNX13 Missense_Mutation p.S283C 0.22 deleterious(0.04) benign(0.053) TCGA-G2-A3IE-01 7 27183260 27183260 C G HOXA5 5'UTR 0.41 TCGA-G2-A3IE-01 7 2978460 2978460 C T CARD11 Silent p.G290G 0.21 TCGA-G2-A3IE-01 7 33407465 33407465 A C BBS9 Missense_Mutation p.K594Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-G2-A3IE-01 7 48318544 48318544 G T ABCA13 Nonsense_Mutation p.E2585* 0.19 TCGA-G2-A3IE-01 7 50513083 50513083 G C FIGNL1 Missense_Mutation p.Q635E 0.27 tolerated(0.19) benign(0.075) TCGA-G2-A3IE-01 7 55750447 55750447 C G RNU6-389P 5'Flank 0.09 TCGA-G2-A3IE-01 7 71130439 71130439 G A WBSCR17 Missense_Mutation p.R375Q 0.06 deleterious(0.03) possibly_damaging(0.712) TCGA-G2-A3IE-01 7 7421178 7421178 C T COL28A1 Silent p.Q734Q 0.33 TCGA-G2-A3IE-01 7 7516808 7516808 G A COL28A1 Missense_Mutation p.P390S 0.23 tolerated(0.08) benign(0.425) TCGA-G2-A3IE-01 7 86794344 86794344 C A DMTF1 Silent p.L29L 0.23 TCGA-G2-A3IE-01 7 87150136 87150136 C A ABCB1 Missense_Mutation p.Q914H 0.35 deleterious(0.01) benign(0.035) TCGA-G2-A3IE-01 7 87174162 87174162 T C ABCB1 Missense_Mutation p.K681E 0.09 tolerated(0.45) benign(0.001) TCGA-G2-A3IE-01 7 87180046 87180046 C G ABCB1 Missense_Mutation p.D370H 0.28 deleterious(0) benign(0.398) TCGA-G2-A3IE-01 7 89912334 89912334 G C C7orf63 Missense_Mutation p.D501H 0.39 deleterious(0) probably_damaging(0.996) TCGA-G2-A3IE-01 7 99097298 99097298 C T ZNF394 Missense_Mutation p.R140Q 0.28 tolerated(0.3) benign(0.008) TCGA-G2-A3IE-01 8 121426333 121426333 G C MRPL13 Missense_Mutation p.L138V 0.21 deleterious(0.05) benign(0.176) TCGA-G2-A3IE-01 8 144885702 144885702 G A SCRIB Missense_Mutation p.R1152C 0.38 benign(0.019) TCGA-G2-A3IE-01 8 145736235 145736235 C G MFSD3 Silent p.V338V 0.25 TCGA-G2-A3IE-01 8 145979132 145979132 C T ZNF251 Silent p.K71K 0.36 TCGA-G2-A3IE-01 8 21903643 21903643 C G FGF17 Missense_Mutation p.P31A 0.56 tolerated(0.41) possibly_damaging(0.844) TCGA-G2-A3IE-01 8 26365475 26365475 G A PNMA2 Missense_Mutation p.S266L 0.38 deleterious(0.03) benign(0.04) TCGA-G2-A3IE-01 8 29120564 29120564 G A KIF13B 5'UTR 0.64 TCGA-G2-A3IE-01 8 32621582 32621582 C A NRG1 Missense_Mutation p.Q534K 0.30 deleterious(0.01) benign(0.356) TCGA-G2-A3IE-01 8 37603132 37603132 G A ERLIN2 Intron 0.57 TCGA-G2-A3IE-01 8 38250110 38250110 G C LETM2 Intron 0.14 TCGA-G2-A3IE-01 8 42176072 42176072 C G IKBKB Missense_Mutation p.Q415E 0.33 deleterious(0.03) benign(0.184) TCGA-G2-A3IE-01 8 56436795 56436795 G C XKR4 3'UTR 0.23 TCGA-G2-A3IE-01 8 68044264 68044264 G A CSPP1 Silent p.P587P 0.30 TCGA-G2-A3IE-01 8 80992661 80992661 C A TPD52 Nonsense_Mutation p.E10* 0.32 TCGA-G2-A3IE-01 8 96281381 96281381 C G C8orf37 Missense_Mutation p.E13Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-G2-A3IE-01 8 97269316 97269316 G C MTERFD1 Missense_Mutation p.P121A 0.17 tolerated(0.79) benign(0.24) TCGA-G2-A3IE-01 9 107521388 107521388 G C NIPSNAP3A Missense_Mutation p.E201D 0.31 tolerated(0.21) benign(0.042) TCGA-G2-A3IE-01 9 107535355 107535355 T C NIPSNAP3B 3'UTR 0.35 TCGA-G2-A3IE-01 9 108457020 108457020 C G TMEM38B Missense_Mutation p.L27V 0.30 tolerated(0.22) benign(0.012) TCGA-G2-A3IE-01 9 112900730 112900730 G A PALM2-AKAP2 Missense_Mutation p.R969K 0.18 tolerated(0.43) benign(0.075) TCGA-G2-A3IE-01 9 115959352 115959352 C T FKBP15 Missense_Mutation p.E242K 0.23 deleterious(0.01) probably_damaging(0.955) TCGA-G2-A3IE-01 9 117062947 117062947 C T COL27A1 Missense_Mutation p.R1561W 0.25 unknown(0) TCGA-G2-A3IE-01 9 117910 117910 G A FOXD4 Silent p.I70I 0.09 TCGA-G2-A3IE-01 9 125611902 125611902 C T RC3H2 3'UTR 0.20 TCGA-G2-A3IE-01 9 131340465 131340465 G T SPTAN1 Nonsense_Mutation p.E388* 0.35 TCGA-G2-A3IE-01 9 132658267 132658267 C T FNBP1 Missense_Mutation p.E566K 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-G2-A3IE-01 9 133948634 133948634 G C LAMC3 Missense_Mutation p.E1140D 0.31 tolerated(0.47) benign(0.002) TCGA-G2-A3IE-01 9 136555522 136555522 G A SARDH Silent p.I683I 0.27 TCGA-G2-A3IE-01 9 18928110 18928110 G A FAM154A Silent p.S455S 0.51 TCGA-G2-A3IE-01 9 2110327 2110327 C G SMARCA2 Missense_Mutation p.F1122L 0.42 benign(0.418) TCGA-G2-A3IE-01 9 32487490 32487493 CTTG - DDX58 Frame_Shift_Del p.Q451Lfs*24 0.14 TCGA-G2-A3IE-01 9 39178358 39178358 C G CNTNAP3 Splice_Site p.X180_splice 0.48 TCGA-G2-A3IE-01 9 713382 713383 TA - KANK1 Frame_Shift_Del p.I873Qfs*10 0.23 TCGA-G2-A3IE-01 9 74838100 74838100 G A GDA Missense_Mutation p.G224D 0.10 tolerated(0.61) benign(0.054) TCGA-G2-A3IE-01 9 79324197 79324197 G C PRUNE2 Nonsense_Mutation p.S998* 0.47 TCGA-G2-A3IE-01 9 86955491 86955491 G A SLC28A3 Nonsense_Mutation p.Q20* 0.39 TCGA-G2-A3IE-01 9 96259828 96259828 C T FAM120A Nonsense_Mutation p.Q294* 0.60 TCGA-G2-A3IE-01 X 123657408 123657408 C G TENM1 Missense_Mutation p.E947Q 0.88 tolerated(1) benign(0.002) TCGA-G2-A3IE-01 X 44894229 44894232 AAGT - KDM6A Splice_Site p.X207_splice 0.10 TCGA-G2-A3IE-01 X 46913959 46913959 G C JADE3 Missense_Mutation p.V458L 0.60 tolerated(0.5) benign(0.007) TCGA-G2-A3IE-01 X 46913971 46913971 G T JADE3 Nonsense_Mutation p.E462* 0.60 TCGA-G2-A3IE-01 X 54048789 54048789 G A PHF8 Missense_Mutation p.R102C 0.73 deleterious(0) benign(0.37) TCGA-G2-A3IE-01 X 76814231 76814231 G A ATRX Missense_Mutation p.S2138F 0.65 probably_damaging(0.986) TCGA-G2-A3VY-01 10 11047353 11047353 G T RP1-251M9.3 3'Flank 0.15 TCGA-G2-A3VY-01 10 124008642 124008642 G A TACC2 Silent p.L2877L 0.38 TCGA-G2-A3VY-01 10 124175485 124175485 C G PLEKHA1 Missense_Mutation p.I193M 0.94 deleterious(0) probably_damaging(0.986) TCGA-G2-A3VY-01 10 124591695 124591695 C T CUZD1 3'UTR 0.46 TCGA-G2-A3VY-01 10 13698952 13698952 G C FRMD4A Missense_Mutation p.F879L 0.35 tolerated(0.56) benign(0.033) TCGA-G2-A3VY-01 10 14909867 14909867 G C HSPA14 Missense_Mutation p.D447H 0.18 tolerated(0.12) benign(0.213) TCGA-G2-A3VY-01 10 14995952 14995952 C G DCLRE1C Missense_Mutation p.D20H 0.19 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 10 15154865 15154865 G C NMT2 Nonsense_Mutation p.S423* 0.17 TCGA-G2-A3VY-01 10 21462805 21462805 C T NEBL-AS1 5'Flank 0.73 TCGA-G2-A3VY-01 10 24669900 24669900 G C KIAA1217 Missense_Mutation p.E153Q 0.53 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 10 25888216 25888216 G C GPR158 3'UTR 0.60 TCGA-G2-A3VY-01 10 72192594 72192594 C T NODAL 3'UTR 0.67 TCGA-G2-A3VY-01 10 75011600 75011600 G C MRPS16 Silent p.L65L 0.67 TCGA-G2-A3VY-01 10 7786827 7786827 C G ITIH2 Missense_Mutation p.L828V 0.11 deleterious(0) probably_damaging(0.99) TCGA-G2-A3VY-01 10 89725134 89725134 G A PTEN Missense_Mutation p.E373K 0.34 tolerated(0.08) probably_damaging(0.993) TCGA-G2-A3VY-01 10 93699793 93699793 G C BTAF1 Missense_Mutation p.E75Q 0.33 tolerated(0.67) benign(0.004) TCGA-G2-A3VY-01 10 95400704 95400704 G T PDE6C Missense_Mutation p.D589Y 0.33 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 10 96162370 96162370 G A TBC1D12 5'UTR 1.00 TCGA-G2-A3VY-01 10 96317928 96317928 A T HELLS Missense_Mutation p.K103N 0.44 deleterious(0.03) possibly_damaging(0.889) TCGA-G2-A3VY-01 10 98383279 98383279 C A PIK3AP1 Missense_Mutation p.S562I 0.41 deleterious(0.04) benign(0.146) TCGA-G2-A3VY-01 11 105775959 105775959 G C GRIA4 Missense_Mutation p.D364H 0.19 deleterious(0) probably_damaging(0.978) TCGA-G2-A3VY-01 11 108032032 108032032 C T NPAT Missense_Mutation p.D1261N 0.51 tolerated(0.15) benign(0.021) TCGA-G2-A3VY-01 11 108384109 108384109 C T EXPH5 Missense_Mutation p.E709K 0.29 tolerated(0.05) benign(0.025) TCGA-G2-A3VY-01 11 113286260 113286260 G A DRD2 Silent p.F202F 0.39 TCGA-G2-A3VY-01 11 113661477 113661477 A C ATF4P4 RNA 0.21 TCGA-G2-A3VY-01 11 117332172 117332172 C T DSCAML1 Missense_Mutation p.D1196N 0.37 tolerated(0.06) benign(0.222) TCGA-G2-A3VY-01 11 118071280 118071280 G T AMICA1 Missense_Mutation p.Q274K 0.39 tolerated(0.08) benign(0.227) TCGA-G2-A3VY-01 11 118363895 118363895 G A KMT2A Missense_Mutation p.D1710N 0.14 probably_damaging(0.995) TCGA-G2-A3VY-01 11 118923444 118923444 C G HYOU1 Missense_Mutation p.D298H 0.26 deleterious(0) probably_damaging(0.997) TCGA-G2-A3VY-01 11 120292558 120292558 C G ARHGEF12 Missense_Mutation p.I115M 0.16 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 11 129999042 129999042 G A APLP2 Missense_Mutation p.D466N 0.61 tolerated(0.13) possibly_damaging(0.822) TCGA-G2-A3VY-01 11 18555896 18555896 G A UEVLD Missense_Mutation p.S410F 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-G2-A3VY-01 11 18637593 18637593 G C SPTY2D1 Silent p.L76L 0.45 TCGA-G2-A3VY-01 11 24998163 24998163 A T LUZP2 Missense_Mutation p.Q183H 0.20 tolerated(0.13) possibly_damaging(0.533) TCGA-G2-A3VY-01 11 32632777 32632777 C G CCDC73 Missense_Mutation p.L977F 0.25 deleterious(0.01) probably_damaging(0.923) TCGA-G2-A3VY-01 11 3680949 3680949 C A ART1 Missense_Mutation p.T67K 0.67 deleterious(0.01) possibly_damaging(0.87) TCGA-G2-A3VY-01 11 4389102 4389102 G C OR52B4 Missense_Mutation p.L142V 0.30 tolerated(1) benign(0.02) TCGA-G2-A3VY-01 11 45246160 45246160 G C PRDM11 Missense_Mutation p.E379Q 0.38 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-G2-A3VY-01 11 56344278 56344278 C T OR5M10 Missense_Mutation p.G307E 0.21 tolerated(0.66) benign(0.002) TCGA-G2-A3VY-01 11 57369563 57369592 CTTCACCTGTGTCCACCAGGCCCTGAAGGG - SERPING1 In_Frame_Del p.C205_T214del 0.13 TCGA-G2-A3VY-01 11 59368846 59368846 G A OSBP Missense_Mutation p.S345F 0.23 deleterious(0.01) possibly_damaging(0.553) TCGA-G2-A3VY-01 11 59940431 59940431 G A MS4A6A 3'UTR 0.41 TCGA-G2-A3VY-01 11 61488339 61488339 A C DAGLA Missense_Mutation p.Q95P 0.32 tolerated(0.5) probably_damaging(0.985) TCGA-G2-A3VY-01 11 62289440 62289440 G A AHNAK Missense_Mutation p.S4150F 0.31 probably_damaging(0.968) TCGA-G2-A3VY-01 11 62348892 62348892 G C TUT1 Silent p.A223A 0.18 TCGA-G2-A3VY-01 11 62561884 62561884 C G NXF1 Missense_Mutation p.V536L 0.16 tolerated(0.09) benign(0.217) TCGA-G2-A3VY-01 11 62760912 62760912 C T SLC22A8 Missense_Mutation p.E505K 0.29 deleterious(0.05) benign(0.3) TCGA-G2-A3VY-01 11 64026396 64026396 C G PLCB3 Silent p.S431S 0.26 TCGA-G2-A3VY-01 11 64457929 64457929 G A NRXN2 Silent p.S266S 0.58 TCGA-G2-A3VY-01 11 64673042 64673042 G T ATG2A Missense_Mutation p.L1153M 0.73 tolerated(0.21) benign(0.418) TCGA-G2-A3VY-01 11 64876860 64876860 G T VPS51 Missense_Mutation p.A518S 0.12 tolerated(1) benign(0.004) TCGA-G2-A3VY-01 11 64895935 64895935 C T SYVN1 Silent p.E591E 0.35 TCGA-G2-A3VY-01 11 65272183 65272183 G A MALAT1 RNA 0.17 TCGA-G2-A3VY-01 11 65360568 65360568 C T KCNK7 Missense_Mutation p.E278K 0.20 deleterious(0.03) possibly_damaging(0.735) TCGA-G2-A3VY-01 11 65360906 65360906 C G KCNK7 Intron 0.26 TCGA-G2-A3VY-01 11 66458983 66458983 G C SPTBN2 Silent p.L1779L 0.22 TCGA-G2-A3VY-01 11 66460498 66460498 G C SPTBN2 Missense_Mutation p.T1643S 0.27 tolerated(0.21) possibly_damaging(0.566) TCGA-G2-A3VY-01 11 66625620 66625620 C T LRFN4 Silent p.I135I 0.79 TCGA-G2-A3VY-01 11 67207901 67207901 C G CORO1B Missense_Mutation p.E256Q 0.30 tolerated(0.26) benign(0.018) TCGA-G2-A3VY-01 11 72412771 72412771 G A ARAP1 Missense_Mutation p.P742L 0.27 deleterious(0) probably_damaging(0.992) TCGA-G2-A3VY-01 11 74547165 74547165 C G RNF169 Missense_Mutation p.S506C 0.29 deleterious(0.01) benign(0.017) TCGA-G2-A3VY-01 11 75431020 75431020 C A MOGAT2 Intron 0.24 TCGA-G2-A3VY-01 11 8120357 8120357 C T TUB Nonsense_Mutation p.Q406* 0.20 TCGA-G2-A3VY-01 11 88241803 88241803 G A GRM5 Missense_Mutation p.T1199I 0.29 deleterious_low_confidence(0.01) benign(0.157) TCGA-G2-A3VY-01 11 89133452 89133452 G A NOX4 Silent p.V314V 0.16 TCGA-G2-A3VY-01 11 89537373 89537373 C G TRIM49 Missense_Mutation p.E89Q 0.16 deleterious(0.01) possibly_damaging(0.566) TCGA-G2-A3VY-01 11 93480516 93480516 G C C11orf54 5'UTR 0.38 TCGA-G2-A3VY-01 11 9450610 9450610 G A IPO7 Silent p.V486V 0.53 TCGA-G2-A3VY-01 12 101776903 101776903 G C UTP20 Missense_Mutation p.D2581H 0.40 tolerated(0.22) possibly_damaging(0.503) TCGA-G2-A3VY-01 12 102433677 102433677 C A CCDC53 Missense_Mutation p.R135I 0.45 deleterious(0) probably_damaging(0.981) TCGA-G2-A3VY-01 12 104049332 104049332 C A STAB2 Silent p.G569G 0.24 TCGA-G2-A3VY-01 12 104142822 104142822 G A STAB2 Missense_Mutation p.S2109N 0.29 tolerated(0.11) possibly_damaging(0.532) TCGA-G2-A3VY-01 12 105198909 105198909 G C SLC41A2 3'UTR 0.17 TCGA-G2-A3VY-01 12 107209010 107209010 G C RIC8B Missense_Mutation p.E223D 0.38 tolerated(0.15) benign(0.075) TCGA-G2-A3VY-01 12 108603968 108603968 G T WSCD2 Missense_Mutation p.V190L 0.11 tolerated(0.07) benign(0.029) TCGA-G2-A3VY-01 12 118476129 118476129 G C WSB2 Missense_Mutation p.D208E 0.37 deleterious(0) possibly_damaging(0.698) TCGA-G2-A3VY-01 12 119559877 119559877 C A SRRM4 Missense_Mutation p.S156Y 0.30 deleterious_low_confidence(0) unknown(0) TCGA-G2-A3VY-01 12 120576567 120576567 C T GCN1L1 Missense_Mutation p.E2030K 0.21 possibly_damaging(0.736) TCGA-G2-A3VY-01 12 120759997 120759997 C A PLA2G1B Nonstop_Mutation p.*149Lext*20 0.25 TCGA-G2-A3VY-01 12 121018922 121018922 G A POP5 Silent p.F53F 0.13 TCGA-G2-A3VY-01 12 122392093 122392093 C T WDR66 Missense_Mutation p.S463L 0.32 deleterious(0) possibly_damaging(0.564) TCGA-G2-A3VY-01 12 122750907 122750907 C T VPS33A Missense_Mutation p.E17K 0.15 deleterious(0.02) possibly_damaging(0.476) TCGA-G2-A3VY-01 12 122825453 122825453 G C CLIP1 Silent p.L766L 0.32 TCGA-G2-A3VY-01 12 124315201 124315201 C A DNAH10 Silent p.L1382L 0.44 TCGA-G2-A3VY-01 12 125284769 125284769 G T SCARB1 Silent p.S343S 0.23 TCGA-G2-A3VY-01 12 12588569 12588569 G C LOH12CR1 Missense_Mutation p.L70F 0.19 deleterious(0.02) benign(0.395) TCGA-G2-A3VY-01 12 22797269 22797269 C G ETNK1 Intron 0.39 TCGA-G2-A3VY-01 12 25260856 25260856 G C LRMP Missense_Mutation p.L454F 0.24 tolerated(0.14) benign(0.211) TCGA-G2-A3VY-01 12 26208293 26208293 G C RASSF8 Missense_Mutation p.W6S 0.05 deleterious(0) benign(0.226) TCGA-G2-A3VY-01 12 26217937 26217937 G C RASSF8 Missense_Mutation p.E204Q 0.11 tolerated(0.06) benign(0.127) TCGA-G2-A3VY-01 12 27455101 27455101 G C STK38L Missense_Mutation p.E56Q 0.38 tolerated(0.16) benign(0.06) TCGA-G2-A3VY-01 12 27788022 27788022 C G PPFIBP1 Missense_Mutation p.L82V 0.30 tolerated(0.11) probably_damaging(0.983) TCGA-G2-A3VY-01 12 31435583 31435583 C T FAM60A 3'UTR 0.21 TCGA-G2-A3VY-01 12 44180267 44180267 G C IRAK4 Missense_Mutation p.M418I 0.19 tolerated(0.1) benign(0.092) TCGA-G2-A3VY-01 12 442723 442723 G C KDM5A Missense_Mutation p.S528C 0.32 deleterious(0) probably_damaging(0.913) TCGA-G2-A3VY-01 12 46764968 46764968 G A SLC38A2 Silent p.L37L 0.06 TCGA-G2-A3VY-01 12 47472633 47472633 G T AMIGO2 Silent p.I51I 0.35 TCGA-G2-A3VY-01 12 48527095 48527095 C G PFKM Intron 0.26 TCGA-G2-A3VY-01 12 49226345 49226345 G A DDX23 Silent p.F605F 0.17 TCGA-G2-A3VY-01 12 49424126 49424126 C T KMT2D Missense_Mutation p.E4646K 0.38 unknown(0) TCGA-G2-A3VY-01 12 50195682 50195682 C T NCKAP5L Silent p.L100L 0.18 TCGA-G2-A3VY-01 12 50598415 50598415 G C LIMA1 Missense_Mutation p.L262V 0.46 deleterious(0) probably_damaging(0.96) TCGA-G2-A3VY-01 12 52774948 52774948 G A KRT84 Silent p.N373N 0.21 TCGA-G2-A3VY-01 12 52776813 52776813 C G KRT84 Missense_Mutation p.E264D 0.22 deleterious(0) probably_damaging(0.994) TCGA-G2-A3VY-01 12 53204577 53204577 C T KRT4 Missense_Mutation p.R234H 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-G2-A3VY-01 12 53723022 53723022 A T SP7 Missense_Mutation p.F68L 0.17 tolerated(0.64) benign(0.248) TCGA-G2-A3VY-01 12 53918472 53918472 C T ATF7 Missense_Mutation p.R334Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 12 56188173 56188173 T C SARNP Splice_Site p.X126_splice 0.23 TCGA-G2-A3VY-01 12 56215880 56215880 A G DNAJC14 Missense_Mutation p.F664L 0.25 deleterious(0) probably_damaging(0.99) TCGA-G2-A3VY-01 12 56330273 56330273 G C DGKA 5'UTR 0.14 TCGA-G2-A3VY-01 12 56351734 56351734 G C PMEL Missense_Mutation p.H202D 0.38 tolerated(0.1) benign(0.444) TCGA-G2-A3VY-01 12 56351767 56351767 G A PMEL Missense_Mutation p.R191C 0.34 tolerated(0.1) probably_damaging(0.969) TCGA-G2-A3VY-01 12 56510419 56510419 C T RPL41 5'UTR 0.17 TCGA-G2-A3VY-01 12 56565672 56565672 C T SMARCC2 Missense_Mutation p.G628E 0.46 deleterious(0) probably_damaging(0.982) TCGA-G2-A3VY-01 12 56817644 56817644 G C TIMELESS Missense_Mutation p.Q635E 0.38 tolerated(0.96) benign(0.001) TCGA-G2-A3VY-01 12 56818562 56818562 G C TIMELESS Missense_Mutation p.L618V 0.38 deleterious(0) probably_damaging(0.947) TCGA-G2-A3VY-01 12 64061860 64061860 G C DPY19L2 Missense_Mutation p.S105C 0.47 deleterious(0) possibly_damaging(0.682) TCGA-G2-A3VY-01 12 65702331 65702331 C T MSRB3 Intron 0.16 TCGA-G2-A3VY-01 12 66698778 66698778 C G HELB Nonsense_Mutation p.S152* 0.29 TCGA-G2-A3VY-01 12 6672897 6672897 C G NOP2 Missense_Mutation p.E224Q 0.13 deleterious(0.03) benign(0.116) TCGA-G2-A3VY-01 12 6761554 6761554 G C ING4 Silent p.T177T 0.19 TCGA-G2-A3VY-01 12 69991012 69991012 G T CCT2 Missense_Mutation p.M353I 0.44 tolerated(0.28) benign(0.011) TCGA-G2-A3VY-01 12 72017272 72017272 G C ZFC3H1 Missense_Mutation p.L1538V 0.05 tolerated(0.11) probably_damaging(0.994) TCGA-G2-A3VY-01 12 76740913 76740913 C G BBS10 Missense_Mutation p.Q284H 0.43 deleterious(0) benign(0.06) TCGA-G2-A3VY-01 12 79837968 79837968 A C SYT1 Silent p.V348V 0.12 TCGA-G2-A3VY-01 12 80266706 80266706 C G PPP1R12A Missense_Mutation p.D84H 0.11 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 12 81647169 81647169 C G ACSS3 Silent p.L601L 0.18 TCGA-G2-A3VY-01 12 85449499 85449499 C A LRRIQ1 Missense_Mutation p.Q310K 0.15 tolerated(0.54) benign(0.1) TCGA-G2-A3VY-01 12 85517896 85517896 G A LRRIQ1 Silent p.K1202K 0.17 TCGA-G2-A3VY-01 12 86374166 86374166 C A MGAT4C Missense_Mutation p.G113V 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-G2-A3VY-01 12 9229519 9229519 C T A2M Missense_Mutation p.R1122H 0.34 tolerated(0.05) benign(0.081) TCGA-G2-A3VY-01 12 9305844 9305844 C T PZP Silent p.Q1290Q 0.42 TCGA-G2-A3VY-01 12 95397464 95397464 C T NDUFA12 5'UTR 0.38 TCGA-G2-A3VY-01 12 97331111 97331111 C G NEDD1 Missense_Mutation p.L360V 0.14 tolerated(0.7) benign(0.031) TCGA-G2-A3VY-01 13 100518572 100518572 T C CLYBL Missense_Mutation p.L238P 0.23 deleterious(0) probably_damaging(0.995) TCGA-G2-A3VY-01 13 102051408 102051408 G A NALCN Silent p.L24L 0.36 TCGA-G2-A3VY-01 13 103718286 103718286 C T SLC10A2 Missense_Mutation p.C105Y 0.91 deleterious(0) probably_damaging(0.992) TCGA-G2-A3VY-01 13 113333628 113333628 G A C13orf35 5'UTR 0.32 TCGA-G2-A3VY-01 13 20006667 20006667 G C TPTE2 Missense_Mutation p.L390V 0.19 tolerated(0.09) benign(0.007) TCGA-G2-A3VY-01 13 23930039 23930039 T C SACS Missense_Mutation p.K238E 0.96 benign(0.006) TCGA-G2-A3VY-01 13 25745097 25745097 C T AMER2 Missense_Mutation p.G221R 0.88 tolerated(0.47) probably_damaging(0.918) TCGA-G2-A3VY-01 13 41766848 41766848 G A KBTBD7 Nonsense_Mutation p.Q516* 0.89 TCGA-G2-A3VY-01 13 46946326 46946326 G A KIAA0226L Silent p.L95L 0.24 TCGA-G2-A3VY-01 13 58207298 58207298 G A PCDH17 Silent p.Q206Q 0.39 TCGA-G2-A3VY-01 13 60384919 60384919 C T DIAPH3 Intron 1.00 TCGA-G2-A3VY-01 13 97639537 97639537 G A OXGR1 Silent p.I159I 0.08 TCGA-G2-A3VY-01 13 98043621 98043621 C T MBNL2 3'UTR 0.34 TCGA-G2-A3VY-01 13 99537285 99537285 G A DOCK9 Silent p.I774I 0.50 TCGA-G2-A3VY-01 14 101396266 101396266 A G SNORD113-3 RNA 0.62 TCGA-G2-A3VY-01 14 104552129 104552129 G T ASPG Nonsense_Mutation p.E8* 0.56 TCGA-G2-A3VY-01 14 105410361 105410361 C G AHNAK2 Missense_Mutation p.K3809N 0.31 probably_damaging(0.991) TCGA-G2-A3VY-01 14 105954549 105954549 G A CRIP1 Silent p.L29L 0.36 TCGA-G2-A3VY-01 14 20856168 20856168 G C TEP1 Missense_Mutation p.D860E 0.42 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 14 24619469 24619469 G A RNF31 Missense_Mutation p.E337K 0.92 tolerated(0.25) benign(0.092) TCGA-G2-A3VY-01 14 24619594 24619594 G A RNF31 Silent p.L378L 0.93 TCGA-G2-A3VY-01 14 24620038 24620038 G A RNF31 Missense_Mutation p.E477K 0.97 deleterious(0.01) possibly_damaging(0.533) TCGA-G2-A3VY-01 14 29237037 29237037 C G FOXG1 Missense_Mutation p.F184L 0.95 deleterious(0.01) probably_damaging(0.994) TCGA-G2-A3VY-01 14 31598292 31598292 G C HECTD1 Missense_Mutation p.L1429V 0.38 tolerated_low_confidence(0.28) benign(0.01) TCGA-G2-A3VY-01 14 33004894 33004908 GCTTCGAGTCTCAGT - AKAP6 In_Frame_Del p.R155_L159del 0.52 TCGA-G2-A3VY-01 14 45668041 45668041 G A FANCM Missense_Mutation p.E1971K 0.86 deleterious(0.01) benign(0.33) TCGA-G2-A3VY-01 14 59950883 59950883 C T L3HYPDH Missense_Mutation p.R51Q 0.40 deleterious(0) benign(0.272) TCGA-G2-A3VY-01 14 61995799 61995799 G C PRKCH Silent p.L480L 0.95 TCGA-G2-A3VY-01 14 64467418 64467418 C T SYNE2 Nonsense_Mutation p.Q1207* 0.37 TCGA-G2-A3VY-01 14 64694241 64694241 G C SYNE2 3'Flank 0.10 TCGA-G2-A3VY-01 14 74514682 74514682 C T CCDC176 Nonsense_Mutation p.Q233* 0.41 TCGA-G2-A3VY-01 14 75130693 75130693 G A AREL1 Nonsense_Mutation p.Q760* 0.29 TCGA-G2-A3VY-01 14 77942212 77942212 G C ISM2 Missense_Mutation p.S481C 0.11 deleterious(0.03) probably_damaging(0.963) TCGA-G2-A3VY-01 14 80677657 80677657 G A DIO2 Silent p.R53R 0.50 TCGA-G2-A3VY-01 14 89817116 89817116 C G FOXN3 Missense_Mutation p.E194Q 0.32 deleterious(0) probably_damaging(0.926) TCGA-G2-A3VY-01 14 91367073 91367073 G C RPS6KA5 Missense_Mutation p.S376C 0.39 deleterious(0) probably_damaging(0.989) TCGA-G2-A3VY-01 14 92253884 92253884 G T TC2N Missense_Mutation p.P379T 0.19 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 14 92253914 92253914 G C TC2N Missense_Mutation p.Q369E 0.22 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 14 95080891 95080891 A C SERPINA3 Missense_Mutation p.N38T 0.28 tolerated(0.1) benign(0.053) TCGA-G2-A3VY-01 14 95570291 95570291 G C DICER1 Missense_Mutation p.Q1148E 0.66 tolerated_low_confidence(0.91) benign(0.004) TCGA-G2-A3VY-01 14 99182494 99182494 G T C14orf177 5'UTR 0.19 TCGA-G2-A3VY-01 14 99959910 99959910 C T CCNK Missense_Mutation p.S86F 0.48 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 15 101872078 101872078 C A PCSK6 Nonsense_Mutation p.E672* 0.08 TCGA-G2-A3VY-01 15 21051181 21051181 C T POTEB2 Missense_Mutation p.E427K 0.10 tolerated(0.1) benign(0) TCGA-G2-A3VY-01 15 22993125 22993125 C T CYFIP1 Silent p.I1004I 0.65 TCGA-G2-A3VY-01 15 25959011 25959011 C T ATP10A Silent p.L718L 0.08 TCGA-G2-A3VY-01 15 28377404 28377404 C G HERC2 Missense_Mutation p.E4138Q 0.16 possibly_damaging(0.548) TCGA-G2-A3VY-01 15 31352839 31352839 C G TRPM1 Missense_Mutation p.V408L 0.33 tolerated(0.74) benign(0.006) TCGA-G2-A3VY-01 15 33961642 33961642 C T RYR3 Missense_Mutation p.L1903F 0.61 possibly_damaging(0.533) TCGA-G2-A3VY-01 15 33988667 33988667 G A RYR3 Missense_Mutation p.E2037K 0.54 probably_damaging(0.956) TCGA-G2-A3VY-01 15 34113731 34113731 G A RYR3 Missense_Mutation p.M3641I 0.28 benign(0.004) TCGA-G2-A3VY-01 15 34354863 34354863 G A CHRM5 5'UTR 0.51 TCGA-G2-A3VY-01 15 34647761 34647761 C T NUTM1 Nonsense_Mutation p.Q490* 0.26 TCGA-G2-A3VY-01 15 38614540 38614540 G T SPRED1 Silent p.T102T 0.18 TCGA-G2-A3VY-01 15 40632197 40632197 G A C15orf52 Missense_Mutation p.S55F 0.67 deleterious(0) possibly_damaging(0.893) TCGA-G2-A3VY-01 15 42178522 42178522 A G SPTBN5 Missense_Mutation p.Y311H 0.14 probably_damaging(0.999) TCGA-G2-A3VY-01 15 42364006 42364006 C A PLA2G4D Missense_Mutation p.R513S 0.27 deleterious(0) benign(0.376) TCGA-G2-A3VY-01 15 43018340 43018340 C A CDAN1 Nonsense_Mutation p.E1075* 0.20 TCGA-G2-A3VY-01 15 43675567 43675567 C G TUBGCP4 Silent p.L196L 0.37 TCGA-G2-A3VY-01 15 48703211 48703211 C G FBN1 Missense_Mutation p.M2864I 0.23 probably_damaging(0.914) TCGA-G2-A3VY-01 15 49437194 49437194 C T COPS2 Missense_Mutation p.D46N 0.43 tolerated(0.45) benign(0.005) TCGA-G2-A3VY-01 15 51634220 51634220 G A GLDN Missense_Mutation p.M113I 0.28 deleterious(0.01) benign(0.107) TCGA-G2-A3VY-01 15 51778370 51778370 A - DMXL2 Frame_Shift_Del p.P1795Lfs*10 0.31 TCGA-G2-A3VY-01 15 52242065 52242065 C T LEO1 Missense_Mutation p.E580K 0.29 deleterious(0) probably_damaging(0.951) TCGA-G2-A3VY-01 15 52357247 52357247 C G MAPK6 3'UTR 0.38 TCGA-G2-A3VY-01 15 56981644 56981644 G C ZNF280D Nonsense_Mutation p.S175* 0.38 TCGA-G2-A3VY-01 15 57544631 57544631 G C TCF12 Missense_Mutation p.E401Q 0.43 deleterious(0.01) possibly_damaging(0.462) TCGA-G2-A3VY-01 15 57730472 57730472 C G CGNL1 Missense_Mutation p.S92C 0.19 tolerated(0.06) benign(0.353) TCGA-G2-A3VY-01 15 59323779 59323779 C G RNF111 Missense_Mutation p.S253C 0.05 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 15 65157298 65157298 G A PLEKHO2 Silent p.E228E 0.09 TCGA-G2-A3VY-01 15 65295436 65295436 C G MTFMT Missense_Mutation p.Q378H 0.40 tolerated(0.12) benign(0.235) TCGA-G2-A3VY-01 15 65899746 65899746 C T VWA9 Intron 0.27 TCGA-G2-A3VY-01 15 65917858 65917858 C A SLC24A1 Silent p.A480A 0.09 TCGA-G2-A3VY-01 15 70960935 70960935 C G UACA Missense_Mutation p.Q696H 0.32 tolerated(0.07) benign(0.009) TCGA-G2-A3VY-01 15 71185156 71185156 C G LRRC49 5'UTR 0.32 TCGA-G2-A3VY-01 15 73067210 73067210 G A ADPGK Intron 0.15 TCGA-G2-A3VY-01 15 73848666 73848666 G C C15orf60 Missense_Mutation p.Q190H 0.25 tolerated(0.37) benign(0.038) TCGA-G2-A3VY-01 15 74573088 74573088 G C CCDC33 Missense_Mutation p.K323N 0.23 deleterious(0.03) benign(0.001) TCGA-G2-A3VY-01 15 75108987 75108987 C T LMAN1L Silent p.I151I 0.09 TCGA-G2-A3VY-01 15 75798197 75798197 C T PTPN9 Missense_Mutation p.E263K 0.66 tolerated(0.14) benign(0.065) TCGA-G2-A3VY-01 15 75980516 75980516 C G CSPG4 Missense_Mutation p.D964H 0.04 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 15 77407505 77407505 C G PEAK1 Missense_Mutation p.E1412Q 0.23 tolerated(0.14) benign(0.312) TCGA-G2-A3VY-01 15 89398590 89398590 G A ACAN Missense_Mutation p.R925K 0.30 tolerated(1) benign(0.109) TCGA-G2-A3VY-01 15 90784743 90784743 C T GDPGP1 Silent p.F201F 0.34 TCGA-G2-A3VY-01 15 93545504 93545504 A C CHD2 Missense_Mutation p.E1412A 0.05 tolerated(0.35) benign(0.095) TCGA-G2-A3VY-01 16 111597 111597 C T RHBDF1 Missense_Mutation p.E436K 0.35 tolerated(0.36) possibly_damaging(0.507) TCGA-G2-A3VY-01 16 11773080 11773080 C G TXNDC11 Missense_Mutation p.E950Q 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-G2-A3VY-01 16 11931932 11931932 C G RSL1D1 Missense_Mutation p.K395N 0.04 deleterious(0.01) possibly_damaging(0.859) TCGA-G2-A3VY-01 16 16349968 16349968 C T NOMO3 Silent p.I391I 0.25 TCGA-G2-A3VY-01 16 20998710 20998710 G C DNAH3 Missense_Mutation p.L2315V 0.36 deleterious(0) probably_damaging(0.982) TCGA-G2-A3VY-01 16 21065842 21065842 T A DNAH3 Missense_Mutation p.K1313M 0.23 deleterious(0.01) possibly_damaging(0.781) TCGA-G2-A3VY-01 16 2153270 2153270 C A PKD1 Missense_Mutation p.D2930Y 0.68 benign(0.083) TCGA-G2-A3VY-01 16 2153839 2153839 C T PKD1 Missense_Mutation p.G2740E 0.76 benign(0.03) TCGA-G2-A3VY-01 16 230775 230775 T A HBQ1 Missense_Mutation p.L69H 0.20 tolerated(0.09) benign(0.095) TCGA-G2-A3VY-01 16 230776 230776 C A HBQ1 Silent p.L69L 0.20 TCGA-G2-A3VY-01 16 27456025 27456025 C A IL21R Missense_Mutation p.Q224K 0.21 tolerated(0.96) benign(0.029) TCGA-G2-A3VY-01 16 27802623 27802623 T A GSG1L 3'UTR 0.29 TCGA-G2-A3VY-01 16 29824976 29824976 C T PRRT2 Missense_Mutation p.H201Y 0.42 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-G2-A3VY-01 16 30096314 30096314 C G PPP4C Missense_Mutation p.I285M 0.35 tolerated(0.08) benign(0.04) TCGA-G2-A3VY-01 16 3100351 3100351 C G MMP25 Silent p.L155L 0.29 TCGA-G2-A3VY-01 16 31470893 31470893 C T ARMC5 Silent p.L16L 0.38 TCGA-G2-A3VY-01 16 3367974 3367974 C G ZNF75A 3'UTR 0.77 TCGA-G2-A3VY-01 16 47733202 47733202 G C PHKB Missense_Mutation p.L1069F 0.22 tolerated(0.09) benign(0.029) TCGA-G2-A3VY-01 16 48368170 48368170 C T LONP2 Silent p.I613I 0.22 TCGA-G2-A3VY-01 16 51175982 51175982 C G SALL1 Missense_Mutation p.E51Q 0.66 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 16 56504661 56504661 G A OGFOD1 Missense_Mutation p.E415K 0.17 tolerated(0.72) benign(0.009) TCGA-G2-A3VY-01 16 58565903 58565903 T C CNOT1 Missense_Mutation p.I2046V 0.76 tolerated(1) benign(0.017) TCGA-G2-A3VY-01 16 632999 632999 C T PIGQ Silent p.L550L 0.44 TCGA-G2-A3VY-01 16 66651180 66651180 C G CMTM4 Nonstop_Mutation p.*235Yext*15 0.19 TCGA-G2-A3VY-01 16 66783140 66783140 T A DYNC1LI2 Silent p.L86L 0.36 TCGA-G2-A3VY-01 16 67236431 67236431 G A ELMO3 Missense_Mutation p.D518N 0.28 tolerated(0.49) possibly_damaging(0.515) TCGA-G2-A3VY-01 16 67263797 67263797 G A FHOD1 Missense_Mutation p.S1104L 0.05 deleterious(0.02) probably_damaging(0.909) TCGA-G2-A3VY-01 16 69369059 69369059 T C COG8 Missense_Mutation p.T260A 0.16 tolerated(0.99) benign(0.002) TCGA-G2-A3VY-01 16 69375701 69375701 C G NIP7 3'UTR 0.14 TCGA-G2-A3VY-01 16 697470 697470 C T FAM195A Missense_Mutation p.T79M 0.61 tolerated(0.14) benign(0.071) TCGA-G2-A3VY-01 16 70603923 70603923 G T SF3B3 Missense_Mutation p.M1093I 0.23 tolerated(0.14) benign(0) TCGA-G2-A3VY-01 16 75646313 75646313 C T ADAT1 Missense_Mutation p.G291R 0.18 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 16 76556045 76556045 A G CNTNAP4 Silent p.E809E 0.24 TCGA-G2-A3VY-01 16 81077671 81077671 C G ATMIN Nonsense_Mutation p.S523* 0.28 TCGA-G2-A3VY-01 16 81078172 81078172 G A ATMIN Missense_Mutation p.G690E 0.29 tolerated(0.08) benign(0.043) TCGA-G2-A3VY-01 16 81078303 81078303 G T ATMIN Missense_Mutation p.D734Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-G2-A3VY-01 16 81078383 81078383 G A ATMIN Silent p.L760L 0.24 TCGA-G2-A3VY-01 16 81078637 81078637 G C ATMIN 3'UTR 0.21 TCGA-G2-A3VY-01 16 81078678 81078678 G T ATMIN 3'UTR 0.14 TCGA-G2-A3VY-01 16 85100813 85100813 G C KIAA0513 Missense_Mutation p.E46Q 0.23 deleterious(0.01) benign(0.306) TCGA-G2-A3VY-01 16 87365010 87365010 C G FBXO31 Missense_Mutation p.E502Q 0.36 deleterious(0.01) possibly_damaging(0.904) TCGA-G2-A3VY-01 16 88594547 88594547 G T ZFPM1 Nonsense_Mutation p.E205* 0.25 TCGA-G2-A3VY-01 16 88594556 88594556 G C ZFPM1 Missense_Mutation p.E208Q 0.18 deleterious(0.02) possibly_damaging(0.707) TCGA-G2-A3VY-01 16 88871024 88871024 A C CDT1 Missense_Mutation p.K100N 0.40 tolerated(0.18) benign(0.156) TCGA-G2-A3VY-01 16 89348054 89348054 C G ANKRD11 Missense_Mutation p.K1632N 0.07 possibly_damaging(0.776) TCGA-G2-A3VY-01 16 89799709 89799709 G C ZNF276 Splice_Site p.X390_splice 0.22 TCGA-G2-A3VY-01 16 89838145 89838145 C T FANCA Missense_Mutation p.E698K 0.31 tolerated(0.5) benign(0.292) TCGA-G2-A3VY-01 17 10362679 10362679 G C MYH4 Missense_Mutation p.F492L 0.28 deleterious(0.01) benign(0.031) TCGA-G2-A3VY-01 17 15501958 15501975 ATCCCAGTATCTGCAGGA - RP11-385D13.1 Splice_Site p.X788_splice 0.34 TCGA-G2-A3VY-01 17 1564436 1564436 G A PRPF8 Silent p.F1453F 0.91 TCGA-G2-A3VY-01 17 1564447 1564447 G C PRPF8 Missense_Mutation p.Q1450E 0.90 tolerated(0.25) benign(0.102) TCGA-G2-A3VY-01 17 1564634 1564634 G A PRPF8 Silent p.F1423F 0.91 TCGA-G2-A3VY-01 17 1564962 1564962 G C PRPF8 Missense_Mutation p.S1382C 0.88 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 17 16722174 16722174 G T AC022596.6 RNA 0.47 TCGA-G2-A3VY-01 17 18045033 18045033 G C MYO15A Silent p.L1866L 0.53 TCGA-G2-A3VY-01 17 19235231 19235231 C G EPN2 Missense_Mutation p.Q493E 0.19 tolerated(1) benign(0.01) TCGA-G2-A3VY-01 17 20768765 20768765 C A CCDC144NL Missense_Mutation p.R210I 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-G2-A3VY-01 17 20796765 20796765 G C CCDC144NL Missense_Mutation p.L119V 0.50 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-G2-A3VY-01 17 26824194 26824194 C T SLC13A2 Silent p.L611L 0.39 TCGA-G2-A3VY-01 17 26824428 26824428 C T SLC13A2 3'UTR 0.53 TCGA-G2-A3VY-01 17 27246266 27246266 C G PHF12 Missense_Mutation p.Q288H 0.18 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 17 27893107 27893107 C A ABHD15 Missense_Mutation p.S293I 0.26 deleterious(0) possibly_damaging(0.593) TCGA-G2-A3VY-01 17 28380355 28380379 TGACAAAGTGCTCTTGGAGATGAAT G EFCAB5 In_Frame_Del p.F461_N469delinsL 0.21 TCGA-G2-A3VY-01 17 28380875 28380875 G T EFCAB5 Nonsense_Mutation p.E635* 0.17 TCGA-G2-A3VY-01 17 29592283 29592283 G - NF1 Frame_Shift_Del p.T1589Rfs*2 0.12 TCGA-G2-A3VY-01 17 30986161 30986161 C G MYO1D Missense_Mutation p.E773Q 0.18 tolerated(0.64) benign(0.002) TCGA-G2-A3VY-01 17 30986208 30986208 C A MYO1D Missense_Mutation p.G757V 0.20 deleterious(0) probably_damaging(0.978) TCGA-G2-A3VY-01 17 3336869 3336869 G C OR1E2 Missense_Mutation p.D89E 0.40 tolerated(0.47) benign(0.006) TCGA-G2-A3VY-01 17 33749640 33749640 G C SLFN12 Silent p.V136V 0.30 TCGA-G2-A3VY-01 17 35468485 35468485 G C ACACA Missense_Mutation p.I2182M 0.37 tolerated(0.09) benign(0.007) TCGA-G2-A3VY-01 17 35800675 35800675 C T TADA2A Silent p.F118F 0.24 TCGA-G2-A3VY-01 17 36523881 36523881 C T SOCS7 Silent p.L436L 0.26 TCGA-G2-A3VY-01 17 37618605 37618605 G - CDK12 Frame_Shift_Del p.E95Rfs*29 0.11 TCGA-G2-A3VY-01 17 37949123 37949123 G A IKZF3 Missense_Mutation p.P76L 0.37 tolerated(0.33) benign(0.06) TCGA-G2-A3VY-01 17 3992006 3992006 G A ZZEF1 Missense_Mutation p.T736I 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-G2-A3VY-01 17 40123969 40123969 C - CNP Frame_Shift_Del p.P247Qfs*28 0.27 TCGA-G2-A3VY-01 17 4013096 4013096 G C ZZEF1 Silent p.L376L 0.22 TCGA-G2-A3VY-01 17 40336367 40336367 G C HCRT Silent p.G67G 0.60 TCGA-G2-A3VY-01 17 4200037 4200037 G A UBE2G1 Silent p.F74F 0.88 TCGA-G2-A3VY-01 17 42248105 42248105 G C ASB16 5'UTR 0.36 TCGA-G2-A3VY-01 17 42828010 42828010 G C DBF4B Missense_Mutation p.D413H 0.23 deleterious_low_confidence(0) benign(0.113) TCGA-G2-A3VY-01 17 44159875 44159875 C G KANSL1 Missense_Mutation p.E489Q 0.50 tolerated(0.15) benign(0.283) TCGA-G2-A3VY-01 17 4457360 4457360 T C MYBBP1A Missense_Mutation p.N136S 0.85 deleterious(0) probably_damaging(0.944) TCGA-G2-A3VY-01 17 4498617 4498617 C T SMTNL2 Silent p.A328A 0.10 TCGA-G2-A3VY-01 17 45560450 45560450 C T MRPL45P2 RNA 0.28 TCGA-G2-A3VY-01 17 46111232 46111232 C T COPZ2 Missense_Mutation p.E87K 0.58 deleterious(0.01) benign(0.133) TCGA-G2-A3VY-01 17 48431301 48431301 G T XYLT2 Missense_Mutation p.G149V 0.26 deleterious(0) probably_damaging(0.947) TCGA-G2-A3VY-01 17 48616645 48616645 G C EPN3 Missense_Mutation p.R287T 0.20 tolerated(0.08) benign(0.044) TCGA-G2-A3VY-01 17 5138001 5138001 A T SCIMP Intron 0.44 TCGA-G2-A3VY-01 17 5377902 5377902 C G DERL2 3'UTR 0.24 TCGA-G2-A3VY-01 17 56693643 56693643 C G TEX14 Missense_Mutation p.Q226H 0.15 tolerated(0.87) benign(0.034) TCGA-G2-A3VY-01 17 57743482 57743482 G A CLTC Missense_Mutation p.E555K 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-G2-A3VY-01 17 59560332 59560332 C T TBX4 Missense_Mutation p.H365Y 0.26 tolerated(0.2) probably_damaging(0.985) TCGA-G2-A3VY-01 17 59760536 59760536 C G BRIP1 3'UTR 0.60 TCGA-G2-A3VY-01 17 61488930 61488930 G A TANC2 Silent p.L1142L 0.26 TCGA-G2-A3VY-01 17 61782010 61782010 G C STRADA Intron 0.50 TCGA-G2-A3VY-01 17 67023212 67023212 G C ABCA9 Nonsense_Mutation p.S652* 0.33 TCGA-G2-A3VY-01 17 71231891 71231891 G T C17orf80 Silent p.V90V 0.33 TCGA-G2-A3VY-01 17 72350300 72350300 G C KIF19 Splice_Site p.X770_splice 0.23 TCGA-G2-A3VY-01 17 72366737 72366737 G C GPR142 Missense_Mutation p.E146Q 0.32 deleterious(0.01) possibly_damaging(0.572) TCGA-G2-A3VY-01 17 73282713 73282713 C T SLC25A19 Splice_Site p.X44_splice 0.22 TCGA-G2-A3VY-01 17 73491026 73491026 C G KIAA0195 Missense_Mutation p.S880C 0.31 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 17 73775024 73775024 C G H3F3B Missense_Mutation p.R50P 0.22 deleterious_low_confidence(0) benign(0.319) TCGA-G2-A3VY-01 17 73830498 73830498 G A UNC13D Nonsense_Mutation p.Q736* 0.77 TCGA-G2-A3VY-01 17 74274098 74274098 G C QRICH2 Missense_Mutation p.Q1531E 0.25 deleterious(0) possibly_damaging(0.591) TCGA-G2-A3VY-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.91 deleterious(0) probably_damaging(0.947) TCGA-G2-A3VY-01 17 78111251 78111251 G C EIF4A3 Nonsense_Mutation p.S306* 0.44 TCGA-G2-A3VY-01 17 7983817 7983817 C T AC129492.6 3'UTR 0.92 TCGA-G2-A3VY-01 17 7983826 7983826 C T AC129492.6 3'UTR 0.93 TCGA-G2-A3VY-01 17 7984174 7984174 G A AC129492.6 3'UTR 0.34 TCGA-G2-A3VY-01 17 79893381 79893381 C T PYCR1 Silent p.V50V 0.26 TCGA-G2-A3VY-01 17 80446122 80446122 G C NARF 3'UTR 0.69 TCGA-G2-A3VY-01 17 8157482 8157482 A C PFAS Splice_Site p.X48_splice 0.54 TCGA-G2-A3VY-01 17 8808182 8808182 G A PIK3R5 Silent p.T108T 0.26 TCGA-G2-A3VY-01 18 12948141 12948141 C T SEH1L Silent p.I7I 0.29 TCGA-G2-A3VY-01 18 15323298 15323298 G C RNU6-721P 5'Flank 0.14 TCGA-G2-A3VY-01 18 22008854 22008854 C G IMPACT Missense_Mutation p.P63A 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-G2-A3VY-01 18 3129355 3129355 T A MYOM1 Missense_Mutation p.N890I 0.24 tolerated(0.2) benign(0.035) TCGA-G2-A3VY-01 18 47404156 47404156 C T MYO5B Missense_Mutation p.E1125K 0.65 deleterious(0.01) benign(0.26) TCGA-G2-A3VY-01 18 55268778 55268778 G C NARS 3'UTR 0.91 TCGA-G2-A3VY-01 18 59713070 59713070 G A PIGN 3'UTR 0.13 TCGA-G2-A3VY-01 18 61570328 61570328 G A SERPINB2 Missense_Mutation p.R346K 0.23 tolerated(1) benign(0.003) TCGA-G2-A3VY-01 18 63526160 63526160 G C CDH7 Splice_Site p.X458_splice 0.39 TCGA-G2-A3VY-01 18 641518 641518 G C CLUL1 Missense_Mutation p.E396Q 0.41 tolerated(0.08) probably_damaging(0.945) TCGA-G2-A3VY-01 18 70532056 70532056 G C NETO1 Missense_Mutation p.I69M 0.30 deleterious(0) possibly_damaging(0.558) TCGA-G2-A3VY-01 18 72226648 72226648 G T CNDP1 Missense_Mutation p.A82S 0.08 tolerated(0.07) benign(0.25) TCGA-G2-A3VY-01 18 72345042 72345042 C A ZNF407 Silent p.S689S 0.25 TCGA-G2-A3VY-01 18 8624969 8624969 G C RAB12 Missense_Mutation p.R87T 0.18 deleterious(0.04) benign(0.347) TCGA-G2-A3VY-01 18 8793020 8793020 G C SOGA2 Missense_Mutation p.E638Q 0.22 deleterious(0.02) possibly_damaging(0.565) TCGA-G2-A3VY-01 19 10476364 10476364 C G TYK2 Silent p.L280L 0.34 TCGA-G2-A3VY-01 19 10478979 10478979 G A TYK2 Silent p.F103F 0.45 TCGA-G2-A3VY-01 19 10930726 10930726 C T DNM2 Missense_Mutation p.S581F 0.23 deleterious(0.02) probably_damaging(0.949) TCGA-G2-A3VY-01 19 11138491 11138491 G A SMARCA4 Missense_Mutation p.E1083K 0.49 probably_damaging(0.995) TCGA-G2-A3VY-01 19 11224208 11224208 C A LDLR Intron 0.46 TCGA-G2-A3VY-01 19 11917579 11917579 C G ZNF491 Missense_Mutation p.H271D 0.40 deleterious(0) possibly_damaging(0.595) TCGA-G2-A3VY-01 19 12155622 12155622 G A ZNF878 Silent p.P198P 0.49 TCGA-G2-A3VY-01 19 12156003 12156003 G C ZNF878 Silent p.L71L 0.37 TCGA-G2-A3VY-01 19 12157504 12157504 C A ZNF878 Missense_Mutation p.Q25H 0.43 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 19 14040949 14040949 G C CC2D1A Silent p.L923L 0.16 TCGA-G2-A3VY-01 19 15271437 15271437 C G NOTCH3 3'UTR 0.15 TCGA-G2-A3VY-01 19 15728816 15728816 T G AD000091.2 5'Flank 0.19 TCGA-G2-A3VY-01 19 17327021 17327021 C G USE1 Missense_Mutation p.P92R 0.17 tolerated(0.17) probably_damaging(0.946) TCGA-G2-A3VY-01 19 17452366 17452366 C G GTPBP3 Missense_Mutation p.L477V 0.26 deleterious(0) probably_damaging(0.976) TCGA-G2-A3VY-01 19 17571379 17571379 G T NXNL1 Missense_Mutation p.F100L 0.49 tolerated(0.07) benign(0.403) TCGA-G2-A3VY-01 19 18304802 18304802 C T MPV17L2 Nonsense_Mutation p.Q106* 0.28 TCGA-G2-A3VY-01 19 19218757 19218757 G A SLC25A42 Silent p.K184K 0.55 TCGA-G2-A3VY-01 19 2217074 2217074 G C DOT1L Missense_Mutation p.E843D 0.27 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-G2-A3VY-01 19 22939880 22939880 A T ZNF99 3'Flank 0.15 TCGA-G2-A3VY-01 19 33467501 33467501 G C C19orf40 Silent p.L187L 0.19 TCGA-G2-A3VY-01 19 33581683 33581683 C G GPATCH1 Intron 0.51 TCGA-G2-A3VY-01 19 35530030 35530030 A T SCN1B 3'Flank 0.52 TCGA-G2-A3VY-01 19 36002341 36002341 C A DMKN Missense_Mutation p.R297I 0.12 tolerated_low_confidence(0.12) unknown(0) TCGA-G2-A3VY-01 19 36357214 36357214 C A KIRREL2 Silent p.V649V 0.13 TCGA-G2-A3VY-01 19 36593683 36593683 G A WDR62 Missense_Mutation p.E1089K 0.21 tolerated(0.16) benign(0.018) TCGA-G2-A3VY-01 19 36642380 36642380 C T COX7A1 Missense_Mutation p.M57I 0.10 deleterious(0) probably_damaging(0.935) TCGA-G2-A3VY-01 19 38861524 38861524 C T CATSPERG 3'UTR 0.19 TCGA-G2-A3VY-01 19 39103253 39103253 G C MAP4K1 Silent p.L221L 0.54 TCGA-G2-A3VY-01 19 39208629 39208629 G A ACTN4 Silent p.L402L 0.28 TCGA-G2-A3VY-01 19 39327319 39327319 G C HNRNPL 3'UTR 0.16 TCGA-G2-A3VY-01 19 39396010 39396010 C T NFKBIB Missense_Mutation p.R152W 0.67 deleterious(0) possibly_damaging(0.72) TCGA-G2-A3VY-01 19 40368511 40368511 G A FCGBP Silent p.F4279F 0.23 TCGA-G2-A3VY-01 19 40433168 40433168 G A FCGBP Silent p.I367I 0.31 TCGA-G2-A3VY-01 19 41066206 41066206 G A SPTBN4 Missense_Mutation p.V1938I 0.21 tolerated(0.24) benign(0.184) TCGA-G2-A3VY-01 19 41352802 41352802 G C CYP2A6 Missense_Mutation p.S270C 0.10 probably_damaging(1) TCGA-G2-A3VY-01 19 42585402 42585402 G C ZNF574 Missense_Mutation p.E882Q 0.50 tolerated(0.1) possibly_damaging(0.727) TCGA-G2-A3VY-01 19 42728831 42728831 G A ZNF526 Silent p.Q92Q 0.36 TCGA-G2-A3VY-01 19 42759169 42759169 G A AC006486.9 5'UTR 0.53 TCGA-G2-A3VY-01 19 42837807 42837807 G A MEGF8 Missense_Mutation p.E80K 0.18 tolerated(0.08) probably_damaging(0.999) TCGA-G2-A3VY-01 19 43349256 43349256 G C PSG10P RNA 0.55 TCGA-G2-A3VY-01 19 44418392 44418392 C T ZNF45 Missense_Mutation p.R399Q 0.37 tolerated(0.7) probably_damaging(0.989) TCGA-G2-A3VY-01 19 44570825 44570825 C G ZNF223 Missense_Mutation p.H282D 0.38 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 19 44571219 44571219 C G ZNF223 Nonsense_Mutation p.S413* 0.09 TCGA-G2-A3VY-01 19 45926592 45926592 G A ERCC1 Missense_Mutation p.S14L 0.15 tolerated_low_confidence(0.11) benign(0.055) TCGA-G2-A3VY-01 19 46192596 46192596 G C SNRPD2 Intron 0.41 TCGA-G2-A3VY-01 19 46998632 46998632 C T PNMAL2 Missense_Mutation p.E31K 0.21 deleterious(0.03) benign(0.235) TCGA-G2-A3VY-01 19 47195050 47195050 G A PRKD2 Silent p.V548V 0.33 TCGA-G2-A3VY-01 19 47423316 47423316 G C ARHGAP35 Missense_Mutation p.E462Q 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-G2-A3VY-01 19 47423403 47423403 G C ARHGAP35 Missense_Mutation p.E491Q 0.36 tolerated(0.16) possibly_damaging(0.543) TCGA-G2-A3VY-01 19 47424472 47424472 G C ARHGAP35 Missense_Mutation p.R847T 0.43 deleterious(0) probably_damaging(0.997) TCGA-G2-A3VY-01 19 47824193 47824193 T A C5AR1 3'UTR 0.18 TCGA-G2-A3VY-01 19 48343251 48343251 C G CRX 3'UTR 0.22 TCGA-G2-A3VY-01 19 48640828 48640828 G A LIG1 Missense_Mutation p.S402F 0.57 deleterious(0.04) benign(0.096) TCGA-G2-A3VY-01 19 48643250 48643250 G C LIG1 Silent p.L355L 0.17 TCGA-G2-A3VY-01 19 48660322 48660322 C T LIG1 Missense_Mutation p.D107N 0.13 tolerated_low_confidence(0.62) benign(0) TCGA-G2-A3VY-01 19 49298626 49298626 G C BCAT2 3'UTR 0.16 TCGA-G2-A3VY-01 19 49341304 49341304 C G PLEKHA4 Missense_Mutation p.E683Q 0.13 deleterious_low_confidence(0) benign(0.282) TCGA-G2-A3VY-01 19 51452167 51452167 A G KLK5 Silent p.S180S 0.32 TCGA-G2-A3VY-01 19 51466738 51466738 C G KLK6 Missense_Mutation p.V89L 0.14 deleterious(0) possibly_damaging(0.687) TCGA-G2-A3VY-01 19 52663800 52663800 C T ZNF836 Silent p.E20E 0.22 TCGA-G2-A3VY-01 19 53367341 53367341 C G CTD-2331H12.5 5'Flank 0.17 TCGA-G2-A3VY-01 19 53456059 53456059 C G ZNF816 Missense_Mutation p.Q45H 0.27 deleterious(0) possibly_damaging(0.819) TCGA-G2-A3VY-01 19 53473267 53473267 C T ZNF702P RNA 0.23 TCGA-G2-A3VY-01 19 53668107 53668107 C T ZNF665 Missense_Mutation p.D546N 0.67 tolerated(0.1) benign(0.133) TCGA-G2-A3VY-01 19 53958226 53958226 G C ZNF761 RNA 0.27 TCGA-G2-A3VY-01 19 54444867 54444867 G C CACNG7 Missense_Mutation p.E190Q 0.07 deleterious(0.04) benign(0.377) TCGA-G2-A3VY-01 19 54746614 54746614 G T LILRA6 5'UTR 0.07 TCGA-G2-A3VY-01 19 54937898 54937898 C G TTYH1 Silent p.L229L 0.13 TCGA-G2-A3VY-01 19 55435133 55435133 G T NLRP7 Missense_Mutation p.P1030H 0.34 deleterious(0) possibly_damaging(0.735) TCGA-G2-A3VY-01 19 55556416 55556416 C G RDH13 3'UTR 0.23 TCGA-G2-A3VY-01 19 55556446 55556446 C G RDH13 Missense_Mutation p.R331T 0.24 deleterious_low_confidence(0.01) benign(0.035) TCGA-G2-A3VY-01 19 56600188 56600188 C G ZNF787 Missense_Mutation p.G118A 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-G2-A3VY-01 19 57835137 57835137 G C ZNF543 Missense_Mutation p.E36Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-G2-A3VY-01 19 58058594 58058594 C T ZNF550 Missense_Mutation p.E299K 0.21 deleterious(0.04) benign(0.141) TCGA-G2-A3VY-01 19 58772414 58772414 G C ZNF544 Missense_Mutation p.E148Q 0.41 tolerated(0.09) benign(0.014) TCGA-G2-A3VY-01 19 58772614 58772614 G C ZNF544 Missense_Mutation p.E214D 0.29 tolerated(0.09) probably_damaging(0.935) TCGA-G2-A3VY-01 19 5927994 5927994 C G RANBP3 Missense_Mutation p.L266F 0.56 deleterious(0.01) probably_damaging(0.969) TCGA-G2-A3VY-01 19 6495749 6495749 G C TUBB4A Missense_Mutation p.A254G 0.13 deleterious_low_confidence(0.02) benign(0.264) TCGA-G2-A3VY-01 19 6665079 6665079 G A TNFSF14 Missense_Mutation p.S194F 0.31 deleterious(0.04) benign(0.078) TCGA-G2-A3VY-01 19 7615490 7615490 G A PNPLA6 Silent p.L687L 0.40 TCGA-G2-A3VY-01 19 804643 804643 G A PTBP1 Missense_Mutation p.V183M 0.40 deleterious(0) possibly_damaging(0.811) TCGA-G2-A3VY-01 19 8841489 8841489 C T OR2Z1 Silent p.V33V 0.35 TCGA-G2-A3VY-01 19 8969428 8969428 C G MUC16 Splice_Site p.X14306_splice 0.57 TCGA-G2-A3VY-01 19 9083460 9083460 C G MUC16 Silent p.V2785V 0.21 TCGA-G2-A3VY-01 1 101491019 101491019 G C DPH5 5'UTR 0.67 TCGA-G2-A3VY-01 1 103488306 103488306 C T COL11A1 Missense_Mutation p.E413K 0.35 probably_damaging(0.938) TCGA-G2-A3VY-01 1 104162179 104162179 A C AMY2A Silent p.R173R 0.20 TCGA-G2-A3VY-01 1 109643217 109643217 G C TMEM167B 3'Flank 0.14 TCGA-G2-A3VY-01 1 109715160 109715160 G T KIAA1324 Missense_Mutation p.K222N 0.20 tolerated(0.07) possibly_damaging(0.628) TCGA-G2-A3VY-01 1 109715167 109715167 G A KIAA1324 Missense_Mutation p.E225K 0.21 tolerated(0.22) possibly_damaging(0.475) TCGA-G2-A3VY-01 1 110163738 110163738 G A AMPD2 Missense_Mutation p.E35K 0.50 tolerated_low_confidence(0.23) benign(0) TCGA-G2-A3VY-01 1 110169425 110169425 G C AMPD2 Silent p.L257L 0.16 TCGA-G2-A3VY-01 1 114402061 114402061 T C PTPN22 Missense_Mutation p.K37E 0.63 deleterious(0) possibly_damaging(0.696) TCGA-G2-A3VY-01 1 117617798 117617798 G C TTF2 Missense_Mutation p.E198Q 0.25 tolerated(0.2) benign(0.168) TCGA-G2-A3VY-01 1 118166265 118166265 G C FAM46C Missense_Mutation p.D259H 0.21 tolerated(0.07) possibly_damaging(0.534) TCGA-G2-A3VY-01 1 120539792 120539792 C T NOTCH2 Silent p.Q193Q 0.11 TCGA-G2-A3VY-01 1 120539834 120539834 A G NOTCH2 Silent p.C179C 0.10 TCGA-G2-A3VY-01 1 12364770 12364770 G C VPS13D Missense_Mutation p.E2142Q 0.74 benign(0) TCGA-G2-A3VY-01 1 1325663 1325663 C T CCNL2 Missense_Mutation p.G318E 0.15 tolerated(0.78) benign(0.002) TCGA-G2-A3VY-01 1 146055392 146055392 G C NBPF11 Missense_Mutation p.F131L 0.12 tolerated(0.1) probably_damaging(0.916) TCGA-G2-A3VY-01 1 146639436 146639436 G T PRKAB2 Missense_Mutation p.P78H 0.36 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 1 146639438 146639438 C T PRKAB2 Silent p.R77R 0.36 TCGA-G2-A3VY-01 1 149900841 149900841 C G MTMR11 3'UTR 0.15 TCGA-G2-A3VY-01 1 150129184 150129184 G A PLEKHO1 Missense_Mutation p.R133Q 0.12 deleterious(0.02) probably_damaging(0.975) TCGA-G2-A3VY-01 1 150240428 150240428 G A APH1A Silent p.L71L 0.15 TCGA-G2-A3VY-01 1 150689625 150689625 C G HORMAD1 Missense_Mutation p.R56T 0.16 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 1 151108989 151108989 G C SEMA6C Missense_Mutation p.F347L 0.18 deleterious(0) benign(0.177) TCGA-G2-A3VY-01 1 152279938 152279938 C G FLG Missense_Mutation p.G2475A 0.28 probably_damaging(0.996) TCGA-G2-A3VY-01 1 152281452 152281452 A T FLG Silent p.S1970S 0.22 TCGA-G2-A3VY-01 1 152283396 152283396 A T FLG Silent p.S1322S 0.06 TCGA-G2-A3VY-01 1 153362985 153362985 C G S100A8 Missense_Mutation p.L9F 0.20 deleterious(0.01) probably_damaging(0.938) TCGA-G2-A3VY-01 1 153638142 153638142 C T ILF2 Missense_Mutation p.E153K 0.05 tolerated(0.08) possibly_damaging(0.525) TCGA-G2-A3VY-01 1 155231977 155231977 C G SCAMP3 5'UTR 0.48 TCGA-G2-A3VY-01 1 155288696 155288696 C G FDPS Missense_Mutation p.P275A 0.45 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 1 155448304 155448304 G C ASH1L Missense_Mutation p.L1453V 0.19 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-G2-A3VY-01 1 156622477 156622477 C T BCAN Nonsense_Mutation p.R579* 0.44 TCGA-G2-A3VY-01 1 156764501 156764501 C T PRCC Silent p.I408I 0.27 TCGA-G2-A3VY-01 1 158326421 158326421 C G CD1E Intron 0.42 TCGA-G2-A3VY-01 1 158615287 158615287 G A SPTA1 Nonsense_Mutation p.Q1332* 0.37 TCGA-G2-A3VY-01 1 158735776 158735776 C A OR6N1 Missense_Mutation p.G233C 0.25 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 1 159409997 159409997 G C OR10J1 Missense_Mutation p.R150T 0.07 tolerated(0.12) benign(0.057) TCGA-G2-A3VY-01 1 159857685 159857685 C G CCDC19 Missense_Mutation p.Q178H 0.49 deleterious(0) possibly_damaging(0.738) TCGA-G2-A3VY-01 1 160000857 160000857 G C PIGM Missense_Mutation p.R225G 0.21 tolerated(0.19) benign(0.001) TCGA-G2-A3VY-01 1 160098576 160098576 G A ATP1A2 Missense_Mutation p.M384I 0.27 deleterious(0) probably_damaging(0.967) TCGA-G2-A3VY-01 1 160766040 160766040 G A LY9 Silent p.Q21Q 0.21 TCGA-G2-A3VY-01 1 160794037 160794037 C G LY9 Missense_Mutation p.Q633E 0.17 deleterious(0.01) benign(0.001) TCGA-G2-A3VY-01 1 16260296 16260296 G A SPEN Missense_Mutation p.D2521N 0.26 possibly_damaging(0.606) TCGA-G2-A3VY-01 1 16262749 16262749 G A SPEN Silent p.K3338K 0.47 TCGA-G2-A3VY-01 1 162767598 162767598 G A HSD17B7 Silent p.V113V 0.10 TCGA-G2-A3VY-01 1 167024974 167024974 G C GPA33 Silent p.V228V 0.19 TCGA-G2-A3VY-01 1 16767292 16767292 C T NECAP2 Silent p.V12V 0.19 TCGA-G2-A3VY-01 1 168035698 168035698 G C DCAF6 Missense_Mutation p.D894H 0.06 tolerated(0.18) possibly_damaging(0.754) TCGA-G2-A3VY-01 1 169762167 169762167 C G METTL18 Missense_Mutation p.D224H 0.16 deleterious(0) probably_damaging(0.948) TCGA-G2-A3VY-01 1 171482304 171482304 G C PRRC2C Missense_Mutation p.E93Q 0.21 unknown(0) TCGA-G2-A3VY-01 1 171501557 171501557 G C PRRC2C Missense_Mutation p.D442H 0.27 unknown(0) TCGA-G2-A3VY-01 1 171621212 171621212 C T MYOC Silent p.L180L 0.23 TCGA-G2-A3VY-01 1 172634759 172634759 C T FASLG Intron 0.11 TCGA-G2-A3VY-01 1 173523900 173523900 G C SLC9C2 Nonsense_Mutation p.Y423* 0.16 TCGA-G2-A3VY-01 1 175375427 175375427 C G TNR Missense_Mutation p.E142Q 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-G2-A3VY-01 1 17699682 17699682 C A PADI6 RNA 0.44 TCGA-G2-A3VY-01 1 178848093 178848093 G C RALGPS2 Missense_Mutation p.E268Q 0.23 deleterious(0.03) benign(0.308) TCGA-G2-A3VY-01 1 18021748 18021748 C T ARHGEF10L Missense_Mutation p.R1094W 0.21 deleterious(0) possibly_damaging(0.884) TCGA-G2-A3VY-01 1 183515224 183515224 G C SMG7 Missense_Mutation p.E786Q 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G2-A3VY-01 1 184686740 184686740 G C EDEM3 Missense_Mutation p.F393L 0.24 tolerated(0.11) benign(0.113) TCGA-G2-A3VY-01 1 186083224 186083224 G T HMCN1 Missense_Mutation p.D3749Y 0.50 probably_damaging(0.999) TCGA-G2-A3VY-01 1 19436596 19436596 C A UBR4 Missense_Mutation p.K4033N 0.26 probably_damaging(0.95) TCGA-G2-A3VY-01 1 197019986 197019986 G A F13B Missense_Mutation p.P527S 0.41 deleterious(0) probably_damaging(0.99) TCGA-G2-A3VY-01 1 200708985 200708985 G C CAMSAP2 Missense_Mutation p.M10I 0.33 tolerated(0.29) benign(0.015) TCGA-G2-A3VY-01 1 203276294 203276294 C G BTG2 Missense_Mutation p.R69G 0.41 deleterious(0) probably_damaging(0.996) TCGA-G2-A3VY-01 1 203276634 203276634 C T BTG2 3'UTR 0.38 TCGA-G2-A3VY-01 1 204400860 204400860 A G PIK3C2B Missense_Mutation p.F1406S 0.05 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 1 204438084 204438084 G A PIK3C2B Nonsense_Mutation p.Q283* 0.22 TCGA-G2-A3VY-01 1 212120009 212120009 C T INTS7 Silent p.L785L 0.62 TCGA-G2-A3VY-01 1 214542945 214542945 C T PTPN14 Silent p.T1042T 0.31 TCGA-G2-A3VY-01 1 220273958 220273958 C G IARS2 Missense_Mutation p.Q173E 0.18 tolerated(0.19) benign(0.02) TCGA-G2-A3VY-01 1 222923383 222923383 G A FAM177B Missense_Mutation p.E154K 0.19 tolerated(0.44) benign(0.004) TCGA-G2-A3VY-01 1 22303559 22303559 C T CELA3B Silent p.L9L 0.25 TCGA-G2-A3VY-01 1 224804936 224804936 C T CNIH3 Silent p.L20L 0.17 TCGA-G2-A3VY-01 1 228210569 228210569 C T WNT3A Silent p.V91V 0.41 TCGA-G2-A3VY-01 1 22852749 22852749 G C ZBTB40 Missense_Mutation p.E1194Q 0.19 tolerated(0.2) benign(0.01) TCGA-G2-A3VY-01 1 228558384 228558384 C G OBSCN Missense_Mutation p.S7681C 0.40 probably_damaging(0.994) TCGA-G2-A3VY-01 1 230937333 230937333 G T CAPN9 Missense_Mutation p.M688I 0.26 tolerated(0.05) benign(0.036) TCGA-G2-A3VY-01 1 231376970 231377004 AGATGGCGGCGCCCGGGATCCTGTGTAGCGGCTGC - GNPAT 5'UTR 0.74 TCGA-G2-A3VY-01 1 232564265 232564265 C G SIPA1L2 Missense_Mutation p.Q1434H 0.36 deleterious(0.03) benign(0.005) TCGA-G2-A3VY-01 1 232650028 232650028 T C SIPA1L2 Missense_Mutation p.K353R 0.17 tolerated(0.09) benign(0.098) TCGA-G2-A3VY-01 1 233120280 233120280 C G PCNXL2 Intron 0.88 TCGA-G2-A3VY-01 1 235887452 235887452 G T LYST Nonsense_Mutation p.S3064* 0.08 TCGA-G2-A3VY-01 1 235887453 235887453 A T LYST Missense_Mutation p.S3064T 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-G2-A3VY-01 1 236899015 236899015 G A ACTN2 Missense_Mutation p.E260K 0.61 tolerated(0.57) benign(0.053) TCGA-G2-A3VY-01 1 23886002 23886002 C T ID3 5'UTR 0.25 TCGA-G2-A3VY-01 1 241663871 241663871 G A FH Missense_Mutation p.S419L 0.67 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 1 241714300 241714300 C G KMO Missense_Mutation p.L90V 0.33 tolerated(0.55) benign(0.05) TCGA-G2-A3VY-01 1 2435841 2435841 C G PLCH2 3'UTR 0.16 TCGA-G2-A3VY-01 1 24421367 24421367 C T MYOM3 Missense_Mutation p.E302K 0.22 tolerated(0.22) benign(0.403) TCGA-G2-A3VY-01 1 2541195 2541195 C T MMEL1 Nonsense_Mutation p.W123* 0.21 TCGA-G2-A3VY-01 1 26752886 26752886 C G LIN28A Silent p.T189T 0.22 TCGA-G2-A3VY-01 1 27121497 27121497 G C PIGV Missense_Mutation p.Q324H 0.18 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 1 32140871 32140871 G A COL16A1 Silent p.L938L 0.42 TCGA-G2-A3VY-01 1 33237530 33237530 C G KIAA1522 Nonsense_Mutation p.S917* 0.22 TCGA-G2-A3VY-01 1 36932897 36932897 G T CSF3R Silent p.L658L 0.54 TCGA-G2-A3VY-01 1 3756216 3756216 C G CEP104 Missense_Mutation p.D231H 0.67 deleterious(0.05) possibly_damaging(0.649) TCGA-G2-A3VY-01 1 38192853 38192853 C T EPHA10 Missense_Mutation p.A565T 0.24 tolerated(0.25) possibly_damaging(0.743) TCGA-G2-A3VY-01 1 38227612 38227612 C T EPHA10 Silent p.L105L 0.55 TCGA-G2-A3VY-01 1 40961190 40961190 G A ZFP69 Missense_Mutation p.R347K 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-G2-A3VY-01 1 43630326 43630326 C G EBNA1BP2 Missense_Mutation p.K341N 0.62 tolerated(0.07) benign(0.261) TCGA-G2-A3VY-01 1 44401357 44401357 C T ARTN Missense_Mutation p.T10M 0.38 deleterious_low_confidence(0.03) benign(0.068) TCGA-G2-A3VY-01 1 44401689 44401689 C A ARTN Intron 0.28 TCGA-G2-A3VY-01 1 44401732 44401732 C G ARTN Intron 0.17 TCGA-G2-A3VY-01 1 44422329 44422329 G T IPO13 Nonsense_Mutation p.E354* 0.35 TCGA-G2-A3VY-01 1 44424502 44424502 G A IPO13 Missense_Mutation p.E657K 0.37 tolerated(0.77) benign(0.002) TCGA-G2-A3VY-01 1 47717130 47717130 G A STIL Missense_Mutation p.S1182F 0.34 tolerated(0.47) benign(0.107) TCGA-G2-A3VY-01 1 48694921 48694921 C G SLC5A9 Intron 0.30 TCGA-G2-A3VY-01 1 50956338 50956338 C G FAF1 Splice_Site p.X526_splice 0.30 TCGA-G2-A3VY-01 1 51425515 51425515 G C FAF1 5'UTR 0.53 TCGA-G2-A3VY-01 1 57192183 57192183 C G C1orf168 Missense_Mutation p.E623Q 0.22 tolerated(0.09) benign(0.067) TCGA-G2-A3VY-01 1 59042168 59042168 C A TACSTD2 Missense_Mutation p.D221Y 0.32 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 1 63988806 63988806 C G ITGB3BP 5'UTR 0.28 TCGA-G2-A3VY-01 1 65316594 65316594 C T JAK1 Splice_Site p.X550_splice 0.25 TCGA-G2-A3VY-01 1 6585981 6585981 C G NOL9 Missense_Mutation p.R681T 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-G2-A3VY-01 1 67518490 67518490 G C SLC35D1 Silent p.V96V 0.57 TCGA-G2-A3VY-01 1 75188928 75188928 A T CRYZ Silent p.G46G 0.64 TCGA-G2-A3VY-01 1 87805743 87805743 C T LMO4 Missense_Mutation p.S116F 0.57 tolerated(0.71) benign(0.008) TCGA-G2-A3VY-01 1 92528855 92528855 C G EPHX4 3'UTR 0.32 TCGA-G2-A3VY-01 1 92767046 92767046 G C RPAP2 Missense_Mutation p.E45Q 0.40 deleterious(0.02) possibly_damaging(0.611) TCGA-G2-A3VY-01 1 94473258 94473258 T G ABCA4 Silent p.T1979T 0.30 TCGA-G2-A3VY-01 1 94941201 94941201 G C ABCD3 Missense_Mutation p.D179H 0.42 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 1 9782153 9782153 G C PIK3CD Missense_Mutation p.E726Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A3VY-01 20 31685467 31685467 C A BPIFB4 Silent p.I481I 0.10 TCGA-G2-A3VY-01 20 32251484 32251484 G T C20orf144 Silent p.P91P 0.67 TCGA-G2-A3VY-01 20 32661429 32661429 C G RALY Missense_Mutation p.S106C 0.16 deleterious(0.01) possibly_damaging(0.738) TCGA-G2-A3VY-01 20 33588881 33588881 G A MYH7B Missense_Mutation p.E1841K 0.16 benign(0.405) TCGA-G2-A3VY-01 20 34086527 34086527 G T CEP250 Missense_Mutation p.W1253C 0.77 probably_damaging(0.919) TCGA-G2-A3VY-01 20 34828499 34828499 G C AAR2 Missense_Mutation p.E237Q 0.22 tolerated(0.18) benign(0.031) TCGA-G2-A3VY-01 20 35207317 35207317 C A TGIF2 Nonsense_Mutation p.S47* 0.12 TCGA-G2-A3VY-01 20 36431427 36431427 G A CTNNBL1 Missense_Mutation p.G397E 0.27 tolerated(0.53) possibly_damaging(0.808) TCGA-G2-A3VY-01 20 37191299 37191299 G T RALGAPB Missense_Mutation p.W1219L 0.49 deleterious(0) probably_damaging(0.997) TCGA-G2-A3VY-01 20 37353648 37353648 C T SLC32A1 Missense_Mutation p.P94L 0.23 deleterious(0.03) benign(0.001) TCGA-G2-A3VY-01 20 42355269 42355269 G A GTSF1L Silent p.F22F 0.28 TCGA-G2-A3VY-01 20 43255125 43255125 C A ADA Missense_Mutation p.V112L 0.21 tolerated(0.08) possibly_damaging(0.656) TCGA-G2-A3VY-01 20 43723710 43723710 G A KCNS1 Missense_Mutation p.S461F 0.07 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 20 43933045 43933045 C T MATN4 Missense_Mutation p.E156K 0.17 possibly_damaging(0.508) TCGA-G2-A3VY-01 20 44445491 44445491 C G UBE2C 3'UTR 0.27 TCGA-G2-A3VY-01 20 60485588 60485606 CAGTGGGGATCCATCCGGG - CDH4 Frame_Shift_Del p.S434Tfs*9 0.12 TCGA-G2-A3VY-01 20 60708371 60708371 G C LSM14B Missense_Mutation p.E338Q 0.43 deleterious(0) probably_damaging(0.945) TCGA-G2-A3VY-01 20 62421402 62421402 G A ZBTB46 Nonsense_Mutation p.Q237* 0.07 TCGA-G2-A3VY-01 20 62654184 62654184 G C PRPF6 Missense_Mutation p.K574N 0.24 deleterious(0) possibly_damaging(0.703) TCGA-G2-A3VY-01 21 10942732 10942732 G C TPTE Missense_Mutation p.L237V 0.12 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 21 11049474 11049474 T A BAGE2 RNA 0.10 TCGA-G2-A3VY-01 21 30307437 30307437 G T LTN1 Silent p.G1669G 0.22 TCGA-G2-A3VY-01 21 30419060 30419060 G C USP16 Missense_Mutation p.E477Q 0.15 tolerated(0.08) possibly_damaging(0.79) TCGA-G2-A3VY-01 21 30445989 30445989 G A CCT8 5'UTR 0.14 TCGA-G2-A3VY-01 21 33876247 33876247 G C EVA1C Missense_Mutation p.D291H 0.23 deleterious(0.03) possibly_damaging(0.517) TCGA-G2-A3VY-01 21 35147080 35147080 G T ITSN1 Silent p.R451R 0.26 TCGA-G2-A3VY-01 21 43187192 43187192 C G RIPK4 Missense_Mutation p.D4H 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-G2-A3VY-01 21 43833142 43833142 C G UBASH3A Missense_Mutation p.Q122E 0.19 tolerated(0.23) benign(0.025) TCGA-G2-A3VY-01 21 45222172 45222172 G C RRP1 Missense_Mutation p.E343Q 0.45 tolerated(0.07) possibly_damaging(0.616) TCGA-G2-A3VY-01 21 45475622 45475622 C G TRAPPC10 Missense_Mutation p.Q176E 0.46 tolerated(0.11) benign(0.444) TCGA-G2-A3VY-01 22 17468986 17468986 G A GAB4 Nonsense_Mutation p.Q184* 0.52 TCGA-G2-A3VY-01 22 18918658 18918658 C A PRODH Missense_Mutation p.M109I 0.31 deleterious(0.01) possibly_damaging(0.709) TCGA-G2-A3VY-01 22 19136549 19136549 C T GSC2 Silent p.A191A 0.44 TCGA-G2-A3VY-01 22 24324907 24324907 G T GSTT2 Nonsense_Mutation p.E97* 0.29 TCGA-G2-A3VY-01 22 30766456 30766456 G C CCDC157 Missense_Mutation p.E188Q 0.52 tolerated(0.93) benign(0.022) TCGA-G2-A3VY-01 22 31522449 31522449 C A INPP5J Missense_Mutation p.S85R 0.32 tolerated(0.08) benign(0.445) TCGA-G2-A3VY-01 22 32016599 32016599 G T PISD Missense_Mutation p.F281L 0.33 deleterious(0.01) possibly_damaging(0.779) TCGA-G2-A3VY-01 22 42780998 42780998 G C NFAM1 3'UTR 0.62 TCGA-G2-A3VY-01 22 43985982 43985982 C T EFCAB6 Missense_Mutation p.E1002K 0.39 deleterious(0.02) possibly_damaging(0.711) TCGA-G2-A3VY-01 22 50197935 50197952 GCCAGTAGCTGTGGGCTC - BRD1 In_Frame_Del p.R475_W480del 0.24 TCGA-G2-A3VY-01 2 107040523 107040523 C T RGPD3 Silent p.L1300L 0.15 TCGA-G2-A3VY-01 2 109388219 109388219 C T RANBP2 Silent p.L2638L 0.14 TCGA-G2-A3VY-01 2 112945175 112945175 C G FBLN7 3'UTR 0.18 TCGA-G2-A3VY-01 2 113147094 113147094 A G RGPD8 Missense_Mutation p.L1143P 0.13 tolerated(0.12) possibly_damaging(0.787) TCGA-G2-A3VY-01 2 113332748 113332748 C A POLR1B Missense_Mutation p.F950L 0.10 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 2 114399013 114399013 A G RABL2A Missense_Mutation p.T164A 0.21 deleterious(0.01) possibly_damaging(0.708) TCGA-G2-A3VY-01 2 125405445 125405445 G A CNTNAP5 Missense_Mutation p.E662K 0.29 deleterious(0.02) benign(0.371) TCGA-G2-A3VY-01 2 128016992 128016992 T C ERCC3 Silent p.E699E 0.37 TCGA-G2-A3VY-01 2 128367562 128367562 C G MYO7B Missense_Mutation p.Q1055E 0.29 tolerated(0.21) benign(0.002) TCGA-G2-A3VY-01 2 130900698 130900698 C T CCDC74B Intron 0.18 TCGA-G2-A3VY-01 2 133542301 133542301 C A NCKAP5 Nonsense_Mutation p.E695* 0.18 TCGA-G2-A3VY-01 2 136603845 136603845 G C MCM6 Missense_Mutation p.S724C 0.58 deleterious(0.03) possibly_damaging(0.888) TCGA-G2-A3VY-01 2 149528807 149528807 G A EPC2 Missense_Mutation p.R524Q 0.62 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 2 152477516 152477516 C G NEB Missense_Mutation p.E3493Q 0.50 probably_damaging(0.983) TCGA-G2-A3VY-01 2 152728976 152728976 C G CACNB4 Missense_Mutation p.G185R 0.12 deleterious(0.01) possibly_damaging(0.801) TCGA-G2-A3VY-01 2 157407191 157407191 G A GPD2 Missense_Mutation p.D302N 0.32 tolerated(0.46) benign(0.008) TCGA-G2-A3VY-01 2 160027154 160027154 G T TANC1 Nonsense_Mutation p.E397* 0.15 TCGA-G2-A3VY-01 2 160801453 160801453 G C PLA2R1 Missense_Mutation p.Q1370E 0.10 tolerated(0.69) benign(0.013) TCGA-G2-A3VY-01 2 162830786 162830786 G C SLC4A10 Missense_Mutation p.D1063H 0.09 deleterious(0.04) possibly_damaging(0.479) TCGA-G2-A3VY-01 2 167313506 167313506 C A SCN7A Missense_Mutation p.L388F 0.12 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 2 170050365 170050365 C T LRP2 Silent p.K2912K 0.17 TCGA-G2-A3VY-01 2 173891907 173891907 G T RAPGEF4 Missense_Mutation p.W826C 0.90 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 2 178705092 178705092 C T PDE11A Silent p.E462E 0.99 TCGA-G2-A3VY-01 2 179360322 179360322 G C PLEKHA3 Missense_Mutation p.E184Q 0.13 deleterious(0.05) benign(0.046) TCGA-G2-A3VY-01 2 179413724 179413724 C T TTN Missense_Mutation p.V30877M 0.54 TCGA-G2-A3VY-01 2 179435376 179435376 C G TTN Missense_Mutation p.K25161N 0.16 TCGA-G2-A3VY-01 2 179514605 179514605 C G TTN Missense_Mutation p.K13278N 0.34 TCGA-G2-A3VY-01 2 183817172 183817172 G T NCKAP1 Missense_Mutation p.S860R 0.22 tolerated(0.82) benign(0.138) TCGA-G2-A3VY-01 2 198257718 198257718 C G SF3B1 Missense_Mutation p.R1245T 0.14 tolerated(0.19) benign(0.004) TCGA-G2-A3VY-01 2 201369515 201369515 C T KCTD18 Missense_Mutation p.E110K 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A3VY-01 2 202251049 202251049 T C TRAK2 Missense_Mutation p.T619A 0.11 tolerated(0.11) possibly_damaging(0.624) TCGA-G2-A3VY-01 2 206659622 206659622 T C NRP2 Missense_Mutation p.L879P 0.49 deleterious(0) probably_damaging(0.973) TCGA-G2-A3VY-01 2 207621668 207621668 C A MDH1B Nonsense_Mutation p.E123* 0.28 TCGA-G2-A3VY-01 2 208631678 208631678 T A FZD5 3'UTR 0.55 TCGA-G2-A3VY-01 2 208631679 208631679 C G FZD5 3'UTR 0.52 TCGA-G2-A3VY-01 2 212248420 212248420 C G ERBB4 Missense_Mutation p.E1283Q 0.23 deleterious(0) probably_damaging(0.933) TCGA-G2-A3VY-01 2 219544719 219544719 C G STK36 Nonsense_Mutation p.S351* 0.38 TCGA-G2-A3VY-01 2 219870931 219870931 G C CCDC108 Missense_Mutation p.I1578M 0.82 deleterious(0.01) probably_damaging(0.997) TCGA-G2-A3VY-01 2 230911034 230911034 G C SLC16A14 Missense_Mutation p.Q270E 0.85 tolerated(0.95) benign(0.001) TCGA-G2-A3VY-01 2 234072504 234072504 C T INPP5D Silent p.I452I 0.84 TCGA-G2-A3VY-01 2 234749322 234749322 C G HJURP Missense_Mutation p.D702H 0.43 tolerated(0.14) benign(0.339) TCGA-G2-A3VY-01 2 242004846 242004846 G A SNED1 Missense_Mutation p.D949N 0.31 tolerated(0.08) probably_damaging(0.986) TCGA-G2-A3VY-01 2 24952432 24952432 C G NCOA1 Missense_Mutation p.I983M 0.16 tolerated(1) benign(0) TCGA-G2-A3VY-01 2 24985619 24985619 C G NCOA1 Missense_Mutation p.L1377V 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-G2-A3VY-01 2 26532908 26532908 C G GPR113 Silent p.V1048V 0.15 TCGA-G2-A3VY-01 2 27360495 27360495 G T C2orf53 Missense_Mutation p.H235N 0.20 deleterious(0.02) benign(0.069) TCGA-G2-A3VY-01 2 27559164 27559164 G C GTF3C2 Missense_Mutation p.S419C 0.19 tolerated(1) benign(0.002) TCGA-G2-A3VY-01 2 27603017 27603017 C G ZNF513 Missense_Mutation p.E52Q 0.06 tolerated(0.56) benign(0.403) TCGA-G2-A3VY-01 2 27804354 27804354 C T C2orf16 Missense_Mutation p.R1639C 0.14 tolerated(0.1) possibly_damaging(0.884) TCGA-G2-A3VY-01 2 27886635 27886635 C A SLC4A1AP Missense_Mutation p.R6S 0.19 tolerated_low_confidence(0.53) benign(0) TCGA-G2-A3VY-01 2 28248194 28248194 G A BRE Silent p.E134E 0.67 TCGA-G2-A3VY-01 2 28761192 28761192 C G PLB1 Missense_Mutation p.L188V 0.12 tolerated(0.51) benign(0.048) TCGA-G2-A3VY-01 2 33768679 33768679 T A RASGRP3 Missense_Mutation p.V460D 0.21 tolerated(0.69) probably_damaging(0.996) TCGA-G2-A3VY-01 2 36583615 36583615 C T CRIM1 Silent p.C60C 0.10 TCGA-G2-A3VY-01 2 37458816 37458816 C A CEBPZ 5'UTR 0.12 TCGA-G2-A3VY-01 2 37473327 37473327 G C NDUFAF7 Missense_Mutation p.D309H 0.14 deleterious(0.04) probably_damaging(0.986) TCGA-G2-A3VY-01 2 37474653 37474653 C G NDUFAF7 Missense_Mutation p.L331V 0.06 deleterious(0) probably_damaging(0.986) TCGA-G2-A3VY-01 2 38297783 38297783 G C CYP1B1 3'UTR 0.08 TCGA-G2-A3VY-01 2 44161983 44161983 C T LRPPRC Missense_Mutation p.D847N 0.11 tolerated(0.19) benign(0.009) TCGA-G2-A3VY-01 2 46583940 46583940 C G EPAS1 Silent p.L149L 0.38 TCGA-G2-A3VY-01 2 54883057 54883057 G T SPTBN1 Nonsense_Mutation p.E1990* 0.27 TCGA-G2-A3VY-01 2 55559821 55559821 C A CCDC88A Silent p.V912V 0.11 TCGA-G2-A3VY-01 2 61433904 61433904 G C USP34 Missense_Mutation p.Q3013E 0.16 tolerated(0.42) benign(0.001) TCGA-G2-A3VY-01 2 63631244 63631244 G A WDPCP Silent p.I458I 0.67 TCGA-G2-A3VY-01 2 64112904 64112904 G C UGP2 Missense_Mutation p.D253H 0.16 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 2 67637256 67637256 G C ETAA1 3'UTR 0.19 TCGA-G2-A3VY-01 2 71189921 71189921 T C ATP6V1B1 Missense_Mutation p.I267T 0.07 deleterious(0.03) probably_damaging(0.911) TCGA-G2-A3VY-01 2 71791217 71791217 C T DYSF Silent p.I813I 0.20 TCGA-G2-A3VY-01 2 73675948 73675948 C T ALMS1 Missense_Mutation p.S764L 0.39 benign(0.108) TCGA-G2-A3VY-01 2 73676289 73676289 C T ALMS1 Missense_Mutation p.H878Y 0.35 benign(0.113) TCGA-G2-A3VY-01 2 73677373 73677373 C G ALMS1 Nonsense_Mutation p.S1239* 0.35 TCGA-G2-A3VY-01 2 73677410 73677410 C T ALMS1 Silent p.V1251V 0.38 TCGA-G2-A3VY-01 2 73677968 73677968 C G ALMS1 Missense_Mutation p.F1437L 0.36 probably_damaging(0.916) TCGA-G2-A3VY-01 2 73678719 73678719 C G ALMS1 Missense_Mutation p.L1688V 0.35 benign(0.209) TCGA-G2-A3VY-01 2 73678860 73678860 C G ALMS1 Missense_Mutation p.L1735V 0.39 benign(0.051) TCGA-G2-A3VY-01 2 74699830 74699830 G A MRPL53 5'UTR 0.09 TCGA-G2-A3VY-01 2 74761668 74761668 C G LOXL3 Missense_Mutation p.E605Q 0.55 tolerated(0.88) possibly_damaging(0.892) TCGA-G2-A3VY-01 2 74787419 74787419 C G M1AP Splice_Site p.X428_splice 0.14 TCGA-G2-A3VY-01 2 80529574 80529574 G T LRRTM1 Silent p.L457L 0.12 TCGA-G2-A3VY-01 2 86315961 86315961 G T POLR1A Silent p.L191L 0.16 TCGA-G2-A3VY-01 2 86718100 86718100 C G KDM3A Missense_Mutation p.Q1224E 0.59 tolerated(1) probably_damaging(0.994) TCGA-G2-A3VY-01 2 86832071 86832071 G C RNF103 Nonsense_Mutation p.S318* 0.14 TCGA-G2-A3VY-01 2 8933973 8933973 G A KIDINS220 Nonsense_Mutation p.Q415* 0.09 TCGA-G2-A3VY-01 2 97369274 97369274 G A LMAN2L 3'Flank 0.06 TCGA-G2-A3VY-01 2 97427901 97427901 G A CNNM4 Missense_Mutation p.D389N 0.12 tolerated(0.13) benign(0.065) TCGA-G2-A3VY-01 2 97866080 97866080 G A ANKRD36 Missense_Mutation p.R922Q 0.13 tolerated_low_confidence(1) benign(0.238) TCGA-G2-A3VY-01 3 108074154 108074154 C G HHLA2 Nonsense_Mutation p.S204* 0.61 TCGA-G2-A3VY-01 3 108572606 108572606 C G TRAT1 Missense_Mutation p.S148C 0.34 deleterious(0) probably_damaging(0.937) TCGA-G2-A3VY-01 3 113500007 113500007 C G ATP6V1A Missense_Mutation p.Q65E 0.24 deleterious(0) possibly_damaging(0.697) TCGA-G2-A3VY-01 3 121202299 121202299 G C POLQ Missense_Mutation p.I1968M 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A3VY-01 3 122126199 122126214 TGGTAGGATGCATCTT - FAM162A Frame_Shift_Del p.V112Afs*16 0.11 TCGA-G2-A3VY-01 3 122160940 122160940 G C KPNA1 Missense_Mutation p.S314C 0.14 deleterious(0) probably_damaging(0.993) TCGA-G2-A3VY-01 3 123166643 123166643 C T ADCY5 Silent p.V250V 0.17 TCGA-G2-A3VY-01 3 124748209 124748209 G A HEG1 Missense_Mutation p.S147F 0.30 tolerated_low_confidence(0.15) benign(0.003) TCGA-G2-A3VY-01 3 12611602 12611602 G C MKRN2 Missense_Mutation p.G63A 0.25 tolerated(0.48) benign(0.021) TCGA-G2-A3VY-01 3 129269986 129269986 G C H1FOO Missense_Mutation p.V282L 0.21 tolerated(0.34) benign(0) TCGA-G2-A3VY-01 3 131101103 131101103 G C NUDT16 Missense_Mutation p.E118Q 0.24 tolerated(0.07) benign(0.378) TCGA-G2-A3VY-01 3 133306961 133306961 C T CDV3 3'UTR 0.28 TCGA-G2-A3VY-01 3 142606552 142606552 C T PCOLCE2 Missense_Mutation p.G51R 0.37 tolerated(0.1) benign(0.196) TCGA-G2-A3VY-01 3 158314723 158314723 G C MLF1 Missense_Mutation p.E121Q 0.77 tolerated(1) benign(0.004) TCGA-G2-A3VY-01 3 160150149 160150149 G C SMC4 Missense_Mutation p.D1126H 0.19 deleterious(0.01) benign(0.155) TCGA-G2-A3VY-01 3 160786817 160786817 G A PPM1L Missense_Mutation p.E319K 0.56 tolerated(0.09) possibly_damaging(0.574) TCGA-G2-A3VY-01 3 170020896 170020896 C G PRKCI Missense_Mutation p.S591C 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-G2-A3VY-01 3 170108880 170108880 G C SKIL Missense_Mutation p.Q576H 0.77 tolerated(0.22) benign(0.082) TCGA-G2-A3VY-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.22 deleterious(0.04) probably_damaging(0.96) TCGA-G2-A3VY-01 3 183097188 183097188 C G MCF2L2 Missense_Mutation p.E58Q 0.71 tolerated(0.34) benign(0.012) TCGA-G2-A3VY-01 3 184094082 184094082 T G THPO 5'UTR 0.32 TCGA-G2-A3VY-01 3 184107170 184107170 G A CHRD Missense_Mutation p.R943K 0.30 tolerated_low_confidence(0.35) benign(0.006) TCGA-G2-A3VY-01 3 186334313 186334313 C G AHSG Missense_Mutation p.P136A 0.16 tolerated(0.27) probably_damaging(0.943) TCGA-G2-A3VY-01 3 190120206 190120206 T C CLDN16 Silent p.D135D 0.24 TCGA-G2-A3VY-01 3 194371614 194371614 G C LSG1 Nonsense_Mutation p.S472* 0.33 TCGA-G2-A3VY-01 3 195251628 195251628 G A PPP1R2 Silent p.I99I 0.40 TCGA-G2-A3VY-01 3 20212127 20212127 C G SGOL1 Intron 0.30 TCGA-G2-A3VY-01 3 23930783 23930783 C G UBE2E1 Intron 0.11 TCGA-G2-A3VY-01 3 32932040 32932040 G A TRIM71 Silent p.R448R 0.37 TCGA-G2-A3VY-01 3 33109743 33109743 G C GLB1 Missense_Mutation p.L146V 0.24 tolerated(1) benign(0) TCGA-G2-A3VY-01 3 33614798 33614798 C G CLASP2 Missense_Mutation p.D844H 0.36 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 3 37035095 37035095 C T MLH1 Silent p.I19I 0.31 TCGA-G2-A3VY-01 3 37368570 37368570 G A GOLGA4 Silent p.Q1753Q 0.27 TCGA-G2-A3VY-01 3 38017309 38017309 G A CTDSPL Missense_Mutation p.R210H 0.06 deleterious(0.01) benign(0.152) TCGA-G2-A3VY-01 3 38292922 38292922 C G OXSR1 Silent p.L468L 0.25 TCGA-G2-A3VY-01 3 3887605 3887605 C G LRRN1 Missense_Mutation p.S427C 0.44 deleterious(0) possibly_damaging(0.869) TCGA-G2-A3VY-01 3 39166841 39166841 G T TTC21A Missense_Mutation p.A412S 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-G2-A3VY-01 3 39307166 39307166 C T CX3CR1 Missense_Mutation p.E311K 0.35 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 3 39374656 39374656 G A CCR8 Silent p.L278L 0.46 TCGA-G2-A3VY-01 3 42687461 42687461 C T NKTR Silent p.Y1461Y 0.22 TCGA-G2-A3VY-01 3 42793446 42793446 C G CCDC13 Missense_Mutation p.Q195H 0.20 deleterious(0.03) benign(0.036) TCGA-G2-A3VY-01 3 42916916 42916916 C G CYP8B1 Silent p.L131L 0.27 TCGA-G2-A3VY-01 3 4508701 4508701 G C SUMF1 Missense_Mutation p.P77A 0.25 tolerated(0.27) benign(0.003) TCGA-G2-A3VY-01 3 47098400 47098400 G C SETD2 Missense_Mutation p.Q2292E 0.52 deleterious(0) probably_damaging(0.977) TCGA-G2-A3VY-01 3 47539889 47539889 C G ELP6 Missense_Mutation p.D187H 0.50 deleterious(0) probably_damaging(0.958) TCGA-G2-A3VY-01 3 48310738 48310738 G T ZNF589 3'UTR 0.38 TCGA-G2-A3VY-01 3 4842241 4842241 C T ITPR1 Missense_Mutation p.S2340L 0.20 tolerated(0.58) probably_damaging(0.977) TCGA-G2-A3VY-01 3 4856165 4856165 G T ITPR1 Silent p.L2525L 0.30 TCGA-G2-A3VY-01 3 48678958 48678958 C T CELSR3 Splice_Site p.X2942_splice 0.57 TCGA-G2-A3VY-01 3 48699135 48699135 G C CELSR3 Missense_Mutation p.N311K 0.34 tolerated(1) benign(0.012) TCGA-G2-A3VY-01 3 48716150 48716150 G C NCKIPSD Missense_Mutation p.F604L 0.28 tolerated(0.1) possibly_damaging(0.549) TCGA-G2-A3VY-01 3 49153551 49153551 G C USP19 Missense_Mutation p.S467C 0.16 deleterious(0.04) possibly_damaging(0.906) TCGA-G2-A3VY-01 3 49293674 49293674 G A CCDC36 Silent p.L248L 0.61 TCGA-G2-A3VY-01 3 51418783 51418783 C T DOCK3 Silent p.V1962V 0.31 TCGA-G2-A3VY-01 3 5241290 5241290 C T EDEM1 Missense_Mutation p.S199L 0.50 tolerated(0.75) benign(0.14) TCGA-G2-A3VY-01 3 52800388 52800388 A C NEK4 Missense_Mutation p.L122V 0.60 deleterious(0) probably_damaging(0.996) TCGA-G2-A3VY-01 3 56655611 56655611 G A CCDC66 Missense_Mutation p.E938K 0.33 tolerated(0.2) benign(0.117) TCGA-G2-A3VY-01 3 57631450 57631450 G C DENND6A Missense_Mutation p.F325L 0.26 deleterious(0.02) probably_damaging(0.953) TCGA-G2-A3VY-01 3 58395832 58395832 G C PXK Missense_Mutation p.A471P 0.38 tolerated(0.08) possibly_damaging(0.643) TCGA-G2-A3VY-01 3 97852408 97852408 C G OR5H1 Missense_Mutation p.I289M 0.19 deleterious(0) probably_damaging(0.98) TCGA-G2-A3VY-01 3 98189098 98189098 C G OR5K1 Missense_Mutation p.F226L 0.55 tolerated(1) benign(0.01) TCGA-G2-A3VY-01 4 107170104 107170104 C T TBCK Missense_Mutation p.E232K 0.56 deleterious(0.04) possibly_damaging(0.775) TCGA-G2-A3VY-01 4 108641388 108641388 G C PAPSS1 5'UTR 0.68 TCGA-G2-A3VY-01 4 110384480 110384480 C G SEC24B Nonsense_Mutation p.S186* 0.23 TCGA-G2-A3VY-01 4 121828712 121828712 C A PRDM5 Missense_Mutation p.G32C 0.42 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 4 123274148 123274148 G C KIAA1109 Missense_Mutation p.E4647Q 0.38 possibly_damaging(0.866) TCGA-G2-A3VY-01 4 128665848 128665848 G T SLC25A31 Missense_Mutation p.G85V 0.19 deleterious(0.02) probably_damaging(0.972) TCGA-G2-A3VY-01 4 13604756 13604756 C G BOD1L1 Missense_Mutation p.L1256F 0.09 benign(0.025) TCGA-G2-A3VY-01 4 140005339 140005339 C T ELF2 Intron 0.32 TCGA-G2-A3VY-01 4 141832307 141832307 T G RNF150 Missense_Mutation p.T397P 0.12 tolerated(0.17) benign(0.216) TCGA-G2-A3VY-01 4 165890639 165890639 C T TRIM61 Silent p.L172L 0.33 TCGA-G2-A3VY-01 4 190947576 190947576 T A FRG2 Missense_Mutation p.R98S 0.28 deleterious(0) possibly_damaging(0.9) TCGA-G2-A3VY-01 4 25760599 25760599 G C SEL1L3 Missense_Mutation p.S1016C 0.46 tolerated(0.06) possibly_damaging(0.738) TCGA-G2-A3VY-01 4 26417162 26417162 T C RBPJ Missense_Mutation p.M87T 0.27 tolerated(0.41) possibly_damaging(0.524) TCGA-G2-A3VY-01 4 30723251 30723251 G T PCDH7 Missense_Mutation p.E69D 0.15 tolerated(0.14) probably_damaging(0.978) TCGA-G2-A3VY-01 4 30724469 30724469 C T PCDH7 Silent p.D475D 0.19 TCGA-G2-A3VY-01 4 39280196 39280196 G C WDR19 Missense_Mutation p.E1319Q 0.39 deleterious(0.01) benign(0.138) TCGA-G2-A3VY-01 4 48078437 48078437 G C TXK Nonsense_Mutation p.S407* 0.39 TCGA-G2-A3VY-01 4 48078458 48078458 G A TXK Missense_Mutation p.S400L 0.34 deleterious(0.03) benign(0.111) TCGA-G2-A3VY-01 4 48371957 48371957 C T SLAIN2 Missense_Mutation p.P161S 0.15 deleterious(0) possibly_damaging(0.73) TCGA-G2-A3VY-01 4 57272738 57272738 C T PPAT Missense_Mutation p.V109I 0.31 tolerated(0.16) possibly_damaging(0.891) TCGA-G2-A3VY-01 4 5851128 5851128 C G CRMP1 Missense_Mutation p.L318F 0.22 deleterious(0.01) benign(0.086) TCGA-G2-A3VY-01 4 68530981 68530981 C T UBA6 Missense_Mutation p.D275N 0.24 tolerated(0.07) benign(0.012) TCGA-G2-A3VY-01 4 69202901 69202901 C G YTHDC1 Missense_Mutation p.E243Q 0.18 tolerated_low_confidence(0.21) unknown(0) TCGA-G2-A3VY-01 4 71824646 71824646 C T MOB1B Missense_Mutation p.H29Y 0.72 deleterious(0.02) benign(0.012) TCGA-G2-A3VY-01 4 71824735 71824735 C T MOB1B Silent p.L58L 0.56 TCGA-G2-A3VY-01 4 77952017 77952017 G T SEPT11 Nonsense_Mutation p.E390* 0.20 TCGA-G2-A3VY-01 4 83552481 83552481 C G SCD5 Nonstop_Mutation p.*331Sext*52 0.22 TCGA-G2-A3VY-01 4 83984258 83984258 C G COPS4 Missense_Mutation p.L249V 0.27 deleterious(0) probably_damaging(0.986) TCGA-G2-A3VY-01 4 87622564 87622564 G C PTPN13 Missense_Mutation p.E269Q 0.28 tolerated(0.39) possibly_damaging(0.907) TCGA-G2-A3VY-01 4 87749251 87749251 G C SLC10A6 Missense_Mutation p.S219C 0.14 deleterious(0.03) benign(0.436) TCGA-G2-A3VY-01 4 88084622 88084622 C G KLHL8 3'UTR 0.22 TCGA-G2-A3VY-01 4 89363544 89363544 G C HERC6 Missense_Mutation p.E1001Q 0.18 deleterious(0.03) probably_damaging(0.92) TCGA-G2-A3VY-01 4 89912254 89912254 C G FAM13A Missense_Mutation p.E159Q 0.23 tolerated(1) benign(0.078) TCGA-G2-A3VY-01 5 112238167 112238167 C G REEP5 Silent p.L87L 0.30 TCGA-G2-A3VY-01 5 11411762 11411762 C A CTNND2 Missense_Mutation p.G109C 0.60 deleterious(0.03) possibly_damaging(0.894) TCGA-G2-A3VY-01 5 121413262 121413262 G A LOX Missense_Mutation p.S140L 0.82 tolerated(0.28) benign(0.016) TCGA-G2-A3VY-01 5 126862374 126862374 C T PRRC1 Silent p.T186T 0.49 TCGA-G2-A3VY-01 5 131911478 131911478 G C RAD50 Missense_Mutation p.E75Q 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-G2-A3VY-01 5 137801586 137801586 C A EGR1 Missense_Mutation p.P46T 0.93 tolerated_low_confidence(0.75) unknown(0) TCGA-G2-A3VY-01 5 140432144 140432144 G C PCDHB1 Missense_Mutation p.Q363H 0.38 deleterious(0) possibly_damaging(0.682) TCGA-G2-A3VY-01 5 140476693 140476693 C T PCDHB2 Silent p.I773I 0.82 TCGA-G2-A3VY-01 5 140516663 140516663 G A PCDHB5 Silent p.L549L 0.36 TCGA-G2-A3VY-01 5 140763490 140763490 G A PCDHGA7 Missense_Mutation p.D342N 0.87 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-G2-A3VY-01 5 140763541 140763541 G A PCDHGA7 Missense_Mutation p.D359N 0.87 tolerated_low_confidence(1) benign(0.029) TCGA-G2-A3VY-01 5 147449904 147449904 C T SPINK5 Nonsense_Mutation p.Q34* 0.86 TCGA-G2-A3VY-01 5 148754083 148754083 G A IL17B Missense_Mutation p.T131I 0.53 deleterious(0) probably_damaging(0.997) TCGA-G2-A3VY-01 5 150660605 150660605 A G SLC36A3 Missense_Mutation p.S413P 0.42 tolerated(0.22) possibly_damaging(0.708) TCGA-G2-A3VY-01 5 154268890 154268890 C G GEMIN5 Missense_Mutation p.E1450D 0.41 tolerated(0.44) benign(0.008) TCGA-G2-A3VY-01 5 156659373 156659373 G A ITK Missense_Mutation p.R246Q 0.89 deleterious(0) probably_damaging(0.991) TCGA-G2-A3VY-01 5 16769282 16769282 C G MYO10 Missense_Mutation p.E321Q 0.17 deleterious(0.04) benign(0.193) TCGA-G2-A3VY-01 5 171544538 171544538 C T STK10 Missense_Mutation p.R156Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-G2-A3VY-01 5 176079893 176079893 C G TSPAN17 Silent p.L145L 0.05 TCGA-G2-A3VY-01 5 176304229 176304229 G T UNC5A Missense_Mutation p.R472L 0.91 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 5 179290439 179290439 C T TBC1D9B 3'UTR 0.29 TCGA-G2-A3VY-01 5 179707519 179707519 C G MAPK9 Missense_Mutation p.V15L 0.15 tolerated(0.44) benign(0.002) TCGA-G2-A3VY-01 5 31317550 31317550 G C CDH6 Missense_Mutation p.L527F 0.20 deleterious(0.02) possibly_damaging(0.597) TCGA-G2-A3VY-01 5 32074700 32074700 C T PDZD2 Missense_Mutation p.S1163F 0.62 deleterious(0) possibly_damaging(0.51) TCGA-G2-A3VY-01 5 37016225 37016225 G A NIPBL Missense_Mutation p.E1577K 0.62 deleterious(0) possibly_damaging(0.891) TCGA-G2-A3VY-01 5 38407999 38407999 G C EGFLAM Missense_Mutation p.E414Q 0.16 deleterious(0.04) benign(0.391) TCGA-G2-A3VY-01 5 45396805 45396805 G A HCN1 Missense_Mutation p.S340F 0.23 tolerated(0.05) benign(0.037) TCGA-G2-A3VY-01 5 54581607 54581607 C G DHX29 Silent p.L383L 0.44 TCGA-G2-A3VY-01 5 74035829 74035829 C G GFM2 Missense_Mutation p.R355P 0.95 tolerated(0.1) possibly_damaging(0.626) TCGA-G2-A3VY-01 5 76736794 76736794 G A WDR41 Silent p.V242V 0.28 TCGA-G2-A3VY-01 5 79473155 79473155 G C SERINC5 Missense_Mutation p.Q147E 0.88 tolerated(1) possibly_damaging(0.524) TCGA-G2-A3VY-01 5 94834293 94834293 G C TTC37 Missense_Mutation p.S1115C 0.42 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 5 95158310 95158310 G C GLRX Missense_Mutation p.I19M 0.41 tolerated(0.11) possibly_damaging(0.708) TCGA-G2-A3VY-01 5 96219518 96219518 G C ERAP2 Missense_Mutation p.E200Q 0.47 deleterious(0.02) benign(0.415) TCGA-G2-A3VY-01 5 96249154 96249154 C T ERAP2 Silent p.L884L 0.30 TCGA-G2-A3VY-01 5 96503580 96503580 C G RIOK2 Missense_Mutation p.E330Q 0.42 tolerated(0.07) benign(0.128) TCGA-G2-A3VY-01 6 107391788 107391788 G C BEND3 Missense_Mutation p.L203V 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G2-A3VY-01 6 109766413 109766413 C T MICAL1 Silent p.L956L 0.45 TCGA-G2-A3VY-01 6 111697217 111697217 C T REV3L Missense_Mutation p.E781K 0.41 deleterious(0) possibly_damaging(0.799) TCGA-G2-A3VY-01 6 112420507 112420507 C A FAM229B Silent p.T7T 0.41 TCGA-G2-A3VY-01 6 112671551 112671561 ACTTAGAAGAA - RFPL4B Frame_Shift_Del p.L215Pfs*4 0.24 TCGA-G2-A3VY-01 6 132785148 132785148 C T STX7 Missense_Mutation p.R226K 0.42 tolerated(0.15) possibly_damaging(0.715) TCGA-G2-A3VY-01 6 132910508 132910508 G C TAAR5 Silent p.L106L 0.48 TCGA-G2-A3VY-01 6 146350573 146350573 C T GRM1 5'UTR 0.30 TCGA-G2-A3VY-01 6 146350756 146350756 C T GRM1 Nonsense_Mutation p.Q35* 0.34 TCGA-G2-A3VY-01 6 152583209 152583209 C G SYNE1 Missense_Mutation p.Q6310H 0.33 benign(0.015) TCGA-G2-A3VY-01 6 152599392 152599392 C G SYNE1 Missense_Mutation p.Q6135H 0.06 probably_damaging(0.979) TCGA-G2-A3VY-01 6 159457377 159457377 C G TAGAP Missense_Mutation p.E560Q 0.14 tolerated(0.12) benign(0.045) TCGA-G2-A3VY-01 6 166923801 166923801 C T RPS6KA2 Missense_Mutation p.E123K 0.40 tolerated(0.1) benign(0.396) TCGA-G2-A3VY-01 6 168947789 168947789 C G SMOC2 Missense_Mutation p.L179V 0.39 tolerated(0.33) benign(0.104) TCGA-G2-A3VY-01 6 24667557 24667557 G C ACOT13 Missense_Mutation p.E22D 0.30 tolerated(1) benign(0) TCGA-G2-A3VY-01 6 24843425 24843425 C G FAM65B Missense_Mutation p.E529Q 0.20 tolerated(0.24) benign(0.056) TCGA-G2-A3VY-01 6 25581557 25581557 C T LRRC16A Missense_Mutation p.R966W 0.76 deleterious(0.01) possibly_damaging(0.556) TCGA-G2-A3VY-01 6 27799149 27799149 C T HIST1H4K Missense_Mutation p.E53K 0.62 tolerated(0.1) benign(0.122) TCGA-G2-A3VY-01 6 30624524 30624524 G C DHX16 Missense_Mutation p.Q721E 0.27 deleterious(0) unknown(0) TCGA-G2-A3VY-01 6 31237268 31237268 A C HLA-C Splice_Site p.X350_splice 0.29 TCGA-G2-A3VY-01 6 32021354 32021354 C T TNXB Missense_Mutation p.E2866K 0.07 possibly_damaging(0.502) TCGA-G2-A3VY-01 6 32290900 32290900 G C C6orf10 Missense_Mutation p.P185A 0.83 tolerated(0.06) benign(0.013) TCGA-G2-A3VY-01 6 32290904 32290904 C T C6orf10 Missense_Mutation p.M183I 0.83 tolerated(0.52) benign(0) TCGA-G2-A3VY-01 6 33657075 33657075 C T ITPR3 Missense_Mutation p.A2252V 0.05 tolerated(0.81) benign(0.001) TCGA-G2-A3VY-01 6 35443426 35443426 G A TEAD3 Nonsense_Mutation p.Q320* 0.30 TCGA-G2-A3VY-01 6 35478728 35478728 C G TULP1 Missense_Mutation p.E137Q 0.37 tolerated_low_confidence(0.06) benign(0.007) TCGA-G2-A3VY-01 6 35773514 35773514 C T LHFPL5 Nonsense_Mutation p.R23* 0.29 TCGA-G2-A3VY-01 6 38561774 38561774 A G BTBD9 Missense_Mutation p.V172A 0.26 deleterious(0) unknown(0) TCGA-G2-A3VY-01 6 38670780 38670780 G A GLO1 Silent p.L17L 0.91 TCGA-G2-A3VY-01 6 43322436 43322436 G C ZNF318 Missense_Mutation p.S879C 0.94 probably_damaging(0.998) TCGA-G2-A3VY-01 6 43608355 43608355 G C MAD2L1BP 3'UTR 0.35 TCGA-G2-A3VY-01 6 47847059 47847059 A C PTCHD4 Silent p.V507V 0.75 TCGA-G2-A3VY-01 6 50740451 50740451 A G TFAP2D Silent p.K411K 0.33 TCGA-G2-A3VY-01 6 52615459 52615459 C G GSTA2 Missense_Mutation p.K195N 0.58 tolerated(0.08) benign(0.268) TCGA-G2-A3VY-01 6 69949067 69949067 C T BAI3 Silent p.I921I 0.46 TCGA-G2-A3VY-01 6 70964891 70964891 T G COL9A1 Silent p.R525R 0.39 TCGA-G2-A3VY-01 6 99842058 99842058 C A COQ3 5'UTR 0.50 TCGA-G2-A3VY-01 7 100032928 100032928 C G PPP1R35 3'UTR 0.15 TCGA-G2-A3VY-01 7 100802372 100802372 G A AP1S1 Silent p.E108E 0.11 TCGA-G2-A3VY-01 7 100808035 100808035 C T VGF Silent p.A30A 0.16 TCGA-G2-A3VY-01 7 102113578 102113578 C T POLR2J 3'UTR 0.13 TCGA-G2-A3VY-01 7 102996214 102996214 G C PSMC2 Missense_Mutation p.Q88H 0.57 tolerated(0.09) benign(0.002) TCGA-G2-A3VY-01 7 104748167 104748167 C T KMT2E Missense_Mutation p.T1088I 0.09 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-G2-A3VY-01 7 107564523 107564523 C G LAMB1 Missense_Mutation p.R1745T 0.63 tolerated(0.2) benign(0.044) TCGA-G2-A3VY-01 7 107566684 107566684 C G LAMB1 Missense_Mutation p.E1670Q 0.15 tolerated(0.35) benign(0.128) TCGA-G2-A3VY-01 7 107849877 107849877 C G NRCAM Missense_Mutation p.V355L 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-G2-A3VY-01 7 114299708 114299708 C T FOXP2 Missense_Mutation p.R568C 0.15 deleterious(0) probably_damaging(0.989) TCGA-G2-A3VY-01 7 117232152 117232152 T C CFTR Missense_Mutation p.L644P 0.21 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 7 121773712 121773712 T A AASS Missense_Mutation p.K23N 0.60 tolerated(0.08) benign(0.273) TCGA-G2-A3VY-01 7 122342732 122342732 G C RNF148 Missense_Mutation p.L25V 0.15 tolerated(0.23) probably_damaging(0.978) TCGA-G2-A3VY-01 7 122839945 122839945 G A SLC13A1 Missense_Mutation p.T19I 0.54 tolerated(0.23) benign(0.162) TCGA-G2-A3VY-01 7 123152297 123152297 G C IQUB Nonsense_Mutation p.S33* 0.13 TCGA-G2-A3VY-01 7 123594167 123594167 C G SPAM1 Silent p.L181L 0.23 TCGA-G2-A3VY-01 7 127014383 127014383 G A ZNF800 Missense_Mutation p.S336F 0.37 deleterious(0.01) possibly_damaging(0.474) TCGA-G2-A3VY-01 7 128407602 128407602 G A CALU Missense_Mutation p.D254N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A3VY-01 7 135303333 135303333 A C NUP205 Missense_Mutation p.L1315F 0.17 deleterious(0) probably_damaging(0.998) TCGA-G2-A3VY-01 7 137271945 137271945 G C DGKI Missense_Mutation p.I441M 0.56 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 7 138588413 138588413 G A KIAA1549 Missense_Mutation p.A1197V 0.19 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 7 139715540 139715540 C G TBXAS1 Missense_Mutation p.A462G 0.12 tolerated(0.13) possibly_damaging(0.515) TCGA-G2-A3VY-01 7 142028501 142028501 G T TRBV6-1 Missense_Mutation p.V79F 0.21 tolerated(0.08) benign(0.347) TCGA-G2-A3VY-01 7 142459637 142459637 G A PRSS1 Silent p.V71V 0.06 TCGA-G2-A3VY-01 7 142919411 142919411 C A TAS2R40 Missense_Mutation p.F80L 0.24 tolerated(0.89) benign(0.006) TCGA-G2-A3VY-01 7 142960587 142960587 G A GSTK1 5'UTR 0.18 TCGA-G2-A3VY-01 7 143826871 143826871 C T OR2A14 Silent p.A222A 0.48 TCGA-G2-A3VY-01 7 148463737 148463737 G A CUL1 Missense_Mutation p.E292K 0.20 deleterious(0.01) possibly_damaging(0.512) TCGA-G2-A3VY-01 7 148702271 148702271 G C PDIA4 Missense_Mutation p.S495C 0.05 deleterious(0.01) possibly_damaging(0.82) TCGA-G2-A3VY-01 7 150737621 150737621 G C ABCB8 Missense_Mutation p.E430Q 0.43 tolerated(0.09) possibly_damaging(0.872) TCGA-G2-A3VY-01 7 150737667 150737667 G T ABCB8 Missense_Mutation p.C445F 0.40 tolerated(0.71) benign(0.003) TCGA-G2-A3VY-01 7 151962147 151962147 T A KMT2C Missense_Mutation p.E387V 0.09 possibly_damaging(0.772) TCGA-G2-A3VY-01 7 152139953 152139953 G C AC005631.1 3'Flank 0.18 TCGA-G2-A3VY-01 7 155534734 155534734 G A RBM33 Silent p.T757T 0.18 TCGA-G2-A3VY-01 7 15666538 15666538 G A MEOX2 Nonsense_Mutation p.Q175* 0.17 TCGA-G2-A3VY-01 7 27211618 27211618 C T HOXA10 Missense_Mutation p.R378K 0.24 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 7 29519859 29519859 C G CHN2 Intron 0.24 TCGA-G2-A3VY-01 7 36438741 36438741 G A ANLN Missense_Mutation p.E76K 0.24 tolerated(0.16) benign(0.254) TCGA-G2-A3VY-01 7 48450206 48450206 T C ABCA13 Missense_Mutation p.C4054R 0.36 probably_damaging(0.976) TCGA-G2-A3VY-01 7 6797340 6797340 A T RSPH10B2 Missense_Mutation p.K11I 0.21 deleterious(0) benign(0.027) TCGA-G2-A3VY-01 7 87060748 87060748 C A ABCB4 Missense_Mutation p.G622V 0.13 deleterious(0) probably_damaging(0.988) TCGA-G2-A3VY-01 7 87485664 87485664 T A SLC25A40 Missense_Mutation p.T34S 0.12 deleterious(0) possibly_damaging(0.771) TCGA-G2-A3VY-01 7 87743932 87743932 C G ADAM22 Silent p.L169L 0.16 TCGA-G2-A3VY-01 7 92848468 92848468 T A HEPACAM2 Missense_Mutation p.I126F 0.22 tolerated(0.06) probably_damaging(0.949) TCGA-G2-A3VY-01 7 94293033 94293033 G A PEG10 Silent p.E55E 0.13 TCGA-G2-A3VY-01 7 99755004 99755004 A T C7orf43 Missense_Mutation p.V239E 0.11 deleterious(0) benign(0.192) TCGA-G2-A3VY-01 8 100844696 100844696 G C VPS13B Missense_Mutation p.D3169H 0.35 tolerated(0.05) possibly_damaging(0.861) TCGA-G2-A3VY-01 8 100866115 100866115 G A VPS13B Missense_Mutation p.E3525K 0.18 tolerated(0.06) benign(0.292) TCGA-G2-A3VY-01 8 101253173 101253173 G C SPAG1 Missense_Mutation p.E902Q 0.08 deleterious(0.01) possibly_damaging(0.475) TCGA-G2-A3VY-01 8 101936227 101936245 TGTATGACTCTTCACTTAA - YWHAZ Frame_Shift_Del p.L206Kfs*5 0.22 TCGA-G2-A3VY-01 8 103274140 103274140 T C UBR5 Intron 0.20 TCGA-G2-A3VY-01 8 103298599 103298599 G C UBR5 Missense_Mutation p.S1735C 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-G2-A3VY-01 8 104337017 104337017 G A FZD6 Missense_Mutation p.R228K 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-G2-A3VY-01 8 104955043 104955043 C T RIMS2 Missense_Mutation p.H864Y 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-G2-A3VY-01 8 106815184 106815184 C G ZFPM2 Missense_Mutation p.N958K 0.19 tolerated(0.1) benign(0.046) TCGA-G2-A3VY-01 8 114389056 114389056 G C CSMD3 Intron 0.19 TCGA-G2-A3VY-01 8 120768248 120768248 G A TAF2 Missense_Mutation p.S959F 0.28 tolerated(0.42) benign(0.01) TCGA-G2-A3VY-01 8 124109655 124109655 G C TBC1D31 Missense_Mutation p.D269H 0.06 deleterious(0) possibly_damaging(0.841) TCGA-G2-A3VY-01 8 124243745 124243745 A C C8orf76 Missense_Mutation p.F204V 0.43 tolerated(0.52) benign(0.007) TCGA-G2-A3VY-01 8 124267094 124267094 G C ZHX1 Missense_Mutation p.Q365E 0.13 deleterious(0.03) possibly_damaging(0.482) TCGA-G2-A3VY-01 8 124453558 124453558 A G WDYHV1 Missense_Mutation p.N174S 0.72 deleterious(0.03) probably_damaging(0.96) TCGA-G2-A3VY-01 8 125487416 125487416 C G RNF139 Silent p.L22L 0.10 TCGA-G2-A3VY-01 8 125499414 125499414 C G RNF139 Missense_Mutation p.I508M 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-G2-A3VY-01 8 131140337 131140337 C T ASAP1 Splice_Site p.X406_splice 0.41 TCGA-G2-A3VY-01 8 133879281 133879281 C T TG Silent p.A12A 0.27 TCGA-G2-A3VY-01 8 134057253 134057253 C G SLA Missense_Mutation p.E194Q 0.08 tolerated(0.43) probably_damaging(0.999) TCGA-G2-A3VY-01 8 134108561 134108561 C T TG Silent p.L2506L 0.10 TCGA-G2-A3VY-01 8 134240043 134240043 A C WISP1 3'UTR 0.15 TCGA-G2-A3VY-01 8 140744407 140744407 C T TRAPPC9 Missense_Mutation p.V1130M 0.42 tolerated(0.1) benign(0.027) TCGA-G2-A3VY-01 8 141525224 141525224 G C CHRAC1 Splice_Site p.X92_splice 0.06 TCGA-G2-A3VY-01 8 144810771 144810771 G A FAM83H Missense_Mutation p.S287L 0.33 tolerated(0.18) benign(0.23) TCGA-G2-A3VY-01 8 144812730 144812730 G A FAM83H Missense_Mutation p.S8F 0.21 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 8 144942543 144942543 C T EPPK1 Missense_Mutation p.E1627K 0.24 benign(0.232) TCGA-G2-A3VY-01 8 145059158 145059158 C G PARP10 Missense_Mutation p.G338R 0.49 deleterious(0.03) benign(0.059) TCGA-G2-A3VY-01 8 145140309 145140309 G T GPAA1 Nonsense_Mutation p.E460* 0.10 TCGA-G2-A3VY-01 8 145140621 145140621 G T GPAA1 Missense_Mutation p.A533S 0.08 tolerated(0.06) benign(0.02) TCGA-G2-A3VY-01 8 146067042 146067042 C G ZNF7 Missense_Mutation p.L184V 0.13 tolerated(0.43) benign(0) TCGA-G2-A3VY-01 8 26238918 26238918 T C BNIP3L 5'Flank 1.00 TCGA-G2-A3VY-01 8 28196682 28196682 C A PNOC Silent p.L84L 0.84 TCGA-G2-A3VY-01 8 32617996 32617996 C T NRG1 Intron 0.25 TCGA-G2-A3VY-01 8 36697995 36697995 G C KCNU1 Missense_Mutation p.Q511H 0.12 tolerated(0.48) benign(0.004) TCGA-G2-A3VY-01 8 48973350 48973350 C G UBE2V2 Missense_Mutation p.L134V 0.12 deleterious(0.01) benign(0.279) TCGA-G2-A3VY-01 8 61654316 61654316 C A CHD7 Missense_Mutation p.P109T 0.42 possibly_damaging(0.641) TCGA-G2-A3VY-01 8 66963882 66963882 G C DNAJC5B Missense_Mutation p.E34Q 0.11 tolerated(0.08) benign(0.37) TCGA-G2-A3VY-01 8 68536432 68536432 C T CPA6 Silent p.K57K 0.72 TCGA-G2-A3VY-01 8 69358655 69358656 TG - C8orf34 Frame_Shift_Del p.S191* 0.13 TCGA-G2-A3VY-01 8 70650368 70650368 C A SLCO5A1 Nonsense_Mutation p.E444* 0.62 TCGA-G2-A3VY-01 8 71520314 71520314 C G TRAM1 Missense_Mutation p.E41Q 0.83 tolerated(0.5) benign(0.082) TCGA-G2-A3VY-01 8 71550853 71550853 C G LACTB2 Missense_Mutation p.E251D 0.65 deleterious(0.03) benign(0.027) TCGA-G2-A3VY-01 8 75737667 75737667 C T PI15 Silent p.Y61Y 0.53 TCGA-G2-A3VY-01 8 81888689 81888689 G T PAG1 3'UTR 0.62 TCGA-G2-A3VY-01 8 85441685 85441685 A G RALYL Silent p.S56S 0.44 TCGA-G2-A3VY-01 8 87076268 87076268 G A PSKH2 Silent p.L260L 0.47 TCGA-G2-A3VY-01 8 97274225 97274225 C G PTDSS1 5'UTR 0.44 TCGA-G2-A3VY-01 8 99142401 99142401 G C POP1 Missense_Mutation p.V228L 0.24 tolerated(0.65) benign(0.013) TCGA-G2-A3VY-01 9 103090142 103090142 G T TEX10 Silent p.I576I 0.76 TCGA-G2-A3VY-01 9 107298330 107298330 G C OR13C3 Missense_Mutation p.I255M 0.87 deleterious(0) probably_damaging(0.965) TCGA-G2-A3VY-01 9 107298688 107298688 G A OR13C3 Missense_Mutation p.A136V 0.38 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 9 112963584 112963584 C G C9orf152 Missense_Mutation p.E122Q 0.51 tolerated(0.21) benign(0.103) TCGA-G2-A3VY-01 9 114510461 114510461 C T C9orf84 Missense_Mutation p.G230E 0.35 tolerated(1) benign(0.037) TCGA-G2-A3VY-01 9 131256844 131256844 T A ODF2 Missense_Mutation p.L603Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 9 131341958 131341958 G A SPTAN1 Missense_Mutation p.E422K 0.95 tolerated(0.06) benign(0.096) TCGA-G2-A3VY-01 9 135564487 135564487 G A GTF3C4 3'UTR 0.62 TCGA-G2-A3VY-01 9 137803022 137803022 C G FCN1 Missense_Mutation p.E230D 0.29 tolerated(0.26) benign(0.016) TCGA-G2-A3VY-01 9 138378236 138378236 G A PPP1R26 Missense_Mutation p.R627K 0.09 tolerated(1) benign(0.017) TCGA-G2-A3VY-01 9 139273711 139273711 C G SNAPC4 Missense_Mutation p.K856N 0.72 deleterious(0.04) benign(0.043) TCGA-G2-A3VY-01 9 139405623 139405623 G C NOTCH1 Silent p.V856V 0.19 TCGA-G2-A3VY-01 9 140166654 140166654 C T NELFB Silent p.F489F 0.68 TCGA-G2-A3VY-01 9 140657159 140657159 G C EHMT1 Missense_Mutation p.D512H 0.13 deleterious(0) probably_damaging(0.999) TCGA-G2-A3VY-01 9 15490123 15490123 C A PSIP1 Splice_Site p.X50_splice 0.94 TCGA-G2-A3VY-01 9 19324357 19324357 C G DENND4C Intron 0.59 TCGA-G2-A3VY-01 9 21974736 21974736 G C CDKN2A Missense_Mutation p.L31V 0.45 deleterious(0) probably_damaging(0.983) TCGA-G2-A3VY-01 9 32630951 32630951 C G TAF1L Missense_Mutation p.D1543H 0.14 deleterious(0.01) possibly_damaging(0.844) TCGA-G2-A3VY-01 9 35698825 35698825 C G TLN1 Missense_Mutation p.E2369Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-G2-A3VY-01 9 5908664 5908664 G C MLANA Missense_Mutation p.E105Q 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-G2-A3VY-01 9 72892386 72892386 C T SMC5 Nonsense_Mutation p.Q181* 0.44 TCGA-G2-A3VY-01 9 73150763 73150763 C G TRPM3 3'UTR 0.54 TCGA-G2-A3VY-01 9 74489886 74489886 C T ABHD17B Silent p.L37L 0.08 TCGA-G2-A3VY-01 9 94487117 94487117 G A ROR2 Silent p.F553F 0.89 TCGA-G2-A3VY-01 X 100075396 100075396 C G CSTF2 5'UTR 0.42 TCGA-G2-A3VY-01 X 107084381 107084381 T A MID2 Nonsense_Mutation p.C162* 0.23 TCGA-G2-A3VY-01 X 11197423 11197423 G A ARHGAP6 Silent p.L493L 0.94 TCGA-G2-A3VY-01 X 112033888 112033888 C T AMOT Silent p.Q683Q 0.24 TCGA-G2-A3VY-01 X 118893473 118893473 G C SOWAHD Missense_Mutation p.R281S 0.27 tolerated(0.48) benign(0.01) TCGA-G2-A3VY-01 X 123518337 123518337 T A TENM1 Silent p.G2148G 0.19 TCGA-G2-A3VY-01 X 123680941 123680941 C G TENM1 Splice_Site p.X812_splice 0.93 TCGA-G2-A3VY-01 X 129149535 129149535 G A BCORL1 Silent p.Q929Q 0.27 TCGA-G2-A3VY-01 X 129519381 129519381 A C GPR119 Missense_Mutation p.L14R 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-G2-A3VY-01 X 153995277 153995277 G C DKC1 Missense_Mutation p.E152Q 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-G2-A3VY-01 X 3229461 3229461 C T MXRA5 Silent p.L2261L 0.49 TCGA-G2-A3VY-01 X 41203072 41203072 G A DDX3X Missense_Mutation p.M254I 0.48 tolerated(0.43) benign(0) TCGA-G2-A3VY-01 X 48932868 48932868 G A WDR45 Silent p.F301F 0.29 TCGA-G2-A3VY-01 X 49106025 49106025 A T CCDC22 Missense_Mutation p.H564L 0.48 deleterious(0) probably_damaging(1) TCGA-G2-A3VY-01 X 49773625 49773625 C G CLCN5 Intron 0.88 TCGA-G2-A3VY-01 X 50377284 50377284 G A SHROOM4 Nonsense_Mutation p.Q597* 0.96 TCGA-G2-A3VY-01 X 50377642 50377642 G A SHROOM4 Silent p.T477T 0.93 TCGA-G2-A3VY-01 X 53575134 53575134 G A HUWE1 Missense_Mutation p.S3379F 0.62 possibly_damaging(0.485) TCGA-G2-A3VY-01 X 75649791 75649791 C A MAGEE1 Missense_Mutation p.P490T 0.24 deleterious(0) possibly_damaging(0.566) TCGA-G2-A3VY-01 X 83375020 83375020 T C RPS6KA6 Missense_Mutation p.K221R 0.85 deleterious(0) probably_damaging(0.977) TCGA-G2-AA3B-01 10 103899371 103899371 C G PPRC1 Missense_Mutation p.S369C 0.19 deleterious_low_confidence(0) benign(0.39) TCGA-G2-AA3B-01 10 104591322 104591322 G C CYP17A1 Missense_Mutation p.L396V 0.50 deleterious(0) possibly_damaging(0.873) TCGA-G2-AA3B-01 10 105921780 105921780 C T WDR96 Missense_Mutation p.R1118Q 0.54 deleterious(0.04) possibly_damaging(0.9) TCGA-G2-AA3B-01 10 121689224 121689224 G A SEC23IP Missense_Mutation p.E807K 0.43 tolerated(0.05) possibly_damaging(0.681) TCGA-G2-AA3B-01 10 15151794 15151794 C G NMT2 Missense_Mutation p.K461N 0.31 tolerated(0.07) possibly_damaging(0.733) TCGA-G2-AA3B-01 10 15154822 15154822 C G NMT2 Missense_Mutation p.M437I 0.53 tolerated(0.14) benign(0.358) TCGA-G2-AA3B-01 10 16949640 16949640 C G CUBN Missense_Mutation p.E2524D 0.24 tolerated(0.41) benign(0.232) TCGA-G2-AA3B-01 10 22048465 22048465 C G DNAJC1 Missense_Mutation p.M410I 0.25 tolerated(1) benign(0) TCGA-G2-AA3B-01 10 25241467 25241467 C G PRTFDC1 Missense_Mutation p.R13P 0.62 tolerated(0.14) benign(0.002) TCGA-G2-AA3B-01 10 27031432 27031432 G A PDSS1 Missense_Mutation p.E345K 0.14 deleterious(0) probably_damaging(0.928) TCGA-G2-AA3B-01 10 27425215 27425215 G C YME1L1 Nonsense_Mutation p.S234* 0.10 TCGA-G2-AA3B-01 10 27687295 27687295 G C PTCHD3 Missense_Mutation p.I744M 0.09 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 10 28101375 28101375 C T ARMC4 3'UTR 0.38 TCGA-G2-AA3B-01 10 28101442 28101442 C G ARMC4 Nonstop_Mutation p.*1045Sext*13 0.38 TCGA-G2-AA3B-01 10 31610457 31610457 G A ZEB1 Intron 0.08 TCGA-G2-AA3B-01 10 32582639 32582639 C G EPC1 Missense_Mutation p.D114H 0.13 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 10 37520408 37520408 G C ANKRD30A 3'UTR 0.17 TCGA-G2-AA3B-01 10 415527 415527 T C DIP2C Missense_Mutation p.M680V 0.43 deleterious(0) benign(0.12) TCGA-G2-AA3B-01 10 43662529 43662529 C T CSGALNACT2 Missense_Mutation p.P413S 0.24 tolerated(0.46) benign(0.007) TCGA-G2-AA3B-01 10 51821357 51821357 C G RP11-324H6.5 Splice_Site 0.28 TCGA-G2-AA3B-01 10 6151979 6151979 C G RBM17 Nonsense_Mutation p.S198* 0.44 TCGA-G2-AA3B-01 10 64425908 64425908 C G ZNF365 Missense_Mutation p.Q414E 0.17 tolerated_low_confidence(0.1) benign(0.092) TCGA-G2-AA3B-01 10 70532850 70532850 G C CCAR1 Missense_Mutation p.E882Q 0.21 deleterious(0.05) unknown(0) TCGA-G2-AA3B-01 10 71010045 71010045 G C HKDC1 Splice_Site p.X524_splice 0.43 TCGA-G2-AA3B-01 10 73578394 73578394 C G PSAP Missense_Mutation p.E507Q 0.82 deleterious(0.03) possibly_damaging(0.808) TCGA-G2-AA3B-01 10 75038029 75038029 G A TTC18 Missense_Mutation p.S839L 0.15 tolerated(0.26) benign(0.009) TCGA-G2-AA3B-01 10 75279565 75279565 G A USP54 Nonsense_Mutation p.Q890* 0.17 TCGA-G2-AA3B-01 10 79565545 79565545 G T DLG5 Nonsense_Mutation p.S1681* 0.13 TCGA-G2-AA3B-01 10 82280628 82280628 G C TSPAN14 3'UTR 0.60 TCGA-G2-AA3B-01 10 91177102 91177102 C T IFIT5 Missense_Mutation p.S49F 0.75 tolerated(0.66) probably_damaging(0.951) TCGA-G2-AA3B-01 10 91177617 91177617 C G IFIT5 Missense_Mutation p.L221V 0.78 deleterious(0) possibly_damaging(0.81) TCGA-G2-AA3B-01 10 96076414 96076414 G C PLCE1 Missense_Mutation p.Q2081H 0.19 tolerated(0.15) benign(0.01) TCGA-G2-AA3B-01 10 96447916 96447916 G C CYP2C18 Missense_Mutation p.E122D 0.44 tolerated(0.27) benign(0.01) TCGA-G2-AA3B-01 10 99623982 99623982 C G GOLGA7B Missense_Mutation p.R117G 0.12 deleterious(0) possibly_damaging(0.866) TCGA-G2-AA3B-01 11 102593181 102593181 T G MMP8 Missense_Mutation p.E109A 0.05 tolerated(0.13) benign(0.008) TCGA-G2-AA3B-01 11 102710861 102710861 C T MMP3 Missense_Mutation p.E305K 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-G2-AA3B-01 11 103106477 103106477 C G DYNC2H1 Missense_Mutation p.S3215C 0.15 probably_damaging(0.951) TCGA-G2-AA3B-01 11 108018203 108018203 C T ACAT1 3'UTR 0.07 TCGA-G2-AA3B-01 11 108192065 108192065 G C ATM Missense_Mutation p.E2164Q 0.12 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 11 112104316 112104316 C G PTS 3'UTR 0.39 TCGA-G2-AA3B-01 11 119056582 119056582 C T PDZD3 Intron 0.53 TCGA-G2-AA3B-01 11 120979992 120979992 G A TECTA Missense_Mutation p.D91N 0.12 tolerated(0.12) possibly_damaging(0.783) TCGA-G2-AA3B-01 11 121986263 121986263 C G BLID 3'UTR 0.20 TCGA-G2-AA3B-01 11 124253257 124253257 C T OR8B2 5'UTR 0.34 TCGA-G2-AA3B-01 11 130332664 130332664 A C ADAMTS15 Missense_Mutation p.N511H 0.30 tolerated(0.12) benign(0.001) TCGA-G2-AA3B-01 11 17150938 17150938 G T PIK3C2A Missense_Mutation p.Q770K 0.12 tolerated(0.27) possibly_damaging(0.84) TCGA-G2-AA3B-01 11 19259625 19259625 C G E2F8 Missense_Mutation p.E24Q 0.18 tolerated(1) benign(0.019) TCGA-G2-AA3B-01 11 32704976 32704976 C G CCDC73 Intron 0.33 TCGA-G2-AA3B-01 11 32739656 32739656 A G CCDC73 Missense_Mutation p.I58T 0.53 deleterious(0.01) probably_damaging(0.987) TCGA-G2-AA3B-01 11 3720358 3720358 G C NUP98 Silent p.L1321L 0.16 TCGA-G2-AA3B-01 11 46568832 46568832 G C AMBRA1 Missense_Mutation p.S70C 0.75 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G2-AA3B-01 11 47602247 47602247 G A NDUFS3 Intron 0.73 TCGA-G2-AA3B-01 11 47602553 47602553 G C NDUFS3 Intron 0.80 TCGA-G2-AA3B-01 11 5537102 5537102 G A UBQLNL Silent p.F190F 0.06 TCGA-G2-AA3B-01 11 57003813 57003813 G C APLNR Missense_Mutation p.F222L 0.24 tolerated(0.2) possibly_damaging(0.593) TCGA-G2-AA3B-01 11 57472631 57472631 G A MED19 Silent p.F96F 0.32 TCGA-G2-AA3B-01 11 57982331 57982331 C G OR1S1 Missense_Mutation p.L39V 0.09 tolerated(0.2) benign(0.018) TCGA-G2-AA3B-01 11 58892342 58892342 G T FAM111B Nonsense_Mutation p.E258* 0.29 TCGA-G2-AA3B-01 11 58979693 58979693 T A MPEG1 Missense_Mutation p.I216F 0.16 deleterious(0) possibly_damaging(0.736) TCGA-G2-AA3B-01 11 59282631 59282631 G C OR4D9 Silent p.L82L 0.30 TCGA-G2-AA3B-01 11 61183840 61183840 C T CPSF7 Silent p.L277L 0.64 TCGA-G2-AA3B-01 11 63449203 63449203 G C RTN3 Missense_Mutation p.G32A 0.10 tolerated_low_confidence(0.1) unknown(0) TCGA-G2-AA3B-01 11 63487292 63487292 A G RTN3 Missense_Mutation p.M440V 0.26 tolerated(1) benign(0) TCGA-G2-AA3B-01 11 64695600 64695600 G C PPP2R5B Missense_Mutation p.K187N 0.17 deleterious(0) possibly_damaging(0.564) TCGA-G2-AA3B-01 11 65003944 65003944 C T SLC22A20 RNA 0.36 TCGA-G2-AA3B-01 11 66359040 66359040 T C CCDC87 Missense_Mutation p.I483V 0.36 tolerated(0.68) benign(0.001) TCGA-G2-AA3B-01 11 66476457 66476457 G C SPTBN2 Silent p.L369L 0.09 TCGA-G2-AA3B-01 11 67200265 67200265 C G RPS6KB2 Missense_Mutation p.I191M 0.07 deleterious(0) probably_damaging(0.99) TCGA-G2-AA3B-01 11 67925321 67925321 G C SUV420H1 Missense_Mutation p.S831C 0.21 deleterious(0) probably_damaging(0.954) TCGA-G2-AA3B-01 11 68748293 68748293 G A MRGPRD Nonsense_Mutation p.R55* 0.18 TCGA-G2-AA3B-01 11 6942319 6942319 C G OR2D3 Missense_Mutation p.I29M 0.24 deleterious(0) possibly_damaging(0.634) TCGA-G2-AA3B-01 11 70218446 70218446 G C PPFIA1 Missense_Mutation p.L997F 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-G2-AA3B-01 11 7067996 7067996 G C NLRP14 Missense_Mutation p.D686H 0.17 deleterious(0.02) possibly_damaging(0.875) TCGA-G2-AA3B-01 11 73996862 73996862 C T P4HA3 Missense_Mutation p.E368K 0.08 tolerated(0.82) benign(0.011) TCGA-G2-AA3B-01 11 74168589 74168589 G A KCNE3 Missense_Mutation p.T7M 0.14 tolerated_low_confidence(0.11) possibly_damaging(0.664) TCGA-G2-AA3B-01 11 75298105 75298105 C G MAP6 Nonstop_Mutation p.*814Sext*22 0.23 TCGA-G2-AA3B-01 11 75298877 75298877 C G MAP6 Missense_Mutation p.E557Q 0.33 tolerated_low_confidence(0.32) possibly_damaging(0.516) TCGA-G2-AA3B-01 11 75298898 75298898 C T MAP6 Missense_Mutation p.D550N 0.34 deleterious_low_confidence(0.03) probably_damaging(0.915) TCGA-G2-AA3B-01 11 77047295 77047295 C G PAK1 Missense_Mutation p.E417Q 0.48 tolerated(0.12) probably_damaging(0.993) TCGA-G2-AA3B-01 11 77301163 77301163 G T AQP11 Silent p.P42P 0.43 TCGA-G2-AA3B-01 11 92570844 92570844 C T FAT3 Silent p.L3414L 0.13 TCGA-G2-AA3B-01 11 92616348 92616348 G A FAT3 Silent p.Q4242Q 0.05 TCGA-G2-AA3B-01 11 95552066 95552066 G C CEP57 Missense_Mutation p.E233Q 0.53 tolerated(0.89) benign(0.061) TCGA-G2-AA3B-01 12 10282615 10282615 G C CLEC7A Missense_Mutation p.Q23E 0.11 deleterious(0.01) benign(0.009) TCGA-G2-AA3B-01 12 104156178 104156178 G C STAB2 Missense_Mutation p.E2496Q 0.50 tolerated(0.13) benign(0.344) TCGA-G2-AA3B-01 12 10587972 10587972 G C KLRC2 Silent p.V75V 0.28 TCGA-G2-AA3B-01 12 108589558 108589558 C G WSCD2 5'UTR 0.46 TCGA-G2-AA3B-01 12 109898575 109898575 C A KCTD10 Missense_Mutation p.G85C 0.31 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3B-01 12 10999868 10999868 C T PRR4 Missense_Mutation p.D67N 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.728) TCGA-G2-AA3B-01 12 11546852 11546852 G A PRB2 Missense_Mutation p.P54S 0.13 tolerated_low_confidence(0.15) unknown(0) TCGA-G2-AA3B-01 12 120263063 120263063 G A CIT Missense_Mutation p.S288L 0.32 deleterious(0) probably_damaging(0.933) TCGA-G2-AA3B-01 12 120527845 120527845 G T CCDC64 Silent p.L510L 0.41 TCGA-G2-AA3B-01 12 121789986 121789986 C T ANAPC5 Missense_Mutation p.S53N 0.58 tolerated(0.45) benign(0.075) TCGA-G2-AA3B-01 12 122716681 122716681 G C VPS33A 3'UTR 0.28 TCGA-G2-AA3B-01 12 122763391 122763391 C G CLIP1 Missense_Mutation p.K1288N 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-G2-AA3B-01 12 123187066 123187066 G A HCAR2 Silent p.F255F 0.16 TCGA-G2-AA3B-01 12 123187658 123187658 G C HCAR2 Missense_Mutation p.S58C 0.35 deleterious(0.01) possibly_damaging(0.897) TCGA-G2-AA3B-01 12 124256154 124256154 G C DNAH10 Missense_Mutation p.R41P 0.25 benign(0) TCGA-G2-AA3B-01 12 125397126 125397126 C G UBC Missense_Mutation p.E398Q 0.42 tolerated(0.08) probably_damaging(0.932) TCGA-G2-AA3B-01 12 130847598 130847598 G A PIWIL1 Missense_Mutation p.D702N 0.22 deleterious(0.05) probably_damaging(0.99) TCGA-G2-AA3B-01 12 1599256 1599256 C G ERC1 Intron 0.70 TCGA-G2-AA3B-01 12 19418758 19418758 C T PLEKHA5 Missense_Mutation p.H229Y 0.06 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3B-01 12 2074824 2074824 C T DCP1B Missense_Mutation p.G141E 0.55 tolerated(0.06) benign(0.062) TCGA-G2-AA3B-01 12 21353503 21353503 G A SLCO1B1 Silent p.L344L 0.11 TCGA-G2-AA3B-01 12 21598305 21598305 G C PYROXD1 Missense_Mutation p.D64H 0.12 deleterious(0) probably_damaging(0.911) TCGA-G2-AA3B-01 12 21711248 21711248 C T GYS2 Splice_Site p.X437_splice 0.35 TCGA-G2-AA3B-01 12 27077362 27077362 C T ASUN Missense_Mutation p.A244T 0.05 tolerated(0.27) benign(0.371) TCGA-G2-AA3B-01 12 29523100 29523100 T C ERGIC2 Silent p.V54V 0.54 TCGA-G2-AA3B-01 12 31236798 31236798 G C DDX11 Missense_Mutation p.E66Q 0.53 deleterious(0.04) probably_damaging(0.997) TCGA-G2-AA3B-01 12 44782333 44782333 G A TMEM117 Missense_Mutation p.E475K 0.06 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-G2-AA3B-01 12 49444172 49444172 C T KMT2D Missense_Mutation p.E1067K 0.39 possibly_damaging(0.525) TCGA-G2-AA3B-01 12 49666207 49666207 G T TUBA1C Nonsense_Mutation p.E183* 0.38 TCGA-G2-AA3B-01 12 49953243 49953243 G A MCRS1 Missense_Mutation p.S373L 0.42 deleterious(0.01) possibly_damaging(0.835) TCGA-G2-AA3B-01 12 49996992 49996992 C T FAM186B Missense_Mutation p.E161K 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-G2-AA3B-01 12 56221305 56221305 G C DNAJC14 Missense_Mutation p.L380V 0.12 tolerated(0.21) benign(0.001) TCGA-G2-AA3B-01 12 56233492 56233492 A T MMP19 Missense_Mutation p.L185Q 0.30 tolerated(0.38) possibly_damaging(0.845) TCGA-G2-AA3B-01 12 56495022 56495022 C T ERBB3 Missense_Mutation p.R1127C 0.27 deleterious(0.01) benign(0.006) TCGA-G2-AA3B-01 12 56526287 56526287 C G ESYT1 Nonsense_Mutation p.S356* 0.07 TCGA-G2-AA3B-01 12 57108465 57108465 C T NACA Missense_Mutation p.G736E 0.35 deleterious_low_confidence(0) benign(0.372) TCGA-G2-AA3B-01 12 64815196 64815196 A G XPOT Missense_Mutation p.D342G 0.37 deleterious(0.01) benign(0.319) TCGA-G2-AA3B-01 12 65633916 65633916 A G LEMD3 Missense_Mutation p.D675G 0.36 deleterious(0.01) benign(0.089) TCGA-G2-AA3B-01 12 6886542 6886542 G C LAG3 Missense_Mutation p.Q390H 0.38 tolerated(0.2) benign(0.187) TCGA-G2-AA3B-01 12 71139646 71139646 G C PTPRR Missense_Mutation p.S320C 0.26 deleterious(0) benign(0.012) TCGA-G2-AA3B-01 12 7177540 7177540 C A C1S Missense_Mutation p.P551Q 0.11 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 12 81101796 81101796 C A MYF6 Missense_Mutation p.L100M 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-G2-AA3B-01 12 83444700 83444700 G C TMTC2 Missense_Mutation p.E724Q 0.16 tolerated(0.73) benign(0.002) TCGA-G2-AA3B-01 13 111367740 111367740 C T ING1 5'UTR 0.32 TCGA-G2-AA3B-01 13 111368180 111368180 C T ING1 Silent p.L130L 0.33 TCGA-G2-AA3B-01 13 111368195 111368195 C T ING1 Silent p.F135F 0.45 TCGA-G2-AA3B-01 13 111953139 111953139 G C ARHGEF7 Missense_Mutation p.E570Q 0.11 deleterious(0) possibly_damaging(0.839) TCGA-G2-AA3B-01 13 113052380 113052380 G C SPACA7 Missense_Mutation p.E57Q 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-G2-AA3B-01 13 24444280 24444280 G C MIPEP Missense_Mutation p.L220V 0.08 tolerated(0.12) benign(0.003) TCGA-G2-AA3B-01 13 24444281 24444281 A T MIPEP Missense_Mutation p.F219L 0.07 deleterious(0) probably_damaging(0.977) TCGA-G2-AA3B-01 13 28624349 28624349 C T FLT3 Missense_Mutation p.E209K 0.10 tolerated(0.26) benign(0.254) TCGA-G2-AA3B-01 13 31232961 31232961 G A USPL1 Missense_Mutation p.R916Q 0.23 tolerated(0.14) benign(0.002) TCGA-G2-AA3B-01 13 32911757 32911757 C G BRCA2 Missense_Mutation p.Q1089E 0.24 tolerated(0.31) benign(0.138) TCGA-G2-AA3B-01 13 33635733 33635733 C G KL Silent p.L839L 0.28 TCGA-G2-AA3B-01 13 35926351 35926351 C G NBEA Missense_Mutation p.L2024V 0.30 deleterious(0) probably_damaging(0.986) TCGA-G2-AA3B-01 13 36903569 36903569 G C SPG20 Missense_Mutation p.S365C 0.25 tolerated(0.08) benign(0.011) TCGA-G2-AA3B-01 13 38237614 38237614 C T TRPC4 Missense_Mutation p.E543K 0.09 tolerated(0.26) benign(0.062) TCGA-G2-AA3B-01 13 50050713 50050713 C G SETDB2 Missense_Mutation p.S148C 0.03 tolerated(0.07) benign(0.1) TCGA-G2-AA3B-01 13 52548779 52548779 G C ATP7B Missense_Mutation p.Q193E 0.09 tolerated(0.9) possibly_damaging(0.491) TCGA-G2-AA3B-01 13 70456576 70456576 C A KLHL1 Nonsense_Mutation p.E356* 0.13 TCGA-G2-AA3B-01 13 77754343 77754343 G C MYCBP2 Missense_Mutation p.F1646L 0.10 possibly_damaging(0.787) TCGA-G2-AA3B-01 13 77807378 77807378 G A MYCBP2 Missense_Mutation p.P846S 0.46 probably_damaging(0.986) TCGA-G2-AA3B-01 13 88329490 88329490 C G SLITRK5 Nonsense_Mutation p.S616* 0.03 TCGA-G2-AA3B-01 13 96293693 96293693 C G DZIP1 Silent p.L151L 0.14 TCGA-G2-AA3B-01 13 96665687 96665690 TTTG - UGGT2 Frame_Shift_Del p.N177Kfs*7 0.17 TCGA-G2-AA3B-01 14 100835428 100835428 G C WARS Nonsense_Mutation p.S32* 0.12 TCGA-G2-AA3B-01 14 103932400 103932401 - AAATCC MARK3 In_Frame_Ins p.N291_P292dup 0.12 TCGA-G2-AA3B-01 14 21861391 21861391 G C CHD8 Silent p.L2114L 0.22 TCGA-G2-AA3B-01 14 22294226 22294226 C G TRAV10 Missense_Mutation p.I110M 0.72 tolerated(0.13) possibly_damaging(0.831) TCGA-G2-AA3B-01 14 23794476 23794476 C T BCL2L2-PABPN1 Missense_Mutation p.S328L 0.34 tolerated_low_confidence(0.24) probably_damaging(0.943) TCGA-G2-AA3B-01 14 24710891 24710891 G A TINF2 Missense_Mutation p.S130L 0.38 tolerated(0.66) benign(0.004) TCGA-G2-AA3B-01 14 31614051 31614051 G C HECTD1 Missense_Mutation p.Q865E 0.18 tolerated(0.09) benign(0.068) TCGA-G2-AA3B-01 14 33290991 33290991 C T AKAP6 Silent p.L1324L 0.16 TCGA-G2-AA3B-01 14 33292295 33292295 C G AKAP6 Missense_Mutation p.S1759C 0.32 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 14 38060530 38060530 C A FOXA1 3'UTR 0.47 TCGA-G2-AA3B-01 14 39818134 39818134 A G CTAGE5 Missense_Mutation p.Y739C 0.19 tolerated(0.16) benign(0.114) TCGA-G2-AA3B-01 14 45372492 45372492 G C C14orf28 Missense_Mutation p.E203Q 0.23 tolerated_low_confidence(0.11) benign(0.001) TCGA-G2-AA3B-01 14 50267156 50267156 G A NEMF Missense_Mutation p.S785F 0.50 deleterious(0) probably_damaging(0.993) TCGA-G2-AA3B-01 14 51401870 51401870 C T PYGL Missense_Mutation p.E127K 0.21 deleterious(0.02) probably_damaging(0.963) TCGA-G2-AA3B-01 14 53175509 53175509 G C PSMC6 Missense_Mutation p.R92T 0.16 deleterious(0.03) probably_damaging(0.948) TCGA-G2-AA3B-01 14 55462425 55462425 G C WDHD1 Nonsense_Mutation p.S350* 0.60 TCGA-G2-AA3B-01 14 58831502 58831502 A T ARID4A Missense_Mutation p.N899Y 0.21 deleterious_low_confidence(0.03) benign(0.197) TCGA-G2-AA3B-01 14 61442637 61442637 T G TRMT5 Missense_Mutation p.K334Q 0.45 tolerated(0.12) benign(0.403) TCGA-G2-AA3B-01 14 61446386 61446386 G A TRMT5 Missense_Mutation p.S77F 0.40 deleterious(0) possibly_damaging(0.497) TCGA-G2-AA3B-01 14 70714127 70714127 G C ADAM21P1 RNA 0.30 TCGA-G2-AA3B-01 14 70924467 70924467 C G ADAM21 Missense_Mutation p.S84C 0.10 deleterious(0) probably_damaging(0.989) TCGA-G2-AA3B-01 14 88983466 88983466 G T PTPN21 Nonsense_Mutation p.S107* 0.31 TCGA-G2-AA3B-01 14 93125711 93125711 G C RIN3 Missense_Mutation p.Q744H 0.45 tolerated(0.5) benign(0.241) TCGA-G2-AA3B-01 14 94517753 94517753 C T DDX24 Silent p.L788L 0.10 TCGA-G2-AA3B-01 15 20644066 20644066 C G HERC2P3 RNA 0.38 TCGA-G2-AA3B-01 15 28234813 28234813 C G OCA2 Splice_Site p.X373_splice 0.23 TCGA-G2-AA3B-01 15 28491137 28491154 CCAGCCTCTTGCATGAGA - HERC2 In_Frame_Del p.L1151_G1156del 0.21 TCGA-G2-AA3B-01 15 33927951 33927951 G A RYR3 Silent p.A1104A 0.22 TCGA-G2-AA3B-01 15 40939190 40939190 G C CASC5 Missense_Mutation p.E2030D 0.17 deleterious(0.01) possibly_damaging(0.886) TCGA-G2-AA3B-01 15 44166359 44166359 C T FRMD5 Silent p.L479L 0.15 TCGA-G2-AA3B-01 15 44581417 44581417 G A CASC4 Missense_Mutation p.E64K 0.20 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 15 44816458 44816458 A G CTDSPL2 3'UTR 0.76 TCGA-G2-AA3B-01 15 49031133 49031133 G A CEP152 Silent p.L1482L 0.18 TCGA-G2-AA3B-01 15 54306845 54306845 C T UNC13C Missense_Mutation p.S582L 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-G2-AA3B-01 15 63125804 63125804 G C TLN2 Missense_Mutation p.Q2368H 0.29 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 15 64067105 64067105 C G HERC1 Missense_Mutation p.D240H 0.35 probably_damaging(0.995) TCGA-G2-AA3B-01 15 64706408 64706408 C A TRIP4 Missense_Mutation p.Q390K 0.05 tolerated(1) benign(0.001) TCGA-G2-AA3B-01 15 66821897 66821897 G C ZWILCH Missense_Mutation p.D381H 0.60 deleterious(0) possibly_damaging(0.895) TCGA-G2-AA3B-01 15 73558736 73558736 G C NEO1 Silent p.V826V 0.10 TCGA-G2-AA3B-01 15 74490116 74490116 G A STRA6 Missense_Mutation p.H92Y 0.27 deleterious(0) probably_damaging(0.973) TCGA-G2-AA3B-01 15 76696995 76696995 C G SCAPER Missense_Mutation p.D1113H 0.36 deleterious(0.03) benign(0.036) TCGA-G2-AA3B-01 15 77473981 77473981 C G PEAK1 Missense_Mutation p.E96D 0.20 tolerated(0.07) benign(0.008) TCGA-G2-AA3B-01 15 77908000 77908000 G C LINGO1 Missense_Mutation p.I83M 0.43 deleterious(0.01) probably_damaging(0.919) TCGA-G2-AA3B-01 15 79750577 79750577 C T KIAA1024 Silent p.V696V 0.37 TCGA-G2-AA3B-01 15 84561433 84561433 G A ADAMTSL3 Intron 0.69 TCGA-G2-AA3B-01 15 86265459 86265461 AGA - AKAP13 Splice_Site p.X2132_splice 0.18 TCGA-G2-AA3B-01 15 88690604 88690604 G C NTRK3 Silent p.L142L 0.38 TCGA-G2-AA3B-01 15 89837117 89837117 C T FANCI Missense_Mutation p.S782F 0.09 tolerated(0.13) benign(0.433) TCGA-G2-AA3B-01 16 14962407 14962407 A G NOMO1 Silent p.E603E 0.41 TCGA-G2-AA3B-01 16 15711214 15711214 C G KIAA0430 Missense_Mutation p.E967Q 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-G2-AA3B-01 16 16244626 16244626 C T ABCC6 Silent p.V1404V 0.27 TCGA-G2-AA3B-01 16 1748849 1748849 G C HN1L Missense_Mutation p.E141D 0.44 tolerated(0.08) benign(0.082) TCGA-G2-AA3B-01 16 20803346 20803346 C T ACSM3 Missense_Mutation p.S450L 0.34 tolerated(0.11) possibly_damaging(0.639) TCGA-G2-AA3B-01 16 21110072 21110072 C T DNAH3 Silent p.L795L 0.13 TCGA-G2-AA3B-01 16 2115600 2115600 G A TSC2 Silent p.V560V 0.08 TCGA-G2-AA3B-01 16 23091486 23091486 C G USP31 Missense_Mutation p.D653H 0.10 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 16 2331115 2331115 C A ABCA3 Silent p.T1424T 0.13 TCGA-G2-AA3B-01 16 23652811 23652811 A G DCTN5 5'UTR 0.35 TCGA-G2-AA3B-01 16 23716428 23716428 G A ERN2 Silent p.L258L 0.19 TCGA-G2-AA3B-01 16 2812457 2812457 G C SRRM2 Missense_Mutation p.R643T 0.16 unknown(0) TCGA-G2-AA3B-01 16 2815128 2815128 G C SRRM2 Silent p.L1533L 0.47 TCGA-G2-AA3B-01 16 29819072 29819072 G A MAZ Missense_Mutation p.M322I 0.10 deleterious(0) benign(0.094) TCGA-G2-AA3B-01 16 3063799 3063799 G C CLDN9 Missense_Mutation p.D146H 0.08 deleterious(0) probably_damaging(0.984) TCGA-G2-AA3B-01 16 30677859 30677859 G A FBRS Silent p.L600L 0.05 TCGA-G2-AA3B-01 16 30734044 30734044 C T SRCAP Silent p.L1289L 0.29 TCGA-G2-AA3B-01 16 4027575 4027575 G A ADCY9 Silent p.F912F 0.42 TCGA-G2-AA3B-01 16 53190890 53190890 C T CHD9 Missense_Mutation p.H297Y 0.10 possibly_damaging(0.669) TCGA-G2-AA3B-01 16 55519234 55519234 G A MMP2 Missense_Mutation p.D185N 0.15 deleterious(0.01) probably_damaging(0.927) TCGA-G2-AA3B-01 16 65005962 65005962 G C CDH11 Missense_Mutation p.R466G 0.23 deleterious(0.03) benign(0.107) TCGA-G2-AA3B-01 16 66945867 66945867 G A CDH16 Silent p.I575I 0.36 TCGA-G2-AA3B-01 16 67236334 67236334 C G ELMO3 Missense_Mutation p.F485L 0.33 tolerated(0.07) possibly_damaging(0.822) TCGA-G2-AA3B-01 16 67325713 67325713 G A KCTD19 Missense_Mutation p.P749L 0.21 tolerated_low_confidence(0.32) benign(0) TCGA-G2-AA3B-01 16 67404973 67404973 G T LRRC36 Missense_Mutation p.G441V 0.32 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-G2-AA3B-01 16 67961249 67961249 C T PSKH1 Silent p.L327L 0.05 TCGA-G2-AA3B-01 16 67964658 67964658 C T CTRL Missense_Mutation p.E97K 0.07 tolerated(0.07) probably_damaging(0.958) TCGA-G2-AA3B-01 16 67970132 67970132 G A PSMB10 Silent p.I76I 0.34 TCGA-G2-AA3B-01 16 68592414 68592414 G C ZFP90 Missense_Mutation p.E67Q 0.46 deleterious(0.03) possibly_damaging(0.548) TCGA-G2-AA3B-01 16 69148449 69148449 C T HAS3 Silent p.F314F 0.15 TCGA-G2-AA3B-01 16 69703905 69703905 C G NFAT5 Missense_Mutation p.I465M 0.17 probably_damaging(0.998) TCGA-G2-AA3B-01 16 70562804 70562804 C A SF3B3 Silent p.S33S 0.38 TCGA-G2-AA3B-01 16 70590867 70590867 G C SF3B3 Missense_Mutation p.E649Q 0.19 tolerated(0.33) benign(0.288) TCGA-G2-AA3B-01 16 70594423 70594423 G C SF3B3 Missense_Mutation p.D688H 0.48 deleterious(0) probably_damaging(0.992) TCGA-G2-AA3B-01 16 77229455 77229455 G A MON1B Missense_Mutation p.S440N 0.25 tolerated(0.33) benign(0.014) TCGA-G2-AA3B-01 16 779179 779179 C G HAGHL Intron 0.31 TCGA-G2-AA3B-01 16 78148904 78148904 C T WWOX Missense_Mutation p.P88S 0.21 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 16 81134836 81134836 G C GCSH 5'Flank 0.29 TCGA-G2-AA3B-01 16 84256054 84256054 G A KCNG4 Silent p.I443I 0.07 TCGA-G2-AA3B-01 16 845804 845804 C G CHTF18 Silent p.L765L 0.25 TCGA-G2-AA3B-01 16 84872045 84872045 C T CRISPLD2 5'UTR 0.10 TCGA-G2-AA3B-01 16 85009881 85009881 G C ZDHHC7 3'UTR 0.31 TCGA-G2-AA3B-01 16 87874726 87874726 C T SLC7A5 Missense_Mutation p.E234K 0.39 tolerated(0.21) benign(0.012) TCGA-G2-AA3B-01 16 89294941 89294941 C G ZNF778 Missense_Mutation p.Q721E 0.15 deleterious(0.01) benign(0.126) TCGA-G2-AA3B-01 16 89828369 89828369 G A FANCA Missense_Mutation p.S947L 0.10 deleterious(0) benign(0.307) TCGA-G2-AA3B-01 16 89922527 89922527 G C SPIRE2 Missense_Mutation p.E329Q 0.44 tolerated(0.12) benign(0.251) TCGA-G2-AA3B-01 17 10231184 10231184 G A MYH13 Missense_Mutation p.S897F 0.43 deleterious(0) benign(0.355) TCGA-G2-AA3B-01 17 15974811 15974811 G A NCOR1 Missense_Mutation p.P1355L 0.40 probably_damaging(0.999) TCGA-G2-AA3B-01 17 16004574 16004574 C G NCOR1 Missense_Mutation p.E894Q 0.07 benign(0.445) TCGA-G2-AA3B-01 17 16004835 16004835 C G NCOR1 Missense_Mutation p.E807Q 0.44 benign(0.024) TCGA-G2-AA3B-01 17 1617217 1617217 C T TLCD2 5'Flank 0.10 TCGA-G2-AA3B-01 17 26862157 26862157 G C FOXN1 Missense_Mutation p.G523A 0.13 tolerated(0.24) possibly_damaging(0.523) TCGA-G2-AA3B-01 17 26958872 26958872 G T KIAA0100 Silent p.V1354V 0.41 TCGA-G2-AA3B-01 17 27076062 27076062 G C TRAF4 Missense_Mutation p.E294Q 0.08 tolerated(0.37) benign(0.01) TCGA-G2-AA3B-01 17 27401833 27401833 C T MYO18A Silent p.L2040L 0.40 TCGA-G2-AA3B-01 17 27613768 27613768 G C NUFIP2 Missense_Mutation p.S415C 0.08 deleterious(0) probably_damaging(0.958) TCGA-G2-AA3B-01 17 28652039 28652039 C T TMIGD1 Silent p.V145V 0.11 TCGA-G2-AA3B-01 17 30192428 30192428 T C UTP6 Silent p.E531E 0.43 TCGA-G2-AA3B-01 17 30226692 30226692 G C UTP6 Missense_Mutation p.F50L 0.07 tolerated(0.42) benign(0.002) TCGA-G2-AA3B-01 17 30267339 30267339 G C SUZ12 Silent p.R103R 0.09 TCGA-G2-AA3B-01 17 30315353 30315353 C T SUZ12 Silent p.F346F 0.11 TCGA-G2-AA3B-01 17 30815426 30815426 C G CDK5R1 Missense_Mutation p.S263C 0.12 tolerated(0.06) benign(0.006) TCGA-G2-AA3B-01 17 33968979 33968979 G C AP2B1 Missense_Mutation p.L507F 0.15 deleterious(0) possibly_damaging(0.67) TCGA-G2-AA3B-01 17 3533520 3533520 C T SHPK Missense_Mutation p.V97M 0.12 tolerated(0.68) benign(0.061) TCGA-G2-AA3B-01 17 35990093 35990093 C G DDX52 Silent p.L238L 0.29 TCGA-G2-AA3B-01 17 38420907 38420907 C G WIPF2 Missense_Mutation p.S160C 0.35 deleterious(0) probably_damaging(0.943) TCGA-G2-AA3B-01 17 39036898 39036898 C T KRT20 Missense_Mutation p.D200N 0.33 deleterious(0) benign(0.133) TCGA-G2-AA3B-01 17 39726263 39726263 C G KRT9 Missense_Mutation p.E244Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-G2-AA3B-01 17 41168327 41168327 C T VAT1 Silent p.E365E 0.08 TCGA-G2-AA3B-01 17 41242998 41242998 G C BRCA1 Nonsense_Mutation p.S1383* 0.28 TCGA-G2-AA3B-01 17 45056119 45056119 G A RPRML Silent p.F85F 0.87 TCGA-G2-AA3B-01 17 47874111 47874111 G C KAT7 Splice_Site p.X55_splice 0.74 TCGA-G2-AA3B-01 17 4836699 4836699 C T GP1BA Missense_Mutation p.S267L 0.13 tolerated(1) possibly_damaging(0.478) TCGA-G2-AA3B-01 17 57298051 57298051 G A GDPD1 Silent p.P27P 0.05 TCGA-G2-AA3B-01 17 58003876 58003876 C T RPS6KB1 Silent p.F154F 0.06 TCGA-G2-AA3B-01 17 58013871 58013871 G A RPS6KB1 Missense_Mutation p.R363Q 0.05 deleterious(0.02) benign(0.009) TCGA-G2-AA3B-01 17 59479063 59479063 C T TBX2 Silent p.F138F 0.07 TCGA-G2-AA3B-01 17 59760886 59760886 C G BRIP1 Missense_Mutation p.R1174T 0.07 tolerated_low_confidence(0.52) benign(0.076) TCGA-G2-AA3B-01 17 60501622 60501622 G A METTL2A Silent p.E51E 0.14 TCGA-G2-AA3B-01 17 60765945 60765945 G A MRC2 Missense_Mutation p.E1049K 0.17 tolerated(0.29) benign(0.023) TCGA-G2-AA3B-01 17 61417549 61417549 C T TANC2 Missense_Mutation p.R481C 0.33 deleterious(0) possibly_damaging(0.836) TCGA-G2-AA3B-01 17 61497894 61497894 C T TANC2 Silent p.S1517S 0.09 TCGA-G2-AA3B-01 17 61766936 61766936 C T MAP3K3 Nonsense_Mutation p.Q333* 0.24 TCGA-G2-AA3B-01 17 61908762 61908762 G T PSMC5 Nonsense_Mutation p.E316* 0.13 TCGA-G2-AA3B-01 17 62547765 62547765 C G SMURF2 Missense_Mutation p.Q602H 0.38 tolerated(0.24) probably_damaging(0.979) TCGA-G2-AA3B-01 17 65050180 65050180 C G CACNG1 Missense_Mutation p.Q100E 0.48 tolerated(0.14) possibly_damaging(0.493) TCGA-G2-AA3B-01 17 6531882 6531882 G T KIAA0753 Silent p.V91V 0.36 TCGA-G2-AA3B-01 17 66872842 66872842 A C ABCA8 Nonsense_Mutation p.L1361* 0.20 TCGA-G2-AA3B-01 17 67250581 67250581 C T ABCA5 Silent p.L1373L 0.78 TCGA-G2-AA3B-01 17 74056446 74056446 G A SRP68 Silent p.L260L 0.09 TCGA-G2-AA3B-01 17 7406503 7406503 G C POLR2A Missense_Mutation p.K940N 0.85 benign(0.292) TCGA-G2-AA3B-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.81 TCGA-G2-AA3B-01 17 77921545 77921545 C T TBC1D16 Missense_Mutation p.E543K 0.15 deleterious(0) probably_damaging(0.95) TCGA-G2-AA3B-01 17 78346910 78346910 C G RNF213 Missense_Mutation p.S4296C 0.76 benign(0.006) TCGA-G2-AA3B-01 17 8358153 8358153 C T NDEL1 Missense_Mutation p.S247F 0.78 deleterious(0) possibly_damaging(0.902) TCGA-G2-AA3B-01 18 12802116 12802116 G C PTPN2 Missense_Mutation p.S298C 0.15 tolerated(0.14) benign(0) TCGA-G2-AA3B-01 18 19203799 19203799 G C SNRPD1 Missense_Mutation p.R61P 0.30 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 18 21508201 21508201 G A LAMA3 Nonsense_Mutation p.W2764* 0.15 TCGA-G2-AA3B-01 18 24496385 24496385 C - CHST9 Frame_Shift_Del p.K391Nfs*20 0.38 TCGA-G2-AA3B-01 18 25543404 25543404 C T CDH2 Missense_Mutation p.E811K 0.28 tolerated(0.1) probably_damaging(0.97) TCGA-G2-AA3B-01 18 2567193 2567193 G A METTL4 Missense_Mutation p.S8L 0.13 deleterious(0.03) benign(0.02) TCGA-G2-AA3B-01 18 28989425 28989425 C G DSG4 Silent p.L648L 0.07 TCGA-G2-AA3B-01 18 346709 346709 G A COLEC12 Nonsense_Mutation p.Q305* 0.08 TCGA-G2-AA3B-01 18 43535088 43535088 C T EPG5 Missense_Mutation p.E94K 0.14 tolerated_low_confidence(0.1) benign(0) TCGA-G2-AA3B-01 18 47810410 47810410 C T CXXC1 Missense_Mutation p.E427K 0.15 deleterious(0) probably_damaging(0.981) TCGA-G2-AA3B-01 18 50734160 50734160 G A DCC Missense_Mutation p.D612N 0.07 deleterious(0) benign(0.375) TCGA-G2-AA3B-01 18 51731509 51731509 G A MBD2 Silent p.F187F 0.10 TCGA-G2-AA3B-01 18 5419899 5419899 C T EPB41L3 Intron 0.76 TCGA-G2-AA3B-01 18 55398940 55398940 C G ATP8B1 Missense_Mutation p.D34H 0.79 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-G2-AA3B-01 18 56278983 56278983 G C ALPK2 Missense_Mutation p.S16C 0.23 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 18 6263973 6263973 G C L3MBTL4 Silent p.V64V 0.18 TCGA-G2-AA3B-01 18 9255858 9255858 G C ANKRD12 Missense_Mutation p.D865H 0.15 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-G2-AA3B-01 19 10599872 10599872 G A KEAP1 Silent p.V568V 0.12 TCGA-G2-AA3B-01 19 10657529 10657529 G A ATG4D Missense_Mutation p.E170K 0.19 tolerated(0.08) benign(0.006) TCGA-G2-AA3B-01 19 10668503 10668503 C T KRI1 Silent p.K482K 0.29 TCGA-G2-AA3B-01 19 11348134 11348134 C T DOCK6 Missense_Mutation p.D691N 0.24 tolerated(0.21) probably_damaging(0.969) TCGA-G2-AA3B-01 19 11660696 11660696 C G CNN1 3'UTR 0.15 TCGA-G2-AA3B-01 19 11832550 11832550 C G ZNF823 Missense_Mutation p.R600T 0.06 tolerated(0.64) possibly_damaging(0.724) TCGA-G2-AA3B-01 19 12985129 12985129 C T MAST1 Silent p.V1386V 0.24 TCGA-G2-AA3B-01 19 13246324 13246324 G A NACC1 Missense_Mutation p.M101I 0.06 deleterious(0.04) benign(0.007) TCGA-G2-AA3B-01 19 14910580 14910580 G A OR7C1 Silent p.F123F 0.11 TCGA-G2-AA3B-01 19 14991433 14991433 G C OR7A17 Silent p.L245L 0.12 TCGA-G2-AA3B-01 19 15587403 15587403 G C PGLYRP2 Silent p.L26L 0.32 TCGA-G2-AA3B-01 19 15734074 15734074 C G CYP4F8 RNA 0.26 TCGA-G2-AA3B-01 19 16229041 16229041 G T RAB8A Missense_Mutation p.D44Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 19 16687104 16687104 C G MED26 Missense_Mutation p.E513Q 0.30 tolerated(0.09) benign(0.111) TCGA-G2-AA3B-01 19 16870082 16870082 G T NWD1 Missense_Mutation p.D606Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3B-01 19 17305414 17305414 G A MYO9B Missense_Mutation p.E1060K 0.29 tolerated(0.3) benign(0.008) TCGA-G2-AA3B-01 19 17346315 17346315 G T NR2F6 Missense_Mutation p.F311L 0.56 tolerated(0.06) benign(0.07) TCGA-G2-AA3B-01 19 18943110 18943110 C G UPF1 Missense_Mutation p.S31C 0.07 deleterious(0) possibly_damaging(0.89) TCGA-G2-AA3B-01 19 19764808 19764808 C T ATP13A1 Silent p.V653V 0.42 TCGA-G2-AA3B-01 19 19823498 19823498 C G ZNF14 Missense_Mutation p.E198Q 0.29 tolerated(0.12) benign(0.009) TCGA-G2-AA3B-01 19 20308019 20308019 C T ZNF486 Missense_Mutation p.S167L 0.37 tolerated(0.13) probably_damaging(0.966) TCGA-G2-AA3B-01 19 20308235 20308235 A T ZNF486 Missense_Mutation p.K239I 0.15 deleterious(0.03) possibly_damaging(0.904) TCGA-G2-AA3B-01 19 20308236 20308236 A T ZNF486 Missense_Mutation p.K239N 0.13 deleterious(0.01) possibly_damaging(0.894) TCGA-G2-AA3B-01 19 21131687 21131687 G A ZNF85 Missense_Mutation p.E123K 0.10 deleterious(0.03) benign(0.391) TCGA-G2-AA3B-01 19 24310263 24310263 G C ZNF254 Missense_Mutation p.E487D 0.06 deleterious(0.04) benign(0.055) TCGA-G2-AA3B-01 19 24310282 24310282 G A ZNF254 Missense_Mutation p.E494K 0.06 deleterious(0.04) benign(0.371) TCGA-G2-AA3B-01 19 32844195 32844195 G A ZNF507 Silent p.V153V 0.25 TCGA-G2-AA3B-01 19 35435145 35435145 G A ZNF30 Silent p.E426E 0.57 TCGA-G2-AA3B-01 19 36109039 36109039 G A HAUS5 Missense_Mutation p.E255K 0.14 deleterious(0.05) possibly_damaging(0.547) TCGA-G2-AA3B-01 19 36275081 36275081 G A ARHGAP33 Missense_Mutation p.E477K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-G2-AA3B-01 19 36851365 36851365 C G ZFP14 Silent p.V69V 0.12 TCGA-G2-AA3B-01 19 36853105 36853105 G C ZFP14 Missense_Mutation p.F15L 0.15 tolerated(0.05) probably_damaging(0.987) TCGA-G2-AA3B-01 19 37117888 37117888 G C ZNF382 Missense_Mutation p.Q363H 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-G2-AA3B-01 19 3736305 3736305 G A TJP3 Missense_Mutation p.D433N 0.31 deleterious(0.02) probably_damaging(1) TCGA-G2-AA3B-01 19 37677401 37677401 C G ZNF585B Missense_Mutation p.K346N 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-G2-AA3B-01 19 37905235 37905235 C T ZNF569 Missense_Mutation p.E109K 0.16 tolerated(0.98) benign(0.001) TCGA-G2-AA3B-01 19 37975905 37975905 C T ZNF570 Nonsense_Mutation p.Q461* 0.05 TCGA-G2-AA3B-01 19 38924404 38924404 C T RYR1 5'Flank 0.37 TCGA-G2-AA3B-01 19 3969722 3969722 G C DAPK3 Missense_Mutation p.F4L 0.13 tolerated(0.06) benign(0.134) TCGA-G2-AA3B-01 19 39734657 39734657 G A IFNL3 Silent p.L133L 0.10 TCGA-G2-AA3B-01 19 3983208 3983208 G T EEF2 Silent p.I100I 0.27 TCGA-G2-AA3B-01 19 40732352 40732352 T G CNTD2 Missense_Mutation p.E66A 0.21 tolerated(0.12) benign(0.008) TCGA-G2-AA3B-01 19 40929308 40929308 G T SERTAD1 Nonsense_Mutation p.S49* 0.22 TCGA-G2-AA3B-01 19 4099409 4099409 C G MAP2K2 Missense_Mutation p.E237Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 19 41925047 41925047 G A BCKDHA Silent p.L164L 0.08 TCGA-G2-AA3B-01 19 42599721 42599721 G A POU2F2 Silent p.F310F 0.29 TCGA-G2-AA3B-01 19 43421933 43421933 G A PSG6 Silent p.L4L 0.47 TCGA-G2-AA3B-01 19 44301645 44301645 C T LYPD5 3'UTR 0.21 TCGA-G2-AA3B-01 19 44376892 44376892 C T ZNF404 Missense_Mutation p.E492K 0.24 deleterious(0.05) possibly_damaging(0.854) TCGA-G2-AA3B-01 19 44418823 44418823 C T ZNF45 Silent p.R255R 0.25 TCGA-G2-AA3B-01 19 44791407 44791407 G A ZNF235 Silent p.I727I 0.29 TCGA-G2-AA3B-01 19 44792476 44792476 C G ZNF235 Missense_Mutation p.G371A 0.53 deleterious(0.04) probably_damaging(1) TCGA-G2-AA3B-01 19 44891143 44891143 G C ZNF285 Missense_Mutation p.H422D 0.29 deleterious(0) probably_damaging(0.993) TCGA-G2-AA3B-01 19 45015147 45015147 G A CEACAM20 RNA 0.28 TCGA-G2-AA3B-01 19 45575833 45575833 C G ZNF296 Missense_Mutation p.E152Q 0.24 deleterious(0.03) benign(0.034) TCGA-G2-AA3B-01 19 46318292 46318292 G A RSPH6A Missense_Mutation p.P48L 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-G2-AA3B-01 19 46351147 46351147 C T SYMPK Missense_Mutation p.R180H 0.23 deleterious(0) probably_damaging(0.991) TCGA-G2-AA3B-01 19 4792709 4792709 G A FEM1A Silent p.L281L 0.18 TCGA-G2-AA3B-01 19 4852282 4852282 G C PLIN3 Missense_Mutation p.S127C 0.14 deleterious(0) benign(0.298) TCGA-G2-AA3B-01 19 48800464 48800464 C G CCDC114 Silent p.S594S 0.11 TCGA-G2-AA3B-01 19 49497082 49497082 G A RUVBL2 5'UTR 0.30 TCGA-G2-AA3B-01 19 49497085 49497085 G A RUVBL2 5'UTR 0.30 TCGA-G2-AA3B-01 19 49969051 49969051 G A ALDH16A1 Missense_Mutation p.R542Q 0.33 tolerated(0.17) benign(0.023) TCGA-G2-AA3B-01 19 50148320 50148320 G A SCAF1 Missense_Mutation p.E13K 0.08 unknown(0) TCGA-G2-AA3B-01 19 50361877 50361877 G A PTOV1 Silent p.L336L 0.65 TCGA-G2-AA3B-01 19 51582079 51582079 G C KLK14 Missense_Mutation p.S215C 0.23 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 19 51958763 51958763 C T SIGLEC8 Silent p.V320V 0.30 TCGA-G2-AA3B-01 19 53085619 53085619 G A ZNF701 Missense_Mutation p.E169K 0.09 tolerated(0.17) benign(0.024) TCGA-G2-AA3B-01 19 53268833 53268833 C T ZNF600 3'UTR 0.57 TCGA-G2-AA3B-01 19 53384539 53384539 C G ZNF320 Missense_Mutation p.K280N 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-G2-AA3B-01 19 53741614 53741614 C G ZNF677 Missense_Mutation p.L122F 0.39 tolerated(0.08) probably_damaging(0.994) TCGA-G2-AA3B-01 19 541370 541370 G A CDC34 Missense_Mutation p.E177K 0.73 tolerated(0.15) benign(0.011) TCGA-G2-AA3B-01 19 54182275 54182275 C T MIR515-1 RNA 0.04 TCGA-G2-AA3B-01 19 54395052 54395052 G A PRKCG Silent p.T218T 0.27 TCGA-G2-AA3B-01 19 55222181 55222181 C G AC098784.2 3'Flank 0.21 TCGA-G2-AA3B-01 19 56538994 56538994 C T NLRP5 Silent p.L465L 0.17 TCGA-G2-AA3B-01 19 56972100 56972100 C G ZNF667 Missense_Mutation p.E40Q 0.46 tolerated(0.1) benign(0.02) TCGA-G2-AA3B-01 19 57175041 57175041 G T ZNF835 Missense_Mutation p.P509H 0.28 deleterious_low_confidence(0.02) benign(0.091) TCGA-G2-AA3B-01 19 58018429 58018429 G T ZNF773 Missense_Mutation p.Q322H 0.45 tolerated(0.16) probably_damaging(0.998) TCGA-G2-AA3B-01 19 58049011 58049011 C T ZNF549 Silent p.S213S 0.13 TCGA-G2-AA3B-01 19 58549411 58549411 C G ZSCAN1 Silent p.P69P 0.50 TCGA-G2-AA3B-01 19 59010559 59010559 C A SLC27A5 Nonsense_Mutation p.E566* 0.57 TCGA-G2-AA3B-01 19 59067596 59067596 C G UBE2M Missense_Mutation p.E138Q 0.20 tolerated(0.11) probably_damaging(0.982) TCGA-G2-AA3B-01 19 6707483 6707483 C G C3 Missense_Mutation p.D681H 0.06 tolerated(0.11) benign(0.209) TCGA-G2-AA3B-01 19 6928165 6928165 G A EMR1 Silent p.L744L 0.05 TCGA-G2-AA3B-01 19 831823 831823 C A AZU1 Silent p.L234L 0.21 TCGA-G2-AA3B-01 19 831910 831910 C T AZU1 3'UTR 0.11 TCGA-G2-AA3B-01 19 8399278 8399278 C T KANK3 Silent p.K451K 0.25 TCGA-G2-AA3B-01 19 8969284 8969284 C G MUC16 Missense_Mutation p.E14354Q 0.29 possibly_damaging(0.801) TCGA-G2-AA3B-01 19 9066420 9066420 G C MUC16 Missense_Mutation p.S7009C 0.16 unknown(0) TCGA-G2-AA3B-01 19 9578847 9578847 G C ZNF560 Missense_Mutation p.S259C 0.07 deleterious(0.04) possibly_damaging(0.869) TCGA-G2-AA3B-01 19 9583925 9583925 G C ZNF560 Silent p.L56L 0.10 TCGA-G2-AA3B-01 19 9801086 9801086 C T ZNF812 Missense_Mutation p.E365K 0.08 tolerated(0.11) probably_damaging(0.994) TCGA-G2-AA3B-01 1 100366354 100366354 C G AGL Silent p.L1175L 0.17 TCGA-G2-AA3B-01 1 109192905 109192905 G A HENMT1 Silent p.I228I 0.44 TCGA-G2-AA3B-01 1 110230832 110230832 C G GSTM1 Nonsense_Mutation p.S26* 0.82 TCGA-G2-AA3B-01 1 112020609 112020609 C T C1orf162 Missense_Mutation p.S111L 0.23 deleterious(0.03) benign(0.014) TCGA-G2-AA3B-01 1 11308146 11308146 C G MTOR Silent p.L282L 0.15 TCGA-G2-AA3B-01 1 114123190 114123190 G C MAGI3 Missense_Mutation p.E154Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 1 11561505 11561505 C G PTCHD2 Missense_Mutation p.I152M 0.23 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-G2-AA3B-01 1 116931591 116931591 A C ATP1A1 Missense_Mutation p.N235T 0.11 deleterious(0) possibly_damaging(0.872) TCGA-G2-AA3B-01 1 11855349 11855349 C A MTHFR Missense_Mutation p.E279D 0.29 tolerated(0.1) benign(0.007) TCGA-G2-AA3B-01 1 120336844 120336844 G A REG4 3'UTR 0.50 TCGA-G2-AA3B-01 1 12337822 12337822 G A VPS13D Missense_Mutation p.G1393R 0.16 benign(0.297) TCGA-G2-AA3B-01 1 12921262 12921262 C G PRAMEF2 Silent p.L351L 0.20 TCGA-G2-AA3B-01 1 144930814 144930814 C G PDE4DIP Intron 0.13 TCGA-G2-AA3B-01 1 145535801 145535801 G C ITGA10 Missense_Mutation p.Q663H 0.29 tolerated(0.59) benign(0.062) TCGA-G2-AA3B-01 1 146057328 146057328 C G NBPF11 Missense_Mutation p.R95T 0.11 deleterious(0) benign(0) TCGA-G2-AA3B-01 1 149877306 149877306 A G SV2A Intron 0.56 TCGA-G2-AA3B-01 1 150921954 150921954 C T SETDB1 Silent p.L511L 0.04 TCGA-G2-AA3B-01 1 151109457 151109457 G A SEMA6C Missense_Mutation p.R284W 0.39 deleterious(0) probably_damaging(0.936) TCGA-G2-AA3B-01 1 151337144 151337144 C T SELENBP1 Missense_Mutation p.V432I 0.48 tolerated(0.06) benign(0.005) TCGA-G2-AA3B-01 1 152084813 152084813 C G TCHH Missense_Mutation p.E294Q 0.09 unknown(0) TCGA-G2-AA3B-01 1 152286608 152286608 C G FLG Missense_Mutation p.E252Q 0.30 benign(0.066) TCGA-G2-AA3B-01 1 152659531 152659531 G A LCE2B Missense_Mutation p.C71Y 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-G2-AA3B-01 1 152857121 152857121 G C SMCP Missense_Mutation p.E75Q 0.08 tolerated(0.05) possibly_damaging(0.607) TCGA-G2-AA3B-01 1 153911438 153911438 C G DENND4B Missense_Mutation p.E635Q 0.55 deleterious(0) probably_damaging(0.983) TCGA-G2-AA3B-01 1 154548288 154548288 C T CHRNB2 Silent p.L463L 0.34 TCGA-G2-AA3B-01 1 154940182 154940182 G C SHC1 Silent p.L316L 0.47 TCGA-G2-AA3B-01 1 155226122 155226122 C T SCAMP3 Missense_Mutation p.R329Q 0.37 tolerated(1) unknown(0) TCGA-G2-AA3B-01 1 155279912 155279912 G T FDPS Missense_Mutation p.Q85H 0.09 deleterious(0.03) benign(0.008) TCGA-G2-AA3B-01 1 155491384 155491384 C G ASH1L 5'UTR 0.15 TCGA-G2-AA3B-01 1 155911572 155911572 G A RXFP4 Silent p.L24L 0.52 TCGA-G2-AA3B-01 1 155912050 155912050 G A RXFP4 Missense_Mutation p.E184K 0.40 tolerated(0.42) possibly_damaging(0.828) TCGA-G2-AA3B-01 1 155912094 155912094 G A RXFP4 Silent p.R198R 0.38 TCGA-G2-AA3B-01 1 156046476 156046476 G A MEX3A Silent p.C484C 0.14 TCGA-G2-AA3B-01 1 156518209 156518209 G T IQGAP3 Missense_Mutation p.F688L 0.54 tolerated(0.69) benign(0.002) TCGA-G2-AA3B-01 1 156616607 156616607 C T BCAN Missense_Mutation p.R36C 0.40 deleterious(0.01) possibly_damaging(0.863) TCGA-G2-AA3B-01 1 156647076 156647076 G A NES 5'UTR 0.46 TCGA-G2-AA3B-01 1 1573174 1573174 C T CDK11B Missense_Mutation p.E475K 0.26 unknown(0) TCGA-G2-AA3B-01 1 158577164 158577164 A C OR10Z1 Missense_Mutation p.K312N 0.07 deleterious(0) benign(0.051) TCGA-G2-AA3B-01 1 158911862 158911862 A G PYHIN1 Silent p.V225V 0.14 TCGA-G2-AA3B-01 1 15894522 15894522 C A DNAJC16 Silent p.L733L 0.13 TCGA-G2-AA3B-01 1 159825786 159825786 G A VSIG8 Silent p.L286L 0.40 TCGA-G2-AA3B-01 1 159832291 159832291 G C VSIG8 Missense_Mutation p.F7L 0.10 tolerated_low_confidence(0.45) benign(0) TCGA-G2-AA3B-01 1 160252287 160252287 C G PEX19 Missense_Mutation p.D118H 0.16 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 1 161094084 161094084 C G DEDD Missense_Mutation p.E57Q 0.56 tolerated(0.41) probably_damaging(0.996) TCGA-G2-AA3B-01 1 16258291 16258291 C T SPEN Silent p.L1852L 0.11 TCGA-G2-AA3B-01 1 16260668 16260668 C G SPEN Missense_Mutation p.Q2645E 0.13 benign(0.276) TCGA-G2-AA3B-01 1 16632313 16632313 G A FBXO42 Nonsense_Mutation p.Q118* 0.54 TCGA-G2-AA3B-01 1 174973906 174973906 G A CACYBP Missense_Mutation p.E58K 0.11 tolerated(0.34) benign(0.012) TCGA-G2-AA3B-01 1 179504085 179504085 T C AXDND1 Missense_Mutation p.S1007P 0.32 tolerated(0.17) unknown(0) TCGA-G2-AA3B-01 1 180158727 180158727 C A QSOX1 Missense_Mutation p.S353Y 0.58 deleterious(0) probably_damaging(0.976) TCGA-G2-AA3B-01 1 183604789 183604789 C A ARPC5 Silent p.S2S 0.84 TCGA-G2-AA3B-01 1 186047318 186047318 A C HMCN1 Silent p.G2855G 0.19 TCGA-G2-AA3B-01 1 186089219 186089219 G A HMCN1 Missense_Mutation p.M4057I 0.73 benign(0.033) TCGA-G2-AA3B-01 1 18961018 18961018 G A PAX7 Missense_Mutation p.G103S 0.54 deleterious(0.02) probably_damaging(0.976) TCGA-G2-AA3B-01 1 193119499 193119499 C G CDC73 Missense_Mutation p.F298L 0.34 deleterious(0) possibly_damaging(0.897) TCGA-G2-AA3B-01 1 197071989 197071989 T G ASPM Missense_Mutation p.Q2131P 0.07 deleterious(0.05) possibly_damaging(0.616) TCGA-G2-AA3B-01 1 205042211 205042211 G A CNTN2 Missense_Mutation p.D954N 0.50 tolerated(0.2) possibly_damaging(0.655) TCGA-G2-AA3B-01 1 205739904 205739904 C T RAB7L1 Missense_Mutation p.E153K 0.43 deleterious(0) probably_damaging(0.936) TCGA-G2-AA3B-01 1 21031102 21031102 C G KIF17 Missense_Mutation p.E321Q 0.51 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 1 214169991 214169991 G C PROX1 Missense_Mutation p.R38T 0.31 deleterious_low_confidence(0.03) benign(0.185) TCGA-G2-AA3B-01 1 214170440 214170440 G A PROX1 Missense_Mutation p.E188K 0.29 tolerated(0.18) benign(0.032) TCGA-G2-AA3B-01 1 216595450 216595450 G C USH2A Missense_Mutation p.Q77E 0.37 benign(0.028) TCGA-G2-AA3B-01 1 22211278 22211278 C G HSPG2 Missense_Mutation p.E497Q 0.24 possibly_damaging(0.84) TCGA-G2-AA3B-01 1 223987671 223987671 G A TP53BP2 Missense_Mutation p.S472F 0.45 deleterious(0.03) benign(0.248) TCGA-G2-AA3B-01 1 226180268 226180268 T A SDE2 Silent p.A117A 0.20 TCGA-G2-AA3B-01 1 226180269 226180269 C T SDE2 Splice_Site p.X117_splice 0.20 TCGA-G2-AA3B-01 1 22817960 22817960 C G ZBTB40 Silent p.L255L 0.35 TCGA-G2-AA3B-01 1 23189568 23189568 G T EPHB2 Nonsense_Mutation p.E284* 0.15 TCGA-G2-AA3B-01 1 235292031 235292031 C G TOMM20 5'UTR 0.29 TCGA-G2-AA3B-01 1 26163917 26163917 G A AUNIP Silent p.F69F 0.16 TCGA-G2-AA3B-01 1 27250652 27250652 G A NUDC Missense_Mutation p.E52K 0.38 tolerated(0.18) benign(0.26) TCGA-G2-AA3B-01 1 27876708 27876708 G A AHDC1 Missense_Mutation p.P640L 0.41 deleterious(0) possibly_damaging(0.851) TCGA-G2-AA3B-01 1 28116078 28116078 C A STX12 Missense_Mutation p.Q42K 0.65 deleterious(0.04) benign(0.255) TCGA-G2-AA3B-01 1 36235472 36235472 G A CLSPN 5'UTR 0.20 TCGA-G2-AA3B-01 1 36932836 36932836 C T CSF3R Missense_Mutation p.E679K 0.45 tolerated(0.31) benign(0.038) TCGA-G2-AA3B-01 1 39876466 39876466 G C KIAA0754 Missense_Mutation p.E41Q 0.16 possibly_damaging(0.607) TCGA-G2-AA3B-01 1 39893212 39893212 G C MACF1 Missense_Mutation p.E3406Q 0.13 probably_damaging(0.941) TCGA-G2-AA3B-01 1 39920611 39920611 C T MACF1 Missense_Mutation p.R4914C 0.23 probably_damaging(1) TCGA-G2-AA3B-01 1 40129051 40129051 G C NT5C1A Silent p.L163L 0.44 TCGA-G2-AA3B-01 1 40137689 40137689 C A NT5C1A Nonsense_Mutation p.E8* 0.63 TCGA-G2-AA3B-01 1 43011226 43011226 G A CCDC30 Missense_Mutation p.R134Q 0.12 tolerated(0.06) benign(0.124) TCGA-G2-AA3B-01 1 43825981 43825981 C T CDC20 Missense_Mutation p.P225L 0.17 tolerated(0.08) benign(0.082) TCGA-G2-AA3B-01 1 44463575 44463575 G C SLC6A9 Silent p.L626L 0.21 TCGA-G2-AA3B-01 1 45293264 45293264 C G PTCH2 Silent p.L727L 0.42 TCGA-G2-AA3B-01 1 47110895 47110895 C G ATPAF1 Missense_Mutation p.E231Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 1 52399020 52399020 C T RAB3B Missense_Mutation p.E148K 0.17 deleterious(0.02) benign(0.316) TCGA-G2-AA3B-01 1 54474610 54474610 C T LDLRAD1 3'UTR 0.45 TCGA-G2-AA3B-01 1 54675719 54675719 G A MRPL37 Silent p.K249K 0.20 TCGA-G2-AA3B-01 1 62675752 62675752 G C L1TD1 Missense_Mutation p.E436Q 0.15 tolerated(0.36) benign(0.002) TCGA-G2-AA3B-01 1 64643586 64643586 T - ROR1 Frame_Shift_Del p.L622* 0.39 TCGA-G2-AA3B-01 1 70503886 70503886 T A LRRC7 Silent p.P755P 0.16 TCGA-G2-AA3B-01 1 75055606 75055606 G C C1orf173 Missense_Mutation p.P629A 0.04 tolerated(0.06) benign(0.056) TCGA-G2-AA3B-01 1 78481927 78481927 C G DNAJB4 Nonsense_Mutation p.S337* 0.08 TCGA-G2-AA3B-01 1 85331113 85331113 G A LPAR3 Missense_Mutation p.R231W 0.09 deleterious(0) probably_damaging(0.992) TCGA-G2-AA3B-01 1 91818148 91818148 G C HFM1 Missense_Mutation p.S631C 0.14 deleterious(0) probably_damaging(0.99) TCGA-G2-AA3B-01 1 92200453 92200453 C T TGFBR3 Missense_Mutation p.E150K 0.05 tolerated(0.13) benign(0.298) TCGA-G2-AA3B-01 1 94048201 94048201 G A BCAR3 Missense_Mutation p.S448L 0.31 tolerated(0.83) benign(0) TCGA-G2-AA3B-01 1 94461712 94461712 C A ABCA4 Missense_Mutation p.D2257Y 0.18 deleterious(0) possibly_damaging(0.594) TCGA-G2-AA3B-01 1 94463667 94463667 C G ABCA4 Splice_Site p.X2160_splice 0.33 TCGA-G2-AA3B-01 1 94522291 94522291 G T ABCA4 Missense_Mutation p.L750M 0.40 deleterious(0.02) probably_damaging(1) TCGA-G2-AA3B-01 1 95448580 95448580 G C ALG14 3'UTR 0.17 TCGA-G2-AA3B-01 1 9910706 9910706 C T CTNNBIP1 3'UTR 0.48 TCGA-G2-AA3B-01 20 1559137 1559137 C T RP4-576H24.4 Missense_Mutation p.E93K 0.15 deleterious(0) benign(0.155) TCGA-G2-AA3B-01 20 17341282 17341282 G A PCSK2 Missense_Mutation p.D168N 0.68 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 20 1902322 1902322 C G SIRPA Missense_Mutation p.L240V 0.37 deleterious(0) benign(0.391) TCGA-G2-AA3B-01 20 23965870 23965870 C T GGTLC1 Missense_Mutation p.E221K 0.50 tolerated(0.56) benign(0.007) TCGA-G2-AA3B-01 20 30585105 30585105 C G XKR7 Missense_Mutation p.R529G 0.38 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 20 3204021 3204021 G C ITPA Missense_Mutation p.E166D 0.14 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 20 33574744 33574744 C A MYH7B Silent p.V362V 0.31 TCGA-G2-AA3B-01 20 34090367 34090367 G C CEP250 Silent p.L1390L 0.10 TCGA-G2-AA3B-01 20 34090820 34090820 G C CEP250 Missense_Mutation p.Q1541H 0.08 probably_damaging(0.999) TCGA-G2-AA3B-01 20 35128773 35128773 G C DLGAP4 Missense_Mutation p.Q754H 0.29 tolerated(0.12) benign(0.067) TCGA-G2-AA3B-01 20 35128993 35128993 G C DLGAP4 Missense_Mutation p.E828Q 0.28 deleterious(0.01) possibly_damaging(0.519) TCGA-G2-AA3B-01 20 35242277 35242277 C T SLA2 Missense_Mutation p.D260N 0.24 tolerated_low_confidence(0.06) benign(0.006) TCGA-G2-AA3B-01 20 36375039 36375039 G C CTNNBL1 Intron 0.07 TCGA-G2-AA3B-01 20 3846824 3846824 C T MAVS 3'UTR 0.29 TCGA-G2-AA3B-01 20 40112154 40112154 C G CHD6 Missense_Mutation p.E755Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 20 46290638 46290638 C G SULF2 Silent p.L791L 0.09 TCGA-G2-AA3B-01 20 47273601 47273601 G A PREX1 Silent p.L700L 0.27 TCGA-G2-AA3B-01 20 47273692 47273692 G C PREX1 Missense_Mutation p.S670C 0.30 tolerated(0.06) benign(0.273) TCGA-G2-AA3B-01 20 47736554 47736554 G A STAU1 Nonsense_Mutation p.Q360* 0.13 TCGA-G2-AA3B-01 20 49227396 49227396 G A FAM65C Silent p.I136I 0.53 TCGA-G2-AA3B-01 20 54573593 54573593 C T CBLN4 3'UTR 0.09 TCGA-G2-AA3B-01 20 57768402 57768402 C T ZNF831 Silent p.P776P 0.16 TCGA-G2-AA3B-01 20 60775941 60775941 C T MTG2 Silent p.V343V 0.08 TCGA-G2-AA3B-01 20 60967523 60967523 G C CABLES2 Nonsense_Mutation p.S338* 0.08 TCGA-G2-AA3B-01 20 62319338 62319338 G T RTEL1 Missense_Mutation p.Q534H 0.42 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 21 15352237 15352237 C T ANKRD20A11P 5'Flank 0.47 TCGA-G2-AA3B-01 21 15748072 15748072 C T HSPA13 Missense_Mutation p.D217N 0.07 tolerated(0.18) possibly_damaging(0.529) TCGA-G2-AA3B-01 21 30521509 30521509 G C MAP3K7CL Splice_Site p.X124_splice 0.09 TCGA-G2-AA3B-01 21 33063167 33063167 C G SCAF4 Missense_Mutation p.E610Q 0.21 possibly_damaging(0.775) TCGA-G2-AA3B-01 21 34072209 34072209 C G SYNJ1 Missense_Mutation p.D179H 0.06 deleterious(0) probably_damaging(0.979) TCGA-G2-AA3B-01 21 35183365 35183365 G C ITSN1 Missense_Mutation p.E802D 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3B-01 21 37418257 37418257 C T SETD4 Missense_Mutation p.E117K 0.07 deleterious(0) probably_damaging(0.973) TCGA-G2-AA3B-01 21 43543119 43543119 C T UMODL1 Silent p.I1130I 0.39 TCGA-G2-AA3B-01 21 43766597 43766597 C T TFF2 3'UTR 0.09 TCGA-G2-AA3B-01 21 44323806 44323806 G C NDUFV3 Missense_Mutation p.K228N 0.23 deleterious(0.01) possibly_damaging(0.647) TCGA-G2-AA3B-01 21 46309319 46309319 C T ITGB2 Silent p.L583L 0.48 TCGA-G2-AA3B-01 21 47831538 47831538 G A PCNT Missense_Mutation p.D1851N 0.08 benign(0.011) TCGA-G2-AA3B-01 22 19511503 19511503 G C CLDN5 Missense_Mutation p.F177L 0.23 tolerated(1) benign(0.003) TCGA-G2-AA3B-01 22 20812283 20812283 C G KLHL22 Missense_Mutation p.D373H 0.30 deleterious(0) probably_damaging(0.986) TCGA-G2-AA3B-01 22 26157032 26157032 C A MYO18B 5'UTR 0.14 TCGA-G2-AA3B-01 22 26761388 26761388 C A SEZ6L Missense_Mutation p.Q884K 0.05 tolerated(0.06) benign(0.026) TCGA-G2-AA3B-01 22 27012150 27012150 G C CRYBB1 Missense_Mutation p.P45R 0.48 deleterious(0.03) possibly_damaging(0.661) TCGA-G2-AA3B-01 22 29177153 29177153 G T CCDC117 Nonsense_Mutation p.E153* 0.17 TCGA-G2-AA3B-01 22 29747711 29747711 G C AP1B1 Missense_Mutation p.Q348E 0.28 tolerated(0.99) benign(0.001) TCGA-G2-AA3B-01 22 31799166 31799166 C G DRG1 Missense_Mutation p.I106M 0.26 tolerated(0.21) possibly_damaging(0.649) TCGA-G2-AA3B-01 22 32924877 32924877 G C SYN3 Missense_Mutation p.S405C 0.17 deleterious(0) unknown(0) TCGA-G2-AA3B-01 22 38164097 38164097 G A TRIOBP Silent p.K2163K 0.41 TCGA-G2-AA3B-01 22 40059831 40059831 C T CACNA1I Silent p.I1194I 0.52 TCGA-G2-AA3B-01 22 41077824 41077824 C T MCHR1 Silent p.F387F 0.04 TCGA-G2-AA3B-01 22 42322114 42322114 C T TNFRSF13C Missense_Mutation p.D120N 0.31 tolerated(0.44) benign(0) TCGA-G2-AA3B-01 22 42992255 42992255 C G POLDIP3 Missense_Mutation p.L250F 0.10 deleterious(0.04) possibly_damaging(0.842) TCGA-G2-AA3B-01 22 45182344 45182344 G A PRR5-ARHGAP8 Silent p.Q233Q 0.30 TCGA-G2-AA3B-01 22 45241147 45241147 A C ARHGAP8 Splice_Site p.X321_splice 0.17 TCGA-G2-AA3B-01 2 113405244 113405244 G A SLC20A1 Missense_Mutation p.V164M 0.06 deleterious(0) possibly_damaging(0.668) TCGA-G2-AA3B-01 2 118579511 118579511 G C DDX18 Missense_Mutation p.M275I 0.32 deleterious(0.02) benign(0.075) TCGA-G2-AA3B-01 2 118579777 118579777 G C DDX18 Missense_Mutation p.D336H 0.20 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 2 120075062 120075062 G A C2orf76 Missense_Mutation p.H68Y 0.33 tolerated(0.07) possibly_damaging(0.461) TCGA-G2-AA3B-01 2 128346127 128346127 C G MYO7B Missense_Mutation p.F617L 0.16 tolerated(0.5) benign(0.016) TCGA-G2-AA3B-01 2 128699705 128699705 G C SAP130 Missense_Mutation p.Q1043E 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-G2-AA3B-01 2 130865602 130865602 G C POTEF Missense_Mutation p.S369C 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.765) TCGA-G2-AA3B-01 2 136481533 136481533 G A R3HDM1 Missense_Mutation p.E991K 0.13 deleterious(0) benign(0.359) TCGA-G2-AA3B-01 2 141816473 141816473 G C LRP1B Missense_Mutation p.Q463E 0.11 benign(0.001) TCGA-G2-AA3B-01 2 160087249 160087249 C G TANC1 Missense_Mutation p.S1771C 0.23 tolerated_low_confidence(0.07) benign(0.008) TCGA-G2-AA3B-01 2 162092053 162092053 C G TANK 3'UTR 0.27 TCGA-G2-AA3B-01 2 164466371 164466371 C A FIGN Silent p.A657A 0.23 TCGA-G2-AA3B-01 2 165947801 165947801 C G SCN3A Missense_Mutation p.R1621P 0.55 deleterious(0) benign(0.108) TCGA-G2-AA3B-01 2 166187985 166187985 C T SCN2A Silent p.I765I 0.20 TCGA-G2-AA3B-01 2 1667492 1667492 C A PXDN Silent p.S484S 0.30 TCGA-G2-AA3B-01 2 168114752 168114752 G A XIRP2 3'UTR 0.33 TCGA-G2-AA3B-01 2 170417041 170417041 T C FASTKD1 Missense_Mutation p.K276R 0.46 tolerated(0.21) benign(0.001) TCGA-G2-AA3B-01 2 170938397 170938397 A G UBR3 3'UTR 0.38 TCGA-G2-AA3B-01 2 178592834 178592834 C G PDE11A Missense_Mutation p.D619H 0.55 deleterious(0.01) probably_damaging(0.995) TCGA-G2-AA3B-01 2 179236888 179236888 G C OSBPL6 Missense_Mutation p.L466F 0.49 deleterious(0.02) probably_damaging(1) TCGA-G2-AA3B-01 2 179413832 179413832 C G TTN Missense_Mutation p.E30841Q 0.34 TCGA-G2-AA3B-01 2 179444736 179444736 G A TTN Silent p.F22426F 0.36 TCGA-G2-AA3B-01 2 179517257 179517257 G C TTN Missense_Mutation p.P13019A 0.30 TCGA-G2-AA3B-01 2 187455218 187455218 C T ITGAV Silent p.F51F 0.73 TCGA-G2-AA3B-01 2 196729560 196729560 G A DNAH7 Silent p.F2273F 0.49 TCGA-G2-AA3B-01 2 210560522 210560522 A G MAP2 Missense_Mutation p.I1210V 0.19 deleterious_low_confidence(0.03) benign(0.206) TCGA-G2-AA3B-01 2 211464286 211464286 G C CPS1 Splice_Site p.X523_splice 0.22 TCGA-G2-AA3B-01 2 220397128 220397128 C G ASIC4 Missense_Mutation p.S443C 0.58 deleterious(0.01) probably_damaging(0.962) TCGA-G2-AA3B-01 2 227953366 227953366 C T COL4A4 Intron 0.21 TCGA-G2-AA3B-01 2 228882145 228882145 C G SPHKAP Missense_Mutation p.R1142T 0.48 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 2 231065663 231065663 G A SP110 Missense_Mutation p.S356L 0.19 deleterious(0.03) possibly_damaging(0.504) TCGA-G2-AA3B-01 2 234545777 234545777 C G UGT1A10 Missense_Mutation p.F203L 0.15 deleterious(0.02) possibly_damaging(0.717) TCGA-G2-AA3B-01 2 237074742 237074742 C A GBX2 Nonsense_Mutation p.E288* 0.27 TCGA-G2-AA3B-01 2 242511723 242511723 C T BOK Silent p.L175L 0.44 TCGA-G2-AA3B-01 2 25982503 25982503 T C ASXL2 Missense_Mutation p.R263G 0.42 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 2 28836940 28836940 T C PLB1 Missense_Mutation p.Y1058H 0.20 tolerated(0.1) benign(0.285) TCGA-G2-AA3B-01 2 28843819 28843819 T C PLB1 Silent p.N1167N 0.41 TCGA-G2-AA3B-01 2 33614370 33614370 G C LTBP1 Missense_Mutation p.D1611H 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-G2-AA3B-01 2 40342585 40342585 A G SLC8A1 Silent p.S910S 0.35 TCGA-G2-AA3B-01 2 43919773 43919773 C G PLEKHH2 Missense_Mutation p.Q103E 0.17 tolerated(0.41) benign(0.194) TCGA-G2-AA3B-01 2 45879351 45879351 C T PRKCE Missense_Mutation p.L38F 0.10 tolerated(0.08) possibly_damaging(0.835) TCGA-G2-AA3B-01 2 47698196 47698196 C T MSH2 Missense_Mutation p.S585F 0.11 deleterious(0) possibly_damaging(0.905) TCGA-G2-AA3B-01 2 48808382 48808382 A C STON1-GTF2A1L Missense_Mutation p.K204Q 0.25 tolerated(0.18) benign(0.05) TCGA-G2-AA3B-01 2 50723087 50723087 A G NRXN1 Missense_Mutation p.I1049T 0.56 tolerated(1) benign(0.011) TCGA-G2-AA3B-01 2 55561703 55561703 C T CCDC88A Missense_Mutation p.E752K 0.13 deleterious(0.02) probably_damaging(0.978) TCGA-G2-AA3B-01 2 61441806 61441806 G T USP34 Missense_Mutation p.L2691I 0.33 deleterious(0.03) probably_damaging(0.997) TCGA-G2-AA3B-01 2 61441807 61441807 G T USP34 Silent p.S2690S 0.34 TCGA-G2-AA3B-01 2 61447506 61447506 C G USP34 Missense_Mutation p.Q2662H 0.45 deleterious(0.03) benign(0.254) TCGA-G2-AA3B-01 2 63053319 63053319 A T EHBP1 Missense_Mutation p.K137I 0.27 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 2 65309759 65309759 C G CEP68 Missense_Mutation p.L732V 0.46 tolerated(0.39) benign(0.025) TCGA-G2-AA3B-01 2 73285717 73285717 G A SFXN5 Silent p.F37F 0.39 TCGA-G2-AA3B-01 2 74512955 74512955 C T SLC4A5 Missense_Mutation p.E116K 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-G2-AA3B-01 2 74783562 74783562 G A DOK1 Missense_Mutation p.G256E 0.44 tolerated(0.12) benign(0.13) TCGA-G2-AA3B-01 2 89160423 89160423 G A IGKJ4 Silent p.G4G 0.40 TCGA-G2-AA3B-01 2 9541463 9541463 G A ASAP2 Missense_Mutation p.E962K 0.11 deleterious(0) possibly_damaging(0.5) TCGA-G2-AA3B-01 2 96692049 96692049 G A GPAT2 Missense_Mutation p.S346L 0.17 tolerated(0.26) unknown(0) TCGA-G2-AA3B-01 3 100469284 100469284 A G ABI3BP 3'UTR 0.51 TCGA-G2-AA3B-01 3 108118017 108118017 C G MYH15 Missense_Mutation p.E1632Q 0.06 tolerated(0.07) benign(0.197) TCGA-G2-AA3B-01 3 111962924 111962924 C G SLC9C1 Splice_Site p.X400_splice 0.17 TCGA-G2-AA3B-01 3 112184871 112184871 A G BTLA 3'UTR 0.49 TCGA-G2-AA3B-01 3 113342289 113342289 G C SIDT1 Missense_Mutation p.L702F 0.09 deleterious(0.02) probably_damaging(0.995) TCGA-G2-AA3B-01 3 113524349 113524349 A C ATP6V1A Missense_Mutation p.K580Q 0.59 tolerated(0.34) benign(0.008) TCGA-G2-AA3B-01 3 113955249 113955249 C G ZNF80 Missense_Mutation p.G225R 0.29 deleterious(0.01) possibly_damaging(0.864) TCGA-G2-AA3B-01 3 119528917 119528917 G A NR1I2 Missense_Mutation p.M108I 0.29 tolerated(0.27) benign(0.034) TCGA-G2-AA3B-01 3 119962903 119962903 G C GPR156 Missense_Mutation p.P15A 0.47 tolerated(0.1) benign(0.234) TCGA-G2-AA3B-01 3 120469741 120469741 T G GTF2E1 Missense_Mutation p.I114M 0.31 tolerated(0.12) probably_damaging(0.995) TCGA-G2-AA3B-01 3 121215657 121215657 G C POLQ Missense_Mutation p.A759G 0.06 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 3 121417734 121417734 C G GOLGB1 Missense_Mutation p.E546Q 0.20 benign(0.251) TCGA-G2-AA3B-01 3 121615266 121615266 C G SLC15A2 Missense_Mutation p.S40C 0.30 tolerated(0.06) possibly_damaging(0.77) TCGA-G2-AA3B-01 3 122123117 122123117 G C FAM162A Missense_Mutation p.R57T 0.15 deleterious(0.01) possibly_damaging(0.724) TCGA-G2-AA3B-01 3 122126241 122126241 G A FAM162A Intron 0.13 TCGA-G2-AA3B-01 3 122928200 122928200 C G SEC22A Missense_Mutation p.Q46E 0.45 tolerated(0.05) benign(0.078) TCGA-G2-AA3B-01 3 126180360 126180360 G A ZXDC Intron 0.23 TCGA-G2-AA3B-01 3 127786429 127786429 G C SEC61A1 Missense_Mutation p.E381Q 0.27 tolerated(0.05) benign(0.024) TCGA-G2-AA3B-01 3 128982814 128982814 A G COPG1 Missense_Mutation p.N399S 0.44 tolerated(0.34) benign(0.034) TCGA-G2-AA3B-01 3 129695613 129695613 G C TRH Missense_Mutation p.E95Q 0.12 deleterious(0.04) possibly_damaging(0.685) TCGA-G2-AA3B-01 3 130656283 130656283 C T ATP2C1 Silent p.I146I 0.40 TCGA-G2-AA3B-01 3 132202409 132202409 A G DNAJC13 Missense_Mutation p.Y1057C 0.39 deleterious(0) benign(0.212) TCGA-G2-AA3B-01 3 136323277 136323277 C G STAG1 Missense_Mutation p.K57N 0.18 tolerated(0.12) benign(0.052) TCGA-G2-AA3B-01 3 140406715 140406715 G C TRIM42 Missense_Mutation p.Q397H 0.10 deleterious(0.03) probably_damaging(0.922) TCGA-G2-AA3B-01 3 140409818 140409818 G C TRIM42 Missense_Mutation p.W623C 0.29 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 3 142094679 142094679 G T XRN1 Nonsense_Mutation p.S980* 0.40 TCGA-G2-AA3B-01 3 156763331 156763331 G C LEKR1 Missense_Mutation p.R624T 0.49 tolerated(0.11) benign(0.402) TCGA-G2-AA3B-01 3 160025478 160025478 G A IFT80 Missense_Mutation p.S350L 0.12 deleterious(0.02) benign(0.021) TCGA-G2-AA3B-01 3 170781596 170781596 G C TNIK 3'UTR 0.26 TCGA-G2-AA3B-01 3 170801984 170801984 C T TNIK Silent p.K1043K 0.10 TCGA-G2-AA3B-01 3 172025174 172025174 C G FNDC3B Silent p.S361S 0.14 TCGA-G2-AA3B-01 3 172064204 172064204 G A FNDC3B Missense_Mutation p.D780N 0.42 tolerated(1) benign(0.008) TCGA-G2-AA3B-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.34 deleterious(0.02) probably_damaging(0.959) TCGA-G2-AA3B-01 3 183824031 183824031 C G HTR3E Silent p.L373L 0.32 TCGA-G2-AA3B-01 3 184922317 184922317 C G EHHADH Missense_Mutation p.R266T 0.41 tolerated(0.07) benign(0.347) TCGA-G2-AA3B-01 3 185906167 185906167 C T DGKG Missense_Mutation p.C640Y 0.45 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 3 189705370 189705370 G A LEPREL1 Silent p.Y348Y 0.38 TCGA-G2-AA3B-01 3 193335031 193335031 G A OPA1 Silent p.K171K 0.27 TCGA-G2-AA3B-01 3 20082251 20082251 C T KAT2B Silent p.L94L 0.67 TCGA-G2-AA3B-01 3 36884168 36884168 G A TRANK1 Missense_Mutation p.T1698I 0.21 deleterious(0) probably_damaging(0.984) TCGA-G2-AA3B-01 3 40552976 40552976 G C ZNF620 Missense_Mutation p.E14Q 0.52 deleterious(0.04) probably_damaging(0.96) TCGA-G2-AA3B-01 3 42684037 42684037 G C NKTR Missense_Mutation p.R1364T 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-G2-AA3B-01 3 43388851 43388851 T C SNRK Missense_Mutation p.I367T 0.76 deleterious(0.05) benign(0.155) TCGA-G2-AA3B-01 3 44943329 44943329 G A TGM4 Missense_Mutation p.D293N 0.57 tolerated(1) benign(0.005) TCGA-G2-AA3B-01 3 44943391 44943391 G C TGM4 Missense_Mutation p.E313D 0.73 deleterious(0.04) possibly_damaging(0.583) TCGA-G2-AA3B-01 3 45637103 45637103 C T LIMD1 Silent p.L244L 0.41 TCGA-G2-AA3B-01 3 45637110 45637110 C T LIMD1 Nonsense_Mutation p.Q247* 0.49 TCGA-G2-AA3B-01 3 49163562 49163562 C G LAMB2 Missense_Mutation p.E728Q 0.69 tolerated(0.06) possibly_damaging(0.808) TCGA-G2-AA3B-01 3 50095162 50095162 G A RBM6 Silent p.V565V 0.79 TCGA-G2-AA3B-01 3 50095425 50095425 G C RBM6 Missense_Mutation p.G653A 0.78 tolerated(0.51) benign(0.025) TCGA-G2-AA3B-01 3 50095429 50095429 G A RBM6 Silent p.E654E 0.78 TCGA-G2-AA3B-01 3 54958790 54958790 G A LRTM1 Nonsense_Mutation p.Q154* 0.07 TCGA-G2-AA3B-01 3 56766332 56766332 C G ARHGEF3 Missense_Mutation p.D420H 0.13 deleterious(0) probably_damaging(0.984) TCGA-G2-AA3B-01 3 58368262 58368262 C G PXK Missense_Mutation p.L75V 0.20 deleterious(0) probably_damaging(0.984) TCGA-G2-AA3B-01 3 62153648 62153648 G C PTPRG Missense_Mutation p.E282Q 0.35 deleterious(0.01) probably_damaging(0.923) TCGA-G2-AA3B-01 3 64085079 64085079 C T PRICKLE2 Missense_Mutation p.R728H 0.10 tolerated(0.32) benign(0.001) TCGA-G2-AA3B-01 3 97806692 97806692 G C OR5AC2 Missense_Mutation p.D226H 0.06 deleterious(0) possibly_damaging(0.852) TCGA-G2-AA3B-01 3 9803397 9803397 G C CAMK1 Missense_Mutation p.I158M 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-G2-AA3B-01 4 110737358 110737358 G C GAR1 Missense_Mutation p.R13P 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-G2-AA3B-01 4 113352015 113352015 G A ALPK1 Missense_Mutation p.E438K 0.10 tolerated(1) benign(0) TCGA-G2-AA3B-01 4 115589294 115589294 G A UGT8 Missense_Mutation p.E366K 0.14 deleterious(0) probably_damaging(0.959) TCGA-G2-AA3B-01 4 118975531 118975531 G C NDST3 Missense_Mutation p.E156Q 0.24 deleterious(0.03) benign(0.077) TCGA-G2-AA3B-01 4 119252891 119252891 G A PRSS12 Silent p.I317I 0.19 TCGA-G2-AA3B-01 4 121738001 121738001 G T PRDM5 Missense_Mutation p.F243L 0.24 deleterious(0.02) benign(0.058) TCGA-G2-AA3B-01 4 134072252 134072252 A C PCDH10 Missense_Mutation p.E319D 0.45 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3B-01 4 152680029 152680029 C G PET112 Missense_Mutation p.Q74H 0.38 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 4 157771462 157771462 C G PDGFC Missense_Mutation p.W75C 0.33 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 4 164054328 164054328 G C NAF1 Silent p.L337L 0.07 TCGA-G2-AA3B-01 4 164247524 164247524 C G NPY1R Missense_Mutation p.L61F 0.30 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 4 175898199 175898199 T - ADAM29 Frame_Shift_Del p.F509Lfs*16 0.28 TCGA-G2-AA3B-01 4 187521283 187521283 G A FAT1 Nonsense_Mutation p.Q3958* 0.21 TCGA-G2-AA3B-01 4 25391770 25391770 C T ANAPC4 Silent p.L176L 0.17 TCGA-G2-AA3B-01 4 36163133 36163133 C G ARAP2 Missense_Mutation p.R738T 0.06 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3B-01 4 38775591 38775591 C G TLR10 Missense_Mutation p.E541Q 0.23 tolerated(0.47) benign(0.007) TCGA-G2-AA3B-01 4 38776964 38776964 C T TLR10 Missense_Mutation p.R83K 0.53 tolerated(0.2) possibly_damaging(0.519) TCGA-G2-AA3B-01 4 46042911 46042911 C G GABRG1 3'UTR 0.50 TCGA-G2-AA3B-01 4 57889615 57889615 G A POLR2B Missense_Mutation p.E879K 0.27 tolerated(0.09) possibly_damaging(0.472) TCGA-G2-AA3B-01 4 69431361 69431361 G A UGT2B17 Missense_Mutation p.P268S 0.82 deleterious(0.01) possibly_damaging(0.879) TCGA-G2-AA3B-01 4 69512743 69512743 C T UGT2B15 3'UTR 0.21 TCGA-G2-AA3B-01 4 69512806 69512806 C T UGT2B15 3'UTR 0.15 TCGA-G2-AA3B-01 4 71555505 71555505 G C UTP3 Missense_Mutation p.D371H 0.17 deleterious(0) possibly_damaging(0.86) TCGA-G2-AA3B-01 4 71654602 71654602 T A RUFY3 Missense_Mutation p.V384D 0.15 deleterious(0) probably_damaging(0.986) TCGA-G2-AA3B-01 4 74719087 74719087 C G PF4V1 Missense_Mutation p.S3C 0.17 tolerated_low_confidence(0.12) unknown(0) TCGA-G2-AA3B-01 4 79199812 79199812 G A FRAS1 Missense_Mutation p.E329K 0.15 possibly_damaging(0.822) TCGA-G2-AA3B-01 4 79199884 79199884 G A FRAS1 Missense_Mutation p.E353K 0.09 benign(0.01) TCGA-G2-AA3B-01 4 844769 844769 C T GAK Missense_Mutation p.M1204I 0.13 deleterious(0) probably_damaging(0.986) TCGA-G2-AA3B-01 4 89649952 89649952 C T FAM13A Intron 0.64 TCGA-G2-AA3B-01 5 127595503 127595503 C A FBN2 Nonsense_Mutation p.E2795* 0.20 TCGA-G2-AA3B-01 5 132222059 132222059 G C AFF4 Missense_Mutation p.F1014L 0.17 deleterious(0) probably_damaging(0.966) TCGA-G2-AA3B-01 5 132234008 132234008 C T AFF4 Missense_Mutation p.E435K 0.23 deleterious(0) probably_damaging(0.987) TCGA-G2-AA3B-01 5 13923440 13923440 G C DNAH5 Missense_Mutation p.F129L 0.05 benign(0.153) TCGA-G2-AA3B-01 5 140186904 140186904 C A PCDHA4 Missense_Mutation p.F44L 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.701) TCGA-G2-AA3B-01 5 140626446 140626446 G C PCDHB15 Missense_Mutation p.E434Q 0.75 tolerated_low_confidence(1) benign(0.01) TCGA-G2-AA3B-01 5 140768593 140768593 C A PCDHGB4 Missense_Mutation p.T381N 0.31 tolerated(0.21) benign(0.005) TCGA-G2-AA3B-01 5 140788374 140788374 G A PCDHGB6 Missense_Mutation p.R202Q 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-G2-AA3B-01 5 14304687 14304687 C G TRIO Missense_Mutation p.L496V 0.04 benign(0.126) TCGA-G2-AA3B-01 5 14481697 14481697 G C TRIO Missense_Mutation p.M2145I 0.14 benign(0) TCGA-G2-AA3B-01 5 146752763 146752763 C T STK32A Missense_Mutation p.S270F 0.26 deleterious(0.02) probably_damaging(0.962) TCGA-G2-AA3B-01 5 172537598 172537598 G C CREBRF Missense_Mutation p.Q497H 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-G2-AA3B-01 5 178139370 178139370 G C ZNF354A Missense_Mutation p.F503L 0.22 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3B-01 5 19503204 19503204 G A CDH18 Silent p.I509I 0.05 TCGA-G2-AA3B-01 5 24487828 24487828 G A CDH10 Missense_Mutation p.R771W 0.14 deleterious(0) probably_damaging(0.993) TCGA-G2-AA3B-01 5 304328 304328 C T PDCD6 Missense_Mutation p.S67L 0.17 tolerated(1) benign(0.006) TCGA-G2-AA3B-01 5 32400206 32400206 A C ZFR Missense_Mutation p.V540G 0.06 tolerated(0.46) unknown(0) TCGA-G2-AA3B-01 5 33881350 33881350 C G ADAMTS12 Missense_Mutation p.K121N 0.08 deleterious(0) possibly_damaging(0.572) TCGA-G2-AA3B-01 5 37176048 37176048 G A C5orf42 Nonsense_Mutation p.Q1981* 0.10 TCGA-G2-AA3B-01 5 37294531 37294531 G C NUP155 Missense_Mutation p.T1277S 0.08 tolerated(0.62) benign(0.001) TCGA-G2-AA3B-01 5 37350278 37350278 G A NUP155 Silent p.F271F 0.17 TCGA-G2-AA3B-01 5 39202404 39202404 G C FYB Missense_Mutation p.S230C 0.13 tolerated(0.11) possibly_damaging(0.625) TCGA-G2-AA3B-01 5 39202487 39202487 G C FYB Silent p.L202L 0.15 TCGA-G2-AA3B-01 5 40769524 40769524 G T PRKAA1 Nonsense_Mutation p.S212* 0.09 TCGA-G2-AA3B-01 5 40769603 40769603 G C PRKAA1 Missense_Mutation p.L186V 0.09 deleterious(0) possibly_damaging(0.607) TCGA-G2-AA3B-01 5 40832806 40832806 G C RPL37 Intron 0.08 TCGA-G2-AA3B-01 5 41150087 41150087 C G C6 Missense_Mutation p.Q777H 0.09 deleterious(0.02) benign(0.048) TCGA-G2-AA3B-01 5 41382415 41382415 C A PLCXD3 Nonsense_Mutation p.E109* 0.27 TCGA-G2-AA3B-01 5 41382524 41382524 G C PLCXD3 Silent p.L72L 0.05 TCGA-G2-AA3B-01 5 41939561 41939561 A T FBXO4 Missense_Mutation p.E306V 0.27 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 5 43529943 43529943 C G PAIP1 Missense_Mutation p.D431H 0.09 deleterious(0) possibly_damaging(0.752) TCGA-G2-AA3B-01 5 43651878 43651878 C G NNT Missense_Mutation p.F585L 0.14 deleterious(0) possibly_damaging(0.755) TCGA-G2-AA3B-01 5 462333 462333 C G EXOC3 Missense_Mutation p.P522A 0.14 tolerated(0.92) benign(0.01) TCGA-G2-AA3B-01 5 49963909 49963909 C A PARP8 Missense_Mutation p.F32L 0.29 deleterious_low_confidence(0.01) benign(0.042) TCGA-G2-AA3B-01 5 52225454 52225454 G A ITGA1 Splice_Site p.X899_splice 0.30 TCGA-G2-AA3B-01 5 5461390 5461390 C T KIAA0947 Missense_Mutation p.S648F 0.14 tolerated(0.06) benign(0.037) TCGA-G2-AA3B-01 5 63510096 63510096 G C RNF180 Missense_Mutation p.E315Q 0.58 tolerated(0.05) possibly_damaging(0.727) TCGA-G2-AA3B-01 5 95234307 95234307 G T ELL2 Missense_Mutation p.P388T 0.43 tolerated(0.12) benign(0.069) TCGA-G2-AA3B-01 5 95735691 95735691 C T PCSK1 Missense_Mutation p.E466K 0.72 tolerated(0.94) benign(0.003) TCGA-G2-AA3B-01 6 100841640 100841640 G T SIM1 Missense_Mutation p.D431E 0.29 tolerated(0.47) benign(0.003) TCGA-G2-AA3B-01 6 100897504 100897504 G A SIM1 Silent p.L140L 0.40 TCGA-G2-AA3B-01 6 110541017 110541017 G A CDC40 Missense_Mutation p.E429K 0.15 tolerated(0.3) benign(0.088) TCGA-G2-AA3B-01 6 112440483 112440483 C A LAMA4 Missense_Mutation p.R1566L 0.44 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 6 119232887 119232887 G C MCM9 Missense_Mutation p.Q360E 0.23 deleterious(0) probably_damaging(0.98) TCGA-G2-AA3B-01 6 12162085 12162085 C G HIVEP1 Missense_Mutation p.Q2301E 0.10 deleterious(0) benign(0.211) TCGA-G2-AA3B-01 6 124604274 124604274 C T NKAIN2 Missense_Mutation p.R60C 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-G2-AA3B-01 6 128410869 128410869 C T PTPRK Silent p.E477E 0.16 TCGA-G2-AA3B-01 6 128540226 128540226 C G PTPRK Missense_Mutation p.D237H 0.15 tolerated(0.07) possibly_damaging(0.804) TCGA-G2-AA3B-01 6 133100529 133100529 C A SLC18B1 Nonsense_Mutation p.E225* 0.35 TCGA-G2-AA3B-01 6 13365755 13365755 C T GFOD1 Missense_Mutation p.M131I 0.84 deleterious(0.01) possibly_damaging(0.481) TCGA-G2-AA3B-01 6 137113081 137113081 G T MAP3K5 Missense_Mutation p.S72Y 0.21 tolerated(0.83) benign(0) TCGA-G2-AA3B-01 6 138428341 138428341 G C PERP Missense_Mutation p.S46W 0.27 deleterious(0.02) probably_damaging(0.992) TCGA-G2-AA3B-01 6 143092003 143092003 C G HIVEP2 Missense_Mutation p.K1291N 0.16 tolerated(0.07) benign(0.016) TCGA-G2-AA3B-01 6 146870651 146870651 G A RAB32 Missense_Mutation p.G101D 0.41 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 6 149262465 149262465 G A UST Silent p.G114G 0.11 TCGA-G2-AA3B-01 6 149777857 149777857 C T ZC3H12D Missense_Mutation p.E209K 0.20 deleterious(0) probably_damaging(0.94) TCGA-G2-AA3B-01 6 159457058 159457058 C T TAGAP Missense_Mutation p.R666Q 0.41 tolerated(0.33) benign(0.001) TCGA-G2-AA3B-01 6 166571941 166571941 G C T Silent p.V390V 0.32 TCGA-G2-AA3B-01 6 167571197 167571197 G A GPR31 Silent p.F41F 0.22 TCGA-G2-AA3B-01 6 168319586 168319586 G C MLLT4 Missense_Mutation p.E954Q 0.31 tolerated(0.06) probably_damaging(0.936) TCGA-G2-AA3B-01 6 168352586 168352586 C G MLLT4 Missense_Mutation p.L1511V 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-G2-AA3B-01 6 168370544 168370544 C T MLLT4 Nonsense_Mutation p.Q291* 0.28 TCGA-G2-AA3B-01 6 170632292 170632292 C A FAM120B Missense_Mutation p.F620L 0.26 tolerated(0.97) benign(0.051) TCGA-G2-AA3B-01 6 17675821 17675821 G C NUP153 Missense_Mutation p.S172C 0.12 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 6 26205029 26205029 G A HIST1H4E Missense_Mutation p.E53K 0.09 tolerated(0.1) benign(0.122) TCGA-G2-AA3B-01 6 28500171 28500171 G T GPX5 Nonsense_Mutation p.E145* 0.07 TCGA-G2-AA3B-01 6 30036411 30036411 G C PPP1R11 Missense_Mutation p.E38D 0.06 tolerated(0.74) benign(0.005) TCGA-G2-AA3B-01 6 31125280 31125280 G C CCHCR1 Nonsense_Mutation p.S33* 0.27 TCGA-G2-AA3B-01 6 32053620 32053620 G C TNXB Missense_Mutation p.P1019A 0.09 probably_damaging(0.994) TCGA-G2-AA3B-01 6 32138789 32138789 G A AGPAT1 Nonsense_Mutation p.R87* 0.07 TCGA-G2-AA3B-01 6 32945722 32945722 G C BRD2 Missense_Mutation p.E506D 0.06 tolerated(1) benign(0.014) TCGA-G2-AA3B-01 6 33281835 33281835 C T TAPBP 5'UTR 0.45 TCGA-G2-AA3B-01 6 38905888 38905888 C T DNAH8 Missense_Mutation p.A3684V 0.10 benign(0.001) TCGA-G2-AA3B-01 6 39040716 39040716 C G GLP1R Missense_Mutation p.I196M 0.25 deleterious(0.03) possibly_damaging(0.895) TCGA-G2-AA3B-01 6 41740660 41740660 G A FRS3 Silent p.I97I 0.50 TCGA-G2-AA3B-01 6 43096945 43096945 C T PTK7 Missense_Mutation p.R112W 0.63 tolerated(0.06) benign(0.435) TCGA-G2-AA3B-01 6 43109405 43109405 G A PTK7 Splice_Site p.X548_splice 0.14 TCGA-G2-AA3B-01 6 43109959 43109959 G C PTK7 Missense_Mutation p.E665Q 0.09 tolerated(0.09) possibly_damaging(0.845) TCGA-G2-AA3B-01 6 43191853 43191853 G C CUL9 Missense_Mutation p.Q2435H 0.59 deleterious(0.01) probably_damaging(0.986) TCGA-G2-AA3B-01 6 43519175 43519175 C G XPO5 Missense_Mutation p.D530H 0.47 deleterious(0.04) possibly_damaging(0.503) TCGA-G2-AA3B-01 6 44273474 44273474 C T AARS2 Silent p.L450L 0.15 TCGA-G2-AA3B-01 6 50786664 50786664 C G TFAP2B Silent p.V20V 0.08 TCGA-G2-AA3B-01 6 51613215 51613215 G A PKHD1 Silent p.L3067L 0.18 TCGA-G2-AA3B-01 6 51930823 51930823 G C PKHD1 Missense_Mutation p.I277M 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-G2-AA3B-01 6 56497790 56497790 G C DST Missense_Mutation p.L686V 0.28 probably_damaging(0.999) TCGA-G2-AA3B-01 6 57013008 57013008 G C ZNF451 Missense_Mutation p.D709H 0.61 deleterious(0.01) benign(0.149) TCGA-G2-AA3B-01 6 66063466 66063467 - A EYS Frame_Shift_Ins p.L448Ffs*25 0.20 TCGA-G2-AA3B-01 6 66205361 66205361 A T EYS 5'UTR 0.36 TCGA-G2-AA3B-01 6 76124547 76124547 C T FILIP1 Missense_Mutation p.D48N 0.24 tolerated(0.27) benign(0.031) TCGA-G2-AA3B-01 6 87943153 87943153 G C ZNF292 Missense_Mutation p.D217H 0.14 deleterious(0) possibly_damaging(0.897) TCGA-G2-AA3B-01 6 87993946 87993946 G A GJB7 3'UTR 0.11 TCGA-G2-AA3B-01 6 88258313 88258313 G A RARS2 Silent p.I149I 0.16 TCGA-G2-AA3B-01 6 89808556 89808556 G C SRSF12 Missense_Mutation p.S176C 0.53 deleterious(0) possibly_damaging(0.869) TCGA-G2-AA3B-01 6 90576358 90576358 G A CASP8AP2 RNA 0.38 TCGA-G2-AA3B-01 6 97676802 97676802 C T MMS22L Silent p.L669L 0.49 TCGA-G2-AA3B-01 7 100391801 100391801 G T ZAN Intron 0.72 TCGA-G2-AA3B-01 7 100684167 100684167 C G MUC17 Nonsense_Mutation p.S3157* 0.17 TCGA-G2-AA3B-01 7 100685841 100685841 C G MUC17 Nonsense_Mutation p.S3715* 0.18 TCGA-G2-AA3B-01 7 103281034 103281034 G C RELN Silent p.L675L 0.73 TCGA-G2-AA3B-01 7 106509095 106509095 C G PIK3CG Silent p.V363V 0.28 TCGA-G2-AA3B-01 7 10979667 10979667 G T NDUFA4 Silent p.I6I 0.10 TCGA-G2-AA3B-01 7 116340289 116340289 G C MET Missense_Mutation p.R384T 0.08 tolerated(0.08) benign(0.208) TCGA-G2-AA3B-01 7 129938623 129938623 G C CPA4 Missense_Mutation p.E36Q 0.12 tolerated(1) benign(0.024) TCGA-G2-AA3B-01 7 130002789 130002789 T C CPA5 Missense_Mutation p.I234T 0.56 deleterious(0.01) benign(0.284) TCGA-G2-AA3B-01 7 133689840 133689840 G A EXOC4 Missense_Mutation p.E842K 0.69 tolerated(0.05) benign(0.062) TCGA-G2-AA3B-01 7 134254185 134254185 G C AKR1B15 Missense_Mutation p.E113D 0.22 tolerated(0.21) benign(0.058) TCGA-G2-AA3B-01 7 134881081 134881081 C T WDR91 Silent p.E353E 0.12 TCGA-G2-AA3B-01 7 137776586 137776586 G T AKR1D1 Missense_Mutation p.D112Y 0.35 deleterious(0) probably_damaging(0.988) TCGA-G2-AA3B-01 7 142459622 142459622 C T PRSS1 Intron 0.21 TCGA-G2-AA3B-01 7 148800670 148800670 G C ZNF425 3'UTR 0.26 TCGA-G2-AA3B-01 7 148895472 148895472 C T ZNF282 Silent p.F71F 0.17 TCGA-G2-AA3B-01 7 149480665 149480665 G A SSPO RNA 0.08 TCGA-G2-AA3B-01 7 149558190 149558190 C G ZNF862 Missense_Mutation p.F647L 0.28 tolerated(0.94) benign(0.003) TCGA-G2-AA3B-01 7 151680103 151680103 C G GALNTL5 Missense_Mutation p.P134R 0.15 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 7 151845790 151845790 C G KMT2C Missense_Mutation p.E4408Q 0.72 probably_damaging(0.998) TCGA-G2-AA3B-01 7 16502518 16502518 G T SOSTDC1 Silent p.I92I 0.06 TCGA-G2-AA3B-01 7 20438491 20438504 TTCAGAAGTGAAAG - ITGB8 Frame_Shift_Del p.E387Gfs*11 0.42 TCGA-G2-AA3B-01 7 21628952 21628952 C G DNAH11 Missense_Mutation p.F700L 0.23 benign(0.005) TCGA-G2-AA3B-01 7 24681452 24681452 G A MPP6 Missense_Mutation p.E79K 0.39 deleterious(0.02) possibly_damaging(0.896) TCGA-G2-AA3B-01 7 27211545 27211545 C G HOXA10 Missense_Mutation p.E402D 0.54 deleterious(0) possibly_damaging(0.816) TCGA-G2-AA3B-01 7 28547236 28547236 C G CREB5 Missense_Mutation p.Q58E 0.20 deleterious(0.03) probably_damaging(0.977) TCGA-G2-AA3B-01 7 37780482 37780482 G A GPR141 Missense_Mutation p.E163K 0.11 tolerated(0.4) benign(0.006) TCGA-G2-AA3B-01 7 4014064 4014064 G C SDK1 Missense_Mutation p.E627D 0.18 tolerated(0.99) benign(0.004) TCGA-G2-AA3B-01 7 44575857 44575857 C G NPC1L1 Missense_Mutation p.E618Q 0.51 deleterious(0.02) probably_damaging(0.927) TCGA-G2-AA3B-01 7 50097593 50097593 G A ZPBP Missense_Mutation p.A160V 0.19 tolerated(0.79) benign(0) TCGA-G2-AA3B-01 7 53104150 53104150 C T POM121L12 Silent p.S262S 0.15 TCGA-G2-AA3B-01 7 5567222 5567222 C T ACTB 3'UTR 0.38 TCGA-G2-AA3B-01 7 56123323 56123323 C T CCT6A Missense_Mutation p.H115Y 0.50 deleterious(0) probably_damaging(0.965) TCGA-G2-AA3B-01 7 5633095 5633095 C G FSCN1 Silent p.L176L 0.52 TCGA-G2-AA3B-01 7 5780799 5780799 C G RNF216 Silent p.G283G 0.09 TCGA-G2-AA3B-01 7 64442486 64442486 C G ZNF117 5'UTR 0.25 TCGA-G2-AA3B-01 7 65751506 65751506 G C TPST1 Missense_Mutation p.R285T 0.11 deleterious(0.02) possibly_damaging(0.834) TCGA-G2-AA3B-01 7 66274273 66274273 C T KCTD7 3'UTR 0.12 TCGA-G2-AA3B-01 7 70228071 70228071 C T AUTS2 Missense_Mutation p.P320S 0.65 deleterious(0.04) probably_damaging(0.998) TCGA-G2-AA3B-01 7 72430561 72430561 C T TRIM74 Silent p.E239E 0.49 TCGA-G2-AA3B-01 7 74212563 74212563 C G GTF2IRD2 Missense_Mutation p.E430Q 0.20 deleterious(0.04) possibly_damaging(0.809) TCGA-G2-AA3B-01 7 82763761 82763761 A G PCLO Silent p.S1035S 0.39 TCGA-G2-AA3B-01 7 86808950 86808950 G C DMTF1 Silent p.L203L 0.07 TCGA-G2-AA3B-01 7 87022134 87022134 C G CROT Silent p.S559S 0.13 TCGA-G2-AA3B-01 7 87564471 87564471 G C ADAM22 Silent p.T72T 0.31 TCGA-G2-AA3B-01 7 91867019 91867019 C T KRIT1 Missense_Mutation p.R106K 0.61 tolerated(0.75) benign(0) TCGA-G2-AA3B-01 7 93108738 93108738 G T CALCR Silent p.R63R 0.09 TCGA-G2-AA3B-01 7 98645449 98645449 G A SMURF1 Missense_Mutation p.S363F 0.04 deleterious(0.01) benign(0.212) TCGA-G2-AA3B-01 7 99097327 99097327 C G ZNF394 Missense_Mutation p.E130D 0.09 deleterious(0.02) benign(0.315) TCGA-G2-AA3B-01 7 99129890 99129890 G C ZKSCAN5 3'UTR 0.30 TCGA-G2-AA3B-01 8 101074914 101074914 G C RGS22 Missense_Mutation p.I473M 0.42 deleterious(0.01) possibly_damaging(0.653) TCGA-G2-AA3B-01 8 103291056 103291056 C G UBR5 Missense_Mutation p.E2096Q 0.05 tolerated(0.15) benign(0.003) TCGA-G2-AA3B-01 8 104330830 104330830 C G FZD6 Missense_Mutation p.L64V 0.22 tolerated(0.05) benign(0.319) TCGA-G2-AA3B-01 8 105601101 105601101 C G LRP12 Missense_Mutation p.E9Q 0.40 tolerated_low_confidence(0.33) benign(0.024) TCGA-G2-AA3B-01 8 106815512 106815512 C T ZFPM2 Nonsense_Mutation p.Q1068* 0.37 TCGA-G2-AA3B-01 8 113266540 113266540 G C CSMD3 Missense_Mutation p.S3351C 0.09 deleterious(0) benign(0.001) TCGA-G2-AA3B-01 8 113697704 113697704 G A CSMD3 Missense_Mutation p.H805Y 0.23 deleterious(0.04) probably_damaging(0.938) TCGA-G2-AA3B-01 8 118159333 118159333 A G SLC30A8 Missense_Mutation p.K71R 0.17 tolerated(1) benign(0.008) TCGA-G2-AA3B-01 8 125463473 125463473 C T TRMT12 Missense_Mutation p.S102L 0.41 deleterious(0.01) possibly_damaging(0.461) TCGA-G2-AA3B-01 8 12950222 12950222 T C DLC1 Silent p.A1213A 0.67 TCGA-G2-AA3B-01 8 141742717 141742717 G C PTK2 Intron 0.48 TCGA-G2-AA3B-01 8 142367717 142367717 C G GPR20 Missense_Mutation p.G103R 0.07 deleterious(0.04) probably_damaging(0.965) TCGA-G2-AA3B-01 8 144889739 144889739 G A SCRIB Missense_Mutation p.R721C 0.28 probably_damaging(0.999) TCGA-G2-AA3B-01 8 144900579 144900579 G A PUF60 Silent p.I158I 0.28 TCGA-G2-AA3B-01 8 144991023 144991023 G A PLEC Silent p.I4459I 0.42 TCGA-G2-AA3B-01 8 144991279 144991279 G A PLEC Missense_Mutation p.S4374L 0.30 probably_damaging(0.952) TCGA-G2-AA3B-01 8 145267981 145267981 C T MROH1 Intron 0.27 TCGA-G2-AA3B-01 8 145745405 145745405 C G LRRC14 Nonsense_Mutation p.S99* 0.09 TCGA-G2-AA3B-01 8 145998792 145998792 C G ZNF34 Missense_Mutation p.Q514H 0.36 deleterious(0.03) probably_damaging(0.961) TCGA-G2-AA3B-01 8 22333014 22333014 A G PPP3CC Silent p.V83V 0.64 TCGA-G2-AA3B-01 8 33354239 33354239 G A MAK16 Missense_Mutation p.D207N 0.56 tolerated(0.13) benign(0.109) TCGA-G2-AA3B-01 8 38373935 38373935 G A C8orf86 Silent p.I137I 0.23 TCGA-G2-AA3B-01 8 39627032 39627032 G C ADAM2 Nonsense_Mutation p.S364* 0.40 TCGA-G2-AA3B-01 8 41557053 41557053 G C ANK1 Missense_Mutation p.I866M 0.23 tolerated(0.3) benign(0.01) TCGA-G2-AA3B-01 8 442722 442722 C G TDRP Missense_Mutation p.E79Q 0.06 deleterious(0.01) possibly_damaging(0.892) TCGA-G2-AA3B-01 8 53569401 53569401 C G RB1CC1 Missense_Mutation p.Q996H 0.29 tolerated_low_confidence(0.43) benign(0.001) TCGA-G2-AA3B-01 8 62559382 62559382 C T ASPH Silent p.E182E 0.07 TCGA-G2-AA3B-01 8 68089948 68089948 G A CSPP1 Missense_Mutation p.R1043Q 0.05 tolerated(0.93) benign(0.002) TCGA-G2-AA3B-01 8 70533285 70533285 G C SULF1 Missense_Mutation p.E465Q 0.46 deleterious(0.02) possibly_damaging(0.643) TCGA-G2-AA3B-01 8 86025181 86025181 C T LRRCC1 Missense_Mutation p.H131Y 0.06 deleterious(0.01) possibly_damaging(0.733) TCGA-G2-AA3B-01 8 91013744 91013744 C T DECR1 Silent p.F8F 0.41 TCGA-G2-AA3B-01 8 95895084 95895084 C A CCNE2 Nonsense_Mutation p.E290* 0.10 TCGA-G2-AA3B-01 8 97892102 97892102 G A CPQ Missense_Mutation p.E240K 0.10 tolerated(0.06) benign(0.374) TCGA-G2-AA3B-01 8 99440250 99440250 G A KCNS2 Missense_Mutation p.E15K 0.50 tolerated(0.23) benign(0.079) TCGA-G2-AA3B-01 9 107547777 107547777 G C ABCA1 Missense_Mutation p.S2182C 0.35 deleterious(0.04) possibly_damaging(0.88) TCGA-G2-AA3B-01 9 114521556 114521556 G C C9orf84 Intron 0.20 TCGA-G2-AA3B-01 9 125315777 125315777 C G OR1N2 Missense_Mutation p.S110W 0.09 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3B-01 9 125920338 125920338 G C STRBP Missense_Mutation p.S333C 0.51 deleterious(0.01) probably_damaging(0.962) TCGA-G2-AA3B-01 9 127951943 127951943 G C PPP6C Missense_Mutation p.L19V 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3B-01 9 128347887 128347887 C G MAPKAP1 Silent p.L206L 0.14 TCGA-G2-AA3B-01 9 13168526 13168526 C T MPDZ Missense_Mutation p.M1031I 0.79 tolerated(0.1) benign(0.181) TCGA-G2-AA3B-01 9 135522335 135522335 G T DDX31 Missense_Mutation p.P465T 0.37 tolerated(0.19) benign(0.065) TCGA-G2-AA3B-01 9 135782175 135782175 C T TSC1 Missense_Mutation p.G461R 0.09 tolerated(0.51) benign(0.189) TCGA-G2-AA3B-01 9 139358919 139358919 G C SEC16A Missense_Mutation p.L1467V 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-G2-AA3B-01 9 139699037 139699037 C G CCDC183 Missense_Mutation p.I250M 0.07 deleterious(0) probably_damaging(0.976) TCGA-G2-AA3B-01 9 140093677 140093677 C G TPRN Missense_Mutation p.R496P 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-G2-AA3B-01 9 17791268 17791268 C G SH3GL2 Missense_Mutation p.Q222E 0.79 tolerated(0.3) benign(0.351) TCGA-G2-AA3B-01 9 17791318 17791318 C G SH3GL2 Silent p.V238V 0.77 TCGA-G2-AA3B-01 9 21206643 21206643 G C IFNA10 Missense_Mutation p.L152V 0.77 tolerated(0.73) benign(0.009) TCGA-G2-AA3B-01 9 21334288 21334288 G A KLHL9 Silent p.L191L 0.85 TCGA-G2-AA3B-01 9 34660498 34660498 C G IL11RA Intron 0.52 TCGA-G2-AA3B-01 9 34660733 34660733 C A IL11RA Intron 0.32 TCGA-G2-AA3B-01 9 37441722 37441722 G A ZBTB5 Missense_Mutation p.S276F 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G2-AA3B-01 9 37529146 37529146 G A FBXO10 Silent p.L561L 0.64 TCGA-G2-AA3B-01 9 37529147 37529147 G A FBXO10 Silent p.I560I 0.64 TCGA-G2-AA3B-01 9 4663239 4663239 C G PPAPDC2 Silent p.L288L 0.19 TCGA-G2-AA3B-01 9 75441871 75441871 C T TMC1 Missense_Mutation p.S697L 0.05 deleterious(0) benign(0.41) TCGA-G2-AA3B-01 9 86587824 86587824 G C HNRNPK Missense_Mutation p.L194V 0.09 tolerated(0.15) possibly_damaging(0.659) TCGA-G2-AA3B-01 9 96278456 96278456 G C FAM120A Missense_Mutation p.Q441H 0.42 tolerated(0.15) benign(0.005) TCGA-G2-AA3B-01 9 96318705 96318705 C T FAM120A Silent p.L772L 0.11 TCGA-G2-AA3B-01 9 98222006 98222006 G C PTCH1 Missense_Mutation p.I921M 0.15 tolerated(0.09) possibly_damaging(0.472) TCGA-G2-AA3B-01 9 99711919 99711919 C G HIATL2 Missense_Mutation p.D105H 0.68 deleterious(0) probably_damaging(1) TCGA-G2-AA3B-01 X 101096684 101096684 C T NXF5 Missense_Mutation p.D68N 0.24 tolerated(0.6) benign(0.168) TCGA-G2-AA3B-01 X 105450252 105450252 C T MUM1L1 Missense_Mutation p.S276L 0.17 tolerated(0.09) benign(0.009) TCGA-G2-AA3B-01 X 109694611 109694611 T C RGAG1 Missense_Mutation p.S256P 0.25 deleterious(0) probably_damaging(0.994) TCGA-G2-AA3B-01 X 110490614 110490614 G A CAPN6 Silent p.D575D 0.19 TCGA-G2-AA3B-01 X 110491217 110491217 T C CAPN6 Silent p.E496E 0.22 TCGA-G2-AA3B-01 X 111090496 111090496 C G TRPC5 Missense_Mutation p.D516H 0.48 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 X 122778431 122778431 G A THOC2 Silent p.I552I 0.47 TCGA-G2-AA3B-01 X 123657222 123657222 C G TENM1 Missense_Mutation p.E1009Q 0.22 deleterious(0) probably_damaging(0.961) TCGA-G2-AA3B-01 X 12738760 12738760 A T FRMPD4 3'UTR 0.27 TCGA-G2-AA3B-01 X 128723853 128723853 A T OCRL Missense_Mutation p.N834I 0.52 deleterious(0) probably_damaging(0.971) TCGA-G2-AA3B-01 X 130407803 130407803 C G IGSF1 Missense_Mutation p.Q1331H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.632) TCGA-G2-AA3B-01 X 135825921 135825921 G C ARHGEF6 Missense_Mutation p.Q162E 0.19 deleterious(0.02) benign(0.279) TCGA-G2-AA3B-01 X 135862910 135862910 C G ARHGEF6 Silent p.L44L 0.20 TCGA-G2-AA3B-01 X 138886666 138886666 G A ATP11C Silent p.V176V 0.23 TCGA-G2-AA3B-01 X 140985341 140985341 G A MAGEC3 Intron 0.19 TCGA-G2-AA3B-01 X 14861749 14861749 C T FANCB Silent p.L840L 0.26 TCGA-G2-AA3B-01 X 151092236 151092236 G A MAGEA4 Missense_Mutation p.E34K 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-G2-AA3B-01 X 151808855 151808855 G A GABRQ Missense_Mutation p.E56K 0.20 deleterious(0.03) benign(0.437) TCGA-G2-AA3B-01 X 153247906 153247906 C G TMEM187 Silent p.L131L 0.33 TCGA-G2-AA3B-01 X 153665590 153665590 G C GDI1 5'UTR 0.28 TCGA-G2-AA3B-01 X 153699942 153699942 C T PLXNA3 Silent p.L1827L 0.14 TCGA-G2-AA3B-01 X 153716110 153716110 G A SLC10A3 Silent p.I390I 0.21 TCGA-G2-AA3B-01 X 153744169 153744169 G T FAM3A 5'UTR 0.26 TCGA-G2-AA3B-01 X 154197620 154197620 G C F8 Missense_Mutation p.S332C 0.15 tolerated(0.08) probably_damaging(0.951) TCGA-G2-AA3B-01 X 17088107 17088107 G C REPS2 Missense_Mutation p.E442Q 0.07 tolerated(0.3) benign(0.027) TCGA-G2-AA3B-01 X 17819188 17819188 C T RAI2 Missense_Mutation p.E315K 0.47 deleterious(0) unknown(0) TCGA-G2-AA3B-01 X 18338455 18338455 C G SCML2 Missense_Mutation p.K161N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-G2-AA3B-01 X 18593487 18593487 C G CDKL5 Silent p.V53V 0.12 TCGA-G2-AA3B-01 X 19049104 19049104 G C GPR64 Nonsense_Mutation p.S119* 0.05 TCGA-G2-AA3B-01 X 23411547 23411547 G A PTCHD1 Missense_Mutation p.D638N 0.49 tolerated(0.92) benign(0.001) TCGA-G2-AA3B-01 X 26157673 26157673 G T MAGEB18 Nonsense_Mutation p.E191* 0.30 TCGA-G2-AA3B-01 X 30269469 30269469 G C MAGEB1 Missense_Mutation p.E287Q 0.13 deleterious(0.03) possibly_damaging(0.796) TCGA-G2-AA3B-01 X 31165508 31165508 C G DMD Missense_Mutation p.E3561Q 0.11 possibly_damaging(0.607) TCGA-G2-AA3B-01 X 3241797 3241797 G A MXRA5 Silent p.V643V 0.56 TCGA-G2-AA3B-01 X 32536202 32536202 C T DMD Missense_Mutation p.E739K 0.06 possibly_damaging(0.828) TCGA-G2-AA3B-01 X 36007600 36007600 G C CXorf22 Missense_Mutation p.E960Q 0.27 tolerated(0.18) benign(0.032) TCGA-G2-AA3B-01 X 44945181 44945181 G T KDM6A Missense_Mutation p.V1169F 0.49 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3B-01 X 48419301 48419301 G A TBC1D25 Missense_Mutation p.D669N 0.26 tolerated(0.13) benign(0.008) TCGA-G2-AA3B-01 X 51151111 51151111 G A CXorf67 Missense_Mutation p.G415R 0.22 tolerated(0.05) benign(0.057) TCGA-G2-AA3B-01 X 53454999 53454999 G T RIBC1 Nonsense_Mutation p.E56* 0.14 TCGA-G2-AA3B-01 X 68836526 68836526 C G EDA Missense_Mutation p.S125C 0.40 tolerated_low_confidence(0.07) unknown(0) TCGA-G2-AA3B-01 X 70621380 70621380 G C TAF1 Silent p.L1283L 0.28 TCGA-G2-AA3B-01 X 70764432 70764432 C T OGT Missense_Mutation p.R160C 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-G2-AA3B-01 X 83128356 83128356 C A CYLC1 Missense_Mutation p.L214I 0.32 tolerated(1) benign(0.012) TCGA-G2-AA3B-01 X 83723935 83723935 A G HDX Missense_Mutation p.F266L 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-G2-AA3B-01 X 84347526 84347526 G T SATL1 3'UTR 0.21 TCGA-G2-AA3C-01 10 102257038 102257038 C T SEC31B Splice_Site p.X664_splice 0.49 TCGA-G2-AA3C-01 10 105063588 105063588 C T PCGF6 3'UTR 0.26 TCGA-G2-AA3C-01 10 112055130 112055130 C G SMNDC1 Missense_Mutation p.M145I 0.26 tolerated(0.44) benign(0.001) TCGA-G2-AA3C-01 10 116207742 116207742 G A ABLIM1 Silent p.I544I 0.14 TCGA-G2-AA3C-01 10 124345897 124345897 C T DMBT1 Missense_Mutation p.S594L 0.19 deleterious(0) unknown(0) TCGA-G2-AA3C-01 10 24889751 24889751 C G ARHGAP21 Missense_Mutation p.E986Q 0.24 deleterious(0.03) probably_damaging(0.992) TCGA-G2-AA3C-01 10 25887586 25887586 G T GPR158 Missense_Mutation p.V1011F 0.14 deleterious(0.01) benign(0.27) TCGA-G2-AA3C-01 10 34626230 34626230 G A PARD3 Nonsense_Mutation p.R848* 0.32 TCGA-G2-AA3C-01 10 50873008 50873008 C T CHAT Silent p.L721L 0.24 TCGA-G2-AA3C-01 10 56077151 56077151 T G PCDH15 Silent p.T252T 0.24 TCGA-G2-AA3C-01 10 69773880 69773881 - T HERC4 Frame_Shift_Ins p.N324Kfs*26 0.17 TCGA-G2-AA3C-01 10 75559931 75559931 G C ZSWIM8 Missense_Mutation p.E1610Q 0.27 tolerated_low_confidence(0.59) benign(0.001) TCGA-G2-AA3C-01 10 86012687 86012687 C G RGR Missense_Mutation p.L149V 0.36 tolerated(0.2) benign(0.074) TCGA-G2-AA3C-01 10 88232494 88232494 G C WAPAL Missense_Mutation p.Q590E 0.19 tolerated(0.53) benign(0.053) TCGA-G2-AA3C-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.31 TCGA-G2-AA3C-01 10 96702006 96702006 C T CYP2C9 Missense_Mutation p.T130M 0.45 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3C-01 11 103908679 103908679 G C DDI1 Missense_Mutation p.D377H 0.27 deleterious(0) possibly_damaging(0.541) TCGA-G2-AA3C-01 11 108203606 108203606 A G ATM Missense_Mutation p.T2636A 0.07 tolerated(0.07) benign(0.001) TCGA-G2-AA3C-01 11 10828424 10828424 G A EIF4G2 Missense_Mutation p.S17L 0.24 tolerated_low_confidence(0.16) benign(0.011) TCGA-G2-AA3C-01 11 1102127 1102127 C T MUC2 Missense_Mutation p.T2588M 0.39 unknown(0) TCGA-G2-AA3C-01 11 114182876 114182876 G C NNMT Missense_Mutation p.D158H 0.33 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 11 118983038 118983038 G A C2CD2L Silent p.L340L 0.30 TCGA-G2-AA3C-01 11 118997669 118997669 G A HINFP Silent p.G5G 0.16 TCGA-G2-AA3C-01 11 123476027 123476027 C T GRAMD1B Intron 0.17 TCGA-G2-AA3C-01 11 1265816 1265816 C T MUC5B Missense_Mutation p.S2569F 0.25 unknown(0) TCGA-G2-AA3C-01 11 1266062 1266062 C G MUC5B Missense_Mutation p.S2651C 0.22 unknown(0) TCGA-G2-AA3C-01 11 129991551 129991551 C G APLP2 Missense_Mutation p.L187V 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-G2-AA3C-01 11 1471053 1471053 T G BRSK2 Missense_Mutation p.L471R 0.24 tolerated(0.07) benign(0.183) TCGA-G2-AA3C-01 11 35339007 35339007 G T SLC1A2 Nonsense_Mutation p.S25* 0.32 TCGA-G2-AA3C-01 11 49178359 49178359 C G FOLH1 Missense_Mutation p.R511S 0.18 tolerated(0.3) benign(0.042) TCGA-G2-AA3C-01 11 55032382 55032382 G A TRIM48 Missense_Mutation p.M17I 0.28 deleterious(0.03) possibly_damaging(0.614) TCGA-G2-AA3C-01 11 62519882 62519882 C T ZBTB3 Missense_Mutation p.E469K 0.25 tolerated(0.08) probably_damaging(0.98) TCGA-G2-AA3C-01 11 6452943 6452943 G A HPX Missense_Mutation p.H353Y 0.30 tolerated_low_confidence(0.44) benign(0.004) TCGA-G2-AA3C-01 11 64680857 64680857 C A ATG2A Nonsense_Mutation p.E203* 0.40 TCGA-G2-AA3C-01 11 68029855 68029855 C G C11orf24 Missense_Mutation p.R203T 0.17 tolerated(0.48) possibly_damaging(0.765) TCGA-G2-AA3C-01 11 68030085 68030085 C G C11orf24 Missense_Mutation p.M126I 0.14 tolerated(0.53) unknown(0) TCGA-G2-AA3C-01 11 6816642 6816642 C T OR6A2 Missense_Mutation p.E100K 0.25 tolerated(0.27) benign(0.071) TCGA-G2-AA3C-01 11 70052578 70052578 G C FADD Nonstop_Mutation p.*209Sext*38 0.24 TCGA-G2-AA3C-01 11 92088254 92088254 C T FAT3 Silent p.I992I 0.25 TCGA-G2-AA3C-01 12 11183532 11183532 C A TAS2R31 Missense_Mutation p.G135W 0.39 deleterious(0.02) probably_damaging(0.91) TCGA-G2-AA3C-01 12 120110194 120110194 G C PRKAB1 Missense_Mutation p.R83P 0.47 deleterious(0) probably_damaging(0.959) TCGA-G2-AA3C-01 12 120150462 120150462 G A CIT Missense_Mutation p.P1540S 0.47 tolerated(0.35) benign(0.018) TCGA-G2-AA3C-01 12 121154517 121154517 C G UNC119B Missense_Mutation p.L149V 0.60 deleterious(0.02) probably_damaging(0.959) TCGA-G2-AA3C-01 12 1291202 1291202 C T ERC1 Silent p.L663L 0.13 TCGA-G2-AA3C-01 12 130919366 130919366 G A RIMBP2 Silent p.D705D 0.22 TCGA-G2-AA3C-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-G2-AA3C-01 12 53899528 53899528 C T TARBP2 Silent p.L279L 0.24 TCGA-G2-AA3C-01 12 58024990 58024990 G A B4GALNT1 Silent p.L126L 0.51 TCGA-G2-AA3C-01 12 68696480 68696480 G C MDM1 Missense_Mutation p.S631C 0.49 deleterious(0.02) possibly_damaging(0.885) TCGA-G2-AA3C-01 12 69107569 69107569 G A NUP107 Missense_Mutation p.R317H 0.25 deleterious(0) probably_damaging(0.977) TCGA-G2-AA3C-01 12 6932879 6932879 C T GPR162 5'UTR 0.56 TCGA-G2-AA3C-01 12 7656320 7656320 C G CD163 5'UTR 0.83 TCGA-G2-AA3C-01 12 88909388 88909388 C G KITLG Missense_Mutation p.R176T 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-G2-AA3C-01 13 107145676 107145676 G A EFNB2 Silent p.F238F 0.21 TCGA-G2-AA3C-01 13 109707928 109707928 C T MYO16 Missense_Mutation p.S1085L 0.16 tolerated(0.06) benign(0.06) TCGA-G2-AA3C-01 13 37427737 37427737 C T SMAD9 Missense_Mutation p.R360Q 0.21 tolerated(0.11) benign(0.341) TCGA-G2-AA3C-01 13 61986122 61986122 G A PCDH20 Nonsense_Mutation p.Q704* 0.39 TCGA-G2-AA3C-01 13 61987165 61987165 G A PCDH20 Missense_Mutation p.T356I 0.34 tolerated(0.2) benign(0.064) TCGA-G2-AA3C-01 14 104026653 104026653 G C BAG5 Silent p.L324L 0.18 TCGA-G2-AA3C-01 14 105175019 105175019 C G INF2 Silent p.L633L 0.28 TCGA-G2-AA3C-01 14 21487891 21487891 G C NDRG2 Missense_Mutation p.S208C 0.30 tolerated(0.05) probably_damaging(0.969) TCGA-G2-AA3C-01 14 24731335 24731335 G T TGM1 Missense_Mutation p.S75Y 0.18 deleterious(0.03) benign(0.121) TCGA-G2-AA3C-01 14 44976237 44976237 G A FSCB 5'UTR 0.41 TCGA-G2-AA3C-01 14 50247423 50247423 G T KLHDC2 Missense_Mutation p.D296Y 0.23 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 14 70924415 70924415 T G ADAM21 Missense_Mutation p.F67V 0.20 deleterious(0.01) benign(0.048) TCGA-G2-AA3C-01 14 75574135 75574135 G C NEK9 Missense_Mutation p.S413C 0.25 tolerated(0.06) benign(0.409) TCGA-G2-AA3C-01 14 81606086 81606086 G C TSHR Silent p.L252L 0.26 TCGA-G2-AA3C-01 14 89202754 89202754 G A EML5 Missense_Mutation p.P335S 0.31 deleterious(0.04) probably_damaging(0.978) TCGA-G2-AA3C-01 14 91247112 91247112 G A TTC7B Missense_Mutation p.R139W 0.22 deleterious(0) possibly_damaging(0.852) TCGA-G2-AA3C-01 14 93263782 93263782 C T GOLGA5 5'UTR 0.30 TCGA-G2-AA3C-01 15 25616039 25616039 C T UBE3A Missense_Mutation p.E431K 0.31 tolerated(0.06) benign(0.17) TCGA-G2-AA3C-01 15 41641365 41641365 G C NUSAP1 Missense_Mutation p.E78Q 0.22 tolerated(0.23) benign(0.078) TCGA-G2-AA3C-01 15 54005008 54005008 A C WDR72 Silent p.T224T 0.31 TCGA-G2-AA3C-01 15 59806568 59806568 A - FAM81A Frame_Shift_Del p.E246Sfs*11 0.19 TCGA-G2-AA3C-01 15 64698559 64698559 C G TRIP4 Missense_Mutation p.S243C 0.20 tolerated(0.06) possibly_damaging(0.469) TCGA-G2-AA3C-01 15 65448139 65448139 C T CLPX Missense_Mutation p.R401Q 0.22 deleterious(0.02) probably_damaging(1) TCGA-G2-AA3C-01 15 65448152 65448152 C G CLPX Missense_Mutation p.E397Q 0.22 deleterious(0.04) probably_damaging(0.919) TCGA-G2-AA3C-01 15 89873435 89873435 G A POLG Silent p.L244L 0.32 TCGA-G2-AA3C-01 16 1417162 1417162 G T UNKL Intron 0.17 TCGA-G2-AA3C-01 16 15110020 15110020 G C PDXDC1 Silent p.G254G 0.13 TCGA-G2-AA3C-01 16 18544416 18544416 G C NOMO2 Missense_Mutation p.Q436E 0.27 tolerated(0.63) benign(0.001) TCGA-G2-AA3C-01 16 29997779 29997779 G A TAOK2 Missense_Mutation p.R729Q 0.16 tolerated(0.07) benign(0.053) TCGA-G2-AA3C-01 16 3077664 3077664 G A THOC6 3'UTR 0.40 TCGA-G2-AA3C-01 16 31087979 31087979 G T ZNF646 Nonsense_Mutation p.E112* 0.31 TCGA-G2-AA3C-01 16 3304195 3304195 C T MEFV Silent p.L291L 0.25 TCGA-G2-AA3C-01 16 46950614 46950614 G C GPT2 Missense_Mutation p.D299H 0.28 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 16 55364237 55364237 G A IRX6 3'UTR 0.29 TCGA-G2-AA3C-01 16 56485522 56485522 G A OGFOD1 5'UTR 0.19 TCGA-G2-AA3C-01 16 56977336 56977336 G A HERPUD1 3'UTR 0.24 TCGA-G2-AA3C-01 16 66969599 66969599 C G CES2 Missense_Mutation p.L85V 0.26 tolerated(0.09) benign(0.105) TCGA-G2-AA3C-01 16 67036992 67036992 C T CES4A Missense_Mutation p.S237L 0.20 deleterious(0) benign(0.049) TCGA-G2-AA3C-01 16 72110699 72110699 G A HPR Missense_Mutation p.E256K 0.26 deleterious(0.02) probably_damaging(0.925) TCGA-G2-AA3C-01 16 74372722 74372722 G A RP11-252A24.2 RNA 0.31 TCGA-G2-AA3C-01 16 77327147 77327147 C A ADAMTS18 Missense_Mutation p.K1005N 0.14 deleterious(0.03) possibly_damaging(0.889) TCGA-G2-AA3C-01 16 841361 841361 G A CHTF18 Silent p.P365P 0.27 TCGA-G2-AA3C-01 17 10532961 10532961 G C MYH3 Missense_Mutation p.Q1917E 0.26 deleterious(0) probably_damaging(0.959) TCGA-G2-AA3C-01 17 10533033 10533033 G A MYH3 Missense_Mutation p.H1893Y 0.31 tolerated(0.35) benign(0.224) TCGA-G2-AA3C-01 17 11774978 11774978 G A DNAH9 Missense_Mutation p.E3373K 0.26 benign(0.057) TCGA-G2-AA3C-01 17 18967338 18967338 C T SNORD3B-2 RNA 0.12 TCGA-G2-AA3C-01 17 26817481 26817481 G A SLC13A2 Missense_Mutation p.E130K 0.29 deleterious(0) possibly_damaging(0.907) TCGA-G2-AA3C-01 17 27959440 27959440 C T SSH2 Silent p.K897K 0.27 TCGA-G2-AA3C-01 17 34958995 34958995 C G MRM1 Missense_Mutation p.P186A 0.16 tolerated(0.12) probably_damaging(0.968) TCGA-G2-AA3C-01 17 37871714 37871714 C T ERBB2 Missense_Mutation p.S413L 0.23 deleterious(0.01) possibly_damaging(0.448) TCGA-G2-AA3C-01 17 39041282 39041282 C T KRT20 Silent p.T52T 0.23 TCGA-G2-AA3C-01 17 39594463 39594463 C T KRT38 Missense_Mutation p.E375K 0.20 deleterious(0.03) benign(0.39) TCGA-G2-AA3C-01 17 41958144 41958144 C G MPP2 Silent p.L355L 0.27 TCGA-G2-AA3C-01 17 46674007 46674007 C T HOXB6 Missense_Mutation p.R148Q 0.22 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 17 49343619 49343619 C G UTP18 Missense_Mutation p.L178V 0.19 deleterious(0.04) possibly_damaging(0.831) TCGA-G2-AA3C-01 17 5038544 5038544 C G USP6 Missense_Mutation p.F170L 0.31 tolerated_low_confidence(0.14) benign(0.418) TCGA-G2-AA3C-01 17 58469336 58469336 G C USP32 5'UTR 0.32 TCGA-G2-AA3C-01 17 60768106 60768106 G T MRC2 Missense_Mutation p.M1332I 0.25 tolerated(0.57) benign(0.241) TCGA-G2-AA3C-01 17 65907246 65907246 C G BPTF Missense_Mutation p.I1082M 0.32 benign(0.011) TCGA-G2-AA3C-01 17 65907711 65907711 C T BPTF Silent p.L1237L 0.27 TCGA-G2-AA3C-01 17 65908616 65908616 C T BPTF Missense_Mutation p.S1539L 0.24 benign(0.008) TCGA-G2-AA3C-01 17 7222458 7222458 C G NEURL4 Missense_Mutation p.E1199Q 0.16 tolerated(0.14) benign(0.01) TCGA-G2-AA3C-01 17 73570954 73570954 G C LLGL2 Missense_Mutation p.E1020Q 0.31 deleterious_low_confidence(0.02) benign(0.1) TCGA-G2-AA3C-01 17 7751553 7751553 G A KDM6B Silent p.L649L 0.28 TCGA-G2-AA3C-01 17 7827544 7827544 G C KCNAB3 Missense_Mutation p.P251A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3C-01 17 8110660 8110660 C G AURKB Missense_Mutation p.E78Q 0.33 deleterious(0.01) possibly_damaging(0.853) TCGA-G2-AA3C-01 17 8702264 8702264 C A MFSD6L Missense_Mutation p.A59S 0.12 tolerated(0.4) benign(0.344) TCGA-G2-AA3C-01 18 22057544 22057544 C A HRH4 3'UTR 0.30 TCGA-G2-AA3C-01 18 43464725 43464725 G A EPG5 Silent p.L1721L 0.18 TCGA-G2-AA3C-01 18 44560006 44560006 G A TCEB3B Missense_Mutation p.L544F 0.22 deleterious(0.01) benign(0.439) TCGA-G2-AA3C-01 18 580651 580651 G A CETN1 Silent p.T81T 0.18 TCGA-G2-AA3C-01 18 7024440 7024440 C A LAMA1 Missense_Mutation p.D810Y 0.10 deleterious(0.03) benign(0.103) TCGA-G2-AA3C-01 18 77894266 77894266 C A ADNP2 Missense_Mutation p.P324T 0.05 deleterious(0.01) possibly_damaging(0.447) TCGA-G2-AA3C-01 19 10092753 10092753 C G COL5A3 Missense_Mutation p.E816D 0.38 unknown(0) TCGA-G2-AA3C-01 19 1632106 1632106 C T TCF3 Missense_Mutation p.E77K 0.53 deleterious(0.01) benign(0.194) TCGA-G2-AA3C-01 19 2073259 2073259 C T MOB3A 3'UTR 0.06 TCGA-G2-AA3C-01 19 36120515 36120515 G C RBM42 Silent p.A74A 0.25 TCGA-G2-AA3C-01 19 36370101 36370101 C A APLP1 Silent p.I613I 0.18 TCGA-G2-AA3C-01 19 43259417 43259417 C T PSG8 Silent p.P237P 0.21 TCGA-G2-AA3C-01 19 46838173 46838173 G C HIF3A Silent p.L614L 0.25 TCGA-G2-AA3C-01 19 47998879 47998879 G A NAPA Intron 0.24 TCGA-G2-AA3C-01 19 52250199 52250199 C T FPR1 Missense_Mutation p.A17T 0.20 tolerated(0.38) benign(0.005) TCGA-G2-AA3C-01 19 53270087 53270087 C T ZNF600 Missense_Mutation p.D308N 0.29 deleterious(0.01) possibly_damaging(0.782) TCGA-G2-AA3C-01 1 10715784 10715784 G A CASZ1 Silent p.F529F 0.32 TCGA-G2-AA3C-01 1 110019512 110019512 C G SYPL2 Missense_Mutation p.I123M 0.32 deleterious(0) possibly_damaging(0.837) TCGA-G2-AA3C-01 1 110134835 110134835 A C GNAI3 Missense_Mutation p.K349Q 0.21 tolerated(0.05) benign(0.261) TCGA-G2-AA3C-01 1 115151390 115151390 C G DENND2C Missense_Mutation p.E492Q 0.22 tolerated(0.1) possibly_damaging(0.874) TCGA-G2-AA3C-01 1 13669148 13669148 C T PRAMEF14 Silent p.L394L 0.24 TCGA-G2-AA3C-01 1 151259780 151259780 C G ZNF687 Missense_Mutation p.S338C 0.21 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3C-01 1 153012576 153012576 C G SPRR2D 3'UTR 0.28 TCGA-G2-AA3C-01 1 158152903 158152903 G A CD1D Silent p.V281V 0.13 TCGA-G2-AA3C-01 1 171292305 171292305 G C FMO4 Missense_Mutation p.D99H 0.28 tolerated(0.08) probably_damaging(0.926) TCGA-G2-AA3C-01 1 174200309 174200309 C G RABGAP1L Missense_Mutation p.P120A 0.22 tolerated(0.11) benign(0.065) TCGA-G2-AA3C-01 1 207642049 207642049 C T CR2 Missense_Mutation p.P208L 0.26 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3C-01 1 22150909 22150909 G A LDLRAD2 3'UTR 0.25 TCGA-G2-AA3C-01 1 230907841 230907841 G C CAPN9 Missense_Mutation p.D291H 0.20 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3C-01 1 247979006 247979006 T G OR14A16 Missense_Mutation p.E9A 0.08 tolerated(0.05) benign(0.41) TCGA-G2-AA3C-01 1 2523445 2523445 C G MMEL1 Missense_Mutation p.E697Q 0.37 tolerated(0.28) benign(0.042) TCGA-G2-AA3C-01 1 28819542 28819542 G C PHACTR4 Missense_Mutation p.E688Q 0.26 deleterious(0) probably_damaging(0.94) TCGA-G2-AA3C-01 1 34038271 34038271 C A CSMD2 Nonsense_Mutation p.E2535* 0.30 TCGA-G2-AA3C-01 1 36824375 36824375 G A STK40 Missense_Mutation p.A54V 0.32 deleterious(0.04) probably_damaging(0.94) TCGA-G2-AA3C-01 1 43778032 43778032 C T TIE1 Nonsense_Mutation p.R563* 0.35 TCGA-G2-AA3C-01 1 55223755 55223755 A G PARS2 Silent p.C360C 0.18 TCGA-G2-AA3C-01 1 62550201 62550201 C G INADL Missense_Mutation p.P1420A 0.23 deleterious(0.03) benign(0.033) TCGA-G2-AA3C-01 1 77672364 77672364 G C PIGK Missense_Mutation p.S67C 0.26 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 1 9098069 9098069 G A SLC2A5 Silent p.L397L 0.15 TCGA-G2-AA3C-01 20 1903022 1903022 G C SIRPA Missense_Mutation p.C273S 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-G2-AA3C-01 20 44571828 44571828 G A PCIF1 Missense_Mutation p.E256K 0.27 tolerated(0.67) benign(0.218) TCGA-G2-AA3C-01 20 46288163 46288163 C T SULF2 Silent p.K854K 0.19 TCGA-G2-AA3C-01 20 49575798 49575798 C T MOCS3 Missense_Mutation p.S140L 0.25 deleterious(0) probably_damaging(0.95) TCGA-G2-AA3C-01 20 49575810 49575810 C T MOCS3 Missense_Mutation p.S144L 0.25 tolerated(0.08) benign(0.059) TCGA-G2-AA3C-01 20 49575823 49575823 C G MOCS3 Silent p.L148L 0.24 TCGA-G2-AA3C-01 20 57828952 57828952 G T ZNF831 Splice_Site p.X1397_splice 0.18 TCGA-G2-AA3C-01 20 58450465 58450465 G A SYCP2 Silent p.V1070V 0.23 TCGA-G2-AA3C-01 20 5897483 5897483 C T CHGB Silent p.C36C 0.24 TCGA-G2-AA3C-01 20 61981864 61981864 G A CHRNA4 Missense_Mutation p.S300L 0.25 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 21 37445200 37445200 C G CBR1 3'UTR 0.33 TCGA-G2-AA3C-01 22 19222104 19222104 C T CLTCL1 Silent p.V365V 0.35 TCGA-G2-AA3C-01 22 25263120 25263120 C A SGSM1 Missense_Mutation p.H329Q 0.16 deleterious(0) probably_damaging(0.943) TCGA-G2-AA3C-01 22 25753264 25753264 T - LRP5L Frame_Shift_Del p.K134Sfs*26 0.17 TCGA-G2-AA3C-01 22 50987715 50987715 G A KLHDC7B Missense_Mutation p.E374K 0.26 tolerated(0.56) benign(0.031) TCGA-G2-AA3C-01 2 100623271 100623271 G A AFF3 Silent p.T257T 0.24 TCGA-G2-AA3C-01 2 119739978 119739978 G C MARCO Missense_Mutation p.G352A 0.29 deleterious(0) unknown(0) TCGA-G2-AA3C-01 2 128707492 128707492 C T SAP130 Nonsense_Mutation p.W942* 0.37 TCGA-G2-AA3C-01 2 131520651 131520651 G C AMER3 Missense_Mutation p.D336H 0.34 deleterious(0) probably_damaging(0.963) TCGA-G2-AA3C-01 2 138169238 138169238 G A THSD7B Missense_Mutation p.E919K 0.22 deleterious(0.04) possibly_damaging(0.486) TCGA-G2-AA3C-01 2 164466660 164466660 C G FIGN Missense_Mutation p.G561A 0.10 tolerated(0.88) benign(0.006) TCGA-G2-AA3C-01 2 170063720 170063720 C T LRP2 Silent p.L2170L 0.33 TCGA-G2-AA3C-01 2 178098803 178098803 C G NFE2L2 Missense_Mutation p.G81A 0.23 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 2 178482219 178482219 C G TTC30A Missense_Mutation p.R404T 0.26 tolerated(0.28) benign(0.082) TCGA-G2-AA3C-01 2 180634384 180634384 G A ZNF385B Silent p.F33F 0.26 TCGA-G2-AA3C-01 2 197183745 197183745 C T HECW2 Silent p.E623E 0.18 TCGA-G2-AA3C-01 2 219617602 219617602 C G TTLL4 Missense_Mutation p.I1031M 0.32 tolerated(0.06) benign(0.017) TCGA-G2-AA3C-01 2 219736319 219736319 C T WNT6 Silent p.R138R 0.45 TCGA-G2-AA3C-01 2 220091615 220091615 A C ATG9A Missense_Mutation p.L63R 0.16 deleterious(0) possibly_damaging(0.899) TCGA-G2-AA3C-01 2 220091616 220091616 G T ATG9A Missense_Mutation p.L63I 0.15 tolerated(0.16) benign(0.387) TCGA-G2-AA3C-01 2 227964339 227964339 T A COL4A4 Nonsense_Mutation p.K366* 0.24 TCGA-G2-AA3C-01 2 233245422 233245422 C T ALPP Missense_Mutation p.R319C 0.12 deleterious(0.01) benign(0.089) TCGA-G2-AA3C-01 2 233633216 233633216 C T KCNJ13 Silent p.L256L 0.27 TCGA-G2-AA3C-01 2 233660872 233660872 C A GIGYF2 Missense_Mutation p.P548Q 0.20 possibly_damaging(0.574) TCGA-G2-AA3C-01 2 233660928 233660928 C T GIGYF2 Nonsense_Mutation p.Q567* 0.23 TCGA-G2-AA3C-01 2 235943656 235943656 C G SH3BP4 Missense_Mutation p.Q4E 0.22 deleterious_low_confidence(0.02) benign(0.146) TCGA-G2-AA3C-01 2 235943715 235943715 G C SH3BP4 Silent p.L23L 0.17 TCGA-G2-AA3C-01 2 242756193 242756193 C T NEU4 Silent p.F115F 0.24 TCGA-G2-AA3C-01 2 24469068 24469068 G C ITSN2 Missense_Mutation p.I1169M 0.28 deleterious(0.01) unknown(0) TCGA-G2-AA3C-01 2 24929500 24929500 T A NCOA1 Missense_Mutation p.N387K 0.15 deleterious(0.05) benign(0.206) TCGA-G2-AA3C-01 2 25194756 25194756 C T DNAJC27 Silent p.P6P 0.40 TCGA-G2-AA3C-01 2 3596672 3596672 C G RNASEH1 Missense_Mutation p.Q180H 0.26 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 2 37475520 37475520 C T NDUFAF7 3'UTR 0.40 TCGA-G2-AA3C-01 2 43010467 43010467 G A HAAO Silent p.L113L 0.20 TCGA-G2-AA3C-01 2 64112808 64112808 C A UGP2 Missense_Mutation p.P221T 0.25 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 2 73717298 73717298 G A ALMS1 Missense_Mutation p.E2737K 0.25 probably_damaging(0.98) TCGA-G2-AA3C-01 2 73717690 73717690 G C ALMS1 Missense_Mutation p.K2867N 0.26 possibly_damaging(0.785) TCGA-G2-AA3C-01 2 74329093 74329093 G A TET3 Silent p.E1591E 0.39 TCGA-G2-AA3C-01 2 80773034 80773034 C T CTNNA2 Silent p.V462V 0.19 TCGA-G2-AA3C-01 2 89442228 89442228 C T IGKV3-20 Silent p.Q59Q 0.23 TCGA-G2-AA3C-01 2 9519151 9519151 C G ASAP2 Silent p.L637L 0.11 TCGA-G2-AA3C-01 3 100413884 100413884 C G GPR128 3'UTR 0.31 TCGA-G2-AA3C-01 3 101484135 101484135 C G CEP97 Missense_Mutation p.Q780E 0.31 tolerated(0.13) benign(0.13) TCGA-G2-AA3C-01 3 10400480 10400480 G A ATP2B2 Silent p.R677R 0.27 TCGA-G2-AA3C-01 3 122631736 122631736 C T SEMA5B Silent p.V947V 0.33 TCGA-G2-AA3C-01 3 128627063 128627063 G A ACAD9 Silent p.L438L 0.25 TCGA-G2-AA3C-01 3 132244484 132244484 A G DNAJC13 Missense_Mutation p.T2031A 0.30 tolerated(0.53) benign(0) TCGA-G2-AA3C-01 3 151105698 151105698 G A MED12L Missense_Mutation p.R1695Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3C-01 3 155232569 155232569 G A PLCH1 Silent p.F513F 0.37 TCGA-G2-AA3C-01 3 178938778 178938778 G C PIK3CA Missense_Mutation p.E674Q 0.12 deleterious(0.01) possibly_damaging(0.853) TCGA-G2-AA3C-01 3 178938789 178938789 T C PIK3CA Silent p.N677N 0.14 TCGA-G2-AA3C-01 3 25470146 25470146 G C RARB 5'UTR 0.23 TCGA-G2-AA3C-01 3 25670549 25670549 C G TOP2B Missense_Mutation p.E588Q 0.31 deleterious(0.03) benign(0.2) TCGA-G2-AA3C-01 3 32611862 32611862 C T DYNC1LI1 Missense_Mutation p.A66T 0.29 tolerated(0.17) benign(0.042) TCGA-G2-AA3C-01 3 42704594 42704594 C T ZBTB47 Missense_Mutation p.S571L 0.27 deleterious(0) unknown(0) TCGA-G2-AA3C-01 3 47467632 47467632 C T SCAP Silent p.L255L 0.26 TCGA-G2-AA3C-01 3 50222076 50222076 G A SEMA3F Missense_Mutation p.D429N 0.26 deleterious(0) probably_damaging(0.99) TCGA-G2-AA3C-01 3 50330127 50330127 G C IFRD2 5'Flank 0.34 TCGA-G2-AA3C-01 3 57303794 57303794 G A APPL1 3'UTR 0.17 TCGA-G2-AA3C-01 4 100844276 100844276 C G DNAJB14 Missense_Mutation p.L124F 0.10 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 4 103867859 103867859 C G SLC9B1 Missense_Mutation p.R157T 0.28 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 4 104065643 104065643 C G CENPE Missense_Mutation p.E1664Q 0.18 possibly_damaging(0.806) TCGA-G2-AA3C-01 4 104065673 104065673 C G CENPE Missense_Mutation p.E1654Q 0.19 probably_damaging(0.983) TCGA-G2-AA3C-01 4 104065769 104065769 C T CENPE Missense_Mutation p.E1622K 0.12 benign(0.196) TCGA-G2-AA3C-01 4 110442627 110442627 G C SEC24B Missense_Mutation p.E785Q 0.27 tolerated(0.05) probably_damaging(1) TCGA-G2-AA3C-01 4 141489062 141489062 C T UCP1 Missense_Mutation p.V66I 0.16 tolerated(0.16) benign(0.002) TCGA-G2-AA3C-01 4 164246775 164246775 G C NPY1R Missense_Mutation p.L279V 0.25 deleterious(0) probably_damaging(0.988) TCGA-G2-AA3C-01 4 164247289 164247289 G A NPY1R Nonsense_Mutation p.Q140* 0.25 TCGA-G2-AA3C-01 4 177114113 177114113 G C SPATA4 Missense_Mutation p.R155G 0.21 deleterious(0.05) possibly_damaging(0.887) TCGA-G2-AA3C-01 4 2877838 2877838 G A ADD1 Splice_Site p.X65_splice 0.13 TCGA-G2-AA3C-01 4 48597671 48597671 C T FRYL Missense_Mutation p.R395Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3C-01 4 77102213 77102213 C T SCARB2 Missense_Mutation p.G106E 0.17 deleterious(0.04) possibly_damaging(0.742) TCGA-G2-AA3C-01 4 79428682 79428682 C T FRAS1 Missense_Mutation p.L3142F 0.20 possibly_damaging(0.608) TCGA-G2-AA3C-01 4 86938503 86938503 C T MAPK10 Missense_Mutation p.E425K 0.24 tolerated_low_confidence(0.14) benign(0.017) TCGA-G2-AA3C-01 4 89345855 89345855 G C HERC6 Splice_Site p.X645_splice 0.35 TCGA-G2-AA3C-01 5 115822486 115822486 C - SEMA6A Frame_Shift_Del p.R308Vfs*68 0.19 TCGA-G2-AA3C-01 5 120022301 120022301 A T PRR16 Missense_Mutation p.H248L 0.21 tolerated_low_confidence(0.22) benign(0.117) TCGA-G2-AA3C-01 5 138145756 138145756 T C CTNNA1 Missense_Mutation p.F111L 0.22 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 5 140215583 140215583 G A PCDHA7 Missense_Mutation p.D539N 0.28 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-G2-AA3C-01 5 140216197 140216197 C T PCDHA7 Silent p.S743S 0.27 TCGA-G2-AA3C-01 5 140235895 140235895 C G PCDHA10 Missense_Mutation p.R88G 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-G2-AA3C-01 5 140754643 140754643 G T PCDHGA6 Silent p.A331A 0.28 TCGA-G2-AA3C-01 5 153433176 153433176 C G MFAP3 Missense_Mutation p.S331C 0.32 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3C-01 5 16067687 16067687 G T MARCH11 Missense_Mutation p.Q368K 0.34 tolerated(0.06) benign(0.085) TCGA-G2-AA3C-01 5 195420 195420 C G LRRC14B Missense_Mutation p.F499L 0.19 tolerated(0.06) benign(0.255) TCGA-G2-AA3C-01 5 21765208 21765208 C G CDH12 Missense_Mutation p.S465T 0.27 tolerated(0.07) benign(0.051) TCGA-G2-AA3C-01 5 32274094 32274094 C G MTMR12 Missense_Mutation p.D93H 0.32 tolerated(0.2) benign(0.005) TCGA-G2-AA3C-01 5 37816090 37816090 G C GDNF Missense_Mutation p.P117R 0.26 tolerated(0.66) benign(0.002) TCGA-G2-AA3C-01 5 41069843 41069843 C T MROH2B Missense_Mutation p.D14N 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.678) TCGA-G2-AA3C-01 5 43656905 43656905 C G NNT Missense_Mutation p.S815C 0.32 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 5 78411646 78411646 C G BHMT Silent p.V30V 0.25 TCGA-G2-AA3C-01 5 82816165 82816165 G C VCAN Missense_Mutation p.M680I 0.31 tolerated(0.38) benign(0.071) TCGA-G2-AA3C-01 5 88018673 88018673 G C MEF2C Missense_Mutation p.I400M 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3C-01 5 95224450 95224450 C G ELL2 3'UTR 0.36 TCGA-G2-AA3C-01 6 101246631 101246631 G A ASCC3 Silent p.L451L 0.30 TCGA-G2-AA3C-01 6 112575311 112575311 C T LAMA4 Nonsense_Mutation p.W14* 0.19 TCGA-G2-AA3C-01 6 1313296 1313297 - CC FOXQ1 Frame_Shift_Ins p.Y122Pfs*20 0.46 TCGA-G2-AA3C-01 6 142741077 142741077 G A GPR126 Missense_Mutation p.G1052D 0.30 deleterious(0) probably_damaging(0.968) TCGA-G2-AA3C-01 6 30539269 30539269 C T ABCF1 Missense_Mutation p.P2L 0.38 deleterious_low_confidence(0) unknown(0) TCGA-G2-AA3C-01 6 33143401 33143401 G A COL11A2 Missense_Mutation p.R690C 0.70 possibly_damaging(0.835) TCGA-G2-AA3C-01 6 34838659 34838659 G A UHRF1BP1 Silent p.L1249L 0.64 TCGA-G2-AA3C-01 6 43307849 43307849 G C ZNF318 Missense_Mutation p.S1296C 0.28 possibly_damaging(0.632) TCGA-G2-AA3C-01 6 47754368 47754368 C T OPN5 Missense_Mutation p.S83L 0.29 deleterious(0.03) benign(0.199) TCGA-G2-AA3C-01 6 50011360 50011360 C T DEFB112 Silent p.T90T 0.26 TCGA-G2-AA3C-01 6 53989564 53989564 C T MLIP Silent p.V171V 0.29 TCGA-G2-AA3C-01 6 56857329 56857329 C T BEND6 Nonsense_Mutation p.R92* 0.24 TCGA-G2-AA3C-01 6 76023321 76023321 G A FILIP1 Nonsense_Mutation p.Q743* 0.24 TCGA-G2-AA3C-01 6 76023330 76023330 G C FILIP1 Missense_Mutation p.Q740E 0.27 tolerated(0.12) possibly_damaging(0.556) TCGA-G2-AA3C-01 6 76024129 76024129 G C FILIP1 Silent p.V473V 0.31 TCGA-G2-AA3C-01 6 88853982 88853982 C G CNR1 Missense_Mutation p.D338H 0.19 deleterious(0) probably_damaging(1) TCGA-G2-AA3C-01 7 100487734 100487734 C T ACHE 3'UTR 0.30 TCGA-G2-AA3C-01 7 124386513 124386513 G A GPR37 3'UTR 0.14 TCGA-G2-AA3C-01 7 127252026 127252026 C T PAX4 Silent p.R240R 0.35 TCGA-G2-AA3C-01 7 141464276 141464276 C G TAS2R3 Silent p.L106L 0.22 TCGA-G2-AA3C-01 7 141464315 141464315 C T TAS2R3 Silent p.F119F 0.21 TCGA-G2-AA3C-01 7 141765194 141765194 C G MGAM Missense_Mutation p.S1515C 0.38 deleterious(0) probably_damaging(0.982) TCGA-G2-AA3C-01 7 144060705 144060705 C T ARHGEF5 Nonsense_Mutation p.Q315* 0.15 TCGA-G2-AA3C-01 7 144060775 144060775 C A ARHGEF5 Missense_Mutation p.A338E 0.15 deleterious(0) benign(0.033) TCGA-G2-AA3C-01 7 150417432 150417432 G A GIMAP1 Missense_Mutation p.A114T 0.22 deleterious(0.01) benign(0.365) TCGA-G2-AA3C-01 7 20449708 20449708 A C ITGB8 3'UTR 0.21 TCGA-G2-AA3C-01 7 27222290 27222290 C G HOXA11 3'UTR 0.36 TCGA-G2-AA3C-01 7 4014178 4014178 G T SDK1 Splice_Site p.X665_splice 0.41 TCGA-G2-AA3C-01 7 42017268 42017268 C G GLI3 Missense_Mutation p.L567F 0.27 deleterious(0) probably_damaging(0.962) TCGA-G2-AA3C-01 8 100587894 100587894 G A VPS13B Missense_Mutation p.R1678Q 0.30 tolerated(0.16) possibly_damaging(0.885) TCGA-G2-AA3C-01 8 113812420 113812420 C T CSMD3 Missense_Mutation p.G648E 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-G2-AA3C-01 8 124515588 124515588 C T FBXO32 3'UTR 0.26 TCGA-G2-AA3C-01 8 143993986 143993986 C T CYP11B2 Missense_Mutation p.R453Q 0.26 deleterious(0) probably_damaging(0.955) TCGA-G2-AA3C-01 8 143994029 143994029 G A CYP11B2 Missense_Mutation p.H439Y 0.24 tolerated(0.11) benign(0.003) TCGA-G2-AA3C-01 8 144990867 144990867 C A PLEC Silent p.L4511L 0.28 TCGA-G2-AA3C-01 8 59750746 59750746 C T TOX Missense_Mutation p.R273H 0.24 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3C-01 8 68658296 68658296 C T CPA6 Silent p.K23K 0.15 TCGA-G2-AA3C-01 8 71520557 71520557 G C TRAM1 5'UTR 0.30 TCGA-G2-AA3C-01 8 71520572 71520572 C A TRAM1 5'UTR 0.29 TCGA-G2-AA3C-01 8 75927101 75927101 C A CRISPLD1 Nonsense_Mutation p.C227* 0.32 TCGA-G2-AA3C-01 8 77616666 77616666 G A ZFHX4 Missense_Mutation p.E115K 0.18 possibly_damaging(0.502) TCGA-G2-AA3C-01 8 95680448 95680448 C G ESRP1 Silent p.L401L 0.34 TCGA-G2-AA3C-01 9 112898529 112898529 G T PALM2-AKAP2 Missense_Mutation p.E235D 0.04 deleterious(0.05) possibly_damaging(0.749) TCGA-G2-AA3C-01 9 112969749 112969749 G C C9orf152 Silent p.L37L 0.69 TCGA-G2-AA3C-01 9 114886595 114886595 C A SUSD1 Missense_Mutation p.K276N 0.54 tolerated(0.44) possibly_damaging(0.902) TCGA-G2-AA3C-01 9 117124723 117124723 C T AKNA Missense_Mutation p.G627S 0.56 tolerated(0.31) benign(0.01) TCGA-G2-AA3C-01 9 117852870 117852870 C T TNC Missense_Mutation p.G143E 0.52 tolerated(0.31) probably_damaging(0.991) TCGA-G2-AA3C-01 9 13121914 13121914 C G MPDZ Missense_Mutation p.L1685F 0.56 deleterious(0.01) probably_damaging(1) TCGA-G2-AA3C-01 9 139912329 139912329 C G ABCA2 Missense_Mutation p.M707I 0.66 tolerated(0.73) benign(0.041) TCGA-G2-AA3C-01 9 32489410 32489410 C T DDX58 Missense_Mutation p.R244K 0.53 deleterious(0.01) probably_damaging(0.945) TCGA-G2-AA3C-01 9 4286390 4286390 C A GLIS3 Silent p.R12R 0.67 TCGA-G2-AA3C-01 9 85619467 85619467 G C RASEF Missense_Mutation p.S383C 0.53 deleterious(0.03) benign(0.006) TCGA-G2-AA3C-01 X 100275518 100275518 C G TRMT2B Missense_Mutation p.E376Q 0.54 tolerated(0.57) benign(0.285) TCGA-G2-AA3C-01 X 100532614 100532614 T C TAF7L Missense_Mutation p.K310R 0.53 tolerated(0.11) benign(0.007) TCGA-G2-AA3C-01 X 107977556 107977556 C A IRS4 Silent p.V673V 0.57 TCGA-G2-AA3C-01 X 12734895 12734895 C T FRMPD4 Silent p.L773L 0.52 TCGA-G2-AA3C-01 X 135825836 135825836 G A ARHGEF6 Missense_Mutation p.T190I 0.52 deleterious(0.01) possibly_damaging(0.461) TCGA-G2-AA3C-01 X 144905563 144905563 G C SLITRK2 Silent p.L540L 0.54 TCGA-G2-AA3C-01 X 144909203 144909203 C T TMEM257 Missense_Mutation p.S3F 0.44 tolerated_low_confidence(0.14) possibly_damaging(0.683) TCGA-G2-AA3C-01 X 151303838 151303838 C G MAGEA10 Missense_Mutation p.Q85H 0.64 deleterious(0) benign(0.366) TCGA-G2-AA3C-01 X 153070295 153070295 C A PDZD4 Nonsense_Mutation p.E275* 0.41 TCGA-G2-AA3C-01 X 21581437 21581437 C A CNKSR2 Missense_Mutation p.T492K 0.44 tolerated(0.09) benign(0.049) TCGA-G2-AA3C-01 X 44938449 44938450 - GT KDM6A Frame_Shift_Ins p.R1001* 0.33 TCGA-G2-AA3C-01 X 46359693 46359693 C T ZNF674 Missense_Mutation p.R444K 0.60 tolerated(0.3) benign(0.022) TCGA-G2-AA3C-01 X 51486810 51486810 G T GSPT2 Missense_Mutation p.D30Y 0.53 deleterious_low_confidence(0.01) benign(0.229) TCGA-G2-AA3C-01 X 70643024 70643024 G A TAF1 Missense_Mutation p.D1524N 0.44 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3C-01 X 73040809 73040809 G A XIST RNA 0.39 TCGA-G2-AA3C-01 X 96171543 96171543 C T DIAPH2 Missense_Mutation p.S280F 0.60 deleterious(0) unknown(0) TCGA-G2-AA3D-01 10 100183528 100183528 T C HPS1 Missense_Mutation p.Q505R 0.13 tolerated(1) benign(0.011) TCGA-G2-AA3D-01 10 101124711 101124711 G C CNNM1 Splice_Site p.X710_splice 0.09 TCGA-G2-AA3D-01 10 104121517 104121517 C G GBF1 Missense_Mutation p.P511A 0.13 tolerated(0.15) benign(0.411) TCGA-G2-AA3D-01 10 106125647 106125647 C G CCDC147 Missense_Mutation p.L225V 0.10 tolerated(0.23) benign(0.182) TCGA-G2-AA3D-01 10 1088574 1088574 C T IDI1 Missense_Mutation p.E179K 0.07 deleterious(0) benign(0.138) TCGA-G2-AA3D-01 10 115905457 115905457 C T C10orf118 Missense_Mutation p.G318S 0.25 tolerated(0.39) possibly_damaging(0.82) TCGA-G2-AA3D-01 10 123276936 123276936 G C FGFR2 Intron 0.22 TCGA-G2-AA3D-01 10 17171735 17171735 C G CUBN Missense_Mutation p.W10C 0.16 deleterious(0.03) possibly_damaging(0.536) TCGA-G2-AA3D-01 10 30336512 30336512 C T KIAA1462 Missense_Mutation p.R77K 0.06 tolerated(0.1) possibly_damaging(0.892) TCGA-G2-AA3D-01 10 88939934 88939934 C G FAM35A Missense_Mutation p.S689C 0.04 deleterious(0) possibly_damaging(0.794) TCGA-G2-AA3D-01 10 89692918 89692918 G C PTEN Missense_Mutation p.M134I 0.07 deleterious(0) possibly_damaging(0.824) TCGA-G2-AA3D-01 10 96117853 96117853 C G NOC3L Missense_Mutation p.D113H 0.18 tolerated(0.08) possibly_damaging(0.86) TCGA-G2-AA3D-01 10 97099039 97099039 C T SORBS1 Missense_Mutation p.E906K 0.07 deleterious(0) probably_damaging(0.994) TCGA-G2-AA3D-01 11 102647047 102647047 C G MMP10 Missense_Mutation p.S299T 0.05 tolerated(1) benign(0.032) TCGA-G2-AA3D-01 11 105924564 105924564 G C KBTBD3 Silent p.L284L 0.09 TCGA-G2-AA3D-01 11 107427527 107427527 T C ALKBH8 Missense_Mutation p.Q111R 0.19 tolerated(0.1) benign(0.334) TCGA-G2-AA3D-01 11 108031952 108031952 G A NPAT Silent p.I1287I 0.12 TCGA-G2-AA3D-01 11 10825118 10825118 C G EIF4G2 Missense_Mutation p.R241T 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-G2-AA3D-01 11 118965921 118965921 C T H2AFX Missense_Mutation p.E62K 0.04 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-G2-AA3D-01 11 11972017 11972017 G T USP47 Nonsense_Mutation p.E1123* 0.16 TCGA-G2-AA3D-01 11 120082120 120082120 G A OAF Missense_Mutation p.E45K 0.21 tolerated(0.05) benign(0.418) TCGA-G2-AA3D-01 11 130069861 130069861 C G ST14 Nonsense_Mutation p.S608* 0.05 TCGA-G2-AA3D-01 11 19256036 19256036 T - E2F8 Frame_Shift_Del p.R267Gfs*2 0.36 TCGA-G2-AA3D-01 11 62291505 62291505 C G AHNAK Missense_Mutation p.D3462H 0.16 probably_damaging(0.999) TCGA-G2-AA3D-01 11 64537446 64537446 T A SF1 Missense_Mutation p.I282F 0.40 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3D-01 11 64537455 64537455 C T SF1 Missense_Mutation p.G279R 0.28 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 11 64665351 64665351 G A ATG2A Missense_Mutation p.H1652Y 0.06 deleterious(0.04) benign(0.044) TCGA-G2-AA3D-01 11 65113262 65113262 G C DPF2 Missense_Mutation p.E255Q 0.26 tolerated(0.1) benign(0.052) TCGA-G2-AA3D-01 12 100041938 100041938 G C FAM71C 5'UTR 0.10 TCGA-G2-AA3D-01 12 106632986 106632986 G A CKAP4 Missense_Mutation p.S542L 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3D-01 12 113416518 113416518 C G OAS2 Missense_Mutation p.D35E 0.33 tolerated(0.47) benign(0.006) TCGA-G2-AA3D-01 12 12240312 12240312 C G BCL2L14 Missense_Mutation p.S200C 0.21 deleterious(0.01) possibly_damaging(0.799) TCGA-G2-AA3D-01 12 2229567 2229567 G T CACNA1C Missense_Mutation p.D150Y 0.05 deleterious(0) probably_damaging(0.974) TCGA-G2-AA3D-01 12 22637656 22637656 C T C2CD5 Missense_Mutation p.G509R 0.06 deleterious(0) probably_damaging(0.994) TCGA-G2-AA3D-01 12 39268287 39268287 G C CPNE8 Missense_Mutation p.S42C 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3D-01 12 49934744 49934744 G C KCNH3 Missense_Mutation p.D47H 0.25 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 12 50498452 50498452 G A GPD1 Missense_Mutation p.G46E 0.07 tolerated(0.36) benign(0.001) TCGA-G2-AA3D-01 12 52911911 52911911 C G KRT5 Missense_Mutation p.E269D 0.06 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 12 53647137 53647137 G A MFSD5 Missense_Mutation p.R280Q 0.05 tolerated(0.11) benign(0.05) TCGA-G2-AA3D-01 12 53804989 53804989 C T SP1 Silent p.L775L 0.09 TCGA-G2-AA3D-01 12 56743503 56743503 C G STAT2 Intron 0.23 TCGA-G2-AA3D-01 12 65462633 65462633 A G WIF1 Missense_Mutation p.F150S 0.15 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 12 7065381 7065381 C G PTPN6 Missense_Mutation p.I307M 0.10 deleterious(0) benign(0.072) TCGA-G2-AA3D-01 13 37524021 37524021 C G ALG5 3'UTR 0.19 TCGA-G2-AA3D-01 13 38320351 38320351 G A TRPC4 Missense_Mutation p.S207F 0.06 deleterious(0) probably_damaging(0.977) TCGA-G2-AA3D-01 13 64321098 64321098 C T AL445989.1 Silent p.G55G 0.09 TCGA-G2-AA3D-01 13 78492690 78492690 G T EDNRB Missense_Mutation p.L97M 0.15 tolerated_low_confidence(0.12) benign(0.149) TCGA-G2-AA3D-01 13 79942876 79942876 C G RBM26 Missense_Mutation p.R295T 0.05 deleterious(0) possibly_damaging(0.863) TCGA-G2-AA3D-01 13 99907445 99907445 C T GPR18 Missense_Mutation p.E228K 0.05 tolerated(0.45) benign(0.059) TCGA-G2-AA3D-01 14 105411522 105411522 G A AHNAK2 Silent p.V3422V 0.05 TCGA-G2-AA3D-01 14 105417004 105417004 T A AHNAK2 Missense_Mutation p.Q1595L 0.08 possibly_damaging(0.583) TCGA-G2-AA3D-01 14 21873903 21873903 C G CHD8 Missense_Mutation p.G1010R 0.04 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 14 45605262 45605262 C G FANCM Missense_Mutation p.Q10E 0.07 deleterious(0) probably_damaging(0.99) TCGA-G2-AA3D-01 14 52985918 52985918 G C TXNDC16 Missense_Mutation p.F162L 0.35 tolerated(0.33) benign(0.05) TCGA-G2-AA3D-01 14 64522974 64522974 G C SYNE2 Missense_Mutation p.E3353Q 0.52 possibly_damaging(0.557) TCGA-G2-AA3D-01 14 68222769 68222769 C A ZFYVE26 Missense_Mutation p.D2228Y 0.04 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3D-01 14 73640330 73640330 C G PSEN1 Nonsense_Mutation p.S132* 0.04 TCGA-G2-AA3D-01 14 74370812 74370812 C T ZNF410 Nonsense_Mutation p.R261* 0.06 TCGA-G2-AA3D-01 14 75583999 75583999 C G NEK9 Missense_Mutation p.E221Q 0.05 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 14 93125564 93125564 C G RIN3 Missense_Mutation p.I695M 0.34 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3D-01 15 22956382 22956382 T G CYFIP1 Intron 0.34 TCGA-G2-AA3D-01 15 25953399 25953399 T A ATP10A Missense_Mutation p.N798I 0.10 deleterious(0) benign(0.01) TCGA-G2-AA3D-01 15 25953403 25953403 G A ATP10A Nonsense_Mutation p.Q797* 0.10 TCGA-G2-AA3D-01 15 29406081 29406081 C G APBA2 Missense_Mutation p.I680M 0.18 deleterious(0) probably_damaging(0.992) TCGA-G2-AA3D-01 15 39883720 39883720 C T THBS1 Missense_Mutation p.R810W 0.07 tolerated(0.14) possibly_damaging(0.898) TCGA-G2-AA3D-01 15 60770254 60770254 C G NARG2 5'UTR 0.08 TCGA-G2-AA3D-01 15 71256172 71256172 C T LRRC49 Silent p.I279I 0.06 TCGA-G2-AA3D-01 15 77228016 77228016 G C RCN2 Missense_Mutation p.D134H 0.06 deleterious(0) probably_damaging(0.921) TCGA-G2-AA3D-01 15 77348172 77348172 C G TSPAN3 Missense_Mutation p.E97Q 0.04 deleterious(0.01) possibly_damaging(0.745) TCGA-G2-AA3D-01 15 82444607 82444607 C T EFTUD1 Missense_Mutation p.E730K 0.07 tolerated(0.14) benign(0.028) TCGA-G2-AA3D-01 16 11966987 11966987 C G GSPT1 Missense_Mutation p.E635Q 0.05 deleterious(0.02) possibly_damaging(0.823) TCGA-G2-AA3D-01 16 1584324 1584324 C G TMEM204 Silent p.V16V 0.05 TCGA-G2-AA3D-01 16 15869997 15869997 C T MYH11 Missense_Mutation p.R283K 0.13 benign(0.002) TCGA-G2-AA3D-01 16 21071651 21071651 C G DNAH3 Missense_Mutation p.Q1249H 0.22 deleterious(0) probably_damaging(0.972) TCGA-G2-AA3D-01 16 30004822 30004822 C T HIRIP3 Missense_Mutation p.E489K 0.05 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3D-01 16 30005577 30005577 C G HIRIP3 Missense_Mutation p.E297Q 0.04 tolerated(0.06) possibly_damaging(0.642) TCGA-G2-AA3D-01 16 30005932 30005932 C T HIRIP3 Silent p.K178K 0.03 TCGA-G2-AA3D-01 16 31926591 31926591 C G ZNF267 Missense_Mutation p.Q341E 0.18 tolerated(0.07) benign(0.028) TCGA-G2-AA3D-01 16 4872881 4872881 C T GLYR1 Missense_Mutation p.E226K 0.06 tolerated(0.42) benign(0.001) TCGA-G2-AA3D-01 16 56309879 56309879 G A GNAO1 Silent p.V66V 0.54 TCGA-G2-AA3D-01 16 67181013 67181013 G A C16orf70 Silent p.L416L 0.09 TCGA-G2-AA3D-01 16 76495887 76495887 C G CNTNAP4 Silent p.V383V 0.04 TCGA-G2-AA3D-01 16 87636808 87636808 G T JPH3 Missense_Mutation p.W19L 0.08 deleterious(0) probably_damaging(0.997) TCGA-G2-AA3D-01 16 87969914 87969914 C T CA5A Splice_Site p.X48_splice 0.04 TCGA-G2-AA3D-01 17 15341416 15341416 C G CDRT4 Missense_Mutation p.E44Q 0.08 deleterious(0.03) possibly_damaging(0.859) TCGA-G2-AA3D-01 17 26960992 26960992 G T KIAA0100 Silent p.I1061I 0.09 TCGA-G2-AA3D-01 17 27899044 27899044 G C TP53I13 Missense_Mutation p.R161T 0.09 tolerated(0.15) benign(0.056) TCGA-G2-AA3D-01 17 29676236 29676236 G C NF1 Missense_Mutation p.E2430Q 0.07 tolerated(0.21) probably_damaging(0.968) TCGA-G2-AA3D-01 17 29676238 29676238 A G NF1 Silent p.E2430E 0.07 TCGA-G2-AA3D-01 17 3427493 3427493 T C TRPV3 Missense_Mutation p.K581R 0.12 tolerated(0.08) probably_damaging(0.992) TCGA-G2-AA3D-01 17 43227373 43227373 G C HEXIM1 Missense_Mutation p.E272D 0.17 tolerated(0.1) benign(0.209) TCGA-G2-AA3D-01 17 4836877 4836877 C T GP1BA Silent p.F326F 0.05 TCGA-G2-AA3D-01 17 5085335 5085335 C G ZNF594 Missense_Mutation p.E739D 0.06 tolerated(0.08) benign(0.004) TCGA-G2-AA3D-01 17 5086795 5086795 C G ZNF594 Missense_Mutation p.D253H 0.07 tolerated(0.46) benign(0.04) TCGA-G2-AA3D-01 17 63554147 63554147 C G AXIN2 Missense_Mutation p.E198Q 0.11 deleterious(0.01) benign(0.205) TCGA-G2-AA3D-01 17 72942798 72942798 G C OTOP3 Missense_Mutation p.C283S 0.03 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 17 74738093 74738093 C G MFSD11 Missense_Mutation p.F101L 0.03 tolerated(1) benign(0.008) TCGA-G2-AA3D-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.61 TCGA-G2-AA3D-01 17 986835 986835 G C ABR Silent p.V188V 0.39 TCGA-G2-AA3D-01 18 42530413 42530413 G C SETBP1 Missense_Mutation p.E370Q 0.08 tolerated(0.13) possibly_damaging(0.584) TCGA-G2-AA3D-01 19 12945619 12945619 C G RTBDN Missense_Mutation p.E20Q 0.25 tolerated_low_confidence(0.13) benign(0.188) TCGA-G2-AA3D-01 19 12976861 12976861 G C MAST1 Missense_Mutation p.Q658H 0.07 tolerated(0.05) benign(0.019) TCGA-G2-AA3D-01 19 16000301 16000301 C G CYP4F2 Missense_Mutation p.D284H 0.04 tolerated(0.07) benign(0.061) TCGA-G2-AA3D-01 19 19162885 19162885 C T ARMC6 Missense_Mutation p.A245V 0.10 tolerated(0.15) benign(0.122) TCGA-G2-AA3D-01 19 23415021 23415021 C G ZNF724P Missense_Mutation p.Q26H 0.22 deleterious(0) probably_damaging(0.934) TCGA-G2-AA3D-01 19 33592458 33592458 C G GPATCH1 Missense_Mutation p.S353C 0.05 deleterious(0.01) probably_damaging(0.94) TCGA-G2-AA3D-01 19 36110926 36110926 G T HAUS5 Silent p.L473L 0.13 TCGA-G2-AA3D-01 19 36237637 36237637 C G PSENEN Silent p.L65L 0.11 TCGA-G2-AA3D-01 19 38573136 38573136 G A SIPA1L3 Missense_Mutation p.E311K 0.17 deleterious(0) benign(0.125) TCGA-G2-AA3D-01 19 38995514 38995514 G T RYR1 Nonsense_Mutation p.E2732* 0.07 TCGA-G2-AA3D-01 19 40747875 40747875 C A AKT2 Missense_Mutation p.K181N 0.08 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 19 41388032 41388032 C G CYP2A7 Missense_Mutation p.K28N 0.21 tolerated(0.28) benign(0.011) TCGA-G2-AA3D-01 19 43233961 43233961 G T PSG3 Silent p.I319I 0.05 TCGA-G2-AA3D-01 19 43698494 43698494 G C PSG4 Missense_Mutation p.S414C 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-G2-AA3D-01 19 51630505 51630505 C T SIGLEC9 Nonsense_Mutation p.Q323* 0.18 TCGA-G2-AA3D-01 19 52031055 52031055 G A SIGLEC6 Silent p.A378A 0.19 TCGA-G2-AA3D-01 19 52272151 52272151 C A FPR2 Missense_Mutation p.F80L 0.05 tolerated(0.16) benign(0.162) TCGA-G2-AA3D-01 19 56388416 56388416 C A NLRP4 Silent p.L860L 0.14 TCGA-G2-AA3D-01 19 56392982 56392982 C T NLRP4 3'UTR 0.17 TCGA-G2-AA3D-01 19 9064218 9064218 G T MUC16 Missense_Mutation p.S7743Y 0.05 unknown(0) TCGA-G2-AA3D-01 19 9204001 9204001 C G OR1M1 Silent p.L27L 0.08 TCGA-G2-AA3D-01 19 9801142 9801142 G A ZNF812 Missense_Mutation p.S346L 0.05 tolerated(0.05) benign(0.08) TCGA-G2-AA3D-01 19 9801836 9801836 C G ZNF812 Missense_Mutation p.E115Q 0.19 tolerated(0.11) probably_damaging(0.993) TCGA-G2-AA3D-01 1 110251114 110251114 T A GSTM5 5'Flank 0.60 TCGA-G2-AA3D-01 1 112303847 112303847 G C DDX20 Splice_Site p.X321_splice 0.17 TCGA-G2-AA3D-01 1 113126720 113126720 C T ST7L Missense_Mutation p.E244K 0.25 tolerated(0.07) probably_damaging(0.932) TCGA-G2-AA3D-01 1 11982750 11982750 G C KIAA2013 Missense_Mutation p.F610L 0.18 tolerated(0.09) probably_damaging(0.987) TCGA-G2-AA3D-01 1 13474983 13474983 G C PRAMEF18 Missense_Mutation p.F382L 0.06 tolerated(0.19) probably_damaging(0.991) TCGA-G2-AA3D-01 1 150484991 150484991 G C ECM1 Missense_Mutation p.R443P 0.10 tolerated(0.08) possibly_damaging(0.764) TCGA-G2-AA3D-01 1 150485863 150485863 G A ECM1 Missense_Mutation p.E542K 0.11 tolerated(0.42) benign(0.164) TCGA-G2-AA3D-01 1 151377585 151377585 A G POGZ Missense_Mutation p.L1309P 0.15 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 1 154920692 154920692 G A PBXIP1 Missense_Mutation p.A187V 0.22 tolerated(0.59) benign(0.022) TCGA-G2-AA3D-01 1 155149754 155149754 G A TRIM46 Silent p.V299V 0.12 TCGA-G2-AA3D-01 1 155319153 155319153 C G ASH1L Missense_Mutation p.D2507H 0.05 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-G2-AA3D-01 1 155717705 155717705 G A GON4L 3'Flank 0.26 TCGA-G2-AA3D-01 1 155724205 155724205 C G GON4L Missense_Mutation p.K1864N 0.23 deleterious(0) possibly_damaging(0.607) TCGA-G2-AA3D-01 1 15771171 15771171 G C CTRC Missense_Mutation p.R188S 0.09 tolerated(0.71) benign(0.024) TCGA-G2-AA3D-01 1 159842861 159842861 C T CCDC19 Missense_Mutation p.E484K 0.09 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 1 160970026 160970026 G C F11R Missense_Mutation p.F167L 0.05 deleterious(0.01) possibly_damaging(0.507) TCGA-G2-AA3D-01 1 16258383 16258383 C G SPEN Missense_Mutation p.S1883C 0.06 possibly_damaging(0.503) TCGA-G2-AA3D-01 1 166039720 166039720 C G FAM78B Missense_Mutation p.E182Q 0.08 tolerated(0.06) probably_damaging(0.994) TCGA-G2-AA3D-01 1 169555470 169555470 G TA F5 Frame_Shift_Ins p.S52Lfs*11 0.16 TCGA-G2-AA3D-01 1 169696531 169696531 C G SELE Missense_Mutation p.G535A 0.06 tolerated(0.15) possibly_damaging(0.595) TCGA-G2-AA3D-01 1 169696571 169696571 C G SELE Missense_Mutation p.E522Q 0.06 deleterious(0.01) possibly_damaging(0.644) TCGA-G2-AA3D-01 1 184853821 184853821 C T FAM129A Missense_Mutation p.D183N 0.10 tolerated(0.16) benign(0.358) TCGA-G2-AA3D-01 1 18807546 18807546 C G KLHDC7A Nonsense_Mutation p.S24* 0.07 TCGA-G2-AA3D-01 1 197404675 197404675 A T CRB1 Missense_Mutation p.T1228S 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-G2-AA3D-01 1 202104293 202104293 C G ARL8A Missense_Mutation p.E166Q 0.09 tolerated(0.07) benign(0.175) TCGA-G2-AA3D-01 1 203138156 203138156 G C MYBPH Missense_Mutation p.S432C 0.07 tolerated(0.08) benign(0.289) TCGA-G2-AA3D-01 1 205210762 205210762 G A TMCC2 Missense_Mutation p.G113S 0.43 tolerated_low_confidence(0.29) benign(0.022) TCGA-G2-AA3D-01 1 222838791 222838791 G C MIA3 Missense_Mutation p.E1852Q 0.04 tolerated(0.05) probably_damaging(0.931) TCGA-G2-AA3D-01 1 22828850 22828850 G C ZBTB40 Silent p.L361L 0.08 TCGA-G2-AA3D-01 1 230928604 230928604 C G CAPN9 Missense_Mutation p.F600L 0.08 deleterious(0) possibly_damaging(0.529) TCGA-G2-AA3D-01 1 235973621 235973621 G C LYST Nonsense_Mutation p.S166* 0.04 TCGA-G2-AA3D-01 1 247040279 247040279 C G AHCTF1 Silent p.L979L 0.13 TCGA-G2-AA3D-01 1 27100375 27100375 C T ARID1A Nonsense_Mutation p.Q1363* 0.31 TCGA-G2-AA3D-01 1 29070129 29070129 G A YTHDF2 Missense_Mutation p.M449I 0.18 tolerated(0.44) benign(0.013) TCGA-G2-AA3D-01 1 31532287 31532287 C A PUM1 Missense_Mutation p.G43W 0.19 deleterious_low_confidence(0) possibly_damaging(0.644) TCGA-G2-AA3D-01 1 42628483 42628483 G C GUCA2A 3'UTR 0.18 TCGA-G2-AA3D-01 1 44169302 44169302 C G KDM4A Silent p.L952L 0.06 TCGA-G2-AA3D-01 1 46034277 46034277 G A AKR1A1 Missense_Mutation p.E225K 0.05 deleterious(0.01) benign(0.055) TCGA-G2-AA3D-01 1 53236924 53236924 G A ZYG11B Silent p.L143L 0.06 TCGA-G2-AA3D-01 1 65874383 65874383 C G DNAJC6 Missense_Mutation p.H851D 0.12 deleterious(0.01) benign(0.326) TCGA-G2-AA3D-01 1 68152114 68152114 C G GADD45A Silent p.T76T 0.26 TCGA-G2-AA3D-01 1 68954627 68954627 C G DEPDC1 Missense_Mutation p.E188Q 0.04 deleterious(0.02) benign(0.191) TCGA-G2-AA3D-01 1 72400955 72400955 C T NEGR1 Silent p.L72L 0.10 TCGA-G2-AA3D-01 1 82450385 82450385 C T LPHN2 Missense_Mutation p.S1117F 0.05 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 20 2636788 2636788 C T NOP56 Intron 0.12 TCGA-G2-AA3D-01 20 2637104 2637104 C T NOP56 Silent p.F356F 0.09 TCGA-G2-AA3D-01 20 2843164 2843164 G - VPS16 Intron 0.40 TCGA-G2-AA3D-01 20 39978986 39978986 C G LPIN3 Missense_Mutation p.L351V 0.18 tolerated(0.38) benign(0.017) TCGA-G2-AA3D-01 20 44672550 44672550 G T SLC12A5 Nonsense_Mutation p.E481* 0.04 TCGA-G2-AA3D-01 20 46265115 46265115 C G NCOA3 Missense_Mutation p.S662C 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-G2-AA3D-01 20 61511778 61511778 C G DIDO1 Missense_Mutation p.E1844Q 0.06 possibly_damaging(0.776) TCGA-G2-AA3D-01 20 61525505 61525506 - T DIDO1 Frame_Shift_Ins p.Q872Tfs*8 0.13 TCGA-G2-AA3D-01 21 15746431 15746431 G A HSPA13 Missense_Mutation p.S308L 0.14 deleterious(0.03) benign(0.248) TCGA-G2-AA3D-01 21 33829917 33829917 G A EVA1C Missense_Mutation p.E124K 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-G2-AA3D-01 21 34072267 34072267 C G SYNJ1 Silent p.R159R 0.06 TCGA-G2-AA3D-01 21 41550854 41550854 C G DSCAM Missense_Mutation p.A983P 0.10 tolerated(0.13) benign(0.006) TCGA-G2-AA3D-01 21 43510538 43510538 G A UMODL1 Silent p.L307L 0.19 TCGA-G2-AA3D-01 21 43912907 43912907 G C RSPH1 Missense_Mutation p.Q79E 0.05 tolerated(0.1) possibly_damaging(0.525) TCGA-G2-AA3D-01 22 22869147 22869147 C G ZNF280A Missense_Mutation p.E270Q 0.03 deleterious(0) benign(0.046) TCGA-G2-AA3D-01 22 23437855 23437855 C G GNAZ 5'UTR 0.14 TCGA-G2-AA3D-01 22 36157306 36157306 C G RBFOX2 Missense_Mutation p.D303H 0.06 benign(0.004) TCGA-G2-AA3D-01 22 37163887 37163887 C G IFT27 Missense_Mutation p.K18N 0.03 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 22 38897197 38897197 C T DDX17 Missense_Mutation p.E126K 0.06 tolerated(0.37) benign(0.042) TCGA-G2-AA3D-01 22 39268202 39268202 C T CBX6 5'UTR 0.21 TCGA-G2-AA3D-01 22 40661319 40661319 G A TNRC6B Missense_Mutation p.R362K 0.07 tolerated(0.12) probably_damaging(0.983) TCGA-G2-AA3D-01 22 46664425 46664425 G A TTC38 Silent p.A16A 0.14 TCGA-G2-AA3D-01 22 46712243 46712243 C A GTSE1 Missense_Mutation p.L456I 0.07 tolerated(0.07) probably_damaging(0.977) TCGA-G2-AA3D-01 22 50721825 50721825 C G PLXNB2 Missense_Mutation p.E874Q 0.08 tolerated(0.34) possibly_damaging(0.454) TCGA-G2-AA3D-01 2 116538543 116538543 G A DPP10 Missense_Mutation p.M489I 0.06 deleterious(0.02) benign(0.007) TCGA-G2-AA3D-01 2 133542628 133542628 C T NCKAP5 Missense_Mutation p.E586K 0.13 deleterious(0) probably_damaging(0.987) TCGA-G2-AA3D-01 2 166773802 166773802 C G TTC21B Missense_Mutation p.E622Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 2 168105568 168105568 G C XIRP2 Missense_Mutation p.E2556Q 0.14 benign(0.406) TCGA-G2-AA3D-01 2 171356275 171356275 G C MYO3B Missense_Mutation p.R1082S 0.25 deleterious(0) benign(0.15) TCGA-G2-AA3D-01 2 171902771 171902771 G C TLK1 Missense_Mutation p.S361C 0.06 deleterious(0.02) benign(0.401) TCGA-G2-AA3D-01 2 175331298 175331298 G A GPR155 Missense_Mutation p.L414F 0.05 tolerated(1) benign(0.005) TCGA-G2-AA3D-01 2 179597384 179597384 G A TTN Silent p.C5468C 0.12 TCGA-G2-AA3D-01 2 202070673 202070673 C T CASP10 Silent p.L264L 0.10 TCGA-G2-AA3D-01 2 207615669 207615669 C G MDH1B Missense_Mutation p.L347F 0.06 deleterious(0.01) probably_damaging(0.936) TCGA-G2-AA3D-01 2 220356867 220356867 C A SPEG Missense_Mutation p.P3166T 0.17 probably_damaging(1) TCGA-G2-AA3D-01 2 24440778 24440778 C T ITSN2 Silent p.L1268L 0.06 TCGA-G2-AA3D-01 2 28849333 28849333 C G PLB1 Silent p.L1206L 0.08 TCGA-G2-AA3D-01 2 32712726 32712726 C T BIRC6 Missense_Mutation p.P2609L 0.09 benign(0.016) TCGA-G2-AA3D-01 2 38177634 38177634 G A RMDN2 5'UTR 0.06 TCGA-G2-AA3D-01 2 55481222 55481222 C G MTIF2 Missense_Mutation p.A207P 0.15 tolerated(0.06) probably_damaging(0.979) TCGA-G2-AA3D-01 2 55544750 55544750 C T CCDC88A Silent p.L1183L 0.04 TCGA-G2-AA3D-01 2 61450200 61450200 C T USP34 Missense_Mutation p.E2582K 0.12 tolerated(0.5) benign(0.343) TCGA-G2-AA3D-01 2 63834158 63834158 G A MDH1 3'UTR 0.08 TCGA-G2-AA3D-01 2 74745558 74745558 C - DQX1 3'UTR 0.32 TCGA-G2-AA3D-01 2 89278090 89278090 C G IGKV3-7 Missense_Mutation p.R82T 0.05 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3D-01 3 10312562 10312562 C A TATDN2 Missense_Mutation p.H566N 0.09 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 3 115560742 115560742 C T LSAMP Missense_Mutation p.C290Y 0.08 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 3 121342113 121342113 G C FBXO40 Missense_Mutation p.E613Q 0.05 tolerated(0.21) benign(0.187) TCGA-G2-AA3D-01 3 124748156 124748156 C T HEG1 Missense_Mutation p.E165K 0.09 tolerated_low_confidence(0.12) benign(0.028) TCGA-G2-AA3D-01 3 129251091 129251091 C T RHO Intron 0.10 TCGA-G2-AA3D-01 3 142171975 142171975 C T ATR Missense_Mutation p.E2586K 0.09 deleterious(0) benign(0.419) TCGA-G2-AA3D-01 3 14709665 14709665 G C CCDC174 Missense_Mutation p.G310A 0.32 tolerated(0.45) benign(0) TCGA-G2-AA3D-01 3 150398258 150398258 C G FAM194A Missense_Mutation p.D370H 0.08 tolerated(0.54) possibly_damaging(0.652) TCGA-G2-AA3D-01 3 150931704 150931704 G T P2RY14 Nonsense_Mutation p.S134* 0.08 TCGA-G2-AA3D-01 3 151164988 151164988 C T IGSF10 Missense_Mutation p.M927I 0.03 tolerated(0.23) benign(0) TCGA-G2-AA3D-01 3 15282016 15282016 C T CAPN7 Missense_Mutation p.H482Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3D-01 3 158537505 158537505 G A MFSD1 Silent p.E289E 0.35 TCGA-G2-AA3D-01 3 159706729 159706729 G T IL12A 5'UTR 0.38 TCGA-G2-AA3D-01 3 179066623 179066623 C G MFN1 Intron 0.17 TCGA-G2-AA3D-01 3 189675728 189675728 C T LEPREL1 Silent p.L700L 0.15 TCGA-G2-AA3D-01 3 27450957 27450957 C T SLC4A7 Missense_Mutation p.D602N 0.08 deleterious(0) possibly_damaging(0.794) TCGA-G2-AA3D-01 3 37323608 37323608 G C GOLGA4 Missense_Mutation p.D130H 0.05 probably_damaging(0.987) TCGA-G2-AA3D-01 3 38307471 38307471 C G SLC22A13 Silent p.V40V 0.04 TCGA-G2-AA3D-01 3 47282330 47282330 C T KIF9 Missense_Mutation p.E629K 0.08 tolerated(0.3) benign(0.009) TCGA-G2-AA3D-01 3 49698168 49698168 G A BSN Missense_Mutation p.E2964K 0.17 unknown(0) TCGA-G2-AA3D-01 3 50355631 50355631 C T HYAL2 Missense_Mutation p.E451K 0.09 tolerated(0.91) benign(0.005) TCGA-G2-AA3D-01 3 52326569 52326569 G A GLYCTK Silent p.L333L 0.08 TCGA-G2-AA3D-01 3 52824786 52824786 G C ITIH1 Missense_Mutation p.K781N 0.05 tolerated(0.07) possibly_damaging(0.579) TCGA-G2-AA3D-01 3 56601075 56601075 G C CCDC66 Missense_Mutation p.E270Q 0.04 deleterious(0) probably_damaging(0.947) TCGA-G2-AA3D-01 3 97852025 97852025 T G OR5H1 Missense_Mutation p.F162V 0.41 deleterious(0.02) benign(0.114) TCGA-G2-AA3D-01 4 110866336 110866336 G C EGF Missense_Mutation p.R282T 0.05 tolerated(0.57) benign(0.007) TCGA-G2-AA3D-01 4 123304955 123304955 T A ADAD1 Silent p.G121G 0.17 TCGA-G2-AA3D-01 4 153273765 153273765 C T FBXW7 Intron 0.24 TCGA-G2-AA3D-01 4 165962443 165962443 C T TRIM60 Silent p.L407L 0.06 TCGA-G2-AA3D-01 4 20597372 20597372 G A SLIT2 Missense_Mutation p.D1079N 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-G2-AA3D-01 4 24572344 24572344 T A DHX15 Missense_Mutation p.M212L 0.35 tolerated(0.1) benign(0) TCGA-G2-AA3D-01 4 40146341 40146341 G C N4BP2 Missense_Mutation p.Q1688H 0.08 deleterious(0.02) possibly_damaging(0.836) TCGA-G2-AA3D-01 4 69188522 69188522 G C YTHDC1 Missense_Mutation p.Q516E 0.07 tolerated(0.45) benign(0.008) TCGA-G2-AA3D-01 4 77051811 77051811 C G NUP54 Missense_Mutation p.D352H 0.17 deleterious(0) possibly_damaging(0.751) TCGA-G2-AA3D-01 4 77660886 77660886 G A SHROOM3 Silent p.Q520Q 0.05 TCGA-G2-AA3D-01 4 83860797 83860797 C G LIN54 Missense_Mutation p.Q445H 0.06 deleterious(0.05) benign(0.024) TCGA-G2-AA3D-01 4 95539244 95539244 G C PDLIM5 Missense_Mutation p.R366T 0.20 tolerated(0.25) benign(0.013) TCGA-G2-AA3D-01 5 101735262 101735262 G A SLCO6A1 Missense_Mutation p.T604M 0.24 tolerated(0.13) benign(0.01) TCGA-G2-AA3D-01 5 140166709 140166709 C G PCDHA1 Silent p.V278V 0.09 TCGA-G2-AA3D-01 5 140168308 140168308 C A PCDHA1 Intron 0.15 TCGA-G2-AA3D-01 5 140480869 140480869 C T PCDHB3 Silent p.L212L 0.17 TCGA-G2-AA3D-01 5 140711934 140711934 G A PCDHGA1 Silent p.E561E 0.04 TCGA-G2-AA3D-01 5 157158395 157158395 G C THG1L 5'UTR 0.21 TCGA-G2-AA3D-01 5 158630533 158630533 G A RNF145 Silent p.V61V 0.12 TCGA-G2-AA3D-01 5 178408760 178408760 G C GRM6 Silent p.L844L 0.10 TCGA-G2-AA3D-01 5 180218698 180218698 C T MGAT1 Missense_Mutation p.R425Q 0.22 benign(0.114) TCGA-G2-AA3D-01 5 38991111 38991111 C G RICTOR Missense_Mutation p.D175H 0.05 deleterious(0) probably_damaging(0.994) TCGA-G2-AA3D-01 5 64483953 64483953 C T ADAMTS6 Missense_Mutation p.E934K 0.07 deleterious(0) benign(0.411) TCGA-G2-AA3D-01 5 68661562 68661562 C T TAF9 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-G2-AA3D-01 5 78181578 78181578 C T ARSB Missense_Mutation p.G324E 0.04 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 5 96500827 96500827 C G RIOK2 Missense_Mutation p.M474I 0.13 tolerated(1) benign(0) TCGA-G2-AA3D-01 6 108068029 108068029 C T SCML4 Silent p.Q117Q 0.12 TCGA-G2-AA3D-01 6 122720937 122720937 G C HSF2 Missense_Mutation p.E19Q 0.08 deleterious(0.01) probably_damaging(0.977) TCGA-G2-AA3D-01 6 161455436 161455436 C G MAP3K4 Missense_Mutation p.Q100E 0.13 deleterious_low_confidence(0.02) benign(0.141) TCGA-G2-AA3D-01 6 25776883 25776883 C G SLC17A4 Missense_Mutation p.L350V 0.08 tolerated(0.49) possibly_damaging(0.908) TCGA-G2-AA3D-01 6 26032171 26032171 G T HIST1H3B Missense_Mutation p.H40N 0.08 deleterious_low_confidence(0) benign(0) TCGA-G2-AA3D-01 6 26452286 26452286 G C BTN3A3 Missense_Mutation p.E468Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3D-01 6 29430086 29430086 A G OR2H1 Silent p.P180P 0.05 TCGA-G2-AA3D-01 6 3019730 3019730 C G NQO2 Missense_Mutation p.F179L 0.04 tolerated(0.11) probably_damaging(0.999) TCGA-G2-AA3D-01 6 31473465 31473465 G T MICB Nonsense_Mutation p.E48* 0.04 TCGA-G2-AA3D-01 6 32023874 32023874 C G TNXB Missense_Mutation p.E2741Q 0.11 probably_damaging(0.986) TCGA-G2-AA3D-01 6 35259396 35259396 C T ZNF76 Silent p.I271I 0.07 TCGA-G2-AA3D-01 6 4131057 4131057 C G ECI2 Missense_Mutation p.D86H 0.09 deleterious(0) probably_damaging(0.991) TCGA-G2-AA3D-01 6 42819892 42819892 G C GLTSCR1L Silent p.L634L 0.20 TCGA-G2-AA3D-01 6 43146098 43146098 C G SRF Missense_Mutation p.P410R 0.11 tolerated(0.09) possibly_damaging(0.905) TCGA-G2-AA3D-01 6 43483773 43483773 C G YIPF3 Missense_Mutation p.E48Q 0.08 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-G2-AA3D-01 6 44219877 44219877 C T HSP90AB1 Missense_Mutation p.S535L 0.31 tolerated(0.06) possibly_damaging(0.849) TCGA-G2-AA3D-01 6 76412689 76412689 G C SENP6 Missense_Mutation p.E873Q 0.04 tolerated(0.08) possibly_damaging(0.464) TCGA-G2-AA3D-01 6 76412728 76412728 G C SENP6 Missense_Mutation p.D886H 0.06 tolerated(0.39) possibly_damaging(0.824) TCGA-G2-AA3D-01 6 82891597 82891597 T G IBTK Silent p.R1242R 0.08 TCGA-G2-AA3D-01 6 90353795 90353795 C T MDN1 Missense_Mutation p.A5574T 0.21 unknown(0) TCGA-G2-AA3D-01 7 100679217 100679217 C G MUC17 Nonsense_Mutation p.S1507* 0.05 TCGA-G2-AA3D-01 7 100866799 100866799 C T ZNHIT1 Missense_Mutation p.R79C 0.04 deleterious(0) probably_damaging(0.94) TCGA-G2-AA3D-01 7 128802278 128802278 G T TSPAN33 Silent p.L68L 0.10 TCGA-G2-AA3D-01 7 129760673 129760673 G A KLHDC10 Missense_Mutation p.C187Y 0.12 tolerated(0.18) benign(0.113) TCGA-G2-AA3D-01 7 132481277 132481277 C A CHCHD3 Nonsense_Mutation p.E196* 0.06 TCGA-G2-AA3D-01 7 19184937 19184937 C T FERD3L Missense_Mutation p.V17I 0.15 tolerated(0.07) probably_damaging(0.996) TCGA-G2-AA3D-01 7 21583189 21583189 C T DNAH11 Missense_Mutation p.S109L 0.18 benign(0.001) TCGA-G2-AA3D-01 7 30795236 30795236 C G INMT Silent p.L187L 0.06 TCGA-G2-AA3D-01 7 73151574 73151574 C T ABHD11 Missense_Mutation p.E204K 0.06 tolerated(0.09) benign(0.067) TCGA-G2-AA3D-01 7 75933142 75933142 G A HSPB1 Missense_Mutation p.E130K 0.11 tolerated(0.08) benign(0.26) TCGA-G2-AA3D-01 7 83634727 83634727 G C SEMA3A Missense_Mutation p.Q430E 0.07 tolerated(0.33) possibly_damaging(0.698) TCGA-G2-AA3D-01 7 86479787 86479787 G A GRM3 Silent p.Q831Q 0.08 TCGA-G2-AA3D-01 7 98445701 98445701 G C TMEM130 Missense_Mutation p.S429C 0.17 tolerated(0.07) probably_damaging(0.978) TCGA-G2-AA3D-01 8 103266678 103266678 G A UBR5 Missense_Mutation p.S2751L 0.11 deleterious(0) probably_damaging(0.952) TCGA-G2-AA3D-01 8 135614909 135614909 C T ZFAT Silent p.K351K 0.12 TCGA-G2-AA3D-01 8 135615076 135615076 C T ZFAT Missense_Mutation p.E296K 0.12 deleterious(0) probably_damaging(0.996) TCGA-G2-AA3D-01 8 19277864 19277864 C G CSGALNACT1 Silent p.L373L 0.36 TCGA-G2-AA3D-01 8 22020094 22020094 C T SFTPC Missense_Mutation p.S17F 0.33 deleterious(0) probably_damaging(0.938) TCGA-G2-AA3D-01 8 67578640 67578640 G C VCPIP1 Missense_Mutation p.S185C 0.04 deleterious(0) probably_damaging(0.984) TCGA-G2-AA3D-01 8 95839594 95839594 C T INTS8 Missense_Mutation p.P137S 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-G2-AA3D-01 9 131296203 131296204 - G GLE1 Frame_Shift_Ins p.M542Nfs*83 0.11 TCGA-G2-AA3D-01 9 132590391 132590391 G A C9orf78 3'UTR 0.24 TCGA-G2-AA3D-01 9 134814833 134814833 C T MED27 Missense_Mutation p.D170N 0.07 tolerated(0.32) benign(0.1) TCGA-G2-AA3D-01 9 139840549 139840549 G A C8G Missense_Mutation p.R120Q 0.17 tolerated(0.13) benign(0.405) TCGA-G2-AA3D-01 9 33255187 33255187 C A BAG1 3'UTR 0.04 TCGA-G2-AA3D-01 9 35612927 35612927 G C CD72 Nonsense_Mutation p.S251* 0.04 TCGA-G2-AA3D-01 9 35808587 35808587 C T NPR2 Missense_Mutation p.R932C 0.25 deleterious(0) possibly_damaging(0.828) TCGA-G2-AA3D-01 9 94486758 94486758 G C ROR2 Nonsense_Mutation p.S673* 0.16 TCGA-G2-AA3D-01 9 95277211 95277211 C G ECM2 Missense_Mutation p.Q252H 0.05 deleterious(0.04) benign(0.001) TCGA-G2-AA3D-01 9 95375412 95375412 G C CENPP Missense_Mutation p.C283S 0.07 tolerated(0.21) benign(0.152) TCGA-G2-AA3D-01 X 108924330 108924330 G A ACSL4 Silent p.I225I 0.07 TCGA-G2-AA3D-01 X 120182900 120182900 G C GLUD2 Missense_Mutation p.L454F 0.04 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3D-01 X 120183000 120183000 G T GLUD2 Missense_Mutation p.V488L 0.09 tolerated(0.27) benign(0.001) TCGA-G2-AA3D-01 X 123197011 123197011 C T STAG2 Nonsense_Mutation p.Q593* 0.43 TCGA-G2-AA3D-01 X 148069076 148069076 G C AFF2 Missense_Mutation p.R1268T 0.14 deleterious(0.04) possibly_damaging(0.841) TCGA-G2-AA3D-01 X 152991452 152991452 C T ABCD1 Missense_Mutation p.S244L 0.19 tolerated(0.7) benign(0.009) TCGA-G2-AA3D-01 X 153714208 153714208 C T UBL4A Missense_Mutation p.D89N 0.08 tolerated(0.35) benign(0.05) TCGA-G2-AA3D-01 X 44918599 44918599 T C KDM6A Missense_Mutation p.L361P 0.75 deleterious(0) probably_damaging(1) TCGA-G2-AA3D-01 X 48125805 48125805 G A SSX1 Missense_Mutation p.E184K 0.07 deleterious(0.03) probably_damaging(1) TCGA-G2-AA3D-01 X 50051992 50051992 G A CCNB3 Missense_Mutation p.E275K 0.38 tolerated(0.09) probably_damaging(0.977) TCGA-G2-AA3D-01 X 73963600 73963600 A G KIAA2022 Silent p.F264F 0.66 TCGA-G2-AA3F-01 10 107022191 107022191 C T SORCS3 Silent p.L1182L 0.15 TCGA-G2-AA3F-01 10 128974576 128974576 C T FAM196A Missense_Mutation p.M28I 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-G2-AA3F-01 10 129906963 129906963 C T MKI67 Silent p.T1047T 0.21 TCGA-G2-AA3F-01 10 26581413 26581413 C T GAD2 Missense_Mutation p.A469V 0.32 tolerated(0.27) probably_damaging(0.989) TCGA-G2-AA3F-01 10 27688163 27688163 C T PTCHD3 Missense_Mutation p.G455E 0.33 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 10 30658303 30658303 C A AL161651.1 5'Flank 0.07 TCGA-G2-AA3F-01 10 35320309 35320309 G C CUL2 Nonsense_Mutation p.Y454* 0.10 TCGA-G2-AA3F-01 10 43883162 43883162 A C HNRNPF Silent p.A57A 0.18 TCGA-G2-AA3F-01 10 73046531 73046531 G C UNC5B Missense_Mutation p.R213P 0.46 deleterious(0) possibly_damaging(0.829) TCGA-G2-AA3F-01 10 78704623 78704623 G A KCNMA1 Missense_Mutation p.S920L 0.18 deleterious(0.02) benign(0.22) TCGA-G2-AA3F-01 10 859021 859021 C G LARP4B Missense_Mutation p.E688Q 0.30 deleterious(0.01) possibly_damaging(0.653) TCGA-G2-AA3F-01 10 88769681 88769681 G T RP11-96C23.10 RNA 0.39 TCGA-G2-AA3F-01 11 100962575 100962575 C T PGR Missense_Mutation p.D608N 0.21 deleterious(0.01) probably_damaging(1) TCGA-G2-AA3F-01 11 103114489 103114489 A G DYNC2H1 Missense_Mutation p.K3303R 0.28 benign(0.015) TCGA-G2-AA3F-01 11 108356908 108356908 C G KDELC2 Missense_Mutation p.E220D 0.65 tolerated(0.2) probably_damaging(0.999) TCGA-G2-AA3F-01 11 116728585 116728585 A T SIK3 Missense_Mutation p.I1093K 0.59 tolerated_low_confidence(0.09) benign(0.06) TCGA-G2-AA3F-01 11 124621320 124621324 GGATG - VSIG2 Frame_Shift_Del p.H72Nfs*15 0.23 TCGA-G2-AA3F-01 11 134244910 134244910 C T GLB1L2 Silent p.F623F 0.23 TCGA-G2-AA3F-01 11 18472663 18472663 C G LDHC Missense_Mutation p.L330V 0.14 deleterious(0.02) probably_damaging(0.991) TCGA-G2-AA3F-01 11 3687600 3687600 C T CHRNA10 Missense_Mutation p.E364K 0.36 tolerated(0.27) benign(0.004) TCGA-G2-AA3F-01 11 43819947 43819947 G A HSD17B12 Missense_Mutation p.G121S 0.52 tolerated(0.26) benign(0.072) TCGA-G2-AA3F-01 11 47464327 47464327 C G RAPSN Missense_Mutation p.E191Q 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-G2-AA3F-01 11 63486281 63486282 - A RTN3 Frame_Shift_Ins p.S105Kfs*50 0.18 TCGA-G2-AA3F-01 11 64954754 64954754 G C CAPN1 Silent p.V276V 0.50 TCGA-G2-AA3F-01 11 6977483 6977491 TCAAAAACT - ZNF215 In_Frame_Del p.Q426_L428del 0.41 TCGA-G2-AA3F-01 11 96086736 96086736 C T CCDC82 3'UTR 0.23 TCGA-G2-AA3F-01 12 49298052 49298052 C A CCDC65 5'UTR 0.18 TCGA-G2-AA3F-01 12 49420661 49420661 G A KMT2D Missense_Mutation p.R5030C 0.28 unknown(0) TCGA-G2-AA3F-01 12 56827380 56827380 T G TIMELESS Missense_Mutation p.E103A 0.62 deleterious(0) benign(0.3) TCGA-G2-AA3F-01 12 6439781 6439781 G C TNFRSF1A Missense_Mutation p.S241C 0.15 deleterious(0) possibly_damaging(0.619) TCGA-G2-AA3F-01 12 8374713 8374713 C G FAM90A1 Missense_Mutation p.R367T 0.11 tolerated(0.14) benign(0.037) TCGA-G2-AA3F-01 13 114290332 114290332 C T TFDP1 Missense_Mutation p.A243V 0.71 tolerated(0.55) benign(0.001) TCGA-G2-AA3F-01 13 88329396 88329396 G A SLITRK5 Missense_Mutation p.V585I 0.54 tolerated(0.26) benign(0.265) TCGA-G2-AA3F-01 14 107012940 107012940 T C IGHV3-49 Missense_Mutation p.R119G 0.45 deleterious_low_confidence(0) possibly_damaging(0.802) TCGA-G2-AA3F-01 14 20826022 20826022 G A PARP2 3'UTR 0.23 TCGA-G2-AA3F-01 14 21876685 21876685 C A CHD8 Missense_Mutation p.G839V 0.32 deleterious(0) probably_damaging(1) TCGA-G2-AA3F-01 14 38060573 38060573 G - FOXA1 Frame_Shift_Del p.*473Sfs*11 0.25 TCGA-G2-AA3F-01 14 47315056 47315056 G A MDGA2 Nonsense_Mutation p.R968* 0.28 TCGA-G2-AA3F-01 14 50101108 50101108 G A DNAAF2 Missense_Mutation p.R254C 0.38 deleterious(0) probably_damaging(0.938) TCGA-G2-AA3F-01 14 69256578 69256578 G - ZFP36L1 Frame_Shift_Del p.P230Lfs*3 0.29 TCGA-G2-AA3F-01 14 69259606 69259624 AAAACTTCGCTCAAGTCGA - ZFP36L1 Frame_Shift_Del p.F11Yfs*63 0.31 TCGA-G2-AA3F-01 14 71413726 71413726 G C PCNX Missense_Mutation p.R83T 0.14 tolerated(0.5) benign(0.001) TCGA-G2-AA3F-01 14 71413729 71413729 C A PCNX Missense_Mutation p.A84E 0.15 deleterious(0.01) benign(0.144) TCGA-G2-AA3F-01 14 92040739 92040739 G A AL133373.1 Missense_Mutation p.A73V 0.40 unknown(0) TCGA-G2-AA3F-01 14 93043704 93043704 G C RIN3 Splice_Site p.X84_splice 0.18 TCGA-G2-AA3F-01 14 94741742 94741742 C T PPP4R4 Silent p.S827S 0.26 TCGA-G2-AA3F-01 14 95574089 95574089 G C DICER1 Missense_Mutation p.S887C 0.26 deleterious(0.01) possibly_damaging(0.867) TCGA-G2-AA3F-01 15 28441665 28441665 G A HERC2 Missense_Mutation p.H2688Y 0.34 possibly_damaging(0.863) TCGA-G2-AA3F-01 15 31327779 31327779 G A TRPM1 Silent p.I907I 0.49 TCGA-G2-AA3F-01 15 42054412 42054412 G C MGA Missense_Mutation p.K2532N 0.27 tolerated(0.23) benign(0.225) TCGA-G2-AA3F-01 15 42058273 42058273 G T MGA Missense_Mutation p.D2665Y 0.16 deleterious(0) possibly_damaging(0.806) TCGA-G2-AA3F-01 15 42058560 42058560 G C MGA Missense_Mutation p.E2760D 0.18 tolerated(0.53) benign(0.009) TCGA-G2-AA3F-01 15 48888540 48888540 A G FBN1 Missense_Mutation p.C160R 0.35 probably_damaging(0.991) TCGA-G2-AA3F-01 15 55621987 55621987 G A PIGB Missense_Mutation p.M196I 0.18 deleterious(0.02) benign(0.201) TCGA-G2-AA3F-01 15 65883984 65883984 C A VWA9 Nonsense_Mutation p.E301* 0.20 TCGA-G2-AA3F-01 15 69080184 69080184 T C ANP32A Silent p.E43E 0.18 TCGA-G2-AA3F-01 15 85669488 85669488 G A PDE8A Silent p.E712E 0.23 TCGA-G2-AA3F-01 16 25228751 25228751 C T AQP8 Missense_Mutation p.T82M 0.63 tolerated(0.08) benign(0.16) TCGA-G2-AA3F-01 16 824887 824887 G A MSLNL Missense_Mutation p.A562V 0.18 possibly_damaging(0.734) TCGA-G2-AA3F-01 16 84792992 84792992 C T USP10 Silent p.C436C 0.09 TCGA-G2-AA3F-01 17 18238990 18238990 C T SHMT1 Splice_Site p.X272_splice 0.21 TCGA-G2-AA3F-01 17 35946534 35946534 C T SYNRG Missense_Mutation p.E122K 0.18 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-G2-AA3F-01 17 38412749 38412749 C T WIPF2 Missense_Mutation p.P13L 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-G2-AA3F-01 17 38950240 38950240 G A KRT28 Missense_Mutation p.A346V 0.44 deleterious(0.01) possibly_damaging(0.612) TCGA-G2-AA3F-01 17 40843507 40843507 G A CNTNAP1 Silent p.R774R 0.37 TCGA-G2-AA3F-01 17 44116518 44116519 - C KANSL1 Frame_Shift_Ins p.A756Gfs*25 0.20 TCGA-G2-AA3F-01 17 47299527 47299527 C A ABI3 Missense_Mutation p.P293T 0.16 tolerated(0.18) possibly_damaging(0.641) TCGA-G2-AA3F-01 17 5392429 5392429 G C MIS12 Missense_Mutation p.E83Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 17 61432490 61432490 C T TANC2 Missense_Mutation p.S700F 0.24 deleterious(0) probably_damaging(0.943) TCGA-G2-AA3F-01 17 64637574 64637574 G A PRKCA Missense_Mutation p.M130I 0.21 deleterious(0.04) benign(0.14) TCGA-G2-AA3F-01 17 7578474 7578475 - G TP53 Frame_Shift_Ins p.P153Afs*28 0.33 TCGA-G2-AA3F-01 19 12059714 12059714 C A ZNF700 Missense_Mutation p.S292Y 0.46 tolerated(0.19) benign(0.117) TCGA-G2-AA3F-01 19 30199320 30199320 T C C19orf12 Missense_Mutation p.M12V 0.44 deleterious(0) possibly_damaging(0.544) TCGA-G2-AA3F-01 19 30199321 30199321 C A C19orf12 Silent p.T11T 0.44 TCGA-G2-AA3F-01 19 39369757 39369757 C T SIRT2 3'UTR 0.17 TCGA-G2-AA3F-01 19 40411866 40411866 C T FCGBP Silent p.A1254A 0.14 TCGA-G2-AA3F-01 19 43433657 43433657 C G PSG7 Missense_Mutation p.E216Q 0.05 deleterious(0.04) benign(0.202) TCGA-G2-AA3F-01 19 48653342 48653342 C A LIG1 Intron 0.13 TCGA-G2-AA3F-01 19 49473069 49473069 G A GYS1 Missense_Mutation p.P618L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3F-01 19 50839864 50839864 G A NAPSB RNA 0.15 TCGA-G2-AA3F-01 19 58438922 58438922 C T ZNF418 Missense_Mutation p.M209I 0.14 tolerated(0.1) benign(0.091) TCGA-G2-AA3F-01 19 6177330 6177330 G T ACSBG2 Missense_Mutation p.A277S 0.41 deleterious(0.03) benign(0.209) TCGA-G2-AA3F-01 1 102270271 102270271 C A OLFM3 Silent p.G300G 0.18 TCGA-G2-AA3F-01 1 12919109 12919109 T A PRAMEF2 Missense_Mutation p.L82Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 1 12954793 12954793 G A PRAMEF10 Silent p.L164L 0.38 TCGA-G2-AA3F-01 1 149901007 149901007 G C MTMR11 3'UTR 0.31 TCGA-G2-AA3F-01 1 152286448 152286448 C T FLG Missense_Mutation p.G305E 0.09 probably_damaging(0.998) TCGA-G2-AA3F-01 1 158735807 158735807 G C OR6N1 Missense_Mutation p.I222M 0.26 deleterious(0) benign(0.257) TCGA-G2-AA3F-01 1 16259375 16259375 G C SPEN Missense_Mutation p.E2214Q 0.21 probably_damaging(0.993) TCGA-G2-AA3F-01 1 16260123 16260123 G C SPEN Missense_Mutation p.S2463T 0.17 benign(0.293) TCGA-G2-AA3F-01 1 16260337 16260337 G A SPEN Silent p.L2534L 0.22 TCGA-G2-AA3F-01 1 206652356 206652356 G A IKBKE Missense_Mutation p.E355K 0.12 deleterious(0.01) possibly_damaging(0.899) TCGA-G2-AA3F-01 1 243362459 243362459 C - CEP170 Frame_Shift_Del p.Q179Sfs*36 0.14 TCGA-G2-AA3F-01 1 248525347 248525347 C T OR2T4 Silent p.Y155Y 0.48 TCGA-G2-AA3F-01 1 27057947 27057947 C G ARID1A Nonsense_Mutation p.S552* 0.51 TCGA-G2-AA3F-01 1 33241524 33241524 G A YARS 3'UTR 0.50 TCGA-G2-AA3F-01 1 33241528 33241528 G A YARS 3'UTR 0.45 TCGA-G2-AA3F-01 1 44457958 44457958 C T CCDC24 Silent p.P67P 0.21 TCGA-G2-AA3F-01 1 46073347 46073347 G C NASP Missense_Mutation p.R255T 0.24 tolerated_low_confidence(0.07) benign(0.004) TCGA-G2-AA3F-01 1 51777808 51777808 A G TTC39A Missense_Mutation p.L117P 0.31 tolerated(0.15) benign(0.139) TCGA-G2-AA3F-01 1 979749 979749 G C AGRN Missense_Mutation p.E728D 0.20 deleterious(0.05) possibly_damaging(0.848) TCGA-G2-AA3F-01 20 51871198 51871198 G T TSHZ2 Missense_Mutation p.V401F 0.19 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 20 52193386 52193386 G C ZNF217 Silent p.L639L 0.13 TCGA-G2-AA3F-01 20 61870759 61870759 C A BIRC7 Silent p.P233P 0.22 TCGA-G2-AA3F-01 21 22696721 22696721 T C NCAM2 Missense_Mutation p.M213T 0.41 tolerated(0.29) benign(0.084) TCGA-G2-AA3F-01 21 33296869 33296869 G T HUNK Missense_Mutation p.M117I 0.20 tolerated(0.05) possibly_damaging(0.907) TCGA-G2-AA3F-01 21 44515577 44515577 C G U2AF1 Missense_Mutation p.D107H 0.30 deleterious(0) probably_damaging(0.95) TCGA-G2-AA3F-01 21 46624533 46624533 G A ADARB1 Silent p.S583S 0.41 TCGA-G2-AA3F-01 21 47666894 47666894 G A MCM3AP Intron 0.45 TCGA-G2-AA3F-01 22 25024085 25024085 G A GGT1 Missense_Mutation p.M458I 0.08 tolerated(1) benign(0.002) TCGA-G2-AA3F-01 22 38041445 38041445 G C SH3BP1 Missense_Mutation p.E284D 0.27 tolerated(0.42) benign(0.005) TCGA-G2-AA3F-01 22 45122478 45122478 A T PRR5 Missense_Mutation p.M119L 0.60 tolerated(0.48) probably_damaging(0.963) TCGA-G2-AA3F-01 22 46654759 46654759 G A PKDREJ Silent p.Y1487Y 0.22 TCGA-G2-AA3F-01 2 103340298 103340298 C A MFSD9 Silent p.P166P 0.81 TCGA-G2-AA3F-01 2 165586618 165586618 T C COBLL1 Missense_Mutation p.M80V 0.48 deleterious(0.02) benign(0.1) TCGA-G2-AA3F-01 2 171913026 171913026 G A TLK1 Silent p.I168I 0.40 TCGA-G2-AA3F-01 2 190719187 190719187 G C PMS1 Missense_Mutation p.D397H 0.19 tolerated(0.22) benign(0.364) TCGA-G2-AA3F-01 2 192820988 192820988 A T TMEFF2 Missense_Mutation p.S288T 0.13 tolerated(0.42) benign(0.049) TCGA-G2-AA3F-01 2 198265449 198265449 T G SF3B1 Missense_Mutation p.Q903P 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-G2-AA3F-01 2 20508257 20508257 G C PUM2 Missense_Mutation p.L203V 0.17 tolerated_low_confidence(0.16) benign(0.02) TCGA-G2-AA3F-01 2 20647449 20647449 C T RHOB Missense_Mutation p.P75S 0.68 tolerated(0.07) possibly_damaging(0.453) TCGA-G2-AA3F-01 2 207652752 207652752 C T FASTKD2 Silent p.L562L 0.29 TCGA-G2-AA3F-01 2 215278847 215278847 C A VWC2L 5'UTR 0.35 TCGA-G2-AA3F-01 2 232079645 232079645 C A ARMC9 Silent p.A93A 0.15 TCGA-G2-AA3F-01 2 238903410 238903410 A C UBE2F Missense_Mutation p.D58A 0.28 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3F-01 2 26997984 26997984 C A SLC35F6 Missense_Mutation p.Q75K 0.27 tolerated(0.79) benign(0.003) TCGA-G2-AA3F-01 2 50280446 50280446 C T NRXN1 Missense_Mutation p.R1404K 0.60 tolerated(0.06) benign(0.098) TCGA-G2-AA3F-01 2 56144934 56144934 G C EFEMP1 Missense_Mutation p.P128R 0.21 deleterious(0.05) benign(0.08) TCGA-G2-AA3F-01 2 77748823 77748823 C A LRRTM4 5'UTR 0.17 TCGA-G2-AA3F-01 2 97026364 97026364 G A NCAPH Silent p.Q501Q 0.07 TCGA-G2-AA3F-01 3 100087960 100087962 TGT - TOMM70A In_Frame_Del p.Q491del 0.24 TCGA-G2-AA3F-01 3 100595363 100595363 G A ABI3BP Silent p.I253I 0.71 TCGA-G2-AA3F-01 3 111368615 111368615 G C CD96 Missense_Mutation p.E574Q 0.23 deleterious(0) possibly_damaging(0.484) TCGA-G2-AA3F-01 3 130187839 130187839 A C COL6A5 Missense_Mutation p.T2331P 0.22 tolerated(0.3) benign(0.003) TCGA-G2-AA3F-01 3 44762949 44762949 G C ZNF502 Missense_Mutation p.E214Q 0.41 tolerated(0.25) benign(0.031) TCGA-G2-AA3F-01 3 52731741 52731741 G C GLT8D1 Missense_Mutation p.L109V 0.39 deleterious(0.04) possibly_damaging(0.822) TCGA-G2-AA3F-01 3 57561312 57561312 G A ARF4 Missense_Mutation p.T140I 0.64 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-G2-AA3F-01 3 93762060 93762060 A T ARL13B Missense_Mutation p.T334S 0.21 tolerated(0.41) benign(0.004) TCGA-G2-AA3F-01 4 38117462 38117462 G T TBC1D1 Missense_Mutation p.A897S 0.15 tolerated(0.06) probably_damaging(0.981) TCGA-G2-AA3F-01 4 48636380 48636380 G A FRYL Silent p.V16V 0.16 TCGA-G2-AA3F-01 4 533031 533031 G A PIGG Missense_Mutation p.R942H 0.63 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 4 675782 675782 G C MYL5 Nonstop_Mutation p.*174Sext*? 0.40 TCGA-G2-AA3F-01 5 127666309 127666309 C G FBN2 Missense_Mutation p.C1434S 0.21 deleterious(0) possibly_damaging(0.759) TCGA-G2-AA3F-01 5 140589699 140589699 G C PCDHB12 Missense_Mutation p.R407T 0.06 tolerated_low_confidence(0.22) benign(0.006) TCGA-G2-AA3F-01 5 140740785 140740785 A G PCDHGB2 Silent p.P361P 0.26 TCGA-G2-AA3F-01 5 142434019 142434019 C T ARHGAP26 Missense_Mutation p.S434F 0.16 deleterious(0.04) possibly_damaging(0.788) TCGA-G2-AA3F-01 5 15928375 15928375 C T FBXL7 Silent p.R168R 0.31 TCGA-G2-AA3F-01 5 31526789 31526789 G C DROSHA Missense_Mutation p.P84R 0.24 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-G2-AA3F-01 5 453910 453913 CAGG - EXOC3 Frame_Shift_Del p.A265Ifs*17 0.28 TCGA-G2-AA3F-01 5 56161654 56161654 A T MAP3K1 Splice_Site p.X385_splice 0.24 TCGA-G2-AA3F-01 5 61778976 61778976 C G IPO11 Missense_Mutation p.Q333E 0.31 tolerated(0.33) benign(0.019) TCGA-G2-AA3F-01 5 63509792 63509792 G A RNF180 Silent p.Q213Q 0.53 TCGA-G2-AA3F-01 5 79854881 79854881 C T ANKRD34B Missense_Mutation p.D320N 0.12 tolerated(0.09) possibly_damaging(0.628) TCGA-G2-AA3F-01 5 83360583 83360583 G A EDIL3 Silent p.L296L 0.16 TCGA-G2-AA3F-01 6 101054639 101054639 C T ASCC3 Missense_Mutation p.R1674H 0.68 deleterious(0) probably_damaging(0.995) TCGA-G2-AA3F-01 6 117593776 117593776 A G VGLL2 3'UTR 0.63 TCGA-G2-AA3F-01 6 134303956 134303956 G A TBPL1 Missense_Mutation p.E74K 0.10 deleterious(0.03) benign(0.182) TCGA-G2-AA3F-01 6 26104215 26104215 G C HIST1H4C Missense_Mutation p.G14R 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-G2-AA3F-01 6 30671644 30671644 C T MDC1 Silent p.E1772E 0.37 TCGA-G2-AA3F-01 6 31604676 31604676 T G PRRC2A Missense_Mutation p.L2034R 0.13 unknown(0) TCGA-G2-AA3F-01 6 85466511 85466511 G T TBX18 Missense_Mutation p.P226T 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-G2-AA3F-01 6 86252970 86252970 A G SNX14 Missense_Mutation p.F440S 0.14 deleterious(0) probably_damaging(0.986) TCGA-G2-AA3F-01 7 111927047 111927047 G A ZNF277 Missense_Mutation p.E71K 0.20 tolerated(0.13) benign(0.141) TCGA-G2-AA3F-01 7 36194374 36194374 C T EEPD1 Silent p.L147L 0.35 TCGA-G2-AA3F-01 7 44800100 44800100 G A ZMIZ2 Missense_Mutation p.S383N 0.49 tolerated(0.25) benign(0.008) TCGA-G2-AA3F-01 7 72285991 72285991 C A TYW1B Nonsense_Mutation p.E69* 0.09 TCGA-G2-AA3F-01 7 91712796 91712796 A C AKAP9 Missense_Mutation p.T2825P 0.21 benign(0.088) TCGA-G2-AA3F-01 7 97933617 97933617 T C BAIAP2L1 Missense_Mutation p.D438G 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-G2-AA3F-01 8 101601156 101601156 C G SNX31 Missense_Mutation p.E344Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 8 120759045 120759045 G C TAF2 Missense_Mutation p.A1003G 0.28 deleterious(0.01) benign(0.11) TCGA-G2-AA3F-01 8 131414176 131414176 G A ASAP1 Missense_Mutation p.A5V 0.19 tolerated_low_confidence(0.08) unknown(0) TCGA-G2-AA3F-01 8 145153856 145153856 T C SHARPIN Silent p.P363P 0.38 TCGA-G2-AA3F-01 8 22033743 22033743 G A BMP1 Missense_Mutation p.R117H 0.23 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 8 23712225 23712225 G A STC1 5'UTR 0.62 TCGA-G2-AA3F-01 8 27303425 27303425 C A PTK2B Missense_Mutation p.H777N 0.52 tolerated(0.13) benign(0.152) TCGA-G2-AA3F-01 8 37963221 37963221 G C ASH2L Silent p.P51P 0.14 TCGA-G2-AA3F-01 8 42042656 42042657 - GTAG PLAT Frame_Shift_Ins p.V192Lfs*4 0.42 TCGA-G2-AA3F-01 8 42977774 42977774 C T POMK Silent p.H269H 0.71 TCGA-G2-AA3F-01 9 114090535 114090535 T C OR2K2 Missense_Mutation p.Y60C 0.37 deleterious(0) probably_damaging(0.999) TCGA-G2-AA3F-01 9 141016009 141016009 C A CACNA1B Missense_Mutation p.T2193K 0.45 deleterious(0) probably_damaging(0.998) TCGA-G2-AA3F-01 9 2115849 2115849 C A SMARCA2 Missense_Mutation p.R1162S 0.29 possibly_damaging(0.683) TCGA-G2-AA3F-01 X 125299271 125299271 G T DCAF12L2 Missense_Mutation p.R213S 0.89 deleterious(0) probably_damaging(0.982) TCGA-G2-AA3F-01 X 147743990 147743990 G C AFF2 Missense_Mutation p.A248P 0.34 tolerated(0.05) possibly_damaging(0.782) TCGA-G2-AA3F-01 X 15344106 15344106 T C PIGA Missense_Mutation p.I260V 0.88 tolerated(0.14) benign(0.015) TCGA-G2-AA3F-01 X 23693123 23693123 A G PRDX4 Missense_Mutation p.T126A 0.74 deleterious(0) possibly_damaging(0.906) TCGA-GC-A3BM-01 10 106916969 106916969 A T SORCS3 Missense_Mutation p.N519I 0.52 deleterious(0) probably_damaging(0.998) TCGA-GC-A3BM-01 10 118424359 118424359 C G C10orf82 Missense_Mutation p.R125T 0.45 deleterious(0) probably_damaging(0.995) TCGA-GC-A3BM-01 10 135020668 135020668 G A KNDC1 Missense_Mutation p.E1203K 0.33 deleterious(0) benign(0.354) TCGA-GC-A3BM-01 10 16883020 16883020 C T CUBN Silent p.A3230A 0.48 TCGA-GC-A3BM-01 10 27459681 27459681 C G MASTL Missense_Mutation p.S598C 0.29 deleterious(0.01) benign(0.027) TCGA-GC-A3BM-01 10 43623613 43623613 G C RET Missense_Mutation p.D1081H 0.32 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-GC-A3BM-01 10 50740776 50740776 G A ERCC6-PGBD3 Nonsense_Mutation p.Q79* 0.42 TCGA-GC-A3BM-01 10 72360386 72360386 C T PRF1 Silent p.A91A 0.57 TCGA-GC-A3BM-01 10 95351699 95351699 T C RBP4 3'UTR 0.37 TCGA-GC-A3BM-01 11 116633513 116633513 G A BUD13 Silent p.L264L 0.91 TCGA-GC-A3BM-01 11 16838384 16838384 C T PLEKHA7 Missense_Mutation p.G610E 0.91 tolerated(1) benign(0.04) TCGA-GC-A3BM-01 11 44296955 44296955 G A ALX4 Silent p.D240D 0.89 TCGA-GC-A3BM-01 11 59415362 59415362 C T PATL1 Silent p.Q586Q 0.39 TCGA-GC-A3BM-01 11 60264894 60264894 G T MS4A12 Missense_Mutation p.G35C 0.49 deleterious(0) probably_damaging(0.947) TCGA-GC-A3BM-01 11 65360904 65360905 CT - KCNK7 Intron 0.34 TCGA-GC-A3BM-01 11 71949104 71949104 G T INPPL1 Missense_Mutation p.G1191W 0.54 deleterious(0) benign(0.376) TCGA-GC-A3BM-01 11 73958134 73958134 A G PPME1 Silent p.R325R 0.44 TCGA-GC-A3BM-01 11 74009284 74009284 C G P4HA3 Missense_Mutation p.L230F 0.34 deleterious(0) probably_damaging(0.999) TCGA-GC-A3BM-01 11 92531924 92531924 C T FAT3 Silent p.P1915P 0.89 TCGA-GC-A3BM-01 12 110238434 110238434 T C TRPV4 Missense_Mutation p.Y281C 0.68 tolerated(0.12) benign(0.055) TCGA-GC-A3BM-01 12 13716716 13716716 G A GRIN2B Silent p.T1152T 0.66 TCGA-GC-A3BM-01 12 49433666 49433699 GGACAGGTAGGGGAGGGATCCGTCGGGTGCAGGT - KMT2D Frame_Shift_Del p.P2619Mfs*61 0.72 TCGA-GC-A3BM-01 12 49957275 49957275 C G MCRS1 Missense_Mutation p.Q217H 0.32 tolerated(0.1) benign(0.413) TCGA-GC-A3BM-01 12 57963097 57963097 G A KIF5A Missense_Mutation p.G293E 0.23 deleterious(0) probably_damaging(1) TCGA-GC-A3BM-01 12 81110945 81110945 C T MYF5 Nonsense_Mutation p.R35* 0.70 TCGA-GC-A3BM-01 13 111164350 111164350 C T COL4A2 Missense_Mutation p.R1651C 0.31 unknown(0) TCGA-GC-A3BM-01 13 23908464 23908464 C T SACS Missense_Mutation p.R3184H 0.46 probably_damaging(0.994) TCGA-GC-A3BM-01 13 25671775 25671775 C G PABPC3 Nonsense_Mutation p.S480* 0.35 TCGA-GC-A3BM-01 13 29012388 29012388 C T FLT1 Silent p.T161T 0.43 TCGA-GC-A3BM-01 13 96743176 96743176 C G HS6ST3 Silent p.V20V 0.39 TCGA-GC-A3BM-01 14 21108981 21108981 T C OR6S1 Silent p.P290P 0.43 TCGA-GC-A3BM-01 14 22521050 22521050 C T TRAV21 Missense_Mutation p.T24M 0.48 tolerated(0.09) benign(0.023) TCGA-GC-A3BM-01 14 22771978 22771978 G C TRAV39 Missense_Mutation p.D14H 0.59 tolerated(0.2) possibly_damaging(0.735) TCGA-GC-A3BM-01 14 53101795 53101798 AACA - GPR137C Frame_Shift_Del p.N418Ifs*7 0.22 TCGA-GC-A3BM-01 14 55817949 55817949 G C FBXO34 Missense_Mutation p.D281H 0.52 deleterious(0) probably_damaging(0.999) TCGA-GC-A3BM-01 15 25969114 25969114 G A ATP10A Missense_Mutation p.P345L 0.37 tolerated(0.08) possibly_damaging(0.582) TCGA-GC-A3BM-01 15 27126006 27126006 C T GABRA5 Missense_Mutation p.P34S 0.36 tolerated(0.23) benign(0.003) TCGA-GC-A3BM-01 15 56388173 56388173 C T RFX7 Missense_Mutation p.E585K 0.60 tolerated_low_confidence(0.24) benign(0.304) TCGA-GC-A3BM-01 15 59383255 59383255 C T RNF111 Intron 0.45 TCGA-GC-A3BM-01 15 76496330 76496330 C T C15orf27 Missense_Mutation p.P424S 0.41 tolerated_low_confidence(0.58) benign(0.003) TCGA-GC-A3BM-01 16 14339510 14339510 A T MKL2 Missense_Mutation p.D402V 0.39 deleterious(0) probably_damaging(0.935) TCGA-GC-A3BM-01 16 67289057 67289057 C T SLC9A5 Silent p.G208G 0.47 TCGA-GC-A3BM-01 16 74446702 74446702 A C CLEC18B Missense_Mutation p.C251W 0.11 deleterious(0) probably_damaging(1) TCGA-GC-A3BM-01 17 10398335 10398335 C T MYH1 Silent p.T1793T 0.91 TCGA-GC-A3BM-01 17 18088053 18088053 G A ALKBH5 Missense_Mutation p.E166K 0.94 tolerated(0.66) benign(0.029) TCGA-GC-A3BM-01 17 36492872 36492872 G A GPR179 Missense_Mutation p.R406C 0.45 deleterious(0) probably_damaging(0.991) TCGA-GC-A3BM-01 17 40556892 40556892 C T PTRF Missense_Mutation p.R329H 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-GC-A3BM-01 17 45247383 45247383 A C CDC27 Missense_Mutation p.S93A 0.05 tolerated(1) benign(0.001) TCGA-GC-A3BM-01 17 46053301 46053301 G A CDK5RAP3 Silent p.E240E 0.35 TCGA-GC-A3BM-01 17 54969173 54969173 G T TRIM25 Missense_Mutation p.A594D 0.46 deleterious(0.01) possibly_damaging(0.493) TCGA-GC-A3BM-01 17 56321382 56321382 C G LPO Missense_Mutation p.S35C 0.27 tolerated(0.18) benign(0.01) TCGA-GC-A3BM-01 17 56342246 56342246 G A LPO Missense_Mutation p.R477H 0.43 deleterious(0.01) probably_damaging(1) TCGA-GC-A3BM-01 17 72368159 72368159 C T GPR142 Missense_Mutation p.S270L 0.47 deleterious(0.05) probably_damaging(0.976) TCGA-GC-A3BM-01 19 13409644 13409644 G A CACNA1A Missense_Mutation p.R935W 0.44 possibly_damaging(0.835) TCGA-GC-A3BM-01 19 2151334 2151334 C G AP3D1 5'UTR 0.45 TCGA-GC-A3BM-01 19 22272043 22272043 C T ZNF257 Silent p.N497N 0.46 TCGA-GC-A3BM-01 19 35451871 35451871 T C ZNF792 Missense_Mutation p.I21V 0.43 tolerated(1) benign(0.017) TCGA-GC-A3BM-01 19 35551678 35551678 C T HPN Silent p.N256N 0.15 TCGA-GC-A3BM-01 19 35613967 35613967 C A FXYD3 Intron 0.57 TCGA-GC-A3BM-01 19 39299381 39299381 G A LGALS4 Intron 0.56 TCGA-GC-A3BM-01 19 39971574 39971574 G A TIMM50 Silent p.A130A 0.26 TCGA-GC-A3BM-01 19 45783636 45783636 G A MARK4 Silent p.V337V 0.43 TCGA-GC-A3BM-01 19 47423804 47423804 C - ARHGAP35 Frame_Shift_Del p.D624Efs*4 0.34 TCGA-GC-A3BM-01 19 51883406 51883406 C T LIM2 3'UTR 0.48 TCGA-GC-A3BM-01 19 5212395 5212395 G A PTPRS Silent p.V1574V 0.18 TCGA-GC-A3BM-01 19 52394437 52394437 G C ZNF649 Missense_Mutation p.H318D 0.42 deleterious(0) possibly_damaging(0.461) TCGA-GC-A3BM-01 19 55815073 55815073 C T BRSK1 Missense_Mutation p.R389C 0.43 deleterious(0) possibly_damaging(0.689) TCGA-GC-A3BM-01 19 8386243 8386243 C G NDUFA7 5'UTR 0.47 TCGA-GC-A3BM-01 19 846267 846267 G A PRTN3 Missense_Mutation p.D164N 0.50 tolerated(0.46) benign(0.003) TCGA-GC-A3BM-01 19 9076790 9076790 A T MUC16 Silent p.T3552T 0.40 TCGA-GC-A3BM-01 1 100701061 100701061 C T DBT Missense_Mutation p.R61H 0.10 tolerated(0.56) benign(0.005) TCGA-GC-A3BM-01 1 1290868 1290868 G C MXRA8 Missense_Mutation p.S113W 0.60 deleterious(0) probably_damaging(0.937) TCGA-GC-A3BM-01 1 151141526 151141526 G A SCNM1 Missense_Mutation p.D220N 0.44 deleterious(0) probably_damaging(0.999) TCGA-GC-A3BM-01 1 152188366 152188366 G A HRNR Silent p.H1913H 0.06 TCGA-GC-A3BM-01 1 157739894 157739894 G A FCRL2 Silent p.I119I 0.49 TCGA-GC-A3BM-01 1 158585162 158585162 C T SPTA1 Missense_Mutation p.R2211H 0.54 tolerated(0.14) benign(0.099) TCGA-GC-A3BM-01 1 160769712 160769712 T A LY9 Silent p.I98I 0.44 TCGA-GC-A3BM-01 1 161654755 161654755 G A RPL31P11 RNA 0.49 TCGA-GC-A3BM-01 1 161789557 161789557 G A ATF6 Silent p.L348L 0.43 TCGA-GC-A3BM-01 1 178063703 178063703 G A RASAL2 Missense_Mutation p.D26N 0.62 deleterious_low_confidence(0.01) benign(0.042) TCGA-GC-A3BM-01 1 205210828 205210828 G A TMCC2 Missense_Mutation p.A135T 0.33 tolerated_low_confidence(0.06) possibly_damaging(0.825) TCGA-GC-A3BM-01 1 223984287 223984287 C T TP53BP2 Missense_Mutation p.G652S 0.31 deleterious(0) probably_damaging(0.999) TCGA-GC-A3BM-01 1 228399647 228399647 C T OBSCN Missense_Mutation p.R55C 0.65 probably_damaging(0.999) TCGA-GC-A3BM-01 1 237756779 237756779 T A RYR2 Missense_Mutation p.Y1427N 0.20 possibly_damaging(0.705) TCGA-GC-A3BM-01 1 244868861 244868861 C G DESI2 Missense_Mutation p.L119V 0.44 deleterious(0.04) probably_damaging(0.923) TCGA-GC-A3BM-01 1 248084484 248084484 G A OR2T8 Silent p.T55T 0.37 TCGA-GC-A3BM-01 1 3417236 3417236 G A MEGF6 Silent p.L890L 0.36 TCGA-GC-A3BM-01 1 46746887 46746887 G A LRRC41 Missense_Mutation p.R556C 0.33 tolerated(0.05) possibly_damaging(0.835) TCGA-GC-A3BM-01 1 6158568 6158568 C T KCNAB2 Silent p.S394S 0.33 TCGA-GC-A3BM-01 1 70504295 70504295 G A LRRC7 Missense_Mutation p.V892I 0.38 tolerated_low_confidence(0.86) benign(0.001) TCGA-GC-A3BM-01 1 84399296 84399296 G A TTLL7 Silent p.L348L 0.48 TCGA-GC-A3BM-01 1 90058386 90058386 G - LRRC8B Frame_Shift_Del p.N735Ifs*3 0.31 TCGA-GC-A3BM-01 1 984698 984698 C T AGRN Missense_Mutation p.R1461W 0.36 deleterious(0) probably_damaging(0.995) TCGA-GC-A3BM-01 20 43142655 43142655 T C SERINC3 Silent p.S22S 0.62 TCGA-GC-A3BM-01 20 60913289 60913289 C T LAMA5 Silent p.Q585Q 0.44 TCGA-GC-A3BM-01 21 43176836 43176836 A C RIPK4 Missense_Mutation p.L108R 0.49 deleterious(0) probably_damaging(0.999) TCGA-GC-A3BM-01 21 46554664 46554664 T C ADARB1 Intron 0.31 TCGA-GC-A3BM-01 21 47349884 47349884 C G PCBP3 Silent p.L257L 0.35 TCGA-GC-A3BM-01 22 21213484 21213484 G A SNAP29 Missense_Mutation p.R29Q 0.26 tolerated(0.57) benign(0.054) TCGA-GC-A3BM-01 22 36698721 36698722 CT - MYH9 Frame_Shift_Del p.K797Nfs*103 0.46 TCGA-GC-A3BM-01 22 41523722 41523723 AC - EP300 Frame_Shift_Del p.H381Lfs*29 0.40 TCGA-GC-A3BM-01 2 11911614 11911614 G A LPIN1 Silent p.T184T 0.17 TCGA-GC-A3BM-01 2 128380819 128380819 G A MYO7B Missense_Mutation p.A1204T 0.22 deleterious(0.01) benign(0.044) TCGA-GC-A3BM-01 2 168104956 168104956 G A XIRP2 Missense_Mutation p.D2352N 0.26 benign(0.178) TCGA-GC-A3BM-01 2 179579099 179579099 G A TTN Missense_Mutation p.P8801L 0.67 TCGA-GC-A3BM-01 2 187626350 187626350 A T FAM171B Missense_Mutation p.L427F 0.53 tolerated(0.29) benign(0.039) TCGA-GC-A3BM-01 2 198281605 198281605 C T SF3B1 Missense_Mutation p.A176T 0.30 tolerated(0.49) benign(0.104) TCGA-GC-A3BM-01 2 211019320 211019320 G A KANSL1L 5'UTR 0.59 TCGA-GC-A3BM-01 2 32379674 32379674 G C SPAST 3'UTR 0.67 TCGA-GC-A3BM-01 2 69575328 69575328 C T GFPT1 Silent p.Q328Q 0.52 TCGA-GC-A3BM-01 2 89265917 89265917 G C IGKV1-6 Missense_Mutation p.A72G 0.46 tolerated(0.42) benign(0.001) TCGA-GC-A3BM-01 2 97779652 97779652 A G ANKRD36 Missense_Mutation p.N59S 0.53 deleterious(0) benign(0.053) TCGA-GC-A3BM-01 3 126916142 126916142 C T C3orf56 Missense_Mutation p.S205L 0.87 deleterious(0.01) possibly_damaging(0.504) TCGA-GC-A3BM-01 3 129150350 129150350 T C MBD4 Silent p.L579L 0.93 TCGA-GC-A3BM-01 3 15752761 15752761 C T ANKRD28 Missense_Mutation p.D402N 0.90 deleterious(0) probably_damaging(0.999) TCGA-GC-A3BM-01 3 42632352 42632352 G C SS18L2 5'UTR 0.90 TCGA-GC-A3BM-01 3 49927946 49927946 G A MST1R Missense_Mutation p.T1261I 0.95 deleterious(0.05) benign(0.293) TCGA-GC-A3BM-01 3 49928679 49928679 G A MST1R Silent p.L1199L 0.97 TCGA-GC-A3BM-01 3 49928719 49928719 G A MST1R Silent p.L1185L 0.94 TCGA-GC-A3BM-01 3 49929255 49929255 G A MST1R Silent p.V1096V 0.92 TCGA-GC-A3BM-01 4 100532349 100532349 C T MTTP Missense_Mutation p.R607C 0.34 deleterious(0.03) possibly_damaging(0.899) TCGA-GC-A3BM-01 4 155527888 155527888 G A FGG Silent p.H366H 0.43 TCGA-GC-A3BM-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.67 deleterious(0.01) possibly_damaging(0.594) TCGA-GC-A3BM-01 4 185684329 185684329 C T ACSL1 Missense_Mutation p.E505K 0.26 tolerated(0.15) benign(0.048) TCGA-GC-A3BM-01 4 2954005 2954006 - A NOP14 Frame_Shift_Ins p.E290Gfs*3 0.21 TCGA-GC-A3BM-01 4 38051478 38051478 G C TBC1D1 Missense_Mutation p.M623I 0.69 tolerated(0.27) benign(0.003) TCGA-GC-A3BM-01 4 79205678 79205678 T C FRAS1 Missense_Mutation p.Y459H 0.39 probably_damaging(0.982) TCGA-GC-A3BM-01 4 96761293 96761293 G A PDHA2 5'UTR 0.20 TCGA-GC-A3BM-01 5 102442494 102442494 C T GIN1 Missense_Mutation p.G87S 0.67 deleterious(0.01) probably_damaging(0.979) TCGA-GC-A3BM-01 5 132150606 132150606 G A SOWAHA Silent p.S431S 0.46 TCGA-GC-A3BM-01 5 133326826 133326826 G A VDAC1 Missense_Mutation p.S46L 0.24 tolerated(0.15) probably_damaging(0.983) TCGA-GC-A3BM-01 5 13753602 13753602 A C DNAH5 Missense_Mutation p.F3538V 0.24 possibly_damaging(0.637) TCGA-GC-A3BM-01 5 140201632 140201632 G A PCDHA5 Missense_Mutation p.R91Q 0.05 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GC-A3BM-01 5 65118647 65118647 G A NLN Silent p.G673G 0.29 TCGA-GC-A3BM-01 5 68404192 68404192 G C SLC30A5 Missense_Mutation p.E126Q 0.47 tolerated(0.08) probably_damaging(0.996) TCGA-GC-A3BM-01 5 79837636 79837636 C G FAM151B Missense_Mutation p.I272M 0.52 tolerated(0.09) benign(0.203) TCGA-GC-A3BM-01 5 79837648 79837648 C T FAM151B Silent p.L276L 0.50 TCGA-GC-A3BM-01 6 117045538 117045538 G A KPNA5 Silent p.Q333Q 0.30 TCGA-GC-A3BM-01 6 13588578 13588578 G A SIRT5 Missense_Mutation p.R44Q 0.51 tolerated(0.13) benign(0.272) TCGA-GC-A3BM-01 6 159654640 159654640 G T FNDC1 Missense_Mutation p.R1032S 0.27 deleterious_low_confidence(0) unknown(0) TCGA-GC-A3BM-01 6 35287672 35287672 G A DEF6 Missense_Mutation p.A487T 0.44 tolerated(1) benign(0) TCGA-GC-A3BM-01 6 43495459 43495459 C T XPO5 Missense_Mutation p.E945K 0.43 tolerated(0.25) benign(0.046) TCGA-GC-A3BM-01 6 70447864 70447864 C G LMBRD1 Missense_Mutation p.L202F 0.42 deleterious(0.01) possibly_damaging(0.882) TCGA-GC-A3BM-01 6 90421882 90421882 G A MDN1 Silent p.Y2508Y 0.44 TCGA-GC-A3BM-01 7 111981066 111981066 G A ZNF277 Silent p.S383S 0.45 TCGA-GC-A3BM-01 7 144077079 144077079 G A ARHGEF5 Missense_Mutation p.R1575H 0.45 deleterious(0) possibly_damaging(0.893) TCGA-GC-A3BM-01 7 147844772 147844772 G A CNTNAP2 Missense_Mutation p.R915H 0.45 tolerated(0.16) possibly_damaging(0.842) TCGA-GC-A3BM-01 7 151843779 151843788 TTCTCACACA - KMT2C Frame_Shift_Del p.C4643Kfs*13 0.35 TCGA-GC-A3BM-01 7 21751477 21751477 C A DNAH11 Missense_Mutation p.P2335T 0.51 possibly_damaging(0.905) TCGA-GC-A3BM-01 7 72848451 72848451 G A FZD9 Silent p.P38P 0.54 TCGA-GC-A3BM-01 8 103305851 103305851 G A UBR5 Missense_Mutation p.S1524L 0.35 tolerated(0.1) benign(0.344) TCGA-GC-A3BM-01 8 139606405 139606405 C T COL22A1 Silent p.A1490A 0.40 TCGA-GC-A3BM-01 8 26627912 26627912 G T ADRA1A Missense_Mutation p.F385L 0.46 tolerated_low_confidence(0.36) benign(0.07) TCGA-GC-A3BM-01 8 41504183 41504183 G A NKX6-3 Missense_Mutation p.R65W 0.36 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-GC-A3BM-01 8 61712986 61712986 A G CHD7 Missense_Mutation p.T760A 0.49 probably_damaging(0.952) TCGA-GC-A3BM-01 8 75944606 75944606 A G CRISPLD1 3'UTR 0.64 TCGA-GC-A3BM-01 9 100459547 100459547 C T XPA Missense_Mutation p.E10K 0.51 tolerated_low_confidence(0.06) unknown(0) TCGA-GC-A3BM-01 9 131379944 131379944 G C SPTAN1 Missense_Mutation p.E1795Q 0.82 tolerated(0.77) benign(0.363) TCGA-GC-A3BM-01 9 131379988 131379988 G T SPTAN1 Missense_Mutation p.K1809N 0.83 deleterious(0.05) probably_damaging(0.995) TCGA-GC-A3BM-01 9 131380380 131380380 G T SPTAN1 Missense_Mutation p.A1865S 0.91 tolerated(0.31) benign(0.029) TCGA-GC-A3BM-01 9 131381208 131381211 GAAG AAA SPTAN1 Frame_Shift_Del p.E1887Kfs*9 0.73 TCGA-GC-A3BM-01 9 131381226 131381226 G A SPTAN1 Missense_Mutation p.E1893K 0.86 deleterious(0) probably_damaging(1) TCGA-GC-A3BM-01 9 132565654 132565654 G A TOR1B Missense_Mutation p.E55K 0.92 tolerated(0.14) possibly_damaging(0.737) TCGA-GC-A3BM-01 9 132565666 132565666 G A TOR1B Missense_Mutation p.E59K 0.88 tolerated(0.83) benign(0.005) TCGA-GC-A3BM-01 9 19573435 19573435 C T SLC24A2 Missense_Mutation p.D421N 0.74 tolerated(0.28) benign(0) TCGA-GC-A3BM-01 9 21971092 21971093 CC - CDKN2A Frame_Shift_Del p.G89Lfs*30 0.64 TCGA-GC-A3BM-01 9 35061086 35061086 G A VCP Missense_Mutation p.L429F 0.51 tolerated(0.24) benign(0.076) TCGA-GC-A3BM-01 9 37768130 37768130 G C TRMT10B Missense_Mutation p.D160H 0.43 tolerated(0.08) benign(0.021) TCGA-GC-A3BM-01 9 734746 734746 A G KANK1 Splice_Site p.X1082_splice 0.54 TCGA-GC-A3BM-01 X 109697193 109697193 A G RGAG1 Silent p.G1116G 0.93 TCGA-GC-A3BM-01 X 114141244 114141244 G A HTR2C Missense_Mutation p.V215I 0.92 tolerated(0.46) benign(0.053) TCGA-GC-A3BM-01 X 77912861 77912861 C T ZCCHC5 Missense_Mutation p.D353N 0.88 tolerated(0.89) benign(0.018) TCGA-GC-A3BM-01 X 90691635 90691635 G A PABPC5 Silent p.E353E 0.93 TCGA-GC-A3I6-01 10 102896708 102896708 C G TLX1 3'UTR 0.60 TCGA-GC-A3I6-01 10 103534601 103534601 G C FGF8 Silent p.L75L 0.30 TCGA-GC-A3I6-01 10 105903255 105903255 C T WDR96 Missense_Mutation p.E1363K 0.29 deleterious(0.01) benign(0.358) TCGA-GC-A3I6-01 10 106960946 106960946 G A SORCS3 Silent p.L732L 0.33 TCGA-GC-A3I6-01 10 108371675 108371675 C T SORCS1 Silent p.L1009L 0.19 TCGA-GC-A3I6-01 10 108923757 108923757 G T SORCS1 Silent p.A176A 0.33 TCGA-GC-A3I6-01 10 112349666 112349666 G A SMC3 Missense_Mutation p.E476K 0.36 deleterious(0) possibly_damaging(0.823) TCGA-GC-A3I6-01 10 122648591 122648591 G A WDR11 Missense_Mutation p.G708E 0.35 deleterious(0.01) possibly_damaging(0.603) TCGA-GC-A3I6-01 10 134750515 134750515 C G TTC40 Missense_Mutation p.K235N 0.20 tolerated(0.49) benign(0.29) TCGA-GC-A3I6-01 10 135032565 135032565 G C KNDC1 Missense_Mutation p.E1611Q 0.22 deleterious(0) possibly_damaging(0.469) TCGA-GC-A3I6-01 10 48414156 48414156 C T GDF2 Missense_Mutation p.D238N 0.39 tolerated(0.26) benign(0.36) TCGA-GC-A3I6-01 10 50952768 50952768 C T OGDHL Missense_Mutation p.E554K 0.32 deleterious(0.04) possibly_damaging(0.6) TCGA-GC-A3I6-01 10 70446167 70446167 G A TET1 Missense_Mutation p.E1703K 0.28 deleterious(0.03) benign(0.399) TCGA-GC-A3I6-01 10 71008378 71008378 G A HKDC1 Silent p.Q488Q 0.32 TCGA-GC-A3I6-01 10 94214104 94214104 G A IDE 3'UTR 0.41 TCGA-GC-A3I6-01 11 118257262 118257262 A G UBE4A Missense_Mutation p.Q848R 0.23 tolerated(0.38) benign(0.007) TCGA-GC-A3I6-01 11 11986170 11986170 G A DKK3 Silent p.I298I 0.57 TCGA-GC-A3I6-01 11 125889642 125889642 G A CDON Missense_Mutation p.S123L 0.30 tolerated(0.18) benign(0.013) TCGA-GC-A3I6-01 11 57135555 57135555 C T P2RX3 Silent p.F305F 0.14 TCGA-GC-A3I6-01 11 57188794 57188794 G A SLC43A3 Silent p.I138I 0.36 TCGA-GC-A3I6-01 11 62297946 62297946 C T AHNAK Missense_Mutation p.E1315K 0.04 possibly_damaging(0.889) TCGA-GC-A3I6-01 11 65124162 65124162 C - TIGD3 Frame_Shift_Del p.L296Cfs*92 0.23 TCGA-GC-A3I6-01 11 71714661 71714661 C T IL18BP 3'Flank 0.45 TCGA-GC-A3I6-01 11 74340342 74340342 C G POLD3 Missense_Mutation p.P327R 0.05 deleterious(0.04) probably_damaging(1) TCGA-GC-A3I6-01 11 84028123 84028123 C G DLG2 Intron 0.42 TCGA-GC-A3I6-01 11 89405073 89405073 G A FOLH1B RNA 0.20 TCGA-GC-A3I6-01 12 101442180 101442180 G A ANO4 Splice_Site p.X403_splice 0.26 TCGA-GC-A3I6-01 12 102069129 102069129 C G MYBPC1 Missense_Mutation p.L950V 0.28 tolerated(0.25) probably_damaging(0.999) TCGA-GC-A3I6-01 12 14649244 14649244 C T ATF7IP Silent p.L1120L 0.32 TCGA-GC-A3I6-01 12 14923749 14923749 C T HIST4H4 Silent p.A90A 0.52 TCGA-GC-A3I6-01 12 33021978 33021978 C T PKP2 Missense_Mutation p.M351I 0.50 deleterious(0.01) benign(0.297) TCGA-GC-A3I6-01 12 49435941 49435941 G A KMT2D Nonsense_Mutation p.Q2014* 0.48 TCGA-GC-A3I6-01 12 53460407 53460407 A T SPRYD3 Missense_Mutation p.I324N 0.32 deleterious(0) possibly_damaging(0.678) TCGA-GC-A3I6-01 12 56720165 56720165 G C PAN2 Missense_Mutation p.L431V 0.20 deleterious(0) probably_damaging(0.996) TCGA-GC-A3I6-01 12 94658921 94658921 G A PLXNC1 Missense_Mutation p.V1173M 0.44 deleterious(0) probably_damaging(0.999) TCGA-GC-A3I6-01 13 114758015 114758015 C T RASA3 Missense_Mutation p.E731K 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-GC-A3I6-01 13 39266378 39266378 G A FREM2 Missense_Mutation p.D1633N 0.27 tolerated(0.19) benign(0.002) TCGA-GC-A3I6-01 13 45580434 45580434 C G GPALPP1 Missense_Mutation p.P107A 0.23 tolerated(0.44) benign(0.071) TCGA-GC-A3I6-01 13 52544680 52544680 C T ATP7B Missense_Mutation p.M497I 0.36 deleterious(0.01) possibly_damaging(0.681) TCGA-GC-A3I6-01 13 77656085 77656085 G A MYCBP2 Missense_Mutation p.H3656Y 0.42 probably_damaging(0.921) TCGA-GC-A3I6-01 13 94958333 94958333 G C GPC6 Missense_Mutation p.E370Q 0.37 tolerated(0.11) probably_damaging(0.917) TCGA-GC-A3I6-01 14 100166436 100166436 G C CYP46A1 Silent p.R147R 0.17 TCGA-GC-A3I6-01 14 101193373 101193373 C T DLK1 5'UTR 0.38 TCGA-GC-A3I6-01 14 102729905 102729905 C T MOK Missense_Mutation p.M87I 0.24 deleterious(0.03) benign(0.445) TCGA-GC-A3I6-01 14 103369714 103369714 G A TRAF3 Silent p.V361V 0.43 TCGA-GC-A3I6-01 14 104640516 104640516 T A KIF26A Missense_Mutation p.S688T 0.36 deleterious(0.04) benign(0.052) TCGA-GC-A3I6-01 14 105409457 105409457 C T AHNAK2 Missense_Mutation p.D4111N 0.05 possibly_damaging(0.77) TCGA-GC-A3I6-01 14 106791041 106791041 C TA IGHV3-30 Frame_Shift_Ins p.R106Kfs*3 0.11 TCGA-GC-A3I6-01 14 107211238 107211238 G C IGHV3-73 Silent p.V17V 0.52 TCGA-GC-A3I6-01 14 21502251 21502251 G A RNASE13 Missense_Mutation p.S66L 0.55 tolerated(0.08) benign(0.056) TCGA-GC-A3I6-01 14 21859165 21859165 C T CHD8 Missense_Mutation p.E2375K 0.17 deleterious(0) benign(0.008) TCGA-GC-A3I6-01 14 51561204 51561204 C T TRIM9 Missense_Mutation p.E152K 0.26 tolerated(0.09) possibly_damaging(0.566) TCGA-GC-A3I6-01 14 60622822 60622822 C G DHRS7 Missense_Mutation p.G61A 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-GC-A3I6-01 14 71445358 71445358 C T PCNX Silent p.V768V 0.42 TCGA-GC-A3I6-01 14 90778760 90778760 G C NRDE2 Missense_Mutation p.L179V 0.27 deleterious(0) probably_damaging(0.925) TCGA-GC-A3I6-01 14 96852000 96852000 G C GSKIP Missense_Mutation p.L133F 0.52 tolerated(0.08) probably_damaging(0.998) TCGA-GC-A3I6-01 15 25959383 25959383 C T ATP10A Silent p.R594R 0.42 TCGA-GC-A3I6-01 15 48624423 48624423 C T DUT Intron 0.41 TCGA-GC-A3I6-01 15 54003115 54003115 C T WDR72 Missense_Mutation p.R298K 0.47 tolerated(1) benign(0.002) TCGA-GC-A3I6-01 16 11076791 11076791 G T CLEC16A Silent p.L338L 0.19 TCGA-GC-A3I6-01 16 16180769 16180769 C T ABCC1 Missense_Mutation p.P794L 0.22 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 16 20344666 20344666 G T UMOD Silent p.L631L 0.17 TCGA-GC-A3I6-01 16 22441186 22441186 C T RRN3P3 RNA 0.22 TCGA-GC-A3I6-01 16 2946429 2946429 G C FLYWCH2 5'UTR 0.33 TCGA-GC-A3I6-01 16 3294272 3294272 C T MEFV Missense_Mutation p.E581K 0.43 deleterious(0.03) probably_damaging(0.931) TCGA-GC-A3I6-01 16 68863653 68863653 C G CDH1 Missense_Mutation p.L798V 0.19 deleterious(0.01) benign(0.369) TCGA-GC-A3I6-01 16 82183009 82183009 C A MPHOSPH6 Splice_Site p.X86_splice 0.49 TCGA-GC-A3I6-01 16 87760397 87760397 C T KLHDC4 Missense_Mutation p.V245I 0.31 tolerated(0.76) benign(0.009) TCGA-GC-A3I6-01 16 89351818 89351818 T C ANKRD11 Missense_Mutation p.N378D 0.34 benign(0) TCGA-GC-A3I6-01 17 1631646 1631647 CG T WDR81 Frame_Shift_Del p.V1132Wfs*15 0.28 TCGA-GC-A3I6-01 17 16735627 16735627 C T KRT16P2 RNA 0.19 TCGA-GC-A3I6-01 17 1675193 1675193 C T SERPINF1 Missense_Mutation p.A156V 0.39 tolerated(0.16) benign(0.158) TCGA-GC-A3I6-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.50 TCGA-GC-A3I6-01 17 26890869 26890869 C T PIGS Missense_Mutation p.E115K 0.24 deleterious(0.03) possibly_damaging(0.558) TCGA-GC-A3I6-01 17 27935029 27935029 G A ANKRD13B Silent p.R92R 0.28 TCGA-GC-A3I6-01 17 29162311 29162311 G A ATAD5 Missense_Mutation p.M404I 0.20 deleterious(0) benign(0.371) TCGA-GC-A3I6-01 17 29162605 29162605 G C ATAD5 Missense_Mutation p.K502N 0.24 tolerated(0.06) benign(0.046) TCGA-GC-A3I6-01 17 29162843 29162843 G A ATAD5 Missense_Mutation p.E582K 0.20 tolerated(0.09) benign(0.018) TCGA-GC-A3I6-01 17 29533336 29533336 C T NF1 Missense_Mutation p.L447F 0.31 deleterious(0.01) possibly_damaging(0.543) TCGA-GC-A3I6-01 17 29557904 29557904 C G NF1 Nonsense_Mutation p.S1053* 0.17 TCGA-GC-A3I6-01 17 31322626 31322626 C T SPACA3 Silent p.L78L 0.25 TCGA-GC-A3I6-01 17 3352316 3352316 G C SPATA22 Missense_Mutation p.Q153E 0.29 deleterious(0.04) possibly_damaging(0.694) TCGA-GC-A3I6-01 17 40762134 40762134 G C TUBG1 Missense_Mutation p.E20Q 0.33 tolerated(0.34) possibly_damaging(0.63) TCGA-GC-A3I6-01 17 40963765 40963765 C G BECN1 Missense_Mutation p.K364N 0.31 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 17 41958843 41958843 C A MPP2 Missense_Mutation p.D266Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-GC-A3I6-01 17 4905368 4905368 C G KIF1C Silent p.L126L 0.41 TCGA-GC-A3I6-01 17 56349013 56349013 C T MPO Intron 0.45 TCGA-GC-A3I6-01 17 61566090 61566090 G C ACE Missense_Mutation p.R796T 0.38 tolerated(0.06) benign(0.048) TCGA-GC-A3I6-01 17 65141908 65141908 C T HELZ Missense_Mutation p.G907E 0.15 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 17 68171221 68171221 C T KCNJ2 Missense_Mutation p.S14L 0.46 tolerated(0.06) benign(0.197) TCGA-GC-A3I6-01 17 76967650 76967650 C A LGALS3BP 3'UTR 0.42 TCGA-GC-A3I6-01 17 7722612 7722612 C T DNAH2 Missense_Mutation p.S3634L 0.22 probably_damaging(0.971) TCGA-GC-A3I6-01 18 40854029 40854029 G T SYT4 Missense_Mutation p.T122N 0.31 tolerated(0.59) benign(0.031) TCGA-GC-A3I6-01 18 5394743 5394743 G A EPB41L3 Missense_Mutation p.S1068L 0.22 tolerated(0.46) possibly_damaging(0.872) TCGA-GC-A3I6-01 18 66504371 66504371 G A CCDC102B Missense_Mutation p.R124K 0.38 deleterious(0.04) possibly_damaging(0.837) TCGA-GC-A3I6-01 18 74536229 74536229 G A ZNF236 5'UTR 0.32 TCGA-GC-A3I6-01 19 10270402 10270402 G C DNMT1 Missense_Mutation p.I404M 0.21 deleterious(0) benign(0.346) TCGA-GC-A3I6-01 19 11916930 11916930 G C ZNF491 Missense_Mutation p.R54S 0.31 tolerated(0.24) benign(0.125) TCGA-GC-A3I6-01 19 12256076 12256076 G T ZNF625 3'Flank 0.19 TCGA-GC-A3I6-01 19 12256085 12256085 C A ZNF625 3'UTR 0.18 TCGA-GC-A3I6-01 19 20727612 20727612 G C ZNF737 Nonsense_Mutation p.S466* 0.33 TCGA-GC-A3I6-01 19 36259446 36259446 G C C19orf55 3'UTR 0.42 TCGA-GC-A3I6-01 19 3735874 3735874 C G TJP3 Silent p.P365P 0.31 TCGA-GC-A3I6-01 19 38881044 38881044 C T SPRED3 Silent p.V34V 0.33 TCGA-GC-A3I6-01 19 40928872 40928872 G C SERTAD1 Silent p.L194L 0.36 TCGA-GC-A3I6-01 19 41518309 41518309 G C CYP2B6 Missense_Mutation p.Q357H 0.36 deleterious(0) probably_damaging(0.996) TCGA-GC-A3I6-01 19 51470539 51470539 C T KLK6 Missense_Mutation p.C28Y 0.29 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 19 53282081 53282081 G A ZNF600 Intron 0.29 TCGA-GC-A3I6-01 19 53958360 53958360 C A ZNF761 RNA 0.31 TCGA-GC-A3I6-01 19 54803053 54803053 C T LILRA3 Nonsense_Mutation p.W208* 0.50 TCGA-GC-A3I6-01 19 55494608 55494608 C G NLRP2 Missense_Mutation p.F514L 0.39 tolerated(0.14) benign(0.039) TCGA-GC-A3I6-01 19 58863655 58863655 C G A1BG Missense_Mutation p.E203Q 0.33 deleterious(0.03) probably_damaging(0.943) TCGA-GC-A3I6-01 1 144879256 144879256 C A PDE4DIP Silent p.L1398L 0.15 TCGA-GC-A3I6-01 1 144882724 144882724 G A PDE4DIP Nonsense_Mutation p.Q1099* 0.16 TCGA-GC-A3I6-01 1 150444774 150444774 G A RPRD2 Missense_Mutation p.R1117K 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-GC-A3I6-01 1 150679139 150679139 G A HORMAD1 Nonsense_Mutation p.R232* 0.22 TCGA-GC-A3I6-01 1 151678328 151678328 C T CELF3 Missense_Mutation p.D414N 0.29 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 1 154420627 154420627 G A IL6R Missense_Mutation p.E326K 0.38 tolerated(0.38) benign(0.007) TCGA-GC-A3I6-01 1 16375654 16375654 C G CLCNKB Missense_Mutation p.S232C 0.27 deleterious(0) probably_damaging(0.964) TCGA-GC-A3I6-01 1 165398029 165398029 G T RXRG Missense_Mutation p.S75Y 0.37 deleterious(0.03) probably_damaging(0.99) TCGA-GC-A3I6-01 1 19204070 19204070 G A ALDH4A1 Missense_Mutation p.S326L 0.11 deleterious(0) probably_damaging(0.961) TCGA-GC-A3I6-01 1 207196604 207196604 C T C1orf116 Missense_Mutation p.E169K 0.41 tolerated(0.53) benign(0.013) TCGA-GC-A3I6-01 1 235331917 235331917 C T ARID4B Missense_Mutation p.A1288T 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-GC-A3I6-01 1 24664503 24664503 G A GRHL3 Missense_Mutation p.D288N 0.33 tolerated(0.16) possibly_damaging(0.869) TCGA-GC-A3I6-01 1 247151490 247151490 C T ZNF695 Silent p.V109V 0.32 TCGA-GC-A3I6-01 1 27216470 27216470 C T GPN2 Missense_Mutation p.V40M 0.19 deleterious(0) probably_damaging(0.989) TCGA-GC-A3I6-01 1 34208906 34208906 C T CSMD2 Silent p.K676K 0.21 TCGA-GC-A3I6-01 1 38289456 38289456 G A MTF1 Missense_Mutation p.S366L 0.34 tolerated(0.12) possibly_damaging(0.504) TCGA-GC-A3I6-01 1 39384795 39384795 C T RHBDL2 Missense_Mutation p.M30I 0.22 tolerated(0.19) benign(0.001) TCGA-GC-A3I6-01 1 47603168 47603168 C G CYP4A22 Missense_Mutation p.S4C 0.26 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-GC-A3I6-01 1 70504238 70504238 G A LRRC7 Missense_Mutation p.E873K 0.36 deleterious_low_confidence(0.01) benign(0.345) TCGA-GC-A3I6-01 1 93680450 93680450 G C CCDC18 Missense_Mutation p.R602T 0.38 deleterious(0) probably_damaging(0.982) TCGA-GC-A3I6-01 20 10621880 10621880 C G JAG1 Missense_Mutation p.E977Q 0.05 tolerated(0.1) probably_damaging(0.997) TCGA-GC-A3I6-01 20 23433219 23433219 A G CST11 Splice_Site p.X76_splice 0.34 TCGA-GC-A3I6-01 20 34022585 34022585 G C GDF5OS Missense_Mutation p.R210T 0.36 deleterious_low_confidence(0) benign(0.412) TCGA-GC-A3I6-01 20 40050336 40050336 G C CHD6 Missense_Mutation p.Q1647E 0.31 tolerated_low_confidence(0.09) benign(0.028) TCGA-GC-A3I6-01 21 18977218 18977218 C A BTG3 Nonsense_Mutation p.E91* 0.40 TCGA-GC-A3I6-01 21 27130452 27130452 G T GABPA Missense_Mutation p.D229Y 0.27 deleterious(0) possibly_damaging(0.521) TCGA-GC-A3I6-01 21 45152403 45152403 C T PDXK Intron 0.37 TCGA-GC-A3I6-01 21 45387862 45387862 G C AGPAT3 Missense_Mutation p.E72Q 0.21 tolerated(0.09) benign(0.014) TCGA-GC-A3I6-01 21 45978005 45978005 G C KRTAP10-3 Silent p.L198L 0.17 TCGA-GC-A3I6-01 22 20909408 20909408 G T MED15 Missense_Mutation p.A142S 0.27 tolerated_low_confidence(0.56) unknown(0) TCGA-GC-A3I6-01 22 21384120 21384120 C T SLC7A4 Silent p.S501S 0.19 TCGA-GC-A3I6-01 22 26860275 26860275 C G HPS4 Missense_Mutation p.E441Q 0.24 deleterious(0.05) benign(0.167) TCGA-GC-A3I6-01 22 31332626 31332626 C G MORC2 Missense_Mutation p.E475Q 0.47 deleterious(0.03) possibly_damaging(0.799) TCGA-GC-A3I6-01 22 46787591 46787591 G A CELSR1 Silent p.I2029I 0.18 TCGA-GC-A3I6-01 2 11802346 11802346 G A NTSR2 Silent p.F215F 0.05 TCGA-GC-A3I6-01 2 128477268 128477268 C A WDR33 Missense_Mutation p.M777I 0.31 deleterious_low_confidence(0.04) benign(0.064) TCGA-GC-A3I6-01 2 179432361 179432361 C G TTN Missense_Mutation p.K26166N 0.29 TCGA-GC-A3I6-01 2 179497730 179497730 G A TTN Silent p.I14376I 0.51 TCGA-GC-A3I6-01 2 202264201 202264201 C T TRAK2 Missense_Mutation p.E127K 0.20 deleterious(0.01) probably_damaging(1) TCGA-GC-A3I6-01 2 227924258 227924258 G T COL4A4 Nonsense_Mutation p.S749* 0.23 TCGA-GC-A3I6-01 2 230723895 230723895 G C TRIP12 Nonsense_Mutation p.S165* 0.61 TCGA-GC-A3I6-01 2 231308897 231308897 C T SP100 Missense_Mutation p.S92F 0.34 tolerated(1) possibly_damaging(0.683) TCGA-GC-A3I6-01 2 241710491 241710491 G C KIF1A Nonsense_Mutation p.S413* 0.22 TCGA-GC-A3I6-01 2 242757402 242757402 C T NEU4 Silent p.P174P 0.56 TCGA-GC-A3I6-01 2 30976054 30976054 G C CAPN13 Missense_Mutation p.Q318E 0.32 tolerated(0.23) benign(0.219) TCGA-GC-A3I6-01 2 37481367 37481367 G A PRKD3 Missense_Mutation p.L827F 0.41 deleterious(0) probably_damaging(0.964) TCGA-GC-A3I6-01 2 39964112 39964112 A T THUMPD2 Silent p.P425P 0.36 TCGA-GC-A3I6-01 2 54895611 54895611 G C SPTBN1 Missense_Mutation p.V2334L 0.46 tolerated(0.69) benign(0.051) TCGA-GC-A3I6-01 2 71060100 71060100 C T CD207 Nonsense_Mutation p.W216* 0.29 TCGA-GC-A3I6-01 2 74691751 74691751 G A MOGS Missense_Mutation p.H151Y 0.36 deleterious(0) probably_damaging(0.967) TCGA-GC-A3I6-01 2 74842183 74842183 G A M1AP Silent p.L112L 0.28 TCGA-GC-A3I6-01 2 99861855 99861855 A T LYG2 Missense_Mutation p.I84N 0.21 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 3 105377858 105377858 C T CBLB Missense_Mutation p.E969K 0.37 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-GC-A3I6-01 3 157082155 157082155 G C VEPH1 Missense_Mutation p.S425C 0.16 deleterious(0) probably_damaging(0.947) TCGA-GC-A3I6-01 3 158538031 158538031 A C MFSD1 Missense_Mutation p.K309T 0.35 tolerated(0.21) benign(0.333) TCGA-GC-A3I6-01 3 178922324 178922324 G A PIK3CA Missense_Mutation p.E365K 0.48 deleterious(0.05) possibly_damaging(0.705) TCGA-GC-A3I6-01 3 184018065 184018065 C A PSMD2 Intron 0.23 TCGA-GC-A3I6-01 3 30713543 30713543 G A TGFBR2 Missense_Mutation p.E315K 0.80 deleterious(0) probably_damaging(0.999) TCGA-GC-A3I6-01 3 41746766 41746766 G A ULK4 Missense_Mutation p.T889M 0.81 deleterious(0) probably_damaging(0.932) TCGA-GC-A3I6-01 3 46592976 46592976 C G LRRC2 Missense_Mutation p.E36Q 0.70 deleterious(0.05) benign(0.043) TCGA-GC-A3I6-01 3 49012253 49012253 C T ARIH2 Missense_Mutation p.P298S 0.84 deleterious(0) probably_damaging(0.999) TCGA-GC-A3I6-01 4 10446215 10446215 G A ZNF518B Missense_Mutation p.H580Y 0.39 tolerated(1) benign(0) TCGA-GC-A3I6-01 4 107268795 107268795 G A AIMP1 Silent p.V319V 0.07 TCGA-GC-A3I6-01 4 123161005 123161005 G A KIAA1109 Missense_Mutation p.D1390N 0.33 probably_damaging(0.958) TCGA-GC-A3I6-01 4 156135697 156135697 C T NPY2R Silent p.A202A 0.05 TCGA-GC-A3I6-01 4 188924685 188924685 G A ZFP42 Missense_Mutation p.E242K 0.36 deleterious(0) probably_damaging(0.999) TCGA-GC-A3I6-01 4 40104376 40104376 G A N4BP2 Missense_Mutation p.G304D 0.31 tolerated(0.27) benign(0.025) TCGA-GC-A3I6-01 4 56301522 56301522 G C CLOCK 3'UTR 0.24 TCGA-GC-A3I6-01 4 6302887 6302887 G A WFS1 Silent p.T455T 0.28 TCGA-GC-A3I6-01 4 71510603 71510603 G C ENAM 3'UTR 0.29 TCGA-GC-A3I6-01 4 78650191 78650191 C T CNOT6L Missense_Mutation p.A357T 0.25 tolerated(0.09) probably_damaging(0.997) TCGA-GC-A3I6-01 4 78650194 78650194 C G CNOT6L Missense_Mutation p.V356L 0.25 deleterious(0.01) possibly_damaging(0.718) TCGA-GC-A3I6-01 4 78815330 78815330 C G MRPL1 Missense_Mutation p.A199G 0.35 deleterious(0) probably_damaging(0.911) TCGA-GC-A3I6-01 5 121767723 121767723 G A SNCAIP Silent p.L414L 0.63 TCGA-GC-A3I6-01 5 140558309 140558309 G A PCDHB8 Missense_Mutation p.E232K 0.53 tolerated_low_confidence(0.59) benign(0.005) TCGA-GC-A3I6-01 5 140581588 140581588 G T PCDHB11 Missense_Mutation p.Q747H 0.41 tolerated_low_confidence(0.43) benign(0.004) TCGA-GC-A3I6-01 5 140793016 140793016 G T PCDHGA10 Missense_Mutation p.G92C 0.51 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GC-A3I6-01 5 145609388 145609388 G C RBM27 Missense_Mutation p.K168N 0.39 deleterious(0.01) possibly_damaging(0.797) TCGA-GC-A3I6-01 5 147475436 147475436 G A SPINK5 Missense_Mutation p.E284K 0.54 tolerated(0.4) benign(0.007) TCGA-GC-A3I6-01 5 1589406 1589406 C T SDHAP3 RNA 0.20 TCGA-GC-A3I6-01 5 169461533 169461533 C T DOCK2 Missense_Mutation p.R1200C 0.28 deleterious(0) possibly_damaging(0.712) TCGA-GC-A3I6-01 5 170145787 170145787 G A KCNIP1 Missense_Mutation p.M40I 0.37 deleterious(0.05) benign(0.12) TCGA-GC-A3I6-01 5 176794807 176794807 C T RGS14 Silent p.L240L 0.57 TCGA-GC-A3I6-01 5 176895189 176895189 C G DBN1 Missense_Mutation p.E61Q 0.47 deleterious(0.02) probably_damaging(0.979) TCGA-GC-A3I6-01 5 64892995 64892995 G C TRIM23 Missense_Mutation p.H398D 0.46 deleterious(0) possibly_damaging(0.784) TCGA-GC-A3I6-01 5 79950579 79950579 C T MSH3 Silent p.L11L 0.25 TCGA-GC-A3I6-01 6 109803198 109803198 T C ZBTB24 Missense_Mutation p.Q11R 0.68 tolerated(0.37) benign(0.002) TCGA-GC-A3I6-01 6 111983077 111983077 G A FYN Silent p.I493I 0.61 TCGA-GC-A3I6-01 6 147124289 147124289 C T ADGB Intron 0.38 TCGA-GC-A3I6-01 6 152737694 152737694 C G SYNE1 Missense_Mutation p.E1960Q 0.05 possibly_damaging(0.529) TCGA-GC-A3I6-01 6 155154524 155154524 A G SCAF8 Missense_Mutation p.T1271A 0.60 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-GC-A3I6-01 6 158922867 158922867 G A TULP4 Silent p.L724L 0.72 TCGA-GC-A3I6-01 6 160500774 160500774 G C IGF2R Missense_Mutation p.E1881Q 0.62 tolerated(0.37) possibly_damaging(0.591) TCGA-GC-A3I6-01 6 18264194 18264194 C T DEK Missense_Mutation p.E9K 0.35 deleterious_low_confidence(0.03) benign(0.049) TCGA-GC-A3I6-01 6 27219016 27219016 G A PRSS16 Missense_Mutation p.M230I 0.47 tolerated(0.25) benign(0.002) TCGA-GC-A3I6-01 6 27775577 27775577 C T HIST1H2BL Silent p.E36E 0.28 TCGA-GC-A3I6-01 6 29274779 29274779 C T OR14J1 Silent p.L105L 0.53 TCGA-GC-A3I6-01 6 29640988 29640988 G A ZFP57 Silent p.T300T 0.81 TCGA-GC-A3I6-01 6 31975500 31975500 C A AL645922.1 5'Flank 0.38 TCGA-GC-A3I6-01 6 90647890 90647890 C T BACH2 Silent p.Q672Q 0.73 TCGA-GC-A3I6-01 7 104758350 104758350 C G SRPK2 Missense_Mutation p.E679Q 0.29 deleterious(0) probably_damaging(0.923) TCGA-GC-A3I6-01 7 106938761 106938761 C T COG5 Missense_Mutation p.G411E 0.28 deleterious(0) probably_damaging(0.974) TCGA-GC-A3I6-01 7 140158900 140158900 C T MKRN1 Silent p.E226E 0.30 TCGA-GC-A3I6-01 7 140273705 140273705 G A DENND2A Missense_Mutation p.S450F 0.27 deleterious(0.02) benign(0.25) TCGA-GC-A3I6-01 7 142985599 142985599 G T CASP2 Silent p.L17L 0.21 TCGA-GC-A3I6-01 7 1481960 1481960 G C MICALL2 Missense_Mutation p.Q527E 0.35 tolerated(0.48) benign(0.036) TCGA-GC-A3I6-01 7 151949045 151949045 C A KMT2C Nonsense_Mutation p.E534* 0.38 TCGA-GC-A3I6-01 7 155251266 155251266 G T EN2 Missense_Mutation p.R65L 0.27 deleterious(0) benign(0.002) TCGA-GC-A3I6-01 7 158827298 158827298 G A VIPR2 Nonsense_Mutation p.R285* 0.26 TCGA-GC-A3I6-01 7 22768323 22768323 G C IL6 Missense_Mutation p.K74N 0.07 tolerated(0.76) benign(0.013) TCGA-GC-A3I6-01 7 23239972 23239972 G A NUPL2 Missense_Mutation p.E294K 0.47 tolerated(0.6) benign(0.009) TCGA-GC-A3I6-01 7 43810749 43810749 G C BLVRA 5'UTR 0.57 TCGA-GC-A3I6-01 7 75144016 75144016 C T Y_RNA 5'Flank 0.35 TCGA-GC-A3I6-01 7 95165794 95165794 G A ASB4 Missense_Mutation p.V342I 0.22 tolerated(0.47) benign(0.039) TCGA-GC-A3I6-01 8 101629926 101629926 A G SNX31 Silent p.Y118Y 0.22 TCGA-GC-A3I6-01 8 114185980 114185980 G A CSMD3 Missense_Mutation p.S227L 0.23 tolerated(0.37) benign(0.034) TCGA-GC-A3I6-01 8 114185981 114185981 A T CSMD3 Missense_Mutation p.S227T 0.23 tolerated(0.53) benign(0.125) TCGA-GC-A3I6-01 8 124382256 124382256 C T ATAD2 Missense_Mutation p.E246K 0.53 tolerated(0.18) benign(0.007) TCGA-GC-A3I6-01 8 144457813 144457813 C T RHPN1 Missense_Mutation p.R51W 0.54 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 8 30620854 30620854 C T UBXN8 RNA 0.56 TCGA-GC-A3I6-01 8 36642052 36642052 C T KCNU1 Silent p.L42L 0.32 TCGA-GC-A3I6-01 8 63939794 63939794 G C GGH Silent p.L102L 0.23 TCGA-GC-A3I6-01 8 9912011 9912011 C T MSRA 5'UTR 0.24 TCGA-GC-A3I6-01 9 109688322 109688322 C G ZNF462 Missense_Mutation p.T710S 0.34 benign(0.003) TCGA-GC-A3I6-01 9 126143682 126143682 C T DENND1A 3'UTR 0.10 TCGA-GC-A3I6-01 9 130630261 130630261 G A AK1 3'UTR 0.18 TCGA-GC-A3I6-01 9 130630320 130630320 G A AK1 Silent p.S184S 0.30 TCGA-GC-A3I6-01 9 130670821 130670821 C G ST6GALNAC4 Missense_Mutation p.E253D 0.46 probably_damaging(0.988) TCGA-GC-A3I6-01 9 130742369 130742369 G A FAM102A Silent p.F16F 0.32 TCGA-GC-A3I6-01 9 130742417 130742417 G C FAM102A 5'UTR 0.30 TCGA-GC-A3I6-01 9 139571568 139571568 C A AGPAT2 Nonsense_Mutation p.E113* 0.28 TCGA-GC-A3I6-01 9 140151344 140151344 G A NELFB Silent p.V145V 0.16 TCGA-GC-A3I6-01 9 84235445 84235445 G A TLE1 Silent p.L208L 0.23 TCGA-GC-A3I6-01 9 95840160 95840160 G A SUSD3 Missense_Mutation p.V104M 0.46 deleterious(0) probably_damaging(0.999) TCGA-GC-A3I6-01 X 100524223 100524223 G A TAF7L Silent p.L449L 0.18 TCGA-GC-A3I6-01 X 110439755 110439755 G A PAK3 Missense_Mutation p.E468K 0.47 deleterious(0) probably_damaging(1) TCGA-GC-A3I6-01 X 117053581 117053581 G C KLHL13 Missense_Mutation p.S161C 0.34 tolerated(0.19) benign(0.021) TCGA-GC-A3I6-01 X 139866322 139866322 C T CDR1 Silent p.S70S 0.05 TCGA-GC-A3I6-01 X 153224926 153224926 G A HCFC1 Silent p.L487L 0.40 TCGA-GC-A3I6-01 X 64959692 64959692 G A MSN Silent p.K557K 0.41 TCGA-GC-A3I6-01 X 70148356 70148356 G T SLC7A3 Silent p.L219L 0.33 TCGA-GC-A3I6-01 X 70823836 70823836 G A ACRC Missense_Mutation p.D237N 0.84 unknown(0) TCGA-GC-A3OO-01 10 124909479 124909479 C T HMX2 Missense_Mutation p.S221L 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-GC-A3OO-01 10 17756841 17756841 C T STAM 3'UTR 0.12 TCGA-GC-A3OO-01 10 50708622 50708622 C G ERCC6 Silent p.L549L 0.10 TCGA-GC-A3OO-01 10 5138765 5138765 C T AKR1C3 Missense_Mutation p.S83L 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-GC-A3OO-01 10 5995118 5995118 C T IL15RA Silent p.P248P 0.12 TCGA-GC-A3OO-01 10 70863778 70863778 G A SRGN Missense_Mutation p.D127N 0.08 tolerated(0.51) benign(0.033) TCGA-GC-A3OO-01 10 71871382 71871382 C T H2AFY2 Silent p.F354F 0.19 TCGA-GC-A3OO-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.17 TCGA-GC-A3OO-01 10 99379418 99379418 G C MORN4 5'UTR 0.06 TCGA-GC-A3OO-01 11 106558346 106558346 G C GUCY1A2 Missense_Mutation p.L741V 0.09 tolerated_low_confidence(0.23) benign(0.014) TCGA-GC-A3OO-01 11 111746739 111746739 C A FDXACB1 Missense_Mutation p.R261M 0.15 tolerated(0.11) benign(0.073) TCGA-GC-A3OO-01 11 119045225 119045225 C T NLRX1 Missense_Mutation p.R305C 0.06 deleterious(0) probably_damaging(1) TCGA-GC-A3OO-01 11 19077062 19077062 G A MRGPRX2 Silent p.L296L 0.06 TCGA-GC-A3OO-01 11 19077358 19077358 G A MRGPRX2 Missense_Mutation p.L198F 0.10 deleterious(0.03) possibly_damaging(0.802) TCGA-GC-A3OO-01 11 47493803 47493803 C T CELF1 Silent p.K506K 0.06 TCGA-GC-A3OO-01 11 48267202 48267202 G A OR4X2 Missense_Mutation p.D183N 0.05 deleterious(0.05) benign(0.248) TCGA-GC-A3OO-01 11 55587678 55587678 T A OR5D18 Silent p.S191S 0.10 TCGA-GC-A3OO-01 11 55652900 55652900 G A TRIM51 Splice_Site 0.05 TCGA-GC-A3OO-01 11 56380343 56380343 G A OR5M1 Silent p.F212F 0.14 TCGA-GC-A3OO-01 11 56468553 56468553 C T OR9G1 Silent p.S230S 0.04 TCGA-GC-A3OO-01 11 59860925 59860925 G A MS4A2 Missense_Mutation p.G144E 0.05 deleterious(0) probably_damaging(0.998) TCGA-GC-A3OO-01 11 64669802 64669802 G C ATG2A Missense_Mutation p.I1278M 0.14 deleterious(0.01) possibly_damaging(0.54) TCGA-GC-A3OO-01 11 76171016 76171016 C T C11orf30 Missense_Mutation p.P153L 0.15 deleterious(0) possibly_damaging(0.713) TCGA-GC-A3OO-01 12 111072480 111072480 C T TCTN1 Silent p.L240L 0.17 TCGA-GC-A3OO-01 12 111785494 111785494 G C CUX2 Missense_Mutation p.E1276Q 0.13 tolerated_low_confidence(0.11) benign(0.002) TCGA-GC-A3OO-01 12 11183629 11183629 G T TAS2R31 Silent p.L102L 0.04 TCGA-GC-A3OO-01 12 11183914 11183914 G A TAS2R31 Silent p.I7I 0.06 TCGA-GC-A3OO-01 12 21624476 21624476 G A RECQL Missense_Mutation p.S518F 0.09 deleterious(0) possibly_damaging(0.658) TCGA-GC-A3OO-01 12 31604940 31604940 G A DENND5B Silent p.V521V 0.10 TCGA-GC-A3OO-01 12 49883353 49883353 G A SPATS2 Missense_Mutation p.E71K 0.19 deleterious(0) benign(0.242) TCGA-GC-A3OO-01 12 52938314 52938314 C T KRT71 3'UTR 0.10 TCGA-GC-A3OO-01 12 53225239 53225239 C A KRT79 Missense_Mutation p.D217Y 0.22 deleterious(0) probably_damaging(0.976) TCGA-GC-A3OO-01 12 54901657 54901657 C G NCKAP1L Silent p.L109L 0.21 TCGA-GC-A3OO-01 12 56361840 56361840 G A CDK2 Missense_Mutation p.D68N 0.12 tolerated(0.16) probably_damaging(0.964) TCGA-GC-A3OO-01 12 56733900 56733900 C G IL23A 3'UTR 0.13 TCGA-GC-A3OO-01 12 9313698 9313698 C G PZP Missense_Mutation p.E935Q 0.26 tolerated(0.13) probably_damaging(0.979) TCGA-GC-A3OO-01 14 21852042 21852042 C T SUPT16H Silent p.K15K 0.10 TCGA-GC-A3OO-01 14 91937257 91937257 C G SMEK1 Missense_Mutation p.K515N 0.23 deleterious(0) probably_damaging(0.978) TCGA-GC-A3OO-01 14 91937337 91937337 C T SMEK1 Missense_Mutation p.D489N 0.20 tolerated(1) benign(0.115) TCGA-GC-A3OO-01 14 93125804 93125804 C G RIN3 Silent p.L775L 0.11 TCGA-GC-A3OO-01 15 67793052 67793052 G A IQCH Missense_Mutation p.D1018N 0.10 tolerated(0.1) benign(0.296) TCGA-GC-A3OO-01 15 68118511 68118511 G A SKOR1 Silent p.E301E 0.10 TCGA-GC-A3OO-01 15 69238236 69238236 C G SPESP1 Missense_Mutation p.F121L 0.15 deleterious(0) probably_damaging(0.997) TCGA-GC-A3OO-01 15 72552921 72552921 C T PARP6 Silent p.K218K 0.13 TCGA-GC-A3OO-01 15 74425216 74425216 G C ISLR2 Missense_Mutation p.E41Q 0.10 tolerated(0.15) probably_damaging(0.986) TCGA-GC-A3OO-01 16 30731577 30731577 G T SRCAP Missense_Mutation p.R971L 0.17 unknown(0) TCGA-GC-A3OO-01 16 5077281 5077281 C G NAGPA Missense_Mutation p.R425T 0.06 benign(0.002) TCGA-GC-A3OO-01 16 68901008 68901008 G A TANGO6 Missense_Mutation p.M293I 0.09 tolerated(0.41) benign(0) TCGA-GC-A3OO-01 16 82033729 82033729 C G SDR42E1 Missense_Mutation p.D57H 0.08 deleterious(0.02) probably_damaging(0.989) TCGA-GC-A3OO-01 17 1704306 1704306 C T SMYD4 Missense_Mutation p.D128N 0.09 deleterious(0) probably_damaging(1) TCGA-GC-A3OO-01 17 18167607 18167607 G A MIEF2 Silent p.E309E 0.07 TCGA-GC-A3OO-01 17 18167929 18167929 G C MIEF2 Missense_Mutation p.E417Q 0.06 deleterious(0.02) probably_damaging(0.957) TCGA-GC-A3OO-01 17 18167950 18167950 G C MIEF2 Missense_Mutation p.E424Q 0.10 deleterious(0) possibly_damaging(0.895) TCGA-GC-A3OO-01 17 26669328 26669328 C T TNFAIP1 Missense_Mutation p.R192C 0.17 deleterious(0.04) benign(0.066) TCGA-GC-A3OO-01 17 27016513 27016513 C T SUPT6H Silent p.I1092I 0.06 TCGA-GC-A3OO-01 17 29325811 29325811 C G RNF135 Missense_Mutation p.Q301E 0.09 deleterious(0) probably_damaging(0.936) TCGA-GC-A3OO-01 17 35766456 35766456 G C ACACA 5'UTR 0.14 TCGA-GC-A3OO-01 17 37881392 37881392 A G ERBB2 Missense_Mutation p.T862A 0.18 deleterious(0) probably_damaging(0.968) TCGA-GC-A3OO-01 17 3801091 3801091 G C P2RX1 3'UTR 0.29 TCGA-GC-A3OO-01 17 3801112 3801112 G C P2RX1 Missense_Mutation p.S399C 0.35 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-GC-A3OO-01 17 3954291 3954291 G A ZZEF1 Missense_Mutation p.R1883W 0.32 deleterious(0) probably_damaging(0.972) TCGA-GC-A3OO-01 17 3977490 3977490 C T ZZEF1 Silent p.L1213L 0.06 TCGA-GC-A3OO-01 17 40823447 40823447 C T PLEKHH3 Silent p.Q402Q 0.11 TCGA-GC-A3OO-01 17 48917592 48917592 G A WFIKKN2 Missense_Mutation p.E315K 0.11 tolerated(0.55) benign(0.001) TCGA-GC-A3OO-01 17 60654067 60654067 C T TLK2 Intron 0.15 TCGA-GC-A3OO-01 17 62248557 62248557 G C TEX2 Silent p.L865L 0.11 TCGA-GC-A3OO-01 17 62502215 62502215 C T DDX5 Missense_Mutation p.R8Q 0.27 deleterious(0.04) benign(0.238) TCGA-GC-A3OO-01 17 7225069 7225069 G A NEURL4 Missense_Mutation p.S970F 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-GC-A3OO-01 17 7578272 7578272 G A TP53 Missense_Mutation p.H193Y 0.28 deleterious(0) probably_damaging(1) TCGA-GC-A3OO-01 17 76547693 76547693 C G DNAH17 Missense_Mutation p.R772P 0.07 benign(0.09) TCGA-GC-A3OO-01 18 12308761 12308761 G A TUBB6 Missense_Mutation p.E45K 0.17 deleterious_low_confidence(0.02) benign(0.034) TCGA-GC-A3OO-01 18 71797676 71797676 G A FBXO15 Missense_Mutation p.P184S 0.09 deleterious(0.02) probably_damaging(1) TCGA-GC-A3OO-01 18 9256687 9256687 C G ANKRD12 Nonsense_Mutation p.S1141* 0.08 TCGA-GC-A3OO-01 19 13056771 13056771 C T RAD23A Silent p.V3V 0.10 TCGA-GC-A3OO-01 19 14000230 14000230 G A C19orf57 Missense_Mutation p.S480F 0.08 tolerated(0.2) probably_damaging(0.919) TCGA-GC-A3OO-01 19 17746845 17746845 G A UNC13A Missense_Mutation p.P1068L 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-GC-A3OO-01 19 22271790 22271790 C G ZNF257 Nonsense_Mutation p.S413* 0.21 TCGA-GC-A3OO-01 19 4305978 4305978 G A FSD1 Silent p.V17V 0.26 TCGA-GC-A3OO-01 19 44792882 44792882 G C ZNF235 Missense_Mutation p.H236D 0.07 tolerated(0.15) benign(0.001) TCGA-GC-A3OO-01 19 49954759 49954759 C T PIH1D1 Missense_Mutation p.E25K 0.06 tolerated(0.2) possibly_damaging(0.559) TCGA-GC-A3OO-01 19 52497183 52497183 G C ZNF615 Silent p.T393T 0.10 TCGA-GC-A3OO-01 1 10240059 10240059 G A UBE4B 3'UTR 0.08 TCGA-GC-A3OO-01 1 103404632 103404632 C T COL11A1 Missense_Mutation p.E1133K 0.29 unknown(0) TCGA-GC-A3OO-01 1 11086932 11086932 G A MASP2 3'UTR 0.28 TCGA-GC-A3OO-01 1 115166229 115166229 C T DENND2C Missense_Mutation p.R281Q 0.09 tolerated(0.42) possibly_damaging(0.88) TCGA-GC-A3OO-01 1 149871751 149871751 G A BOLA1 Missense_Mutation p.E47K 0.10 tolerated(0.77) benign(0.006) TCGA-GC-A3OO-01 1 156145022 156145022 C G SEMA4A Missense_Mutation p.S527C 0.26 tolerated(0.18) possibly_damaging(0.841) TCGA-GC-A3OO-01 1 158435847 158435847 C G OR10K1 Missense_Mutation p.L166V 0.26 tolerated(0.05) probably_damaging(0.932) TCGA-GC-A3OO-01 1 161132715 161132715 G A USP21 Silent p.Q300Q 0.10 TCGA-GC-A3OO-01 1 16531255 16531255 C T ARHGEF19 Missense_Mutation p.E636K 0.32 deleterious(0.02) possibly_damaging(0.629) TCGA-GC-A3OO-01 1 186283842 186283842 G A TPR Nonsense_Mutation p.Q2319* 0.09 TCGA-GC-A3OO-01 1 205069074 205069074 G A RBBP5 Missense_Mutation p.H291Y 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-GC-A3OO-01 1 207791495 207791495 C T CR1 Silent p.I2323I 0.05 TCGA-GC-A3OO-01 1 23418665 23418665 C T LUZP1 Missense_Mutation p.R697Q 0.05 deleterious(0.01) benign(0.213) TCGA-GC-A3OO-01 1 248128674 248128674 C T OR2AK2 Missense_Mutation p.S14L 0.06 tolerated(0.21) benign(0.307) TCGA-GC-A3OO-01 1 29070328 29070328 G A YTHDF2 Missense_Mutation p.E516K 0.06 deleterious(0) probably_damaging(0.909) TCGA-GC-A3OO-01 1 41945174 41945174 C T EDN2 Splice_Site p.X148_splice 0.08 TCGA-GC-A3OO-01 1 47840885 47840885 C T CMPK1 Nonsense_Mutation p.Q189* 0.05 TCGA-GC-A3OO-01 1 65146982 65146982 G A CACHD1 Missense_Mutation p.E1099K 0.05 deleterious(0.03) benign(0.04) TCGA-GC-A3OO-01 1 70505042 70505042 G A LRRC7 Missense_Mutation p.D1141N 0.26 deleterious(0) benign(0.182) TCGA-GC-A3OO-01 1 7839814 7839814 G T VAMP3 3'UTR 0.13 TCGA-GC-A3OO-01 20 25472060 25472060 G A NINL Missense_Mutation p.A471V 0.12 tolerated(0.54) benign(0.002) TCGA-GC-A3OO-01 20 3677353 3677353 C T SIGLEC1 Missense_Mutation p.E855K 0.05 tolerated(0.06) benign(0.071) TCGA-GC-A3OO-01 20 45140739 45140739 C T ZNF334 Translation_Start_Site p.M1? 0.10 tolerated_low_confidence(0.65) unknown(0) TCGA-GC-A3OO-01 20 49576815 49576815 G A MOCS3 3'UTR 0.15 TCGA-GC-A3OO-01 21 30439221 30439221 G A CCT8 Nonsense_Mutation p.Q185* 0.07 TCGA-GC-A3OO-01 21 47614422 47614422 C T LSS Missense_Mutation p.M657I 0.10 tolerated(0.73) benign(0.015) TCGA-GC-A3OO-01 22 22869055 22869055 G A ZNF280A Silent p.C300C 0.16 TCGA-GC-A3OO-01 22 29966488 29966488 G A NIPSNAP1 Silent p.F44F 0.10 TCGA-GC-A3OO-01 22 32506039 32506039 C T SLC5A1 Silent p.L612L 0.18 TCGA-GC-A3OO-01 22 42000121 42000121 C T DESI1 Missense_Mutation p.D73N 0.05 tolerated(0.08) benign(0.03) TCGA-GC-A3OO-01 22 44892894 44892894 G C LDOC1L Silent p.L181L 0.38 TCGA-GC-A3OO-01 22 50682550 50682550 G A TUBGCP6 Silent p.L113L 0.05 TCGA-GC-A3OO-01 2 102499087 102499087 G A MAP4K4 Missense_Mutation p.E1009K 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GC-A3OO-01 2 108910720 108910720 G C SULT1C2 Missense_Mutation p.E63Q 0.04 tolerated(0.49) benign(0.023) TCGA-GC-A3OO-01 2 170502423 170502423 G C CCDC173 Silent p.L529L 0.26 TCGA-GC-A3OO-01 2 203130527 203130527 G T NOP58 5'UTR 0.17 TCGA-GC-A3OO-01 2 203130588 203130588 G A NOP58 5'UTR 0.29 TCGA-GC-A3OO-01 2 228882660 228882660 C T SPHKAP Missense_Mutation p.M970I 0.11 tolerated(0.21) benign(0.001) TCGA-GC-A3OO-01 2 231978477 231978477 G A HTR2B Silent p.F173F 0.05 TCGA-GC-A3OO-01 2 233421234 233421234 G C EIF4E2 Missense_Mutation p.K43N 0.15 tolerated(0.14) benign(0.123) TCGA-GC-A3OO-01 2 237074842 237074842 G T GBX2 Missense_Mutation p.F254L 0.11 deleterious(0) probably_damaging(0.992) TCGA-GC-A3OO-01 2 74702235 74702235 C T CCDC142 Missense_Mutation p.G595R 0.04 deleterious(0) probably_damaging(1) TCGA-GC-A3OO-01 3 111604194 111604194 G A PHLDB2 Missense_Mutation p.D424N 0.08 deleterious(0.01) benign(0.008) TCGA-GC-A3OO-01 3 11301252 11301252 G A HRH1 Missense_Mutation p.E177K 0.05 tolerated(0.21) benign(0.03) TCGA-GC-A3OO-01 3 122259634 122259634 G A PARP9 Silent p.L519L 0.05 TCGA-GC-A3OO-01 3 130293317 130293317 G A COL6A6 Silent p.K1165K 0.21 TCGA-GC-A3OO-01 3 133524732 133524732 G A SRPRB Missense_Mutation p.G14S 0.24 tolerated_low_confidence(0.48) benign(0.002) TCGA-GC-A3OO-01 3 14756871 14756871 G A C3orf20 Nonsense_Mutation p.W463* 0.09 TCGA-GC-A3OO-01 3 171404524 171404524 G A PLD1 Silent p.L606L 0.09 TCGA-GC-A3OO-01 3 180675620 180675620 A G FXR1 Silent p.G298G 0.11 TCGA-GC-A3OO-01 3 195701330 195701330 C A SDHAP1 RNA 0.13 TCGA-GC-A3OO-01 3 33134911 33134911 G A TMPPE Silent p.V259V 0.23 TCGA-GC-A3OO-01 3 33255473 33255473 C G SUSD5 Missense_Mutation p.Q79H 0.05 tolerated(0.15) possibly_damaging(0.868) TCGA-GC-A3OO-01 3 38591869 38591869 A G SCN5A Silent p.S1998S 0.14 TCGA-GC-A3OO-01 4 128651894 128651894 G T SLC25A31 Missense_Mutation p.G65V 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-GC-A3OO-01 4 141331735 141331735 C T CLGN Missense_Mutation p.E64K 0.06 deleterious(0) probably_damaging(0.988) TCGA-GC-A3OO-01 4 175899002 175899002 C T ADAM29 Nonsense_Mutation p.Q776* 0.11 TCGA-GC-A3OO-01 4 87671842 87671842 C G PTPN13 Missense_Mutation p.A957G 0.24 tolerated(0.26) benign(0.253) TCGA-GC-A3OO-01 5 147481356 147481356 G A SPINK5 Missense_Mutation p.E439K 0.09 tolerated(0.06) possibly_damaging(0.637) TCGA-GC-A3OO-01 5 179290667 179290667 G A TBC1D9B Silent p.G1178G 0.18 TCGA-GC-A3OO-01 5 180419911 180419911 G A BTNL3 Missense_Mutation p.A50T 0.09 tolerated(0.39) benign(0.177) TCGA-GC-A3OO-01 5 23526534 23526534 G A PRDM9 Missense_Mutation p.S446N 0.50 tolerated(0.24) benign(0.001) TCGA-GC-A3OO-01 5 32091004 32091004 G A PDZD2 Missense_Mutation p.E2484K 0.06 deleterious(0) possibly_damaging(0.849) TCGA-GC-A3OO-01 5 43291136 43291136 C T HMGCS1 3'UTR 0.65 TCGA-GC-A3OO-01 5 71516873 71516873 C G MRPS27 Missense_Mutation p.E370Q 0.05 tolerated(0.15) benign(0.175) TCGA-GC-A3OO-01 6 107067168 107067168 G C RTN4IP1 Missense_Mutation p.Q177E 0.11 tolerated(1) benign(0.002) TCGA-GC-A3OO-01 6 13273104 13273104 G C TBC1D7 Intron 0.06 TCGA-GC-A3OO-01 6 149262491 149262491 G A UST Missense_Mutation p.R123K 0.05 tolerated(0.24) benign(0.246) TCGA-GC-A3OO-01 6 158532517 158532517 G A SERAC1 Silent p.L616L 0.07 TCGA-GC-A3OO-01 6 26188994 26188994 C T HIST1H4D Silent p.%3D 0.11 TCGA-GC-A3OO-01 6 31506817 31506817 G A DDX39B Intron 0.11 TCGA-GC-A3OO-01 6 32163377 32163377 G A NOTCH4 Missense_Mutation p.P1950L 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GC-A3OO-01 6 32810816 32810816 C T PSMB8 Silent p.Q66Q 0.09 TCGA-GC-A3OO-01 6 46657366 46657366 G C TDRD6 Missense_Mutation p.E501Q 0.26 deleterious(0.01) possibly_damaging(0.661) TCGA-GC-A3OO-01 6 52869821 52869821 G C ICK 3'UTR 0.13 TCGA-GC-A3OO-01 7 100468309 100468309 C T TRIP6 Missense_Mutation p.R315C 0.12 deleterious(0) probably_damaging(1) TCGA-GC-A3OO-01 7 134260673 134260673 G A AKR1B15 Missense_Mutation p.R246K 0.10 tolerated(0.05) probably_damaging(1) TCGA-GC-A3OO-01 7 135107051 135107051 G C CNOT4 Missense_Mutation p.Q76E 0.05 tolerated(0.07) possibly_damaging(0.754) TCGA-GC-A3OO-01 7 138822675 138822675 G A TTC26 Missense_Mutation p.R75K 0.05 tolerated(1) benign(0.009) TCGA-GC-A3OO-01 7 143018480 143018480 G A CLCN1 Silent p.Q152Q 0.11 TCGA-GC-A3OO-01 7 143421796 143421796 G C FAM115C Silent p.L837L 0.10 TCGA-GC-A3OO-01 7 154680984 154680984 G A DPP6 Missense_Mutation p.M769I 0.14 tolerated(0.45) benign(0.005) TCGA-GC-A3OO-01 7 26386059 26386059 G A SNX10 5'UTR 0.07 TCGA-GC-A3OO-01 7 30066007 30066007 G A FKBP14 Missense_Mutation p.R40C 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A3OO-01 7 30962182 30962182 G T AQP1 Missense_Mutation p.D185Y 0.06 tolerated(0.62) probably_damaging(0.996) TCGA-GC-A3OO-01 7 38431407 38431407 T C AMPH Missense_Mutation p.D607G 0.11 tolerated(0.08) benign(0.006) TCGA-GC-A3OO-01 7 66240337 66240337 G A KCTD7 Silent p.V101V 0.08 TCGA-GC-A3OO-01 7 77539723 77539723 C G PHTF2 Nonsense_Mutation p.S224* 0.09 TCGA-GC-A3OO-01 7 82585237 82585237 C T PCLO Missense_Mutation p.D1678N 0.05 unknown(0) TCGA-GC-A3OO-01 8 125113410 125113410 C T FER1L6 Silent p.N1652N 0.10 TCGA-GC-A3OO-01 8 134477108 134477108 C T ST3GAL1 Missense_Mutation p.G199E 0.08 possibly_damaging(0.486) TCGA-GC-A3OO-01 8 27667830 27667830 C T PBK Missense_Mutation p.D321N 0.06 tolerated(1) benign(0.001) TCGA-GC-A3OO-01 8 95953198 95953198 G A TP53INP1 5'UTR 0.10 TCGA-GC-A3OO-01 8 99148933 99148933 C G POP1 Missense_Mutation p.S412C 0.10 tolerated(0.12) benign(0.012) TCGA-GC-A3OO-01 8 99149172 99149172 C T POP1 Missense_Mutation p.S451F 0.05 deleterious(0.04) benign(0.021) TCGA-GC-A3OO-01 9 130479144 130479144 G A TTC16 Missense_Mutation p.G14S 0.14 tolerated(0.56) benign(0.003) TCGA-GC-A3OO-01 9 33998823 33998823 C G UBAP2 Missense_Mutation p.D47H 0.14 deleterious(0) probably_damaging(0.987) TCGA-GC-A3OO-01 9 35062058 35062058 C T VCP Silent p.V341V 0.14 TCGA-GC-A3OO-01 9 35716479 35716479 C T TLN1 Missense_Mutation p.E845K 0.06 deleterious(0.02) probably_damaging(0.968) TCGA-GC-A3OO-01 9 73235278 73235278 C T TRPM3 Missense_Mutation p.D603N 0.08 tolerated(0.08) probably_damaging(0.982) TCGA-GC-A3OO-01 9 84606383 84606383 C T SPATA31D1 Missense_Mutation p.S333F 0.06 deleterious(0.03) probably_damaging(0.953) TCGA-GC-A3OO-01 9 92003658 92003658 C T SEMA4D Missense_Mutation p.E334K 0.09 deleterious(0.05) benign(0.029) TCGA-GC-A3OO-01 X 2407457 2407457 T C ZBED1 Missense_Mutation p.N435S 0.13 tolerated(0.75) benign(0.001) TCGA-GC-A3OO-01 X 49022469 49022469 C G MAGIX Missense_Mutation p.R246G 0.12 tolerated(0.08) benign(0.173) TCGA-GC-A3RB-01 10 1042070 1042070 G C GTPBP4 Silent p.L116L 0.20 TCGA-GC-A3RB-01 10 70404903 70404903 C T TET1 Missense_Mutation p.S806F 0.28 deleterious(0) possibly_damaging(0.778) TCGA-GC-A3RB-01 10 75488341 75488341 C G RP11-464F9.1 RNA 0.21 TCGA-GC-A3RB-01 10 78669798 78669798 C G KCNMA1 Missense_Mutation p.E1008Q 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A3RB-01 10 79565534 79565534 G A DLG5 Missense_Mutation p.R1685C 0.68 deleterious(0) possibly_damaging(0.69) TCGA-GC-A3RB-01 11 108381102 108381102 G A EXPH5 Missense_Mutation p.S1711L 0.28 tolerated(0.11) benign(0.001) TCGA-GC-A3RB-01 11 115047146 115047146 C T CADM1 3'UTR 0.59 TCGA-GC-A3RB-01 11 19735319 19735319 C T NAV2 Silent p.H26H 0.55 TCGA-GC-A3RB-01 11 46916236 46916243 CAAGCTCG - LRP4 Frame_Shift_Del p.E480Lfs*41 0.21 TCGA-GC-A3RB-01 11 58379117 58379117 G C ZFP91 Missense_Mutation p.E255Q 0.45 tolerated(0.1) benign(0.007) TCGA-GC-A3RB-01 11 5878060 5878060 G T OR52E8 Silent p.A291A 0.35 TCGA-GC-A3RB-01 11 59540702 59540702 G A STX3 Missense_Mutation p.D17N 0.29 tolerated(0.13) benign(0.003) TCGA-GC-A3RB-01 11 59540705 59540705 G A STX3 Missense_Mutation p.D18N 0.28 deleterious(0.02) possibly_damaging(0.501) TCGA-GC-A3RB-01 11 66611253 66611253 G A RCE1 Missense_Mutation p.R70Q 0.30 deleterious(0.04) benign(0.024) TCGA-GC-A3RB-01 11 88323888 88323888 C T GRM5 Missense_Mutation p.R524Q 0.30 tolerated(0.17) probably_damaging(0.915) TCGA-GC-A3RB-01 12 100551433 100551433 C A AC010203.1 5'Flank 0.33 TCGA-GC-A3RB-01 12 104697751 104697751 C T EID3 Silent p.S13S 0.17 TCGA-GC-A3RB-01 12 106890641 106890641 G A POLR3B Missense_Mutation p.V977I 0.28 tolerated(0.94) benign(0.004) TCGA-GC-A3RB-01 12 110318126 110318126 G C GLTP Missense_Mutation p.I18M 0.34 deleterious(0.02) possibly_damaging(0.726) TCGA-GC-A3RB-01 12 110397701 110397701 G C GIT2 Silent p.L350L 0.26 TCGA-GC-A3RB-01 12 112696955 112696955 C G HECTD4 Silent p.L850L 0.05 TCGA-GC-A3RB-01 12 120901878 120901878 C T SRSF9 Missense_Mutation p.E133K 0.22 tolerated(0.34) probably_damaging(0.964) TCGA-GC-A3RB-01 12 122723263 122723263 A G VPS33A Silent p.N391N 0.31 TCGA-GC-A3RB-01 12 130926783 130926783 C T RIMBP2 Missense_Mutation p.E355K 0.17 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RB-01 12 18854476 18854476 C T PLCZ1 Missense_Mutation p.V326I 0.57 tolerated(0.19) benign(0.002) TCGA-GC-A3RB-01 12 2760832 2760832 C T CACNA1C Silent p.S1372S 0.16 TCGA-GC-A3RB-01 12 49406886 49406886 G C PRKAG1 Missense_Mutation p.S6C 0.63 tolerated_low_confidence(0.17) benign(0.037) TCGA-GC-A3RB-01 12 49445070 49445070 G - KMT2D Frame_Shift_Del p.P799Lfs*131 0.30 TCGA-GC-A3RB-01 12 49446856 49446856 C T KMT2D Splice_Site p.X319_splice 0.31 TCGA-GC-A3RB-01 12 53343177 53343177 A T KRT18 Missense_Mutation p.M74L 0.33 tolerated(0.35) benign(0.005) TCGA-GC-A3RB-01 12 55641322 55641322 C A OR6C74 Missense_Mutation p.A84E 0.04 deleterious_low_confidence(0.01) benign(0.177) TCGA-GC-A3RB-01 12 7459281 7459281 C T ACSM4 Silent p.A118A 0.71 TCGA-GC-A3RB-01 12 8691854 8691854 G A CLEC4E Missense_Mutation p.P60L 0.04 tolerated(0.69) benign(0.001) TCGA-GC-A3RB-01 12 93793095 93793095 T G NUDT4 Missense_Mutation p.D162E 0.03 tolerated_low_confidence(0.2) benign(0.005) TCGA-GC-A3RB-01 13 31309668 31309668 C A ALOX5AP 5'UTR 0.28 TCGA-GC-A3RB-01 14 20345191 20345191 C T OR4K2 Silent p.I255I 0.19 TCGA-GC-A3RB-01 14 21052007 21052007 G A RNASE11 3'UTR 0.30 TCGA-GC-A3RB-01 14 50779637 50779637 C T ATP5S 5'UTR 0.50 TCGA-GC-A3RB-01 14 75330507 75330507 G A PROX2 Nonsense_Mutation p.Q11* 0.24 TCGA-GC-A3RB-01 14 76548711 76548711 G A IFT43 Splice_Site p.X128_splice 0.29 TCGA-GC-A3RB-01 14 95590756 95590756 G A DICER1 Missense_Mutation p.R385C 0.40 deleterious(0) possibly_damaging(0.855) TCGA-GC-A3RB-01 15 27017603 27017603 G A GABRB3 Silent p.C62C 0.14 TCGA-GC-A3RB-01 15 35202345 35202345 C T AQR Missense_Mutation p.E552K 0.29 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RB-01 15 62456210 62456210 G A C2CD4B Missense_Mutation p.S325L 0.29 deleterious(0.01) benign(0.022) TCGA-GC-A3RB-01 15 64669028 64669028 G C KIAA0101 Missense_Mutation p.F68L 0.58 deleterious(0) possibly_damaging(0.699) TCGA-GC-A3RB-01 15 75761000 75761000 G T PTPN9 3'UTR 0.56 TCGA-GC-A3RB-01 15 81605711 81605711 G T STARD5 Missense_Mutation p.F176L 0.32 tolerated(0.16) possibly_damaging(0.709) TCGA-GC-A3RB-01 15 89169733 89169733 C T AEN Missense_Mutation p.A98V 0.25 tolerated(0.28) benign(0.001) TCGA-GC-A3RB-01 16 2029448 2029448 C G NOXO1 Missense_Mutation p.D271H 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-GC-A3RB-01 16 3405894 3405894 G A OR2C1 5'UTR 0.25 TCGA-GC-A3RB-01 16 71509173 71509173 G T ZNF19 Missense_Mutation p.S426Y 0.17 deleterious(0.02) probably_damaging(0.961) TCGA-GC-A3RB-01 16 72138398 72138398 G A DHX38 Missense_Mutation p.R675H 0.22 deleterious(0) probably_damaging(0.988) TCGA-GC-A3RB-01 16 81914556 81914556 G A PLCG2 Silent p.L230L 0.39 TCGA-GC-A3RB-01 17 19451306 19451306 G C SLC47A1 Silent p.G105G 0.33 TCGA-GC-A3RB-01 17 25967775 25967775 C T LGALS9 Silent p.F103F 0.33 TCGA-GC-A3RB-01 17 27031537 27031537 G A PROCA1 Intron 0.11 TCGA-GC-A3RB-01 17 27237353 27237353 G A PHF12 Silent p.I750I 0.95 TCGA-GC-A3RB-01 17 27254016 27254016 C T PHF12 Missense_Mutation p.R105H 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-GC-A3RB-01 17 28776730 28776730 C T CPD Silent p.L1011L 0.58 TCGA-GC-A3RB-01 17 35506883 35506883 T C ACACA Missense_Mutation p.I1862V 0.27 tolerated(1) benign(0.068) TCGA-GC-A3RB-01 17 39635732 39635732 C G KRT35 Missense_Mutation p.R193P 0.49 deleterious(0) probably_damaging(0.974) TCGA-GC-A3RB-01 17 44144914 44144914 C A KANSL1 Splice_Site p.X551_splice 0.46 TCGA-GC-A3RB-01 17 4497118 4497118 G C SMTNL2 Missense_Mutation p.E244D 0.12 tolerated(0.18) benign(0.006) TCGA-GC-A3RB-01 17 48561095 48561095 C T RSAD1 Missense_Mutation p.R361C 0.18 deleterious(0) probably_damaging(1) TCGA-GC-A3RB-01 17 56283666 56283666 C G MKS1 Missense_Mutation p.Q522H 0.23 deleterious(0) possibly_damaging(0.895) TCGA-GC-A3RB-01 17 59480480 59480480 A G TBX2 Missense_Mutation p.D241G 0.28 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RB-01 17 61787907 61787907 G A STRADA Silent p.I175I 0.28 TCGA-GC-A3RB-01 17 65942274 65942274 C T BPTF Missense_Mutation p.H2484Y 0.23 probably_damaging(0.946) TCGA-GC-A3RB-01 17 74037019 74037019 G A SRP68 Missense_Mutation p.S522L 0.47 deleterious(0.03) benign(0.025) TCGA-GC-A3RB-01 17 7579413 7579414 - C TP53 Frame_Shift_Ins p.P92Afs*57 0.48 TCGA-GC-A3RB-01 18 13826367 13826367 G A MC5R Silent p.L201L 0.26 TCGA-GC-A3RB-01 18 21948276 21948276 C A OSBPL1A Missense_Mutation p.R61I 0.35 deleterious(0.04) benign(0.189) TCGA-GC-A3RB-01 18 55221549 55221549 G T FECH Missense_Mutation p.D346E 0.14 tolerated(0.14) benign(0.245) TCGA-GC-A3RB-01 19 11537068 11537068 C G CCDC151 Missense_Mutation p.E287Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-GC-A3RB-01 19 12779345 12779345 C T WDR83OS Missense_Mutation p.M81I 0.38 tolerated(0.45) benign(0.014) TCGA-GC-A3RB-01 19 12779348 12779348 C T WDR83OS Missense_Mutation p.M80I 0.37 tolerated(1) benign(0.009) TCGA-GC-A3RB-01 19 12779429 12779429 C T WDR83OS Silent p.L53L 0.31 TCGA-GC-A3RB-01 19 14150702 14150702 C T IL27RA Nonsense_Mutation p.Q172* 0.13 TCGA-GC-A3RB-01 19 19216402 19216402 C T SLC25A42 Silent p.L82L 0.30 TCGA-GC-A3RB-01 19 19217162 19217162 C T SLC25A42 Silent p.V155V 0.27 TCGA-GC-A3RB-01 19 2191089 2191089 T A DOT1L Missense_Mutation p.Y115N 0.57 deleterious(0) probably_damaging(0.996) TCGA-GC-A3RB-01 19 44169569 44169569 G T PLAUR Nonsense_Mutation p.S70* 0.36 TCGA-GC-A3RB-01 19 44681738 44681738 A G ZNF226 Missense_Mutation p.R775G 0.08 deleterious(0.02) benign(0.075) TCGA-GC-A3RB-01 19 48981323 48981323 C T CYTH2 Intron 0.29 TCGA-GC-A3RB-01 19 49334931 49334931 C T HSD17B14 Silent p.L121L 0.26 TCGA-GC-A3RB-01 19 51410182 51410182 C A KLK4 3'UTR 0.27 TCGA-GC-A3RB-01 19 52496893 52496893 G C ZNF615 Missense_Mutation p.T490S 0.12 tolerated(0.05) benign(0.066) TCGA-GC-A3RB-01 19 53987047 53987047 A T ZNF813 5'UTR 0.21 TCGA-GC-A3RB-01 19 5600272 5600272 C G SAFB2 Splice_Site p.X520_splice 0.15 TCGA-GC-A3RB-01 19 56369402 56369402 C T NLRP4 Missense_Mutation p.P215S 0.29 tolerated(0.06) possibly_damaging(0.838) TCGA-GC-A3RB-01 19 58265972 58265972 G C ZNF776 Missense_Mutation p.E492Q 0.29 tolerated(0.16) probably_damaging(0.971) TCGA-GC-A3RB-01 19 886012 886012 C T MED16 Missense_Mutation p.V213M 0.14 deleterious(0.01) possibly_damaging(0.867) TCGA-GC-A3RB-01 1 102271652 102271652 C G OLFM3 Missense_Mutation p.A227P 0.10 tolerated(0.47) possibly_damaging(0.855) TCGA-GC-A3RB-01 1 109538452 109538452 G C WDR47 Missense_Mutation p.Q489E 0.22 tolerated(0.07) benign(0.156) TCGA-GC-A3RB-01 1 112525046 112525046 C T KCND3 Silent p.G101G 0.18 TCGA-GC-A3RB-01 1 116932065 116932065 C T ATP1A1 Silent p.T253T 0.19 TCGA-GC-A3RB-01 1 116932235 116932235 C G ATP1A1 Missense_Mutation p.S310C 0.23 tolerated(0.06) probably_damaging(0.958) TCGA-GC-A3RB-01 1 149398970 149398970 G C HIST2H3PS2 3'Flank 0.18 TCGA-GC-A3RB-01 1 150459941 150459941 G C TARS2 Missense_Mutation p.Q5H 0.08 deleterious_low_confidence(0.05) benign(0.003) TCGA-GC-A3RB-01 1 150460385 150460385 G A TARS2 Missense_Mutation p.E40K 0.12 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RB-01 1 150463886 150463886 G C TARS2 Missense_Mutation p.E177Q 0.11 deleterious(0.02) benign(0.021) TCGA-GC-A3RB-01 1 150532263 150532263 G A ADAMTSL4 Silent p.T990T 0.05 TCGA-GC-A3RB-01 1 151205150 151205150 C G PIP5K1A Missense_Mutation p.L204V 0.11 deleterious(0) probably_damaging(0.973) TCGA-GC-A3RB-01 1 152280743 152280743 C G FLG Missense_Mutation p.G2207R 0.04 probably_damaging(0.988) TCGA-GC-A3RB-01 1 152286605 152286605 C G FLG Missense_Mutation p.E253Q 0.15 possibly_damaging(0.637) TCGA-GC-A3RB-01 1 152287125 152287125 G A FLG Silent p.F79F 0.12 TCGA-GC-A3RB-01 1 153750936 153750936 C T SLC27A3 Intron 0.51 TCGA-GC-A3RB-01 1 157738266 157738266 T A FCRL2 Missense_Mutation p.Y274F 0.07 tolerated(0.07) probably_damaging(0.919) TCGA-GC-A3RB-01 1 160156461 160156461 G A ATP1A4 Missense_Mutation p.G1021D 0.13 deleterious(0.01) benign(0.381) TCGA-GC-A3RB-01 1 173735282 173735282 C T KLHL20 Intron 0.30 TCGA-GC-A3RB-01 1 180775611 180775611 C T XPR1 Missense_Mutation p.A200V 0.25 tolerated(0.11) benign(0.012) TCGA-GC-A3RB-01 1 196920122 196920122 C T CFHR2 Missense_Mutation p.R132W 0.60 deleterious(0.01) probably_damaging(0.96) TCGA-GC-A3RB-01 1 201185717 201185717 G A IGFN1 Missense_Mutation p.G3144D 0.26 probably_damaging(0.996) TCGA-GC-A3RB-01 1 20302318 20302318 C T PLA2G2A Missense_Mutation p.R104K 0.19 tolerated(0.49) benign(0.008) TCGA-GC-A3RB-01 1 213414318 213414318 C G RPS6KC1 Missense_Mutation p.S500C 0.36 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RB-01 1 214820493 214820493 T C CENPF Missense_Mutation p.L2527P 0.06 probably_damaging(0.999) TCGA-GC-A3RB-01 1 231472540 231472540 C T EXOC8 Missense_Mutation p.E318K 0.40 tolerated(0.19) benign(0.022) TCGA-GC-A3RB-01 1 235952011 235952011 G C LYST Missense_Mutation p.L1560V 0.22 deleterious(0.01) benign(0.03) TCGA-GC-A3RB-01 1 240286571 240286571 C T FMN2 Missense_Mutation p.L570F 0.19 unknown(0) TCGA-GC-A3RB-01 1 248525601 248525601 T C OR2T4 Missense_Mutation p.L240P 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-GC-A3RB-01 1 45226006 45226006 C T KIF2C Silent p.F474F 0.53 TCGA-GC-A3RB-01 1 52941116 52941116 C T ZCCHC11 Silent p.R705R 0.26 TCGA-GC-A3RB-01 1 89661003 89661003 C T GBP4 Missense_Mutation p.E114K 0.33 deleterious(0.01) probably_damaging(1) TCGA-GC-A3RB-01 1 9324107 9324107 C T H6PD Missense_Mutation p.R519W 0.09 deleterious(0.01) possibly_damaging(0.462) TCGA-GC-A3RB-01 1 95360474 95360474 G C SLC44A3 Missense_Mutation p.R653T 0.38 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-GC-A3RB-01 20 34063379 34063379 C T CEP250 Silent p.L542L 0.28 TCGA-GC-A3RB-01 20 6091073 6091074 - AACC FERMT1 Frame_Shift_Ins p.F206Lfs*4 0.40 TCGA-GC-A3RB-01 20 62198304 62198304 C T HELZ2 Missense_Mutation p.E803K 0.18 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RB-01 20 62198314 62198314 C T HELZ2 Silent p.L799L 0.18 TCGA-GC-A3RB-01 21 43161772 43161772 G A RIPK4 Silent p.N527N 0.17 TCGA-GC-A3RB-01 22 25023476 25023476 C A GGT1 Silent p.I366I 0.29 TCGA-GC-A3RB-01 22 37603104 37603104 G A SSTR3 Missense_Mutation p.R247W 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-GC-A3RB-01 22 41572411 41572411 C - EP300 Frame_Shift_Del p.Q1648Sfs*61 0.21 TCGA-GC-A3RB-01 22 41982104 41982104 C T PMM1 Missense_Mutation p.E61K 0.27 deleterious(0.02) possibly_damaging(0.58) TCGA-GC-A3RB-01 22 41982185 41982185 C G PMM1 Missense_Mutation p.E34Q 0.21 tolerated(0.07) benign(0.004) TCGA-GC-A3RB-01 22 44579263 44579263 C G PARVG Silent p.P18P 0.12 TCGA-GC-A3RB-01 22 46787080 46787080 C G CELSR1 Intron 0.28 TCGA-GC-A3RB-01 2 128945037 128945037 G A UGGT1 Missense_Mutation p.M1497I 0.10 tolerated(0.32) benign(0.101) TCGA-GC-A3RB-01 2 136603937 136603937 C T MCM6 Silent p.V693V 0.51 TCGA-GC-A3RB-01 2 160075859 160075859 C T TANC1 Silent p.F1163F 0.23 TCGA-GC-A3RB-01 2 167056103 167056103 C T SCN9A Silent p.E1671E 0.34 TCGA-GC-A3RB-01 2 179413607 179413607 C A TTN Missense_Mutation p.A30916S 0.15 TCGA-GC-A3RB-01 2 183730874 183730874 C T FRZB Missense_Mutation p.C136Y 0.26 tolerated(0.07) probably_damaging(1) TCGA-GC-A3RB-01 2 190554293 190554293 C G ANKAR Missense_Mutation p.I214M 0.24 deleterious(0) probably_damaging(0.985) TCGA-GC-A3RB-01 2 200173580 200173580 G A SATB2 Missense_Mutation p.P548L 0.28 deleterious(0.04) probably_damaging(0.99) TCGA-GC-A3RB-01 2 203152401 203152401 G T NOP58 Missense_Mutation p.L151F 0.24 deleterious(0.02) probably_damaging(0.912) TCGA-GC-A3RB-01 2 21258577 21258577 G A APOB Missense_Mutation p.R233C 0.44 benign(0.438) TCGA-GC-A3RB-01 2 217124125 217124125 G T MARCH4 Silent p.I381I 0.42 TCGA-GC-A3RB-01 2 219736442 219736442 G A WNT6 Silent p.G179G 0.30 TCGA-GC-A3RB-01 2 219886644 219886644 T C CCDC108 Silent p.E996E 0.85 TCGA-GC-A3RB-01 2 234638530 234638530 C T UGT1A3 Missense_Mutation p.S253F 0.12 deleterious(0) probably_damaging(1) TCGA-GC-A3RB-01 2 39085813 39085813 C G DHX57 Missense_Mutation p.R526P 0.17 tolerated(0.11) benign(0.33) TCGA-GC-A3RB-01 2 48602364 48602364 G A FOXN2 Missense_Mutation p.D360N 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-GC-A3RB-01 2 48874053 48874053 C G STON1-GTF2A1L Missense_Mutation p.H988D 0.21 tolerated(0.06) benign(0.05) TCGA-GC-A3RB-01 2 48925887 48925887 T C LHCGR Missense_Mutation p.I245V 0.38 tolerated(0.57) benign(0.042) TCGA-GC-A3RB-01 2 85604471 85604471 G A ELMOD3 Silent p.A204A 0.16 TCGA-GC-A3RB-01 2 90211753 90211753 C T IGKV3D-11 Missense_Mutation p.A5V 0.40 tolerated(0.07) benign(0.012) TCGA-GC-A3RB-01 3 113955575 113955575 C T ZNF80 Missense_Mutation p.R116H 0.35 tolerated(0.11) benign(0.008) TCGA-GC-A3RB-01 3 14508095 14508095 G C SLC6A6 Silent p.P268P 0.43 TCGA-GC-A3RB-01 3 148871395 148871395 G A HPS3 Missense_Mutation p.E454K 0.25 deleterious(0) probably_damaging(0.953) TCGA-GC-A3RB-01 3 15045491 15045491 C T NR2C2 Nonsense_Mutation p.Q24* 0.15 TCGA-GC-A3RB-01 3 4712527 4712527 G C ITPR1 Missense_Mutation p.E692D 0.20 tolerated(0.08) benign(0.015) TCGA-GC-A3RB-01 3 52439230 52439230 G A BAP1 Missense_Mutation p.P338S 0.44 tolerated_low_confidence(0.31) benign(0.007) TCGA-GC-A3RB-01 3 52474095 52474095 G T SEMA3G Missense_Mutation p.A388E 0.44 tolerated(0.09) benign(0.392) TCGA-GC-A3RB-01 3 86115879 86115879 C G CADM2 Missense_Mutation p.I420M 0.42 deleterious(0) probably_damaging(0.986) TCGA-GC-A3RB-01 4 114284603 114284603 G A ANK2 Silent p.E3622E 0.12 TCGA-GC-A3RB-01 4 155531252 155531252 C T FGG Missense_Mutation p.D167N 0.39 tolerated(0.09) probably_damaging(1) TCGA-GC-A3RB-01 4 186067010 186067011 - A SLC25A4 Frame_Shift_Ins p.T233Nfs*5 0.46 TCGA-GC-A3RB-01 4 186380148 186380148 T C CCDC110 Silent p.Q531Q 0.72 TCGA-GC-A3RB-01 4 48082134 48082134 T A TXK Missense_Mutation p.H323L 0.21 deleterious(0) probably_damaging(1) TCGA-GC-A3RB-01 4 48096215 48096215 C G TXK Silent p.T196T 0.22 TCGA-GC-A3RB-01 4 76797581 76797581 G A PPEF2 Silent p.S393S 0.41 TCGA-GC-A3RB-01 5 140616332 140616332 C G PCDHB18 RNA 0.36 TCGA-GC-A3RB-01 5 14693094 14693094 C A FAM105B Silent p.L332L 0.68 TCGA-GC-A3RB-01 5 175823491 175823491 G A CLTB Silent p.I169I 0.36 TCGA-GC-A3RB-01 5 176793178 176793178 A T RGS14 Missense_Mutation p.E23V 0.24 deleterious(0) probably_damaging(0.984) TCGA-GC-A3RB-01 5 3600252 3600252 C T IRX1 Missense_Mutation p.P397L 0.16 deleterious(0.04) benign(0.401) TCGA-GC-A3RB-01 5 68684860 68684860 G A RAD17 Splice_Site p.X310_splice 0.10 TCGA-GC-A3RB-01 5 7861273 7861273 G C FASTKD3 Missense_Mutation p.Q625E 0.42 tolerated(1) benign(0.006) TCGA-GC-A3RB-01 5 89815210 89815210 G A LYSMD3 Missense_Mutation p.S116F 0.31 deleterious(0.03) benign(0.157) TCGA-GC-A3RB-01 6 109763792 109763792 G C SMPD2 Missense_Mutation p.R152P 0.08 deleterious(0) probably_damaging(1) TCGA-GC-A3RB-01 6 127837781 127837781 G A SOGA3 5'UTR 0.07 TCGA-GC-A3RB-01 6 1313374 1313376 CAA - FOXQ1 In_Frame_Del p.N146del 0.25 TCGA-GC-A3RB-01 6 27839778 27839778 C G HIST1H3I Missense_Mutation p.E106Q 0.42 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-GC-A3RB-01 6 31084799 31084799 G C CDSN Missense_Mutation p.S198C 0.37 deleterious_low_confidence(0) unknown(0) TCGA-GC-A3RB-01 6 56473816 56473816 G A DST Intron 0.07 TCGA-GC-A3RB-01 6 82459570 82459570 C T FAM46A Missense_Mutation p.D391N 0.82 tolerated(0.09) benign(0.016) TCGA-GC-A3RB-01 6 90573259 90573259 G A CASP8AP2 RNA 0.93 TCGA-GC-A3RB-01 6 96651476 96651476 G A FUT9 Missense_Mutation p.E149K 0.43 tolerated(0.27) possibly_damaging(0.457) TCGA-GC-A3RB-01 7 100490233 100490233 C T ACHE Silent p.L425L 0.20 TCGA-GC-A3RB-01 7 100491541 100491541 C A ACHE Missense_Mutation p.D105Y 0.21 deleterious(0) probably_damaging(1) TCGA-GC-A3RB-01 7 1131766 1131766 G A GPER1 Silent p.S134S 0.21 TCGA-GC-A3RB-01 7 30891838 30891838 G C FAM188B Silent p.S518S 0.14 TCGA-GC-A3RB-01 7 33376191 33376191 G A BBS9 Missense_Mutation p.M385I 0.12 deleterious(0.04) benign(0.022) TCGA-GC-A3RB-01 7 44924070 44924070 C A PURB Missense_Mutation p.R293L 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-GC-A3RB-01 7 5410707 5410707 G A TNRC18 Missense_Mutation p.P1173L 0.21 possibly_damaging(0.805) TCGA-GC-A3RB-01 7 55236251 55236251 C A EGFR Intron 0.02 TCGA-GC-A3RB-01 7 90896136 90896136 C T FZD1 Silent p.V647V 0.26 TCGA-GC-A3RB-01 8 101719200 101719200 G A PABPC1 Silent p.I454I 0.13 TCGA-GC-A3RB-01 8 116616194 116616194 C G TRPS1 Missense_Mutation p.D668H 0.13 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-GC-A3RB-01 8 133913623 133913623 G C TG Missense_Mutation p.K1153N 0.32 deleterious(0.04) benign(0.259) TCGA-GC-A3RB-01 8 145697780 145697780 C G KIFC2 Silent p.A548A 0.17 TCGA-GC-A3RB-01 8 145732224 145732224 C T GPT Silent p.F466F 0.81 TCGA-GC-A3RB-01 8 54708314 54708314 G C ATP6V1H Missense_Mutation p.Q255E 0.41 tolerated(1) benign(0.03) TCGA-GC-A3RB-01 8 72981353 72981353 G A TRPA1 Missense_Mutation p.L117F 0.18 deleterious(0) probably_damaging(1) TCGA-GC-A3RB-01 8 95523769 95523769 G A KIAA1429 Missense_Mutation p.L1012F 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A3RB-01 8 96259844 96259844 C T C8orf37 3'UTR 0.08 TCGA-GC-A3RB-01 9 130570856 130570856 C T FPGS Missense_Mutation p.P281L 0.32 deleterious(0) probably_damaging(0.933) TCGA-GC-A3RB-01 9 132584943 132584943 C T TOR1A Missense_Mutation p.E121K 0.19 tolerated(1) benign(0.034) TCGA-GC-A3RB-01 9 136634579 136634579 G A VAV2 Silent p.L798L 0.16 TCGA-GC-A3RB-01 9 19380202 19380202 A T RPS6 5'UTR 0.33 TCGA-GC-A3RB-01 9 32450097 32450097 G C ACO1 Missense_Mutation p.K886N 0.31 tolerated(0.5) benign(0.023) TCGA-GC-A3RB-01 9 32629973 32629973 G C TAF1L 3'UTR 0.67 TCGA-GC-A3RB-01 9 33943441 33943441 G A UBAP2 Silent p.I564I 0.31 TCGA-GC-A3RB-01 9 34017107 34017107 G A UBAP2 Missense_Mutation p.R14W 0.14 tolerated(0.26) probably_damaging(0.983) TCGA-GC-A3RB-01 9 34996695 34996695 C G DNAJB5 Missense_Mutation p.I329M 0.24 deleterious(0) probably_damaging(0.981) TCGA-GC-A3RB-01 9 43624988 43624988 C G SPATA31A6 Missense_Mutation p.Q1233H 0.14 tolerated(0.06) benign(0.106) TCGA-GC-A3RB-01 9 69391147 69391147 C G ANKRD20A4 Missense_Mutation p.L219V 0.14 tolerated(0.05) possibly_damaging(0.744) TCGA-GC-A3RB-01 9 72131394 72131394 C T APBA1 Missense_Mutation p.E245K 0.39 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-GC-A3RB-01 9 78937994 78937994 G A PCSK5 Missense_Mutation p.D1350N 0.29 tolerated(0.55) benign(0.001) TCGA-GC-A3RB-01 9 86452212 86452212 G A KIF27 Missense_Mutation p.P1304S 0.20 tolerated(0.25) benign(0.002) TCGA-GC-A3RB-01 9 96214620 96214620 C G FAM120A Silent p.P141P 0.11 TCGA-GC-A3RB-01 X 101095527 101095527 T C NXF5 Silent p.L214L 0.16 TCGA-GC-A3RB-01 X 117578414 117578414 C G WDR44 Missense_Mutation p.N868K 0.43 tolerated(0.59) benign(0.002) TCGA-GC-A3RB-01 X 129148656 129148656 G A BCORL1 Silent p.P636P 0.41 TCGA-GC-A3RB-01 X 48650333 48650333 G A GATA1 Silent p.T101T 0.90 TCGA-GC-A3RB-01 X 69262998 69262998 A T AWAT2 Missense_Mutation p.C190S 0.27 tolerated(0.91) probably_damaging(0.999) TCGA-GC-A3RC-01 10 101473167 101473167 C T COX15 3'Flank 0.36 TCGA-GC-A3RC-01 10 103990676 103990676 C T PITX3 Silent p.K168K 0.36 TCGA-GC-A3RC-01 10 104121532 104121532 G A GBF1 Missense_Mutation p.E516K 0.35 deleterious(0) probably_damaging(0.995) TCGA-GC-A3RC-01 10 105657330 105657330 C T OBFC1 Silent p.V243V 0.36 TCGA-GC-A3RC-01 10 105785423 105785423 A G SLK Missense_Mutation p.Q1218R 0.54 tolerated(0.05) benign(0.339) TCGA-GC-A3RC-01 10 12197894 12197894 A T SEC61A2 Nonsense_Mutation p.K194* 0.31 TCGA-GC-A3RC-01 10 123846947 123846947 T C TACC2 Silent p.P1644P 0.44 TCGA-GC-A3RC-01 10 69597861 69597861 A G DNAJC12 5'UTR 0.53 TCGA-GC-A3RC-01 10 70105549 70105549 C T RUFY2 Silent p.Q634Q 0.26 TCGA-GC-A3RC-01 10 73574927 73574927 G C CDH23 Missense_Mutation p.E1079D 0.31 tolerated_low_confidence(0.76) benign(0.021) TCGA-GC-A3RC-01 10 81049571 81049571 G A ZMIZ1 Silent p.Q155Q 0.15 TCGA-GC-A3RC-01 10 88719796 88719796 G A SNCG Missense_Mutation p.E68K 0.45 tolerated(0.15) possibly_damaging(0.642) TCGA-GC-A3RC-01 10 91061883 91061883 G A IFIT2 Translation_Start_Site p.M1? 0.26 deleterious(0.03) unknown(0) TCGA-GC-A3RC-01 10 94294474 94294474 T C IDE Missense_Mutation p.T118A 0.31 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 10 95848916 95848916 A G PLCE1 Intron 0.30 TCGA-GC-A3RC-01 10 96707616 96707616 G C CYP2C9 Missense_Mutation p.D188H 0.34 deleterious(0.02) benign(0.372) TCGA-GC-A3RC-01 10 98307747 98307747 C T TM9SF3 Splice_Site p.X320_splice 0.45 TCGA-GC-A3RC-01 10 98312731 98312731 C T TM9SF3 Missense_Mutation p.R249K 0.33 tolerated(0.4) possibly_damaging(0.773) TCGA-GC-A3RC-01 11 101359784 101359784 C G TRPC6 Missense_Mutation p.E393Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-GC-A3RC-01 11 10327868 10327888 CCCGCCCGCAGCAGTCCGGAT - ADM Splice_Site p.X83_splice 0.41 TCGA-GC-A3RC-01 11 111636068 111636068 A G PPP2R1B Missense_Mutation p.L52P 0.34 deleterious(0.01) benign(0.213) TCGA-GC-A3RC-01 11 111749797 111749797 C T FDXACB1 Silent p.L20L 0.14 TCGA-GC-A3RC-01 11 118209836 118209836 C T CD3D 3'UTR 0.18 TCGA-GC-A3RC-01 11 118374637 118374637 C G KMT2A Nonsense_Mutation p.S2677* 0.39 TCGA-GC-A3RC-01 11 13410595 13410595 G T BTBD10 Missense_Mutation p.S404Y 0.29 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 11 18048081 18048081 A C TPH1 Silent p.T253T 0.45 TCGA-GC-A3RC-01 11 19259556 19259570 TGGTAGGTGTGGTTA - E2F8 Nonsense_Mutation p.L42_K47delins* 0.51 TCGA-GC-A3RC-01 11 43515473 43515473 C G TTC17 3'UTR 0.08 TCGA-GC-A3RC-01 11 56127857 56127857 C T OR8J1 Silent p.I45I 0.40 TCGA-GC-A3RC-01 11 57947216 57947216 G A OR9Q1 Silent p.Q100Q 0.40 TCGA-GC-A3RC-01 11 60105401 60105401 G A MS4A6E Missense_Mutation p.R112K 0.38 tolerated(0.91) benign(0.002) TCGA-GC-A3RC-01 11 608824 608824 G A PHRF1 Missense_Mutation p.C1122Y 0.12 tolerated(0.28) probably_damaging(0.919) TCGA-GC-A3RC-01 11 62301534 62301534 C A AHNAK Nonsense_Mutation p.E119* 0.32 TCGA-GC-A3RC-01 11 62553845 62553845 C T TAF6L Silent p.V358V 0.18 TCGA-GC-A3RC-01 11 65265440 65265463 CCAGGTGGTGGTATTTAGATAAAA - MALAT1 RNA 0.30 TCGA-GC-A3RC-01 11 6643027 6643027 T C DCHS1 Missense_Mutation p.T3294A 0.45 tolerated(1) benign(0.001) TCGA-GC-A3RC-01 11 73498985 73498985 T A MRPL48 5'UTR 0.43 TCGA-GC-A3RC-01 11 73681096 73681096 C T DNAJB13 Silent p.I296I 0.16 TCGA-GC-A3RC-01 11 74323962 74323962 T C POLD3 Missense_Mutation p.V100A 0.44 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RC-01 11 82444591 82444591 C T FAM181B Missense_Mutation p.E61K 0.55 deleterious(0) possibly_damaging(0.81) TCGA-GC-A3RC-01 11 9167352 9167352 G A DENND5A Silent p.Y956Y 0.43 TCGA-GC-A3RC-01 12 100377945 100377945 G T ANKS1B Missense_Mutation p.S24Y 0.23 deleterious(0) possibly_damaging(0.803) TCGA-GC-A3RC-01 12 101685532 101685532 G A UTP20 Missense_Mutation p.D302N 0.31 tolerated(0.21) benign(0.003) TCGA-GC-A3RC-01 12 109935699 109935699 G A UBE3B Missense_Mutation p.V264M 0.32 tolerated(0.05) benign(0.021) TCGA-GC-A3RC-01 12 110643430 110643430 G C IFT81 Missense_Mutation p.D583H 0.28 tolerated(0.09) benign(0.023) TCGA-GC-A3RC-01 12 110956514 110956514 T C RAD9B Missense_Mutation p.V210A 0.29 deleterious(0) possibly_damaging(0.547) TCGA-GC-A3RC-01 12 113306440 113306440 A G RPH3A Intron 0.37 TCGA-GC-A3RC-01 12 120995374 120995374 T C RNF10 Missense_Mutation p.Y286H 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-GC-A3RC-01 12 122213008 122213008 C G TMEM120B Missense_Mutation p.S293C 0.48 deleterious(0.02) benign(0.248) TCGA-GC-A3RC-01 12 123645694 123645694 C G MPHOSPH9 Missense_Mutation p.E972Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RC-01 12 123645916 123645916 C T MPHOSPH9 Missense_Mutation p.E898K 0.26 tolerated(0.08) possibly_damaging(0.798) TCGA-GC-A3RC-01 12 123645931 123645931 C G MPHOSPH9 Splice_Site p.X893_splice 0.27 TCGA-GC-A3RC-01 12 13526188 13526188 C G C12orf36 Missense_Mutation p.E123Q 0.24 benign(0.005) TCGA-GC-A3RC-01 12 25149195 25149195 G C C12orf77 Missense_Mutation p.Q28E 0.16 deleterious_low_confidence(0.02) benign(0.388) TCGA-GC-A3RC-01 12 28123155 28123155 G A PTHLH 5'UTR 0.44 TCGA-GC-A3RC-01 12 29786270 29786270 C A TMTC1 Splice_Site p.X313_splice 0.39 TCGA-GC-A3RC-01 12 40687375 40687375 G C LRRK2 Missense_Mutation p.K906N 0.56 deleterious(0.05) benign(0.183) TCGA-GC-A3RC-01 12 40728880 40728880 C T LRRK2 Missense_Mutation p.R1957C 0.24 deleterious(0.03) probably_damaging(0.94) TCGA-GC-A3RC-01 12 41337465 41337465 T C CNTN1 Silent p.Y482Y 0.27 TCGA-GC-A3RC-01 12 46757568 46757568 A C SLC38A2 Missense_Mutation p.F332C 0.45 deleterious(0) probably_damaging(0.976) TCGA-GC-A3RC-01 12 4702231 4702231 C T DYRK4 Missense_Mutation p.A61V 0.22 deleterious(0.02) benign(0.03) TCGA-GC-A3RC-01 12 49726986 49726986 C G C1QL4 Missense_Mutation p.D190H 0.33 deleterious(0) possibly_damaging(0.897) TCGA-GC-A3RC-01 12 50571654 50571654 T A LIMA1 Silent p.P492P 0.24 TCGA-GC-A3RC-01 12 51065124 51065124 G A DIP2B Missense_Mutation p.G195R 0.58 tolerated(0.2) benign(0.032) TCGA-GC-A3RC-01 12 52115497 52115497 C G SCN8A Silent p.L601L 0.31 TCGA-GC-A3RC-01 12 56349560 56349560 C T PMEL Intron 0.23 TCGA-GC-A3RC-01 12 56500804 56500804 A G RP11-603J24.9 Missense_Mutation p.N64S 0.28 deleterious(0) possibly_damaging(0.834) TCGA-GC-A3RC-01 12 569632 569632 C A B4GALNT3 Silent p.A30A 0.40 TCGA-GC-A3RC-01 12 57992965 57992965 C T PIP4K2C Missense_Mutation p.L211F 0.33 deleterious(0.04) probably_damaging(1) TCGA-GC-A3RC-01 12 60168667 60168667 C G SLC16A7 Silent p.P197P 0.62 TCGA-GC-A3RC-01 12 6637881 6637881 G A NCAPD2 Silent p.A1112A 0.10 TCGA-GC-A3RC-01 12 66932910 66932910 C G GRIP1 Missense_Mutation p.K122N 0.05 deleterious(0) probably_damaging(0.988) TCGA-GC-A3RC-01 12 69652399 69652416 GGTCCTCCAGGCCCACCT - CPSF6 In_Frame_Del p.G248_P253del 0.24 TCGA-GC-A3RC-01 12 7064630 7064630 C T PTPN6 Silent p.G243G 0.15 TCGA-GC-A3RC-01 12 72050617 72050617 T G ZFC3H1 Intron 0.28 TCGA-GC-A3RC-01 12 96077360 96077360 C T NTN4 Silent p.V436V 0.27 TCGA-GC-A3RC-01 12 97114276 97114276 G C C12orf55 Missense_Mutation p.E2300Q 0.33 deleterious(0) benign(0.002) TCGA-GC-A3RC-01 13 100634397 100634397 G A ZIC2 Missense_Mutation p.A27T 0.44 tolerated_low_confidence(0.4) possibly_damaging(0.483) TCGA-GC-A3RC-01 13 109858981 109858981 G C MYO16 Missense_Mutation p.E1792Q 0.15 deleterious_low_confidence(0.05) benign(0.025) TCGA-GC-A3RC-01 13 25484207 25484207 C T CENPJ Missense_Mutation p.D196N 0.44 tolerated(0.1) benign(0.327) TCGA-GC-A3RC-01 13 41657094 41657094 A G WBP4 3'UTR 0.83 TCGA-GC-A3RC-01 13 46619528 46619529 - TGCTGTACTGCCAG ZC3H13 Frame_Shift_Ins p.E39Lfs*13 0.15 TCGA-GC-A3RC-01 13 48985570 48985570 T C LPAR6 Silent p.L330L 0.74 TCGA-GC-A3RC-01 13 67799881 67799881 C T PCDH9 Missense_Mutation p.E898K 0.42 tolerated(0.17) possibly_damaging(0.595) TCGA-GC-A3RC-01 13 67800603 67800603 G C PCDH9 Missense_Mutation p.S657C 0.22 deleterious(0) probably_damaging(0.995) TCGA-GC-A3RC-01 13 84455102 84455102 G A SLITRK1 Missense_Mutation p.H181Y 0.37 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 13 92345689 92345689 G A GPC5 Missense_Mutation p.E192K 0.34 deleterious(0) possibly_damaging(0.7) TCGA-GC-A3RC-01 14 100380990 100380990 T C EML1 Missense_Mutation p.W589R 0.31 deleterious(0) probably_damaging(0.996) TCGA-GC-A3RC-01 14 103465928 103465928 G A CDC42BPB Silent p.S190S 0.39 TCGA-GC-A3RC-01 14 104165252 104165252 G A XRCC3 Silent p.L308L 0.58 TCGA-GC-A3RC-01 14 105360120 105360120 T C CEP170B Missense_Mutation p.L1402P 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-GC-A3RC-01 14 105477759 105477759 C G CDCA4 Missense_Mutation p.E170Q 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-GC-A3RC-01 14 105685546 105685546 G C BRF1 Silent p.A467A 0.36 TCGA-GC-A3RC-01 14 32562753 32562753 C G ARHGAP5 Missense_Mutation p.Q960E 0.54 tolerated(0.84) benign(0.006) TCGA-GC-A3RC-01 14 36004326 36004326 G C INSM2 Missense_Mutation p.E290Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RC-01 14 45414407 45414407 T C KLHL28 Missense_Mutation p.H242R 0.27 tolerated(0.5) benign(0.001) TCGA-GC-A3RC-01 14 65008896 65008896 G A HSPA2 Silent p.V443V 0.13 TCGA-GC-A3RC-01 14 65197646 65197646 C G PLEKHG3 Silent p.L176L 0.24 TCGA-GC-A3RC-01 14 67787792 67787792 G A MPP5 Missense_Mutation p.R519Q 0.35 deleterious(0.02) probably_damaging(0.945) TCGA-GC-A3RC-01 14 75412913 75412913 C G PGF Intron 0.17 TCGA-GC-A3RC-01 14 75988974 75988974 G A BATF 5'UTR 0.42 TCGA-GC-A3RC-01 14 93273263 93273263 C G GOLGA5 Missense_Mutation p.Q243E 0.15 tolerated(0.08) benign(0.098) TCGA-GC-A3RC-01 14 94156520 94156520 G A UNC79 Silent p.L2243L 0.39 TCGA-GC-A3RC-01 14 94528602 94528602 C T DDX24 Missense_Mutation p.D362N 0.32 tolerated(0.19) benign(0.015) TCGA-GC-A3RC-01 15 29346528 29346528 G A APBA2 Silent p.P147P 0.22 TCGA-GC-A3RC-01 15 29400577 29400577 C T APBA2 Silent p.S674S 0.23 TCGA-GC-A3RC-01 15 39910077 39910077 C T FSIP1 Missense_Mutation p.D520N 0.51 tolerated(0.37) possibly_damaging(0.484) TCGA-GC-A3RC-01 15 40268620 40268620 G A EIF2AK4 Silent p.Q608Q 0.51 TCGA-GC-A3RC-01 15 41319809 41319809 A G INO80 Silent p.C1011C 0.24 TCGA-GC-A3RC-01 15 42003336 42003336 C G MGA Missense_Mutation p.T958S 0.20 tolerated(0.56) benign(0.004) TCGA-GC-A3RC-01 15 42374548 42374548 C T PLA2G4D Missense_Mutation p.G238R 0.26 tolerated(0.25) benign(0.001) TCGA-GC-A3RC-01 15 42447712 42447712 C T PLA2G4F Intron 0.42 TCGA-GC-A3RC-01 15 44067580 44067580 C T ELL3 Splice_Site p.X190_splice 0.44 TCGA-GC-A3RC-01 15 44067925 44067925 C A ELL3 Nonsense_Mutation p.E160* 0.53 TCGA-GC-A3RC-01 15 48063558 48063558 C T SEMA6D Missense_Mutation p.P933L 0.27 deleterious(0.03) benign(0.199) TCGA-GC-A3RC-01 15 53081358 53081358 C A ONECUT1 Missense_Mutation p.V242L 0.51 tolerated(0.38) benign(0.165) TCGA-GC-A3RC-01 15 65739178 65739178 G T DPP8 3'UTR 0.20 TCGA-GC-A3RC-01 15 65782623 65782623 C G DPP8 Missense_Mutation p.E260Q 0.15 tolerated(0.53) probably_damaging(0.998) TCGA-GC-A3RC-01 15 66587330 66587330 G A DIS3L Silent p.G48G 0.34 TCGA-GC-A3RC-01 15 66587451 66587451 C G DIS3L Missense_Mutation p.Q89E 0.28 tolerated(0.07) benign(0.067) TCGA-GC-A3RC-01 15 74628313 74628317 GCCCC - CCDC33 Frame_Shift_Del p.E729Dfs*8 0.27 TCGA-GC-A3RC-01 15 74836783 74836783 C T ARID3B Missense_Mutation p.S169F 0.28 deleterious(0.02) possibly_damaging(0.739) TCGA-GC-A3RC-01 15 75498410 75498410 G A C15orf39 Silent p.L7L 0.58 TCGA-GC-A3RC-01 15 81605528 81605540 CTTGGTGTCCCAA - STARD5 3'UTR 0.20 TCGA-GC-A3RC-01 15 84539658 84539658 G A ADAMTSL3 Missense_Mutation p.E303K 0.57 deleterious(0) benign(0.273) TCGA-GC-A3RC-01 16 11051690 11051690 G A CLEC16A Silent p.R44R 0.59 TCGA-GC-A3RC-01 16 21042362 21042366 CTTAC - DNAH3 Splice_Site p.X1813_splice 0.69 TCGA-GC-A3RC-01 16 227392 227392 G A HBA1 Silent p.L137L 0.44 TCGA-GC-A3RC-01 16 24578652 24578652 C T RBBP6 Missense_Mutation p.P593L 0.69 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-GC-A3RC-01 16 27246541 27246541 C T NSMCE1 Silent p.K72K 0.68 TCGA-GC-A3RC-01 16 30078325 30078325 T G ALDOA Missense_Mutation p.L36R 0.62 deleterious_low_confidence(0) benign(0.208) TCGA-GC-A3RC-01 16 3807879 3807879 C G CREBBP Missense_Mutation p.K1180N 0.55 unknown(0) TCGA-GC-A3RC-01 16 49672418 49672418 G A ZNF423 Silent p.T215T 0.75 TCGA-GC-A3RC-01 16 56906306 56906306 A G SLC12A3 Missense_Mutation p.N299S 0.57 tolerated(0.07) possibly_damaging(0.591) TCGA-GC-A3RC-01 16 57949211 57949211 T C CNGB1 Missense_Mutation p.D749G 0.65 deleterious(0) probably_damaging(0.994) TCGA-GC-A3RC-01 16 58545509 58545509 G A NDRG4 3'UTR 0.47 TCGA-GC-A3RC-01 16 68009695 68009695 G A DPEP3 Silent p.I505I 0.75 TCGA-GC-A3RC-01 16 70048029 70048029 A G PDXDC2P RNA 0.67 TCGA-GC-A3RC-01 16 726418 726418 C T RHBDL1 Missense_Mutation p.P106L 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-GC-A3RC-01 16 89789220 89789220 G A ZNF276 Missense_Mutation p.G163S 0.53 tolerated(0.07) benign(0.043) TCGA-GC-A3RC-01 16 90015915 90015915 G A DEF8 Silent p.A14A 0.46 TCGA-GC-A3RC-01 16 9923389 9923389 A G GRIN2A Missense_Mutation p.V633A 0.72 deleterious(0) possibly_damaging(0.906) TCGA-GC-A3RC-01 17 15641362 15641362 G T TBC1D26 Missense_Mutation p.D84Y 0.50 deleterious(0.01) possibly_damaging(0.754) TCGA-GC-A3RC-01 17 25758255 25758255 C T TBC1D3P5 RNA 0.16 TCGA-GC-A3RC-01 17 26097944 26097944 C T NOS2 Missense_Mutation p.G602R 0.36 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 17 27051282 27051282 A G RPL23A 3'UTR 0.47 TCGA-GC-A3RC-01 17 27945821 27945821 C T CORO6 Missense_Mutation p.G207D 0.26 deleterious(0.01) benign(0.357) TCGA-GC-A3RC-01 17 28964159 28964159 C G LRRC37BP1 RNA 0.33 TCGA-GC-A3RC-01 17 29557345 29557345 G A NF1 Missense_Mutation p.E1020K 0.45 tolerated(0.09) benign(0.03) TCGA-GC-A3RC-01 17 35914064 35914064 T A SYNRG Missense_Mutation p.K587N 0.71 tolerated_low_confidence(0.09) possibly_damaging(0.705) TCGA-GC-A3RC-01 17 42635140 42635140 G A FZD2 Silent p.E28E 0.31 TCGA-GC-A3RC-01 17 42853520 42853520 G A ADAM11 Missense_Mutation p.R504Q 0.43 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 17 43012728 43012728 C T KIF18B Missense_Mutation p.G124R 0.60 tolerated(0.24) benign(0.081) TCGA-GC-A3RC-01 17 44788430 44788430 G A NSF Silent p.L524L 0.56 TCGA-GC-A3RC-01 17 46133814 46133814 G - NFE2L1 Frame_Shift_Del p.D193Tfs*37 0.14 TCGA-GC-A3RC-01 17 46607197 46607197 G A HOXB1 Silent p.L206L 0.25 TCGA-GC-A3RC-01 17 4849962 4849962 C T PFN1 Missense_Mutation p.A96T 0.20 tolerated(0.22) benign(0.035) TCGA-GC-A3RC-01 17 5347506 5347506 G A DHX33 3'UTR 0.43 TCGA-GC-A3RC-01 17 5445293 5445293 C T NLRP1 Silent p.L861L 0.24 TCGA-GC-A3RC-01 17 56582854 56582854 C T MTMR4 Missense_Mutation p.S361N 0.21 deleterious(0.04) benign(0.299) TCGA-GC-A3RC-01 17 7094036 7094036 C G DLG4 Missense_Mutation p.E765D 0.18 tolerated(0.25) benign(0.132) TCGA-GC-A3RC-01 17 73623551 73623551 C A RECQL5 Missense_Mutation p.R976L 0.45 deleterious(0) possibly_damaging(0.877) TCGA-GC-A3RC-01 17 7490058 7490058 C T MPDU1 Silent p.C117C 0.26 TCGA-GC-A3RC-01 17 7572963 7572963 T - TP53 Frame_Shift_Del p.K382Nfs*40 0.34 TCGA-GC-A3RC-01 17 76122887 76122887 G A TMC6 Silent p.L9L 0.19 TCGA-GC-A3RC-01 17 76989577 76989577 C T CANT1 3'UTR 0.21 TCGA-GC-A3RC-01 17 78933912 78933912 G A RPTOR Missense_Mutation p.S1171N 0.15 tolerated(0.08) benign(0.417) TCGA-GC-A3RC-01 17 8044493 8044493 C T PER1 Missense_Mutation p.G1256S 0.27 tolerated_low_confidence(0.61) benign(0.006) TCGA-GC-A3RC-01 17 8076894 8076894 C T TMEM107 3'Flank 0.17 TCGA-GC-A3RC-01 17 9604544 9604544 C G USP43 Missense_Mutation p.F548L 0.40 tolerated(1) benign(0.002) TCGA-GC-A3RC-01 18 11852005 11852005 C G CHMP1B Missense_Mutation p.N165K 0.50 tolerated(0.61) benign(0.114) TCGA-GC-A3RC-01 18 12358835 12358835 C A AFG3L2 Missense_Mutation p.G287V 0.21 deleterious(0) possibly_damaging(0.891) TCGA-GC-A3RC-01 18 21046190 21046190 G A RIOK3 Missense_Mutation p.E213K 0.29 deleterious(0.03) probably_damaging(0.971) TCGA-GC-A3RC-01 18 2578122 2578122 G A NDC80 Missense_Mutation p.R153K 0.49 tolerated(0.36) benign(0.018) TCGA-GC-A3RC-01 18 320043 320043 C T COLEC12 3'UTR 0.22 TCGA-GC-A3RC-01 18 47812527 47812533 CCCTCCA - CXXC1 Frame_Shift_Del p.G107Afs*82 0.42 TCGA-GC-A3RC-01 18 56390406 56390406 C T MALT1 Missense_Mutation p.S382L 0.38 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 18 7013975 7013975 T C LAMA1 Missense_Mutation p.K1068E 0.16 tolerated(1) benign(0.004) TCGA-GC-A3RC-01 18 77210968 77210968 G C NFATC1 Missense_Mutation p.G522A 0.35 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 19 11038321 11038321 G A YIPF2 Silent p.D88D 0.46 TCGA-GC-A3RC-01 19 12035974 12035974 G A ZNF763 5'UTR 0.32 TCGA-GC-A3RC-01 19 1257191 1257191 G A MIDN Missense_Mutation p.G443S 0.59 tolerated_low_confidence(1) possibly_damaging(0.862) TCGA-GC-A3RC-01 19 13220477 13220477 C A TRMT1 Nonsense_Mutation p.E400* 0.28 TCGA-GC-A3RC-01 19 13223540 13223540 C A TRMT1 Missense_Mutation p.K283N 0.17 deleterious(0) possibly_damaging(0.604) TCGA-GC-A3RC-01 19 13226568 13226568 C G TRMT1 Missense_Mutation p.E109Q 0.24 deleterious(0.02) possibly_damaging(0.889) TCGA-GC-A3RC-01 19 13882933 13882933 A G MRI1 Splice_Site p.X317_splice 0.53 TCGA-GC-A3RC-01 19 14065247 14065247 A C DCAF15 Silent p.A76A 0.20 TCGA-GC-A3RC-01 19 15757870 15757874 GTACC - CYP4F3 Frame_Shift_Del p.V118Kfs*23 0.19 TCGA-GC-A3RC-01 19 17132940 17132940 G A CPAMD8 Silent p.V95V 0.55 TCGA-GC-A3RC-01 19 17937456 17937456 C G JAK3 3'UTR 0.19 TCGA-GC-A3RC-01 19 18705189 18705189 C G CRLF1 Silent p.S360S 0.36 TCGA-GC-A3RC-01 19 35450251 35450251 C T ZNF792 Missense_Mutation p.E170K 0.41 tolerated(0.48) benign(0.002) TCGA-GC-A3RC-01 19 35773490 35773501 AGCTCCCAGATC - HAMP In_Frame_Del p.S4_I7del 0.23 TCGA-GC-A3RC-01 19 35993780 35993780 G A DMKN Silent p.V381V 0.31 TCGA-GC-A3RC-01 19 36605793 36605793 C T POLR2I 5'UTR 0.47 TCGA-GC-A3RC-01 19 3982047 3982047 G A EEF2 Silent p.Y265Y 0.52 TCGA-GC-A3RC-01 19 41086561 41086561 A G SHKBP1 Missense_Mutation p.R218G 0.31 deleterious(0) possibly_damaging(0.806) TCGA-GC-A3RC-01 19 41383229 41383229 A G CYP2A7 Missense_Mutation p.F343L 0.44 tolerated(0.66) possibly_damaging(0.557) TCGA-GC-A3RC-01 19 42856512 42856512 G A MEGF8 Missense_Mutation p.C1018Y 0.57 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 19 4359177 4359177 C T MPND Silent p.F418F 0.46 TCGA-GC-A3RC-01 19 4366967 4366967 C A SH3GL1 Missense_Mutation p.A24S 0.23 deleterious(0) possibly_damaging(0.688) TCGA-GC-A3RC-01 19 44536804 44536804 C T ZNF222 Missense_Mutation p.S366L 0.37 deleterious(0.01) possibly_damaging(0.878) TCGA-GC-A3RC-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.23 deleterious(0) probably_damaging(0.979) TCGA-GC-A3RC-01 19 47844630 47844630 G A C5AR2 Missense_Mutation p.G192S 0.41 tolerated(0.13) possibly_damaging(0.566) TCGA-GC-A3RC-01 19 49496351 49496351 A C GYS1 Missense_Mutation p.L7V 0.35 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-GC-A3RC-01 19 49658510 49658510 G T HRC 5'UTR 0.50 TCGA-GC-A3RC-01 19 49852004 49852004 C T TEAD2 Missense_Mutation p.V235I 0.47 tolerated(0.13) benign(0.001) TCGA-GC-A3RC-01 19 51883515 51883515 C G LIM2 Silent p.G196G 0.12 TCGA-GC-A3RC-01 19 52497266 52497266 C T ZNF615 Missense_Mutation p.E366K 0.32 tolerated(0.29) possibly_damaging(0.736) TCGA-GC-A3RC-01 19 54377621 54377621 A C MYADM Missense_Mutation p.S280R 0.23 tolerated(0.71) benign(0.005) TCGA-GC-A3RC-01 19 54647749 54647749 A G CNOT3 Missense_Mutation p.E89G 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-GC-A3RC-01 19 59010912 59010912 G - SLC27A5 Frame_Shift_Del p.M539Wfs*63 0.33 TCGA-GC-A3RC-01 19 7518413 7518413 C G ARHGEF18 Nonsense_Mutation p.S451* 0.21 TCGA-GC-A3RC-01 1 101704478 101704478 C G S1PR1 5'UTR 0.31 TCGA-GC-A3RC-01 1 109957934 109957934 C G PSMA5 Missense_Mutation p.V50L 0.48 deleterious(0) possibly_damaging(0.593) TCGA-GC-A3RC-01 1 110199865 110199865 G A GSTM4 Silent p.L47L 0.30 TCGA-GC-A3RC-01 1 113615999 113615999 T G LRIG2 5'UTR 0.51 TCGA-GC-A3RC-01 1 116655176 116655176 C T MAB21L3 5'UTR 0.55 TCGA-GC-A3RC-01 1 1235580 1235580 G A ACAP3 Silent p.I175I 0.46 TCGA-GC-A3RC-01 1 12401928 12401928 C T VPS13D Silent p.T2906T 0.21 TCGA-GC-A3RC-01 1 1267925 1267925 G A TAS1R3 Silent p.V338V 0.21 TCGA-GC-A3RC-01 1 1268955 1268955 G A TAS1R3 Missense_Mutation p.R557H 0.26 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RC-01 1 142713401 142713401 A G RP11-417J8.6 RNA 0.44 TCGA-GC-A3RC-01 1 150307445 150307445 G T PRPF3 Silent p.L256L 0.58 TCGA-GC-A3RC-01 1 150471769 150471769 G T TARS2 Missense_Mutation p.K539N 0.37 deleterious(0) probably_damaging(0.918) TCGA-GC-A3RC-01 1 155206116 155206116 C A GBA Missense_Mutation p.V382L 0.09 tolerated(0.33) benign(0.002) TCGA-GC-A3RC-01 1 16265886 16265886 C T SPEN Silent p.I3653I 0.30 TCGA-GC-A3RC-01 1 1689971 1689971 C T NADK Intron 0.45 TCGA-GC-A3RC-01 1 175334312 175334312 G A TNR Silent p.N807N 0.27 TCGA-GC-A3RC-01 1 176659286 176659286 C T PAPPA2 Silent p.L717L 0.28 TCGA-GC-A3RC-01 1 181745299 181745299 C T CACNA1E Silent p.S1734S 0.05 TCGA-GC-A3RC-01 1 182572448 182572448 C A RGS16 Missense_Mutation p.G24V 0.42 deleterious(0.04) probably_damaging(0.937) TCGA-GC-A3RC-01 1 185269206 185269206 G A IVNS1ABP Nonsense_Mutation p.Q476* 0.37 TCGA-GC-A3RC-01 1 186057737 186057737 G C HMCN1 Splice_Site p.X3193_splice 0.38 TCGA-GC-A3RC-01 1 186283013 186283013 T G TPR 3'UTR 0.42 TCGA-GC-A3RC-01 1 19439182 19439182 G A UBR4 Silent p.V3879V 0.28 TCGA-GC-A3RC-01 1 197072405 197072405 G C ASPM Missense_Mutation p.I1992M 0.25 tolerated(0.11) benign(0.005) TCGA-GC-A3RC-01 1 19992501 19992501 G A HTR6 Silent p.L85L 0.18 TCGA-GC-A3RC-01 1 200613319 200613319 T C DDX59 3'UTR 0.36 TCGA-GC-A3RC-01 1 201437720 201437728 CTCCACGCA - PHLDA3 In_Frame_Del p.C63_E65del 0.16 TCGA-GC-A3RC-01 1 201984414 201984414 G T ELF3 Missense_Mutation p.G360V 0.17 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 1 207013293 207013294 - ATC IL19 In_Frame_Ins p.I142dup 0.39 TCGA-GC-A3RC-01 1 207644106 207644106 T C CR2 Missense_Mutation p.I416T 0.28 deleterious(0) probably_damaging(0.978) TCGA-GC-A3RC-01 1 211751728 211751728 C T SLC30A1 Missense_Mutation p.R76Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-GC-A3RC-01 1 21940120 21940120 C A RAP1GAP Splice_Site p.X222_splice 0.43 TCGA-GC-A3RC-01 1 220825429 220825429 C G MARK1 Missense_Mutation p.S558C 0.35 deleterious(0.01) possibly_damaging(0.784) TCGA-GC-A3RC-01 1 242052811 242052811 T G EXO1 Missense_Mutation p.V817G 0.24 deleterious(0) possibly_damaging(0.888) TCGA-GC-A3RC-01 1 246927628 246927628 T C SCCPDH Silent p.N357N 0.47 TCGA-GC-A3RC-01 1 26135144 26135144 G A SEPN1 Missense_Mutation p.R204H 0.28 tolerated(0.1) possibly_damaging(0.655) TCGA-GC-A3RC-01 1 27059194 27059194 C T ARID1A Nonsense_Mutation p.Q611* 0.21 TCGA-GC-A3RC-01 1 27948152 27948152 C T FGR Missense_Mutation p.E116K 0.24 tolerated(0.39) possibly_damaging(0.612) TCGA-GC-A3RC-01 1 29585795 29585795 C G PTPRU Missense_Mutation p.S167C 0.14 deleterious(0.04) benign(0.018) TCGA-GC-A3RC-01 1 32257898 32257898 A T SPOCD1 Silent p.S960S 0.40 TCGA-GC-A3RC-01 1 33134689 33134689 T C RBBP4 Silent p.H239H 0.42 TCGA-GC-A3RC-01 1 35227557 35227557 C T GJB4 Silent p.C234C 0.36 TCGA-GC-A3RC-01 1 36754808 36754808 A C THRAP3 Missense_Mutation p.K396N 0.28 deleterious(0.01) benign(0.295) TCGA-GC-A3RC-01 1 3697705 3697705 G A LRRC47 Missense_Mutation p.P567S 0.29 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 1 44435913 44435913 G A DPH2 Silent p.L22L 0.50 TCGA-GC-A3RC-01 1 54417905 54417905 G T LRRC42 Missense_Mutation p.R78L 0.22 deleterious(0.04) benign(0.441) TCGA-GC-A3RC-01 1 55074676 55074676 C T ACOT11 Intron 0.23 TCGA-GC-A3RC-01 1 55452006 55452006 C A TMEM61 Silent p.G84G 0.21 TCGA-GC-A3RC-01 1 62939693 62939693 G C DOCK7 Missense_Mutation p.H2027D 0.33 deleterious(0) possibly_damaging(0.599) TCGA-GC-A3RC-01 1 74737353 74737353 C T FPGT-TNNI3K Silent p.L249L 0.41 TCGA-GC-A3RC-01 1 84670318 84670318 G A PRKACB Intron 0.26 TCGA-GC-A3RC-01 1 85592370 85592370 C G WDR63 Missense_Mutation p.I763M 0.38 deleterious(0) probably_damaging(0.989) TCGA-GC-A3RC-01 1 9305294 9305294 C T H6PD Nonsense_Mutation p.Q101* 0.56 TCGA-GC-A3RC-01 1 99387566 99387566 G A LPPR5 Missense_Mutation p.P224S 0.26 deleterious(0.03) probably_damaging(1) TCGA-GC-A3RC-01 20 17600979 17600979 C T RRBP1 Missense_Mutation p.E749K 0.38 deleterious(0.01) possibly_damaging(0.486) TCGA-GC-A3RC-01 20 17602568 17602568 G C RRBP1 Missense_Mutation p.L625V 0.22 tolerated(0.42) possibly_damaging(0.567) TCGA-GC-A3RC-01 20 23472362 23472362 G A CST8 Missense_Mutation p.A20T 0.34 tolerated(0.26) benign(0.014) TCGA-GC-A3RC-01 20 30432338 30432338 G A FOXS1 3'UTR 0.62 TCGA-GC-A3RC-01 20 33147580 33147580 C A MAP1LC3A Missense_Mutation p.L86M 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-GC-A3RC-01 20 33507279 33507279 C T ACSS2 Silent p.L305L 0.26 TCGA-GC-A3RC-01 20 3655249 3655249 G A ADAM33 Missense_Mutation p.R168W 0.17 tolerated(0.06) benign(0.006) TCGA-GC-A3RC-01 20 36937359 36937359 C T BPI Silent p.P95P 0.32 TCGA-GC-A3RC-01 20 37353467 37353467 C T SLC32A1 Nonsense_Mutation p.Q34* 0.47 TCGA-GC-A3RC-01 20 40044106 40044106 G C CHD6 Missense_Mutation p.S2220C 0.34 deleterious(0) probably_damaging(0.928) TCGA-GC-A3RC-01 20 4168011 4168011 G A SMOX Missense_Mutation p.R542H 0.37 deleterious(0.05) benign(0.303) TCGA-GC-A3RC-01 20 44430092 44430092 A G DNTTIP1 Missense_Mutation p.K165E 0.15 deleterious(0.01) possibly_damaging(0.894) TCGA-GC-A3RC-01 20 49510909 49510909 G A ADNP Silent p.F114F 0.27 TCGA-GC-A3RC-01 20 5098271 5098271 C T PCNA Missense_Mutation p.E143K 0.21 deleterious(0.02) possibly_damaging(0.726) TCGA-GC-A3RC-01 20 52645077 52645077 A T BCAS1 Missense_Mutation p.F193I 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-GC-A3RC-01 20 55206484 55206484 A G TFAP2C Missense_Mutation p.H91R 0.27 deleterious(0.01) benign(0.068) TCGA-GC-A3RC-01 20 60706476 60706476 C T LSM14B Silent p.P300P 0.44 TCGA-GC-A3RC-01 20 76978 76978 G A DEFB125 Missense_Mutation p.E131K 0.15 tolerated(1) benign(0) TCGA-GC-A3RC-01 21 30547240 30547240 G A MAP3K7CL 3'UTR 0.24 TCGA-GC-A3RC-01 21 32525013 32525013 C A TIAM1 Nonsense_Mutation p.E1103* 0.29 TCGA-GC-A3RC-01 21 37741384 37741384 A G MORC3 Missense_Mutation p.D573G 0.48 deleterious(0.01) probably_damaging(0.979) TCGA-GC-A3RC-01 21 38139583 38139583 C T HLCS Silent p.L485L 0.19 TCGA-GC-A3RC-01 21 38593563 38593563 T C DSCR3 3'Flank 0.52 TCGA-GC-A3RC-01 21 40715063 40715063 C T HMGN1 Missense_Mutation p.G93E 0.16 tolerated(0.26) benign(0.273) TCGA-GC-A3RC-01 21 43916272 43916272 A G RSPH1 Silent p.L9L 0.28 TCGA-GC-A3RC-01 21 47953951 47953951 G A DIP2A Silent p.G488G 0.19 TCGA-GC-A3RC-01 22 19222205 19222205 C T CLTCL1 Missense_Mutation p.D332N 0.62 tolerated(0.53) benign(0.201) TCGA-GC-A3RC-01 22 19222208 19222208 C T CLTCL1 Missense_Mutation p.E331K 0.62 tolerated(0.09) benign(0.21) TCGA-GC-A3RC-01 22 20970565 20970565 G A SMPD4P1 Intron 0.78 TCGA-GC-A3RC-01 22 21351029 21351029 G T LZTR1 Missense_Mutation p.R755L 0.67 deleterious(0) probably_damaging(0.985) TCGA-GC-A3RC-01 22 24582315 24582315 G T SUSD2 Missense_Mutation p.G525V 0.20 tolerated(0.3) benign(0.219) TCGA-GC-A3RC-01 22 30394794 30394794 G C MTMR3 Missense_Mutation p.G169R 0.24 deleterious(0.04) probably_damaging(1) TCGA-GC-A3RC-01 22 31003284 31003284 G A TCN2 5'UTR 0.57 TCGA-GC-A3RC-01 22 32230088 32230088 G A DEPDC5 Intron 0.62 TCGA-GC-A3RC-01 22 36745173 36745173 C G MYH9 Missense_Mutation p.D37H 0.41 possibly_damaging(0.676) TCGA-GC-A3RC-01 22 37904564 37904564 C T CARD10 Silent p.E345E 0.50 TCGA-GC-A3RC-01 22 38245565 38245565 G A EIF3L Intron 0.65 TCGA-GC-A3RC-01 22 38374040 38374040 C - SOX10 Frame_Shift_Del p.R178Gfs*108 0.30 TCGA-GC-A3RC-01 22 40415995 40415995 G A FAM83F Silent p.V254V 0.66 TCGA-GC-A3RC-01 22 41913629 41913629 C G ACO2 Missense_Mutation p.R312G 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-GC-A3RC-01 22 42952596 42952596 T A SERHL2 Splice_Site p.X141_splice 0.32 TCGA-GC-A3RC-01 2 110935915 110935915 C T NPHP1 Intron 0.50 TCGA-GC-A3RC-01 2 113258822 113258822 T C TTL Missense_Mutation p.L170P 0.28 deleterious(0.02) probably_damaging(0.938) TCGA-GC-A3RC-01 2 11772057 11772057 C T GREB1 Missense_Mutation p.P1545L 0.34 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 2 120221747 120221747 G A SCTR Silent p.D196D 0.21 TCGA-GC-A3RC-01 2 128185988 128185988 G A PROC Silent p.E284E 0.47 TCGA-GC-A3RC-01 2 128324290 128324290 C T MYO7B Nonsense_Mutation p.Q120* 0.19 TCGA-GC-A3RC-01 2 128399647 128399647 G A LIMS2 Silent p.L237L 0.20 TCGA-GC-A3RC-01 2 128699689 128699689 C G SAP130 Missense_Mutation p.R1048T 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GC-A3RC-01 2 135922214 135922214 G A RAB3GAP1 Missense_Mutation p.G886E 0.30 deleterious(0.01) possibly_damaging(0.852) TCGA-GC-A3RC-01 2 150061768 150061768 T C LYPD6B Missense_Mutation p.Y27H 0.54 benign(0) TCGA-GC-A3RC-01 2 170151164 170151164 G C LRP2 Missense_Mutation p.Q162E 0.48 benign(0.076) TCGA-GC-A3RC-01 2 175304649 175304649 G A GPR155 Silent p.I763I 0.18 TCGA-GC-A3RC-01 2 179587113 179587113 A G TTN Silent p.T7467T 0.59 TCGA-GC-A3RC-01 2 20405117 20405117 G T SDC1 Silent p.S45S 0.66 TCGA-GC-A3RC-01 2 204732615 204732615 G A CTLA4 5'UTR 0.22 TCGA-GC-A3RC-01 2 209142384 209142384 A T PIKFYVE Missense_Mutation p.S189C 0.22 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 2 218712961 218712961 C T TNS1 Missense_Mutation p.R635Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-GC-A3RC-01 2 220434968 220434968 G A OBSL1 Silent p.L329L 0.47 TCGA-GC-A3RC-01 2 231407708 231407708 A T SP100 3'UTR 0.28 TCGA-GC-A3RC-01 2 234198934 234198934 T C ATG16L1 Silent p.I455I 0.35 TCGA-GC-A3RC-01 2 234545483 234545483 A C UGT1A10 Silent p.I105I 0.20 TCGA-GC-A3RC-01 2 61149024 61149024 C T REL Missense_Mutation p.A405V 0.28 tolerated(0.31) benign(0) TCGA-GC-A3RC-01 2 64779951 64779951 T C AFTPH Missense_Mutation p.F448S 0.22 deleterious(0.03) benign(0.326) TCGA-GC-A3RC-01 2 75929281 75929281 C T GCFC2 Intron 0.26 TCGA-GC-A3RC-01 2 85581722 85581722 C G RETSAT 5'UTR 0.48 TCGA-GC-A3RC-01 2 86090551 86090551 A G ST3GAL5 Missense_Mutation p.L47P 0.21 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-GC-A3RC-01 2 9634911 9634911 A G ADAM17 Intron 0.75 TCGA-GC-A3RC-01 2 9728302 9728302 C T YWHAQ Missense_Mutation p.A192T 0.60 deleterious_low_confidence(0.02) possibly_damaging(0.786) TCGA-GC-A3RC-01 2 98779342 98779342 C T VWA3B Silent p.L339L 0.61 TCGA-GC-A3RC-01 3 10106445 10106445 G C FANCD2 Missense_Mutation p.G685A 0.22 deleterious(0.02) benign(0.044) TCGA-GC-A3RC-01 3 10107147 10107147 C A FANCD2 Missense_Mutation p.N746K 0.20 tolerated(0.17) benign(0.106) TCGA-GC-A3RC-01 3 10400558 10400558 G A ATP2B2 Silent p.R651R 0.24 TCGA-GC-A3RC-01 3 113847578 113847578 C G DRD3 Missense_Mutation p.K396N 0.35 deleterious(0.02) probably_damaging(0.984) TCGA-GC-A3RC-01 3 122003997 122003997 G C CASR Missense_Mutation p.G1076R 0.30 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-GC-A3RC-01 3 132169586 132169586 C G DNAJC13 Silent p.T144T 0.39 TCGA-GC-A3RC-01 3 13916528 13916528 C T WNT7A Missense_Mutation p.E72K 0.33 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RC-01 3 160137191 160137191 A G SMC4 Missense_Mutation p.K573E 0.29 tolerated(0.2) benign(0.004) TCGA-GC-A3RC-01 3 185638917 185638917 G A TRA2B Missense_Mutation p.R233W 0.59 deleterious(0) possibly_damaging(0.876) TCGA-GC-A3RC-01 3 194344402 194344402 C G TMEM44 Missense_Mutation p.K127N 0.20 deleterious(0.01) possibly_damaging(0.888) TCGA-GC-A3RC-01 3 195517279 195517279 G A MUC4 Missense_Mutation p.S391L 0.54 unknown(0) TCGA-GC-A3RC-01 3 25639947 25639947 C T TOP2B Missense_Mutation p.D1573N 0.56 deleterious_low_confidence(0.05) benign(0.208) TCGA-GC-A3RC-01 3 28562512 28562512 G A ZCWPW2 Missense_Mutation p.E272K 0.17 deleterious(0.01) possibly_damaging(0.907) TCGA-GC-A3RC-01 3 4730215 4730215 G A ITPR1 Missense_Mutation p.A1232T 0.21 tolerated(0.38) probably_damaging(0.999) TCGA-GC-A3RC-01 3 49053759 49053759 C G DALRD3 Silent p.L387L 0.10 TCGA-GC-A3RC-01 3 52598157 52598157 T C PBRM1 Missense_Mutation p.N1237D 0.55 tolerated(0.69) possibly_damaging(0.486) TCGA-GC-A3RC-01 3 53346282 53346282 C T DCP1A Missense_Mutation p.E167K 0.43 deleterious(0) possibly_damaging(0.906) TCGA-GC-A3RC-01 3 56598036 56598036 G A CCDC66 Missense_Mutation p.E143K 0.45 tolerated(0.11) benign(0.056) TCGA-GC-A3RC-01 3 57542432 57542432 C T PDE12 Missense_Mutation p.S109L 0.61 tolerated(0.3) benign(0.005) TCGA-GC-A3RC-01 3 58368279 58368279 G C PXK Missense_Mutation p.L80F 0.12 deleterious(0) possibly_damaging(0.566) TCGA-GC-A3RC-01 3 72957678 72957678 G A GXYLT2 Missense_Mutation p.E146K 0.52 deleterious(0) probably_damaging(0.997) TCGA-GC-A3RC-01 3 88040157 88040157 A G HTR1F Silent p.R86R 0.06 TCGA-GC-A3RC-01 3 8809375 8809375 C T OXTR Missense_Mutation p.A167T 0.62 deleterious(0) benign(0.438) TCGA-GC-A3RC-01 3 9785587 9785587 T C BRPF1 Splice_Site p.X879_splice 0.42 TCGA-GC-A3RC-01 3 97887646 97887646 T G OR5H15 Missense_Mutation p.Y35D 0.47 deleterious(0) probably_damaging(0.972) TCGA-GC-A3RC-01 3 9798628 9798628 C G OGG1 Intron 0.35 TCGA-GC-A3RC-01 3 9976525 9976525 G C CRELD1 Missense_Mutation p.E61Q 0.26 deleterious(0.04) probably_damaging(0.982) TCGA-GC-A3RC-01 4 102946407 102946407 G A BANK1 Silent p.Q445Q 0.27 TCGA-GC-A3RC-01 4 108641388 108641390 GAG - PAPSS1 5'UTR 0.59 TCGA-GC-A3RC-01 4 119678896 119678896 G T SEC24D Silent p.T467T 0.57 TCGA-GC-A3RC-01 4 134071531 134071531 T C PCDH10 Missense_Mutation p.I79T 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-GC-A3RC-01 4 146071800 146071800 G C OTUD4 Nonsense_Mutation p.S310* 0.18 TCGA-GC-A3RC-01 4 154216911 154216911 C T TRIM2 Silent p.N411N 0.36 TCGA-GC-A3RC-01 4 155156345 155156345 C G DCHS2 Silent p.V2698V 0.35 TCGA-GC-A3RC-01 4 156850779 156850779 T C CTSO Silent p.Q251Q 0.25 TCGA-GC-A3RC-01 4 16164972 16164972 C G TAPT1 Missense_Mutation p.E555Q 0.22 deleterious(0.01) possibly_damaging(0.848) TCGA-GC-A3RC-01 4 16175863 16175863 C G TAPT1 Silent p.R400R 0.56 TCGA-GC-A3RC-01 4 1739043 1739043 A G TACC3 Silent p.A608A 0.22 TCGA-GC-A3RC-01 4 2273431 2273439 GCCAGTTCA - ZFYVE28 In_Frame_Del p.E798_A800del 0.28 TCGA-GC-A3RC-01 4 25384988 25384988 A G ANAPC4 Missense_Mutation p.H114R 0.24 tolerated(0.21) benign(0.081) TCGA-GC-A3RC-01 4 3182340 3182340 G T HTT Missense_Mutation p.V1571L 0.49 benign(0.424) TCGA-GC-A3RC-01 4 39448239 39448239 G A KLB Silent p.L631L 0.24 TCGA-GC-A3RC-01 4 40123217 40123217 T C N4BP2 Silent p.I1162I 0.28 TCGA-GC-A3RC-01 4 4301680 4301680 C T ZBTB49 Missense_Mutation p.P3L 0.42 deleterious(0.02) benign(0.15) TCGA-GC-A3RC-01 4 55604812 55604812 C T KIT 3'UTR 0.40 TCGA-GC-A3RC-01 4 69182123 69182123 T C YTHDC1 Missense_Mutation p.Y623C 0.48 deleterious(0.01) possibly_damaging(0.891) TCGA-GC-A3RC-01 4 6969151 6969151 G A TBC1D14 Silent p.K281K 0.28 TCGA-GC-A3RC-01 4 74124115 74124115 C G ANKRD17 Missense_Mutation p.D91H 0.29 probably_damaging(0.92) TCGA-GC-A3RC-01 4 77670237 77670237 G A SHROOM3 Missense_Mutation p.G1274E 0.52 deleterious(0.03) possibly_damaging(0.848) TCGA-GC-A3RC-01 4 87671723 87671723 C T PTPN13 Silent p.L917L 0.24 TCGA-GC-A3RC-01 5 111601977 111601977 G A EPB41L4A Missense_Mutation p.P129L 0.45 tolerated(0.13) probably_damaging(0.942) TCGA-GC-A3RC-01 5 112228423 112228423 G A ZRSR1 Missense_Mutation p.G363S 0.27 tolerated(0.2) benign(0.074) TCGA-GC-A3RC-01 5 131530659 131530659 T A P4HA2 Silent p.T499T 0.29 TCGA-GC-A3RC-01 5 132216839 132216840 - T AFF4 Frame_Shift_Ins p.I1135Nfs*3 0.21 TCGA-GC-A3RC-01 5 134696389 134696389 G A H2AFY Intron 0.40 TCGA-GC-A3RC-01 5 137750823 137750823 A G KDM3B Missense_Mutation p.T1068A 0.23 tolerated(0.84) benign(0.001) TCGA-GC-A3RC-01 5 13841840 13841848 ACCTGTTTC - DNAH5 In_Frame_Del p.E1813_G1815del 0.25 TCGA-GC-A3RC-01 5 139938054 139938054 C G APBB3 3'UTR 0.26 TCGA-GC-A3RC-01 5 140553173 140553173 G A PCDHB7 Missense_Mutation p.E253K 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-GC-A3RC-01 5 140720625 140720625 C T PCDHGA2 Missense_Mutation p.A696V 0.04 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-GC-A3RC-01 5 140865328 140865328 G - PCDHGC4 Frame_Shift_Del p.E197Rfs*16 0.13 TCGA-GC-A3RC-01 5 149588987 149588987 C T SLC6A7 Missense_Mutation p.R574W 0.25 deleterious(0) probably_damaging(0.982) TCGA-GC-A3RC-01 5 150483166 150483166 C T ANXA6 Missense_Mutation p.E643K 0.30 tolerated(1) benign(0.437) TCGA-GC-A3RC-01 5 158223455 158223455 C T EBF1 Silent p.P269P 0.82 TCGA-GC-A3RC-01 5 176831360 176831360 C T F12 Silent p.L285L 0.83 TCGA-GC-A3RC-01 5 32355736 32355736 G T ZFR 3'UTR 0.14 TCGA-GC-A3RC-01 5 37379640 37379640 G A WDR70 Missense_Mutation p.M25I 0.42 deleterious(0.01) possibly_damaging(0.835) TCGA-GC-A3RC-01 5 65474672 65474672 C G SREK1 Silent p.L617L 0.29 TCGA-GC-A3RC-01 5 70818196 70818196 G A BDP1 Missense_Mutation p.R1691K 0.55 tolerated(0.08) probably_damaging(0.987) TCGA-GC-A3RC-01 5 7707855 7707855 G C ADCY2 Missense_Mutation p.L435F 0.60 deleterious(0) probably_damaging(0.99) TCGA-GC-A3RC-01 5 9119187 9119187 C T SEMA5A Silent p.Q616Q 0.33 TCGA-GC-A3RC-01 6 101037582 101037582 A T ASCC3 Missense_Mutation p.H1826Q 0.72 deleterious(0) probably_damaging(0.997) TCGA-GC-A3RC-01 6 107390828 107390828 C T BEND3 Missense_Mutation p.G523S 0.75 tolerated(0.25) probably_damaging(0.999) TCGA-GC-A3RC-01 6 111714085 111714085 A G REV3L Missense_Mutation p.I219T 0.72 deleterious(0) possibly_damaging(0.859) TCGA-GC-A3RC-01 6 126236524 126236524 C G NCOA7 Silent p.V714V 0.74 TCGA-GC-A3RC-01 6 159052852 159052852 G A TMEM181 Missense_Mutation p.E591K 0.60 deleterious(0) probably_damaging(0.997) TCGA-GC-A3RC-01 6 159657323 159657323 C G FNDC1 Missense_Mutation p.I1348M 0.42 deleterious(0) unknown(0) TCGA-GC-A3RC-01 6 25967107 25967107 A G TRIM38 Silent p.P119P 0.13 TCGA-GC-A3RC-01 6 26189297 26189297 C G HIST1H4D Missense_Mutation p.G3A 0.68 deleterious_low_confidence(0.01) unknown(0) TCGA-GC-A3RC-01 6 28265744 28265744 G A PGBD1 Missense_Mutation p.G282E 0.10 tolerated_low_confidence(0.52) benign(0.016) TCGA-GC-A3RC-01 6 30673833 30673833 G A MDC1 Missense_Mutation p.P1043S 0.55 deleterious(0.01) benign(0.162) TCGA-GC-A3RC-01 6 33246314 33246314 T A B3GALT4 Missense_Mutation p.I373K 0.13 deleterious(0.05) benign(0.004) TCGA-GC-A3RC-01 6 33636829 33636829 G T ITPR3 Silent p.T695T 0.19 TCGA-GC-A3RC-01 6 34791100 34791100 C A UHRF1BP1 Missense_Mutation p.P105T 0.18 deleterious(0) probably_damaging(0.996) TCGA-GC-A3RC-01 6 36287297 36287297 C G C6orf222 Missense_Mutation p.A587P 0.76 deleterious(0.03) benign(0.001) TCGA-GC-A3RC-01 6 36492140 36492140 A G STK38 Missense_Mutation p.I95T 0.79 deleterious(0) probably_damaging(0.977) TCGA-GC-A3RC-01 6 37280749 37280749 C T TBC1D22B Silent p.S346S 0.82 TCGA-GC-A3RC-01 6 47512341 47512341 G A CD2AP Splice_Site p.X107_splice 0.16 TCGA-GC-A3RC-01 6 47682609 47682609 A G GPR115 Missense_Mutation p.Y543C 0.63 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 6 74104758 74104758 A G DDX43 Missense_Mutation p.S44G 0.74 tolerated(0.19) benign(0) TCGA-GC-A3RC-01 6 7565681 7565681 C T DSP Silent p.C289C 0.05 TCGA-GC-A3RC-01 6 79577521 79577521 C T IRAK1BP1 Silent p.S76S 0.76 TCGA-GC-A3RC-01 6 90660532 90660532 C T BACH2 Silent p.V431V 0.80 TCGA-GC-A3RC-01 7 105752637 105752637 G A SYPL1 Silent p.I24I 0.46 TCGA-GC-A3RC-01 7 107194757 107194757 G C COG5 Missense_Mutation p.Q120E 0.42 tolerated(0.06) possibly_damaging(0.828) TCGA-GC-A3RC-01 7 128630177 128630177 C T TNPO3 Intron 0.33 TCGA-GC-A3RC-01 7 142111593 142111593 T C TRBV5-7 Missense_Mutation p.H48R 0.39 deleterious(0) probably_damaging(0.989) TCGA-GC-A3RC-01 7 150390132 150390133 - CACAC GIMAP2 Frame_Shift_Ins p.A255Pfs*10 0.20 TCGA-GC-A3RC-01 7 1517411 1517412 - C INTS1 Frame_Shift_Ins p.K1598Efs*177 0.33 TCGA-GC-A3RC-01 7 152139991 152139991 A G AC005631.1 3'Flank 0.46 TCGA-GC-A3RC-01 7 154684818 154684818 G A DPP6 3'UTR 0.29 TCGA-GC-A3RC-01 7 156979626 156979626 G T UBE3C Missense_Mutation p.R414S 0.08 tolerated(0.19) benign(0.082) TCGA-GC-A3RC-01 7 16415851 16415851 G A ISPD Nonsense_Mutation p.R184* 0.15 TCGA-GC-A3RC-01 7 26225326 26225326 G A NFE2L3 Missense_Mutation p.G670R 0.39 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RC-01 7 26240349 26240354 CCCGGC - HNRNPA2B1 5'UTR 0.38 TCGA-GC-A3RC-01 7 54617616 54617616 G T VSTM2A Silent p.V129V 0.18 TCGA-GC-A3RC-01 7 5529800 5529800 A T FBXL18 Intron 0.40 TCGA-GC-A3RC-01 7 5662370 5662370 C T RNF216 3'UTR 0.39 TCGA-GC-A3RC-01 7 64838826 64838826 A G ZNF92 5'UTR 0.48 TCGA-GC-A3RC-01 7 8198209 8198209 A T ICA1 Missense_Mutation p.L218H 0.41 deleterious(0) probably_damaging(1) TCGA-GC-A3RC-01 7 91712680 91712680 T G AKAP9 Missense_Mutation p.L2786R 0.40 possibly_damaging(0.724) TCGA-GC-A3RC-01 7 92118691 92118691 G A PEX1 Missense_Mutation p.A1228V 0.39 tolerated(1) benign(0.003) TCGA-GC-A3RC-01 7 98495469 98495469 G C TRRAP Missense_Mutation p.E205Q 0.16 benign(0.01) TCGA-GC-A3RC-01 8 104897639 104897639 C G RIMS2 Nonsense_Mutation p.S271* 0.27 TCGA-GC-A3RC-01 8 131896844 131896844 G A ADCY8 Missense_Mutation p.S692L 0.39 deleterious(0.02) possibly_damaging(0.675) TCGA-GC-A3RC-01 8 144992514 144992514 C G PLEC Missense_Mutation p.Q3962H 0.38 probably_damaging(0.996) TCGA-GC-A3RC-01 8 145152190 145152190 A G CYC1 Missense_Mutation p.K310R 0.43 tolerated(0.24) benign(0.034) TCGA-GC-A3RC-01 8 22355531 22355531 G T PPP3CC Missense_Mutation p.W130C 0.38 deleterious(0) probably_damaging(0.995) TCGA-GC-A3RC-01 8 38279401 38279401 G A FGFR1 Missense_Mutation p.S363F 0.20 deleterious(0) possibly_damaging(0.828) TCGA-GC-A3RC-01 8 48771464 48771464 C T PRKDC Silent p.L2096L 0.04 TCGA-GC-A3RC-01 8 61749497 61749497 T G CHD7 Missense_Mutation p.L1371V 0.26 probably_damaging(0.996) TCGA-GC-A3RC-01 8 8998903 8998903 C G PPP1R3B Missense_Mutation p.D87H 0.35 deleterious(0) possibly_damaging(0.907) TCGA-GC-A3RC-01 8 97244136 97244136 C T UQCRB Missense_Mutation p.E42K 0.47 tolerated(0.1) benign(0.374) TCGA-GC-A3RC-01 8 97247800 97247800 G C UQCRB 5'Flank 0.20 TCGA-GC-A3RC-01 9 100862212 100862212 C T TRIM14 Splice_Site p.X179_splice 0.56 TCGA-GC-A3RC-01 9 107367139 107367139 A G OR13C2 Missense_Mutation p.F257S 0.27 tolerated(0.18) benign(0.02) TCGA-GC-A3RC-01 9 113171084 113171084 T C SVEP1 Missense_Mutation p.K2266E 0.23 benign(0.12) TCGA-GC-A3RC-01 9 114246813 114246813 G T KIAA0368 Missense_Mutation p.Q34K 0.25 deleterious_low_confidence(0) unknown(0) TCGA-GC-A3RC-01 9 123163060 123163060 G A CDK5RAP2 Missense_Mutation p.S1804L 0.47 deleterious(0) possibly_damaging(0.879) TCGA-GC-A3RC-01 9 125613386 125613386 C G RC3H2 Missense_Mutation p.Q1118H 0.24 tolerated_low_confidence(0.06) possibly_damaging(0.68) TCGA-GC-A3RC-01 9 13109990 13109990 G C MPDZ Missense_Mutation p.T1939S 0.32 tolerated(0.52) benign(0.008) TCGA-GC-A3RC-01 9 131568173 131568173 C T TBC1D13 Silent p.F318F 0.57 TCGA-GC-A3RC-01 9 131568242 131568242 C G TBC1D13 Silent p.L341L 0.35 TCGA-GC-A3RC-01 9 131670865 131670865 G A LRRC8A Silent p.L474L 0.15 TCGA-GC-A3RC-01 9 133370345 133370345 C G ASS1 Silent p.L354L 0.27 TCGA-GC-A3RC-01 9 133738201 133738201 C T ABL1 Missense_Mutation p.H220Y 0.31 tolerated(0.09) probably_damaging(0.998) TCGA-GC-A3RC-01 9 134308042 134308042 G A PRRC2B Missense_Mutation p.A52T 0.23 deleterious(0) possibly_damaging(0.861) TCGA-GC-A3RC-01 9 136253248 136253248 C T C9orf96 Silent p.L104L 0.49 TCGA-GC-A3RC-01 9 136599158 136599158 C T SARDH Silent p.L46L 0.26 TCGA-GC-A3RC-01 9 137711985 137711985 C A COL5A1 Silent p.L1490L 0.27 TCGA-GC-A3RC-01 9 14307393 14307393 C T NFIB Missense_Mutation p.E53K 0.10 deleterious(0) probably_damaging(0.952) TCGA-GC-A3RC-01 9 34997058 34997058 C A DNAJB5 Silent p.I397I 0.17 TCGA-GC-A3RC-01 9 35661832 35661832 G C ARHGEF39 3'UTR 0.56 TCGA-GC-A3RC-01 9 6014801 6014801 C T RANBP6 Silent p.L269L 0.38 TCGA-GC-A3RC-01 9 676911 676911 G C KANK1 5'UTR 0.13 TCGA-GC-A3RC-01 9 6893118 6893118 C T KDM4C Silent p.F269F 0.45 TCGA-GC-A3RC-01 9 74526714 74526714 T A C9orf85 Missense_Mutation p.F22I 0.17 deleterious(0) probably_damaging(0.951) TCGA-GC-A3RC-01 9 75533668 75533668 T G ALDH1A1 Missense_Mutation p.K273T 0.34 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RC-01 9 8460538 8460538 C T PTPRD Missense_Mutation p.V1250M 0.35 tolerated(0.09) probably_damaging(0.995) TCGA-GC-A3RC-01 9 86395319 86395319 T C GKAP1 Missense_Mutation p.D188G 0.22 tolerated(0.05) benign(0.137) TCGA-GC-A3RC-01 9 88967636 88967636 G C ZCCHC6 Missense_Mutation p.T160R 0.29 deleterious_low_confidence(0.04) benign(0.008) TCGA-GC-A3RC-01 9 91963047 91963047 G A SECISBP2 Silent p.V552V 0.19 TCGA-GC-A3RC-01 9 97887396 97887396 A C FANCC Missense_Mutation p.V323G 0.10 deleterious(0) benign(0.36) TCGA-GC-A3RC-01 X 101911854 101911854 T C GPRASP1 Missense_Mutation p.W1005R 0.82 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RC-01 X 110489911 110489911 T C CAPN6 Missense_Mutation p.D607G 0.86 tolerated(0.23) benign(0.006) TCGA-GC-A3RC-01 X 150912796 150912796 C T CNGA2 Silent p.N607N 0.73 TCGA-GC-A3RC-01 X 1719917 1719917 C A AKAP17A Missense_Mutation p.D506E 0.21 tolerated_low_confidence(0.59) unknown(0) TCGA-GC-A3RC-01 X 24006301 24006301 C T KLHL15 Missense_Mutation p.E518K 0.80 tolerated(0.5) benign(0.108) TCGA-GC-A3RC-01 X 24084129 24084129 G C EIF2S3 Missense_Mutation p.D263H 0.33 deleterious(0) probably_damaging(0.986) TCGA-GC-A3RC-01 X 30873457 30873457 G A TAB3 Missense_Mutation p.P109S 0.86 tolerated(0.11) probably_damaging(0.997) TCGA-GC-A3RC-01 X 32382783 32382783 G T DMD Missense_Mutation p.H1690Q 0.81 benign(0) TCGA-GC-A3RC-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.70 TCGA-GC-A3RC-01 X 49022416 49022416 C T MAGIX Missense_Mutation p.P228L 0.74 tolerated(0.78) benign(0.002) TCGA-GC-A3RC-01 X 54143101 54143101 T A FAM120C Missense_Mutation p.K730I 0.73 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RC-01 X 62926191 62926191 C T ARHGEF9 Missense_Mutation p.E110K 0.44 deleterious(0.02) probably_damaging(1) TCGA-GC-A3RC-01 X 7811787 7811787 G A VCX Silent p.E117E 0.63 TCGA-GC-A3RC-01 X 78216656 78216656 C T P2RY10 Silent p.I213I 0.40 TCGA-GC-A3RC-01 X 84560911 84560911 A G POF1B Silent p.S441S 0.78 TCGA-GC-A3RC-01 X 8538598 8538598 A G KAL1 Missense_Mutation p.M335T 0.79 tolerated(1) benign(0) TCGA-GC-A3RC-01 Y 16835002 16835002 C T NLGN4Y Missense_Mutation p.H160Y 0.11 tolerated(0.26) benign(0.176) TCGA-GC-A3RD-01 10 25314303 25314303 G C THNSL1 Missense_Mutation p.K717N 0.17 tolerated(0.41) benign(0.002) TCGA-GC-A3RD-01 10 64415128 64415128 C T ZNF365 Intron 0.30 TCGA-GC-A3RD-01 10 73587834 73587834 G A PSAP Silent p.V219V 0.09 TCGA-GC-A3RD-01 10 98136543 98136543 C T TLL2 Missense_Mutation p.G785E 0.68 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RD-01 11 105795422 105795422 G T GRIA4 Nonsense_Mutation p.E592* 0.38 TCGA-GC-A3RD-01 11 110035202 110035202 G A ZC3H12C Silent p.L464L 0.11 TCGA-GC-A3RD-01 11 17436131 17436131 G A ABCC8 Missense_Mutation p.S773L 0.40 deleterious(0.01) possibly_damaging(0.716) TCGA-GC-A3RD-01 11 4869946 4869946 G A OR51S1 Silent p.L165L 0.21 TCGA-GC-A3RD-01 11 5009489 5009489 C T MMP26 Silent p.F16F 0.42 TCGA-GC-A3RD-01 11 58962721 58962721 G C DTX4 Missense_Mutation p.G472A 0.25 deleterious(0) probably_damaging(0.996) TCGA-GC-A3RD-01 11 67068497 67068497 G A ANKRD13D Silent p.P370P 0.24 TCGA-GC-A3RD-01 11 71714624 71714624 G C IL18BP 3'Flank 0.14 TCGA-GC-A3RD-01 11 92088561 92088561 G A FAT3 Missense_Mutation p.D1095N 0.17 benign(0.295) TCGA-GC-A3RD-01 11 94039818 94039818 C T FOLR4 Missense_Mutation p.A93V 0.28 deleterious(0.02) possibly_damaging(0.713) TCGA-GC-A3RD-01 12 4920041 4920041 C T KCNA6 Silent p.L278L 0.25 TCGA-GC-A3RD-01 12 49434618 49434618 G A KMT2D Missense_Mutation p.S2312L 0.24 possibly_damaging(0.449) TCGA-GC-A3RD-01 12 69652453 69652453 C T CPSF6 Missense_Mutation p.P260S 0.03 tolerated(0.48) unknown(0) TCGA-GC-A3RD-01 12 93803827 93803827 C T UBE2N Missense_Mutation p.M149I 0.36 tolerated(0.06) benign(0) TCGA-GC-A3RD-01 13 114138370 114138370 T C DCUN1D2 Missense_Mutation p.H2R 0.81 tolerated(0.06) benign(0.016) TCGA-GC-A3RD-01 13 24868942 24868942 G A SPATA13 Missense_Mutation p.R1049H 0.10 deleterious(0.01) possibly_damaging(0.839) TCGA-GC-A3RD-01 13 79928636 79928636 G C RBM26 Missense_Mutation p.P639A 0.80 tolerated(0.6) probably_damaging(0.987) TCGA-GC-A3RD-01 15 48905226 48905226 G T FBN1 Silent p.G76G 0.20 TCGA-GC-A3RD-01 15 50158634 50158634 G A ATP8B4 Silent p.I1025I 0.31 TCGA-GC-A3RD-01 15 50189507 50189507 G A ATP8B4 Silent p.F893F 0.23 TCGA-GC-A3RD-01 15 52903959 52903959 G A FAM214A Nonsense_Mutation p.R73* 0.24 TCGA-GC-A3RD-01 15 56961028 56961028 C G ZNF280D Missense_Mutation p.G513A 0.20 deleterious(0) probably_damaging(0.927) TCGA-GC-A3RD-01 15 76994184 76994184 A T SCAPER Missense_Mutation p.F808Y 0.39 tolerated(0.06) benign(0.028) TCGA-GC-A3RD-01 15 83532988 83532988 C A HOMER2 Silent p.V106V 0.19 TCGA-GC-A3RD-01 15 83933066 83933066 T C BNC1 Missense_Mutation p.K313E 0.20 tolerated(0.49) benign(0.002) TCGA-GC-A3RD-01 16 22320249 22320249 G A POLR3E Missense_Mutation p.E57K 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-GC-A3RD-01 16 3828084 3828085 - C CREBBP Frame_Shift_Ins p.N681Efs*45 0.25 TCGA-GC-A3RD-01 16 54966775 54966775 G A IRX5 Silent p.Q205Q 0.24 TCGA-GC-A3RD-01 17 3974013 3974013 C T ZZEF1 Missense_Mutation p.R1347H 0.30 tolerated(0.43) benign(0.001) TCGA-GC-A3RD-01 17 40948740 40948740 C A WNK4 3'UTR 0.65 TCGA-GC-A3RD-01 17 48149456 48149456 C T ITGA3 Missense_Mutation p.H356Y 0.29 deleterious(0.02) benign(0.162) TCGA-GC-A3RD-01 17 48917902 48917902 G A WFIKKN2 Missense_Mutation p.G418D 0.33 deleterious(0) probably_damaging(1) TCGA-GC-A3RD-01 17 49710985 49710985 C A CA10 Missense_Mutation p.Q272H 0.25 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RD-01 17 7838454 7838454 C A CNTROB Silent p.T195T 0.10 TCGA-GC-A3RD-01 19 36369487 36369487 G A APLP1 Silent p.G527G 0.21 TCGA-GC-A3RD-01 19 39191751 39191751 C T ACTN4 Silent p.I129I 0.35 TCGA-GC-A3RD-01 19 45656276 45656276 G C NKPD1 Silent p.L473L 0.30 TCGA-GC-A3RD-01 19 45656867 45656867 G T NKPD1 Missense_Mutation p.F276L 0.30 deleterious(0.01) probably_damaging(0.959) TCGA-GC-A3RD-01 19 47646815 47646815 C T SAE1 Missense_Mutation p.L55F 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-GC-A3RD-01 19 51228559 51228559 C T CLEC11A Silent p.R269R 0.53 TCGA-GC-A3RD-01 19 52498046 52498046 G A ZNF615 Nonsense_Mutation p.Q106* 0.52 TCGA-GC-A3RD-01 19 54544246 54544246 C A VSTM1 Missense_Mutation p.G227V 0.48 deleterious(0.01) possibly_damaging(0.526) TCGA-GC-A3RD-01 19 56104596 56104596 G A FIZ1 Silent p.F237F 0.38 TCGA-GC-A3RD-01 19 6750343 6750343 G T TRIP10 Missense_Mutation p.R423L 0.21 deleterious(0.03) benign(0.123) TCGA-GC-A3RD-01 1 1222339 1222339 G C SCNN1D Missense_Mutation p.R368T 0.50 deleterious(0.04) benign(0.351) TCGA-GC-A3RD-01 1 154310255 154310255 T A ATP8B2 Intron 0.50 TCGA-GC-A3RD-01 1 16053704 16053704 G A PLEKHM2 Silent p.P379P 0.33 TCGA-GC-A3RD-01 1 203024673 203024673 C A PPFIA4 Missense_Mutation p.S142Y 0.22 deleterious(0.03) possibly_damaging(0.873) TCGA-GC-A3RD-01 1 248366372 248366372 G - OR2M3 Frame_Shift_Del p.A2Qfs*129 0.20 TCGA-GC-A3RD-01 1 32479574 32479574 C T KHDRBS1 5'UTR 0.60 TCGA-GC-A3RD-01 1 37945897 37945897 G T ZC3H12A Silent p.G150G 0.12 TCGA-GC-A3RD-01 1 37945923 37945923 G A ZC3H12A Missense_Mutation p.G159D 0.15 deleterious(0) probably_damaging(0.999) TCGA-GC-A3RD-01 1 37946006 37946006 C T ZC3H12A Missense_Mutation p.P187S 0.09 tolerated(0.11) probably_damaging(1) TCGA-GC-A3RD-01 1 44137208 44137208 G C KDM4A Missense_Mutation p.E466Q 0.07 tolerated(0.29) benign(0.109) TCGA-GC-A3RD-01 1 44137256 44137256 G C KDM4A Missense_Mutation p.A482P 0.07 tolerated(0.21) benign(0.002) TCGA-GC-A3RD-01 1 44137463 44137463 G C KDM4A Missense_Mutation p.D551H 0.12 deleterious(0.05) possibly_damaging(0.667) TCGA-GC-A3RD-01 1 45242394 45242394 G A RPS8 Silent p.K53K 0.18 TCGA-GC-A3RD-01 1 47725990 47725990 C G STIL Missense_Mutation p.K1017N 0.81 deleterious(0.04) benign(0.057) TCGA-GC-A3RD-01 20 31024350 31024350 G A ASXL1 Missense_Mutation p.V1279M 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.789) TCGA-GC-A3RD-01 20 34389477 34389477 C T PHF20 Silent p.I11I 0.25 TCGA-GC-A3RD-01 20 56137883 56137883 G A PCK1 Missense_Mutation p.V180I 0.13 deleterious(0.05) benign(0.362) TCGA-GC-A3RD-01 21 33671325 33671325 G A MRAP Missense_Mutation p.E15K 0.19 deleterious(0) probably_damaging(0.986) TCGA-GC-A3RD-01 21 41452089 41452089 G T DSCAM Silent p.T1470T 0.08 TCGA-GC-A3RD-01 21 46875522 46875522 G C COL18A1 Silent p.L26L 0.18 TCGA-GC-A3RD-01 21 47847643 47847643 C T PCNT Silent p.L2476L 0.16 TCGA-GC-A3RD-01 22 31489677 31489677 C T SMTN Intron 0.50 TCGA-GC-A3RD-01 22 36141976 36141976 G A RBFOX2 Silent p.G435G 0.06 TCGA-GC-A3RD-01 22 46765614 46765614 G A CELSR1 Missense_Mutation p.A2616V 0.18 tolerated(0.18) benign(0.243) TCGA-GC-A3RD-01 2 210654275 210654275 C A UNC80 Silent p.I248I 0.35 TCGA-GC-A3RD-01 2 226516442 226516442 C G NYAP2 3'UTR 0.41 TCGA-GC-A3RD-01 2 242523903 242523903 C G THAP4 3'UTR 0.48 TCGA-GC-A3RD-01 2 29073986 29073986 G C TRMT61B Missense_Mutation p.Q422E 0.82 tolerated(0.43) benign(0.009) TCGA-GC-A3RD-01 2 43927132 43927132 A G PLEKHH2 Silent p.R345R 0.21 TCGA-GC-A3RD-01 2 89326682 89326682 G T IGKV3-11 Missense_Mutation p.R111S 0.39 tolerated(0.42) benign(0) TCGA-GC-A3RD-01 2 90139112 90139112 T A IGKV1D-16 Missense_Mutation p.M3K 0.18 deleterious_low_confidence(0.01) benign(0.027) TCGA-GC-A3RD-01 3 10417249 10417249 C T ATP2B2 Silent p.P427P 0.25 TCGA-GC-A3RD-01 3 150301704 150301704 C T EIF2A 3'UTR 0.16 TCGA-GC-A3RD-01 3 74350837 74350837 G C CNTN3 Missense_Mutation p.R636G 0.26 deleterious(0) probably_damaging(1) TCGA-GC-A3RD-01 4 114280167 114280167 G T ANK2 Nonsense_Mutation p.E3465* 0.25 TCGA-GC-A3RD-01 4 153244232 153244232 T C FBXW7 Missense_Mutation p.D642G 0.21 deleterious(0) probably_damaging(1) TCGA-GC-A3RD-01 4 69811101 69811101 C G UGT2A3 Missense_Mutation p.E263Q 0.22 tolerated(0.07) possibly_damaging(0.58) TCGA-GC-A3RD-01 5 140202795 140202795 C T PCDHA5 Missense_Mutation p.R479W 0.43 tolerated_low_confidence(0.13) benign(0.068) TCGA-GC-A3RD-01 5 140230125 140230125 C T PCDHA9 Missense_Mutation p.A682V 0.41 tolerated_low_confidence(0.3) benign(0.002) TCGA-GC-A3RD-01 5 179263552 179263552 C T SQSTM1 Silent p.L428L 0.30 TCGA-GC-A3RD-01 5 55063741 55063741 C T DDX4 Missense_Mutation p.R123W 0.29 tolerated_low_confidence(0.05) benign(0.006) TCGA-GC-A3RD-01 5 89923175 89923175 G T GPR98 Nonsense_Mutation p.E274* 0.16 TCGA-GC-A3RD-01 5 89923397 89923397 G A GPR98 Missense_Mutation p.D348N 0.24 possibly_damaging(0.811) TCGA-GC-A3RD-01 6 130762085 130762085 T C TMEM200A Missense_Mutation p.L173P 0.26 deleterious(0) possibly_damaging(0.844) TCGA-GC-A3RD-01 6 160500714 160500721 ACCAAGGG - IGF2R Frame_Shift_Del p.T1861Gfs*18 0.26 TCGA-GC-A3RD-01 6 24134552 24134552 A G NRSN1 5'UTR 0.35 TCGA-GC-A3RD-01 6 25861865 25861865 G T SLC17A3 Missense_Mutation p.S204R 0.30 tolerated(0.05) possibly_damaging(0.481) TCGA-GC-A3RD-01 6 27861467 27861477 GCGAGGCTTCC - HIST1H2BO Frame_Shift_Del p.G76Afs*? 0.36 TCGA-GC-A3RD-01 6 33990564 33990564 G A GRM4 3'UTR 0.24 TCGA-GC-A3RD-01 6 62757854 62757854 T A KHDRBS2 Nonsense_Mutation p.K89* 0.35 TCGA-GC-A3RD-01 6 71665845 71665845 C T B3GAT2 Silent p.A96A 0.30 TCGA-GC-A3RD-01 6 99991368 99991368 A G CCNC 3'UTR 0.48 TCGA-GC-A3RD-01 7 100252715 100252716 - T ACTL6B Frame_Shift_Ins p.I99Nfs*13 0.22 TCGA-GC-A3RD-01 7 103007921 103007921 G C PSMC2 Silent p.L302L 0.21 TCGA-GC-A3RD-01 7 103007988 103007988 G A PSMC2 Missense_Mutation p.D325N 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-GC-A3RD-01 7 103008039 103008039 G A PSMC2 Missense_Mutation p.E342K 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-GC-A3RD-01 7 103008218 103008218 G A PSMC2 Missense_Mutation p.R369K 0.23 tolerated(0.06) probably_damaging(0.986) TCGA-GC-A3RD-01 7 103008346 103008346 G A PSMC2 Missense_Mutation p.A383T 0.20 deleterious(0) probably_damaging(0.996) TCGA-GC-A3RD-01 7 103008392 103008392 G A PSMC2 Missense_Mutation p.R398K 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-GC-A3RD-01 7 103008417 103008417 G A PSMC2 Silent p.E406E 0.19 TCGA-GC-A3RD-01 7 21469484 21469484 G C SP4 Missense_Mutation p.R234T 0.12 tolerated(0.05) possibly_damaging(0.879) TCGA-GC-A3RD-01 7 64864186 64864186 C T ZNF92 Missense_Mutation p.H387Y 0.46 deleterious(0) probably_damaging(0.998) TCGA-GC-A3RD-01 7 6634164 6634164 C T C7orf26 Silent p.F171F 0.07 TCGA-GC-A3RD-01 7 94043017 94043017 G A COL1A2 Missense_Mutation p.D525N 0.40 unknown(0) TCGA-GC-A3RD-01 8 104388121 104388121 G A CTHRC1 Nonsense_Mutation p.W102* 0.13 TCGA-GC-A3RD-01 9 100090299 100090299 C A CCDC180 Intron 0.19 TCGA-GC-A3RD-01 9 115806366 115806366 C G ZFP37 Missense_Mutation p.E178Q 0.17 deleterious(0.02) benign(0.146) TCGA-GC-A3RD-01 9 118982346 118982346 C A PAPPA Silent p.G683G 0.38 TCGA-GC-A3RD-01 9 125797575 125797575 G A GPR21 Missense_Mutation p.A244T 0.24 tolerated(0.57) benign(0.008) TCGA-GC-A3RD-01 X 118223492 118223492 G A KIAA1210 Silent p.G567G 0.36 TCGA-GC-A3RD-01 X 2825476 2825476 C T ARSD Missense_Mutation p.V540M 0.29 deleterious(0.01) possibly_damaging(0.792) TCGA-GC-A3RD-01 X 32235148 32235148 C T DMD Missense_Mutation p.R2108H 0.56 benign(0) TCGA-GC-A3WC-01 10 102738085 102738085 G A SEMA4G Missense_Mutation p.E157K 0.31 deleterious(0) probably_damaging(0.997) TCGA-GC-A3WC-01 10 123846852 123846852 G T TACC2 Missense_Mutation p.D1613Y 0.23 possibly_damaging(0.702) TCGA-GC-A3WC-01 10 25885648 25885648 C G GPR158 Missense_Mutation p.S692C 0.25 deleterious(0) probably_damaging(0.993) TCGA-GC-A3WC-01 10 28032225 28032225 G A MKX Silent p.R40R 0.21 TCGA-GC-A3WC-01 10 45496299 45496299 C A C10orf25 Silent p.P3P 0.33 TCGA-GC-A3WC-01 10 71002944 71002944 G A HKDC1 Missense_Mutation p.G233D 0.16 deleterious(0) probably_damaging(0.991) TCGA-GC-A3WC-01 10 72358594 72358594 T C PRF1 Missense_Mutation p.T295A 0.26 tolerated(0.56) benign(0.002) TCGA-GC-A3WC-01 11 10514903 10514903 C T AMPD3 Missense_Mutation p.T325I 0.21 deleterious(0.01) probably_damaging(1) TCGA-GC-A3WC-01 11 111558772 111558772 A T SIK2 Nonsense_Mutation p.K122* 0.18 TCGA-GC-A3WC-01 11 118382708 118382708 C G KMT2A Nonsense_Mutation p.S3705* 0.15 TCGA-GC-A3WC-01 11 124179947 124179947 C T OR8D1 Missense_Mutation p.G239E 0.22 deleterious(0) possibly_damaging(0.907) TCGA-GC-A3WC-01 11 124252654 124252654 C T OR8B2 Missense_Mutation p.E196K 0.16 tolerated_low_confidence(0.05) benign(0.038) TCGA-GC-A3WC-01 11 128840032 128840032 C T ARHGAP32 Silent p.L1678L 0.18 TCGA-GC-A3WC-01 11 1977518 1977518 G A MRPL23 Silent p.L110L 0.12 TCGA-GC-A3WC-01 11 3062114 3062114 C T CARS Intron 0.20 TCGA-GC-A3WC-01 11 35454248 35454248 C T PAMR1 Missense_Mutation p.V624M 0.15 tolerated(0.18) benign(0.039) TCGA-GC-A3WC-01 11 55653304 55653304 G T TRIM51 Nonsense_Mutation p.E134* 0.16 TCGA-GC-A3WC-01 11 5686559 5686559 C T TRIM5 Missense_Mutation p.S321N 0.16 tolerated(0.25) benign(0.119) TCGA-GC-A3WC-01 11 66605889 66605889 G A C11orf80 Missense_Mutation p.D574N 0.16 deleterious(0.02) benign(0.124) TCGA-GC-A3WC-01 11 67414351 67414351 G C ACY3 Missense_Mutation p.P55R 0.24 deleterious(0) probably_damaging(0.985) TCGA-GC-A3WC-01 11 67934409 67934409 T C SUV420H1 Intron 0.15 TCGA-GC-A3WC-01 11 70224377 70224377 C T PPFIA1 Intron 0.13 TCGA-GC-A3WC-01 11 78399233 78399233 G T TENM4 Missense_Mutation p.P1709H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A3WC-01 11 8483449 8483449 C A STK33 Missense_Mutation p.S154I 0.22 deleterious(0.01) probably_damaging(0.914) TCGA-GC-A3WC-01 11 88241720 88241720 C G GRM5 3'UTR 0.14 TCGA-GC-A3WC-01 12 101333128 101333128 G A ANO4 Missense_Mutation p.E31K 0.26 deleterious(0.04) benign(0.117) TCGA-GC-A3WC-01 12 101505408 101505408 G C ANO4 Silent p.A755A 0.21 TCGA-GC-A3WC-01 12 113532886 113532886 G A DTX1 Missense_Mutation p.G476R 0.15 deleterious(0) probably_damaging(0.994) TCGA-GC-A3WC-01 12 122670812 122670812 G A LRRC43 Missense_Mutation p.E163K 0.20 tolerated(0.26) benign(0.413) TCGA-GC-A3WC-01 12 39047685 39047685 C T CPNE8 Silent p.%3D 0.16 TCGA-GC-A3WC-01 12 46125015 46125015 C T ARID2 Nonsense_Mutation p.Q68* 0.20 TCGA-GC-A3WC-01 12 461469 461469 C T KDM5A Missense_Mutation p.A351T 0.20 deleterious(0) possibly_damaging(0.814) TCGA-GC-A3WC-01 12 48723522 48723522 G A H1FNT Missense_Mutation p.A150T 0.23 tolerated(0.74) possibly_damaging(0.695) TCGA-GC-A3WC-01 12 49444142 49444142 T A KMT2D Nonsense_Mutation p.K1077* 0.14 TCGA-GC-A3WC-01 12 56349288 56349288 G C PMEL Silent p.T574T 0.16 TCGA-GC-A3WC-01 12 56647181 56647181 C T ANKRD52 Missense_Mutation p.E331K 0.18 deleterious(0.04) benign(0.359) TCGA-GC-A3WC-01 12 6484078 6484078 C A SCNN1A Nonsense_Mutation p.E17* 0.16 TCGA-GC-A3WC-01 12 6982092 6982092 G A SPSB2 5'UTR 0.22 TCGA-GC-A3WC-01 12 70070717 70070717 G A BEST3 Silent p.F282F 0.16 TCGA-GC-A3WC-01 12 7882185 7882185 A G CLEC4C 3'UTR 0.17 TCGA-GC-A3WC-01 12 95397387 95397387 G T NDUFA12 Missense_Mutation p.L24I 0.15 tolerated(0.25) benign(0.006) TCGA-GC-A3WC-01 12 9913402 9913402 A G CD69 Silent p.N5N 0.12 TCGA-GC-A3WC-01 13 111176499 111176499 G A RAB20 Missense_Mutation p.A73V 0.26 deleterious(0) probably_damaging(1) TCGA-GC-A3WC-01 13 25338323 25338323 C T RNF17 5'UTR 0.16 TCGA-GC-A3WC-01 13 73636680 73636683 CAAG - KLF5 Frame_Shift_Del p.A316Rfs*6 0.15 TCGA-GC-A3WC-01 13 79176005 79176005 C G POU4F1 Missense_Mutation p.E269Q 0.17 deleterious(0) unknown(0) TCGA-GC-A3WC-01 14 104027261 104027261 C G BAG5 Missense_Mutation p.E122Q 0.20 tolerated(0.09) probably_damaging(0.969) TCGA-GC-A3WC-01 14 21486650 21486650 G C NDRG2 Nonsense_Mutation p.S276* 0.17 TCGA-GC-A3WC-01 14 24808466 24808466 C G RIPK3 Missense_Mutation p.E76Q 0.20 deleterious(0) benign(0.124) TCGA-GC-A3WC-01 14 31354171 31354171 G C COCH Intron 0.24 TCGA-GC-A3WC-01 14 68228128 68228128 C T ZFYVE26 Silent p.V2181V 0.20 TCGA-GC-A3WC-01 14 73753886 73753886 C G NUMB Missense_Mutation p.R196P 0.15 deleterious(0) probably_damaging(0.997) TCGA-GC-A3WC-01 14 74665693 74665693 G A LIN52 3'UTR 0.18 TCGA-GC-A3WC-01 15 101718791 101718791 G A CHSY1 Missense_Mutation p.A404V 0.17 deleterious(0) probably_damaging(0.969) TCGA-GC-A3WC-01 15 38746340 38746340 G A FAM98B 5'UTR 0.31 TCGA-GC-A3WC-01 15 40594185 40594185 G C PLCB2 Silent p.L185L 0.19 TCGA-GC-A3WC-01 15 41388442 41388442 G A INO80 Nonsense_Mutation p.Q23* 0.09 TCGA-GC-A3WC-01 15 62993399 62993399 T G TLN2 Missense_Mutation p.V561G 0.10 deleterious(0) probably_damaging(0.954) TCGA-GC-A3WC-01 15 72186022 72186022 C G MYO9A Missense_Mutation p.E1714Q 0.16 tolerated_low_confidence(0.12) benign(0.006) TCGA-GC-A3WC-01 15 72432366 72432366 G C SENP8 Missense_Mutation p.E134D 0.13 tolerated(0.59) benign(0.002) TCGA-GC-A3WC-01 15 93043758 93043758 G T C15orf32 3'UTR 0.22 TCGA-GC-A3WC-01 15 94857556 94857556 C T MCTP2 Missense_Mutation p.H171Y 0.16 tolerated(1) benign(0.017) TCGA-GC-A3WC-01 16 2836613 2836613 C T PRSS33 5'UTR 0.23 TCGA-GC-A3WC-01 16 3073515 3073517 CTC - HCFC1R1 In_Frame_Del p.G37del 0.16 TCGA-GC-A3WC-01 16 5123174 5123174 T C ALG1 Missense_Mutation p.Y103H 0.24 deleterious(0) probably_damaging(0.98) TCGA-GC-A3WC-01 16 81888168 81888168 G A PLCG2 Missense_Mutation p.V105I 0.23 tolerated(0.07) benign(0.027) TCGA-GC-A3WC-01 17 12819241 12819241 G C ARHGAP44 Missense_Mutation p.E100D 0.29 tolerated(0.44) benign(0.012) TCGA-GC-A3WC-01 17 12819326 12819326 G A ARHGAP44 Missense_Mutation p.E129K 0.24 deleterious(0) probably_damaging(0.99) TCGA-GC-A3WC-01 17 18394613 18394613 G A LGALS9C Silent p.Q201Q 0.15 TCGA-GC-A3WC-01 17 32483149 32483149 C T ASIC2 Missense_Mutation p.E135K 0.17 tolerated(0.47) benign(0.062) TCGA-GC-A3WC-01 17 38498963 38498963 G C RARA Intron 0.17 TCGA-GC-A3WC-01 17 39727637 39727637 G A KRT9 Missense_Mutation p.P203L 0.17 tolerated(0.26) benign(0.381) TCGA-GC-A3WC-01 17 74774367 74774367 C T MFSD11 Missense_Mutation p.S428F 0.12 deleterious(0.02) benign(0.372) TCGA-GC-A3WC-01 17 74774374 74774374 C T MFSD11 Silent p.F430F 0.12 TCGA-GC-A3WC-01 17 7557218 7557218 G A ATP1B2 Missense_Mutation p.E101K 0.17 tolerated(0.43) benign(0.328) TCGA-GC-A3WC-01 17 7577082 7577082 C A TP53 Nonsense_Mutation p.E286* 0.26 TCGA-GC-A3WC-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.16 deleterious(0) probably_damaging(1) TCGA-GC-A3WC-01 17 79803505 79803505 C G P4HB Missense_Mutation p.E431Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-GC-A3WC-01 17 79804359 79804359 C T P4HB Silent p.L334L 0.17 TCGA-GC-A3WC-01 18 20832925 20832925 C A CABLES1 Missense_Mutation p.T483K 0.21 deleterious(0) probably_damaging(0.972) TCGA-GC-A3WC-01 18 9931810 9931810 C T VAPA Missense_Mutation p.P28L 0.18 deleterious(0) probably_damaging(0.971) TCGA-GC-A3WC-01 19 10610363 10610363 C G KEAP1 Missense_Mutation p.R116P 0.15 deleterious(0) probably_damaging(0.962) TCGA-GC-A3WC-01 19 12995588 12995588 C T KLF1 3'UTR 0.30 TCGA-GC-A3WC-01 19 13033556 13033556 C A FARSA 3'UTR 0.18 TCGA-GC-A3WC-01 19 13476201 13476201 A G CACNA1A Silent p.L238L 0.13 TCGA-GC-A3WC-01 19 17088246 17088246 C T CPAMD8 Missense_Mutation p.V611I 0.14 tolerated(0.09) probably_damaging(0.965) TCGA-GC-A3WC-01 19 17476791 17476791 C T PLVAP Silent p.L161L 0.15 TCGA-GC-A3WC-01 19 17487766 17487766 C T PLVAP Missense_Mutation p.R111H 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-GC-A3WC-01 19 18174767 18174767 C T IL12RB1 Missense_Mutation p.G513S 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-GC-A3WC-01 19 18547041 18547041 G A ISYNA1 Missense_Mutation p.S259L 0.13 deleterious(0) probably_damaging(0.999) TCGA-GC-A3WC-01 19 19640241 19640241 C G NDUFA13 3'Flank 0.15 TCGA-GC-A3WC-01 19 36221656 36221656 G A KMT2B Nonsense_Mutation p.W1775* 0.12 TCGA-GC-A3WC-01 19 36222827 36222828 - C KMT2B Frame_Shift_Ins p.L1822Tfs*12 0.11 TCGA-GC-A3WC-01 19 40374024 40374024 G A FCGBP Silent p.V4018V 0.09 TCGA-GC-A3WC-01 19 46387808 46387808 C T IRF2BP1 Missense_Mutation p.G409S 0.16 tolerated(0.77) benign(0.001) TCGA-GC-A3WC-01 19 47440647 47440647 G T ARHGAP35 Nonsense_Mutation p.E1270* 0.20 TCGA-GC-A3WC-01 19 49649227 49649227 G T PPFIA3 Nonsense_Mutation p.E925* 0.15 TCGA-GC-A3WC-01 19 50939937 50939937 G C MYBPC2 Missense_Mutation p.E137Q 0.17 deleterious(0.01) possibly_damaging(0.83) TCGA-GC-A3WC-01 1 102312479 102312479 C G OLFM3 Intron 0.20 TCGA-GC-A3WC-01 1 110581817 110581817 C T STRIP1 Silent p.L117L 0.21 TCGA-GC-A3WC-01 1 145438895 145438895 G C TXNIP Silent p.V31V 0.07 TCGA-GC-A3WC-01 1 145439609 145439609 G C TXNIP Silent p.V89V 0.12 TCGA-GC-A3WC-01 1 145440274 145440274 G A TXNIP Missense_Mutation p.E194K 0.12 tolerated(0.28) benign(0.11) TCGA-GC-A3WC-01 1 145584822 145584822 C A PIAS3 Missense_Mutation p.Q536K 0.29 tolerated_low_confidence(0.09) benign(0.366) TCGA-GC-A3WC-01 1 150923371 150923371 A G SETDB1 Missense_Mutation p.Y673C 0.30 tolerated(0.16) possibly_damaging(0.576) TCGA-GC-A3WC-01 1 151108092 151108092 C G SEMA6C Missense_Mutation p.E470Q 0.35 deleterious(0) benign(0.284) TCGA-GC-A3WC-01 1 154112367 154112367 C G NUP210L Missense_Mutation p.E210Q 0.30 tolerated(0.55) benign(0.009) TCGA-GC-A3WC-01 1 155737281 155737281 T A GON4L Missense_Mutation p.I900F 0.25 tolerated(0.08) probably_damaging(0.964) TCGA-GC-A3WC-01 1 16953703 16953703 G A CROCCP2 3'Flank 0.05 TCGA-GC-A3WC-01 1 180243750 180243750 T A LHX4 3'UTR 0.13 TCGA-GC-A3WC-01 1 19487443 19487443 C T UBR4 Missense_Mutation p.V1792I 0.13 benign(0) TCGA-GC-A3WC-01 1 19584362 19584362 G C MRTO4 Missense_Mutation p.R126P 0.15 deleterious(0.01) benign(0.037) TCGA-GC-A3WC-01 1 203316731 203316731 C T FMOD Missense_Mutation p.R223Q 0.27 tolerated(0.07) benign(0.007) TCGA-GC-A3WC-01 1 204953164 204953164 C T NFASC Intron 0.30 TCGA-GC-A3WC-01 1 214567095 214567095 A C PTPN14 Missense_Mutation p.I291S 0.25 deleterious(0) possibly_damaging(0.85) TCGA-GC-A3WC-01 1 228473945 228473945 C T OBSCN Silent p.P3486P 0.18 TCGA-GC-A3WC-01 1 28931969 28931969 C T TAF12 Missense_Mutation p.R122H 0.14 deleterious(0.01) benign(0.167) TCGA-GC-A3WC-01 1 50884577 50884577 G A DMRTA2 Silent p.L463L 0.50 TCGA-GC-A3WC-01 1 52838803 52838803 C G ORC1 3'UTR 0.19 TCGA-GC-A3WC-01 1 99771657 99771657 C T LPPR4 Silent p.S461S 0.29 TCGA-GC-A3WC-01 20 16360474 16360474 G A KIF16B Nonsense_Mutation p.Q725* 0.21 TCGA-GC-A3WC-01 20 377161 377161 G A TRIB3 Missense_Mutation p.E302K 0.14 deleterious(0) possibly_damaging(0.825) TCGA-GC-A3WC-01 20 62836958 62836958 G A MYT1 Missense_Mutation p.E68K 0.17 benign(0.001) TCGA-GC-A3WC-01 21 31691783 31691783 T A KRTAP26-1 Missense_Mutation p.S191C 0.14 deleterious(0.03) possibly_damaging(0.87) TCGA-GC-A3WC-01 21 33371331 33371331 G A HUNK Missense_Mutation p.R660Q 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GC-A3WC-01 21 45389127 45389127 G A AGPAT3 Silent p.L159L 0.25 TCGA-GC-A3WC-01 22 19960805 19960805 G A ARVCF Missense_Mutation p.R759C 0.19 deleterious(0) possibly_damaging(0.656) TCGA-GC-A3WC-01 22 26193971 26193971 A G MYO18B Missense_Mutation p.M810V 0.04 deleterious(0) benign(0.106) TCGA-GC-A3WC-01 22 37465272 37465272 C G TMPRSS6 Missense_Mutation p.E661Q 0.14 deleterious(0.03) probably_damaging(0.958) TCGA-GC-A3WC-01 22 38470962 38470962 C G PICK1 Silent p.V357V 0.20 TCGA-GC-A3WC-01 22 40030684 40030684 C A CACNA1I Missense_Mutation p.A232E 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-GC-A3WC-01 22 44464984 44464984 C T PARVB Intron 0.12 TCGA-GC-A3WC-01 2 100903457 100903457 C G LONRF2 Missense_Mutation p.W663C 0.12 deleterious(0) probably_damaging(0.936) TCGA-GC-A3WC-01 2 114355147 114355147 G T WASH2P RNA 0.07 TCGA-GC-A3WC-01 2 131704110 131704110 C T ARHGEF4 Missense_Mutation p.P110L 0.12 deleterious_low_confidence(0) benign(0.102) TCGA-GC-A3WC-01 2 179666927 179666927 T C TTN Missense_Mutation p.Y78C 0.16 TCGA-GC-A3WC-01 2 228195544 228195544 G A MFF Missense_Mutation p.E81K 0.23 deleterious(0) possibly_damaging(0.759) TCGA-GC-A3WC-01 2 27706492 27706492 G C IFT172 Missense_Mutation p.S146C 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-GC-A3WC-01 2 54870186 54870186 C G SPTBN1 Missense_Mutation p.L1309V 0.16 tolerated(0.16) possibly_damaging(0.531) TCGA-GC-A3WC-01 2 9637283 9637283 G A ADAM17 Silent p.F581F 0.27 TCGA-GC-A3WC-01 3 100566463 100566463 G A ABI3BP Missense_Mutation p.P502L 0.43 tolerated(0.19) benign(0.16) TCGA-GC-A3WC-01 3 101060534 101060534 T C SENP7 Silent p.P732P 0.42 TCGA-GC-A3WC-01 3 167750586 167750586 C T GOLIM4 Missense_Mutation p.E300K 0.42 tolerated(0.1) possibly_damaging(0.46) TCGA-GC-A3WC-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.44 deleterious(0.02) probably_damaging(0.984) TCGA-GC-A3WC-01 3 186512453 186512453 C T RFC4 Missense_Mutation p.R135H 0.18 tolerated(0.09) benign(0.12) TCGA-GC-A3WC-01 3 44635868 44635868 G C ZNF660 Missense_Mutation p.Q61H 0.25 tolerated(0.26) possibly_damaging(0.875) TCGA-GC-A3WC-01 3 44635933 44635933 G C ZNF660 Missense_Mutation p.C83S 0.26 deleterious(0) probably_damaging(0.994) TCGA-GC-A3WC-01 3 64132828 64132828 G A PRICKLE2 Silent p.F446F 0.28 TCGA-GC-A3WC-01 3 9506420 9506420 C T SETD5 Intron 0.30 TCGA-GC-A3WC-01 4 153864366 153864366 G A FHDC1 Missense_Mutation p.E53K 0.27 tolerated(0.58) benign(0.021) TCGA-GC-A3WC-01 4 187540391 187540391 G C FAT1 Nonsense_Mutation p.S2450* 0.15 TCGA-GC-A3WC-01 4 25836912 25836912 G C SEL1L3 Missense_Mutation p.S256C 0.20 deleterious(0) probably_damaging(0.999) TCGA-GC-A3WC-01 4 46737107 46737107 G C COX7B2 Missense_Mutation p.H35D 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-GC-A3WC-01 4 7770734 7770734 G A AFAP1 Missense_Mutation p.S752F 0.16 deleterious(0) probably_damaging(0.945) TCGA-GC-A3WC-01 4 83905979 83905979 C T LIN54 Missense_Mutation p.E7K 0.29 deleterious_low_confidence(0) possibly_damaging(0.64) TCGA-GC-A3WC-01 5 102432327 102432327 C T GIN1 Silent p.L404L 0.20 TCGA-GC-A3WC-01 5 128430720 128430720 C T ISOC1 Silent p.F87F 0.14 TCGA-GC-A3WC-01 5 139838425 139838425 G A ANKHD1 Missense_Mutation p.M486I 0.12 unknown(0) TCGA-GC-A3WC-01 5 140250913 140250913 G A PCDHA11 Missense_Mutation p.R742H 0.19 deleterious_low_confidence(0) benign(0.113) TCGA-GC-A3WC-01 5 168179970 168179970 G T SLIT3 Missense_Mutation p.L655M 0.17 deleterious(0) probably_damaging(0.994) TCGA-GC-A3WC-01 5 172517948 172517948 C T CREBRF Missense_Mutation p.H256Y 0.19 tolerated_low_confidence(0.19) benign(0.037) TCGA-GC-A3WC-01 5 37379600 37379600 C T WDR70 Missense_Mutation p.S12L 0.20 tolerated_low_confidence(0.14) benign(0.001) TCGA-GC-A3WC-01 5 5464640 5464640 C G KIAA0947 Silent p.L1731L 0.13 TCGA-GC-A3WC-01 5 68603838 68603838 G A CCDC125 Silent p.A157A 0.12 TCGA-GC-A3WC-01 5 68616398 68616398 A C CCDC125 5'UTR 0.31 TCGA-GC-A3WC-01 5 74077445 74077445 G C FAM169A Missense_Mutation p.S618C 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-GC-A3WC-01 5 81571898 81571898 T G RPS23 3'UTR 0.16 TCGA-GC-A3WC-01 6 110567226 110567226 G A METTL24 Nonsense_Mutation p.Q342* 0.14 TCGA-GC-A3WC-01 6 126210736 126210736 C T NCOA7 Silent p.N512N 0.18 TCGA-GC-A3WC-01 6 154732170 154732170 G C CNKSR3 Missense_Mutation p.R393G 0.08 tolerated(0.19) benign(0.045) TCGA-GC-A3WC-01 6 17675190 17675190 G A NUP153 Silent p.Y266Y 0.21 TCGA-GC-A3WC-01 6 24429286 24429286 G C GPLD1 Missense_Mutation p.H833D 0.12 deleterious(0.02) possibly_damaging(0.701) TCGA-GC-A3WC-01 6 30675515 30675515 C T MDC1 Silent p.Q947Q 0.18 TCGA-GC-A3WC-01 6 33142356 33142356 C T COL11A2 Missense_Mutation p.G707D 0.07 probably_damaging(0.969) TCGA-GC-A3WC-01 6 38854693 38854693 C T DNAH8 Nonsense_Mutation p.R2579* 0.20 TCGA-GC-A3WC-01 6 51524597 51524597 T C PKHD1 Missense_Mutation p.S3443G 0.20 tolerated(0.41) benign(0.006) TCGA-GC-A3WC-01 6 96053848 96053848 G A MANEA Missense_Mutation p.G319E 0.19 deleterious(0) probably_damaging(1) TCGA-GC-A3WC-01 7 100028509 100028509 C A MEPCE Missense_Mutation p.L290I 0.26 tolerated(0.35) benign(0.086) TCGA-GC-A3WC-01 7 100210383 100210383 T C MOSPD3 5'UTR 0.15 TCGA-GC-A3WC-01 7 111580178 111580178 G A DOCK4 Silent p.L322L 0.15 TCGA-GC-A3WC-01 7 137590506 137590506 G A CREB3L2 Missense_Mutation p.P286L 0.17 deleterious(0) probably_damaging(0.996) TCGA-GC-A3WC-01 7 158935195 158935195 G A VIPR2 Nonsense_Mutation p.Q32* 0.19 TCGA-GC-A3WC-01 7 64377956 64377956 C T ZNF273 Intron 0.15 TCGA-GC-A3WC-01 7 84651768 84651768 C T SEMA3D Silent p.Q451Q 0.17 TCGA-GC-A3WC-01 8 124383508 124383508 C G ATAD2 Missense_Mutation p.E203Q 0.20 deleterious(0.01) possibly_damaging(0.548) TCGA-GC-A3WC-01 8 144886946 144886946 A T SCRIB Missense_Mutation p.L934Q 0.15 probably_damaging(1) TCGA-GC-A3WC-01 8 17611479 17611479 T G MTUS1 Missense_Mutation p.E613A 0.21 deleterious(0) possibly_damaging(0.611) TCGA-GC-A3WC-01 8 68956794 68956794 G C PREX2 Silent p.V304V 0.10 TCGA-GC-A3WC-01 8 79609675 79609675 C G ZC2HC1A Missense_Mutation p.P180A 0.13 tolerated(0.22) benign(0.008) TCGA-GC-A3WC-01 8 88218312 88218312 C T CNBD1 Silent p.L175L 0.11 TCGA-GC-A3WC-01 9 100991351 100991351 C G TBC1D2 Missense_Mutation p.Q287H 0.12 tolerated(0.17) benign(0.003) TCGA-GC-A3WC-01 9 127642825 127642825 C T GOLGA1 Missense_Mutation p.R763Q 0.12 tolerated(0.05) probably_damaging(0.998) TCGA-GC-A3WC-01 9 131760889 131760889 C T NUP188 Missense_Mutation p.R1168W 0.14 deleterious(0.01) possibly_damaging(0.852) TCGA-GC-A3WC-01 9 139698986 139698986 C G CCDC183 Missense_Mutation p.I233M 0.42 tolerated(0.06) benign(0.44) TCGA-GC-A3WC-01 9 139754396 139754396 C G MAMDC4 Silent p.L1084L 0.33 TCGA-GC-A3WC-01 9 140174221 140174221 C G TOR4A Missense_Mutation p.I360M 0.42 deleterious(0) possibly_damaging(0.469) TCGA-GC-A3WC-01 9 3330299 3330299 C T RFX3 Missense_Mutation p.G145D 0.10 tolerated(0.62) benign(0.022) TCGA-GC-A3WC-01 9 336580 336580 A T DOCK8 Splice_Site p.X429_splice 0.18 TCGA-GC-A3WC-01 X 111019559 111019559 T C TRPC5 Silent p.Q968Q 0.07 TCGA-GC-A3WC-01 X 117814457 117814457 G A DOCK11 Missense_Mutation p.E1825K 0.16 deleterious(0.02) benign(0.05) TCGA-GC-A3WC-01 X 12906301 12906301 G C TLR7 Missense_Mutation p.D892H 0.13 deleterious(0) probably_damaging(0.999) TCGA-GC-A3WC-01 X 139866027 139866027 G C CDR1 Missense_Mutation p.R169G 0.19 tolerated(0.35) benign(0.433) TCGA-GC-A3WC-01 X 14550396 14550396 G C GLRA2 Missense_Mutation p.G35A 0.21 tolerated(1) benign(0) TCGA-GC-A3WC-01 X 149013352 149013352 T C MAGEA8 Silent p.A102A 0.16 TCGA-GC-A3WC-01 X 22094533 22094533 G C PHEX Missense_Mutation p.R126T 0.12 tolerated(0.51) benign(0.366) TCGA-GC-A3WC-01 X 50117981 50117981 C T DGKK RNA 0.12 TCGA-GC-A3WC-01 X 54496484 54496484 G A FGD1 Missense_Mutation p.P356S 0.18 tolerated(0.09) possibly_damaging(0.857) TCGA-GC-A3WC-01 X 73070139 73070139 G C XIST RNA 0.15 TCGA-GC-A3YS-01 10 104404923 104404923 G T TRIM8 Missense_Mutation p.E183D 0.43 tolerated(0.49) benign(0.015) TCGA-GC-A3YS-01 10 105927390 105927390 C T WDR96 Missense_Mutation p.E933K 0.29 tolerated(0.12) possibly_damaging(0.457) TCGA-GC-A3YS-01 10 106937714 106937714 C T SORCS3 Intron 0.58 TCGA-GC-A3YS-01 10 124348677 124348677 T A DMBT1 Missense_Mutation p.D667E 0.53 tolerated(0.16) unknown(0) TCGA-GC-A3YS-01 10 124402857 124402857 C T DMBT1 Silent p.V2395V 0.30 TCGA-GC-A3YS-01 10 129691070 129691070 C G CLRN3 5'UTR 0.20 TCGA-GC-A3YS-01 10 17373460 17373460 C T ST8SIA6 Missense_Mutation p.E157K 0.26 deleterious(0.01) possibly_damaging(0.88) TCGA-GC-A3YS-01 10 21962602 21962602 G A MLLT10 Missense_Mutation p.E459K 0.30 tolerated(0.19) benign(0.16) TCGA-GC-A3YS-01 10 33000562 33000562 T A C10ORF68 Missense_Mutation p.S132T 0.16 tolerated(0.85) possibly_damaging(0.782) TCGA-GC-A3YS-01 10 37508817 37508817 G A ANKRD30A Missense_Mutation p.E1337K 0.13 deleterious(0) possibly_damaging(0.636) TCGA-GC-A3YS-01 10 43016561 43016561 T A ZNF37BP RNA 0.28 TCGA-GC-A3YS-01 10 43620387 43620387 C A RET Missense_Mutation p.A999E 0.25 tolerated(0.1) possibly_damaging(0.521) TCGA-GC-A3YS-01 10 46918272 46918272 G A RP11-38L15.8 5'Flank 0.33 TCGA-GC-A3YS-01 10 46967428 46967428 G A SYT15 Nonsense_Mutation p.Q217* 0.09 TCGA-GC-A3YS-01 10 69672769 69672769 G C SIRT1 Missense_Mutation p.Q632H 0.26 deleterious(0.02) possibly_damaging(0.885) TCGA-GC-A3YS-01 10 75013824 75013824 G A TTC18 Intron 0.41 TCGA-GC-A3YS-01 10 75391879 75391879 G T MYOZ1 Missense_Mutation p.R237S 0.15 deleterious(0.02) probably_damaging(0.913) TCGA-GC-A3YS-01 10 82280360 82280360 C T TSPAN14 3'UTR 0.16 TCGA-GC-A3YS-01 11 103049829 103049829 G T DYNC2H1 Missense_Mutation p.D2072Y 0.20 probably_damaging(0.998) TCGA-GC-A3YS-01 11 113856847 113856847 C T HTR3A Missense_Mutation p.R225W 0.28 tolerated(0.26) possibly_damaging(0.84) TCGA-GC-A3YS-01 11 118625512 118625512 C T DDX6 Missense_Mutation p.G454E 0.36 deleterious(0.02) benign(0.069) TCGA-GC-A3YS-01 11 118779098 118779098 T C BCL9L Missense_Mutation p.Q98R 0.38 benign(0.403) TCGA-GC-A3YS-01 11 119290099 119290099 C T THY1 3'UTR 0.47 TCGA-GC-A3YS-01 11 125359281 125359281 G C FEZ1 Intron 0.44 TCGA-GC-A3YS-01 11 128354726 128354726 G A ETS1 Missense_Mutation p.T285I 0.26 tolerated(0.39) benign(0.001) TCGA-GC-A3YS-01 11 14276159 14276159 T A SPON1 RNA 0.26 TCGA-GC-A3YS-01 11 18158728 18158728 C T MRGPRX3 5'UTR 0.34 TCGA-GC-A3YS-01 11 1905742 1905742 G C LSP1 Missense_Mutation p.K344N 0.22 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-GC-A3YS-01 11 36248840 36248840 G A LDLRAD3 Silent p.L220L 0.42 TCGA-GC-A3YS-01 11 55541543 55541543 G A OR5D13 Silent p.V210V 0.15 TCGA-GC-A3YS-01 11 59609985 59609985 C G GIF Missense_Mutation p.E148Q 0.26 tolerated(0.26) possibly_damaging(0.457) TCGA-GC-A3YS-01 11 62951183 62951183 C G SLC22A25 Missense_Mutation p.D313H 0.35 deleterious(0) possibly_damaging(0.897) TCGA-GC-A3YS-01 11 64544068 64544068 C T SF1 Missense_Mutation p.R146H 0.35 deleterious(0.02) possibly_damaging(0.706) TCGA-GC-A3YS-01 11 65393419 65393421 CTT - PCNXL3 In_Frame_Del p.F1093del 0.34 TCGA-GC-A3YS-01 11 67051208 67051208 C T ADRBK1 Silent p.F453F 0.19 TCGA-GC-A3YS-01 11 67068616 67068616 T C ANKRD13D Missense_Mutation p.I410T 0.22 deleterious(0.02) probably_damaging(0.921) TCGA-GC-A3YS-01 11 77301521 77301521 G A AQP11 Missense_Mutation p.D162N 0.30 tolerated(0.12) probably_damaging(0.991) TCGA-GC-A3YS-01 11 82924168 82924168 T C ANKRD42 Intron 0.16 TCGA-GC-A3YS-01 11 95550948 95550948 C T CEP57 Intron 0.39 TCGA-GC-A3YS-01 12 105593247 105593247 G A APPL2 Missense_Mutation p.S262F 0.58 deleterious(0.02) possibly_damaging(0.572) TCGA-GC-A3YS-01 12 107075919 107075919 C A RFX4 Intron 0.29 TCGA-GC-A3YS-01 12 109702055 109702055 A G ACACB Missense_Mutation p.D2269G 0.20 tolerated(0.35) benign(0.034) TCGA-GC-A3YS-01 12 109939197 109939197 G A UBE3B Silent p.L380L 0.60 TCGA-GC-A3YS-01 12 11150218 11150218 T A TAS2R20 Missense_Mutation p.N86I 0.53 tolerated(1) benign(0.041) TCGA-GC-A3YS-01 12 132502842 132502842 C T EP400 Missense_Mutation p.P1400S 0.39 unknown(0) TCGA-GC-A3YS-01 12 15262002 15262002 G A RERG 3'UTR 0.47 TCGA-GC-A3YS-01 12 19406895 19406895 C T PLEKHA5 Silent p.T83T 0.57 TCGA-GC-A3YS-01 12 27235288 27235288 A G C12orf71 Silent p.D43D 0.17 TCGA-GC-A3YS-01 12 45173749 45173749 G C NELL2 Nonsense_Mutation p.S181* 0.16 TCGA-GC-A3YS-01 12 45567959 45567959 C G PLEKHA8P1 RNA 0.24 TCGA-GC-A3YS-01 12 50368531 50368531 C T AQP6 Silent p.I188I 0.60 TCGA-GC-A3YS-01 12 50390835 50390835 G C RACGAP1 Silent p.V344V 0.21 TCGA-GC-A3YS-01 12 53215621 53215621 G A KRT79 3'UTR 0.27 TCGA-GC-A3YS-01 12 56216185 56216185 G A DNAJC14 Missense_Mutation p.R624W 0.21 tolerated(0.07) benign(0.049) TCGA-GC-A3YS-01 12 56427078 56427078 A T IKZF4 Nonsense_Mutation p.K324* 0.10 TCGA-GC-A3YS-01 12 58110272 58110272 G C OS9 Missense_Mutation p.G324R 0.25 tolerated(0.2) benign(0.002) TCGA-GC-A3YS-01 12 62887746 62887746 G T MON2 Missense_Mutation p.G76V 0.10 deleterious(0.04) possibly_damaging(0.775) TCGA-GC-A3YS-01 12 6948245 6948245 C T LEPREL2 Missense_Mutation p.R662W 0.16 deleterious(0) possibly_damaging(0.857) TCGA-GC-A3YS-01 13 101944717 101944717 C G NALCN Missense_Mutation p.G267A 0.46 tolerated(1) benign(0.048) TCGA-GC-A3YS-01 13 113729380 113729380 G A MCF2L Silent p.A395A 0.31 TCGA-GC-A3YS-01 13 21331724 21331724 T A N6AMT2 Missense_Mutation p.E5V 0.12 deleterious(0.01) possibly_damaging(0.551) TCGA-GC-A3YS-01 13 24844985 24844985 C T SPATA13 Intron 0.17 TCGA-GC-A3YS-01 13 25416223 25416223 C G RNF17 Missense_Mutation p.L843V 0.09 tolerated(0.56) benign(0.021) TCGA-GC-A3YS-01 13 37439763 37439763 G C SMAD9 Nonsense_Mutation p.S305* 0.35 TCGA-GC-A3YS-01 13 39918097 39918097 C G LHFP Missense_Mutation p.K193N 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-GC-A3YS-01 13 49037882 49037897 ATGTATGGCATATGCA - RB1 Frame_Shift_Del p.M708Kfs*2 0.15 TCGA-GC-A3YS-01 13 53420180 53420180 C T PCDH8 Missense_Mutation p.G798R 0.25 tolerated(0.57) benign(0.033) TCGA-GC-A3YS-01 13 95114445 95114445 T A DCT Splice_Site p.X288_splice 0.14 TCGA-GC-A3YS-01 14 102549376 102549376 C T HSP90AA1 Missense_Mutation p.E706K 0.50 deleterious_low_confidence(0) unknown(0) TCGA-GC-A3YS-01 14 21167916 21167916 G C RNASE4 Missense_Mutation p.R129T 0.44 deleterious(0) probably_damaging(0.987) TCGA-GC-A3YS-01 14 22476318 22476318 G A TRAV19 Missense_Mutation p.R83Q 0.55 deleterious(0.01) possibly_damaging(0.493) TCGA-GC-A3YS-01 14 35227931 35227931 C G BAZ1A Missense_Mutation p.L1455F 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-GC-A3YS-01 14 68264823 68264823 C T ZFYVE26 Missense_Mutation p.R719K 0.46 tolerated(0.78) benign(0.003) TCGA-GC-A3YS-01 14 77242405 77242405 G A VASH1 Missense_Mutation p.R234H 0.25 deleterious(0) probably_damaging(0.911) TCGA-GC-A3YS-01 14 86089433 86089433 A G FLRT2 Silent p.T525T 0.12 TCGA-GC-A3YS-01 14 93650482 93650482 C A MOAP1 Nonsense_Mutation p.E36* 0.46 TCGA-GC-A3YS-01 14 95999925 95999925 C G GLRX5 5'Flank 0.44 TCGA-GC-A3YS-01 14 99641436 99641436 C T BCL11B Silent p.A579A 0.29 TCGA-GC-A3YS-01 15 28456214 28456214 G T HERC2 Missense_Mutation p.H2335N 0.14 benign(0.152) TCGA-GC-A3YS-01 15 48057100 48057100 C T SEMA6D Missense_Mutation p.S425L 0.26 deleterious(0) benign(0.034) TCGA-GC-A3YS-01 15 89173447 89173447 G A AEN Missense_Mutation p.M300I 0.38 deleterious(0) possibly_damaging(0.718) TCGA-GC-A3YS-01 16 15758666 15758666 G A NDE1 Missense_Mutation p.E11K 0.31 tolerated(0.23) benign(0.016) TCGA-GC-A3YS-01 16 17211827 17211827 C T XYLT1 Missense_Mutation p.D745N 0.17 tolerated(0.2) probably_damaging(0.936) TCGA-GC-A3YS-01 16 27761548 27761548 G A KIAA0556 Silent p.V1089V 0.34 TCGA-GC-A3YS-01 16 28468167 28468167 G T NPIPB7 Missense_Mutation p.P275T 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-GC-A3YS-01 16 28840778 28840778 G A ATXN2L Silent p.V266V 0.09 TCGA-GC-A3YS-01 16 29900017 29900017 G A SEZ6L2 Missense_Mutation p.R295W 0.42 deleterious(0) probably_damaging(0.997) TCGA-GC-A3YS-01 16 30440596 30440596 T C DCTPP1 Intron 0.36 TCGA-GC-A3YS-01 16 3065269 3065269 G C CLDN6 3'UTR 0.34 TCGA-GC-A3YS-01 16 31051055 31051055 G C STX4 Missense_Mutation p.L275F 0.29 tolerated(0.29) benign(0.002) TCGA-GC-A3YS-01 16 75670391 75670391 C T KARS Missense_Mutation p.R176Q 0.14 tolerated(0.09) benign(0.164) TCGA-GC-A3YS-01 16 77356322 77356322 C G ADAMTS18 Missense_Mutation p.E692Q 0.14 deleterious(0) possibly_damaging(0.616) TCGA-GC-A3YS-01 16 81045675 81045675 G A CENPN Missense_Mutation p.R44K 0.10 tolerated(0.3) probably_damaging(0.972) TCGA-GC-A3YS-01 16 88644047 88644047 G C ZC3H18 Missense_Mutation p.Q172H 0.13 tolerated_low_confidence(0.35) unknown(0) TCGA-GC-A3YS-01 16 88870299 88870299 C G CDT1 Missense_Mutation p.I20M 0.20 tolerated(0.11) benign(0.002) TCGA-GC-A3YS-01 16 89952289 89952289 G C TCF25 Missense_Mutation p.E155Q 0.43 tolerated(0.15) benign(0.15) TCGA-GC-A3YS-01 16 9857673 9857673 C A GRIN2A Missense_Mutation p.G1243V 0.57 deleterious(0) probably_damaging(0.989) TCGA-GC-A3YS-01 17 10235464 10235464 G T MYH13 Silent p.L750L 0.10 TCGA-GC-A3YS-01 17 10415489 10415489 G C MYH1 Missense_Mutation p.L390V 0.52 deleterious(0) benign(0.078) TCGA-GC-A3YS-01 17 10542949 10542949 G C MYH3 Silent p.L951L 0.28 TCGA-GC-A3YS-01 17 25967659 25967659 C T LGALS9 Missense_Mutation p.R65W 0.41 deleterious(0.01) probably_damaging(1) TCGA-GC-A3YS-01 17 27000402 27000402 G C SUPT6H 5'UTR 0.17 TCGA-GC-A3YS-01 17 27000441 27000441 G A SUPT6H Missense_Mutation p.E8K 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-GC-A3YS-01 17 27447636 27447636 G C MYO18A Missense_Mutation p.Q576E 0.38 deleterious(0) probably_damaging(0.997) TCGA-GC-A3YS-01 17 28405274 28405274 G A EFCAB5 Missense_Mutation p.E927K 0.26 tolerated(0.05) possibly_damaging(0.831) TCGA-GC-A3YS-01 17 31324480 31324480 C T SPACA3 Missense_Mutation p.L174F 0.35 deleterious(0) probably_damaging(0.977) TCGA-GC-A3YS-01 17 31324482 31324482 C T SPACA3 Silent p.L174L 0.35 TCGA-GC-A3YS-01 17 34869487 34869487 C T MYO19 Missense_Mutation p.E268K 0.16 tolerated(0.05) possibly_damaging(0.527) TCGA-GC-A3YS-01 17 3593444 3593444 C T P2RX5 Silent p.E178E 0.21 TCGA-GC-A3YS-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.40 deleterious(0) probably_damaging(0.994) TCGA-GC-A3YS-01 17 39846027 39846027 C T EIF1 Intron 0.10 TCGA-GC-A3YS-01 17 40939370 40939370 C A WNK4 Silent p.I517I 0.48 TCGA-GC-A3YS-01 17 5009425 5009425 G A ZNF232 Silent p.S343S 0.05 TCGA-GC-A3YS-01 17 556596 556596 C T VPS53 Silent p.V181V 0.08 TCGA-GC-A3YS-01 17 61869830 61869830 G A DDX42 Missense_Mutation p.E94K 0.40 tolerated(0.24) possibly_damaging(0.549) TCGA-GC-A3YS-01 17 66979930 66979930 C T ABCA9 Missense_Mutation p.M1520I 0.21 tolerated(0.84) benign(0.003) TCGA-GC-A3YS-01 17 73924184 73924184 C T FBF1 Missense_Mutation p.E110K 0.11 tolerated(0.2) possibly_damaging(0.542) TCGA-GC-A3YS-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.40 tolerated(0.1) benign(0.438) TCGA-GC-A3YS-01 17 76134203 76134203 C G TMC8 Silent p.L489L 0.36 TCGA-GC-A3YS-01 17 76167089 76167089 C T SYNGR2 Silent p.N97N 0.19 TCGA-GC-A3YS-01 17 76445638 76445638 A T DNAH17 Missense_Mutation p.I3676N 0.25 probably_damaging(0.987) TCGA-GC-A3YS-01 17 78272261 78272261 C A RNF213 Missense_Mutation p.T718N 0.20 possibly_damaging(0.541) TCGA-GC-A3YS-01 17 79414364 79414364 G A RP11-1055B8.7 Missense_Mutation p.E1156K 0.23 benign(0.443) TCGA-GC-A3YS-01 17 8141719 8141719 C G CTC1 Silent p.L142L 0.14 TCGA-GC-A3YS-01 18 19995722 19995722 C T CTAGE1 Missense_Mutation p.G685R 0.37 deleterious(0.03) probably_damaging(1) TCGA-GC-A3YS-01 18 21399954 21399954 C G LAMA3 Nonsense_Mutation p.S766* 0.11 TCGA-GC-A3YS-01 18 2732308 2732308 C G SMCHD1 Missense_Mutation p.P1032A 0.26 deleterious(0) probably_damaging(0.998) TCGA-GC-A3YS-01 18 2732428 2732428 C G SMCHD1 Missense_Mutation p.Q1072E 0.28 tolerated(0.29) benign(0.42) TCGA-GC-A3YS-01 18 33800081 33800081 C T MOCOS Missense_Mutation p.H621Y 0.43 deleterious(0.03) possibly_damaging(0.861) TCGA-GC-A3YS-01 18 74607060 74607060 C G ZNF236 Missense_Mutation p.I501M 0.43 deleterious(0.03) benign(0.247) TCGA-GC-A3YS-01 18 9914267 9914267 C T VAPA Missense_Mutation p.S5L 0.18 tolerated_low_confidence(0.2) benign(0.005) TCGA-GC-A3YS-01 19 10488945 10488945 G A TYK2 Silent p.F46F 0.39 TCGA-GC-A3YS-01 19 10793282 10793282 G A ILF3 Missense_Mutation p.E484K 0.20 tolerated(0.07) benign(0.07) TCGA-GC-A3YS-01 19 10794824 10794824 G A ILF3 Intron 0.30 TCGA-GC-A3YS-01 19 11277202 11277202 C T KANK2 3'UTR 0.10 TCGA-GC-A3YS-01 19 12975882 12975882 C T MAST1 Missense_Mutation p.H510Y 0.10 deleterious(0) probably_damaging(0.966) TCGA-GC-A3YS-01 19 16038102 16038102 G A CYP4F11 Missense_Mutation p.R149W 0.07 deleterious(0) benign(0.431) TCGA-GC-A3YS-01 19 21300143 21300143 G C ZNF714 Missense_Mutation p.E225Q 0.07 deleterious(0.03) possibly_damaging(0.728) TCGA-GC-A3YS-01 19 36128214 36128214 G A RBM42 Silent p.K430K 0.44 TCGA-GC-A3YS-01 19 37916855 37916855 G A ZNF569 Silent p.F51F 0.07 TCGA-GC-A3YS-01 19 3819086 3819086 C T ZFR2 Missense_Mutation p.E630K 0.20 deleterious(0.01) benign(0.133) TCGA-GC-A3YS-01 19 38900652 38900652 G A RASGRP4 3'UTR 0.13 TCGA-GC-A3YS-01 19 4048230 4048230 C T ZBTB7A Silent p.L425L 0.35 TCGA-GC-A3YS-01 19 4054074 4054074 A T ZBTB7A Missense_Mutation p.I386N 0.40 deleterious(0) possibly_damaging(0.618) TCGA-GC-A3YS-01 19 42873014 42873014 G A MEGF8 Silent p.P2100P 0.67 TCGA-GC-A3YS-01 19 43585239 43585239 A T PSG2 Missense_Mutation p.L75H 0.08 tolerated(0.39) benign(0.018) TCGA-GC-A3YS-01 19 46417599 46417599 C T NANOS2 Missense_Mutation p.G118D 0.47 tolerated(0.09) benign(0.041) TCGA-GC-A3YS-01 19 47706939 47706939 C T SAE1 Missense_Mutation p.S297F 0.64 deleterious(0) possibly_damaging(0.77) TCGA-GC-A3YS-01 19 47910626 47910626 G T MEIS3 Silent p.I352I 0.66 TCGA-GC-A3YS-01 19 50154733 50154733 C T SCAF1 Missense_Mutation p.R363W 0.42 unknown(0) TCGA-GC-A3YS-01 19 52507092 52507092 C A ZNF615 5'UTR 0.76 TCGA-GC-A3YS-01 19 52942471 52942471 C A ZNF534 Silent p.V599V 0.31 TCGA-GC-A3YS-01 19 55676784 55676784 C T DNAAF3 Silent p.L160L 0.68 TCGA-GC-A3YS-01 19 56392885 56392885 G C NLRP4 Missense_Mutation p.E973Q 0.59 tolerated(0.1) possibly_damaging(0.737) TCGA-GC-A3YS-01 19 57327167 57327167 A G PEG3 Silent p.P881P 0.17 TCGA-GC-A3YS-01 19 58371262 58371262 C T ZNF587 Silent p.C494C 0.15 TCGA-GC-A3YS-01 19 7682676 7682676 C G CAMSAP3 Silent p.L1188L 0.31 TCGA-GC-A3YS-01 19 9015637 9015637 C G MUC16 Missense_Mutation p.R12729T 0.14 benign(0.18) TCGA-GC-A3YS-01 19 9076183 9076183 G C MUC16 Missense_Mutation p.Q3755E 0.18 unknown(0) TCGA-GC-A3YS-01 1 103461433 103461433 G C COL11A1 Missense_Mutation p.S776C 0.14 unknown(0) TCGA-GC-A3YS-01 1 103468019 103468019 C G COL11A1 Missense_Mutation p.G688R 0.47 unknown(0) TCGA-GC-A3YS-01 1 110031674 110031674 C T ATXN7L2 Missense_Mutation p.T330I 0.76 tolerated(0.08) benign(0.342) TCGA-GC-A3YS-01 1 110766110 110766110 C T KCNC4 Silent p.Y401Y 0.22 TCGA-GC-A3YS-01 1 147095710 147095710 C T BCL9 Silent p.L1077L 0.32 TCGA-GC-A3YS-01 1 153615992 153615992 A G CHTOP Intron 0.76 TCGA-GC-A3YS-01 1 16579618 16579618 G A FBXO42 Silent p.I298I 0.73 TCGA-GC-A3YS-01 1 173881128 173881128 C G SERPINC1 Missense_Mutation p.E145Q 0.27 tolerated(0.17) probably_damaging(0.974) TCGA-GC-A3YS-01 1 202549682 202549682 C G PPP1R12B Silent p.S981S 0.60 TCGA-GC-A3YS-01 1 203798669 203798669 A G ZC3H11A Missense_Mutation p.N130S 0.68 deleterious(0.01) possibly_damaging(0.891) TCGA-GC-A3YS-01 1 214825065 214825065 G C CENPF Missense_Mutation p.E2666Q 0.69 benign(0.046) TCGA-GC-A3YS-01 1 22202880 22202880 C T HSPG2 Missense_Mutation p.E949K 0.20 benign(0.005) TCGA-GC-A3YS-01 1 226055673 226055673 C T TMEM63A Silent p.Q143Q 0.53 TCGA-GC-A3YS-01 1 227842637 227842637 G C ZNF678 Missense_Mutation p.R229T 0.15 tolerated(0.06) benign(0.095) TCGA-GC-A3YS-01 1 228399583 228399583 C T OBSCN Silent p.I33I 0.26 TCGA-GC-A3YS-01 1 232574863 232574863 G C SIPA1L2 Missense_Mutation p.S1341C 0.19 deleterious(0) possibly_damaging(0.886) TCGA-GC-A3YS-01 1 235969730 235969730 G C LYST Silent p.L902L 0.26 TCGA-GC-A3YS-01 1 237794757 237794757 G A RYR2 Silent p.Q2157Q 0.55 TCGA-GC-A3YS-01 1 249142042 249142042 C G ZNF672 Missense_Mutation p.P190R 0.24 deleterious(0.03) possibly_damaging(0.467) TCGA-GC-A3YS-01 1 39799983 39799983 C T MACF1 Intron 0.70 TCGA-GC-A3YS-01 1 39838193 39838193 G A MACF1 Missense_Mutation p.E2318K 0.26 probably_damaging(0.989) TCGA-GC-A3YS-01 1 47767248 47767248 G A STIL Silent p.F146F 0.63 TCGA-GC-A3YS-01 1 47882467 47882467 C T FOXE3 Silent p.F160F 0.64 TCGA-GC-A3YS-01 1 62263087 62263087 A G INADL Silent p.P463P 0.68 TCGA-GC-A3YS-01 1 67666436 67666436 G A IL23R Missense_Mutation p.E170K 0.65 deleterious(0.05) benign(0.017) TCGA-GC-A3YS-01 1 67666498 67666498 G A IL23R Silent p.K190K 0.65 TCGA-GC-A3YS-01 1 78429366 78429366 C T FUBP1 Missense_Mutation p.R359Q 0.37 tolerated(0.16) possibly_damaging(0.49) TCGA-GC-A3YS-01 1 9775949 9775949 A G PIK3CD Missense_Mutation p.D138G 0.17 deleterious(0) benign(0.201) TCGA-GC-A3YS-01 20 17492687 17492687 G C BFSP1 Missense_Mutation p.I187M 0.21 deleterious(0.03) possibly_damaging(0.839) TCGA-GC-A3YS-01 20 24524190 24524190 G A SYNDIG1 Missense_Mutation p.E153K 0.30 deleterious(0.03) benign(0.219) TCGA-GC-A3YS-01 20 36870149 36870149 G C KIAA1755 Silent p.L128L 0.23 TCGA-GC-A3YS-01 20 390664 390664 C T RBCK1 Silent p.D54D 0.36 TCGA-GC-A3YS-01 20 391100 391100 C G RBCK1 Intron 0.22 TCGA-GC-A3YS-01 20 44469998 44469998 G C SNX21 3'UTR 0.30 TCGA-GC-A3YS-01 20 44639945 44639945 C - MMP9 Frame_Shift_Del p.S273Afs*65 0.29 TCGA-GC-A3YS-01 20 44676189 44676189 C G SLC12A5 Missense_Mutation p.I651M 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-GC-A3YS-01 20 44676672 44676672 C G SLC12A5 Missense_Mutation p.R677G 0.18 deleterious(0) probably_damaging(0.971) TCGA-GC-A3YS-01 20 44806753 44806753 C T CDH22 Missense_Mutation p.D583N 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A3YS-01 20 57767194 57767194 G A ZNF831 Missense_Mutation p.E374K 0.32 deleterious(0) possibly_damaging(0.735) TCGA-GC-A3YS-01 20 58513984 58513984 G A PPP1R3D 3'UTR 0.29 TCGA-GC-A3YS-01 20 60511869 60511869 C T CDH4 Silent p.S873S 0.12 TCGA-GC-A3YS-01 20 62121972 62121972 C T EEF1A2 Missense_Mutation p.E297K 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.511) TCGA-GC-A3YS-01 21 31062135 31062135 C A GRIK1 Missense_Mutation p.D153Y 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-GC-A3YS-01 21 36206817 36206817 C A RUNX1 Missense_Mutation p.R232L 0.56 deleterious(0.02) probably_damaging(0.91) TCGA-GC-A3YS-01 21 41465774 41465774 C T DSCAM Missense_Mutation p.D1242N 0.34 deleterious(0.04) probably_damaging(0.979) TCGA-GC-A3YS-01 21 46032821 46032821 C A KRTAP10-8 3'UTR 0.57 TCGA-GC-A3YS-01 21 47809235 47809235 C T PCNT Silent p.L1243L 0.28 TCGA-GC-A3YS-01 22 20970648 20970648 C T SMPD4P1 RNA 0.12 TCGA-GC-A3YS-01 22 24579560 24579560 A T SUSD2 Missense_Mutation p.T129S 0.59 tolerated(0.54) benign(0.011) TCGA-GC-A3YS-01 22 29628275 29628275 G A EMID1 Missense_Mutation p.R236Q 0.53 tolerated(1) benign(0.001) TCGA-GC-A3YS-01 2 100209756 100209756 C G AFF3 Missense_Mutation p.L814F 0.34 deleterious(0.05) benign(0.061) TCGA-GC-A3YS-01 2 108626840 108626840 T C SLC5A7 Silent p.L422L 0.55 TCGA-GC-A3YS-01 2 128253576 128253576 C G IWS1 Missense_Mutation p.E572Q 0.58 deleterious(0) possibly_damaging(0.57) TCGA-GC-A3YS-01 2 168100730 168100730 G C XIRP2 Missense_Mutation p.G943A 0.46 probably_damaging(0.981) TCGA-GC-A3YS-01 2 171356164 171356164 C G MYO3B Silent p.L1045L 0.14 TCGA-GC-A3YS-01 2 206869542 206869542 C T INO80D Silent p.V878V 0.38 TCGA-GC-A3YS-01 2 218925481 218925481 G A CXCR2P1 RNA 0.61 TCGA-GC-A3YS-01 2 234079249 234079249 C T INPP5D Silent p.F621F 0.46 TCGA-GC-A3YS-01 2 235404605 235404605 C T ARL4C 3'UTR 0.10 TCGA-GC-A3YS-01 2 238277740 238277740 G A COL6A3 Nonsense_Mutation p.R1456* 0.57 TCGA-GC-A3YS-01 2 37579929 37579929 C T QPCT Intron 0.63 TCGA-GC-A3YS-01 2 43452168 43452168 T C ZFP36L2 Missense_Mutation p.S259G 0.32 deleterious(0) possibly_damaging(0.483) TCGA-GC-A3YS-01 2 73993695 73993695 G C DUSP11 Nonsense_Mutation p.S262* 0.63 TCGA-GC-A3YS-01 2 79364352 79364352 C T REG1P Intron 0.54 TCGA-GC-A3YS-01 2 84670479 84670479 C T SUCLG1 Missense_Mutation p.V83I 0.62 deleterious_low_confidence(0.03) possibly_damaging(0.836) TCGA-GC-A3YS-01 2 89292027 89292027 G A IGKV1-8 Silent p.F82F 0.55 TCGA-GC-A3YS-01 3 100105732 100105732 C T TOMM70A Missense_Mutation p.E139K 0.18 tolerated(0.49) possibly_damaging(0.56) TCGA-GC-A3YS-01 3 102196559 102196559 C T ZPLD1 3'UTR 0.22 TCGA-GC-A3YS-01 3 119134233 119134233 G C ARHGAP31 Missense_Mutation p.D1153H 0.16 deleterious(0.03) possibly_damaging(0.868) TCGA-GC-A3YS-01 3 142403175 142403175 G T PLS1 Missense_Mutation p.V276L 0.51 deleterious(0.05) probably_damaging(0.996) TCGA-GC-A3YS-01 3 142841303 142841303 C T CHST2 3'UTR 0.27 TCGA-GC-A3YS-01 3 151112453 151112453 G C MED12L Missense_Mutation p.R1838T 0.20 deleterious(0.04) benign(0.412) TCGA-GC-A3YS-01 3 17051752 17051752 C T PLCL2 Missense_Mutation p.T179M 0.26 tolerated(0.09) benign(0.416) TCGA-GC-A3YS-01 3 187419823 187419823 C T RTP2 Missense_Mutation p.D32N 0.18 deleterious(0) probably_damaging(0.971) TCGA-GC-A3YS-01 3 196612107 196612107 G C SENP5 Missense_Mutation p.E19Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-GC-A3YS-01 3 35786031 35786031 G - ARPP21 Intron 0.22 TCGA-GC-A3YS-01 3 42679721 42679721 G C NKTR Missense_Mutation p.R842T 0.23 deleterious_low_confidence(0.03) probably_damaging(0.95) TCGA-GC-A3YS-01 3 49698687 49698687 G A BSN Missense_Mutation p.D3137N 0.27 unknown(0) TCGA-GC-A3YS-01 3 49770248 49770248 C T IP6K1 Missense_Mutation p.E198K 0.28 tolerated(0.3) benign(0.318) TCGA-GC-A3YS-01 3 64607948 64607948 G A ADAMTS9 Missense_Mutation p.P871L 0.27 deleterious(0) probably_damaging(0.995) TCGA-GC-A3YS-01 3 9743746 9743746 C T MTMR14 3'UTR 0.08 TCGA-GC-A3YS-01 4 114251565 114251565 G A ANK2 Missense_Mutation p.E1022K 0.68 probably_damaging(0.999) TCGA-GC-A3YS-01 4 148406959 148406959 C A EDNRA Silent p.G42G 0.16 TCGA-GC-A3YS-01 4 160279298 160279298 G C RAPGEF2 3'UTR 0.27 TCGA-GC-A3YS-01 4 2733735 2733735 G A FAM193A 3'UTR 0.16 TCGA-GC-A3YS-01 4 41668680 41668680 C G LIMCH1 Missense_Mutation p.Q747E 0.17 tolerated(0.21) benign(0.387) TCGA-GC-A3YS-01 4 46099350 46099350 C T GABRG1 Missense_Mutation p.D41N 0.49 tolerated(0.06) benign(0.321) TCGA-GC-A3YS-01 4 82126175 82126175 T C PRKG2 Silent p.K9K 0.20 TCGA-GC-A3YS-01 5 133724024 133724024 G T UBE2B Missense_Mutation p.D84Y 0.31 deleterious(0) possibly_damaging(0.531) TCGA-GC-A3YS-01 5 140348520 140348520 C T PCDHAC2 Silent p.I723I 0.14 TCGA-GC-A3YS-01 5 140348753 140348753 C T PCDHAC2 Missense_Mutation p.S801L 0.34 deleterious(0.05) benign(0.433) TCGA-GC-A3YS-01 5 14488979 14488979 C T TRIO Intron 0.14 TCGA-GC-A3YS-01 5 150080509 150080509 C G RBM22 Missense_Mutation p.Q13H 0.50 deleterious(0.01) benign(0.064) TCGA-GC-A3YS-01 5 150515861 150515861 C - ANXA6 Frame_Shift_Del p.D149Tfs*23 0.33 TCGA-GC-A3YS-01 5 174156555 174156555 C T MSX2 Missense_Mutation p.P258L 0.29 deleterious(0.04) possibly_damaging(0.796) TCGA-GC-A3YS-01 5 1801637 1801637 G A NDUFS6 Missense_Mutation p.G36R 0.48 tolerated(0.08) benign(0.181) TCGA-GC-A3YS-01 5 24509787 24509787 G C CDH10 Missense_Mutation p.P382A 0.12 deleterious(0) probably_damaging(0.971) TCGA-GC-A3YS-01 5 33614470 33614470 C G ADAMTS12 Missense_Mutation p.Q800H 0.07 deleterious(0) probably_damaging(0.988) TCGA-GC-A3YS-01 5 35910153 35910153 C G CAPSL Missense_Mutation p.E114Q 0.27 tolerated(0.54) benign(0.026) TCGA-GC-A3YS-01 5 38435313 38435313 G C EGFLAM Missense_Mutation p.K747N 0.20 tolerated(0.13) benign(0.084) TCGA-GC-A3YS-01 5 43122240 43122240 G C ZNF131 Missense_Mutation p.E29Q 0.51 tolerated(1) benign(0.187) TCGA-GC-A3YS-01 5 464494 464494 C T EXOC3 Silent p.N581N 0.08 TCGA-GC-A3YS-01 5 74877153 74877153 G A POLK Missense_Mutation p.E272K 0.37 tolerated(0.1) benign(0.071) TCGA-GC-A3YS-01 5 74892196 74892196 G A POLK Missense_Mutation p.E560K 0.51 tolerated(0.1) benign(0.005) TCGA-GC-A3YS-01 5 74970365 74970365 C A POC5 Silent p.R541R 0.53 TCGA-GC-A3YS-01 5 7520895 7520895 G A ADCY2 Silent p.L151L 0.17 TCGA-GC-A3YS-01 5 80640791 80640791 G A ACOT12 Silent p.I281I 0.48 TCGA-GC-A3YS-01 6 101214503 101214503 T C ASCC3 Missense_Mutation p.I559V 0.36 tolerated(0.33) benign(0.027) TCGA-GC-A3YS-01 6 102483434 102483434 T C GRIK2 Silent p.T768T 0.26 TCGA-GC-A3YS-01 6 149867087 149867087 C T PPIL4 Missense_Mutation p.E19K 0.36 tolerated(0.43) benign(0.051) TCGA-GC-A3YS-01 6 151646950 151646950 A G AKAP12 Intron 0.25 TCGA-GC-A3YS-01 6 152686043 152686043 G A SYNE1 Nonsense_Mutation p.Q3362* 0.28 TCGA-GC-A3YS-01 6 15452374 15452374 C T JARID2 Missense_Mutation p.T154I 0.29 deleterious(0) probably_damaging(0.974) TCGA-GC-A3YS-01 6 25918715 25918715 C T SLC17A2 Missense_Mutation p.G217S 0.15 deleterious(0.03) possibly_damaging(0.775) TCGA-GC-A3YS-01 6 30698322 30698322 G C FLOT1 Silent p.A324A 0.09 TCGA-GC-A3YS-01 6 30884992 30884992 G A VARS2 Silent p.S318S 0.46 TCGA-GC-A3YS-01 6 30889068 30889068 G C VARS2 Missense_Mutation p.E570Q 0.28 tolerated(0.58) benign(0.009) TCGA-GC-A3YS-01 6 31513918 31513918 G A ATP6V1G2 Nonsense_Mutation p.R51* 0.31 TCGA-GC-A3YS-01 6 31601375 31601375 G A PRRC2A Silent p.R1513R 0.21 TCGA-GC-A3YS-01 6 31795634 31795634 C A HSPA1B 5'UTR 0.24 TCGA-GC-A3YS-01 6 33170334 33170334 C T SLC39A7 Intron 0.27 TCGA-GC-A3YS-01 6 46620303 46620303 G T CYP39A1 Missense_Mutation p.P6Q 0.25 deleterious(0.01) possibly_damaging(0.802) TCGA-GC-A3YS-01 6 66044988 66044988 G A EYS Missense_Mutation p.R551W 0.13 tolerated(0.2) benign(0) TCGA-GC-A3YS-01 6 8417151 8417151 C G SLC35B3 Missense_Mutation p.L317F 0.41 deleterious(0) probably_damaging(0.998) TCGA-GC-A3YS-01 6 89388140 89388140 T C RNGTT Splice_Site p.X480_splice 0.42 TCGA-GC-A3YS-01 7 100491073 100491073 C T ACHE Missense_Mutation p.G261S 0.20 deleterious(0) probably_damaging(1) TCGA-GC-A3YS-01 7 107114751 107114751 G T GPR22 Missense_Mutation p.M82I 0.38 tolerated(0.07) benign(0.202) TCGA-GC-A3YS-01 7 116869839 116869839 C G ST7 Missense_Mutation p.L454V 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-GC-A3YS-01 7 127255581 127255581 G A PAX4 5'UTR 0.10 TCGA-GC-A3YS-01 7 128038653 128038653 C T IMPDH1 Missense_Mutation p.V297I 0.06 tolerated(0.1) possibly_damaging(0.895) TCGA-GC-A3YS-01 7 142983872 142983872 C T TMEM139 Missense_Mutation p.H201Y 0.50 tolerated(0.25) benign(0.002) TCGA-GC-A3YS-01 7 143573631 143573631 G A FAM115A Missense_Mutation p.A24V 0.06 tolerated(0.5) benign(0.06) TCGA-GC-A3YS-01 7 21611533 21611533 T C DNAH11 Missense_Mutation p.M512T 0.59 benign(0.001) TCGA-GC-A3YS-01 7 2188842 2188842 C G MAD1L1 Missense_Mutation p.E340Q 0.24 tolerated(0.39) benign(0.042) TCGA-GC-A3YS-01 7 21940526 21940526 A C CDCA7L 3'UTR 0.10 TCGA-GC-A3YS-01 7 36438775 36438775 C T ANLN Missense_Mutation p.P87L 0.21 deleterious(0) probably_damaging(0.998) TCGA-GC-A3YS-01 7 44156568 44156568 C T POLD2 Missense_Mutation p.E210K 0.34 tolerated(0.21) benign(0.148) TCGA-GC-A3YS-01 7 66463173 66463173 C G TYW1 Missense_Mutation p.I42M 0.24 tolerated_low_confidence(0.2) benign(0.007) TCGA-GC-A3YS-01 7 72892759 72892759 C T BAZ1B Silent p.K344K 0.28 TCGA-GC-A3YS-01 7 76239387 76239387 C T POMZP3 3'UTR 0.22 TCGA-GC-A3YS-01 7 80301235 80301235 C T CD36 Intron 0.51 TCGA-GC-A3YS-01 7 80418743 80418743 G C SEMA3C Missense_Mutation p.I411M 0.46 deleterious(0) possibly_damaging(0.699) TCGA-GC-A3YS-01 7 97944889 97944889 G T BAIAP2L1 Silent p.I174I 0.22 TCGA-GC-A3YS-01 7 98645380 98645380 C A SMURF1 Missense_Mutation p.R386I 0.21 deleterious(0) probably_damaging(0.927) TCGA-GC-A3YS-01 7 98645441 98645441 C A SMURF1 Missense_Mutation p.D366Y 0.19 deleterious(0) benign(0.139) TCGA-GC-A3YS-01 7 99621898 99621898 C T ZKSCAN1 Missense_Mutation p.S183L 0.23 tolerated(0.12) benign(0.025) TCGA-GC-A3YS-01 8 101154324 101154324 G A FBXO43 Missense_Mutation p.S53F 0.70 deleterious(0.05) benign(0.012) TCGA-GC-A3YS-01 8 11405588 11405588 C A BLK Silent p.R75R 0.37 TCGA-GC-A3YS-01 8 120770342 120770342 C T TAF2 Missense_Mutation p.M913I 0.10 tolerated(0.45) benign(0.001) TCGA-GC-A3YS-01 8 124371897 124371897 C T ATAD2 Missense_Mutation p.E396K 0.08 deleterious(0) benign(0.339) TCGA-GC-A3YS-01 8 139380157 139380157 G C FAM135B Missense_Mutation p.Q24E 0.61 deleterious(0) benign(0.046) TCGA-GC-A3YS-01 8 144803252 144803252 G C MAPK15 Missense_Mutation p.E334Q 0.12 tolerated(0.2) benign(0.327) TCGA-GC-A3YS-01 8 30933803 30933803 G A WRN Missense_Mutation p.R280K 0.48 deleterious(0.03) possibly_damaging(0.844) TCGA-GC-A3YS-01 8 36644853 36644853 G A KCNU1 Silent p.R75R 0.28 TCGA-GC-A3YS-01 8 38677879 38677879 C T TACC1 Nonsense_Mutation p.R373* 0.13 TCGA-GC-A3YS-01 8 48740729 48740729 C T PRKDC Silent p.Q2858Q 0.58 TCGA-GC-A3YS-01 8 49637345 49637345 C T EFCAB1 Missense_Mutation p.E198K 0.62 tolerated(0.06) benign(0.05) TCGA-GC-A3YS-01 8 59506850 59506850 C G NSMAF Splice_Site p.X662_splice 0.08 TCGA-GC-A3YS-01 8 67525202 67525202 G A MYBL1 5'UTR 0.21 TCGA-GC-A3YS-01 8 69358639 69358639 C G C8orf34 Nonsense_Mutation p.S184* 0.07 TCGA-GC-A3YS-01 8 77764196 77764196 C G ZFHX4 Missense_Mutation p.S1680C 0.63 benign(0.04) TCGA-GC-A3YS-01 9 100617151 100617151 G C FOXE1 Missense_Mutation p.E319Q 0.77 tolerated(0.12) possibly_damaging(0.727) TCGA-GC-A3YS-01 9 100667150 100667150 G C C9orf156 Missense_Mutation p.F397L 0.49 deleterious(0) probably_damaging(0.999) TCGA-GC-A3YS-01 9 103348801 103348801 G A MURC 3'UTR 0.35 TCGA-GC-A3YS-01 9 107332253 107332253 G A OR13C8 Missense_Mutation p.D269N 0.32 tolerated(0.16) benign(0.004) TCGA-GC-A3YS-01 9 13119644 13119644 C T MPDZ Missense_Mutation p.D1746N 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-GC-A3YS-01 9 140250821 140250821 C G EXD3 Splice_Site p.X219_splice 0.43 TCGA-GC-A3YS-01 9 35094274 35094274 G T PIGO Silent p.S198S 0.36 TCGA-GC-A3YS-01 9 35094283 35094283 G T PIGO Missense_Mutation p.F195L 0.35 tolerated(0.36) probably_damaging(0.932) TCGA-GC-A3YS-01 9 35094310 35094310 G A PIGO Silent p.F186F 0.45 TCGA-GC-A3YS-01 9 35735135 35735135 G C CREB3 Silent p.R155R 0.51 TCGA-GC-A3YS-01 9 85613323 85613323 C G RASEF Missense_Mutation p.E588Q 0.68 tolerated(0.07) probably_damaging(0.997) TCGA-GC-A3YS-01 X 119760538 119760538 C T C1GALT1C1 Missense_Mutation p.D162N 0.37 tolerated(0.22) benign(0.307) TCGA-GC-A3YS-01 X 141291225 141291225 C G MAGEC2 Missense_Mutation p.K183N 0.60 deleterious(0.05) benign(0.079) TCGA-GC-A3YS-01 X 154736681 154736681 G A TMLHE Silent p.L291L 0.65 TCGA-GC-A3YS-01 X 41333009 41333009 C G NYX Missense_Mutation p.I101M 0.25 deleterious(0.01) probably_damaging(1) TCGA-GC-A3YS-01 X 46433799 46433799 G A CHST7 Missense_Mutation p.D145N 0.69 tolerated(0.08) benign(0.125) TCGA-GC-A3YS-01 X 54578731 54578731 G C GNL3L Missense_Mutation p.K396N 0.23 deleterious(0) probably_damaging(0.997) TCGA-GC-A3YS-01 X 74494400 74494400 G A UPRT Missense_Mutation p.R104Q 0.36 tolerated(0.9) benign(0.002) TCGA-GC-A4ZW-01 10 101715102 101715102 C G DNMBP Missense_Mutation p.R710T 0.16 deleterious(0.04) benign(0.066) TCGA-GC-A4ZW-01 10 103909051 103909051 G A PPRC1 Missense_Mutation p.R1619Q 0.13 deleterious(0.02) benign(0.238) TCGA-GC-A4ZW-01 10 104389838 104389838 G C SUFU Missense_Mutation p.E461Q 0.20 tolerated(0.09) benign(0.085) TCGA-GC-A4ZW-01 10 114169397 114169397 G C ACSL5 Missense_Mutation p.R278T 0.18 tolerated(0.05) benign(0.233) TCGA-GC-A4ZW-01 10 1149646 1149646 C T WDR37 Silent p.L277L 0.16 TCGA-GC-A4ZW-01 10 115609547 115609547 T C DCLRE1A Silent p.Q439Q 0.22 TCGA-GC-A4ZW-01 10 12046574 12046574 C - UPF2 Frame_Shift_Del p.E487Kfs*39 0.28 TCGA-GC-A4ZW-01 10 121596468 121596468 C G MCMBP Missense_Mutation p.Q496H 0.25 deleterious(0.02) benign(0.012) TCGA-GC-A4ZW-01 10 123846997 123846997 G C TACC2 Missense_Mutation p.R1661T 0.21 benign(0.01) TCGA-GC-A4ZW-01 10 134145077 134145077 C G LRRC27 5'Flank 0.08 TCGA-GC-A4ZW-01 10 15145350 15145350 C T RPP38 Missense_Mutation p.L13F 0.09 deleterious(0.01) benign(0.035) TCGA-GC-A4ZW-01 10 16979687 16979687 G C CUBN Missense_Mutation p.H1944D 0.12 deleterious(0.01) benign(0.158) TCGA-GC-A4ZW-01 10 17199512 17199512 G C TRDMT1 Nonsense_Mutation p.S272* 0.09 TCGA-GC-A4ZW-01 10 17891612 17891612 C T MRC1L1 Nonsense_Mutation p.Q365* 0.62 TCGA-GC-A4ZW-01 10 18266856 18266856 C T SLC39A12 Silent p.L259L 0.27 TCGA-GC-A4ZW-01 10 22830962 22830962 C T PIP4K2A Silent p.L269L 0.17 TCGA-GC-A4ZW-01 10 26790038 26790038 C T APBB1IP Nonsense_Mutation p.Q151* 0.11 TCGA-GC-A4ZW-01 10 30739212 30739212 C G MAP3K8 Missense_Mutation p.S177C 0.18 deleterious(0.01) possibly_damaging(0.823) TCGA-GC-A4ZW-01 10 32324595 32324595 T C KIF5B Missense_Mutation p.T273A 0.26 tolerated(0.17) benign(0) TCGA-GC-A4ZW-01 10 33481334 33481334 T C NRP1 Missense_Mutation p.Y646C 0.13 tolerated(0.15) possibly_damaging(0.497) TCGA-GC-A4ZW-01 10 35842101 35842101 C T CCNY Missense_Mutation p.T245M 0.24 deleterious(0) possibly_damaging(0.756) TCGA-GC-A4ZW-01 10 46135270 46135270 G A ZFAND4 Silent p.S237S 0.16 TCGA-GC-A4ZW-01 10 50668430 50668430 C G ERCC6 Missense_Mutation p.E1351Q 0.26 tolerated(0.1) benign(0.022) TCGA-GC-A4ZW-01 10 50684332 50684332 C G ERCC6 Missense_Mutation p.E771Q 0.21 deleterious(0.03) benign(0.309) TCGA-GC-A4ZW-01 10 53458175 53458175 C T CSTF2T Missense_Mutation p.E379K 0.11 deleterious(0.01) benign(0.152) TCGA-GC-A4ZW-01 10 55569282 55569283 - T PCDH15 Frame_Shift_Ins p.P444Tfs*4 0.12 TCGA-GC-A4ZW-01 10 5979256 5979256 C T FBXO18 3'UTR 0.19 TCGA-GC-A4ZW-01 10 6104202 6104202 C T IL2RA 5'UTR 0.24 TCGA-GC-A4ZW-01 10 69881230 69881230 T C MYPN Missense_Mutation p.I12T 0.43 deleterious(0) probably_damaging(0.918) TCGA-GC-A4ZW-01 10 75003155 75003155 C G DNAJC9 3'UTR 0.14 TCGA-GC-A4ZW-01 10 75289523 75289523 C G USP54 Missense_Mutation p.E659Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-GC-A4ZW-01 10 75936625 75936625 G C ADK Intron 0.26 TCGA-GC-A4ZW-01 10 76803618 76803618 C G DUPD1 Missense_Mutation p.D120H 0.14 deleterious(0.02) probably_damaging(0.952) TCGA-GC-A4ZW-01 10 79777409 79777409 C G POLR3A Missense_Mutation p.R452T 0.12 deleterious(0) probably_damaging(0.992) TCGA-GC-A4ZW-01 10 85955320 85955320 C G CDHR1 Missense_Mutation p.F42L 0.36 tolerated(0.38) benign(0.03) TCGA-GC-A4ZW-01 10 93601993 93601993 G A TNKS2 Missense_Mutation p.G635E 0.17 deleterious(0.03) probably_damaging(0.972) TCGA-GC-A4ZW-01 10 98105839 98105839 C T OPALIN Silent p.T95T 0.26 TCGA-GC-A4ZW-01 11 10823243 10823243 G A EIF4G2 Missense_Mutation p.R460W 0.11 deleterious(0) probably_damaging(0.953) TCGA-GC-A4ZW-01 11 1085942 1085942 G A MUC2 Missense_Mutation p.E928K 0.13 probably_damaging(0.982) TCGA-GC-A4ZW-01 11 108811112 108811112 G A DDX10 Missense_Mutation p.E864K 0.20 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 11 112088558 112088558 G A BCO2 Silent p.Q567Q 0.11 TCGA-GC-A4ZW-01 11 119983167 119983167 G C TRIM29 Missense_Mutation p.F574L 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GC-A4ZW-01 11 120996092 120996092 G A TECTA Missense_Mutation p.V429M 0.85 deleterious(0) benign(0.166) TCGA-GC-A4ZW-01 11 123909178 123909178 G A OR10G7 Silent p.F177F 0.09 TCGA-GC-A4ZW-01 11 124767650 124767650 G A ROBO4 Silent p.S14S 0.22 TCGA-GC-A4ZW-01 11 125880363 125880363 G A CDON Silent p.F475F 0.31 TCGA-GC-A4ZW-01 11 128781336 128781336 G C KCNJ5 Missense_Mutation p.K56N 0.10 deleterious(0) probably_damaging(0.988) TCGA-GC-A4ZW-01 11 18112015 18112015 C G SAAL1 Missense_Mutation p.D147H 0.22 deleterious(0.01) probably_damaging(0.946) TCGA-GC-A4ZW-01 11 2417879 2417879 G A CD81 Missense_Mutation p.D195N 0.13 tolerated(0.14) benign(0.024) TCGA-GC-A4ZW-01 11 32997904 32997904 G T QSER1 Nonsense_Mutation p.E1698* 0.23 TCGA-GC-A4ZW-01 11 3380393 3380393 G A ZNF195 Silent p.F615F 0.12 TCGA-GC-A4ZW-01 11 3380608 3380608 G A ZNF195 Missense_Mutation p.H544Y 0.23 deleterious(0.02) probably_damaging(0.917) TCGA-GC-A4ZW-01 11 3381144 3381144 G A ZNF195 Missense_Mutation p.S365F 0.08 tolerated(0.7) probably_damaging(0.962) TCGA-GC-A4ZW-01 11 34999705 34999705 C G PDHX Missense_Mutation p.I333M 0.17 deleterious(0) probably_damaging(0.997) TCGA-GC-A4ZW-01 11 430334 430334 C T ANO9 Silent p.P203P 0.08 TCGA-GC-A4ZW-01 11 55135640 55135640 T C OR4A15 Missense_Mutation p.L94S 0.88 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-GC-A4ZW-01 11 5537467 5537467 G T UBQLNL Missense_Mutation p.Q69K 0.11 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 11 55653185 55653185 G A TRIM51 Missense_Mutation p.G94E 0.79 tolerated(0.17) possibly_damaging(0.521) TCGA-GC-A4ZW-01 11 55873361 55873361 G A OR8H2 Silent p.V281V 0.34 TCGA-GC-A4ZW-01 11 60670952 60670952 C T PRPF19 Silent p.L75L 0.69 TCGA-GC-A4ZW-01 11 61557389 61557389 C T TMEM258 Missense_Mutation p.E40K 0.50 tolerated(0.11) benign(0.116) TCGA-GC-A4ZW-01 11 6245010 6245010 C G FAM160A2 Missense_Mutation p.E203Q 0.12 deleterious(0.03) possibly_damaging(0.677) TCGA-GC-A4ZW-01 11 71747019 71747019 C T NUMA1 Intron 0.83 TCGA-GC-A4ZW-01 11 74915639 74915639 C T SLCO2B1 3'UTR 0.89 TCGA-GC-A4ZW-01 11 88027538 88027538 G C CTSC Missense_Mutation p.S343C 0.14 deleterious(0) probably_damaging(0.909) TCGA-GC-A4ZW-01 11 92533540 92533540 C G FAT3 Missense_Mutation p.S2454C 0.14 probably_damaging(1) TCGA-GC-A4ZW-01 11 94924585 94924585 G C SESN3 Missense_Mutation p.H109D 0.39 deleterious(0) probably_damaging(0.997) TCGA-GC-A4ZW-01 12 101727211 101727211 G - UTP20 Frame_Shift_Del p.V1184Ffs*20 0.15 TCGA-GC-A4ZW-01 12 1022458 1022458 G C RAD52 3'UTR 0.24 TCGA-GC-A4ZW-01 12 104151979 104151979 G A STAB2 Missense_Mutation p.R2340Q 0.26 tolerated(0.1) benign(0.18) TCGA-GC-A4ZW-01 12 104155096 104155096 G A STAB2 Missense_Mutation p.D2423N 0.22 tolerated(0.86) benign(0.042) TCGA-GC-A4ZW-01 12 109684179 109684179 G A ACACB Missense_Mutation p.A1833T 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A4ZW-01 12 11339214 11339214 C G TAS2R42 Missense_Mutation p.K110N 0.19 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 12 113715044 113715044 G C TPCN1 Splice_Site p.X426_splice 0.35 TCGA-GC-A4ZW-01 12 114364977 114364977 G A RBM19 Missense_Mutation p.S709F 0.50 deleterious(0.02) benign(0.332) TCGA-GC-A4ZW-01 12 115114179 115114179 G C TBX3 Missense_Mutation p.F346L 0.22 tolerated(0.58) benign(0.042) TCGA-GC-A4ZW-01 12 117014067 117014067 G C MAP1LC3B2 Missense_Mutation p.G107A 0.17 deleterious(0) probably_damaging(0.98) TCGA-GC-A4ZW-01 12 120575467 120575467 G A GCN1L1 Missense_Mutation p.S2182L 0.24 benign(0.013) TCGA-GC-A4ZW-01 12 120750384 120750384 C G SIRT4 Nonsense_Mutation p.S208* 0.15 TCGA-GC-A4ZW-01 12 120750440 120750440 C G SIRT4 Missense_Mutation p.L227V 0.16 deleterious(0.01) probably_damaging(0.941) TCGA-GC-A4ZW-01 12 120750799 120750799 C G SIRT4 Missense_Mutation p.S302C 0.22 deleterious(0.01) benign(0.008) TCGA-GC-A4ZW-01 12 120966824 120966824 G A COQ5 Missense_Mutation p.R41W 0.14 deleterious(0.02) probably_damaging(0.928) TCGA-GC-A4ZW-01 12 125619370 125619370 G T AACS Silent p.R550R 0.45 TCGA-GC-A4ZW-01 12 133434034 133434034 G A CHFR Silent p.H353H 0.29 TCGA-GC-A4ZW-01 12 18891316 18891316 C A CAPZA3 Silent p.I38I 0.09 TCGA-GC-A4ZW-01 12 21391936 21391936 C G SLCO1B1 Nonsense_Mutation p.S630* 0.21 TCGA-GC-A4ZW-01 12 23757462 23757462 T G SOX5 Missense_Mutation p.L341F 0.51 deleterious(0.01) benign(0.043) TCGA-GC-A4ZW-01 12 27877103 27877103 G A MRPS35 Missense_Mutation p.R169Q 0.56 deleterious(0.01) probably_damaging(1) TCGA-GC-A4ZW-01 12 3048628 3048628 G C TULP3 Intron 0.13 TCGA-GC-A4ZW-01 12 40692119 40692119 G C LRRK2 Missense_Mutation p.M1057I 0.19 tolerated(0.13) benign(0.011) TCGA-GC-A4ZW-01 12 40753223 40753223 C T LRRK2 Silent p.L2335L 0.28 TCGA-GC-A4ZW-01 12 42858770 42858770 G A PRICKLE1 Silent p.L356L 0.19 TCGA-GC-A4ZW-01 12 44139956 44139956 G C PUS7L Missense_Mutation p.Q386E 0.17 tolerated(0.1) benign(0.241) TCGA-GC-A4ZW-01 12 46757588 46757588 C T SLC38A2 Missense_Mutation p.M325I 0.24 deleterious(0.01) benign(0.063) TCGA-GC-A4ZW-01 12 49314836 49314836 C G CCDC65 Missense_Mutation p.L384V 0.51 tolerated(0.55) benign(0.062) TCGA-GC-A4ZW-01 12 49951246 49951246 C T KCNH3 Missense_Mutation p.A921V 0.16 tolerated(0.55) benign(0.008) TCGA-GC-A4ZW-01 12 50344664 50344664 C G AQP2 Missense_Mutation p.F17L 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-GC-A4ZW-01 12 51442260 51442260 C T LETMD1 Missense_Mutation p.R41W 0.16 deleterious(0.04) benign(0.009) TCGA-GC-A4ZW-01 12 52681073 52681073 C G KRT81 Missense_Mutation p.E354Q 0.12 deleterious(0) probably_damaging(0.955) TCGA-GC-A4ZW-01 12 53045890 53045890 C T KRT2 Missense_Mutation p.G13R 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-GC-A4ZW-01 12 53680236 53680236 C G ESPL1 Nonsense_Mutation p.S1239* 0.19 TCGA-GC-A4ZW-01 12 54914556 54914556 C T NCKAP1L Silent p.F568F 0.19 TCGA-GC-A4ZW-01 12 56500496 56500496 G A RP11-603J24.9 Silent p.K52K 0.27 TCGA-GC-A4ZW-01 12 56522463 56522464 - T ESYT1 Frame_Shift_Ins p.Y121Lfs*20 0.14 TCGA-GC-A4ZW-01 12 56823961 56823961 C G TIMELESS Silent p.V338V 0.19 TCGA-GC-A4ZW-01 12 57351026 57351026 G A RDH16 Missense_Mutation p.S74L 0.40 deleterious(0.01) probably_damaging(0.942) TCGA-GC-A4ZW-01 12 57351290 57351290 G C RDH16 5'UTR 0.52 TCGA-GC-A4ZW-01 12 58002400 58002400 G T DTX3 Missense_Mutation p.R283L 0.50 deleterious(0.03) benign(0.201) TCGA-GC-A4ZW-01 12 58203621 58203621 G C AVIL Missense_Mutation p.L272V 0.41 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 12 64488982 64488982 G A SRGAP1 Missense_Mutation p.R559K 0.08 tolerated(0.05) possibly_damaging(0.531) TCGA-GC-A4ZW-01 12 64615894 64615894 C G C12orf66 Missense_Mutation p.E42Q 0.57 deleterious(0.02) possibly_damaging(0.81) TCGA-GC-A4ZW-01 12 7254627 7254627 C T C1RL Silent p.L119L 0.28 TCGA-GC-A4ZW-01 12 77426843 77426843 C G E2F7 Missense_Mutation p.E457Q 0.19 deleterious(0.01) possibly_damaging(0.588) TCGA-GC-A4ZW-01 12 80191151 80191151 C G PPP1R12A Missense_Mutation p.E706Q 0.67 deleterious(0) probably_damaging(0.995) TCGA-GC-A4ZW-01 12 83526167 83526167 G A TMTC2 Silent p.%3D 0.26 TCGA-GC-A4ZW-01 12 86268232 86268232 C T NTS Silent p.F17F 0.22 TCGA-GC-A4ZW-01 12 94562964 94562964 C T PLXNC1 Silent p.I366I 0.22 TCGA-GC-A4ZW-01 12 977510 977510 C G WNK1 Intron 0.15 TCGA-GC-A4ZW-01 13 101257346 101257346 C T TMTC4 Missense_Mutation p.E729K 0.05 tolerated(0.85) benign(0.051) TCGA-GC-A4ZW-01 13 101733989 101733989 C T NALCN Missense_Mutation p.M1258I 0.15 tolerated(0.16) benign(0.241) TCGA-GC-A4ZW-01 13 109318269 109318269 G C MYO16 5'UTR 0.12 TCGA-GC-A4ZW-01 13 110435641 110435641 G A IRS2 Silent p.I920I 0.18 TCGA-GC-A4ZW-01 13 111287865 111287865 C T CARKD Silent p.L234L 0.11 TCGA-GC-A4ZW-01 13 113980277 113980277 G A GRTP1 Missense_Mutation p.S231F 0.11 deleterious(0) probably_damaging(0.973) TCGA-GC-A4ZW-01 13 21549297 21549297 G C LATS2 Missense_Mutation p.I993M 0.09 deleterious(0) probably_damaging(0.995) TCGA-GC-A4ZW-01 13 23905258 23905258 G C SACS Missense_Mutation p.Q4253E 0.12 benign(0.009) TCGA-GC-A4ZW-01 13 23905880 23905880 C G SACS Missense_Mutation p.L4045F 0.11 probably_damaging(0.994) TCGA-GC-A4ZW-01 13 23913171 23913171 G A SACS Missense_Mutation p.P1615L 0.32 probably_damaging(0.999) TCGA-GC-A4ZW-01 13 25419151 25419151 G C RNF17 Missense_Mutation p.R1012T 0.24 deleterious(0) probably_damaging(0.966) TCGA-GC-A4ZW-01 13 30805601 30805601 C T KATNAL1 Silent p.L245L 0.84 TCGA-GC-A4ZW-01 13 33692253 33692253 C G STARD13 Missense_Mutation p.E744Q 0.12 deleterious(0.01) probably_damaging(0.938) TCGA-GC-A4ZW-01 13 43544788 43544788 C G EPSTI1 Missense_Mutation p.L69F 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-GC-A4ZW-01 13 45563717 45563717 C G GPALPP1 5'Flank 0.19 TCGA-GC-A4ZW-01 13 47011880 47011880 C T PPP1R2P4 RNA 0.25 TCGA-GC-A4ZW-01 13 48881429 48881429 G T RB1 Nonsense_Mutation p.E51* 0.21 TCGA-GC-A4ZW-01 13 49027133 49027133 C T RB1 Missense_Mutation p.S567L 0.57 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 13 49027160 49027160 C T RB1 Missense_Mutation p.S576L 0.57 deleterious(0.04) benign(0.03) TCGA-GC-A4ZW-01 13 49281933 49281933 A C CYSLTR2 Missense_Mutation p.K327T 0.11 tolerated(0.14) benign(0.048) TCGA-GC-A4ZW-01 13 49762763 49762763 G C FNDC3A Missense_Mutation p.Q646H 0.08 tolerated(0.61) benign(0.03) TCGA-GC-A4ZW-01 13 52524426 52524426 C G ATP7B Missense_Mutation p.D853H 0.10 deleterious(0) probably_damaging(0.985) TCGA-GC-A4ZW-01 13 52990222 52990222 C G VPS36 Missense_Mutation p.E333Q 0.13 tolerated(0.07) possibly_damaging(0.722) TCGA-GC-A4ZW-01 13 52992141 52992141 C G VPS36 Silent p.L297L 0.13 TCGA-GC-A4ZW-01 13 58207650 58207650 C T PCDH17 Nonsense_Mutation p.R324* 0.12 TCGA-GC-A4ZW-01 13 61102989 61102989 G C TDRD3 Missense_Mutation p.D544H 0.15 deleterious(0.01) possibly_damaging(0.736) TCGA-GC-A4ZW-01 13 67802496 67802496 A C PCDH9 Missense_Mutation p.L26R 0.18 tolerated(0.22) benign(0.085) TCGA-GC-A4ZW-01 13 70681605 70681605 G C KLHL1 Missense_Mutation p.S76C 0.07 tolerated_low_confidence(0.15) possibly_damaging(0.808) TCGA-GC-A4ZW-01 13 72053427 72053427 C G DACH1 Missense_Mutation p.D584H 0.12 probably_damaging(0.996) TCGA-GC-A4ZW-01 13 78133936 78133936 C T SCEL Intron 0.18 TCGA-GC-A4ZW-01 13 79175658 79175658 C T POU4F1 Silent p.K384K 0.27 TCGA-GC-A4ZW-01 13 97484925 97484925 G C HS6ST3 Missense_Mutation p.E297Q 0.13 tolerated(0.15) probably_damaging(0.971) TCGA-GC-A4ZW-01 14 101439970 101439970 G A SNORD114-16 RNA 0.06 TCGA-GC-A4ZW-01 14 102916045 102916045 C T TECPR2 Missense_Mutation p.T1052I 0.10 deleterious(0) benign(0.382) TCGA-GC-A4ZW-01 14 106090869 106090869 C G IGHG4 Missense_Mutation p.E310Q 0.18 deleterious(0) probably_damaging(0.941) TCGA-GC-A4ZW-01 14 106092209 106092209 G A IGHG4 Silent p.L65L 0.15 TCGA-GC-A4ZW-01 14 106866584 106866584 C T IGHV3-38 Missense_Mutation p.R57H 0.38 tolerated_low_confidence(0.06) benign(0.331) TCGA-GC-A4ZW-01 14 20296219 20296219 C T OR4N2 Silent p.G204G 0.30 TCGA-GC-A4ZW-01 14 20836638 20836638 C G TEP1 Silent p.V2614V 0.45 TCGA-GC-A4ZW-01 14 21551041 21551041 G C ARHGEF40 Missense_Mutation p.E1180Q 0.09 tolerated(0.14) possibly_damaging(0.891) TCGA-GC-A4ZW-01 14 22891732 22891732 C G TRDV2 Intron 0.10 TCGA-GC-A4ZW-01 14 22951915 22951915 G A TRAJ57 3'Flank 0.47 TCGA-GC-A4ZW-01 14 23829953 23829953 C T EFS Silent p.Q36Q 0.18 TCGA-GC-A4ZW-01 14 23887573 23887573 C G MYH7 Missense_Mutation p.D1339H 0.13 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 14 24839326 24839326 G A NFATC4 Missense_Mutation p.R304Q 0.30 deleterious(0.03) possibly_damaging(0.844) TCGA-GC-A4ZW-01 14 32561484 32561484 G A ARHGAP5 Missense_Mutation p.D537N 0.50 deleterious(0) possibly_damaging(0.752) TCGA-GC-A4ZW-01 14 33292971 33292971 C G AKAP6 Missense_Mutation p.F1984L 0.42 tolerated(0.29) benign(0.009) TCGA-GC-A4ZW-01 14 35592815 35592815 G C KIAA0391 Missense_Mutation p.E122Q 0.50 deleterious(0.03) probably_damaging(0.969) TCGA-GC-A4ZW-01 14 37145565 37145565 C T PAX9 Missense_Mutation p.P312S 0.16 tolerated_low_confidence(0.08) probably_damaging(0.996) TCGA-GC-A4ZW-01 14 39787170 39787170 G T CTAGE5 Missense_Mutation p.R477I 0.31 deleterious(0) possibly_damaging(0.889) TCGA-GC-A4ZW-01 14 45431779 45431779 G A FAM179B Missense_Mutation p.G52E 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-GC-A4ZW-01 14 51196273 51196273 C T NIN Missense_Mutation p.E2016K 0.24 deleterious(0.01) benign(0.297) TCGA-GC-A4ZW-01 14 51223220 51223220 C G NIN Missense_Mutation p.E1510Q 0.12 tolerated(0.13) benign(0.409) TCGA-GC-A4ZW-01 14 55818625 55818625 C T FBXO34 Missense_Mutation p.S506L 0.19 tolerated(0.07) benign(0.367) TCGA-GC-A4ZW-01 14 59826188 59826188 G A DAAM1 Missense_Mutation p.E877K 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-GC-A4ZW-01 14 63779821 63779821 G A GPHB5 RNA 0.40 TCGA-GC-A4ZW-01 14 70924280 70924280 T A ADAM21 Missense_Mutation p.F22I 0.12 tolerated(0.35) benign(0.015) TCGA-GC-A4ZW-01 14 75136791 75136791 C G AREL1 Silent p.L549L 0.16 TCGA-GC-A4ZW-01 14 76330101 76330101 C T TTLL5 Missense_Mutation p.H1140Y 0.17 tolerated(0.07) benign(0.222) TCGA-GC-A4ZW-01 14 76425483 76425483 C G TGFB3 3'UTR 0.25 TCGA-GC-A4ZW-01 14 86088620 86088620 G A FLRT2 Silent p.L254L 0.40 TCGA-GC-A4ZW-01 14 91252589 91252589 G A TTC7B Nonsense_Mutation p.R69* 0.86 TCGA-GC-A4ZW-01 14 93170995 93170995 G C LGMN Missense_Mutation p.P417A 0.06 tolerated(0.08) benign(0.15) TCGA-GC-A4ZW-01 14 93277950 93277950 G A GOLGA5 Missense_Mutation p.E391K 0.21 deleterious(0) possibly_damaging(0.591) TCGA-GC-A4ZW-01 14 95235320 95235320 A G GSC Missense_Mutation p.V197A 0.55 deleterious(0.01) probably_damaging(0.972) TCGA-GC-A4ZW-01 14 95560294 95560294 G C DICER1 Silent p.L1765L 0.22 TCGA-GC-A4ZW-01 14 96707529 96707529 C G BDKRB2 Missense_Mutation p.I288M 0.09 deleterious(0) possibly_damaging(0.879) TCGA-GC-A4ZW-01 15 25485022 25485022 G C SNORD115-38 RNA 0.06 TCGA-GC-A4ZW-01 15 25953177 25953177 C T ATP10A Missense_Mutation p.E841K 0.14 deleterious(0.01) benign(0.268) TCGA-GC-A4ZW-01 15 28482208 28482208 G C HERC2 Missense_Mutation p.L1302V 0.25 benign(0.158) TCGA-GC-A4ZW-01 15 39874759 39874759 G C THBS1 Missense_Mutation p.E145Q 0.14 deleterious(0) benign(0.069) TCGA-GC-A4ZW-01 15 52702559 52702559 G A MYO5A Missense_Mutation p.L243F 0.32 deleterious(0) probably_damaging(0.988) TCGA-GC-A4ZW-01 15 67524189 67524189 C T AAGAB Silent p.L166L 0.25 TCGA-GC-A4ZW-01 15 74565206 74565206 C T CCDC33 Missense_Mutation p.R245C 0.13 deleterious(0) probably_damaging(0.942) TCGA-GC-A4ZW-01 15 75094686 75094686 C T CSK Silent p.V395V 0.15 TCGA-GC-A4ZW-01 15 79067090 79067090 G C ADAMTS7 Missense_Mutation p.F584L 0.10 tolerated(0.06) benign(0.049) TCGA-GC-A4ZW-01 15 81199080 81199080 G T KIAA1199 Silent p.R496R 0.37 TCGA-GC-A4ZW-01 15 81631818 81631818 G C TMC3 Silent p.L624L 0.93 TCGA-GC-A4ZW-01 15 83451727 83451727 G A FSD2 Silent p.I262I 0.97 TCGA-GC-A4ZW-01 15 86236579 86236579 G A AKAP13 Silent p.K1791K 0.27 TCGA-GC-A4ZW-01 15 90135391 90135391 T C TICRR Silent p.L509L 0.96 TCGA-GC-A4ZW-01 15 90152041 90152041 C G TICRR Silent p.T910T 0.24 TCGA-GC-A4ZW-01 15 91496811 91496811 G C UNC45A Silent p.L900L 0.20 TCGA-GC-A4ZW-01 15 91545310 91545310 C A VPS33B Missense_Mutation p.V459L 0.72 tolerated(0.28) benign(0.026) TCGA-GC-A4ZW-01 16 1033780 1033780 C G SOX8 Missense_Mutation p.R159G 0.09 deleterious(0) probably_damaging(0.997) TCGA-GC-A4ZW-01 16 1144027 1144027 C T C1QTNF8 Missense_Mutation p.R78Q 0.21 deleterious(0.04) benign(0.207) TCGA-GC-A4ZW-01 16 1544271 1544271 C G TELO2 5'UTR 0.15 TCGA-GC-A4ZW-01 16 16150011 16150011 C T ABCC1 Silent p.I512I 0.04 TCGA-GC-A4ZW-01 16 1709909 1709909 C G CRAMP1L Missense_Mutation p.S753C 0.68 deleterious(0) probably_damaging(0.917) TCGA-GC-A4ZW-01 16 19702715 19702715 C A C16orf62 Missense_Mutation p.F945L 0.07 deleterious(0) probably_damaging(0.915) TCGA-GC-A4ZW-01 16 20359555 20359555 G A UMOD Silent p.F321F 0.21 TCGA-GC-A4ZW-01 16 20975168 20975168 G A DNAH3 Silent p.I3346I 0.63 TCGA-GC-A4ZW-01 16 20975375 20975375 C T DNAH3 Silent p.Q3277Q 0.07 TCGA-GC-A4ZW-01 16 21216807 21216807 G C ZP2 Silent p.L209L 0.06 TCGA-GC-A4ZW-01 16 2153848 2153848 G C PKD1 Nonsense_Mutation p.S2737* 0.78 TCGA-GC-A4ZW-01 16 2154572 2154572 G A PKD1 Silent p.L2696L 0.87 TCGA-GC-A4ZW-01 16 22271812 22271812 A G EEF2K Missense_Mutation p.M421V 0.10 tolerated(0.55) benign(0) TCGA-GC-A4ZW-01 16 22926265 22926265 G C HS3ST2 Missense_Mutation p.R162S 0.05 deleterious(0) probably_damaging(0.925) TCGA-GC-A4ZW-01 16 23649225 23649225 C G PALB2 Missense_Mutation p.E53Q 0.16 tolerated(0.06) benign(0.409) TCGA-GC-A4ZW-01 16 24183620 24183620 G C PRKCB Silent p.V423V 0.17 TCGA-GC-A4ZW-01 16 25189433 25189433 C A LCMT1 3'UTR 0.22 TCGA-GC-A4ZW-01 16 2732689 2732689 G C KCTD5 Missense_Mutation p.R47P 0.16 deleterious(0.02) benign(0.219) TCGA-GC-A4ZW-01 16 27761278 27761278 C G KIAA0556 Missense_Mutation p.F999L 0.17 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 16 28993286 28993286 C T SPNS1 Silent p.L292L 0.18 TCGA-GC-A4ZW-01 16 31505021 31505021 C G C16orf58 Missense_Mutation p.L287F 0.19 tolerated(0.22) possibly_damaging(0.572) TCGA-GC-A4ZW-01 16 3349531 3349531 C G TIGD7 Missense_Mutation p.E362Q 0.12 tolerated(0.06) benign(0.15) TCGA-GC-A4ZW-01 16 3828054 3828054 G A CREBBP Nonsense_Mutation p.Q691* 0.21 TCGA-GC-A4ZW-01 16 48121872 48121872 G A ABCC12 Silent p.I1200I 0.17 TCGA-GC-A4ZW-01 16 4934746 4934746 T - PPL Frame_Shift_Del p.T1304Pfs*8 0.18 TCGA-GC-A4ZW-01 16 52484370 52484370 G A TOX3 Missense_Mutation p.S166F 0.18 deleterious(0.04) possibly_damaging(0.687) TCGA-GC-A4ZW-01 16 55601510 55601510 C G CAPNS2 3'UTR 0.21 TCGA-GC-A4ZW-01 16 56868680 56868680 G A NUP93 Missense_Mutation p.G591E 0.57 deleterious(0) probably_damaging(0.996) TCGA-GC-A4ZW-01 16 64981408 64981408 G A CDH11 3'UTR 0.59 TCGA-GC-A4ZW-01 16 65025704 65025704 C T CDH11 Missense_Mutation p.D260N 0.72 deleterious(0) possibly_damaging(0.805) TCGA-GC-A4ZW-01 16 66844610 66844610 G A NAE1 Missense_Mutation p.S367F 0.08 deleterious(0.01) benign(0.127) TCGA-GC-A4ZW-01 16 66967969 66967969 T C FAM96B Missense_Mutation p.D48G 0.51 deleterious(0.01) probably_damaging(0.955) TCGA-GC-A4ZW-01 16 67233494 67233494 C T ELMO3 Silent p.D92D 0.06 TCGA-GC-A4ZW-01 16 67236181 67236181 G A ELMO3 Missense_Mutation p.E472K 0.07 deleterious(0) benign(0.165) TCGA-GC-A4ZW-01 16 67405021 67405021 C G LRRC36 Nonsense_Mutation p.S457* 0.05 TCGA-GC-A4ZW-01 16 70390116 70390116 C T DDX19A Silent p.L87L 0.20 TCGA-GC-A4ZW-01 16 84270752 84270752 C G KCNG4 Missense_Mutation p.D114H 0.32 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 16 86613461 86613461 C G FOXL1 3'UTR 0.27 TCGA-GC-A4ZW-01 16 88601373 88601373 G A ZFPM1 Missense_Mutation p.E1003K 0.18 deleterious(0) benign(0.305) TCGA-GC-A4ZW-01 16 89187219 89187219 G T ACSF3 Silent p.G379G 0.14 TCGA-GC-A4ZW-01 16 89187271 89187271 G A ACSF3 Missense_Mutation p.E397K 0.10 tolerated(0.59) benign(0.186) TCGA-GC-A4ZW-01 17 10295861 10295861 G C MYH8 Missense_Mutation p.Q1856E 0.22 deleterious(0.01) benign(0.077) TCGA-GC-A4ZW-01 17 10358968 10358968 A G MYH4 Missense_Mutation p.F713L 0.17 deleterious(0.01) possibly_damaging(0.743) TCGA-GC-A4ZW-01 17 10404693 10404693 C T MYH1 Missense_Mutation p.G1158S 0.88 deleterious(0.05) probably_damaging(1) TCGA-GC-A4ZW-01 17 10543786 10543786 C T MYH3 Missense_Mutation p.V764M 0.79 deleterious(0) probably_damaging(0.997) TCGA-GC-A4ZW-01 17 12916577 12916577 G A ELAC2 Missense_Mutation p.S169F 0.16 deleterious(0) possibly_damaging(0.883) TCGA-GC-A4ZW-01 17 16068390 16068390 G C NCOR1 Nonsense_Mutation p.S174* 0.19 TCGA-GC-A4ZW-01 17 18634423 18634423 C G TRIM16L Missense_Mutation p.P81R 0.27 deleterious(0) probably_damaging(0.973) TCGA-GC-A4ZW-01 17 27013805 27013805 G C SUPT6H Missense_Mutation p.E900Q 0.22 tolerated(0.4) benign(0.052) TCGA-GC-A4ZW-01 17 27580796 27580796 G A CRYBA1 Missense_Mutation p.G166R 0.41 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 17 28506222 28506222 G C NSRP1 Missense_Mutation p.D139H 0.13 tolerated(0.13) possibly_damaging(0.461) TCGA-GC-A4ZW-01 17 29622897 29622897 G C OMG Silent p.L151L 0.08 TCGA-GC-A4ZW-01 17 33428294 33428294 G C RAD51L3-RFFL Missense_Mutation p.L118V 0.15 tolerated(0.21) benign(0.002) TCGA-GC-A4ZW-01 17 33772744 33772744 G A SLFN13 Intron 0.45 TCGA-GC-A4ZW-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.51 deleterious(0) probably_damaging(0.994) TCGA-GC-A4ZW-01 17 37879583 37879583 C G ERBB2 Missense_Mutation p.S653C 0.35 deleterious(0.02) possibly_damaging(0.548) TCGA-GC-A4ZW-01 17 37900352 37900352 G C GRB7 Missense_Mutation p.E254D 0.09 deleterious(0.03) probably_damaging(0.989) TCGA-GC-A4ZW-01 17 38445806 38445806 C G CDC6 Missense_Mutation p.S45C 0.15 deleterious(0.01) possibly_damaging(0.503) TCGA-GC-A4ZW-01 17 39119918 39119918 C G KRT39 Silent p.L223L 0.16 TCGA-GC-A4ZW-01 17 40174603 40174603 T A NKIRAS2 Missense_Mutation p.F94Y 0.29 tolerated(0.07) benign(0.394) TCGA-GC-A4ZW-01 17 41166220 41166220 C A IFI35 Missense_Mutation p.F257L 0.13 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 17 4636474 4636474 G C MED11 Missense_Mutation p.E116Q 0.14 tolerated(0.19) probably_damaging(0.913) TCGA-GC-A4ZW-01 17 48677209 48677209 G A CACNA1G Missense_Mutation p.E1227K 0.37 deleterious(0.05) possibly_damaging(0.893) TCGA-GC-A4ZW-01 17 49239232 49239232 C T NME1 3'UTR 0.12 TCGA-GC-A4ZW-01 17 57743901 57743901 C A CLTC Missense_Mutation p.Q615K 0.12 tolerated(0.17) possibly_damaging(0.699) TCGA-GC-A4ZW-01 17 59560672 59560672 C T TBX4 Missense_Mutation p.S478F 0.09 deleterious_low_confidence(0) benign(0.429) TCGA-GC-A4ZW-01 17 61566130 61566130 C G ACE Missense_Mutation p.I809M 0.17 deleterious(0.04) benign(0.423) TCGA-GC-A4ZW-01 17 61842165 61842165 C G CCDC47 Missense_Mutation p.E103Q 0.13 deleterious(0) possibly_damaging(0.833) TCGA-GC-A4ZW-01 17 62529238 62529238 G C CEP95 Missense_Mutation p.E616Q 0.35 tolerated(0.3) probably_damaging(0.953) TCGA-GC-A4ZW-01 17 62891149 62891149 C G LRRC37A3 Missense_Mutation p.E743Q 0.16 tolerated(0.23) benign(0.039) TCGA-GC-A4ZW-01 17 67111626 67111626 G C ABCA6 Silent p.G499G 0.23 TCGA-GC-A4ZW-01 17 67516427 67516427 G A MAP2K6 Missense_Mutation p.C128Y 0.50 deleterious(0.02) benign(0.337) TCGA-GC-A4ZW-01 17 685482 685482 C G GLOD4 Missense_Mutation p.R5T 0.22 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 17 6946960 6946960 G C SLC16A11 5'UTR 0.29 TCGA-GC-A4ZW-01 17 695044 695044 G C RNMTL1 Missense_Mutation p.W333S 0.20 tolerated(0.53) benign(0.055) TCGA-GC-A4ZW-01 17 72308292 72308292 G A DNAI2 Missense_Mutation p.E549K 0.38 deleterious(0.03) benign(0.306) TCGA-GC-A4ZW-01 17 72846043 72846043 G A GRIN2C Silent p.I507I 0.13 TCGA-GC-A4ZW-01 17 73566068 73566068 G A LLGL2 Missense_Mutation p.E536K 0.15 deleterious(0.02) possibly_damaging(0.621) TCGA-GC-A4ZW-01 17 74684204 74684204 C T MXRA7 Missense_Mutation p.E133K 0.18 unknown(0) TCGA-GC-A4ZW-01 17 7481736 7481736 C G EIF4A1 Missense_Mutation p.R385G 0.16 deleterious(0) benign(0.21) TCGA-GC-A4ZW-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.93 deleterious(0) probably_damaging(0.947) TCGA-GC-A4ZW-01 17 76499001 76499001 C T DNAH17 Silent p.P1679P 0.11 TCGA-GC-A4ZW-01 17 7673601 7673601 C T DNAH2 Missense_Mutation p.R1325W 0.90 benign(0.001) TCGA-GC-A4ZW-01 17 7683959 7683959 G A DNAH2 Silent p.K1954K 0.06 TCGA-GC-A4ZW-01 17 77987233 77987233 G C TBC1D16 Missense_Mutation p.I38M 0.25 deleterious(0) possibly_damaging(0.563) TCGA-GC-A4ZW-01 17 7813785 7813785 C T CHD3 Missense_Mutation p.A1936V 0.86 possibly_damaging(0.798) TCGA-GC-A4ZW-01 17 78293343 78293343 C G RNF213 Intron 0.30 TCGA-GC-A4ZW-01 17 79632488 79632488 C T OXLD1 Missense_Mutation p.E63K 0.14 tolerated(0.09) benign(0.155) TCGA-GC-A4ZW-01 17 8054133 8054133 G C PER1 5'UTR 0.21 TCGA-GC-A4ZW-01 17 80789821 80789821 G C ZNF750 Silent p.L170L 0.28 TCGA-GC-A4ZW-01 17 8092621 8092621 G A C17orf59 Missense_Mutation p.R280C 0.87 deleterious(0) benign(0.156) TCGA-GC-A4ZW-01 17 8638491 8638491 G C CCDC42 Missense_Mutation p.L266V 0.18 deleterious(0) probably_damaging(0.985) TCGA-GC-A4ZW-01 18 11851907 11851907 G C CHMP1B Missense_Mutation p.E133Q 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-GC-A4ZW-01 18 13645312 13645312 G T LDLRAD4 Missense_Mutation p.D193Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 18 14105084 14105084 C A ZNF519 Missense_Mutation p.E485D 0.29 deleterious(0.02) benign(0.323) TCGA-GC-A4ZW-01 18 14106194 14106194 C A ZNF519 Silent p.V115V 0.50 TCGA-GC-A4ZW-01 18 19110369 19110369 T C ESCO1 Missense_Mutation p.T820A 0.90 deleterious(0.01) probably_damaging(0.998) TCGA-GC-A4ZW-01 18 2884985 2884985 G C EMILIN2 Missense_Mutation p.R94T 0.20 tolerated(0.27) probably_damaging(0.999) TCGA-GC-A4ZW-01 18 2885104 2885104 G A EMILIN2 Missense_Mutation p.A134T 0.25 tolerated(0.25) benign(0.008) TCGA-GC-A4ZW-01 18 33552713 33552713 G C C18orf21 Missense_Mutation p.E8Q 0.20 tolerated(0.07) possibly_damaging(0.58) TCGA-GC-A4ZW-01 18 33573160 33573160 C G RPRD1A Missense_Mutation p.S298T 0.24 deleterious(0) benign(0.232) TCGA-GC-A4ZW-01 18 52265413 52265413 C G DYNAP 3'UTR 0.28 TCGA-GC-A4ZW-01 18 67816232 67816232 G A RTTN Silent p.L738L 0.12 TCGA-GC-A4ZW-01 18 6870700 6870700 C G ARHGAP28 Nonsense_Mutation p.S149* 0.11 TCGA-GC-A4ZW-01 18 905369 905369 C G ADCYAP1 5'UTR 0.10 TCGA-GC-A4ZW-01 19 1127635 1127635 C T SBNO2 Missense_Mutation p.D137N 0.08 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GC-A4ZW-01 19 14046560 14046560 G C PODNL1 Silent p.L163L 0.21 TCGA-GC-A4ZW-01 19 17417054 17417054 C A MRPL34 Missense_Mutation p.R49S 0.38 tolerated(0.05) possibly_damaging(0.89) TCGA-GC-A4ZW-01 19 17838191 17838191 A C MAP1S Silent p.P666P 0.17 TCGA-GC-A4ZW-01 19 17941394 17941394 G C JAK3 Missense_Mutation p.S1005C 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-GC-A4ZW-01 19 18170402 18170402 C G IL12RB1 3'UTR 0.14 TCGA-GC-A4ZW-01 19 18724814 18724814 G C TMEM59L Missense_Mutation p.E102Q 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-GC-A4ZW-01 19 19049288 19049288 G C HOMER3 Missense_Mutation p.I59M 0.21 deleterious(0) possibly_damaging(0.843) TCGA-GC-A4ZW-01 19 22157455 22157455 T G ZNF208 Missense_Mutation p.K127N 0.21 tolerated(0.11) probably_damaging(0.926) TCGA-GC-A4ZW-01 19 2290757 2290757 G A LINGO3 Missense_Mutation p.S340L 0.37 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 19 23329600 23329600 G A ZNF730 3'UTR 0.60 TCGA-GC-A4ZW-01 19 35739777 35739777 C G LSR 5'UTR 0.17 TCGA-GC-A4ZW-01 19 35832682 35832682 G A CD22 Missense_Mutation p.E617K 0.22 deleterious(0) possibly_damaging(0.824) TCGA-GC-A4ZW-01 19 36219947 36219947 C G KMT2B Silent p.L1583L 0.17 TCGA-GC-A4ZW-01 19 36674441 36674441 C G ZNF565 Missense_Mutation p.G143R 0.20 deleterious(0.03) benign(0.034) TCGA-GC-A4ZW-01 19 37677843 37677843 G A ZNF585B Missense_Mutation p.S199L 0.10 deleterious(0.04) possibly_damaging(0.83) TCGA-GC-A4ZW-01 19 37734117 37734117 C G ZNF383 Missense_Mutation p.Q327E 0.13 tolerated(0.4) probably_damaging(0.996) TCGA-GC-A4ZW-01 19 39787510 39787510 G C IFNL1 Silent p.L79L 0.19 TCGA-GC-A4ZW-01 19 41386406 41386406 G A CYP2A7 Silent p.I157I 0.22 TCGA-GC-A4ZW-01 19 41707183 41707183 G A CYP2S1 Missense_Mutation p.M294I 0.66 tolerated(0.4) benign(0.406) TCGA-GC-A4ZW-01 19 4288296 4288296 A T SHD Missense_Mutation p.K258M 0.71 deleterious(0) possibly_damaging(0.855) TCGA-GC-A4ZW-01 19 42946961 42946961 G A CXCL17 Silent p.L8L 0.18 TCGA-GC-A4ZW-01 19 43697378 43697378 G C PSG4 3'UTR 0.25 TCGA-GC-A4ZW-01 19 43708205 43708205 C G PSG4 Missense_Mutation p.R88T 0.06 tolerated(0.69) benign(0.01) TCGA-GC-A4ZW-01 19 44171776 44171776 C G PLAUR Silent p.L41L 0.11 TCGA-GC-A4ZW-01 19 44417493 44417493 G C ZNF45 3'UTR 0.17 TCGA-GC-A4ZW-01 19 45988965 45988965 C G RTN2 3'UTR 0.45 TCGA-GC-A4ZW-01 19 47421997 47421997 C G ARHGAP35 Missense_Mutation p.S22C 0.16 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 19 49604717 49604717 G C SNRNP70 Missense_Mutation p.R155P 0.14 deleterious(0) probably_damaging(0.996) TCGA-GC-A4ZW-01 19 50185172 50185172 G T PRMT1 Missense_Mutation p.M66I 0.24 deleterious(0.01) benign(0.422) TCGA-GC-A4ZW-01 19 50367631 50367631 G C PNKP Silent p.L176L 0.15 TCGA-GC-A4ZW-01 19 50412354 50412354 G C NUP62 Silent p.L237L 0.13 TCGA-GC-A4ZW-01 19 50475342 50475342 C T VRK3 3'Flank 0.77 TCGA-GC-A4ZW-01 19 50775157 50775157 G A MYH14 Missense_Mutation p.E1075K 0.50 deleterious(0.02) benign(0.413) TCGA-GC-A4ZW-01 19 50917090 50917090 G A POLD1 Nonsense_Mutation p.W781* 0.24 TCGA-GC-A4ZW-01 19 51274264 51274264 C T GPR32 Missense_Mutation p.S136F 0.65 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 19 52002898 52002898 G C SIGLEC12 Missense_Mutation p.S294C 0.49 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 19 52272456 52272456 C G FPR2 Missense_Mutation p.S182C 0.15 tolerated(0.17) possibly_damaging(0.895) TCGA-GC-A4ZW-01 19 54778667 54778667 G C LILRB2 Missense_Mutation p.A556G 0.14 tolerated(0.33) benign(0.004) TCGA-GC-A4ZW-01 19 54783823 54783823 G A LILRB2 Silent p.L60L 0.06 TCGA-GC-A4ZW-01 19 54818752 54818752 C G LILRA5 Silent p.L282L 0.18 TCGA-GC-A4ZW-01 19 54947308 54947308 G A TTYH1 Missense_Mutation p.E436K 0.05 deleterious(0.03) benign(0.275) TCGA-GC-A4ZW-01 19 55019282 55019282 G C LAIR2 Missense_Mutation p.E83Q 0.20 tolerated(0.12) possibly_damaging(0.514) TCGA-GC-A4ZW-01 19 5720748 5720748 G C CATSPERD 5'UTR 0.30 TCGA-GC-A4ZW-01 19 57325769 57325769 G C PEG3 Silent p.L1347L 0.14 TCGA-GC-A4ZW-01 19 57840480 57840480 C T ZNF543 Silent p.L550L 0.13 TCGA-GC-A4ZW-01 19 58320027 58320027 A G ZNF552 Missense_Mutation p.V202A 0.21 tolerated(0.82) benign(0.214) TCGA-GC-A4ZW-01 19 5844083 5844083 G A FUT3 Silent p.I256I 0.19 TCGA-GC-A4ZW-01 19 6897284 6897284 C T EMR1 Silent p.V121V 0.10 TCGA-GC-A4ZW-01 19 7083135 7083135 G C ZNF557 Missense_Mutation p.V225L 0.22 tolerated(0.24) benign(0.008) TCGA-GC-A4ZW-01 19 7152816 7152816 G C INSR Missense_Mutation p.Q718E 0.16 tolerated(0.66) benign(0.002) TCGA-GC-A4ZW-01 19 7990289 7990289 C G CTXN1 Missense_Mutation p.L45F 0.15 deleterious(0) probably_damaging(0.992) TCGA-GC-A4ZW-01 19 8455381 8455381 G A RAB11B Intron 0.61 TCGA-GC-A4ZW-01 19 9046874 9046874 G C MUC16 Missense_Mutation p.T11586R 0.22 benign(0.052) TCGA-GC-A4ZW-01 19 9767308 9767308 G A ZNF562 Missense_Mutation p.S88L 0.21 tolerated(0.15) benign(0.011) TCGA-GC-A4ZW-01 1 100741250 100741250 C G RTCA Missense_Mutation p.D250E 0.07 tolerated(0.4) benign(0.005) TCGA-GC-A4ZW-01 1 10318575 10318575 C G KIF1B Missense_Mutation p.Q70E 0.09 deleterious(0) probably_damaging(0.957) TCGA-GC-A4ZW-01 1 10328316 10328316 G A KIF1B Missense_Mutation p.E239K 0.31 deleterious(0) probably_damaging(0.939) TCGA-GC-A4ZW-01 1 108735220 108735220 G C SLC25A24 Intron 0.15 TCGA-GC-A4ZW-01 1 109193716 109193716 G C HENMT1 Missense_Mutation p.P172A 0.19 deleterious(0.01) possibly_damaging(0.824) TCGA-GC-A4ZW-01 1 109884707 109884707 C G SORT1 Missense_Mutation p.G346A 0.58 deleterious(0.04) benign(0.065) TCGA-GC-A4ZW-01 1 110950425 110950425 G A LAMTOR5 Silent p.L22L 0.16 TCGA-GC-A4ZW-01 1 11129711 11129711 C T EXOSC10 Missense_Mutation p.R798Q 0.12 tolerated(0.23) benign(0.233) TCGA-GC-A4ZW-01 1 11140913 11140913 C T EXOSC10 Silent p.Q498Q 0.11 TCGA-GC-A4ZW-01 1 111492672 111492672 C T LRIF1 Missense_Mutation p.R557K 0.08 tolerated(1) possibly_damaging(0.567) TCGA-GC-A4ZW-01 1 112298290 112298290 G C DDX20 5'UTR 0.10 TCGA-GC-A4ZW-01 1 115273250 115273250 C T CSDE1 Missense_Mutation p.R403K 0.14 tolerated(1) benign(0.245) TCGA-GC-A4ZW-01 1 115399212 115399212 G A SYCP1 Missense_Mutation p.E43K 0.09 tolerated(0.12) probably_damaging(0.999) TCGA-GC-A4ZW-01 1 11575498 11575498 T C PTCHD2 Missense_Mutation p.V509A 0.14 deleterious(0.05) possibly_damaging(0.873) TCGA-GC-A4ZW-01 1 116287500 116287500 C T CASQ2 Missense_Mutation p.G90S 0.64 deleterious(0.05) probably_damaging(1) TCGA-GC-A4ZW-01 1 118609482 118609482 G C SPAG17 Missense_Mutation p.S809C 0.11 deleterious(0.01) probably_damaging(0.991) TCGA-GC-A4ZW-01 1 119618975 119618975 G C WARS2 Missense_Mutation p.Q116E 0.47 tolerated(0.34) benign(0.174) TCGA-GC-A4ZW-01 1 120306888 120306888 C G HMGCS2 Missense_Mutation p.D156H 0.11 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 1 12157271 12157271 C T TNFRSF8 Nonsense_Mutation p.R89* 0.13 TCGA-GC-A4ZW-01 1 144828672 144828672 C G NBPF9 Nonsense_Mutation p.S647* 0.17 TCGA-GC-A4ZW-01 1 145304481 145304481 G C NBPF10 Missense_Mutation p.E472Q 0.06 benign(0.069) TCGA-GC-A4ZW-01 1 145368677 145368677 C G NBPF10 Missense_Mutation p.P3552R 0.07 benign(0.228) TCGA-GC-A4ZW-01 1 145522735 145522735 G C PEX11B Missense_Mutation p.R199P 0.12 tolerated(0.11) benign(0.326) TCGA-GC-A4ZW-01 1 151105549 151105549 G A SEMA6C Missense_Mutation p.S767L 0.29 deleterious(0.03) possibly_damaging(0.504) TCGA-GC-A4ZW-01 1 151263616 151263616 C G ZNF687 Silent p.L1215L 0.14 TCGA-GC-A4ZW-01 1 151372140 151372140 C G PSMB4 Missense_Mutation p.S26C 0.13 deleterious(0) benign(0) TCGA-GC-A4ZW-01 1 153317828 153317828 G C PGLYRP4 Missense_Mutation p.S57C 0.12 deleterious(0.02) probably_damaging(0.935) TCGA-GC-A4ZW-01 1 155255715 155255715 C T HCN3 Silent p.G479G 0.15 TCGA-GC-A4ZW-01 1 155723052 155723052 C G GON4L Missense_Mutation p.E1929Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-GC-A4ZW-01 1 156354384 156354384 C T RHBG Missense_Mutation p.S434L 0.71 deleterious_low_confidence(0.02) benign(0) TCGA-GC-A4ZW-01 1 157559026 157559026 C T FCRL4 Missense_Mutation p.R92Q 0.29 tolerated(0.4) benign(0.001) TCGA-GC-A4ZW-01 1 157772275 157772275 C G FCRL1 Missense_Mutation p.E167Q 0.11 deleterious(0.03) possibly_damaging(0.649) TCGA-GC-A4ZW-01 1 157805786 157805786 C T CD5L Missense_Mutation p.G72E 0.12 tolerated(0.61) benign(0.055) TCGA-GC-A4ZW-01 1 15790016 15790016 G A CELA2A Silent p.Q164Q 0.10 TCGA-GC-A4ZW-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.21 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 1 158815738 158815738 A T MNDA Missense_Mutation p.Q311L 0.53 tolerated(0.64) benign(0.129) TCGA-GC-A4ZW-01 1 159860299 159860299 G T CCDC19 Silent p.L81L 0.15 TCGA-GC-A4ZW-01 1 160309763 160309763 C T COPA Missense_Mutation p.R55Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 1 160794005 160794005 C G LY9 Nonsense_Mutation p.S622* 0.09 TCGA-GC-A4ZW-01 1 161011185 161011185 C T USF1 Missense_Mutation p.M163I 0.19 deleterious(0) benign(0.38) TCGA-GC-A4ZW-01 1 166039933 166039933 T G FAM78B Missense_Mutation p.S111R 0.15 tolerated(0.61) probably_damaging(0.943) TCGA-GC-A4ZW-01 1 166039934 166039934 C T FAM78B Silent p.V110V 0.15 TCGA-GC-A4ZW-01 1 171756977 171756977 G T METTL13 Missense_Mutation p.D406Y 0.15 deleterious(0) possibly_damaging(0.713) TCGA-GC-A4ZW-01 1 17281920 17281920 G A CROCC Silent p.V1193V 0.12 TCGA-GC-A4ZW-01 1 173879053 173879053 C T SERPINC1 Missense_Mutation p.E264K 0.18 tolerated(0.35) benign(0.009) TCGA-GC-A4ZW-01 1 180804090 180804090 G C XPR1 Silent p.V405V 0.25 TCGA-GC-A4ZW-01 1 182555198 182555198 C G RNASEL Missense_Mutation p.E248D 0.20 deleterious(0.01) benign(0.006) TCGA-GC-A4ZW-01 1 185953339 185953339 G A HMCN1 Silent p.G943G 0.20 TCGA-GC-A4ZW-01 1 186282919 186282919 G A TPR 3'UTR 0.12 TCGA-GC-A4ZW-01 1 19441386 19441386 T C UBR4 Silent p.K3707K 0.33 TCGA-GC-A4ZW-01 1 19499422 19499422 C G UBR4 Missense_Mutation p.E1153Q 0.28 benign(0.011) TCGA-GC-A4ZW-01 1 19524493 19524493 G C UBR4 Missense_Mutation p.I233M 0.60 benign(0.073) TCGA-GC-A4ZW-01 1 196695993 196695993 C T CFH Missense_Mutation p.S720L 0.11 tolerated(0.22) benign(0.109) TCGA-GC-A4ZW-01 1 198713225 198713225 C G PTPRC Missense_Mutation p.Q914E 0.12 deleterious(0) probably_damaging(0.991) TCGA-GC-A4ZW-01 1 201984387 201984389 TCT - ELF3 In_Frame_Del p.V351_Y352delinsD 0.60 TCGA-GC-A4ZW-01 1 203468816 203468816 C A OPTC Missense_Mutation p.S190Y 0.17 deleterious(0) probably_damaging(0.95) TCGA-GC-A4ZW-01 1 203786190 203786190 C G ZC3H11A 5'UTR 0.13 TCGA-GC-A4ZW-01 1 204951070 204951070 G C NFASC Missense_Mutation p.E798Q 0.52 deleterious(0.02) probably_damaging(0.984) TCGA-GC-A4ZW-01 1 205895700 205895700 T G SLC26A9 Missense_Mutation p.D451A 0.12 deleterious(0) probably_damaging(0.973) TCGA-GC-A4ZW-01 1 206231058 206231058 C T AVPR1B Silent p.L397L 0.16 TCGA-GC-A4ZW-01 1 21560048 21560048 C T ECE1 Intron 0.21 TCGA-GC-A4ZW-01 1 223285504 223285504 C T TLR5 Silent p.V290V 0.41 TCGA-GC-A4ZW-01 1 22456219 22456219 C T WNT4 Missense_Mutation p.R68H 0.13 deleterious(0.04) probably_damaging(0.954) TCGA-GC-A4ZW-01 1 224581633 224581633 C T WDR26 Silent p.V619V 0.18 TCGA-GC-A4ZW-01 1 225605707 225605707 G C LBR Missense_Mutation p.F272L 0.08 tolerated(1) benign(0.036) TCGA-GC-A4ZW-01 1 225965632 225965632 T A SRP9 5'UTR 0.10 TCGA-GC-A4ZW-01 1 225965633 225965633 C G SRP9 5'UTR 0.10 TCGA-GC-A4ZW-01 1 228294489 228294489 C T MRPL55 Missense_Mutation p.R156Q 0.12 tolerated(0.12) benign(0.016) TCGA-GC-A4ZW-01 1 228433261 228433261 C G OBSCN Nonsense_Mutation p.S1302* 0.17 TCGA-GC-A4ZW-01 1 22848118 22848118 G C ZBTB40 Missense_Mutation p.E1060Q 0.22 tolerated(0.19) benign(0.01) TCGA-GC-A4ZW-01 1 228613027 228613027 G A HIST3H3 5'Flank 0.18 TCGA-GC-A4ZW-01 1 229577677 229577677 C T NUP133 Missense_Mutation p.E1149K 0.19 deleterious(0) possibly_damaging(0.899) TCGA-GC-A4ZW-01 1 23234511 23234511 G T EPHB2 Missense_Mutation p.M735I 0.09 deleterious(0) possibly_damaging(0.561) TCGA-GC-A4ZW-01 1 233507950 233507950 C G MLK4 Intron 0.09 TCGA-GC-A4ZW-01 1 234445054 234445054 C T SLC35F3 Silent p.F272F 0.12 TCGA-GC-A4ZW-01 1 236212121 236212121 G A NID1 Nonsense_Mutation p.Q132* 0.22 TCGA-GC-A4ZW-01 1 23637048 23637048 G A HNRNPR Nonsense_Mutation p.Q604* 0.14 TCGA-GC-A4ZW-01 1 247769166 247769166 T G OR2G3 Silent p.T93T 0.11 TCGA-GC-A4ZW-01 1 248085038 248085038 C G OR2T8 Missense_Mutation p.S240C 0.15 deleterious(0) benign(0.443) TCGA-GC-A4ZW-01 1 26349253 26349253 G A EXTL1 Missense_Mutation p.R39Q 0.15 tolerated(0.61) unknown(0) TCGA-GC-A4ZW-01 1 27101048 27101048 G C ARID1A Missense_Mutation p.E1444Q 0.17 unknown(0) TCGA-GC-A4ZW-01 1 27268100 27268100 C T NUDC Silent p.I104I 0.19 TCGA-GC-A4ZW-01 1 3329108 3329108 A G PRDM16 Missense_Mutation p.K783E 0.08 deleterious(0.01) possibly_damaging(0.682) TCGA-GC-A4ZW-01 1 35657035 35657035 G C SFPQ Missense_Mutation p.I308M 0.11 tolerated(0.08) possibly_damaging(0.667) TCGA-GC-A4ZW-01 1 35936559 35936559 C T KIAA0319L Missense_Mutation p.E340K 0.13 tolerated(0.11) benign(0.009) TCGA-GC-A4ZW-01 1 36024762 36024762 G A NCDN Missense_Mutation p.E30K 0.06 tolerated(0.05) benign(0.013) TCGA-GC-A4ZW-01 1 36226063 36226063 C T CLSPN Missense_Mutation p.E487K 0.13 deleterious(0.05) possibly_damaging(0.765) TCGA-GC-A4ZW-01 1 39340430 39340430 G C GJA9 Missense_Mutation p.F447L 0.16 tolerated(0.71) benign(0.002) TCGA-GC-A4ZW-01 1 39797162 39797162 G A MACF1 Intron 0.16 TCGA-GC-A4ZW-01 1 39876870 39876870 G A KIAA0754 Silent p.L175L 0.09 TCGA-GC-A4ZW-01 1 39898725 39898725 C G MACF1 Missense_Mutation p.F3759L 0.12 probably_damaging(0.998) TCGA-GC-A4ZW-01 1 43917305 43917305 G C SZT2 3'UTR 0.10 TCGA-GC-A4ZW-01 1 44137346 44137346 C T KDM4A Silent p.L512L 0.15 TCGA-GC-A4ZW-01 1 44423127 44423127 C T IPO13 Silent p.V482V 0.12 TCGA-GC-A4ZW-01 1 44437211 44437211 G C DPH2 Missense_Mutation p.E213Q 0.13 deleterious(0.01) possibly_damaging(0.864) TCGA-GC-A4ZW-01 1 54474683 54474683 G C LDLRAD1 Missense_Mutation p.S197C 0.12 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 1 64114264 64114264 G C PGM1 Missense_Mutation p.Q425H 0.06 deleterious(0.01) possibly_damaging(0.801) TCGA-GC-A4ZW-01 1 6533219 6533219 C G PLEKHG5 Missense_Mutation p.E350Q 0.16 deleterious(0.04) probably_damaging(0.979) TCGA-GC-A4ZW-01 1 6639419 6639419 C G TAS1R1 Silent p.L767L 0.16 TCGA-GC-A4ZW-01 1 67206348 67206348 G A SGIP1 Missense_Mutation p.E748K 0.14 deleterious(0) possibly_damaging(0.705) TCGA-GC-A4ZW-01 1 67635046 67635046 C G IL23R Missense_Mutation p.S31C 0.12 deleterious(0.01) probably_damaging(0.938) TCGA-GC-A4ZW-01 1 70385484 70385484 C T LRRC7 Intron 0.41 TCGA-GC-A4ZW-01 1 70766588 70766588 A G ANKRD13C Silent p.L260L 0.07 TCGA-GC-A4ZW-01 1 93599671 93599671 C G MTF2 Nonsense_Mutation p.S448* 0.20 TCGA-GC-A4ZW-01 1 93701823 93701823 G C CCDC18 Missense_Mutation p.E880Q 0.14 tolerated(0.1) possibly_damaging(0.721) TCGA-GC-A4ZW-01 20 10025085 10025085 T C ANKEF1 Missense_Mutation p.V197A 0.19 tolerated(0.56) benign(0.024) TCGA-GC-A4ZW-01 20 11899106 11899106 G C BTBD3 Missense_Mutation p.K61N 0.14 deleterious_low_confidence(0.01) benign(0.002) TCGA-GC-A4ZW-01 20 20453572 20453572 C G RALGAPA2 Missense_Mutation p.G1799A 0.14 deleterious(0.01) probably_damaging(0.98) TCGA-GC-A4ZW-01 20 23346268 23346268 G C GZF1 Silent p.L416L 0.15 TCGA-GC-A4ZW-01 20 25295558 25295558 C G ABHD12 Intron 0.14 TCGA-GC-A4ZW-01 20 257999 257999 C T C20orf96 Silent p.L197L 0.16 TCGA-GC-A4ZW-01 20 3026381 3026381 G C GNRH2 Nonstop_Mutation p.*121Sext*? 0.15 TCGA-GC-A4ZW-01 20 31699338 31699338 C T BPIFB4 3'UTR 0.41 TCGA-GC-A4ZW-01 20 32005595 32005595 C T SNTA1 Missense_Mutation p.E211K 0.10 deleterious(0.04) benign(0.036) TCGA-GC-A4ZW-01 20 3202541 3202541 C T ITPA Nonsense_Mutation p.Q156* 0.17 TCGA-GC-A4ZW-01 20 33297218 33297218 C G TP53INP2 Missense_Mutation p.I101M 0.13 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 20 34025266 34025266 T C GDF5 Missense_Mutation p.K148R 0.11 tolerated(0.32) probably_damaging(0.973) TCGA-GC-A4ZW-01 20 34203945 34203945 C A SPAG4 Missense_Mutation p.P7Q 0.16 deleterious_low_confidence(0) unknown(0) TCGA-GC-A4ZW-01 20 36028676 36028676 G C SRC Missense_Mutation p.V340L 0.10 deleterious(0.01) benign(0.443) TCGA-GC-A4ZW-01 20 3766581 3766581 C G CENPB Missense_Mutation p.E184Q 0.10 tolerated(0.17) unknown(0) TCGA-GC-A4ZW-01 20 39729986 39729986 G A TOP1 Missense_Mutation p.R434Q 0.10 deleterious(0.01) probably_damaging(0.918) TCGA-GC-A4ZW-01 20 43132597 43132597 C T SERINC3 Missense_Mutation p.R305H 0.27 tolerated(0.56) benign(0.002) TCGA-GC-A4ZW-01 20 44520321 44520321 C A CTSA Silent p.L56L 0.14 TCGA-GC-A4ZW-01 20 45905486 45905486 G C ZMYND8 Missense_Mutation p.S351C 0.14 deleterious(0) probably_damaging(0.987) TCGA-GC-A4ZW-01 20 48491336 48491336 C A SLC9A8 Silent p.L367L 0.39 TCGA-GC-A4ZW-01 20 57016104 57016104 G T VAPB Missense_Mutation p.V180F 0.39 deleterious(0.02) possibly_damaging(0.494) TCGA-GC-A4ZW-01 20 58440678 58440678 T C SYCP2 Missense_Mutation p.K1470E 0.51 tolerated(0.06) possibly_damaging(0.768) TCGA-GC-A4ZW-01 20 60773803 60773803 C G MTG2 Missense_Mutation p.F194L 0.15 deleterious(0) probably_damaging(0.988) TCGA-GC-A4ZW-01 20 62200148 62200148 G A HELZ2 Silent p.F431F 0.24 TCGA-GC-A4ZW-01 20 62366846 62366846 G A ZGPAT Missense_Mutation p.E463K 0.15 tolerated(0.59) benign(0.147) TCGA-GC-A4ZW-01 20 861826 861826 C T ANGPT4 Silent p.T313T 0.15 TCGA-GC-A4ZW-01 21 19666584 19666584 C G TMPRSS15 Intron 0.18 TCGA-GC-A4ZW-01 21 35468525 35468525 G C SLC5A3 Missense_Mutation p.R343T 0.11 tolerated(0.18) benign(0.01) TCGA-GC-A4ZW-01 21 37518783 37518783 C G CBR3 Silent p.V269V 0.07 TCGA-GC-A4ZW-01 21 39671975 39671975 G A KCNJ15 Silent p.L264L 0.12 TCGA-GC-A4ZW-01 21 46387037 46387037 C T FAM207A Silent p.L147L 0.09 TCGA-GC-A4ZW-01 22 17684530 17684530 C G CECR1 Missense_Mutation p.D226H 0.19 deleterious(0.01) probably_damaging(0.948) TCGA-GC-A4ZW-01 22 17688029 17688029 T C CECR1 Silent p.K158K 0.28 TCGA-GC-A4ZW-01 22 19423198 19423198 G C MRPL40 Missense_Mutation p.E112Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 22 19950299 19950299 G A COMT Missense_Mutation p.E84K 0.07 tolerated(0.59) benign(0.031) TCGA-GC-A4ZW-01 22 20103916 20103916 G C TRMT2A Missense_Mutation p.R82G 0.17 deleterious(0.01) possibly_damaging(0.888) TCGA-GC-A4ZW-01 22 21800659 21800659 C G HIC2 Nonsense_Mutation p.S492* 0.17 TCGA-GC-A4ZW-01 22 23981044 23981044 G A GUSBP11 RNA 0.83 TCGA-GC-A4ZW-01 22 25158482 25158482 G A PIWIL3 5'UTR 0.57 TCGA-GC-A4ZW-01 22 26690287 26690287 G C SEZ6L Missense_Mutation p.E289Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-GC-A4ZW-01 22 29940532 29940532 C T THOC5 Missense_Mutation p.E53K 0.12 tolerated(0.33) possibly_damaging(0.636) TCGA-GC-A4ZW-01 22 31723132 31723132 C T PATZ1 Silent p.K603K 0.05 TCGA-GC-A4ZW-01 22 33733726 33733726 C T LARGE Missense_Mutation p.R398H 0.15 deleterious(0) probably_damaging(0.939) TCGA-GC-A4ZW-01 22 37396022 37396022 G C TEX33 Missense_Mutation p.Q165E 0.11 tolerated(0.12) benign(0.092) TCGA-GC-A4ZW-01 22 37457635 37457635 C T KCTD17 Missense_Mutation p.R264W 0.18 tolerated_low_confidence(0.18) benign(0.001) TCGA-GC-A4ZW-01 22 37893068 37893068 C T CARD10 Silent p.R635R 0.20 TCGA-GC-A4ZW-01 22 38122318 38122318 C T TRIOBP Missense_Mutation p.S1252F 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-GC-A4ZW-01 22 38465093 38465093 G A PICK1 Missense_Mutation p.D135N 0.15 deleterious(0) probably_damaging(0.995) TCGA-GC-A4ZW-01 22 39148668 39148668 A G SUN2 Intron 0.33 TCGA-GC-A4ZW-01 22 41077004 41077004 C T MCHR1 Missense_Mutation p.S114L 0.21 deleterious(0.01) benign(0.401) TCGA-GC-A4ZW-01 22 44258245 44258245 G T SULT4A1 Silent p.A6A 0.16 TCGA-GC-A4ZW-01 22 46654685 46654685 G A PKDREJ Missense_Mutation p.S1512F 0.30 deleterious(0.02) benign(0.007) TCGA-GC-A4ZW-01 22 50280760 50280760 G C ZBED4 Missense_Mutation p.M1150I 0.20 tolerated(0.63) benign(0.009) TCGA-GC-A4ZW-01 2 108488112 108488112 G T RGPD4 Nonsense_Mutation p.E1218* 0.10 TCGA-GC-A4ZW-01 2 116510792 116510792 G C DPP10 Missense_Mutation p.K335N 0.36 deleterious(0.03) benign(0.024) TCGA-GC-A4ZW-01 2 122488663 122488663 C T NIFK Missense_Mutation p.E124K 0.14 deleterious(0.04) benign(0.007) TCGA-GC-A4ZW-01 2 128477495 128477495 G C WDR33 Missense_Mutation p.Q702E 0.18 tolerated_low_confidence(0.1) unknown(0) TCGA-GC-A4ZW-01 2 136071137 136071137 C G ZRANB3 Missense_Mutation p.M296I 0.11 deleterious(0.04) benign(0.033) TCGA-GC-A4ZW-01 2 141208160 141208160 C G LRP1B Missense_Mutation p.G3345A 0.41 probably_damaging(0.939) TCGA-GC-A4ZW-01 2 167262314 167262314 A T SCN7A Missense_Mutation p.F1609I 0.34 deleterious(0.05) benign(0.266) TCGA-GC-A4ZW-01 2 17897452 17897452 G A SMC6 Nonsense_Mutation p.R476* 0.14 TCGA-GC-A4ZW-01 2 17902289 17902289 T C SMC6 Missense_Mutation p.K288R 0.25 tolerated(0.35) benign(0.029) TCGA-GC-A4ZW-01 2 179427744 179427744 G A TTN Silent p.P27705P 0.36 TCGA-GC-A4ZW-01 2 179613550 179613550 G A TTN Intron 0.18 TCGA-GC-A4ZW-01 2 185801873 185801873 G C ZNF804A Missense_Mutation p.E584Q 0.31 deleterious(0.02) benign(0.05) TCGA-GC-A4ZW-01 2 187693053 187693053 C G ZSWIM2 Missense_Mutation p.K520N 0.19 tolerated(0.06) possibly_damaging(0.799) TCGA-GC-A4ZW-01 2 189599521 189599521 C T DIRC1 Missense_Mutation p.V43I 0.71 tolerated_low_confidence(0.84) benign(0.198) TCGA-GC-A4ZW-01 2 20234080 20234080 G C LAPTM4A Missense_Mutation p.Q209E 0.13 tolerated(1) benign(0.057) TCGA-GC-A4ZW-01 2 204259522 204259522 G C ABI2 Missense_Mutation p.Q220H 0.24 tolerated(0.39) benign(0.029) TCGA-GC-A4ZW-01 2 207041944 207041944 C T GPR1 Missense_Mutation p.E10K 0.42 deleterious(0.03) unknown(0) TCGA-GC-A4ZW-01 2 209192996 209192996 C T PIKFYVE Silent p.V1237V 0.35 TCGA-GC-A4ZW-01 2 210642140 210642140 G C UNC80 Missense_Mutation p.E153Q 0.42 probably_damaging(0.979) TCGA-GC-A4ZW-01 2 210658505 210658505 C G UNC80 Nonsense_Mutation p.S287* 0.27 TCGA-GC-A4ZW-01 2 21229256 21229256 G C APOB Missense_Mutation p.S3495C 0.12 probably_damaging(0.91) TCGA-GC-A4ZW-01 2 21247958 21247958 C G APOB Silent p.L761L 0.12 TCGA-GC-A4ZW-01 2 216177190 216177190 G T ATIC Intron 0.38 TCGA-GC-A4ZW-01 2 216240361 216240361 C T FN1 Missense_Mutation p.A1990T 0.38 tolerated(0.11) probably_damaging(0.996) TCGA-GC-A4ZW-01 2 217279844 217279844 G C SMARCAL1 Missense_Mutation p.L139F 0.32 tolerated_low_confidence(0.69) benign(0.007) TCGA-GC-A4ZW-01 2 225684208 225684208 C G DOCK10 Missense_Mutation p.K1074N 0.26 tolerated(0.23) benign(0.298) TCGA-GC-A4ZW-01 2 225684224 225684224 C G DOCK10 Missense_Mutation p.R1069P 0.18 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 2 228680278 228680278 C A CCL20 Missense_Mutation p.A62D 0.11 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 2 228881438 228881438 C A SPHKAP Nonsense_Mutation p.E1378* 0.37 TCGA-GC-A4ZW-01 2 240061489 240061489 G A HDAC4 Missense_Mutation p.S290F 0.96 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 2 25972969 25972969 C G ASXL2 Missense_Mutation p.E486Q 0.16 tolerated(0.23) possibly_damaging(0.754) TCGA-GC-A4ZW-01 2 26022323 26022323 C T ASXL2 Missense_Mutation p.E112K 0.14 deleterious(0) possibly_damaging(0.811) TCGA-GC-A4ZW-01 2 27360102 27360102 G A C2orf53 Nonsense_Mutation p.Q366* 0.53 TCGA-GC-A4ZW-01 2 27680575 27680575 G C IFT172 Silent p.L1053L 0.14 TCGA-GC-A4ZW-01 2 32526501 32526501 C G YIPF4 Silent p.L178L 0.14 TCGA-GC-A4ZW-01 2 37458739 37458739 C G CEBPZ 5'UTR 0.33 TCGA-GC-A4ZW-01 2 37580050 37580050 G A QPCT Missense_Mutation p.G80E 0.30 deleterious(0) probably_damaging(0.995) TCGA-GC-A4ZW-01 2 42871321 42871321 G C MTA3 Missense_Mutation p.D146H 0.14 deleterious(0) probably_damaging(0.991) TCGA-GC-A4ZW-01 2 44132877 44132877 G A LRPPRC Silent p.A1106A 0.33 TCGA-GC-A4ZW-01 2 48025877 48025877 C G MSH6 Nonsense_Mutation p.S252* 0.18 TCGA-GC-A4ZW-01 2 54080672 54080672 G A GPR75 Nonsense_Mutation p.R408* 0.11 TCGA-GC-A4ZW-01 2 54081326 54081326 G C GPR75 Missense_Mutation p.L190V 0.31 tolerated(0.15) probably_damaging(0.999) TCGA-GC-A4ZW-01 2 54081621 54081621 G C GPR75 Silent p.L91L 0.20 TCGA-GC-A4ZW-01 2 54845219 54845219 G C SPTBN1 Missense_Mutation p.D218H 0.10 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 2 55561743 55561743 C T CCDC88A Silent p.K738K 0.50 TCGA-GC-A4ZW-01 2 61010337 61010337 C G PAPOLG Missense_Mutation p.L387V 0.24 deleterious(0) benign(0.161) TCGA-GC-A4ZW-01 2 61319621 61319621 G A KIAA1841 Missense_Mutation p.E371K 0.58 tolerated(0.08) possibly_damaging(0.88) TCGA-GC-A4ZW-01 2 62449650 62449650 G C B3GNT2 Missense_Mutation p.D99H 0.14 tolerated(0.06) probably_damaging(0.954) TCGA-GC-A4ZW-01 2 64682776 64682776 G A LGALSL Silent p.V54V 0.43 TCGA-GC-A4ZW-01 2 68765235 68765235 G C APLF Missense_Mutation p.E346Q 0.10 tolerated(0.09) benign(0.338) TCGA-GC-A4ZW-01 2 73899511 73899511 G A ALMS1P RNA 0.19 TCGA-GC-A4ZW-01 2 74042613 74042613 G A C2orf78 Silent p.K421K 0.25 TCGA-GC-A4ZW-01 2 74720334 74720334 C G TTC31 Missense_Mutation p.Q517E 0.25 deleterious_low_confidence(0.01) benign(0.058) TCGA-GC-A4ZW-01 2 86258591 86258591 C A POLR1A Silent p.L1480L 0.37 TCGA-GC-A4ZW-01 2 89278242 89278242 C G IGKV3-7 Silent p.L31L 0.14 TCGA-GC-A4ZW-01 2 97508122 97508122 C G ANKRD23 Missense_Mutation p.E52Q 0.08 tolerated(0.22) benign(0.372) TCGA-GC-A4ZW-01 2 97810263 97810263 C G ANKRD36 Missense_Mutation p.Q304E 0.18 tolerated_low_confidence(0.13) benign(0.184) TCGA-GC-A4ZW-01 2 98408979 98408979 C T TMEM131 Silent p.A1338A 0.21 TCGA-GC-A4ZW-01 3 100645264 100645264 G C ABI3BP Missense_Mutation p.F54L 0.37 deleterious(0) benign(0.153) TCGA-GC-A4ZW-01 3 110852915 110852915 C G PVRL3 Silent p.L501L 0.12 TCGA-GC-A4ZW-01 3 118948832 118948832 G C B4GALT4 Missense_Mutation p.Q39E 0.38 tolerated(0.14) benign(0.007) TCGA-GC-A4ZW-01 3 121412633 121412633 C G GOLGB1 Missense_Mutation p.R2246T 0.13 benign(0.062) TCGA-GC-A4ZW-01 3 122274747 122274747 C G PARP9 Missense_Mutation p.D126H 0.12 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 3 12422892 12422892 G A PPARG Missense_Mutation p.E128K 0.12 tolerated(0.08) possibly_damaging(0.585) TCGA-GC-A4ZW-01 3 124461077 124461077 C G UMPS Missense_Mutation p.L413V 0.13 tolerated(0.49) benign(0.057) TCGA-GC-A4ZW-01 3 125731460 125731460 G C SLC41A3 Nonsense_Mutation p.S368* 0.08 TCGA-GC-A4ZW-01 3 12977817 12977817 C T IQSEC1 Silent p.V247V 0.17 TCGA-GC-A4ZW-01 3 130889626 130889626 G A NEK11 Missense_Mutation p.E432K 0.13 tolerated(0.2) benign(0.15) TCGA-GC-A4ZW-01 3 132241768 132241768 G C DNAJC13 Missense_Mutation p.E1924Q 0.18 deleterious(0) probably_damaging(0.977) TCGA-GC-A4ZW-01 3 132279947 132279947 C G ACAD11 Missense_Mutation p.E706Q 0.19 tolerated(0.2) benign(0.074) TCGA-GC-A4ZW-01 3 13417137 13417137 C G NUP210 Missense_Mutation p.G433A 0.08 deleterious(0.02) benign(0.242) TCGA-GC-A4ZW-01 3 136260988 136260988 G C STAG1 Missense_Mutation p.I148M 0.37 tolerated(0.14) benign(0.031) TCGA-GC-A4ZW-01 3 141678646 141678646 C G TFDP2 Missense_Mutation p.E307D 0.12 deleterious(0) possibly_damaging(0.499) TCGA-GC-A4ZW-01 3 142168397 142168397 G C ATR Missense_Mutation p.I2603M 0.42 deleterious(0) probably_damaging(0.986) TCGA-GC-A4ZW-01 3 151101647 151101647 T G MED12L Silent p.T1552T 0.30 TCGA-GC-A4ZW-01 3 151176495 151176495 C T IGSF10 Translation_Start_Site p.M1? 0.14 deleterious(0) probably_damaging(0.986) TCGA-GC-A4ZW-01 3 153994583 153994583 C G DHX36 Missense_Mutation p.E932Q 0.16 tolerated(0.38) benign(0.01) TCGA-GC-A4ZW-01 3 17052548 17052548 G C PLCL2 Missense_Mutation p.K444N 0.14 deleterious(0) probably_damaging(0.991) TCGA-GC-A4ZW-01 3 17052591 17052591 G A PLCL2 Missense_Mutation p.D459N 0.11 tolerated(0.13) possibly_damaging(0.53) TCGA-GC-A4ZW-01 3 170723816 170723816 G C SLC2A2 Missense_Mutation p.L231V 0.45 tolerated(0.07) benign(0.438) TCGA-GC-A4ZW-01 3 185407260 185407260 G C IGF2BP2 Missense_Mutation p.S187C 0.12 deleterious(0.02) benign(0.353) TCGA-GC-A4ZW-01 3 186915484 186915484 G C RTP1 Missense_Mutation p.D61H 0.07 tolerated(0.12) possibly_damaging(0.878) TCGA-GC-A4ZW-01 3 192973439 192973439 G A HRASLS Splice_Site p.X106_splice 0.29 TCGA-GC-A4ZW-01 3 194080453 194080453 G A LRRC15 Silent p.L446L 0.27 TCGA-GC-A4ZW-01 3 19432025 19432025 C T KCNH8 Silent p.I288I 0.14 TCGA-GC-A4ZW-01 3 196199387 196199387 G A RNF168 Missense_Mutation p.S340L 0.07 deleterious(0.03) benign(0.079) TCGA-GC-A4ZW-01 3 197476886 197476886 C A FYTTD1 Missense_Mutation p.S15Y 0.35 deleterious_low_confidence(0.05) benign(0.006) TCGA-GC-A4ZW-01 3 25470141 25470141 G C RARB 5'UTR 0.10 TCGA-GC-A4ZW-01 3 27760949 27760949 C T EOMES Missense_Mutation p.E354K 0.21 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 3 3067930 3067930 G A CNTN4 Missense_Mutation p.R544K 0.34 tolerated(1) benign(0.015) TCGA-GC-A4ZW-01 3 30769881 30769881 C T GADL1 Missense_Mutation p.M473I 0.12 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 3 36873556 36873556 G C TRANK1 Missense_Mutation p.I2462M 0.10 deleterious(0.05) benign(0.129) TCGA-GC-A4ZW-01 3 37544728 37544728 G T ITGA9 Silent p.L224L 0.53 TCGA-GC-A4ZW-01 3 38750990 38750990 G C SCN10A Missense_Mutation p.N1420K 0.10 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 3 39228753 39228753 G A XIRP1 Silent p.F728F 0.13 TCGA-GC-A4ZW-01 3 436397 436397 G A CHL1 Missense_Mutation p.G979E 0.12 tolerated(0.16) possibly_damaging(0.652) TCGA-GC-A4ZW-01 3 44683697 44683697 G C ZNF197 Missense_Mutation p.E359Q 0.11 tolerated(0.44) benign(0.035) TCGA-GC-A4ZW-01 3 4508672 4508672 G A SUMF1 Silent p.L86L 0.50 TCGA-GC-A4ZW-01 3 47456067 47456067 C T SCAP Missense_Mutation p.D1128N 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-GC-A4ZW-01 3 47619161 47619161 C T CSPG5 Missense_Mutation p.D119N 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-GC-A4ZW-01 3 48699002 48699002 C T CELSR3 Missense_Mutation p.E356K 0.14 deleterious(0) possibly_damaging(0.662) TCGA-GC-A4ZW-01 3 49155238 49155238 G C USP19 Silent p.L108L 0.37 TCGA-GC-A4ZW-01 3 49365230 49365230 C T USP4 Silent p.L83L 0.12 TCGA-GC-A4ZW-01 3 49662661 49662661 C G BSN Missense_Mutation p.Q160E 0.48 unknown(0) TCGA-GC-A4ZW-01 3 49662792 49662792 C G BSN Missense_Mutation p.F203L 0.41 unknown(0) TCGA-GC-A4ZW-01 3 49713808 49713808 C T APEH Intron 0.12 TCGA-GC-A4ZW-01 3 49760705 49760705 C G GMPPB Missense_Mutation p.E81Q 0.25 tolerated(0.33) benign(0.021) TCGA-GC-A4ZW-01 3 49847482 49847482 C G UBA7 Missense_Mutation p.A590P 0.10 deleterious(0) possibly_damaging(0.565) TCGA-GC-A4ZW-01 3 50374712 50374712 C T RASSF1 Intron 0.16 TCGA-GC-A4ZW-01 3 51669609 51669609 G A RAD54L2 Silent p.K381K 0.14 TCGA-GC-A4ZW-01 3 53905472 53905472 C G ACTR8 Missense_Mutation p.E452Q 0.18 tolerated(0.24) benign(0.048) TCGA-GC-A4ZW-01 3 58415954 58415954 C G PDHB Missense_Mutation p.E201Q 0.09 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 3 61975400 61975400 G C PTPRG Missense_Mutation p.E98Q 0.12 tolerated(0.56) possibly_damaging(0.866) TCGA-GC-A4ZW-01 3 67578579 67578579 T C SUCLG2 Missense_Mutation p.K132E 0.10 tolerated(0.67) benign(0.005) TCGA-GC-A4ZW-01 3 72799461 72799461 C G SHQ1 Missense_Mutation p.D570H 0.13 deleterious_low_confidence(0.05) benign(0.002) TCGA-GC-A4ZW-01 3 73024184 73024184 T C GXYLT2 Silent p.F402F 0.44 TCGA-GC-A4ZW-01 3 97806040 97806040 G C OR5AC2 Missense_Mutation p.K8N 0.20 tolerated(0.51) benign(0.258) TCGA-GC-A4ZW-01 3 98600579 98600579 C G DCBLD2 Missense_Mutation p.E80Q 0.07 deleterious(0.03) benign(0.219) TCGA-GC-A4ZW-01 4 101331484 101331484 C T EMCN Silent p.K260K 0.21 TCGA-GC-A4ZW-01 4 104070125 104070125 G A CENPE Missense_Mutation p.A1240V 0.25 benign(0.038) TCGA-GC-A4ZW-01 4 110908953 110908953 G C EGF Missense_Mutation p.E849Q 0.12 tolerated(0.32) benign(0.032) TCGA-GC-A4ZW-01 4 110972775 110972775 C A ELOVL6 Missense_Mutation p.V173L 0.38 deleterious(0) probably_damaging(0.986) TCGA-GC-A4ZW-01 4 123856949 123856949 G C SPATA5 Missense_Mutation p.E410Q 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-GC-A4ZW-01 4 126411869 126411869 C G FAT4 Missense_Mutation p.S4631W 0.19 probably_damaging(0.998) TCGA-GC-A4ZW-01 4 15709246 15709246 G A BST1 Nonsense_Mutation p.W143* 0.11 TCGA-GC-A4ZW-01 4 158284094 158284094 G C GRIA2 Missense_Mutation p.K850N 0.19 tolerated(0.48) benign(0.159) TCGA-GC-A4ZW-01 4 164272403 164272403 C A NPY5R Silent p.S326S 0.28 TCGA-GC-A4ZW-01 4 173150885 173150885 G A GALNTL6 Missense_Mutation p.E73K 0.15 tolerated(0.43) benign(0.004) TCGA-GC-A4ZW-01 4 175238502 175238502 G C CEP44 Intron 0.12 TCGA-GC-A4ZW-01 4 177113827 177113827 G C SPATA4 Silent p.L213L 0.20 TCGA-GC-A4ZW-01 4 186085258 186085258 G A KIAA1430 Missense_Mutation p.R466C 0.08 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 4 187201636 187201636 G A F11 Missense_Mutation p.C346Y 0.17 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 4 187540255 187540255 G A FAT1 Silent p.N2495N 0.43 TCGA-GC-A4ZW-01 4 2632881 2632881 C G FAM193A Silent p.T50T 0.07 TCGA-GC-A4ZW-01 4 27010053 27010053 G A STIM2 Missense_Mutation p.E393K 0.41 deleterious(0) probably_damaging(0.991) TCGA-GC-A4ZW-01 4 2701919 2701919 G A FAM193A Silent p.L1049L 0.10 TCGA-GC-A4ZW-01 4 2826391 2826391 G C SH3BP2 Missense_Mutation p.K154N 0.14 deleterious(0) possibly_damaging(0.548) TCGA-GC-A4ZW-01 4 36179567 36179567 G A ARAP2 Missense_Mutation p.S580L 0.18 tolerated(0.08) benign(0.005) TCGA-GC-A4ZW-01 4 36230262 36230262 G A ARAP2 Silent p.L283L 0.20 TCGA-GC-A4ZW-01 4 39274644 39274644 C G WDR19 Silent p.L1176L 0.27 TCGA-GC-A4ZW-01 4 39436095 39436095 G C KLB Missense_Mutation p.R364T 0.19 deleterious(0) possibly_damaging(0.477) TCGA-GC-A4ZW-01 4 39471657 39471657 G A LIAS Silent p.R252R 0.25 TCGA-GC-A4ZW-01 4 41648563 41648563 G C LIMCH1 Missense_Mutation p.E440Q 0.20 tolerated(0.1) possibly_damaging(0.756) TCGA-GC-A4ZW-01 4 41648853 41648853 G C LIMCH1 Silent p.L536L 0.15 TCGA-GC-A4ZW-01 4 4249378 4249378 G C TMEM128 5'UTR 0.18 TCGA-GC-A4ZW-01 4 46737255 46737255 G A COX7B2 5'UTR 0.18 TCGA-GC-A4ZW-01 4 47625738 47625738 C T CORIN Missense_Mutation p.R797Q 0.17 deleterious(0.02) possibly_damaging(0.871) TCGA-GC-A4ZW-01 4 48152953 48152953 C G TEC Missense_Mutation p.E267Q 0.17 deleterious(0) probably_damaging(0.971) TCGA-GC-A4ZW-01 4 515035 515035 G A PIGG Missense_Mutation p.M435I 0.25 deleterious(0) possibly_damaging(0.83) TCGA-GC-A4ZW-01 4 52951098 52951098 C T SPATA18 Missense_Mutation p.S499F 0.10 deleterious(0.01) possibly_damaging(0.447) TCGA-GC-A4ZW-01 4 5624371 5624371 C G EVC2 Missense_Mutation p.R798S 0.71 deleterious(0.01) possibly_damaging(0.678) TCGA-GC-A4ZW-01 4 5642526 5642526 C G EVC2 Silent p.L395L 0.08 TCGA-GC-A4ZW-01 4 57265347 57265347 C G PPAT Missense_Mutation p.E412Q 0.22 deleterious(0.02) probably_damaging(0.975) TCGA-GC-A4ZW-01 4 68374620 68374620 G C CENPC Missense_Mutation p.H606D 0.13 deleterious(0.01) benign(0.068) TCGA-GC-A4ZW-01 4 69519769 69519769 G C UGT2B15 Silent p.V433V 0.14 TCGA-GC-A4ZW-01 4 72222782 72222782 A G SLC4A4 Missense_Mutation p.K203R 0.64 tolerated(0.45) benign(0.044) TCGA-GC-A4ZW-01 4 74012519 74012519 C T ANKRD17 Missense_Mutation p.D611N 0.15 probably_damaging(1) TCGA-GC-A4ZW-01 4 7435478 7435478 C A PSAPL1 Missense_Mutation p.D377Y 0.10 deleterious(0.03) benign(0.059) TCGA-GC-A4ZW-01 4 7840284 7840284 G C AFAP1 Silent p.V231V 0.16 TCGA-GC-A4ZW-01 4 80246882 80246882 C T NAA11 Silent p.G50G 0.38 TCGA-GC-A4ZW-01 4 83778193 83778193 G C SEC31A Missense_Mutation p.A598G 0.11 deleterious(0.01) possibly_damaging(0.859) TCGA-GC-A4ZW-01 4 83839597 83839597 C G THAP9 Silent p.L744L 0.38 TCGA-GC-A4ZW-01 4 85569849 85569849 G C CDS1 3'UTR 0.48 TCGA-GC-A4ZW-01 4 85599346 85599346 C G WDFY3 Missense_Mutation p.E3412Q 0.11 tolerated(0.19) possibly_damaging(0.792) TCGA-GC-A4ZW-01 4 85731208 85731208 G C WDFY3 Nonsense_Mutation p.S726* 0.19 TCGA-GC-A4ZW-01 4 90844387 90844387 G C MMRN1 Missense_Mutation p.A307P 0.13 tolerated(0.33) benign(0.004) TCGA-GC-A4ZW-01 4 90849086 90849086 G C MMRN1 Missense_Mutation p.D366H 0.17 deleterious(0) probably_damaging(0.985) TCGA-GC-A4ZW-01 4 9828165 9828165 G C SLC2A9 Missense_Mutation p.I493M 0.76 deleterious(0.02) benign(0.038) TCGA-GC-A4ZW-01 5 118970176 118970176 G A FAM170A Missense_Mutation p.E245K 0.19 tolerated(0.11) benign(0.262) TCGA-GC-A4ZW-01 5 124036889 124036889 G A ZNF608 Missense_Mutation p.S327F 0.19 tolerated(0.73) probably_damaging(0.967) TCGA-GC-A4ZW-01 5 125918606 125918606 C G ALDH7A1 Missense_Mutation p.D152H 0.94 deleterious(0.02) probably_damaging(0.925) TCGA-GC-A4ZW-01 5 132235323 132235323 C G AFF4 Missense_Mutation p.D382H 0.17 deleterious(0) probably_damaging(0.95) TCGA-GC-A4ZW-01 5 13714605 13714605 G C DNAH5 Missense_Mutation p.S4345C 0.08 possibly_damaging(0.902) TCGA-GC-A4ZW-01 5 137722044 137722044 G T KDM3B Nonsense_Mutation p.E372* 0.83 TCGA-GC-A4ZW-01 5 139838375 139838375 G A ANKHD1 Missense_Mutation p.E470K 0.34 unknown(0) TCGA-GC-A4ZW-01 5 140166176 140166176 G A PCDHA1 Missense_Mutation p.E101K 0.27 tolerated_low_confidence(0.1) benign(0.137) TCGA-GC-A4ZW-01 5 140480322 140480322 C G PCDHB3 Nonsense_Mutation p.S30* 0.31 TCGA-GC-A4ZW-01 5 140745697 140745697 G C PCDHGA5 Missense_Mutation p.Q600H 0.21 deleterious_low_confidence(0) benign(0.443) TCGA-GC-A4ZW-01 5 153029930 153029930 G A GRIA1 Silent p.E177E 0.24 TCGA-GC-A4ZW-01 5 154287364 154287364 C G GEMIN5 Missense_Mutation p.E728Q 0.19 tolerated(0.14) probably_damaging(0.911) TCGA-GC-A4ZW-01 5 1589442 1589442 C A SDHAP3 RNA 0.08 TCGA-GC-A4ZW-01 5 16453259 16453259 C T ZNF622 Missense_Mutation p.R390K 0.06 tolerated(0.35) benign(0.009) TCGA-GC-A4ZW-01 5 167489111 167489111 A C TENM2 Missense_Mutation p.E452D 0.25 tolerated(1) benign(0.012) TCGA-GC-A4ZW-01 5 167826567 167826567 G A WWC1 Silent p.L195L 0.09 TCGA-GC-A4ZW-01 5 170736484 170736484 G A TLX3 Missense_Mutation p.D39N 0.25 deleterious(0.05) benign(0.068) TCGA-GC-A4ZW-01 5 176761333 176761333 C G LMAN2 Missense_Mutation p.D288H 0.14 deleterious(0.04) probably_damaging(0.994) TCGA-GC-A4ZW-01 5 176882110 176882110 C G PRR7 Missense_Mutation p.F14L 0.13 deleterious(0) benign(0.126) TCGA-GC-A4ZW-01 5 178140578 178140578 C G ZNF354A Missense_Mutation p.D101H 0.12 deleterious(0.01) possibly_damaging(0.738) TCGA-GC-A4ZW-01 5 180432389 180432389 G A BTNL3 Silent p.L306L 0.13 TCGA-GC-A4ZW-01 5 33461389 33461389 C G TARS Missense_Mutation p.Q547E 0.06 tolerated(0.76) benign(0.002) TCGA-GC-A4ZW-01 5 34824433 34824433 C G RAI14 Nonsense_Mutation p.S832* 0.04 TCGA-GC-A4ZW-01 5 35774119 35774119 T G SPEF2 Missense_Mutation p.F1358L 0.12 tolerated(0.64) benign(0.004) TCGA-GC-A4ZW-01 5 37816056 37816056 C G GDNF Missense_Mutation p.Q128H 0.11 tolerated(0.08) benign(0.001) TCGA-GC-A4ZW-01 5 38982131 38982131 C G RICTOR Missense_Mutation p.Q197H 0.05 tolerated(0.16) benign(0.006) TCGA-GC-A4ZW-01 5 40681884 40681884 C T PTGER4 Silent p.I263I 0.05 TCGA-GC-A4ZW-01 5 41904491 41904491 G T C5orf51 Missense_Mutation p.V8L 0.05 tolerated_low_confidence(0.22) unknown(0) TCGA-GC-A4ZW-01 5 45267209 45267209 C G HCN1 Missense_Mutation p.D589H 0.05 deleterious(0) probably_damaging(0.996) TCGA-GC-A4ZW-01 5 64859272 64859272 G C PPWD1 Missense_Mutation p.E45D 0.23 tolerated(1) benign(0) TCGA-GC-A4ZW-01 5 65054608 65054608 G C NLN Missense_Mutation p.E86Q 0.14 deleterious(0.02) benign(0.073) TCGA-GC-A4ZW-01 5 66459603 66459603 G A MAST4 Silent p.L1532L 0.33 TCGA-GC-A4ZW-01 5 68669879 68669879 G A RAD17 Missense_Mutation p.E89K 0.13 deleterious(0) possibly_damaging(0.9) TCGA-GC-A4ZW-01 5 71494697 71494697 G A MAP1B Missense_Mutation p.D1839N 0.93 possibly_damaging(0.844) TCGA-GC-A4ZW-01 5 77437073 77437073 G A AP3B1 Missense_Mutation p.P515L 0.36 deleterious(0) possibly_damaging(0.888) TCGA-GC-A4ZW-01 5 7869216 7869216 C T MTRR 5'Flank 0.43 TCGA-GC-A4ZW-01 5 82500686 82500686 G A XRCC4 Missense_Mutation p.E231K 0.33 tolerated(0.19) probably_damaging(0.973) TCGA-GC-A4ZW-01 5 86633794 86633794 C A RASA1 Missense_Mutation p.F301L 0.93 deleterious(0.01) benign(0.253) TCGA-GC-A4ZW-01 5 9044575 9044575 G A SEMA5A Silent p.V1005V 0.24 TCGA-GC-A4ZW-01 6 101098465 101098465 T A ASCC3 Silent p.R1067R 0.21 TCGA-GC-A4ZW-01 6 108840982 108840982 G C LACE1 Missense_Mutation p.R429T 0.22 deleterious(0) possibly_damaging(0.507) TCGA-GC-A4ZW-01 6 111695912 111695912 C G REV3L Missense_Mutation p.E1216Q 0.19 tolerated_low_confidence(0.11) benign(0.216) TCGA-GC-A4ZW-01 6 122720816 122720816 C A HSF2 5'UTR 0.73 TCGA-GC-A4ZW-01 6 129573402 129573402 A G LAMA2 Silent p.L686L 0.38 TCGA-GC-A4ZW-01 6 132938730 132938730 G C TAAR2 Missense_Mutation p.F205L 0.19 tolerated(0.09) probably_damaging(0.998) TCGA-GC-A4ZW-01 6 132966807 132966807 G C TAAR1 Missense_Mutation p.F112L 0.12 tolerated(0.23) benign(0.014) TCGA-GC-A4ZW-01 6 132967017 132967017 C G TAAR1 Silent p.L42L 0.11 TCGA-GC-A4ZW-01 6 133802729 133802729 G A EYA4 Missense_Mutation p.D367N 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-GC-A4ZW-01 6 136597038 136597038 G A BCLAF1 Missense_Mutation p.S542F 0.05 deleterious(0.01) possibly_damaging(0.683) TCGA-GC-A4ZW-01 6 136934304 136934304 C G MAP3K5 Missense_Mutation p.G790A 0.09 deleterious(0.02) possibly_damaging(0.867) TCGA-GC-A4ZW-01 6 143091765 143091765 C G HIVEP2 Missense_Mutation p.E1371Q 0.13 tolerated(0.1) probably_damaging(0.959) TCGA-GC-A4ZW-01 6 144086549 144086549 C G PHACTR2 Missense_Mutation p.D282E 0.34 deleterious_low_confidence(0.03) benign(0.002) TCGA-GC-A4ZW-01 6 146350641 146350641 C T GRM1 5'UTR 0.15 TCGA-GC-A4ZW-01 6 146350988 146350988 C G GRM1 Missense_Mutation p.S112C 0.24 deleterious(0) probably_damaging(0.989) TCGA-GC-A4ZW-01 6 149919425 149919425 C T KATNA1 Missense_Mutation p.R317Q 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-GC-A4ZW-01 6 150067599 150067599 C G NUP43 Missense_Mutation p.Q11H 0.32 tolerated(0.17) benign(0.002) TCGA-GC-A4ZW-01 6 150067629 150067629 C A NUP43 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.055) TCGA-GC-A4ZW-01 6 152454591 152454591 G A SYNE1 Silent p.L8607L 0.14 TCGA-GC-A4ZW-01 6 152702423 152702423 C G SYNE1 Missense_Mutation p.Q2909H 0.15 benign(0.429) TCGA-GC-A4ZW-01 6 155485603 155485603 C T TIAM2 Missense_Mutation p.R695C 0.91 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 6 158922935 158922935 C G TULP4 Missense_Mutation p.S747C 0.16 deleterious_low_confidence(0) benign(0.285) TCGA-GC-A4ZW-01 6 161054860 161054860 G A LPA Missense_Mutation p.T387I 0.16 deleterious(0.01) possibly_damaging(0.656) TCGA-GC-A4ZW-01 6 169648566 169648566 C T THBS2 Silent p.A185A 0.61 TCGA-GC-A4ZW-01 6 17541312 17541312 C T CAP2 Missense_Mutation p.S312F 0.17 deleterious(0.01) benign(0.396) TCGA-GC-A4ZW-01 6 25551188 25551188 G A LRRC16A Silent p.V793V 0.19 TCGA-GC-A4ZW-01 6 25606390 25606390 C T LRRC16A Missense_Mutation p.R1246W 0.09 deleterious_low_confidence(0) benign(0.005) TCGA-GC-A4ZW-01 6 26031935 26031935 C G HIST1H3B Silent p.V118V 0.13 TCGA-GC-A4ZW-01 6 27833238 27833238 C A HIST1H2AL Missense_Mutation p.R36S 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.71) TCGA-GC-A4ZW-01 6 27835035 27835035 C G HIST1H1B Silent p.V91V 0.17 TCGA-GC-A4ZW-01 6 28269882 28269882 G A PGBD1 Missense_Mutation p.V751M 0.11 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 6 30029247 30029247 G C ZNRD1 5'UTR 0.11 TCGA-GC-A4ZW-01 6 31996608 31996608 G A C4B Silent p.V1123V 0.69 TCGA-GC-A4ZW-01 6 33371895 33371895 G C KIFC1 Missense_Mutation p.E249Q 0.22 tolerated(0.12) benign(0.004) TCGA-GC-A4ZW-01 6 35088821 35088821 C G TCP11 Missense_Mutation p.G207R 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-GC-A4ZW-01 6 36181891 36181891 G A BRPF3 Missense_Mutation p.R906K 0.20 tolerated(0.89) benign(0.013) TCGA-GC-A4ZW-01 6 4069006 4069006 G C FAM217A Missense_Mutation p.S484C 0.35 tolerated(0.26) benign(0.002) TCGA-GC-A4ZW-01 6 43403533 43403533 C T ABCC10 Silent p.L551L 0.12 TCGA-GC-A4ZW-01 6 44147766 44147766 C T CAPN11 Silent p.F502F 0.17 TCGA-GC-A4ZW-01 6 46133169 46133169 C T ENPP5 Missense_Mutation p.D321N 0.13 deleterious(0) probably_damaging(0.96) TCGA-GC-A4ZW-01 6 52658965 52658965 G C GSTA1 Missense_Mutation p.I124M 0.51 tolerated(0.16) possibly_damaging(0.674) TCGA-GC-A4ZW-01 6 53409299 53409299 C T GCLC Missense_Mutation p.D49N 0.24 deleterious(0) probably_damaging(0.953) TCGA-GC-A4ZW-01 6 7559547 7559547 G C DSP Missense_Mutation p.G171R 0.10 probably_damaging(0.917) TCGA-GC-A4ZW-01 6 7585074 7585074 C G DSP Missense_Mutation p.Q2527E 0.11 probably_damaging(0.966) TCGA-GC-A4ZW-01 6 7585509 7585509 C T DSP Nonsense_Mutation p.Q2672* 0.12 TCGA-GC-A4ZW-01 6 84375296 84375296 C G SNAP91 Missense_Mutation p.L45F 0.21 deleterious(0) unknown(0) TCGA-GC-A4ZW-01 6 97247138 97247138 G C GPR63 Missense_Mutation p.S157C 0.21 deleterious(0) probably_damaging(0.996) TCGA-GC-A4ZW-01 6 97580609 97580609 C G KLHL32 Missense_Mutation p.L563V 0.14 tolerated(0.66) benign(0.111) TCGA-GC-A4ZW-01 6 99374674 99374674 T C FBXL4 Missense_Mutation p.H64R 0.92 deleterious(0.05) probably_damaging(0.996) TCGA-GC-A4ZW-01 7 102212929 102212929 C G POLR2J3 Missense_Mutation p.E14Q 0.08 deleterious(0.02) benign(0.072) TCGA-GC-A4ZW-01 7 107557275 107557275 C G DLD Missense_Mutation p.I304M 0.15 tolerated(0.06) benign(0.104) TCGA-GC-A4ZW-01 7 116399470 116399470 G C MET Missense_Mutation p.G782R 0.14 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 7 11676229 11676229 C G THSD7A Missense_Mutation p.E184Q 0.11 deleterious(0.02) possibly_damaging(0.574) TCGA-GC-A4ZW-01 7 127637753 127637753 C T SND1 Intron 0.17 TCGA-GC-A4ZW-01 7 128033062 128033062 C T IMPDH1 Silent p.%3D 0.11 TCGA-GC-A4ZW-01 7 129019538 129019538 T A AHCYL2 Silent p.R141R 0.27 TCGA-GC-A4ZW-01 7 129658348 129658348 T C ZC3HC1 3'UTR 0.62 TCGA-GC-A4ZW-01 7 134261135 134261135 C G AKR1B15 Missense_Mutation p.P260A 0.26 tolerated(0.05) benign(0.092) TCGA-GC-A4ZW-01 7 138764429 138764429 G C ZC3HAV1 Missense_Mutation p.Q420E 0.23 tolerated(0.27) possibly_damaging(0.585) TCGA-GC-A4ZW-01 7 142919585 142919585 C G TAS2R40 Missense_Mutation p.I138M 0.24 deleterious(0.03) possibly_damaging(0.881) TCGA-GC-A4ZW-01 7 143020410 143020410 C T CLCN1 Silent p.F235F 0.53 TCGA-GC-A4ZW-01 7 149129565 149129565 C T ZNF777 Missense_Mutation p.G600R 0.23 tolerated(0.39) benign(0.006) TCGA-GC-A4ZW-01 7 149174041 149174041 C T ZNF746 Silent p.L270L 0.19 TCGA-GC-A4ZW-01 7 149495179 149495179 G A SSPO RNA 0.28 TCGA-GC-A4ZW-01 7 2578203 2578203 C G BRAT1 Missense_Mutation p.E656Q 0.18 deleterious(0) probably_damaging(0.914) TCGA-GC-A4ZW-01 7 27935004 27935004 C T JAZF1 Missense_Mutation p.E74K 0.23 tolerated(0.47) benign(0.015) TCGA-GC-A4ZW-01 7 29135775 29135775 G C CPVL Missense_Mutation p.S116C 0.16 deleterious(0.01) probably_damaging(1) TCGA-GC-A4ZW-01 7 31013693 31013693 C T GHRHR Silent p.L231L 0.31 TCGA-GC-A4ZW-01 7 43917456 43917456 G A URGCP Nonsense_Mutation p.R536* 0.13 TCGA-GC-A4ZW-01 7 44880559 44880559 C T H2AFV Missense_Mutation p.G45E 0.18 tolerated(0.08) probably_damaging(0.975) TCGA-GC-A4ZW-01 7 47408186 47408186 G C TNS3 Missense_Mutation p.P686R 0.13 tolerated(0.21) benign(0.067) TCGA-GC-A4ZW-01 7 47408649 47408649 C G TNS3 Missense_Mutation p.D532H 0.25 deleterious(0) possibly_damaging(0.896) TCGA-GC-A4ZW-01 7 5529001 5529001 C G FBXL18 Intron 0.38 TCGA-GC-A4ZW-01 7 5568089 5568089 C G ACTB Missense_Mutation p.V209L 0.09 deleterious_low_confidence(0.02) benign(0.018) TCGA-GC-A4ZW-01 7 70255920 70255920 C T AUTS2 Silent p.L1240L 0.33 TCGA-GC-A4ZW-01 7 72865262 72865262 C T BAZ1B Missense_Mutation p.M1165I 0.12 deleterious(0.02) probably_damaging(0.958) TCGA-GC-A4ZW-01 7 7613375 7613375 C G MIOS Silent p.L423L 0.11 TCGA-GC-A4ZW-01 7 810140 810140 G T HEATR2 Missense_Mutation p.V606L 0.25 tolerated(0.13) benign(0.003) TCGA-GC-A4ZW-01 7 888141 888141 C G SUN1 Intron 0.10 TCGA-GC-A4ZW-01 7 894628 894628 G A SUN1 Silent p.L445L 0.24 TCGA-GC-A4ZW-01 7 92760908 92760908 G A SAMD9L Silent p.F1459F 0.67 TCGA-GC-A4ZW-01 7 99447268 99447268 G A CYP3A43 Missense_Mutation p.M207I 0.25 tolerated(1) benign(0) TCGA-GC-A4ZW-01 8 10677744 10677744 C G PINX1 Missense_Mutation p.D144H 0.12 deleterious(0.04) probably_damaging(0.971) TCGA-GC-A4ZW-01 8 110502249 110502249 C G PKHD1L1 Missense_Mutation p.P3317A 0.23 tolerated(0.05) probably_damaging(0.958) TCGA-GC-A4ZW-01 8 120940688 120940688 C G DEPTOR Silent p.L57L 0.11 TCGA-GC-A4ZW-01 8 125990000 125990000 C G ZNF572 Missense_Mutation p.S497C 0.13 tolerated(1) benign(0.006) TCGA-GC-A4ZW-01 8 125990078 125990078 C G ZNF572 Missense_Mutation p.S523C 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-GC-A4ZW-01 8 127569397 127569397 C G FAM84B Missense_Mutation p.E80Q 0.23 deleterious(0.01) probably_damaging(0.97) TCGA-GC-A4ZW-01 8 132002746 132002746 C G ADCY8 Missense_Mutation p.G335R 0.11 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 8 143561062 143561062 G A BAI1 Missense_Mutation p.E579K 0.09 deleterious(0) possibly_damaging(0.621) TCGA-GC-A4ZW-01 8 144897413 144897413 C G SCRIB Missense_Mutation p.D44H 0.21 probably_damaging(1) TCGA-GC-A4ZW-01 8 145150898 145150898 C T CYC1 Missense_Mutation p.H98Y 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-GC-A4ZW-01 8 18662288 18662288 G A PSD3 Silent p.A585A 0.27 TCGA-GC-A4ZW-01 8 28574146 28574146 C T EXTL3 Silent p.L190L 0.09 TCGA-GC-A4ZW-01 8 30210598 30210598 C T TUBBP1 RNA 0.55 TCGA-GC-A4ZW-01 8 38178687 38178687 G A WHSC1L1 Missense_Mutation p.S571L 0.31 tolerated(0.08) benign(0.002) TCGA-GC-A4ZW-01 8 39777632 39777632 G A IDO1 Missense_Mutation p.E146K 0.39 tolerated(0.14) benign(0.006) TCGA-GC-A4ZW-01 8 56663657 56663657 C G TMEM68 Missense_Mutation p.E185Q 0.10 tolerated(0.41) benign(0.222) TCGA-GC-A4ZW-01 8 59343097 59343097 G T UBXN2B Nonsense_Mutation p.E70* 0.11 TCGA-GC-A4ZW-01 8 59343122 59343122 G A UBXN2B Missense_Mutation p.R78Q 0.11 tolerated(0.17) benign(0.003) TCGA-GC-A4ZW-01 8 59343169 59343169 G T UBXN2B Nonsense_Mutation p.E94* 0.17 TCGA-GC-A4ZW-01 8 59343217 59343217 G C UBXN2B Missense_Mutation p.D110H 0.15 tolerated(0.11) benign(0.003) TCGA-GC-A4ZW-01 8 59409330 59409330 G C CYP7A1 Silent p.L247L 0.16 TCGA-GC-A4ZW-01 8 67361110 67361110 G A ADHFE1 Silent p.S213S 0.14 TCGA-GC-A4ZW-01 8 68070768 68070768 G C CSPP1 Missense_Mutation p.Q771H 0.17 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 8 73480388 73480388 G C KCNB2 Missense_Mutation p.R140T 0.18 deleterious(0) benign(0.342) TCGA-GC-A4ZW-01 8 73921202 73921202 G C TERF1 Missense_Mutation p.Q27H 0.21 tolerated_low_confidence(0.2) benign(0.109) TCGA-GC-A4ZW-01 8 81599526 81599526 C T ZNF704 Missense_Mutation p.D165N 0.33 tolerated(0.08) possibly_damaging(0.732) TCGA-GC-A4ZW-01 8 82615022 82615022 C G ZFAND1 Missense_Mutation p.D239H 0.12 deleterious(0.03) possibly_damaging(0.491) TCGA-GC-A4ZW-01 8 98973656 98973656 G C MATN2 Missense_Mutation p.E286Q 0.19 tolerated(0.52) benign(0.035) TCGA-GC-A4ZW-01 9 103271335 103271335 C G TMEFF1 Missense_Mutation p.Q119E 0.10 tolerated(0.08) benign(0.089) TCGA-GC-A4ZW-01 9 104124730 104124730 C G BAAT Missense_Mutation p.D413H 0.12 tolerated(0.12) benign(0.428) TCGA-GC-A4ZW-01 9 106874033 106874033 C G SMC2 Missense_Mutation p.L398V 0.15 deleterious(0) benign(0.158) TCGA-GC-A4ZW-01 9 107367774 107367774 G A OR13C2 Silent p.L45L 0.24 TCGA-GC-A4ZW-01 9 108425057 108425057 G C TAL2 Missense_Mutation p.E94Q 0.14 tolerated(0.44) benign(0.008) TCGA-GC-A4ZW-01 9 111693363 111693363 G C IKBKAP Missense_Mutation p.Q22E 0.23 deleterious(0.03) possibly_damaging(0.626) TCGA-GC-A4ZW-01 9 114247018 114247018 G C KIAA0368 Nonsense_Mutation p.S3* 0.17 TCGA-GC-A4ZW-01 9 119202937 119202937 C T ASTN2 Missense_Mutation p.E1194K 0.65 deleterious(0) unknown(0) TCGA-GC-A4ZW-01 9 125423939 125423939 C G OR1L1 5'Flank 0.31 TCGA-GC-A4ZW-01 9 126777640 126777640 C T LHX2 Missense_Mutation p.A188V 0.12 tolerated(0.22) benign(0.054) TCGA-GC-A4ZW-01 9 130943036 130943036 C G CIZ1 Missense_Mutation p.E216Q 0.16 tolerated(0.17) probably_damaging(0.926) TCGA-GC-A4ZW-01 9 131022917 131022917 C G GOLGA2 Missense_Mutation p.E502Q 0.21 tolerated(0.45) benign(0.006) TCGA-GC-A4ZW-01 9 131671435 131671435 G A LRRC8A Silent p.L664L 0.20 TCGA-GC-A4ZW-01 9 133769041 133769041 G A QRFP Missense_Mutation p.S62L 0.15 tolerated(0.07) benign(0.006) TCGA-GC-A4ZW-01 9 135771553 135771553 G C TSC1 3'UTR 0.08 TCGA-GC-A4ZW-01 9 140729250 140729250 G C EHMT1 Missense_Mutation p.D1248H 0.08 deleterious(0.03) probably_damaging(0.934) TCGA-GC-A4ZW-01 9 15433629 15433629 G C SNAPC3 Missense_Mutation p.E158Q 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-GC-A4ZW-01 9 2641422 2641422 C G VLDLR Missense_Mutation p.S124C 0.90 tolerated(0.05) probably_damaging(0.976) TCGA-GC-A4ZW-01 9 312092 312092 G C DOCK8 Missense_Mutation p.E223Q 0.11 deleterious(0.02) benign(0.341) TCGA-GC-A4ZW-01 9 32635549 32635549 C G TAF1L Missense_Mutation p.R10T 0.18 tolerated_low_confidence(0.67) benign(0.008) TCGA-GC-A4ZW-01 9 35724034 35724034 C G TLN1 Missense_Mutation p.D233H 0.08 deleterious(0) probably_damaging(0.999) TCGA-GC-A4ZW-01 9 37126387 37126387 G A ZCCHC7 Missense_Mutation p.E20K 0.07 tolerated(0.05) possibly_damaging(0.772) TCGA-GC-A4ZW-01 9 38411458 38411458 G A IGFBPL1 Missense_Mutation p.T259M 0.04 tolerated(0.08) benign(0.082) TCGA-GC-A4ZW-01 9 72833498 72833498 G C MAMDC2 Missense_Mutation p.E633Q 0.12 tolerated(0.2) benign(0.048) TCGA-GC-A4ZW-01 9 77431881 77431881 C T TRPM6 Splice_Site p.X379_splice 0.54 TCGA-GC-A4ZW-01 9 78686775 78686775 C T PCSK5 Silent p.A285A 0.17 TCGA-GC-A4ZW-01 9 78808202 78808202 G C PCSK5 Intron 0.14 TCGA-GC-A4ZW-01 9 85905539 85905539 C T FRMD3 Missense_Mutation p.E392K 0.23 tolerated(0.67) probably_damaging(0.985) TCGA-GC-A4ZW-01 9 96233584 96233584 C T FAM120A Silent p.L212L 0.17 TCGA-GC-A4ZW-01 X 100608277 100608277 C T BTK Missense_Mutation p.E605K 0.28 deleterious(0.01) probably_damaging(0.949) TCGA-GC-A4ZW-01 X 101576785 101576785 C T NXF2 Silent p.F427F 0.45 TCGA-GC-A4ZW-01 X 101909386 101909386 C G GPRASP1 Missense_Mutation p.S182C 0.25 tolerated(0.09) possibly_damaging(0.76) TCGA-GC-A4ZW-01 X 107977881 107977881 C A IRS4 Missense_Mutation p.G565V 0.20 deleterious_low_confidence(0) unknown(0) TCGA-GC-A4ZW-01 X 119249793 119249793 G A RHOXF1 5'UTR 0.29 TCGA-GC-A4ZW-01 X 120182489 120182489 G C GLUD2 Missense_Mutation p.M317I 0.27 tolerated(0.16) benign(0.418) TCGA-GC-A4ZW-01 X 128640093 128640093 G C SMARCA1 Silent p.L354L 0.34 TCGA-GC-A4ZW-01 X 129203380 129203380 G A ELF4 Missense_Mutation p.S361F 0.92 deleterious(0.02) possibly_damaging(0.863) TCGA-GC-A4ZW-01 X 134166705 134166705 C G FAM127A Missense_Mutation p.L98V 0.05 tolerated(0.41) benign(0.019) TCGA-GC-A4ZW-01 X 134424945 134424945 G A ZNF75D Silent p.V271V 0.04 TCGA-GC-A4ZW-01 X 134428049 134428049 C T ZNF75D Silent p.L6L 0.04 TCGA-GC-A4ZW-01 X 134713851 134713851 C G DDX26B Missense_Mutation p.S716C 0.04 tolerated(0.06) benign(0.319) TCGA-GC-A4ZW-01 X 140966977 140966977 C G MAGEC3 Nonsense_Mutation p.S92* 0.17 TCGA-GC-A4ZW-01 X 140993266 140993266 C T MAGEC1 Missense_Mutation p.P26S 0.98 tolerated_low_confidence(0.09) possibly_damaging(0.641) TCGA-GC-A4ZW-01 X 140994917 140994917 C T MAGEC1 Missense_Mutation p.S576F 0.05 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-GC-A4ZW-01 X 148582500 148582500 C G IDS Missense_Mutation p.E163Q 0.11 tolerated(0.26) benign(0.377) TCGA-GC-A4ZW-01 X 151533051 151533051 G A GABRA3 5'UTR 0.19 TCGA-GC-A4ZW-01 X 151818329 151818329 G C GABRQ Silent p.V245V 0.11 TCGA-GC-A4ZW-01 X 152936571 152936571 T C PNCK Missense_Mutation p.E313G 0.17 deleterious(0) probably_damaging(0.998) TCGA-GC-A4ZW-01 X 153735152 153735152 G A FAM3A Missense_Mutation p.T228M 0.20 tolerated_low_confidence(0.14) benign(0.004) TCGA-GC-A4ZW-01 X 154132676 154132676 C T F8 Missense_Mutation p.E1904K 0.14 deleterious(0) probably_damaging(1) TCGA-GC-A4ZW-01 X 207413 207413 C T PLCXD1 Silent p.V121V 0.09 TCGA-GC-A4ZW-01 X 37028951 37028951 A G FAM47C Missense_Mutation p.H823R 0.91 tolerated(0.05) benign(0.113) TCGA-GC-A4ZW-01 X 44920636 44920636 C G KDM6A Nonsense_Mutation p.S466* 0.67 TCGA-GC-A4ZW-01 X 46541831 46541831 C T SLC9A7 Silent p.L155L 0.29 TCGA-GC-A4ZW-01 X 48935515 48935515 C G WDR45 Missense_Mutation p.L37F 0.17 deleterious(0) benign(0.283) TCGA-GC-A4ZW-01 X 54953479 54953479 G A TRO Silent p.V568V 0.94 TCGA-GC-A4ZW-01 X 57162619 57162619 C T SPIN2A Missense_Mutation p.E138K 0.25 deleterious(0.03) benign(0.14) TCGA-GC-A4ZW-01 X 68060224 68060224 C T EFNB1 Silent p.I256I 0.83 TCGA-GC-A6I1-01 10 121259672 121259672 C G RGS10 Missense_Mutation p.D167H 0.28 deleterious(0) benign(0.435) TCGA-GC-A6I1-01 10 121595128 121595128 G A MCMBP Missense_Mutation p.S546F 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-GC-A6I1-01 10 129913315 129913315 C T MKI67 Missense_Mutation p.E453K 0.24 deleterious(0.01) possibly_damaging(0.815) TCGA-GC-A6I1-01 10 29818752 29818752 C A SVIL Nonsense_Mutation p.E710* 0.47 TCGA-GC-A6I1-01 10 50819710 50819710 C T SLC18A3 Silent p.L308L 0.39 TCGA-GC-A6I1-01 10 50820030 50820030 C G SLC18A3 Nonsense_Mutation p.S415* 0.36 TCGA-GC-A6I1-01 10 70136662 70136662 G A RUFY2 Missense_Mutation p.L460F 0.33 deleterious(0.04) benign(0.077) TCGA-GC-A6I1-01 10 70856908 70856908 C T SRGN Missense_Mutation p.L50F 0.35 deleterious(0) benign(0.035) TCGA-GC-A6I1-01 10 71128327 71128327 G A HK1 Silent p.A181A 0.13 TCGA-GC-A6I1-01 10 77818512 77818512 G T C10orf11 Nonsense_Mutation p.G135* 0.05 TCGA-GC-A6I1-01 11 100909902 100909902 T C PGR Missense_Mutation p.Q916R 0.26 deleterious(0) probably_damaging(0.99) TCGA-GC-A6I1-01 11 110477371 110477371 G C ARHGAP20 Missense_Mutation p.P293R 0.34 tolerated(0.13) possibly_damaging(0.456) TCGA-GC-A6I1-01 11 111784386 111784386 C T HSPB2 Missense_Mutation p.R106C 0.33 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I1-01 11 118342573 118342573 C G KMT2A Missense_Mutation p.I233M 0.20 benign(0.365) TCGA-GC-A6I1-01 11 118342656 118342656 C T KMT2A Missense_Mutation p.S261F 0.27 probably_damaging(0.982) TCGA-GC-A6I1-01 11 118502693 118502693 C G PHLDB1 Missense_Mutation p.Q722E 0.28 tolerated(0.1) benign(0.027) TCGA-GC-A6I1-01 11 123777656 123777656 T C OR8D4 Missense_Mutation p.I173T 0.28 tolerated(0.48) possibly_damaging(0.661) TCGA-GC-A6I1-01 11 128333475 128333475 C T ETS1 Missense_Mutation p.D391N 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A6I1-01 11 34482847 34482847 A G CAT Missense_Mutation p.N369S 0.32 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I1-01 11 36614270 36614270 C T RAG2 Silent p.E483E 0.37 TCGA-GC-A6I1-01 11 428562 428562 G A ANO9 Silent p.A366A 0.30 TCGA-GC-A6I1-01 11 47201746 47201746 C G PACSIN3 Missense_Mutation p.E198D 0.35 tolerated(0.81) benign(0.001) TCGA-GC-A6I1-01 11 47612132 47612132 G A C1QTNF4 Silent p.F77F 0.65 TCGA-GC-A6I1-01 11 58189910 58189910 G A OR5B2 Silent p.F275F 0.19 TCGA-GC-A6I1-01 11 62289259 62289259 C T AHNAK Silent p.V4210V 0.13 TCGA-GC-A6I1-01 11 65413733 65413733 C G SIPA1 Missense_Mutation p.I435M 0.22 deleterious(0) probably_damaging(0.966) TCGA-GC-A6I1-01 11 65486024 65486024 G A RNASEH2C 3'UTR 0.25 TCGA-GC-A6I1-01 11 65486325 65486325 G A RNASEH2C 3'UTR 0.25 TCGA-GC-A6I1-01 11 721618 721618 G A EPS8L2 Silent p.Q274Q 0.26 TCGA-GC-A6I1-01 11 9167361 9167361 C T DENND5A Silent p.L953L 0.39 TCGA-GC-A6I1-01 11 9598141 9598141 G A WEE1 Silent p.K318K 0.31 TCGA-GC-A6I1-01 12 104327828 104327828 C T HSP90B1 Missense_Mutation p.S169F 0.21 deleterious(0) probably_damaging(1) TCGA-GC-A6I1-01 12 108079614 108079614 G A PWP1 5'UTR 0.09 TCGA-GC-A6I1-01 12 109052525 109052525 C G CORO1C Missense_Mutation p.E207Q 0.20 tolerated(0.49) benign(0.02) TCGA-GC-A6I1-01 12 11174601 11174601 C T TAS2R19 Silent p.L190L 0.15 TCGA-GC-A6I1-01 12 120213613 120213613 C G CIT Missense_Mutation p.E640Q 0.09 deleterious(0.03) probably_damaging(0.987) TCGA-GC-A6I1-01 12 132195962 132195963 GG C SFSWAP Frame_Shift_Del p.W63Sfs*44 0.09 TCGA-GC-A6I1-01 12 133249314 133249314 C T POLE Missense_Mutation p.D529N 0.26 tolerated(0.67) benign(0.001) TCGA-GC-A6I1-01 12 20833191 20833191 A T PDE3A Nonsense_Mutation p.K1138* 0.23 TCGA-GC-A6I1-01 12 26639144 26639144 C T ITPR2 Missense_Mutation p.E1902K 0.23 tolerated(0.47) benign(0.002) TCGA-GC-A6I1-01 12 29659683 29659683 C G TMTC1 3'Flank 0.25 TCGA-GC-A6I1-01 12 3921225 3921225 G A PARP11 3'UTR 0.09 TCGA-GC-A6I1-01 12 39724593 39724593 C T KIF21A Missense_Mutation p.E1092K 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A6I1-01 12 48057236 48057236 G C RPAP3 3'UTR 0.14 TCGA-GC-A6I1-01 12 49218080 49218080 G C CACNB3 Missense_Mutation p.E111Q 0.35 deleterious(0) probably_damaging(0.995) TCGA-GC-A6I1-01 12 49420670 49420670 G A KMT2D Nonsense_Mutation p.R5027* 0.37 TCGA-GC-A6I1-01 12 51127925 51127925 C T DIP2B Missense_Mutation p.S1330L 0.17 deleterious(0.01) possibly_damaging(0.676) TCGA-GC-A6I1-01 12 56216425 56216425 C G DNAJC14 Missense_Mutation p.E576Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I1-01 12 56531992 56531992 C G ESYT1 Missense_Mutation p.S768C 0.13 deleterious(0) possibly_damaging(0.905) TCGA-GC-A6I1-01 12 57984959 57984959 C T PIP4K2C 5'Flank 0.30 TCGA-GC-A6I1-01 12 58109878 58109878 C G OS9 Nonsense_Mutation p.S265* 0.08 TCGA-GC-A6I1-01 12 58109919 58109919 C A OS9 Missense_Mutation p.L279I 0.11 deleterious(0.03) benign(0.367) TCGA-GC-A6I1-01 12 69140148 69140148 C T SLC35E3 5'UTR 0.15 TCGA-GC-A6I1-01 12 922874 922874 C T WNK1 Nonsense_Mutation p.Q276* 0.17 TCGA-GC-A6I1-01 12 93210076 93210076 C T EEA1 Missense_Mutation p.R610K 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-GC-A6I1-01 12 93210090 93210090 C T EEA1 Silent p.Q605Q 0.20 TCGA-GC-A6I1-01 12 93210159 93210159 C T EEA1 Silent p.E582E 0.26 TCGA-GC-A6I1-01 12 98849417 98849417 T A SLC9A7P1 RNA 0.14 TCGA-GC-A6I1-01 12 99548167 99548167 C T ANKS1B Missense_Mutation p.R809K 0.31 tolerated(0.06) possibly_damaging(0.829) TCGA-GC-A6I1-01 13 101287095 101287095 G A TMTC4 Silent p.F490F 0.15 TCGA-GC-A6I1-01 13 39588289 39588289 G C PROSER1 Nonsense_Mutation p.S367* 0.14 TCGA-GC-A6I1-01 13 42891766 42891766 C T AKAP11 Missense_Mutation p.S1836F 0.19 deleterious(0) probably_damaging(0.997) TCGA-GC-A6I1-01 13 42891795 42891795 C G AKAP11 Missense_Mutation p.H1846D 0.20 deleterious(0.03) possibly_damaging(0.735) TCGA-GC-A6I1-01 13 49796354 49796354 G C MLNR Missense_Mutation p.K360N 0.10 deleterious(0.04) possibly_damaging(0.747) TCGA-GC-A6I1-01 13 49933921 49933921 C G CAB39L Missense_Mutation p.Q108H 0.11 deleterious(0.02) possibly_damaging(0.773) TCGA-GC-A6I1-01 13 73301751 73301751 G A MZT1 5'UTR 0.42 TCGA-GC-A6I1-01 14 102467500 102467500 G A DYNC1H1 Missense_Mutation p.E1402K 0.13 probably_damaging(0.944) TCGA-GC-A6I1-01 14 104194185 104194185 G C ZFYVE21 Missense_Mutation p.E98Q 0.17 tolerated(0.1) benign(0.094) TCGA-GC-A6I1-01 14 106967116 106967116 G A IGHV1-46 Missense_Mutation p.T95M 0.17 tolerated(0.17) benign(0.131) TCGA-GC-A6I1-01 14 20666407 20666407 G A OR11G2 Missense_Mutation p.E305K 0.14 tolerated(0.12) benign(0.013) TCGA-GC-A6I1-01 14 20845844 20845844 G A TEP1 Silent p.A1930A 0.13 TCGA-GC-A6I1-01 14 20851967 20851967 G A TEP1 Silent p.L1215L 0.29 TCGA-GC-A6I1-01 14 24657774 24657774 G A IPO4 Missense_Mutation p.S47L 0.17 deleterious(0.05) possibly_damaging(0.509) TCGA-GC-A6I1-01 14 24880408 24880408 G A NYNRIN Silent p.V847V 0.23 TCGA-GC-A6I1-01 14 31589062 31589064 TCT - HECTD1 In_Frame_Del p.E1750del 0.23 TCGA-GC-A6I1-01 14 31828244 31828244 G A HEATR5A Silent p.L404L 0.27 TCGA-GC-A6I1-01 14 60750237 60750237 C T PPM1A Silent p.V345V 0.07 TCGA-GC-A6I1-01 14 70633541 70633541 A T SLC8A3 Silent p.T533T 0.06 TCGA-GC-A6I1-01 14 75230630 75230630 C T YLPM1 Silent p.P146P 0.09 TCGA-GC-A6I1-01 14 76184201 76184201 C T TTLL5 Intron 0.21 TCGA-GC-A6I1-01 14 95670764 95670764 C T CLMN Missense_Mutation p.E308K 0.13 deleterious(0.01) probably_damaging(0.967) TCGA-GC-A6I1-01 15 45470421 45470421 C T SHF Silent p.E129E 0.37 TCGA-GC-A6I1-01 16 1537951 1537951 C G PTX4 Silent p.V49V 0.20 TCGA-GC-A6I1-01 16 15961316 15961316 G A FOPNL Missense_Mutation p.S169F 0.24 tolerated_low_confidence(0.07) benign(0.118) TCGA-GC-A6I1-01 16 2138122 2138122 G A TSC2 Silent p.Q1714Q 0.40 TCGA-GC-A6I1-01 16 31151810 31151810 C T PRSS36 Intron 0.33 TCGA-GC-A6I1-01 16 56423184 56423184 C G AMFR Missense_Mutation p.E397Q 0.19 tolerated(0.37) benign(0.025) TCGA-GC-A6I1-01 16 56423190 56423190 G A AMFR Nonsense_Mutation p.Q395* 0.20 TCGA-GC-A6I1-01 16 69373323 69373323 C T COG8 Missense_Mutation p.D45N 0.25 deleterious(0.03) benign(0.418) TCGA-GC-A6I1-01 16 69373686 69373686 C G NIP7 5'UTR 0.19 TCGA-GC-A6I1-01 16 70817458 70817458 C A VAC14 Splice_Site p.X199_splice 0.19 TCGA-GC-A6I1-01 16 84459405 84459405 C A ATP2C2 Silent p.V328V 0.22 TCGA-GC-A6I1-01 16 85009816 85009816 C G ZDHHC7 3'Flank 0.19 TCGA-GC-A6I1-01 17 13400093 13400093 C T HS3ST3A1 Silent p.E214E 0.17 TCGA-GC-A6I1-01 17 14248387 14248387 G A HS3ST3B1 Silent p.E199E 0.50 TCGA-GC-A6I1-01 17 15967419 15967419 C T NCOR1 Silent p.R1728R 0.38 TCGA-GC-A6I1-01 17 15984021 15984021 C T NCOR1 Silent p.L1066L 0.26 TCGA-GC-A6I1-01 17 29588876 29588878 GTA TACAACCTTGAAAT NF1 Splice_Site p.X1575_splice 0.24 TCGA-GC-A6I1-01 17 42092411 42092411 C G TMEM101 5'UTR 0.41 TCGA-GC-A6I1-01 17 45016218 45016218 G A GOSR2 Intron 0.41 TCGA-GC-A6I1-01 17 48633071 48633071 G A SPATA20 3'UTR 0.30 TCGA-GC-A6I1-01 17 56270865 56270867 GAG - EPX In_Frame_Del p.E102del 0.25 TCGA-GC-A6I1-01 17 61784700 61784700 C G STRADA Missense_Mutation p.M220I 0.31 tolerated(0.12) benign(0.217) TCGA-GC-A6I1-01 17 63221275 63221275 C T RGS9 Silent p.I521I 0.40 TCGA-GC-A6I1-01 17 70119768 70119768 G A SOX9 Missense_Mutation p.R257H 0.31 deleterious(0.03) probably_damaging(0.966) TCGA-GC-A6I1-01 17 7140971 7140971 G A PHF23 Missense_Mutation p.P15S 0.37 tolerated(0.23) possibly_damaging(0.665) TCGA-GC-A6I1-01 17 7289877 7289877 C T TNK1 Intron 0.25 TCGA-GC-A6I1-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.44 deleterious(0) probably_damaging(1) TCGA-GC-A6I1-01 18 163451 163451 A T USP14 Nonsense_Mutation p.K54* 0.13 TCGA-GC-A6I1-01 18 21736523 21736523 C G CABYR Intron 0.08 TCGA-GC-A6I1-01 18 22806456 22806456 C T ZNF521 Missense_Mutation p.V476I 0.13 tolerated(0.33) benign(0.015) TCGA-GC-A6I1-01 18 46906102 46906102 G T DYM Missense_Mutation p.L74I 0.11 tolerated(0.08) benign(0.403) TCGA-GC-A6I1-01 18 51807222 51807222 G A POLI Missense_Mutation p.E249K 0.21 deleterious(0) possibly_damaging(0.756) TCGA-GC-A6I1-01 18 67345047 67345047 G A DOK6 Missense_Mutation p.E123K 0.13 deleterious(0) possibly_damaging(0.889) TCGA-GC-A6I1-01 18 70205361 70205361 G T CBLN2 3'UTR 0.18 TCGA-GC-A6I1-01 19 1055153 1055153 G A ABCA7 Nonsense_Mutation p.W1336* 0.33 TCGA-GC-A6I1-01 19 12740069 12740069 C T ZNF791 Nonsense_Mutation p.R576* 0.23 TCGA-GC-A6I1-01 19 17953122 17953122 C T JAK3 Intron 0.27 TCGA-GC-A6I1-01 19 18684180 18684180 G C UBA52 Missense_Mutation p.E24Q 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-GC-A6I1-01 19 21992383 21992383 C G ZNF43 Silent p.V152V 0.25 TCGA-GC-A6I1-01 19 2252454 2252454 C T JSRP1 Silent p.P290P 0.36 TCGA-GC-A6I1-01 19 36036183 36036183 G T GAPDHS 3'UTR 0.23 TCGA-GC-A6I1-01 19 3661066 3661066 G T PIP5K1C Silent p.L122L 0.31 TCGA-GC-A6I1-01 19 37117532 37117532 G C ZNF382 Missense_Mutation p.D245H 0.29 tolerated(0.33) possibly_damaging(0.885) TCGA-GC-A6I1-01 19 37643118 37643118 C T ZNF585A Silent p.Q506Q 0.16 TCGA-GC-A6I1-01 19 37644179 37644179 G A ZNF585A Missense_Mutation p.H153Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I1-01 19 38877885 38877885 G A GGN Missense_Mutation p.S6L 0.38 deleterious_low_confidence(0) unknown(0) TCGA-GC-A6I1-01 19 38949958 38949958 C T RYR1 Silent p.V780V 0.10 TCGA-GC-A6I1-01 19 45918214 45918214 C T ERCC1 Missense_Mutation p.E203K 0.30 deleterious(0) possibly_damaging(0.637) TCGA-GC-A6I1-01 19 46444134 46444134 C T NOVA2 Missense_Mutation p.V156M 0.27 deleterious(0.01) unknown(0) TCGA-GC-A6I1-01 19 51918273 51918273 G A SIGLEC10 Silent p.L474L 0.08 TCGA-GC-A6I1-01 19 53014634 53014634 C T ZNF578 Missense_Mutation p.H334Y 0.27 tolerated(0.05) benign(0.004) TCGA-GC-A6I1-01 1 100336089 100336089 C T AGL Silent p.Y266Y 0.10 TCGA-GC-A6I1-01 1 101200213 101200213 G A VCAM1 Missense_Mutation p.D650N 0.17 tolerated(0.71) benign(0.068) TCGA-GC-A6I1-01 1 109202563 109202563 G C HENMT1 5'UTR 0.31 TCGA-GC-A6I1-01 1 110768655 110768655 C T KCNC4 Silent p.L558L 0.27 TCGA-GC-A6I1-01 1 114970427 114970427 G A TRIM33 Silent p.F415F 0.15 TCGA-GC-A6I1-01 1 117602954 117602954 G C TTF2 5'UTR 0.33 TCGA-GC-A6I1-01 1 118584520 118584520 G A SPAG17 Missense_Mutation p.S987L 0.24 tolerated(0.14) benign(0.313) TCGA-GC-A6I1-01 1 12726694 12726694 C T AADACL4 Missense_Mutation p.P391L 0.18 deleterious(0.01) benign(0.417) TCGA-GC-A6I1-01 1 1273369 1273369 G A DVL1 Nonsense_Mutation p.Q543* 0.22 TCGA-GC-A6I1-01 1 146403710 146403710 C T NBPF12 Silent p.F348F 0.15 TCGA-GC-A6I1-01 1 152187824 152187824 C G HRNR Missense_Mutation p.S2094T 0.12 unknown(0) TCGA-GC-A6I1-01 1 153609061 153609061 G A CHTOP 5'UTR 0.09 TCGA-GC-A6I1-01 1 153930887 153930887 C T CRTC2 Silent p.Q29Q 0.28 TCGA-GC-A6I1-01 1 153930899 153930899 C T CRTC2 Silent p.K25K 0.34 TCGA-GC-A6I1-01 1 153930904 153930904 C G CRTC2 Missense_Mutation p.E24Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I1-01 1 153931023 153931023 C G CRTC2 5'UTR 0.30 TCGA-GC-A6I1-01 1 156594214 156594214 G A HAPLN2 Missense_Mutation p.E171K 0.27 tolerated(0.3) possibly_damaging(0.501) TCGA-GC-A6I1-01 1 16353090 16353090 G A CLCNKA Silent p.T186T 0.12 TCGA-GC-A6I1-01 1 17662719 17662719 C T PADI4 Nonsense_Mutation p.Q136* 0.21 TCGA-GC-A6I1-01 1 182353724 182353724 G A GLUL Missense_Mutation p.S313F 0.17 deleterious(0) possibly_damaging(0.718) TCGA-GC-A6I1-01 1 182827713 182827713 C G DHX9 Missense_Mutation p.Q280E 0.17 tolerated(0.33) benign(0.003) TCGA-GC-A6I1-01 1 201981192 201981192 G A ELF3 Missense_Mutation p.D91N 0.31 tolerated(0.39) probably_damaging(1) TCGA-GC-A6I1-01 1 201981500 201981500 G T ELF3 Missense_Mutation p.W138C 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-GC-A6I1-01 1 203743121 203743121 C T LAX1 Missense_Mutation p.S170L 0.12 tolerated(0.07) benign(0.006) TCGA-GC-A6I1-01 1 216040414 216040414 C T USH2A Missense_Mutation p.R2927K 0.39 benign(0.009) TCGA-GC-A6I1-01 1 22174479 22174479 G A HSPG2 Silent p.V2615V 0.15 TCGA-GC-A6I1-01 1 231298690 231298690 G C TRIM67 5'Flank 0.08 TCGA-GC-A6I1-01 1 236767273 236767273 C T HEATR1 Silent p.R41R 0.07 TCGA-GC-A6I1-01 1 237586488 237586488 A G RYR2 Silent p.L315L 0.08 TCGA-GC-A6I1-01 1 237780775 237780775 C A RYR2 Missense_Mutation p.P1969T 0.07 possibly_damaging(0.831) TCGA-GC-A6I1-01 1 248436338 248436338 G T OR2T33 Missense_Mutation p.P260H 0.19 deleterious(0) probably_damaging(0.996) TCGA-GC-A6I1-01 1 25228904 25228904 C A RUNX3 Missense_Mutation p.Q333H 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-GC-A6I1-01 1 27189675 27189675 C T SFN 5'UTR 0.07 TCGA-GC-A6I1-01 1 27687429 27687429 C T MAP3K6 Missense_Mutation p.A635T 0.44 tolerated(0.5) benign(0.001) TCGA-GC-A6I1-01 1 3624168 3624168 C T TP73 Missense_Mutation p.S81L 0.11 deleterious(0.01) benign(0.148) TCGA-GC-A6I1-01 1 36762331 36762332 - A THRAP3 Frame_Shift_Ins p.T757Nfs*6 0.26 TCGA-GC-A6I1-01 1 3677907 3677907 C G CCDC27 Silent p.L258L 0.18 TCGA-GC-A6I1-01 1 40961673 40961673 C T ZFP69 Missense_Mutation p.S508F 0.12 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I1-01 1 43890454 43890454 G C SZT2 Splice_Site p.X824_splice 0.26 TCGA-GC-A6I1-01 1 43892412 43892412 C - SZT2 Frame_Shift_Del p.H1024Mfs*23 0.12 TCGA-GC-A6I1-01 1 46543206 46543206 C G PIK3R3 Missense_Mutation p.D99H 0.31 deleterious(0) probably_damaging(1) TCGA-GC-A6I1-01 1 53555495 53555495 G C SLC1A7 Silent p.L446L 0.14 TCGA-GC-A6I1-01 1 57216852 57216852 C G C1orf168 Missense_Mutation p.E418Q 0.26 tolerated(0.14) benign(0.027) TCGA-GC-A6I1-01 1 63113920 63113920 C A DOCK7 Missense_Mutation p.D197Y 0.13 deleterious(0.01) benign(0.152) TCGA-GC-A6I1-01 1 7798260 7798260 C G CAMTA1 Silent p.L1300L 0.23 TCGA-GC-A6I1-01 1 8415562 8415562 C G RERE Missense_Mutation p.Q1528H 0.07 unknown(0) TCGA-GC-A6I1-01 1 93701817 93701817 G C CCDC18 Missense_Mutation p.E878Q 0.05 deleterious(0) probably_damaging(0.983) TCGA-GC-A6I1-01 1 94645281 94645281 C T ARHGAP29 Missense_Mutation p.R827Q 0.23 deleterious(0.02) benign(0.343) TCGA-GC-A6I1-01 20 25264856 25264856 C G PYGB Silent p.L579L 0.13 TCGA-GC-A6I1-01 20 25656739 25656739 C G ZNF337 Missense_Mutation p.Q395H 0.23 deleterious(0.04) benign(0.219) TCGA-GC-A6I1-01 20 25657159 25657159 C T ZNF337 Silent p.Q255Q 0.24 TCGA-GC-A6I1-01 20 32199070 32199070 C G CBFA2T2 Missense_Mutation p.L126V 0.20 deleterious(0) probably_damaging(0.981) TCGA-GC-A6I1-01 20 56139383 56139383 G C PCK1 Missense_Mutation p.D374H 0.24 deleterious(0.01) possibly_damaging(0.791) TCGA-GC-A6I1-01 20 60419721 60419721 C G CDH4 Intron 0.21 TCGA-GC-A6I1-01 21 31538732 31538732 G A CLDN17 Silent p.S68S 0.24 TCGA-GC-A6I1-01 21 31971130 31971130 C G KRTAP6-2 Missense_Mutation p.G22R 0.23 unknown(0) TCGA-GC-A6I1-01 21 38537860 38537860 C G TTC3 Missense_Mutation p.S1115C 0.33 deleterious(0) probably_damaging(0.992) TCGA-GC-A6I1-01 21 45503025 45503025 A G TRAPPC10 Missense_Mutation p.I694V 0.23 tolerated(0.74) benign(0.019) TCGA-GC-A6I1-01 22 21350312 21350312 C T LZTR1 Silent p.I710I 0.31 TCGA-GC-A6I1-01 22 32210986 32210986 G A DEPDC5 Missense_Mutation p.R485Q 0.28 tolerated(0.07) benign(0.063) TCGA-GC-A6I1-01 22 39917471 39917471 G C ATF4 Silent p.L7L 0.29 TCGA-GC-A6I1-01 22 46318683 46318683 G A WNT7B 3'UTR 0.12 TCGA-GC-A6I1-01 2 105977788 105977788 G A FHL2 Silent p.L264L 0.36 TCGA-GC-A6I1-01 2 107422985 107422985 T G ST6GAL2 3'UTR 0.33 TCGA-GC-A6I1-01 2 122216530 122216530 C G CLASP1 Silent p.G400G 0.35 TCGA-GC-A6I1-01 2 1670166 1670166 G A PXDN Missense_Mutation p.P371S 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-GC-A6I1-01 2 178937111 178937111 G T PDE11A Missense_Mutation p.H18Q 0.27 deleterious(0) benign(0.002) TCGA-GC-A6I1-01 2 185802531 185802531 T G ZNF804A Missense_Mutation p.V803G 0.05 tolerated(0.46) benign(0.307) TCGA-GC-A6I1-01 2 198363428 198363428 C T HSPD1 Missense_Mutation p.D49N 0.06 tolerated(0.37) benign(0.113) TCGA-GC-A6I1-01 2 239184400 239184400 G A PER2 Silent p.S144S 0.11 TCGA-GC-A6I1-01 2 242140758 242140758 G C ANO7 Missense_Mutation p.K254N 0.35 deleterious(0.03) benign(0.003) TCGA-GC-A6I1-01 2 242157300 242157300 C T ANO7 Silent p.I778I 0.53 TCGA-GC-A6I1-01 2 242648673 242648673 C G ING5 Missense_Mutation p.S51C 0.42 deleterious(0.02) possibly_damaging(0.8) TCGA-GC-A6I1-01 2 27462282 27462282 G A CAD Silent p.V1779V 0.16 TCGA-GC-A6I1-01 2 38178908 38178908 A G RMDN2 Missense_Mutation p.T184A 0.34 tolerated_low_confidence(0.06) benign(0.123) TCGA-GC-A6I1-01 2 42490329 42490329 C T EML4 Missense_Mutation p.P175L 0.26 tolerated(0.33) benign(0.001) TCGA-GC-A6I1-01 2 48915214 48915214 G A LHCGR Silent p.L574L 0.29 TCGA-GC-A6I1-01 2 75881894 75881894 C T MRPL19 Missense_Mutation p.R170W 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-GC-A6I1-01 2 9347222 9347222 C T ASAP2 5'UTR 0.18 TCGA-GC-A6I1-01 3 130189780 130189780 C A COL6A5 Missense_Mutation p.P2515T 0.14 deleterious(0.05) benign(0.094) TCGA-GC-A6I1-01 3 132394678 132394678 G A UBA5 Missense_Mutation p.E348K 0.20 deleterious(0.04) possibly_damaging(0.77) TCGA-GC-A6I1-01 3 13395134 13395134 C T NUP210 Missense_Mutation p.A850T 0.09 tolerated(0.52) benign(0.004) TCGA-GC-A6I1-01 3 136240139 136240139 A G STAG1 Missense_Mutation p.Y198H 0.13 deleterious(0.04) possibly_damaging(0.582) TCGA-GC-A6I1-01 3 138121045 138121045 G A MRAS Silent p.K187K 0.12 TCGA-GC-A6I1-01 3 140401616 140401616 C A TRIM42 Nonsense_Mutation p.Y218* 0.10 TCGA-GC-A6I1-01 3 142389876 142389876 C G PLS1 Missense_Mutation p.F92L 0.20 deleterious(0.03) benign(0.009) TCGA-GC-A6I1-01 3 170079137 170079137 G C SKIL Missense_Mutation p.E340Q 0.18 deleterious(0) probably_damaging(0.986) TCGA-GC-A6I1-01 3 171405270 171405270 C T PLD1 Silent p.L548L 0.23 TCGA-GC-A6I1-01 3 176765187 176765187 T C TBL1XR1 Splice_Site p.X256_splice 0.41 TCGA-GC-A6I1-01 3 183703253 183703253 G C ABCC5 Intron 0.22 TCGA-GC-A6I1-01 3 189608648 189608648 C G TP63 Missense_Mutation p.Q575E 0.29 tolerated(0.08) probably_damaging(0.981) TCGA-GC-A6I1-01 3 194117863 194117863 G A GP5 Silent p.F383F 0.21 TCGA-GC-A6I1-01 3 19575564 19575564 G C KCNH8 Silent p.V1099V 0.24 TCGA-GC-A6I1-01 3 195798950 195798950 C T TFRC Missense_Mutation p.E170K 0.13 tolerated(0.28) benign(0.039) TCGA-GC-A6I1-01 3 196210645 196210645 G C RNF168 Missense_Mutation p.Q226E 0.18 deleterious(0.05) benign(0.062) TCGA-GC-A6I1-01 3 37337686 37337686 C T GOLGA4 Missense_Mutation p.P286S 0.11 benign(0.002) TCGA-GC-A6I1-01 3 73111476 73111476 A T EBLN2 Nonsense_Mutation p.K82* 0.40 TCGA-GC-A6I1-01 3 8675499 8675499 G C SSUH2 Intron 0.23 TCGA-GC-A6I1-01 3 98110147 98110147 T C OR5K3 Missense_Mutation p.L213S 0.16 deleterious(0) probably_damaging(0.965) TCGA-GC-A6I1-01 4 110897208 110897208 G A EGF Missense_Mutation p.E624K 0.16 deleterious(0) probably_damaging(0.992) TCGA-GC-A6I1-01 4 119618445 119618445 C G METTL14 Missense_Mutation p.I204M 0.25 tolerated(0.17) possibly_damaging(0.77) TCGA-GC-A6I1-01 4 123949459 123949459 G C SPATA5 Missense_Mutation p.G663A 0.23 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I1-01 4 144469219 144469219 G A SMARCA5 Missense_Mutation p.D971N 0.24 deleterious(0.01) benign(0.213) TCGA-GC-A6I1-01 4 155249315 155249315 C A DCHS2 Missense_Mutation p.L861F 0.14 tolerated(0.09) possibly_damaging(0.859) TCGA-GC-A6I1-01 4 162307402 162307402 C A FSTL5 Missense_Mutation p.G681C 0.08 deleterious(0.04) possibly_damaging(0.524) TCGA-GC-A6I1-01 4 176556118 176556118 C T GPM6A Missense_Mutation p.E259K 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-GC-A6I1-01 4 185038011 185038011 C G ENPP6 Missense_Mutation p.E285Q 0.34 deleterious(0.03) probably_damaging(0.946) TCGA-GC-A6I1-01 4 187197437 187197437 C G F11 Missense_Mutation p.D216E 0.09 tolerated(0.97) benign(0.064) TCGA-GC-A6I1-01 4 187521451 187521451 G C FAT1 Missense_Mutation p.Q3902E 0.12 possibly_damaging(0.593) TCGA-GC-A6I1-01 4 189012774 189012774 G A TRIML2 Missense_Mutation p.P306L 0.10 deleterious(0.01) probably_damaging(1) TCGA-GC-A6I1-01 4 2241811 2241811 G C HAUS3 Nonsense_Mutation p.S288* 0.36 TCGA-GC-A6I1-01 4 2242561 2242561 G A HAUS3 Missense_Mutation p.S38L 0.19 tolerated(0.07) benign(0.031) TCGA-GC-A6I1-01 4 39077763 39077763 C T KLHL5 Missense_Mutation p.H234Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I1-01 4 47901397 47901397 G T NFXL1 Silent p.L272L 0.20 TCGA-GC-A6I1-01 4 48567685 48567685 G A FRYL Missense_Mutation p.P1065S 0.16 tolerated(0.18) probably_damaging(0.956) TCGA-GC-A6I1-01 4 5975424 5975424 C T C4orf50 Missense_Mutation p.E598K 0.24 deleterious(0.01) probably_damaging(0.958) TCGA-GC-A6I1-01 4 66467640 66467640 A T EPHA5 Missense_Mutation p.F210Y 0.06 deleterious(0) possibly_damaging(0.589) TCGA-GC-A6I1-01 4 71895066 71895066 C T DCK Intron 0.23 TCGA-GC-A6I1-01 4 73986732 73986732 C G ANKRD17 Missense_Mutation p.D1239H 0.11 possibly_damaging(0.889) TCGA-GC-A6I1-01 4 85594022 85594022 C T WDFY3 Silent p.%3D 0.23 TCGA-GC-A6I1-01 4 89016704 89016704 G A ABCG2 Nonsense_Mutation p.Q569* 0.25 TCGA-GC-A6I1-01 4 90816297 90816297 C G MMRN1 Missense_Mutation p.R59G 0.21 deleterious_low_confidence(0.02) benign(0.033) TCGA-GC-A6I1-01 4 96090340 96090340 C G UNC5C 3'UTR 0.19 TCGA-GC-A6I1-01 4 9784967 9784967 C G DRD5 Missense_Mutation p.F438L 0.15 tolerated(0.17) benign(0) TCGA-GC-A6I1-01 5 10402508 10402508 C G MARCH6 Missense_Mutation p.L356V 0.42 tolerated(0.29) benign(0.003) TCGA-GC-A6I1-01 5 140517421 140517421 C T PCDHB5 3'UTR 0.33 TCGA-GC-A6I1-01 5 156747784 156747784 C T CYFIP2 Missense_Mutation p.R523C 0.31 deleterious(0) probably_damaging(0.988) TCGA-GC-A6I1-01 5 161324341 161324341 G A GABRA1 Silent p.P428P 0.28 TCGA-GC-A6I1-01 5 172573954 172573954 G C BNIP1 Missense_Mutation p.R57T 0.35 deleterious(0) benign(0.138) TCGA-GC-A6I1-01 5 173359453 173359453 G T CPEB4 Missense_Mutation p.G403V 0.22 tolerated_low_confidence(0.06) benign(0.01) TCGA-GC-A6I1-01 5 176316664 176316664 C G HK3 Missense_Mutation p.E238Q 0.46 tolerated(0.05) probably_damaging(0.99) TCGA-GC-A6I1-01 5 40762971 40762971 G C PRKAA1 Missense_Mutation p.S545C 0.38 tolerated_low_confidence(0.07) possibly_damaging(0.881) TCGA-GC-A6I1-01 5 5223046 5223046 C T ADAMTS16 Intron 0.38 TCGA-GC-A6I1-01 5 70818623 70818623 G C BDP1 Missense_Mutation p.R1745T 0.23 deleterious(0.04) possibly_damaging(0.544) TCGA-GC-A6I1-01 5 74325125 74325125 G C GCNT4 Silent p.L246L 0.28 TCGA-GC-A6I1-01 6 10830786 10830786 G C MAK Missense_Mutation p.I32M 0.38 deleterious(0) probably_damaging(0.994) TCGA-GC-A6I1-01 6 109867073 109867074 - T AK9 Frame_Shift_Ins p.Q1075Afs*22 0.25 TCGA-GC-A6I1-01 6 112451194 112451194 G A LAMA4 Silent p.T1339T 0.32 TCGA-GC-A6I1-01 6 149718775 149718775 C T TAB2 Missense_Mutation p.L547F 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-GC-A6I1-01 6 159687273 159687273 G A FNDC1 Silent p.L1814L 0.30 TCGA-GC-A6I1-01 6 160664697 160664697 G A SLC22A2 Missense_Mutation p.L396F 0.13 tolerated(0.43) benign(0.02) TCGA-GC-A6I1-01 6 18160153 18160153 G C KDM1B Missense_Mutation p.K9N 0.09 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-GC-A6I1-01 6 26156681 26156681 G A HIST1H1E Silent p.K21K 0.23 TCGA-GC-A6I1-01 6 31783365 31783365 G A HSPA1A 5'UTR 0.33 TCGA-GC-A6I1-01 6 32097154 32097154 G A FKBPL Missense_Mutation p.S135L 0.09 tolerated(0.09) benign(0.255) TCGA-GC-A6I1-01 6 34826498 34826498 G A UHRF1BP1 Missense_Mutation p.E789K 0.24 tolerated(0.16) benign(0.011) TCGA-GC-A6I1-01 6 43594085 43594085 C T GTPBP2 Silent p.R92R 0.16 TCGA-GC-A6I1-01 6 52053995 52053995 G A IL17A Missense_Mutation p.E125K 0.23 deleterious(0.04) benign(0.238) TCGA-GC-A6I1-01 6 66112492 66112492 T C EYS Missense_Mutation p.M355V 0.28 tolerated(0.56) benign(0.005) TCGA-GC-A6I1-01 7 100457526 100457526 T G SLC12A9 Missense_Mutation p.Y333D 0.30 deleterious(0) possibly_damaging(0.87) TCGA-GC-A6I1-01 7 100491461 100491461 G A ACHE Silent p.N131N 0.24 TCGA-GC-A6I1-01 7 104377170 104377170 C G LHFPL3 Nonsense_Mutation p.S165* 0.15 TCGA-GC-A6I1-01 7 107569930 107569930 C G LAMB1 Missense_Mutation p.E1558Q 0.29 tolerated(0.07) probably_damaging(0.911) TCGA-GC-A6I1-01 7 150325500 150325504 GCCGA - GIMAP6 Frame_Shift_Del p.L61Qfs*7 0.11 TCGA-GC-A6I1-01 7 150325561 150325561 C T GIMAP6 Missense_Mutation p.R42K 0.16 tolerated(0.08) benign(0.318) TCGA-GC-A6I1-01 7 150878190 150878190 G A ASB10 Silent p.L314L 0.34 TCGA-GC-A6I1-01 7 150878191 150878191 G A ASB10 Silent p.L313L 0.35 TCGA-GC-A6I1-01 7 152551555 152551555 C T ACTR3B Nonsense_Mutation p.Q392* 0.28 TCGA-GC-A6I1-01 7 1538785 1538785 G A INTS1 Silent p.L321L 0.19 TCGA-GC-A6I1-01 7 23571498 23571498 G C TRA2A 5'UTR 0.40 TCGA-GC-A6I1-01 7 43830847 43830847 G C BLVRA Splice_Site p.X45_splice 0.24 TCGA-GC-A6I1-01 7 45701743 45701743 T C ADCY1 Missense_Mutation p.M512T 0.22 deleterious(0) benign(0.199) TCGA-GC-A6I1-01 7 45726197 45726197 C G ADCY1 Silent p.L793L 0.12 TCGA-GC-A6I1-01 7 5879679 5879679 G C ZNF815P RNA 0.11 TCGA-GC-A6I1-01 7 6771565 6771565 G A PMS2CL 5'Flank 0.18 TCGA-GC-A6I1-01 7 73638409 73638409 G C LAT2 Silent p.L170L 0.22 TCGA-GC-A6I1-01 7 73768220 73768220 C T CLIP2 Missense_Mutation p.T230M 0.22 deleterious(0) probably_damaging(0.984) TCGA-GC-A6I1-01 7 87465552 87465552 G C SLC25A40 3'UTR 0.11 TCGA-GC-A6I1-01 7 92120715 92120715 G A PEX1 Silent p.G1103G 0.19 TCGA-GC-A6I1-01 7 92905654 92905654 C G CCDC132 Intron 0.19 TCGA-GC-A6I1-01 8 102570785 102570785 C T GRHL2 Silent p.I141I 0.13 TCGA-GC-A6I1-01 8 103842089 103842089 T C AZIN1 Missense_Mutation p.K327R 0.31 tolerated(0.54) possibly_damaging(0.532) TCGA-GC-A6I1-01 8 110374845 110374845 C T PKHD1L1 Silent p.L12L 0.12 TCGA-GC-A6I1-01 8 121561169 121561169 G A SNTB1 Missense_Mutation p.S389L 0.14 deleterious(0.04) benign(0.302) TCGA-GC-A6I1-01 8 56270266 56270266 C G XKR4 Missense_Mutation p.R279G 0.32 deleterious(0.01) possibly_damaging(0.695) TCGA-GC-A6I1-01 8 61121451 61121451 G A CA8 Missense_Mutation p.H256Y 0.19 tolerated(0.53) benign(0.033) TCGA-GC-A6I1-01 8 66617032 66617032 C T MTFR1 Nonsense_Mutation p.Q129* 0.11 TCGA-GC-A6I1-01 8 69103970 69103970 G C PREX2 Missense_Mutation p.D1454H 0.27 deleterious(0) possibly_damaging(0.879) TCGA-GC-A6I1-01 8 72184034 72184034 T C EYA1 Missense_Mutation p.R309G 0.04 deleterious(0.02) possibly_damaging(0.729) TCGA-GC-A6I1-01 8 75262778 75262778 C G GDAP1 Missense_Mutation p.L28V 0.13 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I1-01 8 79514133 79514133 G C PKIA 3'UTR 0.43 TCGA-GC-A6I1-01 9 14619024 14619024 G C ZDHHC21 Missense_Mutation p.F246L 0.37 tolerated(0.88) benign(0.005) TCGA-GC-A6I1-01 9 14747356 14747356 G C FREM1 Missense_Mutation p.S1972C 0.32 deleterious(0.04) possibly_damaging(0.474) TCGA-GC-A6I1-01 9 21974741 21974741 C G CDKN2A Missense_Mutation p.R29P 0.34 deleterious(0) probably_damaging(0.951) TCGA-GC-A6I1-01 9 2652900 2652900 C A VLDLR Missense_Mutation p.S846Y 0.31 deleterious(0.01) benign(0.304) TCGA-GC-A6I1-01 9 36249344 36249344 C G GNE Missense_Mutation p.K34N 0.26 deleterious_low_confidence(0) benign(0.086) TCGA-GC-A6I1-01 9 91083417 91083417 G A SPIN1 Missense_Mutation p.M162I 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-GC-A6I1-01 X 123517667 123517667 C G TENM1 Missense_Mutation p.D2372H 0.21 deleterious(0) probably_damaging(0.997) TCGA-GC-A6I1-01 X 12725660 12725660 A T FRMPD4 Nonsense_Mutation p.K454* 0.22 TCGA-GC-A6I1-01 X 129206253 129206253 C G ELF4 Missense_Mutation p.E160D 0.23 tolerated(0.23) benign(0.003) TCGA-GC-A6I1-01 X 140996091 140996091 A C MAGEC1 Missense_Mutation p.E967D 0.04 deleterious(0.01) unknown(0) TCGA-GC-A6I1-01 X 1522382 1522382 C G ASMTL Missense_Mutation p.G549A 0.11 deleterious(0.01) probably_damaging(0.96) TCGA-GC-A6I1-01 X 15585846 15585846 C T ACE2 Intron 0.16 TCGA-GC-A6I1-01 X 15619008 15619008 G C ACE2 Silent p.L9L 0.25 TCGA-GC-A6I1-01 X 17744539 17744539 G A NHS Silent p.A750A 0.09 TCGA-GC-A6I1-01 X 17745227 17745227 C T NHS Missense_Mutation p.P980S 0.13 deleterious(0) probably_damaging(0.985) TCGA-GC-A6I1-01 X 19022953 19022953 C T GPR64 Silent p.L628L 0.30 TCGA-GC-A6I1-01 X 19587227 19587227 C T SH3KBP1 Missense_Mutation p.D460N 0.26 deleterious(0.02) benign(0.026) TCGA-GC-A6I1-01 X 37027784 37027784 G A FAM47C Missense_Mutation p.R434H 0.22 tolerated_low_confidence(0.28) possibly_damaging(0.869) TCGA-GC-A6I1-01 X 41057842 41057842 G A USP9X Missense_Mutation p.G1481E 0.11 tolerated(0.06) probably_damaging(0.997) TCGA-GC-A6I1-01 X 75003485 75003485 C A MAGEE2 Missense_Mutation p.G468C 0.34 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 10 18837145 18837145 C G NSUN6 Missense_Mutation p.E365Q 0.21 deleterious(0) benign(0.233) TCGA-GC-A6I3-01 10 22618495 22618495 A T BMI1 3'UTR 0.19 TCGA-GC-A6I3-01 10 26994232 26994232 C A PDSS1 Missense_Mutation p.P82Q 0.11 tolerated(0.26) benign(0.007) TCGA-GC-A6I3-01 10 54527854 54527854 G T MBL2 3'UTR 0.11 TCGA-GC-A6I3-01 10 69556908 69556908 T A DNAJC12 Missense_Mutation p.E188V 0.15 deleterious(0.02) possibly_damaging(0.564) TCGA-GC-A6I3-01 10 69682876 69682876 G A HERC4 Missense_Mutation p.R996C 0.08 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 10 7614278 7614278 A T ITIH5 Intron 0.14 TCGA-GC-A6I3-01 11 105845227 105845227 T C GRIA4 Intron 0.44 TCGA-GC-A6I3-01 11 114441828 114441828 G T NXPE4 Missense_Mutation p.D489E 0.30 deleterious(0.01) probably_damaging(0.943) TCGA-GC-A6I3-01 11 118374380 118374380 T A KMT2A Nonsense_Mutation p.Y2591* 0.54 TCGA-GC-A6I3-01 11 118949691 118949691 C G VPS11 Silent p.L749L 0.24 TCGA-GC-A6I3-01 11 123756140 123756140 G A TMEM225 5'UTR 0.27 TCGA-GC-A6I3-01 11 124413382 124413382 G A OR8B12 Missense_Mutation p.P57S 0.28 deleterious_low_confidence(0.01) benign(0.356) TCGA-GC-A6I3-01 11 17435009 17435009 C T ABCC8 Missense_Mutation p.E803K 0.36 deleterious(0.01) benign(0.102) TCGA-GC-A6I3-01 11 36595984 36595984 C G RAG1 Nonsense_Mutation p.S377* 0.09 TCGA-GC-A6I3-01 11 40136013 40136015 TGT - LRRC4C In_Frame_Del p.T610del 0.26 TCGA-GC-A6I3-01 11 43351570 43351570 C T API5 Missense_Mutation p.L395F 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-GC-A6I3-01 11 55872757 55872757 C A OR8H2 Missense_Mutation p.P80H 0.35 deleterious(0) probably_damaging(0.986) TCGA-GC-A6I3-01 11 6129076 6129076 T A OR56B4 Nonsense_Mutation p.L23* 0.35 TCGA-GC-A6I3-01 11 67414389 67414389 C G ACY3 Missense_Mutation p.Q42H 0.21 tolerated(0.06) benign(0.05) TCGA-GC-A6I3-01 11 71724868 71724868 G C NUMA1 Missense_Mutation p.I1227M 0.07 benign(0.119) TCGA-GC-A6I3-01 11 89224388 89224388 G A NOX4 Silent p.L9L 0.15 TCGA-GC-A6I3-01 11 89224507 89224507 G T NOX4 5'UTR 0.60 TCGA-GC-A6I3-01 11 89896573 89896573 A C NAALAD2 Missense_Mutation p.S391R 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-GC-A6I3-01 11 95712451 95712451 G A MAML2 Silent p.L1044L 0.27 TCGA-GC-A6I3-01 12 100502272 100502272 T C UHRF1BP1L Silent p.E33E 0.15 TCGA-GC-A6I3-01 12 101493461 101493461 G T ANO4 Missense_Mutation p.M669I 0.12 tolerated(0.16) benign(0.015) TCGA-GC-A6I3-01 12 102572448 102572448 G A PARPBP Missense_Mutation p.E362K 0.14 tolerated(0.06) possibly_damaging(0.726) TCGA-GC-A6I3-01 12 108686724 108686724 C T CMKLR1 Missense_Mutation p.E6K 0.15 tolerated(0.23) benign(0.007) TCGA-GC-A6I3-01 12 116972684 116972684 C T LINC00173 RNA 0.18 TCGA-GC-A6I3-01 12 118464799 118464799 C G RFC5 Missense_Mutation p.Q257E 0.26 tolerated(1) benign(0.001) TCGA-GC-A6I3-01 12 118469031 118469031 C G RFC5 Missense_Mutation p.S324C 0.20 deleterious(0) benign(0.159) TCGA-GC-A6I3-01 12 118469110 118469110 C G RFC5 3'UTR 0.30 TCGA-GC-A6I3-01 12 121157892 121157892 C T UNC119B 3'UTR 0.36 TCGA-GC-A6I3-01 12 122396180 122396180 A T WDR66 Missense_Mutation p.N578I 0.12 deleterious(0) probably_damaging(0.993) TCGA-GC-A6I3-01 12 123186799 123186799 C T HCAR2 Silent p.A344A 0.12 TCGA-GC-A6I3-01 12 124171521 124171521 C G TCTN2 Missense_Mutation p.L235V 0.11 deleterious(0) possibly_damaging(0.8) TCGA-GC-A6I3-01 12 130184772 130184772 C T TMEM132D Missense_Mutation p.R184Q 0.15 tolerated(0.21) benign(0.18) TCGA-GC-A6I3-01 12 130830396 130830396 C T PIWIL1 Silent p.L97L 0.15 TCGA-GC-A6I3-01 12 132399773 132399773 C G ULK1 Missense_Mutation p.Q507E 0.33 tolerated(0.37) possibly_damaging(0.791) TCGA-GC-A6I3-01 12 132611135 132611135 G C RP13-977J11.5 RNA 0.21 TCGA-GC-A6I3-01 12 14827676 14827676 G C GUCY2C Missense_Mutation p.L323V 0.12 tolerated(0.64) benign(0.008) TCGA-GC-A6I3-01 12 30826957 30826957 G C IPO8 Missense_Mutation p.F292L 0.15 tolerated(0.12) benign(0.033) TCGA-GC-A6I3-01 12 4829812 4829812 C T GALNT8 5'UTR 0.20 TCGA-GC-A6I3-01 12 48740973 48740973 G A ZNF641 Intron 0.10 TCGA-GC-A6I3-01 12 49420120 49420120 T G KMT2D Missense_Mutation p.Y5210S 0.33 unknown(0) TCGA-GC-A6I3-01 12 50186276 50186276 G A NCKAP5L Missense_Mutation p.L1249F 0.12 tolerated(1) benign(0) TCGA-GC-A6I3-01 12 50186614 50186614 G C NCKAP5L Missense_Mutation p.L1166V 0.18 tolerated(0.44) benign(0.095) TCGA-GC-A6I3-01 12 56143467 56143467 C T GDF11 Missense_Mutation p.S342F 0.15 deleterious(0) possibly_damaging(0.799) TCGA-GC-A6I3-01 12 56997186 56997186 G C BAZ2A Missense_Mutation p.S1081C 0.22 tolerated(0.07) possibly_damaging(0.681) TCGA-GC-A6I3-01 12 58006801 58006801 C T ARHGEF25 Silent p.L101L 0.36 TCGA-GC-A6I3-01 12 58006840 58006840 C T ARHGEF25 Silent p.V114V 0.29 TCGA-GC-A6I3-01 12 66620604 66620604 G C IRAK3 Missense_Mutation p.R252T 0.08 deleterious(0) possibly_damaging(0.872) TCGA-GC-A6I3-01 12 66620608 66620608 G T IRAK3 Missense_Mutation p.L253F 0.07 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 12 72771829 72771829 C G TRHDE Missense_Mutation p.L370V 0.15 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I3-01 12 7510047 7510047 C T CD163L1 Missense_Mutation p.D1439N 0.29 tolerated(0.13) benign(0.017) TCGA-GC-A6I3-01 13 109704648 109704648 C G MYO16 Missense_Mutation p.T936S 0.11 tolerated(0.39) possibly_damaging(0.823) TCGA-GC-A6I3-01 13 21974609 21974609 G C ZDHHC20 Missense_Mutation p.S166C 0.25 deleterious(0) probably_damaging(0.941) TCGA-GC-A6I3-01 13 46718648 46718648 C T LCP1 Silent p.T394T 0.16 TCGA-GC-A6I3-01 13 53048131 53048131 C G CKAP2 Missense_Mutation p.P573A 0.20 tolerated(0.16) benign(0.085) TCGA-GC-A6I3-01 13 93518665 93518665 G T GPC5 Silent p.V564V 0.14 TCGA-GC-A6I3-01 13 93518666 93518666 G T GPC5 Missense_Mutation p.V565L 0.15 tolerated_low_confidence(0.18) benign(0.007) TCGA-GC-A6I3-01 14 100613059 100613059 G C DEGS2 3'UTR 0.10 TCGA-GC-A6I3-01 14 31675047 31675047 G A HECTD1 Silent p.C32C 0.15 TCGA-GC-A6I3-01 14 47530723 47530723 G T MDGA2 Silent p.I418I 0.19 TCGA-GC-A6I3-01 14 51289952 51289952 G A NIN Intron 0.12 TCGA-GC-A6I3-01 14 64421483 64421483 G C SYNE2 Missense_Mutation p.G213R 0.14 probably_damaging(1) TCGA-GC-A6I3-01 14 67854018 67854018 G C PLEK2 3'UTR 0.15 TCGA-GC-A6I3-01 14 68353908 68353908 A C RAD51B Missense_Mutation p.E248A 0.31 tolerated(0.22) benign(0.11) TCGA-GC-A6I3-01 14 69263096 69263096 T C ZFP36L1 5'Flank 0.10 TCGA-GC-A6I3-01 14 71374610 71374610 G A PCNX Missense_Mutation p.A15T 0.31 deleterious(0) probably_damaging(0.992) TCGA-GC-A6I3-01 14 86089188 86089188 C G FLRT2 Missense_Mutation p.L444V 0.22 tolerated(0.49) benign(0.002) TCGA-GC-A6I3-01 14 94007110 94007110 A T UNC79 Missense_Mutation p.D309V 0.14 deleterious(0.01) possibly_damaging(0.742) TCGA-GC-A6I3-01 14 95934283 95934283 C T SYNE3 Missense_Mutation p.E56K 0.15 deleterious(0) possibly_damaging(0.79) TCGA-GC-A6I3-01 15 22383120 22383120 T G OR4N4 Silent p.A216A 0.07 TCGA-GC-A6I3-01 15 22933776 22933776 C G CYFIP1 Missense_Mutation p.S232C 0.23 deleterious(0.02) benign(0.325) TCGA-GC-A6I3-01 15 25599566 25599566 T C UBE3A Missense_Mutation p.D766G 0.23 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 15 37388581 37388581 G A MEIS2 Missense_Mutation p.A99V 0.20 deleterious(0) probably_damaging(0.987) TCGA-GC-A6I3-01 15 38852031 38852031 G A RASGRP1 Nonsense_Mutation p.Q71* 0.18 TCGA-GC-A6I3-01 15 50154451 50154451 C G ATP8B4 Silent p.L1096L 0.14 TCGA-GC-A6I3-01 15 65946311 65946311 G C SLC24A1 Missense_Mutation p.R1065T 0.06 benign(0.386) TCGA-GC-A6I3-01 15 81235391 81235391 C G KIAA1199 Missense_Mutation p.L1269V 0.13 tolerated(0.24) probably_damaging(0.997) TCGA-GC-A6I3-01 15 85431057 85431057 G A SLC28A1 Silent p.E22E 0.09 TCGA-GC-A6I3-01 15 91083357 91083357 G A CRTC3 Silent p.A73A 0.09 TCGA-GC-A6I3-01 15 93558043 93558043 C T CHD2 Nonsense_Mutation p.Q1604* 0.10 TCGA-GC-A6I3-01 16 18851057 18851057 G C SMG1 Missense_Mutation p.S2303C 0.07 tolerated(0.09) probably_damaging(0.99) TCGA-GC-A6I3-01 16 2129415 2129415 C T TSC2 Silent p.S1090S 0.10 TCGA-GC-A6I3-01 16 2159861 2159861 A G PKD1 Silent p.H1769H 0.45 TCGA-GC-A6I3-01 16 30199132 30199132 C A CORO1A Silent p.I281I 0.11 TCGA-GC-A6I3-01 16 436993 436993 C G Z97634.3 Intron 0.20 TCGA-GC-A6I3-01 16 50745164 50745164 T C NOD2 Missense_Mutation p.S448P 0.16 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I3-01 16 615114 615114 C T C16orf11 Missense_Mutation p.A508V 0.19 tolerated(0.29) benign(0.006) TCGA-GC-A6I3-01 16 618163 618163 C T NHLRC4 Missense_Mutation p.S39F 0.26 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I3-01 16 67709613 67709613 G C GFOD2 Silent p.L201L 0.13 TCGA-GC-A6I3-01 16 68269852 68269852 G A ESRP2 Missense_Mutation p.L33F 0.16 tolerated(0.32) benign(0.084) TCGA-GC-A6I3-01 16 69143575 69143575 G T HAS3 Missense_Mutation p.A93S 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-GC-A6I3-01 16 69143576 69143576 C T HAS3 Missense_Mutation p.A93V 0.17 deleterious(0.01) possibly_damaging(0.897) TCGA-GC-A6I3-01 16 74537566 74537566 C A GLG1 Nonsense_Mutation p.E213* 0.12 TCGA-GC-A6I3-01 16 84493109 84493109 C T ATP2C2 Intron 0.31 TCGA-GC-A6I3-01 17 37457266 37457266 C T FBXL20 Silent p.Q74Q 0.08 TCGA-GC-A6I3-01 17 37790188 37790188 G C PPP1R1B Missense_Mutation p.E98D 0.15 tolerated(0.4) benign(0.264) TCGA-GC-A6I3-01 17 37791925 37791925 G T PPP1R1B Nonsense_Mutation p.E171* 0.12 TCGA-GC-A6I3-01 17 37791935 37791935 G A PPP1R1B Missense_Mutation p.R174K 0.12 tolerated_low_confidence(0.25) benign(0.003) TCGA-GC-A6I3-01 17 39340939 39340939 C T KRTAP4-1 Silent p.Q56Q 0.13 TCGA-GC-A6I3-01 17 42745037 42745037 T G C17orf104 Missense_Mutation p.N586K 0.26 deleterious(0) probably_damaging(0.94) TCGA-GC-A6I3-01 17 44064438 44064438 G A MAPT Missense_Mutation p.G387R 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-GC-A6I3-01 17 46000540 46000540 G A SP2 Silent p.L424L 0.16 TCGA-GC-A6I3-01 17 46937777 46937777 A G CALCOCO2 Silent p.Q394Q 0.10 TCGA-GC-A6I3-01 17 5307512 5307512 C G NUP88 Missense_Mutation p.E367Q 0.13 deleterious(0) probably_damaging(0.98) TCGA-GC-A6I3-01 17 62817937 62817937 C A RNU7-115P 3'Flank 0.22 TCGA-GC-A6I3-01 17 62817952 62817952 C A RNU7-115P 3'Flank 0.24 TCGA-GC-A6I3-01 17 62817983 62817983 C G RNU7-115P 3'Flank 0.13 TCGA-GC-A6I3-01 17 73322005 73322005 A T GRB2 Silent p.A91A 0.13 TCGA-GC-A6I3-01 17 7478464 7478464 C G EIF4A1 Missense_Mutation p.S78C 0.06 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I3-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.28 tolerated(0.1) benign(0.438) TCGA-GC-A6I3-01 17 78280075 78280075 G T RNF213 Missense_Mutation p.R745I 0.11 benign(0.033) TCGA-GC-A6I3-01 17 78280076 78280076 A C RNF213 Missense_Mutation p.R745S 0.10 benign(0.001) TCGA-GC-A6I3-01 18 13092377 13092377 A G CEP192 Silent p.V2035V 0.20 TCGA-GC-A6I3-01 18 2913087 2913087 T C EMILIN2 Silent p.D949D 0.13 TCGA-GC-A6I3-01 18 29793211 29793211 C T MEP1B Missense_Mutation p.S423L 0.17 deleterious(0) probably_damaging(0.983) TCGA-GC-A6I3-01 18 74639027 74639027 G A ZNF236 Silent p.G1352G 0.12 TCGA-GC-A6I3-01 19 10078593 10078593 G A COL5A3 Missense_Mutation p.S1464L 0.12 unknown(0) TCGA-GC-A6I3-01 19 10748326 10748326 A T SLC44A2 Missense_Mutation p.E533V 0.15 deleterious(0.03) benign(0.189) TCGA-GC-A6I3-01 19 11322787 11322787 G A DOCK6 Missense_Mutation p.S1511L 0.17 deleterious(0) possibly_damaging(0.67) TCGA-GC-A6I3-01 19 14938808 14938808 C T OR7A5 Silent p.L82L 0.13 TCGA-GC-A6I3-01 19 15341819 15341819 G T EPHX3 Silent p.V190V 0.22 TCGA-GC-A6I3-01 19 2225398 2225398 A T DOT1L Missense_Mutation p.K1203I 0.23 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-GC-A6I3-01 19 2717724 2717724 G A DIRAS1 Silent p.F27F 0.20 TCGA-GC-A6I3-01 19 31767577 31767577 T A TSHZ3 Missense_Mutation p.Y1041F 0.15 tolerated(1) benign(0.137) TCGA-GC-A6I3-01 19 35250786 35250786 C G ZNF599 Missense_Mutation p.R307P 0.12 deleterious(0.01) benign(0.09) TCGA-GC-A6I3-01 19 36517131 36517131 G C CLIP3 Nonsense_Mutation p.S200* 0.14 TCGA-GC-A6I3-01 19 36518043 36518043 G A CLIP3 Silent p.I99I 0.06 TCGA-GC-A6I3-01 19 38743614 38743614 C T PPP1R14A Missense_Mutation p.E68K 0.12 deleterious(0) probably_damaging(0.996) TCGA-GC-A6I3-01 19 38976604 38976604 C T RYR1 Missense_Mutation p.S1770L 0.10 benign(0.365) TCGA-GC-A6I3-01 19 41778075 41778075 G A HNRNPUL1 Silent p.Q169Q 0.18 TCGA-GC-A6I3-01 19 50550343 50550343 A G ZNF473 3'UTR 0.32 TCGA-GC-A6I3-01 19 54245826 54245826 T C MIR520H RNA 0.23 TCGA-GC-A6I3-01 19 54387438 54387438 C T PRKCG Nonsense_Mutation p.R76* 0.30 TCGA-GC-A6I3-01 19 54756736 54756736 G A LILRB5 Missense_Mutation p.S491L 0.10 tolerated(0.15) benign(0.004) TCGA-GC-A6I3-01 19 55855167 55855167 G T SUV420H2 Missense_Mutation p.R169L 0.26 deleterious(0.01) possibly_damaging(0.832) TCGA-GC-A6I3-01 19 6426511 6426511 C A SLC25A41 Missense_Mutation p.Q334H 0.12 deleterious(0) probably_damaging(0.995) TCGA-GC-A6I3-01 19 6750315 6750315 G T TRIP10 Nonsense_Mutation p.E414* 0.16 TCGA-GC-A6I3-01 19 8151193 8151193 G T FBN3 Missense_Mutation p.H2257Q 0.11 tolerated(0.23) benign(0.018) TCGA-GC-A6I3-01 1 13497762 13497762 C T PRAMEF16 Silent p.I353I 0.24 TCGA-GC-A6I3-01 1 144930789 144930789 C T PDE4DIP Intron 0.07 TCGA-GC-A6I3-01 1 149399062 149399062 C T HIST2H3PS2 3'Flank 0.11 TCGA-GC-A6I3-01 1 150280752 150280752 C G MRPS21 3'UTR 0.17 TCGA-GC-A6I3-01 1 152187833 152187833 G C HRNR Missense_Mutation p.S2091C 0.09 unknown(0) TCGA-GC-A6I3-01 1 159272148 159272148 G A FCER1A 5'UTR 0.14 TCGA-GC-A6I3-01 1 162740264 162740264 G T DDR2 Missense_Mutation p.R489L 0.11 tolerated(0.12) benign(0.007) TCGA-GC-A6I3-01 1 16456859 16456859 G A EPHA2 Missense_Mutation p.S844F 0.17 deleterious(0.04) probably_damaging(1) TCGA-GC-A6I3-01 1 16456900 16456900 G T EPHA2 Silent p.I830I 0.21 TCGA-GC-A6I3-01 1 1653117 1653117 C G CDK11A Missense_Mutation p.E49Q 0.14 deleterious_low_confidence(0.05) probably_damaging(0.974) TCGA-GC-A6I3-01 1 16913566 16913566 C A NBPF1 Missense_Mutation p.D253Y 0.07 deleterious(0) probably_damaging(0.934) TCGA-GC-A6I3-01 1 170513955 170513955 G A GORAB Missense_Mutation p.D236N 0.10 deleterious(0) probably_damaging(0.996) TCGA-GC-A6I3-01 1 179310414 179310414 C T SOAT1 Missense_Mutation p.P250L 0.10 deleterious(0.02) probably_damaging(0.982) TCGA-GC-A6I3-01 1 196876554 196876554 C T CFHR4 Missense_Mutation p.S241F 0.07 tolerated(0.27) probably_damaging(0.939) TCGA-GC-A6I3-01 1 202863851 202863851 C G KLHL12 Missense_Mutation p.D388H 0.14 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 1 21795231 21795231 G A NBPF3 Missense_Mutation p.G62S 0.08 tolerated(0.26) benign(0.079) TCGA-GC-A6I3-01 1 218480886 218480886 C G RRP15 Missense_Mutation p.S206C 0.06 deleterious(0.01) benign(0.415) TCGA-GC-A6I3-01 1 226127680 226127680 C T LEFTY2 Silent p.A91A 0.13 TCGA-GC-A6I3-01 1 237791238 237791238 C A RYR2 Silent p.R2100R 0.21 TCGA-GC-A6I3-01 1 237972260 237972260 C A RYR2 Missense_Mutation p.F4786L 0.25 possibly_damaging(0.787) TCGA-GC-A6I3-01 1 247737501 247737501 C T GCSAML Silent p.I75I 0.14 TCGA-GC-A6I3-01 1 248308922 248308922 T C OR2M5 Missense_Mutation p.I158T 0.30 deleterious(0.03) benign(0.367) TCGA-GC-A6I3-01 1 248366921 248366921 A G OR2M3 Silent p.L184L 0.25 TCGA-GC-A6I3-01 1 25573363 25573363 G C C1orf63 Missense_Mutation p.S31W 0.13 deleterious_low_confidence(0) unknown(0) TCGA-GC-A6I3-01 1 26603791 26603791 C G CEP85 3'UTR 0.13 TCGA-GC-A6I3-01 1 29189406 29189406 C T OPRD1 Missense_Mutation p.R244C 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-GC-A6I3-01 1 46655178 46655178 C T POMGNT1 Missense_Mutation p.R616Q 0.21 possibly_damaging(0.652) TCGA-GC-A6I3-01 1 47399668 47399668 C G CYP4A11 Missense_Mutation p.R391T 0.12 deleterious(0) probably_damaging(0.956) TCGA-GC-A6I3-01 1 52498365 52498365 C G KTI12 3'UTR 0.13 TCGA-GC-A6I3-01 1 6027390 6027390 G C NPHP4 Silent p.L162L 0.16 TCGA-GC-A6I3-01 1 63885089 63885089 A G ALG6 Missense_Mutation p.K346E 0.09 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 1 74663830 74663830 G A LRRIQ3 5'UTR 0.23 TCGA-GC-A6I3-01 1 7724730 7724730 G T CAMTA1 Missense_Mutation p.G708V 0.10 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-GC-A6I3-01 1 79392687 79392687 C T ELTD1 Missense_Mutation p.D323N 0.12 tolerated(0.53) benign(0.007) TCGA-GC-A6I3-01 1 82447616 82447616 C T LPHN2 Nonsense_Mutation p.Q1063* 0.10 TCGA-GC-A6I3-01 1 92511153 92511153 C T EPHX4 Silent p.I180I 0.08 TCGA-GC-A6I3-01 1 98060676 98060676 C T DPYD Silent p.Q299Q 0.13 TCGA-GC-A6I3-01 20 10602054 10602054 G C SLX4IP Silent p.L166L 0.22 TCGA-GC-A6I3-01 20 16025230 16025230 C G MACROD2 Intron 0.12 TCGA-GC-A6I3-01 20 34827931 34827931 C T AAR2 Silent p.G47G 0.14 TCGA-GC-A6I3-01 20 35693864 35693864 C T RBL1 Missense_Mutation p.E287K 0.15 tolerated(1) benign(0.005) TCGA-GC-A6I3-01 20 46267761 46267761 G C NCOA3 Missense_Mutation p.S841T 0.09 tolerated(0.24) benign(0.284) TCGA-GC-A6I3-01 20 47865756 47865756 C T ZNFX1 Missense_Mutation p.E1269K 0.06 tolerated(0.31) benign(0.046) TCGA-GC-A6I3-01 20 57415891 57415891 C A RP4-806M20.3 5'Flank 0.08 TCGA-GC-A6I3-01 20 60882753 60882753 C A ADRM1 Missense_Mutation p.P242Q 0.15 tolerated(0.09) unknown(0) TCGA-GC-A6I3-01 20 62166352 62166352 G A PTK6 Silent p.N97N 0.14 TCGA-GC-A6I3-01 20 62187184 62187184 G C C20orf195 Silent p.L56L 0.06 TCGA-GC-A6I3-01 21 27137084 27137084 C T GABPA Silent p.L374L 0.07 TCGA-GC-A6I3-01 21 28304421 28304421 C T ADAMTS5 Missense_Mutation p.E651K 0.10 tolerated(0.07) probably_damaging(0.971) TCGA-GC-A6I3-01 21 31720845 31720845 C A KRTAP23-1 Missense_Mutation p.G27V 0.35 tolerated_low_confidence(0.29) unknown(0) TCGA-GC-A6I3-01 21 38528984 38528984 C T TTC3 Missense_Mutation p.S923F 0.08 deleterious(0.03) possibly_damaging(0.786) TCGA-GC-A6I3-01 21 43982208 43982208 G A SLC37A1 Silent p.L334L 0.11 TCGA-GC-A6I3-01 22 23115017 23115017 G C IGLV3-12 Missense_Mutation p.E97Q 0.30 tolerated(1) benign(0.006) TCGA-GC-A6I3-01 22 37699296 37699296 C T CYTH4 Silent p.D183D 0.14 TCGA-GC-A6I3-01 22 42078398 42078398 G A NHP2L1 5'UTR 0.13 TCGA-GC-A6I3-01 2 10126289 10126289 C T GRHL1 Missense_Mutation p.S383F 0.13 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I3-01 2 113404605 113404605 G A SLC20A1 Missense_Mutation p.S67N 0.21 deleterious(0) probably_damaging(0.967) TCGA-GC-A6I3-01 2 135107418 135107418 A G MGAT5 Silent p.E385E 0.07 TCGA-GC-A6I3-01 2 16082333 16082333 C G MYCN Missense_Mutation p.I49M 0.10 deleterious(0) probably_damaging(0.98) TCGA-GC-A6I3-01 2 179413332 179413332 G C TTN Missense_Mutation p.I31007M 0.06 TCGA-GC-A6I3-01 2 196640662 196640662 C T DNAH7 Missense_Mutation p.A3704T 0.17 tolerated(0.53) benign(0.01) TCGA-GC-A6I3-01 2 207172503 207172503 C G ZDBF2 Missense_Mutation p.S1084C 0.30 deleterious(0) probably_damaging(0.923) TCGA-GC-A6I3-01 2 220136105 220136105 C T TUBA4B RNA 0.22 TCGA-GC-A6I3-01 2 231926974 231926974 C A PSMD1 Missense_Mutation p.H25N 0.10 tolerated(0.17) benign(0.001) TCGA-GC-A6I3-01 2 29416734 29416734 C T ALK Missense_Mutation p.E1407K 0.28 deleterious(0) probably_damaging(0.997) TCGA-GC-A6I3-01 2 3481493 3481493 T G TRAPPC12 Missense_Mutation p.Y602D 0.07 deleterious(0.02) possibly_damaging(0.886) TCGA-GC-A6I3-01 2 37365489 37365489 G C EIF2AK2 Missense_Mutation p.S204C 0.15 tolerated(0.13) benign(0.008) TCGA-GC-A6I3-01 2 43986079 43986079 C T PLEKHH2 Missense_Mutation p.R1328W 0.15 deleterious(0) probably_damaging(0.981) TCGA-GC-A6I3-01 2 71209212 71209212 A G ANKRD53 Missense_Mutation p.N255S 0.24 deleterious(0.03) possibly_damaging(0.835) TCGA-GC-A6I3-01 2 74734257 74734257 C G PCGF1 Missense_Mutation p.K37N 0.31 deleterious(0.02) possibly_damaging(0.543) TCGA-GC-A6I3-01 2 85982004 85982004 G T ATOH8 Missense_Mutation p.R231L 0.07 deleterious(0) probably_damaging(0.998) TCGA-GC-A6I3-01 2 95815207 95815207 C G ZNF514 Missense_Mutation p.E341D 0.13 deleterious(0.01) possibly_damaging(0.85) TCGA-GC-A6I3-01 2 96992421 96992421 G A ITPRIPL1 Missense_Mutation p.A26T 0.07 deleterious(0.04) benign(0.037) TCGA-GC-A6I3-01 3 113320461 113320461 C G SIDT1 Missense_Mutation p.P358A 0.08 tolerated(0.17) possibly_damaging(0.507) TCGA-GC-A6I3-01 3 119153695 119153695 G A TMEM39A Silent p.L383L 0.29 TCGA-GC-A6I3-01 3 12531405 12531405 G A TSEN2 Missense_Mutation p.E36K 0.10 tolerated(0.11) benign(0.439) TCGA-GC-A6I3-01 3 130287443 130287443 G C COL6A6 Missense_Mutation p.R799P 0.28 tolerated(0.21) possibly_damaging(0.458) TCGA-GC-A6I3-01 3 148858099 148858099 G C HPS3 Missense_Mutation p.E176Q 0.11 deleterious(0) probably_damaging(0.969) TCGA-GC-A6I3-01 3 154146541 154146541 G A GPR149 Silent p.C288C 0.32 TCGA-GC-A6I3-01 3 169574601 169574601 C T LRRC31 Missense_Mutation p.V183M 0.15 deleterious(0) probably_damaging(0.985) TCGA-GC-A6I3-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.24 deleterious(0.02) probably_damaging(0.965) TCGA-GC-A6I3-01 3 183442278 183442278 A T YEATS2 Silent p.R203R 0.11 TCGA-GC-A6I3-01 3 186383914 186383914 G A HRG Missense_Mutation p.E32K 0.36 tolerated(0.43) possibly_damaging(0.621) TCGA-GC-A6I3-01 3 186395192 186395192 C T HRG Silent p.P366P 0.21 TCGA-GC-A6I3-01 3 188925281 188925281 G C TPRG1 Silent p.P36P 0.05 TCGA-GC-A6I3-01 3 33908119 33908119 C T PDCD6IP 3'UTR 0.25 TCGA-GC-A6I3-01 3 37089167 37089167 T C MLH1 Missense_Mutation p.I630T 0.14 deleterious(0) probably_damaging(0.992) TCGA-GC-A6I3-01 3 37368269 37368269 C G GOLGA4 Nonsense_Mutation p.S1653* 0.07 TCGA-GC-A6I3-01 3 50421757 50421757 C T CACNA2D2 Silent p.E174E 0.20 TCGA-GC-A6I3-01 3 52512227 52512227 G A NISCH Missense_Mutation p.E368K 0.10 deleterious(0.01) benign(0.037) TCGA-GC-A6I3-01 3 58519811 58519811 G T ACOX2 Missense_Mutation p.L129M 0.16 tolerated(0.16) probably_damaging(0.986) TCGA-GC-A6I3-01 4 104640347 104640347 G T TACR3 Missense_Mutation p.N162K 0.15 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 4 109895713 109895713 G A COL25A1 Silent p.G147G 0.08 TCGA-GC-A6I3-01 4 126371114 126371114 T C FAT4 Silent p.P2981P 0.12 TCGA-GC-A6I3-01 4 140810801 140810801 G C MAML3 Missense_Mutation p.L597V 0.14 probably_damaging(0.996) TCGA-GC-A6I3-01 4 175897155 175897155 C T ADAM29 Missense_Mutation p.S160L 0.11 tolerated(0.09) benign(0.001) TCGA-GC-A6I3-01 4 175898920 175898920 C A ADAM29 Silent p.S748S 0.14 TCGA-GC-A6I3-01 5 140167060 140167060 C T PCDHA1 Silent p.F395F 0.18 TCGA-GC-A6I3-01 5 140773308 140773308 G A PCDHGA8 Missense_Mutation p.E310K 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-GC-A6I3-01 5 180377609 180377609 G C BTNL8 3'UTR 0.24 TCGA-GC-A6I3-01 5 3599852 3599852 G T IRX1 Missense_Mutation p.D264Y 0.11 deleterious(0.01) benign(0.174) TCGA-GC-A6I3-01 5 60067798 60067798 C T ELOVL7 Missense_Mutation p.E63K 0.10 tolerated(0.19) benign(0.174) TCGA-GC-A6I3-01 5 68651779 68651779 C T TAF9 Silent p.E41E 0.25 TCGA-GC-A6I3-01 5 68660882 68660882 G A TAF9 Missense_Mutation p.T228I 0.24 tolerated(0.06) possibly_damaging(0.703) TCGA-GC-A6I3-01 5 70357103 70357103 C T GTF2H2 Missense_Mutation p.G56E 0.09 deleterious(0) probably_damaging(0.979) TCGA-GC-A6I3-01 5 70786834 70786834 G C BDP1 Missense_Mutation p.E506Q 0.22 tolerated(0.09) probably_damaging(0.999) TCGA-GC-A6I3-01 5 76335389 76335389 A G AGGF1 Missense_Mutation p.I239V 0.25 deleterious(0.01) possibly_damaging(0.803) TCGA-GC-A6I3-01 5 83362398 83362398 T G EDIL3 Missense_Mutation p.T227P 0.16 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I3-01 5 83362399 83362399 A T EDIL3 Silent p.V226V 0.16 TCGA-GC-A6I3-01 5 95099235 95099235 G A RHOBTB3 Missense_Mutation p.E358K 0.11 tolerated(0.11) benign(0.194) TCGA-GC-A6I3-01 6 100061944 100061944 C T PRDM13 Missense_Mutation p.A478V 0.07 deleterious_low_confidence(0.01) benign(0.108) TCGA-GC-A6I3-01 6 110301327 110301327 C T GPR6 Missense_Mutation p.R338C 0.09 deleterious(0) probably_damaging(0.988) TCGA-GC-A6I3-01 6 112499328 112499328 A T LAMA4 Missense_Mutation p.I395N 0.17 deleterious(0) probably_damaging(0.932) TCGA-GC-A6I3-01 6 149691130 149691130 A G TAB2 5'UTR 0.16 TCGA-GC-A6I3-01 6 153293475 153293475 G C FBXO5 Missense_Mutation p.Q342E 0.16 deleterious(0.04) benign(0.055) TCGA-GC-A6I3-01 6 158567876 158567876 G C SERAC1 Nonsense_Mutation p.S142* 0.11 TCGA-GC-A6I3-01 6 32023670 32023670 C G TNXB Missense_Mutation p.E2809Q 0.10 benign(0.035) TCGA-GC-A6I3-01 6 35047314 35047314 G A ANKS1A Missense_Mutation p.G769R 0.13 deleterious(0) probably_damaging(1) TCGA-GC-A6I3-01 6 84567067 84567067 G C RIPPLY2 Missense_Mutation p.D116H 0.16 deleterious(0) probably_damaging(0.988) TCGA-GC-A6I3-01 7 100675543 100675543 C A MUC17 Silent p.L282L 0.08 TCGA-GC-A6I3-01 7 104752891 104752891 C G KMT2E Missense_Mutation p.S1563C 0.12 deleterious_low_confidence(0) benign(0.129) TCGA-GC-A6I3-01 7 127230187 127230187 A T ARF5 Missense_Mutation p.K109M 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.809) TCGA-GC-A6I3-01 7 127238525 127238525 C T FSCN3 Silent p.L333L 0.38 TCGA-GC-A6I3-01 7 138982560 138982560 A C UBN2 Missense_Mutation p.K1341T 0.26 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-GC-A6I3-01 7 142428782 142428782 C T TRBV28 Missense_Mutation p.H48Y 0.08 tolerated(0.13) benign(0.376) TCGA-GC-A6I3-01 7 150217715 150217715 A T GIMAP7 Missense_Mutation p.E218V 0.16 deleterious(0.01) possibly_damaging(0.501) TCGA-GC-A6I3-01 7 154863297 154863297 C A HTR5A Missense_Mutation p.R230S 0.24 deleterious(0.04) possibly_damaging(0.826) TCGA-GC-A6I3-01 7 156758994 156758994 A C NOM1 Missense_Mutation p.E688D 0.33 deleterious(0.03) probably_damaging(0.968) TCGA-GC-A6I3-01 7 23221686 23221686 C T NUPL2 5'UTR 0.18 TCGA-GC-A6I3-01 7 23811886 23811886 A T STK31 Missense_Mutation p.N652Y 0.38 deleterious(0.03) benign(0.414) TCGA-GC-A6I3-01 7 26765126 26765126 A G SKAP2 Silent p.D239D 0.35 TCGA-GC-A6I3-01 7 27238031 27238031 G C HOXA13 Missense_Mutation p.S318C 0.37 deleterious(0.03) probably_damaging(0.948) TCGA-GC-A6I3-01 7 39472745 39472745 T A POU6F2 Missense_Mutation p.L366M 0.12 deleterious(0) unknown(0) TCGA-GC-A6I3-01 7 47879074 47879074 G T PKD1L1 Silent p.T1913T 0.13 TCGA-GC-A6I3-01 7 5567674 5567676 CTT - ACTB In_Frame_Del p.K315del 0.29 TCGA-GC-A6I3-01 7 74148314 74148314 G T GTF2I Missense_Mutation p.A452S 0.06 tolerated(0.77) benign(0.031) TCGA-GC-A6I3-01 7 75634644 75634644 C G STYXL1 Missense_Mutation p.D178H 0.06 deleterious(0) possibly_damaging(0.903) TCGA-GC-A6I3-01 7 82389975 82389975 G A PCLO Missense_Mutation p.P5090S 0.04 unknown(0) TCGA-GC-A6I3-01 7 82545848 82545848 C T PCLO Silent p.K3818K 0.05 TCGA-GC-A6I3-01 7 84685095 84685095 A C SEMA3D Missense_Mutation p.S267A 0.30 tolerated(0.33) benign(0.005) TCGA-GC-A6I3-01 8 107754479 107754479 G A OXR1 Silent p.L783L 0.14 TCGA-GC-A6I3-01 8 110503228 110503228 C T PKHD1L1 Nonsense_Mutation p.R3338* 0.32 TCGA-GC-A6I3-01 8 133723133 133723133 G C TMEM71 3'UTR 0.12 TCGA-GC-A6I3-01 8 142481285 142481285 C A MROH5 3'UTR 0.07 TCGA-GC-A6I3-01 8 22053101 22053101 G T BMP1 Splice_Site p.X589_splice 0.11 TCGA-GC-A6I3-01 8 25341528 25341528 G A CDCA2 Silent p.K389K 0.28 TCGA-GC-A6I3-01 8 37793258 37793258 G T GOT1L1 Missense_Mutation p.T298N 0.83 deleterious(0.01) probably_damaging(0.997) TCGA-GC-A6I3-01 8 52287282 52287282 G A PXDNL Silent p.G1189G 0.33 TCGA-GC-A6I3-01 8 61748631 61748631 G A CHD7 Splice_Site p.X1260_splice 0.18 TCGA-GC-A6I3-01 8 68968118 68968118 G A PREX2 Missense_Mutation p.E383K 0.08 tolerated(0.07) probably_damaging(0.98) TCGA-GC-A6I3-01 8 69633626 69633626 T A C8orf34 Missense_Mutation p.M453K 0.10 deleterious(0.02) possibly_damaging(0.466) TCGA-GC-A6I3-01 8 87226753 87226753 T C SLC7A13 Silent p.L434L 0.35 TCGA-GC-A6I3-01 8 87242577 87242577 G A SLC7A13 5'UTR 0.29 TCGA-GC-A6I3-01 8 87570703 87570703 C T CPNE3 3'UTR 0.13 TCGA-GC-A6I3-01 8 87679219 87679219 G C CNGB3 Missense_Mutation p.I262M 0.09 deleterious(0.01) benign(0.388) TCGA-GC-A6I3-01 8 94935518 94935518 A T PDP1 Nonsense_Mutation p.K436* 0.11 TCGA-GC-A6I3-01 8 95164112 95164112 C A CDH17 Nonsense_Mutation p.E594* 0.07 TCGA-GC-A6I3-01 9 135933460 135933460 G A GTF3C5 3'UTR 0.15 TCGA-GC-A6I3-01 9 16437132 16437132 C T BNC2 Missense_Mutation p.E354K 0.06 deleterious(0.03) possibly_damaging(0.815) TCGA-GC-A6I3-01 9 5920200 5920200 T C KIAA2026 Silent p.Q1932Q 0.46 TCGA-GC-A6I3-01 9 91262332 91262333 - C RP13-60M5.2 RNA 0.10 TCGA-GC-A6I3-01 9 94495618 94495618 C A ROR2 Silent p.A241A 0.48 TCGA-GC-A6I3-01 X 107037473 107037473 T A NCBP2L Missense_Mutation p.L8Q 0.21 tolerated(0.07) benign(0.094) TCGA-GC-A6I3-01 X 38134400 38134400 C G TM4SF2 Intron 0.15 TCGA-GC-A6I3-01 X 39911436 39911436 C T BCOR Missense_Mutation p.E1732K 0.12 deleterious(0.01) benign(0.212) TCGA-GC-A6I3-01 X 48542335 48542335 G A WAS Silent p.E31E 0.17 TCGA-GC-A6I3-01 X 48832431 48832431 G T GRIPAP1 Silent p.I759I 0.17 TCGA-GC-A6I3-01 X 50350406 50350406 C T SHROOM4 Missense_Mutation p.G1246R 0.09 tolerated(0.2) benign(0.12) TCGA-GC-A6I3-01 X 53611263 53611263 G C HUWE1 Missense_Mutation p.L1682V 0.11 benign(0.057) TCGA-GC-A6I3-01 X 54186019 54186019 C T FAM120C Missense_Mutation p.E244K 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-GC-A6I3-01 X 55052286 55052286 G C ALAS2 Missense_Mutation p.Q50E 0.16 tolerated(0.56) benign(0.006) TCGA-GC-A6I3-01 X 56590641 56590641 C G UBQLN2 Missense_Mutation p.S112C 0.14 tolerated(0.06) possibly_damaging(0.894) TCGA-GC-A6I3-01 X 63412026 63412026 C T AMER1 Missense_Mutation p.E381K 0.16 deleterious(0.01) benign(0.301) TCGA-GC-A6I3-01 X 63568657 63568657 A G MTMR8 Silent p.C205C 0.08 TCGA-GC-A6I3-01 X 69549359 69549359 C G KIF4A Missense_Mutation p.R295G 0.13 deleterious(0) probably_damaging(0.999) TCGA-GC-A6I3-01 X 70627847 70627847 C G TAF1 Silent p.V1430V 0.25 TCGA-GC-A6I3-01 X 90691530 90691530 G A PABPC5 Silent p.L318L 0.12 TCGA-GD-A2C5-01 10 102738085 102738085 G C SEMA4G Missense_Mutation p.E157Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 10 105209459 105209459 C - CALHM2 Frame_Shift_Del p.W80* 0.28 TCGA-GD-A2C5-01 10 11207533 11207533 G A CELF2 Silent p.Q53Q 0.22 TCGA-GD-A2C5-01 10 112641289 112641289 G C PDCD4 Missense_Mutation p.K114N 0.17 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 10 129904961 129904961 C T MKI67 Missense_Mutation p.E1715K 0.21 deleterious(0.03) probably_damaging(1) TCGA-GD-A2C5-01 10 129904991 129904991 C T MKI67 Missense_Mutation p.E1705K 0.18 tolerated(0.43) possibly_damaging(0.525) TCGA-GD-A2C5-01 10 134752189 134752189 C G TTC40 Missense_Mutation p.G147A 0.14 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 10 26998684 26998684 C T PDSS1 Missense_Mutation p.H152Y 0.19 tolerated(0.9) benign(0.008) TCGA-GD-A2C5-01 10 37506789 37506789 G C ANKRD30A Missense_Mutation p.E1028Q 0.21 tolerated(0.39) benign(0.002) TCGA-GD-A2C5-01 10 50947854 50947854 G T OGDHL Silent p.P724P 0.32 TCGA-GD-A2C5-01 10 71144659 71144659 G A HK1 Silent p.T613T 0.05 TCGA-GD-A2C5-01 10 74100797 74100797 C T DNAJB12 Missense_Mutation p.D231N 0.20 deleterious(0.01) probably_damaging(1) TCGA-GD-A2C5-01 10 75301468 75301468 G A USP54 Nonsense_Mutation p.R201* 0.22 TCGA-GD-A2C5-01 10 76993969 76993969 C T COMTD1 Silent p.G217G 0.09 TCGA-GD-A2C5-01 10 96018855 96018855 C G PLCE1 Silent p.L1254L 0.21 TCGA-GD-A2C5-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.55 TCGA-GD-A2C5-01 10 98064410 98064410 C T DNTT Silent p.L52L 0.17 TCGA-GD-A2C5-01 10 99123608 99123608 C T RRP12 Intron 0.44 TCGA-GD-A2C5-01 11 12248632 12248632 C G MICAL2 Missense_Mutation p.S650C 0.18 tolerated(0.07) benign(0.345) TCGA-GD-A2C5-01 11 33631370 33631370 G T KIAA1549L Nonsense_Mutation p.G1416* 0.33 TCGA-GD-A2C5-01 11 45671793 45671793 G C CHST1 Silent p.L227L 0.41 TCGA-GD-A2C5-01 11 48267481 48267481 C T OR4X2 Missense_Mutation p.P276S 0.35 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 11 48328337 48328337 C T OR4S1 Missense_Mutation p.A188V 0.56 deleterious(0.02) possibly_damaging(0.515) TCGA-GD-A2C5-01 11 5687293 5687293 C G TRIM5 Missense_Mutation p.L262F 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-GD-A2C5-01 11 57379282 57379282 C T SERPING1 Silent p.L374L 0.39 TCGA-GD-A2C5-01 11 60641104 60641104 C T ZP1 Intron 0.15 TCGA-GD-A2C5-01 11 6292495 6292495 C T CCKBR Missense_Mutation p.R356C 0.21 deleterious(0) benign(0.077) TCGA-GD-A2C5-01 11 63971071 63971071 G A STIP1 Silent p.Q512Q 0.18 TCGA-GD-A2C5-01 11 65481068 65481068 G A KAT5 Missense_Mutation p.R182Q 0.22 tolerated(0.38) benign(0.241) TCGA-GD-A2C5-01 11 66083095 66083095 C T CD248 Silent p.V468V 0.22 TCGA-GD-A2C5-01 11 66473242 66473242 C T SPTBN2 Missense_Mutation p.E574K 0.26 tolerated(0.75) benign(0.338) TCGA-GD-A2C5-01 11 70194497 70194497 G T PPFIA1 Nonsense_Mutation p.E712* 0.28 TCGA-GD-A2C5-01 11 77629999 77629999 G C INTS4 Nonsense_Mutation p.S597* 0.13 TCGA-GD-A2C5-01 11 95591730 95591730 G C MTMR2 Missense_Mutation p.L179V 0.20 deleterious(0.02) benign(0.322) TCGA-GD-A2C5-01 12 11002060 11002060 T C PRR4 5'UTR 0.10 TCGA-GD-A2C5-01 12 110581342 110581342 G C IFT81 Missense_Mutation p.E313Q 0.15 tolerated(0.23) benign(0.004) TCGA-GD-A2C5-01 12 117662862 117662862 C T NOS1 Missense_Mutation p.R1296Q 0.20 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 12 120882649 120882649 G A TRIAP1 3'UTR 0.18 TCGA-GD-A2C5-01 12 122958378 122958378 G A ZCCHC8 Missense_Mutation p.S597F 0.20 tolerated(0.07) benign(0.045) TCGA-GD-A2C5-01 12 124236904 124236904 A T ATP6V0A2 Silent p.G710G 0.19 TCGA-GD-A2C5-01 12 13208508 13208508 G A KIAA1467 Missense_Mutation p.E21K 0.24 deleterious(0) probably_damaging(0.997) TCGA-GD-A2C5-01 12 133210898 133210898 C G POLE Missense_Mutation p.D1960H 0.22 deleterious(0.04) benign(0.149) TCGA-GD-A2C5-01 12 15733754 15733754 G C PTPRO Missense_Mutation p.E1041Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 12 21358897 21358897 A G SLCO1B1 Missense_Mutation p.N476S 0.21 tolerated(0.24) benign(0.004) TCGA-GD-A2C5-01 12 41337481 41337481 A T CNTN1 Missense_Mutation p.N488Y 0.16 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 12 46598164 46598164 G C SLC38A1 Missense_Mutation p.P248A 0.17 tolerated(0.14) benign(0.014) TCGA-GD-A2C5-01 12 48240460 48240460 C T VDR Missense_Mutation p.R346H 0.44 tolerated(0.12) benign(0.009) TCGA-GD-A2C5-01 12 49434818 49434818 G C KMT2D Silent p.L2245L 0.25 TCGA-GD-A2C5-01 12 52845415 52845415 G C KRT6B Missense_Mutation p.L150V 0.12 tolerated(0.47) benign(0.2) TCGA-GD-A2C5-01 12 53004528 53004528 C T KRT73 Missense_Mutation p.G401D 0.15 tolerated(0.75) benign(0.061) TCGA-GD-A2C5-01 12 55794819 55794819 C A OR6C65 Silent p.S169S 0.42 TCGA-GD-A2C5-01 12 56998908 56998908 G A BAZ2A Silent p.V901V 0.14 TCGA-GD-A2C5-01 12 70066697 70066697 C G BEST3 Missense_Mutation p.E306Q 0.21 deleterious(0) probably_damaging(0.987) TCGA-GD-A2C5-01 12 7053209 7053209 G A C12orf57 5'UTR 0.47 TCGA-GD-A2C5-01 12 7076925 7076925 G A PHB2 Missense_Mutation p.R209W 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-GD-A2C5-01 12 70938355 70938355 G A PTPRB Missense_Mutation p.P1826S 0.43 deleterious(0) probably_damaging(0.954) TCGA-GD-A2C5-01 12 71977759 71977759 C G LGR5 Missense_Mutation p.L657V 0.21 tolerated(0.14) benign(0.019) TCGA-GD-A2C5-01 12 7842947 7842947 C G GDF3 Missense_Mutation p.E208Q 0.31 tolerated(0.34) benign(0.198) TCGA-GD-A2C5-01 12 8205417 8205417 G C FOXJ2 Missense_Mutation p.D566H 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GD-A2C5-01 13 26793668 26793668 T C RNF6 Missense_Mutation p.Y40C 0.30 deleterious(0) possibly_damaging(0.86) TCGA-GD-A2C5-01 13 28537233 28537233 C T CDX2 3'UTR 0.21 TCGA-GD-A2C5-01 13 29287107 29287107 C T SLC46A3 Missense_Mutation p.R257Q 0.24 tolerated(0.07) benign(0.037) TCGA-GD-A2C5-01 13 36424789 36424789 G C DCLK1 Intron 0.25 TCGA-GD-A2C5-01 13 42623082 42623082 C G DGKH Missense_Mutation p.S58W 0.25 deleterious(0) probably_damaging(0.996) TCGA-GD-A2C5-01 13 61987145 61987145 C T PCDH20 Missense_Mutation p.V363I 0.28 tolerated(0.17) probably_damaging(0.922) TCGA-GD-A2C5-01 13 76427499 76427499 C A LMO7 Missense_Mutation p.Q1313K 0.24 tolerated(0.08) benign(0.234) TCGA-GD-A2C5-01 13 77825302 77825302 C T MYCBP2 Missense_Mutation p.D751N 0.26 benign(0.367) TCGA-GD-A2C5-01 14 100793638 100793638 C T SLC25A47 Silent p.Y86Y 0.06 TCGA-GD-A2C5-01 14 19377844 19377844 T C OR11H12 Missense_Mutation p.L84S 0.33 deleterious(0) probably_damaging(0.997) TCGA-GD-A2C5-01 14 36982361 36982361 C T SFTA3 5'UTR 0.22 TCGA-GD-A2C5-01 14 53539349 53539349 A C DDHD1 Missense_Mutation p.I490R 0.22 deleterious(0) probably_damaging(0.997) TCGA-GD-A2C5-01 14 55203778 55203778 G C SAMD4A Missense_Mutation p.R251P 0.34 deleterious(0.01) possibly_damaging(0.893) TCGA-GD-A2C5-01 14 75469786 75469786 C T EIF2B2 Silent p.S31S 0.32 TCGA-GD-A2C5-01 14 77861083 77861083 G C NOXRED1 Nonsense_Mutation p.S324* 0.19 TCGA-GD-A2C5-01 14 88411957 88411957 C T GALC Missense_Mutation p.R537K 0.33 tolerated(0.13) benign(0.305) TCGA-GD-A2C5-01 14 93649993 93649993 C A MOAP1 Missense_Mutation p.D199Y 0.21 deleterious(0) possibly_damaging(0.813) TCGA-GD-A2C5-01 14 94640771 94640771 C G PPP4R4 5'UTR 0.25 TCGA-GD-A2C5-01 14 94732160 94732160 C G PPP4R4 Missense_Mutation p.R772G 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GD-A2C5-01 14 95562205 95562205 G A DICER1 Silent p.L1684L 0.41 TCGA-GD-A2C5-01 15 38643647 38643647 G A SPRED1 Missense_Mutation p.E373K 0.28 deleterious(0.01) probably_damaging(1) TCGA-GD-A2C5-01 15 40659556 40659556 C G DISP2 Missense_Mutation p.L415V 0.23 deleterious(0.02) benign(0.072) TCGA-GD-A2C5-01 15 53081070 53081070 T C ONECUT1 Missense_Mutation p.S338G 0.32 tolerated(0.08) possibly_damaging(0.834) TCGA-GD-A2C5-01 15 56950642 56950642 C T ZNF280D Silent p.K679K 0.13 TCGA-GD-A2C5-01 15 64380955 64380955 C T FAM96A Missense_Mutation p.E74K 0.14 tolerated(0.14) benign(0.034) TCGA-GD-A2C5-01 15 64381003 64381003 C T FAM96A Missense_Mutation p.E58K 0.16 deleterious(0) possibly_damaging(0.755) TCGA-GD-A2C5-01 15 67649729 67649729 G C IQCH Silent p.V228V 0.19 TCGA-GD-A2C5-01 15 69320560 69320560 C G NOX5 Missense_Mutation p.F60L 0.16 deleterious(0.01) benign(0.242) TCGA-GD-A2C5-01 15 84657546 84657546 G A ADAMTSL3 Missense_Mutation p.E1274K 0.12 tolerated(0.81) benign(0.077) TCGA-GD-A2C5-01 15 89859908 89859908 G T POLG 3'UTR 0.18 TCGA-GD-A2C5-01 15 90286520 90286520 C G WDR93 Intron 0.17 TCGA-GD-A2C5-01 15 90771388 90771388 A T SEMA4B Missense_Mutation p.E676V 0.46 tolerated(0.08) possibly_damaging(0.65) TCGA-GD-A2C5-01 15 93467681 93467681 G A CHD2 Missense_Mutation p.E65K 0.33 tolerated(0.09) unknown(0) TCGA-GD-A2C5-01 15 93467687 93467687 G A CHD2 Missense_Mutation p.E67K 0.37 tolerated(0.06) unknown(0) TCGA-GD-A2C5-01 16 16232288 16232288 G A ABCC1 Missense_Mutation p.D1454N 0.22 deleterious(0) probably_damaging(0.98) TCGA-GD-A2C5-01 16 1828497 1828497 G A SPSB3 Silent p.F81F 0.29 TCGA-GD-A2C5-01 16 30749639 30749639 G A SRCAP Missense_Mutation p.E2760K 0.09 unknown(0) TCGA-GD-A2C5-01 16 31051064 31051064 C G STX4 Missense_Mutation p.I278M 0.21 deleterious(0.02) benign(0.237) TCGA-GD-A2C5-01 16 31422500 31422500 G A ITGAD Missense_Mutation p.R487Q 0.20 tolerated(0.25) benign(0.006) TCGA-GD-A2C5-01 16 50118104 50118104 G T HEATR3 Nonsense_Mutation p.E398* 0.07 TCGA-GD-A2C5-01 16 50354583 50354583 C G BRD7 Missense_Mutation p.D536H 0.06 deleterious(0.01) possibly_damaging(0.724) TCGA-GD-A2C5-01 16 54966652 54966652 C T IRX5 Silent p.F164F 0.11 TCGA-GD-A2C5-01 16 64981702 64981702 G T CDH11 Missense_Mutation p.P732H 0.66 deleterious(0.02) probably_damaging(1) TCGA-GD-A2C5-01 16 69419321 69419321 A G TERF2 Missense_Mutation p.S108P 0.11 deleterious(0) possibly_damaging(0.702) TCGA-GD-A2C5-01 16 70154375 70154375 G A PDPR 5'UTR 0.13 TCGA-GD-A2C5-01 16 70908274 70908274 C T HYDIN Missense_Mutation p.E3628K 0.08 possibly_damaging(0.801) TCGA-GD-A2C5-01 17 11700983 11700983 G A DNAH9 Missense_Mutation p.E2765K 0.20 benign(0.091) TCGA-GD-A2C5-01 17 26966333 26966334 - T KIAA0100 Frame_Shift_Ins p.R410Kfs*13 0.41 TCGA-GD-A2C5-01 17 26966617 26966617 G C KIAA0100 Silent p.L353L 0.08 TCGA-GD-A2C5-01 17 27235835 27235835 C T PHF12 Silent p.V808V 0.11 TCGA-GD-A2C5-01 17 27379941 27379941 G A PIPOX Silent p.Q89Q 0.60 TCGA-GD-A2C5-01 17 39120762 39120762 C T KRT39 Missense_Mutation p.E163K 0.22 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 17 39973408 39973408 G A FKBP10 Missense_Mutation p.R115Q 0.18 deleterious(0) probably_damaging(0.962) TCGA-GD-A2C5-01 17 46654260 46654260 C G HOXB4 Missense_Mutation p.E194Q 0.20 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 17 46691841 46691841 C T HOXB8 Missense_Mutation p.V76M 0.22 tolerated(0.27) probably_damaging(0.948) TCGA-GD-A2C5-01 17 48618226 48618226 C T EPN3 Missense_Mutation p.S351L 0.21 deleterious(0.01) benign(0.221) TCGA-GD-A2C5-01 17 48918001 48918001 G C WFIKKN2 Missense_Mutation p.R451P 0.07 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 17 64961035 64961035 G C CACNG4 Missense_Mutation p.R3P 0.38 tolerated(0.17) benign(0.094) TCGA-GD-A2C5-01 17 6526348 6526348 G C KIAA0753 Missense_Mutation p.Q320E 0.27 deleterious(0.01) benign(0.14) TCGA-GD-A2C5-01 17 72741326 72741326 C G RAB37 Intron 0.17 TCGA-GD-A2C5-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.61 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 17 76187059 76187059 G C AFMID Missense_Mutation p.E24D 0.33 tolerated(0.09) benign(0.226) TCGA-GD-A2C5-01 17 76435210 76435210 C T DNAH17 Missense_Mutation p.D3909N 0.23 benign(0.042) TCGA-GD-A2C5-01 17 7680153 7680153 G A DNAH2 Silent p.L1668L 0.71 TCGA-GD-A2C5-01 17 78156494 78156494 C - CARD14 Frame_Shift_Del p.I86Sfs*7 0.28 TCGA-GD-A2C5-01 17 79207319 79207319 C T ENTHD2 Intron 0.24 TCGA-GD-A2C5-01 17 79891091 79891091 C G PYCR1 Nonstop_Mutation p.*320Sext*42 0.41 TCGA-GD-A2C5-01 18 29867522 29867522 C T GAREM Silent p.V346V 0.16 TCGA-GD-A2C5-01 18 31318552 31318552 C G ASXL3 Missense_Mutation p.S395C 0.07 possibly_damaging(0.868) TCGA-GD-A2C5-01 18 33689640 33689640 C T SLC39A6 Silent p.Q728Q 0.16 TCGA-GD-A2C5-01 18 51851180 51851180 G C STARD6 Nonsense_Mutation p.S182* 0.16 TCGA-GD-A2C5-01 18 9535846 9535846 G C RALBP1 Missense_Mutation p.E627Q 0.31 tolerated_low_confidence(0.06) benign(0.038) TCGA-GD-A2C5-01 19 10489097 10489097 G T TYK2 5'UTR 0.10 TCGA-GD-A2C5-01 19 12790678 12790678 G A DHPS Missense_Mutation p.A144V 0.33 deleterious(0) possibly_damaging(0.77) TCGA-GD-A2C5-01 19 12954349 12954349 C T MAST1 Silent p.D85D 0.10 TCGA-GD-A2C5-01 19 14517528 14517528 G C CD97 Missense_Mutation p.E689Q 0.15 tolerated(0.1) possibly_damaging(0.77) TCGA-GD-A2C5-01 19 16552747 16552747 G A EPS15L1 Missense_Mutation p.L41F 0.16 tolerated(0.09) probably_damaging(0.983) TCGA-GD-A2C5-01 19 17373412 17373412 C T USHBP1 Silent p.T197T 0.41 TCGA-GD-A2C5-01 19 17983483 17983483 G A SLC5A5 Missense_Mutation p.E119K 0.09 deleterious(0) benign(0.098) TCGA-GD-A2C5-01 19 18332034 18332034 G A PDE4C Intron 0.29 TCGA-GD-A2C5-01 19 1978449 1978449 C T CSNK1G2 Silent p.I79I 0.22 TCGA-GD-A2C5-01 19 33202726 33202726 G T NUDT19 Nonsense_Mutation p.E331* 0.15 TCGA-GD-A2C5-01 19 35434793 35434793 G A ZNF30 Missense_Mutation p.R309K 0.17 tolerated(0.24) benign(0.009) TCGA-GD-A2C5-01 19 38966027 38966027 C G RYR1 Silent p.L1410L 0.10 TCGA-GD-A2C5-01 19 39390255 39390255 G C SIRT2 5'UTR 0.14 TCGA-GD-A2C5-01 19 39995950 39995950 G C DLL3 Missense_Mutation p.D318H 0.30 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 19 40729535 40729535 C T CNTD2 Intron 0.38 TCGA-GD-A2C5-01 19 41206059 41206059 C T ADCK4 Silent p.T352T 0.46 TCGA-GD-A2C5-01 19 44832455 44832455 G C ZNF112 Missense_Mutation p.Q625E 0.12 deleterious(0.02) probably_damaging(0.964) TCGA-GD-A2C5-01 19 44936420 44936420 G C ZNF229 Nonsense_Mutation p.S72* 0.14 TCGA-GD-A2C5-01 19 45381969 45381969 C T PVRL2 Intron 0.41 TCGA-GD-A2C5-01 19 47259808 47259808 C G FKRP Missense_Mutation p.I367M 0.21 tolerated(0.06) probably_damaging(0.959) TCGA-GD-A2C5-01 19 49425626 49425626 C G NUCB1 Nonsense_Mutation p.S444* 0.31 TCGA-GD-A2C5-01 19 53303586 53303586 G A ZNF28 Silent p.F504F 0.16 TCGA-GD-A2C5-01 19 55453113 55453113 G A NLRP7 5'UTR 0.15 TCGA-GD-A2C5-01 19 58238866 58238866 C G ZNF671 Missense_Mutation p.D11H 0.14 deleterious_low_confidence(0.03) benign(0.001) TCGA-GD-A2C5-01 19 7992973 7992973 C T TIMM44 Missense_Mutation p.D373N 0.18 tolerated(0.23) benign(0.004) TCGA-GD-A2C5-01 19 8808334 8808334 C T ACTL9 Missense_Mutation p.G240S 0.22 tolerated(0.09) probably_damaging(1) TCGA-GD-A2C5-01 19 9073469 9073470 - A MUC16 Frame_Shift_Ins p.S4660Lfs*6 0.28 TCGA-GD-A2C5-01 19 9083641 9083641 G C MUC16 Missense_Mutation p.S2725C 0.19 unknown(0) TCGA-GD-A2C5-01 1 10690119 10690119 C G PEX14 3'UTR 0.25 TCGA-GD-A2C5-01 1 10715772 10715772 G A CASZ1 Silent p.D533D 0.17 TCGA-GD-A2C5-01 1 109635586 109635586 C T TMEM167B Missense_Mutation p.R29C 0.23 deleterious(0.03) benign(0.095) TCGA-GD-A2C5-01 1 110086286 110086286 C T GPR61 Silent p.V214V 0.03 TCGA-GD-A2C5-01 1 110086287 110086287 C A GPR61 Missense_Mutation p.L215I 0.03 tolerated(1) benign(0.088) TCGA-GD-A2C5-01 1 110086421 110086421 C G GPR61 Silent p.L259L 0.03 TCGA-GD-A2C5-01 1 110086532 110086532 C T GPR61 Silent p.F296F 0.04 TCGA-GD-A2C5-01 1 110086556 110086556 C G GPR61 Missense_Mutation p.F304L 0.03 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 1 110086651 110086651 C G GPR61 Missense_Mutation p.S336C 0.03 tolerated(0.08) possibly_damaging(0.484) TCGA-GD-A2C5-01 1 110086715 110086715 C G GPR61 Silent p.V357V 0.03 TCGA-GD-A2C5-01 1 110255280 110255280 C G GSTM5 Nonsense_Mutation p.S26* 0.03 TCGA-GD-A2C5-01 1 110257880 110257880 C A GSTM5 Intron 0.05 TCGA-GD-A2C5-01 1 110257886 110257886 C A GSTM5 Intron 0.05 TCGA-GD-A2C5-01 1 111061247 111061247 C T KCNA10 Missense_Mutation p.E55K 0.14 tolerated_low_confidence(0.06) benign(0.053) TCGA-GD-A2C5-01 1 115260733 115260733 C T CSDE1 3'UTR 0.53 TCGA-GD-A2C5-01 1 11740482 11740482 G A MAD2L2 Silent p.L29L 0.25 TCGA-GD-A2C5-01 1 145561860 145561860 G A ANKRD35 Silent p.P516P 0.21 TCGA-GD-A2C5-01 1 150482400 150482400 C T ECM1 Nonsense_Mutation p.Q103* 0.12 TCGA-GD-A2C5-01 1 154544295 154544295 G A CHRNB2 Silent p.A332A 0.11 TCGA-GD-A2C5-01 1 156784028 156784028 C T SH2D2A Missense_Mutation p.E133K 0.16 deleterious(0) probably_damaging(0.991) TCGA-GD-A2C5-01 1 158261130 158261130 T A CD1C Missense_Mutation p.F90I 0.16 tolerated(0.22) benign(0) TCGA-GD-A2C5-01 1 158589083 158589083 G C SPTA1 Silent p.V2153V 0.03 TCGA-GD-A2C5-01 1 158725151 158725151 C T OR6K6 Silent p.L182L 0.14 TCGA-GD-A2C5-01 1 172628518 172628518 G A FASLG Silent p.P59P 0.66 TCGA-GD-A2C5-01 1 201981484 201981494 CTGATGAGCTC - ELF3 Frame_Shift_Del p.S133* 0.54 TCGA-GD-A2C5-01 1 201982087 201982087 C G ELF3 Missense_Mutation p.S204C 0.19 deleterious(0.04) possibly_damaging(0.759) TCGA-GD-A2C5-01 1 201982405 201982405 G C ELF3 Missense_Mutation p.E262Q 0.22 deleterious(0.03) possibly_damaging(0.811) TCGA-GD-A2C5-01 1 202880190 202880190 C G KLHL12 Missense_Mutation p.D237H 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-GD-A2C5-01 1 202880307 202880307 C G KLHL12 Missense_Mutation p.E198Q 0.40 tolerated(0.16) benign(0.037) TCGA-GD-A2C5-01 1 204401357 204401357 C A PIK3C2B Nonsense_Mutation p.E1376* 0.43 TCGA-GD-A2C5-01 1 204956661 204956661 T C NFASC Silent p.Y862Y 0.13 TCGA-GD-A2C5-01 1 223175804 223175804 A G DISP1 Silent p.G355G 0.04 TCGA-GD-A2C5-01 1 223395510 223395510 G A SUSD4 3'UTR 0.16 TCGA-GD-A2C5-01 1 225977052 225977053 AA T SRP9 Frame_Shift_Del p.E84Dfs*15 0.29 TCGA-GD-A2C5-01 1 23408824 23408824 A G KDM1A Missense_Mutation p.I804V 0.27 tolerated(1) benign(0.007) TCGA-GD-A2C5-01 1 24419481 24419481 G A MYOM3 Missense_Mutation p.S349L 0.24 deleterious(0) benign(0.033) TCGA-GD-A2C5-01 1 27097694 27097694 C T ARID1A Nonsense_Mutation p.Q1095* 0.14 TCGA-GD-A2C5-01 1 35917362 35917362 C T KIAA0319L Silent p.V643V 0.39 TCGA-GD-A2C5-01 1 44087680 44087680 G A PTPRF 3'UTR 0.25 TCGA-GD-A2C5-01 1 44877676 44877676 A G RNF220 5'UTR 0.40 TCGA-GD-A2C5-01 1 55072835 55072835 G A ACOT11 Missense_Mutation p.E467K 0.22 tolerated(0.13) benign(0.074) TCGA-GD-A2C5-01 1 68697918 68697918 A T WLS Missense_Mutation p.L22H 0.19 deleterious(0) probably_damaging(0.996) TCGA-GD-A2C5-01 20 18474623 18474623 G A RBBP9 Missense_Mutation p.S76F 0.15 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 20 34206013 34206013 C G SPAG4 Missense_Mutation p.F181L 0.19 tolerated(1) benign(0) TCGA-GD-A2C5-01 20 52645063 52645063 G A BCAS1 Silent p.F197F 0.14 TCGA-GD-A2C5-01 20 52645101 52645101 G A BCAS1 Missense_Mutation p.P185S 0.13 tolerated(0.11) possibly_damaging(0.878) TCGA-GD-A2C5-01 20 5937805 5937805 G C MCM8 Missense_Mutation p.E174Q 0.13 tolerated(0.14) benign(0.339) TCGA-GD-A2C5-01 20 5937835 5937835 G A MCM8 Missense_Mutation p.D184N 0.15 tolerated(0.38) benign(0.001) TCGA-GD-A2C5-01 20 5937839 5937839 G A MCM8 Missense_Mutation p.G185E 0.13 tolerated(0.67) benign(0.002) TCGA-GD-A2C5-01 20 61537316 61537316 G A DIDO1 Missense_Mutation p.S504L 0.05 probably_damaging(0.997) TCGA-GD-A2C5-01 21 16337172 16337172 C T NRIP1 Silent p.T1114T 0.38 TCGA-GD-A2C5-01 21 27137078 27137078 G C GABPA Missense_Mutation p.E372D 0.15 deleterious(0) probably_damaging(0.977) TCGA-GD-A2C5-01 21 31874326 31874326 C T KRTAP19-5 Missense_Mutation p.G28E 0.37 tolerated_low_confidence(0.05) unknown(0) TCGA-GD-A2C5-01 21 44592274 44592274 G T CRYAA Missense_Mutation p.D136Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-GD-A2C5-01 21 47556358 47556358 G A FTCD 3'UTR 0.11 TCGA-GD-A2C5-01 22 19951777 19951777 C G COMT Silent p.L190L 0.30 TCGA-GD-A2C5-01 22 26761376 26761376 G T SEZ6L Nonsense_Mutation p.E880* 0.44 TCGA-GD-A2C5-01 22 37898637 37898637 G A CARD10 Missense_Mutation p.R587W 0.23 tolerated(0.14) benign(0.004) TCGA-GD-A2C5-01 22 38155170 38155170 C T TRIOBP Missense_Mutation p.L2075F 0.15 deleterious(0) probably_damaging(0.997) TCGA-GD-A2C5-01 22 47507475 47507475 A C TBC1D22A Missense_Mutation p.E467D 0.22 tolerated(0.22) benign(0.002) TCGA-GD-A2C5-01 2 102493575 102493575 C T MAP4K4 Missense_Mutation p.L973F 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-GD-A2C5-01 2 1079260 1079260 C G SNTG2 Missense_Mutation p.I43M 0.18 tolerated(0.19) possibly_damaging(0.577) TCGA-GD-A2C5-01 2 109384816 109384816 C G RANBP2 Missense_Mutation p.I2607M 0.23 tolerated(0.27) possibly_damaging(0.465) TCGA-GD-A2C5-01 2 120413990 120413990 G A PCDP1 Missense_Mutation p.E823K 0.18 tolerated(0.45) benign(0.146) TCGA-GD-A2C5-01 2 128015226 128015226 C T ERCC3 Silent p.R765R 0.18 TCGA-GD-A2C5-01 2 128399744 128399744 C A LIMS2 Silent p.L204L 0.39 TCGA-GD-A2C5-01 2 128408752 128408752 C A GPR17 Missense_Mutation p.A176E 0.39 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 2 128464101 128464101 C G WDR33 Missense_Mutation p.Q1269H 0.16 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-GD-A2C5-01 2 130832843 130832843 G A POTEF Silent p.I734I 0.20 TCGA-GD-A2C5-01 2 140990860 140990860 T C LRP1B Silent p.L4565L 0.66 TCGA-GD-A2C5-01 2 152510589 152510589 C T NEB Missense_Mutation p.E2278K 0.21 benign(0.051) TCGA-GD-A2C5-01 2 153515522 153515522 C G PRPF40A Missense_Mutation p.E836D 0.25 tolerated(0.34) unknown(0) TCGA-GD-A2C5-01 2 166003408 166003408 C T SCN3A Silent p.K504K 0.19 TCGA-GD-A2C5-01 2 166019259 166019259 C G SCN3A Silent p.L258L 0.22 TCGA-GD-A2C5-01 2 166627186 166627186 T A GALNT3 Nonsense_Mutation p.K9* 0.42 TCGA-GD-A2C5-01 2 167151173 167151173 C T SCN9A Splice_Site p.X301_splice 0.15 TCGA-GD-A2C5-01 2 174231089 174231089 C T CDCA7 Nonsense_Mutation p.R372* 0.32 TCGA-GD-A2C5-01 2 179451491 179451491 G A TTN Silent p.T21379T 0.42 TCGA-GD-A2C5-01 2 179473525 179473525 T C TTN Missense_Mutation p.T17405A 0.19 TCGA-GD-A2C5-01 2 182360109 182360109 G C ITGA4 Missense_Mutation p.G451R 0.34 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 2 201726128 201726128 C T CLK1 Missense_Mutation p.E117K 0.21 tolerated(0.1) possibly_damaging(0.611) TCGA-GD-A2C5-01 2 203650663 203650663 C G ICA1L Missense_Mutation p.Q437H 0.33 deleterious(0.04) benign(0.004) TCGA-GD-A2C5-01 2 203765749 203765749 G A WDR12 Missense_Mutation p.S77L 0.13 deleterious(0.03) benign(0.005) TCGA-GD-A2C5-01 2 206480357 206480357 G A PARD3B Silent p.P1084P 0.22 TCGA-GD-A2C5-01 2 207041526 207041526 C A GPR1 Missense_Mutation p.R149L 0.28 deleterious(0) probably_damaging(0.983) TCGA-GD-A2C5-01 2 21225673 21225673 T C APOB Silent p.K4207K 0.15 TCGA-GD-A2C5-01 2 220367145 220367145 G A GMPPA Silent p.E157E 0.29 TCGA-GD-A2C5-01 2 228973649 228973649 G A SPHKAP Missense_Mutation p.R49C 0.41 tolerated(0.67) benign(0.008) TCGA-GD-A2C5-01 2 234358738 234358738 G A DGKD Missense_Mutation p.E667K 0.14 tolerated(0.73) benign(0.002) TCGA-GD-A2C5-01 2 236617866 236617866 C T AGAP1 Silent p.V69V 0.22 TCGA-GD-A2C5-01 2 237150037 237150037 C T ASB18 Missense_Mutation p.D72N 0.49 tolerated(0.39) benign(0.007) TCGA-GD-A2C5-01 2 242128095 242128095 G A ANO7 Silent p.V23V 0.44 TCGA-GD-A2C5-01 2 25982476 25982476 C G ASXL2 Missense_Mutation p.E272Q 0.37 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 2 27888132 27888132 G T SLC4A1AP Missense_Mutation p.D331Y 0.17 deleterious(0) possibly_damaging(0.497) TCGA-GD-A2C5-01 2 29117734 29117735 - CCT WDR43 In_Frame_Ins p.L58dup 0.58 TCGA-GD-A2C5-01 2 37487476 37487476 C T PRKD3 Missense_Mutation p.E646K 0.20 deleterious(0) probably_damaging(0.938) TCGA-GD-A2C5-01 2 37487528 37487528 C G PRKD3 Splice_Site p.X629_splice 0.15 TCGA-GD-A2C5-01 2 54167130 54167130 C T PSME4 Missense_Mutation p.E170K 0.50 deleterious(0.01) benign(0.036) TCGA-GD-A2C5-01 2 54856191 54856191 C T SPTBN1 Silent p.L640L 0.21 TCGA-GD-A2C5-01 2 96957605 96957605 C T SNRNP200 Missense_Mutation p.G732R 0.19 deleterious(0) probably_damaging(0.954) TCGA-GD-A2C5-01 3 101378715 101378715 C T ZBTB11 Missense_Mutation p.C653Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-GD-A2C5-01 3 112709949 112709949 G A GTPBP8 Missense_Mutation p.E35K 0.28 tolerated(0.21) benign(0.077) TCGA-GD-A2C5-01 3 121491405 121491405 C G IQCB1 Missense_Mutation p.M522I 0.21 tolerated(0.28) benign(0.002) TCGA-GD-A2C5-01 3 124646788 124646788 C G MUC13 Silent p.A34A 0.19 TCGA-GD-A2C5-01 3 126290711 126290711 G C TXNRD3NB 3'UTR 0.46 TCGA-GD-A2C5-01 3 130289928 130289928 G A COL6A6 Missense_Mutation p.E890K 0.15 tolerated(1) benign(0.058) TCGA-GD-A2C5-01 3 139258323 139258323 C T RBP1 Missense_Mutation p.E80K 0.37 deleterious(0) probably_damaging(0.98) TCGA-GD-A2C5-01 3 180349347 180349347 C T CCDC39 Silent p.E636E 0.57 TCGA-GD-A2C5-01 3 182788887 182788887 C G MCCC1 Missense_Mutation p.E221Q 0.16 tolerated(0.16) possibly_damaging(0.826) TCGA-GD-A2C5-01 3 182789047 182789047 C G MCCC1 Missense_Mutation p.R197T 0.28 tolerated(0.1) benign(0.033) TCGA-GD-A2C5-01 3 182790262 182790262 C G MCCC1 Missense_Mutation p.G128A 0.16 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 3 186336322 186336322 C G AHSG Intron 0.20 TCGA-GD-A2C5-01 3 186337720 186337720 C G AHSG Missense_Mutation p.F250L 0.26 deleterious(0) probably_damaging(0.979) TCGA-GD-A2C5-01 3 189597922 189597922 C T TP63 Intron 0.19 TCGA-GD-A2C5-01 3 195594701 195594701 G C TNK2 Nonsense_Mutation p.S886* 0.14 TCGA-GD-A2C5-01 3 32769246 32769246 C T CNOT10 Missense_Mutation p.H427Y 0.17 tolerated(0.12) benign(0.331) TCGA-GD-A2C5-01 3 37092133 37092133 G C MLH1 Missense_Mutation p.E754Q 0.20 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 3 40433404 40433404 G A ENTPD3 Intron 0.30 TCGA-GD-A2C5-01 3 48663648 48663648 C T SLC26A6 Intron 0.14 TCGA-GD-A2C5-01 3 48697790 48697790 C T CELSR3 Missense_Mutation p.E760K 0.24 tolerated(0.11) probably_damaging(0.998) TCGA-GD-A2C5-01 3 51751819 51751819 C T GRM2 Missense_Mutation p.S844F 0.21 tolerated(0.09) possibly_damaging(0.707) TCGA-GD-A2C5-01 3 58149068 58149068 C G FLNB Intron 0.22 TCGA-GD-A2C5-01 3 9517349 9517349 C A SETD5 Missense_Mutation p.S1301R 0.23 deleterious(0) probably_damaging(0.996) TCGA-GD-A2C5-01 3 96706267 96706267 C T EPHA6 Missense_Mutation p.R182C 0.13 deleterious(0) probably_damaging(0.927) TCGA-GD-A2C5-01 3 99567199 99567199 G A FILIP1L Silent p.V1107V 0.19 TCGA-GD-A2C5-01 4 106156981 106156981 G A TET2 Missense_Mutation p.E628K 0.15 deleterious_low_confidence(0.02) benign(0.424) TCGA-GD-A2C5-01 4 123277009 123277009 G C KIAA1109 Missense_Mutation p.K4788N 0.38 possibly_damaging(0.9) TCGA-GD-A2C5-01 4 159547979 159547979 G A RXFP1 Missense_Mutation p.E255K 0.38 deleterious(0) probably_damaging(0.967) TCGA-GD-A2C5-01 4 3441290 3441290 C T RGS12 Missense_Mutation p.A1408V 0.20 tolerated_low_confidence(1) benign(0.001) TCGA-GD-A2C5-01 4 37592524 37592524 G A C4orf19 Missense_Mutation p.G283R 0.43 tolerated(0.9) unknown(0) TCGA-GD-A2C5-01 4 56768625 56768625 G A EXOC1 Missense_Mutation p.G818E 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-GD-A2C5-01 4 57860643 57860643 C T POLR2B Missense_Mutation p.S106L 0.25 tolerated(0.2) benign(0.035) TCGA-GD-A2C5-01 4 62845433 62845433 C G LPHN3 Missense_Mutation p.I918M 0.07 deleterious(0) possibly_damaging(0.781) TCGA-GD-A2C5-01 5 131925368 131925368 G C RAD50 Missense_Mutation p.E431Q 0.23 tolerated(0.07) benign(0.06) TCGA-GD-A2C5-01 5 131925439 131925439 G A RAD50 Silent p.Q454Q 0.39 TCGA-GD-A2C5-01 5 131925448 131925448 G A RAD50 Silent p.L457L 0.33 TCGA-GD-A2C5-01 5 131925479 131925479 G A RAD50 Missense_Mutation p.E468K 0.36 tolerated(0.08) benign(0.186) TCGA-GD-A2C5-01 5 138386694 138386694 G A SIL1 Nonsense_Mutation p.Q96* 0.37 TCGA-GD-A2C5-01 5 140711698 140711698 G A PCDHGA1 Missense_Mutation p.E483K 0.29 tolerated_low_confidence(0.1) benign(0.081) TCGA-GD-A2C5-01 5 140745310 140745310 C G PCDHGA5 Missense_Mutation p.I471M 0.22 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-GD-A2C5-01 5 140772943 140772943 G C PCDHGA8 Missense_Mutation p.G188A 0.27 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-GD-A2C5-01 5 33683979 33683979 G A ADAMTS12 Silent p.L272L 0.28 TCGA-GD-A2C5-01 5 5489267 5489267 C T KIAA0947 Missense_Mutation p.P2209S 0.14 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 5 94248593 94248593 C T MCTP1 Missense_Mutation p.R480K 0.59 tolerated(0.51) benign(0.145) TCGA-GD-A2C5-01 5 98115321 98115321 A G RGMB Silent p.K99K 0.53 TCGA-GD-A2C5-01 6 106968294 106968294 C G AIM1 Missense_Mutation p.Q663E 0.18 tolerated(0.15) benign(0.058) TCGA-GD-A2C5-01 6 117241560 117241560 C G RFX6 Missense_Mutation p.Q424E 0.17 tolerated(0.07) benign(0.264) TCGA-GD-A2C5-01 6 118845073 118845073 C G CEP85L Missense_Mutation p.G347A 0.19 tolerated(0.2) benign(0.176) TCGA-GD-A2C5-01 6 13620657 13620657 C T NOL7 Missense_Mutation p.L214F 0.23 tolerated(0.07) probably_damaging(1) TCGA-GD-A2C5-01 6 136667001 136667001 C T MAP7 Silent p.Q766Q 0.20 TCGA-GD-A2C5-01 6 153316427 153316427 C A MTRF1L Nonsense_Mutation p.E123* 0.22 TCGA-GD-A2C5-01 6 160431725 160431725 C A IGF2R Missense_Mutation p.P141T 0.22 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 6 161527688 161527688 C G MAP3K4 Missense_Mutation p.H1333Q 0.07 tolerated(0.21) benign(0.195) TCGA-GD-A2C5-01 6 17426839 17426839 A G CAP2 Missense_Mutation p.E47G 0.36 tolerated(0.08) probably_damaging(0.909) TCGA-GD-A2C5-01 6 25972225 25972225 G A TRIM38 Silent p.L212L 0.35 TCGA-GD-A2C5-01 6 26031885 26031885 C G HIST1H3B Missense_Mutation p.R135T 0.21 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-GD-A2C5-01 6 26123851 26123851 C T HIST1H2BC Silent p.E94E 0.14 TCGA-GD-A2C5-01 6 29576387 29576387 G A GABBR1 Silent p.F661F 0.17 TCGA-GD-A2C5-01 6 31766264 31766264 G A LSM2 Missense_Mutation p.S31F 0.32 deleterious(0) possibly_damaging(0.886) TCGA-GD-A2C5-01 6 31847893 31847893 C G EHMT2 Missense_Mutation p.E1201Q 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-GD-A2C5-01 6 31867740 31867740 T A ZBTB12 Missense_Mutation p.E448V 0.41 deleterious(0.01) benign(0.403) TCGA-GD-A2C5-01 6 32261160 32261160 C G C6orf10 Missense_Mutation p.K430N 0.15 tolerated(0.25) benign(0.007) TCGA-GD-A2C5-01 6 33283569 33283569 G A ZBTB22 Silent p.V375V 0.17 TCGA-GD-A2C5-01 6 36298448 36298448 G C C6orf222 Missense_Mutation p.P7R 0.13 tolerated(0.09) benign(0.105) TCGA-GD-A2C5-01 6 38840895 38840895 C G DNAH8 Missense_Mutation p.S2267C 0.20 probably_damaging(0.987) TCGA-GD-A2C5-01 6 4131046 4131046 G A ECI2 Silent p.N89N 0.22 TCGA-GD-A2C5-01 6 42931454 42931454 C G GNMT 3'UTR 0.29 TCGA-GD-A2C5-01 6 44254253 44254253 C T TCTE1 Silent p.K98K 0.15 TCGA-GD-A2C5-01 6 7583321 7583321 C A DSP Silent p.L1942L 0.35 TCGA-GD-A2C5-01 6 84303326 84303326 G C SNAP91 Missense_Mutation p.P523A 0.36 tolerated(0.47) possibly_damaging(0.539) TCGA-GD-A2C5-01 7 107674733 107674733 G C LAMB4 Missense_Mutation p.Q1580E 0.34 tolerated(0.83) benign(0.001) TCGA-GD-A2C5-01 7 124503594 124503594 G A POT1 Missense_Mutation p.S119L 0.11 deleterious(0.03) possibly_damaging(0.515) TCGA-GD-A2C5-01 7 135262738 135262738 C T NUP205 Silent p.I281I 0.16 TCGA-GD-A2C5-01 7 14188727 14188727 T G DGKB 3'UTR 0.15 TCGA-GD-A2C5-01 7 143701978 143701978 G T OR6B1 Nonsense_Mutation p.E297* 0.20 TCGA-GD-A2C5-01 7 150554983 150554983 G A AOC1 Missense_Mutation p.M475I 0.34 tolerated(0.6) benign(0.054) TCGA-GD-A2C5-01 7 150774491 150774491 G A FASTK Intron 0.27 TCGA-GD-A2C5-01 7 21920409 21920409 G A DNAH11 Silent p.L4102L 0.25 TCGA-GD-A2C5-01 7 22533267 22533267 C T STEAP1B Silent p.L91L 0.13 TCGA-GD-A2C5-01 7 23349004 23349004 G C MALSU1 Missense_Mutation p.E183Q 0.16 deleterious(0.02) possibly_damaging(0.612) TCGA-GD-A2C5-01 7 40134627 40134627 C G CDK13 3'UTR 0.12 TCGA-GD-A2C5-01 7 4917471 4917471 G T RADIL Nonsense_Mutation p.Y100* 0.13 TCGA-GD-A2C5-01 7 72657919 72657919 C T GTF2IRD2P1 RNA 0.17 TCGA-GD-A2C5-01 7 94919414 94919414 G A PPP1R9A Missense_Mutation p.M1308I 0.17 tolerated(0.1) benign(0.003) TCGA-GD-A2C5-01 8 105463544 105463544 C T DPYS Missense_Mutation p.R118Q 0.12 deleterious(0.04) possibly_damaging(0.731) TCGA-GD-A2C5-01 8 145737627 145737627 C T RECQL4 Missense_Mutation p.E1046K 0.23 tolerated(0.06) possibly_damaging(0.454) TCGA-GD-A2C5-01 8 145770988 145770988 C G ARHGAP39 Missense_Mutation p.W722C 0.26 deleterious(0) probably_damaging(0.998) TCGA-GD-A2C5-01 8 27168708 27168708 G C TRIM35 Missense_Mutation p.F15L 0.42 tolerated(0.42) benign(0.01) TCGA-GD-A2C5-01 8 71508503 71508503 C G TRAM1 Silent p.L160L 0.19 TCGA-GD-A2C5-01 8 73848919 73848919 C T KCNB2 Silent p.A443A 0.18 TCGA-GD-A2C5-01 8 82373707 82373707 C G FABP9 Missense_Mutation p.E18Q 0.16 deleterious(0.02) possibly_damaging(0.54) TCGA-GD-A2C5-01 8 94767171 94767171 C T TMEM67 Missense_Mutation p.A10V 0.17 tolerated_low_confidence(0.17) benign(0.001) TCGA-GD-A2C5-01 9 101980827 101980827 C T ALG2 Missense_Mutation p.E214K 0.26 tolerated(0.54) benign(0.004) TCGA-GD-A2C5-01 9 117093120 117093120 G A ORM2 Silent p.E102E 0.62 TCGA-GD-A2C5-01 9 13176368 13176368 G C MPDZ Missense_Mutation p.L900V 0.12 tolerated(0.53) benign(0.003) TCGA-GD-A2C5-01 9 135778175 135778175 C G TSC1 Splice_Site p.X737_splice 0.64 TCGA-GD-A2C5-01 9 139358996 139358996 G A SEC16A Missense_Mutation p.S1441F 0.26 deleterious(0) probably_damaging(0.983) TCGA-GD-A2C5-01 9 139739870 139739870 C T C9orf172 Missense_Mutation p.P335L 0.21 tolerated(1) possibly_damaging(0.491) TCGA-GD-A2C5-01 9 139741083 139741083 C G C9orf172 Missense_Mutation p.I739M 0.35 deleterious(0.04) possibly_damaging(0.692) TCGA-GD-A2C5-01 9 37126696 37126696 C T ZCCHC7 Missense_Mutation p.L123F 0.11 tolerated(0.07) benign(0.02) TCGA-GD-A2C5-01 9 6592946 6592946 C G GLDC Missense_Mutation p.D436H 0.16 deleterious(0) probably_damaging(1) TCGA-GD-A2C5-01 9 73230868 73230868 C G TRPM3 Missense_Mutation p.E816Q 0.21 tolerated(0.41) benign(0.234) TCGA-GD-A2C5-01 9 91926154 91926154 C G CKS2 5'UTR 0.54 TCGA-GD-A2C5-01 X 106359927 106359927 C T RBM41 Silent p.L26L 0.32 TCGA-GD-A2C5-01 X 118374364 118374364 G A PGRMC1 Missense_Mutation p.D141N 0.22 deleterious(0) probably_damaging(0.998) TCGA-GD-A2C5-01 X 153626729 153626729 C T RPL10 5'UTR 0.27 TCGA-GD-A2C5-01 X 18283889 18283889 G A SCML2 Missense_Mutation p.S255F 0.45 deleterious(0.01) possibly_damaging(0.541) TCGA-GD-A2C5-01 X 38147258 38147258 C T RPGR Missense_Mutation p.A537T 0.29 benign(0.135) TCGA-GD-A2C5-01 X 44966654 44966654 G A KDM6A Splice_Site p.X1293_splice 0.49 TCGA-GD-A2C5-01 X 69353901 69353901 C T IGBP1 Missense_Mutation p.S35F 0.25 deleterious(0) probably_damaging(0.93) TCGA-GD-A2C5-01 X 73069448 73069448 G A XIST RNA 0.47 TCGA-GD-A2C5-01 X 73071333 73071333 T C XIST RNA 0.15 TCGA-GD-A3OP-01 10 117040926 117040926 G T ATRNL1 Missense_Mutation p.S721I 0.15 deleterious(0) possibly_damaging(0.794) TCGA-GD-A3OP-01 10 11994119 11994119 C T UPF2 Missense_Mutation p.E994K 0.09 tolerated(0.16) benign(0.017) TCGA-GD-A3OP-01 10 13225054 13225054 G A MCM10 Missense_Mutation p.G352E 0.11 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 10 13225055 13225055 G A MCM10 Silent p.G352G 0.10 TCGA-GD-A3OP-01 10 15138479 15138479 C G C10orf111 Missense_Mutation p.M115I 0.05 tolerated_low_confidence(0.66) probably_damaging(0.982) TCGA-GD-A3OP-01 10 22830755 22830755 G C PIP4K2A Silent p.V338V 0.07 TCGA-GD-A3OP-01 10 25464659 25464659 G C GPR158 Missense_Mutation p.E104Q 0.07 tolerated(0.06) possibly_damaging(0.869) TCGA-GD-A3OP-01 10 26800720 26800720 G A APBB1IP Silent p.L192L 0.05 TCGA-GD-A3OP-01 10 27423784 27423784 G A YME1L1 Nonsense_Mutation p.Q280* 0.06 TCGA-GD-A3OP-01 10 35317752 35317752 T A CUL2 Nonsense_Mutation p.K554* 0.06 TCGA-GD-A3OP-01 10 43293936 43293936 G C BMS1 Missense_Mutation p.E704Q 0.08 tolerated(0.05) benign(0.216) TCGA-GD-A3OP-01 10 5808246 5808246 G A GDI2 Silent p.I383I 0.04 TCGA-GD-A3OP-01 10 76982062 76982062 C T VDAC2 Missense_Mutation p.L228F 0.08 deleterious(0.03) benign(0.092) TCGA-GD-A3OP-01 11 113130955 113130955 G A NCAM1 Missense_Mutation p.E730K 0.09 deleterious(0) probably_damaging(0.998) TCGA-GD-A3OP-01 11 113660171 113660171 C T ATF4P4 RNA 0.12 TCGA-GD-A3OP-01 11 1154305 1154305 G A MUC5AC Missense_Mutation p.G51R 0.16 deleterious(0.02) benign(0.08) TCGA-GD-A3OP-01 11 119244114 119244114 C T USP2 Missense_Mutation p.G26D 0.12 tolerated_low_confidence(0.26) benign(0.11) TCGA-GD-A3OP-01 11 120312861 120312861 A G ARHGEF12 Missense_Mutation p.T418A 0.06 tolerated(0.3) possibly_damaging(0.45) TCGA-GD-A3OP-01 11 121414362 121414362 C T SORL1 Silent p.F597F 0.04 TCGA-GD-A3OP-01 11 121414368 121414368 C G SORL1 Missense_Mutation p.I599M 0.03 tolerated(0.26) possibly_damaging(0.824) TCGA-GD-A3OP-01 11 126081625 126081625 C T FAM118B 5'UTR 0.33 TCGA-GD-A3OP-01 11 1263825 1263825 G C MUC5B Missense_Mutation p.W1905C 0.07 unknown(0) TCGA-GD-A3OP-01 11 20113769 20113769 G T NAV2 Silent p.L1949L 0.06 TCGA-GD-A3OP-01 11 20113776 20113776 G A NAV2 Missense_Mutation p.E1952K 0.06 deleterious(0) probably_damaging(0.993) TCGA-GD-A3OP-01 11 2610039 2610039 G C KCNQ1 Missense_Mutation p.E450Q 0.13 tolerated(0.13) benign(0.091) TCGA-GD-A3OP-01 11 3069173 3069173 C T CARS Silent p.L28L 0.15 TCGA-GD-A3OP-01 11 31329201 31329201 G A DCDC1 Missense_Mutation p.P140L 0.12 deleterious(0) possibly_damaging(0.871) TCGA-GD-A3OP-01 11 44948255 44948255 G A TSPAN18 Missense_Mutation p.E216K 0.07 tolerated(0.64) probably_damaging(0.975) TCGA-GD-A3OP-01 11 56020432 56020432 T C OR5T3 Silent p.L253L 0.07 TCGA-GD-A3OP-01 11 57076793 57076793 C G TNKS1BP1 Missense_Mutation p.R1131T 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-GD-A3OP-01 11 57259332 57259332 G A SLC43A1 Missense_Mutation p.S292F 0.09 deleterious(0) possibly_damaging(0.878) TCGA-GD-A3OP-01 11 57799186 57799186 C T OR6Q1 Silent p.L254L 0.13 TCGA-GD-A3OP-01 11 58893123 58893123 C G FAM111B Missense_Mutation p.T518S 0.08 tolerated(0.54) benign(0.017) TCGA-GD-A3OP-01 11 6023979 6023979 G C OR56A4 Missense_Mutation p.P134A 0.10 deleterious(0) probably_damaging(0.994) TCGA-GD-A3OP-01 11 64595223 64595223 C T CDC42BPG Missense_Mutation p.E1334K 0.07 deleterious(0) probably_damaging(0.977) TCGA-GD-A3OP-01 11 65318916 65318916 C T LTBP3 Silent p.Q526Q 0.08 TCGA-GD-A3OP-01 11 66063113 66063113 G A TMEM151A Missense_Mutation p.G466S 0.15 tolerated_low_confidence(0.32) benign(0.005) TCGA-GD-A3OP-01 11 66313210 66313210 G A ZDHHC24 Silent p.L89L 0.15 TCGA-GD-A3OP-01 11 74545750 74545750 A G RNF169 Missense_Mutation p.Q291R 0.05 tolerated(0.46) possibly_damaging(0.731) TCGA-GD-A3OP-01 11 74873787 74873787 C T SLCO2B1 Missense_Mutation p.P35L 0.07 tolerated(0.05) benign(0.01) TCGA-GD-A3OP-01 11 85627263 85627265 AGA - CCDC83 In_Frame_Del p.K388del 0.15 TCGA-GD-A3OP-01 11 89531432 89531432 C T TRIM49 Missense_Mutation p.V409I 0.09 tolerated(0.12) benign(0.116) TCGA-GD-A3OP-01 11 9851008 9851008 C T SBF2 Missense_Mutation p.E1230K 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-GD-A3OP-01 12 106500216 106500216 G C NUAK1 Missense_Mutation p.L110V 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-GD-A3OP-01 12 110641690 110641690 G C IFT81 Missense_Mutation p.E527Q 0.20 tolerated(0.07) benign(0.076) TCGA-GD-A3OP-01 12 11286349 11286349 C A TAS2R30 Missense_Mutation p.K165N 0.07 tolerated(0.1) benign(0.222) TCGA-GD-A3OP-01 12 1895205 1895205 C T ADIPOR2 Silent p.I376I 0.05 TCGA-GD-A3OP-01 12 21036424 21036424 T A SLCO1B3 Missense_Mutation p.C524S 0.06 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 12 3692332 3692332 A G PRMT8 Missense_Mutation p.I313V 0.17 tolerated(0.51) benign(0.002) TCGA-GD-A3OP-01 12 40631899 40631899 G A LRRK2 Missense_Mutation p.E189K 0.11 deleterious(0.02) benign(0.293) TCGA-GD-A3OP-01 12 46230554 46230554 C T ARID2 Missense_Mutation p.S268F 0.08 deleterious(0.01) possibly_damaging(0.462) TCGA-GD-A3OP-01 12 46298835 46298835 G C ARID2 Missense_Mutation p.E1828Q 0.07 deleterious_low_confidence(0.02) benign(0.328) TCGA-GD-A3OP-01 12 49054188 49054188 C T KANSL2 Silent p.E396E 0.12 TCGA-GD-A3OP-01 12 49445352 49445352 G T KMT2D Nonsense_Mutation p.S705* 0.09 TCGA-GD-A3OP-01 12 49445757 49445757 G C KMT2D Missense_Mutation p.S570C 0.07 unknown(0) TCGA-GD-A3OP-01 12 50829320 50829320 C T LARP4 Nonsense_Mutation p.Q150* 0.10 TCGA-GD-A3OP-01 12 51500367 51500367 G A TFCP2 Silent p.V286V 0.08 TCGA-GD-A3OP-01 12 52984645 52984645 G C KRT72 Nonsense_Mutation p.S355* 0.11 TCGA-GD-A3OP-01 12 53605514 53605514 G C RARG Missense_Mutation p.S437R 0.12 deleterious_low_confidence(0.03) benign(0.096) TCGA-GD-A3OP-01 12 53994749 53994749 C A ATF7 Silent p.P12P 0.12 TCGA-GD-A3OP-01 12 57398642 57398642 G C ZBTB39 Silent p.L20L 0.04 TCGA-GD-A3OP-01 12 69121157 69121157 G C NUP107 Missense_Mutation p.K574N 0.04 deleterious(0.02) probably_damaging(0.948) TCGA-GD-A3OP-01 12 71960693 71960693 G A LGR5 Splice_Site p.X357_splice 0.06 TCGA-GD-A3OP-01 12 7290563 7290563 C G CLSTN3 Missense_Mutation p.S408C 0.12 deleterious(0) probably_damaging(0.962) TCGA-GD-A3OP-01 12 93226360 93226360 C G EEA1 Missense_Mutation p.E394D 0.04 deleterious(0.01) possibly_damaging(0.644) TCGA-GD-A3OP-01 12 95566467 95566467 G A FGD6 Missense_Mutation p.S832F 0.06 deleterious(0.01) probably_damaging(0.954) TCGA-GD-A3OP-01 13 100637333 100637333 G A ZIC2 Silent p.T403T 0.10 TCGA-GD-A3OP-01 13 107147270 107147270 C A EFNB2 Missense_Mutation p.G191V 0.05 tolerated(0.4) benign(0.004) TCGA-GD-A3OP-01 13 111296814 111296814 C T CARS2 Missense_Mutation p.R445K 0.07 deleterious(0.01) possibly_damaging(0.566) TCGA-GD-A3OP-01 13 21442787 21442787 G C XPO4 Missense_Mutation p.F41L 0.03 tolerated(0.24) possibly_damaging(0.471) TCGA-GD-A3OP-01 13 23905453 23905453 C T SACS Missense_Mutation p.A4188T 0.10 benign(0.283) TCGA-GD-A3OP-01 13 25008866 25008866 C T PARP4 Silent p.L1471L 0.29 TCGA-GD-A3OP-01 13 32313816 32313816 C T RXFP2 Missense_Mutation p.H23Y 0.05 tolerated_low_confidence(1) benign(0.001) TCGA-GD-A3OP-01 13 46708313 46708313 C T LCP1 Silent p.V525V 0.10 TCGA-GD-A3OP-01 13 72053440 72053440 C T DACH1 Silent p.L579L 0.05 TCGA-GD-A3OP-01 13 96274734 96274734 G A DZIP1 Nonsense_Mutation p.Q325* 0.09 TCGA-GD-A3OP-01 13 97999162 97999162 A G MBNL2 Silent p.V215V 0.11 TCGA-GD-A3OP-01 14 103574805 103574805 G T EXOC3L4 Missense_Mutation p.D643Y 0.06 deleterious(0.03) probably_damaging(0.968) TCGA-GD-A3OP-01 14 21960463 21960463 G A TOX4 Silent p.K273K 0.09 TCGA-GD-A3OP-01 14 37969203 37969203 G C MIPOL1 Missense_Mutation p.E374D 0.04 tolerated(0.25) probably_damaging(0.962) TCGA-GD-A3OP-01 14 53187697 53187697 T G PSMC6 Missense_Mutation p.I313R 0.05 deleterious(0) probably_damaging(0.991) TCGA-GD-A3OP-01 14 55429799 55429799 G C WDHD1 Missense_Mutation p.S801C 0.07 deleterious(0.05) benign(0.053) TCGA-GD-A3OP-01 14 56122763 56122763 G A KTN1 Silent p.L935L 0.15 TCGA-GD-A3OP-01 14 60213112 60213112 G C RTN1 Missense_Mutation p.S110C 0.09 deleterious(0) probably_damaging(0.982) TCGA-GD-A3OP-01 14 75590902 75590902 C T NEK9 Missense_Mutation p.E82K 0.08 tolerated(0.06) probably_damaging(0.956) TCGA-GD-A3OP-01 14 94914814 94914814 G T SERPINA11 Missense_Mutation p.L100M 0.10 deleterious(0.01) probably_damaging(1) TCGA-GD-A3OP-01 14 97003351 97003351 G A PAPOLA Missense_Mutation p.E357K 0.08 deleterious(0.03) benign(0.015) TCGA-GD-A3OP-01 14 99183486 99183486 G T C14orf177 Nonsense_Mutation p.E85* 0.07 TCGA-GD-A3OP-01 15 28408392 28408392 G A HERC2 Nonsense_Mutation p.Q3532* 0.05 TCGA-GD-A3OP-01 15 40675233 40675233 G A KNSTRN Missense_Mutation p.R66Q 0.06 tolerated_low_confidence(0.67) benign(0.011) TCGA-GD-A3OP-01 15 42821985 42821985 C G SNAP23 Missense_Mutation p.Q180E 0.06 deleterious(0) probably_damaging(0.96) TCGA-GD-A3OP-01 15 44116771 44116771 G A MFAP1 5'UTR 0.07 TCGA-GD-A3OP-01 15 44116780 44116780 G A MFAP1 5'UTR 0.08 TCGA-GD-A3OP-01 15 51772766 51772766 G C DMXL2 Silent p.L2179L 0.08 TCGA-GD-A3OP-01 15 64689913 64689913 G A TRIP4 Missense_Mutation p.D172N 0.06 deleterious(0) probably_damaging(0.948) TCGA-GD-A3OP-01 15 67073574 67073574 G A SMAD6 Missense_Mutation p.D398N 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-GD-A3OP-01 15 70959792 70959792 C G UACA Missense_Mutation p.Q1077H 0.10 deleterious(0.03) possibly_damaging(0.62) TCGA-GD-A3OP-01 15 86814885 86814885 C G AGBL1 Missense_Mutation p.L629V 0.08 deleterious(0.03) possibly_damaging(0.556) TCGA-GD-A3OP-01 15 89403660 89403660 C T ACAN Silent p.H2312H 0.11 TCGA-GD-A3OP-01 15 89442994 89442994 C A MFGE8 Missense_Mutation p.A307S 0.11 deleterious(0.02) probably_damaging(0.91) TCGA-GD-A3OP-01 15 90189215 90189215 C T KIF7 Missense_Mutation p.E611K 0.07 tolerated(0.28) benign(0.007) TCGA-GD-A3OP-01 15 91333991 91333991 G C BLM Missense_Mutation p.R979T 0.07 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 15 91769716 91769716 C T SV2B Missense_Mutation p.R75W 0.13 deleterious(0) possibly_damaging(0.816) TCGA-GD-A3OP-01 16 11137897 11137897 G A CLEC16A Missense_Mutation p.E595K 0.12 tolerated(0.07) possibly_damaging(0.887) TCGA-GD-A3OP-01 16 11824584 11824584 C G TXNDC11 Missense_Mutation p.E206Q 0.04 tolerated(0.06) possibly_damaging(0.868) TCGA-GD-A3OP-01 16 1417786 1417786 C G UNKL Silent p.L550L 0.23 TCGA-GD-A3OP-01 16 16219752 16219752 C T ABCC1 Missense_Mutation p.S1268L 0.09 deleterious(0.01) benign(0.434) TCGA-GD-A3OP-01 16 2546099 2546099 C G RP11-20I23.1 5'UTR 0.13 TCGA-GD-A3OP-01 16 2546157 2546157 C G RP11-20I23.1 Missense_Mutation p.S3C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.716) TCGA-GD-A3OP-01 16 30134420 30134420 G A MAPK3 Silent p.D37D 0.08 TCGA-GD-A3OP-01 16 30735318 30735318 C G SRCAP Missense_Mutation p.L1525V 0.10 benign(0.364) TCGA-GD-A3OP-01 16 312519 312519 T C ITFG3 Missense_Mutation p.L313P 0.11 deleterious(0.01) probably_damaging(0.931) TCGA-GD-A3OP-01 16 312520 312520 C T ITFG3 Silent p.L313L 0.11 TCGA-GD-A3OP-01 16 4511851 4511851 C T NMRAL1 Missense_Mutation p.R277K 0.05 tolerated(1) benign(0) TCGA-GD-A3OP-01 16 4511853 4511853 C T NMRAL1 Silent p.L276L 0.05 TCGA-GD-A3OP-01 16 70500855 70500855 C T FUK Missense_Mutation p.P161L 0.10 tolerated(0.62) benign(0.008) TCGA-GD-A3OP-01 16 71961721 71961721 C G IST1 3'UTR 0.08 TCGA-GD-A3OP-01 16 81929432 81929432 G C PLCG2 Missense_Mutation p.D365H 0.07 deleterious(0) possibly_damaging(0.841) TCGA-GD-A3OP-01 16 81973519 81973519 C G PLCG2 Missense_Mutation p.I1112M 0.09 tolerated(0.08) benign(0.185) TCGA-GD-A3OP-01 17 10369590 10369590 G A MYH4 Silent p.Y116Y 0.10 TCGA-GD-A3OP-01 17 17754256 17754256 G A TOM1L2 Missense_Mutation p.A430V 0.10 tolerated(0.29) benign(0.002) TCGA-GD-A3OP-01 17 19186762 19186762 G C EPN2 Missense_Mutation p.Q110H 0.08 deleterious(0) probably_damaging(0.998) TCGA-GD-A3OP-01 17 19689285 19689285 C G ULK2 Missense_Mutation p.C739S 0.09 tolerated(0.58) benign(0.06) TCGA-GD-A3OP-01 17 26449721 26449721 G A NLK Missense_Mutation p.R184Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OP-01 17 29220310 29220310 A T ATAD5 Splice_Site p.X1481_splice 0.19 TCGA-GD-A3OP-01 17 29857477 29857477 C T RAB11FIP4 Missense_Mutation p.S596L 0.07 deleterious(0) probably_damaging(0.997) TCGA-GD-A3OP-01 17 2995465 2995465 T A OR1D2 Missense_Mutation p.M276L 0.08 tolerated(0.22) benign(0.006) TCGA-GD-A3OP-01 17 33285634 33285634 G A CCT6B Missense_Mutation p.S94L 0.05 deleterious(0) probably_damaging(0.967) TCGA-GD-A3OP-01 17 38711926 38711927 AA - CCR7 Frame_Shift_Del p.I68Mfs*85 0.10 TCGA-GD-A3OP-01 17 39564896 39564896 T A AC003958.2 RNA 0.10 TCGA-GD-A3OP-01 17 39777261 39777261 G C KRT17 Missense_Mutation p.T306S 0.11 tolerated(0.18) benign(0.074) TCGA-GD-A3OP-01 17 42397441 42397441 G A SLC25A39 Silent p.I336I 0.10 TCGA-GD-A3OP-01 17 45759842 45759842 G C KPNB1 3'UTR 0.13 TCGA-GD-A3OP-01 17 48941203 48941206 TGTA - TOB1 Frame_Shift_Del p.I58Tfs*2 0.09 TCGA-GD-A3OP-01 17 49043730 49043730 G A SPAG9 Missense_Mutation p.S1290L 0.08 tolerated(0.41) benign(0.005) TCGA-GD-A3OP-01 17 53046062 53046062 G A COX11 5'UTR 0.20 TCGA-GD-A3OP-01 17 54672146 54672146 G A NOG Missense_Mutation p.E188K 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-GD-A3OP-01 17 60032756 60032756 G C MED13 Missense_Mutation p.F1985L 0.14 tolerated(0.14) benign(0.094) TCGA-GD-A3OP-01 17 60059762 60059762 G T MED13 Nonsense_Mutation p.S1201* 0.05 TCGA-GD-A3OP-01 17 60059866 60059866 G T MED13 Silent p.L1166L 0.08 TCGA-GD-A3OP-01 17 62462561 62462561 G A MILR1 Missense_Mutation p.E32K 0.14 tolerated(1) benign(0) TCGA-GD-A3OP-01 17 7017471 7017471 C T ASGR2 Missense_Mutation p.R30K 0.09 tolerated(0.97) benign(0.03) TCGA-GD-A3OP-01 17 7131015 7131015 G A DVL2 Missense_Mutation p.S397F 0.07 tolerated(0.7) possibly_damaging(0.65) TCGA-GD-A3OP-01 17 72518922 72518922 G C CD300LB Missense_Mutation p.I224M 0.07 tolerated(0.24) possibly_damaging(0.553) TCGA-GD-A3OP-01 17 7530510 7530510 G C SAT2 Missense_Mutation p.F51L 0.07 tolerated(0.21) benign(0) TCGA-GD-A3OP-01 17 76136966 76136966 G C TMC8 Missense_Mutation p.E652Q 0.07 tolerated(0.12) benign(0.011) TCGA-GD-A3OP-01 17 7643790 7643790 T C DNAH2 Missense_Mutation p.S477P 0.06 possibly_damaging(0.529) TCGA-GD-A3OP-01 17 76548800 76548800 T C DNAH17 Missense_Mutation p.T756A 0.03 benign(0.009) TCGA-GD-A3OP-01 17 7674653 7674653 C T DNAH2 Silent p.I1456I 0.12 TCGA-GD-A3OP-01 17 8659711 8659711 C T SPDYE4 Silent p.L128L 0.08 TCGA-GD-A3OP-01 18 12982593 12982593 C T SEH1L Nonsense_Mutation p.Q280* 0.07 TCGA-GD-A3OP-01 18 19239256 19239256 C T ABHD3 Silent p.L239L 0.05 TCGA-GD-A3OP-01 18 47017710 47017710 C T RPL17 Intron 0.07 TCGA-GD-A3OP-01 18 72343115 72343115 C T ZNF407 Missense_Mutation p.S47F 0.08 tolerated(0.17) benign(0.002) TCGA-GD-A3OP-01 18 72343658 72343658 C T ZNF407 Missense_Mutation p.S228L 0.10 tolerated(0.12) benign(0.003) TCGA-GD-A3OP-01 18 72343946 72343946 G A ZNF407 Missense_Mutation p.G324E 0.08 tolerated(0.28) benign(0.03) TCGA-GD-A3OP-01 18 72345657 72345657 G T ZNF407 Missense_Mutation p.M894I 0.11 deleterious(0) probably_damaging(0.955) TCGA-GD-A3OP-01 19 14028882 14028882 G A CC2D1A Splice_Site p.X250_splice 0.14 TCGA-GD-A3OP-01 19 14910386 14910386 G A OR7C1 Missense_Mutation p.A188V 0.07 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-GD-A3OP-01 19 14910475 14910475 G C OR7C1 Silent p.L158L 0.04 TCGA-GD-A3OP-01 19 14910879 14910879 G T OR7C1 Missense_Mutation p.Q24K 0.03 deleterious_low_confidence(0.02) benign(0.071) TCGA-GD-A3OP-01 19 14992003 14992003 G C OR7A17 Silent p.L55L 0.07 TCGA-GD-A3OP-01 19 15508413 15508413 C T AKAP8L Silent p.K441K 0.12 TCGA-GD-A3OP-01 19 18709341 18709341 C T CRLF1 Missense_Mutation p.D200N 0.08 tolerated(0.16) benign(0.096) TCGA-GD-A3OP-01 19 18709383 18709383 C T CRLF1 Missense_Mutation p.E186K 0.11 tolerated(0.48) possibly_damaging(0.559) TCGA-GD-A3OP-01 19 20011830 20011830 G T ZNF93 5'Flank 0.05 TCGA-GD-A3OP-01 19 22379493 22379493 G C ZNF676 5'UTR 0.05 TCGA-GD-A3OP-01 19 30199175 30199175 G A C19orf12 Missense_Mutation p.P60L 0.18 tolerated(0.31) benign(0.246) TCGA-GD-A3OP-01 19 33167295 33167295 G C RGS9BP Missense_Mutation p.K42N 0.10 tolerated(0.18) benign(0.016) TCGA-GD-A3OP-01 19 37369211 37369211 G T ZNF345 3'UTR 0.06 TCGA-GD-A3OP-01 19 38126715 38126715 C T ZFP30 Missense_Mutation p.E243K 0.26 tolerated(0.19) benign(0.075) TCGA-GD-A3OP-01 19 38817601 38817601 C T KCNK6 Missense_Mutation p.R231W 0.11 deleterious(0) probably_damaging(0.997) TCGA-GD-A3OP-01 19 39915786 39915786 C T PLEKHG2 Missense_Mutation p.T1338M 0.09 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-GD-A3OP-01 19 42490310 42490310 C T ATP1A3 Silent p.K156K 0.08 TCGA-GD-A3OP-01 19 43259327 43259327 C A PSG8 Missense_Mutation p.E267D 0.05 deleterious(0.04) benign(0.375) TCGA-GD-A3OP-01 19 44891132 44891132 C T ZNF285 Silent p.E425E 0.10 TCGA-GD-A3OP-01 19 45563675 45563675 G A CLASRP Missense_Mutation p.E247K 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-GD-A3OP-01 19 49643260 49643260 G A PPFIA3 Silent p.K761K 0.04 TCGA-GD-A3OP-01 19 49867919 49867919 G A DKKL1 Missense_Mutation p.A31T 0.09 tolerated_low_confidence(0.08) benign(0.136) TCGA-GD-A3OP-01 19 50666221 50666221 C A IZUMO2 Silent p.V77V 0.07 TCGA-GD-A3OP-01 19 53644299 53644299 C T ZNF347 Silent p.E595E 0.10 TCGA-GD-A3OP-01 19 54410095 54410095 C A PRKCG Missense_Mutation p.F680L 0.06 tolerated(0.17) benign(0.045) TCGA-GD-A3OP-01 19 56896256 56896256 C G ZNF582 Missense_Mutation p.R177T 0.07 tolerated(0.13) benign(0.001) TCGA-GD-A3OP-01 19 59022230 59022230 G A SLC27A5 Silent p.L252L 0.07 TCGA-GD-A3OP-01 19 8056716 8056716 C G ELAVL1 Splice_Site 0.16 TCGA-GD-A3OP-01 1 10357056 10357056 G A KIF1B Missense_Mutation p.E609K 0.10 deleterious(0) probably_damaging(0.986) TCGA-GD-A3OP-01 1 10500432 10500432 G A APITD1 Missense_Mutation p.E80K 0.06 tolerated(0.09) possibly_damaging(0.562) TCGA-GD-A3OP-01 1 107691149 107691149 G C NTNG1 5'UTR 0.07 TCGA-GD-A3OP-01 1 111490531 111490531 G A LRIF1 3'UTR 0.11 TCGA-GD-A3OP-01 1 114128166 114128166 T G MAGI3 Silent p.P237P 0.15 TCGA-GD-A3OP-01 1 11708827 11708827 C G FBXO2 Missense_Mutation p.G272A 0.06 tolerated(0.07) benign(0.405) TCGA-GD-A3OP-01 1 119427557 119427557 C T TBX15 Missense_Mutation p.S430N 0.08 tolerated(0.45) benign(0.01) TCGA-GD-A3OP-01 1 145561190 145561190 C T ANKRD35 Missense_Mutation p.P293L 0.10 tolerated(0.51) benign(0.006) TCGA-GD-A3OP-01 1 145811455 145811455 G A GPR89A Intron 0.23 TCGA-GD-A3OP-01 1 150131673 150131673 C G PLEKHO1 Silent p.L395L 0.15 TCGA-GD-A3OP-01 1 150248191 150248191 G C C1orf54 Missense_Mutation p.E58Q 0.09 deleterious(0.04) benign(0) TCGA-GD-A3OP-01 1 151015476 151015476 G A BNIPL Missense_Mutation p.E160K 0.07 tolerated(0.11) benign(0.403) TCGA-GD-A3OP-01 1 151015532 151015532 G A BNIPL Nonsense_Mutation p.W178* 0.06 TCGA-GD-A3OP-01 1 151015865 151015865 G A BNIPL Missense_Mutation p.R225K 0.05 deleterious(0.02) benign(0.122) TCGA-GD-A3OP-01 1 151147246 151147246 G T TMOD4 Missense_Mutation p.Q36K 0.08 tolerated(0.21) benign(0.134) TCGA-GD-A3OP-01 1 152282137 152282137 G T FLG Missense_Mutation p.P1742H 0.10 possibly_damaging(0.893) TCGA-GD-A3OP-01 1 152287154 152287154 C G FLG Missense_Mutation p.D70H 0.06 benign(0.051) TCGA-GD-A3OP-01 1 153701226 153701226 C T INTS3 Missense_Mutation p.S39L 0.05 tolerated(0.67) benign(0.015) TCGA-GD-A3OP-01 1 154173021 154173021 C T C1orf189 Missense_Mutation p.G40S 0.03 tolerated(1) benign(0) TCGA-GD-A3OP-01 1 154234112 154234112 G A UBAP2L Silent p.V947V 0.04 TCGA-GD-A3OP-01 1 154698406 154698406 G A KCNN3 Nonsense_Mutation p.Q563* 0.16 TCGA-GD-A3OP-01 1 154956117 154956117 C G FLAD1 5'UTR 0.07 TCGA-GD-A3OP-01 1 154987500 154987500 C T ZBTB7B Missense_Mutation p.L156F 0.10 deleterious(0.01) probably_damaging(0.966) TCGA-GD-A3OP-01 1 156845889 156845889 C T NTRK1 Missense_Mutation p.R507C 0.07 deleterious(0) probably_damaging(0.998) TCGA-GD-A3OP-01 1 158063421 158063421 G C KIRREL Missense_Mutation p.D530H 0.05 deleterious(0.01) possibly_damaging(0.864) TCGA-GD-A3OP-01 1 158325252 158325252 A G CD1E Missense_Mutation p.N173S 0.06 tolerated(0.15) benign(0) TCGA-GD-A3OP-01 1 158687408 158687408 C A OR6K3 Silent p.L166L 0.05 TCGA-GD-A3OP-01 1 169351299 169351299 G A BLZF1 Splice_Site p.X266_splice 0.07 TCGA-GD-A3OP-01 1 17265447 17265447 C G CROCC Missense_Mutation p.S473C 0.06 probably_damaging(0.973) TCGA-GD-A3OP-01 1 17410286 17410286 C G PADI2 Missense_Mutation p.E329Q 0.08 tolerated(0.24) possibly_damaging(0.568) TCGA-GD-A3OP-01 1 178423706 178423706 G C RASAL2 Missense_Mutation p.D712H 0.08 deleterious(0) possibly_damaging(0.83) TCGA-GD-A3OP-01 1 185129970 185129970 C T SWT1 5'UTR 0.07 TCGA-GD-A3OP-01 1 186094827 186094827 A G HMCN1 Silent p.T4197T 0.07 TCGA-GD-A3OP-01 1 197390669 197390669 G A CRB1 Missense_Mutation p.E571K 0.04 deleterious(0.02) probably_damaging(1) TCGA-GD-A3OP-01 1 197641247 197641247 T G DENND1B Silent p.V72V 0.17 TCGA-GD-A3OP-01 1 201061110 201061110 C T CACNA1S Silent p.S177S 0.15 TCGA-GD-A3OP-01 1 201980309 201980309 C - ELF3 Frame_Shift_Del p.F15Lfs*28 0.15 TCGA-GD-A3OP-01 1 215901707 215901707 C T USH2A Missense_Mutation p.E3911K 0.07 benign(0.02) TCGA-GD-A3OP-01 1 220240712 220240712 G C BPNT1 Missense_Mutation p.L136V 0.05 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OP-01 1 223946938 223946938 C T CAPN2 Intron 0.17 TCGA-GD-A3OP-01 1 223959545 223959545 C T CAPN2 Silent p.I646I 0.07 TCGA-GD-A3OP-01 1 226034879 226034879 C T TMEM63A Silent p.S762S 0.06 TCGA-GD-A3OP-01 1 226564877 226564877 C T PARP1 Missense_Mutation p.A625T 0.25 tolerated(0.58) benign(0.028) TCGA-GD-A3OP-01 1 227261689 227261689 A G CDC42BPA Missense_Mutation p.F871L 0.04 tolerated(1) benign(0.001) TCGA-GD-A3OP-01 1 236180524 236180524 G A NID1 Silent p.I726I 0.04 TCGA-GD-A3OP-01 1 238049174 238049174 G A ZP4 Silent p.S284S 0.06 TCGA-GD-A3OP-01 1 240370862 240370862 G A FMN2 Missense_Mutation p.G917E 0.05 unknown(0) TCGA-GD-A3OP-01 1 247836307 247836307 C A OR13G1 Missense_Mutation p.G13C 0.15 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 1 247875997 247875997 G C OR6F1 Missense_Mutation p.Q21E 0.07 tolerated(0.5) benign(0.001) TCGA-GD-A3OP-01 1 248059764 248059764 C A OR2W3 Silent p.L292L 0.06 TCGA-GD-A3OP-01 1 248436919 248436919 G A OR2T33 Silent p.L66L 0.04 TCGA-GD-A3OP-01 1 248685808 248685808 C T OR2G6 Silent p.P287P 0.23 TCGA-GD-A3OP-01 1 249144379 249144379 G A ZNF692 3'UTR 0.14 TCGA-GD-A3OP-01 1 25824881 25824881 A G TMEM57 Missense_Mutation p.Y640C 0.09 tolerated(0.13) possibly_damaging(0.873) TCGA-GD-A3OP-01 1 28863401 28863401 G A RCC1 Silent p.V391V 0.05 TCGA-GD-A3OP-01 1 38397639 38397639 G A INPP5B Missense_Mutation p.R160C 0.04 tolerated(0.09) benign(0.309) TCGA-GD-A3OP-01 1 40432551 40432551 G A MFSD2A Missense_Mutation p.G305S 0.06 tolerated(0.15) probably_damaging(0.982) TCGA-GD-A3OP-01 1 40536608 40536608 C T CAP1 Missense_Mutation p.S434F 0.05 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 1 40928137 40928137 G C ZFP69B Missense_Mutation p.D161H 0.08 tolerated(0.07) possibly_damaging(0.58) TCGA-GD-A3OP-01 1 44450629 44450629 C T B4GALT2 Silent p.F243F 0.04 TCGA-GD-A3OP-01 1 45244065 45244065 C T RPS8 Intron 0.08 TCGA-GD-A3OP-01 1 46027485 46027485 C T AKR1A1 Silent p.L7L 0.08 TCGA-GD-A3OP-01 1 46661728 46661728 C T POMGNT1 Missense_Mutation p.E126K 0.05 benign(0.004) TCGA-GD-A3OP-01 1 46744891 46744891 C T LRRC41 Missense_Mutation p.E728K 0.12 deleterious(0.03) possibly_damaging(0.486) TCGA-GD-A3OP-01 1 53927289 53927289 T C DMRTB1 Missense_Mutation p.S241P 0.05 tolerated(0.34) benign(0.036) TCGA-GD-A3OP-01 1 6270478 6270478 G C RNF207 Missense_Mutation p.E308Q 0.05 tolerated(0.19) benign(0.217) TCGA-GD-A3OP-01 1 70503871 70503871 T C LRRC7 Silent p.N750N 0.16 TCGA-GD-A3OP-01 1 89730587 89730587 C G GBP5 Missense_Mutation p.E311Q 0.12 deleterious(0.01) possibly_damaging(0.749) TCGA-GD-A3OP-01 1 92515897 92515897 C T EPHX4 Nonsense_Mutation p.Q210* 0.05 TCGA-GD-A3OP-01 1 93297634 93297634 C G RPL5 5'UTR 0.25 TCGA-GD-A3OP-01 20 25275652 25275652 G A ABHD12 Missense_Mutation p.P391L 0.04 tolerated_low_confidence(0.19) possibly_damaging(0.851) TCGA-GD-A3OP-01 20 3128235 3128235 G C FASTKD5 Silent p.L494L 0.07 TCGA-GD-A3OP-01 20 33222438 33222438 G C PIGU Missense_Mutation p.F170L 0.08 tolerated(0.29) benign(0.307) TCGA-GD-A3OP-01 20 33356291 33356291 C A NCOA6 Nonsense_Mutation p.G164* 0.10 TCGA-GD-A3OP-01 20 34144049 34144049 C G ERGIC3 Intron 0.06 TCGA-GD-A3OP-01 20 3562848 3562848 G A ATRN Missense_Mutation p.D871N 0.11 deleterious(0.02) possibly_damaging(0.456) TCGA-GD-A3OP-01 20 3562949 3562949 G A ATRN Silent p.L904L 0.05 TCGA-GD-A3OP-01 20 36022668 36022668 G A SRC Missense_Mutation p.E181K 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-GD-A3OP-01 20 42161536 42161536 G C L3MBTL1 Missense_Mutation p.D448H 0.08 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 20 42162962 42162962 G A L3MBTL1 Silent p.E524E 0.06 TCGA-GD-A3OP-01 20 46250988 46250988 C G NCOA3 5'UTR 0.07 TCGA-GD-A3OP-01 20 46255875 46255875 G A NCOA3 Missense_Mutation p.E163K 0.06 tolerated(0.18) probably_damaging(0.988) TCGA-GD-A3OP-01 20 46255881 46255881 G A NCOA3 Missense_Mutation p.D165N 0.05 deleterious(0.02) possibly_damaging(0.644) TCGA-GD-A3OP-01 20 47706239 47706239 G A CSE1L Missense_Mutation p.E713K 0.06 tolerated(0.72) benign(0.042) TCGA-GD-A3OP-01 20 47734330 47734330 C T STAU1 Missense_Mutation p.R498K 0.10 tolerated(0.26) benign(0.01) TCGA-GD-A3OP-01 20 57042196 57042196 G T APCDD1L Missense_Mutation p.P236H 0.14 deleterious(0.04) benign(0.168) TCGA-GD-A3OP-01 21 32617916 32617916 G T TIAM1 Missense_Mutation p.P491H 0.07 deleterious(0.03) possibly_damaging(0.607) TCGA-GD-A3OP-01 21 43496222 43496222 G A UMODL1 Missense_Mutation p.G62D 0.05 deleterious(0) probably_damaging(0.969) TCGA-GD-A3OP-01 21 43691217 43691217 C G ABCG1 Missense_Mutation p.F108L 0.09 tolerated(0.15) benign(0.186) TCGA-GD-A3OP-01 22 17119516 17119516 C A TPTEP1 RNA 0.09 TCGA-GD-A3OP-01 22 23135470 23135470 C G IGLV2-11 Nonsense_Mutation p.S111* 0.10 TCGA-GD-A3OP-01 22 25599847 25599847 C G CRYBB3 Silent p.L104L 0.10 TCGA-GD-A3OP-01 22 31533774 31533774 G A PLA2G3 Nonsense_Mutation p.Q330* 0.07 TCGA-GD-A3OP-01 22 36712697 36712697 C T MYH9 Silent p.E415E 0.06 TCGA-GD-A3OP-01 22 38609853 38609853 C T MAFF 5'UTR 0.06 TCGA-GD-A3OP-01 22 40755278 40755278 C G ADSL Missense_Mutation p.D223E 0.06 tolerated(0.08) benign(0.44) TCGA-GD-A3OP-01 22 43619192 43619192 G A SCUBE1 Missense_Mutation p.T413I 0.07 tolerated(0.15) benign(0.04) TCGA-GD-A3OP-01 2 108507243 108507243 G A RGPD4 3'UTR 0.10 TCGA-GD-A3OP-01 2 152553184 152553184 T C NEB Silent p.L512L 0.07 TCGA-GD-A3OP-01 2 179482573 179482573 G A TTN Silent p.A15835A 0.08 TCGA-GD-A3OP-01 2 179497319 179497319 C G TTN Missense_Mutation p.E14472Q 0.10 TCGA-GD-A3OP-01 2 179575936 179575936 C G TTN Missense_Mutation p.D9343H 0.07 TCGA-GD-A3OP-01 2 179577067 179577067 G T TTN Silent p.S9194S 0.07 TCGA-GD-A3OP-01 2 179720159 179720159 T A CCDC141 Missense_Mutation p.K992I 0.05 deleterious(0) probably_damaging(0.935) TCGA-GD-A3OP-01 2 182543034 182543034 G A NEUROD1 Missense_Mutation p.A185V 0.09 deleterious(0) probably_damaging(0.967) TCGA-GD-A3OP-01 2 183993048 183993048 C T NUP35 Missense_Mutation p.S25F 0.08 deleterious(0) probably_damaging(0.969) TCGA-GD-A3OP-01 2 190333285 190333285 G A WDR75 Silent p.L571L 0.06 TCGA-GD-A3OP-01 2 201853102 201853102 C T FAM126B Missense_Mutation p.D292N 0.09 tolerated(0.23) possibly_damaging(0.848) TCGA-GD-A3OP-01 2 210560669 210560669 G A MAP2 Missense_Mutation p.D1259N 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-GD-A3OP-01 2 216965210 216965210 C G TMEM169 Nonsense_Mutation p.S280* 0.07 TCGA-GD-A3OP-01 2 220077977 220077977 G A ABCB6 Silent p.F597F 0.10 TCGA-GD-A3OP-01 2 231041299 231041299 G C SP110 Intron 0.10 TCGA-GD-A3OP-01 2 24194153 24194153 G A UBXN2A Missense_Mutation p.E17K 0.07 tolerated(0.47) benign(0.009) TCGA-GD-A3OP-01 2 27248831 27248831 C G MAPRE3 Missense_Mutation p.I236M 0.13 tolerated(0.11) possibly_damaging(0.588) TCGA-GD-A3OP-01 2 27805353 27805353 C T C2orf16 Missense_Mutation p.P1972S 0.09 tolerated_low_confidence(0.27) unknown(0) TCGA-GD-A3OP-01 2 27850025 27850025 C G CCDC121 Missense_Mutation p.Q376H 0.18 tolerated(0.09) possibly_damaging(0.896) TCGA-GD-A3OP-01 2 27900720 27900720 G A SLC4A1AP Silent p.L564L 0.12 TCGA-GD-A3OP-01 2 32475775 32475775 G C NLRC4 Missense_Mutation p.F386L 0.14 tolerated(0.54) benign(0.003) TCGA-GD-A3OP-01 2 32668572 32668572 G T BIRC6 Missense_Mutation p.D1418Y 0.12 benign(0.44) TCGA-GD-A3OP-01 2 32670646 32670646 G A BIRC6 Missense_Mutation p.G1465E 0.25 benign(0.002) TCGA-GD-A3OP-01 2 32673888 32673888 G A BIRC6 Missense_Mutation p.D1504N 0.21 probably_damaging(0.989) TCGA-GD-A3OP-01 2 38570616 38570616 C G ATL2 Missense_Mutation p.E53Q 0.10 deleterious(0.04) benign(0.192) TCGA-GD-A3OP-01 2 50850623 50850623 C T NRXN1 Missense_Mutation p.M354I 0.11 tolerated(0.4) benign(0.153) TCGA-GD-A3OP-01 2 54081274 54081274 T C GPR75 Missense_Mutation p.Y207C 0.05 deleterious(0) probably_damaging(0.933) TCGA-GD-A3OP-01 2 54081280 54081280 G C GPR75 Missense_Mutation p.S205C 0.06 tolerated(0.12) probably_damaging(0.954) TCGA-GD-A3OP-01 2 64863402 64863402 C T SERTAD2 Missense_Mutation p.E202K 0.23 tolerated(0.85) benign(0.015) TCGA-GD-A3OP-01 2 84806721 84806721 C A DNAH6 Missense_Mutation p.A716E 0.24 tolerated(0.07) benign(0.091) TCGA-GD-A3OP-01 2 84806722 84806722 A G DNAH6 Silent p.A716A 0.24 TCGA-GD-A3OP-01 2 85836116 85836116 G C C2orf68 Silent p.L151L 0.06 TCGA-GD-A3OP-01 2 95537570 95537570 C T TEKT4 Silent p.R82R 0.20 TCGA-GD-A3OP-01 2 99413948 99413948 C T KIAA1211L Silent p.A823A 0.11 TCGA-GD-A3OP-01 3 101283942 101283942 G C TRMT10C Missense_Mutation p.R106T 0.07 deleterious(0) benign(0.119) TCGA-GD-A3OP-01 3 101373573 101373573 C T ZBTB11 Missense_Mutation p.E762K 0.10 tolerated(0.06) benign(0.437) TCGA-GD-A3OP-01 3 108273331 108273331 T C KIAA1524 Missense_Mutation p.E739G 0.20 tolerated(0.06) benign(0.315) TCGA-GD-A3OP-01 3 112299549 112299549 C T SLC35A5 Silent p.F195F 0.11 TCGA-GD-A3OP-01 3 11301168 11301168 C T HRH1 Silent p.L149L 0.06 TCGA-GD-A3OP-01 3 126157291 126157291 G A ZXDC Missense_Mutation p.S835L 0.09 tolerated(0.12) benign(0.022) TCGA-GD-A3OP-01 3 132418250 132418250 C T NPHP3 Silent p.V644V 0.08 TCGA-GD-A3OP-01 3 133661560 133661560 C T SLCO2A1 Missense_Mutation p.G505E 0.15 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OP-01 3 13401814 13401814 G T NUP210 Missense_Mutation p.Q704K 0.17 tolerated(0.12) benign(0.034) TCGA-GD-A3OP-01 3 156395594 156395594 G A TIPARP Silent p.L36L 0.09 TCGA-GD-A3OP-01 3 178927486 178927486 G A PIK3CA Missense_Mutation p.E417K 0.12 tolerated(0.49) benign(0.248) TCGA-GD-A3OP-01 3 179080190 179080190 G A MFN1 Silent p.L152L 0.07 TCGA-GD-A3OP-01 3 182769981 182769981 G A MCCC1 Silent p.V307V 0.09 TCGA-GD-A3OP-01 3 195608974 195608974 G A TNK2 Nonsense_Mutation p.Q342* 0.08 TCGA-GD-A3OP-01 3 35729240 35729240 C A ARPP21 Missense_Mutation p.H91N 0.12 deleterious(0.01) benign(0.015) TCGA-GD-A3OP-01 3 36896768 36896768 C A TRANK1 Missense_Mutation p.R1438L 0.13 tolerated(0.08) benign(0.203) TCGA-GD-A3OP-01 3 38048129 38048129 G A VILL Missense_Mutation p.E799K 0.19 deleterious(0.02) benign(0.049) TCGA-GD-A3OP-01 3 38163892 38163892 C G DLEC1 Missense_Mutation p.H1753D 0.06 deleterious_low_confidence(0.01) benign(0.156) TCGA-GD-A3OP-01 3 42226217 42226217 C A TRAK1 Nonsense_Mutation p.S135* 0.06 TCGA-GD-A3OP-01 3 42226284 42226284 C T TRAK1 Silent p.I157I 0.06 TCGA-GD-A3OP-01 3 46942574 46942574 G A PTH1R Missense_Mutation p.G350R 0.15 tolerated(1) benign(0.014) TCGA-GD-A3OP-01 3 49043188 49043188 C T P4HTM Missense_Mutation p.S412L 0.04 tolerated(0.23) possibly_damaging(0.504) TCGA-GD-A3OP-01 3 49137079 49137079 G A QARS Missense_Mutation p.R464C 0.26 deleterious(0) probably_damaging(0.992) TCGA-GD-A3OP-01 3 52237973 52237978 GCAAAA - ALAS1 In_Frame_Del p.K176_Q177del 0.16 TCGA-GD-A3OP-01 3 52836749 52836749 C T ITIH3 Missense_Mutation p.R546W 0.07 deleterious(0) possibly_damaging(0.462) TCGA-GD-A3OP-01 3 74535680 74535680 T C CNTN3 Silent p.T95T 0.06 TCGA-GD-A3OP-01 3 81586104 81586104 C T GBE1 Missense_Mutation p.M587I 0.05 deleterious(0.03) probably_damaging(0.989) TCGA-GD-A3OP-01 3 98002337 98002337 A G OR5H2 Silent p.L202L 0.24 TCGA-GD-A3OP-01 3 98217064 98217064 T C OR5K2 Silent p.D180D 0.05 TCGA-GD-A3OP-01 3 98235645 98235645 T C CLDND1 Missense_Mutation p.N230S 0.18 tolerated(0.61) benign(0.028) TCGA-GD-A3OP-01 4 106614625 106614625 C T INTS12 Missense_Mutation p.E110K 0.05 tolerated(0.07) possibly_damaging(0.554) TCGA-GD-A3OP-01 4 108911132 108911132 C T HADH Missense_Mutation p.S15L 0.07 tolerated(0.07) benign(0.239) TCGA-GD-A3OP-01 4 123977578 123977578 G C SPATA5 Missense_Mutation p.E706Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OP-01 4 13605601 13605601 C G BOD1L1 Missense_Mutation p.E975Q 0.07 possibly_damaging(0.884) TCGA-GD-A3OP-01 4 13605643 13605643 C T BOD1L1 Missense_Mutation p.E961K 0.05 probably_damaging(0.977) TCGA-GD-A3OP-01 4 138453254 138453254 T C PCDH18 5'UTR 0.07 TCGA-GD-A3OP-01 4 154237060 154237060 C T TRIM2 Missense_Mutation p.T564I 0.07 deleterious(0) probably_damaging(0.987) TCGA-GD-A3OP-01 4 15504503 15504503 G A CC2D2A Missense_Mutation p.R132Q 0.13 tolerated_low_confidence(0.56) benign(0.004) TCGA-GD-A3OP-01 4 164271709 164271709 C T NPY5R Missense_Mutation p.S95L 0.05 tolerated(0.49) possibly_damaging(0.592) TCGA-GD-A3OP-01 4 164393349 164393349 C T TKTL2 Missense_Mutation p.G513E 0.10 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 4 183673159 183673159 T C TENM3 Missense_Mutation p.V1279A 0.16 tolerated(0.37) benign(0.001) TCGA-GD-A3OP-01 4 3214330 3214330 G A HTT Missense_Mutation p.R2223Q 0.07 benign(0.025) TCGA-GD-A3OP-01 4 39512009 39512009 G C UGDH Silent p.L209L 0.06 TCGA-GD-A3OP-01 4 41984112 41984112 C G DCAF4L1 Missense_Mutation p.I101M 0.08 deleterious(0.01) possibly_damaging(0.903) TCGA-GD-A3OP-01 4 48169865 48169865 C T TEC Missense_Mutation p.E201K 0.06 tolerated(0.92) benign(0.006) TCGA-GD-A3OP-01 4 55958791 55958791 G A KDR Missense_Mutation p.S1021L 0.10 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 4 56819371 56819371 G C CEP135 Missense_Mutation p.L78F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-GD-A3OP-01 4 5961300 5961300 G A C4orf50 Silent p.V685V 0.09 TCGA-GD-A3OP-01 4 6843853 6843853 G A KIAA0232 Silent p.K97K 0.08 TCGA-GD-A3OP-01 4 71468378 71468378 C T AMBN Missense_Mutation p.S190L 0.06 tolerated(0.23) benign(0) TCGA-GD-A3OP-01 4 72634130 72634130 C G GC Missense_Mutation p.R69T 0.05 deleterious(0) probably_damaging(0.978) TCGA-GD-A3OP-01 4 844870 844870 G A GAK Nonsense_Mutation p.Q1171* 0.07 TCGA-GD-A3OP-01 4 88766951 88766951 G A MEPE Missense_Mutation p.E311K 0.15 tolerated(0.31) benign(0.004) TCGA-GD-A3OP-01 5 118728967 118728967 C T TNFAIP8 Missense_Mutation p.S163L 0.05 deleterious(0) benign(0.245) TCGA-GD-A3OP-01 5 140553379 140553379 C T PCDHB7 Silent p.A321A 0.07 TCGA-GD-A3OP-01 5 140751513 140751513 C T PCDHGB3 Nonsense_Mutation p.R518* 0.06 TCGA-GD-A3OP-01 5 14399069 14399069 C T TRIO Nonsense_Mutation p.R1502* 0.07 TCGA-GD-A3OP-01 5 147928367 147928367 C T HTR4 Missense_Mutation p.V73M 0.07 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 5 149677553 149677553 G A ARSI Nonsense_Mutation p.R312* 0.09 TCGA-GD-A3OP-01 5 169494582 169494582 G T DOCK2 Missense_Mutation p.M1512I 0.06 tolerated(0.12) benign(0.04) TCGA-GD-A3OP-01 5 171765985 171765985 G A SH3PXD2B Silent p.R708R 0.12 TCGA-GD-A3OP-01 5 176370462 176370462 C T UIMC1 Missense_Mutation p.E491K 0.07 tolerated(0.4) benign(0.012) TCGA-GD-A3OP-01 5 178541064 178541064 G T ADAMTS2 Missense_Mutation p.S1147Y 0.08 deleterious(0.05) benign(0.396) TCGA-GD-A3OP-01 5 39392476 39392476 C G DAB2 Missense_Mutation p.E107D 0.05 deleterious(0.01) benign(0.128) TCGA-GD-A3OP-01 5 45303797 45303797 C T HCN1 Missense_Mutation p.V508M 0.12 tolerated(0.07) probably_damaging(0.997) TCGA-GD-A3OP-01 5 54404206 54404206 G A GZMA Missense_Mutation p.G204E 0.07 tolerated(0.49) possibly_damaging(0.447) TCGA-GD-A3OP-01 5 54404209 54404209 G A GZMA Missense_Mutation p.R205K 0.08 tolerated(1) benign(0) TCGA-GD-A3OP-01 5 66479570 66479570 C G CD180 Missense_Mutation p.E367D 0.10 deleterious(0.02) benign(0.061) TCGA-GD-A3OP-01 5 70308245 70308245 G A NAIP Silent p.F166F 0.05 TCGA-GD-A3OP-01 5 76736796 76736796 C A WDR41 Missense_Mutation p.V242F 0.08 deleterious(0.05) possibly_damaging(0.593) TCGA-GD-A3OP-01 5 78260315 78260315 C T ARSB Missense_Mutation p.G205E 0.13 tolerated(1) benign(0.009) TCGA-GD-A3OP-01 5 98209411 98209411 G A CHD1 Nonsense_Mutation p.R1153* 0.09 TCGA-GD-A3OP-01 6 116956964 116956964 C T ZUFSP 3'UTR 0.10 TCGA-GD-A3OP-01 6 131923477 131923477 G T MED23 Nonsense_Mutation p.S659* 0.08 TCGA-GD-A3OP-01 6 153073417 153073417 C T VIP Silent p.L35L 0.12 TCGA-GD-A3OP-01 6 160663435 160663435 C G SLC22A2 Splice_Site p.X427_splice 0.10 TCGA-GD-A3OP-01 6 167352457 167352457 C T RNASET2 Silent p.Q124Q 0.08 TCGA-GD-A3OP-01 6 26199108 26199108 C G HIST1H2AD Missense_Mutation p.E122Q 0.14 tolerated_low_confidence(0.06) benign(0.002) TCGA-GD-A3OP-01 6 2683270 2683270 G C MYLK4 Silent p.L224L 0.14 TCGA-GD-A3OP-01 6 27101102 27101102 C A HIST1H2AG Silent p.L84L 0.11 TCGA-GD-A3OP-01 6 27777942 27777942 C T HIST1H3H Missense_Mutation p.P31S 0.07 deleterious_low_confidence(0.02) benign(0) TCGA-GD-A3OP-01 6 29797699 29797699 G A HLA-G Silent p.K334K 0.11 TCGA-GD-A3OP-01 6 31785445 31785445 G A HSPA1A Missense_Mutation p.E638K 0.07 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-GD-A3OP-01 6 43012542 43012542 C G CUL7 Missense_Mutation p.K1124N 0.06 deleterious(0) probably_damaging(0.979) TCGA-GD-A3OP-01 7 117431578 117431578 G A CTTNBP2 Missense_Mutation p.P558S 0.06 tolerated(0.07) possibly_damaging(0.902) TCGA-GD-A3OP-01 7 119915122 119915122 G T KCND2 Nonsense_Mutation p.E146* 0.09 TCGA-GD-A3OP-01 7 122130198 122130198 G A CADPS2 Missense_Mutation p.P597S 0.05 deleterious(0) benign(0.36) TCGA-GD-A3OP-01 7 124503433 124503433 C T POT1 Missense_Mutation p.E173K 0.12 tolerated(0.61) benign(0.006) TCGA-GD-A3OP-01 7 128845541 128845541 G T SMO Missense_Mutation p.G280C 0.21 deleterious(0) probably_damaging(1) TCGA-GD-A3OP-01 7 139026236 139026236 C G LUC7L2 Missense_Mutation p.R36G 0.09 deleterious_low_confidence(0) benign(0.019) TCGA-GD-A3OP-01 7 140051177 140051177 C T SLC37A3 Missense_Mutation p.E260K 0.07 tolerated(0.27) benign(0.41) TCGA-GD-A3OP-01 7 140051237 140051237 C G SLC37A3 Missense_Mutation p.E240Q 0.04 tolerated(0.13) benign(0.281) TCGA-GD-A3OP-01 7 140494157 140494157 G A BRAF Missense_Mutation p.S364L 0.10 deleterious(0) benign(0.293) TCGA-GD-A3OP-01 7 142180721 142180721 C T TRBV6-5 Missense_Mutation p.M46I 0.03 tolerated(0.06) benign(0.403) TCGA-GD-A3OP-01 7 142636653 142636653 G A C7orf34 Missense_Mutation p.E4K 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.801) TCGA-GD-A3OP-01 7 150777000 150777000 G A FASTK Missense_Mutation p.S31L 0.31 deleterious_low_confidence(0) benign(0.11) TCGA-GD-A3OP-01 7 151188091 151188091 G A RHEB Missense_Mutation p.S21L 0.05 deleterious(0) possibly_damaging(0.905) TCGA-GD-A3OP-01 7 15652020 15652020 G A MEOX2 Missense_Mutation p.H303Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-GD-A3OP-01 7 17382605 17382605 C T AHR Nonsense_Mutation p.Q822* 0.13 TCGA-GD-A3OP-01 7 45016619 45016619 C T MYO1G Silent p.V49V 0.11 TCGA-GD-A3OP-01 7 6080762 6080762 C T EIF2AK1 Missense_Mutation p.E294K 0.10 tolerated(0.25) benign(0.003) TCGA-GD-A3OP-01 7 6431604 6431604 C G RAC1 Missense_Mutation p.L53V 0.06 deleterious(0) probably_damaging(0.971) TCGA-GD-A3OP-01 7 70886076 70886076 C A WBSCR17 Missense_Mutation p.P316H 0.08 tolerated(0.11) possibly_damaging(0.819) TCGA-GD-A3OP-01 7 71036334 71036334 C G WBSCR17 Missense_Mutation p.L343V 0.06 deleterious(0.02) possibly_damaging(0.455) TCGA-GD-A3OP-01 7 896032 896032 C - SUN1 Frame_Shift_Del p.T463Kfs*23 0.08 TCGA-GD-A3OP-01 7 93108727 93108727 C T CALCR Missense_Mutation p.M66I 0.08 tolerated(1) benign(0.046) TCGA-GD-A3OP-01 7 99796487 99796487 G A STAG3 Silent p.E458E 0.06 TCGA-GD-A3OP-01 8 105511661 105511661 C T LRP12 Missense_Mutation p.R120K 0.06 tolerated(0.32) benign(0.097) TCGA-GD-A3OP-01 8 110487424 110487424 C T PKHD1L1 Missense_Mutation p.H2895Y 0.38 deleterious(0.04) benign(0.438) TCGA-GD-A3OP-01 8 110495274 110495274 C G PKHD1L1 Silent p.L3172L 0.12 TCGA-GD-A3OP-01 8 114326926 114326926 G T CSMD3 Missense_Mutation p.T92K 0.06 deleterious(0) benign(0.232) TCGA-GD-A3OP-01 8 141549523 141549523 C A AGO2 Nonsense_Mutation p.E689* 0.06 TCGA-GD-A3OP-01 8 20110556 20110556 C T LZTS1 Missense_Mutation p.E296K 0.09 deleterious(0) benign(0.386) TCGA-GD-A3OP-01 8 24776021 24776021 G A NEFM Missense_Mutation p.E885K 0.05 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-GD-A3OP-01 8 25280738 25280738 C T GNRH1 Missense_Mutation p.D37N 0.07 tolerated(1) benign(0.001) TCGA-GD-A3OP-01 8 28974498 28974498 G A KIF13B Silent p.S1229S 0.04 TCGA-GD-A3OP-01 8 61735145 61735145 G A CHD7 Missense_Mutation p.G1014E 0.06 probably_damaging(0.942) TCGA-GD-A3OP-01 8 61749458 61749458 G A CHD7 Missense_Mutation p.D1358N 0.20 probably_damaging(0.998) TCGA-GD-A3OP-01 8 67040613 67040613 T C TRIM55 Silent p.C81C 0.23 TCGA-GD-A3OP-01 8 70744345 70744345 G A SLCO5A1 Silent p.F188F 0.06 TCGA-GD-A3OP-01 8 90990452 90990452 C T NBN Missense_Mutation p.E194K 0.06 tolerated(0.08) benign(0.045) TCGA-GD-A3OP-01 8 90993657 90993657 C T NBN Missense_Mutation p.R89Q 0.04 tolerated(0.55) benign(0.015) TCGA-GD-A3OP-01 8 92374633 92374633 G C SLC26A7 Missense_Mutation p.G456A 0.08 deleterious(0.01) probably_damaging(1) TCGA-GD-A3OP-01 8 95658419 95658419 C A ESRP1 Missense_Mutation p.F133L 0.05 deleterious(0.03) probably_damaging(0.962) TCGA-GD-A3OP-01 8 98718973 98718973 C T MTDH Nonsense_Mutation p.Q423* 0.03 TCGA-GD-A3OP-01 9 103312381 103312381 A T TMEFF1 Silent p.T238T 0.06 TCGA-GD-A3OP-01 9 106894344 106894344 C T SMC2 Missense_Mutation p.L1016F 0.10 deleterious(0.02) benign(0.081) TCGA-GD-A3OP-01 9 128088742 128088742 C T GAPVD1 Missense_Mutation p.R636C 0.05 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OP-01 9 131843386 131843386 C G DOLPP1 5'UTR 0.06 TCGA-GD-A3OP-01 9 131843433 131843433 C G DOLPP1 Missense_Mutation p.S8W 0.11 tolerated_low_confidence(0.18) possibly_damaging(0.735) TCGA-GD-A3OP-01 9 132631586 132631586 C T USP20 Intron 0.10 TCGA-GD-A3OP-01 9 133759972 133759972 G A ABL1 Silent p.K784K 0.09 TCGA-GD-A3OP-01 9 17457539 17457539 G A CNTLN Silent p.L1044L 0.06 TCGA-GD-A3OP-01 9 18776929 18776929 C T ADAMTSL1 Missense_Mutation p.A901V 0.09 tolerated(1) benign(0.001) TCGA-GD-A3OP-01 9 32500809 32500809 G A DDX58 Missense_Mutation p.H79Y 0.04 tolerated(0.47) benign(0.162) TCGA-GD-A3OP-01 9 5358254 5358254 G C PLGRKT Missense_Mutation p.F143L 0.05 tolerated_low_confidence(0.21) benign(0.004) TCGA-GD-A3OP-01 9 86004545 86004545 G A FRMD3 Missense_Mutation p.R76C 0.05 deleterious(0) possibly_damaging(0.88) TCGA-GD-A3OP-01 9 87338522 87338522 C T NTRK2 Silent p.L206L 0.08 TCGA-GD-A3OP-01 X 100169786 100169786 A T XKRX Missense_Mutation p.N297K 0.05 deleterious(0.02) benign(0.065) TCGA-GD-A3OP-01 X 100617172 100617172 C T BTK Missense_Mutation p.E193K 0.05 tolerated(0.18) benign(0.052) TCGA-GD-A3OP-01 X 105970542 105970542 T C RNF128 Silent p.H133H 0.07 TCGA-GD-A3OP-01 X 109765026 109765026 T C TDGF1P3 RNA 0.28 TCGA-GD-A3OP-01 X 110970869 110970869 G A ALG13 Missense_Mutation p.M706I 0.09 deleterious(0.04) benign(0.051) TCGA-GD-A3OP-01 X 118284333 118284333 T C KIAA1210 Silent p.A70A 0.12 TCGA-GD-A3OP-01 X 118977197 118977197 C G UPF3B Missense_Mutation p.E179D 0.05 deleterious(0) probably_damaging(0.998) TCGA-GD-A3OP-01 X 119670883 119670883 G A CUL4B Nonsense_Mutation p.Q667* 0.09 TCGA-GD-A3OP-01 X 125299261 125299261 G T DCAF12L2 Missense_Mutation p.T216N 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-GD-A3OP-01 X 12724949 12724949 C G FRMPD4 Missense_Mutation p.S401C 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-GD-A3OP-01 X 14027076 14027076 G T GEMIN8 Silent p.R229R 0.06 TCGA-GD-A3OP-01 X 152821836 152821836 G A ATP2B3 Silent p.L762L 0.10 TCGA-GD-A3OP-01 X 153224215 153224215 C A HCFC1 Silent p.V536V 0.11 TCGA-GD-A3OP-01 X 153596245 153596245 C T FLNA Missense_Mutation p.R196Q 0.14 deleterious(0) benign(0.048) TCGA-GD-A3OP-01 X 153626908 153626908 C T RPL10 Intron 0.07 TCGA-GD-A3OP-01 X 15818001 15818001 C G ZRSR2 Nonsense_Mutation p.S43* 0.06 TCGA-GD-A3OP-01 X 16707722 16707722 G A CTPS2 Silent p.V241V 0.05 TCGA-GD-A3OP-01 X 18822166 18822166 G A PPEF1 Missense_Mutation p.E408K 0.08 deleterious(0.02) possibly_damaging(0.852) TCGA-GD-A3OP-01 X 19764521 19764521 G A SH3KBP1 Silent p.N67N 0.10 TCGA-GD-A3OP-01 X 27840500 27840500 A G MAGEB10 3'UTR 0.20 TCGA-GD-A3OP-01 X 32328262 32328262 G C DMD Silent p.L2018L 0.06 TCGA-GD-A3OP-01 X 48214125 48214125 G C SSX3 Silent p.V42V 0.06 TCGA-GD-A3OP-01 X 48855860 48855860 C G GRIPAP1 Missense_Mutation p.K33N 0.06 probably_damaging(0.996) TCGA-GD-A3OP-01 X 52825328 52825328 G C SPANXN5 3'UTR 0.09 TCGA-GD-A3OP-01 X 54784222 54784222 G A ITIH6 Missense_Mutation p.P762L 0.06 tolerated(0.17) benign(0.001) TCGA-GD-A3OP-01 X 65253645 65253645 C G VSIG4 Missense_Mutation p.S28T 0.07 tolerated(0.09) benign(0.165) TCGA-GD-A3OP-01 X 70832864 70832864 G A ACRC 3'UTR 0.06 TCGA-GD-A3OP-01 X 73068445 73068445 T C XIST RNA 0.14 TCGA-GD-A3OP-01 X 76938191 76938191 C A ATRX Nonsense_Mutation p.E853* 0.05 TCGA-GD-A3OP-01 X 78010591 78010591 T A LPAR4 Silent p.A75A 0.04 TCGA-GD-A3OP-01 X 78010794 78010794 C G LPAR4 Missense_Mutation p.P143R 0.04 deleterious(0) probably_damaging(1) TCGA-GD-A3OQ-01 10 121551496 121551496 C T INPP5F Missense_Mutation p.S187F 0.12 deleterious(0) probably_damaging(0.984) TCGA-GD-A3OQ-01 10 127483469 127483469 C T UROS Missense_Mutation p.D214N 0.08 tolerated(0.11) benign(0.032) TCGA-GD-A3OQ-01 10 48414152 48414152 G A GDF2 Missense_Mutation p.T239M 0.39 tolerated(0.07) possibly_damaging(0.533) TCGA-GD-A3OQ-01 10 70166569 70166570 - A RUFY2 Frame_Shift_Ins p.L17Ffs*6 0.29 TCGA-GD-A3OQ-01 10 70531073 70531074 - A CCAR1 Frame_Shift_Ins p.S806Kfs*5 0.24 TCGA-GD-A3OQ-01 10 75214224 75214224 G C PPP3CB Missense_Mutation p.L378V 0.08 deleterious(0.01) possibly_damaging(0.64) TCGA-GD-A3OQ-01 10 91511157 91511157 A G KIF20B Missense_Mutation p.Q1344R 0.11 deleterious(0) probably_damaging(0.997) TCGA-GD-A3OQ-01 10 99327844 99327844 G A UBTD1 Missense_Mutation p.D82N 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-GD-A3OQ-01 11 12030017 12030017 A T DKK3 Missense_Mutation p.L38H 0.85 tolerated(0.12) possibly_damaging(0.885) TCGA-GD-A3OQ-01 11 17793941 17793941 G A KCNC1 Missense_Mutation p.V434I 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-GD-A3OQ-01 11 3147784 3147784 C T OSBPL5 Silent p.G46G 0.11 TCGA-GD-A3OQ-01 11 534288 534288 C T HRAS Missense_Mutation p.G12D 0.74 deleterious(0) possibly_damaging(0.56) TCGA-GD-A3OQ-01 11 55658785 55658785 C T TRIM51 Missense_Mutation p.H346Y 0.11 tolerated(0.41) benign(0.022) TCGA-GD-A3OQ-01 11 65403111 65403111 C T PCNXL3 Missense_Mutation p.R1766C 0.28 deleterious(0) probably_damaging(1) TCGA-GD-A3OQ-01 11 75277927 75277927 C T SERPINH1 Missense_Mutation p.A178V 0.12 tolerated(0.06) possibly_damaging(0.834) TCGA-GD-A3OQ-01 12 21958155 21958155 C T ABCC9 Intron 0.15 TCGA-GD-A3OQ-01 12 23699264 23699264 C G SOX5 Missense_Mutation p.S528T 0.05 tolerated(0.23) probably_damaging(0.977) TCGA-GD-A3OQ-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.36 deleterious(0.05) possibly_damaging(0.789) TCGA-GD-A3OQ-01 12 81568654 81568654 G A ACSS3 Missense_Mutation p.A396T 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-GD-A3OQ-01 13 114748751 114748751 G A RASA3 3'UTR 0.45 TCGA-GD-A3OQ-01 13 36202338 36202338 G A NBEA Missense_Mutation p.E2524K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-GD-A3OQ-01 14 104618365 104618365 C T KIF26A Missense_Mutation p.S101F 0.10 deleterious(0) possibly_damaging(0.87) TCGA-GD-A3OQ-01 14 23244697 23244697 T C SLC7A7 Missense_Mutation p.I351V 0.14 tolerated(0.09) benign(0.118) TCGA-GD-A3OQ-01 14 24438068 24438068 G A DHRS4 Silent p.P275P 0.30 TCGA-GD-A3OQ-01 14 32563175 32563175 A G ARHGAP5 Silent p.K1100K 0.34 TCGA-GD-A3OQ-01 14 50360895 50360895 G A ARF6 Silent p.R147R 0.12 TCGA-GD-A3OQ-01 14 71199958 71199958 C T MAP3K9 Missense_Mutation p.D724N 0.09 tolerated(0.08) possibly_damaging(0.607) TCGA-GD-A3OQ-01 14 75470268 75470268 G A EIF2B2 Missense_Mutation p.S100N 0.30 tolerated(0.27) benign(0.003) TCGA-GD-A3OQ-01 14 78023407 78023407 G A SPTLC2 Silent p.L311L 0.08 TCGA-GD-A3OQ-01 14 78023409 78023409 G A SPTLC2 Missense_Mutation p.L311F 0.07 tolerated(0.05) possibly_damaging(0.739) TCGA-GD-A3OQ-01 15 34647806 34647806 G A NUTM1 Missense_Mutation p.D505N 0.11 deleterious(0.04) benign(0.028) TCGA-GD-A3OQ-01 15 34648553 34648553 G T NUTM1 Nonsense_Mutation p.E754* 0.08 TCGA-GD-A3OQ-01 15 62228840 62228840 C G VPS13C Missense_Mutation p.R1904T 0.13 tolerated(0.64) benign(0.063) TCGA-GD-A3OQ-01 15 75310744 75310744 G A SCAMP5 Intron 0.38 TCGA-GD-A3OQ-01 15 80215314 80215314 G A C15orf37 Missense_Mutation p.E67K 0.13 possibly_damaging(0.502) TCGA-GD-A3OQ-01 15 90771546 90771546 G T SEMA4B Missense_Mutation p.V729L 0.19 tolerated(1) benign(0.062) TCGA-GD-A3OQ-01 15 93015655 93015655 G C C15orf32 Missense_Mutation p.D93H 0.16 deleterious_low_confidence(0.04) benign(0.307) TCGA-GD-A3OQ-01 16 21968590 21968590 A C UQCRC2 Missense_Mutation p.K23T 0.44 tolerated(0.14) benign(0.006) TCGA-GD-A3OQ-01 16 70012016 70012016 C T PDXDC2P Splice_Site 0.13 TCGA-GD-A3OQ-01 16 81712168 81712168 G A CMIP Missense_Mutation p.M441I 0.44 tolerated_low_confidence(0.36) benign(0) TCGA-GD-A3OQ-01 17 18647451 18647451 G C FBXW10 5'UTR 0.14 TCGA-GD-A3OQ-01 17 29119551 29119551 C T CRLF3 Missense_Mutation p.R289Q 0.22 deleterious(0.02) benign(0.396) TCGA-GD-A3OQ-01 17 33903110 33903110 G A PEX12 Silent p.F257F 0.33 TCGA-GD-A3OQ-01 17 34001199 34001199 G C AP2B1 Missense_Mutation p.W728S 0.10 tolerated(0.08) possibly_damaging(0.835) TCGA-GD-A3OQ-01 17 37687082 37687082 C T CDK12 Missense_Mutation p.S1329F 0.43 benign(0.425) TCGA-GD-A3OQ-01 17 45787901 45787901 G A TBKBP1 Missense_Mutation p.C586Y 0.06 deleterious(0) unknown(0) TCGA-GD-A3OQ-01 17 48699087 48699087 C G CACNA1G Missense_Mutation p.L1998V 0.11 tolerated(0.22) benign(0.012) TCGA-GD-A3OQ-01 18 54547217 54547217 C G WDR7 Missense_Mutation p.S1116C 0.07 tolerated(0.07) benign(0.014) TCGA-GD-A3OQ-01 19 16008382 16008382 C G CYP4F2 Missense_Mutation p.V14L 0.18 tolerated(0.33) benign(0.002) TCGA-GD-A3OQ-01 19 1924163 1924163 G C SCAMP4 Missense_Mutation p.W190C 0.12 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OQ-01 19 39200089 39200089 G A ACTN4 Missense_Mutation p.D236N 0.17 tolerated(0.07) probably_damaging(0.935) TCGA-GD-A3OQ-01 19 39516171 39516171 G C FBXO27 Missense_Mutation p.I244M 0.05 deleterious(0.04) possibly_damaging(0.867) TCGA-GD-A3OQ-01 19 45854898 45854898 G C ERCC2 Missense_Mutation p.Q758E 0.12 tolerated(0.27) benign(0.007) TCGA-GD-A3OQ-01 19 53770826 53770826 G A VN1R4 Silent p.S31S 0.07 TCGA-GD-A3OQ-01 1 11105485 11105485 C T MASP2 Missense_Mutation p.R175H 0.37 tolerated(0.1) benign(0.015) TCGA-GD-A3OQ-01 1 112269624 112269624 G A FAM212B Missense_Mutation p.S287L 0.10 tolerated(0.05) benign(0.178) TCGA-GD-A3OQ-01 1 115220970 115220970 G C AMPD1 Missense_Mutation p.S392C 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-GD-A3OQ-01 1 151134376 151134376 C G LYSMD1 Missense_Mutation p.E127D 0.11 tolerated(0.42) benign(0.08) TCGA-GD-A3OQ-01 1 152282758 152282758 G C FLG Nonsense_Mutation p.S1535* 0.11 TCGA-GD-A3OQ-01 1 156131202 156131202 C G SEMA4A Silent p.L292L 0.12 TCGA-GD-A3OQ-01 1 19491418 19491418 C T UBR4 Silent p.V1462V 0.16 TCGA-GD-A3OQ-01 1 223284277 223284277 G T TLR5 Missense_Mutation p.F699L 0.04 deleterious(0) probably_damaging(0.994) TCGA-GD-A3OQ-01 1 224318184 224318184 G C FBXO28 Missense_Mutation p.R93T 0.09 tolerated(0.14) possibly_damaging(0.652) TCGA-GD-A3OQ-01 1 237947659 237947659 C T RYR2 Missense_Mutation p.A4216V 0.39 benign(0.091) TCGA-GD-A3OQ-01 1 27057936 27057937 - C ARID1A Frame_Shift_Ins p.Y551Lfs*72 0.34 TCGA-GD-A3OQ-01 1 39801075 39801075 C G MACF1 Intron 0.09 TCGA-GD-A3OQ-01 1 41285143 41285143 C T KCNQ4 Missense_Mutation p.T278M 0.05 tolerated(0.16) probably_damaging(0.984) TCGA-GD-A3OQ-01 1 52740153 52740153 C G ZFYVE9 Missense_Mutation p.F881L 0.03 tolerated(0.31) benign(0.206) TCGA-GD-A3OQ-01 1 59041850 59041850 C T TACSTD2 3'UTR 0.12 TCGA-GD-A3OQ-01 1 6188917 6188917 G C CHD5 Silent p.L1200L 0.07 TCGA-GD-A3OQ-01 1 62614061 62614061 G C INADL Missense_Mutation p.E1793Q 0.26 deleterious_low_confidence(0) possibly_damaging(0.752) TCGA-GD-A3OQ-01 1 74954930 74954930 G A TNNI3K Missense_Mutation p.E828K 0.08 deleterious_low_confidence(0.04) benign(0.352) TCGA-GD-A3OQ-01 1 86173471 86173471 T C ZNHIT6 Missense_Mutation p.K166R 0.11 deleterious_low_confidence(0.01) benign(0.048) TCGA-GD-A3OQ-01 20 55929795 55929795 G A RAE1 Missense_Mutation p.D40N 0.10 deleterious(0) probably_damaging(0.984) TCGA-GD-A3OQ-01 20 60318751 60318751 C T CDH4 Missense_Mutation p.T101M 0.28 tolerated(0.31) benign(0.097) TCGA-GD-A3OQ-01 21 37408307 37408307 G C SETD4 3'UTR 0.07 TCGA-GD-A3OQ-01 21 45401024 45401024 G A AGPAT3 Missense_Mutation p.G333E 0.11 deleterious(0) probably_damaging(0.983) TCGA-GD-A3OQ-01 22 21800133 21800133 A G HIC2 Missense_Mutation p.S317G 0.26 tolerated(0.22) benign(0.04) TCGA-GD-A3OQ-01 22 32241198 32241198 G A DEPDC5 Missense_Mutation p.R990Q 0.47 tolerated(0.24) probably_damaging(0.957) TCGA-GD-A3OQ-01 22 41564853 41564853 G A EP300 Missense_Mutation p.C1385Y 0.13 probably_damaging(0.996) TCGA-GD-A3OQ-01 22 42042976 42042976 C T XRCC6 Missense_Mutation p.P284S 0.11 tolerated(0.49) benign(0.001) TCGA-GD-A3OQ-01 22 45927195 45927195 C A FBLN1 Missense_Mutation p.R179S 0.41 tolerated(0.21) possibly_damaging(0.726) TCGA-GD-A3OQ-01 2 100210557 100210557 C G AFF3 Missense_Mutation p.E547D 0.04 tolerated(0.6) benign(0.002) TCGA-GD-A3OQ-01 2 10923408 10923408 C G ATP6V1C2 3'UTR 0.09 TCGA-GD-A3OQ-01 2 160628465 160628465 G T LY75 Missense_Mutation p.S1840Y 0.33 deleterious(0) probably_damaging(0.992) TCGA-GD-A3OQ-01 2 166848014 166848014 C A SCN1A Missense_Mutation p.R1924L 0.30 deleterious(0) possibly_damaging(0.836) TCGA-GD-A3OQ-01 2 198265573 198265573 C T SF3B1 Missense_Mutation p.E862K 0.14 deleterious(0) probably_damaging(0.984) TCGA-GD-A3OQ-01 2 233710441 233710441 G A GIGYF2 Splice_Site p.X1123_splice 0.25 TCGA-GD-A3OQ-01 2 24521611 24521611 G C ITSN2 Missense_Mutation p.Q473E 0.10 tolerated(0.06) unknown(0) TCGA-GD-A3OQ-01 2 64778744 64778744 G C AFTPH Missense_Mutation p.D46H 0.43 deleterious(0) probably_damaging(0.979) TCGA-GD-A3OQ-01 3 122634684 122634684 C T SEMA5B Missense_Mutation p.R635H 0.41 deleterious(0.01) benign(0.073) TCGA-GD-A3OQ-01 3 131220433 131220433 T C MRPL3 Silent p.L73L 0.35 TCGA-GD-A3OQ-01 3 167254660 167254660 G A WDR49 Missense_Mutation p.T299M 0.34 deleterious(0) probably_damaging(1) TCGA-GD-A3OQ-01 3 48699002 48699002 C G CELSR3 Missense_Mutation p.E356Q 0.19 deleterious(0.03) probably_damaging(0.939) TCGA-GD-A3OQ-01 3 48955632 48955632 C T ARIH2OS 3'UTR 0.33 TCGA-GD-A3OQ-01 3 7456742 7456742 G A GRM7 Missense_Mutation p.E356K 0.25 tolerated(0.17) benign(0.389) TCGA-GD-A3OQ-01 4 151357947 151357947 G A LRBA Nonsense_Mutation p.Q2295* 0.22 TCGA-GD-A3OQ-01 4 54248502 54248502 G A FIP1L1 Silent p.P76P 0.10 TCGA-GD-A3OQ-01 4 54257217 54257217 G C FIP1L1 Missense_Mutation p.D183H 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-GD-A3OQ-01 4 76956259 76956259 C G CXCL11 Missense_Mutation p.E68Q 0.13 tolerated(0.46) benign(0.079) TCGA-GD-A3OQ-01 5 10981933 10981933 C T CTNND2 Silent p.L1123L 0.08 TCGA-GD-A3OQ-01 5 118485340 118485340 C T DMXL1 Missense_Mutation p.S1273F 0.09 tolerated(0.05) benign(0.008) TCGA-GD-A3OQ-01 5 140214244 140214244 C G PCDHA7 Silent p.R92R 0.12 TCGA-GD-A3OQ-01 5 140228356 140228356 C G PCDHA9 Silent p.R92R 0.56 TCGA-GD-A3OQ-01 5 140580672 140580672 C G PCDHB11 Missense_Mutation p.S442C 0.14 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-GD-A3OQ-01 5 157159883 157159883 G A THG1L Missense_Mutation p.E67K 0.07 tolerated(0.26) benign(0.034) TCGA-GD-A3OQ-01 5 485324 485324 G A SLC9A3 Missense_Mutation p.S233F 0.25 deleterious(0) probably_damaging(0.972) TCGA-GD-A3OQ-01 5 65310528 65310528 G A ERBB2IP Missense_Mutation p.E170K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-GD-A3OQ-01 5 6656219 6656219 G T SRD5A1 Missense_Mutation p.L163F 0.35 tolerated(0.21) benign(0.085) TCGA-GD-A3OQ-01 6 10586549 10586550 - T GCNT2 Intron 0.10 TCGA-GD-A3OQ-01 6 151779478 151779478 G A C6orf211 Missense_Mutation p.E55K 0.09 tolerated(0.31) possibly_damaging(0.471) TCGA-GD-A3OQ-01 6 160174530 160174530 T C WTAP Missense_Mutation p.L164P 0.31 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OQ-01 6 26158562 26158562 C G HIST1H2BD Missense_Mutation p.I55M 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.843) TCGA-GD-A3OQ-01 6 30672587 30672587 G C MDC1 Missense_Mutation p.S1458C 0.21 deleterious(0.04) possibly_damaging(0.781) TCGA-GD-A3OQ-01 6 33694647 33694647 G C IP6K3 Silent p.L150L 0.04 TCGA-GD-A3OQ-01 6 36652057 36652058 - G CDKN1A Frame_Shift_Ins p.D62* 0.45 TCGA-GD-A3OQ-01 6 39869784 39869784 G A DAAM2 Missense_Mutation p.E1060K 0.27 deleterious(0) probably_damaging(0.991) TCGA-GD-A3OQ-01 6 43400565 43400565 C T ABCC10 Missense_Mutation p.R283W 0.07 tolerated(0.3) possibly_damaging(0.614) TCGA-GD-A3OQ-01 6 46684211 46684211 G T PLA2G7 Missense_Mutation p.L96I 0.09 tolerated(0.13) benign(0.018) TCGA-GD-A3OQ-01 6 7229719 7229725 TCGGCCA - RREB1 Frame_Shift_Del p.A464Sfs*9 0.79 TCGA-GD-A3OQ-01 7 103185777 103185777 C G RELN Missense_Mutation p.R2106T 0.23 deleterious(0) possibly_damaging(0.473) TCGA-GD-A3OQ-01 7 148768420 148768420 G A ZNF786 Nonsense_Mutation p.Q482* 0.12 TCGA-GD-A3OQ-01 7 27285709 27285709 G A EVX1 Missense_Mutation p.A297T 0.18 tolerated(0.07) possibly_damaging(0.808) TCGA-GD-A3OQ-01 7 94163033 94163033 C T CASD1 Nonsense_Mutation p.Q183* 0.21 TCGA-GD-A3OQ-01 8 17422584 17422584 C T SLC7A2 Nonsense_Mutation p.Q676* 0.21 TCGA-GD-A3OQ-01 8 27145409 27145409 G A TRIM35 Silent p.G380G 0.34 TCGA-GD-A3OQ-01 8 36766906 36766906 G A KCNU1 Silent p.P728P 0.04 TCGA-GD-A3OQ-01 9 117002529 117002529 C T COL27A1 Silent p.G919G 0.72 TCGA-GD-A3OQ-01 9 32543241 32543241 A C TOPORS Missense_Mutation p.S428A 0.72 tolerated(0.19) benign(0.298) TCGA-GD-A3OQ-01 X 102334549 102334549 G C NXF3 Missense_Mutation p.F394L 0.17 tolerated(0.18) benign(0.003) TCGA-GD-A3OQ-01 X 108628509 108628509 G A GUCY2F Missense_Mutation p.P987S 0.74 deleterious(0.03) probably_damaging(0.957) TCGA-GD-A3OQ-01 X 14882865 14882865 G A FANCB Silent p.L256L 0.07 TCGA-GD-A3OS-01 10 103560119 103560119 A T MGEA5 Missense_Mutation p.L359I 0.30 deleterious(0.02) possibly_damaging(0.87) TCGA-GD-A3OS-01 10 128925983 128925983 C T DOCK1 Silent p.T913T 0.06 TCGA-GD-A3OS-01 10 14891755 14891755 G A HSPA14 Missense_Mutation p.D138N 0.14 tolerated(0.31) benign(0.036) TCGA-GD-A3OS-01 10 74690368 74690368 C T OIT3 Silent p.V480V 0.32 TCGA-GD-A3OS-01 11 44146519 44146519 C G EXT2 Nonsense_Mutation p.Y341* 0.30 TCGA-GD-A3OS-01 11 51516060 51516060 C A OR4C46 Missense_Mutation p.A260E 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.598) TCGA-GD-A3OS-01 11 64029989 64029989 G A PLCB3 Missense_Mutation p.E717K 0.30 deleterious(0.05) possibly_damaging(0.814) TCGA-GD-A3OS-01 12 109194663 109194664 AT - SSH1 Frame_Shift_Del p.N347Ifs*10 0.19 TCGA-GD-A3OS-01 12 124104079 124104079 C T DDX55 Silent p.D478D 0.24 TCGA-GD-A3OS-01 12 20859006 20859006 T C SLCO1C1 Missense_Mutation p.F132S 0.39 deleterious(0) possibly_damaging(0.756) TCGA-GD-A3OS-01 12 39730925 39730925 C A KIF21A Missense_Mutation p.Q797H 0.71 deleterious(0) probably_damaging(0.947) TCGA-GD-A3OS-01 12 46318787 46318787 C T SCAF11 Silent p.P1210P 0.26 TCGA-GD-A3OS-01 12 69652373 69652373 G C CPSF6 Missense_Mutation p.G233A 0.40 tolerated(0.92) unknown(0) TCGA-GD-A3OS-01 13 58207677 58207677 G T PCDH17 Missense_Mutation p.A333S 0.30 deleterious(0.05) possibly_damaging(0.648) TCGA-GD-A3OS-01 13 92345804 92345804 A T GPC5 Missense_Mutation p.N230I 0.79 deleterious(0) probably_damaging(0.995) TCGA-GD-A3OS-01 14 33291375 33291375 C T AKAP6 Silent p.D1452D 0.54 TCGA-GD-A3OS-01 14 59113073 59113073 G A DACT1 Missense_Mutation p.V578I 0.26 tolerated(1) benign(0.004) TCGA-GD-A3OS-01 15 33091032 33091032 C T FMN1 Missense_Mutation p.R1145Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OS-01 15 75221462 75221462 C T COX5A Missense_Mutation p.R71H 0.40 deleterious(0.03) benign(0.33) TCGA-GD-A3OS-01 16 1706030 1706030 G T CRAMP1L Silent p.V424V 0.61 TCGA-GD-A3OS-01 16 31150574 31150574 G A PRSS36 Missense_Mutation p.S818F 0.14 tolerated(0.73) benign(0.002) TCGA-GD-A3OS-01 16 66948291 66948291 A G CDH16 Missense_Mutation p.L203P 0.75 tolerated(0.19) benign(0.033) TCGA-GD-A3OS-01 17 35300098 35300098 G A LHX1 Silent p.P297P 0.46 TCGA-GD-A3OS-01 17 7193038 7193038 G A YBX2 Silent p.F285F 0.67 TCGA-GD-A3OS-01 17 73055695 73055695 G T KCTD2 Nonsense_Mutation p.E211* 0.42 TCGA-GD-A3OS-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.73 deleterious(0) probably_damaging(1) TCGA-GD-A3OS-01 17 78444649 78444649 G T NPTX1 Silent p.T421T 0.65 TCGA-GD-A3OS-01 18 39584376 39584376 G T PIK3C3 Missense_Mutation p.Q347H 0.57 deleterious(0) probably_damaging(0.968) TCGA-GD-A3OS-01 19 21365524 21365524 G C ZNF431 Missense_Mutation p.E140Q 0.27 deleterious(0.05) possibly_damaging(0.673) TCGA-GD-A3OS-01 19 3151744 3151744 C T GNA15 Silent p.Y175Y 0.35 TCGA-GD-A3OS-01 19 38189554 38189554 G C ZNF607 Missense_Mutation p.T493S 0.21 tolerated(0.15) benign(0.118) TCGA-GD-A3OS-01 19 40580998 40580998 C T ZNF780A Missense_Mutation p.E452K 0.20 deleterious(0.04) benign(0.003) TCGA-GD-A3OS-01 19 51301486 51301486 C T C19orf48 Missense_Mutation p.D74N 0.14 deleterious_low_confidence(0) unknown(0) TCGA-GD-A3OS-01 19 51537941 51537941 C G KLK12 Intron 0.69 TCGA-GD-A3OS-01 19 52909178 52909178 G A ZNF528 Missense_Mutation p.D12N 0.14 deleterious(0) probably_damaging(1) TCGA-GD-A3OS-01 19 52942185 52942185 A G ZNF534 Missense_Mutation p.E504G 0.15 deleterious(0.03) probably_damaging(0.965) TCGA-GD-A3OS-01 19 56243996 56243996 C G NLRP9 Missense_Mutation p.E401Q 0.13 deleterious(0.01) possibly_damaging(0.886) TCGA-GD-A3OS-01 19 57133733 57133733 G A ZNF71 Missense_Mutation p.G360S 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-GD-A3OS-01 19 571550 571550 G A BSG 5'Flank 0.25 TCGA-GD-A3OS-01 19 8563950 8563950 C T PRAM1 Missense_Mutation p.E248K 0.38 tolerated(0.06) probably_damaging(0.977) TCGA-GD-A3OS-01 1 101490988 101490988 G A DPH5 Silent p.L4L 0.25 TCGA-GD-A3OS-01 1 145601614 145601614 G A POLR3C Silent p.S264S 0.14 TCGA-GD-A3OS-01 1 150444932 150444932 C T RPRD2 Missense_Mutation p.R1170W 0.20 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-GD-A3OS-01 1 158650498 158650498 C G SPTA1 Missense_Mutation p.E185Q 0.36 deleterious(0) probably_damaging(0.954) TCGA-GD-A3OS-01 1 167992243 167992243 G C DCAF6 Missense_Mutation p.V523L 0.17 deleterious_low_confidence(0.05) probably_damaging(0.994) TCGA-GD-A3OS-01 1 169923248 169923248 C T KIFAP3 Missense_Mutation p.G726E 0.23 tolerated(0.08) possibly_damaging(0.743) TCGA-GD-A3OS-01 1 196887480 196887480 C G CFHR4 Missense_Mutation p.L560V 0.12 tolerated(0.21) possibly_damaging(0.535) TCGA-GD-A3OS-01 1 196918666 196918666 C T CFHR2 Missense_Mutation p.T47I 0.12 tolerated(1) benign(0.027) TCGA-GD-A3OS-01 1 203139428 203139434 GGATGTG - MYBPH Frame_Shift_Del p.H360Rfs*55 0.15 TCGA-GD-A3OS-01 1 212553312 212553312 C T TMEM206 Missense_Mutation p.R249H 0.19 tolerated(0.2) benign(0.04) TCGA-GD-A3OS-01 1 22838486 22838486 A T ZBTB40 Missense_Mutation p.T774S 0.50 deleterious(0.02) benign(0.003) TCGA-GD-A3OS-01 1 235715501 235715501 C T GNG4 Missense_Mutation p.E46K 0.55 tolerated(0.61) benign(0.053) TCGA-GD-A3OS-01 1 241798859 241798859 T G CHML Missense_Mutation p.E70D 0.23 tolerated(0.27) benign(0.02) TCGA-GD-A3OS-01 1 248023982 248023982 G A TRIM58 Missense_Mutation p.A162T 0.15 tolerated(0.25) benign(0.005) TCGA-GD-A3OS-01 1 248737333 248737333 G C OR2T34 Silent p.A242A 0.14 TCGA-GD-A3OS-01 1 36886081 36886081 C G OSCP1 Missense_Mutation p.E319Q 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-GD-A3OS-01 1 76877711 76877711 G A ST6GALNAC3 Missense_Mutation p.D78N 0.48 benign(0.015) TCGA-GD-A3OS-01 20 17339006 17339006 G A PCSK2 Missense_Mutation p.R106Q 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-GD-A3OS-01 21 28302365 28302365 C T ADAMTS5 Missense_Mutation p.E689K 0.27 tolerated(0.55) benign(0.092) TCGA-GD-A3OS-01 22 19951164 19951164 C T COMT Missense_Mutation p.S122L 0.45 deleterious(0) probably_damaging(0.99) TCGA-GD-A3OS-01 22 30415660 30415660 G A MTMR3 Missense_Mutation p.R671K 0.58 tolerated(0.55) benign(0.001) TCGA-GD-A3OS-01 22 37769638 37769638 T A ELFN2 Missense_Mutation p.D646V 0.33 deleterious(0) probably_damaging(0.918) TCGA-GD-A3OS-01 2 112541911 112541911 G T ANAPC1 Missense_Mutation p.L1662I 0.13 tolerated(0.18) benign(0.242) TCGA-GD-A3OS-01 2 119752005 119752005 C T MARCO Missense_Mutation p.T491M 0.21 deleterious(0.03) unknown(0) TCGA-GD-A3OS-01 2 179404371 179404371 G A TTN Silent p.D32807D 0.41 TCGA-GD-A3OS-01 2 179528611 179528611 T G TTN Missense_Mutation p.E12128A 0.19 TCGA-GD-A3OS-01 2 207169716 207169716 T C ZDBF2 Missense_Mutation p.I155T 0.58 deleterious(0.04) benign(0.152) TCGA-GD-A3OS-01 2 32640936 32640936 C G BIRC6 Silent p.L859L 0.44 TCGA-GD-A3OS-01 3 111719695 111719695 C T TAGLN3 Missense_Mutation p.A86V 0.20 tolerated(0.28) benign(0.033) TCGA-GD-A3OS-01 3 113627845 113627845 A C GRAMD1C Missense_Mutation p.K277T 0.79 tolerated(0.18) benign(0.193) TCGA-GD-A3OS-01 3 119361269 119361269 C G POPDC2 3'UTR 0.76 TCGA-GD-A3OS-01 3 122354758 122354758 C A PARP15 Nonsense_Mutation p.Y616* 0.21 TCGA-GD-A3OS-01 3 12475606 12475606 C T PPARG Missense_Mutation p.H494Y 0.63 deleterious(0) probably_damaging(0.983) TCGA-GD-A3OS-01 3 134278206 134278206 A G CEP63 Missense_Mutation p.N630D 0.25 tolerated(0.05) benign(0.058) TCGA-GD-A3OS-01 3 164697153 164697153 T A SI Silent p.S1827S 0.17 TCGA-GD-A3OS-01 3 52326880 52326880 G T GLYCTK Missense_Mutation p.W437L 0.56 tolerated(0.65) benign(0) TCGA-GD-A3OS-01 3 9798767 9798767 G A OGG1 Intron 0.19 TCGA-GD-A3OS-01 3 98188871 98188871 G T OR5K1 Missense_Mutation p.A151S 0.34 tolerated(0.09) possibly_damaging(0.822) TCGA-GD-A3OS-01 4 10079467 10079467 G A WDR1 Silent p.T493T 0.33 TCGA-GD-A3OS-01 4 30726012 30726012 C T PCDH7 Missense_Mutation p.P990S 0.30 deleterious(0) probably_damaging(0.987) TCGA-GD-A3OS-01 4 82058586 82058586 G T PRKG2 Missense_Mutation p.A532D 0.26 deleterious(0) probably_damaging(0.987) TCGA-GD-A3OS-01 5 110784840 110784840 C G CAMK4 Silent p.L188L 0.21 TCGA-GD-A3OS-01 5 118969677 118969677 C A FAM170A Missense_Mutation p.D78E 0.13 deleterious(0.04) benign(0.117) TCGA-GD-A3OS-01 5 130834176 130834176 T C RAPGEF6 Missense_Mutation p.K460R 0.74 tolerated(0.14) probably_damaging(0.999) TCGA-GD-A3OS-01 5 140750610 140750610 G T PCDHGB3 Missense_Mutation p.G217W 0.28 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OS-01 5 149449851 149449851 T G CSF1R Missense_Mutation p.S405R 0.60 tolerated(0.54) benign(0.007) TCGA-GD-A3OS-01 5 150489362 150489362 G A ANXA6 Missense_Mutation p.R546C 0.21 tolerated(0.08) probably_damaging(0.968) TCGA-GD-A3OS-01 5 71492471 71492471 G A MAP1B Missense_Mutation p.E1097K 0.35 probably_damaging(0.991) TCGA-GD-A3OS-01 6 12120592 12120592 C T HIVEP1 Silent p.S188S 0.41 TCGA-GD-A3OS-01 6 136582545 136582545 C - BCLAF1 Frame_Shift_Del p.G872Afs*75 0.20 TCGA-GD-A3OS-01 6 142397093 142397093 G A NMBR Missense_Mutation p.R289W 0.45 deleterious(0) probably_damaging(1) TCGA-GD-A3OS-01 6 147648378 147648378 C T STXBP5 Silent p.P682P 0.54 TCGA-GD-A3OS-01 6 25551263 25551264 - A LRRC16A Frame_Shift_Ins p.N820Kfs*10 0.24 TCGA-GD-A3OS-01 6 4133898 4133898 C T ECI2 Missense_Mutation p.R33K 0.59 tolerated(0.99) benign(0.001) TCGA-GD-A3OS-01 6 45917028 45917028 G T CLIC5 Silent p.I247I 0.28 TCGA-GD-A3OS-01 7 120387914 120387914 A G KCND2 3'UTR 0.19 TCGA-GD-A3OS-01 7 133314839 133314839 T C EXOC4 Missense_Mutation p.F487L 0.61 tolerated(0.72) benign(0.01) TCGA-GD-A3OS-01 7 147869367 147869367 G A CNTNAP2 Missense_Mutation p.C936Y 0.10 deleterious(0) probably_damaging(1) TCGA-GD-A3OS-01 7 76140331 76140331 C T UPK3B Missense_Mutation p.A121V 0.18 tolerated_low_confidence(0.2) benign(0.047) TCGA-GD-A3OS-01 7 8110599 8110599 C A GLCCI1 Silent p.R339R 0.25 TCGA-GD-A3OS-01 7 87476434 87476434 C A SLC25A40 Missense_Mutation p.G154V 0.52 tolerated(0.54) possibly_damaging(0.532) TCGA-GD-A3OS-01 7 97862830 97862830 C G TECPR1 Silent p.P525P 0.29 TCGA-GD-A3OS-01 7 97922840 97922840 A G BAIAP2L1 Missense_Mutation p.I510T 0.63 deleterious(0) possibly_damaging(0.848) TCGA-GD-A3OS-01 8 108972969 108972969 A G RSPO2 Silent p.H120H 0.39 TCGA-GD-A3OS-01 8 118159254 118159254 C A SLC30A8 Missense_Mutation p.L45M 0.29 tolerated(0.09) benign(0.352) TCGA-GD-A3OS-01 8 145057980 145057980 C T PARP10 Splice_Site p.X593_splice 0.20 TCGA-GD-A3OS-01 8 22412401 22412401 C T SORBS3 Missense_Mutation p.S43F 0.40 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OS-01 8 59494365 59494365 A G SDCBP 3'UTR 0.42 TCGA-GD-A3OS-01 8 77766952 77766952 G A ZFHX4 Missense_Mutation p.G2599S 0.28 probably_damaging(0.997) TCGA-GD-A3OS-01 8 99468111 99468111 C G STK3 Missense_Mutation p.D507H 0.43 deleterious(0) probably_damaging(0.979) TCGA-GD-A3OS-01 9 133729585 133729585 T G ABL1 Missense_Mutation p.F91V 0.04 deleterious(0) probably_damaging(0.999) TCGA-GD-A3OS-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.81 TCGA-GD-A3OS-01 9 88937354 88937354 C A ZCCHC6 Missense_Mutation p.G972C 0.28 deleterious(0) probably_damaging(1) TCGA-GD-A3OS-01 9 90262309 90262309 G T DAPK1 Silent p.V440V 0.25 TCGA-GD-A3OS-01 9 91926143 91926143 C T CKS2 5'UTR 0.24 TCGA-GD-A3OS-01 X 103359015 103359015 C T ZCCHC18 Silent p.V71V 0.76 TCGA-GD-A6C6-01 10 105778008 105778008 G C SLK Missense_Mutation p.E990Q 0.93 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 10 115804453 115804453 C T ADRB1 Silent p.L188L 0.57 TCGA-GD-A6C6-01 10 12123489 12123489 G C DHTKD1 Missense_Mutation p.R58T 0.71 deleterious(0.02) possibly_damaging(0.665) TCGA-GD-A6C6-01 10 12139833 12139833 G A DHTKD1 Silent p.L503L 0.50 TCGA-GD-A6C6-01 10 14894370 14894370 A C HSPA14 Missense_Mutation p.N192H 0.25 tolerated(0.89) benign(0.022) TCGA-GD-A6C6-01 10 16878250 16878250 G A CUBN Silent p.F3388F 0.06 TCGA-GD-A6C6-01 10 16916384 16916384 C T CUBN Silent p.V3075V 0.17 TCGA-GD-A6C6-01 10 17026271 17026271 C T CUBN Missense_Mutation p.G1453E 0.25 deleterious(0) probably_damaging(0.99) TCGA-GD-A6C6-01 10 17083185 17083185 A G CUBN Silent p.Y1288Y 0.22 TCGA-GD-A6C6-01 10 24889777 24889777 C G ARHGAP21 Missense_Mutation p.R977T 0.72 deleterious(0) probably_damaging(0.925) TCGA-GD-A6C6-01 10 32308790 32308790 G C KIF5B Missense_Mutation p.L768V 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-GD-A6C6-01 10 5415932 5415932 C G UCN3 Missense_Mutation p.I83M 0.17 tolerated(0.11) benign(0.001) TCGA-GD-A6C6-01 10 55566328 55566329 - A PCDH15 3'UTR 0.30 TCGA-GD-A6C6-01 10 55996677 55996677 G A PCDH15 Silent p.P297P 0.90 TCGA-GD-A6C6-01 10 5790543 5790543 C T FAM208B Missense_Mutation p.T1720I 0.44 tolerated(0.13) benign(0.038) TCGA-GD-A6C6-01 10 64913327 64913327 C G NRBF2 Missense_Mutation p.I71M 0.56 deleterious(0.02) benign(0.423) TCGA-GD-A6C6-01 10 70231669 70231669 G T DNA2 Silent p.R71R 0.88 TCGA-GD-A6C6-01 10 74114687 74114687 G A DNAJB12 Missense_Mutation p.S24F 0.98 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-GD-A6C6-01 10 8006853 8006853 C T TAF3 Silent p.S460S 0.16 TCGA-GD-A6C6-01 10 93773532 93773532 G T BTAF1 Missense_Mutation p.D1474Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-GD-A6C6-01 11 1018724 1018724 C T MUC6 Silent p.T1359T 0.89 TCGA-GD-A6C6-01 11 108204612 108204612 G A ATM Splice_Site p.X2643_splice 0.70 TCGA-GD-A6C6-01 11 116729357 116729357 G C SIK3 Missense_Mutation p.L836V 0.47 tolerated_low_confidence(0.05) probably_damaging(0.99) TCGA-GD-A6C6-01 11 120351137 120351137 C T ARHGEF12 Missense_Mutation p.S1412L 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GD-A6C6-01 11 1432587 1432587 C G BRSK2 5'UTR 0.40 TCGA-GD-A6C6-01 11 16822593 16822593 C G PLEKHA7 Silent p.L779L 0.39 TCGA-GD-A6C6-01 11 31327297 31327297 T A DCDC1 Missense_Mutation p.N207Y 0.50 deleterious(0.01) possibly_damaging(0.514) TCGA-GD-A6C6-01 11 4616015 4616015 G A OR52I1 Silent p.V249V 0.87 TCGA-GD-A6C6-01 11 46782330 46782330 G A CKAP5 Missense_Mutation p.S1409F 0.67 deleterious(0) probably_damaging(0.961) TCGA-GD-A6C6-01 11 49204743 49204743 G T FOLH1 Missense_Mutation p.P293H 0.16 deleterious(0) probably_damaging(0.978) TCGA-GD-A6C6-01 11 55890553 55890553 G A OR8H3 Silent p.Q235Q 0.27 TCGA-GD-A6C6-01 11 62285470 62285470 G C AHNAK Silent p.G5473G 0.43 TCGA-GD-A6C6-01 11 64884163 64884163 C G ZNHIT2 Silent p.R321R 0.21 TCGA-GD-A6C6-01 11 64884261 64884261 C G ZNHIT2 Missense_Mutation p.E289Q 0.28 tolerated(0.16) probably_damaging(0.989) TCGA-GD-A6C6-01 11 6644138 6644138 G C DCHS1 Silent p.T2923T 0.33 TCGA-GD-A6C6-01 11 85437217 85437217 C A SYTL2 Missense_Mutation p.V95L 0.28 deleterious_low_confidence(0.01) benign(0.337) TCGA-GD-A6C6-01 11 87020654 87020654 C G TMEM135 Missense_Mutation p.F292L 0.34 tolerated(0.79) benign(0.002) TCGA-GD-A6C6-01 11 94230076 94230076 G T ANKRD49 Missense_Mutation p.D73Y 0.41 deleterious(0.01) benign(0.27) TCGA-GD-A6C6-01 11 94352998 94352998 A T PIWIL4 Silent p.V747V 0.49 TCGA-GD-A6C6-01 12 110206721 110206721 C T FAM222A Silent p.L329L 0.54 TCGA-GD-A6C6-01 12 113614891 113614891 C T DDX54 Missense_Mutation p.D208N 0.32 tolerated(0.1) benign(0.274) TCGA-GD-A6C6-01 12 123011473 123011473 C G RSRC2 5'UTR 0.58 TCGA-GD-A6C6-01 12 123102928 123102928 G A KNTC1 Silent p.Q2023Q 0.23 TCGA-GD-A6C6-01 12 125449488 125449488 C T DHX37 Silent p.E600E 0.26 TCGA-GD-A6C6-01 12 125450271 125450271 C G DHX37 Missense_Mutation p.E560Q 0.31 tolerated(0.15) possibly_damaging(0.856) TCGA-GD-A6C6-01 12 29496108 29496108 G C ERGIC2 Missense_Mutation p.F311L 0.34 tolerated(1) benign(0.003) TCGA-GD-A6C6-01 12 31586146 31586146 C T DENND5B Silent p.R683R 0.22 TCGA-GD-A6C6-01 12 31944704 31944704 C T H3F3C Missense_Mutation p.E133K 0.27 deleterious_low_confidence(0.02) benign(0.222) TCGA-GD-A6C6-01 12 32135289 32135289 G C KIAA1551 Missense_Mutation p.R467T 0.33 tolerated(0.15) benign(0.046) TCGA-GD-A6C6-01 12 45567191 45567191 C T PLEKHA8P1 RNA 0.32 TCGA-GD-A6C6-01 12 49433650 49433650 G A KMT2D Nonsense_Mutation p.R2635* 0.24 TCGA-GD-A6C6-01 12 51639913 51639913 G C DAZAP2 3'Flank 0.23 TCGA-GD-A6C6-01 12 51879664 51879664 C G SLC4A8 Missense_Mutation p.Q756E 0.28 tolerated(1) benign(0.128) TCGA-GD-A6C6-01 12 56600230 56600230 C G RNF41 3'UTR 0.32 TCGA-GD-A6C6-01 12 56600239 56600239 C T RNF41 Missense_Mutation p.E316K 0.33 deleterious(0.01) benign(0.083) TCGA-GD-A6C6-01 12 56600396 56600396 C G RNF41 Missense_Mutation p.E263D 0.27 tolerated(0.1) probably_damaging(0.937) TCGA-GD-A6C6-01 12 57390079 57390079 C T GPR182 Silent p.I362I 0.28 TCGA-GD-A6C6-01 12 58124285 58124285 G A AGAP2 Silent p.L807L 0.30 TCGA-GD-A6C6-01 12 6646380 6646380 C G GAPDH Missense_Mutation p.I147M 0.37 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-GD-A6C6-01 12 69326600 69326600 G A CPM Silent p.L6L 0.28 TCGA-GD-A6C6-01 12 6939551 6939551 G A LEPREL2 Missense_Mutation p.R228H 0.29 tolerated(0.11) benign(0.007) TCGA-GD-A6C6-01 12 70713100 70713100 C T CNOT2 Missense_Mutation p.S65L 0.24 deleterious_low_confidence(0) benign(0.086) TCGA-GD-A6C6-01 12 72667332 72667332 G C TRHDE Missense_Mutation p.E258D 0.57 tolerated(0.56) benign(0.415) TCGA-GD-A6C6-01 12 76741958 76741958 C G BBS10 Missense_Mutation p.E61Q 0.36 deleterious(0.04) benign(0.047) TCGA-GD-A6C6-01 12 85277580 85277580 G C SLC6A15 Intron 0.30 TCGA-GD-A6C6-01 12 95604944 95604944 G C FGD6 Missense_Mutation p.S39C 0.26 deleterious(0.02) possibly_damaging(0.838) TCGA-GD-A6C6-01 13 20426127 20426127 G C ZMYM5 Missense_Mutation p.S65C 0.90 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-GD-A6C6-01 13 24895916 24895916 G A C1QTNF9 3'UTR 0.45 TCGA-GD-A6C6-01 13 25914233 25914233 G A NUPL1 Silent p.L587L 0.59 TCGA-GD-A6C6-01 13 29601027 29601027 A C MTUS2 Missense_Mutation p.K741T 0.34 deleterious(0.02) benign(0.357) TCGA-GD-A6C6-01 13 31549015 31549015 C G TEX26 Missense_Mutation p.H281D 0.45 deleterious(0.01) possibly_damaging(0.88) TCGA-GD-A6C6-01 13 73409389 73409389 A G PIBF1 Missense_Mutation p.Y369C 0.89 tolerated(0.06) probably_damaging(0.998) TCGA-GD-A6C6-01 13 79940945 79940945 C A RBM26 Missense_Mutation p.V320L 0.81 tolerated(0.15) probably_damaging(0.935) TCGA-GD-A6C6-01 13 95735500 95735500 C T ABCC4 Silent p.V860V 0.37 TCGA-GD-A6C6-01 13 95899345 95899345 A G ABCC4 Missense_Mutation p.W64R 0.10 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 14 102792872 102792872 C G ZNF839 Missense_Mutation p.S280C 0.46 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 14 107048851 107048851 G A IGHV3-53 Missense_Mutation p.R57C 0.63 deleterious_low_confidence(0.03) benign(0.109) TCGA-GD-A6C6-01 14 21967206 21967206 C T METTL3 Missense_Mutation p.E532K 0.20 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 14 21967728 21967728 C T METTL3 Missense_Mutation p.E454K 0.65 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 14 23530519 23530519 T C ACIN1 Missense_Mutation p.S1196G 0.63 possibly_damaging(0.673) TCGA-GD-A6C6-01 14 45642407 45642407 C T FANCM Silent p.H770H 0.19 TCGA-GD-A6C6-01 14 50050348 50050348 A T RPS29 Intron 0.13 TCGA-GD-A6C6-01 14 50625365 50625365 C T SOS2 Splice_Site p.X618_splice 0.38 TCGA-GD-A6C6-01 14 53619512 53619512 T C DDHD1 Missense_Mutation p.Y102C 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GD-A6C6-01 14 58701183 58701183 C T ACTR10 Missense_Mutation p.L390F 0.54 deleterious(0.02) probably_damaging(0.989) TCGA-GD-A6C6-01 14 64194305 64194305 G C SGPP1 Missense_Mutation p.L120V 0.36 tolerated(0.14) benign(0.004) TCGA-GD-A6C6-01 14 66975155 66975155 G C GPHN 5'UTR 0.27 TCGA-GD-A6C6-01 14 68265100 68265100 C T ZFYVE26 Missense_Mutation p.E627K 0.35 tolerated(0.08) possibly_damaging(0.736) TCGA-GD-A6C6-01 14 70713661 70713661 G C ADAM21P1 RNA 0.57 TCGA-GD-A6C6-01 14 76045452 76045452 C G FLVCR2 Missense_Mutation p.S46C 0.68 deleterious(0.01) possibly_damaging(0.554) TCGA-GD-A6C6-01 14 80993245 80993245 C G CEP128 Missense_Mutation p.D1014H 0.24 deleterious(0) probably_damaging(0.94) TCGA-GD-A6C6-01 14 90398919 90398919 T C EFCAB11 Silent p.Q90Q 0.72 TCGA-GD-A6C6-01 14 91701130 91701130 G T GPR68 Missense_Mutation p.H89N 0.81 tolerated(0.07) benign(0.063) TCGA-GD-A6C6-01 15 20496601 20496601 C G CHEK2P2 RNA 0.16 TCGA-GD-A6C6-01 15 30008847 30008847 C T TJP1 Silent p.Q1390Q 0.08 TCGA-GD-A6C6-01 15 40751684 40751684 G T BAHD1 Nonsense_Mutation p.E341* 0.89 TCGA-GD-A6C6-01 15 49288682 49288682 C T SECISBP2L Silent p.K835K 0.54 TCGA-GD-A6C6-01 15 64446753 64446753 C T SNX22 3'UTR 0.88 TCGA-GD-A6C6-01 15 68624687 68624687 C A ITGA11 Nonsense_Mutation p.E519* 0.50 TCGA-GD-A6C6-01 15 75761208 75761208 C G PTPN9 Missense_Mutation p.E562Q 0.38 deleterious(0.01) probably_damaging(0.918) TCGA-GD-A6C6-01 16 11855345 11855350 TCGCAC - ZC3H7A In_Frame_Del p.R744_M746delinsL 0.48 TCGA-GD-A6C6-01 16 20386150 20386150 G C PDILT Missense_Mutation p.F225L 0.89 deleterious(0.04) probably_damaging(0.999) TCGA-GD-A6C6-01 16 20554318 20554318 G C ACSM2B Missense_Mutation p.S476W 0.38 deleterious(0.01) probably_damaging(0.936) TCGA-GD-A6C6-01 16 20696521 20696521 G C ACSM1 Missense_Mutation p.R133G 0.90 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 16 23641648 23641648 G C PALB2 Missense_Mutation p.I609M 0.84 tolerated(0.07) benign(0.042) TCGA-GD-A6C6-01 16 28883102 28883102 G A SH2B1 Silent p.G437G 0.93 TCGA-GD-A6C6-01 16 29999360 29999360 C T TAOK2 3'UTR 1.00 TCGA-GD-A6C6-01 16 30103957 30103957 C T YPEL3 3'UTR 0.45 TCGA-GD-A6C6-01 16 30594115 30594115 G C ZNF785 Silent p.L328L 0.54 TCGA-GD-A6C6-01 16 4924865 4924865 G A UBN1 Silent p.T818T 0.40 TCGA-GD-A6C6-01 16 66918698 66918698 G C PDP2 Missense_Mutation p.E171Q 0.48 tolerated(0.41) benign(0.103) TCGA-GD-A6C6-01 16 67694229 67694229 G T ACD Silent p.L51L 0.40 TCGA-GD-A6C6-01 16 68373735 68373735 G C PRMT7 Missense_Mutation p.S264T 0.89 tolerated(0.46) benign(0.001) TCGA-GD-A6C6-01 16 74419268 74419268 C T NPIPB15 Missense_Mutation p.S93F 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GD-A6C6-01 16 8728937 8728937 G A METTL22 Splice_Site p.X185_splice 0.93 TCGA-GD-A6C6-01 16 8953184 8953184 A G CARHSP1 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) benign(0.227) TCGA-GD-A6C6-01 17 10357989 10357989 T G MYH4 Missense_Mutation p.E858D 0.36 deleterious(0.05) probably_damaging(0.992) TCGA-GD-A6C6-01 17 17088292 17088293 - TTA MPRIP 3'UTR 0.57 TCGA-GD-A6C6-01 17 28525463 28525463 C T SLC6A4 3'UTR 0.59 TCGA-GD-A6C6-01 17 29848333 29848333 C T RAB11FIP4 Missense_Mutation p.T238I 0.36 deleterious(0.04) benign(0.051) TCGA-GD-A6C6-01 17 35990197 35990197 C T DDX52 Missense_Mutation p.E204K 0.64 deleterious(0.04) probably_damaging(0.969) TCGA-GD-A6C6-01 17 40705797 40705797 G A HSD17B1 Intron 0.17 TCGA-GD-A6C6-01 17 43316384 43316384 C T FMNL1 Silent p.V344V 0.23 TCGA-GD-A6C6-01 17 4448566 4448566 C T MYBBP1A Silent p.L716L 0.89 TCGA-GD-A6C6-01 17 47076504 47076504 T C IGF2BP1 Missense_Mutation p.I70T 0.69 deleterious(0) benign(0.071) TCGA-GD-A6C6-01 17 47869281 47869281 G C KAT7 Missense_Mutation p.D17H 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GD-A6C6-01 17 68128240 68128240 C T KCNJ16 Silent p.Y4Y 0.40 TCGA-GD-A6C6-01 17 7214768 7214768 G C EIF5A Missense_Mutation p.E154Q 0.89 tolerated(0.49) benign(0.019) TCGA-GD-A6C6-01 17 7578508 7578508 C T TP53 Missense_Mutation p.C141Y 0.89 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 17 78092119 78092119 G A GAA Missense_Mutation p.R870Q 0.45 tolerated(0.21) benign(0.007) TCGA-GD-A6C6-01 17 79205923 79205923 G C ENTHD2 Intron 0.50 TCGA-GD-A6C6-01 17 80763785 80763785 C T TBCD Silent p.L329L 0.47 TCGA-GD-A6C6-01 17 8402695 8402695 C G MYH10 Missense_Mutation p.E1282Q 0.35 probably_damaging(0.997) TCGA-GD-A6C6-01 18 2601414 2601414 T G NDC80 Missense_Mutation p.L465R 0.16 deleterious(0.01) benign(0.012) TCGA-GD-A6C6-01 18 61379922 61379922 C G SERPINB11 Missense_Mutation p.H118D 0.36 tolerated(0.2) benign(0.139) TCGA-GD-A6C6-01 18 61471682 61471682 C G SERPINB7 Nonsense_Mutation p.S319* 0.31 TCGA-GD-A6C6-01 18 72346209 72346209 C G ZNF407 Silent p.L1078L 0.86 TCGA-GD-A6C6-01 19 10406170 10406170 G A ICAM5 Silent p.S793S 0.60 TCGA-GD-A6C6-01 19 1046287 1046287 G A ABCA7 Missense_Mutation p.G502S 0.31 deleterious(0.02) possibly_damaging(0.614) TCGA-GD-A6C6-01 19 10822943 10822943 G A QTRT1 Silent p.P251P 0.26 TCGA-GD-A6C6-01 19 13227233 13227233 C G TRMT1 5'UTR 0.39 TCGA-GD-A6C6-01 19 13409749 13409749 C G CACNA1A Missense_Mutation p.E900Q 0.67 possibly_damaging(0.501) TCGA-GD-A6C6-01 19 15376405 15376405 C T BRD4 Silent p.S203S 0.35 TCGA-GD-A6C6-01 19 15547730 15547730 C T WIZ Missense_Mutation p.R139Q 0.23 tolerated(0.14) benign(0.079) TCGA-GD-A6C6-01 19 17100522 17100522 G A CPAMD8 Silent p.L489L 0.61 TCGA-GD-A6C6-01 19 17881352 17881352 G A FCHO1 Missense_Mutation p.R152Q 0.50 deleterious(0) possibly_damaging(0.742) TCGA-GD-A6C6-01 19 19649166 19649166 C G CILP2 Missense_Mutation p.S3W 0.52 deleterious_low_confidence(0) unknown(0) TCGA-GD-A6C6-01 19 2015432 2015432 C A BTBD2 Nonsense_Mutation p.E91* 0.88 TCGA-GD-A6C6-01 19 20828150 20828150 G A ZNF626 Intron 0.29 TCGA-GD-A6C6-01 19 24010227 24010227 G A RPSAP58 Silent p.L88L 0.29 TCGA-GD-A6C6-01 19 31768368 31768368 G A TSHZ3 Silent p.L777L 0.43 TCGA-GD-A6C6-01 19 33444553 33444553 C T CEP89 Missense_Mutation p.D154N 0.07 tolerated(0.5) benign(0.004) TCGA-GD-A6C6-01 19 336110 336110 C A MIER2 Missense_Mutation p.G25W 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.874) TCGA-GD-A6C6-01 19 34960022 34960022 G C UBA2 Missense_Mutation p.E607Q 0.35 tolerated(0.55) benign(0.024) TCGA-GD-A6C6-01 19 35550851 35550851 G A HPN Missense_Mutation p.E122K 0.46 tolerated(0.28) benign(0.006) TCGA-GD-A6C6-01 19 35615969 35615969 G C LGI4 3'UTR 0.55 TCGA-GD-A6C6-01 19 38853419 38853419 G T CATSPERG Nonsense_Mutation p.E808* 0.43 TCGA-GD-A6C6-01 19 4357561 4357561 C T MPND Silent p.F405F 0.28 TCGA-GD-A6C6-01 19 47700520 47700520 G T SAE1 Missense_Mutation p.R255I 0.34 deleterious(0) probably_damaging(0.997) TCGA-GD-A6C6-01 19 47823262 47823262 C T C5AR1 Silent p.L76L 0.50 TCGA-GD-A6C6-01 19 49949873 49949873 C G PIH1D1 Missense_Mutation p.D256H 0.44 deleterious(0.03) possibly_damaging(0.867) TCGA-GD-A6C6-01 19 50393136 50393136 G A IL4I1 Missense_Mutation p.R521C 0.30 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 19 51537854 51537854 G T KLK12 Silent p.L8L 0.44 TCGA-GD-A6C6-01 19 55439096 55439096 G C NLRP7 Missense_Mutation p.S953C 0.38 deleterious(0) benign(0.41) TCGA-GD-A6C6-01 19 55663163 55663163 C T TNNI3 3'UTR 0.47 TCGA-GD-A6C6-01 19 5668400 5668400 C T SAFB 3'Flank 0.44 TCGA-GD-A6C6-01 19 58213087 58213087 C T ZNF154 Silent p.E410E 0.51 TCGA-GD-A6C6-01 19 9069357 9069357 G C MUC16 Nonsense_Mutation p.S6030* 0.32 TCGA-GD-A6C6-01 1 10384939 10384939 C G KIF1B Missense_Mutation p.F841L 0.23 tolerated(0.13) possibly_damaging(0.559) TCGA-GD-A6C6-01 1 104093574 104093574 G A RNPC3 Missense_Mutation p.R458H 0.28 deleterious(0.03) probably_damaging(0.987) TCGA-GD-A6C6-01 1 109366281 109366281 C G AKNAD1 Missense_Mutation p.D656H 0.29 tolerated(0.13) possibly_damaging(0.864) TCGA-GD-A6C6-01 1 110280310 110280310 G A GSTM3 Silent p.L146L 0.28 TCGA-GD-A6C6-01 1 117568524 117568524 C T CD101 Missense_Mutation p.S941L 0.23 deleterious(0.03) benign(0.039) TCGA-GD-A6C6-01 1 11907622 11907622 G A NPPA Silent p.F40F 0.62 TCGA-GD-A6C6-01 1 1203219 1203219 C T UBE2J2 Intron 0.62 TCGA-GD-A6C6-01 1 155112394 155112394 G C DPM3 3'UTR 0.88 TCGA-GD-A6C6-01 1 158735918 158735918 C T OR6N1 Silent p.L185L 0.24 TCGA-GD-A6C6-01 1 162344334 162344334 G A C1orf111 Missense_Mutation p.S97F 0.89 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 1 16259426 16259426 G C SPEN Missense_Mutation p.E2231Q 0.33 possibly_damaging(0.587) TCGA-GD-A6C6-01 1 175372341 175372341 C T TNR Missense_Mutation p.R304Q 0.88 tolerated(0.3) benign(0.008) TCGA-GD-A6C6-01 1 176993868 176993868 A T ASTN1 Missense_Mutation p.V374E 0.62 deleterious_low_confidence(0.03) benign(0.276) TCGA-GD-A6C6-01 1 201982329 201982329 G C ELF3 Missense_Mutation p.K236N 0.27 tolerated(0.09) possibly_damaging(0.791) TCGA-GD-A6C6-01 1 204966414 204966414 G A NFASC Missense_Mutation p.A967T 0.96 tolerated(0.63) unknown(0) TCGA-GD-A6C6-01 1 212560363 212560363 G C TMEM206 Missense_Mutation p.I132M 0.31 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-GD-A6C6-01 1 22207000 22207000 T C HSPG2 Missense_Mutation p.Q684R 0.35 possibly_damaging(0.531) TCGA-GD-A6C6-01 1 22837705 22837705 G A ZBTB40 Missense_Mutation p.E623K 0.63 deleterious(0.02) unknown(0) TCGA-GD-A6C6-01 1 230459115 230459115 G A PGBD5 3'UTR 0.17 TCGA-GD-A6C6-01 1 23769093 23769093 C T ASAP3 Silent p.E162E 0.46 TCGA-GD-A6C6-01 1 24674004 24674004 C G GRHL3 Silent p.L530L 0.27 TCGA-GD-A6C6-01 1 36437687 36437687 C G AGO3 Missense_Mutation p.I125M 0.66 deleterious(0.01) benign(0.089) TCGA-GD-A6C6-01 1 43891820 43891820 G A SZT2 Missense_Mutation p.R1014K 0.35 tolerated(0.64) possibly_damaging(0.87) TCGA-GD-A6C6-01 1 45974757 45974757 C G MMACHC Nonsense_Mutation p.S240* 0.32 TCGA-GD-A6C6-01 1 46521581 46521581 C T PIK3R3 Missense_Mutation p.R276H 0.22 tolerated(0.23) benign(0.011) TCGA-GD-A6C6-01 1 55194030 55194030 G C TTC4 Missense_Mutation p.Q202H 0.18 deleterious(0) benign(0.401) TCGA-GD-A6C6-01 1 65867548 65867548 G T DNAJC6 Missense_Mutation p.D738Y 0.26 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 1 82372890 82372890 G C LPHN2 Missense_Mutation p.D88H 0.18 deleterious(0) probably_damaging(0.967) TCGA-GD-A6C6-01 1 82372891 82372891 A G LPHN2 Missense_Mutation p.D88G 0.17 deleterious(0) possibly_damaging(0.719) TCGA-GD-A6C6-01 1 8384398 8384398 C T SLC45A1 Silent p.P3P 0.26 TCGA-GD-A6C6-01 20 13763243 13763243 C G ESF1 Missense_Mutation p.E182Q 0.21 tolerated_low_confidence(0.38) benign(0.004) TCGA-GD-A6C6-01 20 30904343 30904343 G C KIF3B Missense_Mutation p.R507T 0.50 tolerated(0.12) benign(0.005) TCGA-GD-A6C6-01 20 32267644 32267644 C T E2F1 Silent p.Q163Q 0.56 TCGA-GD-A6C6-01 20 43264906 43264906 G A ADA Silent p.D19D 0.24 TCGA-GD-A6C6-01 20 44486569 44486569 C T ZSWIM3 Silent p.S35S 0.30 TCGA-GD-A6C6-01 20 57766435 57766435 C G ZNF831 Missense_Mutation p.L121V 0.27 deleterious(0) probably_damaging(0.994) TCGA-GD-A6C6-01 20 58519916 58519916 G A FAM217B Nonsense_Mutation p.W306* 0.25 TCGA-GD-A6C6-01 20 6093264 6093264 C G FERMT1 Missense_Mutation p.R131T 0.20 deleterious(0) probably_damaging(0.981) TCGA-GD-A6C6-01 20 62839049 62839049 C T MYT1 Missense_Mutation p.S167F 0.30 benign(0.001) TCGA-GD-A6C6-01 21 10996140 10996140 C A TPTE Splice_Site 0.33 TCGA-GD-A6C6-01 21 30426152 30426152 C G USP16 Silent p.L741L 0.90 TCGA-GD-A6C6-01 21 30464817 30464817 C T MAP3K7CL Silent p.V95V 0.89 TCGA-GD-A6C6-01 21 39086839 39086839 G A KCNJ6 Silent p.T207T 0.91 TCGA-GD-A6C6-01 21 40568116 40568116 T C BRWD1 Intron 0.94 TCGA-GD-A6C6-01 21 40590539 40590539 C T BRWD1 Missense_Mutation p.E1144K 0.34 deleterious(0) probably_damaging(0.98) TCGA-GD-A6C6-01 22 17071728 17071728 G T CCT8L2 3'UTR 0.35 TCGA-GD-A6C6-01 22 21363001 21363001 G A AC002472.1 5'Flank 0.79 TCGA-GD-A6C6-01 22 30685455 30685455 C G GATSL3 Missense_Mutation p.R11P 0.68 deleterious(0) possibly_damaging(0.839) TCGA-GD-A6C6-01 22 38363207 38363207 C G POLR2F Intron 0.36 TCGA-GD-A6C6-01 22 42263232 42263232 G A SREBF2 Silent p.T162T 0.50 TCGA-GD-A6C6-01 2 108488991 108488991 G T RGPD4 Missense_Mutation p.D1511Y 0.19 deleterious(0) possibly_damaging(0.707) TCGA-GD-A6C6-01 2 114483106 114483106 C G SLC35F5 Missense_Mutation p.G367R 0.35 deleterious(0) probably_damaging(0.998) TCGA-GD-A6C6-01 2 128631779 128631779 G C AMMECR1L Silent p.L10L 0.14 TCGA-GD-A6C6-01 2 148731031 148731031 C A ORC4 Silent p.V40V 0.20 TCGA-GD-A6C6-01 2 15467991 15467991 C G NBAS Missense_Mutation p.E1489Q 0.31 tolerated(0.41) benign(0.003) TCGA-GD-A6C6-01 2 158636917 158636917 C A ACVR1 Missense_Mutation p.G88V 0.63 tolerated(0.55) benign(0.079) TCGA-GD-A6C6-01 2 158637080 158637080 T C ACVR1 Missense_Mutation p.M34V 0.33 tolerated(0.28) benign(0.003) TCGA-GD-A6C6-01 2 163045617 163045617 G C FAP Missense_Mutation p.Q539E 0.27 tolerated(0.2) possibly_damaging(0.596) TCGA-GD-A6C6-01 2 179423086 179423086 G A TTN Missense_Mutation p.L29034F 0.23 TCGA-GD-A6C6-01 2 179425247 179425247 C A TTN Nonsense_Mutation p.E28538* 0.35 TCGA-GD-A6C6-01 2 179579810 179579810 G A TTN Silent p.H8701H 0.28 TCGA-GD-A6C6-01 2 179594206 179594206 G C TTN Missense_Mutation p.P6226R 0.60 TCGA-GD-A6C6-01 2 191897738 191897738 C G STAT4 Missense_Mutation p.D664H 0.31 deleterious(0.02) possibly_damaging(0.786) TCGA-GD-A6C6-01 2 192228541 192228541 G A MYO1B Missense_Mutation p.E285K 0.30 tolerated(0.17) possibly_damaging(0.633) TCGA-GD-A6C6-01 2 202260143 202260143 C G TRAK2 Missense_Mutation p.R265T 0.30 tolerated(0.48) benign(0.063) TCGA-GD-A6C6-01 2 20455916 20455916 C A PUM2 Nonsense_Mutation p.E834* 0.24 TCGA-GD-A6C6-01 2 209007390 209007390 G C CRYGB Missense_Mutation p.S167C 0.58 deleterious(0) probably_damaging(0.995) TCGA-GD-A6C6-01 2 216983823 216983823 C T XRCC5 Silent p.F142F 0.59 TCGA-GD-A6C6-01 2 220097403 220097403 C T ANKZF1 Nonsense_Mutation p.Q186* 0.59 TCGA-GD-A6C6-01 2 232790153 232790153 C G NPPC Missense_Mutation p.M121I 0.30 tolerated(0.64) benign(0.072) TCGA-GD-A6C6-01 2 242430954 242430954 G C FARP2 Missense_Mutation p.E883Q 0.27 deleterious(0.04) possibly_damaging(0.756) TCGA-GD-A6C6-01 2 29375569 29375569 C G CLIP4 Nonsense_Mutation p.S347* 0.32 TCGA-GD-A6C6-01 2 30863115 30863115 C T LCLAT1 Missense_Mutation p.T292I 0.30 deleterious(0.05) benign(0.01) TCGA-GD-A6C6-01 2 39406207 39406207 T C CDKL4 3'UTR 0.30 TCGA-GD-A6C6-01 2 43776466 43776466 G A THADA Missense_Mutation p.P997S 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-GD-A6C6-01 2 43776467 43776467 C G THADA Missense_Mutation p.Q996H 0.29 deleterious(0) probably_damaging(0.996) TCGA-GD-A6C6-01 2 45169769 45169769 G A SIX3 Missense_Mutation p.E176K 0.20 deleterious(0) possibly_damaging(0.818) TCGA-GD-A6C6-01 2 48707065 48707065 A G PPP1R21 Missense_Mutation p.T410A 0.51 tolerated(0.19) possibly_damaging(0.491) TCGA-GD-A6C6-01 2 63215083 63215083 G C EHBP1 Missense_Mutation p.E911Q 0.22 tolerated_low_confidence(0.2) benign(0.005) TCGA-GD-A6C6-01 2 86254603 86254603 G A POLR1A Silent p.V1702V 0.62 TCGA-GD-A6C6-01 2 89544511 89544511 G A IGKV2-30 Missense_Mutation p.P38L 0.41 tolerated(0.17) benign(0.013) TCGA-GD-A6C6-01 2 98828416 98828416 G A VWA3B Silent p.L587L 0.25 TCGA-GD-A6C6-01 3 124369712 124369712 G C KALRN Missense_Mutation p.E178Q 0.88 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-GD-A6C6-01 3 126062643 126062643 C T KLF15 Missense_Mutation p.S393N 0.35 deleterious(0) benign(0.069) TCGA-GD-A6C6-01 3 126751293 126751293 G A PLXNA1 Silent p.K1765K 0.90 TCGA-GD-A6C6-01 3 130159412 130159412 G C COL6A5 Missense_Mutation p.R2077T 0.67 deleterious(0) probably_damaging(0.999) TCGA-GD-A6C6-01 3 131100937 131100937 G A NUDT16 Silent p.V62V 0.90 TCGA-GD-A6C6-01 3 137807238 137807238 C T DZIP1L Missense_Mutation p.E328K 0.20 deleterious(0.03) benign(0.179) TCGA-GD-A6C6-01 3 141012062 141012062 A G ACPL2 3'UTR 0.93 TCGA-GD-A6C6-01 3 151166040 151166040 G C IGSF10 Missense_Mutation p.Q577E 0.35 tolerated(0.76) benign(0.002) TCGA-GD-A6C6-01 3 15457320 15457320 G A METTL6 Missense_Mutation p.H164Y 0.18 deleterious(0.01) probably_damaging(0.942) TCGA-GD-A6C6-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.94 deleterious(0.02) probably_damaging(0.959) TCGA-GD-A6C6-01 3 185252791 185252791 G C LIPH Nonsense_Mutation p.S60* 0.26 TCGA-GD-A6C6-01 3 189584546 189584546 C G TP63 Missense_Mutation p.T281R 0.16 deleterious(0) probably_damaging(0.953) TCGA-GD-A6C6-01 3 194162096 194162096 C A ATP13A3 Nonsense_Mutation p.E552* 0.46 TCGA-GD-A6C6-01 3 32032326 32032326 G C ZNF860 Missense_Mutation p.R585S 0.38 deleterious(0.02) benign(0.136) TCGA-GD-A6C6-01 3 32207336 32207336 C G GPD1L Missense_Mutation p.I330M 0.63 deleterious(0) probably_damaging(0.996) TCGA-GD-A6C6-01 3 46414705 46414705 G A CCR5 Silent p.L104L 0.92 TCGA-GD-A6C6-01 3 47045991 47045991 G A NBEAL2 Missense_Mutation p.V2069I 0.94 deleterious(0.02) benign(0.194) TCGA-GD-A6C6-01 3 47677531 47677531 C T SMARCC1 Silent p.V824V 0.78 TCGA-GD-A6C6-01 3 49723618 49723618 G A MST1 Missense_Mutation p.R342W 0.60 deleterious(0) probably_damaging(0.978) TCGA-GD-A6C6-01 3 58124062 58124062 G A FLNB Missense_Mutation p.D1670N 0.88 tolerated(0.34) benign(0.107) TCGA-GD-A6C6-01 3 69998222 69998222 G C MITF Missense_Mutation p.L261F 0.43 tolerated(0.1) probably_damaging(0.92) TCGA-GD-A6C6-01 3 89259372 89259372 T A EPHA3 Silent p.G172G 0.21 TCGA-GD-A6C6-01 4 122722507 122722507 C T EXOSC9 5'UTR 0.08 TCGA-GD-A6C6-01 4 148993314 148993314 C T ARHGAP10 3'UTR 0.35 TCGA-GD-A6C6-01 4 149356372 149356372 C G NR3C2 Silent p.L547L 0.40 TCGA-GD-A6C6-01 4 154626069 154626069 C T TLR2 Silent p.F670F 0.36 TCGA-GD-A6C6-01 4 17528615 17528615 G T CLRN2 Missense_Mutation p.L203F 0.41 tolerated(0.11) probably_damaging(0.999) TCGA-GD-A6C6-01 4 177605001 177605001 C G VEGFC 3'UTR 0.55 TCGA-GD-A6C6-01 4 183959324 183959324 C T FAM92A1P2 RNA 0.33 TCGA-GD-A6C6-01 4 186536002 186536002 C G SORBS2 Missense_Mutation p.E1056Q 0.43 deleterious(0) probably_damaging(0.98) TCGA-GD-A6C6-01 4 187131662 187131662 C T CYP4V2 Missense_Mutation p.S482L 0.48 deleterious(0) possibly_damaging(0.686) TCGA-GD-A6C6-01 4 1944154 1944154 C T WHSC1 Intron 0.59 TCGA-GD-A6C6-01 4 2240692 2240692 G C HAUS3 Missense_Mutation p.Q330E 0.34 tolerated(0.27) benign(0.02) TCGA-GD-A6C6-01 4 24543624 24543624 C G DHX15 Missense_Mutation p.V453L 0.32 deleterious(0.04) probably_damaging(0.994) TCGA-GD-A6C6-01 4 24838120 24838120 C G CCDC149 Missense_Mutation p.E225Q 0.41 deleterious(0.03) probably_damaging(0.949) TCGA-GD-A6C6-01 4 90034942 90034942 C T TIGD2 Nonsense_Mutation p.Q273* 0.46 TCGA-GD-A6C6-01 5 1060513 1060513 C G SLC12A7 Missense_Mutation p.Q931H 0.59 deleterious(0) possibly_damaging(0.853) TCGA-GD-A6C6-01 5 130500907 130500907 C G HINT1 5'UTR 0.97 TCGA-GD-A6C6-01 5 13794072 13794072 C A DNAH5 Missense_Mutation p.M2661I 0.53 benign(0.072) TCGA-GD-A6C6-01 5 140221041 140221041 G A PCDHA8 Silent p.V45V 0.44 TCGA-GD-A6C6-01 5 14387735 14387735 C A TRIO Missense_Mutation p.N1253K 0.62 probably_damaging(0.968) TCGA-GD-A6C6-01 5 153766009 153766009 C T GALNT10 Intron 0.43 TCGA-GD-A6C6-01 5 156819849 156819849 G C CYFIP2 Missense_Mutation p.K1175N 0.38 tolerated(0.09) benign(0.248) TCGA-GD-A6C6-01 5 16478159 16478159 G T FAM134B Nonsense_Mutation p.S286* 0.52 TCGA-GD-A6C6-01 5 256519 256519 C - SDHA Frame_Shift_Del p.I661Ffs*21 0.16 TCGA-GD-A6C6-01 5 33448724 33448732 GGCAGAAAA - TARS In_Frame_Del p.A76_K78del 0.36 TCGA-GD-A6C6-01 5 35727901 35727901 C A SPEF2 Silent p.V1013V 0.52 TCGA-GD-A6C6-01 5 40841605 40841605 G A CARD6 Missense_Mutation p.E41K 0.48 deleterious(0) probably_damaging(0.965) TCGA-GD-A6C6-01 5 56777442 56777442 C T ACTBL2 Missense_Mutation p.E365K 0.91 deleterious_low_confidence(0.03) possibly_damaging(0.57) TCGA-GD-A6C6-01 5 66441000 66441000 G C MAST4 Missense_Mutation p.D963H 0.96 benign(0.044) TCGA-GD-A6C6-01 5 66441162 66441162 G A MAST4 Missense_Mutation p.E1017K 0.98 benign(0.234) TCGA-GD-A6C6-01 5 71616333 71616333 G - PTCD2 Frame_Shift_Del p.G42Efs*12 0.54 TCGA-GD-A6C6-01 5 74877088 74877088 C A POLK Missense_Mutation p.P250Q 0.39 deleterious(0) probably_damaging(0.995) TCGA-GD-A6C6-01 5 76349883 76349883 G A AGGF1 Missense_Mutation p.D521N 0.35 tolerated(0.07) benign(0.033) TCGA-GD-A6C6-01 5 82835171 82835171 G C VCAN Missense_Mutation p.E2117Q 0.41 deleterious(0.03) benign(0.411) TCGA-GD-A6C6-01 5 94756035 94756035 T C FAM81B Silent p.T195T 0.85 TCGA-GD-A6C6-01 5 95091439 95091439 C G RHOBTB3 Nonsense_Mutation p.S341* 0.40 TCGA-GD-A6C6-01 6 102503446 102503446 A T GRIK2 Missense_Mutation p.Q851H 0.23 tolerated(0.11) benign(0.004) TCGA-GD-A6C6-01 6 108385488 108385488 G A OSTM1 Nonsense_Mutation p.Q140* 0.64 TCGA-GD-A6C6-01 6 10877426 10877426 G A GCM2 Missense_Mutation p.S97F 0.29 deleterious(0) probably_damaging(0.974) TCGA-GD-A6C6-01 6 126073159 126073159 G A HEY2 Missense_Mutation p.E57K 0.21 deleterious(0) probably_damaging(1) TCGA-GD-A6C6-01 6 137519303 137519303 G A IFNGR1 Silent p.L445L 0.30 TCGA-GD-A6C6-01 6 143093575 143093575 A C HIVEP2 Silent p.P767P 0.20 TCGA-GD-A6C6-01 6 146350808 146350808 C T GRM1 Missense_Mutation p.S52L 0.30 deleterious(0.01) probably_damaging(0.987) TCGA-GD-A6C6-01 6 152676018 152676018 C T SYNE1 Missense_Mutation p.E3568K 0.27 possibly_damaging(0.676) TCGA-GD-A6C6-01 6 27782391 27782391 C A HIST1H2AJ Missense_Mutation p.R43L 0.52 deleterious_low_confidence(0) benign(0.183) TCGA-GD-A6C6-01 6 31637213 31637213 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.G162D 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-GD-A6C6-01 6 31938207 31938207 C T DXO Silent p.P287P 0.29 TCGA-GD-A6C6-01 6 32944710 32944710 C G BRD2 Silent p.V399V 0.24 TCGA-GD-A6C6-01 6 33654251 33654251 C T ITPR3 Silent p.I1978I 0.22 TCGA-GD-A6C6-01 6 36507963 36507963 G C STK38 Nonsense_Mutation p.S6* 0.27 TCGA-GD-A6C6-01 6 41129233 41129233 C G TREM2 Missense_Mutation p.Q53H 0.33 tolerated(0.18) possibly_damaging(0.774) TCGA-GD-A6C6-01 6 52993695 52993695 G A GCM1 Missense_Mutation p.S207F 0.32 deleterious(0.04) probably_damaging(0.957) TCGA-GD-A6C6-01 6 7365729 7365729 T C CAGE1 Missense_Mutation p.H722R 0.30 deleterious(0.03) probably_damaging(0.923) TCGA-GD-A6C6-01 6 83075164 83075164 C T TPBG Silent p.F162F 0.64 TCGA-GD-A6C6-01 7 100253137 100253137 C G ACTL6B Missense_Mutation p.E59Q 0.27 tolerated(0.55) benign(0.026) TCGA-GD-A6C6-01 7 100304779 100304779 A G POP7 Missense_Mutation p.D109G 0.96 deleterious(0.01) probably_damaging(0.977) TCGA-GD-A6C6-01 7 131082043 131082043 G T MKLN1 Nonsense_Mutation p.G140* 0.37 TCGA-GD-A6C6-01 7 131887531 131887531 G A PLXNA4 Silent p.D820D 0.39 TCGA-GD-A6C6-01 7 142000862 142000862 G C TRBV2 5'UTR 0.25 TCGA-GD-A6C6-01 7 143632882 143632882 G T OR2F2 Missense_Mutation p.R186M 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-GD-A6C6-01 7 26224208 26224208 C G NFE2L3 Missense_Mutation p.S297C 0.23 deleterious(0.03) benign(0.061) TCGA-GD-A6C6-01 7 50514709 50514709 G C FIGNL1 Missense_Mutation p.Q93E 0.16 tolerated(0.06) benign(0.169) TCGA-GD-A6C6-01 7 92027045 92027045 G C ANKIB1 Missense_Mutation p.E802Q 0.94 tolerated_low_confidence(0.09) benign(0.006) TCGA-GD-A6C6-01 7 99754147 99754147 G C C7orf43 Missense_Mutation p.P368A 0.20 deleterious(0) benign(0.05) TCGA-GD-A6C6-01 8 105463529 105463529 G T DPYS Missense_Mutation p.P123H 0.23 deleterious(0.02) probably_damaging(0.91) TCGA-GD-A6C6-01 8 110100122 110100122 C T TRHR Silent p.I127I 0.44 TCGA-GD-A6C6-01 8 11643679 11643679 A C NEIL2 Missense_Mutation p.K299T 0.92 deleterious(0) possibly_damaging(0.894) TCGA-GD-A6C6-01 8 116599644 116599644 G A TRPS1 Silent p.L762L 0.66 TCGA-GD-A6C6-01 8 125058088 125058088 G A FER1L6 Silent p.E890E 0.29 TCGA-GD-A6C6-01 8 126017905 126017905 G C SQLE Missense_Mutation p.R228T 0.22 deleterious(0) possibly_damaging(0.846) TCGA-GD-A6C6-01 8 131949440 131949440 G A ADCY8 Missense_Mutation p.H454Y 0.74 deleterious(0) probably_damaging(0.99) TCGA-GD-A6C6-01 8 133141940 133141940 C A KCNQ3 Missense_Mutation p.V730F 0.30 tolerated(0.25) benign(0.027) TCGA-GD-A6C6-01 8 144462027 144462027 G A RHPN1 Missense_Mutation p.R325Q 0.08 tolerated(1) benign(0.016) TCGA-GD-A6C6-01 8 144892699 144892699 C T SCRIB Missense_Mutation p.E494K 0.23 possibly_damaging(0.786) TCGA-GD-A6C6-01 8 144992367 144992367 G C PLEC Silent p.L4011L 0.41 TCGA-GD-A6C6-01 8 145739714 145739714 C T RECQL4 Silent p.L579L 0.43 TCGA-GD-A6C6-01 8 146115409 146115409 G C ZNF250 Silent p.L31L 0.44 TCGA-GD-A6C6-01 8 22475874 22475874 G A CCAR2 Missense_Mutation p.D696N 0.91 tolerated(0.19) possibly_damaging(0.628) TCGA-GD-A6C6-01 8 23712095 23712095 C G STC1 5'UTR 0.97 TCGA-GD-A6C6-01 8 42852739 42852739 T C HOOK3 Silent p.L527L 0.94 TCGA-GD-A6C6-01 8 82670800 82670800 C T CHMP4C 3'UTR 0.21 TCGA-GD-A6C6-01 8 91064101 91064101 C G DECR1 Silent p.L328L 0.43 TCGA-GD-A6C6-01 9 117119169 117119169 A G AKNA Silent p.T940T 0.37 TCGA-GD-A6C6-01 9 131607662 131607662 C T CCBL1 Missense_Mutation p.R8Q 0.83 tolerated(0.08) benign(0.002) TCGA-GD-A6C6-01 9 131678685 131678685 G A LRRC8A 3'UTR 0.88 TCGA-GD-A6C6-01 9 137702143 137702143 A G COL5A1 Missense_Mutation p.K1173E 0.28 unknown(0) TCGA-GD-A6C6-01 9 138836948 138836948 C T UBAC1 Missense_Mutation p.E268K 0.85 tolerated(0.4) possibly_damaging(0.579) TCGA-GD-A6C6-01 9 34371618 34371618 C A KIAA1161 Missense_Mutation p.D408Y 0.86 deleterious(0) probably_damaging(0.933) TCGA-GD-A6C6-01 9 35750299 35750299 G A RGP1 Missense_Mutation p.R59Q 0.89 deleterious(0.05) benign(0.154) TCGA-GD-A6C6-01 9 74300722 74300722 A C TMEM2 Missense_Mutation p.L1298V 0.33 tolerated(0.51) benign(0.001) TCGA-GD-A6C6-01 9 84608887 84608887 A G SPATA31D1 Missense_Mutation p.S1168G 0.47 deleterious(0.02) benign(0.084) TCGA-GD-A6C6-01 9 86900259 86900259 C T SLC28A3 Splice_Site p.X549_splice 0.34 TCGA-GD-A6C6-01 X 100333847 100333847 C G TMEM35 5'UTR 0.88 TCGA-GD-A6C6-01 X 123220472 123220472 T - STAG2 Frame_Shift_Del p.Y1044Tfs*6 0.52 TCGA-GD-A6C6-01 X 128881675 128881675 G A XPNPEP2 Missense_Mutation p.E195K 0.97 deleterious(0.04) benign(0.005) TCGA-GD-A6C6-01 X 133609215 133609215 G A HPRT1 Missense_Mutation p.E47K 0.86 deleterious(0.03) benign(0.063) TCGA-GD-A6C6-01 X 30695563 30695563 G A GK Missense_Mutation p.A111T 0.53 deleterious(0.01) probably_damaging(1) TCGA-GD-A6C6-01 X 44879934 44879935 - TT KDM6A Frame_Shift_Ins p.M176Lfs*5 0.49 TCGA-GD-A6C6-01 X 54783666 54783666 G A ITIH6 Silent p.L947L 1.00 TCGA-GD-A6C6-01 X 73042567 73042567 G A XIST RNA 0.43 TCGA-GD-A6C6-01 X 76829715 76829715 C G ATRX Missense_Mutation p.R2109T 0.92 benign(0.385) TCGA-GD-A76B-01 10 103609556 103609556 C T C10orf76 Missense_Mutation p.E652K 0.12 tolerated(0.05) probably_damaging(0.969) TCGA-GD-A76B-01 10 133106606 133106606 C T TCERG1L Missense_Mutation p.E180K 0.07 deleterious(0) possibly_damaging(0.884) TCGA-GD-A76B-01 10 47087175 47087175 C T NPY4R Missense_Mutation p.S131L 0.12 deleterious(0) probably_damaging(0.992) TCGA-GD-A76B-01 10 70721909 70721909 C T DDX21 Silent p.L201L 0.08 TCGA-GD-A76B-01 10 88414588 88414588 G A OPN4 Silent p.E16E 0.10 TCGA-GD-A76B-01 10 93252127 93252127 G C HECTD2 Missense_Mutation p.D440H 0.15 deleterious(0) probably_damaging(0.996) TCGA-GD-A76B-01 11 114270894 114270894 G A C11orf71 Missense_Mutation p.R54W 0.25 tolerated_low_confidence(0.06) probably_damaging(0.941) TCGA-GD-A76B-01 11 122953896 122953896 T A CLMP Silent p.R192R 0.05 TCGA-GD-A76B-01 11 18451308 18451308 G A LDHC Missense_Mutation p.R90K 0.12 tolerated(1) benign(0.001) TCGA-GD-A76B-01 11 31625337 31625337 G A ELP4 Missense_Mutation p.R179K 0.05 tolerated(0.5) benign(0.02) TCGA-GD-A76B-01 11 5410829 5410829 G A OR51M1 Silent p.L67L 0.11 TCGA-GD-A76B-01 11 55606419 55606419 C T OR5D16 Silent p.F64F 0.14 TCGA-GD-A76B-01 11 62677791 62677791 C T CHRM1 Missense_Mutation p.R261H 0.34 tolerated(0.14) benign(0.002) TCGA-GD-A76B-01 11 9225496 9225496 C T DENND5A Silent p.R220R 0.22 TCGA-GD-A76B-01 12 108138415 108138415 G A PRDM4 Missense_Mutation p.P434S 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-GD-A76B-01 12 110777385 110777385 C T ATP2A2 Silent p.V540V 0.14 TCGA-GD-A76B-01 12 15262277 15262277 C T RERG Missense_Mutation p.D123N 0.14 tolerated(0.21) benign(0.139) TCGA-GD-A76B-01 12 3031463 3031463 G A TULP3 Missense_Mutation p.E97K 0.19 tolerated(0.63) benign(0.001) TCGA-GD-A76B-01 12 45417677 45417677 C T DBX2 Missense_Mutation p.R167K 0.23 tolerated(0.26) possibly_damaging(0.655) TCGA-GD-A76B-01 12 45803269 45803269 G C ANO6 Missense_Mutation p.M691I 0.31 deleterious(0) benign(0.068) TCGA-GD-A76B-01 12 56743001 56743001 G A STAT2 Silent p.L462L 0.18 TCGA-GD-A76B-01 13 103418900 103418900 G A TEX30 Nonsense_Mutation p.Q179* 0.05 TCGA-GD-A76B-01 13 20763093 20763093 A C GJB2 Missense_Mutation p.L210V 0.21 tolerated(0.34) benign(0.105) TCGA-GD-A76B-01 13 33096356 33096356 T C N4BP2L2 Missense_Mutation p.N50S 0.18 deleterious(0) probably_damaging(0.999) TCGA-GD-A76B-01 13 39424199 39424199 G A FREM2 Missense_Mutation p.R2135Q 0.21 tolerated(0.52) possibly_damaging(0.687) TCGA-GD-A76B-01 13 42390853 42390853 C G VWA8 Missense_Mutation p.R643T 0.09 deleterious(0) probably_damaging(0.979) TCGA-GD-A76B-01 13 73649892 73649892 C G KLF5 Missense_Mutation p.F414L 0.07 deleterious(0) probably_damaging(0.966) TCGA-GD-A76B-01 13 95861690 95861690 C T ABCC4 Silent p.L261L 0.07 TCGA-GD-A76B-01 14 103986245 103986245 C T CKB Missense_Mutation p.E368K 0.14 deleterious(0.03) benign(0.362) TCGA-GD-A76B-01 14 20345046 20345046 C T OR4K2 Missense_Mutation p.A207V 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-GD-A76B-01 14 21870196 21870196 C T CHD8 Missense_Mutation p.E1328K 0.11 deleterious(0) probably_damaging(0.98) TCGA-GD-A76B-01 14 31405713 31405713 C T STRN3 Missense_Mutation p.M278I 0.11 tolerated(0.47) benign(0) TCGA-GD-A76B-01 14 45693640 45693640 C T MIS18BP1 Missense_Mutation p.R717H 0.13 tolerated(0.21) benign(0.002) TCGA-GD-A76B-01 14 58471826 58471826 G A C14orf37 Silent p.L732L 0.06 TCGA-GD-A76B-01 14 73989210 73989210 C T HEATR4 Missense_Mutation p.R216Q 0.17 tolerated(0.52) probably_damaging(0.999) TCGA-GD-A76B-01 14 90782950 90782950 C T NRDE2 Missense_Mutation p.G127S 0.07 tolerated(0.56) benign(0.002) TCGA-GD-A76B-01 14 94008943 94008943 G A UNC79 Silent p.L375L 0.19 TCGA-GD-A76B-01 15 102226192 102226192 G A TARSL2 Missense_Mutation p.S465L 0.10 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 15 23261104 23261104 C T GOLGA8I Missense_Mutation p.S260L 0.24 deleterious(0.05) benign(0.013) TCGA-GD-A76B-01 15 43620576 43620576 G C LCMT2 3'UTR 0.27 TCGA-GD-A76B-01 15 50884255 50884255 G A TRPM7 Missense_Mutation p.H1393Y 0.11 tolerated_low_confidence(0.13) benign(0.123) TCGA-GD-A76B-01 15 63855159 63855159 G A USP3 Missense_Mutation p.S238N 0.15 deleterious(0) probably_damaging(0.99) TCGA-GD-A76B-01 15 63950767 63950767 C T HERC1 Missense_Mutation p.R3192K 0.25 probably_damaging(0.977) TCGA-GD-A76B-01 15 68606139 68606139 C T ITGA11 Missense_Mutation p.E954K 0.27 deleterious(0) probably_damaging(0.958) TCGA-GD-A76B-01 15 72191031 72191031 C G MYO9A Missense_Mutation p.K1271N 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GD-A76B-01 16 258098 258098 G A LUC7L Silent p.I115I 0.12 TCGA-GD-A76B-01 16 28157512 28157512 C G XPO6 Missense_Mutation p.G413R 0.07 tolerated(0.11) possibly_damaging(0.566) TCGA-GD-A76B-01 16 57695846 57695846 C G GPR56 Silent p.L640L 0.22 TCGA-GD-A76B-01 16 67985831 67985831 A G SLC12A4 Missense_Mutation p.C345R 0.31 deleterious(0) probably_damaging(0.962) TCGA-GD-A76B-01 16 68380160 68380164 CGATA - PRMT7 Frame_Shift_Del p.Y391Pfs*54 0.27 TCGA-GD-A76B-01 16 70070411 70070411 G A PDXDC2P RNA 0.13 TCGA-GD-A76B-01 17 10428259 10428259 G C MYH2 Missense_Mutation p.H1596D 0.25 deleterious(0.01) benign(0.201) TCGA-GD-A76B-01 17 18063246 18063246 C T MYO15A Intron 0.30 TCGA-GD-A76B-01 17 18064712 18064712 C T MYO15A Silent p.L3156L 0.28 TCGA-GD-A76B-01 17 1840117 1840117 G A RTN4RL1 Silent p.H333H 0.30 TCGA-GD-A76B-01 17 2341488 2341488 G C METTL16 Missense_Mutation p.P268R 0.06 tolerated(0.1) benign(0.018) TCGA-GD-A76B-01 17 2570426 2570426 C T PAFAH1B1 Silent p.V111V 0.14 TCGA-GD-A76B-01 17 3119569 3119569 C G OR1A1 Missense_Mutation p.R219G 0.16 tolerated(0.28) benign(0.425) TCGA-GD-A76B-01 17 37566429 37566429 G A MED1 Missense_Mutation p.S682L 0.27 tolerated_low_confidence(0.11) benign(0.415) TCGA-GD-A76B-01 17 37886523 37886523 C T MIEN1 Silent p.A37A 0.33 TCGA-GD-A76B-01 17 38430138 38430138 G A WIPF2 Missense_Mutation p.R356Q 0.10 deleterious(0.01) possibly_damaging(0.743) TCGA-GD-A76B-01 17 39742778 39742778 G T KRT14 Silent p.G103G 0.36 TCGA-GD-A76B-01 17 39919236 39919236 T C JUP Missense_Mutation p.K499R 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-GD-A76B-01 17 40265623 40265623 G A KAT2A 3'UTR 0.15 TCGA-GD-A76B-01 17 41108502 41108502 C T AARSD1 Silent p.E155E 0.37 TCGA-GD-A76B-01 17 57917142 57917142 T C VMP1 Missense_Mutation p.L364S 0.35 deleterious(0) probably_damaging(0.929) TCGA-GD-A76B-01 17 6350812 6350812 C G FAM64A Silent p.T108T 0.10 TCGA-GD-A76B-01 17 65014374 65014374 C T CACNG4 Missense_Mutation p.S97L 0.15 deleterious(0.02) possibly_damaging(0.523) TCGA-GD-A76B-01 17 650517 650517 C T GEMIN4 Missense_Mutation p.D256N 0.17 tolerated(0.31) benign(0.037) TCGA-GD-A76B-01 17 7229863 7229863 C T NEURL4 Missense_Mutation p.R366H 0.08 deleterious(0) probably_damaging(0.999) TCGA-GD-A76B-01 17 72539069 72539069 G A CD300C Missense_Mutation p.T153M 0.10 deleterious(0.05) possibly_damaging(0.714) TCGA-GD-A76B-01 17 72787094 72787094 G A TMEM104 Splice_Site p.X116_splice 0.17 TCGA-GD-A76B-01 17 76832453 76832453 C G USP36 Intron 0.18 TCGA-GD-A76B-01 18 21053464 21053464 T G RIOK3 Missense_Mutation p.L296R 0.10 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 18 29704794 29704794 C T RNF138 Nonsense_Mutation p.Q183* 0.16 TCGA-GD-A76B-01 18 47015893 47015893 C G RPL17 Missense_Mutation p.E115Q 0.12 deleterious(0.04) possibly_damaging(0.858) TCGA-GD-A76B-01 18 51750449 51750449 T C MBD2 Missense_Mutation p.K161E 0.24 deleterious(0) benign(0.413) TCGA-GD-A76B-01 18 7231979 7231979 G A LRRC30 Silent p.P281P 0.08 TCGA-GD-A76B-01 18 77710815 77710815 G C PQLC1 Missense_Mutation p.R38G 0.14 deleterious(0.01) possibly_damaging(0.719) TCGA-GD-A76B-01 19 13015350 13015350 C T SYCE2 Missense_Mutation p.D88N 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-GD-A76B-01 19 14204512 14204512 C T PRKACA Silent p.K286K 0.11 TCGA-GD-A76B-01 19 32954836 32954836 G C DPY19L3 Missense_Mutation p.E503Q 0.30 deleterious(0.04) benign(0.142) TCGA-GD-A76B-01 19 34895659 34895659 C T RP11-618P17.4 Missense_Mutation p.H101Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-GD-A76B-01 19 37100889 37100889 G C ZNF382 Missense_Mutation p.D25H 0.12 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 19 39329054 39329054 C G HNRNPL Missense_Mutation p.E514Q 0.24 tolerated(0.15) benign(0.003) TCGA-GD-A76B-01 19 44590110 44590110 C G ZNF284 Missense_Mutation p.S160C 0.12 deleterious(0.03) possibly_damaging(0.678) TCGA-GD-A76B-01 19 44611954 44611954 G A ZNF224 Silent p.K547K 0.26 TCGA-GD-A76B-01 19 57037124 57037124 G T ZNF471 Missense_Mutation p.R563I 0.12 deleterious(0) probably_damaging(0.998) TCGA-GD-A76B-01 19 58565117 58565117 G A ZSCAN1 Missense_Mutation p.E309K 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-GD-A76B-01 19 59065496 59065496 C T CHMP2A Silent p.E28E 0.11 TCGA-GD-A76B-01 19 6741124 6741124 C G TRIP10 Missense_Mutation p.A43G 0.14 deleterious(0) probably_damaging(0.927) TCGA-GD-A76B-01 19 6751082 6751082 G A TRIP10 Missense_Mutation p.E500K 0.11 deleterious(0) probably_damaging(0.999) TCGA-GD-A76B-01 1 109897138 109897138 C G SORT1 Missense_Mutation p.E187Q 0.26 deleterious(0.03) benign(0.007) TCGA-GD-A76B-01 1 110754601 110754601 C G KCNC4 Missense_Mutation p.I160M 0.27 deleterious(0.04) possibly_damaging(0.642) TCGA-GD-A76B-01 1 115167897 115167898 - T DENND2C Frame_Shift_Ins p.Y237Ifs*3 0.10 TCGA-GD-A76B-01 1 149760120 149760120 C G FCGR1A Nonsense_Mutation p.S169* 0.11 TCGA-GD-A76B-01 1 151276057 151276057 C G PI4KB Missense_Mutation p.E506Q 0.21 deleterious(0.02) possibly_damaging(0.522) TCGA-GD-A76B-01 1 154544322 154544322 G A CHRNB2 Silent p.E341E 0.23 TCGA-GD-A76B-01 1 154988052 154988052 G A ZBTB7B Missense_Mutation p.D340N 0.15 deleterious(0.05) benign(0.022) TCGA-GD-A76B-01 1 155638472 155638472 C T YY1AP1 Silent p.L413L 0.15 TCGA-GD-A76B-01 1 160057491 160057491 C G KCNJ9 Missense_Mutation p.R356G 0.11 tolerated(0.34) possibly_damaging(0.647) TCGA-GD-A76B-01 1 161487893 161487893 C G FCGR2A Missense_Mutation p.I303M 0.22 deleterious_low_confidence(0.02) benign(0.037) TCGA-GD-A76B-01 1 171076826 171076826 C T FMO3 Missense_Mutation p.S111F 0.23 tolerated(0.09) possibly_damaging(0.515) TCGA-GD-A76B-01 1 186094813 186094813 G A HMCN1 Missense_Mutation p.D4193N 0.15 probably_damaging(0.998) TCGA-GD-A76B-01 1 200572410 200572410 C T KIF14 Silent p.S641S 0.12 TCGA-GD-A76B-01 1 201981084 201981085 - A ELF3 Frame_Shift_Ins p.K56Efs*36 0.33 TCGA-GD-A76B-01 1 204380497 204380497 G A PPP1R15B Missense_Mutation p.R15W 0.12 tolerated_low_confidence(0.15) benign(0.028) TCGA-GD-A76B-01 1 216061779 216061779 C T USH2A Missense_Mutation p.D2738N 0.12 benign(0.386) TCGA-GD-A76B-01 1 232941880 232941880 G A MAP10 Missense_Mutation p.E371K 0.12 tolerated(0.1) benign(0.014) TCGA-GD-A76B-01 1 27089676 27089676 C T ARID1A Nonsense_Mutation p.Q878* 0.28 TCGA-GD-A76B-01 1 27700473 27700473 C A FCN3 Missense_Mutation p.G72V 0.07 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 1 29528483 29528483 C G MECR Missense_Mutation p.R243T 0.24 deleterious(0) benign(0.133) TCGA-GD-A76B-01 1 29528535 29528535 C G MECR Missense_Mutation p.D226H 0.26 deleterious(0.02) benign(0.028) TCGA-GD-A76B-01 1 37948757 37948757 G C ZC3H12A Missense_Mutation p.E449Q 0.19 tolerated(0.09) probably_damaging(0.949) TCGA-GD-A76B-01 1 40747027 40747027 C T ZMPSTE24 Missense_Mutation p.S261F 0.09 deleterious(0) probably_damaging(0.967) TCGA-GD-A76B-01 1 62970400 62970400 G A DOCK7 Silent p.L1524L 0.10 TCGA-GD-A76B-01 1 64011692 64011692 C G EFCAB7 Missense_Mutation p.L304V 0.12 tolerated(0.12) benign(0.021) TCGA-GD-A76B-01 1 87026019 87026019 A C CLCA4 Missense_Mutation p.K142N 0.05 tolerated(0.76) benign(0.046) TCGA-GD-A76B-01 20 21492707 21492707 C T NKX2-2 Missense_Mutation p.A226T 0.10 tolerated(0.06) possibly_damaging(0.642) TCGA-GD-A76B-01 20 43135557 43135557 C G SERINC3 Missense_Mutation p.D232H 0.21 tolerated(0.06) probably_damaging(0.991) TCGA-GD-A76B-01 20 43959198 43959198 G C SDC4 Missense_Mutation p.L85V 0.31 tolerated(0.21) benign(0.137) TCGA-GD-A76B-01 20 44984468 44984468 G C SLC35C2 Missense_Mutation p.F127L 0.29 deleterious(0) possibly_damaging(0.901) TCGA-GD-A76B-01 20 44987141 44987141 C G SLC35C2 Missense_Mutation p.G2A 0.10 deleterious_low_confidence(0.01) benign(0.411) TCGA-GD-A76B-01 20 5099478 5099478 C T PCNA Missense_Mutation p.D86N 0.23 deleterious(0) probably_damaging(0.999) TCGA-GD-A76B-01 20 52192323 52192323 C A ZNF217 Missense_Mutation p.G994W 0.12 deleterious(0) probably_damaging(0.996) TCGA-GD-A76B-01 20 60902601 60902601 G A LAMA5 Missense_Mutation p.S1641F 0.19 benign(0.002) TCGA-GD-A76B-01 20 61981231 61981231 G T CHRNA4 Missense_Mutation p.A511D 0.17 tolerated(0.19) benign(0.01) TCGA-GD-A76B-01 21 37586781 37586781 C T DOPEY2 Silent p.D352D 0.08 TCGA-GD-A76B-01 21 46032697 46032697 C A KRTAP10-8 Missense_Mutation p.S227Y 0.19 deleterious(0) unknown(0) TCGA-GD-A76B-01 21 47841940 47841940 C G PCNT Missense_Mutation p.Q2361E 0.12 benign(0.001) TCGA-GD-A76B-01 22 18209497 18209497 G A BCL2L13 Missense_Mutation p.E219K 0.22 deleterious(0) probably_damaging(0.993) TCGA-GD-A76B-01 22 32651314 32651314 C T SLC5A4 Translation_Start_Site p.M1? 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-GD-A76B-01 22 33376633 33376633 C A SYN3 Missense_Mutation p.E122D 0.12 deleterious(0) unknown(0) TCGA-GD-A76B-01 22 46125304 46125304 G A ATXN10 Splice_Site p.X243_splice 0.26 TCGA-GD-A76B-01 22 50925276 50925276 G A MIOX 5'UTR 0.42 TCGA-GD-A76B-01 2 1079216 1079216 A G SNTG2 Missense_Mutation p.I29V 0.11 tolerated(0.27) benign(0.002) TCGA-GD-A76B-01 2 131984404 131984404 C G POTEE Silent p.L273L 0.10 TCGA-GD-A76B-01 2 152520352 152520352 C T NEB Missense_Mutation p.E1825K 0.08 probably_damaging(0.967) TCGA-GD-A76B-01 2 168725533 168725533 G A B3GALT1 5'UTR 0.08 TCGA-GD-A76B-01 2 183011788 183011788 C T PDE1A 3'UTR 0.10 TCGA-GD-A76B-01 2 203147169 203147169 G A NOP58 Missense_Mutation p.D91N 0.15 deleterious(0) probably_damaging(0.992) TCGA-GD-A76B-01 2 210561679 210561679 G A MAP2 Missense_Mutation p.V1476I 0.12 tolerated(0.11) possibly_damaging(0.842) TCGA-GD-A76B-01 2 233321091 233321091 C G ALPI Missense_Mutation p.Q34E 0.15 tolerated(0.18) benign(0.001) TCGA-GD-A76B-01 2 27353230 27353230 C T ABHD1 Missense_Mutation p.R318W 0.05 deleterious(0.01) possibly_damaging(0.713) TCGA-GD-A76B-01 2 27373073 27373073 C G TCF23 Missense_Mutation p.A102G 0.07 deleterious(0.03) possibly_damaging(0.583) TCGA-GD-A76B-01 2 44429085 44429085 G A PPM1B Missense_Mutation p.M249I 0.15 tolerated(0.13) possibly_damaging(0.865) TCGA-GD-A76B-01 2 54891635 54891635 G T SPTBN1 Nonsense_Mutation p.E2156* 0.27 TCGA-GD-A76B-01 2 71148366 71148366 G A VAX2 Missense_Mutation p.G129D 0.22 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 2 71892340 71892340 C T DYSF Silent p.L1741L 0.29 TCGA-GD-A76B-01 2 88874770 88874770 G C EIF2AK3 Nonsense_Mutation p.S744* 0.29 TCGA-GD-A76B-01 2 88874861 88874861 G T EIF2AK3 Missense_Mutation p.P714T 0.29 tolerated(0.27) benign(0.009) TCGA-GD-A76B-01 2 88874949 88874949 G A EIF2AK3 Silent p.L684L 0.24 TCGA-GD-A76B-01 3 100605051 100605051 C G ABI3BP Missense_Mutation p.G200A 0.05 deleterious(0) possibly_damaging(0.794) TCGA-GD-A76B-01 3 10065315 10065315 C G FANCD2 5'Flank 0.10 TCGA-GD-A76B-01 3 10280688 10280688 C G IRAK2 Missense_Mutation p.S577C 0.29 deleterious(0.05) possibly_damaging(0.625) TCGA-GD-A76B-01 3 121413923 121413923 C T GOLGB1 Missense_Mutation p.C1816Y 0.39 benign(0) TCGA-GD-A76B-01 3 130452578 130452578 G A PIK3R4 Missense_Mutation p.L422F 0.26 deleterious(0.02) possibly_damaging(0.701) TCGA-GD-A76B-01 3 14731530 14731530 G A C3orf20 Missense_Mutation p.G218R 0.20 deleterious(0.01) probably_damaging(1) TCGA-GD-A76B-01 3 15297740 15297740 G A SH3BP5 Silent p.S407S 0.13 TCGA-GD-A76B-01 3 15297839 15297839 G A SH3BP5 Intron 0.18 TCGA-GD-A76B-01 3 15297951 15297951 G A SH3BP5 Intron 0.22 TCGA-GD-A76B-01 3 15301189 15301189 G A SH3BP5 Intron 0.19 TCGA-GD-A76B-01 3 153909150 153909150 G A ARHGEF26 Missense_Mutation p.M571I 0.07 deleterious(0) benign(0.349) TCGA-GD-A76B-01 3 155200468 155200468 G C PLCH1 Nonsense_Mutation p.S1124* 0.11 TCGA-GD-A76B-01 3 167159934 167159934 G T SERPINI2 Missense_Mutation p.T394N 0.11 tolerated(0.23) benign(0.105) TCGA-GD-A76B-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-GD-A76B-01 3 40574039 40574039 G C ZNF621 Missense_Mutation p.E260Q 0.13 deleterious(0) probably_damaging(0.993) TCGA-GD-A76B-01 3 49154958 49154958 G A USP19 Missense_Mutation p.S173F 0.15 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-GD-A76B-01 3 89156859 89156859 A G EPHA3 5'UTR 0.25 TCGA-GD-A76B-01 4 114823588 114823588 C A ARSJ Nonsense_Mutation p.G548* 0.32 TCGA-GD-A76B-01 4 144134960 144134960 G T USP38 Nonsense_Mutation p.E611* 0.28 TCGA-GD-A76B-01 4 39506909 39506909 C T UGDH Silent p.R373R 0.22 TCGA-GD-A76B-01 4 55569979 55569979 T G KIT Silent p.V282V 0.07 TCGA-GD-A76B-01 4 72400023 72400023 C T SLC4A4 Missense_Mutation p.P787L 0.33 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 4 73205249 73205249 C G ADAMTS3 Missense_Mutation p.E275Q 0.14 deleterious(0.01) possibly_damaging(0.641) TCGA-GD-A76B-01 4 86491847 86491847 C G ARHGAP24 Missense_Mutation p.F51L 0.30 deleterious(0) benign(0.174) TCGA-GD-A76B-01 4 88996751 88996751 C T PKD2 Nonsense_Mutation p.Q938* 0.27 TCGA-GD-A76B-01 5 134002573 134002573 C T SEC24A Missense_Mutation p.P209L 0.18 deleterious(0.05) possibly_damaging(0.743) TCGA-GD-A76B-01 5 137426630 137426630 C T WNT8A Silent p.V308V 0.33 TCGA-GD-A76B-01 5 139885448 139885448 T C ANKHD1 Silent p.R1134R 0.13 TCGA-GD-A76B-01 5 169028406 169028406 C G SPDL1 Missense_Mutation p.Q483E 0.16 tolerated(1) benign(0.002) TCGA-GD-A76B-01 5 172447839 172447839 C T ATP6V0E1 Intron 0.08 TCGA-GD-A76B-01 5 64079685 64079685 G A CWC27 Missense_Mutation p.R92H 0.12 deleterious(0) possibly_damaging(0.515) TCGA-GD-A76B-01 5 72865329 72865329 C T UTP15 Missense_Mutation p.H126Y 0.20 deleterious(0.03) benign(0.077) TCGA-GD-A76B-01 5 92923700 92923700 G T NR2F1 Missense_Mutation p.G181C 0.25 tolerated(0.24) benign(0.016) TCGA-GD-A76B-01 6 109827600 109827600 C G AK9 Missense_Mutation p.W1593C 0.20 deleterious(0) probably_damaging(0.933) TCGA-GD-A76B-01 6 11575764 11575764 C G TMEM170B Missense_Mutation p.I123M 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-GD-A76B-01 6 12123690 12123690 G A HIVEP1 Missense_Mutation p.G1221E 0.26 tolerated(0.11) possibly_damaging(0.89) TCGA-GD-A76B-01 6 146755708 146755708 G C GRM1 Missense_Mutation p.E1121Q 0.08 tolerated_low_confidence(0.36) benign(0.027) TCGA-GD-A76B-01 6 159262996 159262996 C T OSTCP1 RNA 0.21 TCGA-GD-A76B-01 6 24403244 24403244 C G MRS2 5'UTR 0.23 TCGA-GD-A76B-01 6 24418452 24418452 T G MRS2 Missense_Mutation p.I326S 0.22 deleterious(0) probably_damaging(0.956) TCGA-GD-A76B-01 6 31846802 31846802 C T SLC44A4 5'Flank 0.10 TCGA-GD-A76B-01 6 36336705 36336705 C A ETV7 Splice_Site p.X269_splice 0.27 TCGA-GD-A76B-01 6 39545860 39545860 C G KIF6 Missense_Mutation p.E385Q 0.25 deleterious(0.05) benign(0.077) TCGA-GD-A76B-01 6 52268628 52268628 C T PAQR8 Missense_Mutation p.P206L 0.16 tolerated(0.14) probably_damaging(0.997) TCGA-GD-A76B-01 6 71185219 71185219 C T FAM135A Silent p.I88I 0.17 TCGA-GD-A76B-01 6 73835139 73835139 A C KCNQ5 Intron 0.17 TCGA-GD-A76B-01 6 87969936 87969936 C G ZNF292 Missense_Mutation p.H2197D 0.28 deleterious(0) probably_damaging(0.999) TCGA-GD-A76B-01 6 90359844 90359844 C G MDN1 Missense_Mutation p.D5369H 0.08 unknown(0) TCGA-GD-A76B-01 6 94068112 94068112 A G EPHA7 Missense_Mutation p.Y284H 0.19 deleterious(0.03) probably_damaging(0.931) TCGA-GD-A76B-01 7 100373015 100373015 A G ZAN Missense_Mutation p.I1948V 0.26 unknown(0) TCGA-GD-A76B-01 7 100676991 100676991 G A MUC17 Missense_Mutation p.S765N 0.12 unknown(0) TCGA-GD-A76B-01 7 102604026 102604026 C G FBXL13 Missense_Mutation p.L226F 0.17 deleterious(0) probably_damaging(0.998) TCGA-GD-A76B-01 7 110764477 110764477 C G LRRN3 Missense_Mutation p.S550C 0.19 deleterious(0) probably_damaging(0.946) TCGA-GD-A76B-01 7 122821104 122821104 C T SLC13A1 Missense_Mutation p.E51K 0.08 deleterious(0) probably_damaging(1) TCGA-GD-A76B-01 7 156743089 156743089 C T NOM1 Silent p.L220L 0.17 TCGA-GD-A76B-01 7 35050977 35050977 C G DPY19L1 Missense_Mutation p.R139T 0.11 deleterious(0) probably_damaging(0.989) TCGA-GD-A76B-01 7 38299733 38299733 G A TRGC1 Silent p.L160L 0.33 TCGA-GD-A76B-01 7 43664257 43664257 C A STK17A Nonsense_Mutation p.S354* 0.18 TCGA-GD-A76B-01 7 4800834 4800834 C T FOXK1 Silent p.L612L 0.18 TCGA-GD-A76B-01 7 72419140 72419140 G A POM121 3'UTR 0.15 TCGA-GD-A76B-01 7 77004396 77004396 G C GSAP Nonsense_Mutation p.S255* 0.32 TCGA-GD-A76B-01 7 87160643 87160643 C T ABCB1 Silent p.L884L 0.22 TCGA-GD-A76B-01 7 87160653 87160653 C A ABCB1 Missense_Mutation p.G881V 0.20 deleterious(0) probably_damaging(0.994) TCGA-GD-A76B-01 7 89874733 89874733 C G C7orf63 5'UTR 0.17 TCGA-GD-A76B-01 7 97822687 97822687 G A LMTK2 Silent p.S970S 0.17 TCGA-GD-A76B-01 8 110099824 110099824 C T TRHR Missense_Mutation p.T28I 0.41 deleterious(0) possibly_damaging(0.866) TCGA-GD-A76B-01 8 114389078 114389078 C T CSMD3 Intron 0.06 TCGA-GD-A76B-01 8 120756538 120756538 C T TAF2 Silent p.P1068P 0.40 TCGA-GD-A76B-01 8 131172136 131172136 C T ASAP1 Silent p.K328K 0.26 TCGA-GD-A76B-01 8 145727029 145727029 C T PPP1R16A Missense_Mutation p.P444S 0.55 tolerated(0.28) benign(0.004) TCGA-GD-A76B-01 8 41526055 41526055 C T ANK1 Silent p.S1749S 0.26 TCGA-GD-A76B-01 8 41526063 41526063 C G ANK1 Missense_Mutation p.D1747H 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.521) TCGA-GD-A76B-01 8 48887453 48887453 C T MCM4 Missense_Mutation p.R766W 0.27 deleterious(0) probably_damaging(0.996) TCGA-GD-A76B-01 8 61139440 61139440 G T CA8 Missense_Mutation p.Q190K 0.17 tolerated(0.92) benign(0.008) TCGA-GD-A76B-01 8 72967993 72967993 T A TRPA1 Missense_Mutation p.N431I 0.30 tolerated(0.1) probably_damaging(1) TCGA-GD-A76B-01 8 86027790 86027790 G C LRRCC1 Missense_Mutation p.D301H 0.60 deleterious(0) benign(0.071) TCGA-GD-A76B-01 8 88365950 88365950 C A CNBD1 Missense_Mutation p.F413L 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-GD-A76B-01 9 113205985 113205985 C G SVEP1 Silent p.V1493V 0.21 TCGA-GD-A76B-01 9 125424779 125424779 C G OR1L1 Missense_Mutation p.P262R 0.06 deleterious(0) probably_damaging(0.999) TCGA-GD-A76B-01 9 127118944 127118944 G A PSMB7 Intron 0.31 TCGA-GD-A76B-01 9 130236155 130236155 G A LRSAM1 Missense_Mutation p.R232Q 0.19 tolerated(0.62) benign(0) TCGA-GD-A76B-01 9 130931351 130931351 C T CIZ1 Missense_Mutation p.E759K 0.28 deleterious(0.04) benign(0.423) TCGA-GD-A76B-01 9 131343206 131343206 C T SPTAN1 Silent p.T443T 0.10 TCGA-GD-A76B-01 9 140777294 140777294 G C CACNA1B Silent p.R163R 0.10 TCGA-GD-A76B-01 9 140938263 140938263 G A CACNA1B Silent p.K1108K 0.21 TCGA-GD-A76B-01 9 18721542 18721542 G A ADAMTSL1 Missense_Mutation p.E629K 0.23 deleterious(0) probably_damaging(0.98) TCGA-GD-A76B-01 9 95077805 95077805 C T NOL8 Missense_Mutation p.D368N 0.11 tolerated(1) benign(0) TCGA-GD-A76B-01 X 114953273 114953273 C T RP1-241P17.4 Missense_Mutation p.G93S 0.15 deleterious(0.04) benign(0.339) TCGA-GD-A76B-01 X 118724536 118724536 C G NKRF Silent p.R299R 0.11 TCGA-GD-A76B-01 X 153670439 153670439 G A GDI1 Intron 0.13 TCGA-GD-A76B-01 X 154010078 154010078 C G MPP1 Splice_Site p.X316_splice 0.05 TCGA-GD-A76B-01 X 23701817 23701817 G A PRDX4 Missense_Mutation p.E254K 0.08 tolerated(0.59) benign(0.009) TCGA-GD-A76B-01 X 2658837 2658837 G C CD99 Missense_Mutation p.E184Q 0.18 tolerated(0.41) benign(0.403) TCGA-GD-A76B-01 X 299630 299630 C A PPP2R3B Silent p.G451G 0.16 TCGA-GD-A76B-01 X 30327072 30327072 C T NR0B1 Missense_Mutation p.E137K 0.15 deleterious_low_confidence(0.02) benign(0.211) TCGA-GD-A76B-01 X 44929469 44929469 G A KDM6A Missense_Mutation p.E857K 0.18 tolerated_low_confidence(0.57) benign(0.003) TCGA-GD-A76B-01 X 47004013 47004013 G A NDUFB11 Silent p.L22L 0.25 TCGA-GD-A76B-01 X 49851524 49851524 G T CLCN5 Missense_Mutation p.M518I 0.17 tolerated(0.99) benign(0.008) TCGA-GD-A76B-01 X 53574942 53574942 A G HUWE1 Missense_Mutation p.I3443T 0.12 benign(0.152) TCGA-GD-A76B-01 X 55515340 55515340 G A USP51 Silent p.S11S 0.12 TCGA-GD-A76B-01 X 73963494 73963494 C A KIAA2022 Nonsense_Mutation p.E300* 0.19 TCGA-GD-A76B-01 X 80373935 80373935 G A HMGN5 Missense_Mutation p.S42L 0.18 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-GU-A42P-01 10 134230628 134230628 G A PWWP2B 3'UTR 0.46 TCGA-GU-A42P-01 10 135076679 135076679 C A ADAM8 Missense_Mutation p.G819V 0.20 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-GU-A42P-01 10 15145329 15145329 C G RPP38 Missense_Mutation p.Q6E 0.09 deleterious_low_confidence(0.04) probably_damaging(0.989) TCGA-GU-A42P-01 10 16893288 16893288 T A CUBN Silent p.T3203T 0.29 TCGA-GU-A42P-01 10 17362910 17362910 G C ST8SIA6 Silent p.L388L 0.20 TCGA-GU-A42P-01 10 18276556 18276556 C A SLC39A12 Missense_Mutation p.D415E 0.16 deleterious(0.05) probably_damaging(0.973) TCGA-GU-A42P-01 10 50959989 50959989 G A OGDHL Silent p.F211F 0.18 TCGA-GU-A42P-01 10 51581337 51581337 C G NCOA4 Missense_Mutation p.L163V 0.22 deleterious(0) probably_damaging(0.999) TCGA-GU-A42P-01 10 63957777 63957777 C T RTKN2 Missense_Mutation p.E574K 0.53 tolerated(0.35) benign(0.002) TCGA-GU-A42P-01 10 85993980 85993980 C T LRIT1 Silent p.L248L 0.19 TCGA-GU-A42P-01 11 101785878 101785878 G T KIAA1377 5'UTR 0.29 TCGA-GU-A42P-01 11 116730169 116730169 G C SIK3 Silent p.V753V 0.31 TCGA-GU-A42P-01 11 118403109 118403109 C A TMEM25 Silent p.L105L 0.32 TCGA-GU-A42P-01 11 119050748 119050748 C A NLRX1 Nonsense_Mutation p.S673* 0.27 TCGA-GU-A42P-01 11 119212452 119212452 A C MFRP Missense_Mutation p.F516V 0.13 deleterious(0.02) probably_damaging(1) TCGA-GU-A42P-01 11 1272042 1272042 G A MUC5B Silent p.G4644G 0.26 TCGA-GU-A42P-01 11 19251089 19251089 C G E2F8 Missense_Mutation p.R602T 0.31 tolerated(0.06) benign(0.005) TCGA-GU-A42P-01 11 3249723 3249723 G A MRGPRE Missense_Mutation p.R102C 0.66 tolerated(0.07) probably_damaging(0.997) TCGA-GU-A42P-01 11 40136235 40136235 G C LRRC4C Missense_Mutation p.I536M 0.45 deleterious(0) probably_damaging(0.954) TCGA-GU-A42P-01 11 58274928 58274928 G A OR5B21 Silent p.F217F 0.34 TCGA-GU-A42P-01 11 5969525 5969525 C G OR56A3 3'UTR 0.09 TCGA-GU-A42P-01 11 64900685 64900685 C T SYVN1 Silent p.L57L 0.11 TCGA-GU-A42P-01 11 65793585 65793585 C T CATSPER1 Missense_Mutation p.R89K 0.51 tolerated(0.53) benign(0.002) TCGA-GU-A42P-01 11 6891396 6891396 C T OR10A2 Silent p.F137F 0.38 TCGA-GU-A42P-01 11 72297215 72297215 C A PDE2A Nonsense_Mutation p.E361* 0.33 TCGA-GU-A42P-01 11 77378258 77378258 C G RSF1 Missense_Mutation p.E1344Q 0.13 deleterious_low_confidence(0.01) benign(0.268) TCGA-GU-A42P-01 11 82924110 82924110 C T ANKRD42 Intron 0.39 TCGA-GU-A42P-01 12 104459993 104459993 G T HCFC2 Missense_Mutation p.G71V 0.12 deleterious(0) probably_damaging(0.996) TCGA-GU-A42P-01 12 10570972 10570972 G C KLRC3 Missense_Mutation p.L153V 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-GU-A42P-01 12 109306434 109306434 C T SVOP Silent p.L443L 0.39 TCGA-GU-A42P-01 12 110503733 110503733 C T C12orf76 5'UTR 0.17 TCGA-GU-A42P-01 12 12006395 12006395 G T ETV6 Silent p.L121L 0.17 TCGA-GU-A42P-01 12 120260720 120260720 G C CIT Missense_Mutation p.Q339E 0.12 tolerated(0.05) benign(0.017) TCGA-GU-A42P-01 12 12043913 12043914 - A ETV6 Frame_Shift_Ins p.D432Rfs*13 0.23 TCGA-GU-A42P-01 12 120995412 120995412 G C RNF10 Missense_Mutation p.K298N 0.10 deleterious(0.01) possibly_damaging(0.536) TCGA-GU-A42P-01 12 121416586 121416586 G C HNF1A Silent p.L5L 0.13 TCGA-GU-A42P-01 12 121454196 121454196 C G C12orf43 Missense_Mutation p.E28Q 0.17 deleterious(0.01) possibly_damaging(0.584) TCGA-GU-A42P-01 12 122618182 122618182 G A MLXIP Silent p.L460L 0.43 TCGA-GU-A42P-01 12 123270332 123270332 C T CCDC62 Nonsense_Mutation p.R155* 0.11 TCGA-GU-A42P-01 12 133378355 133378355 G C GOLGA3 Missense_Mutation p.Q600E 0.05 deleterious(0) probably_damaging(0.995) TCGA-GU-A42P-01 12 13716613 13716613 G A GRIN2B Missense_Mutation p.H1187Y 0.14 tolerated_low_confidence(1) benign(0.369) TCGA-GU-A42P-01 12 51846009 51846009 G C SLC4A8 Missense_Mutation p.E127Q 0.11 deleterious(0.01) benign(0.329) TCGA-GU-A42P-01 12 51868139 51868139 C T SLC4A8 Silent p.L640L 0.12 TCGA-GU-A42P-01 12 59284535 59284535 C T LRIG3 Missense_Mutation p.E143K 0.33 tolerated(0.86) benign(0.027) TCGA-GU-A42P-01 12 64505569 64505569 G T SRGAP1 Missense_Mutation p.M649I 0.34 deleterious(0) probably_damaging(0.932) TCGA-GU-A42P-01 12 69103062 69103062 G T NUP107 Missense_Mutation p.Q258H 0.36 deleterious(0.01) benign(0.098) TCGA-GU-A42P-01 12 70150216 70150216 A G RAB3IP Missense_Mutation p.T111A 0.40 tolerated_low_confidence(0.41) benign(0.002) TCGA-GU-A42P-01 13 25479559 25479559 A G CENPJ Silent p.L873L 0.49 TCGA-GU-A42P-01 13 26411384 26411384 C G ATP8A2 Silent p.L946L 0.20 TCGA-GU-A42P-01 13 33679654 33679654 C T STARD13 3'UTR 0.11 TCGA-GU-A42P-01 13 41768192 41768192 C G KBTBD7 Missense_Mutation p.E68Q 0.82 tolerated(0.06) probably_damaging(0.96) TCGA-GU-A42P-01 13 92797147 92797147 G A GPC5 Missense_Mutation p.G489D 0.22 tolerated(0.15) benign(0.086) TCGA-GU-A42P-01 13 92797148 92797148 C A GPC5 Silent p.G489G 0.22 TCGA-GU-A42P-01 13 99378462 99378462 C T SLC15A1 Missense_Mutation p.A54T 0.66 tolerated(0.26) benign(0.017) TCGA-GU-A42P-01 14 105353168 105353168 C T CEP170B Silent p.L864L 0.41 TCGA-GU-A42P-01 14 21829254 21829254 C T SUPT16H Missense_Mutation p.E638K 0.09 deleterious(0) probably_damaging(0.994) TCGA-GU-A42P-01 14 24877523 24877523 C T NYNRIN Missense_Mutation p.S216F 0.33 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-GU-A42P-01 14 45432618 45432618 G A FAM179B Missense_Mutation p.E332K 0.28 tolerated_low_confidence(0.19) benign(0.281) TCGA-GU-A42P-01 14 58605154 58605154 G C C14orf37 Missense_Mutation p.S308C 0.51 deleterious(0) possibly_damaging(0.843) TCGA-GU-A42P-01 14 64916173 64916173 G A MTHFD1 Missense_Mutation p.E764K 0.07 tolerated(0.36) benign(0.003) TCGA-GU-A42P-01 14 64953634 64953634 G C ZBTB25 3'UTR 0.30 TCGA-GU-A42P-01 14 73578279 73578279 G C RBM25 Missense_Mutation p.K687N 0.33 benign(0.403) TCGA-GU-A42P-01 14 86088175 86088175 A G FLRT2 Missense_Mutation p.N106S 0.08 tolerated(0.06) possibly_damaging(0.776) TCGA-GU-A42P-01 14 91776267 91776267 C T CCDC88C Missense_Mutation p.E934K 0.36 deleterious(0) possibly_damaging(0.806) TCGA-GU-A42P-01 14 96777901 96777901 T C ATG2B Missense_Mutation p.K1323R 0.63 deleterious(0.01) benign(0.007) TCGA-GU-A42P-01 15 22990182 22990182 G A CYFIP1 Silent p.L934L 0.16 TCGA-GU-A42P-01 15 38793449 38793449 G A RASGRP1 Silent p.F526F 0.10 TCGA-GU-A42P-01 15 43086951 43086951 C T TTBK2 Missense_Mutation p.E291K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-GU-A42P-01 15 49076266 49076266 G A CEP152 Nonsense_Mutation p.Q409* 0.14 TCGA-GU-A42P-01 15 56032682 56032682 C G PRTG Missense_Mutation p.E99Q 0.19 tolerated(0.12) probably_damaging(0.96) TCGA-GU-A42P-01 15 65490152 65490152 G A CILP Silent p.V824V 0.07 TCGA-GU-A42P-01 16 20818356 20818356 G A AC004381.6 Silent p.G27G 0.65 TCGA-GU-A42P-01 16 2489766 2489766 G A CCNF Missense_Mutation p.R239Q 0.12 tolerated(0.07) probably_damaging(0.924) TCGA-GU-A42P-01 16 2812362 2812362 G A SRRM2 Silent p.R611R 0.08 TCGA-GU-A42P-01 16 30964592 30964592 G A ORAI3 Silent p.L105L 0.06 TCGA-GU-A42P-01 16 30976109 30976109 C T SETD1A Missense_Mutation p.S349L 0.05 benign(0.017) TCGA-GU-A42P-01 16 66946169 66946169 C T CDH16 Silent p.G508G 0.18 TCGA-GU-A42P-01 16 68112712 68112712 C T DUS2 Silent p.G435G 0.30 TCGA-GU-A42P-01 16 69681446 69681446 C G NFAT5 Missense_Mutation p.Q257E 0.09 probably_damaging(0.966) TCGA-GU-A42P-01 16 70415576 70415576 C T ST3GAL2 3'UTR 0.62 TCGA-GU-A42P-01 16 70546183 70546183 C T COG4 Missense_Mutation p.E233K 0.36 tolerated(0.18) benign(0.287) TCGA-GU-A42P-01 16 78064695 78064695 G A CLEC3A Missense_Mutation p.R193H 0.32 deleterious(0.01) benign(0.013) TCGA-GU-A42P-01 16 9857275 9857275 G A GRIN2A Missense_Mutation p.R1376C 0.12 tolerated(0.05) probably_damaging(0.94) TCGA-GU-A42P-01 17 11687744 11687744 C T DNAH9 Missense_Mutation p.P2650L 0.06 benign(0.102) TCGA-GU-A42P-01 17 19835115 19835115 T A AKAP10 Intron 0.80 TCGA-GU-A42P-01 17 26108095 26108095 G A NOS2 Silent p.I277I 0.07 TCGA-GU-A42P-01 17 26925562 26925562 G A SPAG5 Missense_Mutation p.S48L 0.09 deleterious_low_confidence(0) possibly_damaging(0.814) TCGA-GU-A42P-01 17 27421746 27421746 G T MYO18A Silent p.L1544L 0.06 TCGA-GU-A42P-01 17 28849408 28849408 C T GOSR1 3'UTR 0.10 TCGA-GU-A42P-01 17 33521251 33521251 G T SLC35G3 Missense_Mutation p.R26S 0.08 tolerated(0.69) benign(0.001) TCGA-GU-A42P-01 17 34943603 34943603 G C GGNBP2 Missense_Mutation p.Q606H 0.11 tolerated_low_confidence(0.56) benign(0.366) TCGA-GU-A42P-01 17 3495468 3495468 G A TRPV1 Silent p.F59F 0.13 TCGA-GU-A42P-01 17 36104534 36104534 G A HNF1B Silent p.L114L 0.10 TCGA-GU-A42P-01 17 37576007 37576007 G A MED1 Silent p.L420L 0.06 TCGA-GU-A42P-01 17 38609277 38609277 C G IGFBP4 Silent p.P130P 0.05 TCGA-GU-A42P-01 17 39913896 39913896 G A JUP Silent p.N638N 0.36 TCGA-GU-A42P-01 17 40345071 40345071 G A GHDC Intron 0.06 TCGA-GU-A42P-01 17 41958942 41958942 G A MPP2 Missense_Mutation p.H233Y 0.33 tolerated(0.45) probably_damaging(0.999) TCGA-GU-A42P-01 17 42153582 42153582 G A G6PC3 3'UTR 0.11 TCGA-GU-A42P-01 17 47918938 47918938 G C TAC4 Missense_Mutation p.L76V 0.09 tolerated(0.13) benign(0.233) TCGA-GU-A42P-01 17 56423506 56423506 G C SUPT4H1 3'UTR 0.33 TCGA-GU-A42P-01 17 61417585 61417585 C G TANC2 Missense_Mutation p.L493V 0.31 tolerated(0.09) benign(0.058) TCGA-GU-A42P-01 17 61611481 61611481 G C KCNH6 Missense_Mutation p.D304H 0.12 deleterious(0) probably_damaging(0.983) TCGA-GU-A42P-01 17 62019051 62019051 C T SCN4A Missense_Mutation p.E1531K 0.10 deleterious(0) benign(0.426) TCGA-GU-A42P-01 17 66036859 66036859 G A KPNA2 Silent p.Q93Q 0.11 TCGA-GU-A42P-01 17 67023135 67023135 C A ABCA9 Nonsense_Mutation p.E678* 0.16 TCGA-GU-A42P-01 17 67023240 67023240 C A ABCA9 Nonsense_Mutation p.E643* 0.10 TCGA-GU-A42P-01 17 72613536 72613536 G A CD300E Nonsense_Mutation p.Q37* 0.11 TCGA-GU-A42P-01 17 72740491 72740491 G T RAB37 Silent p.V142V 0.12 TCGA-GU-A42P-01 17 73888485 73888485 C T TRIM65 Missense_Mutation p.E203K 0.09 tolerated(0.1) benign(0.009) TCGA-GU-A42P-01 17 7577550 7577550 C T TP53 Missense_Mutation p.G244D 0.94 deleterious(0) probably_damaging(1) TCGA-GU-A42P-01 17 76133860 76133860 C G TMC8 Silent p.T438T 0.13 TCGA-GU-A42P-01 17 76451912 76451912 G T DNAH17 Silent p.V3314V 0.38 TCGA-GU-A42P-01 17 7804619 7804619 G A CHD3 Missense_Mutation p.G1119R 0.15 probably_damaging(0.953) TCGA-GU-A42P-01 17 79164775 79164775 C A AZI1 Nonsense_Mutation p.E959* 0.05 TCGA-GU-A42P-01 17 79847068 79847068 G A ALYREF Silent p.V176V 0.12 TCGA-GU-A42P-01 17 79848581 79848581 G C ALYREF Nonsense_Mutation p.S125* 0.10 TCGA-GU-A42P-01 17 79970159 79970159 G A ASPSCR1 Silent p.Q451Q 0.32 TCGA-GU-A42P-01 17 80573890 80573890 C A WDR45B Missense_Mutation p.D314Y 0.07 deleterious(0) probably_damaging(0.996) TCGA-GU-A42P-01 18 12512468 12512468 C T SPIRE1 Silent p.L264L 0.13 TCGA-GU-A42P-01 18 22056994 22056994 C T HRH4 Missense_Mutation p.P214L 0.06 tolerated(0.09) benign(0.076) TCGA-GU-A42P-01 18 23845165 23845165 G A TAF4B Silent p.P125P 0.40 TCGA-GU-A42P-01 18 43664252 43664252 G C ATP5A1 Missense_Mutation p.A553G 0.54 deleterious_low_confidence(0.01) benign(0.105) TCGA-GU-A42P-01 18 61305279 61305279 G A SERPINB4 Missense_Mutation p.H283Y 0.33 tolerated(0.89) benign(0.006) TCGA-GU-A42P-01 18 672911 672911 G C TYMS Missense_Mutation p.E286Q 0.23 tolerated(0.26) benign(0.017) TCGA-GU-A42P-01 18 7038884 7038884 G A LAMA1 Silent p.N496N 0.26 TCGA-GU-A42P-01 18 8825652 8825652 G C SOGA2 Missense_Mutation p.E1382Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-GU-A42P-01 19 11488621 11488621 G A EPOR 3'UTR 0.36 TCGA-GU-A42P-01 19 13419050 13419050 G C CACNA1A Silent p.L599L 0.52 TCGA-GU-A42P-01 19 14517987 14517987 C G CD97 Silent p.L774L 0.16 TCGA-GU-A42P-01 19 14991482 14991482 G C OR7A17 Nonsense_Mutation p.S229* 0.19 TCGA-GU-A42P-01 19 17265170 17265170 G C MYO9B Missense_Mutation p.E382Q 0.07 tolerated(0.06) benign(0.283) TCGA-GU-A42P-01 19 1811700 1811700 G T ATP8B3 Silent p.T12T 0.45 TCGA-GU-A42P-01 19 18965421 18965421 G C UPF1 Missense_Mutation p.E390Q 0.04 deleterious(0.01) possibly_damaging(0.457) TCGA-GU-A42P-01 19 3179747 3179747 C T S1PR4 Silent p.L319L 0.06 TCGA-GU-A42P-01 19 36271711 36271711 G A ARHGAP33 Silent p.L274L 0.13 TCGA-GU-A42P-01 19 37853564 37853564 C T HKR1 Silent p.I289I 0.33 TCGA-GU-A42P-01 19 39395894 39395894 T G NFKBIB Missense_Mutation p.L113R 0.19 deleterious(0) probably_damaging(1) TCGA-GU-A42P-01 19 40710488 40710488 G A MAP3K10 Silent p.L320L 0.15 TCGA-GU-A42P-01 19 41515946 41515946 C T CYP2B6 Silent p.L290L 0.15 TCGA-GU-A42P-01 19 44932541 44932541 G T ZNF229 Missense_Mutation p.F805L 0.30 deleterious(0) benign(0.25) TCGA-GU-A42P-01 19 46812516 46812516 G A HIF3A Missense_Mutation p.E224K 0.18 deleterious(0) possibly_damaging(0.684) TCGA-GU-A42P-01 19 49000815 49000815 C G LMTK3 Missense_Mutation p.E1200Q 0.19 unknown(0) TCGA-GU-A42P-01 19 4954700 4954700 C T UHRF1 RNA 0.16 TCGA-GU-A42P-01 19 51628955 51628955 C - SIGLEC9 Frame_Shift_Del p.P176Lfs*2 0.22 TCGA-GU-A42P-01 19 57765394 57765394 G A ZNF805 Missense_Mutation p.E403K 0.16 deleterious(0) probably_damaging(0.937) TCGA-GU-A42P-01 19 57765878 57765878 G C ZNF805 Missense_Mutation p.R564T 0.15 deleterious(0.03) benign(0.219) TCGA-GU-A42P-01 19 8495718 8495718 C T MARCH2 Silent p.I183I 0.15 TCGA-GU-A42P-01 19 8495727 8495727 C T MARCH2 Silent p.F186F 0.19 TCGA-GU-A42P-01 1 109730885 109730885 G A KIAA1324 Silent p.K376K 0.15 TCGA-GU-A42P-01 1 149369355 149369355 G C RP5-998N21.4 3'Flank 0.28 TCGA-GU-A42P-01 1 154471609 154471609 C T SHE Missense_Mutation p.D233N 0.11 deleterious(0) probably_damaging(0.973) TCGA-GU-A42P-01 1 154961196 154961196 G A FLAD1 Missense_Mutation p.E330K 0.78 tolerated(0.13) benign(0.013) TCGA-GU-A42P-01 1 155261666 155261666 G T PKLR Missense_Mutation p.A500D 0.09 tolerated(0.46) possibly_damaging(0.724) TCGA-GU-A42P-01 1 16577604 16577604 G A FBXO42 Missense_Mutation p.S572L 0.60 deleterious_low_confidence(0.03) benign(0.037) TCGA-GU-A42P-01 1 17355209 17355209 C T SDHB Missense_Mutation p.M103I 0.34 deleterious(0.01) benign(0.276) TCGA-GU-A42P-01 1 192627377 192627377 C T RGS13 Silent p.D58D 0.77 TCGA-GU-A42P-01 1 196715008 196715008 G A CFH Silent p.P1124P 0.72 TCGA-GU-A42P-01 1 197398624 197398624 G A CRB1 Missense_Mutation p.D908N 0.72 deleterious(0.04) benign(0.134) TCGA-GU-A42P-01 1 200971326 200971326 G A KIF21B Silent p.L455L 0.31 TCGA-GU-A42P-01 1 202097095 202097095 G A GPR37L1 Missense_Mutation p.C286Y 0.76 deleterious(0) probably_damaging(1) TCGA-GU-A42P-01 1 202878183 202878183 C T KLHL12 Missense_Mutation p.E263K 0.09 deleterious(0.04) benign(0.046) TCGA-GU-A42P-01 1 203832818 203832818 G A SNRPE Missense_Mutation p.E37K 0.29 deleterious(0.03) benign(0.309) TCGA-GU-A42P-01 1 206634915 206634915 G A SRGAP2 3'UTR 0.14 TCGA-GU-A42P-01 1 21546588 21546588 C T ECE1 Missense_Mutation p.E725K 0.16 tolerated(0.34) probably_damaging(0.997) TCGA-GU-A42P-01 1 223933095 223933095 G A CAPN2 Missense_Mutation p.E172K 0.36 deleterious(0.01) benign(0.006) TCGA-GU-A42P-01 1 22902778 22902778 G C EPHA8 Missense_Mutation p.M76I 0.16 deleterious(0.02) probably_damaging(0.985) TCGA-GU-A42P-01 1 234546208 234546208 G C TARBP1 Missense_Mutation p.Q1259E 0.12 tolerated(0.44) benign(0.008) TCGA-GU-A42P-01 1 23520622 23520622 G A HTR1D Missense_Mutation p.P31S 0.15 tolerated(0.48) benign(0.05) TCGA-GU-A42P-01 1 249151952 249151952 G C ZNF692 Intron 0.28 TCGA-GU-A42P-01 1 27092809 27092809 C T ARID1A Nonsense_Mutation p.Q944* 0.66 TCGA-GU-A42P-01 1 3807550 3807550 C T C1orf174 Silent p.V67V 0.09 TCGA-GU-A42P-01 1 38188817 38188817 G T EPHA10 Missense_Mutation p.T619K 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-GU-A42P-01 1 41218876 41218876 C T NFYC Silent p.I115I 0.18 TCGA-GU-A42P-01 1 43166588 43166588 G A YBX1 Missense_Mutation p.E293K 0.10 deleterious(0.02) possibly_damaging(0.757) TCGA-GU-A42P-01 1 47078804 47078804 C A MOB3C Missense_Mutation p.V116L 0.20 deleterious(0.02) benign(0.148) TCGA-GU-A42P-01 1 52499019 52499019 C T KTI12 Missense_Mutation p.E139K 0.17 tolerated_low_confidence(0.23) benign(0.006) TCGA-GU-A42P-01 1 7725070 7725070 C T CAMTA1 Silent p.L821L 0.28 TCGA-GU-A42P-01 1 77510251 77510251 G C ST6GALNAC5 Missense_Mutation p.K208N 0.17 probably_damaging(0.959) TCGA-GU-A42P-01 1 9784049 9784049 G A PIK3CD Missense_Mutation p.E873K 0.12 deleterious(0) probably_damaging(0.914) TCGA-GU-A42P-01 20 13850237 13850237 C T SEL1L2 Splice_Site p.X390_splice 0.35 TCGA-GU-A42P-01 20 25472002 25472002 C T NINL Silent p.L490L 0.07 TCGA-GU-A42P-01 20 31023456 31023456 G C ASXL1 Missense_Mutation p.E981Q 0.06 tolerated_low_confidence(0.46) benign(0.029) TCGA-GU-A42P-01 20 31291118 31291118 C T COMMD7 3'UTR 0.19 TCGA-GU-A42P-01 20 42907908 42907908 G A GDAP1L1 Missense_Mutation p.A358T 0.08 deleterious(0.03) probably_damaging(0.98) TCGA-GU-A42P-01 20 45920551 45920551 T C ZMYND8 Missense_Mutation p.T217A 0.50 deleterious(0.02) probably_damaging(0.937) TCGA-GU-A42P-01 20 45927673 45927673 G A ZMYND8 Missense_Mutation p.P85S 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-A42P-01 20 58571597 58571597 G A CDH26 Intron 0.18 TCGA-GU-A42P-01 20 5923241 5923241 C T TRMT6 Missense_Mutation p.E287K 0.12 tolerated(0.31) benign(0.371) TCGA-GU-A42P-01 20 60883174 60883174 G C ADRM1 Missense_Mutation p.E318D 0.17 tolerated(0.19) unknown(0) TCGA-GU-A42P-01 20 62298845 62298845 G A RTEL1 Missense_Mutation p.R237Q 0.31 deleterious(0) probably_damaging(0.978) TCGA-GU-A42P-01 20 7963212 7963212 C T TMX4 Missense_Mutation p.E246K 0.44 tolerated(0.08) benign(0.254) TCGA-GU-A42P-01 21 32638734 32638734 G C TIAM1 Silent p.L185L 0.07 TCGA-GU-A42P-01 21 34897137 34897137 C T GART Missense_Mutation p.E413K 0.05 tolerated(0.33) benign(0.008) TCGA-GU-A42P-01 21 34897162 34897162 C G GART Missense_Mutation p.K404N 0.07 tolerated(0.74) benign(0.001) TCGA-GU-A42P-01 21 42540362 42540362 G A BACE2 Missense_Mutation p.D58N 0.40 tolerated(0.5) benign(0.2) TCGA-GU-A42P-01 21 43803246 43803246 C A TMPRSS3 Silent p.S226S 0.31 TCGA-GU-A42P-01 22 19961659 19961659 C T ARVCF Silent p.Q688Q 0.10 TCGA-GU-A42P-01 22 37603331 37603331 G A SSTR3 Missense_Mutation p.S171L 0.16 deleterious(0) probably_damaging(1) TCGA-GU-A42P-01 22 39224455 39224455 G T NPTXR Silent p.T229T 0.28 TCGA-GU-A42P-01 2 10053352 10053352 A G TAF1B Silent p.K415K 0.42 TCGA-GU-A42P-01 2 107084704 107084704 G T RGPD3 Nonsense_Mutation p.S14* 0.24 TCGA-GU-A42P-01 2 130738076 130738076 C T RAB6C Missense_Mutation p.L130F 0.06 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-GU-A42P-01 2 132240420 132240420 G A TUBA3D Silent p.%3D 0.45 TCGA-GU-A42P-01 2 172216968 172216968 C G METTL8 Missense_Mutation p.E67Q 0.52 deleterious(0.03) possibly_damaging(0.786) TCGA-GU-A42P-01 2 202900171 202900171 G A FZD7 Silent p.S267S 0.04 TCGA-GU-A42P-01 2 203817341 203817341 G A CARF Silent p.Q122Q 0.54 TCGA-GU-A42P-01 2 210543358 210543358 G A MAP2 Missense_Mutation p.E109K 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-A42P-01 2 216289908 216289908 G C FN1 Silent p.V315V 0.59 TCGA-GU-A42P-01 2 220494121 220494121 C T SLC4A3 Missense_Mutation p.S158L 0.64 tolerated_low_confidence(0.33) benign(0.001) TCGA-GU-A42P-01 2 224822184 224822184 C T MRPL44 5'UTR 0.86 TCGA-GU-A42P-01 2 233271580 233271580 C G ALPPL2 5'UTR 0.71 TCGA-GU-A42P-01 2 236653473 236653473 G A AGAP1 Silent p.V176V 0.64 TCGA-GU-A42P-01 2 237276839 237276839 A G IQCA1 Missense_Mutation p.L556S 0.50 deleterious(0) probably_damaging(0.976) TCGA-GU-A42P-01 2 27681039 27681039 G C IFT172 Missense_Mutation p.Q977E 0.13 tolerated(0.05) benign(0.015) TCGA-GU-A42P-01 2 38975749 38975749 G A SRSF7 Missense_Mutation p.R145C 0.10 deleterious(0.01) unknown(0) TCGA-GU-A42P-01 2 74273774 74273774 G A TET3 Missense_Mutation p.E109K 0.51 tolerated(0.11) benign(0.03) TCGA-GU-A42P-01 2 74274034 74274034 G C TET3 Missense_Mutation p.Q195H 0.47 tolerated(0.11) benign(0.002) TCGA-GU-A42P-01 2 80530511 80530511 G A LRRTM1 Missense_Mutation p.S145L 0.37 deleterious(0) probably_damaging(0.992) TCGA-GU-A42P-01 2 86014100 86014100 C T ATOH8 3'UTR 0.59 TCGA-GU-A42P-01 2 86257321 86257321 C T POLR1A Missense_Mutation p.E1593K 0.39 tolerated(0.09) benign(0.217) TCGA-GU-A42P-01 2 89197299 89197299 C T IGKV5-2 Missense_Mutation p.P115L 0.88 deleterious(0) probably_damaging(0.991) TCGA-GU-A42P-01 3 10016100 10016100 C T EMC3 Nonsense_Mutation p.W127* 0.08 TCGA-GU-A42P-01 3 125843274 125843274 C G ALDH1L1 Missense_Mutation p.L617F 0.18 deleterious(0) probably_damaging(0.922) TCGA-GU-A42P-01 3 132241689 132241689 G T DNAJC13 Missense_Mutation p.M1897I 0.50 tolerated(0.52) benign(0) TCGA-GU-A42P-01 3 137843184 137843184 G A A4GNT Silent p.H315H 0.09 TCGA-GU-A42P-01 3 150127842 150127842 G T TSC22D2 Silent p.A235A 0.14 TCGA-GU-A42P-01 3 156254482 156254482 G A KCNAB1 Silent p.E402E 0.12 TCGA-GU-A42P-01 3 172351622 172351622 G A NCEH1 Silent p.S330S 0.66 TCGA-GU-A42P-01 3 178936067 178936067 C A PIK3CA Silent p.R537R 0.24 TCGA-GU-A42P-01 3 180688077 180688077 G A FXR1 Missense_Mutation p.D512N 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-A42P-01 3 195711504 195711504 G C SDHAP1 RNA 0.14 TCGA-GU-A42P-01 3 33110330 33110330 G A GLB1 Silent p.I126I 0.08 TCGA-GU-A42P-01 3 36547283 36547283 T C STAC Silent p.L293L 0.55 TCGA-GU-A42P-01 3 386331 386331 G A CHL1 Missense_Mutation p.E263K 0.11 tolerated(0.58) benign(0.002) TCGA-GU-A42P-01 3 40529748 40529748 C G ZNF619 3'UTR 0.24 TCGA-GU-A42P-01 3 47447839 47447839 G C PTPN23 Missense_Mutation p.E191Q 0.12 unknown(0) TCGA-GU-A42P-01 3 49756392 49756392 G A AMIGO3 Silent p.L169L 0.10 TCGA-GU-A42P-01 3 58520155 58520155 G T ACOX2 Missense_Mutation p.F85L 0.13 tolerated(0.2) benign(0.003) TCGA-GU-A42P-01 3 99567513 99567513 G A FILIP1L Nonsense_Mutation p.Q1003* 0.13 TCGA-GU-A42P-01 3 9989686 9989686 C T PRRT3 Splice_Site p.X391_splice 0.20 TCGA-GU-A42P-01 4 123178471 123178471 G A KIAA1109 Nonsense_Mutation p.W2147* 0.66 TCGA-GU-A42P-01 4 145581085 145581085 G C HHIP Intron 0.50 TCGA-GU-A42P-01 4 57350905 57350905 G A SRP72 Missense_Mutation p.E321K 0.06 deleterious(0.02) benign(0.24) TCGA-GU-A42P-01 4 62897274 62897274 C G LPHN3 Missense_Mutation p.F1111L 0.57 tolerated(0.36) possibly_damaging(0.796) TCGA-GU-A42P-01 4 7436240 7436240 G A PSAPL1 Missense_Mutation p.R123C 0.17 deleterious(0.01) benign(0.132) TCGA-GU-A42P-01 4 80329310 80329310 C A GK2 Silent p.A15A 0.14 TCGA-GU-A42P-01 4 88767147 88767147 C T MEPE Missense_Mutation p.P376L 0.74 tolerated(0.27) benign(0.031) TCGA-GU-A42P-01 5 127474291 127474291 G A SLC12A2 Missense_Mutation p.E471K 0.17 tolerated(0.17) benign(0.314) TCGA-GU-A42P-01 5 140242692 140242692 G A AC005609.1 Missense_Mutation p.S95L 0.23 deleterious_low_confidence(0) benign(0) TCGA-GU-A42P-01 5 141014416 141014416 G A HDAC3 Silent p.F81F 0.11 TCGA-GU-A42P-01 5 141325351 141325351 C T PCDH12 Silent p.L1050L 0.36 TCGA-GU-A42P-01 5 153056616 153056616 G A GRIA1 Silent p.R318R 0.13 TCGA-GU-A42P-01 5 153726790 153726790 G A GALNT10 Intron 0.19 TCGA-GU-A42P-01 5 154214471 154214471 C T FAXDC2 Missense_Mutation p.M24I 0.33 tolerated(0.28) benign(0.013) TCGA-GU-A42P-01 5 154307068 154307068 C T GEMIN5 Silent p.R319R 0.40 TCGA-GU-A42P-01 5 161988 161988 G A PLEKHG4B Missense_Mutation p.V504M 0.19 tolerated(0.34) benign(0.006) TCGA-GU-A42P-01 5 179228556 179228556 C T MGAT4B Missense_Mutation p.G156E 0.18 deleterious(0.03) possibly_damaging(0.827) TCGA-GU-A42P-01 5 179290728 179290728 G A TBC1D9B Missense_Mutation p.S1158L 0.33 deleterious_low_confidence(0.04) probably_damaging(0.966) TCGA-GU-A42P-01 5 180046731 180046731 C T FLT4 Missense_Mutation p.E861K 0.14 deleterious(0) probably_damaging(0.998) TCGA-GU-A42P-01 5 180046741 180046741 C T FLT4 Silent p.G857G 0.15 TCGA-GU-A42P-01 5 21975370 21975370 C G CDH12 Missense_Mutation p.R119T 0.14 deleterious(0) probably_damaging(1) TCGA-GU-A42P-01 5 2749764 2749764 G A IRX2 Silent p.L129L 0.13 TCGA-GU-A42P-01 5 33576289 33576289 G C ADAMTS12 Missense_Mutation p.S1281C 0.09 deleterious(0.02) possibly_damaging(0.711) TCGA-GU-A42P-01 5 41000405 41000405 C G MROH2B Missense_Mutation p.E1467Q 0.22 deleterious(0.04) benign(0.139) TCGA-GU-A42P-01 5 5460852 5460852 C T KIAA0947 Nonsense_Mutation p.R469* 0.10 TCGA-GU-A42P-01 5 55407419 55407419 C T ANKRD55 Missense_Mutation p.D386N 0.15 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GU-A42P-01 5 79279555 79279555 C T MTX3 Silent p.L236L 0.29 TCGA-GU-A42P-01 6 10730894 10730894 C G TMEM14C Missense_Mutation p.H112D 0.24 deleterious(0.01) benign(0.081) TCGA-GU-A42P-01 6 147684703 147684703 C T STXBP5 Silent p.I926I 0.26 TCGA-GU-A42P-01 6 152652257 152652257 C A SYNE1 Missense_Mutation p.M4521I 0.17 possibly_damaging(0.575) TCGA-GU-A42P-01 6 152652943 152652943 C T SYNE1 Missense_Mutation p.E4293K 0.15 benign(0.113) TCGA-GU-A42P-01 6 165749623 165749623 C T PDE10A Silent p.L752L 0.41 TCGA-GU-A42P-01 6 26032076 26032076 C T HIST1H3B Silent p.L71L 0.07 TCGA-GU-A42P-01 6 27791902 27791902 C T HIST1H4J 5'UTR 0.51 TCGA-GU-A42P-01 6 27799101 27799101 C T HIST1H4K Missense_Mutation p.D69N 0.28 deleterious(0.03) possibly_damaging(0.618) TCGA-GU-A42P-01 6 27806511 27806511 G A HIST1H2BN Silent p.K24K 0.43 TCGA-GU-A42P-01 6 27806606 27806606 C T HIST1H2BN Missense_Mutation p.S56L 0.09 deleterious_low_confidence(0.04) benign(0.057) TCGA-GU-A42P-01 6 27879041 27879041 G A OR2B2 Nonsense_Mutation p.Q353* 0.36 TCGA-GU-A42P-01 6 30128255 30128255 G A TRIM10 Silent p.H127H 0.61 TCGA-GU-A42P-01 6 31112514 31112514 G T CCHCR1 Nonsense_Mutation p.S706* 0.20 TCGA-GU-A42P-01 6 32036608 32036608 C T TNXB Missense_Mutation p.A1965T 0.14 probably_damaging(0.994) TCGA-GU-A42P-01 6 32151709 32151709 C T AGER Silent p.L36L 0.07 TCGA-GU-A42P-01 6 33232182 33232182 C T VPS52 Missense_Mutation p.R498H 0.21 tolerated(0.07) benign(0.132) TCGA-GU-A42P-01 6 33668284 33668284 G A UQCC2 Missense_Mutation p.R74C 0.46 tolerated(0.06) benign(0.06) TCGA-GU-A42P-01 6 36298193 36298193 G A C6orf222 Missense_Mutation p.S92L 0.22 tolerated(0.15) benign(0) TCGA-GU-A42P-01 6 41021206 41021206 G A APOBEC2 Silent p.E40E 0.18 TCGA-GU-A42P-01 6 46977360 46977360 A G GPR110 Missense_Mutation p.L604P 0.13 deleterious(0) probably_damaging(1) TCGA-GU-A42P-01 6 55924836 55924836 G A COL21A1 Missense_Mutation p.P863L 0.10 deleterious(0.02) benign(0.033) TCGA-GU-A42P-01 6 71011755 71011755 C A COL9A1 Missense_Mutation p.V13L 0.12 unknown(0) TCGA-GU-A42P-01 6 76558181 76558181 C T MYO6 Silent p.L337L 0.24 TCGA-GU-A42P-01 6 97720683 97720683 G A MMS22L Missense_Mutation p.S168L 0.35 deleterious(0) probably_damaging(0.99) TCGA-GU-A42P-01 7 100839124 100839124 G A MOGAT3 3'UTR 0.19 TCGA-GU-A42P-01 7 102312018 102312018 A G POLR2J2 Silent p.L11L 0.59 TCGA-GU-A42P-01 7 117828377 117828377 G A NAA38 Missense_Mutation p.E40K 0.17 tolerated(0.13) possibly_damaging(0.752) TCGA-GU-A42P-01 7 123269344 123269344 G C ASB15 Silent p.L432L 0.16 TCGA-GU-A42P-01 7 128038489 128038489 C T IMPDH1 Silent p.A351A 0.36 TCGA-GU-A42P-01 7 128483610 128483610 C T FLNC Silent p.V930V 0.07 TCGA-GU-A42P-01 7 138434049 138434049 G A ATP6V0A4 Missense_Mutation p.S348F 0.37 deleterious(0) probably_damaging(0.997) TCGA-GU-A42P-01 7 142176577 142176577 C G TRBV7-4 Missense_Mutation p.K33N 0.12 tolerated(0.09) benign(0.034) TCGA-GU-A42P-01 7 148112682 148112682 G A CNTNAP2 Missense_Mutation p.E1324K 0.06 deleterious(0.01) benign(0.119) TCGA-GU-A42P-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.27 TCGA-GU-A42P-01 7 150716448 150716448 G C ATG9B Missense_Mutation p.S326W 0.14 tolerated(0.05) possibly_damaging(0.824) TCGA-GU-A42P-01 7 150932442 150932442 G A CHPF2 Missense_Mutation p.R191H 0.27 deleterious(0.01) possibly_damaging(0.8) TCGA-GU-A42P-01 7 19184814 19184814 C T FERD3L Missense_Mutation p.E58K 0.16 tolerated(0.27) benign(0.231) TCGA-GU-A42P-01 7 19184846 19184846 C A FERD3L Missense_Mutation p.R47L 0.18 tolerated(0.26) benign(0.082) TCGA-GU-A42P-01 7 34125678 34125678 G C BMPER Silent p.S573S 0.30 TCGA-GU-A42P-01 7 38289119 38289119 A T TRGC2 Missense_Mutation p.I19N 0.12 deleterious(0) possibly_damaging(0.824) TCGA-GU-A42P-01 7 42004413 42004413 C T GLI3 Missense_Mutation p.G1420S 0.23 tolerated_low_confidence(0.19) benign(0.034) TCGA-GU-A42P-01 7 43918318 43918318 C T URGCP Silent p.G248G 0.16 TCGA-GU-A42P-01 7 45004594 45004594 G A MYO1G Missense_Mutation p.R826C 0.14 deleterious(0) probably_damaging(0.999) TCGA-GU-A42P-01 7 48451974 48451974 C G ABCA13 Missense_Mutation p.L4085V 0.25 benign(0.029) TCGA-GU-A42P-01 7 50468236 50468236 G C IKZF1 Missense_Mutation p.E449Q 0.16 deleterious(0.01) possibly_damaging(0.605) TCGA-GU-A42P-01 7 70254903 70254903 C T AUTS2 Missense_Mutation p.R901C 0.32 tolerated(0.08) probably_damaging(0.931) TCGA-GU-A42P-01 7 75156974 75156974 C T PMS2P3 RNA 0.21 TCGA-GU-A42P-01 7 94174871 94174871 C T CASD1 Silent p.L497L 0.38 TCGA-GU-A42P-01 7 99129156 99129156 G T ZKSCAN5 Nonsense_Mutation p.E602* 0.16 TCGA-GU-A42P-01 7 99129196 99129196 G C ZKSCAN5 Missense_Mutation p.R615T 0.11 tolerated(0.72) probably_damaging(0.999) TCGA-GU-A42P-01 7 99129479 99129479 G T ZKSCAN5 Missense_Mutation p.K709N 0.13 deleterious(0.01) possibly_damaging(0.776) TCGA-GU-A42P-01 7 99129543 99129543 G C ZKSCAN5 Missense_Mutation p.D731H 0.11 tolerated(0.24) benign(0.2) TCGA-GU-A42P-01 7 99129776 99129776 G A ZKSCAN5 Missense_Mutation p.M808I 0.17 tolerated(0.09) benign(0.038) TCGA-GU-A42P-01 8 105257240 105257240 G C RIMS2 Missense_Mutation p.R1144P 0.06 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-GU-A42P-01 8 11995006 11995006 C T USP17L2 Missense_Mutation p.E422K 0.33 tolerated(0.16) benign(0.442) TCGA-GU-A42P-01 8 133196544 133196544 C T KCNQ3 Missense_Mutation p.R183Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-GU-A42P-01 8 142228320 142228320 C T SLC45A4 Silent p.Q422Q 0.55 TCGA-GU-A42P-01 8 145947382 145947382 G C ZNF251 Missense_Mutation p.L555V 0.56 tolerated(0.06) benign(0.364) TCGA-GU-A42P-01 8 145948117 145948117 G A ZNF251 Nonsense_Mutation p.Q310* 0.47 TCGA-GU-A42P-01 8 17169029 17169029 C T MTMR7 Silent p.K364K 0.05 TCGA-GU-A42P-01 8 22880321 22880321 C G TNFRSF10B Missense_Mutation p.D396H 0.07 deleterious(0.03) possibly_damaging(0.771) TCGA-GU-A42P-01 8 24256486 24256486 G C ADAMDEC1 Missense_Mutation p.D288H 0.44 deleterious(0.04) benign(0) TCGA-GU-A42P-01 8 28385250 28385255 GAGAAG CAGAA FZD3 Frame_Shift_Del p.E325Qfs*18 0.26 TCGA-GU-A42P-01 8 3263579 3263579 C A CSMD1 Missense_Mutation p.V746F 0.32 probably_damaging(0.999) TCGA-GU-A42P-01 8 41397224 41397224 G C GINS4 Missense_Mutation p.E109Q 0.16 tolerated(0.07) benign(0.014) TCGA-GU-A42P-01 8 55372534 55372534 C T SOX17 Silent p.Y408Y 0.61 TCGA-GU-A42P-01 8 71619358 71619358 C G XKR9 Missense_Mutation p.L155V 0.10 deleterious(0.03) benign(0.182) TCGA-GU-A42P-01 8 87242216 87242216 G A SLC7A13 Silent p.L97L 0.12 TCGA-GU-A42P-01 9 101608351 101608351 C T GALNT12 Silent p.I517I 0.20 TCGA-GU-A42P-01 9 111819589 111819589 G C TMEM245 Missense_Mutation p.S579C 0.21 deleterious(0.02) possibly_damaging(0.649) TCGA-GU-A42P-01 9 125437730 125437730 G A OR1L3 Missense_Mutation p.G108R 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-GU-A42P-01 9 133993210 133993210 G A AIF1L Silent p.K116K 0.11 TCGA-GU-A42P-01 9 134021689 134021689 C A NUP214 Nonsense_Mutation p.S648* 0.43 TCGA-GU-A42P-01 9 136263158 136263158 C T C9orf96 Silent p.L353L 0.12 TCGA-GU-A42P-01 9 136509404 136509404 G A DBH Missense_Mutation p.R329H 0.14 deleterious(0.04) probably_damaging(0.973) TCGA-GU-A42P-01 9 136674200 136674200 C T VAV2 Missense_Mutation p.E210K 0.09 deleterious(0) probably_damaging(0.997) TCGA-GU-A42P-01 9 140446764 140446764 C G MRPL41 Silent p.L77L 0.09 TCGA-GU-A42P-01 9 21166300 21166300 G C IFNA21 Silent p.L104L 0.12 TCGA-GU-A42P-01 9 71395043 71395043 C A FAM122A 5'UTR 0.18 TCGA-GU-A42P-01 9 97218591 97218591 C G HIATL1 Silent p.V366V 0.10 TCGA-GU-A42P-01 X 100611774 100611774 C A BTK Missense_Mutation p.M449I 0.11 deleterious(0) benign(0.263) TCGA-GU-A42P-01 X 105855563 105855563 G T CXorf57 Missense_Mutation p.D85Y 0.94 tolerated(0.06) benign(0.123) TCGA-GU-A42P-01 X 105881036 105881036 T C CXorf57 Silent p.F485F 0.56 TCGA-GU-A42P-01 X 125299408 125299408 C T DCAF12L2 Missense_Mutation p.G167D 0.13 deleterious(0) probably_damaging(0.989) TCGA-GU-A42P-01 X 134987437 134987437 G A SAGE1 Missense_Mutation p.E114K 0.85 tolerated(0.05) possibly_damaging(0.718) TCGA-GU-A42P-01 X 44922786 44922787 - G KDM6A Frame_Shift_Ins p.V550Gfs*3 0.41 TCGA-GU-A42P-01 X 47028824 47028824 C A RBM10 Nonsense_Mutation p.S43* 0.92 TCGA-GU-A42P-01 X 47100681 47100681 C A USP11 Silent p.L327L 0.12 TCGA-GU-A42P-01 X 49050783 49050783 C T SYP Missense_Mutation p.R88Q 0.51 tolerated(0.17) benign(0.027) TCGA-GU-A42P-01 X 49597236 49597236 C T PAGE4 Missense_Mutation p.A92V 0.87 tolerated(1) probably_damaging(0.996) TCGA-GU-A42P-01 X 71495426 71495426 C T RPS4X Missense_Mutation p.R77Q 0.38 tolerated(0.16) benign(0.144) TCGA-GU-A42P-01 X 73065188 73065188 G A XIST RNA 0.61 TCGA-GU-A42P-01 X 74513344 74513344 C T UPRT Missense_Mutation p.R142C 0.84 deleterious(0.01) probably_damaging(0.972) TCGA-GU-A42Q-01 10 101715193 101715193 G C DNMBP Missense_Mutation p.H680D 0.30 tolerated_low_confidence(0.45) benign(0.001) TCGA-GU-A42Q-01 10 101823405 101823405 G A CPN1 Silent p.I279I 0.11 TCGA-GU-A42Q-01 10 103530308 103530308 C T FGF8 Silent p.Q171Q 0.29 TCGA-GU-A42Q-01 10 103543112 103543112 C G NPM3 Missense_Mutation p.L12F 0.15 tolerated_low_confidence(0.1) benign(0.003) TCGA-GU-A42Q-01 10 27508685 27508685 C T ACBD5 Missense_Mutation p.E198K 0.08 tolerated(0.06) possibly_damaging(0.894) TCGA-GU-A42Q-01 10 34671617 34671617 G C PARD3 Missense_Mutation p.S417C 0.18 deleterious(0.01) benign(0.246) TCGA-GU-A42Q-01 10 69954213 69954213 G C MYPN Missense_Mutation p.E1007Q 0.10 tolerated(0.25) possibly_damaging(0.799) TCGA-GU-A42Q-01 11 1264097 1264097 C T MUC5B Missense_Mutation p.S1996L 0.38 unknown(0) TCGA-GU-A42Q-01 11 17741293 17741293 G T MYOD1 5'UTR 0.09 TCGA-GU-A42Q-01 11 22242730 22242730 G A ANO5 Missense_Mutation p.V90I 0.43 tolerated(0.2) benign(0.001) TCGA-GU-A42Q-01 11 43429035 43429035 C G TTC17 Missense_Mutation p.L658V 0.41 deleterious(0) probably_damaging(0.993) TCGA-GU-A42Q-01 11 5602241 5602241 C G OR52B6 Missense_Mutation p.I45M 0.44 tolerated(0.19) benign(0.009) TCGA-GU-A42Q-01 11 6704519 6704519 C T MRPL17 Silent p.L3L 0.69 TCGA-GU-A42Q-01 11 67957391 67957391 C T SUV420H1 Silent p.S51S 0.38 TCGA-GU-A42Q-01 11 7437293 7437293 G C SYT9 Missense_Mutation p.E355D 0.24 tolerated(0.15) benign(0.001) TCGA-GU-A42Q-01 12 113266187 113266187 C T RPH3A Nonsense_Mutation p.Q22* 0.23 TCGA-GU-A42Q-01 12 123479416 123479417 - GGG PITPNM2 In_Frame_Ins p.D721_L722insP 0.17 TCGA-GU-A42Q-01 12 1943874 1943874 C G LRTM2 Missense_Mutation p.S367C 0.22 deleterious(0) benign(0.079) TCGA-GU-A42Q-01 12 22826480 22826480 G A ETNK1 Silent p.Q366Q 0.29 TCGA-GU-A42Q-01 12 27234163 27234163 G A C12orf71 Missense_Mutation p.H252Y 0.07 tolerated(1) benign(0.056) TCGA-GU-A42Q-01 12 42866199 42866199 C G PRICKLE1 Silent p.L40L 0.59 TCGA-GU-A42Q-01 12 49227194 49227194 T C DDX23 Missense_Mutation p.M557V 0.18 deleterious(0.03) possibly_damaging(0.458) TCGA-GU-A42Q-01 12 57995323 57995323 C G PIP4K2C Missense_Mutation p.I400M 0.35 deleterious(0) probably_damaging(0.992) TCGA-GU-A42Q-01 12 58007841 58007841 C G ARHGEF25 Missense_Mutation p.L238V 0.49 deleterious(0) possibly_damaging(0.721) TCGA-GU-A42Q-01 12 67699550 67699550 T C CAND1 Missense_Mutation p.I701T 0.19 deleterious(0.02) possibly_damaging(0.698) TCGA-GU-A42Q-01 12 70049034 70049034 C T BEST3 Missense_Mutation p.E554K 0.31 tolerated_low_confidence(0.08) benign(0.002) TCGA-GU-A42Q-01 13 75933907 75933907 G C TBC1D4 Missense_Mutation p.Q390E 0.43 deleterious(0) possibly_damaging(0.824) TCGA-GU-A42Q-01 14 21560084 21560084 C T ZNF219 Missense_Mutation p.E458K 0.22 tolerated(0.53) benign(0.3) TCGA-GU-A42Q-01 14 23863422 23863422 G A MYH6 Missense_Mutation p.T847M 0.12 tolerated(0.11) possibly_damaging(0.556) TCGA-GU-A42Q-01 14 44975863 44975863 C A FSCB Nonsense_Mutation p.E110* 0.38 TCGA-GU-A42Q-01 14 50244636 50244636 C G KLHDC2 Nonsense_Mutation p.S144* 0.16 TCGA-GU-A42Q-01 14 64457759 64457759 G C SYNE2 Missense_Mutation p.E858Q 0.42 possibly_damaging(0.897) TCGA-GU-A42Q-01 14 64457801 64457801 G C SYNE2 Missense_Mutation p.E872Q 0.36 benign(0.27) TCGA-GU-A42Q-01 15 25310189 25310189 C G SNORD116-6 RNA 0.09 TCGA-GU-A42Q-01 15 33954872 33954872 T C RYR3 Missense_Mutation p.V1714A 0.25 benign(0.047) TCGA-GU-A42Q-01 15 42740304 42740305 - CAT ZNF106 In_Frame_Ins p.D1010dup 0.17 TCGA-GU-A42Q-01 15 43500925 43500925 G A EPB42 Missense_Mutation p.S324L 0.46 tolerated(0.24) probably_damaging(0.982) TCGA-GU-A42Q-01 15 43621512 43621512 G C LCMT2 Silent p.L392L 0.25 TCGA-GU-A42Q-01 15 44887641 44887641 G C SPG11 Missense_Mutation p.S1484C 0.29 deleterious(0.02) benign(0.192) TCGA-GU-A42Q-01 15 51507277 51507277 C G CYP19A1 Missense_Mutation p.Q337H 0.25 tolerated(0.42) benign(0.003) TCGA-GU-A42Q-01 15 69328165 69328165 C T NOX5 Silent p.G359G 0.31 TCGA-GU-A42Q-01 15 75042616 75042616 G C CYP1A2 Silent p.L179L 0.11 TCGA-GU-A42Q-01 15 89422195 89422195 C T HAPLN3 Intron 0.27 TCGA-GU-A42Q-01 15 91496789 91496789 C T UNC45A Missense_Mutation p.S893L 0.29 deleterious(0) benign(0.155) TCGA-GU-A42Q-01 15 93563473 93563473 G C CHD2 Missense_Mutation p.R1713T 0.28 tolerated_low_confidence(0.14) probably_damaging(0.977) TCGA-GU-A42Q-01 16 11374788 11374788 G C PRM1 3'UTR 0.34 TCGA-GU-A42Q-01 16 14761496 14761496 G A BFAR Missense_Mutation p.V389M 0.11 tolerated(0.08) possibly_damaging(0.66) TCGA-GU-A42Q-01 16 1867236 1867236 T C HAGH Missense_Mutation p.Y193C 0.43 deleterious(0) probably_damaging(0.938) TCGA-GU-A42Q-01 16 2817462 2817462 C T SRRM2 Silent p.L2311L 0.28 TCGA-GU-A42Q-01 16 4745075 4745075 C G NUDT16L1 Silent p.L177L 0.40 TCGA-GU-A42Q-01 16 51174261 51174261 G A SALL1 Silent p.S624S 0.26 TCGA-GU-A42Q-01 16 56701966 56701966 G A MT1G 5'UTR 0.12 TCGA-GU-A42Q-01 16 71482809 71482809 G A ZNF23 Silent p.F373F 0.17 TCGA-GU-A42Q-01 16 71898823 71898823 C T ZNF821 Missense_Mutation p.E99K 0.17 tolerated(0.83) benign(0) TCGA-GU-A42Q-01 16 90038223 90038223 C T CENPBD1 Silent p.A36A 0.17 TCGA-GU-A42Q-01 17 42744939 42744939 G C C17orf104 Missense_Mutation p.E554Q 0.18 deleterious(0.03) probably_damaging(0.917) TCGA-GU-A42Q-01 17 43195727 43195727 G C PLCD3 Missense_Mutation p.S349C 0.40 deleterious(0.03) probably_damaging(0.99) TCGA-GU-A42Q-01 17 43344950 43344950 G C MAP3K14-AS1 RNA 0.11 TCGA-GU-A42Q-01 17 44144948 44144948 C A KANSL1 Missense_Mutation p.G540V 0.20 deleterious(0.01) possibly_damaging(0.878) TCGA-GU-A42Q-01 17 6683478 6683478 G T FBXO39 Missense_Mutation p.M97I 0.60 tolerated(0.39) benign(0.002) TCGA-GU-A42Q-01 17 73663532 73663532 G C SAP30BP Missense_Mutation p.G27A 0.17 deleterious_low_confidence(0.04) benign(0.012) TCGA-GU-A42Q-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.41 TCGA-GU-A42Q-01 17 80367279 80367279 C G OGFOD3 Missense_Mutation p.E130Q 0.14 tolerated(0.11) benign(0.112) TCGA-GU-A42Q-01 17 8789561 8789561 C A PIK3R5 Missense_Mutation p.A705S 0.25 deleterious(0.01) possibly_damaging(0.843) TCGA-GU-A42Q-01 18 12028068 12028068 G A IMPA2 Missense_Mutation p.E173K 0.30 deleterious(0) probably_damaging(0.999) TCGA-GU-A42Q-01 18 12325598 12325598 C T TUBB6 Silent p.F270F 0.38 TCGA-GU-A42Q-01 18 2673303 2673303 G A SMCHD1 Missense_Mutation p.D150N 0.23 deleterious(0) probably_damaging(1) TCGA-GU-A42Q-01 18 29116271 29116271 A G DSG2 Silent p.A510A 0.19 TCGA-GU-A42Q-01 18 51813712 51813712 G C POLI Missense_Mutation p.E377Q 0.29 tolerated(0.07) benign(0.098) TCGA-GU-A42Q-01 18 52937170 52937170 C A TCF4 Missense_Mutation p.D374Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-GU-A42Q-01 18 61078764 61078764 C G VPS4B Silent p.G25G 0.15 TCGA-GU-A42Q-01 18 74090955 74090955 G C ZNF516 Silent p.V1038V 0.14 TCGA-GU-A42Q-01 18 74091033 74091033 G C ZNF516 Missense_Mutation p.L1013V 0.15 tolerated(0.52) possibly_damaging(0.53) TCGA-GU-A42Q-01 18 74091081 74091081 G C ZNF516 Missense_Mutation p.L997V 0.31 tolerated(0.53) benign(0.184) TCGA-GU-A42Q-01 18 74091111 74091111 G T ZNF516 Missense_Mutation p.P987T 0.14 tolerated(0.51) benign(0.001) TCGA-GU-A42Q-01 18 74091117 74091117 G A ZNF516 Missense_Mutation p.P985S 0.18 tolerated(0.17) benign(0.002) TCGA-GU-A42Q-01 18 74091295 74091295 G A ZNF516 Silent p.F925F 0.13 TCGA-GU-A42Q-01 18 74091357 74091357 G A ZNF516 Silent p.L905L 0.28 TCGA-GU-A42Q-01 19 10610576 10610576 G A KEAP1 Missense_Mutation p.S45F 0.36 deleterious(0) probably_damaging(0.998) TCGA-GU-A42Q-01 19 10687928 10687928 G A AP1M2 Silent p.S331S 0.45 TCGA-GU-A42Q-01 19 11472107 11472107 C T DKFZP761J1410 Silent p.R177R 0.30 TCGA-GU-A42Q-01 19 16687484 16687484 G A MED26 Missense_Mutation p.S386L 0.37 deleterious(0.01) benign(0.424) TCGA-GU-A42Q-01 19 18333084 18333084 G C PDE4C Missense_Mutation p.Q98E 0.43 deleterious_low_confidence(0.02) benign(0.002) TCGA-GU-A42Q-01 19 20808062 20808062 G C ZNF626 Silent p.G207G 0.55 TCGA-GU-A42Q-01 19 21299711 21299711 G C ZNF714 Missense_Mutation p.E81Q 0.29 deleterious(0.04) benign(0.372) TCGA-GU-A42Q-01 19 33439190 33439190 G A CEP89 Nonsense_Mutation p.Q193* 0.32 TCGA-GU-A42Q-01 19 35231800 35231800 G A ZNF181 Missense_Mutation p.E172K 0.52 tolerated(0.83) benign(0.142) TCGA-GU-A42Q-01 19 36349363 36349363 C A KIRREL2 Missense_Mutation p.H89N 0.48 tolerated(0.13) possibly_damaging(0.711) TCGA-GU-A42Q-01 19 3781620 3781620 C G MATK Missense_Mutation p.E244Q 0.25 tolerated(0.15) benign(0.34) TCGA-GU-A42Q-01 19 38230505 38230505 G A ZNF573 Missense_Mutation p.H296Y 0.56 deleterious(0.01) probably_damaging(0.988) TCGA-GU-A42Q-01 19 39328285 39328285 C T AC104534.3 Missense_Mutation p.D139N 0.30 tolerated(0.28) unknown(0) TCGA-GU-A42Q-01 19 4409115 4409115 G A CHAF1A Missense_Mutation p.E107K 0.16 tolerated(1) benign(0.305) TCGA-GU-A42Q-01 19 44980579 44980579 G C ZNF180 3'UTR 0.55 TCGA-GU-A42Q-01 19 47290956 47290956 G A SLC1A5 Silent p.F89F 0.56 TCGA-GU-A42Q-01 19 48807360 48807360 G A CCDC114 Missense_Mutation p.R198C 0.44 deleterious(0) probably_damaging(1) TCGA-GU-A42Q-01 19 49925824 49925824 G A PTH2 Silent p.D68D 0.27 TCGA-GU-A42Q-01 1 109793200 109793200 C G CELSR2 Missense_Mutation p.L167V 0.47 tolerated(0.39) benign(0) TCGA-GU-A42Q-01 1 12476781 12476781 G A VPS13D Silent p.L4078L 0.19 TCGA-GU-A42Q-01 1 12888368 12888368 C A PRAMEF11 Silent p.G52G 0.09 TCGA-GU-A42Q-01 1 151079548 151079548 G C GABPB2 Missense_Mutation p.D258H 0.32 deleterious(0) possibly_damaging(0.895) TCGA-GU-A42Q-01 1 152080026 152080026 C T TCHH Silent p.Q1889Q 0.14 TCGA-GU-A42Q-01 1 152733513 152733513 G T KPRP Silent p.A483A 0.17 TCGA-GU-A42Q-01 1 155912557 155912557 G A RXFP4 Missense_Mutation p.A353T 0.33 tolerated(0.18) benign(0.026) TCGA-GU-A42Q-01 1 182554975 182554975 G A RNASEL Missense_Mutation p.H323Y 0.20 tolerated(1) benign(0.001) TCGA-GU-A42Q-01 1 19952928 19952928 G A MINOS1-NBL1 Intron 0.33 TCGA-GU-A42Q-01 1 201398306 201398306 C G RP11-134G8.2 RNA 0.27 TCGA-GU-A42Q-01 1 202531973 202531973 C T PPP1R12B Missense_Mutation p.R859C 0.39 deleterious(0.05) possibly_damaging(0.856) TCGA-GU-A42Q-01 1 217915359 217915359 G A SPATA17 Silent p.E146E 0.19 TCGA-GU-A42Q-01 1 22183799 22183799 G A HSPG2 Silent p.F1791F 0.31 TCGA-GU-A42Q-01 1 228335209 228335209 C G GUK1 Missense_Mutation p.I139M 0.20 deleterious(0.04) possibly_damaging(0.577) TCGA-GU-A42Q-01 1 229661685 229661685 G A ABCB10 Missense_Mutation p.S635L 0.41 deleterious(0) probably_damaging(1) TCGA-GU-A42Q-01 1 33795721 33795721 C T PHC2 Missense_Mutation p.R699Q 0.18 deleterious(0.05) probably_damaging(0.946) TCGA-GU-A42Q-01 1 39914374 39914374 G C MACF1 Missense_Mutation p.D4674H 0.23 probably_damaging(1) TCGA-GU-A42Q-01 1 43830026 43830026 C T ELOVL1 Nonsense_Mutation p.W196* 0.13 TCGA-GU-A42Q-01 1 44086185 44086185 G C PTPRF Missense_Mutation p.D1767H 0.33 deleterious(0) probably_damaging(1) TCGA-GU-A42Q-01 1 44086232 44086232 C T PTPRF Silent p.F1782F 0.29 TCGA-GU-A42Q-01 1 6150528 6150528 G A KCNAB2 Silent p.P198P 0.24 TCGA-GU-A42Q-01 1 6659498 6659498 A T KLHL21 Missense_Mutation p.S346T 0.30 tolerated(0.36) benign(0.047) TCGA-GU-A42Q-01 1 7858656 7858656 A T PER3 Missense_Mutation p.H238L 0.11 tolerated(0.15) possibly_damaging(0.507) TCGA-GU-A42Q-01 1 7980818 7980818 G C TNFRSF9 3'UTR 0.29 TCGA-GU-A42Q-01 1 94645405 94645405 C A ARHGAP29 Missense_Mutation p.D786Y 0.31 deleterious(0.02) probably_damaging(0.984) TCGA-GU-A42Q-01 20 13756853 13756853 C T ESF1 Missense_Mutation p.C234Y 0.34 tolerated_low_confidence(1) benign(0) TCGA-GU-A42Q-01 20 3214831 3214831 G A SLC4A11 Missense_Mutation p.R184C 0.20 tolerated(0.13) benign(0.003) TCGA-GU-A42Q-01 20 32438816 32438816 G A CHMP4B Missense_Mutation p.E143K 0.27 tolerated(0.25) benign(0.004) TCGA-GU-A42Q-01 20 34583058 34583058 G A CNBD2 Silent p.L318L 0.33 TCGA-GU-A42Q-01 20 61143846 61143846 A G C20orf166 5'Flank 0.27 TCGA-GU-A42Q-01 21 43176870 43176870 C G RIPK4 Missense_Mutation p.E97Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-GU-A42Q-01 21 43829601 43829601 C T UBASH3A Missense_Mutation p.P80S 0.15 deleterious(0) probably_damaging(1) TCGA-GU-A42Q-01 22 19864727 19864727 C T TXNRD2 Silent p.R492R 0.40 TCGA-GU-A42Q-01 22 22064977 22064977 T C YPEL1 Silent p.R19R 0.25 TCGA-GU-A42Q-01 22 32815351 32815351 C G BPIFC Missense_Mutation p.E420Q 0.43 tolerated(0.09) possibly_damaging(0.828) TCGA-GU-A42Q-01 2 133542370 133542370 C G NCKAP5 Missense_Mutation p.D672H 0.35 deleterious(0) probably_damaging(1) TCGA-GU-A42Q-01 2 154996912 154996912 G C GALNT13 Missense_Mutation p.D69H 0.36 deleterious(0.03) benign(0.027) TCGA-GU-A42Q-01 2 166616039 166616039 T C GALNT3 Missense_Mutation p.I294V 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-GU-A42Q-01 2 167759981 167759981 C A XIRP2 5'UTR 0.12 TCGA-GU-A42Q-01 2 169999206 169999206 C T LRP2 Silent p.G4362G 0.17 TCGA-GU-A42Q-01 2 172641748 172641748 C G SLC25A12 3'UTR 0.21 TCGA-GU-A42Q-01 2 172641770 172641770 C G SLC25A12 3'UTR 0.26 TCGA-GU-A42Q-01 2 202141669 202141669 G C CASP8 Missense_Mutation p.R319S 0.10 deleterious(0) probably_damaging(0.999) TCGA-GU-A42Q-01 2 228552263 228552263 T A SLC19A3 Silent p.A447A 0.16 TCGA-GU-A42Q-01 2 234235785 234235785 G C SAG Missense_Mutation p.E152Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-GU-A42Q-01 2 32409378 32409378 G C SLC30A6 Missense_Mutation p.L125F 0.28 tolerated(0.16) benign(0.002) TCGA-GU-A42Q-01 2 42282494 42282494 G A PKDCC Missense_Mutation p.G395R 0.20 deleterious(0) probably_damaging(0.998) TCGA-GU-A42Q-01 2 50463995 50463995 G A NRXN1 Nonsense_Mutation p.Q1200* 0.33 TCGA-GU-A42Q-01 2 70123608 70123608 C T SNRNP27 Nonsense_Mutation p.R66* 0.24 TCGA-GU-A42Q-01 2 77748874 77748874 C A LRRTM4 Intron 0.18 TCGA-GU-A42Q-01 2 80772104 80772104 C T CTNNA2 Intron 0.38 TCGA-GU-A42Q-01 2 8871724 8871724 T G KIDINS220 Missense_Mutation p.E1481A 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-A42Q-01 3 101484366 101484366 C T CEP97 Nonsense_Mutation p.Q857* 0.34 TCGA-GU-A42Q-01 3 121414880 121414880 C T GOLGB1 Missense_Mutation p.R1497Q 0.12 probably_damaging(1) TCGA-GU-A42Q-01 3 121591444 121591444 C G EAF2 Missense_Mutation p.S182C 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-GU-A42Q-01 3 127335797 127335797 G T MCM2 Nonsense_Mutation p.E537* 0.34 TCGA-GU-A42Q-01 3 129247849 129247849 C T RHO Silent p.F91F 0.32 TCGA-GU-A42Q-01 3 134369698 134369698 C G KY Silent p.A35A 0.41 TCGA-GU-A42Q-01 3 147108799 147108799 G C ZIC4 Missense_Mutation p.S358W 0.18 deleterious(0) probably_damaging(0.99) TCGA-GU-A42Q-01 3 151162973 151162973 C T IGSF10 Missense_Mutation p.G1599D 0.27 tolerated(0.35) benign(0.003) TCGA-GU-A42Q-01 3 175293868 175293868 G C NAALADL2 Missense_Mutation p.E565Q 0.21 tolerated(0.36) benign(0.328) TCGA-GU-A42Q-01 3 184026668 184026668 A G PSMD2 Missense_Mutation p.Y906C 0.25 deleterious(0) possibly_damaging(0.759) TCGA-GU-A42Q-01 3 184870586 184870586 G A C3orf70 Missense_Mutation p.S9L 0.22 deleterious_low_confidence(0.02) benign(0.011) TCGA-GU-A42Q-01 3 195791225 195791225 G C TFRC Missense_Mutation p.L425V 0.30 tolerated(0.32) possibly_damaging(0.757) TCGA-GU-A42Q-01 3 196198834 196198834 C G RNF168 Missense_Mutation p.K524N 0.48 deleterious(0.04) benign(0.007) TCGA-GU-A42Q-01 3 32587344 32587344 C G DYNC1LI1 Missense_Mutation p.D112H 0.08 deleterious(0) probably_damaging(0.998) TCGA-GU-A42Q-01 3 42917105 42917105 G A CYP8B1 Silent p.F68F 0.20 TCGA-GU-A42Q-01 3 49724213 49724213 C T MST1 Missense_Mutation p.D251N 0.31 deleterious(0.03) benign(0.09) TCGA-GU-A42Q-01 3 49724228 49724228 C G MST1 Missense_Mutation p.D246H 0.33 deleterious(0.01) probably_damaging(0.967) TCGA-GU-A42Q-01 3 52248087 52248087 C T ALAS1 Missense_Mutation p.S605F 0.18 deleterious(0.02) probably_damaging(0.95) TCGA-GU-A42Q-01 4 110635409 110635409 T A PLA2G12A 3'UTR 0.21 TCGA-GU-A42Q-01 4 115997247 115997247 C A NDST4 Nonsense_Mutation p.E316* 0.18 TCGA-GU-A42Q-01 4 153332577 153332577 G A FBXW7 Nonsense_Mutation p.Q127* 0.47 TCGA-GU-A42Q-01 4 156625114 156625114 A G GUCY1A3 Missense_Mutation p.T96A 0.43 tolerated(0.07) possibly_damaging(0.728) TCGA-GU-A42Q-01 4 169013778 169013778 C T ANXA10 5'UTR 0.46 TCGA-GU-A42Q-01 4 39448278 39448278 G T KLB Silent p.P644P 0.43 TCGA-GU-A42Q-01 4 515727 515727 G A PIGG Silent p.R537R 0.21 TCGA-GU-A42Q-01 4 87696775 87696775 C A PTPN13 Nonsense_Mutation p.S1959* 0.32 TCGA-GU-A42Q-01 5 137902694 137902694 C G HSPA9 Missense_Mutation p.R292T 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-GU-A42Q-01 5 139751849 139751849 G A SLC4A9 Missense_Mutation p.R922Q 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-GU-A42Q-01 5 140801003 140801003 G A PCDHGA11 Missense_Mutation p.R70K 0.26 tolerated_low_confidence(0.09) benign(0.271) TCGA-GU-A42Q-01 5 147889125 147889125 G A HTR4 Missense_Mutation p.L324F 0.27 tolerated(0.26) probably_damaging(0.954) TCGA-GU-A42Q-01 5 148745677 148745677 G A PCYOX1L Missense_Mutation p.A215T 0.44 tolerated(0.1) benign(0.068) TCGA-GU-A42Q-01 5 149215838 149215838 C T PPARGC1B Missense_Mutation p.P607L 0.25 deleterious(0) possibly_damaging(0.907) TCGA-GU-A42Q-01 5 154284173 154284173 C A GEMIN5 Missense_Mutation p.K842N 0.20 deleterious(0) possibly_damaging(0.786) TCGA-GU-A42Q-01 5 176827232 176827232 C T PFN3 Missense_Mutation p.V116I 0.17 tolerated(0.08) benign(0.364) TCGA-GU-A42Q-01 5 33997453 33997453 T C AMACR Intron 0.16 TCGA-GU-A42Q-01 5 79734607 79734607 C G ZFYVE16 Missense_Mutation p.F701L 0.17 tolerated(0.47) possibly_damaging(0.577) TCGA-GU-A42Q-01 5 94872765 94872765 G C TTC37 Missense_Mutation p.F208L 0.40 deleterious(0.05) benign(0.005) TCGA-GU-A42Q-01 5 96215596 96215596 C T ERAP2 Silent p.L69L 0.12 TCGA-GU-A42Q-01 6 109311973 109311973 C G SESN1 Missense_Mutation p.L433F 0.36 tolerated(0.07) possibly_damaging(0.687) TCGA-GU-A42Q-01 6 118635189 118635189 A G SLC35F1 Splice_Site p.X335_splice 0.12 TCGA-GU-A42Q-01 6 14131771 14131771 G C CD83 Missense_Mutation p.E58D 0.25 deleterious(0.05) possibly_damaging(0.814) TCGA-GU-A42Q-01 6 155451167 155451167 C T TIAM2 Silent p.P270P 0.38 TCGA-GU-A42Q-01 6 159457377 159457377 C T TAGAP Missense_Mutation p.E560K 0.16 tolerated(0.36) benign(0.017) TCGA-GU-A42Q-01 6 169064771 169064771 G T SMOC2 Nonsense_Mutation p.E446* 0.36 TCGA-GU-A42Q-01 6 24570162 24570162 C T KIAA0319 Missense_Mutation p.G654S 0.13 deleterious(0.01) probably_damaging(0.974) TCGA-GU-A42Q-01 6 31590590 31590590 T C PRRC2A Silent p.T8T 0.11 TCGA-GU-A42Q-01 6 31854617 31854617 C A EHMT2 Missense_Mutation p.V726L 0.42 tolerated(0.15) possibly_damaging(0.868) TCGA-GU-A42Q-01 6 32906744 32906744 T C HLA-DMB Splice_Site p.X19_splice 0.16 TCGA-GU-A42Q-01 6 64422337 64422337 C G PHF3 Missense_Mutation p.S1618C 0.24 deleterious(0.03) possibly_damaging(0.778) TCGA-GU-A42Q-01 6 91269806 91269806 C G MAP3K7 Silent p.L157L 0.24 TCGA-GU-A42Q-01 6 99885183 99885183 C G USP45 Silent p.V751V 0.40 TCGA-GU-A42Q-01 7 100028723 100028723 G A MEPCE Missense_Mutation p.R361Q 0.19 tolerated(0.25) benign(0.361) TCGA-GU-A42Q-01 7 106843937 106843937 G C COG5 3'UTR 0.24 TCGA-GU-A42Q-01 7 106843949 106843949 G C COG5 3'UTR 0.27 TCGA-GU-A42Q-01 7 106843966 106843966 G A COG5 Nonsense_Mutation p.Q860* 0.30 TCGA-GU-A42Q-01 7 107580556 107580556 G A LAMB1 Silent p.I1213I 0.13 TCGA-GU-A42Q-01 7 116339422 116339422 G T MET Missense_Mutation p.C95F 0.23 deleterious(0) probably_damaging(0.991) TCGA-GU-A42Q-01 7 135315105 135315105 T G NUP205 Missense_Mutation p.L1649R 0.28 deleterious(0) probably_damaging(0.914) TCGA-GU-A42Q-01 7 138269679 138269679 C T TRIM24 Missense_Mutation p.R1046C 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-GU-A42Q-01 7 139092031 139092031 G A LUC7L2 Missense_Mutation p.D274N 0.20 deleterious(0) probably_damaging(0.996) TCGA-GU-A42Q-01 7 26236190 26236190 C G HNRNPA2B1 Missense_Mutation p.R200S 0.23 deleterious(0.05) unknown(0) TCGA-GU-A42Q-01 7 26237349 26237349 C G HNRNPA2B1 Missense_Mutation p.E16Q 0.27 deleterious(0) benign(0.373) TCGA-GU-A42Q-01 7 33044804 33044804 C T FKBP9 Silent p.H518H 0.28 TCGA-GU-A42Q-01 7 42004227 42004227 G A GLI3 Missense_Mutation p.P1482S 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-GU-A42Q-01 7 44579768 44579768 C G NPC1L1 Missense_Mutation p.K76N 0.35 tolerated(0.12) benign(0.02) TCGA-GU-A42Q-01 7 62752310 62752310 A G ZNF733P RNA 0.33 TCGA-GU-A42Q-01 7 70880886 70880886 G A WBSCR17 Missense_Mutation p.V201I 0.23 tolerated(0.19) benign(0.016) TCGA-GU-A42Q-01 7 75959465 75959465 G C YWHAG Missense_Mutation p.S58C 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-GU-A42Q-01 7 94218031 94218031 G A SGCE Nonsense_Mutation p.Q448* 0.15 TCGA-GU-A42Q-01 8 102570814 102570814 C T GRHL2 Missense_Mutation p.P151L 0.30 tolerated(0.12) benign(0.018) TCGA-GU-A42Q-01 8 118183350 118183350 C T SLC30A8 Silent p.L303L 0.18 TCGA-GU-A42Q-01 8 122627250 122627250 G A HAS2 Missense_Mutation p.S253L 0.29 deleterious(0) probably_damaging(0.986) TCGA-GU-A42Q-01 8 125499824 125499824 G C RNF139 Missense_Mutation p.R645T 0.29 tolerated_low_confidence(0.42) benign(0.016) TCGA-GU-A42Q-01 8 144240221 144240221 G A LY6H Silent p.S83S 0.29 TCGA-GU-A42Q-01 8 144662251 144662256 CTGAAT - EEF1D In_Frame_Del p.I611_Q612del 0.10 TCGA-GU-A42Q-01 8 28209134 28209135 - A ZNF395 Frame_Shift_Ins p.L371Sfs*114 0.11 TCGA-GU-A42Q-01 8 35583708 35583708 C T UNC5D Silent p.L448L 0.15 TCGA-GU-A42Q-01 8 49985442 49985442 G T C8orf22 Missense_Mutation p.R18L 0.19 deleterious(0) possibly_damaging(0.773) TCGA-GU-A42Q-01 8 51569553 51569553 G A SNTG1 Missense_Mutation p.G312S 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-GU-A42Q-01 8 61778138 61778138 G A CHD7 Silent p.P2880P 0.12 TCGA-GU-A42Q-01 8 91064185 91064185 C G DECR1 3'UTR 0.42 TCGA-GU-A42Q-01 8 94798529 94798529 G A TMEM67 Missense_Mutation p.G456E 0.13 tolerated(0.25) benign(0.01) TCGA-GU-A42Q-01 9 131028582 131028582 G A GOLGA2 Missense_Mutation p.T195M 0.35 tolerated(0.25) benign(0.024) TCGA-GU-A42Q-01 9 134525605 134525605 C T RAPGEF1 Missense_Mutation p.E77K 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.637) TCGA-GU-A42Q-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.54 TCGA-GU-A42Q-01 9 422131 422131 G T DOCK8 Missense_Mutation p.D1413Y 0.47 deleterious(0) probably_damaging(0.968) TCGA-GU-A42Q-01 9 449888 449888 G C DOCK8 Missense_Mutation p.Q1974H 0.35 deleterious(0) probably_damaging(0.973) TCGA-GU-A42Q-01 9 4585615 4585615 C G SLC1A1 3'UTR 0.43 TCGA-GU-A42Q-01 9 79634744 79634744 G A FOXB2 Silent p.Q58Q 0.26 TCGA-GU-A42Q-01 9 80881568 80881568 G C CEP78 Missense_Mutation p.E687Q 0.29 deleterious_low_confidence(0.01) benign(0.146) TCGA-GU-A42Q-01 X 109697829 109697829 C T RGAG1 Silent p.A1328A 0.67 TCGA-GU-A42Q-01 X 152612686 152612686 C T ZNF275 Silent p.F181F 0.35 TCGA-GU-A42Q-01 X 153673979 153673979 A T FAM50A Splice_Site p.X38_splice 0.47 TCGA-GU-A42Q-01 X 3240254 3240254 G A MXRA5 Missense_Mutation p.R1158C 0.08 deleterious(0) possibly_damaging(0.886) TCGA-GU-A42Q-01 X 3241554 3241554 G C MXRA5 Silent p.L724L 0.40 TCGA-GU-A42Q-01 X 50130617 50130617 C G DGKK RNA 0.24 TCGA-GU-A42Q-01 X 70783176 70783176 C - OGT Intron 0.31 TCGA-GU-A42R-01 10 105169473 105169474 - A PDCD11 Frame_Shift_Ins p.T297Nfs*13 0.30 TCGA-GU-A42R-01 10 119013596 119013596 T C SLC18A2 Silent p.I187I 0.33 TCGA-GU-A42R-01 10 70765492 70765492 G C KIAA1279 Missense_Mutation p.E204Q 0.35 deleterious(0.03) probably_damaging(0.992) TCGA-GU-A42R-01 10 75239146 75239146 C T PPP3CB Missense_Mutation p.R72K 0.32 tolerated(0.6) benign(0) TCGA-GU-A42R-01 10 76993951 76993951 C T COMTD1 Silent p.P223P 0.33 TCGA-GU-A42R-01 11 10022460 10022460 C T SBF2 Splice_Site p.X287_splice 0.65 TCGA-GU-A42R-01 11 3704662 3704662 C T NUP98 Silent p.E1562E 0.67 TCGA-GU-A42R-01 11 55136137 55136137 G A OR4A15 Missense_Mutation p.G260R 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.884) TCGA-GU-A42R-01 11 56468004 56468004 G T OR9G1 Missense_Mutation p.L47F 0.16 deleterious(0) probably_damaging(0.994) TCGA-GU-A42R-01 11 62763286 62763286 G C SLC22A8 Silent p.L297L 0.38 TCGA-GU-A42R-01 11 64571830 64571830 G C MEN1 Silent p.L608L 0.39 TCGA-GU-A42R-01 11 67353963 67353963 G C GSTP1 Missense_Mutation p.R183P 0.35 deleterious(0.01) probably_damaging(0.974) TCGA-GU-A42R-01 12 100797869 100797869 T C SLC17A8 Silent p.I369I 0.31 TCGA-GU-A42R-01 12 116403955 116403955 C G MED13L Missense_Mutation p.E2107Q 0.36 deleterious(0.04) possibly_damaging(0.874) TCGA-GU-A42R-01 12 13062090 13062090 G C GPRC5A Missense_Mutation p.E303Q 0.36 tolerated(0.07) possibly_damaging(0.884) TCGA-GU-A42R-01 12 21608984 21608984 G A PYROXD1 Silent p.L235L 0.38 TCGA-GU-A42R-01 12 2602373 2602373 G T CACNA1C Missense_Mutation p.D312Y 0.38 deleterious(0) possibly_damaging(0.52) TCGA-GU-A42R-01 12 3000150 3000150 G C TULP3 Missense_Mutation p.D13H 0.33 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-GU-A42R-01 12 335578 335578 G A SLC6A13 Silent p.P346P 0.38 TCGA-GU-A42R-01 12 46757598 46757598 C A SLC38A2 Missense_Mutation p.R322I 0.31 deleterious(0) benign(0.436) TCGA-GU-A42R-01 12 48547243 48547243 G A ASB8 Nonsense_Mutation p.Q13* 0.40 TCGA-GU-A42R-01 12 48736909 48736909 C T ZNF641 Silent p.V388V 0.08 TCGA-GU-A42R-01 12 53045870 53045870 G A KRT2 Silent p.F19F 0.36 TCGA-GU-A42R-01 12 56487277 56487277 C T ERBB3 Missense_Mutation p.R475W 0.60 deleterious(0.01) possibly_damaging(0.824) TCGA-GU-A42R-01 12 57472424 57472424 G A TMEM194A Silent p.S35S 0.24 TCGA-GU-A42R-01 12 57472425 57472425 G A TMEM194A Missense_Mutation p.S35F 0.24 tolerated_low_confidence(0.26) benign(0.002) TCGA-GU-A42R-01 12 65445160 65445169 CGCCGCTCCT - WIF1 Frame_Shift_Del p.E367Gfs*28 0.26 TCGA-GU-A42R-01 12 65564407 65564407 G T LEMD3 Missense_Mutation p.G344V 0.23 deleterious_low_confidence(0.04) probably_damaging(0.989) TCGA-GU-A42R-01 12 73012710 73012710 C T TRHDE Silent p.I742I 0.33 TCGA-GU-A42R-01 12 75905329 75905329 C T KRR1 Missense_Mutation p.E17K 0.31 tolerated(0.96) benign(0) TCGA-GU-A42R-01 13 112721950 112721950 C T SOX1 5'UTR 0.40 TCGA-GU-A42R-01 13 114498181 114498181 G A TMEM255B Missense_Mutation p.V105M 0.47 deleterious(0) probably_damaging(0.987) TCGA-GU-A42R-01 13 32912514 32912514 C G BRCA2 Nonsense_Mutation p.S1341* 0.35 TCGA-GU-A42R-01 13 49933858 49933858 G A CAB39L Silent p.L129L 0.28 TCGA-GU-A42R-01 13 70681661 70681661 G C KLHL1 Silent p.L57L 0.34 TCGA-GU-A42R-01 13 72146982 72146982 G C DACH1 Nonsense_Mutation p.S432* 0.33 TCGA-GU-A42R-01 13 88329086 88329086 G A SLITRK5 Silent p.Q481Q 0.40 TCGA-GU-A42R-01 13 92797155 92797155 G A GPC5 Missense_Mutation p.E492K 0.34 deleterious(0.02) possibly_damaging(0.559) TCGA-GU-A42R-01 14 107199009 107199009 C T IGHV3-72 Missense_Mutation p.D94N 0.30 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-GU-A42R-01 14 22356096 22356096 A G TRAV12-2 5'UTR 0.26 TCGA-GU-A42R-01 14 24436512 24436512 G A DHRS4 Intron 0.18 TCGA-GU-A42R-01 14 28734275 28734275 C G BNIP3P1 RNA 0.44 TCGA-GU-A42R-01 14 39717074 39717074 T C MIA2 Silent p.I432I 0.40 TCGA-GU-A42R-01 14 58831658 58831658 C G ARID4A Missense_Mutation p.L951V 0.31 tolerated(0.34) benign(0.342) TCGA-GU-A42R-01 14 62244847 62244847 C G SNAPC1 Missense_Mutation p.Q251E 0.26 tolerated(0.47) benign(0.002) TCGA-GU-A42R-01 14 64427480 64427480 A G SYNE2 Intron 0.33 TCGA-GU-A42R-01 14 68123177 68123177 C T VTI1B Missense_Mutation p.E166K 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-GU-A42R-01 14 92074642 92074642 G A CATSPERB Missense_Mutation p.S902L 0.35 deleterious(0) probably_damaging(0.998) TCGA-GU-A42R-01 14 92074649 92074649 G A CATSPERB Missense_Mutation p.H900Y 0.34 tolerated(1) benign(0.001) TCGA-GU-A42R-01 14 94155051 94155051 C A UNC79 Missense_Mutation p.T2179N 0.34 deleterious(0) probably_damaging(0.998) TCGA-GU-A42R-01 14 94711948 94711948 C T PPP4R4 Missense_Mutation p.L457F 0.41 deleterious(0.05) possibly_damaging(0.527) TCGA-GU-A42R-01 15 28231760 28231760 C T OCA2 Silent p.T404T 0.33 TCGA-GU-A42R-01 15 31197051 31197051 A G FAN1 Missense_Mutation p.E62G 0.21 deleterious(0.02) benign(0.33) TCGA-GU-A42R-01 15 33795931 33795931 G A RYR3 Missense_Mutation p.G91S 0.25 benign(0.001) TCGA-GU-A42R-01 15 40488917 40488917 C G BUB1B Missense_Mutation p.F410L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-GU-A42R-01 15 50519375 50519375 G A SLC27A2 Missense_Mutation p.R486Q 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-GU-A42R-01 15 75122674 75122674 T C CPLX3 Silent p.A152A 0.31 TCGA-GU-A42R-01 15 89760379 89760379 G A RLBP1 Silent p.N106N 0.31 TCGA-GU-A42R-01 16 30995215 30995215 G A SETD1A Silent p.K1665K 0.42 TCGA-GU-A42R-01 16 48138177 48138177 G A ABCC12 Missense_Mutation p.H926Y 0.34 tolerated(1) benign(0.065) TCGA-GU-A42R-01 16 69377239 69377239 C A TMED6 3'UTR 0.53 TCGA-GU-A42R-01 16 87921738 87921738 G A CA5A Silent p.S305S 0.39 TCGA-GU-A42R-01 17 10231294 10231294 A G MYH13 Silent p.F860F 0.66 TCGA-GU-A42R-01 17 20224675 20224675 C T AC004702.2 Intron 0.70 TCGA-GU-A42R-01 17 30358451 30358451 G C LRRC37B Missense_Mutation p.W650C 0.10 deleterious(0) probably_damaging(0.971) TCGA-GU-A42R-01 17 33289624 33289624 G C ZNF830 Missense_Mutation p.E347Q 0.61 tolerated(0.07) probably_damaging(0.993) TCGA-GU-A42R-01 17 3432259 3432259 G A TRPV3 Silent p.L425L 0.41 TCGA-GU-A42R-01 17 37687065 37687065 G C CDK12 Missense_Mutation p.L1323F 0.50 possibly_damaging(0.643) TCGA-GU-A42R-01 17 38209839 38209839 T C MED24 Missense_Mutation p.N5D 0.26 tolerated(0.06) benign(0.039) TCGA-GU-A42R-01 17 39674601 39674601 A G KRT15 Missense_Mutation p.I160T 0.52 deleterious(0.01) benign(0.1) TCGA-GU-A42R-01 17 40379652 40379652 G C STAT5B Silent p.L60L 0.55 TCGA-GU-A42R-01 17 46114579 46114579 C T COPZ2 Intron 0.55 TCGA-GU-A42R-01 17 62029000 62029000 C A SCN4A Missense_Mutation p.K879N 0.21 tolerated(0.24) benign(0.438) TCGA-GU-A42R-01 17 62029011 62029011 C T SCN4A Missense_Mutation p.E876K 0.24 tolerated(0.46) benign(0.006) TCGA-GU-A42R-01 17 76866987 76866987 G A TIMP2 Silent p.L111L 0.46 TCGA-GU-A42R-01 17 79891201 79891201 C T PYCR1 Silent p.K283K 0.27 TCGA-GU-A42R-01 17 9545099 9545099 C T WDR16 Missense_Mutation p.S545F 0.63 deleterious(0.02) benign(0.111) TCGA-GU-A42R-01 18 32621381 32621381 A C MAPRE2 5'UTR 0.62 TCGA-GU-A42R-01 18 39584344 39584344 G A PIK3C3 Missense_Mutation p.V337I 0.75 tolerated(0.07) possibly_damaging(0.776) TCGA-GU-A42R-01 19 11559788 11559788 C T PRKCSH Missense_Mutation p.S442F 0.35 deleterious(0) probably_damaging(0.995) TCGA-GU-A42R-01 19 16045054 16045054 C T CYP4F11 Silent p.P55P 0.32 TCGA-GU-A42R-01 19 16982110 16982110 C T SIN3B Silent p.I863I 0.41 TCGA-GU-A42R-01 19 19308943 19308943 G C RFXANK Missense_Mutation p.E156Q 0.31 tolerated(0.07) probably_damaging(0.942) TCGA-GU-A42R-01 19 19312578 19312578 G A RFXANK 3'UTR 0.36 TCGA-GU-A42R-01 19 19313302 19313302 G C NR2C2AP Missense_Mutation p.S71C 0.24 deleterious(0.03) probably_damaging(0.948) TCGA-GU-A42R-01 19 19313921 19313921 G C NR2C2AP 5'UTR 0.32 TCGA-GU-A42R-01 19 19822176 19822176 C T ZNF14 Missense_Mutation p.M638I 0.30 tolerated(0.08) benign(0) TCGA-GU-A42R-01 19 34884827 34884827 C G GPI Missense_Mutation p.H317Q 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-GU-A42R-01 19 34949727 34949727 A G UBA2 Silent p.A433A 0.61 TCGA-GU-A42R-01 19 40521413 40521413 G A ZNF546 Missense_Mutation p.E746K 0.64 deleterious(0.04) possibly_damaging(0.57) TCGA-GU-A42R-01 19 44833549 44833549 C T ZNF112 Missense_Mutation p.C260Y 0.15 tolerated(0.49) benign(0.002) TCGA-GU-A42R-01 19 46998590 46998590 G A PNMAL2 Missense_Mutation p.P45S 0.19 deleterious(0.04) benign(0.235) TCGA-GU-A42R-01 19 46998594 46998594 G A PNMAL2 Silent p.L43L 0.19 TCGA-GU-A42R-01 19 49249126 49249126 C G IZUMO1 5'UTR 0.62 TCGA-GU-A42R-01 19 53644201 53644201 T A ZNF347 Missense_Mutation p.Y628F 0.63 deleterious(0) benign(0.225) TCGA-GU-A42R-01 19 58131830 58131830 A G ZNF134 Missense_Mutation p.I115V 0.60 tolerated(0.14) benign(0.001) TCGA-GU-A42R-01 1 100701034 100701034 G C DBT Nonsense_Mutation p.S70* 0.32 TCGA-GU-A42R-01 1 102462345 102462345 G C OLFM3 Missense_Mutation p.L10V 0.34 tolerated(0.88) unknown(0) TCGA-GU-A42R-01 1 11596632 11596632 C T PTCHD2 Silent p.F1356F 0.53 TCGA-GU-A42R-01 1 116932977 116932977 C - ATP1A1 Frame_Shift_Del p.H390Tfs*68 0.30 TCGA-GU-A42R-01 1 11810185 11810185 C T AGTRAP Missense_Mutation p.A139V 0.27 tolerated(0.13) benign(0.021) TCGA-GU-A42R-01 1 155154488 155154488 C T TRIM46 Silent p.G583G 0.35 TCGA-GU-A42R-01 1 155230165 155230165 C T SCAMP3 Missense_Mutation p.R115Q 0.38 deleterious(0) possibly_damaging(0.517) TCGA-GU-A42R-01 1 155288103 155288103 G A FDPS Intron 0.37 TCGA-GU-A42R-01 1 155922418 155922418 C A ARHGEF2 Splice_Site p.X662_splice 0.37 TCGA-GU-A42R-01 1 161042337 161042337 G C PVRL4 3'UTR 0.36 TCGA-GU-A42R-01 1 176833476 176833476 C T ASTN1 Missense_Mutation p.E1277K 0.42 deleterious_low_confidence(0.02) benign(0.385) TCGA-GU-A42R-01 1 196965186 196965186 C A CFHR5 Silent p.L275L 0.35 TCGA-GU-A42R-01 1 202936373 202936373 G C CYB5R1 5'UTR 0.30 TCGA-GU-A42R-01 1 22902808 22902808 G A EPHA8 Silent p.T86T 0.36 TCGA-GU-A42R-01 1 22902965 22902965 G C EPHA8 Missense_Mutation p.E139Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-GU-A42R-01 1 235973532 235973532 G T LYST Missense_Mutation p.P196T 0.34 tolerated_low_confidence(0.14) benign(0.108) TCGA-GU-A42R-01 1 27100988 27100988 C T ARID1A Nonsense_Mutation p.Q1424* 0.36 TCGA-GU-A42R-01 1 27101586 27101586 C T ARID1A Missense_Mutation p.S1623L 0.41 benign(0.045) TCGA-GU-A42R-01 1 28086093 28086093 G A FAM76A Missense_Mutation p.M298I 0.31 tolerated(0.1) benign(0.087) TCGA-GU-A42R-01 1 46745288 46745288 T C LRRC41 Splice_Site p.X674_splice 0.32 TCGA-GU-A42R-01 1 46751604 46751604 C A LRRC41 Nonsense_Mutation p.E309* 0.12 TCGA-GU-A42R-01 1 49201962 49201962 C T BEND5 Missense_Mutation p.D353N 0.30 tolerated(0.31) possibly_damaging(0.607) TCGA-GU-A42R-01 1 85498432 85498432 G C MCOLN3 Missense_Mutation p.L227V 0.57 deleterious(0.01) possibly_damaging(0.742) TCGA-GU-A42R-01 20 23017195 23017195 T G SSTR4 Missense_Mutation p.C359G 0.61 tolerated(0.26) benign(0.058) TCGA-GU-A42R-01 20 30676371 30676371 G T HCK Missense_Mutation p.G339V 0.22 deleterious(0) probably_damaging(0.985) TCGA-GU-A42R-01 20 34312571 34312571 T C RBM39 Missense_Mutation p.D203G 0.28 deleterious(0) possibly_damaging(0.568) TCGA-GU-A42R-01 20 35060846 35060846 C A DLGAP4 Missense_Mutation p.F242L 0.24 tolerated(0.13) benign(0.234) TCGA-GU-A42R-01 20 44669042 44669042 A G SLC12A5 Missense_Mutation p.K238E 0.25 tolerated(0.65) benign(0.005) TCGA-GU-A42R-01 20 45216772 45216772 G C SLC13A3 Missense_Mutation p.F349L 0.19 deleterious(0) benign(0.093) TCGA-GU-A42R-01 20 46282167 46282167 C G NCOA3 3'UTR 0.24 TCGA-GU-A42R-01 20 47990422 47990422 C G KCNB1 Missense_Mutation p.E559Q 0.31 tolerated_low_confidence(0.15) benign(0.422) TCGA-GU-A42R-01 20 9561367 9561367 C A PAK7 Missense_Mutation p.A139S 0.05 tolerated(0.78) benign(0.014) TCGA-GU-A42R-01 21 30307608 30307608 T C LTN1 Silent p.S1612S 0.29 TCGA-GU-A42R-01 21 33368255 33368255 G T HUNK Missense_Mutation p.D494Y 0.29 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-GU-A42R-01 21 43838679 43838679 C T UBASH3A Missense_Mutation p.T336M 0.37 deleterious(0.05) possibly_damaging(0.484) TCGA-GU-A42R-01 21 47648499 47648499 C A LSS Missense_Mutation p.R10L 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-GU-A42R-01 22 19504100 19504100 G A CDC45 Silent p.L529L 0.40 TCGA-GU-A42R-01 22 19951738 19951738 G A COMT Silent p.K177K 0.36 TCGA-GU-A42R-01 22 20386635 20386635 G A PI4KAP1 RNA 0.32 TCGA-GU-A42R-01 22 30659991 30659991 C T OSM Missense_Mutation p.E214K 0.38 tolerated(0.29) benign(0.003) TCGA-GU-A42R-01 22 46319096 46319096 C T WNT7B Silent p.E230E 0.42 TCGA-GU-A42R-01 2 160006935 160006935 G A TANC1 Missense_Mutation p.A184T 0.34 tolerated(0.26) benign(0.037) TCGA-GU-A42R-01 2 172016855 172016855 C T TLK1 Silent p.A28A 0.07 TCGA-GU-A42R-01 2 189876410 189876410 G C COL3A1 Silent p.V1437V 0.30 TCGA-GU-A42R-01 2 20192811 20192811 G C MATN3 3'UTR 0.51 TCGA-GU-A42R-01 2 207171761 207171761 C G ZDBF2 Missense_Mutation p.L837V 0.38 tolerated(0.15) possibly_damaging(0.745) TCGA-GU-A42R-01 2 21233836 21233836 G A APOB Silent p.V1968V 0.35 TCGA-GU-A42R-01 2 220073250 220073250 G C ZFAND2B Intron 0.34 TCGA-GU-A42R-01 2 225796298 225796298 C G DOCK10 Missense_Mutation p.D71H 0.27 deleterious(0) possibly_damaging(0.882) TCGA-GU-A42R-01 2 238305397 238305397 T C COL6A3 Missense_Mutation p.T22A 0.37 benign(0.048) TCGA-GU-A42R-01 2 241421610 241421610 C A ANKMY1 Nonsense_Mutation p.E870* 0.32 TCGA-GU-A42R-01 2 242082263 242082263 G A PASK Missense_Mutation p.T62I 0.07 tolerated(0.46) benign(0.01) TCGA-GU-A42R-01 2 26717812 26717812 C T OTOF Missense_Mutation p.E299K 0.25 deleterious(0) probably_damaging(0.999) TCGA-GU-A42R-01 2 27276416 27276416 G A AGBL5 Missense_Mutation p.R121H 0.25 deleterious(0) probably_damaging(0.999) TCGA-GU-A42R-01 2 37873446 37873446 G A CDC42EP3 Silent p.F95F 0.32 TCGA-GU-A42R-01 2 42990228 42990228 G A OXER1 Silent p.H364H 0.44 TCGA-GU-A42R-01 2 48808503 48808503 C A STON1-GTF2A1L Nonsense_Mutation p.S244* 0.38 TCGA-GU-A42R-01 2 64114602 64114602 G T UGP2 Nonsense_Mutation p.E380* 0.31 TCGA-GU-A42R-01 2 65571896 65571896 C T SPRED2 Missense_Mutation p.R54Q 0.41 tolerated(0.64) possibly_damaging(0.516) TCGA-GU-A42R-01 2 73461422 73461422 C G CCT7 5'UTR 0.24 TCGA-GU-A42R-01 2 96587363 96587363 G C ANKRD36C Missense_Mutation p.S746C 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.709) TCGA-GU-A42R-01 3 100463742 100463742 C T TFG Nonsense_Mutation p.Q263* 0.29 TCGA-GU-A42R-01 3 128060617 128060617 G T EEFSEC Missense_Mutation p.R443L 0.39 deleterious(0) probably_damaging(1) TCGA-GU-A42R-01 3 158991572 158991572 C G IQCJ-SCHIP1 Intron 0.37 TCGA-GU-A42R-01 3 17131429 17131429 G A PLCL2 3'UTR 0.28 TCGA-GU-A42R-01 3 44943289 44943289 G C TGM4 Silent p.L279L 0.29 TCGA-GU-A42R-01 3 47147508 47147508 G A SETD2 Silent p.F1606F 0.29 TCGA-GU-A42R-01 3 78676636 78676636 C T ROBO1 Missense_Mutation p.R1237Q 0.39 deleterious(0.03) probably_damaging(0.945) TCGA-GU-A42R-01 4 113545020 113545020 C G C4orf21 Missense_Mutation p.D39H 0.78 deleterious(0) probably_damaging(0.951) TCGA-GU-A42R-01 4 170038745 170038745 G C SH3RF1 Missense_Mutation p.P569R 0.45 deleterious(0) benign(0.424) TCGA-GU-A42R-01 4 170038769 170038769 G A SH3RF1 Missense_Mutation p.S561L 0.45 tolerated(0.05) benign(0.242) TCGA-GU-A42R-01 4 170038903 170038903 G A SH3RF1 Silent p.V516V 0.39 TCGA-GU-A42R-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.79 deleterious(0.01) possibly_damaging(0.594) TCGA-GU-A42R-01 4 1805533 1805533 C T FGFR3 Intron 0.75 TCGA-GU-A42R-01 4 1806112 1806112 C T FGFR3 Silent p.L379L 0.82 TCGA-GU-A42R-01 4 186111756 186111756 C T KIAA1430 Missense_Mutation p.D199N 0.81 tolerated(0.44) benign(0.169) TCGA-GU-A42R-01 4 189061706 189061706 C G TRIML1 Missense_Mutation p.L145V 0.75 tolerated(0.97) benign(0.12) TCGA-GU-A42R-01 5 125967431 125967431 C A C5orf48 Missense_Mutation p.A2D 0.24 deleterious_low_confidence(0) benign(0.43) TCGA-GU-A42R-01 5 125967495 125967495 C G C5orf48 Silent p.L23L 0.28 TCGA-GU-A42R-01 5 127654607 127654607 C T FBN2 Missense_Mutation p.G1520S 0.23 deleterious(0) probably_damaging(0.98) TCGA-GU-A42R-01 5 140744002 140744002 G A PCDHGA5 Missense_Mutation p.M35I 0.41 tolerated_low_confidence(0.24) benign(0.006) TCGA-GU-A42R-01 5 158634612 158634612 G C RNF145 Intron 0.29 TCGA-GU-A42R-01 5 161494984 161494984 G C GABRG2 5'UTR 0.38 TCGA-GU-A42R-01 5 176951275 176951275 G A FAM193B Missense_Mutation p.S736L 0.50 deleterious(0.04) benign(0.253) TCGA-GU-A42R-01 5 179151700 179151700 C T CANX Nonsense_Mutation p.Q521* 0.33 TCGA-GU-A42R-01 5 34823332 34823332 G C RAI14 Missense_Mutation p.R465P 0.35 tolerated(0.12) possibly_damaging(0.67) TCGA-GU-A42R-01 5 34823439 34823439 G C RAI14 Missense_Mutation p.E501Q 0.44 deleterious(0.04) probably_damaging(0.984) TCGA-GU-A42R-01 5 34824386 34824386 G C RAI14 Missense_Mutation p.E816D 0.32 deleterious(0.02) probably_damaging(0.947) TCGA-GU-A42R-01 5 37173929 37173929 G A C5orf42 Silent p.F2033F 0.42 TCGA-GU-A42R-01 5 37816164 37816164 C T GDNF Silent p.L92L 0.31 TCGA-GU-A42R-01 5 43628317 43628317 A G NNT Silent p.E264E 0.33 TCGA-GU-A42R-01 5 5237159 5237159 G A ADAMTS16 Missense_Mutation p.G701R 0.29 deleterious(0) probably_damaging(0.998) TCGA-GU-A42R-01 5 54640370 54640370 A G SKIV2L2 Silent p.T309T 0.32 TCGA-GU-A42R-01 5 74984960 74984960 C T POC5 Missense_Mutation p.E336K 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-GU-A42R-01 5 79837742 79837742 G A FAM151B 3'UTR 0.50 TCGA-GU-A42R-01 5 86670043 86670043 C T RASA1 Missense_Mutation p.P614S 0.47 deleterious(0.01) benign(0.393) TCGA-GU-A42R-01 6 109471320 109471320 G C CEP57L1 Splice_Site p.X114_splice 0.69 TCGA-GU-A42R-01 6 26022231 26022231 C T HIST1H4A 3'UTR 0.27 TCGA-GU-A42R-01 6 31760563 31760563 G A VARS Missense_Mutation p.S211L 0.72 tolerated(0.14) benign(0.011) TCGA-GU-A42R-01 6 46977913 46977913 G C GPR110 Missense_Mutation p.L420V 0.23 tolerated(0.1) possibly_damaging(0.837) TCGA-GU-A42R-01 6 56480971 56480971 C T DST Intron 0.55 TCGA-GU-A42R-01 6 57512667 57512667 G A PRIM2 3'UTR 0.09 TCGA-GU-A42R-01 6 90327727 90327727 C G ANKRD6 Missense_Mutation p.L257V 0.56 deleterious(0.01) probably_damaging(0.949) TCGA-GU-A42R-01 7 104753361 104753361 C G KMT2E Missense_Mutation p.P1720A 0.46 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-GU-A42R-01 7 104753834 104753834 C G KMT2E 3'UTR 0.47 TCGA-GU-A42R-01 7 107335098 107335098 G T SLC26A4 Silent p.L458L 0.36 TCGA-GU-A42R-01 7 128470904 128470904 C T FLNC Silent p.I71I 0.29 TCGA-GU-A42R-01 7 142124196 142124196 G A TRBV6-8 Silent p.L94L 0.34 TCGA-GU-A42R-01 7 150174632 150174632 C T GIMAP8 Missense_Mutation p.R588W 0.41 deleterious(0) possibly_damaging(0.476) TCGA-GU-A42R-01 7 150767332 150767332 C T SLC4A2 Silent p.L450L 0.37 TCGA-GU-A42R-01 7 15430465 15430465 C T AGMO Missense_Mutation p.G248R 0.39 deleterious(0) probably_damaging(0.997) TCGA-GU-A42R-01 7 16913467 16913467 C T AGR3 Missense_Mutation p.G37E 0.37 deleterious(0.01) possibly_damaging(0.772) TCGA-GU-A42R-01 7 24784190 24784190 G C DFNA5 Missense_Mutation p.S132C 0.44 tolerated(0.08) probably_damaging(0.909) TCGA-GU-A42R-01 7 24856260 24856260 G A OSBPL3 Missense_Mutation p.P666S 0.39 tolerated(0.16) possibly_damaging(0.697) TCGA-GU-A42R-01 7 6045538 6045538 C G PMS2 Missense_Mutation p.G50R 0.32 deleterious(0) probably_damaging(0.995) TCGA-GU-A42R-01 7 91603051 91603051 T C AKAP9 Silent p.A25A 0.35 TCGA-GU-A42R-01 7 99096378 99096378 C T ZNF394 Missense_Mutation p.E182K 0.32 tolerated(0.16) possibly_damaging(0.802) TCGA-GU-A42R-01 8 109240615 109240615 C G EIF3E Silent p.V201V 0.33 TCGA-GU-A42R-01 8 133047065 133047065 C T OC90 Silent p.Q232Q 0.33 TCGA-GU-A42R-01 8 22052270 22052270 C T BMP1 Silent p.L493L 0.38 TCGA-GU-A42R-01 8 38095721 38095721 C A DDHD2 Missense_Mutation p.H206N 0.33 tolerated(0.06) benign(0.32) TCGA-GU-A42R-01 8 38853964 38853964 C T TM2D2 5'UTR 0.48 TCGA-GU-A42R-01 8 8560467 8560467 G - CLDN23 Frame_Shift_Del p.E187Sfs*110 0.64 TCGA-GU-A42R-01 9 116854869 116854869 G A KIF12 Silent p.P412P 0.71 TCGA-GU-A42R-01 9 37746352 37746352 G A FRMPD1 Silent p.G1441G 0.31 TCGA-GU-A42R-01 9 99381613 99381613 G C CDC14B Silent p.P16P 0.67 TCGA-GU-A42R-01 X 38135986 38135986 C G TM4SF2 Intron 0.64 TCGA-GU-A42R-01 X 44966676 44966676 G A KDM6A Silent p.L1300L 0.79 TCGA-GU-A42R-01 X 44969330 44969330 G T KDM6A Missense_Mutation p.V1338F 0.61 deleterious(0) probably_damaging(0.987) TCGA-GU-A42R-01 X 48925201 48925201 C T CCDC120 Silent p.L482L 0.72 TCGA-GU-A42R-01 X 49020922 49020922 T C MAGIX Intron 0.83 TCGA-GU-A42R-01 X 70351453 70351453 C T MED12 Silent p.I1367I 0.70 TCGA-GU-A42R-01 X 73812256 73812256 T C RLIM Silent p.A298A 0.69 TCGA-GU-A762-01 10 11990496 11990496 C T UPF2 Missense_Mutation p.D1016N 0.24 tolerated(0.38) benign(0.021) TCGA-GU-A762-01 10 125769694 125769694 C T CHST15 Missense_Mutation p.D553N 0.16 tolerated(0.61) benign(0.414) TCGA-GU-A762-01 10 27702832 27702832 G T PTCHD3 Silent p.T116T 0.22 TCGA-GU-A762-01 10 5014868 5014868 G A AKR1C1 Missense_Mutation p.R258H 0.18 deleterious(0.04) possibly_damaging(0.806) TCGA-GU-A762-01 10 5541089 5541089 G T CALML5 Silent p.R105R 0.20 TCGA-GU-A762-01 10 71008449 71008449 T G HKDC1 Missense_Mutation p.L512R 0.24 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 11 118772231 118772231 C A BCL9L Nonsense_Mutation p.E741* 0.24 TCGA-GU-A762-01 11 132204947 132204947 C T NTM Silent p.G325G 0.26 TCGA-GU-A762-01 11 132399055 132399055 G A OPCML Silent p.S142S 0.24 TCGA-GU-A762-01 11 132399057 132399057 A G OPCML Missense_Mutation p.S142P 0.24 deleterious(0) probably_damaging(0.962) TCGA-GU-A762-01 11 1606354 1606354 G T KRTAP5-1 Nonsense_Mutation p.C42* 0.12 TCGA-GU-A762-01 11 62284897 62284897 G T AHNAK Silent p.P5664P 0.17 TCGA-GU-A762-01 11 64361272 64361272 C G SLC22A12 Missense_Mutation p.S276C 0.31 deleterious(0.04) probably_damaging(0.975) TCGA-GU-A762-01 11 67818327 67818327 G C TCIRG1 3'UTR 0.19 TCGA-GU-A762-01 11 68773592 68773592 G A MRGPRF Silent p.N62N 0.22 TCGA-GU-A762-01 11 92085269 92085269 G T FAT3 5'UTR 0.30 TCGA-GU-A762-01 12 112638499 112638499 C T HECTD4 Missense_Mutation p.R2691Q 0.19 probably_damaging(0.956) TCGA-GU-A762-01 12 130963540 130963540 G A RIMBP2 Missense_Mutation p.R7W 0.30 deleterious(0) probably_damaging(0.976) TCGA-GU-A762-01 12 18435432 18435432 C T PIK3C2G Silent p.S139S 0.17 TCGA-GU-A762-01 12 22218247 22218247 A C CMAS 3'UTR 0.39 TCGA-GU-A762-01 12 40619404 40619404 G A LRRK2 Missense_Mutation p.V67I 0.34 tolerated(0.1) probably_damaging(0.994) TCGA-GU-A762-01 12 49448705 49448705 G A KMT2D Nonsense_Mutation p.Q52* 0.22 TCGA-GU-A762-01 12 53873270 53873270 C A PCBP2 3'UTR 0.25 TCGA-GU-A762-01 12 64202765 64202765 G A TMEM5 Missense_Mutation p.E409K 0.14 tolerated(0.2) benign(0.002) TCGA-GU-A762-01 12 95660159 95660159 T - VEZT Frame_Shift_Del p.S155Afs*20 0.16 TCGA-GU-A762-01 13 113052371 113052371 C A SPACA7 Missense_Mutation p.L54M 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-GU-A762-01 13 72147054 72147054 T A DACH1 Missense_Mutation p.N408I 0.13 probably_damaging(0.983) TCGA-GU-A762-01 14 103410592 103410592 C A CDC42BPB Silent p.V1348V 0.33 TCGA-GU-A762-01 14 106845557 106845557 G T IGHV3-35 Silent p.L39L 0.22 TCGA-GU-A762-01 14 22217818 22217818 A C TRAV5 Missense_Mutation p.K57Q 0.15 tolerated(0.11) probably_damaging(0.995) TCGA-GU-A762-01 14 23559758 23559758 C T ACIN1 Missense_Mutation p.E155K 0.21 probably_damaging(0.98) TCGA-GU-A762-01 14 60591773 60591773 G T PCNXL4 Missense_Mutation p.A728S 0.25 tolerated(0.21) benign(0.034) TCGA-GU-A762-01 14 93428702 93428702 C T ITPK1 Missense_Mutation p.E168K 0.29 tolerated(0.24) benign(0.193) TCGA-GU-A762-01 15 39885392 39885392 G A THBS1 Missense_Mutation p.V987I 0.13 tolerated(0.1) probably_damaging(0.974) TCGA-GU-A762-01 15 48808511 48808511 G T FBN1 Missense_Mutation p.P399Q 0.20 benign(0.216) TCGA-GU-A762-01 15 60741808 60741808 G A NARG2 Missense_Mutation p.S453F 0.26 deleterious(0.01) possibly_damaging(0.665) TCGA-GU-A762-01 16 67286737 67286737 T G SLC9A5 Silent p.A160A 0.12 TCGA-GU-A762-01 16 67331521 67331521 G A KCTD19 Silent p.S344S 0.08 TCGA-GU-A762-01 16 69377389 69377389 G C TMED6 Missense_Mutation p.S215C 0.16 deleterious(0) probably_damaging(0.999) TCGA-GU-A762-01 16 70557413 70557413 G C COG4 Missense_Mutation p.P12A 0.18 tolerated_low_confidence(0.44) benign(0) TCGA-GU-A762-01 16 9858209 9858209 C A GRIN2A Silent p.T1064T 0.35 TCGA-GU-A762-01 17 26976037 26976037 C A SDF2 Missense_Mutation p.L202F 0.25 tolerated(0.13) benign(0.001) TCGA-GU-A762-01 17 26976066 26976066 C T SDF2 Missense_Mutation p.G193S 0.19 deleterious(0) probably_damaging(0.966) TCGA-GU-A762-01 17 28706484 28706484 C T CPD Silent p.R162R 0.28 TCGA-GU-A762-01 17 30796143 30796143 C G PSMD11 Missense_Mutation p.S192C 0.20 deleterious(0) possibly_damaging(0.887) TCGA-GU-A762-01 17 33266325 33266325 C T CCT6B Missense_Mutation p.E364K 0.19 deleterious(0.02) possibly_damaging(0.838) TCGA-GU-A762-01 17 38250067 38250067 C T THRA 3'UTR 0.36 TCGA-GU-A762-01 17 40997326 40997326 C G AOC2 Nonsense_Mutation p.S228* 0.28 TCGA-GU-A762-01 17 4461929 4461929 G A GGT6 Missense_Mutation p.S288L 0.38 tolerated(0.32) benign(0.001) TCGA-GU-A762-01 17 48462537 48462537 G C LRRC59 Silent p.L206L 0.25 TCGA-GU-A762-01 17 71281696 71281696 G C CDC42EP4 Nonsense_Mutation p.S315* 0.19 TCGA-GU-A762-01 17 74071075 74071075 C T GALR2 Silent p.L37L 0.27 TCGA-GU-A762-01 17 7578195 7578195 C T TP53 Silent p.V218V 0.14 TCGA-GU-A762-01 17 7578196 7578196 A T TP53 Missense_Mutation p.V218E 0.17 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 18 19762725 19762725 G T GATA6 Missense_Mutation p.R479I 0.24 deleterious(0) probably_damaging(0.996) TCGA-GU-A762-01 18 19762738 19762738 G A GATA6 Missense_Mutation p.M483I 0.25 deleterious(0) probably_damaging(0.942) TCGA-GU-A762-01 18 3879117 3879117 G A DLGAP1 Silent p.L318L 0.14 TCGA-GU-A762-01 18 48591925 48591925 G C SMAD4 Missense_Mutation p.C363S 0.36 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 19 22941631 22941631 C A ZNF99 Missense_Mutation p.E360D 0.19 deleterious(0.02) benign(0.388) TCGA-GU-A762-01 19 31039856 31039856 C A ZNF536 Missense_Mutation p.D1110E 0.27 tolerated_low_confidence(0.2) benign(0.008) TCGA-GU-A762-01 19 37880656 37880656 C G ZNF527 Missense_Mutation p.L569V 0.16 deleterious(0) probably_damaging(0.999) TCGA-GU-A762-01 19 43579694 43579694 G A PSG2 Missense_Mutation p.P174L 0.17 deleterious(0.04) possibly_damaging(0.707) TCGA-GU-A762-01 19 54417759 54417759 G C CACNG7 Missense_Mutation p.E68Q 0.21 tolerated(0.36) benign(0.134) TCGA-GU-A762-01 19 55087360 55087360 C A LILRA2 Silent p.R347R 0.26 TCGA-GU-A762-01 19 8183904 8183904 C T FBN3 Missense_Mutation p.V1072M 0.31 deleterious(0) benign(0.217) TCGA-GU-A762-01 1 152286728 152286728 C G FLG Missense_Mutation p.E212Q 0.44 possibly_damaging(0.637) TCGA-GU-A762-01 1 16269047 16269047 G A ZBTB17 Missense_Mutation p.A672V 0.22 deleterious(0.03) probably_damaging(0.972) TCGA-GU-A762-01 1 16378722 16378722 C T CLCNKB Missense_Mutation p.H480Y 0.07 deleterious(0.04) benign(0.248) TCGA-GU-A762-01 1 53728130 53728130 C T LRP8 Missense_Mutation p.G588R 0.10 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 1 94140409 94140409 G A BCAR3 Silent p.D26D 0.26 TCGA-GU-A762-01 20 30919058 30919058 C T KIF3B Missense_Mutation p.S727F 0.24 deleterious(0.04) possibly_damaging(0.485) TCGA-GU-A762-01 20 30919067 30919067 C G KIF3B Nonsense_Mutation p.S730* 0.26 TCGA-GU-A762-01 20 44642382 44642382 A G MMP9 Missense_Mutation p.K566R 0.21 tolerated(0.48) probably_damaging(0.945) TCGA-GU-A762-01 20 44642386 44642386 G A MMP9 Silent p.L567L 0.18 TCGA-GU-A762-01 20 49508442 49508442 C T ADNP Missense_Mutation p.E937K 0.21 tolerated_low_confidence(0.33) benign(0.003) TCGA-GU-A762-01 20 60791706 60791706 G A HRH3 Missense_Mutation p.R232W 0.36 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 21 10910343 10910343 A T TPTE Silent p.P471P 0.13 TCGA-GU-A762-01 21 17198660 17198660 C A USP25 Missense_Mutation p.S481Y 0.26 tolerated(0.13) possibly_damaging(0.585) TCGA-GU-A762-01 21 34399432 34399432 T G OLIG2 Missense_Mutation p.S88A 0.18 tolerated(0.34) benign(0.003) TCGA-GU-A762-01 21 42771168 42771168 G C MX2 Missense_Mutation p.E440Q 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-GU-A762-01 21 46951372 46951372 C T SLC19A1 Missense_Mutation p.E294K 0.32 tolerated(0.39) benign(0.022) TCGA-GU-A762-01 22 21385718 21385718 G A SLC7A4 Silent p.I128I 0.27 TCGA-GU-A762-01 2 106694402 106694402 G T C2orf40 3'UTR 0.32 TCGA-GU-A762-01 2 179463516 179463516 G A TTN Missense_Mutation p.A18974V 0.13 TCGA-GU-A762-01 2 61721203 61721203 T A XPO1 Silent p.V357V 0.12 TCGA-GU-A762-01 2 70188395 70188395 G C ASPRV1 Silent p.L142L 0.22 TCGA-GU-A762-01 3 121435721 121435721 G C GOLGB1 Missense_Mutation p.S384C 0.24 benign(0.019) TCGA-GU-A762-01 3 121435852 121435852 G A GOLGB1 Silent p.F340F 0.24 TCGA-GU-A762-01 3 148714138 148714138 G C GYG1 Missense_Mutation p.D65H 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-GU-A762-01 3 157823777 157823777 C T SHOX2 Missense_Mutation p.D13N 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-A762-01 3 190366198 190366198 G C IL1RAP Intron 0.17 TCGA-GU-A762-01 3 21467133 21467133 G A ZNF385D Missense_Mutation p.R235W 0.10 deleterious(0) probably_damaging(0.973) TCGA-GU-A762-01 3 38835307 38835307 C T SCN10A Silent p.K65K 0.12 TCGA-GU-A762-01 3 52549520 52549520 C T STAB1 Nonsense_Mutation p.Q1316* 0.21 TCGA-GU-A762-01 3 52941649 52941649 C T SFMBT1 Silent p.K669K 0.13 TCGA-GU-A762-01 4 100336769 100336769 C G ADH7 Missense_Mutation p.L342F 0.19 tolerated(0.37) benign(0.019) TCGA-GU-A762-01 4 109571771 109571771 C G OSTC 5'Flank 0.17 TCGA-GU-A762-01 4 110882140 110882140 G A EGF Missense_Mutation p.C395Y 0.31 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 4 123301363 123301363 T A ADAD1 Missense_Mutation p.S47T 0.22 tolerated(0.54) benign(0.028) TCGA-GU-A762-01 4 166232654 166232654 G - KLHL2 Frame_Shift_Del p.E430Sfs*5 0.21 TCGA-GU-A762-01 4 187629504 187629505 CC - FAT1 Frame_Shift_Del p.G493* 0.26 TCGA-GU-A762-01 4 42145753 42145753 A C BEND4 Missense_Mutation p.F249C 0.25 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-GU-A762-01 4 57204807 57204807 C A AASDH Missense_Mutation p.V1020F 0.24 deleterious(0) probably_damaging(0.937) TCGA-GU-A762-01 4 66230861 66230861 C A EPHA5 Missense_Mutation p.V704L 0.24 deleterious(0) benign(0.052) TCGA-GU-A762-01 4 79856301 79856301 A G PAQR3 Missense_Mutation p.C108R 0.23 tolerated(0.13) benign(0.433) TCGA-GU-A762-01 4 83827689 83827689 G A THAP9 Silent p.K163K 0.21 TCGA-GU-A762-01 4 99325666 99325666 G T RAP1GDS1 Nonsense_Mutation p.E227* 0.23 TCGA-GU-A762-01 5 11159742 11159742 C T CTNND2 Missense_Mutation p.R702Q 0.41 tolerated(0.1) benign(0.015) TCGA-GU-A762-01 5 118506822 118506822 G A DMXL1 Silent p.L2112L 0.26 TCGA-GU-A762-01 5 133902013 133902013 C T JADE2 Missense_Mutation p.R393C 0.13 deleterious(0) probably_damaging(0.998) TCGA-GU-A762-01 5 140810257 140810257 G A PCDHGA12 5'UTR 0.31 TCGA-GU-A762-01 5 17275848 17275848 G - BASP1 Frame_Shift_Del p.G175Afs*49 0.48 TCGA-GU-A762-01 5 96332174 96332174 C G LNPEP Missense_Mutation p.F496L 0.33 tolerated(0.25) benign(0.05) TCGA-GU-A762-01 6 49582516 49582516 C A RHAG Nonsense_Mutation p.E231* 0.29 TCGA-GU-A762-01 6 52622666 52622666 C G GSTA2 Missense_Mutation p.G27A 0.31 deleterious(0) possibly_damaging(0.568) TCGA-GU-A762-01 7 12728394 12728394 G A ARL4A Missense_Mutation p.G172E 0.23 deleterious(0) probably_damaging(1) TCGA-GU-A762-01 7 127569277 127569277 C T SND1 Nonsense_Mutation p.Q522* 0.32 TCGA-GU-A762-01 8 124109637 124109637 C T TBC1D31 Missense_Mutation p.H263Y 0.22 tolerated(0.05) benign(0.003) TCGA-GU-A762-01 8 144732572 144732572 G C ZNF623 Missense_Mutation p.R177T 0.32 deleterious(0) probably_damaging(0.966) TCGA-GU-A762-01 8 144776541 144776541 C T ZNF707 Silent p.A319A 0.26 TCGA-GU-A762-01 8 25266349 25266349 G A DOCK5 Missense_Mutation p.S1766N 0.43 deleterious(0.02) possibly_damaging(0.786) TCGA-GU-A762-01 8 67755752 67755752 G A SGK3 Silent p.G348G 0.15 TCGA-GU-A762-01 8 95201434 95201434 G A CDH17 Missense_Mutation p.P44L 0.17 tolerated(0.32) benign(0.002) TCGA-GU-A762-01 9 115600832 115600832 T G SNX30 Missense_Mutation p.L290W 0.31 tolerated(0.13) possibly_damaging(0.903) TCGA-GU-A762-01 9 134027193 134027193 G C NUP214 Missense_Mutation p.R783T 0.25 benign(0.261) TCGA-GU-A762-01 9 5772654 5772654 C G KIAA1432 Missense_Mutation p.S1236C 0.10 tolerated(0.09) benign(0.093) TCGA-GU-A762-01 X 118223067 118223067 C G KIAA1210 Missense_Mutation p.S709T 0.29 deleterious(0.03) probably_damaging(0.909) TCGA-GU-A762-01 X 149818252 149818252 A G MTM1 Missense_Mutation p.I311V 0.07 deleterious(0.02) probably_damaging(0.942) TCGA-GU-A762-01 X 51239169 51239169 T C NUDT11 Missense_Mutation p.D43G 0.46 deleterious(0.01) benign(0.428) TCGA-GU-A763-01 11 117265193 117265193 G T CEP164 Missense_Mutation p.R915L 0.44 tolerated(0.21) benign(0.099) TCGA-GU-A763-01 11 3735128 3735128 C T NUP98 Missense_Mutation p.G833R 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-GU-A763-01 11 61539083 61539083 C A MYRF Silent p.A284A 0.08 TCGA-GU-A763-01 11 61539084 61539084 C A MYRF Missense_Mutation p.L285M 0.07 tolerated(0.07) probably_damaging(0.999) TCGA-GU-A763-01 11 62649377 62649377 G T SLC3A2 Missense_Mutation p.R248L 0.11 deleterious(0.02) benign(0.166) TCGA-GU-A763-01 11 65771121 65771121 C G BANF1 Missense_Mutation p.L50V 0.49 deleterious(0) probably_damaging(0.998) TCGA-GU-A763-01 12 100660830 100660830 G T DEPDC4 Missense_Mutation p.R9S 0.20 tolerated_low_confidence(0.4) benign(0.03) TCGA-GU-A763-01 12 105460399 105460399 G A ALDH1L2 Nonsense_Mutation p.Q215* 0.43 TCGA-GU-A763-01 12 105527552 105527552 G A KIAA1033 Missense_Mutation p.V402I 0.46 tolerated(0.22) benign(0.005) TCGA-GU-A763-01 12 121176691 121176691 G A ACADS Silent p.L334L 0.35 TCGA-GU-A763-01 12 18836142 18836142 T A PLCZ1 3'UTR 0.09 TCGA-GU-A763-01 12 38714753 38714753 C T ALG10B Missense_Mutation p.S387L 0.43 tolerated(0.08) benign(0.117) TCGA-GU-A763-01 12 49420214 49420214 G A KMT2D Missense_Mutation p.R5179C 0.55 unknown(0) TCGA-GU-A763-01 12 50822731 50822731 C G LARP4 Silent p.L60L 0.43 TCGA-GU-A763-01 12 6554531 6554531 T C CD27 Intron 0.50 TCGA-GU-A763-01 12 66308670 66308670 G A HMGA2 Intron 0.54 TCGA-GU-A763-01 12 68551986 68551986 C G IFNG Missense_Mutation p.L56F 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-GU-A763-01 12 7842975 7842975 G A GDF3 Silent p.F198F 0.29 TCGA-GU-A763-01 12 96360195 96360195 A G AMDHD1 Missense_Mutation p.I368V 0.48 deleterious(0) possibly_damaging(0.883) TCGA-GU-A763-01 13 26043218 26043218 C T ATP8A2 Silent p.L60L 0.41 TCGA-GU-A763-01 13 77807357 77807357 C G MYCBP2 Missense_Mutation p.E853Q 0.49 probably_damaging(0.968) TCGA-GU-A763-01 14 105415126 105415126 A T AHNAK2 Missense_Mutation p.L2221H 0.45 possibly_damaging(0.551) TCGA-GU-A763-01 14 47426709 47426709 G A MDGA2 Missense_Mutation p.R653W 0.33 deleterious(0.01) possibly_damaging(0.849) TCGA-GU-A763-01 14 88658717 88658717 G C KCNK10 Nonsense_Mutation p.S240* 0.48 TCGA-GU-A763-01 14 94849287 94849287 A C SERPINA1 Silent p.T96T 0.52 TCGA-GU-A763-01 14 95560459 95560459 C A DICER1 Silent p.A1710A 0.05 TCGA-GU-A763-01 15 33916036 33916036 G T RYR3 Nonsense_Mutation p.G796* 0.07 TCGA-GU-A763-01 15 33916037 33916037 G T RYR3 Missense_Mutation p.G796V 0.09 probably_damaging(1) TCGA-GU-A763-01 15 41277541 41277541 C G INO80 Missense_Mutation p.E1306Q 0.45 tolerated(0.23) probably_damaging(0.986) TCGA-GU-A763-01 15 63862666 63862666 C T USP3 Missense_Mutation p.R266C 0.42 deleterious(0) possibly_damaging(0.863) TCGA-GU-A763-01 15 75941918 75941918 C A SNX33 Silent p.R159R 0.07 TCGA-GU-A763-01 15 89172609 89172609 G A AEN Silent p.R231R 0.51 TCGA-GU-A763-01 16 80718571 80718571 G A CDYL2 Silent p.D160D 0.45 TCGA-GU-A763-01 16 89614466 89614466 A G SPG7 Silent p.G536G 0.43 TCGA-GU-A763-01 17 10555750 10555750 G C MYH3 Missense_Mutation p.S112C 0.49 tolerated(0.05) possibly_damaging(0.677) TCGA-GU-A763-01 17 29250086 29250086 G C ADAP2 Missense_Mutation p.E75Q 0.50 tolerated(0.28) probably_damaging(0.947) TCGA-GU-A763-01 19 11018764 11018764 G T CARM1 Silent p.L132L 0.14 TCGA-GU-A763-01 19 11018765 11018765 G T CARM1 Nonsense_Mutation p.E133* 0.14 TCGA-GU-A763-01 19 3544702 3544702 C G MFSD12 Intron 0.53 TCGA-GU-A763-01 19 44680000 44680000 A G ZNF226 Silent p.K195K 0.33 TCGA-GU-A763-01 19 50789753 50789753 G A MYH14 Silent p.E1518E 0.33 TCGA-GU-A763-01 19 56733103 56733103 G T ZSCAN5A Missense_Mutation p.D444E 0.32 tolerated(0.28) benign(0.02) TCGA-GU-A763-01 19 9075647 9075647 G A MUC16 Silent p.A3933A 0.62 TCGA-GU-A763-01 1 155912245 155912245 C T RXFP4 Missense_Mutation p.R249C 0.45 tolerated(0.17) benign(0.008) TCGA-GU-A763-01 1 156504506 156504506 T C IQGAP3 Missense_Mutation p.Y1176C 0.33 deleterious(0) probably_damaging(1) TCGA-GU-A763-01 1 158736090 158736090 C T OR6N1 Missense_Mutation p.R128Q 0.50 tolerated(0.12) benign(0.006) TCGA-GU-A763-01 1 179054987 179054987 A C TOR3A Missense_Mutation p.T200P 0.47 tolerated(0.12) benign(0.033) TCGA-GU-A763-01 1 179659906 179659906 G A TDRD5 Missense_Mutation p.R979H 0.46 tolerated(0.08) benign(0.282) TCGA-GU-A763-01 1 6215671 6215671 C T CHD5 Missense_Mutation p.S165N 0.37 deleterious(0.05) probably_damaging(0.996) TCGA-GU-A763-01 1 97278257 97278267 TCTTTTTATAG - PTBP2 Splice_Site p.X391_splice 0.28 TCGA-GU-A763-01 20 5528321 5528321 C A GPCPD1 Missense_Mutation p.V669L 0.08 tolerated_low_confidence(1) benign(0) TCGA-GU-A763-01 22 45244928 45244928 C G ARHGAP8 Missense_Mutation p.L411V 0.48 tolerated(0.32) benign(0.07) TCGA-GU-A763-01 2 100623295 100623295 G - AFF3 Frame_Shift_Del p.S250Afs*11 0.23 TCGA-GU-A763-01 2 109088531 109088531 A G GCC2 Missense_Mutation p.K916E 0.35 deleterious(0.01) benign(0.283) TCGA-GU-A763-01 2 167992560 167992560 C T XIRP2 Missense_Mutation p.R184C 0.42 benign(0.319) TCGA-GU-A763-01 2 169659107 169659107 C G NOSTRIN 5'UTR 0.53 TCGA-GU-A763-01 2 203630259 203630259 C A FAM117B Silent p.L514L 0.43 TCGA-GU-A763-01 2 54122193 54122193 C T PSME4 Missense_Mutation p.G1288D 0.48 deleterious(0.04) benign(0.01) TCGA-GU-A763-01 3 113085025 113085025 C T WDR52 Missense_Mutation p.G859E 0.19 deleterious(0) probably_damaging(1) TCGA-GU-A763-01 3 113085026 113085026 C A WDR52 Nonsense_Mutation p.G859* 0.21 TCGA-GU-A763-01 3 123426754 123426754 C T MYLK Missense_Mutation p.G746D 0.44 deleterious(0) probably_damaging(0.982) TCGA-GU-A763-01 3 133099308 133099308 G A TMEM108 Silent p.Q251Q 0.46 TCGA-GU-A763-01 3 178560595 178560595 C G KCNMB2 Missense_Mutation p.S193C 0.49 deleterious(0.03) possibly_damaging(0.621) TCGA-GU-A763-01 3 89499486 89499486 G A EPHA3 Missense_Mutation p.G886S 0.43 tolerated(0.87) benign(0.002) TCGA-GU-A763-01 3 97596351 97596351 C T CRYBG3 Missense_Mutation p.P157S 0.49 deleterious(0) probably_damaging(1) TCGA-GU-A763-01 4 110737358 110737358 G C GAR1 Missense_Mutation p.R13P 0.46 deleterious_low_confidence(0.04) unknown(0) TCGA-GU-A763-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.33 deleterious(0.01) possibly_damaging(0.594) TCGA-GU-A763-01 4 189068146 189068146 T C TRIML1 Missense_Mutation p.W343R 0.53 deleterious(0) benign(0.134) TCGA-GU-A763-01 4 42403329 42403329 C T SHISA3 Missense_Mutation p.P193L 0.56 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-GU-A763-01 5 127624923 127624923 C T FBN2 Missense_Mutation p.S2178N 0.36 tolerated(1) benign(0.009) TCGA-GU-A763-01 5 140605022 140605022 G A PCDHB14 Missense_Mutation p.E649K 0.26 deleterious_low_confidence(0.01) benign(0.36) TCGA-GU-A763-01 5 175110581 175110581 C T HRH2 Silent p.D115D 0.07 TCGA-GU-A763-01 6 12124951 12124951 G A HIVEP1 Silent p.Q1641Q 0.43 TCGA-GU-A763-01 6 17633031 17633031 G A NUP153 Silent p.L837L 0.42 TCGA-GU-A763-01 6 2683370 2683370 C T MYLK4 Missense_Mutation p.R191H 0.11 deleterious(0) probably_damaging(0.996) TCGA-GU-A763-01 6 44221085 44221085 C G HSP90AB1 Missense_Mutation p.R679G 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-GU-A763-01 7 11078469 11078469 G A PHF14 Missense_Mutation p.R688K 0.44 tolerated(1) benign(0.001) TCGA-GU-A763-01 7 131195587 131195587 G T PODXL Missense_Mutation p.L236I 0.06 tolerated(0.43) benign(0.019) TCGA-GU-A763-01 7 40085528 40085528 C A CDK13 Nonsense_Mutation p.S816* 0.39 TCGA-GU-A763-01 8 121259915 121259915 C T COL14A1 Missense_Mutation p.T848M 0.52 deleterious(0) possibly_damaging(0.861) TCGA-GU-A763-01 8 145007406 145007406 G A PLEC Silent p.L596L 0.34 TCGA-GU-A763-01 9 135201796 135201796 G C SETX Nonsense_Mutation p.S1730* 0.91 TCGA-GU-A763-01 X 128582370 128582371 - T SMARCA1 Frame_Shift_Ins p.N1027Kfs*5 0.46 TCGA-GU-A763-01 X 63410941 63410941 C T AMER1 Silent p.R742R 1.00 TCGA-GU-A763-01 X 77268538 77268538 A G ATP7A Missense_Mutation p.T779A 0.97 deleterious(0) probably_damaging(0.998) TCGA-GU-A764-01 10 101824949 101824949 T C CPN1 Missense_Mutation p.Q252R 0.12 tolerated(0.95) benign(0.003) TCGA-GU-A764-01 10 112838068 112838068 C T ADRA2A Missense_Mutation p.S105L 0.15 deleterious(0) probably_damaging(0.986) TCGA-GU-A764-01 10 11505035 11505035 G A USP6NL Missense_Mutation p.S648F 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-GU-A764-01 10 118896003 118896003 G T VAX1 Missense_Mutation p.L137I 0.15 deleterious(0.01) benign(0.027) TCGA-GU-A764-01 10 50947753 50947753 C T OGDHL Missense_Mutation p.R758Q 0.09 tolerated(0.57) possibly_damaging(0.9) TCGA-GU-A764-01 10 54074137 54074138 - A DKK1 5'UTR 0.17 TCGA-GU-A764-01 10 69571357 69571357 G A DNAJC12 Silent p.R74R 0.05 TCGA-GU-A764-01 10 95931032 95931032 C T PLCE1 Nonsense_Mutation p.Q530* 0.05 TCGA-GU-A764-01 11 123887206 123887206 C G OR10G4 Missense_Mutation p.Q309E 0.06 tolerated(0.38) benign(0.003) TCGA-GU-A764-01 11 15267683 15267683 C G INSC 3'UTR 0.25 TCGA-GU-A764-01 11 1605691 1605691 G T KRTAP5-1 Nonsense_Mutation p.C263* 0.05 TCGA-GU-A764-01 11 16362690 16362690 T G SOX6 Missense_Mutation p.Q35H 0.09 tolerated_low_confidence(0.13) benign(0.003) TCGA-GU-A764-01 11 16362692 16362692 G T SOX6 Missense_Mutation p.Q35K 0.10 tolerated_low_confidence(0.71) benign(0.039) TCGA-GU-A764-01 11 17793763 17793763 T G KCNC1 Missense_Mutation p.N374K 0.11 tolerated(0.1) benign(0.073) TCGA-GU-A764-01 11 18232136 18232136 G A RP11-113D6.10 3'UTR 0.40 TCGA-GU-A764-01 11 32414241 32414241 T A WT1 Missense_Mutation p.Q437L 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-GU-A764-01 11 46701310 46701310 G A ARHGAP1 Silent p.F305F 0.07 TCGA-GU-A764-01 11 55371010 55371010 G C OR4C11 Silent p.L280L 0.13 TCGA-GU-A764-01 11 55655653 55655653 G C TRIM51 Missense_Mutation p.R218T 0.10 tolerated(0.55) possibly_damaging(0.71) TCGA-GU-A764-01 11 58189967 58189967 G C OR5B2 Missense_Mutation p.I256M 0.05 tolerated_low_confidence(1) benign(0.001) TCGA-GU-A764-01 11 60643148 60643148 C G ZP1 3'UTR 0.14 TCGA-GU-A764-01 11 64029114 64029114 C T PLCB3 Silent p.T630T 0.13 TCGA-GU-A764-01 11 65303745 65303745 C T SCYL1 Missense_Mutation p.R531W 0.08 deleterious(0) possibly_damaging(0.886) TCGA-GU-A764-01 11 66618633 66618633 C T PC Missense_Mutation p.E701K 0.27 deleterious(0) probably_damaging(1) TCGA-GU-A764-01 12 117909092 117909092 C T KSR2 Nonsense_Mutation p.W872* 0.17 TCGA-GU-A764-01 12 1755052 1755052 C A WNT5B Missense_Mutation p.F238L 0.07 deleterious(0) probably_damaging(0.994) TCGA-GU-A764-01 12 25679784 25679784 G A IFLTD1 Silent p.L199L 0.10 TCGA-GU-A764-01 12 49165627 49165627 G C ADCY6 Missense_Mutation p.Q973E 0.13 tolerated(0.32) benign(0.201) TCGA-GU-A764-01 12 49165690 49165690 G C ADCY6 Missense_Mutation p.L952V 0.10 deleterious(0) benign(0.358) TCGA-GU-A764-01 12 56435950 56435950 G C RPS26 5'UTR 0.16 TCGA-GU-A764-01 12 56436330 56436330 G T RPS26 Missense_Mutation p.R42L 0.10 deleterious(0.02) possibly_damaging(0.518) TCGA-GU-A764-01 12 59272672 59272672 C T LRIG3 Missense_Mutation p.V673I 0.07 tolerated(0.29) possibly_damaging(0.669) TCGA-GU-A764-01 12 71286579 71286579 C T PTPRR Silent p.Q79Q 0.11 TCGA-GU-A764-01 13 38320317 38320317 G A TRPC4 Silent p.L218L 0.06 TCGA-GU-A764-01 13 49050884 49050891 CCGTGTGC - RB1 Frame_Shift_Del p.R857Qfs*5 0.13 TCGA-GU-A764-01 14 106725417 106725417 T C IGHV3-23 Silent p.G45G 0.04 TCGA-GU-A764-01 14 23528368 23528368 C T ACIN1 Missense_Mutation p.G1339R 0.08 unknown(0) TCGA-GU-A764-01 14 23528406 23528406 C A ACIN1 Missense_Mutation p.R1326I 0.08 unknown(0) TCGA-GU-A764-01 14 35227931 35227931 C T BAZ1A Silent p.L1455L 0.07 TCGA-GU-A764-01 14 39565302 39565302 G A SEC23A Silent p.F7F 0.08 TCGA-GU-A764-01 14 68282653 68282653 C T ZFYVE26 Missense_Mutation p.A10T 0.14 tolerated(1) benign(0.001) TCGA-GU-A764-01 14 96783652 96783652 C T ATG2B Missense_Mutation p.E1014K 0.07 tolerated(0.29) benign(0.108) TCGA-GU-A764-01 15 42211787 42211787 G A EHD4 Missense_Mutation p.A182V 0.19 deleterious(0) possibly_damaging(0.457) TCGA-GU-A764-01 15 58471341 58471341 G C AQP9 Missense_Mutation p.M170I 0.15 deleterious(0.02) benign(0.143) TCGA-GU-A764-01 15 75714955 75714955 T A SIN3A Intron 0.17 TCGA-GU-A764-01 15 89453027 89453027 C T MFGE8 Silent p.E67E 0.20 TCGA-GU-A764-01 15 93015519 93015519 G A C15orf32 Silent p.A47A 0.17 TCGA-GU-A764-01 16 15853444 15853444 C G MYH11 Missense_Mutation p.E471Q 0.10 probably_damaging(0.999) TCGA-GU-A764-01 16 19194874 19194874 C T SYT17 Missense_Mutation p.S119F 0.04 deleterious(0) possibly_damaging(0.603) TCGA-GU-A764-01 16 51173340 51173340 C T SALL1 Silent p.P931P 0.10 TCGA-GU-A764-01 16 53721857 53721857 C G RPGRIP1L Missense_Mutation p.D184H 0.04 deleterious(0.01) benign(0.396) TCGA-GU-A764-01 16 56466629 56466629 T C NUDT21 Missense_Mutation p.N227D 0.11 deleterious(0.01) benign(0.228) TCGA-GU-A764-01 16 602999 603001 GCG - CAPN15 In_Frame_Del p.G1015del 0.27 TCGA-GU-A764-01 16 67650756 67650756 C A CTCF Missense_Mutation p.S354Y 0.15 deleterious(0) possibly_damaging(0.544) TCGA-GU-A764-01 17 39976518 39976518 C T FKBP10 Intron 0.11 TCGA-GU-A764-01 17 43226866 43226866 C G HEXIM1 Missense_Mutation p.F103L 0.19 tolerated_low_confidence(0.46) benign(0.009) TCGA-GU-A764-01 17 54921496 54921496 C G DGKE Missense_Mutation p.S194C 0.14 tolerated(0.06) benign(0.001) TCGA-GU-A764-01 17 61972434 61972434 G A CSH1 Missense_Mutation p.T201I 0.05 deleterious(0) probably_damaging(0.999) TCGA-GU-A764-01 17 66267541 66267541 G C SLC16A6 Missense_Mutation p.H254D 0.13 tolerated(0.49) benign(0.002) TCGA-GU-A764-01 17 72916238 72916238 G A USH1G Silent p.F231F 0.12 TCGA-GU-A764-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.24 deleterious(0) probably_damaging(1) TCGA-GU-A764-01 17 76420105 76420105 C A DNAH17 Missense_Mutation p.C4447F 0.05 probably_damaging(0.999) TCGA-GU-A764-01 17 76521178 76521178 G A DNAH17 Silent p.F1255F 0.19 TCGA-GU-A764-01 17 77043909 77043909 C T C1QTNF1 Silent p.F195F 0.18 TCGA-GU-A764-01 18 14479197 14479197 T A CXADRP3 RNA 0.09 TCGA-GU-A764-01 18 33702200 33702200 C T SLC39A6 Missense_Mutation p.E392K 0.12 tolerated(0.1) probably_damaging(0.965) TCGA-GU-A764-01 18 50432517 50432517 C G DCC Missense_Mutation p.H172Q 0.08 deleterious(0.03) benign(0.003) TCGA-GU-A764-01 18 56202767 56202767 G C ALPK2 Missense_Mutation p.A1551G 0.10 deleterious(0.02) benign(0.169) TCGA-GU-A764-01 18 71822615 71822615 G C TIMM21 Missense_Mutation p.E147Q 0.20 deleterious(0.04) probably_damaging(0.93) TCGA-GU-A764-01 19 10403796 10403796 G C ICAM5 Missense_Mutation p.D447H 0.18 deleterious(0.04) possibly_damaging(0.865) TCGA-GU-A764-01 19 14828480 14828480 C T ZNF333 Nonsense_Mutation p.Q279* 0.08 TCGA-GU-A764-01 19 36223364 36223364 G C KMT2B Missense_Mutation p.D1972H 0.09 probably_damaging(0.99) TCGA-GU-A764-01 19 36223404 36223404 G C KMT2B Missense_Mutation p.G1985A 0.12 benign(0.01) TCGA-GU-A764-01 19 37916781 37916781 C G ZNF569 Missense_Mutation p.R76T 0.03 tolerated(0.23) benign(0.022) TCGA-GU-A764-01 19 3823264 3823264 C A ZFR2 Missense_Mutation p.G451C 0.05 deleterious(0) probably_damaging(0.998) TCGA-GU-A764-01 19 46915552 46915552 G A CCDC8 Silent p.R172R 0.16 TCGA-GU-A764-01 19 54759394 54759394 C G LILRB5 Missense_Mutation p.R236P 0.07 tolerated(1) benign(0.005) TCGA-GU-A764-01 19 55494936 55494936 C G NLRP2 Missense_Mutation p.Q624E 0.65 tolerated(0.27) benign(0.116) TCGA-GU-A764-01 19 55501940 55501940 C G NLRP2 Missense_Mutation p.L870V 0.03 deleterious(0) probably_damaging(0.997) TCGA-GU-A764-01 19 8841445 8841445 A T OR2Z1 Missense_Mutation p.S19C 0.06 deleterious(0.01) possibly_damaging(0.778) TCGA-GU-A764-01 1 109822680 109822680 G C PSRC1 3'UTR 0.10 TCGA-GU-A764-01 1 144886194 144886194 G A PDE4DIP Missense_Mutation p.H1014Y 0.09 deleterious(0.02) possibly_damaging(0.773) TCGA-GU-A764-01 1 147091147 147091147 G A BCL9 Missense_Mutation p.D396N 0.05 tolerated(0.21) probably_damaging(0.98) TCGA-GU-A764-01 1 147230611 147230611 C G GJA5 Missense_Mutation p.A246P 0.06 tolerated(0.27) benign(0.002) TCGA-GU-A764-01 1 149916098 149916098 G A OTUD7B Silent p.F730F 0.33 TCGA-GU-A764-01 1 149916737 149916737 G C OTUD7B Silent p.L517L 0.27 TCGA-GU-A764-01 1 151134552 151134552 G A LYSMD1 Missense_Mutation p.R69C 0.05 deleterious(0) probably_damaging(1) TCGA-GU-A764-01 1 151314539 151314539 C T RFX5 3'UTR 0.11 TCGA-GU-A764-01 1 158617376 158617376 C G SPTA1 Missense_Mutation p.E1283D 0.07 tolerated(0.2) benign(0.039) TCGA-GU-A764-01 1 158637680 158637680 C A SPTA1 Missense_Mutation p.W669L 0.06 deleterious(0) probably_damaging(1) TCGA-GU-A764-01 1 159272183 159272183 T C FCER1A Missense_Mutation p.L10P 0.08 deleterious(0.05) benign(0.187) TCGA-GU-A764-01 1 161512669 161512669 G T FCGR3A 3'UTR 0.16 TCGA-GU-A764-01 1 17331214 17331214 C G ATP13A2 Missense_Mutation p.K150N 0.12 tolerated(0.12) benign(0.102) TCGA-GU-A764-01 1 190068039 190068039 G T BRINP3 Missense_Mutation p.S470R 0.08 tolerated(0.32) benign(0.067) TCGA-GU-A764-01 1 193070330 193070330 C G GLRX2 Missense_Mutation p.E43Q 0.09 tolerated(0.07) possibly_damaging(0.628) TCGA-GU-A764-01 1 227075809 227075809 G C PSEN2 Missense_Mutation p.L172F 0.18 deleterious(0) probably_damaging(0.976) TCGA-GU-A764-01 1 248366468 248366468 C A OR2M3 Silent p.A33A 0.12 TCGA-GU-A764-01 1 51032798 51032798 T G FAF1 Missense_Mutation p.N407H 0.14 tolerated(0.21) possibly_damaging(0.638) TCGA-GU-A764-01 1 64608152 64608152 G A ROR1 Silent p.G331G 0.05 TCGA-GU-A764-01 1 74671095 74671095 C G FPGT Missense_Mutation p.S455C 0.13 deleterious(0) probably_damaging(0.981) TCGA-GU-A764-01 20 44472959 44472959 G A ACOT8 Nonsense_Mutation p.Q197* 0.12 TCGA-GU-A764-01 20 45811970 45811970 G C EYA2 Missense_Mutation p.Q489H 0.06 tolerated(0.06) possibly_damaging(0.773) TCGA-GU-A764-01 20 61512478 61512478 C G DIDO1 Missense_Mutation p.E1610D 0.15 benign(0.197) TCGA-GU-A764-01 21 28338462 28338462 G C ADAMTS5 Silent p.G83G 0.05 TCGA-GU-A764-01 21 33073481 33073481 G A SCAF4 Nonsense_Mutation p.Q202* 0.07 TCGA-GU-A764-01 21 39947589 39947589 G A ERG Silent p.I12I 0.16 TCGA-GU-A764-01 21 45194157 45194157 G A CSTB Missense_Mutation p.H75Y 0.15 tolerated(0.21) probably_damaging(0.995) TCGA-GU-A764-01 22 23214093 23214093 C T IGLV4-3 Missense_Mutation p.R84C 0.08 deleterious(0.02) benign(0.053) TCGA-GU-A764-01 22 26423017 26423017 G A MYO18B Silent p.P2359P 0.13 TCGA-GU-A764-01 22 32013036 32013036 C T SFI1 Missense_Mutation p.H1162Y 0.23 tolerated(0.38) possibly_damaging(0.792) TCGA-GU-A764-01 22 32794028 32794028 G T RTCB Missense_Mutation p.F238L 0.08 deleterious(0.03) benign(0.007) TCGA-GU-A764-01 2 136530022 136530022 G C UBXN4 Missense_Mutation p.K285N 0.09 deleterious(0.05) benign(0.018) TCGA-GU-A764-01 2 179226525 179226525 C T OSBPL6 Nonsense_Mutation p.R449* 0.09 TCGA-GU-A764-01 2 179425410 179425410 G A TTN Silent p.I28483I 0.10 TCGA-GU-A764-01 2 179453414 179453414 A G TTN Missense_Mutation p.V21013A 0.19 TCGA-GU-A764-01 2 196642693 196642693 G A DNAH7 Missense_Mutation p.A3632V 0.20 deleterious(0) probably_damaging(0.999) TCGA-GU-A764-01 2 202587812 202587812 G A ALS2 Missense_Mutation p.T1219I 0.11 deleterious(0) probably_damaging(0.998) TCGA-GU-A764-01 2 216810332 216810332 T C MREG Missense_Mutation p.T158A 0.07 tolerated(0.55) benign(0.002) TCGA-GU-A764-01 2 25982412 25982412 G T ASXL2 Nonsense_Mutation p.S293* 0.10 TCGA-GU-A764-01 2 54045150 54045150 G A ERLEC1 3'UTR 0.09 TCGA-GU-A764-01 2 62227985 62227985 G T COMMD1 Missense_Mutation p.M110I 0.06 tolerated(0.68) benign(0.003) TCGA-GU-A764-01 2 62228000 62228000 G T COMMD1 Missense_Mutation p.W115C 0.07 deleterious(0) probably_damaging(0.99) TCGA-GU-A764-01 3 120115701 120115701 C T FSTL1 3'UTR 0.09 TCGA-GU-A764-01 3 12653521 12653521 A G RAF1 Missense_Mutation p.M83T 0.09 tolerated(0.58) benign(0.007) TCGA-GU-A764-01 3 150877829 150877829 G C MED12L Missense_Mutation p.D350H 0.23 deleterious(0) probably_damaging(0.999) TCGA-GU-A764-01 3 151599168 151599168 G T SUCNR1 Silent p.V279V 0.08 TCGA-GU-A764-01 3 157815934 157815934 G A SHOX2 Missense_Mutation p.S317L 0.21 deleterious(0.02) unknown(0) TCGA-GU-A764-01 3 48573773 48573773 G T PFKFB4 Silent p.I252I 0.06 TCGA-GU-A764-01 4 118005454 118005454 C G TRAM1L1 Missense_Mutation p.E366Q 0.06 tolerated(0.37) probably_damaging(0.933) TCGA-GU-A764-01 4 138442252 138442252 G A PCDH18 Silent p.H1113H 0.05 TCGA-GU-A764-01 4 40121623 40121627 AGTTC - N4BP2 Frame_Shift_Del p.E631Dfs*2 0.10 TCGA-GU-A764-01 4 6302786 6302786 G A WFS1 Missense_Mutation p.A422T 0.14 deleterious(0.03) benign(0.061) TCGA-GU-A764-01 4 8417613 8417613 G C ACOX3 Missense_Mutation p.F86L 0.26 tolerated(0.22) benign(0.002) TCGA-GU-A764-01 5 112860856 112860856 G T YTHDC2 Missense_Mutation p.V153L 0.13 tolerated(0.52) benign(0.002) TCGA-GU-A764-01 5 141382774 141382774 G C GNPDA1 Missense_Mutation p.I216M 0.11 deleterious(0.01) possibly_damaging(0.66) TCGA-GU-A764-01 5 142779844 142779844 G T NR3C1 Missense_Mutation p.D187E 0.14 deleterious(0.03) benign(0.341) TCGA-GU-A764-01 5 43613176 43613176 T C NNT Silent p.Y106Y 0.11 TCGA-GU-A764-01 5 79034046 79034046 C T CMYA5 Missense_Mutation p.P3153L 0.09 benign(0.006) TCGA-GU-A764-01 5 80628378 80628378 G A ACOT12 Missense_Mutation p.H437Y 0.14 tolerated(0.47) benign(0.006) TCGA-GU-A764-01 5 94248604 94248604 C T MCTP1 Silent p.L476L 0.09 TCGA-GU-A764-01 6 119301414 119301414 C T FAM184A Silent p.T730T 0.08 TCGA-GU-A764-01 6 119324144 119324144 G A FAM184A Nonsense_Mutation p.Q670* 0.09 TCGA-GU-A764-01 6 159206349 159206349 G A EZR Silent p.I153I 0.14 TCGA-GU-A764-01 6 160888609 160888609 A T LPAL2 RNA 0.07 TCGA-GU-A764-01 6 17507501 17507501 G A CAP2 Silent p.S134S 0.06 TCGA-GU-A764-01 6 56458815 56458815 C T DST Silent p.K1501K 0.10 TCGA-GU-A764-01 7 102920438 102920438 C A DPY19L2P2 RNA 0.20 TCGA-GU-A764-01 7 107258786 107258786 G C BCAP29 Missense_Mutation p.K261N 0.15 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-GU-A764-01 7 127978845 127978845 T C RBM28 Missense_Mutation p.D128G 0.04 deleterious(0.01) benign(0.353) TCGA-GU-A764-01 7 1607260 1607260 G A PSMG3 3'UTR 0.17 TCGA-GU-A764-01 7 2290712 2290712 G C NUDT1 3'UTR 0.12 TCGA-GU-A764-01 7 74004182 74004182 G A GTF2IRD1 Missense_Mutation p.E807K 0.21 tolerated(0.08) benign(0) TCGA-GU-A764-01 7 77256719 77256719 C A PTPN12 Missense_Mutation p.Q575K 0.04 tolerated(0.2) benign(0.012) TCGA-GU-A764-01 7 94540569 94540569 G T PPP1R9A Nonsense_Mutation p.E382* 0.07 TCGA-GU-A764-01 7 96746997 96746997 C G ACN9 5'UTR 0.06 TCGA-GU-A764-01 8 139163525 139163525 G C FAM135B Missense_Mutation p.P1065A 0.12 tolerated(0.31) possibly_damaging(0.748) TCGA-GU-A764-01 8 145746642 145746642 C T LRRC14 Missense_Mutation p.A421V 0.17 deleterious(0.01) benign(0.255) TCGA-GU-A764-01 8 35624514 35624514 C A UNC5D Missense_Mutation p.S803Y 0.11 deleterious(0) possibly_damaging(0.907) TCGA-GU-A764-01 8 35624515 35624515 C A UNC5D Silent p.S803S 0.12 TCGA-GU-A764-01 8 49833833 49833833 C T SNAI2 5'UTR 0.07 TCGA-GU-A764-01 8 86021873 86021873 C T LRRCC1 Missense_Mutation p.L50F 0.09 deleterious(0) probably_damaging(0.991) TCGA-GU-A764-01 9 123935999 123935999 G A CNTRL Missense_Mutation p.R2244Q 0.08 benign(0.271) TCGA-GU-A764-01 9 135203152 135203152 G A SETX Missense_Mutation p.P1278L 0.06 deleterious(0) probably_damaging(1) TCGA-GU-A764-01 9 8499661 8499661 G T PTPRD Missense_Mutation p.L770M 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-GU-A764-01 9 99699434 99699434 C T NUTM2G Silent p.H357H 0.14 TCGA-GU-A764-01 X 118694308 118694310 CCG - CXorf56 In_Frame_Del p.R55del 0.24 TCGA-GU-A764-01 X 123637419 123637419 G A TENM1 Missense_Mutation p.P1146S 0.12 deleterious(0.01) benign(0.028) TCGA-GU-A764-01 X 26212173 26212173 T A MAGEB6 Silent p.T70T 0.15 TCGA-GU-A764-01 X 32503197 32503197 G T DMD Nonsense_Mutation p.S881* 0.07 TCGA-GU-A764-01 X 64734803 64734803 C T LAS1L Missense_Mutation p.E660K 0.31 deleterious(0.04) benign(0.127) TCGA-GU-A764-01 X 79951411 79951411 C T BRWD3 Silent p.Q1049Q 0.16 TCGA-GU-A764-01 X 79962978 79962978 C T BRWD3 Missense_Mutation p.D834N 0.19 deleterious(0.02) benign(0.25) TCGA-GU-A766-01 10 102676711 102676711 G A FAM178A Missense_Mutation p.R190Q 0.38 tolerated(0.39) benign(0.01) TCGA-GU-A766-01 10 103898903 103898903 C G PPRC1 Missense_Mutation p.S213C 0.09 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-GU-A766-01 10 119303135 119303135 C T EMX2 Silent p.F119F 0.08 TCGA-GU-A766-01 10 125769698 125769698 G A CHST15 Silent p.L551L 0.09 TCGA-GU-A766-01 10 127426975 127426975 G A EDRF1 Missense_Mutation p.E648K 0.21 tolerated(0.4) benign(0.004) TCGA-GU-A766-01 10 13699486 13699486 G A FRMD4A Silent p.L701L 0.24 TCGA-GU-A766-01 10 15821032 15821032 C G FAM188A Missense_Mutation p.E433Q 0.14 deleterious(0) probably_damaging(0.989) TCGA-GU-A766-01 10 30306741 30306741 G C KIAA1462 3'UTR 0.21 TCGA-GU-A766-01 10 5046087 5046087 G C AKR1C2 5'UTR 0.28 TCGA-GU-A766-01 10 73548775 73548775 G C CDH23 Missense_Mutation p.E1972Q 0.20 tolerated(0.11) benign(0.135) TCGA-GU-A766-01 10 79570892 79570892 C T DLG5 Missense_Mutation p.E1475K 0.12 deleterious(0.05) possibly_damaging(0.876) TCGA-GU-A766-01 10 90983577 90983577 C G LIPA Missense_Mutation p.G229A 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-GU-A766-01 10 96306226 96306226 C G HELLS Missense_Mutation p.L42V 0.23 tolerated(0.25) benign(0.017) TCGA-GU-A766-01 11 102076777 102076777 G A YAP1 Missense_Mutation p.R319Q 0.11 deleterious(0.02) possibly_damaging(0.701) TCGA-GU-A766-01 11 116707812 116707812 C T APOA1 Silent p.V35V 0.12 TCGA-GU-A766-01 11 118339535 118339535 C T KMT2A Nonsense_Mutation p.R160* 0.13 TCGA-GU-A766-01 11 118656795 118656795 G C DDX6 Missense_Mutation p.Q56E 0.17 tolerated_low_confidence(0.63) benign(0.004) TCGA-GU-A766-01 11 32608636 32608636 G A EIF3M Missense_Mutation p.D41N 0.20 tolerated(0.14) benign(0.39) TCGA-GU-A766-01 11 32956369 32956369 G A QSER1 Missense_Mutation p.E1060K 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-GU-A766-01 11 43876875 43876875 G A HSD17B12 3'UTR 0.17 TCGA-GU-A766-01 11 4703011 4703011 C G OR51E2 Missense_Mutation p.D311H 0.22 tolerated(0.49) benign(0.153) TCGA-GU-A766-01 11 5345000 5345000 G A OR51B2 Silent p.F176F 0.21 TCGA-GU-A766-01 11 56086228 56086228 A G OR8K3 Missense_Mutation p.Y149C 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.793) TCGA-GU-A766-01 11 59611349 59611349 C T GIF Intron 0.37 TCGA-GU-A766-01 11 60075732 60075732 G C MS4A4A 3'UTR 0.12 TCGA-GU-A766-01 11 60230520 60230520 C T MS4A1 Missense_Mutation p.L69F 0.24 tolerated(0.08) probably_damaging(0.983) TCGA-GU-A766-01 11 62156681 62156681 G A ASRGL1 Missense_Mutation p.V190I 0.21 tolerated(0.38) benign(0.005) TCGA-GU-A766-01 11 72551973 72551973 G A FCHSD2 Silent p.F696F 0.25 TCGA-GU-A766-01 11 77413253 77413253 C T RSF1 Missense_Mutation p.E341K 0.23 tolerated(0.23) benign(0.341) TCGA-GU-A766-01 11 77885384 77885384 C A KCTD21 Missense_Mutation p.D73Y 0.26 tolerated(0.05) probably_damaging(0.998) TCGA-GU-A766-01 12 121784699 121784699 C T ANAPC5 Missense_Mutation p.G133S 0.14 deleterious(0) probably_damaging(1) TCGA-GU-A766-01 12 122845721 122845721 G A CLIP1 Nonsense_Mutation p.Q264* 0.17 TCGA-GU-A766-01 12 126137164 126137164 C G TMEM132B Missense_Mutation p.Q693E 0.20 tolerated(0.14) benign(0.03) TCGA-GU-A766-01 12 130847598 130847598 G A PIWIL1 Missense_Mutation p.D702N 0.23 deleterious(0.05) probably_damaging(0.99) TCGA-GU-A766-01 12 31246218 31246218 G A DDX11 Silent p.Q443Q 0.20 TCGA-GU-A766-01 12 48111320 48111320 C T ENDOU Silent p.E121E 0.17 TCGA-GU-A766-01 12 48723164 48723164 C T H1FNT Silent p.G30G 0.16 TCGA-GU-A766-01 12 49948155 49948155 C T KCNH3 Missense_Mutation p.R652W 0.20 deleterious(0.03) possibly_damaging(0.892) TCGA-GU-A766-01 12 527786 527786 G A CCDC77 Missense_Mutation p.D133N 0.15 deleterious(0) probably_damaging(1) TCGA-GU-A766-01 12 52797631 52797631 C G KRT82 Missense_Mutation p.Q158H 0.21 tolerated(0.09) benign(0.026) TCGA-GU-A766-01 12 53097197 53097197 G C KRT77 Missense_Mutation p.Q8E 0.13 tolerated(0.69) unknown(0) TCGA-GU-A766-01 12 53609099 53609099 G A RARG Silent p.F151F 0.27 TCGA-GU-A766-01 12 58000773 58000773 G A DTX3 Missense_Mutation p.E43K 0.13 tolerated(0.57) possibly_damaging(0.636) TCGA-GU-A766-01 12 62147449 62147449 C T FAM19A2 Missense_Mutation p.R113Q 0.11 tolerated(0.46) benign(0.004) TCGA-GU-A766-01 12 62784646 62784646 G A USP15 Missense_Mutation p.R616Q 0.21 deleterious(0) probably_damaging(0.986) TCGA-GU-A766-01 13 114149903 114149903 G A TMCO3 Missense_Mutation p.V3M 0.22 deleterious_low_confidence(0.02) benign(0.047) TCGA-GU-A766-01 13 26154062 26154062 G C ATP8A2 Missense_Mutation p.E662Q 0.21 tolerated(0.11) possibly_damaging(0.848) TCGA-GU-A766-01 13 31725297 31725297 C G HSPH1 Missense_Mutation p.G232A 0.15 deleterious(0) probably_damaging(1) TCGA-GU-A766-01 13 40298699 40298700 - T COG6 Splice_Site p.X582_splice 0.21 TCGA-GU-A766-01 13 51915321 51915321 G C SERPINE3 Missense_Mutation p.E32Q 0.16 tolerated(0.07) possibly_damaging(0.513) TCGA-GU-A766-01 13 70456528 70456528 C T KLHL1 Missense_Mutation p.E372K 0.24 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 14 22600798 22600798 C T TRAV8-7 Missense_Mutation p.P48L 0.24 tolerated(0.15) benign(0.027) TCGA-GU-A766-01 14 24724456 24724456 G A TGM1 Missense_Mutation p.S550L 0.16 deleterious(0) probably_damaging(0.972) TCGA-GU-A766-01 14 50246473 50246473 G C KLHDC2 Missense_Mutation p.R241T 0.33 deleterious(0.02) probably_damaging(0.927) TCGA-GU-A766-01 14 51190225 51190225 G A NIN 3'Flank 0.45 TCGA-GU-A766-01 14 75269286 75269286 G A YLPM1 Missense_Mutation p.M1476I 0.38 benign(0.083) TCGA-GU-A766-01 14 86088025 86088025 C G FLRT2 Nonsense_Mutation p.S56* 0.28 TCGA-GU-A766-01 14 91701405 91701405 G C GPR68 5'UTR 0.30 TCGA-GU-A766-01 15 29561448 29561448 G A NDNL2 Silent p.L154L 0.09 TCGA-GU-A766-01 15 34445220 34445220 T C KATNBL1 Missense_Mutation p.Y70C 0.08 tolerated(0.15) benign(0.001) TCGA-GU-A766-01 15 41037303 41037303 G A RMDN3 Silent p.L227L 0.13 TCGA-GU-A766-01 15 42032370 42032370 G C MGA Silent p.L1518L 0.32 TCGA-GU-A766-01 15 44120407 44120407 C G WDR76 Missense_Mutation p.S102C 0.10 tolerated(0.06) possibly_damaging(0.885) TCGA-GU-A766-01 15 49924441 49924441 A C DTWD1 Missense_Mutation p.E117A 0.07 deleterious(0.02) benign(0.202) TCGA-GU-A766-01 15 52537586 52537586 C G MYO5C Missense_Mutation p.E715Q 0.15 tolerated(1) benign(0.014) TCGA-GU-A766-01 15 59144162 59144162 C T FAM63B Nonsense_Mutation p.Q579* 0.11 TCGA-GU-A766-01 15 64385903 64385903 G A FAM96A Missense_Mutation p.S22F 0.11 tolerated(0.14) benign(0.002) TCGA-GU-A766-01 15 65744408 65744408 C G DPP8 Missense_Mutation p.W784C 0.10 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 16 20999130 20999130 C G DNAH3 Missense_Mutation p.R2256T 0.06 deleterious(0.01) benign(0.016) TCGA-GU-A766-01 16 23364134 23364134 C G SCNN1B Missense_Mutation p.I108M 0.21 tolerated(0.12) benign(0.027) TCGA-GU-A766-01 16 23364263 23364263 C T SCNN1B Silent p.V151V 0.17 TCGA-GU-A766-01 16 2806578 2806578 C G SRRM2 Silent p.L71L 0.16 TCGA-GU-A766-01 16 30095063 30095063 G A PPP4C Missense_Mutation p.D189N 0.19 deleterious(0.02) possibly_damaging(0.9) TCGA-GU-A766-01 16 31418942 31418942 G T ITGAD Missense_Mutation p.V271F 0.25 deleterious(0) probably_damaging(0.957) TCGA-GU-A766-01 16 4484461 4484461 G C DNAJA3 Missense_Mutation p.Q96H 0.28 deleterious(0) probably_damaging(0.971) TCGA-GU-A766-01 16 68877531 68877531 G A TANGO6 Missense_Mutation p.R4Q 0.25 tolerated_low_confidence(0.6) benign(0.019) TCGA-GU-A766-01 16 71668455 71668455 C A MARVELD3 Intron 0.14 TCGA-GU-A766-01 16 74452041 74452041 G A CLEC18B Silent p.V124V 0.24 TCGA-GU-A766-01 16 74921614 74921614 C T WDR59 Missense_Mutation p.D796N 0.12 deleterious(0.03) probably_damaging(0.917) TCGA-GU-A766-01 17 10532938 10532938 C A MYH3 Missense_Mutation p.K1924N 0.42 deleterious(0) probably_damaging(0.995) TCGA-GU-A766-01 17 16664976 16664976 G C CCDC144A Missense_Mutation p.E1204Q 0.20 deleterious(0.02) benign(0.375) TCGA-GU-A766-01 17 18023369 18023369 C T MYO15A Missense_Mutation p.P419S 0.26 benign(0.001) TCGA-GU-A766-01 17 18039129 18039129 C G MYO15A Missense_Mutation p.F1529L 0.19 unknown(0) TCGA-GU-A766-01 17 37866063 37866063 C T ERBB2 Intron 0.34 TCGA-GU-A766-01 17 37868208 37868208 C A ERBB2 Missense_Mutation p.S310Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-GU-A766-01 17 40070025 40070025 G C ACLY Silent p.V34V 0.06 TCGA-GU-A766-01 17 43182233 43182233 T - NMT1 Frame_Shift_Del p.F447Lfs*23 0.13 TCGA-GU-A766-01 17 43246705 43246705 G C HEXIM2 Missense_Mutation p.E130D 0.17 deleterious(0) benign(0.261) TCGA-GU-A766-01 17 60503793 60503793 G C METTL2A Missense_Mutation p.L112F 0.12 tolerated(0.07) benign(0.005) TCGA-GU-A766-01 17 60650687 60650687 G C TLK2 Missense_Mutation p.Q360H 0.23 tolerated(0.11) benign(0.028) TCGA-GU-A766-01 17 67119420 67119420 C G ABCA6 Missense_Mutation p.E466Q 0.08 deleterious(0) possibly_damaging(0.82) TCGA-GU-A766-01 17 67144894 67144894 G A ABCA10 3'UTR 0.15 TCGA-GU-A766-01 17 73647280 73647280 G A RECQL5 Silent p.F405F 0.35 TCGA-GU-A766-01 17 73917570 73917570 C G FBF1 Missense_Mutation p.G518A 0.13 tolerated(0.13) benign(0.011) TCGA-GU-A766-01 17 7578392 7578392 C A TP53 Nonsense_Mutation p.E180* 0.27 TCGA-GU-A766-01 17 78320894 78320894 C G RNF213 Nonsense_Mutation p.S2920* 0.36 TCGA-GU-A766-01 18 57103273 57103273 G C CCBE1 Missense_Mutation p.S363C 0.30 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-GU-A766-01 18 63530185 63530185 G A CDH7 Intron 0.33 TCGA-GU-A766-01 18 8076560 8076560 G A PTPRM Missense_Mutation p.E517K 0.16 tolerated(0.06) possibly_damaging(0.757) TCGA-GU-A766-01 19 12243277 12243277 G A ZNF20 3'UTR 0.42 TCGA-GU-A766-01 19 13007762 13007762 C T GCDH Silent p.I297I 0.20 TCGA-GU-A766-01 19 20828231 20828231 C T ZNF626 Intron 0.30 TCGA-GU-A766-01 19 35435274 35435274 C G ZNF30 Missense_Mutation p.H469Q 0.15 tolerated(0.35) benign(0.033) TCGA-GU-A766-01 19 38703011 38703011 G A DPF1 Intron 0.23 TCGA-GU-A766-01 19 42946982 42946982 C T CXCL17 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-GU-A766-01 19 43406420 43406420 C T PSG6 3'Flank 0.21 TCGA-GU-A766-01 19 48807271 48807271 G A CCDC114 Silent p.L227L 0.17 TCGA-GU-A766-01 19 49299592 49299592 G A BCAT2 Intron 0.20 TCGA-GU-A766-01 19 49793532 49793532 G A SLC6A16 Missense_Mutation p.P687S 0.12 tolerated(0.18) benign(0.046) TCGA-GU-A766-01 19 50333414 50333414 C G MED25 Nonsense_Mutation p.S253* 0.16 TCGA-GU-A766-01 19 53208071 53208071 G A ZNF611 3'UTR 0.20 TCGA-GU-A766-01 19 613319 613319 C T HCN2 Silent p.F552F 0.19 TCGA-GU-A766-01 19 6380608 6380608 G A GTF2F1 Missense_Mutation p.S442L 0.19 deleterious(0) probably_damaging(0.994) TCGA-GU-A766-01 19 6389523 6389523 G A GTF2F1 Silent p.I86I 0.18 TCGA-GU-A766-01 1 10207131 10207131 G A UBE4B Silent p.L858L 0.30 TCGA-GU-A766-01 1 1342378 1342378 G C MRPL20 Missense_Mutation p.R37G 0.31 tolerated(0.26) probably_damaging(0.915) TCGA-GU-A766-01 1 145585767 145585767 C G PIAS3 3'UTR 0.31 TCGA-GU-A766-01 1 156941516 156941516 C G ARHGEF11 Missense_Mutation p.K225N 0.28 deleterious(0) probably_damaging(0.962) TCGA-GU-A766-01 1 16534271 16534271 C T ARHGEF19 Silent p.G232G 0.19 TCGA-GU-A766-01 1 18023482 18023482 C T ARHGEF10L Silent p.D1149D 0.40 TCGA-GU-A766-01 1 18152290 18152290 C G ACTL8 Missense_Mutation p.S126W 0.39 deleterious(0) probably_damaging(0.98) TCGA-GU-A766-01 1 181759595 181759595 G A CACNA1E Missense_Mutation p.G1934E 0.09 tolerated(0.3) benign(0.029) TCGA-GU-A766-01 1 204955124 204955124 C T NFASC Intron 0.16 TCGA-GU-A766-01 1 26873469 26873469 G C RPS6KA1 Missense_Mutation p.G83R 0.33 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 1 27057826 27057826 C T ARID1A Nonsense_Mutation p.Q512* 0.29 TCGA-GU-A766-01 1 27101296 27101296 G A ARID1A Silent p.V1526V 0.30 TCGA-GU-A766-01 1 43393372 43393372 G C SLC2A1 Silent p.L394L 0.28 TCGA-GU-A766-01 1 74670942 74670942 A G FPGT Missense_Mutation p.Q404R 0.15 tolerated(0.08) benign(0.222) TCGA-GU-A766-01 1 76259853 76259853 C T RABGGTB Missense_Mutation p.R264C 0.22 tolerated(0.05) benign(0.002) TCGA-GU-A766-01 1 76259861 76259861 C T RABGGTB Silent p.F266F 0.22 TCGA-GU-A766-01 1 89414909 89414909 C G CCBL2 Missense_Mutation p.E336Q 0.38 tolerated(0.06) benign(0.083) TCGA-GU-A766-01 20 14665596 14665596 C T MACROD2 Missense_Mutation p.P137S 0.44 deleterious(0.02) possibly_damaging(0.687) TCGA-GU-A766-01 20 17970779 17970779 C A MGME1 3'UTR 0.60 TCGA-GU-A766-01 20 45354215 45354215 C T SLC2A10 Silent p.L180L 0.47 TCGA-GU-A766-01 20 47615021 47615021 G C ARFGEF2 Silent p.V1137V 0.45 TCGA-GU-A766-01 20 50092156 50092156 G A NFATC2 Silent p.I458I 0.42 TCGA-GU-A766-01 21 35091116 35091116 G T ITSN1 5'UTR 0.21 TCGA-GU-A766-01 21 45219498 45219498 G A RRP1 Missense_Mutation p.D287N 0.19 tolerated(0.07) benign(0.015) TCGA-GU-A766-01 21 47539014 47539014 G A COL6A2 Missense_Mutation p.R417H 0.35 tolerated(0.08) benign(0.41) TCGA-GU-A766-01 22 21174067 21174067 G T PI4KA Silent p.L217L 0.24 TCGA-GU-A766-01 22 28146949 28146949 G C MN1 Missense_Mutation p.S1306C 0.29 probably_damaging(0.997) TCGA-GU-A766-01 22 31534263 31534263 C T PLA2G3 Missense_Mutation p.G261R 0.18 tolerated(0.13) benign(0.198) TCGA-GU-A766-01 22 31536024 31536024 C G PLA2G3 Missense_Mutation p.R106T 0.39 tolerated(0.16) benign(0.147) TCGA-GU-A766-01 22 41223120 41223120 C G ST13 Missense_Mutation p.E321Q 0.29 deleterious(0.03) benign(0.419) TCGA-GU-A766-01 22 50303672 50303672 G A ALG12 Silent p.F178F 0.30 TCGA-GU-A766-01 22 50956471 50956471 C T NCAPH2 Missense_Mutation p.P164S 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-GU-A766-01 2 100176889 100176889 C T AFF3 Missense_Mutation p.M1068I 0.19 deleterious(0.01) benign(0.055) TCGA-GU-A766-01 2 132257818 132257818 C T AC093838.4 RNA 0.20 TCGA-GU-A766-01 2 135888197 135888197 C G RAB3GAP1 Nonsense_Mutation p.S381* 0.24 TCGA-GU-A766-01 2 160139395 160139395 G C WDSUB1 Missense_Mutation p.F62L 0.32 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 2 160798378 160798378 G A PLA2R1 Missense_Mutation p.R1435W 0.13 deleterious(0.02) possibly_damaging(0.724) TCGA-GU-A766-01 2 166848778 166848778 C T SCN1A Silent p.A1669A 0.24 TCGA-GU-A766-01 2 179424485 179424485 C G TTN Missense_Mutation p.D28792H 0.11 TCGA-GU-A766-01 2 198436896 198436896 C T RFTN2 Missense_Mutation p.E448K 0.14 tolerated(0.38) benign(0.004) TCGA-GU-A766-01 2 201437743 201437743 G A SGOL2 Missense_Mutation p.D892N 0.18 tolerated(0.28) benign(0.066) TCGA-GU-A766-01 2 202259985 202259985 G C TRAK2 Intron 0.12 TCGA-GU-A766-01 2 204066416 204066416 C G NBEAL1 Missense_Mutation p.I2434M 0.10 deleterious(0.02) benign(0.133) TCGA-GU-A766-01 2 234526713 234526713 T G UGT1A8 Missense_Mutation p.F120L 0.06 tolerated(0.82) benign(0.001) TCGA-GU-A766-01 2 242149760 242149760 C A ANO7 Silent p.I524I 0.26 TCGA-GU-A766-01 2 242644111 242644111 G T ING5 Silent p.L27L 0.18 TCGA-GU-A766-01 2 26698278 26698278 C G OTOF Silent p.L1025L 0.14 TCGA-GU-A766-01 2 27261629 27261629 G A TMEM214 Silent p.L451L 0.30 TCGA-GU-A766-01 2 27425742 27425742 C A SLC5A6 Missense_Mutation p.G405V 0.17 tolerated(0.52) benign(0.014) TCGA-GU-A766-01 2 27880307 27880307 C T SUPT7L Missense_Mutation p.E217K 0.20 deleterious(0.01) possibly_damaging(0.73) TCGA-GU-A766-01 2 39250312 39250312 G A SOS1 Silent p.I419I 0.13 TCGA-GU-A766-01 2 54133982 54133982 G A PSME4 Silent p.I936I 0.14 TCGA-GU-A766-01 2 74074845 74074845 C T STAMBP Missense_Mutation p.S236F 0.16 deleterious(0) probably_damaging(0.994) TCGA-GU-A766-01 2 74077584 74077584 G C STAMBP Missense_Mutation p.E317Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 2 74399722 74399722 C A MOB1A Missense_Mutation p.A58S 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-GU-A766-01 2 86297203 86297203 C T POLR1A Missense_Mutation p.E602K 0.12 deleterious(0) probably_damaging(1) TCGA-GU-A766-01 3 111962879 111962879 G A SLC9C1 Silent p.V414V 0.17 TCGA-GU-A766-01 3 122215400 122215400 C T KPNA1 Missense_Mutation p.G5R 0.17 tolerated(0.06) probably_damaging(0.939) TCGA-GU-A766-01 3 142261518 142261518 C T ATR Missense_Mutation p.D1147N 0.13 tolerated(0.06) possibly_damaging(0.597) TCGA-GU-A766-01 3 14746055 14746055 C G C3orf20 Missense_Mutation p.Q364E 0.12 tolerated(0.13) possibly_damaging(0.716) TCGA-GU-A766-01 3 151474906 151474906 G A AADACL2 Missense_Mutation p.D244N 0.19 tolerated(0.24) benign(0.071) TCGA-GU-A766-01 3 152058210 152058210 C A TMEM14E 3'UTR 0.25 TCGA-GU-A766-01 3 16312433 16312433 C T OXNAD1 Intron 0.17 TCGA-GU-A766-01 3 164741437 164741437 C G SI Missense_Mutation p.R1007T 0.13 tolerated(0.25) benign(0.027) TCGA-GU-A766-01 3 169846696 169846696 G T PHC3 Missense_Mutation p.P522T 0.16 deleterious(0.03) possibly_damaging(0.544) TCGA-GU-A766-01 3 25835623 25835623 G C OXSM Missense_Mutation p.E340Q 0.16 tolerated(0.15) benign(0.018) TCGA-GU-A766-01 3 25835901 25835901 G T OXSM Missense_Mutation p.W432C 0.16 tolerated(0.18) probably_damaging(0.994) TCGA-GU-A766-01 3 25835910 25835910 G C OXSM Missense_Mutation p.E435D 0.18 tolerated(0.85) benign(0) TCGA-GU-A766-01 3 30842412 30842412 C T GADL1 Missense_Mutation p.E407K 0.16 tolerated(0.64) benign(0.034) TCGA-GU-A766-01 3 42264837 42264837 G A TRAK1 Missense_Mutation p.E824K 0.09 tolerated(0.65) benign(0.243) TCGA-GU-A766-01 3 42632386 42632386 C T SS18L2 5'UTR 0.08 TCGA-GU-A766-01 3 47378027 47378027 G A KLHL18 Missense_Mutation p.D301N 0.23 tolerated(0.08) probably_damaging(0.925) TCGA-GU-A766-01 3 57994444 57994444 C T FLNB Silent p.I51I 0.16 TCGA-GU-A766-01 3 58178615 58178615 C T DNASE1L3 Intron 0.33 TCGA-GU-A766-01 3 97668765 97668765 G C MINA Nonsense_Mutation p.S328* 0.12 TCGA-GU-A766-01 4 119718845 119718845 G A SEC24D Missense_Mutation p.S345L 0.27 deleterious(0.04) benign(0.035) TCGA-GU-A766-01 4 25848952 25848952 G A SEL1L3 Missense_Mutation p.R233W 0.33 tolerated(0.1) benign(0.001) TCGA-GU-A766-01 5 122893236 122893236 C G CSNK1G3 Missense_Mutation p.F89L 0.42 tolerated(0.12) benign(0.09) TCGA-GU-A766-01 5 127654688 127654688 C G FBN2 Missense_Mutation p.D1493H 0.21 deleterious(0) probably_damaging(0.988) TCGA-GU-A766-01 5 1403077 1403077 G A SLC6A3 Missense_Mutation p.A576V 0.07 tolerated(0.09) benign(0.187) TCGA-GU-A766-01 5 140563664 140563664 C T PCDHB16 Silent p.N510N 0.13 TCGA-GU-A766-01 5 153182047 153182047 G A GRIA1 Missense_Mutation p.M849I 0.37 deleterious(0.03) probably_damaging(0.968) TCGA-GU-A766-01 5 179134191 179134191 G A CANX Missense_Mutation p.G102R 0.14 deleterious(0) probably_damaging(1) TCGA-GU-A766-01 5 43291259 43291259 C T HMGCS1 Missense_Mutation p.A513T 0.19 tolerated_low_confidence(0.13) benign(0.001) TCGA-GU-A766-01 5 43291265 43291265 C T HMGCS1 Missense_Mutation p.E511K 0.19 tolerated_low_confidence(0.19) benign(0.013) TCGA-GU-A766-01 5 57753379 57753379 G C PLK2 Missense_Mutation p.P249A 0.29 deleterious(0) probably_damaging(0.997) TCGA-GU-A766-01 5 75970356 75970356 G C IQGAP2 Missense_Mutation p.D1117H 0.38 deleterious(0) probably_damaging(0.99) TCGA-GU-A766-01 5 86686731 86686731 C T RASA1 3'UTR 0.34 TCGA-GU-A766-01 6 111694670 111694670 C G REV3L Missense_Mutation p.E1630Q 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-GU-A766-01 6 116575051 116575051 C T TSPYL4 Missense_Mutation p.E41K 0.12 tolerated(0.15) benign(0.005) TCGA-GU-A766-01 6 144086865 144086865 G A PHACTR2 Missense_Mutation p.E388K 0.23 deleterious_low_confidence(0.01) benign(0.325) TCGA-GU-A766-01 6 159029430 159029430 C A TMEM181 Missense_Mutation p.Q384K 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-GU-A766-01 6 168352864 168352864 G A MLLT4 Silent p.A1603A 0.21 TCGA-GU-A766-01 6 24205302 24205302 C T DCDC2 Silent p.E317E 0.14 TCGA-GU-A766-01 6 26056218 26056218 G A HIST1H1C Missense_Mutation p.P147S 0.17 tolerated(0.11) unknown(0) TCGA-GU-A766-01 6 32942379 32942379 C - BRD2 Frame_Shift_Del p.P58Lfs*28 0.21 TCGA-GU-A766-01 6 33281050 33281050 A C TAPBP Missense_Mutation p.L138R 0.33 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 6 37445393 37445393 G A CMTR1 Missense_Mutation p.E711K 0.15 deleterious(0.04) benign(0.169) TCGA-GU-A766-01 6 41065207 41065207 G C NFYA 3'UTR 0.09 TCGA-GU-A766-01 6 43184229 43184229 C G CUL9 Missense_Mutation p.H2090Q 0.19 deleterious(0) probably_damaging(0.99) TCGA-GU-A766-01 6 43491384 43491384 C G XPO5 3'UTR 0.18 TCGA-GU-A766-01 6 44929520 44929520 C T SUPT3H Missense_Mutation p.E195K 0.22 tolerated(0.18) probably_damaging(0.915) TCGA-GU-A766-01 6 7559514 7559514 C T DSP Nonsense_Mutation p.R160* 0.18 TCGA-GU-A766-01 6 7583560 7583560 C G DSP Missense_Mutation p.S2022C 0.22 probably_damaging(0.997) TCGA-GU-A766-01 6 87964497 87964497 G A ZNF292 Missense_Mutation p.E384K 0.14 deleterious(0) probably_damaging(0.99) TCGA-GU-A766-01 6 87971439 87971439 G C ZNF292 Missense_Mutation p.E2698Q 0.15 deleterious(0.01) probably_damaging(0.911) TCGA-GU-A766-01 7 107688500 107688500 G A LAMB4 Silent p.L1393L 0.21 TCGA-GU-A766-01 7 142575686 142575686 C G TRPV6 Missense_Mutation p.Q74H 0.22 deleterious(0.01) possibly_damaging(0.782) TCGA-GU-A766-01 7 27797661 27797661 T C TAX1BP1 Silent p.S58S 0.24 TCGA-GU-A766-01 7 36895167 36895167 C G ELMO1 Missense_Mutation p.D725H 0.17 deleterious(0) possibly_damaging(0.735) TCGA-GU-A766-01 7 47904867 47904867 C G PKD1L1 Missense_Mutation p.E1366Q 0.22 deleterious(0.03) probably_damaging(0.925) TCGA-GU-A766-01 7 56062621 56062621 G A GBAS Missense_Mutation p.E218K 0.43 deleterious(0) possibly_damaging(0.905) TCGA-GU-A766-01 7 6043387 6043387 G A PMS2 Missense_Mutation p.A96V 0.06 tolerated(0.1) benign(0.151) TCGA-GU-A766-01 7 6731373 6731373 C T ZNF12 Silent p.Q400Q 0.38 TCGA-GU-A766-01 7 83590623 83590623 T C SEMA3A 3'UTR 0.22 TCGA-GU-A766-01 7 99971727 99971727 C G PILRA Nonsense_Mutation p.S42* 0.13 TCGA-GU-A766-01 8 120638956 120638956 T C ENPP2 Silent p.L47L 0.36 TCGA-GU-A766-01 8 144696807 144696807 C T TSTA3 Missense_Mutation p.D151N 0.39 deleterious(0) probably_damaging(0.988) TCGA-GU-A766-01 8 144803417 144803417 G T MAPK15 Missense_Mutation p.G347V 0.33 deleterious(0.01) benign(0.013) TCGA-GU-A766-01 8 22053809 22053809 C T BMP1 Intron 0.42 TCGA-GU-A766-01 8 25745427 25745427 G A EBF2 Silent p.V271V 0.25 TCGA-GU-A766-01 8 55538471 55538471 C T RP1 Nonsense_Mutation p.R677* 0.28 TCGA-GU-A766-01 8 61761089 61761089 C T CHD7 Silent p.V1742V 0.38 TCGA-GU-A766-01 8 67813598 67813598 C G MCMDC2 Intron 0.20 TCGA-GU-A766-01 9 113547282 113547282 G A MUSK Nonsense_Mutation p.W524* 0.34 TCGA-GU-A766-01 9 114290002 114290002 G C ZNF483 Missense_Mutation p.R109S 0.45 deleterious(0) possibly_damaging(0.537) TCGA-GU-A766-01 9 131370143 131370143 G A SPTAN1 Missense_Mutation p.E1387K 0.24 deleterious(0) probably_damaging(0.999) TCGA-GU-A766-01 9 131374459 131374459 G A SPTAN1 Silent p.L1659L 0.34 TCGA-GU-A766-01 9 131378024 131378024 C T SPTAN1 Silent p.I1754I 0.46 TCGA-GU-A766-01 9 131381222 131381222 C A SPTAN1 Silent p.I1891I 0.33 TCGA-GU-A766-01 9 135798755 135798755 G T TSC1 Nonsense_Mutation p.S163* 0.37 TCGA-GU-A766-01 9 91930175 91930175 G C CKS2 Missense_Mutation p.Q50H 0.39 deleterious(0) possibly_damaging(0.657) TCGA-GU-A766-01 X 118250501 118250501 G C KIAA1210 Missense_Mutation p.S203C 0.33 deleterious(0.03) benign(0.176) TCGA-GU-A766-01 X 127185359 127185359 G T ACTRT1 Nonsense_Mutation p.S276* 0.46 TCGA-GU-A766-01 X 152031185 152031185 G A NSDHL Missense_Mutation p.D154N 0.53 tolerated(0.32) benign(0.117) TCGA-GU-A766-01 X 153691835 153691835 G T PLXNA3 Silent p.R473R 0.38 TCGA-GU-A766-01 X 16775342 16775342 G A SYAP1 Missense_Mutation p.D281N 0.37 deleterious(0.04) possibly_damaging(0.711) TCGA-GU-A766-01 X 49047990 49047990 G T SYP Silent p.A282A 0.54 TCGA-GU-A766-01 X 54159251 54159251 C G FAM120C Missense_Mutation p.E646Q 0.47 deleterious(0.01) probably_damaging(0.92) TCGA-GU-A766-01 X 70329170 70329170 C T IL2RG Missense_Mutation p.R222H 0.44 tolerated(0.36) possibly_damaging(0.624) TCGA-GU-A767-01 10 100195123 100195123 C A HPS1 Nonsense_Mutation p.E102* 0.13 TCGA-GU-A767-01 10 103298066 103298066 G C BTRC Missense_Mutation p.D532H 0.04 deleterious(0.02) probably_damaging(0.937) TCGA-GU-A767-01 10 104620256 104620256 G A C10orf32 Missense_Mutation p.S69N 0.07 tolerated(0.37) probably_damaging(0.991) TCGA-GU-A767-01 10 107022136 107022136 A T SORCS3 Missense_Mutation p.E1164V 0.10 deleterious(0) probably_damaging(0.91) TCGA-GU-A767-01 10 120830469 120830469 C G EIF3A Missense_Mutation p.E224Q 0.07 deleterious(0.02) unknown(0) TCGA-GU-A767-01 10 123596255 123596255 G C ATE1 Nonsense_Mutation p.S412* 0.11 TCGA-GU-A767-01 10 129864369 129864369 G T PTPRE Missense_Mutation p.G252C 0.12 deleterious(0.02) probably_damaging(1) TCGA-GU-A767-01 10 17891741 17891741 G T MRC1L1 Missense_Mutation p.D408Y 0.06 probably_damaging(0.911) TCGA-GU-A767-01 10 26508020 26508020 A T GAD2 Missense_Mutation p.Q112L 0.11 tolerated(0.65) possibly_damaging(0.838) TCGA-GU-A767-01 10 3154472 3154472 G A PFKP Missense_Mutation p.R383Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-GU-A767-01 10 32983903 32983903 G A C10ORF68 Missense_Mutation p.R121K 0.42 tolerated(0.91) benign(0.005) TCGA-GU-A767-01 10 34630595 34630595 C A PARD3 Missense_Mutation p.G793C 0.10 tolerated(0.05) benign(0.345) TCGA-GU-A767-01 10 38345582 38345582 G T ZNF33A 3'UTR 0.33 TCGA-GU-A767-01 10 52595879 52595879 C T A1CF Missense_Mutation p.E195K 0.07 tolerated(0.08) benign(0.216) TCGA-GU-A767-01 10 6146897 6146897 C T RBM17 Missense_Mutation p.P82S 0.08 tolerated(0.16) benign(0.001) TCGA-GU-A767-01 10 70513676 70513676 G C CCAR1 Missense_Mutation p.D396H 0.05 tolerated(0.36) possibly_damaging(0.829) TCGA-GU-A767-01 10 70968770 70968770 G A SUPV3L1 Silent p.K780K 0.11 TCGA-GU-A767-01 10 74885084 74885084 A T NUDT13 Intron 0.10 TCGA-GU-A767-01 10 79581363 79581363 T C DLG5 Missense_Mutation p.K960R 0.23 tolerated(0.13) possibly_damaging(0.87) TCGA-GU-A767-01 10 84745172 84745172 C A NRG3 Silent p.V634V 0.18 TCGA-GU-A767-01 10 90431629 90431629 C T LIPF Silent p.I202I 0.10 TCGA-GU-A767-01 10 90436003 90436003 G A LIPF Missense_Mutation p.G319E 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-GU-A767-01 11 100064363 100064363 G T CNTN5 Nonsense_Mutation p.E618* 0.19 TCGA-GU-A767-01 11 107832732 107832732 T A RAB39A Silent p.T96T 0.12 TCGA-GU-A767-01 11 121008324 121008324 G A TECTA Missense_Mutation p.A1046T 0.20 tolerated(0.09) benign(0.046) TCGA-GU-A767-01 11 123900829 123900829 A T OR10G8 Missense_Mutation p.Y167F 0.12 tolerated(0.22) benign(0.116) TCGA-GU-A767-01 11 124189580 124189580 G A OR8D2 Missense_Mutation p.H172Y 0.08 deleterious(0.04) possibly_damaging(0.782) TCGA-GU-A767-01 11 124956234 124956234 G C SLC37A2 Intron 0.07 TCGA-GU-A767-01 11 125482969 125482969 C G STT3A Missense_Mutation p.S484C 0.06 deleterious(0.01) probably_damaging(1) TCGA-GU-A767-01 11 129801092 129801092 C T PRDM10 Missense_Mutation p.G450E 0.39 tolerated(0.14) probably_damaging(1) TCGA-GU-A767-01 11 45949790 45949790 C T GYLTL1B Missense_Mutation p.A606V 0.13 tolerated(0.26) benign(0.014) TCGA-GU-A767-01 11 46783992 46783992 T A CKAP5 Intron 0.26 TCGA-GU-A767-01 11 5566055 5566055 G C OR52H1 Silent p.V233V 0.26 TCGA-GU-A767-01 11 55889908 55889908 C T OR8H3 Silent p.D20D 0.09 TCGA-GU-A767-01 11 55905127 55905127 A G OR8J3 Missense_Mutation p.L23P 0.04 deleterious(0) probably_damaging(0.966) TCGA-GU-A767-01 11 55944259 55944259 C A OR5J2 Missense_Mutation p.H56N 0.05 deleterious(0.01) benign(0.078) TCGA-GU-A767-01 11 57259332 57259332 G C SLC43A1 Missense_Mutation p.S292C 0.19 deleterious(0) probably_damaging(0.948) TCGA-GU-A767-01 11 58391915 58391915 G C CNTF Missense_Mutation p.D175H 0.07 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 11 59210764 59210775 CCTGGCCTGGAA - OR5A1 In_Frame_Del p.W44_A47del 0.07 TCGA-GU-A767-01 11 62293045 62293045 C - AHNAK Frame_Shift_Del p.K2950Sfs*7 0.08 TCGA-GU-A767-01 11 62532662 62532662 C G POLR2G Silent p.L97L 0.10 TCGA-GU-A767-01 11 64847002 64847002 G A CDCA5 Silent p.G167G 0.30 TCGA-GU-A767-01 11 64854235 64854235 C T ZFPL1 Missense_Mutation p.S151F 0.24 deleterious(0.04) possibly_damaging(0.506) TCGA-GU-A767-01 11 65156902 65156902 C G FRMD8 Silent p.L52L 0.38 TCGA-GU-A767-01 11 65361000 65361000 C T KCNK7 Missense_Mutation p.R222H 0.31 tolerated(0.37) benign(0.003) TCGA-GU-A767-01 11 66319034 66319034 C T ACTN3 3'UTR 0.39 TCGA-GU-A767-01 11 67168610 67168610 C T PPP1CA Missense_Mutation p.C50Y 0.13 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-GU-A767-01 11 67817159 67817159 G C TCIRG1 Silent p.L639L 0.25 TCGA-GU-A767-01 11 67926476 67926476 T A SUV420H1 Missense_Mutation p.K446M 0.27 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 11 71729552 71729552 C T NUMA1 Silent p.Q250Q 0.14 TCGA-GU-A767-01 12 100676839 100676839 G C SCYL2 Missense_Mutation p.E31Q 0.08 deleterious(0.03) possibly_damaging(0.78) TCGA-GU-A767-01 12 1025894 1025894 C A RAD52 Missense_Mutation p.M212I 0.09 tolerated(0.2) benign(0.003) TCGA-GU-A767-01 12 10854585 10854585 T C YBX3 Missense_Mutation p.N343D 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-GU-A767-01 12 112623239 112623239 G A HECTD4 Silent p.L3031L 0.32 TCGA-GU-A767-01 12 123087221 123087222 GC - KNTC1 Frame_Shift_Del p.A1587Pfs*3 0.15 TCGA-GU-A767-01 12 123489805 123489805 G A PITPNM2 Missense_Mutation p.R312W 0.14 tolerated(0.07) probably_damaging(0.997) TCGA-GU-A767-01 12 123800158 123800158 C G SBNO1 Silent p.L995L 0.08 TCGA-GU-A767-01 12 124422188 124422188 C T CCDC92 Missense_Mutation p.S138N 0.16 deleterious(0) possibly_damaging(0.779) TCGA-GU-A767-01 12 132635830 132635830 C G NOC4L Silent p.L330L 0.12 TCGA-GU-A767-01 12 18892116 18892116 G C CAPZA3 3'UTR 0.35 TCGA-GU-A767-01 12 4598963 4598963 C G C12orf4 3'UTR 0.12 TCGA-GU-A767-01 12 4598988 4598988 C T C12orf4 Silent p.L548L 0.11 TCGA-GU-A767-01 12 49418470 49418470 G A KMT2D Nonsense_Mutation p.Q5315* 0.23 TCGA-GU-A767-01 12 49424457 49424469 CTCTGCCCATTGA - KMT2D Frame_Shift_Del p.V4585Afs*3 0.33 TCGA-GU-A767-01 12 49580206 49580206 G T TUBA1A Missense_Mutation p.H88N 0.13 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-GU-A767-01 12 49943358 49943358 A T KCNH3 Nonsense_Mutation p.K535* 0.15 TCGA-GU-A767-01 12 50344581 50344581 G T AQP2 5'UTR 0.11 TCGA-GU-A767-01 12 50488336 50488336 T C SMARCD1 Missense_Mutation p.I417T 0.17 deleterious(0) probably_damaging(0.988) TCGA-GU-A767-01 12 50501359 50501359 G A GPD1 Missense_Mutation p.A208T 0.35 deleterious(0) probably_damaging(0.96) TCGA-GU-A767-01 12 53170642 53170642 C T KRT76 Missense_Mutation p.G145D 0.31 tolerated(0.21) unknown(0) TCGA-GU-A767-01 12 54805643 54805643 G T ITGA5 Nonsense_Mutation p.C108* 0.14 TCGA-GU-A767-01 12 55248897 55248897 C T MUCL1 Intron 0.14 TCGA-GU-A767-01 12 56330304 56330304 G C DGKA Missense_Mutation p.G6A 0.18 tolerated_low_confidence(0.77) benign(0.032) TCGA-GU-A767-01 12 58120985 58120985 G C AGAP2-AS1 Missense_Mutation p.L70F 0.27 possibly_damaging(0.765) TCGA-GU-A767-01 12 62965251 62965251 G C MON2 Missense_Mutation p.R1468T 0.07 tolerated(0.81) benign(0.003) TCGA-GU-A767-01 12 6426758 6426758 T G PLEKHG6 Missense_Mutation p.L305V 0.15 deleterious(0) probably_damaging(0.936) TCGA-GU-A767-01 12 66152430 66152430 C T RPSAP52 RNA 0.41 TCGA-GU-A767-01 12 69993777 69993777 G T CCT2 Missense_Mutation p.A524S 0.12 tolerated(0.07) benign(0.193) TCGA-GU-A767-01 12 7053317 7053317 G A C12orf57 Silent p.L11L 0.05 TCGA-GU-A767-01 12 72316897 72316897 G T TBC1D15 Missense_Mutation p.L663F 0.12 tolerated_low_confidence(0.15) benign(0.003) TCGA-GU-A767-01 12 9144893 9144893 G A KLRG1 Nonsense_Mutation p.W58* 0.27 TCGA-GU-A767-01 12 96180979 96180979 G A NTN4 Missense_Mutation p.S108F 0.41 deleterious(0) probably_damaging(0.991) TCGA-GU-A767-01 12 980486 980486 C G WNK1 Missense_Mutation p.S732C 0.06 tolerated(0.05) unknown(0) TCGA-GU-A767-01 13 100543592 100543592 G C CLYBL Silent p.G316G 0.16 TCGA-GU-A767-01 13 100617981 100617981 C A ZIC5 Missense_Mutation p.D548Y 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-GU-A767-01 13 103515094 103515094 C T BIVM-ERCC5 Missense_Mutation p.S958F 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.899) TCGA-GU-A767-01 13 24384058 24384058 C G MIPEP Silent p.L553L 0.17 TCGA-GU-A767-01 13 31495193 31495193 T G MEDAG Missense_Mutation p.I144R 0.08 deleterious(0) probably_damaging(0.991) TCGA-GU-A767-01 13 36776032 36776032 C T SOHLH2 Missense_Mutation p.A160T 0.06 deleterious(0.05) benign(0.103) TCGA-GU-A767-01 13 52952430 52952430 G T THSD1 Missense_Mutation p.L559M 0.08 tolerated(0.05) probably_damaging(0.927) TCGA-GU-A767-01 13 98666375 98666375 G C IPO5 Missense_Mutation p.Q762H 0.06 tolerated(0.12) possibly_damaging(0.785) TCGA-GU-A767-01 14 101453424 101453424 A G SNORD114-26 RNA 0.06 TCGA-GU-A767-01 14 101506572 101506572 G A MIR654 RNA 0.30 TCGA-GU-A767-01 14 103416210 103416210 C G CDC42BPB Missense_Mutation p.W1114S 0.10 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 14 106866566 106866566 C A IGHV3-38 Missense_Mutation p.G63V 0.07 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-GU-A767-01 14 20344575 20344575 T C OR4K2 Missense_Mutation p.I50T 0.18 tolerated(0.54) benign(0.002) TCGA-GU-A767-01 14 21623773 21623773 C T OR5AU1 Missense_Mutation p.A138T 0.24 tolerated(0.39) benign(0.058) TCGA-GU-A767-01 14 23447600 23447600 G A AJUBA Missense_Mutation p.A354V 0.05 deleterious(0) probably_damaging(0.918) TCGA-GU-A767-01 14 24040226 24040226 G C JPH4 Missense_Mutation p.L572V 0.06 tolerated(0.19) probably_damaging(0.931) TCGA-GU-A767-01 14 24901226 24901226 C T KHNYN Silent p.Y253Y 0.14 TCGA-GU-A767-01 14 33015563 33015563 G A AKAP6 Silent p.L568L 0.10 TCGA-GU-A767-01 14 45403742 45403742 G C KLHL28 Missense_Mutation p.Q307E 0.07 tolerated(0.31) benign(0.006) TCGA-GU-A767-01 14 73412591 73412591 G C DCAF4 Splice_Site p.X179_splice 0.08 TCGA-GU-A767-01 14 73460037 73460037 G A ZFYVE1 Silent p.L339L 0.18 TCGA-GU-A767-01 14 89878791 89878791 C T FOXN3 Silent p.K10K 0.09 TCGA-GU-A767-01 14 92471542 92471542 C A TRIP11 Missense_Mutation p.K926N 0.05 tolerated(0.16) possibly_damaging(0.725) TCGA-GU-A767-01 14 95942024 95942024 C T SYNE3 Nonsense_Mutation p.W45* 0.47 TCGA-GU-A767-01 15 20193340 20193340 C A IGHV3OR15-7 Missense_Mutation p.V11F 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.677) TCGA-GU-A767-01 15 22332496 22332496 C T RP11-69H14.6 RNA 0.06 TCGA-GU-A767-01 15 35045373 35045373 A C GJD2 Missense_Mutation p.L91R 0.13 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 15 41337172 41337172 T C INO80 Missense_Mutation p.N946S 0.07 tolerated(0.22) benign(0.02) TCGA-GU-A767-01 15 42298242 42298242 G A PLA2G4E Silent p.L157L 0.08 TCGA-GU-A767-01 15 59384757 59384757 G C RNF111 Missense_Mutation p.D930H 0.13 deleterious(0) possibly_damaging(0.693) TCGA-GU-A767-01 15 63882938 63882938 G C USP3 Silent p.L492L 0.35 TCGA-GU-A767-01 15 64448760 64448760 G A SNX22 3'UTR 0.16 TCGA-GU-A767-01 15 66180302 66180302 G A RAB11A 3'UTR 0.27 TCGA-GU-A767-01 15 69682009 69682009 C T PAQR5 Silent p.Y134Y 0.11 TCGA-GU-A767-01 15 72037489 72037489 G C THSD4 Missense_Mutation p.E651Q 0.05 tolerated(0.06) benign(0.043) TCGA-GU-A767-01 15 73007632 73007632 C A BBS4 Missense_Mutation p.A74E 0.11 deleterious(0) probably_damaging(0.99) TCGA-GU-A767-01 15 80454632 80454632 G - FAH Frame_Shift_Del p.V137Sfs*12 0.09 TCGA-GU-A767-01 15 82336599 82336599 C A MEX3B Silent p.V204V 0.28 TCGA-GU-A767-01 15 83926767 83926767 G T BNC1 Silent p.A804A 0.13 TCGA-GU-A767-01 15 90969473 90969473 A G IQGAP1 Missense_Mutation p.Y96C 0.06 deleterious(0) probably_damaging(0.997) TCGA-GU-A767-01 15 91328250 91328250 G T BLM Missense_Mutation p.G921V 0.19 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 15 91452614 91452614 C T MAN2A2 Silent p.V418V 0.08 TCGA-GU-A767-01 15 97327410 97327410 C A SPATA8 Silent p.A39A 0.07 TCGA-GU-A767-01 16 10867265 10867265 C T TVP23A Missense_Mutation p.E120K 0.09 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 16 2354026 2354026 C G ABCA3 Missense_Mutation p.E471Q 0.39 deleterious(0) possibly_damaging(0.78) TCGA-GU-A767-01 16 27356317 27356317 G T IL4R Missense_Mutation p.G113C 0.33 deleterious(0.03) probably_damaging(0.962) TCGA-GU-A767-01 16 30720959 30720959 G C SRCAP Missense_Mutation p.Q253H 0.11 unknown(0) TCGA-GU-A767-01 16 31131570 31131570 A C KAT8 Missense_Mutation p.H92P 0.10 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 16 3640508 3640508 C A SLX4 Missense_Mutation p.S1044I 0.12 deleterious(0) probably_damaging(0.968) TCGA-GU-A767-01 16 4873840 4873840 C T GLYR1 Nonsense_Mutation p.W202* 0.27 TCGA-GU-A767-01 16 55523710 55523710 G A MMP2 Missense_Mutation p.R385H 0.08 deleterious(0.03) possibly_damaging(0.901) TCGA-GU-A767-01 16 55855310 55855310 C A CES1 Missense_Mutation p.E221D 0.09 deleterious(0.01) possibly_damaging(0.486) TCGA-GU-A767-01 16 57608786 57608786 C T GPR114 Missense_Mutation p.T423M 0.13 deleterious(0.03) possibly_damaging(0.627) TCGA-GU-A767-01 16 58296315 58296315 C T CCDC113 Silent p.H218H 0.07 TCGA-GU-A767-01 16 58582447 58582447 C T CNOT1 Intron 0.38 TCGA-GU-A767-01 16 61851527 61851527 A C CDH8 Missense_Mutation p.V378G 0.11 deleterious(0) probably_damaging(0.998) TCGA-GU-A767-01 16 67428785 67428785 G T ZDHHC1 Silent p.P414P 0.62 TCGA-GU-A767-01 16 67913608 67913608 G C EDC4 Silent p.L584L 0.07 TCGA-GU-A767-01 16 68191963 68191963 G A NFATC3 Missense_Mutation p.M531I 0.07 deleterious(0.01) possibly_damaging(0.522) TCGA-GU-A767-01 16 68215389 68215389 C T NFATC3 Nonsense_Mutation p.Q643* 0.21 TCGA-GU-A767-01 16 68398694 68398694 G C SMPD3 Missense_Mutation p.D505E 0.25 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 16 69369196 69369196 T C COG8 Missense_Mutation p.Q214R 0.28 tolerated(0.06) probably_damaging(0.937) TCGA-GU-A767-01 16 711673 711673 G T WDR90 Missense_Mutation p.E1250D 0.08 tolerated(0.07) probably_damaging(0.956) TCGA-GU-A767-01 16 716521 716521 G A WDR90 Missense_Mutation p.V1603I 0.18 tolerated(0.47) benign(0.005) TCGA-GU-A767-01 16 75146235 75146235 C T LDHD 3'UTR 0.14 TCGA-GU-A767-01 16 75276448 75276448 C A BCAR1 Missense_Mutation p.A231S 0.13 tolerated(0.5) benign(0.008) TCGA-GU-A767-01 16 84256060 84256060 G A KCNG4 Silent p.S441S 0.06 TCGA-GU-A767-01 16 84485660 84485660 G A ATP2C2 Missense_Mutation p.M598I 0.30 deleterious(0.01) benign(0.213) TCGA-GU-A767-01 16 89764654 89764654 C A SPATA2L Silent p.L121L 0.10 TCGA-GU-A767-01 17 16455631 16455631 G A ZNF287 Nonsense_Mutation p.Q609* 0.10 TCGA-GU-A767-01 17 33984672 33984672 G A AP2B1 Silent p.Q617Q 0.06 TCGA-GU-A767-01 17 34072897 34072897 G T GAS2L2 Missense_Mutation p.A540D 0.13 tolerated(0.06) benign(0.021) TCGA-GU-A767-01 17 34091550 34091550 G A C17orf50 Silent p.R146R 0.18 TCGA-GU-A767-01 17 37865593 37865593 G C ERBB2 Missense_Mutation p.L154F 0.05 tolerated(0.65) benign(0.017) TCGA-GU-A767-01 17 37868208 37868208 C A ERBB2 Missense_Mutation p.S310Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-GU-A767-01 17 38233799 38233799 G T THRA Missense_Mutation p.V54F 0.11 tolerated(0.35) probably_damaging(0.999) TCGA-GU-A767-01 17 38953186 38953186 C T KRT28 Silent p.L320L 0.09 TCGA-GU-A767-01 17 39538468 39538468 C T KRT34 Missense_Mutation p.G53S 0.23 tolerated(0.85) benign(0) TCGA-GU-A767-01 17 42148507 42148507 C T G6PC3 Silent p.L58L 0.24 TCGA-GU-A767-01 17 45377873 45377873 G A ITGB3 Missense_Mutation p.R648Q 0.21 tolerated(0.35) benign(0.313) TCGA-GU-A767-01 17 45916238 45916238 A C SCRN2 Missense_Mutation p.S231A 0.05 tolerated(0.05) probably_damaging(0.919) TCGA-GU-A767-01 17 49713299 49713299 C T CA10 Missense_Mutation p.D236N 0.06 deleterious(0.01) benign(0.118) TCGA-GU-A767-01 17 53471609 53471609 C - MMD 3'UTR 0.15 TCGA-GU-A767-01 17 56621084 56621084 G C C17orf47 Missense_Mutation p.S155C 0.06 tolerated(0.07) possibly_damaging(0.476) TCGA-GU-A767-01 17 57350330 57350330 G C GDPD1 Intron 0.27 TCGA-GU-A767-01 17 59001824 59001824 T A BCAS3 Missense_Mutation p.H350Q 0.07 deleterious(0) possibly_damaging(0.692) TCGA-GU-A767-01 17 61601623 61601623 A T KCNH6 Missense_Mutation p.D67V 0.28 deleterious(0.01) possibly_damaging(0.828) TCGA-GU-A767-01 17 61628119 61628119 G T DCAF7 Silent p.R27R 0.15 TCGA-GU-A767-01 17 71199822 71199822 C T COG1 Missense_Mutation p.R758W 0.13 deleterious(0) probably_damaging(0.949) TCGA-GU-A767-01 17 72338023 72338023 T C KIF19 Silent p.V43V 0.08 TCGA-GU-A767-01 17 73922415 73922415 C T FBF1 Missense_Mutation p.G216R 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-GU-A767-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.46 deleterious(0.01) probably_damaging(1) TCGA-GU-A767-01 17 7761504 7761504 C T CYB5D1 Missense_Mutation p.R18C 0.06 deleterious(0) probably_damaging(0.973) TCGA-GU-A767-01 17 78796930 78796930 G C RPTOR Missense_Mutation p.R348P 0.06 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 17 78972909 78972909 G T CHMP6 Missense_Mutation p.V188F 0.12 deleterious(0.02) benign(0.068) TCGA-GU-A767-01 18 2616466 2616466 G A NDC80 Missense_Mutation p.D608N 0.26 tolerated(0.07) benign(0.007) TCGA-GU-A767-01 18 5398103 5398103 C T EPB41L3 Missense_Mutation p.E797K 0.11 deleterious(0.04) benign(0.066) TCGA-GU-A767-01 18 580581 580581 G A CETN1 Missense_Mutation p.R58K 0.16 tolerated(0.06) possibly_damaging(0.583) TCGA-GU-A767-01 18 74980746 74980746 C A GALR1 Missense_Mutation p.A313D 0.23 tolerated(0.1) possibly_damaging(0.564) TCGA-GU-A767-01 19 11105504 11105504 G A SMARCA4 Missense_Mutation p.E474K 0.11 probably_damaging(0.932) TCGA-GU-A767-01 19 13058999 13058999 C A RAD23A Silent p.A81A 0.11 TCGA-GU-A767-01 19 1425926 1425926 C A DAZAP1 Silent p.V171V 0.05 TCGA-GU-A767-01 19 16268186 16268186 G A HSH2D 3'Flank 0.15 TCGA-GU-A767-01 19 16965058 16965058 C A SIN3B Silent p.V348V 0.17 TCGA-GU-A767-01 19 17301931 17301931 T G MYO9B Missense_Mutation p.L905R 0.23 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 19 17973396 17973396 G T RPL18A Intron 0.06 TCGA-GU-A767-01 19 1825891 1825891 G C REXO1 Missense_Mutation p.L655V 0.22 deleterious(0) probably_damaging(0.996) TCGA-GU-A767-01 19 18274163 18274163 G C PIK3R2 Missense_Mutation p.D461H 0.41 deleterious(0.01) probably_damaging(0.942) TCGA-GU-A767-01 19 18507364 18507364 A G LRRC25 Missense_Mutation p.L137P 0.09 tolerated(0.13) probably_damaging(0.965) TCGA-GU-A767-01 19 22604997 22604997 C A ZNF98 Missense_Mutation p.M10I 0.16 deleterious(0.02) benign(0.031) TCGA-GU-A767-01 19 35611990 35611990 G C FXYD3 Missense_Mutation p.V74L 0.08 tolerated(0.28) possibly_damaging(0.458) TCGA-GU-A767-01 19 36347953 36347953 C G KIRREL2 5'UTR 0.36 TCGA-GU-A767-01 19 36558266 36558266 C T WDR62 Missense_Mutation p.S207L 0.45 deleterious(0) probably_damaging(0.99) TCGA-GU-A767-01 19 37238956 37238956 G T ZNF850 Missense_Mutation p.L996I 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-GU-A767-01 19 3743972 3743972 G A TJP3 Missense_Mutation p.V636M 0.23 deleterious(0) probably_damaging(0.94) TCGA-GU-A767-01 19 37904467 37904467 G T ZNF569 Missense_Mutation p.Q365K 0.12 tolerated(0.32) probably_damaging(0.977) TCGA-GU-A767-01 19 38056009 38056009 G C ZNF571 Missense_Mutation p.H441D 0.07 deleterious(0) probably_damaging(0.922) TCGA-GU-A767-01 19 38103965 38103965 G C ZNF540 Missense_Mutation p.R595T 0.07 tolerated(1) benign(0.012) TCGA-GU-A767-01 19 38990455 38990455 G A RYR1 Missense_Mutation p.R2403H 0.33 benign(0.256) TCGA-GU-A767-01 19 39923869 39923869 C T RPS16 3'UTR 0.27 TCGA-GU-A767-01 19 40368833 40368833 C G FCGBP Missense_Mutation p.G4172A 0.09 probably_damaging(0.939) TCGA-GU-A767-01 19 40882643 40882643 G T PLD3 Missense_Mutation p.A383S 0.17 tolerated(0.2) benign(0.023) TCGA-GU-A767-01 19 41938286 41938286 G T ATP5SL Missense_Mutation p.D214E 0.11 deleterious(0.01) possibly_damaging(0.792) TCGA-GU-A767-01 19 42937150 42937150 G C CXCL17 Missense_Mutation p.F80L 0.15 tolerated(0.66) benign(0.006) TCGA-GU-A767-01 19 43411298 43411298 G A PSG6 Missense_Mutation p.S339L 0.06 deleterious(0.01) possibly_damaging(0.728) TCGA-GU-A767-01 19 44099419 44099419 G C IRGQ Missense_Mutation p.I24M 0.22 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-GU-A767-01 19 44500566 44500566 G A ZNF155 Missense_Mutation p.C197Y 0.12 tolerated(1) probably_damaging(0.974) TCGA-GU-A767-01 19 44586256 44586256 C T ZNF284 Missense_Mutation p.S78L 0.28 tolerated(0.23) benign(0.049) TCGA-GU-A767-01 19 44980914 44980914 T C ZNF180 Missense_Mutation p.H595R 0.12 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 19 46005352 46005352 G A PPM1N 3'Flank 0.25 TCGA-GU-A767-01 19 46825179 46825179 C G HIF3A Missense_Mutation p.P431A 0.10 deleterious(0.03) possibly_damaging(0.593) TCGA-GU-A767-01 19 47944679 47944679 C G SLC8A2 Missense_Mutation p.K594N 0.33 tolerated(0.31) possibly_damaging(0.712) TCGA-GU-A767-01 19 48343213 48343213 C T CRX Nonsense_Mutation p.Q297* 0.32 TCGA-GU-A767-01 19 49652580 49652580 G A PPFIA3 Missense_Mutation p.E1118K 0.12 deleterious(0.01) possibly_damaging(0.894) TCGA-GU-A767-01 19 50165429 50165429 G T IRF3 Missense_Mutation p.T253K 0.19 tolerated(0.08) benign(0.243) TCGA-GU-A767-01 19 51013640 51013640 C T JOSD2 Missense_Mutation p.E17K 0.30 deleterious(0) probably_damaging(0.996) TCGA-GU-A767-01 19 51165528 51165528 C A SHANK1 Silent p.G2060G 0.16 TCGA-GU-A767-01 19 53383941 53383941 G A ZNF320 Silent p.L480L 0.08 TCGA-GU-A767-01 19 53454401 53454401 C T ZNF816 Silent p.K209K 0.18 TCGA-GU-A767-01 19 53994116 53994116 G A ZNF813 Missense_Mutation p.M210I 0.15 tolerated(0.84) benign(0.009) TCGA-GU-A767-01 19 54179039 54179039 T C MIR520E RNA 0.15 TCGA-GU-A767-01 19 54197651 54197651 G T MIR526B RNA 0.10 TCGA-GU-A767-01 19 56545013 56545013 A T NLRP5 Missense_Mutation p.E851D 0.10 tolerated(0.55) benign(0.012) TCGA-GU-A767-01 19 5784060 5784060 G T PRR22 Missense_Mutation p.F66L 0.08 deleterious(0.04) probably_damaging(0.987) TCGA-GU-A767-01 19 8922084 8922084 G C ZNF558 Nonsense_Mutation p.S361* 0.28 TCGA-GU-A767-01 19 8922672 8922672 G C ZNF558 Missense_Mutation p.S165C 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-GU-A767-01 19 9074153 9074153 G T MUC16 Silent p.L4431L 0.24 TCGA-GU-A767-01 19 9581978 9581978 T A ZNF560 Silent p.I105I 0.09 TCGA-GU-A767-01 1 10364526 10364526 C G KIF1B Intron 0.09 TCGA-GU-A767-01 1 108686315 108686315 C T SLC25A24 Silent p.L316L 0.08 TCGA-GU-A767-01 1 111490543 111490543 A T LRIF1 3'UTR 0.10 TCGA-GU-A767-01 1 111983791 111983791 G C WDR77 3'UTR 0.21 TCGA-GU-A767-01 1 113252886 113252886 G T PPM1J Missense_Mutation p.P473T 0.14 tolerated(0.09) benign(0.118) TCGA-GU-A767-01 1 11561371 11561371 T A PTCHD2 Missense_Mutation p.F108I 0.21 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-GU-A767-01 1 11766606 11766606 G C DRAXIN Silent p.L97L 0.29 TCGA-GU-A767-01 1 12337372 12337372 G T VPS13D Missense_Mutation p.G1243C 0.14 benign(0.321) TCGA-GU-A767-01 1 148015674 148015674 G A NBPF14 Silent p.A325A 0.11 TCGA-GU-A767-01 1 148251848 148251848 G C NBPF20 3'UTR 0.04 TCGA-GU-A767-01 1 151288138 151288138 G A PI4KB Missense_Mutation p.R286C 0.05 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 1 151373008 151373008 G A PSMB4 Silent p.S146S 0.06 TCGA-GU-A767-01 1 152732104 152732104 C G KPRP Missense_Mutation p.Q14E 0.12 deleterious(0.01) benign(0.013) TCGA-GU-A767-01 1 152749101 152749101 C A LCE1F Missense_Mutation p.S85Y 0.28 tolerated_low_confidence(0.28) unknown(0) TCGA-GU-A767-01 1 153346223 153346223 G T S100A12 3'UTR 0.21 TCGA-GU-A767-01 1 155294548 155294548 G C RUSC1 Intron 0.26 TCGA-GU-A767-01 1 155631046 155631046 G A YY1AP1 Intron 0.19 TCGA-GU-A767-01 1 155736311 155736311 C T GON4L Missense_Mutation p.A985T 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-GU-A767-01 1 158262507 158262507 G A CD1C Silent p.Q244Q 0.05 TCGA-GU-A767-01 1 158595943 158595943 G A SPTA1 Missense_Mutation p.A1968V 0.09 tolerated(0.07) possibly_damaging(0.825) TCGA-GU-A767-01 1 158644378 158644378 T C SPTA1 Silent p.T400T 0.06 TCGA-GU-A767-01 1 158725419 158725419 C A OR6K6 Missense_Mutation p.L272I 0.08 tolerated(0.16) benign(0.308) TCGA-GU-A767-01 1 161161985 161161985 C A ADAMTS4 Missense_Mutation p.V653F 0.12 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 1 16261754 16261754 A C SPEN Missense_Mutation p.I3007L 0.25 benign(0.001) TCGA-GU-A767-01 1 171178014 171178014 G A FMO2 Silent p.K446K 0.19 TCGA-GU-A767-01 1 179363134 179363134 A T AXDND1 Missense_Mutation p.L320F 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-GU-A767-01 1 18808886 18808886 A G KLHDC7A Missense_Mutation p.I471V 0.08 tolerated(0.1) benign(0.036) TCGA-GU-A767-01 1 197008374 197008374 C G F13B 3'UTR 0.19 TCGA-GU-A767-01 1 201757681 201757681 C T NAV1 Silent p.G1027G 0.09 TCGA-GU-A767-01 1 204375372 204375372 C A PPP1R15B Nonsense_Mutation p.E664* 0.06 TCGA-GU-A767-01 1 204985481 204985481 C T NFASC Silent p.D1179D 0.19 TCGA-GU-A767-01 1 209799302 209799302 C A LAMB3 Missense_Mutation p.R556L 0.25 deleterious(0.04) benign(0.275) TCGA-GU-A767-01 1 211093238 211093238 G A KCNH1 Silent p.D402D 0.32 TCGA-GU-A767-01 1 21133958 21133958 C T EIF4G3 Missense_Mutation p.E1544K 0.08 deleterious(0) probably_damaging(0.993) TCGA-GU-A767-01 1 212180008 212180008 T C INTS7 Silent p.P284P 0.14 TCGA-GU-A767-01 1 21551893 21551893 C G ECE1 Missense_Mutation p.W630C 0.13 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 1 218458743 218458743 G T RRP15 Nonsense_Mutation p.G29* 0.30 TCGA-GU-A767-01 1 218478381 218478381 G A RRP15 Silent p.R139R 0.15 TCGA-GU-A767-01 1 226253422 226253422 A C H3F3A Missense_Mutation p.K65T 0.15 deleterious_low_confidence(0.01) benign(0.148) TCGA-GU-A767-01 1 230459215 230459215 C G PGBD5 Missense_Mutation p.V442L 0.12 tolerated(0.13) benign(0.38) TCGA-GU-A767-01 1 236145007 236145007 C T NID1 Missense_Mutation p.R1044Q 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-GU-A767-01 1 238049177 238049177 G C ZP4 Silent p.V283V 0.23 TCGA-GU-A767-01 1 28060687 28060687 G A FAM76A Missense_Mutation p.R150K 0.15 tolerated(0.11) benign(0.373) TCGA-GU-A767-01 1 28086088 28086088 A G FAM76A Missense_Mutation p.K297E 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-GU-A767-01 1 29519736 29519736 T G MECR 3'Flank 0.09 TCGA-GU-A767-01 1 31656756 31656756 G C NKAIN1 Missense_Mutation p.L127V 0.11 tolerated(0.5) benign(0.147) TCGA-GU-A767-01 1 32092409 32092409 T C HCRTR1 Missense_Mutation p.F369S 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-GU-A767-01 1 34180299 34180299 G T CSMD2 Silent p.G1058G 0.07 TCGA-GU-A767-01 1 36360780 36360780 C G AGO1 Missense_Mutation p.F310L 0.08 deleterious(0) benign(0.438) TCGA-GU-A767-01 1 36752516 36752516 G C THRAP3 Missense_Mutation p.G229R 0.09 deleterious(0.02) possibly_damaging(0.755) TCGA-GU-A767-01 1 39945643 39945643 A T MACF1 Missense_Mutation p.M5290L 0.30 benign(0.157) TCGA-GU-A767-01 1 40034492 40034492 C G PABPC4 Missense_Mutation p.E286D 0.16 tolerated(0.56) benign(0.005) TCGA-GU-A767-01 1 42660696 42660696 G A FOXJ3 Missense_Mutation p.P267S 0.04 tolerated(0.49) benign(0.004) TCGA-GU-A767-01 1 43224969 43224969 C G LEPRE1 Silent p.V237V 0.23 TCGA-GU-A767-01 1 43778077 43778077 G A TIE1 Missense_Mutation p.D578N 0.09 tolerated(0.27) probably_damaging(0.925) TCGA-GU-A767-01 1 45088443 45088443 C T RNF220 Missense_Mutation p.A263V 0.25 tolerated(0.36) benign(0.026) TCGA-GU-A767-01 1 45295679 45295679 C G PTCH2 Silent p.L279L 0.12 TCGA-GU-A767-01 1 53676064 53676064 G T CPT2 Missense_Mutation p.A240S 0.17 tolerated(0.55) possibly_damaging(0.512) TCGA-GU-A767-01 1 6270486 6270486 G C RNF207 Silent p.L310L 0.16 TCGA-GU-A767-01 1 62728893 62728893 C T KANK4 Missense_Mutation p.E804K 0.29 tolerated(0.17) benign(0.028) TCGA-GU-A767-01 1 78047533 78047533 C T ZZZ3 Silent p.K612K 0.12 TCGA-GU-A767-01 1 86913436 86913436 G A CLCA2 Silent p.T653T 0.13 TCGA-GU-A767-01 1 8930555 8930555 C T ENO1 Missense_Mutation p.V66I 0.33 tolerated_low_confidence(0.15) benign(0.122) TCGA-GU-A767-01 1 9324150 9324150 G T H6PD Missense_Mutation p.G533V 0.27 tolerated(0.18) benign(0.064) TCGA-GU-A767-01 1 94650485 94650485 G A ARHGAP29 Silent p.I684I 0.14 TCGA-GU-A767-01 20 33337283 33337283 C A NCOA6 Missense_Mutation p.K905N 0.22 probably_damaging(0.996) TCGA-GU-A767-01 20 3726117 3726117 G C HSPA12B Intron 0.45 TCGA-GU-A767-01 20 48600674 48600674 G T SNAI1 Missense_Mutation p.L132F 0.17 deleterious(0.03) probably_damaging(0.924) TCGA-GU-A767-01 20 52830980 52830980 G T PFDN4 Nonsense_Mutation p.E39* 0.18 TCGA-GU-A767-01 20 56093924 56093924 C T CTCFL Missense_Mutation p.D317N 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-GU-A767-01 20 60791326 60791326 C A HRH3 Missense_Mutation p.K358N 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-GU-A767-01 20 62324579 62324579 C T RTEL1 Missense_Mutation p.R1003W 0.10 deleterious(0.05) benign(0.013) TCGA-GU-A767-01 21 19716341 19716341 C G TMPRSS15 Missense_Mutation p.R403T 0.05 tolerated(0.45) probably_damaging(0.944) TCGA-GU-A767-01 21 34018874 34018874 G A SYNJ1 Missense_Mutation p.L1065F 0.07 deleterious(0.03) benign(0.101) TCGA-GU-A767-01 21 39087350 39087350 C A KCNJ6 Missense_Mutation p.R37M 0.13 deleterious(0.04) possibly_damaging(0.56) TCGA-GU-A767-01 21 44171287 44171287 G A PDE9A Missense_Mutation p.D239N 0.18 deleterious(0.03) benign(0.426) TCGA-GU-A767-01 21 46058143 46058143 T A KRTAP10-10 3'UTR 0.31 TCGA-GU-A767-01 22 20781783 20781783 G C SCARF2 Nonsense_Mutation p.S537* 0.15 TCGA-GU-A767-01 22 21354988 21354989 TG - THAP7 Frame_Shift_Del p.H108Qfs*8 0.20 TCGA-GU-A767-01 22 24455741 24455741 A T CABIN1 Missense_Mutation p.E438D 0.07 tolerated(0.38) probably_damaging(0.986) TCGA-GU-A767-01 22 24730513 24730513 C T SPECC1L Silent p.L844L 0.15 TCGA-GU-A767-01 22 28315179 28315179 T C PITPNB Translation_Start_Site p.M1? 0.28 deleterious(0) benign(0.019) TCGA-GU-A767-01 22 36140155 36140155 C G RBFOX2 3'Flank 0.50 TCGA-GU-A767-01 22 38477051 38477051 G T SLC16A8 Missense_Mutation p.L332I 0.31 tolerated(0.26) benign(0.009) TCGA-GU-A767-01 22 39529997 39529997 C G CBX7 Missense_Mutation p.E219Q 0.06 deleterious(0.01) benign(0.399) TCGA-GU-A767-01 22 43195140 43195140 G A ARFGAP3 Missense_Mutation p.P480S 0.10 tolerated(0.05) benign(0.333) TCGA-GU-A767-01 22 43528999 43528999 G C MCAT 3'UTR 0.33 TCGA-GU-A767-01 22 44892718 44892718 T A LDOC1L Nonstop_Mutation p.*240Lext*7 0.17 TCGA-GU-A767-01 22 46722446 46722447 - C GTSE1 Frame_Shift_Ins p.L541Pfs*27 0.18 TCGA-GU-A767-01 22 50664577 50664577 C G TUBGCP6 Missense_Mutation p.E579Q 0.04 tolerated(0.06) possibly_damaging(0.863) TCGA-GU-A767-01 22 50942126 50942126 C T LMF2 Silent p.E606E 0.29 TCGA-GU-A767-01 2 109378569 109378569 G C RANBP2 Missense_Mutation p.G872A 0.19 tolerated(0.05) benign(0.004) TCGA-GU-A767-01 2 116598366 116598366 C A DPP10 Missense_Mutation p.H745Q 0.27 tolerated(0.7) benign(0.015) TCGA-GU-A767-01 2 125281985 125281985 G T CNTNAP5 Missense_Mutation p.S477I 0.14 tolerated(0.16) benign(0.003) TCGA-GU-A767-01 2 139322404 139322404 A G SPOPL Missense_Mutation p.I322V 0.16 tolerated(0.3) benign(0.311) TCGA-GU-A767-01 2 15427254 15427254 C G NBAS Missense_Mutation p.S1694T 0.10 tolerated(0.1) benign(0.002) TCGA-GU-A767-01 2 168099669 168099669 C G XIRP2 Missense_Mutation p.I589M 0.08 probably_damaging(1) TCGA-GU-A767-01 2 179209010 179209010 C G OSBPL6 Intron 0.11 TCGA-GU-A767-01 2 183790348 183790348 T A NCKAP1 3'UTR 0.12 TCGA-GU-A767-01 2 187500929 187500929 A G ITGAV Missense_Mutation p.Y251C 0.18 deleterious(0) probably_damaging(0.928) TCGA-GU-A767-01 2 202899764 202899764 G C FZD7 Missense_Mutation p.E132Q 0.09 deleterious(0.04) probably_damaging(0.996) TCGA-GU-A767-01 2 207814437 207814437 G C CPO Missense_Mutation p.E55D 0.09 deleterious(0.04) probably_damaging(0.927) TCGA-GU-A767-01 2 209185006 209185006 C A PIKFYVE Missense_Mutation p.L705I 0.06 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 2 215884508 215884508 G A ABCA12 Nonsense_Mutation p.R434* 0.12 TCGA-GU-A767-01 2 216861119 216861119 C G MREG Missense_Mutation p.M55I 0.15 tolerated(0.19) benign(0.002) TCGA-GU-A767-01 2 219895517 219895517 C T CCDC108 Missense_Mutation p.C352Y 0.19 deleterious(0.03) benign(0.04) TCGA-GU-A767-01 2 220040384 220040384 G A CNPPD1 Silent p.V63V 0.08 TCGA-GU-A767-01 2 226446901 226446901 C T NYAP2 Silent p.F256F 0.08 TCGA-GU-A767-01 2 233393005 233393005 G A CHRND Missense_Mutation p.E93K 0.26 tolerated(0.42) benign(0.003) TCGA-GU-A767-01 2 239184431 239184431 G A PER2 Missense_Mutation p.T134M 0.09 deleterious(0.01) benign(0.341) TCGA-GU-A767-01 2 242441097 242441097 G T STK25 Silent p.L19L 0.35 TCGA-GU-A767-01 2 27799644 27799644 C A C2orf16 Missense_Mutation p.P69T 0.22 deleterious(0.03) possibly_damaging(0.894) TCGA-GU-A767-01 2 27997316 27997316 G A MRPL33 Missense_Mutation p.E23K 0.12 tolerated(0.13) benign(0.001) TCGA-GU-A767-01 2 37234226 37234226 C T HEATR5B Missense_Mutation p.E1582K 0.06 tolerated(0.25) benign(0.037) TCGA-GU-A767-01 2 48915164 48915164 G A LHCGR Missense_Mutation p.S591L 0.15 deleterious(0) benign(0.434) TCGA-GU-A767-01 2 55825918 55825918 T A SMEK2 Silent p.L185L 0.13 TCGA-GU-A767-01 2 73677439 73677439 C T ALMS1 Missense_Mutation p.A1261V 0.08 possibly_damaging(0.89) TCGA-GU-A767-01 2 79386455 79386455 C A REG3A Splice_Site p.X26_splice 0.20 TCGA-GU-A767-01 2 89037505 89037505 G C RPIA Silent p.V250V 0.19 TCGA-GU-A767-01 2 9098689 9098689 G C MBOAT2 Missense_Mutation p.S53C 0.10 deleterious(0) benign(0.008) TCGA-GU-A767-01 2 97427384 97427384 C T CNNM4 Silent p.I216I 0.08 TCGA-GU-A767-01 3 10028333 10028333 C T EMC3 Missense_Mutation p.E5K 0.38 deleterious(0.05) probably_damaging(0.981) TCGA-GU-A767-01 3 10028364 10028364 C G EMC3 5'UTR 0.36 TCGA-GU-A767-01 3 105086243 105086243 G A ALCAM 5'UTR 0.12 TCGA-GU-A767-01 3 107429390 107429390 G C BBX Missense_Mutation p.W28S 0.14 deleterious(0) probably_damaging(0.997) TCGA-GU-A767-01 3 113595068 113595068 C G GRAMD1C Silent p.L140L 0.10 TCGA-GU-A767-01 3 113652374 113652374 G T GRAMD1C Missense_Mutation p.S409I 0.17 deleterious(0) probably_damaging(0.918) TCGA-GU-A767-01 3 119101138 119101138 G C ARHGAP31 Splice_Site p.X144_splice 0.09 TCGA-GU-A767-01 3 121414374 121414374 C T GOLGB1 Missense_Mutation p.E1666K 0.04 probably_damaging(0.987) TCGA-GU-A767-01 3 123813703 123813703 G T KALRN Missense_Mutation p.D7Y 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-GU-A767-01 3 129233251 129233251 G T IFT122 Missense_Mutation p.A1054S 0.16 tolerated(0.15) possibly_damaging(0.747) TCGA-GU-A767-01 3 130284245 130284245 C T COL6A6 Missense_Mutation p.R357W 0.23 deleterious(0.01) probably_damaging(1) TCGA-GU-A767-01 3 134086391 134086391 C G AMOTL2 Missense_Mutation p.R330P 0.14 tolerated(0.16) benign(0.265) TCGA-GU-A767-01 3 156232164 156232164 G T KCNAB1 Missense_Mutation p.A224S 0.11 deleterious(0.02) possibly_damaging(0.863) TCGA-GU-A767-01 3 15633127 15633127 T A HACL1 Silent p.A96A 0.21 TCGA-GU-A767-01 3 186369030 186369030 T C FETUB Silent p.S240S 0.14 TCGA-GU-A767-01 3 31617922 31617922 C T STT3B Missense_Mutation p.H117Y 0.07 tolerated(0.09) benign(0.031) TCGA-GU-A767-01 3 38022299 38022299 G C CTDSPL Missense_Mutation p.E258Q 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-GU-A767-01 3 38760311 38760311 C G SCN10A Missense_Mutation p.E1172Q 0.19 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 3 48501967 48501967 C A ATRIP Missense_Mutation p.A505D 0.28 tolerated(0.08) possibly_damaging(0.608) TCGA-GU-A767-01 3 49064411 49064411 G C IMPDH2 Missense_Mutation p.L201V 0.06 deleterious(0) possibly_damaging(0.764) TCGA-GU-A767-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.39 deleterious(0.04) possibly_damaging(0.846) TCGA-GU-A767-01 3 49935088 49935088 C T MST1R Silent p.E637E 0.07 TCGA-GU-A767-01 3 58097587 58097587 G A FLNB Missense_Mutation p.G852S 0.24 deleterious(0) probably_damaging(0.985) TCGA-GU-A767-01 3 97806750 97806750 C - OR5AC2 Frame_Shift_Del p.H246Ifs*12 0.17 TCGA-GU-A767-01 3 97852116 97852116 C T OR5H1 Missense_Mutation p.S192F 0.18 deleterious(0) possibly_damaging(0.726) TCGA-GU-A767-01 4 100474981 100474981 G C TRMT10A Silent p.A202A 0.15 TCGA-GU-A767-01 4 103870569 103870569 A G SLC9B1 Missense_Mutation p.V76A 0.22 tolerated(0.08) benign(0.023) TCGA-GU-A767-01 4 113574317 113574317 G C LARP7 Missense_Mutation p.E508Q 0.06 deleterious(0) probably_damaging(0.994) TCGA-GU-A767-01 4 114209605 114209605 T C ANK2 Missense_Mutation p.L747P 0.05 probably_damaging(1) TCGA-GU-A767-01 4 123170792 123170792 G T KIAA1109 Nonsense_Mutation p.G1889* 0.09 TCGA-GU-A767-01 4 1321435 1321435 C G MAEA Silent p.L200L 0.17 TCGA-GU-A767-01 4 155243614 155243614 C A DCHS2 Missense_Mutation p.D894Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 4 155528028 155528028 C G FGG Missense_Mutation p.D320H 0.08 deleterious(0.02) probably_damaging(0.953) TCGA-GU-A767-01 4 170634366 170634366 G T CLCN3 Silent p.V762V 0.33 TCGA-GU-A767-01 4 184587422 184587422 G C TRAPPC11 Missense_Mutation p.E73Q 0.09 deleterious(0.05) benign(0.403) TCGA-GU-A767-01 4 2306022 2306022 C A ZFYVE28 Missense_Mutation p.G682V 0.06 tolerated(0.09) benign(0.282) TCGA-GU-A767-01 4 23816109 23816109 A G PPARGC1A Missense_Mutation p.Y333H 0.14 tolerated(0.48) benign(0.006) TCGA-GU-A767-01 4 24556401 24556401 G T DHX15 Missense_Mutation p.H343N 0.04 deleterious(0) possibly_damaging(0.902) TCGA-GU-A767-01 4 2701875 2701875 G A FAM193A Missense_Mutation p.D1035N 0.07 tolerated(0.21) probably_damaging(0.992) TCGA-GU-A767-01 4 39450064 39450065 - G KLB Frame_Shift_Ins p.F967Lfs*4 0.30 TCGA-GU-A767-01 4 39779401 39779401 G A UBE2K Missense_Mutation p.E167K 0.07 tolerated(0.67) benign(0.001) TCGA-GU-A767-01 4 46043089 46043089 T A GABRG1 Missense_Mutation p.K438N 0.12 deleterious(0.01) benign(0.346) TCGA-GU-A767-01 4 6612621 6612621 G A MAN2B2 Missense_Mutation p.M758I 0.10 deleterious(0.01) possibly_damaging(0.734) TCGA-GU-A767-01 4 68506874 68506874 T C UBA6 Missense_Mutation p.I517V 0.13 tolerated(0.76) possibly_damaging(0.669) TCGA-GU-A767-01 4 7032083 7032083 G A TBC1D14 Silent p.R682R 0.13 TCGA-GU-A767-01 4 7774496 7774496 C T AFAP1 Intron 0.30 TCGA-GU-A767-01 4 79360072 79360072 G C FRAS1 Missense_Mutation p.E1795Q 0.05 probably_damaging(0.946) TCGA-GU-A767-01 4 853437 853437 C T GAK Silent p.P1080P 0.09 TCGA-GU-A767-01 5 102519108 102519108 G A PPIP5K2 Silent p.Q1032Q 0.05 TCGA-GU-A767-01 5 140183241 140183241 C G PCDHA3 Intron 0.13 TCGA-GU-A767-01 5 140347192 140347192 G C PCDHAC2 Missense_Mutation p.A281P 0.17 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 5 140529851 140529851 A T PCDHB6 Nonsense_Mutation p.K5* 0.18 TCGA-GU-A767-01 5 140768272 140768272 A T PCDHGB4 Missense_Mutation p.N274I 0.34 deleterious(0) probably_damaging(0.993) TCGA-GU-A767-01 5 140794321 140794321 G A PCDHGA10 Missense_Mutation p.E527K 0.06 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-GU-A767-01 5 140812388 140812388 G A PCDHGA12 Missense_Mutation p.D688N 0.10 tolerated_low_confidence(0.07) benign(0.197) TCGA-GU-A767-01 5 151304191 151304191 G A GLRA1 5'UTR 0.10 TCGA-GU-A767-01 5 176517810 176517810 C A FGFR4 Missense_Mutation p.H140Q 0.29 tolerated(0.65) benign(0.004) TCGA-GU-A767-01 5 176518732 176518732 C T FGFR4 Missense_Mutation p.S217L 0.10 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 5 176936500 176936500 G T DOK3 Nonsense_Mutation p.Y70* 0.05 TCGA-GU-A767-01 5 176958461 176958461 A T FAM193B Intron 0.33 TCGA-GU-A767-01 5 178359680 178359680 C A ZFP2 Missense_Mutation p.H456N 0.10 deleterious(0) possibly_damaging(0.71) TCGA-GU-A767-01 5 179290571 179290571 C T TBC1D9B Silent p.E1210E 0.17 TCGA-GU-A767-01 5 180056417 180056417 C A FLT4 Missense_Mutation p.G276V 0.20 tolerated(0.19) benign(0.021) TCGA-GU-A767-01 5 32126304 32126304 C A GOLPH3 3'UTR 0.17 TCGA-GU-A767-01 5 36971043 36971043 C T NIPBL Missense_Mutation p.P226S 0.08 tolerated_low_confidence(0.08) benign(0.031) TCGA-GU-A767-01 5 75991451 75991451 C G IQGAP2 Missense_Mutation p.S1389C 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-GU-A767-01 5 76129592 76129592 C T F2RL1 Missense_Mutation p.S387F 0.21 tolerated(0.14) unknown(0) TCGA-GU-A767-01 6 114379194 114379194 G T HS3ST5 Missense_Mutation p.L90I 0.12 tolerated(0.1) possibly_damaging(0.727) TCGA-GU-A767-01 6 119283117 119283117 C A FAM184A Missense_Mutation p.K1050N 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-GU-A767-01 6 126249835 126249835 C G NCOA7 Missense_Mutation p.S916C 0.25 deleterious(0.03) benign(0.071) TCGA-GU-A767-01 6 13206177 13206177 G C PHACTR1 Missense_Mutation p.K265N 0.12 tolerated(0.08) possibly_damaging(0.895) TCGA-GU-A767-01 6 139564325 139564325 C A TXLNB Nonsense_Mutation p.E465* 0.15 TCGA-GU-A767-01 6 143093424 143093424 C G HIVEP2 Missense_Mutation p.E818Q 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-GU-A767-01 6 143093757 143093757 C G HIVEP2 Missense_Mutation p.E707Q 0.08 deleterious(0) possibly_damaging(0.588) TCGA-GU-A767-01 6 143093973 143093973 C G HIVEP2 Missense_Mutation p.G635R 0.08 tolerated(0.36) benign(0.377) TCGA-GU-A767-01 6 146256146 146256146 C T SHPRH Missense_Mutation p.D963N 0.18 deleterious(0.04) probably_damaging(0.987) TCGA-GU-A767-01 6 150001523 150001523 C T LATS1 Missense_Mutation p.R694H 0.07 deleterious(0) probably_damaging(0.999) TCGA-GU-A767-01 6 150004847 150004847 C T LATS1 Missense_Mutation p.V460M 0.05 deleterious_low_confidence(0.04) benign(0.021) TCGA-GU-A767-01 6 152476101 152476101 C T SYNE1 Missense_Mutation p.E8019K 0.13 possibly_damaging(0.728) TCGA-GU-A767-01 6 152671416 152671416 C G SYNE1 Missense_Mutation p.E3930Q 0.11 possibly_damaging(0.488) TCGA-GU-A767-01 6 155565884 155565884 C T TIAM2 Silent p.D1170D 0.13 TCGA-GU-A767-01 6 165712950 165712950 C A C6orf118 Missense_Mutation p.Q306H 0.15 tolerated(0.07) benign(0.168) TCGA-GU-A767-01 6 21198321 21198321 C G CDKAL1 Missense_Mutation p.Q457E 0.37 deleterious(0.02) benign(0.005) TCGA-GU-A767-01 6 24520658 24520658 G T ALDH5A1 Silent p.V313V 0.08 TCGA-GU-A767-01 6 26043688 26043688 G A HIST1H2BB Silent p.F66F 0.05 TCGA-GU-A767-01 6 28269826 28269826 A T PGBD1 Missense_Mutation p.Y732F 0.14 deleterious(0.03) benign(0.046) TCGA-GU-A767-01 6 28297140 28297140 C A ZSCAN31 Silent p.G107G 0.05 TCGA-GU-A767-01 6 30887966 30887966 G T VARS2 Missense_Mutation p.M452I 0.24 tolerated(0.41) benign(0.395) TCGA-GU-A767-01 6 31556398 31556398 C A LST1 Missense_Mutation p.T87N 0.32 tolerated(0.39) probably_damaging(0.987) TCGA-GU-A767-01 6 32046946 32046946 G T RNA5SP206 5'Flank 0.08 TCGA-GU-A767-01 6 33286789 33286789 C T DAXX Silent p.R716R 0.16 TCGA-GU-A767-01 6 33608294 33608294 G A ITPR3 Silent p.A41A 0.20 TCGA-GU-A767-01 6 35438491 35438491 C G RPL10A Missense_Mutation p.I206M 0.17 deleterious(0.01) benign(0.394) TCGA-GU-A767-01 6 36168875 36168875 G A BRPF3 Missense_Mutation p.C259Y 0.24 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 6 39073341 39073341 C T SAYSD1 Missense_Mutation p.G140D 0.15 tolerated(0.1) possibly_damaging(0.881) TCGA-GU-A767-01 6 41166031 41166031 C T TREML2 Silent p.E64E 0.22 TCGA-GU-A767-01 6 42993784 42993784 G T RRP36 Missense_Mutation p.D119Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-GU-A767-01 6 43184043 43184043 G C CUL9 Missense_Mutation p.L2028F 0.23 deleterious(0) probably_damaging(0.995) TCGA-GU-A767-01 6 43223528 43223528 G T TTBK1 Silent p.P265P 0.27 TCGA-GU-A767-01 6 57006836 57006836 A G ZNF451 Missense_Mutation p.K316R 0.11 tolerated(0.25) benign(0.242) TCGA-GU-A767-01 6 69703758 69703758 C A BAI3 Missense_Mutation p.F611L 0.04 tolerated(0.62) benign(0.386) TCGA-GU-A767-01 6 74472502 74472502 G A CD109 Silent p.E298E 0.06 TCGA-GU-A767-01 6 75861654 75861654 C T COL12A1 Missense_Mutation p.G1310E 0.19 probably_damaging(1) TCGA-GU-A767-01 6 75865542 75865542 G C COL12A1 Silent p.L1093L 0.09 TCGA-GU-A767-01 6 87966373 87966373 A - ZNF292 Frame_Shift_Del p.T1010Lfs*4 0.24 TCGA-GU-A767-01 6 88853573 88853573 G A CNR1 3'UTR 0.07 TCGA-GU-A767-01 6 90499950 90499950 T C MDN1 Silent p.L342L 0.07 TCGA-GU-A767-01 7 107312612 107312612 C G SLC26A4 Missense_Mutation p.P112A 0.12 deleterious(0.04) possibly_damaging(0.741) TCGA-GU-A767-01 7 117062344 117062344 G A ASZ1 Missense_Mutation p.A92V 0.07 tolerated(0.67) benign(0.002) TCGA-GU-A767-01 7 129938637 129938637 G A CPA4 Silent p.L40L 0.22 TCGA-GU-A767-01 7 129944368 129944368 G T CPA4 Missense_Mutation p.R145S 0.14 tolerated(1) benign(0.001) TCGA-GU-A767-01 7 129944393 129944393 G C CPA4 Missense_Mutation p.E154Q 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-GU-A767-01 7 134645282 134645282 A C CALD1 Splice_Site p.X734_splice 0.05 TCGA-GU-A767-01 7 136939711 136939711 G C PTN Missense_Mutation p.Q4E 0.27 tolerated_low_confidence(0.21) unknown(0) TCGA-GU-A767-01 7 138341220 138341220 G T SVOPL Nonsense_Mutation p.Y169* 0.10 TCGA-GU-A767-01 7 139305246 139305246 C G HIPK2 Silent p.V561V 0.10 TCGA-GU-A767-01 7 140227217 140227217 C A DENND2A Silent p.L802L 0.33 TCGA-GU-A767-01 7 142637481 142637481 C T C7orf34 Missense_Mutation p.S84L 0.09 deleterious(0) possibly_damaging(0.765) TCGA-GU-A767-01 7 144075919 144075919 G A ARHGEF5 Silent p.E1532E 0.05 TCGA-GU-A767-01 7 148524281 148524281 C A EZH2 Missense_Mutation p.G235C 0.08 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 7 150491119 150491119 C A TMEM176B Missense_Mutation p.G82V 0.22 deleterious(0) probably_damaging(0.998) TCGA-GU-A767-01 7 150647494 150647494 G A KCNH2 Silent p.F720F 0.09 TCGA-GU-A767-01 7 150690906 150690906 G C NOS3 Missense_Mutation p.K5N 0.21 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-GU-A767-01 7 150730931 150730931 G C ABCB8 Missense_Mutation p.G112A 0.41 tolerated(0.43) benign(0.002) TCGA-GU-A767-01 7 151845618 151845618 C T KMT2C Missense_Mutation p.C4465Y 0.20 probably_damaging(1) TCGA-GU-A767-01 7 16505318 16505318 G A SOSTDC1 5'UTR 0.12 TCGA-GU-A767-01 7 27169172 27169172 C T HOXA4 Missense_Mutation p.G212E 0.08 deleterious(0) possibly_damaging(0.691) TCGA-GU-A767-01 7 35930307 35930307 C A SEPT7 Missense_Mutation p.T302N 0.31 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 7 37780524 37780524 T A GPR141 Missense_Mutation p.Y177N 0.19 tolerated(0.3) benign(0.007) TCGA-GU-A767-01 7 5521397 5521397 C A FBXL18 3'UTR 0.15 TCGA-GU-A767-01 7 56147348 56147348 G T SUMF2 Silent p.L287L 0.22 TCGA-GU-A767-01 7 73666766 73666766 C G RFC2 Missense_Mutation p.R59T 0.19 deleterious(0.01) benign(0.077) TCGA-GU-A767-01 7 7514264 7514264 C A COL28A1 Nonsense_Mutation p.G424* 0.18 TCGA-GU-A767-01 7 86415773 86415773 A G GRM3 Missense_Mutation p.Y222C 0.11 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 7 92763734 92763734 C A SAMD9L Missense_Mutation p.W517C 0.05 deleterious(0) probably_damaging(1) TCGA-GU-A767-01 7 97873931 97873931 C T TECPR1 Silent p.R161R 0.13 TCGA-GU-A767-01 7 98487965 98487965 C A TRRAP Missense_Mutation p.T53K 0.24 possibly_damaging(0.557) TCGA-GU-A767-01 7 98942128 98942128 G A ARPC1A Missense_Mutation p.E128K 0.16 deleterious(0) benign(0.033) TCGA-GU-A767-01 8 101075788 101075788 G C RGS22 Missense_Mutation p.S403C 0.04 deleterious(0) probably_damaging(0.935) TCGA-GU-A767-01 8 114389001 114389001 C G CSMD3 Intron 0.14 TCGA-GU-A767-01 8 117868468 117868468 C G RAD21 Missense_Mutation p.D292H 0.19 deleterious(0.01) possibly_damaging(0.783) TCGA-GU-A767-01 8 121309827 121309827 G C COL14A1 Silent p.L1438L 0.28 TCGA-GU-A767-01 8 21766705 21766705 G C DOK2 3'UTR 0.15 TCGA-GU-A767-01 8 22926346 22926346 C A TNFRSF10B Missense_Mutation p.G21V 0.47 deleterious(0.04) benign(0.155) TCGA-GU-A767-01 8 27762225 27762225 T C SCARA5 Intron 0.06 TCGA-GU-A767-01 8 28608359 28608359 G C EXTL3 Missense_Mutation p.K912N 0.10 deleterious(0) probably_damaging(0.943) TCGA-GU-A767-01 8 29195976 29195976 C G DUSP4 Missense_Mutation p.A208P 0.17 deleterious(0) probably_damaging(0.994) TCGA-GU-A767-01 8 30705624 30705624 C A TEX15 Nonsense_Mutation p.E304* 0.20 TCGA-GU-A767-01 8 37720625 37720625 T G RAB11FIP1 Missense_Mutation p.S1214R 0.15 tolerated(0.07) benign(0.083) TCGA-GU-A767-01 8 38066693 38066693 C A BAG4 Missense_Mutation p.P266T 0.13 deleterious(0.01) benign(0.317) TCGA-GU-A767-01 8 59358622 59358622 A G UBXN2B Silent p.T276T 0.12 TCGA-GU-A767-01 8 77767703 77767703 C G ZFHX4 Missense_Mutation p.P2849R 0.19 benign(0.067) TCGA-GU-A767-01 8 77767875 77767875 C A ZFHX4 Missense_Mutation p.D2906E 0.22 probably_damaging(0.987) TCGA-GU-A767-01 8 90775202 90775202 C A RIPK2 Missense_Mutation p.L107I 0.09 deleterious(0.03) probably_damaging(1) TCGA-GU-A767-01 9 100258131 100258131 C G TDRD7 Nonsense_Mutation p.S1088* 0.08 TCGA-GU-A767-01 9 112029772 112029772 G T EPB41L4B Missense_Mutation p.L172I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-GU-A767-01 9 112029786 112029786 G A EPB41L4B Missense_Mutation p.S167L 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-GU-A767-01 9 113509975 113509975 C G MUSK Missense_Mutation p.L270V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-GU-A767-01 9 114454415 114454415 T C C9orf84 Missense_Mutation p.Y1217C 0.39 tolerated(0.21) benign(0.001) TCGA-GU-A767-01 9 121929547 121929547 C T BRINP1 Missense_Mutation p.D701N 0.36 deleterious(0.01) benign(0.077) TCGA-GU-A767-01 9 133376484 133376484 T C ASS1 3'UTR 0.20 TCGA-GU-A767-01 9 19356993 19356993 C G DENND4C Missense_Mutation p.S1553C 0.16 deleterious(0) probably_damaging(0.998) TCGA-GU-A767-01 9 21202045 21202045 G A IFNA7 Silent p.L40L 0.06 TCGA-GU-A767-01 9 32630168 32630168 C T TAF1L Missense_Mutation p.G1804R 0.15 tolerated_low_confidence(0.1) benign(0.09) TCGA-GU-A767-01 9 34126363 34126363 G A DCAF12 Nonsense_Mutation p.Q23* 0.50 TCGA-GU-A767-01 9 96859821 96859821 C T PTPDC1 Missense_Mutation p.R323C 0.29 deleterious(0) probably_damaging(0.921) TCGA-GU-A767-01 X 100177920 100177920 G A XKRX Missense_Mutation p.H156Y 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-GU-A767-01 X 100503112 100503112 C T DRP2 Silent p.I429I 0.62 TCGA-GU-A767-01 X 131525070 131525070 C T MBNL3 Silent p.E192E 0.46 TCGA-GU-A767-01 X 135428933 135428933 C G GPR112 Missense_Mutation p.S1023C 0.23 deleterious(0.01) possibly_damaging(0.453) TCGA-GU-A767-01 X 135957456 135957456 T C RBMX Missense_Mutation p.H248R 0.28 tolerated(0.08) probably_damaging(0.958) TCGA-GU-A767-01 X 3240254 3240254 G C MXRA5 Missense_Mutation p.R1158G 0.08 deleterious(0) possibly_damaging(0.766) TCGA-GU-A767-01 X 38146433 38146433 C G RPGR Missense_Mutation p.E607Q 0.13 benign(0.035) TCGA-GU-A767-01 X 41448780 41448780 C G CASK Missense_Mutation p.Q407H 0.15 tolerated(0.17) benign(0.007) TCGA-GU-A767-01 X 48564728 48564728 C T SUV39H1 Silent p.L301L 0.58 TCGA-GU-A767-01 X 79278581 79278581 C T TBX22 Silent p.P66P 0.33 TCGA-GU-A767-01 Y 2847696 2847696 C A ZFY Missense_Mutation p.H690N 0.76 deleterious(0.02) probably_damaging(0.981) TCGA-GU-A767-01 Y 4968262 4968262 G T PCDH11Y Missense_Mutation p.M881I 0.71 deleterious(0.03) benign(0.001) TCGA-GU-AATO-01 10 11504585 11504585 G A USP6NL Missense_Mutation p.S798F 0.03 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GU-AATO-01 10 115489207 115489207 G C CASP7 Missense_Mutation p.E307Q 0.19 tolerated(0.1) benign(0.073) TCGA-GU-AATO-01 10 115529591 115529591 C G PLEKHS1 Missense_Mutation p.L156V 0.20 tolerated(0.13) benign(0.064) TCGA-GU-AATO-01 10 118138846 118138846 G A CCDC172 Silent p.Q251Q 0.10 TCGA-GU-AATO-01 10 122630833 122630833 G C WDR11 Missense_Mutation p.K482N 0.17 tolerated(0.8) benign(0) TCGA-GU-AATO-01 10 122661814 122661814 G A WDR11 Silent p.Q911Q 0.13 TCGA-GU-AATO-01 10 129906408 129906408 C G MKI67 Missense_Mutation p.Q1232H 0.11 deleterious(0) probably_damaging(0.977) TCGA-GU-AATO-01 10 135032547 135032547 C T KNDC1 Silent p.L1605L 0.28 TCGA-GU-AATO-01 10 16866960 16866960 G C CUBN 3'UTR 0.12 TCGA-GU-AATO-01 10 24802314 24802314 G A KIAA1217 Missense_Mutation p.E710K 0.14 deleterious(0) possibly_damaging(0.693) TCGA-GU-AATO-01 10 24833113 24833113 G C KIAA1217 Silent p.V1638V 0.12 TCGA-GU-AATO-01 10 37454070 37454070 C G ANKRD30A Missense_Mutation p.S628C 0.16 tolerated(0.06) possibly_damaging(0.869) TCGA-GU-AATO-01 10 43297619 43297619 G A BMS1 Missense_Mutation p.G761E 0.13 deleterious(0) possibly_damaging(0.662) TCGA-GU-AATO-01 10 4877927 4877927 C G AKR1E2 Missense_Mutation p.R129G 0.10 tolerated(1) benign(0) TCGA-GU-AATO-01 10 5009348 5009348 G A AKR1C1 Intron 0.22 TCGA-GU-AATO-01 10 51808028 51808028 C T RP11-324H6.5 RNA 0.19 TCGA-GU-AATO-01 10 52834502 52834502 C T PRKG1 Missense_Mutation p.S51L 0.25 deleterious(0.01) possibly_damaging(0.511) TCGA-GU-AATO-01 10 68686180 68686180 G A LRRTM3 5'UTR 0.13 TCGA-GU-AATO-01 10 71258051 71258051 G T TSPAN15 Missense_Mutation p.G157W 0.48 deleterious(0) probably_damaging(0.997) TCGA-GU-AATO-01 10 73767200 73767200 C T CHST3 Silent p.L137L 0.40 TCGA-GU-AATO-01 10 91177287 91177287 G A IFIT5 Missense_Mutation p.E111K 0.16 tolerated(0.23) benign(0.004) TCGA-GU-AATO-01 10 95360695 95360695 C T RBP4 Missense_Mutation p.E31K 0.08 tolerated(0.14) benign(0.003) TCGA-GU-AATO-01 11 108040476 108040476 C T NPAT Missense_Mutation p.C1002Y 0.07 tolerated(1) possibly_damaging(0.555) TCGA-GU-AATO-01 11 108384053 108384053 G C EXPH5 Silent p.P727P 0.20 TCGA-GU-AATO-01 11 115099845 115099845 G C CADM1 Missense_Mutation p.L237V 0.29 deleterious(0) probably_damaging(0.989) TCGA-GU-AATO-01 11 117152348 117152348 G T RNF214 Missense_Mutation p.R423S 0.17 deleterious(0.01) possibly_damaging(0.581) TCGA-GU-AATO-01 11 118342797 118342797 C T KMT2A Missense_Mutation p.S308L 0.15 probably_damaging(0.942) TCGA-GU-AATO-01 11 122741983 122741983 A G CRTAM Missense_Mutation p.H353R 0.20 tolerated(0.36) benign(0.004) TCGA-GU-AATO-01 11 124412806 124412806 G C OR8B12 Missense_Mutation p.L249V 0.14 tolerated_low_confidence(0.07) benign(0.314) TCGA-GU-AATO-01 11 124561655 124561655 G A SPA17 Missense_Mutation p.E97K 0.16 tolerated(0.35) benign(0.006) TCGA-GU-AATO-01 11 128680444 128680444 G A FLI1 Missense_Mutation p.G307E 0.25 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 11 14865396 14865396 G A PDE3B Missense_Mutation p.G782R 0.25 tolerated(0.11) benign(0.027) TCGA-GU-AATO-01 11 32414237 32414237 G C WT1 Silent p.L438L 0.20 TCGA-GU-AATO-01 11 34129822 34129822 G C NAT10 Missense_Mutation p.G17A 0.16 deleterious(0.01) benign(0.299) TCGA-GU-AATO-01 11 34489901 34489901 G C CAT Missense_Mutation p.G465R 0.32 deleterious(0.03) benign(0.073) TCGA-GU-AATO-01 11 4674623 4674623 C T OR51E1 Silent p.L289L 0.18 TCGA-GU-AATO-01 11 4703658 4703658 G A OR51E2 Missense_Mutation p.A95V 0.16 deleterious(0.02) benign(0.176) TCGA-GU-AATO-01 11 48285873 48285873 C T OR4X1 Missense_Mutation p.S154F 0.20 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 11 4869971 4869971 A C OR51S1 Missense_Mutation p.I156M 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-GU-AATO-01 11 499017 499017 G C RNH1 Silent p.L204L 0.26 TCGA-GU-AATO-01 11 5862420 5862420 G C OR52E6 Silent p.L236L 0.33 TCGA-GU-AATO-01 11 59245180 59245180 C T OR4D10 Missense_Mutation p.S93F 0.20 deleterious(0.01) benign(0.234) TCGA-GU-AATO-01 11 6048689 6048689 G A OR56A1 Silent p.L82L 0.17 TCGA-GU-AATO-01 11 62291172 62291172 T G AHNAK Missense_Mutation p.K3573Q 0.19 probably_damaging(0.976) TCGA-GU-AATO-01 11 65784633 65784633 G A CATSPER1 Silent p.L738L 0.17 TCGA-GU-AATO-01 11 82880105 82880105 C G PCF11 Missense_Mutation p.Q910E 0.22 tolerated(0.23) benign(0.345) TCGA-GU-AATO-01 11 86086281 86086281 G A CCDC81 Missense_Mutation p.E26K 0.07 deleterious(0.01) possibly_damaging(0.539) TCGA-GU-AATO-01 12 113344821 113344821 C G OAS1 5'UTR 0.13 TCGA-GU-AATO-01 12 12940310 12940310 G T APOLD1 Missense_Mutation p.R188S 0.12 deleterious(0.03) benign(0.086) TCGA-GU-AATO-01 12 14924008 14924008 C T HIST4H4 Missense_Mutation p.R4Q 0.08 deleterious_low_confidence(0.04) benign(0.006) TCGA-GU-AATO-01 12 15747918 15747918 G A PTPRO Silent p.K1198K 0.07 TCGA-GU-AATO-01 12 21995343 21995343 C T ABCC9 Silent p.G1126G 0.19 TCGA-GU-AATO-01 12 26749890 26749890 C T ITPR2 Missense_Mutation p.E1394K 0.21 deleterious(0) probably_damaging(0.984) TCGA-GU-AATO-01 12 27908150 27908150 G C MRPS35 Missense_Mutation p.D247H 0.22 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 12 49444177 49444177 G A KMT2D Missense_Mutation p.S1065L 0.15 benign(0.015) TCGA-GU-AATO-01 12 49521731 49521731 G T TUBA1B 3'UTR 0.16 TCGA-GU-AATO-01 12 53295806 53295806 G A KRT8 Silent p.L153L 0.19 TCGA-GU-AATO-01 12 53818069 53818069 C T AMHR2 Intron 0.43 TCGA-GU-AATO-01 12 53899931 53899931 G A TARBP2 Silent p.%3D 0.48 TCGA-GU-AATO-01 12 56565557 56565557 G A SMARCC2 Silent p.F666F 0.14 TCGA-GU-AATO-01 12 69656252 69656252 G A CPSF6 Silent p.E523E 0.13 TCGA-GU-AATO-01 12 71537979 71537979 C G TSPAN8 Missense_Mutation p.L25F 0.12 deleterious(0.03) benign(0.114) TCGA-GU-AATO-01 12 8612247 8612247 C G CLEC6A Nonsense_Mutation p.S59* 0.12 TCGA-GU-AATO-01 13 114325920 114325920 C T GRK1 Missense_Mutation p.R312W 0.24 deleterious(0.02) possibly_damaging(0.893) TCGA-GU-AATO-01 13 25268604 25268604 C T ATP12A Missense_Mutation p.S473L 0.35 deleterious(0.03) probably_damaging(1) TCGA-GU-AATO-01 13 25418938 25418938 G A RNF17 Missense_Mutation p.E994K 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-GU-AATO-01 13 36424864 36424864 G A DCLK1 Intron 0.17 TCGA-GU-AATO-01 13 36424894 36424894 G A DCLK1 Intron 0.13 TCGA-GU-AATO-01 13 39262718 39262718 G C FREM2 Missense_Mutation p.E413Q 0.11 tolerated(0.18) benign(0.205) TCGA-GU-AATO-01 13 45602031 45602031 G A GPALPP1 Missense_Mutation p.D306N 0.14 deleterious(0.04) probably_damaging(0.99) TCGA-GU-AATO-01 13 45970079 45970079 C T SLC25A30 3'UTR 0.14 TCGA-GU-AATO-01 13 48947585 48947585 C G RB1 Nonsense_Mutation p.S391* 0.69 TCGA-GU-AATO-01 13 61987052 61987052 G A PCDH20 Missense_Mutation p.H394Y 0.09 tolerated(0.21) benign(0.247) TCGA-GU-AATO-01 13 98654749 98654749 G A IPO5 Silent p.L397L 0.12 TCGA-GU-AATO-01 14 100741090 100741090 C T YY1 Missense_Mutation p.H300Y 0.58 deleterious(0.02) benign(0.216) TCGA-GU-AATO-01 14 101493435 101493435 T A MIR543 5'Flank 0.16 TCGA-GU-AATO-01 14 102482234 102482234 G A DYNC1H1 Silent p.T2428T 0.44 TCGA-GU-AATO-01 14 102505508 102505508 G A DYNC1H1 Missense_Mutation p.E3793K 0.15 probably_damaging(0.945) TCGA-GU-AATO-01 14 105452842 105452842 G A C14orf79 Missense_Mutation p.R25Q 0.25 tolerated(0.53) possibly_damaging(0.498) TCGA-GU-AATO-01 14 106109567 106109567 C G IGHG2 Missense_Mutation p.K318N 0.17 deleterious(0) probably_damaging(0.991) TCGA-GU-AATO-01 14 20859211 20859211 C T TEP1 Silent p.T714T 0.26 TCGA-GU-AATO-01 14 21876595 21876595 G A CHD8 Missense_Mutation p.S869F 0.20 deleterious(0) probably_damaging(0.998) TCGA-GU-AATO-01 14 21966379 21966379 C G METTL3 3'UTR 0.22 TCGA-GU-AATO-01 14 23243188 23243188 G A SLC7A7 Silent p.I461I 0.09 TCGA-GU-AATO-01 14 23818517 23818517 G A SLC22A17 Silent p.L164L 0.31 TCGA-GU-AATO-01 14 23863379 23863379 G A MYH6 Silent p.I861I 0.10 TCGA-GU-AATO-01 14 24646675 24646675 G A REC8 Missense_Mutation p.E247K 0.07 tolerated(0.1) benign(0.263) TCGA-GU-AATO-01 14 24648120 24648120 G C REC8 Missense_Mutation p.E400Q 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-GU-AATO-01 14 24683326 24683326 C G MDP1 Missense_Mutation p.M145I 0.09 tolerated(0.31) benign(0.13) TCGA-GU-AATO-01 14 24842959 24842959 G A NFATC4 Missense_Mutation p.E603K 0.10 deleterious(0) possibly_damaging(0.652) TCGA-GU-AATO-01 14 24901494 24901494 C A KHNYN Missense_Mutation p.L343I 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-GU-AATO-01 14 50281502 50281502 C T NEMF Missense_Mutation p.E551K 0.61 deleterious(0) possibly_damaging(0.864) TCGA-GU-AATO-01 14 50671080 50671080 G A SOS2 Silent p.L45L 0.14 TCGA-GU-AATO-01 14 60903564 60903564 C G C14orf39 Nonstop_Mutation p.*588Sext*4 0.67 TCGA-GU-AATO-01 14 65008120 65008120 G A HSPA2 Missense_Mutation p.G185S 0.34 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-GU-AATO-01 14 74533462 74533462 C T ALDH6A1 Silent p.V390V 0.12 TCGA-GU-AATO-01 14 75568451 75568451 G C NEK9 Silent p.P583P 0.07 TCGA-GU-AATO-01 14 76964693 76964693 G A ESRRB Silent p.L398L 0.18 TCGA-GU-AATO-01 15 101929698 101929698 C A PCSK6 Silent p.A426A 0.21 TCGA-GU-AATO-01 15 39882143 39882143 C G THBS1 Missense_Mutation p.I688M 0.25 deleterious(0.03) probably_damaging(0.932) TCGA-GU-AATO-01 15 52246701 52246701 C G LEO1 Silent p.R439R 0.17 TCGA-GU-AATO-01 15 54586090 54586090 C T UNC13C Intron 0.26 TCGA-GU-AATO-01 15 57967259 57967259 C A GCOM1 Missense_Mutation p.L433I 0.24 tolerated(0.14) possibly_damaging(0.603) TCGA-GU-AATO-01 16 28970119 28970119 G C NFATC2IP Missense_Mutation p.E310Q 0.19 deleterious(0.01) probably_damaging(0.982) TCGA-GU-AATO-01 16 29676226 29676226 G A SPN Missense_Mutation p.E393K 0.14 tolerated(0.07) possibly_damaging(0.81) TCGA-GU-AATO-01 16 30128280 30128280 G A MAPK3 Missense_Mutation p.R318W 0.49 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 16 31487420 31487420 G C TGFB1I1 Missense_Mutation p.E268Q 0.15 deleterious(0.01) probably_damaging(1) TCGA-GU-AATO-01 16 67188596 67188596 C T TRADD Missense_Mutation p.E299K 0.24 tolerated(0.05) probably_damaging(0.996) TCGA-GU-AATO-01 16 70605608 70605608 C G SF3B3 Missense_Mutation p.F1182L 0.19 deleterious(0) possibly_damaging(0.734) TCGA-GU-AATO-01 16 71509114 71509114 G A ZNF19 Missense_Mutation p.R446C 0.15 tolerated_low_confidence(0.17) benign(0.002) TCGA-GU-AATO-01 17 13399528 13399528 C A HS3ST3A1 Missense_Mutation p.G403C 0.45 deleterious(0) probably_damaging(0.951) TCGA-GU-AATO-01 17 18178241 18178241 C G TOP3A Missense_Mutation p.E961Q 0.16 tolerated(0.52) benign(0.006) TCGA-GU-AATO-01 17 1936947 1936947 G A DPH1 Silent p.K75K 0.22 TCGA-GU-AATO-01 17 38922848 38922848 C T KRT26 Silent p.L442L 0.09 TCGA-GU-AATO-01 17 40764451 40764451 G C TUBG1 Missense_Mutation p.V136L 0.18 tolerated(0.29) benign(0.115) TCGA-GU-AATO-01 17 41585300 41585300 G A DHX8 Missense_Mutation p.E745K 0.11 deleterious(0) possibly_damaging(0.53) TCGA-GU-AATO-01 17 46621020 46621020 C T HOXB2 Missense_Mutation p.E161K 0.15 deleterious(0) probably_damaging(0.991) TCGA-GU-AATO-01 17 46622154 46622154 C T HOXB2 Silent p.S40S 0.30 TCGA-GU-AATO-01 17 47241449 47241449 G C B4GALNT2 Splice_Site p.X316_splice 0.21 TCGA-GU-AATO-01 17 48263773 48263773 G A COL1A1 Nonsense_Mutation p.Q1304* 0.15 TCGA-GU-AATO-01 17 49280215 49280215 C T MBTD1 Missense_Mutation p.V304I 0.71 deleterious(0.05) possibly_damaging(0.767) TCGA-GU-AATO-01 17 56584222 56584222 C T MTMR4 Silent p.L291L 0.39 TCGA-GU-AATO-01 17 58145012 58145012 C G HEATR6 Missense_Mutation p.E341Q 0.15 tolerated(0.33) benign(0.329) TCGA-GU-AATO-01 17 61769736 61769736 G A MAP3K3 Missense_Mutation p.E568K 0.10 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 17 61877969 61877969 C G DDX42 Missense_Mutation p.H205D 0.09 deleterious(0) probably_damaging(0.997) TCGA-GU-AATO-01 17 62028813 62028813 C T SCN4A Missense_Mutation p.D942N 0.05 tolerated(0.14) benign(0.42) TCGA-GU-AATO-01 17 65105799 65105799 C T HELZ Missense_Mutation p.D1308N 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-GU-AATO-01 17 67521065 67521065 C T MAP2K6 Silent p.L229L 0.82 TCGA-GU-AATO-01 17 72916324 72916324 G C USH1G Missense_Mutation p.Q203E 0.77 tolerated(0.4) benign(0.255) TCGA-GU-AATO-01 17 73969830 73969830 G A ACOX1 Intron 0.30 TCGA-GU-AATO-01 17 75085252 75085252 G C SEC14L1 5'UTR 0.15 TCGA-GU-AATO-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.52 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 17 7612857 7612857 C T EFNB3 Missense_Mutation p.P329L 0.35 deleterious(0) possibly_damaging(0.861) TCGA-GU-AATO-01 17 76415780 76415780 C T PGS1 Intron 0.23 TCGA-GU-AATO-01 17 76502881 76502881 C G DNAH17 Missense_Mutation p.R1571T 0.23 probably_damaging(0.997) TCGA-GU-AATO-01 18 10696247 10696247 C T PIEZO2 Missense_Mutation p.E2226K 0.11 deleterious(0) possibly_damaging(0.727) TCGA-GU-AATO-01 18 13731756 13731756 G T RNMT Missense_Mutation p.K80N 0.18 deleterious(0.04) benign(0.005) TCGA-GU-AATO-01 18 13731836 13731836 G C RNMT Missense_Mutation p.R107T 0.19 tolerated(0.75) benign(0) TCGA-GU-AATO-01 18 19263534 19263534 G T ABHD3 Intron 0.13 TCGA-GU-AATO-01 18 25570145 25570145 C T CDH2 Missense_Mutation p.R505H 0.19 deleterious(0.01) possibly_damaging(0.857) TCGA-GU-AATO-01 18 2762188 2762188 C T SMCHD1 Missense_Mutation p.S1507L 0.17 tolerated(0.11) benign(0.034) TCGA-GU-AATO-01 18 40850554 40850554 G C SYT4 Missense_Mutation p.H344D 0.17 deleterious(0) probably_damaging(0.972) TCGA-GU-AATO-01 18 67836236 67836236 G A RTTN Missense_Mutation p.S515F 0.14 deleterious(0) probably_damaging(0.977) TCGA-GU-AATO-01 18 74617145 74617145 C T ZNF236 Nonsense_Mutation p.Q689* 0.11 TCGA-GU-AATO-01 18 77246776 77246776 G T NFATC1 Missense_Mutation p.R861L 0.29 tolerated(0.5) benign(0.062) TCGA-GU-AATO-01 19 17692038 17692038 G A COLGALT1 Missense_Mutation p.E552K 0.28 deleterious(0.03) possibly_damaging(0.885) TCGA-GU-AATO-01 19 1954023 1954023 G A CSNK1G2 Intron 0.17 TCGA-GU-AATO-01 19 21607134 21607134 C A ZNF493 Nonsense_Mutation p.S558* 0.23 TCGA-GU-AATO-01 19 2853586 2853586 A G ZNF555 Missense_Mutation p.Y508C 0.27 deleterious(0.02) benign(0.026) TCGA-GU-AATO-01 19 3193410 3193410 C T NCLN Silent p.S168S 0.81 TCGA-GU-AATO-01 19 33588718 33588718 C G GPATCH1 Missense_Mutation p.L304V 0.12 deleterious(0.01) possibly_damaging(0.596) TCGA-GU-AATO-01 19 36273703 36273703 G A ARHGAP33 Silent p.A451A 0.13 TCGA-GU-AATO-01 19 39212291 39212291 C T ACTN4 Missense_Mutation p.R469C 0.33 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 19 39225499 39225499 G C CAPN12 Silent p.L566L 0.17 TCGA-GU-AATO-01 19 40542306 40542306 G A ZNF780B Missense_Mutation p.H154Y 0.09 tolerated(1) benign(0.152) TCGA-GU-AATO-01 19 41743981 41743981 C T AXL Missense_Mutation p.H306Y 0.11 tolerated(0.35) probably_damaging(0.962) TCGA-GU-AATO-01 19 42265240 42265240 G C CEACAM6 Missense_Mutation p.E170Q 0.16 tolerated(0.24) possibly_damaging(0.838) TCGA-GU-AATO-01 19 42583557 42583557 G C ZNF574 Missense_Mutation p.D267H 0.14 tolerated(0.11) benign(0.14) TCGA-GU-AATO-01 19 42753629 42753629 G A ERF Missense_Mutation p.P212L 0.22 tolerated(0.37) benign(0.156) TCGA-GU-AATO-01 19 43087450 43087450 C G CEACAM8 Missense_Mutation p.R333T 0.18 tolerated(0.19) benign(0.001) TCGA-GU-AATO-01 19 44777969 44777969 G A ZNF233 Missense_Mutation p.D386N 0.18 tolerated(1) benign(0) TCGA-GU-AATO-01 19 45495945 45495945 G A CLPTM1 Missense_Mutation p.M600I 0.14 tolerated(0.63) benign(0) TCGA-GU-AATO-01 19 47575922 47575922 C T ZC3H4 Missense_Mutation p.E497K 0.12 unknown(0) TCGA-GU-AATO-01 19 54761154 54761154 C T LILRB5 5'Flank 0.29 TCGA-GU-AATO-01 19 54804181 54804181 C A LILRA3 5'UTR 0.09 TCGA-GU-AATO-01 19 56614418 56614418 G A ZNF787 Intron 0.23 TCGA-GU-AATO-01 19 57646431 57646431 C T ZIM3 Missense_Mutation p.G425E 0.15 tolerated(0.14) possibly_damaging(0.518) TCGA-GU-AATO-01 19 5866613 5866613 C G FUT5 Nonstop_Mutation p.*375Sext*20 0.19 TCGA-GU-AATO-01 19 59063459 59063459 C G CHMP2A Missense_Mutation p.D148H 0.13 deleterious(0) probably_damaging(0.998) TCGA-GU-AATO-01 19 5915249 5915249 C T CAPS Silent p.F162F 0.24 TCGA-GU-AATO-01 19 6501535 6501535 C T TUBB4A Missense_Mutation p.E53K 0.14 deleterious_low_confidence(0.03) benign(0.11) TCGA-GU-AATO-01 19 6741137 6741137 G A TRIP10 Splice_Site p.X47_splice 0.48 TCGA-GU-AATO-01 19 9070793 9070793 G C MUC16 Silent p.L5551L 0.27 TCGA-GU-AATO-01 19 9639770 9639770 G A ZNF426 Silent p.F317F 0.20 TCGA-GU-AATO-01 1 100964784 100964784 C A CDC14A Missense_Mutation p.S574Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.807) TCGA-GU-AATO-01 1 110235825 110235825 C G GSTM1 Intron 0.39 TCGA-GU-AATO-01 1 110301281 110301281 G A EPS8L3 Nonsense_Mutation p.R157* 0.13 TCGA-GU-AATO-01 1 115216575 115216575 C T AMPD1 Missense_Mutation p.M676I 0.11 tolerated(0.41) benign(0.034) TCGA-GU-AATO-01 1 12837692 12837692 G A PRAMEF12 Missense_Mutation p.E468K 0.18 deleterious(0.02) probably_damaging(0.953) TCGA-GU-AATO-01 1 144857643 144857643 G C PDE4DIP Silent p.G2137G 0.08 TCGA-GU-AATO-01 1 151262905 151262905 C T ZNF687 Intron 0.24 TCGA-GU-AATO-01 1 151779940 151779940 C G RORC 3'UTR 0.11 TCGA-GU-AATO-01 1 152084370 152084370 C G TCHH Missense_Mutation p.E441D 0.40 unknown(0) TCGA-GU-AATO-01 1 15361256 15361256 G A KAZN Missense_Mutation p.D144N 0.35 deleterious(0) benign(0.076) TCGA-GU-AATO-01 1 154296928 154296928 C G AQP10 Nonsense_Mutation p.S293* 0.17 TCGA-GU-AATO-01 1 154314997 154314997 G A ATP8B2 Missense_Mutation p.E462K 0.18 tolerated(0.33) benign(0.004) TCGA-GU-AATO-01 1 155188709 155188709 G C GBAP1 RNA 0.24 TCGA-GU-AATO-01 1 155271103 155271103 C G PKLR Silent p.L28L 0.16 TCGA-GU-AATO-01 1 155271123 155271123 C G PKLR Missense_Mutation p.D22H 0.16 deleterious_low_confidence(0) possibly_damaging(0.525) TCGA-GU-AATO-01 1 15844681 15844681 C G CASP9 Missense_Mutation p.E114D 0.23 tolerated(0.31) benign(0.002) TCGA-GU-AATO-01 1 159923427 159923427 G C SLAMF9 Silent p.L21L 0.19 TCGA-GU-AATO-01 1 160281792 160281792 C G COPA Missense_Mutation p.M314I 0.09 deleterious(0.03) benign(0.085) TCGA-GU-AATO-01 1 16266023 16266023 G A SPEN 3'UTR 0.28 TCGA-GU-AATO-01 1 165652335 165652335 C T ALDH9A1 Missense_Mutation p.E114K 0.16 deleterious(0.03) benign(0.051) TCGA-GU-AATO-01 1 169771759 169771759 C T C1orf112 Intron 0.37 TCGA-GU-AATO-01 1 170521608 170521608 C G GORAB 3'UTR 0.19 TCGA-GU-AATO-01 1 173808556 173808556 G A DARS2 Missense_Mutation p.E298K 0.16 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 1 186024594 186024594 C G HMCN1 Missense_Mutation p.S2311C 0.20 probably_damaging(0.998) TCGA-GU-AATO-01 1 186276420 186276420 A G PRG4 Silent p.A523A 0.15 TCGA-GU-AATO-01 1 206945632 206945632 C T IL10 Missense_Mutation p.R50K 0.57 tolerated(0.96) benign(0.001) TCGA-GU-AATO-01 1 207195740 207195740 G C C1orf116 Missense_Mutation p.P457A 0.21 tolerated(0.15) benign(0.047) TCGA-GU-AATO-01 1 218475677 218475677 G A RRP15 Missense_Mutation p.D61N 0.13 tolerated(0.1) benign(0.066) TCGA-GU-AATO-01 1 220142229 220142229 G A EPRS Silent p.L1486L 0.13 TCGA-GU-AATO-01 1 230472984 230472984 C T PGBD5 Silent p.L246L 0.46 TCGA-GU-AATO-01 1 236746456 236746456 C T HEATR1 Missense_Mutation p.R761K 0.16 tolerated(0.94) benign(0.001) TCGA-GU-AATO-01 1 24113904 24113904 G A PITHD1 3'UTR 0.24 TCGA-GU-AATO-01 1 2452748 2452748 C T PANK4 Missense_Mutation p.E72K 0.28 tolerated(0.65) benign(0.009) TCGA-GU-AATO-01 1 247027261 247027261 C G AHCTF1 Missense_Mutation p.E1178Q 0.10 deleterious(0.01) probably_damaging(0.917) TCGA-GU-AATO-01 1 248637394 248637394 C G OR2T3 Missense_Mutation p.S248C 0.04 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 1 248737316 248737316 G C OR2T34 Missense_Mutation p.S248C 0.14 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 1 248757005 248757005 G A OR2T10 Missense_Mutation p.S22L 0.11 tolerated(0.12) benign(0.065) TCGA-GU-AATO-01 1 27877465 27877465 C G AHDC1 Missense_Mutation p.D388H 0.23 tolerated(0.12) probably_damaging(0.934) TCGA-GU-AATO-01 1 29542635 29542635 G T MECR Missense_Mutation p.F96L 0.30 tolerated(0.79) benign(0) TCGA-GU-AATO-01 1 33237296 33237296 C T KIAA1522 Missense_Mutation p.P839L 0.10 deleterious(0.05) possibly_damaging(0.65) TCGA-GU-AATO-01 1 33794504 33794504 C G PHC2 Missense_Mutation p.E797Q 0.27 tolerated(0.06) benign(0.031) TCGA-GU-AATO-01 1 33956843 33956843 G T ZSCAN20 Nonsense_Mutation p.E329* 0.18 TCGA-GU-AATO-01 1 38511674 38511674 C A POU3F1 Missense_Mutation p.D248Y 0.32 deleterious(0) probably_damaging(0.992) TCGA-GU-AATO-01 1 39913728 39913728 G C MACF1 Silent p.L4605L 0.21 TCGA-GU-AATO-01 1 43770760 43770760 C T TIE1 Silent p.L99L 0.14 TCGA-GU-AATO-01 1 46033721 46033721 G A AKR1A1 Missense_Mutation p.E142K 0.16 deleterious(0) benign(0.313) TCGA-GU-AATO-01 1 52703742 52703742 G C ZFYVE9 Missense_Mutation p.R218T 0.18 deleterious_low_confidence(0) benign(0.244) TCGA-GU-AATO-01 1 63069637 63069637 C G ANGPTL3 Intron 0.14 TCGA-GU-AATO-01 1 874759 874759 C T SAMD11 Nonsense_Mutation p.Q209* 0.25 TCGA-GU-AATO-01 20 10030355 10030355 C T ANKEF1 Missense_Mutation p.H380Y 0.11 deleterious(0.01) benign(0.034) TCGA-GU-AATO-01 20 18123299 18123299 G T CSRP2BP 5'UTR 0.26 TCGA-GU-AATO-01 20 20029064 20029064 C A CRNKL1 Missense_Mutation p.M287I 0.12 tolerated(0.12) benign(0.348) TCGA-GU-AATO-01 20 210404 210404 G A DEFB129 Missense_Mutation p.E182K 0.15 deleterious_low_confidence(0.03) benign(0.292) TCGA-GU-AATO-01 20 25263871 25263871 C T PYGB Silent p.V526V 0.30 TCGA-GU-AATO-01 20 34084431 34084431 G A CEP250 Missense_Mutation p.E1065K 0.14 benign(0.149) TCGA-GU-AATO-01 20 35219631 35219631 G A TGIF2 Missense_Mutation p.E171K 0.52 tolerated(0.24) benign(0.01) TCGA-GU-AATO-01 20 42331539 42331539 C T MYBL2 Missense_Mutation p.S454F 0.10 deleterious(0) probably_damaging(0.992) TCGA-GU-AATO-01 20 43043207 43043207 G A HNF4A Missense_Mutation p.A185T 0.13 tolerated(0.64) benign(0.001) TCGA-GU-AATO-01 20 43752899 43752899 C G WFDC12 Missense_Mutation p.E29D 0.12 tolerated(0.52) benign(0.425) TCGA-GU-AATO-01 20 44539796 44539796 G C PLTP Missense_Mutation p.I65M 0.17 deleterious(0) probably_damaging(0.954) TCGA-GU-AATO-01 20 44642326 44642326 G A MMP9 Silent p.G547G 0.12 TCGA-GU-AATO-01 20 52198084 52198084 G C ZNF217 Missense_Mutation p.L428V 0.17 tolerated(0.08) possibly_damaging(0.677) TCGA-GU-AATO-01 20 60793658 60793658 G A HRH3 Silent p.F102F 0.15 TCGA-GU-AATO-01 20 61488812 61488812 C G TCFL5 Missense_Mutation p.Q391H 0.17 tolerated(0.07) benign(0.048) TCGA-GU-AATO-01 20 61978168 61978168 G A CHRNA4 Silent p.F602F 0.14 TCGA-GU-AATO-01 20 62221462 62221462 C G GMEB2 Missense_Mutation p.E525Q 0.22 deleterious(0.02) benign(0.329) TCGA-GU-AATO-01 20 62221501 62221501 C T GMEB2 Missense_Mutation p.E512K 0.20 tolerated(0.06) benign(0.08) TCGA-GU-AATO-01 20 62309638 62309638 G A RTEL1 Missense_Mutation p.E350K 0.12 deleterious(0.01) probably_damaging(0.953) TCGA-GU-AATO-01 21 10942751 10942751 G T TPTE Nonsense_Mutation p.Y230* 0.09 TCGA-GU-AATO-01 21 40627645 40627645 C G BRWD1 Missense_Mutation p.Q727H 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-GU-AATO-01 21 46012249 46012249 C T KRTAP10-6 Silent p.E39E 0.15 TCGA-GU-AATO-01 22 20073961 20073961 G A DGCR8 Missense_Mutation p.V159M 0.29 tolerated_low_confidence(0.13) benign(0.001) TCGA-GU-AATO-01 22 22024201 22024201 G A PPIL2 Splice_Site p.X11_splice 0.20 TCGA-GU-AATO-01 22 31671196 31671196 C A LIMK2 Silent p.L537L 0.18 TCGA-GU-AATO-01 22 37466989 37466989 C T TMPRSS6 Missense_Mutation p.D556N 0.15 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 22 38877348 38877348 C T KDELR3 Silent p.L161L 0.20 TCGA-GU-AATO-01 22 46319102 46319102 C T WNT7B Silent p.L228L 0.20 TCGA-GU-AATO-01 22 50678723 50678723 G A TUBGCP6 Missense_Mutation p.S272F 0.47 deleterious(0) probably_damaging(0.995) TCGA-GU-AATO-01 2 113416533 113416533 G A SLC20A1 Missense_Mutation p.A304T 0.25 tolerated(0.21) benign(0.008) TCGA-GU-AATO-01 2 11750940 11750940 C T GREB1 Silent p.I931I 0.13 TCGA-GU-AATO-01 2 128628927 128628927 G C AMMECR1L Silent p.L138L 0.50 TCGA-GU-AATO-01 2 128903520 128903520 C A UGGT1 Missense_Mutation p.F665L 0.18 tolerated(0.39) benign(0.002) TCGA-GU-AATO-01 2 133425998 133425998 C T LYPD1 Silent p.Q55Q 0.24 TCGA-GU-AATO-01 2 141081483 141081483 G A LRP1B Missense_Mutation p.H4165Y 0.17 benign(0.152) TCGA-GU-AATO-01 2 15330524 15330524 C T NBAS Missense_Mutation p.D2146N 0.12 tolerated(0.11) benign(0.045) TCGA-GU-AATO-01 2 160295023 160295023 G A BAZ2B Nonsense_Mutation p.Q362* 0.29 TCGA-GU-AATO-01 2 172926258 172926258 C T METAP1D Missense_Mutation p.H25Y 0.22 tolerated(0.26) benign(0.113) TCGA-GU-AATO-01 2 179236858 179236858 C G OSBPL6 Silent p.L456L 0.34 TCGA-GU-AATO-01 2 179425151 179425151 A G TTN Missense_Mutation p.C28570R 0.68 TCGA-GU-AATO-01 2 179437255 179437255 G C TTN Missense_Mutation p.S24535C 0.14 TCGA-GU-AATO-01 2 197755629 197755629 C T PGAP1 Missense_Mutation p.E366K 0.12 tolerated(0.25) benign(0.001) TCGA-GU-AATO-01 2 1983519 1983519 G A MYT1L Missense_Mutation p.R11C 0.23 deleterious(0) unknown(0) TCGA-GU-AATO-01 2 198949350 198949350 G T PLCL1 Missense_Mutation p.G370V 0.17 deleterious(0) probably_damaging(0.992) TCGA-GU-AATO-01 2 20101661 20101661 G C TTC32 5'UTR 0.13 TCGA-GU-AATO-01 2 204016299 204016299 G C NBEAL1 Missense_Mutation p.L1829F 0.20 deleterious(0) possibly_damaging(0.897) TCGA-GU-AATO-01 2 207570579 207570579 G A DYTN Silent p.L105L 0.35 TCGA-GU-AATO-01 2 27604392 27604392 G A PPM1G 3'UTR 0.11 TCGA-GU-AATO-01 2 32422846 32422846 C T SLC30A6 Missense_Mutation p.L246F 0.12 tolerated(0.33) benign(0.02) TCGA-GU-AATO-01 2 32475994 32475994 C G NLRC4 Silent p.L313L 0.13 TCGA-GU-AATO-01 2 3391962 3391962 G A TRAPPC12 Missense_Mutation p.E190K 0.14 tolerated_low_confidence(0.14) benign(0.009) TCGA-GU-AATO-01 2 37036036 37036036 C G VIT Missense_Mutation p.S604C 0.11 deleterious(0) probably_damaging(0.982) TCGA-GU-AATO-01 2 37873476 37873476 G A CDC42EP3 Silent p.F85F 0.14 TCGA-GU-AATO-01 2 70188209 70188209 T A ASPRV1 Missense_Mutation p.K204N 0.32 tolerated(0.45) benign(0.39) TCGA-GU-AATO-01 2 71211306 71211306 G C ANKRD53 Intron 0.11 TCGA-GU-AATO-01 2 71591155 71591155 G A ZNF638 Missense_Mutation p.R497K 0.15 deleterious(0.03) probably_damaging(0.99) TCGA-GU-AATO-01 2 95715355 95715355 C G MAL Silent p.L97L 0.21 TCGA-GU-AATO-01 2 97267467 97267467 C T KANSL3 Silent p.P843P 0.17 TCGA-GU-AATO-01 3 101383486 101383486 C T ZBTB11 Missense_Mutation p.E566K 0.47 deleterious(0.02) benign(0.092) TCGA-GU-AATO-01 3 107492444 107492444 G C BBX Missense_Mutation p.E626Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-GU-AATO-01 3 111602980 111602980 A T PHLDB2 Missense_Mutation p.E19V 0.15 deleterious_low_confidence(0.03) benign(0.147) TCGA-GU-AATO-01 3 111845849 111845849 C T GCSAM Missense_Mutation p.D61N 0.13 tolerated(0.16) probably_damaging(0.993) TCGA-GU-AATO-01 3 119101193 119101193 G C ARHGAP31 Missense_Mutation p.K162N 0.14 tolerated(0.05) possibly_damaging(0.872) TCGA-GU-AATO-01 3 120469780 120469780 C T GTF2E1 Silent p.F127F 0.11 TCGA-GU-AATO-01 3 131261497 131261497 C T CPNE4 Silent p.Q481Q 0.14 TCGA-GU-AATO-01 3 132242483 132242483 C G DNAJC13 Missense_Mutation p.L1996V 0.14 tolerated(0.32) benign(0.13) TCGA-GU-AATO-01 3 13381383 13381383 C T NUP210 Missense_Mutation p.E1148K 0.20 deleterious(0.03) benign(0.292) TCGA-GU-AATO-01 3 136574136 136574136 C G SLC35G2 Missense_Mutation p.I278M 0.46 deleterious(0.02) probably_damaging(0.98) TCGA-GU-AATO-01 3 160395581 160395581 G T ARL14 Silent p.R149R 0.17 TCGA-GU-AATO-01 3 167747690 167747690 C G GOLIM4 Missense_Mutation p.Q437H 0.25 deleterious(0.02) benign(0.047) TCGA-GU-AATO-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.52 deleterious(0.02) probably_damaging(0.959) TCGA-GU-AATO-01 3 185434433 185434433 C G C3orf65 Nonsense_Mutation p.S89* 0.12 TCGA-GU-AATO-01 3 192980881 192980881 G A HRASLS Missense_Mutation p.E193K 0.20 tolerated(0.17) benign(0.084) TCGA-GU-AATO-01 3 195515644 195515644 G A MUC4 Missense_Mutation p.P936L 0.43 unknown(0) TCGA-GU-AATO-01 3 36779888 36779888 C G DCLK3 Missense_Mutation p.R88T 0.09 deleterious(0) benign(0.118) TCGA-GU-AATO-01 3 47460153 47460153 C T SCAP Silent p.T707T 0.12 TCGA-GU-AATO-01 3 51708532 51708532 C G TEX264 Missense_Mutation p.S71C 0.13 tolerated(0.13) benign(0.038) TCGA-GU-AATO-01 3 96706829 96706829 C T EPHA6 Missense_Mutation p.S369F 0.12 tolerated(0.13) benign(0.23) TCGA-GU-AATO-01 4 100827681 100827681 C G DNAJB14 Missense_Mutation p.R242T 0.12 deleterious(0.01) benign(0.42) TCGA-GU-AATO-01 4 100871341 100871341 G A H2AFZ 5'UTR 0.09 TCGA-GU-AATO-01 4 105412051 105412051 C T CXXC4 Silent p.K303K 0.17 TCGA-GU-AATO-01 4 114275804 114275804 C G ANK2 Silent p.L2010L 0.13 TCGA-GU-AATO-01 4 122723908 122723908 G A EXOSC9 Missense_Mutation p.E81K 0.12 deleterious(0) probably_damaging(0.971) TCGA-GU-AATO-01 4 128703774 128703774 C T HSPA4L Silent p.I23I 0.15 TCGA-GU-AATO-01 4 128949908 128949908 C G C4orf29 Missense_Mutation p.H326Q 0.07 tolerated(0.6) benign(0.002) TCGA-GU-AATO-01 4 169382907 169382907 G A DDX60L Silent p.L183L 0.15 TCGA-GU-AATO-01 4 183675784 183675784 G A TENM3 Missense_Mutation p.D1422N 0.28 tolerated(0.05) benign(0.021) TCGA-GU-AATO-01 4 184368296 184368296 G C CDKN2AIP Missense_Mutation p.E487Q 0.12 deleterious(0) benign(0.16) TCGA-GU-AATO-01 4 41748152 41748152 G T PHOX2B Missense_Mutation p.P206H 0.54 deleterious_low_confidence(0) unknown(0) TCGA-GU-AATO-01 4 57889713 57889713 C G POLR2B Silent p.L911L 0.10 TCGA-GU-AATO-01 4 6642857 6642857 G T MRFAP1 Nonsense_Mutation p.E90* 0.41 TCGA-GU-AATO-01 4 73280587 73280587 C G ADAMTS3 Missense_Mutation p.K202N 0.10 deleterious(0) benign(0.184) TCGA-GU-AATO-01 4 76817426 76817426 C T PPEF2 Missense_Mutation p.R18K 0.22 tolerated(1) benign(0) TCGA-GU-AATO-01 4 76817496 76817496 C G PPEF2 5'UTR 0.20 TCGA-GU-AATO-01 4 76944566 76944566 G C CXCL10 Missense_Mutation p.L7V 0.10 tolerated(0.18) benign(0.099) TCGA-GU-AATO-01 4 8218691 8218691 C G SH3TC1 Missense_Mutation p.F212L 0.16 tolerated(0.2) benign(0.013) TCGA-GU-AATO-01 4 8239337 8239337 G C SH3TC1 Missense_Mutation p.E1231D 0.13 deleterious(0.01) probably_damaging(0.931) TCGA-GU-AATO-01 4 88356158 88356158 C T NUDT9 Missense_Mutation p.H45Y 0.13 tolerated(0.45) benign(0.003) TCGA-GU-AATO-01 4 88987007 88987007 G A PKD2 Missense_Mutation p.M778I 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-GU-AATO-01 4 89186272 89186272 C T PPM1K Missense_Mutation p.D290N 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-GU-AATO-01 4 96090484 96090484 C T UNC5C Silent p.Q899Q 0.20 TCGA-GU-AATO-01 5 100147636 100147636 C T ST8SIA4 Missense_Mutation p.R332K 0.24 possibly_damaging(0.456) TCGA-GU-AATO-01 5 112174502 112174502 C T APC Nonsense_Mutation p.Q1071* 0.11 TCGA-GU-AATO-01 5 121786428 121786428 C T SNCAIP Missense_Mutation p.S629L 0.29 deleterious(0) probably_damaging(0.997) TCGA-GU-AATO-01 5 133902051 133902051 C T JADE2 Silent p.Y405Y 0.20 TCGA-GU-AATO-01 5 137802686 137802686 C T EGR1 Missense_Mutation p.S183F 0.27 deleterious(0.03) possibly_damaging(0.788) TCGA-GU-AATO-01 5 140482131 140482131 G A PCDHB3 Missense_Mutation p.R633H 0.34 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-GU-AATO-01 5 140558223 140558223 G C PCDHB8 Missense_Mutation p.R203P 0.09 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-GU-AATO-01 5 140762932 140762932 G C PCDHGA7 Missense_Mutation p.E156Q 0.25 tolerated_low_confidence(0.09) possibly_damaging(0.862) TCGA-GU-AATO-01 5 141309802 141309802 C G KIAA0141 Silent p.L239L 0.22 TCGA-GU-AATO-01 5 142680325 142680325 C T NR3C1 Missense_Mutation p.R492Q 0.25 deleterious(0.01) probably_damaging(0.919) TCGA-GU-AATO-01 5 162884087 162884087 C G NUDCD2 Splice_Site p.X80_splice 0.22 TCGA-GU-AATO-01 5 169805940 169805940 G A KCNMB1 Missense_Mutation p.T115M 0.19 tolerated(0.1) benign(0.013) TCGA-GU-AATO-01 5 1879657 1879657 C T IRX4 Missense_Mutation p.E233K 0.23 tolerated(0.12) benign(0.011) TCGA-GU-AATO-01 5 33989416 33989416 C A AMACR Nonsense_Mutation p.E311* 0.13 TCGA-GU-AATO-01 5 36049368 36049368 C T UGT3A2 Missense_Mutation p.E156K 0.20 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 5 37326016 37326016 C A NUP155 Missense_Mutation p.R693I 0.12 tolerated(0.28) benign(0.096) TCGA-GU-AATO-01 5 42807125 42807125 G A SEPP1 Nonsense_Mutation p.R97* 0.14 TCGA-GU-AATO-01 5 52223433 52223433 G T ITGA1 Missense_Mutation p.C878F 0.16 deleterious(0) probably_damaging(0.979) TCGA-GU-AATO-01 5 61677035 61677035 G A KIF2A Missense_Mutation p.E702K 0.28 tolerated(0.26) probably_damaging(0.917) TCGA-GU-AATO-01 5 82834658 82834658 C G VCAN Missense_Mutation p.H1946D 0.23 deleterious(0.01) benign(0.108) TCGA-GU-AATO-01 6 100056665 100056665 C G PRDM13 Missense_Mutation p.L65V 0.19 tolerated(0.33) benign(0.387) TCGA-GU-AATO-01 6 100368957 100368957 G C MCHR2 Silent p.L294L 0.23 TCGA-GU-AATO-01 6 117704553 117704553 G A ROS1 Missense_Mutation p.S808L 0.12 deleterious(0) probably_damaging(0.93) TCGA-GU-AATO-01 6 117923233 117923233 C T GOPC Silent p.L73L 0.17 TCGA-GU-AATO-01 6 125231981 125231981 C T RP11-510H23.1 RNA 0.24 TCGA-GU-AATO-01 6 134373664 134373664 G A SLC2A12 5'UTR 0.18 TCGA-GU-AATO-01 6 139186278 139186278 C T ECT2L Silent p.F479F 0.18 TCGA-GU-AATO-01 6 152527335 152527335 C A SYNE1 Nonsense_Mutation p.E7663* 0.49 TCGA-GU-AATO-01 6 157528313 157528313 G T ARID1B Missense_Mutation p.W2013L 0.44 probably_damaging(0.99) TCGA-GU-AATO-01 6 157528731 157528731 G C ARID1B Missense_Mutation p.Q2152H 0.51 probably_damaging(0.995) TCGA-GU-AATO-01 6 157528732 157528732 A T ARID1B Nonsense_Mutation p.K2153* 0.52 TCGA-GU-AATO-01 6 159464642 159464642 C T TAGAP Missense_Mutation p.D43N 0.11 deleterious(0.03) benign(0.172) TCGA-GU-AATO-01 6 24843332 24843332 C T FAM65B Missense_Mutation p.E560K 0.48 deleterious(0.05) benign(0.205) TCGA-GU-AATO-01 6 26507020 26507020 C T BTN1A1 Silent p.N273N 0.46 TCGA-GU-AATO-01 6 27216929 27216929 G A PRSS16 Missense_Mutation p.E130K 0.08 deleterious(0) probably_damaging(0.998) TCGA-GU-AATO-01 6 27806475 27806475 G A HIST1H2BN Silent p.K12K 0.14 TCGA-GU-AATO-01 6 29640752 29640752 G C ZFP57 Nonsense_Mutation p.S379* 0.05 TCGA-GU-AATO-01 6 31083952 31083952 G A CDSN Silent p.S480S 0.12 TCGA-GU-AATO-01 6 31625065 31625065 C G APOM Silent p.L111L 0.06 TCGA-GU-AATO-01 6 31827562 31827562 C T NEU1 Silent p.E394E 0.22 TCGA-GU-AATO-01 6 31902153 31902153 G A C2 Intron 0.13 TCGA-GU-AATO-01 6 33172455 33172455 C G HSD17B8 Missense_Mutation p.Q4E 0.20 tolerated(0.43) benign(0.034) TCGA-GU-AATO-01 6 33174493 33174493 G A HSD17B8 3'UTR 0.08 TCGA-GU-AATO-01 6 33261722 33261722 C G RGL2 Intron 0.12 TCGA-GU-AATO-01 6 33281147 33281147 C A TAPBP Missense_Mutation p.A106S 0.27 deleterious(0) probably_damaging(0.931) TCGA-GU-AATO-01 6 36651987 36651988 - T CDKN1A Frame_Shift_Ins p.M38Nfs*10 0.44 TCGA-GU-AATO-01 6 39330215 39330215 C G KIF6 Missense_Mutation p.K647N 0.24 deleterious(0.04) probably_damaging(1) TCGA-GU-AATO-01 6 41533515 41533515 C A FOXP4 Missense_Mutation p.A6D 0.14 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-GU-AATO-01 6 43325168 43325168 C T ZNF318 Missense_Mutation p.G295E 0.18 probably_damaging(0.967) TCGA-GU-AATO-01 6 47754339 47754339 C G OPN5 Missense_Mutation p.I73M 0.14 tolerated(0.07) possibly_damaging(0.611) TCGA-GU-AATO-01 6 51915088 51915088 G C PKHD1 Missense_Mutation p.Q716E 0.10 deleterious(0.01) possibly_damaging(0.574) TCGA-GU-AATO-01 6 6626528 6626528 G C LY86 Missense_Mutation p.E76Q 0.19 tolerated(0.26) benign(0.344) TCGA-GU-AATO-01 6 70037752 70037752 C T BAI3 Silent p.T1002T 0.16 TCGA-GU-AATO-01 6 7230488 7230488 G A RREB1 Missense_Mutation p.R719H 0.28 deleterious(0) probably_damaging(1) TCGA-GU-AATO-01 6 74228234 74228234 G C EEF1A1 Missense_Mutation p.S291C 0.16 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-GU-AATO-01 6 7567656 7567656 C T DSP Silent p.L372L 0.18 TCGA-GU-AATO-01 6 8064508 8064508 G T BLOC1S5 Silent p.L34L 0.16 TCGA-GU-AATO-01 6 99817477 99817477 C A COQ3 Nonstop_Mutation p.*370Lext*26 0.13 TCGA-GU-AATO-01 7 100549702 100549702 C T MUC3A Missense_Mutation p.P95S 0.15 deleterious(0.01) unknown(0) TCGA-GU-AATO-01 7 102836039 102836039 C G DPY19L2P2 RNA 0.20 TCGA-GU-AATO-01 7 107115109 107115109 G A GPR22 Missense_Mutation p.E202K 0.46 tolerated(0.97) benign(0.026) TCGA-GU-AATO-01 7 111368416 111368416 G A DOCK4 Nonsense_Mutation p.R1939* 0.29 TCGA-GU-AATO-01 7 116436137 116436137 G A MET Missense_Mutation p.E1396K 0.21 tolerated_low_confidence(0.12) benign(0.108) TCGA-GU-AATO-01 7 116771941 116771941 A G ST7 Missense_Mutation p.M190V 0.20 deleterious(0) probably_damaging(0.976) TCGA-GU-AATO-01 7 120911370 120911370 G C CPED1 Missense_Mutation p.L918F 0.17 tolerated(0.05) possibly_damaging(0.776) TCGA-GU-AATO-01 7 131825372 131825372 C T PLXNA4 Silent p.K1808K 0.19 TCGA-GU-AATO-01 7 142750276 142750276 C - OR6V1 Frame_Shift_Del p.L283Sfs*24 0.23 TCGA-GU-AATO-01 7 143017804 143017804 G C CLCN1 Missense_Mutation p.D117H 0.28 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 7 151946985 151946985 C G KMT2C Missense_Mutation p.D597H 0.25 benign(0.264) TCGA-GU-AATO-01 7 155100011 155100011 G A INSIG1 3'UTR 0.17 TCGA-GU-AATO-01 7 158824528 158824528 C T VIPR2 Silent p.L378L 0.24 TCGA-GU-AATO-01 7 47925653 47925653 C G PKD1L1 Splice_Site p.X946_splice 0.18 TCGA-GU-AATO-01 7 48428737 48428737 C T ABCA13 Silent p.V3858V 0.25 TCGA-GU-AATO-01 7 66103995 66103995 G A KCTD7 Missense_Mutation p.E216K 0.28 tolerated(0.16) benign(0.165) TCGA-GU-AATO-01 7 81340800 81340800 C A HGF Missense_Mutation p.D481Y 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-GU-AATO-01 7 91726928 91726928 G C AKAP9 Missense_Mutation p.R3476T 0.30 probably_damaging(0.998) TCGA-GU-AATO-01 8 10159133 10159133 C - MSRA Frame_Shift_Del p.H141Tfs*33 0.22 TCGA-GU-AATO-01 8 106815069 106815069 G A ZFPM2 Missense_Mutation p.G920E 0.22 deleterious(0.03) possibly_damaging(0.717) TCGA-GU-AATO-01 8 120859263 120859263 G A DSCC1 Nonsense_Mutation p.Q182* 0.33 TCGA-GU-AATO-01 8 12958006 12958006 C T DLC1 Missense_Mutation p.A614T 0.23 tolerated(0.34) benign(0.001) TCGA-GU-AATO-01 8 23001980 23001980 C T TNFRSF10D Missense_Mutation p.E313K 0.10 deleterious(0) probably_damaging(0.984) TCGA-GU-AATO-01 8 24346773 24346773 A G ADAM7 Missense_Mutation p.N398S 0.30 tolerated(0.16) benign(0.005) TCGA-GU-AATO-01 8 25261091 25261091 G C DOCK5 Missense_Mutation p.E1648D 0.23 tolerated(0.58) benign(0.001) TCGA-GU-AATO-01 8 70667768 70667768 T A SLCO5A1 Missense_Mutation p.K383N 0.32 tolerated(0.06) benign(0.049) TCGA-GU-AATO-01 8 95523594 95523594 G C KIAA1429 Missense_Mutation p.T1070S 0.29 deleterious(0.01) possibly_damaging(0.869) TCGA-GU-AATO-01 9 101797434 101797434 G C COL15A1 Missense_Mutation p.E740Q 0.24 deleterious(0.03) benign(0.025) TCGA-GU-AATO-01 9 103340782 103340782 C G MURC Silent p.V119V 0.21 TCGA-GU-AATO-01 9 117119185 117119185 G A AKNA Missense_Mutation p.S935L 0.17 deleterious(0) probably_damaging(0.999) TCGA-GU-AATO-01 9 95277474 95277474 G C ECM2 Missense_Mutation p.L165V 0.24 tolerated(0.71) benign(0.006) TCGA-GU-AATO-01 X 107979537 107979537 C T IRS4 Missense_Mutation p.R13K 0.40 deleterious_low_confidence(0.01) benign(0.444) TCGA-GU-AATO-01 X 129040167 129040167 G C UTP14A 5'UTR 0.27 TCGA-GU-AATO-01 X 129361727 129361727 C G ZNF280C Missense_Mutation p.E393Q 0.20 deleterious(0) possibly_damaging(0.701) TCGA-GU-AATO-01 X 134425473 134425473 C G ZNF75D Missense_Mutation p.Q207H 0.39 deleterious(0.02) benign(0.001) TCGA-GU-AATO-01 X 135443724 135443724 G T GPR112 Missense_Mutation p.D2419Y 0.19 deleterious(0) possibly_damaging(0.753) TCGA-GU-AATO-01 X 153694505 153694505 G A PLXNA3 Silent p.E897E 0.37 TCGA-GU-AATO-01 X 22112195 22112195 G C PHEX Missense_Mutation p.R276T 0.38 deleterious(0.04) benign(0.049) TCGA-GU-AATO-01 X 27999223 27999223 C T DCAF8L1 Missense_Mutation p.E77K 0.25 deleterious_low_confidence(0.04) probably_damaging(0.915) TCGA-GU-AATO-01 X 54263498 54263498 C T WNK3 Missense_Mutation p.E1501K 0.29 tolerated(0.13) benign(0.024) TCGA-GU-AATO-01 X 54954190 54954190 G A TRO Missense_Mutation p.M618I 0.29 deleterious(0) unknown(0) TCGA-GU-AATP-01 10 102248677 102248677 G A SEC31B Nonsense_Mutation p.Q1076* 0.07 TCGA-GU-AATP-01 10 102746590 102746590 C A MRPL43 Missense_Mutation p.Q127H 0.12 deleterious(0) probably_damaging(0.948) TCGA-GU-AATP-01 10 102765246 102765246 G C LZTS2 Missense_Mutation p.R367P 0.11 tolerated(0.09) benign(0.422) TCGA-GU-AATP-01 10 104170615 104170615 C T PSD Silent p.K697K 0.22 TCGA-GU-AATP-01 10 106075690 106075690 C G ITPRIP Missense_Mutation p.K40N 0.23 deleterious(0.01) benign(0.424) TCGA-GU-AATP-01 10 115964594 115964594 C T TDRD1 Silent p.V413V 0.30 TCGA-GU-AATP-01 10 121652440 121652440 C T SEC23IP Missense_Mutation p.S49F 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.62) TCGA-GU-AATP-01 10 127798348 127798348 C T ADAM12 Missense_Mutation p.R225Q 0.24 tolerated(0.16) probably_damaging(0.995) TCGA-GU-AATP-01 10 29770653 29770653 C T SVIL Missense_Mutation p.G1654R 0.26 deleterious(0) probably_damaging(0.986) TCGA-GU-AATP-01 10 68687405 68687405 T A LRRTM3 Missense_Mutation p.I244K 0.23 deleterious(0) probably_damaging(0.917) TCGA-GU-AATP-01 10 69926378 69926378 C G MYPN Missense_Mutation p.S643C 0.21 deleterious(0.02) possibly_damaging(0.784) TCGA-GU-AATP-01 10 70706348 70706348 C T DDX50 Nonsense_Mutation p.R726* 0.17 TCGA-GU-AATP-01 10 75559891 75559891 C - ZSWIM8 Frame_Shift_Del p.H1596Qfs*22 0.21 TCGA-GU-AATP-01 10 93870928 93870928 C A CPEB3 Nonsense_Mutation p.E493* 0.24 TCGA-GU-AATP-01 10 96122611 96122611 G A NOC3L 5'UTR 0.49 TCGA-GU-AATP-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.68 TCGA-GU-AATP-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.16 TCGA-GU-AATP-01 11 116692018 116692018 G C APOA4 Silent p.L252L 0.21 TCGA-GU-AATP-01 11 11924854 11924854 G A USP47 Missense_Mutation p.D194N 0.49 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 11 18159610 18159610 G A MRGPRX3 Silent p.L287L 0.42 TCGA-GU-AATP-01 11 18735838 18735838 G C IGSF22 Missense_Mutation p.S595C 0.26 deleterious(0.02) benign(0.034) TCGA-GU-AATP-01 11 18955509 18955509 C T MRGPRX1 Missense_Mutation p.V275M 0.22 deleterious(0.03) possibly_damaging(0.45) TCGA-GU-AATP-01 11 2482874 2482874 G A KCNQ1 Intron 0.44 TCGA-GU-AATP-01 11 33373799 33373799 G C HIPK3 Missense_Mutation p.L1053F 0.32 deleterious(0.01) benign(0.303) TCGA-GU-AATP-01 11 46400035 46400035 G A DGKZ Silent p.R989R 0.19 TCGA-GU-AATP-01 11 47236798 47236798 C G DDB2 Silent p.L37L 0.25 TCGA-GU-AATP-01 11 47308081 47308081 G C MADD Silent p.L883L 0.27 TCGA-GU-AATP-01 11 5323047 5323047 G C OR51B4 Missense_Mutation p.L44V 0.22 deleterious(0.01) benign(0.356) TCGA-GU-AATP-01 11 58972187 58972187 C T DTX4 Silent p.L555L 0.30 TCGA-GU-AATP-01 11 60474494 60474494 G A MS4A8 Missense_Mutation p.E126K 0.53 deleterious(0.04) probably_damaging(0.965) TCGA-GU-AATP-01 11 62287779 62287779 G C AHNAK Missense_Mutation p.L4704V 0.52 probably_damaging(0.999) TCGA-GU-AATP-01 11 62397869 62397869 C G GANAB Missense_Mutation p.E521Q 0.38 deleterious(0.03) probably_damaging(0.948) TCGA-GU-AATP-01 11 63230899 63230899 G C HRASLS5 3'UTR 0.23 TCGA-GU-AATP-01 11 64940365 64940365 G A SPDYC Missense_Mutation p.E243K 0.46 tolerated(0.11) benign(0.058) TCGA-GU-AATP-01 11 65156861 65156861 G A FRMD8 Missense_Mutation p.D39N 0.24 tolerated(0.05) possibly_damaging(0.8) TCGA-GU-AATP-01 11 65167226 65167226 G A FRMD8 Missense_Mutation p.E275K 0.43 deleterious(0.01) benign(0.427) TCGA-GU-AATP-01 11 65638716 65638716 G A EFEMP2 Silent p.G93G 0.26 TCGA-GU-AATP-01 11 67167087 67167087 G C PPP1CA Missense_Mutation p.F167L 0.18 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GU-AATP-01 11 67401659 67401659 C T TBX10 Splice_Site p.X183_splice 0.29 TCGA-GU-AATP-01 11 76990424 76990424 C A GDPD4 Missense_Mutation p.G25V 0.22 deleterious(0) probably_damaging(0.995) TCGA-GU-AATP-01 11 78380889 78380889 G A TENM4 Silent p.T2167T 0.13 TCGA-GU-AATP-01 11 82892905 82892905 G C PCF11 Missense_Mutation p.E1393Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-GU-AATP-01 11 85347284 85347284 G A TMEM126B 3'UTR 0.11 TCGA-GU-AATP-01 11 94917686 94917686 C T SESN3 Missense_Mutation p.E279K 0.40 deleterious(0.02) possibly_damaging(0.489) TCGA-GU-AATP-01 11 94918464 94918464 C T SESN3 Missense_Mutation p.D240N 0.45 tolerated(0.12) probably_damaging(0.914) TCGA-GU-AATP-01 11 95595480 95595480 G A MTMR2 Silent p.L105L 0.25 TCGA-GU-AATP-01 12 103984717 103984717 G A STAB2 Missense_Mutation p.E42K 0.55 tolerated(0.47) benign(0.18) TCGA-GU-AATP-01 12 108626600 108626600 C T WSCD2 Missense_Mutation p.R358C 0.36 deleterious(0) possibly_damaging(0.847) TCGA-GU-AATP-01 12 110252501 110252501 G T TRPV4 Missense_Mutation p.S34Y 0.62 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-AATP-01 12 110252505 110252505 G A TRPV4 Missense_Mutation p.L33F 0.58 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-GU-AATP-01 12 113756852 113756852 T C SLC8B1 Missense_Mutation p.Y240C 0.23 deleterious(0) probably_damaging(0.992) TCGA-GU-AATP-01 12 11992232 11992232 C T ETV6 Missense_Mutation p.H108Y 0.47 deleterious(0.03) probably_damaging(0.943) TCGA-GU-AATP-01 12 122729126 122729126 G A VPS33A Missense_Mutation p.A320V 0.08 tolerated(0.15) benign(0.3) TCGA-GU-AATP-01 12 125396369 125396369 C T UBC Missense_Mutation p.R650K 0.37 tolerated(0.13) possibly_damaging(0.595) TCGA-GU-AATP-01 12 125396371 125396371 C A UBC Missense_Mutation p.Q649H 0.37 deleterious(0) probably_damaging(0.98) TCGA-GU-AATP-01 12 125396581 125396581 C T UBC Silent p.G579G 0.50 TCGA-GU-AATP-01 12 125397084 125397084 C G UBC Missense_Mutation p.D412H 0.35 deleterious(0.02) probably_damaging(0.971) TCGA-GU-AATP-01 12 132325224 132325224 G A MMP17 Missense_Mutation p.E177K 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-GU-AATP-01 12 22671062 22671062 G A C2CD5 Silent p.F270F 0.36 TCGA-GU-AATP-01 12 29485662 29485662 T G FAR2 Splice_Site p.X462_splice 0.39 TCGA-GU-AATP-01 12 4643426 4643426 A C C12orf4 Missense_Mutation p.L74R 0.17 tolerated(0.53) benign(0.011) TCGA-GU-AATP-01 12 49415887 49415887 G T KMT2D Missense_Mutation p.T5487K 0.11 unknown(0) TCGA-GU-AATP-01 12 54394285 54394285 T A HOXC9 Missense_Mutation p.S105T 0.41 deleterious(0.05) benign(0.29) TCGA-GU-AATP-01 12 59267942 59267942 G C LRIG3 Missense_Mutation p.H1004D 0.42 tolerated_low_confidence(0.07) benign(0.021) TCGA-GU-AATP-01 12 6435660 6435660 C A PLEKHG6 Silent p.R531R 0.09 TCGA-GU-AATP-01 12 6436424 6436424 C T PLEKHG6 Missense_Mutation p.P559S 0.10 tolerated(0.28) benign(0.007) TCGA-GU-AATP-01 12 6436606 6436606 C T PLEKHG6 Silent p.L619L 0.06 TCGA-GU-AATP-01 12 6437341 6437341 C G PLEKHG6 3'UTR 0.14 TCGA-GU-AATP-01 12 6439430 6439430 C T TNFRSF1A Intron 0.11 TCGA-GU-AATP-01 12 6439435 6439435 C T TNFRSF1A Missense_Mutation p.E256K 0.10 deleterious(0.04) possibly_damaging(0.878) TCGA-GU-AATP-01 12 6440016 6440016 C T TNFRSF1A Intron 0.15 TCGA-GU-AATP-01 12 6442232 6442232 C T TNFRSF1A Intron 0.15 TCGA-GU-AATP-01 12 64437274 64437274 G C SRGAP1 Silent p.R240R 0.07 TCGA-GU-AATP-01 12 66517668 66517668 C T LLPH Silent p.G114G 0.19 TCGA-GU-AATP-01 12 7025642 7025642 G A ENO2 Silent p.L49L 0.41 TCGA-GU-AATP-01 12 8051572 8051572 C T NANOGP1 RNA 0.16 TCGA-GU-AATP-01 12 8975881 8975881 C T A2ML1 Silent p.L56L 0.43 TCGA-GU-AATP-01 12 91347850 91347850 C A CCER1 Nonsense_Mutation p.E224* 0.11 TCGA-GU-AATP-01 13 32972863 32972863 G C BRCA2 Missense_Mutation p.E3405Q 0.54 tolerated(0.06) benign(0.066) TCGA-GU-AATP-01 13 36878631 36878631 G A SPG20 Silent p.L624L 0.16 TCGA-GU-AATP-01 13 42273230 42273230 G C VWA8 Missense_Mutation p.Q1181E 0.32 tolerated(0.22) benign(0.358) TCGA-GU-AATP-01 13 61987574 61987574 C G PCDH20 Missense_Mutation p.E220Q 0.06 deleterious(0) probably_damaging(1) TCGA-GU-AATP-01 13 79233216 79233216 G A RNF219 Silent p.L14L 0.29 TCGA-GU-AATP-01 14 35550261 35550261 G A FAM177A1 Missense_Mutation p.E180K 0.52 tolerated(0.13) possibly_damaging(0.84) TCGA-GU-AATP-01 14 47426651 47426651 T A MDGA2 Missense_Mutation p.N672I 0.37 tolerated(0.33) benign(0.179) TCGA-GU-AATP-01 14 62187267 62187267 G C HIF1A Missense_Mutation p.R92P 0.12 deleterious(0) possibly_damaging(0.904) TCGA-GU-AATP-01 14 67805242 67805242 G T ATP6V1D 3'UTR 0.62 TCGA-GU-AATP-01 14 69256299 69256300 - TG ZFP36L1 Frame_Shift_Ins p.N323Tfs*21 0.21 TCGA-GU-AATP-01 14 94120130 94120130 C A UNC79 Missense_Mutation p.F1904L 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-GU-AATP-01 15 23019802 23019802 G C NIPA2 Nonsense_Mutation p.S65* 0.19 TCGA-GU-AATP-01 15 33928582 33928582 G A RYR3 Silent p.Q1129Q 0.19 TCGA-GU-AATP-01 15 40057905 40057905 G T FSIP1 Missense_Mutation p.A118D 0.22 deleterious(0) probably_damaging(1) TCGA-GU-AATP-01 15 40268949 40268949 C TGG EIF2AK4 Frame_Shift_Ins p.S718Lfs*74 0.38 TCGA-GU-AATP-01 15 40998452 40998452 G C RAD51 Intron 0.11 TCGA-GU-AATP-01 15 43705449 43705449 C A TP53BP1 Missense_Mutation p.G1725W 0.12 deleterious(0) probably_damaging(1) TCGA-GU-AATP-01 15 43831685 43831685 G T PPIP5K1 Missense_Mutation p.S1161Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-GU-AATP-01 15 49083544 49083544 G A CEP152 Nonsense_Mutation p.R288* 0.12 TCGA-GU-AATP-01 15 58838138 58838138 G C LIPC Missense_Mutation p.E258Q 0.32 tolerated(0.22) benign(0.056) TCGA-GU-AATP-01 15 59910783 59910783 G A GCNT3 Missense_Mutation p.E116K 0.33 tolerated(0.95) benign(0.001) TCGA-GU-AATP-01 15 63986511 63986511 C G HERC1 Missense_Mutation p.G1827A 0.47 benign(0.152) TCGA-GU-AATP-01 15 66629481 66629481 C T TIPIN Missense_Mutation p.E241K 0.09 tolerated(0.11) benign(0.02) TCGA-GU-AATP-01 15 71341840 71341840 G A LRRC49 Silent p.Q655Q 0.20 TCGA-GU-AATP-01 15 73580826 73580826 C A NEO1 Missense_Mutation p.Q1195K 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-GU-AATP-01 15 75983129 75983129 C T CSPG4 Missense_Mutation p.E93K 0.47 tolerated(0.05) benign(0.424) TCGA-GU-AATP-01 15 76019520 76019520 A G ODF3L1 Missense_Mutation p.N155S 0.33 tolerated(0.63) possibly_damaging(0.56) TCGA-GU-AATP-01 15 79606305 79606305 C T TMED3 Silent p.P125P 0.23 TCGA-GU-AATP-01 15 86287913 86287913 C T AKAP13 3'UTR 0.10 TCGA-GU-AATP-01 15 92706050 92706050 G T SLCO3A1 Silent p.T606T 0.28 TCGA-GU-AATP-01 16 19236069 19236069 C T SYT17 Silent p.F379F 0.29 TCGA-GU-AATP-01 16 2263919 2263919 C G PGP Missense_Mutation p.G259A 0.26 deleterious(0) probably_damaging(1) TCGA-GU-AATP-01 16 27556683 27556683 C T GTF3C1 Missense_Mutation p.R128K 0.10 deleterious(0.01) possibly_damaging(0.459) TCGA-GU-AATP-01 16 28989291 28989291 C T SPNS1 Missense_Mutation p.R124W 0.33 deleterious(0) probably_damaging(1) TCGA-GU-AATP-01 16 31012412 31012412 C G STX1B Intron 0.11 TCGA-GU-AATP-01 16 4557745 4557745 C G HMOX2 Nonsense_Mutation p.S79* 0.55 TCGA-GU-AATP-01 16 48256528 48256528 A T ABCC11 Missense_Mutation p.I253K 0.42 tolerated(0.33) benign(0.002) TCGA-GU-AATP-01 16 57693318 57693318 C T GPR56 Missense_Mutation p.P433L 0.13 tolerated(0.56) benign(0) TCGA-GU-AATP-01 16 66942324 66942324 C T CDH16 Missense_Mutation p.D821N 0.25 deleterious(0) possibly_damaging(0.896) TCGA-GU-AATP-01 16 68156314 68156314 C G NFATC3 Missense_Mutation p.F176L 0.11 tolerated(0.22) possibly_damaging(0.688) TCGA-GU-AATP-01 16 70012163 70012163 C G RP11-419C5.2 RNA 0.44 TCGA-GU-AATP-01 16 8952322 8952322 G A CARHSP1 Missense_Mutation p.R56W 0.17 deleterious(0) possibly_damaging(0.624) TCGA-GU-AATP-01 16 90095737 90095737 G A C16orf3 Missense_Mutation p.S5F 0.43 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-GU-AATP-01 17 15995180 15995180 C - NCOR1 Frame_Shift_Del p.E1005Kfs*10 0.15 TCGA-GU-AATP-01 17 29111178 29111178 G A CRLF3 3'UTR 0.35 TCGA-GU-AATP-01 17 34849778 34849778 G T ZNHIT3 Missense_Mutation p.D72Y 0.12 tolerated(1) possibly_damaging(0.534) TCGA-GU-AATP-01 17 35804846 35804846 G C TADA2A Missense_Mutation p.E194Q 0.10 deleterious(0.04) benign(0.051) TCGA-GU-AATP-01 17 3664376 3664376 G A ITGAE Missense_Mutation p.R177C 0.66 deleterious(0.03) possibly_damaging(0.855) TCGA-GU-AATP-01 17 3664784 3664784 G A ITGAE Missense_Mutation p.H116Y 0.71 tolerated(0.18) benign(0.002) TCGA-GU-AATP-01 17 36894838 36894838 C T PCGF2 Missense_Mutation p.E146K 0.46 tolerated(0.18) benign(0.003) TCGA-GU-AATP-01 17 38933144 38933144 C G KRT27 3'UTR 0.26 TCGA-GU-AATP-01 17 39135172 39135172 C T KRT40 Silent p.E360E 0.62 TCGA-GU-AATP-01 17 42930716 42930716 G A EFTUD2 Nonsense_Mutation p.Q837* 0.51 TCGA-GU-AATP-01 17 45786543 45786543 G A TBKBP1 Missense_Mutation p.E482K 0.69 tolerated(0.16) unknown(0) TCGA-GU-AATP-01 17 45786580 45786580 G A TBKBP1 Missense_Mutation p.S494N 0.60 tolerated(0.51) unknown(0) TCGA-GU-AATP-01 17 47297583 47297583 C G ABI3 Missense_Mutation p.P233A 0.57 tolerated(0.56) possibly_damaging(0.539) TCGA-GU-AATP-01 17 60493412 60493412 C T EFCAB3 Nonsense_Mutation p.R399* 0.57 TCGA-GU-AATP-01 17 61176545 61176545 C G TANC2 Missense_Mutation p.S50C 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-GU-AATP-01 17 7163624 7163624 C G CLDN7 3'UTR 0.41 TCGA-GU-AATP-01 17 7217397 7217397 A C GPS2 Splice_Site p.X133_splice 0.60 TCGA-GU-AATP-01 17 72248459 72248459 C G TTYH2 Silent p.L401L 0.32 TCGA-GU-AATP-01 17 72859253 72859253 G A FDXR Silent p.L473L 0.24 TCGA-GU-AATP-01 17 73519387 73519387 G C TSEN54 Missense_Mutation p.Q428H 0.23 deleterious(0.03) possibly_damaging(0.815) TCGA-GU-AATP-01 17 7578267 7578283 AAGATGCTGAGGAGGGG - TP53 Frame_Shift_Del p.A189Dfs*14 0.69 TCGA-GU-AATP-01 17 76168047 76168047 G C SYNGR2 3'UTR 0.22 TCGA-GU-AATP-01 17 78923268 78923268 G A RPTOR Silent p.K1097K 0.10 TCGA-GU-AATP-01 17 80051636 80051636 C G FASN Missense_Mutation p.D98H 0.22 tolerated(0.37) benign(0) TCGA-GU-AATP-01 18 43437885 43437885 C T EPG5 Missense_Mutation p.E2459K 0.64 deleterious(0) benign(0.111) TCGA-GU-AATP-01 18 45555753 45555753 C T ZBTB7C Missense_Mutation p.E580K 0.33 tolerated_low_confidence(0.06) benign(0.346) TCGA-GU-AATP-01 18 60625990 60625990 G A PHLPP1 Silent p.L1151L 0.40 TCGA-GU-AATP-01 19 1090945 1090945 G A POLR2E Silent p.L131L 0.17 TCGA-GU-AATP-01 19 10912999 10912999 C T DNM2 Silent p.I486I 0.47 TCGA-GU-AATP-01 19 11319642 11319642 T C DOCK6 Missense_Mutation p.Y1630C 0.32 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 19 13346484 13346484 G A CACNA1A Missense_Mutation p.L1671F 0.08 benign(0.227) TCGA-GU-AATP-01 19 14288474 14288474 G A LPHN1 Silent p.P51P 0.45 TCGA-GU-AATP-01 19 17403522 17403522 G A ABHD8 Missense_Mutation p.S423L 0.33 tolerated_low_confidence(0.22) unknown(0) TCGA-GU-AATP-01 19 17838435 17838435 C T MAP1S Missense_Mutation p.R748C 0.23 tolerated(0.13) probably_damaging(0.997) TCGA-GU-AATP-01 19 18729068 18729068 C T TMEM59L Silent p.L256L 0.20 TCGA-GU-AATP-01 19 1924122 1924122 C G SCAMP4 Missense_Mutation p.R177G 0.62 deleterious(0) probably_damaging(0.996) TCGA-GU-AATP-01 19 19609398 19609398 G A GATAD2A Silent p.E357E 0.22 TCGA-GU-AATP-01 19 19757026 19757026 C A ATP13A1 Missense_Mutation p.R1079L 0.61 tolerated(0.68) benign(0.011) TCGA-GU-AATP-01 19 19790110 19790110 C A ZNF101 Nonsense_Mutation p.C104* 0.45 TCGA-GU-AATP-01 19 22939106 22939106 A G ZNF99 3'Flank 0.30 TCGA-GU-AATP-01 19 23328897 23328897 C T ZNF730 Nonsense_Mutation p.R351* 0.21 TCGA-GU-AATP-01 19 30313232 30313232 C T CCNE1 Missense_Mutation p.S309L 0.32 deleterious(0) probably_damaging(0.974) TCGA-GU-AATP-01 19 3053784 3053784 C T AES 3'UTR 0.22 TCGA-GU-AATP-01 19 33703796 33703796 G A SLC7A10 Missense_Mutation p.P157S 0.36 deleterious(0.01) possibly_damaging(0.859) TCGA-GU-AATP-01 19 36207469 36207469 C T ZBTB32 Missense_Mutation p.P427S 0.35 deleterious(0) possibly_damaging(0.641) TCGA-GU-AATP-01 19 39214845 39214845 G A ACTN4 Missense_Mutation p.D581N 0.08 tolerated(0.27) benign(0.002) TCGA-GU-AATP-01 19 39214899 39214899 G A ACTN4 Missense_Mutation p.E599K 0.08 tolerated(0.3) benign(0.011) TCGA-GU-AATP-01 19 40367905 40367905 C T FCGBP Missense_Mutation p.C4352Y 0.25 probably_damaging(1) TCGA-GU-AATP-01 19 4318918 4318918 C T FSD1 Missense_Mutation p.R337C 0.38 deleterious(0) probably_damaging(0.997) TCGA-GU-AATP-01 19 44103387 44103387 C T ZNF576 Missense_Mutation p.R164W 0.24 tolerated(0.08) benign(0.042) TCGA-GU-AATP-01 19 44470087 44470087 C A ZNF221 Missense_Mutation p.Q145K 0.09 tolerated(0.05) benign(0.144) TCGA-GU-AATP-01 19 45315573 45315573 G A BCAM Missense_Mutation p.E120K 0.45 deleterious(0.01) probably_damaging(0.963) TCGA-GU-AATP-01 19 4538393 4538393 C G LRG1 Missense_Mutation p.E201D 0.26 tolerated(0.07) benign(0.139) TCGA-GU-AATP-01 19 48537545 48537545 C T CABP5 Silent p.R141R 0.35 TCGA-GU-AATP-01 19 48551600 48551600 C G PLA2G4C Nonstop_Mutation p.*552Yext*15 0.48 TCGA-GU-AATP-01 19 48714987 48714987 G A CARD8 Missense_Mutation p.L532F 0.34 deleterious(0) probably_damaging(0.981) TCGA-GU-AATP-01 19 49012219 49012219 A G LMTK3 Missense_Mutation p.L178P 0.07 probably_damaging(1) TCGA-GU-AATP-01 19 49318311 49318311 G A HSD17B14 Missense_Mutation p.P153S 0.35 tolerated(0.11) benign(0.339) TCGA-GU-AATP-01 19 50831754 50831754 C T KCNC3 Missense_Mutation p.E196K 0.23 tolerated(0.13) benign(0.222) TCGA-GU-AATP-01 19 50831808 50831808 C A KCNC3 Nonsense_Mutation p.E178* 0.19 TCGA-GU-AATP-01 19 50982320 50982320 C G EMC10 Silent p.L98L 0.25 TCGA-GU-AATP-01 19 51738485 51738486 TT A CD33 Frame_Shift_Del p.C274Vfs*8 0.32 TCGA-GU-AATP-01 19 53302742 53302742 G C ZNF28 3'UTR 0.33 TCGA-GU-AATP-01 19 54622010 54622010 G A PRPF31 Missense_Mutation p.E79K 0.36 tolerated(0.26) benign(0.009) TCGA-GU-AATP-01 19 54627966 54627966 C T PRPF31 Silent p.F262F 0.05 TCGA-GU-AATP-01 19 58005518 58005518 G C ZNF419 3'UTR 0.16 TCGA-GU-AATP-01 19 58232608 58232608 C T ZNF671 Silent p.Q282Q 0.33 TCGA-GU-AATP-01 19 58233695 58233695 C T ZNF671 Missense_Mutation p.G126E 0.32 tolerated(0.32) possibly_damaging(0.706) TCGA-GU-AATP-01 19 58233714 58233714 C T ZNF671 Missense_Mutation p.E120K 0.30 deleterious(0.02) benign(0.021) TCGA-GU-AATP-01 19 58238964 58238964 C T ZNF671 5'UTR 0.59 TCGA-GU-AATP-01 1 108735220 108735220 G C SLC25A24 Intron 0.29 TCGA-GU-AATP-01 1 11155874 11155874 C T EXOSC10 Missense_Mutation p.E105K 0.26 tolerated(0.06) benign(0.41) TCGA-GU-AATP-01 1 120301788 120301788 C T HMGCS2 Missense_Mutation p.R268Q 0.29 tolerated(0.42) benign(0.01) TCGA-GU-AATP-01 1 120437633 120437633 G A ADAM30 Missense_Mutation p.L443F 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-GU-AATP-01 1 12955520 12955520 C T PRAMEF10 Silent p.K53K 0.48 TCGA-GU-AATP-01 1 144857635 144857635 G A PDE4DIP Missense_Mutation p.T2140M 0.07 tolerated(0.08) benign(0.039) TCGA-GU-AATP-01 1 144873974 144873974 G A PDE4DIP Silent p.T1661T 0.05 TCGA-GU-AATP-01 1 149784905 149784905 C T HIST2H3D Missense_Mutation p.C111Y 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-AATP-01 1 150919449 150919449 G C SETDB1 Missense_Mutation p.E410Q 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-GU-AATP-01 1 152280457 152280457 G C FLG Nonsense_Mutation p.S2302* 0.29 TCGA-GU-AATP-01 1 152329280 152329280 C G FLG2 Missense_Mutation p.G328R 0.24 unknown(0) TCGA-GU-AATP-01 1 153730126 153730126 C T INTS3 Missense_Mutation p.R346C 0.31 deleterious(0) probably_damaging(0.998) TCGA-GU-AATP-01 1 153905988 153905988 G A DENND4B Missense_Mutation p.R1101W 0.24 deleterious(0) probably_damaging(0.993) TCGA-GU-AATP-01 1 154018770 154018770 T C NUP210L Missense_Mutation p.T1187A 0.46 tolerated(0.08) benign(0.047) TCGA-GU-AATP-01 1 155291878 155291878 C T RUSC1 Missense_Mutation p.S105L 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GU-AATP-01 1 155294665 155294665 C T RUSC1 Missense_Mutation p.P463S 0.25 tolerated(0.15) benign(0.037) TCGA-GU-AATP-01 1 155727116 155727116 T G GON4L Splice_Site p.X1752_splice 0.07 TCGA-GU-AATP-01 1 156756611 156756611 C G PRCC Missense_Mutation p.S243C 0.16 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 1 160313019 160313019 C T COPA 5'UTR 0.29 TCGA-GU-AATP-01 1 16535331 16535331 G A ARHGEF19 Silent p.L73L 0.26 TCGA-GU-AATP-01 1 170003630 170003630 G C KIFAP3 Missense_Mutation p.Q209E 0.15 tolerated(0.07) possibly_damaging(0.575) TCGA-GU-AATP-01 1 174274199 174274199 G C RABGAP1L Missense_Mutation p.E467Q 0.08 tolerated(0.15) benign(0.01) TCGA-GU-AATP-01 1 182638793 182638793 C G RGS8 Intron 0.31 TCGA-GU-AATP-01 1 183253136 183253136 C T NMNAT2 Missense_Mutation p.E190K 0.10 tolerated(0.13) benign(0.306) TCGA-GU-AATP-01 1 186281963 186281968 TCAGCT - PRG4 In_Frame_Del p.S1352_A1353del 0.18 TCGA-GU-AATP-01 1 200376414 200376414 G C ZNF281 Missense_Mutation p.S807C 0.05 deleterious(0.01) possibly_damaging(0.781) TCGA-GU-AATP-01 1 200880624 200880624 G A C1orf106 Missense_Mutation p.A335T 0.07 tolerated(0.29) benign(0.184) TCGA-GU-AATP-01 1 201079382 201079382 G A CACNA1S Silent p.I56I 0.10 TCGA-GU-AATP-01 1 201981563 201981565 TGG - ELF3 Splice_Site p.X160_splice 0.40 TCGA-GU-AATP-01 1 205797765 205797765 G A PM20D1 Missense_Mutation p.H498Y 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-GU-AATP-01 1 208200521 208200521 C G PLXNA2 3'UTR 0.09 TCGA-GU-AATP-01 1 22055168 22055168 C A USP48 Nonsense_Mutation p.E449* 0.24 TCGA-GU-AATP-01 1 22150834 22150834 G A HSPG2 Silent p.I4260I 0.24 TCGA-GU-AATP-01 1 22416560 22416560 C T CDC42 Intron 0.34 TCGA-GU-AATP-01 1 234367198 234367198 G A SLC35F3 Missense_Mutation p.E107K 0.24 tolerated(0.47) benign(0.167) TCGA-GU-AATP-01 1 234458935 234458935 G C SLC35F3 Silent p.L473L 0.23 TCGA-GU-AATP-01 1 241929556 241929556 G C WDR64 Missense_Mutation p.D652H 0.08 deleterious(0) probably_damaging(0.91) TCGA-GU-AATP-01 1 247614387 247614387 C G OR2B11 Missense_Mutation p.D300H 0.07 deleterious(0) benign(0.348) TCGA-GU-AATP-01 1 248112481 248112481 G C OR2L8 Missense_Mutation p.G108R 0.09 deleterious(0) possibly_damaging(0.835) TCGA-GU-AATP-01 1 26795534 26795534 G C DHDDS Missense_Mutation p.R306T 0.41 tolerated(0.55) benign(0) TCGA-GU-AATP-01 1 27623546 27623546 G C WDTC1 Missense_Mutation p.Q318H 0.25 deleterious(0.04) possibly_damaging(0.563) TCGA-GU-AATP-01 1 28165350 28165350 A C PPP1R8 Silent p.I86I 0.29 TCGA-GU-AATP-01 1 29069664 29069664 G C YTHDF2 Missense_Mutation p.Q294H 0.47 tolerated(0.15) benign(0.004) TCGA-GU-AATP-01 1 29070088 29070088 G C YTHDF2 Missense_Mutation p.E436Q 0.41 deleterious(0) possibly_damaging(0.859) TCGA-GU-AATP-01 1 32158705 32158705 C G COL16A1 Missense_Mutation p.E353D 0.17 unknown(0) TCGA-GU-AATP-01 1 38034699 38034699 G A GNL2 Nonsense_Mutation p.Q541* 0.49 TCGA-GU-AATP-01 1 44877715 44877715 T A RNF220 5'UTR 0.31 TCGA-GU-AATP-01 1 45813651 45813651 C T TESK2 Missense_Mutation p.E188K 0.26 tolerated(0.22) benign(0.278) TCGA-GU-AATP-01 1 46206708 46206708 C T IPP Missense_Mutation p.E197K 0.32 deleterious(0) probably_damaging(1) TCGA-GU-AATP-01 1 47398430 47398430 C T CYP4A11 Intron 0.31 TCGA-GU-AATP-01 1 47399666 47399666 C G CYP4A11 Missense_Mutation p.E392Q 0.44 tolerated(0.53) benign(0.021) TCGA-GU-AATP-01 1 47583635 47583635 G C CYP4Z1 3'UTR 0.27 TCGA-GU-AATP-01 1 8390570 8390570 G T SLC45A1 Silent p.S339S 0.19 TCGA-GU-AATP-01 1 97848006 97848006 A C DPYD Silent p.A639A 0.50 TCGA-GU-AATP-01 20 1532496 1532496 C G SIRPD Missense_Mutation p.E88Q 0.07 tolerated(0.15) benign(0.208) TCGA-GU-AATP-01 20 31436579 31436579 C A MAPRE1 3'UTR 0.46 TCGA-GU-AATP-01 20 33586603 33586603 G A MYH7B Missense_Mutation p.E1401K 0.36 probably_damaging(0.997) TCGA-GU-AATP-01 20 36631084 36631084 C T TTI1 Silent p.V866V 0.18 TCGA-GU-AATP-01 20 3726592 3726592 G C HSPA12B Missense_Mutation p.E197Q 0.32 tolerated(0.37) benign(0.039) TCGA-GU-AATP-01 20 42143791 42143791 C G L3MBTL1 Missense_Mutation p.F193L 0.44 tolerated(0.17) benign(0.096) TCGA-GU-AATP-01 20 46313304 46313304 C T SULF2 Silent p.A253A 0.10 TCGA-GU-AATP-01 20 51872073 51872073 C T TSHZ2 Silent p.I692I 0.21 TCGA-GU-AATP-01 20 51872205 51872205 C T TSHZ2 Silent p.V736V 0.18 TCGA-GU-AATP-01 20 58468607 58468607 C G SYCP2 Missense_Mutation p.K569N 0.09 deleterious(0.04) possibly_damaging(0.58) TCGA-GU-AATP-01 20 5935787 5935787 A G MCM8 Missense_Mutation p.K126E 0.37 tolerated(0.08) possibly_damaging(0.844) TCGA-GU-AATP-01 20 60893602 60893602 C T LAMA5 Missense_Mutation p.D2383N 0.12 benign(0.001) TCGA-GU-AATP-01 20 61919072 61919072 C T ARFGAP1 Silent p.T364T 0.38 TCGA-GU-AATP-01 21 18919367 18919367 C A CXADR Silent p.I22I 0.54 TCGA-GU-AATP-01 21 45497582 45497582 C T TRAPPC10 Silent p.S462S 0.23 TCGA-GU-AATP-01 21 45499917 45499917 C G TRAPPC10 Silent p.L544L 0.28 TCGA-GU-AATP-01 22 19707405 19707405 C G SEPT5 Silent p.L76L 0.34 TCGA-GU-AATP-01 22 19882961 19882961 C A TXNRD2 Silent p.T306T 0.28 TCGA-GU-AATP-01 22 20783846 20783846 G A SCARF2 Silent p.C467C 0.09 TCGA-GU-AATP-01 22 24939921 24939921 C T GUCD1 Missense_Mutation p.G173S 0.40 tolerated(0.06) benign(0.002) TCGA-GU-AATP-01 22 41531855 41531855 C T EP300 Nonsense_Mutation p.Q523* 0.29 TCGA-GU-AATP-01 2 128351144 128351144 G A MYO7B Missense_Mutation p.M723I 0.35 tolerated(0.35) possibly_damaging(0.524) TCGA-GU-AATP-01 2 141072590 141072590 C A LRP1B Missense_Mutation p.W4240L 0.09 benign(0.307) TCGA-GU-AATP-01 2 160303429 160303429 G C BAZ2B Missense_Mutation p.S187C 0.26 possibly_damaging(0.7) TCGA-GU-AATP-01 2 170011071 170011071 C G LRP2 Missense_Mutation p.R4065P 0.27 probably_damaging(0.947) TCGA-GU-AATP-01 2 182359504 182359504 C G ITGA4 Nonsense_Mutation p.S435* 0.33 TCGA-GU-AATP-01 2 187713872 187713872 G A ZSWIM2 5'UTR 0.19 TCGA-GU-AATP-01 2 189599178 189599178 T A DIRC1 3'UTR 0.27 TCGA-GU-AATP-01 2 189599179 189599179 G A DIRC1 3'UTR 0.27 TCGA-GU-AATP-01 2 189867023 189867023 G A COL3A1 Splice_Site p.X798_splice 0.48 TCGA-GU-AATP-01 2 190334822 190334822 G A WDR75 Missense_Mutation p.E614K 0.33 tolerated(0.1) probably_damaging(0.947) TCGA-GU-AATP-01 2 196728982 196728982 C A DNAH7 Missense_Mutation p.R2466L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-GU-AATP-01 2 202136277 202136277 C T CASP8 Missense_Mutation p.S174L 0.20 tolerated(0.23) benign(0.002) TCGA-GU-AATP-01 2 219374852 219374852 G A USP37 Missense_Mutation p.S292L 0.44 tolerated(0.23) benign(0) TCGA-GU-AATP-01 2 220285561 220285561 G A DES Silent p.L303L 0.25 TCGA-GU-AATP-01 2 237074994 237074994 C T GBX2 Missense_Mutation p.D204N 0.47 deleterious(0.04) probably_damaging(0.996) TCGA-GU-AATP-01 2 238267223 238267223 C G COL6A3 Missense_Mutation p.D2138H 0.27 possibly_damaging(0.894) TCGA-GU-AATP-01 2 241706709 241706709 G A KIF1A Silent p.L517L 0.41 TCGA-GU-AATP-01 2 242092934 242092934 G A PPP1R7 Silent p.G32G 0.42 TCGA-GU-AATP-01 2 24933875 24933875 G A NCOA1 Missense_Mutation p.E832K 0.18 tolerated(0.77) benign(0.002) TCGA-GU-AATP-01 2 24933960 24933960 G C NCOA1 Missense_Mutation p.R860T 0.14 tolerated(0.21) benign(0.125) TCGA-GU-AATP-01 2 26667762 26667762 C T DRC1 Nonsense_Mutation p.Q448* 0.23 TCGA-GU-AATP-01 2 27259456 27259456 G A TMEM214 Silent p.L274L 0.21 TCGA-GU-AATP-01 2 27672596 27672596 C G IFT172 Missense_Mutation p.W1374C 0.27 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 2 27672878 27672878 C G IFT172 Missense_Mutation p.G1346A 0.22 tolerated(0.17) benign(0.087) TCGA-GU-AATP-01 2 39213112 39213112 A C SOS1 Missense_Mutation p.H1285Q 0.40 tolerated_low_confidence(0.68) benign(0.012) TCGA-GU-AATP-01 2 43459849 43459849 C T THADA Intron 0.44 TCGA-GU-AATP-01 2 48808101 48808101 C T STON1-GTF2A1L Missense_Mutation p.S110L 0.18 deleterious(0.02) benign(0.004) TCGA-GU-AATP-01 2 71189919 71189919 C T ATP6V1B1 Silent p.I266I 0.15 TCGA-GU-AATP-01 2 71591275 71591275 C T ZNF638 Missense_Mutation p.S537F 0.30 deleterious(0) probably_damaging(0.998) TCGA-GU-AATP-01 3 101010336 101010336 C G IMPG2 Missense_Mutation p.E174Q 0.39 deleterious(0.02) benign(0.393) TCGA-GU-AATP-01 3 107097009 107097009 C T CCDC54 Missense_Mutation p.S192L 0.16 deleterious(0.05) possibly_damaging(0.891) TCGA-GU-AATP-01 3 108147692 108147692 C T MYH15 Missense_Mutation p.E1137K 0.27 deleterious(0.01) benign(0.136) TCGA-GU-AATP-01 3 119595286 119595286 G C GSK3B Missense_Mutation p.Q295E 0.18 deleterious(0.03) benign(0.004) TCGA-GU-AATP-01 3 121037357 121037362 GAACTT - STXBP5L In_Frame_Del p.L741_E742del 0.40 TCGA-GU-AATP-01 3 125651513 125651513 G A ALG1L Missense_Mutation p.S47F 0.16 tolerated(0.26) probably_damaging(0.942) TCGA-GU-AATP-01 3 130282123 130282123 C A COL6A6 Missense_Mutation p.N92K 0.22 tolerated(0.05) benign(0.345) TCGA-GU-AATP-01 3 130851629 130851629 C A NEK11 Missense_Mutation p.L166M 0.27 deleterious(0.04) probably_damaging(0.98) TCGA-GU-AATP-01 3 154032879 154032879 C G DHX36 Missense_Mutation p.D187H 0.19 deleterious(0) possibly_damaging(0.77) TCGA-GU-AATP-01 3 158539890 158539890 G A MFSD1 Missense_Mutation p.M395I 0.17 tolerated(0.77) benign(0.001) TCGA-GU-AATP-01 3 160942797 160942797 A T NMD3 Missense_Mutation p.I42F 0.06 deleterious(0) possibly_damaging(0.883) TCGA-GU-AATP-01 3 170723209 170723209 C G SLC2A2 Missense_Mutation p.M276I 0.52 deleterious(0.03) benign(0.068) TCGA-GU-AATP-01 3 184049082 184049082 G T EIF4G1 Missense_Mutation p.R1404L 0.19 deleterious(0) benign(0.019) TCGA-GU-AATP-01 3 194362864 194362864 C T LSG1 Nonsense_Mutation p.W637* 0.09 TCGA-GU-AATP-01 3 195492231 195492231 G A MUC4 Missense_Mutation p.R4570W 0.24 benign(0.008) TCGA-GU-AATP-01 3 195594568 195594568 C G TNK2 Missense_Mutation p.K930N 0.54 deleterious_low_confidence(0.01) benign(0.208) TCGA-GU-AATP-01 3 195595194 195595194 C T TNK2 Missense_Mutation p.D722N 0.37 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-GU-AATP-01 3 196386658 196386658 C A NRROS Silent p.L48L 0.40 TCGA-GU-AATP-01 3 33216542 33216542 G A SUSD5 Missense_Mutation p.S145L 0.32 deleterious(0.02) benign(0.141) TCGA-GU-AATP-01 3 37149616 37149616 G C LRRFIP2 Missense_Mutation p.S221C 0.12 deleterious(0) probably_damaging(0.968) TCGA-GU-AATP-01 3 38622661 38622661 C A SCN5A Missense_Mutation p.A997S 0.65 tolerated(0.66) benign(0.003) TCGA-GU-AATP-01 3 49200762 49200762 G A CCDC71 Missense_Mutation p.R294C 0.10 tolerated(0.21) unknown(0) TCGA-GU-AATP-01 3 51392445 51392445 G A DOCK3 Missense_Mutation p.D1414N 0.46 deleterious(0.01) benign(0.146) TCGA-GU-AATP-01 3 51993935 51993935 G A PCBP4 Silent p.R164R 0.18 TCGA-GU-AATP-01 3 57743490 57743490 C T SLMAP Nonsense_Mutation p.R38* 0.18 TCGA-GU-AATP-01 3 62535722 62535722 C T CADPS Missense_Mutation p.D608N 0.22 deleterious(0) benign(0.395) TCGA-GU-AATP-01 3 97634463 97634463 C T CRYBG3 Silent p.L760L 0.08 TCGA-GU-AATP-01 4 108935710 108935710 G A HADH Missense_Mutation p.E129K 0.36 tolerated(0.91) benign(0.007) TCGA-GU-AATP-01 4 120983232 120983232 G A MAD2L1 Missense_Mutation p.S80L 0.24 tolerated(0.09) benign(0.004) TCGA-GU-AATP-01 4 154702726 154702726 C T SFRP2 Silent p.A255A 0.28 TCGA-GU-AATP-01 4 155287443 155287443 C T DCHS2 Missense_Mutation p.D205N 0.44 deleterious(0) probably_damaging(0.996) TCGA-GU-AATP-01 4 173961165 173961165 G A GALNTL6 Missense_Mutation p.D574N 0.22 tolerated(0.53) benign(0.013) TCGA-GU-AATP-01 4 187542921 187542921 C A FAT1 Nonsense_Mutation p.G1607* 0.29 TCGA-GU-AATP-01 4 2932713 2932713 G A MFSD10 Intron 0.26 TCGA-GU-AATP-01 4 38051359 38051359 C T TBC1D1 Silent p.L584L 0.41 TCGA-GU-AATP-01 4 44624421 44624421 C T YIPF7 3'UTR 0.20 TCGA-GU-AATP-01 4 56757480 56757480 G C EXOC1 Splice_Site p.X514_splice 0.35 TCGA-GU-AATP-01 4 78079786 78079786 G T CCNG2 Missense_Mutation p.R34L 0.26 tolerated(0.1) possibly_damaging(0.728) TCGA-GU-AATP-01 4 86950420 86950420 G C MAPK10 Missense_Mutation p.I394M 0.26 deleterious(0.01) possibly_damaging(0.879) TCGA-GU-AATP-01 4 88344034 88344034 C T NUDT9 5'UTR 0.18 TCGA-GU-AATP-01 5 118503486 118503486 G C DMXL1 Missense_Mutation p.M1775I 0.32 tolerated(0.35) benign(0.026) TCGA-GU-AATP-01 5 134785149 134785149 C G TIFAB Missense_Mutation p.G161R 0.13 deleterious_low_confidence(0) unknown(0) TCGA-GU-AATP-01 5 139909073 139909073 C T ANKHD1 Missense_Mutation p.S2181L 0.30 benign(0.341) TCGA-GU-AATP-01 5 140168060 140168060 G A PCDHA1 Missense_Mutation p.E729K 0.19 deleterious_low_confidence(0.03) benign(0.029) TCGA-GU-AATP-01 5 140209543 140209543 C T PCDHA6 Missense_Mutation p.R623C 0.45 deleterious_low_confidence(0) benign(0.385) TCGA-GU-AATP-01 5 140531505 140531505 C G PCDHB6 Missense_Mutation p.S556W 0.26 deleterious(0) probably_damaging(0.968) TCGA-GU-AATP-01 5 140573365 140573365 A G PCDHB10 Missense_Mutation p.R414G 0.16 deleterious_low_confidence(0) benign(0.176) TCGA-GU-AATP-01 5 140799085 140799085 C T PCDHGB7 Silent p.G553G 0.28 TCGA-GU-AATP-01 5 141027612 141027612 C T FCHSD1 Missense_Mutation p.E210K 0.31 deleterious(0.01) possibly_damaging(0.786) TCGA-GU-AATP-01 5 37187901 37187901 G C C5orf42 Silent p.V1285V 0.18 TCGA-GU-AATP-01 6 107000080 107000080 A G AIM1 Missense_Mutation p.R1413G 0.13 tolerated(0.6) benign(0.223) TCGA-GU-AATP-01 6 108533427 108533427 G T SNX3 Missense_Mutation p.R139S 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-GU-AATP-01 6 117710631 117710631 G C ROS1 Missense_Mutation p.I547M 0.41 tolerated(0.06) benign(0.031) TCGA-GU-AATP-01 6 138559753 138559753 G A KIAA1244 Silent p.Q176Q 0.32 TCGA-GU-AATP-01 6 144783808 144783808 G C UTRN Missense_Mutation p.E958Q 0.29 tolerated(0.52) possibly_damaging(0.51) TCGA-GU-AATP-01 6 144783883 144783883 G C UTRN Missense_Mutation p.E983Q 0.39 tolerated(0.11) benign(0.04) TCGA-GU-AATP-01 6 155635549 155635549 C T TFB1M Missense_Mutation p.G5E 0.21 tolerated(0.26) benign(0.211) TCGA-GU-AATP-01 6 157431689 157431689 G A ARID1B Missense_Mutation p.E789K 0.46 possibly_damaging(0.539) TCGA-GU-AATP-01 6 157713869 157713869 G A TMEM242 3'UTR 0.36 TCGA-GU-AATP-01 6 159239243 159239243 C T EZR Intron 0.60 TCGA-GU-AATP-01 6 160468305 160468305 G A IGF2R Silent p.P722P 0.16 TCGA-GU-AATP-01 6 20846385 20846385 G A CDKAL1 Missense_Mutation p.D240N 0.28 tolerated(0.27) benign(0.005) TCGA-GU-AATP-01 6 24418733 24418733 G T MRS2 Missense_Mutation p.G345V 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-GU-AATP-01 6 26216733 26216733 T A HIST1H2BG Nonsense_Mutation p.K47* 0.20 TCGA-GU-AATP-01 6 27107381 27107381 C T HIST1H4I Silent p.L98L 0.22 TCGA-GU-AATP-01 6 27805892 27805892 T C HIST1H2AK Missense_Mutation p.K76E 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GU-AATP-01 6 27861503 27861503 C T HIST1H2BO Missense_Mutation p.S88L 0.39 deleterious_low_confidence(0.04) benign(0.099) TCGA-GU-AATP-01 6 29364885 29364885 C T OR12D2 Nonsense_Mutation p.Q137* 0.19 TCGA-GU-AATP-01 6 31116182 31116182 C T CCHCR1 Missense_Mutation p.S527N 0.13 deleterious(0.04) probably_damaging(0.928) TCGA-GU-AATP-01 6 31122377 31122377 C T CCHCR1 Missense_Mutation p.E233K 0.15 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 6 31122383 31122383 C T CCHCR1 Missense_Mutation p.E231K 0.14 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 6 31778777 31778777 C T HSPA1L Missense_Mutation p.D325N 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GU-AATP-01 6 31797453 31797453 G C HSPA1B Missense_Mutation p.E576Q 0.22 tolerated_low_confidence(0.1) benign(0.099) TCGA-GU-AATP-01 6 31860311 31860311 G A EHMT2 Missense_Mutation p.S246L 0.20 tolerated_low_confidence(0.12) benign(0.002) TCGA-GU-AATP-01 6 33156946 33156946 G C COL11A2 Missense_Mutation p.F84L 0.15 possibly_damaging(0.879) TCGA-GU-AATP-01 6 33372957 33372957 G C KIFC1 Missense_Mutation p.G362A 0.12 tolerated(0.15) benign(0.393) TCGA-GU-AATP-01 6 33543646 33543646 G A BAK1 Nonsense_Mutation p.Q44* 0.27 TCGA-GU-AATP-01 6 33638553 33638553 G A ITPR3 Silent p.V849V 0.20 TCGA-GU-AATP-01 6 35392459 35392459 C T PPARD Silent p.I327I 0.48 TCGA-GU-AATP-01 6 35443797 35443797 C T TEAD3 Missense_Mutation p.D267N 0.32 deleterious(0) probably_damaging(0.992) TCGA-GU-AATP-01 6 35610601 35610601 T C FKBP5 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.995) TCGA-GU-AATP-01 6 36196781 36196781 G A BRPF3 Missense_Mutation p.E1128K 0.26 tolerated(0.46) probably_damaging(0.997) TCGA-GU-AATP-01 6 42935166 42935166 G C PEX6 Silent p.L608L 0.24 TCGA-GU-AATP-01 6 46216493 46216493 G A RCAN2 Silent p.F122F 0.18 TCGA-GU-AATP-01 6 51523771 51523771 G A PKHD1 Missense_Mutation p.S3718L 0.28 tolerated(0.09) benign(0.015) TCGA-GU-AATP-01 6 87994304 87994304 G C GJB7 Silent p.L109L 0.43 TCGA-GU-AATP-01 7 100151029 100151029 C T AGFG2 Missense_Mutation p.P164L 0.06 deleterious(0.04) benign(0.016) TCGA-GU-AATP-01 7 100151721 100151721 C T AGFG2 Silent p.V197V 0.07 TCGA-GU-AATP-01 7 100679927 100679927 C T MUC17 Missense_Mutation p.P1744S 0.07 possibly_damaging(0.884) TCGA-GU-AATP-01 7 121674148 121674148 G C PTPRZ1 Splice_Site p.X1723_splice 0.27 TCGA-GU-AATP-01 7 135099985 135099985 C T CNOT4 Silent p.G133G 0.33 TCGA-GU-AATP-01 7 143016946 143016946 G A CLCN1 Silent p.E93E 0.29 TCGA-GU-AATP-01 7 143632955 143632955 T C OR2F2 Silent p.P210P 0.10 TCGA-GU-AATP-01 7 151849976 151849976 C T KMT2C Missense_Mutation p.E4114K 0.36 probably_damaging(0.995) TCGA-GU-AATP-01 7 1527585 1527585 G A INTS1 Missense_Mutation p.S776F 0.52 deleterious(0.01) possibly_damaging(0.615) TCGA-GU-AATP-01 7 20691144 20691144 C G ABCB5 Missense_Mutation p.I478M 0.50 deleterious(0) probably_damaging(0.997) TCGA-GU-AATP-01 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.20 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-GU-AATP-01 7 57509974 57509974 C A ZNF716 5'UTR 0.40 TCGA-GU-AATP-01 7 6731481 6731481 C T ZNF12 Silent p.Q364Q 0.10 TCGA-GU-AATP-01 7 74160221 74160221 G A GTF2I Splice_Site p.X645_splice 0.15 TCGA-GU-AATP-01 7 79833069 79833069 C T GNAI1 Nonsense_Mutation p.Q171* 0.24 TCGA-GU-AATP-01 7 98998030 98998030 A G PDAP1 Silent p.V77V 0.03 TCGA-GU-AATP-01 8 101117671 101117671 G A RGS22 Intron 0.25 TCGA-GU-AATP-01 8 10467923 10467923 C T RP1L1 Missense_Mutation p.E1229K 0.32 possibly_damaging(0.811) TCGA-GU-AATP-01 8 113246662 113246662 G A CSMD3 Missense_Mutation p.L3558F 0.35 deleterious(0.03) benign(0.001) TCGA-GU-AATP-01 8 124238725 124238725 G A ZHX1-C8ORF76 Silent p.L289L 0.31 TCGA-GU-AATP-01 8 139160921 139160921 T - FAM135B Frame_Shift_Del p.Q1097Rfs*10 0.28 TCGA-GU-AATP-01 8 143999219 143999219 G T CYP11B2 Missense_Mutation p.A13E 0.21 tolerated(0.08) benign(0.1) TCGA-GU-AATP-01 8 144733319 144733319 C T ZNF623 Missense_Mutation p.S426F 0.38 deleterious(0) possibly_damaging(0.609) TCGA-GU-AATP-01 8 144898988 144898988 G C PUF60 Missense_Mutation p.S461C 0.44 deleterious(0.04) possibly_damaging(0.583) TCGA-GU-AATP-01 8 145622980 145622980 C T CPSF1 Missense_Mutation p.E730K 0.10 tolerated(0.46) benign(0.029) TCGA-GU-AATP-01 8 146157801 146157801 C T ZNF16 Silent p.R124R 0.23 TCGA-GU-AATP-01 8 32621853 32621853 C A NRG1 Nonsense_Mutation p.S624* 0.19 TCGA-GU-AATP-01 8 59404161 59404161 G C CYP7A1 Missense_Mutation p.S463C 0.09 tolerated(0.2) benign(0.029) TCGA-GU-AATP-01 8 67771704 67771704 A G SGK3 Missense_Mutation p.Y460C 0.32 tolerated(0.05) benign(0.01) TCGA-GU-AATP-01 8 68536464 68536464 G C CPA6 Missense_Mutation p.P47A 0.21 deleterious(0.03) probably_damaging(0.948) TCGA-GU-AATP-01 8 80553752 80553752 G A STMN2 Silent p.Q85Q 0.25 TCGA-GU-AATP-01 9 101611249 101611249 C T GALNT12 Missense_Mutation p.H541Y 0.76 deleterious(0.05) probably_damaging(0.999) TCGA-GU-AATP-01 9 113530265 113530265 G C MUSK Silent p.V362V 0.66 TCGA-GU-AATP-01 9 117804556 117804556 C T TNC Nonsense_Mutation p.W1730* 0.56 TCGA-GU-AATP-01 9 117840411 117840411 C T TNC Missense_Mutation p.E829K 0.76 tolerated(0.07) probably_damaging(0.95) TCGA-GU-AATP-01 9 125681329 125681329 G C ZBTB26 Missense_Mutation p.H295Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-GU-AATP-01 9 127118983 127118983 G A PSMB7 Intron 0.57 TCGA-GU-AATP-01 9 135786887 135786887 G A TSC1 Nonsense_Mutation p.Q328* 0.61 TCGA-GU-AATP-01 9 32633525 32633525 G A TAF1L Missense_Mutation p.R685C 0.28 deleterious(0) probably_damaging(0.995) TCGA-GU-AATP-01 9 98270508 98270508 C T PTCH1 Missense_Mutation p.D46N 0.57 tolerated(0.21) benign(0.261) TCGA-GU-AATP-01 X 10109597 10109597 C T WWC3 3'UTR 0.82 TCGA-GU-AATP-01 X 129518815 129518815 C T GPR119 Missense_Mutation p.E203K 0.69 tolerated(0.14) benign(0.411) TCGA-GU-AATP-01 X 133963290 133963290 G C FAM122C Missense_Mutation p.S75T 0.20 tolerated(0.1) benign(0.139) TCGA-GU-AATP-01 X 152914706 152914706 G A DUSP9 Silent p.Q131Q 0.63 TCGA-GU-AATP-01 X 153047051 153047051 G C SRPK3 Missense_Mutation p.W94C 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-GU-AATP-01 X 19443801 19443801 C T MAP3K15 Silent p.R429R 0.95 TCGA-GU-AATP-01 X 44938405 44938405 T C KDM6A Missense_Mutation p.S985P 0.85 deleterious(0) probably_damaging(0.993) TCGA-GU-AATP-01 X 47979502 47979502 C T SSX6 RNA 0.71 TCGA-GU-AATP-01 X 47979503 47979503 C A SSX6 RNA 0.69 TCGA-GU-AATP-01 X 49597171 49597171 G C PAGE4 Missense_Mutation p.K70N 0.07 tolerated(0.11) benign(0.01) TCGA-GU-AATP-01 X 73071582 73071582 A G XIST RNA 0.33 TCGA-GU-AATQ-01 10 11259437 11259437 G A CELF2 Silent p.Q107Q 0.15 TCGA-GU-AATQ-01 10 26355924 26355924 A C MYO3A Missense_Mutation p.K325T 0.12 deleterious(0.02) possibly_damaging(0.707) TCGA-GU-AATQ-01 10 28233160 28233160 G A ARMC4 Silent p.I578I 0.35 TCGA-GU-AATQ-01 10 38654399 38654399 A T HSD17B7P2 RNA 0.30 TCGA-GU-AATQ-01 10 60128530 60128530 C G UBE2D1 3'UTR 0.24 TCGA-GU-AATQ-01 10 88854364 88854364 C G GLUD1 Missense_Mutation p.E55Q 0.74 tolerated(0.42) benign(0.005) TCGA-GU-AATQ-01 11 105781203 105781203 G A GRIA4 Missense_Mutation p.D401N 0.37 tolerated(0.52) benign(0.002) TCGA-GU-AATQ-01 11 125237800 125237800 C G PKNOX2 Nonsense_Mutation p.S49* 0.21 TCGA-GU-AATQ-01 11 125617635 125617635 C T PATE1 Silent p.F55F 0.18 TCGA-GU-AATQ-01 11 34156767 34156767 G A NAT10 Missense_Mutation p.E653K 0.25 deleterious(0.04) benign(0.034) TCGA-GU-AATQ-01 11 34158254 34158254 G C NAT10 Missense_Mutation p.L698F 0.31 deleterious(0.01) possibly_damaging(0.786) TCGA-GU-AATQ-01 11 55433506 55433506 G A OR4C6 Silent p.R288R 0.45 TCGA-GU-AATQ-01 11 60906296 60906296 C G VPS37C Missense_Mutation p.E2D 0.45 tolerated(0.26) benign(0.048) TCGA-GU-AATQ-01 11 64900694 64900694 G C SYVN1 Silent p.V54V 0.30 TCGA-GU-AATQ-01 11 66190406 66190406 C A NPAS4 Missense_Mutation p.S231Y 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-GU-AATQ-01 11 73020517 73020517 C G ARHGEF17 Missense_Mutation p.D278E 0.19 tolerated_low_confidence(0.57) benign(0.001) TCGA-GU-AATQ-01 11 75431183 75431183 T C MOGAT2 Missense_Mutation p.W80R 0.52 deleterious(0) probably_damaging(0.997) TCGA-GU-AATQ-01 11 788458 788458 G A CEND1 Missense_Mutation p.S40L 0.51 tolerated_low_confidence(0.24) benign(0.008) TCGA-GU-AATQ-01 11 9430103 9430103 C G IPO7 Silent p.S79S 0.06 TCGA-GU-AATQ-01 12 100732997 100732997 G T SCYL2 3'UTR 0.24 TCGA-GU-AATQ-01 12 103234220 103234220 C T PAH Missense_Mutation p.D425N 0.20 tolerated(0.19) benign(0.061) TCGA-GU-AATQ-01 12 105385495 105385495 G C C12orf45 Missense_Mutation p.D70H 0.19 deleterious(0) probably_damaging(0.971) TCGA-GU-AATQ-01 12 21453442 21453442 C T SLCO1A2 Silent p.L250L 0.35 TCGA-GU-AATQ-01 12 26377228 26377228 C G SSPN Silent p.V94V 0.38 TCGA-GU-AATQ-01 12 31944993 31944993 C T H3F3C Silent p.V36V 0.25 TCGA-GU-AATQ-01 12 45209869 45209869 G C NELL2 Missense_Mutation p.Q129E 0.45 tolerated(0.1) benign(0.212) TCGA-GU-AATQ-01 12 50059683 50059683 C T FMNL3 Silent p.R100R 0.17 TCGA-GU-AATQ-01 12 53009994 53009994 C T KRT73 Silent p.S206S 0.52 TCGA-GU-AATQ-01 12 53086605 53086605 C T KRT77 Missense_Mutation p.M380I 0.16 tolerated(0.21) benign(0.084) TCGA-GU-AATQ-01 12 54063049 54063049 G C ATP5G2 Nonsense_Mutation p.S122* 0.42 TCGA-GU-AATQ-01 12 54063120 54063120 G C ATP5G2 Silent p.L98L 0.50 TCGA-GU-AATQ-01 12 56994094 56994094 C T BAZ2A Missense_Mutation p.V1597I 0.46 tolerated(1) possibly_damaging(0.632) TCGA-GU-AATQ-01 12 57389569 57389569 C T GPR182 Silent p.I192I 0.38 TCGA-GU-AATQ-01 12 6647115 6647115 T C GAPDH Silent p.A297A 0.18 TCGA-GU-AATQ-01 12 6647116 6647116 G T GAPDH Missense_Mutation p.G298W 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GU-AATQ-01 12 665977 665977 C A B4GALNT3 Nonsense_Mutation p.C775* 0.33 TCGA-GU-AATQ-01 12 66839277 66839277 A G GRIP1 Missense_Mutation p.S404P 0.23 deleterious(0) benign(0.363) TCGA-GU-AATQ-01 12 72956705 72956705 C G TRHDE Missense_Mutation p.P598A 0.31 deleterious(0) probably_damaging(0.999) TCGA-GU-AATQ-01 12 75434838 75434838 G C KCNC2 3'UTR 0.23 TCGA-GU-AATQ-01 13 32863787 32863787 G C FRY Missense_Mutation p.Q2829H 0.23 tolerated(0.06) possibly_damaging(0.862) TCGA-GU-AATQ-01 13 32973009 32973009 G C BRCA2 3'UTR 0.38 TCGA-GU-AATQ-01 13 51952496 51952496 G A INTS6 Missense_Mutation p.S494L 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-GU-AATQ-01 13 97639921 97639921 G C OXGR1 Silent p.L31L 0.33 TCGA-GU-AATQ-01 14 101531679 101531679 C A MIR409 RNA 0.41 TCGA-GU-AATQ-01 14 105350343 105350343 C T CEP170B Silent p.F409F 0.23 TCGA-GU-AATQ-01 14 28734173 28734173 C T BNIP3P1 RNA 0.34 TCGA-GU-AATQ-01 14 68234426 68234426 C T ZFYVE26 Missense_Mutation p.E1929K 0.48 deleterious(0) probably_damaging(0.994) TCGA-GU-AATQ-01 14 94914469 94914469 C G SERPINA11 Missense_Mutation p.A215P 0.41 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 15 100695407 100695407 C G ADAMTS17 Missense_Mutation p.D434H 0.17 deleterious(0) probably_damaging(0.941) TCGA-GU-AATQ-01 15 101718308 101718308 A G CHSY1 Missense_Mutation p.V565A 0.33 deleterious(0.02) benign(0.431) TCGA-GU-AATQ-01 15 35046680 35046680 A T GJD2 Missense_Mutation p.W4R 0.38 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 15 44066930 44066930 C G ELL3 Missense_Mutation p.K229N 0.58 deleterious(0) probably_damaging(0.996) TCGA-GU-AATQ-01 15 56680668 56680668 A G TEX9 Splice_Site p.X88_splice 0.42 TCGA-GU-AATQ-01 15 74468462 74468462 C T ISLR Silent p.L421L 0.27 TCGA-GU-AATQ-01 16 11370074 11370074 G T PRM2 Missense_Mutation p.H52N 0.24 tolerated_low_confidence(0.13) unknown(0) TCGA-GU-AATQ-01 16 21049282 21049282 G A DNAH3 Missense_Mutation p.A1584V 0.45 deleterious(0.03) probably_damaging(0.989) TCGA-GU-AATQ-01 16 29994567 29994567 G A TAOK2 Missense_Mutation p.E392K 0.24 tolerated_low_confidence(0.05) benign(0.225) TCGA-GU-AATQ-01 16 48212557 48212557 T G ABCC11 Missense_Mutation p.E1100A 0.21 deleterious(0) probably_damaging(0.968) TCGA-GU-AATQ-01 16 67305026 67305026 C A SLC9A5 Silent p.L868L 0.16 TCGA-GU-AATQ-01 16 68712464 68712464 G C CDH3 Missense_Mutation p.D151H 0.24 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 16 824485 824485 G A MSLNL Silent p.L586L 0.30 TCGA-GU-AATQ-01 17 40574810 40574810 G A PTRF Silent p.T102T 0.47 TCGA-GU-AATQ-01 17 41243920 41243920 C G BRCA1 Missense_Mutation p.E1210Q 0.59 tolerated(0.15) possibly_damaging(0.773) TCGA-GU-AATQ-01 17 42463198 42463198 G C ITGA2B Silent p.V134V 0.33 TCGA-GU-AATQ-01 17 48549906 48549906 G A ACSF2 Missense_Mutation p.E481K 0.34 deleterious(0.04) probably_damaging(0.986) TCGA-GU-AATQ-01 17 56389492 56389492 G A BZRAP1 Missense_Mutation p.S897F 0.52 deleterious(0) probably_damaging(0.997) TCGA-GU-AATQ-01 17 65733791 65733791 G A NOL11 Silent p.T462T 0.46 TCGA-GU-AATQ-01 17 7612919 7612919 G A EFNB3 3'UTR 0.90 TCGA-GU-AATQ-01 18 2673327 2673327 C T SMCHD1 Missense_Mutation p.R158C 0.40 deleterious(0.02) benign(0.011) TCGA-GU-AATQ-01 18 29041194 29041194 C T DSG3 Missense_Mutation p.S273L 0.55 deleterious(0.01) benign(0.026) TCGA-GU-AATQ-01 18 29121247 29121247 G A DSG2 Nonsense_Mutation p.W657* 0.29 TCGA-GU-AATQ-01 19 10670091 10670091 C T KRI1 Missense_Mutation p.E386K 0.46 tolerated(0.45) benign(0.117) TCGA-GU-AATQ-01 19 13616859 13616859 T C CACNA1A Silent p.A60A 0.12 TCGA-GU-AATQ-01 19 14040216 14040216 C G CC2D1A Silent p.L848L 0.26 TCGA-GU-AATQ-01 19 17394285 17394285 C G ANKLE1 Missense_Mutation p.P238A 0.39 tolerated(0.6) benign(0.001) TCGA-GU-AATQ-01 19 19004331 19004331 C G CERS1 Missense_Mutation p.E101D 0.44 deleterious(0) probably_damaging(0.991) TCGA-GU-AATQ-01 19 2434297 2434297 C G LMNB2 Missense_Mutation p.E400Q 0.19 tolerated(0.34) possibly_damaging(0.779) TCGA-GU-AATQ-01 19 36278684 36278684 C G ARHGAP33 Missense_Mutation p.L912V 0.45 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-GU-AATQ-01 19 36278925 36278925 C G ARHGAP33 Nonsense_Mutation p.S992* 0.39 TCGA-GU-AATQ-01 19 36279027 36279027 C G ARHGAP33 Missense_Mutation p.S1026C 0.50 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GU-AATQ-01 19 36365562 36365562 C G APLP1 Missense_Mutation p.Q405E 0.32 deleterious(0) probably_damaging(0.955) TCGA-GU-AATQ-01 19 44419125 44419125 G A ZNF45 Missense_Mutation p.H155Y 0.05 tolerated(0.6) benign(0.001) TCGA-GU-AATQ-01 19 44793183 44793183 C T ZNF235 Silent p.K135K 0.34 TCGA-GU-AATQ-01 19 46124545 46124545 C T EML2 Missense_Mutation p.G549R 0.51 deleterious(0.01) possibly_damaging(0.897) TCGA-GU-AATQ-01 19 52497492 52497492 C G ZNF615 Missense_Mutation p.Q290H 0.18 deleterious(0.03) benign(0.002) TCGA-GU-AATQ-01 19 53959890 53959890 G C ZNF761 RNA 0.51 TCGA-GU-AATQ-01 19 54606180 54606180 G C NDUFA3 5'UTR 0.42 TCGA-GU-AATQ-01 19 55777590 55777590 C G HSPBP1 Missense_Mutation p.L235F 0.67 deleterious(0.04) benign(0.053) TCGA-GU-AATQ-01 1 114269116 114269116 T G PHTF1 Missense_Mutation p.M138L 0.19 tolerated(1) benign(0.028) TCGA-GU-AATQ-01 1 11576214 11576214 C T PTCHD2 Missense_Mutation p.S582F 0.20 deleterious(0) probably_damaging(0.999) TCGA-GU-AATQ-01 1 118426240 118426240 A T GDAP2 Missense_Mutation p.Y373N 0.53 deleterious(0) probably_damaging(0.999) TCGA-GU-AATQ-01 1 120480577 120480577 C G NOTCH2 Missense_Mutation p.Q1080H 0.05 deleterious(0.03) possibly_damaging(0.613) TCGA-GU-AATQ-01 1 14105376 14105376 T C PRDM2 Silent p.C362C 0.51 TCGA-GU-AATQ-01 1 145039675 145039675 G A RN7SKP88 5'Flank 0.16 TCGA-GU-AATQ-01 1 151110850 151110850 C G SEMA6C Silent p.L163L 0.69 TCGA-GU-AATQ-01 1 151681720 151681720 G A CELF3 Missense_Mutation p.R128W 0.28 deleterious(0) probably_damaging(0.992) TCGA-GU-AATQ-01 1 156438615 156438615 G A MEF2D Nonsense_Mutation p.Q402* 0.35 TCGA-GU-AATQ-01 1 167674029 167674029 G C RCSD1 3'UTR 0.32 TCGA-GU-AATQ-01 1 177906504 177906504 T C SEC16B Missense_Mutation p.Y783C 0.72 tolerated(0.15) benign(0.01) TCGA-GU-AATQ-01 1 1849290 1849290 C G TMEM52 3'UTR 0.33 TCGA-GU-AATQ-01 1 200017590 200017590 C T NR5A2 Missense_Mutation p.H252Y 0.54 tolerated(0.18) benign(0.002) TCGA-GU-AATQ-01 1 204950942 204950942 C G NFASC Missense_Mutation p.S755W 0.28 deleterious(0) probably_damaging(0.99) TCGA-GU-AATQ-01 1 215793907 215793907 C G KCTD3 Missense_Mutation p.P799A 0.55 tolerated_low_confidence(0.56) benign(0.002) TCGA-GU-AATQ-01 1 216737707 216737707 G C ESRRG Nonsense_Mutation p.S251* 0.15 TCGA-GU-AATQ-01 1 228247918 228247918 A G WNT3A 3'UTR 0.19 TCGA-GU-AATQ-01 1 229625748 229625748 G C NUP133 Nonsense_Mutation p.S383* 0.17 TCGA-GU-AATQ-01 1 236389965 236389965 C T ERO1LB Missense_Mutation p.A263T 0.44 deleterious(0.01) possibly_damaging(0.647) TCGA-GU-AATQ-01 1 240969620 240969620 C T RGS7 Nonsense_Mutation p.W363* 0.40 TCGA-GU-AATQ-01 1 247751785 247751785 A G OR2G2 Missense_Mutation p.I42V 0.52 tolerated(0.1) benign(0.02) TCGA-GU-AATQ-01 1 34011801 34011801 C A CSMD2 Missense_Mutation p.C2835F 0.28 deleterious(0) probably_damaging(0.987) TCGA-GU-AATQ-01 1 54520056 54520056 C T TCEANC2 Intron 0.31 TCGA-GU-AATQ-01 1 59248409 59248409 C T JUN Missense_Mutation p.E112K 0.51 deleterious(0.01) probably_damaging(0.969) TCGA-GU-AATQ-01 20 36668883 36668883 C T RPRD1B Silent p.V66V 0.53 TCGA-GU-AATQ-01 20 40730770 40730770 C T PTPRT Silent p.L1236L 0.46 TCGA-GU-AATQ-01 20 44582456 44582456 C T ZNF335 Silent p.E858E 0.23 TCGA-GU-AATQ-01 20 57273808 57273808 G A NPEPL1 Missense_Mutation p.M192I 0.16 deleterious(0.01) possibly_damaging(0.673) TCGA-GU-AATQ-01 21 27264076 27264076 C A APP Silent p.L723L 0.51 TCGA-GU-AATQ-01 21 30971167 30971167 C G GRIK1 Missense_Mutation p.E397Q 0.55 tolerated(0.33) possibly_damaging(0.849) TCGA-GU-AATQ-01 21 35147066 35147066 C G ITSN1 Missense_Mutation p.L447V 0.08 tolerated(0.05) unknown(0) TCGA-GU-AATQ-01 22 16266933 16266933 G A POTEH Missense_Mutation p.H506Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.882) TCGA-GU-AATQ-01 22 19419031 19419031 G A HIRA 5'UTR 0.21 TCGA-GU-AATQ-01 22 37211163 37211163 C G PVALB Missense_Mutation p.E60Q 0.74 deleterious(0.01) probably_damaging(1) TCGA-GU-AATQ-01 22 38212328 38212328 G A GCAT Missense_Mutation p.G396S 0.21 deleterious(0) probably_damaging(0.973) TCGA-GU-AATQ-01 22 43287141 43287141 C A PACSIN2 Nonsense_Mutation p.E89* 0.26 TCGA-GU-AATQ-01 22 44385138 44385138 G A SAMM50 Splice_Site p.X408_splice 0.41 TCGA-GU-AATQ-01 2 102632388 102632388 G A IL1R2 Missense_Mutation p.D130N 0.27 tolerated(0.09) benign(0.005) TCGA-GU-AATQ-01 2 128394410 128394410 G C MYO7B Missense_Mutation p.W2057C 0.30 deleterious(0) probably_damaging(0.999) TCGA-GU-AATQ-01 2 130918826 130918826 C T SMPD4 Missense_Mutation p.R334Q 0.44 deleterious(0.03) possibly_damaging(0.776) TCGA-GU-AATQ-01 2 133542000 133542000 T C NCKAP5 Missense_Mutation p.Y795C 0.39 tolerated(0.18) benign(0.013) TCGA-GU-AATQ-01 2 1638072 1638072 C A PXDN Silent p.V1448V 0.38 TCGA-GU-AATQ-01 2 168100794 168100794 T G XIRP2 Missense_Mutation p.H964Q 0.32 benign(0.2) TCGA-GU-AATQ-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.72 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 2 179428167 179428167 C A TTN Silent p.A27564A 0.81 TCGA-GU-AATQ-01 2 233346255 233346255 G A ECEL1 Silent p.I650I 0.60 TCGA-GU-AATQ-01 2 238688092 238688092 G C LRRFIP1 Missense_Mutation p.E614Q 0.47 deleterious(0) possibly_damaging(0.682) TCGA-GU-AATQ-01 2 29543668 29543668 G T ALK Missense_Mutation p.P499T 0.50 tolerated(0.36) benign(0.006) TCGA-GU-AATQ-01 2 32449685 32449685 G A NLRC4 Silent p.L978L 0.15 TCGA-GU-AATQ-01 2 64109639 64109639 G C UGP2 Missense_Mutation p.D99H 0.45 deleterious(0.01) benign(0.021) TCGA-GU-AATQ-01 2 98744736 98744736 T C VWA3B Missense_Mutation p.V246A 0.13 deleterious(0.01) possibly_damaging(0.593) TCGA-GU-AATQ-01 3 118870142 118870142 T C C3orf30 3'UTR 0.34 TCGA-GU-AATQ-01 3 121413713 121413713 T C GOLGB1 Missense_Mutation p.D1886G 0.29 possibly_damaging(0.697) TCGA-GU-AATQ-01 3 129196909 129196909 C T IFT122 Nonsense_Mutation p.R451* 0.17 TCGA-GU-AATQ-01 3 131068640 131068640 A C NEK11 3'UTR 0.25 TCGA-GU-AATQ-01 3 132378620 132378620 C T UBA5 5'UTR 0.28 TCGA-GU-AATQ-01 3 134898754 134898754 C T EPHB1 Silent p.N604N 0.29 TCGA-GU-AATQ-01 3 137880904 137880904 C G DBR1 Missense_Mutation p.D488H 0.17 tolerated(0.05) benign(0.235) TCGA-GU-AATQ-01 3 150916872 150916872 G C GPR171 Nonsense_Mutation p.S101* 0.24 TCGA-GU-AATQ-01 3 172480511 172480511 G C ECT2 Missense_Mutation p.R307T 0.49 tolerated(0.16) benign(0.278) TCGA-GU-AATQ-01 3 172480757 172480757 G A ECT2 Missense_Mutation p.E355K 0.46 tolerated(0.23) probably_damaging(0.995) TCGA-GU-AATQ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.42 deleterious(0.02) probably_damaging(0.959) TCGA-GU-AATQ-01 3 178984454 178984454 G C KCNMB3 Missense_Mutation p.S15R 0.12 tolerated(0.06) benign(0.391) TCGA-GU-AATQ-01 3 183823157 183823157 G C HTR3E Missense_Mutation p.S247T 0.26 tolerated(0.6) benign(0.002) TCGA-GU-AATQ-01 3 189706765 189706765 C G LEPREL1 Missense_Mutation p.G296R 0.47 deleterious(0) probably_damaging(0.98) TCGA-GU-AATQ-01 3 194080555 194080555 G C LRRC15 Silent p.L412L 0.10 TCGA-GU-AATQ-01 3 194118712 194118712 C T GP5 Silent p.L100L 0.30 TCGA-GU-AATQ-01 3 2777958 2777958 T C CNTN4 Silent p.L39L 0.19 TCGA-GU-AATQ-01 3 38240221 38240221 C T OXSR1 Silent p.L101L 0.83 TCGA-GU-AATQ-01 3 38240301 38240301 C G OXSR1 Silent p.L127L 0.69 TCGA-GU-AATQ-01 3 45812855 45812855 G A SLC6A20 Silent p.A263A 0.72 TCGA-GU-AATQ-01 3 48668456 48668456 C G SLC26A6 Silent p.L368L 0.85 TCGA-GU-AATQ-01 3 58639452 58639452 G C FAM3D Missense_Mutation p.R24G 0.67 tolerated(0.07) benign(0.246) TCGA-GU-AATQ-01 4 100530103 100530103 C G MTTP Missense_Mutation p.Q580E 0.44 deleterious(0.01) benign(0.014) TCGA-GU-AATQ-01 4 134072297 134072297 C T PCDH10 Silent p.G334G 0.25 TCGA-GU-AATQ-01 4 157732170 157732170 C T PDGFC Splice_Site p.X105_splice 0.38 TCGA-GU-AATQ-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.60 deleterious(0.01) possibly_damaging(0.594) TCGA-GU-AATQ-01 4 1804679 1804679 C A FGFR3 Silent p.L323L 0.60 TCGA-GU-AATQ-01 4 1805540 1805540 C G FGFR3 Intron 0.49 TCGA-GU-AATQ-01 4 186545261 186545261 C T SORBS2 Missense_Mutation p.R537K 0.23 deleterious(0.04) probably_damaging(0.99) TCGA-GU-AATQ-01 4 40776837 40776837 C G NSUN7 Missense_Mutation p.S232C 0.43 deleterious(0) probably_damaging(0.95) TCGA-GU-AATQ-01 4 40776892 40776892 C T NSUN7 Silent p.V250V 0.44 TCGA-GU-AATQ-01 4 40776905 40776905 T C NSUN7 Missense_Mutation p.S255P 0.37 tolerated(0.09) benign(0.008) TCGA-GU-AATQ-01 4 40776923 40776923 C G NSUN7 Missense_Mutation p.L261V 0.29 deleterious(0) probably_damaging(0.945) TCGA-GU-AATQ-01 5 109190907 109190907 C A MAN2A1 Missense_Mutation p.H1015N 0.52 tolerated(0.14) probably_damaging(0.978) TCGA-GU-AATQ-01 5 122725695 122725697 GGT - CEP120 In_Frame_Del p.P394del 0.45 TCGA-GU-AATQ-01 5 140476730 140476730 G A PCDHB2 Missense_Mutation p.E786K 0.39 tolerated_low_confidence(0.17) benign(0.021) TCGA-GU-AATQ-01 5 140532017 140532017 G C PCDHB6 Missense_Mutation p.E727Q 0.29 deleterious(0.02) benign(0.173) TCGA-GU-AATQ-01 5 140801482 140801482 C T PCDHGA11 Missense_Mutation p.R230C 0.36 deleterious_low_confidence(0.03) benign(0.042) TCGA-GU-AATQ-01 5 140870245 140870245 G C PCDHGC5 Missense_Mutation p.D480H 0.44 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 5 141385839 141385839 G A GNPDA1 Silent p.F93F 0.06 TCGA-GU-AATQ-01 5 14482799 14482799 G C TRIO Missense_Mutation p.E2192Q 0.41 benign(0.039) TCGA-GU-AATQ-01 5 306786 306786 C T PDCD6 Missense_Mutation p.T93M 0.35 deleterious(0.02) probably_damaging(0.943) TCGA-GU-AATQ-01 5 37183086 37183086 G C C5orf42 Missense_Mutation p.L1733V 0.37 deleterious(0.03) probably_damaging(1) TCGA-GU-AATQ-01 5 38950695 38950695 G T RICTOR Missense_Mutation p.F1085L 0.18 tolerated(0.42) benign(0.05) TCGA-GU-AATQ-01 6 10586511 10586511 T G GCNT2 Intron 0.25 TCGA-GU-AATQ-01 6 128294899 128294899 G A PTPRK Missense_Mutation p.S1354F 0.23 deleterious(0) probably_damaging(0.992) TCGA-GU-AATQ-01 6 13273152 13273152 G C TBC1D7 Intron 0.28 TCGA-GU-AATQ-01 6 152737750 152737750 C T SYNE1 Missense_Mutation p.S1941N 0.22 benign(0.002) TCGA-GU-AATQ-01 6 160237041 160237041 C G PNLDC1 Missense_Mutation p.H335D 0.28 tolerated(0.1) benign(0.021) TCGA-GU-AATQ-01 6 16327116 16327116 C T ATXN1 Missense_Mutation p.G476S 0.23 tolerated(0.3) benign(0.028) TCGA-GU-AATQ-01 6 27419101 27419101 C G ZNF184 Missense_Mutation p.R746T 0.58 deleterious(0) possibly_damaging(0.625) TCGA-GU-AATQ-01 6 46630234 46630234 C A SLC25A27 Silent p.R169R 0.26 TCGA-GU-AATQ-01 6 51497363 51497363 T A PKHD1 Nonsense_Mutation p.K3889* 0.41 TCGA-GU-AATQ-01 6 55039430 55039430 G A HCRTR2 Nonsense_Mutation p.W15* 0.27 TCGA-GU-AATQ-01 6 599090 599090 T C EXOC2 Missense_Mutation p.N293S 0.19 deleterious(0) possibly_damaging(0.899) TCGA-GU-AATQ-01 7 111503351 111503351 C T DOCK4 Intron 0.88 TCGA-GU-AATQ-01 7 11418795 11418795 C T THSD7A Missense_Mutation p.R1568K 0.38 tolerated(1) benign(0.001) TCGA-GU-AATQ-01 7 130370111 130370111 C G TSGA13 5'UTR 0.79 TCGA-GU-AATQ-01 7 134874169 134874169 G C WDR91 Missense_Mutation p.I565M 0.21 deleterious(0) possibly_damaging(0.781) TCGA-GU-AATQ-01 7 142983967 142983967 C G TMEM139 3'UTR 0.75 TCGA-GU-AATQ-01 7 1527060 1527060 G C INTS1 Missense_Mutation p.H848D 0.55 tolerated(0.58) benign(0.007) TCGA-GU-AATQ-01 7 24690122 24690122 G C MPP6 Missense_Mutation p.E148Q 0.40 deleterious(0.01) possibly_damaging(0.868) TCGA-GU-AATQ-01 7 32910167 32910167 C G KBTBD2 Missense_Mutation p.R221T 0.49 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 7 37951845 37951845 T A SFRP4 Missense_Mutation p.I223F 0.32 deleterious(0) possibly_damaging(0.711) TCGA-GU-AATQ-01 7 47904829 47904829 C T PKD1L1 Silent p.V1378V 0.37 TCGA-GU-AATQ-01 7 74167493 74167493 C G GTF2I Silent p.L875L 0.64 TCGA-GU-AATQ-01 8 110476946 110476946 G A PKHD1L1 Missense_Mutation p.E2629K 0.50 tolerated(0.1) benign(0.147) TCGA-GU-AATQ-01 8 113314181 113314181 C T CSMD3 Missense_Mutation p.E2761K 0.49 tolerated(0.07) possibly_damaging(0.515) TCGA-GU-AATQ-01 8 120759046 120759046 C A TAF2 Missense_Mutation p.A1003S 0.13 tolerated(0.25) benign(0.021) TCGA-GU-AATQ-01 8 124266499 124266499 G A ZHX1 Missense_Mutation p.P563L 0.31 tolerated(0.06) benign(0.046) TCGA-GU-AATQ-01 8 126071755 126071755 A T KIAA0196 Missense_Mutation p.N517K 0.61 deleterious(0.02) benign(0.403) TCGA-GU-AATQ-01 8 133723191 133723191 C G TMEM71 3'UTR 0.21 TCGA-GU-AATQ-01 8 21996545 21996545 C T REEP4 Silent p.R149R 0.73 TCGA-GU-AATQ-01 8 42019806 42019806 G A AP3M2 Silent p.T151T 0.37 TCGA-GU-AATQ-01 8 71039096 71039096 G C NCOA2 Missense_Mutation p.R1290G 0.33 tolerated(0.39) probably_damaging(1) TCGA-GU-AATQ-01 8 94808156 94808156 C A TMEM67 Missense_Mutation p.P601T 0.20 deleterious(0) probably_damaging(1) TCGA-GU-AATQ-01 9 101891297 101891297 T C TGFBR1 Silent p.C86C 0.18 TCGA-GU-AATQ-01 9 114246717 114246717 C T KIAA0368 Missense_Mutation p.E66K 0.73 deleterious_low_confidence(0) unknown(0) TCGA-GU-AATQ-01 9 131904852 131904852 G C PPP2R4 Intron 0.20 TCGA-GU-AATQ-01 9 19049890 19049890 G C RRAGA Missense_Mutation p.R78P 0.75 deleterious(0.01) benign(0.235) TCGA-GU-AATQ-01 9 84532225 84532225 C - SPATA31D5P RNA 0.14 TCGA-GU-AATQ-01 9 95018975 95018975 C G IARS Missense_Mutation p.E708D 0.32 tolerated(0.11) benign(0.063) TCGA-GU-AATQ-01 X 151818270 151818270 G A GABRQ Missense_Mutation p.E226K 0.87 tolerated(0.06) benign(0.083) TCGA-GU-AATQ-01 X 44913143 44913144 - C KDM6A Frame_Shift_Ins p.Q274Pfs*9 0.43 TCGA-GU-AATQ-01 X 47092358 47092358 C T USP11 Silent p.F15F 0.40 TCGA-GU-AATQ-01 X 53432589 53432589 C T SMC1A Missense_Mutation p.E583K 0.78 deleterious(0.02) probably_damaging(0.989) TCGA-GU-AATQ-01 X 99854640 99854640 C T TNMD Nonsense_Mutation p.Q294* 0.76 TCGA-GV-A3JV-01 10 102749592 102749592 G C C10orf2 Missense_Mutation p.E479Q 0.23 deleterious(0.04) possibly_damaging(0.838) TCGA-GV-A3JV-01 10 120925084 120925084 C A SFXN4 Nonsense_Mutation p.E26* 0.27 TCGA-GV-A3JV-01 11 105929784 105929784 C T KBTBD3 Missense_Mutation p.R14Q 0.09 tolerated_low_confidence(0.51) benign(0.001) TCGA-GV-A3JV-01 11 125513987 125513987 G A CHEK1 Missense_Mutation p.E309K 0.59 tolerated(0.2) benign(0.024) TCGA-GV-A3JV-01 11 3249921 3249921 C T MRGPRE Missense_Mutation p.G36S 0.09 tolerated(0.41) benign(0.347) TCGA-GV-A3JV-01 11 55065472 55065472 T C TRIM51HP RNA 0.33 TCGA-GV-A3JV-01 11 58294918 58294918 C G LPXN 3'UTR 0.37 TCGA-GV-A3JV-01 11 617954 617954 C T CDHR5 Silent p.P706P 0.42 TCGA-GV-A3JV-01 11 65123927 65123927 C T TIGD3 Silent p.L216L 0.05 TCGA-GV-A3JV-01 11 67077777 67077777 G A SSH3 Silent p.L550L 0.14 TCGA-GV-A3JV-01 11 8947502 8947502 G A C11orf16 Missense_Mutation p.H238Y 0.10 tolerated(0.6) benign(0.245) TCGA-GV-A3JV-01 12 11000981 11000981 G A PRR4 Silent p.F30F 0.47 TCGA-GV-A3JV-01 12 121204154 121204154 G A SPPL3 Missense_Mutation p.A332V 0.24 deleterious(0.01) benign(0.211) TCGA-GV-A3JV-01 12 123186957 123186957 C T HCAR2 Missense_Mutation p.V292M 0.08 deleterious(0) benign(0.411) TCGA-GV-A3JV-01 12 14577646 14577646 C T ATF7IP Missense_Mutation p.S266F 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.683) TCGA-GV-A3JV-01 12 50026812 50026812 G A PRPF40B Missense_Mutation p.E122K 0.25 deleterious(0) benign(0.036) TCGA-GV-A3JV-01 12 52627328 52627328 C G KRT7 Missense_Mutation p.S83C 0.20 deleterious(0.01) possibly_damaging(0.713) TCGA-GV-A3JV-01 12 6105241 6105241 G C VWF Missense_Mutation p.A1997G 0.37 tolerated(0.32) probably_damaging(0.918) TCGA-GV-A3JV-01 12 6981399 6981399 C T SPSB2 Intron 0.26 TCGA-GV-A3JV-01 12 78360077 78360077 T C NAV3 Silent p.A161A 0.42 TCGA-GV-A3JV-01 12 86272345 86272345 G A NTS Missense_Mutation p.E120K 0.14 tolerated(0.2) probably_damaging(0.996) TCGA-GV-A3JV-01 13 103326724 103326724 G A TPP2 Missense_Mutation p.D1142N 0.37 tolerated(0.23) benign(0.075) TCGA-GV-A3JV-01 13 33635874 33635874 G A KL Silent p.L886L 0.19 TCGA-GV-A3JV-01 13 79175873 79175873 C T POU4F1 Missense_Mutation p.E313K 0.26 deleterious(0) unknown(0) TCGA-GV-A3JV-01 14 102549453 102549453 T C HSP90AA1 Missense_Mutation p.K680R 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-GV-A3JV-01 14 23249162 23249162 C T SLC7A7 Missense_Mutation p.V200I 0.26 tolerated(1) benign(0.004) TCGA-GV-A3JV-01 14 23866174 23866174 C A MYH6 Missense_Mutation p.Q722H 0.29 deleterious(0) possibly_damaging(0.544) TCGA-GV-A3JV-01 14 51210232 51210232 G C NIN Missense_Mutation p.L1735V 0.29 tolerated(0.32) benign(0.2) TCGA-GV-A3JV-01 14 94527268 94527268 C T DDX24 Missense_Mutation p.R463Q 0.18 deleterious(0.02) benign(0.046) TCGA-GV-A3JV-01 14 95688091 95688091 C T CLMN Silent p.S87S 0.15 TCGA-GV-A3JV-01 14 97003321 97003321 A G PAPOLA Missense_Mutation p.I347V 0.31 tolerated(0.99) benign(0.22) TCGA-GV-A3JV-01 15 25947187 25947187 C T ATP10A Missense_Mutation p.R879H 0.21 tolerated(0.11) benign(0.022) TCGA-GV-A3JV-01 15 48541868 48541868 C A SLC12A1 Missense_Mutation p.S594Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JV-01 15 57730261 57730261 G A CGNL1 Missense_Mutation p.A22T 0.27 deleterious(0.02) benign(0.042) TCGA-GV-A3JV-01 15 65756226 65756226 G A DPP8 Missense_Mutation p.T631I 0.37 tolerated(0.46) benign(0.001) TCGA-GV-A3JV-01 15 75762295 75762295 G T PTPN9 Missense_Mutation p.P469T 0.23 deleterious(0.04) benign(0.165) TCGA-GV-A3JV-01 15 78790398 78790398 C T IREB2 Silent p.S935S 0.08 TCGA-GV-A3JV-01 15 79060507 79060507 C A ADAMTS7 Missense_Mutation p.Q871H 0.23 tolerated(0.08) benign(0.046) TCGA-GV-A3JV-01 16 2818182 2818182 G C SRRM2 Silent p.S2551S 0.55 TCGA-GV-A3JV-01 16 3779153 3779153 C T CREBBP Silent p.E1965E 0.27 TCGA-GV-A3JV-01 16 55866998 55866998 G A CES1 5'UTR 0.63 TCGA-GV-A3JV-01 16 70405896 70405896 C G DDX19A 3'UTR 0.20 TCGA-GV-A3JV-01 16 775266 775266 C T CCDC78 Missense_Mutation p.E155K 0.17 tolerated(0.64) benign(0.001) TCGA-GV-A3JV-01 17 1028677 1028677 G A ABR Silent p.Y29Y 0.23 TCGA-GV-A3JV-01 17 20108086 20108086 G A SPECC1 Missense_Mutation p.D242N 0.20 tolerated(0.49) benign(0.07) TCGA-GV-A3JV-01 17 39681230 39681231 - AG KRT19 Frame_Shift_Ins p.R176Cfs*3 0.30 TCGA-GV-A3JV-01 17 41343528 41343528 A T NBR1 Missense_Mutation p.I335F 0.19 deleterious(0.02) benign(0.197) TCGA-GV-A3JV-01 17 48649340 48649340 G A CACNA1G Missense_Mutation p.V230I 0.29 deleterious(0) probably_damaging(0.993) TCGA-GV-A3JV-01 17 68172154 68172154 G A KCNJ2 Missense_Mutation p.R325H 0.17 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JV-01 18 19112474 19112474 G A ESCO1 Missense_Mutation p.R779C 0.07 deleterious(0) probably_damaging(1) TCGA-GV-A3JV-01 18 19154691 19154691 T C ESCO1 Silent p.K38K 0.53 TCGA-GV-A3JV-01 18 50731606 50731606 G A DCC Missense_Mutation p.E532K 0.22 tolerated(0.51) benign(0.18) TCGA-GV-A3JV-01 19 14512345 14512345 C T CD97 Missense_Mutation p.P349S 0.11 tolerated(1) benign(0.006) TCGA-GV-A3JV-01 19 23170128 23170128 G C ZNF728 Missense_Mutation p.L70V 0.20 tolerated(0.07) benign(0.001) TCGA-GV-A3JV-01 19 3633441 3633441 G A PIP5K1C Silent p.S666S 0.12 TCGA-GV-A3JV-01 19 36640798 36640798 C T CAPNS1 3'UTR 0.35 TCGA-GV-A3JV-01 19 37038913 37038913 C T ZNF529 Missense_Mutation p.D183N 0.45 tolerated(0.38) benign(0.215) TCGA-GV-A3JV-01 19 41354273 41354273 C T CYP2A6 Missense_Mutation p.D169N 0.16 benign(0.09) TCGA-GV-A3JV-01 19 52954586 52954586 G A ZNF578 5'Flank 0.27 TCGA-GV-A3JV-01 19 53014654 53014654 G - ZNF578 Frame_Shift_Del p.K341Nfs*28 0.15 TCGA-GV-A3JV-01 19 681360 681360 G A FSTL3 Missense_Mutation p.R178Q 0.38 tolerated(0.22) benign(0.012) TCGA-GV-A3JV-01 19 8576365 8576365 C T ZNF414 Intron 0.31 TCGA-GV-A3JV-01 19 8665902 8665902 G A ADAMTS10 Silent p.Y240Y 0.25 TCGA-GV-A3JV-01 19 8996396 8996396 C G MUC16 Missense_Mutation p.E13726Q 0.33 probably_damaging(0.999) TCGA-GV-A3JV-01 1 11867207 11867207 A G CLCN6 Missense_Mutation p.Q36R 0.64 tolerated(0.71) benign(0) TCGA-GV-A3JV-01 1 153915377 153915377 G A DENND4B Missense_Mutation p.P183S 0.06 deleterious(0.01) benign(0.024) TCGA-GV-A3JV-01 1 196197336 196197336 T A KCNT2 3'UTR 0.44 TCGA-GV-A3JV-01 1 201981520 201981521 - G ELF3 Frame_Shift_Ins p.D146Gfs*15 0.09 TCGA-GV-A3JV-01 1 201983142 201983142 C T ELF3 Missense_Mutation p.R331W 0.56 deleterious(0) possibly_damaging(0.872) TCGA-GV-A3JV-01 1 228005156 228005156 G A PRSS38 Silent p.T186T 0.13 TCGA-GV-A3JV-01 1 235922848 235922848 C T LYST Missense_Mutation p.R2102H 0.19 tolerated_low_confidence(0.05) probably_damaging(0.95) TCGA-GV-A3JV-01 1 248084465 248084465 G T OR2T8 Missense_Mutation p.W49L 0.27 tolerated(1) benign(0) TCGA-GV-A3JV-01 1 248084466 248084466 G T OR2T8 Missense_Mutation p.W49C 0.27 tolerated(0.09) benign(0.264) TCGA-GV-A3JV-01 1 248458734 248458734 C A OR2T12 Missense_Mutation p.W49C 0.53 tolerated(0.1) benign(0.156) TCGA-GV-A3JV-01 1 248458735 248458735 C A OR2T12 Missense_Mutation p.W49L 0.52 tolerated(1) benign(0) TCGA-GV-A3JV-01 1 27100375 27100375 C T ARID1A Nonsense_Mutation p.Q1363* 0.56 TCGA-GV-A3JV-01 1 64643579 64643579 C T ROR1 Missense_Mutation p.R619C 0.32 deleterious(0) probably_damaging(1) TCGA-GV-A3JV-01 1 77510286 77510286 C A ST6GALNAC5 Missense_Mutation p.T220N 0.08 probably_damaging(0.989) TCGA-GV-A3JV-01 1 79115948 79115948 G A IFI44 Missense_Mutation p.R23Q 0.26 tolerated(0.68) benign(0.007) TCGA-GV-A3JV-01 1 98187182 98187182 C A DPYD Missense_Mutation p.G123C 0.38 deleterious(0) probably_damaging(1) TCGA-GV-A3JV-01 20 126332 126332 G A DEFB126 Silent p.%3D 0.15 TCGA-GV-A3JV-01 20 17462716 17462716 C T PCSK2 3'UTR 0.19 TCGA-GV-A3JV-01 20 31685499 31685501 AGA - BPIFB4 In_Frame_Del p.K493del 0.19 TCGA-GV-A3JV-01 20 37117126 37117126 C T RALGAPB Silent p.G17G 0.16 TCGA-GV-A3JV-01 20 43572202 43572202 G A TOMM34 Silent p.V239V 0.17 TCGA-GV-A3JV-01 21 33065763 33065763 T C SCAF4 Missense_Mutation p.R453G 0.69 benign(0.152) TCGA-GV-A3JV-01 22 28193514 28193514 C T MN1 Silent p.T1006T 0.25 TCGA-GV-A3JV-01 22 50705688 50705688 G A MAPK11 Missense_Mutation p.R149W 0.16 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JV-01 2 1497623 1497623 C T TPO Silent p.P606P 0.38 TCGA-GV-A3JV-01 3 108682322 108682322 G C MORC1 Missense_Mutation p.S913C 0.42 deleterious(0) benign(0.336) TCGA-GV-A3JV-01 3 11058951 11058951 C T SLC6A1 Silent p.S18S 0.15 TCGA-GV-A3JV-01 3 119445049 119445049 G A MAATS1 Silent p.V238V 0.33 TCGA-GV-A3JV-01 3 13376966 13376966 C T NUP210 Silent p.E1277E 0.13 TCGA-GV-A3JV-01 3 13376980 13376980 C T NUP210 Missense_Mutation p.E1273K 0.10 deleterious(0) possibly_damaging(0.715) TCGA-GV-A3JV-01 3 13377029 13377029 C T NUP210 Silent p.V1256V 0.07 TCGA-GV-A3JV-01 3 13377074 13377074 C T NUP210 Missense_Mutation p.M1241I 0.08 deleterious(0) benign(0.097) TCGA-GV-A3JV-01 3 147127954 147127954 G A ZIC1 Missense_Mutation p.A19T 0.24 tolerated_low_confidence(1) benign(0) TCGA-GV-A3JV-01 3 169485270 169485270 C T ACTRT3 Missense_Mutation p.A357T 0.07 tolerated(0.26) probably_damaging(0.996) TCGA-GV-A3JV-01 3 189455639 189455639 T C TP63 Missense_Mutation p.I58T 0.21 deleterious(0) benign(0.051) TCGA-GV-A3JV-01 3 4687373 4687373 C A ITPR1 Silent p.A272A 0.06 TCGA-GV-A3JV-01 3 47913557 47913558 - CCG MAP4 In_Frame_Ins p.R785dup 0.32 TCGA-GV-A3JV-01 3 61989042 61989042 C T PTPRG Silent p.D130D 0.23 TCGA-GV-A3JV-01 3 68466476 68466476 G A FAM19A1 Silent p.K55K 0.38 TCGA-GV-A3JV-01 4 25005321 25005321 C A LGI2 Missense_Mutation p.A464S 0.15 tolerated(1) benign(0.203) TCGA-GV-A3JV-01 4 38016441 38016441 G A TBC1D1 Silent p.S243S 0.47 TCGA-GV-A3JV-01 4 48549697 48549697 G A FRYL Nonsense_Mutation p.R1660* 0.23 TCGA-GV-A3JV-01 4 55140704 55140704 G A PDGFRA Missense_Mutation p.R522H 0.24 tolerated(0.57) benign(0.001) TCGA-GV-A3JV-01 4 5837699 5837699 G A CRMP1 Silent p.D522D 0.27 TCGA-GV-A3JV-01 5 1232401 1232401 C T SLC6A18 Silent p.L76L 0.08 TCGA-GV-A3JV-01 5 126781188 126781188 G T MEGF10 Missense_Mutation p.R844L 0.47 deleterious(0) benign(0.044) TCGA-GV-A3JV-01 5 137761242 137761242 A G KDM3B Missense_Mutation p.D1461G 0.53 deleterious(0) possibly_damaging(0.688) TCGA-GV-A3JV-01 5 140719540 140719540 C T PCDHGA2 Silent p.I334I 0.22 TCGA-GV-A3JV-01 5 140730581 140730581 G A PCDHGB1 Missense_Mutation p.V252I 0.19 tolerated(0.15) benign(0.072) TCGA-GV-A3JV-01 5 140774130 140774130 C T PCDHGA8 Missense_Mutation p.R584C 0.25 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-GV-A3JV-01 5 482184 482184 C T SLC9A3 Missense_Mutation p.R482H 0.12 tolerated(0.15) possibly_damaging(0.75) TCGA-GV-A3JV-01 5 484634 484634 C T SLC9A3 Splice_Site p.X311_splice 0.36 TCGA-GV-A3JV-01 5 56177590 56177590 C T MAP3K1 Missense_Mutation p.R855C 0.10 deleterious(0) probably_damaging(0.994) TCGA-GV-A3JV-01 6 101307003 101307003 C T ASCC3 Intron 0.19 TCGA-GV-A3JV-01 6 10586259 10586259 C G GCNT2 Intron 0.42 TCGA-GV-A3JV-01 6 129380937 129380937 C T LAMA2 Missense_Mutation p.P98S 0.15 deleterious(0.04) probably_damaging(1) TCGA-GV-A3JV-01 6 135263702 135263702 C T ALDH8A1 Missense_Mutation p.G96E 0.03 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JV-01 6 151055093 151055093 A G PLEKHG1 Silent p.R92R 0.15 TCGA-GV-A3JV-01 6 158564168 158564168 G A SERAC1 Nonsense_Mutation p.Q220* 0.34 TCGA-GV-A3JV-01 6 162864342 162864342 C T PARK2 Silent p.Q57Q 0.22 TCGA-GV-A3JV-01 6 167786608 167786608 C T TCP10 3'UTR 0.14 TCGA-GV-A3JV-01 6 24596319 24596319 A G KIAA0319 Missense_Mutation p.F195L 0.36 tolerated(0.24) benign(0.004) TCGA-GV-A3JV-01 6 26156830 26156830 A G HIST1H1E Missense_Mutation p.Y71C 0.33 deleterious(0) possibly_damaging(0.884) TCGA-GV-A3JV-01 6 30954151 30954151 G A MUC21 Missense_Mutation p.V67M 0.26 tolerated_low_confidence(0.07) unknown(0) TCGA-GV-A3JV-01 6 32146400 32146400 G T RNF5 Missense_Mutation p.V38L 0.23 deleterious(0) probably_damaging(0.99) TCGA-GV-A3JV-01 6 33245984 33245984 C A B3GALT4 Nonsense_Mutation p.S263* 0.42 TCGA-GV-A3JV-01 6 33740447 33740447 C G LEMD2 Missense_Mutation p.W490C 0.48 deleterious(0) probably_damaging(1) TCGA-GV-A3JV-01 6 71234834 71234834 C T FAM135A Nonsense_Mutation p.R683* 0.43 TCGA-GV-A3JV-01 7 100686998 100686998 C T MUC17 Missense_Mutation p.R4101W 0.20 unknown(0) TCGA-GV-A3JV-01 7 121741434 121741434 C T AASS Missense_Mutation p.R466Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JV-01 7 138601663 138601663 G A KIAA1549 Silent p.D903D 0.07 TCGA-GV-A3JV-01 7 148768943 148768943 T C ZNF786 Silent p.P307P 0.38 TCGA-GV-A3JV-01 7 29132262 29132262 G A CPVL Silent p.D173D 0.13 TCGA-GV-A3JV-01 7 72850005 72850005 C T FZD9 Silent p.R556R 0.11 TCGA-GV-A3JV-01 7 99314836 99314836 C T CYP3A7 Missense_Mutation p.R162Q 0.20 tolerated(0.22) benign(0.002) TCGA-GV-A3JV-01 8 100865842 100865842 G A VPS13B Missense_Mutation p.E3434K 0.43 tolerated(0.24) benign(0.292) TCGA-GV-A3JV-01 8 109797359 109797359 C T TMEM74 5'UTR 0.28 TCGA-GV-A3JV-01 8 110498987 110498987 G A PKHD1L1 Missense_Mutation p.E3273K 0.15 tolerated(1) benign(0) TCGA-GV-A3JV-01 8 113694839 113694839 G A CSMD3 Missense_Mutation p.P837S 0.08 deleterious(0) probably_damaging(1) TCGA-GV-A3JV-01 8 117950663 117950663 C T AARD Nonsense_Mutation p.R61* 0.10 TCGA-GV-A3JV-01 8 125082841 125082841 C T FER1L6 Splice_Site p.X1322_splice 0.23 TCGA-GV-A3JV-01 8 142229828 142229828 C A SLC45A4 Silent p.G126G 0.15 TCGA-GV-A3JV-01 8 142481169 142481169 C G MROH5 3'UTR 0.19 TCGA-GV-A3JV-01 8 17157445 17157445 C T MTMR7 Missense_Mutation p.G637S 0.52 tolerated_low_confidence(0.1) benign(0.073) TCGA-GV-A3JV-01 8 28385479 28385479 G T FZD3 Missense_Mutation p.R401L 0.51 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JV-01 8 33247281 33247281 G A FUT10 Missense_Mutation p.R138W 0.32 deleterious(0) probably_damaging(1) TCGA-GV-A3JV-01 8 52384861 52384861 C A PXDNL Missense_Mutation p.S233I 0.11 tolerated(0.05) benign(0.092) TCGA-GV-A3JV-01 9 139399897 139399897 T A NOTCH1 Missense_Mutation p.N1484I 0.19 deleterious(0.02) benign(0.053) TCGA-GV-A3JV-01 9 35547012 35547012 G A RUSC2 Missense_Mutation p.R165Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-GV-A3JV-01 9 5431965 5431965 A T PLGRKT Missense_Mutation p.F5I 0.50 tolerated(0.28) benign(0.003) TCGA-GV-A3JV-01 9 95081520 95081520 C T NOL8 Missense_Mutation p.E134K 0.27 deleterious(0) probably_damaging(0.979) TCGA-GV-A3JV-01 X 10188760 10188760 G A CLCN4 Missense_Mutation p.E679K 0.75 tolerated(0.57) benign(0.002) TCGA-GV-A3JV-01 X 73066652 73066652 A G XIST RNA 0.38 TCGA-GV-A3JW-01 10 121663630 121663630 G A SEC23IP Silent p.T314T 0.06 TCGA-GV-A3JW-01 10 17891674 17891674 G C MRC1L1 Missense_Mutation p.R385S 0.38 benign(0.055) TCGA-GV-A3JW-01 10 18112340 18112340 G A MRC1 Missense_Mutation p.G120S 0.44 deleterious(0.04) probably_damaging(0.998) TCGA-GV-A3JW-01 10 94405356 94405356 C G KIF11 Missense_Mutation p.S835C 0.39 tolerated(0.06) benign(0.021) TCGA-GV-A3JW-01 10 99190742 99190742 C G PGAM1 Missense_Mutation p.Q149E 0.34 tolerated(1) benign(0.001) TCGA-GV-A3JW-01 11 10327407 10327407 G A ADM Intron 0.33 TCGA-GV-A3JW-01 11 123624493 123624493 A G OR6X1 Missense_Mutation p.V245A 0.33 deleterious(0.04) possibly_damaging(0.739) TCGA-GV-A3JW-01 11 124952197 124952197 C A SLC37A2 Missense_Mutation p.L315I 0.38 deleterious(0) probably_damaging(0.949) TCGA-GV-A3JW-01 11 3794864 3794864 C G NUP98 Missense_Mutation p.E201Q 0.55 deleterious(0.02) probably_damaging(0.997) TCGA-GV-A3JW-01 11 5602231 5602231 A C OR52B6 Missense_Mutation p.Q42P 0.35 tolerated(0.25) benign(0) TCGA-GV-A3JW-01 12 12232321 12232321 G A BCL2L14 Missense_Mutation p.A28T 0.42 tolerated(0.43) benign(0.102) TCGA-GV-A3JW-01 12 56716212 56716212 C T PAN2 Missense_Mutation p.D902N 0.23 tolerated(0.16) probably_damaging(0.987) TCGA-GV-A3JW-01 13 110436504 110436504 C T IRS2 Missense_Mutation p.G633R 0.47 tolerated(0.26) benign(0.41) TCGA-GV-A3JW-01 13 25840079 25840079 C T MTMR6 Missense_Mutation p.E157K 0.39 deleterious(0.01) benign(0.255) TCGA-GV-A3JW-01 13 29284894 29284894 C T SLC46A3 Intron 0.24 TCGA-GV-A3JW-01 13 42876628 42876628 C G AKAP11 Nonsense_Mutation p.S1249* 0.74 TCGA-GV-A3JW-01 14 105936438 105936438 G C MTA1 Missense_Mutation p.K678N 0.30 deleterious(0) probably_damaging(0.987) TCGA-GV-A3JW-01 14 23746018 23746018 G T HOMEZ Missense_Mutation p.S140Y 0.27 deleterious(0) possibly_damaging(0.877) TCGA-GV-A3JW-01 14 24731538 24731538 G A TGM1 Silent p.S7S 0.23 TCGA-GV-A3JW-01 14 53251332 53251332 G C GNPNAT1 Missense_Mutation p.L13V 0.44 tolerated(0.16) benign(0.037) TCGA-GV-A3JW-01 14 70418941 70418941 C A SMOC1 Silent p.S62S 0.30 TCGA-GV-A3JW-01 14 70991613 70991613 G A ADAM20 Silent p.L4L 0.54 TCGA-GV-A3JW-01 15 28458889 28458889 G A HERC2 Missense_Mutation p.P2262L 0.34 benign(0.004) TCGA-GV-A3JW-01 15 52632551 52632551 C T MYO5A Missense_Mutation p.E1361K 0.12 tolerated(0.19) benign(0.014) TCGA-GV-A3JW-01 16 29883848 29883848 C G SEZ6L2 Splice_Site p.X830_splice 0.18 TCGA-GV-A3JW-01 16 30018508 30018508 C T DOC2A Missense_Mutation p.E214K 0.04 deleterious(0.01) benign(0.175) TCGA-GV-A3JW-01 16 30536523 30536523 C T ZNF768 Missense_Mutation p.G313D 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GV-A3JW-01 16 30537018 30537018 C A ZNF768 Missense_Mutation p.R148I 0.20 tolerated_low_confidence(0.06) benign(0.012) TCGA-GV-A3JW-01 16 30537349 30537349 C T ZNF768 Missense_Mutation p.E38K 0.17 deleterious_low_confidence(0.01) benign(0.057) TCGA-GV-A3JW-01 16 30545884 30545884 G A ZNF747 Silent p.F39F 0.35 TCGA-GV-A3JW-01 16 48234386 48234386 C T ABCC11 Missense_Mutation p.G628E 0.10 deleterious(0) probably_damaging(1) TCGA-GV-A3JW-01 16 48234387 48234387 C A ABCC11 Nonsense_Mutation p.G628* 0.11 TCGA-GV-A3JW-01 16 67942648 67942648 C A PSKH1 5'UTR 0.25 TCGA-GV-A3JW-01 16 83711918 83711918 G A CDH13 Missense_Mutation p.V511I 0.15 tolerated(0.05) probably_damaging(0.996) TCGA-GV-A3JW-01 17 18155374 18155374 C T FLII Silent p.S395S 0.49 TCGA-GV-A3JW-01 17 2279473 2279473 G A SGSM2 Missense_Mutation p.D843N 0.16 deleterious(0) probably_damaging(0.995) TCGA-GV-A3JW-01 17 33769022 33769022 C T SLFN13 Silent p.L494L 0.08 TCGA-GV-A3JW-01 17 4718857 4718857 G A PLD2 Silent p.L420L 0.22 TCGA-GV-A3JW-01 17 48155574 48155574 G A ITGA3 Silent p.S741S 0.05 TCGA-GV-A3JW-01 17 5331461 5331461 G T RPAIN Missense_Mutation p.C187F 0.47 deleterious(0) probably_damaging(1) TCGA-GV-A3JW-01 17 62230483 62230483 T G TEX2 Missense_Mutation p.M995L 0.16 tolerated(0.54) benign(0.012) TCGA-GV-A3JW-01 17 65941562 65941562 G A BPTF Silent p.Q2246Q 0.31 TCGA-GV-A3JW-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.86 deleterious(0) possibly_damaging(0.9) TCGA-GV-A3JW-01 17 80333364 80333364 G A UTS2R Silent p.P388P 0.38 TCGA-GV-A3JW-01 18 8624998 8624998 T C RAB12 Splice_Site p.X96_splice 0.31 TCGA-GV-A3JW-01 19 10402342 10402342 G A ICAM5 Missense_Mutation p.R177Q 0.23 tolerated(0.07) benign(0.057) TCGA-GV-A3JW-01 19 18545149 18545149 G A SSBP4 3'UTR 0.36 TCGA-GV-A3JW-01 19 18778894 18778894 G A KLHL26 Silent p.A229A 0.37 TCGA-GV-A3JW-01 19 50216744 50216744 G A CPT1C Missense_Mutation p.G765E 0.19 tolerated(0.18) benign(0.037) TCGA-GV-A3JW-01 19 58639722 58639722 G A ZNF329 Silent p.N383N 0.26 TCGA-GV-A3JW-01 1 158746645 158746645 G A OR6N2 Missense_Mutation p.R261W 0.21 deleterious(0.02) possibly_damaging(0.458) TCGA-GV-A3JW-01 1 171890908 171890908 C T DNM3 Missense_Mutation p.S61L 0.45 deleterious(0) probably_damaging(0.961) TCGA-GV-A3JW-01 1 214184960 214184960 A C PROX1 Missense_Mutation p.N644H 0.89 deleterious(0.02) probably_damaging(0.997) TCGA-GV-A3JW-01 1 57373628 57373628 G A C8A Splice_Site p.X408_splice 0.28 TCGA-GV-A3JW-01 20 40049547 40049547 C G CHD6 Missense_Mutation p.D1910H 0.36 deleterious_low_confidence(0.03) benign(0.221) TCGA-GV-A3JW-01 20 47266680 47266680 G A PREX1 Missense_Mutation p.P961L 0.20 deleterious(0.03) benign(0.002) TCGA-GV-A3JW-01 20 48098835 48098835 G A KCNB1 Silent p.R61R 0.16 TCGA-GV-A3JW-01 21 34621017 34621017 C G IFNAR2 Missense_Mutation p.S133C 0.17 tolerated(0.16) probably_damaging(0.985) TCGA-GV-A3JW-01 2 103013325 103013325 G A IL18R1 Silent p.L535L 0.29 TCGA-GV-A3JW-01 2 108994731 108994731 C T SULT1C4 5'UTR 0.19 TCGA-GV-A3JW-01 2 27600891 27600892 TG - ZNF513 Frame_Shift_Del p.H382Qfs*3 0.25 TCGA-GV-A3JW-01 2 96698049 96698049 C T GPAT2 Missense_Mutation p.R20Q 0.13 tolerated_low_confidence(0.68) unknown(0) TCGA-GV-A3JW-01 3 10264330 10264330 T G IRAK2 Missense_Mutation p.L342V 0.19 deleterious(0) probably_damaging(0.997) TCGA-GV-A3JW-01 3 10342968 10342968 C G SEC13 Missense_Mutation p.E316Q 0.09 tolerated_low_confidence(0.35) benign(0.001) TCGA-GV-A3JW-01 3 130285707 130285707 G A COL6A6 Missense_Mutation p.D482N 0.18 tolerated(0.37) possibly_damaging(0.744) TCGA-GV-A3JW-01 3 141011518 141011518 A G ACPL2 Missense_Mutation p.N305S 0.12 tolerated(0.19) possibly_damaging(0.525) TCGA-GV-A3JW-01 3 194373664 194373664 C T LSG1 Missense_Mutation p.E323K 0.05 tolerated(0.14) possibly_damaging(0.805) TCGA-GV-A3JW-01 3 33870428 33870428 G A PDCD6IP Silent p.Q272Q 0.24 TCGA-GV-A3JW-01 3 5249807 5249807 C T EDEM1 Silent p.I456I 0.35 TCGA-GV-A3JW-01 4 15780011 15780011 C T CD38 5'UTR 0.24 TCGA-GV-A3JW-01 4 79832995 79832995 C T BMP2K Silent p.V1098V 0.09 TCGA-GV-A3JW-01 4 83348369 83348369 C T HNRNPDL Missense_Mutation p.R332Q 0.27 tolerated(0.24) benign(0.013) TCGA-GV-A3JW-01 5 112769745 112769745 G A TSSK1B Silent p.D264D 0.10 TCGA-GV-A3JW-01 5 140175132 140175132 G A PCDHA2 Missense_Mutation p.V195M 0.43 deleterious_low_confidence(0.01) benign(0.262) TCGA-GV-A3JW-01 5 140784367 140784367 C T PCDHGA9 Silent p.L616L 0.50 TCGA-GV-A3JW-01 5 149755460 149755460 G C TCOF1 Missense_Mutation p.M627I 0.29 tolerated(0.36) benign(0.006) TCGA-GV-A3JW-01 5 156786153 156786153 C T CYFIP2 Silent p.S912S 0.54 TCGA-GV-A3JW-01 5 45262592 45262592 C T HCN1 Missense_Mutation p.A702T 0.76 deleterious_low_confidence(0.04) benign(0.041) TCGA-GV-A3JW-01 5 55088541 55088541 G A DDX4 Missense_Mutation p.E459K 0.41 deleterious(0.02) probably_damaging(0.963) TCGA-GV-A3JW-01 5 55094390 55094390 C G DDX4 Missense_Mutation p.R536G 0.34 tolerated(0.2) benign(0.156) TCGA-GV-A3JW-01 5 64756014 64756014 G C ADAMTS6 Missense_Mutation p.S205C 0.45 deleterious(0.03) benign(0.195) TCGA-GV-A3JW-01 5 78294073 78294073 C G DMGDH Missense_Mutation p.K811N 0.37 deleterious(0.01) possibly_damaging(0.827) TCGA-GV-A3JW-01 6 134498841 134498841 G T SGK1 Intron 0.31 TCGA-GV-A3JW-01 6 18121856 18121856 C G NHLRC1 Missense_Mutation p.D328H 0.42 deleterious(0) probably_damaging(0.992) TCGA-GV-A3JW-01 6 18122765 18122765 C A NHLRC1 Nonsense_Mutation p.E25* 0.36 TCGA-GV-A3JW-01 6 18122786 18122786 C T NHLRC1 Missense_Mutation p.E18K 0.36 deleterious(0) probably_damaging(0.943) TCGA-GV-A3JW-01 6 3224961 3224961 C A TUBB2B 3'UTR 0.23 TCGA-GV-A3JW-01 6 32485433 32485433 G A HLA-DRB5 3'UTR 0.33 TCGA-GV-A3JW-01 7 141490151 141490151 T A TAS2R5 5'UTR 0.25 TCGA-GV-A3JW-01 7 29070210 29070210 C G CPVL Missense_Mutation p.A435P 0.48 deleterious(0.01) possibly_damaging(0.639) TCGA-GV-A3JW-01 7 30485764 30485764 C G NOD1 Missense_Mutation p.E816Q 0.07 tolerated(0.21) benign(0.289) TCGA-GV-A3JW-01 7 36657936 36657936 C G AOAH Missense_Mutation p.D240H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-GV-A3JW-01 7 99308460 99308460 A C CYP3A7 Nonsense_Mutation p.Y307* 0.38 TCGA-GV-A3JW-01 8 120598469 120598469 C G ENPP2 Missense_Mutation p.E494Q 0.28 deleterious(0) probably_damaging(0.976) TCGA-GV-A3JW-01 8 120620168 120620168 C A ENPP2 Missense_Mutation p.W276L 0.15 deleterious(0.04) benign(0.062) TCGA-GV-A3JW-01 8 28210752 28210752 G A ZNF395 Missense_Mutation p.H253Y 0.54 deleterious(0.03) benign(0.331) TCGA-GV-A3JW-01 9 114206748 114206748 A C KIAA0368 Missense_Mutation p.N238K 0.19 deleterious(0.04) probably_damaging(0.91) TCGA-GV-A3JW-01 9 117165217 117165217 C T DFNB31 Splice_Site p.X848_splice 0.31 TCGA-GV-A3JW-01 9 123742496 123742496 G T C5 Missense_Mutation p.L1175M 0.13 deleterious(0.02) possibly_damaging(0.868) TCGA-GV-A3JW-01 9 131038427 131038427 G A SWI5 Translation_Start_Site p.M1? 0.47 unknown(0) TCGA-GV-A3JW-01 9 131397988 131397988 C A WDR34 Silent p.L254L 0.06 TCGA-GV-A3JW-01 X 54321158 54321158 C G WNK3 Missense_Mutation p.R507S 0.94 deleterious(0.03) benign(0.019) TCGA-GV-A3JX-01 10 102056962 102056962 C T PKD2L1 Silent p.L320L 0.06 TCGA-GV-A3JX-01 10 105191938 105191938 G A PDCD11 Missense_Mutation p.E1141K 0.20 tolerated(0.28) benign(0.039) TCGA-GV-A3JX-01 10 108371749 108371749 G C SORCS1 Missense_Mutation p.P985A 0.80 deleterious(0.03) benign(0.043) TCGA-GV-A3JX-01 10 129904104 129904104 C G MKI67 Missense_Mutation p.K2000N 0.78 deleterious(0.01) possibly_damaging(0.872) TCGA-GV-A3JX-01 10 17145185 17145185 G - CUBN Frame_Shift_Del p.P490Rfs*32 0.31 TCGA-GV-A3JX-01 10 28276464 28276464 G C ARMC4 Missense_Mutation p.T78R 0.27 tolerated(0.09) benign(0.013) TCGA-GV-A3JX-01 10 75849105 75849105 C T VCL Nonsense_Mutation p.Q392* 0.81 TCGA-GV-A3JX-01 11 101868342 101868342 G C KIAA1377 Missense_Mutation p.D1108H 0.05 tolerated(0.55) benign(0.002) TCGA-GV-A3JX-01 11 111896985 111896985 G A DLAT Missense_Mutation p.E115K 0.24 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 11 113672370 113672370 C T USP28 Missense_Mutation p.E965K 0.37 tolerated(0.2) benign(0.206) TCGA-GV-A3JX-01 11 118485345 118485345 C T PHLDB1 Silent p.S44S 0.40 TCGA-GV-A3JX-01 11 121485651 121485651 C G SORL1 Missense_Mutation p.L1831V 0.07 tolerated(0.64) benign(0.02) TCGA-GV-A3JX-01 11 122672000 122672000 G C UBASH3B Missense_Mutation p.E519Q 0.07 deleterious(0) possibly_damaging(0.485) TCGA-GV-A3JX-01 11 124253209 124253209 C T OR8B2 Missense_Mutation p.E11K 0.14 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-GV-A3JX-01 11 129785719 129785719 G C PRDM10 Missense_Mutation p.L792V 0.04 tolerated(0.21) probably_damaging(0.99) TCGA-GV-A3JX-01 11 130003611 130003611 C G APLP2 Missense_Mutation p.Q558E 0.04 deleterious(0) probably_damaging(0.935) TCGA-GV-A3JX-01 11 1642643 1642643 C G KRTAP5-4 Missense_Mutation p.K227N 0.05 deleterious_low_confidence(0) unknown(0) TCGA-GV-A3JX-01 11 18159013 18159013 C G MRGPRX3 Missense_Mutation p.I88M 0.43 tolerated(0.1) benign(0.309) TCGA-GV-A3JX-01 11 2427906 2427906 C T TRPM5 Missense_Mutation p.R1079Q 0.43 tolerated(0.1) benign(0.059) TCGA-GV-A3JX-01 11 34181459 34181459 G C ABTB2 Missense_Mutation p.S867C 0.55 deleterious(0) probably_damaging(0.984) TCGA-GV-A3JX-01 11 4790271 4790271 T C OR51F1 Missense_Mutation p.I293V 0.45 tolerated(0.25) possibly_damaging(0.467) TCGA-GV-A3JX-01 11 55655686 55655686 T C TRIM51 Missense_Mutation p.M229T 0.10 tolerated(0.09) benign(0.004) TCGA-GV-A3JX-01 11 57367761 57367761 A G SERPING1 Missense_Mutation p.Y154C 0.06 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JX-01 11 61507077 61507077 C T DAGLA Silent p.L599L 0.41 TCGA-GV-A3JX-01 11 6239789 6239789 C T FAM160A2 Silent p.T492T 0.34 TCGA-GV-A3JX-01 11 65266095 65266095 C T MALAT1 RNA 0.06 TCGA-GV-A3JX-01 11 65269421 65269421 G C MALAT1 RNA 0.12 TCGA-GV-A3JX-01 11 65273757 65273757 G C MALAT1 RNA 0.10 TCGA-GV-A3JX-01 11 6942471 6942471 G C OR2D3 Missense_Mutation p.R80T 0.46 tolerated(0.96) benign(0.004) TCGA-GV-A3JX-01 11 71238815 71238815 G T KRTAP5-7 Missense_Mutation p.V157F 0.40 tolerated_low_confidence(0.07) unknown(0) TCGA-GV-A3JX-01 11 85366703 85366704 - TA TMEM126A Frame_Shift_Ins p.P118Tfs*9 0.25 TCGA-GV-A3JX-01 11 92087838 92087838 G A FAT3 Missense_Mutation p.E854K 0.45 possibly_damaging(0.842) TCGA-GV-A3JX-01 12 100594735 100594735 G A ACTR6 Intron 0.45 TCGA-GV-A3JX-01 12 102122982 102122982 C T SYCP3 Missense_Mutation p.E188K 0.38 deleterious(0.01) possibly_damaging(0.677) TCGA-GV-A3JX-01 12 104487163 104487163 G A HCFC2 Splice_Site p.X429_splice 0.12 TCGA-GV-A3JX-01 12 10562024 10562024 C G KLRC4 Missense_Mutation p.D51H 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-GV-A3JX-01 12 10962188 10962188 C G TAS2R9 Missense_Mutation p.E163Q 0.11 tolerated(0.38) possibly_damaging(0.589) TCGA-GV-A3JX-01 12 110002929 110002929 G A MMAB Nonsense_Mutation p.Q115* 0.08 TCGA-GV-A3JX-01 12 112512548 112512548 T C NAA25 Missense_Mutation p.Y266C 0.40 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JX-01 12 122018082 122018082 G C KDM2B Intron 0.24 TCGA-GV-A3JX-01 12 123214255 123214255 C G HCAR1 Missense_Mutation p.R211T 0.39 tolerated(0.09) possibly_damaging(0.868) TCGA-GV-A3JX-01 12 123214498 123214498 C T HCAR1 Missense_Mutation p.R130Q 0.44 tolerated(0.19) benign(0.068) TCGA-GV-A3JX-01 12 129431880 129431880 C T GLT1D1 Intron 0.42 TCGA-GV-A3JX-01 12 18552648 18552648 G A PIK3C2G Missense_Mutation p.E687K 0.31 deleterious(0.05) benign(0.314) TCGA-GV-A3JX-01 12 22063765 22063765 G C ABCC9 Missense_Mutation p.L387V 0.11 tolerated(0.07) benign(0.074) TCGA-GV-A3JX-01 12 42835254 42835254 C T PPHLN1 Intron 0.45 TCGA-GV-A3JX-01 12 4639192 4639192 C G C12orf4 Missense_Mutation p.E117Q 0.05 tolerated(0.18) probably_damaging(0.91) TCGA-GV-A3JX-01 12 50044977 50044977 C T FMNL3 Missense_Mutation p.E591K 0.06 deleterious(0) probably_damaging(0.991) TCGA-GV-A3JX-01 12 50642443 50642443 G A LIMA1 Missense_Mutation p.S31L 0.46 deleterious(0) probably_damaging(0.954) TCGA-GV-A3JX-01 12 53227849 53227849 C T KRT79 Missense_Mutation p.G66R 0.43 tolerated(0.05) benign(0.135) TCGA-GV-A3JX-01 12 53676185 53676185 C G ESPL1 Silent p.L919L 0.07 TCGA-GV-A3JX-01 12 56825382 56825382 C T TIMELESS Missense_Mutation p.E232K 0.05 deleterious(0.01) benign(0.439) TCGA-GV-A3JX-01 12 56999009 56999010 - CA BAZ2A Frame_Shift_Ins p.L868Cfs*38 0.22 TCGA-GV-A3JX-01 12 58144834 58144834 G C CDK4 Missense_Mutation p.H132D 0.07 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JX-01 12 58144855 58144855 G C CDK4 Missense_Mutation p.L125V 0.05 deleterious(0.05) benign(0.265) TCGA-GV-A3JX-01 12 85266414 85266414 G C SLC6A15 Silent p.L423L 0.37 TCGA-GV-A3JX-01 12 99020349 99020349 C T IKBIP Missense_Mutation p.E165K 0.45 tolerated(0.15) possibly_damaging(0.851) TCGA-GV-A3JX-01 13 111268081 111268081 C T CARKD Silent p.L20L 0.53 TCGA-GV-A3JX-01 13 114523972 114523972 C T GAS6 Silent p.A634A 0.06 TCGA-GV-A3JX-01 13 28601286 28601286 C G FLT3 Missense_Mutation p.E716Q 0.07 deleterious(0.01) possibly_damaging(0.871) TCGA-GV-A3JX-01 13 32757127 32757127 G C FRY Missense_Mutation p.E1004Q 0.07 deleterious(0) probably_damaging(0.989) TCGA-GV-A3JX-01 13 48934194 48934194 C T RB1 Nonsense_Mutation p.Q217* 0.80 TCGA-GV-A3JX-01 13 53420645 53420645 C A PCDH8 Nonsense_Mutation p.E643* 0.52 TCGA-GV-A3JX-01 13 53420766 53420766 C G PCDH8 Missense_Mutation p.Q602H 0.30 deleterious(0) possibly_damaging(0.606) TCGA-GV-A3JX-01 13 96246297 96246297 T C DZIP1 Silent p.L527L 0.33 TCGA-GV-A3JX-01 14 102718331 102718331 C G MOK Silent p.G95G 0.06 TCGA-GV-A3JX-01 14 104642805 104642805 G A KIF26A Missense_Mutation p.R1227H 0.45 tolerated(0.16) benign(0.007) TCGA-GV-A3JX-01 14 21993420 21993420 C T SALL2 Missense_Mutation p.G148R 0.39 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 14 31626439 31626439 C T HECTD1 Missense_Mutation p.D565N 0.45 tolerated(0.55) benign(0.008) TCGA-GV-A3JX-01 14 56142555 56142555 G A KTN1 Silent p.L1258L 0.40 TCGA-GV-A3JX-01 14 58954657 58954657 T G KIAA0586 Silent p.T1172T 0.31 TCGA-GV-A3JX-01 14 64619413 64619413 G C SYNE2 Missense_Mutation p.K5257N 0.06 probably_damaging(0.988) TCGA-GV-A3JX-01 14 68260378 68260378 C G ZFYVE26 Missense_Mutation p.E834Q 0.66 deleterious(0) probably_damaging(0.997) TCGA-GV-A3JX-01 14 73637508 73637508 G A PSEN1 Missense_Mutation p.D31N 0.08 tolerated(0.25) benign(0.254) TCGA-GV-A3JX-01 14 74567922 74567922 T C LIN52 Silent p.Y92Y 0.27 TCGA-GV-A3JX-01 14 74825046 74825046 G C VRTN Silent p.L520L 0.28 TCGA-GV-A3JX-01 14 77797454 77797454 C G GSTZ1 Missense_Mutation p.I189M 0.51 deleterious(0) probably_damaging(0.943) TCGA-GV-A3JX-01 14 94936059 94936059 G C SERPINA9 Missense_Mutation p.P58R 0.12 deleterious(0.02) possibly_damaging(0.804) TCGA-GV-A3JX-01 15 41657646 41657646 G C NUSAP1 Missense_Mutation p.R236T 0.54 deleterious(0.03) possibly_damaging(0.735) TCGA-GV-A3JX-01 15 49255156 49255156 G T SHC4 Missense_Mutation p.F19L 0.75 tolerated_low_confidence(0.56) benign(0.002) TCGA-GV-A3JX-01 15 75183866 75183866 C T MPI Silent p.L97L 0.13 TCGA-GV-A3JX-01 15 91483695 91483695 C G UNC45A Missense_Mutation p.Q227E 0.13 tolerated(0.54) benign(0.016) TCGA-GV-A3JX-01 16 20331027 20331027 C G GP2 Missense_Mutation p.D311H 0.82 deleterious(0) probably_damaging(0.996) TCGA-GV-A3JX-01 16 20552067 20552067 G T ACSM2B Nonsense_Mutation p.S513* 0.85 TCGA-GV-A3JX-01 16 30616005 30616005 G C ZNF689 Silent p.L361L 0.20 TCGA-GV-A3JX-01 16 30616651 30616651 G A ZNF689 Missense_Mutation p.S146F 0.13 tolerated(0.17) benign(0.159) TCGA-GV-A3JX-01 16 3349173 3349173 C T TIGD7 Missense_Mutation p.R481K 0.84 tolerated(0.75) benign(0.002) TCGA-GV-A3JX-01 16 3820785 3820785 G C CREBBP Nonsense_Mutation p.S889* 0.15 TCGA-GV-A3JX-01 16 67323532 67323532 C G KCTD19 Missense_Mutation p.Q907H 0.79 deleterious(0) possibly_damaging(0.778) TCGA-GV-A3JX-01 16 700002 700002 G A WDR90 Silent p.L38L 0.16 TCGA-GV-A3JX-01 16 83704469 83704469 C T CDH13 Silent p.T439T 0.89 TCGA-GV-A3JX-01 17 1370776 1370776 G A MYO1C Silent p.G1021G 0.13 TCGA-GV-A3JX-01 17 16137360 16137360 C G PIGL Missense_Mutation p.S104C 0.89 deleterious(0.01) benign(0.238) TCGA-GV-A3JX-01 17 18060494 18060494 G A MYO15A Missense_Mutation p.R2913H 0.13 unknown(0) TCGA-GV-A3JX-01 17 18880947 18880947 C G FAM83G Missense_Mutation p.D678H 0.14 tolerated(0.59) benign(0.004) TCGA-GV-A3JX-01 17 19285429 19285429 C T MAPK7 Missense_Mutation p.P605S 1.00 tolerated(0.83) unknown(0) TCGA-GV-A3JX-01 17 21086979 21086979 G A DHRS7B Missense_Mutation p.E128K 0.42 tolerated(0.4) benign(0.068) TCGA-GV-A3JX-01 17 29857477 29857477 C T RAB11FIP4 Missense_Mutation p.S596L 0.51 deleterious(0) probably_damaging(0.997) TCGA-GV-A3JX-01 17 33430494 33430494 G A RAD51L3-RFFL Silent p.L57L 0.40 TCGA-GV-A3JX-01 17 37587411 37587411 C G MED1 Missense_Mutation p.K202N 0.41 tolerated(0.25) possibly_damaging(0.561) TCGA-GV-A3JX-01 17 39502796 39502796 C A KRT33A Missense_Mutation p.R334L 0.41 deleterious(0) probably_damaging(0.996) TCGA-GV-A3JX-01 17 39538044 39538044 G C KRT34 Missense_Mutation p.L160V 0.46 deleterious(0) possibly_damaging(0.58) TCGA-GV-A3JX-01 17 42284923 42284923 C T UBTF Missense_Mutation p.E690K 0.36 tolerated(0.32) benign(0.002) TCGA-GV-A3JX-01 17 44067367 44067367 C A MAPT Missense_Mutation p.P436T 0.45 tolerated(0.11) benign(0.001) TCGA-GV-A3JX-01 17 44067368 44067368 C T MAPT Missense_Mutation p.P436L 0.45 deleterious(0.01) benign(0.015) TCGA-GV-A3JX-01 17 44067427 44067427 G A MAPT Missense_Mutation p.E456K 0.45 deleterious(0) possibly_damaging(0.557) TCGA-GV-A3JX-01 17 46863537 46863537 C T TTLL6 Missense_Mutation p.A584T 0.43 tolerated(0.47) benign(0.015) TCGA-GV-A3JX-01 17 47699430 47699430 C A SPOP Splice_Site p.X27_splice 0.40 TCGA-GV-A3JX-01 17 49337968 49337968 G A UTP18 Missense_Mutation p.R8Q 0.28 deleterious_low_confidence(0.02) benign(0.054) TCGA-GV-A3JX-01 17 60813767 60813767 C A MARCH10 Missense_Mutation p.D488Y 0.09 deleterious(0) possibly_damaging(0.828) TCGA-GV-A3JX-01 17 6703366 6703366 G A TEKT1 Missense_Mutation p.R413C 0.37 tolerated_low_confidence(0.18) benign(0.001) TCGA-GV-A3JX-01 17 72368385 72368385 G A GPR142 Silent p.R345R 0.44 TCGA-GV-A3JX-01 17 73231773 73231773 G A NUP85 Silent p.%3D 0.10 TCGA-GV-A3JX-01 17 73695901 73695901 G A SAP30BP Missense_Mutation p.E116K 0.31 tolerated(0.16) benign(0.006) TCGA-GV-A3JX-01 17 73695932 73695932 G C SAP30BP Missense_Mutation p.R126T 0.32 deleterious(0.01) benign(0.403) TCGA-GV-A3JX-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.86 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 17 78111277 78111277 C T EIF4A3 Missense_Mutation p.M297I 0.51 deleterious(0) benign(0.376) TCGA-GV-A3JX-01 18 12367072 12367072 G C AFG3L2 Silent p.L148L 0.05 TCGA-GV-A3JX-01 18 12535472 12535472 C T SPIRE1 Intron 0.20 TCGA-GV-A3JX-01 18 14764040 14764040 T C ANKRD30B Silent p.N392N 0.77 TCGA-GV-A3JX-01 18 22807046 22807046 G A ZNF521 Missense_Mutation p.A279V 0.05 tolerated(0.16) possibly_damaging(0.599) TCGA-GV-A3JX-01 18 2578034 2578034 G C NDC80 Missense_Mutation p.D124H 0.03 deleterious(0) probably_damaging(0.965) TCGA-GV-A3JX-01 18 28588292 28588292 G A DSC3 Missense_Mutation p.S488L 0.17 tolerated(0.06) benign(0.023) TCGA-GV-A3JX-01 18 28972175 28972175 A G DSG4 Missense_Mutation p.I293V 0.14 tolerated(0.08) benign(0.297) TCGA-GV-A3JX-01 18 2921615 2921615 G A LPIN2 Silent p.F786F 0.03 TCGA-GV-A3JX-01 18 5489114 5489114 C A EPB41L3 Silent p.A23A 0.33 TCGA-GV-A3JX-01 18 58038604 58038604 C T MC4R Missense_Mutation p.D327N 0.62 tolerated_low_confidence(0.51) benign(0.166) TCGA-GV-A3JX-01 18 77089190 77089190 G C ATP9B Missense_Mutation p.R608T 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3JX-01 18 9570582 9570582 C T PPP4R1 Silent p.T382T 0.67 TCGA-GV-A3JX-01 19 11833886 11833886 C G ZNF823 Missense_Mutation p.E155Q 0.14 tolerated(0.08) possibly_damaging(0.558) TCGA-GV-A3JX-01 19 17405223 17405223 C A ABHD8 Missense_Mutation p.M341I 0.10 tolerated(0.22) benign(0.029) TCGA-GV-A3JX-01 19 20975353 20975353 C A ZNF66 Missense_Mutation p.F13L 0.38 deleterious(0.01) probably_damaging(0.979) TCGA-GV-A3JX-01 19 23941635 23941635 G T ZNF681 5'UTR 0.41 TCGA-GV-A3JX-01 19 31039136 31039136 G A ZNF536 Silent p.S870S 0.41 TCGA-GV-A3JX-01 19 3733748 3733748 C G TJP3 Intron 0.74 TCGA-GV-A3JX-01 19 3982540 3982540 C G EEF2 Intron 0.52 TCGA-GV-A3JX-01 19 4028756 4028756 G C PIAS4 Missense_Mutation p.K237N 0.19 deleterious(0) probably_damaging(0.962) TCGA-GV-A3JX-01 19 41737167 41737167 G C AXL Silent p.L249L 0.05 TCGA-GV-A3JX-01 19 44470975 44470975 C G ZNF221 Missense_Mutation p.Q441E 0.09 deleterious(0.01) possibly_damaging(0.468) TCGA-GV-A3JX-01 19 4511893 4511893 C G PLIN4 Silent p.L679L 0.04 TCGA-GV-A3JX-01 19 45805792 45805792 C T MARK4 Silent p.L695L 0.35 TCGA-GV-A3JX-01 19 45912513 45912513 G C CD3EAP Missense_Mutation p.E429D 0.68 tolerated(0.22) benign(0.029) TCGA-GV-A3JX-01 19 46206179 46206179 C G QPCTL Missense_Mutation p.L341V 0.40 tolerated(0.16) benign(0.304) TCGA-GV-A3JX-01 19 48734962 48734962 C T CARD8 Missense_Mutation p.G166E 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-GV-A3JX-01 19 4944248 4944248 C G UHRF1 RNA 0.10 TCGA-GV-A3JX-01 19 54611778 54611778 C G NDUFA3 3'Flank 0.06 TCGA-GV-A3JX-01 19 55401022 55401022 C T FCAR Silent p.I219I 0.08 TCGA-GV-A3JX-01 19 55401023 55401023 C A FCAR Missense_Mutation p.H220N 0.08 tolerated(1) benign(0) TCGA-GV-A3JX-01 19 55677318 55677318 C T DNAAF3 Missense_Mutation p.E114K 0.47 deleterious(0.01) possibly_damaging(0.85) TCGA-GV-A3JX-01 19 56953734 56953734 A T ZNF667 Missense_Mutation p.N210K 0.10 tolerated(0.42) benign(0.179) TCGA-GV-A3JX-01 19 59011880 59011880 C T SLC27A5 Missense_Mutation p.R459Q 0.10 tolerated(0.13) benign(0.093) TCGA-GV-A3JX-01 19 6732095 6732095 C T GPR108 Silent p.K399K 0.72 TCGA-GV-A3JX-01 19 691855 691855 C T PRSS57 Intron 0.11 TCGA-GV-A3JX-01 1 109339242 109339242 G T STXBP3 Missense_Mutation p.G417V 0.50 deleterious(0) probably_damaging(0.976) TCGA-GV-A3JX-01 1 110050083 110050083 C T AMIGO1 Silent p.S484S 0.07 TCGA-GV-A3JX-01 1 112298569 112298569 C T DDX20 Missense_Mutation p.S8L 0.30 tolerated_low_confidence(0.28) unknown(0) TCGA-GV-A3JX-01 1 117633952 117633952 C G TTF2 Nonsense_Mutation p.S864* 0.35 TCGA-GV-A3JX-01 1 14075874 14075874 G A PRDM2 Missense_Mutation p.E135K 0.09 possibly_damaging(0.803) TCGA-GV-A3JX-01 1 142713875 142713875 G A RP11-417J8.6 RNA 0.25 TCGA-GV-A3JX-01 1 152190860 152190860 G A HRNR Missense_Mutation p.T1082I 0.28 unknown(0) TCGA-GV-A3JX-01 1 152770489 152770489 G A LCE1D Silent p.L73L 0.24 TCGA-GV-A3JX-01 1 152770614 152770614 G A LCE1D Silent p.%3D 0.92 TCGA-GV-A3JX-01 1 153745426 153745426 G A INTS3 Missense_Mutation p.E974K 0.11 deleterious(0.04) possibly_damaging(0.831) TCGA-GV-A3JX-01 1 154557296 154557296 G C ADAR Missense_Mutation p.L1223V 0.27 tolerated(0.06) benign(0.14) TCGA-GV-A3JX-01 1 154571024 154571024 G A ADAR Missense_Mutation p.P547S 0.06 deleterious(0.01) probably_damaging(1) TCGA-GV-A3JX-01 1 158061194 158061194 G A KIRREL Missense_Mutation p.R440H 0.23 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JX-01 1 158517192 158517192 G A OR6Y1 Missense_Mutation p.S235F 0.37 deleterious(0) probably_damaging(0.992) TCGA-GV-A3JX-01 1 159409658 159409658 C T OR10J1 Missense_Mutation p.T37I 0.58 tolerated(0.83) benign(0.033) TCGA-GV-A3JX-01 1 159897219 159897219 G A IGSF9 Silent p.F1152F 0.30 TCGA-GV-A3JX-01 1 169345923 169345923 G C BLZF1 Missense_Mutation p.E58D 0.18 tolerated_low_confidence(0.55) benign(0.002) TCGA-GV-A3JX-01 1 169346158 169346158 G C BLZF1 Missense_Mutation p.E137Q 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-GV-A3JX-01 1 177250771 177250771 T G BRINP2 3'UTR 0.24 TCGA-GV-A3JX-01 1 186326652 186326652 G A TPR Missense_Mutation p.S534L 0.34 benign(0.307) TCGA-GV-A3JX-01 1 19528304 19528304 G A UBR4 Missense_Mutation p.S61L 0.11 benign(0.002) TCGA-GV-A3JX-01 1 19545748 19545748 C G EMC1 3'UTR 0.41 TCGA-GV-A3JX-01 1 19653762 19653762 C T PQLC2 Silent p.F220F 0.44 TCGA-GV-A3JX-01 1 196643008 196643008 G C CFH Missense_Mutation p.G89A 0.06 deleterious(0.05) probably_damaging(0.999) TCGA-GV-A3JX-01 1 201351425 201351425 C G LAD1 Missense_Mutation p.E501D 0.64 deleterious(0) benign(0.03) TCGA-GV-A3JX-01 1 203676348 203676348 G A ATP2B4 Silent p.V437V 0.05 TCGA-GV-A3JX-01 1 207112588 207112588 C T PIGR Silent p.P88P 0.04 TCGA-GV-A3JX-01 1 212911828 212911828 C T NSL1 Silent p.L256L 0.11 TCGA-GV-A3JX-01 1 216462619 216462619 C T USH2A Intron 0.56 TCGA-GV-A3JX-01 1 220174523 220174523 G T EPRS Nonsense_Mutation p.S713* 0.29 TCGA-GV-A3JX-01 1 23648144 23648144 C T HNRNPR Missense_Mutation p.E230K 0.46 deleterious(0.03) possibly_damaging(0.646) TCGA-GV-A3JX-01 1 23767922 23767922 G A ASAP3 Silent p.L264L 0.32 TCGA-GV-A3JX-01 1 34042907 34042907 G A CSMD2 Missense_Mutation p.P2524L 0.43 deleterious(0.01) possibly_damaging(0.656) TCGA-GV-A3JX-01 1 3544178 3544178 G A TPRG1L Silent p.P195P 0.09 TCGA-GV-A3JX-01 1 36520571 36520571 C T AGO3 Missense_Mutation p.H767Y 0.35 tolerated(0.07) benign(0.35) TCGA-GV-A3JX-01 1 36520721 36520721 C T AGO3 Missense_Mutation p.H817Y 0.25 tolerated(0.77) probably_damaging(0.982) TCGA-GV-A3JX-01 1 38265848 38265848 C T MANEAL Silent p.I449I 0.36 TCGA-GV-A3JX-01 1 46080036 46080036 C A NASP Missense_Mutation p.S555Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JX-01 1 6196893 6196893 G C CHD5 Silent p.L823L 0.38 TCGA-GV-A3JX-01 1 84668421 84668421 C T PRKACB Missense_Mutation p.A280V 0.07 tolerated(0.98) benign(0.015) TCGA-GV-A3JX-01 1 86889922 86889922 C T CLCA2 5'UTR 0.35 TCGA-GV-A3JX-01 1 86921014 86921014 C T CLCA2 Missense_Mutation p.S879F 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-GV-A3JX-01 1 97278831 97278831 G C PTBP2 Splice_Site p.X489_splice 0.05 TCGA-GV-A3JX-01 20 23065965 23065965 G T CD93 Missense_Mutation p.P289T 0.06 deleterious(0.02) probably_damaging(0.989) TCGA-GV-A3JX-01 20 279194 279194 G A ZCCHC3 Missense_Mutation p.E323K 0.38 deleterious(0.02) benign(0.371) TCGA-GV-A3JX-01 20 279302 279302 G A ZCCHC3 Missense_Mutation p.E359K 0.42 tolerated(0.35) benign(0.19) TCGA-GV-A3JX-01 20 30412081 30412081 T A MYLK2 Missense_Mutation p.C300S 0.37 tolerated(0.25) probably_damaging(0.964) TCGA-GV-A3JX-01 20 39990291 39990291 G C EMILIN3 Missense_Mutation p.Q640E 0.08 deleterious(0) benign(0.174) TCGA-GV-A3JX-01 20 60909254 60909254 C T LAMA5 Missense_Mutation p.M909I 0.61 benign(0) TCGA-GV-A3JX-01 20 61512799 61512799 C T DIDO1 Silent p.Q1503Q 0.32 TCGA-GV-A3JX-01 20 62038153 62038153 G C KCNQ2 Nonsense_Mutation p.Y821* 0.58 TCGA-GV-A3JX-01 21 10951278 10951278 A G TPTE Missense_Mutation p.V145A 0.08 tolerated(0.08) possibly_damaging(0.585) TCGA-GV-A3JX-01 21 11014966 11014966 G A TPTE RNA 0.61 TCGA-GV-A3JX-01 21 43838515 43838515 G A UBASH3A Silent p.L281L 0.05 TCGA-GV-A3JX-01 21 46032829 46032829 G T KRTAP10-8 3'UTR 0.15 TCGA-GV-A3JX-01 22 24906761 24906761 G C UPB1 Missense_Mutation p.E137Q 0.24 tolerated(0.08) possibly_damaging(0.763) TCGA-GV-A3JX-01 22 33402582 33402582 C T SYN3 Missense_Mutation p.M22I 0.79 deleterious(0.01) unknown(0) TCGA-GV-A3JX-01 22 36695028 36695028 C A MYH9 Nonsense_Mutation p.E1013* 0.72 TCGA-GV-A3JX-01 22 36695058 36695058 C T MYH9 Missense_Mutation p.E1003K 0.77 possibly_damaging(0.493) TCGA-GV-A3JX-01 22 36697638 36697638 C G MYH9 Missense_Mutation p.R858T 0.71 benign(0.002) TCGA-GV-A3JX-01 22 36700183 36700183 C G MYH9 Missense_Mutation p.D750H 0.82 probably_damaging(1) TCGA-GV-A3JX-01 22 39104929 39104929 G A GTPBP1 Missense_Mutation p.G91E 0.72 deleterious(0) possibly_damaging(0.84) TCGA-GV-A3JX-01 22 41568628 41568628 G C EP300 Missense_Mutation p.E1526D 0.23 possibly_damaging(0.672) TCGA-GV-A3JX-01 2 113940993 113940993 C T PSD4 Silent p.F320F 0.04 TCGA-GV-A3JX-01 2 132558472 132558472 C G C2orf27B Missense_Mutation p.E13D 0.08 tolerated_low_confidence(0.09) benign(0) TCGA-GV-A3JX-01 2 160833209 160833209 G A PLA2R1 Silent p.F808F 0.07 TCGA-GV-A3JX-01 2 160840459 160840459 G C PLA2R1 Silent p.L721L 0.05 TCGA-GV-A3JX-01 2 167159806 167159806 T G SCN9A Missense_Mutation p.K232T 0.47 deleterious(0) probably_damaging(0.995) TCGA-GV-A3JX-01 2 169681198 169681198 G A NOSTRIN Silent p.L56L 0.08 TCGA-GV-A3JX-01 2 175431759 175431759 C G WIPF1 Intron 0.12 TCGA-GV-A3JX-01 2 179319144 179319144 C T DFNB59 Silent p.D99D 0.05 TCGA-GV-A3JX-01 2 179438342 179438342 C G TTN Missense_Mutation p.V24173L 0.03 TCGA-GV-A3JX-01 2 179588019 179588019 G T TTN Missense_Mutation p.H7239N 0.28 TCGA-GV-A3JX-01 2 179612864 179612864 G C TTN Intron 0.42 TCGA-GV-A3JX-01 2 191362263 191362263 C G MFSD6 Missense_Mutation p.R664G 0.08 deleterious(0.01) benign(0.175) TCGA-GV-A3JX-01 2 192701216 192701216 C G SDPR Missense_Mutation p.K237N 0.07 deleterious(0) possibly_damaging(0.474) TCGA-GV-A3JX-01 2 198358053 198358053 C G HSPD1 Missense_Mutation p.L288F 0.07 deleterious(0.03) benign(0.376) TCGA-GV-A3JX-01 2 203164980 203164980 C G NOP58 Missense_Mutation p.S431C 0.10 deleterious(0.01) possibly_damaging(0.848) TCGA-GV-A3JX-01 2 208795681 208795681 G A PLEKHM3 Missense_Mutation p.R619W 0.04 deleterious(0) probably_damaging(0.993) TCGA-GV-A3JX-01 2 219508869 219508869 C T ZNF142 Silent p.E790E 0.04 TCGA-GV-A3JX-01 2 219679356 219679356 G C CYP27A1 Missense_Mutation p.R451T 0.08 deleterious(0) probably_damaging(0.948) TCGA-GV-A3JX-01 2 220100580 220100580 C T ANKZF1 Missense_Mutation p.L652F 0.32 deleterious(0) probably_damaging(0.997) TCGA-GV-A3JX-01 2 24550976 24550976 C G ITSN2 5'UTR 0.07 TCGA-GV-A3JX-01 2 38177730 38177730 G A RMDN2 Silent p.K3K 0.89 TCGA-GV-A3JX-01 2 39964200 39964200 C G THUMPD2 Splice_Site p.X396_splice 0.42 TCGA-GV-A3JX-01 2 55563882 55563882 G C CCDC88A Missense_Mutation p.L531V 0.10 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JX-01 2 96048223 96048223 C T KCNIP3 Silent p.F218F 0.53 TCGA-GV-A3JX-01 3 101404687 101404687 C G RPL24 Missense_Mutation p.R56T 0.46 deleterious(0) probably_damaging(0.992) TCGA-GV-A3JX-01 3 10254974 10254974 C G IRAK2 Silent p.V204V 0.16 TCGA-GV-A3JX-01 3 10301923 10301923 A G TATDN2 Missense_Mutation p.R173G 0.51 deleterious(0.03) possibly_damaging(0.535) TCGA-GV-A3JX-01 3 105377987 105377987 C T CBLB Missense_Mutation p.E926K 0.07 tolerated_low_confidence(0.05) benign(0.106) TCGA-GV-A3JX-01 3 124048774 124048774 G T KALRN Missense_Mutation p.D449Y 0.11 deleterious(0.02) possibly_damaging(0.782) TCGA-GV-A3JX-01 3 128973917 128973917 C T COPG1 Silent p.S163S 0.32 TCGA-GV-A3JX-01 3 132347277 132347277 C G ACAD11 Missense_Mutation p.R326T 0.07 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 3 133362970 133362970 T C TOPBP1 Missense_Mutation p.K581R 0.45 tolerated(0.29) benign(0.011) TCGA-GV-A3JX-01 3 13381432 13381432 G A NUP210 Silent p.L1131L 0.42 TCGA-GV-A3JX-01 3 16475483 16475483 G A RFTN1 Silent p.L69L 0.42 TCGA-GV-A3JX-01 3 167248966 167248966 C T WDR49 Missense_Mutation p.E367K 0.04 tolerated(0.08) benign(0.033) TCGA-GV-A3JX-01 3 172229441 172229441 C G TNFSF10 Missense_Mutation p.L93F 0.63 tolerated(0.49) possibly_damaging(0.873) TCGA-GV-A3JX-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.39 deleterious(0.02) probably_damaging(0.959) TCGA-GV-A3JX-01 3 184104518 184104518 C T CHRD Missense_Mutation p.P724L 0.43 tolerated(0.07) probably_damaging(1) TCGA-GV-A3JX-01 3 185985533 185985533 C T DGKG Missense_Mutation p.D384N 0.36 tolerated(0.18) probably_damaging(0.999) TCGA-GV-A3JX-01 3 194062300 194062300 C T CPN2 Missense_Mutation p.E378K 0.38 tolerated(0.4) benign(0.038) TCGA-GV-A3JX-01 3 36874032 36874032 C G TRANK1 Missense_Mutation p.E2304Q 0.51 tolerated(0.11) possibly_damaging(0.623) TCGA-GV-A3JX-01 3 38988357 38988357 G A SCN11A Silent p.F103F 0.33 TCGA-GV-A3JX-01 3 52475599 52475599 G T SEMA3G Missense_Mutation p.L220I 0.05 tolerated(0.07) benign(0.026) TCGA-GV-A3JX-01 3 52859944 52859944 G A ITIH4 Silent p.I239I 0.09 TCGA-GV-A3JX-01 3 89259649 89259649 G A EPHA3 Missense_Mutation p.E265K 0.43 tolerated(0.09) possibly_damaging(0.666) TCGA-GV-A3JX-01 4 104003301 104003301 C A BDH2 Missense_Mutation p.K207N 0.08 deleterious(0) possibly_damaging(0.605) TCGA-GV-A3JX-01 4 106157401 106157401 G C TET2 Missense_Mutation p.D768H 0.41 tolerated(0.08) benign(0.024) TCGA-GV-A3JX-01 4 106158369 106158369 G C TET2 Missense_Mutation p.K1090N 0.55 deleterious(0.05) possibly_damaging(0.623) TCGA-GV-A3JX-01 4 106158415 106158415 G C TET2 Missense_Mutation p.E1106Q 0.43 deleterious(0.01) probably_damaging(0.933) TCGA-GV-A3JX-01 4 141489036 141489036 G - UCP1 Frame_Shift_Del p.Y75Tfs*39 0.32 TCGA-GV-A3JX-01 4 143045828 143045828 C G INPP4B Silent p.L602L 0.39 TCGA-GV-A3JX-01 4 156289749 156289749 G C MAP9 Missense_Mutation p.L233V 0.38 tolerated(0.35) benign(0.023) TCGA-GV-A3JX-01 4 169108570 169108570 T C ANXA10 Silent p.D320D 0.43 TCGA-GV-A3JX-01 4 169815877 169815877 T C PALLD Intron 0.17 TCGA-GV-A3JX-01 4 178274823 178274823 G A NEIL3 Silent p.P467P 0.40 TCGA-GV-A3JX-01 4 183713719 183713719 G A TENM3 Missense_Mutation p.R1965K 0.54 tolerated(0.67) benign(0.364) TCGA-GV-A3JX-01 4 55948135 55948135 G A KDR Missense_Mutation p.S1279F 0.09 deleterious(0.04) benign(0.035) TCGA-GV-A3JX-01 4 69343318 69343318 G A TMPRSS11E Silent p.V313V 0.42 TCGA-GV-A3JX-01 4 7398029 7398029 G C SORCS2 Silent p.L165L 0.35 TCGA-GV-A3JX-01 4 76862017 76862017 G A NAAA Missense_Mutation p.S29L 0.59 tolerated(0.42) benign(0.32) TCGA-GV-A3JX-01 4 89361189 89361189 G C HERC6 Missense_Mutation p.D907H 0.41 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 4 91230198 91230198 C G CCSER1 Missense_Mutation p.Q255E 0.43 deleterious(0.04) possibly_damaging(0.497) TCGA-GV-A3JX-01 5 109026163 109026163 C G MAN2A1 Missense_Mutation p.F15L 0.71 deleterious(0.01) benign(0.04) TCGA-GV-A3JX-01 5 110710590 110710590 C T CAMK4 Missense_Mutation p.R95C 0.19 deleterious(0) probably_damaging(0.99) TCGA-GV-A3JX-01 5 131307298 131307298 G A ACSL6 Missense_Mutation p.A460V 0.88 deleterious(0) benign(0.247) TCGA-GV-A3JX-01 5 139917031 139917031 G A ANKHD1 Missense_Mutation p.R2362Q 0.61 probably_damaging(0.984) TCGA-GV-A3JX-01 5 140553317 140553317 C T PCDHB7 Missense_Mutation p.L301F 0.86 deleterious_low_confidence(0.01) benign(0.333) TCGA-GV-A3JX-01 5 140750463 140750463 C T PCDHGB3 Nonsense_Mutation p.Q168* 0.04 TCGA-GV-A3JX-01 5 150925437 150925437 C A FAT2 Nonsense_Mutation p.E1751* 0.11 TCGA-GV-A3JX-01 5 167991021 167991021 C T PANK3 Missense_Mutation p.E229K 0.12 tolerated(0.24) benign(0.014) TCGA-GV-A3JX-01 5 169623 169623 C T PLEKHG4B Silent p.H859H 0.28 TCGA-GV-A3JX-01 5 178152427 178152427 C G ZNF354A Missense_Mutation p.G69A 0.15 tolerated(0.08) possibly_damaging(0.78) TCGA-GV-A3JX-01 5 178977723 178977723 G A RUFY1 Silent p.R51R 0.90 TCGA-GV-A3JX-01 5 26988259 26988259 A G CDH9 Missense_Mutation p.F61S 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-GV-A3JX-01 5 43527531 43527531 C G PAIP1 Missense_Mutation p.E463Q 0.06 deleterious(0.02) benign(0.365) TCGA-GV-A3JX-01 5 50685565 50685565 G C ISL1 Silent p.L188L 0.15 TCGA-GV-A3JX-01 5 70818248 70818248 G C BDP1 Missense_Mutation p.Q1708H 0.12 tolerated(0.07) possibly_damaging(0.906) TCGA-GV-A3JX-01 5 70820129 70820129 G C BDP1 Missense_Mutation p.Q1917H 0.13 deleterious(0.04) benign(0.046) TCGA-GV-A3JX-01 6 111697267 111697267 G T REV3L Missense_Mutation p.A764D 0.86 tolerated(0.11) benign(0.075) TCGA-GV-A3JX-01 6 111697396 111697396 G C REV3L Missense_Mutation p.S721C 0.86 tolerated(0.09) benign(0.005) TCGA-GV-A3JX-01 6 111697611 111697611 G A REV3L Silent p.I649I 0.92 TCGA-GV-A3JX-01 6 129777521 129777521 G A LAMA2 Missense_Mutation p.G2250E 0.79 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 6 27778040 27778040 C G HIST1H3H Missense_Mutation p.I63M 0.06 deleterious_low_confidence(0.01) benign(0.032) TCGA-GV-A3JX-01 6 31602332 31602332 G C PRRC2A Missense_Mutation p.E1645Q 0.88 unknown(0) TCGA-GV-A3JX-01 6 31855876 31855876 G C EHMT2 Missense_Mutation p.P563A 0.11 tolerated(0.14) benign(0.171) TCGA-GV-A3JX-01 6 32156277 32156277 G A PBX2 Silent p.L100L 0.83 TCGA-GV-A3JX-01 6 36652112 36652113 - C CDKN1A Frame_Shift_Ins p.T80Hfs*9 0.40 TCGA-GV-A3JX-01 7 120906763 120906763 C T CPED1 Missense_Mutation p.S845L 0.06 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JX-01 7 134216707 134216707 G C AKR1B10 Missense_Mutation p.E94D 0.05 deleterious(0.02) benign(0.034) TCGA-GV-A3JX-01 7 148484180 148484180 G A CUL1 Missense_Mutation p.D483N 0.53 deleterious(0.02) benign(0.292) TCGA-GV-A3JX-01 7 150649632 150649632 C T KCNH2 Missense_Mutation p.E480K 0.06 deleterious(0) probably_damaging(0.971) TCGA-GV-A3JX-01 7 151699831 151699831 G A GALNTL5 Missense_Mutation p.E231K 0.48 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 7 151949650 151949650 G T KMT2C Missense_Mutation p.H484N 0.44 possibly_damaging(0.581) TCGA-GV-A3JX-01 7 17833794 17833794 C T SNX13 Missense_Mutation p.E917K 0.48 tolerated(0.08) possibly_damaging(0.775) TCGA-GV-A3JX-01 7 21934388 21934388 C T DNAH11 Missense_Mutation p.R4307C 0.48 possibly_damaging(0.88) TCGA-GV-A3JX-01 7 23340550 23340550 G C MALSU1 Missense_Mutation p.E117Q 0.46 deleterious(0.03) possibly_damaging(0.588) TCGA-GV-A3JX-01 7 2978453 2978453 T A CARD11 Missense_Mutation p.S293C 0.04 tolerated(0.07) benign(0.008) TCGA-GV-A3JX-01 7 31890295 31890295 C T PDE1C Missense_Mutation p.E331K 0.07 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 7 37960519 37960519 C T EPDR1 5'UTR 0.50 TCGA-GV-A3JX-01 7 50531017 50531017 G A DDC Missense_Mutation p.S452F 0.50 deleterious(0.04) probably_damaging(0.986) TCGA-GV-A3JX-01 7 5568878 5568878 C G ACTB Missense_Mutation p.E93Q 0.04 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-GV-A3JX-01 7 84671602 84671602 C G SEMA3D Splice_Site p.X288_splice 0.47 TCGA-GV-A3JX-01 8 103358508 103358508 C T UBR5 Missense_Mutation p.G231E 0.29 deleterious(0) probably_damaging(0.994) TCGA-GV-A3JX-01 8 103358578 103358578 C T UBR5 Missense_Mutation p.E208K 0.33 deleterious(0) probably_damaging(0.949) TCGA-GV-A3JX-01 8 103373849 103373849 C T UBR5 Missense_Mutation p.R23Q 0.34 deleterious(0.01) possibly_damaging(0.78) TCGA-GV-A3JX-01 8 105436556 105436556 A C DPYS Missense_Mutation p.I385S 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-GV-A3JX-01 8 105509596 105509596 C T LRP12 Missense_Mutation p.C395Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JX-01 8 110984590 110984593 ACTT - KCNV1 Frame_Shift_Del p.S296Gfs*18 0.36 TCGA-GV-A3JX-01 8 124413412 124413412 G A ATAD2 5'Flank 0.05 TCGA-GV-A3JX-01 8 33454844 33454844 C T DUSP26 Missense_Mutation p.E64K 0.87 deleterious(0) possibly_damaging(0.696) TCGA-GV-A3JX-01 8 48761858 48761858 C A PRKDC Missense_Mutation p.M2378I 0.09 benign(0.02) TCGA-GV-A3JX-01 8 59522183 59522183 G A NSMAF Nonsense_Mutation p.Q254* 0.45 TCGA-GV-A3JX-01 8 73849046 73849046 C G KCNB2 Missense_Mutation p.H486D 0.09 deleterious(0) possibly_damaging(0.551) TCGA-GV-A3JX-01 8 75761397 75761397 G T PI15 Missense_Mutation p.C229F 0.43 deleterious(0) probably_damaging(0.994) TCGA-GV-A3JX-01 8 89180039 89180039 A T MMP16 Missense_Mutation p.S190T 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-GV-A3JX-01 9 106882409 106882409 G A SMC2 Missense_Mutation p.E700K 0.46 tolerated(1) benign(0) TCGA-GV-A3JX-01 9 107367631 107367631 G A OR13C2 Missense_Mutation p.S93F 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-GV-A3JX-01 9 120476771 120476771 C G TLR4 Missense_Mutation p.L789V 0.48 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JX-01 9 128677988 128677988 G T PBX3 Nonsense_Mutation p.E100* 0.48 TCGA-GV-A3JX-01 9 129642198 129642198 C G ZBTB34 Missense_Mutation p.Q170E 0.46 tolerated(0.72) benign(0.028) TCGA-GV-A3JX-01 9 129642324 129642324 G C ZBTB34 Missense_Mutation p.E212Q 0.11 tolerated(0.35) possibly_damaging(0.63) TCGA-GV-A3JX-01 9 129643203 129643203 G C ZBTB34 3'UTR 0.17 TCGA-GV-A3JX-01 9 130280190 130280190 G C FAM129B Missense_Mutation p.P207R 0.52 tolerated(0.06) benign(0.315) TCGA-GV-A3JX-01 9 131023520 131023520 C T GOLGA2 Missense_Mutation p.E424K 0.09 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 9 131346753 131346753 G C SPTAN1 Missense_Mutation p.E796Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JX-01 9 131348070 131348070 G A SPTAN1 Silent p.L868L 0.29 TCGA-GV-A3JX-01 9 131348091 131348091 G A SPTAN1 Silent p.L875L 0.37 TCGA-GV-A3JX-01 9 136917464 136917464 G A BRD3 Silent p.F105F 0.08 TCGA-GV-A3JX-01 9 139973451 139973451 G A UAP1L1 Missense_Mutation p.A232T 0.52 deleterious(0.01) probably_damaging(0.983) TCGA-GV-A3JX-01 9 140137804 140137804 C G TUBB4B Missense_Mutation p.F378L 0.31 deleterious_low_confidence(0.01) benign(0.277) TCGA-GV-A3JX-01 9 35555321 35555321 G A RUSC2 Missense_Mutation p.R760K 0.49 tolerated(0.22) benign(0.002) TCGA-GV-A3JX-01 9 35555344 35555344 G A RUSC2 Missense_Mutation p.E768K 0.50 tolerated(0.74) benign(0.242) TCGA-GV-A3JX-01 9 35560379 35560379 G A RUSC2 Missense_Mutation p.E1248K 0.31 tolerated(0.38) possibly_damaging(0.524) TCGA-GV-A3JX-01 9 35560391 35560391 G A RUSC2 Missense_Mutation p.E1252K 0.39 tolerated(0.27) benign(0.075) TCGA-GV-A3JX-01 9 434934 434934 G C DOCK8 Missense_Mutation p.E1680Q 0.24 deleterious(0.01) possibly_damaging(0.682) TCGA-GV-A3JX-01 9 5534978 5534978 G A PDCD1LG2 Missense_Mutation p.E97K 0.39 deleterious(0) benign(0.038) TCGA-GV-A3JX-01 9 841870 841870 C G DMRT1 Missense_Mutation p.S11C 0.33 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-GV-A3JX-01 9 8499822 8499822 C T PTPRD Missense_Mutation p.R716H 0.38 deleterious(0) probably_damaging(0.98) TCGA-GV-A3JX-01 9 86900922 86900922 G T SLC28A3 Missense_Mutation p.S462Y 0.36 deleterious(0) possibly_damaging(0.883) TCGA-GV-A3JX-01 9 90296407 90296407 G A DAPK1 Missense_Mutation p.G697E 0.51 deleterious(0.03) benign(0.411) TCGA-GV-A3JX-01 9 95418779 95418779 C T IPPK Missense_Mutation p.V62I 0.41 tolerated(0.3) benign(0.128) TCGA-GV-A3JX-01 X 10427830 10427830 C G MID1 Missense_Mutation p.D435H 0.06 deleterious(0) probably_damaging(0.965) TCGA-GV-A3JX-01 X 129149373 129149373 C G BCORL1 Silent p.L875L 0.13 TCGA-GV-A3JX-01 X 129149590 129149590 C T BCORL1 Nonsense_Mutation p.Q948* 0.13 TCGA-GV-A3JX-01 X 129790591 129790591 C G ENOX2 Missense_Mutation p.E394Q 0.93 deleterious(0.02) probably_damaging(0.997) TCGA-GV-A3JX-01 X 150911830 150911830 C A CNGA2 Silent p.I285I 0.83 TCGA-GV-A3JX-01 X 154227805 154227805 C G F8 Missense_Mutation p.E72Q 0.20 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 X 53617425 53617425 C G HUWE1 Missense_Mutation p.R1377T 0.90 benign(0.132) TCGA-GV-A3JX-01 X 69282408 69282408 C G OTUD6A Missense_Mutation p.L12V 0.20 tolerated(0.81) benign(0.003) TCGA-GV-A3JX-01 X 79936980 79936980 C G BRWD3 Missense_Mutation p.G1505A 0.12 tolerated_low_confidence(0.41) benign(0.084) TCGA-GV-A3JX-01 X 91133134 91133134 A G PCDH11X Missense_Mutation p.D632G 0.30 deleterious(0) probably_damaging(1) TCGA-GV-A3JX-01 X 9863321 9863321 C T SHROOM2 Missense_Mutation p.P458L 0.18 tolerated(0.07) benign(0.012) TCGA-GV-A3JX-01 X 99663097 99663097 C G PCDH19 Missense_Mutation p.E167Q 0.89 tolerated(0.74) benign(0.042) TCGA-GV-A3JZ-01 10 101480768 101480768 G C COX15 Missense_Mutation p.L270V 0.32 deleterious(0) possibly_damaging(0.497) TCGA-GV-A3JZ-01 10 101567904 101567904 A C ABCC2 Missense_Mutation p.K578T 0.15 tolerated(0.08) possibly_damaging(0.817) TCGA-GV-A3JZ-01 10 104629306 104629306 G A AS3MT 5'UTR 0.75 TCGA-GV-A3JZ-01 10 118365052 118365052 G C PNLIPRP1 Missense_Mutation p.E443Q 0.47 tolerated(0.1) benign(0.022) TCGA-GV-A3JZ-01 10 119014792 119014792 C A SLC18A2 Silent p.G235G 0.33 TCGA-GV-A3JZ-01 10 120840222 120840222 G A EIF3A 5'UTR 0.52 TCGA-GV-A3JZ-01 10 127413965 127413965 G C EDRF1 Missense_Mutation p.E197Q 0.28 deleterious(0.01) possibly_damaging(0.907) TCGA-GV-A3JZ-01 10 135038330 135038330 C G KNDC1 Missense_Mutation p.S1729C 0.78 deleterious(0) possibly_damaging(0.765) TCGA-GV-A3JZ-01 10 15326105 15326105 C G FAM171A1 Splice_Site p.X33_splice 0.17 TCGA-GV-A3JZ-01 10 27437904 27437904 G A YME1L1 Silent p.L33L 0.22 TCGA-GV-A3JZ-01 10 27437951 27437951 G A YME1L1 Missense_Mutation p.H18Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-GV-A3JZ-01 10 27437957 27437957 G A YME1L1 Silent p.L16L 0.18 TCGA-GV-A3JZ-01 10 28897142 28897142 C G WAC Nonsense_Mutation p.S316* 0.38 TCGA-GV-A3JZ-01 10 3155563 3155563 G A PFKP Splice_Site p.X409_splice 0.13 TCGA-GV-A3JZ-01 10 34805961 34805961 G A PARD3 Nonsense_Mutation p.Q117* 0.36 TCGA-GV-A3JZ-01 10 55569091 55569091 G A PCDH15 Silent p.R507R 0.24 TCGA-GV-A3JZ-01 10 70733307 70733307 G C DDX21 Missense_Mutation p.E519Q 0.59 deleterious(0) probably_damaging(0.985) TCGA-GV-A3JZ-01 10 70992797 70992797 G T HKDC1 Missense_Mutation p.A135S 0.22 tolerated(0.91) benign(0.045) TCGA-GV-A3JZ-01 10 81052006 81052026 GCAGCAGCGGCAGTGGCAGCA - ZMIZ1 In_Frame_Del p.A287_A293del 0.36 TCGA-GV-A3JZ-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.82 TCGA-GV-A3JZ-01 11 113694393 113694393 C T USP28 Missense_Mutation p.R406Q 0.72 tolerated(0.35) benign(0.016) TCGA-GV-A3JZ-01 11 124518069 124518069 G A SIAE Missense_Mutation p.S242F 0.48 tolerated(0.58) benign(0.004) TCGA-GV-A3JZ-01 11 1264396 1264396 C T MUC5B Missense_Mutation p.P2096S 0.62 unknown(0) TCGA-GV-A3JZ-01 11 1272679 1272679 G A MUC5B Missense_Mutation p.V4857M 0.18 unknown(0) TCGA-GV-A3JZ-01 11 128936700 128936700 G C ARHGAP32 Missense_Mutation p.L185V 0.14 deleterious(0) probably_damaging(0.992) TCGA-GV-A3JZ-01 11 130785702 130785702 G C SNX19 Missense_Mutation p.L45V 0.21 deleterious(0) probably_damaging(0.991) TCGA-GV-A3JZ-01 11 134113161 134113161 G C VPS26B Missense_Mutation p.E232Q 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-GV-A3JZ-01 11 17172072 17172072 G A PIK3C2A Nonsense_Mutation p.Q434* 0.19 TCGA-GV-A3JZ-01 11 32705116 32705116 G C CCDC73 Missense_Mutation p.S132C 0.81 deleterious(0) probably_damaging(0.948) TCGA-GV-A3JZ-01 11 4616239 4616239 C G OR52I1 Nonsense_Mutation p.S324* 0.21 TCGA-GV-A3JZ-01 11 46529801 46529801 G C AMBRA1 Missense_Mutation p.S670C 0.25 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-GV-A3JZ-01 11 47236651 47236651 C T DDB2 5'UTR 0.70 TCGA-GV-A3JZ-01 11 51412330 51412330 T C OR4A5 Silent p.Q22Q 0.21 TCGA-GV-A3JZ-01 11 59271357 59271357 C T OR4D11 Silent p.L103L 0.64 TCGA-GV-A3JZ-01 11 59560641 59560641 C T STX3 Missense_Mutation p.S179F 0.59 deleterious(0.02) possibly_damaging(0.772) TCGA-GV-A3JZ-01 11 60702234 60702234 G A TMEM132A Missense_Mutation p.E613K 0.63 deleterious(0) probably_damaging(0.954) TCGA-GV-A3JZ-01 11 62066506 62066506 C T SCGB1D4 5'UTR 0.41 TCGA-GV-A3JZ-01 11 62293224 62293224 C G AHNAK Missense_Mutation p.D2889H 0.22 probably_damaging(0.993) TCGA-GV-A3JZ-01 11 62293741 62293741 C T AHNAK Silent p.L2716L 0.24 TCGA-GV-A3JZ-01 11 62293851 62293851 C G AHNAK Missense_Mutation p.D2680H 0.25 probably_damaging(0.993) TCGA-GV-A3JZ-01 11 62295310 62295310 C G AHNAK Missense_Mutation p.L2193F 0.23 probably_damaging(0.999) TCGA-GV-A3JZ-01 11 62327634 62327634 C G EEF1G Missense_Mutation p.K354N 0.68 deleterious(0.03) probably_damaging(0.93) TCGA-GV-A3JZ-01 11 62389426 62389426 G A B3GAT3 5'UTR 0.23 TCGA-GV-A3JZ-01 11 63449079 63449079 C T RTN3 5'UTR 0.18 TCGA-GV-A3JZ-01 11 63742235 63742235 C G AP000721.4 Missense_Mutation p.S28W 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-GV-A3JZ-01 11 70281143 70281143 G A CTTN Missense_Mutation p.E473K 0.23 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 11 76506762 76506762 C T TSKU Silent p.F34F 0.25 TCGA-GV-A3JZ-01 11 76507100 76507100 C T TSKU Missense_Mutation p.S147L 0.17 deleterious(0.04) possibly_damaging(0.625) TCGA-GV-A3JZ-01 11 8008809 8008809 T C EIF3F 5'UTR 0.22 TCGA-GV-A3JZ-01 11 89424091 89424091 C A FOLH1B RNA 0.10 TCGA-GV-A3JZ-01 12 104123937 104123937 A C STAB2 Missense_Mutation p.D1709A 0.39 deleterious(0) probably_damaging(0.914) TCGA-GV-A3JZ-01 12 120875952 120875952 C T COX6A1 Missense_Mutation p.S8L 0.75 tolerated(0.57) unknown(0) TCGA-GV-A3JZ-01 12 123338615 123338615 C T HIP1R Silent p.I201I 0.25 TCGA-GV-A3JZ-01 12 12980212 12980212 A T DDX47 Missense_Mutation p.H380L 0.23 tolerated(0.25) benign(0.002) TCGA-GV-A3JZ-01 12 13243611 13243611 C T GSG1 Missense_Mutation p.E64K 0.37 tolerated(0.35) benign(0.04) TCGA-GV-A3JZ-01 12 132547196 132547196 G A EP400 Missense_Mutation p.G2762S 0.51 probably_damaging(0.931) TCGA-GV-A3JZ-01 12 20803462 20803462 C G PDE3A Missense_Mutation p.I951M 0.49 deleterious(0) probably_damaging(0.991) TCGA-GV-A3JZ-01 12 22408294 22408294 T A ST8SIA1 Missense_Mutation p.K137N 0.52 tolerated(0.08) benign(0.211) TCGA-GV-A3JZ-01 12 25031487 25031487 G A BCAT1 Missense_Mutation p.R175C 0.47 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 12 49447270 49447270 G A KMT2D Silent p.C276C 0.24 TCGA-GV-A3JZ-01 12 50232675 50232675 C T BCDIN3D Missense_Mutation p.E120K 0.25 tolerated(0.52) benign(0) TCGA-GV-A3JZ-01 12 51117053 51117053 C G DIP2B Missense_Mutation p.P1079A 0.28 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 12 51118560 51118560 C T DIP2B Silent p.V1097V 0.16 TCGA-GV-A3JZ-01 12 51121551 51121551 C G DIP2B Missense_Mutation p.L1156V 0.28 deleterious(0.02) probably_damaging(0.982) TCGA-GV-A3JZ-01 12 51319290 51319290 C T METTL7A Missense_Mutation p.L157F 0.32 deleterious(0) probably_damaging(0.952) TCGA-GV-A3JZ-01 12 51585471 51585471 G A POU6F1 Silent p.I156I 0.30 TCGA-GV-A3JZ-01 12 51585498 51585498 G C POU6F1 Missense_Mutation p.I147M 0.29 deleterious(0.03) probably_damaging(0.95) TCGA-GV-A3JZ-01 12 51586129 51586129 G A POU6F1 Silent p.V125V 0.23 TCGA-GV-A3JZ-01 12 51586207 51586207 G A POU6F1 Silent p.V99V 0.26 TCGA-GV-A3JZ-01 12 53345344 53345344 C A KRT18 Missense_Mutation p.A246D 0.28 deleterious(0) benign(0.371) TCGA-GV-A3JZ-01 12 53607440 53607440 C G RARG Missense_Mutation p.M286I 0.57 tolerated(0.06) possibly_damaging(0.834) TCGA-GV-A3JZ-01 12 53607956 53607956 C G RARG Missense_Mutation p.A234P 0.26 tolerated(0.08) probably_damaging(0.986) TCGA-GV-A3JZ-01 12 54394234 54394234 G A HOXC9 Missense_Mutation p.A88T 0.62 tolerated(0.29) benign(0.004) TCGA-GV-A3JZ-01 12 54686942 54686942 G C NFE2 Nonsense_Mutation p.S113* 0.29 TCGA-GV-A3JZ-01 12 56572315 56572315 C G SMARCC2 Missense_Mutation p.E395Q 0.61 tolerated(0.05) benign(0.403) TCGA-GV-A3JZ-01 12 6679803 6679804 GT - CHD4 3'UTR 0.24 TCGA-GV-A3JZ-01 12 67700122 67700122 C G CAND1 Missense_Mutation p.L892V 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-GV-A3JZ-01 12 6976718 6976718 C T TPI1 Silent p.L33L 0.21 TCGA-GV-A3JZ-01 12 7031509 7031509 C G ENO2 Missense_Mutation p.I393M 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GV-A3JZ-01 13 101735186 101735186 C G NALCN Missense_Mutation p.V1247L 0.18 tolerated(0.39) benign(0.09) TCGA-GV-A3JZ-01 13 103275268 103275268 C T TPP2 Missense_Mutation p.S221F 0.16 deleterious(0.01) possibly_damaging(0.664) TCGA-GV-A3JZ-01 13 111340160 111340160 G A CARS2 Missense_Mutation p.T160M 0.26 deleterious(0.01) possibly_damaging(0.908) TCGA-GV-A3JZ-01 13 113814360 113814360 C T PROZ Silent p.L57L 0.23 TCGA-GV-A3JZ-01 13 21955650 21955650 C T ZDHHC20 Missense_Mutation p.S327N 0.71 tolerated(0.28) probably_damaging(0.967) TCGA-GV-A3JZ-01 13 25274960 25274960 C T ATP12A Missense_Mutation p.P600L 0.69 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 13 25671754 25671754 C T PABPC3 Missense_Mutation p.T473M 0.16 tolerated(0.1) benign(0.018) TCGA-GV-A3JZ-01 13 26788716 26788716 C T RNF6 Missense_Mutation p.E435K 0.24 deleterious(0.03) benign(0.068) TCGA-GV-A3JZ-01 13 32911868 32911868 G C BRCA2 Missense_Mutation p.E1126Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 13 32912648 32912648 G T BRCA2 Missense_Mutation p.D1386Y 0.22 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 13 32913201 32913201 G C BRCA2 Missense_Mutation p.R1570T 0.15 deleterious(0.01) possibly_damaging(0.802) TCGA-GV-A3JZ-01 13 32914175 32914175 G A BRCA2 Missense_Mutation p.E1895K 0.16 tolerated(1) benign(0.009) TCGA-GV-A3JZ-01 13 32914223 32914223 G A BRCA2 Missense_Mutation p.D1911N 0.21 tolerated(0.29) benign(0.012) TCGA-GV-A3JZ-01 13 78163292 78163292 C T SCEL Missense_Mutation p.H187Y 0.15 tolerated(0.05) probably_damaging(0.92) TCGA-GV-A3JZ-01 13 78163298 78163298 C T SCEL Missense_Mutation p.P189S 0.16 tolerated(0.08) benign(0.396) TCGA-GV-A3JZ-01 13 96238358 96238358 C T DZIP1 Missense_Mutation p.E751K 0.26 tolerated(0.08) probably_damaging(0.939) TCGA-GV-A3JZ-01 14 105242100 105242100 G A AKT1 Silent p.D108D 0.72 TCGA-GV-A3JZ-01 14 105419487 105419487 C T AHNAK2 Silent p.K767K 0.65 TCGA-GV-A3JZ-01 14 24606976 24606976 G A PSME1 Silent p.E120E 0.39 TCGA-GV-A3JZ-01 14 24727513 24727513 G A TGM1 Silent p.A460A 0.40 TCGA-GV-A3JZ-01 14 32560834 32560834 C G ARHGAP5 Nonsense_Mutation p.S320* 0.43 TCGA-GV-A3JZ-01 14 35182587 35182587 C G CFL2 Missense_Mutation p.D62H 0.44 tolerated(0.3) benign(0.01) TCGA-GV-A3JZ-01 14 45693269 45693269 C T MIS18BP1 Missense_Mutation p.E841K 0.28 tolerated(0.32) benign(0.103) TCGA-GV-A3JZ-01 14 50735964 50735964 C G L2HGDH Missense_Mutation p.D275H 0.42 tolerated(0.07) possibly_damaging(0.653) TCGA-GV-A3JZ-01 14 52477650 52477650 G A NID2 Silent p.V1222V 0.35 TCGA-GV-A3JZ-01 14 60585115 60585115 G C PCNXL4 Missense_Mutation p.L315F 0.27 tolerated(0.1) benign(0.013) TCGA-GV-A3JZ-01 14 64545285 64545285 G C SYNE2 Missense_Mutation p.Q3708H 0.38 probably_damaging(0.999) TCGA-GV-A3JZ-01 14 64680977 64680977 G C SYNE2 Missense_Mutation p.Q6374H 0.44 possibly_damaging(0.885) TCGA-GV-A3JZ-01 14 64694187 64694187 G A SYNE2 3'Flank 0.42 TCGA-GV-A3JZ-01 14 64749721 64749721 G C ESR2 5'UTR 0.47 TCGA-GV-A3JZ-01 14 77580381 77580381 C T CIPC Missense_Mutation p.S307L 0.34 tolerated(0.35) benign(0.001) TCGA-GV-A3JZ-01 14 78397944 78397944 C G ADCK1 Silent p.L430L 0.35 TCGA-GV-A3JZ-01 15 102358647 102358647 C G OR4F15 Missense_Mutation p.F86L 0.20 tolerated_low_confidence(0.11) benign(0.047) TCGA-GV-A3JZ-01 15 23261093 23261093 G A GOLGA8I Missense_Mutation p.M256I 0.09 tolerated(0.09) possibly_damaging(0.748) TCGA-GV-A3JZ-01 15 25615955 25615955 C G UBE3A Missense_Mutation p.E459Q 0.23 tolerated(0.2) possibly_damaging(0.54) TCGA-GV-A3JZ-01 15 31619856 31619856 C G KLF13 Silent p.L147L 0.33 TCGA-GV-A3JZ-01 15 34130198 34130198 C A RYR3 Missense_Mutation p.P4006Q 0.41 probably_damaging(1) TCGA-GV-A3JZ-01 15 40566413 40566424 CCCCAGTGCAAG - PAK6 In_Frame_Del p.P606_A609del 0.56 TCGA-GV-A3JZ-01 15 41339643 41339643 C G INO80 Missense_Mutation p.E900Q 0.55 tolerated(0.14) possibly_damaging(0.756) TCGA-GV-A3JZ-01 15 41816160 41816160 C T RPAP1 Missense_Mutation p.E749K 0.35 deleterious(0.03) possibly_damaging(0.587) TCGA-GV-A3JZ-01 15 42132996 42132996 G C PLA2G4B Missense_Mutation p.D313H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-GV-A3JZ-01 15 43814803 43814803 G C MAP1A Missense_Mutation p.E378Q 0.73 possibly_damaging(0.765) TCGA-GV-A3JZ-01 15 45457117 45457117 C G DUOX1 3'UTR 0.49 TCGA-GV-A3JZ-01 15 50757369 50757369 G A USP8 Missense_Mutation p.E223K 0.25 tolerated(0.12) probably_damaging(0.985) TCGA-GV-A3JZ-01 15 58838000 58838000 G C LIPC Missense_Mutation p.D212H 0.59 deleterious(0) probably_damaging(0.991) TCGA-GV-A3JZ-01 15 62212771 62212771 G A VPS13C Missense_Mutation p.H2380Y 0.62 tolerated(0.3) benign(0.001) TCGA-GV-A3JZ-01 15 62254674 62254674 C A VPS13C Nonsense_Mutation p.E1167* 0.56 TCGA-GV-A3JZ-01 15 63893794 63893794 G A FBXL22 Missense_Mutation p.R218K 0.69 deleterious_low_confidence(0) benign(0.14) TCGA-GV-A3JZ-01 15 64980894 64980894 C G OAZ2 3'UTR 0.14 TCGA-GV-A3JZ-01 15 67477081 67477081 C G SMAD3 Silent p.L296L 0.21 TCGA-GV-A3JZ-01 15 74032703 74032703 G A C15orf59 Missense_Mutation p.T146M 0.26 tolerated(0.09) benign(0.003) TCGA-GV-A3JZ-01 15 75092810 75092810 G C CSK Missense_Mutation p.E174Q 0.29 tolerated(0.56) probably_damaging(0.937) TCGA-GV-A3JZ-01 15 75932413 75932413 C T IMP3 Missense_Mutation p.V33M 0.27 deleterious(0) benign(0.277) TCGA-GV-A3JZ-01 15 77750747 77750747 G C HMG20A Intron 0.17 TCGA-GV-A3JZ-01 15 81282044 81282044 C A MESDC2 Missense_Mutation p.G30V 0.32 tolerated(0.57) benign(0.001) TCGA-GV-A3JZ-01 15 90764303 90764303 C G SEMA4B Missense_Mutation p.F191L 0.68 deleterious(0.02) possibly_damaging(0.452) TCGA-GV-A3JZ-01 15 91423349 91423349 C T FURIN Missense_Mutation p.R468W 0.19 deleterious(0) benign(0.248) TCGA-GV-A3JZ-01 16 21128567 21128567 G C DNAH3 Missense_Mutation p.Q591E 0.06 tolerated(0.62) benign(0.001) TCGA-GV-A3JZ-01 16 21262055 21262055 G T ANKS4B Missense_Mutation p.G390C 0.06 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 16 2237255 2237255 C A CASKIN1 Silent p.V249V 0.26 TCGA-GV-A3JZ-01 16 23724503 23724503 C T ERN2 Silent p.A50A 0.62 TCGA-GV-A3JZ-01 16 28145186 28145186 C T XPO6 Silent p.L504L 0.59 TCGA-GV-A3JZ-01 16 3076366 3076366 G C THOC6 Missense_Mutation p.R121S 0.27 tolerated(0.53) benign(0.012) TCGA-GV-A3JZ-01 16 30775620 30775620 C G RNF40 Missense_Mutation p.S188C 0.20 deleterious(0) probably_damaging(0.922) TCGA-GV-A3JZ-01 16 30776275 30776275 C G RNF40 Silent p.L222L 0.17 TCGA-GV-A3JZ-01 16 31191502 31191502 C G FUS 5'UTR 0.07 TCGA-GV-A3JZ-01 16 48286132 48286132 C G LONP2 Missense_Mutation p.F108L 0.53 deleterious(0.01) possibly_damaging(0.872) TCGA-GV-A3JZ-01 16 57731954 57731954 G A CCDC135 Missense_Mutation p.M31I 0.42 tolerated_low_confidence(0.26) unknown(0) TCGA-GV-A3JZ-01 16 66423281 66423281 A C CDH5 Missense_Mutation p.K213Q 0.30 tolerated(0.35) benign(0.021) TCGA-GV-A3JZ-01 16 66431938 66431938 G A CDH5 Missense_Mutation p.E472K 0.41 tolerated(0.21) benign(0.206) TCGA-GV-A3JZ-01 16 677451 677451 C T RAB40C Silent p.F225F 0.24 TCGA-GV-A3JZ-01 16 68325477 68325477 C T SLC7A6 Missense_Mutation p.T312M 0.46 tolerated(0.21) possibly_damaging(0.531) TCGA-GV-A3JZ-01 16 68389659 68389659 G C PRMT7 Missense_Mutation p.E562Q 0.56 deleterious(0) probably_damaging(0.973) TCGA-GV-A3JZ-01 16 69368866 69368866 G C COG8 Nonsense_Mutation p.S324* 0.30 TCGA-GV-A3JZ-01 16 69370435 69370435 C T COG8 Silent p.R186R 0.20 TCGA-GV-A3JZ-01 16 69370440 69370440 C A COG8 Nonsense_Mutation p.E185* 0.22 TCGA-GV-A3JZ-01 16 69373450 69373450 C T COG8 Silent p.A2A 0.37 TCGA-GV-A3JZ-01 16 89349651 89349653 GAG AA ANKRD11 Frame_Shift_Del p.S1100Lfs*218 0.20 TCGA-GV-A3JZ-01 16 89352493 89352493 G A ANKRD11 Silent p.L282L 0.48 TCGA-GV-A3JZ-01 16 89627875 89627875 G C RPL13 Intron 0.39 TCGA-GV-A3JZ-01 17 1690794 1690794 C G SMYD4 Missense_Mutation p.V548L 0.14 tolerated(0.14) benign(0.037) TCGA-GV-A3JZ-01 17 27011877 27011877 C G SUPT6H Missense_Mutation p.F795L 0.68 deleterious(0) benign(0.086) TCGA-GV-A3JZ-01 17 27038749 27038749 G A PROCA1 5'UTR 0.42 TCGA-GV-A3JZ-01 17 30678846 30678846 A G ZNF207 Missense_Mutation p.Q28R 0.45 deleterious(0.01) benign(0.015) TCGA-GV-A3JZ-01 17 34937963 34937963 G A GGNBP2 Missense_Mutation p.E404K 0.38 tolerated(0.27) benign(0.002) TCGA-GV-A3JZ-01 17 36875796 36875796 C T MLLT6 Missense_Mutation p.R657W 0.32 tolerated(0.19) unknown(0) TCGA-GV-A3JZ-01 17 37822334 37822334 C T TCAP Missense_Mutation p.S159F 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3JZ-01 17 38130640 38130640 T G GSDMA Missense_Mutation p.L289R 0.13 deleterious(0) probably_damaging(0.995) TCGA-GV-A3JZ-01 17 40004197 40004197 G C KLHL10 Missense_Mutation p.D489H 0.43 deleterious(0.01) probably_damaging(0.948) TCGA-GV-A3JZ-01 17 4876991 4876991 C T CAMTA2 Nonsense_Mutation p.W720* 0.14 TCGA-GV-A3JZ-01 17 4937171 4937171 C G SLC52A1 Missense_Mutation p.V205L 0.13 tolerated(0.6) benign(0.005) TCGA-GV-A3JZ-01 17 60493508 60493508 A G EFCAB3 Missense_Mutation p.T431A 0.44 deleterious(0) possibly_damaging(0.904) TCGA-GV-A3JZ-01 17 61678640 61678640 C T TACO1 Silent p.V66V 0.39 TCGA-GV-A3JZ-01 17 62543775 62543775 G C SMURF2 Missense_Mutation p.L672V 0.49 deleterious(0) possibly_damaging(0.892) TCGA-GV-A3JZ-01 17 66535515 66535515 C T FAM20A Missense_Mutation p.E442K 0.18 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 17 71391400 71391400 G A SDK2 Silent p.I1162I 0.14 TCGA-GV-A3JZ-01 17 72860373 72860373 G A FDXR Missense_Mutation p.S343F 0.41 deleterious(0.02) benign(0.05) TCGA-GV-A3JZ-01 17 7330189 7330189 C T C17orf74 Silent p.V293V 0.14 TCGA-GV-A3JZ-01 17 73998377 73998377 C T CDK3 Missense_Mutation p.R122W 0.49 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 17 74396299 74396299 C T UBE2O Missense_Mutation p.E362K 0.38 deleterious(0.04) probably_damaging(0.98) TCGA-GV-A3JZ-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.91 TCGA-GV-A3JZ-01 17 78449360 78449360 G T NPTX1 Silent p.I201I 0.36 TCGA-GV-A3JZ-01 17 79287597 79287597 G A TMEM105 Nonsense_Mutation p.R82* 0.53 TCGA-GV-A3JZ-01 17 79650893 79650894 - G ARL16 5'UTR 0.17 TCGA-GV-A3JZ-01 17 8045717 8045717 C T PER1 Missense_Mutation p.E1107K 0.97 tolerated(0.12) probably_damaging(0.994) TCGA-GV-A3JZ-01 17 8048196 8048196 C G PER1 Silent p.L778L 0.95 TCGA-GV-A3JZ-01 17 9808346 9808346 C T RCVRN Missense_Mutation p.S51N 0.30 tolerated(0.09) benign(0.001) TCGA-GV-A3JZ-01 17 9808390 9808390 C A RCVRN Silent p.L36L 0.21 TCGA-GV-A3JZ-01 18 10672800 10672800 C A PIEZO2 Missense_Mutation p.W2631C 0.09 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JZ-01 18 13092445 13092445 C T CEP192 Missense_Mutation p.S2058L 0.15 deleterious(0) possibly_damaging(0.897) TCGA-GV-A3JZ-01 18 18625257 18625257 G A ROCK1 Missense_Mutation p.H196Y 0.16 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 18 22806745 22806745 C T ZNF521 Silent p.K379K 0.19 TCGA-GV-A3JZ-01 18 23612474 23612474 A T SS18 Silent p.G373G 0.26 TCGA-GV-A3JZ-01 18 33243615 33243615 C T GALNT1 Missense_Mutation p.H55Y 0.48 tolerated(0.57) benign(0.002) TCGA-GV-A3JZ-01 18 46287980 46287980 G A CTIF Missense_Mutation p.A433T 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-GV-A3JZ-01 18 47101864 47101864 C T LIPG Nonsense_Mutation p.Q233* 0.41 TCGA-GV-A3JZ-01 18 47777950 47777950 C G CCDC11 Silent p.L226L 0.35 TCGA-GV-A3JZ-01 18 67992252 67992252 G A SOCS6 Silent p.V116V 0.24 TCGA-GV-A3JZ-01 19 1037770 1037770 G C CNN2 Missense_Mutation p.Q267H 0.36 tolerated(0.14) probably_damaging(0.995) TCGA-GV-A3JZ-01 19 10934516 10934516 G A DNM2 Missense_Mutation p.D612N 0.45 tolerated(0.09) benign(0.284) TCGA-GV-A3JZ-01 19 10934530 10934530 G C DNM2 Missense_Mutation p.W616C 0.43 deleterious(0) probably_damaging(0.996) TCGA-GV-A3JZ-01 19 1095363 1095363 C T POLR2E 5'UTR 0.44 TCGA-GV-A3JZ-01 19 12474396 12474396 G C ZNF442 Missense_Mutation p.S17C 0.05 deleterious(0.04) benign(0.129) TCGA-GV-A3JZ-01 19 12767436 12767436 G A MAN2B1 Silent p.S531S 0.60 TCGA-GV-A3JZ-01 19 1278781 1278781 G A C19orf24 3'UTR 0.41 TCGA-GV-A3JZ-01 19 1278787 1278787 G C C19orf24 3'UTR 0.39 TCGA-GV-A3JZ-01 19 1360523 1360523 G C MUM1 Missense_Mutation p.E202D 0.35 tolerated(1) benign(0.007) TCGA-GV-A3JZ-01 19 15164702 15164702 G T CASP14 Silent p.L112L 0.36 TCGA-GV-A3JZ-01 19 16652774 16652774 C G CHERP Missense_Mutation p.E36Q 0.33 tolerated(0.25) probably_damaging(0.982) TCGA-GV-A3JZ-01 19 16653168 16653168 C G CHERP Missense_Mutation p.D8H 0.26 deleterious(0.04) benign(0.319) TCGA-GV-A3JZ-01 19 17831750 17831750 C T MAP1S Missense_Mutation p.R42W 0.06 deleterious(0) possibly_damaging(0.897) TCGA-GV-A3JZ-01 19 18731388 18731388 C G TMEM59L 3'UTR 0.40 TCGA-GV-A3JZ-01 19 19990939 19990939 G A ZNF253 Missense_Mutation p.M70I 0.13 tolerated(0.11) possibly_damaging(0.838) TCGA-GV-A3JZ-01 19 21606279 21606279 C T ZNF493 Missense_Mutation p.S273F 0.84 deleterious(0.02) possibly_damaging(0.569) TCGA-GV-A3JZ-01 19 21607244 21607244 C T ZNF493 Missense_Mutation p.H595Y 0.78 deleterious(0.04) probably_damaging(0.997) TCGA-GV-A3JZ-01 19 21607722 21607722 C T ZNF493 Missense_Mutation p.S754L 0.62 deleterious(0.01) probably_damaging(0.943) TCGA-GV-A3JZ-01 19 21607760 21607760 C T ZNF493 Missense_Mutation p.H767Y 0.62 tolerated_low_confidence(0.06) benign(0.001) TCGA-GV-A3JZ-01 19 23544994 23544994 C G ZNF91 Missense_Mutation p.E263Q 0.39 deleterious(0.04) possibly_damaging(0.469) TCGA-GV-A3JZ-01 19 30934886 30934886 C T ZNF536 Silent p.F139F 0.80 TCGA-GV-A3JZ-01 19 33621086 33621086 G A GPATCH1 3'UTR 0.36 TCGA-GV-A3JZ-01 19 34884965 34884965 C T GPI Silent p.F363F 0.46 TCGA-GV-A3JZ-01 19 37676214 37676214 C G ZNF585B Missense_Mutation p.G742A 0.04 deleterious(0) possibly_damaging(0.82) TCGA-GV-A3JZ-01 19 38633219 38633219 C T SIPA1L3 Silent p.V1134V 0.52 TCGA-GV-A3JZ-01 19 39055650 39055650 G A RYR1 Missense_Mutation p.E4226K 0.35 benign(0.068) TCGA-GV-A3JZ-01 19 40411790 40411790 G C FCGBP Missense_Mutation p.Q1280E 0.48 possibly_damaging(0.687) TCGA-GV-A3JZ-01 19 418997 418997 C G SHC2 Missense_Mutation p.Q560H 0.46 deleterious(0.03) benign(0.03) TCGA-GV-A3JZ-01 19 42796294 42796294 G C CIC Silent p.L981L 0.55 TCGA-GV-A3JZ-01 19 43358399 43358399 T G PSG10P RNA 0.06 TCGA-GV-A3JZ-01 19 44514657 44514657 G C ZNF230 Missense_Mutation p.D156H 0.39 deleterious(0.02) possibly_damaging(0.863) TCGA-GV-A3JZ-01 19 44571265 44571265 C G ZNF223 Missense_Mutation p.F428L 0.46 deleterious(0.02) benign(0.042) TCGA-GV-A3JZ-01 19 45175238 45175238 C T CEACAM19 Missense_Mutation p.S12L 0.44 tolerated(0.2) benign(0.03) TCGA-GV-A3JZ-01 19 46178078 46178078 G A GIPR Nonsense_Mutation p.W209* 0.26 TCGA-GV-A3JZ-01 19 49392787 49392787 C T TULP2 Missense_Mutation p.E206K 0.32 tolerated(0.11) benign(0.079) TCGA-GV-A3JZ-01 19 49458170 49458170 G T BAX 5'Flank 0.16 TCGA-GV-A3JZ-01 19 52785369 52785369 C T ZNF766 Silent p.H8H 0.46 TCGA-GV-A3JZ-01 19 52824897 52824897 T A ZNF480 Missense_Mutation p.F132I 0.15 deleterious(0.05) benign(0.182) TCGA-GV-A3JZ-01 19 52934671 52934671 C T ZNF534 5'UTR 0.60 TCGA-GV-A3JZ-01 19 53959484 53959484 G C ZNF761 RNA 0.10 TCGA-GV-A3JZ-01 19 57642777 57642777 G A USP29 Missense_Mutation p.E912K 0.44 tolerated(0.18) benign(0.001) TCGA-GV-A3JZ-01 19 58772798 58772798 G A ZNF544 Missense_Mutation p.G276R 0.13 tolerated(0.27) benign(0.013) TCGA-GV-A3JZ-01 19 58772799 58772799 G T ZNF544 Missense_Mutation p.G276V 0.13 deleterious(0.05) possibly_damaging(0.81) TCGA-GV-A3JZ-01 19 7807878 7807878 G A CD209 3'UTR 0.51 TCGA-GV-A3JZ-01 19 7964521 7964521 C T LRRC8E Nonsense_Mutation p.Q372* 0.26 TCGA-GV-A3JZ-01 19 7992542 7992542 C T TIMM44 Silent p.P413P 0.55 TCGA-GV-A3JZ-01 1 10529339 10529339 C G DFFA Missense_Mutation p.E65Q 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-GV-A3JZ-01 1 11132177 11132177 C A EXOSC10 Nonsense_Mutation p.E737* 0.33 TCGA-GV-A3JZ-01 1 114128143 114128143 G A MAGI3 Missense_Mutation p.E230K 0.30 deleterious(0) benign(0.381) TCGA-GV-A3JZ-01 1 115147614 115147614 C T DENND2C Silent p.E532E 0.50 TCGA-GV-A3JZ-01 1 115147649 115147649 C T DENND2C Missense_Mutation p.D521N 0.40 deleterious(0) possibly_damaging(0.9) TCGA-GV-A3JZ-01 1 118640379 118640379 C T SPAG17 Missense_Mutation p.E309K 0.27 tolerated(0.24) probably_damaging(0.997) TCGA-GV-A3JZ-01 1 12020784 12020784 G A PLOD1 Missense_Mutation p.E353K 0.60 tolerated(0.07) benign(0.036) TCGA-GV-A3JZ-01 1 1268136 1268136 C T TAS1R3 Nonsense_Mutation p.Q409* 0.21 TCGA-GV-A3JZ-01 1 144857625 144857625 G A PDE4DIP Silent p.I2143I 0.11 TCGA-GV-A3JZ-01 1 144871718 144871718 C A PDE4DIP Missense_Mutation p.M1748I 0.07 tolerated(0.13) benign(0.248) TCGA-GV-A3JZ-01 1 144882662 144882662 G C PDE4DIP Silent p.L1119L 0.11 TCGA-GV-A3JZ-01 1 151065682 151065682 G T GABPB2 Silent p.V97V 0.35 TCGA-GV-A3JZ-01 1 151258795 151258795 G C ZNF687 Missense_Mutation p.D10H 0.61 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JZ-01 1 152191810 152191810 G A HRNR Silent p.H765H 0.16 TCGA-GV-A3JZ-01 1 152193146 152193146 G C HRNR Missense_Mutation p.S320C 0.18 unknown(0) TCGA-GV-A3JZ-01 1 152193539 152193539 G T HRNR Missense_Mutation p.S189Y 0.17 unknown(0) TCGA-GV-A3JZ-01 1 152279563 152279563 C T FLG Missense_Mutation p.R2600K 0.11 possibly_damaging(0.584) TCGA-GV-A3JZ-01 1 154130098 154130098 G C NUP210L 5'Flank 0.21 TCGA-GV-A3JZ-01 1 155234440 155234440 G A CLK2 Silent p.I352I 0.19 TCGA-GV-A3JZ-01 1 155290535 155290535 C T RUSC1 5'Flank 0.22 TCGA-GV-A3JZ-01 1 155630385 155630385 G T YY1AP1 Nonsense_Mutation p.S577* 0.62 TCGA-GV-A3JZ-01 1 155891202 155891202 C T KIAA0907 Silent p.P410P 0.18 TCGA-GV-A3JZ-01 1 155903521 155903521 G A KIAA0907 Missense_Mutation p.S53L 0.30 tolerated(0.18) benign(0.021) TCGA-GV-A3JZ-01 1 156230257 156230257 G C SMG5 Silent p.L756L 0.23 TCGA-GV-A3JZ-01 1 156247764 156247764 C G SMG5 Missense_Mutation p.W83C 0.16 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 1 156247778 156247778 C T SMG5 Missense_Mutation p.E79K 0.19 deleterious(0) probably_damaging(0.997) TCGA-GV-A3JZ-01 1 156279057 156279057 G A CCT3 Missense_Mutation p.S524L 0.16 deleterious(0.02) possibly_damaging(0.644) TCGA-GV-A3JZ-01 1 156698908 156698908 C T RRNAD1 Silent p.I4I 0.22 TCGA-GV-A3JZ-01 1 158549345 158549345 T A OR10X1 Missense_Mutation p.L115F 0.15 tolerated(0.2) benign(0.093) TCGA-GV-A3JZ-01 1 158747168 158747168 G A OR6N2 Silent p.L86L 0.04 TCGA-GV-A3JZ-01 1 158985757 158985757 G C IFI16 Missense_Mutation p.E121Q 0.27 tolerated(0.07) possibly_damaging(0.754) TCGA-GV-A3JZ-01 1 159161793 159161793 G A CADM3 Silent p.V86V 0.61 TCGA-GV-A3JZ-01 1 159161862 159161862 G A CADM3 Silent p.K109K 0.60 TCGA-GV-A3JZ-01 1 160267134 160267134 C G COPA Missense_Mutation p.Q763H 0.10 tolerated(0.32) benign(0.043) TCGA-GV-A3JZ-01 1 161130796 161130796 G A USP21 Missense_Mutation p.M122I 0.10 deleterious_low_confidence(0.04) benign(0) TCGA-GV-A3JZ-01 1 161789498 161789498 G C ATF6 Missense_Mutation p.E329Q 0.06 deleterious(0) probably_damaging(0.986) TCGA-GV-A3JZ-01 1 167096654 167096654 C A DUSP27 Nonsense_Mutation p.C762* 0.74 TCGA-GV-A3JZ-01 1 169847945 169847945 G A SCYL3 Missense_Mutation p.R61C 0.74 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 1 171174608 171174608 G T FMO2 Missense_Mutation p.D340Y 0.25 deleterious(0) possibly_damaging(0.815) TCGA-GV-A3JZ-01 1 171292305 171292305 G C FMO4 Missense_Mutation p.D99H 0.44 tolerated(0.08) probably_damaging(0.926) TCGA-GV-A3JZ-01 1 171293307 171293307 G C FMO4 Missense_Mutation p.D118H 0.33 deleterious(0) probably_damaging(0.983) TCGA-GV-A3JZ-01 1 171293376 171293376 G C FMO4 Missense_Mutation p.D141H 0.36 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JZ-01 1 17323611 17323611 C T ATP13A2 Missense_Mutation p.E367K 0.65 deleterious(0.03) benign(0.364) TCGA-GV-A3JZ-01 1 175087808 175087808 C G TNN Missense_Mutation p.S833C 0.75 deleterious(0) probably_damaging(0.989) TCGA-GV-A3JZ-01 1 181019244 181019244 G C MR1 Silent p.L142L 0.45 TCGA-GV-A3JZ-01 1 193028361 193028361 G A UCHL5 Silent p.L10L 0.22 TCGA-GV-A3JZ-01 1 19497282 19497282 G C UBR4 Missense_Mutation p.S1206C 0.66 possibly_damaging(0.617) TCGA-GV-A3JZ-01 1 197398672 197398672 G T CRB1 Nonsense_Mutation p.E924* 0.31 TCGA-GV-A3JZ-01 1 200376276 200376276 G C ZNF281 Missense_Mutation p.S853C 0.31 deleterious(0.01) probably_damaging(0.936) TCGA-GV-A3JZ-01 1 202917512 202917512 C T ADIPOR1 Missense_Mutation p.E60K 0.18 tolerated(0.11) benign(0.002) TCGA-GV-A3JZ-01 1 2125221 2125221 C T C1orf86 Silent p.G109G 0.35 TCGA-GV-A3JZ-01 1 216465553 216465553 C G USH2A Missense_Mutation p.G602R 0.17 probably_damaging(1) TCGA-GV-A3JZ-01 1 216850701 216850701 G A ESRRG Silent p.D68D 0.32 TCGA-GV-A3JZ-01 1 220089088 220089088 C A SLC30A10 Missense_Mutation p.L387F 0.15 tolerated(0.25) benign(0.024) TCGA-GV-A3JZ-01 1 223566977 223566977 G A C1orf65 Missense_Mutation p.E54K 0.73 deleterious(0.01) probably_damaging(0.934) TCGA-GV-A3JZ-01 1 228248020 228248020 C G WNT3A 3'UTR 0.23 TCGA-GV-A3JZ-01 1 230415081 230415081 G C GALNT2 Silent p.L531L 0.22 TCGA-GV-A3JZ-01 1 235383127 235383127 C A ARID4B Nonsense_Mutation p.E522* 0.21 TCGA-GV-A3JZ-01 1 235383646 235383646 C T ARID4B Missense_Mutation p.E460K 0.18 tolerated(0.06) benign(0.427) TCGA-GV-A3JZ-01 1 235611710 235611710 C G TBCE Silent p.L482L 0.19 TCGA-GV-A3JZ-01 1 241663770 241663770 G C FH Missense_Mutation p.L453V 0.65 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 1 242253146 242253146 C A PLD5 3'UTR 0.16 TCGA-GV-A3JZ-01 1 24387794 24387794 C T MYOM3 Missense_Mutation p.E1314K 0.24 deleterious(0.02) benign(0.097) TCGA-GV-A3JZ-01 1 244006500 244006500 G A AKT3 5'UTR 0.21 TCGA-GV-A3JZ-01 1 247275334 247275334 C T C1orf229 Missense_Mutation p.E65K 0.44 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-GV-A3JZ-01 1 247920818 247920818 C T OR1C1 Missense_Mutation p.M297I 0.56 tolerated(0.26) benign(0.024) TCGA-GV-A3JZ-01 1 2526322 2526322 G A MMEL1 Missense_Mutation p.S532L 0.54 tolerated(0.06) possibly_damaging(0.703) TCGA-GV-A3JZ-01 1 25599110 25599110 C T RHD Silent p.L24L 0.16 TCGA-GV-A3JZ-01 1 38450421 38450421 C T SF3A3 Missense_Mutation p.E112K 0.30 tolerated(0.37) possibly_damaging(0.589) TCGA-GV-A3JZ-01 1 39782127 39782127 G C MACF1 Missense_Mutation p.E1177Q 0.62 possibly_damaging(0.854) TCGA-GV-A3JZ-01 1 43637293 43637293 G A EBNA1BP2 Silent p.F115F 0.57 TCGA-GV-A3JZ-01 1 44402443 44402443 C A ARTN 3'UTR 0.25 TCGA-GV-A3JZ-01 1 51913720 51913720 T A EPS15 Missense_Mutation p.T217S 0.24 tolerated(0.86) benign(0.131) TCGA-GV-A3JZ-01 1 6520233 6520233 C T ESPN 3'UTR 0.45 TCGA-GV-A3JZ-01 1 68152235 68152235 G A GADD45A Missense_Mutation p.E117K 0.68 tolerated(0.66) benign(0.036) TCGA-GV-A3JZ-01 1 70897772 70897772 G T CTH Missense_Mutation p.G244V 0.27 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 1 75037069 75037069 G C C1orf173 Nonsense_Mutation p.S1442* 0.25 TCGA-GV-A3JZ-01 1 7902801 7902801 G C PER3 Missense_Mutation p.E1198Q 0.25 deleterious_low_confidence(0.05) possibly_damaging(0.727) TCGA-GV-A3JZ-01 20 18535017 18535017 G A SEC23B Missense_Mutation p.E711K 0.53 deleterious(0) possibly_damaging(0.507) TCGA-GV-A3JZ-01 20 20177385 20177385 T G C20orf26 Missense_Mutation p.Y588D 0.24 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 20 20257987 20257987 G C C20orf26 Missense_Mutation p.G894A 0.29 deleterious(0.02) probably_damaging(0.939) TCGA-GV-A3JZ-01 20 25203528 25203528 G C ENTPD6 Missense_Mutation p.R367T 0.61 deleterious(0.03) benign(0.139) TCGA-GV-A3JZ-01 20 25459797 25459797 C T NINL Missense_Mutation p.E655K 0.21 deleterious(0.03) benign(0.279) TCGA-GV-A3JZ-01 20 2639436 2639436 G C IDH3B Missense_Mutation p.I373M 0.40 deleterious(0.01) benign(0.02) TCGA-GV-A3JZ-01 20 2640753 2640753 G C IDH3B Missense_Mutation p.L280V 0.41 tolerated(0.56) probably_damaging(0.97) TCGA-GV-A3JZ-01 20 31996252 31996252 G A SNTA1 3'UTR 0.25 TCGA-GV-A3JZ-01 20 32210977 32210977 G C CBFA2T2 Missense_Mutation p.Q198H 0.20 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 20 33364229 33364229 C T NCOA6 Silent p.Q86Q 0.26 TCGA-GV-A3JZ-01 20 33891825 33891825 C T UQCC1 Silent p.G271G 0.56 TCGA-GV-A3JZ-01 20 40127937 40127937 C T CHD6 Missense_Mutation p.E305K 0.73 tolerated(0.64) benign(0.003) TCGA-GV-A3JZ-01 20 42694696 42694696 C A TOX2 Silent p.P435P 0.65 TCGA-GV-A3JZ-01 20 45875047 45875047 C G ZMYND8 Missense_Mutation p.E663D 0.21 tolerated_low_confidence(0.26) benign(0.009) TCGA-GV-A3JZ-01 20 49354553 49354553 G A PARD6B Missense_Mutation p.D76N 0.65 deleterious(0.04) possibly_damaging(0.838) TCGA-GV-A3JZ-01 20 57768706 57768706 G A ZNF831 Missense_Mutation p.E878K 0.13 tolerated(0.66) benign(0.003) TCGA-GV-A3JZ-01 20 60509192 60509192 G C CDH4 Missense_Mutation p.D820H 0.16 deleterious(0) probably_damaging(0.992) TCGA-GV-A3JZ-01 20 60921967 60921967 A C LAMA5 Splice_Site p.X358_splice 0.38 TCGA-GV-A3JZ-01 20 60968519 60968519 G A CABLES2 Missense_Mutation p.S286L 0.23 tolerated(0.06) benign(0.154) TCGA-GV-A3JZ-01 21 30339132 30339132 C G LTN1 Missense_Mutation p.E607Q 0.65 tolerated(0.17) benign(0.026) TCGA-GV-A3JZ-01 21 30934029 30934029 C G GRIK1 Missense_Mutation p.E758Q 0.59 deleterious(0) probably_damaging(0.946) TCGA-GV-A3JZ-01 21 31066295 31066295 C T GRIK1 Missense_Mutation p.R69Q 0.28 deleterious(0.02) benign(0.339) TCGA-GV-A3JZ-01 21 34926321 34926321 C T SON Missense_Mutation p.S1595F 0.33 possibly_damaging(0.485) TCGA-GV-A3JZ-01 21 35468011 35468011 C T SLC5A3 Silent p.L172L 0.26 TCGA-GV-A3JZ-01 21 42830734 42830734 G A MX1 3'UTR 0.27 TCGA-GV-A3JZ-01 21 44323929 44323929 G C NDUFV3 Missense_Mutation p.Q269H 0.32 deleterious(0.03) probably_damaging(0.988) TCGA-GV-A3JZ-01 21 46841517 46841517 C G COL18A1-AS1 RNA 0.22 TCGA-GV-A3JZ-01 21 46876059 46876059 C G COL18A1 Silent p.L205L 0.24 TCGA-GV-A3JZ-01 21 47538527 47538527 G - COL6A2 Splice_Site p.X374_splice 0.36 TCGA-GV-A3JZ-01 22 17579721 17579721 G A IL17RA Missense_Mutation p.E123K 0.19 deleterious(0.01) probably_damaging(1) TCGA-GV-A3JZ-01 22 18354600 18354600 C T MICAL3 Intron 0.55 TCGA-GV-A3JZ-01 22 19196576 19196576 C G CLTCL1 Missense_Mutation p.E1100Q 0.24 tolerated(0.2) probably_damaging(1) TCGA-GV-A3JZ-01 22 20230351 20230351 G C RTN4R Missense_Mutation p.T102S 0.68 tolerated(0.69) benign(0) TCGA-GV-A3JZ-01 22 21213633 21213633 G A SNAP29 Missense_Mutation p.E79K 0.39 deleterious(0.02) benign(0.426) TCGA-GV-A3JZ-01 22 21333878 21333878 C G AIFM3 Intron 0.41 TCGA-GV-A3JZ-01 22 21828938 21828938 C T TMEM191C 3'Flank 0.41 TCGA-GV-A3JZ-01 22 29738343 29738343 C T AP1B1 Silent p.V489V 0.74 TCGA-GV-A3JZ-01 22 30185085 30185085 C A ASCC2 Nonsense_Mutation p.E731* 0.22 TCGA-GV-A3JZ-01 22 31673068 31673068 C G LIMK2 Missense_Mutation p.S668C 0.21 possibly_damaging(0.902) TCGA-GV-A3JZ-01 22 32616910 32616910 C T SLC5A4 Missense_Mutation p.E589K 0.38 tolerated(0.34) benign(0.118) TCGA-GV-A3JZ-01 22 35947637 35947637 A G RASD2 Missense_Mutation p.K120R 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-GV-A3JZ-01 22 36681357 36681357 C T MYH9 Missense_Mutation p.D1765N 0.23 benign(0.008) TCGA-GV-A3JZ-01 22 36876824 36876824 G C TXN2 Missense_Mutation p.Q21E 0.22 tolerated(0.55) benign(0.001) TCGA-GV-A3JZ-01 22 36900142 36900142 C T FOXRED2 Intron 0.54 TCGA-GV-A3JZ-01 22 36900716 36900716 C T FOXRED2 Missense_Mutation p.E209K 0.59 tolerated(0.4) benign(0.02) TCGA-GV-A3JZ-01 22 39712783 39712783 C G RPL3 Missense_Mutation p.K143N 0.20 deleterious(0.02) possibly_damaging(0.507) TCGA-GV-A3JZ-01 22 40417887 40417887 G A FAM83F Missense_Mutation p.S458N 0.15 tolerated_low_confidence(0.64) benign(0.357) TCGA-GV-A3JZ-01 22 41537064 41537064 C G EP300 Missense_Mutation p.H631D 0.52 unknown(0) TCGA-GV-A3JZ-01 22 42607575 42607575 G C TCF20 Missense_Mutation p.S1246C 0.25 probably_damaging(0.998) TCGA-GV-A3JZ-01 22 43032768 43032768 G A CYB5R3 Missense_Mutation p.L69F 0.52 deleterious(0) possibly_damaging(0.45) TCGA-GV-A3JZ-01 2 100052376 100052376 C G REV1 Missense_Mutation p.R414T 0.24 deleterious(0.02) benign(0.104) TCGA-GV-A3JZ-01 2 101591943 101591943 G A NPAS2 Missense_Mutation p.E436K 0.37 deleterious(0.03) benign(0.424) TCGA-GV-A3JZ-01 2 101885518 101885518 G C CNOT11 Missense_Mutation p.D419H 0.14 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 2 131520411 131520411 G A AMER3 Missense_Mutation p.D256N 0.53 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 2 141625324 141625324 G C LRP1B Missense_Mutation p.P1472A 0.04 benign(0.004) TCGA-GV-A3JZ-01 2 150071250 150071250 G C LYPD6B 3'UTR 0.80 TCGA-GV-A3JZ-01 2 152296581 152296581 C G RIF1 Silent p.L529L 0.71 TCGA-GV-A3JZ-01 2 152468805 152468805 C G NEB Silent p.L3900L 0.89 TCGA-GV-A3JZ-01 2 166770116 166770116 G T TTC21B Missense_Mutation p.L727I 0.06 deleterious(0.03) possibly_damaging(0.558) TCGA-GV-A3JZ-01 2 176958267 176958267 G A HOXD13 Missense_Mutation p.E217K 0.86 deleterious(0) benign(0.444) TCGA-GV-A3JZ-01 2 189931201 189931201 G A COL5A2 Missense_Mutation p.P493L 0.26 possibly_damaging(0.679) TCGA-GV-A3JZ-01 2 201469496 201469496 G T AOX1 Silent p.L249L 0.68 TCGA-GV-A3JZ-01 2 20251207 20251207 G C LAPTM4A Silent p.V25V 0.47 TCGA-GV-A3JZ-01 2 20251240 20251240 G A LAPTM4A Silent p.F14F 0.47 TCGA-GV-A3JZ-01 2 20405149 20405149 C T SDC1 Missense_Mutation p.D35N 0.31 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 2 204820542 204820542 A T ICOS Missense_Mutation p.K81I 0.31 tolerated(0.25) benign(0.004) TCGA-GV-A3JZ-01 2 204820544 204820544 T C ICOS Missense_Mutation p.F82L 0.31 tolerated(0.33) benign(0.009) TCGA-GV-A3JZ-01 2 209138751 209138751 G A PIKFYVE Intron 0.13 TCGA-GV-A3JZ-01 2 215645993 215645993 G C BARD1 Missense_Mutation p.S202C 0.27 deleterious(0.05) benign(0.02) TCGA-GV-A3JZ-01 2 220432452 220432452 G A OBSL1 Missense_Mutation p.L508F 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-GV-A3JZ-01 2 228205033 228205033 G C MFF Missense_Mutation p.R152T 0.63 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 2 234386116 234386116 G A USP40 Silent p.I1222I 0.24 TCGA-GV-A3JZ-01 2 25990551 25990551 G A ASXL2 Nonsense_Mutation p.Q226* 0.88 TCGA-GV-A3JZ-01 2 27260564 27260564 G A TMEM214 Silent p.K382K 0.18 TCGA-GV-A3JZ-01 2 37366873 37366873 C T EIF2AK2 Silent p.Q139Q 0.18 TCGA-GV-A3JZ-01 2 46986049 46986049 C T SOCS5 Missense_Mutation p.S127F 0.31 deleterious(0.01) benign(0.372) TCGA-GV-A3JZ-01 2 48573386 48573386 G A FOXN2 Silent p.K11K 0.84 TCGA-GV-A3JZ-01 2 54858547 54858547 G A SPTBN1 Missense_Mutation p.M1121I 0.37 tolerated(0.53) benign(0.028) TCGA-GV-A3JZ-01 2 55523009 55523009 G A CCDC88A Nonsense_Mutation p.R1758* 0.42 TCGA-GV-A3JZ-01 2 65217170 65217170 C T SLC1A4 Silent p.L131L 0.89 TCGA-GV-A3JZ-01 2 71730410 71730410 C T DYSF Silent p.F102F 0.88 TCGA-GV-A3JZ-01 2 71776507 71776507 C T DYSF Intron 0.88 TCGA-GV-A3JZ-01 2 74326619 74326619 C T TET3 Missense_Mutation p.R1027W 0.53 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 2 74369455 74369455 C G BOLA3 Missense_Mutation p.E68Q 0.34 tolerated(0.09) possibly_damaging(0.718) TCGA-GV-A3JZ-01 2 74689799 74689799 C G MOGS Missense_Mutation p.E373Q 0.22 deleterious(0.03) probably_damaging(0.982) TCGA-GV-A3JZ-01 2 74689864 74689864 C G MOGS Missense_Mutation p.R351T 0.43 tolerated(0.19) benign(0.016) TCGA-GV-A3JZ-01 3 101038512 101038512 G A IMPG2 Silent p.L84L 0.22 TCGA-GV-A3JZ-01 3 105421029 105421029 G C CBLB Nonsense_Mutation p.S623* 0.27 TCGA-GV-A3JZ-01 3 112358139 112358139 C T CCDC80 Missense_Mutation p.S205N 0.50 tolerated(0.41) benign(0.002) TCGA-GV-A3JZ-01 3 121509013 121509013 C A IQCB1 Nonsense_Mutation p.E346* 0.24 TCGA-GV-A3JZ-01 3 121642098 121642098 G A SLC15A2 Silent p.R329R 0.20 TCGA-GV-A3JZ-01 3 124952313 124952313 C A ZNF148 Missense_Mutation p.E419D 0.19 tolerated(0.74) benign(0.001) TCGA-GV-A3JZ-01 3 12783978 12783978 C G TMEM40 Missense_Mutation p.L110F 0.42 tolerated_low_confidence(0.11) possibly_damaging(0.809) TCGA-GV-A3JZ-01 3 130292929 130292929 G A COL6A6 Missense_Mutation p.R1036K 0.19 tolerated(0.21) possibly_damaging(0.578) TCGA-GV-A3JZ-01 3 133670119 133670119 G A SLCO2A1 Missense_Mutation p.S265L 0.47 deleterious(0) possibly_damaging(0.9) TCGA-GV-A3JZ-01 3 135820922 135820922 T C PPP2R3A Missense_Mutation p.Y1001H 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-GV-A3JZ-01 3 142682017 142682017 G A PAQR9 Silent p.F54F 0.58 TCGA-GV-A3JZ-01 3 149220466 149220466 G C TM4SF4 Missense_Mutation p.D199H 0.61 deleterious_low_confidence(0.01) unknown(0) TCGA-GV-A3JZ-01 3 15094937 15094937 C G MRPS25 Missense_Mutation p.K93N 0.23 deleterious(0) possibly_damaging(0.87) TCGA-GV-A3JZ-01 3 15094945 15094945 C G MRPS25 Missense_Mutation p.E91Q 0.23 deleterious(0.02) probably_damaging(0.968) TCGA-GV-A3JZ-01 3 164733762 164733762 C T SI Missense_Mutation p.G1289E 0.20 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 3 168834306 168834306 C A MECOM Missense_Mutation p.D329Y 0.53 tolerated(0.06) probably_damaging(1) TCGA-GV-A3JZ-01 3 169539844 169539844 C T LRRIQ4 Silent p.F45F 0.21 TCGA-GV-A3JZ-01 3 176755921 176755921 G C TBL1XR1 Missense_Mutation p.L363V 0.48 deleterious(0) possibly_damaging(0.861) TCGA-GV-A3JZ-01 3 184099750 184099750 C G CHRD Nonsense_Mutation p.S214* 0.28 TCGA-GV-A3JZ-01 3 186501389 186501389 T C EIF4A2 5'UTR 0.62 TCGA-GV-A3JZ-01 3 195063325 195063325 C G ACAP2 Missense_Mutation p.E135Q 0.74 deleterious(0) possibly_damaging(0.905) TCGA-GV-A3JZ-01 3 195780393 195780393 G A TFRC Missense_Mutation p.R646C 0.52 deleterious(0.04) probably_damaging(1) TCGA-GV-A3JZ-01 3 19975088 19975088 C A EFHB Silent p.G141G 0.22 TCGA-GV-A3JZ-01 3 38622656 38622656 C G SCN5A Missense_Mutation p.Q998H 0.42 tolerated(0.12) benign(0) TCGA-GV-A3JZ-01 3 49698105 49698105 G A BSN Missense_Mutation p.E2943K 0.26 unknown(0) TCGA-GV-A3JZ-01 3 49842359 49842359 C A FAM212A Missense_Mutation p.A268E 0.24 deleterious(0) possibly_damaging(0.772) TCGA-GV-A3JZ-01 3 50314055 50314055 C T LSMEM2 5'Flank 0.62 TCGA-GV-A3JZ-01 3 52019910 52019910 G C ACY1 Missense_Mutation p.E103Q 0.29 tolerated(0.38) benign(0.006) TCGA-GV-A3JZ-01 3 53905383 53905383 C A ACTR8 Silent p.L481L 0.52 TCGA-GV-A3JZ-01 3 58631354 58631354 C G FAM3D Splice_Site p.X49_splice 0.61 TCGA-GV-A3JZ-01 3 72890342 72890342 C G SHQ1 Missense_Mutation p.E114Q 0.37 tolerated(0.2) benign(0.212) TCGA-GV-A3JZ-01 3 74344388 74344388 C G CNTN3 Splice_Site p.X801_splice 0.61 TCGA-GV-A3JZ-01 3 98510824 98510824 C T ST3GAL6 Missense_Mutation p.S299F 0.30 tolerated(0.05) benign(0.25) TCGA-GV-A3JZ-01 4 119951529 119951529 G A SYNPO2 Silent p.T533T 0.53 TCGA-GV-A3JZ-01 4 125591379 125591379 G A ANKRD50 Missense_Mutation p.S1018F 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-GV-A3JZ-01 4 166243231 166243231 G T KLHL2 3'UTR 0.23 TCGA-GV-A3JZ-01 4 166243232 166243232 C A KLHL2 3'UTR 0.23 TCGA-GV-A3JZ-01 4 184580130 184580130 G A RWDD4 5'UTR 0.24 TCGA-GV-A3JZ-01 4 2172884 2172884 C G POLN Missense_Mutation p.E467Q 0.64 deleterious(0.02) probably_damaging(0.987) TCGA-GV-A3JZ-01 4 38138896 38138896 G A TBC1D1 Silent p.R1149R 0.07 TCGA-GV-A3JZ-01 4 40104488 40104488 G A N4BP2 Silent p.V341V 0.38 TCGA-GV-A3JZ-01 4 4199382 4199382 G A OTOP1 Silent p.L393L 0.47 TCGA-GV-A3JZ-01 4 62849139 62849139 C T LPHN3 Silent p.F950F 0.36 TCGA-GV-A3JZ-01 4 7840265 7840265 C A AFAP1 Nonsense_Mutation p.E238* 0.05 TCGA-GV-A3JZ-01 4 79437102 79437102 G A FRAS1 Missense_Mutation p.D3442N 0.27 possibly_damaging(0.901) TCGA-GV-A3JZ-01 4 844837 844837 C G GAK Missense_Mutation p.D1182H 0.25 deleterious(0) probably_damaging(0.986) TCGA-GV-A3JZ-01 4 85741262 85741262 G A WDFY3 Missense_Mutation p.L557F 0.19 deleterious(0) probably_damaging(0.98) TCGA-GV-A3JZ-01 4 90857267 90857267 T C MMRN1 Silent p.D812D 0.24 TCGA-GV-A3JZ-01 4 99325699 99325699 G C RAP1GDS1 Missense_Mutation p.E238Q 0.26 tolerated(0.2) benign(0.398) TCGA-GV-A3JZ-01 5 112312532 112312532 C G DCP2 5'UTR 0.36 TCGA-GV-A3JZ-01 5 133536147 133536147 C T PPP2CA Missense_Mutation p.R206H 0.76 tolerated(0.13) benign(0.005) TCGA-GV-A3JZ-01 5 139494256 139494256 C T PURA Missense_Mutation p.R164C 0.27 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JZ-01 5 140048746 140048746 G A WDR55 Missense_Mutation p.R248H 0.10 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 5 140175513 140175513 G A PCDHA2 Missense_Mutation p.A322T 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-GV-A3JZ-01 5 140574242 140574242 C T PCDHB10 Missense_Mutation p.S706L 0.51 deleterious_low_confidence(0) benign(0.209) TCGA-GV-A3JZ-01 5 140616175 140616175 C A PCDHB18 RNA 0.07 TCGA-GV-A3JZ-01 5 140953172 140953172 G A DIAPH1 Missense_Mutation p.P749S 0.30 unknown(0) TCGA-GV-A3JZ-01 5 142435652 142435652 G T ARHGAP26 Splice_Site p.X478_splice 0.37 TCGA-GV-A3JZ-01 5 149676860 149676860 G A ARSI Missense_Mutation p.R543C 0.31 deleterious_low_confidence(0.03) benign(0.332) TCGA-GV-A3JZ-01 5 158126068 158126068 C G EBF1 3'UTR 0.83 TCGA-GV-A3JZ-01 5 167642220 167642220 G A TENM2 Missense_Mutation p.E1341K 0.82 tolerated(0.06) possibly_damaging(0.867) TCGA-GV-A3JZ-01 5 170319554 170319554 C G RANBP17 Silent p.L140L 0.27 TCGA-GV-A3JZ-01 5 170610195 170610195 G A RANBP17 Silent p.V630V 0.95 TCGA-GV-A3JZ-01 5 38947495 38947495 C T RICTOR Silent p.L1395L 0.51 TCGA-GV-A3JZ-01 5 5239991 5239991 G A ADAMTS16 Missense_Mutation p.E826K 0.18 deleterious(0) probably_damaging(0.999) TCGA-GV-A3JZ-01 5 5460802 5460802 C T KIAA0947 Missense_Mutation p.S452F 0.19 deleterious(0) possibly_damaging(0.627) TCGA-GV-A3JZ-01 5 71494799 71494799 C T MAP1B Nonsense_Mutation p.Q1873* 0.82 TCGA-GV-A3JZ-01 5 98236691 98236691 T C CHD1 Missense_Mutation p.D228G 0.41 tolerated(0.3) benign(0.001) TCGA-GV-A3JZ-01 6 109802504 109802504 C G ZBTB24 Missense_Mutation p.K242N 0.34 tolerated(0.15) benign(0.022) TCGA-GV-A3JZ-01 6 112400898 112400898 C T TUBE1 Missense_Mutation p.R129K 0.41 deleterious(0.04) probably_damaging(0.985) TCGA-GV-A3JZ-01 6 112400906 112400906 C A TUBE1 Missense_Mutation p.E126D 0.43 tolerated(0.26) benign(0.107) TCGA-GV-A3JZ-01 6 112452258 112452258 C T LAMA4 Missense_Mutation p.D1294N 0.36 tolerated(1) benign(0.006) TCGA-GV-A3JZ-01 6 116757927 116757927 A C DSE Missense_Mutation p.N766H 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GV-A3JZ-01 6 129634083 129634083 A T LAMA2 Missense_Mutation p.K1084N 0.35 tolerated(0.27) benign(0.008) TCGA-GV-A3JZ-01 6 135318567 135318567 C T HBS1L Missense_Mutation p.G256E 0.34 tolerated(0.22) benign(0.356) TCGA-GV-A3JZ-01 6 136882784 136882784 C T MAP3K5 Splice_Site p.X1292_splice 0.36 TCGA-GV-A3JZ-01 6 150174190 150174190 G A LRP11 Silent p.I240I 0.55 TCGA-GV-A3JZ-01 6 152737832 152737832 G A SYNE1 Nonsense_Mutation p.Q1914* 0.28 TCGA-GV-A3JZ-01 6 152765587 152765587 C T SYNE1 Missense_Mutation p.E1266K 0.39 benign(0.008) TCGA-GV-A3JZ-01 6 152768689 152768689 C G SYNE1 Missense_Mutation p.L1191F 0.39 possibly_damaging(0.891) TCGA-GV-A3JZ-01 6 24145869 24145869 G A NRSN1 Missense_Mutation p.E95K 0.18 tolerated(0.12) benign(0.201) TCGA-GV-A3JZ-01 6 25726784 25726784 G A HIST1H2AA 5'UTR 0.04 TCGA-GV-A3JZ-01 6 26184245 26184245 C T HIST1H2BE Silent p.I74I 0.92 TCGA-GV-A3JZ-01 6 26408131 26408131 C G BTN3A1 Missense_Mutation p.I222M 0.94 deleterious(0) probably_damaging(0.985) TCGA-GV-A3JZ-01 6 26505305 26505305 C G BTN1A1 Missense_Mutation p.P194A 0.93 tolerated(1) benign(0.134) TCGA-GV-A3JZ-01 6 27107240 27107240 C G HIST1H4I Missense_Mutation p.I51M 0.56 deleterious(0) probably_damaging(0.941) TCGA-GV-A3JZ-01 6 31591626 31591626 C T PRRC2A Missense_Mutation p.S77L 0.19 unknown(0) TCGA-GV-A3JZ-01 6 33380128 33380128 C T PHF1 Missense_Mutation p.R30W 0.80 deleterious(0) probably_damaging(0.96) TCGA-GV-A3JZ-01 6 36982667 36982667 G A FGD2 Splice_Site p.X295_splice 0.07 TCGA-GV-A3JZ-01 6 37138277 37138277 C T PIM1 5'UTR 0.05 TCGA-GV-A3JZ-01 6 46593206 46593206 C T CYP39A1 Missense_Mutation p.D294N 0.56 tolerated(0.44) benign(0.008) TCGA-GV-A3JZ-01 6 46682224 46682224 A G PLA2G7 Missense_Mutation p.V148A 0.10 deleterious(0) possibly_damaging(0.813) TCGA-GV-A3JZ-01 6 53516582 53516582 C T KLHL31 Nonsense_Mutation p.W573* 0.26 TCGA-GV-A3JZ-01 6 56505039 56505039 G T DST Missense_Mutation p.P261T 0.17 probably_damaging(1) TCGA-GV-A3JZ-01 6 56716381 56716381 G C RP11-472M19.2 Intron 0.30 TCGA-GV-A3JZ-01 6 64416024 64416024 C T PHF3 Missense_Mutation p.A1158V 0.29 deleterious(0.01) possibly_damaging(0.859) TCGA-GV-A3JZ-01 6 70034888 70034888 G A BAI3 Missense_Mutation p.R980K 0.25 deleterious(0.03) possibly_damaging(0.492) TCGA-GV-A3JZ-01 6 73904395 73904395 G A KCNQ5 Missense_Mutation p.R705K 0.49 tolerated(0.18) benign(0.422) TCGA-GV-A3JZ-01 6 74119057 74119057 G A DDX43 Silent p.Q422Q 0.25 TCGA-GV-A3JZ-01 6 7727603 7727603 C T BMP6 Silent p.L139L 0.25 TCGA-GV-A3JZ-01 6 7727750 7727750 C T BMP6 Silent p.L188L 0.40 TCGA-GV-A3JZ-01 6 7891866 7891866 G A TXNDC5 Silent p.V240V 0.21 TCGA-GV-A3JZ-01 6 80223183 80223183 C T LCA5 Missense_Mutation p.E156K 0.50 deleterious(0) possibly_damaging(0.818) TCGA-GV-A3JZ-01 6 88210332 88210332 C G SLC35A1 Missense_Mutation p.Q101E 0.55 deleterious(0) probably_damaging(0.97) TCGA-GV-A3JZ-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.68 deleterious(0) possibly_damaging(0.79) TCGA-GV-A3JZ-01 6 90605283 90605283 C G GJA10 Missense_Mutation p.Q366E 0.57 deleterious(0.03) benign(0.114) TCGA-GV-A3JZ-01 6 90661329 90661329 C T BACH2 Missense_Mutation p.E166K 0.58 tolerated(0.66) benign(0.034) TCGA-GV-A3JZ-01 7 100231073 100231073 C T TFR2 Missense_Mutation p.D194N 0.40 tolerated(0.05) possibly_damaging(0.642) TCGA-GV-A3JZ-01 7 100279283 100279283 C T GIGYF1 3'UTR 0.61 TCGA-GV-A3JZ-01 7 100363105 100363105 C T ZAN Silent p.F1466F 0.37 TCGA-GV-A3JZ-01 7 121942239 121942239 C T FEZF1 Missense_Mutation p.D414N 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-GV-A3JZ-01 7 123092843 123092843 G C IQUB Nonsense_Mutation p.S777* 0.46 TCGA-GV-A3JZ-01 7 127978389 127978389 C T RBM28 Silent p.K152K 0.21 TCGA-GV-A3JZ-01 7 141364706 141364706 C A KIAA1147 Missense_Mutation p.Q367H 0.39 tolerated(0.08) benign(0.262) TCGA-GV-A3JZ-01 7 141765569 141765569 C T MGAM Intron 0.58 TCGA-GV-A3JZ-01 7 144097329 144097329 C T NOBOX Silent p.Q307Q 0.32 TCGA-GV-A3JZ-01 7 150696118 150696118 G A NOS3 Missense_Mutation p.E301K 0.17 deleterious(0.02) benign(0.029) TCGA-GV-A3JZ-01 7 150714325 150714325 G C ATG9B Missense_Mutation p.S696C 0.44 tolerated(0.1) possibly_damaging(0.853) TCGA-GV-A3JZ-01 7 150714331 150714331 G A ATG9B Missense_Mutation p.S694L 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3JZ-01 7 158672547 158672547 C T WDR60 Missense_Mutation p.S249F 0.52 tolerated(0.48) benign(0.001) TCGA-GV-A3JZ-01 7 21840770 21840770 C T DNAH11 Silent p.L3355L 0.23 TCGA-GV-A3JZ-01 7 24681456 24681456 T G MPP6 Missense_Mutation p.L80W 0.09 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 7 27825064 27825064 G C TAX1BP1 Missense_Mutation p.E270Q 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-GV-A3JZ-01 7 33066465 33066465 G A NT5C3A Silent p.I72I 0.16 TCGA-GV-A3JZ-01 7 33644572 33644572 G A BBS9 Missense_Mutation p.E873K 0.43 tolerated_low_confidence(0.25) benign(0.029) TCGA-GV-A3JZ-01 7 39500145 39500145 G A POU6F2 Splice_Site p.X468_splice 0.43 TCGA-GV-A3JZ-01 7 43830958 43830958 A G BLVRA Missense_Mutation p.D82G 0.64 tolerated(0.17) benign(0) TCGA-GV-A3JZ-01 7 44880509 44880509 G A H2AFV Missense_Mutation p.L62F 0.68 deleterious(0) benign(0.431) TCGA-GV-A3JZ-01 7 45142089 45142089 A C TBRG4 Missense_Mutation p.V393G 0.12 deleterious(0) probably_damaging(0.99) TCGA-GV-A3JZ-01 7 4899851 4899851 C G PAPOLB Missense_Mutation p.E530Q 0.55 tolerated(0.1) benign(0.254) TCGA-GV-A3JZ-01 7 50537777 50537777 G C DDC Missense_Mutation p.I378M 0.16 deleterious(0.01) probably_damaging(1) TCGA-GV-A3JZ-01 7 50737442 50737442 G C GRB10 Missense_Mutation p.P161A 0.51 deleterious(0.05) benign(0.001) TCGA-GV-A3JZ-01 7 57188413 57188413 C A ZNF479 Nonsense_Mutation p.G237* 0.11 TCGA-GV-A3JZ-01 7 73474260 73474260 C T ELN Missense_Mutation p.P487S 0.41 unknown(0) TCGA-GV-A3JZ-01 7 76828885 76828885 C G FGL2 Missense_Mutation p.E76Q 0.24 deleterious(0) benign(0.362) TCGA-GV-A3JZ-01 7 82997265 82997265 C T SEMA3E Silent p.Q655Q 0.38 TCGA-GV-A3JZ-01 7 83590682 83590682 G T SEMA3A 3'UTR 0.23 TCGA-GV-A3JZ-01 7 87757967 87757967 G C ADAM22 Silent p.L243L 0.37 TCGA-GV-A3JZ-01 7 92158136 92158136 G A RBM48 Silent p.S3S 0.44 TCGA-GV-A3JZ-01 7 98522777 98522777 G A TRRAP Missense_Mutation p.E956K 0.40 benign(0.306) TCGA-GV-A3JZ-01 7 98534849 98534849 G A TRRAP Silent p.L1394L 0.18 TCGA-GV-A3JZ-01 7 99995535 99995535 G T PILRA Missense_Mutation p.R236M 0.19 deleterious(0) benign(0.346) TCGA-GV-A3JZ-01 8 103572771 103572771 C G ODF1 Missense_Mutation p.Q138E 0.70 tolerated(1) possibly_damaging(0.848) TCGA-GV-A3JZ-01 8 103572958 103572958 C G ODF1 Missense_Mutation p.S200C 0.65 deleterious(0.01) possibly_damaging(0.902) TCGA-GV-A3JZ-01 8 104064968 104064968 C G ATP6V1C1 Missense_Mutation p.Q131E 0.11 deleterious(0.03) probably_damaging(0.992) TCGA-GV-A3JZ-01 8 130789625 130789625 G C GSDMC Missense_Mutation p.S70C 0.32 tolerated(0.06) probably_damaging(0.985) TCGA-GV-A3JZ-01 8 133044290 133044290 C A OC90 Missense_Mutation p.R290I 0.13 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 8 133771110 133771110 G C TMEM71 Missense_Mutation p.Q6E 0.15 deleterious(0.02) possibly_damaging(0.469) TCGA-GV-A3JZ-01 8 144940345 144940345 C T EPPK1 Silent p.V2359V 0.05 TCGA-GV-A3JZ-01 8 144943935 144943935 C G EPPK1 Missense_Mutation p.E1163Q 0.14 probably_damaging(0.915) TCGA-GV-A3JZ-01 8 145535411 145535411 C G HSF1 Missense_Mutation p.S250C 0.21 tolerated(0.09) benign(0.082) TCGA-GV-A3JZ-01 8 24771416 24771416 C T NEFM Missense_Mutation p.S37L 0.47 deleterious(0.01) unknown(0) TCGA-GV-A3JZ-01 8 42611280 42611280 C T CHRNA6 Silent p.L354L 0.58 TCGA-GV-A3JZ-01 8 53062480 53062480 G C ST18 Missense_Mutation p.R622G 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-GV-A3JZ-01 8 53084386 53084386 G A ST18 Silent p.I345I 0.19 TCGA-GV-A3JZ-01 8 55537511 55537511 G A RP1 Missense_Mutation p.G357S 0.27 tolerated(0.13) benign(0.021) TCGA-GV-A3JZ-01 8 55540055 55540055 C T RP1 Missense_Mutation p.P1205S 0.21 tolerated(0.12) benign(0.098) TCGA-GV-A3JZ-01 8 71036267 71036267 C T NCOA2 Missense_Mutation p.S1382N 0.64 tolerated(0.39) benign(0.034) TCGA-GV-A3JZ-01 8 94740514 94740514 T C FAM92A1 Missense_Mutation p.F287L 0.73 tolerated_low_confidence(0.31) benign(0.153) TCGA-GV-A3JZ-01 9 100616407 100616407 G A FOXE1 Missense_Mutation p.E71K 0.45 tolerated(0.07) benign(0.005) TCGA-GV-A3JZ-01 9 108536171 108536171 C T TMEM38B Missense_Mutation p.S229F 0.24 tolerated(0.18) possibly_damaging(0.51) TCGA-GV-A3JZ-01 9 111659293 111659293 G T IKBKAP Missense_Mutation p.H843N 0.18 deleterious(0) probably_damaging(0.991) TCGA-GV-A3JZ-01 9 112003921 112003921 G A EPB41L4B Intron 0.55 TCGA-GV-A3JZ-01 9 115805645 115805645 G A ZFP37 Missense_Mutation p.S418L 0.59 deleterious(0) probably_damaging(0.997) TCGA-GV-A3JZ-01 9 115806039 115806039 G A ZFP37 Nonsense_Mutation p.Q287* 0.55 TCGA-GV-A3JZ-01 9 119461344 119461344 G A TRIM32 Silent p.L441L 0.22 TCGA-GV-A3JZ-01 9 124535708 124535708 G A DAB2IP Silent p.L939L 0.66 TCGA-GV-A3JZ-01 9 129453164 129453164 G T LMX1B Nonsense_Mutation p.E126* 0.34 TCGA-GV-A3JZ-01 9 129455807 129455807 G C LMX1B Missense_Mutation p.R249P 0.54 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 9 129728131 129728131 C A RALGPS1 Missense_Mutation p.S22R 0.19 deleterious(0) probably_damaging(0.998) TCGA-GV-A3JZ-01 9 129958857 129958857 G A RALGPS1 Missense_Mutation p.R381Q 0.28 tolerated(0.32) benign(0.034) TCGA-GV-A3JZ-01 9 130152935 130152935 G T GARNL3 Missense_Mutation p.G920V 0.54 tolerated_low_confidence(0.16) benign(0.031) TCGA-GV-A3JZ-01 9 130265177 130265177 G A LRSAM1 Silent p.%3D 0.50 TCGA-GV-A3JZ-01 9 130489656 130489656 C T TTC16 Missense_Mutation p.P559L 0.62 tolerated(0.46) benign(0.01) TCGA-GV-A3JZ-01 9 130636913 130636913 G A AK1 5'UTR 0.26 TCGA-GV-A3JZ-01 9 136531911 136531911 G A SARDH Silent p.F859F 0.19 TCGA-GV-A3JZ-01 9 138606490 138606490 G A KCNT1 Missense_Mutation p.E60K 0.34 deleterious_low_confidence(0.01) benign(0.386) TCGA-GV-A3JZ-01 9 139699278 139699278 C T CCDC183 Intron 0.41 TCGA-GV-A3JZ-01 9 139887394 139887394 G C C9orf142 Silent p.L66L 0.19 TCGA-GV-A3JZ-01 9 20946772 20946772 G A FOCAD Missense_Mutation p.E1210K 0.97 deleterious(0) probably_damaging(0.934) TCGA-GV-A3JZ-01 9 21186998 21186998 G A IFNA4 Missense_Mutation p.S178L 0.87 tolerated(0.06) probably_damaging(0.981) TCGA-GV-A3JZ-01 9 27203074 27203074 C G TEK Missense_Mutation p.N722K 0.11 tolerated(0.98) benign(0.003) TCGA-GV-A3JZ-01 9 33466615 33466615 C T NOL6 Silent p.L681L 0.56 TCGA-GV-A3JZ-01 9 36246323 36246323 C G GNE Missense_Mutation p.M138I 0.14 tolerated(0.22) benign(0.001) TCGA-GV-A3JZ-01 9 36246416 36246416 C G GNE Silent p.V107V 0.11 TCGA-GV-A3JZ-01 9 36249349 36249349 C T GNE Missense_Mutation p.E33K 0.11 deleterious_low_confidence(0) benign(0.116) TCGA-GV-A3JZ-01 9 5772683 5772683 G A KIAA1432 Missense_Mutation p.E1246K 0.12 tolerated(0.09) possibly_damaging(0.575) TCGA-GV-A3JZ-01 9 6015556 6015556 C G RANBP6 Missense_Mutation p.E18Q 0.09 tolerated(1) benign(0.002) TCGA-GV-A3JZ-01 9 90283556 90283556 G C DAPK1 Missense_Mutation p.E656D 0.22 tolerated(0.32) benign(0.004) TCGA-GV-A3JZ-01 9 94843181 94843181 G A SPTLC1 Missense_Mutation p.L109F 0.24 deleterious(0) probably_damaging(1) TCGA-GV-A3JZ-01 X 100088252 100088252 G A CSTF2 Missense_Mutation p.E431K 0.80 tolerated(0.12) benign(0.014) TCGA-GV-A3JZ-01 X 101857861 101857861 G C ARMCX5 Missense_Mutation p.L264F 0.39 tolerated(0.11) probably_damaging(0.997) TCGA-GV-A3JZ-01 X 103267744 103267744 G C H2BFWT Silent p.L163L 0.80 TCGA-GV-A3JZ-01 X 136112978 136112978 C A GPR101 Missense_Mutation p.A286S 0.52 tolerated(0.22) benign(0.021) TCGA-GV-A3JZ-01 X 153044065 153044065 C G PLXNB3 Missense_Mutation p.S1877C 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-GV-A3JZ-01 X 39930340 39930340 C T BCOR Missense_Mutation p.E1042K 0.94 tolerated(0.09) probably_damaging(0.993) TCGA-GV-A3JZ-01 X 46434158 46434158 G A CHST7 Silent p.L264L 0.19 TCGA-GV-A3JZ-01 X 54783526 54783526 G T ITIH6 Missense_Mutation p.P994H 0.43 deleterious(0.01) possibly_damaging(0.674) TCGA-GV-A3JZ-01 X 70521663 70521663 C G ITGB1BP2 Missense_Mutation p.L3V 0.96 tolerated(0.16) benign(0.032) TCGA-GV-A3JZ-01 X 73745728 73745728 G T SLC16A2 Missense_Mutation p.Q390H 0.43 deleterious(0.04) probably_damaging(0.988) TCGA-GV-A3QF-01 10 18292239 18292239 C A SLC39A12 Silent p.I633I 0.46 TCGA-GV-A3QF-01 10 43015119 43015119 T G ZNF37BP RNA 0.28 TCGA-GV-A3QF-01 10 88259960 88259960 C A WAPAL Missense_Mutation p.S347I 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.822) TCGA-GV-A3QF-01 11 116628530 116628530 C A BUD13 Missense_Mutation p.A546S 0.36 deleterious(0.01) probably_damaging(1) TCGA-GV-A3QF-01 11 116628531 116628531 C A BUD13 Missense_Mutation p.M545I 0.35 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QF-01 11 124252689 124252690 - G OR8B2 Frame_Shift_Ins p.L184Pfs*23 0.11 TCGA-GV-A3QF-01 11 132307139 132307139 C T OPCML Missense_Mutation p.R214Q 0.20 tolerated(0.57) benign(0.182) TCGA-GV-A3QF-01 11 20178183 20178183 C T DBX1 Silent p.A242A 0.50 TCGA-GV-A3QF-01 11 5410829 5410829 G T OR51M1 Silent p.L67L 0.21 TCGA-GV-A3QF-01 11 55406051 55406051 C T OR4P4 Missense_Mutation p.S73F 0.32 deleterious(0) probably_damaging(0.97) TCGA-GV-A3QF-01 11 55681672 55681672 G T OR5W2 Silent p.P129P 0.42 TCGA-GV-A3QF-01 11 58979792 58979792 C G MPEG1 Missense_Mutation p.E183Q 0.27 deleterious(0) probably_damaging(0.968) TCGA-GV-A3QF-01 11 64494818 64494818 C A RASGRP2 Nonsense_Mutation p.E596* 0.15 TCGA-GV-A3QF-01 11 64519519 64519519 A G PYGM Missense_Mutation p.Y549H 0.28 tolerated(0.13) benign(0.007) TCGA-GV-A3QF-01 11 65392689 65392689 T C PCNXL3 Silent p.C989C 0.32 TCGA-GV-A3QF-01 12 117914394 117914394 C T KSR2 Silent p.E819E 0.25 TCGA-GV-A3QF-01 12 122818658 122818658 C T CLIP1 Splice_Site p.X876_splice 0.23 TCGA-GV-A3QF-01 12 124265822 124265822 C G DNAH10 Missense_Mutation p.Q212E 0.40 benign(0.004) TCGA-GV-A3QF-01 12 124359912 124359912 G A DNAH10 Silent p.K2573K 0.18 TCGA-GV-A3QF-01 12 132195754 132195754 C T SFSWAP 5'UTR 0.50 TCGA-GV-A3QF-01 12 27181454 27181454 A C MED21 3'UTR 0.33 TCGA-GV-A3QF-01 12 40013068 40013068 C T ABCD2 Missense_Mutation p.R117K 0.26 deleterious(0.01) probably_damaging(1) TCGA-GV-A3QF-01 12 79842725 79842726 - ACA SYT1 In_Frame_Ins p.D364_Y365insN 0.19 TCGA-GV-A3QF-01 13 111929950 111929950 A C ARHGEF7 Missense_Mutation p.Y500S 0.36 deleterious(0) possibly_damaging(0.725) TCGA-GV-A3QF-01 14 20249177 20249177 T A OR4M1 Silent p.G232G 0.25 TCGA-GV-A3QF-01 14 22690325 22690325 C T TRAV35 Missense_Mutation p.S95L 0.20 deleterious(0.02) benign(0.175) TCGA-GV-A3QF-01 14 32315779 32315779 C T NUBPL Missense_Mutation p.L266F 0.28 tolerated(0.06) possibly_damaging(0.89) TCGA-GV-A3QF-01 14 69256673 69256674 - A ZFP36L1 Frame_Shift_Ins p.Q199Pfs*3 0.35 TCGA-GV-A3QF-01 15 44055308 44055308 C - PDIA3 Frame_Shift_Del p.E170Sfs*3 0.21 TCGA-GV-A3QF-01 15 74281034 74281034 C T STOML1 Missense_Mutation p.R167H 0.55 deleterious(0) possibly_damaging(0.539) TCGA-GV-A3QF-01 16 1584327 1584327 A G TMEM204 Silent p.S17S 0.07 TCGA-GV-A3QF-01 16 21061283 21061283 C T DNAH3 Missense_Mutation p.G1432E 0.15 deleterious(0) probably_damaging(1) TCGA-GV-A3QF-01 16 46638001 46638001 G T SHCBP1 Silent p.S326S 0.21 TCGA-GV-A3QF-01 16 58620581 58620581 G A CNOT1 Nonsense_Mutation p.Q169* 0.41 TCGA-GV-A3QF-01 16 7645613 7645613 C T RBFOX1 Silent p.H197H 0.20 TCGA-GV-A3QF-01 16 78198152 78198152 C T WWOX Missense_Mutation p.A161V 0.11 tolerated(0.06) possibly_damaging(0.727) TCGA-GV-A3QF-01 17 1690224 1690224 C A SMYD4 Missense_Mutation p.K588N 0.42 tolerated(0.1) benign(0.374) TCGA-GV-A3QF-01 17 44627812 44627812 C T LRRC37A2 Missense_Mutation p.T1579I 0.20 deleterious(0) benign(0.099) TCGA-GV-A3QF-01 17 59821938 59821938 T C BRIP1 Silent p.L704L 0.39 TCGA-GV-A3QF-01 17 8638796 8638796 T C CCDC42 Missense_Mutation p.E209G 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-GV-A3QF-01 18 12794331 12794331 A T PTPN2 Silent p.I398I 0.20 TCGA-GV-A3QF-01 18 54694285 54694285 G A WDR7 Silent p.Q1440Q 0.56 TCGA-GV-A3QF-01 18 74980672 74980672 C T GALR1 Silent p.A288A 0.62 TCGA-GV-A3QF-01 19 11591557 11591557 G A ELAVL3 5'UTR 0.44 TCGA-GV-A3QF-01 19 19612809 19612809 G A GATAD2A Missense_Mutation p.R511H 0.22 tolerated(0.31) benign(0.296) TCGA-GV-A3QF-01 19 2121015 2121015 C A AP3D1 Missense_Mutation p.D443Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-GV-A3QF-01 19 30934886 30934886 C A ZNF536 Missense_Mutation p.F139L 0.28 deleterious(0) probably_damaging(0.977) TCGA-GV-A3QF-01 19 38874045 38874045 G A PSMD8 3'UTR 0.30 TCGA-GV-A3QF-01 19 40722099 40722099 C T TTC9B Missense_Mutation p.G231R 0.34 tolerated_low_confidence(0.15) possibly_damaging(0.552) TCGA-GV-A3QF-01 19 41281306 41281306 G T MIA 5'UTR 0.10 TCGA-GV-A3QF-01 19 42583136 42583136 C G ZNF574 Nonsense_Mutation p.Y126* 0.22 TCGA-GV-A3QF-01 19 45854839 45854839 C T ERCC2 3'UTR 0.42 TCGA-GV-A3QF-01 19 49248950 49248950 C A IZUMO1 Missense_Mutation p.R56M 0.27 tolerated(0.08) benign(0.158) TCGA-GV-A3QF-01 19 51171701 51171701 G A SHANK1 Silent p.S1172S 0.40 TCGA-GV-A3QF-01 19 8161817 8161817 G A FBN3 Silent p.Y1787Y 0.29 TCGA-GV-A3QF-01 1 109838858 109838858 G A MYBPHL Missense_Mutation p.R289W 0.30 deleterious(0) possibly_damaging(0.882) TCGA-GV-A3QF-01 1 114438358 114438358 T A AP4B1 Intron 0.32 TCGA-GV-A3QF-01 1 118623868 118623868 G C SPAG17 Missense_Mutation p.R689G 0.16 tolerated(0.36) benign(0.002) TCGA-GV-A3QF-01 1 1262754 1262754 G A GLTPD1 Missense_Mutation p.E86K 0.25 deleterious(0) probably_damaging(0.98) TCGA-GV-A3QF-01 1 12835183 12835183 C T PRAMEF12 Missense_Mutation p.A58V 0.18 tolerated(0.09) probably_damaging(0.971) TCGA-GV-A3QF-01 1 145563013 145563013 C T ANKRD35 Missense_Mutation p.R901C 0.20 deleterious(0) probably_damaging(0.997) TCGA-GV-A3QF-01 1 147400669 147400669 C G GPR89B Missense_Mutation p.S7C 0.30 tolerated(0.23) benign(0.004) TCGA-GV-A3QF-01 1 149858559 149858559 G T HIST2H2AC Missense_Mutation p.R12L 0.40 deleterious_low_confidence(0.02) unknown(0) TCGA-GV-A3QF-01 1 152186131 152186131 A G HRNR Silent p.H2658H 0.26 TCGA-GV-A3QF-01 1 160143967 160143967 G C ATP1A4 Missense_Mutation p.Q686H 0.21 tolerated(0.08) benign(0.001) TCGA-GV-A3QF-01 1 160143998 160143998 G C ATP1A4 Missense_Mutation p.A697P 0.18 deleterious(0) possibly_damaging(0.885) TCGA-GV-A3QF-01 1 160146388 160146388 G C ATP1A4 Missense_Mutation p.Q862H 0.25 tolerated(0.16) probably_damaging(0.999) TCGA-GV-A3QF-01 1 161495361 161495361 G C HSPA6 Missense_Mutation p.E305Q 0.49 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-GV-A3QF-01 1 173839474 173839474 T G ZBTB37 Missense_Mutation p.N37K 0.29 tolerated(0.06) benign(0.025) TCGA-GV-A3QF-01 1 185987360 185987360 G C HMCN1 Missense_Mutation p.K1782N 0.25 possibly_damaging(0.639) TCGA-GV-A3QF-01 1 19473366 19473366 G T UBR4 Missense_Mutation p.N2586K 0.14 possibly_damaging(0.626) TCGA-GV-A3QF-01 1 196967415 196967415 T A CFHR5 Missense_Mutation p.N376K 0.26 deleterious(0.02) benign(0.093) TCGA-GV-A3QF-01 1 23189721 23189721 C T EPHB2 Intron 0.07 TCGA-GV-A3QF-01 1 238048117 238048117 G T ZP4 Missense_Mutation p.Q448K 0.28 tolerated(0.19) benign(0.035) TCGA-GV-A3QF-01 1 248458286 248458286 T A OR2T12 Missense_Mutation p.I199F 0.16 deleterious(0.03) probably_damaging(0.965) TCGA-GV-A3QF-01 1 248685648 248685648 G A OR2G6 Missense_Mutation p.R234H 0.25 deleterious(0) probably_damaging(0.961) TCGA-GV-A3QF-01 1 37271789 37271789 C A GRIK3 Nonsense_Mutation p.E744* 0.38 TCGA-GV-A3QF-01 1 40704314 40704314 C A RLF Missense_Mutation p.H1314N 0.17 deleterious(0.04) probably_damaging(0.989) TCGA-GV-A3QF-01 1 48869493 48869493 G C SPATA6 Nonsense_Mutation p.S156* 0.24 TCGA-GV-A3QF-01 1 66458824 66458824 T C PDE4B Intron 0.29 TCGA-GV-A3QF-01 1 74801782 74801782 G C FPGT-TNNI3K Missense_Mutation p.G325R 0.35 deleterious(0.04) probably_damaging(1) TCGA-GV-A3QF-01 1 84944970 84944970 G T RPF1 Silent p.A2A 0.35 TCGA-GV-A3QF-01 1 93300335 93300335 G A RPL5 Splice_Site p.X64_splice 0.46 TCGA-GV-A3QF-01 20 32349815 32349815 G A ZNF341 Silent p.Q385Q 0.34 TCGA-GV-A3QF-01 20 34219095 34219095 C T CPNE1 Missense_Mutation p.V273I 0.28 tolerated(1) benign(0.001) TCGA-GV-A3QF-01 20 36611923 36611923 C T TTI1 Missense_Mutation p.G1069R 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-GV-A3QF-01 20 47739643 47739643 C - STAU1 Frame_Shift_Del p.E318Sfs*3 0.09 TCGA-GV-A3QF-01 20 60508129 60508129 G A CDH4 Missense_Mutation p.V776I 0.28 tolerated(0.05) possibly_damaging(0.884) TCGA-GV-A3QF-01 21 45542227 45542227 G A PWP2 Silent p.A602A 0.17 TCGA-GV-A3QF-01 21 46306766 46306766 C T ITGB2 Missense_Mutation p.G711D 0.12 deleterious(0) possibly_damaging(0.901) TCGA-GV-A3QF-01 22 32909631 32909631 G A SYN3 3'UTR 0.26 TCGA-GV-A3QF-01 2 101670703 101670703 G A TBC1D8 Silent p.F151F 0.37 TCGA-GV-A3QF-01 2 141812708 141812708 C A LRP1B Missense_Mutation p.G510V 0.13 probably_damaging(0.953) TCGA-GV-A3QF-01 2 160074029 160074029 G A TANC1 Missense_Mutation p.R1089K 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-GV-A3QF-01 2 1652948 1652948 C T PXDN Silent p.R868R 0.32 TCGA-GV-A3QF-01 2 166870384 166870384 C A SCN1A Missense_Mutation p.C1192F 0.41 deleterious(0.02) probably_damaging(1) TCGA-GV-A3QF-01 2 178545579 178545579 T G PDE11A Missense_Mutation p.I800L 0.16 tolerated(0.5) benign(0.004) TCGA-GV-A3QF-01 2 179575634 179575634 G T TTN Missense_Mutation p.P9397H 0.09 TCGA-GV-A3QF-01 2 179644785 179644785 A T TTN Nonsense_Mutation p.L1224* 0.36 TCGA-GV-A3QF-01 2 179644787 179644787 G T TTN Silent p.A1223A 0.35 TCGA-GV-A3QF-01 2 197889932 197889932 T A AC017035.2 3'Flank 0.36 TCGA-GV-A3QF-01 2 198265453 198265453 C T SF3B1 Missense_Mutation p.E902K 0.34 deleterious(0.01) probably_damaging(0.926) TCGA-GV-A3QF-01 2 210559447 210559447 T C MAP2 Silent p.T851T 0.16 TCGA-GV-A3QF-01 2 217300080 217300080 C T SMARCAL1 Missense_Mutation p.P502L 0.18 deleterious(0) probably_damaging(0.967) TCGA-GV-A3QF-01 2 218713307 218713307 A G TNS1 Missense_Mutation p.S520P 0.19 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QF-01 2 219924972 219924972 C T IHH Missense_Mutation p.R73H 0.36 deleterious(0) probably_damaging(0.993) TCGA-GV-A3QF-01 2 239344354 239344354 G A ASB1 Missense_Mutation p.R65H 0.21 tolerated(0.54) probably_damaging(0.986) TCGA-GV-A3QF-01 2 241715279 241715279 C T KIF1A Missense_Mutation p.R316Q 0.16 deleterious(0) probably_damaging(0.989) TCGA-GV-A3QF-01 2 3425691 3425691 C T TRAPPC12 Missense_Mutation p.R402C 0.29 deleterious(0) probably_damaging(0.974) TCGA-GV-A3QF-01 2 43452553 43452554 - C ZFP36L2 Frame_Shift_Ins p.S131Qfs*343 0.29 TCGA-GV-A3QF-01 2 63660991 63660991 A G WDPCP Missense_Mutation p.V238A 0.39 tolerated(0.3) benign(0.06) TCGA-GV-A3QF-01 2 71894600 71894600 G A DYSF Silent p.V1804V 0.32 TCGA-GV-A3QF-01 2 84777145 84777145 G C DNAH6 Missense_Mutation p.W483C 0.32 tolerated(0.16) possibly_damaging(0.593) TCGA-GV-A3QF-01 2 98986521 98986521 C T CNGA3 Missense_Mutation p.A28V 0.40 tolerated_low_confidence(0.7) benign(0.001) TCGA-GV-A3QF-01 3 107881334 107881334 C G IFT57 Missense_Mutation p.G427A 0.45 deleterious_low_confidence(0.02) benign(0.08) TCGA-GV-A3QF-01 3 127379999 127379999 G A PODXL2 Silent p.T376T 0.21 TCGA-GV-A3QF-01 3 138474750 138474750 T C PIK3CB Silent p.A81A 0.17 TCGA-GV-A3QF-01 3 151161553 151161553 G C IGSF10 Missense_Mutation p.L1728V 0.46 tolerated(0.13) benign(0.02) TCGA-GV-A3QF-01 3 154018863 154018863 T C DHX36 Missense_Mutation p.Q424R 0.41 tolerated(0.27) benign(0.104) TCGA-GV-A3QF-01 3 154027551 154027551 C T DHX36 Missense_Mutation p.G235D 0.06 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QF-01 3 171404550 171404550 G - PLD1 Frame_Shift_Del p.H598Mfs*3 0.22 TCGA-GV-A3QF-01 3 189349307 189349307 G A TP63 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.004) TCGA-GV-A3QF-01 3 193854476 193854478 TGA - HES1 In_Frame_Del p.I61del 0.31 TCGA-GV-A3QF-01 3 21465483 21465483 T G ZNF385D Missense_Mutation p.K309T 0.14 deleterious(0) probably_damaging(0.932) TCGA-GV-A3QF-01 3 3139839 3139839 T G IL5RA Missense_Mutation p.Q168P 0.19 deleterious(0) probably_damaging(0.982) TCGA-GV-A3QF-01 3 32022461 32022461 G - OSBPL10 Frame_Shift_Del p.R71Afs*39 0.40 TCGA-GV-A3QF-01 3 37100399 37100399 A C LRRFIP2 Missense_Mutation p.I584M 0.13 deleterious(0) possibly_damaging(0.781) TCGA-GV-A3QF-01 3 38050562 38050562 A T PLCD1 Missense_Mutation p.V586E 0.12 deleterious(0.04) possibly_damaging(0.457) TCGA-GV-A3QF-01 3 42244140 42244140 T C TRAK1 Missense_Mutation p.L547P 0.28 tolerated(0.06) probably_damaging(1) TCGA-GV-A3QF-01 3 49932949 49932949 G T MST1R Missense_Mutation p.L999M 0.33 tolerated(0.1) benign(0.234) TCGA-GV-A3QF-01 3 52256636 52256636 G A TLR9 Missense_Mutation p.H720Y 0.25 deleterious(0) probably_damaging(0.994) TCGA-GV-A3QF-01 3 74414794 74414794 A G CNTN3 Missense_Mutation p.Y336H 0.30 tolerated(0.54) benign(0.005) TCGA-GV-A3QF-01 3 9989043 9989043 G C PRRT3 Missense_Mutation p.S605W 0.15 deleterious(0.02) probably_damaging(1) TCGA-GV-A3QF-01 4 114170923 114170923 G A ANK2 Missense_Mutation p.G299R 0.17 probably_damaging(0.996) TCGA-GV-A3QF-01 4 155508016 155508016 C A FGA Missense_Mutation p.A189S 0.07 tolerated(0.72) possibly_damaging(0.543) TCGA-GV-A3QF-01 4 156631990 156631990 G A GUCY1A3 Missense_Mutation p.V225I 0.27 tolerated(0.61) benign(0.001) TCGA-GV-A3QF-01 4 174253977 174253977 C T HMGB2 Missense_Mutation p.E156K 0.42 tolerated(0.14) benign(0.025) TCGA-GV-A3QF-01 4 25677925 25677925 A T SLC34A2 Missense_Mutation p.T543S 0.40 tolerated(0.27) benign(0.004) TCGA-GV-A3QF-01 4 69101967 69101967 G T TMPRSS11B Missense_Mutation p.Q48K 0.14 tolerated(0.1) benign(0.019) TCGA-GV-A3QF-01 5 123983756 123983756 G C ZNF608 Missense_Mutation p.T774S 0.06 tolerated(0.35) probably_damaging(0.99) TCGA-GV-A3QF-01 5 178416401 178416401 C T GRM6 Missense_Mutation p.D340N 0.14 tolerated(0.09) probably_damaging(0.914) TCGA-GV-A3QF-01 5 178416406 178416406 C T GRM6 Missense_Mutation p.G338E 0.12 tolerated(0.33) benign(0.344) TCGA-GV-A3QF-01 5 32780872 32780872 G A NPR3 Missense_Mutation p.G414R 0.30 deleterious(0) probably_damaging(1) TCGA-GV-A3QF-01 5 70761989 70761989 A G BDP1 Silent p.P242P 0.44 TCGA-GV-A3QF-01 6 10410399 10410399 G A TFAP2A Missense_Mutation p.P72L 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-GV-A3QF-01 6 151907137 151907137 G A CCDC170 Silent p.E402E 0.22 TCGA-GV-A3QF-01 6 29012935 29012935 A G OR2W1 Silent p.Y6Y 0.34 TCGA-GV-A3QF-01 6 31110378 31110378 C T CCHCR1 Missense_Mutation p.M869I 0.29 tolerated_low_confidence(0.12) benign(0.017) TCGA-GV-A3QF-01 6 41712175 41712175 G A PGC Silent p.N96N 0.30 TCGA-GV-A3QF-01 6 42203985 42203985 C A TRERF1 Missense_Mutation p.Q1008H 0.29 tolerated(0.14) benign(0.216) TCGA-GV-A3QF-01 6 74063929 74063929 C T DPPA5 Missense_Mutation p.R7H 0.12 tolerated(0.07) benign(0.054) TCGA-GV-A3QF-01 6 83075858 83075858 G T TPBG Missense_Mutation p.D394Y 0.24 deleterious(0) probably_damaging(0.993) TCGA-GV-A3QF-01 7 100677696 100677696 C T MUC17 Missense_Mutation p.A1000V 0.15 probably_damaging(0.97) TCGA-GV-A3QF-01 7 13971355 13971355 C G ETV1 Missense_Mutation p.E192Q 0.16 tolerated(0.05) probably_damaging(0.992) TCGA-GV-A3QF-01 7 27282715 27282715 G C EVX1 Missense_Mutation p.K22N 0.36 deleterious(0) probably_damaging(0.972) TCGA-GV-A3QF-01 7 31683174 31683174 C T CCDC129 Silent p.P756P 0.23 TCGA-GV-A3QF-01 7 37904018 37904018 A G NME8 Missense_Mutation p.R175G 0.20 tolerated(0.1) benign(0.138) TCGA-GV-A3QF-01 7 44795867 44795867 A G ZMIZ2 Missense_Mutation p.M7V 0.36 deleterious_low_confidence(0.03) benign(0.021) TCGA-GV-A3QF-01 7 45726145 45726145 G A ADCY1 Splice_Site p.X776_splice 0.29 TCGA-GV-A3QF-01 7 71252674 71252674 C T CALN1 3'UTR 0.31 TCGA-GV-A3QF-01 7 88963715 88963715 T C ZNF804B Silent p.Y473Y 0.30 TCGA-GV-A3QF-01 8 110131363 110131363 C T TRHR Silent p.L292L 0.36 TCGA-GV-A3QF-01 8 110439238 110439238 C T PKHD1L1 Silent p.P951P 0.16 TCGA-GV-A3QF-01 8 120428805 120428805 C T NOV Silent p.L11L 0.29 TCGA-GV-A3QF-01 8 125072849 125072849 C G FER1L6 Missense_Mutation p.Q1016E 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3QF-01 8 133854841 133854842 - A PHF20L1 Frame_Shift_Ins p.I826Nfs*7 0.31 TCGA-GV-A3QF-01 8 25718601 25718601 C - EBF2 Frame_Shift_Del p.V436Sfs*44 0.33 TCGA-GV-A3QF-01 8 2824091 2824091 C G CSMD1 Splice_Site p.X3034_splice 0.28 TCGA-GV-A3QF-01 8 77767234 77767234 C T ZFHX4 Missense_Mutation p.H2693Y 0.16 probably_damaging(0.946) TCGA-GV-A3QF-01 8 87588277 87588277 C G CNGB3 Missense_Mutation p.E729Q 0.05 tolerated(0.38) benign(0.002) TCGA-GV-A3QF-01 9 112151578 112151590 GCCAAAACTGTGC - PTPN3 Frame_Shift_Del p.A726Rfs*14 0.56 TCGA-GV-A3QF-01 9 117186682 117186682 G C DFNB31 Missense_Mutation p.R450G 0.15 tolerated(0.06) possibly_damaging(0.497) TCGA-GV-A3QF-01 9 13205963 13205963 C A MPDZ Missense_Mutation p.V476F 0.09 tolerated(0.19) possibly_damaging(0.485) TCGA-GV-A3QF-01 9 135777087 135777087 C A TSC1 Splice_Site p.X798_splice 0.61 TCGA-GV-A3QF-01 9 136337021 136337021 C T SLC2A6 3'UTR 0.60 TCGA-GV-A3QF-01 9 139276292 139276292 G A SNAPC4 Silent p.A767A 0.18 TCGA-GV-A3QF-01 9 139310879 139310879 G A PMPCA Intron 0.64 TCGA-GV-A3QF-01 9 34622477 34622477 T C ARID3C Silent p.A305A 0.56 TCGA-GV-A3QF-01 9 429743 429743 C T DOCK8 Silent p.F1505F 0.77 TCGA-GV-A3QF-01 9 5339616 5339616 A T RLN1 Missense_Mutation p.I44N 0.06 deleterious(0) probably_damaging(0.966) TCGA-GV-A3QF-01 X 102318207 102318207 C T BEX1 Intron 0.69 TCGA-GV-A3QF-01 X 151303231 151303231 C T MAGEA10 Missense_Mutation p.G288S 0.64 tolerated(0.05) benign(0.113) TCGA-GV-A3QF-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.68 TCGA-GV-A3QF-01 X 53106253 53106253 G A GPR173 Silent p.L150L 0.39 TCGA-GV-A3QG-01 10 106918731 106918731 C A SORCS3 Missense_Mutation p.P571T 0.11 deleterious(0) probably_damaging(1) TCGA-GV-A3QG-01 10 106937850 106937850 G T SORCS3 Missense_Mutation p.W643L 0.16 deleterious(0) probably_damaging(1) TCGA-GV-A3QG-01 10 28908493 28908493 G A WAC Silent p.K634K 0.29 TCGA-GV-A3QG-01 10 30915167 30915167 G A LYZL2 Silent p.S101S 0.25 TCGA-GV-A3QG-01 10 70446227 70446228 - A TET1 Frame_Shift_Ins p.G1724Rfs*46 0.19 TCGA-GV-A3QG-01 10 76349059 76349059 G C ADK Missense_Mutation p.R249T 0.15 tolerated(0.13) benign(0.013) TCGA-GV-A3QG-01 10 87487630 87487630 G T GRID1 Silent p.I505I 0.20 TCGA-GV-A3QG-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.33 TCGA-GV-A3QG-01 11 108188181 108188181 G A ATM Missense_Mutation p.E2094K 0.21 deleterious(0) benign(0.206) TCGA-GV-A3QG-01 11 128839161 128839161 C G ARHGAP32 Missense_Mutation p.E1969Q 0.17 tolerated_low_confidence(0.08) probably_damaging(0.993) TCGA-GV-A3QG-01 11 17537792 17537792 C T USH1C Missense_Mutation p.R419Q 0.16 deleterious_low_confidence(0.02) benign(0.232) TCGA-GV-A3QG-01 11 55703362 55703362 T A OR5I1 Missense_Mutation p.D172V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-GV-A3QG-01 11 65650570 65650570 C T CTSW Missense_Mutation p.P259L 0.24 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QG-01 11 66297375 66297375 G A BBS1 Silent p.L475L 0.21 TCGA-GV-A3QG-01 11 87847081 87847081 C A RAB38 3'UTR 0.26 TCGA-GV-A3QG-01 11 92085844 92085844 C G FAT3 Missense_Mutation p.S189C 0.19 probably_damaging(1) TCGA-GV-A3QG-01 11 93844208 93844208 C T HEPHL1 Missense_Mutation p.T1062I 0.19 tolerated(0.28) probably_damaging(0.94) TCGA-GV-A3QG-01 12 101679598 101679598 G T UTP20 Missense_Mutation p.V89F 0.25 deleterious(0) possibly_damaging(0.864) TCGA-GV-A3QG-01 12 119909888 119909888 A G CCDC60 Missense_Mutation p.Q87R 0.23 deleterious(0.04) benign(0.023) TCGA-GV-A3QG-01 12 124846735 124846735 G A NCOR2 Nonsense_Mutation p.Q1013* 0.23 TCGA-GV-A3QG-01 12 69121136 69121136 A C NUP107 Missense_Mutation p.E567D 0.17 tolerated(0.25) benign(0.015) TCGA-GV-A3QG-01 13 101944345 101944345 G C NALCN Missense_Mutation p.T348S 0.11 tolerated(0.87) benign(0.023) TCGA-GV-A3QG-01 13 33315272 33315272 G C PDS5B Missense_Mutation p.E821Q 0.19 deleterious(0) probably_damaging(0.976) TCGA-GV-A3QG-01 13 53261990 53261990 T C SUGT1 3'UTR 0.35 TCGA-GV-A3QG-01 14 51206189 51206189 A G NIN Missense_Mutation p.I1822T 0.23 tolerated(0.8) benign(0.005) TCGA-GV-A3QG-01 14 61186531 61186531 C T SIX4 Missense_Mutation p.S499N 0.20 tolerated(0.35) benign(0.002) TCGA-GV-A3QG-01 14 71568799 71568800 - T PCNX Frame_Shift_Ins p.G1895Wfs*25 0.10 TCGA-GV-A3QG-01 14 93299497 93299497 C A GOLGA5 Missense_Mutation p.Q584K 0.25 deleterious(0.01) possibly_damaging(0.783) TCGA-GV-A3QG-01 14 95560364 95560364 T C DICER1 Missense_Mutation p.N1742S 0.34 deleterious(0.02) benign(0.016) TCGA-GV-A3QG-01 15 62939540 62939540 C T TLN2 Missense_Mutation p.R11C 0.23 tolerated(0.05) possibly_damaging(0.608) TCGA-GV-A3QG-01 15 78780657 78780657 G A IREB2 Missense_Mutation p.D644N 0.20 tolerated(0.08) benign(0.021) TCGA-GV-A3QG-01 15 79750503 79750503 G A KIAA1024 Missense_Mutation p.G672R 0.29 tolerated(0.2) possibly_damaging(0.696) TCGA-GV-A3QG-01 15 83876119 83876119 G A HDGFRP3 Silent p.F16F 0.13 TCGA-GV-A3QG-01 16 20432694 20432694 C A ACSM5 Missense_Mutation p.S246R 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-GV-A3QG-01 16 3807992 3807992 C G CREBBP Missense_Mutation p.D1143H 0.22 unknown(0) TCGA-GV-A3QG-01 16 56920342 56920342 C G SLC12A3 Silent p.T664T 0.10 TCGA-GV-A3QG-01 16 68349908 68349908 A G PRMT7 Missense_Mutation p.N9S 0.22 deleterious(0.04) probably_damaging(0.992) TCGA-GV-A3QG-01 16 89916779 89916779 G A SPIRE2 Missense_Mutation p.R119H 0.33 deleterious(0) probably_damaging(1) TCGA-GV-A3QG-01 16 90127012 90127012 C A PRDM7 Missense_Mutation p.D324Y 0.07 deleterious(0.03) possibly_damaging(0.768) TCGA-GV-A3QG-01 17 1939321 1939321 G T DPH1 Silent p.V117V 0.14 TCGA-GV-A3QG-01 17 67029998 67029998 T C ABCA9 Missense_Mutation p.Y382C 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-GV-A3QG-01 17 67079441 67079441 C G ABCA6 Missense_Mutation p.E1463Q 0.34 deleterious(0.02) possibly_damaging(0.641) TCGA-GV-A3QG-01 18 29126318 29126318 G C DSG2 Missense_Mutation p.R990T 0.24 deleterious(0.03) benign(0.091) TCGA-GV-A3QG-01 18 39607448 39607448 G A PIK3C3 Missense_Mutation p.R509K 0.07 tolerated(0.9) benign(0.002) TCGA-GV-A3QG-01 18 56414989 56414989 A G MALT1 Missense_Mutation p.H797R 0.22 tolerated_low_confidence(0.45) benign(0.001) TCGA-GV-A3QG-01 19 46180989 46180989 C G GIPR Silent p.V292V 0.19 TCGA-GV-A3QG-01 19 49316806 49316806 G A HSD17B14 Silent p.I182I 0.16 TCGA-GV-A3QG-01 19 54692102 54692102 C A MBOAT7 Missense_Mutation p.G59W 0.21 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QG-01 19 5727329 5727329 C A CATSPERD Nonsense_Mutation p.C59* 0.22 TCGA-GV-A3QG-01 1 120927082 120927082 G A FCGR1B 3'UTR 0.40 TCGA-GV-A3QG-01 1 157667761 157667761 C A FCRL3 Intron 0.25 TCGA-GV-A3QG-01 1 159832381 159832381 G T VSIG8 5'UTR 0.22 TCGA-GV-A3QG-01 1 171510162 171510162 G T PRRC2C Missense_Mutation p.G1184V 0.16 unknown(0) TCGA-GV-A3QG-01 1 185972852 185972852 C G HMCN1 Missense_Mutation p.P1451A 0.05 probably_damaging(0.991) TCGA-GV-A3QG-01 1 214814730 214814730 C T CENPF Nonsense_Mutation p.Q1017* 0.16 TCGA-GV-A3QG-01 1 247614709 247614709 C T OR2B11 Silent p.S192S 0.17 TCGA-GV-A3QG-01 1 248005058 248005058 G A OR11L1 Silent p.T47T 0.26 TCGA-GV-A3QG-01 1 8934961 8934961 T C ENO1 Missense_Mutation p.I3V 0.47 tolerated_low_confidence(0.16) benign(0.056) TCGA-GV-A3QG-01 20 1460373 1460373 C T SIRPB2 Silent p.S141S 0.28 TCGA-GV-A3QG-01 20 33028050 33028050 C A ITCH Missense_Mutation p.S298Y 0.21 deleterious(0.03) benign(0.372) TCGA-GV-A3QG-01 20 34542238 34542238 G A SCAND1 5'UTR 0.35 TCGA-GV-A3QG-01 20 35743603 35743603 C T MROH8 Missense_Mutation p.M863I 0.10 tolerated(0.18) benign(0.042) TCGA-GV-A3QG-01 22 31486843 31486843 C T SMTN Silent p.P305P 0.29 TCGA-GV-A3QG-01 22 32239701 32239701 G A DEPDC5 Missense_Mutation p.V893I 0.31 tolerated(0.1) benign(0.043) TCGA-GV-A3QG-01 22 32614491 32614491 C T SLC5A4 3'UTR 0.21 TCGA-GV-A3QG-01 22 40161511 40161511 G A ENTHD1 Silent p.L312L 0.25 TCGA-GV-A3QG-01 2 100209852 100209852 T C AFF3 Silent p.L782L 0.22 TCGA-GV-A3QG-01 2 107040980 107040980 G T RGPD3 Missense_Mutation p.A1148E 0.14 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QG-01 2 109379691 109379691 A G RANBP2 Splice_Site p.X900_splice 0.28 TCGA-GV-A3QG-01 2 139429145 139429145 C A NXPH2 Missense_Mutation p.V48L 0.19 tolerated_low_confidence(0.42) benign(0.035) TCGA-GV-A3QG-01 2 168114455 168114455 G A XIRP2 3'UTR 0.20 TCGA-GV-A3QG-01 2 170097513 170097513 C G LRP2 Missense_Mutation p.E1344Q 0.27 probably_damaging(0.999) TCGA-GV-A3QG-01 2 172928446 172928446 A G METAP1D Missense_Mutation p.K69R 0.19 tolerated(0.42) benign(0.115) TCGA-GV-A3QG-01 2 179629296 179629296 C T TTN Missense_Mutation p.D3316N 0.08 TCGA-GV-A3QG-01 2 17998336 17998336 G A MSGN1 Missense_Mutation p.R184H 0.21 tolerated(0.15) benign(0.191) TCGA-GV-A3QG-01 2 216279518 216279518 T A FN1 Intron 0.14 TCGA-GV-A3QG-01 2 216992289 216992289 A G XRCC5 Missense_Mutation p.T277A 0.20 tolerated(0.53) benign(0.001) TCGA-GV-A3QG-01 2 233632894 233632894 A G KCNJ13 3'UTR 0.21 TCGA-GV-A3QG-01 2 37458816 37458816 C T CEBPZ 5'UTR 0.42 TCGA-GV-A3QG-01 2 43939394 43939394 A T PLEKHH2 Missense_Mutation p.T778S 0.17 tolerated(0.06) benign(0.021) TCGA-GV-A3QG-01 2 61566811 61566811 C T USP34 Missense_Mutation p.V836I 0.23 tolerated(0.11) benign(0.013) TCGA-GV-A3QG-01 2 71892312 71892312 G A DYSF Missense_Mutation p.R1732Q 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-GV-A3QG-01 3 108812380 108812380 G T MORC1 Missense_Mutation p.L198M 0.30 deleterious(0) probably_damaging(0.974) TCGA-GV-A3QG-01 3 155206449 155206449 C A PLCH1 Missense_Mutation p.G835C 0.30 deleterious(0) probably_damaging(1) TCGA-GV-A3QG-01 3 18427954 18427954 C T SATB1 Silent p.L452L 0.05 TCGA-GV-A3QG-01 3 19947209 19947209 T C EFHB Missense_Mutation p.S441G 0.38 tolerated(0.13) benign(0.027) TCGA-GV-A3QG-01 3 9547837 9547837 C T LHFPL4 Missense_Mutation p.E153K 0.41 tolerated(0.43) benign(0.005) TCGA-GV-A3QG-01 4 114286340 114286340 T G ANK2 Splice_Site p.X3678_splice 0.10 TCGA-GV-A3QG-01 4 155191121 155191121 G A DCHS2 Nonsense_Mutation p.Q1715* 0.24 TCGA-GV-A3QG-01 4 42403526 42403526 C T SHISA3 3'UTR 0.15 TCGA-GV-A3QG-01 4 5016903 5016903 G A CYTL1 Missense_Mutation p.T129M 0.28 deleterious_low_confidence(0.05) benign(0.218) TCGA-GV-A3QG-01 4 52862091 52862091 C T LRRC66 Missense_Mutation p.G366D 0.15 tolerated(0.55) benign(0.01) TCGA-GV-A3QG-01 4 77700119 77700119 T C SHROOM3 Missense_Mutation p.M1927T 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-GV-A3QG-01 5 115323525 115323525 C T AQPEP Missense_Mutation p.R332W 0.13 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QG-01 5 140718896 140718896 G C PCDHGA2 Missense_Mutation p.E120Q 0.09 deleterious_low_confidence(0.02) benign(0.103) TCGA-GV-A3QG-01 5 140740084 140740084 G A PCDHGB2 Missense_Mutation p.D128N 0.33 deleterious(0.01) probably_damaging(1) TCGA-GV-A3QG-01 6 109484117 109484117 C T CEP57L1 Nonsense_Mutation p.R443* 0.15 TCGA-GV-A3QG-01 6 169632172 169632172 G A THBS2 Missense_Mutation p.A685V 0.24 deleterious(0.03) probably_damaging(1) TCGA-GV-A3QG-01 6 17601039 17601039 C T FAM8A1 Silent p.S133S 0.18 TCGA-GV-A3QG-01 6 26124513 26124513 G C HIST1H2AC Missense_Mutation p.R18P 0.26 deleterious_low_confidence(0) unknown(0) TCGA-GV-A3QG-01 6 53989534 53989534 C A MLIP Silent p.P161P 0.25 TCGA-GV-A3QG-01 7 12680101 12680101 C G SCIN Missense_Mutation p.Q514E 0.11 deleterious(0) probably_damaging(0.995) TCGA-GV-A3QG-01 7 146829367 146829367 T A CNTNAP2 Missense_Mutation p.Y372N 0.28 tolerated(0.13) benign(0) TCGA-GV-A3QG-01 7 149522398 149522398 C T SSPO RNA 0.33 TCGA-GV-A3QG-01 7 17890486 17890488 TTC - SNX13 In_Frame_Del p.E313del 0.10 TCGA-GV-A3QG-01 7 26224583 26224584 - T NFE2L3 Frame_Shift_Ins p.L423Ffs*7 0.28 TCGA-GV-A3QG-01 7 42116455 42116456 - T GLI3 Frame_Shift_Ins p.H123Qfs*16 0.16 TCGA-GV-A3QG-01 8 42045071 42045071 G A PLAT Silent p.Y128Y 0.23 TCGA-GV-A3QG-01 8 6914048 6914048 C A DEFA5 Missense_Mutation p.G58C 0.10 deleterious(0) probably_damaging(0.978) TCGA-GV-A3QG-01 9 127999293 127999293 C G HSPA5 Missense_Mutation p.D515H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-GV-A3QG-01 9 139656658 139656658 C T LCN15 Missense_Mutation p.V168I 0.38 tolerated(0.09) benign(0.015) TCGA-GV-A3QG-01 9 2718571 2718571 G A KCNV2 Missense_Mutation p.A278T 0.15 tolerated(1) benign(0.002) TCGA-GV-A3QG-01 9 34976146 34976146 C A KIAA1045 Intron 0.18 TCGA-GV-A3QG-01 X 12736410 12736410 C T FRMPD4 Silent p.T1155T 0.53 TCGA-GV-A3QG-01 X 22291514 22291514 C T ZNF645 Missense_Mutation p.R136C 0.31 deleterious(0) benign(0.129) TCGA-GV-A3QH-01 10 115401142 115401142 A G NRAP Silent p.V435V 0.66 TCGA-GV-A3QH-01 10 121652431 121652431 C G SEC23IP Missense_Mutation p.S46C 0.83 deleterious(0.01) benign(0.155) TCGA-GV-A3QH-01 10 123845062 123845062 G C TACC2 Missense_Mutation p.G1016A 0.62 probably_damaging(0.976) TCGA-GV-A3QH-01 10 15760899 15760899 C G ITGA8 Splice_Site p.X70_splice 0.40 TCGA-GV-A3QH-01 10 43015885 43015885 T C ZNF37BP RNA 0.20 TCGA-GV-A3QH-01 10 61012730 61012730 C T FAM13C Missense_Mutation p.R454H 0.35 tolerated(0.13) benign(0.001) TCGA-GV-A3QH-01 10 95396758 95396758 C G PDE6C Missense_Mutation p.Q474E 0.59 tolerated(0.07) benign(0.007) TCGA-GV-A3QH-01 11 118889387 118889387 G C TRAPPC4 5'UTR 0.67 TCGA-GV-A3QH-01 11 118919580 118919580 C T HYOU1 Missense_Mutation p.E671K 0.53 tolerated(0.2) benign(0.013) TCGA-GV-A3QH-01 11 119061144 119061144 G C CCDC153 Silent p.L166L 0.58 TCGA-GV-A3QH-01 11 120989224 120989224 G C TECTA Missense_Mutation p.D334H 0.12 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 11 1213130 1213130 C G MUC5AC RNA 0.15 TCGA-GV-A3QH-01 11 133789947 133789947 G A IGSF9B Missense_Mutation p.R1225C 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GV-A3QH-01 11 18322409 18322409 C T HPS5 Silent p.Q317Q 0.50 TCGA-GV-A3QH-01 11 2443523 2443523 G A TRPM5 Missense_Mutation p.P49L 0.34 deleterious(0) possibly_damaging(0.465) TCGA-GV-A3QH-01 11 2975840 2975840 C A NAP1L4 Nonsense_Mutation p.E318* 0.42 TCGA-GV-A3QH-01 11 48267009 48267009 C T OR4X2 Silent p.I118I 0.44 TCGA-GV-A3QH-01 11 61039180 61039180 C T VWCE Silent p.S584S 0.12 TCGA-GV-A3QH-01 11 62397103 62397103 G C GANAB Silent p.P619P 0.29 TCGA-GV-A3QH-01 11 65547046 65547046 T C AP5B1 Silent p.A306A 0.42 TCGA-GV-A3QH-01 11 66360121 66360121 C T CCDC87 Silent p.L122L 0.46 TCGA-GV-A3QH-01 11 68171050 68171050 G C LRP5 Missense_Mutation p.D562H 0.35 deleterious(0) probably_damaging(0.986) TCGA-GV-A3QH-01 11 76873903 76873903 C G MYO7A Missense_Mutation p.T520R 0.49 deleterious(0.01) probably_damaging(0.951) TCGA-GV-A3QH-01 11 92616246 92616246 G A FAT3 Silent p.P4208P 0.12 TCGA-GV-A3QH-01 12 10560257 10560257 G C KLRC4 Missense_Mutation p.L158V 0.24 deleterious(0.04) benign(0.008) TCGA-GV-A3QH-01 12 113440781 113440781 C A OAS2 Missense_Mutation p.F351L 0.48 deleterious(0) possibly_damaging(0.724) TCGA-GV-A3QH-01 12 118480669 118480669 C T WSB2 Missense_Mutation p.R179H 0.20 deleterious(0.04) probably_damaging(0.966) TCGA-GV-A3QH-01 12 132685671 132685671 C G GALNT9 Missense_Mutation p.E101Q 0.23 tolerated(0.18) probably_damaging(0.999) TCGA-GV-A3QH-01 12 45823019 45823019 G C ANO6 Missense_Mutation p.M907I 0.28 deleterious(0.05) benign(0.001) TCGA-GV-A3QH-01 12 46757539 46757540 - A SLC38A2 Frame_Shift_Ins p.A342Cfs*14 0.38 TCGA-GV-A3QH-01 12 56641847 56641847 G C ANKRD52 Missense_Mutation p.I646M 0.38 deleterious(0.01) possibly_damaging(0.529) TCGA-GV-A3QH-01 12 65110565 65110565 G A GNS Missense_Mutation p.R539C 0.23 tolerated_low_confidence(0.18) benign(0.183) TCGA-GV-A3QH-01 12 6707456 6707456 C T CHD4 Missense_Mutation p.E540K 0.53 deleterious(0.04) possibly_damaging(0.874) TCGA-GV-A3QH-01 12 83081401 83081401 C T TMTC2 Silent p.L12L 0.28 TCGA-GV-A3QH-01 13 32821530 32821530 C T FRY Missense_Mutation p.P2300L 0.43 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 13 39262725 39262725 T A FREM2 Missense_Mutation p.V415E 0.24 deleterious(0.02) possibly_damaging(0.614) TCGA-GV-A3QH-01 14 20482654 20482654 G T OR4K14 Missense_Mutation p.S233R 0.30 deleterious(0.04) benign(0.319) TCGA-GV-A3QH-01 14 23596404 23596404 C T SLC7A8 Silent p.A530A 0.24 TCGA-GV-A3QH-01 14 38724762 38724762 C T CLEC14A Missense_Mutation p.G156S 0.46 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 14 59820639 59820639 G C DAAM1 Missense_Mutation p.K781N 0.17 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QH-01 14 68120200 68120200 C T VTI1B Missense_Mutation p.E186K 0.19 deleterious(0.03) benign(0.297) TCGA-GV-A3QH-01 14 72196849 72196849 G A SIPA1L1 Silent p.S1585S 0.06 TCGA-GV-A3QH-01 14 93670128 93670128 C G C14orf142 Splice_Site p.X70_splice 0.47 TCGA-GV-A3QH-01 14 93714878 93714878 G C BTBD7 Missense_Mutation p.Q689E 0.48 deleterious(0) possibly_damaging(0.743) TCGA-GV-A3QH-01 14 95562743 95562743 G C DICER1 Missense_Mutation p.S1505C 0.30 deleterious(0) probably_damaging(0.941) TCGA-GV-A3QH-01 15 101887981 101887981 C T PCSK6 Intron 0.31 TCGA-GV-A3QH-01 15 42512293 42512293 C T TMEM87A Missense_Mutation p.E482K 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-GV-A3QH-01 15 66015201 66015201 G A DENND4A Nonsense_Mutation p.Q525* 0.17 TCGA-GV-A3QH-01 15 69677202 69677202 C T PAQR5 Silent p.A122A 0.45 TCGA-GV-A3QH-01 15 72039168 72039176 CTGAACCAG - THSD4 Splice_Site p.X679_splice 0.23 TCGA-GV-A3QH-01 15 83698894 83698894 C T BTBD1 Missense_Mutation p.R350Q 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-GV-A3QH-01 15 83735836 83735836 G A BTBD1 Missense_Mutation p.A23V 0.44 tolerated(0.2) unknown(0) TCGA-GV-A3QH-01 16 135661 135661 G A MPG Missense_Mutation p.R261Q 0.36 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 16 14021928 14021928 G A ERCC4 Missense_Mutation p.E210K 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-GV-A3QH-01 16 14354763 14354764 - A MKL2 Intron 0.17 TCGA-GV-A3QH-01 16 29996729 29996729 G A TAOK2 Missense_Mutation p.E540K 0.40 deleterious(0.01) benign(0.192) TCGA-GV-A3QH-01 16 30097483 30097483 G A TBX6 3'UTR 0.06 TCGA-GV-A3QH-01 16 31927296 31927296 T C ZNF267 Missense_Mutation p.Y576H 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-GV-A3QH-01 16 3639978 3639978 C A SLX4 Missense_Mutation p.A1221S 0.26 tolerated(0.71) benign(0.055) TCGA-GV-A3QH-01 16 46771856 46771856 C T MYLK3 Silent p.E256E 0.21 TCGA-GV-A3QH-01 16 46772020 46772020 C T MYLK3 Missense_Mutation p.E202K 0.30 tolerated(0.1) benign(0.035) TCGA-GV-A3QH-01 16 46773969 46773969 C T MYLK3 Missense_Mutation p.E190K 0.10 deleterious(0.04) possibly_damaging(0.521) TCGA-GV-A3QH-01 16 46773981 46773981 C T MYLK3 Missense_Mutation p.E186K 0.10 tolerated(1) benign(0.001) TCGA-GV-A3QH-01 16 64981662 64981662 A C CDH11 Nonsense_Mutation p.Y745* 0.21 TCGA-GV-A3QH-01 16 89735693 89735693 G C SPATA33 Splice_Site p.X70_splice 0.18 TCGA-GV-A3QH-01 17 29645248 29645248 T G EVI2A 3'UTR 0.17 TCGA-GV-A3QH-01 17 30323833 30323833 C G SUZ12 Missense_Mutation p.S604C 0.55 deleterious(0) possibly_damaging(0.86) TCGA-GV-A3QH-01 17 34077315 34077315 C T GAS2L2 Silent p.E136E 0.09 TCGA-GV-A3QH-01 17 34079717 34079717 G T GAS2L2 Missense_Mutation p.D51E 0.40 deleterious(0.03) possibly_damaging(0.851) TCGA-GV-A3QH-01 17 35615271 35615271 T G ACACA Silent p.R509R 0.17 TCGA-GV-A3QH-01 17 40817733 40817733 G A TUBG2 Missense_Mutation p.R244H 0.32 deleterious(0) probably_damaging(0.961) TCGA-GV-A3QH-01 17 59152341 59152341 C T BCAS3 Missense_Mutation p.S712F 0.37 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 17 61949870 61949870 G A CSH2 Intron 0.23 TCGA-GV-A3QH-01 17 61949890 61949890 T G CSH2 Intron 0.13 TCGA-GV-A3QH-01 17 61972750 61972750 A C CSH1 Intron 0.11 TCGA-GV-A3QH-01 17 66899519 66899519 G A ABCA8 Silent p.L800L 0.35 TCGA-GV-A3QH-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.77 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 17 8379127 8379127 C G MYH10 Missense_Mutation p.E2007Q 0.70 benign(0.007) TCGA-GV-A3QH-01 18 30804901 30804901 C G CCDC178 Splice_Site p.X553_splice 0.21 TCGA-GV-A3QH-01 18 56816747 56816747 C T SEC11C Silent p.L30L 0.50 TCGA-GV-A3QH-01 18 60241918 60241918 C T ZCCHC2 Silent p.I868I 0.22 TCGA-GV-A3QH-01 18 61058250 61058250 C G VPS4B Missense_Mutation p.L431F 0.38 deleterious(0.03) benign(0.251) TCGA-GV-A3QH-01 18 8718431 8718431 G C SOGA2 5'UTR 0.46 TCGA-GV-A3QH-01 19 11031771 11031771 C G CARM1 Missense_Mutation p.S528C 0.20 tolerated_low_confidence(0.06) benign(0.293) TCGA-GV-A3QH-01 19 1231042 1231042 C A C19orf26 Silent p.S404S 0.17 TCGA-GV-A3QH-01 19 12800930 12800931 - GAA FBXW9 Intron 0.21 TCGA-GV-A3QH-01 19 12864153 12864153 G C BEST2 Missense_Mutation p.V78L 0.13 tolerated(0.54) benign(0.101) TCGA-GV-A3QH-01 19 22271633 22271633 C G ZNF257 Missense_Mutation p.Q361E 0.27 tolerated(0.5) benign(0) TCGA-GV-A3QH-01 19 38655151 38655151 C G SIPA1L3 Missense_Mutation p.S1271R 0.34 deleterious(0) probably_damaging(0.969) TCGA-GV-A3QH-01 19 41782119 41782119 C T HNRNPUL1 Silent p.L234L 0.42 TCGA-GV-A3QH-01 19 53116283 53116283 G C ZNF83 Missense_Mutation p.S512C 0.39 deleterious(0) benign(0.436) TCGA-GV-A3QH-01 19 57133450 57133450 C G ZNF71 Silent p.T265T 0.16 TCGA-GV-A3QH-01 19 9076312 9076312 T C MUC16 Missense_Mutation p.T3712A 0.21 unknown(0) TCGA-GV-A3QH-01 1 100706396 100706396 C A DBT Missense_Mutation p.L32F 0.46 tolerated_low_confidence(0.18) benign(0.01) TCGA-GV-A3QH-01 1 116941293 116941293 G A ATP1A1 Silent p.L725L 0.16 TCGA-GV-A3QH-01 1 150484939 150484939 C T ECM1 Missense_Mutation p.R426W 0.17 deleterious(0.02) benign(0.139) TCGA-GV-A3QH-01 1 152325463 152325463 C T FLG2 Missense_Mutation p.G1600D 0.52 possibly_damaging(0.819) TCGA-GV-A3QH-01 1 16464437 16464437 T C EPHA2 Missense_Mutation p.Y408C 0.57 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QH-01 1 169510442 169510442 G C F5 Missense_Mutation p.P1296A 0.46 deleterious_low_confidence(0.02) benign(0.033) TCGA-GV-A3QH-01 1 17939589 17939589 G A ARHGEF10L Missense_Mutation p.A216T 0.19 tolerated(0.29) benign(0.021) TCGA-GV-A3QH-01 1 21186926 21186926 C G EIF4G3 Missense_Mutation p.E1016Q 0.48 tolerated(0.08) probably_damaging(0.999) TCGA-GV-A3QH-01 1 237944916 237944916 A T RYR2 Missense_Mutation p.M3978L 0.36 probably_damaging(0.983) TCGA-GV-A3QH-01 1 32222088 32222088 G A BAI2 Missense_Mutation p.A117V 0.17 tolerated_low_confidence(0.45) benign(0.014) TCGA-GV-A3QH-01 1 47279201 47279201 C G CYP4B1 Missense_Mutation p.F181L 0.17 deleterious(0.04) benign(0.384) TCGA-GV-A3QH-01 1 60538336 60538336 C T C1orf87 5'UTR 0.47 TCGA-GV-A3QH-01 1 75862289 75862289 G A SLC44A5 Missense_Mutation p.P11S 0.56 tolerated(0.25) benign(0.001) TCGA-GV-A3QH-01 1 94697113 94697113 G C ARHGAP29 Missense_Mutation p.Q19E 0.12 deleterious(0.02) probably_damaging(0.977) TCGA-GV-A3QH-01 20 20506951 20506951 G C RALGAPA2 Missense_Mutation p.S1213C 0.24 deleterious(0.04) possibly_damaging(0.848) TCGA-GV-A3QH-01 20 25656896 25656896 G C ZNF337 Nonsense_Mutation p.S343* 0.38 TCGA-GV-A3QH-01 20 33364214 33364214 C T NCOA6 Nonsense_Mutation p.W91* 0.37 TCGA-GV-A3QH-01 20 34526618 34526618 G T PHF20 Splice_Site p.X767_splice 0.37 TCGA-GV-A3QH-01 20 34526935 34526935 G A PHF20 Missense_Mutation p.E873K 0.38 tolerated(0.08) probably_damaging(0.953) TCGA-GV-A3QH-01 20 865961 865961 C G ANGPT4 Missense_Mutation p.E199Q 0.32 deleterious(0.02) possibly_damaging(0.685) TCGA-GV-A3QH-01 21 45479022 45479022 C T TRAPPC10 Silent p.F239F 0.31 TCGA-GV-A3QH-01 21 47768968 47768968 G C PCNT Missense_Mutation p.E359Q 0.27 benign(0.091) TCGA-GV-A3QH-01 22 17976513 17976513 G C CECR2 Silent p.L59L 0.17 TCGA-GV-A3QH-01 22 32439225 32439225 G A SLC5A1 5'UTR 0.73 TCGA-GV-A3QH-01 22 38119384 38119384 A C TRIOBP Missense_Mutation p.E274A 0.20 tolerated_low_confidence(0.26) benign(0.003) TCGA-GV-A3QH-01 22 42999052 42999052 C G POLDIP3 Missense_Mutation p.Q58H 0.32 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QH-01 22 44532339 44532339 G A PARVB Splice_Site p.X245_splice 0.25 TCGA-GV-A3QH-01 22 50686355 50686355 G A HDAC10 Missense_Mutation p.A434V 0.34 tolerated(0.17) benign(0.034) TCGA-GV-A3QH-01 2 128389955 128389955 G A MYO7B Missense_Mutation p.R1769H 0.26 tolerated(0.19) probably_damaging(1) TCGA-GV-A3QH-01 2 149226442 149226442 G C MBD5 Missense_Mutation p.M310I 0.23 deleterious(0.02) benign(0.043) TCGA-GV-A3QH-01 2 179411950 179411950 G A TTN Silent p.H31434H 0.03 TCGA-GV-A3QH-01 2 179556797 179556797 C G TTN Missense_Mutation p.E10570Q 0.24 TCGA-GV-A3QH-01 2 179582433 179582433 G A TTN Nonsense_Mutation p.Q8390* 0.44 TCGA-GV-A3QH-01 2 179590304 179590304 G T TTN Missense_Mutation p.S6876Y 0.45 TCGA-GV-A3QH-01 2 17961316 17961316 G C GEN1 Missense_Mutation p.E446Q 0.89 tolerated(0.95) benign(0.024) TCGA-GV-A3QH-01 2 20508104 20508104 C G PUM2 Missense_Mutation p.G254R 0.83 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-GV-A3QH-01 2 225378258 225378258 A G CUL3 Missense_Mutation p.S213P 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-GV-A3QH-01 2 230678946 230678946 T G TRIP12 Intron 0.27 TCGA-GV-A3QH-01 2 231281027 231281027 G A SP100 Missense_Mutation p.G6S 0.21 tolerated_low_confidence(1) benign(0.003) TCGA-GV-A3QH-01 2 242433449 242433449 G A FARP2 Missense_Mutation p.S1025N 0.30 deleterious(0) benign(0.395) TCGA-GV-A3QH-01 2 61706062 61706062 C G XPO1 Missense_Mutation p.E1037Q 0.52 deleterious(0.03) benign(0.274) TCGA-GV-A3QH-01 2 70903919 70903919 C T ADD2 Intron 0.84 TCGA-GV-A3QH-01 2 88125241 88125241 C T RGPD2 Missense_Mutation p.R3H 0.23 deleterious(0) probably_damaging(0.928) TCGA-GV-A3QH-01 2 96859074 96859074 C G STARD7 Missense_Mutation p.R189T 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-GV-A3QH-01 3 119134219 119134219 C G ARHGAP31 Missense_Mutation p.S1148C 0.36 deleterious(0) possibly_damaging(0.838) TCGA-GV-A3QH-01 3 130449257 130449257 G C PIK3R4 Missense_Mutation p.L494V 0.39 tolerated(0.22) probably_damaging(0.997) TCGA-GV-A3QH-01 3 133362908 133362908 C T TOPBP1 Missense_Mutation p.E602K 0.34 tolerated(0.48) benign(0.003) TCGA-GV-A3QH-01 3 142840195 142840195 C T CHST2 Silent p.F179F 0.48 TCGA-GV-A3QH-01 3 161221324 161221324 C A OTOL1 Nonsense_Mutation p.S343* 0.40 TCGA-GV-A3QH-01 3 181430953 181430953 G T SOX2 Missense_Mutation p.D269Y 0.37 deleterious(0) probably_damaging(0.988) TCGA-GV-A3QH-01 3 33552094 33552094 T A CLASP2 Missense_Mutation p.T1433S 0.12 tolerated(1) benign(0.05) TCGA-GV-A3QH-01 3 39093559 39093559 G T WDR48 Missense_Mutation p.V15L 0.30 tolerated(0.07) benign(0.002) TCGA-GV-A3QH-01 3 45879482 45879482 C T LZTFL1 Missense_Mutation p.R22H 0.09 deleterious(0.01) benign(0.102) TCGA-GV-A3QH-01 3 62739220 62739220 C T CADPS Missense_Mutation p.A262T 0.47 tolerated(0.13) possibly_damaging(0.499) TCGA-GV-A3QH-01 3 69097297 69097297 T C TMF1 Missense_Mutation p.M187V 0.23 tolerated_low_confidence(0.4) benign(0) TCGA-GV-A3QH-01 4 108641343 108641343 G A PAPSS1 5'UTR 0.60 TCGA-GV-A3QH-01 4 146463782 146463782 A G SMAD1 Missense_Mutation p.Q236R 0.04 tolerated(0.44) benign(0.004) TCGA-GV-A3QH-01 4 187004826 187004826 C T TLR3 Silent p.N662N 0.58 TCGA-GV-A3QH-01 4 26675453 26675453 C T TBC1D19 Silent p.P253P 0.11 TCGA-GV-A3QH-01 4 55139760 55139760 C T PDGFRA Missense_Mutation p.T474M 0.42 tolerated(0.37) benign(0.001) TCGA-GV-A3QH-01 4 57840060 57840060 G C NOA1 Missense_Mutation p.Q425E 0.19 tolerated(0.22) benign(0.02) TCGA-GV-A3QH-01 4 77102129 77102129 C G SCARB2 Missense_Mutation p.R134T 0.69 tolerated(0.5) benign(0.084) TCGA-GV-A3QH-01 5 122881389 122881389 C G CSNK1G3 Nonsense_Mutation p.S11* 0.25 TCGA-GV-A3QH-01 5 129520128 129520128 G A CHSY3 Missense_Mutation p.M431I 0.09 tolerated(0.08) possibly_damaging(0.854) TCGA-GV-A3QH-01 5 137426224 137426224 G A WNT8A Missense_Mutation p.R173K 0.40 tolerated(1) benign(0.006) TCGA-GV-A3QH-01 5 140237156 140237156 C T PCDHA10 Missense_Mutation p.S508L 0.29 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-GV-A3QH-01 5 140537073 140537073 G A PCDHB17 Silent p.L499L 0.31 TCGA-GV-A3QH-01 5 140793096 140793096 G A PCDHGA10 Silent p.V118V 0.37 TCGA-GV-A3QH-01 5 145894805 145894805 G C GPR151 Missense_Mutation p.S291C 0.28 deleterious(0.04) benign(0.259) TCGA-GV-A3QH-01 5 178359437 178359437 A T ZFP2 Missense_Mutation p.I375F 0.10 deleterious(0.01) benign(0.027) TCGA-GV-A3QH-01 5 179201773 179201773 G T MAML1 Silent p.G982G 0.29 TCGA-GV-A3QH-01 5 52351969 52351969 C T ITGA2 Silent p.F362F 0.24 TCGA-GV-A3QH-01 5 5476116 5476116 G C KIAA0947 Missense_Mutation p.W2148C 0.06 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 5 58021940 58021940 C T RAB3C Nonsense_Mutation p.Q122* 0.33 TCGA-GV-A3QH-01 5 68531243 68531243 G C CDK7 Missense_Mutation p.R30T 0.26 tolerated(0.21) benign(0.219) TCGA-GV-A3QH-01 5 68616096 68616096 C G CCDC125 Missense_Mutation p.R91T 0.33 tolerated(0.49) probably_damaging(0.978) TCGA-GV-A3QH-01 5 7773125 7773125 C T ADCY2 Silent p.I765I 0.19 TCGA-GV-A3QH-01 5 893185 893185 G T TRIP13 Missense_Mutation p.E24D 0.42 deleterious(0.02) benign(0.327) TCGA-GV-A3QH-01 5 96500768 96500768 G A RIOK2 Missense_Mutation p.S494L 0.31 deleterious(0) benign(0.365) TCGA-GV-A3QH-01 6 110110816 110110816 G A FIG4 Missense_Mutation p.V706I 0.25 tolerated(0.16) benign(0.001) TCGA-GV-A3QH-01 6 152772267 152772267 G A SYNE1 Missense_Mutation p.S1034F 0.34 benign(0.089) TCGA-GV-A3QH-01 6 159192335 159192335 G C EZR Missense_Mutation p.I300M 0.26 tolerated(0.28) probably_damaging(0.984) TCGA-GV-A3QH-01 6 160239602 160239602 C T PNLDC1 Silent p.P380P 0.33 TCGA-GV-A3QH-01 6 170597419 170597419 C T DLL1 Missense_Mutation p.R193H 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-GV-A3QH-01 6 26393028 26393028 T C BTN2A2 Missense_Mutation p.Y469H 0.11 deleterious(0.02) probably_damaging(1) TCGA-GV-A3QH-01 6 43011253 43011253 G A CUL7 Silent p.L1180L 0.88 TCGA-GV-A3QH-01 6 73110200 73110200 G C RIMS1 Silent p.V1621V 0.18 TCGA-GV-A3QH-01 6 83818645 83818645 C G DOPEY1 Missense_Mutation p.L113V 0.30 deleterious(0) possibly_damaging(0.757) TCGA-GV-A3QH-01 6 97561859 97561859 C T KLHL32 Silent p.V276V 0.43 TCGA-GV-A3QH-01 7 117232685 117232685 G A CFTR Missense_Mutation p.E822K 0.26 tolerated(0.3) benign(0.145) TCGA-GV-A3QH-01 7 120782154 120782154 C A CPED1 Missense_Mutation p.L672M 0.29 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QH-01 7 140159649 140159649 G C MKRN1 Silent p.L134L 0.27 TCGA-GV-A3QH-01 7 1487240 1487240 C T MICALL2 Missense_Mutation p.E166K 0.30 tolerated(0.34) benign(0.003) TCGA-GV-A3QH-01 7 1487250 1487250 C G MICALL2 Missense_Mutation p.Q162H 0.31 deleterious(0.03) possibly_damaging(0.848) TCGA-GV-A3QH-01 7 148802225 148802225 G C ZNF425 Missense_Mutation p.F246L 0.30 tolerated(0.07) benign(0.332) TCGA-GV-A3QH-01 7 149463272 149463272 C G ZNF467 Missense_Mutation p.E107Q 0.42 tolerated(0.08) benign(0.282) TCGA-GV-A3QH-01 7 24745981 24745981 G T DFNA5 Silent p.V335V 0.60 TCGA-GV-A3QH-01 7 26224981 26224981 G A NFE2L3 Missense_Mutation p.V555I 0.12 tolerated(0.22) benign(0.275) TCGA-GV-A3QH-01 7 38543250 38543250 C T AMPH Missense_Mutation p.G69S 0.59 deleterious(0.01) probably_damaging(0.96) TCGA-GV-A3QH-01 7 50468280 50468280 C T IKZF1 Silent p.F463F 0.35 TCGA-GV-A3QH-01 7 50660679 50660679 G C GRB10 Silent p.L585L 0.44 TCGA-GV-A3QH-01 7 70255920 70255920 C T AUTS2 Silent p.L1240L 0.45 TCGA-GV-A3QH-01 7 72193853 72193853 G A TYW1B 3'UTR 0.42 TCGA-GV-A3QH-01 8 101251630 101251630 G C SPAG1 Missense_Mutation p.E760Q 0.37 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QH-01 8 105436562 105436562 G A DPYS Missense_Mutation p.A383V 0.10 deleterious(0) probably_damaging(0.964) TCGA-GV-A3QH-01 8 116616680 116616680 C T TRPS1 Missense_Mutation p.E506K 0.07 tolerated_low_confidence(0.14) benign(0.189) TCGA-GV-A3QH-01 8 11995859 11995859 G A USP17L2 Silent p.H137H 0.33 TCGA-GV-A3QH-01 8 68150646 68150646 C T ARFGEF1 Missense_Mutation p.R1074Q 0.33 tolerated(0.14) possibly_damaging(0.545) TCGA-GV-A3QH-01 8 68150723 68150723 C T ARFGEF1 Silent p.L1048L 0.36 TCGA-GV-A3QH-01 8 77767807 77767807 C A ZFHX4 Missense_Mutation p.Q2884K 0.31 possibly_damaging(0.64) TCGA-GV-A3QH-01 8 79513978 79513978 A T PKIA Missense_Mutation p.E51D 0.45 tolerated(0.56) benign(0.01) TCGA-GV-A3QH-01 9 101570311 101570311 A G GALNT12 Missense_Mutation p.I111V 0.45 tolerated(0.05) benign(0.038) TCGA-GV-A3QH-01 9 103002414 103002414 G T INVS Missense_Mutation p.A230S 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-GV-A3QH-01 9 132590500 132590500 G A C9orf78 Silent p.N270N 0.45 TCGA-GV-A3QH-01 9 137328351 137328351 C A RXRA Missense_Mutation p.S427Y 0.64 deleterious(0) probably_damaging(1) TCGA-GV-A3QH-01 9 35400365 35400365 C T UNC13B Missense_Mutation p.R1388C 0.40 deleterious(0.01) possibly_damaging(0.896) TCGA-GV-A3QH-01 9 71844153 71844153 G T TJP2 Nonsense_Mutation p.E534* 0.66 TCGA-GV-A3QH-01 X 10093067 10093067 C T WWC3 Silent p.R610R 0.30 TCGA-GV-A3QH-01 X 117959145 117959145 G T ZCCHC12 5'UTR 0.88 TCGA-GV-A3QH-01 X 119054602 119054602 C T AKAP14 3'UTR 0.68 TCGA-GV-A3QH-01 X 148072790 148072790 C A AFF2 Missense_Mutation p.S1288R 0.36 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QH-01 X 152815032 152815032 C T ATP2B3 Silent p.S472S 0.83 TCGA-GV-A3QH-01 X 15526533 15526533 G C BMX Missense_Mutation p.K19N 0.84 deleterious(0) probably_damaging(0.975) TCGA-GV-A3QH-01 X 44969327 44969327 G A KDM6A Missense_Mutation p.E1337K 0.73 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QH-01 Y 15435627 15435627 G C UTY Missense_Mutation p.F931L 0.83 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QH-01 Y 15466934 15466934 C T UTY Silent p.L573L 0.62 TCGA-GV-A3QI-01 10 112650398 112650398 G C PDCD4 Silent p.G320G 0.40 TCGA-GV-A3QI-01 10 118327270 118327270 C T PNLIP Missense_Mutation p.T453I 0.89 tolerated(0.12) possibly_damaging(0.505) TCGA-GV-A3QI-01 10 118352009 118352009 T A PNLIPRP1 Missense_Mutation p.F96I 0.93 deleterious(0) probably_damaging(0.979) TCGA-GV-A3QI-01 10 120802195 120802195 C G EIF3A Missense_Mutation p.R946T 0.96 tolerated(0.06) possibly_damaging(0.803) TCGA-GV-A3QI-01 10 124357509 124357509 C G DMBT1 Silent p.T979T 0.95 TCGA-GV-A3QI-01 10 129913193 129913225 AATGGAATCACCAAAGTTGTTGATATCAACTGA - MKI67 In_Frame_Del p.S483_I493del 0.13 TCGA-GV-A3QI-01 10 13481367 13481367 G A BEND7 Silent p.L404L 0.23 TCGA-GV-A3QI-01 10 15875631 15875631 A G FAM188A Missense_Mutation p.M243T 0.64 deleterious(0) possibly_damaging(0.676) TCGA-GV-A3QI-01 10 27052865 27052865 G T ABI1 Missense_Mutation p.S282Y 0.31 tolerated(0.92) benign(0.025) TCGA-GV-A3QI-01 10 28101375 28101375 C G ARMC4 3'UTR 0.27 TCGA-GV-A3QI-01 10 29833990 29833990 T A SVIL Intron 0.22 TCGA-GV-A3QI-01 10 32197606 32197606 T C ARHGAP12 Missense_Mutation p.K60E 0.59 deleterious(0) possibly_damaging(0.898) TCGA-GV-A3QI-01 10 33211203 33211203 C T ITGB1 Silent p.L370L 0.24 TCGA-GV-A3QI-01 10 50820268 50820268 C T SLC18A3 Silent p.Y494Y 0.40 TCGA-GV-A3QI-01 10 55782693 55782693 C T PCDH15 Missense_Mutation p.E829K 0.94 tolerated(0.12) possibly_damaging(0.602) TCGA-GV-A3QI-01 10 5951204 5951204 G A FBXO18 Missense_Mutation p.E374K 0.67 tolerated(1) benign(0.006) TCGA-GV-A3QI-01 10 70206090 70206090 C T DNA2 Silent p.Q426Q 0.56 TCGA-GV-A3QI-01 10 82269119 82269119 G A TSPAN14 Silent p.L114L 0.55 TCGA-GV-A3QI-01 10 95719626 95719626 G A PIPSL RNA 1.00 TCGA-GV-A3QI-01 11 103780401 103780401 T C PDGFD 3'UTR 0.43 TCGA-GV-A3QI-01 11 108175524 108175524 T C ATM Silent p.C1873C 0.32 TCGA-GV-A3QI-01 11 111951225 111951225 T C C11orf57 Missense_Mutation p.L88P 0.22 tolerated(0.18) probably_damaging(1) TCGA-GV-A3QI-01 11 113694349 113694350 TT - USP28 Frame_Shift_Del p.K420Nfs*30 0.36 TCGA-GV-A3QI-01 11 116643573 116643573 T A BUD13 Missense_Mutation p.K36N 0.67 deleterious(0.01) benign(0.393) TCGA-GV-A3QI-01 11 11987391 11987391 G T DKK3 Nonsense_Mutation p.C265* 0.93 TCGA-GV-A3QI-01 11 12020244 12020244 T A DKK3 Missense_Mutation p.H145L 0.97 deleterious(0) possibly_damaging(0.649) TCGA-GV-A3QI-01 11 12247859 12247859 G A MICAL2 Missense_Mutation p.M610I 0.89 deleterious(0.01) benign(0.025) TCGA-GV-A3QI-01 11 124310918 124310918 C A OR8B8 Nonsense_Mutation p.G22* 0.32 TCGA-GV-A3QI-01 11 124440003 124440003 C T OR8A1 Silent p.P13P 0.53 TCGA-GV-A3QI-01 11 129758510 129758510 T A NFRKB Missense_Mutation p.I119F 0.38 tolerated(0.05) unknown(0) TCGA-GV-A3QI-01 11 130785171 130785171 C T SNX19 Missense_Mutation p.G222R 0.53 tolerated(0.18) benign(0.232) TCGA-GV-A3QI-01 11 14856593 14856593 C T PDE3B Missense_Mutation p.P758S 0.50 deleterious(0) probably_damaging(0.994) TCGA-GV-A3QI-01 11 18434294 18434294 G A LDHC Silent p.E10E 0.17 TCGA-GV-A3QI-01 11 20940866 20940866 A T NELL1 Nonsense_Mutation p.K249* 0.37 TCGA-GV-A3QI-01 11 31784979 31784979 G C ELP4 Intron 0.50 TCGA-GV-A3QI-01 11 32781668 32781668 A T CCDC73 Nonsense_Mutation p.L41* 0.04 TCGA-GV-A3QI-01 11 33370305 33370305 C T HIPK3 Silent p.V869V 0.40 TCGA-GV-A3QI-01 11 34226117 34226117 G A ABTB2 Missense_Mutation p.T335I 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3QI-01 11 40136115 40136115 C A LRRC4C Silent p.T576T 0.41 TCGA-GV-A3QI-01 11 44255775 44255775 G T EXT2 Silent p.T672T 0.56 TCGA-GV-A3QI-01 11 46802036 46802036 C T CKAP5 Splice_Site p.X750_splice 0.57 TCGA-GV-A3QI-01 11 48346740 48346740 C T OR4C3 Missense_Mutation p.P83L 0.09 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 11 4936589 4936589 C T OR51G2 Missense_Mutation p.C102Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 11 55798291 55798291 A G OR5AS1 Missense_Mutation p.T133A 0.57 tolerated(0.07) benign(0) TCGA-GV-A3QI-01 11 55890516 55890516 C T OR8H3 Missense_Mutation p.S223F 0.46 tolerated(0.21) benign(0.045) TCGA-GV-A3QI-01 11 56185025 56185025 G A OR5R1 Silent p.I228I 0.41 TCGA-GV-A3QI-01 11 56345172 56345172 A G OR5M10 Missense_Mutation p.V9A 0.38 tolerated(0.08) benign(0.003) TCGA-GV-A3QI-01 11 57313802 57313802 C A SMTNL1 Silent p.A408A 0.38 TCGA-GV-A3QI-01 11 5863035 5863035 G C OR52E6 Missense_Mutation p.F31L 0.31 tolerated(0.34) benign(0.002) TCGA-GV-A3QI-01 11 61026170 61026170 G A VWCE Missense_Mutation p.R949W 0.31 deleterious_low_confidence(0) benign(0.328) TCGA-GV-A3QI-01 11 62292550 62292550 C A AHNAK Silent p.L3113L 0.42 TCGA-GV-A3QI-01 11 63682371 63682371 C T RCOR2 Intron 0.50 TCGA-GV-A3QI-01 11 64679559 64679560 GT - ATG2A Frame_Shift_Del p.T362* 0.27 TCGA-GV-A3QI-01 11 66236342 66236342 G C PELI3 Missense_Mutation p.R64T 0.50 tolerated_low_confidence(0.56) benign(0.003) TCGA-GV-A3QI-01 11 66392723 66392723 G T RBM14 Missense_Mutation p.G459V 0.44 deleterious(0) unknown(0) TCGA-GV-A3QI-01 11 70277332 70277332 G C CTTN Silent p.V367V 0.45 TCGA-GV-A3QI-01 11 71169536 71169536 T C NADSYN1 Missense_Mutation p.L70P 0.29 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 11 72424198 72424198 G C ARAP1 Intron 0.43 TCGA-GV-A3QI-01 11 74911311 74911311 G A SLCO2B1 Missense_Mutation p.V548M 0.42 tolerated(0.05) probably_damaging(0.942) TCGA-GV-A3QI-01 11 76062849 76062849 C G PRKRIR Missense_Mutation p.D449H 0.51 deleterious(0) probably_damaging(0.928) TCGA-GV-A3QI-01 11 76826502 76826502 A G CAPN5 Missense_Mutation p.Y254C 0.31 deleterious(0) probably_damaging(0.954) TCGA-GV-A3QI-01 11 88780576 88780576 G T GRM5 Silent p.A155A 0.57 TCGA-GV-A3QI-01 11 92532922 92532922 A G FAT3 Missense_Mutation p.Y2248C 0.69 probably_damaging(0.992) TCGA-GV-A3QI-01 11 9450663 9450663 G A IPO7 Missense_Mutation p.C504Y 0.85 deleterious(0.02) possibly_damaging(0.702) TCGA-GV-A3QI-01 11 94597966 94597966 C T AMOTL1 Silent p.I734I 0.19 TCGA-GV-A3QI-01 12 100048914 100048914 T A ANKS1B Silent p.P401P 0.58 TCGA-GV-A3QI-01 12 110290444 110290444 G C GLTP Silent p.L182L 0.40 TCGA-GV-A3QI-01 12 112720937 112720937 T C HECTD4 Missense_Mutation p.N358S 0.59 benign(0.194) TCGA-GV-A3QI-01 12 113565880 113565880 C A RASAL1 Missense_Mutation p.D76Y 0.59 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 12 117724011 117724011 A G NOS1 Silent p.T396T 0.29 TCGA-GV-A3QI-01 12 118293355 118293355 T G KSR2 Missense_Mutation p.E117A 0.57 deleterious(0) possibly_damaging(0.748) TCGA-GV-A3QI-01 12 118511557 118511557 C G VSIG10 Missense_Mutation p.R389P 0.57 deleterious(0) probably_damaging(0.922) TCGA-GV-A3QI-01 12 120195199 120195199 C T CIT Silent p.L894L 0.38 TCGA-GV-A3QI-01 12 122865009 122865009 A T CLIP1 5'UTR 0.53 TCGA-GV-A3QI-01 12 123333067 123333067 C T HIP1R Missense_Mutation p.A71V 0.26 tolerated(0.79) possibly_damaging(0.817) TCGA-GV-A3QI-01 12 123782653 123782653 T A SBNO1 Missense_Mutation p.Y1304F 0.33 tolerated(0.08) benign(0.022) TCGA-GV-A3QI-01 12 124403343 124403343 C T DNAH10 Silent p.L3667L 0.29 TCGA-GV-A3QI-01 12 132241141 132241141 A T SFSWAP Nonsense_Mutation p.K558* 0.40 TCGA-GV-A3QI-01 12 133778780 133778780 G T ZNF268 Missense_Mutation p.D170Y 0.12 deleterious(0.04) benign(0.037) TCGA-GV-A3QI-01 12 16036570 16036570 G T STRAP Missense_Mutation p.D70Y 0.61 deleterious(0.01) probably_damaging(0.988) TCGA-GV-A3QI-01 12 20886039 20886039 G C SLCO1C1 Splice_Site p.X461_splice 0.52 TCGA-GV-A3QI-01 12 21428335 21428335 G T SLCO1A2 Missense_Mutation p.S545Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-GV-A3QI-01 12 22643100 22643100 T G C2CD5 Silent p.R439R 0.18 TCGA-GV-A3QI-01 12 44926364 44926364 C T NELL2 Missense_Mutation p.D652N 0.52 deleterious(0.03) probably_damaging(0.96) TCGA-GV-A3QI-01 12 4599748 4599748 C T C12orf4 Missense_Mutation p.M502I 0.45 deleterious(0) possibly_damaging(0.688) TCGA-GV-A3QI-01 12 48191920 48191920 G C HDAC7 Silent p.V144V 0.45 TCGA-GV-A3QI-01 12 48375906 48375906 C A COL2A1 Missense_Mutation p.G780V 0.38 probably_damaging(1) TCGA-GV-A3QI-01 12 48739259 48739259 T A ZNF641 Splice_Site p.X107_splice 0.50 TCGA-GV-A3QI-01 12 49420164 49420164 C G KMT2D Missense_Mutation p.Q5195H 0.43 unknown(0) TCGA-GV-A3QI-01 12 49420438 49420438 C T KMT2D Missense_Mutation p.C5104Y 0.47 unknown(0) TCGA-GV-A3QI-01 12 49579351 49579351 G C TUBA1A Missense_Mutation p.H266Q 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-GV-A3QI-01 12 49745187 49745187 C A DNAJC22 Missense_Mutation p.L310M 0.43 deleterious(0.05) possibly_damaging(0.447) TCGA-GV-A3QI-01 12 50189721 50189721 G T NCKAP5L Nonsense_Mutation p.S641* 0.75 TCGA-GV-A3QI-01 12 52312784 52312784 A G ACVRL1 Missense_Mutation p.Y421C 0.49 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 12 52647090 52647090 G A KRT7 3'Flank 0.26 TCGA-GV-A3QI-01 12 52758771 52758771 C T KRT85 Missense_Mutation p.E202K 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-GV-A3QI-01 12 56143318 56143318 C G GDF11 Missense_Mutation p.N292K 0.25 tolerated(0.95) benign(0.063) TCGA-GV-A3QI-01 12 56713447 56713447 C A PAN2 Missense_Mutation p.E1020D 0.20 deleterious(0.02) possibly_damaging(0.618) TCGA-GV-A3QI-01 12 57033894 57033894 G A ATP5B Missense_Mutation p.S386L 0.33 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-GV-A3QI-01 12 662804 662804 A T B4GALNT3 Missense_Mutation p.Q572L 0.48 tolerated(0.1) probably_damaging(0.962) TCGA-GV-A3QI-01 12 6882428 6882428 C A LAG3 Silent p.P43P 0.60 TCGA-GV-A3QI-01 12 70070964 70070964 G A BEST3 Missense_Mutation p.T237I 0.18 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 12 72332708 72332708 C T TPH2 5'UTR 0.20 TCGA-GV-A3QI-01 12 7805283 7805283 T C APOBEC1 Missense_Mutation p.N65D 0.17 deleterious(0.02) possibly_damaging(0.855) TCGA-GV-A3QI-01 12 8083210 8083210 G T SLC2A3 Missense_Mutation p.S180Y 0.55 deleterious(0) probably_damaging(0.954) TCGA-GV-A3QI-01 12 85695132 85695132 C T ALX1 Missense_Mutation p.T287I 0.23 deleterious(0.01) benign(0.091) TCGA-GV-A3QI-01 12 8800748 8800748 G A MFAP5 Missense_Mutation p.S154F 0.47 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 12 88482860 88482860 C A CEP290 Missense_Mutation p.K1326N 0.54 possibly_damaging(0.841) TCGA-GV-A3QI-01 12 90004246 90004246 G A ATP2B1 Nonsense_Mutation p.R763* 0.26 TCGA-GV-A3QI-01 13 100634920 100634920 G C ZIC2 Missense_Mutation p.R201P 0.17 deleterious(0) probably_damaging(0.986) TCGA-GV-A3QI-01 13 101315400 101315400 C A TMTC4 Missense_Mutation p.V124L 0.44 tolerated(0.67) benign(0.001) TCGA-GV-A3QI-01 13 25362208 25362208 G C RNF17 Missense_Mutation p.E232Q 0.56 tolerated(0.1) benign(0.003) TCGA-GV-A3QI-01 13 32869562 32869562 C G FRY Missense_Mutation p.L3003V 0.48 tolerated_low_confidence(0.26) benign(0.038) TCGA-GV-A3QI-01 13 39265823 39265823 G C FREM2 Missense_Mutation p.D1448H 0.50 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QI-01 14 100402395 100402395 G A EML1 Missense_Mutation p.D666N 0.23 deleterious(0) probably_damaging(0.959) TCGA-GV-A3QI-01 14 102675273 102675273 G A WDR20 Missense_Mutation p.G287S 0.93 tolerated(0.1) possibly_damaging(0.826) TCGA-GV-A3QI-01 14 103188691 103188691 A T RCOR1 Missense_Mutation p.S453C 0.55 tolerated(0.08) benign(0.005) TCGA-GV-A3QI-01 14 105410488 105410488 G A AHNAK2 Missense_Mutation p.P3767L 0.43 probably_damaging(0.991) TCGA-GV-A3QI-01 14 106207975 106207975 G T IGHG1 Silent p.T276T 0.55 TCGA-GV-A3QI-01 14 106209264 106209264 C T IGHG1 Missense_Mutation p.G49S 0.45 tolerated(0.07) probably_damaging(0.991) TCGA-GV-A3QI-01 14 106237540 106237540 C G IGHG3 Silent p.V68V 0.35 TCGA-GV-A3QI-01 14 23528466 23528466 C T ACIN1 Missense_Mutation p.R1306K 0.21 unknown(0) TCGA-GV-A3QI-01 14 24422979 24422979 A G DHRS4 5'UTR 0.53 TCGA-GV-A3QI-01 14 24738749 24738749 G A RABGGTA Silent p.P193P 0.19 TCGA-GV-A3QI-01 14 24800296 24800296 G A ADCY4 Silent p.A286A 0.45 TCGA-GV-A3QI-01 14 29237880 29237880 G A FOXG1 Silent p.T465T 0.44 TCGA-GV-A3QI-01 14 35240754 35240755 CT - BAZ1A Frame_Shift_Del p.E1088Afs*4 0.21 TCGA-GV-A3QI-01 14 45512888 45512888 G C FAM179B Splice_Site p.X1271_splice 0.16 TCGA-GV-A3QI-01 14 50649252 50649252 C T SOS2 Missense_Mutation p.D263N 0.34 deleterious(0) probably_damaging(0.971) TCGA-GV-A3QI-01 14 57083924 57083924 T C TMEM260 Missense_Mutation p.V322A 0.24 tolerated(0.63) benign(0.001) TCGA-GV-A3QI-01 14 61486258 61486258 G C SLC38A6 Splice_Site p.X122_splice 0.17 TCGA-GV-A3QI-01 14 64153045 64153045 C A SGPP1 Silent p.R368R 0.30 TCGA-GV-A3QI-01 14 64898301 64898301 C T MTHFD1 Missense_Mutation p.L455F 0.58 deleterious(0) probably_damaging(0.986) TCGA-GV-A3QI-01 14 67940532 67940532 A G TMEM229B Silent p.L37L 0.38 TCGA-GV-A3QI-01 14 68264756 68264756 C G ZFYVE26 Missense_Mutation p.K741N 0.69 deleterious(0) probably_damaging(0.964) TCGA-GV-A3QI-01 14 75142403 75142403 T A AREL1 Missense_Mutation p.K360M 0.63 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QI-01 14 90767622 90767622 G C NRDE2 Missense_Mutation p.F502L 0.65 deleterious(0) probably_damaging(0.925) TCGA-GV-A3QI-01 14 91077094 91077094 G A TTC7B Missense_Mutation p.P653L 0.06 deleterious(0.03) possibly_damaging(0.548) TCGA-GV-A3QI-01 14 94404063 94404063 G C ASB2 Silent p.A584A 0.64 TCGA-GV-A3QI-01 15 34640693 34640693 A G NUTM1 Silent p.P180P 0.59 TCGA-GV-A3QI-01 15 35045148 35045148 G A GJD2 Missense_Mutation p.P166L 0.33 deleterious(0.04) benign(0.118) TCGA-GV-A3QI-01 15 43712625 43712625 T G TP53BP1 Missense_Mutation p.Y1520S 0.06 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 15 45713304 45713304 C T SPATA5L1 Silent p.L720L 0.27 TCGA-GV-A3QI-01 15 54306784 54306784 G C UNC13C Missense_Mutation p.E562Q 0.74 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GV-A3QI-01 15 55647054 55647054 A G PIGB Missense_Mutation p.K466E 0.68 tolerated(1) benign(0.002) TCGA-GV-A3QI-01 15 65459104 65459104 C A CLPX Missense_Mutation p.K126N 0.19 deleterious(0.03) possibly_damaging(0.484) TCGA-GV-A3QI-01 15 69677081 69677081 G A PAQR5 Nonsense_Mutation p.W82* 0.27 TCGA-GV-A3QI-01 15 70342387 70342387 A G TLE3 3'UTR 0.60 TCGA-GV-A3QI-01 15 70389121 70389121 C G TLE3 Missense_Mutation p.R6T 0.23 deleterious(0) probably_damaging(0.997) TCGA-GV-A3QI-01 15 74628183 74628183 C T CCDC33 Intron 0.74 TCGA-GV-A3QI-01 15 75013618 75013618 G T CYP1A1 Missense_Mutation p.S363Y 0.30 deleterious(0.02) benign(0.285) TCGA-GV-A3QI-01 15 75981450 75981450 G - CSPG4 Frame_Shift_Del p.T653Rfs*2 0.48 TCGA-GV-A3QI-01 15 79748439 79748439 G A KIAA1024 Splice_Site 0.53 TCGA-GV-A3QI-01 15 84706492 84706492 A T ADAMTSL3 Missense_Mutation p.K1670N 0.41 deleterious(0) possibly_damaging(0.688) TCGA-GV-A3QI-01 16 11794368 11794368 T A TXNDC11 Missense_Mutation p.K282N 0.62 deleterious(0.02) possibly_damaging(0.848) TCGA-GV-A3QI-01 16 20380853 20380853 G A PDILT Silent p.L359L 0.62 TCGA-GV-A3QI-01 16 28617545 28617545 C G SULT1A1 Missense_Mutation p.E203Q 0.85 deleterious(0.01) possibly_damaging(0.817) TCGA-GV-A3QI-01 16 28911941 28911941 C A ATP2A1 Missense_Mutation p.P602T 0.59 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 16 28911981 28911981 G A ATP2A1 Missense_Mutation p.R615H 0.52 tolerated(0.12) possibly_damaging(0.886) TCGA-GV-A3QI-01 16 28947484 28947484 G C CD19 Silent p.L319L 0.29 TCGA-GV-A3QI-01 16 31090894 31090894 C T ZNF646 Silent p.V1083V 0.32 TCGA-GV-A3QI-01 16 3117416 3117416 G - IL32 Frame_Shift_Del 0.27 TCGA-GV-A3QI-01 16 31439103 31439103 G T COX6A2 Missense_Mutation p.H96N 0.38 tolerated(0.15) benign(0) TCGA-GV-A3QI-01 16 31476086 31476086 A C ARMC5 Missense_Mutation p.E581A 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-GV-A3QI-01 16 32893922 32893922 T A RP11-989E6.3 5'Flank 0.33 TCGA-GV-A3QI-01 16 53493502 53493523 CAAGTGAGAAACTGGAACAGAT - RBL2 Frame_Shift_Del p.P440Lfs*17 0.38 TCGA-GV-A3QI-01 16 56642556 56642556 C T MT2A 5'UTR 0.96 TCGA-GV-A3QI-01 16 57416799 57416799 G T CX3CL1 Missense_Mutation p.G350V 0.86 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 16 57685294 57685294 G T GPR56 Missense_Mutation p.D83Y 0.89 tolerated(0.09) benign(0.092) TCGA-GV-A3QI-01 16 58437029 58437029 C A GINS3 Missense_Mutation p.L111M 0.07 tolerated(0.17) possibly_damaging(0.888) TCGA-GV-A3QI-01 16 67290524 67290524 C A SLC9A5 Missense_Mutation p.S355Y 0.95 tolerated(0.22) probably_damaging(0.976) TCGA-GV-A3QI-01 16 67693135 67693135 C T ACD Missense_Mutation p.A250T 0.96 tolerated(0.46) benign(0.032) TCGA-GV-A3QI-01 16 69729203 69729203 C A NFAT5 Missense_Mutation p.Q1527K 0.98 probably_damaging(0.966) TCGA-GV-A3QI-01 16 77896683 77896683 C T VAT1L Silent p.N206N 0.94 TCGA-GV-A3QI-01 16 88105749 88105749 C G BANP Silent p.L473L 0.95 TCGA-GV-A3QI-01 16 90124306 90124306 G A PRDM7 3'UTR 0.97 TCGA-GV-A3QI-01 17 13977769 13977769 G A COX10 Missense_Mutation p.R58H 0.41 tolerated_low_confidence(0.1) benign(0.052) TCGA-GV-A3QI-01 17 17697690 17697690 T G RAI1 Missense_Mutation p.H476Q 0.29 tolerated(0.2) benign(0.303) TCGA-GV-A3QI-01 17 19286175 19286175 G A MAPK7 Missense_Mutation p.G738E 0.47 deleterious(0) probably_damaging(0.982) TCGA-GV-A3QI-01 17 21207797 21207797 G T MAP2K3 Missense_Mutation p.G210C 0.13 deleterious(0) probably_damaging(0.96) TCGA-GV-A3QI-01 17 2585126 2585134 TTTCCTCTG - PAFAH1B1 3'UTR 0.31 TCGA-GV-A3QI-01 17 3100986 3100986 C T OR1A2 Silent p.P58P 0.40 TCGA-GV-A3QI-01 17 3477062 3477062 G C SHPK Missense_Mutation p.F656L 0.38 tolerated(0.06) benign(0.15) TCGA-GV-A3QI-01 17 35454054 35454054 C G ACACA Silent p.L2256L 0.63 TCGA-GV-A3QI-01 17 38812797 38812797 G C KRT222 Missense_Mutation p.L249V 0.38 deleterious(0) probably_damaging(0.991) TCGA-GV-A3QI-01 17 39165064 39165064 G A KRTAP3-1 Missense_Mutation p.P88L 0.28 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-GV-A3QI-01 17 3919633 3919633 T C ZZEF1 Missense_Mutation p.N2710S 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-GV-A3QI-01 17 39646100 39646100 C T KRT36 Missense_Mutation p.C6Y 0.17 tolerated(0.09) probably_damaging(0.996) TCGA-GV-A3QI-01 17 40269467 40269468 - A KAT2A Frame_Shift_Ins p.V526Cfs*11 0.22 TCGA-GV-A3QI-01 17 40635081 40635081 C A ATP6V0A1 Missense_Mutation p.P255T 0.23 deleterious(0.01) probably_damaging(1) TCGA-GV-A3QI-01 17 4098254 4098254 C T ANKFY1 Intron 0.55 TCGA-GV-A3QI-01 17 43922946 43922946 G A SPPL2C Missense_Mutation p.G225D 0.43 tolerated(0.22) benign(0.028) TCGA-GV-A3QI-01 17 44067379 44067379 A G MAPT Missense_Mutation p.K440E 0.48 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 17 4536454 4536454 C A ALOX15 Nonsense_Mutation p.E469* 0.10 TCGA-GV-A3QI-01 17 45752045 45752045 C G KPNB1 Missense_Mutation p.I603M 0.06 tolerated(0.11) probably_damaging(0.942) TCGA-GV-A3QI-01 17 4797304 4797304 C T MINK1 Silent p.S862S 0.41 TCGA-GV-A3QI-01 17 56327830 56327830 G A LPO Missense_Mutation p.D210N 0.32 deleterious(0.03) probably_damaging(1) TCGA-GV-A3QI-01 17 60755974 60755974 A T MRC2 Missense_Mutation p.H721L 0.20 tolerated(0.36) possibly_damaging(0.507) TCGA-GV-A3QI-01 17 61987497 61987497 T A CSHL1 Intron 0.39 TCGA-GV-A3QI-01 17 63848079 63848079 T G CEP112 Missense_Mutation p.Q746P 0.68 deleterious(0) probably_damaging(0.994) TCGA-GV-A3QI-01 17 6493200 6493200 C T KIAA0753 Missense_Mutation p.M895I 0.44 deleterious(0.01) probably_damaging(0.916) TCGA-GV-A3QI-01 17 65052400 65052400 C T CACNG1 3'UTR 0.61 TCGA-GV-A3QI-01 17 6674105 6674105 A T XAF1 Silent p.I217I 0.61 TCGA-GV-A3QI-01 17 68171368 68171368 A G KCNJ2 Missense_Mutation p.E63G 0.08 tolerated(0.24) benign(0.035) TCGA-GV-A3QI-01 17 72353284 72353284 G A BTBD17 Missense_Mutation p.L317F 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-GV-A3QI-01 17 7330284 7330284 C A C17orf74 Missense_Mutation p.P325H 0.66 deleterious(0.01) benign(0) TCGA-GV-A3QI-01 17 73746222 73746222 T A ITGB4 Missense_Mutation p.M1116K 0.17 tolerated_low_confidence(0.28) benign(0.001) TCGA-GV-A3QI-01 17 7476125 7476125 G A SENP3 3'Flank 0.50 TCGA-GV-A3QI-01 17 7646490 7646490 A G DNAH2 Intron 0.62 TCGA-GV-A3QI-01 17 76554223 76554223 G A DNAH17 Silent p.G715G 0.55 TCGA-GV-A3QI-01 17 7736874 7736874 G T DNAH2 3'UTR 0.50 TCGA-GV-A3QI-01 17 7800409 7800409 C G CHD3 Missense_Mutation p.I631M 0.16 possibly_damaging(0.639) TCGA-GV-A3QI-01 17 78179329 78179329 G C CARD14 Splice_Site p.X857_splice 0.23 TCGA-GV-A3QI-01 17 79866776 79866776 T G PCYT2 Missense_Mutation p.N106H 0.32 deleterious(0.02) benign(0.127) TCGA-GV-A3QI-01 17 80772748 80772748 G T TBCD Missense_Mutation p.G419V 0.63 deleterious(0) probably_damaging(0.997) TCGA-GV-A3QI-01 18 14542642 14542642 C G POTEC Missense_Mutation p.K168N 0.47 tolerated(0.1) probably_damaging(0.987) TCGA-GV-A3QI-01 18 19192360 19192360 G T SNRPD1 5'UTR 0.41 TCGA-GV-A3QI-01 18 23637560 23637560 C G SS18 Missense_Mutation p.Q126H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-GV-A3QI-01 18 23637569 23637569 C T SS18 Missense_Mutation p.M123I 0.44 tolerated_low_confidence(0.71) benign(0.164) TCGA-GV-A3QI-01 18 2688390 2688390 A G SMCHD1 Splice_Site p.X213_splice 0.49 TCGA-GV-A3QI-01 18 28926104 28926104 G C DSG1 Missense_Mutation p.M681I 0.46 tolerated(0.22) benign(0.038) TCGA-GV-A3QI-01 18 34378506 34378506 G C TPGS2 Missense_Mutation p.T188S 0.50 tolerated(0.47) benign(0.009) TCGA-GV-A3QI-01 18 44035973 44035973 G A RNF165 Missense_Mutation p.G285R 0.46 deleterious(0.04) benign(0.007) TCGA-GV-A3QI-01 18 60527662 60527679 CTTTAGGTTGCATCCCAG - PHLPP1 Splice_Site p.X634_splice 0.29 TCGA-GV-A3QI-01 18 61465923 61465923 G C SERPINB7 Missense_Mutation p.K180N 0.23 tolerated(0.13) benign(0.156) TCGA-GV-A3QI-01 18 72999303 72999303 G A TSHZ1 Silent p.T602T 0.53 TCGA-GV-A3QI-01 18 74580691 74580691 G A ZNF236 Silent p.L136L 0.52 TCGA-GV-A3QI-01 18 74700837 74700837 C T RP11-862L9.3 3'Flank 0.44 TCGA-GV-A3QI-01 18 8784103 8784103 G T SOGA2 Silent p.G331G 0.55 TCGA-GV-A3QI-01 19 10084485 10084485 C T COL5A3 Missense_Mutation p.G1187S 0.70 probably_damaging(0.998) TCGA-GV-A3QI-01 19 10225253 10225253 A G PPAN-P2RY11 Missense_Mutation p.M742V 0.16 tolerated_low_confidence(0.07) benign(0.002) TCGA-GV-A3QI-01 19 11558507 11558507 G A PRKCSH Splice_Site p.X337_splice 0.62 TCGA-GV-A3QI-01 19 12501270 12540961 19:12501270-12540961 - ZNF799 large deletion 0.20 TCGA-GV-A3QI-01 19 12984213 12984213 G T MAST1 Silent p.S1113S 0.57 TCGA-GV-A3QI-01 19 13039382 13039382 C A FARSA Missense_Mutation p.R231L 0.66 deleterious(0.01) probably_damaging(0.995) TCGA-GV-A3QI-01 19 13201190 13201190 C A NFIX 3'UTR 0.21 TCGA-GV-A3QI-01 19 13325352 13325352 G T CACNA1A Silent p.S1934S 0.59 TCGA-GV-A3QI-01 19 14263685 14263685 A T LPHN1 Missense_Mutation p.C1117S 0.28 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 19 14640523 14640523 G A TECR Silent p.E5E 0.12 TCGA-GV-A3QI-01 19 17312810 17312810 A T MYO9B Missense_Mutation p.I1547F 0.64 deleterious(0) benign(0.342) TCGA-GV-A3QI-01 19 2216762 2216762 G A DOT1L Silent p.S802S 0.18 TCGA-GV-A3QI-01 19 22379459 22379459 G A ZNF676 5'UTR 0.67 TCGA-GV-A3QI-01 19 32845599 32845599 C G ZNF507 Missense_Mutation p.S621R 0.07 tolerated(0.13) probably_damaging(0.969) TCGA-GV-A3QI-01 19 36831467 36831467 C T ZFP14 Missense_Mutation p.E421K 0.20 tolerated(0.09) probably_damaging(0.997) TCGA-GV-A3QI-01 19 37005871 37005871 T - ZNF260 Frame_Shift_Del p.A91Pfs*233 0.45 TCGA-GV-A3QI-01 19 40354440 40354440 C T FCGBP Silent p.K5343K 0.92 TCGA-GV-A3QI-01 19 41115484 41115484 G A LTBP4 Missense_Mutation p.G559E 0.97 deleterious(0.02) probably_damaging(1) TCGA-GV-A3QI-01 19 4168393 4168393 A G CREB3L3 Missense_Mutation p.K254E 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-GV-A3QI-01 19 42092192 42092192 G A CEACAM21 Splice_Site p.X284_splice 0.95 TCGA-GV-A3QI-01 19 4361711 4361711 G A SH3GL1 Silent p.D331D 0.05 TCGA-GV-A3QI-01 19 4504533 4504533 G A PLIN4 Nonsense_Mutation p.Q1338* 0.82 TCGA-GV-A3QI-01 19 47178362 47178362 G C PRKD2 Missense_Mutation p.I784M 1.00 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 19 50393824 50393824 C A IL4I1 Silent p.L291L 0.95 TCGA-GV-A3QI-01 19 51140567 51140567 C T SYT3 Silent p.Q34Q 0.97 TCGA-GV-A3QI-01 19 51298162 51298162 C T ACPT Missense_Mutation p.A369V 0.99 tolerated(1) benign(0.059) TCGA-GV-A3QI-01 19 52918824 52918824 C T ZNF528 Missense_Mutation p.P240L 0.14 deleterious(0.04) possibly_damaging(0.742) TCGA-GV-A3QI-01 19 53770252 53770252 G T VN1R4 Missense_Mutation p.P223T 0.96 tolerated(0.07) benign(0.071) TCGA-GV-A3QI-01 19 54848849 54848849 C T LILRA4 Silent p.E258E 0.97 TCGA-GV-A3QI-01 19 55718252 55718252 G T PTPRH Missense_Mutation p.P53T 0.95 probably_damaging(0.99) TCGA-GV-A3QI-01 19 6479898 6479898 C A DENND1C Missense_Mutation p.R33L 0.62 tolerated(0.08) possibly_damaging(0.889) TCGA-GV-A3QI-01 19 6501571 6501571 C T TUBB4A Missense_Mutation p.D41N 0.78 tolerated_low_confidence(0.06) benign(0.001) TCGA-GV-A3QI-01 19 691938 691938 G T PRSS57 Missense_Mutation p.Q101K 0.40 deleterious(0) possibly_damaging(0.822) TCGA-GV-A3QI-01 19 7518383 7518383 A T ARHGEF18 Missense_Mutation p.Q441L 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-GV-A3QI-01 19 8182137 8182137 C T FBN3 Missense_Mutation p.V1168M 0.18 deleterious(0.04) benign(0.007) TCGA-GV-A3QI-01 19 8922561 8922561 T G ZNF558 Missense_Mutation p.H202P 0.17 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 19 8969284 8969284 C G MUC16 Missense_Mutation p.E14354Q 0.17 possibly_damaging(0.801) TCGA-GV-A3QI-01 19 9058783 9058783 T C MUC16 Missense_Mutation p.I9555V 0.84 unknown(0) TCGA-GV-A3QI-01 19 9065491 9065491 C G MUC16 Missense_Mutation p.A7319P 0.73 unknown(0) TCGA-GV-A3QI-01 19 9086871 9086871 G T MUC16 Silent p.A1648A 0.78 TCGA-GV-A3QI-01 19 9453770 9453770 G A ZNF559 3'UTR 0.22 TCGA-GV-A3QI-01 19 9940689 9940689 G A UBL5 3'UTR 0.19 TCGA-GV-A3QI-01 1 10364708 10364708 C T KIF1B Intron 0.38 TCGA-GV-A3QI-01 1 107979293 107979293 A T NTNG1 Missense_Mutation p.Y421F 0.46 tolerated(0.16) benign(0.001) TCGA-GV-A3QI-01 1 114380599 114380599 G C PTPN22 Missense_Mutation p.Q475E 0.95 deleterious(0.01) benign(0.011) TCGA-GV-A3QI-01 1 142803494 142803494 T A RP11-423O2.5 RNA 0.12 TCGA-GV-A3QI-01 1 144877097 144877097 G A PDE4DIP Silent p.F1530F 0.44 TCGA-GV-A3QI-01 1 144951990 144951990 G A PDE4DIP Intron 0.15 TCGA-GV-A3QI-01 1 150478109 150478109 G C TARS2 Missense_Mutation p.D646H 0.17 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 1 151006538 151006538 G A PRUNE Missense_Mutation p.G397D 0.14 tolerated(0.28) benign(0.022) TCGA-GV-A3QI-01 1 153921785 153921785 C G CRTC2 Missense_Mutation p.V494L 0.11 tolerated(0.75) possibly_damaging(0.846) TCGA-GV-A3QI-01 1 153998045 153998045 G A NUP210L Silent p.V1365V 0.67 TCGA-GV-A3QI-01 1 154932130 154932130 G A PYGO2 Missense_Mutation p.P116S 0.88 tolerated(0.53) possibly_damaging(0.857) TCGA-GV-A3QI-01 1 155030787 155030787 G A ADAM15 Missense_Mutation p.R596Q 0.19 tolerated(0.51) benign(0.01) TCGA-GV-A3QI-01 1 156640230 156640230 C T NES Silent p.Q1250Q 0.18 TCGA-GV-A3QI-01 1 158450082 158450082 G C OR10R2 Missense_Mutation p.G139R 0.71 deleterious(0) probably_damaging(0.997) TCGA-GV-A3QI-01 1 158747267 158747267 T C OR6N2 Silent p.A53A 0.74 TCGA-GV-A3QI-01 1 159166685 159166685 C T CADM3 Nonsense_Mutation p.Q297* 0.74 TCGA-GV-A3QI-01 1 159683378 159683378 G A CRP Silent p.N204N 0.14 TCGA-GV-A3QI-01 1 160326392 160326392 G T NCSTN Missense_Mutation p.D548Y 0.15 deleterious(0.01) possibly_damaging(0.497) TCGA-GV-A3QI-01 1 160466111 160466111 G A SLAMF6 Missense_Mutation p.P41L 0.10 tolerated(0.15) possibly_damaging(0.64) TCGA-GV-A3QI-01 1 161176202 161176202 G A NDUFS2 Missense_Mutation p.D70N 0.10 tolerated(0.4) benign(0.002) TCGA-GV-A3QI-01 1 16353844 16353844 C A CLCNKA Missense_Mutation p.S232Y 0.95 deleterious(0) probably_damaging(0.964) TCGA-GV-A3QI-01 1 165414106 165414106 T C RXRG Missense_Mutation p.M9V 0.33 deleterious_low_confidence(0.03) benign(0) TCGA-GV-A3QI-01 1 165532930 165532930 G C LRRC52 Missense_Mutation p.V271L 0.11 deleterious(0) possibly_damaging(0.786) TCGA-GV-A3QI-01 1 166891923 166891923 T C ILDR2 Missense_Mutation p.Y373C 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-GV-A3QI-01 1 167487650 167487650 A T CD247 Missense_Mutation p.I18N 0.10 tolerated(0.22) benign(0.014) TCGA-GV-A3QI-01 1 167962475 167962475 G A DCAF6 Missense_Mutation p.G234S 0.42 tolerated(0.19) probably_damaging(0.996) TCGA-GV-A3QI-01 1 171162616 171162616 G A FMO2 Missense_Mutation p.R92K 0.10 tolerated(0.22) benign(0.022) TCGA-GV-A3QI-01 1 177899756 177899756 G T SEC16B Missense_Mutation p.S1012Y 0.17 tolerated(1) benign(0.004) TCGA-GV-A3QI-01 1 193074747 193074747 C T GLRX2 Missense_Mutation p.V8M 0.15 tolerated_low_confidence(0.24) benign(0.03) TCGA-GV-A3QI-01 1 200558410 200558410 G T KIF14 Missense_Mutation p.H1017N 0.31 tolerated(0.64) benign(0.004) TCGA-GV-A3QI-01 1 204170901 204170901 C T GOLT1A Silent p.L52L 0.71 TCGA-GV-A3QI-01 1 205561360 205561360 C T MFSD4 Silent p.L414L 0.70 TCGA-GV-A3QI-01 1 206566186 206566186 C T SRGAP2 Silent p.S123S 0.08 TCGA-GV-A3QI-01 1 209935923 209935923 G T TRAF3IP3 Missense_Mutation p.D137Y 0.78 deleterious(0.01) probably_damaging(0.938) TCGA-GV-A3QI-01 1 21582529 21582529 C G ECE1 Missense_Mutation p.E311Q 0.82 deleterious(0) possibly_damaging(0.899) TCGA-GV-A3QI-01 1 216737663 216737663 C T ESRRG Missense_Mutation p.D266N 0.91 tolerated(0.1) possibly_damaging(0.884) TCGA-GV-A3QI-01 1 21795335 21795335 G T NBPF3 Missense_Mutation p.Q96H 1.00 deleterious(0) benign(0.022) TCGA-GV-A3QI-01 1 21795351 21795351 C G NBPF3 Missense_Mutation p.Q102E 1.00 tolerated(0.18) benign(0.217) TCGA-GV-A3QI-01 1 228238369 228238369 C A WNT3A Nonsense_Mutation p.S109* 0.10 TCGA-GV-A3QI-01 1 235964228 235964228 C T LYST Silent p.E1294E 0.21 TCGA-GV-A3QI-01 1 237016251 237016251 G A MTR Missense_Mutation p.G606S 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-GV-A3QI-01 1 240072203 240072203 C G CHRM3 Silent p.V484V 0.19 TCGA-GV-A3QI-01 1 240072271 240072271 A T CHRM3 Missense_Mutation p.Y507F 0.24 deleterious(0) probably_damaging(0.98) TCGA-GV-A3QI-01 1 247875413 247875414 AA - OR6F1 Frame_Shift_Del p.F215Cfs*79 0.45 TCGA-GV-A3QI-01 1 247875858 247875858 G T OR6F1 Missense_Mutation p.S67Y 0.11 deleterious(0) probably_damaging(0.966) TCGA-GV-A3QI-01 1 248756394 248756394 G C OR2T10 Missense_Mutation p.H226D 0.20 tolerated(0.19) possibly_damaging(0.864) TCGA-GV-A3QI-01 1 27949568 27949568 T C FGR Missense_Mutation p.H105R 1.00 tolerated(0.22) possibly_damaging(0.661) TCGA-GV-A3QI-01 1 34083156 34083156 C A CSMD2 Missense_Mutation p.E1923D 0.97 tolerated(1) benign(0.013) TCGA-GV-A3QI-01 1 36769407 36769407 G A THRAP3 Missense_Mutation p.R886H 0.90 deleterious(0.03) benign(0.004) TCGA-GV-A3QI-01 1 39800781 39800781 G T MACF1 Intron 0.86 TCGA-GV-A3QI-01 1 40131301 40131301 G A NT5C1A Missense_Mutation p.R109W 1.00 deleterious(0) probably_damaging(0.954) TCGA-GV-A3QI-01 1 51702486 51702486 C G RNF11 Missense_Mutation p.Q20E 0.93 tolerated(1) benign(0) TCGA-GV-A3QI-01 1 54670971 54670971 G A MRPL37 Silent p.P178P 0.85 TCGA-GV-A3QI-01 1 75039034 75039034 T A C1orf173 Missense_Mutation p.D787V 0.96 deleterious(0) probably_damaging(0.966) TCGA-GV-A3QI-01 1 90398656 90398656 T A LRRC8D Missense_Mutation p.L10H 0.11 deleterious(0) probably_damaging(0.975) TCGA-GV-A3QI-01 1 91404364 91404364 C G ZNF644 Missense_Mutation p.K849N 0.79 deleterious(0) possibly_damaging(0.597) TCGA-GV-A3QI-01 1 91784664 91784664 A G HFM1 Missense_Mutation p.L928P 0.77 tolerated(0.15) benign(0.001) TCGA-GV-A3QI-01 1 93730216 93730216 A G CCDC18 Intron 0.27 TCGA-GV-A3QI-01 20 13052966 13052966 C G SPTLC3 Missense_Mutation p.I122M 0.31 deleterious(0.04) possibly_damaging(0.824) TCGA-GV-A3QI-01 20 30193268 30193268 C G ID1 Missense_Mutation p.S26R 0.27 tolerated(0.65) benign(0.015) TCGA-GV-A3QI-01 20 34057721 34057721 C G CEP250 Silent p.T286T 0.13 TCGA-GV-A3QI-01 20 3730479 3730479 C T HSPA12B Silent p.L340L 0.20 TCGA-GV-A3QI-01 20 42935833 42935833 G C FITM2 Missense_Mutation p.P74R 0.72 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 20 43115337 43115337 A T TTPAL Silent p.I247I 0.38 TCGA-GV-A3QI-01 20 44511647 44511647 G T ZSWIM1 Missense_Mutation p.W139L 0.25 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 20 44751393 44751393 T C CD40 Missense_Mutation p.I134T 0.73 tolerated(0.52) benign(0.009) TCGA-GV-A3QI-01 20 45130608 45130608 C A ZNF334 Missense_Mutation p.G457V 0.16 deleterious(0) possibly_damaging(0.891) TCGA-GV-A3QI-01 20 51873094 51873094 G A TSHZ2 Missense_Mutation p.E1033K 0.66 tolerated(1) possibly_damaging(0.814) TCGA-GV-A3QI-01 20 52788149 52788149 C A CYP24A1 Silent p.G170G 0.14 TCGA-GV-A3QI-01 20 61341220 61341220 G A NTSR1 Missense_Mutation p.G221S 0.67 tolerated(1) benign(0.028) TCGA-GV-A3QI-01 21 10951423 10951423 A T TPTE Missense_Mutation p.F97I 0.06 tolerated(0.06) possibly_damaging(0.845) TCGA-GV-A3QI-01 21 28296360 28296360 C T ADAMTS5 3'UTR 1.00 TCGA-GV-A3QI-01 21 31973522 31973522 G A KRTAP22-1 Missense_Mutation p.G28D 0.92 unknown(0) TCGA-GV-A3QI-01 21 32185477 32185477 T G KRTAP8-1 Missense_Mutation p.Y21S 0.95 tolerated_low_confidence(0.08) benign(0.083) TCGA-GV-A3QI-01 21 32617923 32617923 T A TIAM1 Missense_Mutation p.S489C 0.88 deleterious(0.02) benign(0.214) TCGA-GV-A3QI-01 21 32617924 32617924 G A TIAM1 Silent p.N488N 0.88 TCGA-GV-A3QI-01 21 41385013 41385013 C T DSCAM Missense_Mutation p.R1996Q 0.91 deleterious_low_confidence(0) benign(0.001) TCGA-GV-A3QI-01 21 41416166 41416166 G T DSCAM Missense_Mutation p.T1741K 0.95 deleterious(0.01) benign(0.028) TCGA-GV-A3QI-01 21 44108091 44108091 G CT PDE9A Frame_Shift_Ins p.A69Lfs*35 0.45 TCGA-GV-A3QI-01 21 45994247 45994247 C T KRTAP10-4 Silent p.C204C 0.80 TCGA-GV-A3QI-01 22 18358253 18358253 G C MICAL3 Intron 0.25 TCGA-GV-A3QI-01 22 18846086 18846086 C T BCRP7 RNA 0.10 TCGA-GV-A3QI-01 22 20937496 20937496 C A MED15 Missense_Mutation p.P545H 0.45 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 22 21345960 21345960 C G LZTR1 Missense_Mutation p.P279A 0.24 tolerated(0.17) benign(0.163) TCGA-GV-A3QI-01 22 22277628 22277628 C A PPM1F Missense_Mutation p.G401V 0.51 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 22 27021570 27021570 G A CRYBA4 Missense_Mutation p.R95Q 0.48 tolerated(0.07) probably_damaging(0.996) TCGA-GV-A3QI-01 22 29763219 29763219 T G AP1B1 Missense_Mutation p.K5T 0.20 deleterious(0) possibly_damaging(0.517) TCGA-GV-A3QI-01 22 38120039 38120039 C G TRIOBP Silent p.P492P 0.43 TCGA-GV-A3QI-01 22 38776986 38776986 T G RP3-449O17.1 RNA 0.28 TCGA-GV-A3QI-01 22 41257777 41257777 G A DNAJB7 Silent p.N74N 0.99 TCGA-GV-A3QI-01 22 44031097 44031097 C T EFCAB6 Splice_Site p.X662_splice 0.46 TCGA-GV-A3QI-01 22 44965238 44965238 G A LINC00207 RNA 0.33 TCGA-GV-A3QI-01 22 45972913 45972913 A G FBLN1 Missense_Mutation p.I633V 0.26 tolerated(0.51) benign(0.141) TCGA-GV-A3QI-01 2 111423892 111423892 T G BUB1 Missense_Mutation p.Q302P 0.46 deleterious(0.04) possibly_damaging(0.828) TCGA-GV-A3QI-01 2 11333916 11333916 T C ROCK2 Missense_Mutation p.R1226G 0.35 deleterious(0) probably_damaging(0.955) TCGA-GV-A3QI-01 2 113420544 113420544 C G SLC20A1 Missense_Mutation p.S661C 0.56 deleterious(0) possibly_damaging(0.792) TCGA-GV-A3QI-01 2 120639722 120639722 C G PTPN4 Missense_Mutation p.Q155E 0.56 deleterious(0.01) benign(0.033) TCGA-GV-A3QI-01 2 121747231 121747231 T C GLI2 Silent p.Y1247Y 0.59 TCGA-GV-A3QI-01 2 130872849 130872849 G A POTEF Silent p.L192L 0.20 TCGA-GV-A3QI-01 2 152330584 152330584 C G RIF1 Nonsense_Mutation p.S2401* 0.52 TCGA-GV-A3QI-01 2 160252303 160252303 T C BAZ2B Missense_Mutation p.M1018V 0.26 benign(0) TCGA-GV-A3QI-01 2 163051256 163051256 G A FAP Missense_Mutation p.P469S 0.22 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 2 163213345 163213345 C T GCA Silent p.F128F 0.66 TCGA-GV-A3QI-01 2 166245291 166245291 G C SCN2A Missense_Mutation p.A1659P 0.11 deleterious(0) probably_damaging(0.972) TCGA-GV-A3QI-01 2 166246148 166246148 C A SCN2A Silent p.P1944P 0.74 TCGA-GV-A3QI-01 2 166859238 166859238 G T SCN1A Missense_Mutation p.A1343E 0.65 deleterious(0.03) probably_damaging(1) TCGA-GV-A3QI-01 2 170060728 170060728 T A LRP2 Missense_Mutation p.N2590I 0.62 benign(0.008) TCGA-GV-A3QI-01 2 178684974 178684974 T C PDE11A Missense_Mutation p.I517V 0.63 deleterious(0) possibly_damaging(0.891) TCGA-GV-A3QI-01 2 179396043 179396043 G A TTN Missense_Mutation p.A35100V 0.77 TCGA-GV-A3QI-01 2 179428076 179428076 T A TTN Missense_Mutation p.I27595F 0.30 TCGA-GV-A3QI-01 2 179431369 179431369 A G TTN Missense_Mutation p.V26497A 0.24 TCGA-GV-A3QI-01 2 179440159 179440159 T C TTN Missense_Mutation p.Y23567C 0.33 TCGA-GV-A3QI-01 2 179621183 179621183 C T TTN Missense_Mutation p.G3674S 0.75 TCGA-GV-A3QI-01 2 197183282 197183282 T A HECW2 Missense_Mutation p.T778S 0.52 tolerated_low_confidence(0.51) benign(0.002) TCGA-GV-A3QI-01 2 198367982 198367982 G A HSPE1 Silent p.%3D 0.81 TCGA-GV-A3QI-01 2 207459510 207459510 G C ADAM23 Missense_Mutation p.D710H 0.61 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 2 219324581 219324581 C G USP37 Missense_Mutation p.G859R 0.95 deleterious(0.03) probably_damaging(0.999) TCGA-GV-A3QI-01 2 220414622 220414622 C T TMEM198 3'UTR 0.94 TCGA-GV-A3QI-01 2 223086063 223086063 C T PAX3 Missense_Mutation p.G279E 0.94 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 2 228758558 228758558 C T DAW1 Missense_Mutation p.A122V 0.78 tolerated(0.22) benign(0.048) TCGA-GV-A3QI-01 2 231927368 231927368 G A PSMD1 Missense_Mutation p.E95K 0.86 deleterious(0) possibly_damaging(0.688) TCGA-GV-A3QI-01 2 24535214 24535214 C G ITSN2 Missense_Mutation p.K73N 0.21 tolerated(0.06) probably_damaging(0.993) TCGA-GV-A3QI-01 2 26587758 26587758 T A EPT1 Missense_Mutation p.V62E 0.61 deleterious(0) probably_damaging(0.919) TCGA-GV-A3QI-01 2 27448663 27448663 A G CAD Missense_Mutation p.R571G 0.69 deleterious(0.04) benign(0) TCGA-GV-A3QI-01 2 27480167 27480167 C T SLC30A3 Missense_Mutation p.G211E 0.23 tolerated(0.37) benign(0.068) TCGA-GV-A3QI-01 2 27821096 27821096 G A ZNF512 Silent p.K84K 0.19 TCGA-GV-A3QI-01 2 33589420 33589420 A G LTBP1 Missense_Mutation p.N1513D 0.62 tolerated(0.56) benign(0.039) TCGA-GV-A3QI-01 2 42552634 42552634 G C EML4 Missense_Mutation p.D728H 0.21 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 2 55444968 55444968 C G CLHC1 Missense_Mutation p.R115T 0.22 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QI-01 2 61416073 61416073 C T USP34 Silent p.E3335E 0.56 TCGA-GV-A3QI-01 2 71062835 71062836 TC CTT CD207 Frame_Shift_Ins p.R24Qfs*71 0.42 TCGA-GV-A3QI-01 2 71191936 71191936 C A ATP6V1B1 Missense_Mutation p.S440Y 0.52 deleterious(0.01) possibly_damaging(0.701) TCGA-GV-A3QI-01 2 77745525 77745525 A T LRRTM4 Silent p.P490P 0.65 TCGA-GV-A3QI-01 2 77746266 77746266 G A LRRTM4 Silent p.S243S 0.33 TCGA-GV-A3QI-01 2 88405960 88405960 C A SMYD1 Silent p.A366A 0.39 TCGA-GV-A3QI-01 2 98996644 98996644 G A CNGA3 Silent p.S74S 0.41 TCGA-GV-A3QI-01 3 112059796 112059796 G A CD200 Nonsense_Mutation p.W45* 0.22 TCGA-GV-A3QI-01 3 113188079 113188079 G C SPICE1 Silent p.L206L 0.72 TCGA-GV-A3QI-01 3 113376934 113376934 G A KIAA2018 Nonsense_Mutation p.Q1199* 0.52 TCGA-GV-A3QI-01 3 114070467 114070467 T C ZBTB20 Missense_Mutation p.K153R 0.23 tolerated(0.13) probably_damaging(0.973) TCGA-GV-A3QI-01 3 119205718 119205718 G T POGLUT1 Missense_Mutation p.R226L 0.40 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 3 121410945 121410945 C T GOLGB1 Silent p.L2422L 0.48 TCGA-GV-A3QI-01 3 126142417 126142417 C T CCDC37 Nonsense_Mutation p.Q406* 0.45 TCGA-GV-A3QI-01 3 126154466 126154467 GC - CCDC37 Frame_Shift_Del p.A567Pfs*3 0.38 TCGA-GV-A3QI-01 3 127391916 127391916 C T ABTB1 Silent p.G16G 0.29 TCGA-GV-A3QI-01 3 130686221 130686221 G T ATP2C1 Missense_Mutation p.M456I 0.44 tolerated(0.37) benign(0) TCGA-GV-A3QI-01 3 131100709 131100709 C T NUDT16 Missense_Mutation p.H21Y 0.56 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-GV-A3QI-01 3 134851706 134851706 C T EPHB1 Missense_Mutation p.S371F 0.51 tolerated(0.05) possibly_damaging(0.601) TCGA-GV-A3QI-01 3 136085925 136085925 C G STAG1 Splice_Site p.X849_splice 0.16 TCGA-GV-A3QI-01 3 136196190 136196190 T A STAG1 Missense_Mutation p.S323C 0.64 tolerated(0.09) probably_damaging(0.971) TCGA-GV-A3QI-01 3 138724664 138724664 G A PRR23A Silent p.I149I 0.30 TCGA-GV-A3QI-01 3 141497288 141497288 G A GRK7 Silent p.L54L 0.96 TCGA-GV-A3QI-01 3 142681984 142681984 A T PAQR9 Silent p.R65R 0.78 TCGA-GV-A3QI-01 3 167196776 167196776 C G WDR49 Missense_Mutation p.A662P 0.15 deleterious(0.01) possibly_damaging(0.878) TCGA-GV-A3QI-01 3 171427487 171427487 T C PLD1 Silent p.L308L 0.47 TCGA-GV-A3QI-01 3 173998359 173998359 C A NLGN1 Missense_Mutation p.Q580K 0.44 tolerated(0.21) possibly_damaging(0.606) TCGA-GV-A3QI-01 3 186504538 186504538 G A EIF4A2 Intron 0.49 TCGA-GV-A3QI-01 3 46751086 46751086 A C TMIE Missense_Mutation p.K127Q 0.39 tolerated(0.41) benign(0.003) TCGA-GV-A3QI-01 3 48699092 48699092 G A CELSR3 Missense_Mutation p.P326S 0.22 tolerated(0.23) benign(0.012) TCGA-GV-A3QI-01 3 49689154 49689154 C T BSN Missense_Mutation p.S722F 0.66 unknown(0) TCGA-GV-A3QI-01 3 51746972 51746972 G A GRM2 Missense_Mutation p.E312K 0.62 deleterious(0.02) possibly_damaging(0.507) TCGA-GV-A3QI-01 3 52724605 52724605 C G GNL3 Intron 0.29 TCGA-GV-A3QI-01 3 57496605 57496605 T C DNAH12 Silent p.L127L 0.67 TCGA-GV-A3QI-01 3 69113226 69113226 G A UBA3 Silent p.F155F 0.47 TCGA-GV-A3QI-01 3 77607281 77607281 T C ROBO2 Missense_Mutation p.L489P 0.71 deleterious(0) probably_damaging(0.928) TCGA-GV-A3QI-01 3 77626765 77626765 G T ROBO2 Missense_Mutation p.K792N 0.61 deleterious(0) possibly_damaging(0.728) TCGA-GV-A3QI-01 3 97311498 97311498 T A EPHA6 Missense_Mutation p.F810Y 0.32 tolerated_low_confidence(0.2) benign(0.271) TCGA-GV-A3QI-01 4 100479265 100479265 C T TRMT10A Missense_Mutation p.V97I 0.56 tolerated(0.1) benign(0.107) TCGA-GV-A3QI-01 4 111441503 111441503 C G ENPEP Missense_Mutation p.Q570E 0.53 tolerated(1) benign(0.001) TCGA-GV-A3QI-01 4 114179491 114179491 T C ANK2 Missense_Mutation p.V437A 0.22 possibly_damaging(0.477) TCGA-GV-A3QI-01 4 119951885 119951885 C T SYNPO2 Missense_Mutation p.P652L 0.53 deleterious(0) possibly_damaging(0.773) TCGA-GV-A3QI-01 4 120527872 120527872 C A PDE5A Missense_Mutation p.A245S 0.44 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 4 125593360 125593360 G A ANKRD50 Missense_Mutation p.L358F 0.33 deleterious(0) probably_damaging(0.994) TCGA-GV-A3QI-01 4 143007320 143007320 C T INPP4B Missense_Mutation p.E822K 0.58 deleterious(0.01) probably_damaging(0.982) TCGA-GV-A3QI-01 4 156634314 156634314 C T GUCY1A3 Missense_Mutation p.S384L 0.34 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QI-01 4 159174635 159174635 A G TMEM144 Missense_Mutation p.I332V 0.32 tolerated(0.9) benign(0.008) TCGA-GV-A3QI-01 4 16900017 16900017 C T LDB2 Missense_Mutation p.R31Q 0.23 deleterious(0) probably_damaging(0.994) TCGA-GV-A3QI-01 4 175898028 175898028 C G ADAM29 Nonsense_Mutation p.S451* 0.35 TCGA-GV-A3QI-01 4 177089822 177089822 G A WDR17 Missense_Mutation p.R1036K 0.16 tolerated(1) probably_damaging(0.977) TCGA-GV-A3QI-01 4 184367945 184367945 C T CDKN2AIP Silent p.L370L 0.36 TCGA-GV-A3QI-01 4 186544731 186544731 C G SORBS2 Missense_Mutation p.E714Q 0.54 deleterious(0) possibly_damaging(0.828) TCGA-GV-A3QI-01 4 187541941 187541948 AGTCTTGT - FAT1 Frame_Shift_Del p.Y1931Wfs*20 0.31 TCGA-GV-A3QI-01 4 3424264 3424264 G A RGS12 Silent p.A1000A 0.23 TCGA-GV-A3QI-01 4 3449273 3449273 G A HGFAC Silent p.T470T 0.63 TCGA-GV-A3QI-01 4 3952916 3952916 G A FAM86EP Intron 0.07 TCGA-GV-A3QI-01 4 48592691 48592691 C G FRYL Missense_Mutation p.E498Q 0.38 deleterious(0.05) probably_damaging(0.998) TCGA-GV-A3QI-01 4 5468533 5468533 G A STK32B Missense_Mutation p.R338K 0.60 tolerated(0.7) benign(0) TCGA-GV-A3QI-01 4 55144549 55144549 G C PDGFRA Missense_Mutation p.E675Q 0.38 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 4 62800644 62800644 G T LPHN3 Silent p.A665A 0.17 TCGA-GV-A3QI-01 4 71201390 71201390 A G CABS1 Missense_Mutation p.I212V 0.42 tolerated(0.28) possibly_damaging(0.622) TCGA-GV-A3QI-01 4 82355883 82355883 C T RASGEF1B Silent p.V370V 0.62 TCGA-GV-A3QI-01 4 8288388 8288388 A C HTRA3 Missense_Mutation p.N196H 0.04 tolerated(0.3) possibly_damaging(0.516) TCGA-GV-A3QI-01 4 84382165 84382165 T A MRPS18C Missense_Mutation p.I111N 0.22 deleterious(0) probably_damaging(0.99) TCGA-GV-A3QI-01 4 860930 860930 C A GAK Missense_Mutation p.V896L 0.72 tolerated(0.73) benign(0.001) TCGA-GV-A3QI-01 4 87080492 87080492 C T MAPK10 Silent p.Q65Q 0.17 TCGA-GV-A3QI-01 5 118440935 118440935 A G DMXL1 Missense_Mutation p.I116V 0.54 deleterious(0) benign(0.038) TCGA-GV-A3QI-01 5 127674745 127674745 C A FBN2 Nonsense_Mutation p.E1118* 0.50 TCGA-GV-A3QI-01 5 132094204 132094204 C A SEPT8 Intron 0.60 TCGA-GV-A3QI-01 5 137347541 137347541 C G FAM13B Missense_Mutation p.R155T 0.49 deleterious(0.01) benign(0.43) TCGA-GV-A3QI-01 5 13753590 13753590 G A DNAH5 Silent p.L3542L 0.33 TCGA-GV-A3QI-01 5 140221688 140221688 T A PCDHA8 Missense_Mutation p.V261D 0.39 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-GV-A3QI-01 5 140255207 140255207 G A PCDHA12 Silent p.Q50Q 0.32 TCGA-GV-A3QI-01 5 140563833 140563833 A G PCDHB16 Missense_Mutation p.N567D 0.18 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-GV-A3QI-01 5 140573673 140573673 C T PCDHB10 Silent p.L516L 0.26 TCGA-GV-A3QI-01 5 140774311 140774311 T C PCDHGA8 Missense_Mutation p.V644A 0.42 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-GV-A3QI-01 5 140792740 140792740 A G PCDHGB6 Intron 0.50 TCGA-GV-A3QI-01 5 140800805 140800805 G A PCDHGA11 Missense_Mutation p.R4Q 0.28 tolerated_low_confidence(0.32) benign(0.001) TCGA-GV-A3QI-01 5 141035204 141035204 G A ARAP3 Missense_Mutation p.S1365F 0.15 deleterious(0) probably_damaging(0.99) TCGA-GV-A3QI-01 5 141243228 141243228 T C PCDH1 Missense_Mutation p.K890E 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-GV-A3QI-01 5 149585112 149585112 G A SLC6A7 Missense_Mutation p.G543S 0.55 tolerated(0.32) probably_damaging(0.998) TCGA-GV-A3QI-01 5 150029566 150029566 A C SYNPO Missense_Mutation p.I821L 0.47 tolerated(0.23) benign(0.009) TCGA-GV-A3QI-01 5 156907940 156907940 A T ADAM19 3'UTR 0.46 TCGA-GV-A3QI-01 5 158750268 158750268 G T IL12B Missense_Mutation p.P53H 0.43 deleterious(0.04) benign(0.386) TCGA-GV-A3QI-01 5 176734587 176734587 C G MXD3 3'UTR 0.32 TCGA-GV-A3QI-01 5 178139071 178139071 T A ZNF354A Missense_Mutation p.E603V 0.55 deleterious(0) possibly_damaging(0.462) TCGA-GV-A3QI-01 5 179675979 179675979 C T MAPK9 Missense_Mutation p.E204K 0.41 tolerated(0.07) possibly_damaging(0.537) TCGA-GV-A3QI-01 5 31431748 31431748 C T DROSHA Missense_Mutation p.G1027E 0.37 deleterious(0) probably_damaging(0.997) TCGA-GV-A3QI-01 5 39288867 39288867 C G C9 Missense_Mutation p.E535Q 0.37 tolerated(0.23) benign(0.03) TCGA-GV-A3QI-01 5 43547879 43547879 A T PAIP1 Missense_Mutation p.V191D 0.46 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 5 45303881 45303881 C A HCN1 Missense_Mutation p.D480Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 5 492103 492103 C T SLC9A3 Missense_Mutation p.V99I 0.57 tolerated(0.28) possibly_damaging(0.846) TCGA-GV-A3QI-01 5 90101230 90101230 G C GPR98 Missense_Mutation p.E4931Q 0.94 benign(0.074) TCGA-GV-A3QI-01 5 90106817 90106817 G A GPR98 Missense_Mutation p.R5247K 1.00 benign(0.364) TCGA-GV-A3QI-01 6 123892184 123892185 TC - TRDN Frame_Shift_Del p.D39Hfs*30 0.34 TCGA-GV-A3QI-01 6 125233454 125233454 T A RP11-510H23.1 RNA 0.33 TCGA-GV-A3QI-01 6 132029804 132029804 A T CTAGE9 3'UTR 0.23 TCGA-GV-A3QI-01 6 13327121 13327121 C G TBC1D7 Missense_Mutation p.D4H 0.16 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 6 133769307 133769307 T A EYA4 Silent p.S89S 0.54 TCGA-GV-A3QI-01 6 134312178 134312178 C G SLC2A12 3'UTR 0.46 TCGA-GV-A3QI-01 6 138199825 138199825 C A TNFAIP3 Missense_Mutation p.Q415K 0.16 tolerated(0.96) benign(0.001) TCGA-GV-A3QI-01 6 154727695 154727695 G A CNKSR3 Silent p.P487P 0.55 TCGA-GV-A3QI-01 6 157222596 157222596 G T ARID1B Silent p.P621P 0.33 TCGA-GV-A3QI-01 6 159404769 159404769 C T RSPH3 Silent p.L281L 0.39 TCGA-GV-A3QI-01 6 161022029 161022029 C A LPA Missense_Mutation p.R1016L 0.51 tolerated(0.07) possibly_damaging(0.611) TCGA-GV-A3QI-01 6 166571949 166571949 G A T Missense_Mutation p.H388Y 0.55 tolerated(0.71) benign(0.005) TCGA-GV-A3QI-01 6 18222170 18222170 A G KDM1B Missense_Mutation p.T574A 0.05 tolerated(0.13) unknown(0) TCGA-GV-A3QI-01 6 30043128 30043128 C T RNF39 Missense_Mutation p.V147M 1.00 tolerated(0.26) possibly_damaging(0.486) TCGA-GV-A3QI-01 6 32940670 32940670 G C BRD2 5'UTR 0.17 TCGA-GV-A3QI-01 6 33141522 33141522 C T COL11A2 Missense_Mutation p.G776R 1.00 probably_damaging(0.979) TCGA-GV-A3QI-01 6 34003490 34003490 C A GRM4 Silent p.L799L 0.95 TCGA-GV-A3QI-01 6 35586902 35586902 G C FKBP5 Nonsense_Mutation p.S160* 0.91 TCGA-GV-A3QI-01 6 36937845 36937845 C G MTCH1 Missense_Mutation p.W339C 0.93 deleterious(0) probably_damaging(0.98) TCGA-GV-A3QI-01 6 41010863 41010863 T C TSPO2 Silent p.L47L 0.34 TCGA-GV-A3QI-01 6 49448703 49448703 A T CENPQ Missense_Mutation p.K129N 0.34 tolerated(0.11) benign(0.422) TCGA-GV-A3QI-01 6 52141909 52141909 G A MCM3 Missense_Mutation p.S419F 0.34 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QI-01 6 56324926 56324926 C T DST Intron 0.61 TCGA-GV-A3QI-01 6 72011571 72011571 G A OGFRL1 Missense_Mutation p.R392K 0.37 tolerated(0.94) benign(0.003) TCGA-GV-A3QI-01 6 80816567 80816567 C T BCKDHB Missense_Mutation p.H53Y 0.18 deleterious(0.01) benign(0.027) TCGA-GV-A3QI-01 6 83835289 83835289 G A DOPEY1 Missense_Mutation p.S519N 0.36 tolerated(0.32) benign(0.334) TCGA-GV-A3QI-01 6 88775899 88775899 G T SPACA1 Splice_Site p.X244_splice 0.23 TCGA-GV-A3QI-01 6 88854586 88854586 C A CNR1 Silent p.L136L 0.70 TCGA-GV-A3QI-01 6 97000455 97000455 C A UFL1 Missense_Mutation p.Q695K 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3QI-01 7 100280767 100280767 G C GIGYF1 Silent p.L760L 0.90 TCGA-GV-A3QI-01 7 100609620 100609620 G A MUC3A Silent p.L784L 0.54 TCGA-GV-A3QI-01 7 100684490 100684490 A G MUC17 Missense_Mutation p.T3265A 0.77 benign(0.238) TCGA-GV-A3QI-01 7 102743924 102743924 C G NAPEPLD Missense_Mutation p.L378F 0.68 deleterious(0.01) possibly_damaging(0.897) TCGA-GV-A3QI-01 7 104731675 104731675 A G KMT2E Missense_Mutation p.I546V 0.21 tolerated(0.16) benign(0.031) TCGA-GV-A3QI-01 7 122377026 122377026 C T CADPS2 Missense_Mutation p.V146I 0.38 tolerated(0.31) benign(0.031) TCGA-GV-A3QI-01 7 126698160 126698160 A G GRM8 Intron 0.21 TCGA-GV-A3QI-01 7 128496641 128496641 G A FLNC Missense_Mutation p.D2441N 0.17 tolerated(0.27) probably_damaging(0.936) TCGA-GV-A3QI-01 7 129040163 129040163 G C AHCYL2 Missense_Mutation p.E286Q 0.28 deleterious(0.03) possibly_damaging(0.865) TCGA-GV-A3QI-01 7 133812382 133812382 G A LRGUK Missense_Mutation p.E88K 0.36 deleterious_low_confidence(0.03) benign(0.356) TCGA-GV-A3QI-01 7 14026281 14026281 C G ETV1 Missense_Mutation p.E55Q 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-GV-A3QI-01 7 150033950 150033950 C T LRRC61 5'UTR 0.55 TCGA-GV-A3QI-01 7 150939810 150939810 C T SMARCD3 Missense_Mutation p.M151I 0.29 tolerated(0.86) benign(0.002) TCGA-GV-A3QI-01 7 154598703 154598703 G T DPP6 Splice_Site p.X516_splice 0.37 TCGA-GV-A3QI-01 7 158851235 158851235 G T VIPR2 Missense_Mutation p.T131K 0.32 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 7 20785059 20785059 G A ABCB5 Missense_Mutation p.E1143K 0.40 tolerated(0.29) benign(0.012) TCGA-GV-A3QI-01 7 21826250 21826250 C T DNAH11 Silent p.L3209L 0.32 TCGA-GV-A3QI-01 7 24756952 24756952 G A DFNA5 Silent p.N206N 0.64 TCGA-GV-A3QI-01 7 28763907 28763907 T A CREB5 Nonsense_Mutation p.C220* 0.28 TCGA-GV-A3QI-01 7 30831104 30831104 C G FAM188B Silent p.L329L 0.22 TCGA-GV-A3QI-01 7 31014105 31014105 G A GHRHR Splice_Site p.X271_splice 0.25 TCGA-GV-A3QI-01 7 39247149 39247149 C A POU6F2 Silent p.T147T 0.39 TCGA-GV-A3QI-01 7 47408849 47408849 T A TNS3 Missense_Mutation p.N465I 0.46 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QI-01 7 48081010 48081010 C T C7orf57 Silent p.S45S 0.34 TCGA-GV-A3QI-01 7 48316091 48316091 A G ABCA13 Silent p.L2276L 0.59 TCGA-GV-A3QI-01 7 50468169 50468169 G T IKZF1 Silent p.R426R 0.67 TCGA-GV-A3QI-01 7 53103682 53103682 C G POM121L12 Silent p.T106T 0.31 TCGA-GV-A3QI-01 7 56006860 56006860 G A ZNF713 Missense_Mutation p.G152R 0.54 tolerated(1) benign(0.154) TCGA-GV-A3QI-01 7 63721301 63721301 C T ZNF679 Missense_Mutation p.H86Y 0.12 tolerated(0.12) benign(0.003) TCGA-GV-A3QI-01 7 6502667 6502667 G C KDELR2 3'UTR 0.86 TCGA-GV-A3QI-01 7 75890733 75890733 G A SRRM3 Splice_Site p.X213_splice 0.95 TCGA-GV-A3QI-01 7 76950709 76950709 A G GSAP Silent p.I645I 0.06 TCGA-GV-A3QI-01 7 8196838 8196838 G C ICA1 Missense_Mutation p.L238V 0.18 deleterious(0) probably_damaging(0.98) TCGA-GV-A3QI-01 7 91503775 91503775 A T MTERF Silent p.L111L 0.71 TCGA-GV-A3QI-01 7 98256632 98256632 C T NPTX2 Silent p.G348G 0.80 TCGA-GV-A3QI-01 7 99015258 99015258 A T PTCD1 3'Flank 0.21 TCGA-GV-A3QI-01 7 99097527 99097527 G A ZNF394 Nonsense_Mutation p.R64* 0.12 TCGA-GV-A3QI-01 8 110410761 110410761 C G PKHD1L1 Silent p.L332L 0.26 TCGA-GV-A3QI-01 8 113299303 113299303 T C CSMD3 Silent p.P3107P 0.04 TCGA-GV-A3QI-01 8 133811032 133811032 C T PHF20L1 Nonsense_Mutation p.Q119* 0.38 TCGA-GV-A3QI-01 8 140715046 140715046 G A KCNK9 Silent p.L64L 0.43 TCGA-GV-A3QI-01 8 141524510 141524510 G T CHRAC1 Missense_Mutation p.G64C 0.66 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 8 142441037 142441037 G T PTP4A3 Nonsense_Mutation p.G139* 0.40 TCGA-GV-A3QI-01 8 145727093 145727093 C T PPP1R16A Missense_Mutation p.A465V 0.43 deleterious(0.01) benign(0.124) TCGA-GV-A3QI-01 8 17396379 17396379 C G SLC7A2 Missense_Mutation p.R16G 0.15 benign(0) TCGA-GV-A3QI-01 8 22147366 22147366 G T PIWIL2 Missense_Mutation p.M331I 0.36 deleterious(0) possibly_damaging(0.87) TCGA-GV-A3QI-01 8 27277583 27277583 G A PTK2B Missense_Mutation p.E126K 0.52 deleterious(0) probably_damaging(0.985) TCGA-GV-A3QI-01 8 30210777 30210777 C T TUBBP1 RNA 0.34 TCGA-GV-A3QI-01 8 41525865 41525865 G T ANK1 Missense_Mutation p.Q1813K 0.56 tolerated_low_confidence(0.9) benign(0.001) TCGA-GV-A3QI-01 8 48694764 48694764 A G PRKDC Silent p.L3815L 0.12 TCGA-GV-A3QI-01 8 55372581 55372581 C T SOX17 3'UTR 0.48 TCGA-GV-A3QI-01 8 57358268 57358268 G T PENK Intron 0.75 TCGA-GV-A3QI-01 8 70744123 70744123 G T SLCO5A1 Silent p.V262V 0.70 TCGA-GV-A3QI-01 8 72981302 72981302 G A TRPA1 Missense_Mutation p.P134S 0.35 deleterious(0.01) possibly_damaging(0.728) TCGA-GV-A3QI-01 8 77765656 77765656 G T ZFHX4 Missense_Mutation p.G2167C 0.53 probably_damaging(0.966) TCGA-GV-A3QI-01 8 93004034 93004034 C A RUNX1T1 Missense_Mutation p.R286L 0.49 deleterious(0.04) probably_damaging(0.983) TCGA-GV-A3QI-01 8 99140614 99140614 G T POP1 Missense_Mutation p.R111L 0.33 deleterious(0) probably_damaging(1) TCGA-GV-A3QI-01 9 100433475 100433475 G A NCBP1 Silent p.Q789Q 0.28 TCGA-GV-A3QI-01 9 115931551 115931551 T A FKBP15 Silent p.T1146T 0.27 TCGA-GV-A3QI-01 9 127623766 127623766 C T RPL35 Silent p.L24L 0.81 TCGA-GV-A3QI-01 9 13107098 13107098 C T MPDZ Missense_Mutation p.E1998K 0.18 deleterious(0.02) probably_damaging(1) TCGA-GV-A3QI-01 9 135458598 135458598 A G BARHL1 Silent p.R138R 0.89 TCGA-GV-A3QI-01 9 137687131 137687131 C G COL5A1 Silent p.P923P 0.16 TCGA-GV-A3QI-01 9 138675901 138675901 T A KCNT1 Missense_Mutation p.F958Y 0.73 tolerated(0.51) benign(0.14) TCGA-GV-A3QI-01 9 14720287 14720287 G T CER1 Missense_Mutation p.S202Y 0.20 tolerated(1) benign(0.286) TCGA-GV-A3QI-01 9 32544067 32544067 C T TOPORS Silent p.V152V 0.21 TCGA-GV-A3QI-01 9 34514538 34514538 C G DNAI1 Missense_Mutation p.I572M 0.62 tolerated(0.16) benign(0.028) TCGA-GV-A3QI-01 9 35090170 35090170 C G PIGO Missense_Mutation p.E988Q 0.15 deleterious(0.04) benign(0.197) TCGA-GV-A3QI-01 9 35792645 35792645 A G NPR2 Silent p.A80A 0.12 TCGA-GV-A3QI-01 9 37745551 37745551 A T FRMPD1 Silent p.P1174P 0.17 TCGA-GV-A3QI-01 9 43627203 43627203 G T SPATA31A6 Missense_Mutation p.A495D 0.39 tolerated(0.09) benign(0.006) TCGA-GV-A3QI-01 9 72333393 72333393 C A PTAR1 Silent p.R358R 0.46 TCGA-GV-A3QI-01 9 80043925 80043925 C T GNA14 Silent p.S207S 0.59 TCGA-GV-A3QI-01 9 84230944 84230944 C T TLE1 Missense_Mutation p.A291T 0.69 tolerated(0.17) benign(0.348) TCGA-GV-A3QI-01 9 86518142 86518142 G A KIF27 Silent p.L431L 0.32 TCGA-GV-A3QI-01 9 90266558 90266558 C T DAPK1 Silent p.L581L 0.05 TCGA-GV-A3QI-01 9 96082726 96082726 G C WNK2 3'Flank 0.75 TCGA-GV-A3QI-01 X 101153125 101153125 A T ZMAT1 Silent p.G99G 1.00 TCGA-GV-A3QI-01 X 10155598 10155598 G T CLCN4 Missense_Mutation p.S63I 0.96 tolerated(0.3) benign(0.089) TCGA-GV-A3QI-01 X 114871237 114871237 C G PLS3 Missense_Mutation p.H280D 0.31 deleterious(0) probably_damaging(0.933) TCGA-GV-A3QI-01 X 118708895 118708895 G A UBE2A Missense_Mutation p.G26R 0.96 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QI-01 X 123518470 123518496 TTCATCACTGTAGTAGTTATGACCTGA - TENM1 In_Frame_Del p.N2095_M2103del 0.12 TCGA-GV-A3QI-01 X 129801714 129801714 C A ENOX2 Missense_Mutation p.D262Y 0.31 deleterious(0.01) benign(0.377) TCGA-GV-A3QI-01 X 130409559 130409559 G A IGSF1 Missense_Mutation p.T1031I 0.98 tolerated(0.23) benign(0.024) TCGA-GV-A3QI-01 X 137821489 137821489 A G FGF13 Intron 1.00 TCGA-GV-A3QI-01 X 152807362 152807362 G A ATP2B3 Silent p.G214G 0.89 TCGA-GV-A3QI-01 X 1719725 1719725 G T AKAP17A Silent p.L442L 0.42 TCGA-GV-A3QI-01 X 17739625 17739625 A G NHS Missense_Mutation p.H306R 0.98 tolerated(0.27) probably_damaging(0.991) TCGA-GV-A3QI-01 X 21675970 21675970 C T KLHL34 5'UTR 1.00 TCGA-GV-A3QI-01 X 23411277 23411277 T A PTCHD1 Missense_Mutation p.Y548N 0.23 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QI-01 X 2407722 2407722 C T ZBED1 Missense_Mutation p.V347M 0.60 deleterious(0.02) benign(0.242) TCGA-GV-A3QI-01 X 30237164 30237164 C G MAGEB2 Missense_Mutation p.A156G 1.00 deleterious(0) probably_damaging(0.986) TCGA-GV-A3QI-01 X 34648361 34648361 T A TMEM47 3'UTR 0.90 TCGA-GV-A3QI-01 X 41437603 41437603 T C CASK Missense_Mutation p.D498G 1.00 deleterious(0.01) possibly_damaging(0.596) TCGA-GV-A3QI-01 X 55777615 55777615 G T RRAGB Nonsense_Mutation p.E228* 1.00 TCGA-GV-A3QI-01 X 67431998 67431998 T C OPHN1 Silent p.T218T 0.94 TCGA-GV-A3QI-01 Y 4967993 4967993 G T PCDH11Y Missense_Mutation p.D792Y 0.76 deleterious(0.02) possibly_damaging(0.847) TCGA-GV-A3QK-01 10 27688159 27688159 G A PTCHD3 Silent p.V456V 0.39 TCGA-GV-A3QK-01 10 75011600 75011600 G A MRPS16 Silent p.L65L 0.30 TCGA-GV-A3QK-01 10 7774363 7774363 G A ITIH2 Silent p.S570S 0.23 TCGA-GV-A3QK-01 10 90427424 90427424 G A LIPF Silent p.K78K 0.31 TCGA-GV-A3QK-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.44 TCGA-GV-A3QK-01 11 102586120 102586120 A G MMP8 Silent p.F317F 0.50 TCGA-GV-A3QK-01 11 1267503 1267503 G A MUC5B Silent p.T3131T 0.30 TCGA-GV-A3QK-01 11 16838371 16838390 CCTTGGAGAATCCCCCAGCG - PLEKHA7 Frame_Shift_Del p.S608* 0.23 TCGA-GV-A3QK-01 11 27398722 27398722 G T LGR4 Nonsense_Mutation p.C364* 0.37 TCGA-GV-A3QK-01 11 57505121 57505121 G A TMX2 Missense_Mutation p.M77I 0.27 deleterious(0.01) benign(0.066) TCGA-GV-A3QK-01 11 60892591 60892591 C A CD5 Missense_Mutation p.P456H 0.37 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QK-01 11 73610250 73610250 G A PAAF1 Silent p.G114G 0.15 TCGA-GV-A3QK-01 11 75316769 75316769 T G MAP6 Intron 0.29 TCGA-GV-A3QK-01 11 76944073 76944073 G A GDPD4 Silent p.F462F 0.39 TCGA-GV-A3QK-01 11 76944076 76944076 G A GDPD4 Silent p.F461F 0.39 TCGA-GV-A3QK-01 11 76944087 76944087 G A GDPD4 Missense_Mutation p.H458Y 0.42 tolerated(0.12) benign(0.048) TCGA-GV-A3QK-01 12 100617797 100617797 G C ACTR6 3'UTR 0.26 TCGA-GV-A3QK-01 12 113325677 113325677 G A RPH3A Silent p.L504L 0.24 TCGA-GV-A3QK-01 12 113515459 113515459 C T DTX1 Missense_Mutation p.R164C 0.21 deleterious(0.01) possibly_damaging(0.748) TCGA-GV-A3QK-01 12 113742153 113742153 C T SLC8B1 Silent p.Q510Q 0.20 TCGA-GV-A3QK-01 12 57920934 57920934 C - MBD6 Frame_Shift_Del p.P671Lfs*4 0.46 TCGA-GV-A3QK-01 12 85255375 85255375 A T SLC6A15 3'UTR 0.19 TCGA-GV-A3QK-01 12 8975237 8975237 C G A2ML1 5'UTR 0.21 TCGA-GV-A3QK-01 12 98848832 98848832 C - SLC9A7P1 RNA 0.29 TCGA-GV-A3QK-01 13 110830437 110830437 C T COL4A1 Missense_Mutation p.G867E 0.31 benign(0.172) TCGA-GV-A3QK-01 13 28609758 28609759 - T FLT3 Frame_Shift_Ins p.V491Sfs*15 0.27 TCGA-GV-A3QK-01 13 35731303 35731303 G T NBEA Nonsense_Mutation p.E914* 0.33 TCGA-GV-A3QK-01 13 53421499 53421499 G A PCDH8 Missense_Mutation p.P358L 0.33 deleterious(0) benign(0.007) TCGA-GV-A3QK-01 13 73649881 73649881 G T KLF5 Missense_Mutation p.D411Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QK-01 13 73649892 73649892 C T KLF5 Silent p.F414F 0.28 TCGA-GV-A3QK-01 13 95813572 95813572 C T ABCC4 Missense_Mutation p.V776I 0.20 tolerated(0.65) benign(0.008) TCGA-GV-A3QK-01 13 98116871 98116871 C T RAP2A 3'UTR 0.50 TCGA-GV-A3QK-01 14 100118593 100118593 C T HHIPL1 Silent p.D96D 0.28 TCGA-GV-A3QK-01 14 101436252 101436252 A T SNORD114-13 RNA 0.19 TCGA-GV-A3QK-01 14 104552113 104552113 G A ASPG Silent p.A2A 0.41 TCGA-GV-A3QK-01 14 21359944 21359944 G T RNASE3 Silent p.T33T 0.30 TCGA-GV-A3QK-01 14 24769970 24769970 C T NOP9 Missense_Mutation p.H202Y 0.34 tolerated(0.06) benign(0.014) TCGA-GV-A3QK-01 14 32561150 32561150 G C ARHGAP5 Missense_Mutation p.K425N 0.40 deleterious(0.01) possibly_damaging(0.694) TCGA-GV-A3QK-01 14 38060758 38060762 GCTCC - FOXA1 Frame_Shift_Del p.E410Afs*3 0.23 TCGA-GV-A3QK-01 14 52781184 52781184 C T PTGER2 5'UTR 0.30 TCGA-GV-A3QK-01 14 60750068 60750068 C T PPM1A Missense_Mutation p.S289L 0.32 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 14 69256761 69256761 T C ZFP36L1 Missense_Mutation p.Y169C 0.32 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 14 95884264 95884264 G A SYNE3 Silent p.L943L 0.38 TCGA-GV-A3QK-01 15 54793159 54793159 A C UNC13C Missense_Mutation p.M1762L 0.37 tolerated_low_confidence(0.08) benign(0.065) TCGA-GV-A3QK-01 15 63128203 63128203 C G TLN2 Silent p.S2435S 0.33 TCGA-GV-A3QK-01 15 63927026 63927026 C T HERC1 Missense_Mutation p.G4159E 0.41 probably_damaging(1) TCGA-GV-A3QK-01 15 72030322 72030322 G C THSD4 Missense_Mutation p.E628Q 0.31 deleterious(0.01) benign(0.259) TCGA-GV-A3QK-01 15 73428236 73428236 G A NEO1 Missense_Mutation p.E295K 0.40 tolerated(0.93) benign(0.099) TCGA-GV-A3QK-01 16 24826603 24826603 C G TNRC6A Missense_Mutation p.S1603C 0.42 deleterious(0) possibly_damaging(0.885) TCGA-GV-A3QK-01 16 2820448 2820448 C T SRRM2 Missense_Mutation p.S2706L 0.33 benign(0.184) TCGA-GV-A3QK-01 16 3297033 3297033 C T MEFV Missense_Mutation p.E524K 0.40 tolerated(0.16) possibly_damaging(0.901) TCGA-GV-A3QK-01 16 46744549 46744549 C T MYLK3 Missense_Mutation p.S756N 0.30 deleterious(0) probably_damaging(0.945) TCGA-GV-A3QK-01 16 46766181 46766181 C A MYLK3 Silent p.P467P 0.34 TCGA-GV-A3QK-01 16 49671231 49671231 T A ZNF423 Missense_Mutation p.E611V 0.44 deleterious(0.04) possibly_damaging(0.652) TCGA-GV-A3QK-01 16 67695399 67695399 G A PARD6A Silent p.S35S 0.30 TCGA-GV-A3QK-01 16 75149486 75149486 C T LDHD Missense_Mutation p.V49M 0.14 deleterious(0) benign(0.149) TCGA-GV-A3QK-01 16 75149487 75149487 C T LDHD Silent p.A48A 0.15 TCGA-GV-A3QK-01 16 89629441 89629441 G T RPL13 Missense_Mutation p.K209N 0.34 deleterious(0.01) possibly_damaging(0.621) TCGA-GV-A3QK-01 17 1551226 1551226 G A RILP Missense_Mutation p.P283S 0.39 deleterious(0.01) possibly_damaging(0.71) TCGA-GV-A3QK-01 17 34073278 34073278 C T GAS2L2 Missense_Mutation p.R413K 0.50 deleterious(0.05) benign(0.416) TCGA-GV-A3QK-01 17 37809815 37809815 G A STARD3 Missense_Mutation p.D11N 0.19 deleterious_low_confidence(0.02) benign(0.048) TCGA-GV-A3QK-01 17 44827187 44827187 C A NSF Missense_Mutation p.Q653K 0.22 tolerated(0.42) benign(0.005) TCGA-GV-A3QK-01 17 55023818 55023818 G A COIL Missense_Mutation p.L515F 0.22 deleterious(0.01) probably_damaging(0.909) TCGA-GV-A3QK-01 17 61910950 61910950 G A SMARCD2 Silent p.V438V 0.25 TCGA-GV-A3QK-01 17 66915581 66915581 A G ABCA8 Missense_Mutation p.M550T 0.19 tolerated(0.14) benign(0.009) TCGA-GV-A3QK-01 18 50985651 50985651 C A DCC Missense_Mutation p.L1148I 0.73 tolerated(0.07) possibly_damaging(0.899) TCGA-GV-A3QK-01 18 61383320 61383320 G A SERPINB11 Missense_Mutation p.D137N 0.63 tolerated(0.12) probably_damaging(1) TCGA-GV-A3QK-01 19 10445321 10445321 G C ICAM3 Missense_Mutation p.Q359E 0.33 deleterious(0.05) benign(0.008) TCGA-GV-A3QK-01 19 17992856 17992856 A T SLC5A5 Missense_Mutation p.K382N 0.34 tolerated(0.09) possibly_damaging(0.785) TCGA-GV-A3QK-01 19 18234408 18234408 G A MAST3 Silent p.G163G 0.31 TCGA-GV-A3QK-01 19 2110148 2110148 G A AP3D1 Missense_Mutation p.S1084F 0.33 deleterious(0) benign(0.227) TCGA-GV-A3QK-01 19 34895679 34895679 C T RP11-618P17.4 Silent p.F107F 0.52 TCGA-GV-A3QK-01 19 42463502 42463502 C T RABAC1 5'UTR 0.32 TCGA-GV-A3QK-01 19 52568806 52568806 G A ZNF841 Missense_Mutation p.R777C 0.34 tolerated(0.08) possibly_damaging(0.77) TCGA-GV-A3QK-01 19 54871634 54871634 G A LAIR1 Missense_Mutation p.S137L 0.27 tolerated(0.11) benign(0) TCGA-GV-A3QK-01 19 55512138 55512138 G C NLRP2 Missense_Mutation p.D1021H 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-GV-A3QK-01 19 5668195 5668195 G A SAFB Missense_Mutation p.G883R 0.36 deleterious(0) unknown(0) TCGA-GV-A3QK-01 19 619039 619039 G A POLRMT Silent p.G1075G 0.50 TCGA-GV-A3QK-01 1 103488345 103488345 C G COL11A1 Missense_Mutation p.E400Q 0.24 probably_damaging(0.946) TCGA-GV-A3QK-01 1 154562706 154562706 C G ADAR Missense_Mutation p.R817T 0.35 tolerated_low_confidence(0.38) benign(0.25) TCGA-GV-A3QK-01 1 15789243 15789243 C T CELA2A Silent p.Y81Y 0.34 TCGA-GV-A3QK-01 1 169566333 169566333 G A SELP Missense_Mutation p.S596F 0.44 deleterious(0) probably_damaging(0.913) TCGA-GV-A3QK-01 1 203194936 203194936 G A CHIT1 Missense_Mutation p.R40C 0.38 tolerated(0.12) benign(0.076) TCGA-GV-A3QK-01 1 204923365 204923365 C T NFASC Missense_Mutation p.R89W 0.26 deleterious(0) probably_damaging(0.996) TCGA-GV-A3QK-01 1 24121285 24121285 C T LYPLA2 3'UTR 0.19 TCGA-GV-A3QK-01 1 26515960 26515960 C G CNKSR1 Missense_Mutation p.S688C 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-GV-A3QK-01 1 27107085 27107102 GCGGGCTGCCCGCGCGCT - ARID1A In_Frame_Del p.R2233_L2238del 0.24 TCGA-GV-A3QK-01 1 27943478 27943478 C G FGR Missense_Mutation p.R191T 0.34 tolerated(0.17) possibly_damaging(0.572) TCGA-GV-A3QK-01 1 32204223 32204223 C T BAI2 Silent p.T870T 0.35 TCGA-GV-A3QK-01 1 38032516 38032516 C G GNL2 Missense_Mutation p.K712N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-GV-A3QK-01 1 46976774 46976774 C A DMBX1 Silent p.G167G 0.22 TCGA-GV-A3QK-01 1 54405716 54405716 C T HSPB11 Missense_Mutation p.E14K 0.31 tolerated(0.55) benign(0.02) TCGA-GV-A3QK-01 1 74506961 74506961 C A LRRIQ3 Missense_Mutation p.V552F 0.42 deleterious(0) probably_damaging(0.964) TCGA-GV-A3QK-01 1 89323052 89323052 G A GTF2B Silent p.F218F 0.33 TCGA-GV-A3QK-01 20 23357970 23357970 A T NAPB 3'UTR 0.35 TCGA-GV-A3QK-01 20 33162908 33162908 C T PIGU Silent p.Q398Q 0.31 TCGA-GV-A3QK-01 20 36760817 36760817 G A TGM2 Silent p.L567L 0.29 TCGA-GV-A3QK-01 20 472991 472991 C T CSNK2A1 Nonsense_Mutation p.W176* 0.18 TCGA-GV-A3QK-01 20 47991418 47991418 G A KCNB1 Missense_Mutation p.P227S 0.43 deleterious(0.01) possibly_damaging(0.637) TCGA-GV-A3QK-01 20 50007835 50007835 C T NFATC2 3'UTR 0.35 TCGA-GV-A3QK-01 20 61303309 61303309 G A SLCO4A1 3'UTR 0.31 TCGA-GV-A3QK-01 20 61541160 61541160 G A DIDO1 Missense_Mutation p.T351I 0.40 possibly_damaging(0.743) TCGA-GV-A3QK-01 21 31859546 31859546 G T KRTAP19-2 Nonsense_Mutation p.S41* 0.36 TCGA-GV-A3QK-01 21 35468622 35468622 G C SLC5A3 Silent p.L375L 0.36 TCGA-GV-A3QK-01 21 45106729 45106729 G T RRP1B Missense_Mutation p.D352Y 0.29 deleterious(0.02) benign(0.059) TCGA-GV-A3QK-01 22 30200815 30200815 C T ASCC2 Missense_Mutation p.E389K 0.23 deleterious(0) possibly_damaging(0.536) TCGA-GV-A3QK-01 22 37524480 37524480 G C IL2RB Missense_Mutation p.P438A 0.49 deleterious(0.04) probably_damaging(0.914) TCGA-GV-A3QK-01 2 121708927 121708927 C G GLI2 Nonsense_Mutation p.Y121* 0.09 TCGA-GV-A3QK-01 2 136107676 136107676 C G ZRANB3 Missense_Mutation p.D157H 0.44 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 2 179610937 179610937 G A TTN Intron 0.42 TCGA-GV-A3QK-01 2 223436667 223436667 G A FARSB Missense_Mutation p.H565Y 0.54 deleterious(0) probably_damaging(0.997) TCGA-GV-A3QK-01 2 240061422 240061422 C T HDAC4 Silent p.A312A 0.08 TCGA-GV-A3QK-01 2 242065894 242065894 C T PASK Silent p.R812R 0.49 TCGA-GV-A3QK-01 2 39505628 39505628 C T MAP4K3 Splice_Site p.X572_splice 0.52 TCGA-GV-A3QK-01 2 43452831 43452832 - C ZFP36L2 Frame_Shift_Ins p.T38Dfs*46 0.53 TCGA-GV-A3QK-01 2 48698230 48698230 C T PPP1R21 Missense_Mutation p.S301L 0.52 tolerated(0.06) possibly_damaging(0.811) TCGA-GV-A3QK-01 2 53897698 53897698 T C ASB3 Missense_Mutation p.Y535C 0.24 deleterious(0.01) probably_damaging(1) TCGA-GV-A3QK-01 2 73717138 73717138 A G ALMS1 Silent p.V2683V 0.58 TCGA-GV-A3QK-01 2 96690055 96690055 C T GPAT2 Missense_Mutation p.R567K 0.52 tolerated(0.74) benign(0.14) TCGA-GV-A3QK-01 3 101390721 101390721 C T ZBTB11 Intron 0.48 TCGA-GV-A3QK-01 3 11340868 11340868 T C ATG7 Silent p.L65L 0.25 TCGA-GV-A3QK-01 3 119211370 119211370 A G POGLUT1 3'UTR 0.47 TCGA-GV-A3QK-01 3 127439916 127439916 C G MGLL Missense_Mutation p.E164Q 0.24 deleterious(0.03) benign(0.022) TCGA-GV-A3QK-01 3 183995773 183995773 C G ECE2 Missense_Mutation p.S298C 0.26 deleterious(0) probably_damaging(0.998) TCGA-GV-A3QK-01 3 186760727 186760727 G T ST6GAL1 Missense_Mutation p.G79V 0.23 benign(0.005) TCGA-GV-A3QK-01 3 196159118 196159118 G C UBXN7 Intron 0.32 TCGA-GV-A3QK-01 3 197726164 197726164 C G LMLN Missense_Mutation p.Q395E 0.21 deleterious(0) benign(0.253) TCGA-GV-A3QK-01 3 37125241 37125241 C A LRRFIP2 Missense_Mutation p.Q388H 0.21 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 3 37336557 37336557 C G GOLGA4 Missense_Mutation p.L246V 0.30 probably_damaging(0.999) TCGA-GV-A3QK-01 3 3887651 3887651 G A LRRN1 Silent p.T442T 0.23 TCGA-GV-A3QK-01 3 49005998 49005998 C - ARIH2 Frame_Shift_Del p.R191Vfs*16 0.39 TCGA-GV-A3QK-01 3 51743211 51743211 G A GRM2 Missense_Mutation p.R71H 0.21 deleterious(0.01) benign(0.059) TCGA-GV-A3QK-01 3 56468686 56468686 T C ERC2 Missense_Mutation p.Y117C 0.28 tolerated(0.2) possibly_damaging(0.827) TCGA-GV-A3QK-01 3 75471179 75471179 T C FAM86DP RNA 0.53 TCGA-GV-A3QK-01 4 1107304 1107304 A T RNF212 5'UTR 0.38 TCGA-GV-A3QK-01 4 13338307 13338307 G A HSP90AB2P RNA 0.32 TCGA-GV-A3QK-01 4 142155192 142155192 G A ZNF330 3'UTR 0.30 TCGA-GV-A3QK-01 4 15542459 15542459 G A CC2D2A Splice_Site p.X668_splice 0.21 TCGA-GV-A3QK-01 4 41263746 41263746 C T UCHL1 Silent p.L114L 0.28 TCGA-GV-A3QK-01 4 62813863 62813863 T C LPHN3 Missense_Mutation p.S824P 0.29 deleterious(0) possibly_damaging(0.817) TCGA-GV-A3QK-01 4 6862671 6862671 C G KIAA0232 Missense_Mutation p.L188V 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-GV-A3QK-01 4 77357255 77357255 C G SHROOM3 Missense_Mutation p.S17C 0.34 tolerated_low_confidence(0.06) benign(0.054) TCGA-GV-A3QK-01 4 94750250 94750250 G T ATOH1 Missense_Mutation p.S58I 0.35 deleterious(0) benign(0.177) TCGA-GV-A3QK-01 5 123983602 123983602 T C ZNF608 Silent p.K825K 0.31 TCGA-GV-A3QK-01 5 127674667 127674667 C T FBN2 Missense_Mutation p.E1144K 0.27 tolerated(0.09) benign(0.322) TCGA-GV-A3QK-01 5 137777134 137777134 G A REEP2 Missense_Mutation p.D56N 0.33 deleterious(0) probably_damaging(0.993) TCGA-GV-A3QK-01 5 140188665 140188665 C T PCDHA4 Silent p.I631I 0.30 TCGA-GV-A3QK-01 5 140730728 140730728 G A PCDHGB1 Missense_Mutation p.G301S 0.32 tolerated(0.07) possibly_damaging(0.803) TCGA-GV-A3QK-01 5 16067768 16067768 T C MARCH11 Missense_Mutation p.S341G 0.30 tolerated(0.3) benign(0.001) TCGA-GV-A3QK-01 5 17275799 17275799 C T BASP1 Silent p.A158A 0.29 TCGA-GV-A3QK-01 5 55407474 55407474 C A ANKRD55 Missense_Mutation p.R367S 0.32 tolerated_low_confidence(0.09) benign(0.008) TCGA-GV-A3QK-01 5 55407475 55407475 C A ANKRD55 Missense_Mutation p.R367M 0.31 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-GV-A3QK-01 5 7695949 7695949 C G ADCY2 Silent p.L318L 0.29 TCGA-GV-A3QK-01 6 129794495 129794495 G C LAMA2 Missense_Mutation p.L2479F 0.34 tolerated(0.08) probably_damaging(0.909) TCGA-GV-A3QK-01 6 137815072 137815072 T A OLIG3 Missense_Mutation p.Q79L 0.33 tolerated(0.12) benign(0.225) TCGA-GV-A3QK-01 6 1612318 1612318 C T FOXC1 Silent p.F546F 0.37 TCGA-GV-A3QK-01 6 32906580 32906580 G A HLA-DMB Missense_Mutation p.A73V 0.37 deleterious(0) probably_damaging(0.964) TCGA-GV-A3QK-01 6 83905938 83905938 G C RWDD2A Missense_Mutation p.E276Q 0.29 tolerated(0.51) possibly_damaging(0.856) TCGA-GV-A3QK-01 6 84234199 84234199 G A PRSS35 Missense_Mutation p.G347S 0.42 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 6 99848724 99848724 A G PNISR Missense_Mutation p.F704L 0.33 tolerated_low_confidence(0.48) benign(0.294) TCGA-GV-A3QK-01 7 100681563 100681563 C T MUC17 Missense_Mutation p.T2289M 0.46 unknown(0) TCGA-GV-A3QK-01 7 103368593 103368593 C T RELN Missense_Mutation p.V240I 0.44 tolerated(0.09) benign(0.001) TCGA-GV-A3QK-01 7 143657782 143657782 C A OR2F1 Missense_Mutation p.T240K 0.47 deleterious(0) probably_damaging(0.971) TCGA-GV-A3QK-01 7 149558887 149558887 G A ZNF862 Missense_Mutation p.E880K 0.50 tolerated(0.14) possibly_damaging(0.823) TCGA-GV-A3QK-01 7 154564587 154564587 C T DPP6 Silent p.H357H 0.56 TCGA-GV-A3QK-01 7 19738064 19738064 C T TWISTNB Missense_Mutation p.D298N 0.49 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 7 21857887 21857887 G A DNAH11 Missense_Mutation p.E3548K 0.62 possibly_damaging(0.806) TCGA-GV-A3QK-01 7 38475976 38475976 C T AMPH Missense_Mutation p.E344K 0.49 tolerated(0.51) possibly_damaging(0.799) TCGA-GV-A3QK-01 7 50663213 50663213 C A GRB10 Missense_Mutation p.R520L 0.47 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 8 124748071 124748071 C T ANXA13 Missense_Mutation p.G21E 0.28 tolerated(0.15) benign(0.049) TCGA-GV-A3QK-01 8 139609214 139609214 C T COL22A1 Splice_Site p.X1456_splice 0.34 TCGA-GV-A3QK-01 8 2044236 2044236 G A MYOM2 Missense_Mutation p.E759K 0.32 deleterious(0) possibly_damaging(0.801) TCGA-GV-A3QK-01 8 25267711 25267711 C G DOCK5 Missense_Mutation p.S1834C 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-GV-A3QK-01 8 53568651 53568651 T C RB1CC1 Silent p.L1246L 0.39 TCGA-GV-A3QK-01 8 70588853 70588853 G A SLCO5A1 Nonsense_Mutation p.R694* 0.28 TCGA-GV-A3QK-01 8 94934630 94934630 A G PDP1 Missense_Mutation p.N140D 0.26 deleterious(0) probably_damaging(0.994) TCGA-GV-A3QK-01 9 115171290 115171290 C T HSDL2 Silent p.G128G 0.33 TCGA-GV-A3QK-01 9 115805288 115805288 C G ZFP37 Missense_Mutation p.R537T 0.38 deleterious(0) probably_damaging(1) TCGA-GV-A3QK-01 9 115805738 115805738 C G ZFP37 Missense_Mutation p.R387T 0.32 tolerated(0.57) benign(0.21) TCGA-GV-A3QK-01 9 115806346 115806346 C T ZFP37 Silent p.L184L 0.37 TCGA-GV-A3QK-01 9 115806541 115806541 C G ZFP37 Missense_Mutation p.Q119H 0.32 tolerated(0.54) benign(0.007) TCGA-GV-A3QK-01 9 130217858 130217858 C G LRSAM1 Missense_Mutation p.P45A 0.32 deleterious(0) probably_damaging(0.999) TCGA-GV-A3QK-01 9 134136337 134136337 T G FAM78A Missense_Mutation p.I242L 0.34 tolerated(0.06) benign(0.046) TCGA-GV-A3QK-01 9 135555086 135555086 G A GTF3C4 Missense_Mutation p.E694K 0.34 tolerated_low_confidence(0.26) probably_damaging(0.98) TCGA-GV-A3QK-01 9 99522006 99522006 C T ZNF510 Missense_Mutation p.R369K 0.57 tolerated(0.81) benign(0.007) TCGA-GV-A3QK-01 X 140993238 140993238 G C MAGEC1 Missense_Mutation p.Q16H 0.48 deleterious_low_confidence(0) benign(0.216) TCGA-GV-A3QK-01 X 140995384 140995384 C T MAGEC1 Nonsense_Mutation p.Q732* 0.54 TCGA-GV-A3QK-01 X 149900044 149900044 G A MTMR1 Missense_Mutation p.D274N 0.64 deleterious(0) benign(0.213) TCGA-GV-A3QK-01 X 8997436 8997436 G A FAM9B Missense_Mutation p.S102F 0.24 deleterious(0) probably_damaging(0.995) TCGA-GV-A3QK-01 X 99888429 99888429 C T TSPAN6 Silent p.Q186Q 0.62 TCGA-GV-A40E-01 10 112838906 112838906 G A ADRA2A Silent p.E384E 0.14 TCGA-GV-A40E-01 10 17750829 17750829 A T STAM Missense_Mutation p.M422L 0.28 tolerated(0.19) benign(0.001) TCGA-GV-A40E-01 10 35351949 35351949 C G CUL2 Missense_Mutation p.G73A 0.10 tolerated(1) possibly_damaging(0.748) TCGA-GV-A40E-01 10 43281092 43281092 G C BMS1 Missense_Mutation p.E113D 0.09 tolerated(0.33) probably_damaging(0.997) TCGA-GV-A40E-01 10 43292637 43292637 G T BMS1 Nonsense_Mutation p.E649* 0.05 TCGA-GV-A40E-01 10 72358024 72358024 G C PRF1 Missense_Mutation p.Q485E 0.10 tolerated(1) benign(0.002) TCGA-GV-A40E-01 10 89717615 89717615 C T PTEN Nonsense_Mutation p.Q214* 0.56 TCGA-GV-A40E-01 10 97951695 97951695 C G BLNK 3'UTR 0.08 TCGA-GV-A40E-01 11 108142128 108142129 - T ATM Frame_Shift_Ins p.W1026Lfs*22 0.13 TCGA-GV-A40E-01 11 120996394 120996394 G C TECTA Missense_Mutation p.K529N 0.13 tolerated(0.45) benign(0.023) TCGA-GV-A40E-01 11 130785020 130785020 C G SNX19 Missense_Mutation p.R272T 0.14 tolerated(0.27) benign(0.118) TCGA-GV-A40E-01 11 18737135 18737135 T A IGSF22 Missense_Mutation p.M459L 0.13 tolerated(0.35) benign(0.002) TCGA-GV-A40E-01 11 30439147 30439147 T C MPPED2 Silent p.L190L 0.07 TCGA-GV-A40E-01 11 55595183 55595183 T C OR5L2 Silent p.A163A 0.04 TCGA-GV-A40E-01 11 62415419 62415419 C T INTS5 Silent p.G711G 0.08 TCGA-GV-A40E-01 11 63996776 63996776 G A NUDT22 Missense_Mutation p.E213K 0.21 tolerated(0.24) benign(0.026) TCGA-GV-A40E-01 11 64939959 64939959 T C SPDYC Silent p.F133F 0.08 TCGA-GV-A40E-01 11 65315511 65315511 C A LTBP3 Missense_Mutation p.D576Y 0.05 deleterious(0) possibly_damaging(0.653) TCGA-GV-A40E-01 11 65315517 65315517 C T LTBP3 Splice_Site p.X574_splice 0.05 TCGA-GV-A40E-01 11 70319061 70319061 C G SHANK2 Missense_Mutation p.Q1822H 0.05 deleterious(0.01) possibly_damaging(0.522) TCGA-GV-A40E-01 11 74500681 74500681 C G RNF169 Missense_Mutation p.F171L 0.06 tolerated(0.07) probably_damaging(0.97) TCGA-GV-A40E-01 11 9406332 9406332 G T IPO7 Nonsense_Mutation p.E8* 0.12 TCGA-GV-A40E-01 11 95568599 95568599 C G MTMR2 Missense_Mutation p.R596T 0.06 tolerated(0.1) benign(0.005) TCGA-GV-A40E-01 12 21427510 21427510 A C SLCO1A2 Silent p.P562P 0.09 TCGA-GV-A40E-01 12 33579134 33579134 C G SYT10 Missense_Mutation p.E150Q 0.09 tolerated(0.1) benign(0.177) TCGA-GV-A40E-01 12 47471606 47471606 C G AMIGO2 Missense_Mutation p.E394Q 0.15 tolerated(0.09) probably_damaging(0.998) TCGA-GV-A40E-01 12 49433094 49433094 G - KMT2D Frame_Shift_Del p.I2760Sfs*27 0.35 TCGA-GV-A40E-01 12 5153719 5153719 G A KCNA5 Missense_Mutation p.G136S 0.16 tolerated(0.2) possibly_damaging(0.515) TCGA-GV-A40E-01 12 6078463 6078463 G C VWF Missense_Mutation p.S2548C 0.06 deleterious(0) possibly_damaging(0.869) TCGA-GV-A40E-01 12 7635996 7635996 C T CD163 Missense_Mutation p.G1019R 0.11 tolerated(0.39) probably_damaging(0.958) TCGA-GV-A40E-01 13 23913766 23913766 C T SACS Missense_Mutation p.E1417K 0.12 probably_damaging(0.991) TCGA-GV-A40E-01 13 41946363 41946363 G A NAA16 Missense_Mutation p.V658I 0.63 tolerated(1) benign(0.001) TCGA-GV-A40E-01 14 105408168 105408168 G A AHNAK2 Silent p.A4540A 0.22 TCGA-GV-A40E-01 14 23344898 23344898 G A LRP10 Silent p.V247V 0.12 TCGA-GV-A40E-01 14 23548778 23548778 G A ACIN1 Missense_Mutation p.S647L 0.08 probably_damaging(0.928) TCGA-GV-A40E-01 14 24878129 24878129 C T NYNRIN Silent p.L377L 0.28 TCGA-GV-A40E-01 14 45658163 45658163 A C FANCM Silent p.A1646A 0.19 TCGA-GV-A40E-01 14 53190725 53190725 C G PSMC6 Missense_Mutation p.A355G 0.06 deleterious(0) possibly_damaging(0.883) TCGA-GV-A40E-01 14 60193839 60193839 G T RTN1 Silent p.S521S 0.23 TCGA-GV-A40E-01 14 70793096 70793096 A C COX16 Missense_Mutation p.L92R 0.08 tolerated(0.38) benign(0.444) TCGA-GV-A40E-01 14 79432421 79432421 A G NRXN3 Missense_Mutation p.I444V 0.58 tolerated(0.1) benign(0.104) TCGA-GV-A40E-01 14 86088385 86088385 T C FLRT2 Missense_Mutation p.V176A 0.44 tolerated(0.63) benign(0.004) TCGA-GV-A40E-01 15 29346684 29346684 G A APBA2 Silent p.E199E 0.21 TCGA-GV-A40E-01 15 41020994 41020994 C G RAD51 Missense_Mutation p.Q207E 0.14 tolerated(0.47) benign(0.034) TCGA-GV-A40E-01 15 42054514 42054514 G A MGA Silent p.R2566R 0.17 TCGA-GV-A40E-01 15 44581193 44581193 G A CASC4 5'UTR 0.16 TCGA-GV-A40E-01 15 58465375 58465375 G A AQP9 Missense_Mutation p.G116E 0.17 deleterious(0) probably_damaging(1) TCGA-GV-A40E-01 15 64968122 64968122 G A ZNF609 Silent p.K1023K 0.15 TCGA-GV-A40E-01 15 78790483 78790483 T C IREB2 Nonstop_Mutation p.*964Qext*12 0.13 TCGA-GV-A40E-01 15 88670429 88670429 G A NTRK3 Silent p.I419I 0.11 TCGA-GV-A40E-01 16 427570 427570 G A TMEM8A Silent p.G105G 0.44 TCGA-GV-A40E-01 16 55539318 55539318 G T MMP2 Missense_Mutation p.K649N 0.11 deleterious(0.03) possibly_damaging(0.864) TCGA-GV-A40E-01 16 69681192 69681193 AC T NFAT5 Frame_Shift_Del p.N172Ifs*33 0.14 TCGA-GV-A40E-01 16 75327762 75327762 G A CFDP1 3'UTR 0.17 TCGA-GV-A40E-01 16 77465452 77465452 C G ADAMTS18 Missense_Mutation p.D79H 0.29 tolerated(0.16) benign(0.034) TCGA-GV-A40E-01 17 26962026 26962026 G A KIAA0100 Missense_Mutation p.S860F 0.30 tolerated(0.54) benign(0.003) TCGA-GV-A40E-01 17 29554622 29554622 C G NF1 Missense_Mutation p.Q803E 0.05 tolerated(0.12) benign(0.014) TCGA-GV-A40E-01 17 29664524 29664524 C G NF1 Missense_Mutation p.P2189R 0.07 tolerated(0.15) probably_damaging(0.979) TCGA-GV-A40E-01 17 34149829 34149829 A G TAF15 Missense_Mutation p.H159R 0.07 tolerated_low_confidence(0.05) benign(0.177) TCGA-GV-A40E-01 17 3438937 3438937 G A TRPV3 Silent p.G238G 0.18 TCGA-GV-A40E-01 17 35413968 35413968 C T AATF 3'UTR 0.24 TCGA-GV-A40E-01 17 35486362 35486362 C G ACACA Missense_Mutation p.R1958T 0.08 deleterious(0) probably_damaging(0.995) TCGA-GV-A40E-01 17 36876912 36876912 C G MLLT6 Missense_Mutation p.A785G 0.05 tolerated(0.06) unknown(0) TCGA-GV-A40E-01 17 38711197 38711197 A G CCR7 Missense_Mutation p.Y312H 0.10 tolerated(0.13) probably_damaging(0.986) TCGA-GV-A40E-01 17 38788611 38788611 C T SMARCE1 Missense_Mutation p.D184N 0.35 deleterious(0.03) benign(0.03) TCGA-GV-A40E-01 17 38991162 38991162 C G TMEM99 Missense_Mutation p.H132D 0.05 deleterious_low_confidence(0) benign(0) TCGA-GV-A40E-01 17 45214642 45214642 C G CDC27 Missense_Mutation p.D603H 0.08 deleterious(0) probably_damaging(0.959) TCGA-GV-A40E-01 17 51901912 51901912 C A KIF2B Silent p.S506S 0.17 TCGA-GV-A40E-01 17 58372085 58372085 C T USP32 Missense_Mutation p.D124N 0.10 tolerated(0.11) benign(0.229) TCGA-GV-A40E-01 17 60493466 60493466 G C EFCAB3 Missense_Mutation p.D417H 0.12 deleterious(0) possibly_damaging(0.889) TCGA-GV-A40E-01 17 73625043 73625043 C A RECQL5 Missense_Mutation p.Q820H 0.09 tolerated(0.17) benign(0.014) TCGA-GV-A40E-01 17 76411074 76411074 C G PGS1 Missense_Mutation p.T506R 0.11 deleterious(0) probably_damaging(0.998) TCGA-GV-A40E-01 18 31326430 31326430 A T ASXL3 Silent p.A2206A 0.06 TCGA-GV-A40E-01 18 40851688 40851688 G C SYT4 Missense_Mutation p.S320C 0.12 deleterious(0) probably_damaging(0.935) TCGA-GV-A40E-01 18 76754415 76754415 C A SALL3 Missense_Mutation p.D808E 0.19 tolerated(0.48) benign(0.09) TCGA-GV-A40E-01 19 1080305 1080305 G A HMHA1 Silent p.A601A 0.20 TCGA-GV-A40E-01 19 11313296 11313296 C T DOCK6 Silent p.S1775S 0.08 TCGA-GV-A40E-01 19 17394183 17394183 G T ANKLE1 Missense_Mutation p.G204W 0.12 tolerated(0.06) possibly_damaging(0.888) TCGA-GV-A40E-01 19 17394264 17394264 G C ANKLE1 Missense_Mutation p.E231Q 0.13 tolerated(0.13) benign(0.139) TCGA-GV-A40E-01 19 1817224 1817224 G A REXO1 Silent p.C1065C 0.38 TCGA-GV-A40E-01 19 21991453 21991453 G C ZNF43 Silent p.A462A 0.10 TCGA-GV-A40E-01 19 2733469 2733469 C G SLC39A3 Silent p.L75L 0.07 TCGA-GV-A40E-01 19 39516075 39516075 C T FBXO27 Silent p.V276V 0.05 TCGA-GV-A40E-01 19 41239168 41239168 G A ITPKC Missense_Mutation p.E525K 0.10 deleterious(0.01) possibly_damaging(0.837) TCGA-GV-A40E-01 19 44740795 44740795 C A ZNF227 Missense_Mutation p.H738N 0.09 deleterious(0) probably_damaging(0.996) TCGA-GV-A40E-01 19 46375619 46375619 C T FOXA3 Missense_Mutation p.P119L 0.10 deleterious(0) probably_damaging(1) TCGA-GV-A40E-01 19 49949615 49949615 C G PIH1D1 3'UTR 0.08 TCGA-GV-A40E-01 19 51301447 51301447 C T C19orf48 Missense_Mutation p.E87K 0.12 tolerated_low_confidence(0.06) possibly_damaging(0.486) TCGA-GV-A40E-01 19 52570184 52570184 G C ZNF841 Nonsense_Mutation p.Y317* 0.12 TCGA-GV-A40E-01 19 56539147 56539147 C T NLRP5 Silent p.V516V 0.21 TCGA-GV-A40E-01 19 58946488 58946488 G A ZNF132 Missense_Mutation p.P108L 0.11 tolerated(0.27) benign(0.081) TCGA-GV-A40E-01 1 115168392 115168392 C T DENND2C Missense_Mutation p.D72N 0.12 tolerated(0.29) benign(0.06) TCGA-GV-A40E-01 1 12065806 12065806 C G MFN2 Missense_Mutation p.Q512E 0.20 tolerated(0.1) possibly_damaging(0.622) TCGA-GV-A40E-01 1 152323576 152323576 G A FLG2 Missense_Mutation p.T2229I 0.29 benign(0.056) TCGA-GV-A40E-01 1 152325626 152325626 G T FLG2 Missense_Mutation p.Q1546K 0.13 possibly_damaging(0.766) TCGA-GV-A40E-01 1 154920741 154920741 G C PBXIP1 Missense_Mutation p.Q171E 0.28 tolerated(0.07) benign(0.16) TCGA-GV-A40E-01 1 154988787 154988787 G A ZBTB7B Missense_Mutation p.D450N 0.24 deleterious(0) probably_damaging(0.988) TCGA-GV-A40E-01 1 155112686 155112686 G A DPM3 Silent p.L41L 0.42 TCGA-GV-A40E-01 1 174418439 174418439 G C GPR52 3'UTR 0.11 TCGA-GV-A40E-01 1 196876562 196876562 G T CFHR4 Nonsense_Mutation p.E244* 0.09 TCGA-GV-A40E-01 1 231060618 231060618 C G TTC13 Missense_Mutation p.D564H 0.14 deleterious(0) probably_damaging(0.993) TCGA-GV-A40E-01 1 232649719 232649719 G C SIPA1L2 Missense_Mutation p.S456C 0.11 deleterious(0) probably_damaging(0.998) TCGA-GV-A40E-01 1 247151507 247151507 C A ZNF695 Missense_Mutation p.V104F 0.28 tolerated(0.07) benign(0.014) TCGA-GV-A40E-01 1 28362171 28362171 G C EYA3 Nonsense_Mutation p.S82* 0.05 TCGA-GV-A40E-01 1 28817515 28817515 C G PHACTR4 Silent p.L633L 0.09 TCGA-GV-A40E-01 1 35649990 35649990 G C SFPQ 3'UTR 0.10 TCGA-GV-A40E-01 1 44156655 44156655 A T KDM4A Missense_Mutation p.Y726F 0.14 tolerated(0.5) possibly_damaging(0.899) TCGA-GV-A40E-01 20 33762599 33762599 G A PROCR Silent p.T55T 0.06 TCGA-GV-A40E-01 20 37153561 37153561 C A RALGAPB Nonsense_Mutation p.S587* 0.17 TCGA-GV-A40E-01 20 60966489 60966494 CTCCGC - CABLES2 In_Frame_Del p.M369_S371delinsI 0.30 TCGA-GV-A40E-01 21 43938572 43938572 G A SLC37A1 Missense_Mutation p.R3Q 0.26 tolerated(0.64) benign(0.001) TCGA-GV-A40E-01 21 44174150 44174150 C T PDE9A Silent p.D262D 0.10 TCGA-GV-A40E-01 22 19175135 19175135 G T CLTCL1 Missense_Mutation p.L1514M 0.11 deleterious(0) probably_damaging(0.99) TCGA-GV-A40E-01 22 25320295 25320295 C T SGSM1 3'UTR 0.30 TCGA-GV-A40E-01 22 35808507 35808507 C T MCM5 Silent p.R308R 0.08 TCGA-GV-A40E-01 22 39770522 39770522 C G SYNGR1 Missense_Mutation p.R101G 0.07 deleterious(0) probably_damaging(0.994) TCGA-GV-A40E-01 22 40814492 40814492 G A MKL1 Silent p.I650I 0.06 TCGA-GV-A40E-01 2 11355053 11355053 C G ROCK2 Missense_Mutation p.E617Q 0.06 tolerated(0.34) benign(0.14) TCGA-GV-A40E-01 2 170063207 170063207 G C LRP2 Silent p.V2341V 0.13 TCGA-GV-A40E-01 2 178346824 178346824 C G AGPS Missense_Mutation p.I381M 0.16 deleterious(0) probably_damaging(0.953) TCGA-GV-A40E-01 2 179474920 179474920 G T TTN Silent p.L17111L 0.10 TCGA-GV-A40E-01 2 179640747 179640747 C G TTN Missense_Mutation p.E1948D 0.07 TCGA-GV-A40E-01 2 183817542 183817542 C T NCKAP1 Missense_Mutation p.E834K 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-GV-A40E-01 2 18757543 18757543 G A NT5C1B Silent p.L472L 0.05 TCGA-GV-A40E-01 2 190728630 190728630 C G PMS1 Missense_Mutation p.S673C 0.10 tolerated(0.06) benign(0.078) TCGA-GV-A40E-01 2 197521488 197521488 G A CCDC150 Missense_Mutation p.R103Q 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-GV-A40E-01 2 198607796 198607796 C G BOLL Missense_Mutation p.E285Q 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.713) TCGA-GV-A40E-01 2 205969201 205969201 G C PARD3B Missense_Mutation p.E186Q 0.18 tolerated(0.1) possibly_damaging(0.533) TCGA-GV-A40E-01 2 45233476 45233476 G A SIX2 Missense_Mutation p.P237S 0.10 tolerated(0.88) benign(0) TCGA-GV-A40E-01 2 54482756 54482756 C G TSPYL6 Missense_Mutation p.R178T 0.08 tolerated(0.19) benign(0.229) TCGA-GV-A40E-01 2 71337220 71337220 C G MCEE Missense_Mutation p.L137F 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-GV-A40E-01 2 73493771 73493771 C T FBXO41 Silent p.A315A 0.08 TCGA-GV-A40E-01 2 75917840 75917840 C T GCFC2 Missense_Mutation p.D384N 0.10 tolerated(0.47) benign(0.035) TCGA-GV-A40E-01 2 9498900 9498900 C A ASAP2 Missense_Mutation p.S448Y 0.12 deleterious(0) probably_damaging(1) TCGA-GV-A40E-01 3 133614283 133614283 G A RAB6B Missense_Mutation p.P10S 0.08 tolerated(0.11) benign(0.005) TCGA-GV-A40E-01 3 196387064 196387064 C T NRROS Missense_Mutation p.R184W 0.10 deleterious(0.04) benign(0.04) TCGA-GV-A40E-01 3 38783971 38783971 A C SCN10A Silent p.S639S 0.12 TCGA-GV-A40E-01 3 49063798 49063798 C T IMPDH2 Missense_Mutation p.R322Q 0.08 deleterious(0) probably_damaging(0.972) TCGA-GV-A40E-01 3 52256140 52256140 T G TLR9 Missense_Mutation p.N885T 0.09 tolerated(0.15) probably_damaging(0.999) TCGA-GV-A40E-01 3 52962228 52962228 G A SFMBT1 Silent p.L343L 0.09 TCGA-GV-A40E-01 3 99881159 99881159 G A CMSS1 Missense_Mutation p.D80N 0.45 deleterious(0) probably_damaging(0.99) TCGA-GV-A40E-01 4 123900543 123900543 T G SPATA5 Splice_Site p.X623_splice 0.07 TCGA-GV-A40E-01 4 134072052 134072052 C T PCDH10 Missense_Mutation p.P253S 0.06 tolerated(1) benign(0.002) TCGA-GV-A40E-01 4 155254442 155254442 T G DCHS2 Missense_Mutation p.N474T 0.14 deleterious(0.03) possibly_damaging(0.589) TCGA-GV-A40E-01 4 170017810 170017810 G A SH3RF1 Nonsense_Mutation p.Q843* 0.13 TCGA-GV-A40E-01 4 185622015 185622015 C G CENPU Missense_Mutation p.K315N 0.08 deleterious(0) probably_damaging(0.979) TCGA-GV-A40E-01 4 187201424 187201424 G A F11 Missense_Mutation p.E305K 0.07 deleterious(0.02) possibly_damaging(0.745) TCGA-GV-A40E-01 4 41941219 41941219 T C TMEM33 Silent p.H49H 0.09 TCGA-GV-A40E-01 4 48862870 48862870 C G OCIAD1 3'UTR 0.09 TCGA-GV-A40E-01 4 56818365 56818365 G C CEP135 Missense_Mutation p.Q23H 0.09 deleterious(0.05) benign(0.035) TCGA-GV-A40E-01 4 71114859 71114859 C T CSN3 Missense_Mutation p.R78C 0.08 deleterious(0.04) possibly_damaging(0.898) TCGA-GV-A40E-01 4 89039320 89039320 G C ABCG2 Nonsense_Mutation p.S261* 0.07 TCGA-GV-A40E-01 5 112179759 112179759 C G APC Missense_Mutation p.T2823R 0.47 possibly_damaging(0.87) TCGA-GV-A40E-01 5 140256667 140256667 C T PCDHA12 Missense_Mutation p.A537V 0.54 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-GV-A40E-01 5 140890659 140890659 C T PCDHGB6 Silent p.N904N 0.06 TCGA-GV-A40E-01 5 145890061 145890061 A G TCERG1 Silent p.L1051L 0.40 TCGA-GV-A40E-01 5 153144142 153144142 G C GRIA1 Missense_Mutation p.E668Q 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-GV-A40E-01 5 36163852 36163852 G A SKP2 Missense_Mutation p.R129H 0.07 tolerated(0.13) benign(0.003) TCGA-GV-A40E-01 5 39308390 39308390 G C C9 Missense_Mutation p.I394M 0.04 tolerated(0.15) possibly_damaging(0.674) TCGA-GV-A40E-01 5 5457794 5457794 G C KIAA0947 Silent p.V347V 0.13 TCGA-GV-A40E-01 5 89985813 89985813 C A GPR98 Missense_Mutation p.T2209K 0.55 possibly_damaging(0.788) TCGA-GV-A40E-01 5 98212205 98212205 C A CHD1 Missense_Mutation p.D1099Y 0.05 deleterious(0) possibly_damaging(0.827) TCGA-GV-A40E-01 6 127611373 127611373 T C ECHDC1 Missense_Mutation p.I189V 0.10 tolerated(0.2) benign(0.026) TCGA-GV-A40E-01 6 136600967 136600967 G T BCLAF1 Nonsense_Mutation p.S13* 0.10 TCGA-GV-A40E-01 6 148864865 148864865 C G SASH1 Silent p.P753P 0.19 TCGA-GV-A40E-01 6 149901812 149901812 A C GINM1 Missense_Mutation p.K224Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-GV-A40E-01 6 151671634 151671634 G A AKAP12 Missense_Mutation p.G703E 0.10 tolerated(0.24) benign(0.024) TCGA-GV-A40E-01 6 152621819 152621819 C G SYNE1 Missense_Mutation p.R5880P 0.08 benign(0.009) TCGA-GV-A40E-01 6 152712644 152712644 G A SYNE1 Missense_Mutation p.A2591V 0.05 benign(0.019) TCGA-GV-A40E-01 6 26234919 26234919 G C HIST1H1D Missense_Mutation p.I81M 0.12 deleterious(0) probably_damaging(0.996) TCGA-GV-A40E-01 6 31918657 31918657 C G CFB Silent p.L1099L 0.12 TCGA-GV-A40E-01 6 36651924 36651925 AA - CDKN1A Frame_Shift_Del p.K16Gfs*19 0.50 TCGA-GV-A40E-01 6 56882036 56882037 - T BEND6 Frame_Shift_Ins p.N185* 0.36 TCGA-GV-A40E-01 6 7585963 7585963 C A DSP Missense_Mutation p.P2823Q 0.16 probably_damaging(0.999) TCGA-GV-A40E-01 6 79577433 79577433 A C IRAK1BP1 Missense_Mutation p.Q47P 0.19 tolerated(0.14) benign(0.004) TCGA-GV-A40E-01 7 102669092 102669092 G A FBXL13 Missense_Mutation p.H58Y 0.07 tolerated(0.53) benign(0.003) TCGA-GV-A40E-01 7 114294094 114294097 ATAG - FOXP2 Intron 0.11 TCGA-GV-A40E-01 7 128852324 128852324 G A SMO 3'UTR 0.12 TCGA-GV-A40E-01 7 143701410 143701410 C G OR6B1 Silent p.L107L 0.05 TCGA-GV-A40E-01 7 150845868 150845868 G A GBX1 Silent p.L300L 0.05 TCGA-GV-A40E-01 7 2954983 2954983 C G CARD11 Missense_Mutation p.K909N 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-GV-A40E-01 7 2956960 2956960 G C CARD11 Silent p.L889L 0.09 TCGA-GV-A40E-01 7 44746824 44746824 G A OGDH Missense_Mutation p.G878E 0.05 tolerated(0.18) benign(0.309) TCGA-GV-A40E-01 7 65817531 65817531 G C TPST1 Missense_Mutation p.E362Q 0.11 tolerated_low_confidence(0.47) benign(0.004) TCGA-GV-A40E-01 7 82585934 82585934 C T PCLO Silent p.Q1445Q 0.35 TCGA-GV-A40E-01 8 107719297 107719297 G C OXR1 Missense_Mutation p.Q517H 0.07 deleterious(0.01) possibly_damaging(0.67) TCGA-GV-A40E-01 8 107773566 107773566 C T ABRA Missense_Mutation p.G282E 0.43 deleterious(0) probably_damaging(0.987) TCGA-GV-A40E-01 8 133827086 133827086 G C PHF20L1 Missense_Mutation p.D379H 0.12 deleterious(0.02) possibly_damaging(0.681) TCGA-GV-A40E-01 8 25365244 25365244 G C CDCA2 Missense_Mutation p.R1021T 0.06 tolerated_low_confidence(0.19) benign(0.073) TCGA-GV-A40E-01 8 98288924 98288924 C T TSPYL5 Silent p.L383L 0.12 TCGA-GV-A40E-01 9 113444998 113444998 G C MUSK Missense_Mutation p.E42Q 0.07 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-GV-A40E-01 9 126794886 126794886 C T LHX2 Missense_Mutation p.T374I 0.10 deleterious(0.01) probably_damaging(0.915) TCGA-GV-A40E-01 9 127572714 127572714 G C OLFML2A 3'UTR 0.31 TCGA-GV-A40E-01 9 131010868 131010868 G T DNM1 Nonsense_Mutation p.E638* 0.11 TCGA-GV-A40E-01 9 139750491 139750491 G A MAMDC4 Missense_Mutation p.R537Q 0.14 tolerated(0.33) benign(0.016) TCGA-GV-A40E-01 9 19093277 19093277 G C HAUS6 Missense_Mutation p.Q110E 0.11 tolerated(0.13) possibly_damaging(0.547) TCGA-GV-A40E-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-GV-A40E-01 9 34977116 34977116 G T KIAA1045 Nonsense_Mutation p.E296* 0.25 TCGA-GV-A40E-01 9 96079823 96079823 G A WNK2 Missense_Mutation p.V2217M 0.48 unknown(0) TCGA-GV-A40E-01 X 119293071 119293071 A - RHOXF2 Frame_Shift_Del p.D79Mfs*93 0.17 TCGA-GV-A40E-01 X 23411319 23411319 G T PTCHD1 Nonsense_Mutation p.E562* 0.05 TCGA-GV-A40E-01 X 76939791 76939791 C G ATRX Missense_Mutation p.K319N 0.11 probably_damaging(0.996) TCGA-GV-A40E-01 Y 2847298 2847298 C T ZFY Missense_Mutation p.S557L 0.19 deleterious(0) probably_damaging(0.975) TCGA-GV-A40G-01 10 106982952 106982952 G C SORCS3 Missense_Mutation p.W938S 0.85 deleterious(0.01) possibly_damaging(0.756) TCGA-GV-A40G-01 10 12077455 12077455 G A UPF2 5'UTR 0.38 TCGA-GV-A40G-01 10 126523241 126523241 G A FAM175B Missense_Mutation p.E317K 0.29 deleterious(0.04) possibly_damaging(0.477) TCGA-GV-A40G-01 10 135350635 135350635 G C CYP2E1 Missense_Mutation p.E346Q 0.25 tolerated(1) benign(0.005) TCGA-GV-A40G-01 10 3180309 3180309 C T PITRM1 Missense_Mutation p.G1011S 0.42 tolerated(0.39) benign(0.01) TCGA-GV-A40G-01 10 73571082 73571082 A G CDH23 Missense_Mutation p.M790V 0.55 tolerated(0.08) benign(0.002) TCGA-GV-A40G-01 11 111853166 111853166 A G DIXDC1 Silent p.L290L 0.14 TCGA-GV-A40G-01 11 119020905 119020905 G A ABCG4 Missense_Mutation p.R77H 0.36 tolerated(0.13) benign(0.038) TCGA-GV-A40G-01 11 1605847 1605847 G A KRTAP5-1 Silent p.P211P 0.29 TCGA-GV-A40G-01 11 48267353 48267353 G A OR4X2 Missense_Mutation p.G233E 0.14 deleterious(0) possibly_damaging(0.9) TCGA-GV-A40G-01 11 48346728 48346728 C T OR4C3 Missense_Mutation p.T79M 0.33 tolerated(0.08) benign(0.049) TCGA-GV-A40G-01 11 4967470 4967470 C T OR51A4 Silent p.L287L 0.35 TCGA-GV-A40G-01 11 49974164 49974164 C T OR4C13 Missense_Mutation p.L64F 0.09 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-GV-A40G-01 11 55037973 55037973 G T TRIM48 3'UTR 0.71 TCGA-GV-A40G-01 11 58126261 58126261 G A OR5B17 Silent p.A94A 0.51 TCGA-GV-A40G-01 11 64368979 64368979 C T SLC22A12 Missense_Mutation p.H540Y 0.26 tolerated(0.2) benign(0.169) TCGA-GV-A40G-01 11 66206132 66206132 C G MRPL11 Missense_Mutation p.G32R 0.76 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 11 6891085 6891085 C A OR10A2 Missense_Mutation p.L34M 0.30 tolerated(0.12) benign(0.213) TCGA-GV-A40G-01 11 72012890 72012890 G A CLPB Missense_Mutation p.A459V 0.03 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 11 73689056 73689056 C A UCP2 Missense_Mutation p.R71L 0.57 deleterious(0.01) possibly_damaging(0.545) TCGA-GV-A40G-01 11 88070744 88070744 G A CTSC Missense_Mutation p.L33F 0.42 deleterious(0.02) benign(0.012) TCGA-GV-A40G-01 11 92532148 92532148 C T FAT3 Missense_Mutation p.S1990L 0.40 possibly_damaging(0.864) TCGA-GV-A40G-01 12 10124175 10124175 G A CLEC12A Splice_Site p.X4_splice 0.45 TCGA-GV-A40G-01 12 23793806 23793806 G T SOX5 Silent p.I319I 0.40 TCGA-GV-A40G-01 12 31633168 31633168 A T DENND5B Missense_Mutation p.S87T 0.15 tolerated(0.07) possibly_damaging(0.62) TCGA-GV-A40G-01 12 32136195 32136195 C A KIAA1551 Nonsense_Mutation p.S769* 0.38 TCGA-GV-A40G-01 12 46230707 46230707 C T ARID2 Missense_Mutation p.S319F 0.25 deleterious(0) possibly_damaging(0.656) TCGA-GV-A40G-01 12 4835870 4835870 G T GALNT8 Missense_Mutation p.W128C 0.47 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 12 50044617 50044617 C T FMNL3 Silent p.A614A 0.28 TCGA-GV-A40G-01 12 52449884 52449884 G A NR4A1 Missense_Mutation p.R329Q 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-GV-A40G-01 12 64875732 64875732 G A TBK1 Missense_Mutation p.R308Q 0.26 deleterious(0) possibly_damaging(0.774) TCGA-GV-A40G-01 12 95656756 95656756 G T VEZT Silent p.L111L 0.26 TCGA-GV-A40G-01 13 101720314 101720314 G A NALCN Missense_Mutation p.R1468C 0.06 deleterious(0) probably_damaging(0.998) TCGA-GV-A40G-01 13 103249446 103249446 G A TPP2 Missense_Mutation p.E20K 0.24 deleterious(0) probably_damaging(0.998) TCGA-GV-A40G-01 13 103498541 103498541 T C ERCC5 5'UTR 0.30 TCGA-GV-A40G-01 13 115089871 115089871 C T CHAMP1 Missense_Mutation p.P185L 0.22 deleterious(0) probably_damaging(0.999) TCGA-GV-A40G-01 13 49039498 49039498 G - RB1 Frame_Shift_Del p.R828Nfs*5 0.37 TCGA-GV-A40G-01 13 49050981 49050981 T C RB1 Splice_Site p.X888_splice 0.25 TCGA-GV-A40G-01 14 101491923 101491923 G A MIR1197 RNA 0.42 TCGA-GV-A40G-01 14 103426018 103426018 T C CDC42BPB Missense_Mutation p.I951V 0.81 tolerated(0.12) benign(0.004) TCGA-GV-A40G-01 14 57052563 57052563 C T TMEM260 Missense_Mutation p.R93C 0.29 deleterious(0) probably_damaging(0.996) TCGA-GV-A40G-01 14 78140154 78140154 C G ALKBH1 3'UTR 0.29 TCGA-GV-A40G-01 14 78140190 78140190 C T ALKBH1 Missense_Mutation p.E379K 0.37 tolerated_low_confidence(0.75) benign(0.002) TCGA-GV-A40G-01 15 25302060 25302060 G A SNORD116-3 RNA 0.29 TCGA-GV-A40G-01 15 28456242 28456242 G A HERC2 Silent p.I2325I 0.35 TCGA-GV-A40G-01 15 60740312 60740312 C G NARG2 Missense_Mutation p.D718H 0.36 deleterious(0) probably_damaging(0.984) TCGA-GV-A40G-01 16 21696662 21696662 G C OTOA Missense_Mutation p.E127Q 0.08 tolerated(0.27) possibly_damaging(0.642) TCGA-GV-A40G-01 16 25258366 25258366 C T ZKSCAN2 Missense_Mutation p.C384Y 0.55 tolerated(1) possibly_damaging(0.857) TCGA-GV-A40G-01 16 2580885 2580885 C T CEMP1 Missense_Mutation p.V64M 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.781) TCGA-GV-A40G-01 16 31228334 31228334 C T PYDC1 Missense_Mutation p.E6K 0.09 deleterious(0.01) benign(0.067) TCGA-GV-A40G-01 16 3139654 3139654 G A ZSCAN10 Missense_Mutation p.A539V 0.21 tolerated(0.34) probably_damaging(0.997) TCGA-GV-A40G-01 16 69184784 69184784 C G CIRH1A Missense_Mutation p.L327V 0.26 deleterious(0.02) benign(0.443) TCGA-GV-A40G-01 16 70841650 70841650 C T HYDIN Missense_Mutation p.E5067K 0.23 benign(0.017) TCGA-GV-A40G-01 16 71682799 71682799 T A PHLPP2 Silent p.A1322A 0.63 TCGA-GV-A40G-01 16 775574 775574 G A CCDC78 Missense_Mutation p.R92W 0.21 tolerated(0.22) benign(0.007) TCGA-GV-A40G-01 17 27011886 27011886 G T SUPT6H Silent p.L798L 0.31 TCGA-GV-A40G-01 17 27031334 27031334 C T PROCA1 Missense_Mutation p.R116Q 0.17 deleterious(0) benign(0.001) TCGA-GV-A40G-01 17 27893269 27893269 C G ABHD15 Missense_Mutation p.G239A 0.20 tolerated(0.06) probably_damaging(0.979) TCGA-GV-A40G-01 17 3119784 3119784 G A OR1A1 Silent p.L290L 0.25 TCGA-GV-A40G-01 17 34894046 34894046 C T PIGW Nonsense_Mutation p.R366* 0.06 TCGA-GV-A40G-01 17 37866359 37866359 G T ERBB2 Missense_Mutation p.G222C 0.69 deleterious(0.01) possibly_damaging(0.66) TCGA-GV-A40G-01 17 39597029 39597029 C T KRT38 Missense_Mutation p.V49M 0.08 tolerated(0.16) benign(0.032) TCGA-GV-A40G-01 17 40175690 40175690 G A NKIRAS2 Missense_Mutation p.G119S 0.20 deleterious(0.01) probably_damaging(1) TCGA-GV-A40G-01 17 41622709 41622709 G T ETV4 Silent p.R29R 0.61 TCGA-GV-A40G-01 17 42457993 42457993 C T ITGA2B Missense_Mutation p.G472R 0.39 tolerated(0.05) possibly_damaging(0.845) TCGA-GV-A40G-01 17 4721806 4721807 - A PLD2 Frame_Shift_Ins p.V677Sfs*14 0.16 TCGA-GV-A40G-01 17 48628894 48628894 T C SPATA20 Silent p.A533A 0.12 TCGA-GV-A40G-01 17 4883062 4883062 G A CAMTA2 Missense_Mutation p.P542S 0.29 tolerated(0.32) benign(0.008) TCGA-GV-A40G-01 17 74011020 74011020 G A EVPL Silent p.A733A 0.05 TCGA-GV-A40G-01 17 7577084 7577084 T A TP53 Missense_Mutation p.E285V 0.44 deleterious(0) probably_damaging(0.978) TCGA-GV-A40G-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.43 deleterious(0) probably_damaging(0.997) TCGA-GV-A40G-01 17 78180861 78180861 C T CARD14 Silent p.N928N 0.61 TCGA-GV-A40G-01 17 79860514 79860514 G A NPB Missense_Mutation p.V90I 0.15 tolerated(0.66) benign(0.023) TCGA-GV-A40G-01 17 80400084 80400084 G A HEXDC Silent p.R458R 0.19 TCGA-GV-A40G-01 17 8285552 8285552 C T RPL26 Missense_Mutation p.R26Q 0.21 tolerated(0.06) possibly_damaging(0.879) TCGA-GV-A40G-01 18 29122517 29122517 G T DSG2 Missense_Mutation p.G679V 0.10 tolerated(0.24) benign(0.003) TCGA-GV-A40G-01 19 11312572 11312572 C T DOCK6 Missense_Mutation p.R1894Q 0.25 deleterious(0) possibly_damaging(0.783) TCGA-GV-A40G-01 19 12856516 12856520 GCGGG - ASNA1 Frame_Shift_Del p.R185Pfs*54 0.17 TCGA-GV-A40G-01 19 14887630 14887630 C A EMR2 5'UTR 0.59 TCGA-GV-A40G-01 19 18779242 18779242 G A KLHL26 Silent p.T345T 0.48 TCGA-GV-A40G-01 19 2111719 2111719 C T AP3D1 Missense_Mutation p.E966K 0.33 tolerated_low_confidence(0.64) benign(0.003) TCGA-GV-A40G-01 19 22847804 22847804 G T ZNF492 Nonsense_Mutation p.G445* 0.34 TCGA-GV-A40G-01 19 22847805 22847805 G T ZNF492 Missense_Mutation p.G445V 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-GV-A40G-01 19 35449114 35449114 G A ZNF792 Silent p.L549L 0.25 TCGA-GV-A40G-01 19 38845387 38845387 G C CATSPERG Missense_Mutation p.K345N 0.03 deleterious(0.01) possibly_damaging(0.607) TCGA-GV-A40G-01 19 41248439 41248439 G A C19orf54 Missense_Mutation p.R319W 0.48 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 19 42866549 42866549 G A MEGF8 Missense_Mutation p.R1886H 0.44 tolerated(0.13) benign(0.001) TCGA-GV-A40G-01 19 44222828 44222828 G A IRGC Missense_Mutation p.A40T 0.05 deleterious(0.04) benign(0.034) TCGA-GV-A40G-01 19 44832186 44832186 G A ZNF112 Silent p.V714V 0.23 TCGA-GV-A40G-01 19 45593632 45593632 G A GEMIN7 Missense_Mutation p.R87H 0.21 tolerated(0.96) benign(0.001) TCGA-GV-A40G-01 19 47646784 47646784 G A SAE1 Silent p.L44L 0.14 TCGA-GV-A40G-01 19 48919345 48919345 C T GRIN2D Silent p.F556F 0.15 TCGA-GV-A40G-01 19 50881790 50881790 G A NR1H2 Missense_Mutation p.E162K 0.17 deleterious(0.01) possibly_damaging(0.841) TCGA-GV-A40G-01 19 51742831 51742831 C T CD33 Missense_Mutation p.A328V 0.27 tolerated(0.11) benign(0.004) TCGA-GV-A40G-01 19 53344325 53344325 C T ZNF468 Missense_Mutation p.E408K 0.21 deleterious(0.03) possibly_damaging(0.849) TCGA-GV-A40G-01 19 54314478 54314478 C A NLRP12 Silent p.A145A 0.16 TCGA-GV-A40G-01 19 55451478 55451478 C T NLRP7 Missense_Mutation p.D237N 0.21 tolerated(0.86) benign(0.345) TCGA-GV-A40G-01 19 57910071 57910071 C T ZNF548 Missense_Mutation p.S151L 0.18 tolerated(0.08) probably_damaging(0.996) TCGA-GV-A40G-01 19 59073868 59073868 C A MZF1 Silent p.T592T 0.15 TCGA-GV-A40G-01 19 7684884 7684884 C T XAB2 Missense_Mutation p.E782K 0.20 tolerated(0.53) benign(0.038) TCGA-GV-A40G-01 19 7831632 7831632 C G CLEC4M Missense_Mutation p.S292C 0.16 deleterious(0) probably_damaging(0.999) TCGA-GV-A40G-01 19 9960182 9960182 C T PIN1 3'UTR 0.10 TCGA-GV-A40G-01 1 111061072 111061072 C T KCNA10 Missense_Mutation p.G113E 0.32 deleterious(0) probably_damaging(0.999) TCGA-GV-A40G-01 1 145103968 145103968 G A SEC22B RNA 0.31 TCGA-GV-A40G-01 1 145440061 145440064 AAAG - TXNIP Frame_Shift_Del p.K167Ffs*63 0.19 TCGA-GV-A40G-01 1 152283577 152283577 G C FLG Missense_Mutation p.T1262R 0.10 possibly_damaging(0.803) TCGA-GV-A40G-01 1 152324511 152324511 C G FLG2 Missense_Mutation p.K1917N 0.11 possibly_damaging(0.573) TCGA-GV-A40G-01 1 156500962 156500962 G A IQGAP3 Missense_Mutation p.S1394F 0.14 deleterious(0) possibly_damaging(0.759) TCGA-GV-A40G-01 1 158325145 158325145 C T CD1E Silent p.F137F 0.14 TCGA-GV-A40G-01 1 169505755 169505755 C T F5 Missense_Mutation p.D1654N 0.15 deleterious(0) probably_damaging(0.998) TCGA-GV-A40G-01 1 1848429 1848429 G T CALML6 Missense_Mutation p.A139S 0.30 deleterious(0.03) benign(0.185) TCGA-GV-A40G-01 1 208072507 208072507 A G CD34 Silent p.S109S 0.66 TCGA-GV-A40G-01 1 223177436 223177436 G A DISP1 Silent p.R899R 0.37 TCGA-GV-A40G-01 1 223465953 223465953 G A SUSD4 Silent p.P63P 0.60 TCGA-GV-A40G-01 1 241099994 241099994 T C RGS7 Missense_Mutation p.H80R 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-GV-A40G-01 1 248343646 248343646 A G OR2M2 Missense_Mutation p.Y120C 0.20 deleterious(0.01) probably_damaging(1) TCGA-GV-A40G-01 1 37319237 37319237 C A GRIK3 Silent p.L397L 0.39 TCGA-GV-A40G-01 1 46656005 46656005 C A POMGNT1 Intron 0.47 TCGA-GV-A40G-01 1 6445578 6445578 G C ACOT7 Missense_Mutation p.P50R 0.36 tolerated_low_confidence(0.18) benign(0.001) TCGA-GV-A40G-01 1 70488833 70488833 G A LRRC7 Missense_Mutation p.E486K 0.19 tolerated(0.2) benign(0.006) TCGA-GV-A40G-01 1 70616831 70616831 C T LRRC40 Silent p.T499T 0.23 TCGA-GV-A40G-01 20 21309203 21309203 C T XRN2 Missense_Mutation p.R108C 0.22 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 20 32336863 32336863 C - ZNF341 Frame_Shift_Del p.P160Hfs*7 0.25 TCGA-GV-A40G-01 20 43138622 43138622 G A SERINC3 Nonsense_Mutation p.Q175* 0.02 TCGA-GV-A40G-01 20 44756829 44756829 C A CD40 Silent p.I204I 0.15 TCGA-GV-A40G-01 20 61943386 61943386 C T COL20A1 Silent p.S594S 0.25 TCGA-GV-A40G-01 21 27141436 27141436 G A GABPA Missense_Mutation p.E420K 0.27 deleterious(0.01) possibly_damaging(0.561) TCGA-GV-A40G-01 21 43321769 43321769 G A C2CD2 Missense_Mutation p.R508W 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-GV-A40G-01 22 30659956 30659956 G A OSM Silent p.H225H 0.03 TCGA-GV-A40G-01 22 32330184 32330184 G A C22orf24 Silent p.L135L 0.77 TCGA-GV-A40G-01 2 113832410 113832410 C A IL1F10 Missense_Mutation p.P77T 0.24 tolerated(0.23) probably_damaging(1) TCGA-GV-A40G-01 2 133542251 133542251 C A NCKAP5 Missense_Mutation p.E711D 0.21 tolerated(0.08) possibly_damaging(0.848) TCGA-GV-A40G-01 2 165350941 165350941 T C GRB14 Silent p.P492P 0.47 TCGA-GV-A40G-01 2 167108339 167108339 T C SCN9A Silent p.G1125G 0.20 TCGA-GV-A40G-01 2 179425858 179425858 T C TTN Missense_Mutation p.D28334G 0.20 TCGA-GV-A40G-01 2 179634499 179634499 G A TTN Nonsense_Mutation p.Q2937* 0.21 TCGA-GV-A40G-01 2 1983318 1983318 C A MYT1L Nonsense_Mutation p.E22* 0.29 TCGA-GV-A40G-01 2 1983319 1983319 C T MYT1L Silent p.V21V 0.29 TCGA-GV-A40G-01 2 206872144 206872144 C T INO80D Silent p.L594L 0.05 TCGA-GV-A40G-01 2 207170653 207170653 G A ZDBF2 Missense_Mutation p.M467I 0.33 tolerated(0.15) benign(0.091) TCGA-GV-A40G-01 2 207636741 207636741 G T FASTKD2 Missense_Mutation p.D372Y 0.05 deleterious(0.04) possibly_damaging(0.711) TCGA-GV-A40G-01 2 233391291 233391291 G C CHRND Missense_Mutation p.E35D 0.12 tolerated(0.29) probably_damaging(0.989) TCGA-GV-A40G-01 2 234878872 234878872 G A TRPM8 Silent p.K719K 0.06 TCGA-GV-A40G-01 2 25457044 25457044 T C DNMT3A 3'UTR 0.20 TCGA-GV-A40G-01 2 71060168 71060168 C T CD207 Missense_Mutation p.V194M 0.60 tolerated(1) benign(0.002) TCGA-GV-A40G-01 2 74598210 74598210 C T DCTN1 Missense_Mutation p.E247K 0.03 deleterious(0) probably_damaging(0.998) TCGA-GV-A40G-01 2 74756363 74756363 G A AUP1 Nonsense_Mutation p.Q79* 0.24 TCGA-GV-A40G-01 2 74757097 74757097 G A HTRA2 5'UTR 0.16 TCGA-GV-A40G-01 2 74757942 74757942 G C HTRA2 Missense_Mutation p.Q235H 0.25 tolerated(0.32) possibly_damaging(0.617) TCGA-GV-A40G-01 2 97368447 97368447 C T LMAN2L 3'Flank 0.26 TCGA-GV-A40G-01 2 99463239 99463239 T C KIAA1211L Missense_Mutation p.I9V 0.46 tolerated(0.58) benign(0.068) TCGA-GV-A40G-01 3 147128662 147128662 C A ZIC1 Missense_Mutation p.H255N 0.39 deleterious(0) probably_damaging(0.998) TCGA-GV-A40G-01 3 157815938 157815938 C T SHOX2 Missense_Mutation p.D316N 0.13 tolerated(0.53) unknown(0) TCGA-GV-A40G-01 3 193166040 193166040 A C ATP13A4 Missense_Mutation p.L703V 0.18 deleterious(0) benign(0.319) TCGA-GV-A40G-01 3 25637964 25637964 C G RARB Missense_Mutation p.L402V 0.24 deleterious(0) probably_damaging(0.957) TCGA-GV-A40G-01 3 28562491 28562491 G A ZCWPW2 Missense_Mutation p.E265K 0.20 deleterious(0) probably_damaging(0.95) TCGA-GV-A40G-01 3 44491019 44491019 A G ZNF445 Missense_Mutation p.V306A 0.40 tolerated(0.23) benign(0.153) TCGA-GV-A40G-01 3 6903549 6903549 G A GRM7 Silent p.G158G 0.16 TCGA-GV-A40G-01 3 93611935 93611935 C T PROS1 Missense_Mutation p.D333N 0.13 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 4 126370861 126370861 C G FAT4 Missense_Mutation p.T2897R 0.05 possibly_damaging(0.826) TCGA-GV-A40G-01 4 151168844 151168844 C T DCLK2 Missense_Mutation p.S640F 0.36 deleterious(0) probably_damaging(0.935) TCGA-GV-A40G-01 4 152203350 152203350 G A PRSS48 Missense_Mutation p.G89D 0.07 tolerated(0.91) benign(0.002) TCGA-GV-A40G-01 4 166254772 166254772 C G MSMO1 Missense_Mutation p.Q84E 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-GV-A40G-01 4 166263045 166263045 C A MSMO1 Missense_Mutation p.Q277K 0.45 tolerated(0.2) possibly_damaging(0.73) TCGA-GV-A40G-01 4 186112120 186112120 T C KIAA1430 Silent p.P77P 0.35 TCGA-GV-A40G-01 4 42895368 42895368 C T GRXCR1 Silent p.L29L 0.32 TCGA-GV-A40G-01 4 85634393 85634393 C T WDFY3 Splice_Site p.X2654_splice 0.22 TCGA-GV-A40G-01 5 123977030 123977030 G T ZNF608 Missense_Mutation p.F1455L 0.47 tolerated(0.06) probably_damaging(0.984) TCGA-GV-A40G-01 5 133909338 133909338 A G JADE2 Missense_Mutation p.R480G 0.73 deleterious(0.01) benign(0.432) TCGA-GV-A40G-01 5 140229572 140229572 C T PCDHA9 Missense_Mutation p.R498W 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GV-A40G-01 5 151202511 151202511 C G GLRA1 Missense_Mutation p.G366A 0.39 tolerated(0.81) benign(0.005) TCGA-GV-A40G-01 5 172517872 172517872 A G CREBRF Silent p.E230E 0.70 TCGA-GV-A40G-01 5 35874558 35874558 G A IL7R Missense_Mutation p.M238I 0.22 tolerated(0.49) benign(0.001) TCGA-GV-A40G-01 5 37371058 37371058 C T NUP155 Missense_Mutation p.A8T 0.11 tolerated_low_confidence(0.32) benign(0.007) TCGA-GV-A40G-01 5 42689121 42689121 G T GHR Missense_Mutation p.R89M 0.13 deleterious(0) probably_damaging(0.996) TCGA-GV-A40G-01 6 107001424 107001424 G A AIM1 Missense_Mutation p.C1448Y 0.09 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 6 10730942 10730942 C T TMEM14C 3'UTR 0.30 TCGA-GV-A40G-01 6 110713945 110713946 TC - DDO 3'UTR 0.33 TCGA-GV-A40G-01 6 129649559 129649559 T C LAMA2 Splice_Site p.X1437_splice 0.05 TCGA-GV-A40G-01 6 142409489 142409489 G A NMBR Missense_Mutation p.R103C 0.84 deleterious(0.04) probably_damaging(0.99) TCGA-GV-A40G-01 6 152651705 152651705 G A SYNE1 Silent p.A4705A 0.74 TCGA-GV-A40G-01 6 3273582 3273582 C T SLC22A23 Missense_Mutation p.E590K 0.05 deleterious(0) possibly_damaging(0.801) TCGA-GV-A40G-01 6 34574587 34574587 C G C6orf106 Silent p.P202P 0.05 TCGA-GV-A40G-01 6 36334426 36334426 G A ETV7 Missense_Mutation p.P341L 0.26 deleterious(0) probably_damaging(0.995) TCGA-GV-A40G-01 6 38723820 38723820 A G DNAH8 Missense_Mutation p.N277D 0.30 probably_damaging(0.99) TCGA-GV-A40G-01 7 100731304 100731304 G A TRIM56 Silent p.E237E 0.25 TCGA-GV-A40G-01 7 107546721 107546721 G A DLD Missense_Mutation p.D198N 0.24 deleterious(0.02) benign(0.128) TCGA-GV-A40G-01 7 116593824 116593824 G C ST7 Intron 0.61 TCGA-GV-A40G-01 7 143085644 143085644 C G ZYX Missense_Mutation p.Q403E 0.24 deleterious(0.02) possibly_damaging(0.526) TCGA-GV-A40G-01 7 149512268 149512268 G A SSPO RNA 0.25 TCGA-GV-A40G-01 7 27285924 27285924 G A EVX1 Silent p.S368S 0.60 TCGA-GV-A40G-01 7 32598622 32598622 G C AVL9 Missense_Mutation p.S254T 0.27 tolerated(0.6) benign(0.003) TCGA-GV-A40G-01 7 39379526 39379526 C T POU6F2 Missense_Mutation p.T266I 0.33 tolerated_low_confidence(0.05) unknown(0) TCGA-GV-A40G-01 7 73153094 73153094 G A ABHD11 Missense_Mutation p.R12C 0.19 tolerated_low_confidence(0.15) benign(0.011) TCGA-GV-A40G-01 7 93055890 93055890 G A CALCR Silent p.T435T 0.48 TCGA-GV-A40G-01 7 95442532 95442532 G A DYNC1I1 Nonsense_Mutation p.W83* 0.57 TCGA-GV-A40G-01 7 99997420 99997420 G A PILRA Missense_Mutation p.V268I 0.21 tolerated(0.09) benign(0.003) TCGA-GV-A40G-01 8 110457754 110457754 G A PKHD1L1 Missense_Mutation p.A1886T 0.16 tolerated(0.08) benign(0.013) TCGA-GV-A40G-01 8 117866640 117866640 C G RAD21 Missense_Mutation p.K335N 0.19 deleterious(0.02) possibly_damaging(0.451) TCGA-GV-A40G-01 8 131922042 131922042 C T ADCY8 Missense_Mutation p.G518S 0.54 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 8 142228784 142228784 C T SLC45A4 Missense_Mutation p.D268N 0.32 deleterious(0.03) possibly_damaging(0.772) TCGA-GV-A40G-01 8 144406198 144406198 G A TOP1MT Missense_Mutation p.R311W 0.56 deleterious(0) probably_damaging(0.998) TCGA-GV-A40G-01 8 2026821 2026821 A C MYOM2 Missense_Mutation p.E423D 0.66 deleterious(0.03) probably_damaging(0.957) TCGA-GV-A40G-01 8 69020396 69020396 C T PREX2 Missense_Mutation p.S923F 0.14 tolerated(0.05) benign(0.224) TCGA-GV-A40G-01 9 107531159 107531159 G A NIPSNAP3B Missense_Mutation p.R96Q 0.28 deleterious(0.03) possibly_damaging(0.832) TCGA-GV-A40G-01 9 113252013 113252013 G C SVEP1 Missense_Mutation p.P616R 0.31 probably_damaging(1) TCGA-GV-A40G-01 9 136137502 136137502 C T ABO Intron 0.29 TCGA-GV-A40G-01 9 136409600 136409600 C T ADAMTSL2 Silent p.L231L 0.45 TCGA-GV-A40G-01 9 137321028 137321028 G A RXRA Missense_Mutation p.G329R 0.34 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 9 139750013 139750013 G A MAMDC4 Silent p.P471P 0.23 TCGA-GV-A40G-01 9 34709232 34709232 C A CCL21 3'UTR 0.28 TCGA-GV-A40G-01 9 35811307 35811307 C T SPAG8 Missense_Mutation p.E246K 0.03 tolerated(0.6) benign(0.058) TCGA-GV-A40G-01 9 4793019 4793019 C T RCL1 5'UTR 0.30 TCGA-GV-A40G-01 X 107433641 107433641 T A COL4A6 Silent p.L470L 0.74 TCGA-GV-A40G-01 X 109919442 109919442 A T CHRDL1 3'UTR 0.76 TCGA-GV-A40G-01 X 2184836 2184836 C T DHRSX Missense_Mutation p.V181I 0.52 deleterious(0.03) possibly_damaging(0.595) TCGA-GV-A40G-01 X 2343295 2343295 C A DHRSX Missense_Mutation p.G54C 0.42 deleterious(0) probably_damaging(1) TCGA-GV-A40G-01 X 63413198 63413198 G A AMER1 5'UTR 0.46 TCGA-GV-A40G-01 X 69626162 69626162 C T KIF4A Silent p.T1010T 0.88 TCGA-GV-A6ZA-01 10 101590518 101590518 G T ABCC2 Missense_Mutation p.L931F 0.27 tolerated(0.26) possibly_damaging(0.548) TCGA-GV-A6ZA-01 10 102509528 102509528 C T PAX2 Silent p.L23L 0.44 TCGA-GV-A6ZA-01 10 104184263 104184263 C A CUEDC2 Missense_Mutation p.R91S 0.37 deleterious(0.01) benign(0.045) TCGA-GV-A6ZA-01 10 121600424 121600424 C G MCMBP Missense_Mutation p.L393F 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-GV-A6ZA-01 10 126682463 126682463 C G CTBP2 Missense_Mutation p.R831P 0.33 deleterious(0) possibly_damaging(0.652) TCGA-GV-A6ZA-01 10 13237154 13237154 C A MCM10 Missense_Mutation p.P621Q 0.46 tolerated(0.18) benign(0.026) TCGA-GV-A6ZA-01 10 14816390 14816390 C T FAM107B Silent p.R91R 0.20 TCGA-GV-A6ZA-01 10 15014683 15014683 C T MEIG1 3'UTR 0.39 TCGA-GV-A6ZA-01 10 15014686 15014686 C T MEIG1 3'UTR 0.47 TCGA-GV-A6ZA-01 10 16981117 16981117 G C CUBN Missense_Mutation p.H1860D 0.29 deleterious(0.05) possibly_damaging(0.67) TCGA-GV-A6ZA-01 10 17083112 17083112 T C CUBN Missense_Mutation p.T1313A 0.09 deleterious(0.01) possibly_damaging(0.841) TCGA-GV-A6ZA-01 10 26432477 26432477 C G MYO3A Missense_Mutation p.S788C 0.06 deleterious(0) possibly_damaging(0.616) TCGA-GV-A6ZA-01 10 43650804 43650804 G C CSGALNACT2 Missense_Mutation p.Q69H 0.39 tolerated(0.13) probably_damaging(0.914) TCGA-GV-A6ZA-01 10 6263667 6263667 C T PFKFB3 Missense_Mutation p.R348W 0.54 probably_damaging(0.991) TCGA-GV-A6ZA-01 10 75114497 75114497 C G TTC18 Missense_Mutation p.D20H 0.24 tolerated(0.06) probably_damaging(0.992) TCGA-GV-A6ZA-01 10 85908554 85908554 G C GHITM Missense_Mutation p.Q184H 0.36 tolerated(0.19) benign(0.003) TCGA-GV-A6ZA-01 11 108198371 108198371 G C ATM Splice_Site p.X2326_splice 0.76 TCGA-GV-A6ZA-01 11 108253773 108253773 G A C11orf65 Missense_Mutation p.T306M 0.22 tolerated_low_confidence(0.06) benign(0.082) TCGA-GV-A6ZA-01 11 117074163 117074163 C T TAGLN Silent p.I107I 0.74 TCGA-GV-A6ZA-01 11 118245669 118245669 C T UBE4A Missense_Mutation p.S399F 0.79 deleterious(0) probably_damaging(0.994) TCGA-GV-A6ZA-01 11 119210204 119210204 G A C1QTNF5 Missense_Mutation p.S190L 0.70 deleterious(0.01) probably_damaging(0.947) TCGA-GV-A6ZA-01 11 120096409 120096409 G C OAF Missense_Mutation p.E91Q 0.68 deleterious(0) probably_damaging(0.999) TCGA-GV-A6ZA-01 11 128842463 128842463 G A ARHGAP32 Missense_Mutation p.T1299M 0.30 tolerated_low_confidence(0.07) benign(0.006) TCGA-GV-A6ZA-01 11 212627 212627 C G RIC8A Missense_Mutation p.L366V 0.53 deleterious(0) probably_damaging(0.989) TCGA-GV-A6ZA-01 11 30928138 30928138 C G DCDC1 Missense_Mutation p.K1351N 0.36 deleterious(0.05) benign(0) TCGA-GV-A6ZA-01 11 33628221 33628221 A G KIAA1549L Silent p.L1341L 0.17 TCGA-GV-A6ZA-01 11 34472552 34472552 G C CAT Missense_Mutation p.E86Q 0.26 deleterious(0.04) probably_damaging(1) TCGA-GV-A6ZA-01 11 4407483 4407483 C G TRIM21 Missense_Mutation p.E255Q 0.55 deleterious(0.04) possibly_damaging(0.717) TCGA-GV-A6ZA-01 11 46840016 46840016 C T CKAP5 Silent p.L32L 0.33 TCGA-GV-A6ZA-01 11 48285684 48285684 C T OR4X1 Missense_Mutation p.S91F 0.12 deleterious(0.01) possibly_damaging(0.862) TCGA-GV-A6ZA-01 11 55065554 55065554 G A TRIM51HP RNA 0.37 TCGA-GV-A6ZA-01 11 55761547 55761547 G C OR5F1 Missense_Mutation p.F185L 0.41 tolerated(1) benign(0.019) TCGA-GV-A6ZA-01 11 56020566 56020566 T G OR5T3 Silent p.A297A 0.09 TCGA-GV-A6ZA-01 11 58206862 58206862 A C OR5B12 Missense_Mutation p.F255V 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.79) TCGA-GV-A6ZA-01 11 58722355 58722355 G T GLYATL1 Missense_Mutation p.R131I 0.33 tolerated(0.23) benign(0.002) TCGA-GV-A6ZA-01 11 61563388 61563388 C A FEN1 Missense_Mutation p.F185L 0.36 deleterious(0.02) possibly_damaging(0.856) TCGA-GV-A6ZA-01 11 66392422 66392422 C T RBM14 Missense_Mutation p.R359C 0.33 deleterious_low_confidence(0) benign(0.002) TCGA-GV-A6ZA-01 11 66627386 66627386 G A LRFN4 Missense_Mutation p.G543E 0.31 tolerated(0.31) benign(0.306) TCGA-GV-A6ZA-01 11 73102207 73102207 G A RELT Silent p.G102G 0.44 TCGA-GV-A6ZA-01 11 77386225 77386225 C T RSF1 Missense_Mutation p.D1140N 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-GV-A6ZA-01 11 85409114 85409114 C G SYTL2 Missense_Mutation p.K1125N 0.50 deleterious(0.03) possibly_damaging(0.8) TCGA-GV-A6ZA-01 11 93886740 93886740 C G PANX1 Missense_Mutation p.Q89E 0.47 tolerated(0.18) possibly_damaging(0.534) TCGA-GV-A6ZA-01 12 10584777 10584777 G A KLRC2 Missense_Mutation p.S171L 0.30 tolerated(0.09) benign(0.093) TCGA-GV-A6ZA-01 12 110977737 110977737 C G PPTC7 Missense_Mutation p.D206H 0.37 deleterious(0.01) benign(0.285) TCGA-GV-A6ZA-01 12 11150472 11150472 C T TAS2R20 Translation_Start_Site p.M1? 0.12 deleterious(0.02) possibly_damaging(0.718) TCGA-GV-A6ZA-01 12 111758222 111758222 G A CUX2 Silent p.V803V 0.15 TCGA-GV-A6ZA-01 12 117698415 117698415 C T NOS1 Splice_Site p.X741_splice 0.39 TCGA-GV-A6ZA-01 12 123646746 123646746 C T MPHOSPH9 Missense_Mutation p.D865N 0.39 deleterious(0.05) probably_damaging(0.969) TCGA-GV-A6ZA-01 12 124421829 124421829 T A CCDC92 Missense_Mutation p.I258F 0.41 deleterious(0.04) benign(0.332) TCGA-GV-A6ZA-01 12 124496663 124496663 C T ZNF664 5'UTR 0.52 TCGA-GV-A6ZA-01 12 12940689 12940689 G A APOLD1 3'UTR 0.40 TCGA-GV-A6ZA-01 12 133219267 133219267 G C POLE Missense_Mutation p.L1593V 0.25 tolerated(0.44) benign(0.013) TCGA-GV-A6ZA-01 12 16048298 16048298 G A STRAP Nonsense_Mutation p.W169* 0.47 TCGA-GV-A6ZA-01 12 21918736 21918736 C T KCNJ8 Missense_Mutation p.R399Q 0.38 deleterious(0.03) benign(0.199) TCGA-GV-A6ZA-01 12 26731681 26731681 G A ITPR2 Missense_Mutation p.S1532L 0.45 tolerated(0.05) possibly_damaging(0.558) TCGA-GV-A6ZA-01 12 29639257 29639257 G C OVCH1 Nonsense_Mutation p.S306* 0.51 TCGA-GV-A6ZA-01 12 34179442 34179442 G C ALG10 Missense_Mutation p.W338C 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-GV-A6ZA-01 12 40076742 40076742 A C C12orf40 Missense_Mutation p.N339T 0.11 deleterious(0.02) possibly_damaging(0.506) TCGA-GV-A6ZA-01 12 430212 430212 G C KDM5A Silent p.V830V 0.42 TCGA-GV-A6ZA-01 12 49415628 49415628 C G KMT2D Missense_Mutation p.E5517Q 0.37 unknown(0) TCGA-GV-A6ZA-01 12 49420164 49420164 C T KMT2D Silent p.Q5195Q 0.37 TCGA-GV-A6ZA-01 12 5020659 5020659 G A KCNA1 Missense_Mutation p.V39M 0.16 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 12 56082010 56082010 C G ITGA7 Missense_Mutation p.L1015F 0.30 deleterious(0.01) benign(0.275) TCGA-GV-A6ZA-01 12 56826818 56826818 G A TIMELESS Nonsense_Mutation p.Q175* 0.47 TCGA-GV-A6ZA-01 12 6138561 6138561 C T VWF Missense_Mutation p.V972M 0.45 deleterious(0.03) probably_damaging(0.993) TCGA-GV-A6ZA-01 12 7177747 7177747 G A C1S Missense_Mutation p.G620E 0.38 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 12 862951 862951 A G WNK1 Missense_Mutation p.T74A 0.26 deleterious(0.01) unknown(0) TCGA-GV-A6ZA-01 12 98993627 98993634 TGTTACTA - SLC25A3 Intron 0.31 TCGA-GV-A6ZA-01 13 111546523 111546523 G A ANKRD10 Intron 0.30 TCGA-GV-A6ZA-01 13 115070348 115070348 G A UPF3A Missense_Mutation p.E463K 0.32 tolerated(0.34) benign(0.052) TCGA-GV-A6ZA-01 13 20235942 20235942 G C MPHOSPH8 Missense_Mutation p.K632N 0.13 tolerated(0.06) benign(0.356) TCGA-GV-A6ZA-01 13 21720984 21720984 G C SAP18 Missense_Mutation p.E94Q 0.40 deleterious(0.03) benign(0.152) TCGA-GV-A6ZA-01 13 25000722 25000722 C G PARP4 Missense_Mutation p.E1621Q 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-GV-A6ZA-01 14 100795326 100795326 C T SLC25A47 Silent p.F197F 0.61 TCGA-GV-A6ZA-01 14 107199024 107199024 A G IGHV3-72 Missense_Mutation p.F89L 0.19 deleterious_low_confidence(0.03) benign(0.024) TCGA-GV-A6ZA-01 14 23548034 23548034 C G ACIN1 Missense_Mutation p.E726Q 0.42 benign(0.146) TCGA-GV-A6ZA-01 14 45605331 45605331 C T FANCM Nonsense_Mutation p.Q33* 0.53 TCGA-GV-A6ZA-01 14 52481892 52481892 C T NID2 Missense_Mutation p.D1044N 0.34 deleterious(0) probably_damaging(0.995) TCGA-GV-A6ZA-01 14 56078992 56078992 G A KTN1 Missense_Mutation p.D76N 0.24 deleterious(0.02) probably_damaging(1) TCGA-GV-A6ZA-01 14 70826257 70826257 G C COX16 Silent p.L16L 0.41 TCGA-GV-A6ZA-01 14 73958902 73958902 G C HEATR4 Intron 0.24 TCGA-GV-A6ZA-01 14 73959267 73959267 G C HEATR4 Intron 0.21 TCGA-GV-A6ZA-01 14 75563826 75563826 C T NEK9 Missense_Mutation p.G717E 0.12 deleterious(0.04) probably_damaging(0.94) TCGA-GV-A6ZA-01 14 88946208 88946208 G C PTPN21 Missense_Mutation p.P523A 0.23 tolerated(0.54) probably_damaging(0.998) TCGA-GV-A6ZA-01 14 94770777 94770777 G A SERPINA6 Missense_Mutation p.A399V 0.22 tolerated(0.05) benign(0.012) TCGA-GV-A6ZA-01 15 22383370 22383370 A T OR4N4 Missense_Mutation p.R300W 0.24 deleterious(0) possibly_damaging(0.812) TCGA-GV-A6ZA-01 15 28000513 28000513 C G OCA2 3'UTR 0.39 TCGA-GV-A6ZA-01 15 32930029 32930029 A G ARHGAP11A Missense_Mutation p.K1019E 0.40 tolerated(0.07) possibly_damaging(0.505) TCGA-GV-A6ZA-01 15 43783907 43783907 G T TP53BP1 Missense_Mutation p.Q111K 0.52 deleterious(0.02) probably_damaging(0.968) TCGA-GV-A6ZA-01 15 50757299 50757299 G C USP8 Missense_Mutation p.L199F 0.54 deleterious(0.01) probably_damaging(0.997) TCGA-GV-A6ZA-01 15 59465948 59465948 G C MYO1E Missense_Mutation p.F777L 0.60 deleterious(0.03) possibly_damaging(0.827) TCGA-GV-A6ZA-01 15 65962153 65962153 G C DENND4A Missense_Mutation p.S1583C 0.27 deleterious(0.02) possibly_damaging(0.682) TCGA-GV-A6ZA-01 15 89402382 89402382 C T ACAN Missense_Mutation p.P2189L 0.16 tolerated(0.24) benign(0.401) TCGA-GV-A6ZA-01 15 93499758 93499761 TCTT - CHD2 Frame_Shift_Del p.S627Yfs*6 0.22 TCGA-GV-A6ZA-01 16 11016058 11016058 G A CIITA Missense_Mutation p.E1062K 0.26 tolerated(0.28) benign(0.021) TCGA-GV-A6ZA-01 16 1254341 1254341 C T CACNA1H Silent p.L778L 0.60 TCGA-GV-A6ZA-01 16 17211624 17211624 C T XYLT1 Silent p.L812L 0.24 TCGA-GV-A6ZA-01 16 19027867 19027867 G C TMC7 Missense_Mutation p.R136P 0.22 deleterious(0.05) benign(0.179) TCGA-GV-A6ZA-01 16 19543791 19543791 T C CCP110 Silent p.D65D 0.12 TCGA-GV-A6ZA-01 16 23691520 23691520 G C PLK1 Missense_Mutation p.R175P 0.21 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 16 27503786 27503786 G A GTF3C1 Silent p.C1008C 0.14 TCGA-GV-A6ZA-01 16 28167402 28167402 C T XPO6 Missense_Mutation p.D364N 0.09 tolerated(0.11) benign(0.051) TCGA-GV-A6ZA-01 16 29858532 29858532 G A MVP Silent p.Q760Q 0.40 TCGA-GV-A6ZA-01 16 29858617 29858617 G A MVP Missense_Mutation p.E789K 0.42 tolerated(0.11) benign(0.025) TCGA-GV-A6ZA-01 16 3632496 3632496 C T SLX4 Silent p.E1784E 0.28 TCGA-GV-A6ZA-01 16 50655557 50655557 G A NKD1 Missense_Mutation p.E102K 0.28 tolerated(0.16) benign(0.248) TCGA-GV-A6ZA-01 16 53675292 53675292 T C RPGRIP1L Missense_Mutation p.I927V 0.34 tolerated(0.87) benign(0.001) TCGA-GV-A6ZA-01 16 57965711 57965711 C A CNGB1 Nonsense_Mutation p.E482* 0.46 TCGA-GV-A6ZA-01 16 57965759 57965759 C G CNGB1 Missense_Mutation p.E466Q 0.42 deleterious(0.03) probably_damaging(0.942) TCGA-GV-A6ZA-01 16 58621779 58621779 G A CNOT1 Nonsense_Mutation p.Q72* 0.24 TCGA-GV-A6ZA-01 16 68598350 68598350 G C ZFP90 Missense_Mutation p.E554Q 0.27 tolerated(0.08) probably_damaging(0.968) TCGA-GV-A6ZA-01 16 69189854 69189854 C G CIRH1A Silent p.L415L 0.40 TCGA-GV-A6ZA-01 16 89764479 89764479 C T SPATA2L Missense_Mutation p.E180K 0.44 deleterious(0.02) possibly_damaging(0.818) TCGA-GV-A6ZA-01 16 90038126 90038126 G C CENPBD1 Missense_Mutation p.Q69E 0.33 tolerated(0.09) benign(0.031) TCGA-GV-A6ZA-01 17 1703675 1703675 C T SMYD4 Missense_Mutation p.G338E 0.56 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 17 3119726 3119726 T A OR1A1 Missense_Mutation p.V271E 0.07 deleterious(0) probably_damaging(0.94) TCGA-GV-A6ZA-01 17 33769076 33769076 G C SLFN13 Silent p.L476L 0.17 TCGA-GV-A6ZA-01 17 36453116 36453116 C T MRPL45 5'UTR 0.14 TCGA-GV-A6ZA-01 17 3724615 3724615 G A C17orf85 Missense_Mutation p.R310W 0.47 deleterious(0) probably_damaging(0.99) TCGA-GV-A6ZA-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.86 deleterious(0) probably_damaging(0.994) TCGA-GV-A6ZA-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.85 deleterious(0.05) benign(0.006) TCGA-GV-A6ZA-01 17 41246489 41246489 C G BRCA1 Missense_Mutation p.W353C 0.44 tolerated(0.19) benign(0.061) TCGA-GV-A6ZA-01 17 41246641 41246641 C T BRCA1 Missense_Mutation p.E303K 0.51 deleterious(0.01) probably_damaging(0.991) TCGA-GV-A6ZA-01 17 45785837 45785837 G A TBKBP1 Missense_Mutation p.R317K 0.34 tolerated(0.21) possibly_damaging(0.626) TCGA-GV-A6ZA-01 17 45886728 45886728 G A OSBPL7 Missense_Mutation p.S666F 0.61 deleterious(0.02) probably_damaging(0.917) TCGA-GV-A6ZA-01 17 46052994 46052994 G A CDK5RAP3 Missense_Mutation p.A210T 0.81 deleterious(0.03) probably_damaging(0.992) TCGA-GV-A6ZA-01 17 54933973 54933973 G C DGKE Missense_Mutation p.R400T 0.50 deleterious(0) probably_damaging(0.999) TCGA-GV-A6ZA-01 17 59958452 59958452 C T INTS2 Missense_Mutation p.E732K 0.35 tolerated(0.38) benign(0.012) TCGA-GV-A6ZA-01 17 61432412 61432412 C G TANC2 Missense_Mutation p.S674C 0.48 deleterious(0) probably_damaging(0.94) TCGA-GV-A6ZA-01 17 61972636 61972636 C G CSH1 Intron 0.39 TCGA-GV-A6ZA-01 17 65907743 65907743 C T BPTF Missense_Mutation p.S1248F 0.38 possibly_damaging(0.543) TCGA-GV-A6ZA-01 17 66881391 66881391 G A ABCA8 Silent p.F1125F 0.43 TCGA-GV-A6ZA-01 17 73780919 73780919 G C UNK 5'UTR 0.43 TCGA-GV-A6ZA-01 17 73824970 73824970 C T UNC13D Missense_Mutation p.E1017K 0.53 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 17 74392341 74392341 C T UBE2O Missense_Mutation p.E893K 0.42 tolerated(0.07) benign(0.119) TCGA-GV-A6ZA-01 17 7490869 7490869 G C MPDU1 Nonstop_Mutation p.*248Yext*41 0.18 TCGA-GV-A6ZA-01 18 12724647 12724647 C G PSMG2 Intron 0.52 TCGA-GV-A6ZA-01 18 21121272 21121272 C G NPC1 Missense_Mutation p.E791Q 0.40 deleterious(0.04) possibly_damaging(0.854) TCGA-GV-A6ZA-01 18 21453023 21453023 G A LAMA3 Intron 0.39 TCGA-GV-A6ZA-01 18 21662956 21662956 G A TTC39C Missense_Mutation p.E299K 0.20 tolerated(0.07) possibly_damaging(0.799) TCGA-GV-A6ZA-01 18 21743154 21743154 C T OSBPL1A Missense_Mutation p.D948N 0.38 tolerated(0.07) benign(0.443) TCGA-GV-A6ZA-01 18 25591842 25591842 A G CDH2 Missense_Mutation p.S172P 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-GV-A6ZA-01 18 29055783 29055783 A T DSG3 Nonsense_Mutation p.K854* 0.10 TCGA-GV-A6ZA-01 18 29488970 29488970 C T TRAPPC8 Missense_Mutation p.G290D 0.35 tolerated(0.18) possibly_damaging(0.555) TCGA-GV-A6ZA-01 18 31318980 31318980 G C ASXL3 Missense_Mutation p.E538Q 0.50 benign(0.432) TCGA-GV-A6ZA-01 18 3193940 3193940 G A MYOM1 Silent p.L103L 0.38 TCGA-GV-A6ZA-01 18 56203590 56203590 C G ALPK2 Missense_Mutation p.D1277H 0.28 tolerated(0.07) benign(0.048) TCGA-GV-A6ZA-01 18 56586641 56586641 G C ZNF532 Missense_Mutation p.K374N 0.37 deleterious(0) probably_damaging(0.999) TCGA-GV-A6ZA-01 18 56587581 56587581 G A ZNF532 Missense_Mutation p.D688N 0.25 tolerated(0.05) possibly_damaging(0.753) TCGA-GV-A6ZA-01 18 61322903 61322903 G A SERPINB3 Silent p.F387F 0.29 TCGA-GV-A6ZA-01 19 10624484 10624484 G C S1PR5 3'UTR 0.45 TCGA-GV-A6ZA-01 19 11303664 11303664 C G KANK2 Silent p.L364L 0.49 TCGA-GV-A6ZA-01 19 12984773 12984773 G A MAST1 Missense_Mutation p.E1268K 0.41 deleterious(0) probably_damaging(0.991) TCGA-GV-A6ZA-01 19 12995676 12995676 G C KLF1 3'UTR 0.50 TCGA-GV-A6ZA-01 19 15838884 15838884 G C OR10H2 Missense_Mutation p.E11Q 0.43 deleterious(0.02) benign(0.024) TCGA-GV-A6ZA-01 19 15839447 15839447 G A OR10H2 Silent p.L198L 0.47 TCGA-GV-A6ZA-01 19 15839534 15839534 G C OR10H2 Missense_Mutation p.L227F 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-GV-A6ZA-01 19 15839667 15839667 G A OR10H2 Missense_Mutation p.D272N 0.40 tolerated(0.14) benign(0.068) TCGA-GV-A6ZA-01 19 15839675 15839675 G T OR10H2 Silent p.L274L 0.41 TCGA-GV-A6ZA-01 19 16987313 16987313 G A SIN3B Missense_Mutation p.R960H 0.36 tolerated(0.09) possibly_damaging(0.512) TCGA-GV-A6ZA-01 19 17836839 17836839 G A MAP1S Missense_Mutation p.E216K 0.39 deleterious(0.01) possibly_damaging(0.616) TCGA-GV-A6ZA-01 19 39076592 39076592 G T RYR1 Missense_Mutation p.A4940S 0.32 unknown(0) TCGA-GV-A6ZA-01 19 39760652 39760652 G C IFNL2 Nonstop_Mutation p.*201Sext*13 0.36 TCGA-GV-A6ZA-01 19 40579979 40579979 G T ZNF780A 3'UTR 0.32 TCGA-GV-A6ZA-01 19 40580260 40580260 G C ZNF780A 3'UTR 0.47 TCGA-GV-A6ZA-01 19 40581811 40581811 G A ZNF780A Missense_Mutation p.L181F 0.46 tolerated(0.09) probably_damaging(1) TCGA-GV-A6ZA-01 19 4282968 4282968 G A SHD Missense_Mutation p.M133I 0.38 tolerated(1) benign(0) TCGA-GV-A6ZA-01 19 43097969 43097969 C G CEACAM8 Missense_Mutation p.E50Q 0.39 deleterious(0) possibly_damaging(0.887) TCGA-GV-A6ZA-01 19 44500292 44500292 C T ZNF155 Missense_Mutation p.H106Y 0.33 tolerated(0.07) possibly_damaging(0.767) TCGA-GV-A6ZA-01 19 49207042 49207042 C G FUT2 Missense_Mutation p.L277V 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-GV-A6ZA-01 19 57640431 57640431 G C USP29 Missense_Mutation p.D130H 0.19 tolerated(0.1) possibly_damaging(0.843) TCGA-GV-A6ZA-01 19 58005132 58005132 G T ZNF419 Nonsense_Mutation p.E404* 0.38 TCGA-GV-A6ZA-01 19 58370723 58370723 C T ZNF587 Nonsense_Mutation p.Q315* 0.43 TCGA-GV-A6ZA-01 19 59027768 59027768 G A ZBTB45 Missense_Mutation p.H425Y 0.43 deleterious(0) probably_damaging(0.952) TCGA-GV-A6ZA-01 19 651705 651705 G A RNF126 Missense_Mutation p.P117S 0.50 tolerated(0.81) benign(0.009) TCGA-GV-A6ZA-01 19 7601418 7601418 C G PNPLA6 Silent p.L142L 0.42 TCGA-GV-A6ZA-01 19 9071052 9071052 G T MUC16 Missense_Mutation p.S5465Y 0.45 unknown(0) TCGA-GV-A6ZA-01 19 9204616 9204616 C T OR1M1 Silent p.G232G 0.27 TCGA-GV-A6ZA-01 1 102269856 102269856 C T OLFM3 Missense_Mutation p.G439S 0.40 tolerated(0.13) probably_damaging(1) TCGA-GV-A6ZA-01 1 108679443 108679443 G A SLC25A24 Silent p.S422S 0.06 TCGA-GV-A6ZA-01 1 109159034 109159034 G C FAM102B Missense_Mutation p.D146H 0.45 deleterious(0) probably_damaging(0.979) TCGA-GV-A6ZA-01 1 110031540 110031540 G A ATXN7L2 Silent p.L285L 0.44 TCGA-GV-A6ZA-01 1 115600188 115600188 A G TSPAN2 Silent p.P162P 0.39 TCGA-GV-A6ZA-01 1 144864199 144864199 C A PDE4DIP Nonsense_Mutation p.E1966* 0.11 TCGA-GV-A6ZA-01 1 145440746 145440746 G C TXNIP Missense_Mutation p.E316Q 0.25 tolerated(0.06) benign(0.374) TCGA-GV-A6ZA-01 1 149915893 149915893 G C OTUD7B Missense_Mutation p.Q799E 0.61 deleterious_low_confidence(0) benign(0.324) TCGA-GV-A6ZA-01 1 149915902 149915902 G A OTUD7B Missense_Mutation p.P796S 0.56 tolerated_low_confidence(0.32) benign(0.009) TCGA-GV-A6ZA-01 1 151107746 151107746 G A SEMA6C Silent p.I491I 0.28 TCGA-GV-A6ZA-01 1 151157991 151157991 C T VPS72 Missense_Mutation p.G126S 0.10 tolerated(0.7) benign(0.067) TCGA-GV-A6ZA-01 1 151196878 151196878 C G PIP5K1A Nonsense_Mutation p.S51* 0.42 TCGA-GV-A6ZA-01 1 155340340 155340340 C T ASH1L Missense_Mutation p.R2214Q 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GV-A6ZA-01 1 158644181 158644181 C T SPTA1 Missense_Mutation p.D430N 0.42 tolerated(0.48) benign(0.007) TCGA-GV-A6ZA-01 1 158669765 158669765 A G OR6K2 Silent p.I226I 0.11 TCGA-GV-A6ZA-01 1 159505755 159505755 A C OR10J5 Missense_Mutation p.L15V 0.07 tolerated(0.51) benign(0.434) TCGA-GV-A6ZA-01 1 162337129 162337129 G C NOS1AP Missense_Mutation p.E465Q 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GV-A6ZA-01 1 165877125 165877125 C T UCK2 3'UTR 0.42 TCGA-GV-A6ZA-01 1 17046559 17046559 C T ESPNP RNA 0.19 TCGA-GV-A6ZA-01 1 172635061 172635061 C T FASLG Missense_Mutation p.L251F 0.45 tolerated(0.05) possibly_damaging(0.558) TCGA-GV-A6ZA-01 1 176680989 176680989 C G PAPPA2 Missense_Mutation p.P1224A 0.16 tolerated(0.5) benign(0.011) TCGA-GV-A6ZA-01 1 183920172 183920172 C G COLGALT2 Missense_Mutation p.E369Q 0.17 tolerated(0.41) benign(0.023) TCGA-GV-A6ZA-01 1 186934573 186934573 C T PLA2G4A Silent p.L538L 0.25 TCGA-GV-A6ZA-01 1 197128497 197128497 G C ZBTB41 Missense_Mutation p.H908D 0.19 deleterious_low_confidence(0.01) benign(0.111) TCGA-GV-A6ZA-01 1 211192478 211192478 A C KCNH1 Missense_Mutation p.L227V 0.11 deleterious(0) probably_damaging(0.998) TCGA-GV-A6ZA-01 1 23688863 23688863 C T ZNF436 Missense_Mutation p.E338K 0.34 tolerated(0.06) possibly_damaging(0.585) TCGA-GV-A6ZA-01 1 237806719 237806719 C T RYR2 Silent p.I2438I 0.20 TCGA-GV-A6ZA-01 1 241767766 241767766 G C OPN3 Silent p.L163L 0.23 TCGA-GV-A6ZA-01 1 248201927 248201927 G A OR2L2 Missense_Mutation p.D120N 0.18 deleterious(0) benign(0.417) TCGA-GV-A6ZA-01 1 27059273 27059273 C G ARID1A Missense_Mutation p.S637C 0.33 unknown(0) TCGA-GV-A6ZA-01 1 43004857 43004857 C G CCDC30 Nonsense_Mutation p.S44* 0.24 TCGA-GV-A6ZA-01 1 45347306 45347306 C G EIF2B3 Missense_Mutation p.K254N 0.15 tolerated(0.26) benign(0.003) TCGA-GV-A6ZA-01 1 52703924 52703924 C T ZFYVE9 Missense_Mutation p.P279S 0.30 tolerated_low_confidence(0.24) benign(0.006) TCGA-GV-A6ZA-01 1 57333329 57333329 G A C8A Missense_Mutation p.S42N 0.33 tolerated(0.09) benign(0.046) TCGA-GV-A6ZA-01 1 62190663 62190663 C T TM2D1 Missense_Mutation p.E106K 0.32 tolerated(0.1) benign(0.399) TCGA-GV-A6ZA-01 1 62190664 62190664 C T TM2D1 Silent p.E105E 0.32 TCGA-GV-A6ZA-01 1 6313848 6313848 G A GPR153 Missense_Mutation p.S239F 0.31 deleterious(0) probably_damaging(0.999) TCGA-GV-A6ZA-01 1 68173350 68173350 C A GNG12 Missense_Mutation p.S7I 0.41 tolerated(0.13) benign(0.121) TCGA-GV-A6ZA-01 1 78191394 78191394 A G USP33 Missense_Mutation p.S428P 0.40 tolerated(0.23) benign(0.029) TCGA-GV-A6ZA-01 1 78383953 78383953 G A NEXN Missense_Mutation p.E148K 0.37 tolerated_low_confidence(0.1) benign(0.06) TCGA-GV-A6ZA-01 1 89290027 89290027 G C PKN2 Missense_Mutation p.E793Q 0.34 tolerated(0.25) possibly_damaging(0.816) TCGA-GV-A6ZA-01 1 91781371 91781371 C T HFM1 Splice_Site p.X1047_splice 0.12 TCGA-GV-A6ZA-01 20 23614618 23614618 G A CST3 Nonsense_Mutation p.Q126* 0.36 TCGA-GV-A6ZA-01 20 23614619 23614619 G A CST3 Silent p.F125F 0.33 TCGA-GV-A6ZA-01 20 31022277 31022277 C T ASXL1 Nonsense_Mutation p.Q588* 0.14 TCGA-GV-A6ZA-01 20 3735142 3735142 G A C20orf27 Missense_Mutation p.S134L 0.08 tolerated(0.73) benign(0.002) TCGA-GV-A6ZA-01 20 43248998 43248998 C G ADA Missense_Mutation p.K340N 0.26 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 20 45355615 45355615 C T SLC2A10 Silent p.L467L 0.30 TCGA-GV-A6ZA-01 20 47602073 47602073 C T ARFGEF2 Silent p.F733F 0.50 TCGA-GV-A6ZA-01 20 49227396 49227396 G A FAM65C Silent p.I136I 0.43 TCGA-GV-A6ZA-01 20 50225113 50225113 C G ATP9A Missense_Mutation p.D897H 0.40 deleterious(0) probably_damaging(0.95) TCGA-GV-A6ZA-01 20 57466824 57466824 G A GNAS Intron 0.23 TCGA-GV-A6ZA-01 20 57485930 57485930 A T GNAS 3'UTR 0.46 TCGA-GV-A6ZA-01 20 58381187 58381187 C T PHACTR3 Silent p.F422F 0.45 TCGA-GV-A6ZA-01 20 60704907 60704907 C T LSM14B Missense_Mutation p.S165F 0.44 deleterious(0.01) possibly_damaging(0.836) TCGA-GV-A6ZA-01 20 60868937 60868937 C T OSBPL2 Silent p.I479I 0.39 TCGA-GV-A6ZA-01 20 61528239 61528239 G A DIDO1 Silent p.L566L 0.12 TCGA-GV-A6ZA-01 20 62172233 62172233 C T SRMS Missense_Mutation p.E469K 0.59 tolerated(0.44) benign(0.029) TCGA-GV-A6ZA-01 20 62192537 62192537 G A HELZ2 Silent p.S2348S 0.21 TCGA-GV-A6ZA-01 21 34022503 34022503 C G SYNJ1 Missense_Mutation p.D1049H 0.18 deleterious(0) probably_damaging(0.97) TCGA-GV-A6ZA-01 21 37759967 37759967 C G CHAF1B Silent p.T66T 0.16 TCGA-GV-A6ZA-01 21 38593804 38593804 G C DSCR3 3'Flank 0.36 TCGA-GV-A6ZA-01 21 43164063 43164063 C T RIPK4 Missense_Mutation p.E392K 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-GV-A6ZA-01 21 45506827 45506827 A C TRAPPC10 Missense_Mutation p.Y842S 0.27 tolerated(0.37) benign(0.001) TCGA-GV-A6ZA-01 21 45506830 45506830 C G TRAPPC10 Missense_Mutation p.S843C 0.25 deleterious(0) probably_damaging(0.91) TCGA-GV-A6ZA-01 21 45789113 45789113 G A TRPM2 Missense_Mutation p.E220K 0.62 tolerated(0.09) benign(0.285) TCGA-GV-A6ZA-01 21 45789214 45789214 G C TRPM2 Silent p.L253L 0.76 TCGA-GV-A6ZA-01 21 47611825 47611825 C G LSS Missense_Mutation p.E679D 0.31 tolerated(0.57) benign(0) TCGA-GV-A6ZA-01 22 19968925 19968925 G A ARVCF Silent p.A235A 0.67 TCGA-GV-A6ZA-01 22 22300424 22300424 C A PPM1F 5'UTR 0.11 TCGA-GV-A6ZA-01 22 32487639 32487639 C T SLC5A1 Silent p.L390L 0.47 TCGA-GV-A6ZA-01 22 37398085 37398085 C T TEX33 Silent p.K94K 0.36 TCGA-GV-A6ZA-01 22 37414315 37414315 G C TST Missense_Mutation p.F153L 0.38 deleterious(0.01) possibly_damaging(0.817) TCGA-GV-A6ZA-01 2 103124628 103124628 G A SLC9A4 Missense_Mutation p.R430Q 0.27 deleterious(0) probably_damaging(0.991) TCGA-GV-A6ZA-01 2 135745339 135745339 G A MAP3K19 Missense_Mutation p.S368L 0.40 tolerated(0.16) benign(0.015) TCGA-GV-A6ZA-01 2 152342363 152342363 G A NEB Nonsense_Mutation p.Q8497* 0.45 TCGA-GV-A6ZA-01 2 163099878 163099878 G C FAP 5'UTR 0.39 TCGA-GV-A6ZA-01 2 166011106 166011106 T G SCN3A Silent p.S412S 0.05 TCGA-GV-A6ZA-01 2 1680817 1680817 C T PXDN Splice_Site p.X244_splice 0.46 TCGA-GV-A6ZA-01 2 168102225 168102225 C T XIRP2 Silent p.V1441V 0.38 TCGA-GV-A6ZA-01 2 175666440 175666440 T C CHN1 Silent p.L401L 0.59 TCGA-GV-A6ZA-01 2 179403700 179403700 C T TTN Missense_Mutation p.E32988K 0.46 TCGA-GV-A6ZA-01 2 179440180 179440180 C T TTN Missense_Mutation p.G23560D 0.49 TCGA-GV-A6ZA-01 2 179442902 179442902 G C TTN Silent p.L22780L 0.34 TCGA-GV-A6ZA-01 2 179578870 179578870 T A TTN Missense_Mutation p.I8839L 0.28 TCGA-GV-A6ZA-01 2 187455198 187455198 G A ITGAV Missense_Mutation p.E45K 0.32 tolerated(0.3) benign(0.052) TCGA-GV-A6ZA-01 2 191851594 191851594 C T STAT1 Missense_Mutation p.E403K 0.41 deleterious(0) probably_damaging(0.994) TCGA-GV-A6ZA-01 2 207006699 207006699 C G NDUFS1 Missense_Mutation p.E424Q 0.40 deleterious(0) probably_damaging(0.99) TCGA-GV-A6ZA-01 2 216214475 216214475 C G ATIC 3'UTR 0.60 TCGA-GV-A6ZA-01 2 220073618 220073618 C T ZFAND2B Intron 0.57 TCGA-GV-A6ZA-01 2 220419306 220419306 G A OBSL1 Missense_Mutation p.S1589L 0.47 tolerated(0.05) benign(0.018) TCGA-GV-A6ZA-01 2 233245451 233245451 C T ALPP Silent p.F328F 0.38 TCGA-GV-A6ZA-01 2 237405986 237405986 G T IQCA1 Silent p.I52I 0.53 TCGA-GV-A6ZA-01 2 24255804 24255804 G C C2orf44 Missense_Mutation p.L611V 0.47 tolerated(0.3) benign(0.001) TCGA-GV-A6ZA-01 2 24507670 24507670 G C ITSN2 Missense_Mutation p.L636V 0.36 tolerated(0.12) unknown(0) TCGA-GV-A6ZA-01 2 24930593 24930593 C G NCOA1 Missense_Mutation p.L752V 0.40 deleterious(0) probably_damaging(0.996) TCGA-GV-A6ZA-01 2 27460930 27460930 G A CAD Missense_Mutation p.E1579K 0.06 tolerated(0.26) benign(0.124) TCGA-GV-A6ZA-01 2 27592052 27592052 G C EIF2B4 Missense_Mutation p.S100W 0.18 deleterious(0) possibly_damaging(0.692) TCGA-GV-A6ZA-01 2 39042665 39042665 C G DHX57 Missense_Mutation p.E1202Q 0.42 deleterious(0.03) possibly_damaging(0.639) TCGA-GV-A6ZA-01 2 48809385 48809385 G T STON1-GTF2A1L Missense_Mutation p.G538V 0.41 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 2 55908017 55908017 C T PNPT1 Missense_Mutation p.E164K 0.36 tolerated(0.07) benign(0.003) TCGA-GV-A6ZA-01 2 55920907 55920907 C T PNPT1 Missense_Mutation p.D18N 0.24 tolerated_low_confidence(0.59) benign(0.009) TCGA-GV-A6ZA-01 2 61192574 61192574 C T PUS10 Missense_Mutation p.E221K 0.32 tolerated(0.67) benign(0.003) TCGA-GV-A6ZA-01 2 63822608 63822608 G A MDH1 Missense_Mutation p.G70S 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-GV-A6ZA-01 2 65561832 65561832 C T SPRED2 Missense_Mutation p.D94N 0.18 tolerated(0.24) probably_damaging(0.956) TCGA-GV-A6ZA-01 2 68765094 68765094 G C APLF Missense_Mutation p.E299Q 0.37 tolerated(0.19) benign(0.063) TCGA-GV-A6ZA-01 2 68882132 68882132 C T PROKR1 Silent p.T202T 0.17 TCGA-GV-A6ZA-01 2 71305477 71305477 G C NAGK Missense_Mutation p.E338Q 0.37 tolerated(0.11) benign(0.011) TCGA-GV-A6ZA-01 2 73717912 73717912 G C ALMS1 Missense_Mutation p.M2941I 0.40 benign(0.39) TCGA-GV-A6ZA-01 2 73899538 73899538 G T ALMS1P RNA 0.32 TCGA-GV-A6ZA-01 2 74654302 74654302 C T RTKN Missense_Mutation p.E452K 0.49 deleterious(0) probably_damaging(0.935) TCGA-GV-A6ZA-01 2 74655512 74655513 - T RTKN Frame_Shift_Ins p.M324Dfs*23 0.21 TCGA-GV-A6ZA-01 2 84804494 84804494 A T DNAH6 Nonsense_Mutation p.R680* 0.28 TCGA-GV-A6ZA-01 2 96071301 96071301 G A FAHD2A Intron 0.28 TCGA-GV-A6ZA-01 2 9663424 9663424 G C ADAM17 Nonsense_Mutation p.S266* 0.35 TCGA-GV-A6ZA-01 2 96852508 96852509 TT - STARD7 Frame_Shift_Del p.N358Rfs*10 0.18 TCGA-GV-A6ZA-01 2 96874015 96874015 G A STARD7 Missense_Mutation p.S53L 0.41 tolerated(0.06) benign(0.002) TCGA-GV-A6ZA-01 3 101038479 101038479 C T IMPG2 Missense_Mutation p.E95K 0.59 deleterious(0) possibly_damaging(0.713) TCGA-GV-A6ZA-01 3 127399294 127399294 C T ABTB1 Silent p.L471L 0.40 TCGA-GV-A6ZA-01 3 142234275 142234275 C G ATR Missense_Mutation p.E1489Q 0.52 tolerated(0.12) benign(0.006) TCGA-GV-A6ZA-01 3 151599329 151599329 A C SUCNR1 Missense_Mutation p.E333A 0.08 deleterious_low_confidence(0.02) benign(0.002) TCGA-GV-A6ZA-01 3 157081453 157081453 G C VEPH1 Missense_Mutation p.L479V 0.12 tolerated(0.19) benign(0.005) TCGA-GV-A6ZA-01 3 158431619 158431619 G A RARRES1 Silent p.H102H 0.04 TCGA-GV-A6ZA-01 3 160786656 160786656 G A PPM1L Missense_Mutation p.R265Q 0.18 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 3 183643450 183643450 G C ABCC5 Missense_Mutation p.Q1369E 0.39 deleterious(0.03) probably_damaging(0.987) TCGA-GV-A6ZA-01 3 193232644 193232644 C T ATP13A4 Missense_Mutation p.R26Q 0.06 tolerated(0.25) benign(0.058) TCGA-GV-A6ZA-01 3 193380641 193380641 G C OPA1 Missense_Mutation p.E833Q 0.41 tolerated(0.1) benign(0.016) TCGA-GV-A6ZA-01 3 33427032 33427032 C T FBXL2 Missense_Mutation p.P402S 0.13 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 3 33427033 33427033 C T FBXL2 Missense_Mutation p.P402L 0.13 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 3 48310365 48310365 G A ZNF589 3'UTR 0.53 TCGA-GV-A6ZA-01 3 48310420 48310420 G A ZNF589 3'UTR 0.38 TCGA-GV-A6ZA-01 3 48608565 48608565 G A COL7A1 Missense_Mutation p.S2378F 0.43 probably_damaging(0.949) TCGA-GV-A6ZA-01 3 48624958 48624958 G A COL7A1 Missense_Mutation p.R963C 0.21 unknown(0) TCGA-GV-A6ZA-01 3 50367938 50367938 C G RASSF1 3'UTR 0.58 TCGA-GV-A6ZA-01 3 50602918 50602918 C G C3orf18 Silent p.V71V 0.25 TCGA-GV-A6ZA-01 3 51979111 51979111 G A PARP3 Silent p.T251T 0.51 TCGA-GV-A6ZA-01 3 52457196 52457196 G A PHF7 Missense_Mutation p.E337K 0.19 deleterious_low_confidence(0.01) benign(0.014) TCGA-GV-A6ZA-01 3 52786001 52786001 C T NEK4 Missense_Mutation p.E439K 0.19 deleterious(0.03) benign(0.006) TCGA-GV-A6ZA-01 3 52786178 52786178 C G NEK4 Missense_Mutation p.D380H 0.25 deleterious(0) benign(0.036) TCGA-GV-A6ZA-01 3 6903016 6903016 C T GRM7 5'UTR 0.75 TCGA-GV-A6ZA-01 4 113539667 113539667 C T C4orf21 Missense_Mutation p.E511K 0.14 deleterious(0.01) benign(0.118) TCGA-GV-A6ZA-01 4 148463743 148463743 G C EDNRA Silent p.R419R 0.22 TCGA-GV-A6ZA-01 4 151153947 151153947 C T DCLK2 Silent p.I528I 0.21 TCGA-GV-A6ZA-01 4 155508742 155508742 T G FGA Missense_Mutation p.K144N 0.09 deleterious(0) possibly_damaging(0.758) TCGA-GV-A6ZA-01 4 185631326 185631326 C T CENPU Missense_Mutation p.D233N 0.20 tolerated(0.12) benign(0.202) TCGA-GV-A6ZA-01 4 187525004 187525008 TATTC - FAT1 Frame_Shift_Del p.E3558Lfs*17 0.60 TCGA-GV-A6ZA-01 4 42558001 42558001 T G ATP8A1 Missense_Mutation p.N466T 0.12 deleterious(0.04) probably_damaging(0.995) TCGA-GV-A6ZA-01 4 46930377 46930377 A C GABRA4 Silent p.P510P 0.04 TCGA-GV-A6ZA-01 4 57180913 57180913 G C KIAA1211 Missense_Mutation p.W415C 0.57 tolerated(0.06) unknown(0) TCGA-GV-A6ZA-01 4 76928584 76928584 G C CXCL9 Missense_Mutation p.L7V 0.55 tolerated(0.76) benign(0.01) TCGA-GV-A6ZA-01 4 89618627 89618627 C G NAP1L5 Missense_Mutation p.K93N 0.26 tolerated(0.07) benign(0.285) TCGA-GV-A6ZA-01 5 102494915 102494915 G C PPIP5K2 Missense_Mutation p.M601I 0.29 tolerated(0.05) benign(0.234) TCGA-GV-A6ZA-01 5 109191003 109191003 C T MAN2A1 Missense_Mutation p.H1047Y 0.20 deleterious(0.05) benign(0.094) TCGA-GV-A6ZA-01 5 132216777 132216777 G A AFF4 Missense_Mutation p.R1156C 0.38 deleterious(0) probably_damaging(0.995) TCGA-GV-A6ZA-01 5 134041031 134041031 C G SEC24A Missense_Mutation p.R819G 0.56 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 5 139202308 139202308 C G PSD2 Intron 0.26 TCGA-GV-A6ZA-01 5 140166500 140166500 C T PCDHA1 Missense_Mutation p.H209Y 0.26 tolerated_low_confidence(0.21) benign(0.005) TCGA-GV-A6ZA-01 5 141050914 141050914 G C ARAP3 Silent p.L636L 0.52 TCGA-GV-A6ZA-01 5 1441513 1441513 C T SLC6A3 Missense_Mutation p.G127R 0.51 deleterious(0) probably_damaging(0.996) TCGA-GV-A6ZA-01 5 173534469 173534469 C T NSG2 Silent p.V159V 0.45 TCGA-GV-A6ZA-01 5 180166810 180166810 G A OR2Y1 Silent p.I83I 0.32 TCGA-GV-A6ZA-01 5 89923141 89923141 C A GPR98 Silent p.P262P 0.40 TCGA-GV-A6ZA-01 5 89986740 89986740 G T GPR98 Missense_Mutation p.G2278V 0.25 probably_damaging(0.972) TCGA-GV-A6ZA-01 5 94878950 94878950 G A TTC37 Nonsense_Mutation p.Q58* 0.53 TCGA-GV-A6ZA-01 6 112463393 112463393 C T LAMA4 Missense_Mutation p.M865I 0.32 tolerated(0.71) benign(0.001) TCGA-GV-A6ZA-01 6 132910309 132910309 C G TAAR5 Missense_Mutation p.D173H 0.31 deleterious(0.01) possibly_damaging(0.815) TCGA-GV-A6ZA-01 6 143749574 143749574 C G ADAT2 3'UTR 0.35 TCGA-GV-A6ZA-01 6 143749800 143749800 C T ADAT2 Missense_Mutation p.E161K 0.73 tolerated(0.1) benign(0.027) TCGA-GV-A6ZA-01 6 152702360 152702360 C T SYNE1 Nonsense_Mutation p.W2930* 0.59 TCGA-GV-A6ZA-01 6 155451529 155451529 C T TIAM2 Missense_Mutation p.S391L 0.38 deleterious(0.01) probably_damaging(0.916) TCGA-GV-A6ZA-01 6 165752791 165752791 C T PDE10A Silent p.K718K 0.54 TCGA-GV-A6ZA-01 6 26157185 26157185 G C HIST1H1E Silent p.A189A 0.11 TCGA-GV-A6ZA-01 6 28116270 28116270 G A ZKSCAN8 Missense_Mutation p.E29K 0.34 deleterious(0.03) probably_damaging(0.989) TCGA-GV-A6ZA-01 6 29523823 29523823 G C UBD Nonsense_Mutation p.S111* 0.15 TCGA-GV-A6ZA-01 6 31615465 31615465 C G BAG6 Missense_Mutation p.E237Q 0.40 tolerated(0.4) probably_damaging(0.968) TCGA-GV-A6ZA-01 6 33245181 33245181 C T B3GALT4 5'UTR 0.15 TCGA-GV-A6ZA-01 6 33653872 33653872 G A ITPR3 Missense_Mutation p.V1904I 0.07 tolerated(0.07) benign(0.17) TCGA-GV-A6ZA-01 6 35278344 35278344 C G DEF6 Missense_Mutation p.Q116E 0.15 tolerated(0.48) benign(0.005) TCGA-GV-A6ZA-01 6 43012601 43012601 C A CUL7 Nonsense_Mutation p.E1105* 0.51 TCGA-GV-A6ZA-01 6 56357812 56357812 G C DST Missense_Mutation p.Q4201E 0.36 probably_damaging(0.931) TCGA-GV-A6ZA-01 6 85446793 85446793 G A TBX18 Silent p.F478F 0.37 TCGA-GV-A6ZA-01 6 87968359 87968359 C T ZNF292 Missense_Mutation p.S1671L 0.17 deleterious_low_confidence(0.01) benign(0.357) TCGA-GV-A6ZA-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.63 deleterious(0) possibly_damaging(0.79) TCGA-GV-A6ZA-01 7 100677343 100677343 C G MUC17 Missense_Mutation p.I882M 0.43 unknown(0) TCGA-GV-A6ZA-01 7 102136592 102136592 G A RASA4B Silent p.L356L 0.11 TCGA-GV-A6ZA-01 7 127238539 127238539 G A FSCN3 Silent p.T337T 0.20 TCGA-GV-A6ZA-01 7 1488389 1488389 G A MICALL2 Silent p.R67R 0.07 TCGA-GV-A6ZA-01 7 150696139 150696139 G A NOS3 Missense_Mutation p.E308K 0.39 deleterious(0) probably_damaging(0.985) TCGA-GV-A6ZA-01 7 151810446 151810446 C T GALNT11 Missense_Mutation p.S399F 0.37 deleterious(0) probably_damaging(0.999) TCGA-GV-A6ZA-01 7 156480813 156480813 G A LMBR1 Missense_Mutation p.S433F 0.35 tolerated(0.25) possibly_damaging(0.798) TCGA-GV-A6ZA-01 7 16640310 16640310 G C ANKMY2 3'UTR 0.29 TCGA-GV-A6ZA-01 7 20198032 20198032 G C MACC1 Nonsense_Mutation p.S651* 0.44 TCGA-GV-A6ZA-01 7 20825272 20825272 G A SP8 Missense_Mutation p.S55L 0.57 tolerated(0.45) benign(0.013) TCGA-GV-A6ZA-01 7 21908542 21908542 G A DNAH11 Missense_Mutation p.G3974D 0.23 probably_damaging(1) TCGA-GV-A6ZA-01 7 26224844 26224844 C G NFE2L3 Missense_Mutation p.S509C 0.15 deleterious(0.02) possibly_damaging(0.847) TCGA-GV-A6ZA-01 7 30662010 30662010 G A GARS Silent p.V515V 0.43 TCGA-GV-A6ZA-01 7 43484793 43484793 C T HECW1 Silent p.D674D 0.10 TCGA-GV-A6ZA-01 7 65419225 65419225 T G VKORC1L1 Missense_Mutation p.Y157D 0.19 deleterious(0) probably_damaging(0.997) TCGA-GV-A6ZA-01 7 72717949 72717949 C T NSUN5 Missense_Mutation p.R340Q 0.19 tolerated(0.16) benign(0.107) TCGA-GV-A6ZA-01 7 72891240 72891240 G A BAZ1B Nonsense_Mutation p.Q851* 0.42 TCGA-GV-A6ZA-01 7 93516175 93516175 C T TFPI2 Missense_Mutation p.R222H 0.49 tolerated(0.39) benign(0.05) TCGA-GV-A6ZA-01 7 97823392 97823392 G A LMTK2 Silent p.L1205L 0.43 TCGA-GV-A6ZA-01 7 99459343 99459343 G C CYP3A43 Missense_Mutation p.K378N 0.18 deleterious(0) benign(0.019) TCGA-GV-A6ZA-01 7 99459391 99459391 G A CYP3A43 Silent p.V394V 0.19 TCGA-GV-A6ZA-01 7 99697346 99697346 G A MCM7 Silent p.L48L 0.34 TCGA-GV-A6ZA-01 8 11637248 11637248 G A NEIL2 Missense_Mutation p.G94R 0.09 tolerated(0.24) benign(0.027) TCGA-GV-A6ZA-01 8 133645132 133645132 G C LRRC6 Missense_Mutation p.I169M 0.86 deleterious(0.03) possibly_damaging(0.529) TCGA-GV-A6ZA-01 8 139144865 139144865 A C FAM135B Missense_Mutation p.L1398V 0.09 deleterious(0.02) possibly_damaging(0.898) TCGA-GV-A6ZA-01 8 144876114 144876114 C T SCRIB Missense_Mutation p.G1289R 0.13 benign(0.021) TCGA-GV-A6ZA-01 8 35583866 35583866 G A UNC5D Silent p.E500E 0.24 TCGA-GV-A6ZA-01 9 131386709 131386709 G A SPTAN1 Missense_Mutation p.E1979K 0.75 deleterious(0) possibly_damaging(0.559) TCGA-GV-A6ZA-01 9 131386754 131386754 G T SPTAN1 Nonsense_Mutation p.E1994* 0.87 TCGA-GV-A6ZA-01 9 19360356 19360356 C T DENND4C Missense_Mutation p.H1710Y 0.78 tolerated(1) benign(0.012) TCGA-GV-A6ZA-01 9 2083369 2083369 G A SMARCA2 Missense_Mutation p.E791K 0.72 possibly_damaging(0.621) TCGA-GV-A6ZA-01 9 33917052 33917052 G C UBE2R2 Missense_Mutation p.K178N 0.29 deleterious(0.03) benign(0.261) TCGA-GV-A6ZA-01 9 71855004 71855004 C A TJP2 Missense_Mutation p.S867Y 0.56 deleterious(0) probably_damaging(0.996) TCGA-GV-A6ZA-01 9 74481648 74481648 C T ABHD17B Intron 0.81 TCGA-GV-A6ZA-01 9 95782677 95782677 G A FGD3 Missense_Mutation p.E489K 0.78 tolerated(0.06) probably_damaging(0.998) TCGA-GV-A6ZA-01 9 96859902 96859902 G C PTPDC1 Missense_Mutation p.D350H 0.25 deleterious(0) probably_damaging(0.973) TCGA-GV-A6ZA-01 X 110391027 110391027 G C PAK3 Missense_Mutation p.K149N 0.52 deleterious(0.01) probably_damaging(1) TCGA-GV-A6ZA-01 X 144905670 144905670 C T SLITRK2 Missense_Mutation p.A576V 0.88 tolerated(0.67) benign(0.001) TCGA-GV-A6ZA-01 X 153697267 153697267 G C PLXNA3 Silent p.L1463L 0.90 TCGA-GV-A6ZA-01 X 1761935 1761935 C G ASMT 3'UTR 0.11 TCGA-GV-A6ZA-01 X 19375797 19375797 T C PDHA1 Missense_Mutation p.Y325H 0.06 deleterious(0) probably_damaging(1) TCGA-GV-A6ZA-01 X 19983510 19983510 C T CXorf23 Missense_Mutation p.R309K 0.92 tolerated(0.07) possibly_damaging(0.495) TCGA-GV-A6ZA-01 X 31140029 31140029 A G DMD 3'UTR 0.07 TCGA-GV-A6ZA-01 X 44948997 44948997 G C KDM6A Missense_Mutation p.L1186F 1.00 deleterious(0) possibly_damaging(0.493) TCGA-GV-A6ZA-01 X 44949083 44949083 G C KDM6A Missense_Mutation p.G1215A 0.95 deleterious(0) probably_damaging(0.983) TCGA-GV-A6ZA-01 X 54491999 54491999 C G FGD1 Silent p.L507L 0.91 TCGA-GV-A6ZA-01 X 73965413 73965413 C G KIAA2022 Missense_Mutation p.E25Q 0.79 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-GV-A6ZA-01 X 92927609 92927609 G T NAP1L3 Missense_Mutation p.A232D 0.09 tolerated_low_confidence(0.08) benign(0) TCGA-GV-A6ZA-01 X 92927614 92927614 T C NAP1L3 Silent p.V230V 0.09 TCGA-GV-A6ZA-01 Y 4968272 4968272 G C PCDH11Y Missense_Mutation p.E885Q 0.89 deleterious(0.01) probably_damaging(0.991) TCGA-H4-A2HO-01 10 102296389 102296389 G A HIF1AN Silent p.Q133Q 0.25 TCGA-H4-A2HO-01 10 123687390 123687390 G A ATE1 Silent p.Y25Y 0.30 TCGA-H4-A2HO-01 10 124740004 124740004 C T PSTK Silent p.T3T 0.41 TCGA-H4-A2HO-01 10 126523363 126523363 C T FAM175B Silent p.D357D 0.22 TCGA-H4-A2HO-01 10 24762637 24762637 G A KIAA1217 Missense_Mutation p.E443K 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-H4-A2HO-01 10 34648183 34648183 C G PARD3 Missense_Mutation p.K653N 0.34 deleterious(0.01) possibly_damaging(0.517) TCGA-H4-A2HO-01 10 95372382 95372382 C T PDE6C 5'UTR 0.27 TCGA-H4-A2HO-01 11 111156561 111156561 C T C11orf53 Missense_Mutation p.H165Y 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-H4-A2HO-01 11 35640997 35640997 C T FJX1 Silent p.A271A 0.11 TCGA-H4-A2HO-01 11 56185064 56185064 G T OR5R1 Silent p.L215L 0.35 TCGA-H4-A2HO-01 11 57077076 57077076 C G TNKS1BP1 Missense_Mutation p.D1037H 0.30 deleterious(0.04) probably_damaging(0.912) TCGA-H4-A2HO-01 11 66468734 66468734 G T SPTBN2 Missense_Mutation p.L946M 0.29 tolerated(0.39) probably_damaging(0.995) TCGA-H4-A2HO-01 11 75438555 75438555 G A MOGAT2 Missense_Mutation p.G116R 0.08 deleterious(0.03) probably_damaging(0.982) TCGA-H4-A2HO-01 11 77605369 77605369 T G INTS4 Missense_Mutation p.E752A 0.38 deleterious(0.04) possibly_damaging(0.449) TCGA-H4-A2HO-01 12 111319049 111319049 G A CCDC63 Missense_Mutation p.V268I 0.27 tolerated(1) benign(0.003) TCGA-H4-A2HO-01 12 21757466 21757466 C G GYS2 Missense_Mutation p.E21Q 0.35 tolerated(0.06) benign(0.012) TCGA-H4-A2HO-01 12 43771260 43771260 G C ADAMTS20 Missense_Mutation p.Q1635E 0.31 tolerated(0.65) benign(0.003) TCGA-H4-A2HO-01 12 43886428 43886428 C A ADAMTS20 Missense_Mutation p.G319V 0.17 deleterious(0) probably_damaging(0.991) TCGA-H4-A2HO-01 12 81688723 81688723 A G PPFIA2 Missense_Mutation p.I939T 0.15 deleterious(0) possibly_damaging(0.768) TCGA-H4-A2HO-01 12 93149620 93149620 G A PLEKHG7 Silent p.V170V 0.28 TCGA-H4-A2HO-01 14 104641739 104641739 G A KIF26A Missense_Mutation p.A872T 0.37 tolerated(0.28) benign(0.349) TCGA-H4-A2HO-01 14 35036931 35036931 A T SNX6 Missense_Mutation p.N388K 0.31 deleterious(0) possibly_damaging(0.88) TCGA-H4-A2HO-01 14 64921557 64921557 C T MTHFD1 Silent p.S894S 0.28 TCGA-H4-A2HO-01 15 71302329 71302329 G C LRRC49 Missense_Mutation p.E536Q 0.34 deleterious(0.02) possibly_damaging(0.486) TCGA-H4-A2HO-01 15 75651976 75651976 C A MAN2C1 Missense_Mutation p.G645W 0.30 deleterious(0) probably_damaging(0.968) TCGA-H4-A2HO-01 16 46766260 46766260 C A MYLK3 Missense_Mutation p.G441V 0.27 tolerated(0.19) benign(0.045) TCGA-H4-A2HO-01 16 76481915 76481915 A - CNTNAP4 Frame_Shift_Del p.V158Wfs*19 0.24 TCGA-H4-A2HO-01 16 88098939 88098939 G T BANP Splice_Site p.X448_splice 0.29 TCGA-H4-A2HO-01 16 88745035 88745035 C T SNAI3 Missense_Mutation p.E234K 0.37 deleterious(0) possibly_damaging(0.874) TCGA-H4-A2HO-01 17 26821083 26821083 C T SLC13A2 Silent p.F431F 0.15 TCGA-H4-A2HO-01 17 36705305 36705305 G A SRCIN1 Missense_Mutation p.S1035L 0.36 deleterious(0.01) benign(0.172) TCGA-H4-A2HO-01 17 39883355 39883355 G A HAP1 Silent p.L439L 0.29 TCGA-H4-A2HO-01 17 40556948 40556949 GC - PTRF Frame_Shift_Del p.R310Lfs*114 0.28 TCGA-H4-A2HO-01 17 41002406 41002406 T - AOC2 3'UTR 0.29 TCGA-H4-A2HO-01 17 4445105 4445105 C A MYBBP1A Missense_Mutation p.G1057C 0.23 deleterious(0.04) possibly_damaging(0.831) TCGA-H4-A2HO-01 17 45447812 45447812 T C EFCAB13 Missense_Mutation p.M272T 0.29 tolerated(0.32) benign(0.092) TCGA-H4-A2HO-01 18 66678339 66678339 G A CCDC102B Missense_Mutation p.E478K 0.15 tolerated(0.6) benign(0.016) TCGA-H4-A2HO-01 19 10116237 10116237 G A COL5A3 Silent p.F197F 0.11 TCGA-H4-A2HO-01 19 15791063 15791063 C T CYP4F12 Missense_Mutation p.A118V 0.27 tolerated(0.11) benign(0.049) TCGA-H4-A2HO-01 19 18245741 18245741 G A MAST3 Missense_Mutation p.V578M 0.32 deleterious(0) probably_damaging(0.973) TCGA-H4-A2HO-01 19 37903795 37903795 G A ZNF569 Nonsense_Mutation p.Q589* 0.30 TCGA-H4-A2HO-01 19 38682830 38682830 G A SIPA1L3 Silent p.L1492L 0.32 TCGA-H4-A2HO-01 19 41188699 41188699 T C NUMBL Silent p.R111R 0.20 TCGA-H4-A2HO-01 19 48609779 48609779 C T PLA2G4C Silent p.K23K 0.31 TCGA-H4-A2HO-01 19 9014673 9014673 C G MUC16 Missense_Mutation p.D12768H 0.37 probably_damaging(0.982) TCGA-H4-A2HO-01 19 9017487 9017487 C G MUC16 Missense_Mutation p.D12613H 0.09 probably_damaging(0.918) TCGA-H4-A2HO-01 1 159275915 159275915 G A FCER1A Missense_Mutation p.E157K 0.17 deleterious(0.05) possibly_damaging(0.892) TCGA-H4-A2HO-01 1 173907942 173907942 G C RC3H1 Missense_Mutation p.L1107V 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-H4-A2HO-01 1 205273537 205273537 G A NUAK2 Nonsense_Mutation p.R310* 0.22 TCGA-H4-A2HO-01 1 228433250 228433250 G A OBSCN Silent p.L1298L 0.32 TCGA-H4-A2HO-01 1 231155696 231155696 G A FAM89A Silent p.H156H 0.28 TCGA-H4-A2HO-01 1 2409941 2409941 G A PLCH2 Missense_Mutation p.E24K 0.22 tolerated(0.11) benign(0.133) TCGA-H4-A2HO-01 1 24201432 24201432 G A CNR2 Missense_Mutation p.H226Y 0.33 tolerated(0.3) benign(0.186) TCGA-H4-A2HO-01 1 27102153 27102153 C - ARID1A Frame_Shift_Del p.L1694Cfs*9 0.32 TCGA-H4-A2HO-01 1 36636771 36636771 G A MAP7D1 Silent p.P82P 0.36 TCGA-H4-A2HO-01 1 91778984 91778984 T C HFM1 Missense_Mutation p.T1105A 0.41 tolerated(0.42) benign(0.001) TCGA-H4-A2HO-01 20 17594707 17594707 T G RRBP1 3'UTR 0.14 TCGA-H4-A2HO-01 20 2464291 2464291 C A ZNF343 Missense_Mutation p.C439F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-H4-A2HO-01 20 35064675 35064675 C A DLGAP4 Nonsense_Mutation p.S388* 0.33 TCGA-H4-A2HO-01 20 39316580 39316580 G A MAFB Missense_Mutation p.S304F 0.15 deleterious(0.01) benign(0.28) TCGA-H4-A2HO-01 20 57875894 57875894 C T EDN3 Silent p.F9F 0.32 TCGA-H4-A2HO-01 21 43522375 43522408 AACTGCTTCACGAGGTAAAGCCACAATGCAGACA - UMODL1 Splice_Site p.X429_splice 0.29 TCGA-H4-A2HO-01 22 16287731 16287731 G T POTEH Missense_Mutation p.S52Y 0.15 deleterious_low_confidence(0) unknown(0) TCGA-H4-A2HO-01 22 24224973 24224973 C T SLC2A11 Missense_Mutation p.R308W 0.09 deleterious(0.05) benign(0.004) TCGA-H4-A2HO-01 22 41833080 41833080 C T TOB2 Silent p.L90L 0.32 TCGA-H4-A2HO-01 2 131356306 131356306 G T CFC1 Missense_Mutation p.N52K 0.20 deleterious(0.01) possibly_damaging(0.655) TCGA-H4-A2HO-01 2 131803224 131803224 C G ARHGEF4 Intron 0.47 TCGA-H4-A2HO-01 2 15676631 15676631 C G NBAS Missense_Mutation p.L186F 0.27 deleterious(0) possibly_damaging(0.71) TCGA-H4-A2HO-01 2 198621229 198621229 A T BOLL Missense_Mutation p.Y230N 0.22 deleterious(0) probably_damaging(0.996) TCGA-H4-A2HO-01 2 20202935 20202935 C T MATN3 Silent p.K301K 0.31 TCGA-H4-A2HO-01 2 209189658 209189658 A T PIKFYVE Silent p.R785R 0.29 TCGA-H4-A2HO-01 2 220047272 220047272 C T FAM134A Missense_Mutation p.P518L 0.27 tolerated_low_confidence(0.07) possibly_damaging(0.462) TCGA-H4-A2HO-01 2 220412380 220412380 G A TMEM198 Missense_Mutation p.G107R 0.10 deleterious(0) probably_damaging(0.989) TCGA-H4-A2HO-01 2 242039054 242039054 C G MTERFD2 Missense_Mutation p.E93Q 0.34 tolerated(0.1) benign(0.406) TCGA-H4-A2HO-01 2 27259978 27259978 G T TMEM214 Missense_Mutation p.M314I 0.28 tolerated(0.49) benign(0) TCGA-H4-A2HO-01 2 27361074 27361074 G A C2orf53 Nonsense_Mutation p.Q42* 0.37 TCGA-H4-A2HO-01 2 37596833 37596834 - T QPCT Frame_Shift_Ins p.L244Ffs*32 0.27 TCGA-H4-A2HO-01 2 48873596 48873596 C - STON1-GTF2A1L Frame_Shift_Del p.L836Ffs*10 0.30 TCGA-H4-A2HO-01 2 54531938 54531938 A G ACYP2 Silent p.%3D 0.45 TCGA-H4-A2HO-01 2 60996024 60996024 G A PAPOLG Missense_Mutation p.R146K 0.44 deleterious(0.02) benign(0.301) TCGA-H4-A2HO-01 2 86332974 86332974 C G POLR1A 5'UTR 0.47 TCGA-H4-A2HO-01 2 88894996 88894996 A G EIF2AK3 Silent p.Y208Y 0.27 TCGA-H4-A2HO-01 3 112998756 112998756 G A BOC Silent p.S702S 0.36 TCGA-H4-A2HO-01 3 113753924 113753924 C T KIAA1407 Silent p.S222S 0.26 TCGA-H4-A2HO-01 3 130159267 130159267 G C COL6A5 Missense_Mutation p.E2029Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-H4-A2HO-01 3 156266662 156266662 T C SSR3 Intron 0.38 TCGA-H4-A2HO-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-H4-A2HO-01 3 44598778 44598778 G A ZKSCAN7 Missense_Mutation p.R80H 0.26 tolerated(0.61) benign(0.001) TCGA-H4-A2HO-01 3 50414954 50414954 C T CACNA2D2 Missense_Mutation p.V524M 0.31 deleterious(0) probably_damaging(1) TCGA-H4-A2HO-01 3 9032407 9032407 C T SRGAP3 Missense_Mutation p.C892Y 0.39 tolerated(1) possibly_damaging(0.459) TCGA-H4-A2HO-01 4 155506820 155506820 C G FGA Silent p.T587T 0.34 TCGA-H4-A2HO-01 4 166795194 166795194 G C TLL1 Missense_Mutation p.E46D 0.35 tolerated_low_confidence(0.21) benign(0.001) TCGA-H4-A2HO-01 4 88099702 88099702 G A KLHL8 Silent p.I341I 0.11 TCGA-H4-A2HO-01 5 113698493 113698493 C T KCNN2 Silent p.N7N 0.08 TCGA-H4-A2HO-01 5 13814929 13814929 C T DNAH5 Missense_Mutation p.G2339S 0.34 probably_damaging(0.959) TCGA-H4-A2HO-01 5 140215322 140215322 G A PCDHA7 Missense_Mutation p.A452T 0.34 deleterious_low_confidence(0.02) benign(0.425) TCGA-H4-A2HO-01 5 140215822 140215822 G C PCDHA7 Silent p.A618A 0.30 TCGA-H4-A2HO-01 5 140787909 140787909 T A PCDHGB6 Missense_Mutation p.V47E 0.25 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HO-01 5 176885084 176885084 T C DBN1 Missense_Mutation p.E586G 0.24 deleterious(0) probably_damaging(0.995) TCGA-H4-A2HO-01 5 54674240 54674240 G A SKIV2L2 Missense_Mutation p.G637S 0.25 tolerated(0.64) benign(0.014) TCGA-H4-A2HO-01 6 105225170 105225170 C T HACE1 Nonsense_Mutation p.W530* 0.32 TCGA-H4-A2HO-01 6 12124529 12124529 A C HIVEP1 Missense_Mutation p.T1501P 0.39 tolerated(0.46) benign(0.006) TCGA-H4-A2HO-01 6 26216573 26216573 C T HIST1H2BG Missense_Mutation p.R100H 0.15 deleterious_low_confidence(0.05) benign(0.011) TCGA-H4-A2HO-01 6 29694776 29694776 C A HLA-F Silent p.R385R 0.08 TCGA-H4-A2HO-01 6 31239532 31239532 C T HLA-C Missense_Mutation p.D63N 0.54 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-H4-A2HO-01 6 31785219 31785219 C T HSPA1A Silent p.I562I 0.44 TCGA-H4-A2HO-01 6 56469095 56469095 A C DST Intron 0.18 TCGA-H4-A2HO-01 6 74078418 74078418 G A OOEP 3'Flank 0.33 TCGA-H4-A2HO-01 6 93955099 93955099 T C EPHA7 Silent p.Q933Q 0.27 TCGA-H4-A2HO-01 7 111422965 111422965 C T DOCK4 Missense_Mutation p.M1171I 0.27 tolerated(0.48) benign(0) TCGA-H4-A2HO-01 7 120629550 120629550 G T CPED1 5'UTR 0.33 TCGA-H4-A2HO-01 7 28843821 28843821 G A CREB5 Silent p.L236L 0.44 TCGA-H4-A2HO-01 7 81620509 81620509 T A CACNA2D1 Silent p.T596T 0.27 TCGA-H4-A2HO-01 7 95157438 95157438 C T ASB4 Silent p.L267L 0.31 TCGA-H4-A2HO-01 8 56711557 56711557 G A TGS1 Missense_Mutation p.A543T 0.32 tolerated(0.99) benign(0.001) TCGA-H4-A2HO-01 8 67786681 67786681 T C MCMDC2 Missense_Mutation p.V72A 0.31 deleterious(0.02) benign(0.001) TCGA-H4-A2HO-01 9 116854858 116854858 G - KIF12 Frame_Shift_Del p.P416Hfs*28 0.14 TCGA-H4-A2HO-01 9 130438119 130438119 A T STXBP1 Missense_Mutation p.I383F 0.24 deleterious(0) probably_damaging(0.997) TCGA-H4-A2HO-01 9 131600026 131600026 C T CCBL1 Missense_Mutation p.G169S 0.09 tolerated(1) benign(0) TCGA-H4-A2HO-01 9 22008871 22008871 C G CDKN2B Missense_Mutation p.E28Q 0.32 tolerated(0.41) benign(0.013) TCGA-H4-A2HO-01 9 82267521 82267521 C - TLE4 Frame_Shift_Del p.Q136Sfs*13 0.29 TCGA-H4-A2HO-01 9 95219645 95219645 G T ASPN Nonsense_Mutation p.Y356* 0.34 TCGA-H4-A2HO-01 X 115584268 115584268 C T SLC6A14 Missense_Mutation p.L416F 0.71 deleterious(0) probably_damaging(0.928) TCGA-H4-A2HO-01 X 118109240 118109240 C G LONRF3 Nonsense_Mutation p.S166* 0.79 TCGA-H4-A2HO-01 X 53283763 53283763 A G IQSEC2 Silent p.S450S 0.46 TCGA-H4-A2HO-01 X 68060145 68060145 C T EFNB1 Missense_Mutation p.P230L 0.15 tolerated(0.19) benign(0.02) TCGA-H4-A2HQ-01 10 102057272 102057272 G A PKD2L1 Missense_Mutation p.P275S 0.38 tolerated(0.78) benign(0.026) TCGA-H4-A2HQ-01 10 125506529 125506529 G T CPXM2 Missense_Mutation p.N674K 0.10 tolerated(0.43) benign(0.206) TCGA-H4-A2HQ-01 10 49633979 49633979 C G MAPK8 Missense_Mutation p.P246R 0.41 tolerated(0.17) benign(0.004) TCGA-H4-A2HQ-01 10 55664967 55664967 G A PCDH15 Intron 0.72 TCGA-H4-A2HQ-01 10 67829226 67829226 C T CTNNA3 Missense_Mutation p.E667K 0.14 deleterious(0.03) unknown(0) TCGA-H4-A2HQ-01 10 70099239 70099239 C T HNRNPH3 Missense_Mutation p.S189L 0.29 tolerated(0.18) possibly_damaging(0.504) TCGA-H4-A2HQ-01 10 72520585 72520585 C T ADAMTS14 Silent p.L1219L 0.40 TCGA-H4-A2HQ-01 10 73567089 73567089 C T CDH23 Missense_Mutation p.T505I 0.44 tolerated(0.11) probably_damaging(0.979) TCGA-H4-A2HQ-01 10 97919098 97919098 G C ZNF518A RNA 0.11 TCGA-H4-A2HQ-01 10 98715326 98715326 G C LCOR Missense_Mutation p.E317Q 0.59 deleterious(0.03) possibly_damaging(0.727) TCGA-H4-A2HQ-01 10 99160977 99160977 C T RRP12 Silent p.S4S 0.26 TCGA-H4-A2HQ-01 11 104877904 104877904 C T CASP5 Silent p.L126L 0.31 TCGA-H4-A2HQ-01 11 110128893 110128893 T G RDX Silent p.L163L 0.22 TCGA-H4-A2HQ-01 11 116633707 116633707 G A BUD13 Missense_Mutation p.P200S 0.25 tolerated(0.82) benign(0.006) TCGA-H4-A2HQ-01 11 117052804 117052804 A T SIDT2 Missense_Mutation p.T167S 0.22 tolerated(1) benign(0.021) TCGA-H4-A2HQ-01 11 118881534 118881534 C T CCDC84 Silent p.I148I 0.14 TCGA-H4-A2HQ-01 11 121016422 121016422 G T TECTA Missense_Mutation p.Q1234H 0.21 tolerated(0.49) benign(0.006) TCGA-H4-A2HQ-01 11 122931008 122931008 A G HSPA8 Intron 0.15 TCGA-H4-A2HQ-01 11 12315578 12315578 G C MICALCL Missense_Mutation p.E200D 0.25 tolerated(0.06) benign(0.437) TCGA-H4-A2HQ-01 11 124294480 124294480 A G OR8B4 Silent p.C96C 0.18 TCGA-H4-A2HQ-01 11 132812893 132812893 C A OPCML Missense_Mutation p.R32L 0.62 deleterious(0.01) benign(0.198) TCGA-H4-A2HQ-01 11 20178727 20178727 C T DBX1 Silent p.G176G 0.31 TCGA-H4-A2HQ-01 11 319922 319922 C T IFITM3 Silent p.L106L 0.49 TCGA-H4-A2HQ-01 11 32955355 32955355 A G QSER1 Missense_Mutation p.N722D 0.26 tolerated(0.06) benign(0.08) TCGA-H4-A2HQ-01 11 36654908 36654908 C T C11orf74 Missense_Mutation p.H71Y 0.17 deleterious(0.02) possibly_damaging(0.804) TCGA-H4-A2HQ-01 11 46726955 46726955 C T ZNF408 Missense_Mutation p.H569Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-H4-A2HQ-01 11 47444417 47444417 C G PSMC3 Missense_Mutation p.K233N 0.04 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 11 47819815 47819815 C A NUP160 Splice_Site p.X998_splice 0.17 TCGA-H4-A2HQ-01 11 5474803 5474803 G T OR51I2 Missense_Mutation p.G29W 0.28 deleterious(0) probably_damaging(0.954) TCGA-H4-A2HQ-01 11 56043764 56043764 C A OR5T1 Missense_Mutation p.S217Y 0.17 tolerated(1) benign(0.183) TCGA-H4-A2HQ-01 11 57427259 57427259 G A CLP1 Missense_Mutation p.R104Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-H4-A2HQ-01 11 57569394 57569394 C G CTNND1 Silent p.V382V 0.14 TCGA-H4-A2HQ-01 11 57947582 57947582 C G OR9Q1 Missense_Mutation p.I222M 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-H4-A2HQ-01 11 60703933 60703933 C T TMEM132A Nonsense_Mutation p.Q877* 0.19 TCGA-H4-A2HQ-01 11 61511216 61511216 G A DAGLA Missense_Mutation p.R795H 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-H4-A2HQ-01 11 62124597 62124597 C A ASRGL1 Missense_Mutation p.Q158K 0.17 tolerated(0.91) benign(0.008) TCGA-H4-A2HQ-01 11 62364201 62364201 C T MTA2 Missense_Mutation p.E264K 0.32 deleterious(0.03) possibly_damaging(0.69) TCGA-H4-A2HQ-01 11 64522956 64522956 C A PYGM Missense_Mutation p.W245C 0.12 deleterious(0.01) probably_damaging(1) TCGA-H4-A2HQ-01 11 64557220 64557220 C T MAP4K2 Missense_Mutation p.R786Q 0.16 tolerated(0.05) possibly_damaging(0.85) TCGA-H4-A2HQ-01 11 64875784 64875784 G C VPS51 Missense_Mutation p.E281Q 0.15 tolerated(0.29) benign(0.022) TCGA-H4-A2HQ-01 11 65271197 65271197 C T MALAT1 RNA 0.14 TCGA-H4-A2HQ-01 11 66619932 66619932 G C PC Silent p.L601L 0.05 TCGA-H4-A2HQ-01 11 67223786 67223786 C T CABP4 Silent p.F138F 0.15 TCGA-H4-A2HQ-01 11 71726086 71726086 C A NUMA1 Missense_Mutation p.Q821H 0.11 possibly_damaging(0.89) TCGA-H4-A2HQ-01 11 71932735 71932735 G C FOLR2 Missense_Mutation p.E233Q 0.07 tolerated(0.24) benign(0.024) TCGA-H4-A2HQ-01 11 73431888 73431888 C G RAB6A Intron 0.10 TCGA-H4-A2HQ-01 11 74977287 74977287 G A ARRB1 Missense_Mutation p.R393C 0.15 deleterious(0) probably_damaging(0.995) TCGA-H4-A2HQ-01 11 7984932 7984932 C T NLRP10 Silent p.L37L 0.31 TCGA-H4-A2HQ-01 11 8132430 8132430 C A RIC3 Nonsense_Mutation p.E309* 0.31 TCGA-H4-A2HQ-01 11 92533025 92533025 C A FAT3 Missense_Mutation p.D2282E 0.21 probably_damaging(0.999) TCGA-H4-A2HQ-01 12 104096936 104096936 A G STAB2 Missense_Mutation p.N1242S 0.29 deleterious(0.01) possibly_damaging(0.721) TCGA-H4-A2HQ-01 12 105388290 105388290 C G C12orf45 Nonsense_Mutation p.S125* 0.40 TCGA-H4-A2HQ-01 12 108685556 108685556 G C CMKLR1 3'UTR 0.09 TCGA-H4-A2HQ-01 12 110456242 110456242 G C ANKRD13A Missense_Mutation p.E165Q 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-H4-A2HQ-01 12 113314469 113314469 G A RPH3A Silent p.G323G 0.27 TCGA-H4-A2HQ-01 12 113600964 113600964 C T DDX54 Missense_Mutation p.R685Q 0.68 tolerated(0.29) benign(0.15) TCGA-H4-A2HQ-01 12 120635157 120635157 C G RPLP0 Missense_Mutation p.E254Q 0.16 tolerated(0.14) possibly_damaging(0.906) TCGA-H4-A2HQ-01 12 122286936 122286936 G T HPD Missense_Mutation p.P189T 0.11 deleterious(0.05) probably_damaging(0.938) TCGA-H4-A2HQ-01 12 123343743 123343743 A T HIP1R Missense_Mutation p.Q765L 0.40 deleterious(0.02) possibly_damaging(0.58) TCGA-H4-A2HQ-01 12 123494488 123494488 G A PITPNM2 Silent p.V184V 0.21 TCGA-H4-A2HQ-01 12 124420112 124420112 C T DNAH10 3'UTR 0.15 TCGA-H4-A2HQ-01 12 12483751 12483751 C G MANSC1 Missense_Mutation p.R169T 0.14 tolerated(0.1) benign(0.002) TCGA-H4-A2HQ-01 12 13240941 13240941 G A GSG1 Silent p.F155F 0.14 TCGA-H4-A2HQ-01 12 133428240 133428240 C G CHFR Missense_Mutation p.E498Q 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-H4-A2HQ-01 12 133428241 133428241 C T CHFR Silent p.A497A 0.17 TCGA-H4-A2HQ-01 12 13768066 13768066 A T GRIN2B Missense_Mutation p.S546T 0.29 deleterious(0) benign(0.378) TCGA-H4-A2HQ-01 12 1599298 1599298 G A ERC1 Missense_Mutation p.E1085K 0.33 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-H4-A2HQ-01 12 23893833 23893833 G T SOX5 Missense_Mutation p.Q237K 0.11 deleterious(0) probably_damaging(0.966) TCGA-H4-A2HQ-01 12 27148173 27148173 G A TM7SF3 Silent p.L229L 0.15 TCGA-H4-A2HQ-01 12 32136973 32136973 C T KIAA1551 Silent p.S1028S 0.08 TCGA-H4-A2HQ-01 12 3649850 3649850 C G PRMT8 Missense_Mutation p.Q52E 0.13 tolerated(1) benign(0.001) TCGA-H4-A2HQ-01 12 4599751 4599751 G A C12orf4 Silent p.F501F 0.21 TCGA-H4-A2HQ-01 12 49446362 49446362 C A KMT2D Nonsense_Mutation p.E415* 0.23 TCGA-H4-A2HQ-01 12 49446375 49446375 C G KMT2D Silent p.G410G 0.28 TCGA-H4-A2HQ-01 12 52056596 52056596 G A SCN8A 5'UTR 0.14 TCGA-H4-A2HQ-01 12 53679861 53679861 A T ESPL1 Missense_Mutation p.K1114M 0.22 deleterious(0.02) benign(0.045) TCGA-H4-A2HQ-01 12 53899548 53899548 C G TARBP2 Missense_Mutation p.S286C 0.22 deleterious(0.03) benign(0.085) TCGA-H4-A2HQ-01 12 55820354 55820354 C T OR6C76 Missense_Mutation p.S106L 0.23 deleterious_low_confidence(0.03) benign(0.341) TCGA-H4-A2HQ-01 12 55886710 55886710 G A OR6C68 Silent p.L183L 0.19 TCGA-H4-A2HQ-01 12 6143929 6143929 G A VWF Silent p.I870I 0.20 TCGA-H4-A2HQ-01 12 6664602 6664602 C T IFFO1 Silent p.S198S 0.12 TCGA-H4-A2HQ-01 12 6749264 6749264 C G ACRBP Missense_Mutation p.E463Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-H4-A2HQ-01 12 69250093 69250093 T C CPM 3'UTR 0.07 TCGA-H4-A2HQ-01 12 72014016 72014016 C G ZFC3H1 Missense_Mutation p.M1608I 0.06 tolerated(0.16) benign(0.03) TCGA-H4-A2HQ-01 12 7942264 7942264 C G NANOG Missense_Mutation p.D18E 0.16 tolerated(0.18) benign(0.009) TCGA-H4-A2HQ-01 12 8988223 8988223 G A A2ML1 Missense_Mutation p.E202K 0.24 tolerated(0.34) benign(0.145) TCGA-H4-A2HQ-01 12 96692644 96692644 T A CDK17 Intron 0.25 TCGA-H4-A2HQ-01 13 109562401 109562401 C G MYO16 Missense_Mutation p.L588V 0.16 tolerated(0.35) benign(0.033) TCGA-H4-A2HQ-01 13 113208461 113208461 G C TUBGCP3 Silent p.V292V 0.17 TCGA-H4-A2HQ-01 13 113556592 113556592 G A MCF2L Missense_Mutation p.E26K 0.13 tolerated_low_confidence(0.08) benign(0.266) TCGA-H4-A2HQ-01 13 114523732 114523732 G A GAS6 3'UTR 0.50 TCGA-H4-A2HQ-01 13 23907016 23907016 G A SACS Missense_Mutation p.H3667Y 0.18 probably_damaging(0.977) TCGA-H4-A2HQ-01 13 23914840 23914840 C G SACS Missense_Mutation p.E1059Q 0.18 benign(0.068) TCGA-H4-A2HQ-01 13 25744587 25744587 C G AMER2 Missense_Mutation p.E391Q 0.16 deleterious(0.02) possibly_damaging(0.683) TCGA-H4-A2HQ-01 13 27332937 27332937 G C GPR12 3'UTR 0.18 TCGA-H4-A2HQ-01 13 27333290 27333290 C A GPR12 Missense_Mutation p.M225I 0.49 tolerated(0.4) benign(0.043) TCGA-H4-A2HQ-01 13 35926317 35926317 T C NBEA Silent p.A2012A 0.50 TCGA-H4-A2HQ-01 13 36428670 36428670 G A DCLK1 Missense_Mutation p.S334L 0.29 deleterious(0.03) possibly_damaging(0.504) TCGA-H4-A2HQ-01 13 46287727 46287727 C G SPERT Silent p.L189L 0.15 TCGA-H4-A2HQ-01 13 49710722 49710722 G A FNDC3A Missense_Mutation p.D249N 0.11 tolerated(0.16) benign(0.334) TCGA-H4-A2HQ-01 13 51528086 51528086 A G RNASEH2B Missense_Mutation p.T263A 0.57 deleterious(0.01) possibly_damaging(0.803) TCGA-H4-A2HQ-01 13 53286974 53286974 C G LECT1 Missense_Mutation p.E167Q 0.29 deleterious(0.02) benign(0.029) TCGA-H4-A2HQ-01 13 73321010 73321010 G C BORA Missense_Mutation p.E415Q 0.24 deleterious(0.03) possibly_damaging(0.733) TCGA-H4-A2HQ-01 13 73334745 73334745 A G DIS3 Silent p.D905D 0.18 TCGA-H4-A2HQ-01 13 75900527 75900527 T A TBC1D4 Silent p.T613T 0.11 TCGA-H4-A2HQ-01 13 99114063 99114063 C G STK24 Missense_Mutation p.G352R 0.17 deleterious(0.02) possibly_damaging(0.707) TCGA-H4-A2HQ-01 14 102510695 102510695 G C DYNC1H1 Missense_Mutation p.D4257H 0.35 probably_damaging(0.986) TCGA-H4-A2HQ-01 14 24687356 24687356 G A NEDD8-MDP1 Silent p.I44I 0.37 TCGA-H4-A2HQ-01 14 25045381 25045381 C A CTSG Nonsense_Mutation p.E17* 0.29 TCGA-H4-A2HQ-01 14 26939652 26939652 C G NOVA1 Intron 0.12 TCGA-H4-A2HQ-01 14 45679581 45679581 A C MIS18BP1 Splice_Site p.X1051_splice 0.27 TCGA-H4-A2HQ-01 14 50845115 50845115 G C CDKL1 Intron 0.23 TCGA-H4-A2HQ-01 14 52781368 52781368 C T PTGER2 Silent p.A34A 0.51 TCGA-H4-A2HQ-01 14 60193667 60193667 G C RTN1 Missense_Mutation p.P579A 0.21 tolerated(0.08) benign(0.006) TCGA-H4-A2HQ-01 14 60749714 60749714 A G PPM1A Missense_Mutation p.K171R 0.28 tolerated(0.34) benign(0.03) TCGA-H4-A2HQ-01 14 64497985 64497985 C G SYNE2 Silent p.G2377G 0.25 TCGA-H4-A2HQ-01 14 88936060 88936060 C A PTPN21 Missense_Mutation p.K1006N 0.33 deleterious(0) probably_damaging(0.947) TCGA-H4-A2HQ-01 14 89109329 89109329 C G EML5 Missense_Mutation p.R1382T 0.26 tolerated(0.1) benign(0.001) TCGA-H4-A2HQ-01 14 93717986 93717986 C T BTBD7 Missense_Mutation p.E589K 0.56 deleterious(0.04) probably_damaging(0.967) TCGA-H4-A2HQ-01 15 20588578 20588578 C A HERC2P3 RNA 0.14 TCGA-H4-A2HQ-01 15 22368561 22368561 G C OR4M2 5'UTR 0.14 TCGA-H4-A2HQ-01 15 40301819 40301819 G C EIF2AK4 Missense_Mutation p.R1194T 0.24 deleterious(0) possibly_damaging(0.609) TCGA-H4-A2HQ-01 15 41794660 41794660 C T ITPKA Missense_Mutation p.R357C 0.32 deleterious(0.03) benign(0.011) TCGA-H4-A2HQ-01 15 48434351 48434351 A G SLC24A5 Missense_Mutation p.R436G 0.28 tolerated(0.24) benign(0.001) TCGA-H4-A2HQ-01 15 48444460 48444460 C - MYEF2 Frame_Shift_Del p.G370Vfs*5 0.20 TCGA-H4-A2HQ-01 15 50784944 50784944 C G USP8 Missense_Mutation p.Q761E 0.22 deleterious(0.04) benign(0.31) TCGA-H4-A2HQ-01 15 54008834 54008834 A T WDR72 Silent p.A103A 0.26 TCGA-H4-A2HQ-01 15 57921940 57921940 A T GCOM1 Missense_Mutation p.K189M 0.27 deleterious(0) probably_damaging(0.978) TCGA-H4-A2HQ-01 15 62219320 62219320 G C VPS13C Silent p.L2162L 0.32 TCGA-H4-A2HQ-01 15 67547218 67547218 C G IQCH 5'UTR 0.31 TCGA-H4-A2HQ-01 15 75183880 75183880 C T MPI Missense_Mutation p.S102L 0.30 deleterious(0) probably_damaging(0.973) TCGA-H4-A2HQ-01 15 80855426 80855426 C T ARNT2 Intron 0.24 TCGA-H4-A2HQ-01 16 11444614 11444614 G A RMI2 Silent p.L137L 0.16 TCGA-H4-A2HQ-01 16 1836612 1836612 A G NUBP2 Missense_Mutation p.I31V 0.12 tolerated(1) benign(0.009) TCGA-H4-A2HQ-01 16 19126901 19126901 T A ITPRIPL2 Missense_Mutation p.L373H 0.19 deleterious(0) probably_damaging(0.996) TCGA-H4-A2HQ-01 16 21073952 21073952 C T DNAH3 Missense_Mutation p.D1191N 0.26 deleterious(0.02) probably_damaging(0.942) TCGA-H4-A2HQ-01 16 2110796 2110796 G A TSC2 Silent p.R367R 0.38 TCGA-H4-A2HQ-01 16 27221612 27221612 C T KDM8 Silent p.F94F 0.18 TCGA-H4-A2HQ-01 16 2868796 2868796 C T PRSS21 Silent p.L126L 0.18 TCGA-H4-A2HQ-01 16 29367142 29367142 C G SNX29P2 RNA 0.11 TCGA-H4-A2HQ-01 16 29415190 29415190 G C NPIPB11 Intron 0.64 TCGA-H4-A2HQ-01 16 29820889 29820889 C G MAZ Missense_Mutation p.I436M 0.11 tolerated(0.07) benign(0.102) TCGA-H4-A2HQ-01 16 30768762 30768762 C G C16orf93 3'Flank 0.14 TCGA-H4-A2HQ-01 16 30780185 30780185 G A RNF40 Silent p.R708R 0.27 TCGA-H4-A2HQ-01 16 32890988 32890988 G T SLC6A10P RNA 0.37 TCGA-H4-A2HQ-01 16 3641148 3641148 C A SLX4 Nonsense_Mutation p.E831* 0.39 TCGA-H4-A2HQ-01 16 4431070 4431070 C T VASN Silent p.I64I 0.32 TCGA-H4-A2HQ-01 16 49433094 49433094 G A C16orf78 Missense_Mutation p.D235N 0.18 deleterious(0) possibly_damaging(0.744) TCGA-H4-A2HQ-01 16 5075523 5075523 C T NAGPA Missense_Mutation p.E502K 0.20 benign(0.169) TCGA-H4-A2HQ-01 16 56362664 56362664 A G GNAO1 Missense_Mutation p.N142S 0.26 tolerated(1) benign(0) TCGA-H4-A2HQ-01 16 56423172 56423172 C T AMFR Missense_Mutation p.E401K 0.12 tolerated(0.13) benign(0.065) TCGA-H4-A2HQ-01 16 57712121 57712121 G C GPR97 Missense_Mutation p.D129H 0.15 deleterious(0.02) probably_damaging(0.919) TCGA-H4-A2HQ-01 16 57935315 57935315 C T CNGB1 Missense_Mutation p.D973N 0.25 deleterious(0) probably_damaging(0.98) TCGA-H4-A2HQ-01 16 67709852 67709852 T A GFOD2 Missense_Mutation p.N122Y 0.11 tolerated(0.15) benign(0.161) TCGA-H4-A2HQ-01 16 67768937 67768937 G C RANBP10 Silent p.L200L 0.12 TCGA-H4-A2HQ-01 16 67917346 67917346 C T EDC4 Intron 0.12 TCGA-H4-A2HQ-01 16 68835746 68835746 A G CDH1 Missense_Mutation p.K113E 0.14 tolerated(0.81) benign(0.033) TCGA-H4-A2HQ-01 16 71482035 71482035 G C ZNF23 Silent p.L631L 0.08 TCGA-H4-A2HQ-01 16 75646149 75646149 C T ADAT1 Silent p.L345L 0.15 TCGA-H4-A2HQ-01 16 88598530 88598530 C T ZFPM1 Missense_Mutation p.T278I 0.45 tolerated(0.46) benign(0.186) TCGA-H4-A2HQ-01 16 89813043 89813043 G A FANCA Silent p.F1154F 0.24 TCGA-H4-A2HQ-01 17 10216043 10216043 C A MYH13 Nonsense_Mutation p.E1405* 0.23 TCGA-H4-A2HQ-01 17 10243492 10243492 C G MYH13 Silent p.L677L 0.83 TCGA-H4-A2HQ-01 17 10309620 10309620 G A MYH8 Missense_Mutation p.H756Y 0.36 deleterious(0.01) possibly_damaging(0.848) TCGA-H4-A2HQ-01 17 10395785 10395785 T G MYH1 Missense_Mutation p.K1923T 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-H4-A2HQ-01 17 17924527 17924527 G C ATPAF2 Silent p.L214L 0.21 TCGA-H4-A2HQ-01 17 18042859 18042859 C T MYO15A Silent p.F1715F 0.62 TCGA-H4-A2HQ-01 17 19608794 19608794 G C SLC47A2 Silent p.L324L 0.17 TCGA-H4-A2HQ-01 17 19646659 19646659 G A ALDH3A1 Nonsense_Mutation p.Q94* 0.13 TCGA-H4-A2HQ-01 17 27998974 27998974 G C SSH2 Missense_Mutation p.S236C 0.06 deleterious(0.01) probably_damaging(0.945) TCGA-H4-A2HQ-01 17 27998987 27998987 G T SSH2 Missense_Mutation p.H232N 0.07 deleterious(0.03) possibly_damaging(0.493) TCGA-H4-A2HQ-01 17 27999025 27999025 G A SSH2 Missense_Mutation p.S219L 0.05 tolerated(0.23) benign(0.24) TCGA-H4-A2HQ-01 17 30814982 30814982 C A CDK5R1 Nonsense_Mutation p.S115* 0.32 TCGA-H4-A2HQ-01 17 32954018 32954018 T G TMEM132E Missense_Mutation p.Y224D 0.13 tolerated(0.15) possibly_damaging(0.587) TCGA-H4-A2HQ-01 17 34951498 34951498 C T DHRS11 Missense_Mutation p.S82L 0.44 tolerated(0.11) benign(0.043) TCGA-H4-A2HQ-01 17 38080454 38080454 C T ORMDL3 Translation_Start_Site p.M1? 0.11 deleterious(0.01) possibly_damaging(0.578) TCGA-H4-A2HQ-01 17 38151529 38151529 G A PSMD3 Silent p.R399R 0.14 TCGA-H4-A2HQ-01 17 39019991 39019991 C T KRT12 Silent p.Q311Q 0.64 TCGA-H4-A2HQ-01 17 39140301 39140304 CCCC TTTT KRT40 Missense_Mutation p.G75K 0.18 TCGA-H4-A2HQ-01 17 39645947 39645947 G C KRT36 Missense_Mutation p.S57C 0.64 tolerated(0.22) benign(0.004) TCGA-H4-A2HQ-01 17 42271461 42271461 G A ATXN7L3 3'UTR 0.75 TCGA-H4-A2HQ-01 17 43138785 43138785 T C NMT1 Missense_Mutation p.C30R 0.81 deleterious_low_confidence(0.01) possibly_damaging(0.616) TCGA-H4-A2HQ-01 17 4841336 4841336 C T SLC25A11 Silent p.P257P 0.19 TCGA-H4-A2HQ-01 17 5009199 5009199 C G ZNF232 Missense_Mutation p.E419Q 0.65 deleterious(0.05) benign(0.284) TCGA-H4-A2HQ-01 17 5336678 5336678 G C C1QBP Missense_Mutation p.Q212E 0.26 tolerated(0.07) benign(0.198) TCGA-H4-A2HQ-01 17 53798395 53798395 G A TMEM100 Missense_Mutation p.P13S 0.13 tolerated(0.08) benign(0.359) TCGA-H4-A2HQ-01 17 56270125 56270125 C G EPX 5'UTR 0.56 TCGA-H4-A2HQ-01 17 56277646 56277650 ATGCC - EPX Frame_Shift_Del p.A534Vfs*4 0.20 TCGA-H4-A2HQ-01 17 61895172 61895172 C T DDX42 Missense_Mutation p.S744L 0.64 deleterious_low_confidence(0.01) benign(0.057) TCGA-H4-A2HQ-01 17 7250491 7250491 G A ACAP1 Missense_Mutation p.E425K 0.27 tolerated(0.09) probably_damaging(0.984) TCGA-H4-A2HQ-01 17 73242646 73242646 G T GGA3 Missense_Mutation p.L49M 0.16 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 17 74068550 74068550 G - SRP68 Frame_Shift_Del p.P8Qfs*51 0.14 TCGA-H4-A2HQ-01 18 10487667 10487667 G A APCDD1 Missense_Mutation p.E393K 0.27 tolerated(0.65) benign(0.22) TCGA-H4-A2HQ-01 18 20837363 20837363 C T CABLES1 3'UTR 0.13 TCGA-H4-A2HQ-01 18 47369614 47369614 C T MYO5B Silent p.L1536L 0.20 TCGA-H4-A2HQ-01 18 63526247 63526247 G A CDH7 Missense_Mutation p.E487K 0.13 deleterious(0.01) probably_damaging(0.909) TCGA-H4-A2HQ-01 18 72343704 72343704 C G ZNF407 Silent p.V243V 0.22 TCGA-H4-A2HQ-01 19 10444084 10444084 C T RAVER1 Missense_Mutation p.E51K 0.15 deleterious(0.01) benign(0.045) TCGA-H4-A2HQ-01 19 10745710 10745710 G A SLC44A2 Missense_Mutation p.R339K 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-H4-A2HQ-01 19 11446394 11446394 G C RAB3D Missense_Mutation p.F98L 0.20 deleterious(0.01) probably_damaging(1) TCGA-H4-A2HQ-01 19 11708390 11708390 G A ZNF627 5'UTR 0.19 TCGA-H4-A2HQ-01 19 1271019 1271019 C T CIRBP Silent p.Y29Y 0.20 TCGA-H4-A2HQ-01 19 14150615 14150615 G A IL27RA Missense_Mutation p.D143N 0.68 tolerated(0.17) benign(0.03) TCGA-H4-A2HQ-01 19 14231399 14231399 C A ASF1B Nonsense_Mutation p.E161* 0.29 TCGA-H4-A2HQ-01 19 14675655 14675655 C G TECR Missense_Mutation p.L183V 0.12 deleterious(0.02) benign(0.436) TCGA-H4-A2HQ-01 19 1612404 1612404 C T TCF3 Intron 0.24 TCGA-H4-A2HQ-01 19 17476638 17476638 C G PLVAP Missense_Mutation p.Q212H 0.20 deleterious(0) probably_damaging(0.954) TCGA-H4-A2HQ-01 19 17735691 17735691 C T UNC13A Missense_Mutation p.V1382I 0.15 deleterious(0) possibly_damaging(0.842) TCGA-H4-A2HQ-01 19 18279688 18279688 G T PIK3R2 Missense_Mutation p.C654F 0.14 deleterious(0.02) benign(0.234) TCGA-H4-A2HQ-01 19 2339822 2339822 G A SPPL2B Splice_Site 0.29 TCGA-H4-A2HQ-01 19 31040280 31040280 G A ZNF536 Missense_Mutation p.E1252K 0.26 deleterious_low_confidence(0.01) benign(0.16) TCGA-H4-A2HQ-01 19 3251037 3251037 C T CELF5 Missense_Mutation p.A105V 0.20 tolerated(0.05) benign(0.003) TCGA-H4-A2HQ-01 19 34263476 34263476 C G CHST8 Missense_Mutation p.F261L 0.08 tolerated(0.25) benign(0.048) TCGA-H4-A2HQ-01 19 35850555 35850555 C G FFAR3 Missense_Mutation p.P255A 0.05 deleterious(0.01) possibly_damaging(0.908) TCGA-H4-A2HQ-01 19 39759824 39759824 C A IFNL2 Nonsense_Mutation p.C75* 0.17 TCGA-H4-A2HQ-01 19 42932851 42932851 G C CXCL17 3'UTR 0.23 TCGA-H4-A2HQ-01 19 4537865 4537865 C T LRG1 3'UTR 0.36 TCGA-H4-A2HQ-01 19 45910367 45910367 C T CD3EAP Missense_Mutation p.S13F 0.10 deleterious(0) probably_damaging(0.936) TCGA-H4-A2HQ-01 19 47502569 47502569 G A ARHGAP35 Missense_Mutation p.D1349N 0.30 tolerated(0.09) probably_damaging(0.923) TCGA-H4-A2HQ-01 19 50387551 50387551 G C TBC1D17 Missense_Mutation p.E390Q 0.12 deleterious(0.02) benign(0.183) TCGA-H4-A2HQ-01 19 50387587 50387587 G A TBC1D17 Missense_Mutation p.D402N 0.14 deleterious(0.01) probably_damaging(1) TCGA-H4-A2HQ-01 19 50387778 50387778 G C TBC1D17 Missense_Mutation p.D436H 0.12 deleterious(0) probably_damaging(0.997) TCGA-H4-A2HQ-01 19 51485709 51485709 T A KLK7 5'UTR 0.14 TCGA-H4-A2HQ-01 19 52249881 52249881 G A FPR1 Missense_Mutation p.R123C 0.32 tolerated(0.06) possibly_damaging(0.741) TCGA-H4-A2HQ-01 19 52393957 52393957 G A ZNF649 Missense_Mutation p.H478Y 0.04 tolerated(1) benign(0.005) TCGA-H4-A2HQ-01 19 52507119 52507119 T A ZNF615 5'UTR 0.25 TCGA-H4-A2HQ-01 19 53453850 53453850 C G ZNF816 Missense_Mutation p.G393A 0.40 deleterious(0.02) possibly_damaging(0.874) TCGA-H4-A2HQ-01 19 55897738 55897738 C G RPL28 Missense_Mutation p.L5V 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-H4-A2HQ-01 19 55918274 55918274 C A UBE2S Silent p.V20V 0.13 TCGA-H4-A2HQ-01 19 56175100 56175100 C G U2AF2 Silent p.V244V 0.30 TCGA-H4-A2HQ-01 19 57058946 57058946 C T ZFP28 Nonsense_Mutation p.Q124* 0.15 TCGA-H4-A2HQ-01 19 57744973 57744973 T A AURKC Missense_Mutation p.L194Q 0.15 tolerated(0.22) possibly_damaging(0.852) TCGA-H4-A2HQ-01 19 8670587 8670587 G T ADAMTS10 Silent p.P3P 0.37 TCGA-H4-A2HQ-01 19 875330 875330 G A MED16 Missense_Mutation p.S562L 0.29 deleterious(0) possibly_damaging(0.651) TCGA-H4-A2HQ-01 19 9063595 9063595 T A MUC16 Missense_Mutation p.R7951W 0.23 unknown(0) TCGA-H4-A2HQ-01 1 107867236 107867236 G A NTNG1 Silent p.V193V 0.30 TCGA-H4-A2HQ-01 1 11007721 11007721 C T C1orf127 Silent p.%3D 0.17 TCGA-H4-A2HQ-01 1 110882179 110882179 C A RBM15 Nonsense_Mutation p.S51* 0.18 TCGA-H4-A2HQ-01 1 113460090 113460090 C A SLC16A1 Missense_Mutation p.R313L 0.17 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 1 117297379 117297379 C G CD2 Nonsense_Mutation p.S63* 0.09 TCGA-H4-A2HQ-01 1 12090089 12090089 A T MIIP Missense_Mutation p.S284C 0.17 deleterious(0) probably_damaging(0.978) TCGA-H4-A2HQ-01 1 12429573 12429573 G T VPS13D Nonsense_Mutation p.E3542* 0.13 TCGA-H4-A2HQ-01 1 1268732 1268732 G A TAS1R3 Missense_Mutation p.E525K 0.22 tolerated(1) benign(0.002) TCGA-H4-A2HQ-01 1 12785550 12785550 G A AADACL3 Missense_Mutation p.A214T 0.54 tolerated(0.22) benign(0.026) TCGA-H4-A2HQ-01 1 145301717 145301717 C G NBPF10 Intron 0.21 TCGA-H4-A2HQ-01 1 150444194 150444194 G A RPRD2 Missense_Mutation p.G924R 0.22 deleterious_low_confidence(0.01) benign(0.398) TCGA-H4-A2HQ-01 1 150551725 150551725 C G MCL1 Silent p.A94A 0.33 TCGA-H4-A2HQ-01 1 153270479 153270479 G - PGLYRP3 Frame_Shift_Del p.Q327Rfs*? 0.32 TCGA-H4-A2HQ-01 1 15813791 15813791 T A CELA2B Silent p.G217G 0.18 TCGA-H4-A2HQ-01 1 159273962 159273962 A C FCER1A Missense_Mutation p.E107D 0.06 tolerated(0.13) benign(0.007) TCGA-H4-A2HQ-01 1 16060340 16060340 T G PLEKHM2 Missense_Mutation p.F991V 0.21 deleterious(0.04) benign(0.066) TCGA-H4-A2HQ-01 1 160616758 160616758 G A SLAMF1 5'UTR 0.72 TCGA-H4-A2HQ-01 1 161276626 161276626 C T MPZ Nonsense_Mutation p.W107* 0.10 TCGA-H4-A2HQ-01 1 161488742 161488742 C G FCGR2A 3'UTR 0.16 TCGA-H4-A2HQ-01 1 16459810 16459810 C A EPHA2 Nonsense_Mutation p.E640* 0.16 TCGA-H4-A2HQ-01 1 172526519 172526519 T A SUCO Silent p.A181A 0.69 TCGA-H4-A2HQ-01 1 17314949 17314949 C G ATP13A2 Missense_Mutation p.G877A 0.18 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 1 173810010 173810010 G C DARS2 Missense_Mutation p.D343H 0.07 deleterious(0) probably_damaging(0.993) TCGA-H4-A2HQ-01 1 176913088 176913088 G T ASTN1 Silent p.P772P 0.25 TCGA-H4-A2HQ-01 1 179310346 179310346 C T SOAT1 Silent p.F227F 0.18 TCGA-H4-A2HQ-01 1 181018405 181018405 C G MR1 Missense_Mutation p.F95L 0.14 tolerated(0.06) possibly_damaging(0.755) TCGA-H4-A2HQ-01 1 183532431 183532431 G A NCF2 Missense_Mutation p.R397W 0.23 deleterious(0.01) benign(0.013) TCGA-H4-A2HQ-01 1 19441311 19441311 C T UBR4 Silent p.R3732R 0.16 TCGA-H4-A2HQ-01 1 200824006 200824006 G C CAMSAP2 Missense_Mutation p.K1295N 0.21 tolerated(0.08) possibly_damaging(0.735) TCGA-H4-A2HQ-01 1 20107215 20107215 G C TMCO4 Missense_Mutation p.Q13E 0.11 tolerated_low_confidence(0.33) benign(0.029) TCGA-H4-A2HQ-01 1 203678495 203678495 T G ATP2B4 Missense_Mutation p.F542V 0.34 deleterious(0) benign(0.393) TCGA-H4-A2HQ-01 1 207087118 207087119 - G FAIM3 Frame_Shift_Ins p.L120Pfs*6 0.13 TCGA-H4-A2HQ-01 1 207135777 207135777 G A FCAMR Silent p.L145L 0.20 TCGA-H4-A2HQ-01 1 207286412 207286412 A C C4BPA Missense_Mutation p.K14N 0.48 tolerated(0.07) benign(0.034) TCGA-H4-A2HQ-01 1 208072532 208072532 G C CD34 Nonsense_Mutation p.S101* 0.12 TCGA-H4-A2HQ-01 1 21042025 21042025 G C KIF17 Missense_Mutation p.I113M 0.19 deleterious(0) possibly_damaging(0.842) TCGA-H4-A2HQ-01 1 216052273 216052273 T A USH2A Silent p.S2797S 0.17 TCGA-H4-A2HQ-01 1 22084278 22084278 T C USP48 Splice_Site p.X45_splice 0.14 TCGA-H4-A2HQ-01 1 223976866 223976866 G A TP53BP2 Missense_Mutation p.H1003Y 0.17 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 1 227921448 227921448 G C SNAP47 5'Flank 0.32 TCGA-H4-A2HQ-01 1 228595866 228595866 G A TRIM17 3'UTR 0.09 TCGA-H4-A2HQ-01 1 232596869 232596869 C T SIPA1L2 Silent p.L953L 0.31 TCGA-H4-A2HQ-01 1 234452365 234452365 C T SLC35F3 Silent p.L282L 0.35 TCGA-H4-A2HQ-01 1 24021182 24021182 C T RPL11 Silent p.F99F 0.59 TCGA-H4-A2HQ-01 1 24021260 24021260 C G RPL11 Missense_Mutation p.I125M 0.51 deleterious(0) probably_damaging(0.939) TCGA-H4-A2HQ-01 1 247323035 247323035 G C ZNF124 Silent p.L37L 0.34 TCGA-H4-A2HQ-01 1 247902465 247902465 A G OR14K1 Silent p.L183L 0.13 TCGA-H4-A2HQ-01 1 248129260 248129260 G A OR2AK2 Silent p.Q209Q 0.36 TCGA-H4-A2HQ-01 1 3102752 3102752 C A PRDM16 Missense_Mutation p.A34E 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-H4-A2HQ-01 1 34208917 34208917 A T CSMD2 Missense_Mutation p.S673T 0.22 tolerated(0.07) benign(0.26) TCGA-H4-A2HQ-01 1 34291361 34291361 C G CSMD2 Missense_Mutation p.E310Q 0.16 tolerated(0.07) possibly_damaging(0.806) TCGA-H4-A2HQ-01 1 35579264 35579264 C T ZMYM1 Silent p.F611F 0.22 TCGA-H4-A2HQ-01 1 35580694 35580694 C A ZMYM1 Missense_Mutation p.S1088Y 0.18 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 1 36298149 36298149 C T AGO4 Nonsense_Mutation p.Q453* 0.25 TCGA-H4-A2HQ-01 1 41978764 41978764 C G HIVEP3 Missense_Mutation p.R2043T 0.18 benign(0.002) TCGA-H4-A2HQ-01 1 43282117 43282117 C G CCDC23 Missense_Mutation p.Q33H 0.15 deleterious(0.04) possibly_damaging(0.865) TCGA-H4-A2HQ-01 1 43890034 43890034 G T SZT2 Missense_Mutation p.S801I 0.19 deleterious(0.03) benign(0.307) TCGA-H4-A2HQ-01 1 44401702 44401702 C T ARTN Intron 0.45 TCGA-H4-A2HQ-01 1 54520107 54520107 C A TCEANC2 Missense_Mutation p.F4L 0.16 deleterious(0) possibly_damaging(0.619) TCGA-H4-A2HQ-01 1 6284971 6284971 G A ICMT 3'UTR 0.19 TCGA-H4-A2HQ-01 1 65273062 65273062 C T RAVER2 Missense_Mutation p.L516F 0.10 tolerated(0.26) probably_damaging(0.975) TCGA-H4-A2HQ-01 1 67724193 67724193 T G IL23R Missense_Mutation p.S424R 0.11 tolerated(0.06) benign(0.078) TCGA-H4-A2HQ-01 1 70504754 70504754 G A LRRC7 Missense_Mutation p.E1045K 0.24 tolerated(0.11) benign(0.169) TCGA-H4-A2HQ-01 1 70877031 70877031 C T CTH 5'UTR 0.16 TCGA-H4-A2HQ-01 1 74507428 74507428 T A LRRIQ3 Missense_Mutation p.K396I 0.14 tolerated(0.12) benign(0.137) TCGA-H4-A2HQ-01 1 74670357 74670357 A G FPGT Missense_Mutation p.D209G 0.10 deleterious(0.04) benign(0.023) TCGA-H4-A2HQ-01 1 82421724 82421724 C G LPHN2 Nonsense_Mutation p.S649* 0.47 TCGA-H4-A2HQ-01 1 84335536 84335536 C G TTLL7 3'UTR 0.55 TCGA-H4-A2HQ-01 1 84335732 84335732 C G TTLL7 Missense_Mutation p.L859F 0.48 deleterious_low_confidence(0.01) benign(0.054) TCGA-H4-A2HQ-01 1 85331077 85331077 T C LPAR3 Missense_Mutation p.T243A 0.17 tolerated(0.16) benign(0.007) TCGA-H4-A2HQ-01 1 91784914 91784914 T C HFM1 Missense_Mutation p.I872M 0.57 deleterious(0.01) probably_damaging(0.928) TCGA-H4-A2HQ-01 1 92178024 92178024 C G TGFBR3 Missense_Mutation p.D648H 0.17 deleterious(0.01) possibly_damaging(0.901) TCGA-H4-A2HQ-01 20 168750 168750 C T DEFB128 Missense_Mutation p.R20K 0.07 tolerated(0.37) benign(0.364) TCGA-H4-A2HQ-01 20 18477879 18477879 G A RBBP9 5'UTR 0.22 TCGA-H4-A2HQ-01 20 19956386 19956386 G C RIN2 Missense_Mutation p.E622Q 0.21 deleterious(0) probably_damaging(0.959) TCGA-H4-A2HQ-01 20 23669647 23669647 G C CST4 5'UTR 0.23 TCGA-H4-A2HQ-01 20 25656356 25656356 C T ZNF337 Missense_Mutation p.R523Q 0.07 tolerated(0.07) possibly_damaging(0.553) TCGA-H4-A2HQ-01 20 2573052 2573052 G C TMC2 Missense_Mutation p.E311Q 0.38 tolerated(0.15) possibly_damaging(0.811) TCGA-H4-A2HQ-01 20 30193847 30193847 T G ID1 Intron 0.62 TCGA-H4-A2HQ-01 20 30408240 30408240 G A MYLK2 Missense_Mutation p.D122N 0.23 tolerated(0.2) benign(0.002) TCGA-H4-A2HQ-01 20 32199130 32199130 C T CBFA2T2 Missense_Mutation p.L146F 0.10 deleterious(0.03) possibly_damaging(0.691) TCGA-H4-A2HQ-01 20 33596493 33596493 C T TRPC4AP Silent p.K523K 0.22 TCGA-H4-A2HQ-01 20 34219936 34219936 T A CPNE1 Silent p.G161G 0.13 TCGA-H4-A2HQ-01 20 34596337 34596337 C T CNBD2 Silent p.F363F 0.08 TCGA-H4-A2HQ-01 20 35381176 35381176 G A DSN1 3'UTR 0.24 TCGA-H4-A2HQ-01 20 36625251 36625251 G A TTI1 Silent p.I966I 0.13 TCGA-H4-A2HQ-01 20 3783805 3783805 G A CDC25B Silent p.V436V 0.35 TCGA-H4-A2HQ-01 20 39316774 39316774 C T MAFB Silent p.L239L 0.10 TCGA-H4-A2HQ-01 20 42086760 42086760 C G SRSF6 Silent p.L29L 0.16 TCGA-H4-A2HQ-01 20 42635186 42635186 G A TOX2 Splice_Site p.X56_splice 0.11 TCGA-H4-A2HQ-01 20 43355830 43355830 T A WISP2 Missense_Mutation p.M212K 0.24 deleterious(0) benign(0.233) TCGA-H4-A2HQ-01 20 43379189 43379189 A C KCNK15 Missense_Mutation p.I235L 0.19 deleterious(0.04) benign(0.129) TCGA-H4-A2HQ-01 20 43804728 43804728 G A PI3 Silent p.K102K 0.10 TCGA-H4-A2HQ-01 20 46279914 46279914 C T NCOA3 Silent p.F1280F 0.20 TCGA-H4-A2HQ-01 20 47274684 47274684 G A PREX1 Missense_Mutation p.S655L 0.35 deleterious(0) benign(0.282) TCGA-H4-A2HQ-01 20 48503325 48503325 A G SLC9A8 Missense_Mutation p.T526A 0.50 deleterious(0.01) possibly_damaging(0.885) TCGA-H4-A2HQ-01 20 56136482 56136482 G A PCK1 Silent p.L5L 0.15 TCGA-H4-A2HQ-01 20 57429712 57429712 T A GNAS Missense_Mutation p.D464E 0.70 tolerated_low_confidence(0.69) unknown(0) TCGA-H4-A2HQ-01 20 62196310 62196310 C G HELZ2 Missense_Mutation p.E1289Q 0.13 tolerated(0.48) benign(0.063) TCGA-H4-A2HQ-01 20 62571633 62571633 G A UCKL1 Silent p.I479I 0.40 TCGA-H4-A2HQ-01 20 62624835 62624835 C G PRPF6 Silent p.L145L 0.38 TCGA-H4-A2HQ-01 21 11039098 11039098 T A BAGE2 RNA 0.06 TCGA-H4-A2HQ-01 21 15746243 15746243 C G HSPA13 Missense_Mutation p.D371H 0.26 deleterious(0) possibly_damaging(0.798) TCGA-H4-A2HQ-01 21 31798111 31798111 G A KRTAP13-3 Silent p.L40L 0.09 TCGA-H4-A2HQ-01 21 34927545 34927545 C T SON Missense_Mutation p.S2003F 0.16 unknown(0) TCGA-H4-A2HQ-01 21 37602841 37602841 G C DOPEY2 Missense_Mutation p.E587Q 0.18 deleterious(0.04) probably_damaging(0.987) TCGA-H4-A2HQ-01 21 40800153 40800153 C T LCA5L Silent p.V89V 0.33 TCGA-H4-A2HQ-01 21 45876889 45876889 C G LRRC3 Missense_Mutation p.S121C 0.25 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 21 46058039 46058039 C T KRTAP10-10 Silent p.C235C 0.26 TCGA-H4-A2HQ-01 22 19384471 19384471 C T HIRA Splice_Site p.X165_splice 0.15 TCGA-H4-A2HQ-01 22 19967410 19967410 G A ARVCF Missense_Mutation p.R418C 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-H4-A2HQ-01 22 23981095 23981095 G T GUSBP11 RNA 0.24 TCGA-H4-A2HQ-01 22 24439456 24439456 G A CABIN1 Missense_Mutation p.A146T 0.20 deleterious(0) probably_damaging(0.999) TCGA-H4-A2HQ-01 22 41625593 41625593 G A L3MBTL2 Silent p.K646K 0.26 TCGA-H4-A2HQ-01 22 42905037 42905037 G A RRP7A 3'Flank 0.44 TCGA-H4-A2HQ-01 22 44514968 44514968 G A PARVB Silent p.V141V 0.25 TCGA-H4-A2HQ-01 22 45970446 45970446 G A FBLN1 Missense_Mutation p.D585N 0.17 tolerated(0.35) benign(0.017) TCGA-H4-A2HQ-01 22 46655230 46655230 C G PKDREJ Missense_Mutation p.Q1330H 0.37 deleterious(0) possibly_damaging(0.722) TCGA-H4-A2HQ-01 22 50277651 50277651 C A ZBED4 Missense_Mutation p.S114Y 0.27 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-H4-A2HQ-01 22 50722117 50722117 C A PLXNB2 Missense_Mutation p.L828F 0.23 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 22 50878445 50878445 G A PPP6R2 Missense_Mutation p.E755K 0.25 deleterious(0.05) benign(0.034) TCGA-H4-A2HQ-01 22 50969699 50969699 C G ODF3B Silent p.G113G 0.24 TCGA-H4-A2HQ-01 2 100020219 100020219 C T REV1 Silent p.A1035A 0.42 TCGA-H4-A2HQ-01 2 102984374 102984374 G A IL18R1 Missense_Mutation p.E50K 0.08 tolerated(0.42) benign(0.009) TCGA-H4-A2HQ-01 2 103119941 103119941 T G SLC9A4 Missense_Mutation p.M252R 0.14 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HQ-01 2 109087478 109087478 C T GCC2 Nonsense_Mutation p.Q565* 0.20 TCGA-H4-A2HQ-01 2 128913070 128913070 C T UGGT1 Silent p.F715F 0.12 TCGA-H4-A2HQ-01 2 139428601 139428601 T C NXPH2 Missense_Mutation p.K229R 0.54 tolerated(0.05) probably_damaging(0.999) TCGA-H4-A2HQ-01 2 141806780 141806780 C G LRP1B Missense_Mutation p.E522Q 0.30 benign(0.307) TCGA-H4-A2HQ-01 2 1481320 1481320 T A TPO Missense_Mutation p.W428R 0.41 deleterious(0) probably_damaging(0.993) TCGA-H4-A2HQ-01 2 159195202 159195202 C G CCDC148 Intron 0.47 TCGA-H4-A2HQ-01 2 160194090 160194090 T A BAZ2B Missense_Mutation p.N1883I 0.27 probably_damaging(0.979) TCGA-H4-A2HQ-01 2 160206576 160206576 G C BAZ2B Missense_Mutation p.N1502K 0.26 benign(0.148) TCGA-H4-A2HQ-01 2 166850897 166850897 G T SCN1A Missense_Mutation p.F1537L 0.27 tolerated(0.5) benign(0.015) TCGA-H4-A2HQ-01 2 168105339 168105339 G A XIRP2 Silent p.Q2479Q 0.46 TCGA-H4-A2HQ-01 2 170019001 170019001 C A LRP2 Missense_Mutation p.W3956C 0.36 benign(0.131) TCGA-H4-A2HQ-01 2 172749752 172749752 C T SLC25A12 Missense_Mutation p.R10Q 0.17 deleterious(0.01) possibly_damaging(0.854) TCGA-H4-A2HQ-01 2 179399173 179399173 C A TTN Nonsense_Mutation p.E34057* 0.19 TCGA-H4-A2HQ-01 2 179444828 179444828 C G TTN Missense_Mutation p.A22396P 0.11 TCGA-H4-A2HQ-01 2 179578817 179578817 G C TTN Silent p.T8856T 0.43 TCGA-H4-A2HQ-01 2 179579153 179579153 A G TTN Missense_Mutation p.I8783T 0.40 TCGA-H4-A2HQ-01 2 179642507 179642507 A C TTN Missense_Mutation p.C1468W 0.17 TCGA-H4-A2HQ-01 2 190921923 190921923 C T MSTN 3'UTR 0.45 TCGA-H4-A2HQ-01 2 196602713 196602713 G A DNAH7 Missense_Mutation p.P4003S 0.14 deleterious(0.03) possibly_damaging(0.809) TCGA-H4-A2HQ-01 2 202000716 202000716 G A CFLAR Missense_Mutation p.E137K 0.16 deleterious(0.01) possibly_damaging(0.669) TCGA-H4-A2HQ-01 2 219559043 219559043 C T STK36 Missense_Mutation p.S798F 0.04 deleterious(0) probably_damaging(0.99) TCGA-H4-A2HQ-01 2 228148486 228148486 A T COL4A3 Missense_Mutation p.E887V 0.27 unknown(0) TCGA-H4-A2HQ-01 2 228881823 228881823 C T SPHKAP Silent p.L1249L 0.12 TCGA-H4-A2HQ-01 2 228882099 228882099 G C SPHKAP Missense_Mutation p.S1157R 0.12 deleterious(0) possibly_damaging(0.822) TCGA-H4-A2HQ-01 2 25141819 25141819 G A ADCY3 Missense_Mutation p.S13L 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-H4-A2HQ-01 2 26706369 26706369 G C OTOF Silent p.L451L 0.12 TCGA-H4-A2HQ-01 2 27804486 27804486 G C C2orf16 Missense_Mutation p.E1683Q 0.03 tolerated(0.44) benign(0.224) TCGA-H4-A2HQ-01 2 31558806 31558806 C T XDH 3'UTR 0.36 TCGA-H4-A2HQ-01 2 32743962 32743962 C T BIRC6 Missense_Mutation p.L3858F 0.17 probably_damaging(0.982) TCGA-H4-A2HQ-01 2 32743965 32743965 C T BIRC6 Missense_Mutation p.H3859Y 0.17 benign(0.125) TCGA-H4-A2HQ-01 2 32743998 32743998 C G BIRC6 Missense_Mutation p.L3870V 0.15 possibly_damaging(0.868) TCGA-H4-A2HQ-01 2 37505009 37505009 C G PRKD3 Silent p.L432L 0.29 TCGA-H4-A2HQ-01 2 43953483 43953483 G C PLEKHH2 Missense_Mutation p.D872H 0.05 deleterious(0) possibly_damaging(0.548) TCGA-H4-A2HQ-01 2 45171878 45171878 C G SIX3 Missense_Mutation p.S326R 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-H4-A2HQ-01 2 54081983 54081983 G C GPR75 5'UTR 0.11 TCGA-H4-A2HQ-01 2 71415650 71415650 T C PAIP2B Missense_Mutation p.N111D 0.12 deleterious(0.01) possibly_damaging(0.653) TCGA-H4-A2HQ-01 2 73316194 73316194 C G RAB11FIP5 Missense_Mutation p.K227N 0.18 deleterious(0) possibly_damaging(0.511) TCGA-H4-A2HQ-01 2 74900804 74900804 C T SEMA4F Missense_Mutation p.A224V 0.33 tolerated(0.06) benign(0.124) TCGA-H4-A2HQ-01 2 79347991 79347991 G T REG1A Missense_Mutation p.A2S 0.09 deleterious(0.01) benign(0.364) TCGA-H4-A2HQ-01 2 86280076 86280076 C T POLR1A Silent p.A752A 0.40 TCGA-H4-A2HQ-01 2 8822213 8822213 C T ID2 5'UTR 0.19 TCGA-H4-A2HQ-01 2 89034118 89034118 T C RPIA Missense_Mutation p.L171P 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-H4-A2HQ-01 2 89399636 89399636 C G IGKV1-16 Missense_Mutation p.D23H 0.44 deleterious(0) probably_damaging(0.953) TCGA-H4-A2HQ-01 2 96687951 96687951 G C GPAT2 Missense_Mutation p.Q782E 0.36 deleterious(0.04) benign(0.092) TCGA-H4-A2HQ-01 2 9725317 9725317 G C YWHAQ 3'UTR 0.28 TCGA-H4-A2HQ-01 3 100362453 100362453 C G GPR128 Missense_Mutation p.Q308E 0.61 deleterious(0) probably_damaging(0.996) TCGA-H4-A2HQ-01 3 112738531 112738531 G C C3orf17 5'UTR 0.20 TCGA-H4-A2HQ-01 3 113327035 113327035 G T SIDT1 Missense_Mutation p.A525S 0.16 tolerated(0.11) benign(0.084) TCGA-H4-A2HQ-01 3 119535943 119535943 C A NR1I2 Missense_Mutation p.L436I 0.33 deleterious(0) probably_damaging(0.999) TCGA-H4-A2HQ-01 3 121209029 121209029 C T POLQ Missense_Mutation p.E917K 0.47 tolerated(0.07) benign(0.04) TCGA-H4-A2HQ-01 3 124951899 124951899 C G ZNF148 Missense_Mutation p.E557D 0.15 tolerated(0.58) benign(0.008) TCGA-H4-A2HQ-01 3 130828671 130828671 C T NEK11 Nonsense_Mutation p.Q121* 0.57 TCGA-H4-A2HQ-01 3 155203300 155203300 T A PLCH1 Missense_Mutation p.E948V 0.25 deleterious(0) possibly_damaging(0.739) TCGA-H4-A2HQ-01 3 164750379 164750379 T A SI Missense_Mutation p.E889D 0.58 tolerated(0.45) benign(0) TCGA-H4-A2HQ-01 3 167183097 167183097 C G SERPINI2 Missense_Mutation p.E255Q 0.09 tolerated(0.9) possibly_damaging(0.886) TCGA-H4-A2HQ-01 3 182681826 182681826 C A DCUN1D1 Nonsense_Mutation p.E78* 0.11 TCGA-H4-A2HQ-01 3 184801154 184801154 C T C3orf70 Missense_Mutation p.D132N 0.14 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-H4-A2HQ-01 3 185798944 185798944 G C ETV5 Missense_Mutation p.P85A 0.45 tolerated(0.07) possibly_damaging(0.78) TCGA-H4-A2HQ-01 3 188327375 188327375 G A LPP Missense_Mutation p.G286R 0.10 tolerated(0.35) benign(0.136) TCGA-H4-A2HQ-01 3 23959373 23959373 A G RPL15 Missense_Mutation p.Q8R 0.36 tolerated(0.4) probably_damaging(0.915) TCGA-H4-A2HQ-01 3 25832554 25832554 C A OXSM Missense_Mutation p.R15S 0.28 tolerated_low_confidence(0.27) benign(0.001) TCGA-H4-A2HQ-01 3 27446455 27446455 C G SLC4A7 Splice_Site p.X639_splice 0.23 TCGA-H4-A2HQ-01 3 40553923 40553923 C G ZNF620 Missense_Mutation p.S61C 0.65 deleterious(0.02) benign(0.425) TCGA-H4-A2HQ-01 3 41942279 41942279 T A ULK4 Missense_Mutation p.M409L 0.22 tolerated(0.59) benign(0.002) TCGA-H4-A2HQ-01 3 41942280 41942280 C A ULK4 Missense_Mutation p.Q408H 0.22 tolerated(0.18) benign(0.001) TCGA-H4-A2HQ-01 3 424356 424356 T A CHL1 Splice_Site p.X726_splice 0.33 TCGA-H4-A2HQ-01 3 44488486 44488486 C T ZNF445 Missense_Mutation p.E893K 0.23 deleterious(0) benign(0.292) TCGA-H4-A2HQ-01 3 44763893 44763893 C T ZNF502 Silent p.F528F 0.15 TCGA-H4-A2HQ-01 3 4715070 4715070 G A ITPR1 Missense_Mutation p.D804N 0.16 deleterious(0.04) benign(0.322) TCGA-H4-A2HQ-01 3 47887268 47887268 G T DHX30 Nonsense_Mutation p.E340* 0.56 TCGA-H4-A2HQ-01 3 48612135 48612135 C A COL7A1 Missense_Mutation p.G2123V 0.16 unknown(0) TCGA-H4-A2HQ-01 3 48698069 48698069 C A CELSR3 Missense_Mutation p.G667C 0.29 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 3 49363263 49363263 G A USP4 Silent p.L126L 0.24 TCGA-H4-A2HQ-01 3 49400019 49400019 G C RHOA Missense_Mutation p.F106L 0.49 deleterious(0.03) possibly_damaging(0.689) TCGA-H4-A2HQ-01 3 51112865 51112865 T C DOCK3 Silent p.Y181Y 1.00 TCGA-H4-A2HQ-01 3 9783835 9783835 G A BRPF1 Missense_Mutation p.E661K 0.18 deleterious_low_confidence(0) benign(0.434) TCGA-H4-A2HQ-01 3 9934620 9934620 C G JAGN1 Missense_Mutation p.I37M 0.05 deleterious(0.01) benign(0.437) TCGA-H4-A2HQ-01 4 103571706 103571706 G C MANBA Missense_Mutation p.I619M 0.17 deleterious(0.01) possibly_damaging(0.827) TCGA-H4-A2HQ-01 4 123117944 123117944 A C KIAA1109 Silent p.R403R 0.29 TCGA-H4-A2HQ-01 4 157684305 157684305 G C PDGFC Silent p.T325T 0.28 TCGA-H4-A2HQ-01 4 167020652 167020652 G T TLL1 Silent p.V960V 0.24 TCGA-H4-A2HQ-01 4 169931103 169931103 G A CBR4 Silent p.L46L 0.29 TCGA-H4-A2HQ-01 4 177608517 177608517 G C VEGFC Silent p.L323L 0.28 TCGA-H4-A2HQ-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.60 deleterious(0.01) possibly_damaging(0.594) TCGA-H4-A2HQ-01 4 4199019 4199019 C G OTOP1 Missense_Mutation p.E514D 0.22 tolerated(0.54) benign(0.014) TCGA-H4-A2HQ-01 4 4314802 4314802 C G ZBTB49 Missense_Mutation p.S446C 0.29 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HQ-01 4 48106974 48106974 T C TXK Splice_Site p.X149_splice 0.34 TCGA-H4-A2HQ-01 4 494383 494383 G A PIGG Missense_Mutation p.R118Q 0.56 deleterious(0) possibly_damaging(0.668) TCGA-H4-A2HQ-01 4 5586480 5586480 G C EVC2 Missense_Mutation p.S976C 0.31 deleterious(0.03) benign(0.229) TCGA-H4-A2HQ-01 4 628477 628477 C T PDE6B Silent p.F160F 0.31 TCGA-H4-A2HQ-01 4 62849142 62849142 C A LPHN3 Missense_Mutation p.F951L 0.21 tolerated(0.1) possibly_damaging(0.781) TCGA-H4-A2HQ-01 4 83984325 83984325 G A COPS4 Missense_Mutation p.R271K 0.29 deleterious(0.01) possibly_damaging(0.874) TCGA-H4-A2HQ-01 4 87928413 87928413 G C AFF1 Intron 0.19 TCGA-H4-A2HQ-01 4 88238286 88238286 C A HSD17B13 Missense_Mutation p.E136D 0.22 tolerated(0.34) benign(0.02) TCGA-H4-A2HQ-01 4 90168856 90168856 C G GPRIN3 3'UTR 0.37 TCGA-H4-A2HQ-01 4 96761707 96761707 C T PDHA2 Silent p.L136L 0.26 TCGA-H4-A2HQ-01 5 1087072 1087072 C T SLC12A7 Silent p.L207L 0.18 TCGA-H4-A2HQ-01 5 11098851 11098851 C A CTNND2 Missense_Mutation p.V825L 0.10 deleterious(0.03) benign(0.408) TCGA-H4-A2HQ-01 5 114473227 114473227 C G TRIM36 Missense_Mutation p.L318F 0.35 deleterious(0.04) benign(0.013) TCGA-H4-A2HQ-01 5 138209627 138209627 C T LRRTM2 Missense_Mutation p.R208K 0.90 tolerated(0.89) benign(0.009) TCGA-H4-A2HQ-01 5 140052881 140052881 C T DND1 Silent p.Q39Q 0.28 TCGA-H4-A2HQ-01 5 140176232 140176232 C T PCDHA2 Silent p.N561N 0.25 TCGA-H4-A2HQ-01 5 140229336 140229336 C T PCDHA9 Missense_Mutation p.S419F 0.24 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-H4-A2HQ-01 5 140348186 140348186 C A PCDHAC2 Nonsense_Mutation p.S612* 0.36 TCGA-H4-A2HQ-01 5 140793480 140793480 C T PCDHGA10 Silent p.F246F 0.22 TCGA-H4-A2HQ-01 5 14381300 14381300 C G TRIO Missense_Mutation p.S1170C 0.34 probably_damaging(0.986) TCGA-H4-A2HQ-01 5 14387928 14387928 G C TRIO Missense_Mutation p.E1285Q 0.10 possibly_damaging(0.843) TCGA-H4-A2HQ-01 5 147015815 147015815 G A JAKMIP2 Silent p.F549F 0.27 TCGA-H4-A2HQ-01 5 156589870 156589870 G T FAM71B Missense_Mutation p.S469Y 0.85 deleterious(0.03) probably_damaging(0.999) TCGA-H4-A2HQ-01 5 16177939 16177939 G T MARCH11 Missense_Mutation p.Q197K 0.10 deleterious(0.03) probably_damaging(0.909) TCGA-H4-A2HQ-01 5 162887656 162887656 G C HMMR 5'UTR 0.29 TCGA-H4-A2HQ-01 5 167625892 167625892 A T TENM2 Missense_Mutation p.T979S 0.62 deleterious(0.04) benign(0.012) TCGA-H4-A2HQ-01 5 175875378 175875378 G A FAF2 5'UTR 0.38 TCGA-H4-A2HQ-01 5 176008383 176008383 C G CDHR2 Missense_Mutation p.L620V 0.80 deleterious(0.04) possibly_damaging(0.773) TCGA-H4-A2HQ-01 5 176304243 176304243 G A UNC5A Missense_Mutation p.E477K 0.34 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HQ-01 5 176304245 176304245 G A UNC5A Silent p.E477E 0.35 TCGA-H4-A2HQ-01 5 177468711 177468711 G A FAM153C Missense_Mutation p.E51K 0.25 deleterious_low_confidence(0.01) benign(0.096) TCGA-H4-A2HQ-01 5 21802336 21802336 A T CDH12 Missense_Mutation p.V399E 0.50 tolerated(0.32) benign(0.042) TCGA-H4-A2HQ-01 5 23526574 23526574 G A PRDM9 Silent p.R459R 0.61 TCGA-H4-A2HQ-01 5 2748596 2748596 C A IRX2 Missense_Mutation p.R409L 0.30 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-H4-A2HQ-01 5 32239280 32239280 C G MTMR12 Splice_Site p.X391_splice 0.12 TCGA-H4-A2HQ-01 5 38917668 38917668 G A OSMR Missense_Mutation p.V436I 0.11 tolerated(0.14) benign(0.091) TCGA-H4-A2HQ-01 5 40692210 40692210 C G PTGER4 Silent p.L399L 0.08 TCGA-H4-A2HQ-01 5 40843437 40843437 G C CARD6 Missense_Mutation p.R156T 0.05 deleterious(0.03) benign(0.218) TCGA-H4-A2HQ-01 5 5190099 5190099 A T ADAMTS16 Missense_Mutation p.S355C 0.09 deleterious(0) probably_damaging(0.928) TCGA-H4-A2HQ-01 5 74014165 74014165 G C HEXB Missense_Mutation p.E407Q 0.21 deleterious(0.02) possibly_damaging(0.753) TCGA-H4-A2HQ-01 5 74054712 74054712 C T GFM2 Missense_Mutation p.R89K 0.07 deleterious(0) probably_damaging(0.999) TCGA-H4-A2HQ-01 5 74990490 74990490 C T POC5 Missense_Mutation p.R227K 0.16 deleterious(0.01) benign(0.002) TCGA-H4-A2HQ-01 5 7695884 7695884 G A ADCY2 Missense_Mutation p.V297I 0.36 deleterious(0) probably_damaging(0.986) TCGA-H4-A2HQ-01 5 7867275 7867275 G C FASTKD3 Missense_Mutation p.Q308E 0.11 tolerated(0.08) possibly_damaging(0.638) TCGA-H4-A2HQ-01 5 90281315 90281315 T A GPR98 Missense_Mutation p.I6043N 0.47 probably_damaging(0.934) TCGA-H4-A2HQ-01 6 147648324 147648324 C G STXBP5 Silent p.L664L 0.33 TCGA-H4-A2HQ-01 6 159206483 159206483 C G EZR Missense_Mutation p.G109R 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-H4-A2HQ-01 6 160237614 160237614 T G PNLDC1 Missense_Mutation p.F356C 0.26 deleterious(0) probably_damaging(0.999) TCGA-H4-A2HQ-01 6 160999635 160999635 C T LPA Missense_Mutation p.R1464Q 0.32 tolerated(1) benign(0.003) TCGA-H4-A2HQ-01 6 26188994 26188994 C T HIST1H4D Silent p.%3D 0.25 TCGA-H4-A2HQ-01 6 26413833 26413833 C T BTN3A1 Silent p.F485F 0.18 TCGA-H4-A2HQ-01 6 26413848 26413848 C G BTN3A1 Missense_Mutation p.F490L 0.21 deleterious(0.01) benign(0.43) TCGA-H4-A2HQ-01 6 27778216 27778216 C A HIST1H3H Missense_Mutation p.P122H 0.10 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-H4-A2HQ-01 6 31600510 31600510 C G PRRC2A Missense_Mutation p.P1354A 0.20 unknown(0) TCGA-H4-A2HQ-01 6 31600529 31600529 G C PRRC2A Missense_Mutation p.G1360A 0.63 unknown(0) TCGA-H4-A2HQ-01 6 31625877 31625877 C A APOM 3'UTR 0.23 TCGA-H4-A2HQ-01 6 33165552 33165552 G A RXRB Silent p.G269G 0.10 TCGA-H4-A2HQ-01 6 35265694 35265694 G C DEF6 Missense_Mutation p.E21Q 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-H4-A2HQ-01 6 35471540 35471540 G A TULP1 Missense_Mutation p.R400W 0.76 deleterious(0) probably_damaging(1) TCGA-H4-A2HQ-01 6 37451064 37451064 C T CCDC167 Silent p.E64E 0.07 TCGA-H4-A2HQ-01 6 41002620 41002620 G C UNC5CL Nonsense_Mutation p.S65* 0.14 TCGA-H4-A2HQ-01 6 42902239 42902239 A C CNPY3 Missense_Mutation p.K60Q 0.25 tolerated(0.79) possibly_damaging(0.644) TCGA-H4-A2HQ-01 6 43006375 43006375 T C CUL7 Missense_Mutation p.N1583S 0.21 tolerated(0.76) benign(0.149) TCGA-H4-A2HQ-01 6 44226838 44226838 C T NFKBIE 3'UTR 0.36 TCGA-H4-A2HQ-01 6 56044893 56044893 G C COL21A1 Missense_Mutation p.I41M 0.40 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HQ-01 6 592509 592509 G C EXOC2 Silent p.L384L 0.26 TCGA-H4-A2HQ-01 6 72678707 72678707 G A RIMS1 Silent p.A62A 0.55 TCGA-H4-A2HQ-01 6 87994088 87994088 G A GJB7 Silent p.L181L 0.29 TCGA-H4-A2HQ-01 6 93965737 93965737 T C EPHA7 Missense_Mutation p.T731A 0.12 deleterious(0) benign(0.324) TCGA-H4-A2HQ-01 7 100479836 100479836 C T SRRT Silent p.F187F 0.13 TCGA-H4-A2HQ-01 7 100680758 100680758 G A MUC17 Missense_Mutation p.E2021K 0.18 unknown(0) TCGA-H4-A2HQ-01 7 105603712 105603712 G C CDHR3 5'UTR 0.20 TCGA-H4-A2HQ-01 7 112461761 112461761 T A C7orf60 3'UTR 0.16 TCGA-H4-A2HQ-01 7 115889220 115889220 A G TES Missense_Mutation p.Y87C 0.40 deleterious(0.01) possibly_damaging(0.706) TCGA-H4-A2HQ-01 7 121651654 121651654 G A PTPRZ1 Missense_Mutation p.D852N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-H4-A2HQ-01 7 128355536 128355536 C G FAM71F1 Nonsense_Mutation p.S14* 0.48 TCGA-H4-A2HQ-01 7 128359081 128359081 C G FAM71F1 Missense_Mutation p.L211V 0.55 tolerated(0.4) possibly_damaging(0.748) TCGA-H4-A2HQ-01 7 142250737 142250737 G C TRBV6-4 Missense_Mutation p.Q104E 0.19 deleterious(0.03) possibly_damaging(0.527) TCGA-H4-A2HQ-01 7 148526869 148526869 G A EZH2 Silent p.F145F 0.15 TCGA-H4-A2HQ-01 7 148526870 148526870 A T EZH2 Missense_Mutation p.F145Y 0.16 deleterious(0) possibly_damaging(0.607) TCGA-H4-A2HQ-01 7 1510264 1510264 G A INTS1 Silent p.S2174S 0.14 TCGA-H4-A2HQ-01 7 151875031 151875031 G A KMT2C Nonsense_Mutation p.Q2503* 0.14 TCGA-H4-A2HQ-01 7 22852691 22852691 T C TOMM7 3'UTR 0.49 TCGA-H4-A2HQ-01 7 23030703 23030703 C T FAM126A Missense_Mutation p.E10K 0.21 deleterious(0) probably_damaging(0.997) TCGA-H4-A2HQ-01 7 28858828 28858828 G T CREB5 Nonsense_Mutation p.E487* 0.20 TCGA-H4-A2HQ-01 7 4107520 4107520 C G SDK1 Missense_Mutation p.L988V 0.12 tolerated(0.2) benign(0.123) TCGA-H4-A2HQ-01 7 42005202 42005202 C T GLI3 Missense_Mutation p.D1157N 0.17 tolerated(0.69) benign(0.227) TCGA-H4-A2HQ-01 7 6227347 6227347 C T CYTH3 Silent p.L41L 0.18 TCGA-H4-A2HQ-01 7 6227353 6227353 C T CYTH3 Splice_Site p.X40_splice 0.18 TCGA-H4-A2HQ-01 7 66409968 66409968 G A TMEM248 Nonsense_Mutation p.W55* 0.11 TCGA-H4-A2HQ-01 7 70886021 70886021 G A WBSCR17 Missense_Mutation p.E298K 0.39 tolerated(0.26) probably_damaging(0.992) TCGA-H4-A2HQ-01 7 72413873 72413873 A G POM121 Missense_Mutation p.N849S 0.73 tolerated(1) benign(0.002) TCGA-H4-A2HQ-01 7 77549772 77549772 G C PHTF2 Missense_Mutation p.G284A 0.60 tolerated(0.39) benign(0) TCGA-H4-A2HQ-01 7 91763582 91763582 A C CYP51A1 Missense_Mutation p.L33V 0.15 tolerated(0.31) benign(0.014) TCGA-H4-A2HQ-01 7 99319922 99319922 C T CYP3A7 Nonsense_Mutation p.W72* 0.11 TCGA-H4-A2HQ-01 7 99821277 99821277 T A GATS Silent p.S152S 0.19 TCGA-H4-A2HQ-01 8 103354706 103354706 C G UBR5 Missense_Mutation p.D365H 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-H4-A2HQ-01 8 110460594 110460594 A C PKHD1L1 Missense_Mutation p.N2000T 0.10 tolerated(1) benign(0.002) TCGA-H4-A2HQ-01 8 121211724 121211724 A T COL14A1 Missense_Mutation p.I266F 0.15 deleterious(0) probably_damaging(0.978) TCGA-H4-A2HQ-01 8 124253563 124253563 G A C8orf76 Silent p.F8F 0.17 TCGA-H4-A2HQ-01 8 124392872 124392872 C G ATAD2 Missense_Mutation p.A73P 0.04 tolerated_low_confidence(0.09) benign(0.058) TCGA-H4-A2HQ-01 8 124664510 124664510 G C KLHL38 Missense_Mutation p.F219L 0.13 tolerated(0.47) benign(0.001) TCGA-H4-A2HQ-01 8 130883726 130883726 C G FAM49B Missense_Mutation p.E30D 0.14 tolerated(0.46) benign(0.012) TCGA-H4-A2HQ-01 8 133645151 133645151 G T LRRC6 Nonsense_Mutation p.S163* 0.30 TCGA-H4-A2HQ-01 8 134146952 134146952 G A TG Missense_Mutation p.E2741K 0.31 tolerated(0.11) benign(0.092) TCGA-H4-A2HQ-01 8 134251299 134251299 G C NDRG1 Missense_Mutation p.S336C 0.10 deleterious(0) probably_damaging(0.928) TCGA-H4-A2HQ-01 8 139255208 139255208 A T FAM135B Missense_Mutation p.Y216N 0.09 deleterious(0) benign(0.094) TCGA-H4-A2HQ-01 8 141712710 141712710 G C PTK2 Missense_Mutation p.H776D 0.12 tolerated(0.07) benign(0.088) TCGA-H4-A2HQ-01 8 144378379 144378379 G A ZNF696 Silent p.E178E 0.15 TCGA-H4-A2HQ-01 8 144662724 144662724 C T EEF1D Silent p.K554K 0.13 TCGA-H4-A2HQ-01 8 24304729 24304729 A T ADAM7 Missense_Mutation p.I63L 0.37 tolerated(0.44) benign(0.01) TCGA-H4-A2HQ-01 8 24324310 24324310 A C ADAM7 Splice_Site p.X130_splice 0.35 TCGA-H4-A2HQ-01 8 28420627 28420627 T G FZD3 3'UTR 0.25 TCGA-H4-A2HQ-01 8 48803019 48803019 A C PRKDC Silent p.L1289L 0.25 TCGA-H4-A2HQ-01 8 57358531 57358531 G A PENK 5'UTR 0.27 TCGA-H4-A2HQ-01 8 61655385 61655385 C A CHD7 Missense_Mutation p.S465Y 0.17 possibly_damaging(0.608) TCGA-H4-A2HQ-01 8 61735064 61735064 G A CHD7 Missense_Mutation p.R987Q 0.12 probably_damaging(0.996) TCGA-H4-A2HQ-01 8 618727 618727 C T ERICH1 Missense_Mutation p.A377T 0.38 deleterious(0.03) possibly_damaging(0.525) TCGA-H4-A2HQ-01 8 68076741 68076741 C G CSPP1 Missense_Mutation p.I937M 0.13 tolerated(0.13) benign(0.069) TCGA-H4-A2HQ-01 8 69011949 69011949 T - PREX2 Frame_Shift_Del p.F863Lfs*8 0.17 TCGA-H4-A2HQ-01 8 70536209 70536209 A G SULF1 Missense_Mutation p.T543A 0.17 tolerated(1) benign(0.02) TCGA-H4-A2HQ-01 8 70585512 70585512 G A SLCO5A1 Silent p.C713C 0.16 TCGA-H4-A2HQ-01 8 77767112 77767112 G T ZFHX4 Missense_Mutation p.W2652L 0.15 probably_damaging(0.979) TCGA-H4-A2HQ-01 8 8234441 8234441 G C SGK223 Missense_Mutation p.S493C 0.29 probably_damaging(0.993) TCGA-H4-A2HQ-01 8 88885180 88885180 G A DCAF4L2 Silent p.I340I 0.11 TCGA-H4-A2HQ-01 8 92301462 92301462 C A SLC26A7 Missense_Mutation p.H98N 0.09 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HQ-01 8 95508024 95508024 G A KIAA1429 Silent p.L1493L 0.11 TCGA-H4-A2HQ-01 9 111745534 111745534 C T CTNNAL1 Missense_Mutation p.R264H 0.18 deleterious(0.04) probably_damaging(1) TCGA-H4-A2HQ-01 9 112642957 112642957 C A PALM2-AKAP2 Missense_Mutation p.Q85K 0.59 tolerated(0.25) possibly_damaging(0.486) TCGA-H4-A2HQ-01 9 114304279 114304279 G C ZNF483 Missense_Mutation p.G355A 0.93 tolerated(0.12) possibly_damaging(0.794) TCGA-H4-A2HQ-01 9 116931301 116931301 C T COL27A1 Missense_Mutation p.S489L 0.40 unknown(0) TCGA-H4-A2HQ-01 9 117668133 117668133 G C TNFSF8 Missense_Mutation p.F95L 0.20 tolerated(0.43) benign(0.01) TCGA-H4-A2HQ-01 9 117668170 117668170 G A TNFSF8 Missense_Mutation p.S83L 0.18 tolerated(0.12) probably_damaging(0.997) TCGA-H4-A2HQ-01 9 117800543 117800543 T C TNC Missense_Mutation p.K1837E 0.46 tolerated(0.79) benign(0.155) TCGA-H4-A2HQ-01 9 131020315 131020315 C A GOLGA2 Missense_Mutation p.D791Y 0.39 deleterious(0) possibly_damaging(0.673) TCGA-H4-A2HQ-01 9 131504994 131504994 T C ZER1 Missense_Mutation p.N464D 0.16 tolerated(0.2) possibly_damaging(0.63) TCGA-H4-A2HQ-01 9 132637006 132637006 C T USP20 Missense_Mutation p.S631L 0.34 deleterious(0) possibly_damaging(0.71) TCGA-H4-A2HQ-01 9 133346289 133346289 C G ASS1 Missense_Mutation p.I188M 0.90 deleterious(0) probably_damaging(0.97) TCGA-H4-A2HQ-01 9 139937556 139937556 C T NPDC1 Intron 0.49 TCGA-H4-A2HQ-01 9 37735728 37735728 C T FRMPD1 Silent p.V466V 0.93 TCGA-H4-A2HQ-01 9 90534106 90534106 G T SPATA31C1 Intron 0.19 TCGA-H4-A2HQ-01 9 90535926 90535926 A C SPATA31C1 RNA 0.34 TCGA-H4-A2HQ-01 X 100382569 100382569 C G CENPI Missense_Mutation p.S330C 0.09 tolerated(0.16) benign(0.06) TCGA-H4-A2HQ-01 X 105882904 105882904 C A CXorf57 Nonsense_Mutation p.S574* 0.33 TCGA-H4-A2HQ-01 X 114869355 114869355 G C PLS3 Missense_Mutation p.E249Q 0.34 deleterious(0.04) possibly_damaging(0.514) TCGA-H4-A2HQ-01 X 123189994 123189996 CTC TT STAG2 Frame_Shift_Del p.T406Lfs*19 0.45 TCGA-H4-A2HQ-01 X 14038306 14038306 C G GEMIN8 Missense_Mutation p.E121D 0.83 tolerated(0.23) benign(0.126) TCGA-H4-A2HQ-01 X 140985120 140985120 G A MAGEC3 Missense_Mutation p.E526K 0.34 tolerated(0.05) possibly_damaging(0.781) TCGA-H4-A2HQ-01 X 149767125 149767125 G A MTM1 Missense_Mutation p.R69H 0.35 deleterious(0) probably_damaging(0.983) TCGA-H4-A2HQ-01 X 153034400 153034400 C G PLXNB3 Intron 0.31 TCGA-H4-A2HQ-01 X 16859890 16859890 G C TXLNG 3'UTR 0.31 TCGA-H4-A2HQ-01 X 19021018 19021018 C A GPR64 Missense_Mutation p.V726L 0.43 deleterious(0) probably_damaging(0.998) TCGA-H4-A2HQ-01 X 32429985 32429985 G T DMD Missense_Mutation p.Q1373K 0.44 benign(0.34) TCGA-H4-A2HQ-01 X 65824270 65824270 C T EDA2R Silent p.E115E 0.30 TCGA-H4-A2HQ-01 X 77224638 77224638 G A PGAM4 Silent p.F166F 0.43 TCGA-H4-A2HQ-01 X 9864156 9864156 C G SHROOM2 Silent p.P736P 0.45 TCGA-HQ-A2OE-01 10 104123535 104123535 G A GBF1 Missense_Mutation p.E695K 0.20 tolerated(0.64) benign(0.002) TCGA-HQ-A2OE-01 10 105912421 105912421 C T WDR96 Missense_Mutation p.E1202K 0.11 tolerated(0.16) benign(0.059) TCGA-HQ-A2OE-01 10 115962010 115962010 G A TDRD1 Missense_Mutation p.E217K 0.30 tolerated(0.09) benign(0.006) TCGA-HQ-A2OE-01 10 129536033 129536033 G A FOXI2 Missense_Mutation p.D166N 0.15 deleterious(0.03) benign(0.013) TCGA-HQ-A2OE-01 10 133769275 133769275 G C PPP2R2D Missense_Mutation p.E359D 0.28 tolerated(0.21) benign(0.004) TCGA-HQ-A2OE-01 10 14977537 14977537 G C DCLRE1C Missense_Mutation p.T130S 0.13 deleterious(0.01) probably_damaging(0.963) TCGA-HQ-A2OE-01 10 15639284 15639301 CAGTGGTCGAAATCCCTA - ITGA8 Splice_Site p.X707_splice 0.30 TCGA-HQ-A2OE-01 10 35819118 35819118 C T CCNY Missense_Mutation p.R176W 0.29 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 10 50227712 50227712 C T VSTM4 Missense_Mutation p.E316K 0.23 tolerated(0.09) benign(0.192) TCGA-HQ-A2OE-01 10 68979430 68979430 G A CTNNA3 Nonsense_Mutation p.Q260* 0.04 TCGA-HQ-A2OE-01 10 75013740 75013740 G C TTC18 Missense_Mutation p.S1120C 0.20 tolerated(0.1) probably_damaging(0.995) TCGA-HQ-A2OE-01 10 7816818 7816818 G A KIN Missense_Mutation p.S215F 0.16 tolerated(0.07) benign(0.021) TCGA-HQ-A2OE-01 11 122795698 122795698 C T C11orf63 Nonsense_Mutation p.Q320* 0.77 TCGA-HQ-A2OE-01 11 36614207 36614207 G T RAG2 Silent p.S504S 0.27 TCGA-HQ-A2OE-01 11 47741610 47741610 G C FNBP4 Missense_Mutation p.S945C 0.33 deleterious(0) probably_damaging(0.998) TCGA-HQ-A2OE-01 11 5411026 5411026 A T OR51M1 Missense_Mutation p.D133V 0.05 deleterious(0) probably_damaging(0.999) TCGA-HQ-A2OE-01 11 55587183 55587183 C G OR5D18 Silent p.V26V 0.21 TCGA-HQ-A2OE-01 11 56085825 56085825 A T OR8K3 Missense_Mutation p.T15S 0.06 deleterious_low_confidence(0) benign(0.014) TCGA-HQ-A2OE-01 11 63585488 63585488 G C C11orf84 Missense_Mutation p.Q113H 0.16 tolerated(0.08) probably_damaging(0.957) TCGA-HQ-A2OE-01 11 6704532 6704532 C T MRPL17 5'UTR 0.30 TCGA-HQ-A2OE-01 11 67168200 67168200 C G PPP1CA Missense_Mutation p.E137D 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-HQ-A2OE-01 11 74556166 74556166 C A XRRA1 Nonsense_Mutation p.E619* 0.29 TCGA-HQ-A2OE-01 12 102020652 102020652 G A MYBPC1 Intron 0.15 TCGA-HQ-A2OE-01 12 10854593 10854593 C T YBX3 Missense_Mutation p.R340H 0.36 deleterious(0.05) probably_damaging(0.996) TCGA-HQ-A2OE-01 12 109625935 109625935 C G ACACB Missense_Mutation p.F704L 0.15 deleterious(0) benign(0.167) TCGA-HQ-A2OE-01 12 120565654 120565654 C T GCN1L1 Silent p.%3D 0.11 TCGA-HQ-A2OE-01 12 123001882 123001882 G A RSRC2 Missense_Mutation p.S165L 0.10 tolerated_low_confidence(0.38) unknown(0) TCGA-HQ-A2OE-01 12 123950235 123950235 C T SNRNP35 Missense_Mutation p.L55F 0.15 tolerated(0.57) benign(0.12) TCGA-HQ-A2OE-01 12 125473494 125473494 G A DHX37 Silent p.P25P 0.46 TCGA-HQ-A2OE-01 12 32136551 32136551 G C KIAA1551 Missense_Mutation p.D888H 0.40 deleterious(0.05) probably_damaging(0.979) TCGA-HQ-A2OE-01 12 32955491 32955491 C A PKP2 Splice_Site p.X716_splice 0.13 TCGA-HQ-A2OE-01 12 50149478 50149478 C T TMBIM6 Missense_Mutation p.H134Y 0.12 tolerated(0.24) probably_damaging(0.986) TCGA-HQ-A2OE-01 12 50571472 50571472 G C LIMA1 Nonsense_Mutation p.S553* 0.14 TCGA-HQ-A2OE-01 12 56482341 56482341 G T ERBB3 Missense_Mutation p.D297Y 0.40 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 12 56865968 56865968 G C GLS2 Nonsense_Mutation p.S508* 0.40 TCGA-HQ-A2OE-01 12 6161750 6161750 G C VWF Missense_Mutation p.I715M 0.45 deleterious(0) benign(0.178) TCGA-HQ-A2OE-01 12 69127366 69127366 G T NUP107 Nonsense_Mutation p.E746* 0.05 TCGA-HQ-A2OE-01 12 6958994 6958994 C T CDCA3 Silent p.L93L 0.15 TCGA-HQ-A2OE-01 12 70824480 70824480 C G KCNMB4 3'UTR 0.13 TCGA-HQ-A2OE-01 12 7177163 7177163 T A C1S Nonsense_Mutation p.C425* 0.14 TCGA-HQ-A2OE-01 12 81675058 81675058 T C PPFIA2 Missense_Mutation p.K1064E 0.27 deleterious(0.01) probably_damaging(0.921) TCGA-HQ-A2OE-01 13 114174928 114174928 C G TMCO3 Intron 0.28 TCGA-HQ-A2OE-01 13 37012218 37012218 G A CCNA1 Missense_Mutation p.V187I 0.38 tolerated(0.09) possibly_damaging(0.804) TCGA-HQ-A2OE-01 14 105409421 105409421 C T AHNAK2 Missense_Mutation p.D4123N 0.27 benign(0.139) TCGA-HQ-A2OE-01 14 20389081 20389081 C A OR4K5 Missense_Mutation p.L106I 0.27 tolerated(0.12) possibly_damaging(0.481) TCGA-HQ-A2OE-01 14 24520155 24520155 G C LRRC16B 5'Flank 0.29 TCGA-HQ-A2OE-01 14 39545169 39545169 G C SEC23A Missense_Mutation p.D319E 0.20 deleterious(0.05) benign(0.219) TCGA-HQ-A2OE-01 15 23889145 23889145 G C MAGEL2 Missense_Mutation p.R646G 0.32 deleterious_low_confidence(0.01) benign(0.129) TCGA-HQ-A2OE-01 15 23890799 23890799 G C MAGEL2 Silent p.P94P 0.20 TCGA-HQ-A2OE-01 15 25321130 25321130 G T SNORD116-11 RNA 0.15 TCGA-HQ-A2OE-01 15 29091374 29091374 G A GOLGA6L7P RNA 0.30 TCGA-HQ-A2OE-01 15 42439886 42439886 C A PLA2G4F Silent p.G378G 0.25 TCGA-HQ-A2OE-01 15 45270712 45270712 G C C15orf43 Missense_Mutation p.K183N 0.19 tolerated(0.05) possibly_damaging(0.894) TCGA-HQ-A2OE-01 15 45454121 45454121 G C DUOX1 Missense_Mutation p.E1348Q 0.27 deleterious(0.02) benign(0.196) TCGA-HQ-A2OE-01 15 55919293 55919293 G C PRTG Nonsense_Mutation p.S947* 0.13 TCGA-HQ-A2OE-01 15 63569782 63569782 C T APH1B 5'UTR 0.39 TCGA-HQ-A2OE-01 15 65447318 65447318 G A CLPX Silent p.D471D 0.37 TCGA-HQ-A2OE-01 15 79749968 79749968 T C KIAA1024 Silent p.S493S 0.24 TCGA-HQ-A2OE-01 15 81199027 81199027 G C KIAA1199 Missense_Mutation p.G479R 0.30 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 15 90272286 90272286 G A WDR93 Missense_Mutation p.C362Y 0.28 tolerated(1) benign(0.267) TCGA-HQ-A2OE-01 15 90972827 90972827 G A IQGAP1 Missense_Mutation p.G107S 0.32 deleterious(0.03) probably_damaging(0.966) TCGA-HQ-A2OE-01 16 10775971 10775971 C T TEKT5 Missense_Mutation p.V248M 0.45 deleterious(0.03) benign(0.005) TCGA-HQ-A2OE-01 16 1388576 1388576 G A BAIAP3 Missense_Mutation p.S44N 0.81 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-HQ-A2OE-01 16 3339613 3339613 G A ZNF263 Silent p.P369P 0.38 TCGA-HQ-A2OE-01 16 50109505 50109505 G A HEATR3 Missense_Mutation p.E216K 0.36 deleterious(0.04) possibly_damaging(0.743) TCGA-HQ-A2OE-01 16 66757722 66757722 T C DYNC1LI2 Missense_Mutation p.Q461R 0.32 tolerated(0.1) probably_damaging(0.996) TCGA-HQ-A2OE-01 16 87364973 87364973 G A FBXO31 Missense_Mutation p.A514V 0.26 tolerated(0.29) benign(0.003) TCGA-HQ-A2OE-01 16 89724678 89724678 C T SPATA33 Silent p.S19S 0.19 TCGA-HQ-A2OE-01 17 11648245 11648245 G A DNAH9 Silent p.K2081K 0.57 TCGA-HQ-A2OE-01 17 26945872 26945872 C G KIAA0100 Silent p.L1920L 0.06 TCGA-HQ-A2OE-01 17 43215296 43215296 G A ACBD4 Missense_Mutation p.G210R 0.10 tolerated_low_confidence(1) benign(0) TCGA-HQ-A2OE-01 17 66270122 66270122 C T SLC16A6 Missense_Mutation p.A108T 0.18 tolerated(0.69) possibly_damaging(0.892) TCGA-HQ-A2OE-01 17 70119895 70119895 G A SOX9 Silent p.P299P 0.18 TCGA-HQ-A2OE-01 17 74073059 74073059 G A GALR2 Missense_Mutation p.M237I 0.56 deleterious(0.01) possibly_damaging(0.74) TCGA-HQ-A2OE-01 19 10624779 10624779 G A S1PR5 Silent p.P303P 0.23 TCGA-HQ-A2OE-01 19 11031350 11031350 C T CARM1 Silent p.I450I 0.23 TCGA-HQ-A2OE-01 19 11526625 11526625 G A RGL3 Nonsense_Mutation p.Q209* 0.42 TCGA-HQ-A2OE-01 19 12243475 12243475 T C ZNF20 Missense_Mutation p.K509R 0.43 deleterious(0.01) possibly_damaging(0.568) TCGA-HQ-A2OE-01 19 18896513 18896513 C T COMP Silent p.Q546Q 0.13 TCGA-HQ-A2OE-01 19 40909734 40909734 C T PRX Silent p.V21V 0.21 TCGA-HQ-A2OE-01 19 49247707 49247707 C T IZUMO1 Intron 0.47 TCGA-HQ-A2OE-01 19 51329977 51329977 C G KLK15 Missense_Mutation p.S173T 0.15 tolerated(0.28) possibly_damaging(0.893) TCGA-HQ-A2OE-01 19 55450851 55450851 G A NLRP7 Missense_Mutation p.R446C 0.24 tolerated(0.22) benign(0.029) TCGA-HQ-A2OE-01 19 56424636 56424636 T A NLRP13 Missense_Mutation p.N183Y 0.13 deleterious(0) benign(0.123) TCGA-HQ-A2OE-01 19 6468350 6468350 C G DENND1C Missense_Mutation p.E562D 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-HQ-A2OE-01 1 109806339 109806339 C T CELSR2 Silent p.R1647R 0.28 TCGA-HQ-A2OE-01 1 112269937 112269937 C G FAM212B Missense_Mutation p.E183Q 0.56 deleterious(0.01) possibly_damaging(0.849) TCGA-HQ-A2OE-01 1 13669007 13669007 C G PRAMEF14 Silent p.L441L 0.28 TCGA-HQ-A2OE-01 1 144923816 144923816 C A PDE4DIP Missense_Mutation p.M214I 0.09 tolerated(0.14) benign(0.005) TCGA-HQ-A2OE-01 1 151260360 151260360 C T ZNF687 Silent p.T531T 0.16 TCGA-HQ-A2OE-01 1 156339062 156339074 GCCGCGGGCCGGC T RHBG Nonsense_Mutation p.A8_R12delins* 0.18 TCGA-HQ-A2OE-01 1 159557901 159557901 G C APCS Silent p.G25G 0.19 TCGA-HQ-A2OE-01 1 161046208 161046208 C G PVRL4 Missense_Mutation p.R263T 0.39 tolerated(0.15) benign(0.017) TCGA-HQ-A2OE-01 1 161480706 161480706 T A FCGR2A Silent p.A234A 0.18 TCGA-HQ-A2OE-01 1 170511708 170511708 C G GORAB Missense_Mutation p.L191V 0.19 deleterious(0.01) benign(0.187) TCGA-HQ-A2OE-01 1 185269586 185269586 G C IVNS1ABP Missense_Mutation p.Q409E 0.14 tolerated(0.23) benign(0.18) TCGA-HQ-A2OE-01 1 207014389 207014389 A T IL19 Missense_Mutation p.N173I 0.29 tolerated(0.06) probably_damaging(0.964) TCGA-HQ-A2OE-01 1 243328008 243328008 G A CEP170 Missense_Mutation p.S1085L 0.08 deleterious(0.01) benign(0.001) TCGA-HQ-A2OE-01 1 248487560 248487560 T C OR2M7 Missense_Mutation p.Y104C 0.46 deleterious(0.05) benign(0.062) TCGA-HQ-A2OE-01 1 32678173 32678173 G A DCDC2B Missense_Mutation p.E204K 0.26 tolerated(0.36) possibly_damaging(0.452) TCGA-HQ-A2OE-01 1 33354707 33354707 C T HPCA Missense_Mutation p.R70C 0.24 deleterious(0) probably_damaging(0.999) TCGA-HQ-A2OE-01 1 39851577 39851577 C T MACF1 Missense_Mutation p.L2712F 0.32 possibly_damaging(0.781) TCGA-HQ-A2OE-01 1 54060263 54060263 G A GLIS1 Missense_Mutation p.R105W 0.25 deleterious(0) possibly_damaging(0.781) TCGA-HQ-A2OE-01 1 74507362 74507362 C T LRRIQ3 Missense_Mutation p.R418Q 0.28 tolerated(1) benign(0) TCGA-HQ-A2OE-01 1 82436188 82436188 T C LPHN2 Missense_Mutation p.I958T 0.22 deleterious(0) possibly_damaging(0.46) TCGA-HQ-A2OE-01 20 30674544 30674544 C T HCK Silent p.L317L 0.82 TCGA-HQ-A2OE-01 20 33442618 33442618 G A GGT7 Missense_Mutation p.A404V 0.06 tolerated(0.17) benign(0.004) TCGA-HQ-A2OE-01 20 43133481 43133481 T C SERINC3 Missense_Mutation p.T279A 0.12 deleterious(0.02) possibly_damaging(0.868) TCGA-HQ-A2OE-01 20 43929794 43929794 C A MATN4 Silent p.R279R 0.13 TCGA-HQ-A2OE-01 20 48807640 48807640 A G CEBPB Missense_Mutation p.M24V 0.09 deleterious(0) possibly_damaging(0.678) TCGA-HQ-A2OE-01 20 60706547 60706547 C T LSM14B Missense_Mutation p.S324F 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-HQ-A2OE-01 20 61458604 61458604 C T COL9A3 Silent p.G268G 0.11 TCGA-HQ-A2OE-01 21 30380277 30380277 C A RWDD2B Missense_Mutation p.G177V 0.26 tolerated(0.24) benign(0.005) TCGA-HQ-A2OE-01 21 46314945 46314945 C T ITGB2 Missense_Mutation p.V342M 0.38 deleterious(0) possibly_damaging(0.878) TCGA-HQ-A2OE-01 22 21224644 21224644 G C SNAP29 Missense_Mutation p.G86A 0.15 tolerated(0.23) probably_damaging(0.969) TCGA-HQ-A2OE-01 22 30858094 30858094 C T SEC14L3 Silent p.G250G 0.12 TCGA-HQ-A2OE-01 2 131520501 131520501 G A AMER3 Missense_Mutation p.G286S 0.24 deleterious(0.03) possibly_damaging(0.822) TCGA-HQ-A2OE-01 2 152394482 152394482 G T NEB Nonsense_Mutation p.Y7002* 0.45 TCGA-HQ-A2OE-01 2 178936789 178936789 C G PDE11A Missense_Mutation p.A126P 0.04 deleterious(0.01) possibly_damaging(0.908) TCGA-HQ-A2OE-01 2 179457374 179457374 C T TTN Silent p.L19786L 0.43 TCGA-HQ-A2OE-01 2 185803315 185803315 G A ZNF804A Silent p.K1064K 0.32 TCGA-HQ-A2OE-01 2 242046892 242046892 C T PASK Silent p.G1237G 0.31 TCGA-HQ-A2OE-01 2 24299101 24299101 T C SF3B14 5'UTR 0.03 TCGA-HQ-A2OE-01 2 45789849 45789849 T A SRBD1 Missense_Mutation p.K451M 0.15 deleterious(0) probably_damaging(0.933) TCGA-HQ-A2OE-01 2 69172457 69172457 G A GKN2 3'UTR 0.08 TCGA-HQ-A2OE-01 3 100963595 100963595 G C IMPG2 Missense_Mutation p.S527C 0.26 deleterious(0.02) possibly_damaging(0.789) TCGA-HQ-A2OE-01 3 119306813 119306813 C G ADPRH 3'UTR 0.16 TCGA-HQ-A2OE-01 3 123383093 123383093 C A MYLK Nonsense_Mutation p.E1282* 0.15 TCGA-HQ-A2OE-01 3 133293897 133293897 G C CDV3 Missense_Mutation p.W85C 0.33 deleterious(0) probably_damaging(0.999) TCGA-HQ-A2OE-01 3 133293922 133293922 G C CDV3 Missense_Mutation p.D94H 0.38 deleterious(0) probably_damaging(0.983) TCGA-HQ-A2OE-01 3 148847538 148847538 T C HPS3 Missense_Mutation p.F10L 0.23 deleterious(0) probably_damaging(0.916) TCGA-HQ-A2OE-01 3 17052785 17052785 T C PLCL2 Silent p.N523N 0.18 TCGA-HQ-A2OE-01 3 41266097 41266097 G C CTNNB1 Missense_Mutation p.D32H 0.16 deleterious(0) probably_damaging(0.988) TCGA-HQ-A2OE-01 3 42678866 42678866 C T NKTR Missense_Mutation p.S557F 0.17 deleterious_low_confidence(0) unknown(0) TCGA-HQ-A2OE-01 3 42917227 42917227 G A CYP8B1 Missense_Mutation p.R28C 0.12 deleterious(0) possibly_damaging(0.87) TCGA-HQ-A2OE-01 3 44867652 44867652 G C KIF15 Missense_Mutation p.E891Q 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-HQ-A2OE-01 3 50231561 50231561 G C GNAT1 Missense_Mutation p.K205N 0.45 deleterious(0) possibly_damaging(0.64) TCGA-HQ-A2OE-01 3 52436687 52436687 C G BAP1 Missense_Mutation p.D663H 0.92 deleterious(0) probably_damaging(0.999) TCGA-HQ-A2OE-01 3 52436810 52436810 C G BAP1 Missense_Mutation p.K656N 0.80 deleterious(0) probably_damaging(0.999) TCGA-HQ-A2OE-01 3 52442487 52442487 G T BAP1 Intron 0.82 TCGA-HQ-A2OE-01 3 64666970 64666970 C T ADAMTS9 Missense_Mutation p.D196N 0.77 tolerated(0.51) benign(0.003) TCGA-HQ-A2OE-01 3 9781381 9781381 G A BRPF1 Missense_Mutation p.G433D 0.10 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 4 156850813 156850813 G T CTSO Missense_Mutation p.P240H 0.27 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 4 82027076 82027076 C T PRKG2 Missense_Mutation p.G652R 0.24 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 4 84193256 84193256 C T COQ2 Nonsense_Mutation p.W254* 0.47 TCGA-HQ-A2OE-01 4 88414989 88414989 G A SPARCL1 Silent p.L321L 0.18 TCGA-HQ-A2OE-01 5 101735415 101735415 C A SLCO6A1 Missense_Mutation p.G553V 0.47 deleterious(0) probably_damaging(0.995) TCGA-HQ-A2OE-01 5 110407578 110407578 G T TSLP 5'UTR 0.39 TCGA-HQ-A2OE-01 5 126784798 126784799 - CAAT MEGF10 Frame_Shift_Ins p.L958Sfs*7 0.39 TCGA-HQ-A2OE-01 5 126860380 126860381 - A PRRC1 Frame_Shift_Ins p.T88Nfs*17 0.31 TCGA-HQ-A2OE-01 5 134086448 134086448 G C CAMLG Splice_Site p.X234_splice 0.32 TCGA-HQ-A2OE-01 5 140536962 140536962 C A PCDHB17 Silent p.R462R 0.26 TCGA-HQ-A2OE-01 5 170883752 170883752 C T FGF18 Silent p.F189F 0.84 TCGA-HQ-A2OE-01 5 33937235 33937235 G A RXFP3 Silent p.Q130Q 0.04 TCGA-HQ-A2OE-01 5 40692405 40692408 GCCT - PTGER4 Frame_Shift_Del p.A466Lfs*15 0.22 TCGA-HQ-A2OE-01 5 64081347 64081347 G C CWC27 Missense_Mutation p.E146Q 0.38 deleterious(0.02) possibly_damaging(0.471) TCGA-HQ-A2OE-01 6 129687390 129687390 C G LAMA2 Missense_Mutation p.L1582V 0.49 deleterious(0) probably_damaging(0.998) TCGA-HQ-A2OE-01 6 130465664 130465664 A G SAMD3 3'UTR 0.40 TCGA-HQ-A2OE-01 6 13185076 13185076 C G PHACTR1 Missense_Mutation p.S123C 0.38 deleterious(0.04) probably_damaging(0.971) TCGA-HQ-A2OE-01 6 131905126 131905126 T C ARG1 3'UTR 0.70 TCGA-HQ-A2OE-01 6 133105152 133105152 C A SLC18B1 Missense_Mutation p.G193V 0.32 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 6 139113917 139113917 G A CCDC28A Missense_Mutation p.V268I 0.19 tolerated_low_confidence(0.14) benign(0.031) TCGA-HQ-A2OE-01 6 31322894 31322894 C T HLA-B Silent p.R334R 0.11 TCGA-HQ-A2OE-01 6 33136782 33136782 G C COL11A2 Missense_Mutation p.P1182A 0.34 unknown(0) TCGA-HQ-A2OE-01 6 42893345 42893345 C G PTCRA Silent p.L257L 0.46 TCGA-HQ-A2OE-01 6 44221102 44221102 C G HSP90AB1 Missense_Mutation p.I684M 0.24 deleterious(0.02) benign(0.036) TCGA-HQ-A2OE-01 7 117375046 117375046 C T CTTNBP2 Missense_Mutation p.R1266H 0.23 deleterious(0) possibly_damaging(0.709) TCGA-HQ-A2OE-01 7 23682709 23682709 C T CCDC126 Missense_Mutation p.T133M 0.30 deleterious_low_confidence(0.04) benign(0.036) TCGA-HQ-A2OE-01 7 47408747 47408747 G A TNS3 Missense_Mutation p.S499L 0.15 tolerated(0.57) benign(0.081) TCGA-HQ-A2OE-01 7 53104067 53104067 C T POM121L12 Missense_Mutation p.P235S 0.19 tolerated(0.1) probably_damaging(0.932) TCGA-HQ-A2OE-01 7 56088853 56088853 C A PSPH Missense_Mutation p.C18F 0.16 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 7 73011529 73011529 G C MLXIPL Missense_Mutation p.T529R 0.20 deleterious(0) possibly_damaging(0.623) TCGA-HQ-A2OE-01 7 73097749 73097749 G T DNAJC30 Missense_Mutation p.A2E 0.15 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-HQ-A2OE-01 7 88966018 88966018 C T ZNF804B Missense_Mutation p.A1241V 0.25 deleterious(0.01) benign(0.015) TCGA-HQ-A2OE-01 7 91981821 91981821 G A ANKIB1 Nonsense_Mutation p.W421* 0.16 TCGA-HQ-A2OE-01 7 91981845 91981845 G C ANKIB1 Missense_Mutation p.R429T 0.24 deleterious(0.01) probably_damaging(0.948) TCGA-HQ-A2OE-01 8 38275486 38275486 C G FGFR1 Missense_Mutation p.G516A 0.64 deleterious(0.02) possibly_damaging(0.893) TCGA-HQ-A2OE-01 8 6912954 6912954 C T DEFA5 Silent p.%3D 0.50 TCGA-HQ-A2OE-01 8 72756080 72756080 C A MSC Missense_Mutation p.A112S 0.31 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 8 76468215 76468215 A T HNF4G Splice_Site p.X206_splice 0.38 TCGA-HQ-A2OE-01 8 82592977 82592977 C A IMPA1 Silent p.L94L 0.16 TCGA-HQ-A2OE-01 9 127781102 127781102 G A SCAI Silent p.L302L 0.41 TCGA-HQ-A2OE-01 9 140379137 140379137 G A PNPLA7 Missense_Mutation p.P750L 0.21 tolerated(0.06) benign(0.046) TCGA-HQ-A2OE-01 9 140481554 140481554 C T ZMYND19 Missense_Mutation p.R75Q 0.14 deleterious(0.02) benign(0.434) TCGA-HQ-A2OE-01 9 37842171 37842171 T C DCAF10 Missense_Mutation p.C247R 0.42 tolerated(0.9) probably_damaging(0.998) TCGA-HQ-A2OE-01 9 95036780 95036780 A G IARS Silent p.T306T 0.11 TCGA-HQ-A2OE-01 X 101970046 101970046 T G GPRASP2 Silent p.G83G 0.06 TCGA-HQ-A2OE-01 X 130409595 130409595 C A IGSF1 Missense_Mutation p.W1019L 0.14 tolerated(0.15) probably_damaging(0.999) TCGA-HQ-A2OE-01 X 1471230 1471230 C G IL3RA Nonsense_Mutation p.Y149* 0.09 TCGA-HQ-A2OE-01 X 153880682 153880682 C G CTAG2 Missense_Mutation p.A165P 0.82 deleterious_low_confidence(0) unknown(0) TCGA-HQ-A2OE-01 X 153880694 153880694 C T CTAG2 Missense_Mutation p.E161K 0.81 tolerated_low_confidence(0.15) unknown(0) TCGA-HQ-A2OE-01 X 32503148 32503148 C T DMD Silent p.L897L 0.18 TCGA-HQ-A2OE-01 X 48547079 48547079 G C WAS Missense_Mutation p.R321P 0.14 tolerated(0.17) probably_damaging(0.995) TCGA-HQ-A2OE-01 X 52825442 52825442 G A SPANXN5 3'UTR 0.93 TCGA-HQ-A2OE-01 X 53247478 53247478 C T KDM5C Missense_Mutation p.D111N 0.16 deleterious(0) probably_damaging(1) TCGA-HQ-A2OE-01 X 63548760 63548760 G A MTMR8 Missense_Mutation p.S458F 0.50 deleterious(0) probably_damaging(0.998) TCGA-HQ-A2OE-01 X 89177629 89177629 A T TGIF2LX Missense_Mutation p.K182M 0.23 tolerated(0.08) benign(0.237) TCGA-HQ-A2OF-01 10 64975088 64975088 G C JMJD1C Nonsense_Mutation p.S317* 0.44 TCGA-HQ-A2OF-01 11 100998779 100998779 C T PGR Silent p.P341P 0.49 TCGA-HQ-A2OF-01 11 18956124 18956124 C T MRGPRX1 Missense_Mutation p.A70T 0.28 tolerated(0.05) benign(0.149) TCGA-HQ-A2OF-01 11 2189113 2189113 G A TH Silent p.I240I 0.25 TCGA-HQ-A2OF-01 11 46406976 46406976 C T CHRM4 Missense_Mutation p.A378T 0.62 tolerated(0.21) possibly_damaging(0.643) TCGA-HQ-A2OF-01 11 57077452 57077452 C T TNKS1BP1 Silent p.K911K 0.51 TCGA-HQ-A2OF-01 11 65387122 65387122 C T PCNXL3 Missense_Mutation p.S607L 0.18 deleterious(0.04) probably_damaging(0.973) TCGA-HQ-A2OF-01 11 67177176 67177176 C T TBC1D10C Missense_Mutation p.P431L 0.46 deleterious_low_confidence(0.02) benign(0.084) TCGA-HQ-A2OF-01 11 7064538 7064538 G T NLRP14 Silent p.L427L 0.57 TCGA-HQ-A2OF-01 11 89402621 89402621 C T FOLH1B RNA 0.36 TCGA-HQ-A2OF-01 12 42862456 42862456 A T PRICKLE1 Missense_Mutation p.L187H 0.16 deleterious(0) probably_damaging(0.996) TCGA-HQ-A2OF-01 12 57345829 57345829 G C RDH16 Missense_Mutation p.P313R 0.69 deleterious(0.01) probably_damaging(0.97) TCGA-HQ-A2OF-01 12 6424295 6424305 CCATCGAGAAG - PLEKHG6 Frame_Shift_Del p.T140Ifs*42 0.18 TCGA-HQ-A2OF-01 12 72866866 72866866 C T TRHDE Missense_Mutation p.T452M 0.55 deleterious(0) probably_damaging(0.975) TCGA-HQ-A2OF-01 12 83290125 83290125 G T TMTC2 Missense_Mutation p.V395F 0.90 tolerated(0.06) benign(0.008) TCGA-HQ-A2OF-01 13 103492102 103492102 C T BIVM-ERCC5 Missense_Mutation p.R439W 0.30 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-HQ-A2OF-01 14 21463349 21463349 C G METTL17 Missense_Mutation p.A301G 0.35 tolerated(0.06) benign(0.373) TCGA-HQ-A2OF-01 14 24045163 24045163 G A JPH4 Silent p.F294F 0.12 TCGA-HQ-A2OF-01 14 52156598 52156598 G A FRMD6 Missense_Mutation p.R15H 0.30 tolerated(0.54) probably_damaging(0.999) TCGA-HQ-A2OF-01 14 89131789 89131789 C T EML5 Missense_Mutation p.V1057I 0.50 tolerated(0.11) possibly_damaging(0.867) TCGA-HQ-A2OF-01 15 26793076 26793076 C T GABRB3 Missense_Mutation p.R429Q 0.71 tolerated(0.16) benign(0.046) TCGA-HQ-A2OF-01 15 29346111 29346111 C T APBA2 Silent p.S8S 0.25 TCGA-HQ-A2OF-01 15 65772705 65772705 G A DPP8 Missense_Mutation p.T400I 0.62 deleterious(0.01) probably_damaging(0.95) TCGA-HQ-A2OF-01 15 75111553 75111553 C T LMAN1L Missense_Mutation p.P220S 0.27 tolerated(0.11) possibly_damaging(0.467) TCGA-HQ-A2OF-01 15 80762743 80762743 G A ARNT2 Missense_Mutation p.A127T 0.17 tolerated(1) possibly_damaging(0.499) TCGA-HQ-A2OF-01 15 92690231 92690231 G A SLCO3A1 Silent p.A510A 0.29 TCGA-HQ-A2OF-01 16 19483526 19483526 C A TMC5 Nonsense_Mutation p.C633* 0.20 TCGA-HQ-A2OF-01 16 30722892 30722892 G C SRCAP Missense_Mutation p.G440A 0.22 unknown(0) TCGA-HQ-A2OF-01 16 55518029 55518029 G A MMP2 Missense_Mutation p.R161Q 0.21 tolerated(0.1) probably_damaging(0.952) TCGA-HQ-A2OF-01 16 68847275 68847277 TGA - CDH1 In_Frame_Del p.D400del 0.24 TCGA-HQ-A2OF-01 16 82101832 82101832 C T HSD17B2 Missense_Mutation p.T108M 0.32 deleterious(0.04) probably_damaging(0.938) TCGA-HQ-A2OF-01 17 15234356 15234356 G A TEKT3 Missense_Mutation p.R183W 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-HQ-A2OF-01 17 18181318 18181318 C T TOP3A Missense_Mutation p.R833Q 0.32 deleterious(0) probably_damaging(0.969) TCGA-HQ-A2OF-01 17 37881332 37881332 G A ERBB2 Missense_Mutation p.V842I 0.85 deleterious(0) probably_damaging(0.998) TCGA-HQ-A2OF-01 17 42478243 42478243 T G GPATCH8 Missense_Mutation p.H401P 0.25 deleterious(0.01) benign(0.316) TCGA-HQ-A2OF-01 17 45678994 45678994 A C NPEPPS Missense_Mutation p.M541L 0.28 tolerated(0.27) benign(0.005) TCGA-HQ-A2OF-01 17 45678995 45678995 T G NPEPPS Missense_Mutation p.M541R 0.26 tolerated(0.08) benign(0.015) TCGA-HQ-A2OF-01 17 45901504 45901504 C G MRPL10 3'UTR 0.09 TCGA-HQ-A2OF-01 17 45901597 45901597 C A MRPL10 Missense_Mutation p.D264Y 0.09 deleterious(0.01) benign(0.126) TCGA-HQ-A2OF-01 17 45901604 45901604 C T MRPL10 Silent p.G261G 0.08 TCGA-HQ-A2OF-01 17 46675476 46675476 T G HOXB6 Missense_Mutation p.T13P 0.07 tolerated(0.09) benign(0.271) TCGA-HQ-A2OF-01 17 48703809 48703809 C T CACNA1G Silent p.S2277S 0.13 TCGA-HQ-A2OF-01 17 48745251 48745251 G - ABCC3 Frame_Shift_Del p.V555Cfs*24 0.15 TCGA-HQ-A2OF-01 17 49270326 49270326 G C MBTD1 Missense_Mutation p.L503V 0.18 deleterious(0) probably_damaging(0.954) TCGA-HQ-A2OF-01 17 49270371 49270371 G A MBTD1 Missense_Mutation p.P488S 0.14 deleterious(0.04) benign(0.423) TCGA-HQ-A2OF-01 17 74003665 74003665 C T EVPL Missense_Mutation p.R1874H 0.51 deleterious(0) probably_damaging(1) TCGA-HQ-A2OF-01 17 7412464 7412464 G A POLR2A Missense_Mutation p.D1223N 0.67 probably_damaging(0.988) TCGA-HQ-A2OF-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.79 deleterious(0) probably_damaging(1) TCGA-HQ-A2OF-01 18 57569953 57569953 C T PMAIP1 Silent p.L45L 0.77 TCGA-HQ-A2OF-01 19 17443990 17443990 C T ANO8 Missense_Mutation p.G137R 0.31 deleterious(0) probably_damaging(0.998) TCGA-HQ-A2OF-01 19 2878406 2878406 C T ZNF556 3'UTR 0.43 TCGA-HQ-A2OF-01 19 3014582 3014582 G A TLE2 Silent p.L237L 0.41 TCGA-HQ-A2OF-01 19 50958852 50958852 C T MYBPC2 Silent p.I763I 0.31 TCGA-HQ-A2OF-01 19 58579130 58579130 C T ZNF135 Silent p.T450T 0.36 TCGA-HQ-A2OF-01 1 111861169 111861169 G A CHIA Missense_Mutation p.V262I 0.35 tolerated(0.12) benign(0.263) TCGA-HQ-A2OF-01 1 11982665 11982665 G A KIAA2013 Intron 0.36 TCGA-HQ-A2OF-01 1 152733684 152733684 G C KPRP Missense_Mutation p.E540D 0.27 tolerated_low_confidence(0.24) benign(0.002) TCGA-HQ-A2OF-01 1 154296116 154296116 C T AQP10 Missense_Mutation p.R181W 0.19 deleterious(0.04) probably_damaging(0.98) TCGA-HQ-A2OF-01 1 154698440 154698440 C T KCNN3 Silent p.A551A 0.21 TCGA-HQ-A2OF-01 1 154794588 154794588 C T KCNN3 Missense_Mutation p.A336T 0.14 tolerated(0.16) probably_damaging(0.996) TCGA-HQ-A2OF-01 1 156640305 156640305 G A NES Silent p.Y1225Y 0.20 TCGA-HQ-A2OF-01 1 158576467 158576467 G T OR10Z1 Missense_Mutation p.R80I 0.65 deleterious(0) benign(0.425) TCGA-HQ-A2OF-01 1 161569533 161569533 C T FCGR2C Intron 0.24 TCGA-HQ-A2OF-01 1 169565212 169565212 G T SELP Silent p.L684L 0.21 TCGA-HQ-A2OF-01 1 17257073 17257073 G A CROCC Nonsense_Mutation p.W278* 0.15 TCGA-HQ-A2OF-01 1 203734664 203734664 C T LAX1 5'UTR 0.25 TCGA-HQ-A2OF-01 1 205899136 205899136 C T SLC26A9 Missense_Mutation p.E201K 0.60 deleterious(0) probably_damaging(0.957) TCGA-HQ-A2OF-01 1 207966893 207966893 C T CD46 Missense_Mutation p.T386I 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-HQ-A2OF-01 1 236148686 236148686 A G NID1 Silent p.I1016I 0.27 TCGA-HQ-A2OF-01 1 41466748 41466748 C T CTPS1 Silent p.P351P 0.27 TCGA-HQ-A2OF-01 1 43317083 43317083 C T ZNF691 Missense_Mutation p.R183C 0.13 tolerated(0.19) possibly_damaging(0.771) TCGA-HQ-A2OF-01 1 92446550 92446550 T G BRDT Missense_Mutation p.I522R 0.50 deleterious(0) probably_damaging(0.977) TCGA-HQ-A2OF-01 20 44333210 44333210 A G WFDC13 Silent p.S72S 0.24 TCGA-HQ-A2OF-01 20 50007937 50007937 G A NFATC2 Missense_Mutation p.T925M 0.34 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-HQ-A2OF-01 20 60902720 60902720 G A LAMA5 Silent p.N1601N 0.21 TCGA-HQ-A2OF-01 20 62560744 62560744 G A DNAJC5 Missense_Mutation p.A63T 0.20 deleterious(0.01) possibly_damaging(0.902) TCGA-HQ-A2OF-01 21 22804561 22804561 G A NCAM2 Silent p.A538A 0.69 TCGA-HQ-A2OF-01 21 31709941 31709941 G A KRTAP27-1 Missense_Mutation p.P16S 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-HQ-A2OF-01 22 31663882 31663882 C G LIMK2 Missense_Mutation p.L396V 0.29 deleterious(0.05) benign(0.223) TCGA-HQ-A2OF-01 2 11750834 11750834 C T GREB1 Missense_Mutation p.A896V 0.19 tolerated(0.07) probably_damaging(0.936) TCGA-HQ-A2OF-01 2 140990760 140990760 C T LRP1B Missense_Mutation p.A4599T 0.62 possibly_damaging(0.483) TCGA-HQ-A2OF-01 2 162092023 162092023 G A TANK Silent p.E424E 0.25 TCGA-HQ-A2OF-01 2 175436742 175436742 G T WIPF1 Missense_Mutation p.P264H 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.595) TCGA-HQ-A2OF-01 2 179474260 179474260 C T TTN Silent p.V17259V 0.26 TCGA-HQ-A2OF-01 2 179590531 179590531 C A TTN Nonsense_Mutation p.G6840* 0.21 TCGA-HQ-A2OF-01 2 179641976 179641976 G A TTN Nonsense_Mutation p.R1572* 0.36 TCGA-HQ-A2OF-01 2 179655493 179655493 G A TTN Missense_Mutation p.P581L 0.22 TCGA-HQ-A2OF-01 2 197636594 197636594 G A GTF3C3 Missense_Mutation p.S713F 0.60 deleterious(0) probably_damaging(0.969) TCGA-HQ-A2OF-01 2 203130567 203130567 C T NOP58 5'UTR 0.09 TCGA-HQ-A2OF-01 2 234652349 234652349 C A UGT1A10 Intron 0.25 TCGA-HQ-A2OF-01 2 234878451 234878451 G A TRPM8 Missense_Mutation p.R713K 0.45 deleterious(0.05) possibly_damaging(0.696) TCGA-HQ-A2OF-01 2 47639699 47639699 G T MSH2 Missense_Mutation p.Q264H 0.40 tolerated(0.1) benign(0.125) TCGA-HQ-A2OF-01 3 133583443 133583443 G A RAB6B Silent p.F38F 0.33 TCGA-HQ-A2OF-01 3 138724643 138724643 G A PRR23A Silent p.Y156Y 0.47 TCGA-HQ-A2OF-01 3 64617147 64617147 G A ADAMTS9 Silent p.D791D 0.22 TCGA-HQ-A2OF-01 3 70014279 70014279 C T MITF Silent p.D481D 0.25 TCGA-HQ-A2OF-01 3 9027542 9027542 C T SRGAP3 Silent p.A987A 0.30 TCGA-HQ-A2OF-01 3 97167542 97167542 G A EPHA6 Missense_Mutation p.S621N 0.46 deleterious(0.03) possibly_damaging(0.648) TCGA-HQ-A2OF-01 4 170912519 170912519 G A MFAP3L 3'UTR 0.48 TCGA-HQ-A2OF-01 4 187549409 187549409 C A FAT1 Missense_Mutation p.R1570L 0.33 probably_damaging(0.983) TCGA-HQ-A2OF-01 4 4419237 4419237 A T NSG1 3'UTR 0.27 TCGA-HQ-A2OF-01 4 7435266 7435266 G A PSAPL1 Silent p.P447P 0.50 TCGA-HQ-A2OF-01 4 99339844 99339844 T G RAP1GDS1 Missense_Mutation p.V360G 0.29 deleterious(0) probably_damaging(0.948) TCGA-HQ-A2OF-01 5 137626404 137626404 G A CDC25C Missense_Mutation p.S263F 0.48 deleterious(0.01) probably_damaging(0.949) TCGA-HQ-A2OF-01 5 137803118 137803118 G A EGR1 Missense_Mutation p.R327Q 0.40 deleterious(0.01) unknown(0) TCGA-HQ-A2OF-01 5 140214396 140214396 C T PCDHA7 Missense_Mutation p.A143V 0.28 tolerated_low_confidence(0.17) benign(0.097) TCGA-HQ-A2OF-01 5 140228508 140228508 C T PCDHA9 Missense_Mutation p.A143V 0.08 tolerated_low_confidence(0.18) possibly_damaging(0.61) TCGA-HQ-A2OF-01 5 141382773 141382773 C T GNPDA1 Missense_Mutation p.E217K 0.46 deleterious(0.03) probably_damaging(0.995) TCGA-HQ-A2OF-01 5 15936756 15936756 G A FBXL7 Missense_Mutation p.D313N 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-HQ-A2OF-01 5 174869071 174869071 G C DRD1 Silent p.L344L 0.51 TCGA-HQ-A2OF-01 5 174869091 174869091 G A DRD1 Missense_Mutation p.R338W 0.46 deleterious(0.01) probably_damaging(0.953) TCGA-HQ-A2OF-01 5 31435937 31435937 C T DROSHA Missense_Mutation p.E993K 0.29 deleterious(0.01) probably_damaging(0.971) TCGA-HQ-A2OF-01 5 43175204 43175204 A G ZNF131 Missense_Mutation p.E580G 0.50 tolerated_low_confidence(0.2) possibly_damaging(0.859) TCGA-HQ-A2OF-01 5 63257088 63257088 G A HTR1A Silent p.A153A 0.89 TCGA-HQ-A2OF-01 5 82835880 82835880 C T VCAN Missense_Mutation p.T2353M 0.42 tolerated(0.23) benign(0.042) TCGA-HQ-A2OF-01 5 82849269 82849269 G A VCAN Missense_Mutation p.E3194K 0.39 deleterious(0) probably_damaging(0.97) TCGA-HQ-A2OF-01 6 152688470 152688470 G C SYNE1 Missense_Mutation p.F3285L 0.37 benign(0.025) TCGA-HQ-A2OF-01 6 166571918 166571918 G A T Missense_Mutation p.S398F 0.44 tolerated(0.11) probably_damaging(0.999) TCGA-HQ-A2OF-01 6 170592500 170592500 C T DLL1 Missense_Mutation p.G623R 0.31 tolerated(0.44) benign(0.005) TCGA-HQ-A2OF-01 6 26271205 26271205 C A HIST1H3G Silent p.A136A 0.78 TCGA-HQ-A2OF-01 6 27775340 27775340 G C HIST1H2BL Silent p.G115G 0.38 TCGA-HQ-A2OF-01 6 55739454 55739454 A T BMP5 Silent p.P70P 0.37 TCGA-HQ-A2OF-01 6 57472373 57472373 C G PRIM2 3'UTR 0.23 TCGA-HQ-A2OF-01 7 107399524 107399524 G A CBLL1 Silent p.G459G 0.29 TCGA-HQ-A2OF-01 7 137255995 137255995 C A DGKI Missense_Mutation p.D625Y 0.40 deleterious(0.01) possibly_damaging(0.882) TCGA-HQ-A2OF-01 7 142045302 142045302 G C TRBV4-2 5'UTR 0.17 TCGA-HQ-A2OF-01 7 142143691 142143691 G A TRBV6-7 Missense_Mutation p.P102L 0.25 tolerated(0.22) benign(0.044) TCGA-HQ-A2OF-01 7 48314855 48314855 G A ABCA13 Silent p.L1864L 0.37 TCGA-HQ-A2OF-01 7 77325843 77325843 C T RSBN1L Silent p.T19T 0.17 TCGA-HQ-A2OF-01 7 79082469 79082469 G A MAGI2 Silent p.S56S 0.23 TCGA-HQ-A2OF-01 7 97862272 97862272 G A TECPR1 Missense_Mutation p.S562L 0.50 deleterious(0.03) benign(0.006) TCGA-HQ-A2OF-01 8 113308061 113308061 C T CSMD3 Splice_Site p.X2872_splice 0.18 TCGA-HQ-A2OF-01 8 119122616 119122644 CAGTACTGATGCTGGCTTTGGCCAGCATC - EXT1 Frame_Shift_Del p.M215Kfs*7 0.24 TCGA-HQ-A2OF-01 8 142446018 142446018 C T PTP4A3 3'Flank 0.58 TCGA-HQ-A2OF-01 8 144999971 144999971 C A PLEC Missense_Mutation p.A1513S 0.15 unknown(0) TCGA-HQ-A2OF-01 8 48848390 48848390 C A PRKDC Missense_Mutation p.S450I 0.10 benign(0.192) TCGA-HQ-A2OF-01 8 65528598 65528598 G T CYP7B1 Missense_Mutation p.P167H 0.11 tolerated(0.16) possibly_damaging(0.726) TCGA-HQ-A2OF-01 8 75227224 75227224 G T JPH1 Silent p.V337V 0.11 TCGA-HQ-A2OF-01 8 89086906 89086906 G - MMP16 Frame_Shift_Del p.F384Sfs*44 0.31 TCGA-HQ-A2OF-01 9 125562419 125562419 G A OR1K1 Silent p.E6E 0.36 TCGA-HQ-A2OF-01 9 137777212 137777212 C T FCN2 Silent p.T143T 0.42 TCGA-HQ-A2OF-01 9 138715101 138715101 G A CAMSAP1 Missense_Mutation p.A469V 0.42 tolerated(0.9) benign(0.001) TCGA-HQ-A2OF-01 9 32633059 32633059 C T TAF1L Missense_Mutation p.R840Q 0.10 tolerated(0.18) possibly_damaging(0.906) TCGA-HQ-A2OF-01 9 34623555 34623555 G A ARID3C Silent p.G244G 0.52 TCGA-HQ-A2OF-01 9 97321411 97321411 G A FBP2 Missense_Mutation p.R277W 0.37 deleterious(0) benign(0.365) TCGA-HQ-A2OF-01 X 103045589 103045589 C T PLP1 3'UTR 0.60 TCGA-HQ-A2OF-01 X 129630088 129630088 C T RP1-274L7.1 Intron 0.33 TCGA-HQ-A2OF-01 X 140271101 140271101 C T LDOC1 Missense_Mutation p.E36K 0.33 tolerated(0.06) possibly_damaging(0.851) TCGA-HQ-A2OF-01 X 152734665 152734665 G A HAUS7 Nonsense_Mutation p.Q65* 0.52 TCGA-HQ-A2OF-01 X 208186 208186 G A PLCXD1 Silent p.S138S 0.11 TCGA-HQ-A2OF-01 X 43590545 43590545 G A MAOA Missense_Mutation p.G235R 0.79 deleterious(0.01) possibly_damaging(0.734) TCGA-HQ-A2OF-01 X 53565383 53565383 G A HUWE1 Missense_Mutation p.R3971W 0.41 unknown(0) TCGA-HQ-A5ND-01 10 102799279 102799279 G C SFXN3 Silent p.L305L 0.33 TCGA-HQ-A5ND-01 10 88768575 88768575 C T RP11-96C23.10 3'Flank 0.32 TCGA-HQ-A5ND-01 11 17757895 17757895 G A KCNC1 Missense_Mutation p.E116K 0.18 tolerated(0.06) possibly_damaging(0.703) TCGA-HQ-A5ND-01 11 56237919 56237919 G A OR5M3 Nonsense_Mutation p.R19* 0.11 TCGA-HQ-A5ND-01 11 61503822 61503822 G A DAGLA Silent p.L457L 0.17 TCGA-HQ-A5ND-01 11 93530797 93530797 G C MED17 Missense_Mutation p.D414H 0.24 deleterious(0.04) benign(0.011) TCGA-HQ-A5ND-01 11 96124104 96124104 A T JRKL Silent p.I97I 0.22 TCGA-HQ-A5ND-01 12 104147103 104147103 C T STAB2 Missense_Mutation p.T2229I 0.30 deleterious(0) probably_damaging(1) TCGA-HQ-A5ND-01 12 2102436 2102436 C A DCP1B Missense_Mutation p.A105S 0.31 deleterious(0) possibly_damaging(0.824) TCGA-HQ-A5ND-01 12 26276075 26276075 G A BHLHE41 Nonsense_Mutation p.Q125* 0.20 TCGA-HQ-A5ND-01 12 49332745 49332745 G A AC073610.5 Silent p.L52L 0.12 TCGA-HQ-A5ND-01 12 49425800 49425800 G A KMT2D Nonsense_Mutation p.Q4230* 0.52 TCGA-HQ-A5ND-01 12 55846129 55846129 C T OR6C2 Silent p.I44I 0.45 TCGA-HQ-A5ND-01 12 57929310 57929310 C G DCTN2 Missense_Mutation p.G79A 0.27 tolerated(0.15) benign(0.297) TCGA-HQ-A5ND-01 12 6935421 6935421 G A GPR162 Missense_Mutation p.G373E 0.46 tolerated(0.43) probably_damaging(0.998) TCGA-HQ-A5ND-01 13 103268775 103268775 T C TPP2 Silent p.P140P 0.31 TCGA-HQ-A5ND-01 13 25066624 25066624 G A PARP4 Missense_Mutation p.H330Y 0.43 deleterious(0) possibly_damaging(0.54) TCGA-HQ-A5ND-01 13 32912486 32912486 C G BRCA2 Missense_Mutation p.H1332D 0.23 tolerated(0.21) benign(0.071) TCGA-HQ-A5ND-01 14 22192349 22192349 T C TRAV3 Missense_Mutation p.C42R 0.72 deleterious(0) probably_damaging(0.998) TCGA-HQ-A5ND-01 14 73967273 73967273 A C HEATR4 Missense_Mutation p.L756R 0.11 deleterious(0.01) benign(0.263) TCGA-HQ-A5ND-01 15 33893707 33893707 C T RYR3 Missense_Mutation p.R626W 0.43 possibly_damaging(0.903) TCGA-HQ-A5ND-01 15 69323998 69323998 G C NOX5 Missense_Mutation p.E156Q 0.41 deleterious(0.01) possibly_damaging(0.488) TCGA-HQ-A5ND-01 16 20352473 20352473 C T UMOD Missense_Mutation p.C506Y 0.17 deleterious(0.03) probably_damaging(1) TCGA-HQ-A5ND-01 16 2140903 2140903 G C PKD1 Silent p.L3995L 0.24 TCGA-HQ-A5ND-01 16 2141890 2141890 G T PKD1 Missense_Mutation p.S3810Y 0.46 benign(0.001) TCGA-HQ-A5ND-01 16 33647259 33647259 T C RP11-812E19.9 Missense_Mutation p.Y114C 0.24 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HQ-A5ND-01 16 5135027 5135027 T C FAM86A 3'UTR 0.60 TCGA-HQ-A5ND-01 16 56443333 56443334 - AT AMFR Intron 0.15 TCGA-HQ-A5ND-01 16 66942339 66942339 G A CDH16 Missense_Mutation p.P816S 0.33 tolerated(0.73) benign(0.013) TCGA-HQ-A5ND-01 16 72829005 72829005 G A ZFHX3 Nonsense_Mutation p.Q2526* 0.14 TCGA-HQ-A5ND-01 16 75563650 75563650 G A CHST5 Silent p.S211S 0.05 TCGA-HQ-A5ND-01 16 83945958 83945958 G A MLYCD Missense_Mutation p.V312I 0.27 tolerated(0.1) benign(0.034) TCGA-HQ-A5ND-01 17 17079788 17079788 A G MPRIP Missense_Mutation p.I920V 0.24 tolerated(0.19) benign(0.376) TCGA-HQ-A5ND-01 17 30325880 30325880 C T SUZ12 Missense_Mutation p.S693F 0.32 deleterious_low_confidence(0) benign(0.143) TCGA-HQ-A5ND-01 17 3119721 3119721 C T OR1A1 Silent p.D269D 0.20 TCGA-HQ-A5ND-01 17 33591589 33591589 C T SLFN5 Missense_Mutation p.S509L 0.32 tolerated(0.07) benign(0) TCGA-HQ-A5ND-01 17 57737776 57737776 G T CLTC Nonsense_Mutation p.E332* 0.11 TCGA-HQ-A5ND-01 17 7132985 7132985 G A DVL2 Silent p.S223S 0.28 TCGA-HQ-A5ND-01 17 72367943 72367943 C T GPR142 Missense_Mutation p.A198V 0.12 deleterious(0) probably_damaging(0.99) TCGA-HQ-A5ND-01 17 7579849 7579849 G - TP53 Frame_Shift_Del p.L22Yfs*22 0.28 TCGA-HQ-A5ND-01 17 76502866 76502866 C T DNAH17 Missense_Mutation p.R1576Q 0.09 probably_damaging(1) TCGA-HQ-A5ND-01 17 7681476 7681476 G A DNAH2 Missense_Mutation p.V1777I 0.26 probably_damaging(0.999) TCGA-HQ-A5ND-01 18 22805859 22805860 - A ZNF521 Frame_Shift_Ins p.N675* 0.15 TCGA-HQ-A5ND-01 18 39570477 39570477 A G PIK3C3 Missense_Mutation p.K225E 0.30 tolerated(0.34) benign(0.005) TCGA-HQ-A5ND-01 18 6311631 6311631 C T L3MBTL4 5'UTR 0.33 TCGA-HQ-A5ND-01 19 11569369 11569369 C A ELAVL3 Missense_Mutation p.G131W 0.25 deleterious(0) probably_damaging(1) TCGA-HQ-A5ND-01 19 15535182 15535182 T C WIZ Silent p.E679E 0.24 TCGA-HQ-A5ND-01 19 36940601 36940601 T C ZNF566 Missense_Mutation p.T180A 0.10 tolerated(1) benign(0.001) TCGA-HQ-A5ND-01 19 43237072 43237072 G T PSG3 Missense_Mutation p.H191Q 0.08 tolerated(0.49) benign(0.038) TCGA-HQ-A5ND-01 19 51331030 51331030 C A KLK15 Missense_Mutation p.A29S 0.13 tolerated(0.62) benign(0.257) TCGA-HQ-A5ND-01 19 6375860 6375860 T C PSPN Translation_Start_Site p.M1? 0.26 tolerated_low_confidence(0.09) benign(0.292) TCGA-HQ-A5ND-01 1 120437138 120437138 C A ADAM30 Missense_Mutation p.D608Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-HQ-A5ND-01 1 149858613 149858613 G A HIST2H2AC Missense_Mutation p.R30Q 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-HQ-A5ND-01 1 152324258 152324258 C T FLG2 Missense_Mutation p.A2002T 0.19 benign(0.403) TCGA-HQ-A5ND-01 1 20072067 20072067 T C TMCO4 Missense_Mutation p.I279V 0.25 tolerated(0.31) benign(0.03) TCGA-HQ-A5ND-01 1 206651603 206651603 A G IKBKE Missense_Mutation p.I305V 0.22 tolerated(0.12) benign(0.081) TCGA-HQ-A5ND-01 1 237729877 237729877 C T RYR2 Silent p.A1075A 0.40 TCGA-HQ-A5ND-01 1 248436765 248436765 A G OR2T33 Missense_Mutation p.Y118H 0.22 deleterious(0) probably_damaging(0.95) TCGA-HQ-A5ND-01 1 44121325 44121325 C G KDM4A Missense_Mutation p.P68A 0.26 tolerated(0.06) possibly_damaging(0.672) TCGA-HQ-A5ND-01 1 63282349 63282349 G A ATG4C Nonsense_Mutation p.W88* 0.14 TCGA-HQ-A5ND-01 1 89448729 89448729 C A RBMXL1 Missense_Mutation p.G261C 0.38 tolerated(0.09) benign(0.021) TCGA-HQ-A5ND-01 20 13709067 13709067 C G ESF1 Missense_Mutation p.D666H 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-HQ-A5ND-01 20 23546710 23546710 A G CST9L Silent p.T85T 0.20 TCGA-HQ-A5ND-01 20 48500447 48500447 G T SLC9A8 Silent p.R461R 0.37 TCGA-HQ-A5ND-01 20 62164040 62164040 T C PTK6 Missense_Mutation p.D224G 0.28 tolerated(0.99) benign(0.039) TCGA-HQ-A5ND-01 20 62571246 62571246 T A UCKL1 3'UTR 0.27 TCGA-HQ-A5ND-01 20 9510385 9510385 C T LAMP5 Missense_Mutation p.A254V 0.37 tolerated(0.26) benign(0.008) TCGA-HQ-A5ND-01 2 107041335 107041337 TCT - RGPD3 In_Frame_Del p.K1029del 0.10 TCGA-HQ-A5ND-01 2 168115750 168115750 T A XIRP2 3'UTR 0.45 TCGA-HQ-A5ND-01 2 179605437 179605437 G C TTN Missense_Mutation p.Q4175E 0.74 TCGA-HQ-A5ND-01 2 179665393 179665393 G A TTN Silent p.P104P 0.69 TCGA-HQ-A5ND-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.29 deleterious(0.04) benign(0.233) TCGA-HQ-A5ND-01 2 80772197 80772197 C A CTNNA2 Missense_Mutation p.Q461K 0.26 deleterious(0.02) benign(0.194) TCGA-HQ-A5ND-01 2 98996707 98996707 G A CNGA3 Silent p.P95P 0.14 TCGA-HQ-A5ND-01 3 100484750 100484750 C A ABI3BP Missense_Mutation p.K884N 0.33 deleterious(0) probably_damaging(0.987) TCGA-HQ-A5ND-01 3 125701190 125701190 C T ROPN1B Silent p.F158F 0.19 TCGA-HQ-A5ND-01 3 9854684 9854684 C T TTLL3 Missense_Mutation p.R179W 0.24 deleterious(0.02) benign(0.048) TCGA-HQ-A5ND-01 4 66356136 66356136 G A EPHA5 Missense_Mutation p.A454V 0.43 deleterious(0.02) benign(0.001) TCGA-HQ-A5ND-01 4 71347218 71347218 G A MUC7 Missense_Mutation p.A253T 0.21 tolerated(0.34) unknown(0) TCGA-HQ-A5ND-01 4 86403 86403 G A Z95704.2 RNA 0.19 TCGA-HQ-A5ND-01 5 112175174 112175174 G A APC Missense_Mutation p.E1295K 0.30 benign(0.001) TCGA-HQ-A5ND-01 5 13891183 13891183 G A DNAH5 Missense_Mutation p.R827C 0.06 possibly_damaging(0.689) TCGA-HQ-A5ND-01 5 149681715 149681715 C A ARSI Silent p.L74L 0.42 TCGA-HQ-A5ND-01 5 171614993 171614993 T C STK10 Silent p.R18R 0.21 TCGA-HQ-A5ND-01 5 45262020 45262020 G T HCN1 3'UTR 0.07 TCGA-HQ-A5ND-01 5 50090120 50090120 G T PARP8 Nonsense_Mutation p.E273* 0.18 TCGA-HQ-A5ND-01 5 917214 917214 T A TRIP13 Missense_Mutation p.I432N 0.14 deleterious_low_confidence(0) benign(0.137) TCGA-HQ-A5ND-01 6 18264722 18264722 G C DEK 5'UTR 0.33 TCGA-HQ-A5ND-01 6 31691688 31691688 C A C6orf25 Missense_Mutation p.H112N 0.47 tolerated_low_confidence(0.2) benign(0.011) TCGA-HQ-A5ND-01 6 33368059 33368059 C T KIFC1 Intron 0.22 TCGA-HQ-A5ND-01 6 39832814 39832814 A C DAAM2 Missense_Mutation p.E131A 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-HQ-A5ND-01 6 89479549 89479549 A G RNGTT Silent p.P461P 0.21 TCGA-HQ-A5ND-01 7 102915967 102915967 G A DPY19L2P2 RNA 0.31 TCGA-HQ-A5ND-01 7 107822277 107822277 G A NRCAM Nonsense_Mutation p.Q879* 0.53 TCGA-HQ-A5ND-01 7 116963053 116963053 C T WNT2 5'UTR 0.53 TCGA-HQ-A5ND-01 7 117232384 117232384 G A CFTR Missense_Mutation p.M721I 0.22 tolerated(0.65) benign(0.001) TCGA-HQ-A5ND-01 7 123150002 123150002 G A IQUB Missense_Mutation p.S162L 0.19 deleterious(0) probably_damaging(0.993) TCGA-HQ-A5ND-01 7 134617837 134617837 G C CALD1 Missense_Mutation p.R106T 0.17 deleterious(0) unknown(0) TCGA-HQ-A5ND-01 7 152008976 152008979 CTGT - KMT2C Frame_Shift_Del p.T215Lfs*45 0.33 TCGA-HQ-A5ND-01 7 25181943 25181943 G A C7orf31 Missense_Mutation p.P290S 0.20 deleterious(0.02) benign(0.266) TCGA-HQ-A5ND-01 7 2953006 2953006 G A CARD11 Silent p.L978L 0.16 TCGA-HQ-A5ND-01 7 44098978 44098978 G C DBNL Missense_Mutation p.Q296H 0.20 deleterious(0.01) benign(0.029) TCGA-HQ-A5ND-01 7 44555565 44555565 C T NPC1L1 Splice_Site p.X1239_splice 0.35 TCGA-HQ-A5ND-01 7 72040576 72040576 G A TYW1B Silent p.H264H 0.19 TCGA-HQ-A5ND-01 7 72430563 72430563 C G TRIM74 Missense_Mutation p.E239Q 0.19 tolerated(0.09) benign(0.015) TCGA-HQ-A5ND-01 7 73609545 73609545 C T EIF4H Silent p.V218V 0.09 TCGA-HQ-A5ND-01 7 82585919 82585919 C T PCLO Silent p.E1450E 0.22 TCGA-HQ-A5ND-01 7 97851743 97851743 C T TECPR1 Missense_Mutation p.G1007S 0.24 deleterious(0) probably_damaging(0.988) TCGA-HQ-A5ND-01 8 120809280 120809280 G A TAF2 Silent p.A347A 0.11 TCGA-HQ-A5ND-01 8 38006246 38006246 T C STAR Missense_Mutation p.I31V 0.52 deleterious(0.05) benign(0.156) TCGA-HQ-A5ND-01 8 59515824 59515824 G C NSMAF Silent p.L361L 0.15 TCGA-HQ-A5ND-01 9 117568325 117568325 C G TNFSF15 5'UTR 0.70 TCGA-HQ-A5ND-01 9 138713262 138713262 G A CAMSAP1 Missense_Mutation p.T1082M 0.05 tolerated(0.05) possibly_damaging(0.776) TCGA-HQ-A5ND-01 9 139748775 139748775 C T MAMDC4 Silent p.N261N 0.18 TCGA-HQ-A5ND-01 9 5774103 5774104 - GC KIAA1432 Frame_Shift_Ins p.R1378Afs*60 0.35 TCGA-HQ-A5ND-01 9 97088047 97088047 G C NUTM2F Silent p.T62T 0.62 TCGA-HQ-A5ND-01 X 107824215 107824215 T C COL4A5 Silent p.G298G 0.73 TCGA-HQ-A5ND-01 X 130411007 130411007 C T IGSF1 Silent p.S843S 0.22 TCGA-HQ-A5ND-01 X 142605142 142605142 C T SPANXN3 Silent p.E26E 0.75 TCGA-HQ-A5ND-01 X 153171632 153171632 C T AVPR2 Silent p.C224C 0.85 TCGA-HQ-A5ND-01 X 15343168 15343168 C A PIGA Missense_Mutation p.V319L 0.10 tolerated(0.19) possibly_damaging(0.59) TCGA-HQ-A5NE-01 10 102035218 102035218 C G BLOC1S2 3'UTR 0.34 TCGA-HQ-A5NE-01 10 115350619 115350619 G A NRAP Silent p.D1558D 0.12 TCGA-HQ-A5NE-01 10 119014797 119014797 C A SLC18A2 Missense_Mutation p.P237H 0.06 deleterious(0) possibly_damaging(0.877) TCGA-HQ-A5NE-01 10 12238254 12238254 G A CDC123 Missense_Mutation p.E4K 0.03 tolerated(0.18) benign(0.391) TCGA-HQ-A5NE-01 10 15573141 15573141 C G ITGA8 Missense_Mutation p.D964H 0.06 tolerated(0.22) benign(0.414) TCGA-HQ-A5NE-01 10 16873362 16873362 G C CUBN Missense_Mutation p.L3473V 0.42 tolerated(0.53) benign(0.119) TCGA-HQ-A5NE-01 10 27702213 27702213 G A PTCHD3 Missense_Mutation p.R323W 0.19 deleterious(0) possibly_damaging(0.586) TCGA-HQ-A5NE-01 10 29821582 29821582 C G SVIL Missense_Mutation p.E572Q 0.48 tolerated(0.22) benign(0.365) TCGA-HQ-A5NE-01 10 29839871 29839871 C T SVIL Missense_Mutation p.R161K 0.17 tolerated(0.98) benign(0.001) TCGA-HQ-A5NE-01 10 54048692 54048692 G A PRKG1 Missense_Mutation p.D612N 0.24 deleterious(0.01) probably_damaging(0.913) TCGA-HQ-A5NE-01 10 76788699 76788699 G A KAT6B Missense_Mutation p.E1373K 0.14 benign(0.156) TCGA-HQ-A5NE-01 10 88260183 88260183 C T WAPAL Missense_Mutation p.E273K 0.33 tolerated_low_confidence(0.15) benign(0.169) TCGA-HQ-A5NE-01 10 88854364 88854364 C A GLUD1 Nonsense_Mutation p.E55* 0.08 TCGA-HQ-A5NE-01 10 93748959 93748959 C G BTAF1 Missense_Mutation p.Q826E 0.31 deleterious(0.02) benign(0) TCGA-HQ-A5NE-01 10 93788547 93788547 G A BTAF1 Missense_Mutation p.D1803N 0.16 tolerated(0.4) benign(0.004) TCGA-HQ-A5NE-01 10 98105573 98105573 C T OPALIN 3'UTR 0.21 TCGA-HQ-A5NE-01 10 98136477 98136477 G T TLL2 Missense_Mutation p.S807Y 0.06 deleterious(0.04) benign(0.274) TCGA-HQ-A5NE-01 10 98240150 98240150 C G TLL2 Missense_Mutation p.R81T 0.09 tolerated(0.59) benign(0.001) TCGA-HQ-A5NE-01 10 98273428 98273428 A G TLL2 Silent p.T5T 0.33 TCGA-HQ-A5NE-01 11 110451085 110451085 C - ARHGAP20 Frame_Shift_Del p.G862Efs*42 0.30 TCGA-HQ-A5NE-01 11 114278282 114278282 C T RBM7 Missense_Mutation p.S185L 0.32 tolerated(0.17) benign(0.21) TCGA-HQ-A5NE-01 11 117859158 117859158 C G IL10RA Silent p.L43L 0.38 TCGA-HQ-A5NE-01 11 118981783 118981783 C T C2CD2L Missense_Mutation p.L235F 0.08 deleterious(0.01) possibly_damaging(0.642) TCGA-HQ-A5NE-01 11 119044681 119044681 C A NLRX1 Silent p.L241L 0.20 TCGA-HQ-A5NE-01 11 119044705 119044705 C G NLRX1 Silent p.L249L 0.16 TCGA-HQ-A5NE-01 11 120350854 120350854 G A ARHGEF12 Missense_Mutation p.G1318R 0.14 tolerated_low_confidence(0.24) benign(0.01) TCGA-HQ-A5NE-01 11 123988549 123988549 G C VWA5A Missense_Mutation p.K71N 0.10 deleterious(0.04) benign(0.046) TCGA-HQ-A5NE-01 11 130079749 130079749 C T ST14 3'UTR 0.05 TCGA-HQ-A5NE-01 11 17434262 17434262 C T ABCC8 Missense_Mutation p.R836Q 0.42 deleterious(0) probably_damaging(0.971) TCGA-HQ-A5NE-01 11 47648675 47648675 G A MTCH2 Missense_Mutation p.S213F 0.32 deleterious(0) probably_damaging(0.959) TCGA-HQ-A5NE-01 11 55136350 55136350 A T OR4A15 Missense_Mutation p.S331C 0.32 tolerated_low_confidence(0.38) benign(0.031) TCGA-HQ-A5NE-01 11 55406210 55406210 A G OR4P4 Missense_Mutation p.K126R 0.27 tolerated(0.26) benign(0.043) TCGA-HQ-A5NE-01 11 60615506 60615506 G C CCDC86 Missense_Mutation p.E290Q 0.32 tolerated(0.08) probably_damaging(0.994) TCGA-HQ-A5NE-01 11 61574143 61574143 G A FADS1 Silent p.F323F 0.08 TCGA-HQ-A5NE-01 11 618099 618099 G C CDHR5 Missense_Mutation p.S658W 0.14 deleterious(0.01) possibly_damaging(0.763) TCGA-HQ-A5NE-01 11 64851462 64851462 C T CDCA5 5'UTR 0.35 TCGA-HQ-A5NE-01 11 6532523 6532523 C A DNHD1 Missense_Mutation p.S419Y 0.34 probably_damaging(0.95) TCGA-HQ-A5NE-01 11 6540947 6540947 G C DNHD1 Missense_Mutation p.E504Q 0.35 benign(0.178) TCGA-HQ-A5NE-01 11 65620773 65620773 G A SNX32 Silent p.R393R 0.25 TCGA-HQ-A5NE-01 11 66053169 66053169 G C YIF1A Intron 0.30 TCGA-HQ-A5NE-01 11 67166421 67166421 C T PPP1CA Missense_Mutation p.R257Q 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-HQ-A5NE-01 11 68191088 68191088 G A LRP5 Silent p.L1053L 0.31 TCGA-HQ-A5NE-01 11 95532470 95532470 T C CEP57 Silent p.P40P 0.26 TCGA-HQ-A5NE-01 12 102074286 102074286 G A MYBPC1 Missense_Mutation p.E1131K 0.50 deleterious(0) possibly_damaging(0.595) TCGA-HQ-A5NE-01 12 108985559 108985559 C A TMEM119 Nonsense_Mutation p.E201* 0.18 TCGA-HQ-A5NE-01 12 117996316 117996316 C A KSR2 Missense_Mutation p.R463L 0.13 tolerated(0.7) benign(0.413) TCGA-HQ-A5NE-01 12 118481089 118481089 C G WSB2 Missense_Mutation p.Q92H 0.10 deleterious(0.03) possibly_damaging(0.827) TCGA-HQ-A5NE-01 12 121773386 121773386 C G ANAPC5 Missense_Mutation p.L300F 0.11 tolerated(0.25) possibly_damaging(0.609) TCGA-HQ-A5NE-01 12 21331569 21331569 C T SLCO1B1 Missense_Mutation p.R181C 0.07 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 12 21788484 21788484 C G LDHB Missense_Mutation p.D333H 0.05 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-HQ-A5NE-01 12 2622129 2622129 G C CACNA1C Missense_Mutation p.D457H 0.18 deleterious(0.04) benign(0.099) TCGA-HQ-A5NE-01 12 29486714 29486714 C T FAR2 Missense_Mutation p.T512M 0.25 deleterious(0.02) benign(0.027) TCGA-HQ-A5NE-01 12 30906679 30906679 G A CAPRIN2 Nonsense_Mutation p.Q7* 0.16 TCGA-HQ-A5NE-01 12 32135469 32135469 C T KIAA1551 Missense_Mutation p.S527L 0.18 tolerated(0.56) benign(0.436) TCGA-HQ-A5NE-01 12 49491354 49491354 C G LMBR1L 3'UTR 0.26 TCGA-HQ-A5NE-01 12 52908953 52908953 G A KRT5 Missense_Mutation p.L516F 0.16 tolerated(0.71) unknown(0) TCGA-HQ-A5NE-01 12 54110119 54110119 C A CALCOCO1 Missense_Mutation p.Q310H 0.32 tolerated(0.07) benign(0.004) TCGA-HQ-A5NE-01 12 56428453 56428453 G A IKZF4 Missense_Mutation p.E366K 0.38 deleterious(0.01) benign(0.086) TCGA-HQ-A5NE-01 12 56482537 56482537 G A ERBB3 Missense_Mutation p.E332K 0.37 tolerated(0.15) possibly_damaging(0.67) TCGA-HQ-A5NE-01 12 56530662 56530662 G T ESYT1 Missense_Mutation p.M599I 0.26 tolerated(0.39) benign(0.001) TCGA-HQ-A5NE-01 12 56531307 56531307 G C ESYT1 Missense_Mutation p.E665Q 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-HQ-A5NE-01 12 57867440 57867440 G C ARHGAP9 Nonsense_Mutation p.S657* 0.35 TCGA-HQ-A5NE-01 12 57881806 57881806 C T MARS 5'UTR 0.43 TCGA-HQ-A5NE-01 12 7047992 7047992 G A ATN1 Missense_Mutation p.E956K 0.27 probably_damaging(0.987) TCGA-HQ-A5NE-01 12 8375060 8375060 G C FAM90A1 Silent p.L251L 0.12 TCGA-HQ-A5NE-01 12 85450573 85450573 G A LRRIQ1 Missense_Mutation p.E668K 0.39 deleterious(0.03) possibly_damaging(0.46) TCGA-HQ-A5NE-01 12 85492210 85492210 G A LRRIQ1 Missense_Mutation p.D989N 0.26 tolerated(0.6) probably_damaging(0.929) TCGA-HQ-A5NE-01 12 94244158 94244158 G A CRADD 3'UTR 0.45 TCGA-HQ-A5NE-01 12 99548167 99548167 C T ANKS1B Missense_Mutation p.R809K 0.39 tolerated(0.06) possibly_damaging(0.829) TCGA-HQ-A5NE-01 13 100518586 100518586 C G CLYBL Missense_Mutation p.L243V 0.08 deleterious(0.01) possibly_damaging(0.596) TCGA-HQ-A5NE-01 13 103289462 103289462 A G TPP2 Missense_Mutation p.H570R 0.12 tolerated(0.73) benign(0.189) TCGA-HQ-A5NE-01 13 32352677 32352677 C G RXFP2 Missense_Mutation p.L248V 0.18 deleterious(0.03) benign(0.066) TCGA-HQ-A5NE-01 13 33273919 33273919 G A PDS5B Silent p.Q551Q 0.11 TCGA-HQ-A5NE-01 13 33320235 33320235 C A PDS5B Silent p.I911I 0.27 TCGA-HQ-A5NE-01 13 42740803 42740803 C T DGKH Missense_Mutation p.H371Y 0.47 tolerated(0.1) benign(0.008) TCGA-HQ-A5NE-01 13 72014707 72014707 T - DACH1 3'UTR 0.11 TCGA-HQ-A5NE-01 14 101489693 101489693 G T MIR411 RNA 0.45 TCGA-HQ-A5NE-01 14 20825585 20825585 G A PARP2 Missense_Mutation p.E500K 0.12 tolerated(0.36) benign(0.008) TCGA-HQ-A5NE-01 14 24652224 24652224 G A IPO4 Silent p.L793L 0.46 TCGA-HQ-A5NE-01 14 24652248 24652248 G A IPO4 Silent p.L785L 0.42 TCGA-HQ-A5NE-01 14 24808329 24808329 C T RIPK3 Silent p.L121L 0.43 TCGA-HQ-A5NE-01 14 24841687 24841687 C T NFATC4 Nonsense_Mutation p.Q476* 0.44 TCGA-HQ-A5NE-01 14 35579793 35579793 C T PPP2R3C Missense_Mutation p.E77K 0.35 deleterious(0.03) possibly_damaging(0.519) TCGA-HQ-A5NE-01 14 39583500 39583500 G C GEMIN2 5'UTR 0.16 TCGA-HQ-A5NE-01 14 53347817 53347817 C G FERMT2 Silent p.V264V 0.07 TCGA-HQ-A5NE-01 14 59830408 59830408 G A DAAM1 Missense_Mutation p.D922N 0.41 deleterious(0) probably_damaging(0.97) TCGA-HQ-A5NE-01 14 60923782 60923782 A G C14orf39 Missense_Mutation p.V404A 0.33 tolerated(0.76) benign(0) TCGA-HQ-A5NE-01 14 64891572 64891572 G A MTHFD1 Missense_Mutation p.E260K 0.38 tolerated(0.13) benign(0.026) TCGA-HQ-A5NE-01 14 67579886 67579886 G A GPHN Missense_Mutation p.E542K 0.08 deleterious(0) probably_damaging(0.99) TCGA-HQ-A5NE-01 14 72431570 72431570 C G RGS6 Missense_Mutation p.P21R 0.16 deleterious(0) possibly_damaging(0.781) TCGA-HQ-A5NE-01 14 73425341 73425341 G A DCAF4 Missense_Mutation p.R439K 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-HQ-A5NE-01 14 82000085 82000085 G A SEL1L Missense_Mutation p.R2W 0.08 deleterious_low_confidence(0) benign(0.249) TCGA-HQ-A5NE-01 14 90770544 90770544 G A NRDE2 Missense_Mutation p.S247L 0.22 tolerated(0.09) benign(0.013) TCGA-HQ-A5NE-01 15 102291905 102291905 C A DNM1P47 RNA 0.11 TCGA-HQ-A5NE-01 15 25342886 25342886 C T SNORD116-25 RNA 0.15 TCGA-HQ-A5NE-01 15 31355457 31355457 C T TRPM1 Missense_Mutation p.E294K 0.25 deleterious(0) probably_damaging(0.995) TCGA-HQ-A5NE-01 15 45814238 45814238 C T SLC30A4 Silent p.L105L 0.27 TCGA-HQ-A5NE-01 15 45814289 45814289 C T SLC30A4 Silent p.L88L 0.28 TCGA-HQ-A5NE-01 15 51791498 51791498 C G DMXL2 Missense_Mutation p.R1308T 0.30 deleterious(0.05) possibly_damaging(0.547) TCGA-HQ-A5NE-01 15 55522647 55522647 C T RAB27A Missense_Mutation p.R64K 0.28 tolerated(0.43) benign(0.002) TCGA-HQ-A5NE-01 15 60770229 60770229 G A NARG2 5'UTR 0.31 TCGA-HQ-A5NE-01 15 63930659 63930659 C A HERC1 Missense_Mutation p.R4015I 0.17 probably_damaging(0.999) TCGA-HQ-A5NE-01 15 66795700 66795700 T A RPL4 Missense_Mutation p.L57F 0.06 tolerated(0.47) benign(0.011) TCGA-HQ-A5NE-01 15 73020291 73020291 G C BBS4 Missense_Mutation p.E200Q 0.12 deleterious(0.03) possibly_damaging(0.483) TCGA-HQ-A5NE-01 15 75659976 75659976 C G MAN2C1 Splice_Site p.X76_splice 0.14 TCGA-HQ-A5NE-01 15 78825858 78825858 C G HYKK Missense_Mutation p.S323C 0.07 deleterious(0) possibly_damaging(0.687) TCGA-HQ-A5NE-01 16 10631787 10631787 G A EMP2 Missense_Mutation p.S105L 0.37 deleterious(0) possibly_damaging(0.592) TCGA-HQ-A5NE-01 16 15710911 15710911 C T KIAA0430 Silent p.L1025L 0.06 TCGA-HQ-A5NE-01 16 23568552 23568552 C G EARS2 Missense_Mutation p.R38P 0.12 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 16 30018583 30018583 C T DOC2A Missense_Mutation p.E189K 0.22 deleterious(0.03) possibly_damaging(0.732) TCGA-HQ-A5NE-01 16 31470883 31470883 C T ARMC5 Missense_Mutation p.S13L 0.25 deleterious(0.01) unknown(0) TCGA-HQ-A5NE-01 16 56374811 56374811 G T GNAO1 Silent p.T263T 0.24 TCGA-HQ-A5NE-01 16 68208294 68208294 G C NFATC3 Missense_Mutation p.E598Q 0.16 deleterious(0) benign(0.129) TCGA-HQ-A5NE-01 16 70363368 70363368 C G DDX19B Missense_Mutation p.Q261E 0.33 deleterious(0.03) benign(0.048) TCGA-HQ-A5NE-01 16 712823 712823 C T WDR90 Silent p.L1430L 0.50 TCGA-HQ-A5NE-01 16 715958 715958 C G WDR90 Silent p.L1481L 0.14 TCGA-HQ-A5NE-01 16 74525054 74525054 C A GLG1 Nonsense_Mutation p.E432* 0.42 TCGA-HQ-A5NE-01 16 76556103 76556103 G A CNTNAP4 Missense_Mutation p.A829T 0.09 tolerated(0.21) benign(0.166) TCGA-HQ-A5NE-01 16 87677961 87677961 G C JPH3 Silent p.L160L 0.18 TCGA-HQ-A5NE-01 16 89815107 89815107 G T FANCA Missense_Mutation p.A1103D 0.11 tolerated(0.07) possibly_damaging(0.665) TCGA-HQ-A5NE-01 17 1939336 1939336 G A DPH1 Silent p.A122A 0.43 TCGA-HQ-A5NE-01 17 19617232 19617233 GC - SLC47A2 Frame_Shift_Del p.L117Gfs*88 0.24 TCGA-HQ-A5NE-01 17 27445166 27445166 C T MYO18A Silent p.L645L 0.30 TCGA-HQ-A5NE-01 17 29162399 29162399 C G ATAD5 Missense_Mutation p.L434V 0.11 tolerated(0.92) benign(0.011) TCGA-HQ-A5NE-01 17 29162762 29162762 C T ATAD5 Silent p.L555L 0.08 TCGA-HQ-A5NE-01 17 32964998 32964998 C A TMEM132E Nonsense_Mutation p.S901* 0.22 TCGA-HQ-A5NE-01 17 33476016 33476016 G A UNC45B Missense_Mutation p.D65N 0.06 deleterious(0) probably_damaging(0.978) TCGA-HQ-A5NE-01 17 35880662 35880662 C A SYNRG Missense_Mutation p.L1252F 0.25 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 17 36963063 36963063 G A CWC25 Missense_Mutation p.S286F 0.08 deleterious(0.01) possibly_damaging(0.642) TCGA-HQ-A5NE-01 17 36963158 36963158 C T CWC25 Missense_Mutation p.M254I 0.08 tolerated(0.39) benign(0) TCGA-HQ-A5NE-01 17 37607485 37607485 G A MED1 5'UTR 0.38 TCGA-HQ-A5NE-01 17 37886529 37886529 G A MIEN1 Silent p.F35F 0.41 TCGA-HQ-A5NE-01 17 40725555 40725555 C G PSMC3IP Missense_Mutation p.E142Q 0.03 tolerated(0.12) benign(0.217) TCGA-HQ-A5NE-01 17 41926330 41926330 G A CD300LG Intron 0.16 TCGA-HQ-A5NE-01 17 42248327 42248327 G A ASB16 Missense_Mutation p.R57Q 0.07 tolerated(0.22) benign(0.013) TCGA-HQ-A5NE-01 17 43922962 43922962 G A SPPL2C Silent p.L230L 0.16 TCGA-HQ-A5NE-01 17 44845959 44845959 G A WNT3 Silent p.L265L 0.20 TCGA-HQ-A5NE-01 17 46058863 46058863 C G CDK5RAP3 Missense_Mutation p.L506V 0.04 tolerated_low_confidence(0.32) benign(0.012) TCGA-HQ-A5NE-01 17 46865306 46865306 C T TTLL6 Missense_Mutation p.E486K 0.06 deleterious(0) probably_damaging(0.992) TCGA-HQ-A5NE-01 17 47700113 47700113 C T SPOP Silent p.E20E 0.07 TCGA-HQ-A5NE-01 17 48435844 48435844 G A XYLT2 Missense_Mutation p.E740K 0.12 deleterious(0.02) possibly_damaging(0.471) TCGA-HQ-A5NE-01 17 5086481 5086481 G A ZNF594 Silent p.F357F 0.34 TCGA-HQ-A5NE-01 17 56342254 56342254 G C LPO Missense_Mutation p.E480Q 0.30 tolerated(0.2) possibly_damaging(0.769) TCGA-HQ-A5NE-01 17 56598156 56598156 G A SEPT4 Missense_Mutation p.P457L 0.19 tolerated(0.16) benign(0.017) TCGA-HQ-A5NE-01 17 60758471 60758471 G A MRC2 Missense_Mutation p.E895K 0.21 tolerated(0.16) benign(0.284) TCGA-HQ-A5NE-01 17 61432635 61432635 C G TANC2 Silent p.L748L 0.20 TCGA-HQ-A5NE-01 17 61904004 61904004 C T FTSJ3 Silent p.L32L 0.19 TCGA-HQ-A5NE-01 17 64062905 64062905 C G CEP112 Missense_Mutation p.E316Q 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-HQ-A5NE-01 17 71205645 71205645 G A FAM104A 3'UTR 0.23 TCGA-HQ-A5NE-01 17 73125084 73125084 C G ARMC7 Missense_Mutation p.S183C 0.12 deleterious(0.01) possibly_damaging(0.67) TCGA-HQ-A5NE-01 17 74071057 74071057 C T GALR2 Silent p.L31L 0.26 TCGA-HQ-A5NE-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.26 deleterious(0.04) possibly_damaging(0.898) TCGA-HQ-A5NE-01 17 76677092 76677092 C G CYTH1 Missense_Mutation p.E308D 0.05 deleterious(0.02) benign(0.091) TCGA-HQ-A5NE-01 17 77757654 77757654 G A CBX2 Missense_Mutation p.E138K 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-HQ-A5NE-01 17 79078328 79078328 C T BAIAP2 Silent p.L361L 0.25 TCGA-HQ-A5NE-01 17 80018777 80018777 G A DUS1L Silent p.I301I 0.10 TCGA-HQ-A5NE-01 17 8393718 8393718 C G MYH10 Missense_Mutation p.E1608D 0.36 benign(0.003) TCGA-HQ-A5NE-01 18 19263551 19263551 G T ABHD3 Intron 0.10 TCGA-HQ-A5NE-01 18 33785188 33785188 C T MOCOS Silent p.I389I 0.09 TCGA-HQ-A5NE-01 18 34261481 34261481 G A FHOD3 Missense_Mutation p.E465K 0.13 deleterious_low_confidence(0.05) probably_damaging(0.99) TCGA-HQ-A5NE-01 18 67563145 67563145 G A CD226 Silent p.I173I 0.06 TCGA-HQ-A5NE-01 18 67857949 67857949 A T RTTN Missense_Mutation p.S338R 0.30 tolerated(0.07) benign(0.222) TCGA-HQ-A5NE-01 18 9256469 9256469 G C ANKRD12 Missense_Mutation p.K1068N 0.14 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 18 9595103 9595103 G C PPP4R1 Nonsense_Mutation p.S34* 0.09 TCGA-HQ-A5NE-01 19 10916641 10916641 C T DNM2 Nonsense_Mutation p.Q515* 0.13 TCGA-HQ-A5NE-01 19 11304226 11304226 G A KANK2 Missense_Mutation p.P177L 0.08 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 19 15739220 15739220 C T CYP4F8 RNA 0.18 TCGA-HQ-A5NE-01 19 15904881 15904881 C G OR10H5 Missense_Mutation p.S8C 0.19 tolerated(0.1) benign(0.003) TCGA-HQ-A5NE-01 19 16791370 16791370 G A TMEM38A Missense_Mutation p.M148I 0.23 deleterious(0) benign(0.438) TCGA-HQ-A5NE-01 19 19162550 19162550 G C ARMC6 Missense_Mutation p.Q133H 0.39 deleterious(0.01) possibly_damaging(0.592) TCGA-HQ-A5NE-01 19 1986490 1986490 G C BTBD2 Silent p.T525T 0.16 TCGA-HQ-A5NE-01 19 30101462 30101462 G A POP4 Silent p.K69K 0.11 TCGA-HQ-A5NE-01 19 36218514 36218514 C G KMT2B Silent p.L1431L 0.06 TCGA-HQ-A5NE-01 19 37618824 37618824 G C ZNF420 Missense_Mutation p.E311Q 0.08 tolerated(0.37) benign(0.406) TCGA-HQ-A5NE-01 19 38579410 38579410 G A SIPA1L3 Silent p.V528V 0.07 TCGA-HQ-A5NE-01 19 38652999 38652999 C T SIPA1L3 Silent p.N1256N 0.29 TCGA-HQ-A5NE-01 19 38655116 38655116 C G SIPA1L3 Intron 0.28 TCGA-HQ-A5NE-01 19 38958420 38958420 G A RYR1 Missense_Mutation p.D1117N 0.23 probably_damaging(0.994) TCGA-HQ-A5NE-01 19 39220041 39220041 C G ACTN4 Missense_Mutation p.S902C 0.24 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 19 39884239 39884239 G A MED29 Missense_Mutation p.E129K 0.08 deleterious(0.04) possibly_damaging(0.874) TCGA-HQ-A5NE-01 19 40408120 40408120 G A FCGBP Missense_Mutation p.P1534L 0.15 benign(0.183) TCGA-HQ-A5NE-01 19 40742005 40742005 C T AKT2 Missense_Mutation p.E323K 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-HQ-A5NE-01 19 41111007 41111007 C T LTBP4 Missense_Mutation p.P173L 0.22 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 19 41282877 41282877 C T MIA Nonsense_Mutation p.Q89* 0.24 TCGA-HQ-A5NE-01 19 41283382 41283382 C G MIA 3'UTR 0.18 TCGA-HQ-A5NE-01 19 41313073 41313073 G C EGLN2 Missense_Mutation p.E332Q 0.30 tolerated(0.09) benign(0.11) TCGA-HQ-A5NE-01 19 41356272 41356272 C G CYP2A6 Missense_Mutation p.L20F 0.12 benign(0.048) TCGA-HQ-A5NE-01 19 42219034 42219034 G C CEACAM5 Missense_Mutation p.R190T 0.32 deleterious(0) probably_damaging(0.991) TCGA-HQ-A5NE-01 19 44469162 44469162 G A ZNF221 Missense_Mutation p.D48N 0.05 tolerated(0.08) benign(0.381) TCGA-HQ-A5NE-01 19 44676286 44676286 G A ZNF226 Missense_Mutation p.E21K 0.06 deleterious(0) probably_damaging(0.998) TCGA-HQ-A5NE-01 19 44933102 44933102 A C ZNF229 Missense_Mutation p.H618Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 19 44933410 44933410 G C ZNF229 Missense_Mutation p.L516V 0.08 tolerated(0.1) benign(0.07) TCGA-HQ-A5NE-01 19 44933783 44933783 G T ZNF229 Missense_Mutation p.N391K 0.20 tolerated(0.29) benign(0.175) TCGA-HQ-A5NE-01 19 44934665 44934665 G C ZNF229 Missense_Mutation p.F97L 0.05 tolerated(0.32) benign(0) TCGA-HQ-A5NE-01 19 45179640 45179640 C T CEACAM19 Silent p.I174I 0.23 TCGA-HQ-A5NE-01 19 45540711 45540711 C G RELB Missense_Mutation p.S468C 0.08 deleterious(0.02) benign(0.078) TCGA-HQ-A5NE-01 19 45541150 45541150 C T RELB 3'UTR 0.18 TCGA-HQ-A5NE-01 19 45805728 45805728 G C MARK4 Silent p.L673L 0.26 TCGA-HQ-A5NE-01 19 46319799 46319799 C G SYMPK Missense_Mutation p.E1099Q 0.08 tolerated(0.13) benign(0.397) TCGA-HQ-A5NE-01 19 46387755 46387755 C G IRF2BP1 Silent p.L426L 0.06 TCGA-HQ-A5NE-01 19 46388386 46388386 C A IRF2BP1 Missense_Mutation p.R216L 0.09 deleterious(0.01) possibly_damaging(0.726) TCGA-HQ-A5NE-01 19 46388427 46388427 C G IRF2BP1 Missense_Mutation p.Q202H 0.05 deleterious(0.01) benign(0.046) TCGA-HQ-A5NE-01 19 46623545 46623545 C T IGFL3 3'UTR 0.11 TCGA-HQ-A5NE-01 19 4817639 4817639 C T TICAM1 Missense_Mutation p.E251K 0.06 deleterious(0) possibly_damaging(0.754) TCGA-HQ-A5NE-01 19 48598822 48598822 G A PLA2G4C Missense_Mutation p.S213F 0.09 deleterious(0) benign(0.269) TCGA-HQ-A5NE-01 19 49548558 49548558 C G CGB5 3'UTR 0.13 TCGA-HQ-A5NE-01 19 50102766 50102766 C G PRR12 Missense_Mutation p.P1306A 0.23 possibly_damaging(0.728) TCGA-HQ-A5NE-01 19 53085640 53085640 G A ZNF701 Missense_Mutation p.E176K 0.09 tolerated(0.52) benign(0.116) TCGA-HQ-A5NE-01 19 53572453 53572453 C G ZNF160 Missense_Mutation p.R445T 0.20 tolerated(0.16) probably_damaging(0.987) TCGA-HQ-A5NE-01 19 53572838 53572838 C G ZNF160 Missense_Mutation p.E317Q 0.21 tolerated(0.14) benign(0.017) TCGA-HQ-A5NE-01 19 53573345 53573345 C T ZNF160 Missense_Mutation p.D148N 0.20 tolerated(0.11) benign(0.03) TCGA-HQ-A5NE-01 19 53573408 53573408 C T ZNF160 Missense_Mutation p.E127K 0.25 tolerated(1) benign(0.05) TCGA-HQ-A5NE-01 19 53668301 53668301 G C ZNF665 Missense_Mutation p.S481C 0.32 deleterious(0) probably_damaging(0.944) TCGA-HQ-A5NE-01 19 53669003 53669003 G A ZNF665 Missense_Mutation p.S247L 0.36 tolerated(0.06) possibly_damaging(0.905) TCGA-HQ-A5NE-01 19 57176268 57176268 C T ZNF835 Missense_Mutation p.R100Q 0.35 tolerated(0.21) benign(0.001) TCGA-HQ-A5NE-01 19 6710813 6710813 C G C3 Missense_Mutation p.R508P 0.11 deleterious(0) probably_damaging(0.996) TCGA-HQ-A5NE-01 19 9086108 9086108 C T MUC16 Missense_Mutation p.E1903K 0.12 unknown(0) TCGA-HQ-A5NE-01 19 9087894 9087894 C T MUC16 Missense_Mutation p.M1307I 0.08 unknown(0) TCGA-HQ-A5NE-01 19 9965402 9965402 G A OLFM2 Silent p.N275N 0.10 TCGA-HQ-A5NE-01 1 111730280 111730280 C T DENND2D Missense_Mutation p.E455K 0.31 deleterious(0) unknown(0) TCGA-HQ-A5NE-01 1 115229399 115229399 C G AMPD1 Missense_Mutation p.Q149H 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-HQ-A5NE-01 1 12837424 12837424 C T PRAMEF12 Silent p.L378L 0.09 TCGA-HQ-A5NE-01 1 144854539 144854539 C T PDE4DIP Missense_Mutation p.E2311K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-HQ-A5NE-01 1 144854588 144854588 C T PDE4DIP Silent p.Q2294Q 0.13 TCGA-HQ-A5NE-01 1 145112489 145112489 G C SEC22B RNA 0.04 TCGA-HQ-A5NE-01 1 153271632 153271632 G A PGLYRP3 Silent p.F268F 0.09 TCGA-HQ-A5NE-01 1 156214522 156214522 C G PAQR6 Missense_Mutation p.E158Q 0.14 deleterious_low_confidence(0.01) benign(0.004) TCGA-HQ-A5NE-01 1 158325087 158325087 C T CD1E Intron 0.30 TCGA-HQ-A5NE-01 1 159170611 159170611 G C CADM3 Missense_Mutation p.E400Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-HQ-A5NE-01 1 161494743 161494743 G T HSPA6 Nonsense_Mutation p.E99* 0.11 TCGA-HQ-A5NE-01 1 16528995 16528995 T C ARHGEF19 Missense_Mutation p.Q661R 0.47 deleterious(0.01) probably_damaging(0.919) TCGA-HQ-A5NE-01 1 16935175 16935175 C T NBPF1 5'UTR 0.08 TCGA-HQ-A5NE-01 1 17345319 17345319 G C SDHB 3'UTR 0.44 TCGA-HQ-A5NE-01 1 182845243 182845243 C G DHX9 Missense_Mutation p.S625C 0.36 deleterious(0) possibly_damaging(0.717) TCGA-HQ-A5NE-01 1 182909584 182909584 C T SHCBP1L Missense_Mutation p.R217K 0.14 tolerated(0.15) benign(0.035) TCGA-HQ-A5NE-01 1 183711301 183711301 G A RGL1 Silent p.V3V 0.12 TCGA-HQ-A5NE-01 1 186331458 186331458 G C TPR Missense_Mutation p.Q251E 0.17 benign(0.042) TCGA-HQ-A5NE-01 1 200969040 200969040 C T KIF21B Missense_Mutation p.E580K 0.11 tolerated(0.18) benign(0.16) TCGA-HQ-A5NE-01 1 207669573 207669573 C T CR1 5'Flank 0.26 TCGA-HQ-A5NE-01 1 213436150 213436150 C G RPS6KC1 Silent p.L1027L 0.13 TCGA-HQ-A5NE-01 1 214638267 214638267 G A PTPN14 5'UTR 0.50 TCGA-HQ-A5NE-01 1 214818325 214818325 G A CENPF Missense_Mutation p.M1804I 0.15 benign(0) TCGA-HQ-A5NE-01 1 218504365 218504365 G T RRP15 Missense_Mutation p.D261Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 1 220170650 220170650 G A EPRS Missense_Mutation p.S739F 0.11 tolerated(0.05) benign(0.106) TCGA-HQ-A5NE-01 1 226453303 226453303 C G LIN9 Missense_Mutation p.W339C 0.09 tolerated(0.16) benign(0.053) TCGA-HQ-A5NE-01 1 228494156 228494156 G A OBSCN Missense_Mutation p.E4872K 0.38 benign(0.026) TCGA-HQ-A5NE-01 1 228594121 228594121 C T TRIM11 Missense_Mutation p.E48K 0.32 tolerated(0.69) benign(0.004) TCGA-HQ-A5NE-01 1 228879347 228879347 G C RHOU Missense_Mutation p.E213Q 0.08 tolerated(0.07) probably_damaging(0.932) TCGA-HQ-A5NE-01 1 229633913 229633913 A G NUP133 Silent p.F263F 0.40 TCGA-HQ-A5NE-01 1 234742887 234742887 G C IRF2BP2 Missense_Mutation p.S587W 0.13 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HQ-A5NE-01 1 234743155 234743155 G C IRF2BP2 Missense_Mutation p.L498V 0.10 tolerated(0.65) possibly_damaging(0.899) TCGA-HQ-A5NE-01 1 234744668 234744668 G C IRF2BP2 Silent p.L191L 0.14 TCGA-HQ-A5NE-01 1 235345287 235345287 C G ARID4B Missense_Mutation p.E983Q 0.27 tolerated_low_confidence(0.21) benign(0.149) TCGA-HQ-A5NE-01 1 247768986 247768986 C T OR2G3 Silent p.F33F 0.08 TCGA-HQ-A5NE-01 1 248569430 248569430 C A OR2T1 Silent p.I45I 0.32 TCGA-HQ-A5NE-01 1 26371561 26371561 C A SLC30A2 Missense_Mutation p.K66N 0.45 deleterious(0.05) benign(0.326) TCGA-HQ-A5NE-01 1 27087512 27087513 - C ARID1A Frame_Shift_Ins p.S698Vfs*119 0.27 TCGA-HQ-A5NE-01 1 33117606 33117606 G A RBBP4 Missense_Mutation p.M36I 0.06 tolerated(1) benign(0.013) TCGA-HQ-A5NE-01 1 36521387 36521387 G T AGO3 3'UTR 0.45 TCGA-HQ-A5NE-01 1 36933215 36933215 G A CSF3R Silent p.G634G 0.12 TCGA-HQ-A5NE-01 1 37947376 37947376 G C ZC3H12A Missense_Mutation p.R253P 0.35 deleterious(0) probably_damaging(0.996) TCGA-HQ-A5NE-01 1 38272598 38272598 C T YRDC Silent p.Q185Q 0.05 TCGA-HQ-A5NE-01 1 42047484 42047484 C T HIVEP3 Silent p.Q995Q 0.09 TCGA-HQ-A5NE-01 1 45474321 45474321 C A HECTD3 Missense_Mutation p.Q375H 0.39 deleterious(0.04) possibly_damaging(0.663) TCGA-HQ-A5NE-01 1 63902619 63902619 C G ALG6 Missense_Mutation p.F484L 0.34 tolerated(1) benign(0.003) TCGA-HQ-A5NE-01 1 85113158 85113158 C G SSX2IP Missense_Mutation p.L601F 0.05 tolerated_low_confidence(0.12) benign(0.054) TCGA-HQ-A5NE-01 1 89885815 89885815 C T GBP1P1 RNA 0.33 TCGA-HQ-A5NE-01 1 900540 900540 C T KLHL17 Missense_Mutation p.P633L 0.37 deleterious(0) unknown(0) TCGA-HQ-A5NE-01 1 91851308 91851308 A G HFM1 Missense_Mutation p.I193T 0.34 tolerated_low_confidence(0.73) benign(0.001) TCGA-HQ-A5NE-01 20 168640 168640 C A DEFB128 Nonsense_Mutation p.E57* 0.28 TCGA-HQ-A5NE-01 20 19665954 19665954 G T SLC24A3 Nonsense_Mutation p.E425* 0.16 TCGA-HQ-A5NE-01 20 20123581 20123581 G A C20orf26 Missense_Mutation p.E314K 0.33 tolerated(0.2) benign(0.002) TCGA-HQ-A5NE-01 20 2463999 2463999 G A ZNF343 Silent p.L536L 0.30 TCGA-HQ-A5NE-01 20 31025091 31025091 G A ASXL1 Missense_Mutation p.D1526N 0.05 deleterious(0) probably_damaging(0.971) TCGA-HQ-A5NE-01 20 31619480 31619480 C T BPIFB6 Silent p.L9L 0.29 TCGA-HQ-A5NE-01 20 31660538 31660538 G C BPIFB3 Missense_Mutation p.G447A 0.19 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 20 31961944 31961944 A T CDK5RAP1 Silent p.R394R 0.07 TCGA-HQ-A5NE-01 20 3581669 3581669 C G ATRN Nonsense_Mutation p.S1214* 0.08 TCGA-HQ-A5NE-01 20 3674135 3674135 C T SIGLEC1 Missense_Mutation p.R1156Q 0.11 tolerated(1) benign(0.007) TCGA-HQ-A5NE-01 20 36874441 36874441 G C KIAA1755 Missense_Mutation p.Q31E 0.22 deleterious(0) probably_damaging(0.997) TCGA-HQ-A5NE-01 20 45912381 45912381 G C ZMYND8 Missense_Mutation p.I272M 0.11 deleterious(0.05) benign(0.192) TCGA-HQ-A5NE-01 20 5081368 5081368 T A TMEM230 3'UTR 0.35 TCGA-HQ-A5NE-01 20 8719992 8719992 C G PLCB1 Missense_Mutation p.Q765E 0.28 tolerated(0.19) benign(0) TCGA-HQ-A5NE-01 21 45222205 45222205 G C RRP1 Missense_Mutation p.E354Q 0.17 tolerated(0.54) benign(0.11) TCGA-HQ-A5NE-01 22 18844939 18844939 C T BCRP7 RNA 0.10 TCGA-HQ-A5NE-01 22 25331507 25331507 G C TMEM211 Missense_Mutation p.F61L 0.06 tolerated(0.28) benign(0.137) TCGA-HQ-A5NE-01 22 31493042 31493042 G A SMTN Silent p.S695S 0.12 TCGA-HQ-A5NE-01 22 36710361 36710361 C G MYH9 Silent p.L461L 0.09 TCGA-HQ-A5NE-01 22 36914924 36914924 C T EIF3D Missense_Mutation p.D249N 0.24 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 22 38323565 38323565 C T MICALL1 Missense_Mutation p.S538L 0.11 deleterious(0) probably_damaging(0.997) TCGA-HQ-A5NE-01 22 39713471 39713471 C T RPL3 Silent p.K120K 0.11 TCGA-HQ-A5NE-01 22 40661855 40661855 C G TNRC6B Missense_Mutation p.Q541E 0.17 tolerated(1) benign(0.254) TCGA-HQ-A5NE-01 22 42486610 42486610 C T NDUFA6 Missense_Mutation p.V73M 0.17 tolerated(0.08) possibly_damaging(0.728) TCGA-HQ-A5NE-01 22 43286959 43286959 C T PACSIN2 Silent p.L149L 0.16 TCGA-HQ-A5NE-01 22 46805004 46805004 C G CELSR1 Silent p.L1705L 0.11 TCGA-HQ-A5NE-01 22 50721224 50721224 G T PLXNB2 Missense_Mutation p.S968Y 0.08 deleterious(0.04) possibly_damaging(0.83) TCGA-HQ-A5NE-01 22 50962742 50962742 C G SCO2 Silent p.L33L 0.16 TCGA-HQ-A5NE-01 2 103148936 103148936 G C SLC9A4 Missense_Mutation p.R729T 0.08 tolerated(0.64) benign(0.004) TCGA-HQ-A5NE-01 2 103281576 103281576 C G SLC9A2 Missense_Mutation p.F257L 0.26 tolerated(0.29) possibly_damaging(0.84) TCGA-HQ-A5NE-01 2 11053434 11053434 C G KCNF1 Missense_Mutation p.I294M 0.27 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 2 125204409 125204409 G A CNTNAP5 Silent p.S271S 0.07 TCGA-HQ-A5NE-01 2 152320601 152320601 G C RIF1 Missense_Mutation p.D1523H 0.14 deleterious(0.02) benign(0.114) TCGA-HQ-A5NE-01 2 152321825 152321825 G C RIF1 Missense_Mutation p.E1931Q 0.09 tolerated_low_confidence(0.15) benign(0.011) TCGA-HQ-A5NE-01 2 158485173 158485173 C T ACVR1C 5'UTR 0.21 TCGA-HQ-A5NE-01 2 167263148 167263148 G A SCN7A Silent p.L1331L 0.27 TCGA-HQ-A5NE-01 2 168098352 168098352 G C XIRP2 Missense_Mutation p.E370Q 0.23 probably_damaging(0.999) TCGA-HQ-A5NE-01 2 172291691 172291691 C T DCAF17 Silent p.V75V 0.37 TCGA-HQ-A5NE-01 2 178769850 178769850 G A PDE11A Missense_Mutation p.S379L 0.22 deleterious(0.02) possibly_damaging(0.879) TCGA-HQ-A5NE-01 2 179599144 179599144 G A TTN Missense_Mutation p.S5136L 0.09 TCGA-HQ-A5NE-01 2 179600588 179600588 C G TTN Missense_Mutation p.R4862T 0.16 TCGA-HQ-A5NE-01 2 179623721 179623721 C T TTN Silent p.L3431L 0.18 TCGA-HQ-A5NE-01 2 180008498 180008498 G A SESTD1 Nonsense_Mutation p.R224* 0.10 TCGA-HQ-A5NE-01 2 18112855 18112855 G A KCNS3 Missense_Mutation p.V194M 0.08 tolerated(0.14) benign(0.243) TCGA-HQ-A5NE-01 2 183616883 183616883 G A DNAJC10 Missense_Mutation p.D507N 0.12 tolerated(0.05) probably_damaging(1) TCGA-HQ-A5NE-01 2 188243735 188243735 C T CALCRL Silent p.L144L 0.16 TCGA-HQ-A5NE-01 2 191841679 191841679 C T STAT1 Missense_Mutation p.R649H 0.07 deleterious(0.04) possibly_damaging(0.602) TCGA-HQ-A5NE-01 2 191847151 191847151 G A STAT1 Missense_Mutation p.L514F 0.13 deleterious(0.02) probably_damaging(1) TCGA-HQ-A5NE-01 2 206305191 206305191 G A PARD3B Missense_Mutation p.D885N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-HQ-A5NE-01 2 209103910 209103910 C T IDH1 Missense_Mutation p.D347N 0.28 deleterious_low_confidence(0) benign(0.323) TCGA-HQ-A5NE-01 2 215876760 215876760 G A ABCA12 Missense_Mutation p.P686S 0.11 tolerated(0.05) benign(0.071) TCGA-HQ-A5NE-01 2 220099551 220099551 C T ANKZF1 Missense_Mutation p.S403L 0.13 tolerated(0.11) benign(0.04) TCGA-HQ-A5NE-01 2 227967903 227967903 C T COL4A4 Missense_Mutation p.G276E 0.18 probably_damaging(0.995) TCGA-HQ-A5NE-01 2 228890136 228890136 G A SPHKAP Missense_Mutation p.L139F 0.14 deleterious(0.02) possibly_damaging(0.66) TCGA-HQ-A5NE-01 2 242194815 242194815 G A HDLBP Nonsense_Mutation p.Q352* 0.20 TCGA-HQ-A5NE-01 2 27804130 27804130 G C C2orf16 Missense_Mutation p.R1564T 0.08 deleterious(0.01) unknown(0) TCGA-HQ-A5NE-01 2 33482535 33482535 G A LTBP1 Silent p.L784L 0.16 TCGA-HQ-A5NE-01 2 39944458 39944458 C G TMEM178A 3'UTR 0.25 TCGA-HQ-A5NE-01 2 56419630 56419630 C T CCDC85A Nonsense_Mutation p.Q99* 0.17 TCGA-HQ-A5NE-01 2 61020772 61020772 G A PAPOLG Missense_Mutation p.E564K 0.10 tolerated(0.74) benign(0.045) TCGA-HQ-A5NE-01 2 64126634 64126634 C T VPS54 Missense_Mutation p.D903N 0.18 tolerated(0.07) benign(0.054) TCGA-HQ-A5NE-01 2 70315482 70315482 G A PCBP1 Missense_Mutation p.D203N 0.09 tolerated(0.58) benign(0.086) TCGA-HQ-A5NE-01 2 74749885 74749885 C T DQX1 Silent p.L439L 0.11 TCGA-HQ-A5NE-01 2 79971665 79971665 C G CTNNA2 Silent p.L85L 0.22 TCGA-HQ-A5NE-01 2 98737874 98737874 G A VWA3B Missense_Mutation p.E219K 0.09 tolerated(0.8) benign(0.002) TCGA-HQ-A5NE-01 3 112732196 112732196 C T C3orf17 Silent p.V132V 0.11 TCGA-HQ-A5NE-01 3 118624485 118624485 T C IGSF11 Missense_Mutation p.I221V 0.37 tolerated(0.14) possibly_damaging(0.54) TCGA-HQ-A5NE-01 3 119528974 119528974 G A NR1I2 Silent p.R127R 0.10 TCGA-HQ-A5NE-01 3 122259339 122259339 C T PARP9 Missense_Mutation p.R617Q 0.27 tolerated(1) benign(0.001) TCGA-HQ-A5NE-01 3 127872439 127872439 C T EEFSEC Missense_Mutation p.T30I 0.20 tolerated(0.56) benign(0.048) TCGA-HQ-A5NE-01 3 137882265 137882265 G A DBR1 Silent p.L289L 0.07 TCGA-HQ-A5NE-01 3 148575267 148575267 G A CPB1 Silent p.V335V 0.10 TCGA-HQ-A5NE-01 3 15116005 15116005 G A ZFYVE20 Missense_Mutation p.R547W 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.513) TCGA-HQ-A5NE-01 3 168833870 168833870 G A MECOM Missense_Mutation p.S474L 0.09 deleterious(0.01) possibly_damaging(0.86) TCGA-HQ-A5NE-01 3 170244723 170244723 C A SLC7A14 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-HQ-A5NE-01 3 178936091 178936091 G C PIK3CA Missense_Mutation p.E545Q 0.12 tolerated(0.06) possibly_damaging(0.796) TCGA-HQ-A5NE-01 3 194061849 194061849 C G CPN2 Missense_Mutation p.S528T 0.10 tolerated(0.19) benign(0.004) TCGA-HQ-A5NE-01 3 194180210 194180210 C T ATP13A3 Missense_Mutation p.D157N 0.29 deleterious(0.05) benign(0.002) TCGA-HQ-A5NE-01 3 25833190 25833190 G A OXSM Missense_Mutation p.D227N 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-HQ-A5NE-01 3 37056028 37056028 C T MLH1 Silent p.F261F 0.37 TCGA-HQ-A5NE-01 3 38924744 38924744 G A SCN11A Silent p.L1067L 0.11 TCGA-HQ-A5NE-01 3 44968213 44968213 C A ZDHHC3 Missense_Mutation p.G318W 0.08 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-HQ-A5NE-01 3 46001008 46001008 G C FYCO1 Nonsense_Mutation p.S1155* 0.23 TCGA-HQ-A5NE-01 3 47459101 47459101 G C SCAP Nonsense_Mutation p.S888* 0.31 TCGA-HQ-A5NE-01 3 48040148 48040148 G C MAP4 Nonsense_Mutation p.S68* 0.09 TCGA-HQ-A5NE-01 3 50232062 50232062 C T GNAT1 Silent p.L279L 0.16 TCGA-HQ-A5NE-01 3 52535240 52535240 C G STAB1 Missense_Mutation p.S46W 0.10 deleterious(0) possibly_damaging(0.786) TCGA-HQ-A5NE-01 3 57902669 57902669 C T SLMAP Silent p.L691L 0.14 TCGA-HQ-A5NE-01 3 9786060 9786060 G C BRPF1 Missense_Mutation p.G930R 0.40 deleterious(0.02) possibly_damaging(0.681) TCGA-HQ-A5NE-01 3 99568944 99568944 G C FILIP1L Missense_Mutation p.Q526E 0.17 deleterious(0.01) benign(0.338) TCGA-HQ-A5NE-01 4 109782094 109782094 G A COL25A1 Nonsense_Mutation p.Q411* 0.16 TCGA-HQ-A5NE-01 4 110885639 110885639 C A EGF Silent p.L507L 0.11 TCGA-HQ-A5NE-01 4 114163337 114163337 G A ANK2 Missense_Mutation p.R288Q 0.10 probably_damaging(0.959) TCGA-HQ-A5NE-01 4 126237661 126237661 C T FAT4 Missense_Mutation p.S32L 0.14 benign(0) TCGA-HQ-A5NE-01 4 148594917 148594917 C T PRMT10 Silent p.V149V 0.19 TCGA-HQ-A5NE-01 4 151773795 151773795 G T LRBA Missense_Mutation p.Q1023K 0.05 tolerated_low_confidence(0.89) benign(0.001) TCGA-HQ-A5NE-01 4 170611701 170611701 G C CLCN3 Missense_Mutation p.M209I 0.19 tolerated(0.81) possibly_damaging(0.813) TCGA-HQ-A5NE-01 4 170913357 170913357 C A MFAP3L Silent p.V134V 0.14 TCGA-HQ-A5NE-01 4 173150865 173150865 G C GALNTL6 Missense_Mutation p.R66T 0.20 deleterious(0.01) benign(0.434) TCGA-HQ-A5NE-01 4 59444 59444 C T ZNF595 Missense_Mutation p.S42F 0.04 tolerated_low_confidence(1) probably_damaging(0.998) TCGA-HQ-A5NE-01 4 6865527 6865527 C T KIAA0232 Nonsense_Mutation p.Q1140* 0.18 TCGA-HQ-A5NE-01 4 76439460 76439460 G A RCHY1 Nonsense_Mutation p.Q13* 0.13 TCGA-HQ-A5NE-01 4 87726518 87726518 T G PTPN13 Silent p.L2252L 0.31 TCGA-HQ-A5NE-01 4 87735666 87735666 G T PTPN13 Nonsense_Mutation p.E2479* 0.12 TCGA-HQ-A5NE-01 5 112175509 112175509 G C APC Missense_Mutation p.Q1406H 0.28 probably_damaging(0.91) TCGA-HQ-A5NE-01 5 114859998 114859998 C G FEM1C 3'UTR 0.19 TCGA-HQ-A5NE-01 5 140167546 140167546 C T PCDHA1 Silent p.D557D 0.35 TCGA-HQ-A5NE-01 5 140228251 140228251 G A PCDHA9 Silent p.A57A 0.39 TCGA-HQ-A5NE-01 5 140755945 140755945 G A PCDHGA6 Silent p.K765K 0.11 TCGA-HQ-A5NE-01 5 1489971 1489971 G C LPCAT1 Missense_Mutation p.L166V 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-HQ-A5NE-01 5 16672834 16672834 C G MYO10 Missense_Mutation p.R1758P 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-HQ-A5NE-01 5 167833324 167833324 C G WWC1 Missense_Mutation p.L238V 0.10 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 5 176314610 176314610 C T HK3 Missense_Mutation p.R481H 0.34 tolerated(0.15) benign(0.004) TCGA-HQ-A5NE-01 5 176963494 176963494 G A FAM193B Missense_Mutation p.S314F 0.24 deleterious(0.02) probably_damaging(0.969) TCGA-HQ-A5NE-01 5 205402 205402 C A CCDC127 3'UTR 0.11 TCGA-HQ-A5NE-01 5 2748724 2748724 C T IRX2 Silent p.P366P 0.07 TCGA-HQ-A5NE-01 5 31302286 31302286 G A CDH6 Missense_Mutation p.D294N 0.09 deleterious(0) possibly_damaging(0.852) TCGA-HQ-A5NE-01 5 32089317 32089317 G C PDZD2 Missense_Mutation p.Q1921H 0.05 deleterious(0.01) possibly_damaging(0.838) TCGA-HQ-A5NE-01 5 34909006 34909006 G C RAD1 Missense_Mutation p.S238C 0.11 deleterious(0) probably_damaging(0.997) TCGA-HQ-A5NE-01 5 3599703 3599703 C A IRX1 Missense_Mutation p.P214Q 0.13 tolerated(0.25) possibly_damaging(0.9) TCGA-HQ-A5NE-01 5 41159294 41159294 C T C6 Silent p.K582K 0.07 TCGA-HQ-A5NE-01 5 42719577 42719577 G - GHR 3'UTR 0.22 TCGA-HQ-A5NE-01 5 43292661 43292661 C T HMGCS1 Missense_Mutation p.R463K 0.21 tolerated(0.06) possibly_damaging(0.494) TCGA-HQ-A5NE-01 5 5463094 5463094 G A KIAA0947 Missense_Mutation p.G1216E 0.08 deleterious(0.01) benign(0.081) TCGA-HQ-A5NE-01 5 59982971 59982971 G A DEPDC1B Silent p.F44F 0.23 TCGA-HQ-A5NE-01 5 6378513 6378513 G A MED10 Silent p.D28D 0.09 TCGA-HQ-A5NE-01 5 7789842 7789842 C A ADCY2 Missense_Mutation p.R853S 0.20 deleterious(0) probably_damaging(0.957) TCGA-HQ-A5NE-01 5 7878223 7878223 C G MTRR Missense_Mutation p.Q217E 0.08 tolerated(0.37) benign(0.007) TCGA-HQ-A5NE-01 6 10586243 10586243 C - GCNT2 Intron 0.25 TCGA-HQ-A5NE-01 6 108041779 108041779 G A SCML4 Intron 0.11 TCGA-HQ-A5NE-01 6 111912578 111912578 G A TRAF3IP2 Nonsense_Mutation p.Q238* 0.23 TCGA-HQ-A5NE-01 6 112575357 112575357 C T LAMA4 5'UTR 0.10 TCGA-HQ-A5NE-01 6 126210683 126210683 G A NCOA7 Missense_Mutation p.E495K 0.14 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-HQ-A5NE-01 6 128321405 128321405 C G PTPRK Intron 0.30 TCGA-HQ-A5NE-01 6 137477973 137477973 C T IL22RA2 Missense_Mutation p.M72I 0.20 tolerated_low_confidence(0.41) benign(0) TCGA-HQ-A5NE-01 6 155116167 155116167 C A SCAF8 Missense_Mutation p.P167Q 0.23 deleterious(0) unknown(0) TCGA-HQ-A5NE-01 6 159654401 159654401 C G FNDC1 Missense_Mutation p.Q953E 0.15 tolerated_low_confidence(0.14) unknown(0) TCGA-HQ-A5NE-01 6 17688732 17688732 G A NUP153 Missense_Mutation p.R77C 0.06 tolerated(0.08) benign(0.093) TCGA-HQ-A5NE-01 6 27777950 27777950 C T HIST1H3H Silent p.T33T 0.08 TCGA-HQ-A5NE-01 6 29637994 29637994 G C MOG Intron 0.21 TCGA-HQ-A5NE-01 6 30585591 30585591 G T MRPS18B 5'UTR 0.17 TCGA-HQ-A5NE-01 6 30955046 30955046 C T MUC21 Missense_Mutation p.S365F 0.06 tolerated(0.05) unknown(0) TCGA-HQ-A5NE-01 6 31118537 31118537 C A CCHCR1 Nonsense_Mutation p.E356* 0.28 TCGA-HQ-A5NE-01 6 31731225 31731225 G A SAPCD1 Missense_Mutation p.D50N 0.07 deleterious(0) probably_damaging(0.997) TCGA-HQ-A5NE-01 6 33422949 33422949 G A ZBTB9 Silent p.Q24Q 0.21 TCGA-HQ-A5NE-01 6 35705102 35705102 G A ARMC12 Missense_Mutation p.E73K 0.21 tolerated(0.53) benign(0.002) TCGA-HQ-A5NE-01 6 42613323 42613323 G A UBR2 Missense_Mutation p.E802K 0.07 deleterious(0.02) possibly_damaging(0.566) TCGA-HQ-A5NE-01 6 43738886 43738886 G C VEGFA Missense_Mutation p.R148T 0.45 deleterious_low_confidence(0) benign(0.167) TCGA-HQ-A5NE-01 6 43738906 43738906 G T VEGFA Nonsense_Mutation p.E155* 0.51 TCGA-HQ-A5NE-01 6 592511 592511 G C EXOC2 Missense_Mutation p.L384V 0.07 tolerated(0.28) possibly_damaging(0.899) TCGA-HQ-A5NE-01 6 64422316 64422316 C T PHF3 Missense_Mutation p.S1611L 0.18 tolerated(0.06) benign(0.002) TCGA-HQ-A5NE-01 6 75898223 75898223 G C COL12A1 Silent p.L284L 0.18 TCGA-HQ-A5NE-01 6 99283767 99283767 G T POU3F2 Missense_Mutation p.G340C 0.22 deleterious(0.01) probably_damaging(1) TCGA-HQ-A5NE-01 7 100382347 100382347 C G ZAN Missense_Mutation p.S2241C 0.11 unknown(0) TCGA-HQ-A5NE-01 7 102106607 102106607 G A LRWD1 Missense_Mutation p.D108N 0.09 deleterious(0) possibly_damaging(0.798) TCGA-HQ-A5NE-01 7 107167758 107167758 G C COG5 Silent p.L185L 0.22 TCGA-HQ-A5NE-01 7 121652139 121652139 G A PTPRZ1 Silent p.L1013L 0.09 TCGA-HQ-A5NE-01 7 121652343 121652343 G A PTPRZ1 Silent p.L1081L 0.16 TCGA-HQ-A5NE-01 7 128097616 128097616 G A HILPDA 3'UTR 0.44 TCGA-HQ-A5NE-01 7 128850951 128850951 G A SMO Missense_Mutation p.V600M 0.30 deleterious(0) probably_damaging(0.96) TCGA-HQ-A5NE-01 7 150389922 150389922 A G GIMAP2 Missense_Mutation p.N183S 0.13 tolerated(0.06) benign(0.165) TCGA-HQ-A5NE-01 7 150648640 150648640 G A KCNH2 Missense_Mutation p.A614V 0.11 deleterious(0) probably_damaging(0.997) TCGA-HQ-A5NE-01 7 152132791 152132791 C T KMT2C Silent p.P27P 0.25 TCGA-HQ-A5NE-01 7 23164805 23164805 G T KLHL7 Intron 0.43 TCGA-HQ-A5NE-01 7 38500984 38500984 G A AMPH Silent p.L306L 0.10 TCGA-HQ-A5NE-01 7 50450326 50450326 G A IKZF1 Silent p.E170E 0.10 TCGA-HQ-A5NE-01 7 5327439 5327439 G C SLC29A4 Splice_Site 0.21 TCGA-HQ-A5NE-01 7 64643356 64643356 C T INTS4L1 RNA 0.23 TCGA-HQ-A5NE-01 7 79846682 79846682 G C GNAI1 Missense_Mutation p.R313T 0.34 tolerated(0.06) benign(0.025) TCGA-HQ-A5NE-01 7 81596517 81596517 C T CACNA2D1 Missense_Mutation p.G824S 0.29 tolerated(0.67) benign(0.01) TCGA-HQ-A5NE-01 7 87196188 87196188 C G ABCB1 Missense_Mutation p.R148T 0.34 deleterious(0) probably_damaging(0.999) TCGA-HQ-A5NE-01 7 91726636 91726636 G C AKAP9 Missense_Mutation p.E3455Q 0.09 possibly_damaging(0.819) TCGA-HQ-A5NE-01 7 91842622 91842622 C T KRIT1 Missense_Mutation p.A638T 0.06 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 7 92761999 92761999 C G SAMD9L Missense_Mutation p.E1096Q 0.09 deleterious(0.01) possibly_damaging(0.804) TCGA-HQ-A5NE-01 7 98552868 98552868 G A TRRAP Missense_Mutation p.E1953K 0.26 probably_damaging(0.987) TCGA-HQ-A5NE-01 8 110455234 110455234 G A PKHD1L1 Missense_Mutation p.D1485N 0.28 tolerated(0.28) benign(0.003) TCGA-HQ-A5NE-01 8 124346180 124346180 G C ATAD2 Nonsense_Mutation p.S1139* 0.15 TCGA-HQ-A5NE-01 8 134144065 134144065 G A TG Silent p.L2624L 0.15 TCGA-HQ-A5NE-01 8 139164572 139164572 G A FAM135B Missense_Mutation p.P716S 0.17 tolerated(0.06) benign(0.005) TCGA-HQ-A5NE-01 8 141572697 141572697 C T AGO2 Missense_Mutation p.D125N 0.18 deleterious(0.03) possibly_damaging(0.873) TCGA-HQ-A5NE-01 8 145113543 145113543 G A OPLAH Silent p.F213F 0.12 TCGA-HQ-A5NE-01 8 23118196 23118196 G C CHMP7 3'UTR 0.29 TCGA-HQ-A5NE-01 8 23177557 23177557 C T LOXL2 Silent p.L437L 0.15 TCGA-HQ-A5NE-01 8 30703334 30703334 C G TEX15 Missense_Mutation p.R1067T 0.34 deleterious(0.03) benign(0.066) TCGA-HQ-A5NE-01 8 30889363 30889363 C T PURG Silent p.E312E 0.33 TCGA-HQ-A5NE-01 8 32463093 32463093 C A NRG1 Missense_Mutation p.R98S 0.31 deleterious(0) possibly_damaging(0.507) TCGA-HQ-A5NE-01 8 41556984 41556984 C T ANK1 Silent p.P889P 0.08 TCGA-HQ-A5NE-01 8 42042622 42042622 C G PLAT Missense_Mutation p.C203S 0.12 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 8 63492159 63492159 G CA NKAIN3 Frame_Shift_Ins p.G39Afs*103 0.09 TCGA-HQ-A5NE-01 8 82370637 82370637 C G FABP9 Missense_Mutation p.R127T 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-HQ-A5NE-01 8 86027434 86027434 C T LRRCC1 Missense_Mutation p.S215L 0.08 tolerated(0.31) benign(0.068) TCGA-HQ-A5NE-01 8 94934496 94934496 G C PDP1 Missense_Mutation p.R95T 0.10 tolerated(0.19) benign(0.01) TCGA-HQ-A5NE-01 8 9619112 9619112 C G TNKS Missense_Mutation p.I1080M 0.12 tolerated(0.14) possibly_damaging(0.77) TCGA-HQ-A5NE-01 9 100692518 100692518 C T HEMGN Missense_Mutation p.E387K 0.29 tolerated(0.13) possibly_damaging(0.801) TCGA-HQ-A5NE-01 9 100692572 100692572 C G HEMGN Missense_Mutation p.E369Q 0.29 deleterious(0.02) benign(0.154) TCGA-HQ-A5NE-01 9 113205938 113205938 C T SVEP1 Missense_Mutation p.R1509K 0.21 benign(0.004) TCGA-HQ-A5NE-01 9 114456513 114456513 C G C9orf84 Missense_Mutation p.E1041Q 0.18 tolerated(0.06) benign(0.012) TCGA-HQ-A5NE-01 9 117113216 117113216 G - AKNA Frame_Shift_Del p.A1049Pfs*123 0.19 TCGA-HQ-A5NE-01 9 117552670 117552670 G C TNFSF15 3'UTR 0.26 TCGA-HQ-A5NE-01 9 130422354 130422354 A - STXBP1 Frame_Shift_Del p.K98Nfs*22 0.20 TCGA-HQ-A5NE-01 9 131185100 131185100 C T CERCAM Intron 0.12 TCGA-HQ-A5NE-01 9 131186771 131186771 C T CERCAM Missense_Mutation p.S215F 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-HQ-A5NE-01 9 131191065 131191065 C T CERCAM Missense_Mutation p.H306Y 0.21 tolerated(1) benign(0.013) TCGA-HQ-A5NE-01 9 138662250 138662250 G A KCNT1 Missense_Mutation p.E576K 0.31 tolerated(0.11) benign(0.386) TCGA-HQ-A5NE-01 9 139412639 139412639 G A NOTCH1 Missense_Mutation p.S402L 0.24 tolerated(0.11) benign(0.021) TCGA-HQ-A5NE-01 9 139733489 139733489 C G RABL6 Missense_Mutation p.S471W 0.18 deleterious(0) probably_damaging(0.931) TCGA-HQ-A5NE-01 9 139811039 139811039 G C TRAF2 Missense_Mutation p.R217T 0.12 tolerated(0.05) possibly_damaging(0.497) TCGA-HQ-A5NE-01 9 139814689 139814689 G A TRAF2 Missense_Mutation p.E228K 0.10 tolerated(0.05) benign(0.043) TCGA-HQ-A5NE-01 9 139814838 139814838 G A TRAF2 Silent p.K277K 0.08 TCGA-HQ-A5NE-01 9 139815523 139815523 G A TRAF2 Missense_Mutation p.D332N 0.05 deleterious(0.01) benign(0.04) TCGA-HQ-A5NE-01 9 140196072 140196072 G A NRARP Silent p.L103L 0.11 TCGA-HQ-A5NE-01 9 14146806 14146806 G C NFIB Missense_Mutation p.S269R 0.13 deleterious(0.01) benign(0.227) TCGA-HQ-A5NE-01 9 19102739 19102739 G A HAUS6 5'UTR 0.28 TCGA-HQ-A5NE-01 9 19341064 19341064 G A DENND4C Missense_Mutation p.E937K 0.15 tolerated(0.54) benign(0.003) TCGA-HQ-A5NE-01 9 22451840 22451840 C T DMRTA1 Missense_Mutation p.S482F 0.17 deleterious(0.02) probably_damaging(0.921) TCGA-HQ-A5NE-01 9 6012421 6012421 C T RANBP6 Missense_Mutation p.D1063N 0.10 tolerated(0.66) benign(0.005) TCGA-HQ-A5NE-01 9 6486893 6486893 C G UHRF2 Missense_Mutation p.L489V 0.18 deleterious(0) probably_damaging(0.977) TCGA-HQ-A5NE-01 9 74526692 74526692 G A C9orf85 Silent p.Q14Q 0.11 TCGA-HQ-A5NE-01 9 88842816 88842816 A G C9orf153 Missense_Mutation p.F66L 0.13 tolerated(0.95) benign(0) TCGA-HQ-A5NE-01 9 89771598 89771598 G C C9orf170 Missense_Mutation p.L93F 0.35 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-HQ-A5NE-01 9 96425260 96425260 A C PHF2 Missense_Mutation p.E590D 0.24 tolerated(0.09) unknown(0) TCGA-HQ-A5NE-01 X 107084399 107084399 C T MID2 Silent p.A168A 0.12 TCGA-HQ-A5NE-01 X 12809712 12809712 G C PRPS2 Silent p.T32T 0.37 TCGA-HQ-A5NE-01 X 128947698 128947698 G C ZDHHC9 Missense_Mutation p.S210C 0.52 deleterious(0) probably_damaging(0.969) TCGA-HQ-A5NE-01 X 128948701 128948701 G A ZDHHC9 Silent p.L186L 0.71 TCGA-HQ-A5NE-01 X 140994669 140994669 T C MAGEC1 Silent p.S493S 0.14 TCGA-HQ-A5NE-01 X 151869719 151869719 G T MAGEA6 Missense_Mutation p.G137W 0.14 deleterious(0) probably_damaging(0.919) TCGA-HQ-A5NE-01 X 153073868 153073868 G A PDZD4 Silent p.I81I 0.14 TCGA-HQ-A5NE-01 X 153697780 153697780 G C PLXNA3 Missense_Mutation p.K1551N 0.52 deleterious(0) possibly_damaging(0.761) TCGA-HQ-A5NE-01 X 15809081 15809081 G A ZRSR2 Silent p.L22L 0.10 TCGA-HQ-A5NE-01 X 23693153 23693153 G C PRDX4 Missense_Mutation p.E136Q 0.56 tolerated(0.11) benign(0.011) TCGA-HQ-A5NE-01 X 3235240 3235240 C A MXRA5 Missense_Mutation p.G2161V 0.56 deleterious(0) probably_damaging(1) TCGA-HQ-A5NE-01 X 47045016 47045016 C T RBM10 Missense_Mutation p.S781L 0.40 deleterious(0) probably_damaging(0.991) TCGA-HQ-A5NE-01 X 53432727 53432727 G A SMC1A Silent p.T569T 0.55 TCGA-HQ-A5NE-01 X 66905906 66905906 G A AR Missense_Mutation p.R608Q 0.08 deleterious(0) possibly_damaging(0.802) TCGA-HQ-A5NE-01 X 89177430 89177430 C T TGIF2LX Missense_Mutation p.R116C 0.15 deleterious(0.01) benign(0) TCGA-HQ-A5NE-01 X 99955915 99955915 G A SYTL4 Nonsense_Mutation p.Q173* 0.15 TCGA-HQ-A5NE-01 Y 16733995 16733995 G T NLGN4Y 5'UTR 0.40 TCGA-K4-A3WS-01 10 11789413 11789413 A C ECHDC3 Missense_Mutation p.Q79P 0.17 tolerated(0.21) possibly_damaging(0.449) TCGA-K4-A3WS-01 10 27389109 27389109 C G ANKRD26 Missense_Mutation p.K49N 0.29 deleterious(0) probably_damaging(0.91) TCGA-K4-A3WS-01 10 38407718 38407718 G C ZNF37A Missense_Mutation p.G547R 0.17 tolerated(0.08) benign(0.016) TCGA-K4-A3WS-01 10 50854654 50854654 C G CHAT Silent p.L405L 0.23 TCGA-K4-A3WS-01 10 54048534 54048534 G C PRKG1 Missense_Mutation p.L586F 0.07 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WS-01 10 5494799 5494799 G A NET1 Intron 0.11 TCGA-K4-A3WS-01 10 61832871 61832871 C T ANK3 Missense_Mutation p.E2590K 0.25 probably_damaging(0.956) TCGA-K4-A3WS-01 10 70405499 70405499 C G TET1 Missense_Mutation p.L1005V 0.09 tolerated(0.49) benign(0.004) TCGA-K4-A3WS-01 10 88123752 88123752 T C GRID1 Missense_Mutation p.T61A 0.18 tolerated(0.13) benign(0.396) TCGA-K4-A3WS-01 10 93389666 93389666 G C PPP1R3C 3'UTR 0.15 TCGA-K4-A3WS-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.35 TCGA-K4-A3WS-01 10 97919613 97919613 G C ZNF518A RNA 0.16 TCGA-K4-A3WS-01 11 108192066 108192066 A G ATM Missense_Mutation p.E2164G 0.11 deleterious(0) probably_damaging(1) TCGA-K4-A3WS-01 11 117342581 117342581 C G DSCAML1 Intron 0.33 TCGA-K4-A3WS-01 11 117342611 117342611 C G DSCAML1 Missense_Mutation p.E1036Q 0.39 tolerated(0.07) probably_damaging(0.972) TCGA-K4-A3WS-01 11 119142469 119142469 C T CBL Silent p.L156L 0.39 TCGA-K4-A3WS-01 11 119216324 119216324 A C MFRP Silent p.S149S 0.15 TCGA-K4-A3WS-01 11 124294104 124294104 A G OR8B4 Missense_Mutation p.S222P 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.857) TCGA-K4-A3WS-01 11 124621381 124621381 C A VSIG2 Missense_Mutation p.D53Y 0.13 deleterious(0) probably_damaging(0.968) TCGA-K4-A3WS-01 11 16892712 16892712 G C PLEKHA7 Missense_Mutation p.T80R 0.15 deleterious(0) probably_damaging(0.938) TCGA-K4-A3WS-01 11 2356594 2356594 C G CD81-AS1 Intron 0.15 TCGA-K4-A3WS-01 11 2482805 2482805 C T KCNQ1 Intron 0.19 TCGA-K4-A3WS-01 11 2683183 2683183 C G KCNQ1 Intron 0.14 TCGA-K4-A3WS-01 11 32456366 32456366 G A WT1 Missense_Mutation p.R176C 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-K4-A3WS-01 11 46771875 46771875 G C CKAP5 Missense_Mutation p.R1885G 0.20 deleterious(0.01) possibly_damaging(0.667) TCGA-K4-A3WS-01 11 57118338 57118338 G A P2RX3 Missense_Mutation p.E270K 0.22 tolerated(0.72) benign(0.142) TCGA-K4-A3WS-01 11 61543557 61543557 C T MYRF Silent p.I447I 0.07 TCGA-K4-A3WS-01 11 62287326 62287326 C A AHNAK Missense_Mutation p.D4855Y 0.20 probably_damaging(0.998) TCGA-K4-A3WS-01 11 64889260 64889260 T A FAU Missense_Mutation p.E9V 0.10 deleterious(0.02) benign(0.209) TCGA-K4-A3WS-01 11 67412565 67412565 C G ACY3 Missense_Mutation p.M195I 0.25 deleterious(0.01) benign(0.386) TCGA-K4-A3WS-01 11 67412598 67412598 C A ACY3 Missense_Mutation p.Q184H 0.21 tolerated(0.14) benign(0.137) TCGA-K4-A3WS-01 11 68682376 68682376 G A IGHMBP2 Missense_Mutation p.G266E 0.13 deleterious(0) probably_damaging(0.996) TCGA-K4-A3WS-01 11 86519980 86519980 C G PRSS23 3'UTR 0.38 TCGA-K4-A3WS-01 11 93540715 93540715 G C MED17 Missense_Mutation p.E500Q 0.29 tolerated(0.22) benign(0.031) TCGA-K4-A3WS-01 11 95712801 95712801 C A MAML2 Nonsense_Mutation p.G928* 0.16 TCGA-K4-A3WS-01 12 107393604 107393605 CA AAT CRY1 Nonsense_Mutation p.Y287* 0.27 TCGA-K4-A3WS-01 12 109294368 109294368 G A DAO 3'UTR 0.37 TCGA-K4-A3WS-01 12 111779715 111779715 G T CUX2 Missense_Mutation p.V1173L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A3WS-01 12 112846122 112846122 C G RPL6 Missense_Mutation p.E86D 0.13 tolerated(0.1) benign(0.021) TCGA-K4-A3WS-01 12 113445538 113445538 C G OAS2 Missense_Mutation p.S562C 0.14 deleterious(0) probably_damaging(0.995) TCGA-K4-A3WS-01 12 21693375 21693375 G A GYS2 Missense_Mutation p.S593L 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-K4-A3WS-01 12 30833434 30833434 G C IPO8 Missense_Mutation p.I207M 0.14 deleterious(0) possibly_damaging(0.862) TCGA-K4-A3WS-01 12 46243532 46243532 G C ARID2 Missense_Mutation p.D629H 0.18 deleterious(0.02) possibly_damaging(0.707) TCGA-K4-A3WS-01 12 46245434 46245434 T C ARID2 Silent p.V1176V 0.10 TCGA-K4-A3WS-01 12 4735736 4735736 G A AKAP3 Nonsense_Mutation p.Q778* 0.06 TCGA-K4-A3WS-01 12 48737057 48737057 T C ZNF641 Missense_Mutation p.Q339R 0.24 tolerated(0.49) probably_damaging(0.988) TCGA-K4-A3WS-01 12 48879982 48879982 G C C12orf54 Missense_Mutation p.M29I 0.16 tolerated(0.32) benign(0) TCGA-K4-A3WS-01 12 49444981 49444981 C G KMT2D Missense_Mutation p.E829Q 0.18 unknown(0) TCGA-K4-A3WS-01 12 51347856 51347856 C A HIGD1C Missense_Mutation p.D25E 0.10 tolerated(1) possibly_damaging(0.689) TCGA-K4-A3WS-01 12 52379062 52379062 C G ACVR1B Missense_Mutation p.L397V 0.17 deleterious(0.03) benign(0.075) TCGA-K4-A3WS-01 12 53607931 53607931 A G RARG Missense_Mutation p.V242A 0.23 deleterious(0) probably_damaging(0.985) TCGA-K4-A3WS-01 12 53673530 53673530 G A ESPL1 Silent p.L793L 0.31 TCGA-K4-A3WS-01 12 56295623 56295623 G T WIBG 3'UTR 0.08 TCGA-K4-A3WS-01 12 56498355 56498355 C T PA2G4 5'UTR 0.30 TCGA-K4-A3WS-01 12 57114321 57114321 C G NACA Missense_Mutation p.L331F 0.07 deleterious_low_confidence(0) benign(0.021) TCGA-K4-A3WS-01 12 58162752 58162752 G A CYP27B1 5'Flank 0.26 TCGA-K4-A3WS-01 12 65088574 65088583 ATTTCTTGCG - RASSF3 Frame_Shift_Del p.N200Tfs*14 0.16 TCGA-K4-A3WS-01 12 79986470 79986470 G A PAWR Silent p.L314L 0.21 TCGA-K4-A3WS-01 12 81648681 81648681 G T ACSS3 Nonsense_Mutation p.E681* 0.12 TCGA-K4-A3WS-01 13 106124975 106124975 G C DAOA Missense_Mutation p.Q74H 0.13 deleterious_low_confidence(0) benign(0.387) TCGA-K4-A3WS-01 13 23904689 23904689 G T SACS Silent p.G4442G 0.22 TCGA-K4-A3WS-01 13 30107006 30107006 C G SLC7A1 Missense_Mutation p.E162Q 0.22 tolerated(0.08) benign(0.035) TCGA-K4-A3WS-01 13 32841467 32841467 A C FRY Missense_Mutation p.T2703P 0.12 deleterious(0) possibly_damaging(0.898) TCGA-K4-A3WS-01 13 32945213 32945213 C T BRCA2 Nonsense_Mutation p.Q2870* 0.18 TCGA-K4-A3WS-01 13 36049441 36049441 A G MAB21L1 Missense_Mutation p.S279P 0.11 deleterious(0) benign(0.01) TCGA-K4-A3WS-01 13 38153448 38153448 C G POSTN Missense_Mutation p.G570A 0.15 tolerated(0.1) probably_damaging(0.974) TCGA-K4-A3WS-01 13 51950240 51950240 C G INTS6 Missense_Mutation p.R558T 0.31 deleterious(0) probably_damaging(0.991) TCGA-K4-A3WS-01 13 98828982 98828982 C T RNF113B Missense_Mutation p.G170E 0.18 deleterious(0.02) possibly_damaging(0.889) TCGA-K4-A3WS-01 14 21058969 21058969 C G RNASE12 5'UTR 0.43 TCGA-K4-A3WS-01 14 24769358 24769358 C T NOP9 Silent p.R66R 0.10 TCGA-K4-A3WS-01 14 34985450 34985450 G T EAPP 3'UTR 0.44 TCGA-K4-A3WS-01 14 56746399 56746399 C G PELI2 Missense_Mutation p.I71M 0.21 deleterious(0.04) possibly_damaging(0.562) TCGA-K4-A3WS-01 14 68129250 68129250 C T VTI1B Missense_Mutation p.E40K 0.15 deleterious(0.02) probably_damaging(0.974) TCGA-K4-A3WS-01 14 75018986 75018986 C G LTBP2 Missense_Mutation p.D435H 0.07 deleterious(0.02) possibly_damaging(0.607) TCGA-K4-A3WS-01 14 75230761 75230761 C G YLPM1 Missense_Mutation p.S190C 0.16 unknown(0) TCGA-K4-A3WS-01 14 92537344 92537344 G T ATXN3 Nonsense_Mutation p.S309* 0.42 TCGA-K4-A3WS-01 14 93709011 93709011 C A BTBD7 Nonsense_Mutation p.E1003* 0.40 TCGA-K4-A3WS-01 15 24922473 24922473 G T NPAP1 Missense_Mutation p.V487F 0.11 tolerated(0.08) probably_damaging(0.954) TCGA-K4-A3WS-01 15 41687143 41687143 C A NDUFAF1 Nonsense_Mutation p.E225* 0.21 TCGA-K4-A3WS-01 15 43738684 43738684 C T TP53BP1 Missense_Mutation p.G981R 0.29 tolerated(0.42) benign(0.018) TCGA-K4-A3WS-01 15 48626677 48626677 G A DUT Silent p.A161A 0.12 TCGA-K4-A3WS-01 15 49800544 49800544 A C FAM227B Silent p.G292G 0.12 TCGA-K4-A3WS-01 15 51289655 51289655 G A AP4E1 Missense_Mutation p.E827K 0.12 tolerated_low_confidence(0.26) benign(0.003) TCGA-K4-A3WS-01 15 75190013 75190013 C T MPI Missense_Mutation p.S405L 0.08 tolerated(0.15) benign(0.002) TCGA-K4-A3WS-01 15 80467381 80467381 G T FAH Silent p.L287L 0.14 TCGA-K4-A3WS-01 15 86273898 86273898 T A AKAP13 Silent p.A2418A 0.19 TCGA-K4-A3WS-01 15 89391184 89391184 G A ACAN Silent p.K549K 0.11 TCGA-K4-A3WS-01 15 99491937 99491937 T G IGF1R Missense_Mutation p.L1241R 0.09 deleterious(0) probably_damaging(0.958) TCGA-K4-A3WS-01 16 1831516 1831516 C G SPSB3 Intron 0.14 TCGA-K4-A3WS-01 16 30665636 30665636 G C PRR14 Missense_Mutation p.D212H 0.23 deleterious_low_confidence(0.03) benign(0.045) TCGA-K4-A3WS-01 16 67166717 67166717 C T C16orf70 Intron 0.12 TCGA-K4-A3WS-01 16 67514921 67514921 C T ATP6V0D1 Silent p.L23L 0.25 TCGA-K4-A3WS-01 16 67578265 67578265 C T FAM65A Silent p.L908L 0.28 TCGA-K4-A3WS-01 16 786283 786283 G C NARFL Nonsense_Mutation p.S141* 0.11 TCGA-K4-A3WS-01 16 87367589 87367589 C A FBXO31 Missense_Mutation p.A434S 0.09 tolerated(0.24) benign(0.023) TCGA-K4-A3WS-01 16 88643559 88643559 G C ZC3H18 Missense_Mutation p.D10H 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-K4-A3WS-01 16 89977723 89977723 G C TCF25 3'UTR 0.16 TCGA-K4-A3WS-01 17 17919559 17919559 G A ATPAF2 3'Flank 0.26 TCGA-K4-A3WS-01 17 19461004 19461004 C G SLC47A1 Intron 0.11 TCGA-K4-A3WS-01 17 33427979 33427979 T G RAD51D Missense_Mutation p.Q347P 0.22 deleterious_low_confidence(0.02) benign(0.008) TCGA-K4-A3WS-01 17 34958603 34958603 G C MRM1 Missense_Mutation p.E122Q 0.08 tolerated(0.1) possibly_damaging(0.522) TCGA-K4-A3WS-01 17 35591979 35591979 C G ACACA Missense_Mutation p.E1053Q 0.23 tolerated(1) benign(0.047) TCGA-K4-A3WS-01 17 37599809 37599809 G T MED1 Missense_Mutation p.L69I 0.13 tolerated(0.2) probably_damaging(0.957) TCGA-K4-A3WS-01 17 4080500 4080500 G A ANKFY1 Missense_Mutation p.S941L 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-K4-A3WS-01 17 4080558 4080558 G A ANKFY1 Nonsense_Mutation p.Q922* 0.32 TCGA-K4-A3WS-01 17 41063350 41063350 C T G6PC Silent p.F327F 0.08 TCGA-K4-A3WS-01 17 41105755 41105755 C G AARSD1 Missense_Mutation p.E332Q 0.11 deleterious(0.03) benign(0.059) TCGA-K4-A3WS-01 17 41203122 41203122 G T BRCA1 Missense_Mutation p.L1785I 0.16 deleterious(0) possibly_damaging(0.699) TCGA-K4-A3WS-01 17 43923859 43923859 G A SPPL2C Silent p.Q529Q 0.16 TCGA-K4-A3WS-01 17 60629727 60629727 A G TLK2 Missense_Mutation p.K199R 0.13 tolerated(0.31) benign(0.009) TCGA-K4-A3WS-01 17 62272330 62272330 C T TEX2 Silent p.R590R 0.10 TCGA-K4-A3WS-01 17 63010911 63010911 T C GNA13 Missense_Mutation p.R200G 0.28 deleterious(0) probably_damaging(0.914) TCGA-K4-A3WS-01 17 66247008 66247008 C G AMZ2 Missense_Mutation p.F119L 0.10 deleterious(0) possibly_damaging(0.637) TCGA-K4-A3WS-01 17 663330 663330 G C GLOD4 3'UTR 0.17 TCGA-K4-A3WS-01 17 68129040 68129055 TAGCCAAAGATAACTT - KCNJ16 Frame_Shift_Del p.A272Rfs*4 0.11 TCGA-K4-A3WS-01 17 72588357 72588357 C A C17orf77 Missense_Mutation p.P58T 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.803) TCGA-K4-A3WS-01 17 72588358 72588358 C G C17orf77 Missense_Mutation p.P58R 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.904) TCGA-K4-A3WS-01 17 72915769 72915769 C T USH1G Missense_Mutation p.E388K 0.15 tolerated(0.05) benign(0.029) TCGA-K4-A3WS-01 17 73498743 73498743 A T CASKIN2 Silent p.P804P 0.33 TCGA-K4-A3WS-01 17 73780818 73780818 G A UNK 5'Flank 0.12 TCGA-K4-A3WS-01 17 74005731 74005731 C T EVPL Silent p.K1185K 0.06 TCGA-K4-A3WS-01 17 7710807 7710807 G C DNAH2 Missense_Mutation p.R3211P 0.08 probably_damaging(0.997) TCGA-K4-A3WS-01 17 79846256 79846256 C G ALYREF Missense_Mutation p.G214A 0.35 tolerated(0.06) possibly_damaging(0.78) TCGA-K4-A3WS-01 18 2939525 2939525 C T LPIN2 Missense_Mutation p.E259K 0.53 deleterious(0.04) probably_damaging(0.947) TCGA-K4-A3WS-01 18 43319618 43319618 C T SLC14A1 Missense_Mutation p.L369F 0.20 deleterious(0) possibly_damaging(0.851) TCGA-K4-A3WS-01 18 55319266 55319266 C T ATP8B1 Missense_Mutation p.G1134S 0.07 deleterious(0) probably_damaging(0.998) TCGA-K4-A3WS-01 19 10883223 10883223 G A DNM2 Missense_Mutation p.E102K 0.13 deleterious(0.03) benign(0.226) TCGA-K4-A3WS-01 19 12595589 12595589 G T ZNF709 5'UTR 0.15 TCGA-K4-A3WS-01 19 14037643 14037643 C G CC2D1A Missense_Mutation p.Q695E 0.23 deleterious(0.01) benign(0.118) TCGA-K4-A3WS-01 19 14910225 14910225 C T OR7C1 Missense_Mutation p.G242S 0.10 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-K4-A3WS-01 19 16601209 16601209 C T CALR3 Silent p.L122L 0.33 TCGA-K4-A3WS-01 19 17382464 17382464 G C BABAM1 Missense_Mutation p.G115A 0.14 tolerated(0.05) probably_damaging(0.955) TCGA-K4-A3WS-01 19 19339266 19339266 C G NCAN Nonsense_Mutation p.S946* 0.10 TCGA-K4-A3WS-01 19 21992472 21992472 C T ZNF43 Missense_Mutation p.E123K 0.05 tolerated(0.14) possibly_damaging(0.562) TCGA-K4-A3WS-01 19 33110200 33110200 G A ANKRD27 Missense_Mutation p.S658L 0.07 tolerated(0.43) benign(0.307) TCGA-K4-A3WS-01 19 34818975 34818975 C G KIAA0355 Silent p.T341T 0.16 TCGA-K4-A3WS-01 19 3548011 3548011 C A MFSD12 Silent p.V224V 0.11 TCGA-K4-A3WS-01 19 36213583 36213591 CCTCCCTCT - KMT2B In_Frame_Del p.L896_L898del 0.12 TCGA-K4-A3WS-01 19 36727883 36727883 G C ZNF146 Missense_Mutation p.E181Q 0.49 deleterious(0) possibly_damaging(0.796) TCGA-K4-A3WS-01 19 38189439 38189439 T G ZNF607 Missense_Mutation p.K531N 0.43 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WS-01 19 39866329 39866329 C G SAMD4B Missense_Mutation p.S236C 0.08 deleterious(0) probably_damaging(0.968) TCGA-K4-A3WS-01 19 39976916 39976916 G A TIMM50 Silent p.T297T 0.12 TCGA-K4-A3WS-01 19 42192066 42192066 C G CEACAM7 Missense_Mutation p.R10T 0.24 tolerated(0.3) possibly_damaging(0.811) TCGA-K4-A3WS-01 19 44571048 44571048 C T ZNF223 Missense_Mutation p.S356F 0.05 deleterious(0.02) possibly_damaging(0.766) TCGA-K4-A3WS-01 19 47151947 47151947 C T DACT3 Missense_Mutation p.S561N 0.07 tolerated(0.12) benign(0.383) TCGA-K4-A3WS-01 19 47773894 47773894 G C CCDC9 Missense_Mutation p.R345T 0.09 deleterious(0.02) benign(0.259) TCGA-K4-A3WS-01 19 50947074 50947074 G A MYBPC2 Splice_Site p.X378_splice 0.45 TCGA-K4-A3WS-01 19 51728804 51728804 G T CD33 Missense_Mutation p.G123V 0.20 deleterious(0.01) probably_damaging(0.94) TCGA-K4-A3WS-01 19 56701308 56701308 C T ZSCAN5B Missense_Mutation p.R459H 0.48 deleterious(0.01) probably_damaging(0.986) TCGA-K4-A3WS-01 19 5684824 5684824 C G HSD11B1L Intron 0.07 TCGA-K4-A3WS-01 19 57335683 57335683 C G PEG3 Missense_Mutation p.C114S 0.07 deleterious(0.01) possibly_damaging(0.572) TCGA-K4-A3WS-01 19 855684 855684 C T ELANE Missense_Mutation p.R163C 0.17 deleterious(0.05) possibly_damaging(0.811) TCGA-K4-A3WS-01 1 108679440 108679440 T C SLC25A24 Silent p.P423P 0.19 TCGA-K4-A3WS-01 1 112308496 112308496 C G DDX20 Missense_Mutation p.Q484E 0.11 tolerated(0.42) benign(0.004) TCGA-K4-A3WS-01 1 1262843 1262843 G A GLTPD1 Silent p.L115L 0.23 TCGA-K4-A3WS-01 1 147090920 147090920 G A BCL9 Missense_Mutation p.G320E 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A3WS-01 1 149785202 149785202 G T HIST2H3D Missense_Mutation p.T12N 0.08 deleterious_low_confidence(0.01) benign(0.002) TCGA-K4-A3WS-01 1 151337485 151337485 C G SELENBP1 Missense_Mutation p.Q391H 0.30 deleterious(0) probably_damaging(0.992) TCGA-K4-A3WS-01 1 152883923 152883941 CCAGGTCCAAGACATTCAA - IVL Frame_Shift_Del p.V552Pfs*12 0.24 TCGA-K4-A3WS-01 1 155170384 155170384 G T THBS3 Missense_Mutation p.F522L 0.11 tolerated(0.06) benign(0.012) TCGA-K4-A3WS-01 1 157514143 157514143 C G FCRL5 Missense_Mutation p.W251C 0.07 deleterious(0.05) probably_damaging(0.971) TCGA-K4-A3WS-01 1 157667580 157667580 C G FCRL3 Missense_Mutation p.S143T 0.11 tolerated(0.43) benign(0.058) TCGA-K4-A3WS-01 1 158059372 158059372 G T KIRREL Silent p.V375V 0.34 TCGA-K4-A3WS-01 1 159166681 159166681 C G CADM3 Silent p.V295V 0.08 TCGA-K4-A3WS-01 1 159923348 159923348 C T SLAMF9 Missense_Mutation p.E48K 0.10 deleterious(0) probably_damaging(0.914) TCGA-K4-A3WS-01 1 160253381 160253381 G A PEX19 Missense_Mutation p.S40F 0.21 deleterious(0.04) benign(0.018) TCGA-K4-A3WS-01 1 160395046 160395046 C T VANGL2 Missense_Mutation p.R482C 0.06 tolerated(0.19) probably_damaging(0.966) TCGA-K4-A3WS-01 1 160769632 160769632 G A LY9 Missense_Mutation p.D72N 0.11 tolerated(0.21) possibly_damaging(0.496) TCGA-K4-A3WS-01 1 161928235 161928235 G A ATF6 Splice_Site p.X602_splice 0.07 TCGA-K4-A3WS-01 1 171073096 171073096 G A FMO3 Silent p.L101L 0.16 TCGA-K4-A3WS-01 1 175052985 175052985 T A TNN Missense_Mutation p.L383Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-K4-A3WS-01 1 175087923 175087923 C A TNN Missense_Mutation p.N871K 0.06 tolerated(0.66) benign(0.049) TCGA-K4-A3WS-01 1 177133537 177133537 G A ASTN1 Silent p.F92F 0.21 TCGA-K4-A3WS-01 1 178427347 178427347 G T RASAL2 Missense_Mutation p.D974Y 0.12 deleterious(0) probably_damaging(0.929) TCGA-K4-A3WS-01 1 181754895 181754895 A T CACNA1E Missense_Mutation p.Q1909L 0.07 deleterious(0.03) benign(0.003) TCGA-K4-A3WS-01 1 185113039 185113039 G C TRMT1L Missense_Mutation p.R260G 0.19 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WS-01 1 203188877 203188877 G T CHIT1 Nonsense_Mutation p.S277* 0.15 TCGA-K4-A3WS-01 1 205027351 205027351 C T CNTN2 Silent p.S86S 0.13 TCGA-K4-A3WS-01 1 205290642 205290642 C A NUAK2 Missense_Mutation p.A39S 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-K4-A3WS-01 1 205744175 205744175 C T RAB7L1 5'UTR 0.21 TCGA-K4-A3WS-01 1 207110743 207110743 C G PIGR Missense_Mutation p.D248H 0.15 deleterious(0) probably_damaging(0.98) TCGA-K4-A3WS-01 1 207200869 207200869 C A C1orf116 Missense_Mutation p.M25I 0.10 tolerated(0.06) benign(0.059) TCGA-K4-A3WS-01 1 209974736 209974736 A T IRF6 Missense_Mutation p.V8D 0.21 deleterious(0) probably_damaging(0.993) TCGA-K4-A3WS-01 1 214185050 214185050 G A PROX1 Missense_Mutation p.D674N 0.43 deleterious(0) probably_damaging(0.994) TCGA-K4-A3WS-01 1 223994610 223994610 G A TP53BP2 Nonsense_Mutation p.Q138* 0.31 TCGA-K4-A3WS-01 1 224599169 224599169 C G WDR26 Missense_Mutation p.G373A 0.07 tolerated(0.1) probably_damaging(0.931) TCGA-K4-A3WS-01 1 233120095 233120095 G T PCNXL2 Silent p.G2123G 0.14 TCGA-K4-A3WS-01 1 241665791 241665791 G T FH Silent p.V396V 0.19 TCGA-K4-A3WS-01 1 241798263 241798263 C T CHML Missense_Mutation p.R269Q 0.17 tolerated(0.18) benign(0.014) TCGA-K4-A3WS-01 1 24483775 24483775 G A IFNLR1 Nonsense_Mutation p.Q470* 0.14 TCGA-K4-A3WS-01 1 247902718 247902718 C T OR14K1 Silent p.L268L 0.10 TCGA-K4-A3WS-01 1 28176864 28176864 C G PPP1R8 Silent p.V321V 0.09 TCGA-K4-A3WS-01 1 32051353 32051353 G A TINAGL1 Splice_Site p.X365_splice 0.21 TCGA-K4-A3WS-01 1 32503563 32503563 C G KHDRBS1 Missense_Mutation p.P345A 0.08 deleterious(0.05) benign(0.006) TCGA-K4-A3WS-01 1 32713099 32713099 C T FAM167B Missense_Mutation p.S26F 0.33 deleterious(0) possibly_damaging(0.548) TCGA-K4-A3WS-01 1 33360370 33360370 C G TMEM54 3'UTR 0.37 TCGA-K4-A3WS-01 1 36301437 36301437 G C AGO4 Missense_Mutation p.E523Q 0.13 deleterious(0) probably_damaging(0.969) TCGA-K4-A3WS-01 1 36301505 36301505 G A AGO4 Silent p.V545V 0.11 TCGA-K4-A3WS-01 1 47078790 47078790 G C MOB3C Missense_Mutation p.F120L 0.21 deleterious(0) possibly_damaging(0.788) TCGA-K4-A3WS-01 1 61869892 61869892 G C NFIA Missense_Mutation p.E443Q 0.09 deleterious(0.03) possibly_damaging(0.796) TCGA-K4-A3WS-01 1 84880418 84880418 G A DNASE2B Missense_Mutation p.R318H 0.22 tolerated(0.32) benign(0.005) TCGA-K4-A3WS-01 1 9323690 9323690 G A H6PD Missense_Mutation p.V380M 0.09 tolerated(0.14) benign(0.142) TCGA-K4-A3WS-01 20 10030184 10030184 C G ANKEF1 Missense_Mutation p.P323A 0.08 tolerated(0.14) probably_damaging(0.955) TCGA-K4-A3WS-01 20 19977359 19977359 C G RIN2 Missense_Mutation p.S795C 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-K4-A3WS-01 20 25484683 25484683 C T NINL Missense_Mutation p.E256K 0.22 tolerated(0.37) benign(0.16) TCGA-K4-A3WS-01 20 2842542 2842542 C A VPS16 Missense_Mutation p.P331T 0.23 deleterious(0) probably_damaging(0.994) TCGA-K4-A3WS-01 20 30419638 30419638 C T MYLK2 Silent p.N519N 0.08 TCGA-K4-A3WS-01 20 30419888 30419888 C T MYLK2 Silent p.R553R 0.32 TCGA-K4-A3WS-01 20 31573573 31573573 A T SUN5 Missense_Mutation p.L289Q 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-K4-A3WS-01 20 31644371 31644371 G A BPIFB3 Missense_Mutation p.E50K 0.35 deleterious(0) benign(0.001) TCGA-K4-A3WS-01 20 33568378 33568378 C G MYH7B Intron 0.11 TCGA-K4-A3WS-01 20 35064619 35064619 C T DLGAP4 Silent p.Y369Y 0.20 TCGA-K4-A3WS-01 20 36641207 36641207 C A TTI1 Nonsense_Mutation p.G338* 0.14 TCGA-K4-A3WS-01 20 3765233 3765233 T C CENPB 3'UTR 0.33 TCGA-K4-A3WS-01 20 40049171 40049171 C G CHD6 Missense_Mutation p.R2035T 0.16 deleterious_low_confidence(0.01) benign(0.131) TCGA-K4-A3WS-01 20 40052303 40052303 C T CHD6 Missense_Mutation p.V1462M 0.06 deleterious(0) probably_damaging(0.939) TCGA-K4-A3WS-01 20 43851768 43851768 G A SEMG2 Missense_Mutation p.E499K 0.07 tolerated(0.07) unknown(0) TCGA-K4-A3WS-01 20 44330835 44330835 A C WFDC13 Missense_Mutation p.K25Q 0.15 tolerated(0.12) possibly_damaging(0.479) TCGA-K4-A3WS-01 20 44574444 44574444 G C PCIF1 Missense_Mutation p.M421I 0.07 tolerated(0.15) benign(0.008) TCGA-K4-A3WS-01 20 47990502 47990502 A C KCNB1 Missense_Mutation p.M532R 0.08 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-K4-A3WS-01 20 49493030 49493030 C G BCAS4 Silent p.T198T 0.12 TCGA-K4-A3WS-01 20 62575994 62575994 C T UCKL1 Missense_Mutation p.E250K 0.17 tolerated(0.19) benign(0.006) TCGA-K4-A3WS-01 20 9496203 9496203 G C LAMP5 Silent p.T56T 0.10 TCGA-K4-A3WS-01 21 28304481 28304481 C T ADAMTS5 Missense_Mutation p.E631K 0.15 deleterious(0) possibly_damaging(0.632) TCGA-K4-A3WS-01 21 31709409 31709409 T C KRTAP27-1 Missense_Mutation p.E193G 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-K4-A3WS-01 21 38098555 38098555 C T SIM2 Silent p.L227L 0.15 TCGA-K4-A3WS-01 21 46021124 46021124 C T KRTAP10-7 Silent p.C201C 0.18 TCGA-K4-A3WS-01 21 47695171 47695171 C G MCM3AP Missense_Mutation p.E643Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-K4-A3WS-01 22 19511148 19511148 C T CLDN5 Missense_Mutation p.D296N 0.12 tolerated_low_confidence(0.07) benign(0.018) TCGA-K4-A3WS-01 22 24717999 24717999 G A SPECC1L Missense_Mutation p.E351K 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-K4-A3WS-01 22 29966393 29966393 C A NIPSNAP1 Splice_Site p.X76_splice 0.16 TCGA-K4-A3WS-01 22 30980647 30980647 G C PES1 Missense_Mutation p.F142L 0.12 deleterious(0.03) benign(0.134) TCGA-K4-A3WS-01 22 32044244 32044244 G C PISD Missense_Mutation p.T55S 0.62 tolerated_low_confidence(0.09) benign(0.179) TCGA-K4-A3WS-01 22 35723369 35723369 G A TOM1 Missense_Mutation p.E252K 0.12 deleterious(0) probably_damaging(0.911) TCGA-K4-A3WS-01 22 38120564 38120564 C G TRIOBP Missense_Mutation p.I667M 0.27 deleterious_low_confidence(0.01) benign(0.17) TCGA-K4-A3WS-01 2 109086923 109086924 - G GCC2 Frame_Shift_Ins p.E381Gfs*6 0.22 TCGA-K4-A3WS-01 2 110881615 110881615 G C NPHP1 Missense_Mutation p.T652R 0.07 tolerated(0.45) benign(0.168) TCGA-K4-A3WS-01 2 112944892 112944892 G T FBLN7 Missense_Mutation p.G377C 0.08 deleterious(0.01) probably_damaging(1) TCGA-K4-A3WS-01 2 135884205 135884205 G A RAB3GAP1 Missense_Mutation p.E318K 0.28 tolerated(0.12) benign(0.005) TCGA-K4-A3WS-01 2 138414501 138414501 G T THSD7B Missense_Mutation p.S1417I 0.19 tolerated(0.15) unknown(0) TCGA-K4-A3WS-01 2 166896082 166896082 C T SCN1A Missense_Mutation p.E814K 0.20 deleterious(0) benign(0.236) TCGA-K4-A3WS-01 2 178095532 178095532 G C NFE2L2 Missense_Mutation p.P600R 0.09 deleterious(0.04) benign(0.258) TCGA-K4-A3WS-01 2 179323266 179323266 G A DFNB59 Silent p.K193K 0.10 TCGA-K4-A3WS-01 2 179413895 179413895 T A TTN Missense_Mutation p.N30820Y 0.10 TCGA-K4-A3WS-01 2 179613062 179613062 C T TTN Intron 0.42 TCGA-K4-A3WS-01 2 179616411 179616411 G T TTN Intron 0.15 TCGA-K4-A3WS-01 2 200820940 200820940 G A C2orf47 Missense_Mutation p.S140N 0.24 tolerated(0.43) benign(0.021) TCGA-K4-A3WS-01 2 239234477 239234477 C T TRAF3IP1 Nonsense_Mutation p.Q74* 0.19 TCGA-K4-A3WS-01 2 26702466 26702466 C T OTOF Silent p.R656R 0.30 TCGA-K4-A3WS-01 2 27351315 27351315 C A ABHD1 Silent p.R41R 0.21 TCGA-K4-A3WS-01 2 31560610 31560610 C G XDH Missense_Mutation p.R1283P 0.29 deleterious(0) probably_damaging(1) TCGA-K4-A3WS-01 2 32740790 32740790 C G BIRC6 Missense_Mutation p.L3768V 0.31 possibly_damaging(0.604) TCGA-K4-A3WS-01 2 44051155 44051155 G C ABCG5 Silent p.V407V 0.24 TCGA-K4-A3WS-01 2 56603022 56603022 A G CCDC85A Silent p.G508G 0.15 TCGA-K4-A3WS-01 2 65299062 65299073 CTGCCAGATTCC - CEP68 In_Frame_Del p.D280_P283del 0.10 TCGA-K4-A3WS-01 2 71058238 71058238 T C CD207 Silent p.P310P 0.13 TCGA-K4-A3WS-01 2 73868318 73868337 ACTGTCCACAAAGAGATGAA - NAT8 Frame_Shift_Del p.F140* 0.16 TCGA-K4-A3WS-01 2 9475228 9475228 C G ASAP2 Missense_Mutation p.Q257E 0.20 deleterious(0.01) possibly_damaging(0.855) TCGA-K4-A3WS-01 3 10419989 10419989 T C ATP2B2 Missense_Mutation p.K383R 0.11 tolerated(0.05) probably_damaging(0.998) TCGA-K4-A3WS-01 3 10858095 10858095 G A SLC6A11 Missense_Mutation p.E49K 0.19 tolerated(0.12) probably_damaging(0.986) TCGA-K4-A3WS-01 3 109047785 109047785 G T DPPA4 Missense_Mutation p.P277Q 0.15 deleterious(0) probably_damaging(1) TCGA-K4-A3WS-01 3 122420202 122420202 T G PARP14 Missense_Mutation p.V934G 0.14 tolerated(0.15) probably_damaging(0.997) TCGA-K4-A3WS-01 3 122459597 122459597 C A HSPBAP1 Missense_Mutation p.M354I 0.07 tolerated(0.41) benign(0.001) TCGA-K4-A3WS-01 3 123451827 123451827 G C MYLK Missense_Mutation p.R478G 0.12 tolerated(0.17) probably_damaging(0.999) TCGA-K4-A3WS-01 3 123688915 123688915 C A ROPN1 Missense_Mutation p.R182S 0.09 tolerated(0.94) possibly_damaging(0.61) TCGA-K4-A3WS-01 3 124209673 124209673 G A KALRN Missense_Mutation p.S1508N 0.32 deleterious(0) probably_damaging(0.961) TCGA-K4-A3WS-01 3 12475698 12475698 G A PPARG 3'UTR 0.12 TCGA-K4-A3WS-01 3 125250824 125250824 C T OSBPL11 Missense_Mutation p.E687K 0.18 tolerated(0.82) benign(0.076) TCGA-K4-A3WS-01 3 134197381 134197381 G A ANAPC13 3'UTR 0.26 TCGA-K4-A3WS-01 3 137843555 137843555 T A A4GNT Missense_Mutation p.N192Y 0.08 deleterious(0) probably_damaging(0.971) TCGA-K4-A3WS-01 3 158428666 158428666 G C RARRES1 Missense_Mutation p.F132L 0.28 deleterious(0) probably_damaging(0.977) TCGA-K4-A3WS-01 3 169710730 169710730 G A SEC62 Missense_Mutation p.G360E 0.09 deleterious(0) unknown(0) TCGA-K4-A3WS-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.22 deleterious(0.04) probably_damaging(0.96) TCGA-K4-A3WS-01 3 183029466 183029466 T A MCF2L2 Missense_Mutation p.N283I 0.31 deleterious(0) benign(0.122) TCGA-K4-A3WS-01 3 193007837 193007837 G C ATP13A5 Missense_Mutation p.H954D 0.08 tolerated(0.59) benign(0.005) TCGA-K4-A3WS-01 3 39225815 39225815 C T XIRP1 Missense_Mutation p.A1708T 0.15 tolerated(0.13) benign(0.005) TCGA-K4-A3WS-01 3 44763523 44763523 G A ZNF502 Missense_Mutation p.R405K 0.33 tolerated(1) benign(0.14) TCGA-K4-A3WS-01 3 45812892 45812892 G C SLC6A20 Nonsense_Mutation p.S251* 0.26 TCGA-K4-A3WS-01 3 47604194 47604194 C A CSPG5 Nonsense_Mutation p.E533* 0.18 TCGA-K4-A3WS-01 3 50197151 50197151 C T SEMA3F Silent p.V32V 0.18 TCGA-K4-A3WS-01 3 50311844 50311844 C A LSMEM2 5'Flank 0.21 TCGA-K4-A3WS-01 3 52400859 52400859 G T DNAH1 Silent p.T1907T 0.14 TCGA-K4-A3WS-01 3 93699277 93699277 C G ARL13B Missense_Mutation p.L4V 0.16 tolerated(0.06) benign(0.063) TCGA-K4-A3WS-01 3 9845628 9845628 G C ARPC4 Missense_Mutation p.K163N 0.10 deleterious(0) probably_damaging(0.912) TCGA-K4-A3WS-01 4 158283999 158283999 A G GRIA2 Missense_Mutation p.I819V 0.12 deleterious(0) probably_damaging(0.997) TCGA-K4-A3WS-01 4 177713384 177713384 C G VEGFC Missense_Mutation p.A28P 0.18 tolerated_low_confidence(0.13) possibly_damaging(0.505) TCGA-K4-A3WS-01 4 187524560 187524560 G T FAT1 Nonsense_Mutation p.S3707* 0.26 TCGA-K4-A3WS-01 4 55961065 55961065 G C KDR Missense_Mutation p.L959V 0.16 tolerated(0.61) benign(0.013) TCGA-K4-A3WS-01 4 70920139 70920139 G A HTN1 Missense_Mutation p.R25K 0.29 tolerated_low_confidence(0.91) possibly_damaging(0.567) TCGA-K4-A3WS-01 4 95200071 95200071 G C SMARCAD1 Intron 0.23 TCGA-K4-A3WS-01 5 115350145 115350145 G A AQPEP Missense_Mutation p.A791T 0.08 deleterious(0.01) possibly_damaging(0.825) TCGA-K4-A3WS-01 5 132098183 132098183 A T SEPT8 Missense_Mutation p.V230D 0.14 tolerated(0.4) benign(0.41) TCGA-K4-A3WS-01 5 134191113 134191113 G T C5orf24 Missense_Mutation p.G175W 0.21 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-K4-A3WS-01 5 137275861 137275861 T C FAM13B 3'UTR 0.15 TCGA-K4-A3WS-01 5 140731600 140731600 C T PCDHGB1 Silent p.D591D 0.16 TCGA-K4-A3WS-01 5 14399063 14399063 T G TRIO Missense_Mutation p.L1500V 0.19 probably_damaging(0.948) TCGA-K4-A3WS-01 5 148695811 148695811 G C AFAP1L1 Missense_Mutation p.K404N 0.08 deleterious(0) probably_damaging(0.991) TCGA-K4-A3WS-01 5 149433917 149433917 G C CSF1R Missense_Mutation p.Q911E 0.36 tolerated(0.2) benign(0.089) TCGA-K4-A3WS-01 5 150901299 150901299 C A FAT2 Missense_Mutation p.V3619L 0.15 possibly_damaging(0.9) TCGA-K4-A3WS-01 5 180661586 180661586 G A TRIM41 Silent p.T568T 0.08 TCGA-K4-A3WS-01 5 55076907 55076907 C A DDX4 Missense_Mutation p.D170E 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-K4-A3WS-01 5 64314141 64314141 G C CWC27 Missense_Mutation p.R471T 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-K4-A3WS-01 5 68805240 68805240 G A OCLN Missense_Mutation p.G108E 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-K4-A3WS-01 5 78359611 78359611 C G DMGDH Splice_Site p.X34_splice 0.19 TCGA-K4-A3WS-01 5 82835422 82835422 T A VCAN Silent p.T2200T 0.15 TCGA-K4-A3WS-01 5 9629419 9629419 C A TAS2R1 Missense_Mutation p.M242I 0.16 tolerated(0.27) benign(0.005) TCGA-K4-A3WS-01 6 100838763 100838763 A T SIM1 Missense_Mutation p.L592Q 0.11 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-K4-A3WS-01 6 121562637 121562637 G C TBC1D32 Missense_Mutation p.A740G 0.16 deleterious(0) possibly_damaging(0.46) TCGA-K4-A3WS-01 6 124979332 124979332 G C NKAIN2 Missense_Mutation p.E92Q 0.15 deleterious(0) benign(0.224) TCGA-K4-A3WS-01 6 146755219 146755219 G C GRM1 Missense_Mutation p.E958Q 0.24 tolerated(0.35) benign(0.017) TCGA-K4-A3WS-01 6 155500249 155500249 C T TIAM2 Missense_Mutation p.P867L 0.22 tolerated(0.08) possibly_damaging(0.609) TCGA-K4-A3WS-01 6 160205738 160205738 G A TCP1 Silent p.L210L 0.07 TCGA-K4-A3WS-01 6 22294754 22294754 G C PRL Missense_Mutation p.P30A 0.12 deleterious(0.01) possibly_damaging(0.871) TCGA-K4-A3WS-01 6 29364423 29364423 G C OR12D2 5'UTR 0.09 TCGA-K4-A3WS-01 6 32261017 32261017 G A C6orf10 Missense_Mutation p.S478L 0.09 deleterious(0.01) benign(0.004) TCGA-K4-A3WS-01 6 33288742 33288742 G A DAXX Silent p.R270R 0.41 TCGA-K4-A3WS-01 6 33424400 33424400 C T ZBTB9 3'UTR 0.26 TCGA-K4-A3WS-01 6 36168216 36168216 G A BRPF3 Silent p.R39R 0.06 TCGA-K4-A3WS-01 6 42974675 42974675 C T PPP2R5D Silent p.L117L 0.14 TCGA-K4-A3WS-01 6 44224183 44224183 G A SLC35B2 Missense_Mutation p.P86S 0.12 tolerated(0.88) benign(0.002) TCGA-K4-A3WS-01 6 46626634 46626637 ATAC - SLC25A27 Intron 0.11 TCGA-K4-A3WS-01 6 49666126 49666126 G A CRISP2 Silent p.V122V 0.13 TCGA-K4-A3WS-01 6 80746227 80746227 C G TTK Missense_Mutation p.L654V 0.08 tolerated(0.47) benign(0.048) TCGA-K4-A3WS-01 6 83834892 83834892 G C DOPEY1 Missense_Mutation p.R488T 0.10 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-K4-A3WS-01 6 83861316 83861316 C A DOPEY1 Missense_Mutation p.L1948M 0.14 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WS-01 7 100675897 100675897 C G MUC17 Silent p.V400V 0.30 TCGA-K4-A3WS-01 7 116371801 116371801 T G MET Missense_Mutation p.V427G 0.11 deleterious(0) possibly_damaging(0.819) TCGA-K4-A3WS-01 7 134635196 134635196 G A CALD1 Missense_Mutation p.M622I 0.08 tolerated(0.09) benign(0.151) TCGA-K4-A3WS-01 7 138529124 138529124 C G KIAA1549 Missense_Mutation p.R1797T 0.15 deleterious(0) probably_damaging(0.997) TCGA-K4-A3WS-01 7 156743110 156743110 A G NOM1 Missense_Mutation p.K227E 0.15 tolerated(0.66) benign(0.002) TCGA-K4-A3WS-01 7 24663374 24663374 G C MPP6 Missense_Mutation p.E30Q 0.15 deleterious(0.05) benign(0.363) TCGA-K4-A3WS-01 7 37947189 37947189 A T SFRP4 Missense_Mutation p.S311R 0.10 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-K4-A3WS-01 7 48312668 48312668 C A ABCA13 Silent p.V1135V 0.29 TCGA-K4-A3WS-01 7 76126675 76126675 C T DTX2 Missense_Mutation p.S344L 0.14 deleterious(0.03) benign(0.002) TCGA-K4-A3WS-01 7 99226951 99226951 G C ZSCAN25 Missense_Mutation p.G315R 0.12 tolerated(0.18) benign(0.001) TCGA-K4-A3WS-01 7 99699682 99699682 C G AP4M1 Intron 0.44 TCGA-K4-A3WS-01 8 117866648 117866648 C G RAD21 Missense_Mutation p.D333H 0.33 deleterious(0.03) possibly_damaging(0.854) TCGA-K4-A3WS-01 8 120790295 120790295 T C TAF2 Silent p.L776L 0.20 TCGA-K4-A3WS-01 8 125577982 125577982 C T MTSS1 Missense_Mutation p.G249S 0.09 deleterious(0.05) possibly_damaging(0.754) TCGA-K4-A3WS-01 8 128750529 128750529 C A MYC Missense_Mutation p.F22L 0.32 tolerated(1) benign(0.002) TCGA-K4-A3WS-01 8 133948082 133948082 G A TG Missense_Mutation p.D1672N 0.18 tolerated(0.09) benign(0.146) TCGA-K4-A3WS-01 8 134475669 134475669 C T ST3GAL1 Silent p.V239V 0.14 TCGA-K4-A3WS-01 8 145624759 145624759 C T CPSF1 Silent p.A433A 0.24 TCGA-K4-A3WS-01 8 18393456 18393456 C A PSD3 Nonsense_Mutation p.E981* 0.20 TCGA-K4-A3WS-01 8 36722033 36722033 C A KCNU1 Missense_Mutation p.T668N 0.31 tolerated(0.48) benign(0.004) TCGA-K4-A3WS-01 8 36722034 36722034 C G KCNU1 Silent p.T668T 0.30 TCGA-K4-A3WS-01 8 41572563 41572563 G T ANK1 Silent p.A577A 0.06 TCGA-K4-A3WS-01 8 61767054 61767054 G A CHD7 Missense_Mutation p.R2303K 0.12 possibly_damaging(0.867) TCGA-K4-A3WS-01 8 66963856 66963856 G C DNAJC5B Missense_Mutation p.G25A 0.15 deleterious(0.04) benign(0.232) TCGA-K4-A3WS-01 9 100245529 100245529 G A TDRD7 Silent p.K937K 0.07 TCGA-K4-A3WS-01 9 104189883 104189883 C A ALDOB Missense_Mutation p.D141Y 0.07 deleterious(0.01) possibly_damaging(0.795) TCGA-K4-A3WS-01 9 118950282 118950282 A G PAPPA Missense_Mutation p.E422G 0.35 tolerated(0.12) possibly_damaging(0.728) TCGA-K4-A3WS-01 9 125898437 125898437 G C STRBP Missense_Mutation p.F552L 0.12 deleterious(0) probably_damaging(0.996) TCGA-K4-A3WS-01 9 130507349 130507349 G T SH2D3C Missense_Mutation p.P432T 0.33 tolerated(0.21) benign(0.184) TCGA-K4-A3WS-01 9 131475651 131475651 C T PKN3 Silent p.V359V 0.20 TCGA-K4-A3WS-01 9 27197331 27197331 G C TEK Missense_Mutation p.G548A 0.10 tolerated(0.18) benign(0.052) TCGA-K4-A3WS-01 9 34662358 34662358 G C CCL27 Silent p.L42L 0.26 TCGA-K4-A3WS-01 9 35396570 35396570 C T UNC13B Silent p.V1053V 0.30 TCGA-K4-A3WS-01 9 4679834 4679834 G C CDC37L1 Missense_Mutation p.E23Q 0.15 deleterious_low_confidence(0.02) benign(0.419) TCGA-K4-A3WS-01 9 74856157 74856157 G A GDA Missense_Mutation p.E360K 0.10 tolerated(0.27) benign(0.003) TCGA-K4-A3WS-01 9 79974283 79974283 G C VPS13A Missense_Mutation p.M2690I 0.15 tolerated(0.09) benign(0.005) TCGA-K4-A3WS-01 9 88967883 88967883 C T ZCCHC6 Missense_Mutation p.A78T 0.09 tolerated_low_confidence(0.11) possibly_damaging(0.507) TCGA-K4-A3WS-01 9 95147799 95147799 G C OGN 3'UTR 0.34 TCGA-K4-A3WS-01 X 117892057 117892057 C T IL13RA1 Silent p.I176I 0.28 TCGA-K4-A3WS-01 X 117900535 117900535 G A IL13RA1 Missense_Mutation p.V291M 0.43 tolerated(0.46) benign(0) TCGA-K4-A3WS-01 X 125298848 125298848 G C DCAF12L2 Missense_Mutation p.R354G 0.18 deleterious(0.01) possibly_damaging(0.666) TCGA-K4-A3WS-01 X 128614761 128614761 G A SMARCA1 Nonsense_Mutation p.Q787* 0.54 TCGA-K4-A3WS-01 X 153539540 153539540 C T TKTL1 Silent p.H207H 0.22 TCGA-K4-A3WS-01 X 153539541 153539541 A T TKTL1 Nonsense_Mutation p.K208* 0.22 TCGA-K4-A3WS-01 X 69255458 69255458 A G EDA Nonstop_Mutation p.*392Wext*29 0.46 TCGA-K4-A3WS-01 X 70522288 70522288 G A ITGB1BP2 Missense_Mutation p.E67K 0.33 tolerated(0.08) benign(0.021) TCGA-K4-A3WS-01 X 94318152 94318152 G T MIR548M RNA 0.13 TCGA-K4-A3WU-01 10 125798151 125798151 G T CHST15 Missense_Mutation p.A357D 0.16 deleterious(0) possibly_damaging(0.542) TCGA-K4-A3WU-01 10 13712435 13712435 C T FRMD4A Missense_Mutation p.D449N 0.14 deleterious(0.02) possibly_damaging(0.501) TCGA-K4-A3WU-01 10 13712504 13712504 C T FRMD4A Missense_Mutation p.E426K 0.12 deleterious(0) possibly_damaging(0.582) TCGA-K4-A3WU-01 10 31133898 31133898 C T ZNF438 Missense_Mutation p.E827K 0.09 tolerated(0.09) benign(0.077) TCGA-K4-A3WU-01 10 34420399 34420399 G C PARD3 Missense_Mutation p.Q1181E 0.20 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-K4-A3WU-01 10 38406754 38406754 C G ZNF37A Missense_Mutation p.S225R 0.10 tolerated(0.35) benign(0.161) TCGA-K4-A3WU-01 10 55755405 55755405 T C PCDH15 Intron 0.10 TCGA-K4-A3WU-01 10 7768927 7768927 G A ITIH2 Missense_Mutation p.M333I 0.06 deleterious(0.01) possibly_damaging(0.734) TCGA-K4-A3WU-01 10 82269071 82269071 C A TSPAN14 Silent p.I98I 0.14 TCGA-K4-A3WU-01 11 101946796 101946796 A G C11orf70 Intron 0.14 TCGA-K4-A3WU-01 11 108218071 108218071 G C ATM Missense_Mutation p.E2884Q 0.30 deleterious(0) probably_damaging(0.982) TCGA-K4-A3WU-01 11 116633771 116633771 C A BUD13 Missense_Mutation p.R178S 0.12 deleterious(0.01) benign(0.191) TCGA-K4-A3WU-01 11 116633772 116633772 C T BUD13 Missense_Mutation p.R178K 0.13 deleterious(0.03) benign(0.424) TCGA-K4-A3WU-01 11 118754653 118754653 G T CXCR5 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-K4-A3WU-01 11 125850958 125850958 G A CDON Missense_Mutation p.H1088Y 0.27 deleterious(0.02) probably_damaging(0.939) TCGA-K4-A3WU-01 11 125889616 125889616 C G CDON Missense_Mutation p.E132Q 0.16 tolerated(0.17) benign(0.226) TCGA-K4-A3WU-01 11 130011399 130011399 G T APLP2 Missense_Mutation p.D656Y 0.27 deleterious(0) probably_damaging(0.926) TCGA-K4-A3WU-01 11 17743108 17743108 C T MYOD1 3'UTR 0.12 TCGA-K4-A3WU-01 11 46407836 46407836 A G CHRM4 Missense_Mutation p.V91A 0.14 tolerated(0.18) possibly_damaging(0.887) TCGA-K4-A3WU-01 11 62910866 62910866 G C SLC22A24 Missense_Mutation p.S129C 0.12 deleterious(0) probably_damaging(1) TCGA-K4-A3WU-01 11 67223087 67223087 G A CABP4 Missense_Mutation p.E65K 0.11 tolerated(0.1) benign(0.008) TCGA-K4-A3WU-01 11 8724142 8724142 G C ST5 Silent p.V899V 0.06 TCGA-K4-A3WU-01 11 92703069 92703069 C T MTNR1B Silent p.L60L 0.26 TCGA-K4-A3WU-01 11 95724768 95724768 C G MAML2 Missense_Mutation p.L753F 0.15 unknown(0) TCGA-K4-A3WU-01 12 10205299 10205299 G C CLEC9A Missense_Mutation p.E5Q 0.15 deleterious(0.01) possibly_damaging(0.773) TCGA-K4-A3WU-01 12 111348888 111348888 T C MYL2 Missense_Mutation p.K165R 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-K4-A3WU-01 12 111348892 111348892 C G MYL2 Missense_Mutation p.E164Q 0.11 tolerated(0.06) possibly_damaging(0.864) TCGA-K4-A3WU-01 12 11183288 11183288 G C TAS2R31 Missense_Mutation p.S216C 0.07 tolerated(0.16) benign(0.098) TCGA-K4-A3WU-01 12 123214852 123214853 - C HCAR1 Frame_Shift_Ins p.D12Gfs*50 0.13 TCGA-K4-A3WU-01 12 130846097 130846097 C T PIWIL1 Missense_Mutation p.R641W 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-K4-A3WU-01 12 27850240 27850240 G A REP15 3'UTR 0.09 TCGA-K4-A3WU-01 12 31446788 31446788 C G FAM60A Missense_Mutation p.R102S 0.14 tolerated(0.37) benign(0.135) TCGA-K4-A3WU-01 12 48360997 48360997 C T TMEM106C Silent p.F203F 0.17 TCGA-K4-A3WU-01 12 56745131 56745131 C T STAT2 Missense_Mutation p.G296R 0.08 tolerated(0.26) possibly_damaging(0.665) TCGA-K4-A3WU-01 12 57409533 57409533 G C TAC3 Missense_Mutation p.Q17E 0.18 tolerated(0.2) probably_damaging(0.959) TCGA-K4-A3WU-01 12 57588794 57588794 G C LRP1 Missense_Mutation p.E2740Q 0.08 benign(0.39) TCGA-K4-A3WU-01 12 64485155 64485155 C G SRGAP1 Silent p.V512V 0.11 TCGA-K4-A3WU-01 12 66308892 66308892 T C HMGA2 Intron 0.04 TCGA-K4-A3WU-01 12 71016176 71016176 A G PTPRB Silent p.T234T 0.04 TCGA-K4-A3WU-01 12 7295617 7295617 A T CLSTN3 Missense_Mutation p.M565L 0.13 tolerated(0.16) benign(0.008) TCGA-K4-A3WU-01 12 8086418 8086418 A T SLC2A3 Missense_Mutation p.N32K 0.07 deleterious(0) probably_damaging(0.933) TCGA-K4-A3WU-01 12 85531742 85531742 G C LRRIQ1 Missense_Mutation p.D1442H 0.17 tolerated(0.11) benign(0.174) TCGA-K4-A3WU-01 12 86272159 86272159 C G NTS Missense_Mutation p.L58V 0.07 deleterious(0) probably_damaging(0.998) TCGA-K4-A3WU-01 13 109318494 109318494 G C MYO16 Missense_Mutation p.E75Q 0.12 deleterious(0.01) probably_damaging(0.909) TCGA-K4-A3WU-01 13 77672741 77672741 G C MYCBP2 Missense_Mutation p.L2812V 0.06 possibly_damaging(0.48) TCGA-K4-A3WU-01 14 32560146 32560146 C T ARHGAP5 Missense_Mutation p.H91Y 0.07 deleterious(0.01) possibly_damaging(0.881) TCGA-K4-A3WU-01 14 37145475 37145475 C T PAX9 Nonsense_Mutation p.Q282* 0.10 TCGA-K4-A3WU-01 14 53513571 53513571 G A DDHD1 Missense_Mutation p.S873F 0.14 deleterious(0) probably_damaging(0.998) TCGA-K4-A3WU-01 14 59113460 59113460 G A DACT1 Missense_Mutation p.A707T 0.09 tolerated(0.18) benign(0.152) TCGA-K4-A3WU-01 14 65246625 65246625 G C SPTB Missense_Mutation p.R1431G 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-K4-A3WU-01 14 69257141 69257142 - C ZFP36L1 Frame_Shift_Ins p.T43Hfs*32 0.17 TCGA-K4-A3WU-01 14 78183973 78183973 A G SNW1 3'UTR 0.20 TCGA-K4-A3WU-01 14 88934487 88934487 G C PTPN21 Silent p.L1173L 0.14 TCGA-K4-A3WU-01 15 66639623 66639623 G C TIPIN Intron 0.12 TCGA-K4-A3WU-01 15 72172115 72172115 C G MYO9A Missense_Mutation p.A1896P 0.12 deleterious(0) benign(0.144) TCGA-K4-A3WU-01 15 78922181 78922181 C G CHRNB4 Missense_Mutation p.E156Q 0.11 deleterious(0.01) benign(0.284) TCGA-K4-A3WU-01 16 20808197 20808197 G C ERI2 3'UTR 0.19 TCGA-K4-A3WU-01 16 2546657 2546657 G - RP11-20I23.1 Frame_Shift_Del p.D170Tfs*12 0.09 TCGA-K4-A3WU-01 16 30021406 30021406 G A DOC2A Silent p.G46G 0.14 TCGA-K4-A3WU-01 16 50339459 50339459 C T ADCY7 Silent p.D547D 0.09 TCGA-K4-A3WU-01 16 53341818 53341818 G A CHD9 Splice_Site p.X2335_splice 0.10 TCGA-K4-A3WU-01 16 66860670 66860670 G A NAE1 Missense_Mutation p.H23Y 0.10 deleterious(0) possibly_damaging(0.859) TCGA-K4-A3WU-01 16 67213339 67213339 C A KIAA0895L Nonsense_Mutation p.E281* 0.11 TCGA-K4-A3WU-01 16 67213361 67213361 C G KIAA0895L Missense_Mutation p.W273C 0.11 deleterious(0) probably_damaging(0.98) TCGA-K4-A3WU-01 16 67221161 67221161 G T EXOC3L1 Missense_Mutation p.A336D 0.12 tolerated(0.08) possibly_damaging(0.616) TCGA-K4-A3WU-01 16 68009821 68009821 G A DPEP3 Silent p.L463L 0.11 TCGA-K4-A3WU-01 16 75238077 75238077 C G CTRB2 Missense_Mutation p.K258N 0.07 tolerated(0.09) benign(0.001) TCGA-K4-A3WU-01 16 75238187 75238187 C T CTRB2 Missense_Mutation p.D222N 0.06 tolerated(0.59) benign(0.026) TCGA-K4-A3WU-01 16 816647 816647 C G MSLN Missense_Mutation p.P412A 0.12 tolerated(0.32) benign(0.001) TCGA-K4-A3WU-01 17 37186312 37186312 C G CTD-2206N4.2 5'Flank 0.21 TCGA-K4-A3WU-01 17 42171034 42171034 T A HDAC5 Missense_Mutation p.Q89L 0.08 deleterious(0) probably_damaging(0.922) TCGA-K4-A3WU-01 17 48431297 48431297 G C XYLT2 Missense_Mutation p.E148Q 0.14 tolerated(0.19) benign(0.421) TCGA-K4-A3WU-01 17 4849269 4849269 C G PFN1 Missense_Mutation p.E117Q 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-K4-A3WU-01 17 4876139 4876139 C G CAMTA2 Missense_Mutation p.E833Q 0.23 deleterious(0) benign(0.021) TCGA-K4-A3WU-01 17 50235162 50235162 C G CA10 5'UTR 0.04 TCGA-K4-A3WU-01 17 50235260 50235260 C T CA10 5'UTR 0.12 TCGA-K4-A3WU-01 17 50235305 50235305 C G CA10 5'UTR 0.15 TCGA-K4-A3WU-01 17 5265004 5265004 C G RABEP1 Intron 0.09 TCGA-K4-A3WU-01 17 59668370 59668370 C T NACA2 Missense_Mutation p.E58K 0.18 tolerated(0.12) benign(0.255) TCGA-K4-A3WU-01 17 649462 649462 G C GEMIN4 Silent p.L607L 0.11 TCGA-K4-A3WU-01 17 6683806 6683806 C T FBXO39 Missense_Mutation p.H207Y 0.16 tolerated(0.71) benign(0.006) TCGA-K4-A3WU-01 17 6928501 6928501 C T BCL6B Missense_Mutation p.R291W 0.06 deleterious(0.04) benign(0.308) TCGA-K4-A3WU-01 17 73774687 73774687 C G H3F3B Missense_Mutation p.E134Q 0.19 deleterious_low_confidence(0.01) benign(0.021) TCGA-K4-A3WU-01 17 73824054 73824054 C T UNC13D Missense_Mutation p.A1089T 0.11 deleterious_low_confidence(0.01) benign(0.003) TCGA-K4-A3WU-01 17 76120607 76120607 C T TMC6 Missense_Mutation p.A297T 0.13 tolerated(0.24) benign(0.436) TCGA-K4-A3WU-01 17 79426591 79426591 C G RP11-1055B8.7 Missense_Mutation p.Q1956E 0.13 probably_damaging(0.977) TCGA-K4-A3WU-01 17 79503966 79503966 G C FSCN2 Missense_Mutation p.E471Q 0.29 tolerated(0.6) probably_damaging(0.972) TCGA-K4-A3WU-01 17 8925911 8925911 C T NTN1 Missense_Mutation p.P74L 0.23 deleterious(0.03) possibly_damaging(0.542) TCGA-K4-A3WU-01 17 9729386 9729386 G C GLP2R Missense_Mutation p.K2N 0.18 deleterious_low_confidence(0) unknown(0) TCGA-K4-A3WU-01 18 46476250 46476250 G C SMAD7 Missense_Mutation p.S182C 0.08 deleterious(0) probably_damaging(0.947) TCGA-K4-A3WU-01 18 77659423 77659423 C T KCNG2 Silent p.F336F 0.31 TCGA-K4-A3WU-01 19 10475384 10475384 G A TYK2 Missense_Mutation p.R425C 0.22 deleterious(0) probably_damaging(0.998) TCGA-K4-A3WU-01 19 18120728 18120728 C T ARRDC2 Silent p.L243L 0.08 TCGA-K4-A3WU-01 19 2762518 2762518 C T SGTA Missense_Mutation p.E208K 0.10 deleterious(0) possibly_damaging(0.68) TCGA-K4-A3WU-01 19 36278974 36278974 C T ARHGAP33 Silent p.Y1008Y 0.15 TCGA-K4-A3WU-01 19 38794893 38794893 C G C19orf33 5'UTR 0.09 TCGA-K4-A3WU-01 19 42910494 42910494 C T LIPE Silent p.G728G 0.12 TCGA-K4-A3WU-01 19 4538457 4538457 G T LRG1 Missense_Mutation p.P180H 0.08 deleterious(0) probably_damaging(0.989) TCGA-K4-A3WU-01 19 45656023 45656023 G A NKPD1 Missense_Mutation p.R558C 0.24 deleterious(0) benign(0.01) TCGA-K4-A3WU-01 19 47773835 47773835 G A CCDC9 Silent p.P325P 0.08 TCGA-K4-A3WU-01 19 51628543 51628543 G A SIGLEC9 Silent p.L104L 0.14 TCGA-K4-A3WU-01 19 54245814 54245814 G A MIR520H RNA 0.14 TCGA-K4-A3WU-01 19 54598563 54598563 C G OSCAR 3'UTR 0.18 TCGA-K4-A3WU-01 19 56113573 56113573 G A ZNF524 Missense_Mutation p.R32Q 0.15 tolerated_low_confidence(0.12) unknown(0) TCGA-K4-A3WU-01 19 57335705 57335705 G T PEG3 Silent p.R107R 0.08 TCGA-K4-A3WU-01 19 58198725 58198725 G A ZNF551 Missense_Mutation p.R361K 0.07 tolerated(0.19) probably_damaging(0.992) TCGA-K4-A3WU-01 19 8152753 8152753 C G FBN3 Missense_Mutation p.C2192S 0.07 deleterious(0.01) probably_damaging(0.976) TCGA-K4-A3WU-01 19 8591788 8591788 C G MYO1F Missense_Mutation p.E836Q 0.07 tolerated(0.21) benign(0.209) TCGA-K4-A3WU-01 19 9868414 9868414 C T ZNF846 Missense_Mutation p.E447K 0.19 deleterious(0.04) probably_damaging(0.986) TCGA-K4-A3WU-01 1 110255863 110255863 C G GSTM5 Intron 0.18 TCGA-K4-A3WU-01 1 110257749 110257749 C T GSTM5 Intron 0.10 TCGA-K4-A3WU-01 1 12378341 12378341 C T VPS13D Missense_Mutation p.S2454F 0.10 probably_damaging(0.927) TCGA-K4-A3WU-01 1 12979810 12979810 C T PRAMEF7 Silent p.F334F 0.05 TCGA-K4-A3WU-01 1 145440476 145440476 G C TXNIP Missense_Mutation p.R261T 0.12 tolerated(0.99) benign(0.077) TCGA-K4-A3WU-01 1 145440481 145440481 T C TXNIP Missense_Mutation p.S263P 0.12 deleterious(0) probably_damaging(0.99) TCGA-K4-A3WU-01 1 145440508 145440509 - T TXNIP Frame_Shift_Ins p.E273* 0.09 TCGA-K4-A3WU-01 1 152080154 152080154 C T TCHH Missense_Mutation p.A1847T 0.08 possibly_damaging(0.483) TCGA-K4-A3WU-01 1 152080660 152080660 T G TCHH Missense_Mutation p.E1678A 0.09 unknown(0) TCGA-K4-A3WU-01 1 152084447 152084447 C T TCHH Missense_Mutation p.E416K 0.11 unknown(0) TCGA-K4-A3WU-01 1 152325730 152325730 G C FLG2 Nonsense_Mutation p.S1511* 0.19 TCGA-K4-A3WU-01 1 15890478 15890478 G A DNAJC16 Missense_Mutation p.E465K 0.10 tolerated(0.69) benign(0.001) TCGA-K4-A3WU-01 1 15894468 15894468 G C DNAJC16 Missense_Mutation p.K715N 0.10 tolerated(0.32) benign(0.003) TCGA-K4-A3WU-01 1 15894475 15894475 G A DNAJC16 Missense_Mutation p.E718K 0.10 tolerated(0.24) benign(0.386) TCGA-K4-A3WU-01 1 159409753 159409753 C A OR10J1 Missense_Mutation p.P69T 0.05 deleterious(0) probably_damaging(0.996) TCGA-K4-A3WU-01 1 168250420 168250420 G C TBX19 Missense_Mutation p.R31T 0.05 tolerated(0.06) probably_damaging(0.997) TCGA-K4-A3WU-01 1 179852011 179852011 G A TOR1AIP1 Missense_Mutation p.R125Q 0.09 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-K4-A3WU-01 1 203681223 203681223 G C ATP2B4 Missense_Mutation p.E723Q 0.10 deleterious(0.01) benign(0.108) TCGA-K4-A3WU-01 1 213415603 213415603 C T RPS6KC1 Silent p.R928R 0.08 TCGA-K4-A3WU-01 1 235826288 235826288 C T LYST Silent p.L3786L 0.07 TCGA-K4-A3WU-01 1 235972124 235972124 G A LYST Missense_Mutation p.S665L 0.07 tolerated(0.28) benign(0.179) TCGA-K4-A3WU-01 1 248458397 248458397 G T OR2T12 Missense_Mutation p.L162M 0.04 tolerated(0.64) possibly_damaging(0.856) TCGA-K4-A3WU-01 1 31439030 31439030 G A PUM1 Nonsense_Mutation p.Q629* 0.22 TCGA-K4-A3WU-01 1 36640550 36640550 C T MAP7D1 Missense_Mutation p.S264F 0.10 probably_damaging(0.997) TCGA-K4-A3WU-01 1 36766675 36766675 G A THRAP3 Missense_Mutation p.R831Q 0.09 tolerated(0.14) probably_damaging(0.947) TCGA-K4-A3WU-01 1 43868912 43868912 G A SZT2 Missense_Mutation p.R31H 0.09 deleterious(0) probably_damaging(0.989) TCGA-K4-A3WU-01 1 43898837 43898837 G A SZT2 Missense_Mutation p.R1870H 0.10 tolerated(0.31) benign(0.012) TCGA-K4-A3WU-01 1 44584546 44584546 C G KLF17 5'UTR 0.19 TCGA-K4-A3WU-01 1 46650908 46650908 T C TSPAN1 Silent p.N202N 0.06 TCGA-K4-A3WU-01 1 47395912 47395912 C G CYP4A11 Missense_Mutation p.E479Q 0.06 tolerated(0.09) possibly_damaging(0.859) TCGA-K4-A3WU-01 1 47398403 47398403 C A CYP4A11 Intron 0.09 TCGA-K4-A3WU-01 1 50574828 50574828 G A ELAVL4 Intron 0.10 TCGA-K4-A3WU-01 1 57347200 57347200 G C C8A Missense_Mutation p.G183R 0.06 deleterious(0) probably_damaging(0.988) TCGA-K4-A3WU-01 1 78098534 78098536 AGT - ZZZ3 In_Frame_Del p.I168_L169delinsM 0.08 TCGA-K4-A3WU-01 1 7993281 7993281 G A TNFRSF9 Missense_Mutation p.T207M 0.11 tolerated(0.37) benign(0.005) TCGA-K4-A3WU-01 20 16359644 16359644 C G KIF16B Missense_Mutation p.Q1001H 0.10 tolerated_low_confidence(0.08) benign(0.149) TCGA-K4-A3WU-01 20 25456923 25456923 C T NINL Missense_Mutation p.E1002K 0.11 tolerated(0.1) benign(0.032) TCGA-K4-A3WU-01 20 3270794 3270794 G C C20orf194 Missense_Mutation p.L770V 0.12 tolerated(0.13) possibly_damaging(0.641) TCGA-K4-A3WU-01 20 44416554 44416554 C G WFDC3 Missense_Mutation p.E93D 0.08 tolerated(0.22) possibly_damaging(0.492) TCGA-K4-A3WU-01 20 44417657 44417657 C G WFDC3 Missense_Mutation p.E42Q 0.06 deleterious(0.02) possibly_damaging(0.659) TCGA-K4-A3WU-01 20 56098314 56098314 C T CTCFL Silent p.K188K 0.12 TCGA-K4-A3WU-01 21 11058166 11058166 T A BAGE2 RNA 0.10 TCGA-K4-A3WU-01 21 34399139 34399139 G A OLIG2 5'UTR 0.17 TCGA-K4-A3WU-01 21 46066950 46066950 T C KRTAP10-11 Missense_Mutation p.V192A 0.07 tolerated(0.12) benign(0.418) TCGA-K4-A3WU-01 22 50720031 50720031 C G PLXNB2 Missense_Mutation p.Q1162H 0.18 tolerated(0.08) benign(0.025) TCGA-K4-A3WU-01 2 100903525 100903525 C T LONRF2 Missense_Mutation p.V641M 0.10 deleterious(0.02) probably_damaging(0.977) TCGA-K4-A3WU-01 2 111408235 111408235 A G BUB1 Silent p.A697A 0.09 TCGA-K4-A3WU-01 2 125671724 125671724 G C CNTNAP5 Silent p.R1260R 0.05 TCGA-K4-A3WU-01 2 12863643 12863643 C T TRIB2 Silent p.L176L 0.12 TCGA-K4-A3WU-01 2 168101899 168101899 G C XIRP2 Missense_Mutation p.E1333Q 0.14 probably_damaging(0.999) TCGA-K4-A3WU-01 2 170055326 170055326 C G LRP2 Missense_Mutation p.D2850H 0.07 probably_damaging(0.998) TCGA-K4-A3WU-01 2 201436243 201436243 G A SGOL2 Missense_Mutation p.E392K 0.10 tolerated(0.11) benign(0.217) TCGA-K4-A3WU-01 2 21229266 21229266 T A APOB Missense_Mutation p.I3492F 0.18 probably_damaging(0.946) TCGA-K4-A3WU-01 2 225371615 225371615 G T CUL3 Missense_Mutation p.S330Y 0.15 deleterious(0.02) possibly_damaging(0.56) TCGA-K4-A3WU-01 2 242169088 242169088 G A HDLBP Silent p.S1245S 0.12 TCGA-K4-A3WU-01 2 27665507 27665507 C T KRTCAP3 Silent p.H30H 0.18 TCGA-K4-A3WU-01 2 29268244 29268244 G A FAM179A Missense_Mutation p.R897H 0.16 tolerated(0.05) benign(0.017) TCGA-K4-A3WU-01 2 32476278 32476278 G C NLRC4 Missense_Mutation p.Q219E 0.17 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WU-01 2 54753555 54753555 G C SPTBN1 5'UTR 0.48 TCGA-K4-A3WU-01 2 55566659 55566659 C G CCDC88A Missense_Mutation p.E487Q 0.07 tolerated(0.25) benign(0.015) TCGA-K4-A3WU-01 2 75116424 75116424 G C HK2 Missense_Mutation p.E810Q 0.15 tolerated(0.35) benign(0.007) TCGA-K4-A3WU-01 2 98804557 98804557 G C VWA3B Missense_Mutation p.E477D 0.17 tolerated(0.1) benign(0.062) TCGA-K4-A3WU-01 3 10089628 10089628 C A FANCD2 Missense_Mutation p.L436M 0.09 deleterious(0) probably_damaging(0.97) TCGA-K4-A3WU-01 3 10442706 10442706 C T ATP2B2 Missense_Mutation p.E238K 0.17 deleterious(0) probably_damaging(0.998) TCGA-K4-A3WU-01 3 112358447 112358447 C T CCDC80 Silent p.V102V 0.16 TCGA-K4-A3WU-01 3 12447544 12447544 G C PPARG Silent p.A261A 0.14 TCGA-K4-A3WU-01 3 128598503 128598503 A G ACAD9 5'UTR 0.05 TCGA-K4-A3WU-01 3 12861592 12861592 A G CAND2 Silent p.P984P 0.11 TCGA-K4-A3WU-01 3 138738765 138738765 G A PRR23B Missense_Mutation p.R247C 0.11 deleterious(0.02) benign(0.013) TCGA-K4-A3WU-01 3 145788483 145788483 A G PLOD2 3'UTR 0.10 TCGA-K4-A3WU-01 3 169540297 169540297 C T LRRIQ4 Silent p.D196D 0.08 TCGA-K4-A3WU-01 3 196234952 196234952 C T SMCO1 Missense_Mutation p.E151K 0.11 tolerated(0.18) benign(0.355) TCGA-K4-A3WU-01 3 37476522 37476522 C T C3orf35 Silent p.A138A 0.07 TCGA-K4-A3WU-01 3 39230134 39230134 G T XIRP1 Missense_Mutation p.S268Y 0.20 deleterious(0) possibly_damaging(0.786) TCGA-K4-A3WU-01 3 41278172 41278172 T A CTNNB1 Missense_Mutation p.F683Y 0.06 tolerated(0.08) benign(0.008) TCGA-K4-A3WU-01 3 46414768 46414768 T C CCR5 Silent p.D125D 0.04 TCGA-K4-A3WU-01 3 49211748 49211748 T C KLHDC8B Silent p.R151R 0.08 TCGA-K4-A3WU-01 3 49756220 49756220 G A AMIGO3 Missense_Mutation p.L227F 0.08 deleterious(0.01) benign(0.037) TCGA-K4-A3WU-01 3 65365145 65365145 C T MAGI1 Missense_Mutation p.R929H 0.12 tolerated(0.13) benign(0.171) TCGA-K4-A3WU-01 3 77600062 77600062 G A ROBO2 Missense_Mutation p.D401N 0.09 deleterious(0) possibly_damaging(0.831) TCGA-K4-A3WU-01 4 102946423 102946423 G C BANK1 Missense_Mutation p.E451Q 0.10 tolerated(0.27) benign(0.011) TCGA-K4-A3WU-01 4 126240575 126240575 C T FAT4 Silent p.V1003V 0.08 TCGA-K4-A3WU-01 4 126411502 126411502 G A FAT4 Missense_Mutation p.V4509M 0.08 probably_damaging(0.996) TCGA-K4-A3WU-01 4 151771906 151771906 G A LRBA Missense_Mutation p.S1325L 0.18 deleterious(0) benign(0.113) TCGA-K4-A3WU-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.06 TCGA-K4-A3WU-01 4 153247165 153247165 G A FBXW7 Missense_Mutation p.S546L 0.13 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WU-01 4 39448824 39448824 C T KLB Silent p.F826F 0.19 TCGA-K4-A3WU-01 4 52861415 52861415 C T LRRC66 Missense_Mutation p.M591I 0.07 tolerated(0.42) benign(0.031) TCGA-K4-A3WU-01 4 52861829 52861829 C T LRRC66 Silent p.E453E 0.09 TCGA-K4-A3WU-01 4 70160521 70160521 A G UGT2B28 Silent p.R528R 0.12 TCGA-K4-A3WU-01 4 71527924 71527924 C T IGJ Missense_Mutation p.D25N 0.14 tolerated(0.12) benign(0.009) TCGA-K4-A3WU-01 4 95170811 95170811 G T SMARCAD1 Nonsense_Mutation p.E238* 0.15 TCGA-K4-A3WU-01 5 102518935 102518935 G A PPIP5K2 Missense_Mutation p.E975K 0.14 tolerated_low_confidence(0.76) benign(0.007) TCGA-K4-A3WU-01 5 132160002 132160002 C G SHROOM1 Missense_Mutation p.D451H 0.13 deleterious(0.03) benign(0.039) TCGA-K4-A3WU-01 5 140167320 140167320 C T PCDHA1 Missense_Mutation p.A482V 0.05 deleterious_low_confidence(0.04) benign(0.412) TCGA-K4-A3WU-01 5 140230132 140230132 G T PCDHA9 Silent p.V684V 0.18 TCGA-K4-A3WU-01 5 141050834 141050834 G C ARAP3 Nonsense_Mutation p.S663* 0.17 TCGA-K4-A3WU-01 5 145512562 145512562 G T LARS Silent p.L765L 0.11 TCGA-K4-A3WU-01 5 160757993 160757993 A G GABRB2 Missense_Mutation p.L325P 0.18 deleterious(0.02) probably_damaging(0.932) TCGA-K4-A3WU-01 5 167645734 167645734 A G TENM2 Missense_Mutation p.Y1613C 0.09 tolerated(0.06) possibly_damaging(0.76) TCGA-K4-A3WU-01 5 31521263 31521263 C G DROSHA Missense_Mutation p.R305T 0.08 deleterious_low_confidence(0) benign(0.204) TCGA-K4-A3WU-01 5 32143969 32143969 C A GOLPH3 Missense_Mutation p.W81C 0.11 deleterious(0.02) benign(0.113) TCGA-K4-A3WU-01 5 75902129 75902129 G A IQGAP2 Splice_Site p.X453_splice 0.08 TCGA-K4-A3WU-01 5 92929557 92929557 C T NR2F1 3'UTR 0.06 TCGA-K4-A3WU-01 6 102337572 102337572 G A GRIK2 Missense_Mutation p.D528N 0.10 deleterious(0) probably_damaging(0.998) TCGA-K4-A3WU-01 6 105725852 105725852 G A PREP 3'UTR 0.11 TCGA-K4-A3WU-01 6 119300685 119300685 T C FAM184A Splice_Site p.X768_splice 0.11 TCGA-K4-A3WU-01 6 1313431 1313431 C A FOXQ1 Silent p.R164R 0.09 TCGA-K4-A3WU-01 6 132874511 132874511 C A TAAR8 Missense_Mutation p.A227D 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-K4-A3WU-01 6 159046150 159046150 C T TMEM181 Silent p.F460F 0.05 TCGA-K4-A3WU-01 6 28547168 28547168 A T SCAND3 Missense_Mutation p.V150D 0.11 deleterious_low_confidence(0) benign(0.006) TCGA-K4-A3WU-01 6 31079947 31079947 G A C6orf15 Silent p.P63P 0.10 TCGA-K4-A3WU-01 6 31639913 31639913 G C CSNK2B-LY6G5B-1181 3'UTR 0.12 TCGA-K4-A3WU-01 6 35088699 35088699 G C TCP11 Silent p.L247L 0.15 TCGA-K4-A3WU-01 6 35387983 35387983 C G PPARD Silent p.L70L 0.14 TCGA-K4-A3WU-01 6 4892403 4892403 G A CDYL Missense_Mutation p.E161K 0.07 tolerated(0.33) benign(0.062) TCGA-K4-A3WU-01 6 50696937 50696937 G C TFAP2D Silent p.L265L 0.09 TCGA-K4-A3WU-01 6 53138015 53138015 C G ELOVL5 Intron 0.08 TCGA-K4-A3WU-01 6 8041460 8041460 C T BLOC1S5 Silent p.L79L 0.15 TCGA-K4-A3WU-01 7 100281007 100281007 G C GIGYF1 Missense_Mutation p.R705G 0.10 deleterious(0.02) unknown(0) TCGA-K4-A3WU-01 7 1037332 1037332 C T C7orf50 Missense_Mutation p.E172K 0.09 tolerated(0.37) benign(0.001) TCGA-K4-A3WU-01 7 1037363 1037363 C G C7orf50 Missense_Mutation p.Q161H 0.10 deleterious(0) probably_damaging(0.968) TCGA-K4-A3WU-01 7 21920404 21920404 A G DNAH11 Missense_Mutation p.R4101G 0.08 probably_damaging(0.956) TCGA-K4-A3WU-01 7 2274900 2274900 G C FTSJ2 Missense_Mutation p.Q200E 0.12 tolerated(0.73) benign(0.003) TCGA-K4-A3WU-01 7 55259449 55259449 G A EGFR Missense_Mutation p.R836H 0.08 deleterious(0) probably_damaging(0.997) TCGA-K4-A3WU-01 7 65425832 65425832 G A GUSB 3'UTR 0.11 TCGA-K4-A3WU-01 7 91691704 91691704 G C AKAP9 Missense_Mutation p.E1961Q 0.07 probably_damaging(0.999) TCGA-K4-A3WU-01 7 93067391 93067391 G T CALCR Missense_Mutation p.P338H 0.11 deleterious(0) probably_damaging(1) TCGA-K4-A3WU-01 8 100796630 100796630 G A VPS13B Missense_Mutation p.D2648N 0.11 deleterious(0.01) possibly_damaging(0.822) TCGA-K4-A3WU-01 8 101932934 101932934 C G YWHAZ Missense_Mutation p.G242A 0.06 tolerated_low_confidence(0.07) unknown(0) TCGA-K4-A3WU-01 8 113299395 113299395 T A CSMD3 Missense_Mutation p.T3077S 0.06 tolerated(0.62) benign(0.004) TCGA-K4-A3WU-01 8 142161801 142161801 C T DENND3 Silent p.F233F 0.17 TCGA-K4-A3WU-01 8 145693121 145693121 G C KIFC2 Missense_Mutation p.E214Q 0.12 tolerated(0.14) possibly_damaging(0.649) TCGA-K4-A3WU-01 8 27099982 27099982 G A STMN4 Missense_Mutation p.P14L 0.16 deleterious(0.04) probably_damaging(1) TCGA-K4-A3WU-01 8 42023048 42023048 G T AP3M2 Missense_Mutation p.R258L 0.06 deleterious(0.01) benign(0.433) TCGA-K4-A3WU-01 8 57079984 57079984 C T PLAG1 Silent p.L107L 0.12 TCGA-K4-A3WU-01 8 68334769 68334769 G T CPA6 Silent p.I428I 0.07 TCGA-K4-A3WU-01 9 116152053 116152053 C T ALAD Missense_Mutation p.R209Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-K4-A3WU-01 9 131704017 131704017 C T PHYHD1 Silent p.L293L 0.20 TCGA-K4-A3WU-01 9 136324257 136324257 G A ADAMTS13 Silent p.P1413P 0.10 TCGA-K4-A3WU-01 9 137328331 137328331 C G RXRA Silent p.L420L 0.06 TCGA-K4-A3WU-01 9 140074639 140074639 C G ANAPC2 Missense_Mutation p.Q628H 0.12 tolerated(0.05) benign(0.003) TCGA-K4-A3WU-01 9 140076196 140076196 C T ANAPC2 Missense_Mutation p.D469N 0.10 tolerated(0.12) benign(0.06) TCGA-K4-A3WU-01 9 19119735 19119735 A T PLIN2 Silent p.R230R 0.07 TCGA-K4-A3WU-01 9 19119764 19119764 C A PLIN2 Nonsense_Mutation p.G221* 0.06 TCGA-K4-A3WU-01 9 19121087 19121087 G A PLIN2 Missense_Mutation p.S129F 0.09 deleterious(0.01) possibly_damaging(0.633) TCGA-K4-A3WU-01 9 34372105 34372105 C T KIAA1161 Silent p.L245L 0.06 TCGA-K4-A3WU-01 9 34372876 34372876 T C KIAA1161 5'UTR 0.05 TCGA-K4-A3WU-01 9 73167853 73167853 T C TRPM3 Missense_Mutation p.I1149V 0.09 deleterious(0.01) benign(0.31) TCGA-K4-A3WU-01 9 85913693 85913693 T A FRMD3 Missense_Mutation p.K347M 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-K4-A3WU-01 9 90262280 90262280 C G DAPK1 Missense_Mutation p.L431V 0.15 tolerated(0.09) benign(0.376) TCGA-K4-A3WU-01 X 125685907 125685907 C T DCAF12L1 Missense_Mutation p.D229N 0.31 tolerated(0.22) benign(0.005) TCGA-K4-A3WU-01 X 134186001 134186001 C A FAM127B Missense_Mutation p.Q46H 0.36 deleterious(0) probably_damaging(0.999) TCGA-K4-A3WU-01 X 134186155 134186155 C T FAM127B 5'UTR 0.35 TCGA-K4-A3WU-01 X 153420214 153420214 G A OPN1LW Silent p.A248A 0.14 TCGA-K4-A3WU-01 X 3238516 3238516 G C MXRA5 Missense_Mutation p.T1737S 0.46 deleterious(0.03) probably_damaging(0.982) TCGA-K4-A3WU-01 X 47092454 47092454 C T USP11 Silent p.V47V 0.28 TCGA-K4-A3WU-01 X 86869502 86869502 A G KLHL4 Missense_Mutation p.K219R 0.11 tolerated(0.54) benign(0.031) TCGA-K4-A3WV-01 10 101571351 101571351 A T ABCC2 Silent p.T653T 0.50 TCGA-K4-A3WV-01 10 6139098 6139098 A - RBM17 Frame_Shift_Del p.K24Nfs*9 0.21 TCGA-K4-A3WV-01 10 94821038 94821038 G A CYP26C1 Silent p.L6L 0.60 TCGA-K4-A3WV-01 10 98743230 98743230 G A C10orf12 Missense_Mutation p.E695K 0.18 tolerated(0.9) benign(0.03) TCGA-K4-A3WV-01 11 116619253 116619253 G A BUD13 Missense_Mutation p.A602V 0.40 deleterious(0) probably_damaging(0.954) TCGA-K4-A3WV-01 11 116701559 116701559 C T APOC3 Silent p.T42T 0.25 TCGA-K4-A3WV-01 11 124972176 124972176 C T TMEM218 5'UTR 0.47 TCGA-K4-A3WV-01 11 22249087 22249087 C T ANO5 Silent p.I201I 0.27 TCGA-K4-A3WV-01 11 27016101 27016101 A C FIBIN Missense_Mutation p.S10R 0.61 tolerated_low_confidence(0.2) benign(0.086) TCGA-K4-A3WV-01 11 56258428 56258428 C A OR5M8 Missense_Mutation p.C140F 0.40 deleterious(0) probably_damaging(1) TCGA-K4-A3WV-01 11 65649734 65649734 G A CTSW Silent p.E125E 0.15 TCGA-K4-A3WV-01 11 67286529 67286529 C T CABP2 3'UTR 0.21 TCGA-K4-A3WV-01 11 92623737 92623737 G A FAT3 Missense_Mutation p.D4410N 0.31 benign(0.064) TCGA-K4-A3WV-01 12 112670808 112670808 C G HECTD4 Missense_Mutation p.K1853N 0.58 possibly_damaging(0.825) TCGA-K4-A3WV-01 12 39760203 39760203 A G KIF21A Silent p.T284T 0.30 TCGA-K4-A3WV-01 12 56143622 56143622 G A GDF11 Missense_Mutation p.G394S 0.20 tolerated(0.14) possibly_damaging(0.505) TCGA-K4-A3WV-01 12 70953310 70953310 G T PTPRB Missense_Mutation p.N1509K 0.25 deleterious(0.01) benign(0.109) TCGA-K4-A3WV-01 14 70515701 70515701 G A SLC8A3 Silent p.Y730Y 0.39 TCGA-K4-A3WV-01 14 95579563 95579563 T A DICER1 Splice_Site p.X636_splice 0.28 TCGA-K4-A3WV-01 15 25349680 25349680 G T SNHG14 RNA 0.14 TCGA-K4-A3WV-01 15 48052549 48052549 C T SEMA6D Missense_Mutation p.S53L 0.15 deleterious(0) probably_damaging(0.997) TCGA-K4-A3WV-01 15 63637770 63637770 C T CA12 Missense_Mutation p.R112H 0.13 tolerated(0.08) benign(0.021) TCGA-K4-A3WV-01 16 3633236 3633236 T C SLX4 Missense_Mutation p.H1672R 0.48 tolerated(0.52) benign(0) TCGA-K4-A3WV-01 17 1631759 1631759 A G WDR81 Missense_Mutation p.E1169G 0.12 tolerated(0.12) benign(0.281) TCGA-K4-A3WV-01 17 7797579 7797579 G T CHD3 Missense_Mutation p.K416N 0.19 benign(0.403) TCGA-K4-A3WV-01 17 79892987 79892987 G A PYCR1 Missense_Mutation p.R119C 0.42 deleterious(0) probably_damaging(1) TCGA-K4-A3WV-01 19 11325227 11325227 A G DOCK6 Splice_Site p.X1401_splice 0.46 TCGA-K4-A3WV-01 19 15226826 15226826 G A ILVBL Missense_Mutation p.R510W 0.08 deleterious(0.03) benign(0.047) TCGA-K4-A3WV-01 19 44127538 44127538 C T CADM4 Missense_Mutation p.E371K 0.25 deleterious(0.04) probably_damaging(0.985) TCGA-K4-A3WV-01 19 46341740 46341740 C T SYMPK Silent p.T407T 0.29 TCGA-K4-A3WV-01 19 47197163 47197163 G A PRKD2 Silent p.D515D 0.25 TCGA-K4-A3WV-01 19 51535178 51535178 G T KLK12 Silent p.G137G 0.26 TCGA-K4-A3WV-01 19 9063763 9063763 G A MUC16 Missense_Mutation p.P7895S 0.37 unknown(0) TCGA-K4-A3WV-01 1 1226700 1226700 C T SCNN1D Missense_Mutation p.L707F 0.19 deleterious(0.02) possibly_damaging(0.636) TCGA-K4-A3WV-01 1 169487767 169487767 C G F5 Missense_Mutation p.K2076N 0.11 tolerated(0.13) benign(0.04) TCGA-K4-A3WV-01 1 201828120 201828120 C T IPO9 Missense_Mutation p.S489L 0.25 tolerated(0.07) benign(0.021) TCGA-K4-A3WV-01 1 216595708 216595708 A G USH2A 5'UTR 0.23 TCGA-K4-A3WV-01 1 223984139 223984139 C T TP53BP2 Missense_Mutation p.R701Q 0.47 deleterious(0) probably_damaging(0.996) TCGA-K4-A3WV-01 1 233314848 233314848 T C PCNXL2 Missense_Mutation p.H1047R 0.26 deleterious(0) benign(0.439) TCGA-K4-A3WV-01 1 27106539 27106539 G A ARID1A Nonsense_Mutation p.W2050* 0.51 TCGA-K4-A3WV-01 1 38018319 38018319 G A SNIP1 Missense_Mutation p.S85L 0.33 tolerated(0.09) benign(0.051) TCGA-K4-A3WV-01 1 74670509 74670509 G A FPGT Missense_Mutation p.D260N 0.33 tolerated(0.35) benign(0.002) TCGA-K4-A3WV-01 20 18371024 18371024 T G DZANK1 Missense_Mutation p.E630A 0.22 deleterious(0) possibly_damaging(0.839) TCGA-K4-A3WV-01 20 39728847 39728847 G A TOP1 Missense_Mutation p.R376Q 0.45 deleterious(0) probably_damaging(1) TCGA-K4-A3WV-01 20 5904368 5904368 C T CHGB Silent p.Y526Y 0.06 TCGA-K4-A3WV-01 21 41142905 41142905 G A IGSF5 Missense_Mutation p.V161I 0.43 tolerated(0.42) possibly_damaging(0.615) TCGA-K4-A3WV-01 22 45719182 45719182 C T FAM118A Silent p.A58A 0.05 TCGA-K4-A3WV-01 2 105473459 105473459 G C POU3F3 Silent p.T497T 0.20 TCGA-K4-A3WV-01 2 133539920 133539920 T G NCKAP5 Missense_Mutation p.Q1488H 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-K4-A3WV-01 2 136107733 136107733 C T ZRANB3 Missense_Mutation p.D138N 0.17 tolerated(0.16) possibly_damaging(0.545) TCGA-K4-A3WV-01 2 141079602 141079602 A T LRP1B Silent p.S4190S 0.58 TCGA-K4-A3WV-01 2 1544451 1544451 G A TPO Missense_Mutation p.V902I 0.26 tolerated_low_confidence(0.4) benign(0.006) TCGA-K4-A3WV-01 2 175436262 175436263 - CGTGT WIPF1 Intron 0.15 TCGA-K4-A3WV-01 2 228104885 228104885 C T COL4A3 Silent p.P57P 0.88 TCGA-K4-A3WV-01 2 27876283 27876283 A C SUPT7L 3'UTR 0.49 TCGA-K4-A3WV-01 2 61622120 61622120 C A USP34 Missense_Mutation p.L207F 0.06 deleterious(0.02) probably_damaging(0.979) TCGA-K4-A3WV-01 2 70515288 70515288 A T SNRPG Nonsense_Mutation p.L31* 0.06 TCGA-K4-A3WV-01 2 70890768 70890768 G A ADD2 Missense_Mutation p.T657M 0.10 tolerated(0.08) benign(0.425) TCGA-K4-A3WV-01 2 97370381 97370381 A G LMAN2L 3'Flank 0.41 TCGA-K4-A3WV-01 3 100373656 100373656 T A GPR128 Intron 0.36 TCGA-K4-A3WV-01 3 112715770 112715770 G C GTPBP8 Missense_Mutation p.V200L 0.08 tolerated(0.31) benign(0.015) TCGA-K4-A3WV-01 3 147128234 147128234 C T ZIC1 Missense_Mutation p.A112V 0.09 tolerated(0.12) benign(0.17) TCGA-K4-A3WV-01 3 52417508 52417508 G A DNAH1 Missense_Mutation p.R2683Q 0.35 benign(0.273) TCGA-K4-A3WV-01 4 119475153 119475153 C T CEP170P1 RNA 0.71 TCGA-K4-A3WV-01 4 40752759 40752759 G A NSUN7 Missense_Mutation p.E17K 0.32 deleterious_low_confidence(0.02) benign(0.085) TCGA-K4-A3WV-01 4 71522981 71522981 G T IGJ Silent p.I72I 0.21 TCGA-K4-A3WV-01 4 961427 961427 C T DGKQ Silent p.T299T 0.47 TCGA-K4-A3WV-01 5 140229323 140229323 C T PCDHA9 Missense_Mutation p.R415C 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.479) TCGA-K4-A3WV-01 5 140229587 140229587 T G PCDHA9 Missense_Mutation p.S503A 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-K4-A3WV-01 5 176882976 176882976 C T PRR7 Missense_Mutation p.P227S 0.58 tolerated(0.76) benign(0.128) TCGA-K4-A3WV-01 5 178139989 178139989 G C ZNF354A Missense_Mutation p.S297C 0.23 deleterious(0.01) benign(0.021) TCGA-K4-A3WV-01 6 72889512 72889512 A T RIMS1 Missense_Mutation p.S236C 0.66 deleterious(0.01) possibly_damaging(0.599) TCGA-K4-A3WV-01 6 7580718 7580718 A C DSP Missense_Mutation p.Q1432P 0.24 benign(0.261) TCGA-K4-A3WV-01 7 149508082 149508082 G A SSPO RNA 0.24 TCGA-K4-A3WV-01 7 33217147 33217147 A G BBS9 Missense_Mutation p.H129R 0.48 deleterious(0) probably_damaging(0.997) TCGA-K4-A3WV-01 7 39472816 39472816 G T POU6F2 Silent p.G389G 0.13 TCGA-K4-A3WV-01 7 6777303 6777303 G T PMS2CL RNA 0.25 TCGA-K4-A3WV-01 8 10555320 10555320 C T C8orf74 Silent p.L151L 0.47 TCGA-K4-A3WV-01 8 123965291 123965291 C T ZHX2 Missense_Mutation p.A514V 0.65 tolerated(0.14) benign(0.116) TCGA-K4-A3WV-01 9 113168736 113168736 G A SVEP1 Silent p.A3048A 0.28 TCGA-K4-A3WV-01 9 119115032 119115032 C G PAPPA Missense_Mutation p.P1338A 0.52 deleterious(0.02) possibly_damaging(0.822) TCGA-K4-A3WV-01 9 135374123 135374123 C G C9orf171 Silent p.P115P 0.29 TCGA-K4-A3WV-01 9 139273307 139273307 G A SNAPC4 Missense_Mutation p.P991L 0.50 tolerated(0.09) benign(0.009) TCGA-K4-A3WV-01 9 84300624 84300624 C A TLE1 Missense_Mutation p.M67I 0.33 deleterious(0.03) possibly_damaging(0.74) TCGA-K4-A3WV-01 9 99250477 99250477 G A HABP4 Missense_Mutation p.R369H 0.39 deleterious(0.05) possibly_damaging(0.581) TCGA-K4-A3WV-01 X 32486811 32486811 A G DMD Missense_Mutation p.L989P 0.22 probably_damaging(0.996) TCGA-K4-A3WV-01 X 50659529 50659529 C T BMP15 Silent p.V367V 0.20 TCGA-K4-A3WV-01 X 71351227 71351227 C T RGAG4 Missense_Mutation p.R55H 0.27 tolerated_low_confidence(0.08) benign(0.08) TCGA-K4-A3WV-01 X 79283540 79283540 C T TBX22 Missense_Mutation p.T305I 0.38 deleterious(0.02) benign(0.024) TCGA-K4-A4AB-01 10 101515429 101515429 C G CUTC Missense_Mutation p.S252C 0.52 deleterious(0.05) benign(0.001) TCGA-K4-A4AB-01 10 102778773 102778773 C T PDZD7 Missense_Mutation p.G377E 0.38 tolerated(0.49) benign(0.002) TCGA-K4-A4AB-01 10 12858264 12858264 G A CAMK1D Missense_Mutation p.R257Q 0.34 tolerated(0.27) benign(0.037) TCGA-K4-A4AB-01 10 81058181 81058181 G T ZMIZ1 Missense_Mutation p.V504L 0.34 benign(0.044) TCGA-K4-A4AB-01 10 96005737 96005737 G A PLCE1 Missense_Mutation p.D819N 0.25 deleterious(0.03) benign(0.32) TCGA-K4-A4AB-01 10 98079147 98079147 G A DNTT Silent p.T169T 0.31 TCGA-K4-A4AB-01 11 118344057 118344057 C T KMT2A Missense_Mutation p.S728F 0.64 benign(0.276) TCGA-K4-A4AB-01 11 128774378 128774378 C T C11orf45 Silent p.L28L 0.54 TCGA-K4-A4AB-01 11 46406640 46406640 C T CHRM4 3'UTR 0.20 TCGA-K4-A4AB-01 11 4936310 4936310 G A OR51G2 Missense_Mutation p.A195V 0.06 deleterious(0.02) benign(0.031) TCGA-K4-A4AB-01 11 49598273 49598273 A G RP11-707M1.1 RNA 0.33 TCGA-K4-A4AB-01 11 55595241 55595241 C T OR5L2 Missense_Mutation p.P183S 0.36 tolerated(0.2) probably_damaging(0.917) TCGA-K4-A4AB-01 11 55798315 55798315 T C OR5AS1 Missense_Mutation p.C141R 0.09 deleterious(0.02) probably_damaging(0.954) TCGA-K4-A4AB-01 11 62433367 62433367 C T METTL12 Nonsense_Mutation p.R6* 0.34 TCGA-K4-A4AB-01 11 67402342 67402342 G A TBX10 Silent p.L108L 0.36 TCGA-K4-A4AB-01 11 7531133 7531133 G A OLFML1 Nonsense_Mutation p.W308* 0.31 TCGA-K4-A4AB-01 11 76893106 76893106 C T MYO7A Missense_Mutation p.A1005V 0.17 deleterious(0) benign(0.009) TCGA-K4-A4AB-01 11 94277903 94277903 G A FUT4 Missense_Mutation p.D202N 0.43 tolerated(0.31) benign(0.048) TCGA-K4-A4AB-01 12 133358998 133358998 C T GOLGA3 Missense_Mutation p.E1117K 0.36 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AB-01 12 4479679 4479679 G C FGF23 Missense_Mutation p.R196G 0.39 deleterious(0.02) possibly_damaging(0.806) TCGA-K4-A4AB-01 12 57118263 57118263 C T NACA Missense_Mutation p.E15K 0.75 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-K4-A4AB-01 12 7077741 7077741 T C PHB2 Missense_Mutation p.I104V 0.34 tolerated(0.05) benign(0.075) TCGA-K4-A4AB-01 13 101294500 101294500 C T TMTC4 Missense_Mutation p.A236T 0.49 deleterious(0) probably_damaging(0.944) TCGA-K4-A4AB-01 13 99105295 99105295 G T STK24 3'UTR 0.50 TCGA-K4-A4AB-01 14 100728716 100728716 C T YY1 Missense_Mutation p.S252L 0.27 deleterious(0) possibly_damaging(0.567) TCGA-K4-A4AB-01 14 101419750 101419750 C T SNORD114-3 RNA 0.38 TCGA-K4-A4AB-01 14 102807669 102807669 C G ZNF839 Missense_Mutation p.P646R 0.29 tolerated(0.21) benign(0.004) TCGA-K4-A4AB-01 14 105423014 105423014 C T AHNAK2 Missense_Mutation p.G76S 0.09 benign(0.062) TCGA-K4-A4AB-01 14 23597256 23597256 G A SLC7A8 Silent p.H471H 0.38 TCGA-K4-A4AB-01 14 26918047 26918047 G A NOVA1 Silent p.I214I 0.33 TCGA-K4-A4AB-01 14 55878361 55878361 C G ATG14 Missense_Mutation p.Q60H 0.29 tolerated(0.11) benign(0.002) TCGA-K4-A4AB-01 14 91044554 91044554 G A TTC7B Missense_Mutation p.R736C 0.38 deleterious(0) probably_damaging(0.912) TCGA-K4-A4AB-01 14 95905371 95905371 C T SYNE3 Missense_Mutation p.R792H 0.33 tolerated(0.12) benign(0.186) TCGA-K4-A4AB-01 15 22383245 22383245 A G OR4N4 Missense_Mutation p.Y258C 0.26 deleterious(0) probably_damaging(1) TCGA-K4-A4AB-01 15 22383258 22383258 C T OR4N4 Silent p.F262F 0.23 TCGA-K4-A4AB-01 15 25940040 25940040 C A ATP10A Missense_Mutation p.R1005L 0.30 deleterious(0) probably_damaging(0.986) TCGA-K4-A4AB-01 15 42702646 42702646 C A CAPN3 Silent p.L712L 0.56 TCGA-K4-A4AB-01 15 59205829 59205829 C A SLTM Nonsense_Mutation p.E128* 0.39 TCGA-K4-A4AB-01 15 75941703 75941703 G A SNX33 Missense_Mutation p.S87N 0.55 tolerated(0.36) benign(0.001) TCGA-K4-A4AB-01 16 1308104 1308104 G A TPSD1 Missense_Mutation p.V189I 0.45 tolerated(1) benign(0.01) TCGA-K4-A4AB-01 16 28990582 28990582 G A SPNS1 Missense_Mutation p.R184Q 0.26 deleterious(0) possibly_damaging(0.856) TCGA-K4-A4AB-01 16 47189563 47189563 C A ITFG1 3'UTR 0.59 TCGA-K4-A4AB-01 16 48119593 48119593 G A ABCC12 Nonsense_Mutation p.Q1247* 0.25 TCGA-K4-A4AB-01 16 49407805 49407805 G A C16orf78 5'UTR 0.21 TCGA-K4-A4AB-01 16 58589197 58589197 A G CNOT1 Missense_Mutation p.M950T 0.21 deleterious(0) benign(0.417) TCGA-K4-A4AB-01 16 66434798 66434798 C T CDH5 Silent p.T572T 0.46 TCGA-K4-A4AB-01 16 83999057 83999057 G A OSGIN1 Silent p.A293A 0.58 TCGA-K4-A4AB-01 16 88713227 88713227 C T CYBA Missense_Mutation p.A75T 0.48 tolerated(0.58) benign(0.007) TCGA-K4-A4AB-01 17 28599906 28599906 C G BLMH Silent p.V271V 0.33 TCGA-K4-A4AB-01 17 29665073 29665073 A G NF1 Silent p.Q2245Q 0.42 TCGA-K4-A4AB-01 17 33592292 33592292 G T SLFN5 Missense_Mutation p.Q687H 0.27 deleterious(0) probably_damaging(0.923) TCGA-K4-A4AB-01 17 42156557 42156557 G A HDAC5 Silent p.I1012I 0.36 TCGA-K4-A4AB-01 17 42476563 42476563 C G GPATCH8 Missense_Mutation p.R961P 0.33 deleterious(0.01) unknown(0) TCGA-K4-A4AB-01 17 44055782 44055782 G A MAPT Missense_Mutation p.E117K 0.34 deleterious(0.02) benign(0.036) TCGA-K4-A4AB-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.75 TCGA-K4-A4AB-01 17 7756685 7756685 A G KDM6B Missense_Mutation p.D1632G 0.23 probably_damaging(0.997) TCGA-K4-A4AB-01 18 30846940 30846940 G A CCDC178 Missense_Mutation p.T450M 0.40 tolerated(0.34) benign(0.002) TCGA-K4-A4AB-01 18 61328328 61328328 G A SERPINB3 Silent p.V41V 0.34 TCGA-K4-A4AB-01 19 40433886 40433886 G A FCGBP Missense_Mutation p.A128V 0.12 benign(0.03) TCGA-K4-A4AB-01 19 42485710 42485710 G A ATP1A3 Missense_Mutation p.R474C 0.11 deleterious(0) probably_damaging(0.987) TCGA-K4-A4AB-01 19 4333721 4333721 C T STAP2 Silent p.L89L 0.36 TCGA-K4-A4AB-01 19 48946603 48946603 G A GRIN2D Silent p.P1140P 0.40 TCGA-K4-A4AB-01 19 5111908 5111908 C A KDM4B Intron 0.25 TCGA-K4-A4AB-01 19 51994837 51994837 G T SIGLEC12 3'UTR 0.20 TCGA-K4-A4AB-01 19 52129343 52129343 G A SIGLEC5 Missense_Mutation p.A469V 0.58 deleterious(0.01) possibly_damaging(0.905) TCGA-K4-A4AB-01 19 58439152 58439152 C T ZNF418 Missense_Mutation p.G133R 0.49 tolerated(0.28) probably_damaging(0.996) TCGA-K4-A4AB-01 19 9069856 9069856 G A MUC16 Nonsense_Mutation p.Q5864* 0.42 TCGA-K4-A4AB-01 1 156561719 156561719 G A APOA1BP Silent p.L41L 0.45 TCGA-K4-A4AB-01 1 17085018 17085018 A G MST1L RNA 0.09 TCGA-K4-A4AB-01 1 228482592 228482592 G A OBSCN Missense_Mutation p.G4265E 0.34 probably_damaging(1) TCGA-K4-A4AB-01 1 234536968 234536968 A G TARBP1 Missense_Mutation p.F1344L 0.27 deleterious(0) probably_damaging(0.997) TCGA-K4-A4AB-01 1 3745892 3745892 C G CEP104 Missense_Mutation p.E697Q 0.35 tolerated(0.17) benign(0.209) TCGA-K4-A4AB-01 1 67299711 67299711 G C WDR78 Missense_Mutation p.I618M 0.23 deleterious(0.05) possibly_damaging(0.507) TCGA-K4-A4AB-01 1 87170540 87170540 C G SH3GLB1 5'Flank 0.40 TCGA-K4-A4AB-01 1 98015254 98015254 T C DPYD Silent p.P462P 0.22 TCGA-K4-A4AB-01 20 61485398 61485398 G C TCFL5 Missense_Mutation p.I450M 0.38 deleterious(0.01) possibly_damaging(0.511) TCGA-K4-A4AB-01 22 22324718 22324718 G A TOP3B Missense_Mutation p.R149W 0.31 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AB-01 22 22385848 22385848 C T IGLV4-69 Nonsense_Mutation p.Q113* 0.30 TCGA-K4-A4AB-01 22 26688303 26688303 C G SEZ6L Intron 0.46 TCGA-K4-A4AB-01 22 36863765 36863765 G A TXN2 3'UTR 0.47 TCGA-K4-A4AB-01 22 42394846 42394846 C T WBP2NL Silent p.T8T 0.48 TCGA-K4-A4AB-01 22 44282275 44282275 C T PNPLA5 Nonsense_Mutation p.W286* 0.33 TCGA-K4-A4AB-01 2 101620753 101620755 AGT - RPL31 Intron 0.65 TCGA-K4-A4AB-01 2 74432963 74432964 - T MTHFD2 Frame_Shift_Ins p.P79Sfs*22 0.42 TCGA-K4-A4AB-01 2 97505284 97505284 G T ANKRD23 3'UTR 0.70 TCGA-K4-A4AB-01 3 100023715 100023715 C A TBC1D23 Missense_Mutation p.A430D 0.23 deleterious(0.02) probably_damaging(0.985) TCGA-K4-A4AB-01 3 172165522 172165522 G A GHSR Missense_Mutation p.L228F 0.27 deleterious(0) probably_damaging(0.998) TCGA-K4-A4AB-01 3 172165526 172165526 G A GHSR Silent p.F226F 0.27 TCGA-K4-A4AB-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.33 tolerated(0.11) possibly_damaging(0.529) TCGA-K4-A4AB-01 3 180359830 180359830 T C CCDC39 Missense_Mutation p.M609V 0.22 deleterious(0.02) possibly_damaging(0.544) TCGA-K4-A4AB-01 3 20161115 20161115 G C KAT2B Silent p.G392G 0.23 TCGA-K4-A4AB-01 3 71096092 71096092 C T FOXP1 Splice_Site p.X224_splice 0.33 TCGA-K4-A4AB-01 4 118006125 118006125 G C TRAM1L1 Missense_Mutation p.S142C 0.28 deleterious(0) probably_damaging(0.993) TCGA-K4-A4AB-01 4 158238833 158238833 T G GRIA2 Silent p.V230V 0.50 TCGA-K4-A4AB-01 4 17847521 17847521 C A NCAPG 3'Flank 0.34 TCGA-K4-A4AB-01 4 2717761 2717761 C T FAM193A Silent p.L1212L 0.31 TCGA-K4-A4AB-01 4 47428101 47428101 C T GABRB1 3'UTR 0.36 TCGA-K4-A4AB-01 4 80246702 80246702 G A NAA11 Silent p.H110H 0.36 TCGA-K4-A4AB-01 5 118970191 118970191 G - FAM170A Frame_Shift_Del p.I251Sfs*17 0.13 TCGA-K4-A4AB-01 5 132232119 132232119 C T AFF4 Missense_Mutation p.E735K 0.40 tolerated(0.85) benign(0.171) TCGA-K4-A4AB-01 5 140237280 140237280 G A PCDHA10 Silent p.T549T 0.21 TCGA-K4-A4AB-01 5 140537729 140537729 G A PCDHB17 3'UTR 0.46 TCGA-K4-A4AB-01 5 147693762 147693762 G C SPINK7 Missense_Mutation p.E63Q 0.24 tolerated(0.07) benign(0.419) TCGA-K4-A4AB-01 5 170395287 170395287 G T RANBP17 Missense_Mutation p.R539L 0.07 deleterious(0.02) benign(0.006) TCGA-K4-A4AB-01 5 178358366 178358366 A G ZFP2 Missense_Mutation p.N18D 0.49 tolerated(0.76) benign(0) TCGA-K4-A4AB-01 5 43122225 43122225 T C ZNF131 Silent p.L24L 0.47 TCGA-K4-A4AB-01 5 85913819 85913819 G C COX7C 5'UTR 0.25 TCGA-K4-A4AB-01 6 132643910 132643910 C A MOXD1 Missense_Mutation p.G405W 0.41 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AB-01 6 133004406 133004406 G A VNN1 Missense_Mutation p.T472I 0.53 deleterious(0.04) probably_damaging(0.999) TCGA-K4-A4AB-01 6 144784000 144784000 G T UTRN Nonsense_Mutation p.E1022* 0.23 TCGA-K4-A4AB-01 6 151673794 151673794 C A AKAP12 Missense_Mutation p.A1423E 0.46 deleterious(0.01) possibly_damaging(0.852) TCGA-K4-A4AB-01 6 152265629 152265629 C A ESR1 Missense_Mutation p.A361E 0.40 deleterious(0) probably_damaging(1) TCGA-K4-A4AB-01 6 163983040 163983040 G A QKI Silent p.K191K 0.43 TCGA-K4-A4AB-01 6 27107308 27107308 C A HIST1H4I Missense_Mutation p.T74K 0.29 deleterious(0.01) probably_damaging(0.956) TCGA-K4-A4AB-01 6 30673873 30673873 G A MDC1 Silent p.G1029G 0.47 TCGA-K4-A4AB-01 6 34855587 34855587 C T TAF11 Missense_Mutation p.E50K 0.47 tolerated(0.11) possibly_damaging(0.725) TCGA-K4-A4AB-01 6 41309536 41309536 T G NCR2 Silent p.S133S 0.45 TCGA-K4-A4AB-01 7 146805381 146805381 G A CNTNAP2 Silent p.Q231Q 0.23 TCGA-K4-A4AB-01 7 149174803 149174803 G C ZNF746 Missense_Mutation p.I188M 0.48 deleterious(0.01) probably_damaging(0.977) TCGA-K4-A4AB-01 7 150647314 150647314 G A KCNH2 Silent p.Y780Y 0.32 TCGA-K4-A4AB-01 7 23221674 23221682 GAAGACGCC - NUPL2 5'UTR 0.09 TCGA-K4-A4AB-01 7 23221693 23221693 G T NUPL2 5'UTR 0.13 TCGA-K4-A4AB-01 7 83758452 83758452 C T SEMA3A Missense_Mutation p.G107E 0.27 deleterious(0) probably_damaging(0.997) TCGA-K4-A4AB-01 7 8790921 8790921 G A NXPH1 Missense_Mutation p.G113D 0.31 deleterious(0) probably_damaging(0.993) TCGA-K4-A4AB-01 7 92099563 92099563 C T ERVW-1 Missense_Mutation p.G45R 0.41 tolerated_low_confidence(0.09) probably_damaging(0.955) TCGA-K4-A4AB-01 8 134147110 134147110 A G TG 3'UTR 0.28 TCGA-K4-A4AB-01 8 142367976 142367976 A T GPR20 Missense_Mutation p.N16K 0.26 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-K4-A4AB-01 8 143958156 143958156 C G CYP11B1 Missense_Mutation p.W247C 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-K4-A4AB-01 8 145773809 145773809 C T ARHGAP39 Missense_Mutation p.E221K 0.39 tolerated(0.23) probably_damaging(0.998) TCGA-K4-A4AB-01 9 101904817 101904817 G A TGFBR1 Splice_Site p.X269_splice 0.68 TCGA-K4-A4AB-01 9 111741706 111741706 G A CTNNAL1 Missense_Mutation p.S319F 0.64 tolerated(0.73) benign(0.078) TCGA-K4-A4AB-01 9 131117338 131117338 C T SLC27A4 Missense_Mutation p.P444L 0.14 deleterious(0.01) probably_damaging(1) TCGA-K4-A4AB-01 X 100492731 100492731 G A DRP2 Silent p.V135V 0.82 TCGA-K4-A4AB-01 X 153416241 153416241 G A OPN1LW Missense_Mutation p.A76T 0.25 deleterious(0.01) benign(0.023) TCGA-K4-A4AB-01 X 30578311 30578311 G C CXorf21 Silent p.L54L 0.66 TCGA-K4-A4AB-01 X 44942821 44942821 T C KDM6A Missense_Mutation p.L1134P 0.67 deleterious(0) probably_damaging(1) TCGA-K4-A4AB-01 X 46898446 46898446 G T JADE3 Missense_Mutation p.L317F 0.82 tolerated(0.29) possibly_damaging(0.892) TCGA-K4-A4AB-01 X 47041234 47041238 CCCCA - RBM10 Frame_Shift_Del p.P555Cfs*20 0.53 TCGA-K4-A4AB-01 X 47500685 47500685 C T ELK1 Silent p.K52K 0.77 TCGA-K4-A4AC-01 10 113920454 113920454 A G GPAM Missense_Mutation p.F556S 0.16 deleterious(0.02) benign(0.367) TCGA-K4-A4AC-01 10 116925335 116925335 G A ATRNL1 Missense_Mutation p.S341N 0.24 tolerated(0.55) benign(0.002) TCGA-K4-A4AC-01 10 125622155 125622155 G A CPXM2 Missense_Mutation p.A163V 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-K4-A4AC-01 10 17107538 17107538 T G CUBN Missense_Mutation p.L1036F 0.21 tolerated(0.1) benign(0.295) TCGA-K4-A4AC-01 10 25312114 25312114 C T THNSL1 5'UTR 0.19 TCGA-K4-A4AC-01 10 25888025 25888025 C G GPR158 Nonsense_Mutation p.S1157* 0.21 TCGA-K4-A4AC-01 10 70143620 70143620 G T RUFY2 Missense_Mutation p.Q327K 0.08 tolerated(0.22) benign(0.198) TCGA-K4-A4AC-01 10 70360764 70360764 G C TET1 Missense_Mutation p.Q647H 0.14 deleterious(0) possibly_damaging(0.88) TCGA-K4-A4AC-01 10 75029411 75029411 A G TTC18 Silent p.N1066N 0.17 TCGA-K4-A4AC-01 10 85909866 85909866 C A GHITM Silent p.I216I 0.12 TCGA-K4-A4AC-01 10 90770539 90770539 C G FAS Missense_Mutation p.L179V 0.24 tolerated(0.45) possibly_damaging(0.888) TCGA-K4-A4AC-01 10 95372807 95372807 G A PDE6C Missense_Mutation p.E109K 0.15 deleterious(0.03) probably_damaging(1) TCGA-K4-A4AC-01 11 116707864 116707864 G A APOA1 Missense_Mutation p.A18V 0.16 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 11 118374212 118374212 G T KMT2A Missense_Mutation p.E2535D 0.11 benign(0.115) TCGA-K4-A4AC-01 11 56409301 56409301 G C OR5AP2 Missense_Mutation p.I205M 0.08 tolerated(0.22) benign(0.363) TCGA-K4-A4AC-01 11 59997456 59997456 C G MS4A4E Missense_Mutation p.D25H 0.43 tolerated_low_confidence(0.06) benign(0.002) TCGA-K4-A4AC-01 11 60704380 60704380 C G TMEM132A 3'UTR 0.26 TCGA-K4-A4AC-01 11 62159690 62159690 C T ASRGL1 Silent p.A287A 0.18 TCGA-K4-A4AC-01 11 62297677 62297677 C G AHNAK Silent p.V1404V 0.22 TCGA-K4-A4AC-01 11 64126887 64126887 G C RPS6KA4 Missense_Mutation p.E31D 0.08 tolerated(0.27) benign(0) TCGA-K4-A4AC-01 11 64884261 64884261 C T ZNHIT2 Missense_Mutation p.E289K 0.08 tolerated(0.14) probably_damaging(0.972) TCGA-K4-A4AC-01 11 65266456 65266456 G A MALAT1 RNA 0.20 TCGA-K4-A4AC-01 11 65267685 65267685 G T MALAT1 RNA 0.25 TCGA-K4-A4AC-01 11 65793340 65793340 C T CATSPER1 Missense_Mutation p.E171K 0.28 tolerated(0.18) benign(0.003) TCGA-K4-A4AC-01 11 68835069 68835069 C T TPCN2 Silent p.P275P 0.13 TCGA-K4-A4AC-01 11 76823766 76823766 C G CAPN5 Silent p.V143V 0.25 TCGA-K4-A4AC-01 11 9430080 9430080 G A IPO7 Missense_Mutation p.E72K 0.44 tolerated(0.07) possibly_damaging(0.7) TCGA-K4-A4AC-01 11 9431515 9431515 G C IPO7 Missense_Mutation p.D121H 0.37 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 12 100451973 100451973 G C UHRF1BP1L Missense_Mutation p.Q1028E 0.18 tolerated(0.96) benign(0.071) TCGA-K4-A4AC-01 12 114823313 114823313 G A TBX5 Silent p.D241D 0.21 TCGA-K4-A4AC-01 12 122690862 122690862 C A B3GNT4 Intron 0.20 TCGA-K4-A4AC-01 12 20868203 20868203 T C SLCO1C1 Silent p.N220N 0.31 TCGA-K4-A4AC-01 12 22354791 22354791 G A ST8SIA1 Silent p.L256L 0.22 TCGA-K4-A4AC-01 12 2907923 2907923 G A FKBP4 Missense_Mutation p.G149R 0.18 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 12 38710702 38710702 C G ALG10B Missense_Mutation p.Q3E 0.14 tolerated_low_confidence(0.28) benign(0.001) TCGA-K4-A4AC-01 12 46125020 46125020 G T ARID2 Missense_Mutation p.W69C 0.19 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 12 54396375 54396375 C T HOXC9 Missense_Mutation p.R234W 0.10 deleterious(0) probably_damaging(0.996) TCGA-K4-A4AC-01 12 58009791 58009791 T C ARHGEF25 Missense_Mutation p.F510L 0.15 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 12 7528479 7528479 C A CD163L1 Nonsense_Mutation p.E835* 0.11 TCGA-K4-A4AC-01 12 75804223 75804223 G A GLIPR1L2 Missense_Mutation p.V82I 0.16 tolerated(0.19) possibly_damaging(0.844) TCGA-K4-A4AC-01 12 76425160 76425160 G T PHLDA1 Missense_Mutation p.P121Q 0.23 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-K4-A4AC-01 12 9265997 9265997 G C A2M Missense_Mutation p.L77V 0.27 tolerated(0.59) benign(0.003) TCGA-K4-A4AC-01 13 79940846 79940846 G A RBM26 Missense_Mutation p.L353F 0.31 tolerated(0.68) probably_damaging(0.964) TCGA-K4-A4AC-01 14 33004842 33004842 A G AKAP6 Missense_Mutation p.Y136C 0.34 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 15 43621620 43621620 C T LCMT2 Silent p.K356K 0.11 TCGA-K4-A4AC-01 15 43677998 43677998 G C TUBGCP4 Missense_Mutation p.E245Q 0.16 tolerated(0.19) possibly_damaging(0.683) TCGA-K4-A4AC-01 15 44038746 44038746 C T PDIA3 Silent p.L3L 0.17 TCGA-K4-A4AC-01 15 48056191 48056191 C A SEMA6D Missense_Mutation p.Q298K 0.10 deleterious(0) probably_damaging(0.996) TCGA-K4-A4AC-01 15 75189514 75189514 C G MPI Nonsense_Mutation p.S336* 0.10 TCGA-K4-A4AC-01 15 78393264 78393264 C T SH2D7 Silent p.L223L 0.13 TCGA-K4-A4AC-01 16 14041695 14041695 A G ERCC4 Missense_Mutation p.M748V 0.23 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 16 14334492 14334492 A T MKL2 Intron 0.21 TCGA-K4-A4AC-01 16 28878700 28878700 C G SH2B1 Missense_Mutation p.R330G 0.15 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 16 30490651 30490651 G A ITGAL Splice_Site p.X149_splice 0.14 TCGA-K4-A4AC-01 16 30750483 30750483 G T SRCAP Missense_Mutation p.R3041L 0.18 unknown(0) TCGA-K4-A4AC-01 16 31008336 31008336 A G STX1B Silent p.Y133Y 0.22 TCGA-K4-A4AC-01 16 3406173 3406173 T C OR2C1 Missense_Mutation p.V78A 0.09 tolerated(0.11) benign(0.242) TCGA-K4-A4AC-01 16 58528893 58528893 C A NDRG4 Missense_Mutation p.A53D 0.16 tolerated(0.23) benign(0.001) TCGA-K4-A4AC-01 16 67029590 67029590 C T CES4A Nonsense_Mutation p.Q40* 0.29 TCGA-K4-A4AC-01 16 83065765 83065765 C T CDH13 Missense_Mutation p.A150V 0.14 tolerated(0.13) benign(0.346) TCGA-K4-A4AC-01 16 89788997 89788997 G A ZNF276 Silent p.S88S 0.23 TCGA-K4-A4AC-01 17 10359805 10359805 G A MYH4 Silent p.F655F 0.21 TCGA-K4-A4AC-01 17 30643287 30643287 C G RHBDL3 Missense_Mutation p.R307G 0.08 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 17 37627570 37627570 G C CDK12 Missense_Mutation p.L495F 0.13 possibly_damaging(0.879) TCGA-K4-A4AC-01 17 40125722 40125723 - A CNP Frame_Shift_Ins p.E350Rfs*60 0.17 TCGA-K4-A4AC-01 17 64881347 64881347 C T CACNG5 Missense_Mutation p.S273L 0.18 deleterious_low_confidence(0) possibly_damaging(0.511) TCGA-K4-A4AC-01 17 68171413 68171413 A G KCNJ2 Missense_Mutation p.D78G 0.17 deleterious(0) probably_damaging(0.999) TCGA-K4-A4AC-01 17 7010447 7010447 C G ASGR2 Missense_Mutation p.V179L 0.13 tolerated(0.36) benign(0.094) TCGA-K4-A4AC-01 17 72851013 72851014 - T GRIN2C Frame_Shift_Ins p.N73Kfs*24 0.13 TCGA-K4-A4AC-01 17 7312031 7312031 G A NLGN2 Missense_Mutation p.G153S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A4AC-01 17 7346325 7346325 G A FGF11 Intron 0.38 TCGA-K4-A4AC-01 17 73625916 73625916 C T RECQL5 Missense_Mutation p.D607N 0.13 deleterious(0) benign(0.002) TCGA-K4-A4AC-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.36 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 17 7801368 7801368 G A CHD3 Missense_Mutation p.E726K 0.17 possibly_damaging(0.621) TCGA-K4-A4AC-01 17 79826712 79826712 C A ARHGDIA 3'UTR 0.31 TCGA-K4-A4AC-01 17 80011196 80011196 C T GPS1 Missense_Mutation p.P67L 0.11 tolerated(0.38) benign(0.002) TCGA-K4-A4AC-01 18 28602454 28602454 C - DSC3 Frame_Shift_Del p.V264Wfs*17 0.12 TCGA-K4-A4AC-01 18 61264523 61264523 C T SERPINB13 Missense_Mutation p.H368Y 0.10 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 19 10225763 10225763 C T P2RY11 3'UTR 0.11 TCGA-K4-A4AC-01 19 10945645 10945645 C T TMED1 Missense_Mutation p.E144K 0.10 tolerated(0.21) benign(0.166) TCGA-K4-A4AC-01 19 1119621 1119621 C T SBNO2 Splice_Site p.X423_splice 0.25 TCGA-K4-A4AC-01 19 15083521 15083521 T C SLC1A6 Missense_Mutation p.I68V 0.23 tolerated(0.37) benign(0.062) TCGA-K4-A4AC-01 19 17212870 17212870 G C MYO9B Missense_Mutation p.D115H 0.14 deleterious(0) probably_damaging(0.977) TCGA-K4-A4AC-01 19 37210333 37210333 A G ZNF567 Missense_Mutation p.N205S 0.22 tolerated(0.46) benign(0.004) TCGA-K4-A4AC-01 19 39127576 39127576 A G EIF3K 3'UTR 0.37 TCGA-K4-A4AC-01 19 40318956 40318956 G A DYRK1B Missense_Mutation p.S263F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A4AC-01 19 42471441 42471441 G A ATP1A3 Silent p.Y1004Y 0.25 TCGA-K4-A4AC-01 19 44791824 44791824 G A ZNF235 Silent p.A588A 0.09 TCGA-K4-A4AC-01 19 45476396 45476396 C G CLPTM1 Missense_Mutation p.Q80E 0.11 tolerated(0.76) benign(0.035) TCGA-K4-A4AC-01 19 53268952 53268952 C T ZNF600 Missense_Mutation p.G686E 0.38 tolerated(0.21) benign(0.008) TCGA-K4-A4AC-01 19 55106589 55106589 C T LILRA1 Missense_Mutation p.S128L 0.17 tolerated(0.07) possibly_damaging(0.83) TCGA-K4-A4AC-01 19 55800876 55800876 G A BRSK1 Missense_Mutation p.G116S 0.07 deleterious(0) probably_damaging(0.95) TCGA-K4-A4AC-01 19 57326047 57326047 G A PEG3 Nonsense_Mutation p.Q1255* 0.18 TCGA-K4-A4AC-01 19 856106 856106 C G ELANE Missense_Mutation p.S249C 0.15 tolerated(0.06) possibly_damaging(0.662) TCGA-K4-A4AC-01 19 9070692 9070692 G T MUC16 Nonsense_Mutation p.S5585* 0.12 TCGA-K4-A4AC-01 19 9577886 9577886 T A ZNF560 Missense_Mutation p.K579N 0.15 deleterious(0) probably_damaging(0.945) TCGA-K4-A4AC-01 1 100376372 100376372 G T AGL Missense_Mutation p.A1269S 0.16 deleterious(0.03) probably_damaging(0.913) TCGA-K4-A4AC-01 1 109241791 109241793 AGG - PRPF38B In_Frame_Del p.R265del 0.14 TCGA-K4-A4AC-01 1 110085875 110085875 C G GPR61 Silent p.V77V 0.07 TCGA-K4-A4AC-01 1 110086039 110086039 C T GPR61 Missense_Mutation p.S132L 0.10 deleterious(0) possibly_damaging(0.835) TCGA-K4-A4AC-01 1 11136911 11136911 G A EXOSC10 Silent p.I658I 0.23 TCGA-K4-A4AC-01 1 11137483 11137483 G A EXOSC10 Silent p.L606L 0.17 TCGA-K4-A4AC-01 1 11288890 11288890 C G MTOR Silent p.L955L 0.21 TCGA-K4-A4AC-01 1 158435384 158435384 G T OR10K1 Missense_Mutation p.E11D 0.23 tolerated(0.05) benign(0.053) TCGA-K4-A4AC-01 1 161197761 161197761 G A TOMM40L Missense_Mutation p.D156N 0.08 tolerated(0.1) probably_damaging(0.985) TCGA-K4-A4AC-01 1 16736407 16736407 C T SPATA21 Silent p.V92V 0.25 TCGA-K4-A4AC-01 1 19201943 19201943 C G ALDH4A1 Missense_Mutation p.E465Q 0.24 tolerated(0.05) possibly_damaging(0.794) TCGA-K4-A4AC-01 1 201816464 201816464 G A IPO9 Missense_Mutation p.R74H 0.24 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 1 215777626 215777626 G C KCTD3 Missense_Mutation p.E431Q 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-K4-A4AC-01 1 235506024 235506024 G T GGPS1 Silent p.G280G 0.29 TCGA-K4-A4AC-01 1 24426229 24426230 AA - MYOM3 Frame_Shift_Del p.F199Sfs*19 0.15 TCGA-K4-A4AC-01 1 247902073 247902073 C G OR14K1 Missense_Mutation p.L53V 0.27 deleterious(0) probably_damaging(0.987) TCGA-K4-A4AC-01 1 26149617 26149617 G A MTFR1L Missense_Mutation p.V8M 0.14 tolerated(0.1) benign(0.188) TCGA-K4-A4AC-01 1 26517165 26517165 C T CATSPER4 Missense_Mutation p.T16I 0.40 tolerated_low_confidence(0.09) benign(0.005) TCGA-K4-A4AC-01 1 39987099 39987099 G T BMP8A Missense_Mutation p.R242L 0.16 tolerated(0.22) possibly_damaging(0.852) TCGA-K4-A4AC-01 1 47603337 47603337 C T CYP4A22 Silent p.F60F 0.45 TCGA-K4-A4AC-01 1 48701540 48701540 G A SLC5A9 Missense_Mutation p.M452I 0.11 deleterious(0.04) probably_damaging(0.98) TCGA-K4-A4AC-01 1 54518790 54518790 C T TMEM59 Missense_Mutation p.M24I 0.11 tolerated(0.21) benign(0) TCGA-K4-A4AC-01 1 9795075 9795075 C G CLSTN1 Missense_Mutation p.E681Q 0.17 deleterious(0.01) probably_damaging(0.916) TCGA-K4-A4AC-01 20 35154443 35154443 G T DLGAP4 Intron 0.38 TCGA-K4-A4AC-01 20 45131371 45131371 G C ZNF334 Missense_Mutation p.Q203E 0.12 tolerated(0.13) benign(0.097) TCGA-K4-A4AC-01 20 45920581 45920581 C A ZMYND8 Nonsense_Mutation p.E207* 0.21 TCGA-K4-A4AC-01 20 57581450 57581450 G A CTSZ Silent p.S78S 0.20 TCGA-K4-A4AC-01 20 61473415 61473415 C T TCFL5 Missense_Mutation p.R472Q 0.08 tolerated(0.07) probably_damaging(0.99) TCGA-K4-A4AC-01 20 62187062 62187062 G A C20orf195 Missense_Mutation p.G16S 0.09 tolerated(0.22) benign(0.165) TCGA-K4-A4AC-01 21 41710047 41710047 G A DSCAM Silent p.S588S 0.09 TCGA-K4-A4AC-01 22 21383721 21383721 G A SLC7A4 Missense_Mutation p.P546S 0.12 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 22 21384564 21384564 G A SLC7A4 Silent p.F353F 0.15 TCGA-K4-A4AC-01 22 39917511 39917511 G C ATF4 Missense_Mutation p.D21H 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-K4-A4AC-01 22 41734347 41734347 G C ZC3H7B Missense_Mutation p.D205H 0.25 deleterious(0.03) possibly_damaging(0.599) TCGA-K4-A4AC-01 22 41735862 41735862 G A ZC3H7B Missense_Mutation p.E287K 0.26 tolerated(0.45) benign(0.124) TCGA-K4-A4AC-01 22 41739457 41739457 G A ZC3H7B Missense_Mutation p.E446K 0.27 deleterious(0.04) possibly_damaging(0.642) TCGA-K4-A4AC-01 22 46098718 46098718 C G ATXN10 Nonsense_Mutation p.S213* 0.28 TCGA-K4-A4AC-01 22 46114359 46114359 G A ATXN10 Silent p.L238L 0.07 TCGA-K4-A4AC-01 22 51020270 51020270 C T CHKB Missense_Mutation p.E119K 0.12 deleterious(0) probably_damaging(0.998) TCGA-K4-A4AC-01 2 121106682 121106682 C T INHBB Silent p.L152L 0.14 TCGA-K4-A4AC-01 2 138414453 138414453 A T THSD7B Missense_Mutation p.Q1401L 0.10 deleterious(0) unknown(0) TCGA-K4-A4AC-01 2 1457485 1457485 G A TPO Missense_Mutation p.A168T 0.20 deleterious(0.03) probably_damaging(0.994) TCGA-K4-A4AC-01 2 168873576 168873576 C T STK39 Missense_Mutation p.R469Q 0.21 deleterious(0.02) probably_damaging(0.909) TCGA-K4-A4AC-01 2 179485343 179485343 A T TTN Missense_Mutation p.L15302H 0.24 TCGA-K4-A4AC-01 2 203630478 203630478 T C FAM117B Silent p.A587A 0.17 TCGA-K4-A4AC-01 2 20647449 20647449 C A RHOB Missense_Mutation p.P75T 0.11 deleterious(0) possibly_damaging(0.558) TCGA-K4-A4AC-01 2 213914454 213914454 T C IKZF2 Missense_Mutation p.H186R 0.10 deleterious(0) probably_damaging(0.997) TCGA-K4-A4AC-01 2 220476408 220476408 G C STK11IP Silent p.R740R 0.27 TCGA-K4-A4AC-01 2 241831177 241831177 G A C2orf54 Missense_Mutation p.S173L 0.14 deleterious(0.05) benign(0.07) TCGA-K4-A4AC-01 2 27481113 27481113 C A SLC30A3 Missense_Mutation p.G114C 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-K4-A4AC-01 2 55806843 55806843 G C SMEK2 Silent p.T480T 0.18 TCGA-K4-A4AC-01 2 80529681 80529681 C T LRRTM1 Missense_Mutation p.A422T 0.27 tolerated(0.44) benign(0.002) TCGA-K4-A4AC-01 3 122418709 122418709 A T PARP14 Silent p.A436A 0.14 TCGA-K4-A4AC-01 3 124196175 124196175 C T KALRN Silent p.F1393F 0.21 TCGA-K4-A4AC-01 3 181430438 181430438 T G SOX2 Missense_Mutation p.L97R 0.14 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 3 190326899 190326899 C T IL1RAP Nonsense_Mutation p.Q156* 0.13 TCGA-K4-A4AC-01 3 193081968 193081968 G A ATP13A5 Silent p.P55P 0.29 TCGA-K4-A4AC-01 3 39141917 39141917 C T GORASP1 Missense_Mutation p.G215D 0.39 tolerated(0.13) benign(0.003) TCGA-K4-A4AC-01 3 4722271 4722271 C T ITPR1 Missense_Mutation p.S986F 0.08 deleterious(0) probably_damaging(0.996) TCGA-K4-A4AC-01 3 4722272 4722272 C T ITPR1 Silent p.S986S 0.09 TCGA-K4-A4AC-01 4 118005529 118005529 A G TRAM1L1 Missense_Mutation p.S341P 0.10 tolerated(0.4) benign(0.002) TCGA-K4-A4AC-01 4 123095791 123095791 G T KIAA1109 Nonsense_Mutation p.E93* 0.10 TCGA-K4-A4AC-01 4 159091780 159091780 C T FAM198B Missense_Mutation p.E250K 0.28 tolerated(0.19) benign(0.005) TCGA-K4-A4AC-01 4 47517632 47517632 C T ATP10D Missense_Mutation p.R144W 0.11 deleterious(0) probably_damaging(0.993) TCGA-K4-A4AC-01 4 83978134 83978134 C T COPS4 Silent p.L156L 0.15 TCGA-K4-A4AC-01 4 85556434 85556434 C T CDS1 Missense_Mutation p.S247L 0.27 tolerated(0.07) possibly_damaging(0.631) TCGA-K4-A4AC-01 5 137665260 137665260 C G CDC25C Missense_Mutation p.A91P 0.21 tolerated(0.56) benign(0.015) TCGA-K4-A4AC-01 5 1394820 1394820 G A SLC6A3 3'UTR 0.32 TCGA-K4-A4AC-01 5 140182066 140182066 G A PCDHA3 Silent p.R428R 0.20 TCGA-K4-A4AC-01 5 147928314 147928314 C T HTR4 Silent p.E90E 0.33 TCGA-K4-A4AC-01 5 147928327 147928327 C A HTR4 Missense_Mutation p.W86L 0.22 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 5 150028206 150028206 C T SYNPO Silent p.L367L 0.21 TCGA-K4-A4AC-01 5 180055979 180055979 C T FLT4 Missense_Mutation p.E336K 0.27 tolerated(0.19) benign(0.194) TCGA-K4-A4AC-01 5 180377222 180377222 G A BTNL8 Missense_Mutation p.R394H 0.36 tolerated(1) benign(0.002) TCGA-K4-A4AC-01 6 126320607 126320607 C T TRMT11 Missense_Mutation p.A176V 0.27 tolerated(0.07) benign(0.059) TCGA-K4-A4AC-01 6 30043546 30043546 C G RNF39 Silent p.T7T 0.13 TCGA-K4-A4AC-01 6 31747546 31747546 C T VARS Missense_Mutation p.E1043K 0.23 tolerated(0.9) benign(0.005) TCGA-K4-A4AC-01 6 33644592 33644592 C T ITPR3 Silent p.I1110I 0.15 TCGA-K4-A4AC-01 7 150171112 150171112 G A GIMAP8 Missense_Mutation p.R232K 0.08 tolerated(0.59) benign(0.012) TCGA-K4-A4AC-01 7 151042520 151042520 G C NUB1 Missense_Mutation p.D53H 0.29 deleterious(0.04) possibly_damaging(0.734) TCGA-K4-A4AC-01 7 73604598 73604598 C T EIF4H Missense_Mutation p.S144F 0.24 deleterious(0.05) benign(0.087) TCGA-K4-A4AC-01 7 7613733 7613733 G C MIOS Missense_Mutation p.M433I 0.15 tolerated(1) benign(0.001) TCGA-K4-A4AC-01 8 100493888 100493888 G A VPS13B Missense_Mutation p.R1243K 0.75 tolerated(0.36) benign(0.153) TCGA-K4-A4AC-01 8 10480436 10480436 G A RP1L1 Silent p.A92A 0.54 TCGA-K4-A4AC-01 8 146279502 146279502 C G C8orf33 Missense_Mutation p.L217V 0.11 tolerated(0.39) benign(0.023) TCGA-K4-A4AC-01 8 1876682 1876682 A G ARHGEF10 Silent p.E929E 0.25 TCGA-K4-A4AC-01 8 30021636 30021636 T A DCTN6 Silent p.I11I 0.50 TCGA-K4-A4AC-01 8 61736594 61736594 G A CHD7 Intron 0.10 TCGA-K4-A4AC-01 8 67974120 67974120 C A COPS5 Nonsense_Mutation p.E38* 0.08 TCGA-K4-A4AC-01 9 121929760 121929760 G A BRINP1 Nonsense_Mutation p.R630* 0.10 TCGA-K4-A4AC-01 9 131702707 131702707 G A PHYHD1 Silent p.A165A 0.06 TCGA-K4-A4AC-01 9 138556057 138556057 G A LCN9 Missense_Mutation p.R49Q 0.43 tolerated(0.06) benign(0.221) TCGA-K4-A4AC-01 9 139908391 139908391 C T ABCA2 Missense_Mutation p.R1447H 0.32 deleterious(0) probably_damaging(1) TCGA-K4-A4AC-01 9 35092000 35092000 C T PIGO Silent p.L628L 0.37 TCGA-K4-A4AC-01 9 74863296 74863296 G A GDA Intron 0.55 TCGA-K4-A4AC-01 9 94495419 94495419 C T ROR2 Missense_Mutation p.E308K 0.27 tolerated(0.26) benign(0.02) TCGA-K4-A4AC-01 X 100240712 100240712 G C ARL13A Missense_Mutation p.D63H 0.24 deleterious(0.03) benign(0.429) TCGA-K4-A4AC-01 X 100240721 100240721 G A ARL13A Missense_Mutation p.E66K 0.24 deleterious(0.03) benign(0.104) TCGA-K4-A4AC-01 X 12994980 12994980 C T TMSB4X 3'UTR 0.12 TCGA-K4-A4AC-01 X 21863334 21863335 - T MBTPS2 Frame_Shift_Ins p.L93Sfs*16 0.31 TCGA-K4-A4AC-01 X 27766599 27766599 G A DCAF8L2 Silent p.A529A 0.27 TCGA-K4-A4AC-01 X 49086926 49086926 C T CACNA1F Intron 0.24 TCGA-K4-A54R-01 10 105362583 105362583 C T SH3PXD2A Missense_Mutation p.E770K 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A54R-01 10 105992001 105992001 C T WDR96 Missense_Mutation p.A2T 0.20 tolerated_low_confidence(0.05) benign(0.392) TCGA-K4-A54R-01 10 11060055 11060055 G A CELF2 Translation_Start_Site p.M1? 0.18 tolerated_low_confidence(0.2) benign(0) TCGA-K4-A54R-01 10 11060123 11060123 G A CELF2 Missense_Mutation p.R24K 0.18 tolerated(0.77) benign(0.012) TCGA-K4-A54R-01 10 122660558 122660558 G A WDR11 Missense_Mutation p.E879K 0.48 tolerated(0.32) benign(0.05) TCGA-K4-A54R-01 10 13167528 13167528 C G OPTN Nonsense_Mutation p.S370* 0.21 TCGA-K4-A54R-01 10 135438791 135438791 G A FRG2B Silent p.L217L 0.48 TCGA-K4-A54R-01 10 15729981 15729981 G A ITGA8 Nonsense_Mutation p.Q134* 0.19 TCGA-K4-A54R-01 10 20534409 20534409 C G PLXDC2 Nonsense_Mutation p.S483* 0.20 TCGA-K4-A54R-01 10 21804375 21804375 G A SKIDA1 Nonsense_Mutation p.Q793* 0.25 TCGA-K4-A54R-01 10 21804495 21804495 G C SKIDA1 Missense_Mutation p.Q753E 0.26 tolerated(0.1) unknown(0) TCGA-K4-A54R-01 10 25464574 25464574 C T GPR158 Silent p.A75A 0.22 TCGA-K4-A54R-01 10 26313003 26313003 G A MYO3A Missense_Mutation p.D262N 0.21 deleterious(0.04) possibly_damaging(0.644) TCGA-K4-A54R-01 10 27294537 27294537 C T ANKRD26 Silent p.K1705K 0.15 TCGA-K4-A54R-01 10 28884718 28884718 C G WAC Missense_Mutation p.Q223E 0.29 tolerated(0.15) benign(0.294) TCGA-K4-A54R-01 10 294307 294307 C G ZMYND11 Missense_Mutation p.S420C 0.45 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 10 30315698 30315698 C G KIAA1462 Missense_Mutation p.E1127Q 0.25 tolerated(0.15) possibly_damaging(0.691) TCGA-K4-A54R-01 10 38121056 38121056 T A ZNF248 Missense_Mutation p.E409D 0.28 deleterious(0) possibly_damaging(0.896) TCGA-K4-A54R-01 10 3827248 3827248 G A KLF6 5'UTR 0.15 TCGA-K4-A54R-01 10 46961811 46961811 C G SYT15 3'Flank 0.14 TCGA-K4-A54R-01 10 48390440 48390440 C T RBP3 Missense_Mutation p.M146I 0.46 deleterious(0) benign(0.02) TCGA-K4-A54R-01 10 54041916 54041916 G T PRKG1 Missense_Mutation p.D517Y 0.28 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 10 63810739 63810739 G A ARID5B Missense_Mutation p.D276N 0.51 tolerated(0.05) probably_damaging(0.981) TCGA-K4-A54R-01 10 64974120 64974120 A G JMJD1C Silent p.L603L 0.46 TCGA-K4-A54R-01 10 64974125 64974125 G A JMJD1C Missense_Mutation p.S601F 0.47 tolerated_low_confidence(0.28) benign(0.028) TCGA-K4-A54R-01 10 70549669 70549669 G C CCAR1 Missense_Mutation p.K1130N 0.61 tolerated_low_confidence(0.21) unknown(0) TCGA-K4-A54R-01 10 71880952 71880952 G A AIFM2 Missense_Mutation p.H104Y 0.65 tolerated(0.11) benign(0.024) TCGA-K4-A54R-01 10 74828691 74828691 C G P4HA1 Missense_Mutation p.D126H 0.65 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 10 88232508 88232508 G C WAPAL Nonsense_Mutation p.S585* 0.33 TCGA-K4-A54R-01 10 89690808 89690808 C T PTEN Missense_Mutation p.A72V 0.36 deleterious(0.03) benign(0.262) TCGA-K4-A54R-01 10 95658335 95658335 G A SLC35G1 Silent p.K62K 0.46 TCGA-K4-A54R-01 10 97916862 97916862 C G ZNF518A RNA 0.47 TCGA-K4-A54R-01 10 98312796 98312796 G A TM9SF3 Silent p.F227F 0.22 TCGA-K4-A54R-01 10 99350129 99350129 G A C10orf62 Missense_Mutation p.E159K 0.29 deleterious(0) possibly_damaging(0.791) TCGA-K4-A54R-01 10 99517059 99517059 G A ZFYVE27 Silent p.L365L 0.50 TCGA-K4-A54R-01 11 10523102 10523102 G A AMPD3 Missense_Mutation p.A612T 0.31 deleterious(0.03) possibly_damaging(0.771) TCGA-K4-A54R-01 11 108385098 108385098 G C EXPH5 Missense_Mutation p.S379C 0.25 deleterious(0.04) benign(0.192) TCGA-K4-A54R-01 11 117985576 117985576 G A TMPRSS4 Missense_Mutation p.D315N 0.36 tolerated(0.13) benign(0.232) TCGA-K4-A54R-01 11 118868889 118868889 G A CCDC84 5'UTR 0.36 TCGA-K4-A54R-01 11 118869200 118869200 G A CCDC84 Missense_Mutation p.E61K 0.25 tolerated(0.29) possibly_damaging(0.638) TCGA-K4-A54R-01 11 120996548 120996548 C A TECTA Missense_Mutation p.P581T 0.29 tolerated(1) benign(0.012) TCGA-K4-A54R-01 11 12262651 12262651 C A MICAL2 Missense_Mutation p.S760Y 0.29 tolerated(0.1) benign(0.309) TCGA-K4-A54R-01 11 124412894 124412894 G A OR8B12 Silent p.L219L 0.39 TCGA-K4-A54R-01 11 124618415 124618415 C G VSIG2 Missense_Mutation p.R241P 0.16 tolerated(0.08) probably_damaging(0.943) TCGA-K4-A54R-01 11 124749718 124749718 G C ROBO3 Missense_Mutation p.E1278Q 0.31 tolerated_low_confidence(0.14) benign(0.01) TCGA-K4-A54R-01 11 129725644 129725644 G C TMEM45B Missense_Mutation p.D143H 0.32 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 11 13398097 13398097 G C ARNTL Intron 0.32 TCGA-K4-A54R-01 11 15197416 15197416 C A INSC Silent p.L109L 0.37 TCGA-K4-A54R-01 11 17565939 17565939 G A USH1C 5'Flank 0.50 TCGA-K4-A54R-01 11 3150277 3150277 G A OSBPL5 Silent p.L34L 0.39 TCGA-K4-A54R-01 11 34167703 34167703 G A NAT10 Silent p.K1014K 0.24 TCGA-K4-A54R-01 11 36297690 36297690 C A COMMD9 Missense_Mutation p.M151I 0.40 deleterious(0.02) benign(0.048) TCGA-K4-A54R-01 11 43428917 43428917 C G TTC17 Missense_Mutation p.I618M 0.31 tolerated(0.22) benign(0.092) TCGA-K4-A54R-01 11 44072119 44072119 G A ACCSL Missense_Mutation p.M194I 0.28 deleterious(0) possibly_damaging(0.673) TCGA-K4-A54R-01 11 44219565 44219565 G A EXT2 Missense_Mutation p.E531K 0.16 tolerated(0.5) benign(0.219) TCGA-K4-A54R-01 11 4624510 4624510 C T TRIM68 Missense_Mutation p.E163K 0.31 tolerated(0.37) possibly_damaging(0.896) TCGA-K4-A54R-01 11 46702860 46702860 G A ARHGAP1 Silent p.L173L 0.28 TCGA-K4-A54R-01 11 46783615 46783615 C T CKAP5 Missense_Mutation p.A1386T 0.23 deleterious(0.03) probably_damaging(0.971) TCGA-K4-A54R-01 11 47304375 47304375 C T MADD Missense_Mutation p.P573S 0.26 deleterious(0) probably_damaging(0.995) TCGA-K4-A54R-01 11 47776178 47776178 C T FNBP4 Missense_Mutation p.D118N 0.31 deleterious(0) possibly_damaging(0.51) TCGA-K4-A54R-01 11 5080462 5080462 G A OR52E2 Silent p.L132L 0.38 TCGA-K4-A54R-01 11 55563608 55563608 G A OR5D14 Missense_Mutation p.D193N 0.26 deleterious(0.03) benign(0.434) TCGA-K4-A54R-01 11 5602449 5602449 G C OR52B6 Missense_Mutation p.D115H 0.25 tolerated(0.34) possibly_damaging(0.671) TCGA-K4-A54R-01 11 56257915 56257915 G A OR5M8 Missense_Mutation p.S311F 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-K4-A54R-01 11 56949375 56949375 G A LRRC55 Missense_Mutation p.R3K 0.35 tolerated_low_confidence(0.17) benign(0.002) TCGA-K4-A54R-01 11 57193662 57193662 G C SLC43A3 5'UTR 0.27 TCGA-K4-A54R-01 11 57509671 57509671 G C C11orf31 Missense_Mutation p.L117F 0.38 deleterious(0.04) possibly_damaging(0.477) TCGA-K4-A54R-01 11 58919953 58919953 G C FAM111A Missense_Mutation p.R271T 0.24 tolerated(0.22) benign(0.018) TCGA-K4-A54R-01 11 59132446 59132446 C T OR5AN1 Missense_Mutation p.S172F 0.36 deleterious(0) benign(0.285) TCGA-K4-A54R-01 11 60637886 60637887 - T ZP1 Frame_Shift_Ins p.Q256Sfs*8 0.27 TCGA-K4-A54R-01 11 60696153 60696153 C T TMEM132A Missense_Mutation p.S196L 0.39 deleterious(0) possibly_damaging(0.53) TCGA-K4-A54R-01 11 61205110 61205110 C G SDHAF2 Nonsense_Mutation p.S17* 0.27 TCGA-K4-A54R-01 11 61645631 61645631 G A FADS3 Silent p.F268F 0.23 TCGA-K4-A54R-01 11 62286151 62286151 C T AHNAK Silent p.V5246V 0.33 TCGA-K4-A54R-01 11 62292581 62292581 G T AHNAK Missense_Mutation p.P3103H 0.29 probably_damaging(0.993) TCGA-K4-A54R-01 11 62294313 62294313 C T AHNAK Missense_Mutation p.E2526K 0.25 possibly_damaging(0.486) TCGA-K4-A54R-01 11 62295616 62295616 C G AHNAK Silent p.V2091V 0.32 TCGA-K4-A54R-01 11 62297076 62297076 C A AHNAK Nonsense_Mutation p.E1605* 0.28 TCGA-K4-A54R-01 11 62414080 62414080 G A GANAB 5'UTR 0.31 TCGA-K4-A54R-01 11 62415212 62415212 G T INTS5 Silent p.L780L 0.24 TCGA-K4-A54R-01 11 62458267 62458267 G A BSCL2 Missense_Mutation p.S382L 0.43 tolerated(0.15) benign(0.059) TCGA-K4-A54R-01 11 62496386 62496386 G A TTC9C Silent p.G22G 0.26 TCGA-K4-A54R-01 11 62648798 62648798 C G SLC3A2 Silent p.V203V 0.33 TCGA-K4-A54R-01 11 62747216 62747216 C T SLC22A6 Silent p.V414V 0.36 TCGA-K4-A54R-01 11 63137562 63137562 G A SLC22A9 Missense_Mutation p.D12N 0.33 tolerated(0.06) benign(0.01) TCGA-K4-A54R-01 11 63276372 63276372 G A LGALS12 Missense_Mutation p.R117H 0.32 tolerated(0.18) benign(0.031) TCGA-K4-A54R-01 11 63357635 63357635 C T PLA2G16 Silent p.L108L 0.21 TCGA-K4-A54R-01 11 6412143 6412143 G A SMPD1 Silent p.L105L 0.32 TCGA-K4-A54R-01 11 64507207 64507207 G A RASGRP2 Silent p.L199L 0.31 TCGA-K4-A54R-01 11 6459641 6459641 T - HPX Frame_Shift_Del p.A146Lfs*32 0.21 TCGA-K4-A54R-01 11 65269598 65269598 G C MALAT1 RNA 0.15 TCGA-K4-A54R-01 11 65270981 65270981 G A MALAT1 RNA 0.17 TCGA-K4-A54R-01 11 65270990 65270990 G T MALAT1 RNA 0.16 TCGA-K4-A54R-01 11 65545714 65545714 G T AP5B1 Silent p.L750L 0.28 TCGA-K4-A54R-01 11 66488626 66488626 G A SPTBN2 Missense_Mutation p.P29L 0.32 tolerated(0.11) benign(0.007) TCGA-K4-A54R-01 11 67052579 67052579 G A ADRBK1 Missense_Mutation p.V609M 0.28 deleterious(0.02) benign(0.284) TCGA-K4-A54R-01 11 67410275 67410275 C T ACY3 Missense_Mutation p.A294T 0.25 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 11 67938521 67938521 C T SUV420H1 Missense_Mutation p.G313E 0.43 deleterious(0) probably_damaging(0.966) TCGA-K4-A54R-01 11 68506253 68506253 C G MTL5 Missense_Mutation p.E278Q 0.25 tolerated(0.08) benign(0.354) TCGA-K4-A54R-01 11 6891376 6891376 C G OR10A2 Missense_Mutation p.L131V 0.24 deleterious(0.01) probably_damaging(0.936) TCGA-K4-A54R-01 11 6891480 6891480 C A OR10A2 Missense_Mutation p.F165L 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-K4-A54R-01 11 69482676 69482676 C T ORAOV1 Missense_Mutation p.G111E 0.45 deleterious(0) possibly_damaging(0.675) TCGA-K4-A54R-01 11 70263227 70263227 G A CTTN Missense_Mutation p.R189K 0.38 tolerated(1) benign(0.01) TCGA-K4-A54R-01 11 72533553 72533553 G T ATG16L2 Silent p.L225L 0.32 TCGA-K4-A54R-01 11 73785502 73785502 C G C2CD3 Missense_Mutation p.E1583Q 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-K4-A54R-01 11 75316863 75316863 C T MAP6 Missense_Mutation p.E436K 0.29 deleterious(0) probably_damaging(0.985) TCGA-K4-A54R-01 11 76903269 76903269 C T MYO7A Silent p.L1366L 0.29 TCGA-K4-A54R-01 11 7949332 7949332 C T OR10A6 Missense_Mutation p.R293Q 0.20 deleterious(0) benign(0.119) TCGA-K4-A54R-01 11 8013370 8013370 C A EIF3F Nonsense_Mutation p.S136* 0.27 TCGA-K4-A54R-01 11 801976 801976 C G PIDD Missense_Mutation p.E431Q 0.25 tolerated(0.2) benign(0.098) TCGA-K4-A54R-01 11 803171 803171 C T PIDD Intron 0.47 TCGA-K4-A54R-01 11 82693412 82693412 C T RAB30 Missense_Mutation p.R136Q 0.36 tolerated(0.57) benign(0.023) TCGA-K4-A54R-01 11 82924037 82924037 C G ANKRD42 Intron 0.38 TCGA-K4-A54R-01 11 82935926 82935926 C T ANKRD42 Missense_Mutation p.H178Y 0.21 tolerated(0.2) benign(0.02) TCGA-K4-A54R-01 11 837264 837264 C T CD151 Silent p.L122L 0.21 TCGA-K4-A54R-01 11 83810076 83810076 C T DLG2 Silent p.L213L 0.38 TCGA-K4-A54R-01 11 85435720 85435720 C G SYTL2 Missense_Mutation p.E594Q 0.18 deleterious(0.03) benign(0.439) TCGA-K4-A54R-01 11 85693023 85693023 G A PICALM Missense_Mutation p.L514F 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-K4-A54R-01 11 94153247 94153247 C G MRE11A 3'UTR 0.38 TCGA-K4-A54R-01 11 9546908 9546908 C T ZNF143 Missense_Mutation p.S603F 0.21 deleterious(0) probably_damaging(0.959) TCGA-K4-A54R-01 12 10145781 10145781 C G CLEC1B Missense_Mutation p.E217D 0.23 deleterious(0.03) benign(0.277) TCGA-K4-A54R-01 12 101560429 101560429 C T SLC5A8 Missense_Mutation p.G457R 0.39 deleterious(0) probably_damaging(0.973) TCGA-K4-A54R-01 12 102159935 102159935 C T GNPTAB Missense_Mutation p.D516N 0.29 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 12 104378626 104378626 C G TDG Missense_Mutation p.Q298E 0.06 tolerated(0.17) benign(0.003) TCGA-K4-A54R-01 12 105425607 105425607 C T ALDH1L2 Missense_Mutation p.E784K 0.31 tolerated(0.2) benign(0.014) TCGA-K4-A54R-01 12 107360922 107360922 G C C12orf23 Missense_Mutation p.E10Q 0.31 tolerated_low_confidence(0.09) benign(0.007) TCGA-K4-A54R-01 12 108169067 108169067 G A ASCL4 Silent p.P25P 0.33 TCGA-K4-A54R-01 12 108589633 108589633 C T WSCD2 Silent p.F8F 0.25 TCGA-K4-A54R-01 12 109505358 109505358 G A USP30 Missense_Mutation p.E136K 0.38 deleterious(0.05) possibly_damaging(0.676) TCGA-K4-A54R-01 12 10959255 10959255 G A TAS2R8 Silent p.L109L 0.19 TCGA-K4-A54R-01 12 110834208 110834208 C G ANAPC7 Missense_Mutation p.D85H 0.31 deleterious(0) probably_damaging(0.928) TCGA-K4-A54R-01 12 120995397 120995397 G A RNF10 Silent p.T293T 0.27 TCGA-K4-A54R-01 12 122097134 122097134 C G MORN3 Missense_Mutation p.R89T 0.23 tolerated(0.09) benign(0.011) TCGA-K4-A54R-01 12 122413487 122413487 C G WDR66 Missense_Mutation p.Q968E 0.27 deleterious(0) probably_damaging(0.91) TCGA-K4-A54R-01 12 122966529 122966529 C T ZCCHC8 Missense_Mutation p.E280K 0.33 tolerated(0.05) benign(0.147) TCGA-K4-A54R-01 12 12302025 12302025 G C LRP6 Silent p.L1019L 0.29 TCGA-K4-A54R-01 12 123641434 123641434 C G MPHOSPH9 Missense_Mutation p.E1006Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 12 12419617 12419617 C G LRP6 Missense_Mutation p.R18T 0.25 tolerated(0.65) benign(0.001) TCGA-K4-A54R-01 12 124293420 124293420 G C DNAH10 Missense_Mutation p.E904Q 0.32 benign(0.059) TCGA-K4-A54R-01 12 124401033 124401033 C T DNAH10 Silent p.L3466L 0.24 TCGA-K4-A54R-01 12 125467119 125467119 C T DHX37 Silent p.E109E 0.29 TCGA-K4-A54R-01 12 125509812 125509812 A G BRI3BP Missense_Mutation p.T198A 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-K4-A54R-01 12 133257723 133257723 C T POLE Splice_Site p.X68_splice 0.35 TCGA-K4-A54R-01 12 133353621 133353621 C T GOLGA3 Missense_Mutation p.E1260K 0.20 tolerated(0.07) probably_damaging(0.963) TCGA-K4-A54R-01 12 133430034 133430034 G A CHFR Missense_Mutation p.S464F 0.24 deleterious(0) probably_damaging(0.986) TCGA-K4-A54R-01 12 14943536 14943536 G A WBP11 Missense_Mutation p.S388L 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-K4-A54R-01 12 14959138 14959138 G A SMCO3 Silent p.L159L 0.30 TCGA-K4-A54R-01 12 1940449 1940449 C A LRTM2 Nonsense_Mutation p.S139* 0.24 TCGA-K4-A54R-01 12 19440422 19440422 G C PLEKHA5 Missense_Mutation p.D599H 0.26 deleterious(0) possibly_damaging(0.786) TCGA-K4-A54R-01 12 21620514 21620514 G C PYROXD1 Missense_Mutation p.E406Q 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-K4-A54R-01 12 21960318 21960318 T A ABCC9 Missense_Mutation p.I1471F 0.25 tolerated(0.1) benign(0.154) TCGA-K4-A54R-01 12 22837883 22837883 G C ETNK1 Missense_Mutation p.E452Q 0.28 tolerated_low_confidence(0.1) benign(0.376) TCGA-K4-A54R-01 12 3039437 3039437 G C TULP3 Missense_Mutation p.D140H 0.24 deleterious(0) probably_damaging(0.992) TCGA-K4-A54R-01 12 30834721 30834721 G A IPO8 Silent p.I118I 0.26 TCGA-K4-A54R-01 12 32884287 32884287 C G DNM1L Intron 0.32 TCGA-K4-A54R-01 12 3659117 3659117 G A PRMT8 Missense_Mutation p.E93K 0.29 tolerated(0.11) benign(0.145) TCGA-K4-A54R-01 12 41303893 41303893 G C CNTN1 Missense_Mutation p.R27T 0.24 tolerated(0.58) benign(0.007) TCGA-K4-A54R-01 12 42749000 42749000 C G PPHLN1 Missense_Mutation p.S92C 0.31 deleterious(0.05) probably_damaging(0.976) TCGA-K4-A54R-01 12 4796191 4796191 G T NDUFA9 Nonsense_Mutation p.E351* 0.13 TCGA-K4-A54R-01 12 49219014 49219014 G A CACNB3 Silent p.L187L 0.40 TCGA-K4-A54R-01 12 49359969 49359969 C T WNT10B Missense_Mutation p.R360Q 0.29 deleterious(0.02) benign(0.003) TCGA-K4-A54R-01 12 49425545 49425545 G A KMT2D Nonsense_Mutation p.Q4315* 0.25 TCGA-K4-A54R-01 12 50044456 50044456 C T FMNL3 Intron 0.25 TCGA-K4-A54R-01 12 51590675 51590675 G A POU6F1 5'UTR 0.32 TCGA-K4-A54R-01 12 51690924 51690924 G A BIN2 Silent p.I209I 0.48 TCGA-K4-A54R-01 12 53457763 53457763 G A TENC1 3'UTR 0.41 TCGA-K4-A54R-01 12 56547837 56547837 G A MYL6B Silent p.Q45Q 0.20 TCGA-K4-A54R-01 12 56552240 56552240 G A MYL6 Intron 0.37 TCGA-K4-A54R-01 12 56721847 56721847 C G PAN2 Missense_Mutation p.E195Q 0.26 tolerated(0.19) benign(0.134) TCGA-K4-A54R-01 12 56865232 56865232 C T GLS2 3'UTR 0.43 TCGA-K4-A54R-01 12 57430566 57430566 C G MYO1A Missense_Mutation p.R755T 0.29 deleterious(0.03) probably_damaging(0.995) TCGA-K4-A54R-01 12 58204310 58204310 G A AVIL Nonsense_Mutation p.R195* 0.32 TCGA-K4-A54R-01 12 64178828 64178828 C G TMEM5 Nonsense_Mutation p.S135* 0.18 TCGA-K4-A54R-01 12 64587606 64587606 C G C12orf66 3'UTR 0.57 TCGA-K4-A54R-01 12 6762124 6762124 G T ING4 Missense_Mutation p.S123R 0.23 tolerated(0.12) possibly_damaging(0.786) TCGA-K4-A54R-01 12 6958149 6958149 G A CDCA3 3'UTR 0.37 TCGA-K4-A54R-01 12 6968694 6968694 C T USP5 Silent p.F373F 0.30 TCGA-K4-A54R-01 12 7025882 7025882 C G ENO2 Missense_Mutation p.L77V 0.27 tolerated_low_confidence(0.08) benign(0.028) TCGA-K4-A54R-01 12 72425365 72425365 G A TPH2 Missense_Mutation p.E455K 0.33 deleterious(0) possibly_damaging(0.738) TCGA-K4-A54R-01 12 7475048 7475048 G A ACSM4 Missense_Mutation p.G346R 0.33 deleterious(0) probably_damaging(0.977) TCGA-K4-A54R-01 12 7550886 7550886 C A CD163L1 Missense_Mutation p.R568I 0.30 deleterious(0.04) possibly_damaging(0.837) TCGA-K4-A54R-01 12 80704433 80704433 C G OTOGL Missense_Mutation p.Q1117E 0.24 tolerated(0.08) probably_damaging(0.94) TCGA-K4-A54R-01 12 91449797 91449797 C T KERA Missense_Mutation p.E88K 0.30 tolerated(0.15) possibly_damaging(0.491) TCGA-K4-A54R-01 12 91572192 91572192 G C DCN Missense_Mutation p.F46L 0.30 tolerated(0.9) benign(0) TCGA-K4-A54R-01 12 94631550 94631550 G A PLXNC1 Silent p.L697L 0.48 TCGA-K4-A54R-01 12 95483421 95483421 G A FGD6 Missense_Mutation p.S1301L 0.32 deleterious(0.01) benign(0.418) TCGA-K4-A54R-01 12 96421237 96421237 G A LTA4H Silent p.L132L 0.20 TCGA-K4-A54R-01 12 99053033 99053033 C T APAF1 Nonsense_Mutation p.Q208* 0.27 TCGA-K4-A54R-01 13 110828832 110828832 T A COL4A1 Silent p.G999G 0.26 TCGA-K4-A54R-01 13 111992271 111992271 C G TEX29 Missense_Mutation p.I77M 0.37 deleterious(0.04) possibly_damaging(0.506) TCGA-K4-A54R-01 13 113181345 113181345 G A TUBGCP3 Missense_Mutation p.S489L 0.14 deleterious(0) possibly_damaging(0.833) TCGA-K4-A54R-01 13 114203816 114203816 G C TMCO3 Missense_Mutation p.R666T 0.46 deleterious(0.01) benign(0.424) TCGA-K4-A54R-01 13 20611004 20611004 C T ZMYM2 Silent p.F749F 0.35 TCGA-K4-A54R-01 13 20716932 20716932 C T GJA3 Missense_Mutation p.G166S 0.19 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 13 20717191 20717191 C T GJA3 Silent p.A79A 0.37 TCGA-K4-A54R-01 13 20796741 20796741 C A GJB6 3'UTR 0.23 TCGA-K4-A54R-01 13 21013867 21013867 C T CRYL1 Silent p.L101L 0.25 TCGA-K4-A54R-01 13 23906980 23906980 G C SACS Missense_Mutation p.L3679V 0.18 probably_damaging(0.984) TCGA-K4-A54R-01 13 26542756 26542756 G A ATP8A2 Missense_Mutation p.E1106K 0.34 deleterious(0.02) benign(0.303) TCGA-K4-A54R-01 13 27332861 27332861 G A GPR12 3'UTR 0.38 TCGA-K4-A54R-01 13 47409484 47409484 C T HTR2A Missense_Mutation p.E302K 0.36 tolerated(0.47) possibly_damaging(0.528) TCGA-K4-A54R-01 13 49037966 49037966 C T RB1 Nonsense_Mutation p.Q736* 0.38 TCGA-K4-A54R-01 13 51826064 51826064 C T FAM124A Silent p.L223L 0.33 TCGA-K4-A54R-01 13 52585461 52585461 C G ATP7B Missense_Mutation p.E5Q 0.37 tolerated_low_confidence(0.21) benign(0.002) TCGA-K4-A54R-01 13 67801984 67801984 C G PCDH9 Missense_Mutation p.E197Q 0.52 tolerated(0.07) probably_damaging(0.991) TCGA-K4-A54R-01 13 78187030 78187030 C G SCEL Missense_Mutation p.Q448E 0.41 tolerated(0.08) benign(0.014) TCGA-K4-A54R-01 13 78187050 78187050 C G SCEL Missense_Mutation p.I454M 0.43 deleterious(0.02) benign(0.067) TCGA-K4-A54R-01 14 101004312 101004312 G T BEGAIN Silent p.L592L 0.32 TCGA-K4-A54R-01 14 101512804 101512804 G C MIR487B RNA 0.21 TCGA-K4-A54R-01 14 106471354 106471354 C T IGHV1-3 Silent p.Q81Q 0.23 TCGA-K4-A54R-01 14 107035003 107035003 G A IGHV5-51 Missense_Mutation p.S26F 0.20 deleterious(0) probably_damaging(0.961) TCGA-K4-A54R-01 14 20852018 20852018 G A TEP1 Silent p.F1198F 0.35 TCGA-K4-A54R-01 14 21462950 21462950 C T METTL17 Intron 0.25 TCGA-K4-A54R-01 14 21511744 21511744 C T RNASE7 3'UTR 0.60 TCGA-K4-A54R-01 14 23282617 23282617 G A SLC7A7 5'UTR 0.32 TCGA-K4-A54R-01 14 23869524 23869524 C G MYH6 Missense_Mutation p.E508Q 0.29 deleterious(0.04) possibly_damaging(0.811) TCGA-K4-A54R-01 14 24662186 24662186 G A TM9SF1 Missense_Mutation p.S212L 0.28 tolerated(0.08) benign(0.014) TCGA-K4-A54R-01 14 31358871 31358871 G C COCH Silent p.L509L 0.22 TCGA-K4-A54R-01 14 31917266 31917266 G A DTD2 3'UTR 0.29 TCGA-K4-A54R-01 14 39531042 39531042 C T SEC23A Missense_Mutation p.A478T 0.33 tolerated(0.19) benign(0.083) TCGA-K4-A54R-01 14 44973721 44973721 C T FSCB Missense_Mutation p.E824K 0.17 deleterious_low_confidence(0) unknown(0) TCGA-K4-A54R-01 14 47120396 47120396 C G RPL10L Missense_Mutation p.E182Q 0.33 tolerated(0.21) benign(0.08) TCGA-K4-A54R-01 14 52535546 52535546 G T NID2 Nonsense_Mutation p.S56* 0.23 TCGA-K4-A54R-01 14 54417242 54417242 C T BMP4 Silent p.R245R 0.32 TCGA-K4-A54R-01 14 56757113 56757113 C A PELI2 Missense_Mutation p.S212Y 0.24 deleterious(0) possibly_damaging(0.883) TCGA-K4-A54R-01 14 61747371 61747371 G T TMEM30B Silent p.I165I 0.42 TCGA-K4-A54R-01 14 63174348 63174348 G A KCNH5 Nonsense_Mutation p.Q949* 0.33 TCGA-K4-A54R-01 14 64514755 64514755 C G SYNE2 Missense_Mutation p.S2420C 0.19 probably_damaging(0.982) TCGA-K4-A54R-01 14 67849196 67849196 G C EIF2S1 Missense_Mutation p.M237I 0.31 tolerated(0.41) benign(0.046) TCGA-K4-A54R-01 14 69257008 69257008 G C ZFP36L1 Missense_Mutation p.R87G 0.20 deleterious(0) probably_damaging(0.993) TCGA-K4-A54R-01 14 69263046 69263046 G C ZFP36L1 5'Flank 0.26 TCGA-K4-A54R-01 14 73957853 73957853 G A HEATR4 Intron 0.27 TCGA-K4-A54R-01 14 74428026 74428026 C A COQ6 Missense_Mutation p.L348I 0.13 deleterious(0) probably_damaging(0.985) TCGA-K4-A54R-01 14 74428437 74428437 C T COQ6 Intron 0.26 TCGA-K4-A54R-01 14 75230113 75230113 C A YLPM1 5'UTR 0.22 TCGA-K4-A54R-01 14 76107351 76107351 C G FLVCR2 Missense_Mutation p.T430R 0.19 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 14 76107373 76107373 C G FLVCR2 Missense_Mutation p.I437M 0.19 tolerated(0.2) benign(0.007) TCGA-K4-A54R-01 14 77311209 77311209 C G C14orf166B Missense_Mutation p.S231C 0.30 tolerated(0.36) benign(0.029) TCGA-K4-A54R-01 14 77808332 77808332 C T TMED8 Splice_Site p.X254_splice 0.29 TCGA-K4-A54R-01 14 78285322 78285322 A C ADCK1 Translation_Start_Site p.M1? 0.25 tolerated(0.11) probably_damaging(0.931) TCGA-K4-A54R-01 14 79746585 79746585 C T NRXN3 Intron 0.32 TCGA-K4-A54R-01 14 91252589 91252589 G A TTC7B Nonsense_Mutation p.R69* 0.06 TCGA-K4-A54R-01 14 91647672 91647672 C T C14orf159 Silent p.I291I 0.41 TCGA-K4-A54R-01 14 92357586 92357586 C T FBLN5 Missense_Mutation p.E200K 0.26 tolerated(0.59) benign(0.037) TCGA-K4-A54R-01 14 94100967 94100967 C G UNC79 Missense_Mutation p.I1762M 0.20 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-K4-A54R-01 14 95562856 95562856 G C DICER1 Missense_Mutation p.I1467M 0.27 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-K4-A54R-01 14 95679735 95679735 G C CLMN Silent p.L143L 0.19 TCGA-K4-A54R-01 14 96829297 96829297 G T ATG2B Nonsense_Mutation p.S6* 0.22 TCGA-K4-A54R-01 15 101554532 101554532 C T LRRK1 Silent p.F477F 0.30 TCGA-K4-A54R-01 15 101591930 101591930 G A LRRK1 Missense_Mutation p.E1152K 0.26 deleterious(0.02) possibly_damaging(0.881) TCGA-K4-A54R-01 15 101605872 101605872 G C LRRK1 Missense_Mutation p.E1744Q 0.27 tolerated(0.11) benign(0.102) TCGA-K4-A54R-01 15 23889341 23889341 G A MAGEL2 Silent p.L580L 0.33 TCGA-K4-A54R-01 15 25456783 25456783 G T SNORD115-22 3'Flank 0.37 TCGA-K4-A54R-01 15 28211894 28211894 G A OCA2 Silent p.L526L 0.23 TCGA-K4-A54R-01 15 31283616 31283616 G A MTMR10 Intron 0.34 TCGA-K4-A54R-01 15 34130808 34130808 C T RYR3 Silent p.I4209I 0.44 TCGA-K4-A54R-01 15 40685573 40685573 G A KNSTRN Intron 0.24 TCGA-K4-A54R-01 15 40685588 40685588 G C KNSTRN Intron 0.27 TCGA-K4-A54R-01 15 41245949 41245949 C T CHAC1 Silent p.F98F 0.23 TCGA-K4-A54R-01 15 41657633 41657633 C G NUSAP1 Missense_Mutation p.P232A 0.28 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 15 42148790 42148790 C G SPTBN5 Missense_Mutation p.E2939Q 0.24 probably_damaging(0.999) TCGA-K4-A54R-01 15 42193056 42193056 C T EHD4 Silent p.K471K 0.26 TCGA-K4-A54R-01 15 42434157 42434157 C T PLA2G4F 3'UTR 0.33 TCGA-K4-A54R-01 15 43714125 43714125 C T TP53BP1 Missense_Mutation p.R1343K 0.30 tolerated(1) benign(0.001) TCGA-K4-A54R-01 15 43890494 43890494 G C CKMT1B Missense_Mutation p.G327A 0.27 deleterious(0.01) possibly_damaging(0.872) TCGA-K4-A54R-01 15 44127308 44127308 C T WDR76 Missense_Mutation p.S171L 0.23 deleterious(0.04) benign(0.062) TCGA-K4-A54R-01 15 45059619 45059619 A G TRIM69 Silent p.V384V 0.30 TCGA-K4-A54R-01 15 48780691 48780691 C A FBN1 Splice_Site p.X1028_splice 0.26 TCGA-K4-A54R-01 15 48818331 48818331 G A FBN1 Silent p.C328C 0.24 TCGA-K4-A54R-01 15 50789403 50789403 C T USP8 Missense_Mutation p.P1005S 0.32 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 15 51981539 51981539 C T SCG3 Nonsense_Mutation p.Q222* 0.23 TCGA-K4-A54R-01 15 52186130 52186130 G A TMOD3 Silent p.L205L 0.34 TCGA-K4-A54R-01 15 54003679 54003679 C G WDR72 Splice_Site p.X238_splice 0.23 TCGA-K4-A54R-01 15 58971386 58971386 C T ADAM10 Missense_Mutation p.E141K 0.46 tolerated(0.32) benign(0.016) TCGA-K4-A54R-01 15 59181706 59181706 G A SLTM Silent p.L709L 0.23 TCGA-K4-A54R-01 15 60795042 60795042 C G RORA Missense_Mutation p.R400T 0.37 deleterious(0) probably_damaging(0.949) TCGA-K4-A54R-01 15 63014626 63014626 G T TLN2 Silent p.L1022L 0.32 TCGA-K4-A54R-01 15 63354438 63354438 G C TPM1 Missense_Mutation p.E222Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-K4-A54R-01 15 65255951 65255951 G A SPG21 3'UTR 0.28 TCGA-K4-A54R-01 15 65443231 65443231 G A CLPX Missense_Mutation p.S611F 0.38 deleterious(0.02) benign(0.259) TCGA-K4-A54R-01 15 66599265 66599265 G C DIS3L Missense_Mutation p.E133Q 0.12 deleterious(0) probably_damaging(0.989) TCGA-K4-A54R-01 15 69079862 69079862 C T ANP32A Missense_Mutation p.D73N 0.19 deleterious(0.04) benign(0.04) TCGA-K4-A54R-01 15 75133803 75133803 G T ULK3 Missense_Mutation p.L138M 0.21 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 15 78398199 78398199 C T CIB2 Missense_Mutation p.E142K 0.34 tolerated(0.69) benign(0.302) TCGA-K4-A54R-01 15 85406105 85406105 G C ALPK3 Missense_Mutation p.E1659Q 0.14 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 15 89173319 89173319 G C AEN Missense_Mutation p.D258H 0.27 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 15 89386725 89386725 C T ACAN Silent p.A299A 0.32 TCGA-K4-A54R-01 15 91025459 91025459 G A IQGAP1 Silent p.L1167L 0.29 TCGA-K4-A54R-01 16 1552929 1552929 C T TELO2 Intron 0.42 TCGA-K4-A54R-01 16 20975168 20975168 G A DNAH3 Silent p.I3346I 0.05 TCGA-K4-A54R-01 16 2167660 2167660 G T PKD1 Silent p.L405L 0.30 TCGA-K4-A54R-01 16 21991877 21991877 G C UQCRC2 Silent p.L378L 0.41 TCGA-K4-A54R-01 16 24808841 24808841 G C TNRC6A Missense_Mutation p.E1198Q 0.36 deleterious(0) possibly_damaging(0.771) TCGA-K4-A54R-01 16 24873930 24873930 G A SLC5A11 Silent p.V48V 0.40 TCGA-K4-A54R-01 16 29937285 29937285 G A KCTD13 Missense_Mutation p.L24F 0.13 tolerated_low_confidence(0.74) benign(0.302) TCGA-K4-A54R-01 16 30365287 30365287 C G CD2BP2 Missense_Mutation p.D104H 0.26 deleterious(0) benign(0.091) TCGA-K4-A54R-01 16 30371123 30371123 G C TBC1D10B Missense_Mutation p.I437M 0.36 deleterious(0.02) possibly_damaging(0.895) TCGA-K4-A54R-01 16 30794657 30794657 G A ZNF629 Missense_Mutation p.S331L 0.31 deleterious(0) probably_damaging(0.996) TCGA-K4-A54R-01 16 31008045 31008045 C T STX1B Missense_Mutation p.D166N 0.26 tolerated(0.06) benign(0.002) TCGA-K4-A54R-01 16 31008057 31008057 C T STX1B Missense_Mutation p.E162K 0.25 deleterious(0) benign(0.176) TCGA-K4-A54R-01 16 31336683 31336683 C T ITGAM Silent p.F822F 0.28 TCGA-K4-A54R-01 16 313399 313399 G C ITFG3 Silent p.L370L 0.42 TCGA-K4-A54R-01 16 313770 313770 G C ITFG3 Missense_Mutation p.R395T 0.42 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 16 31497544 31497544 C G SLC5A2 Missense_Mutation p.I174M 0.26 deleterious(0.03) possibly_damaging(0.903) TCGA-K4-A54R-01 16 3254993 3254993 C T OR1F1 Silent p.L249L 0.39 TCGA-K4-A54R-01 16 3713301 3713301 C G TRAP1 Intron 0.50 TCGA-K4-A54R-01 16 4242726 4242726 C G SRL Missense_Mutation p.E284Q 0.33 tolerated(0.23) probably_damaging(0.999) TCGA-K4-A54R-01 16 425418 425418 C T TMEM8A Silent p.E414E 0.38 TCGA-K4-A54R-01 16 47117675 47117675 C G NETO2 Missense_Mutation p.K345N 0.31 tolerated(0.6) benign(0.005) TCGA-K4-A54R-01 16 50750505 50750505 G A NOD2 Missense_Mutation p.D824N 0.21 tolerated(1) benign(0.01) TCGA-K4-A54R-01 16 50750868 50750868 G A NOD2 Silent p.Q871Q 0.29 TCGA-K4-A54R-01 16 55880715 55880715 C T CES5A Silent p.K516K 0.28 TCGA-K4-A54R-01 16 57481479 57481479 G A COQ9 Missense_Mutation p.R21Q 0.27 tolerated_low_confidence(0.07) benign(0.005) TCGA-K4-A54R-01 16 57550240 57550240 C T CCDC102A Missense_Mutation p.E462K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A54R-01 16 57719798 57719798 C G GPR97 Silent p.L500L 0.22 TCGA-K4-A54R-01 16 58201601 58201601 G A CSNK2A2 Silent p.L204L 0.31 TCGA-K4-A54R-01 16 58565904 58565904 C T CNOT1 Silent p.R2045R 0.22 TCGA-K4-A54R-01 16 66850901 66850901 C G NAE1 Missense_Mutation p.E239Q 0.24 deleterious(0.04) possibly_damaging(0.459) TCGA-K4-A54R-01 16 67432117 67432117 G A ZDHHC1 Nonsense_Mutation p.Q309* 0.21 TCGA-K4-A54R-01 16 67516590 67516590 G C AGRP Missense_Mutation p.F116L 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-K4-A54R-01 16 67968459 67968459 C G PSMB10 3'UTR 0.26 TCGA-K4-A54R-01 16 68856094 68856094 G A CDH1 Silent p.A634A 0.28 TCGA-K4-A54R-01 16 70172862 70172862 G C PDPR Silent p.L417L 0.15 TCGA-K4-A54R-01 16 70303574 70303574 C T AARS Silent p.R303R 0.26 TCGA-K4-A54R-01 16 70367514 70367514 C T DDX19B 3'UTR 0.27 TCGA-K4-A54R-01 16 70778474 70778474 C T VAC14 Silent p.L460L 0.35 TCGA-K4-A54R-01 16 70928446 70928446 C T HYDIN Missense_Mutation p.E3052K 0.24 possibly_damaging(0.801) TCGA-K4-A54R-01 16 71748661 71748661 C T PHLPP2 Missense_Mutation p.R13K 0.44 tolerated_low_confidence(0.97) benign(0.016) TCGA-K4-A54R-01 16 71779077 71779077 G A AP1G1 Missense_Mutation p.L660F 0.28 tolerated(0.06) benign(0.248) TCGA-K4-A54R-01 16 74425429 74425429 G A NPIPB15 Silent p.L261L 0.10 TCGA-K4-A54R-01 16 74447515 74447515 C A CLEC18B Missense_Mutation p.Q172H 0.17 tolerated(0.22) benign(0.02) TCGA-K4-A54R-01 16 74678298 74678298 C T RFWD3 Silent p.L347L 0.29 TCGA-K4-A54R-01 16 81118151 81118151 G C GCSH Missense_Mutation p.S114C 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-K4-A54R-01 16 81411163 81411163 C T GAN Nonsense_Mutation p.Q586* 0.25 TCGA-K4-A54R-01 16 89167325 89167325 C T ACSF3 Missense_Mutation p.S79F 0.25 deleterious(0) probably_damaging(0.958) TCGA-K4-A54R-01 16 89180833 89180833 A G ACSF3 Missense_Mutation p.Y355C 0.20 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 16 89590445 89590445 G A SPG7 Silent p.Q136Q 0.55 TCGA-K4-A54R-01 17 10432500 10432500 C T MYH2 Silent p.Q1111Q 0.33 TCGA-K4-A54R-01 17 11757537 11757537 G A DNAH9 Missense_Mutation p.R3242K 0.29 benign(0.002) TCGA-K4-A54R-01 17 12656455 12656455 C A MYOCD Missense_Mutation p.S617Y 0.23 deleterious(0.02) possibly_damaging(0.795) TCGA-K4-A54R-01 17 15535971 15535971 C G RP11-385D13.1 Missense_Mutation p.K289N 0.30 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-K4-A54R-01 17 1557133 1557133 G A PRPF8 Silent p.I2055I 0.23 TCGA-K4-A54R-01 17 17772668 17772668 G T TOM1L2 Missense_Mutation p.F299L 0.26 deleterious(0) probably_damaging(0.973) TCGA-K4-A54R-01 17 18054746 18054746 C G MYO15A Silent p.L2564L 0.26 TCGA-K4-A54R-01 17 18064645 18064645 G A MYO15A Missense_Mutation p.R3134Q 0.37 unknown(0) TCGA-K4-A54R-01 17 18066584 18066584 C G MYO15A Silent p.L3213L 0.32 TCGA-K4-A54R-01 17 18135878 18135878 C T LLGL1 Silent p.F83F 0.33 TCGA-K4-A54R-01 17 18634520 18634520 G T TRIM16L Missense_Mutation p.K113N 0.31 tolerated(0.06) benign(0.017) TCGA-K4-A54R-01 17 19284630 19284630 G A MAPK7 Missense_Mutation p.E370K 0.19 tolerated(0.76) unknown(0) TCGA-K4-A54R-01 17 21319444 21319444 C T KCNJ12 Silent p.L264L 0.20 TCGA-K4-A54R-01 17 21437068 21437068 G A C17orf51 3'UTR 0.44 TCGA-K4-A54R-01 17 2276671 2276671 G T SGSM2 Missense_Mutation p.W655L 0.23 deleterious(0) possibly_damaging(0.838) TCGA-K4-A54R-01 17 25937225 25937225 G C KSR1 Splice_Site p.X671_splice 0.24 TCGA-K4-A54R-01 17 26091036 26091036 C G NOS2 Missense_Mutation p.E855Q 0.29 tolerated(0.13) possibly_damaging(0.827) TCGA-K4-A54R-01 17 26890912 26890912 G C PIGS Missense_Mutation p.I100M 0.33 deleterious(0.01) benign(0.232) TCGA-K4-A54R-01 17 27903450 27903450 C G GIT1 Missense_Mutation p.E476Q 0.31 deleterious(0.03) benign(0.417) TCGA-K4-A54R-01 17 33269508 33269508 G C CCT6B Missense_Mutation p.Q294E 0.19 deleterious(0.01) possibly_damaging(0.474) TCGA-K4-A54R-01 17 33454098 33454098 G C FNDC8 Missense_Mutation p.D83H 0.34 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-K4-A54R-01 17 35300279 35300279 G A LHX1 Missense_Mutation p.E358K 0.36 deleterious(0.01) possibly_damaging(0.777) TCGA-K4-A54R-01 17 35783680 35783680 G C TADA2A Missense_Mutation p.E33Q 0.31 tolerated(0.2) benign(0.021) TCGA-K4-A54R-01 17 37883949 37883949 G A ERBB2 Silent p.V1140V 0.29 TCGA-K4-A54R-01 17 38818249 38818249 C G KRT222 Missense_Mutation p.L48F 0.24 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 17 38857397 38857397 C T KRT24 Missense_Mutation p.E284K 0.26 tolerated(0.09) possibly_damaging(0.477) TCGA-K4-A54R-01 17 40010049 40010049 C G KLHL11 Missense_Mutation p.E690D 0.32 tolerated_low_confidence(0.06) benign(0.199) TCGA-K4-A54R-01 17 40010531 40010531 C T KLHL11 Missense_Mutation p.E530K 0.32 tolerated(0.18) benign(0.035) TCGA-K4-A54R-01 17 40011119 40011119 C G KLHL11 Missense_Mutation p.E334Q 0.28 deleterious(0.02) benign(0.057) TCGA-K4-A54R-01 17 40011329 40011329 C A KLHL11 Nonsense_Mutation p.E264* 0.23 TCGA-K4-A54R-01 17 40011453 40011453 C T KLHL11 Silent p.L222L 0.33 TCGA-K4-A54R-01 17 40027972 40027972 C T ACLY Silent p.L969L 0.30 TCGA-K4-A54R-01 17 40178910 40178910 G A NKIRAS2 3'Flank 0.44 TCGA-K4-A54R-01 17 40265833 40265833 C T KAT2A Missense_Mutation p.R783Q 0.19 deleterious(0.01) benign(0.152) TCGA-K4-A54R-01 17 40486045 40486045 G C STAT3 Missense_Mutation p.Q274E 0.33 deleterious(0) benign(0.266) TCGA-K4-A54R-01 17 43333783 43333783 C G SPATA32 Splice_Site p.X23_splice 0.26 TCGA-K4-A54R-01 17 4458575 4458575 C G MYBBP1A Silent p.A15A 0.43 TCGA-K4-A54R-01 17 45481968 45481968 G C EFCAB13 Missense_Mutation p.L734F 0.24 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 17 4575078 4575078 C G PELP1 Missense_Mutation p.E1070Q 0.26 unknown(0) TCGA-K4-A54R-01 17 46024225 46024225 C G PNPO 3'UTR 0.24 TCGA-K4-A54R-01 17 47841418 47841418 C T FAM117A Missense_Mutation p.G11E 0.33 deleterious_low_confidence(0) unknown(0) TCGA-K4-A54R-01 17 48677122 48677122 G A CACNA1G Missense_Mutation p.D1198N 0.42 deleterious(0.02) benign(0.16) TCGA-K4-A54R-01 17 48817687 48817687 G C LUC7L3 Missense_Mutation p.D63H 0.39 deleterious(0) unknown(0) TCGA-K4-A54R-01 17 48818500 48818500 G C LUC7L3 Missense_Mutation p.E82Q 0.29 deleterious(0.02) unknown(0) TCGA-K4-A54R-01 17 49280072 49280072 G C MBTD1 Missense_Mutation p.F351L 0.26 tolerated(0.85) benign(0) TCGA-K4-A54R-01 17 5118222 5118222 G C SCIMP Missense_Mutation p.S94C 0.27 deleterious(0.04) possibly_damaging(0.518) TCGA-K4-A54R-01 17 53040324 53040324 A G COX11 Intron 0.23 TCGA-K4-A54R-01 17 54543891 54543891 G A ANKFN1 Missense_Mutation p.E581K 0.25 deleterious(0.03) possibly_damaging(0.76) TCGA-K4-A54R-01 17 5461957 5461957 C T NLRP1 Missense_Mutation p.E687K 0.28 tolerated(0.06) benign(0.03) TCGA-K4-A54R-01 17 5461965 5461965 C T NLRP1 Missense_Mutation p.R684K 0.27 tolerated(0.2) benign(0.348) TCGA-K4-A54R-01 17 5462104 5462104 C G NLRP1 Missense_Mutation p.E638Q 0.31 tolerated(0.18) possibly_damaging(0.573) TCGA-K4-A54R-01 17 56084522 56084522 C G SRSF1 5'UTR 0.28 TCGA-K4-A54R-01 17 57322854 57322854 G C GDPD1 Missense_Mutation p.E89Q 0.35 tolerated(0.33) benign(0.007) TCGA-K4-A54R-01 17 58734121 58734121 G A PPM1D Silent p.L393L 0.22 TCGA-K4-A54R-01 17 63049726 63049726 C T GNA13 Missense_Mutation p.G135E 0.33 tolerated(0.55) probably_damaging(1) TCGA-K4-A54R-01 17 63533173 63533173 C T AXIN2 Missense_Mutation p.R574K 0.42 tolerated(0.87) benign(0.014) TCGA-K4-A54R-01 17 6531776 6531776 G A KIAA0753 Nonsense_Mutation p.Q127* 0.29 TCGA-K4-A54R-01 17 67023536 67023536 G C ABCA9 Missense_Mutation p.Q616E 0.25 tolerated(0.7) benign(0.006) TCGA-K4-A54R-01 17 67040706 67040706 C T ABCA9 Missense_Mutation p.E169K 0.14 tolerated(0.76) benign(0.014) TCGA-K4-A54R-01 17 7017662 7017662 G C ASGR2 Intron 0.30 TCGA-K4-A54R-01 17 7189889 7189889 G A SLC2A4 Missense_Mutation p.E491K 0.31 tolerated(0.9) benign(0.065) TCGA-K4-A54R-01 17 72353677 72353677 C A BTBD17 Nonsense_Mutation p.E186* 0.40 TCGA-K4-A54R-01 17 73016694 73016694 G A ICT1 Missense_Mutation p.E160K 0.32 tolerated(0.12) benign(0.12) TCGA-K4-A54R-01 17 7319382 7319382 C G NLGN2 Silent p.L530L 0.40 TCGA-K4-A54R-01 17 73515073 73515073 G C TSEN54 Intron 0.27 TCGA-K4-A54R-01 17 7366829 7366829 C G ZBTB4 Missense_Mutation p.G491A 0.20 probably_damaging(0.91) TCGA-K4-A54R-01 17 73753635 73753635 G A ITGB4 Silent p.%3D 0.24 TCGA-K4-A54R-01 17 73909839 73909839 G A FBF1 Missense_Mutation p.S1049F 0.26 tolerated(0.16) possibly_damaging(0.461) TCGA-K4-A54R-01 17 73914310 73914310 G A FBF1 Silent p.L712L 0.35 TCGA-K4-A54R-01 17 74277002 74277002 G A QRICH2 Silent p.A1266A 0.34 TCGA-K4-A54R-01 17 75201397 75201397 G C SEC14L1 Missense_Mutation p.E380Q 0.27 tolerated(0.12) probably_damaging(0.966) TCGA-K4-A54R-01 17 7577065 7577065 C - TP53 Frame_Shift_Del p.E294Sfs*51 0.20 TCGA-K4-A54R-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.22 deleterious(0) probably_damaging(0.985) TCGA-K4-A54R-01 17 76567725 76567725 C T DNAH17 Missense_Mutation p.E227K 0.25 probably_damaging(0.999) TCGA-K4-A54R-01 17 78319520 78319520 C G RNF213 Missense_Mutation p.S2462C 0.29 possibly_damaging(0.847) TCGA-K4-A54R-01 17 78326614 78326614 C T RNF213 Intron 0.26 TCGA-K4-A54R-01 17 8793350 8793350 G A PIK3R5 Missense_Mutation p.R251W 0.32 deleterious(0) possibly_damaging(0.67) TCGA-K4-A54R-01 18 12982559 12982559 C T SEH1L Silent p.I268I 0.43 TCGA-K4-A54R-01 18 13059191 13059191 C T CEP192 Silent p.F1456F 0.49 TCGA-K4-A54R-01 18 2728535 2728535 G C SMCHD1 Missense_Mutation p.E952Q 0.26 deleterious(0.05) possibly_damaging(0.883) TCGA-K4-A54R-01 18 29205470 29205470 C G B4GALT6 3'UTR 0.29 TCGA-K4-A54R-01 18 34839145 34839145 G A CELF4 Silent p.F444F 0.28 TCGA-K4-A54R-01 18 44555306 44555306 G A TCEB3C Missense_Mutation p.P303L 0.06 tolerated(0.13) probably_damaging(0.996) TCGA-K4-A54R-01 18 47015893 47015893 C G RPL17 Missense_Mutation p.E115Q 0.36 deleterious(0.04) possibly_damaging(0.858) TCGA-K4-A54R-01 18 47322148 47322148 C T ACAA2 Missense_Mutation p.G139E 0.31 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 18 47753903 47753903 C G CCDC11 Missense_Mutation p.E465Q 0.33 tolerated(0.1) benign(0.088) TCGA-K4-A54R-01 18 47796389 47796389 C G MBD1 Intron 0.33 TCGA-K4-A54R-01 18 47799226 47799226 C T MBD1 Missense_Mutation p.E562K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-K4-A54R-01 18 47799265 47799265 C G MBD1 Missense_Mutation p.E549Q 0.32 deleterious_low_confidence(0.01) benign(0.419) TCGA-K4-A54R-01 18 47799761 47799761 C T MBD1 Nonsense_Mutation p.W509* 0.34 TCGA-K4-A54R-01 18 47799766 47799766 C T MBD1 Missense_Mutation p.E508K 0.34 deleterious_low_confidence(0.01) benign(0.284) TCGA-K4-A54R-01 18 47811696 47811696 G A CXXC1 Missense_Mutation p.S222L 0.30 deleterious_low_confidence(0.03) benign(0.086) TCGA-K4-A54R-01 18 51855718 51855718 C T STARD6 Missense_Mutation p.E160K 0.24 tolerated(0.12) probably_damaging(0.94) TCGA-K4-A54R-01 18 61018181 61018181 G C KDSR Missense_Mutation p.F183L 0.29 tolerated(0.14) possibly_damaging(0.472) TCGA-K4-A54R-01 18 67687894 67687894 G C RTTN Nonsense_Mutation p.S2037* 0.30 TCGA-K4-A54R-01 18 77090015 77090015 G A ATP9B Missense_Mutation p.E647K 0.29 tolerated(0.35) benign(0.133) TCGA-K4-A54R-01 18 77895030 77895030 G C ADNP2 Silent p.V578V 0.26 TCGA-K4-A54R-01 19 10078593 10078593 G C COL5A3 Nonsense_Mutation p.S1464* 0.27 TCGA-K4-A54R-01 19 1036075 1036075 C A CNN2 Intron 0.43 TCGA-K4-A54R-01 19 10668466 10668466 C G KRI1 Missense_Mutation p.E495Q 0.27 tolerated(0.09) benign(0.01) TCGA-K4-A54R-01 19 10692456 10692456 G A AP1M2 Silent p.F122F 0.29 TCGA-K4-A54R-01 19 10694334 10694334 G A AP1M2 Missense_Mutation p.S72L 0.35 tolerated(0.09) benign(0.001) TCGA-K4-A54R-01 19 11486676 11486676 C G SWSAP1 Missense_Mutation p.S225C 0.53 deleterious(0) possibly_damaging(0.7) TCGA-K4-A54R-01 19 11569040 11569040 G C ELAVL3 Missense_Mutation p.I183M 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-K4-A54R-01 19 12014495 12014495 C T ZNF69 Silent p.F43F 0.32 TCGA-K4-A54R-01 19 12243347 12243347 C T ZNF20 3'UTR 0.31 TCGA-K4-A54R-01 19 12463854 12463854 C G ZNF442 Missense_Mutation p.K51N 0.20 deleterious(0) possibly_damaging(0.465) TCGA-K4-A54R-01 19 12502251 12502251 G C ZNF799 Missense_Mutation p.L321V 0.27 tolerated(0.49) benign(0.423) TCGA-K4-A54R-01 19 12848430 12848430 G A ASNA1 Silent p.L37L 0.21 TCGA-K4-A54R-01 19 13264012 13264012 G A IER2 Silent p.Q4Q 0.40 TCGA-K4-A54R-01 19 14271011 14271011 C G LPHN1 Silent p.L576L 0.32 TCGA-K4-A54R-01 19 14288452 14288452 C G LPHN1 Missense_Mutation p.E59Q 0.31 deleterious(0.03) benign(0.256) TCGA-K4-A54R-01 19 14910743 14910743 G T OR7C1 Missense_Mutation p.A69D 0.29 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-K4-A54R-01 19 15065107 15065107 C T SLC1A6 Missense_Mutation p.E402K 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-K4-A54R-01 19 15072675 15072675 G C SLC1A6 Intron 0.40 TCGA-K4-A54R-01 19 15164728 15164728 G A CASP14 Missense_Mutation p.R121Q 0.27 tolerated(0.66) possibly_damaging(0.836) TCGA-K4-A54R-01 19 15367059 15367059 C T BRD4 Missense_Mutation p.E523K 0.22 benign(0.305) TCGA-K4-A54R-01 19 16025414 16025414 C T CYP4F11 Missense_Mutation p.E438K 0.26 tolerated(0.12) benign(0.25) TCGA-K4-A54R-01 19 16799144 16799144 G A TMEM38A Missense_Mutation p.E288K 0.31 tolerated(0.09) probably_damaging(0.997) TCGA-K4-A54R-01 19 16963895 16963895 C T SIN3B Missense_Mutation p.R289C 0.28 tolerated(0.08) benign(0.023) TCGA-K4-A54R-01 19 17435670 17435670 C T ANO8 Missense_Mutation p.E1063K 0.32 tolerated_low_confidence(0.43) unknown(0) TCGA-K4-A54R-01 19 17732668 17732668 C G UNC13A Missense_Mutation p.L1405F 0.28 tolerated(0.14) benign(0.002) TCGA-K4-A54R-01 19 18684538 18684538 C G UBA52 Nonsense_Mutation p.S57* 0.27 TCGA-K4-A54R-01 19 18968284 18968284 C G UPF1 Silent p.L708L 0.22 TCGA-K4-A54R-01 19 19004313 19004313 G C CERS1 Silent p.L107L 0.32 TCGA-K4-A54R-01 19 19626987 19626987 C T NDUFA13 5'UTR 0.34 TCGA-K4-A54R-01 19 19638891 19638891 G A NDUFA13 Missense_Mutation p.E131K 0.25 tolerated_low_confidence(0.28) benign(0.054) TCGA-K4-A54R-01 19 19741323 19741323 C A GMIP Missense_Mutation p.Q832H 0.26 tolerated(0.05) benign(0.002) TCGA-K4-A54R-01 19 19822554 19822554 G A ZNF14 Silent p.F512F 0.26 TCGA-K4-A54R-01 19 2110177 2110177 G T AP3D1 Silent p.V1074V 0.31 TCGA-K4-A54R-01 19 2213419 2213419 C A DOT1L Intron 0.40 TCGA-K4-A54R-01 19 2217020 2217020 G C DOT1L Silent p.L825L 0.23 TCGA-K4-A54R-01 19 23557536 23557536 C T ZNF91 Missense_Mutation p.E21K 0.25 deleterious(0.03) possibly_damaging(0.748) TCGA-K4-A54R-01 19 2408470 2408470 C T TMPRSS9 Missense_Mutation p.A286V 0.31 tolerated(0.31) benign(0.025) TCGA-K4-A54R-01 19 30934959 30934959 G T ZNF536 Missense_Mutation p.D164Y 0.33 tolerated(0.08) probably_damaging(1) TCGA-K4-A54R-01 19 33600726 33600726 G A GPATCH1 Silent p.R463R 0.24 TCGA-K4-A54R-01 19 34262881 34262881 C T CHST8 Missense_Mutation p.S63F 0.24 tolerated(0.73) benign(0.001) TCGA-K4-A54R-01 19 35169654 35169654 C T ZNF302 5'UTR 0.29 TCGA-K4-A54R-01 19 35513813 35513813 G T GRAMD1A Silent p.V617V 0.20 TCGA-K4-A54R-01 19 35616080 35616080 G C LGI4 3'UTR 0.38 TCGA-K4-A54R-01 19 36053455 36053455 A T ATP4A Missense_Mutation p.V101D 0.24 deleterious(0) probably_damaging(0.921) TCGA-K4-A54R-01 19 36054283 36054283 C G ATP4A Intron 0.20 TCGA-K4-A54R-01 19 362264 362264 G C THEG Missense_Mutation p.S359C 0.32 tolerated(0.28) benign(0.009) TCGA-K4-A54R-01 19 37037715 37037715 C T ZNF529 3'UTR 0.22 TCGA-K4-A54R-01 19 38102911 38102911 G T ZNF540 Nonsense_Mutation p.E244* 0.18 TCGA-K4-A54R-01 19 38948755 38948755 G C RYR1 Missense_Mutation p.E664Q 0.28 probably_damaging(1) TCGA-K4-A54R-01 19 40513302 40513302 C T ZNF546 Missense_Mutation p.S98L 0.31 deleterious(0.01) possibly_damaging(0.637) TCGA-K4-A54R-01 19 40901021 40901021 G A PRX Missense_Mutation p.R1080C 0.39 tolerated(0.06) possibly_damaging(0.835) TCGA-K4-A54R-01 19 4117414 4117414 C T MAP2K2 Intron 0.37 TCGA-K4-A54R-01 19 41858786 41858786 G A TGFB1 Missense_Mutation p.S55F 0.33 deleterious(0) probably_damaging(0.993) TCGA-K4-A54R-01 19 41863866 41863866 C G B9D2 Missense_Mutation p.Q50H 0.29 deleterious(0.04) benign(0.222) TCGA-K4-A54R-01 19 42083891 42083891 C G CEACAM21 Missense_Mutation p.S135C 0.24 deleterious(0) possibly_damaging(0.735) TCGA-K4-A54R-01 19 42222203 42222203 C G CEACAM5 Missense_Mutation p.S465C 0.29 deleterious(0.01) probably_damaging(0.947) TCGA-K4-A54R-01 19 42736658 42736658 G A GSK3A Silent p.F425F 0.26 TCGA-K4-A54R-01 19 42909686 42909686 G C LIPE Nonsense_Mutation p.S798* 0.30 TCGA-K4-A54R-01 19 43708205 43708205 C G PSG4 Missense_Mutation p.R88T 0.27 tolerated(0.69) benign(0.01) TCGA-K4-A54R-01 19 43922597 43922597 G A TEX101 3'UTR 0.30 TCGA-K4-A54R-01 19 44254803 44254803 G A SMG9 Missense_Mutation p.L31F 0.36 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-K4-A54R-01 19 44352695 44352695 C G ZNF283 Missense_Mutation p.H648D 0.29 deleterious(0) benign(0.003) TCGA-K4-A54R-01 19 4446075 4446075 C T UBXN6 Missense_Mutation p.E391K 0.29 deleterious(0.01) possibly_damaging(0.871) TCGA-K4-A54R-01 19 45716494 45716494 G C EXOC3L2 Missense_Mutation p.R355G 0.21 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 19 45888872 45888872 C T PPP1R13L Silent p.E732E 0.22 TCGA-K4-A54R-01 19 46087920 46087920 C G OPA3 Missense_Mutation p.E35Q 0.28 tolerated(0.22) benign(0.146) TCGA-K4-A54R-01 19 46142257 46142257 G A EML2 Intron 0.26 TCGA-K4-A54R-01 19 46375740 46375740 G A FOXA3 Silent p.Q159Q 0.29 TCGA-K4-A54R-01 19 46404863 46404863 C T MYPOP Missense_Mutation p.D57N 0.21 deleterious(0) benign(0.308) TCGA-K4-A54R-01 19 46815446 46815446 G A HIF3A Missense_Mutation p.D267N 0.31 tolerated(0.09) benign(0.311) TCGA-K4-A54R-01 19 47572352 47572352 C T ZC3H4 Missense_Mutation p.E799K 0.30 unknown(0) TCGA-K4-A54R-01 19 4793481 4793481 C T FEM1A Silent p.L539L 0.29 TCGA-K4-A54R-01 19 47984069 47984069 C G KPTN Missense_Mutation p.E183Q 0.27 tolerated(0.13) possibly_damaging(0.555) TCGA-K4-A54R-01 19 49845742 49845742 C G TEAD2 Missense_Mutation p.E399Q 0.26 deleterious(0) possibly_damaging(0.746) TCGA-K4-A54R-01 19 50100969 50100969 C G PRR12 Missense_Mutation p.S1126C 0.27 probably_damaging(0.994) TCGA-K4-A54R-01 19 50169015 50169015 C G IRF3 5'UTR 0.39 TCGA-K4-A54R-01 19 50189926 50189926 G A PRMT1 Silent p.V325V 0.26 TCGA-K4-A54R-01 19 50981257 50981257 C T EMC10 Silent p.I62I 0.25 TCGA-K4-A54R-01 19 5208373 5208373 G C PTPRS Missense_Mutation p.F1839L 0.22 deleterious(0) possibly_damaging(0.862) TCGA-K4-A54R-01 19 52619163 52619163 G A ZNF616 Silent p.F418F 0.27 TCGA-K4-A54R-01 19 52793453 52793453 C T ZNF766 Nonsense_Mutation p.Q137* 0.23 TCGA-K4-A54R-01 19 52793746 52793746 G A ZNF766 Nonsense_Mutation p.W234* 0.28 TCGA-K4-A54R-01 19 54169950 54169950 C G MIR512-1 RNA 0.20 TCGA-K4-A54R-01 19 55677376 55677376 G A DNAAF3 Silent p.I94I 0.31 TCGA-K4-A54R-01 19 55693230 55693230 G C PTPRH Silent p.L1080L 0.38 TCGA-K4-A54R-01 19 55899468 55899468 G A RPL28 Intron 0.24 TCGA-K4-A54R-01 19 56934718 56934718 C T ZNF583 Nonsense_Mutation p.Q231* 0.31 TCGA-K4-A54R-01 19 57325023 57325023 C G PEG3 3'UTR 0.26 TCGA-K4-A54R-01 19 58238826 58238826 C T ZNF671 Missense_Mutation p.R24K 0.32 tolerated(0.49) benign(0) TCGA-K4-A54R-01 19 58452517 58452517 C G ZNF256 Missense_Mutation p.W553C 0.22 deleterious(0) benign(0.004) TCGA-K4-A54R-01 19 58723580 58723580 G C ZNF274 Missense_Mutation p.E344Q 0.27 tolerated(0.34) benign(0.003) TCGA-K4-A54R-01 19 58868471 58868471 G A ZNF497 Silent p.L177L 0.19 TCGA-K4-A54R-01 19 58966697 58966697 C T ZNF324B Missense_Mutation p.S129F 0.26 tolerated(0.42) benign(0.015) TCGA-K4-A54R-01 19 59073864 59073864 C T MZF1 Missense_Mutation p.E594K 0.27 deleterious(0.03) benign(0.035) TCGA-K4-A54R-01 19 5978150 5978150 C T RANBP3 5'UTR 0.29 TCGA-K4-A54R-01 19 5994902 5994902 C T RFX2 Missense_Mutation p.E706K 0.36 deleterious_low_confidence(0.05) benign(0.049) TCGA-K4-A54R-01 19 629861 629861 C G POLRMT Silent p.L167L 0.32 TCGA-K4-A54R-01 19 6433729 6433729 C G SLC25A41 5'UTR 0.37 TCGA-K4-A54R-01 19 746482 746482 G A PALM Missense_Mutation p.A278T 0.33 tolerated(0.09) possibly_damaging(0.609) TCGA-K4-A54R-01 19 8038733 8038733 C TT ELAVL1 Frame_Shift_Ins p.I103Nfs*53 0.25 TCGA-K4-A54R-01 19 8619567 8619567 C T MYO1F Missense_Mutation p.D68N 0.22 deleterious(0.01) benign(0.305) TCGA-K4-A54R-01 19 9000463 9000463 C T MUC16 Silent p.T13507T 0.29 TCGA-K4-A54R-01 19 9066585 9066585 C T MUC16 Missense_Mutation p.R6954K 0.34 unknown(0) TCGA-K4-A54R-01 19 9066895 9066895 C T MUC16 Missense_Mutation p.E6851K 0.33 unknown(0) TCGA-K4-A54R-01 19 9086320 9086320 G C MUC16 Missense_Mutation p.S1832C 0.29 unknown(0) TCGA-K4-A54R-01 19 9771438 9771438 G A ZNF562 5'UTR 0.34 TCGA-K4-A54R-01 1 10477563 10477563 G C PGD Missense_Mutation p.R369T 0.36 deleterious(0) probably_damaging(0.983) TCGA-K4-A54R-01 1 10689948 10689948 G A PEX14 Silent p.Q346Q 0.24 TCGA-K4-A54R-01 1 109472432 109472432 G A GPSM2 Missense_Mutation p.R642K 0.26 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 1 109472462 109472462 G A GPSM2 Missense_Mutation p.R652K 0.27 tolerated(0.69) benign(0) TCGA-K4-A54R-01 1 110754575 110754575 C T KCNC4 Missense_Mutation p.R152C 0.76 deleterious(0) benign(0.372) TCGA-K4-A54R-01 1 111857895 111857895 C T CHIA Silent p.F106F 0.22 TCGA-K4-A54R-01 1 111857934 111857934 C A CHIA Missense_Mutation p.F119L 0.23 deleterious(0.01) probably_damaging(1) TCGA-K4-A54R-01 1 115268894 115268894 C T CSDE1 Silent p.L572L 0.24 TCGA-K4-A54R-01 1 116227977 116227977 G A VANGL1 Silent p.Q381Q 0.35 TCGA-K4-A54R-01 1 11728998 11728998 G T FBXO6 Nonsense_Mutation p.E95* 0.34 TCGA-K4-A54R-01 1 119934814 119934814 G T HAO2 Missense_Mutation p.D285Y 0.31 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 1 120050150 120050150 G C HSD3B1 Missense_Mutation p.Q17H 0.29 tolerated(0.07) benign(0.088) TCGA-K4-A54R-01 1 1328173 1328173 C G CCNL2 Intron 0.60 TCGA-K4-A54R-01 1 1330901 1330901 G C CCNL2 Intron 0.20 TCGA-K4-A54R-01 1 145525031 145525031 G C ITGA10 5'UTR 0.34 TCGA-K4-A54R-01 1 150390091 150390091 G C RPRD2 Missense_Mutation p.L75F 0.24 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-K4-A54R-01 1 150921605 150921605 G A SETDB1 Silent p.V425V 0.33 TCGA-K4-A54R-01 1 151314685 151314685 C T RFX5 Missense_Mutation p.D610N 0.29 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-K4-A54R-01 1 151748005 151748005 C G TDRKH Missense_Mutation p.E433Q 0.33 deleterious(0) probably_damaging(0.953) TCGA-K4-A54R-01 1 152083184 152083184 C T TCHH Missense_Mutation p.E837K 0.21 unknown(0) TCGA-K4-A54R-01 1 152195631 152195631 C T HRNR Silent p.L33L 0.30 TCGA-K4-A54R-01 1 153431499 153431499 C G S100A7 5'UTR 0.32 TCGA-K4-A54R-01 1 153634779 153634779 C T ILF2 3'UTR 0.20 TCGA-K4-A54R-01 1 153634910 153634910 G C ILF2 Missense_Mutation p.Q379E 0.30 tolerated_low_confidence(1) unknown(0) TCGA-K4-A54R-01 1 153941041 153941041 G C CREB3L4 Missense_Mutation p.E14Q 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-K4-A54R-01 1 153941064 153941064 G C CREB3L4 Silent p.S21S 0.24 TCGA-K4-A54R-01 1 153941438 153941438 G C CREB3L4 Missense_Mutation p.L69F 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-K4-A54R-01 1 153941839 153941839 G A CREB3L4 Missense_Mutation p.D151N 0.29 tolerated(0.07) benign(0.24) TCGA-K4-A54R-01 1 154306580 154306580 C T ATP8B2 Intron 0.27 TCGA-K4-A54R-01 1 155255061 155255061 G C HCN3 Missense_Mutation p.E399Q 0.26 deleterious(0) probably_damaging(0.968) TCGA-K4-A54R-01 1 156013835 156013835 C T UBQLN4 Silent p.P360P 0.37 TCGA-K4-A54R-01 1 156047081 156047081 C T MEX3A Missense_Mutation p.E283K 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-K4-A54R-01 1 156047336 156047336 C T MEX3A Missense_Mutation p.E198K 0.27 deleterious(0) possibly_damaging(0.874) TCGA-K4-A54R-01 1 156096651 156096651 C T LMNA Intron 0.47 TCGA-K4-A54R-01 1 156214585 156214585 C A PAQR6 Nonsense_Mutation p.E137* 0.28 TCGA-K4-A54R-01 1 156228889 156228889 G T SMG5 Silent p.I783I 0.19 TCGA-K4-A54R-01 1 156228931 156228931 G A SMG5 Silent p.I769I 0.20 TCGA-K4-A54R-01 1 156641030 156641030 C T NES Missense_Mutation p.E984K 0.28 deleterious(0.04) benign(0.037) TCGA-K4-A54R-01 1 156843618 156843618 C G NTRK1 Silent p.L348L 0.27 TCGA-K4-A54R-01 1 161569510 161569510 C G FCGR2C Intron 0.28 TCGA-K4-A54R-01 1 165634313 165634313 G T ALDH9A1 Missense_Mutation p.F468L 0.38 deleterious(0) benign(0.217) TCGA-K4-A54R-01 1 17029388 17029388 C T ESPNP RNA 0.20 TCGA-K4-A54R-01 1 171249990 171249990 G A FMO1 Nonsense_Mutation p.W231* 0.29 TCGA-K4-A54R-01 1 175996740 175996740 G A RFWD2 Missense_Mutation p.S566F 0.30 deleterious(0.02) benign(0.222) TCGA-K4-A54R-01 1 176661406 176661406 C T PAPPA2 Missense_Mutation p.S859F 0.25 deleterious(0) probably_damaging(0.99) TCGA-K4-A54R-01 1 177249587 177249587 C G BRINP2 Silent p.L425L 0.37 TCGA-K4-A54R-01 1 177930078 177930078 C G SEC16B Intron 0.25 TCGA-K4-A54R-01 1 180913522 180913522 C T KIAA1614 Intron 0.29 TCGA-K4-A54R-01 1 183206524 183206524 C T LAMC2 Missense_Mutation p.S880L 0.23 tolerated(0.05) benign(0.118) TCGA-K4-A54R-01 1 183559431 183559431 C T NCF2 Missense_Mutation p.E12K 0.37 deleterious(0.04) benign(0.436) TCGA-K4-A54R-01 1 183604825 183604825 C T ARPC5 5'UTR 0.20 TCGA-K4-A54R-01 1 185897700 185897700 G C HMCN1 Missense_Mutation p.D485H 0.29 possibly_damaging(0.525) TCGA-K4-A54R-01 1 19490763 19490763 C G UBR4 Missense_Mutation p.D1562H 0.23 possibly_damaging(0.45) TCGA-K4-A54R-01 1 197030940 197030940 G A F13B Missense_Mutation p.S142F 0.41 tolerated(0.09) benign(0.367) TCGA-K4-A54R-01 1 197390684 197390684 G A CRB1 Missense_Mutation p.E576K 0.35 tolerated(0.1) benign(0.042) TCGA-K4-A54R-01 1 197407915 197407915 C A CRB1 Intron 0.50 TCGA-K4-A54R-01 1 198672487 198672487 C G PTPRC Nonsense_Mutation p.S215* 0.24 TCGA-K4-A54R-01 1 198697499 198697499 C T PTPRC Missense_Mutation p.A584V 0.24 tolerated(1) benign(0.004) TCGA-K4-A54R-01 1 198723462 198723462 G C PTPRC Missense_Mutation p.E1192Q 0.31 deleterious(0) probably_damaging(0.987) TCGA-K4-A54R-01 1 201752843 201752843 G A NAV1 Silent p.Q889Q 0.27 TCGA-K4-A54R-01 1 203192731 203192731 G C CHIT1 Missense_Mutation p.I124M 0.33 deleterious(0) possibly_damaging(0.848) TCGA-K4-A54R-01 1 203668709 203668709 G C ATP2B4 Missense_Mutation p.W171C 0.32 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 1 205350864 205350864 C G LEMD1 Missense_Mutation p.L156F 0.26 deleterious(0) benign(0.006) TCGA-K4-A54R-01 1 205819036 205819036 C T PM20D1 Silent p.L55L 0.25 TCGA-K4-A54R-01 1 206649690 206649690 G A IKBKE Silent p.G175G 0.21 TCGA-K4-A54R-01 1 207273176 207273176 A T C4BPB Missense_Mutation p.N221Y 0.38 deleterious(0.01) possibly_damaging(0.635) TCGA-K4-A54R-01 1 207930511 207930511 C T CD46 Missense_Mutation p.H84Y 0.36 deleterious(0.01) possibly_damaging(0.823) TCGA-K4-A54R-01 1 209907892 209907892 G A HSD11B1 3'UTR 0.37 TCGA-K4-A54R-01 1 210016851 210016851 C G DIEXF Missense_Mutation p.H613D 0.27 deleterious(0) possibly_damaging(0.519) TCGA-K4-A54R-01 1 210948797 210948797 G A KCNH1 Silent p.L669L 0.30 TCGA-K4-A54R-01 1 21799933 21799933 C A NBPF3 Silent p.I265I 0.31 TCGA-K4-A54R-01 1 221053721 221053721 C T HLX Silent p.L174L 0.34 TCGA-K4-A54R-01 1 22206972 22206972 G T HSPG2 Silent p.L693L 0.20 TCGA-K4-A54R-01 1 223116204 223116204 G A DISP1 Silent p.L13L 0.25 TCGA-K4-A54R-01 1 226125176 226125176 C T LEFTY2 Missense_Mutation p.D356N 0.18 deleterious(0.03) possibly_damaging(0.859) TCGA-K4-A54R-01 1 226175824 226175824 C T SDE2 Missense_Mutation p.E303K 0.32 tolerated(0.09) benign(0.412) TCGA-K4-A54R-01 1 226180669 226180669 C G SDE2 Missense_Mutation p.Q91H 0.29 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 1 226555921 226555921 C T PARP1 Silent p.L752L 0.30 TCGA-K4-A54R-01 1 227504817 227504817 C A CDC42BPA Missense_Mutation p.G23W 0.32 deleterious(0) possibly_damaging(0.873) TCGA-K4-A54R-01 1 228494649 228494649 G A OBSCN Missense_Mutation p.E4949K 0.33 benign(0.405) TCGA-K4-A54R-01 1 228494791 228494791 G C OBSCN Missense_Mutation p.G4996A 0.34 possibly_damaging(0.601) TCGA-K4-A54R-01 1 230492827 230492827 C T PGBD5 Missense_Mutation p.G122E 0.26 tolerated(0.18) benign(0.049) TCGA-K4-A54R-01 1 23222908 23222908 C T EPHB2 Missense_Mutation p.R569W 0.27 tolerated(0.18) possibly_damaging(0.764) TCGA-K4-A54R-01 1 232650997 232650997 G C SIPA1L2 Nonsense_Mutation p.S30* 0.24 TCGA-K4-A54R-01 1 23420445 23420445 G A LUZP1 Missense_Mutation p.R104W 0.36 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 1 235318295 235318295 G A RBM34 Silent p.V166V 0.38 TCGA-K4-A54R-01 1 235827817 235827817 C G LYST Missense_Mutation p.E3715Q 0.36 deleterious(0) probably_damaging(0.99) TCGA-K4-A54R-01 1 235952110 235952110 G C LYST Missense_Mutation p.P1527A 0.27 tolerated(0.27) benign(0.05) TCGA-K4-A54R-01 1 236205249 236205249 G C NID1 Missense_Mutation p.Q366E 0.19 tolerated(0.18) possibly_damaging(0.507) TCGA-K4-A54R-01 1 236737981 236737981 G A HEATR1 Nonsense_Mutation p.Q1103* 0.29 TCGA-K4-A54R-01 1 23713787 23713787 C A TCEA3 Missense_Mutation p.K315N 0.40 deleterious(0) probably_damaging(0.988) TCGA-K4-A54R-01 1 237791252 237791252 G C RYR2 Missense_Mutation p.K2104N 0.33 probably_damaging(0.954) TCGA-K4-A54R-01 1 240072368 240072368 G C CHRM3 Silent p.V539V 0.30 TCGA-K4-A54R-01 1 24447338 24447338 G C IL22RA1 Missense_Mutation p.S561C 0.14 tolerated(0.08) benign(0.012) TCGA-K4-A54R-01 1 247063541 247063541 C T AHCTF1 Missense_Mutation p.E429K 0.25 deleterious(0.02) possibly_damaging(0.794) TCGA-K4-A54R-01 1 247150956 247150956 C G ZNF695 Missense_Mutation p.K287N 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-K4-A54R-01 1 247201107 247201107 C G ZNF670 Missense_Mutation p.E272Q 0.36 tolerated(0.06) probably_damaging(0.986) TCGA-K4-A54R-01 1 247752305 247752305 C T OR2G2 Missense_Mutation p.S215L 0.25 tolerated(0.15) benign(0.097) TCGA-K4-A54R-01 1 247769531 247769531 C T OR2G3 Missense_Mutation p.S215F 0.16 deleterious(0.02) benign(0.003) TCGA-K4-A54R-01 1 248737372 248737372 G A OR2T34 Silent p.L229L 0.18 TCGA-K4-A54R-01 1 26104604 26104604 G A MAN1C1 Silent p.E422E 0.31 TCGA-K4-A54R-01 1 27092809 27092809 C T ARID1A Nonsense_Mutation p.Q944* 0.30 TCGA-K4-A54R-01 1 27094386 27094386 G T ARID1A Nonsense_Mutation p.E1032* 0.22 TCGA-K4-A54R-01 1 27101254 27101254 G C ARID1A Missense_Mutation p.Q1512H 0.33 unknown(0) TCGA-K4-A54R-01 1 28071219 28071219 C T FAM76A Nonsense_Mutation p.Q171* 0.29 TCGA-K4-A54R-01 1 32279706 32279706 G A SPOCD1 Missense_Mutation p.S410L 0.18 deleterious(0.02) benign(0.126) TCGA-K4-A54R-01 1 32672326 32672326 G C IQCC Missense_Mutation p.E215Q 0.31 tolerated(0.19) possibly_damaging(0.451) TCGA-K4-A54R-01 1 32672864 32672864 G A IQCC Silent p.L274L 0.26 TCGA-K4-A54R-01 1 33295665 33295665 C T S100PBP Nonsense_Mutation p.Q341* 0.17 TCGA-K4-A54R-01 1 33790437 33790437 C G PHC2 3'UTR 0.35 TCGA-K4-A54R-01 1 33957045 33957045 C A ZSCAN20 Missense_Mutation p.P396Q 0.24 tolerated(0.16) probably_damaging(1) TCGA-K4-A54R-01 1 33990621 33990621 C T CSMD2 Silent p.K3275K 0.23 TCGA-K4-A54R-01 1 34035133 34035133 C T CSMD2 Missense_Mutation p.E2660K 0.14 tolerated(0.17) benign(0.155) TCGA-K4-A54R-01 1 3428643 3428643 G A MEGF6 Silent p.L301L 0.32 TCGA-K4-A54R-01 1 37324849 37324849 C T GRIK3 Missense_Mutation p.D322N 0.20 tolerated(0.07) benign(0.017) TCGA-K4-A54R-01 1 40319677 40319677 C G TRIT1 Missense_Mutation p.E127Q 0.18 deleterious(0) probably_damaging(0.993) TCGA-K4-A54R-01 1 40525085 40525085 C T CAP1 Missense_Mutation p.H23Y 0.22 tolerated(0.9) benign(0.003) TCGA-K4-A54R-01 1 40705118 40705118 G C RLF Missense_Mutation p.E1582Q 0.32 tolerated(0.13) benign(0.376) TCGA-K4-A54R-01 1 41514466 41514466 G C SCMH1 Missense_Mutation p.S391C 0.29 deleterious(0) probably_damaging(0.927) TCGA-K4-A54R-01 1 44878025 44878025 C G RNF220 Missense_Mutation p.R86G 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-K4-A54R-01 1 45887429 45887429 G A TESK2 Silent p.L104L 0.33 TCGA-K4-A54R-01 1 46509458 46509458 G C PIK3R3 Missense_Mutation p.L425V 0.23 deleterious(0.05) probably_damaging(0.996) TCGA-K4-A54R-01 1 46872020 46872020 C T FAAH Missense_Mutation p.P311S 0.31 deleterious(0.01) benign(0.394) TCGA-K4-A54R-01 1 47280781 47280781 C G CYP4B1 Silent p.L306L 0.23 TCGA-K4-A54R-01 1 47717384 47717384 G C STIL Silent p.L1097L 0.26 TCGA-K4-A54R-01 1 48694868 48694868 C T SLC5A9 Intron 0.36 TCGA-K4-A54R-01 1 5923453 5923453 C T NPHP4 Missense_Mutation p.E1385K 0.26 deleterious(0) probably_damaging(0.953) TCGA-K4-A54R-01 1 6170532 6170532 G C CHD5 Silent p.L1768L 0.20 TCGA-K4-A54R-01 1 6535141 6535141 C G PLEKHG5 Missense_Mutation p.E169Q 0.25 deleterious(0) benign(0.295) TCGA-K4-A54R-01 1 65352017 65352017 G A JAK1 5'UTR 0.23 TCGA-K4-A54R-01 1 6694615 6694615 G A DNAJC11 3'UTR 0.26 TCGA-K4-A54R-01 1 67890862 67890862 C A SERBP1 Missense_Mutation p.R170I 0.35 tolerated(0.1) probably_damaging(0.997) TCGA-K4-A54R-01 1 68960144 68960144 C G DEPDC1 Missense_Mutation p.E95Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 1 7887205 7887205 C T PER3 Missense_Mutation p.S731L 0.23 tolerated(0.18) benign(0) TCGA-K4-A54R-01 1 7910977 7910977 G T UTS2 Missense_Mutation p.H52N 0.21 deleterious(0.04) benign(0.006) TCGA-K4-A54R-01 1 84610162 84610162 G A PRKACB Missense_Mutation p.D40N 0.42 tolerated(0.35) benign(0) TCGA-K4-A54R-01 1 85486794 85486794 G A MCOLN3 Missense_Mutation p.L496F 0.50 deleterious(0.03) probably_damaging(0.997) TCGA-K4-A54R-01 1 85598547 85598547 C G WDR63 Missense_Mutation p.Q848E 0.45 tolerated(0.68) benign(0.004) TCGA-K4-A54R-01 1 877552 877552 G C SAMD11 Missense_Mutation p.Q302H 0.16 deleterious(0) possibly_damaging(0.687) TCGA-K4-A54R-01 1 89448750 89448750 C A RBMXL1 Missense_Mutation p.D254Y 0.46 tolerated(0.2) possibly_damaging(0.873) TCGA-K4-A54R-01 1 94461693 94461693 C T ABCA4 Missense_Mutation p.R2263Q 0.37 deleterious(0.02) benign(0.34) TCGA-K4-A54R-01 1 984734 984734 G A AGRN Missense_Mutation p.E1473K 0.27 deleterious(0.01) possibly_damaging(0.837) TCGA-K4-A54R-01 20 17489571 17489571 G A BFSP1 Missense_Mutation p.S233F 0.25 tolerated(0.16) possibly_damaging(0.534) TCGA-K4-A54R-01 20 18296069 18296069 C G ZNF133 Missense_Mutation p.Q191E 0.26 tolerated(0.13) benign(0.004) TCGA-K4-A54R-01 20 25203475 25203475 G A ENTPD6 Silent p.A349A 0.29 TCGA-K4-A54R-01 20 2591227 2591227 G A TMC2 Missense_Mutation p.D526N 0.14 deleterious(0.03) probably_damaging(0.985) TCGA-K4-A54R-01 20 2638760 2638760 G A NOP56 Silent p.K535K 0.36 TCGA-K4-A54R-01 20 278845 278845 G A ZCCHC3 Silent p.Q206Q 0.24 TCGA-K4-A54R-01 20 30681765 30681765 G C HCK Missense_Mutation p.A398P 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-K4-A54R-01 20 30804924 30804924 G T POFUT1 Intron 0.27 TCGA-K4-A54R-01 20 31815349 31815349 G C BPIFA3 Missense_Mutation p.E231Q 0.30 tolerated_low_confidence(0.52) benign(0.122) TCGA-K4-A54R-01 20 33508913 33508913 C G ACSS2 Silent p.L429L 0.31 TCGA-K4-A54R-01 20 33680544 33680544 C A TRPC4AP Missense_Mutation p.R14L 0.38 deleterious_low_confidence(0) unknown(0) TCGA-K4-A54R-01 20 34219273 34219273 C T CPNE1 Missense_Mutation p.E245K 0.23 tolerated(0.06) benign(0.003) TCGA-K4-A54R-01 20 35507497 35507497 C G TLDC2 Missense_Mutation p.F81L 0.30 deleterious(0) possibly_damaging(0.755) TCGA-K4-A54R-01 20 36641452 36641452 G C TTI1 Nonsense_Mutation p.S256* 0.27 TCGA-K4-A54R-01 20 3675379 3675379 G T SIGLEC1 Missense_Mutation p.H959N 0.40 deleterious(0) probably_damaging(0.995) TCGA-K4-A54R-01 20 40044127 40044127 C G CHD6 Missense_Mutation p.G2213A 0.30 tolerated_low_confidence(0.25) probably_damaging(0.998) TCGA-K4-A54R-01 20 40790103 40790103 C G PTPRT Missense_Mutation p.E857D 0.33 tolerated(0.45) benign(0.251) TCGA-K4-A54R-01 20 42213644 42213644 C A SGK2 Silent p.I424I 0.37 TCGA-K4-A54R-01 20 43129844 43129844 C T SERINC3 Missense_Mutation p.E385K 0.22 tolerated(0.66) possibly_damaging(0.854) TCGA-K4-A54R-01 20 43541315 43541315 G C PABPC1L Missense_Mutation p.D70H 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-K4-A54R-01 20 45771742 45771742 G C EYA2 Missense_Mutation p.M311I 0.26 deleterious(0.03) probably_damaging(0.984) TCGA-K4-A54R-01 20 47990828 47990828 C T KCNB1 Silent p.Q423Q 0.27 TCGA-K4-A54R-01 20 48256253 48256253 G A B4GALT5 Silent p.F293F 0.22 TCGA-K4-A54R-01 20 49575935 49575935 C T MOCS3 Missense_Mutation p.R186C 0.30 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 20 50400866 50400866 C T SALL4 Missense_Mutation p.D1034N 0.23 deleterious(0.04) possibly_damaging(0.694) TCGA-K4-A54R-01 20 52789519 52789519 C T CYP24A1 Silent p.P126P 0.28 TCGA-K4-A54R-01 20 54824697 54824697 C G MC3R Missense_Mutation p.I266M 0.22 tolerated(0.11) probably_damaging(0.991) TCGA-K4-A54R-01 20 55918416 55918416 C G SPO11 Missense_Mutation p.S364C 0.28 tolerated(0.19) benign(0.013) TCGA-K4-A54R-01 20 5958616 5958616 C G MCM8 Missense_Mutation p.S497C 0.30 deleterious(0) possibly_damaging(0.869) TCGA-K4-A54R-01 20 60907461 60907461 C T LAMA5 Silent p.V1173V 0.23 TCGA-K4-A54R-01 20 61143444 61143444 C T C20orf166 5'Flank 0.20 TCGA-K4-A54R-01 20 61167741 61167741 C G C20orf166 Missense_Mutation p.Q71E 0.26 deleterious_low_confidence(0) benign(0.092) TCGA-K4-A54R-01 20 62366842 62366842 G A ZGPAT Silent p.Q461Q 0.33 TCGA-K4-A54R-01 20 62367344 62367344 G A ZGPAT 3'UTR 0.27 TCGA-K4-A54R-01 20 62517383 62517383 C T TPD52L2 Missense_Mutation p.S164L 0.31 tolerated(0.17) benign(0.032) TCGA-K4-A54R-01 20 8637884 8637884 C T PLCB1 Silent p.L216L 0.24 TCGA-K4-A54R-01 20 9538374 9538374 C T PAK7 Missense_Mutation p.E542K 0.39 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 21 10933894 10933894 C G TPTE Missense_Mutation p.D329H 0.12 tolerated(0.08) possibly_damaging(0.819) TCGA-K4-A54R-01 21 22906904 22906904 G A NCAM2 Missense_Mutation p.E777K 0.15 deleterious(0) benign(0.11) TCGA-K4-A54R-01 21 27423510 27423510 C G APP Splice_Site p.X157_splice 0.33 TCGA-K4-A54R-01 21 34924890 34924890 A T SON Missense_Mutation p.Y1118F 0.30 benign(0.153) TCGA-K4-A54R-01 21 37620707 37620707 G C DOPEY2 Missense_Mutation p.L1613F 0.28 deleterious(0) possibly_damaging(0.821) TCGA-K4-A54R-01 21 38098572 38098572 C G SIM2 Missense_Mutation p.F232L 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A54R-01 21 38858903 38858903 G C DYRK1A Missense_Mutation p.M217I 0.32 tolerated(0.19) benign(0.419) TCGA-K4-A54R-01 21 41033251 41033251 C G B3GALT5 Missense_Mutation p.I255M 0.31 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 21 43867359 43867359 G C UBASH3A 3'UTR 0.28 TCGA-K4-A54R-01 21 45209497 45209497 C A RRP1 5'UTR 0.31 TCGA-K4-A54R-01 21 45844773 45844773 G A TRPM2 Silent p.R1196R 0.41 TCGA-K4-A54R-01 22 17071845 17071845 G A CCT8L2 Silent p.I532I 0.23 TCGA-K4-A54R-01 22 18021897 18021897 G A CECR2 Missense_Mutation p.E668K 0.20 deleterious(0) possibly_damaging(0.542) TCGA-K4-A54R-01 22 18846059 18846059 C T BCRP7 RNA 0.10 TCGA-K4-A54R-01 22 19492955 19492955 G A CDC45 Missense_Mutation p.E291K 0.13 deleterious(0.01) benign(0.405) TCGA-K4-A54R-01 22 19492957 19492957 G A CDC45 Silent p.E291E 0.15 TCGA-K4-A54R-01 22 19492958 19492958 G A CDC45 Missense_Mutation p.E292K 0.14 tolerated(0.07) benign(0.297) TCGA-K4-A54R-01 22 20721872 20721872 C T USP41 Missense_Mutation p.C230Y 0.25 deleterious(0.02) possibly_damaging(0.723) TCGA-K4-A54R-01 22 20909268 20909268 G A MED15 Missense_Mutation p.G95E 0.29 deleterious(0.05) unknown(0) TCGA-K4-A54R-01 22 20918864 20918864 G T MED15 Missense_Mutation p.Q193H 0.54 tolerated_low_confidence(0.07) unknown(0) TCGA-K4-A54R-01 22 21062137 21062137 C G PI4KA 3'UTR 0.40 TCGA-K4-A54R-01 22 21107283 21107283 C T PI4KA Silent p.E965E 0.27 TCGA-K4-A54R-01 22 22937377 22937377 C T IGLV3-32 Silent p.I65I 0.20 TCGA-K4-A54R-01 22 25019798 25019798 C T GGT1 Missense_Mutation p.T312M 0.35 deleterious(0.01) possibly_damaging(0.61) TCGA-K4-A54R-01 22 25617444 25617444 C T CRYBB2 Silent p.N16N 0.27 TCGA-K4-A54R-01 22 26423352 26423352 C G MYO18B Nonsense_Mutation p.S2471* 0.31 TCGA-K4-A54R-01 22 26776254 26776254 C G SEZ6L Missense_Mutation p.S1023C 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-K4-A54R-01 22 26854482 26854482 C G HPS4 Missense_Mutation p.R592T 0.20 tolerated(0.05) benign(0.268) TCGA-K4-A54R-01 22 31854508 31854508 C T EIF4ENIF1 Missense_Mutation p.D306N 0.29 tolerated(0.08) probably_damaging(0.997) TCGA-K4-A54R-01 22 31854514 31854514 C T EIF4ENIF1 Missense_Mutation p.D304N 0.29 tolerated(0.11) benign(0.005) TCGA-K4-A54R-01 22 31971229 31971229 G A SFI1 Missense_Mutation p.R312Q 0.24 tolerated(0.76) benign(0.004) TCGA-K4-A54R-01 22 32651297 32651297 G T SLC5A4 Missense_Mutation p.P7H 0.23 deleterious(0) probably_damaging(0.914) TCGA-K4-A54R-01 22 35717979 35717979 G A TOM1 Silent p.K55K 0.23 TCGA-K4-A54R-01 22 37213050 37213050 C T PVALB 5'UTR 0.25 TCGA-K4-A54R-01 22 37407054 37407054 G A TST 3'UTR 0.23 TCGA-K4-A54R-01 22 38150986 38150986 G T TRIOBP Nonsense_Mutation p.E1828* 0.26 TCGA-K4-A54R-01 22 38522380 38522380 C T PLA2G6 Silent p.R475R 0.22 TCGA-K4-A54R-01 22 39144722 39144722 C T SUN2 Silent p.T248T 0.31 TCGA-K4-A54R-01 22 40804653 40804653 G C SGSM3 Missense_Mutation p.R602T 0.27 deleterious(0) possibly_damaging(0.756) TCGA-K4-A54R-01 22 41574076 41574076 C T EP300 Nonsense_Mutation p.Q2121* 0.28 TCGA-K4-A54R-01 22 41601388 41601388 G A L3MBTL2 Missense_Mutation p.E8K 0.30 tolerated_low_confidence(0.26) possibly_damaging(0.899) TCGA-K4-A54R-01 22 45689102 45689102 G A UPK3A Silent p.R204R 0.29 TCGA-K4-A54R-01 2 108994929 108994929 G C SULT1C4 Missense_Mutation p.D46H 0.27 deleterious(0) probably_damaging(0.993) TCGA-K4-A54R-01 2 109356991 109356991 G C RANBP2 Missense_Mutation p.E277Q 0.24 deleterious(0) benign(0.002) TCGA-K4-A54R-01 2 109524402 109524402 C T EDAR Missense_Mutation p.D293N 0.26 tolerated(0.1) probably_damaging(0.993) TCGA-K4-A54R-01 2 110889358 110889358 C T NPHP1 Missense_Mutation p.E570K 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A54R-01 2 111881473 111881473 G A BCL2L11 Missense_Mutation p.E51K 0.41 deleterious(0.04) benign(0.054) TCGA-K4-A54R-01 2 113346425 113346425 G T CHCHD5 Intron 0.30 TCGA-K4-A54R-01 2 113420668 113420668 G C SLC20A1 3'UTR 0.31 TCGA-K4-A54R-01 2 113420672 113420672 G C SLC20A1 3'UTR 0.21 TCGA-K4-A54R-01 2 113831924 113831924 G A IL1F10 Silent p.Q17Q 0.22 TCGA-K4-A54R-01 2 113832424 113832424 G A IL1F10 Silent p.L81L 0.26 TCGA-K4-A54R-01 2 113832741 113832741 G A IL1F10 Missense_Mutation p.E87K 0.27 tolerated(0.34) possibly_damaging(0.762) TCGA-K4-A54R-01 2 116548709 116548709 G A DPP10 Silent p.K532K 0.24 TCGA-K4-A54R-01 2 120125487 120125487 C G DBI Intron 0.25 TCGA-K4-A54R-01 2 120197788 120197788 C T SCTR Missense_Mutation p.E410K 0.24 tolerated(0.3) benign(0.007) TCGA-K4-A54R-01 2 121726296 121726296 G A GLI2 Missense_Mutation p.R217H 0.28 deleterious(0) probably_damaging(0.996) TCGA-K4-A54R-01 2 122042677 122042677 G A TFCP2L1 Silent p.F3F 0.46 TCGA-K4-A54R-01 2 128392778 128392778 G C MYO7B Missense_Mutation p.D1907H 0.23 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 2 128700017 128700017 C T SAP130 Missense_Mutation p.R1025Q 0.31 tolerated_low_confidence(0.1) probably_damaging(0.915) TCGA-K4-A54R-01 2 12880800 12880800 C T TRIB2 Silent p.D304D 0.17 TCGA-K4-A54R-01 2 135711499 135711499 G A CCNT2 Missense_Mutation p.E492K 0.24 deleterious(0.01) benign(0.242) TCGA-K4-A54R-01 2 141609294 141609294 G C LRP1B Missense_Mutation p.I1546M 0.30 benign(0.02) TCGA-K4-A54R-01 2 142567929 142567929 G C LRP1B Missense_Mutation p.H42D 0.36 possibly_damaging(0.537) TCGA-K4-A54R-01 2 152470907 152470907 C T NEB Silent p.K3828K 0.29 TCGA-K4-A54R-01 2 154335019 154335019 C T RPRM Missense_Mutation p.E21K 0.32 tolerated(0.06) benign(0.005) TCGA-K4-A54R-01 2 157435459 157435459 C G GPD2 Nonsense_Mutation p.S609* 0.30 TCGA-K4-A54R-01 2 160901455 160901455 G C PLA2R1 Missense_Mutation p.S108C 0.32 deleterious(0.01) probably_damaging(0.95) TCGA-K4-A54R-01 2 163230013 163230013 G C KCNH7 Missense_Mutation p.I1097M 0.30 tolerated(0.08) benign(0.031) TCGA-K4-A54R-01 2 165353579 165353579 G A GRB14 Missense_Mutation p.H441Y 0.31 deleterious(0.03) probably_damaging(0.953) TCGA-K4-A54R-01 2 166221650 166221650 C T SCN2A Intron 0.22 TCGA-K4-A54R-01 2 16743320 16743320 C G FAM49A Missense_Mutation p.E130Q 0.38 tolerated(1) benign(0.002) TCGA-K4-A54R-01 2 168103117 168103117 G T XIRP2 Nonsense_Mutation p.E1739* 0.23 TCGA-K4-A54R-01 2 168104042 168104042 C G XIRP2 Missense_Mutation p.S2047C 0.27 benign(0.323) TCGA-K4-A54R-01 2 168115298 168115298 G A XIRP2 3'UTR 0.33 TCGA-K4-A54R-01 2 176965440 176965440 G A HOXD12 Missense_Mutation p.M255I 0.24 deleterious(0) probably_damaging(0.989) TCGA-K4-A54R-01 2 179433944 179433944 C G TTN Missense_Mutation p.E25639Q 0.23 TCGA-K4-A54R-01 2 179629377 179629377 G A TTN Missense_Mutation p.H3289Y 0.29 TCGA-K4-A54R-01 2 179629518 179629518 G C TTN Missense_Mutation p.L3242V 0.15 TCGA-K4-A54R-01 2 179639676 179639676 G A TTN Silent p.V2254V 0.27 TCGA-K4-A54R-01 2 191929651 191929651 C G STAT4 Missense_Mutation p.E222Q 0.22 tolerated(0.57) possibly_damaging(0.837) TCGA-K4-A54R-01 2 196740421 196740421 G A DNAH7 Silent p.I2088I 0.22 TCGA-K4-A54R-01 2 197629246 197629246 C T GTF3C3 3'UTR 0.25 TCGA-K4-A54R-01 2 197863665 197863665 C T ANKRD44 Missense_Mutation p.M852I 0.22 deleterious(0.03) benign(0.096) TCGA-K4-A54R-01 2 204055101 204055101 C G NBEAL1 Missense_Mutation p.Q2275E 0.30 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 2 208606962 208606962 G C CCNYL1 Missense_Mutation p.E128Q 0.54 tolerated(0.24) benign(0.014) TCGA-K4-A54R-01 2 211320015 211320015 G C LANCL1 Missense_Mutation p.L75V 0.50 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 2 219292711 219292711 C T VIL1 Missense_Mutation p.S124F 0.43 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 2 224462210 224462210 G A SCG2 Silent p.L597L 0.43 TCGA-K4-A54R-01 2 231079726 231079726 G A SP110 Silent p.F85F 0.40 TCGA-K4-A54R-01 2 24110718 24110718 C G ATAD2B Missense_Mutation p.D186H 0.26 deleterious(0) probably_damaging(0.938) TCGA-K4-A54R-01 2 242202139 242202139 C G HDLBP Missense_Mutation p.R146T 0.47 tolerated(0.34) benign(0.004) TCGA-K4-A54R-01 2 24518535 24518535 G A ITSN2 Nonsense_Mutation p.Q545* 0.30 TCGA-K4-A54R-01 2 24518661 24518661 G A ITSN2 Nonsense_Mutation p.Q503* 0.30 TCGA-K4-A54R-01 2 25458586 25458586 C T DNMT3A Missense_Mutation p.E863K 0.32 deleterious(0) probably_damaging(0.996) TCGA-K4-A54R-01 2 27375555 27375555 G A TCF23 Splice_Site p.X156_splice 0.23 TCGA-K4-A54R-01 2 28113131 28113131 G A RBKS Silent p.L28L 0.21 TCGA-K4-A54R-01 2 32379464 32379464 G A SPAST Missense_Mutation p.D584N 0.31 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 2 32429704 32429704 G C SLC30A6 Missense_Mutation p.L277F 0.26 tolerated(0.09) benign(0.02) TCGA-K4-A54R-01 2 32726904 32726904 G C BIRC6 Missense_Mutation p.M3052I 0.33 benign(0.001) TCGA-K4-A54R-01 2 37579929 37579929 C G QPCT Intron 0.24 TCGA-K4-A54R-01 2 43452318 43452318 C T ZFP36L2 Missense_Mutation p.G209R 0.34 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 2 48027550 48027550 G A MSH6 Missense_Mutation p.E810K 0.37 tolerated(0.21) benign(0.111) TCGA-K4-A54R-01 2 55214800 55214800 C G RTN4 Missense_Mutation p.K1016N 0.38 deleterious(0.01) probably_damaging(0.967) TCGA-K4-A54R-01 2 63058251 63058251 G A EHBP1 Missense_Mutation p.E198K 0.24 tolerated(0.3) benign(0.19) TCGA-K4-A54R-01 2 63092028 63092028 G A EHBP1 Missense_Mutation p.R342K 0.28 tolerated(0.38) benign(0.2) TCGA-K4-A54R-01 2 63631226 63631226 G C WDPCP Silent p.L464L 0.32 TCGA-K4-A54R-01 2 65237850 65237850 C T SLC1A4 Silent p.F251F 0.26 TCGA-K4-A54R-01 2 65298907 65298907 C A CEP68 Missense_Mutation p.S226Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-K4-A54R-01 2 67632391 67632391 C T ETAA1 Silent p.V859V 0.44 TCGA-K4-A54R-01 2 69746301 69746301 G C AAK1 Missense_Mutation p.L428V 0.38 tolerated(0.2) unknown(0) TCGA-K4-A54R-01 2 72606943 72606943 C G EXOC6B Missense_Mutation p.L679F 0.33 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 2 73492622 73492622 G A FBXO41 Missense_Mutation p.S451L 0.45 tolerated(0.65) benign(0.009) TCGA-K4-A54R-01 2 73676026 73676026 C T ALMS1 Missense_Mutation p.S790L 0.30 benign(0.17) TCGA-K4-A54R-01 2 73868208 73868208 G A NAT8 Missense_Mutation p.S183F 0.23 deleterious(0.04) possibly_damaging(0.811) TCGA-K4-A54R-01 2 74710090 74710090 C T CCDC142 5'UTR 0.46 TCGA-K4-A54R-01 2 85818940 85818940 G C VAMP5 Silent p.V32V 0.28 TCGA-K4-A54R-01 2 85823747 85823747 G A RNF181 Silent p.R64R 0.22 TCGA-K4-A54R-01 2 86371723 86371723 C G IMMT Missense_Mutation p.D649H 0.34 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 2 89197201 89197201 C T IGKV5-2 Silent p.F82F 0.27 TCGA-K4-A54R-01 2 9634907 9634907 G C ADAM17 Intron 0.27 TCGA-K4-A54R-01 2 96789738 96789738 G A ASTL Nonsense_Mutation p.Q383* 0.28 TCGA-K4-A54R-01 2 97530560 97530560 G T SEMA4C Silent p.R282R 0.26 TCGA-K4-A54R-01 2 97849204 97849204 C T ANKRD36 Nonsense_Mutation p.Q616* 0.33 TCGA-K4-A54R-01 2 98413397 98413397 C G TMEM131 Missense_Mutation p.E975Q 0.27 tolerated(0.08) probably_damaging(0.997) TCGA-K4-A54R-01 2 99152287 99152287 C G INPP4A Silent p.V122V 0.31 TCGA-K4-A54R-01 2 99901155 99901155 C T LYG1 Silent p.L154L 0.29 TCGA-K4-A54R-01 2 99993064 99993064 G T EIF5B Nonsense_Mutation p.E603* 0.26 TCGA-K4-A54R-01 3 100174713 100174713 G A LNP1 Silent p.R160R 0.26 TCGA-K4-A54R-01 3 10379929 10379929 G A ATP2B2 Silent p.D1117D 0.30 TCGA-K4-A54R-01 3 107096490 107096490 C T CCDC54 Missense_Mutation p.S19L 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-K4-A54R-01 3 108135694 108135694 C A MYH15 Nonsense_Mutation p.E1325* 0.25 TCGA-K4-A54R-01 3 108725917 108725917 C T MORC1 Missense_Mutation p.E576K 0.28 tolerated(0.46) benign(0) TCGA-K4-A54R-01 3 111638003 111638003 G A PHLDB2 Missense_Mutation p.E602K 0.30 deleterious(0.03) benign(0.052) TCGA-K4-A54R-01 3 113375700 113375700 C T KIAA2018 Missense_Mutation p.R1610K 0.35 probably_damaging(0.99) TCGA-K4-A54R-01 3 113375963 113375963 C T KIAA2018 Silent p.Q1522Q 0.25 TCGA-K4-A54R-01 3 113378828 113378828 C T KIAA2018 Missense_Mutation p.M567I 0.22 benign(0.002) TCGA-K4-A54R-01 3 119456230 119456230 G C MAATS1 Missense_Mutation p.K454N 0.36 deleterious(0.02) benign(0.299) TCGA-K4-A54R-01 3 120315375 120315375 C G NDUFB4 Missense_Mutation p.R57G 0.33 tolerated(0.09) possibly_damaging(0.71) TCGA-K4-A54R-01 3 121187186 121187186 G C POLQ Missense_Mutation p.Q2271E 0.29 tolerated(0.05) benign(0.219) TCGA-K4-A54R-01 3 12208791 12208791 G C SYN2 RNA 0.22 TCGA-K4-A54R-01 3 12208804 12208804 G A SYN2 RNA 0.33 TCGA-K4-A54R-01 3 126260809 126260809 C T CHST13 Silent p.I138I 0.30 TCGA-K4-A54R-01 3 128991739 128991739 G C COPG1 Missense_Mutation p.E750Q 0.31 deleterious(0.01) benign(0.415) TCGA-K4-A54R-01 3 131271331 131271331 G A CPNE4 Missense_Mutation p.S374F 0.28 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 3 13363094 13363094 C G NUP210 Missense_Mutation p.E1719D 0.36 tolerated(0.24) benign(0.001) TCGA-K4-A54R-01 3 136045663 136045663 C T PCCB Missense_Mutation p.S390L 0.22 deleterious_low_confidence(0) possibly_damaging(0.752) TCGA-K4-A54R-01 3 141259401 141259401 G C RASA2 Silent p.L159L 0.33 TCGA-K4-A54R-01 3 141526643 141526643 C G GRK7 Missense_Mutation p.L403V 0.40 tolerated(1) benign(0.014) TCGA-K4-A54R-01 3 142119370 142119370 G C XRN1 Nonsense_Mutation p.S708* 0.27 TCGA-K4-A54R-01 3 142720498 142720498 C G U2SURP Missense_Mutation p.Q10E 0.21 tolerated_low_confidence(0.05) benign(0.072) TCGA-K4-A54R-01 3 149238751 149238751 C T WWTR1 Missense_Mutation p.M348I 0.32 tolerated(0.07) benign(0.001) TCGA-K4-A54R-01 3 149678769 149678769 G C RNF13 Missense_Mutation p.E342Q 0.33 tolerated(0.19) possibly_damaging(0.575) TCGA-K4-A54R-01 3 153998570 153998570 C T DHX36 Missense_Mutation p.E820K 0.24 tolerated(1) benign(0.002) TCGA-K4-A54R-01 3 154145441 154145441 G C GPR149 Missense_Mutation p.F346L 0.26 tolerated(1) benign(0.001) TCGA-K4-A54R-01 3 157081393 157081393 C T VEPH1 Missense_Mutation p.E499K 0.30 tolerated(0.28) benign(0.06) TCGA-K4-A54R-01 3 157841717 157841717 G A RSRC1 Missense_Mutation p.R86H 0.28 tolerated_low_confidence(0.13) unknown(0) TCGA-K4-A54R-01 3 164724689 164724689 C T SI Missense_Mutation p.E1441K 0.50 tolerated(0.45) possibly_damaging(0.582) TCGA-K4-A54R-01 3 168867404 168867404 C T MECOM 5'Flank 0.33 TCGA-K4-A54R-01 3 169496678 169496678 C T MYNN Missense_Mutation p.S130F 0.34 deleterious(0.01) benign(0.188) TCGA-K4-A54R-01 3 169694764 169694764 C G SEC62 Nonsense_Mutation p.S59* 0.20 TCGA-K4-A54R-01 3 172643277 172643277 G C SPATA16 Missense_Mutation p.Q363E 0.30 tolerated(0.11) benign(0.092) TCGA-K4-A54R-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-K4-A54R-01 3 179109794 179109794 G C MFN1 Missense_Mutation p.E725Q 0.32 tolerated(0.19) benign(0.032) TCGA-K4-A54R-01 3 181430441 181430441 G A SOX2 Missense_Mutation p.R98Q 0.27 deleterious(0) probably_damaging(0.968) TCGA-K4-A54R-01 3 184107221 184107221 G A CHRD 3'UTR 0.19 TCGA-K4-A54R-01 3 185905998 185905998 G A DGKG Silent p.C696C 0.25 TCGA-K4-A54R-01 3 186435293 186435293 G A KNG1 5'UTR 0.41 TCGA-K4-A54R-01 3 189584544 189584544 C T TP63 Silent p.I280I 0.22 TCGA-K4-A54R-01 3 194407595 194407595 G A FAM43A Missense_Mutation p.E14K 0.42 deleterious(0.02) possibly_damaging(0.805) TCGA-K4-A54R-01 3 195453330 195453330 G A MUC20 Missense_Mutation p.R619Q 0.15 tolerated(1) unknown(0) TCGA-K4-A54R-01 3 195610085 195610085 G A TNK2 Silent p.L247L 0.27 TCGA-K4-A54R-01 3 195954608 195954608 C T SLC51A Missense_Mutation p.S121L 0.23 tolerated(0.6) benign(0.019) TCGA-K4-A54R-01 3 196865173 196865173 G T DLG1 Missense_Mutation p.S301Y 0.38 deleterious(0.01) possibly_damaging(0.781) TCGA-K4-A54R-01 3 197402011 197402011 C T KIAA0226 Missense_Mutation p.E933K 0.27 tolerated(0.2) unknown(0) TCGA-K4-A54R-01 3 28378243 28378243 C T AZI2 Silent p.Q191Q 0.53 TCGA-K4-A54R-01 3 33558604 33558604 C G CLASP2 Missense_Mutation p.E1292Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A54R-01 3 33886999 33886999 C T PDCD6IP Silent p.I525I 0.32 TCGA-K4-A54R-01 3 36872496 36872496 C T TRANK1 Missense_Mutation p.E2816K 0.25 tolerated(0.13) benign(0.11) TCGA-K4-A54R-01 3 38936441 38936441 G A SCN11A Silent p.F806F 0.20 TCGA-K4-A54R-01 3 43388991 43388991 G C SNRK Missense_Mutation p.D414H 0.36 tolerated(0.29) benign(0.245) TCGA-K4-A54R-01 3 43647311 43647311 C G ANO10 Missense_Mutation p.E12Q 0.41 tolerated(0.23) benign(0.022) TCGA-K4-A54R-01 3 43647345 43647345 C G ANO10 5'UTR 0.33 TCGA-K4-A54R-01 3 44700974 44700974 G T ZNF35 Missense_Mutation p.Q373H 0.33 tolerated(0.11) probably_damaging(1) TCGA-K4-A54R-01 3 46023076 46023076 C G FYCO1 Missense_Mutation p.E50Q 0.24 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 3 46023127 46023127 C T FYCO1 Missense_Mutation p.E33K 0.18 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 3 47891354 47891354 C G DHX30 Intron 0.25 TCGA-K4-A54R-01 3 48482013 48482013 G T TMA7 Silent p.A45A 0.17 TCGA-K4-A54R-01 3 48482025 48482025 G A TMA7 Silent p.G49G 0.17 TCGA-K4-A54R-01 3 49053361 49053361 G C DALRD3 Intron 0.32 TCGA-K4-A54R-01 3 49662512 49662512 G A BSN Missense_Mutation p.R110Q 0.34 unknown(0) TCGA-K4-A54R-01 3 50316587 50316587 G C LSMEM2 Missense_Mutation p.E15Q 0.27 tolerated(0.05) possibly_damaging(0.836) TCGA-K4-A54R-01 3 50330208 50330208 G A IFRD2 5'Flank 0.22 TCGA-K4-A54R-01 3 50386853 50386853 C T NPRL2 Missense_Mutation p.E138K 0.31 tolerated(0.07) benign(0.118) TCGA-K4-A54R-01 3 50396016 50396016 C T TMEM115 Missense_Mutation p.R160Q 0.31 tolerated(0.12) benign(0.091) TCGA-K4-A54R-01 3 52027758 52027758 G A RPL29 3'UTR 0.28 TCGA-K4-A54R-01 3 52027803 52027803 G C RPL29 Missense_Mutation p.P148A 0.23 tolerated(0.05) benign(0.014) TCGA-K4-A54R-01 3 52437315 52437315 C G BAP1 Splice_Site p.X577_splice 0.32 TCGA-K4-A54R-01 3 52529474 52529474 C T STAB1 Silent p.F15F 0.35 TCGA-K4-A54R-01 3 52568794 52568794 C T NT5DC2 5'Flank 0.35 TCGA-K4-A54R-01 3 53125964 53125964 G A RFT1 Silent p.L527L 0.23 TCGA-K4-A54R-01 3 53133432 53133432 G A RFT1 Silent p.F391F 0.24 TCGA-K4-A54R-01 3 53381463 53381463 C G DCP1A Missense_Mutation p.D28H 0.23 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 3 56657184 56657184 G C FAM208A 3'UTR 0.28 TCGA-K4-A54R-01 3 58080568 58080568 G A FLNB Missense_Mutation p.E265K 0.30 deleterious(0) possibly_damaging(0.806) TCGA-K4-A54R-01 3 58413871 58413871 G A PDHB Missense_Mutation p.R324C 0.33 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 3 59999837 59999837 C T FHIT Missense_Mutation p.D49N 0.28 deleterious(0.02) probably_damaging(0.919) TCGA-K4-A54R-01 3 6903453 6903453 C T GRM7 Silent p.L126L 0.31 TCGA-K4-A54R-01 3 69230120 69230120 C G FRMD4B Missense_Mutation p.Q927H 0.30 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 3 77611801 77611801 G A ROBO2 Splice_Site p.X496_splice 0.30 TCGA-K4-A54R-01 3 9094809 9094809 C G SRGAP3 Missense_Mutation p.E409Q 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-K4-A54R-01 3 98307646 98307646 C A CPOX Missense_Mutation p.L288F 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-K4-A54R-01 4 101109325 101109325 C G DDIT4L Splice_Site p.X31_splice 0.24 TCGA-K4-A54R-01 4 103964585 103964585 C G SLC9B2 Missense_Mutation p.K338N 0.25 deleterious(0.03) possibly_damaging(0.517) TCGA-K4-A54R-01 4 113540252 113540252 G A C4orf21 Nonsense_Mutation p.Q316* 0.19 TCGA-K4-A54R-01 4 114899738 114899738 C T ARSJ Missense_Mutation p.D85N 0.23 deleterious(0) probably_damaging(0.986) TCGA-K4-A54R-01 4 123171648 123171648 G C KIAA1109 Missense_Mutation p.D1948H 0.15 probably_damaging(0.999) TCGA-K4-A54R-01 4 124011850 124011850 G C SPATA5 Missense_Mutation p.R777T 0.28 tolerated(0.11) possibly_damaging(0.665) TCGA-K4-A54R-01 4 126336806 126336806 C A FAT4 Missense_Mutation p.Q2230K 0.31 possibly_damaging(0.771) TCGA-K4-A54R-01 4 128865027 128865027 G C MFSD8 Missense_Mutation p.L107V 0.28 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 4 139966385 139966385 G A CCRN4L Silent p.L351L 0.14 TCGA-K4-A54R-01 4 151773884 151773884 G C LRBA Nonsense_Mutation p.S993* 0.19 TCGA-K4-A54R-01 4 155719073 155719073 T C RBM46 Missense_Mutation p.Y88H 0.19 deleterious(0) benign(0.095) TCGA-K4-A54R-01 4 156135649 156135649 C T NPY2R Silent p.F186F 0.43 TCGA-K4-A54R-01 4 187540255 187540255 G A FAT1 Silent p.N2495N 0.06 TCGA-K4-A54R-01 4 187628572 187628575 CAGC GG FAT1 Frame_Shift_Del p.A803Pfs*14 0.22 TCGA-K4-A54R-01 4 187629053 187629053 C T FAT1 Silent p.L643L 0.15 TCGA-K4-A54R-01 4 39851199 39851199 C T PDS5A Missense_Mutation p.A1054T 0.39 deleterious(0.02) benign(0.003) TCGA-K4-A54R-01 4 40122579 40122579 G A N4BP2 Missense_Mutation p.E950K 0.47 deleterious(0) possibly_damaging(0.51) TCGA-K4-A54R-01 4 42895440 42895440 G C GRXCR1 Missense_Mutation p.D53H 0.38 deleterious(0.01) benign(0.376) TCGA-K4-A54R-01 4 47548674 47548674 C T ATP10D Missense_Mutation p.S477F 0.42 deleterious(0.01) benign(0.033) TCGA-K4-A54R-01 4 47548725 47548725 C - ATP10D Frame_Shift_Del p.A494Efs*31 0.29 TCGA-K4-A54R-01 4 52861101 52861101 C T LRRC66 Missense_Mutation p.C696Y 0.14 tolerated(0.26) benign(0.002) TCGA-K4-A54R-01 4 52883545 52883545 G C LRRC66 Missense_Mutation p.H79D 0.10 tolerated(0.06) benign(0.025) TCGA-K4-A54R-01 4 68934477 68934477 C G TMPRSS11F Missense_Mutation p.R205T 0.20 deleterious(0) possibly_damaging(0.632) TCGA-K4-A54R-01 4 69512792 69512792 C T UGT2B15 3'UTR 0.34 TCGA-K4-A54R-01 4 69683744 69683744 C G UGT2B10 Intron 0.20 TCGA-K4-A54R-01 4 70620436 70620436 C T SULT1B1 Missense_Mutation p.E77K 0.35 tolerated(0.91) benign(0.002) TCGA-K4-A54R-01 4 76721522 76721522 G C USO1 Missense_Mutation p.E537Q 0.46 tolerated(0.19) benign(0.257) TCGA-K4-A54R-01 4 77253645 77253645 C G CCDC158 Splice_Site p.X937_splice 0.28 TCGA-K4-A54R-01 4 79791990 79791990 C T BMP2K Nonsense_Mutation p.Q429* 0.41 TCGA-K4-A54R-01 4 79847863 79847863 G C PAQR3 Missense_Mutation p.Q172E 0.38 tolerated(0.15) benign(0.034) TCGA-K4-A54R-01 4 8217903 8217903 G A SH3TC1 Missense_Mutation p.E183K 0.46 tolerated(0.05) possibly_damaging(0.779) TCGA-K4-A54R-01 4 83984258 83984258 C G COPS4 Missense_Mutation p.L249V 0.31 deleterious(0) probably_damaging(0.986) TCGA-K4-A54R-01 4 84367990 84367990 C T HELQ Missense_Mutation p.E464K 0.31 deleterious(0.04) possibly_damaging(0.832) TCGA-K4-A54R-01 4 85707275 85707275 C T WDFY3 Missense_Mutation p.E1307K 0.35 tolerated(0.09) benign(0.048) TCGA-K4-A54R-01 4 86916433 86916433 G A ARHGAP24 Missense_Mutation p.M542I 0.20 tolerated(0.46) benign(0.007) TCGA-K4-A54R-01 4 87643506 87643506 C G PTPN13 Missense_Mutation p.I509M 0.12 tolerated(0.18) benign(0.037) TCGA-K4-A54R-01 4 89199353 89199353 C A PPM1K Missense_Mutation p.G128V 0.15 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 4 94376858 94376858 G A GRID2 Missense_Mutation p.E531K 0.13 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 4 99300208 99300208 G T RAP1GDS1 Missense_Mutation p.Q135H 0.23 tolerated(0.2) benign(0.001) TCGA-K4-A54R-01 5 121330348 121330348 G A SRFBP1 Missense_Mutation p.E85K 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-K4-A54R-01 5 137222919 137222919 C G MYOT Missense_Mutation p.L448V 0.45 tolerated(0.82) benign(0) TCGA-K4-A54R-01 5 13886135 13886135 G C DNAH5 Missense_Mutation p.S894C 0.21 possibly_damaging(0.7) TCGA-K4-A54R-01 5 139508082 139508082 G A IGIP Missense_Mutation p.M7I 0.58 deleterious_low_confidence(0) benign(0.001) TCGA-K4-A54R-01 5 140730097 140730097 G A PCDHGB1 Silent p.E90E 0.40 TCGA-K4-A54R-01 5 141248533 141248533 G A PCDH1 Silent p.F168F 0.38 TCGA-K4-A54R-01 5 147582561 147582561 C T SPINK6 5'UTR 0.50 TCGA-K4-A54R-01 5 150924697 150924697 C G FAT2 Missense_Mutation p.L1997F 0.50 benign(0.248) TCGA-K4-A54R-01 5 156929813 156929813 C G ADAM19 Missense_Mutation p.E436Q 0.46 deleterious(0.02) possibly_damaging(0.499) TCGA-K4-A54R-01 5 172661934 172661934 G C NKX2-5 Missense_Mutation p.F51L 0.27 tolerated(0.79) possibly_damaging(0.827) TCGA-K4-A54R-01 5 173317475 173317475 C T CPEB4 Nonsense_Mutation p.Q247* 0.34 TCGA-K4-A54R-01 5 174077 174077 G C PLEKHG4B Missense_Mutation p.L1066F 0.53 deleterious(0) probably_damaging(0.912) TCGA-K4-A54R-01 5 21459805 21459805 C T GUSBP1 RNA 0.26 TCGA-K4-A54R-01 5 24505311 24505311 G A CDH10 Missense_Mutation p.H435Y 0.44 tolerated(0.07) benign(0.001) TCGA-K4-A54R-01 5 33997443 33997443 C T AMACR Intron 0.26 TCGA-K4-A54R-01 5 34936330 34936330 G A DNAJC21 Missense_Mutation p.D133N 0.26 tolerated(0.13) benign(0.008) TCGA-K4-A54R-01 5 36219779 36219779 G A NADK2 Missense_Mutation p.S188F 0.37 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 5 37183261 37183261 C A C5orf42 Missense_Mutation p.M1674I 0.29 deleterious(0.04) benign(0.048) TCGA-K4-A54R-01 5 37183356 37183356 C G C5orf42 Missense_Mutation p.E1643Q 0.18 deleterious(0.03) possibly_damaging(0.809) TCGA-K4-A54R-01 5 38406333 38406333 C T EGFLAM Missense_Mutation p.S273F 0.21 tolerated_low_confidence(1) benign(0.005) TCGA-K4-A54R-01 5 38481666 38481666 G C LIFR 3'UTR 0.19 TCGA-K4-A54R-01 5 41000436 41000436 C G MROH2B Missense_Mutation p.L1456F 0.34 tolerated(0.16) probably_damaging(0.983) TCGA-K4-A54R-01 5 43245863 43245863 G A NIM1K 5'UTR 0.25 TCGA-K4-A54R-01 5 44815143 44815143 A T MRPS30 Missense_Mutation p.N387Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 5 54420851 54420851 G C CDC20B Nonsense_Mutation p.S332* 0.52 TCGA-K4-A54R-01 5 55034828 55034828 C T DDX4 Missense_Mutation p.H13Y 0.19 deleterious_low_confidence(0.05) benign(0.285) TCGA-K4-A54R-01 5 66389982 66389982 C T MAST4 Intron 0.33 TCGA-K4-A54R-01 5 68470887 68470887 C G CCNB1 Missense_Mutation p.L297V 0.41 deleterious(0.01) possibly_damaging(0.768) TCGA-K4-A54R-01 5 74639705 74639705 C G HMGCR Missense_Mutation p.L65V 0.45 deleterious(0.01) possibly_damaging(0.799) TCGA-K4-A54R-01 5 77423861 77423861 A G AP3B1 Missense_Mutation p.I654T 0.41 tolerated(0.11) benign(0.014) TCGA-K4-A54R-01 5 77784877 77784877 C G LHFPL2 Missense_Mutation p.G177A 0.41 tolerated(0.54) benign(0.129) TCGA-K4-A54R-01 5 77784954 77784954 C G LHFPL2 Missense_Mutation p.L151F 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-K4-A54R-01 5 78610332 78610332 C T JMY Missense_Mutation p.L773F 0.42 tolerated(0.7) possibly_damaging(0.795) TCGA-K4-A54R-01 5 80911320 80911320 G T SSBP2 Nonsense_Mutation p.S85* 0.40 TCGA-K4-A54R-01 5 82837484 82837484 G C VCAN Missense_Mutation p.E2888Q 0.37 deleterious(0.01) benign(0.342) TCGA-K4-A54R-01 5 90124773 90124773 G A GPR98 Missense_Mutation p.E5461K 0.36 possibly_damaging(0.636) TCGA-K4-A54R-01 6 101103593 101103593 G A ASCC3 Silent p.I935I 0.30 TCGA-K4-A54R-01 6 109321781 109321781 C G SESN1 Missense_Mutation p.E214D 0.34 tolerated(0.55) benign(0.013) TCGA-K4-A54R-01 6 109481818 109481818 C T CEP57L1 Missense_Mutation p.H354Y 0.34 tolerated(1) benign(0.013) TCGA-K4-A54R-01 6 110423400 110423400 C A WASF1 Nonsense_Mutation p.E305* 0.27 TCGA-K4-A54R-01 6 110729593 110729593 G C DDO Silent p.L103L 0.21 TCGA-K4-A54R-01 6 111346769 111346769 G C RPF2 Missense_Mutation p.R302T 0.30 deleterious(0.01) benign(0.287) TCGA-K4-A54R-01 6 111913106 111913106 G C TRAF3IP2 Missense_Mutation p.Q62E 0.19 tolerated_low_confidence(0.36) benign(0.002) TCGA-K4-A54R-01 6 117923471 117923471 C T GOPC 5'UTR 0.41 TCGA-K4-A54R-01 6 123126094 123126094 C G SMPDL3A Missense_Mutation p.S260C 0.29 tolerated(0.16) possibly_damaging(0.704) TCGA-K4-A54R-01 6 12934065 12934065 C T PHACTR1 Nonsense_Mutation p.Q151* 0.27 TCGA-K4-A54R-01 6 134495776 134495776 C T SGK1 Intron 0.36 TCGA-K4-A54R-01 6 13625942 13625942 G A RANBP9 Nonsense_Mutation p.Q668* 0.41 TCGA-K4-A54R-01 6 143091090 143091090 C G HIVEP2 Missense_Mutation p.E1596Q 0.29 tolerated(0.24) benign(0.316) TCGA-K4-A54R-01 6 146720733 146720733 C G GRM1 Missense_Mutation p.S853C 0.30 deleterious(0) probably_damaging(0.99) TCGA-K4-A54R-01 6 152560832 152560832 G T SYNE1 Missense_Mutation p.Q6635K 0.43 possibly_damaging(0.727) TCGA-K4-A54R-01 6 15513614 15513614 G A JARID2 Silent p.R1137R 0.53 TCGA-K4-A54R-01 6 155153580 155153580 C T SCAF8 Missense_Mutation p.S956L 0.42 deleterious_low_confidence(0.02) benign(0.194) TCGA-K4-A54R-01 6 155569163 155569163 C T TIAM2 Silent p.L1228L 0.44 TCGA-K4-A54R-01 6 161152246 161152246 G C PLG Missense_Mutation p.E474Q 0.38 tolerated(0.56) benign(0.002) TCGA-K4-A54R-01 6 161507449 161507449 T A MAP3K4 Missense_Mutation p.L804H 0.43 deleterious(0.04) probably_damaging(0.995) TCGA-K4-A54R-01 6 170102739 170102739 G A C6orf120 Missense_Mutation p.E62K 0.17 tolerated(0.06) probably_damaging(0.944) TCGA-K4-A54R-01 6 17629227 17629227 G A NUP153 Missense_Mutation p.S1068L 0.13 tolerated(0.1) benign(0.002) TCGA-K4-A54R-01 6 18197303 18197303 C T KDM1B Nonsense_Mutation p.Q197* 0.22 TCGA-K4-A54R-01 6 20490793 20490793 G A E2F3 3'UTR 0.42 TCGA-K4-A54R-01 6 26031889 26031889 C G HIST1H3B Missense_Mutation p.E134Q 0.21 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-K4-A54R-01 6 26200015 26200015 G A HIST1H2BF Missense_Mutation p.E77K 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-K4-A54R-01 6 26240772 26240772 G A HIST1H4F Missense_Mutation p.R40Q 0.20 deleterious(0.04) probably_damaging(0.945) TCGA-K4-A54R-01 6 27799149 27799149 C A HIST1H4K Nonsense_Mutation p.E53* 0.18 TCGA-K4-A54R-01 6 27860796 27860796 G A HIST1H2AM Silent p.V44V 0.34 TCGA-K4-A54R-01 6 29142223 29142223 C T OR2J2 Nonsense_Mutation p.Q271* 0.37 TCGA-K4-A54R-01 6 29691953 29691953 C G HLA-F Missense_Mutation p.S113C 0.26 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-K4-A54R-01 6 30529832 30529832 C T PRR3 Nonsense_Mutation p.R131* 0.23 TCGA-K4-A54R-01 6 30557594 30557597 CTTC TTT ABCF1 Frame_Shift_Del p.F693Lfs*83 0.29 TCGA-K4-A54R-01 6 31603383 31603383 G A PRRC2A Missense_Mutation p.E1800K 0.27 unknown(0) TCGA-K4-A54R-01 6 31917265 31917265 G C CFB Missense_Mutation p.D949H 0.27 tolerated(0.06) possibly_damaging(0.857) TCGA-K4-A54R-01 6 31939164 31939164 C T DXO Missense_Mutation p.E97K 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-K4-A54R-01 6 32118633 32118633 G A PRRT1 Nonsense_Mutation p.Q24* 0.50 TCGA-K4-A54R-01 6 33168220 33168220 G A RXRB Nonsense_Mutation p.Q12* 0.29 TCGA-K4-A54R-01 6 33644542 33644542 C T ITPR3 Intron 0.27 TCGA-K4-A54R-01 6 36926998 36926998 G A PI16 Silent p.G83G 0.22 TCGA-K4-A54R-01 6 36927062 36927062 G C PI16 Missense_Mutation p.E105Q 0.21 tolerated(0.29) benign(0.078) TCGA-K4-A54R-01 6 42196276 42196276 C T TRERF1 Missense_Mutation p.G1137E 0.25 tolerated_low_confidence(0.1) probably_damaging(0.931) TCGA-K4-A54R-01 6 42883834 42883834 C T PTCRA Silent p.L9L 0.37 TCGA-K4-A54R-01 6 43190562 43190562 G C CUL9 Missense_Mutation p.E2360Q 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-K4-A54R-01 6 43488984 43488984 G A POLR1C Silent p.L329L 0.28 TCGA-K4-A54R-01 6 44222335 44222335 G A SLC35B2 3'UTR 0.33 TCGA-K4-A54R-01 6 44387200 44387200 C T CDC5L Silent p.L369L 0.29 TCGA-K4-A54R-01 6 45917088 45917088 G A CLIC5 Silent p.P227P 0.26 TCGA-K4-A54R-01 6 51483924 51483924 G C PKHD1 Missense_Mutation p.F4060L 0.43 tolerated_low_confidence(0.2) benign(0.001) TCGA-K4-A54R-01 6 52993506 52993506 C T GCM1 Missense_Mutation p.S270N 0.31 tolerated(0.86) benign(0.001) TCGA-K4-A54R-01 6 54173504 54173504 C T TINAG Silent p.F52F 0.26 TCGA-K4-A54R-01 6 56334695 56334695 C T DST Missense_Mutation p.D4890N 0.25 possibly_damaging(0.892) TCGA-K4-A54R-01 6 56357048 56357048 C T DST Missense_Mutation p.D4289N 0.30 possibly_damaging(0.753) TCGA-K4-A54R-01 6 56469714 56469714 G A DST Intron 0.29 TCGA-K4-A54R-01 6 564905 564905 C T EXOC2 Missense_Mutation p.E490K 0.48 deleterious(0.02) benign(0.332) TCGA-K4-A54R-01 6 64413450 64413450 G C PHF3 Missense_Mutation p.E1086Q 0.26 deleterious(0.03) probably_damaging(0.96) TCGA-K4-A54R-01 6 69349124 69349124 C G BAI3 Missense_Mutation p.T186R 0.31 tolerated(0.11) benign(0.094) TCGA-K4-A54R-01 6 74192240 74192240 G C MTO1 Missense_Mutation p.E552Q 0.19 tolerated(0.36) benign(0.202) TCGA-K4-A54R-01 6 7559504 7559504 C G DSP Missense_Mutation p.I156M 0.14 benign(0.031) TCGA-K4-A54R-01 6 7880587 7880587 G C BMP6 3'UTR 0.22 TCGA-K4-A54R-01 6 79724924 79724924 C G PHIP Missense_Mutation p.D467H 0.32 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 6 84765049 84765049 G C MRAP2 Missense_Mutation p.Q4H 0.28 tolerated_low_confidence(0.24) benign(0.028) TCGA-K4-A54R-01 6 97345705 97345705 C G NDUFAF4 5'UTR 0.27 TCGA-K4-A54R-01 7 100071904 100071904 C A TSC22D4 Missense_Mutation p.D308Y 0.35 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 7 100806449 100806449 G A VGF Missense_Mutation p.S559L 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-K4-A54R-01 7 103179564 103179564 C T RELN Missense_Mutation p.D2381N 0.22 tolerated(0.14) probably_damaging(0.997) TCGA-K4-A54R-01 7 105029102 105029102 G A SRPK2 Missense_Mutation p.P22S 0.34 tolerated(0.6) unknown(0) TCGA-K4-A54R-01 7 107414394 107414394 C G SLC26A3 Missense_Mutation p.D660H 0.23 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 7 111982701 111982701 G C ZNF277 Missense_Mutation p.E424Q 0.25 tolerated(0.16) benign(0.063) TCGA-K4-A54R-01 7 11676186 11676186 G A THSD7A Missense_Mutation p.S198F 0.27 deleterious(0) probably_damaging(0.948) TCGA-K4-A54R-01 7 123269256 123269256 G C ASB15 Missense_Mutation p.G403A 0.27 deleterious(0) probably_damaging(0.992) TCGA-K4-A54R-01 7 123508425 123508425 C G HYAL4 Missense_Mutation p.S33C 0.28 tolerated(0.23) benign(0.007) TCGA-K4-A54R-01 7 127223117 127223117 G A GCC1 Silent p.L427L 0.27 TCGA-K4-A54R-01 7 128587910 128587910 C T IRF5 Silent p.F305F 0.29 TCGA-K4-A54R-01 7 129691095 129691095 C T ZC3HC1 Missense_Mutation p.E38K 0.26 deleterious(0.03) benign(0.354) TCGA-K4-A54R-01 7 131832678 131832678 C G PLXNA4 Missense_Mutation p.R1615S 0.29 tolerated(0.09) possibly_damaging(0.639) TCGA-K4-A54R-01 7 133749041 133749041 C T EXOC4 Intron 0.32 TCGA-K4-A54R-01 7 135418745 135418745 G C FAM180A Nonsense_Mutation p.S167* 0.23 TCGA-K4-A54R-01 7 135418985 135418985 G A FAM180A Missense_Mutation p.S87L 0.29 tolerated(0.34) benign(0.004) TCGA-K4-A54R-01 7 138406649 138406649 C T ATP6V0A4 Missense_Mutation p.G711E 0.33 tolerated(1) benign(0.002) TCGA-K4-A54R-01 7 138966756 138966756 G C UBN2 Silent p.V691V 0.24 TCGA-K4-A54R-01 7 139416669 139416669 C T HIPK2 Silent p.K55K 0.34 TCGA-K4-A54R-01 7 141740595 141740595 G A MGAM Missense_Mutation p.R816Q 0.33 deleterious(0) possibly_damaging(0.867) TCGA-K4-A54R-01 7 141954977 141954977 C T PRSS58 Missense_Mutation p.E112K 0.31 tolerated(0.68) benign(0.025) TCGA-K4-A54R-01 7 143078702 143078702 C T ZYX Missense_Mutation p.S13L 0.39 deleterious(0) unknown(0) TCGA-K4-A54R-01 7 144320338 144320338 G A TPK1 Missense_Mutation p.S92L 0.34 tolerated(0.17) benign(0.003) TCGA-K4-A54R-01 7 148489832 148489832 G A CUL1 Silent p.Q607Q 0.48 TCGA-K4-A54R-01 7 148769490 148769490 C G ZNF786 Missense_Mutation p.G125A 0.28 tolerated(0.38) benign(0.122) TCGA-K4-A54R-01 7 149498955 149498955 G A SSPO RNA 0.29 TCGA-K4-A54R-01 7 150068727 150068727 C T REPIN1 Silent p.L190L 0.20 TCGA-K4-A54R-01 7 150654559 150654559 G C KCNH2 Silent p.L316L 0.21 TCGA-K4-A54R-01 7 150835352 150835352 C T AGAP3 Nonsense_Mutation p.Q540* 0.29 TCGA-K4-A54R-01 7 151879026 151879026 C T KMT2C Silent p.V1973V 0.32 TCGA-K4-A54R-01 7 152346132 152346132 C G XRCC2 Missense_Mutation p.L146F 0.25 deleterious(0.02) benign(0.29) TCGA-K4-A54R-01 7 155596208 155596208 C T SHH Missense_Mutation p.E259K 0.25 tolerated(0.07) benign(0.157) TCGA-K4-A54R-01 7 156556371 156556371 G C LMBR1 Missense_Mutation p.S181C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A54R-01 7 157341673 157341673 C T PTPRN2 Silent p.L981L 0.25 TCGA-K4-A54R-01 7 17373573 17373573 G C AHR Missense_Mutation p.G248A 0.35 deleterious(0.01) possibly_damaging(0.716) TCGA-K4-A54R-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.24 tolerated(0.1) benign(0.189) TCGA-K4-A54R-01 7 21658779 21658779 G A DNAH11 Missense_Mutation p.R1444K 0.23 benign(0.005) TCGA-K4-A54R-01 7 27169835 27169835 G A HOXA4 Missense_Mutation p.P173L 0.25 deleterious(0) benign(0.008) TCGA-K4-A54R-01 7 27187081 27187081 C G HOXA6 Missense_Mutation p.Q96H 0.31 tolerated(0.3) probably_damaging(0.948) TCGA-K4-A54R-01 7 30168977 30168977 G A PLEKHA8 3'UTR 0.26 TCGA-K4-A54R-01 7 30963148 30963148 C G AQP1 Silent p.L238L 0.22 TCGA-K4-A54R-01 7 36194053 36194053 C G EEPD1 Silent p.L40L 0.26 TCGA-K4-A54R-01 7 38402682 38402682 C A TRGV2 Missense_Mutation p.G46V 0.37 tolerated(0.29) benign(0.004) TCGA-K4-A54R-01 7 40085528 40085528 C T CDK13 Missense_Mutation p.S816L 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-K4-A54R-01 7 4917720 4917720 C T RADIL Silent p.L17L 0.33 TCGA-K4-A54R-01 7 5769199 5769199 G C RNF216 Missense_Mutation p.S418C 0.32 deleterious(0.01) possibly_damaging(0.878) TCGA-K4-A54R-01 7 65617333 65617333 G T CRCP Missense_Mutation p.D146Y 0.21 deleterious_low_confidence(0.01) benign(0.017) TCGA-K4-A54R-01 7 66461897 66461897 C T TYW1 5'UTR 0.40 TCGA-K4-A54R-01 7 6805382 6805382 G C RSPH10B2 Missense_Mutation p.D207H 0.18 deleterious(0) probably_damaging(0.999) TCGA-K4-A54R-01 7 73800873 73800873 G C CLIP2 Missense_Mutation p.K834N 0.37 tolerated(0.05) probably_damaging(0.999) TCGA-K4-A54R-01 7 73971994 73971994 G A GTF2IRD1 Silent p.R715R 0.27 TCGA-K4-A54R-01 7 74148318 74148318 C T GTF2I Missense_Mutation p.S453L 0.33 tolerated(0.13) benign(0.08) TCGA-K4-A54R-01 7 74524796 74524796 G C GTF2IRD2B Missense_Mutation p.E14Q 0.30 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-K4-A54R-01 7 76134792 76134792 C G DTX2 Missense_Mutation p.I581M 0.10 deleterious(0) possibly_damaging(0.82) TCGA-K4-A54R-01 7 8062158 8062158 C T GLCCI1 Nonsense_Mutation p.Q219* 0.38 TCGA-K4-A54R-01 7 87530130 87530130 G A DBF4 Silent p.L287L 0.33 TCGA-K4-A54R-01 7 8791042 8791042 C G NXPH1 Missense_Mutation p.F153L 0.28 deleterious(0.01) probably_damaging(1) TCGA-K4-A54R-01 7 882848 882848 G C SUN1 Missense_Mutation p.D153H 0.20 deleterious(0) probably_damaging(0.998) TCGA-K4-A54R-01 7 91643629 91643629 C G AKAP9 Missense_Mutation p.S1200C 0.27 benign(0.042) TCGA-K4-A54R-01 7 92126043 92126043 G A PEX1 Missense_Mutation p.R923W 0.31 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 7 92763168 92763168 G C SAMD9L Missense_Mutation p.S706C 0.29 deleterious(0.03) possibly_damaging(0.697) TCGA-K4-A54R-01 7 95457395 95457395 C T DYNC1I1 Missense_Mutation p.S131L 0.26 deleterious(0.01) benign(0.112) TCGA-K4-A54R-01 7 98649874 98649874 C T SMURF1 Silent p.Q225Q 0.27 TCGA-K4-A54R-01 7 99705605 99705605 G A TAF6 Missense_Mutation p.P571S 0.45 tolerated(0.11) benign(0.429) TCGA-K4-A54R-01 7 99818727 99818727 C T PVRIG Silent p.P278P 0.26 TCGA-K4-A54R-01 8 101300254 101300254 G A RNF19A Missense_Mutation p.S50F 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-K4-A54R-01 8 101300263 101300263 G A RNF19A Missense_Mutation p.S47F 0.34 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-K4-A54R-01 8 102381318 102381318 G A NACAP1 RNA 0.21 TCGA-K4-A54R-01 8 104427284 104427284 G A DCAF13 Silent p.T22T 0.32 TCGA-K4-A54R-01 8 105257246 105257246 C A RIMS2 Missense_Mutation p.S1146Y 0.19 deleterious_low_confidence(0) benign(0.087) TCGA-K4-A54R-01 8 113236982 113236982 A G CSMD3 3'UTR 0.31 TCGA-K4-A54R-01 8 124232437 124232437 G C C8orf76 Nonsense_Mutation p.S350* 0.36 TCGA-K4-A54R-01 8 124340581 124340581 C G ATAD2 Missense_Mutation p.L1239F 0.24 tolerated(0.42) benign(0.129) TCGA-K4-A54R-01 8 124799530 124799530 C T FAM91A1 Silent p.L370L 0.27 TCGA-K4-A54R-01 8 125580653 125580653 G A MTSS1 Silent p.F195F 0.29 TCGA-K4-A54R-01 8 132052131 132052131 C T ADCY8 Missense_Mutation p.R150Q 0.41 deleterious(0.02) probably_damaging(0.953) TCGA-K4-A54R-01 8 133851636 133851636 G C PHF20L1 Missense_Mutation p.Q732H 0.29 deleterious(0) benign(0.042) TCGA-K4-A54R-01 8 133899385 133899385 G A TG Missense_Mutation p.D590N 0.30 tolerated(0.41) benign(0.006) TCGA-K4-A54R-01 8 133925509 133925509 C T TG Silent p.C1459C 0.37 TCGA-K4-A54R-01 8 134146946 134146946 G C TG Missense_Mutation p.E2739Q 0.25 tolerated(0.41) benign(0.11) TCGA-K4-A54R-01 8 134147065 134147065 C T TG 3'UTR 0.23 TCGA-K4-A54R-01 8 139845347 139845347 C G COL22A1 Missense_Mutation p.K260N 0.27 unknown(0) TCGA-K4-A54R-01 8 143746288 143746288 G A JRK RNA 0.20 TCGA-K4-A54R-01 8 144332090 144332090 G T ZFP41 Missense_Mutation p.R26I 0.27 tolerated(0.12) benign(0.094) TCGA-K4-A54R-01 8 144680316 144680316 C T TIGD5 Silent p.F81F 0.17 TCGA-K4-A54R-01 8 145268118 145268118 T A MROH1 Intron 0.23 TCGA-K4-A54R-01 8 145268119 145268119 C T MROH1 Intron 0.23 TCGA-K4-A54R-01 8 145535832 145535832 C A HSF1 Silent p.L348L 0.23 TCGA-K4-A54R-01 8 145582012 145582012 C G FBXL6 Silent p.P32P 0.50 TCGA-K4-A54R-01 8 145730208 145730208 G A GPT Missense_Mutation p.D103N 0.28 deleterious(0) possibly_damaging(0.719) TCGA-K4-A54R-01 8 145773565 145773565 G T ARHGAP39 Missense_Mutation p.S302Y 0.37 tolerated(0.27) possibly_damaging(0.837) TCGA-K4-A54R-01 8 1806263 1806263 G A ARHGEF10 Missense_Mutation p.E59K 0.39 tolerated_low_confidence(0.21) benign(0.06) TCGA-K4-A54R-01 8 20112410 20112410 C T LZTS1 Missense_Mutation p.G95R 0.37 tolerated(0.18) probably_damaging(1) TCGA-K4-A54R-01 8 27402155 27402155 G T EPHX2 3'UTR 0.56 TCGA-K4-A54R-01 8 29024922 29024922 C G KIF13B Missense_Mutation p.E376Q 0.44 deleterious(0) possibly_damaging(0.492) TCGA-K4-A54R-01 8 48866199 48866199 G T PRKDC Missense_Mutation p.F234L 0.38 possibly_damaging(0.603) TCGA-K4-A54R-01 8 49832752 49832752 C T SNAI2 Missense_Mutation p.E110K 0.32 tolerated(0.82) benign(0.005) TCGA-K4-A54R-01 8 53852722 53852722 C G NPBWR1 Silent p.L85L 0.25 TCGA-K4-A54R-01 8 54147476 54147476 C T OPRK1 Missense_Mutation p.M151I 0.31 tolerated(0.05) probably_damaging(0.996) TCGA-K4-A54R-01 8 68334824 68334824 G C CPA6 Missense_Mutation p.P410R 0.32 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 8 82667687 82667687 C G CHMP4C Missense_Mutation p.Q151E 0.30 tolerated(0.27) benign(0.098) TCGA-K4-A54R-01 8 86035763 86035763 G A LRRCC1 Missense_Mutation p.R349Q 0.29 tolerated(0.07) possibly_damaging(0.477) TCGA-K4-A54R-01 8 89068471 89068471 G A MMP16 Nonsense_Mutation p.Q420* 0.31 TCGA-K4-A54R-01 9 100071779 100071779 G A CCDC180 Missense_Mutation p.M95I 0.42 tolerated(0.09) benign(0.108) TCGA-K4-A54R-01 9 100678575 100678575 G A C9orf156 Missense_Mutation p.S41L 0.52 tolerated(0.21) benign(0.004) TCGA-K4-A54R-01 9 102595860 102595860 C G NR4A3 Intron 0.61 TCGA-K4-A54R-01 9 109687608 109687608 G A ZNF462 Missense_Mutation p.C472Y 0.52 benign(0.384) TCGA-K4-A54R-01 9 114290071 114290071 G C ZNF483 Missense_Mutation p.Q132H 0.35 deleterious(0) possibly_damaging(0.522) TCGA-K4-A54R-01 9 114454538 114454538 G C C9orf84 Nonsense_Mutation p.S1176* 0.33 TCGA-K4-A54R-01 9 116094291 116094291 G A WDR31 Silent p.L4L 0.23 TCGA-K4-A54R-01 9 116135890 116135890 G A HDHD3 Missense_Mutation p.P249S 0.37 tolerated_low_confidence(0.1) benign(0.008) TCGA-K4-A54R-01 9 116931576 116931576 C A COL27A1 Missense_Mutation p.Q581K 0.24 unknown(0) TCGA-K4-A54R-01 9 119460240 119460240 G C TRIM32 Missense_Mutation p.L73F 0.25 deleterious(0.02) possibly_damaging(0.738) TCGA-K4-A54R-01 9 123301432 123301432 C T CDK5RAP2 Missense_Mutation p.E132K 0.29 deleterious(0) possibly_damaging(0.621) TCGA-K4-A54R-01 9 123887998 123887998 G C CNTRL Missense_Mutation p.Q603H 0.42 probably_damaging(0.999) TCGA-K4-A54R-01 9 123920070 123920070 G C CNTRL Missense_Mutation p.E1517Q 0.29 possibly_damaging(0.501) TCGA-K4-A54R-01 9 124441051 124441051 C T DAB2IP Silent p.F45F 0.38 TCGA-K4-A54R-01 9 126125325 126125325 C T CRB2 Silent p.F92F 0.20 TCGA-K4-A54R-01 9 127561623 127561623 C T OLFML2A Silent p.L174L 0.27 TCGA-K4-A54R-01 9 127624226 127624226 G C RPL35 5'UTR 0.28 TCGA-K4-A54R-01 9 127999230 127999230 C T HSPA5 Missense_Mutation p.E536K 0.26 deleterious_low_confidence(0) benign(0.368) TCGA-K4-A54R-01 9 128001074 128001074 C G HSPA5 Missense_Mutation p.Q343H 0.37 deleterious_low_confidence(0) benign(0.032) TCGA-K4-A54R-01 9 128001231 128001231 C G HSPA5 Missense_Mutation p.E329Q 0.25 deleterious_low_confidence(0) benign(0.129) TCGA-K4-A54R-01 9 131865300 131865300 C G CRAT Missense_Mutation p.M152I 0.28 deleterious(0.05) benign(0.289) TCGA-K4-A54R-01 9 13247726 13247726 C G MPDZ Missense_Mutation p.D31H 0.32 deleterious(0) possibly_damaging(0.89) TCGA-K4-A54R-01 9 134034796 134034796 G A NUP214 Silent p.V821V 0.26 TCGA-K4-A54R-01 9 134334714 134334714 C T PRRC2B Missense_Mutation p.H459Y 0.26 tolerated(0.88) benign(0.397) TCGA-K4-A54R-01 9 136915676 136915676 G A BRD3 Silent p.S178S 0.17 TCGA-K4-A54R-01 9 139277971 139277971 C T SNAPC4 Silent p.A550A 0.23 TCGA-K4-A54R-01 9 139279208 139279208 C A SNAPC4 Nonsense_Mutation p.E462* 0.17 TCGA-K4-A54R-01 9 139279209 139279209 C T SNAPC4 Silent p.E461E 0.17 TCGA-K4-A54R-01 9 139701494 139701494 G C CCDC183 Missense_Mutation p.E488Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-K4-A54R-01 9 139701506 139701506 G T CCDC183 Nonsense_Mutation p.E492* 0.23 TCGA-K4-A54R-01 9 139815555 139815555 C T TRAF2 Silent p.V342V 0.32 TCGA-K4-A54R-01 9 139837014 139837014 G A FBXW5 Silent p.L220L 0.23 TCGA-K4-A54R-01 9 140166601 140166601 C T NELFB Silent p.L472L 0.36 TCGA-K4-A54R-01 9 140507311 140507311 C T ARRDC1 Intron 0.50 TCGA-K4-A54R-01 9 14155855 14155855 G T NFIB Missense_Mutation p.F218L 0.26 deleterious(0.04) probably_damaging(0.977) TCGA-K4-A54R-01 9 18680479 18680479 G C ADAMTSL1 Missense_Mutation p.D436H 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-K4-A54R-01 9 18826437 18826437 G A ADAMTSL1 Missense_Mutation p.E1364K 0.11 tolerated(0.26) possibly_damaging(0.46) TCGA-K4-A54R-01 9 19786118 19786118 C G SLC24A2 Missense_Mutation p.L249F 0.29 deleterious(0) probably_damaging(0.97) TCGA-K4-A54R-01 9 21207142 21207142 G A IFNA10 5'UTR 0.33 TCGA-K4-A54R-01 9 21971177 21971177 C T CDKN2A Missense_Mutation p.E61K 0.30 tolerated(0.11) benign(0.041) TCGA-K4-A54R-01 9 334236 334236 G C DOCK8 Missense_Mutation p.K379N 0.32 tolerated(0.19) probably_damaging(0.999) TCGA-K4-A54R-01 9 35045391 35045391 C G C9orf131 Nonsense_Mutation p.S922* 0.27 TCGA-K4-A54R-01 9 35384294 35384294 G A UNC13B Missense_Mutation p.D871N 0.32 deleterious(0) possibly_damaging(0.449) TCGA-K4-A54R-01 9 35560546 35560546 G C RUSC2 Missense_Mutation p.K1303N 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-K4-A54R-01 9 35684256 35684256 G A TPM2 Silent p.I253I 0.28 TCGA-K4-A54R-01 9 35707202 35707202 C T TLN1 Missense_Mutation p.E1608K 0.35 tolerated(0.11) possibly_damaging(0.663) TCGA-K4-A54R-01 9 37744740 37744740 T G FRMPD1 Missense_Mutation p.L904R 0.32 tolerated(0.08) probably_damaging(0.945) TCGA-K4-A54R-01 9 41962677 41962677 G C RP11-204M4.2 RNA 0.34 TCGA-K4-A54R-01 9 428428 428428 C T DOCK8 Silent p.L1469L 0.24 TCGA-K4-A54R-01 9 72930480 72930480 G C SMC5 Missense_Mutation p.E598Q 0.28 tolerated(0.41) benign(0.251) TCGA-K4-A54R-01 9 82267559 82267559 C G TLE4 Missense_Mutation p.L148V 0.27 deleterious(0.03) benign(0.289) TCGA-K4-A54R-01 9 90497741 90497741 G A SPATA31E1 5'UTR 0.75 TCGA-K4-A54R-01 X 103080336 103080336 C T RAB9B Missense_Mutation p.D127N 0.61 deleterious(0) benign(0.203) TCGA-K4-A54R-01 X 105912462 105912462 C T CXorf57 Missense_Mutation p.S780F 0.55 tolerated(0.74) possibly_damaging(0.466) TCGA-K4-A54R-01 X 106224144 106224144 C T MORC4 Missense_Mutation p.D305N 0.42 deleterious(0.04) possibly_damaging(0.645) TCGA-K4-A54R-01 X 106808218 106808218 C A FRMPD3 Missense_Mutation p.F439L 0.54 deleterious(0.01) probably_damaging(0.993) TCGA-K4-A54R-01 X 109459792 109459792 G A AMMECR1 Missense_Mutation p.S218F 0.53 deleterious(0) probably_damaging(1) TCGA-K4-A54R-01 X 111095544 111095544 C T TRPC5 Silent p.K453K 0.56 TCGA-K4-A54R-01 X 112025817 112025817 C T AMOT Missense_Mutation p.E731K 0.68 unknown(0) TCGA-K4-A54R-01 X 117033228 117033228 G C KLHL13 Silent p.L540L 0.51 TCGA-K4-A54R-01 X 119059243 119059243 C T NKAP Silent p.K396K 0.47 TCGA-K4-A54R-01 X 119059249 119059249 C T NKAP Silent p.E394E 0.48 TCGA-K4-A54R-01 X 123514392 123514392 C G TENM1 Missense_Mutation p.R2731S 0.49 deleterious(0) probably_damaging(0.987) TCGA-K4-A54R-01 X 12736677 12736677 G A FRMPD4 Silent p.G1244G 0.68 TCGA-K4-A54R-01 X 135427927 135427927 G C GPR112 Missense_Mutation p.E688Q 0.64 tolerated(0.05) benign(0.091) TCGA-K4-A54R-01 X 140993266 140993266 C T MAGEC1 Missense_Mutation p.P26S 0.07 tolerated_low_confidence(0.09) possibly_damaging(0.641) TCGA-K4-A54R-01 X 150907010 150907010 C T CNGA2 Missense_Mutation p.H19Y 0.68 tolerated_low_confidence(1) benign(0.018) TCGA-K4-A54R-01 X 152981031 152981031 G C BCAP31 Missense_Mutation p.L170V 0.64 deleterious(0.02) probably_damaging(0.98) TCGA-K4-A54R-01 X 16864007 16864007 C A RBBP7 Nonsense_Mutation p.E429* 0.72 TCGA-K4-A54R-01 X 21875391 21875391 G C YY2 Missense_Mutation p.K263N 0.75 deleterious(0) probably_damaging(0.997) TCGA-K4-A54R-01 X 25025278 25025278 G A ARX Silent p.L466L 0.86 TCGA-K4-A54R-01 X 3248282 3248282 G A MXRA5 Silent p.L162L 0.71 TCGA-K4-A54R-01 X 49047840 49047840 C G SYP Intron 0.67 TCGA-K4-A54R-01 X 49113896 49113896 C A FOXP3 Missense_Mutation p.G148C 0.83 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-K4-A54R-01 X 53577926 53577926 G C HUWE1 Silent p.L3107L 0.55 TCGA-K4-A54R-01 X 67937975 67937975 C T STARD8 Missense_Mutation p.R407W 0.63 deleterious(0) possibly_damaging(0.631) TCGA-K4-A54R-01 X 68060224 68060224 C T EFNB1 Silent p.I256I 0.12 TCGA-K4-A54R-01 X 68382149 68382149 C T PJA1 Silent p.E311E 0.75 TCGA-K4-A54R-01 X 70147842 70147842 G A SLC7A3 Silent p.S283S 0.62 TCGA-K4-A54R-01 X 70288045 70288045 G A SNX12 Nonsense_Mutation p.Q38* 0.54 TCGA-K4-A54R-01 X 70356467 70356467 A G MED12 Missense_Mutation p.K1788E 0.73 benign(0.078) TCGA-K4-A54R-01 X 70357410 70357410 G A MED12 Silent p.Q1917Q 0.56 TCGA-K4-A54R-01 X 71360362 71360362 G T NHSL2 Missense_Mutation p.Q988H 0.63 deleterious(0.02) probably_damaging(0.973) TCGA-K4-A54R-01 X 72434145 72434145 C T NAP1L2 Missense_Mutation p.G62S 0.50 tolerated(0.1) benign(0.007) TCGA-K4-A54R-01 X 83359638 83359638 G A RPS6KA6 Missense_Mutation p.L495F 0.70 deleterious(0) probably_damaging(0.991) TCGA-K4-A54R-01 X 84523329 84523329 G T ZNF711 Nonsense_Mutation p.E316* 0.45 TCGA-K4-A54R-01 X 96192268 96192268 C G DIAPH2 Missense_Mutation p.Q376E 0.64 deleterious(0) unknown(0) TCGA-K4-A54R-01 Y 2847550 2847550 C G ZFY Nonsense_Mutation p.S641* 0.78 TCGA-K4-A54R-01 Y 6942600 6942600 G A TBL1Y Splice_Site p.X299_splice 0.57 TCGA-K4-A5RH-01 10 102020025 102020025 T C CWF19L1 Missense_Mutation p.Y80C 0.16 tolerated(0.11) benign(0.001) TCGA-K4-A5RH-01 10 102020035 102020035 T G CWF19L1 Missense_Mutation p.T77P 0.16 tolerated(0.25) benign(0.088) TCGA-K4-A5RH-01 10 127512247 127512247 G A BCCIP Missense_Mutation p.D41N 0.35 tolerated(0.05) benign(0.029) TCGA-K4-A5RH-01 10 134997394 134997394 G A KNDC1 Missense_Mutation p.E176K 0.13 deleterious(0.01) possibly_damaging(0.811) TCGA-K4-A5RH-01 10 17127619 17127619 T C CUBN Missense_Mutation p.H696R 0.11 tolerated(0.07) possibly_damaging(0.772) TCGA-K4-A5RH-01 10 17750927 17750927 G A STAM Silent p.Q454Q 0.19 TCGA-K4-A5RH-01 10 22616718 22616718 G A BMI1 Missense_Mutation p.D105N 0.23 tolerated(0.08) benign(0.265) TCGA-K4-A5RH-01 10 35317755 35317755 C T CUL2 Missense_Mutation p.E553K 0.08 tolerated(0.17) benign(0.061) TCGA-K4-A5RH-01 10 37421180 37421180 C T ANKRD30A Missense_Mutation p.P119S 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-K4-A5RH-01 10 55582797 55582797 C T PCDH15 Silent p.L1565L 0.28 TCGA-K4-A5RH-01 10 63195969 63195969 C A TMEM26 Missense_Mutation p.V77F 0.40 deleterious(0) probably_damaging(0.931) TCGA-K4-A5RH-01 10 72307085 72307085 G A PALD1 Silent p.L715L 0.13 TCGA-K4-A5RH-01 11 101981761 101981761 C G YAP1 Missense_Mutation p.S61W 0.11 deleterious(0.01) benign(0.057) TCGA-K4-A5RH-01 11 103908332 103908332 C T DDI1 Missense_Mutation p.S261L 0.24 deleterious(0) probably_damaging(0.996) TCGA-K4-A5RH-01 11 118343093 118343093 C T KMT2A Nonsense_Mutation p.R407* 0.26 TCGA-K4-A5RH-01 11 118971040 118971040 C A DPAGT1 Missense_Mutation p.G192V 0.28 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 11 12243221 12243221 C T MICAL2 Missense_Mutation p.R413C 0.25 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 11 126081508 126081508 G C RPUSD4 Missense_Mutation p.S9W 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-K4-A5RH-01 11 130297521 130297521 C T ADAMTS8 Missense_Mutation p.V221M 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-K4-A5RH-01 11 45986918 45986918 C T PHF21A Missense_Mutation p.R314K 0.19 tolerated(0.43) possibly_damaging(0.54) TCGA-K4-A5RH-01 11 62747380 62747380 G A SLC22A6 Silent p.L360L 0.21 TCGA-K4-A5RH-01 11 76062361 76062361 G A PRKRIR Silent p.V611V 0.27 TCGA-K4-A5RH-01 11 88241725 88241725 C T GRM5 3'UTR 0.17 TCGA-K4-A5RH-01 11 93839183 93839183 C T HEPHL1 Missense_Mutation p.L978F 0.24 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 11 93839273 93839273 C G HEPHL1 Missense_Mutation p.H1008D 0.24 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 12 121202779 121202779 C G SPPL3 3'UTR 0.21 TCGA-K4-A5RH-01 12 122710529 122710529 G A DIABLO Silent p.S11S 0.24 TCGA-K4-A5RH-01 12 123062324 123062324 G C KNTC1 Missense_Mutation p.D943H 0.23 tolerated(0.32) possibly_damaging(0.769) TCGA-K4-A5RH-01 12 41961591 41961591 G A PDZRN4 Missense_Mutation p.E492K 0.16 tolerated(0.25) benign(0.288) TCGA-K4-A5RH-01 12 52756195 52756195 C T KRT85 Missense_Mutation p.D380N 0.22 deleterious(0.04) possibly_damaging(0.721) TCGA-K4-A5RH-01 12 56566481 56566481 G A SMARCC2 Missense_Mutation p.S553F 0.25 deleterious(0) benign(0.047) TCGA-K4-A5RH-01 12 81112757 81112757 C T MYF5 Missense_Mutation p.P232L 0.23 deleterious(0.01) benign(0.004) TCGA-K4-A5RH-01 12 81675142 81675142 G A PPFIA2 Nonsense_Mutation p.Q1036* 0.16 TCGA-K4-A5RH-01 13 26789665 26789665 C T RNF6 Silent p.R118R 0.27 TCGA-K4-A5RH-01 13 29599891 29599891 A G MTUS2 Silent p.A362A 0.07 TCGA-K4-A5RH-01 13 48951092 48951093 - G RB1 Frame_Shift_Ins p.V419Gfs*9 0.29 TCGA-K4-A5RH-01 13 79175534 79175534 A T POU4F1 3'UTR 0.10 TCGA-K4-A5RH-01 14 57675258 57675258 G A EXOC5 3'UTR 0.27 TCGA-K4-A5RH-01 14 96922768 96922768 C T AK7 Missense_Mutation p.H395Y 0.42 tolerated(0.13) possibly_damaging(0.768) TCGA-K4-A5RH-01 15 101853645 101853645 G C PCSK6 Missense_Mutation p.P878A 0.07 tolerated(0.57) benign(0.008) TCGA-K4-A5RH-01 15 43038152 43038152 G A TTBK2 Silent p.P1192P 0.20 TCGA-K4-A5RH-01 15 52537623 52537623 G A MYO5C Silent p.L702L 0.13 TCGA-K4-A5RH-01 15 74290715 74290715 C G PML Missense_Mutation p.A167G 0.13 deleterious(0.04) possibly_damaging(0.479) TCGA-K4-A5RH-01 15 76019976 76019976 G A ODF3L1 3'UTR 0.50 TCGA-K4-A5RH-01 15 90172276 90172276 G A KIF7 Missense_Mutation p.R1199C 0.36 tolerated(0.09) possibly_damaging(0.762) TCGA-K4-A5RH-01 15 91341440 91341440 G A BLM Silent p.V1077V 0.16 TCGA-K4-A5RH-01 15 91346861 91346861 G A BLM Missense_Mutation p.E1157K 0.43 deleterious(0) probably_damaging(0.997) TCGA-K4-A5RH-01 15 92671633 92671633 G A SLCO3A1 Missense_Mutation p.E476K 0.15 tolerated(0.28) benign(0.026) TCGA-K4-A5RH-01 16 29917130 29917130 G A ASPHD1 Missense_Mutation p.R362Q 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-K4-A5RH-01 16 30393431 30393431 T C SEPT1 Missense_Mutation p.Q60R 0.35 benign(0.004) TCGA-K4-A5RH-01 16 3140627 3140627 C T ZSCAN10 Missense_Mutation p.D215N 0.17 tolerated(0.35) benign(0.005) TCGA-K4-A5RH-01 16 3788617 3788617 C A CREBBP Missense_Mutation p.R1446L 0.32 unknown(0) TCGA-K4-A5RH-01 16 48577056 48577056 C A N4BP1 Missense_Mutation p.G817V 0.11 deleterious(0.02) possibly_damaging(0.856) TCGA-K4-A5RH-01 16 49671863 49671863 G A ZNF423 Silent p.D400D 0.11 TCGA-K4-A5RH-01 16 52480090 52480090 G T TOX3 Missense_Mutation p.P241H 0.12 deleterious(0) probably_damaging(0.986) TCGA-K4-A5RH-01 16 55362858 55362858 G A IRX6 Missense_Mutation p.G323E 0.19 tolerated(0.19) benign(0.007) TCGA-K4-A5RH-01 16 57935322 57935322 C T CNGB1 Missense_Mutation p.M970I 0.12 deleterious(0.01) benign(0.096) TCGA-K4-A5RH-01 16 70867962 70867962 C T HYDIN Missense_Mutation p.E4503K 0.20 possibly_damaging(0.801) TCGA-K4-A5RH-01 16 7568298 7568298 C T RBFOX1 Silent p.P79P 0.24 TCGA-K4-A5RH-01 16 77323202 77323202 C T ADAMTS18 Missense_Mutation p.R1170Q 0.23 tolerated(0.8) benign(0.01) TCGA-K4-A5RH-01 16 88039797 88039797 C G BANP Missense_Mutation p.S186C 0.12 deleterious_low_confidence(0.04) benign(0.011) TCGA-K4-A5RH-01 16 88904043 88904043 C T GALNS Missense_Mutation p.E185K 0.16 tolerated(0.1) benign(0.142) TCGA-K4-A5RH-01 17 17962245 17962245 G A GID4 Missense_Mutation p.E224K 0.22 tolerated(0.16) benign(0.065) TCGA-K4-A5RH-01 17 34916671 34916671 C T GGNBP2 Nonsense_Mutation p.Q163* 0.31 TCGA-K4-A5RH-01 17 42855382 42855382 C T ADAM11 Silent p.I711I 0.33 TCGA-K4-A5RH-01 17 42987371 42987371 T C GFAP 3'Flank 0.40 TCGA-K4-A5RH-01 17 48213403 48213403 G A PPP1R9B Nonsense_Mutation p.Q743* 0.27 TCGA-K4-A5RH-01 17 5284737 5284737 G C RABEP1 Missense_Mutation p.Q808H 0.14 deleterious(0) benign(0.01) TCGA-K4-A5RH-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.47 deleterious(0.01) probably_damaging(0.978) TCGA-K4-A5RH-01 17 76116585 76116585 G C TMC6 Intron 0.23 TCGA-K4-A5RH-01 17 79985563 79985563 C T LRRC45 Missense_Mutation p.R283C 0.13 deleterious(0.04) benign(0.01) TCGA-K4-A5RH-01 18 12371683 12371683 C T AFG3L2 Missense_Mutation p.R41Q 0.19 tolerated_low_confidence(0.29) benign(0.001) TCGA-K4-A5RH-01 18 21723081 21723081 G A CABYR Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.981) TCGA-K4-A5RH-01 18 21723098 21723098 G A CABYR Missense_Mutation p.R7K 0.33 tolerated(0.11) possibly_damaging(0.58) TCGA-K4-A5RH-01 18 21723370 21723370 G A CABYR Silent p.Q64Q 0.44 TCGA-K4-A5RH-01 18 44549209 44549209 C A TCEB3CL Nonsense_Mutation p.E364* 0.03 TCGA-K4-A5RH-01 18 47375993 47375993 T C MYO5B Missense_Mutation p.E1420G 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-K4-A5RH-01 18 5892002 5892002 G A TMEM200C Missense_Mutation p.P21S 0.11 tolerated(0.05) probably_damaging(0.992) TCGA-K4-A5RH-01 18 67992515 67992515 A T SOCS6 Missense_Mutation p.H204L 0.38 deleterious_low_confidence(0.04) benign(0.035) TCGA-K4-A5RH-01 19 11892261 11892261 G A ZNF441 Missense_Mutation p.R541K 0.32 tolerated(0.74) benign(0.144) TCGA-K4-A5RH-01 19 21131995 21131995 G - ZNF85 Frame_Shift_Del p.G226Efs*53 0.26 TCGA-K4-A5RH-01 19 21713389 21713389 A G ZNF429 Splice_Site p.X44_splice 0.18 TCGA-K4-A5RH-01 19 31770225 31770225 G C TSHZ3 Missense_Mutation p.S158R 0.14 tolerated(0.09) probably_damaging(0.986) TCGA-K4-A5RH-01 19 43859826 43859826 G A CD177 3'UTR 0.32 TCGA-K4-A5RH-01 19 44585253 44585253 G A ZNF284 Missense_Mutation p.R34Q 0.13 tolerated(0.55) benign(0.29) TCGA-K4-A5RH-01 19 44661040 44661040 G A ZNF234 Missense_Mutation p.D291N 0.13 tolerated(0.12) benign(0.168) TCGA-K4-A5RH-01 19 45368567 45368567 G A PVRL2 Missense_Mutation p.R43Q 0.15 tolerated(0.18) benign(0.003) TCGA-K4-A5RH-01 19 45525432 45525432 G A RELB Missense_Mutation p.R209K 0.39 tolerated(0.16) possibly_damaging(0.572) TCGA-K4-A5RH-01 19 46307816 46307816 G A RSPH6A Silent p.I449I 0.23 TCGA-K4-A5RH-01 19 46375759 46375759 C T FOXA3 Missense_Mutation p.R166C 0.23 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RH-01 19 46387865 46387865 C T IRF2BP1 Missense_Mutation p.E390K 0.08 tolerated(0.22) benign(0.305) TCGA-K4-A5RH-01 19 51128771 51128771 G A SYT3 Missense_Mutation p.R485W 0.26 deleterious(0) probably_damaging(0.986) TCGA-K4-A5RH-01 19 52272667 52272667 C T FPR2 Silent p.I252I 0.14 TCGA-K4-A5RH-01 19 52569784 52569784 G A ZNF841 Missense_Mutation p.H451Y 0.21 deleterious(0) probably_damaging(0.967) TCGA-K4-A5RH-01 19 54175252 54175252 C A MIR1323 RNA 0.06 TCGA-K4-A5RH-01 19 54314236 54314236 A G NLRP12 Missense_Mutation p.L226P 0.14 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 19 7593069 7593069 G A MCOLN1 Missense_Mutation p.S268N 0.23 deleterious(0.03) probably_damaging(0.98) TCGA-K4-A5RH-01 1 117057419 117057419 C T CD58 3'UTR 0.38 TCGA-K4-A5RH-01 1 117617594 117617594 G A TTF2 Missense_Mutation p.D130N 0.22 tolerated(0.23) benign(0.059) TCGA-K4-A5RH-01 1 145594092 145594092 C T POLR3C Missense_Mutation p.M490I 0.17 tolerated(0.15) benign(0.243) TCGA-K4-A5RH-01 1 145594124 145594124 C G POLR3C Missense_Mutation p.E480Q 0.17 tolerated(0.13) benign(0.323) TCGA-K4-A5RH-01 1 145594178 145594178 C G POLR3C Missense_Mutation p.E462Q 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-K4-A5RH-01 1 150325454 150325454 G C PRPF3 Nonstop_Mutation p.*684Sext*67 0.23 TCGA-K4-A5RH-01 1 150970638 150970638 G A FAM63A Missense_Mutation p.H413Y 0.32 tolerated(0.1) probably_damaging(0.935) TCGA-K4-A5RH-01 1 152127141 152127141 G C RPTN 3'UTR 0.09 TCGA-K4-A5RH-01 1 152127533 152127533 G A RPTN Missense_Mutation p.S681L 0.11 tolerated(0.07) benign(0.086) TCGA-K4-A5RH-01 1 152128362 152128362 G A RPTN Nonsense_Mutation p.Q405* 0.11 TCGA-K4-A5RH-01 1 152128407 152128407 G A RPTN Missense_Mutation p.H390Y 0.12 tolerated(0.05) possibly_damaging(0.821) TCGA-K4-A5RH-01 1 152128481 152128481 G C RPTN Missense_Mutation p.S365C 0.11 deleterious(0) probably_damaging(0.957) TCGA-K4-A5RH-01 1 152128785 152128785 G C RPTN Missense_Mutation p.Q264E 0.11 deleterious(0) benign(0.269) TCGA-K4-A5RH-01 1 152129395 152129395 G C RPTN Silent p.L60L 0.13 TCGA-K4-A5RH-01 1 152130234 152130234 G T RPTN Silent p.I44I 0.16 TCGA-K4-A5RH-01 1 153598831 153598831 C G S100A13 Missense_Mutation p.E40Q 0.16 tolerated(0.06) possibly_damaging(0.899) TCGA-K4-A5RH-01 1 153598931 153598931 C T S100A13 Silent p.L6L 0.15 TCGA-K4-A5RH-01 1 153604026 153604026 G A S100A1 Intron 0.29 TCGA-K4-A5RH-01 1 153604099 153604099 C T S100A1 Intron 0.13 TCGA-K4-A5RH-01 1 153604179 153604179 G A S100A1 Silent p.Q49Q 0.29 TCGA-K4-A5RH-01 1 153652193 153652193 G T NPR1 Silent p.L203L 0.14 TCGA-K4-A5RH-01 1 153653074 153653074 G C NPR1 Silent p.L273L 0.14 TCGA-K4-A5RH-01 1 153653075 153653075 G A NPR1 Missense_Mutation p.D274N 0.14 deleterious(0.03) probably_damaging(1) TCGA-K4-A5RH-01 1 153653103 153653103 G T NPR1 Missense_Mutation p.G283V 0.07 tolerated(0.07) benign(0.006) TCGA-K4-A5RH-01 1 154163692 154163692 C T TPM3 Silent p.K71K 0.42 TCGA-K4-A5RH-01 1 155234288 155234288 C G CLK2 Missense_Mutation p.E372Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RH-01 1 156085052 156085052 G A LMNA Missense_Mutation p.E115K 0.31 deleterious(0.04) benign(0.395) TCGA-K4-A5RH-01 1 159038422 159038422 G T AIM2 Missense_Mutation p.S111Y 0.14 tolerated(0.05) benign(0.424) TCGA-K4-A5RH-01 1 159174643 159174643 T G DARC 5'Flank 0.36 TCGA-K4-A5RH-01 1 161172214 161172214 C A NDUFS2 Silent p.V13V 0.07 TCGA-K4-A5RH-01 1 16259934 16259934 C A SPEN Missense_Mutation p.S2400Y 0.28 benign(0.157) TCGA-K4-A5RH-01 1 16945508 16945508 C A RP5-1182A14.5 3'Flank 0.06 TCGA-K4-A5RH-01 1 16945577 16945577 C G RP5-1182A14.5 3'Flank 0.10 TCGA-K4-A5RH-01 1 19547319 19547319 G - EMC1 Frame_Shift_Del p.L871Ffs*25 0.23 TCGA-K4-A5RH-01 1 205116748 205116748 T C DSTYK Missense_Mutation p.M910V 0.52 tolerated(0.23) benign(0.007) TCGA-K4-A5RH-01 1 207318121 207318121 C A C4BPA 3'UTR 0.53 TCGA-K4-A5RH-01 1 21268509 21268509 C T EIF4G3 Missense_Mutation p.D330N 0.28 tolerated_low_confidence(0.14) benign(0.001) TCGA-K4-A5RH-01 1 220928391 220928391 C T MARC2 Silent p.F125F 0.22 TCGA-K4-A5RH-01 1 231954236 231954236 G A DISC1 Missense_Mutation p.E652K 0.20 deleterious(0) probably_damaging(0.929) TCGA-K4-A5RH-01 1 236766649 236766649 C G HEATR1 Missense_Mutation p.G57A 0.21 tolerated(0.1) benign(0.12) TCGA-K4-A5RH-01 1 241798273 241798273 G A CHML Missense_Mutation p.L266F 0.21 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RH-01 1 27755387 27755387 G A WASF2 Missense_Mutation p.T5M 0.18 deleterious(0.04) unknown(0) TCGA-K4-A5RH-01 1 3414972 3414972 G C MEGF6 Silent p.L1105L 0.53 TCGA-K4-A5RH-01 1 48764299 48764299 A T SPATA6 3'UTR 0.21 TCGA-K4-A5RH-01 1 63063189 63063189 C T ANGPTL3 5'UTR 0.25 TCGA-K4-A5RH-01 1 94574256 94574256 G A ABCA4 Nonsense_Mutation p.R107* 0.30 TCGA-K4-A5RH-01 1 94639573 94639573 G A ARHGAP29 Missense_Mutation p.S1213L 0.28 tolerated_low_confidence(0.07) benign(0.002) TCGA-K4-A5RH-01 20 13765904 13765904 G T NDUFAF5 Nonsense_Mutation p.E64* 0.13 TCGA-K4-A5RH-01 20 1629828 1629828 C T SIRPG Missense_Mutation p.M100I 0.26 tolerated(0.06) benign(0.005) TCGA-K4-A5RH-01 20 2796220 2796220 C A C20orf141 Silent p.L99L 0.08 TCGA-K4-A5RH-01 20 34097869 34097869 G A CEP250 Missense_Mutation p.E2351K 0.36 benign(0.015) TCGA-K4-A5RH-01 20 35695204 35695204 C G RBL1 Missense_Mutation p.D257H 0.25 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 20 4162527 4162527 C T SMOX Silent p.F171F 0.16 TCGA-K4-A5RH-01 20 43851371 43851371 G A SEMG2 Silent p.Q366Q 0.21 TCGA-K4-A5RH-01 20 52789600 52789600 C T CYP24A1 Missense_Mutation p.M99I 0.14 deleterious(0.03) benign(0.413) TCGA-K4-A5RH-01 20 9453491 9453491 G A PLCB4 Silent p.K1123K 0.14 TCGA-K4-A5RH-01 21 15352121 15352121 C T ANKRD20A11P RNA 0.08 TCGA-K4-A5RH-01 21 33044299 33044310 GCTGTGGCTGCT - SCAF4 In_Frame_Del p.Q949_Q952del 0.18 TCGA-K4-A5RH-01 21 41725468 41725468 C T DSCAM Silent p.S286S 0.11 TCGA-K4-A5RH-01 21 45959431 45959431 G T KRTAP10-1 Silent p.P201P 0.31 TCGA-K4-A5RH-01 22 20458116 20458116 C G RIMBP3 Silent p.R1062R 0.21 TCGA-K4-A5RH-01 22 24199193 24199193 C T SLC2A11 Intron 0.43 TCGA-K4-A5RH-01 22 26168458 26168458 C T MYO18B Missense_Mutation p.S617L 0.41 tolerated(0.67) benign(0.005) TCGA-K4-A5RH-01 22 28193795 28193795 C T MN1 Missense_Mutation p.G913R 0.22 possibly_damaging(0.692) TCGA-K4-A5RH-01 22 50857359 50857359 C A PPP6R2 Missense_Mutation p.Q228K 0.35 deleterious(0) possibly_damaging(0.823) TCGA-K4-A5RH-01 22 50861948 50861948 C T PPP6R2 Silent p.L345L 0.32 TCGA-K4-A5RH-01 2 121740413 121740413 C T GLI2 Missense_Mutation p.A547V 0.20 deleterious(0) probably_damaging(0.979) TCGA-K4-A5RH-01 2 208841921 208841921 T C PLEKHM3 Missense_Mutation p.T334A 0.11 tolerated(0.81) benign(0) TCGA-K4-A5RH-01 2 27327301 27327301 A G CGREF1 Intron 0.20 TCGA-K4-A5RH-01 2 677242 677242 C T TMEM18 Intron 0.38 TCGA-K4-A5RH-01 2 71211889 71211889 G A ANKRD53 Missense_Mutation p.R351K 0.25 tolerated(1) benign(0.002) TCGA-K4-A5RH-01 2 71360261 71360261 C T MPHOSPH10 Missense_Mutation p.P108L 0.18 tolerated(0.09) benign(0.243) TCGA-K4-A5RH-01 2 80801295 80801295 A G CTNNA2 Silent p.P583P 0.18 TCGA-K4-A5RH-01 3 113345005 113345005 C T SIDT1 Silent p.F788F 0.22 TCGA-K4-A5RH-01 3 128199967 128199967 G T GATA2 Missense_Mutation p.F446L 0.21 deleterious(0) probably_damaging(0.914) TCGA-K4-A5RH-01 3 128200028 128200028 G A GATA2 Missense_Mutation p.S426F 0.15 tolerated(0.22) benign(0.185) TCGA-K4-A5RH-01 3 128200119 128200119 G A GATA2 Missense_Mutation p.R396W 0.16 deleterious(0) probably_damaging(0.988) TCGA-K4-A5RH-01 3 132249921 132249921 A G DNAJC13 Missense_Mutation p.Q2202R 0.25 tolerated(0.63) benign(0.009) TCGA-K4-A5RH-01 3 142188196 142188196 T C ATR Missense_Mutation p.M2179V 0.20 tolerated(0.05) benign(0.006) TCGA-K4-A5RH-01 3 14548392 14548392 C A GRIP2 RNA 0.36 TCGA-K4-A5RH-01 3 186505329 186505329 T G EIF4A2 Missense_Mutation p.F319V 0.25 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RH-01 3 187088876 187088876 C A RTP4 Silent p.A152A 0.32 TCGA-K4-A5RH-01 3 188592259 188592259 G A LPP Missense_Mutation p.D611N 0.06 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RH-01 3 44611673 44611673 T C ZKSCAN7 Silent p.Y357Y 0.15 TCGA-K4-A5RH-01 3 52729490 52729490 C G GLT8D1 Missense_Mutation p.W253C 0.24 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 3 53338236 53338236 C A DCP1A Nonsense_Mutation p.E199* 0.10 TCGA-K4-A5RH-01 3 62860633 62860633 G A CADPS Silent p.L24L 0.33 TCGA-K4-A5RH-01 3 64619153 64619153 A T ADAMTS9 Missense_Mutation p.C724S 0.09 deleterious(0) probably_damaging(0.994) TCGA-K4-A5RH-01 3 64619154 64619154 A C ADAMTS9 Silent p.L723L 0.09 TCGA-K4-A5RH-01 3 72428448 72428448 C G RYBP Missense_Mutation p.E186Q 0.09 deleterious(0.04) benign(0.427) TCGA-K4-A5RH-01 4 145035857 145035857 C T GYPA Missense_Mutation p.E141K 0.19 deleterious(0) probably_damaging(0.969) TCGA-K4-A5RH-01 4 162380432 162380432 C G FSTL5 Missense_Mutation p.D550H 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-K4-A5RH-01 4 164087924 164087924 G A NAF1 5'UTR 0.10 TCGA-K4-A5RH-01 4 174253275 174253275 C T HMGB2 Missense_Mutation p.E196K 0.20 tolerated(0.43) unknown(0) TCGA-K4-A5RH-01 4 174253312 174253312 C T HMGB2 Silent p.K183K 0.19 TCGA-K4-A5RH-01 4 183721364 183721364 G A TENM3 Missense_Mutation p.E2654K 0.20 deleterious(0) possibly_damaging(0.651) TCGA-K4-A5RH-01 4 42895431 42895431 T G GRXCR1 Missense_Mutation p.C50G 0.06 tolerated(0.11) benign(0.021) TCGA-K4-A5RH-01 4 71067186 71067186 C T ODAM Nonsense_Mutation p.Q182* 0.26 TCGA-K4-A5RH-01 5 10465064 10465064 G C ROPN1L 3'UTR 0.05 TCGA-K4-A5RH-01 5 134152289 134152289 C G DDX46 Missense_Mutation p.S869C 0.20 deleterious(0.03) benign(0.401) TCGA-K4-A5RH-01 5 175722261 175722261 C T SIMC1 Nonsense_Mutation p.Q120* 0.30 TCGA-K4-A5RH-01 5 176471400 176471400 G T ZNF346 Missense_Mutation p.R128I 0.28 tolerated(0.18) possibly_damaging(0.885) TCGA-K4-A5RH-01 5 180659709 180659709 G C TRIM41 Silent p.L320L 0.26 TCGA-K4-A5RH-01 5 38406314 38406314 G A EGFLAM Missense_Mutation p.D267N 0.09 deleterious_low_confidence(0.04) benign(0.081) TCGA-K4-A5RH-01 5 38406325 38406325 G A EGFLAM Silent p.L270L 0.09 TCGA-K4-A5RH-01 5 38406338 38406338 G C EGFLAM Missense_Mutation p.E275Q 0.06 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-K4-A5RH-01 5 67522556 67522556 G A PIK3R1 Missense_Mutation p.R18K 0.24 deleterious(0.02) probably_damaging(0.933) TCGA-K4-A5RH-01 5 76640675 76640675 C T PDE8B Intron 0.22 TCGA-K4-A5RH-01 5 893166 893166 C T TRIP13 Missense_Mutation p.S18L 0.14 tolerated(0.2) benign(0.003) TCGA-K4-A5RH-01 5 96498878 96498878 C G RIOK2 Missense_Mutation p.A516P 0.10 tolerated(0.17) benign(0.323) TCGA-K4-A5RH-01 6 102483277 102483277 T C GRIK2 Missense_Mutation p.V716A 0.22 tolerated(0.64) benign(0.021) TCGA-K4-A5RH-01 6 106553639 106553639 C G PRDM1 Nonsense_Mutation p.S535* 0.21 TCGA-K4-A5RH-01 6 117053301 117053301 C G KPNA5 Missense_Mutation p.L479V 0.25 tolerated(0.12) possibly_damaging(0.594) TCGA-K4-A5RH-01 6 136926387 136926387 G A MAP3K5 Missense_Mutation p.P880L 0.20 deleterious(0) probably_damaging(1) TCGA-K4-A5RH-01 6 26093381 26093381 C G HFE Silent p.V309V 0.14 TCGA-K4-A5RH-01 6 28228242 28228242 G A NKAPL Missense_Mutation p.E365K 0.20 deleterious(0) probably_damaging(0.995) TCGA-K4-A5RH-01 6 2955833 2955833 C T SERPINB6 Silent p.V79V 0.29 TCGA-K4-A5RH-01 6 33555493 33555493 C T GGNBP1 Intron 0.23 TCGA-K4-A5RH-01 6 35423591 35423591 C T FANCE Missense_Mutation p.R106W 0.25 tolerated(0.22) benign(0.002) TCGA-K4-A5RH-01 6 41121499 41121499 G T TREML1 Missense_Mutation p.P125T 0.10 tolerated(0.1) benign(0.001) TCGA-K4-A5RH-01 7 129107265 129107265 C G STRIP2 Missense_Mutation p.I617M 0.23 tolerated(0.08) probably_damaging(0.996) TCGA-K4-A5RH-01 7 141773904 141773904 C G MGAM Intron 0.31 TCGA-K4-A5RH-01 7 151874099 151874099 C G KMT2C Missense_Mutation p.Q2813H 0.19 possibly_damaging(0.664) TCGA-K4-A5RH-01 7 158424308 158424308 A C NCAPG2 3'UTR 0.18 TCGA-K4-A5RH-01 7 20418703 20418703 C T ITGB8 Missense_Mutation p.H140Y 0.16 deleterious(0.01) possibly_damaging(0.511) TCGA-K4-A5RH-01 7 20691172 20691172 G A ABCB5 Missense_Mutation p.D488N 0.13 tolerated(0.46) benign(0.019) TCGA-K4-A5RH-01 7 2969703 2969703 C T CARD11 Missense_Mutation p.G526R 0.14 tolerated(0.22) benign(0.197) TCGA-K4-A5RH-01 7 44664045 44664045 C G OGDH Missense_Mutation p.Q35E 0.34 tolerated(0.52) benign(0.002) TCGA-K4-A5RH-01 7 5760784 5760784 C A RNF216 Missense_Mutation p.K508N 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-K4-A5RH-01 7 72954277 72954277 G T BCL7B Missense_Mutation p.A124E 0.07 tolerated(0.06) benign(0.154) TCGA-K4-A5RH-01 7 8791471 8791471 G T NXPH1 3'UTR 0.20 TCGA-K4-A5RH-01 7 98645504 98645504 G A SMURF1 Missense_Mutation p.H345Y 0.24 tolerated(1) benign(0.105) TCGA-K4-A5RH-01 8 101620744 101620744 G A SNX31 Missense_Mutation p.A220V 0.29 deleterious(0) probably_damaging(0.97) TCGA-K4-A5RH-01 8 110587548 110587548 C T SYBU Missense_Mutation p.D527N 0.24 tolerated(0.51) benign(0.187) TCGA-K4-A5RH-01 8 141561491 141561491 C T AGO2 Silent p.R438R 0.15 TCGA-K4-A5RH-01 8 145151130 145151130 G T CYC1 Nonsense_Mutation p.E144* 0.12 TCGA-K4-A5RH-01 8 96275953 96275953 C T C8orf37 Missense_Mutation p.E69K 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A5RH-01 9 107602650 107602650 G A ABCA1 Missense_Mutation p.L322F 0.14 tolerated(0.5) benign(0.414) TCGA-K4-A5RH-01 9 110249346 110249346 C G KLF4 Missense_Mutation p.K409N 0.18 deleterious(0) benign(0.334) TCGA-K4-A5RH-01 9 110249711 110249711 C G KLF4 Missense_Mutation p.E322Q 0.13 tolerated(0.11) possibly_damaging(0.806) TCGA-K4-A5RH-01 9 123742477 123742477 G - C5 Frame_Shift_Del p.P1181Qfs*32 0.16 TCGA-K4-A5RH-01 9 140289794 140289794 G A EXD3 Missense_Mutation p.P6S 0.16 deleterious_low_confidence(0.03) unknown(0) TCGA-K4-A5RH-01 9 18777120 18777120 C T ADAMTSL1 Missense_Mutation p.R965C 0.09 deleterious(0) benign(0.258) TCGA-K4-A5RH-01 9 34098449 34098449 C T DCAF12 Missense_Mutation p.R223K 0.14 tolerated(0.92) benign(0.016) TCGA-K4-A5RH-01 9 84607978 84607978 G C SPATA31D1 Missense_Mutation p.E865Q 0.22 tolerated(0.53) possibly_damaging(0.544) TCGA-K4-A5RH-01 X 140995261 140995261 C T MAGEC1 Missense_Mutation p.P691S 0.25 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-K4-A5RH-01 X 153588591 153588591 G A FLNA Missense_Mutation p.A1191V 0.22 deleterious(0.01) possibly_damaging(0.641) TCGA-K4-A5RH-01 X 153588592 153588592 C G FLNA Missense_Mutation p.A1191P 0.22 deleterious(0.05) possibly_damaging(0.493) TCGA-K4-A5RH-01 X 153608140 153608140 C G EMD Missense_Mutation p.S58C 0.30 tolerated(0.07) benign(0.02) TCGA-K4-A5RH-01 X 3240447 3240447 G A MXRA5 Silent p.I1093I 0.35 TCGA-K4-A5RH-01 X 52841612 52841612 T A XAGE5 Missense_Mutation p.Y8N 0.58 tolerated(0.27) probably_damaging(0.961) TCGA-K4-A5RH-01 X 55047547 55047547 G A ALAS2 Silent p.S192S 0.55 TCGA-K4-A5RH-01 X 63412305 63412305 C T AMER1 Missense_Mutation p.E288K 0.16 tolerated(0.11) benign(0.01) TCGA-K4-A5RI-01 10 1230814 1230814 C T ADARB2 Missense_Mutation p.R677Q 0.22 tolerated(0.24) benign(0.004) TCGA-K4-A5RI-01 10 125804238 125804238 G A CHST15 Silent p.F248F 0.76 TCGA-K4-A5RI-01 10 26822398 26822398 G C APBB1IP Missense_Mutation p.E282Q 0.67 deleterious(0.02) possibly_damaging(0.491) TCGA-K4-A5RI-01 10 375376 375376 G C DIP2C Silent p.L1250L 0.18 TCGA-K4-A5RI-01 10 48390396 48390396 C T RBP3 Missense_Mutation p.G161D 0.44 tolerated(1) benign(0.32) TCGA-K4-A5RI-01 10 64414652 64414652 G A ZNF365 Intron 0.69 TCGA-K4-A5RI-01 10 64573059 64573059 C T EGR2 Missense_Mutation p.V447M 0.75 tolerated_low_confidence(0.09) unknown(0) TCGA-K4-A5RI-01 10 69961599 69961599 G A MYPN Silent p.K1169K 0.06 TCGA-K4-A5RI-01 10 71139652 71139652 C G HK1 Missense_Mutation p.L360V 0.69 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 10 71139703 71139703 C T HK1 Missense_Mutation p.H377Y 0.63 tolerated(0.49) possibly_damaging(0.562) TCGA-K4-A5RI-01 10 71144090 71144090 G A HK1 Silent p.E528E 0.68 TCGA-K4-A5RI-01 10 78870024 78870024 G C KCNMA1 Silent p.L346L 0.73 TCGA-K4-A5RI-01 10 98355378 98355378 C G PIK3AP1 Missense_Mutation p.E792Q 0.10 tolerated(0.48) benign(0.001) TCGA-K4-A5RI-01 11 113934410 113934410 G A ZBTB16 Missense_Mutation p.D130N 0.61 tolerated(0.1) benign(0.073) TCGA-K4-A5RI-01 11 33564980 33564980 C T KIAA1549L Missense_Mutation p.P327L 0.65 tolerated_low_confidence(1) benign(0) TCGA-K4-A5RI-01 11 55371335 55371335 A T OR4C11 Missense_Mutation p.I172N 0.83 deleterious(0) probably_damaging(0.995) TCGA-K4-A5RI-01 11 5878419 5878419 G T OR52E8 Missense_Mutation p.L172M 0.59 deleterious(0) possibly_damaging(0.789) TCGA-K4-A5RI-01 11 64507278 64507278 G A RASGRP2 Nonsense_Mutation p.Q176* 0.76 TCGA-K4-A5RI-01 12 103699960 103699960 T G C12orf42 Silent p.P141P 0.12 TCGA-K4-A5RI-01 12 21531175 21531175 C G IAPP Missense_Mutation p.Q29E 0.52 tolerated(0.08) benign(0.334) TCGA-K4-A5RI-01 12 3039495 3039495 C G TULP3 Nonsense_Mutation p.S159* 0.14 TCGA-K4-A5RI-01 12 3040253 3040253 C T TULP3 Silent p.L181L 0.27 TCGA-K4-A5RI-01 12 49416085 49416085 T G KMT2D Missense_Mutation p.T5464P 0.24 unknown(0) TCGA-K4-A5RI-01 12 49420408 49420408 T C KMT2D Missense_Mutation p.H5114R 0.48 unknown(0) TCGA-K4-A5RI-01 12 50497821 50497821 G C GPD1 5'UTR 0.49 TCGA-K4-A5RI-01 12 54059203 54059203 A G ATP5G2 Silent p.S164S 0.24 TCGA-K4-A5RI-01 12 58124375 58124375 G A AGAP2 Silent p.S777S 0.22 TCGA-K4-A5RI-01 12 69233624 69233624 C G MDM2 Missense_Mutation p.P497A 0.41 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-K4-A5RI-01 12 76793656 76793656 T G OSBPL8 Missense_Mutation p.L155F 0.29 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 13 88327797 88327797 T A SLITRK5 Missense_Mutation p.C52S 0.28 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 14 20853181 20853181 G C TEP1 Missense_Mutation p.Q1024E 0.23 tolerated(0.06) benign(0.004) TCGA-K4-A5RI-01 14 31592245 31592245 C A HECTD1 Missense_Mutation p.D1664Y 0.26 deleterious(0) probably_damaging(0.99) TCGA-K4-A5RI-01 14 60194249 60194249 C A RTN1 Nonsense_Mutation p.E385* 0.18 TCGA-K4-A5RI-01 14 63888717 63888717 G C PPP2R5E Missense_Mutation p.H150Q 0.19 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 14 64457709 64457709 C T SYNE2 Missense_Mutation p.S841L 0.30 benign(0.153) TCGA-K4-A5RI-01 15 31234324 31234324 G A FAN1 3'UTR 0.31 TCGA-K4-A5RI-01 15 42149523 42149523 G A SPTBN5 Missense_Mutation p.A2845V 0.43 benign(0.311) TCGA-K4-A5RI-01 15 42149524 42149524 C G SPTBN5 Missense_Mutation p.A2845P 0.38 possibly_damaging(0.735) TCGA-K4-A5RI-01 15 77240888 77240888 G A RCN2 Missense_Mutation p.E266K 0.36 tolerated(0.06) possibly_damaging(0.836) TCGA-K4-A5RI-01 15 79058041 79058041 G T ADAMTS7 Silent p.P1404P 0.42 TCGA-K4-A5RI-01 15 82336248 82336249 - G MEX3B Frame_Shift_Ins p.S322* 0.26 TCGA-K4-A5RI-01 15 94882606 94882606 G A MCTP2 Nonsense_Mutation p.W242* 0.36 TCGA-K4-A5RI-01 16 27761295 27761295 C T KIAA0556 Missense_Mutation p.P1005L 0.32 deleterious(0.01) possibly_damaging(0.808) TCGA-K4-A5RI-01 16 30960706 30960706 C T ORAI3 Silent p.H32H 0.31 TCGA-K4-A5RI-01 16 67696156 67696156 T C PARD6A Missense_Mutation p.L216P 0.09 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RI-01 16 68324421 68324421 G T SLC7A6 Nonsense_Mutation p.E258* 0.29 TCGA-K4-A5RI-01 16 68719190 68719190 C T CDH3 Missense_Mutation p.R503C 0.34 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 17 10346754 10346754 G A MYH4 Nonsense_Mutation p.Q1920* 0.58 TCGA-K4-A5RI-01 17 12626238 12626239 - A MYOCD Frame_Shift_Ins p.I112Nfs*29 0.32 TCGA-K4-A5RI-01 17 33464878 33464878 C A NLE1 Missense_Mutation p.W164C 0.05 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 17 33680130 33680130 G A SLFN11 Missense_Mutation p.R651W 0.33 deleterious(0.02) probably_damaging(1) TCGA-K4-A5RI-01 17 60744819 60744819 A - MRC2 Frame_Shift_Del p.N348Tfs*31 0.26 TCGA-K4-A5RI-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.67 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 18 46385876 46385876 G A CTIF Silent p.L583L 0.34 TCGA-K4-A5RI-01 18 55996293 55996293 C T NEDD4L Silent p.F249F 0.34 TCGA-K4-A5RI-01 18 63481823 63481823 C T CDH7 Missense_Mutation p.S203L 0.28 deleterious(0) probably_damaging(0.98) TCGA-K4-A5RI-01 18 71740685 71740685 G T FBXO15 3'UTR 0.32 TCGA-K4-A5RI-01 19 42526165 42526165 G A GRIK5 Missense_Mutation p.P544L 0.47 tolerated(0.31) probably_damaging(1) TCGA-K4-A5RI-01 19 46317933 46317933 T G RSPH6A Silent p.R168R 0.35 TCGA-K4-A5RI-01 19 47423722 47423722 G C ARHGAP35 Missense_Mutation p.R597T 0.39 tolerated(0.11) possibly_damaging(0.718) TCGA-K4-A5RI-01 19 47986413 47986413 C G KPTN Intron 0.32 TCGA-K4-A5RI-01 19 54515344 54515344 C T CACNG6 Silent p.G228G 0.32 TCGA-K4-A5RI-01 19 57669696 57669696 T G DUXA Missense_Mutation p.Q146H 0.06 deleterious(0) probably_damaging(0.998) TCGA-K4-A5RI-01 19 58773518 58773518 G - ZNF544 Frame_Shift_Del p.G516Efs*76 0.23 TCGA-K4-A5RI-01 19 886120 886120 C A MED16 Nonsense_Mutation p.E177* 0.38 TCGA-K4-A5RI-01 19 9090041 9090041 C T MUC16 Missense_Mutation p.G592R 0.36 unknown(0) TCGA-K4-A5RI-01 19 9868511 9868511 C A ZNF846 Missense_Mutation p.R414S 0.39 deleterious(0) possibly_damaging(0.502) TCGA-K4-A5RI-01 1 102290729 102290729 A T OLFM3 Missense_Mutation p.L149I 0.18 tolerated(0.23) probably_damaging(0.978) TCGA-K4-A5RI-01 1 109795843 109795843 C T CELSR2 Nonsense_Mutation p.R1048* 0.09 TCGA-K4-A5RI-01 1 110734728 110734728 C T SLC6A17 Silent p.A333A 0.23 TCGA-K4-A5RI-01 1 113058768 113058768 G A WNT2B Missense_Mutation p.R137Q 0.57 deleterious(0.01) possibly_damaging(0.643) TCGA-K4-A5RI-01 1 145075755 145075755 C T PDE4DIP Silent p.A36A 0.08 TCGA-K4-A5RI-01 1 169775154 169775154 C G C1orf112 Missense_Mutation p.S163C 0.30 deleterious(0.01) possibly_damaging(0.882) TCGA-K4-A5RI-01 1 175086321 175086321 C T TNN Missense_Mutation p.A789V 0.52 tolerated(0.16) benign(0.033) TCGA-K4-A5RI-01 1 176525428 176525428 T A PAPPA2 5'UTR 0.25 TCGA-K4-A5RI-01 1 183212355 183212355 C T LAMC2 Silent p.I1134I 0.33 TCGA-K4-A5RI-01 1 186325563 186325563 G A TPR Silent p.L581L 0.41 TCGA-K4-A5RI-01 1 190068111 190068111 G T BRINP3 Silent p.A446A 0.07 TCGA-K4-A5RI-01 1 197112640 197112640 A G ASPM Missense_Mutation p.S248P 0.30 deleterious(0.01) possibly_damaging(0.723) TCGA-K4-A5RI-01 1 203138163 203138163 C T MYBPH Missense_Mutation p.A430T 0.05 tolerated(0.27) benign(0.032) TCGA-K4-A5RI-01 1 207095239 207095239 G A FAIM3 5'UTR 0.54 TCGA-K4-A5RI-01 1 220246189 220246189 T C BPNT1 Intron 0.18 TCGA-K4-A5RI-01 1 226580641 226580641 C A PARP1 Intron 0.63 TCGA-K4-A5RI-01 1 228596064 228596064 G A TRIM17 Silent p.F424F 0.26 TCGA-K4-A5RI-01 1 240656298 240656298 C T GREM2 Missense_Mutation p.V160M 0.20 deleterious(0.03) probably_damaging(0.994) TCGA-K4-A5RI-01 1 247323097 247323097 C T ZNF124 Missense_Mutation p.D17N 0.23 deleterious(0) probably_damaging(0.924) TCGA-K4-A5RI-01 1 248224921 248224921 A G OR2L3 Nonstop_Mutation p.*313Wext*? 0.53 TCGA-K4-A5RI-01 1 2520386 2520386 C T FAM213B Silent p.F192F 0.04 TCGA-K4-A5RI-01 1 28218706 28218706 C T RPA2 Missense_Mutation p.D261N 0.31 tolerated(0.08) probably_damaging(0.969) TCGA-K4-A5RI-01 1 29189573 29189573 G T OPRD1 Silent p.A299A 0.41 TCGA-K4-A5RI-01 1 36226371 36226371 G A CLSPN Missense_Mutation p.S384L 0.09 tolerated(0.18) benign(0.426) TCGA-K4-A5RI-01 1 36752557 36752557 G C THRAP3 Silent p.L242L 0.05 TCGA-K4-A5RI-01 1 52276007 52276007 C T NRD1 Missense_Mutation p.E685K 0.23 tolerated(0.1) benign(0.067) TCGA-K4-A5RI-01 1 76262801 76262801 C A MSH4 Nonsense_Mutation p.S44* 0.22 TCGA-K4-A5RI-01 1 76878070 76878070 T C ST6GALNAC3 Silent p.D197D 0.40 TCGA-K4-A5RI-01 1 85036361 85036361 C G CTBS Missense_Mutation p.D74H 0.20 deleterious(0) possibly_damaging(0.802) TCGA-K4-A5RI-01 1 86952415 86952415 C T CLCA1 Silent p.S387S 0.45 TCGA-K4-A5RI-01 1 91404887 91404887 G A ZNF644 Missense_Mutation p.S675L 0.29 deleterious(0.01) benign(0.066) TCGA-K4-A5RI-01 1 91778977 91778977 T C HFM1 Missense_Mutation p.Q1107R 0.28 tolerated(0.27) benign(0.001) TCGA-K4-A5RI-01 20 35532648 35532663 TCCTCCTGGAAAACAC - SAMHD1 Splice_Site p.X471_splice 0.34 TCGA-K4-A5RI-01 20 42249548 42249548 G A IFT52 Missense_Mutation p.D251N 0.08 deleterious(0.02) benign(0.228) TCGA-K4-A5RI-01 20 61834432 61834433 - G YTHDF1 Frame_Shift_Ins p.Q287Pfs*62 0.43 TCGA-K4-A5RI-01 21 34839345 34839345 C T TMEM50B Missense_Mutation p.G62S 0.82 deleterious(0.04) probably_damaging(0.937) TCGA-K4-A5RI-01 22 41318440 41318440 A T XPNPEP3 Missense_Mutation p.M387L 0.34 tolerated(0.72) benign(0) TCGA-K4-A5RI-01 2 10925092 10925092 C G PDIA6 Missense_Mutation p.E408Q 0.64 tolerated(0.3) benign(0.005) TCGA-K4-A5RI-01 2 163136595 163136595 T C IFIH1 Missense_Mutation p.I518V 0.71 deleterious(0.02) possibly_damaging(0.817) TCGA-K4-A5RI-01 2 164468282 164468282 C G FIGN Missense_Mutation p.Q20H 0.77 deleterious(0) probably_damaging(0.969) TCGA-K4-A5RI-01 2 178098944 178098944 C G NFE2L2 Missense_Mutation p.R34P 0.87 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 2 191873690 191873690 T A STAT1 Missense_Mutation p.Q91L 0.78 deleterious(0) possibly_damaging(0.592) TCGA-K4-A5RI-01 2 198948771 198948771 A T PLCL1 Missense_Mutation p.N177I 0.07 deleterious(0.02) benign(0.275) TCGA-K4-A5RI-01 2 218699820 218699820 T A TNS1 Missense_Mutation p.S967C 0.77 deleterious(0.02) possibly_damaging(0.548) TCGA-K4-A5RI-01 2 224824694 224824694 C A MRPL44 Missense_Mutation p.P208H 0.06 deleterious(0.01) possibly_damaging(0.749) TCGA-K4-A5RI-01 2 237374293 237374293 G A IQCA1 Missense_Mutation p.R261C 0.76 tolerated(0.07) benign(0.006) TCGA-K4-A5RI-01 2 241706396 241706396 C G KIF1A Silent p.L540L 0.67 TCGA-K4-A5RI-01 2 39552931 39552931 A G MAP4K3 Silent p.F249F 0.74 TCGA-K4-A5RI-01 2 50282164 50282164 C T NRXN1 Missense_Mutation p.R1286H 0.36 deleterious(0) probably_damaging(0.998) TCGA-K4-A5RI-01 2 74655448 74655448 G A RTKN Missense_Mutation p.P345S 0.48 tolerated(0.07) benign(0.007) TCGA-K4-A5RI-01 3 107519980 107519980 A G BBX Missense_Mutation p.K864E 0.41 tolerated(0.17) benign(0.304) TCGA-K4-A5RI-01 3 126915882 126915882 G T C3orf56 Silent p.P118P 0.24 TCGA-K4-A5RI-01 3 136016889 136016889 C T PCCB Missense_Mutation p.P307S 0.22 deleterious_low_confidence(0.01) benign(0.261) TCGA-K4-A5RI-01 3 137483655 137483655 G T SOX14 Missense_Mutation p.R10L 0.29 deleterious(0) probably_damaging(1) TCGA-K4-A5RI-01 3 140785230 140785230 G A SPSB4 Missense_Mutation p.R95H 0.42 deleterious(0.02) benign(0.151) TCGA-K4-A5RI-01 3 157082228 157082228 C G VEPH1 Missense_Mutation p.D401H 0.22 deleterious(0.02) benign(0.322) TCGA-K4-A5RI-01 3 167189381 167189381 G A SERPINI2 Missense_Mutation p.S81L 0.33 tolerated(0.31) benign(0.17) TCGA-K4-A5RI-01 3 169540010 169540010 C T LRRIQ4 Silent p.L101L 0.21 TCGA-K4-A5RI-01 3 19384101 19384101 A G KCNH8 Silent p.R155R 0.50 TCGA-K4-A5RI-01 3 49004694 49004694 A C ARIH2 Missense_Mutation p.D175A 0.61 tolerated(0.22) possibly_damaging(0.696) TCGA-K4-A5RI-01 4 114278283 114278283 G C ANK2 Missense_Mutation p.A2837P 0.31 benign(0.007) TCGA-K4-A5RI-01 4 126402893 126402893 G T FAT4 Missense_Mutation p.K4272N 0.38 benign(0.111) TCGA-K4-A5RI-01 4 134073227 134073227 C A PCDH10 Silent p.V644V 0.35 TCGA-K4-A5RI-01 4 166935684 166935684 A T TLL1 Silent p.A338A 0.31 TCGA-K4-A5RI-01 4 189060867 189060867 C A TRIML1 Missense_Mutation p.S52Y 0.04 deleterious(0.01) probably_damaging(0.941) TCGA-K4-A5RI-01 4 39482195 39482195 G A LIAS 3'Flank 0.35 TCGA-K4-A5RI-01 4 70866582 70866582 T C STATH Silent p.Y35Y 0.11 TCGA-K4-A5RI-01 5 140209532 140209532 G A PCDHA6 Missense_Mutation p.R619H 0.72 tolerated_low_confidence(0.12) benign(0.152) TCGA-K4-A5RI-01 5 140562884 140562884 G T PCDHB16 Missense_Mutation p.Q250H 0.08 deleterious_low_confidence(0.04) benign(0.028) TCGA-K4-A5RI-01 5 141694697 141694697 C T SPRY4 Missense_Mutation p.V16I 0.34 tolerated_low_confidence(0.19) benign(0) TCGA-K4-A5RI-01 5 15936965 15936965 C T FBXL7 Silent p.N382N 0.17 TCGA-K4-A5RI-01 5 31267661 31267661 G A CDH6 Silent p.R27R 0.08 TCGA-K4-A5RI-01 5 3596419 3596419 C T IRX1 Missense_Mutation p.A67V 0.21 tolerated(0.43) possibly_damaging(0.499) TCGA-K4-A5RI-01 5 45262642 45262642 G T HCN1 Missense_Mutation p.T685K 0.28 tolerated_low_confidence(0.65) benign(0.108) TCGA-K4-A5RI-01 5 5303786 5303786 C T ADAMTS16 Silent p.T1031T 0.16 TCGA-K4-A5RI-01 5 64824348 64824348 G C CENPK Silent p.L176L 0.55 TCGA-K4-A5RI-01 6 135315010 135315010 T G HBS1L Silent p.G323G 0.49 TCGA-K4-A5RI-01 6 149893662 149893662 A G GINM1 Missense_Mutation p.Y67C 0.27 deleterious(0) probably_damaging(0.986) TCGA-K4-A5RI-01 6 149983114 149983114 C T LATS1 Nonsense_Mutation p.W1048* 0.30 TCGA-K4-A5RI-01 6 3106258 3106259 - T RIPK1 Frame_Shift_Ins p.M517Ifs*11 0.31 TCGA-K4-A5RI-01 6 32021483 32021483 C T TNXB Splice_Site p.X2823_splice 0.38 TCGA-K4-A5RI-01 6 46830810 46830810 G T GPR116 Missense_Mutation p.P672T 0.31 tolerated(0.07) benign(0.066) TCGA-K4-A5RI-01 6 76728577 76728577 T C IMPG1 Splice_Site p.X223_splice 0.35 TCGA-K4-A5RI-01 7 100859192 100859192 C T PLOD3 Silent p.L204L 0.24 TCGA-K4-A5RI-01 7 11485898 11485898 C T THSD7A Missense_Mutation p.E952K 0.22 deleterious(0) possibly_damaging(0.611) TCGA-K4-A5RI-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.71 deleterious(0) probably_damaging(0.991) TCGA-K4-A5RI-01 7 1586554 1586554 C T TMEM184A 3'UTR 0.21 TCGA-K4-A5RI-01 7 4874345 4874345 C T RADIL Missense_Mutation p.A437T 0.48 deleterious(0.03) possibly_damaging(0.465) TCGA-K4-A5RI-01 7 5104695 5104695 G C RBAK Missense_Mutation p.E536D 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-K4-A5RI-01 7 5104735 5104735 G C RBAK Missense_Mutation p.E550Q 0.52 tolerated(1) benign(0.401) TCGA-K4-A5RI-01 7 5104863 5104863 G C RBAK Missense_Mutation p.E592D 0.59 deleterious(0) probably_damaging(0.986) TCGA-K4-A5RI-01 7 5104973 5104973 G A RBAK Missense_Mutation p.G629E 0.47 tolerated(0.1) probably_damaging(1) TCGA-K4-A5RI-01 7 64439025 64439025 T - ZNF117 Frame_Shift_Del p.E309Nfs*45 0.15 TCGA-K4-A5RI-01 7 73245345 73245345 C T CLDN4 5'UTR 0.27 TCGA-K4-A5RI-01 7 82585721 82585721 A T PCLO Missense_Mutation p.S1516R 0.53 unknown(0) TCGA-K4-A5RI-01 8 104388097 104388097 G A CTHRC1 Silent p.L94L 0.21 TCGA-K4-A5RI-01 8 104388110 104388110 G C CTHRC1 Missense_Mutation p.E99Q 0.19 tolerated(0.17) possibly_damaging(0.777) TCGA-K4-A5RI-01 8 116430589 116430589 T A TRPS1 Missense_Mutation p.N931I 0.56 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RI-01 8 125463100 125463100 C T TRMT12 5'UTR 0.69 TCGA-K4-A5RI-01 8 145616824 145616824 G A ADCK5 Silent p.E281E 0.38 TCGA-K4-A5RI-01 8 145737860 145737860 G C RECQL4 Silent p.V990V 0.23 TCGA-K4-A5RI-01 9 102590825 102590825 C G NR4A3 Missense_Mutation p.I178M 0.65 tolerated(0.35) benign(0.013) TCGA-K4-A5RI-01 X 106418402 106418402 A G NUP62CL 5'UTR 0.53 TCGA-K4-A5RI-01 X 113865319 113865319 A T HTR2C Intron 0.16 TCGA-K4-A5RI-01 X 135303037 135303037 T G MAP7D3 Silent p.L791L 0.26 TCGA-K4-A5RI-01 X 144905635 144905635 T C SLITRK2 Silent p.H564H 0.54 TCGA-K4-A5RI-01 X 152686420 152686420 C A ZFP92 Silent p.L195L 0.59 TCGA-K4-A5RI-01 X 153596052 153596052 C T FLNA Missense_Mutation p.R226Q 0.56 deleterious(0.01) possibly_damaging(0.897) TCGA-K4-A5RI-01 X 1584477 1584477 G C P2RY8 Silent p.L325L 0.58 TCGA-K4-A5RI-01 X 34961523 34961523 C T FAM47B Missense_Mutation p.P192L 0.20 deleterious(0.01) probably_damaging(0.921) TCGA-K4-A5RI-01 X 37027114 37027114 C T FAM47C Missense_Mutation p.R211C 0.47 tolerated(0.3) benign(0.008) TCGA-K4-A5RI-01 X 47101903 47101903 G A USP11 Silent p.T533T 0.11 TCGA-K4-A5RI-01 X 48687774 48687774 G C ERAS Missense_Mutation p.E81Q 0.18 tolerated(1) possibly_damaging(0.846) TCGA-K4-A5RI-01 X 70325931 70325931 G A CXorf65 Missense_Mutation p.P57S 0.11 tolerated(0.09) probably_damaging(0.932) TCGA-K4-A5RI-01 X 91873797 91873797 C G PCDH11X Missense_Mutation p.T1301R 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-K4-A5RJ-01 10 108378001 108378001 G T SORCS1 Silent p.S942S 0.35 TCGA-K4-A5RJ-01 10 108378002 108378002 G T SORCS1 Missense_Mutation p.S942Y 0.35 tolerated(0.07) possibly_damaging(0.905) TCGA-K4-A5RJ-01 10 111635293 111635293 G C XPNPEP1 Missense_Mutation p.Q462E 0.16 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 10 16957034 16957034 C T CUBN Missense_Mutation p.E2450K 0.09 deleterious(0.02) benign(0.001) TCGA-K4-A5RJ-01 10 21806587 21806587 C G SKIDA1 Missense_Mutation p.K55N 0.37 deleterious(0) probably_damaging(0.937) TCGA-K4-A5RJ-01 10 21806754 21806754 C T SKIDA1 5'UTR 0.51 TCGA-K4-A5RJ-01 10 27538975 27538975 G A RP11-85G18.6 Intron 0.14 TCGA-K4-A5RJ-01 10 34636986 34636986 C T PARD3 Missense_Mutation p.D709N 0.13 tolerated(0.27) benign(0.049) TCGA-K4-A5RJ-01 10 38343586 38343586 C T ZNF33A Silent p.L178L 0.33 TCGA-K4-A5RJ-01 10 48371135 48371135 C T ZNF488 Silent p.L201L 0.12 TCGA-K4-A5RJ-01 10 518408 518408 G A DIP2C Missense_Mutation p.S80L 0.26 tolerated(0.52) probably_damaging(0.966) TCGA-K4-A5RJ-01 10 7763687 7763687 G A ITIH2 Missense_Mutation p.E272K 0.38 tolerated(0.06) benign(0.071) TCGA-K4-A5RJ-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.27 TCGA-K4-A5RJ-01 11 103173929 103173929 C T DYNC2H1 Nonsense_Mutation p.Q3742* 0.18 TCGA-K4-A5RJ-01 11 103907712 103907712 C T PDGFD Intron 0.24 TCGA-K4-A5RJ-01 11 111948970 111948970 G A C11orf57 Missense_Mutation p.R34K 0.20 deleterious(0.03) benign(0.325) TCGA-K4-A5RJ-01 11 114568992 114568992 C G NXPE2 Missense_Mutation p.Q120E 0.21 deleterious(0.01) benign(0.099) TCGA-K4-A5RJ-01 11 117352705 117352705 G A DSCAML1 Silent p.N904N 0.19 TCGA-K4-A5RJ-01 11 117969794 117969794 C T TMPRSS4 Silent p.I46I 0.21 TCGA-K4-A5RJ-01 11 118373371 118373371 C G KMT2A Nonsense_Mutation p.S2255* 0.14 TCGA-K4-A5RJ-01 11 11964244 11964244 C G USP47 Silent p.L824L 0.23 TCGA-K4-A5RJ-01 11 11964323 11964323 C A USP47 Missense_Mutation p.Q851K 0.19 tolerated_low_confidence(0.66) benign(0.044) TCGA-K4-A5RJ-01 11 121440930 121440930 G C SORL1 Missense_Mutation p.W1096C 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.704) TCGA-K4-A5RJ-01 11 124266454 124266454 C G OR8B3 Missense_Mutation p.G265A 0.07 tolerated_low_confidence(0.31) possibly_damaging(0.737) TCGA-K4-A5RJ-01 11 124294198 124294198 G A OR8B4 Silent p.S190S 0.15 TCGA-K4-A5RJ-01 11 124845101 124845101 G C CCDC15 Missense_Mutation p.R209T 0.14 deleterious(0) benign(0.137) TCGA-K4-A5RJ-01 11 14666451 14666451 G T PDE3B Missense_Mutation p.R277L 0.24 deleterious(0.05) benign(0.198) TCGA-K4-A5RJ-01 11 18290776 18290776 G T SAA1 Missense_Mutation p.M42I 0.09 tolerated(0.06) probably_damaging(0.999) TCGA-K4-A5RJ-01 11 2155433 2155433 C T IGF2 Intron 0.20 TCGA-K4-A5RJ-01 11 27389349 27389349 G C LGR4 3'UTR 0.24 TCGA-K4-A5RJ-01 11 3765742 3765742 C A NUP98 Missense_Mutation p.V469L 0.24 tolerated(0.22) benign(0.132) TCGA-K4-A5RJ-01 11 48238984 48238984 C G OR4B1 Missense_Mutation p.S208C 0.22 tolerated(0.19) probably_damaging(0.958) TCGA-K4-A5RJ-01 11 55541161 55541161 T C OR5D13 Missense_Mutation p.L83P 0.24 deleterious(0) possibly_damaging(0.623) TCGA-K4-A5RJ-01 11 57243901 57243901 T A RTN4RL2 Silent p.A260A 0.17 TCGA-K4-A5RJ-01 11 57457550 57457550 G C ZDHHC5 Silent p.R144R 0.27 TCGA-K4-A5RJ-01 11 57457644 57457644 G C ZDHHC5 Missense_Mutation p.E176Q 0.19 tolerated(0.21) benign(0.013) TCGA-K4-A5RJ-01 11 59611371 59611371 G C GIF Silent p.L79L 0.19 TCGA-K4-A5RJ-01 11 61018890 61018890 G C PGA5 3'UTR 0.19 TCGA-K4-A5RJ-01 11 620145 620145 G A CDHR5 Silent p.F300F 0.26 TCGA-K4-A5RJ-01 11 62341379 62341379 G C EEF1G 5'UTR 0.14 TCGA-K4-A5RJ-01 11 62554931 62554931 G C TMEM179B Missense_Mutation p.E10Q 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-K4-A5RJ-01 11 62558199 62558199 G A TMEM223 Silent p.L169L 0.21 TCGA-K4-A5RJ-01 11 6290917 6290917 G A CCKBR Missense_Mutation p.R57K 0.22 tolerated(0.07) possibly_damaging(0.459) TCGA-K4-A5RJ-01 11 6292373 6292373 G A CCKBR Missense_Mutation p.G315E 0.28 tolerated(1) benign(0.01) TCGA-K4-A5RJ-01 11 64067012 64067012 C G KCNK4 Silent p.P332P 0.23 TCGA-K4-A5RJ-01 11 6413422 6413422 G A SMPD1 Intron 0.34 TCGA-K4-A5RJ-01 11 64604481 64604481 C G CDC42BPG Missense_Mutation p.E406Q 0.18 tolerated(0.16) benign(0.021) TCGA-K4-A5RJ-01 11 65409931 65409931 C T SIPA1 Intron 0.11 TCGA-K4-A5RJ-01 11 65829180 65829180 G A SF3B2 Silent p.L601L 0.22 TCGA-K4-A5RJ-01 11 66133976 66133976 C G SLC29A2 Missense_Mutation p.E265Q 0.32 tolerated(0.18) possibly_damaging(0.88) TCGA-K4-A5RJ-01 11 6622489 6622489 G C RRP8 Silent p.L269L 0.18 TCGA-K4-A5RJ-01 11 66329733 66329733 G A CTSF 3'Flank 0.18 TCGA-K4-A5RJ-01 11 66358413 66358413 C A CCDC87 Nonsense_Mutation p.E692* 0.20 TCGA-K4-A5RJ-01 11 7672106 7672106 C T PPFIBP2 Silent p.S719S 0.24 TCGA-K4-A5RJ-01 11 76867748 76867748 C A MYO7A Silent p.I171I 0.20 TCGA-K4-A5RJ-01 11 77775095 77775095 C T THRSP Silent p.L56L 0.22 TCGA-K4-A5RJ-01 11 9215046 9215046 G C DENND5A Missense_Mutation p.Q378E 0.12 tolerated(0.28) possibly_damaging(0.739) TCGA-K4-A5RJ-01 12 100431461 100431461 C G UHRF1BP1L Missense_Mutation p.E1450Q 0.09 deleterious(0.01) possibly_damaging(0.786) TCGA-K4-A5RJ-01 12 101761658 101761658 G C UTP20 Missense_Mutation p.K2096N 0.11 deleterious(0) probably_damaging(0.996) TCGA-K4-A5RJ-01 12 112082137 112082137 G A BRAP Silent p.L549L 0.25 TCGA-K4-A5RJ-01 12 120572126 120572126 G C GCN1L1 Nonsense_Mutation p.S2429* 0.24 TCGA-K4-A5RJ-01 12 122720405 122720405 C G VPS33A Missense_Mutation p.Q456H 0.32 deleterious(0.02) benign(0.412) TCGA-K4-A5RJ-01 12 122845549 122845549 G A CLIP1 Missense_Mutation p.S321L 0.20 deleterious(0) probably_damaging(0.979) TCGA-K4-A5RJ-01 12 123286152 123286152 C G CCDC62 Missense_Mutation p.Q487E 0.36 tolerated(0.09) benign(0.234) TCGA-K4-A5RJ-01 12 123463363 123463363 C A OGFOD2 Missense_Mutation p.Q139K 0.08 tolerated(0.12) benign(0.015) TCGA-K4-A5RJ-01 12 123900378 123900378 A G RILPL2 3'UTR 0.27 TCGA-K4-A5RJ-01 12 21168674 21168674 C T SLCO1B7 Silent p.S15S 0.27 TCGA-K4-A5RJ-01 12 26383783 26383783 C T SSPN Missense_Mutation p.S169L 0.18 tolerated(0.18) benign(0.283) TCGA-K4-A5RJ-01 12 49445149 49445149 G - KMT2D Frame_Shift_Del p.Q773Sfs*157 0.17 TCGA-K4-A5RJ-01 12 52467471 52467471 G C C12orf44 Missense_Mutation p.E13Q 0.18 deleterious(0) probably_damaging(0.952) TCGA-K4-A5RJ-01 12 52467558 52467558 G C C12orf44 Missense_Mutation p.E42Q 0.20 deleterious(0.01) possibly_damaging(0.641) TCGA-K4-A5RJ-01 12 53663123 53663123 C T ESPL1 Missense_Mutation p.R133C 0.17 tolerated(0.06) benign(0.006) TCGA-K4-A5RJ-01 12 56532733 56532733 C T ESYT1 Missense_Mutation p.P853L 0.14 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 12 57348753 57348753 G T RDH16 Nonsense_Mutation p.S170* 0.14 TCGA-K4-A5RJ-01 12 57849515 57849515 C A INHBE Missense_Mutation p.P66T 0.21 tolerated(0.36) probably_damaging(0.934) TCGA-K4-A5RJ-01 12 58191715 58191715 G A AVIL Silent p.L804L 0.24 TCGA-K4-A5RJ-01 12 6076734 6076734 G A VWF Missense_Mutation p.T2602I 0.23 tolerated(0.06) benign(0.022) TCGA-K4-A5RJ-01 12 66696554 66696554 C T HELB Silent p.L57L 0.12 TCGA-K4-A5RJ-01 12 67072646 67072646 C T GRIP1 Silent p.L13L 0.15 TCGA-K4-A5RJ-01 12 6707582 6707582 G C CHD4 Missense_Mutation p.L498V 0.15 deleterious(0.01) benign(0.012) TCGA-K4-A5RJ-01 12 69753593 69753593 G A YEATS4 5'UTR 0.23 TCGA-K4-A5RJ-01 12 8051673 8051673 G A NANOGP1 RNA 0.33 TCGA-K4-A5RJ-01 12 81110975 81110975 G C MYF5 Missense_Mutation p.E45Q 0.29 tolerated(0.12) benign(0.09) TCGA-K4-A5RJ-01 12 86198947 86198947 C G RASSF9 Missense_Mutation p.D281H 0.11 deleterious(0.05) possibly_damaging(0.754) TCGA-K4-A5RJ-01 12 99007404 99007404 C T IKBIP Missense_Mutation p.D338N 0.09 tolerated(0.34) benign(0.017) TCGA-K4-A5RJ-01 13 113200085 113200085 G A TUBGCP3 Silent p.L421L 0.21 TCGA-K4-A5RJ-01 13 113487179 113487179 C T ATP11A Silent p.R467R 0.22 TCGA-K4-A5RJ-01 13 113893793 113893793 G A CUL4A Silent p.Q321Q 0.22 TCGA-K4-A5RJ-01 13 20635211 20635211 C G ZMYM2 Missense_Mutation p.L920V 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-K4-A5RJ-01 13 25444833 25444833 A C RNF17 Missense_Mutation p.N1468T 0.29 deleterious(0) probably_damaging(0.982) TCGA-K4-A5RJ-01 13 32676151 32676151 C G FRY Missense_Mutation p.Q108E 0.32 deleterious(0.01) possibly_damaging(0.667) TCGA-K4-A5RJ-01 13 49033934 49033934 G T RB1 Nonsense_Mutation p.E691* 0.24 TCGA-K4-A5RJ-01 13 52661552 52661552 C T NEK5 Silent p.Q438Q 0.27 TCGA-K4-A5RJ-01 13 58299356 58299356 G A PCDH17 Silent p.E1136E 0.21 TCGA-K4-A5RJ-01 13 77459733 77459733 C T KCTD12 Missense_Mutation p.R184H 0.36 tolerated(0.12) benign(0.411) TCGA-K4-A5RJ-01 13 95816712 95816712 G A ABCC4 Nonsense_Mutation p.Q699* 0.26 TCGA-K4-A5RJ-01 14 100118917 100118917 T A HHIPL1 Missense_Mutation p.D204E 0.31 deleterious(0) probably_damaging(0.968) TCGA-K4-A5RJ-01 14 102466402 102466402 G C DYNC1H1 Missense_Mutation p.R1294T 0.28 benign(0.221) TCGA-K4-A5RJ-01 14 105685522 105685522 C T BRF1 Missense_Mutation p.M475I 0.19 tolerated(0.14) benign(0.196) TCGA-K4-A5RJ-01 14 107199145 107199145 G A IGHV3-72 Silent p.F48F 0.18 TCGA-K4-A5RJ-01 14 36197607 36197607 C A RALGAPA1 Missense_Mutation p.R566L 0.27 deleterious(0) probably_damaging(0.997) TCGA-K4-A5RJ-01 14 36781210 36781210 C T MBIP Missense_Mutation p.D198N 0.25 deleterious(0.02) probably_damaging(1) TCGA-K4-A5RJ-01 14 52495523 52495523 G C NID2 Missense_Mutation p.S816C 0.24 deleterious(0) probably_damaging(0.954) TCGA-K4-A5RJ-01 14 52781833 52781833 C T PTGER2 Silent p.I189I 0.21 TCGA-K4-A5RJ-01 14 55625316 55625316 C A DLGAP5 Silent p.V599V 0.15 TCGA-K4-A5RJ-01 14 61115680 61115680 C T SIX1 Silent p.S76S 0.22 TCGA-K4-A5RJ-01 14 64653141 64653141 G A SYNE2 Splice_Site p.X5853_splice 0.22 TCGA-K4-A5RJ-01 14 67862286 67862286 C A PLEK2 Silent p.L74L 0.25 TCGA-K4-A5RJ-01 14 77926122 77926122 G A AHSA1 Missense_Mutation p.E82K 0.20 deleterious(0) probably_damaging(0.972) TCGA-K4-A5RJ-01 14 86088676 86088676 C A FLRT2 Nonsense_Mutation p.S273* 0.27 TCGA-K4-A5RJ-01 14 86089002 86089002 C T FLRT2 Nonsense_Mutation p.Q382* 0.21 TCGA-K4-A5RJ-01 14 94528812 94528812 C T DDX24 Missense_Mutation p.E292K 0.20 tolerated(0.74) benign(0.077) TCGA-K4-A5RJ-01 14 96953300 96953300 G A AK7 Silent p.L680L 0.27 TCGA-K4-A5RJ-01 15 23812076 23812076 G C MKRN3 Missense_Mutation p.E383Q 0.12 deleterious(0) possibly_damaging(0.769) TCGA-K4-A5RJ-01 15 25925426 25925426 G A ATP10A Silent p.F1236F 0.26 TCGA-K4-A5RJ-01 15 40457381 40457381 C G BUB1B Missense_Mutation p.L55V 0.24 tolerated(0.61) benign(0.032) TCGA-K4-A5RJ-01 15 42116052 42116052 G A MAPKBP1 Missense_Mutation p.E1342K 0.21 tolerated(0.29) benign(0.066) TCGA-K4-A5RJ-01 15 42127091 42127091 G C JMJD7 Missense_Mutation p.R73T 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-K4-A5RJ-01 15 42479543 42479543 C G VPS39 Missense_Mutation p.D154H 0.11 deleterious(0) probably_damaging(0.998) TCGA-K4-A5RJ-01 15 66793649 66793649 C T RPL4 Intron 0.13 TCGA-K4-A5RJ-01 15 69692415 69692415 C T PAQR5 Silent p.L238L 0.13 TCGA-K4-A5RJ-01 15 73615834 73615834 G A HCN4 Missense_Mutation p.A867V 0.17 deleterious_low_confidence(0.05) unknown(0) TCGA-K4-A5RJ-01 15 76632861 76632861 C T ISL2 Silent p.L252L 0.09 TCGA-K4-A5RJ-01 15 77907517 77907517 C T LINGO1 Silent p.L244L 0.26 TCGA-K4-A5RJ-01 15 80263081 80263081 C T BCL2A1 Missense_Mutation p.M127I 0.21 tolerated(0.61) benign(0.004) TCGA-K4-A5RJ-01 15 81636348 81636348 G A TMC3 Silent p.T519T 0.29 TCGA-K4-A5RJ-01 15 83222716 83222716 C G CPEB1 Missense_Mutation p.W295C 0.08 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 15 83349602 83349602 C T AP3B2 Missense_Mutation p.S253N 0.13 tolerated(0.43) benign(0.017) TCGA-K4-A5RJ-01 15 85382285 85382285 G A ALPK3 Missense_Mutation p.E329K 0.23 tolerated(0.05) benign(0.361) TCGA-K4-A5RJ-01 15 90768319 90768319 G C SEMA4B Silent p.L438L 0.22 TCGA-K4-A5RJ-01 16 1270963 1270963 C T CACNA1H Missense_Mutation p.A2344V 0.17 tolerated_low_confidence(0.42) unknown(0) TCGA-K4-A5RJ-01 16 48577140 48577140 T C N4BP1 Missense_Mutation p.N789S 0.29 tolerated(1) benign(0.001) TCGA-K4-A5RJ-01 16 50659487 50659487 G A NKD1 Missense_Mutation p.R153Q 0.35 deleterious(0) probably_damaging(0.965) TCGA-K4-A5RJ-01 16 66437031 66437031 G T CDH5 Nonsense_Mutation p.E772* 0.32 TCGA-K4-A5RJ-01 16 77396075 77396075 C G ADAMTS18 Missense_Mutation p.K381N 0.26 tolerated(0.1) possibly_damaging(0.67) TCGA-K4-A5RJ-01 16 777536 777536 C G HAGHL Silent p.L9L 0.28 TCGA-K4-A5RJ-01 16 81078057 81078057 G A ATMIN Missense_Mutation p.E652K 0.24 deleterious(0) probably_damaging(0.945) TCGA-K4-A5RJ-01 16 81348725 81348725 G A GAN Missense_Mutation p.E3K 0.38 tolerated_low_confidence(0.13) benign(0.001) TCGA-K4-A5RJ-01 16 90001483 90001483 C T TUBB3 Silent p.Y208Y 0.33 TCGA-K4-A5RJ-01 16 9923342 9923342 G A GRIN2A Silent p.L649L 0.33 TCGA-K4-A5RJ-01 17 1945090 1945090 C G DPH1 Missense_Mutation p.S424W 0.34 deleterious_low_confidence(0) possibly_damaging(0.532) TCGA-K4-A5RJ-01 17 21825483 21825483 T A FAM27L RNA 0.23 TCGA-K4-A5RJ-01 17 34091529 34091529 C G C17orf50 Silent p.L139L 0.18 TCGA-K4-A5RJ-01 17 35578656 35578656 A T ACACA Silent p.S1224S 0.19 TCGA-K4-A5RJ-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.20 deleterious(0) probably_damaging(0.994) TCGA-K4-A5RJ-01 17 37880997 37880997 G A ERBB2 Missense_Mutation p.G776S 0.19 tolerated(1) possibly_damaging(0.908) TCGA-K4-A5RJ-01 17 38612822 38612822 G A IGFBP4 Missense_Mutation p.S255N 0.26 deleterious(0.02) benign(0.276) TCGA-K4-A5RJ-01 17 40011358 40011358 G C KLHL11 Nonsense_Mutation p.S254* 0.22 TCGA-K4-A5RJ-01 17 40091573 40091573 C T TTC25 RNA 0.28 TCGA-K4-A5RJ-01 17 42327716 42327716 G A SLC4A1 3'UTR 0.21 TCGA-K4-A5RJ-01 17 42427072 42427072 G A GRN Missense_Mutation p.R101Q 0.26 tolerated(0.35) benign(0.037) TCGA-K4-A5RJ-01 17 43364157 43364157 G A MAP3K14 RNA 0.17 TCGA-K4-A5RJ-01 17 47121335 47121335 C G IGF2BP1 Missense_Mutation p.P403A 0.26 deleterious(0.04) benign(0.009) TCGA-K4-A5RJ-01 17 48470174 48470174 G C LRRC59 Missense_Mutation p.L84V 0.24 deleterious(0) probably_damaging(0.981) TCGA-K4-A5RJ-01 17 49279040 49279040 C G MBTD1 Missense_Mutation p.Q379H 0.17 tolerated(0.49) benign(0.078) TCGA-K4-A5RJ-01 17 60059810 60059810 G C MED13 Missense_Mutation p.S1185C 0.33 deleterious(0) benign(0.371) TCGA-K4-A5RJ-01 17 62504759 62504759 G T CEP95 Silent p.L23L 0.18 TCGA-K4-A5RJ-01 17 62892305 62892305 G C LRRC37A3 Missense_Mutation p.I357M 0.09 tolerated(0.11) benign(0.188) TCGA-K4-A5RJ-01 17 72588466 72588466 C T C17orf77 Missense_Mutation p.S94F 0.21 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-K4-A5RJ-01 17 74900494 74900494 C T MGAT5B Missense_Mutation p.P238L 0.50 tolerated(0.07) benign(0.359) TCGA-K4-A5RJ-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.29 TCGA-K4-A5RJ-01 17 78084745 78084745 G A GAA Missense_Mutation p.M519I 0.23 deleterious(0) probably_damaging(0.998) TCGA-K4-A5RJ-01 17 79204261 79204261 G C ENTHD2 Intron 0.24 TCGA-K4-A5RJ-01 17 79650079 79650079 G C ARL16 Missense_Mutation p.I90M 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-K4-A5RJ-01 17 79651104 79651104 G A HGS Missense_Mutation p.R3Q 0.44 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-K4-A5RJ-01 17 79801802 79801802 G A P4HB 3'UTR 0.27 TCGA-K4-A5RJ-01 17 80011222 80011222 G A GPS1 Missense_Mutation p.V76M 0.24 deleterious(0.01) possibly_damaging(0.763) TCGA-K4-A5RJ-01 17 80684473 80684473 C A FN3KRP Missense_Mutation p.L196M 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-K4-A5RJ-01 18 29598873 29598873 C T RNF125 Missense_Mutation p.S16F 0.26 deleterious(0.02) benign(0.259) TCGA-K4-A5RJ-01 18 31323532 31323532 T G ASXL3 Silent p.V1240V 0.32 TCGA-K4-A5RJ-01 18 3215035 3215035 G A MYOM1 Missense_Mutation p.R63W 0.09 deleterious_low_confidence(0.03) benign(0.2) TCGA-K4-A5RJ-01 18 33077851 33077851 C G INO80C 5'UTR 0.15 TCGA-K4-A5RJ-01 18 45368251 45368251 T C SMAD2 Missense_Mutation p.K451E 0.20 deleterious(0) possibly_damaging(0.68) TCGA-K4-A5RJ-01 19 10692044 10692044 G A AP1M2 Silent p.L191L 0.26 TCGA-K4-A5RJ-01 19 13395976 13395976 C T CACNA1A Missense_Mutation p.E1200K 0.30 possibly_damaging(0.486) TCGA-K4-A5RJ-01 19 16192846 16192846 G A TPM4 Missense_Mutation p.E122K 0.25 deleterious(0) possibly_damaging(0.896) TCGA-K4-A5RJ-01 19 23836456 23836456 C T ZNF675 Missense_Mutation p.E427K 0.31 tolerated(0.16) probably_damaging(0.995) TCGA-K4-A5RJ-01 19 31039239 31039239 C T ZNF536 Nonsense_Mutation p.Q905* 0.20 TCGA-K4-A5RJ-01 19 32873651 32873651 C G ZNF507 Missense_Mutation p.Q842E 0.42 tolerated(1) benign(0) TCGA-K4-A5RJ-01 19 34003543 34003543 C T PEPD Missense_Mutation p.E53K 0.20 deleterious(0.04) benign(0.015) TCGA-K4-A5RJ-01 19 36398362 36398362 C T TYROBP Missense_Mutation p.R72Q 0.05 deleterious(0.03) benign(0.089) TCGA-K4-A5RJ-01 19 37441737 37441737 A G ZNF568 Missense_Mutation p.N561S 0.36 tolerated(0.21) benign(0.422) TCGA-K4-A5RJ-01 19 39292382 39292382 G A LGALS4 3'UTR 0.21 TCGA-K4-A5RJ-01 19 4048019 4048019 G A ZBTB7A Missense_Mutation p.R496C 0.38 deleterious(0) possibly_damaging(0.556) TCGA-K4-A5RJ-01 19 41928202 41928202 C T BCKDHA Silent p.I260I 0.34 TCGA-K4-A5RJ-01 19 434831 434831 C T SHC2 Missense_Mutation p.E330K 0.35 deleterious(0.01) benign(0.281) TCGA-K4-A5RJ-01 19 44050102 44050102 C T XRCC1 Missense_Mutation p.E497K 0.13 tolerated(0.27) benign(0.011) TCGA-K4-A5RJ-01 19 45656253 45656253 G C NKPD1 Missense_Mutation p.S481C 0.68 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 19 45790773 45790773 G T MARK4 Nonsense_Mutation p.E449* 0.38 TCGA-K4-A5RJ-01 19 46057108 46057108 G C OPA3 Intron 0.50 TCGA-K4-A5RJ-01 19 4704166 4704166 C T DPP9 Missense_Mutation p.D193N 0.29 deleterious(0) possibly_damaging(0.713) TCGA-K4-A5RJ-01 19 48800195 48800195 G A CCDC114 3'UTR 0.26 TCGA-K4-A5RJ-01 19 48800208 48800208 G C CCDC114 3'UTR 0.22 TCGA-K4-A5RJ-01 19 49548466 49548466 C T CGB5 Missense_Mutation p.S138F 0.20 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-K4-A5RJ-01 19 50139032 50139032 G C RRAS Silent p.L177L 0.26 TCGA-K4-A5RJ-01 19 50847955 50847955 C G NAPSB RNA 0.25 TCGA-K4-A5RJ-01 19 51563858 51563858 G C KLK13 Missense_Mutation p.S24C 0.03 deleterious(0.01) benign(0.43) TCGA-K4-A5RJ-01 19 5691353 5691353 C T RPL36 Silent p.F39F 0.29 TCGA-K4-A5RJ-01 19 57888642 57888642 C G ZNF547 Missense_Mutation p.L100V 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-K4-A5RJ-01 1 104203096 104203096 G T AMY1A Missense_Mutation p.W331C 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-K4-A5RJ-01 1 109444500 109444500 C G GPSM2 Missense_Mutation p.Q296E 0.30 deleterious(0.02) possibly_damaging(0.625) TCGA-K4-A5RJ-01 1 109444551 109444551 C G GPSM2 Missense_Mutation p.Q313E 0.22 deleterious(0.02) benign(0.034) TCGA-K4-A5RJ-01 1 11150684 11150684 C T EXOSC10 Missense_Mutation p.E229K 0.33 deleterious(0) possibly_damaging(0.521) TCGA-K4-A5RJ-01 1 114970513 114970513 C G TRIM33 Missense_Mutation p.V387L 0.06 tolerated(0.73) benign(0.239) TCGA-K4-A5RJ-01 1 120906174 120906174 G - RP11-439A17.4 5'Flank 0.21 TCGA-K4-A5RJ-01 1 13001305 13001305 G C PRAMEF6 Silent p.L126L 0.21 TCGA-K4-A5RJ-01 1 14105966 14105966 C G PRDM2 Missense_Mutation p.S559C 0.09 probably_damaging(0.993) TCGA-K4-A5RJ-01 1 14107379 14107379 C G PRDM2 Missense_Mutation p.S1030C 0.10 unknown(0) TCGA-K4-A5RJ-01 1 144994687 144994687 C G PDE4DIP Silent p.L15L 0.10 TCGA-K4-A5RJ-01 1 149915774 149915774 G T OTUD7B Silent p.L838L 0.24 TCGA-K4-A5RJ-01 1 150955598 150955598 G A ANXA9 Missense_Mutation p.G6E 0.14 tolerated_low_confidence(0.18) benign(0.006) TCGA-K4-A5RJ-01 1 152278727 152278727 C G FLG Missense_Mutation p.E2879Q 0.07 benign(0.002) TCGA-K4-A5RJ-01 1 152325913 152325913 G C FLG2 Missense_Mutation p.A1450G 0.17 benign(0.119) TCGA-K4-A5RJ-01 1 154936330 154936330 G C SHC1 Missense_Mutation p.I568M 0.07 deleterious(0.03) benign(0.238) TCGA-K4-A5RJ-01 1 159161758 159161772 GTGGCTGGTGGCACC - CADM3 In_Frame_Del p.A76_V80del 0.31 TCGA-K4-A5RJ-01 1 159275951 159275951 G C FCER1A Missense_Mutation p.E169Q 0.13 tolerated(0.37) benign(0.037) TCGA-K4-A5RJ-01 1 1636344 1636344 C G CDK11A Missense_Mutation p.R486T 0.20 deleterious(0) unknown(0) TCGA-K4-A5RJ-01 1 169565230 169565230 G A SELP Silent p.L678L 0.41 TCGA-K4-A5RJ-01 1 169696928 169696928 C G SELE Missense_Mutation p.E474Q 0.09 tolerated(0.33) benign(0.05) TCGA-K4-A5RJ-01 1 17084519 17084519 C T MST1L RNA 0.07 TCGA-K4-A5RJ-01 1 176526020 176526020 C T PAPPA2 Nonsense_Mutation p.Q188* 0.28 TCGA-K4-A5RJ-01 1 181058384 181058384 G T IER5 Nonsense_Mutation p.E116* 0.48 TCGA-K4-A5RJ-01 1 183253052 183253052 C G NMNAT2 Intron 0.14 TCGA-K4-A5RJ-01 1 185956592 185956592 G A HMCN1 Silent p.Q988Q 0.15 TCGA-K4-A5RJ-01 1 203151890 203151890 C T CHI3L1 Missense_Mutation p.D186N 0.10 tolerated(0.05) possibly_damaging(0.615) TCGA-K4-A5RJ-01 1 203194828 203194828 G A CHIT1 Missense_Mutation p.L76F 0.33 tolerated(0.12) benign(0.111) TCGA-K4-A5RJ-01 1 204106292 204106292 C T ETNK2 Silent p.G318G 0.23 TCGA-K4-A5RJ-01 1 222721221 222721221 G C HHIPL2 Missense_Mutation p.L56V 0.38 tolerated(0.56) benign(0.006) TCGA-K4-A5RJ-01 1 224927028 224927028 C T CNIH3 Intron 0.15 TCGA-K4-A5RJ-01 1 232626797 232626797 C T SIPA1L2 Silent p.L543L 0.09 TCGA-K4-A5RJ-01 1 235292074 235292074 G A TOMM20 5'UTR 0.23 TCGA-K4-A5RJ-01 1 237993920 237993920 G A RYR2 Missense_Mutation p.A4916T 0.35 possibly_damaging(0.811) TCGA-K4-A5RJ-01 1 248756644 248756644 G C OR2T10 Silent p.L142L 0.21 TCGA-K4-A5RJ-01 1 28858778 28858778 G C RCC1 Missense_Mutation p.E150D 0.14 tolerated(0.34) benign(0.003) TCGA-K4-A5RJ-01 1 28858803 28858803 G T RCC1 Missense_Mutation p.D159Y 0.16 deleterious(0) probably_damaging(0.972) TCGA-K4-A5RJ-01 1 36202544 36202544 C T CLSPN Missense_Mutation p.E1294K 0.28 tolerated(0.06) benign(0.203) TCGA-K4-A5RJ-01 1 38167463 38167463 C T CDCA8 Missense_Mutation p.S154F 0.15 deleterious(0.01) possibly_damaging(0.664) TCGA-K4-A5RJ-01 1 43902925 43902925 G T SZT2 Missense_Mutation p.V1983F 0.19 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 1 46120253 46120253 C T GPBP1L1 Missense_Mutation p.D147N 0.18 tolerated(0.05) possibly_damaging(0.56) TCGA-K4-A5RJ-01 1 54670818 54670818 C T MRPL37 Silent p.I158I 0.22 TCGA-K4-A5RJ-01 1 86952298 86952298 A G CLCA1 Silent p.T348T 0.32 TCGA-K4-A5RJ-01 20 2446385 2446385 G C SNRPB Nonsense_Mutation p.S79* 0.16 TCGA-K4-A5RJ-01 20 32666323 32666323 G C RALY Missense_Mutation p.D297H 0.17 tolerated_low_confidence(0.08) probably_damaging(0.914) TCGA-K4-A5RJ-01 20 3324344 3324344 G A C20orf194 Missense_Mutation p.S275F 0.22 deleterious(0) possibly_damaging(0.767) TCGA-K4-A5RJ-01 20 35243766 35243766 G T SLA2 Missense_Mutation p.L132M 0.16 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 20 35717441 35717441 C A RBL1 Nonsense_Mutation p.E81* 0.18 TCGA-K4-A5RJ-01 20 35929752 35929752 G C MANBAL Missense_Mutation p.G29A 0.12 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 20 39832452 39832452 C T ZHX3 Missense_Mutation p.E369K 0.16 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 20 44424004 44424004 G C DNTTIP1 Silent p.L98L 0.21 TCGA-K4-A5RJ-01 20 44506197 44506197 G A ZSWIM3 Missense_Mutation p.A334T 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A5RJ-01 20 50406908 50406908 G A SALL4 Missense_Mutation p.S705F 0.23 deleterious(0) possibly_damaging(0.467) TCGA-K4-A5RJ-01 20 60913630 60913630 G A LAMA5 Silent p.N504N 0.32 TCGA-K4-A5RJ-01 20 61511899 61511899 C G DIDO1 Missense_Mutation p.Q1803H 0.28 possibly_damaging(0.885) TCGA-K4-A5RJ-01 20 62571530 62571530 C T UCKL1 Missense_Mutation p.D514N 0.19 tolerated(0.08) benign(0.008) TCGA-K4-A5RJ-01 20 826431 826431 G A FAM110A 3'UTR 0.33 TCGA-K4-A5RJ-01 21 35821850 35821850 G A KCNE1 Missense_Mutation p.S28L 0.22 deleterious(0.01) possibly_damaging(0.625) TCGA-K4-A5RJ-01 22 20100531 20100531 C A TRMT2A Splice_Site p.X517_splice 0.30 TCGA-K4-A5RJ-01 22 30887642 30887642 C T SEC14L4 Missense_Mutation p.M333I 0.29 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 22 39448718 39448718 C A APOBEC3F 3'UTR 0.27 TCGA-K4-A5RJ-01 2 100906764 100906764 C G LONRF2 Missense_Mutation p.D626H 0.20 deleterious(0) probably_damaging(0.99) TCGA-K4-A5RJ-01 2 109086800 109086800 G C GCC2 Missense_Mutation p.D339H 0.19 tolerated(0.27) possibly_damaging(0.596) TCGA-K4-A5RJ-01 2 109389434 109389434 G C RANBP2 Missense_Mutation p.D2742H 0.07 deleterious(0) possibly_damaging(0.9) TCGA-K4-A5RJ-01 2 113890401 113890401 G C IL1RN Missense_Mutation p.D166H 0.22 deleterious(0.03) possibly_damaging(0.535) TCGA-K4-A5RJ-01 2 122363391 122363391 C A CLASP1 Silent p.L27L 0.20 TCGA-K4-A5RJ-01 2 122513376 122513376 C T TSN Silent p.F7F 0.11 TCGA-K4-A5RJ-01 2 130914882 130914882 C G SMPD4 Missense_Mutation p.E386Q 0.33 tolerated(0.2) benign(0.023) TCGA-K4-A5RJ-01 2 136594449 136594449 G A LCT Silent p.L97L 0.18 TCGA-K4-A5RJ-01 2 136627897 136627897 A G MCM6 Missense_Mutation p.F97L 0.25 tolerated(0.45) benign(0.018) TCGA-K4-A5RJ-01 2 141108408 141108408 C G LRP1B Missense_Mutation p.R3950S 0.13 benign(0.227) TCGA-K4-A5RJ-01 2 153475460 153475460 T G FMNL2 Missense_Mutation p.I472S 0.12 benign(0.257) TCGA-K4-A5RJ-01 2 163236456 163236456 T A KCNH7 Missense_Mutation p.Q1013L 0.25 tolerated(0.35) benign(0.001) TCGA-K4-A5RJ-01 2 165953881 165953881 C G SCN3A Missense_Mutation p.D1374H 0.12 tolerated(0.11) benign(0.172) TCGA-K4-A5RJ-01 2 166737281 166737281 C G TTC21B Missense_Mutation p.G1238A 0.28 deleterious(0) probably_damaging(0.968) TCGA-K4-A5RJ-01 2 170463626 170463626 G A PPIG Missense_Mutation p.G86E 0.17 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 2 179501196 179501196 G A TTN Missense_Mutation p.A13753V 0.21 TCGA-K4-A5RJ-01 2 190428666 190428666 G A SLC40A1 Missense_Mutation p.S349L 0.14 deleterious(0) possibly_damaging(0.906) TCGA-K4-A5RJ-01 2 197636610 197636610 G C GTF3C3 Missense_Mutation p.Q708E 0.18 deleterious(0.02) possibly_damaging(0.872) TCGA-K4-A5RJ-01 2 215852479 215852479 G A ABCA12 Missense_Mutation p.L1290F 0.29 deleterious(0.03) probably_damaging(0.987) TCGA-K4-A5RJ-01 2 216236839 216236839 C T FN1 Silent p.P2169P 0.33 TCGA-K4-A5RJ-01 2 219878068 219878068 C T CCDC108 Silent p.V1290V 0.15 TCGA-K4-A5RJ-01 2 231371044 231371044 G A SP100 Missense_Mutation p.E633K 0.34 tolerated(0.16) probably_damaging(0.916) TCGA-K4-A5RJ-01 2 237415965 237415965 C G IQCA1 5'UTR 0.23 TCGA-K4-A5RJ-01 2 24521601 24521601 C G ITSN2 Missense_Mutation p.R476T 0.24 deleterious(0.02) unknown(0) TCGA-K4-A5RJ-01 2 27324700 27324700 G A CGREF1 Silent p.L133L 0.27 TCGA-K4-A5RJ-01 2 27607584 27607584 C T PPM1G Missense_Mutation p.E261K 0.26 deleterious(0.02) benign(0.292) TCGA-K4-A5RJ-01 2 27607698 27607698 C A PPM1G Nonsense_Mutation p.E223* 0.30 TCGA-K4-A5RJ-01 2 27607710 27607710 C T PPM1G Missense_Mutation p.E219K 0.32 tolerated(0.29) benign(0.002) TCGA-K4-A5RJ-01 2 31805815 31805815 G T SRD5A2 RNA 0.20 TCGA-K4-A5RJ-01 2 7164640 7164640 C T RNF144A Missense_Mutation p.S217F 0.22 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 2 73679943 73679943 C T ALMS1 Missense_Mutation p.H2096Y 0.13 benign(0.051) TCGA-K4-A5RJ-01 2 74174011 74174011 G C DGUOK Missense_Mutation p.E141Q 0.13 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 2 74755973 74755973 C G AUP1 Missense_Mutation p.K143N 0.28 deleterious(0) probably_damaging(0.933) TCGA-K4-A5RJ-01 2 86406665 86406665 C T IMMT Nonsense_Mutation p.W67* 0.22 TCGA-K4-A5RJ-01 2 8822189 8822189 C G ID2 5'UTR 0.20 TCGA-K4-A5RJ-01 2 88482315 88482315 C T THNSL2 Silent p.F300F 0.36 TCGA-K4-A5RJ-01 2 95818969 95818969 G A ZNF514 Silent p.F10F 0.32 TCGA-K4-A5RJ-01 2 97909626 97909626 G C ANKRD36 Missense_Mutation p.E1477Q 0.29 tolerated(0.45) benign(0.244) TCGA-K4-A5RJ-01 2 98340694 98340694 C G ZAP70 Silent p.L65L 0.16 TCGA-K4-A5RJ-01 3 101311529 101311529 G A PCNP Missense_Mutation p.D157N 0.19 deleterious(0.03) probably_damaging(0.983) TCGA-K4-A5RJ-01 3 101476879 101476879 G T CEP97 Nonsense_Mutation p.E477* 0.20 TCGA-K4-A5RJ-01 3 105404267 105404267 C T CBLB Missense_Mutation p.D700N 0.23 tolerated_low_confidence(0.36) benign(0.001) TCGA-K4-A5RJ-01 3 113513806 113513806 G C ATP6V1A Missense_Mutation p.R359T 0.19 deleterious(0.05) probably_damaging(1) TCGA-K4-A5RJ-01 3 113634565 113634565 G C GRAMD1C Missense_Mutation p.D324H 0.12 deleterious(0) probably_damaging(0.998) TCGA-K4-A5RJ-01 3 120115752 120115752 G T FSTL1 3'UTR 0.24 TCGA-K4-A5RJ-01 3 122274845 122274845 G C PARP9 Missense_Mutation p.S93C 0.31 tolerated(0.07) benign(0.046) TCGA-K4-A5RJ-01 3 124592374 124592374 G C ITGB5 Silent p.L25L 0.09 TCGA-K4-A5RJ-01 3 12950881 12950881 C G IQSEC1 Missense_Mutation p.V838L 0.23 tolerated(0.09) benign(0.064) TCGA-K4-A5RJ-01 3 139085500 139085500 G A COPB2 Silent p.V598V 0.31 TCGA-K4-A5RJ-01 3 148614377 148614377 C T CPA3 Silent p.L379L 0.24 TCGA-K4-A5RJ-01 3 151163831 151163831 G C IGSF10 Nonsense_Mutation p.S1313* 0.08 TCGA-K4-A5RJ-01 3 158366879 158366879 G C GFM1 Missense_Mutation p.E208Q 0.21 deleterious(0.01) possibly_damaging(0.903) TCGA-K4-A5RJ-01 3 167728025 167728025 T C GOLIM4 3'UTR 0.32 TCGA-K4-A5RJ-01 3 179095136 179095136 C T MFN1 Missense_Mutation p.S410L 0.32 deleterious(0) possibly_damaging(0.721) TCGA-K4-A5RJ-01 3 183756605 183756605 G A HTR3D Missense_Mutation p.E403K 0.17 tolerated(0.22) benign(0.261) TCGA-K4-A5RJ-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.18 deleterious_low_confidence(0.02) benign(0.001) TCGA-K4-A5RJ-01 3 185985523 185985523 T C DGKG Missense_Mutation p.E387G 0.12 tolerated(0.15) benign(0.23) TCGA-K4-A5RJ-01 3 195027995 195027995 C G ACAP2 Missense_Mutation p.D323H 0.22 tolerated(0.11) probably_damaging(0.946) TCGA-K4-A5RJ-01 3 196541335 196541335 G C PAK2 Missense_Mutation p.D317H 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-K4-A5RJ-01 3 27215956 27215956 G T NEK10 Nonsense_Mutation p.S917* 0.20 TCGA-K4-A5RJ-01 3 33414761 33414761 T C FBXL2 Silent p.Y123Y 0.26 TCGA-K4-A5RJ-01 3 33704998 33704998 C G CLASP2 Missense_Mutation p.M218I 0.26 tolerated(0.09) benign(0.012) TCGA-K4-A5RJ-01 3 39229444 39229444 G C XIRP1 Missense_Mutation p.S498C 0.28 deleterious(0) probably_damaging(0.98) TCGA-K4-A5RJ-01 3 56655683 56655683 C G CCDC66 3'UTR 0.30 TCGA-K4-A5RJ-01 3 57108230 57108230 G C SPATA12 Missense_Mutation p.E170Q 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.859) TCGA-K4-A5RJ-01 3 57545487 57545487 G A PDE12 Missense_Mutation p.R529K 0.09 tolerated(0.51) benign(0.036) TCGA-K4-A5RJ-01 3 57545618 57545618 G C PDE12 Missense_Mutation p.E573Q 0.15 tolerated(0.11) possibly_damaging(0.474) TCGA-K4-A5RJ-01 3 58484459 58484459 C T KCTD6 5'UTR 0.33 TCGA-K4-A5RJ-01 3 64008135 64008135 G C PSMD6 Silent p.L70L 0.29 TCGA-K4-A5RJ-01 3 77147176 77147176 C A ROBO2 Missense_Mutation p.R41S 0.13 deleterious(0.05) unknown(0) TCGA-K4-A5RJ-01 3 8667330 8667330 C T SSUH2 Silent p.K257K 0.30 TCGA-K4-A5RJ-01 3 89259646 89259646 G A EPHA3 Missense_Mutation p.E264K 0.10 deleterious(0.01) benign(0.254) TCGA-K4-A5RJ-01 3 98110271 98110271 C G OR5K3 Silent p.L254L 0.20 TCGA-K4-A5RJ-01 3 98304436 98304436 C T CPOX Missense_Mutation p.D341N 0.31 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 3 98538242 98538242 C T DCBLD2 Silent p.G297G 0.30 TCGA-K4-A5RJ-01 4 109669168 109669168 C T ETNPPL Missense_Mutation p.D359N 0.25 tolerated(0.05) benign(0.434) TCGA-K4-A5RJ-01 4 119204178 119204178 G T PRSS12 Missense_Mutation p.Q710K 0.25 deleterious(0.04) benign(0.062) TCGA-K4-A5RJ-01 4 124177206 124177206 C G SPATA5 Missense_Mutation p.I792M 0.31 deleterious(0.03) possibly_damaging(0.864) TCGA-K4-A5RJ-01 4 125590322 125590322 C G ANKRD50 Missense_Mutation p.Q1370H 0.30 tolerated_low_confidence(0.06) probably_damaging(0.949) TCGA-K4-A5RJ-01 4 3254957 3254957 G C MSANTD1 Missense_Mutation p.S115T 0.17 tolerated(0.33) probably_damaging(0.93) TCGA-K4-A5RJ-01 4 38777853 38777853 G A TLR10 5'UTR 0.26 TCGA-K4-A5RJ-01 4 69798423 69798423 G A UGT2A3 Silent p.L307L 0.12 TCGA-K4-A5RJ-01 4 74442386 74442386 C T RASSF6 Missense_Mutation p.E294K 0.10 tolerated(0.4) benign(0.013) TCGA-K4-A5RJ-01 4 8307722 8307722 C G HTRA3 Missense_Mutation p.I407M 0.25 deleterious(0) possibly_damaging(0.863) TCGA-K4-A5RJ-01 4 8588977 8588977 C G GPR78 Missense_Mutation p.L327V 0.07 deleterious_low_confidence(0.02) benign(0.038) TCGA-K4-A5RJ-01 4 86989066 86989066 G A MAPK10 Missense_Mutation p.P282L 0.09 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 5 101748788 101748788 G A SLCO6A1 Missense_Mutation p.S511L 0.17 deleterious(0.04) possibly_damaging(0.904) TCGA-K4-A5RJ-01 5 1065569 1065569 C T SLC12A7 Missense_Mutation p.E756K 0.25 deleterious(0.01) possibly_damaging(0.468) TCGA-K4-A5RJ-01 5 109025996 109025996 C T MAN2A1 5'UTR 0.36 TCGA-K4-A5RJ-01 5 115813848 115813848 C T SEMA6A Missense_Mutation p.C477Y 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A5RJ-01 5 132198029 132198029 C T GDF9 Missense_Mutation p.G206E 0.27 tolerated(0.15) benign(0.001) TCGA-K4-A5RJ-01 5 137426381 137426381 G A WNT8A Silent p.L225L 0.24 TCGA-K4-A5RJ-01 5 138160433 138160433 C T CTNNA1 Missense_Mutation p.S268L 0.23 tolerated(0.29) benign(0.003) TCGA-K4-A5RJ-01 5 140175541 140175541 C G PCDHA2 Nonsense_Mutation p.S331* 0.25 TCGA-K4-A5RJ-01 5 140752335 140752335 G T PCDHGB3 Missense_Mutation p.D792Y 0.09 deleterious(0.01) benign(0.257) TCGA-K4-A5RJ-01 5 140868825 140868825 C G PCDHGC5 Silent p.L6L 0.18 TCGA-K4-A5RJ-01 5 14508300 14508300 G C TRIO Missense_Mutation p.Q3021H 0.27 unknown(0) TCGA-K4-A5RJ-01 5 169028281 169028281 C G SPDL1 Intron 0.13 TCGA-K4-A5RJ-01 5 169028503 169028503 C G SPDL1 Missense_Mutation p.S515C 0.20 deleterious(0.04) benign(0.072) TCGA-K4-A5RJ-01 5 170814917 170814917 C T NPM1 5'UTR 0.19 TCGA-K4-A5RJ-01 5 176830876 176830876 G A F12 Missense_Mutation p.H412Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-K4-A5RJ-01 5 178416073 178416073 T A GRM6 Missense_Mutation p.D406V 0.19 deleterious(0) probably_damaging(0.993) TCGA-K4-A5RJ-01 5 179044817 179044817 C T HNRNPH1 Missense_Mutation p.E302K 0.27 tolerated(0.09) benign(0.089) TCGA-K4-A5RJ-01 5 442650 442650 G C C5orf55 Silent p.L96L 0.20 TCGA-K4-A5RJ-01 5 50117168 50117168 C T PARP8 Missense_Mutation p.P597L 0.24 deleterious(0) probably_damaging(0.996) TCGA-K4-A5RJ-01 5 66386052 66386052 G T MAST4 Missense_Mutation p.A276S 0.16 possibly_damaging(0.62) TCGA-K4-A5RJ-01 5 68467267 68467267 G A CCNB1 Silent p.L178L 0.12 TCGA-K4-A5RJ-01 5 819658 819658 G A ZDHHC11 Silent p.D376D 0.20 TCGA-K4-A5RJ-01 5 83402466 83402466 C T EDIL3 Splice_Site p.X217_splice 0.22 TCGA-K4-A5RJ-01 5 94850621 94850621 G T TTC37 Missense_Mutation p.H881N 0.30 tolerated(0.05) probably_damaging(1) TCGA-K4-A5RJ-01 6 10586313 10586313 A T GCNT2 Intron 0.20 TCGA-K4-A5RJ-01 6 107113690 107113690 C G QRSL1 Nonsense_Mutation p.S467* 0.25 TCGA-K4-A5RJ-01 6 111587987 111587987 G C KIAA1919 Missense_Mutation p.A408P 0.18 deleterious(0) probably_damaging(0.993) TCGA-K4-A5RJ-01 6 117150187 117150187 C T GPRC6A 5'UTR 0.25 TCGA-K4-A5RJ-01 6 129621956 129621956 G C LAMA2 Missense_Mutation p.G1038A 0.25 deleterious(0.01) probably_damaging(1) TCGA-K4-A5RJ-01 6 134495197 134495197 C T SGK1 Silent p.L153L 0.18 TCGA-K4-A5RJ-01 6 135749848 135749848 G C AHI1 Missense_Mutation p.H848D 0.16 deleterious(0.01) possibly_damaging(0.791) TCGA-K4-A5RJ-01 6 150004901 150004901 G T LATS1 Missense_Mutation p.Q442K 0.22 tolerated_low_confidence(0.76) benign(0.243) TCGA-K4-A5RJ-01 6 150005575 150005575 C T LATS1 Missense_Mutation p.G217E 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-K4-A5RJ-01 6 152576147 152576147 C G SYNE1 Missense_Mutation p.E6446D 0.33 possibly_damaging(0.582) TCGA-K4-A5RJ-01 6 160176086 160176086 G C WTAP Missense_Mutation p.D212H 0.24 deleterious(0) probably_damaging(0.959) TCGA-K4-A5RJ-01 6 161085240 161085240 G A LPA Missense_Mutation p.H3Y 0.20 tolerated_low_confidence(0.13) benign(0.134) TCGA-K4-A5RJ-01 6 170844307 170844307 A G PSMB1 3'UTR 0.20 TCGA-K4-A5RJ-01 6 26235027 26235027 G A HIST1H1D Silent p.I45I 0.17 TCGA-K4-A5RJ-01 6 28253373 28253373 G C PGBD1 Missense_Mutation p.E148Q 0.22 tolerated_low_confidence(0.09) benign(0.008) TCGA-K4-A5RJ-01 6 28875040 28875040 C T TRIM27 Splice_Site p.X307_splice 0.30 TCGA-K4-A5RJ-01 6 29274998 29274998 G C OR14J1 Missense_Mutation p.D178H 0.15 deleterious(0) probably_damaging(0.997) TCGA-K4-A5RJ-01 6 29323909 29323909 C A OR5V1 Nonsense_Mutation p.E22* 0.26 TCGA-K4-A5RJ-01 6 30457327 30457327 C T HLA-E Missense_Mutation p.L7F 0.22 tolerated_low_confidence(0.18) possibly_damaging(0.587) TCGA-K4-A5RJ-01 6 3154052 3154052 G A TUBB2A 3'UTR 0.12 TCGA-K4-A5RJ-01 6 31600575 31600575 G C PRRC2A Missense_Mutation p.Q1375H 0.18 unknown(0) TCGA-K4-A5RJ-01 6 31601166 31601166 G C PRRC2A Missense_Mutation p.E1444Q 0.17 unknown(0) TCGA-K4-A5RJ-01 6 33179769 33179769 G T RING1 Missense_Mutation p.G370V 0.41 deleterious(0) unknown(0) TCGA-K4-A5RJ-01 6 35803104 35803104 G A SRPK1 Missense_Mutation p.R649W 0.19 deleterious(0.04) probably_damaging(0.989) TCGA-K4-A5RJ-01 6 35944978 35944978 C T SLC26A8 Intron 0.18 TCGA-K4-A5RJ-01 6 38957805 38957805 G A DNAH8 Silent p.K4140K 0.24 TCGA-K4-A5RJ-01 6 39290252 39290252 A G KCNK16 Missense_Mutation p.V22A 0.20 deleterious(0.05) benign(0.341) TCGA-K4-A5RJ-01 6 41304008 41304008 C G NCR2 Missense_Mutation p.S79C 0.19 deleterious(0.01) possibly_damaging(0.844) TCGA-K4-A5RJ-01 6 41654866 41654866 C G TFEB Missense_Mutation p.E257Q 0.31 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 6 43019388 43019388 C T CUL7 Missense_Mutation p.E316K 0.20 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 6 43491375 43491375 C G XPO5 3'UTR 0.18 TCGA-K4-A5RJ-01 6 44310929 44310929 G C SPATS1 Missense_Mutation p.E33Q 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.656) TCGA-K4-A5RJ-01 6 46801002 46801002 G A MEP1A Missense_Mutation p.E446K 0.21 tolerated(0.38) possibly_damaging(0.515) TCGA-K4-A5RJ-01 6 47254304 47254304 G T TNFRSF21 Missense_Mutation p.Q42K 0.21 deleterious(0.02) benign(0.054) TCGA-K4-A5RJ-01 6 52319027 52319027 T G EFHC1 Missense_Mutation p.D286E 0.25 tolerated(0.05) possibly_damaging(0.859) TCGA-K4-A5RJ-01 6 56399958 56399958 C G DST Missense_Mutation p.E3012Q 0.23 probably_damaging(0.999) TCGA-K4-A5RJ-01 6 56496744 56496744 C T DST Silent p.Q763Q 0.26 TCGA-K4-A5RJ-01 6 83775419 83775419 C T UBE3D Missense_Mutation p.E7K 0.27 tolerated(0.42) benign(0.004) TCGA-K4-A5RJ-01 6 86253353 86253353 C G SNX14 Missense_Mutation p.D412H 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A5RJ-01 6 90573672 90573672 G T CASP8AP2 RNA 0.30 TCGA-K4-A5RJ-01 7 102825887 102825887 C G DPY19L2P2 Intron 0.23 TCGA-K4-A5RJ-01 7 111379200 111379200 T A DOCK4 Missense_Mutation p.E1732V 0.29 deleterious(0.01) benign(0.211) TCGA-K4-A5RJ-01 7 120385864 120385864 G A KCND2 Missense_Mutation p.E500K 0.11 tolerated_low_confidence(0.26) benign(0.309) TCGA-K4-A5RJ-01 7 128371228 128371228 C T FAM71F1 3'UTR 0.25 TCGA-K4-A5RJ-01 7 128585950 128585950 C G IRF5 Missense_Mutation p.P83A 0.27 deleterious(0) probably_damaging(0.999) TCGA-K4-A5RJ-01 7 134617874 134617874 G A CALD1 Silent p.Q118Q 0.20 TCGA-K4-A5RJ-01 7 139824427 139824427 G A KDM7A Missense_Mutation p.P349S 0.20 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 7 143826677 143826677 C A OR2A14 Missense_Mutation p.P158T 0.21 deleterious(0) benign(0.003) TCGA-K4-A5RJ-01 7 148080738 148080738 T C CNTNAP2 Intron 0.31 TCGA-K4-A5RJ-01 7 148801741 148801741 G A ZNF425 Missense_Mutation p.H408Y 0.26 deleterious(0) probably_damaging(1) TCGA-K4-A5RJ-01 7 148801973 148801973 G C ZNF425 Missense_Mutation p.F330L 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-K4-A5RJ-01 7 148802180 148802180 G A ZNF425 Silent p.L261L 0.24 TCGA-K4-A5RJ-01 7 148802381 148802381 G T ZNF425 Silent p.V194V 0.21 TCGA-K4-A5RJ-01 7 148802642 148802642 G A ZNF425 Silent p.P107P 0.23 TCGA-K4-A5RJ-01 7 148978639 148978639 G C ZNF783 Missense_Mutation p.E282D 0.20 tolerated(0.07) benign(0.01) TCGA-K4-A5RJ-01 7 150642488 150642488 G A KCNH2 Missense_Mutation p.P1149S 0.21 tolerated_low_confidence(0.35) probably_damaging(0.968) TCGA-K4-A5RJ-01 7 151945062 151945062 G A KMT2C Silent p.V819V 0.06 TCGA-K4-A5RJ-01 7 154863041 154863041 G A HTR5A Silent p.T144T 0.24 TCGA-K4-A5RJ-01 7 22534480 22534480 C G STEAP1B 5'UTR 0.13 TCGA-K4-A5RJ-01 7 36396945 36396945 G A KIAA0895 Missense_Mutation p.R145C 0.17 deleterious_low_confidence(0.04) benign(0.006) TCGA-K4-A5RJ-01 7 48312163 48312163 C G ABCA13 Nonsense_Mutation p.S967* 0.27 TCGA-K4-A5RJ-01 7 5633179 5633179 G A FSCN1 Silent p.A204A 0.21 TCGA-K4-A5RJ-01 7 64363779 64363779 C T ZNF273 Silent p.L28L 0.19 TCGA-K4-A5RJ-01 7 66262459 66262459 G A KCTD7 Missense_Mutation p.E232K 0.31 deleterious(0) benign(0.344) TCGA-K4-A5RJ-01 7 66767719 66767719 C T Y_RNA 5'Flank 0.18 TCGA-K4-A5RJ-01 7 66767828 66767828 C T STAG3L4 RNA 0.20 TCGA-K4-A5RJ-01 7 73245564 73245564 C T CLDN4 Silent p.I11I 0.17 TCGA-K4-A5RJ-01 7 75046064 75046064 C G POM121C 3'Flank 0.24 TCGA-K4-A5RJ-01 7 82997133 82997133 C G SEMA3E Missense_Mutation p.Q699H 0.20 tolerated(0.23) benign(0.001) TCGA-K4-A5RJ-01 7 91502967 91502967 G T MTERF Missense_Mutation p.L381I 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-K4-A5RJ-01 7 96746940 96746940 C T ACN9 5'UTR 0.31 TCGA-K4-A5RJ-01 8 120651012 120651012 C T ENPP2 Silent p.R3R 0.33 TCGA-K4-A5RJ-01 8 120814144 120814144 C T TAF2 Missense_Mutation p.D228N 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-K4-A5RJ-01 8 143556841 143556841 G A BAI1 Nonsense_Mutation p.W264* 0.43 TCGA-K4-A5RJ-01 8 2048795 2048795 G T MYOM2 Missense_Mutation p.G857V 0.29 tolerated(0.12) benign(0.428) TCGA-K4-A5RJ-01 8 22888354 22888354 G A TNFRSF10B Silent p.C94C 0.33 TCGA-K4-A5RJ-01 8 27321246 27321246 G C CHRNA2 Silent p.G238G 0.37 TCGA-K4-A5RJ-01 8 51314787 51314787 T A SNTG1 Nonsense_Mutation p.C15* 0.25 TCGA-K4-A5RJ-01 8 54163623 54163623 G A OPRK1 5'UTR 0.16 TCGA-K4-A5RJ-01 8 59410875 59410875 G A CYP7A1 Silent p.F78F 0.24 TCGA-K4-A5RJ-01 8 66753681 66753681 G A PDE7A Silent p.L21L 0.18 TCGA-K4-A5RJ-01 8 70980527 70980527 G A PRDM14 Nonsense_Mutation p.Q284* 0.26 TCGA-K4-A5RJ-01 8 73921293 73921293 G A TERF1 Missense_Mutation p.E58K 0.25 tolerated(0.2) benign(0.321) TCGA-K4-A5RJ-01 9 100890922 100890922 G A CORO2A Silent p.L349L 0.24 TCGA-K4-A5RJ-01 9 116094269 116094269 G A WDR31 Missense_Mutation p.P12S 0.27 tolerated_low_confidence(0.33) benign(0.002) TCGA-K4-A5RJ-01 9 116858328 116858328 C T KIF12 Intron 0.23 TCGA-K4-A5RJ-01 9 117810729 117810729 A G TNC Silent p.N1554N 0.27 TCGA-K4-A5RJ-01 9 121929440 121929440 G A BRINP1 Silent p.I736I 0.25 TCGA-K4-A5RJ-01 9 128086118 128086118 G C GAPVD1 Missense_Mutation p.E592Q 0.24 tolerated(0.06) probably_damaging(0.997) TCGA-K4-A5RJ-01 9 130581079 130581079 G C ENG Silent p.L448L 0.20 TCGA-K4-A5RJ-01 9 13223598 13223598 C G MPDZ Missense_Mutation p.E169Q 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-K4-A5RJ-01 9 33447557 33447557 G T AQP3 5'UTR 0.33 TCGA-K4-A5RJ-01 9 34397520 34397520 C G C9orf24 Missense_Mutation p.E38Q 0.24 deleterious(0.03) probably_damaging(0.969) TCGA-K4-A5RJ-01 9 37592509 37592509 G C TOMM5 Silent p.L7L 0.17 TCGA-K4-A5RJ-01 9 5988383 5988383 C G KIAA2026 Missense_Mutation p.L252F 0.13 deleterious(0) possibly_damaging(0.905) TCGA-K4-A5RJ-01 9 5988539 5988539 C G KIAA2026 Missense_Mutation p.L200F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A5RJ-01 9 6595073 6595073 G T GLDC Missense_Mutation p.S401Y 0.29 deleterious(0) possibly_damaging(0.748) TCGA-K4-A5RJ-01 9 72962874 72962874 G C SMC5 Missense_Mutation p.E937Q 0.15 deleterious(0.02) possibly_damaging(0.641) TCGA-K4-A5RJ-01 9 77400853 77400853 C T TRPM6 Silent p.R952R 0.19 TCGA-K4-A5RJ-01 9 84531580 84531580 C T SPATA31D5P RNA 0.31 TCGA-K4-A5RJ-01 9 84606453 84606453 C T SPATA31D1 Silent p.F356F 0.24 TCGA-K4-A5RJ-01 9 86368206 86368206 G C GKAP1 Missense_Mutation p.I269M 0.18 deleterious(0) probably_damaging(0.92) TCGA-K4-A5RJ-01 X 103431234 103431234 C G FAM199X Missense_Mutation p.Q221E 0.48 tolerated(0.17) probably_damaging(0.954) TCGA-K4-A5RJ-01 X 108718743 108718743 G C GUCY2F Missense_Mutation p.S141R 0.53 tolerated(0.44) possibly_damaging(0.591) TCGA-K4-A5RJ-01 X 130419064 130419064 G A IGSF1 Intron 0.42 TCGA-K4-A5RJ-01 X 138668584 138668584 A T MCF2 Missense_Mutation p.V938E 0.34 tolerated(0.96) benign(0.005) TCGA-K4-A5RJ-01 X 140994869 140994869 C G MAGEC1 Missense_Mutation p.S560C 0.20 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-K4-A5RJ-01 X 150793933 150793933 C T PASD1 Missense_Mutation p.S187L 0.73 tolerated(0.42) benign(0.048) TCGA-K4-A5RJ-01 X 151283722 151283722 G A RP11-1007I13.4 RNA 0.43 TCGA-K4-A5RJ-01 X 152139014 152139014 G T ZNF185 Missense_Mutation p.D699Y 0.67 deleterious(0) probably_damaging(0.977) TCGA-K4-A5RJ-01 X 153533502 153533502 C T TKTL1 Intron 0.76 TCGA-K4-A5RJ-01 X 24024468 24024468 C G KLHL15 Missense_Mutation p.E115Q 0.41 deleterious(0.04) possibly_damaging(0.874) TCGA-K4-A5RJ-01 X 24227093 24227093 C T ZFX Silent p.L390L 0.54 TCGA-K4-A5RJ-01 X 2861118 2861118 C T ARSE Missense_Mutation p.G372R 0.44 deleterious(0.01) probably_damaging(1) TCGA-K4-A5RJ-01 X 34961554 34961554 G T FAM47B Missense_Mutation p.Q202H 0.22 deleterious(0.03) benign(0.435) TCGA-K4-A5RJ-01 X 34961555 34961555 C A FAM47B Missense_Mutation p.L203I 0.21 tolerated(0.44) possibly_damaging(0.648) TCGA-K4-A5RJ-01 X 40448292 40448292 G A ATP6AP2 Missense_Mutation p.R31Q 0.46 tolerated(0.74) benign(0.005) TCGA-K4-A5RJ-01 X 47836895 47836895 C G ZNF182 Missense_Mutation p.E197D 0.43 tolerated(0.29) benign(0.135) TCGA-K4-A5RJ-01 X 53631594 53631594 G A HUWE1 Missense_Mutation p.H900Y 0.52 benign(0.267) TCGA-K4-A5RJ-01 X 53989324 53989324 C T PHF8 Missense_Mutation p.R867Q 0.37 deleterious(0.05) benign(0.227) TCGA-K4-A5RJ-01 X 69459702 69459702 C G AWAT1 Missense_Mutation p.F250L 0.49 tolerated(0.36) probably_damaging(0.998) TCGA-K4-A5RJ-01 X 73071525 73071525 A G XIST RNA 0.43 TCGA-K4-A6FZ-01 10 105362460 105362460 C A SH3PXD2A Nonsense_Mutation p.E811* 0.32 TCGA-K4-A6FZ-01 10 116057124 116057124 T A AFAP1L2 Missense_Mutation p.E721V 0.45 deleterious(0.04) benign(0.048) TCGA-K4-A6FZ-01 10 118351365 118351365 T A PNLIPRP1 Silent p.I44I 0.39 TCGA-K4-A6FZ-01 10 118441366 118441366 A T HSPA12A Missense_Mutation p.N286K 0.27 tolerated(0.22) benign(0.312) TCGA-K4-A6FZ-01 10 129906269 129906269 C G MKI67 Missense_Mutation p.E1279Q 0.30 tolerated(0.41) possibly_damaging(0.511) TCGA-K4-A6FZ-01 10 13214465 13214465 C T MCM10 Silent p.L147L 0.32 TCGA-K4-A6FZ-01 10 25226221 25226221 T A PRTFDC1 Silent p.G77G 0.08 TCGA-K4-A6FZ-01 10 32324546 32324546 G A KIF5B Missense_Mutation p.S289L 0.30 deleterious(0) possibly_damaging(0.695) TCGA-K4-A6FZ-01 10 43695206 43695206 T C RASGEF1A Missense_Mutation p.D256G 0.31 deleterious(0.02) benign(0.12) TCGA-K4-A6FZ-01 10 46967521 46967521 T A SYT15 Nonsense_Mutation p.K186* 0.16 TCGA-K4-A6FZ-01 10 46999520 46999520 G A GPRIN2 Missense_Mutation p.E214K 0.22 tolerated(0.81) benign(0.022) TCGA-K4-A6FZ-01 10 49662194 49662194 T C ARHGAP22 Missense_Mutation p.E284G 0.21 deleterious(0) benign(0.378) TCGA-K4-A6FZ-01 10 59956279 59956279 T C IPMK Missense_Mutation p.D270G 0.23 tolerated(0.06) benign(0.217) TCGA-K4-A6FZ-01 10 74916341 74916341 T C ECD Silent p.E132E 0.39 TCGA-K4-A6FZ-01 10 8100664 8100664 C T GATA3 Missense_Mutation p.S213L 0.22 tolerated(0.11) benign(0.003) TCGA-K4-A6FZ-01 10 95066660 95066660 T C MYOF 3'UTR 0.33 TCGA-K4-A6FZ-01 11 102562566 102562566 A T MMP27 Nonsense_Mutation p.Y491* 0.11 TCGA-K4-A6FZ-01 11 102584011 102584011 T C MMP8 3'UTR 0.30 TCGA-K4-A6FZ-01 11 104872867 104872867 T A CASP5 Missense_Mutation p.K215M 0.24 deleterious(0.01) benign(0.06) TCGA-K4-A6FZ-01 11 10602124 10602124 A G MRVI1 Silent p.G791G 0.31 TCGA-K4-A6FZ-01 11 110007975 110007975 A G ZC3H12C Silent p.G203G 0.26 TCGA-K4-A6FZ-01 11 11398900 11398900 T A GALNT18 Missense_Mutation p.K269M 0.26 deleterious(0.01) benign(0.168) TCGA-K4-A6FZ-01 11 118771612 118771612 G A BCL9L Missense_Mutation p.S947L 0.35 probably_damaging(0.996) TCGA-K4-A6FZ-01 11 122669667 122669667 A T UBASH3B Missense_Mutation p.S459C 0.12 deleterious(0) possibly_damaging(0.893) TCGA-K4-A6FZ-01 11 123900638 123900638 T A OR10G8 Missense_Mutation p.F103L 0.10 tolerated(0.15) possibly_damaging(0.763) TCGA-K4-A6FZ-01 11 124740560 124740560 G A ROBO3 Silent p.T323T 0.27 TCGA-K4-A6FZ-01 11 124748563 124748563 C - ROBO3 Frame_Shift_Del p.P1136Hfs*103 0.20 TCGA-K4-A6FZ-01 11 129743685 129743685 C G NFRKB Missense_Mutation p.Q860H 0.13 tolerated_low_confidence(0.17) probably_damaging(0.997) TCGA-K4-A6FZ-01 11 13380068 13380068 C T ARNTL Silent p.N103N 0.24 TCGA-K4-A6FZ-01 11 15096700 15096700 G A CALCB Missense_Mutation p.M60I 0.23 deleterious(0.02) benign(0.159) TCGA-K4-A6FZ-01 11 16838378 16838378 G A PLEKHA7 Missense_Mutation p.S612F 0.20 deleterious(0) probably_damaging(0.977) TCGA-K4-A6FZ-01 11 17336988 17336988 A G NUCB2 Missense_Mutation p.E323G 0.29 deleterious(0.03) possibly_damaging(0.827) TCGA-K4-A6FZ-01 11 17757672 17757672 C T KCNC1 Silent p.D41D 0.07 TCGA-K4-A6FZ-01 11 18741270 18741270 T A IGSF22 Missense_Mutation p.E230V 0.27 deleterious(0) benign(0.401) TCGA-K4-A6FZ-01 11 22381071 22381071 G A SLC17A6 Missense_Mutation p.E191K 0.10 deleterious(0) possibly_damaging(0.491) TCGA-K4-A6FZ-01 11 22399001 22399001 T C SLC17A6 Silent p.Y488Y 0.18 TCGA-K4-A6FZ-01 11 281623 281623 A G NLRP6 Missense_Mutation p.E630G 0.27 deleterious(0) possibly_damaging(0.804) TCGA-K4-A6FZ-01 11 319737 319737 G A IFITM3 3'UTR 0.55 TCGA-K4-A6FZ-01 11 397662 397662 G A PKP3 Silent p.Q356Q 0.19 TCGA-K4-A6FZ-01 11 405884 405884 C G SIGIRR 3'UTR 0.24 TCGA-K4-A6FZ-01 11 48142638 48142638 G A PTPRJ Missense_Mutation p.A146T 0.26 tolerated(0.12) benign(0.084) TCGA-K4-A6FZ-01 11 48286133 48286133 C T OR4X1 Missense_Mutation p.H241Y 0.27 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 11 48286147 48286147 C T OR4X1 Silent p.V245V 0.28 TCGA-K4-A6FZ-01 11 5009431 5009431 G A MMP26 5'UTR 0.21 TCGA-K4-A6FZ-01 11 56057739 56057739 A T OR8H1 Nonsense_Mutation p.L267* 0.15 TCGA-K4-A6FZ-01 11 59271342 59271342 G A OR4D11 Missense_Mutation p.M98I 0.30 tolerated(0.56) benign(0.001) TCGA-K4-A6FZ-01 11 63594623 63594623 C A C11orf84 3'UTR 0.14 TCGA-K4-A6FZ-01 11 63978239 63978239 A G FERMT3 Missense_Mutation p.N106S 0.09 tolerated(0.09) benign(0.063) TCGA-K4-A6FZ-01 11 64707138 64707138 G A C11orf85 Silent p.F216F 0.25 TCGA-K4-A6FZ-01 11 65810690 65810690 T C GAL3ST3 Missense_Mutation p.E195G 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-K4-A6FZ-01 11 65810742 65810742 C T GAL3ST3 Missense_Mutation p.A178T 0.11 tolerated(0.42) possibly_damaging(0.508) TCGA-K4-A6FZ-01 11 66099832 66099832 G C RIN1 Missense_Mutation p.A756G 0.26 deleterious_low_confidence(0.01) benign(0.364) TCGA-K4-A6FZ-01 11 66613663 66613663 C T RCE1 3'UTR 0.60 TCGA-K4-A6FZ-01 11 68671188 68671188 C T MRPL21 Intron 0.29 TCGA-K4-A6FZ-01 11 6891510 6891510 C T OR10A2 Silent p.V175V 0.21 TCGA-K4-A6FZ-01 11 7059796 7059796 G C NLRP14 Splice_Site 0.15 TCGA-K4-A6FZ-01 11 73688958 73688958 T C UCP2 Missense_Mutation p.K104E 0.29 deleterious(0) probably_damaging(0.977) TCGA-K4-A6FZ-01 11 85445189 85445189 G A SYTL2 Nonsense_Mutation p.Q394* 0.12 TCGA-K4-A6FZ-01 11 92086016 92086016 G T FAT3 Silent p.V246V 0.29 TCGA-K4-A6FZ-01 11 9499976 9499976 A G ZNF143 Missense_Mutation p.E138G 0.19 deleterious(0) probably_damaging(0.972) TCGA-K4-A6FZ-01 12 10277901 10277901 C T CLEC7A Missense_Mutation p.E163K 0.30 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 12 109845605 109845605 T A MYO1H Missense_Mutation p.C332S 0.28 tolerated(1) benign(0.01) TCGA-K4-A6FZ-01 12 110969510 110969510 C G RAD9B 3'UTR 0.33 TCGA-K4-A6FZ-01 12 111786115 111786115 G C CUX2 Missense_Mutation p.E1483Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 12 121432060 121432060 C T HNF1A Silent p.A269A 0.51 TCGA-K4-A6FZ-01 12 125509956 125509956 G A BRI3BP Missense_Mutation p.D246N 0.59 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-K4-A6FZ-01 12 130884256 130884256 G C RIMBP2 Missense_Mutation p.Q1034E 0.20 deleterious_low_confidence(0.01) benign(0.066) TCGA-K4-A6FZ-01 12 132498204 132498204 C T EP400 Missense_Mutation p.H1261Y 0.52 unknown(0) TCGA-K4-A6FZ-01 12 31240903 31240903 G C DDX11 Missense_Mutation p.E224Q 0.20 tolerated(0.05) probably_damaging(0.971) TCGA-K4-A6FZ-01 12 42632007 42632007 G A YAF2 5'UTR 0.22 TCGA-K4-A6FZ-01 12 4721767 4721767 C A DYRK4 Missense_Mutation p.Q402K 0.26 tolerated(0.18) benign(0.019) TCGA-K4-A6FZ-01 12 48528778 48528778 T C PFKM Missense_Mutation p.I338T 0.26 tolerated(0.07) benign(0.168) TCGA-K4-A6FZ-01 12 49087643 49087643 G A CCNT1 Silent p.L452L 0.20 TCGA-K4-A6FZ-01 12 49422947 49422947 C A KMT2D Silent p.G4716G 0.33 TCGA-K4-A6FZ-01 12 53216952 53216952 C G KRT79 Missense_Mutation p.Q405H 0.09 deleterious(0.04) possibly_damaging(0.845) TCGA-K4-A6FZ-01 12 56492623 56492623 G C ERBB3 Missense_Mutation p.E925Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 12 6690929 6690929 C G CHD4 Missense_Mutation p.E1523Q 0.34 tolerated(0.07) probably_damaging(0.913) TCGA-K4-A6FZ-01 12 7942287 7942287 C A NANOG Missense_Mutation p.P26H 0.05 deleterious(0) probably_damaging(0.968) TCGA-K4-A6FZ-01 12 86198550 86198550 G T RASSF9 Missense_Mutation p.T413N 0.28 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 12 8693422 8693422 T A CLEC4E 5'UTR 0.30 TCGA-K4-A6FZ-01 13 103268850 103268850 A T TPP2 Missense_Mutation p.Q165H 0.25 tolerated(0.09) probably_damaging(0.992) TCGA-K4-A6FZ-01 13 110804792 110804792 T A COL4A1 Missense_Mutation p.E1606V 0.27 unknown(0) TCGA-K4-A6FZ-01 13 111944588 111944588 C G ARHGEF7 Missense_Mutation p.S774C 0.14 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-K4-A6FZ-01 13 19752452 19752452 G A TUBA3C Silent p.Y103Y 0.16 TCGA-K4-A6FZ-01 13 21063599 21063599 C T CRYL1 Silent p.L62L 0.13 TCGA-K4-A6FZ-01 13 23907320 23907320 T C SACS Silent p.K3565K 0.15 TCGA-K4-A6FZ-01 13 25373577 25373577 C G RNF17 Missense_Mutation p.R482G 0.07 deleterious(0) probably_damaging(0.982) TCGA-K4-A6FZ-01 13 25744991 25744991 G T AMER2 Missense_Mutation p.P256Q 0.33 tolerated(0.57) benign(0.023) TCGA-K4-A6FZ-01 13 30097554 30097554 C T SLC7A1 Missense_Mutation p.A300T 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-K4-A6FZ-01 13 32605914 32605914 C T FRY 5'UTR 0.19 TCGA-K4-A6FZ-01 13 32906757 32906757 A G BRCA2 Missense_Mutation p.D381G 0.13 tolerated(0.2) benign(0.081) TCGA-K4-A6FZ-01 13 33327591 33327591 A G PDS5B Missense_Mutation p.E953G 0.17 tolerated(0.07) benign(0.036) TCGA-K4-A6FZ-01 13 37559764 37559764 A G ALG5 Silent p.P187P 0.21 TCGA-K4-A6FZ-01 13 41507750 41507750 G A ELF1 Silent p.I557I 0.36 TCGA-K4-A6FZ-01 13 48542734 48542734 T C SUCLA2 Silent p.G266G 0.56 TCGA-K4-A6FZ-01 13 48947539 48947539 A G RB1 Splice_Site p.X376_splice 0.31 TCGA-K4-A6FZ-01 13 61986290 61986291 - A PCDH20 Frame_Shift_Ins p.V648Cfs*3 0.20 TCGA-K4-A6FZ-01 13 96293688 96293688 T C DZIP1 Missense_Mutation p.H153R 0.15 tolerated(0.29) benign(0.034) TCGA-K4-A6FZ-01 14 102028681 102028681 C T DIO3 Missense_Mutation p.S283F 0.09 deleterious(0.01) benign(0.264) TCGA-K4-A6FZ-01 14 106805316 106805316 A G IGHV4-31 Missense_Mutation p.S83P 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.535) TCGA-K4-A6FZ-01 14 20528872 20528872 C A OR4L1 Silent p.V223V 0.15 TCGA-K4-A6FZ-01 14 24653001 24653001 G C IPO4 Nonsense_Mutation p.S658* 0.11 TCGA-K4-A6FZ-01 14 24685189 24685189 G C MDP1 5'UTR 0.43 TCGA-K4-A6FZ-01 14 24685215 24685215 G C MDP1 5'UTR 0.45 TCGA-K4-A6FZ-01 14 24686377 24686377 G A NEDD8 Missense_Mutation p.H68Y 0.39 deleterious(0.04) unknown(0) TCGA-K4-A6FZ-01 14 24739200 24739200 A C RABGGTA Missense_Mutation p.L129R 0.34 deleterious(0) probably_damaging(0.96) TCGA-K4-A6FZ-01 14 31792942 31792942 C A HEATR5A Missense_Mutation p.V1206F 0.30 tolerated(0.15) benign(0.008) TCGA-K4-A6FZ-01 14 33015330 33015330 G A AKAP6 Missense_Mutation p.E491K 0.17 tolerated(0.2) benign(0.146) TCGA-K4-A6FZ-01 14 33291676 33291676 A G AKAP6 Missense_Mutation p.M1553V 0.29 tolerated_low_confidence(0.88) benign(0.001) TCGA-K4-A6FZ-01 14 36988561 36988561 A G NKX2-1 Missense_Mutation p.M31T 0.52 deleterious(0) probably_damaging(0.946) TCGA-K4-A6FZ-01 14 52949566 52949566 T C TXNDC16 Missense_Mutation p.D409G 0.37 tolerated(0.25) benign(0.326) TCGA-K4-A6FZ-01 14 53119989 53119989 G A ERO1L Nonsense_Mutation p.Q285* 0.12 TCGA-K4-A6FZ-01 14 54948169 54948169 G A GMFB Missense_Mutation p.S53L 0.13 deleterious(0.01) possibly_damaging(0.848) TCGA-K4-A6FZ-01 14 55819289 55819289 A G FBXO34 3'UTR 0.26 TCGA-K4-A6FZ-01 14 58678052 58678052 C T ACTR10 Silent p.L129L 0.08 TCGA-K4-A6FZ-01 14 58701256 58701256 C T ACTR10 Missense_Mutation p.S414F 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 14 58975416 58975416 G C KIAA0586 Missense_Mutation p.D1491H 0.39 deleterious(0) possibly_damaging(0.792) TCGA-K4-A6FZ-01 14 64152824 64152824 C G SGPP1 Nonstop_Mutation p.*442Sext*29 0.47 TCGA-K4-A6FZ-01 14 65392727 65392727 G A CHURC1-FNTB Splice_Site p.X60_splice 0.31 TCGA-K4-A6FZ-01 14 70924950 70924950 T A ADAM21 Missense_Mutation p.M245K 0.12 deleterious(0) benign(0.158) TCGA-K4-A6FZ-01 14 71570252 71570252 A T PCNX Missense_Mutation p.Q1987H 0.09 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 15 34673686 34673686 C A GOLGA8A Nonsense_Mutation p.E580* 0.08 TCGA-K4-A6FZ-01 15 34673687 34673687 C T GOLGA8A Silent p.Q579Q 0.08 TCGA-K4-A6FZ-01 15 43313566 43313566 T C UBR1 Silent p.G949G 0.37 TCGA-K4-A6FZ-01 15 43328427 43328427 C T UBR1 Silent p.Q713Q 0.33 TCGA-K4-A6FZ-01 15 43712518 43712518 C T TP53BP1 Missense_Mutation p.E1556K 0.28 deleterious(0) probably_damaging(0.993) TCGA-K4-A6FZ-01 15 63068960 63068960 C G TLN2 Intron 0.31 TCGA-K4-A6FZ-01 15 63970083 63970083 G A HERC1 Missense_Mutation p.S2344F 0.31 probably_damaging(0.948) TCGA-K4-A6FZ-01 15 66797732 66797732 G T ZWILCH Intron 0.34 TCGA-K4-A6FZ-01 15 72141297 72141297 C G MYO9A Silent p.L2242L 0.12 TCGA-K4-A6FZ-01 15 73551119 73551119 G A NEO1 Missense_Mutation p.G702E 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-K4-A6FZ-01 15 83932916 83932916 C T BNC1 Missense_Mutation p.E363K 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-K4-A6FZ-01 15 83932967 83932967 C G BNC1 Missense_Mutation p.E346Q 0.13 tolerated(0.06) possibly_damaging(0.745) TCGA-K4-A6FZ-01 15 83933235 83933235 C T BNC1 Silent p.L256L 0.16 TCGA-K4-A6FZ-01 15 90321349 90321349 G C MESP2 Silent p.L326L 0.12 TCGA-K4-A6FZ-01 15 91136983 91136983 G A CRTC3 Missense_Mutation p.R116Q 0.18 deleterious(0.04) benign(0.177) TCGA-K4-A6FZ-01 15 93498722 93498722 G A CHD2 Missense_Mutation p.E597K 0.41 deleterious(0) probably_damaging(0.996) TCGA-K4-A6FZ-01 16 15851723 15851723 C T MYH11 Silent p.G519G 0.45 TCGA-K4-A6FZ-01 16 2125869 2125869 C T TSC2 Missense_Mutation p.S872F 0.24 deleterious(0) probably_damaging(0.986) TCGA-K4-A6FZ-01 16 30771527 30771527 C T C16orf93 Intron 0.46 TCGA-K4-A6FZ-01 16 4412729 4412729 G C CORO7 Missense_Mutation p.S429C 0.31 deleterious(0.01) probably_damaging(0.962) TCGA-K4-A6FZ-01 16 47622868 47622868 A T PHKB Missense_Mutation p.D308V 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-K4-A6FZ-01 16 57101356 57101356 G C NLRC5 Missense_Mutation p.E1460D 0.29 deleterious(0.03) benign(0.21) TCGA-K4-A6FZ-01 16 57101724 57101724 G C NLRC5 Missense_Mutation p.E1495Q 0.32 deleterious(0.03) possibly_damaging(0.772) TCGA-K4-A6FZ-01 16 863580 863580 C T PRR25 Missense_Mutation p.P310S 0.32 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-K4-A6FZ-01 17 10304067 10304067 G C MYH8 Missense_Mutation p.I1125M 0.30 deleterious(0.02) possibly_damaging(0.853) TCGA-K4-A6FZ-01 17 10317744 10317744 A G MYH8 Missense_Mutation p.I288T 0.20 deleterious(0) probably_damaging(0.996) TCGA-K4-A6FZ-01 17 15619526 15619526 A T ZNF286A Missense_Mutation p.E163V 0.22 deleterious(0) benign(0.439) TCGA-K4-A6FZ-01 17 17083938 17083938 C G MPRIP Intron 0.29 TCGA-K4-A6FZ-01 17 17415891 17415891 A G PEMT Missense_Mutation p.L133P 0.14 deleterious(0) probably_damaging(0.99) TCGA-K4-A6FZ-01 17 1795168 1795168 T C RPA1 Silent p.C531C 0.29 TCGA-K4-A6FZ-01 17 25753578 25753578 T C TBC1D3P5 RNA 0.26 TCGA-K4-A6FZ-01 17 2598756 2598757 - GCAT CLUH Frame_Shift_Ins p.R780Hfs*32 0.27 TCGA-K4-A6FZ-01 17 27419978 27419978 C G MYO18A Missense_Mutation p.K1656N 0.27 deleterious(0) possibly_damaging(0.857) TCGA-K4-A6FZ-01 17 30677271 30677271 C G ZNF207 5'UTR 0.17 TCGA-K4-A6FZ-01 17 33427904 33427904 G A RAD51D 3'UTR 0.19 TCGA-K4-A6FZ-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.22 deleterious(0) probably_damaging(0.994) TCGA-K4-A6FZ-01 17 38976578 38976578 C T KRT10 Missense_Mutation p.R322K 0.26 deleterious(0) probably_damaging(0.994) TCGA-K4-A6FZ-01 17 39471729 39471729 A T KRTAP17-1 Nonsense_Mutation p.C58* 0.25 TCGA-K4-A6FZ-01 17 40635067 40635067 C T ATP6V0A1 Missense_Mutation p.S250L 0.24 deleterious(0.02) possibly_damaging(0.794) TCGA-K4-A6FZ-01 17 40843439 40843439 C G CNTNAP1 Missense_Mutation p.L752V 0.24 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 17 48586017 48586017 C T MYCBPAP Silent p.F37F 0.20 TCGA-K4-A6FZ-01 17 57742152 57742152 G C CLTC Missense_Mutation p.G509A 0.16 deleterious(0) benign(0.062) TCGA-K4-A6FZ-01 17 58275713 58275713 C T USP32 Silent p.R1114R 0.27 TCGA-K4-A6FZ-01 17 60038273 60038273 C G MED13 Missense_Mutation p.G1812A 0.19 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 17 7212983 7212983 G A EIF5A Missense_Mutation p.G40E 0.20 deleterious(0) possibly_damaging(0.891) TCGA-K4-A6FZ-01 17 72285798 72285798 T A DNAI2 Nonsense_Mutation p.L178* 0.38 TCGA-K4-A6FZ-01 17 72916725 72916725 A - USH1G Frame_Shift_Del p.L69Rfs*26 0.15 TCGA-K4-A6FZ-01 17 73832148 73832148 C G UNC13D Missense_Mutation p.D497H 0.12 deleterious(0.03) probably_damaging(0.938) TCGA-K4-A6FZ-01 17 7478077 7478077 C T EIF4A1 Intron 0.33 TCGA-K4-A6FZ-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.36 deleterious(0) probably_damaging(0.947) TCGA-K4-A6FZ-01 17 7577505 7577505 T A TP53 Missense_Mutation p.D259V 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-K4-A6FZ-01 17 76851697 76851697 A G TIMP2 3'UTR 0.22 TCGA-K4-A6FZ-01 17 77711737 77711737 A G ENPP7 Silent p.G423G 0.17 TCGA-K4-A6FZ-01 17 78264488 78264488 C T RNF213 Missense_Mutation p.S411L 0.30 benign(0.006) TCGA-K4-A6FZ-01 17 79848567 79848567 G A ALYREF Nonsense_Mutation p.Q130* 0.15 TCGA-K4-A6FZ-01 17 80159645 80159645 T C CCDC57 Missense_Mutation p.Y59C 0.16 deleterious(0) probably_damaging(0.994) TCGA-K4-A6FZ-01 17 8387498 8387498 C T MYH10 Silent p.K1711K 0.21 TCGA-K4-A6FZ-01 17 8736297 8736297 G C PIK3R6 Silent p.A237A 0.15 TCGA-K4-A6FZ-01 17 973249 973249 C T ABR Missense_Mutation p.D326N 0.25 deleterious(0) probably_damaging(0.995) TCGA-K4-A6FZ-01 18 14543083 14543083 C T POTEC Silent p.R21R 0.22 TCGA-K4-A6FZ-01 18 30275515 30275515 A G KLHL14 Missense_Mutation p.I357T 0.28 tolerated(0.47) benign(0.055) TCGA-K4-A6FZ-01 18 31463386 31463386 A G NOL4 Silent p.D515D 0.19 TCGA-K4-A6FZ-01 18 44336537 44336537 G T ST8SIA5 5'UTR 0.53 TCGA-K4-A6FZ-01 18 54424091 54424091 A G WDR7 Missense_Mutation p.E756G 0.24 tolerated(0.15) probably_damaging(0.997) TCGA-K4-A6FZ-01 18 56586341 56586341 C T ZNF532 Silent p.I274I 0.21 TCGA-K4-A6FZ-01 18 64178818 64178818 G A CDH19 Silent p.I521I 0.27 TCGA-K4-A6FZ-01 19 10477149 10477149 G C TYK2 Silent p.L191L 0.21 TCGA-K4-A6FZ-01 19 10663608 10663608 G T ATG4D Silent p.L430L 0.28 TCGA-K4-A6FZ-01 19 12015571 12015571 C T ZNF69 Missense_Mutation p.S106F 0.14 tolerated(0.79) probably_damaging(0.938) TCGA-K4-A6FZ-01 19 12980042 12980042 T A MAST1 Missense_Mutation p.F979Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 19 14270344 14270344 C T LPHN1 Nonsense_Mutation p.W636* 0.19 TCGA-K4-A6FZ-01 19 14952606 14952606 A G OR7A10 Silent p.F28F 0.13 TCGA-K4-A6FZ-01 19 15079206 15079206 T A SLC1A6 Missense_Mutation p.I153F 0.26 deleterious(0) benign(0.068) TCGA-K4-A6FZ-01 19 16918496 16918496 T C NWD1 Missense_Mutation p.V1279A 0.14 deleterious(0) probably_damaging(0.981) TCGA-K4-A6FZ-01 19 17039806 17039806 G C CPAMD8 Silent p.L1077L 0.36 TCGA-K4-A6FZ-01 19 19258614 19258614 C G MEF2B Missense_Mutation p.D96H 0.25 deleterious(0) possibly_damaging(0.874) TCGA-K4-A6FZ-01 19 22363164 22363164 T C ZNF676 Missense_Mutation p.E452G 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-K4-A6FZ-01 19 32845790 32845790 A T ZNF507 Missense_Mutation p.E685V 0.20 deleterious(0) probably_damaging(0.95) TCGA-K4-A6FZ-01 19 34890215 34890215 A T GPI Missense_Mutation p.D469V 0.24 tolerated_low_confidence(0.06) benign(0.005) TCGA-K4-A6FZ-01 19 35850630 35850630 T A FFAR3 Missense_Mutation p.S280T 0.12 deleterious(0) probably_damaging(0.927) TCGA-K4-A6FZ-01 19 35850669 35850669 A C FFAR3 Silent p.R293R 0.14 TCGA-K4-A6FZ-01 19 36004467 36004467 C G DMKN 5'UTR 0.46 TCGA-K4-A6FZ-01 19 36109033 36109033 G C HAUS5 Missense_Mutation p.E253Q 0.10 tolerated(0.22) probably_damaging(0.977) TCGA-K4-A6FZ-01 19 36339023 36339023 T G NPHS1 Missense_Mutation p.K454Q 0.21 tolerated(0.3) benign(0.004) TCGA-K4-A6FZ-01 19 36727606 36727606 T C ZNF146 Silent p.L88L 0.27 TCGA-K4-A6FZ-01 19 38896245 38896245 A T FAM98C Silent p.T240T 0.20 TCGA-K4-A6FZ-01 19 40197889 40197889 G A LGALS14 Missense_Mutation p.R84Q 0.24 tolerated(0.33) benign(0.34) TCGA-K4-A6FZ-01 19 42507504 42507504 T A GRIK5 Missense_Mutation p.R832W 0.35 deleterious(0) possibly_damaging(0.78) TCGA-K4-A6FZ-01 19 4817198 4817198 C G TICAM1 Missense_Mutation p.V398L 0.14 deleterious(0) probably_damaging(0.996) TCGA-K4-A6FZ-01 19 48305214 48305214 G C TPRX1 Missense_Mutation p.H352D 0.12 tolerated_low_confidence(1) benign(0.188) TCGA-K4-A6FZ-01 19 48542541 48542541 T C CABP5 Missense_Mutation p.E91G 0.19 deleterious(0.01) benign(0.114) TCGA-K4-A6FZ-01 19 50482470 50482470 T C VRK3 Missense_Mutation p.M436V 0.32 deleterious(0.02) possibly_damaging(0.733) TCGA-K4-A6FZ-01 19 52327347 52327347 A G FPR3 Missense_Mutation p.I116V 0.22 deleterious(0) possibly_damaging(0.759) TCGA-K4-A6FZ-01 19 53209742 53209742 G A ZNF611 Missense_Mutation p.S189L 0.28 tolerated(0.3) benign(0.001) TCGA-K4-A6FZ-01 19 55014133 55014133 C A LAIR2 5'UTR 0.25 TCGA-K4-A6FZ-01 19 5604869 5604869 C T SAFB2 Missense_Mutation p.D459N 0.15 deleterious(0) possibly_damaging(0.484) TCGA-K4-A6FZ-01 19 56436334 56436334 T A NLRP13 Silent p.A129A 0.20 TCGA-K4-A6FZ-01 19 57876191 57876191 T C TRAPPC2P1 5'UTR 0.35 TCGA-K4-A6FZ-01 19 59069642 59069642 T C UBE2M Missense_Mutation p.K36R 0.11 tolerated(0.1) possibly_damaging(0.718) TCGA-K4-A6FZ-01 19 619084 619084 G A POLRMT Silent p.L1060L 0.11 TCGA-K4-A6FZ-01 19 804061 804061 C G PTBP1 Missense_Mutation p.F47L 0.17 tolerated(0.32) benign(0.026) TCGA-K4-A6FZ-01 19 9020125 9020125 T C MUC16 Missense_Mutation p.D12457G 0.15 benign(0.157) TCGA-K4-A6FZ-01 19 9066215 9066215 T A MUC16 Missense_Mutation p.R7077S 0.24 unknown(0) TCGA-K4-A6FZ-01 19 9089227 9089227 C T MUC16 Missense_Mutation p.G863E 0.17 unknown(0) TCGA-K4-A6FZ-01 1 103343587 103343587 A G COL11A1 Silent p.C1803C 0.06 TCGA-K4-A6FZ-01 1 10725220 10725220 T C CASZ1 Missense_Mutation p.D142G 0.21 deleterious_low_confidence(0.04) benign(0.002) TCGA-K4-A6FZ-01 1 110466361 110466361 T C CSF1 Missense_Mutation p.V373A 0.36 tolerated(1) benign(0.004) TCGA-K4-A6FZ-01 1 110561035 110561035 G A AHCYL1 Missense_Mutation p.M388I 0.37 deleterious(0) possibly_damaging(0.83) TCGA-K4-A6FZ-01 1 112281853 112281853 C T FAM212B Silent p.E4E 0.19 TCGA-K4-A6FZ-01 1 114483128 114483128 A T HIPK1 Missense_Mutation p.K41N 0.30 deleterious(0.04) benign(0.13) TCGA-K4-A6FZ-01 1 117529613 117529613 G C PTGFRN 3'UTR 0.30 TCGA-K4-A6FZ-01 1 120458622 120458622 C G NOTCH2 Missense_Mutation p.L2241F 0.18 tolerated(0.33) benign(0.131) TCGA-K4-A6FZ-01 1 149877504 149877504 A G SV2A Missense_Mutation p.F658S 0.26 deleterious(0) probably_damaging(0.994) TCGA-K4-A6FZ-01 1 149883409 149883409 G A SV2A Missense_Mutation p.S249L 0.40 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 1 150552032 150552032 G A MCL1 5'UTR 0.43 TCGA-K4-A6FZ-01 1 152080946 152080946 A T TCHH Missense_Mutation p.L1583I 0.52 unknown(0) TCGA-K4-A6FZ-01 1 155109375 155109376 - TGCG SLC50A1 Frame_Shift_Ins p.L79Cfs*46 0.33 TCGA-K4-A6FZ-01 1 155717479 155717479 C T GON4L 3'Flank 0.13 TCGA-K4-A6FZ-01 1 158151855 158151855 A C CD1D Missense_Mutation p.E121A 0.14 deleterious(0.03) possibly_damaging(0.789) TCGA-K4-A6FZ-01 1 158153756 158153756 C T CD1D Missense_Mutation p.A306V 0.13 tolerated(0.86) benign(0.001) TCGA-K4-A6FZ-01 1 158450035 158450035 T C OR10R2 Missense_Mutation p.F123S 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-K4-A6FZ-01 1 158687368 158687368 C T OR6K3 Missense_Mutation p.D180N 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-K4-A6FZ-01 1 163044180 163044180 G C RGS4 Missense_Mutation p.D247H 0.25 deleterious(0) probably_damaging(0.991) TCGA-K4-A6FZ-01 1 175365753 175365753 G A TNR Silent p.L389L 0.18 TCGA-K4-A6FZ-01 1 185969213 185969213 G A HMCN1 Missense_Mutation p.G1304D 0.42 probably_damaging(1) TCGA-K4-A6FZ-01 1 19430583 19430583 G C UBR4 Missense_Mutation p.T4299S 0.16 possibly_damaging(0.899) TCGA-K4-A6FZ-01 1 197112897 197112897 G C ASPM Missense_Mutation p.S162C 0.09 deleterious(0) possibly_damaging(0.885) TCGA-K4-A6FZ-01 1 209776593 209776593 A G CAMK1G Missense_Mutation p.I86V 0.29 tolerated(0.41) probably_damaging(0.992) TCGA-K4-A6FZ-01 1 210329238 210329238 C A SYT14 Missense_Mutation p.A491E 0.27 deleterious(0.04) possibly_damaging(0.804) TCGA-K4-A6FZ-01 1 21143908 21143908 C T EIF4G3 Missense_Mutation p.E1448K 0.28 deleterious(0.01) benign(0.012) TCGA-K4-A6FZ-01 1 216498866 216498866 G C USH2A Missense_Mutation p.H308Q 0.13 probably_damaging(0.999) TCGA-K4-A6FZ-01 1 22313044 22313044 C G CELA3B Silent p.L221L 0.06 TCGA-K4-A6FZ-01 1 227216691 227216691 G C CDC42BPA Missense_Mutation p.Q1332E 0.23 deleterious(0.01) benign(0.026) TCGA-K4-A6FZ-01 1 228486381 228486381 T A OBSCN Nonsense_Mutation p.C4391* 0.23 TCGA-K4-A6FZ-01 1 231377107 231377107 C A GNPAT 5'UTR 0.38 TCGA-K4-A6FZ-01 1 237947968 237947968 T A RYR2 Missense_Mutation p.V4319D 0.14 probably_damaging(0.987) TCGA-K4-A6FZ-01 1 243456392 243456392 G - SDCCAG8 Splice_Site p.X183_splice 0.33 TCGA-K4-A6FZ-01 1 247875922 247875922 A G OR6F1 Silent p.L46L 0.13 TCGA-K4-A6FZ-01 1 248308574 248308574 A G OR2M5 Missense_Mutation p.N42S 0.23 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 1 3335255 3335255 A T PRDM16 Missense_Mutation p.R962S 0.25 deleterious(0) possibly_damaging(0.53) TCGA-K4-A6FZ-01 1 39853529 39853529 C T MACF1 Silent p.L2943L 0.32 TCGA-K4-A6FZ-01 1 39876511 39876511 G A KIAA0754 Missense_Mutation p.V56I 0.25 benign(0.198) TCGA-K4-A6FZ-01 1 43777471 43777471 A G TIE1 Missense_Mutation p.D488G 0.28 tolerated(0.08) benign(0.002) TCGA-K4-A6FZ-01 1 53726133 53726133 C T LRP8 Intron 0.15 TCGA-K4-A6FZ-01 1 63067473 63067473 G C ANGPTL3 Missense_Mutation p.R252T 0.22 tolerated(0.17) benign(0.091) TCGA-K4-A6FZ-01 1 70488913 70488913 G T LRRC7 Missense_Mutation p.Q512H 0.34 tolerated_low_confidence(0.19) benign(0.145) TCGA-K4-A6FZ-01 1 70503921 70503921 A C LRRC7 Missense_Mutation p.N767T 0.30 deleterious_low_confidence(0.03) benign(0.001) TCGA-K4-A6FZ-01 1 71318502 71318502 T C PTGER3 3'UTR 0.30 TCGA-K4-A6FZ-01 20 21362667 21362667 C T XRN2 Missense_Mutation p.P874S 0.16 tolerated_low_confidence(0.11) benign(0.03) TCGA-K4-A6FZ-01 20 23425567 23425567 A T CSTL1 3'UTR 0.20 TCGA-K4-A6FZ-01 20 23856796 23856796 G A CST5 3'UTR 0.29 TCGA-K4-A6FZ-01 20 36856592 36856592 T A KIAA1755 Missense_Mutation p.Q641L 0.18 deleterious(0.03) possibly_damaging(0.88) TCGA-K4-A6FZ-01 20 37154055 37154055 C T RALGAPB Missense_Mutation p.S599L 0.17 tolerated(0.74) benign(0.103) TCGA-K4-A6FZ-01 20 37154110 37154110 C T RALGAPB Silent p.I617I 0.20 TCGA-K4-A6FZ-01 20 37154575 37154575 C T RALGAPB Missense_Mutation p.S647F 0.14 tolerated(0.14) benign(0.001) TCGA-K4-A6FZ-01 20 37384545 37384545 A T ACTR5 Missense_Mutation p.I347L 0.29 tolerated(0.51) benign(0.016) TCGA-K4-A6FZ-01 20 39990843 39990843 A T EMILIN3 Missense_Mutation p.L456M 0.29 tolerated(1) benign(0.002) TCGA-K4-A6FZ-01 20 47266046 47266046 A T PREX1 Missense_Mutation p.L1033M 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.498) TCGA-K4-A6FZ-01 20 54824261 54824261 A G MC3R Missense_Mutation p.D121G 0.21 deleterious(0.01) probably_damaging(1) TCGA-K4-A6FZ-01 20 56140135 56140135 G C PCK1 Missense_Mutation p.G453A 0.25 deleterious(0.01) possibly_damaging(0.785) TCGA-K4-A6FZ-01 20 6015166 6015166 C T CRLS1 Silent p.F262F 0.16 TCGA-K4-A6FZ-01 20 60508157 60508157 A C CDH4 Missense_Mutation p.E785A 0.16 deleterious(0) probably_damaging(0.992) TCGA-K4-A6FZ-01 20 62120353 62120353 C T EEF1A2 Silent p.L394L 0.26 TCGA-K4-A6FZ-01 20 62324281 62324281 G A RTEL1 Missense_Mutation p.D950N 0.26 tolerated(0.15) benign(0.362) TCGA-K4-A6FZ-01 20 62701696 62701696 A T TCEA2 Missense_Mutation p.N201Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 21 22804538 22804538 C T NCAM2 Nonsense_Mutation p.Q531* 0.22 TCGA-K4-A6FZ-01 21 35468073 35468073 G A SLC5A3 Missense_Mutation p.M192I 0.46 tolerated(0.1) possibly_damaging(0.893) TCGA-K4-A6FZ-01 21 38132086 38132086 C G HLCS Missense_Mutation p.K579N 0.30 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 21 45518260 45518260 A T TRAPPC10 Missense_Mutation p.E1064V 0.18 deleterious(0.02) benign(0.297) TCGA-K4-A6FZ-01 21 45987830 45987830 T C TSPEAR Missense_Mutation p.I48V 0.32 tolerated(1) benign(0.002) TCGA-K4-A6FZ-01 21 46047221 46047221 C A KRTAP10-9 Missense_Mutation p.L45M 0.34 deleterious(0.01) unknown(0) TCGA-K4-A6FZ-01 22 18102253 18102253 C T ATP6V1E1 Missense_Mutation p.E25K 0.25 tolerated(0.06) benign(0.434) TCGA-K4-A6FZ-01 22 18975341 18975341 G T DGCR5 RNA 0.33 TCGA-K4-A6FZ-01 22 21345947 21345947 C T LZTR1 Silent p.L274L 0.65 TCGA-K4-A6FZ-01 22 21346500 21346500 C T LZTR1 Intron 0.70 TCGA-K4-A6FZ-01 22 21348902 21348902 C T LZTR1 Silent p.F557F 0.70 TCGA-K4-A6FZ-01 22 21350043 21350043 C G LZTR1 Missense_Mutation p.L651V 0.68 deleterious(0.03) benign(0.194) TCGA-K4-A6FZ-01 22 21380297 21380297 C G P2RX6 Intron 0.65 TCGA-K4-A6FZ-01 22 23248635 23248635 G A IGLC3 Nonsense_Mutation p.W42* 0.27 TCGA-K4-A6FZ-01 22 26706761 26706761 A G SEZ6L Missense_Mutation p.D547G 0.28 deleterious(0.04) benign(0.012) TCGA-K4-A6FZ-01 22 36649973 36649973 G A APOL1 5'UTR 0.44 TCGA-K4-A6FZ-01 22 38641993 38641995 GAA - TMEM184B In_Frame_Del p.F102del 0.38 TCGA-K4-A6FZ-01 22 45813510 45813510 C T RIBC2 Silent p.I75I 0.29 TCGA-K4-A6FZ-01 2 11053169 11053169 A C KCNF1 Missense_Mutation p.E206A 0.28 tolerated(0.12) possibly_damaging(0.627) TCGA-K4-A6FZ-01 2 112622403 112622403 G C ANAPC1 Missense_Mutation p.L271V 0.20 tolerated(0.06) probably_damaging(0.996) TCGA-K4-A6FZ-01 2 11304369 11304369 G C PQLC3 Missense_Mutation p.W112C 0.27 deleterious(0.02) possibly_damaging(0.789) TCGA-K4-A6FZ-01 2 11809700 11809700 C T NTSR2 Missense_Mutation p.E186K 0.26 deleterious(0.02) benign(0.418) TCGA-K4-A6FZ-01 2 1271250 1271250 G C SNTG2 Missense_Mutation p.K397N 0.18 deleterious(0.04) benign(0.111) TCGA-K4-A6FZ-01 2 131459893 131459893 C G FAR2P3 RNA 0.56 TCGA-K4-A6FZ-01 2 136362542 136362542 G A R3HDM1 Missense_Mutation p.V43I 0.47 tolerated(0.39) benign(0.031) TCGA-K4-A6FZ-01 2 171243633 171243633 G T MYO3B Missense_Mutation p.L464F 0.09 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 2 176964998 176964998 C T HOXD12 Missense_Mutation p.P157S 0.34 tolerated(0.67) benign(0.011) TCGA-K4-A6FZ-01 2 179442546 179442546 A G TTN Silent p.G22869G 0.30 TCGA-K4-A6FZ-01 2 179464159 179464159 A T TTN Silent p.P18787P 0.41 TCGA-K4-A6FZ-01 2 179465824 179465824 G A TTN Missense_Mutation p.P18603S 0.37 TCGA-K4-A6FZ-01 2 179466261 179466261 A G TTN Missense_Mutation p.V18488A 0.35 TCGA-K4-A6FZ-01 2 179638270 179638270 T A TTN Missense_Mutation p.N2505Y 0.48 TCGA-K4-A6FZ-01 2 179642657 179642657 A G TTN Silent p.S1418S 0.31 TCGA-K4-A6FZ-01 2 190921992 190921992 A G MSTN Missense_Mutation p.C374R 0.48 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 2 1921092 1921092 C T MYT1L Silent p.K499K 0.25 TCGA-K4-A6FZ-01 2 210558900 210558900 A G MAP2 Missense_Mutation p.E669G 0.33 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-K4-A6FZ-01 2 21242618 21242618 G A APOB Silent p.Y992Y 0.23 TCGA-K4-A6FZ-01 2 212426722 212426722 A G ERBB4 Missense_Mutation p.L798P 0.19 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 2 215866332 215866332 T A ABCA12 Missense_Mutation p.E938V 0.37 deleterious(0) possibly_damaging(0.882) TCGA-K4-A6FZ-01 2 219208297 219208297 C A PNKD Missense_Mutation p.L286I 0.30 tolerated(0.24) possibly_damaging(0.705) TCGA-K4-A6FZ-01 2 230672554 230672554 T A TRIP12 Missense_Mutation p.E741V 0.32 deleterious(0) possibly_damaging(0.824) TCGA-K4-A6FZ-01 2 242147076 242147076 C T ANO7 Silent p.A410A 0.40 TCGA-K4-A6FZ-01 2 26676225 26676225 G C DRC1 Missense_Mutation p.S576T 0.16 tolerated(0.39) benign(0.001) TCGA-K4-A6FZ-01 2 28789684 28789684 C G PLB1 Missense_Mutation p.I434M 0.25 deleterious(0.01) possibly_damaging(0.619) TCGA-K4-A6FZ-01 2 28855860 28855860 C T PLB1 Missense_Mutation p.S1351L 0.20 deleterious(0) probably_damaging(0.955) TCGA-K4-A6FZ-01 2 32754759 32754759 A G BIRC6 Missense_Mutation p.T3988A 0.07 benign(0.083) TCGA-K4-A6FZ-01 2 33568000 33568000 C T LTBP1 Nonsense_Mutation p.Q1276* 0.11 TCGA-K4-A6FZ-01 2 3627712 3627712 A T RPS7 Silent p.T123T 0.24 TCGA-K4-A6FZ-01 2 40392002 40392002 C T SLC8A1 Missense_Mutation p.E721K 0.09 deleterious(0) probably_damaging(0.911) TCGA-K4-A6FZ-01 2 46808321 46808321 C T RHOQ 3'UTR 0.23 TCGA-K4-A6FZ-01 2 48033789 48033789 C T MSH6 Missense_Mutation p.R1334W 0.22 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 2 55844469 55844469 C T SMEK2 5'UTR 0.39 TCGA-K4-A6FZ-01 2 61258581 61258581 G A PEX13 Missense_Mutation p.M40I 0.18 tolerated(0.23) benign(0) TCGA-K4-A6FZ-01 2 61538745 61538745 C G USP34 Missense_Mutation p.Q1249H 0.35 deleterious(0.04) benign(0.051) TCGA-K4-A6FZ-01 2 68882225 68882225 C T PROKR1 Silent p.F233F 0.09 TCGA-K4-A6FZ-01 2 80646693 80646693 A C CTNNA2 Missense_Mutation p.Q419H 0.09 tolerated(0.16) possibly_damaging(0.796) TCGA-K4-A6FZ-01 2 85097545 85097545 C T TRABD2A Missense_Mutation p.G158E 0.23 deleterious(0) probably_damaging(0.993) TCGA-K4-A6FZ-01 2 98920260 98920260 A T VWA3B Silent p.P1172P 0.27 TCGA-K4-A6FZ-01 3 107096987 107096987 T G CCDC54 Missense_Mutation p.S185A 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-K4-A6FZ-01 3 108355512 108355512 T C DZIP3 Missense_Mutation p.V323A 0.17 tolerated(0.09) benign(0.235) TCGA-K4-A6FZ-01 3 123444796 123444796 A T MYLK Missense_Mutation p.L549Q 0.19 tolerated(0.07) probably_damaging(0.914) TCGA-K4-A6FZ-01 3 126224633 126224633 T C UROC1 Missense_Mutation p.K242E 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-K4-A6FZ-01 3 142266679 142266679 C T ATR Missense_Mutation p.R1082H 0.11 tolerated(0.3) probably_damaging(0.999) TCGA-K4-A6FZ-01 3 160960364 160960364 G C NMD3 Missense_Mutation p.E314Q 0.16 tolerated(0.13) possibly_damaging(0.649) TCGA-K4-A6FZ-01 3 161214692 161214692 A T OTOL1 Nonsense_Mutation p.K33* 0.11 TCGA-K4-A6FZ-01 3 167293806 167293808 TTA CT WDR49 Frame_Shift_Del p.N128Kfs*4 0.12 TCGA-K4-A6FZ-01 3 17052151 17052151 A C PLCL2 Missense_Mutation p.N312T 0.34 tolerated(0.17) possibly_damaging(0.643) TCGA-K4-A6FZ-01 3 188584016 188584016 C T LPP Missense_Mutation p.S480F 0.13 deleterious(0.04) benign(0.005) TCGA-K4-A6FZ-01 3 2924870 2924870 C A CNTN4 Missense_Mutation p.P232T 0.14 deleterious(0) probably_damaging(0.994) TCGA-K4-A6FZ-01 3 29781212 29781212 A G RBMS3 Missense_Mutation p.Q134R 0.29 deleterious(0.02) probably_damaging(0.964) TCGA-K4-A6FZ-01 3 39374613 39374613 A G CCR8 Missense_Mutation p.H264R 0.09 tolerated(0.54) benign(0.034) TCGA-K4-A6FZ-01 3 46062510 46062510 C G XCR1 Silent p.L310L 0.29 TCGA-K4-A6FZ-01 3 49750981 49750981 C G RNF123 Missense_Mutation p.L904V 0.22 deleterious(0) probably_damaging(0.982) TCGA-K4-A6FZ-01 3 52485797 52485797 C G TNNC1 Missense_Mutation p.E94Q 0.27 deleterious(0.03) benign(0.06) TCGA-K4-A6FZ-01 3 52486514 52486514 C A TNNC1 Nonsense_Mutation p.E14* 0.24 TCGA-K4-A6FZ-01 3 52778313 52778313 T C NEK4 Silent p.P612P 0.28 TCGA-K4-A6FZ-01 3 53820934 53820934 A T CACNA1D Silent p.G1646G 0.19 TCGA-K4-A6FZ-01 3 53835318 53835318 C G CACNA1D Silent p.L1778L 0.26 TCGA-K4-A6FZ-01 3 56052950 56052950 G A ERC2 Missense_Mutation p.A584V 0.15 tolerated(0.08) benign(0.064) TCGA-K4-A6FZ-01 3 58178401 58178401 G A DNASE1L3 3'UTR 0.13 TCGA-K4-A6FZ-01 3 63429068 63429068 A T SYNPR Intron 0.56 TCGA-K4-A6FZ-01 3 68802143 68802143 A T FAM19A4 Missense_Mutation p.C53S 0.10 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 3 69245516 69245516 T C FRMD4B Missense_Mutation p.E375G 0.15 deleterious(0) benign(0.002) TCGA-K4-A6FZ-01 3 99514904 99514904 C A COL8A1 Nonsense_Mutation p.S720* 0.12 TCGA-K4-A6FZ-01 4 103611846 103611846 G A MANBA Silent p.I252I 0.12 TCGA-K4-A6FZ-01 4 103988640 103988640 G T SLC9B2 Missense_Mutation p.P23H 0.12 tolerated(0.19) benign(0.232) TCGA-K4-A6FZ-01 4 104037810 104037810 C T CENPE Missense_Mutation p.E2456K 0.21 probably_damaging(0.916) TCGA-K4-A6FZ-01 4 110441559 110441559 A G SEC24B Missense_Mutation p.T722A 0.13 tolerated(0.28) probably_damaging(0.998) TCGA-K4-A6FZ-01 4 114682252 114682252 G C CAMK2D 5'Flank 0.20 TCGA-K4-A6FZ-01 4 118975465 118975465 G A NDST3 Missense_Mutation p.E134K 0.24 deleterious(0) probably_damaging(0.995) TCGA-K4-A6FZ-01 4 119216952 119216952 C A PRSS12 Missense_Mutation p.G633C 0.10 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 4 145633195 145633195 T C HHIP Silent p.I465I 0.16 TCGA-K4-A6FZ-01 4 147560545 147560545 G A POU4F2 Missense_Mutation p.E85K 0.14 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-K4-A6FZ-01 4 159161505 159161505 A G TMEM144 Missense_Mutation p.Y246C 0.17 deleterious(0) probably_damaging(0.996) TCGA-K4-A6FZ-01 4 167656094 167656094 T A SPOCK3 Missense_Mutation p.D430V 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-K4-A6FZ-01 4 173734855 173734855 G C GALNTL6 Missense_Mutation p.D302H 0.10 tolerated(0.41) probably_damaging(0.917) TCGA-K4-A6FZ-01 4 175598433 175598433 C T GLRA3 Silent p.T241T 0.16 TCGA-K4-A6FZ-01 4 183676435 183676435 C G TENM3 Intron 0.20 TCGA-K4-A6FZ-01 4 186329122 186329122 C T UFSP2 Silent p.L363L 0.10 TCGA-K4-A6FZ-01 4 39408737 39408737 T A KLB Missense_Mutation p.D56E 0.24 tolerated(0.65) benign(0.001) TCGA-K4-A6FZ-01 4 4411367 4411367 T C NSG1 Missense_Mutation p.V105A 0.06 tolerated(1) possibly_damaging(0.891) TCGA-K4-A6FZ-01 4 46307620 46307620 T C GABRA2 Missense_Mutation p.Q223R 0.25 tolerated(0.09) possibly_damaging(0.493) TCGA-K4-A6FZ-01 4 47676474 47676474 A T CORIN Missense_Mutation p.N431K 0.27 tolerated(0.23) benign(0.027) TCGA-K4-A6FZ-01 4 52861887 52861887 T C LRRC66 Missense_Mutation p.H434R 0.12 tolerated(0.33) benign(0.001) TCGA-K4-A6FZ-01 4 65274960 65274960 G A TECRL Missense_Mutation p.S37L 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 4 71509204 71509204 A T ENAM Missense_Mutation p.E687D 0.13 tolerated(0.17) benign(0.149) TCGA-K4-A6FZ-01 4 72629560 72629560 G T GC Nonsense_Mutation p.C208* 0.03 TCGA-K4-A6FZ-01 4 76489700 76489700 G A C4orf26 Missense_Mutation p.R163K 0.17 tolerated_low_confidence(0.4) benign(0.14) TCGA-K4-A6FZ-01 4 88356221 88356221 C T NUDT9 Missense_Mutation p.R66W 0.18 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 4 89319308 89319308 C T HERC6 Nonsense_Mutation p.Q347* 0.36 TCGA-K4-A6FZ-01 5 133481720 133481720 C T TCF7 Intron 0.43 TCGA-K4-A6FZ-01 5 140215391 140215391 T C PCDHA7 Missense_Mutation p.F475L 0.45 deleterious_low_confidence(0.04) benign(0.36) TCGA-K4-A6FZ-01 5 140227878 140227878 C A PCDHA9 5'UTR 0.30 TCGA-K4-A6FZ-01 5 140581628 140581628 A G PCDHB11 Missense_Mutation p.T761A 0.33 tolerated_low_confidence(0.1) benign(0.005) TCGA-K4-A6FZ-01 5 149754600 149754600 A T TCOF1 Silent p.A454A 0.42 TCGA-K4-A6FZ-01 5 159835419 159835419 C T SLU7 Missense_Mutation p.D246N 0.23 tolerated(0.13) benign(0.271) TCGA-K4-A6FZ-01 5 159842311 159842311 G A SLU7 5'UTR 0.10 TCGA-K4-A6FZ-01 5 161580153 161580153 A G GABRG2 Missense_Mutation p.T443A 0.23 tolerated(0.88) benign(0.015) TCGA-K4-A6FZ-01 5 162881036 162881036 A G NUDCD2 Silent p.S137S 0.14 TCGA-K4-A6FZ-01 5 169267850 169267850 T A DOCK2 Silent p.I931I 0.24 TCGA-K4-A6FZ-01 5 176318097 176318097 C G HK3 Missense_Mutation p.E119Q 0.15 tolerated(0.53) benign(0.124) TCGA-K4-A6FZ-01 5 178541275 178541275 A G ADAMTS2 Missense_Mutation p.S1077P 0.28 tolerated(0.07) possibly_damaging(0.623) TCGA-K4-A6FZ-01 5 179564637 179564637 G A RASGEF1C Missense_Mutation p.H85Y 0.24 tolerated(0.07) benign(0.035) TCGA-K4-A6FZ-01 5 43297193 43297193 T A HMGCS1 Missense_Mutation p.D217V 0.39 deleterious(0) possibly_damaging(0.874) TCGA-K4-A6FZ-01 5 5187905 5187905 T G ADAMTS16 Missense_Mutation p.L344R 0.13 deleterious(0) probably_damaging(0.997) TCGA-K4-A6FZ-01 5 64769402 64769402 A T ADAMTS6 Splice_Site p.X33_splice 0.30 TCGA-K4-A6FZ-01 5 79030530 79030530 C T CMYA5 Missense_Mutation p.S1981F 0.32 probably_damaging(0.979) TCGA-K4-A6FZ-01 5 90136742 90136742 G A GPR98 Missense_Mutation p.M5653I 0.32 benign(0) TCGA-K4-A6FZ-01 5 9042987 9042987 G T SEMA5A 3'UTR 0.25 TCGA-K4-A6FZ-01 6 108227779 108227779 G T SEC63 Silent p.I278I 0.39 TCGA-K4-A6FZ-01 6 125232178 125232178 A G RP11-510H23.1 RNA 0.37 TCGA-K4-A6FZ-01 6 15593314 15593314 T C DTNBP1 Splice_Site p.X163_splice 0.57 TCGA-K4-A6FZ-01 6 30668091 30668091 T C MDC1 3'UTR 0.48 TCGA-K4-A6FZ-01 6 36198255 36198255 G A BRPF3 Missense_Mutation p.D1163N 0.33 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 6 38697694 38697695 - T DNAH8 Intron 0.38 TCGA-K4-A6FZ-01 6 38773318 38773318 A C DNAH8 Missense_Mutation p.E815D 0.27 benign(0) TCGA-K4-A6FZ-01 6 41712464 41712464 A G PGC Missense_Mutation p.Y48H 0.26 tolerated(0.43) benign(0.001) TCGA-K4-A6FZ-01 6 52696763 52696763 C T GSTA5 Silent p.L184L 0.33 TCGA-K4-A6FZ-01 6 656068 656068 G C HUS1B 3'UTR 0.18 TCGA-K4-A6FZ-01 6 87994636 87994636 A C GJB7 5'UTR 0.28 TCGA-K4-A6FZ-01 6 90660282 90660282 T C BACH2 Missense_Mutation p.T515A 0.40 tolerated(0.11) benign(0.009) TCGA-K4-A6FZ-01 6 99283810 99283810 A C POU3F2 Missense_Mutation p.K354T 0.33 deleterious(0) probably_damaging(0.998) TCGA-K4-A6FZ-01 7 100676734 100676734 A T MUC17 Silent p.P679P 0.15 TCGA-K4-A6FZ-01 7 107434861 107434861 G T SLC26A3 Missense_Mutation p.H32N 0.13 tolerated(0.21) possibly_damaging(0.77) TCGA-K4-A6FZ-01 7 128317750 128317750 C A FAM71F2 Missense_Mutation p.F166L 0.23 tolerated(0.15) probably_damaging(0.998) TCGA-K4-A6FZ-01 7 130024374 130024374 C G CPA1 Intron 0.08 TCGA-K4-A6FZ-01 7 136700543 136700543 T A CHRM2 Missense_Mutation p.S311T 0.30 tolerated(0.41) benign(0.034) TCGA-K4-A6FZ-01 7 138391324 138391324 T A ATP6V0A4 3'UTR 0.29 TCGA-K4-A6FZ-01 7 138601955 138601955 G C KIAA1549 Nonsense_Mutation p.S806* 0.24 TCGA-K4-A6FZ-01 7 142223871 142223871 T A TRBV11-1 Missense_Mutation p.Q99L 0.17 deleterious(0) probably_damaging(0.965) TCGA-K4-A6FZ-01 7 142750249 142750249 T C OR6V1 Missense_Mutation p.V271A 0.28 tolerated(0.1) benign(0.175) TCGA-K4-A6FZ-01 7 152012391 152012392 - C KMT2C Frame_Shift_Ins p.E141Gfs*29 0.13 TCGA-K4-A6FZ-01 7 19184714 19184714 C A FERD3L Missense_Mutation p.R91L 0.33 deleterious(0) probably_damaging(0.989) TCGA-K4-A6FZ-01 7 24681365 24681365 G C MPP6 Missense_Mutation p.E50Q 0.20 tolerated(0.14) benign(0.117) TCGA-K4-A6FZ-01 7 37960321 37960321 C G EPDR1 5'UTR 0.29 TCGA-K4-A6FZ-01 7 41729463 41729463 T A INHBA Missense_Mutation p.S356C 0.36 deleterious(0) possibly_damaging(0.731) TCGA-K4-A6FZ-01 7 42949161 42949161 C T C7orf25 3'UTR 0.32 TCGA-K4-A6FZ-01 7 44804047 44804047 C T ZMIZ2 Silent p.L630L 0.31 TCGA-K4-A6FZ-01 7 5105192 5105192 G A RBAK Missense_Mutation p.R702K 0.31 tolerated_low_confidence(0.51) benign(0.001) TCGA-K4-A6FZ-01 7 71571257 71571257 A G CALN1 Silent p.V89V 0.23 TCGA-K4-A6FZ-01 7 73011604 73011604 T A MLXIPL Missense_Mutation p.K504I 0.33 deleterious(0.03) benign(0.199) TCGA-K4-A6FZ-01 7 78256482 78256482 C T MAGI2 Missense_Mutation p.M164I 0.10 tolerated(0.11) benign(0.245) TCGA-K4-A6FZ-01 7 81381465 81381465 T A HGF Missense_Mutation p.E199V 0.14 deleterious(0) probably_damaging(0.958) TCGA-K4-A6FZ-01 7 88389277 88389277 C T ZNF804B 5'UTR 0.12 TCGA-K4-A6FZ-01 7 96747179 96747179 C G ACN9 Missense_Mutation p.D48E 0.33 tolerated(1) benign(0.005) TCGA-K4-A6FZ-01 7 99463647 99463647 T A CYP3A43 3'Flank 0.20 TCGA-K4-A6FZ-01 8 100866426 100866426 G A VPS13B Silent p.A3628A 0.23 TCGA-K4-A6FZ-01 8 117778766 117778766 A C UTP23 5'UTR 0.16 TCGA-K4-A6FZ-01 8 125580731 125580731 G C MTSS1 Silent p.V169V 0.22 TCGA-K4-A6FZ-01 8 131795950 131795950 A G ADCY8 Silent p.F1085F 0.25 TCGA-K4-A6FZ-01 8 139729080 139729080 T C COL22A1 Silent p.R796R 0.30 TCGA-K4-A6FZ-01 8 139833536 139833536 T C COL22A1 Missense_Mutation p.D363G 0.23 unknown(0) TCGA-K4-A6FZ-01 8 146107407 146107407 C G ZNF250 Missense_Mutation p.E392D 0.16 deleterious(0) probably_damaging(0.925) TCGA-K4-A6FZ-01 8 26722394 26722394 C T ADRA1A Silent p.V31V 0.35 TCGA-K4-A6FZ-01 8 27457430 27457430 A T CLU Missense_Mutation p.L344Q 0.29 deleterious(0.04) probably_damaging(1) TCGA-K4-A6FZ-01 8 42176860 42176860 C G IKBKB Silent p.L479L 0.19 TCGA-K4-A6FZ-01 8 42821720 42821720 A G HOOK3 Missense_Mutation p.E295G 0.27 deleterious(0) probably_damaging(0.971) TCGA-K4-A6FZ-01 8 65493816 65493816 G A BHLHE22 Missense_Mutation p.E157K 0.36 deleterious_low_confidence(0) benign(0.346) TCGA-K4-A6FZ-01 8 70498651 70498651 G C SULF1 Missense_Mutation p.E158Q 0.25 deleterious(0.03) possibly_damaging(0.899) TCGA-K4-A6FZ-01 8 70667772 70667772 T C SLCO5A1 Missense_Mutation p.K382R 0.17 tolerated(0.21) benign(0.009) TCGA-K4-A6FZ-01 8 72973956 72973956 C T TRPA1 Missense_Mutation p.G283E 0.14 deleterious(0.02) probably_damaging(1) TCGA-K4-A6FZ-01 8 88885587 88885587 A G DCAF4L2 Missense_Mutation p.S205P 0.27 deleterious(0.02) benign(0.03) TCGA-K4-A6FZ-01 8 97274195 97274195 G T PTDSS1 5'UTR 0.42 TCGA-K4-A6FZ-01 9 104357221 104357221 G A PPP3R2 5'UTR 0.23 TCGA-K4-A6FZ-01 9 107360749 107360749 A T OR13C5 Missense_Mutation p.F316I 0.11 tolerated(0.06) benign(0.008) TCGA-K4-A6FZ-01 9 107379800 107379800 T A OR13C9 Missense_Mutation p.H229L 0.22 deleterious(0.01) benign(0.049) TCGA-K4-A6FZ-01 9 117109057 117109057 T C AKNA Missense_Mutation p.T1136A 0.27 tolerated(0.15) benign(0.044) TCGA-K4-A6FZ-01 9 12702280 12702280 A T TYRP1 Missense_Mutation p.D308V 0.16 deleterious(0) benign(0.063) TCGA-K4-A6FZ-01 9 131023520 131023520 C T GOLGA2 Missense_Mutation p.E424K 0.27 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 9 135203782 135203782 T A SETX Missense_Mutation p.E1068V 0.19 tolerated(0.22) benign(0.001) TCGA-K4-A6FZ-01 9 135523579 135523579 C T DDX31 Missense_Mutation p.E427K 0.12 tolerated(0.23) benign(0.224) TCGA-K4-A6FZ-01 9 137779161 137779161 G - FCN2 Frame_Shift_Del p.T283Lfs*26 0.21 TCGA-K4-A6FZ-01 9 26884874 26884874 C T CAAP1 Missense_Mutation p.G200E 0.23 tolerated(0.12) probably_damaging(0.925) TCGA-K4-A6FZ-01 9 27009126 27009126 G C IFT74 Missense_Mutation p.E232D 0.28 tolerated(0.12) benign(0.022) TCGA-K4-A6FZ-01 9 32634773 32634773 T C TAF1L Missense_Mutation p.K269E 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-K4-A6FZ-01 9 37740297 37740297 A G FRMPD1 Missense_Mutation p.D591G 0.26 deleterious(0) possibly_damaging(0.821) TCGA-K4-A6FZ-01 9 38577921 38577921 C T ANKRD18A Silent p.S824S 0.17 TCGA-K4-A6FZ-01 9 74319522 74319522 G C TMEM2 Silent p.V1061V 0.20 TCGA-K4-A6FZ-01 9 75387466 75387466 C G TMC1 Silent p.L293L 0.23 TCGA-K4-A6FZ-01 9 79841395 79841395 G A VPS13A Missense_Mutation p.G413E 0.20 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 X 100667415 100667415 T A HNRNPH2 Missense_Mutation p.F147I 0.10 tolerated(0.2) benign(0.036) TCGA-K4-A6FZ-01 X 102317904 102317904 T G BEX1 Missense_Mutation p.Q100P 0.11 deleterious(0) probably_damaging(1) TCGA-K4-A6FZ-01 X 102339338 102339338 T A NXF3 Nonsense_Mutation p.K95* 0.16 TCGA-K4-A6FZ-01 X 102632782 102632782 A T NGFRAP1 3'UTR 0.11 TCGA-K4-A6FZ-01 X 106186173 106186173 T C MORC4 Missense_Mutation p.K650E 0.17 tolerated(0.39) benign(0.001) TCGA-K4-A6FZ-01 X 107408248 107408248 G T COL4A6 Missense_Mutation p.P1278T 0.21 possibly_damaging(0.808) TCGA-K4-A6FZ-01 X 107977171 107977171 A T IRS4 Missense_Mutation p.S802T 0.13 tolerated(0.06) unknown(0) TCGA-K4-A6FZ-01 X 109247194 109247194 G A TMEM164 Silent p.T64T 0.14 TCGA-K4-A6FZ-01 X 119210891 119210891 C T RHOXF2B Missense_Mutation p.E148K 0.13 deleterious(0.01) probably_damaging(1) TCGA-K4-A6FZ-01 X 129147288 129147288 A G BCORL1 Silent p.G180G 0.11 TCGA-K4-A6FZ-01 X 130678918 130678918 C A OR13H1 Missense_Mutation p.L291M 0.27 deleterious(0) probably_damaging(0.996) TCGA-K4-A6FZ-01 X 132160659 132160659 A G USP26 Silent p.C530C 0.12 TCGA-K4-A6FZ-01 X 147733616 147733616 T C AFF2 Silent p.F48F 0.11 TCGA-K4-A6FZ-01 X 149013297 149013297 A T MAGEA8 Missense_Mutation p.D84V 0.10 deleterious(0.01) benign(0.089) TCGA-K4-A6FZ-01 X 149642008 149642008 T C MAMLD1 Intron 0.15 TCGA-K4-A6FZ-01 X 152481998 152481998 G T MAGEA1 3'UTR 0.16 TCGA-K4-A6FZ-01 X 153199891 153199891 A T NAA10 Missense_Mutation p.L20H 0.12 tolerated(0.1) possibly_damaging(0.644) TCGA-K4-A6FZ-01 X 22291226 22291226 G T ZNF645 Missense_Mutation p.D40Y 0.30 deleterious(0) possibly_damaging(0.746) TCGA-K4-A6FZ-01 X 3242731 3242731 A G MXRA5 Missense_Mutation p.L332S 0.27 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 X 44703920 44703920 A T DUSP21 Missense_Mutation p.E181V 0.29 deleterious(0.04) benign(0.338) TCGA-K4-A6FZ-01 X 47269690 47269690 G A ZNF157 Missense_Mutation p.E30K 0.41 tolerated(1) possibly_damaging(0.688) TCGA-K4-A6FZ-01 X 48208987 48208987 G A SSX3 Intron 0.14 TCGA-K4-A6FZ-01 X 50053611 50053611 T A CCNB3 Silent p.A814A 0.09 TCGA-K4-A6FZ-01 X 63406090 63406090 T C AMER1 3'UTR 0.20 TCGA-K4-A6FZ-01 X 63410907 63410907 G A AMER1 Missense_Mutation p.P754S 0.23 tolerated(0.11) benign(0.099) TCGA-K4-A6FZ-01 X 64722511 64722511 G C ZC3H12B Missense_Mutation p.E645Q 0.21 deleterious(0) benign(0.429) TCGA-K4-A6FZ-01 X 66931403 66931403 A T AR Missense_Mutation p.E682V 0.11 deleterious(0) probably_damaging(0.999) TCGA-K4-A6FZ-01 X 67652755 67652755 G C OPHN1 Missense_Mutation p.I36M 0.27 deleterious(0) benign(0.01) TCGA-K4-A6FZ-01 X 68749658 68749658 C T FAM155B Silent p.L426L 0.10 TCGA-K4-A6FZ-01 X 70824256 70824256 G A ACRC Missense_Mutation p.E377K 0.14 unknown(0) TCGA-K4-A6FZ-01 X 71427164 71427164 A T ERCC6L Missense_Mutation p.S485T 0.14 deleterious(0) probably_damaging(0.91) TCGA-K4-A6FZ-01 X 71800853 71800853 C T PHKA1 Silent p.%3D 0.46 TCGA-K4-A6FZ-01 X 73812516 73812516 T A RLIM Nonsense_Mutation p.R212* 0.13 TCGA-K4-A6FZ-01 X 73812517 73812517 T A RLIM Silent p.A211A 0.13 TCGA-K4-A6FZ-01 X 74519605 74519605 C G UPRT Missense_Mutation p.R200G 0.15 deleterious(0) probably_damaging(0.953) TCGA-K4-A6FZ-01 X 79699185 79699185 C T FAM46D Missense_Mutation p.R383C 0.14 deleterious_low_confidence(0.01) benign(0.443) TCGA-K4-A6FZ-01 X 79939516 79939516 T - BRWD3 Frame_Shift_Del p.K1409Sfs*7 0.16 TCGA-K4-A6FZ-01 X 90691592 90691592 A C PABPC5 Missense_Mutation p.Q339P 0.24 deleterious(0.01) possibly_damaging(0.868) TCGA-K4-A6MB-01 10 102747984 102747984 G A C10orf2 Missense_Mutation p.R6Q 0.29 tolerated_low_confidence(0.2) benign(0.011) TCGA-K4-A6MB-01 10 103991526 103991526 G A PITX3 Missense_Mutation p.S47L 0.25 deleterious(0.04) benign(0.001) TCGA-K4-A6MB-01 10 105758909 105758909 C T SLK Missense_Mutation p.S207F 0.38 tolerated(0.1) probably_damaging(1) TCGA-K4-A6MB-01 10 121285576 121285576 C T RGS10 Missense_Mutation p.E75K 0.47 deleterious(0) possibly_damaging(0.783) TCGA-K4-A6MB-01 10 12209770 12209770 G C NUDT5 Silent p.V197V 0.28 TCGA-K4-A6MB-01 10 135093396 135093396 G A TUBGCP2 Silent p.F889F 0.75 TCGA-K4-A6MB-01 10 135164890 135164890 T C PRAP1 Silent p.P27P 0.40 TCGA-K4-A6MB-01 10 14974888 14974888 G A DCLRE1C Missense_Mutation p.R249C 0.21 deleterious(0) probably_damaging(0.973) TCGA-K4-A6MB-01 10 23622056 23622056 G A C10orf67 Nonsense_Mutation p.Q89* 0.60 TCGA-K4-A6MB-01 10 27702331 27702331 G A PTCHD3 Silent p.I283I 0.11 TCGA-K4-A6MB-01 10 53459240 53459240 G A CSTF2T Missense_Mutation p.P24S 0.61 deleterious(0.04) probably_damaging(0.985) TCGA-K4-A6MB-01 10 61830047 61830047 G A ANK3 Missense_Mutation p.P3531L 0.21 probably_damaging(0.994) TCGA-K4-A6MB-01 10 64960285 64960285 C T JMJD1C Missense_Mutation p.E1743K 0.19 tolerated(0.26) probably_damaging(0.998) TCGA-K4-A6MB-01 10 72358421 72358421 G A PRF1 Silent p.S352S 0.31 TCGA-K4-A6MB-01 10 72633171 72633171 C T SGPL1 Nonsense_Mutation p.Q375* 0.24 TCGA-K4-A6MB-01 10 75527625 75527625 C T SEC24C Nonsense_Mutation p.Q681* 0.26 TCGA-K4-A6MB-01 10 75527713 75527713 C G SEC24C Missense_Mutation p.S710C 0.43 deleterious(0) probably_damaging(0.963) TCGA-K4-A6MB-01 10 75527728 75527728 T C SEC24C Missense_Mutation p.L715P 0.33 tolerated(0.07) possibly_damaging(0.816) TCGA-K4-A6MB-01 10 75527763 75527763 C T SEC24C Nonsense_Mutation p.Q727* 0.23 TCGA-K4-A6MB-01 10 75528902 75528902 C G SEC24C Missense_Mutation p.L806V 0.20 deleterious(0.03) benign(0.039) TCGA-K4-A6MB-01 10 76602978 76602978 G A KAT6B Silent p.P121P 0.52 TCGA-K4-A6MB-01 10 8106047 8106047 C T GATA3 Silent p.L290L 0.23 TCGA-K4-A6MB-01 10 98824581 98824581 G C SLIT1 Missense_Mutation p.L180V 0.20 deleterious(0.01) possibly_damaging(0.765) TCGA-K4-A6MB-01 10 99003770 99003770 A T ARHGAP19 Silent p.V380V 0.57 TCGA-K4-A6MB-01 10 99003773 99003773 G A ARHGAP19 Silent p.H379H 0.59 TCGA-K4-A6MB-01 10 99130304 99130304 G A RRP12 Missense_Mutation p.T866I 0.25 tolerated(0.08) benign(0.235) TCGA-K4-A6MB-01 11 105769096 105769096 G A GRIA4 Missense_Mutation p.M276I 0.54 tolerated(0.63) benign(0.011) TCGA-K4-A6MB-01 11 107833121 107833121 A G RAB39A 3'UTR 0.31 TCGA-K4-A6MB-01 11 108198472 108198472 C A ATM Missense_Mutation p.T2359N 0.26 tolerated(0.79) benign(0.002) TCGA-K4-A6MB-01 11 113281287 113281287 C T DRD2 3'UTR 0.56 TCGA-K4-A6MB-01 11 114315274 114315274 C G REXO2 Silent p.T107T 0.19 TCGA-K4-A6MB-01 11 118344537 118344537 C T KMT2A Missense_Mutation p.S888L 0.61 probably_damaging(0.942) TCGA-K4-A6MB-01 11 119216562 119216562 G A MFRP Silent p.T116T 0.62 TCGA-K4-A6MB-01 11 125765330 125765330 G A PUS3 Nonsense_Mutation p.Q245* 0.26 TCGA-K4-A6MB-01 11 126279195 126279195 C T ST3GAL4 Silent p.L220L 0.31 TCGA-K4-A6MB-01 11 129727291 129727291 C T TMEM45B Silent p.C218C 0.27 TCGA-K4-A6MB-01 11 134018532 134018532 G A JAM3 Missense_Mutation p.R268K 0.21 tolerated(0.73) benign(0.006) TCGA-K4-A6MB-01 11 26587129 26587129 C G MUC15 Missense_Mutation p.A120P 0.66 deleterious_low_confidence(0.03) benign(0.108) TCGA-K4-A6MB-01 11 44105036 44105036 G A ACCS Silent p.K439K 0.78 TCGA-K4-A6MB-01 11 45955620 45955620 C T PHF21A Missense_Mutation p.D648N 0.25 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-K4-A6MB-01 11 47745674 47745674 C A FNBP4 Missense_Mutation p.K790N 0.29 deleterious(0) probably_damaging(0.999) TCGA-K4-A6MB-01 11 55890226 55890226 C T OR8H3 Silent p.I126I 0.40 TCGA-K4-A6MB-01 11 60642417 60642417 C G ZP1 Missense_Mutation p.F528L 0.26 tolerated(0.23) benign(0.034) TCGA-K4-A6MB-01 11 60642428 60642428 C T ZP1 Missense_Mutation p.S532F 0.32 deleterious(0) probably_damaging(0.998) TCGA-K4-A6MB-01 11 60704401 60704401 G A TMEM132A 3'UTR 0.38 TCGA-K4-A6MB-01 11 62040542 62040542 C T SCGB2A2 3'UTR 0.42 TCGA-K4-A6MB-01 11 62622490 62622490 C A SLC3A2 5'Flank 0.17 TCGA-K4-A6MB-01 11 64428387 64428387 C T NRXN2 Missense_Mutation p.E675K 0.25 tolerated(0.07) benign(0.013) TCGA-K4-A6MB-01 11 64519937 64519937 G A PYGM Missense_Mutation p.R520C 0.53 deleterious(0) possibly_damaging(0.587) TCGA-K4-A6MB-01 11 64695868 64695868 C T PPP2R5B Silent p.I231I 0.15 TCGA-K4-A6MB-01 11 64802362 64802362 A G SNX15 Silent p.A100A 0.52 TCGA-K4-A6MB-01 11 65147614 65147614 C G SLC25A45 Missense_Mutation p.D24H 0.19 deleterious(0) probably_damaging(0.998) TCGA-K4-A6MB-01 11 65480937 65480937 C T KAT5 Missense_Mutation p.S168F 0.62 deleterious(0.02) benign(0.007) TCGA-K4-A6MB-01 11 65480946 65480946 C T KAT5 Missense_Mutation p.S171F 0.63 deleterious(0.05) benign(0.146) TCGA-K4-A6MB-01 11 65713282 65713282 C G TSGA10IP RNA 0.49 TCGA-K4-A6MB-01 11 65714412 65714412 C T TSGA10IP RNA 0.51 TCGA-K4-A6MB-01 11 66033221 66033221 G A KLC2 Missense_Mutation p.R477H 0.07 deleterious(0.01) probably_damaging(0.958) TCGA-K4-A6MB-01 11 66472142 66472142 C G SPTBN2 Missense_Mutation p.E869Q 0.35 tolerated(0.17) benign(0.102) TCGA-K4-A6MB-01 11 67372556 67372556 C G C11orf72 5'UTR 0.58 TCGA-K4-A6MB-01 11 71941240 71941240 G C INPPL1 Missense_Mutation p.E339Q 0.38 deleterious(0.01) probably_damaging(0.925) TCGA-K4-A6MB-01 11 763351 763351 G A TALDO1 Missense_Mutation p.E157K 0.68 deleterious(0.01) probably_damaging(0.985) TCGA-K4-A6MB-01 11 83544746 83544746 C G DLG2 Missense_Mutation p.D545H 0.18 deleterious(0) probably_damaging(0.999) TCGA-K4-A6MB-01 12 110341781 110341781 G C TCHP Missense_Mutation p.K76N 0.44 deleterious(0.02) benign(0.209) TCGA-K4-A6MB-01 12 112630478 112630478 C A HECTD4 Missense_Mutation p.A2914S 0.50 benign(0.007) TCGA-K4-A6MB-01 12 113664754 113664754 G C TPCN1 Missense_Mutation p.E105Q 0.44 tolerated(0.07) benign(0.006) TCGA-K4-A6MB-01 12 124130058 124130058 C A GTF2H3 Missense_Mutation p.F50L 0.22 tolerated(0.29) benign(0.002) TCGA-K4-A6MB-01 12 124403231 124403231 G C DNAH10 Missense_Mutation p.E3629D 0.23 benign(0.019) TCGA-K4-A6MB-01 12 131285986 131285986 C T STX2 Missense_Mutation p.G171R 0.54 deleterious(0) probably_damaging(0.963) TCGA-K4-A6MB-01 12 133238238 133238238 C T POLE Silent p.L913L 0.24 TCGA-K4-A6MB-01 12 26714878 26714879 - T ITPR2 Frame_Shift_Ins p.N1546Kfs*15 0.33 TCGA-K4-A6MB-01 12 2968224 2968224 C A FOXM1 Missense_Mutation p.W662C 0.23 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 12 31821028 31821028 T C METTL20 3'UTR 0.38 TCGA-K4-A6MB-01 12 43944794 43944794 G A ADAMTS20 Missense_Mutation p.S124L 0.56 tolerated(0.12) benign(0.012) TCGA-K4-A6MB-01 12 4881816 4881816 C T GALNT8 3'UTR 0.56 TCGA-K4-A6MB-01 12 49425704 49425704 G A KMT2D Nonsense_Mutation p.Q4262* 0.13 TCGA-K4-A6MB-01 12 50575725 50575725 G A LIMA1 Silent p.I413I 0.32 TCGA-K4-A6MB-01 12 52695682 52695682 C G KRT86 5'UTR 0.27 TCGA-K4-A6MB-01 12 53825289 53825289 C T AMHR2 3'UTR 0.66 TCGA-K4-A6MB-01 12 57432257 57432257 A T MYO1A Missense_Mutation p.F567I 0.58 deleterious(0) probably_damaging(0.919) TCGA-K4-A6MB-01 12 57965107 57965107 G A KIF5A Missense_Mutation p.D433N 0.32 deleterious(0) possibly_damaging(0.844) TCGA-K4-A6MB-01 12 6935872 6935872 C G GPR162 Missense_Mutation p.R424G 0.20 tolerated(0.18) benign(0.401) TCGA-K4-A6MB-01 12 8757469 8757469 G A AICDA Silent p.F159F 0.56 TCGA-K4-A6MB-01 12 988982 988982 C T WNK1 Silent p.L873L 0.31 TCGA-K4-A6MB-01 13 100622424 100622424 G A ZIC5 Silent p.F502F 0.37 TCGA-K4-A6MB-01 13 100953732 100953732 G C PCCA Missense_Mutation p.E362Q 0.24 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 13 111932989 111932989 C T ARHGEF7 Missense_Mutation p.P585S 0.24 tolerated(0.32) benign(0.005) TCGA-K4-A6MB-01 13 31495943 31495943 G C MEDAG Missense_Mutation p.R249S 0.59 tolerated(0.2) probably_damaging(0.978) TCGA-K4-A6MB-01 13 41941684 41941684 G A NAA16 Missense_Mutation p.R550K 0.12 tolerated(0.94) benign(0.005) TCGA-K4-A6MB-01 13 96361567 96361567 T G DNAJC3 Missense_Mutation p.L57V 0.39 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 14 102552143 102552143 C G HSP90AA1 Missense_Mutation p.A283P 0.70 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-K4-A6MB-01 14 102552188 102552188 C A HSP90AA1 Nonsense_Mutation p.E268* 0.69 TCGA-K4-A6MB-01 14 23890220 23890220 C G MYH7 Missense_Mutation p.E1095Q 0.83 deleterious(0.01) probably_damaging(0.989) TCGA-K4-A6MB-01 14 24807160 24807160 C G RIPK3 Missense_Mutation p.E251Q 0.82 tolerated(0.12) possibly_damaging(0.822) TCGA-K4-A6MB-01 14 31597995 31597995 T C HECTD1 Missense_Mutation p.M1528V 0.26 tolerated(0.36) benign(0.048) TCGA-K4-A6MB-01 14 31785008 31785008 C G HEATR5A Missense_Mutation p.E1396Q 0.76 deleterious(0) possibly_damaging(0.702) TCGA-K4-A6MB-01 14 37132243 37132243 C T PAX9 Missense_Mutation p.S49L 0.84 deleterious(0) probably_damaging(0.996) TCGA-K4-A6MB-01 14 53513515 53513515 C T DDHD1 Missense_Mutation p.D892N 0.66 tolerated_low_confidence(0.71) benign(0.002) TCGA-K4-A6MB-01 14 88652241 88652241 G A KCNK10 Missense_Mutation p.R424W 0.71 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-K4-A6MB-01 14 92249442 92249442 C G TC2N 3'UTR 0.78 TCGA-K4-A6MB-01 14 93730169 93730169 C G BTBD7 Missense_Mutation p.D445H 0.84 tolerated(0.08) possibly_damaging(0.69) TCGA-K4-A6MB-01 14 95905975 95905975 C T SYNE3 Silent p.L740L 0.77 TCGA-K4-A6MB-01 14 95999806 95999806 C T GLRX5 5'Flank 0.80 TCGA-K4-A6MB-01 15 20588568 20588568 C T HERC2P3 RNA 0.38 TCGA-K4-A6MB-01 15 28420727 28420727 C G HERC2 Silent p.L3254L 0.28 TCGA-K4-A6MB-01 15 33955875 33955875 G A RYR3 Silent p.L1852L 0.75 TCGA-K4-A6MB-01 15 51857288 51857288 G C DMXL2 Missense_Mutation p.Q121E 0.64 tolerated(1) possibly_damaging(0.599) TCGA-K4-A6MB-01 15 59323899 59323899 C G RNF111 Nonsense_Mutation p.S293* 0.33 TCGA-K4-A6MB-01 15 59348035 59348035 G A RNF111 Missense_Mutation p.D388N 0.20 deleterious(0.02) possibly_damaging(0.894) TCGA-K4-A6MB-01 15 62208206 62208206 G A VPS13C Missense_Mutation p.H2691Y 0.36 tolerated(1) benign(0.003) TCGA-K4-A6MB-01 15 65551670 65551670 T A PARP16 3'UTR 0.53 TCGA-K4-A6MB-01 15 85666302 85666302 C T PDE8A Missense_Mutation p.R655W 0.62 deleterious(0) probably_damaging(0.989) TCGA-K4-A6MB-01 16 10862862 10862862 G C TVP23A 3'UTR 0.27 TCGA-K4-A6MB-01 16 11966968 11966968 G A GSPT1 3'UTR 0.27 TCGA-K4-A6MB-01 16 14029110 14029110 G A ERCC4 Missense_Mutation p.E441K 0.55 tolerated(0.69) benign(0.044) TCGA-K4-A6MB-01 16 1720696 1720696 G T CRAMP1L Missense_Mutation p.K1177N 0.52 deleterious(0) probably_damaging(0.962) TCGA-K4-A6MB-01 16 1891903 1891903 C T MEIOB Missense_Mutation p.D318N 0.58 deleterious(0.04) benign(0.037) TCGA-K4-A6MB-01 16 202996 202996 C T HBZ Silent p.L30L 0.10 TCGA-K4-A6MB-01 16 2088042 2088042 C T SLC9A3R2 3'UTR 0.50 TCGA-K4-A6MB-01 16 21964740 21964740 G C UQCRC2 5'UTR 0.32 TCGA-K4-A6MB-01 16 2258555 2258562 CCTCCCGC - MLST8 Frame_Shift_Del p.S268Wfs*52 0.19 TCGA-K4-A6MB-01 16 22826011 22826011 C T HS3ST2 Missense_Mutation p.S27L 0.33 tolerated(0.4) benign(0.003) TCGA-K4-A6MB-01 16 23415145 23415145 G C COG7 Nonsense_Mutation p.S558* 0.55 TCGA-K4-A6MB-01 16 23570965 23570965 G A UBFD1 Missense_Mutation p.E178K 0.12 tolerated(0.23) benign(0.024) TCGA-K4-A6MB-01 16 27763065 27763065 C G KIAA0556 Missense_Mutation p.I1124M 0.36 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 16 28922244 28922244 C G RABEP2 Missense_Mutation p.V352L 0.19 tolerated(0.36) benign(0.01) TCGA-K4-A6MB-01 16 30038107 30038107 G A FAM57B Silent p.I89I 0.16 TCGA-K4-A6MB-01 16 30080144 30080156 GATGGGCTGTCTG TCTA ALDOA In_Frame_Del p.D183_E187delinsSK 0.12 TCGA-K4-A6MB-01 16 30080156 30080156 G A ALDOA Missense_Mutation p.E187K 0.11 tolerated(0.14) benign(0.042) TCGA-K4-A6MB-01 16 46642219 46642219 G T SHCBP1 Silent p.R227R 0.14 TCGA-K4-A6MB-01 16 46836867 46836867 G C C16orf87 Silent p.L154L 0.30 TCGA-K4-A6MB-01 16 46836885 46836885 G A C16orf87 Silent p.I148I 0.38 TCGA-K4-A6MB-01 16 49313318 49313318 G C CBLN1 Silent p.L193L 0.25 TCGA-K4-A6MB-01 16 57685530 57685530 C T GPR56 Silent p.F161F 0.43 TCGA-K4-A6MB-01 16 64981652 64981652 C A CDH11 Missense_Mutation p.G749C 0.36 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 16 66670431 66670431 C T CMTM4 Silent p.P80P 0.37 TCGA-K4-A6MB-01 16 68269602 68269602 C G ESRP2 Missense_Mutation p.E88Q 0.41 tolerated(0.08) benign(0.118) TCGA-K4-A6MB-01 16 71782178 71782178 G C AP1G1 Missense_Mutation p.S537C 0.18 deleterious(0.03) possibly_damaging(0.524) TCGA-K4-A6MB-01 16 74419282 74419282 G C NPIPB15 Missense_Mutation p.D98H 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-K4-A6MB-01 17 19015739 19015739 C T SNORD3D RNA 0.20 TCGA-K4-A6MB-01 17 27282970 27282970 G C SEZ6 3'UTR 0.17 TCGA-K4-A6MB-01 17 29645572 29645572 G C EVI2A Missense_Mutation p.L177V 0.35 deleterious(0.01) probably_damaging(0.956) TCGA-K4-A6MB-01 17 34105856 34105856 G A MMP28 3'UTR 0.28 TCGA-K4-A6MB-01 17 34432714 34432714 G C CCL4 3'UTR 0.25 TCGA-K4-A6MB-01 17 34858945 34858945 C G MYO19 Missense_Mutation p.G691A 0.45 tolerated(0.37) benign(0.156) TCGA-K4-A6MB-01 17 38637000 38637000 C A TNS4 Missense_Mutation p.A565S 0.21 tolerated(0.82) benign(0.017) TCGA-K4-A6MB-01 17 38975102 38975102 G C KRT10 Missense_Mutation p.S562C 0.59 deleterious_low_confidence(0.01) unknown(0) TCGA-K4-A6MB-01 17 39394298 39394298 G A KRTAP9-8 5'UTR 0.15 TCGA-K4-A6MB-01 17 42992455 42992455 T A GFAP Missense_Mutation p.S134C 0.26 deleterious(0.01) benign(0.019) TCGA-K4-A6MB-01 17 56385246 56385246 C T BZRAP1 Silent p.Q1596Q 0.16 TCGA-K4-A6MB-01 17 57326144 57326144 G C GDPD1 Missense_Mutation p.R122T 0.13 tolerated(0.53) benign(0.026) TCGA-K4-A6MB-01 17 58227431 58227431 G A CA4 Silent p.A12A 0.60 TCGA-K4-A6MB-01 17 60033093 60033093 G A MED13 Silent p.L1910L 0.22 TCGA-K4-A6MB-01 17 60038310 60038310 G C MED13 Missense_Mutation p.Q1800E 0.23 deleterious(0.02) possibly_damaging(0.894) TCGA-K4-A6MB-01 17 60039055 60039055 G A MED13 Missense_Mutation p.S1717L 0.20 deleterious(0) probably_damaging(0.979) TCGA-K4-A6MB-01 17 62290455 62290455 C T TEX2 Missense_Mutation p.E375K 0.22 tolerated(0.7) benign(0.087) TCGA-K4-A6MB-01 17 65103605 65103605 T C HELZ Missense_Mutation p.I1641V 0.72 tolerated_low_confidence(0.45) unknown(0) TCGA-K4-A6MB-01 17 66366605 66366605 C T ARSG Nonsense_Mutation p.Q308* 0.71 TCGA-K4-A6MB-01 17 72859208 72859208 G A FDXR Silent p.L488L 0.11 TCGA-K4-A6MB-01 17 72945380 72945380 G C OTOP3 Missense_Mutation p.E554Q 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-K4-A6MB-01 17 72945415 72945415 G C OTOP3 Missense_Mutation p.Q565H 0.11 tolerated(0.08) benign(0.004) TCGA-K4-A6MB-01 17 73897060 73897060 C T MRPL38 Intron 0.13 TCGA-K4-A6MB-01 17 73898165 73898165 C T MRPL38 Silent p.R106R 0.35 TCGA-K4-A6MB-01 17 74470535 74470535 G A RHBDF2 Nonsense_Mutation p.R491* 0.72 TCGA-K4-A6MB-01 17 74740463 74740463 C G MFSD11 Missense_Mutation p.L186V 0.31 tolerated(0.27) benign(0.034) TCGA-K4-A6MB-01 17 75208187 75208187 G A SEC14L1 Silent p.G589G 0.24 TCGA-K4-A6MB-01 17 7574021 7574021 C A TP53 Nonsense_Mutation p.E336* 0.76 TCGA-K4-A6MB-01 17 76425363 76425363 G T DNAH17 Missense_Mutation p.R4076S 0.73 probably_damaging(0.995) TCGA-K4-A6MB-01 17 76525721 76525721 G A DNAH17 Missense_Mutation p.L1114F 0.17 benign(0.248) TCGA-K4-A6MB-01 17 7695372 7695372 C T DNAH2 Silent p.G2346G 0.78 TCGA-K4-A6MB-01 17 77042772 77042772 G C C1QTNF1 Missense_Mutation p.L97F 0.17 deleterious(0.01) possibly_damaging(0.68) TCGA-K4-A6MB-01 17 80363250 80363250 G A OGFOD3 Silent p.F165F 0.10 TCGA-K4-A6MB-01 17 8065084 8065084 C T VAMP2 Missense_Mutation p.V42M 0.62 deleterious(0) probably_damaging(0.999) TCGA-K4-A6MB-01 18 19444545 19444545 G A MIB1 Missense_Mutation p.G980E 0.17 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 18 20573073 20573073 C T RBBP8 Missense_Mutation p.S428F 0.53 deleterious(0.05) benign(0.019) TCGA-K4-A6MB-01 18 28992885 28992885 C G DSG4 Missense_Mutation p.S836C 0.28 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 18 59942679 59942679 G A KIAA1468 Silent p.V980V 0.52 TCGA-K4-A6MB-01 18 76753365 76753365 C A SALL3 Silent p.S458S 0.33 TCGA-K4-A6MB-01 19 10222300 10222300 G A P2RY11 5'UTR 0.52 TCGA-K4-A6MB-01 19 10753966 10753966 G T SLC44A2 Nonsense_Mutation p.E676* 0.17 TCGA-K4-A6MB-01 19 11216117 11216117 G C LDLR Missense_Mutation p.E179Q 0.59 deleterious(0.01) probably_damaging(1) TCGA-K4-A6MB-01 19 11977127 11977127 C G ZNF439 Missense_Mutation p.F52L 0.53 tolerated(0.24) probably_damaging(0.995) TCGA-K4-A6MB-01 19 12541736 12541736 C G ZNF443 Missense_Mutation p.G417A 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-K4-A6MB-01 19 13029073 13029073 C A SYCE2 Nonsense_Mutation p.E32* 0.37 TCGA-K4-A6MB-01 19 16974540 16974540 C T SIN3B Missense_Mutation p.T471M 0.40 deleterious(0) possibly_damaging(0.886) TCGA-K4-A6MB-01 19 36964275 36964275 C T ZNF566 Missense_Mutation p.R32K 0.22 tolerated(0.25) probably_damaging(0.995) TCGA-K4-A6MB-01 19 41825733 41825733 G C CCDC97 Missense_Mutation p.E253Q 0.40 deleterious(0.02) possibly_damaging(0.861) TCGA-K4-A6MB-01 19 43967302 43967302 C T LYPD3 Missense_Mutation p.D174N 0.45 deleterious(0.02) possibly_damaging(0.905) TCGA-K4-A6MB-01 19 44590904 44590904 G C ZNF284 Missense_Mutation p.E425Q 0.21 deleterious(0.01) benign(0.04) TCGA-K4-A6MB-01 19 45259496 45259496 C T BCL3 Missense_Mutation p.H140Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-K4-A6MB-01 19 4556051 4556051 C A SEMA6B Silent p.T140T 0.53 TCGA-K4-A6MB-01 19 46303729 46303729 C T RSPH6A Missense_Mutation p.G631R 0.56 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 19 47883073 47883073 G T DHX34 Missense_Mutation p.R938L 0.58 tolerated(0.37) benign(0.166) TCGA-K4-A6MB-01 19 47960819 47960819 G A SLC8A2 Silent p.F236F 0.15 TCGA-K4-A6MB-01 19 4817081 4817081 C T TICAM1 Missense_Mutation p.G437R 0.58 deleterious(0.01) possibly_damaging(0.831) TCGA-K4-A6MB-01 19 48866599 48866599 G A TMEM143 Silent p.R71R 0.56 TCGA-K4-A6MB-01 19 49362886 49362886 C T PLEKHA4 Missense_Mutation p.G178S 0.46 tolerated(0.11) probably_damaging(0.979) TCGA-K4-A6MB-01 19 50398435 50398435 G A IL4I1 Silent p.V107V 0.34 TCGA-K4-A6MB-01 19 52496424 52496424 C T ZNF615 Silent p.K646K 0.51 TCGA-K4-A6MB-01 19 52618466 52618466 G T ZNF616 Missense_Mutation p.H651N 0.52 deleterious(0) probably_damaging(0.999) TCGA-K4-A6MB-01 19 52857575 52857575 C G ZNF610 Missense_Mutation p.Q88E 0.67 tolerated(1) benign(0) TCGA-K4-A6MB-01 19 53304815 53304815 G A ZNF28 Missense_Mutation p.H95Y 0.21 tolerated(0.13) benign(0.335) TCGA-K4-A6MB-01 19 54942066 54942066 C T TTYH1 Nonsense_Mutation p.Q339* 0.27 TCGA-K4-A6MB-01 19 55386818 55386818 G A FCAR Missense_Mutation p.E23K 0.10 tolerated(0.18) benign(0.012) TCGA-K4-A6MB-01 19 55690344 55690344 G T SYT5 Silent p.I22I 0.64 TCGA-K4-A6MB-01 19 57640569 57640569 G C USP29 Missense_Mutation p.D176H 0.19 tolerated(0.13) benign(0.319) TCGA-K4-A6MB-01 19 8326714 8326714 A T CERS4 Missense_Mutation p.M331L 0.19 tolerated(1) benign(0) TCGA-K4-A6MB-01 1 109897036 109897036 T G SORT1 Missense_Mutation p.M221L 0.29 tolerated(0.84) benign(0) TCGA-K4-A6MB-01 1 110210659 110210659 C G GSTM2 5'Flank 0.28 TCGA-K4-A6MB-01 1 11140941 11140958 TCATCCGTGAAGATAGGT - EXOSC10 In_Frame_Del p.P484_E489del 0.09 TCGA-K4-A6MB-01 1 112020820 112020820 T C C1orf162 3'UTR 0.44 TCGA-K4-A6MB-01 1 113241400 113241400 A G MOV10 Missense_Mutation p.K858E 0.32 tolerated(0.11) benign(0.103) TCGA-K4-A6MB-01 1 12460348 12460348 G T VPS13D Silent p.V3915V 0.27 TCGA-K4-A6MB-01 1 145558885 145558885 C G ANKRD35 Missense_Mutation p.I168M 0.04 deleterious(0) benign(0.081) TCGA-K4-A6MB-01 1 150256286 150256286 G C C1orf51 Missense_Mutation p.E146D 0.26 tolerated(0.4) possibly_damaging(0.705) TCGA-K4-A6MB-01 1 152190620 152190620 C - HRNR Frame_Shift_Del p.G1162Afs*359 0.09 TCGA-K4-A6MB-01 1 152281003 152281003 T C FLG Missense_Mutation p.D2120G 0.28 possibly_damaging(0.539) TCGA-K4-A6MB-01 1 153598931 153598931 C A S100A13 Silent p.L6L 0.21 TCGA-K4-A6MB-01 1 153782755 153782755 G A GATAD2B Silent p.I560I 0.24 TCGA-K4-A6MB-01 1 155220937 155220937 G C FAM189B Missense_Mutation p.Q305E 0.45 deleterious(0.01) possibly_damaging(0.814) TCGA-K4-A6MB-01 1 155629567 155629567 G A YY1AP1 Silent p.L850L 0.22 TCGA-K4-A6MB-01 1 155790434 155790434 G T GON4L Missense_Mutation p.T326K 0.17 deleterious(0) possibly_damaging(0.607) TCGA-K4-A6MB-01 1 157068627 157068627 G C ETV3L Missense_Mutation p.F119L 0.16 deleterious(0) probably_damaging(0.992) TCGA-K4-A6MB-01 1 158908324 158908324 G C PYHIN1 Missense_Mutation p.G135R 0.68 tolerated(0.45) possibly_damaging(0.798) TCGA-K4-A6MB-01 1 162824967 162824967 G C C1orf110 Missense_Mutation p.S166C 0.03 tolerated(0.08) benign(0.127) TCGA-K4-A6MB-01 1 16893787 16893787 C G NBPF1 Missense_Mutation p.R909T 0.04 tolerated(0.05) benign(0.434) TCGA-K4-A6MB-01 1 17296403 17296403 G A CROCC Missense_Mutation p.E1809K 0.27 possibly_damaging(0.502) TCGA-K4-A6MB-01 1 17405704 17405704 G C PADI2 Intron 0.16 TCGA-K4-A6MB-01 1 175299342 175299342 G A TNR Nonsense_Mutation p.Q1221* 0.21 TCGA-K4-A6MB-01 1 179966062 179966062 C T CEP350 Missense_Mutation p.S257F 0.26 probably_damaging(0.999) TCGA-K4-A6MB-01 1 181708285 181708285 G A CACNA1E Missense_Mutation p.M1205I 0.18 tolerated(0.11) benign(0.284) TCGA-K4-A6MB-01 1 197898167 197898167 G A LHX9 Silent p.R324R 0.24 TCGA-K4-A6MB-01 1 201046204 201046204 G A CACNA1S Silent p.R557R 0.89 TCGA-K4-A6MB-01 1 215749295 215749295 C G KCTD3 Missense_Mutation p.R79G 0.32 deleterious(0) probably_damaging(0.999) TCGA-K4-A6MB-01 1 224563589 224563589 C G CNIH4 3'UTR 0.48 TCGA-K4-A6MB-01 1 228524792 228524792 A G OBSCN Missense_Mutation p.Q6499R 0.86 probably_damaging(0.956) TCGA-K4-A6MB-01 1 240071577 240071577 G A CHRM3 Missense_Mutation p.E276K 0.25 tolerated(0.17) benign(0.065) TCGA-K4-A6MB-01 1 26737974 26737974 C T LIN28A Silent p.I43I 0.33 TCGA-K4-A6MB-01 1 39800589 39800589 G C MACF1 Intron 0.10 TCGA-K4-A6MB-01 1 39900203 39900203 G C MACF1 Missense_Mutation p.E3833Q 0.86 possibly_damaging(0.85) TCGA-K4-A6MB-01 1 40034501 40034501 C T PABPC4 Silent p.L283L 0.09 TCGA-K4-A6MB-01 1 44437073 44437073 C G DPH2 Missense_Mutation p.L167V 0.57 tolerated(0.31) benign(0.013) TCGA-K4-A6MB-01 1 47611950 47611950 G T CYP4A22 Intron 0.16 TCGA-K4-A6MB-01 1 52703859 52703859 C T ZFYVE9 Missense_Mutation p.S257F 0.22 tolerated_low_confidence(0.61) benign(0.089) TCGA-K4-A6MB-01 1 5947410 5947410 G A NPHP4 Silent p.R807R 0.71 TCGA-K4-A6MB-01 1 64125406 64125406 G A PGM1 3'UTR 0.67 TCGA-K4-A6MB-01 1 65130323 65130323 C A CACHD1 Missense_Mutation p.S695Y 0.33 deleterious(0) possibly_damaging(0.735) TCGA-K4-A6MB-01 1 65858197 65858197 C T DNAJC6 Silent p.L518L 0.16 TCGA-K4-A6MB-01 1 67450443 67450443 G T MIER1 Missense_Mutation p.D520Y 0.24 tolerated(0.12) benign(0.004) TCGA-K4-A6MB-01 1 68954598 68954598 C G DEPDC1 Splice_Site p.X197_splice 0.39 TCGA-K4-A6MB-01 1 74929232 74929232 G A TNNI3K Missense_Mutation p.E808K 0.05 tolerated(0.16) probably_damaging(0.99) TCGA-K4-A6MB-01 1 92568029 92568029 G C BTBD8 Splice_Site p.X116_splice 0.75 TCGA-K4-A6MB-01 20 2297889 2297889 C T TGM3 Missense_Mutation p.T282I 0.19 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 20 32295480 32295480 C T PXMP4 3'UTR 0.60 TCGA-K4-A6MB-01 20 37203508 37203508 G A RALGAPB Silent p.Q1461Q 0.59 TCGA-K4-A6MB-01 20 42635357 42635357 C T TOX2 Silent p.A112A 0.32 TCGA-K4-A6MB-01 20 44869807 44869807 C G CDH22 Silent p.L115L 0.20 TCGA-K4-A6MB-01 20 47731407 47731407 G A STAU1 3'UTR 0.53 TCGA-K4-A6MB-01 20 5282745 5282745 C G PROKR2 Missense_Mutation p.D366H 0.25 deleterious(0.01) possibly_damaging(0.603) TCGA-K4-A6MB-01 20 60994684 60994684 G A RBBP8NL Missense_Mutation p.S7L 0.33 deleterious(0.01) probably_damaging(0.976) TCGA-K4-A6MB-01 20 61919026 61919026 G A ARFGAP1 Missense_Mutation p.R349H 0.24 tolerated(0.6) benign(0.004) TCGA-K4-A6MB-01 21 31768886 31768886 G A KRTAP13-1 Missense_Mutation p.C161Y 0.17 deleterious(0.04) benign(0.333) TCGA-K4-A6MB-01 21 35468865 35468865 C G SLC5A3 Missense_Mutation p.F456L 0.23 deleterious(0) probably_damaging(0.994) TCGA-K4-A6MB-01 21 35757939 35757939 G T SMIM11 Nonstop_Mutation p.*59Lext*22 0.35 TCGA-K4-A6MB-01 21 45547985 45547985 G C PWP2 Missense_Mutation p.E771D 0.51 deleterious(0.04) benign(0.232) TCGA-K4-A6MB-01 21 45548015 45548015 G A PWP2 Silent p.A781A 0.44 TCGA-K4-A6MB-01 21 47532167 47532167 C T COL6A2 Silent p.R130R 0.39 TCGA-K4-A6MB-01 22 17072544 17072544 G A CCT8L2 Silent p.V299V 0.31 TCGA-K4-A6MB-01 22 21965299 21965299 G T UBE2L3 Nonsense_Mutation p.E151* 0.15 TCGA-K4-A6MB-01 22 29707996 29707996 G A GAS2L1 3'UTR 0.36 TCGA-K4-A6MB-01 22 38327865 38327865 A G MICALL1 Silent p.T647T 0.36 TCGA-K4-A6MB-01 22 41791841 41791841 C A TEF Silent p.I263I 0.36 TCGA-K4-A6MB-01 22 42952603 42952603 C T SERHL2 Intron 0.30 TCGA-K4-A6MB-01 22 45958819 45958819 G C FBLN1 Intron 0.35 TCGA-K4-A6MB-01 22 50752281 50752281 G A DENND6B Missense_Mutation p.L389F 0.37 deleterious(0) probably_damaging(0.989) TCGA-K4-A6MB-01 22 51123010 51123010 C G SHANK3 Intron 0.28 TCGA-K4-A6MB-01 2 10830038 10830038 C G NOL10 5'UTR 0.62 TCGA-K4-A6MB-01 2 10912040 10912040 C T ATP6V1C2 Silent p.V182V 0.40 TCGA-K4-A6MB-01 2 112541926 112541926 G A ANAPC1 Missense_Mutation p.L1657F 0.19 deleterious(0) possibly_damaging(0.876) TCGA-K4-A6MB-01 2 113147101 113147101 C T RGPD8 Missense_Mutation p.A1141T 0.14 tolerated(0.09) probably_damaging(0.994) TCGA-K4-A6MB-01 2 11725904 11725904 C T GREB1 Silent p.S344S 0.42 TCGA-K4-A6MB-01 2 128477565 128477565 C T WDR33 Silent p.Q678Q 0.20 TCGA-K4-A6MB-01 2 130951796 130951796 C G TUBA3E Missense_Mutation p.E207Q 0.30 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-K4-A6MB-01 2 136673798 136673798 C T DARS Silent p.L368L 0.56 TCGA-K4-A6MB-01 2 141533778 141533778 A C LRP1B Missense_Mutation p.L1797V 0.18 benign(0.364) TCGA-K4-A6MB-01 2 159481497 159481497 G A PKP4 Silent p.L237L 0.27 TCGA-K4-A6MB-01 2 160287599 160287599 C G BAZ2B Missense_Mutation p.D657H 0.13 possibly_damaging(0.861) TCGA-K4-A6MB-01 2 1652233 1652233 G A PXDN Missense_Mutation p.R1107W 0.15 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 2 165404260 165404260 G C GRB14 Missense_Mutation p.R131G 0.12 deleterious(0) benign(0.392) TCGA-K4-A6MB-01 2 170063152 170063152 G C LRP2 Missense_Mutation p.L2360V 0.18 benign(0.027) TCGA-K4-A6MB-01 2 172930476 172930476 G C METAP1D Missense_Mutation p.D165H 0.29 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 2 175446123 175446123 C G WIPF1 Silent p.G32G 0.22 TCGA-K4-A6MB-01 2 176958222 176958222 C T HOXD13 Missense_Mutation p.H202Y 0.21 deleterious(0.04) benign(0.439) TCGA-K4-A6MB-01 2 179445025 179445025 G A TTN Intron 0.49 TCGA-K4-A6MB-01 2 179643809 179643809 C T TTN Missense_Mutation p.G1334R 0.53 TCGA-K4-A6MB-01 2 189909916 189909916 G A COL5A2 Missense_Mutation p.R1118C 0.42 unknown(0) TCGA-K4-A6MB-01 2 190592617 190592617 G A ANKAR Missense_Mutation p.E891K 0.21 tolerated(0.06) possibly_damaging(0.83) TCGA-K4-A6MB-01 2 204591441 204591441 C T CD28 Silent p.L46L 0.25 TCGA-K4-A6MB-01 2 21228694 21228694 C G APOB Missense_Mutation p.K3682N 0.14 probably_damaging(0.989) TCGA-K4-A6MB-01 2 219289008 219289008 G C VIL1 Missense_Mutation p.Q28H 0.43 deleterious(0.02) possibly_damaging(0.617) TCGA-K4-A6MB-01 2 223096987 223096987 G C PAX3 Nonsense_Mutation p.S201* 0.22 TCGA-K4-A6MB-01 2 228497893 228497893 G A C2orf83 5'Flank 0.25 TCGA-K4-A6MB-01 2 234622085 234622085 C T UGT1A5 Silent p.L150L 0.37 TCGA-K4-A6MB-01 2 241725797 241725797 G C KIF1A Missense_Mutation p.S188C 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-K4-A6MB-01 2 241974125 241974125 C T SNED1 Silent p.R261R 0.62 TCGA-K4-A6MB-01 2 32733070 32733070 G A BIRC6 Missense_Mutation p.E3242K 0.32 possibly_damaging(0.788) TCGA-K4-A6MB-01 2 33500049 33500049 C T LTBP1 Nonsense_Mutation p.Q921* 0.26 TCGA-K4-A6MB-01 2 33614363 33614363 C T LTBP1 Silent p.F1608F 0.47 TCGA-K4-A6MB-01 2 33741658 33741658 G A RASGRP3 Silent p.L40L 0.27 TCGA-K4-A6MB-01 2 61180158 61180158 C G PUS10 Missense_Mutation p.D428H 0.24 deleterious(0.01) benign(0.107) TCGA-K4-A6MB-01 2 68385241 68385241 G T PNO1 Missense_Mutation p.V59F 0.29 tolerated(0.2) benign(0.063) TCGA-K4-A6MB-01 2 73441405 73441405 C G SMYD5 Missense_Mutation p.S4C 0.24 tolerated_low_confidence(0.06) benign(0.334) TCGA-K4-A6MB-01 2 74688445 74688445 C T MOGS Missense_Mutation p.G824D 0.21 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 3 100988366 100988366 C G IMPG2 Missense_Mutation p.E294Q 0.37 deleterious(0.01) benign(0.044) TCGA-K4-A6MB-01 3 101484276 101484276 C G CEP97 Missense_Mutation p.P827A 0.16 tolerated_low_confidence(0.54) benign(0) TCGA-K4-A6MB-01 3 10387112 10387112 C T ATP2B2 Missense_Mutation p.V887M 0.46 deleterious(0.01) benign(0.4) TCGA-K4-A6MB-01 3 113684115 113684115 G A ZDHHC23 3'Flank 0.05 TCGA-K4-A6MB-01 3 122478187 122478187 G A HSPBAP1 Silent p.F151F 0.50 TCGA-K4-A6MB-01 3 124418747 124418747 G C AC080008.1 5'Flank 0.25 TCGA-K4-A6MB-01 3 12533660 12533660 C T TSEN2 Missense_Mutation p.S72L 0.33 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 3 132063807 132063807 G A ACPP Missense_Mutation p.E229K 0.17 tolerated(0.58) benign(0) TCGA-K4-A6MB-01 3 132407671 132407671 C A NPHP3 Missense_Mutation p.R983I 0.21 tolerated(0.54) benign(0.016) TCGA-K4-A6MB-01 3 132409476 132409476 C T NPHP3 Nonsense_Mutation p.W863* 0.37 TCGA-K4-A6MB-01 3 137983015 137983015 C G ARMC8 Silent p.T406T 0.51 TCGA-K4-A6MB-01 3 15563198 15563198 C T COLQ 5'UTR 0.56 TCGA-K4-A6MB-01 3 167031856 167031856 G A ZBBX Silent p.G441G 0.21 TCGA-K4-A6MB-01 3 168802617 168802617 C T MECOM 3'UTR 0.41 TCGA-K4-A6MB-01 3 175520828 175520828 G A NAALADL2 Missense_Mutation p.R742Q 0.17 tolerated(1) benign(0) TCGA-K4-A6MB-01 3 183528370 183528370 G T YEATS2 Nonstop_Mutation p.*1423Lext*3 0.25 TCGA-K4-A6MB-01 3 183528415 183528415 G A YEATS2 3'UTR 0.33 TCGA-K4-A6MB-01 3 24138771 24138771 C T LINC00691 RNA 0.15 TCGA-K4-A6MB-01 3 3072565 3072565 C T CNTN4 Silent p.I563I 0.15 TCGA-K4-A6MB-01 3 38058157 38058157 C G PLCD1 Missense_Mutation p.E106Q 0.17 tolerated(0.32) benign(0.003) TCGA-K4-A6MB-01 3 44867897 44867897 G C KIF15 Missense_Mutation p.E911Q 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A6MB-01 3 48423353 48423353 C T FBXW12 Silent p.I383I 0.38 TCGA-K4-A6MB-01 3 49292905 49292905 G C CCDC36 Missense_Mutation p.E205D 0.34 tolerated(0.06) possibly_damaging(0.449) TCGA-K4-A6MB-01 3 51399412 51399412 T A DOCK3 Missense_Mutation p.L1710Q 0.21 tolerated_low_confidence(0.1) benign(0.125) TCGA-K4-A6MB-01 3 51667674 51667674 C T RAD54L2 Silent p.L303L 0.53 TCGA-K4-A6MB-01 3 51929156 51929156 C T IQCF1 Missense_Mutation p.R123Q 0.42 tolerated(0.34) benign(0.028) TCGA-K4-A6MB-01 3 52822256 52822256 G C ITIH1 Missense_Mutation p.D672H 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-K4-A6MB-01 3 62142873 62142873 G C PTPRG Missense_Mutation p.R272T 0.06 deleterious(0.05) possibly_damaging(0.513) TCGA-K4-A6MB-01 3 77651534 77651534 G A ROBO2 Missense_Mutation p.E1026K 0.39 tolerated(0.31) benign(0.292) TCGA-K4-A6MB-01 4 100134834 100134834 G A ADH6 Missense_Mutation p.P64L 0.43 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 4 104082605 104082605 C T CENPE Missense_Mutation p.E618K 0.42 benign(0.293) TCGA-K4-A6MB-01 4 110932610 110932610 G T EGF Nonstop_Mutation p.*1208Lext*24 0.35 TCGA-K4-A6MB-01 4 113353729 113353729 G T ALPK1 Missense_Mutation p.R1009L 0.78 deleterious(0.03) benign(0.079) TCGA-K4-A6MB-01 4 113353731 113353731 G T ALPK1 Missense_Mutation p.A1010S 0.76 deleterious(0) probably_damaging(0.979) TCGA-K4-A6MB-01 4 120446713 120446713 C T PDE5A Missense_Mutation p.M590I 0.31 tolerated(1) benign(0.004) TCGA-K4-A6MB-01 4 126369882 126369882 G A FAT4 Missense_Mutation p.E2571K 0.30 benign(0.064) TCGA-K4-A6MB-01 4 13601435 13601435 C T BOD1L1 Silent p.L2363L 0.39 TCGA-K4-A6MB-01 4 146823326 146823326 G C ZNF827 Missense_Mutation p.S362C 0.68 deleterious(0.02) possibly_damaging(0.849) TCGA-K4-A6MB-01 4 155256083 155256083 A T DCHS2 Missense_Mutation p.L385I 0.87 tolerated(0.18) benign(0.216) TCGA-K4-A6MB-01 4 155467 155467 G C ZNF718 RNA 0.66 TCGA-K4-A6MB-01 4 16165044 16165044 C T TAPT1 Missense_Mutation p.D531N 0.25 tolerated(0.12) benign(0.215) TCGA-K4-A6MB-01 4 169176889 169176889 T C DDX60 Missense_Mutation p.K1177R 0.70 tolerated(0.37) benign(0.009) TCGA-K4-A6MB-01 4 1827401 1827401 C T LETM1 Missense_Mutation p.E364K 0.15 tolerated(0.8) benign(0.05) TCGA-K4-A6MB-01 4 189026007 189026007 C G TRIML2 Missense_Mutation p.R40T 0.61 tolerated(0.06) possibly_damaging(0.46) TCGA-K4-A6MB-01 4 189026044 189026044 C G TRIML2 Missense_Mutation p.E28Q 0.67 deleterious(0.02) possibly_damaging(0.886) TCGA-K4-A6MB-01 4 3117909 3117909 C G HTT Silent p.V329V 0.14 TCGA-K4-A6MB-01 4 47453593 47453593 C - COMMD8 3'UTR 0.32 TCGA-K4-A6MB-01 4 5418605 5418605 C T STK32B Missense_Mutation p.T169M 0.21 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 4 55141141 55141141 G A PDGFRA Splice_Site p.X596_splice 0.56 TCGA-K4-A6MB-01 4 56758876 56758876 G A EXOC1 Missense_Mutation p.E575K 0.17 tolerated(0.6) benign(0.02) TCGA-K4-A6MB-01 4 57842852 57842852 C T NOA1 Silent p.P300P 0.23 TCGA-K4-A6MB-01 4 65275064 65275064 G C TECRL Missense_Mutation p.F2L 0.25 tolerated_low_confidence(0.12) benign(0.008) TCGA-K4-A6MB-01 4 79832129 79832133 AAAGC - BMP2K Frame_Shift_Del p.A811Vfs*3 0.22 TCGA-K4-A6MB-01 5 115351059 115351059 A G AQPEP Missense_Mutation p.E854G 0.28 deleterious(0.01) probably_damaging(0.957) TCGA-K4-A6MB-01 5 133537700 133537700 C T PPP2CA Missense_Mutation p.E109K 0.35 tolerated(0.05) benign(0.006) TCGA-K4-A6MB-01 5 133745644 133745644 C G CDKN2AIPNL Missense_Mutation p.E97Q 0.45 tolerated(0.23) probably_damaging(0.979) TCGA-K4-A6MB-01 5 137088854 137088854 C G HNRNPA0 Missense_Mutation p.G301A 0.16 tolerated_low_confidence(0.13) unknown(0) TCGA-K4-A6MB-01 5 137802542 137802542 G A EGR1 Missense_Mutation p.G135D 0.55 deleterious(0) probably_damaging(0.982) TCGA-K4-A6MB-01 5 140215433 140215433 C T PCDHA7 Silent p.L489L 0.26 TCGA-K4-A6MB-01 5 140719896 140719896 C A PCDHGA2 Missense_Mutation p.S453Y 0.24 tolerated_low_confidence(0.05) benign(0.074) TCGA-K4-A6MB-01 5 140768277 140768277 G A PCDHGB4 Missense_Mutation p.E276K 0.52 tolerated(0.07) possibly_damaging(0.477) TCGA-K4-A6MB-01 5 145894881 145894881 C T GPR151 Missense_Mutation p.E266K 0.25 deleterious(0.01) possibly_damaging(0.833) TCGA-K4-A6MB-01 5 153857102 153857102 G A HAND1 Missense_Mutation p.S156F 0.58 tolerated(0.11) benign(0.002) TCGA-K4-A6MB-01 5 162930313 162930313 T A MAT2B 5'Flank 0.30 TCGA-K4-A6MB-01 5 168100279 168100279 C G SLIT3 Missense_Mutation p.Q1248H 0.30 tolerated(0.1) benign(0.022) TCGA-K4-A6MB-01 5 172571488 172571488 G A BNIP1 5'UTR 0.73 TCGA-K4-A6MB-01 5 173491291 173491291 C G NSG2 Missense_Mutation p.F62L 0.56 tolerated(1) benign(0.004) TCGA-K4-A6MB-01 5 178359501 178359501 A T ZFP2 Missense_Mutation p.Y396F 0.43 tolerated(0.07) benign(0.166) TCGA-K4-A6MB-01 5 178391770 178391770 G A ZNF454 Missense_Mutation p.C122Y 0.27 tolerated(0.52) benign(0) TCGA-K4-A6MB-01 5 179743770 179743770 G A GFPT2 Silent p.A382A 0.32 TCGA-K4-A6MB-01 5 22142960 22142960 C T CDH12 Intron 0.29 TCGA-K4-A6MB-01 5 26902796 26902796 C T CDH9 Missense_Mutation p.D348N 0.20 deleterious(0) benign(0.308) TCGA-K4-A6MB-01 5 33658336 33658336 A G ADAMTS12 Silent p.D381D 0.21 TCGA-K4-A6MB-01 5 40843462 40843462 G A CARD6 Silent p.K164K 0.20 TCGA-K4-A6MB-01 5 53814457 53814457 G A SNX18 Silent p.V225V 0.26 TCGA-K4-A6MB-01 5 5463270 5463270 G A KIAA0947 Missense_Mutation p.E1275K 0.15 tolerated(0.19) benign(0.184) TCGA-K4-A6MB-01 5 55077779 55077779 C T DDX4 Nonsense_Mutation p.Q199* 0.44 TCGA-K4-A6MB-01 5 7804697 7804697 G T ADCY2 Splice_Site p.X926_splice 0.24 TCGA-K4-A6MB-01 5 80256710 80256710 C G RASGRF2 Silent p.L51L 0.27 TCGA-K4-A6MB-01 5 89968399 89968399 G A GPR98 Missense_Mutation p.E1597K 0.22 probably_damaging(0.973) TCGA-K4-A6MB-01 6 107096958 107096958 C T QRSL1 Nonsense_Mutation p.Q147* 0.35 TCGA-K4-A6MB-01 6 107110891 107110891 G A QRSL1 Silent p.V399V 0.63 TCGA-K4-A6MB-01 6 108197836 108197836 C T SEC63 Missense_Mutation p.A656T 0.47 tolerated(0.18) benign(0.222) TCGA-K4-A6MB-01 6 110988759 110988759 G A CDK19 Missense_Mutation p.R112C 0.19 deleterious(0) probably_damaging(0.989) TCGA-K4-A6MB-01 6 123384818 123384818 G A CLVS2 Splice_Site p.X299_splice 0.16 TCGA-K4-A6MB-01 6 130497110 130497110 C T SAMD3 Missense_Mutation p.R233Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-K4-A6MB-01 6 135778639 135778639 C G AHI1 Missense_Mutation p.D382H 0.26 deleterious(0.02) possibly_damaging(0.711) TCGA-K4-A6MB-01 6 146268656 146268656 G A SHPRH Silent p.V395V 0.47 TCGA-K4-A6MB-01 6 151773559 151773559 C A C6orf211 5'UTR 0.45 TCGA-K4-A6MB-01 6 160240103 160240103 C G PNLDC1 Silent p.V450V 0.53 TCGA-K4-A6MB-01 6 160908384 160908384 C T LPAL2 RNA 0.21 TCGA-K4-A6MB-01 6 166571930 166571930 G A T Missense_Mutation p.S394F 0.56 deleterious(0.02) benign(0.309) TCGA-K4-A6MB-01 6 167591999 167591999 C T TCP10L2 Missense_Mutation p.A209V 0.14 tolerated(0.64) benign(0.147) TCGA-K4-A6MB-01 6 2624139 2624139 G C C6orf195 5'UTR 0.40 TCGA-K4-A6MB-01 6 30682949 30682949 C T MDC1 Missense_Mutation p.E2K 0.50 deleterious(0) probably_damaging(0.956) TCGA-K4-A6MB-01 6 31636389 31636389 C G CSNK2B-LY6G5B-1181 Missense_Mutation p.I83M 0.60 deleterious(0) probably_damaging(0.996) TCGA-K4-A6MB-01 6 31637174 31637174 C G CSNK2B-LY6G5B-1181 Nonsense_Mutation p.S149* 0.17 TCGA-K4-A6MB-01 6 53785428 53785428 C G LRRC1 Missense_Mutation p.L429V 0.13 tolerated(0.35) possibly_damaging(0.708) TCGA-K4-A6MB-01 6 6248606 6248606 G A F13A1 Missense_Mutation p.A246V 0.25 tolerated(0.06) possibly_damaging(0.681) TCGA-K4-A6MB-01 6 656479 656479 T A HUS1B Missense_Mutation p.S156C 0.31 deleterious(0.01) benign(0.135) TCGA-K4-A6MB-01 6 74191780 74191780 C T MTO1 Silent p.I466I 0.05 TCGA-K4-A6MB-01 6 87943104 87943104 C G ZNF292 Missense_Mutation p.I200M 0.48 tolerated(0.67) benign(0.049) TCGA-K4-A6MB-01 6 87943114 87943114 C T ZNF292 Nonsense_Mutation p.Q204* 0.51 TCGA-K4-A6MB-01 7 102724142 102724142 T A ARMC10 Missense_Mutation p.D86E 0.74 tolerated(0.21) benign(0.021) TCGA-K4-A6MB-01 7 105401857 105401857 C T ATXN7L1 Intron 0.78 TCGA-K4-A6MB-01 7 106841945 106841945 G A HBP1 3'UTR 0.76 TCGA-K4-A6MB-01 7 123302493 123302493 A G LMOD2 Missense_Mutation p.I285V 0.04 tolerated(0.26) benign(0.006) TCGA-K4-A6MB-01 7 138968078 138968078 C G UBN2 Missense_Mutation p.I809M 0.20 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-K4-A6MB-01 7 138968209 138968209 C G UBN2 Missense_Mutation p.S853C 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-K4-A6MB-01 7 138968605 138968605 C A UBN2 Missense_Mutation p.S985Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.545) TCGA-K4-A6MB-01 7 138968631 138968631 C G UBN2 Missense_Mutation p.Q994E 0.23 deleterious_low_confidence(0.01) benign(0.021) TCGA-K4-A6MB-01 7 144060730 144060730 G A ARHGEF5 Missense_Mutation p.G323E 0.10 tolerated(0.2) benign(0.008) TCGA-K4-A6MB-01 7 149575806 149575806 C A ATP6V0E2 Intron 0.75 TCGA-K4-A6MB-01 7 150325268 150325268 G A GIMAP6 Nonsense_Mutation p.Q140* 0.31 TCGA-K4-A6MB-01 7 156518477 156518477 G A LMBR1 Missense_Mutation p.L350F 0.76 deleterious(0) possibly_damaging(0.903) TCGA-K4-A6MB-01 7 2402753 2402753 C T EIF3B Silent p.F287F 0.19 TCGA-K4-A6MB-01 7 37960801 37960801 C T EPDR1 Missense_Mutation p.P87L 0.56 deleterious(0) benign(0.081) TCGA-K4-A6MB-01 7 47897389 47897389 C T PKD1L1 Silent p.E1468E 0.22 TCGA-K4-A6MB-01 7 48026960 48026960 G A SUN3 Silent p.F347F 0.34 TCGA-K4-A6MB-01 7 64389235 64389235 G A ZNF273 Missense_Mutation p.G510E 0.85 tolerated(0.09) probably_damaging(1) TCGA-K4-A6MB-01 7 72412579 72412579 C T POM121 Nonsense_Mutation p.Q418* 0.05 TCGA-K4-A6MB-01 7 86826053 86826053 C G TMEM243 Missense_Mutation p.D86H 0.27 deleterious(0) probably_damaging(0.988) TCGA-K4-A6MB-01 7 93090216 93090216 G C CALCR Missense_Mutation p.L223V 0.04 tolerated(0.12) possibly_damaging(0.797) TCGA-K4-A6MB-01 8 101273804 101273804 G C RNF19A Missense_Mutation p.L550V 0.14 tolerated(0.08) benign(0.111) TCGA-K4-A6MB-01 8 101273810 101273810 C A RNF19A Missense_Mutation p.G548W 0.15 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 8 103845432 103845432 G C AZIN1 Missense_Mutation p.I252M 0.04 deleterious(0.02) possibly_damaging(0.847) TCGA-K4-A6MB-01 8 105026785 105026785 C T RIMS2 Silent p.V1092V 0.77 TCGA-K4-A6MB-01 8 145622095 145622095 G A CPSF1 Missense_Mutation p.S881F 0.21 deleterious(0.01) benign(0.071) TCGA-K4-A6MB-01 8 33408568 33408568 T C RNF122 Silent p.L88L 0.18 TCGA-K4-A6MB-01 8 41519023 41519023 C G ANK1 Intron 0.20 TCGA-K4-A6MB-01 8 71041012 71041012 G C NCOA2 Silent p.L1176L 0.15 TCGA-K4-A6MB-01 8 72754673 72754673 G C MSC 3'UTR 0.93 TCGA-K4-A6MB-01 8 95500998 95500998 G C KIAA1429 Nonsense_Mutation p.S1792* 0.81 TCGA-K4-A6MB-01 9 117072974 117072974 G A COL27A1 Silent p.%3D 0.83 TCGA-K4-A6MB-01 9 136321320 136321320 C G ADAMTS13 Missense_Mutation p.S1233C 0.30 deleterious(0.03) benign(0.159) TCGA-K4-A6MB-01 9 16727860 16727860 C T BNC2 Missense_Mutation p.E89K 0.29 deleterious_low_confidence(0.03) benign(0.007) TCGA-K4-A6MB-01 9 33034305 33034305 G A DNAJA1 Silent p.Q245Q 0.77 TCGA-K4-A6MB-01 9 34385778 34385778 C T C9orf24 Missense_Mutation p.G46D 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-K4-A6MB-01 9 39086769 39086769 C G CNTNAP3 Missense_Mutation p.D1100H 0.20 deleterious(0) probably_damaging(0.997) TCGA-K4-A6MB-01 9 8460493 8460493 C T PTPRD Missense_Mutation p.E1265K 0.29 deleterious(0.05) probably_damaging(0.983) TCGA-K4-A6MB-01 9 84608319 84608319 C T SPATA31D1 Silent p.S978S 0.20 TCGA-K4-A6MB-01 9 90503512 90503512 A G SPATA31E1 Silent p.R1370R 0.38 TCGA-K4-A6MB-01 X 134494183 134494183 C T ZNF449 Missense_Mutation p.P247S 0.31 tolerated(0.16) benign(0.01) TCGA-K4-A6MB-01 X 139038362 139038362 G C CXorf66 Missense_Mutation p.S260C 0.82 deleterious(0) benign(0.254) TCGA-K4-A6MB-01 X 148035156 148035156 G A AFF2 Missense_Mutation p.G482R 0.83 deleterious(0) probably_damaging(1) TCGA-K4-A6MB-01 X 2658979 2658979 T A CD99 3'UTR 0.38 TCGA-K4-A6MB-01 X 2779646 2779646 G A GYG2 Silent p.A338A 0.81 TCGA-K4-A6MB-01 X 31090081 31090081 G A FTHL17 5'UTR 0.81 TCGA-K4-A6MB-01 X 3239789 3239789 G A MXRA5 Missense_Mutation p.L1313F 0.91 tolerated(0.28) benign(0.142) TCGA-K4-A6MB-01 X 37969647 37969647 G A SYTL5 Missense_Mutation p.R525H 0.06 tolerated(0.38) benign(0.011) TCGA-K4-A6MB-01 X 50213577 50213600 GGCGGCGGCGGCCAAGGCGGCGGA - DGKK RNA 0.44 TCGA-K4-A6MB-01 X 54838641 54838641 C G MAGED2 Missense_Mutation p.L348V 0.58 deleterious(0.01) possibly_damaging(0.823) TCGA-K4-A6MB-01 X 69261637 69261637 G A AWAT2 3'UTR 0.84 TCGA-K4-A6MB-01 X 6995398 6995398 T C HDHD1 Missense_Mutation p.S148G 0.90 tolerated(0.16) benign(0.014) TCGA-K4-A6MB-01 X 86880669 86880669 C G KLHL4 Silent p.L399L 0.91 TCGA-K4-A6MB-01 Y 14952195 14952195 G T USP9Y Missense_Mutation p.D1915Y 0.89 deleterious(0) probably_damaging(0.981) TCGA-K4-A6MB-01 Y 14952494 14952494 G T USP9Y Silent p.V2014V 0.87 TCGA-K4-A83P-01 10 11308601 11308601 G C CELF2 Missense_Mutation p.Q193H 0.05 deleterious(0.03) possibly_damaging(0.834) TCGA-K4-A83P-01 10 115970461 115970461 C T TDRD1 Silent p.H502H 0.11 TCGA-K4-A83P-01 10 121658028 121658028 C G SEC23IP Missense_Mutation p.Q85E 0.10 deleterious(0.04) benign(0.297) TCGA-K4-A83P-01 10 123687413 123687413 C T ATE1 Missense_Mutation p.E18K 0.15 tolerated(0.21) benign(0.002) TCGA-K4-A83P-01 10 13230890 13230890 G C MCM10 Missense_Mutation p.E410Q 0.05 tolerated(0.43) possibly_damaging(0.745) TCGA-K4-A83P-01 10 26463232 26463232 G C MYO3A Missense_Mutation p.D1347H 0.09 deleterious_low_confidence(0.03) benign(0.114) TCGA-K4-A83P-01 10 28345491 28345491 G A MPP7 Missense_Mutation p.S490L 0.09 tolerated(0.33) benign(0.003) TCGA-K4-A83P-01 10 31133898 31133898 C G ZNF438 Missense_Mutation p.E827Q 0.04 tolerated(0.06) benign(0.02) TCGA-K4-A83P-01 10 44112496 44112496 C G ZNF485 Missense_Mutation p.F335L 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-K4-A83P-01 10 49634093 49634093 C G MAPK8 Nonsense_Mutation p.S284* 0.05 TCGA-K4-A83P-01 10 6156039 6156039 G C RBM17 Missense_Mutation p.E320Q 0.06 deleterious(0.02) possibly_damaging(0.565) TCGA-K4-A83P-01 10 70645939 70645939 G C STOX1 Missense_Mutation p.R796T 0.08 tolerated(0.55) benign(0.055) TCGA-K4-A83P-01 10 73992847 73992847 G T ANAPC16 Silent p.L102L 0.07 TCGA-K4-A83P-01 10 76781642 76781642 G A KAT6B Missense_Mutation p.E1009K 0.08 possibly_damaging(0.838) TCGA-K4-A83P-01 11 102826440 102826440 A G MMP13 5'UTR 0.07 TCGA-K4-A83P-01 11 118968638 118968638 G A DPAGT1 Nonsense_Mutation p.Q282* 0.07 TCGA-K4-A83P-01 11 123601209 123601209 T C ZNF202 Missense_Mutation p.R130G 0.04 deleterious(0) possibly_damaging(0.893) TCGA-K4-A83P-01 11 130343481 130343481 G A ADAMTS15 Missense_Mutation p.R873H 0.11 tolerated(0.54) benign(0.003) TCGA-K4-A83P-01 11 46890667 46890667 T C LRP4 Missense_Mutation p.Y1570C 0.13 deleterious(0) probably_damaging(0.962) TCGA-K4-A83P-01 11 48146561 48146561 G A PTPRJ Missense_Mutation p.A306T 0.08 tolerated(0.45) benign(0.001) TCGA-K4-A83P-01 11 49227663 49227663 T G FOLH1 Silent p.A60A 0.03 TCGA-K4-A83P-01 11 5153296 5153296 C T OR52A5 Missense_Mutation p.E193K 0.05 tolerated(0.13) possibly_damaging(0.772) TCGA-K4-A83P-01 11 55371710 55371710 A T OR4C11 Missense_Mutation p.I47N 0.07 deleterious(0) probably_damaging(0.966) TCGA-K4-A83P-01 11 56230301 56230301 T C OR5M9 Missense_Mutation p.K193E 0.06 deleterious(0) possibly_damaging(0.854) TCGA-K4-A83P-01 11 57886177 57886177 G A OR9I1 Missense_Mutation p.A247V 0.06 tolerated(0.09) benign(0.17) TCGA-K4-A83P-01 11 58978247 58978247 G A MPEG1 Missense_Mutation p.P698S 0.06 tolerated(0.8) benign(0.003) TCGA-K4-A83P-01 11 59857824 59857824 A G MS4A2 Missense_Mutation p.T68A 0.06 deleterious(0.03) benign(0.002) TCGA-K4-A83P-01 11 59860886 59860886 T C MS4A2 Missense_Mutation p.L131P 0.05 deleterious(0) possibly_damaging(0.822) TCGA-K4-A83P-01 11 61254054 61254054 G A PPP1R32 Missense_Mutation p.R269Q 0.09 deleterious(0.01) benign(0.045) TCGA-K4-A83P-01 11 70267647 70267647 G A CTTN Intron 0.06 TCGA-K4-A83P-01 11 9459667 9459667 C G IPO7 Missense_Mutation p.L844V 0.04 deleterious(0.01) benign(0.162) TCGA-K4-A83P-01 11 95512827 95512827 C G FAM76B Missense_Mutation p.Q212H 0.04 tolerated(0.07) probably_damaging(0.989) TCGA-K4-A83P-01 12 11139049 11139049 C T TAS2R50 Silent p.L137L 0.09 TCGA-K4-A83P-01 12 122862450 122862450 G A CLIP1 Missense_Mutation p.S48F 0.05 deleterious(0) possibly_damaging(0.555) TCGA-K4-A83P-01 12 133378500 133378500 C T GOLGA3 Silent p.Q551Q 0.09 TCGA-K4-A83P-01 12 21454134 21454134 A T SLCO1A2 Missense_Mutation p.V220D 0.11 deleterious(0) possibly_damaging(0.866) TCGA-K4-A83P-01 12 21721898 21721898 A G GYS2 Missense_Mutation p.Y242H 0.07 tolerated(0.1) probably_damaging(0.98) TCGA-K4-A83P-01 12 25232375 25232375 G A LRMP Missense_Mutation p.D39N 0.12 tolerated_low_confidence(0.17) benign(0.058) TCGA-K4-A83P-01 12 3757700 3757700 C T EFCAB4B Intron 0.15 TCGA-K4-A83P-01 12 45803231 45803231 A G ANO6 Missense_Mutation p.M679V 0.06 tolerated(0.12) benign(0.008) TCGA-K4-A83P-01 12 4634707 4634707 T A C12orf4 Missense_Mutation p.K183N 0.09 tolerated(0.52) benign(0.009) TCGA-K4-A83P-01 12 49521941 49521941 C G TUBA1B Missense_Mutation p.E386Q 0.05 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-K4-A83P-01 12 53776633 53776633 C G SP1 Nonsense_Mutation p.S301* 0.05 TCGA-K4-A83P-01 12 54338863 54338863 G A HOXC13 Silent p.L272L 0.08 TCGA-K4-A83P-01 12 56525269 56525269 C T ESYT1 Silent p.G241G 0.04 TCGA-K4-A83P-01 12 56638175 56638175 C T ANKRD52 Missense_Mutation p.E923K 0.09 tolerated(0.94) benign(0.008) TCGA-K4-A83P-01 12 75807384 75807384 T C GLIPR1L2 Missense_Mutation p.W163R 0.04 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 12 90004276 90004276 C G ATP2B1 Missense_Mutation p.E753Q 0.12 deleterious(0.03) possibly_damaging(0.506) TCGA-K4-A83P-01 12 9021200 9021200 C G A2ML1 Missense_Mutation p.P1377A 0.07 tolerated(0.06) probably_damaging(0.98) TCGA-K4-A83P-01 13 109617198 109617198 T C MYO16 Missense_Mutation p.F751L 0.10 deleterious(0.02) possibly_damaging(0.496) TCGA-K4-A83P-01 13 67801586 67801586 T C PCDH9 Silent p.T329T 0.05 TCGA-K4-A83P-01 13 92797117 92797117 G T GPC5 Missense_Mutation p.W479L 0.05 tolerated(0.24) benign(0.007) TCGA-K4-A83P-01 13 94197621 94197621 A G GPC6 Missense_Mutation p.E89G 0.03 deleterious(0) possibly_damaging(0.507) TCGA-K4-A83P-01 14 21541245 21541245 C T ARHGEF40 Silent p.A15A 0.06 TCGA-K4-A83P-01 14 21967685 21967685 C T METTL3 Missense_Mutation p.R468Q 0.09 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 14 24108426 24108426 G A DHRS2 Missense_Mutation p.G60E 0.18 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 14 26918138 26918138 C T NOVA1 Missense_Mutation p.G184D 0.05 deleterious(0) unknown(0) TCGA-K4-A83P-01 14 35871662 35871662 C T NFKBIA Missense_Mutation p.E282K 0.07 deleterious(0.02) probably_damaging(0.982) TCGA-K4-A83P-01 14 50911764 50911764 G C MAP4K5 Missense_Mutation p.S445C 0.15 tolerated(0.07) benign(0.004) TCGA-K4-A83P-01 14 60581493 60581493 G A PCNXL4 Silent p.L21L 0.17 TCGA-K4-A83P-01 14 69256451 69256452 - C ZFP36L1 Frame_Shift_Ins p.S273Lfs*18 0.18 TCGA-K4-A83P-01 14 77294698 77294698 C T C14orf166B Silent p.S51S 0.21 TCGA-K4-A83P-01 14 95571561 95571561 G C DICER1 Missense_Mutation p.A1039G 0.06 tolerated(0.15) probably_damaging(0.99) TCGA-K4-A83P-01 15 23108867 23108867 A G RP11-566K19.6 RNA 0.05 TCGA-K4-A83P-01 15 25349873 25349873 G A SNHG14 RNA 0.09 TCGA-K4-A83P-01 15 37184325 37184325 C T MEIS2 3'UTR 0.07 TCGA-K4-A83P-01 15 43748205 43748205 T C TP53BP1 Silent p.S867S 0.04 TCGA-K4-A83P-01 15 43819769 43819769 T C MAP1A Missense_Mutation p.F2033S 0.08 probably_damaging(0.998) TCGA-K4-A83P-01 15 55841140 55841140 G A PYGO1 Missense_Mutation p.P35S 0.06 deleterious(0.01) unknown(0) TCGA-K4-A83P-01 15 59144044 59144044 A G FAM63B Silent p.G539G 0.05 TCGA-K4-A83P-01 15 59175901 59175901 G C SLTM Missense_Mutation p.Q974E 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-K4-A83P-01 16 19467983 19467983 C G TMC5 Intron 0.08 TCGA-K4-A83P-01 16 2285351 2285351 C T E4F1 Silent p.I711I 0.11 TCGA-K4-A83P-01 16 30518129 30518129 C A ITGAL Missense_Mutation p.D820E 0.12 tolerated(1) benign(0.001) TCGA-K4-A83P-01 16 67970132 67970132 G A PSMB10 Silent p.I76I 0.08 TCGA-K4-A83P-01 16 68712041 68712041 G C CDH3 Missense_Mutation p.R84T 0.08 tolerated(0.05) benign(0.016) TCGA-K4-A83P-01 16 8862693 8862693 A G ABAT Missense_Mutation p.T227A 0.03 tolerated(0.1) benign(0.003) TCGA-K4-A83P-01 16 89785450 89785452 CTT - VPS9D1 In_Frame_Del p.E53del 0.15 TCGA-K4-A83P-01 16 9858342 9858342 G T GRIN2A Missense_Mutation p.S1020Y 0.06 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-K4-A83P-01 17 10235527 10235527 G C MYH13 Silent p.L729L 0.07 TCGA-K4-A83P-01 17 10348136 10348136 T A MYH4 Missense_Mutation p.R1849S 0.07 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 17 1635658 1635658 G A WDR81 Silent p.V1399V 0.06 TCGA-K4-A83P-01 17 20200324 20200324 C T SPECC1 Silent p.F997F 0.11 TCGA-K4-A83P-01 17 27002138 27002138 A G SUPT6H Missense_Mutation p.M166V 0.10 tolerated(0.29) unknown(0) TCGA-K4-A83P-01 17 37687083 37687083 C T CDK12 Silent p.S1329S 0.07 TCGA-K4-A83P-01 17 37866662 37866662 G T ERBB2 Missense_Mutation p.D277Y 0.08 tolerated(0.06) possibly_damaging(0.899) TCGA-K4-A83P-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.12 deleterious(0) probably_damaging(0.994) TCGA-K4-A83P-01 17 39084853 39084853 C G KRT23 Missense_Mutation p.E215Q 0.04 tolerated(0.22) benign(0.424) TCGA-K4-A83P-01 17 4848226 4848226 C A RNF167 Missense_Mutation p.S323Y 0.05 deleterious(0) possibly_damaging(0.598) TCGA-K4-A83P-01 17 48593987 48593987 G T MYCBPAP Nonsense_Mutation p.E88* 0.08 TCGA-K4-A83P-01 17 56565497 56565497 C T HSF5 Missense_Mutation p.E47K 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-K4-A83P-01 17 58275806 58275806 C T USP32 Splice_Site p.X1084_splice 0.08 TCGA-K4-A83P-01 17 63185416 63185416 G C RGS9 Missense_Mutation p.V223L 0.07 tolerated(0.2) benign(0.044) TCGA-K4-A83P-01 17 65197273 65197273 C G HELZ Missense_Mutation p.R134T 0.07 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-K4-A83P-01 17 7667517 7667517 G A DNAH2 Missense_Mutation p.V1088M 0.13 benign(0.003) TCGA-K4-A83P-01 17 7750888 7750888 C - KDM6B Frame_Shift_Del p.A429Rfs*58 0.10 TCGA-K4-A83P-01 17 8044597 8044597 G C PER1 Nonsense_Mutation p.S1221* 0.07 TCGA-K4-A83P-01 18 21723368 21723368 C G CABYR Missense_Mutation p.Q64E 0.09 tolerated(1) possibly_damaging(0.839) TCGA-K4-A83P-01 18 31241670 31241670 T A ASXL3 Missense_Mutation p.F149Y 0.13 probably_damaging(0.995) TCGA-K4-A83P-01 18 31324049 31324049 G A ASXL3 Missense_Mutation p.V1413I 0.05 benign(0.005) TCGA-K4-A83P-01 18 42532951 42532951 G A SETBP1 Missense_Mutation p.E1216K 0.09 tolerated(0.07) benign(0.231) TCGA-K4-A83P-01 18 5416076 5416076 T C EPB41L3 Missense_Mutation p.D603G 0.06 deleterious(0) probably_damaging(0.99) TCGA-K4-A83P-01 18 74580640 74580640 G C ZNF236 Splice_Site p.X120_splice 0.10 TCGA-K4-A83P-01 18 74631777 74631777 C T ZNF236 Missense_Mutation p.S1105L 0.04 tolerated(0.15) benign(0.003) TCGA-K4-A83P-01 19 10404756 10404756 G C ICAM5 Missense_Mutation p.W584C 0.07 deleterious(0) possibly_damaging(0.784) TCGA-K4-A83P-01 19 11456266 11456266 C G TMEM205 Silent p.L10L 0.08 TCGA-K4-A83P-01 19 11977056 11977056 A G ZNF439 Missense_Mutation p.T29A 0.04 deleterious(0) probably_damaging(0.996) TCGA-K4-A83P-01 19 15234050 15234050 C T ILVBL Silent p.T114T 0.08 TCGA-K4-A83P-01 19 19337520 19337520 C T NCAN Missense_Mutation p.P433L 0.14 deleterious(0.04) benign(0.116) TCGA-K4-A83P-01 19 2877544 2877544 T G ZNF556 Silent p.T196T 0.06 TCGA-K4-A83P-01 19 37037818 37037818 G T ZNF529 Missense_Mutation p.H548N 0.06 tolerated(0.36) benign(0.002) TCGA-K4-A83P-01 19 37037819 37037819 C T ZNF529 Silent p.G547G 0.06 TCGA-K4-A83P-01 19 39422995 39422995 C G MRPS12 Silent p.L24L 0.10 TCGA-K4-A83P-01 19 39972525 39972525 C T TIMM50 Silent p.A140A 0.07 TCGA-K4-A83P-01 19 43708311 43708311 G A PSG4 Silent p.L53L 0.07 TCGA-K4-A83P-01 19 50475338 50475338 C G VRK3 3'Flank 0.09 TCGA-K4-A83P-01 19 53432648 53432648 C T ZNF321P Missense_Mutation p.M70I 0.07 tolerated(0.16) benign(0.049) TCGA-K4-A83P-01 19 5456194 5456194 C T ZNRF4 Missense_Mutation p.S231L 0.10 tolerated(0.11) benign(0.007) TCGA-K4-A83P-01 19 55598902 55598902 G A EPS8L1 Missense_Mutation p.E698K 0.06 tolerated(0.44) benign(0.012) TCGA-K4-A83P-01 19 55693510 55693510 C T PTPRH Silent p.V1024V 0.05 TCGA-K4-A83P-01 19 55994180 55994180 C T ZNF628 Silent p.C540C 0.18 TCGA-K4-A83P-01 19 56466257 56466257 C A NLRP8 Missense_Mutation p.P278H 0.05 deleterious(0) probably_damaging(0.994) TCGA-K4-A83P-01 19 56485124 56485124 G C NLRP8 Missense_Mutation p.D881H 0.05 deleterious(0.03) possibly_damaging(0.873) TCGA-K4-A83P-01 19 57325137 57325137 T G PEG3 Missense_Mutation p.Q1558P 0.13 tolerated(0.14) benign(0.002) TCGA-K4-A83P-01 19 58367498 58367498 G T CTD-2583A14.10 Silent p.V20V 0.04 TCGA-K4-A83P-01 19 58367545 58367545 A T CTD-2583A14.10 Missense_Mutation p.Q36L 0.09 deleterious(0) probably_damaging(0.984) TCGA-K4-A83P-01 19 58367546 58367546 G T CTD-2583A14.10 Missense_Mutation p.Q36H 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-K4-A83P-01 19 6454713 6454713 C T SLC25A23 Missense_Mutation p.E167K 0.04 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 19 8620611 8620611 G A MYO1F Missense_Mutation p.L25F 0.06 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 19 9061280 9061280 T G MUC16 Silent p.A8722A 0.07 TCGA-K4-A83P-01 19 9065702 9065702 C T MUC16 Silent p.L7248L 0.04 TCGA-K4-A83P-01 1 110466036 110466036 G C CSF1 Missense_Mutation p.E265Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-K4-A83P-01 1 11898675 11898675 G A CLCN6 Silent p.T829T 0.05 TCGA-K4-A83P-01 1 12061880 12061880 A T MFN2 Missense_Mutation p.E342V 0.05 deleterious(0) probably_damaging(0.994) TCGA-K4-A83P-01 1 12336509 12336509 T C VPS13D Missense_Mutation p.L955P 0.05 probably_damaging(0.993) TCGA-K4-A83P-01 1 147380325 147380325 G C GJA8 Missense_Mutation p.Q81H 0.08 deleterious(0) probably_damaging(0.978) TCGA-K4-A83P-01 1 149901793 149901793 G T MTMR11 Missense_Mutation p.P555T 0.08 tolerated(0.4) benign(0.328) TCGA-K4-A83P-01 1 155188254 155188254 G A MTX1 3'Flank 0.08 TCGA-K4-A83P-01 1 156563378 156563378 G A APOA1BP Intron 0.17 TCGA-K4-A83P-01 1 160097407 160097407 G A ATP1A2 Missense_Mutation p.A272T 0.16 tolerated(0.46) benign(0.099) TCGA-K4-A83P-01 1 160850408 160850408 T C ITLN1 Missense_Mutation p.T219A 0.06 tolerated(0.09) benign(0.16) TCGA-K4-A83P-01 1 160914931 160914931 C G ITLN2 Nonstop_Mutation p.*326Sext*26 0.10 TCGA-K4-A83P-01 1 161596035 161596035 A T FCGR3B Silent p.I195I 0.10 TCGA-K4-A83P-01 1 16559112 16559112 G C RSG1 Silent p.L140L 0.06 TCGA-K4-A83P-01 1 16641726 16641726 G A FBXO42 Missense_Mutation p.S63L 0.14 deleterious(0) probably_damaging(0.998) TCGA-K4-A83P-01 1 16641730 16641730 G A FBXO42 Missense_Mutation p.L62F 0.14 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 1 169437400 169437400 G A SLC19A2 Silent p.L438L 0.15 TCGA-K4-A83P-01 1 170007446 170007446 C T KIFAP3 Missense_Mutation p.E168K 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-K4-A83P-01 1 172410853 172410853 T C PIGC 3'UTR 0.03 TCGA-K4-A83P-01 1 180805846 180805846 C G XPR1 Missense_Mutation p.H499D 0.05 tolerated(0.05) benign(0.026) TCGA-K4-A83P-01 1 186644473 186644473 A G PTGS2 Missense_Mutation p.I438T 0.06 deleterious(0) probably_damaging(0.977) TCGA-K4-A83P-01 1 193117044 193117044 A G CDC73 Silent p.R259R 0.07 TCGA-K4-A83P-01 1 196659332 196659332 G A CFH Silent p.E433E 0.10 TCGA-K4-A83P-01 1 196695907 196695907 T C CFH Silent p.C691C 0.06 TCGA-K4-A83P-01 1 201060815 201060815 T C CACNA1S Missense_Mutation p.E216G 0.06 deleterious(0) probably_damaging(0.976) TCGA-K4-A83P-01 1 201193807 201193807 G T IGFN1 Missense_Mutation p.A3431S 0.13 probably_damaging(0.992) TCGA-K4-A83P-01 1 205799455 205799455 G A PM20D1 Silent p.G446G 0.09 TCGA-K4-A83P-01 1 235618938 235618938 C A B3GALNT2 Missense_Mutation p.D362Y 0.14 deleterious(0.03) benign(0.183) TCGA-K4-A83P-01 1 237794836 237794836 T A RYR2 Missense_Mutation p.S2184T 0.11 possibly_damaging(0.828) TCGA-K4-A83P-01 1 247588547 247588547 C G NLRP3 Missense_Mutation p.S601C 0.12 deleterious(0) probably_damaging(0.995) TCGA-K4-A83P-01 1 247737759 247737759 C A GCSAML 3'UTR 0.09 TCGA-K4-A83P-01 1 248201694 248201694 T A OR2L2 Missense_Mutation p.L42Q 0.06 tolerated(0.1) benign(0.05) TCGA-K4-A83P-01 1 248202322 248202322 T A OR2L2 Nonsense_Mutation p.Y251* 0.10 TCGA-K4-A83P-01 1 249211412 249211412 A G PGBD2 Missense_Mutation p.H210R 0.10 tolerated(0.64) benign(0.004) TCGA-K4-A83P-01 1 26136235 26136235 C G SEPN1 Missense_Mutation p.Q312E 0.06 deleterious(0) probably_damaging(0.993) TCGA-K4-A83P-01 1 26507068 26507068 C T CNKSR1 Silent p.L59L 0.12 TCGA-K4-A83P-01 1 27056181 27056181 C T ARID1A Nonsense_Mutation p.Q393* 0.11 TCGA-K4-A83P-01 1 34068019 34068019 G A CSMD2 Silent p.L2222L 0.06 TCGA-K4-A83P-01 1 35656390 35656390 T A SFPQ Silent p.G408G 0.04 TCGA-K4-A83P-01 1 35913902 35913902 G C KIAA0319L Missense_Mutation p.I795M 0.06 deleterious(0.01) possibly_damaging(0.766) TCGA-K4-A83P-01 1 45221772 45221772 G A KIF2C Silent p.V280V 0.04 TCGA-K4-A83P-01 1 55051509 55051509 G A ACOT11 Silent p.A81A 0.08 TCGA-K4-A83P-01 1 59247951 59247951 G C JUN Missense_Mutation p.I264M 0.07 deleterious(0.03) probably_damaging(0.981) TCGA-K4-A83P-01 1 65860683 65860683 A G DNAJC6 Missense_Mutation p.Q669R 0.06 tolerated(0.43) benign(0.39) TCGA-K4-A83P-01 1 77094309 77094309 G A ST6GALNAC3 Missense_Mutation p.E246K 0.09 possibly_damaging(0.674) TCGA-K4-A83P-01 1 87012758 87012758 C G CLCA4 5'Flank 0.06 TCGA-K4-A83P-01 20 13251182 13251182 C T ISM1 Missense_Mutation p.S57L 0.19 tolerated(0.17) benign(0.036) TCGA-K4-A83P-01 20 24950942 24950942 C G APMAP Missense_Mutation p.D202H 0.04 deleterious(0) probably_damaging(0.996) TCGA-K4-A83P-01 20 35090880 35090880 C T DLGAP4 Intron 0.07 TCGA-K4-A83P-01 20 35219951 35219951 C G TGIF2 3'UTR 0.13 TCGA-K4-A83P-01 20 44533742 44533742 G - PLTP Frame_Shift_Del p.L241* 0.14 TCGA-K4-A83P-01 20 5294852 5294852 A G PROKR2 Missense_Mutation p.V55A 0.08 tolerated(0.19) benign(0.003) TCGA-K4-A83P-01 20 56140584 56140584 A G PCK1 Silent p.G531G 0.15 TCGA-K4-A83P-01 20 57251424 57251424 G C STX16 3'UTR 0.08 TCGA-K4-A83P-01 20 62062712 62062712 G C KCNQ2 Missense_Mutation p.Q377E 0.05 tolerated(0.9) benign(0.002) TCGA-K4-A83P-01 21 11047483 11047483 T C BAGE2 Intron 0.04 TCGA-K4-A83P-01 21 19701569 19701569 A T TMPRSS15 Missense_Mutation p.L566H 0.09 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 21 47931385 47931385 G A DIP2A Silent p.L320L 0.11 TCGA-K4-A83P-01 22 20079084 20079084 C A DGCR8 Missense_Mutation p.S478Y 0.05 tolerated(0.05) possibly_damaging(0.73) TCGA-K4-A83P-01 22 23165585 23165585 C A IGLV2-8 Missense_Mutation p.N52K 0.10 deleterious_low_confidence(0.03) benign(0.045) TCGA-K4-A83P-01 22 23165695 23165695 G A IGLV2-8 Missense_Mutation p.G89D 0.12 deleterious_low_confidence(0.01) benign(0.433) TCGA-K4-A83P-01 22 24916415 24916415 C T UPB1 Silent p.C284C 0.11 TCGA-K4-A83P-01 22 25144925 25144925 G A PIWIL3 Silent p.S466S 0.05 TCGA-K4-A83P-01 22 29095920 29095920 T A CHEK2 Missense_Mutation p.E348V 0.04 deleterious(0) possibly_damaging(0.822) TCGA-K4-A83P-01 22 38130999 38130999 G C TRIOBP Missense_Mutation p.E1552D 0.09 deleterious_low_confidence(0.02) benign(0.3) TCGA-K4-A83P-01 22 39812837 39812837 C T TAB1 Silent p.D122D 0.10 TCGA-K4-A83P-01 22 45961043 45961043 A G FBLN1 Intron 0.10 TCGA-K4-A83P-01 2 101624450 101624450 C G TBC1D8 Missense_Mutation p.E1086Q 0.05 tolerated(0.07) benign(0.161) TCGA-K4-A83P-01 2 111413387 111413387 G C BUB1 Missense_Mutation p.S602C 0.07 deleterious(0.05) possibly_damaging(0.868) TCGA-K4-A83P-01 2 163130334 163130334 G A IFIH1 Missense_Mutation p.L809F 0.05 deleterious(0.01) possibly_damaging(0.658) TCGA-K4-A83P-01 2 167055835 167055835 C G SCN9A Missense_Mutation p.E1761Q 0.05 deleterious(0) probably_damaging(0.914) TCGA-K4-A83P-01 2 168096396 168096396 C G XIRP2 Nonsense_Mutation p.S297* 0.06 TCGA-K4-A83P-01 2 168103176 168103176 G A XIRP2 Silent p.L1758L 0.06 TCGA-K4-A83P-01 2 170681135 170681135 T C METTL5 5'UTR 0.05 TCGA-K4-A83P-01 2 17697544 17697544 A G RAD51AP2 Silent p.C713C 0.06 TCGA-K4-A83P-01 2 17902480 17902480 G C SMC6 Missense_Mutation p.Q259E 0.05 tolerated(0.22) benign(0.008) TCGA-K4-A83P-01 2 179429057 179429057 C G TTN Missense_Mutation p.D27268H 0.10 TCGA-K4-A83P-01 2 179441726 179441726 G A TTN Silent p.F23112F 0.05 TCGA-K4-A83P-01 2 183707229 183707229 T C FRZB Missense_Mutation p.Y190C 0.06 deleterious(0) probably_damaging(0.964) TCGA-K4-A83P-01 2 209113380 209113380 C G IDH1 Missense_Mutation p.D43H 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-K4-A83P-01 2 220238958 220238958 T A DNPEP 3'UTR 0.12 TCGA-K4-A83P-01 2 223513457 223513457 A G FARSB Splice_Site p.X38_splice 0.06 TCGA-K4-A83P-01 2 225379487 225379487 G T CUL3 Missense_Mutation p.D127E 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-K4-A83P-01 2 24494686 24494686 C T ITSN2 Missense_Mutation p.E736K 0.07 tolerated(0.42) unknown(0) TCGA-K4-A83P-01 2 26916025 26916025 C T KCNK3 Silent p.I94I 0.09 TCGA-K4-A83P-01 2 27892155 27892155 G A SLC4A1AP Missense_Mutation p.E416K 0.09 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 2 37474713 37474713 C G NDUFAF7 Missense_Mutation p.L351V 0.05 deleterious(0.04) benign(0.098) TCGA-K4-A83P-01 2 63816153 63816153 G A MDH1 5'Flank 0.06 TCGA-K4-A83P-01 2 71043187 71043187 C T CLEC4F Silent p.Q442Q 0.06 TCGA-K4-A83P-01 2 71211775 71211775 G C ANKRD53 Missense_Mutation p.R313T 0.11 tolerated(0.12) benign(0.077) TCGA-K4-A83P-01 2 71592810 71592810 G A ZNF638 Missense_Mutation p.D657N 0.10 tolerated(0.26) benign(0.011) TCGA-K4-A83P-01 2 84804399 84804399 A T DNAH6 Missense_Mutation p.E648V 0.06 tolerated(0.16) benign(0.008) TCGA-K4-A83P-01 2 9731542 9731542 C T YWHAQ Missense_Mutation p.A133T 0.07 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-K4-A83P-01 3 100645223 100645223 A G ABI3BP Missense_Mutation p.L68P 0.05 deleterious(0) possibly_damaging(0.766) TCGA-K4-A83P-01 3 101378760 101378760 G A ZBTB11 Missense_Mutation p.S638L 0.10 tolerated(0.1) benign(0.436) TCGA-K4-A83P-01 3 109046752 109046752 T A DPPA4 3'UTR 0.12 TCGA-K4-A83P-01 3 111851982 111851982 C T GCSAM 5'UTR 0.06 TCGA-K4-A83P-01 3 112357176 112357176 A T CCDC80 Missense_Mutation p.V526E 0.06 tolerated(0.28) benign(0.366) TCGA-K4-A83P-01 3 113775272 113775272 C G KIAA1407 Missense_Mutation p.R14S 0.09 tolerated(0.09) benign(0.033) TCGA-K4-A83P-01 3 119133946 119133946 T G ARHGAP31 Missense_Mutation p.I1057S 0.06 tolerated_low_confidence(0.46) benign(0.001) TCGA-K4-A83P-01 3 138121157 138121157 C T MRAS 3'UTR 0.14 TCGA-K4-A83P-01 3 141328311 141328311 G A RASA2 Missense_Mutation p.E759K 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-K4-A83P-01 3 151166406 151166406 C T IGSF10 Missense_Mutation p.D455N 0.09 tolerated(0.12) possibly_damaging(0.711) TCGA-K4-A83P-01 3 154147343 154147343 T C GPR149 Missense_Mutation p.N21S 0.07 tolerated(0.78) benign(0.01) TCGA-K4-A83P-01 3 156746102 156746102 A T LEKR1 Nonsense_Mutation p.K527* 0.10 TCGA-K4-A83P-01 3 164758786 164758786 T A SI Missense_Mutation p.T701S 0.04 deleterious(0.03) benign(0.437) TCGA-K4-A83P-01 3 17053438 17053438 A G PLCL2 Missense_Mutation p.E741G 0.09 deleterious(0.01) possibly_damaging(0.493) TCGA-K4-A83P-01 3 170884925 170884925 T A TNIK Missense_Mutation p.K303M 0.08 deleterious(0) unknown(0) TCGA-K4-A83P-01 3 173322581 173322581 A T NLGN1 Missense_Mutation p.I65F 0.05 tolerated(0.29) benign(0) TCGA-K4-A83P-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.11 tolerated(0.06) possibly_damaging(0.801) TCGA-K4-A83P-01 3 18390504 18390504 C T SATB1 3'UTR 0.25 TCGA-K4-A83P-01 3 18390764 18390764 C T SATB1 Silent p.E762E 0.10 TCGA-K4-A83P-01 3 18390769 18390769 C T SATB1 Missense_Mutation p.E761K 0.10 deleterious(0) possibly_damaging(0.616) TCGA-K4-A83P-01 3 19556878 19556878 G A KCNH8 Missense_Mutation p.E834K 0.25 tolerated(0.15) benign(0.055) TCGA-K4-A83P-01 3 196118708 196118708 C G UBXN7 Missense_Mutation p.L148F 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-K4-A83P-01 3 38182641 38182641 T C MYD88 Missense_Mutation p.L273P 0.11 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 3 42956138 42956138 C G ZNF662 Missense_Mutation p.F217L 0.09 tolerated(0.38) benign(0.352) TCGA-K4-A83P-01 3 49932628 49932628 G A MST1R Silent p.V1081V 0.04 TCGA-K4-A83P-01 3 50006080 50006080 G C RBM6 Missense_Mutation p.D408H 0.12 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 3 50326368 50326368 C A IFRD2 Nonsense_Mutation p.E360* 0.09 TCGA-K4-A83P-01 3 65341983 65341983 A C MAGI1 3'Flank 0.07 TCGA-K4-A83P-01 3 89462396 89462396 T C EPHA3 Missense_Mutation p.I623T 0.05 deleterious(0) probably_damaging(0.993) TCGA-K4-A83P-01 3 93722607 93722607 C T ARL13B Missense_Mutation p.R79W 0.15 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 4 118975467 118975467 G A NDST3 Silent p.E134E 0.07 TCGA-K4-A83P-01 4 140255359 140255359 G A NAA15 Missense_Mutation p.G29E 0.07 deleterious(0) probably_damaging(0.955) TCGA-K4-A83P-01 4 2900157 2900157 C T ADD1 Intron 0.05 TCGA-K4-A83P-01 4 71509750 71509750 C G ENAM Missense_Mutation p.S869R 0.08 deleterious(0.04) benign(0.044) TCGA-K4-A83P-01 4 81967059 81967059 C G BMP3 Missense_Mutation p.Q162E 0.04 tolerated(0.15) benign(0.174) TCGA-K4-A83P-01 4 88577665 88577665 C T DMP1 Silent p.L7L 0.04 TCGA-K4-A83P-01 4 90170047 90170047 T C GPRIN3 Silent p.Q405Q 0.05 TCGA-K4-A83P-01 5 115298292 115298292 C G AQPEP 5'UTR 0.11 TCGA-K4-A83P-01 5 115815870 115815870 C T SEMA6A Missense_Mutation p.E400K 0.05 tolerated(0.07) benign(0.035) TCGA-K4-A83P-01 5 134782178 134782178 C A C5orf20 Missense_Mutation p.L207F 0.12 tolerated_low_confidence(0.21) possibly_damaging(0.765) TCGA-K4-A83P-01 5 140250647 140250647 C T PCDHA11 Silent p.H653H 0.05 TCGA-K4-A83P-01 5 140256547 140256547 G A PCDHA12 Missense_Mutation p.R497Q 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.691) TCGA-K4-A83P-01 5 140772493 140772493 A T PCDHGA8 Missense_Mutation p.E38V 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-K4-A83P-01 5 14364830 14364830 G A TRIO Missense_Mutation p.E887K 0.06 probably_damaging(0.987) TCGA-K4-A83P-01 5 149677422 149677422 C A ARSI Silent p.V355V 0.12 TCGA-K4-A83P-01 5 154346277 154346277 G A MRPL22 Silent p.L147L 0.05 TCGA-K4-A83P-01 5 154394686 154394686 A G KIF4B Missense_Mutation p.T423A 0.04 tolerated(0.36) benign(0.031) TCGA-K4-A83P-01 5 157240233 157240233 C G CLINT1 Missense_Mutation p.E119Q 0.13 deleterious(0) possibly_damaging(0.528) TCGA-K4-A83P-01 5 158126049 158126049 A T EBF1 3'UTR 0.12 TCGA-K4-A83P-01 5 161300307 161300307 G T GABRA1 Missense_Mutation p.R147L 0.11 deleterious(0) probably_damaging(0.993) TCGA-K4-A83P-01 5 161302638 161302638 A C GABRA1 Missense_Mutation p.K183N 0.06 deleterious(0.01) benign(0.099) TCGA-K4-A83P-01 5 178552069 178552069 G T ADAMTS2 Missense_Mutation p.H955N 0.03 tolerated(0.2) benign(0.267) TCGA-K4-A83P-01 5 40843809 40843809 A G CARD6 Missense_Mutation p.E280G 0.12 deleterious(0) possibly_damaging(0.907) TCGA-K4-A83P-01 5 49699032 49699032 T G EMB Missense_Mutation p.Q286P 0.06 deleterious(0) possibly_damaging(0.818) TCGA-K4-A83P-01 5 60186872 60186872 C T ERCC8 Silent p.L295L 0.07 TCGA-K4-A83P-01 5 66460432 66460432 C G MAST4 Missense_Mutation p.L1809V 0.08 probably_damaging(0.999) TCGA-K4-A83P-01 6 109854613 109854613 T C AK9 Silent p.G1137G 0.05 TCGA-K4-A83P-01 6 117589356 117589356 T A VGLL2 Nonsense_Mutation p.Y31* 0.04 TCGA-K4-A83P-01 6 121769060 121769060 T G GJA1 Missense_Mutation p.L356R 0.07 tolerated(0.13) benign(0.389) TCGA-K4-A83P-01 6 129601240 129601240 G T LAMA2 Nonsense_Mutation p.G829* 0.08 TCGA-K4-A83P-01 6 13639909 13639909 G C RANBP9 Missense_Mutation p.Q471E 0.22 deleterious(0.01) benign(0.424) TCGA-K4-A83P-01 6 144759951 144759951 G A UTRN Missense_Mutation p.E438K 0.12 deleterious(0) probably_damaging(0.999) TCGA-K4-A83P-01 6 152555860 152555860 T C SYNE1 Silent p.Q6824Q 0.05 TCGA-K4-A83P-01 6 155458386 155458386 T A TIAM2 Missense_Mutation p.S424T 0.06 tolerated(0.13) benign(0.005) TCGA-K4-A83P-01 6 26056012 26056012 C T HIST1H1C 3'UTR 0.08 TCGA-K4-A83P-01 6 29141532 29141532 G A OR2J2 Silent p.L40L 0.11 TCGA-K4-A83P-01 6 29430094 29430094 T A OR2H1 Missense_Mutation p.I183N 0.04 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 6 31963874 31963874 G C C4A Missense_Mutation p.D1125H 0.08 tolerated(1) benign(0.001) TCGA-K4-A83P-01 6 32169159 32169159 C T NOTCH4 Missense_Mutation p.E1292K 0.11 tolerated(0.34) benign(0.11) TCGA-K4-A83P-01 6 33555391 33555391 T C GGNBP1 Intron 0.10 TCGA-K4-A83P-01 6 42016435 42016435 C G TAF8 5'Flank 0.13 TCGA-K4-A83P-01 6 43173108 43173108 C T CUL9 Silent p.P1580P 0.05 TCGA-K4-A83P-01 6 46977694 46977694 C T GPR110 Missense_Mutation p.V493I 0.09 tolerated(0.34) benign(0) TCGA-K4-A83P-01 6 51824752 51824752 C T PKHD1 Missense_Mutation p.D1942N 0.07 deleterious(0) probably_damaging(0.968) TCGA-K4-A83P-01 6 64422033 64422033 G C PHF3 Missense_Mutation p.D1517H 0.07 deleterious(0.03) benign(0.235) TCGA-K4-A83P-01 6 79650642 79650642 T A PHIP Missense_Mutation p.K1745M 0.04 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-K4-A83P-01 6 83851730 83851730 G A DOPEY1 Missense_Mutation p.E1836K 0.05 tolerated(0.19) benign(0.007) TCGA-K4-A83P-01 6 88144674 88144674 A G C6ORF165 Missense_Mutation p.Y466C 0.07 deleterious(0) probably_damaging(0.992) TCGA-K4-A83P-01 6 90642171 90642171 C T BACH2 Missense_Mutation p.D828N 0.09 deleterious(0) possibly_damaging(0.511) TCGA-K4-A83P-01 7 112723668 112723668 A G GPR85 Missense_Mutation p.I370T 0.07 deleterious_low_confidence(0.02) benign(0.04) TCGA-K4-A83P-01 7 120607594 120607594 A T ING3 Missense_Mutation p.N150Y 0.09 tolerated(0.07) benign(0.188) TCGA-K4-A83P-01 7 122130285 122130285 C A CADPS2 Missense_Mutation p.V568L 0.06 tolerated(0.28) benign(0.023) TCGA-K4-A83P-01 7 127254980 127254980 C T PAX4 Missense_Mutation p.R97H 0.09 tolerated(0.06) benign(0.024) TCGA-K4-A83P-01 7 128620040 128620040 C T TNPO3 Silent p.Q635Q 0.07 TCGA-K4-A83P-01 7 129825051 129825051 G C TMEM209 Missense_Mutation p.S311C 0.06 deleterious(0) possibly_damaging(0.8) TCGA-K4-A83P-01 7 1513857 1513857 C T INTS1 Missense_Mutation p.E1926K 0.14 deleterious(0.04) benign(0.194) TCGA-K4-A83P-01 7 151884372 151884372 G A KMT2C Silent p.F1661F 0.05 TCGA-K4-A83P-01 7 158534303 158534303 T A ESYT2 Silent p.S720S 0.09 TCGA-K4-A83P-01 7 35131502 35131502 G A DPY19L2P1 RNA 0.13 TCGA-K4-A83P-01 7 36570055 36570055 A T AOAH Missense_Mutation p.N497K 0.11 tolerated(0.13) benign(0.141) TCGA-K4-A83P-01 7 44047099 44047099 C T SPDYE1 Nonsense_Mutation p.Q289* 0.09 TCGA-K4-A83P-01 7 44664045 44664045 C T OGDH Nonsense_Mutation p.Q35* 0.03 TCGA-K4-A83P-01 7 73462856 73462856 G A ELN Missense_Mutation p.A257T 0.06 unknown(0) TCGA-K4-A83P-01 7 94034041 94034041 G A COL1A2 Missense_Mutation p.G121S 0.05 unknown(0) TCGA-K4-A83P-01 7 97823529 97823529 C T LMTK2 Missense_Mutation p.S1251F 0.18 tolerated(0.71) benign(0.005) TCGA-K4-A83P-01 8 101717853 101717853 C T PABPC1 Missense_Mutation p.A551T 0.33 deleterious(0) possibly_damaging(0.874) TCGA-K4-A83P-01 8 110457166 110457166 G T PKHD1L1 Missense_Mutation p.G1690C 0.04 deleterious(0.03) possibly_damaging(0.778) TCGA-K4-A83P-01 8 143956521 143956521 A G CYP11B1 Missense_Mutation p.F417S 0.04 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 8 145060236 145060236 G A PARP10 Silent p.F56F 0.12 TCGA-K4-A83P-01 8 145151139 145151139 G A CYC1 Missense_Mutation p.E147K 0.10 deleterious(0.02) benign(0.04) TCGA-K4-A83P-01 8 2807793 2807793 A T CSMD1 Missense_Mutation p.V3425E 0.04 benign(0.222) TCGA-K4-A83P-01 8 42977441 42977441 T C POMK Silent p.S158S 0.06 TCGA-K4-A83P-01 8 51705249 51705249 T A SNTG1 Missense_Mutation p.L472I 0.06 deleterious(0) probably_damaging(0.979) TCGA-K4-A83P-01 8 80679518 80679518 G A HEY1 Missense_Mutation p.S34L 0.06 deleterious(0.04) possibly_damaging(0.769) TCGA-K4-A83P-01 9 100667250 100667250 T C C9orf156 Missense_Mutation p.Y364C 0.13 deleterious(0) probably_damaging(0.982) TCGA-K4-A83P-01 9 104170832 104170832 A G ZNF189 Missense_Mutation p.K261R 0.07 tolerated(0.07) benign(0.267) TCGA-K4-A83P-01 9 128086083 128086083 C T GAPVD1 Missense_Mutation p.S580L 0.07 deleterious(0) probably_damaging(0.995) TCGA-K4-A83P-01 9 134501394 134501394 G C RAPGEF1 Silent p.V540V 0.17 TCGA-K4-A83P-01 9 135042359 135042359 G - NTNG2 Frame_Shift_Del p.D48Tfs*5 0.15 TCGA-K4-A83P-01 9 138706964 138706964 G C CAMSAP1 Silent p.P1495P 0.30 TCGA-K4-A83P-01 9 139620605 139620605 G A FAM69B 3'Flank 0.12 TCGA-K4-A83P-01 9 23731087 23731087 T C ELAVL2 Missense_Mutation p.D89G 0.06 tolerated(0.26) benign(0.007) TCGA-K4-A83P-01 9 35813690 35813690 C T HINT2 Missense_Mutation p.R58Q 0.10 deleterious(0.01) benign(0.062) TCGA-K4-A83P-01 9 43627570 43627570 C T SPATA31A6 Missense_Mutation p.E373K 0.05 deleterious(0.02) possibly_damaging(0.862) TCGA-K4-A83P-01 9 6256016 6256016 C T IL33 Missense_Mutation p.H221Y 0.06 deleterious(0) probably_damaging(0.978) TCGA-K4-A83P-01 9 71002416 71002416 C T PGM5 Silent p.L203L 0.04 TCGA-K4-A83P-01 9 75387378 75387378 G A TMC1 Missense_Mutation p.R264Q 0.13 deleterious(0.04) probably_damaging(0.957) TCGA-K4-A83P-01 X 10102505 10102505 C T WWC3 Silent p.L878L 0.10 TCGA-K4-A83P-01 X 123220471 123220471 C T STAG2 Missense_Mutation p.S1043F 0.13 tolerated(0.69) benign(0.135) TCGA-K4-A83P-01 X 1407523 1407523 T C CSF2RA Missense_Mutation p.Y111H 0.07 deleterious(0) probably_damaging(0.99) TCGA-K4-A83P-01 X 30254056 30254056 G A MAGEB3 Silent p.Q5Q 0.13 TCGA-K4-A83P-01 X 37029299 37029299 G C FAM47C Missense_Mutation p.G939A 0.10 deleterious(0) possibly_damaging(0.832) TCGA-K4-A83P-01 X 53615408 53615408 C T HUWE1 Silent p.Q1516Q 0.17 TCGA-K4-A83P-01 X 7811698 7811698 G A VCX Missense_Mutation p.E88K 0.11 tolerated(0.32) unknown(0) TCGA-K4-A83P-01 Y 4968032 4968032 A T PCDH11Y Missense_Mutation p.N805Y 0.13 deleterious(0) probably_damaging(1) TCGA-K4-A83P-01 Y 4968034 4968034 T A PCDH11Y Missense_Mutation p.N805K 0.13 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 10 102510508 102510508 G A PAX2 Silent p.V90V 0.24 TCGA-K4-AAQO-01 10 103577750 103577750 C A MGEA5 Missense_Mutation p.L10F 0.33 tolerated_low_confidence(0.08) benign(0.333) TCGA-K4-AAQO-01 10 104163121 104163121 C A PSD Missense_Mutation p.D971Y 0.16 deleterious(0.01) possibly_damaging(0.541) TCGA-K4-AAQO-01 10 115612502 115612502 G A DCLRE1A Missense_Mutation p.S147F 0.21 deleterious(0) possibly_damaging(0.794) TCGA-K4-AAQO-01 10 115612718 115612718 G A DCLRE1A Missense_Mutation p.S75F 0.31 tolerated(0.34) possibly_damaging(0.595) TCGA-K4-AAQO-01 10 129921181 129921181 T A MKI67 Missense_Mutation p.H84L 0.16 deleterious(0) probably_damaging(0.991) TCGA-K4-AAQO-01 10 27539705 27539705 T A RP11-85G18.6 RNA 0.12 TCGA-K4-AAQO-01 10 5258729 5258729 G A AKR1C4 Missense_Mutation p.R301K 0.21 tolerated(0.56) benign(0.01) TCGA-K4-AAQO-01 10 64913817 64913817 G C NRBF2 Missense_Mutation p.E235Q 0.10 tolerated(0.11) benign(0.084) TCGA-K4-AAQO-01 10 72539399 72539399 G C TBATA Missense_Mutation p.S126C 0.26 deleterious(0) probably_damaging(0.978) TCGA-K4-AAQO-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.24 TCGA-K4-AAQO-01 11 106681025 106681025 T A GUCY1A2 Missense_Mutation p.Q462H 0.06 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 11 1262877 1262877 C T MUC5B Silent p.Y1589Y 0.24 TCGA-K4-AAQO-01 11 14880705 14880705 C G PDE3B Missense_Mutation p.F879L 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-K4-AAQO-01 11 46569365 46569365 A T AMBRA1 Splice_Site p.X65_splice 0.33 TCGA-K4-AAQO-01 11 50003583 50003583 A T OR4C12 Missense_Mutation p.L152H 0.30 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-K4-AAQO-01 11 5020987 5020987 G T OR51L1 Missense_Mutation p.G259W 0.37 deleterious(0) probably_damaging(0.998) TCGA-K4-AAQO-01 11 59382787 59382787 C T OSBP Silent p.L117L 0.41 TCGA-K4-AAQO-01 11 62344706 62344706 G C TUT1 Silent p.V444V 0.22 TCGA-K4-AAQO-01 11 6243778 6243778 G C FAM160A2 Nonsense_Mutation p.S362* 0.22 TCGA-K4-AAQO-01 11 62933714 62933714 G T SLC22A25 Missense_Mutation p.P363T 0.10 tolerated(0.55) benign(0.034) TCGA-K4-AAQO-01 11 64977817 64977817 C A CAPN1 Silent p.L651L 0.36 TCGA-K4-AAQO-01 11 65338389 65338389 C G SSSCA1 Missense_Mutation p.I68M 0.11 tolerated(0.22) benign(0.287) TCGA-K4-AAQO-01 11 78413159 78413159 C G TENM4 Missense_Mutation p.S1500T 0.11 tolerated(0.12) benign(0.017) TCGA-K4-AAQO-01 11 83195255 83195255 C T DLG2 Missense_Mutation p.R737H 0.07 deleterious(0.05) possibly_damaging(0.618) TCGA-K4-AAQO-01 12 111652091 111652091 G A CUX2 Missense_Mutation p.E51K 0.14 deleterious(0) probably_damaging(0.996) TCGA-K4-AAQO-01 12 112572654 112572654 C G TRAFD1 Missense_Mutation p.H54D 0.23 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 12 117768643 117768643 C T NOS1 Missense_Mutation p.D78N 0.16 tolerated_low_confidence(0.12) possibly_damaging(0.513) TCGA-K4-AAQO-01 12 12334281 12334281 C T LRP6 Missense_Mutation p.E357K 0.12 tolerated(0.32) benign(0.071) TCGA-K4-AAQO-01 12 14927359 14927359 G A H2AFJ 5'UTR 0.19 TCGA-K4-AAQO-01 12 29460857 29460857 C T FAR2 Intron 0.28 TCGA-K4-AAQO-01 12 4614499 4614499 C G C12orf4 Missense_Mutation p.E404Q 0.22 tolerated(0.06) benign(0.112) TCGA-K4-AAQO-01 12 6882397 6882397 G A LAG3 Nonsense_Mutation p.W33* 0.06 TCGA-K4-AAQO-01 12 6981840 6981840 C T SPSB2 Missense_Mutation p.D76N 0.11 deleterious(0) probably_damaging(0.995) TCGA-K4-AAQO-01 12 7585982 7585982 C T CD163L1 Missense_Mutation p.V145M 0.10 tolerated(0.06) benign(0.038) TCGA-K4-AAQO-01 12 8197455 8197455 A G FOXJ2 Missense_Mutation p.K240E 0.16 deleterious(0.05) probably_damaging(0.952) TCGA-K4-AAQO-01 13 114112223 114112223 C T DCUN1D2 3'UTR 0.27 TCGA-K4-AAQO-01 13 25000653 25000653 C T PARP4 Missense_Mutation p.G1644R 0.30 deleterious(0) possibly_damaging(0.556) TCGA-K4-AAQO-01 13 31531097 31531097 G A TEX26 Missense_Mutation p.E134K 0.24 tolerated(0.2) benign(0.034) TCGA-K4-AAQO-01 13 32841333 32841333 C T FRY Missense_Mutation p.S2658F 0.14 tolerated(0.06) benign(0.001) TCGA-K4-AAQO-01 13 32929017 32929017 G C BRCA2 Missense_Mutation p.E2343Q 0.32 tolerated(0.06) possibly_damaging(0.853) TCGA-K4-AAQO-01 13 51855296 51855296 C T FAM124A Silent p.C551C 0.20 TCGA-K4-AAQO-01 13 60348350 60348350 T A DIAPH3 Missense_Mutation p.R1098W 0.10 deleterious_low_confidence(0.05) benign(0.001) TCGA-K4-AAQO-01 13 75900481 75900481 C G TBC1D4 Missense_Mutation p.E629Q 0.34 tolerated(0.14) probably_damaging(0.917) TCGA-K4-AAQO-01 13 96293710 96293710 C T DZIP1 Missense_Mutation p.E146K 0.22 deleterious(0) possibly_damaging(0.905) TCGA-K4-AAQO-01 14 100795895 100795895 C T SLC25A47 Silent p.L280L 0.25 TCGA-K4-AAQO-01 14 106692197 106692197 C A IGHV3-21 5'UTR 0.17 TCGA-K4-AAQO-01 14 107034782 107034782 G A IGHV5-51 Silent p.L100L 0.28 TCGA-K4-AAQO-01 14 21469700 21469700 G A SLC39A2 Missense_Mutation p.G298S 0.30 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 14 21840067 21840067 C G SUPT16H Missense_Mutation p.G99A 0.30 tolerated(0.09) benign(0.23) TCGA-K4-AAQO-01 14 24912026 24912026 C G SDR39U1 5'Flank 0.16 TCGA-K4-AAQO-01 14 38286831 38286831 C T TTC6 Missense_Mutation p.H1580Y 0.28 deleterious(0.03) benign(0.113) TCGA-K4-AAQO-01 14 44973816 44973816 G C FSCB Missense_Mutation p.S792C 0.09 deleterious(0.01) unknown(0) TCGA-K4-AAQO-01 14 63473186 63473186 T A KCNH5 Missense_Mutation p.M68L 0.21 tolerated(0.46) benign(0.288) TCGA-K4-AAQO-01 14 63511917 63511917 G C KCNH5 5'UTR 0.22 TCGA-K4-AAQO-01 14 64604510 64604510 A G SYNE2 Missense_Mutation p.I4884M 0.15 probably_damaging(0.971) TCGA-K4-AAQO-01 14 93264092 93264092 C T GOLGA5 Missense_Mutation p.P104S 0.22 tolerated(0.31) benign(0.106) TCGA-K4-AAQO-01 14 94088863 94088863 G C UNC79 Missense_Mutation p.D1585H 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-K4-AAQO-01 15 25438508 25438508 G A SNORD115-11 3'Flank 0.08 TCGA-K4-AAQO-01 15 41860467 41860467 C T TYRO3 Silent p.L338L 0.08 TCGA-K4-AAQO-01 15 44900705 44900705 G T SPG11 Silent p.L1130L 0.06 TCGA-K4-AAQO-01 15 48062868 48062868 C T SEMA6D Missense_Mutation p.S703F 0.27 tolerated(0.24) probably_damaging(0.986) TCGA-K4-AAQO-01 15 54592472 54592472 G T UNC13C Missense_Mutation p.G1390V 0.56 deleterious_low_confidence(0) probably_damaging(1) TCGA-K4-AAQO-01 15 65489016 65489016 C T CILP 3'UTR 0.58 TCGA-K4-AAQO-01 15 72324851 72324851 T C MYO9A Missense_Mutation p.T307A 0.33 deleterious(0) benign(0.016) TCGA-K4-AAQO-01 15 75093865 75093865 G A CSK Silent p.G272G 0.15 TCGA-K4-AAQO-01 15 90774413 90774413 C T CIB1 Missense_Mutation p.D127N 0.28 deleterious(0.01) probably_damaging(1) TCGA-K4-AAQO-01 16 10783858 10783858 G A TEKT5 Nonsense_Mutation p.R197* 0.28 TCGA-K4-AAQO-01 16 20871575 20871575 T C DCUN1D3 Missense_Mutation p.Y183C 0.14 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 16 2257345 2257345 C T MLST8 Missense_Mutation p.T191I 0.33 deleterious(0) benign(0.036) TCGA-K4-AAQO-01 16 24970995 24970995 G C ARHGAP17 Missense_Mutation p.Q241E 0.28 deleterious(0.01) possibly_damaging(0.855) TCGA-K4-AAQO-01 16 28606708 28606708 G C SULT1A2 Missense_Mutation p.L118V 0.24 deleterious(0.03) possibly_damaging(0.872) TCGA-K4-AAQO-01 16 31473740 31473740 C T ARMC5 Missense_Mutation p.S291F 0.10 deleterious(0.01) possibly_damaging(0.807) TCGA-K4-AAQO-01 16 3493130 3493130 G A ZNF597 Silent p.P8P 0.12 TCGA-K4-AAQO-01 16 3831263 3831263 G A CREBBP Nonsense_Mutation p.Q540* 0.33 TCGA-K4-AAQO-01 16 51173678 51173678 C G SALL1 Missense_Mutation p.D819H 0.44 deleterious(0) probably_damaging(0.976) TCGA-K4-AAQO-01 16 56669852 56669852 A T MT1M 3'Flank 0.09 TCGA-K4-AAQO-01 16 56973211 56973211 A G HERPUD1 Missense_Mutation p.Y165C 0.15 deleterious(0) probably_damaging(0.993) TCGA-K4-AAQO-01 16 602910 602910 G C CAPN15 Silent p.G984G 0.11 TCGA-K4-AAQO-01 16 67384149 67384149 C G LRRC36 Missense_Mutation p.S178C 0.07 tolerated(0.09) benign(0.027) TCGA-K4-AAQO-01 16 67864421 67864421 G C CENPT Missense_Mutation p.S245C 0.36 deleterious(0.01) probably_damaging(0.961) TCGA-K4-AAQO-01 16 67979685 67979685 C G SLC12A4 Missense_Mutation p.K945N 0.12 tolerated(0.07) possibly_damaging(0.844) TCGA-K4-AAQO-01 16 69965776 69965776 C A WWP2 Missense_Mutation p.D555E 0.41 deleterious(0) possibly_damaging(0.894) TCGA-K4-AAQO-01 16 69967974 69967974 C T WWP2 Missense_Mutation p.S595F 0.44 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 16 69973902 69973902 G C WWP2 3'UTR 0.44 TCGA-K4-AAQO-01 16 69973912 69973912 T G WWP2 3'UTR 0.44 TCGA-K4-AAQO-01 16 74671790 74671790 G A RFWD3 Silent p.L386L 0.25 TCGA-K4-AAQO-01 16 84488489 84488489 G C ATP2C2 Silent p.L682L 0.20 TCGA-K4-AAQO-01 17 26096580 26096580 C G NOS2 Missense_Mutation p.E614Q 0.28 tolerated(0.31) benign(0.026) TCGA-K4-AAQO-01 17 35945511 35945511 G C SYNRG Silent p.L133L 0.09 TCGA-K4-AAQO-01 17 39316560 39316560 G A KRTAP4-4 Silent p.S128S 0.31 TCGA-K4-AAQO-01 17 40272350 40272350 C G KAT2A Missense_Mutation p.E168Q 0.15 tolerated(0.14) possibly_damaging(0.859) TCGA-K4-AAQO-01 17 40354828 40354828 T G STAT5B Splice_Site p.X693_splice 0.11 TCGA-K4-AAQO-01 17 42030255 42030255 G C PYY 3'UTR 0.38 TCGA-K4-AAQO-01 17 46423348 46423348 T A SKAP1 Missense_Mutation p.S67C 0.17 deleterious(0.02) possibly_damaging(0.789) TCGA-K4-AAQO-01 17 53499079 53499079 G T MMD 5'UTR 0.14 TCGA-K4-AAQO-01 17 57057639 57057639 G A PPM1E Silent p.E505E 0.25 TCGA-K4-AAQO-01 17 57157119 57157119 C T TRIM37 Silent p.L204L 0.23 TCGA-K4-AAQO-01 17 58040406 58040406 A G RNFT1 Missense_Mutation p.I99T 0.28 tolerated(0.73) benign(0.001) TCGA-K4-AAQO-01 17 59857681 59857681 C T BRIP1 Missense_Mutation p.E626K 0.26 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 17 66535525 66535525 G T FAM20A Missense_Mutation p.H438Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-K4-AAQO-01 17 74554942 74554942 G A SNHG16 RNA 0.24 TCGA-K4-AAQO-01 17 7530270 7530270 C T SAT2 Missense_Mutation p.E99K 0.44 tolerated(0.05) benign(0.06) TCGA-K4-AAQO-01 17 7577085 7577085 C G TP53 Missense_Mutation p.E285Q 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-K4-AAQO-01 17 7577127 7577127 C G TP53 Missense_Mutation p.E271Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-K4-AAQO-01 17 79095904 79095904 G A AATK Missense_Mutation p.S611L 0.21 tolerated(0.13) possibly_damaging(0.899) TCGA-K4-AAQO-01 17 79648876 79648876 C T ARL16 Missense_Mutation p.M152I 0.33 tolerated(0.39) benign(0.005) TCGA-K4-AAQO-01 17 79649081 79649081 C T ARL16 Silent p.L135L 0.19 TCGA-K4-AAQO-01 17 79864762 79864762 G A PCYT2 Missense_Mutation p.R202W 0.12 deleterious(0) possibly_damaging(0.54) TCGA-K4-AAQO-01 17 79990652 79990652 C T RAC3 Missense_Mutation p.T58I 0.10 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-K4-AAQO-01 17 80684717 80684717 C A FN3KRP Silent p.I200I 0.14 TCGA-K4-AAQO-01 17 80685095 80685095 C T FN3KRP 3'UTR 0.19 TCGA-K4-AAQO-01 17 80714073 80714073 C G TBCD Missense_Mutation p.L73V 0.32 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 18 2946471 2946471 C T LPIN2 Intron 0.44 TCGA-K4-AAQO-01 18 30260446 30260446 C T KLHL14 Missense_Mutation p.R452H 0.09 tolerated(0.1) benign(0.173) TCGA-K4-AAQO-01 18 34740233 34740233 C G KIAA1328 Missense_Mutation p.P435A 0.18 tolerated(0.21) benign(0.002) TCGA-K4-AAQO-01 18 46808477 46808477 G C DYM Missense_Mutation p.L339V 0.30 tolerated(0.06) possibly_damaging(0.519) TCGA-K4-AAQO-01 19 10574545 10574545 A G PDE4A Missense_Mutation p.D607G 0.10 deleterious(0.03) possibly_damaging(0.765) TCGA-K4-AAQO-01 19 11942524 11942524 G C ZNF440 Missense_Mutation p.G178A 0.28 deleterious(0.01) probably_damaging(0.934) TCGA-K4-AAQO-01 19 11943066 11943066 G A ZNF440 Missense_Mutation p.E359K 0.25 tolerated(0.08) possibly_damaging(0.498) TCGA-K4-AAQO-01 19 11943873 11943873 G C ZNF440 3'UTR 0.24 TCGA-K4-AAQO-01 19 1272363 1272363 C A CIRBP Intron 0.29 TCGA-K4-AAQO-01 19 1272370 1272370 G T CIRBP Intron 0.29 TCGA-K4-AAQO-01 19 1272373 1272373 G T CIRBP Intron 0.28 TCGA-K4-AAQO-01 19 14076339 14076339 G A RFX1 Silent p.I711I 0.34 TCGA-K4-AAQO-01 19 19154811 19154811 G C ARMC6 Silent p.L69L 0.17 TCGA-K4-AAQO-01 19 2202757 2202757 C T DOT1L Missense_Mutation p.R256W 0.18 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 19 22363363 22363363 T C ZNF676 Missense_Mutation p.I386V 0.10 deleterious(0.01) benign(0.265) TCGA-K4-AAQO-01 19 2410334 2410334 C T TMPRSS9 Missense_Mutation p.S365L 0.19 deleterious(0.02) benign(0.098) TCGA-K4-AAQO-01 19 33697224 33697224 G A LRP3 Silent p.L516L 0.33 TCGA-K4-AAQO-01 19 38572647 38572647 G C SIPA1L3 Missense_Mutation p.D148H 0.69 deleterious(0) probably_damaging(0.94) TCGA-K4-AAQO-01 19 41183210 41183210 G A NUMBL Silent p.F219F 0.17 TCGA-K4-AAQO-01 19 43523021 43523021 G C PSG11 Missense_Mutation p.L204V 0.18 tolerated(0.07) possibly_damaging(0.819) TCGA-K4-AAQO-01 19 46891982 46891982 A G PPP5C Missense_Mutation p.N450S 0.08 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 19 51363446 51363446 C G KLK3 3'UTR 0.17 TCGA-K4-AAQO-01 19 51826960 51826960 G A IGLON5 Missense_Mutation p.R68H 0.31 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 19 53057820 53057820 A G ZNF808 Missense_Mutation p.N551D 0.12 tolerated(0.39) benign(0.11) TCGA-K4-AAQO-01 19 58238779 58238779 C T ZNF671 Missense_Mutation p.E40K 0.47 tolerated(0.84) benign(0.157) TCGA-K4-AAQO-01 19 58238780 58238780 C T ZNF671 Silent p.A39A 0.47 TCGA-K4-AAQO-01 19 5832250 5832250 C T FUT6 Missense_Mutation p.R110Q 0.34 deleterious(0.05) possibly_damaging(0.809) TCGA-K4-AAQO-01 19 58867574 58867574 C G ZNF497 Silent p.G476G 0.22 TCGA-K4-AAQO-01 19 6418748 6418748 T A KHSRP Missense_Mutation p.I249F 0.12 deleterious(0) probably_damaging(0.982) TCGA-K4-AAQO-01 19 9089819 9089819 C T MUC16 Missense_Mutation p.G666R 0.26 unknown(0) TCGA-K4-AAQO-01 1 101186250 101186250 T C VCAM1 Missense_Mutation p.C95R 0.10 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 1 10357026 10357026 G C KIF1B Missense_Mutation p.E599Q 0.18 tolerated(0.06) probably_damaging(0.991) TCGA-K4-AAQO-01 1 1146923 1146923 G C TNFRSF4 3'UTR 0.28 TCGA-K4-AAQO-01 1 152080593 152080593 G A TCHH Silent p.L1700L 0.10 TCGA-K4-AAQO-01 1 152192211 152192211 G A HRNR Nonsense_Mutation p.Q632* 0.31 TCGA-K4-AAQO-01 1 154315365 154315365 G A ATP8B2 Missense_Mutation p.D494N 0.24 tolerated(0.16) benign(0.012) TCGA-K4-AAQO-01 1 154570907 154570907 G A ADAR Missense_Mutation p.H586Y 0.19 tolerated(1) benign(0) TCGA-K4-AAQO-01 1 156845869 156845869 C T NTRK1 Intron 0.12 TCGA-K4-AAQO-01 1 158325766 158325766 G A CD1E Missense_Mutation p.V259I 0.43 tolerated(0.96) benign(0.002) TCGA-K4-AAQO-01 1 158736319 158736319 C A OR6N1 Missense_Mutation p.D52Y 0.06 deleterious(0) benign(0.444) TCGA-K4-AAQO-01 1 159858270 159858270 G A CCDC19 Missense_Mutation p.P97S 0.34 deleterious(0.02) benign(0.295) TCGA-K4-AAQO-01 1 16060397 16060397 C T PLEKHM2 Missense_Mutation p.R1010C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-K4-AAQO-01 1 161059143 161059143 C T PVRL4 5'UTR 0.24 TCGA-K4-AAQO-01 1 162725532 162725532 C G DDR2 Missense_Mutation p.S215C 0.21 deleterious(0) probably_damaging(0.966) TCGA-K4-AAQO-01 1 171519293 171519293 G A PRRC2C Missense_Mutation p.D1679N 0.29 unknown(0) TCGA-K4-AAQO-01 1 17548837 17548837 G A PADI1 Missense_Mutation p.E49K 0.28 tolerated(0.94) benign(0.011) TCGA-K4-AAQO-01 1 179632513 179632513 T C TDRD5 Missense_Mutation p.W846R 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-K4-AAQO-01 1 186277976 186277976 G C PRG4 Missense_Mutation p.R1042T 0.24 unknown(0) TCGA-K4-AAQO-01 1 197032027 197032027 C T F13B Silent p.T75T 0.17 TCGA-K4-AAQO-01 1 200729987 200729987 C T CAMSAP2 Nonsense_Mutation p.Q54* 0.25 TCGA-K4-AAQO-01 1 21299518 21299518 G A EIF4G3 Missense_Mutation p.P141S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-K4-AAQO-01 1 224606038 224606038 G A WDR26 Missense_Mutation p.R315W 0.34 deleterious(0) probably_damaging(0.929) TCGA-K4-AAQO-01 1 228486988 228486988 G A OBSCN Silent p.L4413L 0.32 TCGA-K4-AAQO-01 1 23848422 23848422 A - E2F2 Frame_Shift_Del p.L162Rfs*32 0.21 TCGA-K4-AAQO-01 1 32149350 32149350 C T COL16A1 Splice_Site p.X780_splice 0.29 TCGA-K4-AAQO-01 1 32696762 32696762 G A EIF3I Missense_Mutation p.D315N 0.21 deleterious(0.02) possibly_damaging(0.486) TCGA-K4-AAQO-01 1 33486988 33486988 C T AK2 Silent p.L135L 0.15 TCGA-K4-AAQO-01 1 36934781 36934781 C T CSF3R Missense_Mutation p.V518I 0.22 tolerated(1) benign(0.024) TCGA-K4-AAQO-01 1 52940784 52940784 T A ZCCHC11 Missense_Mutation p.Q816L 0.15 tolerated(0.11) benign(0.001) TCGA-K4-AAQO-01 1 63991337 63991337 G A EFCAB7 Missense_Mutation p.E32K 0.09 deleterious(0.01) benign(0.341) TCGA-K4-AAQO-01 20 10620395 10620395 G C JAG1 Missense_Mutation p.I1136M 0.10 tolerated(0.25) benign(0.186) TCGA-K4-AAQO-01 20 31811633 31811633 C A BPIFA3 Silent p.L48L 0.19 TCGA-K4-AAQO-01 20 32248107 32248107 T A NECAB3 Missense_Mutation p.E161V 0.21 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 20 33872177 33872177 G C EIF6 Intron 0.43 TCGA-K4-AAQO-01 20 35422863 35422863 C G SOGA1 Missense_Mutation p.E1208Q 0.07 tolerated(0.29) benign(0.36) TCGA-K4-AAQO-01 20 36468596 36468596 G T CTNNBL1 Nonsense_Mutation p.E436* 0.36 TCGA-K4-AAQO-01 20 40076590 40076590 C T CHD6 Missense_Mutation p.M1235I 0.07 deleterious(0.01) benign(0.379) TCGA-K4-AAQO-01 20 55918499 55918499 T C SPO11 Missense_Mutation p.F392L 0.09 tolerated(0.21) benign(0.027) TCGA-K4-AAQO-01 20 57766577 57766577 G A ZNF831 Missense_Mutation p.G168D 0.13 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 20 60971406 60971406 G C CABLES2 Missense_Mutation p.I164M 0.39 deleterious(0) probably_damaging(0.984) TCGA-K4-AAQO-01 20 61292440 61292440 G C SLCO4A1 Missense_Mutation p.R345T 0.16 deleterious(0) probably_damaging(0.938) TCGA-K4-AAQO-01 21 33039678 33039678 G T SOD1 Missense_Mutation p.R116L 0.23 deleterious(0) probably_damaging(0.953) TCGA-K4-AAQO-01 21 46308756 46308756 G C ITGB2 Missense_Mutation p.S644R 0.35 deleterious(0.01) probably_damaging(0.937) TCGA-K4-AAQO-01 22 22327043 22327043 G A TOP3B Nonsense_Mutation p.Q84* 0.37 TCGA-K4-AAQO-01 22 38694854 38694854 G A CSNK1E Silent p.R274R 0.36 TCGA-K4-AAQO-01 22 38694857 38694857 G A CSNK1E Silent p.F273F 0.35 TCGA-K4-AAQO-01 22 50216760 50216760 C A BRD1 Silent p.G402G 0.33 TCGA-K4-AAQO-01 2 108863737 108863737 G C SULT1C3 Missense_Mutation p.L29F 0.41 tolerated(0.7) benign(0.232) TCGA-K4-AAQO-01 2 120003084 120003084 G C STEAP3 Missense_Mutation p.E14D 0.15 tolerated(0.52) benign(0.002) TCGA-K4-AAQO-01 2 166911191 166911191 G A SCN1A Missense_Mutation p.R187W 0.11 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 2 16742788 16742788 G C FAM49A Missense_Mutation p.A150G 0.22 tolerated(0.08) possibly_damaging(0.877) TCGA-K4-AAQO-01 2 179553471 179553471 C T TTN Silent p.K10710K 0.35 TCGA-K4-AAQO-01 2 18766050 18766050 C G NT5C1B Missense_Mutation p.E211D 0.18 tolerated_low_confidence(0.18) benign(0.002) TCGA-K4-AAQO-01 2 197135931 197135931 C T HECW2 Silent p.R1107R 0.25 TCGA-K4-AAQO-01 2 20455896 20455896 G C PUM2 Silent p.L840L 0.11 TCGA-K4-AAQO-01 2 211070432 211070432 C G ACADL Missense_Mutation p.S231T 0.28 tolerated(0.05) benign(0.226) TCGA-K4-AAQO-01 2 219544773 219544773 C T STK36 Missense_Mutation p.S369L 0.30 tolerated(0.31) benign(0.012) TCGA-K4-AAQO-01 2 227661890 227661890 C T IRS1 Missense_Mutation p.R522Q 0.26 deleterious(0) probably_damaging(0.978) TCGA-K4-AAQO-01 2 233399896 233399896 G A CHRND Silent p.V476V 0.29 TCGA-K4-AAQO-01 2 242076584 242076584 C A PASK Silent p.A324A 0.31 TCGA-K4-AAQO-01 2 24260797 24260797 G A C2orf44 Missense_Mutation p.S523L 0.20 tolerated(0.1) benign(0.031) TCGA-K4-AAQO-01 2 26204298 26204298 C G KIF3C Missense_Mutation p.K163N 0.25 possibly_damaging(0.762) TCGA-K4-AAQO-01 2 29075301 29075301 C T TRMT61B Missense_Mutation p.G353D 0.21 deleterious(0) probably_damaging(0.942) TCGA-K4-AAQO-01 2 43452198 43452198 C T ZFP36L2 Missense_Mutation p.E249K 0.10 tolerated(0.07) possibly_damaging(0.636) TCGA-K4-AAQO-01 2 63631359 63631359 C T WDPCP Missense_Mutation p.R420H 0.11 tolerated(0.54) benign(0.005) TCGA-K4-AAQO-01 2 71206440 71206440 C A ANKRD53 Missense_Mutation p.N128K 0.27 tolerated(0.1) benign(0.143) TCGA-K4-AAQO-01 2 71206441 71206441 C A ANKRD53 Missense_Mutation p.Q129K 0.25 tolerated(0.42) benign(0.03) TCGA-K4-AAQO-01 2 71206452 71206452 G A ANKRD53 Silent p.R132R 0.25 TCGA-K4-AAQO-01 2 71376389 71376389 G A MPHOSPH10 Missense_Mutation p.E568K 0.29 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 2 71747316 71747316 G - DYSF Frame_Shift_Del p.G338Afs*32 0.20 TCGA-K4-AAQO-01 2 97505353 97505353 C T ANKRD23 Missense_Mutation p.R284Q 0.30 tolerated(0.39) benign(0.015) TCGA-K4-AAQO-01 3 108076938 108076938 C A HHLA2 Missense_Mutation p.D311E 0.18 deleterious(0) possibly_damaging(0.713) TCGA-K4-AAQO-01 3 11302198 11302198 G A HRH1 3'UTR 0.23 TCGA-K4-AAQO-01 3 122288566 122288566 G A DTX3L Missense_Mutation p.G544S 0.17 tolerated(0.62) benign(0.016) TCGA-K4-AAQO-01 3 124837679 124837679 G A SLC12A8 Silent p.F282F 0.08 TCGA-K4-AAQO-01 3 134884875 134884875 G A EPHB1 Missense_Mutation p.V551M 0.12 deleterious(0) possibly_damaging(0.646) TCGA-K4-AAQO-01 3 142272169 142272169 G A ATR Missense_Mutation p.S902F 0.24 tolerated(0.73) benign(0.019) TCGA-K4-AAQO-01 3 15643004 15643004 C G HACL1 5'UTR 0.21 TCGA-K4-AAQO-01 3 164712183 164712183 G A SI Missense_Mutation p.P1568L 0.13 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 3 168845836 168845836 T C MECOM Missense_Mutation p.Y85C 0.11 deleterious(0.01) probably_damaging(0.947) TCGA-K4-AAQO-01 3 170198771 170198771 C G SLC7A14 Missense_Mutation p.E434Q 0.24 tolerated(0.23) benign(0.243) TCGA-K4-AAQO-01 3 170216503 170216503 C T SLC7A14 Missense_Mutation p.G238R 0.19 tolerated(0.39) possibly_damaging(0.477) TCGA-K4-AAQO-01 3 19295192 19295192 C A KCNH8 Silent p.P41P 0.10 TCGA-K4-AAQO-01 3 3111734 3111734 G A IL5RA 3'UTR 0.18 TCGA-K4-AAQO-01 3 38770128 38770128 C G SCN10A Missense_Mutation p.E849Q 0.22 deleterious(0) probably_damaging(0.986) TCGA-K4-AAQO-01 3 47610659 47610659 C T CSPG5 Missense_Mutation p.E481K 0.32 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 3 52265976 52265976 G A TWF2 Missense_Mutation p.S89L 0.10 deleterious(0.02) probably_damaging(0.957) TCGA-K4-AAQO-01 3 58520108 58520108 C T ACOX2 Missense_Mutation p.R101H 0.13 tolerated(0.11) benign(0.001) TCGA-K4-AAQO-01 3 78719328 78719328 C T ROBO1 Missense_Mutation p.R489K 0.20 tolerated(1) probably_damaging(0.975) TCGA-K4-AAQO-01 3 89259598 89259598 G T EPHA3 Missense_Mutation p.G248C 0.20 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 4 123161408 123161408 G A KIAA1109 Missense_Mutation p.R1524K 0.28 probably_damaging(0.986) TCGA-K4-AAQO-01 4 1343412 1343412 G A UVSSA Missense_Mutation p.E67K 0.16 deleterious(0) possibly_damaging(0.616) TCGA-K4-AAQO-01 4 13605831 13605831 C T BOD1L1 Missense_Mutation p.R898Q 0.12 probably_damaging(0.976) TCGA-K4-AAQO-01 4 151023854 151023854 C G DCLK2 Missense_Mutation p.L216V 0.33 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 4 25254052 25254052 C T PI4K2B Silent p.I126I 0.14 TCGA-K4-AAQO-01 4 44709850 44709850 G T GNPDA2 Missense_Mutation p.Q230K 0.12 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-K4-AAQO-01 4 57829646 57829646 C T NOA1 Silent p.V689V 0.17 TCGA-K4-AAQO-01 4 6873385 6873385 C G KIAA0232 Missense_Mutation p.L1296V 0.17 deleterious_low_confidence(0.05) benign(0.007) TCGA-K4-AAQO-01 4 69362482 69362482 C A TMPRSS11E Missense_Mutation p.T411K 0.14 deleterious(0) possibly_damaging(0.899) TCGA-K4-AAQO-01 4 78085519 78085519 G A CCNG2 Silent p.K266K 0.08 TCGA-K4-AAQO-01 4 88767576 88767576 C A MEPE Nonsense_Mutation p.S519* 0.24 TCGA-K4-AAQO-01 5 132424776 132424776 C T HSPA4 Silent p.V389V 0.16 TCGA-K4-AAQO-01 5 136324113 136324113 C G SPOCK1 Missense_Mutation p.G309A 0.27 tolerated(0.29) benign(0.004) TCGA-K4-AAQO-01 5 13751263 13751263 G A DNAH5 Missense_Mutation p.S3712F 0.26 possibly_damaging(0.788) TCGA-K4-AAQO-01 5 139193896 139193896 C G PSD2 Silent p.L321L 0.14 TCGA-K4-AAQO-01 5 139725659 139725659 T A HBEGF Silent p.A19A 0.14 TCGA-K4-AAQO-01 5 140554723 140554723 C G PCDHB7 Missense_Mutation p.I769M 0.06 tolerated_low_confidence(0.09) benign(0.12) TCGA-K4-AAQO-01 5 140558373 140558373 C A PCDHB8 Missense_Mutation p.S253Y 0.17 deleterious_low_confidence(0.01) benign(0.008) TCGA-K4-AAQO-01 5 140737033 140737033 G T PCDHGA4 Nonsense_Mutation p.E756* 0.24 TCGA-K4-AAQO-01 5 154292599 154292599 C G GEMIN5 Splice_Site p.X619_splice 0.34 TCGA-K4-AAQO-01 5 167833249 167833249 G T WWC1 Nonsense_Mutation p.E213* 0.21 TCGA-K4-AAQO-01 5 172661909 172661909 C G NKX2-5 Missense_Mutation p.E60Q 0.15 tolerated(0.3) probably_damaging(0.962) TCGA-K4-AAQO-01 5 43628348 43628348 G C NNT Missense_Mutation p.E275Q 0.10 deleterious(0.04) benign(0.394) TCGA-K4-AAQO-01 5 64920896 64920896 G C TRAPPC13 Silent p.V3V 0.22 TCGA-K4-AAQO-01 5 79733788 79733788 C G ZFYVE16 Missense_Mutation p.F428L 0.10 tolerated(0.74) benign(0.001) TCGA-K4-AAQO-01 5 82789424 82789424 C G VCAN Missense_Mutation p.Q169E 0.14 deleterious(0) benign(0.098) TCGA-K4-AAQO-01 6 106727548 106727548 C T ATG5 Missense_Mutation p.G156R 0.05 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 6 116381170 116381170 G C FRK Missense_Mutation p.S102C 0.12 deleterious(0.04) probably_damaging(0.979) TCGA-K4-AAQO-01 6 117237438 117237438 C G RFX6 Missense_Mutation p.I311M 0.11 deleterious(0.03) possibly_damaging(0.54) TCGA-K4-AAQO-01 6 125231964 125231964 C A RP11-510H23.1 RNA 0.20 TCGA-K4-AAQO-01 6 134212881 134212881 G A TCF21 Missense_Mutation p.E161K 0.13 deleterious(0.02) benign(0.139) TCGA-K4-AAQO-01 6 134495696 134495696 C T SGK1 Silent p.L130L 0.10 TCGA-K4-AAQO-01 6 135299850 135299850 A G HBS1L Silent p.F588F 0.06 TCGA-K4-AAQO-01 6 137245440 137245440 G A SLC35D3 Missense_Mutation p.G286D 0.14 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 6 146755304 146755304 C T GRM1 Missense_Mutation p.A986V 0.14 tolerated_low_confidence(0.3) benign(0) TCGA-K4-AAQO-01 6 150067685 150067685 C T NUP43 5'UTR 0.27 TCGA-K4-AAQO-01 6 16247183 16247183 G A GMPR Silent p.V66V 0.27 TCGA-K4-AAQO-01 6 167365990 167365990 C G RNASET2 Missense_Mutation p.E45Q 0.08 tolerated(0.59) benign(0.029) TCGA-K4-AAQO-01 6 167711431 167711431 A G UNC93A Splice_Site p.X167_splice 0.10 TCGA-K4-AAQO-01 6 18122819 18122819 C G NHLRC1 Missense_Mutation p.E7Q 0.23 tolerated(0.46) benign(0.029) TCGA-K4-AAQO-01 6 26092911 26092911 A T HFE Splice_Site p.X206_splice 0.18 TCGA-K4-AAQO-01 6 26200172 26200172 A T HIST1H2BF 3'UTR 0.18 TCGA-K4-AAQO-01 6 26250414 26250414 C T HIST1H3F 3'UTR 0.26 TCGA-K4-AAQO-01 6 26250648 26250648 C G HIST1H3F Silent p.L62L 0.27 TCGA-K4-AAQO-01 6 30690332 30690332 G A TUBB Missense_Mutation p.D26N 0.22 deleterious_low_confidence(0.03) benign(0.011) TCGA-K4-AAQO-01 6 30691419 30691419 G C TUBB Missense_Mutation p.E194Q 0.15 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-K4-AAQO-01 6 30691514 30691514 G C TUBB Silent p.L225L 0.22 TCGA-K4-AAQO-01 6 30691799 30691799 G A TUBB Silent p.R320R 0.23 TCGA-K4-AAQO-01 6 30692054 30692054 G A TUBB Silent p.E405E 0.17 TCGA-K4-AAQO-01 6 30692058 30692058 G A TUBB Missense_Mutation p.E407K 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-K4-AAQO-01 6 30692073 30692073 G A TUBB Missense_Mutation p.E412K 0.13 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-K4-AAQO-01 6 36447426 36447426 G C KCTD20 Missense_Mutation p.R199T 0.26 deleterious(0) probably_damaging(0.992) TCGA-K4-AAQO-01 6 38976610 38976610 C G DNAH8 Missense_Mutation p.S4195C 0.10 possibly_damaging(0.781) TCGA-K4-AAQO-01 6 41773771 41773771 C G USP49 Missense_Mutation p.L317F 0.24 tolerated(0.23) benign(0.043) TCGA-K4-AAQO-01 6 49928136 49928136 C T DEFB114 Missense_Mutation p.D27N 0.20 tolerated_low_confidence(0.33) benign(0.001) TCGA-K4-AAQO-01 6 55223838 55223838 C T GFRAL Missense_Mutation p.T285M 0.21 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 6 56466252 56466252 C G DST Intron 0.17 TCGA-K4-AAQO-01 6 64394072 64394072 C G PHF3 Nonsense_Mutation p.S150* 0.12 TCGA-K4-AAQO-01 6 74229236 74229236 C G EEF1A1 Missense_Mutation p.G50R 0.31 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-K4-AAQO-01 6 76600963 76600963 A G MYO6 Silent p.A962A 0.11 TCGA-K4-AAQO-01 7 112462021 112462021 C G C7orf60 Missense_Mutation p.R332S 0.14 tolerated(0.18) benign(0.033) TCGA-K4-AAQO-01 7 112462117 112462117 C T C7orf60 Silent p.L300L 0.15 TCGA-K4-AAQO-01 7 120765940 120765940 G T CPED1 Silent p.V376V 0.08 TCGA-K4-AAQO-01 7 130042515 130042515 G C CEP41 Missense_Mutation p.S183C 0.19 deleterious(0.01) benign(0.209) TCGA-K4-AAQO-01 7 130042544 130042544 G C CEP41 Missense_Mutation p.F173L 0.15 deleterious(0.01) possibly_damaging(0.656) TCGA-K4-AAQO-01 7 132069884 132069884 C T PLXNA4 Intron 0.33 TCGA-K4-AAQO-01 7 143701984 143701984 C G OR6B1 Missense_Mutation p.L299V 0.28 deleterious(0.04) benign(0.009) TCGA-K4-AAQO-01 7 14797312 14797312 T C DGKB Missense_Mutation p.N39D 0.13 tolerated(1) benign(0.001) TCGA-K4-AAQO-01 7 156759082 156759082 G C NOM1 Missense_Mutation p.E718Q 0.14 deleterious(0.05) benign(0.101) TCGA-K4-AAQO-01 7 44046864 44046864 C T SPDYE1 Intron 0.19 TCGA-K4-AAQO-01 7 47852786 47852786 C T PKD1L1 Missense_Mutation p.V2427M 0.14 tolerated(0.15) benign(0.011) TCGA-K4-AAQO-01 7 83591072 83591072 G A SEMA3A Missense_Mutation p.S644L 0.27 deleterious(0.02) benign(0.046) TCGA-K4-AAQO-01 7 93055831 93055831 G A CALCR Missense_Mutation p.P455L 0.12 tolerated(0.28) benign(0.004) TCGA-K4-AAQO-01 8 105264109 105264109 A G RIMS2 3'Flank 0.15 TCGA-K4-AAQO-01 8 131140189 131140189 G A ASAP1 Silent p.C455C 0.11 TCGA-K4-AAQO-01 8 132002783 132002783 C T ADCY8 Silent p.V322V 0.24 TCGA-K4-AAQO-01 8 133764211 133764211 G C TMEM71 Missense_Mutation p.S45C 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-K4-AAQO-01 8 140922487 140922487 C T TRAPPC9 Silent p.E1054E 0.30 TCGA-K4-AAQO-01 8 143957228 143957228 G A CYP11B1 Missense_Mutation p.R341C 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-K4-AAQO-01 8 41575697 41575697 G A ANK1 Missense_Mutation p.A411V 0.24 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 8 51415428 51415428 G T SNTG1 Nonsense_Mutation p.E152* 0.14 TCGA-K4-AAQO-01 8 72977755 72977755 T A TRPA1 Missense_Mutation p.E161D 0.29 tolerated(0.12) benign(0.285) TCGA-K4-AAQO-01 8 77617431 77617431 G C ZFHX4 Missense_Mutation p.E370Q 0.14 possibly_damaging(0.607) TCGA-K4-AAQO-01 8 86244727 86244727 T C CA1 Missense_Mutation p.K169E 0.28 deleterious(0) possibly_damaging(0.865) TCGA-K4-AAQO-01 8 95543212 95543212 C G KIAA1429 Missense_Mutation p.D196H 0.10 deleterious(0.01) possibly_damaging(0.759) TCGA-K4-AAQO-01 9 101911663 101911663 T C TGFBR1 3'UTR 0.14 TCGA-K4-AAQO-01 9 102744902 102744902 C T ERP44 Missense_Mutation p.E405K 0.09 deleterious(0) probably_damaging(0.999) TCGA-K4-AAQO-01 9 123526756 123526756 T C FBXW2 3'UTR 0.25 TCGA-K4-AAQO-01 9 132687343 132687343 C T FNBP1 Missense_Mutation p.V295M 0.20 tolerated(0.13) benign(0.128) TCGA-K4-AAQO-01 9 136337152 136337152 G A SLC2A6 Silent p.F505F 0.12 TCGA-K4-AAQO-01 9 16419029 16419029 G A BNC2 Silent p.N1086N 0.14 TCGA-K4-AAQO-01 9 27524888 27524888 T C IFNK Missense_Mutation p.I185T 0.29 deleterious(0) probably_damaging(1) TCGA-K4-AAQO-01 9 33468069 33468069 C T NOL6 Missense_Mutation p.M461I 0.13 deleterious(0.03) possibly_damaging(0.893) TCGA-K4-AAQO-01 9 35792993 35792993 C T NPR2 Silent p.L196L 0.22 TCGA-K4-AAQO-01 9 70919080 70919080 C T FOXD4L3 Missense_Mutation p.R405W 0.28 deleterious_low_confidence(0) benign(0.005) TCGA-K4-AAQO-01 9 72967212 72967212 C A SMC5 Silent p.R1091R 0.14 TCGA-K4-AAQO-01 9 77614701 77614701 G C C9orf41 Missense_Mutation p.Q226E 0.16 tolerated(0.25) possibly_damaging(0.646) TCGA-K4-AAQO-01 9 88959987 88959987 T C ZCCHC6 Missense_Mutation p.K301R 0.22 tolerated(0.39) benign(0.007) TCGA-K4-AAQO-01 9 96294554 96294554 G A FAM120A Missense_Mutation p.E618K 0.14 tolerated(0.12) benign(0.273) TCGA-K4-AAQO-01 X 14599365 14599365 G A GLRA2 Missense_Mutation p.E111K 0.45 tolerated(0.12) benign(0.181) TCGA-K4-AAQO-01 X 24512956 24512956 G A PDK3 Silent p.P68P 0.08 TCGA-K4-AAQO-01 X 50658918 50658918 T C BMP15 Missense_Mutation p.F164L 0.28 tolerated(0.6) benign(0.002) TCGA-K4-AAQO-01 X 76937205 76937205 G C ATRX Silent p.V1181V 0.36 TCGA-K4-AAQO-01 Y 14922192 14922195 CTTC TTA USP9Y Frame_Shift_Del p.F1355* 0.33 TCGA-KQ-A41N-01 10 102676978 102676978 T C FAM178A Missense_Mutation p.I279T 0.38 tolerated(0.66) benign(0.004) TCGA-KQ-A41N-01 10 1063250 1063250 C G GTPBP4 3'UTR 0.43 TCGA-KQ-A41N-01 10 108380305 108380305 C T SORCS1 Missense_Mutation p.V893M 0.37 tolerated(0.09) probably_damaging(0.981) TCGA-KQ-A41N-01 10 116975548 116975548 T C ATRNL1 Missense_Mutation p.I481T 0.21 deleterious(0) benign(0.243) TCGA-KQ-A41N-01 10 118314964 118314964 T A PNLIP Silent p.P252P 0.16 TCGA-KQ-A41N-01 10 131676043 131676043 G A EBF3 Missense_Mutation p.R209W 0.17 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41N-01 10 29821863 29821863 C A SVIL Missense_Mutation p.G478V 0.31 tolerated(0.11) benign(0.002) TCGA-KQ-A41N-01 10 32120668 32120668 G A ARHGAP12 Nonsense_Mutation p.R483* 0.25 TCGA-KQ-A41N-01 10 34666900 34666900 T C PARD3 Missense_Mutation p.I512V 0.31 tolerated(0.05) benign(0.001) TCGA-KQ-A41N-01 10 49371666 49371666 C A FRMPD2 Missense_Mutation p.D1196Y 0.34 deleterious(0) possibly_damaging(0.885) TCGA-KQ-A41N-01 10 69955256 69955256 G T MYPN Missense_Mutation p.R1042L 0.33 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41N-01 10 70672937 70672937 C A DDX50 Missense_Mutation p.T220K 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-KQ-A41N-01 10 73569731 73569731 C T CDH23 Silent p.I719I 0.36 TCGA-KQ-A41N-01 10 88477848 88477848 T A LDB3 Missense_Mutation p.Y607N 0.30 deleterious(0) probably_damaging(0.995) TCGA-KQ-A41N-01 10 88696577 88696578 - A MMRN2 Frame_Shift_Ins p.E925* 0.28 TCGA-KQ-A41N-01 10 88911708 88911708 G C FAM35A Silent p.V199V 0.33 TCGA-KQ-A41N-01 10 90966755 90966755 C T CH25H Missense_Mutation p.V99M 0.28 deleterious(0) possibly_damaging(0.58) TCGA-KQ-A41N-01 10 95263099 95263099 G T CEP55 Missense_Mutation p.R138L 0.12 deleterious(0) benign(0.325) TCGA-KQ-A41N-01 11 101834145 101834145 T A KIAA1377 Silent p.A793A 0.60 TCGA-KQ-A41N-01 11 10784985 10784985 G A CTR9 Missense_Mutation p.S286N 0.32 tolerated(0.61) benign(0.002) TCGA-KQ-A41N-01 11 108128335 108128335 T A ATM Splice_Site p.X792_splice 0.52 TCGA-KQ-A41N-01 11 108153607 108153607 G A ATM Splice_Site p.X1249_splice 0.28 TCGA-KQ-A41N-01 11 114315275 114315275 A C REXO2 Missense_Mutation p.K108Q 0.32 tolerated(1) benign(0.01) TCGA-KQ-A41N-01 11 118107879 118107879 T C MPZL3 Missense_Mutation p.I113V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41N-01 11 120336036 120336036 C G ARHGEF12 Missense_Mutation p.Q902E 0.33 deleterious(0.04) possibly_damaging(0.586) TCGA-KQ-A41N-01 11 133790667 133790667 C T IGSF9B Missense_Mutation p.V985M 0.27 tolerated_low_confidence(1) benign(0.009) TCGA-KQ-A41N-01 11 36614485 36614485 C T RAG2 Missense_Mutation p.E412K 0.52 tolerated(0.06) benign(0.039) TCGA-KQ-A41N-01 11 57571162 57571172 TGACAGATGAA - CTNND1 Frame_Shift_Del p.L497Cfs*13 0.44 TCGA-KQ-A41N-01 11 6231723 6231731 CATCAGCAC - C11orf42 In_Frame_Del p.S240_P242del 0.29 TCGA-KQ-A41N-01 11 62622817 62622817 G A SLC3A2 5'Flank 0.37 TCGA-KQ-A41N-01 11 62623718 62623718 A G SLC3A2 5'UTR 0.47 TCGA-KQ-A41N-01 11 6519497 6519497 G C DNHD1 Missense_Mutation p.D18H 0.31 possibly_damaging(0.62) TCGA-KQ-A41N-01 11 6638644 6638644 C G TPP1 Silent p.L132L 0.15 TCGA-KQ-A41N-01 11 73881908 73881908 C T C2CD3 5'UTR 0.38 TCGA-KQ-A41N-01 11 74062614 74062614 C A PGM2L1 Missense_Mutation p.W188L 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-KQ-A41N-01 11 89938644 89938644 C G CHORDC1 Missense_Mutation p.W218S 0.29 deleterious(0) possibly_damaging(0.796) TCGA-KQ-A41N-01 12 110832921 110832921 T C ANAPC7 Silent p.R165R 0.16 TCGA-KQ-A41N-01 12 123333380 123333380 G T HIP1R Missense_Mutation p.R113L 0.80 tolerated(0.13) possibly_damaging(0.807) TCGA-KQ-A41N-01 12 124496863 124496863 G T ZNF664 Missense_Mutation p.V58F 0.77 deleterious(0) possibly_damaging(0.881) TCGA-KQ-A41N-01 12 46244254 46244254 T A ARID2 Missense_Mutation p.I783N 0.32 deleterious_low_confidence(0) benign(0.309) TCGA-KQ-A41N-01 12 46754989 46754989 A G SLC38A2 Silent p.L476L 0.36 TCGA-KQ-A41N-01 12 51449971 51449971 G C LETMD1 Silent p.L248L 0.36 TCGA-KQ-A41N-01 12 55641107 55641107 T G OR6C74 Silent p.L12L 0.41 TCGA-KQ-A41N-01 12 56668663 56668663 C G CS Splice_Site p.X307_splice 0.45 TCGA-KQ-A41N-01 12 57921741 57921741 G A MBD6 Missense_Mutation p.A783T 0.38 deleterious_low_confidence(0) unknown(0) TCGA-KQ-A41N-01 12 58001053 58001053 G A DTX3 Missense_Mutation p.R136Q 0.38 tolerated(0.61) benign(0) TCGA-KQ-A41N-01 12 6493796 6493797 - A LTBR Frame_Shift_Ins p.E49Gfs*4 0.34 TCGA-KQ-A41N-01 12 6933788 6933788 C A GPR162 Missense_Mutation p.P242T 0.39 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41N-01 12 70195401 70195401 G A RAB3IP Missense_Mutation p.V360I 0.53 tolerated(0.33) benign(0.011) TCGA-KQ-A41N-01 12 78569140 78569140 C T NAV3 Missense_Mutation p.A1679V 0.33 tolerated(0.08) possibly_damaging(0.516) TCGA-KQ-A41N-01 12 82147997 82147997 T A PPFIA2 Missense_Mutation p.M2L 0.31 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41N-01 13 28592608 28592608 C T FLT3 Missense_Mutation p.G846D 0.33 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 13 31205538 31205538 A G USPL1 Missense_Mutation p.I265M 0.30 deleterious(0.04) benign(0.028) TCGA-KQ-A41N-01 13 37012779 37012779 A G CCNA1 Splice_Site p.X224_splice 0.29 TCGA-KQ-A41N-01 13 49075961 49075961 T C RCBTB2 Silent p.E387E 0.25 TCGA-KQ-A41N-01 14 103802255 103802255 C T EIF5 Missense_Mutation p.R20C 0.29 tolerated(0.13) benign(0.038) TCGA-KQ-A41N-01 14 23746354 23746354 T C HOMEZ Missense_Mutation p.N28S 0.50 tolerated(0.09) benign(0.038) TCGA-KQ-A41N-01 14 45431805 45431805 C T FAM179B Missense_Mutation p.P61S 0.45 deleterious_low_confidence(0.04) benign(0.06) TCGA-KQ-A41N-01 14 50582876 50582877 AT TAGTCAC VCPKMT Frame_Shift_Ins p.D96Gfs*11 0.25 TCGA-KQ-A41N-01 14 50802795 50802795 A C CDKL1 Intron 0.38 TCGA-KQ-A41N-01 14 69256455 69256455 C - ZFP36L1 Frame_Shift_Del p.G271Vfs*36 0.40 TCGA-KQ-A41N-01 14 69256615 69256626 CGGTGGCAGCGG - ZFP36L1 In_Frame_Del p.A214_T217del 0.30 TCGA-KQ-A41N-01 14 69256836 69256857 AGCTCGTGGATGCCGTGTGCGA - ZFP36L1 Frame_Shift_Del p.F137Sfs*4 0.28 TCGA-KQ-A41N-01 14 70515686 70515686 C T SLC8A3 Silent p.L735L 0.40 TCGA-KQ-A41N-01 14 70925091 70925091 A T ADAM21 Missense_Mutation p.H292L 0.10 deleterious(0) possibly_damaging(0.905) TCGA-KQ-A41N-01 14 73440854 73440854 G T ZFYVE1 Silent p.R679R 0.51 TCGA-KQ-A41N-01 14 94722822 94722822 A T PPP4R4 Nonsense_Mutation p.K631* 0.32 TCGA-KQ-A41N-01 15 29561666 29561666 G A NDNL2 Nonsense_Mutation p.Q82* 0.36 TCGA-KQ-A41N-01 15 41165363 41165363 T C RHOV Missense_Mutation p.I202V 0.34 tolerated(0.09) benign(0.145) TCGA-KQ-A41N-01 15 41813014 41813014 C A RPAP1 Missense_Mutation p.D1124Y 0.47 deleterious(0.01) possibly_damaging(0.723) TCGA-KQ-A41N-01 15 42823614 42823614 G T SNAP23 Missense_Mutation p.D192Y 0.10 deleterious(0) probably_damaging(0.981) TCGA-KQ-A41N-01 15 45003742 45003742 G A B2M 5'UTR 0.27 TCGA-KQ-A41N-01 15 52011617 52011617 C G SCG3 Nonsense_Mutation p.S434* 0.33 TCGA-KQ-A41N-01 15 52011633 52011633 C T SCG3 Silent p.F439F 0.36 TCGA-KQ-A41N-01 15 56924088 56924088 C G ZNF280D Missense_Mutation p.E850Q 0.27 tolerated(0.12) benign(0.022) TCGA-KQ-A41N-01 15 60674551 60674551 G C ANXA2 Missense_Mutation p.I64M 0.38 tolerated(0.09) possibly_damaging(0.725) TCGA-KQ-A41N-01 15 65792944 65792944 C T DPP8 Silent p.T198T 0.35 TCGA-KQ-A41N-01 15 67934771 67934771 G C MAP2K5 Intron 0.50 TCGA-KQ-A41N-01 15 69079795 69079795 A G ANP32A Missense_Mutation p.L95S 0.38 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 15 69695922 69695922 C G PAQR5 Missense_Mutation p.H252D 0.29 deleterious(0) possibly_damaging(0.849) TCGA-KQ-A41N-01 15 73002038 73002038 T C BBS4 Intron 0.32 TCGA-KQ-A41N-01 15 77759545 77759545 G T HMG20A Nonsense_Mutation p.E116* 0.09 TCGA-KQ-A41N-01 15 82336694 82336694 C G MEX3B Missense_Mutation p.G173R 0.17 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 15 86087001 86087001 A G AKAP13 Splice_Site p.X160_splice 0.34 TCGA-KQ-A41N-01 15 99796162 99796162 C A LRRC28 5'UTR 0.34 TCGA-KQ-A41N-01 16 1574789 1574789 T A IFT140 Missense_Mutation p.Q998L 0.31 deleterious(0.02) benign(0.142) TCGA-KQ-A41N-01 16 19452039 19452039 A G TMC5 Missense_Mutation p.S227G 0.35 tolerated_low_confidence(1) benign(0) TCGA-KQ-A41N-01 16 20482434 20482434 C T ACSM2A Silent p.S212S 0.25 TCGA-KQ-A41N-01 16 20844392 20844392 G A AC004381.6 Missense_Mutation p.E444K 0.41 tolerated(0.2) benign(0.009) TCGA-KQ-A41N-01 16 23391898 23391898 G A SCNN1B Missense_Mutation p.A567T 0.33 tolerated(0.39) benign(0.009) TCGA-KQ-A41N-01 16 27245562 27245562 A C NSMCE1 Missense_Mutation p.S95A 0.23 tolerated(0.05) benign(0.015) TCGA-KQ-A41N-01 16 30119560 30119560 G A GDPD3 Nonsense_Mutation p.R265* 0.31 TCGA-KQ-A41N-01 16 66586508 66586508 G C CKLF 5'UTR 0.48 TCGA-KQ-A41N-01 16 84230279 84230284 TCTGCA - ADAD2 In_Frame_Del p.L600_K602delinsQ 0.35 TCGA-KQ-A41N-01 16 845787 845787 G C CHTF18 Missense_Mutation p.D760H 0.31 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 17 29848183 29848183 G A RAB11FIP4 Splice_Site p.X188_splice 0.32 TCGA-KQ-A41N-01 17 32483164 32483164 C A ASIC2 Missense_Mutation p.D130Y 0.37 deleterious(0.02) benign(0.049) TCGA-KQ-A41N-01 17 33456453 33456453 T C FNDC8 Missense_Mutation p.Y200H 0.44 tolerated(0.19) probably_damaging(0.968) TCGA-KQ-A41N-01 17 33772088 33772088 T C SLFN13 Silent p.L204L 0.40 TCGA-KQ-A41N-01 17 38978258 38978258 G T KRT10 Missense_Mutation p.R194S 0.37 deleterious(0.03) possibly_damaging(0.773) TCGA-KQ-A41N-01 17 40274945 40274945 G C HSPB9 Missense_Mutation p.R26P 0.26 tolerated(0.39) benign(0.003) TCGA-KQ-A41N-01 17 42929876 42929876 T C EFTUD2 Silent p.K872K 0.33 TCGA-KQ-A41N-01 17 43197691 43197691 C A PLCD3 Splice_Site p.X228_splice 0.22 TCGA-KQ-A41N-01 17 48559781 48559781 C T RSAD1 Silent p.G268G 0.44 TCGA-KQ-A41N-01 17 56084341 56084341 C A SRSF1 Missense_Mutation p.G53V 0.34 tolerated(0.08) possibly_damaging(0.703) TCGA-KQ-A41N-01 17 61829336 61829336 C T CCDC47 Missense_Mutation p.M445I 0.38 deleterious(0.02) possibly_damaging(0.695) TCGA-KQ-A41N-01 17 61829411 61829411 C T CCDC47 Silent p.L420L 0.35 TCGA-KQ-A41N-01 17 61869907 61869907 C T DDX42 Silent p.F119F 0.45 TCGA-KQ-A41N-01 17 62758706 62758706 G A hsa-mir-6080 RNA 0.34 TCGA-KQ-A41N-01 17 7291803 7291803 G A TNK1 Missense_Mutation p.R524Q 0.31 tolerated(0.19) probably_damaging(0.996) TCGA-KQ-A41N-01 18 13113666 13113666 C T CEP192 Missense_Mutation p.H2377Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41N-01 18 2760732 2760732 G C SMCHD1 Missense_Mutation p.E1477Q 0.24 tolerated(0.21) benign(0.027) TCGA-KQ-A41N-01 18 47010018 47010018 C T C18orf32 Missense_Mutation p.R34H 0.58 tolerated(0.24) benign(0.023) TCGA-KQ-A41N-01 18 47803485 47803485 C T MBD1 Missense_Mutation p.G67D 0.77 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 18 71928159 71928159 G T CYB5A Missense_Mutation p.N93K 0.30 tolerated(0.92) benign(0) TCGA-KQ-A41N-01 18 9950413 9950413 G T VAPA Missense_Mutation p.A192S 0.37 tolerated(0.35) benign(0.013) TCGA-KQ-A41N-01 19 1119600 1119600 T C SBNO2 Missense_Mutation p.M430V 0.41 deleterious(0) probably_damaging(0.932) TCGA-KQ-A41N-01 19 13934253 13934253 C G ZSWIM4 Missense_Mutation p.I601M 0.50 tolerated(0.08) unknown(0) TCGA-KQ-A41N-01 19 15376406 15376406 G A BRD4 Missense_Mutation p.S203L 0.43 unknown(0) TCGA-KQ-A41N-01 19 17688836 17688836 G - COLGALT1 Frame_Shift_Del p.G402Afs*13 0.28 TCGA-KQ-A41N-01 19 18893719 18893719 T A COMP 3'UTR 0.30 TCGA-KQ-A41N-01 19 19136753 19136753 T C SUGP2 Missense_Mutation p.D135G 0.11 deleterious(0) probably_damaging(0.981) TCGA-KQ-A41N-01 19 19137003 19137003 C T SUGP2 Missense_Mutation p.E52K 0.40 deleterious(0.01) benign(0.075) TCGA-KQ-A41N-01 19 19206934 19206934 A T SLC25A42 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) benign(0.146) TCGA-KQ-A41N-01 19 20229811 20229811 G T ZNF90 Missense_Mutation p.C483F 0.59 deleterious(0) probably_damaging(0.983) TCGA-KQ-A41N-01 19 20229812 20229812 T G ZNF90 Missense_Mutation p.C483W 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-KQ-A41N-01 19 21240820 21240820 A G ZNF430 Missense_Mutation p.Q569R 0.37 deleterious_low_confidence(0.03) benign(0.065) TCGA-KQ-A41N-01 19 30934512 30934512 C A ZNF536 Missense_Mutation p.P15T 0.33 deleterious_low_confidence(0) benign(0.424) TCGA-KQ-A41N-01 19 373997 373997 C T THEG Missense_Mutation p.G149D 0.19 deleterious(0.01) benign(0.242) TCGA-KQ-A41N-01 19 45871992 45871992 C G ERCC2 Missense_Mutation p.E86Q 0.44 deleterious(0) probably_damaging(0.99) TCGA-KQ-A41N-01 19 49692278 49692278 G T TRPM4 Missense_Mutation p.G650V 0.41 deleterious(0) probably_damaging(0.969) TCGA-KQ-A41N-01 19 50961883 50961883 G C MYBPC2 Missense_Mutation p.R793P 0.52 deleterious(0.02) probably_damaging(0.979) TCGA-KQ-A41N-01 19 53304192 53304192 T C ZNF28 Silent p.E302E 0.34 TCGA-KQ-A41N-01 19 55401192 55401192 G C FCAR Missense_Mutation p.G276A 0.37 tolerated(0.56) benign(0.368) TCGA-KQ-A41N-01 19 55597506 55597506 G A EPS8L1 Silent p.L532L 0.40 TCGA-KQ-A41N-01 19 6984759 6984759 A C EMR4P RNA 0.25 TCGA-KQ-A41N-01 1 104112458 104112458 C T AMY2B Intron 0.29 TCGA-KQ-A41N-01 1 11168326 11168326 C A MTOR Missense_Mutation p.D2516Y 0.08 deleterious(0.03) benign(0.123) TCGA-KQ-A41N-01 1 118598501 118598501 A G SPAG17 Silent p.D859D 0.29 TCGA-KQ-A41N-01 1 1325922 1325922 G A CCNL2 Missense_Mutation p.H261Y 0.23 tolerated(0.36) probably_damaging(0.998) TCGA-KQ-A41N-01 1 144859922 144859922 C T PDE4DIP Silent p.L2054L 0.13 TCGA-KQ-A41N-01 1 150064082 150064082 C T VPS45 Missense_Mutation p.R386C 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41N-01 1 150300915 150300915 C T PRPF3 Missense_Mutation p.T138I 0.41 deleterious(0.01) benign(0.382) TCGA-KQ-A41N-01 1 153516337 153516337 G C S100A4 Missense_Mutation p.N68K 0.25 tolerated(0.12) benign(0.001) TCGA-KQ-A41N-01 1 154988705 154988705 G T ZBTB7B Missense_Mutation p.K422N 0.32 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41N-01 1 156646373 156646373 G A NES Silent p.L228L 0.33 TCGA-KQ-A41N-01 1 161144908 161144908 G A B4GALT3 Missense_Mutation p.R122C 0.46 deleterious(0.02) possibly_damaging(0.893) TCGA-KQ-A41N-01 1 16736386 16736386 A T SPATA21 Missense_Mutation p.H99Q 0.46 tolerated(0.09) benign(0.139) TCGA-KQ-A41N-01 1 178871262 178871262 A T RALGPS2 Missense_Mutation p.N516Y 0.37 tolerated(0.1) benign(0.044) TCGA-KQ-A41N-01 1 179414151 179414151 C G AXDND1 Nonsense_Mutation p.S537* 0.35 TCGA-KQ-A41N-01 1 196977801 196977801 T C CFHR5 Silent p.P566P 0.43 TCGA-KQ-A41N-01 1 201981146 201981146 G A ELF3 Nonsense_Mutation p.W75* 0.50 TCGA-KQ-A41N-01 1 209933678 209933678 C G TRAF3IP3 Silent p.V98V 0.33 TCGA-KQ-A41N-01 1 214819583 214819583 G A CENPF Missense_Mutation p.G2224S 0.25 benign(0.067) TCGA-KQ-A41N-01 1 220331149 220331149 T G RAB3GAP2 Missense_Mutation p.M1111L 0.15 tolerated(0.24) benign(0.001) TCGA-KQ-A41N-01 1 238050713 238050713 C A ZP4 Silent p.L234L 0.46 TCGA-KQ-A41N-01 1 241951219 241951219 A G WDR64 Missense_Mutation p.Q915R 0.22 tolerated(0.37) benign(0.157) TCGA-KQ-A41N-01 1 242030318 242030318 C T EXO1 Missense_Mutation p.L410F 0.33 tolerated(0.07) benign(0.383) TCGA-KQ-A41N-01 1 32089280 32089280 A G HCRTR1 Missense_Mutation p.M299V 0.49 deleterious(0) probably_damaging(0.928) TCGA-KQ-A41N-01 1 33283002 33283002 C T YARS 5'UTR 0.44 TCGA-KQ-A41N-01 1 36640521 36640521 G A MAP7D1 Silent p.S254S 0.36 TCGA-KQ-A41N-01 1 40367114 40367114 C T MYCL Missense_Mutation p.G28E 0.28 tolerated(0.19) benign(0.316) TCGA-KQ-A41N-01 1 45481224 45481224 G A UROD 3'UTR 0.44 TCGA-KQ-A41N-01 1 51702410 51702410 C T RNF11 5'UTR 0.08 TCGA-KQ-A41N-01 1 52344114 52344114 A G NRD1 Silent p.S58S 0.39 TCGA-KQ-A41N-01 1 71532583 71532583 G C ZRANB2 Missense_Mutation p.P269A 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-KQ-A41N-01 1 82433819 82433819 G A LPHN2 Missense_Mutation p.R803Q 0.35 deleterious(0) benign(0.047) TCGA-KQ-A41N-01 1 89237127 89237127 G C PKN2 Missense_Mutation p.E216Q 0.43 deleterious(0) possibly_damaging(0.796) TCGA-KQ-A41N-01 20 2442430 2442430 G A SNRPB Missense_Mutation p.P232L 0.37 deleterious_low_confidence(0) unknown(0) TCGA-KQ-A41N-01 20 24994597 24994597 C G ACSS1 Missense_Mutation p.K484N 0.35 tolerated(0.33) benign(0.02) TCGA-KQ-A41N-01 20 270987 270987 C T C20orf96 Intron 0.27 TCGA-KQ-A41N-01 20 30753205 30753205 C A TM9SF4 Nonsense_Mutation p.Y629* 0.34 TCGA-KQ-A41N-01 20 33585327 33585327 G C MYH7B Missense_Mutation p.G1253R 0.38 possibly_damaging(0.682) TCGA-KQ-A41N-01 20 34219189 34219189 C G CPNE1 Splice_Site p.X272_splice 0.35 TCGA-KQ-A41N-01 20 34505408 34505408 G C PHF20 Missense_Mutation p.E610Q 0.23 deleterious(0.04) possibly_damaging(0.864) TCGA-KQ-A41N-01 20 43994277 43994277 C T SYS1 Missense_Mutation p.P61S 0.34 tolerated(0.43) benign(0.006) TCGA-KQ-A41N-01 20 44569553 44569553 C T PCIF1 Nonsense_Mutation p.Q165* 0.44 TCGA-KQ-A41N-01 20 55905017 55905017 A C SPO11 Silent p.R32R 0.33 TCGA-KQ-A41N-01 20 60509143 60509143 G T CDH4 Silent p.P803P 0.42 TCGA-KQ-A41N-01 20 60585143 60585143 G A TAF4 Missense_Mutation p.R574C 0.26 probably_damaging(0.988) TCGA-KQ-A41N-01 20 61513517 61513517 G A DIDO1 Missense_Mutation p.P1264L 0.36 probably_damaging(0.998) TCGA-KQ-A41N-01 20 62120422 62120422 C T EEF1A2 Silent p.K371K 0.33 TCGA-KQ-A41N-01 21 15554084 15554084 G C LIPI Missense_Mutation p.S234C 0.53 deleterious(0.01) possibly_damaging(0.785) TCGA-KQ-A41N-01 21 34113812 34113812 T C PAXBP1 Intron 0.32 TCGA-KQ-A41N-01 21 38390290 38390290 C T RIPPLY3 Missense_Mutation p.S119F 0.31 deleterious(0) possibly_damaging(0.557) TCGA-KQ-A41N-01 21 38463711 38463711 A C TTC3 Missense_Mutation p.E200A 0.60 tolerated(0.05) probably_damaging(0.979) TCGA-KQ-A41N-01 22 18897774 18897774 C T DGCR6 Nonsense_Mutation p.R121* 0.50 TCGA-KQ-A41N-01 22 18905876 18905876 C T PRODH Silent p.E460E 0.32 TCGA-KQ-A41N-01 22 31654274 31654274 C T LIMK2 Intron 0.52 TCGA-KQ-A41N-01 22 38201748 38201748 C T H1F0 Missense_Mutation p.S66L 0.41 tolerated(0.21) benign(0.153) TCGA-KQ-A41N-01 22 42273239 42273239 G - SREBF2 Frame_Shift_Del p.D465Mfs*13 0.31 TCGA-KQ-A41N-01 22 43089132 43089148 CGCCGCGGCAGGCGCGG - A4GALT Frame_Shift_Del p.R271Hfs*6 0.33 TCGA-KQ-A41N-01 22 49103650 49103650 C A FAM19A5 Silent p.T128T 0.34 TCGA-KQ-A41N-01 22 50304122 50304122 G A ALG12 Silent p.Y143Y 0.39 TCGA-KQ-A41N-01 2 105954034 105954034 T C C2orf49 5'UTR 0.42 TCGA-KQ-A41N-01 2 121555001 121555001 G T GLI2 Missense_Mutation p.L35F 0.41 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-KQ-A41N-01 2 136570089 136570089 A G LCT Silent p.H715H 0.38 TCGA-KQ-A41N-01 2 163369172 163369172 T C KCNH7 Missense_Mutation p.N302S 0.09 tolerated(0.57) benign(0.005) TCGA-KQ-A41N-01 2 169952320 169952320 C T DHRS9 3'UTR 0.50 TCGA-KQ-A41N-01 2 172700994 172700994 T A SLC25A12 Missense_Mutation p.Q117L 0.38 tolerated(0.24) benign(0.028) TCGA-KQ-A41N-01 2 17696579 17696579 A G RAD51AP2 Missense_Mutation p.I1035T 0.47 tolerated(0.56) benign(0) TCGA-KQ-A41N-01 2 179397901 179397901 G C TTN Missense_Mutation p.L34481V 0.32 TCGA-KQ-A41N-01 2 180008525 180008525 C A SESTD1 Nonsense_Mutation p.E215* 0.27 TCGA-KQ-A41N-01 2 190531675 190531675 T C ASNSD1 Missense_Mutation p.F273L 0.39 tolerated(0.52) benign(0.005) TCGA-KQ-A41N-01 2 196750948 196750948 G C DNAH7 Missense_Mutation p.L1819V 0.30 deleterious(0.04) possibly_damaging(0.495) TCGA-KQ-A41N-01 2 21234811 21234811 C A APOB Silent p.A1643A 0.40 TCGA-KQ-A41N-01 2 224463147 224463147 G T SCG2 Nonsense_Mutation p.S285* 0.11 TCGA-KQ-A41N-01 2 242178147 242178147 A G HDLBP Missense_Mutation p.M889T 0.39 deleterious(0) probably_damaging(0.964) TCGA-KQ-A41N-01 2 242813898 242813898 A T CXXC11 Missense_Mutation p.D64V 0.21 tolerated(0.09) benign(0.042) TCGA-KQ-A41N-01 2 37366800 37366800 G A EIF2AK2 Nonsense_Mutation p.Q164* 0.32 TCGA-KQ-A41N-01 2 54858669 54858670 AA - SPTBN1 Frame_Shift_Del p.N1163Sfs*23 0.31 TCGA-KQ-A41N-01 2 64083559 64083559 G T UGP2 Nonsense_Mutation p.E47* 0.43 TCGA-KQ-A41N-01 2 70092031 70092031 G T GMCL1 Splice_Site p.X381_splice 0.33 TCGA-KQ-A41N-01 2 73316295 73316295 T C RAB11FIP5 Missense_Mutation p.R194G 0.31 deleterious(0) benign(0.003) TCGA-KQ-A41N-01 2 84517912 84517912 G A FUNDC2P2 RNA 0.37 TCGA-KQ-A41N-01 3 10146367 10146367 T A FANCD2OS Missense_Mutation p.H31L 0.44 tolerated(0.06) benign(0.174) TCGA-KQ-A41N-01 3 119367224 119367224 G A POPDC2 Nonsense_Mutation p.Q298* 0.31 TCGA-KQ-A41N-01 3 123666120 123666120 G C CCDC14 Missense_Mutation p.T251R 0.36 deleterious(0.02) probably_damaging(0.934) TCGA-KQ-A41N-01 3 13438913 13438913 T A NUP210 Missense_Mutation p.E127V 0.33 tolerated(0.06) possibly_damaging(0.885) TCGA-KQ-A41N-01 3 141671821 141671821 T C TFDP2 Silent p.L363L 0.45 TCGA-KQ-A41N-01 3 148896413 148896413 G A CP Silent p.L889L 0.40 TCGA-KQ-A41N-01 3 149089639 149089639 G C TM4SF1 Silent p.T143T 0.50 TCGA-KQ-A41N-01 3 154146540 154146540 T C GPR149 Missense_Mutation p.R289G 0.36 tolerated(0.42) benign(0.013) TCGA-KQ-A41N-01 3 176769341 176769342 - T TBL1XR1 Frame_Shift_Ins p.N126Kfs*19 0.29 TCGA-KQ-A41N-01 3 178968691 178968691 C A KCNMB3 Nonsense_Mutation p.E34* 0.35 TCGA-KQ-A41N-01 3 184026761 184026761 C A PSMD2 3'UTR 0.40 TCGA-KQ-A41N-01 3 185251381 185251381 A G LIPH Silent p.D168D 0.26 TCGA-KQ-A41N-01 3 190120217 190120217 C A CLDN16 Missense_Mutation p.A139E 0.43 deleterious(0.02) possibly_damaging(0.516) TCGA-KQ-A41N-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.32 tolerated(0.19) possibly_damaging(0.569) TCGA-KQ-A41N-01 3 36873819 36873819 C T TRANK1 Missense_Mutation p.V2375M 0.29 tolerated(0.08) benign(0.185) TCGA-KQ-A41N-01 3 42568981 42568981 C T VIPR1 Silent p.L166L 0.38 TCGA-KQ-A41N-01 3 42826741 42826741 G C HIGD1A 3'Flank 0.22 TCGA-KQ-A41N-01 3 48697836 48697836 C A CELSR3 Silent p.V744V 0.35 TCGA-KQ-A41N-01 3 48698501 48698501 C T CELSR3 Missense_Mutation p.G523R 0.40 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 3 53842789 53842789 C A CACNA1D Missense_Mutation p.Q1975K 0.34 tolerated_low_confidence(0.07) probably_damaging(0.968) TCGA-KQ-A41N-01 3 57543210 57543210 C T PDE12 Silent p.F368F 0.44 TCGA-KQ-A41N-01 3 69220940 69220940 G A FRMD4B 3'UTR 0.49 TCGA-KQ-A41N-01 3 9757716 9757716 G A CPNE9 Missense_Mutation p.G294E 0.42 deleterious(0) benign(0.112) TCGA-KQ-A41N-01 3 9911689 9911689 G T CIDEC Missense_Mutation p.T154K 0.44 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41N-01 4 100518250 100518250 G A MTTP Silent p.R312R 0.32 TCGA-KQ-A41N-01 4 103571747 103571749 GGA - MANBA In_Frame_Del p.L605del 0.35 TCGA-KQ-A41N-01 4 106367566 106367566 T C PPA2 Missense_Mutation p.I139V 0.45 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41N-01 4 109088746 109088746 C G LEF1 Missense_Mutation p.E60Q 0.29 deleterious(0) possibly_damaging(0.546) TCGA-KQ-A41N-01 4 119026232 119026232 G T NDST3 Silent p.L347L 0.45 TCGA-KQ-A41N-01 4 119621745 119621745 C G METTL14 Nonsense_Mutation p.S229* 0.37 TCGA-KQ-A41N-01 4 119626811 119626811 G A METTL14 Missense_Mutation p.D301N 0.22 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41N-01 4 119626844 119626844 G A METTL14 Missense_Mutation p.D312N 0.35 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41N-01 4 144136132 144136132 A T USP38 Intron 0.32 TCGA-KQ-A41N-01 4 148552573 148552573 T A TMEM184C Nonsense_Mutation p.Y232* 0.42 TCGA-KQ-A41N-01 4 16019981 16019981 G C PROM1 Missense_Mutation p.L323V 0.36 deleterious(0) probably_damaging(0.991) TCGA-KQ-A41N-01 4 16020042 16020042 G C PROM1 Silent p.L302L 0.27 TCGA-KQ-A41N-01 4 1725503 1725503 A T TACC3 Missense_Mutation p.S71C 0.36 deleterious(0) probably_damaging(0.99) TCGA-KQ-A41N-01 4 175899041 175899041 C T ADAM29 Nonsense_Mutation p.Q789* 0.47 TCGA-KQ-A41N-01 4 22449094 22449094 T C GPR125 Missense_Mutation p.T172A 0.41 deleterious(0.01) possibly_damaging(0.63) TCGA-KQ-A41N-01 4 38037276 38037276 A G TBC1D1 Missense_Mutation p.E457G 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-KQ-A41N-01 4 39507352 39507352 T G UGDH Missense_Mutation p.D308A 0.23 deleterious(0.01) benign(0.268) TCGA-KQ-A41N-01 4 39507353 39507353 C A UGDH Missense_Mutation p.D308Y 0.23 deleterious(0) probably_damaging(0.926) TCGA-KQ-A41N-01 4 42457570 42457570 T A ATP8A1 Missense_Mutation p.E889V 0.44 deleterious(0) benign(0.012) TCGA-KQ-A41N-01 4 48037007 48037007 G A NIPAL1 Missense_Mutation p.E191K 0.46 deleterious(0.01) benign(0.133) TCGA-KQ-A41N-01 4 48852065 48852065 C T OCIAD1 Nonsense_Mutation p.R115* 0.39 TCGA-KQ-A41N-01 4 70464968 70464968 G T UGT2A1 Missense_Mutation p.P497H 0.10 deleterious(0) possibly_damaging(0.464) TCGA-KQ-A41N-01 4 7668850 7668850 G T SORCS2 Splice_Site p.X358_splice 0.48 TCGA-KQ-A41N-01 4 77661005 77661005 G T SHROOM3 Missense_Mutation p.C560F 0.43 tolerated(0.64) benign(0) TCGA-KQ-A41N-01 5 101631717 101631717 C T SLCO4C1 Missense_Mutation p.E84K 0.80 tolerated(0.21) benign(0.004) TCGA-KQ-A41N-01 5 112214496 112214496 T C REEP5 Missense_Mutation p.K186R 0.72 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-KQ-A41N-01 5 138855922 138855922 G A TMEM173 Missense_Mutation p.S355F 0.55 deleterious(0) possibly_damaging(0.857) TCGA-KQ-A41N-01 5 141324964 141324964 G A PCDH12 Silent p.S1179S 0.67 TCGA-KQ-A41N-01 5 156754996 156754996 G T CYFIP2 Missense_Mutation p.D673Y 0.19 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 5 167988434 167988434 G A PANK3 Silent p.N300N 0.53 TCGA-KQ-A41N-01 5 176637349 176637349 A G NSD1 Missense_Mutation p.D650G 0.61 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-KQ-A41N-01 5 40681629 40681629 G A PTGER4 Silent p.V178V 0.29 TCGA-KQ-A41N-01 5 54442574 54442574 T C CDC20B Silent p.Q79Q 0.46 TCGA-KQ-A41N-01 5 94803602 94803602 A G TTC37 Silent p.L1530L 0.50 TCGA-KQ-A41N-01 6 10430166 10430166 G A LINC00518 RNA 0.56 TCGA-KQ-A41N-01 6 11213600 11213600 C G NEDD9 Missense_Mutation p.G125R 0.37 deleterious(0.05) benign(0.371) TCGA-KQ-A41N-01 6 12122275 12122275 G A HIVEP1 Silent p.S749S 0.32 TCGA-KQ-A41N-01 6 131995467 131995467 C T ENPP3 Intron 0.73 TCGA-KQ-A41N-01 6 160199649 160199649 C G TCP1 3'UTR 0.64 TCGA-KQ-A41N-01 6 160898312 160898312 C T LPAL2 RNA 0.45 TCGA-KQ-A41N-01 6 31922639 31922639 T A NELFE Missense_Mutation p.E145D 0.27 tolerated(0.52) benign(0.01) TCGA-KQ-A41N-01 6 43019971 43019971 G T CUL7 Missense_Mutation p.Q238K 0.25 deleterious(0.01) possibly_damaging(0.771) TCGA-KQ-A41N-01 6 43188499 43188499 C G CUL9 Silent p.L2146L 0.37 TCGA-KQ-A41N-01 6 46977668 46977668 G A GPR110 Silent p.V501V 0.43 TCGA-KQ-A41N-01 6 51824725 51824725 C T PKHD1 Missense_Mutation p.G1951S 0.38 deleterious(0.03) possibly_damaging(0.887) TCGA-KQ-A41N-01 6 74189702 74189702 C A MTO1 Missense_Mutation p.R328S 0.40 deleterious(0.03) probably_damaging(0.992) TCGA-KQ-A41N-01 6 90605506 90605506 A T GJA10 Missense_Mutation p.K440M 0.64 deleterious(0) probably_damaging(0.935) TCGA-KQ-A41N-01 7 107732071 107732071 C G LAMB4 Missense_Mutation p.L567F 0.36 deleterious(0.04) benign(0.063) TCGA-KQ-A41N-01 7 117864772 117864772 C A ANKRD7 5'UTR 0.33 TCGA-KQ-A41N-01 7 120979020 120979020 C G WNT16 Missense_Mutation p.S240C 0.25 deleterious(0) possibly_damaging(0.886) TCGA-KQ-A41N-01 7 129906752 129906752 G A CPA2 Missense_Mutation p.A11T 0.36 tolerated(0.15) benign(0.033) TCGA-KQ-A41N-01 7 150163812 150163812 C G GIMAP8 Missense_Mutation p.S9C 0.17 tolerated(0.06) possibly_damaging(0.789) TCGA-KQ-A41N-01 7 150747316 150747316 G A ASIC3 Missense_Mutation p.E220K 0.36 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41N-01 7 151900069 151900069 A G KMT2C Missense_Mutation p.Y1348H 0.45 probably_damaging(0.999) TCGA-KQ-A41N-01 7 1527549 1527549 C T INTS1 Missense_Mutation p.R788Q 0.19 tolerated(0.55) benign(0.03) TCGA-KQ-A41N-01 7 1855851 1855851 G A MAD1L1 Missense_Mutation p.S671L 0.36 tolerated(0.07) possibly_damaging(0.509) TCGA-KQ-A41N-01 7 23212628 23212628 G C KLHL7 Missense_Mutation p.D481H 0.27 deleterious(0.02) possibly_damaging(0.468) TCGA-KQ-A41N-01 7 23313746 23313746 T G GPNMB Missense_Mutation p.L541R 0.35 deleterious(0.02) probably_damaging(0.98) TCGA-KQ-A41N-01 7 27150331 27150331 C G HOXA3 5'UTR 0.39 TCGA-KQ-A41N-01 7 57528796 57528799 AGAA - ZNF716 Frame_Shift_Del p.E210Gfs*134 0.53 TCGA-KQ-A41N-01 7 73153123 73153123 C T ABHD11 Missense_Mutation p.R2Q 0.62 deleterious_low_confidence(0) benign(0.031) TCGA-KQ-A41N-01 7 88847591 88847591 T G ZNF804B Nonsense_Mutation p.Y77* 0.19 TCGA-KQ-A41N-01 7 91875759 91875759 G A ANKIB1 5'UTR 0.33 TCGA-KQ-A41N-01 7 92404013 92404013 T C CDK6 Missense_Mutation p.I122M 0.39 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41N-01 8 101154370 101154370 T A FBXO43 Missense_Mutation p.R38W 0.09 deleterious(0) possibly_damaging(0.89) TCGA-KQ-A41N-01 8 144621405 144621424 GTAAGTGGGTGGCTGCCACC - ZC3H3 Frame_Shift_Del p.G38Afs*7 0.22 TCGA-KQ-A41N-01 8 145537210 145537210 G A HSF1 Missense_Mutation p.D386N 0.15 tolerated(0.05) benign(0.362) TCGA-KQ-A41N-01 8 20110614 20110614 G A LZTS1 Silent p.A276A 0.65 TCGA-KQ-A41N-01 8 21844747 21844747 G A XPO7 Missense_Mutation p.R558H 0.59 deleterious(0) probably_damaging(0.991) TCGA-KQ-A41N-01 8 27097538 27097538 C T STMN4 Missense_Mutation p.E181K 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-KQ-A41N-01 8 38196111 38196111 C G WHSC1L1 Missense_Mutation p.R230S 0.18 tolerated(0.72) benign(0.146) TCGA-KQ-A41N-01 8 48772246 48772246 A T PRKDC Missense_Mutation p.F2044I 0.62 probably_damaging(0.944) TCGA-KQ-A41N-01 8 82195645 82195645 G A FABP5 Missense_Mutation p.D42N 0.22 tolerated(0.42) possibly_damaging(0.46) TCGA-KQ-A41N-01 9 114246684 114246684 G C KIAA0368 Missense_Mutation p.R77G 0.55 tolerated_low_confidence(0.15) unknown(0) TCGA-KQ-A41N-01 9 116811823 116811823 C G ZNF618 Missense_Mutation p.I654M 0.27 tolerated(0.06) possibly_damaging(0.77) TCGA-KQ-A41N-01 9 125642584 125642584 A C RC3H2 Intron 0.33 TCGA-KQ-A41N-01 9 127998871 127998871 C T HSPA5 Silent p.%3D 0.31 TCGA-KQ-A41N-01 9 130420710 130420710 C G STXBP1 Missense_Mutation p.L76V 0.39 deleterious(0.01) possibly_damaging(0.475) TCGA-KQ-A41N-01 9 130863670 130863670 C G SLC25A25 Silent p.L157L 0.33 TCGA-KQ-A41N-01 9 2110374 2110374 C T SMARCA2 Missense_Mutation p.A1138V 0.24 possibly_damaging(0.787) TCGA-KQ-A41N-01 9 21334469 21334469 G A KLHL9 Silent p.S130S 0.40 TCGA-KQ-A41N-01 9 33056170 33056170 C A SMU1 Missense_Mutation p.A355S 0.28 deleterious(0.01) possibly_damaging(0.72) TCGA-KQ-A41N-01 9 36170177 36170177 T A CCIN Missense_Mutation p.N226K 0.33 tolerated(0.94) benign(0.015) TCGA-KQ-A41N-01 9 73152049 73152049 A G TRPM3 Missense_Mutation p.I1315T 0.09 tolerated_low_confidence(0.35) benign(0.028) TCGA-KQ-A41N-01 9 88272541 88272541 C A AGTPBP1 Missense_Mutation p.A240S 0.14 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41N-01 9 97200686 97200686 C G HIATL1 Missense_Mutation p.L91V 0.39 deleterious(0.02) possibly_damaging(0.457) TCGA-KQ-A41N-01 X 101912428 101912428 G A GPRASP1 Missense_Mutation p.G1196D 0.55 deleterious(0) probably_damaging(1) TCGA-KQ-A41N-01 X 117527216 117527216 A G WDR44 Missense_Mutation p.K270E 0.69 tolerated(0.16) benign(0.206) TCGA-KQ-A41N-01 X 129208563 129208564 - A ELF4 Frame_Shift_Ins p.L80Ffs*5 0.39 TCGA-KQ-A41N-01 X 130678905 130678905 C T OR13H1 Silent p.P286P 0.67 TCGA-KQ-A41N-01 X 32466742 32466742 T G DMD Missense_Mutation p.E1206A 0.59 benign(0.001) TCGA-KQ-A41N-01 X 38128879 38128879 T C TM4SF2 Intron 0.83 TCGA-KQ-A41N-01 X 91642793 91642793 T A PCDH11X Silent p.G1068G 0.70 TCGA-KQ-A41N-01 Y 15591141 15591141 A G UTY Missense_Mutation p.L70P 0.80 deleterious(0) possibly_damaging(0.62) TCGA-KQ-A41O-01 10 12070788 12070788 C A UPF2 Silent p.L367L 0.68 TCGA-KQ-A41O-01 10 133930628 133930628 C T JAKMIP3 Silent p.R61R 0.31 TCGA-KQ-A41O-01 10 135122951 135122951 G A ZNF511 Missense_Mutation p.V71M 0.40 tolerated(0.1) benign(0.091) TCGA-KQ-A41O-01 10 23399216 23399216 C G MSRB2 Missense_Mutation p.H89D 0.87 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41O-01 10 52390205 52390205 G A RP11-50E11.3 RNA 0.67 TCGA-KQ-A41O-01 10 61832367 61832367 C T ANK3 Missense_Mutation p.V2758I 0.36 benign(0.001) TCGA-KQ-A41O-01 10 69970181 69970181 C G MYPN Missense_Mutation p.S1311C 0.31 deleterious(0.01) possibly_damaging(0.572) TCGA-KQ-A41O-01 10 73051481 73051481 C T UNC5B Silent p.L529L 0.29 TCGA-KQ-A41O-01 10 73206112 73206112 C A CDH23 Missense_Mutation p.F35L 0.64 tolerated(0.16) possibly_damaging(0.885) TCGA-KQ-A41O-01 10 74896561 74896561 C A ECD Silent p.L568L 0.30 TCGA-KQ-A41O-01 10 90982335 90982335 C G LIPA Missense_Mutation p.R276T 0.57 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41O-01 10 95276918 95276918 G A CEP55 Silent p.E302E 0.29 TCGA-KQ-A41O-01 10 99426856 99426856 G C PI4K2A Missense_Mutation p.Q389H 0.60 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41O-01 11 123848195 123848195 G A OR10S1 Silent p.L68L 0.54 TCGA-KQ-A41O-01 11 134014198 134014198 C T JAM3 Missense_Mutation p.R107W 0.27 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 11 27360410 27360410 C G CCDC34 Missense_Mutation p.R360S 0.95 deleterious(0.02) benign(0.01) TCGA-KQ-A41O-01 11 57068006 57068006 G A TNKS1BP1 3'UTR 0.94 TCGA-KQ-A41O-01 11 62361403 62361403 G C MTA2 Missense_Mutation p.L651V 0.98 tolerated_low_confidence(0.37) benign(0.001) TCGA-KQ-A41O-01 11 64812123 64812123 G A SAC3D1 Missense_Mutation p.R334Q 0.35 tolerated(0.45) benign(0.001) TCGA-KQ-A41O-01 11 69063528 69063528 G C MYEOV Missense_Mutation p.R204P 0.80 tolerated_low_confidence(0.31) benign(0.111) TCGA-KQ-A41O-01 11 77336056 77336056 C T CLNS1A Missense_Mutation p.E142K 0.57 tolerated(0.18) benign(0.278) TCGA-KQ-A41O-01 11 84028189 84028189 A T DLG2 Intron 0.26 TCGA-KQ-A41O-01 12 110230583 110230583 G C TRPV4 Silent p.L566L 0.40 TCGA-KQ-A41O-01 12 110386639 110386639 C G GIT2 Intron 0.40 TCGA-KQ-A41O-01 12 113596765 113596765 G A DDX54 Missense_Mutation p.R856C 0.26 deleterious(0) probably_damaging(0.977) TCGA-KQ-A41O-01 12 114400181 114400181 G A RBM19 Silent p.F25F 0.51 TCGA-KQ-A41O-01 12 118471947 118471947 C G WSB2 3'UTR 0.44 TCGA-KQ-A41O-01 12 129563260 129563260 G T TMEM132D Missense_Mutation p.P645H 0.29 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 12 30862784 30862784 C G CAPRIN2 3'UTR 0.49 TCGA-KQ-A41O-01 12 32866186 32866186 G C DNM1L Missense_Mutation p.R167T 0.47 deleterious(0.02) possibly_damaging(0.595) TCGA-KQ-A41O-01 12 39751077 39751077 G C KIF21A Missense_Mutation p.Q460E 0.45 tolerated(0.78) probably_damaging(0.983) TCGA-KQ-A41O-01 12 39998664 39998664 T A ABCD2 Missense_Mutation p.R435S 0.21 tolerated(0.34) benign(0.002) TCGA-KQ-A41O-01 12 48135293 48135293 C T RAPGEF3 Missense_Mutation p.E640K 0.38 tolerated(0.44) benign(0) TCGA-KQ-A41O-01 12 49943357 49943357 C T KCNH3 Silent p.L534L 0.55 TCGA-KQ-A41O-01 12 54967206 54967206 C T PDE1B Nonsense_Mutation p.R302* 0.48 TCGA-KQ-A41O-01 12 57346720 57346720 G C RDH16 Missense_Mutation p.F209L 0.45 deleterious(0) benign(0.32) TCGA-KQ-A41O-01 12 57619479 57619479 G C NXPH4 Missense_Mutation p.Q292H 0.43 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41O-01 12 88472968 88472968 C G CEP290 Missense_Mutation p.M1755I 0.58 benign(0.441) TCGA-KQ-A41O-01 13 103518675 103518675 C G BIVM-ERCC5 Missense_Mutation p.Q1181E 0.70 deleterious(0.01) possibly_damaging(0.764) TCGA-KQ-A41O-01 13 23915196 23915196 G C SACS Missense_Mutation p.S940C 0.30 possibly_damaging(0.541) TCGA-KQ-A41O-01 13 31725302 31725302 G C HSPH1 Missense_Mutation p.F230L 0.09 tolerated(0.49) benign(0.034) TCGA-KQ-A41O-01 13 37580265 37580265 C T EXOSC8 Nonsense_Mutation p.Q120* 0.18 TCGA-KQ-A41O-01 13 39587805 39587805 C T PROSER1 Silent p.Q528Q 0.49 TCGA-KQ-A41O-01 13 41635769 41635769 G C WBP4 5'UTR 0.15 TCGA-KQ-A41O-01 13 79942973 79942973 G C RBM26 Missense_Mutation p.H263D 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-KQ-A41O-01 14 100363585 100363585 G C EML1 Missense_Mutation p.E280Q 0.71 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41O-01 14 104040450 104040450 G C RP11-73M18.2 Missense_Mutation p.E123Q 0.61 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-KQ-A41O-01 14 105643069 105643069 G C NUDT14 Missense_Mutation p.S77C 0.61 tolerated(0.13) benign(0.051) TCGA-KQ-A41O-01 14 19990599 19990599 C T POTEM Silent p.E492E 0.10 TCGA-KQ-A41O-01 14 21929395 21929395 C T RAB2B Missense_Mutation p.R204Q 0.52 tolerated(0.73) benign(0) TCGA-KQ-A41O-01 14 23522883 23522883 G A CDH24 Silent p.L350L 0.40 TCGA-KQ-A41O-01 14 24619440 24619440 G A RNF31 Missense_Mutation p.R327Q 0.56 deleterious(0) possibly_damaging(0.559) TCGA-KQ-A41O-01 14 24709252 24709252 C T TINF2 Intron 0.58 TCGA-KQ-A41O-01 14 75130680 75130680 C G AREL1 Missense_Mutation p.G764A 0.70 tolerated(0.05) probably_damaging(0.999) TCGA-KQ-A41O-01 14 75131623 75131623 C G AREL1 Silent p.L703L 0.71 TCGA-KQ-A41O-01 15 101550937 101550937 G C LRRK1 Missense_Mutation p.L392F 0.48 deleterious(0) probably_damaging(0.984) TCGA-KQ-A41O-01 15 59376398 59376398 C T RNF111 Missense_Mutation p.H799Y 0.42 deleterious(0) probably_damaging(0.98) TCGA-KQ-A41O-01 15 59376407 59376407 C T RNF111 Nonsense_Mutation p.Q802* 0.47 TCGA-KQ-A41O-01 15 65421479 65421479 G A PDCD7 Silent p.G300G 0.43 TCGA-KQ-A41O-01 15 74921349 74921349 G A CLK3 Silent p.V572V 0.53 TCGA-KQ-A41O-01 15 77471208 77471208 C G PEAK1 Missense_Mutation p.E1021Q 0.55 tolerated(0.22) benign(0.006) TCGA-KQ-A41O-01 15 78633520 78633520 G A CRABP1 Missense_Mutation p.G69E 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-KQ-A41O-01 15 86260627 86260627 G A AKAP13 Missense_Mutation p.D1952N 0.51 deleterious(0) probably_damaging(0.981) TCGA-KQ-A41O-01 15 86807844 86807844 C G AGBL1 Missense_Mutation p.S435C 0.50 deleterious(0.05) possibly_damaging(0.619) TCGA-KQ-A41O-01 15 89393004 89393004 G C ACAN Intron 0.70 TCGA-KQ-A41O-01 15 91424800 91424800 C T FURIN Missense_Mutation p.R693W 0.41 deleterious(0.02) benign(0.083) TCGA-KQ-A41O-01 16 14978247 14978247 G A NOMO1 Missense_Mutation p.D1044N 0.60 tolerated(0.14) benign(0.051) TCGA-KQ-A41O-01 16 19195316 19195316 C T SYT17 Silent p.F266F 0.36 TCGA-KQ-A41O-01 16 2159522 2159522 C A PKD1 Silent p.T1882T 0.43 TCGA-KQ-A41O-01 16 30390336 30390336 C A SEPT1 Intron 0.42 TCGA-KQ-A41O-01 16 30762897 30762897 C G PHKG2 Missense_Mutation p.S100C 0.32 deleterious(0.02) possibly_damaging(0.485) TCGA-KQ-A41O-01 16 3613705 3613705 C T NLRC3 Silent p.K458K 0.60 TCGA-KQ-A41O-01 16 61687520 61687520 C G CDH8 Missense_Mutation p.E798Q 0.62 deleterious(0.05) benign(0.097) TCGA-KQ-A41O-01 16 68265592 68265592 C G ESRP2 Missense_Mutation p.L435F 0.48 deleterious(0) possibly_damaging(0.807) TCGA-KQ-A41O-01 16 70590928 70590928 T A SF3B3 Missense_Mutation p.L669Q 0.64 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 16 74445607 74445607 G A CLEC18B Missense_Mutation p.S315L 0.14 deleterious_low_confidence(0.05) possibly_damaging(0.833) TCGA-KQ-A41O-01 16 780560 780560 C T NARFL Missense_Mutation p.E430K 0.60 tolerated(0.51) benign(0.013) TCGA-KQ-A41O-01 17 28418927 28418927 C G EFCAB5 Missense_Mutation p.L1326V 0.23 deleterious(0) possibly_damaging(0.799) TCGA-KQ-A41O-01 17 28418977 28418977 C G EFCAB5 Silent p.L1342L 0.21 TCGA-KQ-A41O-01 17 28770986 28770986 G A CPD Missense_Mutation p.R847Q 0.77 tolerated(0.45) benign(0.004) TCGA-KQ-A41O-01 17 33454292 33454292 G A FNDC8 Silent p.Q147Q 0.23 TCGA-KQ-A41O-01 17 36104669 36104669 G A HNF1B Silent p.H69H 0.72 TCGA-KQ-A41O-01 17 3801326 3801326 C T P2RX1 Missense_Mutation p.A371T 0.96 tolerated(0.38) possibly_damaging(0.784) TCGA-KQ-A41O-01 17 39190875 39190875 C G KRTAP1-3 Missense_Mutation p.E67Q 0.75 tolerated(0.86) unknown(0) TCGA-KQ-A41O-01 17 39340732 39340732 G C KRTAP4-1 Silent p.L125L 0.20 TCGA-KQ-A41O-01 17 40722088 40722088 C G MLX Missense_Mutation p.Q243E 0.73 deleterious(0.01) probably_damaging(0.989) TCGA-KQ-A41O-01 17 41584414 41584414 G C DHX8 Missense_Mutation p.G591A 0.63 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 17 42336708 42336708 G A SLC4A1 Silent p.R233R 0.71 TCGA-KQ-A41O-01 17 4620511 4620511 G C ARRB2 Splice_Site p.X141_splice 0.96 TCGA-KQ-A41O-01 17 62025998 62025998 G A SCN4A Silent p.F1039F 0.69 TCGA-KQ-A41O-01 17 66447039 66447039 C G WIPI1 Splice_Site p.X55_splice 0.75 TCGA-KQ-A41O-01 17 74733166 74733166 G T SRSF2 Nonsense_Mutation p.S26* 0.23 TCGA-KQ-A41O-01 17 74734288 74734288 G A MFSD11 5'UTR 0.31 TCGA-KQ-A41O-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.92 deleterious(0.04) possibly_damaging(0.83) TCGA-KQ-A41O-01 17 76490792 76490792 C G DNAH17 Silent p.L2037L 0.28 TCGA-KQ-A41O-01 17 7804619 7804619 G C CHD3 Missense_Mutation p.G1119R 1.00 probably_damaging(0.953) TCGA-KQ-A41O-01 17 79805199 79805199 C T P4HB Missense_Mutation p.E217K 0.75 deleterious(0.04) benign(0.061) TCGA-KQ-A41O-01 17 79891180 79891180 C T PYCR1 Silent p.V290V 0.32 TCGA-KQ-A41O-01 17 80606167 80606167 C A WDR45B Missense_Mutation p.G17V 0.65 deleterious(0) possibly_damaging(0.781) TCGA-KQ-A41O-01 17 9143222 9143222 G A NTN1 Silent p.T584T 0.89 TCGA-KQ-A41O-01 18 33267148 33267148 C G GALNT1 Silent p.V286V 0.59 TCGA-KQ-A41O-01 18 42530641 42530641 G A SETBP1 Missense_Mutation p.E446K 0.44 tolerated(0.15) benign(0.342) TCGA-KQ-A41O-01 18 43531166 43531166 G C EPG5 Missense_Mutation p.Q431E 0.52 tolerated(0.44) benign(0.015) TCGA-KQ-A41O-01 18 45368211 45368211 G C SMAD2 Nonsense_Mutation p.S464* 0.41 TCGA-KQ-A41O-01 18 52896267 52896267 C T TCF4 Missense_Mutation p.E666K 0.47 deleterious(0.01) possibly_damaging(0.682) TCGA-KQ-A41O-01 18 54361959 54361959 C G WDR7 Nonsense_Mutation p.S359* 0.50 TCGA-KQ-A41O-01 18 56892801 56892801 G C GRP Missense_Mutation p.E73Q 0.54 tolerated(0.21) benign(0.039) TCGA-KQ-A41O-01 18 56892849 56892849 G T GRP Nonsense_Mutation p.E89* 0.49 TCGA-KQ-A41O-01 18 56892858 56892858 G C GRP Missense_Mutation p.E92Q 0.46 tolerated(0.17) benign(0.201) TCGA-KQ-A41O-01 18 59712947 59712947 C G PIGN 3'UTR 0.62 TCGA-KQ-A41O-01 18 675395 675395 C T ENOSF1 Missense_Mutation p.E393K 0.54 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 19 10445261 10445261 G C ICAM3 Missense_Mutation p.L379V 0.49 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41O-01 19 10445375 10445375 G C ICAM3 Missense_Mutation p.R341G 0.49 tolerated(0.59) possibly_damaging(0.873) TCGA-KQ-A41O-01 19 1360222 1360222 G A MUM1 Missense_Mutation p.G102D 0.42 tolerated(0.09) benign(0.217) TCGA-KQ-A41O-01 19 19453410 19453410 G A MAU2 Missense_Mutation p.D268N 0.56 deleterious(0.01) benign(0.03) TCGA-KQ-A41O-01 19 2989724 2989724 C T TLE6 Silent p.F395F 0.48 TCGA-KQ-A41O-01 19 35448986 35448986 C T ZNF792 Silent p.E591E 0.35 TCGA-KQ-A41O-01 19 36036644 36036644 G A TMEM147 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.991) TCGA-KQ-A41O-01 19 39023323 39023323 G A RYR1 Missense_Mutation p.E3736K 0.30 benign(0.064) TCGA-KQ-A41O-01 19 40480226 40480226 G C PSMC4 Silent p.L116L 0.26 TCGA-KQ-A41O-01 19 44660861 44660861 C T ZNF234 Missense_Mutation p.P231L 0.20 tolerated(0.09) probably_damaging(1) TCGA-KQ-A41O-01 19 4529042 4529042 C T PLIN5 Intron 0.26 TCGA-KQ-A41O-01 19 48908572 48908572 C T GRIN2D Silent p.R349R 0.30 TCGA-KQ-A41O-01 19 49519079 49519079 G A RUVBL2 Missense_Mutation p.E458K 0.22 tolerated_low_confidence(0.13) benign(0.001) TCGA-KQ-A41O-01 19 49610903 49610903 G A SNRNP70 Missense_Mutation p.R200K 0.33 deleterious(0.03) possibly_damaging(0.692) TCGA-KQ-A41O-01 19 50862997 50862997 C T NAPSA Missense_Mutation p.R264H 0.39 tolerated(0.08) benign(0.243) TCGA-KQ-A41O-01 19 50945442 50945442 C T MYBPC2 Silent p.F258F 0.50 TCGA-KQ-A41O-01 19 50964951 50964951 C T MYBPC2 Silent p.L1028L 0.41 TCGA-KQ-A41O-01 19 52034702 52034702 C T SIGLEC6 Missense_Mutation p.V47I 0.51 tolerated(0.05) benign(0.418) TCGA-KQ-A41O-01 19 54418653 54418653 C T CACNG7 Silent p.V106V 0.40 TCGA-KQ-A41O-01 19 55445985 55445985 G A NLRP7 Silent p.F781F 0.58 TCGA-KQ-A41O-01 19 55525588 55525588 C G GP6 Silent p.L575L 0.38 TCGA-KQ-A41O-01 19 55653236 55653236 C T TNNT1 Missense_Mutation p.V61I 0.58 deleterious(0.03) probably_damaging(0.993) TCGA-KQ-A41O-01 19 58579139 58579139 G C ZNF135 Silent p.R453R 0.40 TCGA-KQ-A41O-01 19 5994940 5994940 C T RFX2 Missense_Mutation p.R693H 0.20 tolerated(0.41) benign(0.003) TCGA-KQ-A41O-01 19 6177377 6177377 C G ACSBG2 Silent p.L292L 0.43 TCGA-KQ-A41O-01 19 7621349 7621349 C T PNPLA6 Missense_Mutation p.S1045L 0.56 deleterious(0) probably_damaging(0.934) TCGA-KQ-A41O-01 19 9213429 9213429 A G OR7G2 Missense_Mutation p.L185S 0.11 deleterious(0.02) possibly_damaging(0.74) TCGA-KQ-A41O-01 1 109812366 109812366 G A CELSR2 Missense_Mutation p.R2344H 0.22 tolerated(0.05) probably_damaging(0.997) TCGA-KQ-A41O-01 1 114438430 114438430 C A AP4B1 Missense_Mutation p.A581S 0.20 tolerated(0.69) benign(0.001) TCGA-KQ-A41O-01 1 116937844 116937844 G C ATP1A1 Missense_Mutation p.M591I 0.45 deleterious(0.01) benign(0.193) TCGA-KQ-A41O-01 1 117150619 117150619 G T IGSF3 Missense_Mutation p.F389L 0.38 tolerated(0.09) benign(0.168) TCGA-KQ-A41O-01 1 14106500 14106500 C T PRDM2 Missense_Mutation p.T737I 0.38 probably_damaging(0.994) TCGA-KQ-A41O-01 1 144994657 144994657 G T PDE4DIP Silent p.R25R 0.12 TCGA-KQ-A41O-01 1 151315210 151315211 CA - RFX5 Frame_Shift_Del p.E435Sfs*5 0.21 TCGA-KQ-A41O-01 1 155718046 155718046 C G GON4L 3'Flank 0.40 TCGA-KQ-A41O-01 1 156287319 156287319 C T CCT3 Missense_Mutation p.R260Q 0.24 tolerated(0.16) benign(0.006) TCGA-KQ-A41O-01 1 159277733 159277733 C G FCER1A 3'UTR 0.57 TCGA-KQ-A41O-01 1 15986346 15986346 G C DDI2 3'UTR 0.47 TCGA-KQ-A41O-01 1 15986567 15986567 G C RSC1A1 Missense_Mutation p.K68N 0.50 tolerated(0.08) benign(0.167) TCGA-KQ-A41O-01 1 161495768 161495768 C G HSPA6 Silent p.V440V 0.32 TCGA-KQ-A41O-01 1 16477416 16477416 C T EPHA2 Nonsense_Mutation p.W43* 0.43 TCGA-KQ-A41O-01 1 17557171 17557171 C A PADI1 Silent p.I386I 0.25 TCGA-KQ-A41O-01 1 201332576 201332576 G C TNNT2 Intron 0.55 TCGA-KQ-A41O-01 1 201982128 201982129 - A ELF3 Frame_Shift_Ins p.D218Efs*6 0.33 TCGA-KQ-A41O-01 1 205031622 205031622 G A CNTN2 Missense_Mutation p.D389N 0.55 tolerated(0.1) possibly_damaging(0.896) TCGA-KQ-A41O-01 1 205290726 205290726 C G NUAK2 Missense_Mutation p.G11R 0.46 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-KQ-A41O-01 1 212002794 212002794 C G LPGAT1 Intron 0.44 TCGA-KQ-A41O-01 1 212180757 212180757 C A INTS7 Missense_Mutation p.L197F 0.17 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41O-01 1 215901489 215901489 C T USH2A Silent p.L3983L 0.55 TCGA-KQ-A41O-01 1 22204974 22204974 C T HSPG2 Missense_Mutation p.G857R 0.43 probably_damaging(1) TCGA-KQ-A41O-01 1 223989881 223989881 C T TP53BP2 Missense_Mutation p.E388K 0.52 tolerated(0.21) benign(0.242) TCGA-KQ-A41O-01 1 228246896 228246896 C A WNT3A Missense_Mutation p.F263L 0.54 deleterious(0.01) benign(0.262) TCGA-KQ-A41O-01 1 229773663 229773663 C A URB2 Silent p.L1101L 0.51 TCGA-KQ-A41O-01 1 237755088 237755088 A T RYR2 Nonsense_Mutation p.R1404* 0.32 TCGA-KQ-A41O-01 1 23857244 23857244 C T E2F2 Silent p.Q14Q 0.38 TCGA-KQ-A41O-01 1 243349110 243349110 C T CEP170 Missense_Mutation p.E513K 0.41 tolerated(0.06) probably_damaging(0.998) TCGA-KQ-A41O-01 1 32256710 32256710 G C SPOCD1 Missense_Mutation p.Q1049E 0.45 deleterious(0.02) benign(0.104) TCGA-KQ-A41O-01 1 32256755 32256755 G C SPOCD1 Missense_Mutation p.Q1034E 0.47 tolerated(0.07) benign(0.074) TCGA-KQ-A41O-01 1 33480132 33480132 C T AK2 Missense_Mutation p.M163I 0.44 tolerated(0.1) possibly_damaging(0.591) TCGA-KQ-A41O-01 1 36359312 36359312 G C AGO1 Missense_Mutation p.E184Q 0.52 tolerated(0.56) probably_damaging(0.999) TCGA-KQ-A41O-01 1 3731985 3731985 C T CEP104 Missense_Mutation p.R920K 0.53 tolerated_low_confidence(0.44) benign(0.084) TCGA-KQ-A41O-01 1 52303166 52303166 C T NRD1 Missense_Mutation p.E253K 0.39 tolerated_low_confidence(0.74) benign(0.002) TCGA-KQ-A41O-01 1 53555696 53555696 G A SLC1A7 Intron 0.50 TCGA-KQ-A41O-01 1 62703978 62703978 C T KANK4 Missense_Mutation p.A987T 0.08 tolerated(0.2) benign(0.057) TCGA-KQ-A41O-01 1 65851450 65851450 A G DNAJC6 Missense_Mutation p.K286E 0.21 deleterious(0.02) possibly_damaging(0.822) TCGA-KQ-A41O-01 1 66458798 66458798 G A PDE4B Intron 0.53 TCGA-KQ-A41O-01 1 67890811 67890811 G C SERBP1 Missense_Mutation p.S187C 0.53 deleterious(0.03) possibly_damaging(0.678) TCGA-KQ-A41O-01 1 8390374 8390374 C A SLC45A1 Missense_Mutation p.A274E 0.33 deleterious(0) possibly_damaging(0.863) TCGA-KQ-A41O-01 20 20071507 20071507 C T C20orf26 Missense_Mutation p.L196F 0.59 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 20 25275582 25275582 G A ABHD12 3'UTR 0.19 TCGA-KQ-A41O-01 20 32379086 32379086 G A ZNF341 Silent p.L769L 0.28 TCGA-KQ-A41O-01 20 37639029 37639029 C G DHX35 Silent p.L443L 0.65 TCGA-KQ-A41O-01 20 44815312 44815312 G A CDH22 Silent p.D526D 0.68 TCGA-KQ-A41O-01 20 49221196 49221196 C A FAM65C Nonsense_Mutation p.E354* 0.53 TCGA-KQ-A41O-01 20 49221298 49221298 C T FAM65C Missense_Mutation p.E320K 0.40 deleterious(0.03) benign(0.419) TCGA-KQ-A41O-01 20 50768852 50768852 C T ZFP64 Missense_Mutation p.E627K 0.52 deleterious(0) probably_damaging(0.98) TCGA-KQ-A41O-01 20 51871351 51871351 G C TSHZ2 Missense_Mutation p.D452H 0.38 tolerated(0.18) possibly_damaging(0.681) TCGA-KQ-A41O-01 20 62191595 62191595 G C HELZ2 Missense_Mutation p.S2529C 0.33 deleterious(0.02) possibly_damaging(0.827) TCGA-KQ-A41O-01 21 11021122 11021122 G A BAGE2 RNA 0.03 TCGA-KQ-A41O-01 22 21336774 21336774 C G LZTR1 Silent p.V38V 0.55 TCGA-KQ-A41O-01 22 26776379 26776379 G C SEZ6L 3'Flank 0.63 TCGA-KQ-A41O-01 22 31032580 31032580 G C SLC35E4 Missense_Mutation p.R48P 0.30 deleterious(0.03) benign(0.397) TCGA-KQ-A41O-01 22 32871244 32871244 G C FBXO7 Intron 0.33 TCGA-KQ-A41O-01 2 10747419 10747419 G A NOL10 Missense_Mutation p.R349W 0.41 deleterious(0) possibly_damaging(0.841) TCGA-KQ-A41O-01 2 111417577 111417577 C G BUB1 Missense_Mutation p.Q418H 0.33 tolerated(0.06) benign(0.024) TCGA-KQ-A41O-01 2 122187649 122187649 G A CLASP1 Nonsense_Mutation p.R673* 0.21 TCGA-KQ-A41O-01 2 135206325 135206325 C T MGAT5 Silent p.F711F 0.63 TCGA-KQ-A41O-01 2 158114490 158114490 C T GALNT5 5'UTR 0.52 TCGA-KQ-A41O-01 2 160663529 160663529 C G LY75-CD302 Missense_Mutation p.E1649Q 0.45 tolerated(0.16) possibly_damaging(0.859) TCGA-KQ-A41O-01 2 179479481 179479481 C A TTN Splice_Site p.X16254_splice 1.00 TCGA-KQ-A41O-01 2 24207568 24207568 G C UBXN2A Missense_Mutation p.A151P 0.35 tolerated(0.08) benign(0.323) TCGA-KQ-A41O-01 2 26724654 26724654 C G OTOF Missense_Mutation p.E245Q 0.37 tolerated(0.29) probably_damaging(0.947) TCGA-KQ-A41O-01 2 27683945 27683945 C G IFT172 Missense_Mutation p.E820Q 0.36 tolerated(0.06) benign(0.111) TCGA-KQ-A41O-01 2 37455163 37455163 C G CEBPZ Silent p.L391L 0.33 TCGA-KQ-A41O-01 2 37455357 37455357 C G CEBPZ Missense_Mutation p.D327H 0.38 deleterious(0.01) probably_damaging(1) TCGA-KQ-A41O-01 2 37586817 37586817 C G QPCT Nonsense_Mutation p.S121* 0.62 TCGA-KQ-A41O-01 2 39494364 39494364 G C MAP4K3 Missense_Mutation p.I666M 0.59 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41O-01 2 54028967 54028967 G A ERLEC1 Silent p.R289R 0.56 TCGA-KQ-A41O-01 2 75116558 75116558 C G HK2 Silent p.L854L 0.67 TCGA-KQ-A41O-01 2 89034111 89034111 C G RPIA Missense_Mutation p.L169V 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-KQ-A41O-01 3 113379945 113379945 G A KIAA2018 Missense_Mutation p.P195L 0.16 probably_damaging(0.999) TCGA-KQ-A41O-01 3 120469615 120469615 C G GTF2E1 Missense_Mutation p.I72M 0.76 deleterious(0) possibly_damaging(0.882) TCGA-KQ-A41O-01 3 122335880 122335880 C G PARP15 Missense_Mutation p.S290C 0.19 deleterious(0) benign(0.063) TCGA-KQ-A41O-01 3 126138565 126138565 G T CCDC37 Nonsense_Mutation p.E273* 0.76 TCGA-KQ-A41O-01 3 141595697 141595697 C G ATP1B3 Silent p.L18L 0.83 TCGA-KQ-A41O-01 3 183963350 183963350 C T ALG3 Missense_Mutation p.R117Q 0.11 tolerated(0.46) benign(0.004) TCGA-KQ-A41O-01 3 189526302 189526302 C T TP63 Missense_Mutation p.S189L 0.68 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41O-01 3 195453055 195453055 G T MUC20 Missense_Mutation p.R527S 0.08 tolerated(0.74) unknown(0) TCGA-KQ-A41O-01 3 195513063 195513063 G A MUC4 Silent p.T1796T 0.27 TCGA-KQ-A41O-01 3 197476899 197476899 G A FYTTD1 Silent p.P19P 0.14 TCGA-KQ-A41O-01 3 21467039 21467039 G A ZNF385D Missense_Mutation p.T266I 0.20 deleterious(0) probably_damaging(0.969) TCGA-KQ-A41O-01 3 28520308 28520308 G A ZCWPW2 Missense_Mutation p.E166K 0.76 tolerated(0.77) benign(0.006) TCGA-KQ-A41O-01 3 37034486 37034486 A G EPM2AIP1 Missense_Mutation p.V28A 0.80 tolerated(0.11) benign(0.183) TCGA-KQ-A41O-01 3 42727379 42727379 A T KLHL40 Missense_Mutation p.Y90F 0.19 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 3 42781263 42781263 C T CCDC13 Missense_Mutation p.E343K 0.17 tolerated(0.07) benign(0.416) TCGA-KQ-A41O-01 3 47031020 47031020 G A NBEAL2 Missense_Mutation p.E165K 0.87 tolerated(0.06) possibly_damaging(0.751) TCGA-KQ-A41O-01 3 47044008 47044008 C T NBEAL2 Nonsense_Mutation p.Q1767* 0.21 TCGA-KQ-A41O-01 3 47459955 47459955 G A SCAP Silent p.L729L 0.80 TCGA-KQ-A41O-01 3 51101936 51101940 CTGCG - DOCK3 Frame_Shift_Del p.L125Kfs*17 0.14 TCGA-KQ-A41O-01 3 51671476 51671476 C G RAD54L2 Missense_Mutation p.R547G 0.12 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 3 58849556 58849556 G T C3orf67 Missense_Mutation p.L316I 0.17 tolerated(0.42) benign(0.042) TCGA-KQ-A41O-01 3 9412960 9412960 C G THUMPD3 Missense_Mutation p.H183D 0.24 tolerated(0.56) benign(0.002) TCGA-KQ-A41O-01 3 9860737 9860737 C T TTLL3 Intron 0.70 TCGA-KQ-A41O-01 3 99567101 99567101 G A FILIP1L Intron 0.16 TCGA-KQ-A41O-01 3 9990803 9990803 C G PRRT3 Missense_Mutation p.D333H 0.72 tolerated_low_confidence(0.08) benign(0.038) TCGA-KQ-A41O-01 4 111542361 111542361 C T PITX2 Missense_Mutation p.E124K 0.28 deleterious(0.01) possibly_damaging(0.886) TCGA-KQ-A41O-01 4 155614 155614 C G ZNF718 RNA 0.54 TCGA-KQ-A41O-01 4 166964423 166964423 C T TLL1 Intron 0.32 TCGA-KQ-A41O-01 4 20512737 20512737 A G SLIT2 Silent p.Q345Q 0.22 TCGA-KQ-A41O-01 4 41015820 41015820 A G APBB2 Silent p.D205D 0.25 TCGA-KQ-A41O-01 4 52779528 52779528 G C DCUN1D4 Missense_Mutation p.D265H 0.25 deleterious(0.03) possibly_damaging(0.873) TCGA-KQ-A41O-01 4 88415228 88415228 C G SPARCL1 Missense_Mutation p.D242H 0.61 deleterious(0) possibly_damaging(0.885) TCGA-KQ-A41O-01 5 1057650 1057650 C G SLC12A7 Missense_Mutation p.A988P 0.10 deleterious(0.03) possibly_damaging(0.47) TCGA-KQ-A41O-01 5 110448795 110448795 G T WDR36 Missense_Mutation p.W636L 0.17 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 5 11346669 11346669 G A CTNND2 Silent p.A481A 0.88 TCGA-KQ-A41O-01 5 1217012 1217012 C T SLC6A19 Silent p.Y375Y 0.08 TCGA-KQ-A41O-01 5 137666877 137666877 G C CDC25C 5'UTR 0.51 TCGA-KQ-A41O-01 5 140559550 140559550 C G PCDHB8 Silent p.V645V 0.45 TCGA-KQ-A41O-01 5 147480072 147480072 G C SPINK5 Missense_Mutation p.R383T 0.46 deleterious(0.05) probably_damaging(1) TCGA-KQ-A41O-01 5 14749321 14749321 A G ANKH Missense_Mutation p.F261S 0.75 tolerated(0.16) probably_damaging(0.939) TCGA-KQ-A41O-01 5 154397065 154397065 C G KIF4B Missense_Mutation p.L1216V 0.40 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-KQ-A41O-01 5 172535678 172535678 C A CREBRF Nonsense_Mutation p.S425* 0.50 TCGA-KQ-A41O-01 5 177171900 177171900 C G FAM153A Missense_Mutation p.E33Q 0.16 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-KQ-A41O-01 5 31317573 31317573 C G CDH6 Nonsense_Mutation p.S535* 0.85 TCGA-KQ-A41O-01 5 50055531 50055531 A T PARP8 Missense_Mutation p.E80V 0.75 deleterious_low_confidence(0) benign(0.386) TCGA-KQ-A41O-01 5 58289271 58289271 C G PDE4D Missense_Mutation p.E315Q 0.29 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-KQ-A41O-01 5 63256392 63256392 G C HTR1A Missense_Mutation p.I385M 0.49 deleterious(0.01) probably_damaging(1) TCGA-KQ-A41O-01 5 70845283 70845283 A G BDP1 Missense_Mutation p.D2282G 0.38 deleterious(0) possibly_damaging(0.864) TCGA-KQ-A41O-01 5 76932913 76932913 C T OTP Silent p.G60G 0.59 TCGA-KQ-A41O-01 5 94114838 94114838 C T MCTP1 Missense_Mutation p.E863K 0.39 deleterious(0.01) possibly_damaging(0.721) TCGA-KQ-A41O-01 6 106967232 106967232 C G AIM1 Missense_Mutation p.L309V 0.29 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41O-01 6 109312023 109312023 C G SESN1 Missense_Mutation p.D417H 0.75 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41O-01 6 129905215 129905215 G C ARHGAP18 Missense_Mutation p.L586V 0.70 tolerated(0.06) benign(0.275) TCGA-KQ-A41O-01 6 131540840 131540840 A T AKAP7 Missense_Mutation p.I248F 0.29 tolerated(0.06) possibly_damaging(0.497) TCGA-KQ-A41O-01 6 132054743 132054743 C G ENPP3 Missense_Mutation p.L657V 0.32 tolerated(0.23) benign(0.344) TCGA-KQ-A41O-01 6 143660939 143660939 G A AIG1 3'UTR 0.37 TCGA-KQ-A41O-01 6 152510474 152510474 G C SYNE1 Silent p.L7738L 0.20 TCGA-KQ-A41O-01 6 152737524 152737524 C T SYNE1 Silent p.Q2016Q 0.55 TCGA-KQ-A41O-01 6 15496889 15496889 G A JARID2 Missense_Mutation p.R478K 0.56 tolerated_low_confidence(1) benign(0) TCGA-KQ-A41O-01 6 160671698 160671698 G C SLC22A2 Silent p.L185L 0.33 TCGA-KQ-A41O-01 6 161512447 161512447 G T MAP3K4 Missense_Mutation p.A1004S 0.25 tolerated(0.14) benign(0.069) TCGA-KQ-A41O-01 6 17777570 17777570 C G KIF13A Missense_Mutation p.E1370Q 0.40 deleterious(0.02) probably_damaging(0.965) TCGA-KQ-A41O-01 6 1960113 1960113 T A GMDS Missense_Mutation p.S211C 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KQ-A41O-01 6 20126743 20126769 CTTACTGTGGGAGAAGGTTCTGGCAAG - MBOAT1 Splice_Site p.X231_splice 0.16 TCGA-KQ-A41O-01 6 26045858 26045858 G C HIST1H3C Missense_Mutation p.E74Q 0.58 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-KQ-A41O-01 6 27834656 27834657 CC A HIST1H1B Frame_Shift_Del p.K217Nfs*? 0.19 TCGA-KQ-A41O-01 6 29572739 29572739 G T GABBR1 Silent p.V822V 0.41 TCGA-KQ-A41O-01 6 30595007 30595007 C T ATAT1 Silent p.F9F 0.55 TCGA-KQ-A41O-01 6 30595904 30595904 C G ATAT1 Silent p.L127L 0.47 TCGA-KQ-A41O-01 6 32015752 32015752 C G TNXB 5'Flank 0.50 TCGA-KQ-A41O-01 6 43593257 43593257 G C GTPBP2 Missense_Mutation p.S183C 0.56 deleterious(0) probably_damaging(0.935) TCGA-KQ-A41O-01 6 49936459 49936459 G A DEFB113 Silent p.P60P 0.23 TCGA-KQ-A41O-01 6 56484247 56484247 G A DST Intron 0.46 TCGA-KQ-A41O-01 6 64394770 64394770 A T PHF3 Missense_Mutation p.I383F 0.48 deleterious_low_confidence(0.04) benign(0.001) TCGA-KQ-A41O-01 7 107399351 107399351 C A CBLL1 Missense_Mutation p.P402T 0.45 tolerated(0.13) probably_damaging(0.998) TCGA-KQ-A41O-01 7 107399366 107399366 C A CBLL1 Missense_Mutation p.P407T 0.45 tolerated(0.07) probably_damaging(0.998) TCGA-KQ-A41O-01 7 150936725 150936725 C T SMARCD3 Silent p.Q427Q 0.50 TCGA-KQ-A41O-01 7 24789223 24789223 G A DFNA5 Silent p.T57T 0.23 TCGA-KQ-A41O-01 7 24905009 24905009 C A OSBPL3 Missense_Mutation p.V209F 0.27 deleterious(0) benign(0.005) TCGA-KQ-A41O-01 7 44187355 44187355 C T GCK Missense_Mutation p.V254I 0.23 tolerated(1) benign(0.03) TCGA-KQ-A41O-01 7 4901257 4901257 C A PAPOLB Missense_Mutation p.R61M 0.47 deleterious(0) probably_damaging(1) TCGA-KQ-A41O-01 7 77797326 77797326 C T MAGI2 Missense_Mutation p.G835S 0.49 deleterious(0) possibly_damaging(0.52) TCGA-KQ-A41O-01 7 82581329 82581329 C T PCLO Silent p.G2980G 0.24 TCGA-KQ-A41O-01 7 90585039 90585039 G C CDK14 Missense_Mutation p.S267T 0.21 tolerated(0.66) benign(0.021) TCGA-KQ-A41O-01 7 91852289 91852289 C T KRIT1 Missense_Mutation p.E420K 0.46 tolerated(0.52) possibly_damaging(0.804) TCGA-KQ-A41O-01 8 100887665 100887665 G C VPS13B Missense_Mutation p.R3947T 0.46 deleterious(0) benign(0.227) TCGA-KQ-A41O-01 8 108348433 108348433 C T ANGPT1 Missense_Mutation p.E174K 0.39 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41O-01 8 113364671 113364671 G A CSMD3 Nonsense_Mutation p.Q2077* 0.44 TCGA-KQ-A41O-01 8 121220554 121220554 C A COL14A1 Silent p.I425I 0.40 TCGA-KQ-A41O-01 8 133146599 133146599 C T KCNQ3 Silent p.T579T 0.05 TCGA-KQ-A41O-01 8 139620211 139620211 A T COL22A1 Missense_Mutation p.S1334T 0.26 unknown(0) TCGA-KQ-A41O-01 8 22168683 22168683 A T PIWIL2 Missense_Mutation p.E620V 0.50 deleterious(0) benign(0.358) TCGA-KQ-A41O-01 8 22548292 22548292 G C EGR3 Missense_Mutation p.F286L 0.44 deleterious(0) possibly_damaging(0.696) TCGA-KQ-A41O-01 8 23708867 23708867 C A STC1 Nonsense_Mutation p.E147* 0.41 TCGA-KQ-A41O-01 8 25325802 25325802 G A CDCA2 Missense_Mutation p.R203K 0.48 tolerated(0.25) benign(0.02) TCGA-KQ-A41O-01 8 2944805 2944805 G T CSMD1 Missense_Mutation p.P2430T 0.16 possibly_damaging(0.557) TCGA-KQ-A41O-01 8 39872887 39872887 G C IDO2 Silent p.L343L 0.52 TCGA-KQ-A41O-01 8 42587675 42587675 G C CHRNB3 Missense_Mutation p.E409Q 0.35 tolerated(0.35) benign(0.103) TCGA-KQ-A41O-01 8 87558870 87558870 C G CPNE3 Missense_Mutation p.S260R 0.18 tolerated(0.08) benign(0.128) TCGA-KQ-A41O-01 9 1056848 1056848 C T DMRT2 Nonsense_Mutation p.Q421* 0.94 TCGA-KQ-A41O-01 9 123939552 123939552 A G CNTRL 3'UTR 0.96 TCGA-KQ-A41O-01 9 140705990 140705990 C T EHMT1 Silent p.C930C 0.09 TCGA-KQ-A41O-01 X 106070524 106070524 G C TBC1D8B Missense_Mutation p.R387T 0.97 tolerated(0.2) benign(0.032) TCGA-KQ-A41O-01 X 123220428 123220428 C T STAG2 Nonsense_Mutation p.Q1029* 0.96 TCGA-KQ-A41O-01 X 123220520 123220520 C A STAG2 Silent p.V1059V 1.00 TCGA-KQ-A41O-01 X 128975966 128975966 G C ZDHHC9 5'UTR 0.95 TCGA-KQ-A41O-01 X 129148372 129148372 G A BCORL1 Missense_Mutation p.D542N 0.97 possibly_damaging(0.544) TCGA-KQ-A41O-01 X 151821357 151821357 G C GABRQ Missense_Mutation p.L504F 0.89 tolerated(0.7) benign(0.027) TCGA-KQ-A41O-01 X 32360261 32360261 C G DMD Missense_Mutation p.E1960Q 0.98 possibly_damaging(0.607) TCGA-KQ-A41O-01 X 44091782 44091782 C T EFHC2 Missense_Mutation p.R522H 0.38 tolerated(0.52) benign(0) TCGA-KQ-A41O-01 X 44938447 44938447 G T KDM6A Nonsense_Mutation p.E999* 0.95 TCGA-KQ-A41O-01 X 48831591 48831591 G T GRIPAP1 Silent p.L803L 0.95 TCGA-KQ-A41O-01 X 70346944 70346944 C T MED12 Silent p.L937L 0.93 TCGA-KQ-A41P-01 10 101949209 101949209 C G CHUK 3'UTR 0.50 TCGA-KQ-A41P-01 10 105642353 105642353 G C OBFC1 3'UTR 0.19 TCGA-KQ-A41P-01 10 105798197 105798197 C G COL17A1 Missense_Mutation p.E1013Q 0.64 probably_damaging(0.989) TCGA-KQ-A41P-01 10 106865234 106865234 C T SORCS3 Silent p.I391I 0.60 TCGA-KQ-A41P-01 10 120095811 120095811 C T FAM204A Silent p.E39E 0.10 TCGA-KQ-A41P-01 10 129904707 129904707 C T MKI67 Silent p.L1799L 0.33 TCGA-KQ-A41P-01 10 135352447 135352447 C G CYP2E1 Silent p.L487L 0.12 TCGA-KQ-A41P-01 10 17277378 17277378 G A VIM Missense_Mutation p.E407K 0.22 deleterious(0) possibly_damaging(0.752) TCGA-KQ-A41P-01 10 18439885 18439885 C T CACNB2 Missense_Mutation p.S65L 0.10 deleterious(0) benign(0.354) TCGA-KQ-A41P-01 10 20453396 20453396 G C PLXDC2 Splice_Site p.X262_splice 0.25 TCGA-KQ-A41P-01 10 22839648 22839648 C A PIP4K2A Missense_Mutation p.K244N 0.16 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41P-01 10 22839695 22839695 C G PIP4K2A Missense_Mutation p.E229Q 0.20 deleterious(0.02) probably_damaging(0.936) TCGA-KQ-A41P-01 10 30638054 30638054 C A MTPAP Nonsense_Mutation p.E51* 0.47 TCGA-KQ-A41P-01 10 30740671 30740671 G C MAP3K8 Missense_Mutation p.E291Q 0.13 tolerated(0.17) benign(0.203) TCGA-KQ-A41P-01 10 3824407 3824407 C G KLF6 Splice_Site p.X35_splice 0.61 TCGA-KQ-A41P-01 10 38344084 38344084 C T ZNF33A Silent p.L344L 0.58 TCGA-KQ-A41P-01 10 44052570 44052570 C G ZNF239 Missense_Mutation p.E320Q 0.08 deleterious(0.03) possibly_damaging(0.88) TCGA-KQ-A41P-01 10 68040323 68040323 A T CTNNA3 Missense_Mutation p.S597T 0.36 tolerated(0.39) unknown(0) TCGA-KQ-A41P-01 10 70333915 70333915 C G TET1 Missense_Mutation p.T607S 0.63 tolerated(0.42) possibly_damaging(0.883) TCGA-KQ-A41P-01 10 71677051 71677051 C T COL13A1 Missense_Mutation p.R320W 0.21 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41P-01 10 75407057 75407057 G A SYNPO2L Missense_Mutation p.R785W 0.63 deleterious(0) possibly_damaging(0.708) TCGA-KQ-A41P-01 10 79785921 79785921 C T POLR3A Silent p.V37V 0.56 TCGA-KQ-A41P-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.69 TCGA-KQ-A41P-01 11 105929758 105929758 C G KBTBD3 Missense_Mutation p.E23Q 0.47 deleterious_low_confidence(0.04) benign(0.134) TCGA-KQ-A41P-01 11 113934100 113934100 G C ZBTB16 Missense_Mutation p.Q26H 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-KQ-A41P-01 11 118764412 118764412 C T CXCR5 Silent p.F53F 0.32 TCGA-KQ-A41P-01 11 18291282 18291282 C G SAA1 Missense_Mutation p.I83M 0.29 tolerated(0.08) benign(0.039) TCGA-KQ-A41P-01 11 2187766 2187766 C G TH Missense_Mutation p.E362Q 0.69 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41P-01 11 2608853 2608853 C A KCNQ1 Silent p.I394I 0.60 TCGA-KQ-A41P-01 11 5344899 5344899 A G OR51B2 Missense_Mutation p.L210P 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-KQ-A41P-01 11 5537402 5537402 G A UBQLNL Silent p.I90I 0.48 TCGA-KQ-A41P-01 11 58391533 58391533 C T CNTF Silent p.N47N 0.53 TCGA-KQ-A41P-01 11 64005008 64005008 C G VEGFB Missense_Mutation p.A176G 0.31 deleterious(0.02) unknown(0) TCGA-KQ-A41P-01 11 6520029 6520029 G A DNHD1 Missense_Mutation p.R195H 0.55 benign(0) TCGA-KQ-A41P-01 11 68458508 68458508 G A GAL 3'UTR 0.17 TCGA-KQ-A41P-01 11 70220986 70220986 C T PPFIA1 Intron 0.77 TCGA-KQ-A41P-01 11 75146522 75146522 C T GDPD5 3'UTR 0.27 TCGA-KQ-A41P-01 11 9167252 9167252 G A DENND5A Nonsense_Mutation p.Q990* 0.36 TCGA-KQ-A41P-01 11 93796790 93796790 G A HEPHL1 Missense_Mutation p.D178N 0.23 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 12 100551835 100551835 C T AC010203.1 5'Flank 0.24 TCGA-KQ-A41P-01 12 112481464 112481494 CCAGGGTTGCCTCCAGCTGTTGAAGGAGCAA - NAA25 Frame_Shift_Del p.L729Rfs*36 0.40 TCGA-KQ-A41P-01 12 113385859 113385859 C T OAS3 Silent p.C328C 0.23 TCGA-KQ-A41P-01 12 113405326 113405326 A G OAS3 Silent p.Q931Q 0.22 TCGA-KQ-A41P-01 12 117962701 117962701 G A KSR2 Silent p.F725F 0.32 TCGA-KQ-A41P-01 12 123649942 123649942 C G MPHOSPH9 Missense_Mutation p.D740H 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-KQ-A41P-01 12 124094537 124094537 C T DDX55 Silent p.F201F 0.67 TCGA-KQ-A41P-01 12 129563091 129563091 C G TMEM132D Missense_Mutation p.Q701H 0.21 tolerated(0.59) benign(0.012) TCGA-KQ-A41P-01 12 133210782 133210782 C G POLE Missense_Mutation p.M1998I 0.26 tolerated(0.26) benign(0.005) TCGA-KQ-A41P-01 12 133389926 133389926 G C GOLGA3 Silent p.L162L 0.12 TCGA-KQ-A41P-01 12 15794712 15794712 C G EPS8 Missense_Mutation p.D541H 0.39 deleterious(0.03) probably_damaging(0.952) TCGA-KQ-A41P-01 12 402040 402040 C T KDM5A Missense_Mutation p.R1584K 0.05 tolerated(0.46) benign(0.199) TCGA-KQ-A41P-01 12 44142294 44142294 G A PUS7L Silent p.I343I 0.39 TCGA-KQ-A41P-01 12 46205217 46205217 G A ARID2 Missense_Mutation p.E101K 0.37 deleterious(0) probably_damaging(0.995) TCGA-KQ-A41P-01 12 48543479 48543479 G A ASB8 Silent p.V179V 0.53 TCGA-KQ-A41P-01 12 49312217 49312217 G C CCDC65 Missense_Mutation p.E257Q 0.32 tolerated(0.05) possibly_damaging(0.615) TCGA-KQ-A41P-01 12 50384502 50384502 C T RACGAP1 Silent p.Q596Q 0.51 TCGA-KQ-A41P-01 12 51488878 51488878 C A TFCP2 3'UTR 0.24 TCGA-KQ-A41P-01 12 5154364 5154364 G A KCNA5 Missense_Mutation p.G351R 0.10 tolerated(0.32) benign(0.057) TCGA-KQ-A41P-01 12 52648071 52648071 C G KRT121P RNA 0.06 TCGA-KQ-A41P-01 12 54379040 54379040 G A HOXC10 5'UTR 0.53 TCGA-KQ-A41P-01 12 57922070 57922070 C G MBD6 Silent p.L849L 0.31 TCGA-KQ-A41P-01 12 65462577 65462577 G C WIF1 Missense_Mutation p.Q169E 0.46 deleterious(0.02) benign(0.124) TCGA-KQ-A41P-01 12 66638281 66638281 G A IRAK3 Silent p.L301L 0.59 TCGA-KQ-A41P-01 12 68688958 68688958 C G MDM1 3'UTR 0.31 TCGA-KQ-A41P-01 12 71029718 71029718 G C PTPRB Missense_Mutation p.H62D 0.27 deleterious_low_confidence(0.02) benign(0.22) TCGA-KQ-A41P-01 12 72667327 72667327 G A TRHDE Missense_Mutation p.G257R 0.26 tolerated(0.17) benign(0.307) TCGA-KQ-A41P-01 12 7869603 7869603 T A DPPA3 Missense_Mutation p.V137E 0.24 deleterious(0.02) benign(0.001) TCGA-KQ-A41P-01 12 81242056 81242056 C T LIN7A Missense_Mutation p.E83K 0.62 deleterious(0) possibly_damaging(0.881) TCGA-KQ-A41P-01 12 83250798 83250798 C G TMTC2 Missense_Mutation p.I31M 0.48 deleterious(0) probably_damaging(0.98) TCGA-KQ-A41P-01 13 111973253 111973253 G A TEX29 Missense_Mutation p.E6K 0.42 deleterious(0) possibly_damaging(0.486) TCGA-KQ-A41P-01 13 26788723 26788723 G A RNF6 Silent p.V432V 0.07 TCGA-KQ-A41P-01 13 39265136 39265136 G T FREM2 Missense_Mutation p.D1219Y 0.27 deleterious(0) possibly_damaging(0.898) TCGA-KQ-A41P-01 13 43462565 43462565 G C EPSTI1 Missense_Mutation p.L352V 0.47 deleterious_low_confidence(0.02) benign(0.196) TCGA-KQ-A41P-01 13 46549917 46549917 C T ZC3H13 Missense_Mutation p.D657N 0.13 unknown(0) TCGA-KQ-A41P-01 14 21838056 21838056 C G SUPT16H Splice_Site p.X162_splice 0.22 TCGA-KQ-A41P-01 14 23315081 23315081 G A MMP14 Missense_Mutation p.E528K 0.47 tolerated(0.61) possibly_damaging(0.887) TCGA-KQ-A41P-01 14 24601589 24601589 G A FITM1 Missense_Mutation p.E146K 0.53 deleterious(0.01) possibly_damaging(0.884) TCGA-KQ-A41P-01 14 24806528 24806528 C T RIPK3 Missense_Mutation p.E347K 0.11 tolerated(0.08) benign(0.069) TCGA-KQ-A41P-01 14 24806898 24806898 C T RIPK3 Intron 0.15 TCGA-KQ-A41P-01 14 62204942 62204942 C T HIF1A Nonsense_Mutation p.R487* 0.11 TCGA-KQ-A41P-01 14 64457780 64457780 C T SYNE2 Nonsense_Mutation p.Q865* 0.38 TCGA-KQ-A41P-01 14 69256682 69256683 - C ZFP36L1 Frame_Shift_Ins p.P196Sfs*6 0.43 TCGA-KQ-A41P-01 15 32935874 32935874 C T SCG5 Silent p.Y27Y 0.30 TCGA-KQ-A41P-01 15 41279334 41279334 C T INO80 Missense_Mutation p.E1263K 0.40 deleterious(0) probably_damaging(0.98) TCGA-KQ-A41P-01 15 43533067 43533067 C A TGM5 Missense_Mutation p.K328N 0.40 tolerated(0.29) possibly_damaging(0.896) TCGA-KQ-A41P-01 15 44943789 44943789 G C SPG11 Silent p.L452L 0.43 TCGA-KQ-A41P-01 15 52531977 52531977 G A MYO5C Nonsense_Mutation p.Q886* 0.38 TCGA-KQ-A41P-01 15 63125546 63125546 C G TLN2 Intron 0.41 TCGA-KQ-A41P-01 15 72431943 72431943 G A SENP8 5'UTR 0.36 TCGA-KQ-A41P-01 15 93524072 93524072 G A CHD2 Silent p.L968L 0.11 TCGA-KQ-A41P-01 15 94945136 94945136 C G MCTP2 Nonsense_Mutation p.S658* 0.28 TCGA-KQ-A41P-01 16 1470141 1470141 C T C16orf91 Missense_Mutation p.E292K 0.54 deleterious_low_confidence(0) benign(0.001) TCGA-KQ-A41P-01 16 30133279 30133279 G C MAPK3 Missense_Mutation p.I73M 0.34 deleterious(0.01) probably_damaging(0.949) TCGA-KQ-A41P-01 16 30133373 30133373 G A MAPK3 Intron 0.54 TCGA-KQ-A41P-01 16 30515570 30515570 G A ITGAL Silent p.P740P 0.17 TCGA-KQ-A41P-01 16 30995043 30995043 G A SETD1A Missense_Mutation p.D1634N 0.21 unknown(0) TCGA-KQ-A41P-01 16 66432434 66432434 G A CDH5 Missense_Mutation p.E521K 0.30 deleterious(0.01) benign(0.395) TCGA-KQ-A41P-01 16 67580076 67580076 C G FAM65A Silent p.L1188L 0.18 TCGA-KQ-A41P-01 16 67899100 67899100 G C NUTF2 Missense_Mutation p.D23H 0.40 deleterious(0) benign(0.258) TCGA-KQ-A41P-01 16 68349885 68349885 G A PRMT7 Translation_Start_Site p.M1? 0.40 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41P-01 16 70358513 70358513 C T DDX19B Nonsense_Mutation p.Q139* 0.28 TCGA-KQ-A41P-01 16 822904 822904 C G MSLNL Missense_Mutation p.E761Q 0.38 possibly_damaging(0.5) TCGA-KQ-A41P-01 16 84442088 84442088 C T ATP2C2 Silent p.V135V 0.37 TCGA-KQ-A41P-01 16 84488447 84488447 C T ATP2C2 Silent p.I668I 0.29 TCGA-KQ-A41P-01 17 10358115 10358115 G A MYH4 Silent p.F816F 0.21 TCGA-KQ-A41P-01 17 10553715 10553715 C T MYH3 Missense_Mutation p.R170H 0.49 deleterious(0.02) possibly_damaging(0.64) TCGA-KQ-A41P-01 17 11713684 11713684 C T DNAH9 Missense_Mutation p.S2902F 0.13 probably_damaging(0.988) TCGA-KQ-A41P-01 17 17696462 17696462 C G RAI1 Missense_Mutation p.S67C 0.32 deleterious_low_confidence(0.01) benign(0.332) TCGA-KQ-A41P-01 17 17700331 17700331 C G RAI1 Missense_Mutation p.L1357V 0.24 tolerated(0.19) benign(0.008) TCGA-KQ-A41P-01 17 18967273 18967273 G A SNORD3B-2 RNA 0.19 TCGA-KQ-A41P-01 17 27251308 27251308 T C PHF12 Missense_Mutation p.K112E 0.11 tolerated(0.06) possibly_damaging(0.719) TCGA-KQ-A41P-01 17 33430553 33430553 G A RAD51L3-RFFL Missense_Mutation p.S37F 0.62 deleterious_low_confidence(0.01) benign(0.06) TCGA-KQ-A41P-01 17 37188315 37188315 C T CTD-2206N4.2 5'Flank 0.18 TCGA-KQ-A41P-01 17 38179390 38179390 C G MED24 Silent p.L748L 0.26 TCGA-KQ-A41P-01 17 40647151 40647151 C T ATP6V0A1 Missense_Mutation p.L479F 0.58 tolerated(0.48) probably_damaging(0.918) TCGA-KQ-A41P-01 17 46691983 46691983 G A HOXB8 Silent p.F28F 0.20 TCGA-KQ-A41P-01 17 4692582 4692582 C A GLTPD2 Missense_Mutation p.F56L 0.84 tolerated_low_confidence(0.6) benign(0.001) TCGA-KQ-A41P-01 17 53016305 53016305 G C TOM1L1 Missense_Mutation p.D352H 0.63 tolerated(0.12) benign(0.004) TCGA-KQ-A41P-01 17 617916 617916 C A VPS53 Nonsense_Mutation p.E12* 0.18 TCGA-KQ-A41P-01 17 61841547 61841547 G C CCDC47 Missense_Mutation p.P126A 0.20 deleterious(0) possibly_damaging(0.905) TCGA-KQ-A41P-01 17 62265632 62265632 G A TEX2 Missense_Mutation p.L781F 0.13 deleterious(0.02) possibly_damaging(0.477) TCGA-KQ-A41P-01 17 65905851 65905851 C T BPTF Missense_Mutation p.S989L 0.22 benign(0.039) TCGA-KQ-A41P-01 17 7193782 7193782 G A YBX2 Missense_Mutation p.R178C 0.16 deleterious(0.01) possibly_damaging(0.689) TCGA-KQ-A41P-01 17 72608872 72608872 G C CD300E Missense_Mutation p.L180V 0.14 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41P-01 17 72926613 72926613 C T OTOP2 Silent p.L295L 0.08 TCGA-KQ-A41P-01 17 73487838 73487838 G C KIAA0195 Missense_Mutation p.E485Q 0.19 tolerated(0.16) benign(0.375) TCGA-KQ-A41P-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.85 deleterious(0) probably_damaging(0.947) TCGA-KQ-A41P-01 17 78343595 78343595 C T RNF213 Missense_Mutation p.S4118F 0.18 probably_damaging(0.919) TCGA-KQ-A41P-01 17 80674690 80674690 C T FN3KRP Missense_Mutation p.S20L 0.29 tolerated(0.44) benign(0.025) TCGA-KQ-A41P-01 18 32400851 32400851 G A DTNA Missense_Mutation p.E325K 0.24 tolerated(0.05) possibly_damaging(0.596) TCGA-KQ-A41P-01 18 34174752 34174752 C T FHOD3 Silent p.F203F 0.25 TCGA-KQ-A41P-01 18 619337 619337 G C CLUL1 Silent p.L77L 0.19 TCGA-KQ-A41P-01 19 10461511 10461511 C T TYK2 Silent p.%3D 0.34 TCGA-KQ-A41P-01 19 10794608 10794608 G A ILF3 Missense_Mutation p.S678N 0.24 tolerated(0.69) unknown(0) TCGA-KQ-A41P-01 19 11031748 11031748 G C CARM1 Missense_Mutation p.L520F 0.43 deleterious_low_confidence(0.05) benign(0.208) TCGA-KQ-A41P-01 19 11032085 11032085 G A CARM1 Silent p.R550R 0.51 TCGA-KQ-A41P-01 19 11032583 11032583 G A CARM1 3'UTR 0.50 TCGA-KQ-A41P-01 19 11510901 11510901 G A RGL3 Silent p.I519I 0.26 TCGA-KQ-A41P-01 19 12187239 12187239 T G ZNF844 Missense_Mutation p.F435C 0.22 deleterious(0) possibly_damaging(0.612) TCGA-KQ-A41P-01 19 14204499 14204499 C G PRKACA Missense_Mutation p.D291H 0.24 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41P-01 19 15917897 15917897 C T OR10H1 Missense_Mutation p.M317I 0.35 tolerated_low_confidence(0.44) benign(0) TCGA-KQ-A41P-01 19 17671217 17671217 G C COLGALT1 Missense_Mutation p.M144I 0.58 tolerated(0.2) benign(0.065) TCGA-KQ-A41P-01 19 18685771 18685771 G A UBA52 Missense_Mutation p.M94I 0.29 deleterious(0.01) benign(0.05) TCGA-KQ-A41P-01 19 22271842 22271842 C G ZNF257 Silent p.P430P 0.26 TCGA-KQ-A41P-01 19 32843954 32843954 C G ZNF507 Nonsense_Mutation p.S73* 0.26 TCGA-KQ-A41P-01 19 33076921 33076921 C T PDCD5 Intron 0.73 TCGA-KQ-A41P-01 19 36049897 36049897 G A ATP4A Missense_Mutation p.S418L 0.27 tolerated(0.06) possibly_damaging(0.685) TCGA-KQ-A41P-01 19 37117584 37117584 T G ZNF382 Missense_Mutation p.L262R 0.11 tolerated(0.26) possibly_damaging(0.748) TCGA-KQ-A41P-01 19 37309748 37309748 G A ZNF790 Missense_Mutation p.H500Y 0.58 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41P-01 19 37369090 37369090 T G ZNF345 Missense_Mutation p.L453R 0.35 deleterious(0.02) possibly_damaging(0.555) TCGA-KQ-A41P-01 19 38849178 38849178 C G CATSPERG Missense_Mutation p.I491M 0.29 deleterious(0) possibly_damaging(0.506) TCGA-KQ-A41P-01 19 42406712 42406712 G A ARHGEF1 Silent p.Q524Q 0.08 TCGA-KQ-A41P-01 19 42797830 42797830 C G CIC Missense_Mutation p.S1294R 0.13 probably_damaging(0.944) TCGA-KQ-A41P-01 19 44611091 44611091 T A ZNF224 Missense_Mutation p.Y260N 0.32 deleterious(0.02) probably_damaging(0.983) TCGA-KQ-A41P-01 19 4529859 4529859 G A PLIN5 Silent p.L92L 0.35 TCGA-KQ-A41P-01 19 46206245 46206245 C A QPCTL Missense_Mutation p.P363T 0.17 tolerated(0.15) probably_damaging(0.998) TCGA-KQ-A41P-01 19 48551620 48551620 G A PLA2G4C Nonsense_Mutation p.R546* 0.56 TCGA-KQ-A41P-01 19 49131577 49131577 G C SPHK2 Intron 0.06 TCGA-KQ-A41P-01 19 49468776 49468776 G T FTL Missense_Mutation p.Q4H 0.39 deleterious(0.02) benign(0.021) TCGA-KQ-A41P-01 19 49655634 49655634 C T HRC Missense_Mutation p.R635Q 0.25 deleterious(0) probably_damaging(0.982) TCGA-KQ-A41P-01 19 49993250 49993250 C T RPL13A Intron 0.40 TCGA-KQ-A41P-01 19 49993265 49993265 C A RPL13A Intron 0.35 TCGA-KQ-A41P-01 19 50183843 50183843 G A PRMT1 Missense_Mutation p.E64K 0.08 deleterious(0) benign(0.147) TCGA-KQ-A41P-01 19 50795577 50795577 C G MYH14 Missense_Mutation p.I1729M 0.44 tolerated(0.1) benign(0.055) TCGA-KQ-A41P-01 19 51205763 51205763 C T SHANK1 Missense_Mutation p.E570K 0.32 possibly_damaging(0.881) TCGA-KQ-A41P-01 19 52001429 52001429 C T SIGLEC12 Silent p.G416G 0.11 TCGA-KQ-A41P-01 19 52220373 52220373 C T HAS1 Missense_Mutation p.R259Q 0.19 tolerated(0.3) benign(0.009) TCGA-KQ-A41P-01 19 54140101 54140101 T A DPRX Silent p.I145I 0.08 TCGA-KQ-A41P-01 19 55143939 55143939 C G LILRB1 Nonsense_Mutation p.S229* 0.50 TCGA-KQ-A41P-01 19 57085814 57085814 G A ZNF470 Missense_Mutation p.E38K 0.71 tolerated(0.24) benign(0.109) TCGA-KQ-A41P-01 19 57085822 57085822 G A ZNF470 Silent p.L40L 0.73 TCGA-KQ-A41P-01 19 58101646 58101646 A C ZIK1 Missense_Mutation p.K156T 0.43 tolerated(0.26) benign(0.003) TCGA-KQ-A41P-01 19 7993025 7993025 G C TIMM44 Missense_Mutation p.I355M 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-KQ-A41P-01 19 9002511 9002511 G C MUC16 Silent p.L13435L 0.12 TCGA-KQ-A41P-01 19 9019599 9019599 C T MUC16 Splice_Site p.X12516_splice 0.24 TCGA-KQ-A41P-01 19 9066445 9066445 G A MUC16 Nonsense_Mutation p.Q7001* 0.54 TCGA-KQ-A41P-01 1 101456177 101456177 C T DPH5 Silent p.E215E 0.49 TCGA-KQ-A41P-01 1 117617552 117617552 C T TTF2 Missense_Mutation p.H116Y 0.25 tolerated(1) benign(0.002) TCGA-KQ-A41P-01 1 154931607 154931607 C A PYGO2 Missense_Mutation p.S290I 0.76 tolerated(0.1) benign(0.068) TCGA-KQ-A41P-01 1 154966176 154966176 G C LENEP Missense_Mutation p.K31N 0.16 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-KQ-A41P-01 1 156670374 156670374 G C CRABP2 Missense_Mutation p.S109W 0.10 tolerated(0.14) probably_damaging(0.921) TCGA-KQ-A41P-01 1 157765841 157765841 A C FCRL1 3'UTR 0.10 TCGA-KQ-A41P-01 1 160267169 160267169 A G COPA Missense_Mutation p.S752P 0.09 tolerated(0.16) benign(0.003) TCGA-KQ-A41P-01 1 161167830 161167830 G A ADAMTS4 Silent p.V196V 0.10 TCGA-KQ-A41P-01 1 162551235 162551235 G C UAP1 Missense_Mutation p.D274H 0.26 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41P-01 1 1635498 1635498 C G CDK11A Missense_Mutation p.E592Q 0.23 deleterious(0) unknown(0) TCGA-KQ-A41P-01 1 170004656 170004656 C G KIFAP3 Missense_Mutation p.D186H 0.67 deleterious(0) probably_damaging(0.993) TCGA-KQ-A41P-01 1 170004663 170004663 C G KIFAP3 Silent p.L183L 0.68 TCGA-KQ-A41P-01 1 17634799 17634799 G C PADI4 Missense_Mutation p.D28H 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-KQ-A41P-01 1 183197603 183197603 C A LAMC2 Missense_Mutation p.N521K 0.48 tolerated(0.12) possibly_damaging(0.809) TCGA-KQ-A41P-01 1 184868434 184868434 C G FAM129A Missense_Mutation p.E22Q 0.82 tolerated(0.13) possibly_damaging(0.828) TCGA-KQ-A41P-01 1 186645143 186645143 G C PTGS2 Missense_Mutation p.Q382E 0.24 tolerated(0.6) benign(0.004) TCGA-KQ-A41P-01 1 18808281 18808281 G A KLHDC7A Missense_Mutation p.R269Q 0.37 tolerated(0.95) benign(0.049) TCGA-KQ-A41P-01 1 204109193 204109193 C T ETNK2 Missense_Mutation p.D280N 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-KQ-A41P-01 1 216011376 216011376 G A USH2A Missense_Mutation p.P3110S 0.06 probably_damaging(0.998) TCGA-KQ-A41P-01 1 220325067 220325067 G A RAB3GAP2 Nonsense_Mutation p.Q1303* 0.21 TCGA-KQ-A41P-01 1 222801319 222801319 C T MIA3 Nonsense_Mutation p.Q253* 0.79 TCGA-KQ-A41P-01 1 228494155 228494155 T A OBSCN Silent p.S4871S 0.48 TCGA-KQ-A41P-01 1 228547813 228547813 G T OBSCN Intron 0.90 TCGA-KQ-A41P-01 1 236180536 236180536 C T NID1 Silent p.G722G 0.84 TCGA-KQ-A41P-01 1 236912460 236912460 C T ACTN2 Missense_Mutation p.H518Y 0.87 tolerated(0.73) benign(0.012) TCGA-KQ-A41P-01 1 236976103 236976103 A G MTR Missense_Mutation p.I190V 0.36 tolerated(0.48) benign(0.014) TCGA-KQ-A41P-01 1 24020391 24020391 G A RPL11 Silent p.E84E 0.24 TCGA-KQ-A41P-01 1 241761105 241761105 G C OPN3 Silent p.L296L 0.88 TCGA-KQ-A41P-01 1 245862267 245862267 G A KIF26B Missense_Mutation p.E2036K 0.78 tolerated(0.05) unknown(0) TCGA-KQ-A41P-01 1 248262671 248262671 A C OR2L13 5'UTR 0.08 TCGA-KQ-A41P-01 1 248436541 248436541 G A OR2T33 Silent p.V192V 0.19 TCGA-KQ-A41P-01 1 29189718 29189718 G A OPRD1 Missense_Mutation p.A348T 0.33 tolerated(0.27) benign(0.023) TCGA-KQ-A41P-01 1 32089201 32089201 G A HCRTR1 Silent p.L272L 0.21 TCGA-KQ-A41P-01 1 34191065 34191065 C T CSMD2 Silent p.G820G 0.33 TCGA-KQ-A41P-01 1 35862210 35862210 T G ZMYM4 Missense_Mutation p.V990G 0.39 deleterious(0) probably_damaging(0.957) TCGA-KQ-A41P-01 1 3756300 3756300 C G CEP104 Missense_Mutation p.D203H 0.46 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41P-01 1 40209570 40209570 G C PPIE Missense_Mutation p.E120Q 0.32 tolerated(0.2) benign(0.005) TCGA-KQ-A41P-01 1 43804268 43804268 C T MPL Nonsense_Mutation p.R90* 0.31 TCGA-KQ-A41P-01 1 44877950 44877950 C A RNF220 Missense_Mutation p.P61T 0.26 deleterious(0) benign(0.388) TCGA-KQ-A41P-01 1 47515769 47515769 C G CYP4X1 Missense_Mutation p.L485V 0.29 tolerated(0.26) benign(0.003) TCGA-KQ-A41P-01 1 87379860 87379860 C G SEP15 5'UTR 0.40 TCGA-KQ-A41P-01 1 89735097 89735097 G A GBP5 Missense_Mutation p.R48C 0.32 deleterious(0.01) possibly_damaging(0.778) TCGA-KQ-A41P-01 1 89846074 89846074 T C GBP6 Missense_Mutation p.V252A 0.49 tolerated(0.07) benign(0.072) TCGA-KQ-A41P-01 1 91859768 91859768 G C HFM1 Missense_Mutation p.Q126E 0.47 tolerated_low_confidence(0.31) benign(0.184) TCGA-KQ-A41P-01 1 92446491 92446491 A T BRDT Missense_Mutation p.E502D 0.13 tolerated(0.07) benign(0.006) TCGA-KQ-A41P-01 20 1285969 1285969 G A SNPH Silent p.L252L 0.34 TCGA-KQ-A41P-01 20 1294025 1294025 C T SDCBP2 Missense_Mutation p.E115K 0.34 tolerated(0.44) benign(0.212) TCGA-KQ-A41P-01 20 18296434 18296434 C T ZNF133 Silent p.L312L 0.16 TCGA-KQ-A41P-01 20 20601216 20601216 C T RALGAPA2 Missense_Mutation p.R431K 0.50 tolerated(0.45) benign(0.196) TCGA-KQ-A41P-01 20 2637798 2637798 G C NOP56 Missense_Mutation p.K451N 0.40 tolerated(0.06) benign(0.403) TCGA-KQ-A41P-01 20 29993943 29993943 G T DEFB121 Missense_Mutation p.L5I 0.25 deleterious(0.02) unknown(0) TCGA-KQ-A41P-01 20 30897869 30897869 C G KIF3B Missense_Mutation p.Q97E 0.10 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41P-01 20 30897972 30897972 C G KIF3B Missense_Mutation p.S131C 0.12 deleterious(0) benign(0.041) TCGA-KQ-A41P-01 20 30898226 30898226 C T KIF3B Missense_Mutation p.H216Y 0.09 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 20 30898654 30898654 C A KIF3B Missense_Mutation p.F358L 0.17 deleterious(0.03) possibly_damaging(0.532) TCGA-KQ-A41P-01 20 32436342 32436342 C G CHMP4B Nonsense_Mutation p.S87* 0.56 TCGA-KQ-A41P-01 20 36775172 36775172 C G TGM2 Missense_Mutation p.C269S 0.27 deleterious(0.01) benign(0.352) TCGA-KQ-A41P-01 20 3684060 3684060 C G SIGLEC1 Missense_Mutation p.E338Q 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41P-01 20 40040854 40040854 C G CHD6 Missense_Mutation p.G2394A 0.14 tolerated(0.07) benign(0.007) TCGA-KQ-A41P-01 20 4776583 4776583 G C RASSF2 Silent p.L55L 0.43 TCGA-KQ-A41P-01 20 49209003 49209003 G A FAM65C Nonsense_Mutation p.Q815* 0.36 TCGA-KQ-A41P-01 20 61598197 61598197 G A SLC17A9 Intron 0.50 TCGA-KQ-A41P-01 20 62660773 62660773 G C PRPF6 Missense_Mutation p.Q825H 0.33 deleterious(0.03) possibly_damaging(0.827) TCGA-KQ-A41P-01 20 854978 854978 C G ANGPT4 Missense_Mutation p.D434H 0.22 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 21 27840903 27840903 A G CYYR1 Silent p.L128L 0.22 TCGA-KQ-A41P-01 21 34056376 34056376 T C SYNJ1 Missense_Mutation p.N430S 0.27 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41P-01 21 43704775 43704775 C T ABCG1 Silent p.L280L 0.15 TCGA-KQ-A41P-01 21 47831859 47831859 C T PCNT Missense_Mutation p.H1958Y 0.40 benign(0.403) TCGA-KQ-A41P-01 22 20383855 20383855 C A AC023490.1 3'Flank 0.57 TCGA-KQ-A41P-01 22 22735567 22735567 C G IGLV1-44 Missense_Mutation p.I68M 0.52 deleterious_low_confidence(0) possibly_damaging(0.488) TCGA-KQ-A41P-01 22 32269279 32269279 C G DEPDC5 Missense_Mutation p.S1166C 0.23 tolerated(0.1) possibly_damaging(0.823) TCGA-KQ-A41P-01 22 37622735 37622735 T G RAC2 Missense_Mutation p.K186T 0.29 deleterious_low_confidence(0.04) benign(0.002) TCGA-KQ-A41P-01 22 38254712 38254712 G C EIF3L Missense_Mutation p.E134Q 0.23 deleterious(0) probably_damaging(0.961) TCGA-KQ-A41P-01 22 40661345 40661345 G A TNRC6B Missense_Mutation p.D371N 0.17 tolerated(0.2) possibly_damaging(0.735) TCGA-KQ-A41P-01 22 42525827 42525827 C T CYP2D6 Missense_Mutation p.E89K 0.56 deleterious(0.01) possibly_damaging(0.78) TCGA-KQ-A41P-01 22 50686424 50686424 C T HDAC10 Missense_Mutation p.R411H 0.33 tolerated(0.08) benign(0.017) TCGA-KQ-A41P-01 22 50695570 50695570 C A MAPK12 Nonsense_Mutation p.E123* 0.22 TCGA-KQ-A41P-01 22 50845163 50845163 G C PPP6R2 Missense_Mutation p.Q91H 0.16 deleterious(0.03) probably_damaging(0.917) TCGA-KQ-A41P-01 2 121106682 121106682 C T INHBB Silent p.L152L 0.32 TCGA-KQ-A41P-01 2 122216525 122216525 T G CLASP1 Missense_Mutation p.K402T 0.46 deleterious(0) possibly_damaging(0.88) TCGA-KQ-A41P-01 2 15432878 15432878 C T NBAS Missense_Mutation p.E1604K 0.47 tolerated(0.05) benign(0.159) TCGA-KQ-A41P-01 2 1652720 1652720 G A PXDN Silent p.S944S 0.24 TCGA-KQ-A41P-01 2 168102447 168102447 A C XIRP2 Missense_Mutation p.E1515D 0.39 probably_damaging(0.999) TCGA-KQ-A41P-01 2 170136996 170136996 C A LRP2 Missense_Mutation p.R402L 0.40 possibly_damaging(0.614) TCGA-KQ-A41P-01 2 176043904 176043904 G A ATP5G3 Silent p.I65I 0.44 TCGA-KQ-A41P-01 2 179395276 179395276 C G TTN Missense_Mutation p.E35356Q 0.83 TCGA-KQ-A41P-01 2 179498547 179498547 A C TTN Missense_Mutation p.L14227V 0.34 TCGA-KQ-A41P-01 2 179610829 179610829 T G TTN Intron 0.05 TCGA-KQ-A41P-01 2 18112258 18112258 C G KCNS3 5'UTR 0.50 TCGA-KQ-A41P-01 2 18113448 18113448 C G KCNS3 Missense_Mutation p.I391M 0.48 tolerated(0.06) possibly_damaging(0.658) TCGA-KQ-A41P-01 2 182386952 182386952 A G ITGA4 Missense_Mutation p.S653G 0.35 tolerated(0.26) benign(0.02) TCGA-KQ-A41P-01 2 225368470 225368470 C G CUL3 Missense_Mutation p.D426H 0.59 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 2 231152636 231152636 T G SP140 Missense_Mutation p.F559V 0.25 tolerated(0.06) benign(0.146) TCGA-KQ-A41P-01 2 234368457 234368457 G A DGKD Missense_Mutation p.D917N 0.76 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 2 55870295 55870295 G A PNPT1 Silent p.I689I 0.10 TCGA-KQ-A41P-01 2 61528241 61528241 G A USP34 Nonsense_Mutation p.Q1325* 0.22 TCGA-KQ-A41P-01 2 71650995 71650995 G A ZNF638 Missense_Mutation p.E1451K 0.34 deleterious(0.02) possibly_damaging(0.697) TCGA-KQ-A41P-01 2 79348029 79348029 G C REG1A Silent p.L14L 0.31 TCGA-KQ-A41P-01 2 8931309 8931309 T C KIDINS220 Missense_Mutation p.D441G 0.49 tolerated(0.07) probably_damaging(1) TCGA-KQ-A41P-01 3 101304280 101304280 G C PCNP Splice_Site p.X94_splice 0.47 TCGA-KQ-A41P-01 3 108278824 108278824 C T KIAA1524 Missense_Mutation p.E627K 0.24 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41P-01 3 111958723 111958723 C G SLC9C1 Missense_Mutation p.M470I 0.27 tolerated(0.27) benign(0.003) TCGA-KQ-A41P-01 3 112255308 112255308 C T ATG3 Intron 0.20 TCGA-KQ-A41P-01 3 112357178 112357178 C T CCDC80 Silent p.Q525Q 0.34 TCGA-KQ-A41P-01 3 113004260 113004260 C T BOC Missense_Mutation p.T1002I 0.27 tolerated_low_confidence(0.1) benign(0.003) TCGA-KQ-A41P-01 3 113098205 113098205 G C WDR52 Missense_Mutation p.S749C 0.51 tolerated(0.18) benign(0.023) TCGA-KQ-A41P-01 3 113677340 113677340 C T ZDHHC23 Nonsense_Mutation p.Q391* 0.14 TCGA-KQ-A41P-01 3 14212037 14212037 C G XPC Missense_Mutation p.D105H 0.03 tolerated_low_confidence(0.13) benign(0.326) TCGA-KQ-A41P-01 3 150176259 150176259 G C TSC22D2 Missense_Mutation p.E727Q 0.31 deleterious(0) possibly_damaging(0.728) TCGA-KQ-A41P-01 3 152554634 152554634 G A P2RY1 Missense_Mutation p.E355K 0.06 tolerated(0.2) possibly_damaging(0.453) TCGA-KQ-A41P-01 3 173322582 173322582 T G NLGN1 Missense_Mutation p.I65S 0.08 tolerated(0.15) benign(0.027) TCGA-KQ-A41P-01 3 180377515 180377515 G A CCDC39 Nonsense_Mutation p.Q187* 0.25 TCGA-KQ-A41P-01 3 189712006 189712006 C T LEPREL1 Missense_Mutation p.E234K 0.59 deleterious(0) probably_damaging(0.924) TCGA-KQ-A41P-01 3 47467542 47467542 G A SCAP Silent p.L285L 0.30 TCGA-KQ-A41P-01 3 49314171 49314171 C T C3orf62 Silent p.Q45Q 0.43 TCGA-KQ-A41P-01 3 52233317 52233317 G C ALAS1 Missense_Mutation p.Q20H 0.42 tolerated(0.17) probably_damaging(0.989) TCGA-KQ-A41P-01 3 53769491 53769491 C T CACNA1D Silent p.A924A 0.35 TCGA-KQ-A41P-01 3 78695330 78695330 C T ROBO1 Silent p.Q950Q 0.23 TCGA-KQ-A41P-01 3 8590590 8590590 G A LMCD1 Splice_Site p.X241_splice 0.14 TCGA-KQ-A41P-01 3 89259290 89259290 C G EPHA3 Missense_Mutation p.T145S 0.11 deleterious(0) probably_damaging(0.991) TCGA-KQ-A41P-01 3 89259300 89259300 T C EPHA3 Silent p.A148A 0.09 TCGA-KQ-A41P-01 3 9426235 9426235 C T THUMPD3 Nonsense_Mutation p.R463* 0.07 TCGA-KQ-A41P-01 4 103537695 103537695 C G NFKB1 Missense_Mutation p.L952V 0.23 deleterious_low_confidence(0.01) benign(0.199) TCGA-KQ-A41P-01 4 103723730 103723730 G C UBE2D3 Missense_Mutation p.F64L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-KQ-A41P-01 4 107956672 107956672 G C DKK2 Nonsense_Mutation p.S26* 0.56 TCGA-KQ-A41P-01 4 110437758 110437758 G C SEC24B Missense_Mutation p.L696F 0.56 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 4 113474997 113474997 C T C4orf21 Silent p.L1780L 0.22 TCGA-KQ-A41P-01 4 128554251 128554251 C T INTU Missense_Mutation p.S21F 0.29 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-KQ-A41P-01 4 129857825 129857825 C G SCLT1 Missense_Mutation p.R605T 0.38 tolerated(0.08) benign(0.133) TCGA-KQ-A41P-01 4 129864262 129864262 C T SCLT1 Silent p.G507G 0.08 TCGA-KQ-A41P-01 4 129864338 129864338 G A SCLT1 Missense_Mutation p.S482L 0.53 deleterious(0.02) possibly_damaging(0.65) TCGA-KQ-A41P-01 4 146576534 146576534 C A MMAA Missense_Mutation p.S402Y 0.11 deleterious(0) possibly_damaging(0.806) TCGA-KQ-A41P-01 4 169013791 169013791 G A ANXA10 5'UTR 0.51 TCGA-KQ-A41P-01 4 170037711 170037711 G A SH3RF1 Silent p.L616L 0.26 TCGA-KQ-A41P-01 4 186379657 186379657 G C CCDC110 Nonsense_Mutation p.S695* 0.35 TCGA-KQ-A41P-01 4 186380652 186380652 G C CCDC110 Missense_Mutation p.I363M 0.36 deleterious(0.02) possibly_damaging(0.664) TCGA-KQ-A41P-01 4 26487278 26487278 C G CCKAR Missense_Mutation p.D203H 0.48 tolerated(0.11) possibly_damaging(0.676) TCGA-KQ-A41P-01 4 46737190 46737190 C T COX7B2 Missense_Mutation p.R7K 0.52 tolerated(0.65) benign(0.013) TCGA-KQ-A41P-01 4 55595513 55595513 T C KIT Missense_Mutation p.V668A 0.40 deleterious(0.01) probably_damaging(0.968) TCGA-KQ-A41P-01 4 5830231 5830231 G C CRMP1 Silent p.V596V 0.44 TCGA-KQ-A41P-01 4 5862887 5862887 G A CRMP1 Missense_Mutation p.A174V 0.45 deleterious(0.03) benign(0.307) TCGA-KQ-A41P-01 4 62863981 62863981 C T LPHN3 Silent p.I1063I 0.15 TCGA-KQ-A41P-01 4 69520865 69520865 A C UGT2B15 Silent p.T347T 0.30 TCGA-KQ-A41P-01 4 71554444 71554444 G A UTP3 Missense_Mutation p.R17Q 0.33 tolerated_low_confidence(0.21) benign(0.003) TCGA-KQ-A41P-01 5 114469713 114469713 C G TRIM36 Missense_Mutation p.E460Q 0.13 tolerated(0.26) benign(0.34) TCGA-KQ-A41P-01 5 137892270 137892270 C G HSPA9 Silent p.L611L 0.34 TCGA-KQ-A41P-01 5 138658375 138658375 G A MATR3 Missense_Mutation p.E623K 0.43 tolerated(0.55) benign(0.114) TCGA-KQ-A41P-01 5 140257349 140257349 G A PCDHA12 Silent p.P764P 0.31 TCGA-KQ-A41P-01 5 140432474 140432474 A G PCDHB1 Silent p.K473K 0.35 TCGA-KQ-A41P-01 5 140433304 140433304 C G PCDHB1 Missense_Mutation p.S750C 0.45 deleterious(0) benign(0.395) TCGA-KQ-A41P-01 5 141019570 141019570 G A RELL2 Missense_Mutation p.G196D 0.47 deleterious(0.03) benign(0.434) TCGA-KQ-A41P-01 5 142661410 142661410 T G NR3C1 3'UTR 0.38 TCGA-KQ-A41P-01 5 14358454 14358454 C T TRIO Silent p.L738L 0.41 TCGA-KQ-A41P-01 5 14419960 14419960 G T TRIO Missense_Mutation p.R1678L 0.42 benign(0) TCGA-KQ-A41P-01 5 148885149 148885149 G C CSNK1A1 Missense_Mutation p.N317K 0.15 deleterious_low_confidence(0.01) benign(0.05) TCGA-KQ-A41P-01 5 156670654 156670654 C G ITK Nonsense_Mutation p.S361* 0.34 TCGA-KQ-A41P-01 5 161322791 161322791 T G GABRA1 Missense_Mutation p.S326A 0.05 tolerated(0.44) probably_damaging(0.973) TCGA-KQ-A41P-01 5 170738557 170738557 G A TLX3 Nonsense_Mutation p.W277* 0.23 TCGA-KQ-A41P-01 5 33463913 33463913 G A TARS Missense_Mutation p.D664N 0.33 tolerated(0.46) benign(0.02) TCGA-KQ-A41P-01 5 41004968 41004968 A T MROH2B Missense_Mutation p.L1307M 0.32 tolerated(0.13) benign(0.173) TCGA-KQ-A41P-01 5 41861486 41861486 G T OXCT1 Missense_Mutation p.P70T 0.36 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 5 42718965 42718965 G A GHR Silent p.E452E 0.37 TCGA-KQ-A41P-01 5 89924386 89924386 G A GPR98 Missense_Mutation p.E416K 0.28 possibly_damaging(0.636) TCGA-KQ-A41P-01 5 95761560 95761560 G T PCSK1 Silent p.L120L 0.28 TCGA-KQ-A41P-01 5 99871657 99871657 C T FAM174A Silent p.V141V 0.20 TCGA-KQ-A41P-01 6 102069943 102069943 G A GRIK2 Missense_Mutation p.D79N 0.84 deleterious(0.04) probably_damaging(0.999) TCGA-KQ-A41P-01 6 112375585 112375585 C G WISP3 Missense_Mutation p.L27V 0.87 tolerated(0.12) benign(0.021) TCGA-KQ-A41P-01 6 123319061 123319061 C T CLVS2 Silent p.L47L 0.10 TCGA-KQ-A41P-01 6 126243869 126243869 G C NCOA7 Missense_Mutation p.W804C 0.80 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41P-01 6 134210650 134210650 G A TCF21 Missense_Mutation p.E39K 0.75 tolerated(0.21) benign(0.302) TCGA-KQ-A41P-01 6 138656176 138656176 C T KIAA1244 Nonsense_Mutation p.Q2065* 0.89 TCGA-KQ-A41P-01 6 144872196 144872196 G T UTRN Missense_Mutation p.M2302I 0.17 tolerated(0.21) benign(0) TCGA-KQ-A41P-01 6 146351188 146351188 G C GRM1 Missense_Mutation p.D179H 0.19 tolerated(0.21) benign(0.022) TCGA-KQ-A41P-01 6 157522064 157522064 C T ARID1B Nonsense_Mutation p.Q1446* 0.86 TCGA-KQ-A41P-01 6 167549792 167549792 C G CCR6 Nonsense_Mutation p.S25* 0.80 TCGA-KQ-A41P-01 6 170102842 170102842 C T C6orf120 Missense_Mutation p.S96L 0.90 deleterious(0) probably_damaging(0.962) TCGA-KQ-A41P-01 6 17616866 17616866 G A NUP153 Missense_Mutation p.S1412L 0.47 deleterious(0.01) possibly_damaging(0.474) TCGA-KQ-A41P-01 6 30573999 30573999 G C PPP1R10 Missense_Mutation p.S219C 0.78 tolerated(0.06) probably_damaging(0.996) TCGA-KQ-A41P-01 6 30595655 30595655 C T ATAT1 Silent p.F84F 0.78 TCGA-KQ-A41P-01 6 30879010 30879010 C G GTF2H4 Silent p.L212L 0.84 TCGA-KQ-A41P-01 6 31548477 31548477 C T LTB 3'UTR 0.38 TCGA-KQ-A41P-01 6 32947780 32947780 G C BRD2 Missense_Mutation p.E708Q 0.85 deleterious(0) benign(0.403) TCGA-KQ-A41P-01 6 36930816 36930818 CTT - PI16 In_Frame_Del p.S235del 0.60 TCGA-KQ-A41P-01 6 43323783 43323783 G A ZNF318 Missense_Mutation p.S430L 0.81 benign(0.166) TCGA-KQ-A41P-01 6 44929511 44929511 C T SUPT3H Missense_Mutation p.E198K 0.38 tolerated(0.38) probably_damaging(0.969) TCGA-KQ-A41P-01 6 51897906 51897906 G T PKHD1 Missense_Mutation p.L1096I 0.28 deleterious(0.04) possibly_damaging(0.877) TCGA-KQ-A41P-01 6 87966838 87966838 C G ZNF292 Nonsense_Mutation p.S1164* 0.79 TCGA-KQ-A41P-01 6 96969768 96969768 G C UFL1 Missense_Mutation p.E7Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-KQ-A41P-01 6 9900667 9900667 C G OFCC1 Intron 0.42 TCGA-KQ-A41P-01 7 100205571 100205571 C T PCOLCE Silent p.L399L 0.13 TCGA-KQ-A41P-01 7 101840330 101840330 G A CUX1 Missense_Mutation p.E558K 0.10 deleterious(0.01) unknown(0) TCGA-KQ-A41P-01 7 122809301 122809301 C T SLC13A1 Missense_Mutation p.E152K 0.11 deleterious(0) possibly_damaging(0.861) TCGA-KQ-A41P-01 7 128655128 128655128 C A TNPO3 Nonsense_Mutation p.E153* 0.33 TCGA-KQ-A41P-01 7 135330313 135330313 G A NUP205 Silent p.S1927S 0.25 TCGA-KQ-A41P-01 7 13978873 13978873 T A ETV1 Splice_Site p.X79_splice 0.14 TCGA-KQ-A41P-01 7 148876959 148876959 C T ZNF398 3'UTR 0.33 TCGA-KQ-A41P-01 7 149191098 149191098 C T ZNF746 Missense_Mutation p.E130K 0.23 deleterious(0) possibly_damaging(0.607) TCGA-KQ-A41P-01 7 150774982 150774982 G A FASTK Silent p.F341F 0.55 TCGA-KQ-A41P-01 7 21628186 21628186 G A DNAH11 Missense_Mutation p.M635I 0.11 benign(0) TCGA-KQ-A41P-01 7 23401204 23401204 G A IGF2BP3 Missense_Mutation p.S117L 0.28 deleterious(0.01) benign(0.21) TCGA-KQ-A41P-01 7 26237009 26237009 C G HNRNPA2B1 Missense_Mutation p.D76H 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-KQ-A41P-01 7 27224386 27224386 G C HOXA11 Missense_Mutation p.F126L 0.26 tolerated(0.1) possibly_damaging(0.874) TCGA-KQ-A41P-01 7 31692218 31692218 T C CCDC129 Silent p.T996T 0.32 TCGA-KQ-A41P-01 7 32598174 32598174 C G AVL9 Missense_Mutation p.L205V 0.16 tolerated(0.21) possibly_damaging(0.741) TCGA-KQ-A41P-01 7 39503870 39503870 G A POU6F2 Missense_Mutation p.G554D 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-KQ-A41P-01 7 4876160 4876160 C T RADIL Silent p.R204R 0.38 TCGA-KQ-A41P-01 7 4876217 4876217 C A RADIL Silent p.R185R 0.33 TCGA-KQ-A41P-01 7 73971982 73971982 G A GTF2IRD1 Silent p.A711A 0.31 TCGA-KQ-A41P-01 7 86813922 86813922 G A DMTF1 Missense_Mutation p.E344K 0.20 tolerated(0.47) possibly_damaging(0.715) TCGA-KQ-A41P-01 7 89900872 89900872 C G C7orf63 Missense_Mutation p.Q189E 0.19 tolerated(0.06) benign(0.047) TCGA-KQ-A41P-01 7 92952941 92952941 T A CCDC132 Missense_Mutation p.M625K 0.21 deleterious(0.03) possibly_damaging(0.893) TCGA-KQ-A41P-01 7 94059766 94059766 T G COL1A2 3'UTR 0.21 TCGA-KQ-A41P-01 7 94947686 94947686 G A PON1 Nonsense_Mutation p.R32* 0.27 TCGA-KQ-A41P-01 8 109215676 109215676 T G EIF3E Missense_Mutation p.N373T 0.22 deleterious(0) probably_damaging(1) TCGA-KQ-A41P-01 8 110980794 110980794 A C KCNV1 Missense_Mutation p.C342W 0.24 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41P-01 8 113236944 113236944 G A CSMD3 3'UTR 0.11 TCGA-KQ-A41P-01 8 125463171 125463171 G C TRMT12 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) benign(0.019) TCGA-KQ-A41P-01 8 142432330 142432330 C G PTP4A3 5'UTR 0.10 TCGA-KQ-A41P-01 8 144392357 144392357 C A TOP1MT Missense_Mutation p.E528D 0.95 tolerated(0.24) benign(0.003) TCGA-KQ-A41P-01 8 145003400 145003400 G A PLEC Missense_Mutation p.S1181F 0.32 unknown(0) TCGA-KQ-A41P-01 8 145726094 145726094 C T PPP1R16A Missense_Mutation p.A286V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41P-01 8 53554922 53554922 C T RB1CC1 Missense_Mutation p.M1442I 0.23 tolerated(0.11) benign(0.001) TCGA-KQ-A41P-01 8 59492297 59492297 C G SDCBP Missense_Mutation p.L232V 0.05 tolerated(0.11) possibly_damaging(0.775) TCGA-KQ-A41P-01 9 122011275 122011275 C A BRINP1 Missense_Mutation p.K124N 0.15 deleterious(0) benign(0.188) TCGA-KQ-A41P-01 9 138557738 138557738 G A LCN9 Silent p.P169P 0.27 TCGA-KQ-A41P-01 9 139994264 139994264 G A MAN1B1 Missense_Mutation p.E283K 0.09 deleterious(0.03) possibly_damaging(0.869) TCGA-KQ-A41P-01 9 27524640 27524640 C T IFNK Silent p.T102T 0.11 TCGA-KQ-A41P-01 9 32634550 32634550 G C TAF1L Nonsense_Mutation p.S343* 0.44 TCGA-KQ-A41P-01 9 84532818 84532818 G C SPATA31D5P RNA 0.75 TCGA-KQ-A41P-01 X 112058802 112058802 T G AMOT Missense_Mutation p.Q392H 0.36 unknown(0) TCGA-KQ-A41P-01 X 134856749 134856749 G A CT45A1 Missense_Mutation p.R175Q 0.35 tolerated(0.29) benign(0.002) TCGA-KQ-A41P-01 X 16142334 16142334 C T GRPR Silent p.D86D 0.83 TCGA-KQ-A41P-01 X 1712976 1712976 C T AKAP17A Silent p.F207F 0.41 TCGA-KQ-A41P-01 X 32827620 32827620 G A DMD Silent p.L213L 0.36 TCGA-KQ-A41P-01 X 44929115 44929116 - C KDM6A Frame_Shift_Ins p.N739Tfs*11 0.90 TCGA-KQ-A41P-01 X 69424219 69424219 G C DGAT2L6 Missense_Mutation p.E238Q 0.43 deleterious(0.05) probably_damaging(0.95) TCGA-KQ-A41P-01 X 79932821 79932821 C G BRWD3 Missense_Mutation p.E1566Q 0.40 tolerated_low_confidence(0.19) benign(0.115) TCGA-KQ-A41Q-01 10 104119115 104119115 C T GBF1 Missense_Mutation p.S367F 0.30 deleterious(0.01) possibly_damaging(0.573) TCGA-KQ-A41Q-01 10 125447475 125447475 C T GPR26 Silent p.I271I 0.16 TCGA-KQ-A41Q-01 10 63170335 63170335 C G TMEM26 Missense_Mutation p.Q284H 0.32 tolerated(0.08) benign(0.269) TCGA-KQ-A41Q-01 10 64573588 64573588 G A EGR2 Silent p.N270N 0.23 TCGA-KQ-A41Q-01 10 75289990 75289990 C T USP54 Missense_Mutation p.R580Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41Q-01 10 81317242 81317242 C G SFTPA2 Missense_Mutation p.R157T 0.25 tolerated(0.05) benign(0.095) TCGA-KQ-A41Q-01 10 99212255 99212255 C A ZDHHC16 Nonsense_Mutation p.C174* 0.29 TCGA-KQ-A41Q-01 11 10580771 10580771 C G LYVE1 Missense_Mutation p.E286Q 0.28 tolerated(0.18) possibly_damaging(0.649) TCGA-KQ-A41Q-01 11 123513204 123513204 C A SCN3B Missense_Mutation p.R132L 0.38 tolerated(0.12) benign(0.232) TCGA-KQ-A41Q-01 11 1248106 1248106 G A MUC5B Missense_Mutation p.R154Q 0.50 unknown(0) TCGA-KQ-A41Q-01 11 125513738 125513738 G T CHEK1 Missense_Mutation p.G289V 0.25 tolerated(0.1) benign(0.002) TCGA-KQ-A41Q-01 11 1272463 1272463 G C MUC5B Missense_Mutation p.E4785Q 0.28 unknown(0) TCGA-KQ-A41Q-01 11 3726529 3726529 G C NUP98 Missense_Mutation p.R995G 0.45 tolerated(0.49) benign(0.175) TCGA-KQ-A41Q-01 11 47746078 47746078 C T FNBP4 Missense_Mutation p.G754E 0.21 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 11 57575682 57575682 C T CTNND1 Missense_Mutation p.S670L 0.13 deleterious(0) possibly_damaging(0.675) TCGA-KQ-A41Q-01 11 60296857 60296857 C T MS4A13 Missense_Mutation p.S109L 0.10 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 11 61605360 61605360 C T FADS2 Silent p.N106N 0.71 TCGA-KQ-A41Q-01 11 61732365 61732365 T C FTH1 Splice_Site p.X130_splice 0.54 TCGA-KQ-A41Q-01 11 62430517 62430517 G A C11orf48 3'UTR 0.20 TCGA-KQ-A41Q-01 11 65386063 65386063 G C PCNXL3 Silent p.R410R 0.26 TCGA-KQ-A41Q-01 11 8715632 8715632 G A ST5 3'UTR 0.30 TCGA-KQ-A41Q-01 11 89768595 89768595 G T TRIM49C Missense_Mutation p.K72N 0.24 tolerated(1) benign(0.016) TCGA-KQ-A41Q-01 12 100707302 100707302 G A SCYL2 Missense_Mutation p.D319N 0.50 tolerated(0.2) benign(0.345) TCGA-KQ-A41Q-01 12 118472108 118472108 T A WSB2 Nonsense_Mutation p.K370* 0.21 TCGA-KQ-A41Q-01 12 120142238 120142238 C G CIT Missense_Mutation p.C1745S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41Q-01 12 133331326 133331326 G A ANKLE2 Missense_Mutation p.A192V 0.28 tolerated(0.34) benign(0.007) TCGA-KQ-A41Q-01 12 49165690 49165690 G C ADCY6 Missense_Mutation p.L952V 0.17 deleterious(0) benign(0.358) TCGA-KQ-A41Q-01 12 52940081 52940081 G A KRT71 Silent p.S438S 0.25 TCGA-KQ-A41Q-01 12 55042117 55042117 C A DCD 5'UTR 0.35 TCGA-KQ-A41Q-01 12 56214322 56214322 G C ORMDL2 3'UTR 0.29 TCGA-KQ-A41Q-01 12 56515472 56515472 G T ZC3H10 Nonsense_Mutation p.G376* 0.24 TCGA-KQ-A41Q-01 12 6436946 6436946 A G PLEKHG6 Missense_Mutation p.M733V 0.50 deleterious_low_confidence(0.01) benign(0.003) TCGA-KQ-A41Q-01 12 85255494 85255494 G C SLC6A15 Missense_Mutation p.L704V 0.22 tolerated_low_confidence(0.27) benign(0.001) TCGA-KQ-A41Q-01 13 48947595 48947596 - A RB1 Frame_Shift_Ins p.Q395Tfs*11 0.23 TCGA-KQ-A41Q-01 14 102514236 102514236 G A DYNC1H1 Silent p.K4363K 0.22 TCGA-KQ-A41Q-01 14 103410783 103410783 C T CDC42BPB Missense_Mutation p.E1285K 0.30 deleterious(0.03) benign(0.415) TCGA-KQ-A41Q-01 14 103438301 103438301 G A CDC42BPB Silent p.D613D 0.24 TCGA-KQ-A41Q-01 14 104027432 104027432 C G BAG5 Missense_Mutation p.E65Q 0.42 tolerated(0.07) probably_damaging(0.951) TCGA-KQ-A41Q-01 14 104028348 104028348 C G BAG5 5'UTR 0.48 TCGA-KQ-A41Q-01 14 105404808 105404808 C T AHNAK2 Silent p.E5660E 0.42 TCGA-KQ-A41Q-01 14 20248638 20248638 C T OR4M1 Missense_Mutation p.P53S 0.14 tolerated(0.58) benign(0.012) TCGA-KQ-A41Q-01 14 20249081 20249081 C T OR4M1 Silent p.I200I 0.23 TCGA-KQ-A41Q-01 14 81744519 81744519 G C STON2 Missense_Mutation p.S379C 0.28 deleterious(0.01) benign(0.006) TCGA-KQ-A41Q-01 14 94962802 94962802 G C SERPINA12 Missense_Mutation p.I271M 0.20 tolerated(0.07) benign(0.03) TCGA-KQ-A41Q-01 15 23932424 23932424 C G NDN 5'UTR 0.33 TCGA-KQ-A41Q-01 15 40018923 40018923 G A FSIP1 Missense_Mutation p.P306L 0.22 tolerated(0.05) benign(0.176) TCGA-KQ-A41Q-01 15 78215340 78215340 C T RP11-114H24.7 3'Flank 0.13 TCGA-KQ-A41Q-01 15 83455983 83455983 C G FSD2 Missense_Mutation p.E54Q 0.35 tolerated(0.16) benign(0.167) TCGA-KQ-A41Q-01 16 31088969 31088969 C T ZNF646 Missense_Mutation p.P442S 0.13 tolerated(0.57) benign(0.002) TCGA-KQ-A41Q-01 16 31195709 31195709 G C FUS Missense_Mutation p.G172A 0.18 tolerated(0.43) unknown(0) TCGA-KQ-A41Q-01 16 50756557 50756557 C T NOD2 Silent p.D913D 0.20 TCGA-KQ-A41Q-01 16 57500100 57500100 C T POLR2C Silent p.L73L 0.21 TCGA-KQ-A41Q-01 16 61689434 61689434 G C CDH8 Missense_Mutation p.P616A 0.30 tolerated(0.23) probably_damaging(0.991) TCGA-KQ-A41Q-01 16 67236566 67236566 C G ELMO3 Missense_Mutation p.L532V 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-KQ-A41Q-01 16 90160848 90160848 C T TUBB8P7 RNA 0.24 TCGA-KQ-A41Q-01 17 2573454 2573454 C T PAFAH1B1 Intron 0.33 TCGA-KQ-A41Q-01 17 27001424 27001424 C T SUPT6H Missense_Mutation p.S78L 0.33 deleterious(0.04) benign(0.184) TCGA-KQ-A41Q-01 17 35376310 35376310 C T AATF Nonsense_Mutation p.R469* 0.16 TCGA-KQ-A41Q-01 17 48696225 48696225 C T CACNA1G Silent p.S1879S 0.17 TCGA-KQ-A41Q-01 17 57760459 57760459 C G CLTC Missense_Mutation p.R1293G 0.14 deleterious(0.04) benign(0.02) TCGA-KQ-A41Q-01 17 58511495 58511495 G A C17orf64 3'Flank 0.23 TCGA-KQ-A41Q-01 17 61897624 61897624 C T FTSJ3 Silent p.K749K 0.15 TCGA-KQ-A41Q-01 17 61901258 61901258 C T FTSJ3 Silent p.L403L 0.12 TCGA-KQ-A41Q-01 17 61901285 61901285 C T FTSJ3 Silent p.Q394Q 0.10 TCGA-KQ-A41Q-01 17 61902079 61902079 C G FTSJ3 Missense_Mutation p.E279Q 0.15 tolerated(0.14) possibly_damaging(0.555) TCGA-KQ-A41Q-01 17 61902286 61902286 C T FTSJ3 Missense_Mutation p.E239K 0.17 deleterious(0) possibly_damaging(0.753) TCGA-KQ-A41Q-01 17 65850547 65850547 G A BPTF Missense_Mutation p.D369N 0.18 possibly_damaging(0.724) TCGA-KQ-A41Q-01 17 66252988 66252988 G A AMZ2 Missense_Mutation p.D321N 0.11 tolerated(0.19) benign(0.001) TCGA-KQ-A41Q-01 17 7144702 7144702 C T GABARAP Missense_Mutation p.V83I 0.31 tolerated(0.28) benign(0) TCGA-KQ-A41Q-01 17 74080103 74080103 C T EXOC7 Missense_Mutation p.G697R 0.20 tolerated(0.76) benign(0.037) TCGA-KQ-A41Q-01 17 7417466 7417466 C G POLR2A Missense_Mutation p.I1961M 0.32 unknown(0) TCGA-KQ-A41Q-01 17 78059903 78059903 C T CCDC40 Silent p.R779R 0.19 TCGA-KQ-A41Q-01 18 13114182 13114182 C T CEP192 Silent p.L2407L 0.29 TCGA-KQ-A41Q-01 18 3879204 3879204 G A DLGAP1 Missense_Mutation p.R289W 0.42 deleterious(0) probably_damaging(0.983) TCGA-KQ-A41Q-01 18 55362733 55362733 C G ATP8B1 Missense_Mutation p.E244Q 0.36 tolerated(0.46) possibly_damaging(0.561) TCGA-KQ-A41Q-01 18 6859845 6859845 C T ARHGAP28 Silent p.D66D 0.31 TCGA-KQ-A41Q-01 19 13049464 13049464 G A CALR 5'UTR 0.40 TCGA-KQ-A41Q-01 19 15918704 15918704 G A OR10H1 Silent p.T48T 0.30 TCGA-KQ-A41Q-01 19 41215975 41215975 C T ADCK4 Missense_Mutation p.R119H 0.27 tolerated(0.18) benign(0.001) TCGA-KQ-A41Q-01 19 41268831 41268831 C T SNRPA Missense_Mutation p.P151L 0.15 tolerated(0.07) probably_damaging(0.981) TCGA-KQ-A41Q-01 19 44777398 44777398 G A ZNF233 Silent p.Q195Q 0.11 TCGA-KQ-A41Q-01 19 46094162 46094162 G A GPR4 Silent p.L321L 0.09 TCGA-KQ-A41Q-01 19 46324658 46324658 C G SYMPK Missense_Mutation p.M959I 0.08 deleterious(0.02) benign(0.069) TCGA-KQ-A41Q-01 19 47241474 47241478 TTCAG - STRN4 Frame_Shift_Del p.L135Vfs*81 0.16 TCGA-KQ-A41Q-01 19 48994458 48994458 G T LMTK3 Missense_Mutation p.P1454T 0.40 unknown(0) TCGA-KQ-A41Q-01 19 49391423 49391423 G A TULP2 Silent p.G244G 0.19 TCGA-KQ-A41Q-01 19 49965915 49965915 G A ALDH16A1 Missense_Mutation p.R334Q 0.16 tolerated(0.18) benign(0.023) TCGA-KQ-A41Q-01 19 50863119 50863119 C A NAPSA Missense_Mutation p.R223S 0.10 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 19 5244206 5244206 G A PTPRS Missense_Mutation p.P426S 0.30 deleterious(0) possibly_damaging(0.742) TCGA-KQ-A41Q-01 19 52538162 52538162 C G ZNF432 Missense_Mutation p.R257T 0.34 deleterious(0.01) benign(0.138) TCGA-KQ-A41Q-01 19 52538328 52538328 C A ZNF432 Nonsense_Mutation p.E202* 0.31 TCGA-KQ-A41Q-01 19 58572991 58572991 A G ZNF135 Missense_Mutation p.E38G 0.19 deleterious(0) probably_damaging(0.991) TCGA-KQ-A41Q-01 1 11561483 11561483 C A PTCHD2 Missense_Mutation p.S145Y 0.41 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-KQ-A41Q-01 1 11708841 11708841 G A FBXO2 Silent p.V267V 0.13 TCGA-KQ-A41Q-01 1 150818775 150818775 T C ARNT Missense_Mutation p.D64G 0.29 deleterious(0.03) possibly_damaging(0.877) TCGA-KQ-A41Q-01 1 154841877 154841877 G T KCNN3 Silent p.L188L 0.17 TCGA-KQ-A41Q-01 1 162560228 162560228 C T UAP1 Missense_Mutation p.H429Y 0.11 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 1 170967299 170967299 C G MROH9 Missense_Mutation p.L494V 0.12 deleterious(0) probably_damaging(0.964) TCGA-KQ-A41Q-01 1 18149668 18149668 C T ACTL8 Silent p.I55I 0.25 TCGA-KQ-A41Q-01 1 186304467 186304467 C T TPR Intron 0.18 TCGA-KQ-A41Q-01 1 192153520 192153520 C G RGS18 Missense_Mutation p.Q182E 0.11 tolerated(0.45) benign(0.151) TCGA-KQ-A41Q-01 1 198721477 198721477 G A PTPRC Missense_Mutation p.V1103I 0.17 tolerated(0.11) benign(0.055) TCGA-KQ-A41Q-01 1 204379408 204379408 C T PPP1R15B Missense_Mutation p.E378K 0.20 tolerated(1) benign(0.001) TCGA-KQ-A41Q-01 1 226413494 226413494 C A MIXL1 Missense_Mutation p.S227Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41Q-01 1 227843393 227843393 G C ZNF678 Missense_Mutation p.R481T 0.20 deleterious(0.05) benign(0.246) TCGA-KQ-A41Q-01 1 248262935 248262935 C T OR2L13 Silent p.S86S 0.17 TCGA-KQ-A41Q-01 1 27087464 27087464 C A ARID1A Missense_Mutation p.P680T 0.25 unknown(0) TCGA-KQ-A41Q-01 1 27088659 27088659 C - ARID1A Frame_Shift_Del p.Q758Rfs*75 0.23 TCGA-KQ-A41Q-01 1 27094480 27094480 G T ARID1A Missense_Mutation p.G1063V 0.34 unknown(0) TCGA-KQ-A41Q-01 1 27099321 27099321 G A ARID1A Silent p.G1186G 0.44 TCGA-KQ-A41Q-01 1 42923004 42923014 TCTGGGGGCCC - PPCS Frame_Shift_Del p.S199Tfs*17 0.20 TCGA-KQ-A41Q-01 1 46978117 46978117 G A DMBX1 Missense_Mutation p.R362Q 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KQ-A41Q-01 1 6393576 6393576 C T ACOT7 Silent p.L167L 0.18 TCGA-KQ-A41Q-01 1 85331465 85331465 C G LPAR3 Missense_Mutation p.L113F 0.23 deleterious(0) probably_damaging(0.961) TCGA-KQ-A41Q-01 1 93646392 93646392 G A CCDC18 Missense_Mutation p.R38Q 0.17 tolerated_low_confidence(0.42) benign(0.011) TCGA-KQ-A41Q-01 1 95492794 95492794 C T ALG14 Missense_Mutation p.R104Q 0.15 tolerated(0.11) benign(0.025) TCGA-KQ-A41Q-01 20 3728896 3728896 G A HSPA12B Silent p.Q236Q 0.16 TCGA-KQ-A41Q-01 20 44693810 44693810 C G NCOA5 Missense_Mutation p.L229F 0.33 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 20 46265061 46265061 C G NCOA3 Nonsense_Mutation p.S644* 0.11 TCGA-KQ-A41Q-01 21 40665770 40665770 G C BRWD1 Silent p.L266L 0.20 TCGA-KQ-A41Q-01 21 40800279 40800279 C G LCA5L Missense_Mutation p.K47N 0.18 tolerated(0.14) benign(0.208) TCGA-KQ-A41Q-01 22 38259032 38259032 C T EIF3L Silent p.F164F 0.73 TCGA-KQ-A41Q-01 22 51012112 51012112 C T CPT1B Missense_Mutation p.V335M 0.30 deleterious(0.01) benign(0.253) TCGA-KQ-A41Q-01 2 108626903 108626903 C A SLC5A7 Silent p.L443L 0.26 TCGA-KQ-A41Q-01 2 125261893 125261893 G T CNTNAP5 Nonsense_Mutation p.E362* 0.44 TCGA-KQ-A41Q-01 2 179636044 179636044 A G TTN Silent p.D2670D 0.26 TCGA-KQ-A41Q-01 2 196722243 196722243 C T DNAH7 Missense_Mutation p.D2758N 0.25 deleterious(0) possibly_damaging(0.782) TCGA-KQ-A41Q-01 2 207459493 207459493 A T ADAM23 Missense_Mutation p.D704V 0.22 deleterious(0) probably_damaging(0.988) TCGA-KQ-A41Q-01 2 234680956 234680956 G A UGT1A4 Silent p.P452P 0.16 TCGA-KQ-A41Q-01 2 241500749 241500749 G A DUSP28 Missense_Mutation p.M132I 0.35 tolerated(0.49) benign(0.013) TCGA-KQ-A41Q-01 2 242756213 242756213 C T NEU4 Missense_Mutation p.T122M 0.24 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41Q-01 2 45808903 45808903 C A SRBD1 Nonsense_Mutation p.E288* 0.16 TCGA-KQ-A41Q-01 3 121345800 121345800 C T FBXO40 3'UTR 0.19 TCGA-KQ-A41Q-01 3 124165105 124165105 C T KALRN Silent p.F1135F 0.34 TCGA-KQ-A41Q-01 3 12434122 12434122 C T PPARG Missense_Mutation p.R164W 0.20 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 3 129285420 129285420 G A PLXND1 Nonsense_Mutation p.Q1381* 0.23 TCGA-KQ-A41Q-01 3 142215271 142215271 G A ATR Missense_Mutation p.L1944F 0.20 deleterious(0.01) possibly_damaging(0.871) TCGA-KQ-A41Q-01 3 152553928 152553928 C T P2RY1 Silent p.F119F 0.32 TCGA-KQ-A41Q-01 3 17053338 17053338 G T PLCL2 Missense_Mutation p.D708Y 0.31 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 3 183860837 183860837 C T EIF2B5 Intron 0.26 TCGA-KQ-A41Q-01 3 184573593 184573593 T C VPS8 Missense_Mutation p.V377A 0.20 deleterious(0) possibly_damaging(0.524) TCGA-KQ-A41Q-01 3 185985551 185985551 C T DGKG Missense_Mutation p.E378K 0.14 tolerated(0.87) benign(0.297) TCGA-KQ-A41Q-01 3 186272056 186272056 C T TBCCD1 Missense_Mutation p.A511T 0.14 deleterious(0) possibly_damaging(0.893) TCGA-KQ-A41Q-01 3 190321956 190321956 T G IL1RAP Missense_Mutation p.I35S 0.16 deleterious(0) possibly_damaging(0.766) TCGA-KQ-A41Q-01 3 32806176 32806183 GGTAAGCG - CNOT10 Frame_Shift_Del p.K688Pfs*30 0.21 TCGA-KQ-A41Q-01 3 69915468 69915468 C T MITF Intron 0.26 TCGA-KQ-A41Q-01 3 9854767 9854767 G A TTLL3 Silent p.A206A 0.29 TCGA-KQ-A41Q-01 4 110745711 110745711 G A GAR1 3'UTR 0.37 TCGA-KQ-A41Q-01 4 146824297 146824297 C G ZNF827 Missense_Mutation p.E38D 0.25 tolerated(0.61) probably_damaging(0.99) TCGA-KQ-A41Q-01 4 152624955 152624955 G A PET112 Intron 0.39 TCGA-KQ-A41Q-01 4 155312359 155312359 A G DCHS2 Missense_Mutation p.Y31H 0.19 tolerated_low_confidence(1) benign(0.046) TCGA-KQ-A41Q-01 4 185045324 185045324 C T ENPP6 Missense_Mutation p.D175N 0.33 tolerated(0.56) possibly_damaging(0.524) TCGA-KQ-A41Q-01 4 2343228 2343228 C T ZFYVE28 Missense_Mutation p.G99S 0.29 deleterious(0.02) probably_damaging(1) TCGA-KQ-A41Q-01 4 3237303 3237303 G A HTT Silent p.V2861V 0.19 TCGA-KQ-A41Q-01 4 6064064 6064064 G A JAKMIP1 Missense_Mutation p.T512M 0.26 tolerated(0.06) probably_damaging(0.972) TCGA-KQ-A41Q-01 4 66230734 66230734 C T EPHA5 Splice_Site p.X746_splice 0.13 TCGA-KQ-A41Q-01 5 141336347 141336347 G A PCDH12 Missense_Mutation p.A357V 0.29 tolerated(0.06) benign(0.172) TCGA-KQ-A41Q-01 5 161580266 161580266 G C GABRG2 Silent p.G480G 0.31 TCGA-KQ-A41Q-01 5 172745097 172745097 G A STC2 Missense_Mutation p.A221V 0.28 tolerated(0.27) benign(0.002) TCGA-KQ-A41Q-01 5 176778190 176778190 G C LMAN2 Missense_Mutation p.S100C 0.34 deleterious(0.01) benign(0.342) TCGA-KQ-A41Q-01 5 178392140 178392140 A G ZNF454 Silent p.E245E 0.21 TCGA-KQ-A41Q-01 5 179137026 179137026 G C CANX Missense_Mutation p.K227N 0.17 deleterious(0.03) probably_damaging(0.984) TCGA-KQ-A41Q-01 5 179555574 179555574 G A RASGEF1C Silent p.L159L 0.39 TCGA-KQ-A41Q-01 5 55412454 55412454 G A ANKRD55 Missense_Mutation p.S318F 0.19 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41Q-01 5 75427843 75427843 G C SV2C Missense_Mutation p.E90Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41Q-01 5 80631635 80631635 C T ACOT12 Missense_Mutation p.R405H 0.16 tolerated(0.56) benign(0.002) TCGA-KQ-A41Q-01 6 106553409 106553409 C T PRDM1 Silent p.H458H 0.35 TCGA-KQ-A41Q-01 6 131571525 131571525 C A AKAP7 Intron 0.29 TCGA-KQ-A41Q-01 6 151757629 151757629 G A RMND1 Nonsense_Mutation p.Q189* 0.28 TCGA-KQ-A41Q-01 6 170632213 170632213 A G FAM120B Missense_Mutation p.N594S 0.51 tolerated(0.14) benign(0.044) TCGA-KQ-A41Q-01 6 17514185 17514185 A C CAP2 Silent p.T212T 0.07 TCGA-KQ-A41Q-01 6 26409783 26409783 G A BTN3A1 Silent p.Q246Q 0.34 TCGA-KQ-A41Q-01 6 31323154 31323154 G T HLA-B Missense_Mutation p.Q279K 0.15 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-KQ-A41Q-01 6 34985261 34985269 AGCAGCAGC - ANKS1A In_Frame_Del p.S480_S482del 0.29 TCGA-KQ-A41Q-01 6 36651987 36651988 - T CDKN1A Frame_Shift_Ins p.M38Nfs*10 0.38 TCGA-KQ-A41Q-01 6 62887176 62887176 C T KHDRBS2 Missense_Mutation p.E45K 0.27 deleterious(0.01) benign(0.007) TCGA-KQ-A41Q-01 6 64412521 64412521 G C PHF3 Missense_Mutation p.E1075Q 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-KQ-A41Q-01 6 90368362 90368362 C T MDN1 Silent p.E4996E 0.26 TCGA-KQ-A41Q-01 7 100002641 100002641 T C ZCWPW1 Missense_Mutation p.I416V 0.25 tolerated(0.17) benign(0.217) TCGA-KQ-A41Q-01 7 100175355 100175355 C G LRCH4 Missense_Mutation p.D350H 0.19 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41Q-01 7 102895249 102895249 G A DPY19L2P2 RNA 0.29 TCGA-KQ-A41Q-01 7 121738825 121738825 C G AASS Missense_Mutation p.R501T 0.30 deleterious(0.02) possibly_damaging(0.819) TCGA-KQ-A41Q-01 7 122635662 122635662 G C TAS2R16 Missense_Mutation p.F9L 0.30 tolerated(0.1) possibly_damaging(0.82) TCGA-KQ-A41Q-01 7 141643715 141643715 G A CLEC5A Silent p.T63T 0.18 TCGA-KQ-A41Q-01 7 149497502 149497502 C T SSPO RNA 0.40 TCGA-KQ-A41Q-01 7 1521019 1521019 G C INTS1 Missense_Mutation p.A1270G 0.18 tolerated(0.22) benign(0.001) TCGA-KQ-A41Q-01 7 25182284 25182284 G A C7orf31 Silent p.L278L 0.22 TCGA-KQ-A41Q-01 7 72419870 72419870 G C POM121 3'UTR 0.22 TCGA-KQ-A41Q-01 7 82784516 82784516 G C PCLO Missense_Mutation p.P481A 0.25 possibly_damaging(0.728) TCGA-KQ-A41Q-01 7 91623999 91623999 T C AKAP9 Missense_Mutation p.L214S 0.35 probably_damaging(0.999) TCGA-KQ-A41Q-01 8 11705206 11705206 T G CTSB Missense_Mutation p.K220Q 0.27 tolerated(0.22) benign(0.003) TCGA-KQ-A41Q-01 8 121309768 121309768 G C COL14A1 Missense_Mutation p.D1419H 0.21 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41Q-01 8 12879451 12879451 C T KIAA1456 Silent p.C421C 0.40 TCGA-KQ-A41Q-01 8 144992844 144992844 C T PLEC Silent p.L3852L 0.07 TCGA-KQ-A41Q-01 8 1846619 1846619 C T ARHGEF10 Silent p.P526P 0.19 TCGA-KQ-A41Q-01 8 23003287 23003287 A G TNFRSF10D Silent p.Y210Y 0.42 TCGA-KQ-A41Q-01 8 53569704 53569704 C T RB1CC1 Silent p.L895L 0.23 TCGA-KQ-A41Q-01 8 55540458 55540458 G T RP1 Missense_Mutation p.C1339F 0.23 deleterious(0) possibly_damaging(0.481) TCGA-KQ-A41Q-01 8 86250639 86250639 C G CA1 Missense_Mutation p.G26A 0.22 deleterious(0) probably_damaging(1) TCGA-KQ-A41Q-01 9 100459591 100459591 G A XPA 5'UTR 0.34 TCGA-KQ-A41Q-01 9 135202958 135202958 G A SETX Silent p.L1343L 0.23 TCGA-KQ-A41Q-01 9 136633664 136633664 C T VAV2 Missense_Mutation p.R830Q 0.41 deleterious(0) probably_damaging(0.962) TCGA-KQ-A41Q-01 9 139409805 139409805 C T NOTCH1 Missense_Mutation p.D651N 0.34 tolerated(0.19) possibly_damaging(0.853) TCGA-KQ-A41Q-01 9 36209262 36209262 A G CLTA Splice_Site p.X162_splice 0.21 TCGA-KQ-A41Q-01 X 102192352 102192352 G A RAB40AL Missense_Mutation p.D36N 0.39 tolerated(0.07) benign(0.02) TCGA-KQ-A41Q-01 X 72434236 72434237 - A NAP1L2 Frame_Shift_Ins p.E32Gfs*4 0.17 TCGA-KQ-A41R-01 10 100185673 100185673 G A HPS1 Silent p.L353L 0.39 TCGA-KQ-A41R-01 10 101180478 101180478 T G GOT1 Missense_Mutation p.N68T 0.19 deleterious(0) probably_damaging(0.974) TCGA-KQ-A41R-01 10 101190328 101190328 G A GOT1 5'UTR 0.44 TCGA-KQ-A41R-01 10 101514316 101514316 G C CUTC Missense_Mutation p.R211T 0.07 deleterious(0.01) benign(0.205) TCGA-KQ-A41R-01 10 102046409 102046409 G A BLOC1S2 Missense_Mutation p.A3V 0.33 tolerated_low_confidence(0.46) benign(0.008) TCGA-KQ-A41R-01 10 103990819 103990819 C T PITX3 Missense_Mutation p.E121K 0.31 deleterious(0) possibly_damaging(0.651) TCGA-KQ-A41R-01 10 105203081 105203081 G A PDCD11 Silent p.E1705E 0.26 TCGA-KQ-A41R-01 10 114046120 114046120 G A TECTB Missense_Mutation p.E152K 0.43 tolerated(1) benign(0.388) TCGA-KQ-A41R-01 10 114919691 114919691 C G TCF7L2 Intron 0.32 TCGA-KQ-A41R-01 10 115372144 115372144 A T NRAP Missense_Mutation p.L1116Q 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41R-01 10 118957189 118957189 G T KCNK18 Nonsense_Mutation p.E64* 0.42 TCGA-KQ-A41R-01 10 119799716 119799716 A G RAB11FIP2 Silent p.S238S 0.39 TCGA-KQ-A41R-01 10 123846705 123846705 G A TACC2 Missense_Mutation p.A1564T 0.15 benign(0.03) TCGA-KQ-A41R-01 10 124335920 124335920 G T DMBT1 Missense_Mutation p.D97Y 0.16 tolerated(0.07) possibly_damaging(0.862) TCGA-KQ-A41R-01 10 124389365 124389365 C T DMBT1 Missense_Mutation p.S1764L 0.14 tolerated(0.67) benign(0.048) TCGA-KQ-A41R-01 10 135020769 135020769 C T KNDC1 Silent p.N1236N 0.17 TCGA-KQ-A41R-01 10 135116312 135116312 G C TUBGCP2 Missense_Mutation p.S45C 0.47 deleterious(0) probably_damaging(0.978) TCGA-KQ-A41R-01 10 13701464 13701464 C T FRMD4A Missense_Mutation p.G642E 0.47 tolerated(0.08) possibly_damaging(0.726) TCGA-KQ-A41R-01 10 13789796 13789796 A - FRMD4A Frame_Shift_Del p.L163* 0.27 TCGA-KQ-A41R-01 10 17087018 17087018 T - CUBN Frame_Shift_Del p.D1221Ifs*16 0.25 TCGA-KQ-A41R-01 10 25885645 25885645 G T GPR158 Missense_Mutation p.R691L 0.36 deleterious(0) probably_damaging(0.983) TCGA-KQ-A41R-01 10 27405200 27405200 C G YME1L1 Missense_Mutation p.M655I 0.34 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 10 27486333 27486333 T A ACBD5 3'UTR 0.41 TCGA-KQ-A41R-01 10 27512269 27512269 G C ACBD5 Nonsense_Mutation p.S163* 0.39 TCGA-KQ-A41R-01 10 30315765 30315765 C T KIAA1462 Silent p.R1104R 0.20 TCGA-KQ-A41R-01 10 30316774 30316774 G A KIAA1462 Missense_Mutation p.S768F 0.32 deleterious(0) probably_damaging(0.942) TCGA-KQ-A41R-01 10 43088862 43088862 G A ZNF33B Silent p.L512L 0.40 TCGA-KQ-A41R-01 10 51768847 51768847 A T AGAP6 Missense_Mutation p.D321V 0.40 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 10 53459346 53459346 C T CSTF2T 5'UTR 0.47 TCGA-KQ-A41R-01 10 61122221 61122221 C T FAM13C 5'UTR 0.50 TCGA-KQ-A41R-01 10 64148268 64148268 A - ZNF365 Frame_Shift_Del p.E286Gfs*23 0.10 TCGA-KQ-A41R-01 10 6472882 6472882 C G PRKCQ Missense_Mutation p.E619Q 0.21 tolerated(0.44) benign(0.103) TCGA-KQ-A41R-01 10 75896498 75896498 A C AP3M1 Missense_Mutation p.L113V 0.33 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41R-01 10 76788464 76788464 G C KAT6B Missense_Mutation p.E1294D 0.61 benign(0.338) TCGA-KQ-A41R-01 10 79777364 79777364 G A POLR3A Missense_Mutation p.S467L 0.41 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41R-01 10 88768840 88768840 T A RP11-96C23.10 3'Flank 0.34 TCGA-KQ-A41R-01 10 89711913 89711913 T G PTEN Nonsense_Mutation p.Y177* 0.51 TCGA-KQ-A41R-01 10 91465168 91465168 T G KIF20B Missense_Mutation p.H39Q 0.06 tolerated(0.6) benign(0.165) TCGA-KQ-A41R-01 10 94274785 94274785 G A IDE Silent p.L226L 0.32 TCGA-KQ-A41R-01 10 94714391 94714391 A G EXOC6 Missense_Mutation p.T511A 0.16 deleterious(0.05) possibly_damaging(0.728) TCGA-KQ-A41R-01 10 95720859 95720859 C T PIPSL RNA 0.47 TCGA-KQ-A41R-01 10 96443485 96443485 C T CYP2C18 5'UTR 0.62 TCGA-KQ-A41R-01 10 98380259 98380259 A G PIK3AP1 Silent p.F597F 0.44 TCGA-KQ-A41R-01 10 99148282 99148282 C T RRP12 Missense_Mutation p.A285T 0.08 deleterious(0) benign(0.439) TCGA-KQ-A41R-01 11 1017361 1017361 G C MUC6 Missense_Mutation p.P1814A 0.05 possibly_damaging(0.857) TCGA-KQ-A41R-01 11 102563678 102563678 G A MMP27 Nonsense_Mutation p.Q430* 0.55 TCGA-KQ-A41R-01 11 103870900 103870900 G T PDGFD Missense_Mutation p.P70T 0.23 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 11 107224318 107224318 C T CWF19L2 Missense_Mutation p.E673K 0.29 deleterious(0.05) benign(0.411) TCGA-KQ-A41R-01 11 108564284 108564284 G A DDX10 Missense_Mutation p.E394K 0.25 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 11 111957681 111957681 G C SDHD Missense_Mutation p.R17P 0.29 deleterious(0.05) benign(0.002) TCGA-KQ-A41R-01 11 111958608 111958608 G C SDHD Missense_Mutation p.R27T 0.21 tolerated(0.1) possibly_damaging(0.69) TCGA-KQ-A41R-01 11 116691987 116691987 G A APOA4 Silent p.L263L 0.53 TCGA-KQ-A41R-01 11 117090349 117090349 C T PCSK7 Silent p.T427T 0.37 TCGA-KQ-A41R-01 11 118213299 118213299 A G CD3D Silent p.S8S 0.38 TCGA-KQ-A41R-01 11 119170312 119170312 G A CBL Missense_Mutation p.A848T 0.05 tolerated_low_confidence(0.19) benign(0.012) TCGA-KQ-A41R-01 11 120175769 120175769 T G POU2F3 Missense_Mutation p.S161A 0.35 tolerated(0.06) benign(0.223) TCGA-KQ-A41R-01 11 120175775 120175775 G A POU2F3 Missense_Mutation p.E163K 0.37 tolerated(0.06) benign(0.304) TCGA-KQ-A41R-01 11 120197959 120197959 G A TMEM136 5'UTR 0.44 TCGA-KQ-A41R-01 11 122928457 122928457 A G HSPA8 Silent p.I642I 0.33 TCGA-KQ-A41R-01 11 12315181 12315181 G A MICALCL Missense_Mutation p.R68Q 0.29 tolerated(0.14) benign(0.116) TCGA-KQ-A41R-01 11 126137932 126137932 T C SRPR Missense_Mutation p.Y56C 0.06 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 11 128844335 128844335 C G ARHGAP32 Missense_Mutation p.M905I 0.06 tolerated(0.1) benign(0.002) TCGA-KQ-A41R-01 11 129784913 129784913 T C PRDM10 Missense_Mutation p.T847A 0.42 tolerated(0.55) probably_damaging(0.987) TCGA-KQ-A41R-01 11 134212789 134212789 G T GLB1L2 Missense_Mutation p.E76D 0.04 tolerated(0.08) benign(0.033) TCGA-KQ-A41R-01 11 14317419 14317419 A C RRAS2 Intron 0.56 TCGA-KQ-A41R-01 11 16760166 16760166 G A C11orf58 5'UTR 0.33 TCGA-KQ-A41R-01 11 16760168 16760168 G A C11orf58 5'UTR 0.30 TCGA-KQ-A41R-01 11 16847941 16847941 C T PLEKHA7 Missense_Mutation p.D357N 0.22 tolerated(0.44) benign(0.091) TCGA-KQ-A41R-01 11 17809933 17809933 T C SERGEF Missense_Mutation p.N359S 0.18 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 11 18737196 18737196 C A IGSF22 Silent p.L438L 0.16 TCGA-KQ-A41R-01 11 18759456 18759456 C T PTPN5 Missense_Mutation p.R324Q 0.58 tolerated(0.12) probably_damaging(0.998) TCGA-KQ-A41R-01 11 30032329 30032329 C T KCNA4 Missense_Mutation p.G633R 0.10 deleterious_low_confidence(0.02) probably_damaging(0.933) TCGA-KQ-A41R-01 11 33620407 33620407 C T KIAA1549L Missense_Mutation p.S1301L 0.49 deleterious(0) possibly_damaging(0.553) TCGA-KQ-A41R-01 11 34905020 34905020 C T APIP Missense_Mutation p.E165K 0.58 deleterious(0.01) probably_damaging(0.99) TCGA-KQ-A41R-01 11 3660921 3660921 G A ART5 Silent p.L246L 0.51 TCGA-KQ-A41R-01 11 45832489 45832489 A G SLC35C1 Missense_Mutation p.Y233C 0.30 deleterious(0.03) probably_damaging(0.982) TCGA-KQ-A41R-01 11 47745704 47745704 G A FNBP4 Silent p.I780I 0.34 TCGA-KQ-A41R-01 11 532642 532642 G A HRAS Silent p.L188L 0.57 TCGA-KQ-A41R-01 11 55563608 55563608 G C OR5D14 Missense_Mutation p.D193H 0.57 deleterious(0) probably_damaging(0.983) TCGA-KQ-A41R-01 11 559118 559118 G A C11orf35 Intron 0.89 TCGA-KQ-A41R-01 11 56143777 56143777 G C OR8U1 Silent p.L226L 0.17 TCGA-KQ-A41R-01 11 57982413 57982413 C T OR1S1 Missense_Mutation p.T66M 0.49 deleterious(0.01) benign(0.017) TCGA-KQ-A41R-01 11 59554581 59554581 C T STX3 Silent p.I62I 0.40 TCGA-KQ-A41R-01 11 59575238 59575238 A G MRPL16 Missense_Mutation p.L69S 0.57 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 11 61102186 61102186 C G DAK 5'UTR 0.15 TCGA-KQ-A41R-01 11 61666829 61666829 G A RAB3IL1 Silent p.F341F 0.24 TCGA-KQ-A41R-01 11 63585731 63585731 C T C11orf84 Silent p.D167D 0.25 TCGA-KQ-A41R-01 11 64023902 64023902 C T PLCB3 Silent p.N251N 0.52 TCGA-KQ-A41R-01 11 64084408 64084427 CGGGCACTGCAGGGTGCCCT - TRMT112 Frame_Shift_Del p.E95Gfs*19 0.38 TCGA-KQ-A41R-01 11 64089110 64089110 G A PRDX5 Missense_Mutation p.D198N 0.39 deleterious(0.02) probably_damaging(1) TCGA-KQ-A41R-01 11 64603002 64603002 C T CDC42BPG Missense_Mutation p.R617Q 0.61 tolerated(0.25) benign(0.007) TCGA-KQ-A41R-01 11 65048486 65048486 G A POLA2 Silent p.Q256Q 0.68 TCGA-KQ-A41R-01 11 65299109 65299109 G A SCYL1 Missense_Mutation p.M357I 0.30 deleterious(0.01) benign(0.003) TCGA-KQ-A41R-01 11 65360718 65360718 C T KCNK7 Intron 0.56 TCGA-KQ-A41R-01 11 65397010 65397010 C T PCNXL3 Silent p.L1340L 0.18 TCGA-KQ-A41R-01 11 65487536 65487536 A C RNASEH2C Missense_Mutation p.W150G 0.53 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 11 66189988 66189988 C T NPAS4 Missense_Mutation p.R132C 0.23 deleterious(0) benign(0.4) TCGA-KQ-A41R-01 11 67202103 67202103 C T RPS6KB2 Silent p.F402F 0.44 TCGA-KQ-A41R-01 11 6953674 6953674 G A ZNF215 Silent p.L57L 0.54 TCGA-KQ-A41R-01 11 69950120 69950120 G A ANO1 Missense_Mutation p.E186K 0.25 tolerated(0.23) benign(0.314) TCGA-KQ-A41R-01 11 71276940 71276940 G A KRTAP5-10 Missense_Mutation p.G103S 0.32 unknown(0) TCGA-KQ-A41R-01 11 71850700 71850700 T G FOLR3 Missense_Mutation p.L230R 0.08 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 11 73789718 73789718 G A C2CD3 Silent p.L1349L 0.31 TCGA-KQ-A41R-01 11 77602450 77602450 C T INTS4 Missense_Mutation p.R836Q 0.48 deleterious(0.01) possibly_damaging(0.899) TCGA-KQ-A41R-01 11 78279686 78279686 C T NARS2 Missense_Mutation p.D122N 0.36 tolerated(0.17) benign(0.03) TCGA-KQ-A41R-01 11 78285429 78285429 C T NARS2 Silent p.G35G 0.21 TCGA-KQ-A41R-01 11 8017654 8017654 G A EIF3F 3'UTR 0.26 TCGA-KQ-A41R-01 11 82989821 82989821 G A CCDC90B Missense_Mutation p.S91L 0.53 tolerated(0.24) possibly_damaging(0.904) TCGA-KQ-A41R-01 11 86749084 86749084 C T TMEM135 5'UTR 0.24 TCGA-KQ-A41R-01 11 89880531 89880531 A G NAALAD2 Silent p.T76T 0.29 TCGA-KQ-A41R-01 11 94801072 94801072 C T SRSF8 Silent p.L228L 0.32 TCGA-KQ-A41R-01 11 9853789 9853789 G A SBF2 Nonsense_Mutation p.Q1212* 0.26 TCGA-KQ-A41R-01 12 101699774 101699774 A T UTP20 Silent p.P621P 0.09 TCGA-KQ-A41R-01 12 101773151 101773151 C T UTP20 Missense_Mutation p.H2467Y 0.15 tolerated(0.11) benign(0.005) TCGA-KQ-A41R-01 12 102023314 102023314 T C MYBPC1 Missense_Mutation p.V69A 0.28 tolerated(0.08) benign(0.435) TCGA-KQ-A41R-01 12 105456749 105456749 C T ALDH1L2 Missense_Mutation p.E280K 0.58 tolerated_low_confidence(0.21) benign(0.155) TCGA-KQ-A41R-01 12 109017169 109017169 G A SELPLG Silent p.V321V 0.53 TCGA-KQ-A41R-01 12 110429507 110429507 G A GIT2 Silent p.V37V 0.48 TCGA-KQ-A41R-01 12 11061381 11061381 C T TAS2R13 Missense_Mutation p.E173K 0.37 tolerated(0.28) benign(0.011) TCGA-KQ-A41R-01 12 11091006 11091006 C T TAS2R14 Silent p.V267V 0.46 TCGA-KQ-A41R-01 12 111758031 111758031 G A CUX2 Missense_Mutation p.G740R 0.56 tolerated(0.35) possibly_damaging(0.467) TCGA-KQ-A41R-01 12 11286372 11286372 A G TAS2R30 Missense_Mutation p.Y158H 0.21 tolerated(0.2) benign(0.085) TCGA-KQ-A41R-01 12 113737618 113737618 G A SLC8B1 Silent p.L573L 0.43 TCGA-KQ-A41R-01 12 117681187 117681187 G C NOS1 Missense_Mutation p.N993K 0.52 tolerated(0.72) benign(0.417) TCGA-KQ-A41R-01 12 118469089 118469089 C T RFC5 3'UTR 0.61 TCGA-KQ-A41R-01 12 118473075 118473075 C T WSB2 Silent p.L296L 0.54 TCGA-KQ-A41R-01 12 120569004 120569004 A G GCN1L1 Silent p.S2516S 0.45 TCGA-KQ-A41R-01 12 122667776 122667776 G A LRRC43 Missense_Mutation p.A29T 0.38 tolerated(0.15) benign(0.043) TCGA-KQ-A41R-01 12 123200184 123200184 C A HCAR3 Missense_Mutation p.K367N 0.19 tolerated_low_confidence(0.09) benign(0.011) TCGA-KQ-A41R-01 12 123380553 123380553 G C VPS37B Missense_Mutation p.N19K 0.49 tolerated(0.3) benign(0.107) TCGA-KQ-A41R-01 12 124311325 124311325 G A DNAH10 Missense_Mutation p.R1306K 0.37 benign(0.047) TCGA-KQ-A41R-01 12 129293995 129293995 C T SLC15A4 Silent p.Q345Q 0.03 TCGA-KQ-A41R-01 12 132195791 132195791 G A SFSWAP Missense_Mutation p.G6E 0.28 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-KQ-A41R-01 12 19593273 19593273 G A AEBP2 Missense_Mutation p.E214K 0.40 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-KQ-A41R-01 12 2058390 2058390 G A DCP1B Silent p.L545L 0.24 TCGA-KQ-A41R-01 12 21716223 21716223 G C GYS2 Missense_Mutation p.Q294E 0.38 deleterious(0.02) possibly_damaging(0.654) TCGA-KQ-A41R-01 12 25254248 25254248 T C LRMP Missense_Mutation p.L293P 0.50 deleterious(0.02) probably_damaging(1) TCGA-KQ-A41R-01 12 30906343 30906343 C T CAPRIN2 Missense_Mutation p.E119K 0.42 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 12 31579258 31579258 A G DENND5B Missense_Mutation p.V736A 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-KQ-A41R-01 12 394776 394777 - A KDM5A Frame_Shift_Ins p.C1640Lfs*10 0.32 TCGA-KQ-A41R-01 12 40499176 40499176 G A SLC2A13 Silent p.F145F 0.21 TCGA-KQ-A41R-01 12 42787474 42787474 G A PPHLN1 Missense_Mutation p.E251K 0.30 tolerated(0.11) benign(0.256) TCGA-KQ-A41R-01 12 459801 459801 G C KDM5A Missense_Mutation p.L432V 0.49 tolerated(0.51) benign(0.003) TCGA-KQ-A41R-01 12 47472633 47472633 G A AMIGO2 Silent p.I51I 0.36 TCGA-KQ-A41R-01 12 49425124 49425124 C T KMT2D Missense_Mutation p.R4455H 0.25 unknown(0) TCGA-KQ-A41R-01 12 49719324 49719324 C T TROAP Silent p.A126A 0.47 TCGA-KQ-A41R-01 12 51399091 51399091 C T SLC11A2 Intron 0.62 TCGA-KQ-A41R-01 12 52754603 52754603 G A KRT85 3'UTR 0.44 TCGA-KQ-A41R-01 12 52825362 52825362 C G KRT75 Missense_Mutation p.E279Q 0.16 tolerated(0.1) benign(0.069) TCGA-KQ-A41R-01 12 52882180 52882180 C T KRT6A Missense_Mutation p.M452I 0.34 deleterious(0.02) benign(0.145) TCGA-KQ-A41R-01 12 53164874 53164874 G A KRT76 Silent p.L465L 0.35 TCGA-KQ-A41R-01 12 53471015 53471015 G A SPRYD3 Silent p.L18L 0.12 TCGA-KQ-A41R-01 12 56213257 56213257 C T ORMDL2 Silent p.L102L 0.42 TCGA-KQ-A41R-01 12 56498486 56498486 C A PA2G4 5'UTR 0.51 TCGA-KQ-A41R-01 12 56504454 56504454 G A PA2G4 Missense_Mutation p.D274N 0.39 tolerated(0.28) benign(0.002) TCGA-KQ-A41R-01 12 56822756 56822756 G C TIMELESS Silent p.V405V 0.32 TCGA-KQ-A41R-01 12 57588286 57588286 G A LRP1 Missense_Mutation p.G2690S 0.22 benign(0.084) TCGA-KQ-A41R-01 12 58121591 58121591 C T AGAP2-AS1 3'UTR 0.57 TCGA-KQ-A41R-01 12 58158585 58158585 C T CYP27B1 Silent p.Q305Q 0.30 TCGA-KQ-A41R-01 12 58217463 58217463 C T CTDSP2 Silent p.L246L 0.31 TCGA-KQ-A41R-01 12 62929393 62929393 G C MON2 Missense_Mutation p.D602H 0.14 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 12 62986435 62986435 C T MON2 Missense_Mutation p.S1687F 0.36 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41R-01 12 67700277 67700277 A C CAND1 Silent p.A943A 0.07 TCGA-KQ-A41R-01 12 6887433 6887433 C T LAG3 Silent p.A485A 0.36 TCGA-KQ-A41R-01 12 7044914 7044914 C G ATN1 Missense_Mutation p.P162A 0.47 probably_damaging(0.995) TCGA-KQ-A41R-01 12 7091840 7091840 C A LPCAT3 Missense_Mutation p.Q121H 0.19 tolerated(0.11) possibly_damaging(0.841) TCGA-KQ-A41R-01 12 72068072 72068072 C G THAP2 Nonsense_Mutation p.S54* 0.04 TCGA-KQ-A41R-01 12 80752117 80752117 C T OTOGL Nonsense_Mutation p.Q2028* 0.45 TCGA-KQ-A41R-01 12 85439813 85439813 G C LRRIQ1 Missense_Mutation p.E118Q 0.26 deleterious(0.04) probably_damaging(0.969) TCGA-KQ-A41R-01 12 89743307 89743307 C G DUSP6 Missense_Mutation p.L290F 0.28 deleterious(0) probably_damaging(0.976) TCGA-KQ-A41R-01 12 89997548 89997578 TTCATCATTGTACGTGAGATGAGAGGCTTAT - ATP2B1 Frame_Shift_Del p.N920Rfs*12 0.36 TCGA-KQ-A41R-01 12 95603478 95603478 C A FGD6 Nonsense_Mutation p.E528* 0.20 TCGA-KQ-A41R-01 12 96131798 96131798 T C NTN4 Missense_Mutation p.Q237R 0.19 tolerated(0.36) benign(0.014) TCGA-KQ-A41R-01 13 114765077 114765077 G T RASA3 Missense_Mutation p.S639Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 13 21751456 21751456 G A MRP63 3'UTR 0.57 TCGA-KQ-A41R-01 13 25016780 25016780 T A PARP4 Missense_Mutation p.K1164I 0.19 deleterious(0.04) benign(0.325) TCGA-KQ-A41R-01 13 31221068 31221068 G A USPL1 Splice_Site p.X371_splice 0.49 TCGA-KQ-A41R-01 13 36888365 36888365 C G SPG20 Silent p.L494L 0.39 TCGA-KQ-A41R-01 13 46065050 46065050 A G COG3 Missense_Mutation p.T309A 0.46 tolerated(0.83) benign(0.001) TCGA-KQ-A41R-01 13 47011989 47011989 C G PPP1R2P4 RNA 0.38 TCGA-KQ-A41R-01 13 48835455 48835455 C A ITM2B 3'UTR 0.33 TCGA-KQ-A41R-01 13 77566269 77566269 G A CLN5 Silent p.E61E 0.47 TCGA-KQ-A41R-01 13 77670490 77670490 C T MYCBP2 Missense_Mutation p.R3266K 0.39 possibly_damaging(0.908) TCGA-KQ-A41R-01 13 77837783 77837783 T G MYCBP2 Intron 0.36 TCGA-KQ-A41R-01 14 100743870 100743870 A G YY1 Missense_Mutation p.K393R 0.48 tolerated(0.26) benign(0.164) TCGA-KQ-A41R-01 14 101521056 101521056 G A MIR134 RNA 0.23 TCGA-KQ-A41R-01 14 102466434 102466434 G T DYNC1H1 Nonsense_Mutation p.E1305* 0.33 TCGA-KQ-A41R-01 14 102499629 102499629 G A DYNC1H1 Silent p.K3407K 0.46 TCGA-KQ-A41R-01 14 102606463 102606463 A G WDR20 Missense_Mutation p.N68S 0.60 deleterious(0.01) benign(0.164) TCGA-KQ-A41R-01 14 103167667 103167667 G T RCOR1 Missense_Mutation p.Q166H 0.42 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 14 103804671 103804671 T G EIF5 Missense_Mutation p.S149R 0.30 tolerated(0.31) benign(0.033) TCGA-KQ-A41R-01 14 105419271 105419271 C G AHNAK2 Missense_Mutation p.K839N 0.31 probably_damaging(0.998) TCGA-KQ-A41R-01 14 106110398 106110414 GGCTTACCTGGGCACGG - IGHG2 Splice_Site p.X108_splice 0.22 TCGA-KQ-A41R-01 14 20757773 20757773 T C TTC5 3'UTR 0.24 TCGA-KQ-A41R-01 14 21109025 21109025 C T OR6S1 Missense_Mutation p.A276T 0.26 tolerated(0.16) benign(0.441) TCGA-KQ-A41R-01 14 21542443 21542443 G A ARHGEF40 Missense_Mutation p.R185Q 0.61 tolerated(0.5) probably_damaging(0.945) TCGA-KQ-A41R-01 14 22521085 22521085 G A TRAV21 Missense_Mutation p.E36K 0.53 tolerated(0.19) benign(0.172) TCGA-KQ-A41R-01 14 24041062 24041062 G A JPH4 Nonsense_Mutation p.R407* 0.50 TCGA-KQ-A41R-01 14 24523302 24523302 G A LRRC16B Silent p.L47L 0.76 TCGA-KQ-A41R-01 14 24602013 24602013 C T FITM1 Missense_Mutation p.S287F 0.11 deleterious(0.02) benign(0.008) TCGA-KQ-A41R-01 14 31856452 31856452 C T HEATR5A Missense_Mutation p.V62I 0.56 tolerated(0.15) benign(0.01) TCGA-KQ-A41R-01 14 35782140 35782140 G A PSMA6 Missense_Mutation p.D155N 0.30 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 14 39717306 39717306 A G MIA2 Missense_Mutation p.T510A 0.23 tolerated(0.32) benign(0.107) TCGA-KQ-A41R-01 14 50092275 50092275 T A DNAAF2 Silent p.L833L 0.23 TCGA-KQ-A41R-01 14 51192712 51192712 T G NIN Missense_Mutation p.K2051Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 14 52782081 52782081 C T PTGER2 Missense_Mutation p.T272I 0.52 tolerated(0.55) benign(0.401) TCGA-KQ-A41R-01 14 55467708 55467708 G T WDHD1 Silent p.T232T 0.13 TCGA-KQ-A41R-01 14 61262967 61262967 G A MNAT1 Missense_Mutation p.R41K 0.51 tolerated(0.91) probably_damaging(0.951) TCGA-KQ-A41R-01 14 61519175 61519175 A G SLC38A6 Intron 0.13 TCGA-KQ-A41R-01 14 62229167 62229168 - CTTCGGAGGCGTGCGGC SNAPC1 5'UTR 0.16 TCGA-KQ-A41R-01 14 62550988 62550988 T C SYT16 Silent p.H503H 0.18 TCGA-KQ-A41R-01 14 63416953 63416953 G C KCNH5 Missense_Mutation p.L423V 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-KQ-A41R-01 14 68117685 68117685 G A VTI1B 3'UTR 0.62 TCGA-KQ-A41R-01 14 72205846 72205846 G A SIPA1L1 Missense_Mutation p.E1795K 0.27 deleterious(0) probably_damaging(0.952) TCGA-KQ-A41R-01 14 74179499 74179499 C T PNMA1 Missense_Mutation p.D282N 0.46 tolerated(0.36) benign(0.264) TCGA-KQ-A41R-01 14 75230421 75230421 C T YLPM1 Nonsense_Mutation p.Q77* 0.27 TCGA-KQ-A41R-01 14 77723157 77723157 C T TMEM63C 3'UTR 0.42 TCGA-KQ-A41R-01 14 79746514 79746514 C T NRXN3 Intron 0.29 TCGA-KQ-A41R-01 14 90651233 90651233 C T KCNK13 Silent p.A371A 0.22 TCGA-KQ-A41R-01 14 92625453 92625453 G A CPSF2 Missense_Mutation p.E650K 0.28 tolerated(0.47) benign(0.089) TCGA-KQ-A41R-01 14 99880245 99880245 G A SETD3 Silent p.P234P 0.46 TCGA-KQ-A41R-01 15 101567897 101567897 C T LRRK1 Missense_Mutation p.R861C 0.44 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 15 22848929 22848929 C T TUBGCP5 Nonsense_Mutation p.R326* 0.51 TCGA-KQ-A41R-01 15 22866950 22866950 C T TUBGCP5 Nonsense_Mutation p.Q823* 0.59 TCGA-KQ-A41R-01 15 34635278 34635278 C T NOP10 5'UTR 0.59 TCGA-KQ-A41R-01 15 34673718 34673718 A G GOLGA8A Missense_Mutation p.V569A 0.24 tolerated(0.18) benign(0.017) TCGA-KQ-A41R-01 15 40094418 40094418 A G GPR176 Missense_Mutation p.S155P 0.47 deleterious(0) probably_damaging(0.984) TCGA-KQ-A41R-01 15 40594735 40594735 A G PLCB2 Missense_Mutation p.S103P 0.48 tolerated(0.16) probably_damaging(0.969) TCGA-KQ-A41R-01 15 40861601 40861602 - TAGCTT RPUSD2 In_Frame_Ins p.S23_F24dup 0.34 TCGA-KQ-A41R-01 15 41799416 41799416 C T LTK Missense_Mutation p.R473Q 0.16 tolerated_low_confidence(0.38) benign(0.006) TCGA-KQ-A41R-01 15 42170587 42170587 C T SPTBN5 Silent p.L1141L 0.30 TCGA-KQ-A41R-01 15 42613982 42613982 G A GANC Splice_Site p.X353_splice 0.53 TCGA-KQ-A41R-01 15 43367196 43367196 C G UBR1 Missense_Mutation p.R170T 0.28 tolerated(0.67) benign(0) TCGA-KQ-A41R-01 15 43888665 43888665 T C CKMT1B Missense_Mutation p.I271T 0.20 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 15 45406820 45406820 G A DUOXA2 Missense_Mutation p.G6D 0.63 tolerated(0.16) benign(0.053) TCGA-KQ-A41R-01 15 49148228 49148228 A C SHC4 Silent p.V388V 0.69 TCGA-KQ-A41R-01 15 51755626 51755626 G A DMXL2 Nonsense_Mutation p.Q2626* 0.25 TCGA-KQ-A41R-01 15 52074917 52074917 G A TMOD2 Splice_Site p.X209_splice 0.51 TCGA-KQ-A41R-01 15 59064257 59064257 G C FAM63B Missense_Mutation p.E221D 0.27 tolerated(0.1) benign(0.038) TCGA-KQ-A41R-01 15 59377984 59377984 G C RNF111 Missense_Mutation p.M859I 0.35 tolerated(0.06) benign(0.344) TCGA-KQ-A41R-01 15 59430525 59430527 CCC - MYO1E In_Frame_Del p.G1041del 0.22 TCGA-KQ-A41R-01 15 62359805 62359805 G C C2CD4A 5'UTR 0.16 TCGA-KQ-A41R-01 15 65114472 65114472 G A PIF1 Silent p.A270A 0.10 TCGA-KQ-A41R-01 15 65497694 65497694 C G CILP Missense_Mutation p.A179P 0.11 tolerated(0.17) possibly_damaging(0.685) TCGA-KQ-A41R-01 15 65677303 65677303 C T IGDCC4 Missense_Mutation p.D1111N 0.48 tolerated(0.08) benign(0.015) TCGA-KQ-A41R-01 15 67663862 67663862 A G IQCH Intron 0.28 TCGA-KQ-A41R-01 15 74426949 74426949 T C ISLR2 Silent p.A618A 0.62 TCGA-KQ-A41R-01 15 77471913 77471913 A C PEAK1 Missense_Mutation p.S786A 0.23 tolerated(0.81) benign(0.005) TCGA-KQ-A41R-01 15 79755491 79755491 G A KIAA1024 Missense_Mutation p.S794N 0.55 tolerated(0.22) probably_damaging(0.986) TCGA-KQ-A41R-01 15 81585360 81585360 C T IL16 Silent p.T628T 0.65 TCGA-KQ-A41R-01 15 84506897 84506897 C T ADAMTSL3 Silent p.V219V 0.44 TCGA-KQ-A41R-01 15 85400766 85400766 G A ALPK3 Missense_Mutation p.E1135K 0.37 tolerated_low_confidence(0.07) benign(0.035) TCGA-KQ-A41R-01 15 93588422 93588422 C T RGMA Missense_Mutation p.D395N 0.19 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 15 96880840 96880840 G A NR2F2 Missense_Mutation p.A412T 0.25 tolerated(0.1) benign(0.002) TCGA-KQ-A41R-01 16 11063030 11063030 C T CLEC16A Missense_Mutation p.S119L 0.22 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 16 1391441 1391441 G A BAIAP3 Missense_Mutation p.E263K 0.28 tolerated(0.1) probably_damaging(0.998) TCGA-KQ-A41R-01 16 1397610 1397610 T C BAIAP3 Missense_Mutation p.L998P 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-KQ-A41R-01 16 14704549 14704549 C T PARN Missense_Mutation p.C169Y 0.22 tolerated(1) benign(0.01) TCGA-KQ-A41R-01 16 1556998 1556998 C T TELO2 Silent p.L724L 0.73 TCGA-KQ-A41R-01 16 16345941 16345941 G A NOMO3 Missense_Mutation p.S286N 0.48 tolerated(0.07) possibly_damaging(0.478) TCGA-KQ-A41R-01 16 19592888 19592888 C T C16orf62 Silent p.Y273Y 0.13 TCGA-KQ-A41R-01 16 2014322 2014322 C T RPS2 Silent p.K74K 0.30 TCGA-KQ-A41R-01 16 21213342 21213342 G T ZP2 Missense_Mutation p.F430L 0.08 tolerated(0.12) benign(0.22) TCGA-KQ-A41R-01 16 2279581 2279581 C T E4F1 Missense_Mutation p.A107V 0.25 tolerated(0.25) benign(0.002) TCGA-KQ-A41R-01 16 23091365 23091365 C T USP31 Missense_Mutation p.R693K 0.47 tolerated(0.42) probably_damaging(0.997) TCGA-KQ-A41R-01 16 23641161 23641161 C T PALB2 Missense_Mutation p.D772N 0.31 tolerated(0.25) benign(0.027) TCGA-KQ-A41R-01 16 23646595 23646595 G C PALB2 Silent p.A424A 0.31 TCGA-KQ-A41R-01 16 24567000 24567000 C G RBBP6 Missense_Mutation p.S138C 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KQ-A41R-01 16 2814970 2814970 G A SRRM2 Missense_Mutation p.D1481N 0.30 unknown(0) TCGA-KQ-A41R-01 16 2835820 2835820 T A PRSS33 Silent p.T74T 0.43 TCGA-KQ-A41R-01 16 28854218 28854218 G A TUFM 3'UTR 0.46 TCGA-KQ-A41R-01 16 29376189 29376189 C T SNX29P2 RNA 0.25 TCGA-KQ-A41R-01 16 29676226 29676226 G A SPN Missense_Mutation p.E393K 0.38 tolerated(0.07) possibly_damaging(0.81) TCGA-KQ-A41R-01 16 29816197 29816197 C T KIF22 Silent p.I580I 0.55 TCGA-KQ-A41R-01 16 29998446 29998446 C G TAOK2 Silent p.L951L 0.28 TCGA-KQ-A41R-01 16 30018236 30018236 C G DOC2A Missense_Mutation p.E250Q 0.35 deleterious(0.01) benign(0.025) TCGA-KQ-A41R-01 16 3349394 3349394 T G TIGD7 Missense_Mutation p.E407D 0.08 tolerated(0.24) benign(0.06) TCGA-KQ-A41R-01 16 4723511 4723511 G A MGRN1 Missense_Mutation p.E270K 0.05 deleterious(0.03) possibly_damaging(0.59) TCGA-KQ-A41R-01 16 4723659 4723660 GT - MGRN1 Splice_Site p.X319_splice 0.12 TCGA-KQ-A41R-01 16 4934705 4934705 C G PPL Missense_Mutation p.E1317D 0.36 tolerated(0.34) benign(0.008) TCGA-KQ-A41R-01 16 50346942 50346942 G A ADCY7 Missense_Mutation p.D916N 0.51 deleterious(0.01) probably_damaging(1) TCGA-KQ-A41R-01 16 51174197 51174197 C G SALL1 Missense_Mutation p.A646P 0.44 tolerated(0.3) benign(0.003) TCGA-KQ-A41R-01 16 53358755 53358755 C T CHD9 Missense_Mutation p.S2865F 0.46 unknown(0) TCGA-KQ-A41R-01 16 53404808 53404808 C G RP11-44F14.1 RNA 0.21 TCGA-KQ-A41R-01 16 58554834 58554834 G A CNOT1 3'UTR 0.22 TCGA-KQ-A41R-01 16 597101 597101 C G CAPN15 Missense_Mutation p.P88R 0.25 deleterious_low_confidence(0.01) benign(0.347) TCGA-KQ-A41R-01 16 67904709 67904709 G T NUTF2 Nonsense_Mutation p.E93* 0.32 TCGA-KQ-A41R-01 16 70815875 70815875 C T VAC14 Nonsense_Mutation p.W281* 0.42 TCGA-KQ-A41R-01 16 72166660 72166660 C T PMFBP1 Silent p.Q478Q 0.55 TCGA-KQ-A41R-01 16 72166806 72166806 C A PMFBP1 Nonsense_Mutation p.E430* 0.51 TCGA-KQ-A41R-01 16 731220 731220 C T STUB1 Silent p.H76H 0.46 TCGA-KQ-A41R-01 16 83949097 83949097 G C MLYCD 3'UTR 0.48 TCGA-KQ-A41R-01 16 88747734 88747734 G A SNAI3 Silent p.F155F 0.33 TCGA-KQ-A41R-01 17 10402358 10402358 G C MYH1 Missense_Mutation p.S1306W 0.17 deleterious(0) possibly_damaging(0.872) TCGA-KQ-A41R-01 17 10626615 10626615 A G TMEM220 Missense_Mutation p.W107R 0.54 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 17 11511499 11511499 G A DNAH9 Missense_Mutation p.M157I 0.31 benign(0.001) TCGA-KQ-A41R-01 17 1561929 1561929 G A PRPF8 Missense_Mutation p.S1756F 0.27 deleterious(0) probably_damaging(0.937) TCGA-KQ-A41R-01 17 1673277 1673277 G A SERPINF1 Silent p.T72T 0.43 TCGA-KQ-A41R-01 17 2228458 2228458 T G SRR 3'UTR 0.64 TCGA-KQ-A41R-01 17 2594905 2594905 G A CLUH Silent p.L1248L 0.41 TCGA-KQ-A41R-01 17 26107895 26107895 C T NOS2 Missense_Mutation p.R301H 0.43 deleterious(0) possibly_damaging(0.904) TCGA-KQ-A41R-01 17 26666706 26666706 C T TNFAIP1 Silent p.L53L 0.58 TCGA-KQ-A41R-01 17 26902293 26902293 G A ALDOC Silent p.L58L 0.28 TCGA-KQ-A41R-01 17 27207779 27207779 G C FLOT2 Silent p.A400A 0.06 TCGA-KQ-A41R-01 17 29151715 29151715 C T CRLF3 5'UTR 0.28 TCGA-KQ-A41R-01 17 29221090 29221090 A G ATAD5 Missense_Mutation p.D1740G 0.26 deleterious(0.02) possibly_damaging(0.792) TCGA-KQ-A41R-01 17 30349824 30349824 C T LRRC37B Silent p.Y553Y 0.16 TCGA-KQ-A41R-01 17 30687649 30687649 G A ZNF207 Missense_Mutation p.D114N 0.24 tolerated(0.11) possibly_damaging(0.908) TCGA-KQ-A41R-01 17 3324752 3324752 T G OR3A3 Silent p.L297L 0.54 TCGA-KQ-A41R-01 17 33469200 33469200 C T NLE1 Intron 0.50 TCGA-KQ-A41R-01 17 34313609 34313609 G C CCL14 Nonsense_Mutation p.S26* 0.47 TCGA-KQ-A41R-01 17 35295625 35295625 C G LHX1 Missense_Mutation p.S44C 0.21 deleterious(0) probably_damaging(0.971) TCGA-KQ-A41R-01 17 35632862 35632862 G A ACACA Missense_Mutation p.L295F 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-KQ-A41R-01 17 36476604 36476604 C G MRPL45 Missense_Mutation p.Q205E 0.43 tolerated(0.11) benign(0.012) TCGA-KQ-A41R-01 17 36522286 36522286 C T SOCS7 Nonsense_Mutation p.R393* 0.40 TCGA-KQ-A41R-01 17 37680952 37680952 G A CDK12 Missense_Mutation p.E1041K 0.20 probably_damaging(0.91) TCGA-KQ-A41R-01 17 37881041 37881041 G A ERBB2 Silent p.L790L 0.48 TCGA-KQ-A41R-01 17 38721668 38721668 C T CCR7 5'UTR 0.30 TCGA-KQ-A41R-01 17 38936068 38936068 C T KRT27 Missense_Mutation p.E244K 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41R-01 17 39197691 39197691 T C KRTAP1-1 5'UTR 0.38 TCGA-KQ-A41R-01 17 39394322 39394322 C G KRTAP9-8 Missense_Mutation p.P7A 0.38 deleterious(0) unknown(0) TCGA-KQ-A41R-01 17 39520068 39520068 T G KRT33B 3'UTR 0.20 TCGA-KQ-A41R-01 17 39661400 39661401 - CA KRT13 Frame_Shift_Ins p.K135* 0.09 TCGA-KQ-A41R-01 17 40716516 40716516 A G COASY Missense_Mutation p.H352R 0.55 tolerated(0.39) benign(0.156) TCGA-KQ-A41R-01 17 40831650 40831650 C T CCR10 Missense_Mutation p.R337H 0.41 deleterious(0.02) possibly_damaging(0.482) TCGA-KQ-A41R-01 17 41341607 41341607 C T NBR1 Silent p.F161F 0.06 TCGA-KQ-A41R-01 17 43213595 43213595 G A ACBD4 Silent p.K28K 0.40 TCGA-KQ-A41R-01 17 4439564 4439564 G A SPNS2 Missense_Mutation p.D484N 0.50 tolerated(0.06) probably_damaging(0.998) TCGA-KQ-A41R-01 17 45886026 45886026 C T OSBPL7 Silent p.R766R 0.09 TCGA-KQ-A41R-01 17 46128703 46128703 G A NFE2L1 Missense_Mutation p.D75N 0.49 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 17 46675530 46675530 G A HOXB6 5'UTR 0.33 TCGA-KQ-A41R-01 17 46690523 46690523 G A HOXB8 3'UTR 0.50 TCGA-KQ-A41R-01 17 46933492 46933492 C T CALCOCO2 Silent p.N341N 0.11 TCGA-KQ-A41R-01 17 47899054 47899054 G A KAT7 Missense_Mutation p.D430N 0.15 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 17 5364282 5364282 C G DHX33 Missense_Mutation p.V276L 0.09 tolerated(0.05) benign(0.006) TCGA-KQ-A41R-01 17 54991060 54991060 G A TRIM25 Missense_Mutation p.S97F 0.81 deleterious(0.03) benign(0.252) TCGA-KQ-A41R-01 17 56052126 56052126 C T VEZF1 Missense_Mutation p.R425K 0.76 tolerated_low_confidence(0.08) benign(0.009) TCGA-KQ-A41R-01 17 56557375 56557375 T G HSF5 Silent p.T268T 0.73 TCGA-KQ-A41R-01 17 60503817 60503817 G C METTL2A Missense_Mutation p.K120N 0.11 tolerated(0.15) benign(0.001) TCGA-KQ-A41R-01 17 60749515 60749515 T C MRC2 Splice_Site p.X487_splice 0.73 TCGA-KQ-A41R-01 17 60799942 60799942 G A MARCH10 Silent p.A707A 0.17 TCGA-KQ-A41R-01 17 60837358 60837358 C T MARCH10 Missense_Mutation p.E74K 0.68 deleterious(0.01) possibly_damaging(0.804) TCGA-KQ-A41R-01 17 65040731 65040731 G A CACNG1 5'UTR 0.74 TCGA-KQ-A41R-01 17 66246533 66246533 G A AMZ2 Missense_Mutation p.D69N 0.13 deleterious(0.02) benign(0.167) TCGA-KQ-A41R-01 17 67012526 67012526 G A ABCA9 Silent p.H969H 0.11 TCGA-KQ-A41R-01 17 67119539 67119539 T C ABCA6 Missense_Mutation p.E426G 0.18 tolerated(1) benign(0.003) TCGA-KQ-A41R-01 17 6905047 6905047 C T ALOX12 Missense_Mutation p.H360Y 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-KQ-A41R-01 17 7124115 7124115 A C ACADVL Missense_Mutation p.K126T 0.47 tolerated(0.15) benign(0.091) TCGA-KQ-A41R-01 17 722758 722758 G T NXN Missense_Mutation p.F247L 0.22 tolerated(0.18) benign(0.174) TCGA-KQ-A41R-01 17 72949733 72949733 C T HID1 Silent p.L626L 0.51 TCGA-KQ-A41R-01 17 73836392 73836392 C T UNC13D Missense_Mutation p.D258N 0.74 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 17 74042184 74042184 C T SRP68 Missense_Mutation p.E412K 0.75 tolerated(0.54) benign(0.015) TCGA-KQ-A41R-01 17 76183420 76183420 G C AFMID 5'Flank 0.52 TCGA-KQ-A41R-01 17 7636550 7636550 A T DNAH2 Missense_Mutation p.Q182L 0.38 benign(0.003) TCGA-KQ-A41R-01 17 76419945 76419945 T C DNAH17 3'UTR 0.05 TCGA-KQ-A41R-01 17 79094138 79094138 C T AATK Missense_Mutation p.E1200K 0.10 deleterious(0) probably_damaging(0.993) TCGA-KQ-A41R-01 17 79167799 79167799 C T AZI1 Missense_Mutation p.E750K 0.62 deleterious(0) probably_damaging(0.932) TCGA-KQ-A41R-01 17 79516290 79516290 C T C17orf70 Missense_Mutation p.E449K 0.05 tolerated(0.15) benign(0.076) TCGA-KQ-A41R-01 17 80037340 80037340 C T FASN Missense_Mutation p.E2431K 0.74 tolerated(0.08) possibly_damaging(0.462) TCGA-KQ-A41R-01 17 80041240 80041240 G A FASN Silent p.N1801N 0.78 TCGA-KQ-A41R-01 17 80042457 80042457 T C FASN Missense_Mutation p.Y1567C 0.15 deleterious(0.01) probably_damaging(0.928) TCGA-KQ-A41R-01 17 8638559 8638559 G A CCDC42 Missense_Mutation p.A243V 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-KQ-A41R-01 18 10485673 10485673 C A APCDD1 Nonsense_Mutation p.S330* 0.11 TCGA-KQ-A41R-01 18 21343449 21343449 G A LAMA3 Missense_Mutation p.G382S 0.44 probably_damaging(0.973) TCGA-KQ-A41R-01 18 22040628 22040628 C T HRH4 5'UTR 0.31 TCGA-KQ-A41R-01 18 3499315 3499315 C T DLGAP1 Silent p.E934E 0.38 TCGA-KQ-A41R-01 18 51898937 51898937 G A C18orf54 Silent p.K315K 0.35 TCGA-KQ-A41R-01 18 67753908 67753908 G A RTTN Missense_Mutation p.L1439F 0.40 deleterious(0.03) benign(0.263) TCGA-KQ-A41R-01 18 7002279 7002279 G A LAMA1 Missense_Mutation p.H1456Y 0.22 tolerated(0.09) benign(0.008) TCGA-KQ-A41R-01 18 72168590 72168590 G A CNDP2 Silent p.Q29Q 0.35 TCGA-KQ-A41R-01 18 77246539 77246539 G A NFATC1 Missense_Mutation p.G782E 0.39 tolerated(0.4) benign(0.211) TCGA-KQ-A41R-01 18 8777847 8777847 G A SOGA2 Missense_Mutation p.R125K 0.35 deleterious(0.03) benign(0.028) TCGA-KQ-A41R-01 19 10088293 10088293 G T COL5A3 Missense_Mutation p.P1035T 0.48 probably_damaging(0.997) TCGA-KQ-A41R-01 19 11031782 11031782 C A CARM1 Missense_Mutation p.H532N 0.12 tolerated_low_confidence(0.12) benign(0.001) TCGA-KQ-A41R-01 19 1112402 1112402 G A SBNO2 Silent p.F838F 0.38 TCGA-KQ-A41R-01 19 11942478 11942478 G A ZNF440 Missense_Mutation p.E163K 0.20 tolerated(0.11) possibly_damaging(0.832) TCGA-KQ-A41R-01 19 12154836 12154836 G A ZNF878 Silent p.F460F 0.41 TCGA-KQ-A41R-01 19 1231110 1231110 C A C19orf26 Missense_Mutation p.A382S 0.54 tolerated_low_confidence(0.93) benign(0.023) TCGA-KQ-A41R-01 19 12945926 12945926 T G RTBDN 5'UTR 0.57 TCGA-KQ-A41R-01 19 13260626 13260626 C T STX10 Missense_Mutation p.E41K 0.39 deleterious(0.01) possibly_damaging(0.513) TCGA-KQ-A41R-01 19 13470426 13470428 GAG - CACNA1A In_Frame_Del p.L324del 0.43 TCGA-KQ-A41R-01 19 13991286 13991286 C T NANOS3 Missense_Mutation p.S183L 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-KQ-A41R-01 19 14143259 14143259 G A IL27RA Nonsense_Mutation p.W54* 0.41 TCGA-KQ-A41R-01 19 14199905 14199905 T A SAMD1 Silent p.A302A 0.39 TCGA-KQ-A41R-01 19 15061118 15061118 C G SLC1A6 Missense_Mutation p.E528D 0.15 tolerated(0.26) benign(0.001) TCGA-KQ-A41R-01 19 15198236 15198236 C T OR1I1 Silent p.I120I 0.43 TCGA-KQ-A41R-01 19 16192852 16192852 G A TPM4 Missense_Mutation p.E124K 0.44 deleterious(0.01) benign(0.055) TCGA-KQ-A41R-01 19 17160850 17160850 C T HAUS8 Missense_Mutation p.E356K 0.35 tolerated(0.11) benign(0.046) TCGA-KQ-A41R-01 19 18707710 18707710 C G CRLF1 Missense_Mutation p.D283H 0.23 deleterious(0.01) probably_damaging(0.937) TCGA-KQ-A41R-01 19 18963874 18963874 G A UPF1 Missense_Mutation p.D351N 0.30 tolerated(0.1) benign(0.063) TCGA-KQ-A41R-01 19 2043520 2043520 T A MKNK2 Missense_Mutation p.Y134F 0.43 deleterious(0.03) possibly_damaging(0.902) TCGA-KQ-A41R-01 19 2076859 2076859 T C MOB3A Missense_Mutation p.Y192C 0.16 deleterious(0.05) possibly_damaging(0.908) TCGA-KQ-A41R-01 19 23456883 23456883 C T RP11-15H20.7 RNA 0.40 TCGA-KQ-A41R-01 19 24310446 24310458 TGAAAAATGTGGC - ZNF254 Frame_Shift_Del p.C548* 0.20 TCGA-KQ-A41R-01 19 35614391 35614391 G A FXYD3 3'UTR 0.35 TCGA-KQ-A41R-01 19 35715852 35715852 G A FAM187B Missense_Mutation p.S329F 0.41 tolerated(0.14) benign(0.064) TCGA-KQ-A41R-01 19 36124154 36124154 G T RBM42 Silent p.L228L 0.15 TCGA-KQ-A41R-01 19 37209899 37209899 A G ZNF567 Silent p.Q60Q 0.39 TCGA-KQ-A41R-01 19 3736305 3736305 G A TJP3 Missense_Mutation p.D433N 0.40 deleterious(0.02) probably_damaging(1) TCGA-KQ-A41R-01 19 38987111 38987111 C G RYR1 Missense_Mutation p.I2242M 0.43 benign(0.279) TCGA-KQ-A41R-01 19 39002907 39002908 GA - RYR1 Frame_Shift_Del p.E3086Dfs*69 0.38 TCGA-KQ-A41R-01 19 39374367 39374367 C A SIRT2 Silent p.G177G 0.41 TCGA-KQ-A41R-01 19 39521874 39521874 G A FBXO27 Nonsense_Mutation p.Q151* 0.37 TCGA-KQ-A41R-01 19 39949686 39949686 A T SUPT5H Missense_Mutation p.K144I 0.04 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 19 39959973 39959973 C T SUPT5H Nonsense_Mutation p.Q437* 0.52 TCGA-KQ-A41R-01 19 41008729 41008729 A G SPTBN4 Silent p.L417L 0.13 TCGA-KQ-A41R-01 19 43026175 43026175 G A CEACAM1 Silent p.L202L 0.37 TCGA-KQ-A41R-01 19 4364174 4364174 C T SH3GL1 Missense_Mutation p.E126K 0.48 deleterious(0.01) possibly_damaging(0.732) TCGA-KQ-A41R-01 19 44791464 44791464 C T ZNF235 Silent p.E708E 0.26 TCGA-KQ-A41R-01 19 45535910 45535910 G A RELB Silent p.E370E 0.38 TCGA-KQ-A41R-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.36 deleterious(0) probably_damaging(0.979) TCGA-KQ-A41R-01 19 45899649 45899649 G A PPP1R13L Missense_Mutation p.S253F 0.42 deleterious(0) probably_damaging(0.931) TCGA-KQ-A41R-01 19 45901567 45901567 C T PPP1R13L Missense_Mutation p.E4K 0.19 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-KQ-A41R-01 19 46141846 46141846 C T EML2 Missense_Mutation p.M233I 0.32 deleterious(0.03) benign(0.198) TCGA-KQ-A41R-01 19 47941126 47941126 C G SLC8A2 Missense_Mutation p.E664Q 0.18 tolerated(0.05) benign(0.27) TCGA-KQ-A41R-01 19 48197826 48197826 G T GLTSCR1 Missense_Mutation p.S913I 0.30 possibly_damaging(0.629) TCGA-KQ-A41R-01 19 4861422 4861422 C T PLIN3 Intron 0.39 TCGA-KQ-A41R-01 19 48807271 48807271 G A CCDC114 Silent p.L227L 0.36 TCGA-KQ-A41R-01 19 49120576 49120576 C T RPL18 Silent p.R65R 0.40 TCGA-KQ-A41R-01 19 49143472 49143472 G A CA11 Silent p.V117V 0.36 TCGA-KQ-A41R-01 19 50139022 50139022 C T RRAS Missense_Mutation p.E181K 0.40 tolerated(0.15) benign(0.328) TCGA-KQ-A41R-01 19 50360975 50360975 C T PTOV1 Missense_Mutation p.S247L 0.31 deleterious(0.03) benign(0.007) TCGA-KQ-A41R-01 19 50393654 50393654 G T IL4I1 Missense_Mutation p.A348E 0.48 deleterious(0) probably_damaging(0.978) TCGA-KQ-A41R-01 19 5222811 5222811 G A PTPRS Nonsense_Mutation p.Q998* 0.49 TCGA-KQ-A41R-01 19 52618643 52618643 G A ZNF616 Missense_Mutation p.L592F 0.41 deleterious(0) possibly_damaging(0.827) TCGA-KQ-A41R-01 19 53086306 53086306 G A ZNF701 Missense_Mutation p.D398N 0.15 deleterious(0.03) benign(0.133) TCGA-KQ-A41R-01 19 53667825 53667825 T G ZNF665 Missense_Mutation p.T640P 0.18 tolerated(0.21) benign(0.242) TCGA-KQ-A41R-01 19 53793423 53793423 G T BIRC8 Missense_Mutation p.L69M 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-KQ-A41R-01 19 54617950 54617950 G A TFPT Silent p.L52L 0.40 TCGA-KQ-A41R-01 19 54664710 54664710 G A TMC4 Silent p.I632I 0.40 TCGA-KQ-A41R-01 19 54963384 54963384 G A LENG8 Silent p.K51K 0.21 TCGA-KQ-A41R-01 19 55421386 55421386 G T NCR1 Nonsense_Mutation p.E215* 0.18 TCGA-KQ-A41R-01 19 55494462 55494462 C T NLRP2 Missense_Mutation p.H466Y 0.43 tolerated(0.06) benign(0.358) TCGA-KQ-A41R-01 19 55713462 55713462 C T PTPRH Missense_Mutation p.G372E 0.41 possibly_damaging(0.737) TCGA-KQ-A41R-01 19 57703293 57703293 G A ZNF264 Silent p.A4A 0.57 TCGA-KQ-A41R-01 19 57839583 57839594 GGAGAAGCCCTA - ZNF543 In_Frame_Del p.E252_Y255del 0.38 TCGA-KQ-A41R-01 19 58921357 58921357 C T ZNF584 Missense_Mutation p.T23M 0.41 deleterious(0) benign(0.011) TCGA-KQ-A41R-01 19 6981160 6981160 C T EMR4P RNA 0.25 TCGA-KQ-A41R-01 19 8842008 8842008 C T OR2Z1 Silent p.I206I 0.41 TCGA-KQ-A41R-01 19 9325105 9325105 T G OR7D4 Missense_Mutation p.N137H 0.34 deleterious(0.01) probably_damaging(0.968) TCGA-KQ-A41R-01 19 9639909 9639909 A G ZNF426 Missense_Mutation p.I271T 0.39 deleterious(0.01) benign(0.373) TCGA-KQ-A41R-01 19 9730169 9730169 C T ZNF561 5'UTR 0.37 TCGA-KQ-A41R-01 1 104113230 104113230 G A AMY2B Intron 0.16 TCGA-KQ-A41R-01 1 10425497 10425497 C T KIF1B Missense_Mutation p.R1469C 0.30 deleterious(0) possibly_damaging(0.736) TCGA-KQ-A41R-01 1 109197402 109197402 G A HENMT1 Missense_Mutation p.H112Y 0.40 deleterious(0.02) possibly_damaging(0.793) TCGA-KQ-A41R-01 1 109957978 109957978 G A PSMA5 Missense_Mutation p.S35F 0.41 deleterious(0.01) benign(0.382) TCGA-KQ-A41R-01 1 111217021 111217021 C T KCNA3 Missense_Mutation p.M137I 0.35 tolerated(0.42) benign(0.223) TCGA-KQ-A41R-01 1 114424474 114424474 C T BCL2L15 Missense_Mutation p.G132E 0.43 tolerated(0.23) benign(0.086) TCGA-KQ-A41R-01 1 115226850 115226850 C T AMPD1 Missense_Mutation p.A206T 0.36 tolerated(0.58) benign(0.001) TCGA-KQ-A41R-01 1 116206872 116206872 C T VANGL1 Silent p.Y265Y 0.45 TCGA-KQ-A41R-01 1 119428085 119428085 G A TBX15 Missense_Mutation p.S254L 0.18 tolerated(0.21) probably_damaging(0.978) TCGA-KQ-A41R-01 1 119466096 119466096 G A TBX15 Missense_Mutation p.T169I 0.68 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 1 120438392 120438392 C T ADAM30 Missense_Mutation p.A190T 0.66 tolerated(0.14) benign(0.086) TCGA-KQ-A41R-01 1 12568995 12568995 A C VPS13D Missense_Mutation p.N4362H 0.23 probably_damaging(0.991) TCGA-KQ-A41R-01 1 12907844 12907844 G A HNRNPCL1 Missense_Mutation p.S100L 0.06 deleterious(0.01) benign(0.025) TCGA-KQ-A41R-01 1 144881466 144881466 G A PDE4DIP Nonsense_Mutation p.Q1244* 0.12 TCGA-KQ-A41R-01 1 145282173 145282173 C T NOTCH2NL 3'UTR 0.14 TCGA-KQ-A41R-01 1 145367783 145367783 G C NBPF10 Missense_Mutation p.R3460T 0.05 benign(0.303) TCGA-KQ-A41R-01 1 150532578 150532578 T C ADAMTSL4 Missense_Mutation p.V1044A 0.04 deleterious(0.01) probably_damaging(0.969) TCGA-KQ-A41R-01 1 152186019 152186019 G A HRNR Nonsense_Mutation p.Q2696* 0.16 TCGA-KQ-A41R-01 1 152279767 152279767 G A FLG Missense_Mutation p.S2532L 0.11 benign(0.388) TCGA-KQ-A41R-01 1 152325882 152325882 T A FLG2 Silent p.T1460T 0.70 TCGA-KQ-A41R-01 1 153598947 153598947 A C S100A13 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-KQ-A41R-01 1 153905712 153905712 G A DENND4B Silent p.L1138L 0.68 TCGA-KQ-A41R-01 1 154524587 154524587 T C UBE2Q1 Silent p.L316L 0.19 TCGA-KQ-A41R-01 1 155003042 155003042 G C DCST2 Silent p.L295L 0.70 TCGA-KQ-A41R-01 1 155187043 155187043 A G MTX1 3'Flank 0.20 TCGA-KQ-A41R-01 1 155319216 155319216 G A ASH1L Silent p.L2486L 0.16 TCGA-KQ-A41R-01 1 155744850 155744850 C A GON4L Missense_Mutation p.D765Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 1 161205687 161205687 C T NR1I3 Missense_Mutation p.C63Y 0.13 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 1 16475133 16475133 C T EPHA2 Missense_Mutation p.C188Y 0.48 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41R-01 1 168277998 168277998 C G TBX19 Nonsense_Mutation p.S312* 0.14 TCGA-KQ-A41R-01 1 168511334 168511334 C T XCL2 Missense_Mutation p.E25K 0.68 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 1 16918403 16918403 G A NBPF1 Silent p.L38L 0.06 TCGA-KQ-A41R-01 1 169824963 169824963 T A SCYL3 Missense_Mutation p.D483V 0.15 deleterious(0.05) benign(0.045) TCGA-KQ-A41R-01 1 173019957 173019957 C T TNFSF18 Nonsense_Mutation p.W49* 0.75 TCGA-KQ-A41R-01 1 17319034 17319034 G C ATP13A2 Missense_Mutation p.Q598E 0.09 tolerated(0.08) benign(0.016) TCGA-KQ-A41R-01 1 173921267 173921267 C T RC3H1 Missense_Mutation p.E794K 0.17 tolerated(0.09) benign(0.113) TCGA-KQ-A41R-01 1 174983887 174983887 C T MRPS14 Missense_Mutation p.R102Q 0.32 tolerated(0.22) possibly_damaging(0.871) TCGA-KQ-A41R-01 1 174987626 174987626 G T MRPS14 Silent p.A44A 0.04 TCGA-KQ-A41R-01 1 177133563 177133563 G C ASTN1 Missense_Mutation p.L84V 0.09 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-KQ-A41R-01 1 180471336 180471336 C T ACBD6 Silent p.G22G 0.68 TCGA-KQ-A41R-01 1 182026326 182026326 C T ZNF648 Missense_Mutation p.G274S 0.83 tolerated(0.07) benign(0.137) TCGA-KQ-A41R-01 1 183506287 183506300 CCCTGGTTGATTTC - SMG7 Frame_Shift_Del p.P391Sfs*4 0.65 TCGA-KQ-A41R-01 1 193099330 193099330 A T CDC73 Missense_Mutation p.R88S 0.59 deleterious(0.01) probably_damaging(0.982) TCGA-KQ-A41R-01 1 19447915 19447915 G A UBR4 Silent p.F3303F 0.28 TCGA-KQ-A41R-01 1 196227403 196227403 G A KCNT2 Silent p.Y1044Y 0.17 TCGA-KQ-A41R-01 1 196874354 196874354 G A CFHR4 Missense_Mutation p.E124K 0.07 deleterious(0.05) benign(0.005) TCGA-KQ-A41R-01 1 201018138 201018138 G A CACNA1S Missense_Mutation p.A1444V 0.17 deleterious(0) probably_damaging(0.96) TCGA-KQ-A41R-01 1 202724491 202724491 C T KDM5B Missense_Mutation p.M482I 0.73 deleterious(0) benign(0.291) TCGA-KQ-A41R-01 1 202880253 202880253 G C KLHL12 Missense_Mutation p.P216A 0.06 tolerated(0.32) benign(0.109) TCGA-KQ-A41R-01 1 203276489 203276489 C T BTG2 Missense_Mutation p.L134F 0.19 tolerated(0.71) benign(0.001) TCGA-KQ-A41R-01 1 205116514 205116514 C G DSTYK 3'UTR 0.25 TCGA-KQ-A41R-01 1 207195452 207195452 C A C1orf116 Nonsense_Mutation p.E553* 0.66 TCGA-KQ-A41R-01 1 208206823 208206823 G A PLXNA2 Silent p.D1632D 0.18 TCGA-KQ-A41R-01 1 211192582 211192582 G C KCNH1 Nonsense_Mutation p.S192* 0.27 TCGA-KQ-A41R-01 1 212273891 212273891 C T DTL Missense_Mutation p.S520L 0.14 tolerated(0.25) benign(0.017) TCGA-KQ-A41R-01 1 212798364 212798364 G T FAM71A Missense_Mutation p.D49Y 0.04 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 1 214505624 214505624 G A SMYD2 Intron 0.88 TCGA-KQ-A41R-01 1 21546402 21546402 C T ECE1 3'UTR 0.16 TCGA-KQ-A41R-01 1 215775482 215775482 G A KCTD3 Silent p.L359L 0.17 TCGA-KQ-A41R-01 1 215781434 215781434 C T KCTD3 Missense_Mutation p.S462F 0.64 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 1 22150100 22150100 C G LDLRAD2 3'UTR 0.18 TCGA-KQ-A41R-01 1 22181827 22181827 C T HSPG2 Nonsense_Mutation p.W1989* 0.40 TCGA-KQ-A41R-01 1 230903449 230903449 C T CAPN9 Silent p.F233F 0.18 TCGA-KQ-A41R-01 1 23695962 23695962 G A C1orf213 Missense_Mutation p.D58N 0.46 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-KQ-A41R-01 1 241798390 241798390 T C CHML Missense_Mutation p.R227G 0.10 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 1 241803419 241803419 C T OPN3 Silent p.L46L 0.68 TCGA-KQ-A41R-01 1 248457958 248457958 T G OR2T12 Missense_Mutation p.N308T 0.14 tolerated(0.33) benign(0.002) TCGA-KQ-A41R-01 1 26190184 26190184 C T PAQR7 Silent p.A49A 0.54 TCGA-KQ-A41R-01 1 27268078 27268078 C T NUDC Missense_Mutation p.S97L 0.24 tolerated(0.29) benign(0.001) TCGA-KQ-A41R-01 1 27745512 27745512 C T WASF2 Missense_Mutation p.E70K 0.32 tolerated(0.07) unknown(0) TCGA-KQ-A41R-01 1 28071294 28071294 C T FAM76A Missense_Mutation p.R196C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41R-01 1 33945147 33945147 C G ZSCAN20 Silent p.L86L 0.19 TCGA-KQ-A41R-01 1 36020043 36020043 G A KIAA0319L Missense_Mutation p.S17L 0.40 tolerated_low_confidence(0.13) benign(0.001) TCGA-KQ-A41R-01 1 36307064 36307064 G A AGO4 Missense_Mutation p.E675K 0.33 deleterious(0) probably_damaging(0.979) TCGA-KQ-A41R-01 1 36645942 36645942 A G MAP7D1 3'UTR 0.49 TCGA-KQ-A41R-01 1 3753106 3753106 C T CEP104 Missense_Mutation p.A424T 0.28 deleterious(0.04) probably_damaging(0.962) TCGA-KQ-A41R-01 1 38003177 38003177 C T SNIP1 3'UTR 0.38 TCGA-KQ-A41R-01 1 41945093 41945093 C T EDN2 Nonsense_Mutation p.W175* 0.16 TCGA-KQ-A41R-01 1 45244268 45244268 G C RPS8 Missense_Mutation p.G180R 0.11 deleterious(0.01) probably_damaging(1) TCGA-KQ-A41R-01 1 46159551 46159551 G A TMEM69 Missense_Mutation p.G240R 0.34 tolerated(0.06) possibly_damaging(0.796) TCGA-KQ-A41R-01 1 55266612 55266612 G A TTC22 Silent p.F75F 0.29 TCGA-KQ-A41R-01 1 63113920 63113920 C T DOCK7 Missense_Mutation p.D197N 0.38 tolerated(0.11) benign(0.111) TCGA-KQ-A41R-01 1 65849923 65849923 C T DNAJC6 Silent p.F238F 0.33 TCGA-KQ-A41R-01 1 6713973 6713973 C T DNAJC11 Missense_Mutation p.E169K 0.46 deleterious(0) benign(0.418) TCGA-KQ-A41R-01 1 78044536 78044536 T A ZZZ3 Nonsense_Mutation p.K701* 0.44 TCGA-KQ-A41R-01 1 84874150 84874150 G A DNASE2B Missense_Mutation p.D112N 0.35 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 1 92757025 92757025 C G GLMN Missense_Mutation p.E79Q 0.12 deleterious(0.03) benign(0.139) TCGA-KQ-A41R-01 1 93645745 93645745 G A TMED5 Missense_Mutation p.P19S 0.46 tolerated(0.92) benign(0.002) TCGA-KQ-A41R-01 1 93812344 93812344 C T DR1 Missense_Mutation p.H48Y 0.48 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 1 94058021 94058021 G C BCAR3 Intron 0.42 TCGA-KQ-A41R-01 1 95709781 95709781 G T RWDD3 Missense_Mutation p.V34L 0.51 tolerated(0.07) benign(0.043) TCGA-KQ-A41R-01 20 1099530 1099530 G A PSMF1 Silent p.L38L 0.38 TCGA-KQ-A41R-01 20 1459139 1459139 C T SIRPB2 Missense_Mutation p.G189R 0.43 deleterious(0.03) possibly_damaging(0.585) TCGA-KQ-A41R-01 20 15210597 15210597 A G MACROD2 Missense_Mutation p.T144A 0.34 tolerated(0.12) probably_damaging(0.988) TCGA-KQ-A41R-01 20 1559092 1559092 T A RP4-576H24.4 Missense_Mutation p.N108Y 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-KQ-A41R-01 20 20024192 20024192 C T CRNKL1 Missense_Mutation p.G467S 0.31 tolerated(0.18) benign(0.146) TCGA-KQ-A41R-01 20 21321406 21321406 C G XRN2 Silent p.A442A 0.19 TCGA-KQ-A41R-01 20 23029937 23029937 C T THBD Missense_Mutation p.D69N 0.70 deleterious(0) possibly_damaging(0.891) TCGA-KQ-A41R-01 20 271280 271280 C T C20orf96 5'UTR 0.42 TCGA-KQ-A41R-01 20 29623178 29623178 C A FRG1B 5'UTR 0.04 TCGA-KQ-A41R-01 20 30914586 30914586 A C KIF3B Silent p.I587I 0.50 TCGA-KQ-A41R-01 20 33440245 33440245 C T GGT7 Silent p.T472T 0.36 TCGA-KQ-A41R-01 20 34055313 34055313 G A CEP250 Missense_Mutation p.E262K 0.46 benign(0.074) TCGA-KQ-A41R-01 20 36634740 36634740 C G TTI1 Missense_Mutation p.E788Q 0.35 tolerated(0.28) benign(0.029) TCGA-KQ-A41R-01 20 36662281 36662281 C T RPRD1B 5'UTR 0.36 TCGA-KQ-A41R-01 20 42223379 42223379 A G IFT52 Missense_Mutation p.Y14C 0.44 tolerated(0.3) benign(0) TCGA-KQ-A41R-01 20 422683 422683 C G TBC1D20 Missense_Mutation p.M114I 0.11 tolerated(0.34) possibly_damaging(0.679) TCGA-KQ-A41R-01 20 42680112 42680112 C T TOX2 Missense_Mutation p.P193L 0.34 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 20 43108659 43108659 C G TTPAL Missense_Mutation p.S7C 0.44 tolerated_low_confidence(0.14) benign(0.006) TCGA-KQ-A41R-01 20 43108694 43108694 G A TTPAL Missense_Mutation p.E19K 0.45 tolerated_low_confidence(0.28) benign(0.08) TCGA-KQ-A41R-01 20 43851867 43851867 G A SEMG2 Missense_Mutation p.D532N 0.48 tolerated(0.59) unknown(0) TCGA-KQ-A41R-01 20 46281161 46281161 C T NCOA3 Nonsense_Mutation p.Q1320* 0.12 TCGA-KQ-A41R-01 20 47602101 47602101 G T ARFGEF2 Missense_Mutation p.D743Y 0.19 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 20 52192657 52192657 G A ZNF217 Silent p.I882I 0.37 TCGA-KQ-A41R-01 20 53205130 53205130 G A DOK5 Missense_Mutation p.E95K 0.20 deleterious(0.01) benign(0.311) TCGA-KQ-A41R-01 20 5565067 5565067 A G GPCPD1 Intron 0.43 TCGA-KQ-A41R-01 20 57470679 57470679 C T GNAS Missense_Mutation p.S694F 0.35 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 20 58440657 58440657 C T SYCP2 Missense_Mutation p.D1477N 0.43 tolerated(0.07) possibly_damaging(0.9) TCGA-KQ-A41R-01 20 58571597 58571597 G A CDH26 Intron 0.39 TCGA-KQ-A41R-01 20 6022007 6022007 G A LRRN4 Silent p.V628V 0.37 TCGA-KQ-A41R-01 20 60888194 60888194 C T LAMA5 Missense_Mutation p.E2969K 0.44 benign(0.073) TCGA-KQ-A41R-01 20 61542853 61542853 C T DIDO1 Missense_Mutation p.E38K 0.23 probably_damaging(0.997) TCGA-KQ-A41R-01 21 33651105 33651105 G A MIS18A Missense_Mutation p.A74V 0.46 tolerated(0.19) benign(0.226) TCGA-KQ-A41R-01 21 34099111 34099125 CATGAGACATTCTTC - SYNJ1 In_Frame_Del p.E67_M71del 0.38 TCGA-KQ-A41R-01 21 35445926 35445926 C G MRPS6 5'UTR 0.60 TCGA-KQ-A41R-01 21 37445054 37445054 G A CBR1 Silent p.A236A 0.43 TCGA-KQ-A41R-01 21 38884428 38884428 G A DYRK1A Missense_Mutation p.R629K 0.45 tolerated_low_confidence(0.16) possibly_damaging(0.745) TCGA-KQ-A41R-01 21 45076537 45076537 C A HSF2BP Missense_Mutation p.D40Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41R-01 21 45511859 45511859 G A TRAPPC10 Missense_Mutation p.D976N 0.43 tolerated(0.19) benign(0.003) TCGA-KQ-A41R-01 21 45550618 45550618 G C PWP2 Missense_Mutation p.G909R 0.44 tolerated_low_confidence(0.25) benign(0.077) TCGA-KQ-A41R-01 21 45833852 45833852 C T TRPM2 Missense_Mutation p.T1014M 0.39 deleterious(0.01) possibly_damaging(0.708) TCGA-KQ-A41R-01 21 47359965 47359965 C T PCBP3 Missense_Mutation p.R311C 0.20 tolerated(0.08) benign(0.168) TCGA-KQ-A41R-01 21 47769704 47769704 C T PCNT Silent p.F438F 0.42 TCGA-KQ-A41R-01 22 17672653 17672653 C G CECR1 Missense_Mutation p.K267N 0.37 tolerated(0.14) benign(0.045) TCGA-KQ-A41R-01 22 17672664 17672664 A T CECR1 Missense_Mutation p.W264R 0.34 deleterious(0.01) benign(0.277) TCGA-KQ-A41R-01 22 19132084 19132084 C G DGCR14 Missense_Mutation p.E24Q 0.25 tolerated_low_confidence(0.43) benign(0) TCGA-KQ-A41R-01 22 19504387 19504387 G A CDC45 Missense_Mutation p.R568Q 0.69 deleterious(0.04) benign(0.408) TCGA-KQ-A41R-01 22 20229604 20229604 C T RTN4R Missense_Mutation p.R351K 0.33 tolerated(1) benign(0.028) TCGA-KQ-A41R-01 22 20783614 20783614 C G SCARF2 Missense_Mutation p.G485R 0.13 deleterious(0.01) probably_damaging(0.948) TCGA-KQ-A41R-01 22 21272283 21272283 C T CRKL Missense_Mutation p.R21C 0.41 deleterious(0) possibly_damaging(0.673) TCGA-KQ-A41R-01 22 21386081 21386081 G A SLC7A4 Silent p.T7T 0.31 TCGA-KQ-A41R-01 22 22057739 22057739 C G YPEL1 Missense_Mutation p.E64Q 0.42 tolerated(0.15) benign(0.113) TCGA-KQ-A41R-01 22 22127165 22127165 G C MAPK1 Missense_Mutation p.D321E 0.33 tolerated(0.06) benign(0.332) TCGA-KQ-A41R-01 22 24129431 24129431 C A SMARCB1 Missense_Mutation p.F25L 0.50 tolerated(0.61) benign(0.001) TCGA-KQ-A41R-01 22 24761536 24761536 C A SPECC1L Missense_Mutation p.P974T 0.13 deleterious(0.05) benign(0.293) TCGA-KQ-A41R-01 22 26873079 26873079 C G HPS4 Missense_Mutation p.L52F 0.05 deleterious(0.02) possibly_damaging(0.843) TCGA-KQ-A41R-01 22 29176964 29176964 G T CCDC117 Nonsense_Mutation p.E90* 0.14 TCGA-KQ-A41R-01 22 29708004 29708004 G T GAS2L1 3'UTR 0.24 TCGA-KQ-A41R-01 22 29745221 29745221 C T AP1B1 Missense_Mutation p.D475N 0.55 deleterious(0.03) probably_damaging(0.952) TCGA-KQ-A41R-01 22 29745234 29745234 G A AP1B1 Silent p.L470L 0.32 TCGA-KQ-A41R-01 22 29904335 29904335 A T THOC5 3'UTR 0.62 TCGA-KQ-A41R-01 22 30054229 30054229 C T NF2 Silent p.Y217Y 0.62 TCGA-KQ-A41R-01 22 31741099 31741099 G A PATZ1 Silent p.L164L 0.40 TCGA-KQ-A41R-01 22 36649245 36649245 C T APOL1 5'UTR 0.33 TCGA-KQ-A41R-01 22 37329987 37329987 C T CSF2RB Silent p.N422N 0.09 TCGA-KQ-A41R-01 22 38201565 38201565 C T H1F0 Missense_Mutation p.S5F 0.47 deleterious_low_confidence(0.02) benign(0.354) TCGA-KQ-A41R-01 22 38822688 38822688 A T KCNJ4 3'UTR 0.15 TCGA-KQ-A41R-01 22 39425464 39425464 C T APOBEC3D Silent p.T234T 0.28 TCGA-KQ-A41R-01 22 41936731 41936731 G A POLR3H Silent p.F60F 0.26 TCGA-KQ-A41R-01 22 42191759 42191759 G A MEI1 Silent p.L1229L 0.55 TCGA-KQ-A41R-01 22 42461877 42461877 G A NAGA Silent p.I208I 0.31 TCGA-KQ-A41R-01 22 45749910 45749910 G C SMC1B Nonsense_Mutation p.S1074* 0.48 TCGA-KQ-A41R-01 22 45768087 45768087 G A SMC1B Missense_Mutation p.S715L 0.55 deleterious(0) possibly_damaging(0.575) TCGA-KQ-A41R-01 22 46760016 46760016 G A CELSR1 Missense_Mutation p.S2971F 0.58 deleterious(0.01) possibly_damaging(0.851) TCGA-KQ-A41R-01 22 46790080 46790080 C T CELSR1 Missense_Mutation p.D1975N 0.70 tolerated(0.14) benign(0.012) TCGA-KQ-A41R-01 22 50887023 50887023 G A SBF1 Silent p.T1700T 0.47 TCGA-KQ-A41R-01 2 102503655 102503655 G A MAP4K4 Missense_Mutation p.D1098N 0.44 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-KQ-A41R-01 2 103095542 103095542 G A SLC9A4 Silent p.L167L 0.58 TCGA-KQ-A41R-01 2 103128689 103128689 G A SLC9A4 Missense_Mutation p.E506K 0.40 deleterious(0.02) probably_damaging(0.922) TCGA-KQ-A41R-01 2 108869869 108869869 C T SULT1C3 Missense_Mutation p.P124S 0.29 deleterious(0) possibly_damaging(0.901) TCGA-KQ-A41R-01 2 108872101 108872101 T A SULT1C3 Missense_Mutation p.M158K 0.59 tolerated(0.29) benign(0.143) TCGA-KQ-A41R-01 2 10918703 10918703 C T ATP6V1C2 Silent p.P323P 0.64 TCGA-KQ-A41R-01 2 112732995 112732995 G A MERTK Missense_Mutation p.E364K 0.49 deleterious(0.02) probably_damaging(0.976) TCGA-KQ-A41R-01 2 113763616 113763616 C T IL36A Nonsense_Mutation p.Q26* 0.55 TCGA-KQ-A41R-01 2 121742146 121742146 G A GLI2 Missense_Mutation p.V595I 0.43 tolerated(0.2) probably_damaging(0.987) TCGA-KQ-A41R-01 2 127808788 127808788 G A BIN1 Missense_Mutation p.T468I 0.08 tolerated(0.16) benign(0.022) TCGA-KQ-A41R-01 2 128051627 128051627 C T ERCC3 Intron 0.53 TCGA-KQ-A41R-01 2 130899786 130899786 C T CCDC74B Missense_Mutation p.G155D 0.43 tolerated(0.17) benign(0.281) TCGA-KQ-A41R-01 2 132288320 132288320 G A CCDC74A Missense_Mutation p.G155D 0.09 tolerated(0.15) benign(0.235) TCGA-KQ-A41R-01 2 132290434 132290434 C T CCDC74A Intron 0.38 TCGA-KQ-A41R-01 2 145147497 145147497 G A ZEB2 Nonsense_Mutation p.Q1056* 0.26 TCGA-KQ-A41R-01 2 152289711 152289732 TTGGACCTCATCTTCCTGCTAA - RIF1 Frame_Shift_Del p.G350Lfs*8 0.29 TCGA-KQ-A41R-01 2 157407125 157407125 G C GPD2 Missense_Mutation p.D280H 0.28 deleterious(0.05) possibly_damaging(0.695) TCGA-KQ-A41R-01 2 158272447 158272447 G A CYTIP Silent p.F274F 0.58 TCGA-KQ-A41R-01 2 159535122 159535122 A T PKP4 Missense_Mutation p.S1096C 0.38 deleterious(0.02) possibly_damaging(0.873) TCGA-KQ-A41R-01 2 160609008 160609008 G A MARCH7 Missense_Mutation p.C570Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 2 162762367 162762367 A G SLC4A10 Missense_Mutation p.H656R 0.08 tolerated(0.09) benign(0.124) TCGA-KQ-A41R-01 2 163302894 163302894 G C KCNH7 Missense_Mutation p.N396K 0.04 deleterious(0.01) benign(0.065) TCGA-KQ-A41R-01 2 166166894 166166894 C G SCN2A Missense_Mutation p.I253M 0.69 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 2 170665377 170665377 G A SSB Missense_Mutation p.E212K 0.24 tolerated(0.19) benign(0.045) TCGA-KQ-A41R-01 2 176995393 176995415 GCCCGGCCGCTGCCTACCAGGCC - HOXD8 Frame_Shift_Del p.A102Pfs*32 0.89 TCGA-KQ-A41R-01 2 178977232 178977232 G A RBM45 5'UTR 0.57 TCGA-KQ-A41R-01 2 180810250 180810250 C T CWC22 Missense_Mutation p.R778K 0.67 deleterious_low_confidence(0.04) benign(0.004) TCGA-KQ-A41R-01 2 188216972 188216972 T G CALCRL Missense_Mutation p.K333Q 0.75 deleterious(0.02) probably_damaging(0.998) TCGA-KQ-A41R-01 2 196602742 196602742 G A DNAH7 Missense_Mutation p.S3993F 0.87 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 2 197953517 197953517 C T ANKRD44 Missense_Mutation p.E204K 0.33 tolerated(0.13) benign(0.283) TCGA-KQ-A41R-01 2 204304303 204304303 G A RAPH1 Missense_Mutation p.P1204S 0.41 unknown(0) TCGA-KQ-A41R-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.62 deleterious(0.04) benign(0.233) TCGA-KQ-A41R-01 2 207041651 207041651 G A GPR1 Silent p.I107I 0.71 TCGA-KQ-A41R-01 2 20871011 20871011 C T GDF7 Silent p.T393T 0.19 TCGA-KQ-A41R-01 2 213403175 213403175 G A ERBB4 Missense_Mutation p.S27L 0.84 tolerated(0.25) benign(0) TCGA-KQ-A41R-01 2 219922390 219922390 C T IHH Silent p.L114L 0.78 TCGA-KQ-A41R-01 2 220430010 220430010 C T OBSL1 Silent p.E787E 0.75 TCGA-KQ-A41R-01 2 233527596 233527596 G T EFHD1 Silent p.L129L 0.64 TCGA-KQ-A41R-01 2 233677127 233677127 C T GIGYF2 Missense_Mutation p.S699L 0.38 possibly_damaging(0.87) TCGA-KQ-A41R-01 2 234622135 234622135 G C UGT1A5 Silent p.S166S 0.69 TCGA-KQ-A41R-01 2 235949593 235949593 G A SH3BP4 Silent p.V60V 0.36 TCGA-KQ-A41R-01 2 24207632 24207632 C T UBXN2A Missense_Mutation p.P172L 0.25 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 2 25467448 25467448 C A DNMT3A Missense_Mutation p.G543V 0.55 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 2 26531971 26531971 T C GPR113 3'Flank 0.28 TCGA-KQ-A41R-01 2 27599575 27599575 G A SNX17 Missense_Mutation p.E468K 0.63 deleterious(0.01) benign(0.275) TCGA-KQ-A41R-01 2 31457404 31457404 C T EHD3 5'UTR 0.55 TCGA-KQ-A41R-01 2 31621487 31621487 G A XDH Missense_Mutation p.R129W 0.55 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 2 32475393 32475393 G A NLRC4 Nonsense_Mutation p.Q514* 0.52 TCGA-KQ-A41R-01 2 37230703 37230703 C G HEATR5B Missense_Mutation p.E1678Q 0.10 tolerated(0.16) benign(0.061) TCGA-KQ-A41R-01 2 37232780 37232780 C T HEATR5B Missense_Mutation p.D1634N 0.33 tolerated(0.11) possibly_damaging(0.668) TCGA-KQ-A41R-01 2 37458859 37458859 T C NDUFAF7 Missense_Mutation p.L4P 0.21 deleterious_low_confidence(0.05) benign(0.006) TCGA-KQ-A41R-01 2 44566429 44566429 C T PREPL Missense_Mutation p.E276K 0.62 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41R-01 2 46986631 46986631 A T SOCS5 Missense_Mutation p.N321I 0.68 deleterious(0.03) benign(0.014) TCGA-KQ-A41R-01 2 54096536 54096536 A T PSME4 Missense_Mutation p.V1747E 0.10 tolerated(0.83) benign(0.002) TCGA-KQ-A41R-01 2 61473533 61473533 T A USP34 Silent p.G2158G 0.56 TCGA-KQ-A41R-01 2 62733335 62733335 C T TMEM17 5'UTR 0.31 TCGA-KQ-A41R-01 2 64779058 64779058 C T AFTPH Silent p.F150F 0.54 TCGA-KQ-A41R-01 2 65467076 65467076 G A ACTR2 Missense_Mutation p.V47M 0.67 tolerated(0.4) benign(0.186) TCGA-KQ-A41R-01 2 66664973 66664973 G A MEIS1 Silent p.L39L 0.23 TCGA-KQ-A41R-01 2 70315671 70315671 G A PCBP1 Missense_Mutation p.E266K 0.18 tolerated(0.46) benign(0.103) TCGA-KQ-A41R-01 2 70406666 70406666 G T C2orf42 Missense_Mutation p.S311Y 0.17 tolerated(0.11) benign(0.318) TCGA-KQ-A41R-01 2 71660293 71660293 A G ZNF638 Splice_Site p.X1918_splice 0.64 TCGA-KQ-A41R-01 2 71795102 71795102 G A DYSF Missense_Mutation p.G863S 0.14 tolerated(0.12) benign(0.05) TCGA-KQ-A41R-01 2 74688290 74688290 G A MOGS 3'UTR 0.46 TCGA-KQ-A41R-01 2 80808944 80808944 G A CTNNA2 Silent p.R669R 0.35 TCGA-KQ-A41R-01 2 85554517 85554517 C T TGOLN2 Missense_Mutation p.G113D 0.60 tolerated(1) probably_damaging(0.982) TCGA-KQ-A41R-01 2 85822917 85822917 G A RNF181 Missense_Mutation p.E11K 0.52 tolerated(0.13) benign(0.03) TCGA-KQ-A41R-01 2 86317019 86317019 C T POLR1A Missense_Mutation p.E156K 0.55 deleterious(0.03) benign(0.167) TCGA-KQ-A41R-01 2 86832432 86832432 C T RNF103 Missense_Mutation p.E198K 0.57 tolerated(0.16) possibly_damaging(0.63) TCGA-KQ-A41R-01 2 88895046 88895046 C T EIF2AK3 Missense_Mutation p.V192I 0.56 tolerated(0.14) benign(0.009) TCGA-KQ-A41R-01 2 89185609 89185609 C G IGKV4-1 Missense_Mutation p.I101M 0.50 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41R-01 2 9028153 9028153 T C MBOAT2 Missense_Mutation p.H149R 0.59 deleterious(0.02) benign(0.248) TCGA-KQ-A41R-01 2 97216866 97216866 G A ARID5A Missense_Mutation p.A201T 0.12 tolerated(0.59) benign(0) TCGA-KQ-A41R-01 3 101447707 101447707 G A CEP97 Missense_Mutation p.A125T 0.10 tolerated(0.14) benign(0.099) TCGA-KQ-A41R-01 3 112289392 112289392 C G SLC35A5 Missense_Mutation p.Q79E 0.25 tolerated(1) benign(0.102) TCGA-KQ-A41R-01 3 123667914 123667914 C T CCDC14 Missense_Mutation p.D147N 0.60 tolerated(0.09) possibly_damaging(0.728) TCGA-KQ-A41R-01 3 125650572 125650572 G A ALG1L Silent p.L62L 0.58 TCGA-KQ-A41R-01 3 126748785 126748785 C T PLXNA1 Silent p.L1647L 0.44 TCGA-KQ-A41R-01 3 129695748 129695748 C T TRH Missense_Mutation p.R140C 0.19 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 3 130881261 130881272 GATCCACCTGCA - NEK11 In_Frame_Del p.I325_Q328del 0.30 TCGA-KQ-A41R-01 3 1320141 1320141 C T CNTN6 Nonsense_Mutation p.R135* 0.32 TCGA-KQ-A41R-01 3 139065764 139065764 G A MRPS22 Missense_Mutation p.E73K 0.53 tolerated(0.16) benign(0.05) TCGA-KQ-A41R-01 3 142119361 142119361 A C XRN1 Missense_Mutation p.L711R 0.38 deleterious(0) probably_damaging(0.949) TCGA-KQ-A41R-01 3 148759279 148759279 G T HLTF Missense_Mutation p.Q792K 0.50 tolerated(0.56) benign(0.163) TCGA-KQ-A41R-01 3 149089459 149089459 C T TM4SF1 Intron 0.19 TCGA-KQ-A41R-01 3 155203500 155203500 C G PLCH1 Splice_Site p.X882_splice 0.48 TCGA-KQ-A41R-01 3 157188156 157188156 C T VEPH1 Missense_Mutation p.E101K 0.43 deleterious(0.04) possibly_damaging(0.509) TCGA-KQ-A41R-01 3 158991547 158991547 T G IQCJ-SCHIP1 Intron 0.50 TCGA-KQ-A41R-01 3 160395613 160395613 C G ARL14 Missense_Mutation p.T160R 0.16 deleterious(0.01) possibly_damaging(0.801) TCGA-KQ-A41R-01 3 160395652 160395652 G A ARL14 Missense_Mutation p.G173E 0.38 tolerated(1) benign(0.006) TCGA-KQ-A41R-01 3 168813013 168813013 G A MECOM Missense_Mutation p.S834L 0.44 deleterious(0) possibly_damaging(0.76) TCGA-KQ-A41R-01 3 169540615 169540615 G C LRRIQ4 Silent p.L302L 0.34 TCGA-KQ-A41R-01 3 170819274 170819274 T C TNIK Missense_Mutation p.D852G 0.40 deleterious(0.05) possibly_damaging(0.827) TCGA-KQ-A41R-01 3 172538170 172538170 C T ECT2 3'UTR 0.33 TCGA-KQ-A41R-01 3 17469955 17469955 A C TBC1D5 Missense_Mutation p.F52V 0.59 tolerated(0.11) benign(0.41) TCGA-KQ-A41R-01 3 183217519 183217519 C T KLHL6 Missense_Mutation p.E336K 0.38 tolerated(1) possibly_damaging(0.555) TCGA-KQ-A41R-01 3 184040744 184040744 T G EIF4G1 Splice_Site p.X650_splice 0.48 TCGA-KQ-A41R-01 3 184079326 184079326 C A CLCN2 5'UTR 0.32 TCGA-KQ-A41R-01 3 184299147 184299147 G C EPHB3 Missense_Mutation p.V947L 0.06 tolerated(0.58) benign(0.004) TCGA-KQ-A41R-01 3 18462271 18462271 C T SATB1 Silent p.L63L 0.20 TCGA-KQ-A41R-01 3 184675243 184675243 C T VPS8 Silent p.F1039F 0.09 TCGA-KQ-A41R-01 3 184971826 184971826 G A EHHADH 5'UTR 0.56 TCGA-KQ-A41R-01 3 193855810 193855810 G A HES1 Missense_Mutation p.E211K 0.55 tolerated(0.85) benign(0.142) TCGA-KQ-A41R-01 3 194407685 194407685 G A FAM43A Missense_Mutation p.E44K 0.43 deleterious(0.04) probably_damaging(0.992) TCGA-KQ-A41R-01 3 19975099 19975099 G T EFHB Missense_Mutation p.Q138K 0.08 tolerated_low_confidence(0.06) benign(0.437) TCGA-KQ-A41R-01 3 3170697 3170697 G A TRNT1 Splice_Site 0.06 TCGA-KQ-A41R-01 3 33156037 33156037 C T CRTAP Silent p.F156F 0.85 TCGA-KQ-A41R-01 3 37340817 37340817 G C GOLGA4 Missense_Mutation p.Q369H 0.08 probably_damaging(0.985) TCGA-KQ-A41R-01 3 38035413 38035413 G A VILL Missense_Mutation p.E29K 0.06 tolerated(0.39) possibly_damaging(0.523) TCGA-KQ-A41R-01 3 38135241 38135241 G C DLEC1 Silent p.L634L 0.08 TCGA-KQ-A41R-01 3 42727475 42727475 C T KLHL40 Missense_Mutation p.S122F 0.31 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41R-01 3 4776883 4776883 G A ITPR1 Missense_Mutation p.E1782K 0.63 tolerated(0.77) benign(0.146) TCGA-KQ-A41R-01 3 48636434 48636434 C G UQCRC1 3'Flank 0.33 TCGA-KQ-A41R-01 3 48936180 48936180 G C SLC25A20 Silent p.A16A 0.42 TCGA-KQ-A41R-01 3 49163817 49163817 G A LAMB2 Missense_Mutation p.P711L 0.12 tolerated(0.15) benign(0.046) TCGA-KQ-A41R-01 3 49163823 49163823 G A LAMB2 Missense_Mutation p.S709F 0.14 deleterious(0) benign(0.1) TCGA-KQ-A41R-01 3 49755909 49755909 C T AMIGO3 Silent p.A330A 0.28 TCGA-KQ-A41R-01 3 50392759 50392759 C T TMEM115 3'UTR 0.46 TCGA-KQ-A41R-01 3 52556410 52556410 C T STAB1 Missense_Mutation p.S2177L 0.10 tolerated(0.56) benign(0.001) TCGA-KQ-A41R-01 3 53842752 53842752 C G CACNA1D Missense_Mutation p.I1962M 0.17 deleterious_low_confidence(0.02) benign(0.002) TCGA-KQ-A41R-01 3 53894240 53894240 C T IL17RB Silent p.L311L 0.45 TCGA-KQ-A41R-01 3 62477079 62477079 C T CADPS Silent p.L987L 0.50 TCGA-KQ-A41R-01 3 67548585 67548585 C T SUCLG2 Missense_Mutation p.G298R 0.26 tolerated(0.06) possibly_damaging(0.672) TCGA-KQ-A41R-01 3 71008263 71008263 C A FOXP1 3'Flank 0.36 TCGA-KQ-A41R-01 3 71101729 71101729 G A FOXP1 Nonsense_Mutation p.Q159* 0.61 TCGA-KQ-A41R-01 3 73111736 73111736 C T EBLN2 Silent p.F168F 0.28 TCGA-KQ-A41R-01 3 9512551 9512551 G A SETD5 Missense_Mutation p.G1045S 0.21 tolerated(0.41) benign(0.001) TCGA-KQ-A41R-01 4 100009868 100009868 C T ADH5 5'UTR 0.63 TCGA-KQ-A41R-01 4 104000897 104000897 C G BDH2 Missense_Mutation p.G234R 0.53 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 4 104082372 104082372 C T CENPE Missense_Mutation p.D668N 0.27 probably_damaging(0.983) TCGA-KQ-A41R-01 4 104640410 104640410 G A TACR3 Silent p.V141V 0.38 TCGA-KQ-A41R-01 4 110222999 110222999 G C COL25A1 Silent p.L59L 0.15 TCGA-KQ-A41R-01 4 113436354 113436354 G A NEUROG2 Missense_Mutation p.A93V 0.66 deleterious(0.03) benign(0.028) TCGA-KQ-A41R-01 4 114294533 114294533 C T ANK2 Silent p.N3929N 0.57 TCGA-KQ-A41R-01 4 119475254 119475254 G A CEP170P1 RNA 0.24 TCGA-KQ-A41R-01 4 124235064 124235064 G A SPATA5 Missense_Mutation p.A843T 0.06 deleterious(0) probably_damaging(0.993) TCGA-KQ-A41R-01 4 125600039 125600039 C T ANKRD50 Silent p.L178L 0.63 TCGA-KQ-A41R-01 4 126241050 126241050 G A FAT4 Missense_Mutation p.D1162N 0.61 probably_damaging(1) TCGA-KQ-A41R-01 4 126373722 126373722 C T FAT4 Silent p.L3851L 0.66 TCGA-KQ-A41R-01 4 128608933 128608933 C G INTU Missense_Mutation p.P454A 0.06 tolerated(0.06) benign(0.087) TCGA-KQ-A41R-01 4 140394010 140394010 T C RAB33B Silent p.D140D 0.22 TCGA-KQ-A41R-01 4 155219685 155219685 A G DCHS2 Silent p.N1472N 0.40 TCGA-KQ-A41R-01 4 155507779 155507779 C T FGA Missense_Mutation p.E268K 0.04 tolerated(0.71) benign(0.292) TCGA-KQ-A41R-01 4 155748949 155748949 G C RBM46 Intron 0.32 TCGA-KQ-A41R-01 4 156828926 156828926 G A TDO2 Silent p.E95E 0.34 TCGA-KQ-A41R-01 4 15850356 15850356 G A CD38 3'UTR 0.62 TCGA-KQ-A41R-01 4 159092430 159092430 C T FAM198B Missense_Mutation p.R33K 0.45 tolerated(0.31) benign(0.14) TCGA-KQ-A41R-01 4 162463813 162463813 G A FSTL5 Nonsense_Mutation p.Q350* 0.51 TCGA-KQ-A41R-01 4 166024206 166024206 G A TMEM192 Silent p.L24L 0.31 TCGA-KQ-A41R-01 4 166033944 166033944 G A TMEM192 5'UTR 0.25 TCGA-KQ-A41R-01 4 176556088 176556088 G A GPM6A Missense_Mutation p.R269C 0.49 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41R-01 4 177608414 177608414 A G VEGFC Missense_Mutation p.C358R 0.54 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 4 177608626 177608626 T G VEGFC Missense_Mutation p.D287A 0.05 deleterious(0.01) possibly_damaging(0.818) TCGA-KQ-A41R-01 4 183601696 183601696 C T TENM3 Missense_Mutation p.A547V 0.16 tolerated(0.09) possibly_damaging(0.739) TCGA-KQ-A41R-01 4 185652115 185652115 G C CENPU Missense_Mutation p.R19G 0.07 tolerated(0.28) unknown(0) TCGA-KQ-A41R-01 4 186318341 186318341 C T ANKRD37 Missense_Mutation p.S22L 0.49 deleterious(0.01) possibly_damaging(0.638) TCGA-KQ-A41R-01 4 25256724 25256724 C G PI4K2B Missense_Mutation p.P154R 0.32 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 4 37591747 37591747 T C C4orf19 Missense_Mutation p.Y24H 0.41 deleterious(0) probably_damaging(0.995) TCGA-KQ-A41R-01 4 39482031 39482031 C T LIAS 3'Flank 0.21 TCGA-KQ-A41R-01 4 40045080 40045080 G A RP11-333E13.4 RNA 0.58 TCGA-KQ-A41R-01 4 40752693 40752693 G A NSUN7 5'UTR 0.53 TCGA-KQ-A41R-01 4 41605908 41605908 A C LIMCH1 Silent p.R121R 0.30 TCGA-KQ-A41R-01 4 41951361 41951361 T C TMEM33 Silent p.F191F 0.34 TCGA-KQ-A41R-01 4 54440201 54440201 C T LNX1 5'UTR 0.29 TCGA-KQ-A41R-01 4 6578364 6578364 C T MAN2B2 Silent p.R66R 0.36 TCGA-KQ-A41R-01 4 69962531 69962531 C T UGT2B7 Missense_Mutation p.S98L 0.26 tolerated(0.58) benign(0.003) TCGA-KQ-A41R-01 4 70066216 70066216 A G UGT2B11 Missense_Mutation p.F511S 0.37 tolerated(0.07) benign(0.079) TCGA-KQ-A41R-01 4 74306403 74306403 G C AFP Missense_Mutation p.E119Q 0.14 tolerated(0.06) benign(0.091) TCGA-KQ-A41R-01 4 76580328 76580328 C T G3BP2 Silent p.K216K 0.30 TCGA-KQ-A41R-01 4 77305783 77305783 C T CCDC158 Silent p.L108L 0.49 TCGA-KQ-A41R-01 4 83351878 83351878 G A ENOPH1 5'UTR 0.33 TCGA-KQ-A41R-01 4 85414558 85414558 G C NKX6-1 Missense_Mutation p.L330V 0.15 deleterious(0) unknown(0) TCGA-KQ-A41R-01 4 94344018 94344018 C G GRID2 Missense_Mutation p.L482V 0.23 deleterious(0) possibly_damaging(0.824) TCGA-KQ-A41R-01 4 956270 956270 C T DGKQ Missense_Mutation p.E723K 0.26 tolerated(0.06) benign(0.007) TCGA-KQ-A41R-01 5 102894688 102894688 G C NUDT12 Missense_Mutation p.L230V 0.57 tolerated(0.45) possibly_damaging(0.531) TCGA-KQ-A41R-01 5 112196995 112196995 G A SRP19 5'UTR 0.64 TCGA-KQ-A41R-01 5 114879251 114879251 C T FEM1C 5'UTR 0.33 TCGA-KQ-A41R-01 5 115298698 115298698 T G AQPEP Silent p.T128T 0.19 TCGA-KQ-A41R-01 5 1268660 1268660 G C TERT Missense_Mutation p.L853V 0.59 deleterious(0.05) benign(0.344) TCGA-KQ-A41R-01 5 133451530 133451530 A T TCF7 Intron 0.62 TCGA-KQ-A41R-01 5 133481773 133481773 G A TCF7 Intron 0.17 TCGA-KQ-A41R-01 5 137717271 137717271 C T KDM3B Nonsense_Mutation p.Q258* 0.53 TCGA-KQ-A41R-01 5 137895693 137895693 G A HSPA9 Nonsense_Mutation p.Q424* 0.57 TCGA-KQ-A41R-01 5 139494639 139494639 C G PURA Silent p.A291A 0.60 TCGA-KQ-A41R-01 5 140012504 140012504 G C CD14 Missense_Mutation p.P22R 0.29 tolerated(0.2) benign(0.086) TCGA-KQ-A41R-01 5 140516238 140516238 C G PCDHB5 Missense_Mutation p.L408V 0.22 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-KQ-A41R-01 5 140751881 140751881 G A PCDHGB3 Silent p.Q640Q 0.68 TCGA-KQ-A41R-01 5 140767815 140767815 G A PCDHGB4 Missense_Mutation p.E122K 0.22 tolerated(0.34) benign(0.014) TCGA-KQ-A41R-01 5 140769008 140769008 C A PCDHGB4 Missense_Mutation p.D519E 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-KQ-A41R-01 5 141008190 141008190 G T HDAC3 Silent p.V209V 0.28 TCGA-KQ-A41R-01 5 141244601 141244601 C T PCDH1 Missense_Mutation p.C432Y 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-KQ-A41R-01 5 14291046 14291046 G A TRIO Silent p.R254R 0.26 TCGA-KQ-A41R-01 5 145435660 145435660 G A SH3RF2 Missense_Mutation p.R480H 0.05 tolerated(0.19) benign(0.009) TCGA-KQ-A41R-01 5 145895210 145895210 G A GPR151 Missense_Mutation p.S156L 0.20 tolerated(0.22) benign(0.015) TCGA-KQ-A41R-01 5 147470785 147470785 T A SPINK5 Silent p.A220A 0.44 TCGA-KQ-A41R-01 5 148206979 148206979 G A ADRB2 Silent p.T195T 0.25 TCGA-KQ-A41R-01 5 150095149 150095149 G A DCTN4 Nonsense_Mutation p.Q390* 0.64 TCGA-KQ-A41R-01 5 150275799 150275799 G A ZNF300 Silent p.F350F 0.22 TCGA-KQ-A41R-01 5 150924367 150924367 A T FAT2 Nonsense_Mutation p.Y2107* 0.63 TCGA-KQ-A41R-01 5 156750969 156750969 A G CYFIP2 Missense_Mutation p.D545G 0.45 deleterious(0) benign(0.392) TCGA-KQ-A41R-01 5 172359514 172359514 C T ERGIC1 Missense_Mutation p.S206F 0.28 deleterious(0.03) possibly_damaging(0.706) TCGA-KQ-A41R-01 5 176666836 176666836 C G NSD1 Silent p.P1424P 0.16 TCGA-KQ-A41R-01 5 176722164 176722164 T G NSD1 Missense_Mutation p.S2599A 0.26 deleterious_low_confidence(0) benign(0.012) TCGA-KQ-A41R-01 5 179291116 179291116 C T TBC1D9B Missense_Mutation p.E1029K 0.53 deleterious(0.01) possibly_damaging(0.881) TCGA-KQ-A41R-01 5 195415 195415 G T LRRC14B Missense_Mutation p.A498S 0.06 tolerated(0.98) benign(0.039) TCGA-KQ-A41R-01 5 23527753 23527753 G A PRDM9 Silent p.R852R 0.58 TCGA-KQ-A41R-01 5 32400210 32400210 C T ZFR Missense_Mutation p.E539K 0.65 tolerated(0.35) unknown(0) TCGA-KQ-A41R-01 5 40841567 40841567 C T CARD6 Missense_Mutation p.S28F 0.34 deleterious(0) probably_damaging(0.984) TCGA-KQ-A41R-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.26 tolerated(0.25) benign(0.064) TCGA-KQ-A41R-01 5 44305179 44305179 C A FGF10 Missense_Mutation p.G182V 0.08 tolerated(0.43) benign(0.132) TCGA-KQ-A41R-01 5 52096867 52096867 G A PELO Silent p.V213V 0.48 TCGA-KQ-A41R-01 5 54923765 54923765 C T SLC38A9 Missense_Mutation p.G492R 0.53 tolerated(0.05) probably_damaging(0.987) TCGA-KQ-A41R-01 5 64865504 64865504 C T PPWD1 Silent p.F115F 0.72 TCGA-KQ-A41R-01 5 74021918 74021918 T C GFM2 Missense_Mutation p.H587R 0.45 deleterious(0.02) probably_damaging(1) TCGA-KQ-A41R-01 5 76785373 76785373 C T WDR41 Missense_Mutation p.E26K 0.29 deleterious(0.01) probably_damaging(0.915) TCGA-KQ-A41R-01 5 78280821 78280821 T C ARSB Missense_Mutation p.N84S 0.42 tolerated(0.07) possibly_damaging(0.644) TCGA-KQ-A41R-01 5 79030823 79030823 G T CMYA5 Missense_Mutation p.V2079L 0.50 benign(0.015) TCGA-KQ-A41R-01 5 80169003 80169003 A T MSH3 Missense_Mutation p.S1067C 0.05 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 5 82649131 82649131 G A XRCC4 3'UTR 0.21 TCGA-KQ-A41R-01 5 86627281 86627281 C T RASA1 Missense_Mutation p.S219L 0.28 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41R-01 5 90144581 90144581 C G GPR98 Missense_Mutation p.T5716S 0.16 possibly_damaging(0.636) TCGA-KQ-A41R-01 5 901453 901453 C G TRIP13 Intron 0.59 TCGA-KQ-A41R-01 6 105563564 105563564 G C BVES Missense_Mutation p.L319V 0.46 tolerated(0.17) benign(0.248) TCGA-KQ-A41R-01 6 108395523 108395523 G A OSTM1 Silent p.L111L 0.32 TCGA-KQ-A41R-01 6 109762653 109762653 G A SMPD2 Silent p.E48E 0.22 TCGA-KQ-A41R-01 6 112479933 112479933 C A LAMA4 Splice_Site p.X606_splice 0.50 TCGA-KQ-A41R-01 6 117589356 117589356 T C VGLL2 Silent p.Y31Y 0.28 TCGA-KQ-A41R-01 6 122733610 122733610 G A HSF2 Silent p.V62V 0.45 TCGA-KQ-A41R-01 6 127911266 127911266 G C C6orf58 Missense_Mutation p.E237Q 0.09 tolerated(0.11) possibly_damaging(0.702) TCGA-KQ-A41R-01 6 129573437 129573437 T C LAMA2 Missense_Mutation p.F698S 0.52 deleterious(0.05) possibly_damaging(0.533) TCGA-KQ-A41R-01 6 129837332 129837332 C G LAMA2 Intron 0.22 TCGA-KQ-A41R-01 6 135287508 135287508 G A HBS1L Missense_Mutation p.R668C 0.23 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 6 136599286 136599286 C A BCLAF1 Missense_Mutation p.A245S 0.29 tolerated(0.37) possibly_damaging(0.567) TCGA-KQ-A41R-01 6 136888833 136888833 C T MAP3K5 Missense_Mutation p.D1233N 0.47 tolerated(0.12) benign(0) TCGA-KQ-A41R-01 6 143092026 143092026 C G HIVEP2 Missense_Mutation p.G1284R 0.50 tolerated(0.19) possibly_damaging(0.717) TCGA-KQ-A41R-01 6 150211199 150211199 C T RAET1E Silent p.L56L 0.34 TCGA-KQ-A41R-01 6 159687205 159687224 TATCGAAAGTTCGTGGGAGT - FNDC1 Frame_Shift_Del p.Y1792Cfs*4 0.37 TCGA-KQ-A41R-01 6 169637778 169637778 G - THBS2 Frame_Shift_Del p.C415Afs*13 0.46 TCGA-KQ-A41R-01 6 24205331 24205331 C T DCDC2 Splice_Site p.X308_splice 0.12 TCGA-KQ-A41R-01 6 26033547 26033547 G A HIST1H2AB Silent p.L84L 0.05 TCGA-KQ-A41R-01 6 26189170 26189170 C A HIST1H4D Missense_Mutation p.K45N 0.16 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-KQ-A41R-01 6 26252107 26252107 G A HIST1H2BH Missense_Mutation p.E77K 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-KQ-A41R-01 6 27792148 27792148 C T HIST1H4J Silent p.V82V 0.12 TCGA-KQ-A41R-01 6 304648 304648 C T DUSP22 Silent p.I14I 0.15 TCGA-KQ-A41R-01 6 30522594 30522594 T A GNL1 Missense_Mutation p.I159F 0.32 deleterious(0.01) possibly_damaging(0.818) TCGA-KQ-A41R-01 6 30656615 30656615 C T NRM Silent p.L204L 0.48 TCGA-KQ-A41R-01 6 31583019 31583019 G A AIF1 5'UTR 0.50 TCGA-KQ-A41R-01 6 31685375 31685375 C T LY6G6D Missense_Mutation p.H66Y 0.58 deleterious(0.01) benign(0.291) TCGA-KQ-A41R-01 6 31694942 31694942 A C DDAH2 3'UTR 0.28 TCGA-KQ-A41R-01 6 31704045 31704045 G A CLIC1 Silent p.F11F 0.42 TCGA-KQ-A41R-01 6 32147490 32147490 G A RNF5 Silent p.E74E 0.30 TCGA-KQ-A41R-01 6 32634316 32634316 C T HLA-DQB1 Silent p.A23A 0.78 TCGA-KQ-A41R-01 6 33281010 33281010 G A TAPBP Silent p.L151L 0.24 TCGA-KQ-A41R-01 6 36442577 36442577 G T KCTD20 Missense_Mutation p.D58Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-KQ-A41R-01 6 36976744 36976744 T C FGD2 Missense_Mutation p.V68A 0.12 tolerated_low_confidence(0.11) benign(0.043) TCGA-KQ-A41R-01 6 37429868 37429868 A T CMTR1 Missense_Mutation p.N439Y 0.43 deleterious(0) probably_damaging(0.984) TCGA-KQ-A41R-01 6 4130797 4130797 G A ECI2 Intron 0.28 TCGA-KQ-A41R-01 6 41753194 41753194 C T PRICKLE4 Silent p.L166L 0.42 TCGA-KQ-A41R-01 6 41753197 41753197 C T PRICKLE4 Silent p.I167I 0.41 TCGA-KQ-A41R-01 6 41903769 41903769 G C CCND3 Missense_Mutation p.S263C 0.40 tolerated(0.05) benign(0.273) TCGA-KQ-A41R-01 6 42689614 42689614 C A PRPH2 Missense_Mutation p.K153N 0.30 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 6 43020305 43020305 G T CUL7 Silent p.I126I 0.08 TCGA-KQ-A41R-01 6 43141802 43141802 C G SRF Missense_Mutation p.T244R 0.25 deleterious(0.02) possibly_damaging(0.507) TCGA-KQ-A41R-01 6 46656864 46656864 G A TDRD6 Silent p.E333E 0.45 TCGA-KQ-A41R-01 6 47591933 47591933 G A CD2AP Silent p.E630E 0.57 TCGA-KQ-A41R-01 6 56035587 56035587 C T COL21A1 Missense_Mutation p.D296N 0.21 deleterious(0.01) probably_damaging(1) TCGA-KQ-A41R-01 6 56470602 56470602 C T DST Intron 0.24 TCGA-KQ-A41R-01 6 56481651 56481651 C T DST Intron 0.16 TCGA-KQ-A41R-01 6 56483338 56483338 C G DST Intron 0.22 TCGA-KQ-A41R-01 6 56484190 56484190 C T DST Intron 0.17 TCGA-KQ-A41R-01 6 56492865 56492865 G A DST Nonsense_Mutation p.Q987* 0.21 TCGA-KQ-A41R-01 6 56496099 56496099 G A DST Missense_Mutation p.S814F 0.14 possibly_damaging(0.776) TCGA-KQ-A41R-01 6 56496823 56496823 G C DST Nonsense_Mutation p.S737* 0.19 TCGA-KQ-A41R-01 6 56505346 56505346 G A DST Silent p.Y158Y 0.59 TCGA-KQ-A41R-01 6 71665784 71665784 C T B3GAT2 Missense_Mutation p.E117K 0.22 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41R-01 6 7229536 7229536 C T RREB1 Nonsense_Mutation p.Q402* 0.13 TCGA-KQ-A41R-01 6 7570715 7570715 C T DSP Silent p.L540L 0.65 TCGA-KQ-A41R-01 6 7727455 7727455 C T BMP6 Silent p.L89L 0.90 TCGA-KQ-A41R-01 6 90428247 90428247 C T MDN1 Missense_Mutation p.E2141K 0.34 benign(0.336) TCGA-KQ-A41R-01 6 90428705 90428705 C T MDN1 Silent p.P2034P 0.25 TCGA-KQ-A41R-01 7 100192154 100192154 C G FBXO24 Silent p.L352L 0.45 TCGA-KQ-A41R-01 7 100210391 100210391 G A MOSPD3 5'UTR 0.50 TCGA-KQ-A41R-01 7 102938036 102938036 C T PMPCB Intron 0.58 TCGA-KQ-A41R-01 7 103126790 103126790 G C RELN Silent p.T3279T 0.29 TCGA-KQ-A41R-01 7 103130216 103130216 T C RELN Missense_Mutation p.I3246V 0.32 tolerated(1) benign(0.001) TCGA-KQ-A41R-01 7 107423793 107423793 G A SLC26A3 Nonsense_Mutation p.Q326* 0.18 TCGA-KQ-A41R-01 7 107638856 107638856 C T LAMB1 Missense_Mutation p.V99M 0.43 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41R-01 7 1097680 1097680 G A GPR146 Missense_Mutation p.E177K 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-KQ-A41R-01 7 112112273 112112273 G C IFRD1 Splice_Site p.X348_splice 0.07 TCGA-KQ-A41R-01 7 117025789 117025789 C T ASZ1 Missense_Mutation p.G172E 0.37 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 7 117351649 117351649 G C CTTNBP2 Nonsense_Mutation p.S1645* 0.42 TCGA-KQ-A41R-01 7 121652413 121652413 C G PTPRZ1 Missense_Mutation p.H1105D 0.47 deleterious_low_confidence(0.01) benign(0.04) TCGA-KQ-A41R-01 7 121699834 121699834 C T PTPRZ1 Silent p.F2233F 0.43 TCGA-KQ-A41R-01 7 121943331 121943331 A T FEZF1 Missense_Mutation p.M279K 0.05 tolerated(0.17) possibly_damaging(0.492) TCGA-KQ-A41R-01 7 129125417 129125417 C G STRIP2 Intron 0.11 TCGA-KQ-A41R-01 7 150324815 150324815 C T GIMAP6 Missense_Mutation p.D291N 0.35 tolerated_low_confidence(0.66) benign(0) TCGA-KQ-A41R-01 7 150820943 150820943 C T AGAP3 Silent p.I397I 0.15 TCGA-KQ-A41R-01 7 151893024 151893024 G A KMT2C Missense_Mutation p.S1449L 0.41 probably_damaging(0.987) TCGA-KQ-A41R-01 7 15601565 15601565 C G AGMO 5'UTR 0.53 TCGA-KQ-A41R-01 7 157151265 157151265 A C DNAJB6 5'UTR 0.14 TCGA-KQ-A41R-01 7 158443566 158443581 CAGAGTAGAAAGTACA - NCAPG2 Frame_Shift_Del p.V1007Sfs*8 0.42 TCGA-KQ-A41R-01 7 17370446 17370446 C T AHR Missense_Mutation p.P214L 0.32 deleterious(0.03) benign(0.012) TCGA-KQ-A41R-01 7 24708260 24708260 A G MPP6 Silent p.R365R 0.26 TCGA-KQ-A41R-01 7 24905816 24905816 A G OSBPL3 Missense_Mutation p.L141P 0.20 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 7 27194620 27194620 C T HOXA7 Missense_Mutation p.E201K 0.17 tolerated(0.6) unknown(0) TCGA-KQ-A41R-01 7 31682550 31682550 G A CCDC129 Missense_Mutation p.M548I 0.18 deleterious(0.04) benign(0.015) TCGA-KQ-A41R-01 7 33057159 33057159 G C NT5C3A Missense_Mutation p.F200L 0.33 tolerated(0.59) benign(0.007) TCGA-KQ-A41R-01 7 37956083 37956083 C T SFRP4 Silent p.V19V 0.07 TCGA-KQ-A41R-01 7 44620777 44620777 T C TMED4 Missense_Mutation p.K150R 0.26 deleterious(0.01) benign(0.223) TCGA-KQ-A41R-01 7 45217037 45217037 T A RAMP3 Missense_Mutation p.I63N 0.51 deleterious(0) probably_damaging(0.938) TCGA-KQ-A41R-01 7 47832234 47832234 T C PKD1L1 Silent p.Q2839Q 0.28 TCGA-KQ-A41R-01 7 47937689 47937689 C T PKD1L1 Missense_Mutation p.E723K 0.59 tolerated(0.39) benign(0.033) TCGA-KQ-A41R-01 7 48269484 48269484 C T ABCA13 Missense_Mutation p.S232F 0.20 benign(0.179) TCGA-KQ-A41R-01 7 50800055 50800055 C T GRB10 5'Flank 0.09 TCGA-KQ-A41R-01 7 56142304 56142304 G A SUMF2 Missense_Mutation p.R156Q 0.26 tolerated(0.07) benign(0.026) TCGA-KQ-A41R-01 7 57529518 57529518 C G ZNF716 Missense_Mutation p.L451V 0.56 deleterious(0.02) benign(0.034) TCGA-KQ-A41R-01 7 6476042 6476042 G A DAGLB Nonsense_Mutation p.Q124* 0.60 TCGA-KQ-A41R-01 7 70236588 70236588 C T AUTS2 Silent p.P596P 0.08 TCGA-KQ-A41R-01 7 74193759 74193759 C T NCF1 Missense_Mutation p.T129M 0.20 deleterious(0.03) benign(0.271) TCGA-KQ-A41R-01 7 76062301 76062301 G A ZP3 Silent p.T163T 0.24 TCGA-KQ-A41R-01 7 76071267 76071267 T C ZP3 Missense_Mutation p.L390P 0.36 deleterious(0) probably_damaging(0.915) TCGA-KQ-A41R-01 7 76631494 76631516 CATGGAGAAGCTGTCCGCAGCGT - UPK3B Intron 0.38 TCGA-KQ-A41R-01 7 80458004 80458004 T C SEMA3C Missense_Mutation p.Y54C 0.12 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 7 82581249 82581249 T A PCLO Missense_Mutation p.Y3007F 0.06 unknown(0) TCGA-KQ-A41R-01 7 83606467 83606467 G A SEMA3A Silent p.H566H 0.24 TCGA-KQ-A41R-01 7 88389255 88389255 G A ZNF804B 5'UTR 0.31 TCGA-KQ-A41R-01 7 90894946 90894946 C A FZD1 Missense_Mutation p.P251T 0.33 tolerated(0.11) benign(0.01) TCGA-KQ-A41R-01 7 98506427 98506427 G A TRRAP Missense_Mutation p.A398T 0.56 benign(0.005) TCGA-KQ-A41R-01 8 100025993 100025993 G A VPS13B 5'UTR 0.10 TCGA-KQ-A41R-01 8 105263829 105263829 G C RIMS2 Splice_Site p.X1278_splice 0.32 TCGA-KQ-A41R-01 8 105436548 105436548 G A DPYS Missense_Mutation p.L388F 0.30 tolerated(0.1) benign(0.077) TCGA-KQ-A41R-01 8 110305636 110305636 C T NUDCD1 Missense_Mutation p.D193N 0.81 tolerated(0.12) benign(0.005) TCGA-KQ-A41R-01 8 110567076 110567076 A G EBAG9 Missense_Mutation p.Y94C 0.08 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41R-01 8 110655151 110655151 C G SYBU Missense_Mutation p.R12T 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-KQ-A41R-01 8 116616479 116616479 T C TRPS1 Missense_Mutation p.T573A 0.14 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-KQ-A41R-01 8 116616589 116616589 T C TRPS1 Missense_Mutation p.Y536C 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KQ-A41R-01 8 118147611 118147611 C G SLC30A8 Silent p.A15A 0.09 TCGA-KQ-A41R-01 8 124266728 124266728 G C ZHX1 Missense_Mutation p.Q487E 0.18 deleterious(0.01) benign(0.369) TCGA-KQ-A41R-01 8 124348769 124348769 G A ATAD2 Missense_Mutation p.P1019S 0.28 tolerated(0.39) possibly_damaging(0.825) TCGA-KQ-A41R-01 8 124553195 124553195 G A FBXO32 Silent p.D20D 0.34 TCGA-KQ-A41R-01 8 124812011 124812011 G C FAM91A1 Splice_Site p.X566_splice 0.13 TCGA-KQ-A41R-01 8 126379201 126379201 C T NSMCE2 3'UTR 0.09 TCGA-KQ-A41R-01 8 135521905 135521905 G A ZFAT Missense_Mutation p.S1150L 0.35 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41R-01 8 141554353 141554353 G A AGO2 Missense_Mutation p.H600Y 0.41 deleterious(0) benign(0.33) TCGA-KQ-A41R-01 8 141774360 141774360 C T PTK2 Missense_Mutation p.E403K 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-KQ-A41R-01 8 144464832 144464832 C T RHPN1 3'UTR 0.89 TCGA-KQ-A41R-01 8 144874978 144874978 C T SCRIB Silent p.K1359K 0.88 TCGA-KQ-A41R-01 8 145690215 145690215 G A CYHR1 Missense_Mutation p.H24Y 0.20 tolerated_low_confidence(0.13) benign(0.403) TCGA-KQ-A41R-01 8 17206467 17206467 T C MTMR7 Missense_Mutation p.N198D 0.55 deleterious(0.01) benign(0.081) TCGA-KQ-A41R-01 8 1728476 1728476 C T CLN8 Missense_Mutation p.H202Y 0.53 deleterious(0) probably_damaging(0.983) TCGA-KQ-A41R-01 8 18413806 18413806 G A PSD3 Silent p.A947A 0.30 TCGA-KQ-A41R-01 8 1905267 1905267 G A ARHGEF10 Silent p.L1291L 0.62 TCGA-KQ-A41R-01 8 22064894 22064894 A G BMP1 Missense_Mutation p.K814E 0.34 tolerated(0.42) benign(0.102) TCGA-KQ-A41R-01 8 22212998 22212998 G A PIWIL2 Missense_Mutation p.E968K 0.61 deleterious(0) benign(0.319) TCGA-KQ-A41R-01 8 25203031 25203031 C T DOCK5 Silent p.L886L 0.56 TCGA-KQ-A41R-01 8 27456125 27456125 C T CLU Missense_Mutation p.V398I 0.41 tolerated(0.19) benign(0.012) TCGA-KQ-A41R-01 8 38869206 38869206 A G ADAM9 Silent p.K75K 0.56 TCGA-KQ-A41R-01 8 39780125 39780125 C G IDO1 Missense_Mutation p.F164L 0.26 tolerated(0.07) probably_damaging(0.915) TCGA-KQ-A41R-01 8 48647932 48647932 G A SPIDR Missense_Mutation p.V890I 0.58 tolerated(1) benign(0.002) TCGA-KQ-A41R-01 8 51664659 51664659 G T SNTG1 Missense_Mutation p.Q461H 0.17 tolerated(0.13) possibly_damaging(0.738) TCGA-KQ-A41R-01 8 54866819 54866819 G A RGS20 Silent p.E309E 0.65 TCGA-KQ-A41R-01 8 55537811 55537811 G C RP1 Missense_Mutation p.V457L 0.17 deleterious(0.04) benign(0.015) TCGA-KQ-A41R-01 8 61754431 61754431 G A CHD7 Missense_Mutation p.R1557K 0.26 probably_damaging(0.965) TCGA-KQ-A41R-01 8 6357409 6357409 G A MCPH1 Missense_Mutation p.E725K 0.58 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 8 69069586 69069586 A - PREX2 Frame_Shift_Del p.R1421Efs*13 0.12 TCGA-KQ-A41R-01 8 70476352 70476352 G A SULF1 Missense_Mutation p.V48M 0.22 deleterious(0) possibly_damaging(0.566) TCGA-KQ-A41R-01 8 8234359 8234359 C A SGK223 Silent p.G520G 0.23 TCGA-KQ-A41R-01 8 86126866 86126866 A C C8orf59 Intron 0.34 TCGA-KQ-A41R-01 8 95704916 95704916 C T ESRP1 Missense_Mutation p.S611L 0.16 deleterious(0.02) benign(0.082) TCGA-KQ-A41R-01 9 100850141 100850141 G A TRIM14 Missense_Mutation p.R314C 0.40 deleterious(0) probably_damaging(0.953) TCGA-KQ-A41R-01 9 104238675 104238675 C T TMEM246 Missense_Mutation p.E234K 0.47 tolerated(1) benign(0) TCGA-KQ-A41R-01 9 108097853 108097853 C T SLC44A1 Silent p.F93F 0.46 TCGA-KQ-A41R-01 9 110248112 110248112 G A KLF4 Missense_Mutation p.R454C 0.39 deleterious(0) probably_damaging(0.988) TCGA-KQ-A41R-01 9 114905895 114905895 C T SUSD1 Missense_Mutation p.E128K 0.07 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 9 116226094 116226094 C A RGS3 Intron 0.41 TCGA-KQ-A41R-01 9 123734244 123734244 G A C5 Silent p.V1348V 0.21 TCGA-KQ-A41R-01 9 125273326 125273326 G A OR1J2 Silent p.L82L 0.36 TCGA-KQ-A41R-01 9 126128336 126128336 G A CRB2 Missense_Mutation p.E187K 0.67 deleterious(0) unknown(0) TCGA-KQ-A41R-01 9 126202703 126202703 A G DENND1A Missense_Mutation p.L475P 0.33 tolerated(0.08) benign(0.025) TCGA-KQ-A41R-01 9 127456067 127456067 C T NR6A1 Intron 0.50 TCGA-KQ-A41R-01 9 128003445 128003445 A C HSPA5 5'UTR 0.38 TCGA-KQ-A41R-01 9 128728252 128728252 G C PBX3 3'UTR 0.23 TCGA-KQ-A41R-01 9 129595392 129595392 G T ZBTB43 Nonsense_Mutation p.E202* 0.45 TCGA-KQ-A41R-01 9 130830845 130830845 G A SLC25A25 Missense_Mutation p.E83K 0.55 tolerated(0.79) benign(0.006) TCGA-KQ-A41R-01 9 131084576 131084576 C T TRUB2 Intron 0.17 TCGA-KQ-A41R-01 9 131482297 131482297 G C PKN3 Splice_Site p.X792_splice 0.37 TCGA-KQ-A41R-01 9 131709584 131709584 T C DOLK 5'UTR 0.40 TCGA-KQ-A41R-01 9 135801022 135801022 A G TSC1 Silent p.H105H 0.49 TCGA-KQ-A41R-01 9 136337194 136337194 C G SLC2A6 Silent p.L491L 0.44 TCGA-KQ-A41R-01 9 137300873 137300875 ACA - RXRA In_Frame_Del p.N174del 0.09 TCGA-KQ-A41R-01 9 137328449 137328449 C T RXRA Nonsense_Mutation p.Q460* 0.43 TCGA-KQ-A41R-01 9 138395356 138395356 C T MRPS2 Intron 0.67 TCGA-KQ-A41R-01 9 139316355 139316355 C T PMPCA Silent p.I445I 0.49 TCGA-KQ-A41R-01 9 139686204 139686204 G A TMEM141 Missense_Mutation p.M32I 0.45 deleterious(0.04) benign(0.045) TCGA-KQ-A41R-01 9 139903035 139903035 C G ABCA2 Missense_Mutation p.E2370Q 0.42 tolerated(0.07) benign(0.013) TCGA-KQ-A41R-01 9 139974501 139974501 C G UAP1L1 Missense_Mutation p.P362R 0.45 deleterious(0) probably_damaging(1) TCGA-KQ-A41R-01 9 140917592 140917592 C T CACNA1B Silent p.F799F 0.62 TCGA-KQ-A41R-01 9 19050547 19050555 TTGAGAAGC - RRAGA In_Frame_Del p.F297_K299del 0.47 TCGA-KQ-A41R-01 9 19379693 19379693 C T RPS6 Intron 0.38 TCGA-KQ-A41R-01 9 21481697 21481697 G A IFNE 5'UTR 0.40 TCGA-KQ-A41R-01 9 21974792 21974792 G A CDKN2A Missense_Mutation p.S12L 0.17 tolerated(0.5) benign(0.01) TCGA-KQ-A41R-01 9 34621544 34621544 C A ARID3C Missense_Mutation p.A384S 0.43 deleterious(0) probably_damaging(0.942) TCGA-KQ-A41R-01 9 35377478 35377478 G A UNC13B Silent p.K534K 0.24 TCGA-KQ-A41R-01 9 5830743 5830743 T C ERMP1 Silent p.S208S 0.45 TCGA-KQ-A41R-01 9 71503963 71503963 G A PIP5K1B Missense_Mutation p.V129M 0.41 deleterious(0) possibly_damaging(0.815) TCGA-KQ-A41R-01 9 73478017 73478017 C A TRPM3 Missense_Mutation p.G90V 0.52 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 9 75516177 75516177 C T ALDH1A1 Missense_Mutation p.E485K 0.38 tolerated(0.11) benign(0.27) TCGA-KQ-A41R-01 9 84202674 84202674 C G TLE1 Silent p.T633T 0.48 TCGA-KQ-A41R-01 9 8518314 8518314 T C PTPRD Silent p.K359K 0.10 TCGA-KQ-A41R-01 9 86928348 86928348 T C SLC28A3 Missense_Mutation p.N28D 0.46 tolerated(0.36) benign(0) TCGA-KQ-A41R-01 9 88307691 88307691 G C AGTPBP1 Missense_Mutation p.Q24E 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-KQ-A41R-01 9 91993855 91993855 G A SEMA4D Missense_Mutation p.R785C 0.42 tolerated(1) benign(0) TCGA-KQ-A41R-01 9 95277297 95277297 T C ECM2 Missense_Mutation p.T224A 0.40 tolerated(0.74) benign(0.014) TCGA-KQ-A41R-01 9 97522290 97522290 G A C9orf3 Silent p.G75G 0.39 TCGA-KQ-A41R-01 X 100349618 100349618 C A TMEM35 Silent p.I59I 0.50 TCGA-KQ-A41R-01 X 100608331 100608331 T A BTK Missense_Mutation p.M587L 0.05 deleterious(0.05) benign(0.016) TCGA-KQ-A41R-01 X 101138780 101138780 T A ZMAT1 Missense_Mutation p.K540M 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-KQ-A41R-01 X 101623491 101623491 G C NXF2B Missense_Mutation p.Q229E 0.10 deleterious(0.03) benign(0.191) TCGA-KQ-A41R-01 X 101822135 101822135 C T NXF4 RNA 0.44 TCGA-KQ-A41R-01 X 102004706 102004706 G A BHLHB9 Silent p.V261V 0.05 TCGA-KQ-A41R-01 X 102632312 102632312 A T NGFRAP1 Intron 0.40 TCGA-KQ-A41R-01 X 107978813 107978813 G A IRS4 Silent p.F254F 0.19 TCGA-KQ-A41R-01 X 108718538 108718538 G A GUCY2F Missense_Mutation p.R210W 0.29 deleterious(0) possibly_damaging(0.786) TCGA-KQ-A41R-01 X 108921320 108921320 C T ACSL4 Missense_Mutation p.G317D 0.24 deleterious(0) possibly_damaging(0.899) TCGA-KQ-A41R-01 X 109764860 109764860 C T TDGF1P3 RNA 0.32 TCGA-KQ-A41R-01 X 110576300 110576300 C T DCX Missense_Mutation p.D344N 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-KQ-A41R-01 X 113949669 113949669 C G HTR2C Intron 0.27 TCGA-KQ-A41R-01 X 114404908 114404908 G A LRCH2 Missense_Mutation p.L318F 0.40 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41R-01 X 114541341 114541341 C G LUZP4 Nonsense_Mutation p.S305* 0.25 TCGA-KQ-A41R-01 X 120094344 120094344 C T CT47A6 Missense_Mutation p.E247K 0.32 tolerated(0.47) possibly_damaging(0.486) TCGA-KQ-A41R-01 X 123179192 123179192 C T STAG2 Missense_Mutation p.A214V 0.47 deleterious(0) possibly_damaging(0.798) TCGA-KQ-A41R-01 X 123518386 123518386 A G TENM1 Missense_Mutation p.I2132T 0.33 deleterious(0) benign(0.148) TCGA-KQ-A41R-01 X 123779157 123779157 C G TENM1 Missense_Mutation p.G571A 0.43 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41R-01 X 125686553 125686553 C T DCAF12L1 Silent p.A13A 0.15 TCGA-KQ-A41R-01 X 133699969 133699969 C T PLAC1 3'UTR 0.29 TCGA-KQ-A41R-01 X 133700009 133700009 C T PLAC1 3'UTR 0.20 TCGA-KQ-A41R-01 X 134709061 134709061 G A DDX26B Silent p.L561L 0.26 TCGA-KQ-A41R-01 X 135405405 135405405 G A GPR112 Missense_Mutation p.G180D 0.08 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41R-01 X 13754678 13754678 G A OFD1 Missense_Mutation p.E65K 0.48 tolerated(0.17) possibly_damaging(0.713) TCGA-KQ-A41R-01 X 140996333 140996333 G T MAGEC1 Missense_Mutation p.W1048L 0.23 tolerated(0.19) unknown(0) TCGA-KQ-A41R-01 X 152610172 152610172 G C ZNF275 Intron 0.25 TCGA-KQ-A41R-01 X 153172208 153172208 G A AVPR2 3'UTR 0.25 TCGA-KQ-A41R-01 X 153284736 153284736 C T IRAK1 Silent p.P116P 0.53 TCGA-KQ-A41R-01 X 153541021 153541021 C A TKTL1 Missense_Mutation p.T254N 0.15 tolerated(0.46) benign(0.003) TCGA-KQ-A41R-01 X 153640166 153640166 G A TAZ 5'UTR 0.50 TCGA-KQ-A41R-01 X 155235817 155235817 C G IL9R Missense_Mutation p.T284S 0.42 tolerated(0.33) benign(0.036) TCGA-KQ-A41R-01 X 16657274 16657274 T C CTPS2 Missense_Mutation p.I463M 0.41 tolerated(0.22) benign(0.343) TCGA-KQ-A41R-01 X 18221672 18221672 T C BEND2 Missense_Mutation p.N286D 0.06 tolerated(0.46) benign(0.002) TCGA-KQ-A41R-01 X 19971995 19971995 G T CXorf23 Nonsense_Mutation p.S489* 0.49 TCGA-KQ-A41R-01 X 23740102 23740102 C A ACOT9 Splice_Site p.X162_splice 0.08 TCGA-KQ-A41R-01 X 24483596 24483596 G A PDK3 Silent p.L8L 0.24 TCGA-KQ-A41R-01 X 24906225 24906225 A G POLA1 Missense_Mutation p.T1378A 0.43 tolerated(0.32) benign(0.01) TCGA-KQ-A41R-01 X 3238723 3238723 G A MXRA5 Missense_Mutation p.S1668L 0.53 tolerated(0.13) benign(0.055) TCGA-KQ-A41R-01 X 37653050 37653050 G A CYBB Missense_Mutation p.R157Q 0.57 tolerated(0.11) benign(0.02) TCGA-KQ-A41R-01 X 39933151 39933151 G A BCOR Missense_Mutation p.P483L 0.52 tolerated(0.25) probably_damaging(0.999) TCGA-KQ-A41R-01 X 44922695 44922695 G A KDM6A Missense_Mutation p.R519Q 0.35 tolerated(0.28) benign(0.004) TCGA-KQ-A41R-01 X 46712997 46712997 C T RP2 Silent p.L63L 0.51 TCGA-KQ-A41R-01 X 47038822 47038822 C T RBM10 Nonsense_Mutation p.Q277* 0.33 TCGA-KQ-A41R-01 X 47919866 47919866 C T ZNF630 Nonsense_Mutation p.W67* 0.65 TCGA-KQ-A41R-01 X 53459339 53459339 C T HSD17B10 Silent p.V71V 0.28 TCGA-KQ-A41R-01 X 53607868 53607868 C G HUWE1 Missense_Mutation p.R1880P 0.32 probably_damaging(0.994) TCGA-KQ-A41R-01 X 55651015 55651015 C T FOXR2 Nonsense_Mutation p.Q291* 0.51 TCGA-KQ-A41R-01 X 63412530 63412530 G A AMER1 Nonsense_Mutation p.Q213* 0.35 TCGA-KQ-A41R-01 X 67413751 67413751 G T OPHN1 Silent p.I394I 0.32 TCGA-KQ-A41R-01 X 69353913 69353913 A G IGBP1 Missense_Mutation p.Q39R 0.11 deleterious(0) probably_damaging(0.993) TCGA-KQ-A41R-01 X 69749756 69749756 C T TEX11 Missense_Mutation p.E887K 0.25 deleterious(0.02) benign(0.077) TCGA-KQ-A41R-01 X 70468610 70468610 C G ZMYM3 Missense_Mutation p.D555H 0.60 tolerated(0.12) possibly_damaging(0.69) TCGA-KQ-A41R-01 X 73068515 73068515 G A XIST RNA 0.29 TCGA-KQ-A41R-01 X 84363194 84363194 T C SATL1 Missense_Mutation p.I261V 0.26 tolerated(0.1) benign(0.227) TCGA-KQ-A41R-01 X 84510444 84510444 G T ZNF711 Missense_Mutation p.V87L 0.15 deleterious(0.01) possibly_damaging(0.823) TCGA-KQ-A41S-01 10 101825069 101825069 G A CPN1 Missense_Mutation p.S212L 0.10 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 10 102781615 102781615 G C PDZD7 Missense_Mutation p.I269M 0.05 deleterious(0) possibly_damaging(0.896) TCGA-KQ-A41S-01 10 11356183 11356183 G T CELF2 Missense_Mutation p.G353V 0.33 tolerated(0.08) possibly_damaging(0.703) TCGA-KQ-A41S-01 10 128840895 128840895 C T DOCK1 Nonsense_Mutation p.Q652* 0.07 TCGA-KQ-A41S-01 10 15115139 15115139 C G OLAH Missense_Mutation p.H290D 0.41 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41S-01 10 16957095 16957095 C T CUBN Silent p.R2429R 0.26 TCGA-KQ-A41S-01 10 37454021 37454021 G C ANKRD30A Splice_Site p.X612_splice 0.27 TCGA-KQ-A41S-01 10 55839096 55839096 C T PCDH15 Missense_Mutation p.D696N 0.11 tolerated(0.22) benign(0.222) TCGA-KQ-A41S-01 10 7618424 7618424 G A ITIH5 Missense_Mutation p.T657M 0.52 tolerated(0.12) benign(0.007) TCGA-KQ-A41S-01 10 88211774 88211774 C T WAPAL Missense_Mutation p.D1022N 0.41 tolerated(0.14) benign(0.004) TCGA-KQ-A41S-01 10 88939920 88939920 G A FAM35A Silent p.L684L 0.09 TCGA-KQ-A41S-01 10 90988136 90988136 G A LIPA Silent p.F83F 0.36 TCGA-KQ-A41S-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.20 TCGA-KQ-A41S-01 11 101778671 101778671 C T ANGPTL5 5'UTR 0.35 TCGA-KQ-A41S-01 11 108384027 108384027 G A EXPH5 Missense_Mutation p.S736L 0.17 deleterious(0.01) benign(0.017) TCGA-KQ-A41S-01 11 113235556 113235556 G C TTC12 Splice_Site p.X606_splice 0.14 TCGA-KQ-A41S-01 11 36597187 36597187 G - RAG1 Frame_Shift_Del p.V779* 0.32 TCGA-KQ-A41S-01 11 403947 403947 G A PKP3 Silent p.T694T 0.16 TCGA-KQ-A41S-01 11 45672447 45672447 G C CHST1 Silent p.L9L 0.38 TCGA-KQ-A41S-01 11 55563247 55563247 T C OR5D14 Silent p.D72D 0.61 TCGA-KQ-A41S-01 11 57310614 57310614 G A SMTNL1 Missense_Mutation p.E185K 0.61 tolerated(0.22) benign(0.016) TCGA-KQ-A41S-01 11 59283291 59283291 G A OR4D9 Silent p.K302K 0.15 TCGA-KQ-A41S-01 11 61111327 61111327 G A DAK Splice_Site p.X328_splice 0.17 TCGA-KQ-A41S-01 11 62289685 62289685 G A AHNAK Silent p.F4068F 0.13 TCGA-KQ-A41S-01 11 63681756 63681756 C T RCOR2 Missense_Mutation p.D218N 0.20 tolerated(0.16) possibly_damaging(0.827) TCGA-KQ-A41S-01 11 64000337 64000337 G A DNAJC4 Missense_Mutation p.R176K 0.56 tolerated(0.12) benign(0.439) TCGA-KQ-A41S-01 11 65063506 65063506 C G POLA2 Intron 0.21 TCGA-KQ-A41S-01 11 65116365 65116365 G A DPF2 Missense_Mutation p.M354I 0.60 deleterious(0) probably_damaging(0.932) TCGA-KQ-A41S-01 11 65988244 65988244 C T PACS1 Missense_Mutation p.T394M 0.38 deleterious(0) probably_damaging(0.993) TCGA-KQ-A41S-01 11 6953674 6953674 G C ZNF215 Missense_Mutation p.L57F 0.54 tolerated(0.19) benign(0.105) TCGA-KQ-A41S-01 11 77918604 77918604 G A USP35 Missense_Mutation p.E474K 0.08 tolerated(0.28) unknown(0) TCGA-KQ-A41S-01 11 82880300 82880300 C T PCF11 Nonsense_Mutation p.Q975* 0.21 TCGA-KQ-A41S-01 12 101779423 101779423 G C UTP20 Missense_Mutation p.E2707Q 0.38 deleterious(0) probably_damaging(0.993) TCGA-KQ-A41S-01 12 108012011 108012011 G C BTBD11 Missense_Mutation p.E770Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41S-01 12 10961883 10961883 C G TAS2R9 Missense_Mutation p.L264F 0.44 tolerated(0.19) possibly_damaging(0.525) TCGA-KQ-A41S-01 12 122396869 122396869 T G WDR66 Missense_Mutation p.F668V 0.14 deleterious(0.02) possibly_damaging(0.902) TCGA-KQ-A41S-01 12 1599471 1599471 G A ERC1 3'UTR 0.38 TCGA-KQ-A41S-01 12 27148270 27148270 T A TM7SF3 Missense_Mutation p.Y197F 0.40 deleterious(0.04) benign(0.015) TCGA-KQ-A41S-01 12 30787179 30787179 G C IPO8 Missense_Mutation p.Q913E 0.22 tolerated(0.85) benign(0.017) TCGA-KQ-A41S-01 12 48131869 48131869 G A RAPGEF3 Silent p.L863L 0.35 TCGA-KQ-A41S-01 12 49315247 49315247 G T CCDC65 3'UTR 0.11 TCGA-KQ-A41S-01 12 498114 498114 G C KDM5A Missense_Mutation p.I48M 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-KQ-A41S-01 12 498349 498349 G C KDM5A 5'UTR 0.44 TCGA-KQ-A41S-01 12 51749655 51749655 C G GALNT6 Missense_Mutation p.G564R 0.31 tolerated(0.66) benign(0.002) TCGA-KQ-A41S-01 12 53009982 53009982 G A KRT73 Silent p.S210S 0.18 TCGA-KQ-A41S-01 12 55420386 55420386 G A NEUROD4 Missense_Mutation p.E55K 0.18 tolerated(0.14) possibly_damaging(0.524) TCGA-KQ-A41S-01 12 55420598 55420598 G C NEUROD4 Missense_Mutation p.K125N 0.16 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 12 57586655 57586655 A G LRP1 Missense_Mutation p.N2486S 0.23 probably_damaging(0.993) TCGA-KQ-A41S-01 12 64588242 64588242 G C C12orf66 Missense_Mutation p.L240V 0.21 tolerated(0.27) probably_damaging(0.965) TCGA-KQ-A41S-01 12 65082182 65082182 G A RASSF3 Missense_Mutation p.E136K 0.10 deleterious(0.02) benign(0.011) TCGA-KQ-A41S-01 13 103445990 103445990 C G KDELC1 Missense_Mutation p.Q185H 0.05 tolerated(0.08) possibly_damaging(0.907) TCGA-KQ-A41S-01 13 111545284 111545284 C G ANKRD10 Intron 0.37 TCGA-KQ-A41S-01 13 41706474 41706474 A G KBTBD6 Silent p.D58D 0.13 TCGA-KQ-A41S-01 13 45914259 45914259 C T TPT1 Missense_Mutation p.E55K 0.14 tolerated(0.07) benign(0.141) TCGA-KQ-A41S-01 13 46538069 46538069 A C ZC3H13 Missense_Mutation p.M1528R 0.40 unknown(0) TCGA-KQ-A41S-01 13 78492443 78492443 G - EDNRB Frame_Shift_Del p.P179Rfs*35 0.33 TCGA-KQ-A41S-01 14 100134572 100134572 C T HHIPL1 Silent p.F554F 0.07 TCGA-KQ-A41S-01 14 105739116 105739116 C T BRF1 Silent p.K127K 0.09 TCGA-KQ-A41S-01 14 21828577 21828577 G C SUPT16H Silent p.L724L 0.08 TCGA-KQ-A41S-01 14 21967257 21967257 C A METTL3 Missense_Mutation p.D515Y 0.12 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 14 23547473 23547473 C T ACIN1 Silent p.G728G 0.07 TCGA-KQ-A41S-01 14 61924268 61924283 GAAGGTGCTGAAGAAG - PRKCH Frame_Shift_Del p.K384Tfs*2 0.45 TCGA-KQ-A41S-01 14 63416985 63416985 C T KCNH5 Missense_Mutation p.G412E 0.09 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 14 74753514 74753514 C G ABCD4 Missense_Mutation p.D548H 0.10 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 15 25514954 25514954 G A SNORD115-48 RNA 0.10 TCGA-KQ-A41S-01 15 40764358 40764358 C T CHST14 Missense_Mutation p.P316S 0.30 tolerated(0.21) possibly_damaging(0.591) TCGA-KQ-A41S-01 15 43784203 43784203 C A TP53BP1 Missense_Mutation p.A95S 0.27 tolerated(0.22) benign(0.012) TCGA-KQ-A41S-01 15 50475065 50475065 C G SLC27A2 Missense_Mutation p.F147L 0.07 tolerated(0.44) benign(0.075) TCGA-KQ-A41S-01 15 50546416 50546416 G C HDC Missense_Mutation p.L211V 0.07 tolerated(0.14) probably_damaging(0.98) TCGA-KQ-A41S-01 15 60795025 60795025 C T RORA Missense_Mutation p.D406N 0.13 tolerated(1) benign(0.013) TCGA-KQ-A41S-01 15 63097917 63097917 A G TLN2 Missense_Mutation p.Q2199R 0.23 deleterious(0) possibly_damaging(0.893) TCGA-KQ-A41S-01 15 64791642 64791642 C T ZNF609 Silent p.S8S 0.12 TCGA-KQ-A41S-01 16 11859381 11859381 G A ZC3H7A Silent p.L561L 0.19 TCGA-KQ-A41S-01 16 18839369 18839369 G A SMG1 Missense_Mutation p.S3242F 0.27 tolerated(0.08) possibly_damaging(0.726) TCGA-KQ-A41S-01 16 19058553 19058553 C A TMC7 Silent p.I574I 0.13 TCGA-KQ-A41S-01 16 27789956 27789956 G A KIAA0556 3'UTR 0.11 TCGA-KQ-A41S-01 16 28884863 28884863 G A SH2B1 Missense_Mutation p.E665K 0.33 deleterious_low_confidence(0.01) benign(0.292) TCGA-KQ-A41S-01 16 61854982 61854982 G A CDH8 Missense_Mutation p.L291F 0.23 deleterious(0.03) benign(0.286) TCGA-KQ-A41S-01 16 67964676 67964676 C G CTRL Missense_Mutation p.D91H 0.23 deleterious(0) probably_damaging(0.986) TCGA-KQ-A41S-01 16 68842438 68842438 G T CDH1 Nonsense_Mutation p.E167* 0.29 TCGA-KQ-A41S-01 16 68842716 68842716 G T CDH1 Nonsense_Mutation p.E218* 0.38 TCGA-KQ-A41S-01 16 71606110 71606110 G A TAT Missense_Mutation p.H229Y 0.32 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 17 27071271 27071271 C G TRAF4 Silent p.L47L 0.41 TCGA-KQ-A41S-01 17 28652020 28652020 G C TMIGD1 Missense_Mutation p.Q152E 0.05 tolerated(0.19) benign(0.113) TCGA-KQ-A41S-01 17 37341039 37341039 C T CACNB1 Missense_Mutation p.E243K 0.06 deleterious(0.02) probably_damaging(0.994) TCGA-KQ-A41S-01 17 37369804 37369804 C T STAC2 Missense_Mutation p.D317N 0.10 deleterious(0) probably_damaging(0.962) TCGA-KQ-A41S-01 17 37868208 37868208 C A ERBB2 Missense_Mutation p.S310Y 0.04 deleterious(0) probably_damaging(0.996) TCGA-KQ-A41S-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.29 deleterious(0.05) benign(0.006) TCGA-KQ-A41S-01 17 38182548 38182548 G A MED24 Silent p.L616L 0.10 TCGA-KQ-A41S-01 17 4937052 4937052 C G SLC52A1 Missense_Mutation p.E244D 0.06 tolerated(0.48) benign(0.003) TCGA-KQ-A41S-01 17 63554266 63554266 C G AXIN2 Missense_Mutation p.R158T 0.14 deleterious(0) possibly_damaging(0.836) TCGA-KQ-A41S-01 17 7156274 7156274 G C ELP5 Missense_Mutation p.E65Q 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-KQ-A41S-01 17 72287268 72287268 G C DNAI2 Missense_Mutation p.Q240H 0.06 deleterious(0) possibly_damaging(0.853) TCGA-KQ-A41S-01 17 7256890 7256890 G A KCTD11 Missense_Mutation p.R210Q 0.16 tolerated(0.33) probably_damaging(0.992) TCGA-KQ-A41S-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.39 TCGA-KQ-A41S-01 17 79205452 79205452 C G ENTHD2 Missense_Mutation p.L247F 0.41 deleterious(0.03) possibly_damaging(0.901) TCGA-KQ-A41S-01 19 11118698 11118698 G C SMARCA4 Missense_Mutation p.E708Q 0.24 possibly_damaging(0.772) TCGA-KQ-A41S-01 19 11546865 11546865 G A PRKCSH 5'UTR 0.16 TCGA-KQ-A41S-01 19 11943932 11943932 C T ZNF440 3'UTR 0.13 TCGA-KQ-A41S-01 19 1376574 1376574 G C MUM1 Nonstop_Mutation p.*712Sext*172 0.23 TCGA-KQ-A41S-01 19 14034524 14034524 G A CC2D1A Missense_Mutation p.E614K 0.16 deleterious(0.01) possibly_damaging(0.488) TCGA-KQ-A41S-01 19 1455193 1455193 C G APC2 Silent p.L153L 0.25 TCGA-KQ-A41S-01 19 15760759 15760759 C T CYP4F3 Silent p.L228L 0.15 TCGA-KQ-A41S-01 19 16989464 16989464 G C SIN3B Missense_Mutation p.E1139Q 0.12 tolerated(0.2) benign(0.097) TCGA-KQ-A41S-01 19 3179881 3179881 C T S1PR4 Missense_Mutation p.S364F 0.11 deleterious(0.01) probably_damaging(0.926) TCGA-KQ-A41S-01 19 43570726 43570726 G A PSG2 Missense_Mutation p.L331F 0.17 tolerated(0.71) benign(0) TCGA-KQ-A41S-01 19 44981601 44981601 G A ZNF180 Missense_Mutation p.S366L 0.06 deleterious(0) possibly_damaging(0.889) TCGA-KQ-A41S-01 19 5211637 5211637 G C PTPRS Missense_Mutation p.S1733C 0.47 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41S-01 19 52520410 52520410 C A ZNF614 Missense_Mutation p.K147N 0.09 tolerated(1) benign(0.004) TCGA-KQ-A41S-01 19 52618827 52618827 G A ZNF616 Silent p.F530F 0.20 TCGA-KQ-A41S-01 19 52825351 52825351 G C ZNF480 Missense_Mutation p.R283T 0.18 deleterious(0) benign(0.4) TCGA-KQ-A41S-01 19 53344845 53344845 C G ZNF468 Missense_Mutation p.Q234H 0.47 tolerated(0.1) benign(0) TCGA-KQ-A41S-01 19 53572166 53572166 C G ZNF160 Missense_Mutation p.E541Q 0.07 tolerated(0.09) benign(0.325) TCGA-KQ-A41S-01 19 54376871 54376871 C T MYADM Missense_Mutation p.R30W 0.12 deleterious(0) probably_damaging(0.928) TCGA-KQ-A41S-01 19 54445351 54445351 G A CACNG7 Missense_Mutation p.R211H 0.31 deleterious(0.03) possibly_damaging(0.901) TCGA-KQ-A41S-01 19 54677887 54677887 G A MBOAT7 Missense_Mutation p.R424W 0.16 deleterious(0) probably_damaging(0.937) TCGA-KQ-A41S-01 19 57286747 57286747 G A ZIM2 Missense_Mutation p.S298L 0.44 tolerated(0.21) benign(0.023) TCGA-KQ-A41S-01 19 57955273 57955273 G A ZNF749 Missense_Mutation p.E253K 0.13 tolerated(0.25) possibly_damaging(0.636) TCGA-KQ-A41S-01 19 6364637 6364637 C T CLPP Missense_Mutation p.S181L 0.18 tolerated(0.09) possibly_damaging(0.646) TCGA-KQ-A41S-01 19 8319426 8319426 C G CERS4 Missense_Mutation p.Q73E 0.21 tolerated(0.14) benign(0.005) TCGA-KQ-A41S-01 19 9407283 9407283 A C ZNF699 Missense_Mutation p.F266C 0.09 deleterious(0) probably_damaging(0.947) TCGA-KQ-A41S-01 19 9965102 9965102 C A OLFM2 Missense_Mutation p.M375I 0.18 tolerated(0.59) benign(0.052) TCGA-KQ-A41S-01 1 110882292 110882292 G A RBM15 Missense_Mutation p.D89N 0.38 tolerated_low_confidence(0.87) benign(0.022) TCGA-KQ-A41S-01 1 113456600 113456600 C A SLC16A1 Silent p.G472G 0.24 TCGA-KQ-A41S-01 1 145440904 145440904 C T TXNIP Missense_Mutation p.P331S 0.07 deleterious(0) probably_damaging(0.998) TCGA-KQ-A41S-01 1 150967160 150967160 C T ANXA9 Silent p.L320L 0.31 TCGA-KQ-A41S-01 1 154090258 154090258 C T NUP210L Silent p.G521G 0.08 TCGA-KQ-A41S-01 1 156108921 156108921 G A LMNA 3'UTR 0.23 TCGA-KQ-A41S-01 1 156108922 156108922 G T LMNA 3'UTR 0.23 TCGA-KQ-A41S-01 1 156621263 156621263 C T BCAN Missense_Mutation p.S360F 0.11 tolerated(0.07) benign(0.288) TCGA-KQ-A41S-01 1 158224516 158224516 C T CD1A Silent p.D19D 0.47 TCGA-KQ-A41S-01 1 158227603 158227603 T A CD1A 3'UTR 0.26 TCGA-KQ-A41S-01 1 162824590 162824590 C T C1orf110 Missense_Mutation p.E292K 0.22 tolerated(0.28) possibly_damaging(0.801) TCGA-KQ-A41S-01 1 169833528 169833528 G A SCYL3 Silent p.L313L 0.11 TCGA-KQ-A41S-01 1 176132971 176132971 C G RFWD2 Missense_Mutation p.D208H 0.10 deleterious(0.05) benign(0.028) TCGA-KQ-A41S-01 1 180804090 180804090 G A XPR1 Silent p.V405V 0.10 TCGA-KQ-A41S-01 1 181732601 181732601 C T CACNA1E Silent p.L1583L 0.16 TCGA-KQ-A41S-01 1 19593913 19593913 C G AKR7L Missense_Mutation p.E115Q 0.12 benign(0.32) TCGA-KQ-A41S-01 1 201750208 201750208 G C NAV1 Missense_Mutation p.E478D 0.05 tolerated(0.61) benign(0.013) TCGA-KQ-A41S-01 1 203800826 203800826 T C ZC3H11A Silent p.P246P 0.22 TCGA-KQ-A41S-01 1 20412658 20412658 C T PLA2G5 Silent p.Y41Y 0.34 TCGA-KQ-A41S-01 1 206822066 206822066 C G DYRK3 Missense_Mutation p.S508C 0.12 deleterious(0) possibly_damaging(0.526) TCGA-KQ-A41S-01 1 22050463 22050463 T C USP48 Missense_Mutation p.I526V 0.22 tolerated(0.28) benign(0.003) TCGA-KQ-A41S-01 1 231042679 231042679 G A TTC13 Missense_Mutation p.S852F 0.08 deleterious(0) probably_damaging(0.943) TCGA-KQ-A41S-01 1 235602230 235602230 C G TBCE Silent p.L421L 0.17 TCGA-KQ-A41S-01 1 237993844 237993844 C T RYR2 Silent p.I4890I 0.18 TCGA-KQ-A41S-01 1 24020313 24020313 A G RPL11 Silent p.R58R 0.20 TCGA-KQ-A41S-01 1 242159687 242159687 C G MAP1LC3C Silent p.R74R 0.15 TCGA-KQ-A41S-01 1 27278098 27278098 C G C1orf172 Missense_Mutation p.E258D 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-KQ-A41S-01 1 31437662 31437662 C T PUM1 Missense_Mutation p.G728R 0.09 deleterious(0.05) possibly_damaging(0.756) TCGA-KQ-A41S-01 1 32671902 32671902 G A IQCC Intron 0.14 TCGA-KQ-A41S-01 1 33745810 33745810 G T ZNF362 Silent p.P145P 0.34 TCGA-KQ-A41S-01 1 33960010 33960010 C T ZSCAN20 Missense_Mutation p.S689F 0.27 tolerated(0.5) possibly_damaging(0.906) TCGA-KQ-A41S-01 1 34166245 34166245 C T CSMD2 Missense_Mutation p.R1162H 0.37 tolerated(0.26) possibly_damaging(0.828) TCGA-KQ-A41S-01 1 34254247 34254247 C G CSMD2 Missense_Mutation p.Q499H 0.09 tolerated(0.07) benign(0.111) TCGA-KQ-A41S-01 1 35824558 35824558 G C ZMYM4 Missense_Mutation p.D40H 0.08 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-KQ-A41S-01 1 40562864 40562864 G A PPT1 Missense_Mutation p.P16L 0.16 tolerated(0.81) benign(0) TCGA-KQ-A41S-01 1 47364623 47364623 C G CYP4Z2P RNA 0.09 TCGA-KQ-A41S-01 1 51787490 51787490 C G TTC39A Missense_Mutation p.E21Q 0.25 tolerated(0.59) benign(0.004) TCGA-KQ-A41S-01 1 6202244 6202244 C T CHD5 Missense_Mutation p.E794K 0.35 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41S-01 1 65139035 65139035 C T CACHD1 Missense_Mutation p.P821L 0.27 deleterious(0.01) benign(0.254) TCGA-KQ-A41S-01 1 6761824 6761824 C T DNAJC11 Missense_Mutation p.E13K 0.40 tolerated(0.05) benign(0.044) TCGA-KQ-A41S-01 1 71872994 71872994 T C NEGR1 3'UTR 0.16 TCGA-KQ-A41S-01 20 25657196 25657196 C T ZNF337 Missense_Mutation p.R243Q 0.20 deleterious(0.05) possibly_damaging(0.863) TCGA-KQ-A41S-01 20 4202275 4202275 C G ADRA1D Missense_Mutation p.E538D 0.27 deleterious_low_confidence(0) benign(0.031) TCGA-KQ-A41S-01 20 62842624 62842624 G A MYT1 Missense_Mutation p.V453I 0.42 probably_damaging(0.998) TCGA-KQ-A41S-01 21 45670792 45670792 T C DNMT3L Silent p.A270A 0.21 TCGA-KQ-A41S-01 22 20460066 20460066 C T RIMBP3 Silent p.E412E 0.28 TCGA-KQ-A41S-01 22 22313516 22313516 C T TOP3B Missense_Mutation p.M631I 0.51 deleterious(0.01) possibly_damaging(0.53) TCGA-KQ-A41S-01 22 23243510 23243510 G CTAA IGLC2 3'UTR 0.22 TCGA-KQ-A41S-01 22 42609223 42609223 C A TCF20 Nonsense_Mutation p.E697* 0.18 TCGA-KQ-A41S-01 2 152470966 152470966 C G NEB Missense_Mutation p.E3809Q 0.40 benign(0.095) TCGA-KQ-A41S-01 2 160085383 160085383 G C TANC1 Missense_Mutation p.R1376T 0.17 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41S-01 2 179416911 179416911 G A TTN Missense_Mutation p.A30239V 0.13 TCGA-KQ-A41S-01 2 182786990 182786990 G C SSFA2 Missense_Mutation p.E1176Q 0.14 deleterious(0.02) benign(0.043) TCGA-KQ-A41S-01 2 185798393 185798393 G A ZNF804A Missense_Mutation p.E107K 0.09 deleterious(0) probably_damaging(0.956) TCGA-KQ-A41S-01 2 189868984 189868984 G A COL3A1 Missense_Mutation p.G942E 0.50 probably_damaging(0.999) TCGA-KQ-A41S-01 2 196892748 196892748 G A DNAH7 Missense_Mutation p.S141L 0.12 tolerated(0.19) benign(0.001) TCGA-KQ-A41S-01 2 200137140 200137140 G A SATB2 Nonsense_Mutation p.Q666* 0.18 TCGA-KQ-A41S-01 2 207345997 207345997 C T ADAM23 Silent p.F158F 0.13 TCGA-KQ-A41S-01 2 225343033 225343033 C G CUL3 Missense_Mutation p.E687Q 0.05 deleterious(0.01) benign(0.418) TCGA-KQ-A41S-01 2 231174750 231174750 G T SP140 Nonsense_Mutation p.E724* 0.15 TCGA-KQ-A41S-01 2 234750411 234750411 C G HJURP Missense_Mutation p.D339H 0.12 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41S-01 2 27852011 27852011 G A GPN1 Missense_Mutation p.G43E 0.11 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 2 44040381 44040381 C T ABCG5 Silent p.E610E 0.19 TCGA-KQ-A41S-01 2 72802653 72802653 G A EXOC6B Silent p.L272L 0.11 TCGA-KQ-A41S-01 2 85768265 85768265 G C MAT2A Missense_Mutation p.D51H 0.16 tolerated(0.27) benign(0.008) TCGA-KQ-A41S-01 2 96992465 96992465 G A ITPRIPL1 Silent p.R40R 0.10 TCGA-KQ-A41S-01 2 96992571 96992571 C G ITPRIPL1 Missense_Mutation p.Q76E 0.07 tolerated(1) benign(0.004) TCGA-KQ-A41S-01 2 97267955 97267955 C G KANSL3 Missense_Mutation p.G794R 0.57 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-KQ-A41S-01 3 10191575 10191575 G T VHL Missense_Mutation p.D190Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-KQ-A41S-01 3 121410077 121410077 C G GOLGB1 Missense_Mutation p.E2712Q 0.04 probably_damaging(0.999) TCGA-KQ-A41S-01 3 123426701 123426701 C G MYLK Missense_Mutation p.D764H 0.09 deleterious(0.05) benign(0.418) TCGA-KQ-A41S-01 3 134323276 134323276 C T KY Silent p.P377P 0.27 TCGA-KQ-A41S-01 3 15466485 15466485 G A METTL6 Missense_Mutation p.P113S 0.11 tolerated(0.07) benign(0.088) TCGA-KQ-A41S-01 3 195782029 195782029 C T TFRC Silent p.L607L 0.19 TCGA-KQ-A41S-01 3 20164236 20164236 G A KAT2B Missense_Mutation p.M451I 0.37 tolerated(0.28) benign(0.001) TCGA-KQ-A41S-01 3 37035095 37035095 C T MLH1 Silent p.I19I 0.11 TCGA-KQ-A41S-01 3 47036911 47036911 C T NBEAL2 Silent p.I562I 0.14 TCGA-KQ-A41S-01 3 49399983 49399983 C G RHOA Missense_Mutation p.K118N 0.10 deleterious(0) probably_damaging(0.985) TCGA-KQ-A41S-01 3 52020495 52020495 G A ACY1 Silent p.L167L 0.23 TCGA-KQ-A41S-01 3 52256149 52256149 C T TLR9 Missense_Mutation p.R882Q 0.09 tolerated(0.42) benign(0.014) TCGA-KQ-A41S-01 3 52598085 52598085 C T PBRM1 Missense_Mutation p.D1261N 0.42 deleterious(0) possibly_damaging(0.728) TCGA-KQ-A41S-01 3 57283546 57283546 G A APPL1 Missense_Mutation p.C341Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-KQ-A41S-01 3 93605256 93605256 G A PROS1 Missense_Mutation p.P416L 0.09 tolerated(0.86) benign(0.053) TCGA-KQ-A41S-01 4 100273830 100273830 C G ADH1C Translation_Start_Site p.M1? 0.24 probably_damaging(0.995) TCGA-KQ-A41S-01 4 123332470 123332470 C G ADAD1 Silent p.L314L 0.09 TCGA-KQ-A41S-01 4 146475180 146475180 G C SMAD1 Missense_Mutation p.M414I 0.09 tolerated(0.23) possibly_damaging(0.643) TCGA-KQ-A41S-01 4 166235316 166235316 C A KLHL2 Missense_Mutation p.A540E 0.38 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41S-01 4 177608358 177608358 G A VEGFC Silent p.F376F 0.07 TCGA-KQ-A41S-01 4 23797381 23797381 G A PPARGC1A 3'UTR 0.46 TCGA-KQ-A41S-01 4 26921123 26921123 C G STIM2 Intron 0.12 TCGA-KQ-A41S-01 4 77660935 77660935 G A SHROOM3 Missense_Mutation p.D537N 0.10 tolerated(0.16) benign(0.009) TCGA-KQ-A41S-01 4 82010927 82010927 C G PRKG2 Missense_Mutation p.D742H 0.51 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 5 137593637 137593637 G A GFRA3 Missense_Mutation p.S159L 0.38 deleterious(0.01) benign(0.212) TCGA-KQ-A41S-01 5 146077608 146077608 C G PPP2R2B Missense_Mutation p.E93Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41S-01 5 167674305 167674305 G C TENM2 Missense_Mutation p.E2121Q 0.16 tolerated(0.08) possibly_damaging(0.501) TCGA-KQ-A41S-01 5 169096311 169096311 C G DOCK2 Silent p.L49L 0.13 TCGA-KQ-A41S-01 5 169675741 169675741 C T LCP2 Missense_Mutation p.R521K 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-KQ-A41S-01 5 176831246 176831246 C G F12 Silent p.P323P 0.18 TCGA-KQ-A41S-01 5 22078740 22078740 C G CDH12 Missense_Mutation p.D16H 0.03 tolerated(0.68) benign(0.002) TCGA-KQ-A41S-01 5 35691248 35691248 C T SPEF2 Missense_Mutation p.P545L 0.07 deleterious(0) probably_damaging(0.994) TCGA-KQ-A41S-01 5 39306788 39306788 C T C9 Silent p.V449V 0.09 TCGA-KQ-A41S-01 5 45262400 45262400 C T HCN1 Missense_Mutation p.E766K 0.12 tolerated_low_confidence(0.5) benign(0.052) TCGA-KQ-A41S-01 5 52396276 52396276 C A MOCS2 Missense_Mutation p.D156Y 0.10 deleterious(0) probably_damaging(0.988) TCGA-KQ-A41S-01 5 70945948 70945948 G C MCCC2 Missense_Mutation p.E476Q 0.17 deleterious_low_confidence(0.01) benign(0.08) TCGA-KQ-A41S-01 5 7784499 7784499 G A ADCY2 Silent p.L802L 0.08 TCGA-KQ-A41S-01 6 100896393 100896393 G A SIM1 Silent p.R235R 0.29 TCGA-KQ-A41S-01 6 111543275 111543275 G A SLC16A10 Missense_Mutation p.G462E 0.08 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 6 126249876 126249876 G A NCOA7 Missense_Mutation p.D930N 0.38 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 6 127652116 127652116 G C ECHDC1 Missense_Mutation p.Q26E 0.10 deleterious_low_confidence(0.02) benign(0.103) TCGA-KQ-A41S-01 6 127796503 127796503 C T SOGA3 Missense_Mutation p.D890N 0.16 deleterious(0) probably_damaging(0.97) TCGA-KQ-A41S-01 6 166845891 166845891 C G RPS6KA2 Missense_Mutation p.D482H 0.36 deleterious(0.01) probably_damaging(0.917) TCGA-KQ-A41S-01 6 24601308 24601308 G A KIAA0319 Silent p.L8L 0.09 TCGA-KQ-A41S-01 6 27101214 27101214 G C HIST1H2AG Missense_Mutation p.E122Q 0.06 tolerated_low_confidence(0.07) benign(0.136) TCGA-KQ-A41S-01 6 31584599 31584599 G C AIF1 Silent p.L122L 0.10 TCGA-KQ-A41S-01 6 34953014 34953014 G A ANKS1A Missense_Mutation p.E390K 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.65) TCGA-KQ-A41S-01 6 44122428 44122428 G C TMEM63B Splice_Site p.X770_splice 0.10 TCGA-KQ-A41S-01 6 44360561 44360561 C G CDC5L Missense_Mutation p.L103V 0.08 deleterious(0) probably_damaging(0.991) TCGA-KQ-A41S-01 6 55266654 55266654 C T GFRAL 3'UTR 0.15 TCGA-KQ-A41S-01 6 82909958 82909958 G A IBTK Silent p.F975F 0.10 TCGA-KQ-A41S-01 6 91257016 91257016 C T MAP3K7 Missense_Mutation p.D391N 0.11 tolerated(0.06) possibly_damaging(0.821) TCGA-KQ-A41S-01 7 103191699 103191699 C G RELN Silent p.V2039V 0.30 TCGA-KQ-A41S-01 7 126079148 126079148 C G GRM8 3'UTR 0.07 TCGA-KQ-A41S-01 7 142724023 142724023 G C OR9A2 Missense_Mutation p.S66C 0.11 deleterious(0.01) benign(0.167) TCGA-KQ-A41S-01 7 152549271 152549271 G A ACTR3B Missense_Mutation p.D338N 0.33 deleterious(0.02) probably_damaging(1) TCGA-KQ-A41S-01 7 156961752 156961752 G A UBE3C Missense_Mutation p.R44Q 0.06 tolerated(0.12) benign(0.063) TCGA-KQ-A41S-01 7 27196019 27196019 G A HOXA7 Missense_Mutation p.S49L 0.39 deleterious(0.04) benign(0.129) TCGA-KQ-A41S-01 7 50121408 50121408 G A ZPBP Missense_Mutation p.S99L 0.09 tolerated(0.8) benign(0.015) TCGA-KQ-A41S-01 7 7398306 7398306 G C COL28A1 Missense_Mutation p.F1112L 0.08 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41S-01 7 74563915 74563915 C T GTF2IRD2B Silent p.I554I 0.22 TCGA-KQ-A41S-01 7 74564077 74564077 C T GTF2IRD2B Silent p.I608I 0.34 TCGA-KQ-A41S-01 7 77649004 77649004 G C MAGI2 Silent p.P1332P 0.33 TCGA-KQ-A41S-01 7 86521058 86521058 G A KIAA1324L Silent p.L1004L 0.08 TCGA-KQ-A41S-01 7 98630667 98630667 G C SMURF1 Missense_Mutation p.H723D 0.27 deleterious(0) probably_damaging(0.989) TCGA-KQ-A41S-01 7 99654575 99654575 G A ZSCAN21 5'UTR 0.10 TCGA-KQ-A41S-01 7 99675042 99675042 G C ZNF3 5'UTR 0.07 TCGA-KQ-A41S-01 8 110530434 110530434 G T PKHD1L1 Nonsense_Mutation p.E3910* 0.18 TCGA-KQ-A41S-01 8 113599417 113599417 G C CSMD3 Missense_Mutation p.P1255A 0.06 deleterious(0) probably_damaging(0.977) TCGA-KQ-A41S-01 8 116599536 116599536 A T TRPS1 Missense_Mutation p.S798T 0.23 deleterious_low_confidence(0.02) benign(0.068) TCGA-KQ-A41S-01 8 122641338 122641338 C T HAS2 Silent p.L81L 0.04 TCGA-KQ-A41S-01 8 124360323 124360323 C T ATAD2 Intron 0.38 TCGA-KQ-A41S-01 8 141567305 141567305 C T AGO2 Silent p.T303T 0.44 TCGA-KQ-A41S-01 8 144411524 144411524 C T TOP1MT Missense_Mutation p.R119Q 0.07 tolerated(0.07) benign(0.213) TCGA-KQ-A41S-01 8 146171546 146171546 G C ZNF16 Nonsense_Mutation p.S16* 0.58 TCGA-KQ-A41S-01 8 22332639 22332639 G C PPP3CC Missense_Mutation p.M74I 0.11 tolerated(0.09) benign(0.044) TCGA-KQ-A41S-01 8 25167972 25167972 G C DOCK5 Missense_Mutation p.Q414H 0.06 deleterious(0.01) possibly_damaging(0.707) TCGA-KQ-A41S-01 8 27358515 27358515 C A EPHX2 Silent p.I58I 0.09 TCGA-KQ-A41S-01 8 2820893 2820893 G A CSMD1 Missense_Mutation p.P3102L 0.05 benign(0.002) TCGA-KQ-A41S-01 8 28304753 28304753 G A FBXO16 Nonsense_Mutation p.R260* 0.25 TCGA-KQ-A41S-01 8 41550342 41550342 G C ANK1 Missense_Mutation p.L1269V 0.06 tolerated(0.38) benign(0.007) TCGA-KQ-A41S-01 8 48731993 48731993 G A PRKDC Nonsense_Mutation p.Q3138* 0.11 TCGA-KQ-A41S-01 8 53555298 53555298 C G RB1CC1 Missense_Mutation p.L1354F 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-KQ-A41S-01 8 61773576 61773576 T G CHD7 Silent p.L2574L 0.15 TCGA-KQ-A41S-01 8 95518765 95518765 G C KIAA1429 Missense_Mutation p.L1354V 0.05 deleterious(0) probably_damaging(0.926) TCGA-KQ-A41S-01 9 109689515 109689515 G T ZNF462 Missense_Mutation p.D1108Y 0.08 possibly_damaging(0.896) TCGA-KQ-A41S-01 9 114490065 114490065 G A C9orf84 Missense_Mutation p.S497L 0.29 tolerated(0.18) probably_damaging(0.965) TCGA-KQ-A41S-01 9 126776374 126776374 C T LHX2 Silent p.L85L 0.12 TCGA-KQ-A41S-01 9 130830845 130830845 G A SLC25A25 Missense_Mutation p.E83K 0.14 tolerated(0.79) benign(0.006) TCGA-KQ-A41S-01 9 132687318 132687318 G C FNBP1 Missense_Mutation p.S303C 0.11 deleterious(0) benign(0.291) TCGA-KQ-A41S-01 9 140374852 140374852 G A PNPLA7 Missense_Mutation p.T831M 0.28 deleterious(0.01) possibly_damaging(0.884) TCGA-KQ-A41S-01 9 16419530 16419530 C T BNC2 Silent p.K919K 0.17 TCGA-KQ-A41S-01 9 19786537 19786537 C G SLC24A2 Missense_Mutation p.E110Q 0.30 tolerated(0.17) benign(0.194) TCGA-KQ-A41S-01 9 88916443 88916443 C T ZCCHC6 Missense_Mutation p.E1390K 0.11 deleterious(0) benign(0.219) TCGA-KQ-A41S-01 9 97522479 97522479 G C C9orf3 Silent p.G138G 0.04 TCGA-KQ-A41S-01 X 100497374 100497374 C T DRP2 Missense_Mutation p.H297Y 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-KQ-A41S-01 X 101768812 101768812 C T TMSB15A 3'UTR 0.33 TCGA-KQ-A41S-01 X 110406927 110406927 G A PAK3 Missense_Mutation p.M282I 0.22 tolerated(0.11) possibly_damaging(0.476) TCGA-KQ-A41S-01 X 112054509 112054509 C T AMOT Missense_Mutation p.R502Q 0.31 unknown(0) TCGA-KQ-A41S-01 X 120183010 120183010 C T GLUD2 Missense_Mutation p.A491V 0.13 tolerated(0.18) benign(0.004) TCGA-KQ-A41S-01 X 138669900 138669900 G C MCF2 Missense_Mutation p.Q909E 0.28 tolerated(0.36) benign(0.002) TCGA-KQ-A41S-01 X 153186824 153186824 G A ARHGAP4 Silent p.V143V 0.14 TCGA-KQ-A41S-01 X 153558140 153558140 C T TKTL1 3'UTR 0.48 TCGA-KQ-A41S-01 X 154225344 154225344 C T F8 Missense_Mutation p.E98K 0.19 deleterious(0) probably_damaging(0.997) TCGA-KQ-A41S-01 X 17095461 17095461 C G REPS2 Missense_Mutation p.R483G 0.11 deleterious(0) probably_damaging(1) TCGA-KQ-A41S-01 X 49084773 49084775 GAA - CACNA1F In_Frame_Del p.F318del 0.26 TCGA-KQ-A41S-01 X 53432589 53432589 C G SMC1A Missense_Mutation p.E583Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-KQ-A41S-01 X 70145681 70145681 G C SLC7A3 Silent p.L614L 0.46 TCGA-KQ-A41S-01 X 75650075 75650075 G C MAGEE1 Silent p.L584L 0.22 TCGA-KQ-A41S-01 X 75650121 75650121 G A MAGEE1 Missense_Mutation p.E600K 0.37 deleterious(0) probably_damaging(0.953) TCGA-KQ-A41S-01 X 75650127 75650127 G A MAGEE1 Missense_Mutation p.E602K 0.34 tolerated(0.09) benign(0.388) TCGA-KQ-A41S-01 X 76938032 76938032 C T ATRX Missense_Mutation p.D906N 0.14 benign(0.006) TCGA-KQ-A41S-01 X 96139912 96139912 C T RPA4 Silent p.I201I 0.12 TCGA-KQ-A41S-01 X 96171543 96171543 C A DIAPH2 Missense_Mutation p.S280Y 0.32 deleterious(0) unknown(0) TCGA-KQ-A41S-01 X 9707573 9707573 G C GPR143 Missense_Mutation p.Q358E 0.09 tolerated_low_confidence(1) benign(0.007) TCGA-LC-A66R-01 10 102045895 102045895 A T BLOC1S2 Missense_Mutation p.M44K 0.13 deleterious(0) probably_damaging(0.928) TCGA-LC-A66R-01 10 90045169 90045169 A T RNLS Missense_Mutation p.F324Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-LC-A66R-01 10 96612495 96612495 C T CYP2C19 Missense_Mutation p.R433W 0.12 deleterious(0.02) possibly_damaging(0.9) TCGA-LC-A66R-01 11 10785403 10785403 C G CTR9 Missense_Mutation p.Q391E 0.21 tolerated(0.26) benign(0.077) TCGA-LC-A66R-01 11 117375705 117375705 C G DSCAML1 Missense_Mutation p.A766P 0.21 tolerated(0.13) benign(0.059) TCGA-LC-A66R-01 11 118501996 118501996 G A PHLDB1 Missense_Mutation p.G634R 0.14 deleterious(0.05) probably_damaging(0.993) TCGA-LC-A66R-01 11 119599269 119599269 G A PVRL1 5'UTR 0.24 TCGA-LC-A66R-01 11 120327904 120327904 G C ARHGEF12 Missense_Mutation p.D712H 0.29 deleterious(0.04) possibly_damaging(0.786) TCGA-LC-A66R-01 11 121384861 121384861 G C SORL1 Missense_Mutation p.E348Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-LC-A66R-01 11 4411351 4411351 C G TRIM21 Missense_Mutation p.E97Q 0.20 deleterious(0.04) probably_damaging(0.942) TCGA-LC-A66R-01 11 55873295 55873295 T C OR8H2 Silent p.Y259Y 0.26 TCGA-LC-A66R-01 11 58920185 58920185 A G FAM111A Silent p.K348K 0.24 TCGA-LC-A66R-01 11 59369294 59369294 G T OSBP Silent p.L280L 0.23 TCGA-LC-A66R-01 11 64136986 64136986 G T RPS6KA4 Silent p.R499R 0.30 TCGA-LC-A66R-01 11 679780 679780 C A DEAF1 Missense_Mutation p.G345V 0.06 deleterious(0.04) possibly_damaging(0.901) TCGA-LC-A66R-01 11 83182702 83182702 C T DLG2 Missense_Mutation p.E805K 0.26 deleterious(0) probably_damaging(0.988) TCGA-LC-A66R-01 12 10228130 10228130 C T CLEC1A Missense_Mutation p.M172I 0.09 deleterious(0.02) possibly_damaging(0.609) TCGA-LC-A66R-01 12 107105270 107105270 C G RFX4 Nonsense_Mutation p.S334* 0.18 TCGA-LC-A66R-01 12 112184916 112184916 G T ACAD10 Missense_Mutation p.A805S 0.11 tolerated(0.1) benign(0.007) TCGA-LC-A66R-01 12 113730855 113730855 C G TPCN1 Missense_Mutation p.L816V 0.25 tolerated(0.16) benign(0.03) TCGA-LC-A66R-01 12 118599705 118599705 C A TAOK3 Missense_Mutation p.R676L 0.17 deleterious(0.02) benign(0.106) TCGA-LC-A66R-01 12 119568524 119568524 G A SRRM4 Missense_Mutation p.R219Q 0.29 tolerated_low_confidence(0.09) benign(0.006) TCGA-LC-A66R-01 12 122958565 122958565 C T ZCCHC8 Missense_Mutation p.E535K 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-LC-A66R-01 12 21011495 21011495 T G LST3 Missense_Mutation p.F117V 0.16 deleterious(0) probably_damaging(0.985) TCGA-LC-A66R-01 12 27156193 27156193 C G TM7SF3 Missense_Mutation p.Q74H 0.16 tolerated(0.12) possibly_damaging(0.467) TCGA-LC-A66R-01 12 27156246 27156246 C T TM7SF3 Missense_Mutation p.D57N 0.27 tolerated(1) benign(0) TCGA-LC-A66R-01 12 33560221 33560221 C A SYT10 Nonsense_Mutation p.E194* 0.06 TCGA-LC-A66R-01 12 46230744 46230744 C T ARID2 Silent p.G331G 0.13 TCGA-LC-A66R-01 12 49308297 49308297 C T CCDC65 Silent p.L137L 0.17 TCGA-LC-A66R-01 12 49951786 49951786 C T KCNH3 3'UTR 0.15 TCGA-LC-A66R-01 12 50035869 50035869 C G FMNL3 3'UTR 0.04 TCGA-LC-A66R-01 12 54427124 54427124 G C HOXC5 Missense_Mutation p.R73P 0.22 tolerated(0.39) possibly_damaging(0.776) TCGA-LC-A66R-01 12 55688924 55688924 G A OR6C6 Silent p.L31L 0.29 TCGA-LC-A66R-01 12 6879686 6879686 C G PTMS 3'UTR 0.15 TCGA-LC-A66R-01 12 6958137 6958137 G A CDCA3 3'UTR 0.26 TCGA-LC-A66R-01 13 110838840 110838840 G A COL4A1 Missense_Mutation p.R597C 0.14 benign(0.291) TCGA-LC-A66R-01 13 21331755 21331755 A T N6AMT2 Intron 0.07 TCGA-LC-A66R-01 13 37606001 37606001 T A SUPT20H Missense_Mutation p.N247Y 0.10 deleterious(0) possibly_damaging(0.897) TCGA-LC-A66R-01 13 42142408 42142408 G A VWA8 Silent p.F1881F 0.29 TCGA-LC-A66R-01 13 42876198 42876198 C T AKAP11 Silent p.L1106L 0.49 TCGA-LC-A66R-01 13 48937039 48937040 - A RB1 Frame_Shift_Ins p.D270Rfs*6 0.21 TCGA-LC-A66R-01 14 47504452 47504452 T G MDGA2 Silent p.G527G 0.23 TCGA-LC-A66R-01 14 75563807 75563816 GATGAGAATG - NEK9 Frame_Shift_Del p.I721Lfs*5 0.18 TCGA-LC-A66R-01 15 100672348 100672348 C T ADAMTS17 Missense_Mutation p.A529T 0.62 tolerated(0.09) benign(0.002) TCGA-LC-A66R-01 15 56144667 56144667 T G NEDD4 Silent p.V714V 0.41 TCGA-LC-A66R-01 15 85383427 85383427 G T ALPK3 Missense_Mutation p.R508I 0.37 deleterious(0) possibly_damaging(0.646) TCGA-LC-A66R-01 16 1262011 1262011 C G CACNA1H Missense_Mutation p.F1544L 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-LC-A66R-01 16 15029015 15029015 A G NPIPA1 5'Flank 0.31 TCGA-LC-A66R-01 16 20811624 20811624 C T ERI2 Silent p.K187K 0.11 TCGA-LC-A66R-01 16 20811644 20811644 C G ERI2 Missense_Mutation p.D181H 0.11 deleterious(0) probably_damaging(0.999) TCGA-LC-A66R-01 16 20811721 20811721 C G ERI2 Missense_Mutation p.W155S 0.15 deleterious(0) probably_damaging(0.995) TCGA-LC-A66R-01 16 20811725 20811725 C G ERI2 Splice_Site p.X154_splice 0.16 TCGA-LC-A66R-01 16 2203360 2203360 C T RAB26 Missense_Mutation p.R237C 0.42 deleterious(0) possibly_damaging(0.614) TCGA-LC-A66R-01 16 28855344 28855344 C T TUFM Missense_Mutation p.R334Q 0.42 deleterious(0) possibly_damaging(0.747) TCGA-LC-A66R-01 16 51174835 51174835 A G SALL1 Missense_Mutation p.V433A 0.09 tolerated(0.07) benign(0.027) TCGA-LC-A66R-01 16 66600601 66600601 A G CMTM1 Missense_Mutation p.Q62R 0.10 tolerated(0.63) benign(0.001) TCGA-LC-A66R-01 16 89851292 89851292 G A FANCA Silent p.L480L 0.22 TCGA-LC-A66R-01 17 10356627 10356627 C G MYH4 Missense_Mutation p.E985Q 0.07 deleterious(0.01) possibly_damaging(0.833) TCGA-LC-A66R-01 17 1637095 1637095 G C WDR81 Silent p.V1588V 0.10 TCGA-LC-A66R-01 17 30687671 30687671 C G ZNF207 Missense_Mutation p.S121C 0.20 deleterious(0.05) possibly_damaging(0.843) TCGA-LC-A66R-01 17 47696435 47696435 C G SPOP Missense_Mutation p.D130H 0.09 tolerated(0.13) probably_damaging(1) TCGA-LC-A66R-01 17 59490091 59490091 G A C17orf82 Silent p.%3D 0.50 TCGA-LC-A66R-01 17 5984015 5984015 C T WSCD1 Missense_Mutation p.R13C 0.44 deleterious(0.01) possibly_damaging(0.808) TCGA-LC-A66R-01 17 72997467 72997467 A T CDR2L Missense_Mutation p.H75L 0.38 deleterious(0.03) benign(0.001) TCGA-LC-A66R-01 17 72997468 72997468 C T CDR2L Silent p.H75H 0.37 TCGA-LC-A66R-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.54 TCGA-LC-A66R-01 17 79827105 79827105 C T ARHGDIA Missense_Mutation p.R120Q 0.46 tolerated(0.05) benign(0.008) TCGA-LC-A66R-01 17 80788322 80788322 G C ZNF750 Missense_Mutation p.A623G 0.13 tolerated(0.37) benign(0.138) TCGA-LC-A66R-01 18 22806740 22806740 C A ZNF521 Missense_Mutation p.R381L 0.19 tolerated(0.09) possibly_damaging(0.603) TCGA-LC-A66R-01 18 42530797 42530797 C T SETBP1 Missense_Mutation p.R498W 0.37 deleterious(0) probably_damaging(0.923) TCGA-LC-A66R-01 18 54629745 54629745 G A WDR7 Silent p.R1383R 0.26 TCGA-LC-A66R-01 19 12490679 12490679 G A CTD-3105H18.14 3'UTR 0.32 TCGA-LC-A66R-01 19 12491175 12491175 G A CTD-3105H18.14 3'UTR 0.42 TCGA-LC-A66R-01 19 12491265 12491265 G C CTD-3105H18.14 3'UTR 0.41 TCGA-LC-A66R-01 19 12502086 12502086 G C ZNF799 Missense_Mutation p.H376D 0.06 tolerated(0.2) possibly_damaging(0.794) TCGA-LC-A66R-01 19 18391386 18391386 G C JUND Silent p.L303L 0.14 TCGA-LC-A66R-01 19 18468380 18468380 C T PGPEP1 Missense_Mutation p.T131M 0.13 tolerated(0.07) benign(0.425) TCGA-LC-A66R-01 19 2933519 2933519 G A ZNF77 Nonsense_Mutation p.Q536* 0.39 TCGA-LC-A66R-01 19 34180111 34180111 C T CHST8 5'UTR 0.34 TCGA-LC-A66R-01 19 438725 438725 G A SHC2 Missense_Mutation p.T238M 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-LC-A66R-01 19 54175242 54175242 G T MIR1323 RNA 0.42 TCGA-LC-A66R-01 19 57022912 57022912 C T ZNF471 5'UTR 0.33 TCGA-LC-A66R-01 19 57035986 57035986 A T ZNF471 Nonsense_Mutation p.K184* 0.35 TCGA-LC-A66R-01 1 149398970 149398970 G C HIST2H3PS2 3'Flank 0.36 TCGA-LC-A66R-01 1 149859143 149859143 G C HIST2H2AB Silent p.V108V 0.32 TCGA-LC-A66R-01 1 158227281 158227281 G A CD1A Silent p.A318A 0.41 TCGA-LC-A66R-01 1 179638434 179638434 G C TDRD5 Missense_Mutation p.E919Q 0.11 deleterious(0.01) probably_damaging(0.92) TCGA-LC-A66R-01 1 192321329 192321329 G A RGS21 Missense_Mutation p.D81N 0.15 tolerated(0.07) benign(0.032) TCGA-LC-A66R-01 1 200974018 200974018 G C KIF21B Missense_Mutation p.S259W 0.41 deleterious(0.02) possibly_damaging(0.668) TCGA-LC-A66R-01 1 201982985 201982985 C A ELF3 Missense_Mutation p.F278L 0.19 deleterious(0) probably_damaging(0.998) TCGA-LC-A66R-01 1 208213011 208213011 C T PLXNA2 Silent p.L1485L 0.37 TCGA-LC-A66R-01 1 212988523 212988523 C A TATDN3 3'UTR 0.17 TCGA-LC-A66R-01 1 243419506 243419506 G C SDCCAG8 Missense_Mutation p.E11Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-LC-A66R-01 1 27094347 27094347 G C ARID1A Missense_Mutation p.E1019Q 0.27 unknown(0) TCGA-LC-A66R-01 1 27094386 27094386 G T ARID1A Nonsense_Mutation p.E1032* 0.29 TCGA-LC-A66R-01 1 39906953 39906953 G C MACF1 Missense_Mutation p.E4151Q 0.13 probably_damaging(0.979) TCGA-LC-A66R-01 1 45101635 45101635 G A RNF220 Intron 0.29 TCGA-LC-A66R-01 1 89323141 89323141 T C GTF2B Missense_Mutation p.K189E 0.17 deleterious(0) probably_damaging(0.952) TCGA-LC-A66R-01 20 278918 278918 G A ZCCHC3 Missense_Mutation p.E231K 0.27 deleterious(0.02) benign(0.026) TCGA-LC-A66R-01 20 32868841 32868841 C A AHCY Nonstop_Mutation p.*433Lext*45 0.09 TCGA-LC-A66R-01 20 32868906 32868906 C G AHCY Missense_Mutation p.E411D 0.18 tolerated_low_confidence(0.5) benign(0.001) TCGA-LC-A66R-01 20 33026365 33026365 C G ITCH Nonsense_Mutation p.S244* 0.25 TCGA-LC-A66R-01 20 34285617 34285617 G A NFS1 Missense_Mutation p.R105C 0.17 deleterious(0.01) possibly_damaging(0.717) TCGA-LC-A66R-01 20 61525865 61525865 C T DIDO1 Silent p.K824K 0.23 TCGA-LC-A66R-01 22 30050650 30050651 - T NF2 Frame_Shift_Ins p.D152* 0.36 TCGA-LC-A66R-01 22 30689980 30689980 G T TBC1D10A Missense_Mutation p.F282L 0.45 deleterious(0) probably_damaging(0.994) TCGA-LC-A66R-01 22 44601699 44601699 C G PARVG Silent p.V292V 0.53 TCGA-LC-A66R-01 2 152348793 152348793 C A NEB Silent p.V8292V 0.24 TCGA-LC-A66R-01 2 160980337 160980337 C T ITGB6 Missense_Mutation p.C649Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-LC-A66R-01 2 175614780 175614780 A C CHRNA1 Missense_Mutation p.L324R 0.09 deleterious(0) probably_damaging(1) TCGA-LC-A66R-01 2 179440003 179440003 C T TTN Missense_Mutation p.S23619N 0.17 TCGA-LC-A66R-01 2 179497373 179497373 C T TTN Missense_Mutation p.E14454K 0.15 TCGA-LC-A66R-01 2 237489376 237489376 G T ACKR3 Missense_Mutation p.D90Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-LC-A66R-01 2 31178531 31178531 C G GALNT14 Missense_Mutation p.E208Q 0.11 deleterious(0) probably_damaging(0.967) TCGA-LC-A66R-01 2 32818979 32818979 C G BIRC6 Intron 0.28 TCGA-LC-A66R-01 2 42281257 42281257 C T PKDCC Missense_Mutation p.R282W 0.36 deleterious(0) probably_damaging(0.99) TCGA-LC-A66R-01 2 42556041 42556041 G T EML4 Missense_Mutation p.G786V 0.09 deleterious(0.01) possibly_damaging(0.589) TCGA-LC-A66R-01 2 47672769 47672769 G A MSH2 Missense_Mutation p.M453I 0.24 deleterious(0.02) benign(0.047) TCGA-LC-A66R-01 2 61182191 61182191 G C PUS10 Missense_Mutation p.S340C 0.09 deleterious(0) probably_damaging(0.999) TCGA-LC-A66R-01 2 70015206 70015206 C T ANXA4 Silent p.V10V 0.07 TCGA-LC-A66R-01 2 73993721 73993721 C T DUSP11 Silent p.K253K 0.28 TCGA-LC-A66R-01 2 80097051 80097051 G A CTNNA2 Missense_Mutation p.R192K 0.09 tolerated(1) benign(0.003) TCGA-LC-A66R-01 2 85823766 85823766 C T RNF181 Nonsense_Mutation p.Q71* 0.13 TCGA-LC-A66R-01 3 129140523 129140523 C T EFCAB12 Missense_Mutation p.R58Q 0.22 deleterious(0) probably_damaging(0.951) TCGA-LC-A66R-01 3 1337429 1337429 A C CNTN6 Missense_Mutation p.N200T 0.10 deleterious(0.04) possibly_damaging(0.811) TCGA-LC-A66R-01 3 141161888 141161888 G A ZBTB38 Missense_Mutation p.E220K 0.26 deleterious(0) probably_damaging(0.913) TCGA-LC-A66R-01 3 179341899 179341899 T G NDUFB5 3'UTR 0.43 TCGA-LC-A66R-01 3 5229929 5229929 G A EDEM1 Missense_Mutation p.A147T 0.52 tolerated(0.22) benign(0.016) TCGA-LC-A66R-01 3 77671445 77671445 T C ROBO2 Silent p.L1224L 0.23 TCGA-LC-A66R-01 3 97185302 97185302 G T EPHA6 Intron 0.24 TCGA-LC-A66R-01 3 9739403 9739403 A G MTMR14 Missense_Mutation p.D541G 0.21 tolerated(0.27) probably_damaging(0.956) TCGA-LC-A66R-01 3 98189028 98189028 C G OR5K1 Nonsense_Mutation p.S203* 0.12 TCGA-LC-A66R-01 4 13605172 13605172 C A BOD1L1 Nonsense_Mutation p.E1118* 0.23 TCGA-LC-A66R-01 4 153273871 153273871 C T FBXW7 Intron 0.25 TCGA-LC-A66R-01 4 156278611 156278611 C T MAP9 Missense_Mutation p.A371T 0.13 deleterious(0.03) probably_damaging(0.953) TCGA-LC-A66R-01 4 68504829 68504829 T C UBA6 Missense_Mutation p.Y523C 0.14 tolerated(0.18) benign(0.003) TCGA-LC-A66R-01 4 77288669 77288669 C T CCDC158 Silent p.L536L 0.10 TCGA-LC-A66R-01 5 112349146 112349146 G A DCP2 Missense_Mutation p.D410N 0.13 tolerated_low_confidence(0.09) probably_damaging(1) TCGA-LC-A66R-01 5 1322999 1322999 G A CLPTM1L Silent p.F436F 0.23 TCGA-LC-A66R-01 5 134011753 134011753 G A SEC24A Missense_Mutation p.A398T 0.16 tolerated(0.07) benign(0.005) TCGA-LC-A66R-01 5 138643614 138643614 A - MATR3 Frame_Shift_Del p.Y171Tfs*54 0.27 TCGA-LC-A66R-01 5 140175415 140175415 T C PCDHA2 Missense_Mutation p.I289T 0.26 tolerated_low_confidence(0.23) benign(0.003) TCGA-LC-A66R-01 5 140563170 140563170 C T PCDHB16 Nonsense_Mutation p.Q346* 0.13 TCGA-LC-A66R-01 5 145383695 145383695 C T SH3RF2 Silent p.I241I 0.22 TCGA-LC-A66R-01 5 145493514 145493514 G A LARS 3'UTR 0.44 TCGA-LC-A66R-01 5 145493665 145493665 G C LARS 3'UTR 0.28 TCGA-LC-A66R-01 5 156915420 156915420 C T ADAM19 Silent p.G801G 0.25 TCGA-LC-A66R-01 5 179192708 179192708 G A MAML1 Missense_Mutation p.G233S 0.29 tolerated(0.85) benign(0.303) TCGA-LC-A66R-01 6 143816769 143816769 A C FUCA2 3'UTR 0.67 TCGA-LC-A66R-01 6 146351161 146351161 C G GRM1 Missense_Mutation p.Q170E 0.30 deleterious(0) possibly_damaging(0.895) TCGA-LC-A66R-01 6 149893686 149893686 A G GINM1 Missense_Mutation p.N75S 0.24 deleterious(0) benign(0.065) TCGA-LC-A66R-01 6 18122747 18122747 C G NHLRC1 Missense_Mutation p.E31Q 0.30 deleterious(0) probably_damaging(1) TCGA-LC-A66R-01 6 18122786 18122786 C G NHLRC1 Missense_Mutation p.E18Q 0.28 tolerated(0.06) possibly_damaging(0.831) TCGA-LC-A66R-01 6 27879693 27879693 G A OR2B2 Silent p.I135I 0.33 TCGA-LC-A66R-01 6 31914364 31914364 C G CFB Silent p.V595V 0.25 TCGA-LC-A66R-01 6 43160906 43160906 A G CUL9 Missense_Mutation p.E783G 0.10 deleterious(0) probably_damaging(0.993) TCGA-LC-A66R-01 6 75892916 75892916 G A COL12A1 Missense_Mutation p.R581C 0.25 probably_damaging(0.999) TCGA-LC-A66R-01 6 82882105 82882105 G C IBTK Missense_Mutation p.L1308V 0.11 deleterious(0.01) possibly_damaging(0.696) TCGA-LC-A66R-01 7 100683691 100683691 G A MUC17 Silent p.P2998P 0.33 TCGA-LC-A66R-01 7 103113313 103113313 A G RELN Silent p.H3443H 0.32 TCGA-LC-A66R-01 7 154735934 154735934 G C PAXIP1-AS2 3'UTR 0.33 TCGA-LC-A66R-01 7 36447412 36447412 G A ANLN Missense_Mutation p.E315K 0.22 tolerated(0.23) probably_damaging(0.986) TCGA-LC-A66R-01 7 50467675 50467675 G C IKZF1 Missense_Mutation p.E262Q 0.20 deleterious(0.01) possibly_damaging(0.558) TCGA-LC-A66R-01 7 72892644 72892644 G C BAZ1B Missense_Mutation p.H383D 0.14 tolerated_low_confidence(0.71) benign(0.035) TCGA-LC-A66R-01 7 73114794 73114794 G A STX1A Silent p.I270I 0.08 TCGA-LC-A66R-01 7 74211622 74211622 T A GTF2IRD2 Missense_Mutation p.Q743H 0.15 tolerated(0.11) probably_damaging(0.997) TCGA-LC-A66R-01 7 99017563 99017563 G A ATP5J2-PTCD1 3'UTR 0.34 TCGA-LC-A66R-01 8 116599410 116599410 G C TRPS1 Missense_Mutation p.L840V 0.03 tolerated_low_confidence(0.15) possibly_damaging(0.694) TCGA-LC-A66R-01 8 133723114 133723114 C T TMEM71 3'UTR 0.23 TCGA-LC-A66R-01 8 39007313 39007313 C G ADAM32 Missense_Mutation p.Q94E 0.18 tolerated(0.28) benign(0.096) TCGA-LC-A66R-01 8 69143632 69143632 C T PREX2 3'UTR 0.21 TCGA-LC-A66R-01 8 96166329 96166329 A C PLEKHF2 Missense_Mutation p.E19D 0.06 deleterious(0) probably_damaging(0.948) TCGA-LC-A66R-01 8 99129313 99129313 C A HRSP12 Missense_Mutation p.L4F 0.30 deleterious(0.05) benign(0.006) TCGA-LC-A66R-01 9 100839226 100839226 G A NANS Silent p.L125L 0.25 TCGA-LC-A66R-01 9 104335518 104335518 C G GRIN3A Missense_Mutation p.A1096P 0.19 deleterious(0) possibly_damaging(0.776) TCGA-LC-A66R-01 9 106892090 106892090 G A SMC2 Missense_Mutation p.M985I 0.22 deleterious(0.04) benign(0.027) TCGA-LC-A66R-01 9 125239456 125239456 G C OR1J1 Missense_Mutation p.I250M 0.13 deleterious_low_confidence(0.01) benign(0.032) TCGA-LC-A66R-01 9 134348963 134348963 T C PRRC2B Missense_Mutation p.C726R 0.16 tolerated(0.26) benign(0.023) TCGA-LC-A66R-01 9 139564626 139564626 G A EGFL7 Missense_Mutation p.D139N 0.23 deleterious(0.01) probably_damaging(1) TCGA-LC-A66R-01 9 26892630 26892630 G C CAAP1 Missense_Mutation p.I28M 0.14 tolerated_low_confidence(0.14) unknown(0) TCGA-LC-A66R-01 9 32784716 32784716 G A TMEM215 Missense_Mutation p.V179I 0.17 tolerated(0.11) benign(0.012) TCGA-LC-A66R-01 9 73002602 73002602 C A KLF9 3'UTR 0.40 TCGA-LC-A66R-01 9 77377183 77377183 G A TRPM6 Silent p.I1468I 0.17 TCGA-LC-A66R-01 9 8499808 8499808 C G PTPRD Missense_Mutation p.E721Q 0.31 tolerated(0.1) probably_damaging(0.95) TCGA-LC-A66R-01 9 95481387 95481387 C T BICD2 Missense_Mutation p.G514S 0.24 tolerated(0.74) possibly_damaging(0.758) TCGA-LC-A66R-01 9 98011414 98011414 C G FANCC Missense_Mutation p.E54Q 0.28 tolerated(0.11) benign(0.09) TCGA-LC-A66R-01 X 108641908 108641908 A G GUCY2F Silent p.P715P 0.07 TCGA-LC-A66R-01 X 139047628 139047628 A G CXorf66 Silent p.L10L 0.46 TCGA-LC-A66R-01 X 92964788 92964788 G A FAM133A Missense_Mutation p.E124K 0.42 tolerated_low_confidence(0.19) unknown(0) TCGA-LT-A5Z6-01 10 101716994 101716994 C A DNMBP Intron 0.53 TCGA-LT-A5Z6-01 10 115348597 115348597 G T NRAP 3'UTR 0.21 TCGA-LT-A5Z6-01 10 115534607 115534607 G A PLEKHS1 Missense_Mutation p.E262K 0.19 tolerated(0.5) benign(0.051) TCGA-LT-A5Z6-01 10 12142213 12142213 G C DHTKD1 Missense_Mutation p.D570H 0.46 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 10 129905099 129905099 C G MKI67 Missense_Mutation p.D1669H 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-LT-A5Z6-01 10 13151138 13151138 C T OPTN Missense_Mutation p.L6F 0.09 tolerated(0.07) possibly_damaging(0.653) TCGA-LT-A5Z6-01 10 27389293 27389293 C T ANKRD26 5'UTR 0.51 TCGA-LT-A5Z6-01 10 27389313 27389313 C T ANKRD26 5'UTR 0.51 TCGA-LT-A5Z6-01 10 29812651 29812651 C T SVIL Silent p.E964E 0.05 TCGA-LT-A5Z6-01 10 3207607 3207607 G C PITRM1 Missense_Mutation p.F177L 0.42 deleterious(0) probably_damaging(0.919) TCGA-LT-A5Z6-01 10 43610065 43610065 G A RET Missense_Mutation p.E673K 0.22 tolerated(0.26) benign(0.21) TCGA-LT-A5Z6-01 10 445109 445109 G C DIP2C Missense_Mutation p.F400L 0.13 deleterious(0.01) probably_damaging(0.963) TCGA-LT-A5Z6-01 10 46121601 46121601 G A ZFAND4 Missense_Mutation p.S557F 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-LT-A5Z6-01 10 50944219 50944219 G C OGDHL Missense_Mutation p.S920C 0.29 tolerated(0.28) benign(0.003) TCGA-LT-A5Z6-01 10 5202091 5202091 G A AKR1CL1 3'Flank 0.60 TCGA-LT-A5Z6-01 10 5929981 5929981 C G ANKRD16 Missense_Mutation p.E122Q 0.11 tolerated(0.43) benign(0.431) TCGA-LT-A5Z6-01 10 61666124 61666124 G A CCDC6 Missense_Mutation p.S20L 0.12 tolerated_low_confidence(0.23) benign(0.014) TCGA-LT-A5Z6-01 10 70520899 70520899 G C CCAR1 Missense_Mutation p.E686Q 0.31 tolerated(0.15) probably_damaging(0.932) TCGA-LT-A5Z6-01 10 71026397 71026397 G T HKDC1 Nonsense_Mutation p.E880* 0.09 TCGA-LT-A5Z6-01 10 73453936 73453936 G A CDH23 Missense_Mutation p.E329K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-LT-A5Z6-01 10 75290465 75290465 C T USP54 Missense_Mutation p.E482K 0.34 deleterious(0.02) probably_damaging(0.986) TCGA-LT-A5Z6-01 10 7708883 7708883 G A ITIH5 5'UTR 0.39 TCGA-LT-A5Z6-01 10 82043703 82043703 G A MAT1A Silent p.I87I 0.11 TCGA-LT-A5Z6-01 10 85974123 85974123 G A CDHR1 Missense_Mutation p.E776K 0.08 tolerated_low_confidence(0.17) benign(0.013) TCGA-LT-A5Z6-01 10 88988193 88988193 C A NUTM2A Missense_Mutation p.L186M 0.33 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 10 89720732 89720732 C G PTEN Missense_Mutation p.L295V 0.19 tolerated(0.46) benign(0.004) TCGA-LT-A5Z6-01 10 89720741 89720741 C T PTEN Nonsense_Mutation p.Q298* 0.19 TCGA-LT-A5Z6-01 10 94708041 94708041 G A EXOC6 Missense_Mutation p.E441K 0.53 tolerated(0.09) benign(0.206) TCGA-LT-A5Z6-01 11 105481745 105481745 G A GRIA4 Silent p.Q7Q 0.35 TCGA-LT-A5Z6-01 11 106810845 106810845 G A GUCY1A2 Missense_Mutation p.H183Y 0.11 deleterious(0) benign(0.025) TCGA-LT-A5Z6-01 11 114320759 114320759 C G REXO2 3'UTR 0.12 TCGA-LT-A5Z6-01 11 117864791 117864791 G A IL10RA Silent p.V205V 0.12 TCGA-LT-A5Z6-01 11 118772999 118772999 C T BCL9L Missense_Mutation p.E485K 0.06 possibly_damaging(0.85) TCGA-LT-A5Z6-01 11 119185941 119185941 C T MCAM Missense_Mutation p.E34K 0.51 tolerated(0.07) possibly_damaging(0.676) TCGA-LT-A5Z6-01 11 119228517 119228517 C T USP2 Missense_Mutation p.R484Q 0.09 deleterious(0.02) possibly_damaging(0.881) TCGA-LT-A5Z6-01 11 119599210 119599210 G A PVRL1 Silent p.L18L 0.36 TCGA-LT-A5Z6-01 11 124294745 124294745 G A OR8B4 Missense_Mutation p.S8L 0.05 tolerated_low_confidence(0.68) benign(0.003) TCGA-LT-A5Z6-01 11 125880392 125880392 C T CDON Missense_Mutation p.E466K 0.08 tolerated(0.58) benign(0.008) TCGA-LT-A5Z6-01 11 130343077 130343077 C T ADAMTS15 Silent p.N738N 0.20 TCGA-LT-A5Z6-01 11 134217013 134217013 G A GLB1L2 Intron 0.50 TCGA-LT-A5Z6-01 11 14512189 14512189 C T COPB1 Silent p.L176L 0.22 TCGA-LT-A5Z6-01 11 1475755 1475755 G C BRSK2 Missense_Mutation p.E575Q 0.50 deleterious(0.01) possibly_damaging(0.886) TCGA-LT-A5Z6-01 11 15260550 15260550 G T INSC Missense_Mutation p.Q488H 0.08 tolerated(0.08) probably_damaging(1) TCGA-LT-A5Z6-01 11 17111392 17111392 G C PIK3C2A Missense_Mutation p.L1652V 0.41 tolerated(0.11) probably_damaging(0.999) TCGA-LT-A5Z6-01 11 1778565 1778565 G C CTSD Missense_Mutation p.F231L 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-LT-A5Z6-01 11 18765660 18765660 G A PTPN5 Missense_Mutation p.P62S 0.10 tolerated_low_confidence(0.33) benign(0.005) TCGA-LT-A5Z6-01 11 20117287 20117287 G A NAV2 Missense_Mutation p.D2055N 0.10 deleterious(0) probably_damaging(0.993) TCGA-LT-A5Z6-01 11 2417887 2417887 C T CD81 Silent p.L197L 0.05 TCGA-LT-A5Z6-01 11 3685489 3685489 C T ART1 3'UTR 0.08 TCGA-LT-A5Z6-01 11 4045120 4045120 C G STIM1 Silent p.L96L 0.11 TCGA-LT-A5Z6-01 11 45672162 45672162 G A CHST1 Silent p.F104F 0.10 TCGA-LT-A5Z6-01 11 57088079 57088079 G A TNKS1BP1 Missense_Mutation p.P68S 0.24 deleterious(0.01) probably_damaging(1) TCGA-LT-A5Z6-01 11 57886766 57886766 C A OR9I1 Missense_Mutation p.V51L 0.11 tolerated(0.75) benign(0.003) TCGA-LT-A5Z6-01 11 5809764 5809764 C T OR52N1 Missense_Mutation p.D95N 0.41 tolerated(0.45) benign(0.003) TCGA-LT-A5Z6-01 11 58125941 58125941 G C OR5B17 Nonsense_Mutation p.S201* 0.38 TCGA-LT-A5Z6-01 11 60269474 60269474 C G MS4A12 Missense_Mutation p.L145V 0.07 deleterious(0.01) probably_damaging(0.94) TCGA-LT-A5Z6-01 11 60971712 60971712 G C PGA3 Missense_Mutation p.D64H 0.35 tolerated(0.06) benign(0.002) TCGA-LT-A5Z6-01 11 61250124 61250124 C A PPP1R32 Intron 0.11 TCGA-LT-A5Z6-01 11 62346135 62346135 G C TUT1 Missense_Mutation p.P391R 0.09 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 11 65729273 65729273 C T SART1 Missense_Mutation p.R8C 0.42 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-LT-A5Z6-01 11 65786339 65786339 C T CATSPER1 Silent p.L720L 0.36 TCGA-LT-A5Z6-01 11 6592102 6592102 C T DNHD1 Nonsense_Mutation p.Q4454* 0.10 TCGA-LT-A5Z6-01 11 71948538 71948538 G A INPPL1 Missense_Mutation p.E1084K 0.11 tolerated(0.36) benign(0.292) TCGA-LT-A5Z6-01 11 77378139 77378139 C G RSF1 Missense_Mutation p.L1383F 0.42 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-LT-A5Z6-01 11 792052 792052 C T SLC25A22 Missense_Mutation p.E279K 0.47 deleterious(0.01) probably_damaging(1) TCGA-LT-A5Z6-01 11 89413797 89413797 G C FOLH1B RNA 0.45 TCGA-LT-A5Z6-01 11 94230041 94230041 A G ANKRD49 Missense_Mutation p.E61G 0.16 deleterious(0.02) probably_damaging(0.977) TCGA-LT-A5Z6-01 11 9761758 9761758 C T SWAP70 Nonsense_Mutation p.Q407* 0.10 TCGA-LT-A5Z6-01 11 99715957 99715957 G C CNTN5 Silent p.G180G 0.08 TCGA-LT-A5Z6-01 12 105198909 105198909 G C SLC41A2 3'UTR 0.26 TCGA-LT-A5Z6-01 12 106903237 106903237 C T POLR3B Silent p.L1104L 0.06 TCGA-LT-A5Z6-01 12 11286433 11286433 C G TAS2R30 Missense_Mutation p.L137F 0.29 tolerated(0.21) benign(0.331) TCGA-LT-A5Z6-01 12 113744301 113744301 G A SLC8B1 Silent p.F497F 0.09 TCGA-LT-A5Z6-01 12 117423070 117423070 G A FBXW8 Missense_Mutation p.D299N 0.25 tolerated(0.71) benign(0.01) TCGA-LT-A5Z6-01 12 118590200 118590200 C G TAOK3 Missense_Mutation p.E789D 0.11 tolerated(0.06) benign(0.178) TCGA-LT-A5Z6-01 12 118627644 118627644 C T TAOK3 Missense_Mutation p.E433K 0.07 tolerated(0.21) benign(0.018) TCGA-LT-A5Z6-01 12 118627646 118627646 C T TAOK3 Missense_Mutation p.R432K 0.07 tolerated(0.12) benign(0.027) TCGA-LT-A5Z6-01 12 12022774 12022774 G A ETV6 Missense_Mutation p.E294K 0.11 tolerated(0.13) possibly_damaging(0.484) TCGA-LT-A5Z6-01 12 122750907 122750907 C G VPS33A Missense_Mutation p.E17Q 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-LT-A5Z6-01 12 123201304 123201304 G C HCAR3 5'UTR 0.33 TCGA-LT-A5Z6-01 12 125609254 125609254 C G AACS Missense_Mutation p.I375M 0.51 tolerated(0.06) probably_damaging(0.983) TCGA-LT-A5Z6-01 12 130648384 130648384 C T FZD10 Silent p.V299V 0.53 TCGA-LT-A5Z6-01 12 132198698 132198698 G A SFSWAP Missense_Mutation p.E101K 0.11 deleterious(0.01) possibly_damaging(0.805) TCGA-LT-A5Z6-01 12 133210942 133210942 C A POLE Missense_Mutation p.G1945V 0.07 tolerated(0.25) benign(0.001) TCGA-LT-A5Z6-01 12 14689623 14689623 G A PLBD1 Nonsense_Mutation p.Q194* 0.37 TCGA-LT-A5Z6-01 12 25254119 25254119 G A LRMP Missense_Mutation p.R250Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 12 28460636 28460636 A G CCDC91 Missense_Mutation p.K177R 0.38 deleterious(0.04) benign(0.088) TCGA-LT-A5Z6-01 12 42787414 42787414 G A PPHLN1 Missense_Mutation p.E231K 0.44 deleterious(0.04) possibly_damaging(0.83) TCGA-LT-A5Z6-01 12 42840065 42840065 C T PPHLN1 Silent p.L441L 0.40 TCGA-LT-A5Z6-01 12 48370928 48370928 C T COL2A1 Missense_Mutation p.G1095D 0.15 unknown(0) TCGA-LT-A5Z6-01 12 48539628 48539628 C T PFKM 3'UTR 0.30 TCGA-LT-A5Z6-01 12 51318935 51318935 C T METTL7A Silent p.Y38Y 0.09 TCGA-LT-A5Z6-01 12 53685507 53685507 C G ESPL1 Missense_Mutation p.Q1852E 0.31 tolerated(0.18) benign(0.013) TCGA-LT-A5Z6-01 12 53685629 53685629 C G ESPL1 Silent p.V1892V 0.29 TCGA-LT-A5Z6-01 12 54635457 54635457 G C CBX5 3'UTR 0.38 TCGA-LT-A5Z6-01 12 58022592 58022592 G C B4GALNT1 Missense_Mutation p.F302L 0.05 deleterious(0.01) probably_damaging(0.976) TCGA-LT-A5Z6-01 12 63994160 63994160 G C DPY19L2 Missense_Mutation p.Q429E 0.34 tolerated(0.14) benign(0.123) TCGA-LT-A5Z6-01 12 6439066 6439066 C G TNFRSF1A Missense_Mutation p.R312T 0.33 tolerated(0.27) benign(0.03) TCGA-LT-A5Z6-01 12 69968639 69968639 G C FRS2 Missense_Mutation p.E477D 0.09 tolerated(0.17) probably_damaging(0.991) TCGA-LT-A5Z6-01 12 70933724 70933724 C A PTPRB Missense_Mutation p.Q1891H 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-LT-A5Z6-01 12 72866946 72866946 C G TRHDE Missense_Mutation p.P479A 0.07 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 12 7559342 7559342 C T CD163L1 Nonsense_Mutation p.W291* 0.09 TCGA-LT-A5Z6-01 12 7585179 7585179 G T CD163L1 Missense_Mutation p.S200Y 0.06 deleterious(0.02) probably_damaging(0.99) TCGA-LT-A5Z6-01 12 76443489 76443489 C T NAP1L1 Intron 0.14 TCGA-LT-A5Z6-01 12 88379792 88379792 G C C12orf50 Missense_Mutation p.H321D 0.12 deleterious(0) benign(0.234) TCGA-LT-A5Z6-01 12 96370446 96370446 C G HAL Missense_Mutation p.E565Q 0.44 deleterious(0.01) possibly_damaging(0.897) TCGA-LT-A5Z6-01 13 103492110 103492110 C T BIVM-ERCC5 Silent p.F441F 0.28 TCGA-LT-A5Z6-01 13 108518203 108518203 G C FAM155A Missense_Mutation p.L248V 0.29 tolerated(0.05) probably_damaging(0.99) TCGA-LT-A5Z6-01 13 111156608 111156608 G C COL4A2 Missense_Mutation p.E1467Q 0.26 unknown(0) TCGA-LT-A5Z6-01 13 114817554 114817554 C G RASA3 Missense_Mutation p.D84H 0.33 deleterious(0.01) probably_damaging(0.914) TCGA-LT-A5Z6-01 13 23907978 23907978 G T SACS Missense_Mutation p.P3346H 0.07 possibly_damaging(0.809) TCGA-LT-A5Z6-01 13 25480238 25480238 C G CENPJ Missense_Mutation p.E646D 0.45 tolerated(0.3) benign(0.02) TCGA-LT-A5Z6-01 13 28979931 28979931 C T FLT1 Missense_Mutation p.E513K 0.05 tolerated(0.06) benign(0.118) TCGA-LT-A5Z6-01 13 32799998 32799998 C G FRY Missense_Mutation p.S1698C 0.36 tolerated(0.15) benign(0.196) TCGA-LT-A5Z6-01 13 33591259 33591259 C T KL Silent p.F227F 0.43 TCGA-LT-A5Z6-01 13 39265349 39265349 A T FREM2 Nonsense_Mutation p.K1290* 0.39 TCGA-LT-A5Z6-01 13 41835046 41835046 C G MTRF1 5'UTR 0.42 TCGA-LT-A5Z6-01 13 46679179 46679179 G A CPB2 5'Flank 0.24 TCGA-LT-A5Z6-01 13 77673121 77673121 G A MYCBP2 Missense_Mutation p.S2685F 0.08 benign(0.051) TCGA-LT-A5Z6-01 13 77673132 77673132 G C MYCBP2 Missense_Mutation p.I2681M 0.08 benign(0.001) TCGA-LT-A5Z6-01 13 94482574 94482574 G A GPC6 Missense_Mutation p.D163N 0.31 deleterious(0.02) possibly_damaging(0.466) TCGA-LT-A5Z6-01 14 101498332 101498332 G A MIR543 RNA 0.14 TCGA-LT-A5Z6-01 14 102471479 102471479 C A DYNC1H1 Missense_Mutation p.S1780Y 0.20 benign(0.01) TCGA-LT-A5Z6-01 14 102510707 102510707 G C DYNC1H1 Missense_Mutation p.D4261H 0.07 probably_damaging(1) TCGA-LT-A5Z6-01 14 102901282 102901282 G C TECPR2 Missense_Mutation p.E710Q 0.19 tolerated_low_confidence(0.39) benign(0.006) TCGA-LT-A5Z6-01 14 103969316 103969316 C A MARK3 Missense_Mutation p.P672T 0.12 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 14 105857978 105857978 C T PACS2 Silent p.D710D 0.11 TCGA-LT-A5Z6-01 14 21360169 21360169 C T RNASE3 Silent p.L108L 0.26 TCGA-LT-A5Z6-01 14 21465076 21465076 C G METTL17 3'UTR 0.28 TCGA-LT-A5Z6-01 14 21502226 21502226 C T RNASE13 Silent p.V74V 0.04 TCGA-LT-A5Z6-01 14 22337402 22337402 C T TRAV13-1 Missense_Mutation p.L65F 0.04 tolerated(0.49) benign(0.009) TCGA-LT-A5Z6-01 14 22788878 22788878 C T TRAV41 Nonsense_Mutation p.Q31* 0.36 TCGA-LT-A5Z6-01 14 22994242 22994242 G C TRAJ19 Missense_Mutation p.R4T 0.05 unknown(0) TCGA-LT-A5Z6-01 14 23282305 23282305 C A SLC7A7 Silent p.G101G 0.05 TCGA-LT-A5Z6-01 14 23306101 23306101 C G MMP14 Silent p.L25L 0.09 TCGA-LT-A5Z6-01 14 23344609 23344609 G A LRP10 Missense_Mutation p.R151H 0.07 deleterious(0.03) benign(0.212) TCGA-LT-A5Z6-01 14 23586840 23586840 C T CEBPE Silent p.Q234Q 0.07 TCGA-LT-A5Z6-01 14 24648629 24648629 G C REC8 Missense_Mutation p.E426Q 0.04 deleterious(0.03) benign(0.405) TCGA-LT-A5Z6-01 14 24658939 24658939 G A TM9SF1 Silent p.L501L 0.23 TCGA-LT-A5Z6-01 14 24659547 24659547 G A TM9SF1 Intron 0.21 TCGA-LT-A5Z6-01 14 24707568 24707568 G T GMPR2 Nonsense_Mutation p.E290* 0.05 TCGA-LT-A5Z6-01 14 24708961 24708961 G A TINF2 3'UTR 0.14 TCGA-LT-A5Z6-01 14 24709935 24709935 C T TINF2 Missense_Mutation p.E251K 0.14 deleterious_low_confidence(0.01) benign(0.005) TCGA-LT-A5Z6-01 14 24710511 24710511 C A TINF2 Nonsense_Mutation p.E136* 0.17 TCGA-LT-A5Z6-01 14 24772316 24772316 G A NOP9 Missense_Mutation p.E394K 0.04 deleterious(0) probably_damaging(0.95) TCGA-LT-A5Z6-01 14 24780291 24780291 C T LTB4R2 Silent p.L141L 0.25 TCGA-LT-A5Z6-01 14 24808688 24808688 C A RIPK3 Missense_Mutation p.D46Y 0.05 deleterious(0) probably_damaging(0.997) TCGA-LT-A5Z6-01 14 25281916 25281916 C T STXBP6 Silent p.%3D 0.06 TCGA-LT-A5Z6-01 14 26941533 26941533 G T NOVA1 Missense_Mutation p.A171D 0.05 tolerated(0.67) unknown(0) TCGA-LT-A5Z6-01 14 30066769 30066769 C T PRKD1 Missense_Mutation p.D788N 0.47 deleterious(0) possibly_damaging(0.903) TCGA-LT-A5Z6-01 14 31191121 31191121 G C SCFD1 Missense_Mutation p.E590Q 0.46 deleterious(0.01) possibly_damaging(0.604) TCGA-LT-A5Z6-01 14 33016024 33016024 C G AKAP6 Missense_Mutation p.S722C 0.24 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 14 37132476 37132476 C T PAX9 Silent p.L127L 0.34 TCGA-LT-A5Z6-01 14 39816940 39816940 G A CTAGE5 Missense_Mutation p.E665K 0.06 deleterious(0.04) benign(0.168) TCGA-LT-A5Z6-01 14 50101108 50101108 G A DNAAF2 Missense_Mutation p.R254C 0.12 deleterious(0) probably_damaging(0.938) TCGA-LT-A5Z6-01 14 64568722 64568722 G T SYNE2 Nonsense_Mutation p.E4152* 0.12 TCGA-LT-A5Z6-01 14 64574323 64574323 G A SYNE2 Missense_Mutation p.E4203K 0.06 benign(0.009) TCGA-LT-A5Z6-01 14 65268016 65268016 G A SPTB Silent p.L250L 0.47 TCGA-LT-A5Z6-01 14 66136172 66136172 C T FUT8 Missense_Mutation p.S270F 0.53 deleterious(0.02) benign(0.445) TCGA-LT-A5Z6-01 14 68117441 68117441 C A ARG2 Nonsense_Mutation p.S290* 0.38 TCGA-LT-A5Z6-01 14 68250070 68250070 C T ZFYVE26 Missense_Mutation p.D1267N 0.04 tolerated(0.11) benign(0.403) TCGA-LT-A5Z6-01 14 70839756 70839756 G A SYNJ2BP Silent p.L130L 0.06 TCGA-LT-A5Z6-01 14 71215569 71215569 C G MAP3K9 Missense_Mutation p.D435H 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-LT-A5Z6-01 14 74196608 74196608 G A ELMSAN1 Silent p.I610I 0.48 TCGA-LT-A5Z6-01 14 77844101 77844101 G A SAMD15 Missense_Mutation p.E114K 0.25 deleterious(0.02) possibly_damaging(0.904) TCGA-LT-A5Z6-01 14 81422042 81422042 G C TSHR Missense_Mutation p.L6F 0.12 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-LT-A5Z6-01 14 81609780 81609780 G A TSHR Missense_Mutation p.D460N 0.13 deleterious(0.02) probably_damaging(1) TCGA-LT-A5Z6-01 14 81743668 81743668 G T STON2 Missense_Mutation p.L663M 0.10 tolerated(0.11) benign(0.187) TCGA-LT-A5Z6-01 14 94046564 94046564 A T UNC79 Missense_Mutation p.I658L 0.07 tolerated(0.39) benign(0.425) TCGA-LT-A5Z6-01 14 95562508 95562508 G A DICER1 Silent p.L1583L 0.12 TCGA-LT-A5Z6-01 15 25474174 25474174 C T SNORD115-32 RNA 0.16 TCGA-LT-A5Z6-01 15 41100003 41100003 G A ZFYVE19 Silent p.L72L 0.75 TCGA-LT-A5Z6-01 15 42565480 42565480 C A TMEM87A Silent p.R39R 0.85 TCGA-LT-A5Z6-01 15 54306176 54306176 T A UNC13C Missense_Mutation p.F359Y 0.36 tolerated_low_confidence(0.23) benign(0.004) TCGA-LT-A5Z6-01 15 62209572 62209572 G A VPS13C Missense_Mutation p.L2675F 0.22 tolerated(0.08) benign(0.065) TCGA-LT-A5Z6-01 15 63481800 63481800 C T RAB8B 5'UTR 0.44 TCGA-LT-A5Z6-01 15 63922755 63922755 G A HERC1 Silent p.I4292I 0.25 TCGA-LT-A5Z6-01 15 67073392 67073392 G T SMAD6 Missense_Mutation p.W337L 0.44 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 15 68582602 68582602 T C FEM1B Silent p.Y302Y 0.08 TCGA-LT-A5Z6-01 15 69728523 69728523 G C KIF23 Missense_Mutation p.R440T 0.25 deleterious(0) possibly_damaging(0.883) TCGA-LT-A5Z6-01 15 74327530 74327530 G A PML Intron 0.03 TCGA-LT-A5Z6-01 15 76225158 76225158 C T FBXO22 Silent p.L309L 0.13 TCGA-LT-A5Z6-01 15 83826291 83826291 C A HDGFRP3 Missense_Mutation p.G112V 0.55 tolerated(0.12) probably_damaging(0.954) TCGA-LT-A5Z6-01 15 83933128 83933128 G A BNC1 Missense_Mutation p.S292F 0.47 tolerated(0.39) possibly_damaging(0.851) TCGA-LT-A5Z6-01 15 85191833 85191833 G A WDR73 Silent p.F74F 0.10 TCGA-LT-A5Z6-01 15 89790900 89790900 C G FANCI Missense_Mutation p.L8V 0.12 deleterious(0) possibly_damaging(0.891) TCGA-LT-A5Z6-01 15 90378663 90378663 C G C15orf38-AP3S2 3'UTR 0.13 TCGA-LT-A5Z6-01 15 90378674 90378674 C T C15orf38-AP3S2 3'UTR 0.10 TCGA-LT-A5Z6-01 15 91522417 91522417 C T PRC1 Missense_Mutation p.E360K 0.08 tolerated(0.06) benign(0.116) TCGA-LT-A5Z6-01 16 10031904 10031904 G C GRIN2A Missense_Mutation p.L307V 0.17 deleterious(0.03) possibly_damaging(0.866) TCGA-LT-A5Z6-01 16 1817199 1817199 G C MAPK8IP3 Silent p.P1045P 0.75 TCGA-LT-A5Z6-01 16 20871409 20871409 G A DCUN1D3 Silent p.I238I 0.69 TCGA-LT-A5Z6-01 16 20990745 20990745 G C DNAH3 Missense_Mutation p.F2661L 0.18 tolerated(0.05) probably_damaging(0.914) TCGA-LT-A5Z6-01 16 27789232 27789232 G A KIAA0556 Missense_Mutation p.M1581I 0.57 deleterious(0) possibly_damaging(0.687) TCGA-LT-A5Z6-01 16 30964571 30964571 C T ORAI3 Silent p.F98F 0.56 TCGA-LT-A5Z6-01 16 31332584 31332584 C T ITGAM Missense_Mutation p.S578F 0.53 deleterious(0.04) possibly_damaging(0.602) TCGA-LT-A5Z6-01 16 31498964 31498964 C G SLC5A2 Missense_Mutation p.R257G 0.11 tolerated(0.07) benign(0.055) TCGA-LT-A5Z6-01 16 4920906 4920906 G C UBN1 Missense_Mutation p.D498H 0.86 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 16 49670071 49670071 G A ZNF423 Nonsense_Mutation p.Q998* 0.24 TCGA-LT-A5Z6-01 16 61687545 61687545 G C CDH8 Silent p.L789L 0.74 TCGA-LT-A5Z6-01 16 75146305 75146305 G C LDHD Silent p.L491L 0.13 TCGA-LT-A5Z6-01 16 75563932 75563932 C T CHST5 Silent p.L117L 0.80 TCGA-LT-A5Z6-01 17 16735592 16735592 G C KRT16P2 RNA 0.07 TCGA-LT-A5Z6-01 17 17700911 17700911 C G RAI1 Missense_Mutation p.S1550C 0.08 tolerated(0.05) possibly_damaging(0.469) TCGA-LT-A5Z6-01 17 18005255 18005255 G A DRG2 Silent p.Q250Q 0.14 TCGA-LT-A5Z6-01 17 18785972 18785972 C T PRPSAP2 Silent p.F168F 0.31 TCGA-LT-A5Z6-01 17 28405290 28405290 C G EFCAB5 Nonsense_Mutation p.S932* 0.06 TCGA-LT-A5Z6-01 17 29848181 29848181 C T RAB11FIP4 Intron 0.10 TCGA-LT-A5Z6-01 17 33281526 33281526 C T CCT6B Missense_Mutation p.M143I 0.10 tolerated(0.61) benign(0.001) TCGA-LT-A5Z6-01 17 39534257 39534257 C A KRT34 3'UTR 0.43 TCGA-LT-A5Z6-01 17 40270417 40270417 G A KAT2A Silent p.L360L 0.12 TCGA-LT-A5Z6-01 17 40695846 40695846 G A NAGLU Missense_Mutation p.E608K 1.00 tolerated(0.88) benign(0.009) TCGA-LT-A5Z6-01 17 4175612 4175612 G A UBE2G1 3'UTR 0.30 TCGA-LT-A5Z6-01 17 41891692 41891692 C G MPP3 Missense_Mutation p.E349D 0.84 tolerated(1) benign(0.001) TCGA-LT-A5Z6-01 17 41901305 41901305 C T MPP3 Silent p.E226E 0.08 TCGA-LT-A5Z6-01 17 44949997 44949997 G A WNT9B Silent p.Q64Q 0.06 TCGA-LT-A5Z6-01 17 4675346 4675346 C T TM4SF5 Silent p.L43L 0.04 TCGA-LT-A5Z6-01 17 48628221 48628221 C T SPATA20 Silent p.G442G 0.08 TCGA-LT-A5Z6-01 17 48703684 48703684 G A CACNA1G Missense_Mutation p.E2236K 0.14 tolerated_low_confidence(0.26) benign(0.017) TCGA-LT-A5Z6-01 17 48761081 48761081 G C ABCC3 Silent p.L1306L 0.08 TCGA-LT-A5Z6-01 17 5039177 5039177 C T USP6 Silent p.F206F 0.07 TCGA-LT-A5Z6-01 17 51900706 51900706 G A KIF2B Silent p.S104S 0.34 TCGA-LT-A5Z6-01 17 57758671 57758671 C A CLTC Silent p.L1027L 0.05 TCGA-LT-A5Z6-01 17 58511592 58511592 C T C17orf64 3'Flank 0.26 TCGA-LT-A5Z6-01 17 60348753 60348753 C G TBC1D3P2 RNA 0.08 TCGA-LT-A5Z6-01 17 61615785 61615785 C T KCNH6 Silent p.F572F 0.15 TCGA-LT-A5Z6-01 17 67537903 67537903 G A MAP2K6 3'UTR 0.27 TCGA-LT-A5Z6-01 17 6909303 6909303 C G ALOX12 Missense_Mutation p.L459V 0.14 deleterious(0.04) benign(0.021) TCGA-LT-A5Z6-01 17 7017575 7017575 G A ASGR2 5'UTR 0.88 TCGA-LT-A5Z6-01 17 7230210 7230210 G A NEURL4 Silent p.S304S 0.11 TCGA-LT-A5Z6-01 17 73835941 73835941 G A UNC13D Missense_Mutation p.S345F 0.84 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 17 7478159 7478159 C T EIF4A1 Intron 0.07 TCGA-LT-A5Z6-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.79 TCGA-LT-A5Z6-01 17 7696487 7696487 G T DNAH2 Missense_Mutation p.W2511C 0.13 probably_damaging(0.949) TCGA-LT-A5Z6-01 17 78172547 78172547 C G CARD14 Intron 0.11 TCGA-LT-A5Z6-01 17 78319816 78319816 C T RNF213 Silent p.L2561L 0.05 TCGA-LT-A5Z6-01 17 78447207 78447207 G A NPTX1 Silent p.L230L 0.35 TCGA-LT-A5Z6-01 17 7849099 7849099 G C CNTROB Missense_Mutation p.E596D 0.10 tolerated(0.06) benign(0.007) TCGA-LT-A5Z6-01 17 7976113 7976113 C G ALOX12B Silent p.L694L 0.14 TCGA-LT-A5Z6-01 17 8215324 8215324 G C ARHGEF15 5'UTR 0.10 TCGA-LT-A5Z6-01 17 9820553 9820553 C G GAS7 Missense_Mutation p.E475Q 0.84 tolerated(0.19) benign(0.052) TCGA-LT-A5Z6-01 18 2772301 2772301 G A SMCHD1 Silent p.L1702L 0.09 TCGA-LT-A5Z6-01 18 28576858 28576858 G A DSC3 Missense_Mutation p.H798Y 0.35 deleterious(0.05) probably_damaging(0.98) TCGA-LT-A5Z6-01 18 28926018 28926018 G C DSG1 Missense_Mutation p.G653R 0.31 tolerated(0.06) benign(0.376) TCGA-LT-A5Z6-01 18 42530605 42530605 G C SETBP1 Missense_Mutation p.E434Q 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-LT-A5Z6-01 18 43685253 43685253 G A HAUS1 Missense_Mutation p.E42K 0.06 deleterious(0.05) benign(0.423) TCGA-LT-A5Z6-01 18 44554779 44554779 C G TCEB3C Missense_Mutation p.E479Q 0.12 tolerated(0.38) benign(0.154) TCGA-LT-A5Z6-01 18 47810776 47810776 C G CXXC1 Missense_Mutation p.D397H 0.06 deleterious(0) possibly_damaging(0.882) TCGA-LT-A5Z6-01 18 48593529 48593529 A G SMAD4 Missense_Mutation p.H427R 0.11 deleterious(0) possibly_damaging(0.89) TCGA-LT-A5Z6-01 18 58039474 58039474 C T MC4R Missense_Mutation p.D37N 0.06 tolerated(0.62) benign(0.01) TCGA-LT-A5Z6-01 18 66721302 66721302 G C CCDC102B Missense_Mutation p.Q490H 0.43 deleterious(0) probably_damaging(0.993) TCGA-LT-A5Z6-01 18 6890488 6890488 G A ARHGAP28 Silent p.K439K 0.50 TCGA-LT-A5Z6-01 18 6964675 6964675 C A LAMA1 Missense_Mutation p.R2441S 0.07 tolerated(0.59) benign(0.034) TCGA-LT-A5Z6-01 18 756778 756778 C G YES1 Missense_Mutation p.R17T 0.05 tolerated(0.59) benign(0.001) TCGA-LT-A5Z6-01 18 9258381 9258381 G T ANKRD12 Nonsense_Mutation p.E1706* 0.07 TCGA-LT-A5Z6-01 19 10753957 10753957 G C SLC44A2 Missense_Mutation p.E673Q 0.21 deleterious(0) probably_damaging(0.981) TCGA-LT-A5Z6-01 19 11687276 11687276 C G ACP5 Missense_Mutation p.E173Q 0.46 tolerated(0.5) benign(0.007) TCGA-LT-A5Z6-01 19 11891694 11891694 G A ZNF441 Missense_Mutation p.R352Q 0.42 tolerated(0.82) benign(0.408) TCGA-LT-A5Z6-01 19 12541769 12541769 G C ZNF443 Nonsense_Mutation p.S406* 0.28 TCGA-LT-A5Z6-01 19 13919935 13919935 C T ZSWIM4 Missense_Mutation p.L305F 0.07 deleterious(0.01) possibly_damaging(0.765) TCGA-LT-A5Z6-01 19 15547812 15547812 C T WIZ Missense_Mutation p.E112K 0.12 deleterious(0.03) possibly_damaging(0.477) TCGA-LT-A5Z6-01 19 17442156 17442156 C T ANO8 Silent p.L217L 0.09 TCGA-LT-A5Z6-01 19 17945390 17945390 G T JAK3 Silent p.L780L 0.11 TCGA-LT-A5Z6-01 19 17945399 17945399 G C JAK3 Silent p.L777L 0.10 TCGA-LT-A5Z6-01 19 19257570 19257570 C A MEF2B Missense_Mutation p.R219L 0.14 deleterious(0) benign(0.186) TCGA-LT-A5Z6-01 19 19740882 19740882 C G GMIP Missense_Mutation p.E935Q 0.32 tolerated(0.05) benign(0.373) TCGA-LT-A5Z6-01 19 22941650 22941650 G A ZNF99 Missense_Mutation p.S354L 0.51 deleterious(0.03) possibly_damaging(0.504) TCGA-LT-A5Z6-01 19 22952090 22952090 C A ZNF99 Missense_Mutation p.A14S 0.44 tolerated(1) benign(0.002) TCGA-LT-A5Z6-01 19 24310282 24310282 G C ZNF254 Missense_Mutation p.E494Q 0.27 deleterious(0.04) possibly_damaging(0.517) TCGA-LT-A5Z6-01 19 2433862 2433862 C G LMNB2 Missense_Mutation p.E482Q 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-LT-A5Z6-01 19 31039208 31039208 C T ZNF536 Silent p.S894S 0.08 TCGA-LT-A5Z6-01 19 34685421 34685421 C T LSM14A Missense_Mutation p.P54S 0.42 deleterious(0) possibly_damaging(0.836) TCGA-LT-A5Z6-01 19 3526167 3526167 C G FZR1 Nonsense_Mutation p.S82* 0.37 TCGA-LT-A5Z6-01 19 35823772 35823772 G C CD22 Silent p.L119L 0.40 TCGA-LT-A5Z6-01 19 36113576 36113576 G A HAUS5 Silent p.E575E 0.40 TCGA-LT-A5Z6-01 19 36113894 36113894 G A HAUS5 Silent p.%3D 0.38 TCGA-LT-A5Z6-01 19 36605784 36605784 C T POLR2I 5'UTR 0.10 TCGA-LT-A5Z6-01 19 37441510 37441510 G C ZNF568 Missense_Mutation p.Q485H 0.04 deleterious(0.04) probably_damaging(0.999) TCGA-LT-A5Z6-01 19 39228913 39228913 C A CAPN12 Missense_Mutation p.W322L 0.08 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 19 39303558 39303558 G C LGALS4 5'UTR 0.14 TCGA-LT-A5Z6-01 19 40009765 40009765 G A SELV Missense_Mutation p.D340N 0.44 tolerated(1) benign(0.007) TCGA-LT-A5Z6-01 19 40540954 40540954 C G ZNF780B Missense_Mutation p.Q604H 0.17 deleterious(0.03) benign(0.28) TCGA-LT-A5Z6-01 19 43428961 43428961 C T PSG7 Silent p.%3D 0.56 TCGA-LT-A5Z6-01 19 47424856 47424856 C G ARHGAP35 Nonsense_Mutation p.S975* 0.31 TCGA-LT-A5Z6-01 19 50979497 50979497 G A FAM71E1 Missense_Mutation p.P50L 0.11 tolerated_low_confidence(0.32) benign(0) TCGA-LT-A5Z6-01 19 52376194 52376194 C G ZNF577 Missense_Mutation p.G350A 0.15 deleterious(0.01) possibly_damaging(0.705) TCGA-LT-A5Z6-01 19 53015371 53015371 G C ZNF578 Missense_Mutation p.L579F 0.11 tolerated(0.19) benign(0.001) TCGA-LT-A5Z6-01 19 53619593 53619593 C T ZNF415 Missense_Mutation p.E37K 0.10 deleterious(0) possibly_damaging(0.801) TCGA-LT-A5Z6-01 19 53740297 53740297 A G ZNF677 Silent p.H561H 0.09 TCGA-LT-A5Z6-01 19 55148300 55148300 A T LILRB1 Missense_Mutation p.S644C 0.06 deleterious(0) probably_damaging(0.951) TCGA-LT-A5Z6-01 19 57089709 57089709 C G ZNF470 Missense_Mutation p.L638V 0.06 tolerated(0.95) benign(0.009) TCGA-LT-A5Z6-01 19 58117066 58117066 G C ZNF530 Missense_Mutation p.G58A 0.10 tolerated(0.11) possibly_damaging(0.804) TCGA-LT-A5Z6-01 19 58565197 58565197 C T ZSCAN1 Silent p.L335L 0.09 TCGA-LT-A5Z6-01 19 58850112 58850112 G A ZSCAN22 Missense_Mutation p.S299N 0.15 tolerated(0.35) benign(0.004) TCGA-LT-A5Z6-01 19 58966705 58966705 C T ZNF324B Nonsense_Mutation p.Q132* 0.10 TCGA-LT-A5Z6-01 19 59063034 59063034 C A CHMP2A Missense_Mutation p.K217N 0.26 tolerated(0.6) unknown(0) TCGA-LT-A5Z6-01 19 6534697 6534697 G A TNFSF9 Missense_Mutation p.D129N 0.33 tolerated(0.51) benign(0.019) TCGA-LT-A5Z6-01 19 7685263 7685263 C G XAB2 Missense_Mutation p.E722Q 0.09 deleterious(0) probably_damaging(0.994) TCGA-LT-A5Z6-01 19 7685744 7685744 C T XAB2 Silent p.Q653Q 0.11 TCGA-LT-A5Z6-01 19 7690904 7690904 G A XAB2 Silent p.I228I 0.11 TCGA-LT-A5Z6-01 19 9086274 9086274 G A MUC16 Silent p.L1847L 0.38 TCGA-LT-A5Z6-01 19 9452729 9452729 G A ZNF559 Missense_Mutation p.R201K 0.08 tolerated(0.21) possibly_damaging(0.636) TCGA-LT-A5Z6-01 1 10381764 10381764 C T KIF1B Intron 0.28 TCGA-LT-A5Z6-01 1 104120397 104120397 G A AMY2B Missense_Mutation p.D426N 0.41 deleterious(0.01) possibly_damaging(0.693) TCGA-LT-A5Z6-01 1 109271397 109271397 G C FNDC7 Missense_Mutation p.E505Q 0.10 tolerated(0.12) benign(0.006) TCGA-LT-A5Z6-01 1 109814236 109814236 C T CELSR2 Silent p.F2606F 0.07 TCGA-LT-A5Z6-01 1 11190666 11190666 C T MTOR Missense_Mutation p.E1845K 0.43 tolerated(0.25) probably_damaging(0.974) TCGA-LT-A5Z6-01 1 11595111 11595111 C G PTCHD2 Missense_Mutation p.I1193M 0.44 deleterious(0) probably_damaging(0.99) TCGA-LT-A5Z6-01 1 1244651 1244651 C T PUSL1 Silent p.I107I 0.21 TCGA-LT-A5Z6-01 1 1372338 1372338 G A VWA1 Silent p.L35L 0.07 TCGA-LT-A5Z6-01 1 1387480 1387480 C G ATAD3C Missense_Mutation p.Q44E 0.50 tolerated(0.3) benign(0.05) TCGA-LT-A5Z6-01 1 145507706 145507706 G T RBM8A Missense_Mutation p.D14Y 0.31 deleterious(0) probably_damaging(0.962) TCGA-LT-A5Z6-01 1 145507721 145507721 G A RBM8A Missense_Mutation p.E19K 0.35 deleterious(0.04) possibly_damaging(0.521) TCGA-LT-A5Z6-01 1 145508209 145508209 G C RBM8A Missense_Mutation p.E44Q 0.38 tolerated(0.48) benign(0.074) TCGA-LT-A5Z6-01 1 145508540 145508540 G A RBM8A Missense_Mutation p.D91N 0.35 tolerated(0.4) benign(0.229) TCGA-LT-A5Z6-01 1 151020573 151020573 G A C1orf56 Missense_Mutation p.E84K 0.10 deleterious(0.01) possibly_damaging(0.81) TCGA-LT-A5Z6-01 1 152957869 152957869 G C SPRR1A Missense_Mutation p.E55Q 0.04 tolerated(0.08) probably_damaging(0.982) TCGA-LT-A5Z6-01 1 154842130 154842130 G T KCNN3 Missense_Mutation p.S104Y 0.46 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-LT-A5Z6-01 1 155234262 155234262 G T CLK2 Missense_Mutation p.F380L 0.47 deleterious(0.01) possibly_damaging(0.536) TCGA-LT-A5Z6-01 1 15545835 15545835 G A TMEM51 Missense_Mutation p.E120K 0.30 deleterious(0.05) benign(0.075) TCGA-LT-A5Z6-01 1 155646428 155646428 C T YY1AP1 Missense_Mutation p.E217K 0.34 deleterious(0.01) probably_damaging(0.975) TCGA-LT-A5Z6-01 1 156108446 156108446 C T LMNA Silent p.V622V 0.24 TCGA-LT-A5Z6-01 1 156146223 156146223 C G SEMA4A Missense_Mutation p.S574C 0.10 deleterious(0) probably_damaging(0.94) TCGA-LT-A5Z6-01 1 156146651 156146651 C T SEMA4A Nonsense_Mutation p.Q717* 0.06 TCGA-LT-A5Z6-01 1 158326598 158326598 C G CD1E Nonsense_Mutation p.S360* 0.48 TCGA-LT-A5Z6-01 1 160160516 160160516 G A CASQ1 5'UTR 0.29 TCGA-LT-A5Z6-01 1 161131831 161131831 C T USP21 Missense_Mutation p.H202Y 0.08 deleterious(0.01) benign(0.059) TCGA-LT-A5Z6-01 1 167779023 167779023 G A ADCY10 Silent p.I1575I 0.08 TCGA-LT-A5Z6-01 1 169391101 169391101 A C CCDC181 Missense_Mutation p.C190G 0.05 tolerated(0.33) benign(0.281) TCGA-LT-A5Z6-01 1 169437885 169437885 G A SLC19A2 Missense_Mutation p.A407V 0.09 deleterious(0) probably_damaging(0.976) TCGA-LT-A5Z6-01 1 169438029 169438029 G A SLC19A2 Missense_Mutation p.S359L 0.10 deleterious(0.05) possibly_damaging(0.686) TCGA-LT-A5Z6-01 1 169588419 169588419 C G SELP Missense_Mutation p.Q14H 0.11 tolerated(0.14) benign(0.002) TCGA-LT-A5Z6-01 1 173819496 173819496 G T DARS2 Missense_Mutation p.R408I 0.12 tolerated(0.18) benign(0.009) TCGA-LT-A5Z6-01 1 173881113 173881113 G A SERPINC1 Nonsense_Mutation p.Q150* 0.35 TCGA-LT-A5Z6-01 1 178855171 178855171 C G RALGPS2 Missense_Mutation p.L370V 0.09 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 1 179057214 179057214 C T TOR3A Silent p.L270L 0.49 TCGA-LT-A5Z6-01 1 180031411 180031411 G T CEP350 Silent p.L1773L 0.58 TCGA-LT-A5Z6-01 1 180034352 180034352 G A CEP350 Missense_Mutation p.E1838K 0.33 probably_damaging(0.999) TCGA-LT-A5Z6-01 1 185892709 185892709 C G HMCN1 Silent p.L403L 0.42 TCGA-LT-A5Z6-01 1 186026401 186026401 G T HMCN1 Nonsense_Mutation p.E2394* 0.07 TCGA-LT-A5Z6-01 1 186044020 186044020 C T HMCN1 Nonsense_Mutation p.Q2763* 0.35 TCGA-LT-A5Z6-01 1 186050380 186050380 G T HMCN1 Nonsense_Mutation p.E2881* 0.16 TCGA-LT-A5Z6-01 1 203816718 203816718 G A ZC3H11A Silent p.L483L 0.27 TCGA-LT-A5Z6-01 1 20412631 20412631 G A PLA2G5 Silent p.V32V 0.07 TCGA-LT-A5Z6-01 1 206632088 206632088 C A SRGAP2 Missense_Mutation p.S790Y 0.21 tolerated(0.07) possibly_damaging(0.844) TCGA-LT-A5Z6-01 1 2121242 2121242 C G AL590822.2 5'UTR 0.30 TCGA-LT-A5Z6-01 1 212273823 212273823 C A DTL Missense_Mutation p.F497L 0.11 tolerated_low_confidence(0.36) benign(0.001) TCGA-LT-A5Z6-01 1 212798814 212798814 C T FAM71A Nonsense_Mutation p.Q199* 0.34 TCGA-LT-A5Z6-01 1 217955532 217955532 T C SPATA17 Missense_Mutation p.I247T 0.30 tolerated(0.33) benign(0.006) TCGA-LT-A5Z6-01 1 22032653 22032653 G T USP48 Missense_Mutation p.Q747K 0.34 tolerated(1) benign(0.004) TCGA-LT-A5Z6-01 1 22055207 22055207 G C USP48 Missense_Mutation p.L436V 0.06 tolerated(0.31) benign(0.145) TCGA-LT-A5Z6-01 1 226030077 226030077 G A EPHX1 Silent p.L314L 0.15 TCGA-LT-A5Z6-01 1 231488487 231488487 C G SPRTN Missense_Mutation p.L284V 0.34 tolerated(0.5) benign(0.004) TCGA-LT-A5Z6-01 1 231488506 231488506 C T SPRTN Missense_Mutation p.S290L 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-LT-A5Z6-01 1 23376983 23376983 G A KDM1A Silent p.Q227Q 0.41 TCGA-LT-A5Z6-01 1 23520356 23520356 G C HTR1D Missense_Mutation p.I119M 0.16 tolerated(0.2) possibly_damaging(0.835) TCGA-LT-A5Z6-01 1 235298969 235298969 C G RBM34 Missense_Mutation p.E336Q 0.11 deleterious(0.03) possibly_damaging(0.852) TCGA-LT-A5Z6-01 1 236716897 236716897 C T HEATR1 Missense_Mutation p.R2074K 0.07 deleterious(0.04) possibly_damaging(0.831) TCGA-LT-A5Z6-01 1 241929606 241929606 T C WDR64 Silent p.N668N 0.19 TCGA-LT-A5Z6-01 1 24411078 24411078 G A MYOM3 Missense_Mutation p.S617F 0.16 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 1 247319961 247319961 C G ZNF124 Missense_Mutation p.Q259H 0.38 deleterious(0.01) possibly_damaging(0.578) TCGA-LT-A5Z6-01 1 2523425 2523425 C G MMEL1 Missense_Mutation p.Q703H 0.11 tolerated(0.22) possibly_damaging(0.811) TCGA-LT-A5Z6-01 1 26752802 26752802 C G LIN28A Missense_Mutation p.C161W 0.08 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 1 29359653 29359653 C T EPB41 Silent p.L421L 0.07 TCGA-LT-A5Z6-01 1 3386060 3386060 G A ARHGEF16 Missense_Mutation p.E309K 0.05 tolerated(0.62) benign(0.232) TCGA-LT-A5Z6-01 1 3389987 3389987 G A ARHGEF16 Silent p.L402L 0.12 TCGA-LT-A5Z6-01 1 37337919 37337919 C T GRIK3 Missense_Mutation p.R201H 0.07 deleterious(0.01) possibly_damaging(0.682) TCGA-LT-A5Z6-01 1 38289446 38289446 G T MTF1 Silent p.I369I 0.51 TCGA-LT-A5Z6-01 1 39854050 39854050 C A MACF1 Missense_Mutation p.S3117Y 0.31 possibly_damaging(0.851) TCGA-LT-A5Z6-01 1 40129041 40129041 G C NT5C1A Missense_Mutation p.H167D 0.12 tolerated(0.19) benign(0.216) TCGA-LT-A5Z6-01 1 40697309 40697309 C T RLF Silent p.L356L 0.13 TCGA-LT-A5Z6-01 1 43890068 43890068 C G SZT2 Silent p.L812L 0.48 TCGA-LT-A5Z6-01 1 44443553 44443553 C T ATP6V0B Intron 0.35 TCGA-LT-A5Z6-01 1 45296678 45296678 C T PTCH2 Missense_Mutation p.E219K 0.15 tolerated(0.9) benign(0) TCGA-LT-A5Z6-01 1 45480391 45480391 G C UROD Intron 0.10 TCGA-LT-A5Z6-01 1 47351134 47351134 C A CYP4Z2P RNA 0.08 TCGA-LT-A5Z6-01 1 48696295 48696295 C G SLC5A9 Silent p.L201L 0.07 TCGA-LT-A5Z6-01 1 54507425 54507425 C G TMEM59 Missense_Mutation p.L199F 0.05 tolerated(0.12) benign(0.104) TCGA-LT-A5Z6-01 1 55604640 55604640 C T USP24 Missense_Mutation p.E932K 0.35 deleterious(0) possibly_damaging(0.872) TCGA-LT-A5Z6-01 1 57285007 57285007 C G C1orf168 5'UTR 0.35 TCGA-LT-A5Z6-01 1 65858480 65858480 C T DNAJC6 Missense_Mutation p.S612F 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-LT-A5Z6-01 1 66732396 66732396 G C PDE4B Intron 0.16 TCGA-LT-A5Z6-01 1 78162929 78162929 G T USP33 3'UTR 0.24 TCGA-LT-A5Z6-01 1 78163605 78163605 G A USP33 Missense_Mutation p.P872S 0.15 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 1 79002359 79002359 C A PTGFR Nonsense_Mutation p.S356* 0.12 TCGA-LT-A5Z6-01 1 8384681 8384681 G C SLC45A1 Missense_Mutation p.E98Q 0.36 deleterious(0) probably_damaging(0.989) TCGA-LT-A5Z6-01 1 87041239 87041239 G A CLCA4 Silent p.Q636Q 0.15 TCGA-LT-A5Z6-01 1 87380600 87380600 C G HS2ST1 5'UTR 0.21 TCGA-LT-A5Z6-01 1 9100032 9100032 G A SLC2A5 Missense_Mutation p.R238C 0.43 deleterious(0.03) probably_damaging(1) TCGA-LT-A5Z6-01 1 94342974 94342974 C G DNTTIP2 Missense_Mutation p.D173H 0.11 tolerated(0.06) benign(0.048) TCGA-LT-A5Z6-01 1 94884008 94884008 C T ABCD3 5'Flank 0.35 TCGA-LT-A5Z6-01 20 14307249 14307249 G C FLRT3 Missense_Mutation p.L302V 0.06 tolerated(0.76) possibly_damaging(0.773) TCGA-LT-A5Z6-01 20 20475898 20475898 C T RALGAPA2 Missense_Mutation p.E1744K 0.12 deleterious(0) probably_damaging(0.988) TCGA-LT-A5Z6-01 20 21312246 21312246 C G XRN2 Missense_Mutation p.I208M 0.43 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 20 25284237 25284237 G C ABHD12 Silent p.L326L 0.15 TCGA-LT-A5Z6-01 20 25457117 25457117 C A NINL Missense_Mutation p.G937V 0.16 tolerated(0.18) benign(0.045) TCGA-LT-A5Z6-01 20 2644149 2644149 C T IDH3B Missense_Mutation p.E94K 0.71 tolerated(0.1) benign(0.046) TCGA-LT-A5Z6-01 20 31043946 31043946 T C C20orf112 Missense_Mutation p.K121R 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-LT-A5Z6-01 20 32000113 32000113 G C SNTA1 Silent p.L343L 0.23 TCGA-LT-A5Z6-01 20 32848184 32848184 G C ASIP Missense_Mutation p.D2H 0.37 deleterious(0) probably_damaging(0.953) TCGA-LT-A5Z6-01 20 34218894 34218894 C T CPNE1 Silent p.L313L 0.16 TCGA-LT-A5Z6-01 20 34218928 34218928 C G CPNE1 Missense_Mutation p.G302A 0.12 deleterious(0) possibly_damaging(0.849) TCGA-LT-A5Z6-01 20 35396441 35396441 G C DSN1 Silent p.L120L 0.08 TCGA-LT-A5Z6-01 20 3726567 3726567 G A HSPA12B Silent p.L188L 0.48 TCGA-LT-A5Z6-01 20 43348708 43348708 C G WISP2 Silent p.V77V 0.33 TCGA-LT-A5Z6-01 20 43379086 43379086 C T KCNK15 Silent p.I200I 0.09 TCGA-LT-A5Z6-01 20 43881020 43881020 G A SLPI 3'UTR 0.18 TCGA-LT-A5Z6-01 20 44184445 44184445 C G WFDC8 Missense_Mutation p.D114H 0.27 deleterious(0.04) possibly_damaging(0.582) TCGA-LT-A5Z6-01 20 44472254 44472254 G A ACOT8 Silent p.F251F 0.61 TCGA-LT-A5Z6-01 20 44640312 44640312 C T MMP9 Missense_Mutation p.S308F 0.07 deleterious(0) benign(0.118) TCGA-LT-A5Z6-01 20 56190025 56190025 C T ZBP1 Silent p.V140V 0.06 TCGA-LT-A5Z6-01 20 58587833 58587833 C A CDH26 3'UTR 0.70 TCGA-LT-A5Z6-01 20 60776047 60776047 G C MTG2 Missense_Mutation p.E379Q 0.11 tolerated(0.1) probably_damaging(0.987) TCGA-LT-A5Z6-01 20 60987919 60987919 G A RBBP8NL Silent p.D571D 0.04 TCGA-LT-A5Z6-01 20 62664345 62664345 G A PRPF6 Silent p.%3D 0.48 TCGA-LT-A5Z6-01 20 62729981 62729981 C G OPRL1 Silent p.L314L 0.17 TCGA-LT-A5Z6-01 20 9561536 9561536 G A PAK7 Silent p.I82I 0.32 TCGA-LT-A5Z6-01 21 30257656 30257656 C T N6AMT1 Silent p.E4E 0.33 TCGA-LT-A5Z6-01 21 33057736 33057736 G C SCAF4 Missense_Mutation p.H757Q 0.14 unknown(0) TCGA-LT-A5Z6-01 21 34787221 34787221 C T IFNGR2 Nonsense_Mutation p.Q34* 0.20 TCGA-LT-A5Z6-01 21 35286800 35286800 C T ATP5O Missense_Mutation p.R14Q 0.13 tolerated(0.1) benign(0.02) TCGA-LT-A5Z6-01 21 41300992 41300992 C G PCP4 Missense_Mutation p.Q49E 0.24 deleterious(0) possibly_damaging(0.728) TCGA-LT-A5Z6-01 21 44485334 44485334 C T CBS Missense_Mutation p.E239K 0.12 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 22 18640584 18640584 C T USP18 Missense_Mutation p.H52Y 0.28 deleterious(0) possibly_damaging(0.876) TCGA-LT-A5Z6-01 22 19338903 19338903 C A HIRA Missense_Mutation p.S972I 0.05 deleterious(0) possibly_damaging(0.575) TCGA-LT-A5Z6-01 22 22673296 22673296 C T IGLV5-52 Missense_Mutation p.S30F 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-LT-A5Z6-01 22 23637301 23637301 G A BCR Missense_Mutation p.G991S 0.06 tolerated(0.1) probably_damaging(0.961) TCGA-LT-A5Z6-01 22 23974048 23974048 C T C22orf43 Missense_Mutation p.E55K 0.35 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-LT-A5Z6-01 22 25016894 25016894 G A GGT1 Missense_Mutation p.R197Q 0.05 tolerated(0.22) benign(0.026) TCGA-LT-A5Z6-01 22 25152613 25152613 G T PIWIL3 Missense_Mutation p.Q139K 0.18 deleterious(0.01) benign(0.065) TCGA-LT-A5Z6-01 22 30384487 30384487 G A MTMR3 Missense_Mutation p.E77K 0.27 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 22 30494894 30494894 G A HORMAD2 Silent p.V35V 0.24 TCGA-LT-A5Z6-01 22 32289627 32289627 G C DEPDC5 Missense_Mutation p.D1356H 0.04 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 22 32635034 32635034 C T SLC5A4 Missense_Mutation p.G174E 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-LT-A5Z6-01 22 36680279 36680279 G C MYH9 Silent p.L1875L 0.07 TCGA-LT-A5Z6-01 22 37696979 37696979 G A CYTH4 Missense_Mutation p.E156K 0.19 deleterious(0) possibly_damaging(0.86) TCGA-LT-A5Z6-01 22 41257061 41257061 G C DNAJB7 3'UTR 0.55 TCGA-LT-A5Z6-01 22 50728615 50728615 G C PLXNB2 Missense_Mutation p.F133L 0.12 tolerated(0.19) benign(0.338) TCGA-LT-A5Z6-01 22 50754600 50754600 C T DENND6B Intron 0.61 TCGA-LT-A5Z6-01 2 113346419 113346419 G A CHCHD5 Intron 0.78 TCGA-LT-A5Z6-01 2 113940560 113940560 A G PSD4 Missense_Mutation p.K176R 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 2 131704217 131704217 C T ARHGEF4 Intron 0.22 TCGA-LT-A5Z6-01 2 133541943 133541943 G C NCKAP5 Nonsense_Mutation p.S814* 0.72 TCGA-LT-A5Z6-01 2 136547288 136547288 C T LCT Missense_Mutation p.E1806K 0.59 deleterious(0.01) benign(0.314) TCGA-LT-A5Z6-01 2 141359062 141359062 C G LRP1B Missense_Mutation p.E2316Q 0.24 benign(0.403) TCGA-LT-A5Z6-01 2 14774709 14774709 C G FAM84A Silent p.L202L 0.30 TCGA-LT-A5Z6-01 2 1653401 1653401 G C PXDN Missense_Mutation p.I717M 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-LT-A5Z6-01 2 165578958 165578958 G A COBLL1 Missense_Mutation p.R246C 0.17 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 2 168921845 168921845 G A STK39 Missense_Mutation p.S430F 0.70 deleterious(0.04) benign(0.005) TCGA-LT-A5Z6-01 2 179440539 179440539 G A TTN Silent p.L23440L 0.09 TCGA-LT-A5Z6-01 2 179455520 179455520 C G TTN Missense_Mutation p.R20311P 0.22 TCGA-LT-A5Z6-01 2 179641403 179641403 C A TTN Missense_Mutation p.G1730C 0.09 TCGA-LT-A5Z6-01 2 185798354 185798354 G T ZNF804A Nonsense_Mutation p.E94* 0.13 TCGA-LT-A5Z6-01 2 191840560 191840560 C A STAT1 Nonsense_Mutation p.E705* 0.20 TCGA-LT-A5Z6-01 2 191895722 191895722 C T STAT4 Silent p.L732L 0.12 TCGA-LT-A5Z6-01 2 198953595 198953595 C G PLCL1 Missense_Mutation p.S910C 0.08 tolerated(0.07) benign(0.014) TCGA-LT-A5Z6-01 2 201768387 201768387 C G NIF3L1 Missense_Mutation p.L374V 0.14 deleterious(0.01) benign(0.242) TCGA-LT-A5Z6-01 2 206590657 206590657 C T NRP2 Silent p.L281L 0.17 TCGA-LT-A5Z6-01 2 216230246 216230246 C T FN1 Missense_Mutation p.E2376K 0.17 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 2 220145384 220145384 C T DNAJB2 Silent p.A50A 0.50 TCGA-LT-A5Z6-01 2 224866575 224866575 G A SERPINE2 Silent p.L27L 0.09 TCGA-LT-A5Z6-01 2 228476097 228476097 C T C2orf83 3'UTR 0.77 TCGA-LT-A5Z6-01 2 228882090 228882090 C G SPHKAP Silent p.L1160L 0.09 TCGA-LT-A5Z6-01 2 231033799 231033799 G A SP110 3'UTR 0.75 TCGA-LT-A5Z6-01 2 233432013 233432013 G C EIF4E2 Intron 0.86 TCGA-LT-A5Z6-01 2 238428648 238428648 C A MLPH Silent p.V217V 0.24 TCGA-LT-A5Z6-01 2 27310210 27310210 C G KHK Missense_Mutation p.S28W 0.50 deleterious(0) possibly_damaging(0.895) TCGA-LT-A5Z6-01 2 27590617 27590617 T C EIF2B4 Missense_Mutation p.M280V 0.11 tolerated(0.68) benign(0) TCGA-LT-A5Z6-01 2 27805953 27805953 G A ZNF512 5'UTR 0.08 TCGA-LT-A5Z6-01 2 28616548 28616548 G A FOSL2 5'UTR 0.30 TCGA-LT-A5Z6-01 2 39417575 39417575 C G CDKL4 Missense_Mutation p.D175H 0.03 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 2 48915340 48915340 C T LHCGR Silent p.L532L 0.06 TCGA-LT-A5Z6-01 2 56602978 56602978 G C CCDC85A Missense_Mutation p.D494H 0.09 tolerated_low_confidence(0.14) possibly_damaging(0.548) TCGA-LT-A5Z6-01 2 62065721 62065721 G C FAM161A Nonsense_Mutation p.S568* 0.08 TCGA-LT-A5Z6-01 2 64148364 64148364 G C VPS54 Silent p.V615V 0.09 TCGA-LT-A5Z6-01 2 73478516 73478516 G C CCT7 Missense_Mutation p.D456H 0.07 deleterious(0) probably_damaging(0.992) TCGA-LT-A5Z6-01 2 85866454 85866454 C T USP39 Silent p.L408L 0.33 TCGA-LT-A5Z6-01 2 89567968 89567968 C G IGKV1-33 Silent p.A47A 0.07 TCGA-LT-A5Z6-01 3 10049005 10049005 C T AC022007.5 RNA 0.17 TCGA-LT-A5Z6-01 3 105377718 105377718 G C CBLB 3'UTR 0.23 TCGA-LT-A5Z6-01 3 108203978 108203978 C G MYH15 Missense_Mutation p.Q378H 0.07 deleterious(0) probably_damaging(0.935) TCGA-LT-A5Z6-01 3 113956017 113956017 C A ZNF80 5'UTR 0.25 TCGA-LT-A5Z6-01 3 122354001 122354001 C G PARP15 Silent p.V569V 0.37 TCGA-LT-A5Z6-01 3 12475473 12475473 G A PPARG Silent p.L449L 0.60 TCGA-LT-A5Z6-01 3 12475649 12475649 G C PPARG 3'UTR 0.53 TCGA-LT-A5Z6-01 3 12475719 12475719 G C PPARG 3'UTR 0.65 TCGA-LT-A5Z6-01 3 129023437 129023437 C G HMCES Silent p.L278L 0.10 TCGA-LT-A5Z6-01 3 130287440 130287440 C T COL6A6 Missense_Mutation p.P798L 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-LT-A5Z6-01 3 130653526 130653526 C T ATP2C1 Nonsense_Mutation p.Q133* 0.25 TCGA-LT-A5Z6-01 3 134670665 134670665 C T EPHB1 Silent p.F192F 0.06 TCGA-LT-A5Z6-01 3 148458783 148458783 T C AGTR1 5'UTR 0.25 TCGA-LT-A5Z6-01 3 148614596 148614596 G A CPA3 3'UTR 0.20 TCGA-LT-A5Z6-01 3 170079164 170079164 G C SKIL Missense_Mutation p.E349Q 0.06 tolerated(0.09) probably_damaging(0.981) TCGA-LT-A5Z6-01 3 17052159 17052159 C T PLCL2 Missense_Mutation p.H315Y 0.23 tolerated(0.14) possibly_damaging(0.861) TCGA-LT-A5Z6-01 3 179460039 179460039 G A USP13 Missense_Mutation p.E479K 0.47 deleterious(0) possibly_damaging(0.497) TCGA-LT-A5Z6-01 3 185241892 185241892 C G LIPH Missense_Mutation p.D229H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-LT-A5Z6-01 3 186272308 186272308 C G TBCCD1 Missense_Mutation p.E427Q 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-LT-A5Z6-01 3 186503753 186503753 G A EIF4A2 Missense_Mutation p.E144K 0.11 deleterious(0) possibly_damaging(0.797) TCGA-LT-A5Z6-01 3 195000075 195000075 T C ACAP2 Silent p.Q773Q 0.07 TCGA-LT-A5Z6-01 3 196311153 196311153 G A FBXO45 Silent p.V275V 0.53 TCGA-LT-A5Z6-01 3 196434499 196434499 C T CEP19 Missense_Mutation p.D143N 0.24 tolerated(0.22) benign(0.057) TCGA-LT-A5Z6-01 3 25833244 25833244 C G OXSM Missense_Mutation p.L245V 0.38 tolerated(0.19) benign(0.007) TCGA-LT-A5Z6-01 3 33425616 33425616 G C FBXL2 Missense_Mutation p.E363Q 0.07 tolerated(0.57) benign(0.15) TCGA-LT-A5Z6-01 3 45077303 45077303 G A CLEC3B Missense_Mutation p.D166N 0.07 tolerated(0.27) probably_damaging(1) TCGA-LT-A5Z6-01 3 46007805 46007805 C G FYCO1 Silent p.L1007L 0.32 TCGA-LT-A5Z6-01 3 46306898 46306898 C T CCR3 Silent p.F104F 0.12 TCGA-LT-A5Z6-01 3 48664355 48664355 C T SLC26A6 Missense_Mutation p.G676D 0.26 deleterious(0) benign(0.297) TCGA-LT-A5Z6-01 3 48665939 48665939 C T SLC26A6 Silent p.K576K 0.46 TCGA-LT-A5Z6-01 3 48671086 48671086 G C SLC26A6 Intron 0.50 TCGA-LT-A5Z6-01 3 48699002 48699002 C T CELSR3 Missense_Mutation p.E356K 0.08 deleterious(0) possibly_damaging(0.662) TCGA-LT-A5Z6-01 3 49039949 49039949 G T P4HTM Missense_Mutation p.R215L 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-LT-A5Z6-01 3 50005348 50005348 G A RBM6 Missense_Mutation p.D164N 0.32 tolerated(0.12) benign(0.081) TCGA-LT-A5Z6-01 3 52257729 52257729 G A TLR9 Silent p.L355L 0.07 TCGA-LT-A5Z6-01 3 52554414 52554414 A T STAB1 Splice_Site p.X1834_splice 0.10 TCGA-LT-A5Z6-01 3 53854560 53854560 G T CHDH Nonsense_Mutation p.S354* 0.43 TCGA-LT-A5Z6-01 3 53907122 53907122 C G ACTR8 Missense_Mutation p.Q366H 0.27 tolerated(0.13) benign(0.2) TCGA-LT-A5Z6-01 3 56468478 56468478 C G ERC2 Missense_Mutation p.W186C 0.10 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 3 57203257 57203257 C T IL17RD 5'Flank 0.48 TCGA-LT-A5Z6-01 3 73111900 73111900 C G EBLN2 Nonsense_Mutation p.S223* 0.40 TCGA-LT-A5Z6-01 3 74418498 74418498 C T CNTN3 Missense_Mutation p.R263K 0.11 tolerated(0.3) probably_damaging(0.997) TCGA-LT-A5Z6-01 3 74535739 74535739 G A CNTN3 Missense_Mutation p.R76C 0.12 deleterious(0) possibly_damaging(0.621) TCGA-LT-A5Z6-01 3 77607199 77607199 C A ROBO2 Missense_Mutation p.L462I 0.09 tolerated(0.47) possibly_damaging(0.694) TCGA-LT-A5Z6-01 3 93624648 93624648 G A PROS1 Missense_Mutation p.S194L 0.25 tolerated(0.23) benign(0.005) TCGA-LT-A5Z6-01 3 98110249 98110249 C G OR5K3 Nonsense_Mutation p.S247* 0.08 TCGA-LT-A5Z6-01 4 100237181 100237181 G A ADH1B Silent p.F147F 0.09 TCGA-LT-A5Z6-01 4 10446572 10446572 C T ZNF518B Missense_Mutation p.E461K 0.09 tolerated(0.29) benign(0.011) TCGA-LT-A5Z6-01 4 114274779 114274779 C A ANK2 Missense_Mutation p.L1669M 0.10 benign(0.309) TCGA-LT-A5Z6-01 4 119626826 119626826 C T METTL14 Missense_Mutation p.H306Y 0.78 deleterious(0) probably_damaging(0.988) TCGA-LT-A5Z6-01 4 119951190 119951190 G T SYNPO2 Missense_Mutation p.E420D 0.16 tolerated(0.17) benign(0.024) TCGA-LT-A5Z6-01 4 1232114 1232114 G C CTBP1 Missense_Mutation p.P18A 0.04 deleterious_low_confidence(0.05) benign(0.103) TCGA-LT-A5Z6-01 4 141888925 141888925 C T RNF150 Missense_Mutation p.G196E 0.73 deleterious(0) probably_damaging(0.996) TCGA-LT-A5Z6-01 4 153258983 153258983 G A FBXW7 Nonsense_Mutation p.R278* 0.83 TCGA-LT-A5Z6-01 4 157688969 157688969 C T PDGFC Missense_Mutation p.E293K 0.83 tolerated(0.21) possibly_damaging(0.497) TCGA-LT-A5Z6-01 4 15779975 15779975 C G CD38 5'UTR 0.38 TCGA-LT-A5Z6-01 4 184182435 184182435 C T WWC2 Silent p.S553S 0.60 TCGA-LT-A5Z6-01 4 206491 206491 C T ZNF876P RNA 0.46 TCGA-LT-A5Z6-01 4 2343250 2343250 C G ZFYVE28 Missense_Mutation p.E91D 0.16 tolerated(0.22) probably_damaging(0.995) TCGA-LT-A5Z6-01 4 23814451 23814451 C G PPARGC1A Missense_Mutation p.K646N 0.09 deleterious(0.04) unknown(0) TCGA-LT-A5Z6-01 4 39293454 39293454 C A RFC1 Missense_Mutation p.R992S 0.31 tolerated(0.24) benign(0.026) TCGA-LT-A5Z6-01 4 41941391 41941391 C T TMEM33 Missense_Mutation p.P107S 0.07 deleterious(0.01) possibly_damaging(0.867) TCGA-LT-A5Z6-01 4 4303819 4303819 C T ZBTB49 Missense_Mutation p.H86Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-LT-A5Z6-01 4 48169815 48169815 C T TEC Nonsense_Mutation p.W217* 0.42 TCGA-LT-A5Z6-01 4 56319238 56319238 C G CLOCK Missense_Mutation p.E397Q 0.22 deleterious(0.02) benign(0.142) TCGA-LT-A5Z6-01 4 57318188 57318188 G A PAICS Missense_Mutation p.E315K 0.21 possibly_damaging(0.542) TCGA-LT-A5Z6-01 4 66189800 66189800 C G EPHA5 3'UTR 0.83 TCGA-LT-A5Z6-01 4 76879068 76879068 C T SDAD1 Missense_Mutation p.E504K 0.24 tolerated(0.24) benign(0.328) TCGA-LT-A5Z6-01 4 77816858 77816858 G A SOWAHB Silent p.T715T 0.06 TCGA-LT-A5Z6-01 4 79832852 79832852 G T BMP2K Missense_Mutation p.D1051Y 0.10 deleterious_low_confidence(0) unknown(0) TCGA-LT-A5Z6-01 4 83801984 83801984 C T SEC31A Missense_Mutation p.M57I 0.04 deleterious(0.05) possibly_damaging(0.459) TCGA-LT-A5Z6-01 4 85662940 85662940 C G WDFY3 Missense_Mutation p.D2070H 0.10 deleterious(0) benign(0.016) TCGA-LT-A5Z6-01 4 87022230 87022230 G A MAPK10 Silent p.I235I 0.81 TCGA-LT-A5Z6-01 4 88036279 88036279 C A AFF1 Missense_Mutation p.P765Q 0.09 tolerated(0.06) unknown(0) TCGA-LT-A5Z6-01 4 88379119 88379119 G C NUDT9 Missense_Mutation p.E333D 0.09 deleterious(0.04) benign(0.164) TCGA-LT-A5Z6-01 4 985114 985114 G T SLC26A1 Missense_Mutation p.F126L 0.05 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 5 101631681 101631681 G C SLCO4C1 Missense_Mutation p.Q96E 0.08 tolerated(0.94) benign(0.001) TCGA-LT-A5Z6-01 5 114917013 114917013 C T TMED7-TICAM2 Intron 0.57 TCGA-LT-A5Z6-01 5 138614588 138614588 G C SNORA74A RNA 0.05 TCGA-LT-A5Z6-01 5 139232080 139232080 G C NRG2 Missense_Mutation p.S494C 0.47 deleterious(0) probably_damaging(0.99) TCGA-LT-A5Z6-01 5 140176817 140176817 G T PCDHA2 Missense_Mutation p.Q756H 0.10 tolerated_low_confidence(0.07) benign(0.061) TCGA-LT-A5Z6-01 5 141524152 141524152 C G NDFIP1 Silent p.L193L 0.37 TCGA-LT-A5Z6-01 5 148384236 148384236 C T SH3TC2 3'UTR 0.29 TCGA-LT-A5Z6-01 5 150930306 150930306 G C FAT2 Missense_Mutation p.Q1475E 0.08 benign(0.005) TCGA-LT-A5Z6-01 5 153433335 153433335 C G MFAP3 3'UTR 0.39 TCGA-LT-A5Z6-01 5 157166467 157166467 G C THG1L Missense_Mutation p.E292Q 0.41 tolerated(0.3) benign(0.065) TCGA-LT-A5Z6-01 5 158745759 158745759 C T IL12B Silent p.K280K 0.46 TCGA-LT-A5Z6-01 5 1593385 1593385 C G CTD-2012J19.3 5'Flank 0.31 TCGA-LT-A5Z6-01 5 175782582 175782582 G A KIAA1191 Missense_Mutation p.L67F 0.13 deleterious(0.03) probably_damaging(0.988) TCGA-LT-A5Z6-01 5 176638319 176638319 G C NSD1 Missense_Mutation p.Q973H 0.12 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-LT-A5Z6-01 5 176638752 176638752 G A NSD1 Missense_Mutation p.D1118N 0.09 deleterious_low_confidence(0.03) benign(0.001) TCGA-LT-A5Z6-01 5 176795193 176795193 G A RGS14 Missense_Mutation p.E259K 0.09 deleterious(0.02) possibly_damaging(0.589) TCGA-LT-A5Z6-01 5 176857941 176857941 C T GRK6 Nonsense_Mutation p.Q41* 0.07 TCGA-LT-A5Z6-01 5 178040800 178040800 C T CLK4 Missense_Mutation p.R196H 0.34 deleterious(0) probably_damaging(0.974) TCGA-LT-A5Z6-01 5 179263460 179263460 C T SQSTM1 Missense_Mutation p.S397F 0.10 deleterious(0) probably_damaging(0.984) TCGA-LT-A5Z6-01 5 1878691 1878691 C T IRX4 Missense_Mutation p.E318K 0.50 tolerated(0.27) benign(0.116) TCGA-LT-A5Z6-01 5 23526672 23526672 G A PRDM9 Missense_Mutation p.R492K 0.44 tolerated(0.31) benign(0.425) TCGA-LT-A5Z6-01 5 26881253 26881253 G C CDH9 Missense_Mutation p.R788G 0.41 tolerated(0.05) benign(0.002) TCGA-LT-A5Z6-01 5 35991299 35991299 G C UGT3A1 Missense_Mutation p.S15C 0.29 tolerated(0.05) possibly_damaging(0.497) TCGA-LT-A5Z6-01 5 54416329 54416329 C A CDC20B Missense_Mutation p.G422V 0.08 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 5 54528309 54528309 G C CCNO Silent p.L149L 0.11 TCGA-LT-A5Z6-01 5 5461528 5461528 T C KIAA0947 Missense_Mutation p.I694T 0.08 tolerated(0.58) benign(0.009) TCGA-LT-A5Z6-01 5 56210759 56210759 C A SETD9 Missense_Mutation p.L260I 0.35 tolerated(0.33) possibly_damaging(0.905) TCGA-LT-A5Z6-01 5 57755848 57755848 C T PLK2 5'UTR 0.08 TCGA-LT-A5Z6-01 5 71616252 71616252 C T PTCD2 Nonsense_Mutation p.R15* 0.31 TCGA-LT-A5Z6-01 5 76028929 76028929 C A F2R Silent p.I293I 0.39 TCGA-LT-A5Z6-01 5 7802383 7802383 C T ADCY2 Missense_Mutation p.P894L 0.13 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 5 7866072 7866072 A C FASTKD3 Missense_Mutation p.L488W 0.37 deleterious(0.04) probably_damaging(0.926) TCGA-LT-A5Z6-01 5 79950579 79950579 C G MSH3 Silent p.L11L 0.11 TCGA-LT-A5Z6-01 5 82491742 82491742 G A XRCC4 Missense_Mutation p.D157N 0.11 deleterious(0.03) probably_damaging(0.979) TCGA-LT-A5Z6-01 6 109820412 109820412 G C AK9 Missense_Mutation p.I1627M 0.39 deleterious(0) probably_damaging(0.997) TCGA-LT-A5Z6-01 6 114378490 114378490 C T HS3ST5 Silent p.L324L 0.58 TCGA-LT-A5Z6-01 6 116914254 116914254 C T RWDD1 Missense_Mutation p.S241L 0.58 tolerated_low_confidence(0.09) unknown(0) TCGA-LT-A5Z6-01 6 117641162 117641162 G T ROS1 Missense_Mutation p.L1937I 0.68 deleterious(0) probably_damaging(0.936) TCGA-LT-A5Z6-01 6 13160497 13160497 G A PHACTR1 Silent p.L159L 0.05 TCGA-LT-A5Z6-01 6 131944576 131944576 G C MED23 Missense_Mutation p.S104C 0.14 tolerated(0.4) benign(0.007) TCGA-LT-A5Z6-01 6 132031806 132031806 C G CTAGE9 Missense_Mutation p.E118Q 0.14 tolerated(0.22) possibly_damaging(0.835) TCGA-LT-A5Z6-01 6 132211500 132211500 C T ENPP1 Missense_Mutation p.S876L 0.71 tolerated(0.35) benign(0.004) TCGA-LT-A5Z6-01 6 139235838 139235838 G A REPS1 Missense_Mutation p.S593L 0.74 deleterious(0.02) benign(0.128) TCGA-LT-A5Z6-01 6 144835911 144835911 G A UTRN Silent p.L1733L 0.19 TCGA-LT-A5Z6-01 6 152527479 152527479 G T SYNE1 Missense_Mutation p.L7615M 0.85 possibly_damaging(0.781) TCGA-LT-A5Z6-01 6 155152176 155152176 G C SCAF8 Missense_Mutation p.G754A 0.09 tolerated_low_confidence(0.79) possibly_damaging(0.886) TCGA-LT-A5Z6-01 6 158495659 158495659 C T SYNJ2 Silent p.F727F 0.71 TCGA-LT-A5Z6-01 6 158495692 158495692 C G SYNJ2 Silent p.V738V 0.81 TCGA-LT-A5Z6-01 6 165746606 165746606 T A PDE10A Missense_Mutation p.S760C 0.75 deleterious(0.03) benign(0.341) TCGA-LT-A5Z6-01 6 25450578 25450578 C G LRRC16A Missense_Mutation p.Q161E 0.18 tolerated(1) benign(0.01) TCGA-LT-A5Z6-01 6 25850350 25850350 C G SLC17A3 Missense_Mutation p.G350A 0.08 tolerated(0.19) benign(0.173) TCGA-LT-A5Z6-01 6 29641014 29641014 C A ZFP57 Nonsense_Mutation p.E292* 0.49 TCGA-LT-A5Z6-01 6 30618794 30618794 C A C6orf136 Silent p.S347S 0.07 TCGA-LT-A5Z6-01 6 31607379 31607379 C G BAG6 Silent p.V1067V 0.04 TCGA-LT-A5Z6-01 6 31777763 31777763 G A HSPA1L 3'UTR 0.61 TCGA-LT-A5Z6-01 6 31778491 31778491 G C HSPA1L Missense_Mutation p.S420C 0.49 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-LT-A5Z6-01 6 31778552 31778552 G A HSPA1L Missense_Mutation p.P400S 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 6 32065177 32065177 C G TNXB Silent p.L151L 0.08 TCGA-LT-A5Z6-01 6 32826143 32826143 A G PSMB9 Silent p.V131V 0.53 TCGA-LT-A5Z6-01 6 32944110 32944110 G C BRD2 Missense_Mutation p.E232Q 0.41 tolerated(0.61) benign(0.444) TCGA-LT-A5Z6-01 6 33371639 33371639 G A KIFC1 Silent p.E163E 0.11 TCGA-LT-A5Z6-01 6 35803215 35803215 G C SRPK1 Missense_Mutation p.L612V 0.24 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 6 39284636 39284636 C A KCNK16 Nonsense_Mutation p.E195* 0.50 TCGA-LT-A5Z6-01 6 41565609 41565609 G A FOXP4 Missense_Mutation p.D606N 0.24 tolerated(0.08) possibly_damaging(0.471) TCGA-LT-A5Z6-01 6 42975223 42975223 C T PPP2R5D Silent p.I235I 0.34 TCGA-LT-A5Z6-01 6 46293255 46293255 C T RCAN2 Intron 0.44 TCGA-LT-A5Z6-01 6 51890270 51890270 G A PKHD1 Silent p.S1446S 0.31 TCGA-LT-A5Z6-01 6 72678741 72678741 G A RIMS1 Missense_Mutation p.E74K 0.11 tolerated(0.5) probably_damaging(0.952) TCGA-LT-A5Z6-01 6 96971044 96971044 G C UFL1 Missense_Mutation p.E34Q 0.19 deleterious(0) probably_damaging(0.977) TCGA-LT-A5Z6-01 7 100304612 100304612 G A POP7 Silent p.Q53Q 0.11 TCGA-LT-A5Z6-01 7 100491563 100491563 C T ACHE Silent p.Q97Q 0.07 TCGA-LT-A5Z6-01 7 100682066 100682066 C G MUC17 Missense_Mutation p.P2457A 0.10 benign(0.347) TCGA-LT-A5Z6-01 7 100806354 100806354 C T VGF Missense_Mutation p.E591K 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-LT-A5Z6-01 7 105672922 105672922 G C CDHR3 Missense_Mutation p.E813Q 0.07 deleterious(0.03) benign(0.025) TCGA-LT-A5Z6-01 7 115580961 115580961 G A TFEC Missense_Mutation p.H230Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-LT-A5Z6-01 7 1195098 1195098 C T ZFAND2A Silent p.K91K 0.22 TCGA-LT-A5Z6-01 7 131188981 131188981 C A PODXL 3'UTR 0.44 TCGA-LT-A5Z6-01 7 132192779 132192779 G C PLXNA4 Missense_Mutation p.S225W 0.39 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 7 135303229 135303229 C T NUP205 Missense_Mutation p.H1281Y 0.11 deleterious(0.04) possibly_damaging(0.904) TCGA-LT-A5Z6-01 7 148507438 148507438 G C EZH2 Missense_Mutation p.F672L 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-LT-A5Z6-01 7 15240801 15240801 G A AGMO 3'UTR 0.67 TCGA-LT-A5Z6-01 7 152549243 152549243 C T ACTR3B Silent p.F328F 0.09 TCGA-LT-A5Z6-01 7 15427049 15427049 G A AGMO Silent p.L313L 0.06 TCGA-LT-A5Z6-01 7 154746030 154746030 G T PAXIP1 Missense_Mutation p.S919Y 0.08 deleterious(0) unknown(0) TCGA-LT-A5Z6-01 7 154746077 154746077 G A PAXIP1 Silent p.L903L 0.07 TCGA-LT-A5Z6-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.31 tolerated(0.1) benign(0.189) TCGA-LT-A5Z6-01 7 2404018 2404018 G C EIF3B Missense_Mutation p.E337D 0.03 tolerated(0.21) possibly_damaging(0.748) TCGA-LT-A5Z6-01 7 2583486 2583486 C T BRAT1 Missense_Mutation p.E181K 0.50 tolerated(0.71) benign(0.004) TCGA-LT-A5Z6-01 7 26224762 26224762 G A NFE2L3 Missense_Mutation p.D482N 0.06 tolerated(0.22) benign(0.004) TCGA-LT-A5Z6-01 7 2976844 2976844 G A CARD11 Nonsense_Mutation p.Q390* 0.44 TCGA-LT-A5Z6-01 7 34698054 34698054 C T NPSR1 Silent p.F10F 0.11 TCGA-LT-A5Z6-01 7 37960810 37960810 G A EPDR1 Missense_Mutation p.R90K 0.07 tolerated(0.23) benign(0.017) TCGA-LT-A5Z6-01 7 38812119 38812119 T A VPS41 Intron 0.38 TCGA-LT-A5Z6-01 7 39504154 39504154 G A POU6F2 Missense_Mutation p.E649K 0.36 deleterious(0) unknown(0) TCGA-LT-A5Z6-01 7 40134595 40134595 C G CDK13 3'UTR 0.04 TCGA-LT-A5Z6-01 7 43548753 43548753 G C HECW1 Intron 0.32 TCGA-LT-A5Z6-01 7 43992405 43992405 C T UBE2D4 3'UTR 0.27 TCGA-LT-A5Z6-01 7 44560692 44560692 G A NPC1L1 Silent p.C993C 0.43 TCGA-LT-A5Z6-01 7 4839012 4839012 G C RADIL Silent p.L1075L 0.34 TCGA-LT-A5Z6-01 7 64452733 64452733 G C ERV3-1 Silent p.V224V 0.26 TCGA-LT-A5Z6-01 7 75178285 75178285 C G HIP1 Missense_Mutation p.R770S 0.06 tolerated(0.06) benign(0.025) TCGA-LT-A5Z6-01 7 76111940 76111940 C T DTX2 Silent p.V128V 0.52 TCGA-LT-A5Z6-01 7 77973278 77973278 C T MAGI2 Splice_Site p.X409_splice 0.09 TCGA-LT-A5Z6-01 7 92733606 92733606 G A SAMD9 Missense_Mutation p.S602L 0.46 deleterious(0) benign(0.282) TCGA-LT-A5Z6-01 7 96650245 96650245 C A DLX5 Nonsense_Mutation p.E225* 0.10 TCGA-LT-A5Z6-01 7 98579413 98579413 G C TRRAP Missense_Mutation p.E2879Q 0.35 benign(0.196) TCGA-LT-A5Z6-01 7 99581017 99581017 C T AZGP1P1 RNA 0.19 TCGA-LT-A5Z6-01 7 99688744 99688744 G A COPS6 Missense_Mutation p.M206I 0.10 tolerated(0.15) benign(0.088) TCGA-LT-A5Z6-01 7 99725796 99725796 G C MBLAC1 Missense_Mutation p.D260H 0.42 deleterious_low_confidence(0.04) benign(0.399) TCGA-LT-A5Z6-01 8 100133670 100133670 C T VPS13B Silent p.F401F 0.27 TCGA-LT-A5Z6-01 8 101299952 101299952 G C RNF19A Missense_Mutation p.H151D 0.12 tolerated(0.26) benign(0.004) TCGA-LT-A5Z6-01 8 101300254 101300254 G A RNF19A Missense_Mutation p.S50F 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-LT-A5Z6-01 8 10465082 10465082 C T RP1L1 Missense_Mutation p.E2176K 0.40 unknown(0) TCGA-LT-A5Z6-01 8 105361548 105361548 A C DCSTAMP Missense_Mutation p.E256D 0.33 deleterious(0.04) benign(0.443) TCGA-LT-A5Z6-01 8 109001415 109001415 C A RSPO2 Missense_Mutation p.G51V 0.14 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 8 11703196 11703196 G C CTSB Missense_Mutation p.S299C 0.13 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 8 120638874 120638874 G C ENPP2 Missense_Mutation p.R75G 0.07 deleterious(0.01) probably_damaging(0.94) TCGA-LT-A5Z6-01 8 132957112 132957112 C T EFR3A Missense_Mutation p.R70C 0.68 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 8 144654813 144654813 C T MROH6 Silent p.L24L 0.18 TCGA-LT-A5Z6-01 8 1616628 1616628 G A DLGAP2 Silent p.Q568Q 0.40 TCGA-LT-A5Z6-01 8 18080037 18080037 C G NAT1 Missense_Mutation p.L223V 0.19 deleterious(0.04) benign(0.327) TCGA-LT-A5Z6-01 8 18430136 18430137 - A PSD3 Frame_Shift_Ins p.A896Cfs*20 0.32 TCGA-LT-A5Z6-01 8 24774736 24774736 C T NEFM Silent p.I456I 0.06 TCGA-LT-A5Z6-01 8 24813082 24813082 G A CTD-2168K21.2 5'Flank 0.12 TCGA-LT-A5Z6-01 8 28186802 28186802 T G PNOC Splice_Site p.X42_splice 0.42 TCGA-LT-A5Z6-01 8 39836651 39836651 G C IDO2 Silent p.L100L 0.17 TCGA-LT-A5Z6-01 8 56015489 56015489 C T XKR4 Silent p.L147L 0.46 TCGA-LT-A5Z6-01 8 63998555 63998555 G T TTPA Nonsense_Mutation p.S9* 0.93 TCGA-LT-A5Z6-01 8 70498671 70498671 G A SULF1 Silent p.K164K 0.11 TCGA-LT-A5Z6-01 8 73849963 73849963 G C KCNB2 Missense_Mutation p.Q791H 0.36 tolerated_low_confidence(0.07) benign(0.401) TCGA-LT-A5Z6-01 8 82606820 82606820 C G SLC10A5 Missense_Mutation p.D130H 0.05 deleterious(0.02) benign(0.299) TCGA-LT-A5Z6-01 8 87878705 87878705 C T CNBD1 5'UTR 0.13 TCGA-LT-A5Z6-01 8 8887448 8887448 C T ERI1 Silent p.I318I 0.15 TCGA-LT-A5Z6-01 8 92086094 92086094 G C OTUD6B Silent p.V120V 0.38 TCGA-LT-A5Z6-01 8 94805473 94805473 G A TMEM67 Silent p.L541L 0.14 TCGA-LT-A5Z6-01 8 95403936 95403936 G A RAD54B Silent p.F570F 0.11 TCGA-LT-A5Z6-01 8 95507120 95507120 G C KIAA1429 Missense_Mutation p.Q1537E 0.08 tolerated(0.25) probably_damaging(0.914) TCGA-LT-A5Z6-01 8 95653664 95653664 C T ESRP1 Silent p.L40L 0.27 TCGA-LT-A5Z6-01 8 98289185 98289185 G C TSPYL5 Missense_Mutation p.F296L 0.14 deleterious(0) probably_damaging(0.998) TCGA-LT-A5Z6-01 9 102595804 102595804 G A NR4A3 Intron 0.07 TCGA-LT-A5Z6-01 9 104302628 104302628 G A RNF20 Silent p.L91L 0.08 TCGA-LT-A5Z6-01 9 106876995 106876995 G C SMC2 Missense_Mutation p.R519T 0.06 tolerated(0.21) possibly_damaging(0.457) TCGA-LT-A5Z6-01 9 107379862 107379862 C G OR13C9 Missense_Mutation p.L208F 0.18 tolerated(0.21) possibly_damaging(0.815) TCGA-LT-A5Z6-01 9 111795591 111795591 G A TMEM245 Nonsense_Mutation p.Q864* 0.13 TCGA-LT-A5Z6-01 9 114304066 114304066 G A ZNF483 Missense_Mutation p.R284K 0.36 tolerated(0.98) benign(0) TCGA-LT-A5Z6-01 9 114842384 114842384 G C SUSD1 Missense_Mutation p.I512M 0.40 tolerated(0.59) benign(0.002) TCGA-LT-A5Z6-01 9 116045011 116045011 G C PRPF4 Missense_Mutation p.E161Q 0.27 tolerated(0.15) benign(0.04) TCGA-LT-A5Z6-01 9 117792633 117792633 C T TNC Missense_Mutation p.G1991E 0.41 deleterious(0) probably_damaging(1) TCGA-LT-A5Z6-01 9 125377922 125377922 G A OR1Q1 Missense_Mutation p.M302I 0.38 tolerated(0.1) benign(0.043) TCGA-LT-A5Z6-01 9 127684031 127684031 C G GOLGA1 Missense_Mutation p.Q234H 0.07 deleterious(0.04) possibly_damaging(0.897) TCGA-LT-A5Z6-01 9 130167104 130167104 C T SLC2A8 Silent p.V328V 0.29 TCGA-LT-A5Z6-01 9 130580886 130580886 C T ENG Intron 0.31 TCGA-LT-A5Z6-01 9 130982618 130982618 C G DNM1 Missense_Mutation p.Q283E 0.47 deleterious(0.02) benign(0.094) TCGA-LT-A5Z6-01 9 131022866 131022866 C T GOLGA2 Missense_Mutation p.E519K 0.06 tolerated(0.07) possibly_damaging(0.476) TCGA-LT-A5Z6-01 9 140135806 140135806 C T TUBB4B 5'UTR 0.09 TCGA-LT-A5Z6-01 9 140508182 140508182 C G ARRDC1 Missense_Mutation p.I132M 0.39 tolerated(0.08) possibly_damaging(0.588) TCGA-LT-A5Z6-01 9 140846797 140846797 C A CACNA1B Missense_Mutation p.F346L 0.08 deleterious(0.04) benign(0.069) TCGA-LT-A5Z6-01 9 19346901 19346901 G A DENND4C Silent p.L1329L 0.39 TCGA-LT-A5Z6-01 9 32485206 32485206 C G DDX58 Missense_Mutation p.E483Q 0.39 deleterious(0.04) benign(0.399) TCGA-LT-A5Z6-01 9 34689755 34689755 G T CCL19 3'UTR 0.07 TCGA-LT-A5Z6-01 9 34709657 34709657 G A CCL21 Nonsense_Mutation p.Q71* 0.08 TCGA-LT-A5Z6-01 9 35381168 35381168 G T UNC13B Nonsense_Mutation p.E734* 0.27 TCGA-LT-A5Z6-01 9 35698317 35698317 C T TLN1 Intron 0.10 TCGA-LT-A5Z6-01 9 79003561 79003561 G A RFK Silent p.I82I 0.14 TCGA-LT-A5Z6-01 9 90584767 90584767 C T CDK20 Missense_Mutation p.E211K 0.09 deleterious(0.03) possibly_damaging(0.612) TCGA-LT-A5Z6-01 9 93376141 93376141 C T DIRAS2 5'UTR 0.45 TCGA-LT-A5Z6-01 9 95077797 95077797 C T NOL8 Missense_Mutation p.M370I 0.46 tolerated(0.35) benign(0.002) TCGA-LT-A5Z6-01 9 990717 990717 G A DMRT3 Silent p.A377A 0.25 TCGA-LT-A5Z6-01 X 100169834 100169834 G A XKRX Silent p.L281L 0.19 TCGA-LT-A5Z6-01 X 10058874 10058874 G A WWC3 Missense_Mutation p.M147I 0.58 deleterious(0.03) benign(0.094) TCGA-LT-A5Z6-01 X 102337948 102337948 T A NXF3 Missense_Mutation p.R225S 0.21 tolerated(0.66) benign(0.016) TCGA-LT-A5Z6-01 X 107334822 107334822 C G PSMD10 5'UTR 0.32 TCGA-LT-A5Z6-01 X 118708871 118708871 G T UBE2A Nonsense_Mutation p.E18* 0.21 TCGA-LT-A5Z6-01 X 125686235 125686235 C T DCAF12L1 Silent p.T119T 0.24 TCGA-LT-A5Z6-01 X 129630051 129630051 G C RP1-274L7.1 Intron 0.26 TCGA-LT-A5Z6-01 X 130678774 130678774 C T OR13H1 Missense_Mutation p.H243Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-LT-A5Z6-01 X 150348265 150348265 C T GPR50 Silent p.L70L 0.86 TCGA-LT-A5Z6-01 X 152991336 152991336 G A ABCD1 Silent p.A205A 0.24 TCGA-LT-A5Z6-01 X 154007444 154007444 C T MPP1 3'UTR 0.82 TCGA-LT-A5Z6-01 X 27998204 27998204 G A DCAF8L1 Silent p.L416L 0.83 TCGA-LT-A5Z6-01 X 38020253 38020253 C G SRPX Missense_Mutation p.K236N 0.25 deleterious(0.04) possibly_damaging(0.626) TCGA-LT-A5Z6-01 X 53115486 53115486 G A TSPYL2 Missense_Mutation p.E638K 0.15 deleterious_low_confidence(0.04) unknown(0) TCGA-LT-A5Z6-01 X 53441960 53441960 C T SMC1A Missense_Mutation p.E90K 0.10 tolerated(0.16) benign(0.01) TCGA-LT-A5Z6-01 X 55185598 55185598 C G FAM104B Missense_Mutation p.K28N 0.19 deleterious(0.04) possibly_damaging(0.744) TCGA-LT-A5Z6-01 X 70357034 70357034 C T MED12 Intron 0.21 TCGA-LT-A5Z6-01 X 70598722 70598722 G A TAF1 Missense_Mutation p.E421K 0.82 deleterious(0.01) probably_damaging(0.998) TCGA-LT-A5Z6-01 X 89177643 89177643 G A TGIF2LX Missense_Mutation p.A187T 0.16 tolerated(0.1) probably_damaging(0.977) TCGA-LT-A8JT-01 10 116931119 116931119 G C ATRNL1 Intron 0.48 TCGA-LT-A8JT-01 11 125523701 125523701 G A CHEK1 Missense_Mutation p.E432K 0.38 deleterious(0.01) benign(0.245) TCGA-LT-A8JT-01 11 55418648 55418648 T C OR4S2 Missense_Mutation p.I90T 0.40 deleterious(0) probably_damaging(0.997) TCGA-LT-A8JT-01 11 55419044 55419044 C T OR4S2 Missense_Mutation p.S222F 0.38 deleterious(0.01) probably_damaging(0.962) TCGA-LT-A8JT-01 11 5758410 5758410 C G OR56B1 Missense_Mutation p.L222V 0.75 deleterious(0.01) possibly_damaging(0.654) TCGA-LT-A8JT-01 11 61096911 61096911 C A DDB1 Missense_Mutation p.R158L 0.48 deleterious(0) probably_damaging(0.984) TCGA-LT-A8JT-01 11 61110061 61110061 G C DAK Missense_Mutation p.E236Q 0.47 tolerated(0.12) benign(0.103) TCGA-LT-A8JT-01 11 66319032 66319032 T C ACTN3 3'UTR 0.43 TCGA-LT-A8JT-01 11 74907673 74907673 C A SLCO2B1 Nonsense_Mutation p.C516* 0.43 TCGA-LT-A8JT-01 11 94731861 94731863 AGA - KDM4D In_Frame_Del p.Q442_I443delinsL 0.33 TCGA-LT-A8JT-01 12 133225540 133225540 G A POLE Missense_Mutation p.A1375V 0.12 tolerated(0.07) benign(0.001) TCGA-LT-A8JT-01 12 14772205 14772205 G A GUCY2C Missense_Mutation p.R939C 0.32 deleterious(0) probably_damaging(1) TCGA-LT-A8JT-01 12 29604454 29604454 G A OVCH1 Missense_Mutation p.T860I 0.37 tolerated(0.05) benign(0.01) TCGA-LT-A8JT-01 12 53606940 53606940 C T RARG Missense_Mutation p.R369Q 0.42 deleterious(0) probably_damaging(1) TCGA-LT-A8JT-01 12 69981312 69981312 G A CCT2 Missense_Mutation p.D58N 0.39 tolerated(0.69) benign(0.001) TCGA-LT-A8JT-01 12 7973850 7973850 C A SLC2A14 Silent p.A335A 0.38 TCGA-LT-A8JT-01 14 57676693 57676693 T C EXOC5 Missense_Mutation p.N567S 0.27 tolerated(0.89) benign(0.001) TCGA-LT-A8JT-01 14 59112617 59112617 G A DACT1 Missense_Mutation p.E426K 0.41 deleterious(0) possibly_damaging(0.795) TCGA-LT-A8JT-01 15 48703282 48703282 C G FBN1 Missense_Mutation p.E2841Q 0.40 benign(0.122) TCGA-LT-A8JT-01 15 73566290 73566290 G A NEO1 Missense_Mutation p.R1035Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-LT-A8JT-01 16 2150220 2150220 G A PKD1 Missense_Mutation p.S3220L 0.44 probably_damaging(0.999) TCGA-LT-A8JT-01 16 3170214 3170214 A T ZNF205 Missense_Mutation p.N518I 0.59 deleterious(0) possibly_damaging(0.892) TCGA-LT-A8JT-01 16 3843501 3843501 G A CREBBP Nonsense_Mutation p.Q368* 0.28 TCGA-LT-A8JT-01 17 21087713 21087713 C T DHRS7B Nonsense_Mutation p.Q186* 0.53 TCGA-LT-A8JT-01 17 27284414 27284414 G A SEZ6 Missense_Mutation p.R816C 0.09 deleterious(0) probably_damaging(0.998) TCGA-LT-A8JT-01 17 41244810 41244810 T C BRCA1 Missense_Mutation p.N913S 0.46 tolerated(0.15) benign(0.003) TCGA-LT-A8JT-01 17 54428211 54428211 C T ANKFN1 Silent p.N94N 0.32 TCGA-LT-A8JT-01 17 60342553 60342553 G A TBC1D3P2 3'Flank 0.22 TCGA-LT-A8JT-01 17 7211779 7211779 C T EIF5A Intron 0.57 TCGA-LT-A8JT-01 17 7405321 7405321 G C POLR2A Missense_Mutation p.E818Q 0.53 probably_damaging(0.996) TCGA-LT-A8JT-01 18 74154497 74154497 C T ZNF516 Missense_Mutation p.A172T 0.55 tolerated(0.21) possibly_damaging(0.521) TCGA-LT-A8JT-01 18 77513748 77513748 G C CTDP1 Missense_Mutation p.E948D 0.65 deleterious(0.01) probably_damaging(0.999) TCGA-LT-A8JT-01 19 22157139 22157139 C A ZNF208 Nonsense_Mutation p.E233* 0.31 TCGA-LT-A8JT-01 19 38903431 38903431 G A RASGRP4 Silent p.L521L 0.50 TCGA-LT-A8JT-01 19 4504540 4504540 C T PLIN4 Silent p.E1335E 0.40 TCGA-LT-A8JT-01 19 45495519 45495519 C T CLPTM1 Silent p.F528F 0.42 TCGA-LT-A8JT-01 19 49934010 49934010 G A SLC17A7 Silent p.V483V 0.41 TCGA-LT-A8JT-01 19 58367538 58367538 G A CTD-2583A14.10 Missense_Mutation p.E34K 0.37 deleterious(0.02) probably_damaging(0.99) TCGA-LT-A8JT-01 1 110466277 110466277 C T CSF1 Missense_Mutation p.S345L 0.40 tolerated(0.08) benign(0.056) TCGA-LT-A8JT-01 1 151400865 151400865 G A POGZ Missense_Mutation p.P198L 0.48 deleterious(0) probably_damaging(0.999) TCGA-LT-A8JT-01 1 22073598 22073598 G C USP48 Nonsense_Mutation p.S318* 0.36 TCGA-LT-A8JT-01 1 245851636 245851636 C T KIF26B Missense_Mutation p.T1784M 0.31 tolerated(0.08) unknown(0) TCGA-LT-A8JT-01 1 53493690 53493690 G A SCP2 Missense_Mutation p.D429N 0.21 tolerated(0.14) benign(0.182) TCGA-LT-A8JT-01 1 53930316 53930316 G C DMRTB1 Missense_Mutation p.E253Q 0.45 deleterious(0.04) benign(0.346) TCGA-LT-A8JT-01 20 36676760 36676760 G A RPRD1B Missense_Mutation p.E98K 0.22 deleterious(0.04) benign(0.082) TCGA-LT-A8JT-01 20 60754336 60754336 C T SS18L1 3'UTR 0.38 TCGA-LT-A8JT-01 20 61937341 61937341 C T COL20A1 Missense_Mutation p.A149V 0.24 tolerated(0.28) benign(0.003) TCGA-LT-A8JT-01 20 62593725 62593725 G A ZNF512B Silent p.L722L 0.34 TCGA-LT-A8JT-01 21 45175914 45175914 A G PDXK Silent p.P303P 0.33 TCGA-LT-A8JT-01 22 26157022 26157022 C G MYO18B 5'UTR 0.34 TCGA-LT-A8JT-01 22 29440878 29440878 G A ZNRF3 Silent p.Q248Q 0.42 TCGA-LT-A8JT-01 22 29921855 29921855 T C THOC5 Missense_Mutation p.M383V 0.39 tolerated(0.58) benign(0) TCGA-LT-A8JT-01 2 11052615 11052615 C T KCNF1 Silent p.D21D 0.50 TCGA-LT-A8JT-01 2 185802905 185802905 G A ZNF804A Missense_Mutation p.A928T 0.37 tolerated(0.63) benign(0.034) TCGA-LT-A8JT-01 2 198621210 198621210 G A BOLL Missense_Mutation p.A236V 0.62 tolerated(0.1) benign(0.381) TCGA-LT-A8JT-01 2 200137255 200137255 C T SATB2 Silent p.G627G 0.50 TCGA-LT-A8JT-01 2 219529961 219529961 C T RNF25 Missense_Mutation p.G195S 0.38 tolerated(0.11) probably_damaging(0.976) TCGA-LT-A8JT-01 2 24965052 24965052 G A NCOA1 Missense_Mutation p.A1235T 0.07 tolerated(0.09) benign(0.001) TCGA-LT-A8JT-01 2 25053575 25053575 C T ADCY3 Intron 0.35 TCGA-LT-A8JT-01 2 36771575 36771575 G A CRIM1 Missense_Mutation p.E894K 0.41 tolerated(0.38) benign(0.022) TCGA-LT-A8JT-01 2 48027480 48027480 T C MSH6 Silent p.Y786Y 0.43 TCGA-LT-A8JT-01 3 38601826 38601826 C T SCN5A Missense_Mutation p.V1353M 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-LT-A8JT-01 3 52540758 52540758 G C STAB1 Silent p.V627V 0.55 TCGA-LT-A8JT-01 3 62307623 62307623 G A C3orf14 Missense_Mutation p.M24I 0.22 tolerated(0.43) benign(0.006) TCGA-LT-A8JT-01 3 9831514 9831514 G A TADA3 Missense_Mutation p.P114L 0.08 tolerated(0.45) benign(0) TCGA-LT-A8JT-01 4 123277799 123277799 G T KIAA1109 Nonsense_Mutation p.E4842* 0.51 TCGA-LT-A8JT-01 4 13604524 13604524 C T BOD1L1 Missense_Mutation p.E1334K 0.10 benign(0.012) TCGA-LT-A8JT-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 1.00 deleterious(0.01) possibly_damaging(0.594) TCGA-LT-A8JT-01 4 74005355 74005355 G T ANKRD17 Missense_Mutation p.A993E 0.45 benign(0.22) TCGA-LT-A8JT-01 5 140182130 140182130 G A PCDHA3 Missense_Mutation p.D450N 0.40 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-LT-A8JT-01 5 140240962 140240962 G A AC005609.1 3'UTR 0.36 TCGA-LT-A8JT-01 5 140573639 140573639 C T PCDHB10 Missense_Mutation p.S505F 0.47 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-LT-A8JT-01 5 140682810 140682810 C A SLC25A2 Missense_Mutation p.G208V 0.35 deleterious(0.03) probably_damaging(0.967) TCGA-LT-A8JT-01 5 140783914 140783914 C T PCDHGA9 Silent p.N465N 0.43 TCGA-LT-A8JT-01 5 150278077 150278077 G A ZNF300 Nonsense_Mutation p.Q35* 0.33 TCGA-LT-A8JT-01 5 178339631 178339631 G T ZFP2 5'UTR 0.40 TCGA-LT-A8JT-01 5 74016256 74016256 C T HEXB Missense_Mutation p.T474I 0.42 deleterious(0) possibly_damaging(0.633) TCGA-LT-A8JT-01 5 80555029 80555029 G A CKMT2 Missense_Mutation p.G324R 0.41 deleterious(0) probably_damaging(0.999) TCGA-LT-A8JT-01 5 9629469 9629469 C T TAS2R1 Missense_Mutation p.A226T 0.61 tolerated(0.06) probably_damaging(0.918) TCGA-LT-A8JT-01 6 144858748 144858748 G A UTRN Silent p.K2088K 0.56 TCGA-LT-A8JT-01 6 155577589 155577589 C T TIAM2 Intron 0.44 TCGA-LT-A8JT-01 6 41545771 41545771 G T FOXP4 Silent p.L84L 0.25 TCGA-LT-A8JT-01 6 4892508 4892508 G A CDYL Missense_Mutation p.E196K 0.30 deleterious(0.04) possibly_damaging(0.778) TCGA-LT-A8JT-01 6 74228777 74228777 A C EEF1A1 Missense_Mutation p.Y167D 0.29 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-LT-A8JT-01 7 107418651 107418651 G C SLC26A3 Missense_Mutation p.Q495E 0.60 tolerated(1) benign(0.005) TCGA-LT-A8JT-01 7 111981009 111981009 G A ZNF277 Silent p.V364V 0.40 TCGA-LT-A8JT-01 7 20824807 20824807 G A SP8 Missense_Mutation p.S210L 0.50 tolerated(0.65) benign(0.205) TCGA-LT-A8JT-01 7 87011766 87011766 C G CROT Missense_Mutation p.S431C 0.33 deleterious(0.01) possibly_damaging(0.852) TCGA-LT-A8JT-01 8 105511544 105511544 C T LRP12 Splice_Site p.X159_splice 0.04 TCGA-LT-A8JT-01 8 139165447 139165447 C T FAM135B Missense_Mutation p.S424N 0.40 tolerated(0.32) benign(0.003) TCGA-LT-A8JT-01 8 140922448 140922448 C T TRAPPC9 Silent p.E1067E 0.33 TCGA-LT-A8JT-01 8 141678473 141678473 C T PTK2 Silent p.S933S 0.40 TCGA-LT-A8JT-01 8 68184161 68184161 G A ARFGEF1 Silent p.L450L 0.06 TCGA-LT-A8JT-01 9 119158874 119158874 C T PAPPA Silent p.L1621L 0.82 TCGA-LT-A8JT-01 9 126783463 126783463 G T LHX2 Silent p.T271T 0.74 TCGA-LT-A8JT-01 9 131380300 131380302 ACA - SPTAN1 In_Frame_Del p.N1839del 0.68 TCGA-LT-A8JT-01 9 27204930 27204930 G A TEK Missense_Mutation p.G744E 0.77 deleterious(0.03) benign(0.03) TCGA-LT-A8JT-01 X 142795600 142795600 C T SPANXN2 Splice_Site p.X27_splice 0.04 TCGA-LT-A8JT-01 X 144906469 144906469 C T SLITRK2 Silent p.I842I 0.35 TCGA-LT-A8JT-01 X 153713794 153713794 G C UBL4A 3'UTR 0.53 TCGA-LT-A8JT-01 X 154182203 154182203 C G F8 Missense_Mutation p.E623Q 0.41 tolerated(1) benign(0.001) TCGA-LT-A8JT-01 X 23397902 23397902 C T PTCHD1 Silent p.D182D 0.38 TCGA-LT-A8JT-01 X 44945107 44945107 C G KDM6A Intron 0.28 TCGA-LT-A8JT-01 X 77381533 77381533 T C PGK1 3'UTR 0.50 TCGA-MV-A51V-01 10 100184097 100184097 G C HPS1 Missense_Mutation p.S457C 0.14 deleterious(0) probably_damaging(0.986) TCGA-MV-A51V-01 10 101604099 101604099 G T ABCC2 Missense_Mutation p.K1288N 0.09 tolerated(0.28) benign(0.015) TCGA-MV-A51V-01 10 101716810 101716810 G C DNMBP Missense_Mutation p.Q141E 0.41 tolerated(0.83) benign(0.001) TCGA-MV-A51V-01 10 101716848 101716848 G C DNMBP Nonsense_Mutation p.S128* 0.43 TCGA-MV-A51V-01 10 102047997 102047997 G C PKD2L1 3'UTR 0.56 TCGA-MV-A51V-01 10 102703810 102703810 G A FAM178A Silent p.G894G 0.18 TCGA-MV-A51V-01 10 102743315 102743315 C A SEMA4G Silent p.L653L 0.34 TCGA-MV-A51V-01 10 102762206 102762206 G A LZTS2 5'UTR 0.55 TCGA-MV-A51V-01 10 103826414 103826414 G C HPS6 Missense_Mutation p.E395Q 0.38 tolerated(0.14) possibly_damaging(0.828) TCGA-MV-A51V-01 10 103826444 103826444 G C HPS6 Missense_Mutation p.E405Q 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-MV-A51V-01 10 104245387 104245387 G C ACTR1A Missense_Mutation p.S140C 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-MV-A51V-01 10 104486864 104486864 C G SFXN2 Missense_Mutation p.F94L 0.44 tolerated(0.09) probably_damaging(0.999) TCGA-MV-A51V-01 10 105110884 105110884 C G PCGF6 5'UTR 0.46 TCGA-MV-A51V-01 10 105344923 105344923 C T NEURL1 Missense_Mutation p.S427L 0.31 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 10 105947216 105947216 C T WDR96 Silent p.L574L 0.11 TCGA-MV-A51V-01 10 1087390 1087390 C G IDI1 Missense_Mutation p.D198H 0.11 deleterious(0) probably_damaging(0.994) TCGA-MV-A51V-01 10 111878366 111878366 G C ADD3 Missense_Mutation p.E197Q 0.09 deleterious(0.02) benign(0.12) TCGA-MV-A51V-01 10 112058423 112058423 G C SMNDC1 Silent p.V82V 0.13 TCGA-MV-A51V-01 10 112350863 112350863 C T SMC3 Silent p.V595V 0.22 TCGA-MV-A51V-01 10 114220280 114220280 C A VTI1A Intron 0.47 TCGA-MV-A51V-01 10 115515071 115515071 G T PLEKHS1 Intron 0.17 TCGA-MV-A51V-01 10 115609074 115609074 G C DCLRE1A Missense_Mutation p.S597W 0.29 deleterious(0.02) benign(0.002) TCGA-MV-A51V-01 10 115644091 115644091 G A NHLRC2 Missense_Mutation p.E331K 0.14 tolerated(0.75) benign(0.004) TCGA-MV-A51V-01 10 115980411 115980411 G C TDRD1 Missense_Mutation p.R860T 0.29 tolerated(0.15) benign(0.015) TCGA-MV-A51V-01 10 12142258 12142258 C T DHTKD1 Nonsense_Mutation p.Q585* 0.54 TCGA-MV-A51V-01 10 124402926 124402926 C A DMBT1 3'UTR 0.24 TCGA-MV-A51V-01 10 125527999 125527999 C T CPXM2 Intron 0.27 TCGA-MV-A51V-01 10 125769594 125769594 G T CHST15 3'UTR 0.62 TCGA-MV-A51V-01 10 125805644 125805644 G C CHST15 Missense_Mutation p.H29D 0.17 tolerated_low_confidence(0.06) benign(0.021) TCGA-MV-A51V-01 10 126490443 126490443 C T FAM175B Silent p.F15F 0.08 TCGA-MV-A51V-01 10 126495430 126495430 G C FAM175B Missense_Mutation p.E35Q 0.39 deleterious(0.04) probably_damaging(0.983) TCGA-MV-A51V-01 10 127413993 127413993 C G EDRF1 Missense_Mutation p.S206C 0.19 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 10 129874909 129874909 C G PTPRE Missense_Mutation p.H548D 0.09 deleterious(0) probably_damaging(0.915) TCGA-MV-A51V-01 10 13213025 13213025 C G MCM10 Silent p.G37G 0.06 TCGA-MV-A51V-01 10 13330474 13330474 G A PHYH Silent p.L188L 0.24 TCGA-MV-A51V-01 10 133769368 133769368 C G PPP2R2D Missense_Mutation p.F390L 0.21 tolerated(0.06) possibly_damaging(0.47) TCGA-MV-A51V-01 10 13628974 13628974 C G PRPF18 5'UTR 0.11 TCGA-MV-A51V-01 10 18250605 18250605 C T SLC39A12 Silent p.L119L 0.08 TCGA-MV-A51V-01 10 20534353 20534353 C T PLXDC2 Silent p.V464V 0.08 TCGA-MV-A51V-01 10 28900809 28900809 C G WAC Missense_Mutation p.I465M 0.09 tolerated(0.1) benign(0.003) TCGA-MV-A51V-01 10 294905 294905 G C ZMYND11 Missense_Mutation p.Q521H 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-MV-A51V-01 10 29813602 29813602 C G SVIL Missense_Mutation p.Q795H 0.19 deleterious(0) possibly_damaging(0.687) TCGA-MV-A51V-01 10 32141510 32141510 C G ARHGAP12 Missense_Mutation p.D369H 0.20 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 10 37430868 37430868 G A ANKRD30A Missense_Mutation p.G292E 0.28 tolerated(1) benign(0.044) TCGA-MV-A51V-01 10 43882010 43882010 C G HNRNPF 3'UTR 0.27 TCGA-MV-A51V-01 10 45798742 45798742 G A OR13A1 3'UTR 0.27 TCGA-MV-A51V-01 10 48413967 48413967 C T GDF2 Missense_Mutation p.E301K 0.12 tolerated(0.46) benign(0.124) TCGA-MV-A51V-01 10 52103943 52103943 C T SGMS1 5'UTR 0.29 TCGA-MV-A51V-01 10 5789197 5789197 C T FAM208B Silent p.V1271V 0.12 TCGA-MV-A51V-01 10 63851946 63851946 G C ARID5B Silent p.L908L 0.11 TCGA-MV-A51V-01 10 69804185 69804185 G C HERC4 Nonsense_Mutation p.S121* 0.20 TCGA-MV-A51V-01 10 69882090 69882090 C G MYPN Missense_Mutation p.Q299E 0.11 tolerated(1) benign(0.007) TCGA-MV-A51V-01 10 70442602 70442602 G T TET1 Nonsense_Mutation p.E1642* 0.13 TCGA-MV-A51V-01 10 70930969 70930969 C T VPS26A Missense_Mutation p.H310Y 0.10 tolerated_low_confidence(0.08) benign(0.37) TCGA-MV-A51V-01 10 70940276 70940276 G A SUPV3L1 Missense_Mutation p.D77N 0.28 tolerated(0.09) possibly_damaging(0.495) TCGA-MV-A51V-01 10 74803713 74803713 C G P4HA1 Intron 0.34 TCGA-MV-A51V-01 10 75135898 75135898 C T ANXA7 Silent p.T474T 0.27 TCGA-MV-A51V-01 10 75301492 75301492 G T USP54 Missense_Mutation p.Q193K 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-MV-A51V-01 10 75528642 75528642 G A SEC24C Silent p.V752V 0.26 TCGA-MV-A51V-01 10 76818087 76818087 G C DUPD1 Silent p.L62L 0.17 TCGA-MV-A51V-01 10 7866376 7866376 G C TAF3 Missense_Mutation p.E88Q 0.10 deleterious(0) possibly_damaging(0.572) TCGA-MV-A51V-01 10 79571744 79571744 G T DLG5 Silent p.T1420T 0.32 TCGA-MV-A51V-01 10 82040459 82040459 C T MAT1A Missense_Mutation p.E128K 0.25 deleterious(0.01) benign(0.111) TCGA-MV-A51V-01 10 84745197 84745197 G T NRG3 Missense_Mutation p.D643Y 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.61) TCGA-MV-A51V-01 10 84745419 84745419 C G NRG3 3'Flank 0.12 TCGA-MV-A51V-01 10 87407147 87407147 G T GRID1 Missense_Mutation p.Q669K 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-MV-A51V-01 10 89474820 89474820 G A PAPSS2 Missense_Mutation p.E240K 0.40 deleterious(0.02) benign(0.018) TCGA-MV-A51V-01 10 95557615 95557615 G A LGI1 3'UTR 0.18 TCGA-MV-A51V-01 10 95661013 95661013 C G SLC35G1 Silent p.L288L 0.19 TCGA-MV-A51V-01 10 96030322 96030322 C A PLCE1 Nonsense_Mutation p.S1490* 0.37 TCGA-MV-A51V-01 10 96064362 96064362 G C PLCE1 Missense_Mutation p.R1861T 0.12 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 11 10052690 10052690 C T SBF2 Missense_Mutation p.E103K 0.06 tolerated(0.12) benign(0.001) TCGA-MV-A51V-01 11 101833871 101833871 G A KIAA1377 Missense_Mutation p.G702E 0.06 tolerated(0.22) benign(0.056) TCGA-MV-A51V-01 11 10215531 10215531 G T SBF2 Nonsense_Mutation p.S20* 0.23 TCGA-MV-A51V-01 11 104900516 104900516 C T CASP1 Silent p.K246K 0.27 TCGA-MV-A51V-01 11 107219749 107219749 G C CWF19L2 Missense_Mutation p.L706V 0.09 deleterious(0) probably_damaging(0.934) TCGA-MV-A51V-01 11 108106483 108106483 G C ATM Missense_Mutation p.D140H 0.49 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 11 111431084 111431084 G C LAYN Missense_Mutation p.E350D 0.34 deleterious(0) probably_damaging(0.962) TCGA-MV-A51V-01 11 118106203 118106203 C A MPZL3 Missense_Mutation p.A185S 0.06 tolerated(0.6) benign(0.001) TCGA-MV-A51V-01 11 118373732 118373732 G C KMT2A Missense_Mutation p.L2375F 0.09 benign(0.193) TCGA-MV-A51V-01 11 118374046 118374046 G A KMT2A Missense_Mutation p.R2480Q 0.12 possibly_damaging(0.796) TCGA-MV-A51V-01 11 119044705 119044705 C G NLRX1 Silent p.L249L 0.12 TCGA-MV-A51V-01 11 119228216 119228216 C G USP2 Missense_Mutation p.R529T 0.06 tolerated(0.07) benign(0.341) TCGA-MV-A51V-01 11 121500244 121500244 C T SORL1 Missense_Mutation p.S2206L 0.11 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 11 124135477 124135477 C G OR8G5 Missense_Mutation p.S252C 0.13 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 11 124735528 124735528 C G ROBO3 Missense_Mutation p.L19V 0.21 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-MV-A51V-01 11 1263619 1263619 G T MUC5B Nonsense_Mutation p.E1837* 0.20 TCGA-MV-A51V-01 11 128642733 128642733 G C FLI1 Missense_Mutation p.E148Q 0.05 deleterious(0.02) possibly_damaging(0.769) TCGA-MV-A51V-01 11 22294333 22294333 C G ANO5 Missense_Mutation p.T678S 0.10 deleterious(0.01) benign(0.143) TCGA-MV-A51V-01 11 22646347 22646347 C A FANCF Missense_Mutation p.G337V 0.06 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 11 2434813 2434813 G C TRPM5 Missense_Mutation p.F632L 0.12 tolerated(1) benign(0.255) TCGA-MV-A51V-01 11 28090913 28090913 C G KIF18A Missense_Mutation p.E495Q 0.37 tolerated(0.88) benign(0.024) TCGA-MV-A51V-01 11 32955280 32955280 C G QSER1 Missense_Mutation p.Q697E 0.33 deleterious(0.02) benign(0.243) TCGA-MV-A51V-01 11 32955340 32955340 C G QSER1 Missense_Mutation p.Q717E 0.28 tolerated(0.27) benign(0.304) TCGA-MV-A51V-01 11 33689530 33689530 G T KIAA1549L Nonsense_Mutation p.E1794* 0.18 TCGA-MV-A51V-01 11 34153758 34153758 C G NAT10 Missense_Mutation p.S536C 0.09 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 11 3848722 3848722 G A RHOG 3'UTR 0.48 TCGA-MV-A51V-01 11 45671595 45671595 G C CHST1 Silent p.L293L 0.12 TCGA-MV-A51V-01 11 45928108 45928108 G A C11orf94 3'UTR 0.36 TCGA-MV-A51V-01 11 46686403 46686403 C G ATG13 Nonsense_Mutation p.S298* 0.23 TCGA-MV-A51V-01 11 46801798 46801798 G C CKAP5 Missense_Mutation p.F793L 0.12 tolerated(0.12) benign(0.007) TCGA-MV-A51V-01 11 46806159 46806159 G A CKAP5 Missense_Mutation p.S678L 0.11 tolerated(0.05) benign(0.26) TCGA-MV-A51V-01 11 47445641 47445641 C T PSMC3 Missense_Mutation p.E183K 0.09 deleterious(0.02) possibly_damaging(0.792) TCGA-MV-A51V-01 11 47739054 47739054 C G FNBP4 Missense_Mutation p.E992Q 0.41 deleterious(0.03) benign(0.292) TCGA-MV-A51V-01 11 48175345 48175345 C G PTPRJ Intron 0.16 TCGA-MV-A51V-01 11 4825152 4825152 C G OR52R1 Silent p.L153L 0.11 TCGA-MV-A51V-01 11 49805421 49805421 G A RP11-707M1.1 RNA 0.33 TCGA-MV-A51V-01 11 49830166 49830166 G A RP11-707M1.1 RNA 0.24 TCGA-MV-A51V-01 11 5461914 5461914 C G OR51I1 Missense_Mutation p.M277I 0.23 tolerated(0.14) benign(0.048) TCGA-MV-A51V-01 11 55339883 55339883 G A OR4C16 Missense_Mutation p.E94K 0.21 tolerated(0.12) possibly_damaging(0.711) TCGA-MV-A51V-01 11 55406311 55406311 C G OR4P4 Missense_Mutation p.L160V 0.10 deleterious(0.04) benign(0.17) TCGA-MV-A51V-01 11 55406749 55406749 C T OR4P4 Silent p.L306L 0.11 TCGA-MV-A51V-01 11 55418472 55418472 C T OR4S2 Silent p.F31F 0.22 TCGA-MV-A51V-01 11 5730645 5730645 G C TRIM22 Missense_Mutation p.E422Q 0.19 tolerated(0.11) probably_damaging(0.993) TCGA-MV-A51V-01 11 57310803 57310803 G C SMTNL1 Missense_Mutation p.E248Q 0.09 tolerated(0.08) benign(0.015) TCGA-MV-A51V-01 11 57311136 57311136 G A SMTNL1 Missense_Mutation p.E276K 0.75 deleterious(0) benign(0.265) TCGA-MV-A51V-01 11 5878339 5878339 G C OR52E8 Missense_Mutation p.I198M 0.15 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 11 58978465 58978465 G C MPEG1 Missense_Mutation p.S625C 0.06 tolerated(0.08) possibly_damaging(0.625) TCGA-MV-A51V-01 11 59423063 59423063 G C PATL1 Missense_Mutation p.P322A 0.36 tolerated(0.13) benign(0.049) TCGA-MV-A51V-01 11 5968855 5968855 C T OR56A3 Silent p.L93L 0.06 TCGA-MV-A51V-01 11 605261 605261 C T PHRF1 Missense_Mutation p.S432F 0.20 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 11 60692159 60692159 C T TMEM132A Silent p.G18G 0.52 TCGA-MV-A51V-01 11 62297734 62297734 C T AHNAK Silent p.V1385V 0.31 TCGA-MV-A51V-01 11 62298564 62298564 C T AHNAK Missense_Mutation p.D1109N 0.26 probably_damaging(0.998) TCGA-MV-A51V-01 11 62299113 62299113 C T AHNAK Missense_Mutation p.E926K 0.27 probably_damaging(0.937) TCGA-MV-A51V-01 11 62364271 62364271 C G MTA2 Missense_Mutation p.R240S 0.08 tolerated(0.14) benign(0.039) TCGA-MV-A51V-01 11 62365548 62365548 C G MTA2 Missense_Mutation p.E146D 0.14 deleterious(0) probably_damaging(0.978) TCGA-MV-A51V-01 11 62370239 62370239 G C EML3 Missense_Mutation p.R827G 0.60 deleterious(0.01) benign(0.245) TCGA-MV-A51V-01 11 62414512 62414512 G C INTS5 Missense_Mutation p.L1014V 0.51 tolerated_low_confidence(0.15) benign(0.182) TCGA-MV-A51V-01 11 62416032 62416032 G A INTS5 Missense_Mutation p.S507F 0.55 deleterious(0.02) probably_damaging(0.952) TCGA-MV-A51V-01 11 62416959 62416959 G A INTS5 Missense_Mutation p.S198L 0.56 deleterious(0) possibly_damaging(0.585) TCGA-MV-A51V-01 11 62437138 62437138 G A C11orf48 Silent p.F96F 0.09 TCGA-MV-A51V-01 11 63990794 63990794 G C FERMT3 Missense_Mutation p.E612Q 0.15 tolerated(0.5) possibly_damaging(0.705) TCGA-MV-A51V-01 11 6424977 6424977 G A APBB1 Missense_Mutation p.S266L 0.33 deleterious(0) possibly_damaging(0.778) TCGA-MV-A51V-01 11 64366309 64366309 G C SLC22A12 Silent p.L328L 0.09 TCGA-MV-A51V-01 11 64375395 64375395 G A NRXN2 Missense_Mutation p.P1471L 0.78 tolerated(0.06) benign(0) TCGA-MV-A51V-01 11 64851144 64851144 G A CDCA5 Missense_Mutation p.S33L 0.17 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 11 64852679 64852679 G A ZFPL1 Silent p.T65T 0.14 TCGA-MV-A51V-01 11 64981518 64981518 G A CAPN1 3'Flank 0.67 TCGA-MV-A51V-01 11 65270182 65270182 C G MALAT1 RNA 0.11 TCGA-MV-A51V-01 11 65308409 65308409 G C LTBP3 Silent p.L970L 0.15 TCGA-MV-A51V-01 11 65623630 65623630 C G CFL1 Silent p.V29V 0.15 TCGA-MV-A51V-01 11 66472827 66472827 T C SPTBN2 Silent p.S640S 0.47 TCGA-MV-A51V-01 11 67020969 67020969 C G KDM2A Missense_Mutation p.S993C 0.09 tolerated(0.09) benign(0.007) TCGA-MV-A51V-01 11 67074848 67074848 C T SSH3 Silent p.F181F 0.22 TCGA-MV-A51V-01 11 67372204 67372204 C G C11orf72 Missense_Mutation p.D113H 0.40 probably_damaging(0.934) TCGA-MV-A51V-01 11 67372436 67372436 C G C11orf72 Missense_Mutation p.R35S 0.36 benign(0.402) TCGA-MV-A51V-01 11 68838868 68838868 C G TPCN2 Missense_Mutation p.Q314E 0.16 tolerated(0.09) benign(0.314) TCGA-MV-A51V-01 11 7064452 7064452 C T NLRP14 Silent p.L399L 0.07 TCGA-MV-A51V-01 11 74546756 74546756 G C RNF169 Missense_Mutation p.E370Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 11 74546921 74546921 G C RNF169 Missense_Mutation p.E425Q 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-MV-A51V-01 11 7650752 7650752 G C PPFIBP2 Silent p.V317V 0.12 TCGA-MV-A51V-01 11 76900465 76900465 C A MYO7A Missense_Mutation p.L1194I 0.08 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 11 77412866 77412866 C G RSF1 Missense_Mutation p.E470Q 0.10 tolerated_low_confidence(0.16) benign(0.039) TCGA-MV-A51V-01 11 8158940 8158940 C G RIC3 Missense_Mutation p.G169A 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-MV-A51V-01 11 82643371 82643371 G A C11orf82 Missense_Mutation p.E331K 0.07 tolerated(0.07) benign(0.098) TCGA-MV-A51V-01 11 85406271 85406271 G T SYTL2 Silent p.L1262L 0.12 TCGA-MV-A51V-01 11 85779764 85779764 G C PICALM Missense_Mutation p.S20C 0.09 deleterious(0) possibly_damaging(0.741) TCGA-MV-A51V-01 11 92534055 92534055 G C FAT3 Missense_Mutation p.D2626H 0.29 probably_damaging(1) TCGA-MV-A51V-01 11 93530834 93530834 G T MED17 Missense_Mutation p.G426V 0.12 tolerated(0.17) benign(0.159) TCGA-MV-A51V-01 11 9522638 9522638 G C ZNF143 Missense_Mutation p.G323A 0.08 deleterious(0.01) probably_damaging(1) TCGA-MV-A51V-01 11 9546884 9546884 G C ZNF143 Missense_Mutation p.R595T 0.20 deleterious_low_confidence(0.04) benign(0.345) TCGA-MV-A51V-01 11 9598751 9598751 G C WEE1 Missense_Mutation p.R361P 0.22 deleterious(0) probably_damaging(0.982) TCGA-MV-A51V-01 11 9598794 9598794 G T WEE1 Missense_Mutation p.Q375H 0.19 deleterious(0) probably_damaging(0.954) TCGA-MV-A51V-01 11 9805978 9805978 C G SBF2 Missense_Mutation p.E1747Q 0.20 deleterious(0) possibly_damaging(0.567) TCGA-MV-A51V-01 11 99941197 99941197 G A CNTN5 Missense_Mutation p.D402N 0.14 tolerated(0.24) probably_damaging(0.98) TCGA-MV-A51V-01 12 101442143 101442143 G C ANO4 Missense_Mutation p.A391P 0.27 deleterious(0.02) possibly_damaging(0.849) TCGA-MV-A51V-01 12 102122769 102122769 G A CHPT1 3'UTR 0.38 TCGA-MV-A51V-01 12 102147302 102147302 C G GNPTAB Silent p.L1150L 0.29 TCGA-MV-A51V-01 12 102155037 102155037 G A GNPTAB Silent p.L1001L 0.09 TCGA-MV-A51V-01 12 1025621 1025621 C T RAD52 Missense_Mutation p.E252K 0.33 tolerated(0.07) benign(0.01) TCGA-MV-A51V-01 12 10280034 10280034 G C CLEC7A Intron 0.09 TCGA-MV-A51V-01 12 104390542 104390542 G C GLT8D2 Missense_Mutation p.Q191E 0.07 tolerated(0.1) benign(0.257) TCGA-MV-A51V-01 12 105151254 105151254 C G CHST11 Silent p.L244L 0.20 TCGA-MV-A51V-01 12 105568044 105568044 G C APPL2 3'UTR 0.46 TCGA-MV-A51V-01 12 106804621 106804621 C G POLR3B Missense_Mutation p.F328L 0.14 tolerated(0.1) benign(0.107) TCGA-MV-A51V-01 12 107237644 107237644 A G RIC8B Silent p.R360R 0.09 TCGA-MV-A51V-01 12 109210864 109210864 C G SSH1 Missense_Mutation p.Q117H 0.17 deleterious(0) possibly_damaging(0.827) TCGA-MV-A51V-01 12 109520488 109520488 G C USP30 Missense_Mutation p.L296F 0.11 tolerated_low_confidence(0.1) benign(0.367) TCGA-MV-A51V-01 12 109604795 109604795 G A ACACB Silent p.E261E 0.09 TCGA-MV-A51V-01 12 109898553 109898553 C T KCTD10 Missense_Mutation p.R92Q 0.38 deleterious(0) probably_damaging(0.975) TCGA-MV-A51V-01 12 110006615 110006615 C G MMAB Missense_Mutation p.E84Q 0.17 tolerated(0.11) benign(0.255) TCGA-MV-A51V-01 12 110344431 110344431 G C TCHP Missense_Mutation p.E171Q 0.11 tolerated(0.32) possibly_damaging(0.464) TCGA-MV-A51V-01 12 110346727 110346727 G T TCHP Missense_Mutation p.Q288H 0.16 deleterious(0) probably_damaging(0.981) TCGA-MV-A51V-01 12 11061115 11061115 C G TAS2R13 Silent p.V261V 0.23 TCGA-MV-A51V-01 12 110719698 110719698 G C ATP2A2 Missense_Mutation p.R35T 0.16 tolerated(0.1) benign(0.007) TCGA-MV-A51V-01 12 110832930 110832930 G C ANAPC7 Missense_Mutation p.I162M 0.26 deleterious(0) possibly_damaging(0.887) TCGA-MV-A51V-01 12 11183771 11183771 C T TAS2R31 Missense_Mutation p.R55K 0.08 deleterious(0) possibly_damaging(0.818) TCGA-MV-A51V-01 12 112586054 112586054 C G TRAFD1 Missense_Mutation p.I368M 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-MV-A51V-01 12 112623205 112623205 C T HECTD4 Missense_Mutation p.E3043K 0.11 benign(0.364) TCGA-MV-A51V-01 12 113334656 113334656 G C RPH3A 3'UTR 0.27 TCGA-MV-A51V-01 12 116425022 116425022 C G MED13L Missense_Mutation p.D1336H 0.10 deleterious(0) unknown(0) TCGA-MV-A51V-01 12 118590035 118590035 C G TAOK3 Missense_Mutation p.Q844H 0.08 deleterious(0.02) benign(0.019) TCGA-MV-A51V-01 12 118637039 118637039 C T TAOK3 Silent p.L337L 0.19 TCGA-MV-A51V-01 12 121746222 121746222 G A ANAPC5 3'UTR 0.16 TCGA-MV-A51V-01 12 121768444 121768444 G A ANAPC5 Missense_Mutation p.S355F 0.10 tolerated(0.15) benign(0.001) TCGA-MV-A51V-01 12 122326780 122326780 G T PSMD9 Silent p.A6A 0.29 TCGA-MV-A51V-01 12 122359491 122359491 G C WDR66 Missense_Mutation p.E94Q 0.40 deleterious_low_confidence(0.02) benign(0.014) TCGA-MV-A51V-01 12 122396386 122396386 G C WDR66 Missense_Mutation p.E647Q 0.28 tolerated(0.1) benign(0.103) TCGA-MV-A51V-01 12 122396425 122396425 G T WDR66 Nonsense_Mutation p.E660* 0.30 TCGA-MV-A51V-01 12 122658744 122658744 C T IL31 5'UTR 0.15 TCGA-MV-A51V-01 12 122710533 122710533 C T DIABLO Missense_Mutation p.R10H 0.29 deleterious(0.01) probably_damaging(0.932) TCGA-MV-A51V-01 12 122845599 122845599 G A CLIP1 Silent p.S304S 0.10 TCGA-MV-A51V-01 12 122985352 122985352 G C ZCCHC8 Silent p.L12L 0.50 TCGA-MV-A51V-01 12 12302025 12302025 G A LRP6 Silent p.L1019L 0.07 TCGA-MV-A51V-01 12 123355551 123355551 C G VPS37B Missense_Mutation p.E57Q 0.13 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 12 123706280 123706280 C T MPHOSPH9 Missense_Mutation p.E19K 0.12 tolerated(1) benign(0.003) TCGA-MV-A51V-01 12 12588651 12588651 G C LOH12CR1 Missense_Mutation p.D98H 0.32 tolerated(0.31) benign(0.093) TCGA-MV-A51V-01 12 12630882 12630882 C T DUSP16 Missense_Mutation p.E295K 0.09 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 12 12976944 12976944 G C DDX47 Missense_Mutation p.M297I 0.16 deleterious(0.01) possibly_damaging(0.833) TCGA-MV-A51V-01 12 130927096 130927096 G A RIMBP2 Silent p.N250N 0.18 TCGA-MV-A51V-01 12 132334580 132334580 G C MMP17 Missense_Mutation p.D480H 0.17 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 12 132497607 132497607 C T EP400 Silent p.F1165F 0.13 TCGA-MV-A51V-01 12 13716011 13716011 G A GRIN2B Silent p.F1387F 0.10 TCGA-MV-A51V-01 12 13828708 13828708 G A GRIN2B Missense_Mutation p.L366F 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-MV-A51V-01 12 18876381 18876381 G A PLCZ1 Silent p.F77F 0.23 TCGA-MV-A51V-01 12 1889746 1889746 C T ADIPOR2 Missense_Mutation p.S198L 0.12 deleterious(0.02) probably_damaging(1) TCGA-MV-A51V-01 12 24736964 24736964 G C LINC00477 RNA 0.29 TCGA-MV-A51V-01 12 26639248 26639248 A G ITPR2 Missense_Mutation p.L1867S 0.17 deleterious(0.02) benign(0.027) TCGA-MV-A51V-01 12 32137790 32137790 G A KIAA1551 Missense_Mutation p.E1301K 0.22 tolerated(0.11) probably_damaging(0.998) TCGA-MV-A51V-01 12 39047754 39047754 C G CPNE8 Missense_Mutation p.R542P 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-MV-A51V-01 12 40012807 40012807 G A ABCD2 Missense_Mutation p.A204V 0.44 tolerated(0.16) benign(0.035) TCGA-MV-A51V-01 12 40643638 40643638 C T LRRK2 Silent p.F283F 0.20 TCGA-MV-A51V-01 12 40651047 40651047 C T LRRK2 Intron 0.47 TCGA-MV-A51V-01 12 43944996 43944996 G A ADAMTS20 Nonsense_Mutation p.Q57* 0.12 TCGA-MV-A51V-01 12 4479728 4479728 C A FGF23 Silent p.R179R 0.10 TCGA-MV-A51V-01 12 48142645 48142645 G C RAPGEF3 Missense_Mutation p.Q371E 0.06 tolerated(0.69) benign(0.015) TCGA-MV-A51V-01 12 49446779 49446779 G C KMT2D Missense_Mutation p.S344C 0.06 unknown(0) TCGA-MV-A51V-01 12 49888630 49888630 C A SPATS2 Nonsense_Mutation p.S124* 0.18 TCGA-MV-A51V-01 12 50386153 50386153 G C RACGAP1 Missense_Mutation p.Q485E 0.21 tolerated(0.31) benign(0.01) TCGA-MV-A51V-01 12 50473809 50473809 G T ASIC1 Missense_Mutation p.K392N 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-MV-A51V-01 12 50571847 50571847 C A LIMA1 Missense_Mutation p.G428V 0.08 tolerated(0.06) possibly_damaging(0.552) TCGA-MV-A51V-01 12 50829325 50829325 C A LARP4 Missense_Mutation p.F151L 0.17 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 12 51281091 51281091 G C TMPRSS12 Missense_Mutation p.R281T 0.16 deleterious(0.03) possibly_damaging(0.507) TCGA-MV-A51V-01 12 52761071 52761071 C T KRT85 Missense_Mutation p.R40Q 0.12 deleterious(0.05) probably_damaging(0.978) TCGA-MV-A51V-01 12 52884916 52884916 C A KRT6A Nonsense_Mutation p.E266* 0.11 TCGA-MV-A51V-01 12 52884922 52884922 C T KRT6A Missense_Mutation p.E264K 0.10 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 12 53185159 53185159 C A KRT3 Missense_Mutation p.A456S 0.07 deleterious(0.01) probably_damaging(0.93) TCGA-MV-A51V-01 12 53185160 53185160 C A KRT3 Missense_Mutation p.M455I 0.07 deleterious(0.03) benign(0.356) TCGA-MV-A51V-01 12 53298455 53298455 G T KRT8 Missense_Mutation p.S132Y 0.28 deleterious(0) possibly_damaging(0.899) TCGA-MV-A51V-01 12 53696897 53696897 C G C12orf10 Missense_Mutation p.L137V 0.08 tolerated(0.52) benign(0.036) TCGA-MV-A51V-01 12 53702751 53702751 C A AAAS Missense_Mutation p.R330L 0.05 deleterious(0.02) possibly_damaging(0.885) TCGA-MV-A51V-01 12 53777147 53777147 C T SP1 Silent p.L472L 0.07 TCGA-MV-A51V-01 12 53878082 53878082 C T MAP3K12 Missense_Mutation p.D403N 0.14 deleterious(0.01) possibly_damaging(0.743) TCGA-MV-A51V-01 12 55945044 55945044 C G OR6C4 Missense_Mutation p.L12V 0.13 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-MV-A51V-01 12 56113062 56113062 C G BLOC1S1 Intron 0.19 TCGA-MV-A51V-01 12 56194392 56194392 C T SARNP Missense_Mutation p.E69K 0.11 tolerated(0.35) benign(0.115) TCGA-MV-A51V-01 12 56355414 56355414 C T PMEL Missense_Mutation p.C60Y 0.06 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 12 56486813 56486813 C A ERBB3 Missense_Mutation p.F409L 0.12 tolerated(1) benign(0.014) TCGA-MV-A51V-01 12 56510486 56510486 C G RPL41 5'UTR 0.40 TCGA-MV-A51V-01 12 57559689 57559689 G C LRP1 Missense_Mutation p.D878H 0.10 probably_damaging(0.939) TCGA-MV-A51V-01 12 58139982 58139982 C G TSPAN31 Silent p.V85V 0.08 TCGA-MV-A51V-01 12 58152659 58152659 C T MARCH9 Silent p.V340V 0.13 TCGA-MV-A51V-01 12 5853336 5853336 G A ANO2 Silent p.F442F 0.30 TCGA-MV-A51V-01 12 63976231 63976231 C G DPY19L2 Missense_Mutation p.L560F 0.14 tolerated(0.18) possibly_damaging(0.477) TCGA-MV-A51V-01 12 6421514 6421514 G A PLEKHG6 Missense_Mutation p.R41Q 0.33 tolerated_low_confidence(0.11) benign(0.025) TCGA-MV-A51V-01 12 6436998 6436998 G T PLEKHG6 Missense_Mutation p.R750M 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MV-A51V-01 12 6437003 6437003 G A PLEKHG6 Missense_Mutation p.E752K 0.26 deleterious_low_confidence(0) benign(0.014) TCGA-MV-A51V-01 12 6458355 6458355 G A SCNN1A Missense_Mutation p.S550L 0.07 deleterious(0) possibly_damaging(0.897) TCGA-MV-A51V-01 12 6602077 6602077 C T MRPL51 Nonsense_Mutation p.W47* 0.11 TCGA-MV-A51V-01 12 6619637 6619637 C G NCAPD2 Intron 0.21 TCGA-MV-A51V-01 12 6765959 6765959 C G ING4 Missense_Mutation p.E15Q 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-MV-A51V-01 12 68052168 68052168 G C DYRK2 Missense_Mutation p.R494T 0.07 deleterious(0.02) possibly_damaging(0.78) TCGA-MV-A51V-01 12 6953045 6953045 C T GNB3 Missense_Mutation p.S201L 0.18 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 12 70209267 70209267 A G RAB3IP 3'UTR 0.11 TCGA-MV-A51V-01 12 70965786 70965786 C G PTPRB Missense_Mutation p.G975A 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-MV-A51V-01 12 7526064 7526064 G A CD163L1 Silent p.L1194L 0.26 TCGA-MV-A51V-01 12 75874754 75874754 G A GLIPR1 Missense_Mutation p.D32N 0.30 tolerated(0.07) benign(0.003) TCGA-MV-A51V-01 12 75905329 75905329 C A KRR1 Nonsense_Mutation p.E17* 0.08 TCGA-MV-A51V-01 12 81528618 81528618 G C ACSS3 Missense_Mutation p.L160F 0.10 deleterious(0.02) benign(0.129) TCGA-MV-A51V-01 12 8276551 8276551 C T CLEC4A Missense_Mutation p.S26F 0.18 tolerated(0.09) benign(0.008) TCGA-MV-A51V-01 12 85492706 85492706 C G LRRIQ1 Nonsense_Mutation p.S1048* 0.10 TCGA-MV-A51V-01 12 85554472 85554472 G C LRRIQ1 Missense_Mutation p.R1601T 0.15 tolerated(0.4) benign(0.11) TCGA-MV-A51V-01 12 8630153 8630153 C G CLEC6A 3'UTR 0.56 TCGA-MV-A51V-01 12 9265066 9265066 C G A2M Missense_Mutation p.E113Q 0.17 tolerated(0.6) benign(0.011) TCGA-MV-A51V-01 12 9309864 9309864 T C PZP Missense_Mutation p.K1153E 0.14 deleterious(0.02) benign(0.396) TCGA-MV-A51V-01 12 93805045 93805045 G A UBE2N Missense_Mutation p.P21S 0.10 tolerated(0.08) benign(0.08) TCGA-MV-A51V-01 12 95535261 95535261 C G FGD6 Missense_Mutation p.E914Q 0.17 deleterious(0.01) possibly_damaging(0.897) TCGA-MV-A51V-01 12 970232 970232 C G WNK1 Missense_Mutation p.I558M 0.12 deleterious(0) unknown(0) TCGA-MV-A51V-01 13 101726966 101726966 C G NALCN Missense_Mutation p.K1334N 0.10 deleterious(0) probably_damaging(0.988) TCGA-MV-A51V-01 13 103459693 103459693 G A BIVM Missense_Mutation p.E26K 0.40 tolerated_low_confidence(0.06) benign(0.049) TCGA-MV-A51V-01 13 103459698 103459698 G A BIVM Silent p.E27E 0.39 TCGA-MV-A51V-01 13 111164459 111164459 C T COL4A2 Missense_Mutation p.S1687L 0.08 unknown(0) TCGA-MV-A51V-01 13 111287895 111287895 C A CARKD Silent p.V244V 0.16 TCGA-MV-A51V-01 13 111319756 111319756 C A CARS2 Nonsense_Mutation p.E284* 0.19 TCGA-MV-A51V-01 13 113771882 113771882 G C F7 Missense_Mutation p.K259N 0.30 tolerated(0.06) benign(0.007) TCGA-MV-A51V-01 13 113801733 113801733 G T F10 Missense_Mutation p.G263V 0.21 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 13 113899466 113899467 - GT CUL4A Frame_Shift_Ins p.G484Afs*39 0.17 TCGA-MV-A51V-01 13 114175017 114175017 C G TMCO3 Missense_Mutation p.L438V 0.12 deleterious(0.03) possibly_damaging(0.755) TCGA-MV-A51V-01 13 20277422 20277422 G A PSPC1 Nonsense_Mutation p.Q489* 0.08 TCGA-MV-A51V-01 13 21237729 21237729 G C IFT88 Missense_Mutation p.E730Q 0.27 tolerated(0.2) possibly_damaging(0.625) TCGA-MV-A51V-01 13 21381666 21381666 G A XPO4 Nonsense_Mutation p.Q583* 0.18 TCGA-MV-A51V-01 13 21383307 21383307 C T XPO4 Missense_Mutation p.D470N 0.28 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 13 25281494 25281494 C G ATP12A Missense_Mutation p.L812V 0.05 deleterious(0.04) possibly_damaging(0.597) TCGA-MV-A51V-01 13 25671680 25671680 C T PABPC3 Silent p.I448I 0.05 TCGA-MV-A51V-01 13 26793693 26793693 C G RNF6 Missense_Mutation p.E32Q 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-MV-A51V-01 13 28143379 28143379 C G LNX2 Missense_Mutation p.E148Q 0.14 tolerated(0.16) benign(0.42) TCGA-MV-A51V-01 13 29599343 29599343 G A MTUS2 Missense_Mutation p.E180K 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-MV-A51V-01 13 29600054 29600054 G C MTUS2 Missense_Mutation p.D417H 0.37 deleterious(0.02) possibly_damaging(0.54) TCGA-MV-A51V-01 13 31531143 31531143 G C TEX26 Missense_Mutation p.R149T 0.14 tolerated(0.09) possibly_damaging(0.49) TCGA-MV-A51V-01 13 32913044 32913044 G C BRCA2 Missense_Mutation p.E1518Q 0.47 tolerated(0.11) benign(0.249) TCGA-MV-A51V-01 13 33859766 33859766 G C STARD13 Missense_Mutation p.Q4E 0.07 tolerated_low_confidence(0.35) benign(0.003) TCGA-MV-A51V-01 13 36241593 36241593 G C NBEA Missense_Mutation p.L2828F 0.13 deleterious(0.01) possibly_damaging(0.822) TCGA-MV-A51V-01 13 41766572 41766572 C G KBTBD7 Missense_Mutation p.D608H 0.17 deleterious(0.04) possibly_damaging(0.815) TCGA-MV-A51V-01 13 41834874 41834874 C A MTRF1 Missense_Mutation p.W57L 0.21 tolerated(0.22) benign(0.02) TCGA-MV-A51V-01 13 45563201 45563201 G C NUFIP1 Missense_Mutation p.S124C 0.19 deleterious(0.03) benign(0.001) TCGA-MV-A51V-01 13 48830439 48830439 G C ITM2B Missense_Mutation p.E125Q 0.17 tolerated(0.06) benign(0.113) TCGA-MV-A51V-01 13 49033862 49033862 G T RB1 Nonsense_Mutation p.E667* 0.72 TCGA-MV-A51V-01 13 50141409 50141409 C A RCBTB1 Missense_Mutation p.D3Y 0.09 deleterious(0) probably_damaging(0.967) TCGA-MV-A51V-01 13 50590231 50590231 C G TRIM13 3'Flank 0.44 TCGA-MV-A51V-01 13 52952563 52952563 C G THSD1 Missense_Mutation p.E514D 0.32 tolerated(0.23) benign(0.012) TCGA-MV-A51V-01 13 52972180 52972180 G C THSD1 Missense_Mutation p.Q70E 0.36 tolerated(0.2) benign(0.023) TCGA-MV-A51V-01 13 58298895 58298895 G T PCDH17 Nonsense_Mutation p.E983* 0.24 TCGA-MV-A51V-01 13 76409426 76409426 C G LMO7 Missense_Mutation p.S862C 0.16 deleterious(0.01) possibly_damaging(0.77) TCGA-MV-A51V-01 13 77765949 77765949 C G MYCBP2 Splice_Site p.X1274_splice 0.28 TCGA-MV-A51V-01 13 77780798 77780798 C T MYCBP2 Silent p.L1155L 0.22 TCGA-MV-A51V-01 13 92002995 92002995 G C MIR17HG RNA 0.30 TCGA-MV-A51V-01 13 96505890 96505890 G C UGGT2 Silent p.L1397L 0.13 TCGA-MV-A51V-01 13 96508535 96508535 C T UGGT2 Silent p.R1295R 0.26 TCGA-MV-A51V-01 13 99515669 99515669 C G DOCK9 Missense_Mutation p.K1140N 0.14 deleterious(0) possibly_damaging(0.857) TCGA-MV-A51V-01 14 100118982 100118982 C G HHIPL1 Missense_Mutation p.S226W 0.25 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 14 102551248 102551248 C A HSP90AA1 Nonsense_Mutation p.E373* 0.37 TCGA-MV-A51V-01 14 102675792 102675792 C A WDR20 Missense_Mutation p.L460M 0.07 tolerated(0.07) benign(0.15) TCGA-MV-A51V-01 14 102906783 102906783 C G TECPR2 Silent p.L863L 0.67 TCGA-MV-A51V-01 14 103804221 103804221 G A EIF5 Intron 0.20 TCGA-MV-A51V-01 14 103804685 103804685 G C EIF5 Missense_Mutation p.G154A 0.17 tolerated(0.12) benign(0) TCGA-MV-A51V-01 14 104465028 104465028 G C TDRD9 Missense_Mutation p.L482F 0.12 deleterious(0) probably_damaging(0.993) TCGA-MV-A51V-01 14 105517397 105517397 G C GPR132 Missense_Mutation p.F359L 0.28 tolerated_low_confidence(0.24) benign(0.004) TCGA-MV-A51V-01 14 106054155 106054155 C G IGHA2 Missense_Mutation p.E122Q 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-MV-A51V-01 14 21270057 21270057 C T RNASE1 Missense_Mutation p.M57I 0.09 deleterious(0.01) possibly_damaging(0.609) TCGA-MV-A51V-01 14 21499234 21499234 G A TPPP2 Silent p.Q79Q 0.17 TCGA-MV-A51V-01 14 23014019 23014019 G C TRAJ1 Missense_Mutation p.G14A 0.17 unknown(0) TCGA-MV-A51V-01 14 24113723 24113723 G A DHRS2 Missense_Mutation p.G216R 0.10 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 14 24113724 24113724 G A DHRS2 Missense_Mutation p.G216E 0.10 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 14 24648858 24648858 C T REC8 Silent p.L458L 0.08 TCGA-MV-A51V-01 14 31364614 31364614 G A STRN3 3'UTR 0.22 TCGA-MV-A51V-01 14 33293680 33293680 A T AKAP6 Nonsense_Mutation p.R2221* 0.18 TCGA-MV-A51V-01 14 33293681 33293681 G A AKAP6 Missense_Mutation p.R2221K 0.18 tolerated_low_confidence(0.68) benign(0) TCGA-MV-A51V-01 14 35182575 35182575 C T CFL2 Missense_Mutation p.D66N 0.11 tolerated(0.11) benign(0.205) TCGA-MV-A51V-01 14 35522537 35522537 G C FAM177A1 Missense_Mutation p.K73N 0.07 deleterious(0.04) probably_damaging(0.997) TCGA-MV-A51V-01 14 45693644 45693644 C T MIS18BP1 Missense_Mutation p.E716K 0.18 tolerated(0.08) possibly_damaging(0.572) TCGA-MV-A51V-01 14 45693852 45693852 C G MIS18BP1 Missense_Mutation p.K646N 0.11 deleterious(0) benign(0.346) TCGA-MV-A51V-01 14 50779753 50779753 C G ATP5S Silent p.V5V 0.20 TCGA-MV-A51V-01 14 53175094 53175094 G C PSMC6 Missense_Mutation p.Q65H 0.09 deleterious(0) probably_damaging(0.919) TCGA-MV-A51V-01 14 55004835 55004835 G A CGRRF1 Missense_Mutation p.E245K 0.14 tolerated(0.82) benign(0.001) TCGA-MV-A51V-01 14 55243187 55243187 G T SAMD4A Missense_Mutation p.S658I 0.13 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 14 55612080 55612080 C G LGALS3 3'UTR 0.33 TCGA-MV-A51V-01 14 56104065 56104065 C G KTN1 Missense_Mutation p.L567V 0.14 tolerated(0.11) benign(0.121) TCGA-MV-A51V-01 14 57700549 57700549 C G EXOC5 Missense_Mutation p.R256T 0.36 tolerated(0.13) benign(0.016) TCGA-MV-A51V-01 14 57747015 57747015 C G AP5M1 Missense_Mutation p.L275V 0.07 tolerated(0.54) benign(0.085) TCGA-MV-A51V-01 14 57948369 57948369 C G C14orf105 Missense_Mutation p.E135Q 0.14 deleterious(0) possibly_damaging(0.804) TCGA-MV-A51V-01 14 58563691 58563691 C G C14orf37 Missense_Mutation p.E614Q 0.50 deleterious(0.04) benign(0.014) TCGA-MV-A51V-01 14 60616835 60616835 C G DHRS7 Missense_Mutation p.G235A 0.14 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 14 61789002 61789002 G T PRKCH Missense_Mutation p.Q61H 0.28 tolerated(0.09) benign(0.018) TCGA-MV-A51V-01 14 61789027 61789027 G C PRKCH Missense_Mutation p.E70Q 0.32 deleterious(0.05) probably_damaging(0.95) TCGA-MV-A51V-01 14 62205046 62205046 G C HIF1A Missense_Mutation p.Q521H 0.37 tolerated(0.12) benign(0.013) TCGA-MV-A51V-01 14 64473810 64473810 G A SYNE2 Missense_Mutation p.E1483K 0.17 probably_damaging(0.999) TCGA-MV-A51V-01 14 64473812 64473812 G A SYNE2 Silent p.E1483E 0.16 TCGA-MV-A51V-01 14 64612900 64612900 G A SYNE2 Missense_Mutation p.E5200K 0.20 possibly_damaging(0.477) TCGA-MV-A51V-01 14 64678779 64678779 C G SYNE2 Nonsense_Mutation p.S6275* 0.12 TCGA-MV-A51V-01 14 64989555 64989555 G C ZBTB1 Missense_Mutation p.E445Q 0.14 tolerated(0.23) probably_damaging(0.986) TCGA-MV-A51V-01 14 64989750 64989750 G C ZBTB1 Missense_Mutation p.D510H 0.20 deleterious(0.01) possibly_damaging(0.879) TCGA-MV-A51V-01 14 65233355 65233355 C T SPTB Intron 0.32 TCGA-MV-A51V-01 14 68042625 68042625 G C PLEKHH1 Missense_Mutation p.G752A 0.12 tolerated(0.19) benign(0.002) TCGA-MV-A51V-01 14 68123264 68123264 C G VTI1B Missense_Mutation p.E137Q 0.07 tolerated(0.21) benign(0.042) TCGA-MV-A51V-01 14 68217813 68217813 C G ZFYVE26 Missense_Mutation p.E2458Q 0.10 deleterious(0) probably_damaging(0.975) TCGA-MV-A51V-01 14 69358955 69358955 C G ACTN1 Missense_Mutation p.V301L 0.11 tolerated(0.2) benign(0.002) TCGA-MV-A51V-01 14 69920001 69920001 G A SLC39A9 Silent p.T149T 0.63 TCGA-MV-A51V-01 14 71059650 71059650 C T MED6 Missense_Mutation p.R138Q 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-MV-A51V-01 14 74567900 74567900 G A LIN52 Missense_Mutation p.R85Q 0.14 deleterious(0.01) benign(0.113) TCGA-MV-A51V-01 14 74970001 74970001 G A LTBP2 Silent p.R1603R 0.18 TCGA-MV-A51V-01 14 75182720 75182720 C T FCF1 Silent p.L70L 0.19 TCGA-MV-A51V-01 14 75520053 75520053 G A ACYP1 3'UTR 0.39 TCGA-MV-A51V-01 14 76349075 76349075 G T TTLL5 Missense_Mutation p.M1190I 0.13 tolerated_low_confidence(0.19) benign(0) TCGA-MV-A51V-01 14 76425590 76425590 C T TGFB3 Silent p.G393G 0.17 TCGA-MV-A51V-01 14 88862531 88862531 G T SPATA7 Silent p.V74V 0.37 TCGA-MV-A51V-01 14 90429872 90429872 C G TDP1 Silent p.L138L 0.14 TCGA-MV-A51V-01 14 91747825 91747825 C T CCDC88C Missense_Mutation p.E1559K 0.13 tolerated(0.18) benign(0.297) TCGA-MV-A51V-01 14 92268667 92268667 G A TC2N Nonsense_Mutation p.Q134* 0.10 TCGA-MV-A51V-01 14 94909104 94909104 C T SERPINA11 Missense_Mutation p.E370K 0.21 tolerated(0.2) benign(0.008) TCGA-MV-A51V-01 14 95058573 95058573 C G SERPINA5 Silent p.P406P 0.19 TCGA-MV-A51V-01 14 96792165 96792165 G C ATG2B Missense_Mutation p.S753C 0.10 tolerated(0.18) benign(0) TCGA-MV-A51V-01 14 99876440 99876440 G C SETD3 Intron 0.29 TCGA-MV-A51V-01 15 100215614 100215614 G C MEF2A Missense_Mutation p.L209F 0.09 deleterious(0.04) probably_damaging(0.986) TCGA-MV-A51V-01 15 25455102 25455102 G C SNORD115-22 RNA 0.08 TCGA-MV-A51V-01 15 27184432 27184432 C T GABRA5 Intron 0.11 TCGA-MV-A51V-01 15 28419570 28419570 G A HERC2 Missense_Mutation p.A3343V 0.17 benign(0.093) TCGA-MV-A51V-01 15 29346318 29346318 G C APBA2 Silent p.V77V 0.06 TCGA-MV-A51V-01 15 29561595 29561595 C T NDNL2 Silent p.P105P 0.34 TCGA-MV-A51V-01 15 33023078 33023078 G T GREM1 Missense_Mutation p.G63W 0.20 deleterious(0.01) possibly_damaging(0.825) TCGA-MV-A51V-01 15 33988595 33988595 G A RYR3 Missense_Mutation p.D2013N 0.15 probably_damaging(0.978) TCGA-MV-A51V-01 15 34537957 34537957 G A SLC12A6 Silent p.S587S 0.14 TCGA-MV-A51V-01 15 34537962 34537962 G A SLC12A6 Nonsense_Mutation p.Q586* 0.12 TCGA-MV-A51V-01 15 40494887 40494887 G C BUB1B Missense_Mutation p.D576H 0.13 deleterious(0.03) possibly_damaging(0.625) TCGA-MV-A51V-01 15 41023326 41023326 G A RAD51 Missense_Mutation p.E325K 0.11 deleterious(0) probably_damaging(0.989) TCGA-MV-A51V-01 15 41667978 41667978 G C NUSAP1 Missense_Mutation p.D359H 0.09 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 15 41859720 41859720 C G TYRO3 Missense_Mutation p.Q316E 0.07 tolerated(0.85) benign(0.066) TCGA-MV-A51V-01 15 42437961 42437961 C T PLA2G4F Intron 0.14 TCGA-MV-A51V-01 15 42438344 42438344 C G PLA2G4F Missense_Mutation p.L505F 0.15 deleterious(0.05) benign(0.003) TCGA-MV-A51V-01 15 42439847 42439847 C G PLA2G4F Silent p.L391L 0.10 TCGA-MV-A51V-01 15 42439856 42439856 C T PLA2G4F Silent p.V388V 0.11 TCGA-MV-A51V-01 15 42439920 42439920 C T PLA2G4F Missense_Mutation p.R367Q 0.13 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 15 42442033 42442033 C G PLA2G4F Missense_Mutation p.D313H 0.21 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 15 43330394 43330394 G C UBR1 Nonsense_Mutation p.S629* 0.30 TCGA-MV-A51V-01 15 43783911 43783911 G C TP53BP1 Missense_Mutation p.I109M 0.15 tolerated(0.23) benign(0.037) TCGA-MV-A51V-01 15 44876216 44876216 C T SPG11 Missense_Mutation p.D1888N 0.13 deleterious(0.05) benign(0.186) TCGA-MV-A51V-01 15 45709498 45709498 G C SPATA5L1 Missense_Mutation p.M623I 0.09 tolerated(0.16) benign(0.006) TCGA-MV-A51V-01 15 48779626 48779626 C G FBN1 Missense_Mutation p.E1116Q 0.08 probably_damaging(0.974) TCGA-MV-A51V-01 15 48784717 48784717 G A FBN1 Missense_Mutation p.S932L 0.23 probably_damaging(0.999) TCGA-MV-A51V-01 15 49033757 49033757 G C CEP152 Intron 0.09 TCGA-MV-A51V-01 15 49320804 49320804 C T SECISBP2L Missense_Mutation p.R247K 0.20 deleterious(0) probably_damaging(0.992) TCGA-MV-A51V-01 15 50853909 50853909 G A TRPM7 Missense_Mutation p.S1855L 0.11 tolerated_low_confidence(0.07) benign(0.001) TCGA-MV-A51V-01 15 50867260 50867260 G T TRPM7 Nonsense_Mutation p.S1603* 0.09 TCGA-MV-A51V-01 15 51634108 51634108 C T GLDN Missense_Mutation p.P76L 0.19 tolerated(0.39) benign(0.002) TCGA-MV-A51V-01 15 51693809 51693809 C G GLDN Missense_Mutation p.F349L 0.09 deleterious(0.03) benign(0.217) TCGA-MV-A51V-01 15 51742421 51742421 G T DMXL2 Missense_Mutation p.H2937N 0.17 tolerated(0.06) benign(0.061) TCGA-MV-A51V-01 15 52561971 52561971 G C MYO5C Missense_Mutation p.Q307E 0.10 deleterious(0.01) benign(0.305) TCGA-MV-A51V-01 15 52638558 52638558 C A MYO5A Missense_Mutation p.R1320I 0.27 tolerated(0.08) benign(0.016) TCGA-MV-A51V-01 15 53907946 53907946 G C WDR72 Silent p.L819L 0.22 TCGA-MV-A51V-01 15 57484374 57484374 G C TCF12 Missense_Mutation p.D137H 0.11 deleterious(0) probably_damaging(0.924) TCGA-MV-A51V-01 15 59063836 59063836 C G FAM63B Missense_Mutation p.S81C 0.30 tolerated_low_confidence(0.16) benign(0.003) TCGA-MV-A51V-01 15 59146864 59146864 G T FAM63B 3'UTR 0.24 TCGA-MV-A51V-01 15 59146883 59146883 G A FAM63B 3'UTR 0.27 TCGA-MV-A51V-01 15 59186676 59186676 G C SLTM Missense_Mutation p.L445V 0.25 deleterious(0) unknown(0) TCGA-MV-A51V-01 15 62226531 62226531 C G VPS13C Splice_Site p.X1919_splice 0.12 TCGA-MV-A51V-01 15 62359855 62359855 C T C2CD4A Missense_Mutation p.R15W 0.11 tolerated(0.18) possibly_damaging(0.827) TCGA-MV-A51V-01 15 63363288 63363288 G C TPM1 Splice_Site p.X258_splice 0.11 TCGA-MV-A51V-01 15 65266966 65266966 G C SPG21 Missense_Mutation p.I142M 0.25 tolerated(0.07) possibly_damaging(0.827) TCGA-MV-A51V-01 15 65954275 65954275 G C DENND4A Missense_Mutation p.Q1879E 0.18 tolerated(1) benign(0.075) TCGA-MV-A51V-01 15 69003926 69003926 G T CORO2B Missense_Mutation p.D177Y 0.28 deleterious(0.01) benign(0.178) TCGA-MV-A51V-01 15 69746006 69746006 C G RPLP1 Silent p.L31L 0.09 TCGA-MV-A51V-01 15 72500975 72500975 C A PKM Nonsense_Mutation p.E275* 0.13 TCGA-MV-A51V-01 15 74326805 74326805 C T PML Intron 0.27 TCGA-MV-A51V-01 15 75221517 75221517 C G COX5A Missense_Mutation p.D53H 0.30 deleterious(0.03) possibly_damaging(0.702) TCGA-MV-A51V-01 15 75941771 75941771 G C SNX33 Missense_Mutation p.E110Q 0.13 tolerated(0.41) probably_damaging(0.986) TCGA-MV-A51V-01 15 76496214 76496214 C G C15orf27 Missense_Mutation p.T385S 0.16 tolerated_low_confidence(0.84) benign(0.023) TCGA-MV-A51V-01 15 78316701 78316701 G A TBC1D2B Nonsense_Mutation p.Q423* 0.13 TCGA-MV-A51V-01 15 83677386 83677386 G C C15orf40 Missense_Mutation p.P94A 0.31 tolerated(0.14) probably_damaging(1) TCGA-MV-A51V-01 15 83926593 83926593 C T BNC1 Silent p.S862S 0.10 TCGA-MV-A51V-01 15 84592674 84592674 C T ADAMTSL3 Missense_Mutation p.A669V 0.28 tolerated(1) benign(0.126) TCGA-MV-A51V-01 15 90020415 90020415 G C RHCG Missense_Mutation p.Q379E 0.53 tolerated(1) benign(0.002) TCGA-MV-A51V-01 15 90144983 90144983 C G TICRR Missense_Mutation p.I781M 0.23 tolerated(0.07) possibly_damaging(0.889) TCGA-MV-A51V-01 15 90380876 90380876 C G C15orf38-AP3S2 Missense_Mutation p.E343Q 0.21 tolerated_low_confidence(0.3) benign(0.096) TCGA-MV-A51V-01 15 91424771 91424771 G A FURIN Missense_Mutation p.R683Q 0.13 deleterious(0.01) benign(0.289) TCGA-MV-A51V-01 15 93595459 93595459 C G RGMA Missense_Mutation p.E145Q 0.08 tolerated(0.34) probably_damaging(0.966) TCGA-MV-A51V-01 15 94858814 94858814 C G MCTP2 Silent p.L195L 0.21 TCGA-MV-A51V-01 15 98984366 98984366 C G FAM169B Silent p.V131V 0.22 TCGA-MV-A51V-01 15 99500735 99500735 G C IGF1R 3'UTR 0.18 TCGA-MV-A51V-01 16 10788756 10788756 A G TEKT5 5'UTR 0.23 TCGA-MV-A51V-01 16 1399383 1399383 C T BAIAP3 3'UTR 0.21 TCGA-MV-A51V-01 16 1412645 1412645 G C GNPTG Missense_Mutation p.D215H 0.08 deleterious(0) possibly_damaging(0.764) TCGA-MV-A51V-01 16 14738417 14738417 G C BFAR Missense_Mutation p.E72Q 0.43 tolerated(0.08) probably_damaging(0.981) TCGA-MV-A51V-01 16 1536286 1536286 C T PTX4 Missense_Mutation p.C359Y 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-MV-A51V-01 16 15703562 15703562 C T KIAA0430 Missense_Mutation p.E1258K 0.17 deleterious(0.03) possibly_damaging(0.785) TCGA-MV-A51V-01 16 15931778 15931778 G C MYH11 Nonsense_Mutation p.S111* 0.08 TCGA-MV-A51V-01 16 15932089 15932089 G A MYH11 Silent p.L7L 0.17 TCGA-MV-A51V-01 16 17211525 17211525 C T XYLT1 Silent p.S845S 0.17 TCGA-MV-A51V-01 16 19127032 19127032 C A ITPRIPL2 Missense_Mutation p.R417S 0.14 tolerated(0.59) benign(0.051) TCGA-MV-A51V-01 16 2028584 2028584 C G TBL3 Silent p.L775L 0.12 TCGA-MV-A51V-01 16 20471578 20471578 A G ACSM2A Missense_Mutation p.S48G 0.29 tolerated(0.21) benign(0.087) TCGA-MV-A51V-01 16 20857641 20857641 C G AC004381.6 Missense_Mutation p.I741M 0.19 deleterious(0) possibly_damaging(0.903) TCGA-MV-A51V-01 16 20996932 20996932 C A DNAH3 Nonsense_Mutation p.E2378* 0.17 TCGA-MV-A51V-01 16 2153294 2153294 G T PKD1 Missense_Mutation p.L2922M 0.09 probably_damaging(0.954) TCGA-MV-A51V-01 16 23200787 23200787 G A SCNN1G Missense_Mutation p.R138Q 0.15 tolerated(0.23) probably_damaging(1) TCGA-MV-A51V-01 16 24358087 24358087 C G CACNG3 Missense_Mutation p.H82D 0.09 deleterious(0) probably_damaging(0.988) TCGA-MV-A51V-01 16 24971045 24971045 C G ARHGAP17 Missense_Mutation p.R224T 0.10 deleterious(0) probably_damaging(0.995) TCGA-MV-A51V-01 16 2505518 2505518 C G CCNF Missense_Mutation p.S613C 0.15 deleterious(0) probably_damaging(0.995) TCGA-MV-A51V-01 16 2570812 2570812 G C AMDHD2 Missense_Mutation p.E42D 0.22 deleterious(0.04) probably_damaging(0.93) TCGA-MV-A51V-01 16 28856664 28856664 C G TUFM Missense_Mutation p.D129H 0.10 deleterious(0) probably_damaging(0.96) TCGA-MV-A51V-01 16 29816162 29816162 G A KIF22 Missense_Mutation p.E569K 0.46 tolerated(0.45) benign(0.002) TCGA-MV-A51V-01 16 29819563 29819563 C G MAZ Silent p.L352L 0.22 TCGA-MV-A51V-01 16 30002515 30002515 G A TAOK2 3'Flank 0.08 TCGA-MV-A51V-01 16 30005349 30005349 C T HIRIP3 Missense_Mutation p.E373K 0.15 deleterious(0.03) possibly_damaging(0.492) TCGA-MV-A51V-01 16 30006059 30006059 G C HIRIP3 Nonsense_Mutation p.S136* 0.19 TCGA-MV-A51V-01 16 30124682 30124682 G A GDPD3 Missense_Mutation p.R40C 0.05 deleterious(0.03) benign(0.017) TCGA-MV-A51V-01 16 30410011 30410011 C T ZNF48 Silent p.L480L 0.11 TCGA-MV-A51V-01 16 30663280 30663280 C A PRR14 Missense_Mutation p.H63N 0.09 tolerated_low_confidence(0.25) benign(0.003) TCGA-MV-A51V-01 16 30721438 30721438 C A SRCAP Missense_Mutation p.Q375K 0.09 unknown(0) TCGA-MV-A51V-01 16 31094435 31094435 G A ZNF646 3'UTR 0.45 TCGA-MV-A51V-01 16 3188482 3188482 C T ZNF213 Missense_Mutation p.P155S 0.13 tolerated(0.18) benign(0.009) TCGA-MV-A51V-01 16 3604254 3604254 G A NLRC3 Silent p.L799L 0.18 TCGA-MV-A51V-01 16 3642827 3642827 G C SLX4 Missense_Mutation p.L734V 0.10 tolerated(0.06) benign(0.096) TCGA-MV-A51V-01 16 3658957 3658957 C G SLX4 Silent p.L3L 0.21 TCGA-MV-A51V-01 16 4513775 4513775 C G NMRAL1 Missense_Mutation p.K202N 0.45 tolerated(0.21) possibly_damaging(0.796) TCGA-MV-A51V-01 16 4797371 4797371 C G C16orf71 Silent p.L436L 0.15 TCGA-MV-A51V-01 16 48581966 48581966 C T N4BP1 Missense_Mutation p.R726K 0.15 tolerated(0.11) possibly_damaging(0.896) TCGA-MV-A51V-01 16 52473680 52473680 C G TOX3 Missense_Mutation p.Q396H 0.11 deleterious_low_confidence(0.03) probably_damaging(0.976) TCGA-MV-A51V-01 16 53721857 53721857 C G RPGRIP1L Missense_Mutation p.D184H 0.23 deleterious(0.01) benign(0.396) TCGA-MV-A51V-01 16 57731931 57731931 G A CCDC135 Missense_Mutation p.E24K 0.11 deleterious_low_confidence(0.04) unknown(0) TCGA-MV-A51V-01 16 57793717 57793717 G A KIFC3 Missense_Mutation p.S800L 0.14 tolerated(0.21) benign(0.002) TCGA-MV-A51V-01 16 67208573 67208573 G A NOL3 Missense_Mutation p.R112Q 0.18 tolerated(0.33) benign(0.009) TCGA-MV-A51V-01 16 67424427 67424427 G A TPPP3 Silent p.I99I 0.74 TCGA-MV-A51V-01 16 67692233 67692233 C T ACD Missense_Mutation p.E374K 0.23 tolerated(0.05) benign(0.031) TCGA-MV-A51V-01 16 72821415 72821415 G A ZFHX3 Missense_Mutation p.S3587L 0.06 unknown(0) TCGA-MV-A51V-01 16 72821857 72821857 C G ZFHX3 Missense_Mutation p.E3440Q 0.14 unknown(0) TCGA-MV-A51V-01 16 75146305 75146305 G C LDHD Silent p.L491L 0.39 TCGA-MV-A51V-01 16 75663388 75663388 C G KARS Missense_Mutation p.K520N 0.06 deleterious(0.03) possibly_damaging(0.46) TCGA-MV-A51V-01 16 82033499 82033499 G C SDR42E1 Missense_Mutation p.I133M 0.10 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 16 83999363 83999363 C G OSGIN1 Silent p.L395L 0.35 TCGA-MV-A51V-01 16 84270785 84270785 C T KCNG4 Missense_Mutation p.D103N 0.08 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 16 84600602 84600602 G C COTL1 Intron 0.42 TCGA-MV-A51V-01 16 8732964 8732964 C G METTL22 Silent p.L239L 0.11 TCGA-MV-A51V-01 16 87902623 87902623 C G SLC7A5 Missense_Mutation p.E136Q 0.17 tolerated(0.07) probably_damaging(0.988) TCGA-MV-A51V-01 16 89245823 89245823 G A CDH15 Splice_Site p.X15_splice 0.20 TCGA-MV-A51V-01 16 8992270 8992270 C G USP7 Missense_Mutation p.E889Q 0.09 deleterious(0.01) benign(0.383) TCGA-MV-A51V-01 16 89950993 89950993 C A TCF25 Missense_Mutation p.H120N 0.16 tolerated(0.74) benign(0) TCGA-MV-A51V-01 16 8999045 8999045 C T USP7 Silent p.L524L 0.08 TCGA-MV-A51V-01 16 9017104 9017104 G A USP7 Silent p.F117F 0.15 TCGA-MV-A51V-01 17 10403949 10403949 C G MYH1 Missense_Mutation p.E1287Q 0.11 tolerated(0.06) probably_damaging(1) TCGA-MV-A51V-01 17 10608795 10608795 G T ADPRM Missense_Mutation p.M184I 0.55 tolerated(0.12) benign(0.016) TCGA-MV-A51V-01 17 11659906 11659906 G C DNAH9 Missense_Mutation p.E2254Q 0.19 probably_damaging(0.998) TCGA-MV-A51V-01 17 12569538 12569538 G C MYOCD Silent p.L11L 0.24 TCGA-MV-A51V-01 17 1340222 1340222 C T CRK Missense_Mutation p.D157N 0.30 deleterious(0.03) probably_damaging(0.951) TCGA-MV-A51V-01 17 1340408 1340408 C G CRK Missense_Mutation p.D95H 0.11 deleterious(0.03) possibly_damaging(0.764) TCGA-MV-A51V-01 17 1387516 1387516 G T MYO1C Missense_Mutation p.L53M 0.15 deleterious(0.01) probably_damaging(1) TCGA-MV-A51V-01 17 1584858 1584858 C G PRPF8 Missense_Mutation p.L260F 0.10 tolerated(0.35) benign(0.002) TCGA-MV-A51V-01 17 15928356 15928356 C T TTC19 Silent p.L234L 0.09 TCGA-MV-A51V-01 17 15942854 15942854 C G NCOR1 Missense_Mutation p.G2283A 0.18 possibly_damaging(0.786) TCGA-MV-A51V-01 17 17150859 17150859 C G COPS3 Missense_Mutation p.E385Q 0.08 tolerated(0.46) benign(0.01) TCGA-MV-A51V-01 17 17409066 17409066 G T PEMT 3'UTR 0.52 TCGA-MV-A51V-01 17 17752140 17752140 C G TOM1L2 Missense_Mutation p.E458Q 0.15 deleterious(0.02) possibly_damaging(0.703) TCGA-MV-A51V-01 17 17797118 17797118 C T TOM1L2 Missense_Mutation p.E75K 0.14 deleterious(0) probably_damaging(0.977) TCGA-MV-A51V-01 17 17942322 17942322 C G ATPAF2 Missense_Mutation p.W2C 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MV-A51V-01 17 18682425 18682425 G C FBXW10 Missense_Mutation p.K991N 0.32 deleterious(0.02) benign(0.111) TCGA-MV-A51V-01 17 18967291 18967291 C G SNORD3B-2 RNA 0.06 TCGA-MV-A51V-01 17 19316421 19316421 C T RNF112 Silent p.F184F 0.21 TCGA-MV-A51V-01 17 20156897 20156897 C T SPECC1 Missense_Mutation p.S893L 0.26 tolerated(0.12) benign(0.271) TCGA-MV-A51V-01 17 2202364 2202364 G C SMG6 Silent p.T561T 0.04 TCGA-MV-A51V-01 17 25758386 25758386 C T TBC1D3P5 RNA 0.17 TCGA-MV-A51V-01 17 26684873 26684873 C A TMEM199 Silent p.I60I 0.13 TCGA-MV-A51V-01 17 26938792 26938792 C T SGK494 Missense_Mutation p.E239K 0.22 deleterious(0.03) benign(0.166) TCGA-MV-A51V-01 17 26962381 26962381 C G KIAA0100 Missense_Mutation p.A742P 0.06 deleterious(0.03) possibly_damaging(0.723) TCGA-MV-A51V-01 17 27208293 27208293 C T FLOT2 Missense_Mutation p.E339K 0.08 deleterious(0.01) possibly_damaging(0.573) TCGA-MV-A51V-01 17 27902476 27902476 C T GIT1 Silent p.K622K 0.10 TCGA-MV-A51V-01 17 27937754 27937754 C A ANKRD13B Missense_Mutation p.L292I 0.14 deleterious(0.01) probably_damaging(0.976) TCGA-MV-A51V-01 17 27958166 27958166 G C SSH2 Missense_Mutation p.S1322C 0.10 tolerated_low_confidence(0.09) benign(0.018) TCGA-MV-A51V-01 17 27958625 27958625 G A SSH2 Missense_Mutation p.S1169F 0.13 tolerated_low_confidence(0.69) benign(0.003) TCGA-MV-A51V-01 17 27958627 27958627 G A SSH2 Silent p.L1168L 0.13 TCGA-MV-A51V-01 17 28772894 28772894 C T CPD Missense_Mutation p.S910L 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-MV-A51V-01 17 29220939 29220939 G A ATAD5 Missense_Mutation p.D1690N 0.15 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 17 29221634 29221634 C G ATAD5 Missense_Mutation p.L1784V 0.11 tolerated(0.16) possibly_damaging(0.698) TCGA-MV-A51V-01 17 29587424 29587424 G T NF1 Missense_Mutation p.D1490Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 17 2966410 2966410 G T OR1D5 Silent p.T164T 0.10 TCGA-MV-A51V-01 17 29683574 29683574 G C NF1 Missense_Mutation p.R2571T 0.08 deleterious_low_confidence(0.04) probably_damaging(0.942) TCGA-MV-A51V-01 17 30207601 30207601 G C UTP6 Missense_Mutation p.L320V 0.06 tolerated(0.32) benign(0.047) TCGA-MV-A51V-01 17 3029941 3029941 C G OR1G1 Missense_Mutation p.R302T 0.13 tolerated(0.1) benign(0) TCGA-MV-A51V-01 17 3030222 3030222 G T OR1G1 Silent p.L208L 0.29 TCGA-MV-A51V-01 17 31048095 31048095 C G MYO1D Missense_Mutation p.R620T 0.08 deleterious(0) probably_damaging(0.982) TCGA-MV-A51V-01 17 31076014 31076014 G C MYO1D Nonsense_Mutation p.S493* 0.09 TCGA-MV-A51V-01 17 35580517 35580517 G A ACACA Silent p.L1160L 0.08 TCGA-MV-A51V-01 17 36352524 36352524 G A RP11-1407O15.2 Silent p.V421V 0.46 TCGA-MV-A51V-01 17 36358880 36358880 G C RP11-1407O15.2 Missense_Mutation p.P271A 0.10 TCGA-MV-A51V-01 17 36487274 36487274 G A GPR179 Silent p.F726F 0.10 TCGA-MV-A51V-01 17 3657194 3657194 C T ITGAE Silent p.K470K 0.43 TCGA-MV-A51V-01 17 36912175 36912175 G T PSMB3 Missense_Mutation p.L76F 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-MV-A51V-01 17 37564158 37564158 G A MED1 Missense_Mutation p.S1439F 0.08 deleterious_low_confidence(0) benign(0.184) TCGA-MV-A51V-01 17 37564386 37564386 G C MED1 Nonsense_Mutation p.S1363* 0.10 TCGA-MV-A51V-01 17 37576139 37576139 G A MED1 Silent p.L376L 0.06 TCGA-MV-A51V-01 17 37627460 37627460 G C CDK12 Missense_Mutation p.D459H 0.18 probably_damaging(0.969) TCGA-MV-A51V-01 17 37822005 37822005 G A TCAP Silent p.E49E 0.53 TCGA-MV-A51V-01 17 37880261 37880261 G T ERBB2 Missense_Mutation p.D769Y 0.45 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 17 37922081 37922081 G C IKZF3 Missense_Mutation p.H498D 0.19 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 17 38066075 38066075 C A GSDMB Silent p.L170L 0.08 TCGA-MV-A51V-01 17 38928098 38928098 G C KRT26 Missense_Mutation p.L90V 0.11 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 17 39684475 39684475 A G KRT19 Missense_Mutation p.S9P 0.60 tolerated(0.2) benign(0.184) TCGA-MV-A51V-01 17 39978063 39978063 G A FKBP10 Silent p.P519P 0.15 TCGA-MV-A51V-01 17 40353671 40353671 G C STAT5B 3'UTR 0.31 TCGA-MV-A51V-01 17 40451836 40451836 G C STAT5A Missense_Mutation p.Q206H 0.07 deleterious(0.05) possibly_damaging(0.834) TCGA-MV-A51V-01 17 40985554 40985554 G T PSME3 5'UTR 0.41 TCGA-MV-A51V-01 17 40985624 40985624 G T PSME3 5'UTR 0.36 TCGA-MV-A51V-01 17 40986883 40986883 G C PSME3 Missense_Mutation p.G78A 0.48 tolerated(0.48) benign(0.013) TCGA-MV-A51V-01 17 40991016 40991016 G C PSME3 Missense_Mutation p.D190H 0.36 deleterious(0.01) probably_damaging(0.917) TCGA-MV-A51V-01 17 41582143 41582143 G C DHX8 Missense_Mutation p.E560Q 0.20 tolerated(0.16) benign(0.391) TCGA-MV-A51V-01 17 41585773 41585773 G C DHX8 Missense_Mutation p.R796T 0.07 deleterious(0) probably_damaging(0.992) TCGA-MV-A51V-01 17 42274724 42274724 G T ATXN7L3 Missense_Mutation p.F76L 0.10 tolerated(0.4) benign(0.016) TCGA-MV-A51V-01 17 43923165 43923165 C G SPPL2C Nonsense_Mutation p.S298* 0.11 TCGA-MV-A51V-01 17 4439451 4439451 C A SPNS2 Missense_Mutation p.S475R 0.21 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 17 4439562 4439562 C T SPNS2 Missense_Mutation p.S483L 0.16 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 17 4442929 4442929 C T MYBBP1A Silent p.Q1256Q 0.12 TCGA-MV-A51V-01 17 4443774 4443774 C G MYBBP1A Silent p.L1101L 0.12 TCGA-MV-A51V-01 17 45008505 45008505 C T GOSR2 Silent p.F45F 0.25 TCGA-MV-A51V-01 17 45362060 45362060 G C ITGB3 Missense_Mutation p.D205H 0.06 tolerated(0.06) benign(0.003) TCGA-MV-A51V-01 17 45669324 45669324 C T NPEPPS Silent p.V421V 0.16 TCGA-MV-A51V-01 17 45915270 45915270 G T SCRN2 Silent p.L406L 0.28 TCGA-MV-A51V-01 17 47904114 47904114 C T KAT7 Nonsense_Mutation p.Q563* 0.13 TCGA-MV-A51V-01 17 48753812 48753812 G C ABCC3 Missense_Mutation p.E1081Q 0.10 tolerated(0.3) possibly_damaging(0.644) TCGA-MV-A51V-01 17 4881898 4881898 G A CAMTA2 Missense_Mutation p.P579S 0.34 tolerated(0.07) probably_damaging(0.999) TCGA-MV-A51V-01 17 49118940 49118940 C T SPAG9 Silent p.Q221Q 0.09 TCGA-MV-A51V-01 17 5073859 5073859 G A USP6 Silent p.G1201G 0.09 TCGA-MV-A51V-01 17 53084927 53084927 C G STXBP4 Missense_Mutation p.S212C 0.04 deleterious(0.01) benign(0.021) TCGA-MV-A51V-01 17 5377914 5377914 A G DERL2 3'UTR 0.16 TCGA-MV-A51V-01 17 55038159 55038159 A C COIL Silent p.L74L 0.25 TCGA-MV-A51V-01 17 55962592 55962592 C A CUEDC1 Nonsense_Mutation p.E112* 0.28 TCGA-MV-A51V-01 17 57262550 57262550 G C PRR11 Missense_Mutation p.Q88H 0.07 tolerated(0.08) benign(0.126) TCGA-MV-A51V-01 17 57958340 57958340 C T TUBD1 Missense_Mutation p.G151E 0.06 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 17 57990070 57990070 G A RPS6KB1 Missense_Mutation p.E73K 0.16 deleterious(0.02) probably_damaging(0.974) TCGA-MV-A51V-01 17 57990079 57990079 G C RPS6KB1 Missense_Mutation p.E76Q 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-MV-A51V-01 17 60088284 60088284 G C MED13 Missense_Mutation p.Q532E 0.06 tolerated(1) benign(0.205) TCGA-MV-A51V-01 17 61684690 61684690 G C TACO1 Missense_Mutation p.G187R 0.36 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 17 62553825 62553825 G C SMURF2 Silent p.L444L 0.30 TCGA-MV-A51V-01 17 62750722 62750722 C G hsa-mir-6080 RNA 0.04 TCGA-MV-A51V-01 17 64876673 64876673 G C CACNG5 Splice_Site p.X95_splice 0.06 TCGA-MV-A51V-01 17 65026632 65026632 G C CACNG4 Missense_Mutation p.D166H 0.06 deleterious(0.03) probably_damaging(0.995) TCGA-MV-A51V-01 17 65103740 65103740 C T HELZ Missense_Mutation p.E1596K 0.09 deleterious_low_confidence(0) unknown(0) TCGA-MV-A51V-01 17 65184665 65184665 G A HELZ Missense_Mutation p.A311V 0.39 deleterious(0.01) benign(0.368) TCGA-MV-A51V-01 17 66126411 66126411 C T LRRC37A16P RNA 0.07 TCGA-MV-A51V-01 17 68172450 68172450 G A KCNJ2 Missense_Mutation p.E424K 0.09 deleterious_low_confidence(0) benign(0.173) TCGA-MV-A51V-01 17 71282072 71282072 G A CDC42EP4 Silent p.L190L 0.19 TCGA-MV-A51V-01 17 72767989 72767989 C G NAT9 Silent p.T166T 0.07 TCGA-MV-A51V-01 17 72921725 72921725 G C OTOP2 Missense_Mutation p.E130Q 0.15 tolerated(0.51) benign(0.428) TCGA-MV-A51V-01 17 73089821 73089821 C A SLC16A5 Missense_Mutation p.F30L 0.10 deleterious(0.03) probably_damaging(0.919) TCGA-MV-A51V-01 17 73229201 73229201 C A NUP85 Silent p.L521L 0.06 TCGA-MV-A51V-01 17 73565355 73565355 C A LLGL2 Silent p.I510I 0.07 TCGA-MV-A51V-01 17 73623412 73623412 G C RECQL5 3'UTR 0.21 TCGA-MV-A51V-01 17 7388152 7388152 C G POLR2A Missense_Mutation p.F23L 0.60 possibly_damaging(0.649) TCGA-MV-A51V-01 17 73906817 73906817 G C FBF1 Missense_Mutation p.S1130C 0.28 deleterious(0.02) possibly_damaging(0.601) TCGA-MV-A51V-01 17 7406993 7406993 C G POLR2A Missense_Mutation p.F1041L 0.14 benign(0.119) TCGA-MV-A51V-01 17 74077319 74077319 C G EXOC7 3'Flank 0.08 TCGA-MV-A51V-01 17 7414540 7414540 G C POLR2A Missense_Mutation p.E1274Q 0.27 benign(0.378) TCGA-MV-A51V-01 17 7415537 7415537 G T POLR2A Nonsense_Mutation p.E1456* 0.13 TCGA-MV-A51V-01 17 74288722 74288722 C T QRICH2 Missense_Mutation p.D530N 0.34 tolerated(0.47) benign(0.144) TCGA-MV-A51V-01 17 74729741 74729741 C G METTL23 Silent p.V182V 0.19 TCGA-MV-A51V-01 17 74936555 74936555 C A MGAT5B Missense_Mutation p.F561L 0.08 deleterious(0) possibly_damaging(0.864) TCGA-MV-A51V-01 17 7612595 7612595 G A EFNB3 Missense_Mutation p.V242M 0.28 deleterious(0) possibly_damaging(0.807) TCGA-MV-A51V-01 17 76166981 76166981 C T SYNGR2 Silent p.F61F 0.08 TCGA-MV-A51V-01 17 76419834 76419834 C G DNAH17 3'UTR 0.15 TCGA-MV-A51V-01 17 78059852 78059852 G A CCDC40 Silent p.L762L 0.18 TCGA-MV-A51V-01 17 78210772 78210772 C T SLC26A11 Missense_Mutation p.S261F 0.63 tolerated(0.27) benign(0.014) TCGA-MV-A51V-01 17 78263541 78263541 C G RNF213 Silent p.L339L 0.09 TCGA-MV-A51V-01 17 78444775 78444775 G A NPTX1 Silent p.F379F 0.12 TCGA-MV-A51V-01 17 79164486 79164486 G A AZI1 Silent p.A1020A 0.11 TCGA-MV-A51V-01 17 7918229 7918229 G C GUCY2D Missense_Mutation p.E877Q 0.42 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 17 79268677 79268677 G C SLC38A10 Missense_Mutation p.I15M 0.11 deleterious(0.03) probably_damaging(0.964) TCGA-MV-A51V-01 17 79848597 79848597 G A ALYREF Silent p.L120L 0.10 TCGA-MV-A51V-01 17 79848601 79848601 G A ALYREF Silent p.S118S 0.11 TCGA-MV-A51V-01 17 80019597 80019597 C T DUS1L Silent p.R198R 0.12 TCGA-MV-A51V-01 17 80020746 80020746 G A DUS1L Silent p.A167A 0.13 TCGA-MV-A51V-01 17 80606192 80606192 G A WDR45B Missense_Mutation p.H9Y 0.25 tolerated(0.61) benign(0) TCGA-MV-A51V-01 17 8076826 8076826 C T TMEM107 3'Flank 0.10 TCGA-MV-A51V-01 18 12367107 12367107 G A AFG3L2 Missense_Mutation p.P137S 0.43 tolerated(0.08) possibly_damaging(0.53) TCGA-MV-A51V-01 18 13826583 13826583 C A MC5R Missense_Mutation p.F273L 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-MV-A51V-01 18 19153748 19153748 G C ESCO1 Missense_Mutation p.Q353E 0.18 deleterious(0.04) benign(0.043) TCGA-MV-A51V-01 18 21427442 21427442 C T LAMA3 Missense_Mutation p.R1316W 0.08 benign(0.008) TCGA-MV-A51V-01 18 25570262 25570262 T A CDH2 Missense_Mutation p.N466I 0.16 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 18 29497567 29497567 T C TRAPPC8 Missense_Mutation p.H139R 0.11 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 18 29693775 29693775 C T RNF138 Missense_Mutation p.S115F 0.35 deleterious(0.01) possibly_damaging(0.907) TCGA-MV-A51V-01 18 29867276 29867276 A G GAREM Silent p.D428D 0.17 TCGA-MV-A51V-01 18 29867339 29867339 C T GAREM Silent p.R407R 0.16 TCGA-MV-A51V-01 18 40613806 40613806 G A RIT2 Nonsense_Mutation p.Q44* 0.14 TCGA-MV-A51V-01 18 43437963 43437963 C G EPG5 Missense_Mutation p.E2433Q 0.11 tolerated(0.18) benign(0.347) TCGA-MV-A51V-01 18 44560878 44560878 G T TCEB3B Nonsense_Mutation p.S253* 0.09 TCGA-MV-A51V-01 18 44625668 44625668 C T KATNAL2 Silent p.L350L 0.09 TCGA-MV-A51V-01 18 46956731 46956731 G A DYM Missense_Mutation p.P12S 0.10 tolerated(1) benign(0.003) TCGA-MV-A51V-01 18 48581195 48581195 G C SMAD4 Missense_Mutation p.E167Q 0.30 tolerated(0.46) benign(0.008) TCGA-MV-A51V-01 18 54278230 54278230 G A TXNL1 Silent p.F278F 0.15 TCGA-MV-A51V-01 18 580696 580696 G T CETN1 Missense_Mutation p.K96N 0.08 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 18 61306934 61306934 G C SERPINB4 Missense_Mutation p.F182L 0.11 tolerated(0.05) possibly_damaging(0.669) TCGA-MV-A51V-01 18 61326758 61326758 C T SERPINB3 Missense_Mutation p.D76N 0.41 deleterious(0.04) benign(0.005) TCGA-MV-A51V-01 18 66505961 66505961 G C CCDC102B Missense_Mutation p.D209H 0.19 deleterious(0.03) probably_damaging(0.975) TCGA-MV-A51V-01 18 67872374 67872374 C T RTTN Missense_Mutation p.R70K 0.35 tolerated(0.98) benign(0.008) TCGA-MV-A51V-01 18 70461611 70461611 C T NETO1 Silent p.L166L 0.08 TCGA-MV-A51V-01 18 72345062 72345062 A - ZNF407 Frame_Shift_Del p.V697* 0.18 TCGA-MV-A51V-01 18 73139580 73139580 G A SMIM21 5'UTR 0.15 TCGA-MV-A51V-01 18 77171309 77171309 C T NFATC1 Missense_Mutation p.S332L 0.14 deleterious(0.04) benign(0.356) TCGA-MV-A51V-01 18 77806039 77806039 G A RBFA Missense_Mutation p.D306N 0.29 tolerated(0.12) benign(0.109) TCGA-MV-A51V-01 18 8143718 8143718 C T PTPRM Silent p.I747I 0.13 TCGA-MV-A51V-01 18 9256539 9256539 G T ANKRD12 Nonsense_Mutation p.E1092* 0.11 TCGA-MV-A51V-01 18 9525819 9525819 C T RALBP1 Silent p.L439L 0.13 TCGA-MV-A51V-01 19 1031129 1031129 C A CNN2 Silent p.L41L 0.22 TCGA-MV-A51V-01 19 10444638 10444638 G T ICAM3 Missense_Mutation p.H513Q 0.07 tolerated(1) benign(0.001) TCGA-MV-A51V-01 19 1065158 1065158 G C ABCA7 Silent p.T2091T 0.25 TCGA-MV-A51V-01 19 1065165 1065165 G C ABCA7 Missense_Mutation p.E2094Q 0.27 deleterious(0) probably_damaging(0.931) TCGA-MV-A51V-01 19 1065512 1065512 G C ABCA7 3'UTR 0.33 TCGA-MV-A51V-01 19 10662773 10662773 C T ATG4D Silent p.V366V 0.09 TCGA-MV-A51V-01 19 10670507 10670507 G A KRI1 Silent p.F308F 0.20 TCGA-MV-A51V-01 19 10691955 10691955 G T AP1M2 Missense_Mutation p.F220L 0.11 tolerated(0.19) benign(0.327) TCGA-MV-A51V-01 19 10742593 10742593 G C SLC44A2 Missense_Mutation p.E226Q 0.06 deleterious(0.01) benign(0.009) TCGA-MV-A51V-01 19 10939781 10939781 G C DNM2 Missense_Mutation p.E710Q 0.09 tolerated(0.12) possibly_damaging(0.612) TCGA-MV-A51V-01 19 1095360 1095360 G A POLR2E 5'UTR 0.13 TCGA-MV-A51V-01 19 11436165 11436165 G T RAB3D Missense_Mutation p.S190Y 0.20 deleterious(0) possibly_damaging(0.867) TCGA-MV-A51V-01 19 11436181 11436181 C T RAB3D Missense_Mutation p.E185K 0.20 tolerated(0.61) benign(0.041) TCGA-MV-A51V-01 19 11917861 11917861 C T ZNF491 Missense_Mutation p.H365Y 0.14 tolerated(0.93) benign(0.012) TCGA-MV-A51V-01 19 12059471 12059471 G C ZNF700 Missense_Mutation p.R211T 0.33 tolerated(0.65) probably_damaging(0.975) TCGA-MV-A51V-01 19 13050239 13050239 C A CALR Intron 0.12 TCGA-MV-A51V-01 19 13264172 13264172 G A IER2 Missense_Mutation p.E58K 0.42 tolerated(0.39) benign(0.137) TCGA-MV-A51V-01 19 14199286 14199286 G A SAMD1 Silent p.I414I 0.07 TCGA-MV-A51V-01 19 14217608 14217608 C A PRKACA Silent p.G67G 0.16 TCGA-MV-A51V-01 19 14628993 14628993 C A DNAJB1 Missense_Mutation p.D57Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 19 14629110 14629110 C G DNAJB1 Missense_Mutation p.E18Q 0.23 tolerated(0.08) benign(0.365) TCGA-MV-A51V-01 19 1481869 1481869 G A PCSK4 Silent p.L719L 0.30 TCGA-MV-A51V-01 19 15529789 15529789 G C AKAP8L 5'UTR 0.17 TCGA-MV-A51V-01 19 15789068 15789068 C G CYP4F12 Intron 0.11 TCGA-MV-A51V-01 19 17313011 17313011 G C MYO9B Missense_Mutation p.E1579Q 0.12 tolerated(0.15) possibly_damaging(0.694) TCGA-MV-A51V-01 19 17444527 17444527 C G ANO8 Missense_Mutation p.E63D 0.23 deleterious(0.01) possibly_damaging(0.833) TCGA-MV-A51V-01 19 17948818 17948818 C T JAK3 Missense_Mutation p.E542K 0.10 tolerated(0.09) possibly_damaging(0.699) TCGA-MV-A51V-01 19 18502812 18502812 C T LRRC25 Silent p.V301V 0.13 TCGA-MV-A51V-01 19 18864349 18864349 C A CRTC1 Nonsense_Mutation p.S209* 0.15 TCGA-MV-A51V-01 19 18974296 18974296 C G UPF1 Missense_Mutation p.L884V 0.22 deleterious(0.01) benign(0.027) TCGA-MV-A51V-01 19 19375542 19375542 A C TM6SF2 Silent p.L355L 0.16 TCGA-MV-A51V-01 19 19378831 19378831 G A TM6SF2 Silent p.L225L 0.29 TCGA-MV-A51V-01 19 19378832 19378832 A T TM6SF2 Missense_Mutation p.L225H 0.29 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 19 19654834 19654834 C G CILP2 Missense_Mutation p.L494V 0.16 tolerated(0.17) benign(0.37) TCGA-MV-A51V-01 19 1978471 1978471 C T CSNK1G2 Missense_Mutation p.H87Y 0.26 deleterious(0.04) benign(0.263) TCGA-MV-A51V-01 19 19823030 19823030 C G ZNF14 Missense_Mutation p.E354Q 0.12 tolerated(0.11) probably_damaging(0.912) TCGA-MV-A51V-01 19 20727780 20727780 G C ZNF737 Missense_Mutation p.S410C 0.12 deleterious(0) unknown(0) TCGA-MV-A51V-01 19 20975348 20975348 G C ZNF66 Missense_Mutation p.E12Q 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-MV-A51V-01 19 21558699 21558699 C T ZNF738 Silent p.I84I 0.24 TCGA-MV-A51V-01 19 21910636 21910636 C T ZNF100 Missense_Mutation p.E160K 0.12 tolerated(0.5) benign(0.04) TCGA-MV-A51V-01 19 2271493 2271493 G C OAZ1 Missense_Mutation p.Q85H 0.22 deleterious(0.04) possibly_damaging(0.707) TCGA-MV-A51V-01 19 23578241 23578241 C T ZNF91 5'UTR 0.09 TCGA-MV-A51V-01 19 2408487 2408487 G C TMPRSS9 Missense_Mutation p.D292H 0.39 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 19 30505801 30505801 C G URI1 Missense_Mutation p.S478C 0.10 deleterious(0.02) benign(0.403) TCGA-MV-A51V-01 19 33183106 33183106 C A NUDT19 Missense_Mutation p.F80L 0.18 tolerated(0.2) possibly_damaging(0.677) TCGA-MV-A51V-01 19 33183154 33183154 C G NUDT19 Missense_Mutation p.F96L 0.11 tolerated(0.68) benign(0) TCGA-MV-A51V-01 19 33183334 33183334 C G NUDT19 Silent p.L156L 0.17 TCGA-MV-A51V-01 19 34297855 34297855 C T KCTD15 Silent p.F110F 0.11 TCGA-MV-A51V-01 19 34912559 34912559 G C PDCD2L Missense_Mutation p.K311N 0.18 tolerated(0.15) benign(0.013) TCGA-MV-A51V-01 19 35258247 35258247 C G ZNF599 Missense_Mutation p.R72T 0.10 tolerated(0.07) benign(0.005) TCGA-MV-A51V-01 19 36122281 36122281 G A RBM42 Missense_Mutation p.R139Q 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-MV-A51V-01 19 36243370 36243370 C G LIN37 Nonsense_Mutation p.S49* 0.21 TCGA-MV-A51V-01 19 36940886 36940886 C G ZNF566 Missense_Mutation p.E85Q 0.09 tolerated(0.15) benign(0.015) TCGA-MV-A51V-01 19 37005978 37005978 G T ZNF260 Missense_Mutation p.H55N 0.07 deleterious(0.01) benign(0.242) TCGA-MV-A51V-01 19 3760190 3760190 G C APBA3 Missense_Mutation p.L25V 0.16 deleterious_low_confidence(0.04) benign(0.018) TCGA-MV-A51V-01 19 37676089 37676089 C A ZNF585B 3'UTR 0.11 TCGA-MV-A51V-01 19 37677932 37677932 C G ZNF585B Missense_Mutation p.Q169H 0.08 tolerated(0.34) benign(0.009) TCGA-MV-A51V-01 19 37853220 37853220 C T HKR1 Nonsense_Mutation p.Q175* 0.09 TCGA-MV-A51V-01 19 37974798 37974798 G C ZNF570 Missense_Mutation p.E92Q 0.06 tolerated(0.07) benign(0.113) TCGA-MV-A51V-01 19 38160586 38160586 G C ZNF781 Missense_Mutation p.T155R 0.11 tolerated(0.52) benign(0.438) TCGA-MV-A51V-01 19 38861478 38861478 T C CATSPERG 3'UTR 0.12 TCGA-MV-A51V-01 19 3964266 3964278 TGTTCTTGAACTC - DAPK3 Frame_Shift_Del p.E173Sfs*13 0.08 TCGA-MV-A51V-01 19 39804704 39804704 C G LRFN1 Missense_Mutation p.E425Q 0.27 tolerated(0.08) benign(0.166) TCGA-MV-A51V-01 19 39897562 39897562 C T ZFP36 Silent p.I12I 0.19 TCGA-MV-A51V-01 19 39915419 39915419 G C PLEKHG2 Missense_Mutation p.E1216Q 0.04 deleterious_low_confidence(0) benign(0.157) TCGA-MV-A51V-01 19 4033124 4033124 G C PIAS4 Missense_Mutation p.D312H 0.09 deleterious(0) possibly_damaging(0.907) TCGA-MV-A51V-01 19 41066277 41066277 C T SPTBN4 Silent p.I1961I 0.16 TCGA-MV-A51V-01 19 41257336 41257336 C T SNRPA Missense_Mutation p.P8L 0.19 deleterious(0.02) benign(0.025) TCGA-MV-A51V-01 19 41812478 41812478 G A HNRNPUL1 3'UTR 0.09 TCGA-MV-A51V-01 19 41944203 41944203 C G ATP5SL Silent p.L51L 0.23 TCGA-MV-A51V-01 19 41945805 41945805 C G ATP5SL 5'Flank 0.07 TCGA-MV-A51V-01 19 42351819 42351819 C T DMRTC2 Silent p.V80V 0.16 TCGA-MV-A51V-01 19 42492627 42492627 C A ATP1A3 Splice_Site p.X44_splice 0.11 TCGA-MV-A51V-01 19 42563642 42563642 G A GRIK5 Silent p.L182L 0.22 TCGA-MV-A51V-01 19 42838364 42838364 C T MEGF8 Missense_Mutation p.S186L 0.56 tolerated(0.3) benign(0.406) TCGA-MV-A51V-01 19 43233431 43233431 C G PSG3 Missense_Mutation p.E363Q 0.07 tolerated(0.46) benign(0.122) TCGA-MV-A51V-01 19 43523196 43523196 C G PSG11 Missense_Mutation p.E145D 0.04 tolerated(0.06) benign(0.062) TCGA-MV-A51V-01 19 43586655 43586655 C T PSG2 Intron 0.38 TCGA-MV-A51V-01 19 43708284 43708284 G C PSG4 Missense_Mutation p.L62V 0.11 tolerated(0.2) possibly_damaging(0.868) TCGA-MV-A51V-01 19 43859724 43859724 G C CD177 Nonstop_Mutation p.*146Sext*29 0.24 TCGA-MV-A51V-01 19 44057131 44057131 C G XRCC1 Intron 0.18 TCGA-MV-A51V-01 19 44127430 44127430 G C CADM4 3'UTR 0.15 TCGA-MV-A51V-01 19 44127491 44127491 G C CADM4 Missense_Mutation p.F386L 0.20 deleterious(0) benign(0.112) TCGA-MV-A51V-01 19 4429702 4429702 C A CHAF1A Intron 0.12 TCGA-MV-A51V-01 19 44611268 44611268 G A ZNF224 Missense_Mutation p.D319N 0.09 tolerated(0.21) possibly_damaging(0.752) TCGA-MV-A51V-01 19 45176158 45176158 G C CEACAM19 Missense_Mutation p.D116H 0.10 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 19 45412502 45412502 C T APOE Missense_Mutation p.H317Y 0.34 tolerated_low_confidence(0.37) benign(0.001) TCGA-MV-A51V-01 19 4548332 4548332 G C SEMA6B Nonsense_Mutation p.S466* 0.11 TCGA-MV-A51V-01 19 45867770 45867770 G C ERCC2 Missense_Mutation p.H210Q 0.54 tolerated(0.56) possibly_damaging(0.547) TCGA-MV-A51V-01 19 45873570 45873570 G A ERCC2 Intron 0.25 TCGA-MV-A51V-01 19 46094840 46094840 G A GPR4 Silent p.F95F 0.07 TCGA-MV-A51V-01 19 46177433 46177433 C T GIPR Silent p.F162F 0.06 TCGA-MV-A51V-01 19 46283531 46283531 C T DMPK 5'UTR 0.10 TCGA-MV-A51V-01 19 46444195 46444195 C T NOVA2 Silent p.L135L 0.31 TCGA-MV-A51V-01 19 47278983 47278983 G A SLC1A5 Silent p.L470L 0.26 TCGA-MV-A51V-01 19 47724989 47724989 G C BBC3 Missense_Mutation p.A252G 0.11 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-MV-A51V-01 19 47969401 47969401 G C SLC8A2 Missense_Mutation p.S87C 0.30 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 19 48197763 48197763 C G GLTSCR1 Missense_Mutation p.S892C 0.43 unknown(0) TCGA-MV-A51V-01 19 4839198 4839198 C G PLIN3 3'UTR 0.08 TCGA-MV-A51V-01 19 48647171 48647171 C T LIG1 Missense_Mutation p.V276M 0.42 deleterious(0.03) benign(0.048) TCGA-MV-A51V-01 19 49437014 49437014 C T DHDH Silent p.L12L 0.12 TCGA-MV-A51V-01 19 50491631 50491631 C G VRK3 Missense_Mutation p.Q405H 0.07 deleterious(0) possibly_damaging(0.868) TCGA-MV-A51V-01 19 51128754 51128754 C T SYT3 Silent p.K490K 0.24 TCGA-MV-A51V-01 19 51361458 51361458 C T KLK3 Missense_Mutation p.S127L 0.36 tolerated(0.21) possibly_damaging(0.635) TCGA-MV-A51V-01 19 51995071 51995071 C T SIGLEC12 Missense_Mutation p.E538K 0.13 tolerated(0.14) benign(0.093) TCGA-MV-A51V-01 19 5214458 5214458 T C PTPRS Missense_Mutation p.T1510A 0.19 deleterious(0.02) benign(0.005) TCGA-MV-A51V-01 19 53269724 53269724 G A ZNF600 Missense_Mutation p.L429F 0.51 tolerated(0.06) probably_damaging(0.999) TCGA-MV-A51V-01 19 53912879 53912879 G C ZNF765 3'UTR 0.10 TCGA-MV-A51V-01 19 53950497 53950497 G A ZNF761 RNA 0.08 TCGA-MV-A51V-01 19 54304579 54304579 C G NLRP12 Silent p.L886L 0.28 TCGA-MV-A51V-01 19 548925 548925 G C GZMM Missense_Mutation p.D118H 0.14 deleterious(0.01) possibly_damaging(0.827) TCGA-MV-A51V-01 19 55649377 55649377 C G TNNT1 Missense_Mutation p.K151N 0.48 deleterious(0) probably_damaging(0.944) TCGA-MV-A51V-01 19 56190131 56190131 C G EPN1 Silent p.L157L 0.27 TCGA-MV-A51V-01 19 5668276 5668276 G C SAFB Missense_Mutation p.D910H 0.13 tolerated_low_confidence(0.22) unknown(0) TCGA-MV-A51V-01 19 57036844 57036844 C G ZNF471 Missense_Mutation p.Q470E 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-MV-A51V-01 19 57647361 57647361 T C ZIM3 Missense_Mutation p.Q115R 0.13 tolerated(0.23) benign(0.004) TCGA-MV-A51V-01 19 57802864 57802864 G T ZNF460 Nonsense_Mutation p.E319* 0.26 TCGA-MV-A51V-01 19 57840025 57840025 G C ZNF543 Missense_Mutation p.E399Q 0.15 tolerated(0.12) possibly_damaging(0.758) TCGA-MV-A51V-01 19 57840254 57840254 G C ZNF543 Missense_Mutation p.G475A 0.18 deleterious(0.02) possibly_damaging(0.7) TCGA-MV-A51V-01 19 57931119 57931119 G A AC003002.6 Missense_Mutation p.E99K 0.41 tolerated(0.11) benign(0.065) TCGA-MV-A51V-01 19 58016043 58016043 G C ZNF773 Missense_Mutation p.E18Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 19 58437633 58437633 C G ZNF418 Missense_Mutation p.R639T 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-MV-A51V-01 19 58437661 58437661 C A ZNF418 Nonsense_Mutation p.E630* 0.34 TCGA-MV-A51V-01 19 58437902 58437902 C G ZNF418 Missense_Mutation p.Q549H 0.32 tolerated(0.5) benign(0.16) TCGA-MV-A51V-01 19 58438534 58438534 C A ZNF418 Nonsense_Mutation p.E339* 0.27 TCGA-MV-A51V-01 19 58491507 58491507 C A ZNF606 Missense_Mutation p.D181Y 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-MV-A51V-01 19 58868555 58868555 G A ZNF497 Silent p.L149L 0.29 TCGA-MV-A51V-01 19 59063077 59063077 G C CHMP2A Nonsense_Mutation p.S203* 0.06 TCGA-MV-A51V-01 19 59074569 59074569 C G MZF1 Missense_Mutation p.D359H 0.14 tolerated(0.09) possibly_damaging(0.902) TCGA-MV-A51V-01 19 619676 619676 C A POLRMT Missense_Mutation p.Q992H 0.06 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 19 6591038 6591038 C G CD70 5'UTR 0.40 TCGA-MV-A51V-01 19 6712594 6712594 G T C3 Silent p.I348I 0.06 TCGA-MV-A51V-01 19 6854018 6854018 G A VAV1 Missense_Mutation p.R798Q 0.10 tolerated(0.37) possibly_damaging(0.713) TCGA-MV-A51V-01 19 6926454 6926454 G A EMR1 Silent p.V688V 0.29 TCGA-MV-A51V-01 19 6990856 6990856 G C EMR4P RNA 0.20 TCGA-MV-A51V-01 19 7142849 7142849 G A INSR Silent p.V840V 0.09 TCGA-MV-A51V-01 19 7518504 7518504 C G ARHGEF18 Silent p.L481L 0.15 TCGA-MV-A51V-01 19 7571947 7571947 G C C19orf45 Missense_Mutation p.D405H 0.38 tolerated(0.11) probably_damaging(0.988) TCGA-MV-A51V-01 19 757912 757912 G A MISP Silent p.L322L 0.11 TCGA-MV-A51V-01 19 7592423 7592423 C A MCOLN1 Missense_Mutation p.P197T 0.13 deleterious(0.03) probably_damaging(1) TCGA-MV-A51V-01 19 7689193 7689193 C A XAB2 Nonsense_Mutation p.E321* 0.07 TCGA-MV-A51V-01 19 7697404 7697404 C G PCP2 Splice_Site p.X56_splice 0.06 TCGA-MV-A51V-01 19 7796951 7796951 G C CLEC4G Missense_Mutation p.S13C 0.09 tolerated(0.21) possibly_damaging(0.598) TCGA-MV-A51V-01 19 7927155 7927155 G C EVI5L Missense_Mutation p.E598Q 0.20 tolerated(0.07) possibly_damaging(0.575) TCGA-MV-A51V-01 19 831823 831823 C G AZU1 Silent p.L234L 0.23 TCGA-MV-A51V-01 19 8455381 8455381 G A RAB11B Intron 0.10 TCGA-MV-A51V-01 19 8563920 8563920 G C PRAM1 Missense_Mutation p.Q258E 0.10 tolerated(1) benign(0.001) TCGA-MV-A51V-01 19 8606846 8606846 C G MYO1F Missense_Mutation p.E518D 0.07 tolerated(0.48) benign(0.075) TCGA-MV-A51V-01 19 9068499 9068499 T C MUC16 Missense_Mutation p.Y6316C 0.08 unknown(0) TCGA-MV-A51V-01 19 9071115 9071115 G C MUC16 Nonsense_Mutation p.S5444* 0.09 TCGA-MV-A51V-01 19 9084334 9084334 G A MUC16 Missense_Mutation p.S2494F 0.11 unknown(0) TCGA-MV-A51V-01 19 9407043 9407043 G T ZNF699 Missense_Mutation p.S346Y 0.09 tolerated(1) benign(0.027) TCGA-MV-A51V-01 19 9676899 9676899 G C ZNF121 Nonsense_Mutation p.S297* 0.15 TCGA-MV-A51V-01 1 100608752 100608752 A G TRMT13 Silent p.Q243Q 0.29 TCGA-MV-A51V-01 1 10318580 10318580 C A KIF1B Missense_Mutation p.N71K 0.11 tolerated(1) benign(0.026) TCGA-MV-A51V-01 1 103470167 103470167 C A COL11A1 Missense_Mutation p.M632I 0.28 unknown(0) TCGA-MV-A51V-01 1 10364298 10364298 C G KIF1B Intron 0.10 TCGA-MV-A51V-01 1 108319912 108319912 G C VAV3 Missense_Mutation p.F129L 0.18 deleterious(0) possibly_damaging(0.657) TCGA-MV-A51V-01 1 108686333 108686333 C G SLC25A24 Splice_Site p.X311_splice 0.17 TCGA-MV-A51V-01 1 109359672 109359672 C G AKNAD1 Missense_Mutation p.E793Q 0.09 tolerated(0.05) benign(0.091) TCGA-MV-A51V-01 1 109369911 109369911 C G AKNAD1 Missense_Mutation p.E618Q 0.34 deleterious(0.01) probably_damaging(0.948) TCGA-MV-A51V-01 1 109394465 109394465 C G AKNAD1 Missense_Mutation p.K274N 0.14 tolerated(1) benign(0) TCGA-MV-A51V-01 1 109553866 109553866 G T WDR47 Missense_Mutation p.H275N 0.16 tolerated(0.46) possibly_damaging(0.684) TCGA-MV-A51V-01 1 109656341 109656341 G C KIAA1324 5'Flank 0.10 TCGA-MV-A51V-01 1 110172909 110172909 C G AMPD2 Missense_Mutation p.P734A 0.05 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 1 110172910 110172910 C T AMPD2 Missense_Mutation p.P734L 0.05 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 1 110280346 110280346 C A GSTM3 Nonsense_Mutation p.E134* 0.11 TCGA-MV-A51V-01 1 111860605 111860605 C G CHIA Intron 0.13 TCGA-MV-A51V-01 1 112997151 112997151 G C CTTNBP2NL Missense_Mutation p.E137D 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-MV-A51V-01 1 114247293 114247293 G T PHTF1 Missense_Mutation p.L600I 0.16 deleterious(0) probably_damaging(0.925) TCGA-MV-A51V-01 1 114439174 114439174 C T AP4B1 Intron 0.17 TCGA-MV-A51V-01 1 114450738 114450738 C G DCLRE1B Missense_Mutation p.L155V 0.17 deleterious(0.04) probably_damaging(0.955) TCGA-MV-A51V-01 1 115266549 115266549 G A CSDE1 Missense_Mutation p.P656S 0.41 deleterious(0.02) possibly_damaging(0.486) TCGA-MV-A51V-01 1 11596695 11596695 C A PTCHD2 Silent p.L1377L 0.16 TCGA-MV-A51V-01 1 117484346 117484346 G A PTGFRN Missense_Mutation p.R20Q 0.07 tolerated(0.52) benign(0.004) TCGA-MV-A51V-01 1 117484361 117484361 G C PTGFRN Missense_Mutation p.R25T 0.08 tolerated(0.35) possibly_damaging(0.697) TCGA-MV-A51V-01 1 118455280 118455280 C T GDAP2 Silent p.L114L 0.21 TCGA-MV-A51V-01 1 118628569 118628569 C T SPAG17 Missense_Mutation p.E580K 0.58 deleterious(0.02) probably_damaging(0.997) TCGA-MV-A51V-01 1 11907304 11907304 C A NPPA Missense_Mutation p.D106Y 0.13 deleterious(0) possibly_damaging(0.804) TCGA-MV-A51V-01 1 119929440 119929440 G A HAO2 Missense_Mutation p.E253K 0.09 tolerated(0.19) benign(0.234) TCGA-MV-A51V-01 1 120464368 120464368 C T NOTCH2 Missense_Mutation p.D1760N 0.09 deleterious(0.04) benign(0.311) TCGA-MV-A51V-01 1 120854597 120854597 G A FAM72B 3'UTR 0.12 TCGA-MV-A51V-01 1 12337987 12337987 G A VPS13D Missense_Mutation p.E1448K 0.24 benign(0.156) TCGA-MV-A51V-01 1 12640559 12640559 G A DHRS3 Missense_Mutation p.R111W 0.25 deleterious(0) possibly_damaging(0.867) TCGA-MV-A51V-01 1 12726658 12726658 C G AADACL4 Missense_Mutation p.S379C 0.07 tolerated(1) benign(0.009) TCGA-MV-A51V-01 1 1273648 1273648 C G DVL1 Splice_Site p.X478_splice 0.10 TCGA-MV-A51V-01 1 12980180 12980180 C T PRAMEF7 Missense_Mutation p.R458C 0.08 probably_damaging(0.931) TCGA-MV-A51V-01 1 1342523 1342523 C T MRPL20 Silent p.L25L 0.18 TCGA-MV-A51V-01 1 143912165 143912165 G C FAM72D Missense_Mutation p.S44C 0.09 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 1 145561532 145561532 C G ANKRD35 Nonsense_Mutation p.S407* 0.10 TCGA-MV-A51V-01 1 147091769 147091769 G A BCL9 Missense_Mutation p.R603Q 0.22 tolerated(0.08) probably_damaging(0.945) TCGA-MV-A51V-01 1 148022963 148022963 G C NBPF14 Missense_Mutation p.H183D 0.16 tolerated(0.08) probably_damaging(0.987) TCGA-MV-A51V-01 1 149908133 149908133 G C MTMR11 Intron 0.25 TCGA-MV-A51V-01 1 150418838 150418838 C G RPRD2 Missense_Mutation p.F277L 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-MV-A51V-01 1 150445619 150445619 T A RPRD2 Missense_Mutation p.L1399M 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-MV-A51V-01 1 150526928 150526928 G C ADAMTSL4 Missense_Mutation p.E407Q 0.19 deleterious(0) probably_damaging(0.96) TCGA-MV-A51V-01 1 150689682 150689682 G T HORMAD1 Nonsense_Mutation p.S37* 0.06 TCGA-MV-A51V-01 1 150689730 150689730 G C HORMAD1 Nonsense_Mutation p.S21* 0.06 TCGA-MV-A51V-01 1 150933206 150933206 G C SETDB1 Missense_Mutation p.D890H 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-MV-A51V-01 1 150967131 150967131 G C ANXA9 Missense_Mutation p.E311Q 0.22 deleterious(0) probably_damaging(0.98) TCGA-MV-A51V-01 1 150967797 150967797 G T ANXA9 Nonstop_Mutation p.*346Lext*35 0.24 TCGA-MV-A51V-01 1 151027536 151027536 G C CDC42SE1 Missense_Mutation p.H41D 0.14 deleterious(0) possibly_damaging(0.776) TCGA-MV-A51V-01 1 151678328 151678328 C T CELF3 Missense_Mutation p.D414N 0.56 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 1 151733963 151733963 C T MRPL9 Silent p.L184L 0.06 TCGA-MV-A51V-01 1 152057443 152057443 T C TCHHL1 Nonstop_Mutation p.*905Wext*27 0.06 TCGA-MV-A51V-01 1 152081012 152081012 C G TCHH Missense_Mutation p.E1561Q 0.08 unknown(0) TCGA-MV-A51V-01 1 152081101 152081101 C G TCHH Missense_Mutation p.R1531T 0.08 unknown(0) TCGA-MV-A51V-01 1 152081175 152081175 C A TCHH Missense_Mutation p.Q1506H 0.12 unknown(0) TCGA-MV-A51V-01 1 152081239 152081239 C A TCHH Missense_Mutation p.R1485I 0.06 unknown(0) TCGA-MV-A51V-01 1 152081719 152081719 C G TCHH Missense_Mutation p.R1325T 0.08 unknown(0) TCGA-MV-A51V-01 1 152082047 152082047 C G TCHH Missense_Mutation p.D1216H 0.08 unknown(0) TCGA-MV-A51V-01 1 152082353 152082353 C G TCHH Missense_Mutation p.E1114Q 0.14 unknown(0) TCGA-MV-A51V-01 1 152276705 152276705 C G FLG Missense_Mutation p.E3553Q 0.09 unknown(0) TCGA-MV-A51V-01 1 152277812 152277812 C T FLG Missense_Mutation p.E3184K 0.07 unknown(0) TCGA-MV-A51V-01 1 152283878 152283878 G C FLG Missense_Mutation p.Q1162E 0.17 benign(0.042) TCGA-MV-A51V-01 1 152326282 152326282 G C FLG2 Missense_Mutation p.S1327C 0.26 possibly_damaging(0.675) TCGA-MV-A51V-01 1 153994695 153994695 G A NUP210L Missense_Mutation p.P1475S 0.09 tolerated(0.06) probably_damaging(0.963) TCGA-MV-A51V-01 1 154130029 154130029 C T NUP210L 5'Flank 0.16 TCGA-MV-A51V-01 1 154215710 154215710 C G UBAP2L Missense_Mutation p.I258M 0.08 deleterious(0.01) unknown(0) TCGA-MV-A51V-01 1 154942839 154942839 G A SHC1 Missense_Mutation p.P55L 0.08 deleterious(0.01) probably_damaging(0.958) TCGA-MV-A51V-01 1 154956440 154956440 G C FLAD1 Missense_Mutation p.Q90H 0.07 deleterious_low_confidence(0.03) benign(0.001) TCGA-MV-A51V-01 1 155292068 155292068 C T RUSC1 Silent p.S168S 0.07 TCGA-MV-A51V-01 1 155717411 155717411 G C GON4L 3'Flank 0.24 TCGA-MV-A51V-01 1 155838283 155838283 G C SYT11 Missense_Mutation p.D188H 0.06 deleterious(0) probably_damaging(0.992) TCGA-MV-A51V-01 1 156028236 156028236 C G LAMTOR2 3'UTR 0.13 TCGA-MV-A51V-01 1 156046925 156046925 G A MEX3A Missense_Mutation p.R335W 0.51 deleterious(0) probably_damaging(0.973) TCGA-MV-A51V-01 1 156108870 156108870 G A LMNA Splice_Site p.X657_splice 0.09 TCGA-MV-A51V-01 1 156213682 156213682 C G PAQR6 Silent p.L342L 0.06 TCGA-MV-A51V-01 1 156268883 156268883 T C VHLL Missense_Mutation p.E33G 0.07 deleterious(0.04) benign(0.256) TCGA-MV-A51V-01 1 156316657 156316657 G T TSACC Nonsense_Mutation p.E88* 0.07 TCGA-MV-A51V-01 1 156444934 156444934 G C MEF2D Silent p.L324L 0.12 TCGA-MV-A51V-01 1 156513983 156513983 C T IQGAP3 Silent p.R807R 0.14 TCGA-MV-A51V-01 1 156721072 156721072 C G HDGF Intron 0.64 TCGA-MV-A51V-01 1 156913798 156913798 G A ARHGEF11 Missense_Mutation p.S1055F 0.10 deleterious(0) possibly_damaging(0.5) TCGA-MV-A51V-01 1 158063454 158063454 G C KIRREL Missense_Mutation p.E541Q 0.25 tolerated(0.27) probably_damaging(0.962) TCGA-MV-A51V-01 1 15888676 15888676 G T DNAJC16 Missense_Mutation p.L398F 0.07 tolerated(1) benign(0) TCGA-MV-A51V-01 1 159036113 159036113 G C AIM2 Missense_Mutation p.Q135E 0.12 tolerated(0.18) benign(0.066) TCGA-MV-A51V-01 1 159505005 159505005 T A OR10J5 Missense_Mutation p.S265C 0.15 tolerated(0.16) possibly_damaging(0.838) TCGA-MV-A51V-01 1 15960017 15960017 C G DDI2 Missense_Mutation p.P197A 0.09 deleterious(0.02) benign(0.065) TCGA-MV-A51V-01 1 159804919 159804919 G C C1orf204 3'UTR 0.09 TCGA-MV-A51V-01 1 159923159 159923159 G C SLAMF9 Missense_Mutation p.Q111E 0.09 tolerated(0.13) benign(0.256) TCGA-MV-A51V-01 1 160151573 160151573 C T ATP1A4 Missense_Mutation p.R946C 0.07 deleterious(0) probably_damaging(0.924) TCGA-MV-A51V-01 1 160259866 160259866 G T COPA 3'UTR 0.08 TCGA-MV-A51V-01 1 160783521 160783521 G C LY9 Missense_Mutation p.E184Q 0.11 tolerated(0.17) possibly_damaging(0.893) TCGA-MV-A51V-01 1 161043042 161043042 G C PVRL4 Silent p.L427L 0.08 TCGA-MV-A51V-01 1 161094233 161094233 C T DEDD Missense_Mutation p.R7Q 0.60 tolerated(0.19) benign(0) TCGA-MV-A51V-01 1 161494743 161494743 G C HSPA6 Missense_Mutation p.E99Q 0.10 tolerated_low_confidence(0.06) benign(0.003) TCGA-MV-A51V-01 1 165173089 165173089 G C LMX1A 3'UTR 0.13 TCGA-MV-A51V-01 1 1653101 1653101 C G CDK11A Missense_Mutation p.R54T 0.12 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-MV-A51V-01 1 167798585 167798585 G C ADCY10 Missense_Mutation p.L1224V 0.11 tolerated(0.3) benign(0.001) TCGA-MV-A51V-01 1 167823684 167823684 C G ADCY10 Missense_Mutation p.E739Q 0.06 tolerated(0.12) possibly_damaging(0.893) TCGA-MV-A51V-01 1 168168160 168168160 G T TIPRL Missense_Mutation p.D206Y 0.21 deleterious(0.01) possibly_damaging(0.779) TCGA-MV-A51V-01 1 168204411 168204411 C G SFT2D2 Missense_Mutation p.I103M 0.06 deleterious(0.02) benign(0.367) TCGA-MV-A51V-01 1 169511409 169511409 G C F5 Missense_Mutation p.I973M 0.05 deleterious(0.01) possibly_damaging(0.505) TCGA-MV-A51V-01 1 169511529 169511529 G T F5 Silent p.L933L 0.06 TCGA-MV-A51V-01 1 169511537 169511537 G C F5 Missense_Mutation p.L931V 0.06 deleterious(0.02) possibly_damaging(0.886) TCGA-MV-A51V-01 1 169822892 169822892 C T SCYL3 Missense_Mutation p.E731K 0.08 deleterious(0.03) unknown(0) TCGA-MV-A51V-01 1 170695487 170695487 C T PRRX1 Missense_Mutation p.R182C 0.08 deleterious(0.02) probably_damaging(0.982) TCGA-MV-A51V-01 1 171510558 171510558 G T PRRC2C Missense_Mutation p.R1316I 0.08 unknown(0) TCGA-MV-A51V-01 1 171557607 171557607 G T PRRC2C Missense_Mutation p.R2719I 0.15 probably_damaging(0.996) TCGA-MV-A51V-01 1 172431366 172431366 G C C1orf105 Missense_Mutation p.E108Q 0.19 tolerated(0.29) possibly_damaging(0.607) TCGA-MV-A51V-01 1 172560175 172560175 G T SUCO Silent p.V959V 0.18 TCGA-MV-A51V-01 1 173454617 173454617 G A PRDX6 Missense_Mutation p.E124K 0.06 tolerated(1) benign(0.001) TCGA-MV-A51V-01 1 173930270 173930270 G C RC3H1 Missense_Mutation p.S772C 0.08 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 1 1756890 1756890 C G GNB1 Translation_Start_Site p.M1? 0.13 deleterious(0.01) benign(0.094) TCGA-MV-A51V-01 1 176851992 176851992 C G ASTN1 Intron 0.12 TCGA-MV-A51V-01 1 17735625 17735625 C G RCC2 Missense_Mutation p.K510N 0.06 deleterious(0.02) benign(0.198) TCGA-MV-A51V-01 1 180163433 180163433 G C QSOX1 Missense_Mutation p.Q458H 0.21 tolerated(0.05) possibly_damaging(0.768) TCGA-MV-A51V-01 1 182353731 182353731 C A GLUL Missense_Mutation p.D311Y 0.18 deleterious(0) possibly_damaging(0.597) TCGA-MV-A51V-01 1 182554672 182554672 C G RNASEL Missense_Mutation p.E424Q 0.08 deleterious(0.04) probably_damaging(0.936) TCGA-MV-A51V-01 1 182850414 182850414 C G DHX9 Missense_Mutation p.I880M 0.15 tolerated(1) benign(0.005) TCGA-MV-A51V-01 1 183506339 183506339 C G SMG7 Nonsense_Mutation p.S408* 0.50 TCGA-MV-A51V-01 1 186008022 186008022 C G HMCN1 Missense_Mutation p.N1971K 0.18 probably_damaging(0.996) TCGA-MV-A51V-01 1 186121955 186121955 G A HMCN1 Silent p.V4990V 0.29 TCGA-MV-A51V-01 1 19585255 19585255 G A MRTO4 Silent p.Q217Q 0.10 TCGA-MV-A51V-01 1 1961437 1961437 G T GABRD Missense_Mutation p.A359S 0.08 tolerated(0.76) benign(0.321) TCGA-MV-A51V-01 1 197071346 197071346 G C ASPM Missense_Mutation p.F2345L 0.12 tolerated(0.38) possibly_damaging(0.868) TCGA-MV-A51V-01 1 197115342 197115342 C G ASPM Missense_Mutation p.E76Q 0.16 tolerated(0.15) benign(0.073) TCGA-MV-A51V-01 1 19775337 19775337 T C CAPZB Intron 0.29 TCGA-MV-A51V-01 1 19810691 19810691 G C CAPZB Intron 0.25 TCGA-MV-A51V-01 1 200613388 200613388 C A DDX59 Missense_Mutation p.Q618H 0.36 tolerated_low_confidence(0.08) benign(0.01) TCGA-MV-A51V-01 1 20097875 20097875 C T TMCO4 Missense_Mutation p.E94K 0.16 deleterious(0.02) benign(0.015) TCGA-MV-A51V-01 1 201184746 201184746 G T IGFN1 Silent p.V3025V 0.12 TCGA-MV-A51V-01 1 201755642 201755642 G A NAV1 Missense_Mutation p.E978K 0.33 deleterious(0.04) benign(0.046) TCGA-MV-A51V-01 1 202400648 202400648 C T PPP1R12B Nonsense_Mutation p.Q348* 0.27 TCGA-MV-A51V-01 1 202403820 202403820 C T PPP1R12B Missense_Mutation p.S393F 0.27 deleterious(0.01) possibly_damaging(0.534) TCGA-MV-A51V-01 1 203274702 203274702 G A BTG2 5'UTR 0.29 TCGA-MV-A51V-01 1 20412623 20412623 G C PLA2G5 Missense_Mutation p.E30Q 0.21 tolerated(0.32) possibly_damaging(0.505) TCGA-MV-A51V-01 1 205069320 205069320 C G RBBP5 Missense_Mutation p.E238Q 0.08 tolerated(0.15) benign(0.183) TCGA-MV-A51V-01 1 210411400 210411400 A T SERTAD4 Missense_Mutation p.D32V 0.16 deleterious(0.01) possibly_damaging(0.499) TCGA-MV-A51V-01 1 21154107 21154107 C T EIF4G3 Intron 0.12 TCGA-MV-A51V-01 1 213181770 213181770 C G ANGEL2 Missense_Mutation p.D142H 0.16 tolerated(0.29) benign(0) TCGA-MV-A51V-01 1 215844548 215844548 C G USH2A Missense_Mutation p.L4633F 0.16 benign(0.275) TCGA-MV-A51V-01 1 22206966 22206966 C G HSPG2 Missense_Mutation p.Q695H 0.20 possibly_damaging(0.853) TCGA-MV-A51V-01 1 222827622 222827622 G A MIA3 Silent p.Q1453Q 0.16 TCGA-MV-A51V-01 1 223971951 223971951 G C TP53BP2 Missense_Mutation p.Q1077E 0.20 tolerated(0.17) benign(0.008) TCGA-MV-A51V-01 1 223971979 223971979 G A TP53BP2 Silent p.V1067V 0.23 TCGA-MV-A51V-01 1 225591140 225591140 G C LBR Missense_Mutation p.F571L 0.17 deleterious(0.01) possibly_damaging(0.731) TCGA-MV-A51V-01 1 226595704 226595704 C T PARP1 5'UTR 0.37 TCGA-MV-A51V-01 1 227946866 227946866 C G SNAP47 Missense_Mutation p.S268C 0.25 deleterious(0.04) benign(0.103) TCGA-MV-A51V-01 1 228285741 228285741 C G ARF1 3'UTR 0.16 TCGA-MV-A51V-01 1 228480269 228480269 G C OBSCN Missense_Mutation p.R3979T 0.17 benign(0) TCGA-MV-A51V-01 1 229567793 229567793 G T ACTA1 Silent p.I252I 0.26 TCGA-MV-A51V-01 1 229613468 229613468 G C NUP133 Silent p.L544L 0.39 TCGA-MV-A51V-01 1 231057185 231057185 C G TTC13 Missense_Mutation p.R627T 0.61 deleterious(0.04) possibly_damaging(0.87) TCGA-MV-A51V-01 1 231060699 231060699 C G TTC13 Missense_Mutation p.E537Q 0.07 deleterious(0.01) probably_damaging(0.985) TCGA-MV-A51V-01 1 231377135 231377135 C A GNPAT Missense_Mutation p.S4Y 0.06 deleterious_low_confidence(0.02) unknown(0) TCGA-MV-A51V-01 1 231502185 231502185 G A EGLN1 Missense_Mutation p.S418L 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.715) TCGA-MV-A51V-01 1 232941958 232941958 G A MAP10 Missense_Mutation p.E397K 0.22 tolerated(0.63) benign(0.008) TCGA-MV-A51V-01 1 235616409 235616409 C A B3GALNT2 Missense_Mutation p.R454I 0.22 deleterious(0) possibly_damaging(0.472) TCGA-MV-A51V-01 1 236341744 236341744 C G GPR137B Missense_Mutation p.I165M 0.10 tolerated(0.13) benign(0.09) TCGA-MV-A51V-01 1 236714217 236714217 G C HEATR1 Silent p.L2140L 0.09 TCGA-MV-A51V-01 1 24483912 24483912 G C IFNLR1 Missense_Mutation p.S424C 0.12 deleterious(0) benign(0.123) TCGA-MV-A51V-01 1 24483972 24483972 G C IFNLR1 Missense_Mutation p.S404C 0.09 deleterious(0.01) benign(0.188) TCGA-MV-A51V-01 1 24645917 24645917 C G GRHL3 5'UTR 0.11 TCGA-MV-A51V-01 1 246890254 246890254 C T SCCPDH Missense_Mutation p.S84L 0.11 deleterious(0) probably_damaging(0.995) TCGA-MV-A51V-01 1 246921582 246921582 C T SCCPDH Nonsense_Mutation p.Q207* 0.08 TCGA-MV-A51V-01 1 247150544 247150544 G C ZNF695 Missense_Mutation p.Q425E 0.37 tolerated(0.9) benign(0.023) TCGA-MV-A51V-01 1 247592974 247592974 C A NLRP3 Silent p.L748L 0.10 TCGA-MV-A51V-01 1 248436697 248436697 C G OR2T33 Silent p.L140L 0.15 TCGA-MV-A51V-01 1 24998057 24998057 G C SRRM1 Missense_Mutation p.E861Q 0.12 unknown(0) TCGA-MV-A51V-01 1 26609046 26609046 G A UBXN11 Missense_Mutation p.S436F 0.13 deleterious(0.05) benign(0.332) TCGA-MV-A51V-01 1 26881119 26881119 G A RPS6KA1 Missense_Mutation p.E225K 0.07 deleterious(0.03) benign(0.322) TCGA-MV-A51V-01 1 27057811 27057811 C T ARID1A Nonsense_Mutation p.Q507* 0.54 TCGA-MV-A51V-01 1 27278244 27278244 G A C1orf172 Missense_Mutation p.P210S 0.09 tolerated(0.17) benign(0.021) TCGA-MV-A51V-01 1 27338941 27338941 C A FAM46B Missense_Mutation p.G74V 0.14 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 1 27876122 27876122 G C AHDC1 Silent p.L835L 0.17 TCGA-MV-A51V-01 1 29069442 29069442 C T YTHDF2 Silent p.I220I 0.30 TCGA-MV-A51V-01 1 29069986 29069986 G T YTHDF2 Missense_Mutation p.D402Y 0.10 deleterious(0) probably_damaging(0.962) TCGA-MV-A51V-01 1 32678173 32678173 G C DCDC2B Missense_Mutation p.E204Q 0.10 tolerated(0.06) possibly_damaging(0.478) TCGA-MV-A51V-01 1 32828224 32828224 C G TSSK3 5'UTR 0.31 TCGA-MV-A51V-01 1 33237908 33237908 G T KIAA1522 Missense_Mutation p.R1043L 0.09 tolerated_low_confidence(0.09) probably_damaging(0.961) TCGA-MV-A51V-01 1 33329821 33329821 C T FNDC5 3'UTR 0.11 TCGA-MV-A51V-01 1 33329838 33329838 C G FNDC5 3'UTR 0.12 TCGA-MV-A51V-01 1 33330109 33330109 C G FNDC5 Intron 0.20 TCGA-MV-A51V-01 1 3395040 3395040 G C ARHGEF16 Missense_Mutation p.E560Q 0.09 tolerated(0.29) benign(0.052) TCGA-MV-A51V-01 1 35827388 35827388 C G ZMYM4 Missense_Mutation p.Q280E 0.09 tolerated(1) benign(0.002) TCGA-MV-A51V-01 1 36755344 36755344 C G THRAP3 Missense_Mutation p.S575C 0.12 tolerated(0.08) probably_damaging(0.992) TCGA-MV-A51V-01 1 3768905 3768905 C T CEP104 Missense_Mutation p.E23K 0.13 deleterious(0.03) benign(0.206) TCGA-MV-A51V-01 1 39384793 39384793 C G RHBDL2 Missense_Mutation p.R31T 0.05 tolerated(0.23) benign(0.003) TCGA-MV-A51V-01 1 39469763 39469763 C G AKIRIN1 3'UTR 0.14 TCGA-MV-A51V-01 1 39816507 39816507 C G MACF1 Silent p.V1610V 0.06 TCGA-MV-A51V-01 1 39823395 39823395 G C MACF1 Missense_Mutation p.E1863Q 0.17 probably_damaging(0.959) TCGA-MV-A51V-01 1 39876807 39876807 C T KIAA0754 Silent p.L154L 0.11 TCGA-MV-A51V-01 1 39877409 39877409 C G KIAA0754 Missense_Mutation p.S355C 0.13 benign(0.423) TCGA-MV-A51V-01 1 39877655 39877655 A - KIAA0754 Frame_Shift_Del p.V439Cfs*30 0.08 TCGA-MV-A51V-01 1 39877931 39877931 C A KIAA0754 Nonsense_Mutation p.S529* 0.12 TCGA-MV-A51V-01 1 40703682 40703682 C G RLF Nonsense_Mutation p.S1103* 0.19 TCGA-MV-A51V-01 1 40758248 40758248 C A ZMPSTE24 Missense_Mutation p.F445L 0.05 deleterious(0.04) benign(0.161) TCGA-MV-A51V-01 1 41976579 41976579 G A HIVEP3 Missense_Mutation p.S2255L 0.06 probably_damaging(0.994) TCGA-MV-A51V-01 1 43805639 43805639 C G MPL Nonsense_Mutation p.S232* 0.18 TCGA-MV-A51V-01 1 43892726 43892726 G A SZT2 Splice_Site p.X1047_splice 0.04 TCGA-MV-A51V-01 1 43898459 43898459 C G SZT2 Nonsense_Mutation p.S1807* 0.08 TCGA-MV-A51V-01 1 44083220 44083220 C T PTPRF Silent p.V1392V 0.15 TCGA-MV-A51V-01 1 45266520 45266520 C T PLK3 Silent p.F73F 0.19 TCGA-MV-A51V-01 1 45486396 45486396 G C ZSWIM5 Silent p.L838L 0.05 TCGA-MV-A51V-01 1 46726549 46726549 G C RAD54L Missense_Mutation p.E210Q 0.07 deleterious(0.02) benign(0.437) TCGA-MV-A51V-01 1 47746239 47746239 C G STIL Missense_Mutation p.D631H 0.21 deleterious(0.01) possibly_damaging(0.896) TCGA-MV-A51V-01 1 47746779 47746779 C T STIL Missense_Mutation p.E451K 0.20 tolerated(0.71) benign(0.073) TCGA-MV-A51V-01 1 52255078 52255078 C T NRD1 Missense_Mutation p.E1164K 0.09 tolerated(0.09) possibly_damaging(0.468) TCGA-MV-A51V-01 1 53676886 53676886 G C CPT2 Missense_Mutation p.E514Q 0.12 tolerated(0.2) benign(0.011) TCGA-MV-A51V-01 1 55188448 55188448 G C TTC4 Missense_Mutation p.M190I 0.08 tolerated(0.24) benign(0.001) TCGA-MV-A51V-01 1 55223794 55223794 G C PARS2 Missense_Mutation p.I347M 0.09 deleterious(0) probably_damaging(0.952) TCGA-MV-A51V-01 1 55224681 55224681 G A PARS2 Missense_Mutation p.R52W 0.07 deleterious(0.04) benign(0.086) TCGA-MV-A51V-01 1 57258119 57258119 C G C1orf168 Missense_Mutation p.E123Q 0.06 deleterious(0.04) possibly_damaging(0.526) TCGA-MV-A51V-01 1 58999681 58999681 G A OMA1 Missense_Mutation p.H319Y 0.07 deleterious(0) possibly_damaging(0.88) TCGA-MV-A51V-01 1 60228255 60228255 G C FGGY Nonstop_Mutation p.*576Sext*28 0.35 TCGA-MV-A51V-01 1 62228803 62228803 C G INADL Missense_Mutation p.F47L 0.11 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 1 62677114 62677114 G A L1TD1 3'UTR 0.08 TCGA-MV-A51V-01 1 6314113 6314113 C T GPR153 Missense_Mutation p.D151N 0.33 tolerated(0.25) probably_damaging(1) TCGA-MV-A51V-01 1 6354942 6354942 G A ACOT7 Missense_Mutation p.H281Y 0.28 tolerated(0.15) benign(0.056) TCGA-MV-A51V-01 1 64114204 64114204 T G PGM1 Silent p.R405R 0.15 TCGA-MV-A51V-01 1 6586791 6586791 C G NOL9 Missense_Mutation p.A642P 0.17 tolerated(0.07) possibly_damaging(0.906) TCGA-MV-A51V-01 1 6614476 6614476 G C NOL9 Silent p.L29L 0.17 TCGA-MV-A51V-01 1 67288118 67288118 G A WDR78 Silent p.L808L 0.30 TCGA-MV-A51V-01 1 67450437 67450437 G C MIER1 Missense_Mutation p.E518Q 0.30 tolerated(0.11) benign(0.193) TCGA-MV-A51V-01 1 74670981 74670981 C G FPGT Nonsense_Mutation p.S417* 0.11 TCGA-MV-A51V-01 1 75065509 75065509 A G C1orf173 Silent p.D532D 0.10 TCGA-MV-A51V-01 1 75199047 75199047 G A TYW3 Missense_Mutation p.R40Q 0.34 tolerated(0.59) benign(0.004) TCGA-MV-A51V-01 1 78162988 78162988 C G USP33 3'UTR 0.11 TCGA-MV-A51V-01 1 78194265 78194265 C T USP33 Missense_Mutation p.D315N 0.19 deleterious(0.04) probably_damaging(0.967) TCGA-MV-A51V-01 1 8419925 8419925 C G RERE Missense_Mutation p.E1173Q 0.31 unknown(0) TCGA-MV-A51V-01 1 84403601 84403601 G C TTLL7 Missense_Mutation p.I274M 0.12 deleterious(0) probably_damaging(0.953) TCGA-MV-A51V-01 1 85020762 85020762 C G CTBS Missense_Mutation p.D360H 0.18 deleterious(0) probably_damaging(0.945) TCGA-MV-A51V-01 1 85498420 85498420 G A MCOLN3 Missense_Mutation p.R231C 0.07 tolerated(0.18) possibly_damaging(0.836) TCGA-MV-A51V-01 1 85824477 85824477 C A DDAH1 Missense_Mutation p.M119I 0.13 tolerated(0.4) benign(0.066) TCGA-MV-A51V-01 1 8616627 8616627 G C RERE Missense_Mutation p.S211C 0.06 probably_damaging(0.979) TCGA-MV-A51V-01 1 87380614 87380614 C G HS2ST1 5'UTR 0.46 TCGA-MV-A51V-01 1 89844165 89844165 G C GBP6 Silent p.L206L 0.10 TCGA-MV-A51V-01 1 92182139 92182139 G A TGFBR3 Missense_Mutation p.P565S 0.12 tolerated(0.22) benign(0.034) TCGA-MV-A51V-01 1 92946170 92946170 G A GFI1 Silent p.I258I 0.40 TCGA-MV-A51V-01 1 93646273 93646273 C T CCDC18 5'Flank 0.11 TCGA-MV-A51V-01 1 9415874 9415874 C T SPSB1 5'UTR 0.13 TCGA-MV-A51V-01 1 9991955 9991955 C G LZIC Missense_Mutation p.D170H 0.25 deleterious(0.01) benign(0.077) TCGA-MV-A51V-01 20 18794913 18794913 G C SCP2D1 Missense_Mutation p.D152H 0.09 deleterious(0) benign(0.04) TCGA-MV-A51V-01 20 20610075 20610075 C T RALGAPA2 Missense_Mutation p.E389K 0.17 deleterious(0.02) benign(0.028) TCGA-MV-A51V-01 20 23064978 23064978 C G CD93 Missense_Mutation p.E618Q 0.25 tolerated(0.09) possibly_damaging(0.861) TCGA-MV-A51V-01 20 25257929 25257929 G C PYGB Missense_Mutation p.E274D 0.07 deleterious(0) probably_damaging(0.993) TCGA-MV-A51V-01 20 25443172 25443172 C G NINL Missense_Mutation p.Q1143H 0.17 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 20 30409506 30409506 C T MYLK2 Silent p.L246L 0.06 TCGA-MV-A51V-01 20 31630618 31630618 C T BPIFB6 Intron 0.10 TCGA-MV-A51V-01 20 31631105 31631105 C T BPIFB6 Nonsense_Mutation p.Q421* 0.15 TCGA-MV-A51V-01 20 31647746 31647746 C T BPIFB3 Missense_Mutation p.R146W 0.09 deleterious(0) probably_damaging(0.984) TCGA-MV-A51V-01 20 3180686 3180686 C T DDRGK1 Silent p.K157K 0.20 TCGA-MV-A51V-01 20 32026804 32026804 G C SNTA1 Silent p.L113L 0.11 TCGA-MV-A51V-01 20 32078103 32078103 C G CBFA2T2 Missense_Mutation p.F10L 0.11 tolerated_low_confidence(0.11) benign(0.003) TCGA-MV-A51V-01 20 32378955 32378955 C G ZNF341 Missense_Mutation p.L726V 0.15 tolerated(0.36) benign(0.108) TCGA-MV-A51V-01 20 3298957 3298957 G A C20orf194 Nonsense_Mutation p.Q483* 0.10 TCGA-MV-A51V-01 20 33568428 33568428 C T MYH7B Silent p.L172L 0.11 TCGA-MV-A51V-01 20 34785870 34785870 C T EPB41L1 Silent p.L525L 0.07 TCGA-MV-A51V-01 20 3730747 3730747 G C HSPA12B Missense_Mutation p.E392Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 20 39796536 39796536 C G PLCG1 Missense_Mutation p.F782L 0.12 tolerated(0.42) benign(0.02) TCGA-MV-A51V-01 20 40084524 40084524 A G CHD6 Silent p.C975C 0.08 TCGA-MV-A51V-01 20 43851731 43851731 G C SEMG2 Missense_Mutation p.Q486H 0.16 deleterious(0.02) unknown(0) TCGA-MV-A51V-01 20 44404215 44404215 G C WFDC3 Missense_Mutation p.L174V 0.08 tolerated(0.2) probably_damaging(0.998) TCGA-MV-A51V-01 20 44418618 44418618 G A WFDC3 5'UTR 0.31 TCGA-MV-A51V-01 20 44665388 44665388 C G SLC12A5 Silent p.L168L 0.22 TCGA-MV-A51V-01 20 47317392 47317392 G A PREX1 Silent p.L272L 0.14 TCGA-MV-A51V-01 20 4771140 4771140 C G RASSF2 Missense_Mutation p.R165T 0.10 deleterious(0.05) benign(0.013) TCGA-MV-A51V-01 20 5096157 5096157 A C PCNA Missense_Mutation p.F215C 0.09 deleterious(0) probably_damaging(0.948) TCGA-MV-A51V-01 20 5154173 5154173 C T CDS2 Missense_Mutation p.S21L 0.11 tolerated(0.12) benign(0.001) TCGA-MV-A51V-01 20 52198583 52198583 C T ZNF217 Silent p.S261S 0.13 TCGA-MV-A51V-01 20 52198765 52198765 C G ZNF217 Missense_Mutation p.E201Q 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-MV-A51V-01 20 53260054 53260054 C T DOK5 Missense_Mutation p.R265C 0.11 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-MV-A51V-01 20 56191454 56191454 C T ZBP1 Silent p.V35V 0.24 TCGA-MV-A51V-01 20 57598818 57598818 G C TUBB1 Silent p.L112L 0.19 TCGA-MV-A51V-01 20 58490578 58490578 C G SYCP2 Missense_Mutation p.D181H 0.13 deleterious(0) probably_damaging(0.972) TCGA-MV-A51V-01 20 5905694 5905694 G A CHGB Silent p.%3D 0.19 TCGA-MV-A51V-01 20 60794805 60794805 G T HRH3 Silent p.L74L 0.14 TCGA-MV-A51V-01 20 60991273 60991273 C T RBBP8NL Silent p.L111L 0.33 TCGA-MV-A51V-01 20 61143920 61143920 C G C20orf166 5'Flank 0.13 TCGA-MV-A51V-01 20 61488787 61488787 G C TCFL5 Missense_Mutation p.Q400E 0.18 tolerated(0.1) probably_damaging(0.966) TCGA-MV-A51V-01 20 62329731 62329731 G A TNFRSF6B Missense_Mutation p.E240K 0.11 tolerated(0.89) benign(0.023) TCGA-MV-A51V-01 20 744420 744420 G C SLC52A3 Missense_Mutation p.I265M 0.14 tolerated(0.24) benign(0.445) TCGA-MV-A51V-01 20 8713961 8713961 G A PLCB1 Missense_Mutation p.M655I 0.07 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 21 34635334 34635334 G C IFNAR2 Missense_Mutation p.L359F 0.27 tolerated(0.71) benign(0) TCGA-MV-A51V-01 21 34924456 34924456 A G SON Silent p.A973A 0.11 TCGA-MV-A51V-01 21 38862514 38862514 C G DYRK1A Silent p.L234L 0.19 TCGA-MV-A51V-01 21 38997769 38997769 G C KCNJ6 Missense_Mutation p.R322G 0.11 deleterious(0) probably_damaging(0.986) TCGA-MV-A51V-01 21 42811651 42811651 G C MX1 Missense_Mutation p.G156A 0.08 tolerated(0.19) benign(0.443) TCGA-MV-A51V-01 21 43412524 43412524 G C ZBTB21 Missense_Mutation p.L561V 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-MV-A51V-01 21 43522337 43522337 C T UMODL1 Silent p.L416L 0.16 TCGA-MV-A51V-01 21 45547982 45547982 C T PWP2 Silent p.N770N 0.10 TCGA-MV-A51V-01 21 46074353 46074353 C T KRTAP12-4 Missense_Mutation p.C60Y 0.08 deleterious(0.01) possibly_damaging(0.588) TCGA-MV-A51V-01 21 46233984 46233984 C T SUMO3 Silent p.L19L 0.05 TCGA-MV-A51V-01 21 46935620 46935620 C G SLC19A1 Silent p.L576L 0.19 TCGA-MV-A51V-01 21 47611044 47611044 C T LSS Missense_Mutation p.E725K 0.12 tolerated(0.23) benign(0.001) TCGA-MV-A51V-01 21 47685836 47685836 C G MCM3AP Intron 0.17 TCGA-MV-A51V-01 21 47738075 47738075 C T C21orf58 Missense_Mutation p.E54K 0.17 tolerated_low_confidence(0.45) possibly_damaging(0.486) TCGA-MV-A51V-01 22 18072957 18072957 C G SLC25A18 Silent p.V301V 0.06 TCGA-MV-A51V-01 22 20302993 20302993 C G DGCR6L Missense_Mutation p.E127Q 0.24 tolerated(0.07) probably_damaging(0.996) TCGA-MV-A51V-01 22 22287815 22287815 C G PPM1F Missense_Mutation p.R232T 0.11 tolerated(0.11) benign(0.333) TCGA-MV-A51V-01 22 23165548 23165548 C G IGLV2-8 Missense_Mutation p.S40C 0.16 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-MV-A51V-01 22 24837358 24837358 C T ADORA2A Silent p.L380L 0.37 TCGA-MV-A51V-01 22 25301091 25301091 G C SGSM1 Missense_Mutation p.E974Q 0.21 deleterious(0) possibly_damaging(0.704) TCGA-MV-A51V-01 22 26000384 26000384 G A ADRBK2 Missense_Mutation p.E52K 0.28 deleterious(0.02) possibly_damaging(0.844) TCGA-MV-A51V-01 22 30374958 30374958 G C MTMR3 Missense_Mutation p.E43Q 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-MV-A51V-01 22 30888458 30888458 C G SEC14L4 Intron 0.24 TCGA-MV-A51V-01 22 30951097 30951097 G C GAL3ST1 Missense_Mutation p.S372C 0.09 deleterious(0.01) probably_damaging(0.954) TCGA-MV-A51V-01 22 31010333 31010333 C G TCN2 Intron 0.11 TCGA-MV-A51V-01 22 31583119 31583119 G C RNF185 Missense_Mutation p.E13D 0.13 tolerated(0.34) unknown(0) TCGA-MV-A51V-01 22 32009819 32009819 G A SFI1 Missense_Mutation p.E992K 0.33 deleterious(0.04) benign(0.045) TCGA-MV-A51V-01 22 32480959 32480959 C G SLC5A1 Missense_Mutation p.L320V 0.08 deleterious(0) possibly_damaging(0.79) TCGA-MV-A51V-01 22 32480979 32480979 C T SLC5A1 Silent p.F326F 0.09 TCGA-MV-A51V-01 22 32586929 32586929 C G RFPL2 Missense_Mutation p.E323Q 0.22 tolerated(0.3) benign(0.054) TCGA-MV-A51V-01 22 36623422 36623422 C G APOL2 3'UTR 0.09 TCGA-MV-A51V-01 22 36714329 36714329 C T MYH9 Missense_Mutation p.D384N 0.15 benign(0.128) TCGA-MV-A51V-01 22 36716266 36716266 C T MYH9 Missense_Mutation p.M337I 0.21 benign(0.001) TCGA-MV-A51V-01 22 37627332 37627332 C T RAC2 Silent p.L129L 0.12 TCGA-MV-A51V-01 22 39112893 39112893 G A GTPBP1 Missense_Mutation p.C241Y 0.15 tolerated(0.13) probably_damaging(0.928) TCGA-MV-A51V-01 22 39413942 39413942 C A APOBEC3C Missense_Mutation p.L116I 0.31 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 22 40762537 40762537 G C ADSL 3'UTR 0.39 TCGA-MV-A51V-01 22 41613121 41613121 C T L3MBTL2 Intron 0.28 TCGA-MV-A51V-01 22 41657447 41657447 C T RANGAP1 Intron 0.08 TCGA-MV-A51V-01 22 41973381 41973381 G C PMM1 Missense_Mutation p.Q244E 0.46 tolerated(1) benign(0.001) TCGA-MV-A51V-01 22 45599773 45599773 G T KIAA0930 Missense_Mutation p.Q209K 0.28 tolerated(0.35) benign(0.234) TCGA-MV-A51V-01 22 50636312 50636312 G C TRABD Missense_Mutation p.M244I 0.10 deleterious(0) possibly_damaging(0.842) TCGA-MV-A51V-01 22 50658103 50658103 C G TUBGCP6 Missense_Mutation p.E1429Q 0.07 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 22 51178298 51178298 C T ACR Missense_Mutation p.S153L 0.25 tolerated(0.3) benign(0.022) TCGA-MV-A51V-01 2 101869869 101869869 G C CNOT11 Missense_Mutation p.S148T 0.20 tolerated(0.09) benign(0.007) TCGA-MV-A51V-01 2 10262911 10262911 C A RRM2 Missense_Mutation p.R56S 0.21 tolerated_low_confidence(0.16) benign(0.002) TCGA-MV-A51V-01 2 10263956 10263956 G A RRM2 Missense_Mutation p.D198N 0.35 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-MV-A51V-01 2 108496470 108496470 G C RGPD4 Missense_Mutation p.Q1657H 0.41 deleterious_low_confidence(0.03) benign(0.19) TCGA-MV-A51V-01 2 109374920 109374920 C T RANBP2 Missense_Mutation p.R840C 0.08 deleterious(0) benign(0.255) TCGA-MV-A51V-01 2 111413490 111413490 C T BUB1 Missense_Mutation p.E568K 0.14 deleterious(0.04) possibly_damaging(0.773) TCGA-MV-A51V-01 2 112588952 112588952 G A ANAPC1 Nonsense_Mutation p.Q846* 0.20 TCGA-MV-A51V-01 2 112589009 112589009 G A ANAPC1 Nonsense_Mutation p.Q827* 0.11 TCGA-MV-A51V-01 2 113088812 113088812 G C ZC3H6 Missense_Mutation p.E773Q 0.17 deleterious(0.02) possibly_damaging(0.848) TCGA-MV-A51V-01 2 113330230 113330230 G A POLR1B Silent p.V722V 0.17 TCGA-MV-A51V-01 2 113993005 113993005 C G PAX8 Silent p.V351V 0.25 TCGA-MV-A51V-01 2 11800237 11800237 G A NTSR2 Silent p.V307V 0.19 TCGA-MV-A51V-01 2 121747564 121747564 G A GLI2 Silent p.P1358P 0.22 TCGA-MV-A51V-01 2 127825814 127825814 C T BIN1 Silent p.E179E 0.31 TCGA-MV-A51V-01 2 128747412 128747412 G C SAP130 Missense_Mutation p.I528M 0.14 tolerated_low_confidence(0.28) possibly_damaging(0.537) TCGA-MV-A51V-01 2 133541948 133541948 C T NCKAP5 Silent p.Q812Q 0.05 TCGA-MV-A51V-01 2 135712068 135712068 C T CCNT2 Silent p.L681L 0.10 TCGA-MV-A51V-01 2 135712173 135712173 C G CCNT2 Missense_Mutation p.F716L 0.23 tolerated(0.08) benign(0.004) TCGA-MV-A51V-01 2 136566392 136566392 C G LCT Missense_Mutation p.R1175S 0.16 deleterious(0) possibly_damaging(0.604) TCGA-MV-A51V-01 2 136616912 136616912 C G MCM6 Missense_Mutation p.E441Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-MV-A51V-01 2 138738993 138738993 G C HNMT Intron 0.12 TCGA-MV-A51V-01 2 144899575 144899575 G C GTDC1 Nonsense_Mutation p.S132* 0.11 TCGA-MV-A51V-01 2 152320267 152320267 G A RIF1 Silent p.Q1411Q 0.17 TCGA-MV-A51V-01 2 152320412 152320412 G C RIF1 Missense_Mutation p.D1460H 0.31 deleterious(0) possibly_damaging(0.897) TCGA-MV-A51V-01 2 152486108 152486108 C T NEB Missense_Mutation p.R3259Q 0.13 probably_damaging(0.999) TCGA-MV-A51V-01 2 160092588 160092588 G A WDSUB1 Silent p.L463L 0.19 TCGA-MV-A51V-01 2 160732032 160732032 C G LY75-CD302 Missense_Mutation p.E633Q 0.24 tolerated(0.16) probably_damaging(0.969) TCGA-MV-A51V-01 2 16082739 16082739 G C MYCN Missense_Mutation p.E185Q 0.21 deleterious(0.03) possibly_damaging(0.474) TCGA-MV-A51V-01 2 164466036 164466036 T C FIGN 3'UTR 0.35 TCGA-MV-A51V-01 2 165984179 165984179 C G SCN3A Missense_Mutation p.E1119Q 0.10 deleterious(0.03) possibly_damaging(0.659) TCGA-MV-A51V-01 2 168997164 168997164 C A STK39 Nonsense_Mutation p.E245* 0.25 TCGA-MV-A51V-01 2 170145611 170145611 C G LRP2 Missense_Mutation p.E323Q 0.13 benign(0.004) TCGA-MV-A51V-01 2 170428556 170428556 C G FASTKD1 5'UTR 0.19 TCGA-MV-A51V-01 2 170592592 170592592 C G KLHL23 Silent p.L356L 0.42 TCGA-MV-A51V-01 2 175979389 175979389 A C ATF2 Intron 0.11 TCGA-MV-A51V-01 2 177017631 177017631 G A HOXD4 Silent p.P243P 0.12 TCGA-MV-A51V-01 2 178936649 178936649 G T PDE11A Silent p.L172L 0.14 TCGA-MV-A51V-01 2 179343263 179343263 C T FKBP7 5'UTR 0.09 TCGA-MV-A51V-01 2 179343267 179343267 C T FKBP7 5'UTR 0.07 TCGA-MV-A51V-01 2 179422475 179422475 C T TTN Silent p.L29202L 0.16 TCGA-MV-A51V-01 2 179431214 179431214 C G TTN Missense_Mutation p.E26549Q 0.11 TCGA-MV-A51V-01 2 179590360 179590360 G A TTN Silent p.V6857V 0.26 TCGA-MV-A51V-01 2 179596062 179596062 G C TTN Missense_Mutation p.Q5811E 0.18 TCGA-MV-A51V-01 2 179598223 179598223 C T TTN Missense_Mutation p.R5266Q 0.38 TCGA-MV-A51V-01 2 183582959 183582959 G C DNAJC10 Missense_Mutation p.R49T 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-MV-A51V-01 2 183829484 183829484 A T NCKAP1 Missense_Mutation p.S567T 0.22 tolerated(0.48) benign(0.09) TCGA-MV-A51V-01 2 186672142 186672142 G A FSIP2 Missense_Mutation p.E6126K 0.12 benign(0.337) TCGA-MV-A51V-01 2 189867021 189867021 C T COL3A1 Intron 0.59 TCGA-MV-A51V-01 2 189867036 189867036 G A COL3A1 Missense_Mutation p.E802K 0.35 unknown(0) TCGA-MV-A51V-01 2 189907983 189907983 C T COL5A2 Missense_Mutation p.G1122E 0.36 unknown(0) TCGA-MV-A51V-01 2 191301211 191301211 C G MFSD6 Silent p.V152V 0.49 TCGA-MV-A51V-01 2 191301486 191301486 C G MFSD6 Nonsense_Mutation p.S244* 0.42 TCGA-MV-A51V-01 2 191301666 191301666 C A MFSD6 Missense_Mutation p.S304Y 0.34 deleterious(0) possibly_damaging(0.805) TCGA-MV-A51V-01 2 191302212 191302212 C A MFSD6 Nonsense_Mutation p.S486* 0.32 TCGA-MV-A51V-01 2 196849371 196849371 T C DNAH7 Silent p.E606E 0.09 TCGA-MV-A51V-01 2 198299750 198299750 A C SF3B1 5'UTR 0.20 TCGA-MV-A51V-01 2 198948700 198948700 C G PLCL1 Silent p.L153L 0.12 TCGA-MV-A51V-01 2 20130164 20130164 C T WDR35 Silent p.L1049L 0.18 TCGA-MV-A51V-01 2 201332062 201332062 C A SPATS2L Silent p.L299L 0.22 TCGA-MV-A51V-01 2 202272280 202272280 C A TRAK2 Silent p.V44V 0.09 TCGA-MV-A51V-01 2 202900975 202900975 G A FZD7 Silent p.L535L 0.06 TCGA-MV-A51V-01 2 203644279 203644279 C A ICA1L Missense_Mutation p.D476Y 0.26 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 2 203847103 203847103 G C CARF Silent p.R666R 0.36 TCGA-MV-A51V-01 2 203848337 203848337 C G CARF Missense_Mutation p.S723C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.896) TCGA-MV-A51V-01 2 204037541 204037541 A T NBEAL1 Silent p.V2067V 0.09 TCGA-MV-A51V-01 2 207572054 207572054 G C DYTN Missense_Mutation p.L90V 0.16 deleterious(0.02) probably_damaging(0.966) TCGA-MV-A51V-01 2 209116242 209116242 C T IDH1 Missense_Mutation p.E12K 0.27 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-MV-A51V-01 2 209219330 209219330 G C PIKFYVE Missense_Mutation p.E2048Q 0.18 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 2 21228078 21228078 C G APOB Missense_Mutation p.E3888Q 0.07 benign(0.091) TCGA-MV-A51V-01 2 214149337 214149337 C T SPAG16 Silent p.L44L 0.35 TCGA-MV-A51V-01 2 219118724 219118724 C G ARPC2 3'UTR 0.18 TCGA-MV-A51V-01 2 220026615 220026615 G C SLC23A3 3'UTR 0.19 TCGA-MV-A51V-01 2 220111532 220111532 C T STK16 Silent p.L80L 0.28 TCGA-MV-A51V-01 2 220342798 220342798 G A SPEG Silent p.R1666R 0.12 TCGA-MV-A51V-01 2 220405067 220405067 C T CHPF Missense_Mutation p.D456N 0.14 deleterious(0) probably_damaging(0.954) TCGA-MV-A51V-01 2 223795383 223795383 C G ACSL3 Missense_Mutation p.L529V 0.32 tolerated(0.35) benign(0.055) TCGA-MV-A51V-01 2 224462269 224462269 C G SCG2 Missense_Mutation p.D578H 0.09 deleterious(0.01) possibly_damaging(0.872) TCGA-MV-A51V-01 2 224463100 224463100 C G SCG2 Missense_Mutation p.D301H 0.09 deleterious(0) probably_damaging(0.962) TCGA-MV-A51V-01 2 228786249 228786249 C A DAW1 Missense_Mutation p.F395L 0.11 deleterious(0) probably_damaging(0.96) TCGA-MV-A51V-01 2 233745922 233745922 G T NGEF Missense_Mutation p.Q626K 0.26 tolerated(0.07) benign(0.301) TCGA-MV-A51V-01 2 234545662 234545662 C G UGT1A10 Missense_Mutation p.S165C 0.29 deleterious(0.02) probably_damaging(0.972) TCGA-MV-A51V-01 2 234905161 234905161 G A TRPM8 Splice_Site p.X1044_splice 0.30 TCGA-MV-A51V-01 2 236649651 236649651 C T AGAP1 Silent p.L119L 0.37 TCGA-MV-A51V-01 2 239147873 239147873 C T HES6 Silent p.A90A 0.33 TCGA-MV-A51V-01 2 239353221 239353221 C T ASB1 Missense_Mutation p.R245C 0.07 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 2 242046915 242046915 C G PASK Splice_Site p.X1230_splice 0.34 TCGA-MV-A51V-01 2 242072348 242072348 C G PASK Missense_Mutation p.Q468H 0.08 tolerated(0.09) possibly_damaging(0.896) TCGA-MV-A51V-01 2 242202290 242202290 C T HDLBP Missense_Mutation p.G96R 0.18 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 2 242203869 242203869 G C HDLBP Missense_Mutation p.I76M 0.32 deleterious(0.01) benign(0.028) TCGA-MV-A51V-01 2 242432839 242432839 G C FARP2 Missense_Mutation p.E1009D 0.23 deleterious(0.05) possibly_damaging(0.533) TCGA-MV-A51V-01 2 24930098 24930098 G C NCOA1 Missense_Mutation p.E587Q 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-MV-A51V-01 2 25965513 25965513 C T ASXL2 Silent p.V1231V 0.13 TCGA-MV-A51V-01 2 264987 264987 C A ACP1 Missense_Mutation p.S8Y 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-MV-A51V-01 2 26695437 26695437 C T OTOF Missense_Mutation p.E1272K 0.20 tolerated(0.13) benign(0.354) TCGA-MV-A51V-01 2 27016116 27016116 G T CENPA Missense_Mutation p.R131M 0.09 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 2 27565766 27565766 G C GTF3C2 Missense_Mutation p.Q166E 0.13 tolerated(1) benign(0) TCGA-MV-A51V-01 2 27664002 27664002 G A NRBP1 Silent p.L446L 0.09 TCGA-MV-A51V-01 2 27667281 27667281 C G IFT172 3'UTR 0.19 TCGA-MV-A51V-01 2 27706220 27706220 G A IFT172 Missense_Mutation p.S169F 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-MV-A51V-01 2 27746156 27746156 G A GCKR Silent p.L576L 0.47 TCGA-MV-A51V-01 2 27802621 27802621 C G C2orf16 Missense_Mutation p.S1061C 0.11 deleterious(0) probably_damaging(0.921) TCGA-MV-A51V-01 2 27805184 27805184 G A C2orf16 Missense_Mutation p.M1915I 0.18 tolerated_low_confidence(0.06) unknown(0) TCGA-MV-A51V-01 2 28268591 28268591 G C BRE Splice_Site p.X166_splice 0.23 TCGA-MV-A51V-01 2 29117667 29117667 G C WDR43 Missense_Mutation p.D35H 0.35 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 2 29397326 29397326 G C CLIP4 Intron 0.10 TCGA-MV-A51V-01 2 31595158 31595158 G C XDH Missense_Mutation p.P598A 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-MV-A51V-01 2 32738130 32738130 C A BIRC6 Missense_Mutation p.H3493N 0.08 probably_damaging(0.995) TCGA-MV-A51V-01 2 33811703 33811703 C T FAM98A Missense_Mutation p.E216K 0.20 tolerated(0.19) benign(0.395) TCGA-MV-A51V-01 2 39249828 39249828 C T SOS1 Missense_Mutation p.D581N 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-MV-A51V-01 2 43452198 43452198 C T ZFP36L2 Missense_Mutation p.E249K 0.10 tolerated(0.07) possibly_damaging(0.636) TCGA-MV-A51V-01 2 44040317 44040317 G C ABCG5 Missense_Mutation p.P632A 0.65 tolerated(0.08) probably_damaging(0.952) TCGA-MV-A51V-01 2 44174875 44174875 G C LRPPRC Missense_Mutation p.Q654E 0.14 tolerated(1) benign(0.002) TCGA-MV-A51V-01 2 44429085 44429085 G C PPM1B Missense_Mutation p.M249I 0.12 tolerated(0.13) possibly_damaging(0.865) TCGA-MV-A51V-01 2 44459467 44459467 C G PPM1B 3'Flank 0.08 TCGA-MV-A51V-01 2 46803241 46803241 C T RHOQ Silent p.L73L 0.52 TCGA-MV-A51V-01 2 50464025 50464025 C T NRXN1 Missense_Mutation p.D1190N 0.44 deleterious(0.03) probably_damaging(0.977) TCGA-MV-A51V-01 2 54148029 54148029 G T PSME4 Silent p.I753I 0.10 TCGA-MV-A51V-01 2 55433460 55433460 C A CLHC1 Missense_Mutation p.A318S 0.20 deleterious(0) possibly_damaging(0.794) TCGA-MV-A51V-01 2 55582845 55582845 G C CCDC88A Missense_Mutation p.L224V 0.16 tolerated(0.53) benign(0.061) TCGA-MV-A51V-01 2 60688970 60688970 G T BCL11A Silent p.P359P 0.06 TCGA-MV-A51V-01 2 60983561 60983561 G A PAPOLG 5'UTR 0.17 TCGA-MV-A51V-01 2 61571007 61571007 G C USP34 Missense_Mutation p.H815D 0.10 tolerated(0.09) benign(0.011) TCGA-MV-A51V-01 2 61575066 61575066 G A USP34 Nonsense_Mutation p.R742* 0.07 TCGA-MV-A51V-01 2 63053373 63053373 C G EHBP1 Missense_Mutation p.S155C 0.16 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 2 69590794 69590794 C T GFPT1 Missense_Mutation p.D78N 0.38 tolerated(0.65) benign(0.008) TCGA-MV-A51V-01 2 69703063 69703063 C G AAK1 Missense_Mutation p.E942Q 0.16 deleterious(0) probably_damaging(0.979) TCGA-MV-A51V-01 2 73161038 73161038 G A EMX1 Silent p.T276T 0.14 TCGA-MV-A51V-01 2 73491079 73491079 C T FBXO41 Missense_Mutation p.A637T 0.25 tolerated(0.25) benign(0.109) TCGA-MV-A51V-01 2 73777460 73777460 C T ALMS1 Missense_Mutation p.S3324L 0.14 benign(0.441) TCGA-MV-A51V-01 2 74688924 74688924 C T MOGS Silent p.L664L 0.07 TCGA-MV-A51V-01 2 84517982 84517982 G C FUNDC2P2 RNA 0.20 TCGA-MV-A51V-01 2 85553785 85553785 C G TGOLN2 Missense_Mutation p.G357A 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-MV-A51V-01 2 85554546 85554546 C G TGOLN2 Missense_Mutation p.K103N 0.17 deleterious(0.02) possibly_damaging(0.895) TCGA-MV-A51V-01 2 85595871 85595871 G A ELMOD3 Missense_Mutation p.E88K 0.11 tolerated(0.38) possibly_damaging(0.466) TCGA-MV-A51V-01 2 85824037 85824037 C T RNF181 Silent p.L104L 0.14 TCGA-MV-A51V-01 2 86257381 86257381 C T POLR1A Missense_Mutation p.E1573K 0.17 tolerated(0.27) benign(0.023) TCGA-MV-A51V-01 2 86344253 86344253 C G PTCD3 Missense_Mutation p.Q129E 0.23 tolerated(0.61) benign(0.013) TCGA-MV-A51V-01 2 89309752 89309752 C A IGKV1-9 Missense_Mutation p.L26F 0.10 deleterious_low_confidence(0) possibly_damaging(0.688) TCGA-MV-A51V-01 2 89544386 89544386 C G IGKV2-30 Missense_Mutation p.D80H 0.52 tolerated(0.54) benign(0.005) TCGA-MV-A51V-01 2 9540173 9540173 G A ASAP2 Silent p.L902L 0.12 TCGA-MV-A51V-01 2 96948957 96948957 C G SNRNP200 Missense_Mutation p.E1633Q 0.10 tolerated(0.26) benign(0.084) TCGA-MV-A51V-01 2 96949446 96949446 G C SNRNP200 Missense_Mutation p.F1530L 0.16 deleterious(0.02) benign(0.02) TCGA-MV-A51V-01 2 96992385 96992385 G C ITPRIPL1 Missense_Mutation p.E14Q 0.14 tolerated_low_confidence(0.11) benign(0.126) TCGA-MV-A51V-01 2 96992579 96992579 G T ITPRIPL1 Missense_Mutation p.Q78H 0.15 deleterious(0.01) probably_damaging(0.944) TCGA-MV-A51V-01 2 96992664 96992664 G A ITPRIPL1 Missense_Mutation p.D107N 0.20 tolerated(0.36) benign(0.001) TCGA-MV-A51V-01 2 96992991 96992991 G A ITPRIPL1 Missense_Mutation p.E216K 0.17 tolerated(0.07) probably_damaging(0.994) TCGA-MV-A51V-01 2 98392323 98392323 C G TMEM131 Missense_Mutation p.E1435Q 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-MV-A51V-01 2 99291546 99291546 C G MGAT4A Missense_Mutation p.E119Q 0.46 tolerated(0.12) possibly_damaging(0.756) TCGA-MV-A51V-01 2 99636783 99636783 G C TSGA10 Missense_Mutation p.Q593E 0.28 deleterious(0.05) possibly_damaging(0.599) TCGA-MV-A51V-01 2 99767184 99767184 G T C2ORF15 Nonsense_Mutation p.E89* 0.11 TCGA-MV-A51V-01 3 100451411 100451411 C G TFG Missense_Mutation p.Q159E 0.11 tolerated(0.45) benign(0.018) TCGA-MV-A51V-01 3 101476528 101476528 C T CEP97 Nonsense_Mutation p.Q360* 0.11 TCGA-MV-A51V-01 3 10251279 10251279 C T IRAK2 Missense_Mutation p.S144F 0.13 tolerated(0.06) benign(0.002) TCGA-MV-A51V-01 3 105253536 105253536 G C ALCAM Missense_Mutation p.D193H 0.12 deleterious(0) probably_damaging(0.93) TCGA-MV-A51V-01 3 105459345 105459345 C T CBLB Missense_Mutation p.E326K 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-MV-A51V-01 3 107492213 107492213 G C BBX Missense_Mutation p.E549Q 0.08 tolerated(0.11) benign(0.34) TCGA-MV-A51V-01 3 111604152 111604152 C T PHLDB2 Missense_Mutation p.R410W 0.10 deleterious(0) probably_damaging(0.981) TCGA-MV-A51V-01 3 111639242 111639242 G C PHLDB2 Missense_Mutation p.K659N 0.25 tolerated(0.19) benign(0.016) TCGA-MV-A51V-01 3 111849318 111849318 C G GCSAM Missense_Mutation p.M26I 0.08 tolerated(0.37) benign(0.025) TCGA-MV-A51V-01 3 112710180 112710180 G C GTPBP8 Missense_Mutation p.E112Q 0.09 deleterious(0.04) probably_damaging(0.913) TCGA-MV-A51V-01 3 11301350 11301350 C G HRH1 Missense_Mutation p.F209L 0.05 tolerated(0.08) benign(0.387) TCGA-MV-A51V-01 3 113330987 113330987 C G SIDT1 Missense_Mutation p.L638V 0.10 tolerated(0.26) benign(0.06) TCGA-MV-A51V-01 3 113673024 113673024 G A ZDHHC23 Silent p.L213L 0.06 TCGA-MV-A51V-01 3 119331917 119331917 G T PLA1A Missense_Mutation p.D206Y 0.44 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 3 119378786 119378786 G C POPDC2 Missense_Mutation p.S162C 0.35 deleterious(0) probably_damaging(0.987) TCGA-MV-A51V-01 3 121230866 121230866 G C POLQ Missense_Mutation p.I493M 0.16 deleterious(0) possibly_damaging(0.671) TCGA-MV-A51V-01 3 122829805 122829805 C G PDIA5 Silent p.L165L 0.18 TCGA-MV-A51V-01 3 124132422 124132422 G C KALRN Missense_Mutation p.E816Q 0.11 deleterious(0.03) possibly_damaging(0.736) TCGA-MV-A51V-01 3 127358213 127358213 G A PODXL2 Missense_Mutation p.E66K 0.11 tolerated(0.05) probably_damaging(0.997) TCGA-MV-A51V-01 3 129137120 129137120 C G EFCAB12 Missense_Mutation p.E220Q 0.43 tolerated(0.08) benign(0.176) TCGA-MV-A51V-01 3 130714927 130714927 A G ATP2C1 Missense_Mutation p.K734E 0.08 deleterious(0.01) possibly_damaging(0.69) TCGA-MV-A51V-01 3 130992367 130992367 C A NEK11 Missense_Mutation p.P556Q 0.08 tolerated(0.34) benign(0.352) TCGA-MV-A51V-01 3 132280014 132280014 C A ACAD11 Missense_Mutation p.K683N 0.22 deleterious(0) benign(0.118) TCGA-MV-A51V-01 3 133336118 133336118 G C TOPBP1 Missense_Mutation p.I1215M 0.22 tolerated(0.07) benign(0.01) TCGA-MV-A51V-01 3 134670652 134670652 C G EPHB1 Missense_Mutation p.S188C 0.07 deleterious(0) probably_damaging(0.981) TCGA-MV-A51V-01 3 135721753 135721753 G C PPP2R3A Missense_Mutation p.K471N 0.07 tolerated_low_confidence(0.22) benign(0.001) TCGA-MV-A51V-01 3 136136732 136136732 C G STAG1 Missense_Mutation p.E731Q 0.12 tolerated(0.23) possibly_damaging(0.625) TCGA-MV-A51V-01 3 137729235 137729235 G C CLDN18 Missense_Mutation p.Q56H 0.11 tolerated(0.06) possibly_damaging(0.528) TCGA-MV-A51V-01 3 139074558 139074558 C T COPB2 3'Flank 0.08 TCGA-MV-A51V-01 3 139297816 139297816 C T NMNAT3 Missense_Mutation p.R27Q 0.27 deleterious(0.02) probably_damaging(1) TCGA-MV-A51V-01 3 140397169 140397169 C G TRIM42 Nonsense_Mutation p.S33* 0.20 TCGA-MV-A51V-01 3 141161776 141161776 G A ZBTB38 Silent p.P182P 0.08 TCGA-MV-A51V-01 3 141464003 141464003 G C RNF7 Missense_Mutation p.V76L 0.13 deleterious(0) benign(0.168) TCGA-MV-A51V-01 3 14555218 14555218 C T GRIP2 RNA 0.46 TCGA-MV-A51V-01 3 145789144 145789144 G C PLOD2 Missense_Mutation p.L639V 0.08 deleterious(0.03) benign(0.281) TCGA-MV-A51V-01 3 148858271 148858271 G A HPS3 Missense_Mutation p.R233K 0.32 tolerated(1) benign(0.001) TCGA-MV-A51V-01 3 150140899 150140899 C G TSC22D2 Silent p.L674L 0.09 TCGA-MV-A51V-01 3 15046080 15046080 C G NR2C2 Missense_Mutation p.S30C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.759) TCGA-MV-A51V-01 3 151073762 151073762 C G MED12L Missense_Mutation p.Q831E 0.11 tolerated(0.11) possibly_damaging(0.537) TCGA-MV-A51V-01 3 15137583 15137583 G C ZFYVE20 Silent p.L15L 0.25 TCGA-MV-A51V-01 3 154055511 154055511 C G GPR149 Missense_Mutation p.E725Q 0.07 deleterious(0.05) probably_damaging(0.998) TCGA-MV-A51V-01 3 154832801 154832801 A G MME Missense_Mutation p.N72S 0.10 tolerated(0.06) possibly_damaging(0.502) TCGA-MV-A51V-01 3 155649629 155649629 C T GMPS Silent p.L546L 0.06 TCGA-MV-A51V-01 3 158376764 158376764 G C GFM1 Missense_Mutation p.K379N 0.14 deleterious(0.04) benign(0.141) TCGA-MV-A51V-01 3 160150149 160150149 G C SMC4 Missense_Mutation p.D1126H 0.17 deleterious(0.01) benign(0.155) TCGA-MV-A51V-01 3 160151596 160151596 G - SMC4 Frame_Shift_Del p.%3D 0.18 TCGA-MV-A51V-01 3 160248661 160248661 G C KPNA4 Missense_Mutation p.Q151E 0.16 tolerated(0.06) benign(0.41) TCGA-MV-A51V-01 3 160253346 160253346 G C KPNA4 Nonsense_Mutation p.S81* 0.25 TCGA-MV-A51V-01 3 169644945 169644945 C A SAMD7 Missense_Mutation p.P299T 0.22 tolerated(0.11) possibly_damaging(0.536) TCGA-MV-A51V-01 3 169710702 169710702 G A SEC62 Missense_Mutation p.D351N 0.27 deleterious(0.02) unknown(0) TCGA-MV-A51V-01 3 169801719 169801719 C G GPR160 5'UTR 0.21 TCGA-MV-A51V-01 3 169801738 169801738 C G GPR160 5'UTR 0.17 TCGA-MV-A51V-01 3 17053338 17053338 G A PLCL2 Missense_Mutation p.D708N 0.17 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 3 171392322 171392322 G C PLD1 Missense_Mutation p.Q733E 0.09 tolerated(0.46) benign(0.027) TCGA-MV-A51V-01 3 174814756 174814756 C T NAALADL2 Silent p.L74L 0.18 TCGA-MV-A51V-01 3 175520977 175520977 G C NAALADL2 Missense_Mutation p.D792H 0.12 tolerated(0.12) benign(0.312) TCGA-MV-A51V-01 3 179082151 179082151 C G MFN1 Silent p.V201V 0.10 TCGA-MV-A51V-01 3 179470094 179470094 C T USP13 Silent p.F577F 0.09 TCGA-MV-A51V-01 3 183883251 183883251 C G DVL3 Silent p.L245L 0.28 TCGA-MV-A51V-01 3 184059942 184059942 G C FAM131A Missense_Mutation p.W138C 0.08 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 3 184090515 184090515 G T THPO Missense_Mutation p.S283Y 0.21 deleterious_low_confidence(0.04) benign(0.312) TCGA-MV-A51V-01 3 184295481 184295481 G A EPHB3 Missense_Mutation p.M505I 0.11 tolerated(0.08) benign(0.001) TCGA-MV-A51V-01 3 186256614 186256614 G C CRYGS Silent p.V136V 0.33 TCGA-MV-A51V-01 3 186257163 186257163 G C CRYGS Missense_Mutation p.S82C 0.12 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 3 186395484 186395484 C G HRG Missense_Mutation p.L464V 0.07 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 3 193384097 193384097 G C OPA1 Missense_Mutation p.D913H 0.15 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 3 195016498 195016498 C G ACAP2 Missense_Mutation p.K537N 0.29 tolerated(0.29) benign(0.001) TCGA-MV-A51V-01 3 195517658 195517658 T G MUC4 Missense_Mutation p.T265P 0.10 unknown(0) TCGA-MV-A51V-01 3 197598341 197598341 G C LRCH3 Nonstop_Mutation p.*713Sext*1 0.33 TCGA-MV-A51V-01 3 197712727 197712727 A G LMLN Missense_Mutation p.R299G 0.21 deleterious(0) probably_damaging(0.987) TCGA-MV-A51V-01 3 20216169 20216169 C G SGOL1 Missense_Mutation p.R285T 0.46 tolerated(0.06) benign(0.037) TCGA-MV-A51V-01 3 27436019 27436019 G C SLC4A7 Nonsense_Mutation p.S1027* 0.14 TCGA-MV-A51V-01 3 27436147 27436147 G C SLC4A7 Silent p.V984V 0.14 TCGA-MV-A51V-01 3 27436492 27436492 G C SLC4A7 Missense_Mutation p.Q931E 0.24 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 3 27760223 27760223 C T EOMES Intron 0.07 TCGA-MV-A51V-01 3 31774884 31774884 G T OSBPL10 Missense_Mutation p.H320Q 0.07 tolerated(0.31) benign(0.012) TCGA-MV-A51V-01 3 32932092 32932092 C G TRIM71 Missense_Mutation p.Q466E 0.09 tolerated(0.78) benign(0.17) TCGA-MV-A51V-01 3 33614803 33614803 G A CLASP2 Missense_Mutation p.S842L 0.11 deleterious(0) probably_damaging(0.992) TCGA-MV-A51V-01 3 37092022 37092022 G C MLH1 Missense_Mutation p.E717Q 0.10 tolerated(0.11) possibly_damaging(0.612) TCGA-MV-A51V-01 3 37323576 37323576 C A GOLGA4 Missense_Mutation p.S119Y 0.17 probably_damaging(0.985) TCGA-MV-A51V-01 3 37369297 37369297 G A GOLGA4 Missense_Mutation p.E1996K 0.15 possibly_damaging(0.792) TCGA-MV-A51V-01 3 37369306 37369306 G C GOLGA4 Missense_Mutation p.E1999Q 0.16 possibly_damaging(0.885) TCGA-MV-A51V-01 3 37583996 37583996 G C ITGA9 Missense_Mutation p.E537Q 0.18 tolerated(0.24) probably_damaging(0.967) TCGA-MV-A51V-01 3 38518910 38518910 C T ACVR2B Missense_Mutation p.S62F 0.18 deleterious(0.05) possibly_damaging(0.781) TCGA-MV-A51V-01 3 38833582 38833582 G A SCN10A Silent p.F116F 0.05 TCGA-MV-A51V-01 3 41759238 41759238 C G ULK4 Missense_Mutation p.E813Q 0.07 tolerated(0.17) benign(0.064) TCGA-MV-A51V-01 3 42234641 42234641 G T TRAK1 Nonsense_Mutation p.E282* 0.09 TCGA-MV-A51V-01 3 42610425 42610425 C G SEC22C Missense_Mutation p.K38N 0.09 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 3 44975428 44975428 G C ZDHHC3 Silent p.V160V 0.10 TCGA-MV-A51V-01 3 4508724 4508724 C T SUMF1 Missense_Mutation p.R69Q 0.23 tolerated(0.15) benign(0.01) TCGA-MV-A51V-01 3 45134888 45134888 G C CDCP1 Missense_Mutation p.S503C 0.13 deleterious(0.01) probably_damaging(0.938) TCGA-MV-A51V-01 3 45637746 45637746 G C LIMD1 Missense_Mutation p.E459Q 0.29 deleterious(0.02) possibly_damaging(0.898) TCGA-MV-A51V-01 3 46718218 46718218 C G ALS2CL Missense_Mutation p.E648Q 0.10 tolerated(0.12) possibly_damaging(0.616) TCGA-MV-A51V-01 3 4741622 4741622 G C ITPR1 Missense_Mutation p.L1496F 0.08 deleterious(0) possibly_damaging(0.669) TCGA-MV-A51V-01 3 47456103 47456103 G C SCAP Missense_Mutation p.Q1116E 0.10 deleterious(0.03) benign(0.142) TCGA-MV-A51V-01 3 4836825 4836825 G A ITPR1 Missense_Mutation p.M2280I 0.17 tolerated(1) benign(0.002) TCGA-MV-A51V-01 3 48508545 48508545 G A TREX1 Missense_Mutation p.R219Q 0.10 tolerated(0.83) benign(0.003) TCGA-MV-A51V-01 3 48510919 48510919 G A SHISA5 Missense_Mutation p.P162S 0.15 tolerated(0.5) probably_damaging(0.96) TCGA-MV-A51V-01 3 48511165 48511165 G C SHISA5 Missense_Mutation p.S131C 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-MV-A51V-01 3 48929415 48929415 C T SLC25A20 Missense_Mutation p.E66K 0.09 deleterious(0) possibly_damaging(0.858) TCGA-MV-A51V-01 3 49012274 49012274 G C ARIH2 Missense_Mutation p.E305Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 3 49017852 49017852 C T ARIH2 Nonsense_Mutation p.Q394* 0.30 TCGA-MV-A51V-01 3 49060541 49060541 G T NDUFAF3 Missense_Mutation p.G164V 0.35 deleterious(0) probably_damaging(0.969) TCGA-MV-A51V-01 3 49153323 49153323 G C USP19 Nonsense_Mutation p.S507* 0.09 TCGA-MV-A51V-01 3 49169963 49169963 C T LAMB2 Silent p.L70L 0.14 TCGA-MV-A51V-01 3 49294701 49294701 G C CCDC36 Missense_Mutation p.D591H 0.20 deleterious(0) unknown(0) TCGA-MV-A51V-01 3 49570458 49570458 G C DAG1 Missense_Mutation p.E838D 0.22 tolerated(0.15) probably_damaging(0.996) TCGA-MV-A51V-01 3 49692257 49692257 G C BSN Missense_Mutation p.Q1756H 0.09 unknown(0) TCGA-MV-A51V-01 3 49757948 49757948 G C RNF123 Missense_Mutation p.E1169Q 0.10 tolerated(0.32) benign(0.011) TCGA-MV-A51V-01 3 49866408 49866408 C T TRAIP 3'UTR 0.44 TCGA-MV-A51V-01 3 50006029 50006029 C G RBM6 Missense_Mutation p.L391V 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-MV-A51V-01 3 50114616 50114616 C G RBM6 3'UTR 0.24 TCGA-MV-A51V-01 3 51664905 51664905 C G RAD54L2 Silent p.V261V 0.15 TCGA-MV-A51V-01 3 51697088 51697088 C T RAD54L2 Silent p.P1352P 0.39 TCGA-MV-A51V-01 3 52183892 52183892 G A POC1A Missense_Mutation p.S72L 0.41 tolerated(0.1) probably_damaging(0.994) TCGA-MV-A51V-01 3 52245381 52245381 C T ALAS1 Silent p.F471F 0.19 TCGA-MV-A51V-01 3 52637603 52637603 C G PBRM1 Missense_Mutation p.E905Q 0.24 tolerated(0.19) possibly_damaging(0.759) TCGA-MV-A51V-01 3 52830792 52830792 G A ITIH3 Missense_Mutation p.E107K 0.33 deleterious(0.01) possibly_damaging(0.758) TCGA-MV-A51V-01 3 57135293 57135293 G C IL17RD Missense_Mutation p.L360V 0.12 tolerated(0.12) benign(0.17) TCGA-MV-A51V-01 3 57493459 57493459 G A DNAH12 Missense_Mutation p.L270F 0.08 deleterious(0) possibly_damaging(0.692) TCGA-MV-A51V-01 3 57543037 57543037 G A PDE12 Missense_Mutation p.E311K 0.31 deleterious(0) benign(0.063) TCGA-MV-A51V-01 3 57893678 57893678 G T SLMAP Missense_Mutation p.L489F 0.12 deleterious_low_confidence(0.04) benign(0.22) TCGA-MV-A51V-01 3 58095781 58095781 G A FLNB Missense_Mutation p.E790K 0.14 tolerated(0.15) benign(0.099) TCGA-MV-A51V-01 3 58154208 58154208 C T FLNB Missense_Mutation p.P2445S 0.26 tolerated(1) benign(0.122) TCGA-MV-A51V-01 3 58186733 58186733 C T DNASE1L3 Nonsense_Mutation p.W179* 0.07 TCGA-MV-A51V-01 3 62118284 62118284 G A PTPRG Silent p.P208P 0.10 TCGA-MV-A51V-01 3 62257145 62257145 G A PTPRG Missense_Mutation p.E1033K 0.35 deleterious(0) possibly_damaging(0.784) TCGA-MV-A51V-01 3 69088776 69088776 C G TMF1 Missense_Mutation p.E585Q 0.10 deleterious(0) possibly_damaging(0.591) TCGA-MV-A51V-01 3 69230359 69230359 C G FRMD4B Missense_Mutation p.E848Q 0.10 tolerated(0.18) benign(0.046) TCGA-MV-A51V-01 3 7782090 7782090 C T GRM7 Silent p.I915I 0.14 TCGA-MV-A51V-01 3 97596740 97596740 G C CRYBG3 Missense_Mutation p.K286N 0.20 deleterious(0.01) possibly_damaging(0.764) TCGA-MV-A51V-01 3 9759783 9759783 C T CPNE9 Silent p.L334L 0.26 TCGA-MV-A51V-01 3 99568524 99568524 C T FILIP1L Missense_Mutation p.E666K 0.09 deleterious(0) probably_damaging(0.962) TCGA-MV-A51V-01 4 104579413 104579413 G T TACR3 Silent p.L232L 0.46 TCGA-MV-A51V-01 4 106156446 106156446 G C TET2 Silent p.V449V 0.20 TCGA-MV-A51V-01 4 108911038 108911038 C G HADH 5'UTR 0.30 TCGA-MV-A51V-01 4 108911150 108911150 C G HADH Missense_Mutation p.S21W 0.27 deleterious(0) probably_damaging(0.953) TCGA-MV-A51V-01 4 113435704 113435704 G C NEUROG2 3'UTR 0.38 TCGA-MV-A51V-01 4 113541344 113541344 C T C4orf21 Silent p.V55V 0.44 TCGA-MV-A51V-01 4 122749313 122749313 C T BBS7 Missense_Mutation p.E668K 0.09 deleterious(0.03) possibly_damaging(0.861) TCGA-MV-A51V-01 4 123170738 123170738 G A KIAA1109 Missense_Mutation p.D1871N 0.10 possibly_damaging(0.678) TCGA-MV-A51V-01 4 128627780 128627780 G C INTU Missense_Mutation p.D643H 0.37 deleterious(0.01) possibly_damaging(0.771) TCGA-MV-A51V-01 4 13615286 13615286 C A BOD1L1 Splice_Site p.X392_splice 0.34 TCGA-MV-A51V-01 4 139140481 139140481 C G SLC7A11 Missense_Mutation p.D229H 0.15 deleterious(0.02) possibly_damaging(0.695) TCGA-MV-A51V-01 4 140280971 140280971 C G NAA15 Missense_Mutation p.I444M 0.09 deleterious(0) possibly_damaging(0.757) TCGA-MV-A51V-01 4 140375451 140375451 C T RAB33B Silent p.F34F 0.18 TCGA-MV-A51V-01 4 141545487 141545487 C T TBC1D9 Silent p.V985V 0.21 TCGA-MV-A51V-01 4 151505189 151505189 G C MAB21L2 Missense_Mutation p.E336D 0.51 tolerated(0.75) benign(0.009) TCGA-MV-A51V-01 4 152680008 152680008 G C PET112 Silent p.L81L 0.08 TCGA-MV-A51V-01 4 155157435 155157435 G A DCHS2 Missense_Mutation p.S2335F 0.07 deleterious(0) probably_damaging(0.99) TCGA-MV-A51V-01 4 155158282 155158282 G A DCHS2 Missense_Mutation p.L2053F 0.42 tolerated(0.5) possibly_damaging(0.73) TCGA-MV-A51V-01 4 15646139 15646139 C T FBXL5 Missense_Mutation p.E93K 0.30 tolerated(0.08) possibly_damaging(0.852) TCGA-MV-A51V-01 4 15646174 15646174 G C FBXL5 Missense_Mutation p.S81C 0.20 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 4 160274036 160274036 G A RAPGEF2 Missense_Mutation p.M1194I 0.19 tolerated_low_confidence(0.43) benign(0) TCGA-MV-A51V-01 4 164087786 164087786 G C NAF1 Missense_Mutation p.P32A 0.50 tolerated_low_confidence(0.27) benign(0.135) TCGA-MV-A51V-01 4 169294823 169294823 G C DDX60L Missense_Mutation p.I1590M 0.15 tolerated(0.17) benign(0.057) TCGA-MV-A51V-01 4 170028280 170028280 G A SH3RF1 Missense_Mutation p.S739L 0.42 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 4 175237430 175237430 G A CEP44 Missense_Mutation p.E359K 0.42 deleterious(0.01) possibly_damaging(0.493) TCGA-MV-A51V-01 4 17616418 17616418 G C MED28 Missense_Mutation p.E47D 0.10 tolerated(0.38) benign(0.001) TCGA-MV-A51V-01 4 17805489 17805489 C G DCAF16 Missense_Mutation p.E92D 0.07 tolerated_low_confidence(0.15) possibly_damaging(0.801) TCGA-MV-A51V-01 4 183245381 183245381 G A TENM3 Missense_Mutation p.E70K 0.71 tolerated_low_confidence(0.05) possibly_damaging(0.621) TCGA-MV-A51V-01 4 1991439 1991439 C G NELFA Missense_Mutation p.Q191H 0.05 tolerated(0.12) benign(0.087) TCGA-MV-A51V-01 4 2664878 2664878 G T FAM193A Missense_Mutation p.D357Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 4 2951722 2951722 C T NOP14 Silent p.L407L 0.26 TCGA-MV-A51V-01 4 2954043 2954043 C G NOP14 Missense_Mutation p.E277Q 0.31 tolerated(0.13) possibly_damaging(0.831) TCGA-MV-A51V-01 4 366464 366464 C G ZNF141 Missense_Mutation p.H80D 0.09 deleterious(0.01) benign(0.013) TCGA-MV-A51V-01 4 366777 366777 C G ZNF141 Nonsense_Mutation p.S184* 0.10 TCGA-MV-A51V-01 4 367281 367281 C G ZNF141 Nonsense_Mutation p.S352* 0.09 TCGA-MV-A51V-01 4 367475 367475 C G ZNF141 Missense_Mutation p.H417D 0.08 deleterious(0) probably_damaging(0.922) TCGA-MV-A51V-01 4 367544 367544 C G ZNF141 Missense_Mutation p.Q440E 0.12 tolerated(0.51) benign(0.011) TCGA-MV-A51V-01 4 38799208 38799208 C G TLR1 Missense_Mutation p.K415N 0.13 tolerated(1) benign(0) TCGA-MV-A51V-01 4 39271671 39271671 C G WDR19 Missense_Mutation p.S1145C 0.08 deleterious(0.03) possibly_damaging(0.547) TCGA-MV-A51V-01 4 40099084 40099084 G A N4BP2 Missense_Mutation p.E42K 0.12 tolerated(0.48) possibly_damaging(0.507) TCGA-MV-A51V-01 4 40440385 40440385 C T RBM47 Missense_Mutation p.E176K 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-MV-A51V-01 4 41648657 41648657 C T LIMCH1 Missense_Mutation p.S471L 0.05 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 4 41648877 41648877 C T LIMCH1 Silent p.P544P 0.07 TCGA-MV-A51V-01 4 42965114 42965114 C T GRXCR1 Missense_Mutation p.S197F 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-MV-A51V-01 4 43032531 43032531 C T GRXCR1 Nonsense_Mutation p.Q283* 0.18 TCGA-MV-A51V-01 4 48073624 48073624 G C TXK Silent p.V475V 0.13 TCGA-MV-A51V-01 4 49000521 49000521 C G CWH43 Missense_Mutation p.S253C 0.16 tolerated(0.09) benign(0.296) TCGA-MV-A51V-01 4 52943058 52943058 C G SPATA18 Missense_Mutation p.S291C 0.08 deleterious(0) possibly_damaging(0.823) TCGA-MV-A51V-01 4 55130128 55130128 G C PDGFRA Intron 0.35 TCGA-MV-A51V-01 4 55161320 55161320 G A PDGFRA Missense_Mutation p.E1051K 0.32 tolerated(0.07) benign(0.437) TCGA-MV-A51V-01 4 56345835 56345835 C T CLOCK Missense_Mutation p.E27K 0.15 deleterious(0) possibly_damaging(0.86) TCGA-MV-A51V-01 4 57179369 57179369 C G KIAA1211 Missense_Mutation p.P121A 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-MV-A51V-01 4 5966870 5966870 G C C4orf50 Missense_Mutation p.Q628E 0.19 deleterious(0.03) possibly_damaging(0.57) TCGA-MV-A51V-01 4 6055779 6055779 C G JAKMIP1 Missense_Mutation p.E602Q 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-MV-A51V-01 4 6303814 6303814 C G WFS1 Silent p.P764P 0.10 TCGA-MV-A51V-01 4 66356309 66356309 C G EPHA5 Missense_Mutation p.K396N 0.33 deleterious(0.01) benign(0.355) TCGA-MV-A51V-01 4 67142553 67142553 G C MIR1269A RNA 0.17 TCGA-MV-A51V-01 4 7056370 7056370 C G TADA2B Silent p.L284L 0.18 TCGA-MV-A51V-01 4 71555586 71555586 G A UTP3 Missense_Mutation p.E398K 0.09 tolerated(0.1) benign(0.003) TCGA-MV-A51V-01 4 77300508 77300508 G C CCDC158 Missense_Mutation p.L322V 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-MV-A51V-01 4 77303764 77303764 G A CCDC158 Nonsense_Mutation p.Q305* 0.17 TCGA-MV-A51V-01 4 77675924 77675924 C T SHROOM3 Nonsense_Mutation p.R1430* 0.86 TCGA-MV-A51V-01 4 8029550 8029550 G C ABLIM2 Silent p.L401L 0.09 TCGA-MV-A51V-01 4 80329257 80329257 G A GK2 Missense_Mutation p.A33V 0.43 tolerated(0.07) possibly_damaging(0.49) TCGA-MV-A51V-01 4 83278511 83278511 C T HNRNPD Silent p.V236V 0.28 TCGA-MV-A51V-01 4 84377182 84377182 G T MRPS18C 5'UTR 0.39 TCGA-MV-A51V-01 4 89442803 89442803 G C PIGY Silent p.L46L 0.77 TCGA-MV-A51V-01 4 95173958 95173958 G C SMARCAD1 Missense_Mutation p.D361H 0.58 deleterious(0.01) benign(0.025) TCGA-MV-A51V-01 5 101606434 101606434 G A SLCO4C1 Silent p.F232F 0.14 TCGA-MV-A51V-01 5 110560284 110560284 G T CAMK4 Missense_Mutation p.D35Y 0.19 deleterious(0) possibly_damaging(0.809) TCGA-MV-A51V-01 5 112177841 112177841 G C APC Missense_Mutation p.E2184Q 0.21 probably_damaging(0.998) TCGA-MV-A51V-01 5 114861288 114861288 C G FEM1C Missense_Mutation p.E191Q 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-MV-A51V-01 5 118502418 118502418 G C DMXL1 Missense_Mutation p.R1693T 0.12 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 5 121405751 121405751 G A LOX Missense_Mutation p.S415L 0.26 deleterious(0) probably_damaging(0.933) TCGA-MV-A51V-01 5 126732243 126732243 G C MEGF10 Missense_Mutation p.W144C 0.07 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 5 127466840 127466840 C A SLC12A2 Missense_Mutation p.A377D 0.10 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 5 131007433 131007433 G A FNIP1 Nonsense_Mutation p.Q902* 0.10 TCGA-MV-A51V-01 5 131607042 131607042 G C PDLIM4 Missense_Mutation p.D185H 0.10 deleterious(0.02) benign(0.054) TCGA-MV-A51V-01 5 131607046 131607046 T C PDLIM4 Missense_Mutation p.L186P 0.10 tolerated(0.32) benign(0.004) TCGA-MV-A51V-01 5 131893002 131893002 G C RAD50 5'UTR 0.15 TCGA-MV-A51V-01 5 132197313 132197313 C T GDF9 Missense_Mutation p.D445N 0.17 tolerated(0.09) possibly_damaging(0.766) TCGA-MV-A51V-01 5 132223559 132223559 G C AFF4 Nonsense_Mutation p.S971* 0.09 TCGA-MV-A51V-01 5 132270503 132270503 G C AFF4 Nonsense_Mutation p.S85* 0.37 TCGA-MV-A51V-01 5 133309491 133309491 G C VDAC1 Missense_Mutation p.L251V 0.26 deleterious(0.02) benign(0.109) TCGA-MV-A51V-01 5 133494131 133494131 C G SKP1 Intron 0.18 TCGA-MV-A51V-01 5 133984843 133984843 C T SEC24A Missense_Mutation p.S26L 0.46 tolerated_low_confidence(0.15) benign(0.003) TCGA-MV-A51V-01 5 134117662 134117662 C G DDX46 Missense_Mutation p.Q311E 0.30 tolerated(0.78) benign(0.011) TCGA-MV-A51V-01 5 135549150 135549150 C T TRPC7 Silent p.L854L 0.38 TCGA-MV-A51V-01 5 137271533 137271533 G C PKD2L2 Missense_Mutation p.E573D 0.15 tolerated(0.05) benign(0.009) TCGA-MV-A51V-01 5 137593587 137593587 C T GFRA3 Missense_Mutation p.D176N 0.31 tolerated(0.37) benign(0.442) TCGA-MV-A51V-01 5 137682532 137682532 G A FAM53C Missense_Mutation p.E355K 0.38 deleterious(0.04) possibly_damaging(0.801) TCGA-MV-A51V-01 5 137727291 137727291 C G KDM3B Nonsense_Mutation p.S657* 0.10 TCGA-MV-A51V-01 5 137727353 137727353 C A KDM3B Missense_Mutation p.H678N 0.10 tolerated_low_confidence(0.62) benign(0.012) TCGA-MV-A51V-01 5 139905868 139905868 G T ANKHD1 Missense_Mutation p.D1594Y 0.12 probably_damaging(0.996) TCGA-MV-A51V-01 5 139907592 139907592 G C ANKHD1 Missense_Mutation p.R1741T 0.21 probably_damaging(0.996) TCGA-MV-A51V-01 5 139909249 139909249 G A ANKHD1 Missense_Mutation p.D2240N 0.39 possibly_damaging(0.837) TCGA-MV-A51V-01 5 139928927 139928927 C G EIF4EBP3 3'UTR 0.08 TCGA-MV-A51V-01 5 140174688 140174688 C G PCDHA2 Missense_Mutation p.R47G 0.29 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-MV-A51V-01 5 140559803 140559803 G C PCDHB8 Missense_Mutation p.E730Q 0.06 deleterious_low_confidence(0.03) benign(0.026) TCGA-MV-A51V-01 5 140562149 140562149 G A PCDHB16 Nonsense_Mutation p.W5* 0.44 TCGA-MV-A51V-01 5 140626579 140626579 G C PCDHB15 Missense_Mutation p.R478T 0.05 tolerated_low_confidence(0.15) benign(0.004) TCGA-MV-A51V-01 5 140723632 140723632 G C PCDHGA3 Missense_Mutation p.R11T 0.14 deleterious_low_confidence(0.04) benign(0.023) TCGA-MV-A51V-01 5 140730510 140730510 G C PCDHGB1 Missense_Mutation p.R228P 0.38 tolerated(0.23) possibly_damaging(0.482) TCGA-MV-A51V-01 5 140745425 140745425 G C PCDHGA5 Missense_Mutation p.D510H 0.38 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-MV-A51V-01 5 140750005 140750005 G A PCDHGB3 Missense_Mutation p.R15Q 0.18 tolerated(1) benign(0.031) TCGA-MV-A51V-01 5 140764043 140764043 G C PCDHGA7 Missense_Mutation p.R526T 0.14 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-MV-A51V-01 5 140784667 140784667 G T PCDHGA9 Silent p.L716L 0.16 TCGA-MV-A51V-01 5 140867030 140867030 G C PCDHGC4 Missense_Mutation p.D764H 0.22 deleterious(0) probably_damaging(0.94) TCGA-MV-A51V-01 5 140958172 140958172 G A DIAPH1 Silent p.I318I 0.26 TCGA-MV-A51V-01 5 141243809 141243809 G A PCDH1 Missense_Mutation p.S696L 0.08 deleterious(0) probably_damaging(0.954) TCGA-MV-A51V-01 5 14492921 14492921 C G TRIO Silent p.L2626L 0.08 TCGA-MV-A51V-01 5 145547729 145547729 C G LARS Missense_Mutation p.E132Q 0.10 tolerated(0.33) benign(0.004) TCGA-MV-A51V-01 5 145608582 145608582 C G RBM27 Nonsense_Mutation p.S126* 0.09 TCGA-MV-A51V-01 5 148709297 148709297 G C AFAP1L1 Missense_Mutation p.E627Q 0.21 deleterious(0.05) benign(0.196) TCGA-MV-A51V-01 5 149755049 149755049 G C TCOF1 Missense_Mutation p.E546Q 0.08 tolerated(0.13) benign(0.078) TCGA-MV-A51V-01 5 150404951 150404951 C T GPX3 Silent p.L46L 0.08 TCGA-MV-A51V-01 5 150905326 150905326 C T FAT2 Intron 0.24 TCGA-MV-A51V-01 5 150946215 150946215 C G FAT2 Missense_Mutation p.E760Q 0.10 possibly_damaging(0.533) TCGA-MV-A51V-01 5 153381828 153381828 C G FAM114A2 Missense_Mutation p.R413S 0.13 deleterious(0) possibly_damaging(0.901) TCGA-MV-A51V-01 5 153381912 153381912 C G FAM114A2 Silent p.L385L 0.16 TCGA-MV-A51V-01 5 156589643 156589643 G C FAM71B Missense_Mutation p.P545A 0.07 tolerated(0.23) benign(0.025) TCGA-MV-A51V-01 5 156788582 156788582 C G CYFIP2 Missense_Mutation p.F979L 0.15 tolerated(0.13) benign(0.443) TCGA-MV-A51V-01 5 157158638 157158638 C T THG1L Missense_Mutation p.R64W 0.12 deleterious(0) probably_damaging(0.983) TCGA-MV-A51V-01 5 158630581 158630581 C T RNF145 Silent p.L45L 0.09 TCGA-MV-A51V-01 5 15936912 15936912 G A FBXL7 Missense_Mutation p.D365N 0.14 deleterious(0) probably_damaging(0.995) TCGA-MV-A51V-01 5 16479000 16479000 C T FAM134B Missense_Mutation p.G256E 0.15 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 5 167850909 167850909 C T WWC1 Missense_Mutation p.P549L 0.10 deleterious(0.01) probably_damaging(1) TCGA-MV-A51V-01 5 167855723 167855723 C A WWC1 Nonsense_Mutation p.S644* 0.13 TCGA-MV-A51V-01 5 167858286 167858286 C A WWC1 Missense_Mutation p.S706Y 0.18 deleterious(0) possibly_damaging(0.844) TCGA-MV-A51V-01 5 167891886 167891886 G C WWC1 Missense_Mutation p.K1029N 0.17 deleterious(0.01) benign(0.425) TCGA-MV-A51V-01 5 170351446 170351446 G C RANBP17 Missense_Mutation p.E454Q 0.52 tolerated(0.15) possibly_damaging(0.479) TCGA-MV-A51V-01 5 175395153 175395153 G C THOC3 Missense_Mutation p.S20W 0.14 deleterious_low_confidence(0) benign(0.071) TCGA-MV-A51V-01 5 175772436 175772436 G C SIMC1 Missense_Mutation p.W454C 0.09 tolerated_low_confidence(0.06) benign(0.002) TCGA-MV-A51V-01 5 176013005 176013005 C G CDHR2 Missense_Mutation p.L929V 0.08 deleterious(0.03) benign(0.033) TCGA-MV-A51V-01 5 176333038 176333038 G C UIMC1 Missense_Mutation p.I641M 0.09 tolerated(0.14) benign(0.028) TCGA-MV-A51V-01 5 176636970 176636970 G A NSD1 Missense_Mutation p.E524K 0.09 deleterious_low_confidence(0) benign(0.21) TCGA-MV-A51V-01 5 176765496 176765496 G A LMAN2 Silent p.L142L 0.06 TCGA-MV-A51V-01 5 178413611 178413611 G A GRM6 Silent p.F548F 0.13 TCGA-MV-A51V-01 5 179018730 179018730 G A RUFY1 Silent p.K411K 0.09 TCGA-MV-A51V-01 5 179264766 179264766 G C C5orf45 Missense_Mutation p.I219M 0.12 deleterious(0.01) benign(0.283) TCGA-MV-A51V-01 5 180377494 180377494 G A BTNL8 Missense_Mutation p.E485K 0.11 tolerated(0.33) benign(0.001) TCGA-MV-A51V-01 5 180661493 180661493 C A TRIM41 Silent p.L537L 0.15 TCGA-MV-A51V-01 5 191767 191767 C G LRRC14B Missense_Mutation p.F38L 0.18 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 5 19473424 19473424 G A CDH18 Nonsense_Mutation p.Q762* 0.11 TCGA-MV-A51V-01 5 19544087 19544087 G T CDH18 Missense_Mutation p.D427E 0.12 tolerated(0.92) benign(0.003) TCGA-MV-A51V-01 5 31472304 31472304 G C DROSHA Missense_Mutation p.L703V 0.20 deleterious(0.02) benign(0.405) TCGA-MV-A51V-01 5 32088214 32088214 G A PDZD2 Missense_Mutation p.D1554N 0.40 tolerated(0.47) benign(0.062) TCGA-MV-A51V-01 5 32108252 32108252 G C PDZD2 3'UTR 0.14 TCGA-MV-A51V-01 5 33751585 33751585 C T ADAMTS12 Silent p.E186E 0.47 TCGA-MV-A51V-01 5 34814771 34814771 C A RAI14 Missense_Mutation p.F315L 0.42 tolerated(0.78) possibly_damaging(0.669) TCGA-MV-A51V-01 5 34824525 34824525 C G RAI14 Missense_Mutation p.Q863E 0.09 deleterious(0) probably_damaging(0.995) TCGA-MV-A51V-01 5 35047971 35047971 C T AGXT2 Silent p.L9L 0.08 TCGA-MV-A51V-01 5 36984858 36984858 C T NIPBL Nonsense_Mutation p.Q526* 0.08 TCGA-MV-A51V-01 5 37198950 37198950 G T C5orf42 Missense_Mutation p.L1176I 0.26 tolerated(0.06) benign(0.124) TCGA-MV-A51V-01 5 39390620 39390620 C G DAB2 Missense_Mutation p.D130H 0.22 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 5 40853214 40853214 C G CARD6 Missense_Mutation p.Q594E 0.14 tolerated(0.13) benign(0.037) TCGA-MV-A51V-01 5 41155110 41155110 C G C6 Missense_Mutation p.D689H 0.09 deleterious(0) probably_damaging(0.986) TCGA-MV-A51V-01 5 43280223 43280223 C A NIM1K Missense_Mutation p.P235T 0.09 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 5 63507942 63507942 G A RNF180 Missense_Mutation p.M62I 0.16 tolerated(0.06) benign(0.005) TCGA-MV-A51V-01 5 71495416 71495416 G C MAP1B Missense_Mutation p.Q2078H 0.22 benign(0.189) TCGA-MV-A51V-01 5 71495417 71495417 G A MAP1B Missense_Mutation p.D2079N 0.22 benign(0.192) TCGA-MV-A51V-01 5 71756053 71756053 G T ZNF366 Nonsense_Mutation p.S424* 0.19 TCGA-MV-A51V-01 5 74892758 74892758 C G POLK Missense_Mutation p.S747C 0.10 tolerated(0.23) benign(0) TCGA-MV-A51V-01 5 76932868 76932868 C A OTP Silent p.V75V 0.23 TCGA-MV-A51V-01 5 77477446 77477446 G C AP3B1 Missense_Mutation p.S276C 0.12 deleterious(0) probably_damaging(0.976) TCGA-MV-A51V-01 5 80550929 80550929 G C CKMT2 Missense_Mutation p.E189Q 0.14 deleterious(0.01) probably_damaging(1) TCGA-MV-A51V-01 5 89910661 89910661 C T GPR98 Missense_Mutation p.S11F 0.31 possibly_damaging(0.831) TCGA-MV-A51V-01 5 93856436 93856436 C T KIAA0825 Missense_Mutation p.D163N 0.21 tolerated(0.07) benign(0.056) TCGA-MV-A51V-01 5 94031006 94031006 G C ANKRD32 Missense_Mutation p.E1056Q 0.06 tolerated(0.2) benign(0.265) TCGA-MV-A51V-01 5 96332203 96332203 C G LNPEP Missense_Mutation p.S506C 0.20 deleterious(0.01) possibly_damaging(0.762) TCGA-MV-A51V-01 5 99871143 99871143 C T FAM174A 5'UTR 0.16 TCGA-MV-A51V-01 6 106634469 106634469 C G ATG5 Silent p.L258L 0.15 TCGA-MV-A51V-01 6 109415001 109415001 G C SESN1 Missense_Mutation p.I92M 0.10 tolerated(0.07) benign(0.087) TCGA-MV-A51V-01 6 111621351 111621351 C G REV3L Missense_Mutation p.K3087N 0.46 deleterious(0.01) possibly_damaging(0.845) TCGA-MV-A51V-01 6 116575046 116575046 C G TSPYL4 Silent p.A42A 0.52 TCGA-MV-A51V-01 6 117704490 117704490 G A ROS1 Missense_Mutation p.S829F 0.14 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 6 117706942 117706942 G C ROS1 Missense_Mutation p.I736M 0.35 tolerated(0.06) benign(0.352) TCGA-MV-A51V-01 6 11778996 11778996 G A ADTRP 5'UTR 0.14 TCGA-MV-A51V-01 6 123892188 123892188 C T TRDN Missense_Mutation p.E38K 0.36 deleterious_low_confidence(0) unknown(0) TCGA-MV-A51V-01 6 129475818 129475818 G C LAMA2 Missense_Mutation p.R399T 0.14 deleterious(0) probably_damaging(0.986) TCGA-MV-A51V-01 6 129962991 129962991 G C ARHGAP18 Missense_Mutation p.Q96E 0.13 tolerated(0.26) benign(0.184) TCGA-MV-A51V-01 6 135518204 135518204 G C MYB Missense_Mutation p.E437Q 0.26 tolerated(0.12) benign(0.012) TCGA-MV-A51V-01 6 137017185 137017185 G C MAP3K5 Missense_Mutation p.S329C 0.19 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 6 137245754 137245754 G C SLC35D3 Missense_Mutation p.E391Q 0.15 tolerated_low_confidence(0.1) benign(0.001) TCGA-MV-A51V-01 6 142510607 142510607 C G VTA1 Missense_Mutation p.I152M 0.14 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 6 144780043 144780043 G C UTRN Missense_Mutation p.D808H 0.10 tolerated(0.06) possibly_damaging(0.671) TCGA-MV-A51V-01 6 144852315 144852315 G C UTRN Missense_Mutation p.E2012Q 0.17 tolerated(0.33) benign(0.052) TCGA-MV-A51V-01 6 146271550 146271550 G C SHPRH Missense_Mutation p.H278D 0.14 tolerated(0.95) benign(0) TCGA-MV-A51V-01 6 150211075 150211075 C G RAET1E Missense_Mutation p.G98R 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-MV-A51V-01 6 150342130 150342130 G C RAET1L Missense_Mutation p.S181C 0.15 deleterious(0.04) possibly_damaging(0.852) TCGA-MV-A51V-01 6 150387102 150387102 C T ULBP3 Silent p.L95L 0.06 TCGA-MV-A51V-01 6 151766453 151766453 G C RMND1 Missense_Mutation p.S165C 0.11 deleterious(0) possibly_damaging(0.841) TCGA-MV-A51V-01 6 152676053 152676053 C G SYNE1 Missense_Mutation p.R3556T 0.08 possibly_damaging(0.848) TCGA-MV-A51V-01 6 152751672 152751672 C G SYNE1 Missense_Mutation p.G1545A 0.10 benign(0.005) TCGA-MV-A51V-01 6 153296336 153296336 G C FBXO5 Missense_Mutation p.S175C 0.09 tolerated(0.16) benign(0.011) TCGA-MV-A51V-01 6 159653120 159653120 C T FNDC1 Missense_Mutation p.R526C 0.11 deleterious_low_confidence(0.04) unknown(0) TCGA-MV-A51V-01 6 161519420 161519420 C T MAP3K4 Missense_Mutation p.S1212F 0.06 tolerated(0.71) possibly_damaging(0.498) TCGA-MV-A51V-01 6 161536185 161536185 C G MAP3K4 Missense_Mutation p.Q1553E 0.21 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 6 16327170 16327170 G A ATXN1 Nonsense_Mutation p.Q458* 0.26 TCGA-MV-A51V-01 6 167417331 167417331 G C FGFR1OP Intron 0.33 TCGA-MV-A51V-01 6 170592471 170592471 G A DLL1 Silent p.F632F 0.10 TCGA-MV-A51V-01 6 18237725 18237725 C G DEK Missense_Mutation p.R262T 0.11 tolerated(0.08) possibly_damaging(0.879) TCGA-MV-A51V-01 6 25619794 25619794 G C LRRC16A Missense_Mutation p.E1367Q 0.11 deleterious_low_confidence(0.01) benign(0.267) TCGA-MV-A51V-01 6 26056117 26056117 C A HIST1H1C Silent p.A180A 0.14 TCGA-MV-A51V-01 6 26204945 26204945 G C HIST1H4E Missense_Mutation p.D25H 0.26 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-MV-A51V-01 6 26452544 26452544 C G BTN3A3 Missense_Mutation p.L554V 0.26 tolerated(0.11) benign(0.321) TCGA-MV-A51V-01 6 26463619 26463619 C T BTN2A1 Missense_Mutation p.S193F 0.13 tolerated(0.64) benign(0.039) TCGA-MV-A51V-01 6 26468645 26468645 G A BTN2A1 Silent p.V484V 0.11 TCGA-MV-A51V-01 6 27806021 27806021 G A HIST1H2AK Nonsense_Mutation p.R33* 0.34 TCGA-MV-A51V-01 6 29012688 29012688 C G OR2W1 Missense_Mutation p.D89H 0.10 deleterious(0.03) benign(0.01) TCGA-MV-A51V-01 6 29795877 29795877 G C HLA-G Missense_Mutation p.E43Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.593) TCGA-MV-A51V-01 6 30121860 30121860 G C TRIM10 Missense_Mutation p.F444L 0.16 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 6 30653002 30653002 G A PPP1R18 Missense_Mutation p.S265L 0.07 tolerated_low_confidence(0.08) benign(0.002) TCGA-MV-A51V-01 6 30681748 30681748 C T MDC1 Missense_Mutation p.D117N 0.22 tolerated(0.1) benign(0.037) TCGA-MV-A51V-01 6 31118785 31118785 C G CCHCR1 Missense_Mutation p.E306Q 0.05 tolerated(0.26) benign(0.065) TCGA-MV-A51V-01 6 31736937 31736937 C G VWA7 Missense_Mutation p.R454P 0.10 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 6 31778156 31778156 C T HSPA1L Missense_Mutation p.E532K 0.24 deleterious_low_confidence(0.01) benign(0.006) TCGA-MV-A51V-01 6 31795699 31795699 G A HSPA1B 5'UTR 0.24 TCGA-MV-A51V-01 6 32046839 32046839 A C RNA5SP206 5'Flank 0.11 TCGA-MV-A51V-01 6 32260983 32260983 C G C6orf10 Missense_Mutation p.K489N 0.19 tolerated(0.11) possibly_damaging(0.801) TCGA-MV-A51V-01 6 32726649 32726649 C T HLA-DQB2 Silent p.Q208Q 0.11 TCGA-MV-A51V-01 6 33423132 33423132 C A ZBTB9 Silent p.L85L 0.28 TCGA-MV-A51V-01 6 33657034 33657034 C T ITPR3 Silent p.L2238L 0.14 TCGA-MV-A51V-01 6 34664339 34664339 C T C6orf106 Silent p.Q14Q 0.15 TCGA-MV-A51V-01 6 34957049 34957049 G A ANKS1A Missense_Mutation p.E420K 0.25 tolerated_low_confidence(0.08) benign(0.269) TCGA-MV-A51V-01 6 35478696 35478696 C G TULP1 Silent p.L147L 0.11 TCGA-MV-A51V-01 6 36106787 36106787 G A MAPK13 Missense_Mutation p.D325N 0.28 deleterious(0.01) benign(0) TCGA-MV-A51V-01 6 36298263 36298263 G A C6orf222 Missense_Mutation p.H69Y 0.17 deleterious(0.03) benign(0.009) TCGA-MV-A51V-01 6 36437987 36437987 C A KCTD20 Nonsense_Mutation p.S38* 0.09 TCGA-MV-A51V-01 6 36564702 36564702 G C SRSF3 Missense_Mutation p.D55H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-MV-A51V-01 6 39290211 39290211 C G KCNK16 Missense_Mutation p.E36Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 6 4069820 4069820 C T FAM217A Missense_Mutation p.D213N 0.17 deleterious(0) probably_damaging(0.978) TCGA-MV-A51V-01 6 41185544 41185544 G C TREML3P RNA 0.21 TCGA-MV-A51V-01 6 42600415 42600415 C G UBR2 Missense_Mutation p.F469L 0.26 tolerated(0.69) benign(0.032) TCGA-MV-A51V-01 6 43171253 43171253 C G CUL9 Silent p.L1316L 0.07 TCGA-MV-A51V-01 6 43325119 43325119 G A ZNF318 Silent p.L311L 0.10 TCGA-MV-A51V-01 6 43581679 43581679 G C POLH Missense_Mutation p.M509I 0.22 tolerated(0.22) benign(0.001) TCGA-MV-A51V-01 6 43752298 43752298 G C VEGFA Nonstop_Mutation p.*413Sext*? 0.25 TCGA-MV-A51V-01 6 43968406 43968406 C A C6orf223 Nonsense_Mutation p.S17* 0.18 TCGA-MV-A51V-01 6 43968429 43968429 C G C6orf223 Missense_Mutation p.L25V 0.13 tolerated_low_confidence(0.39) unknown(0) TCGA-MV-A51V-01 6 44140778 44140778 C T CAPN11 Silent p.F210F 0.14 TCGA-MV-A51V-01 6 64422311 64422311 G C PHF3 Missense_Mutation p.Q1609H 0.09 deleterious(0.01) benign(0.17) TCGA-MV-A51V-01 6 70926736 70926736 C T COL9A1 Missense_Mutation p.R877Q 0.26 benign(0.121) TCGA-MV-A51V-01 6 71004037 71004037 C A COL9A1 Missense_Mutation p.D177Y 0.43 unknown(0) TCGA-MV-A51V-01 6 71298350 71298350 G C C6orf57 Missense_Mutation p.E84Q 0.18 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 6 71464697 71464697 G T SMAP1 Missense_Mutation p.M89I 0.14 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 6 75848596 75848596 G A COL12A1 Missense_Mutation p.S1680L 0.10 benign(0.257) TCGA-MV-A51V-01 6 7727747 7727747 C G BMP6 Missense_Mutation p.L187V 0.33 tolerated(0.26) benign(0.009) TCGA-MV-A51V-01 6 86203583 86203583 C G NT5E Missense_Mutation p.S529C 0.10 deleterious(0.03) benign(0.019) TCGA-MV-A51V-01 6 87966202 87966202 G A ZNF292 Missense_Mutation p.G952E 0.14 tolerated_low_confidence(1) benign(0.002) TCGA-MV-A51V-01 6 90385267 90385267 C G MDN1 Missense_Mutation p.R4226T 0.38 benign(0.035) TCGA-MV-A51V-01 6 99347205 99347205 A G FBXL4 Missense_Mutation p.F419S 0.08 deleterious(0) probably_damaging(0.993) TCGA-MV-A51V-01 6 99729273 99729273 C G FAXC Missense_Mutation p.E333Q 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-MV-A51V-01 7 100087018 100087018 C G NYAP1 Silent p.L558L 0.21 TCGA-MV-A51V-01 7 100348274 100348274 G A ZAN Missense_Mutation p.D426N 0.19 benign(0.331) TCGA-MV-A51V-01 7 102040021 102040021 G C PRKRIP1 Missense_Mutation p.E78Q 0.12 deleterious(0) probably_damaging(0.931) TCGA-MV-A51V-01 7 102574735 102574735 C G LRRC17 Missense_Mutation p.F125L 0.23 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 102939934 102939934 G A PMPCB Silent p.K95K 0.20 TCGA-MV-A51V-01 7 104719314 104719314 C G KMT2E Missense_Mutation p.F384L 0.16 deleterious(0.01) benign(0.418) TCGA-MV-A51V-01 7 104783606 104783606 C T SRPK2 Missense_Mutation p.E329K 0.09 tolerated(0.21) benign(0.123) TCGA-MV-A51V-01 7 105655578 105655578 G T CDHR3 Nonsense_Mutation p.E416* 0.29 TCGA-MV-A51V-01 7 105664873 105664873 C G CDHR3 Missense_Mutation p.S708C 0.15 deleterious(0) probably_damaging(0.976) TCGA-MV-A51V-01 7 106888890 106888890 C G COG5 Missense_Mutation p.D633H 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-MV-A51V-01 7 107580591 107580591 C G LAMB1 Missense_Mutation p.E1202Q 0.06 tolerated(1) benign(0.018) TCGA-MV-A51V-01 7 107790384 107790384 G C NRCAM Missense_Mutation p.P1296A 0.05 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 7 108213698 108213698 G A DNAJB9 Silent p.Q191Q 0.07 TCGA-MV-A51V-01 7 1132338 1132338 G A GPER1 Missense_Mutation p.S325N 0.08 deleterious(0.01) probably_damaging(0.971) TCGA-MV-A51V-01 7 116435738 116435738 G A MET Silent p.L1294L 0.17 TCGA-MV-A51V-01 7 116937715 116937715 G A WNT2 Silent p.L268L 0.24 TCGA-MV-A51V-01 7 120979130 120979130 A C WNT16 Missense_Mutation p.I277L 0.61 tolerated(0.6) benign(0.003) TCGA-MV-A51V-01 7 122526107 122526107 G A CADPS2 Silent p.I95I 0.18 TCGA-MV-A51V-01 7 123101473 123101473 G C IQUB Missense_Mutation p.Q649E 0.08 tolerated(0.46) benign(0.016) TCGA-MV-A51V-01 7 127669561 127669561 G T LRRC4 Missense_Mutation p.P378H 0.10 deleterious(0.03) benign(0.437) TCGA-MV-A51V-01 7 127669600 127669600 G T LRRC4 Missense_Mutation p.S365Y 0.10 deleterious(0) probably_damaging(0.941) TCGA-MV-A51V-01 7 127953306 127953306 C G RBM28 Silent p.V689V 0.29 TCGA-MV-A51V-01 7 128323085 128323085 C T FAM71F2 Missense_Mutation p.P268S 0.30 tolerated(0.13) benign(0.01) TCGA-MV-A51V-01 7 128415615 128415615 G C OPN1SW Missense_Mutation p.S77C 0.09 deleterious(0.03) benign(0.151) TCGA-MV-A51V-01 7 128481553 128481553 G T FLNC Missense_Mutation p.D685Y 0.16 deleterious(0.01) possibly_damaging(0.905) TCGA-MV-A51V-01 7 129910554 129910554 G T CPA2 Nonsense_Mutation p.E104* 0.10 TCGA-MV-A51V-01 7 131189123 131189123 G A PODXL Silent p.L542L 0.20 TCGA-MV-A51V-01 7 131859566 131859566 C T PLXNA4 Missense_Mutation p.E1330K 0.06 deleterious(0.02) possibly_damaging(0.856) TCGA-MV-A51V-01 7 131866167 131866167 G C PLXNA4 Silent p.L1155L 0.05 TCGA-MV-A51V-01 7 138818547 138818547 G C TTC26 5'UTR 0.09 TCGA-MV-A51V-01 7 140125951 140125951 G A RAB19 3'UTR 0.10 TCGA-MV-A51V-01 7 142561848 142561848 G A EPHB6 Missense_Mutation p.R97Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 7 142612513 142612513 C A TRPV5 Missense_Mutation p.G417V 0.19 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 7 144068278 144068278 G C ARHGEF5 Missense_Mutation p.E1186Q 0.07 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 146471475 146471475 T C CNTNAP2 Splice_Site p.X70_splice 0.15 TCGA-MV-A51V-01 7 1482058 1482058 C G MICALL2 Missense_Mutation p.S494T 0.04 tolerated(0.74) benign(0.367) TCGA-MV-A51V-01 7 148464708 148464708 C G CUL1 Intron 0.16 TCGA-MV-A51V-01 7 148801438 148801438 G C ZNF425 Missense_Mutation p.Q509E 0.13 tolerated(0.24) benign(0.038) TCGA-MV-A51V-01 7 148802215 148802215 C T ZNF425 Missense_Mutation p.E250K 0.27 tolerated(0.49) benign(0.004) TCGA-MV-A51V-01 7 149461792 149461792 G T ZNF467 3'UTR 0.31 TCGA-MV-A51V-01 7 150027532 150027532 G C ZBED6CL Silent p.L13L 0.09 TCGA-MV-A51V-01 7 150027745 150027745 G C ZBED6CL Missense_Mutation p.K84N 0.06 tolerated(0.45) possibly_damaging(0.663) TCGA-MV-A51V-01 7 150217295 150217295 G C GIMAP7 Missense_Mutation p.C78S 0.07 deleterious(0.04) possibly_damaging(0.732) TCGA-MV-A51V-01 7 150488659 150488659 G A TMEM176B Missense_Mutation p.S258L 0.16 deleterious(0) probably_damaging(0.981) TCGA-MV-A51V-01 7 150761792 150761792 G A SLC4A2 Missense_Mutation p.E133K 0.18 tolerated_low_confidence(0.25) benign(0.079) TCGA-MV-A51V-01 7 151705004 151705004 G C GALNTL5 Missense_Mutation p.R334T 0.12 deleterious(0.03) benign(0) TCGA-MV-A51V-01 7 1517480 1517480 G C INTS1 Missense_Mutation p.P1575A 0.12 tolerated_low_confidence(0.11) benign(0.003) TCGA-MV-A51V-01 7 151848063 151848063 C G KMT2C Missense_Mutation p.E4232D 0.09 possibly_damaging(0.491) TCGA-MV-A51V-01 7 151873749 151873749 G A KMT2C Missense_Mutation p.S2930L 0.18 benign(0.003) TCGA-MV-A51V-01 7 151874020 151874020 C T KMT2C Missense_Mutation p.E2840K 0.21 benign(0.004) TCGA-MV-A51V-01 7 151874140 151874140 C A KMT2C Nonsense_Mutation p.E2800* 0.25 TCGA-MV-A51V-01 7 151874302 151874302 C T KMT2C Missense_Mutation p.D2746N 0.23 probably_damaging(0.999) TCGA-MV-A51V-01 7 152480294 152480294 G A ACTR3B Missense_Mutation p.G23S 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-MV-A51V-01 7 21469531 21469531 C G SP4 Missense_Mutation p.Q250E 0.25 deleterious(0) benign(0.021) TCGA-MV-A51V-01 7 21469712 21469712 C T SP4 Missense_Mutation p.S310F 0.39 deleterious(0.01) benign(0.352) TCGA-MV-A51V-01 7 21856293 21856293 T A DNAH11 Missense_Mutation p.L3521Q 0.09 probably_damaging(1) TCGA-MV-A51V-01 7 23145628 23145628 G A KLHL7 5'UTR 0.33 TCGA-MV-A51V-01 7 23240304 23240304 G C NUPL2 Missense_Mutation p.K404N 0.30 deleterious(0) possibly_damaging(0.805) TCGA-MV-A51V-01 7 24742422 24742422 C G DFNA5 Missense_Mutation p.G405A 0.11 tolerated(0.26) benign(0.29) TCGA-MV-A51V-01 7 24742448 24742453 CATTTC AATTT DFNA5 Splice_Site p.X395_splice 0.09 TCGA-MV-A51V-01 7 24747806 24747806 C G DFNA5 Missense_Mutation p.L310F 0.22 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 2577861 2577861 C T BRAT1 Missense_Mutation p.E770K 0.11 tolerated(0.12) benign(0.006) TCGA-MV-A51V-01 7 26225334 26225334 C G NFE2L3 Missense_Mutation p.I672M 0.07 deleterious(0.01) benign(0.005) TCGA-MV-A51V-01 7 28848986 28848986 G A CREB5 Silent p.L403L 0.09 TCGA-MV-A51V-01 7 28997378 28997378 G C AC005013.5 RNA 0.09 TCGA-MV-A51V-01 7 30491074 30491074 G C NOD1 Missense_Mutation p.I653M 0.10 deleterious(0) benign(0.261) TCGA-MV-A51V-01 7 30643153 30643153 G A GARS Missense_Mutation p.E234K 0.21 deleterious(0.03) benign(0.271) TCGA-MV-A51V-01 7 30651839 30651839 C T GARS Nonsense_Mutation p.R337* 0.15 TCGA-MV-A51V-01 7 43484544 43484544 C G HECW1 Silent p.L591L 0.17 TCGA-MV-A51V-01 7 43916256 43916256 C T URGCP 3'UTR 0.12 TCGA-MV-A51V-01 7 44121992 44121992 C T POLM Missense_Mutation p.D16N 0.17 tolerated(0.51) benign(0.002) TCGA-MV-A51V-01 7 44924367 44924367 C T PURB Missense_Mutation p.G194E 0.08 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 44924398 44924398 C G PURB Missense_Mutation p.D184H 0.12 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 45725633 45725633 C T ADCY1 Missense_Mutation p.R716C 0.28 deleterious(0.05) benign(0.302) TCGA-MV-A51V-01 7 47930332 47930332 G C PKD1L1 Missense_Mutation p.S828C 0.10 deleterious(0.04) probably_damaging(0.962) TCGA-MV-A51V-01 7 48018032 48018032 G A HUS1 Silent p.L113L 0.13 TCGA-MV-A51V-01 7 48313615 48313615 C G ABCA13 Nonsense_Mutation p.S1451* 0.15 TCGA-MV-A51V-01 7 48349690 48349690 G C ABCA13 Silent p.L3156L 0.17 TCGA-MV-A51V-01 7 48390314 48390314 C G ABCA13 Missense_Mutation p.L3427V 0.12 benign(0.3) TCGA-MV-A51V-01 7 50571758 50571758 C G DDC Splice_Site p.X239_splice 0.21 TCGA-MV-A51V-01 7 51092896 51092896 G C COBL Missense_Mutation p.F1226L 0.12 tolerated(0.47) benign(0.001) TCGA-MV-A51V-01 7 51094308 51094308 C G COBL Missense_Mutation p.E1147Q 0.10 deleterious(0.01) probably_damaging(0.91) TCGA-MV-A51V-01 7 51287548 51287548 G A COBL Silent p.L45L 0.08 TCGA-MV-A51V-01 7 55224487 55224487 A G EGFR Missense_Mutation p.Q390R 0.21 tolerated(0.09) benign(0) TCGA-MV-A51V-01 7 57528463 57528463 C T ZNF716 Missense_Mutation p.S99L 0.16 deleterious(0.04) benign(0.107) TCGA-MV-A51V-01 7 590102 590102 G A PRKAR1B Nonsense_Mutation p.Q371* 0.21 TCGA-MV-A51V-01 7 6042206 6042206 G A PMS2 Missense_Mutation p.H139Y 0.22 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 64530036 64530036 C G SNORA22 3'Flank 0.25 TCGA-MV-A51V-01 7 64601699 64601699 C G INTS4L1 RNA 0.22 TCGA-MV-A51V-01 7 66482956 66482956 C T TYW1 Silent p.F229F 0.21 TCGA-MV-A51V-01 7 66482977 66482977 C T TYW1 Silent p.F236F 0.15 TCGA-MV-A51V-01 7 6732258 6732258 G A ZNF12 Silent p.F105F 0.12 TCGA-MV-A51V-01 7 72040517 72040517 C T TYW1B Missense_Mutation p.R284K 0.20 tolerated(0.14) probably_damaging(0.998) TCGA-MV-A51V-01 7 72419340 72419340 G C POM121 3'UTR 0.09 TCGA-MV-A51V-01 7 73770796 73770796 G A CLIP2 Missense_Mutation p.R287H 0.06 deleterious(0) probably_damaging(0.975) TCGA-MV-A51V-01 7 74166461 74166461 C G GTF2I Nonsense_Mutation p.S839* 0.35 TCGA-MV-A51V-01 7 74171165 74171165 G C GTF2I Missense_Mutation p.Q956H 0.42 deleterious(0.01) possibly_damaging(0.45) TCGA-MV-A51V-01 7 7514281 7514281 C G COL28A1 Missense_Mutation p.G418A 0.27 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 7 75191402 75191402 G C HIP1 Missense_Mutation p.Q365E 0.08 tolerated(0.18) benign(0.019) TCGA-MV-A51V-01 7 77326035 77326035 C G RSBN1L Silent p.P83P 0.55 TCGA-MV-A51V-01 7 77530085 77530085 G C PHTF2 Missense_Mutation p.D58H 0.09 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 7 82387946 82387946 C G PCLO Missense_Mutation p.R5125T 0.10 unknown(0) TCGA-MV-A51V-01 7 84694869 84694869 C G SEMA3D Splice_Site p.X197_splice 0.14 TCGA-MV-A51V-01 7 87465546 87465546 C G SLC25A40 3'UTR 0.19 TCGA-MV-A51V-01 7 87757962 87757962 G C ADAM22 Missense_Mutation p.E242Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 7 89793863 89793863 G C STEAP1 Missense_Mutation p.D279H 0.08 deleterious(0.02) benign(0.248) TCGA-MV-A51V-01 7 89983834 89983834 C A GTPBP10 Nonsense_Mutation p.S97* 0.32 TCGA-MV-A51V-01 7 91687618 91687618 G A AKAP9 Intron 0.12 TCGA-MV-A51V-01 7 91708606 91708606 C G AKAP9 Missense_Mutation p.Q2387E 0.10 benign(0.227) TCGA-MV-A51V-01 7 91726366 91726366 G C AKAP9 Missense_Mutation p.E3365Q 0.15 probably_damaging(0.999) TCGA-MV-A51V-01 7 91852209 91852209 C G KRIT1 Missense_Mutation p.Q446H 0.13 deleterious(0.01) probably_damaging(0.982) TCGA-MV-A51V-01 7 94940805 94940805 G A PON1 Missense_Mutation p.S152L 0.13 deleterious(0) probably_damaging(0.928) TCGA-MV-A51V-01 7 97814395 97814395 C T LMTK2 Missense_Mutation p.S275F 0.15 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 7 97862214 97862214 C G TECPR1 Missense_Mutation p.Q581H 0.13 deleterious(0.04) probably_damaging(0.984) TCGA-MV-A51V-01 7 98951563 98951563 G T ARPC1A Nonsense_Mutation p.E178* 0.19 TCGA-MV-A51V-01 7 99129890 99129890 G C ZKSCAN5 3'UTR 0.14 TCGA-MV-A51V-01 7 99706121 99706121 C T TAF6 Missense_Mutation p.D480N 0.09 tolerated(0.07) probably_damaging(0.996) TCGA-MV-A51V-01 7 99778166 99778166 C G STAG3 5'UTR 0.22 TCGA-MV-A51V-01 8 101020674 101020674 C G RGS22 Missense_Mutation p.E764Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 8 103841608 103841608 C A AZIN1 Missense_Mutation p.G376V 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-MV-A51V-01 8 10468647 10468647 C G RP1L1 Silent p.L987L 0.54 TCGA-MV-A51V-01 8 10555266 10555266 G C C8orf74 Missense_Mutation p.Q133H 0.14 deleterious(0.01) probably_damaging(0.922) TCGA-MV-A51V-01 8 106801020 106801020 G C ZFPM2 Missense_Mutation p.D203H 0.10 tolerated(0.17) possibly_damaging(0.463) TCGA-MV-A51V-01 8 124140692 124140692 G C TBC1D31 Missense_Mutation p.D686H 0.08 deleterious(0) possibly_damaging(0.573) TCGA-MV-A51V-01 8 124154644 124154644 G C TBC1D31 Missense_Mutation p.R928T 0.14 deleterious(0.02) possibly_damaging(0.501) TCGA-MV-A51V-01 8 125565696 125565696 C G MTSS1 Missense_Mutation p.G602A 0.08 tolerated(0.39) probably_damaging(0.999) TCGA-MV-A51V-01 8 130760918 130760918 G C GSDMC Silent p.L452L 0.11 TCGA-MV-A51V-01 8 132051980 132051980 G A ADCY8 Silent p.H200H 0.16 TCGA-MV-A51V-01 8 143994805 143994805 G C CYP11B2 Missense_Mutation p.I339M 0.12 deleterious(0.02) benign(0.018) TCGA-MV-A51V-01 8 144659478 144659478 C T NAPRT1 Missense_Mutation p.D177N 0.54 tolerated(0.11) benign(0.176) TCGA-MV-A51V-01 8 144940135 144940135 G A EPPK1 3'UTR 0.20 TCGA-MV-A51V-01 8 145106228 145106228 C G OPLAH Nonstop_Mutation p.*1289Sext*? 0.23 TCGA-MV-A51V-01 8 145161351 145161351 G A MAF1 Missense_Mutation p.E162K 0.12 tolerated(0.12) possibly_damaging(0.643) TCGA-MV-A51V-01 8 17053089 17053089 G A ZDHHC2 Missense_Mutation p.R110Q 0.83 tolerated(0.11) possibly_damaging(0.819) TCGA-MV-A51V-01 8 2037890 2037890 G C MYOM2 Silent p.P568P 0.14 TCGA-MV-A51V-01 8 21986592 21986592 G A HR Missense_Mutation p.P31L 0.86 tolerated_low_confidence(0.86) benign(0.008) TCGA-MV-A51V-01 8 22862930 22862930 C T RHOBTB2 Silent p.L102L 0.16 TCGA-MV-A51V-01 8 32505449 32505449 C G NRG1 Intron 0.08 TCGA-MV-A51V-01 8 32621438 32621438 G C NRG1 Missense_Mutation p.V486L 0.09 tolerated(0.7) probably_damaging(0.948) TCGA-MV-A51V-01 8 35616883 35616883 G C UNC5D Missense_Mutation p.E737Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 8 38940217 38940217 C G ADAM9 Missense_Mutation p.Q647E 0.11 tolerated(0.6) benign(0.002) TCGA-MV-A51V-01 8 41547811 41547811 C T ANK1 Silent p.A1387A 0.17 TCGA-MV-A51V-01 8 54147473 54147473 C T OPRK1 Missense_Mutation p.M152I 0.09 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 8 56436295 56436295 G C XKR4 Missense_Mutation p.A488P 0.10 deleterious(0) benign(0.04) TCGA-MV-A51V-01 8 61765713 61765713 G A CHD7 Silent p.L2143L 0.46 TCGA-MV-A51V-01 8 68030493 68030493 C G CSPP1 Missense_Mutation p.L498V 0.22 tolerated(0.56) benign(0.101) TCGA-MV-A51V-01 8 69005847 69005847 C A PREX2 Missense_Mutation p.S753Y 0.21 tolerated_low_confidence(1) benign(0.004) TCGA-MV-A51V-01 8 72935152 72935152 G A TRPA1 Missense_Mutation p.L1117F 0.45 tolerated_low_confidence(0.26) benign(0.036) TCGA-MV-A51V-01 8 73849887 73849887 G C KCNB2 Missense_Mutation p.R766T 0.11 tolerated_low_confidence(0.11) benign(0.002) TCGA-MV-A51V-01 8 77616899 77616899 C T ZFHX4 Silent p.I192I 0.18 TCGA-MV-A51V-01 8 86118439 86118439 C G E2F5 Missense_Mutation p.I178M 0.25 deleterious(0) benign(0.41) TCGA-MV-A51V-01 8 87552521 87552521 C G CPNE3 Missense_Mutation p.L198V 0.10 tolerated(0.36) benign(0.26) TCGA-MV-A51V-01 8 90802607 90802607 C T RIPK2 Missense_Mutation p.S529L 0.10 tolerated_low_confidence(0.16) benign(0) TCGA-MV-A51V-01 8 95172243 95172243 C G CDH17 Missense_Mutation p.D503H 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-MV-A51V-01 8 95895114 95895114 C A CCNE2 Missense_Mutation p.D280Y 0.07 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 8 9620725 9620725 G C TNKS Missense_Mutation p.D1115H 0.20 tolerated(0.09) probably_damaging(0.997) TCGA-MV-A51V-01 8 96281399 96281399 C A C8orf37 Nonsense_Mutation p.E7* 0.17 TCGA-MV-A51V-01 8 98731305 98731305 G C MTDH Missense_Mutation p.R470T 0.47 tolerated(0.21) benign(0.003) TCGA-MV-A51V-01 9 100105692 100105692 G A CCDC180 Missense_Mutation p.G826E 0.11 deleterious(0.02) benign(0.002) TCGA-MV-A51V-01 9 100128892 100128892 G C CCDC180 Missense_Mutation p.D1411H 0.09 deleterious(0) benign(0.013) TCGA-MV-A51V-01 9 107367387 107367387 G A OR13C2 Silent p.I174I 0.08 TCGA-MV-A51V-01 9 107578604 107578604 G C ABCA1 Silent p.L1186L 0.16 TCGA-MV-A51V-01 9 108467964 108467964 C G TMEM38B Missense_Mutation p.L67V 0.08 tolerated(0.36) benign(0.009) TCGA-MV-A51V-01 9 111624743 111624743 G A ACTL7A Silent p.T47T 0.18 TCGA-MV-A51V-01 9 111640907 111640907 C G IKBKAP Silent p.L1232L 0.08 TCGA-MV-A51V-01 9 112018500 112018500 C G EPB41L4B Missense_Mutation p.R282T 0.12 deleterious(0) possibly_damaging(0.872) TCGA-MV-A51V-01 9 114148667 114148667 G A KIAA0368 Nonsense_Mutation p.R1351* 0.20 TCGA-MV-A51V-01 9 114188098 114188098 T G KIAA0368 Missense_Mutation p.D532A 0.15 deleterious(0.01) possibly_damaging(0.46) TCGA-MV-A51V-01 9 115593102 115593102 G C SNX30 Missense_Mutation p.R186T 0.14 deleterious(0) probably_damaging(0.996) TCGA-MV-A51V-01 9 116152709 116152709 C G ALAD Silent p.L182L 0.08 TCGA-MV-A51V-01 9 119488195 119488195 C G ASTN2 Missense_Mutation p.E836D 0.20 tolerated(0.55) unknown(0) TCGA-MV-A51V-01 9 119583056 119583056 C G ASTN2 Missense_Mutation p.E632Q 0.09 tolerated(0.29) unknown(0) TCGA-MV-A51V-01 9 122000969 122000969 G A BRINP1 Missense_Mutation p.L217F 0.11 deleterious(0) possibly_damaging(0.894) TCGA-MV-A51V-01 9 123007254 123007254 C T MIR147A 3'Flank 0.17 TCGA-MV-A51V-01 9 123171459 123171459 C G CDK5RAP2 Missense_Mutation p.R1517T 0.09 tolerated(0.3) possibly_damaging(0.879) TCGA-MV-A51V-01 9 125042729 125042729 G C MRRF Silent p.G64G 0.23 TCGA-MV-A51V-01 9 125674274 125674274 C T ZBTB6 Silent p.L26L 0.15 TCGA-MV-A51V-01 9 125832652 125832652 G C RABGAP1 Missense_Mutation p.E644D 0.17 tolerated(0.18) probably_damaging(0.989) TCGA-MV-A51V-01 9 127764253 127764253 C G SCAI Missense_Mutation p.D402H 0.07 tolerated(0.05) possibly_damaging(0.646) TCGA-MV-A51V-01 9 130432216 130432216 G C STXBP1 Missense_Mutation p.K314N 0.06 deleterious(0.02) possibly_damaging(0.607) TCGA-MV-A51V-01 9 130710381 130710381 G A FAM102A Silent p.P195P 0.18 TCGA-MV-A51V-01 9 131024910 131024910 C G GOLGA2 Missense_Mutation p.A329P 0.10 tolerated(0.07) possibly_damaging(0.708) TCGA-MV-A51V-01 9 131095147 131095147 G A COQ4 Nonsense_Mutation p.W184* 0.12 TCGA-MV-A51V-01 9 131339779 131339779 C T SPTAN1 Missense_Mutation p.S360L 0.15 deleterious(0) probably_damaging(0.925) TCGA-MV-A51V-01 9 131456007 131456007 G T SET Missense_Mutation p.D208Y 0.10 deleterious(0) probably_damaging(0.982) TCGA-MV-A51V-01 9 131765718 131765718 C T NUP188 Silent p.L1473L 0.10 TCGA-MV-A51V-01 9 132400323 132400323 G C ASB6 Missense_Mutation p.Q338E 0.14 tolerated(0.67) benign(0.031) TCGA-MV-A51V-01 9 132618639 132618639 G A USP20 Silent p.Q45Q 0.16 TCGA-MV-A51V-01 9 133760866 133760866 C G ABL1 Silent p.L1082L 0.15 TCGA-MV-A51V-01 9 133901821 133901821 G A LAMC3 Missense_Mutation p.E175K 0.11 tolerated(0.16) possibly_damaging(0.625) TCGA-MV-A51V-01 9 134350499 134350499 C G PRRC2B Missense_Mutation p.L995V 0.19 tolerated(0.33) benign(0.031) TCGA-MV-A51V-01 9 134379656 134379656 G C POMT1 Missense_Mutation p.L17F 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-MV-A51V-01 9 135374763 135374763 C T C9orf171 Silent p.I136I 0.11 TCGA-MV-A51V-01 9 135945930 135945930 G C CEL Missense_Mutation p.D460H 0.31 deleterious(0) probably_damaging(0.989) TCGA-MV-A51V-01 9 136501793 136501793 C G DBH Silent p.L100L 0.17 TCGA-MV-A51V-01 9 137779144 137779144 G C FCN2 Silent p.L275L 0.37 TCGA-MV-A51V-01 9 138395755 138395755 G A MRPS2 Missense_Mutation p.V223M 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-MV-A51V-01 9 139272390 139272390 G T SNAPC4 Missense_Mutation p.L1297M 0.09 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 9 139701241 139701241 G C CCDC183 Missense_Mutation p.L437F 0.09 deleterious(0.02) benign(0.371) TCGA-MV-A51V-01 9 139910499 139910499 C G ABCA2 Missense_Mutation p.D1078H 0.07 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 9 17464510 17464510 G C CNTLN Missense_Mutation p.E1140D 0.09 deleterious(0) probably_damaging(0.998) TCGA-MV-A51V-01 9 17502605 17502605 G C CNTLN Missense_Mutation p.K1392N 0.25 deleterious(0.02) benign(0.06) TCGA-MV-A51V-01 9 19058328 19058328 G C HAUS6 Missense_Mutation p.L813V 0.19 tolerated(0.68) benign(0.117) TCGA-MV-A51V-01 9 19058381 19058381 G C HAUS6 Nonsense_Mutation p.S795* 0.16 TCGA-MV-A51V-01 9 19332152 19332152 G A DENND4C Missense_Mutation p.M810I 0.09 deleterious(0) probably_damaging(0.958) TCGA-MV-A51V-01 9 19352073 19352073 G C DENND4C Missense_Mutation p.E1451Q 0.13 tolerated(0.32) possibly_damaging(0.617) TCGA-MV-A51V-01 9 19376499 19376499 C G RPS6 Missense_Mutation p.R216T 0.07 deleterious(0) probably_damaging(0.944) TCGA-MV-A51V-01 9 20346572 20346572 T G MLLT3 Missense_Mutation p.I526L 0.12 deleterious(0) benign(0.241) TCGA-MV-A51V-01 9 2104043 2104043 G C SMARCA2 Missense_Mutation p.D1056H 0.28 possibly_damaging(0.861) TCGA-MV-A51V-01 9 21304748 21304748 C G IFNA5 Missense_Mutation p.E170Q 0.05 deleterious(0.01) probably_damaging(0.917) TCGA-MV-A51V-01 9 21304814 21304814 G C IFNA5 Missense_Mutation p.Q148E 0.14 tolerated(0.12) benign(0.018) TCGA-MV-A51V-01 9 3248113 3248113 G C RFX3 Silent p.L629L 0.17 TCGA-MV-A51V-01 9 32635064 32635064 C T TAF1L Missense_Mutation p.D172N 0.48 tolerated_low_confidence(0.14) benign(0.244) TCGA-MV-A51V-01 9 33290559 33290559 C G NFX1 5'UTR 0.06 TCGA-MV-A51V-01 9 33465266 33465266 C T NOL6 Missense_Mutation p.E874K 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-MV-A51V-01 9 34489412 34489412 G C DNAI1 Missense_Mutation p.G118A 0.09 tolerated(1) benign(0.004) TCGA-MV-A51V-01 9 34971464 34971464 G A KIAA1045 Missense_Mutation p.E57K 0.43 tolerated(0.17) probably_damaging(0.93) TCGA-MV-A51V-01 9 35045958 35045958 C T C9orf131 3'UTR 0.27 TCGA-MV-A51V-01 9 35310567 35310567 G A UNC13B Missense_Mutation p.E289K 0.08 tolerated_low_confidence(0.06) benign(0.038) TCGA-MV-A51V-01 9 35563793 35563793 G C FAM166B Silent p.L11L 0.16 TCGA-MV-A51V-01 9 35700302 35700302 G A TLN1 Silent p.I2182I 0.07 TCGA-MV-A51V-01 9 35811780 35811780 G T SPAG8 Missense_Mutation p.S88Y 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-MV-A51V-01 9 36060127 36060127 G T RECK Missense_Mutation p.W82C 0.10 deleterious(0) probably_damaging(0.997) TCGA-MV-A51V-01 9 40772770 40772770 G A ZNF658 Silent p.F835F 0.16 TCGA-MV-A51V-01 9 40774335 40774335 G C ZNF658 Missense_Mutation p.Q314E 0.15 tolerated(0.18) benign(0.073) TCGA-MV-A51V-01 9 5126799 5126799 G T JAK2 3'UTR 0.40 TCGA-MV-A51V-01 9 6007270 6007270 C G KIAA2026 Missense_Mutation p.G173A 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-MV-A51V-01 9 6007356 6007356 C G KIAA2026 Missense_Mutation p.E144D 0.27 tolerated(0.08) benign(0.176) TCGA-MV-A51V-01 9 6013726 6013726 G C RANBP6 Missense_Mutation p.Q628E 0.10 tolerated(1) benign(0.013) TCGA-MV-A51V-01 9 6413549 6413549 C G UHRF2 Missense_Mutation p.S20C 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-MV-A51V-01 9 70177733 70177733 G C FOXD4L5 Nonsense_Mutation p.S84* 0.06 TCGA-MV-A51V-01 9 72723290 72723290 G C MAMDC2 Missense_Mutation p.M104I 0.16 tolerated(0.47) benign(0.002) TCGA-MV-A51V-01 9 74349819 74349819 C G TMEM2 Missense_Mutation p.Q432H 0.15 tolerated(0.26) benign(0.002) TCGA-MV-A51V-01 9 74355058 74355058 C A TMEM2 Silent p.G375G 0.16 TCGA-MV-A51V-01 9 75387387 75387387 G C TMC1 Missense_Mutation p.G267A 0.09 deleterious(0) possibly_damaging(0.638) TCGA-MV-A51V-01 9 77359035 77359035 G C TRPM6 Missense_Mutation p.Q1704E 0.13 tolerated(0.52) benign(0.002) TCGA-MV-A51V-01 9 86585192 86585192 C A HNRNPK Nonsense_Mutation p.E416* 0.11 TCGA-MV-A51V-01 9 89771535 89771535 G C C9orf170 Missense_Mutation p.Q72H 0.20 deleterious_low_confidence(0) benign(0.387) TCGA-MV-A51V-01 9 916765 916765 G A DMRT1 Missense_Mutation p.M275I 0.14 deleterious(0.01) benign(0.064) TCGA-MV-A51V-01 9 95033891 95033891 G T IARS Nonsense_Mutation p.S346* 0.35 TCGA-MV-A51V-01 9 95738561 95738561 C G FGD3 Nonsense_Mutation p.S8* 0.15 TCGA-MV-A51V-01 9 96000583 96000583 C G WNK2 Missense_Mutation p.I434M 0.12 unknown(0) TCGA-MV-A51V-01 9 96860668 96860668 C G PTPDC1 Missense_Mutation p.S605C 0.38 tolerated(0.07) benign(0.011) TCGA-MV-A51V-01 9 99157222 99157222 C T ZNF367 Missense_Mutation p.E192K 0.13 tolerated(0.06) benign(0.094) TCGA-MV-A51V-01 9 99266017 99266017 C G CDC14B 3'UTR 0.10 TCGA-MV-A51V-01 9 99408276 99408276 A G AAED1 Missense_Mutation p.L151P 0.14 deleterious(0) probably_damaging(0.943) TCGA-MV-A51V-01 9 99580880 99580880 C G ZNF782 Missense_Mutation p.E475D 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-MV-A51V-01 X 100086632 100086632 G C CSTF2 Missense_Mutation p.E340Q 0.10 deleterious_low_confidence(0) benign(0.062) TCGA-MV-A51V-01 X 100087722 100087722 G C CSTF2 Splice_Site p.X344_splice 0.22 TCGA-MV-A51V-01 X 100087778 100087778 G C CSTF2 Missense_Mutation p.E363Q 0.19 tolerated_low_confidence(0.12) benign(0.015) TCGA-MV-A51V-01 X 100243243 100243243 G A ARL13A Missense_Mutation p.E239K 0.57 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-MV-A51V-01 X 100402961 100402961 G C CENPI Missense_Mutation p.K635N 0.08 tolerated(0.12) benign(0.276) TCGA-MV-A51V-01 X 100531442 100531442 C G TAF7L Missense_Mutation p.D342H 0.30 tolerated(0.13) possibly_damaging(0.459) TCGA-MV-A51V-01 X 103042841 103042841 C A PLP1 Missense_Mutation p.P190T 0.09 tolerated(0.53) probably_damaging(1) TCGA-MV-A51V-01 X 103495519 103495519 C G ESX1 Missense_Mutation p.R204T 0.09 deleterious(0.03) benign(0.168) TCGA-MV-A51V-01 X 105280482 105280482 G C SERPINA7 Missense_Mutation p.Q190E 0.11 tolerated(0.19) benign(0.005) TCGA-MV-A51V-01 X 105912470 105912470 G A CXorf57 Missense_Mutation p.D783N 0.10 tolerated(0.3) benign(0.12) TCGA-MV-A51V-01 X 107316518 107316518 A C VSIG1 Missense_Mutation p.N239H 0.08 deleterious(0.03) probably_damaging(0.934) TCGA-MV-A51V-01 X 107978931 107978931 C G IRS4 Missense_Mutation p.G215A 0.45 tolerated(0.12) benign(0.1) TCGA-MV-A51V-01 X 108906542 108906542 C G ACSL4 Missense_Mutation p.E535Q 0.09 tolerated(0.39) possibly_damaging(0.576) TCGA-MV-A51V-01 X 115303994 115303994 G T AGTR2 Missense_Mutation p.R154I 0.91 deleterious(0.01) possibly_damaging(0.497) TCGA-MV-A51V-01 X 118752701 118752701 C G SEPT6 3'UTR 0.08 TCGA-MV-A51V-01 X 119513533 119513533 C G ATP1B4 3'UTR 0.23 TCGA-MV-A51V-01 X 120181660 120181660 C G GLUD2 Missense_Mutation p.S41W 0.10 deleterious_low_confidence(0.04) benign(0.012) TCGA-MV-A51V-01 X 123159715 123159715 G C STAG2 Missense_Mutation p.D24H 0.39 deleterious(0.02) possibly_damaging(0.863) TCGA-MV-A51V-01 X 123184087 123184087 G A STAG2 Nonsense_Mutation p.W315* 0.34 TCGA-MV-A51V-01 X 123697601 123697601 C T TENM1 Missense_Mutation p.R762Q 0.27 tolerated(0.2) benign(0.001) TCGA-MV-A51V-01 X 127185990 127185990 C A ACTRT1 Nonsense_Mutation p.E66* 0.48 TCGA-MV-A51V-01 X 12735697 12735697 G C FRMPD4 Missense_Mutation p.E918Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 X 12736042 12736042 G A FRMPD4 Missense_Mutation p.D1033N 0.24 deleterious_low_confidence(0.05) benign(0.002) TCGA-MV-A51V-01 X 128722903 128722903 C A OCRL Missense_Mutation p.F794L 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-MV-A51V-01 X 129215338 129215338 C A ELF4 5'UTR 0.17 TCGA-MV-A51V-01 X 130412534 130412534 C G IGSF1 Missense_Mutation p.G653R 0.11 tolerated(0.05) probably_damaging(0.991) TCGA-MV-A51V-01 X 134421478 134421478 C G ZNF75D Missense_Mutation p.R375T 0.10 deleterious(0) probably_damaging(0.987) TCGA-MV-A51V-01 X 135291436 135291436 C G FHL1 Silent p.V241V 0.27 TCGA-MV-A51V-01 X 135427824 135427824 G C GPR112 Missense_Mutation p.E653D 0.15 tolerated(0.09) benign(0.003) TCGA-MV-A51V-01 X 138914337 138914337 G A ATP11C Silent p.V4V 0.33 TCGA-MV-A51V-01 X 140969487 140969487 C T MAGEC3 Nonsense_Mutation p.Q272* 0.22 TCGA-MV-A51V-01 X 142967294 142967294 A G UBE2NL Missense_Mutation p.N31S 0.22 deleterious(0.03) benign(0.111) TCGA-MV-A51V-01 X 144905810 144905810 C T SLITRK2 Silent p.L623L 0.13 TCGA-MV-A51V-01 X 148797576 148797576 G C MAGEA11 Missense_Mutation p.E144Q 0.13 tolerated(0.11) possibly_damaging(0.462) TCGA-MV-A51V-01 X 151424363 151424363 G T GABRA3 Silent p.I146I 0.12 TCGA-MV-A51V-01 X 152034465 152034465 A G NSDHL Missense_Mutation p.I216V 0.11 tolerated(1) benign(0.009) TCGA-MV-A51V-01 X 153716929 153716929 G A SLC10A3 Silent p.I117I 0.13 TCGA-MV-A51V-01 X 153716965 153716965 G A SLC10A3 Silent p.L105L 0.11 TCGA-MV-A51V-01 X 18616648 18616648 C G CDKL5 Missense_Mutation p.Q298E 0.10 tolerated_low_confidence(0.06) benign(0.027) TCGA-MV-A51V-01 X 18822141 18822141 C G PPEF1 Silent p.L399L 0.33 TCGA-MV-A51V-01 X 19373563 19373563 G A PDHA1 Missense_Mutation p.E272K 0.64 tolerated(0.11) possibly_damaging(0.547) TCGA-MV-A51V-01 X 20043946 20043946 C G MAP7D2 Missense_Mutation p.E378Q 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-MV-A51V-01 X 22095672 22095672 C G PHEX Missense_Mutation p.S172C 0.06 deleterious(0.01) possibly_damaging(0.739) TCGA-MV-A51V-01 X 24073096 24073096 G A EIF2S3 Missense_Mutation p.G4E 0.14 tolerated_low_confidence(0.38) benign(0.001) TCGA-MV-A51V-01 X 24197771 24197771 C T ZFX Missense_Mutation p.S177L 0.31 deleterious(0.01) possibly_damaging(0.583) TCGA-MV-A51V-01 X 24229410 24229410 G C ZFX Missense_Mutation p.E779Q 0.11 tolerated(0.06) possibly_damaging(0.849) TCGA-MV-A51V-01 X 30322792 30322792 G C NR0B1 Missense_Mutation p.I439M 0.09 deleterious(0.03) probably_damaging(0.988) TCGA-MV-A51V-01 X 35974281 35974281 G A CXorf22 Missense_Mutation p.E460K 0.70 tolerated(0.13) benign(0.033) TCGA-MV-A51V-01 X 40522377 40522377 G C MED14 Missense_Mutation p.R1162G 0.12 deleterious(0) probably_damaging(0.999) TCGA-MV-A51V-01 X 47086256 47086256 C G CDK16 Silent p.L435L 0.11 TCGA-MV-A51V-01 X 47776023 47776023 C T ZNF81 Missense_Mutation p.H660Y 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-MV-A51V-01 X 48674404 48674404 C T HDAC6 Missense_Mutation p.R480C 0.67 deleterious(0.02) probably_damaging(0.972) TCGA-MV-A51V-01 X 49066425 49066425 C G CACNA1F Missense_Mutation p.D1567H 0.06 deleterious(0) benign(0.016) TCGA-MV-A51V-01 X 50659451 50659451 G C BMP15 Missense_Mutation p.Q341H 0.07 deleterious(0) probably_damaging(1) TCGA-MV-A51V-01 X 71401593 71401593 A G PIN4 Silent p.V11V 0.19 TCGA-MV-A51V-01 X 78216252 78216252 G T P2RY10 Missense_Mutation p.A79S 0.07 deleterious(0) probably_damaging(0.967) TCGA-MV-A51V-01 X 79698392 79698392 G A FAM46D Silent p.K118K 0.07 TCGA-MV-A51V-01 X 83320048 83320048 T G RPS6KA6 Silent p.S681S 0.11 TCGA-PQ-A6FI-01 10 13222580 13222580 G A MCM10 Silent p.K302K 0.71 TCGA-PQ-A6FI-01 10 135440206 135440206 G T FRG2B Missense_Mutation p.S14Y 0.06 deleterious(0.04) benign(0.027) TCGA-PQ-A6FI-01 10 15255345 15255345 C T FAM171A1 Missense_Mutation p.E748K 0.64 deleterious(0) probably_damaging(0.999) TCGA-PQ-A6FI-01 10 16970190 16970190 T A CUBN Silent p.V2079V 0.80 TCGA-PQ-A6FI-01 10 87379623 87379623 C A GRID1 Splice_Site p.X787_splice 0.59 TCGA-PQ-A6FI-01 11 117298988 117298988 G T DSCAML1 3'UTR 0.84 TCGA-PQ-A6FI-01 11 20699584 20699584 C T NELL1 Silent p.A54A 0.48 TCGA-PQ-A6FI-01 11 22848837 22848837 T C SVIP Silent p.Q45Q 0.37 TCGA-PQ-A6FI-01 11 33612854 33612854 G C KIAA1549L Silent p.V1249V 0.45 TCGA-PQ-A6FI-01 11 46397158 46397158 G A DGKZ Silent p.R817R 0.31 TCGA-PQ-A6FI-01 11 55595595 55595595 C A OR5L2 Missense_Mutation p.L301I 0.32 tolerated(0.09) benign(0.334) TCGA-PQ-A6FI-01 11 5798938 5798938 T C OR52N5 Missense_Mutation p.I309M 0.80 deleterious(0) probably_damaging(0.91) TCGA-PQ-A6FI-01 11 58605776 58605776 G A GLYATL2 Silent p.A48A 0.29 TCGA-PQ-A6FI-01 11 58978162 58978162 G A MPEG1 3'UTR 0.39 TCGA-PQ-A6FI-01 11 609574 609574 C T PHRF1 Missense_Mutation p.S1372F 0.79 tolerated(0.61) benign(0.129) TCGA-PQ-A6FI-01 11 62572858 62572858 G A NXF1 5'UTR 0.27 TCGA-PQ-A6FI-01 12 108930519 108930519 C A SART3 Missense_Mutation p.R451L 0.33 deleterious(0) possibly_damaging(0.858) TCGA-PQ-A6FI-01 12 112677704 112677704 A T HECTD4 Missense_Mutation p.C1550S 0.33 possibly_damaging(0.568) TCGA-PQ-A6FI-01 12 112696960 112696960 C A HECTD4 Missense_Mutation p.A849S 0.30 probably_damaging(0.914) TCGA-PQ-A6FI-01 12 124862827 124862827 G A NCOR2 Missense_Mutation p.S708L 0.35 unknown(0) TCGA-PQ-A6FI-01 12 126128690 126128690 G A TMEM132B Silent p.V497V 0.35 TCGA-PQ-A6FI-01 12 4835995 4835995 G T GALNT8 Missense_Mutation p.R170I 0.45 deleterious(0.01) possibly_damaging(0.643) TCGA-PQ-A6FI-01 12 49433394 49433394 G A KMT2D Nonsense_Mutation p.R2685* 0.15 TCGA-PQ-A6FI-01 12 49434307 49434307 G A KMT2D Nonsense_Mutation p.Q2416* 0.56 TCGA-PQ-A6FI-01 12 49582796 49582796 G A TUBA1A 5'UTR 0.65 TCGA-PQ-A6FI-01 12 56142754 56142754 G C GDF11 Missense_Mutation p.G277A 0.45 deleterious(0.01) benign(0.16) TCGA-PQ-A6FI-01 12 62785206 62785206 G C USP15 Missense_Mutation p.D744H 0.33 deleterious(0.05) benign(0.091) TCGA-PQ-A6FI-01 12 7091887 7091887 G T LPCAT3 Missense_Mutation p.L106I 0.23 tolerated(0.34) possibly_damaging(0.468) TCGA-PQ-A6FI-01 12 78225326 78225326 C G NAV3 Missense_Mutation p.L29V 0.26 tolerated_low_confidence(1) benign(0.023) TCGA-PQ-A6FI-01 12 8192482 8192482 G A FOXJ2 Silent p.L18L 0.34 TCGA-PQ-A6FI-01 13 28010009 28010009 G A MTIF3 Missense_Mutation p.L214F 0.82 deleterious(0.04) probably_damaging(0.981) TCGA-PQ-A6FI-01 13 48934194 48934194 C T RB1 Nonsense_Mutation p.Q217* 0.66 TCGA-PQ-A6FI-01 14 102511010 102511010 C T DYNC1H1 Silent p.A4327A 0.67 TCGA-PQ-A6FI-01 14 19553578 19553578 G A POTEG Missense_Mutation p.M54I 0.18 deleterious_low_confidence(0.03) benign(0.019) TCGA-PQ-A6FI-01 14 20020059 20020059 C T POTEM Missense_Mutation p.M54I 0.16 deleterious_low_confidence(0.02) benign(0.002) TCGA-PQ-A6FI-01 14 24035814 24035814 C T AP1G2 Missense_Mutation p.E96K 0.73 deleterious(0) probably_damaging(0.999) TCGA-PQ-A6FI-01 14 74425019 74425019 T A ENTPD5 3'Flank 0.80 TCGA-PQ-A6FI-01 15 42026780 42026780 G C MGA Missense_Mutation p.D1302H 0.22 deleterious(0.01) benign(0.021) TCGA-PQ-A6FI-01 15 59813563 59813563 G A FAM81A Missense_Mutation p.E365K 0.27 tolerated(0.65) benign(0.008) TCGA-PQ-A6FI-01 15 60741331 60741331 T C NARG2 Missense_Mutation p.Q612R 0.58 tolerated(0.39) benign(0.118) TCGA-PQ-A6FI-01 15 76073378 76073378 C T RN7SL319P 5'Flank 0.32 TCGA-PQ-A6FI-01 15 91303418 91303418 G C BLM Missense_Mutation p.E377Q 0.30 deleterious(0.02) possibly_damaging(0.771) TCGA-PQ-A6FI-01 16 20435239 20435239 C T ACSM5 Missense_Mutation p.R257W 0.40 deleterious(0.05) possibly_damaging(0.579) TCGA-PQ-A6FI-01 16 31497553 31497553 C T SLC5A2 Silent p.S177S 0.29 TCGA-PQ-A6FI-01 16 3841997 3841997 T A CREBBP Nonsense_Mutation p.K439* 0.25 TCGA-PQ-A6FI-01 16 4492322 4492322 C A DNAJA3 Missense_Mutation p.F228L 0.48 tolerated(0.34) benign(0.002) TCGA-PQ-A6FI-01 16 4852667 4852667 C G ROGDI 5'UTR 0.75 TCGA-PQ-A6FI-01 16 53671604 53671604 C T RPGRIP1L Intron 0.30 TCGA-PQ-A6FI-01 16 53671682 53671682 C G RPGRIP1L Missense_Mutation p.E1049Q 0.35 tolerated(0.05) benign(0.128) TCGA-PQ-A6FI-01 16 53679759 53679759 C G RPGRIP1L Missense_Mutation p.D821H 0.41 tolerated(0.08) possibly_damaging(0.873) TCGA-PQ-A6FI-01 16 57295921 57295921 T C PLLP Missense_Mutation p.Y66C 0.59 tolerated(0.08) benign(0.221) TCGA-PQ-A6FI-01 16 67576191 67576191 G C FAM65A Missense_Mutation p.G521A 0.41 tolerated(0.07) benign(0.071) TCGA-PQ-A6FI-01 16 744271 744271 C G FBXL16 3'UTR 0.56 TCGA-PQ-A6FI-01 16 75563511 75563511 C A CHST5 Missense_Mutation p.D258Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-PQ-A6FI-01 16 85839589 85839589 G T COX4I1 Intron 0.30 TCGA-PQ-A6FI-01 16 89337258 89337258 G C ANKRD11 Silent p.L2591L 0.54 TCGA-PQ-A6FI-01 17 14204871 14204871 C G HS3ST3B1 Silent p.L12L 0.56 TCGA-PQ-A6FI-01 17 26727562 26727562 G T SARM1 3'UTR 0.76 TCGA-PQ-A6FI-01 17 27025016 27025016 C G SUPT6H Missense_Mutation p.F1472L 0.17 deleterious(0) probably_damaging(0.967) TCGA-PQ-A6FI-01 17 34199431 34199431 G T CCL5 Missense_Mutation p.P76T 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-PQ-A6FI-01 17 37213356 37213356 G A CTD-2206N4.4 RNA 0.46 TCGA-PQ-A6FI-01 17 42164806 42164806 C T HDAC5 Missense_Mutation p.E621K 0.74 tolerated(0.5) probably_damaging(0.979) TCGA-PQ-A6FI-01 17 42164893 42164893 C G HDAC5 Missense_Mutation p.E592Q 0.78 tolerated(0.46) possibly_damaging(0.878) TCGA-PQ-A6FI-01 17 5298251 5298251 A G NUP88 Missense_Mutation p.F448L 0.70 tolerated(0.28) benign(0.02) TCGA-PQ-A6FI-01 17 56400389 56400389 C G BZRAP1 Silent p.L372L 0.29 TCGA-PQ-A6FI-01 17 72436960 72436960 G T GPRC5C Missense_Mutation p.V394F 0.51 tolerated(0.05) benign(0.006) TCGA-PQ-A6FI-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.80 deleterious(0) probably_damaging(1) TCGA-PQ-A6FI-01 17 78882639 78882639 G T RPTOR Missense_Mutation p.Q810H 0.07 tolerated(0.2) benign(0.002) TCGA-PQ-A6FI-01 17 80014554 80014555 - C GPS1 Frame_Shift_Ins p.N430Qfs*44 0.19 TCGA-PQ-A6FI-01 17 80708415 80708415 C T FN3K Silent p.F238F 0.30 TCGA-PQ-A6FI-01 18 21529864 21529864 G A LAMA3 Missense_Mutation p.E3163K 0.25 benign(0.001) TCGA-PQ-A6FI-01 19 12902990 12902990 C T JUNB Silent p.F135F 0.36 TCGA-PQ-A6FI-01 19 14629193 14629193 C T DNAJB1 5'UTR 0.36 TCGA-PQ-A6FI-01 19 14952164 14952164 G A OR7A10 Missense_Mutation p.H176Y 0.38 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-PQ-A6FI-01 19 15354223 15354223 C T BRD4 Missense_Mutation p.R886Q 0.41 benign(0.238) TCGA-PQ-A6FI-01 19 22154573 22154573 T A ZNF208 Missense_Mutation p.E1088V 0.35 tolerated(0.19) probably_damaging(0.942) TCGA-PQ-A6FI-01 19 2934747 2934747 A C ZNF77 Silent p.T126T 0.37 TCGA-PQ-A6FI-01 19 34843663 34843663 A C KIAA0355 Missense_Mutation p.S1006R 0.30 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-PQ-A6FI-01 19 36210956 36210956 A T KMT2B Missense_Mutation p.Q236L 0.24 unknown(0) TCGA-PQ-A6FI-01 19 39963695 39963695 T C SUPT5H Silent p.R733R 0.17 TCGA-PQ-A6FI-01 19 41062014 41062014 T G SPTBN4 Silent p.S1703S 0.38 TCGA-PQ-A6FI-01 19 42598045 42598045 G C POU2F2 Silent p.V378V 0.32 TCGA-PQ-A6FI-01 19 43757762 43757762 C G PSG9 Nonstop_Mutation p.*427Sext*7 0.50 TCGA-PQ-A6FI-01 19 45912907 45912907 G A ERCC1 3'Flank 0.36 TCGA-PQ-A6FI-01 19 47769969 47769969 C T CCDC9 Silent p.I274I 0.56 TCGA-PQ-A6FI-01 19 50245163 50245163 C A TSKS Missense_Mutation p.Q492H 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-PQ-A6FI-01 19 53669214 53669214 G A ZNF665 Missense_Mutation p.H177Y 0.35 tolerated(0.13) benign(0.245) TCGA-PQ-A6FI-01 19 57325345 57325345 C G PEG3 Missense_Mutation p.D1489H 0.36 deleterious(0.04) probably_damaging(0.994) TCGA-PQ-A6FI-01 19 9076877 9076877 C T MUC16 Silent p.A3523A 0.41 TCGA-PQ-A6FI-01 1 100459156 100459156 C G SLC35A3 Missense_Mutation p.Q16E 0.77 deleterious(0) probably_damaging(0.983) TCGA-PQ-A6FI-01 1 11087114 11087114 C G MASP2 Missense_Mutation p.R630T 0.74 tolerated(0.57) benign(0.01) TCGA-PQ-A6FI-01 1 144879302 144879302 G C PDE4DIP Nonsense_Mutation p.S1383* 0.15 TCGA-PQ-A6FI-01 1 145457080 145457080 C T POLR3GL Missense_Mutation p.V161I 0.65 tolerated(0.19) benign(0.067) TCGA-PQ-A6FI-01 1 154108407 154108407 C G NUP210L Missense_Mutation p.D298H 0.15 deleterious(0) possibly_damaging(0.569) TCGA-PQ-A6FI-01 1 155182338 155182338 G A MTX1 Missense_Mutation p.E312K 0.60 tolerated(0.61) benign(0.362) TCGA-PQ-A6FI-01 1 155184410 155184410 G A MTX1 3'Flank 0.55 TCGA-PQ-A6FI-01 1 155935540 155935540 C A ARHGEF2 Nonsense_Mutation p.E118* 0.16 TCGA-PQ-A6FI-01 1 162829299 162829299 C T C1orf110 Silent p.L46L 0.55 TCGA-PQ-A6FI-01 1 17413113 17413113 G A PADI2 Missense_Mutation p.A246V 0.75 tolerated(0.29) possibly_damaging(0.621) TCGA-PQ-A6FI-01 1 182850427 182850427 G C DHX9 Missense_Mutation p.A885P 0.23 deleterious(0) probably_damaging(0.992) TCGA-PQ-A6FI-01 1 212965252 212965252 C T TATDN3 5'UTR 0.51 TCGA-PQ-A6FI-01 1 214558118 214558119 - T PTPN14 Frame_Shift_Ins p.H360Qfs*4 0.49 TCGA-PQ-A6FI-01 1 220870053 220870053 G A C1orf115 Missense_Mutation p.V137M 0.18 tolerated(0.12) possibly_damaging(0.791) TCGA-PQ-A6FI-01 1 235747078 235747078 C T GNG4 Missense_Mutation p.E21K 0.56 deleterious(0.05) probably_damaging(0.93) TCGA-PQ-A6FI-01 1 237947294 237947294 C G RYR2 Missense_Mutation p.I4094M 0.82 probably_damaging(0.999) TCGA-PQ-A6FI-01 1 33631078 33631078 C G TRIM62 Missense_Mutation p.E166D 0.73 tolerated(0.08) benign(0.002) TCGA-PQ-A6FI-01 1 54562207 54562207 C G TCEANC2 3'UTR 0.83 TCGA-PQ-A6FI-01 1 92711252 92711252 C G C1orf146 3'UTR 0.60 TCGA-PQ-A6FI-01 20 17462778 17462778 G A PCSK2 3'UTR 0.41 TCGA-PQ-A6FI-01 20 24565601 24565601 G C SYNDIG1 Missense_Mutation p.G197A 0.46 deleterious(0) probably_damaging(1) TCGA-PQ-A6FI-01 20 25281436 25281436 C T ABHD12 Intron 0.46 TCGA-PQ-A6FI-01 20 3736222 3736222 C A C20orf27 Missense_Mutation p.E90D 0.45 deleterious(0.01) probably_damaging(0.972) TCGA-PQ-A6FI-01 20 42815237 42815237 C T JPH2 Missense_Mutation p.E37K 0.53 deleterious(0) probably_damaging(0.981) TCGA-PQ-A6FI-01 20 60791856 60791857 - GCT HRH3 In_Frame_Ins p.S182dup 0.47 TCGA-PQ-A6FI-01 20 61510942 61510942 G A DIDO1 Silent p.N2122N 0.43 TCGA-PQ-A6FI-01 21 10863024 10863024 C A IGHV1OR21-1 Missense_Mutation p.S107Y 0.09 deleterious(0.03) benign(0.131) TCGA-PQ-A6FI-01 21 32638764 32638764 G C TIAM1 Missense_Mutation p.I175M 0.26 tolerated_low_confidence(1) benign(0.014) TCGA-PQ-A6FI-01 21 45563196 45563196 G C C21orf33 Missense_Mutation p.E211Q 0.21 tolerated(0.5) benign(0.057) TCGA-PQ-A6FI-01 21 46306331 46306331 G A ITGB2 Silent p.F754F 0.26 TCGA-PQ-A6FI-01 22 18075303 18075303 G C ATP6V1E1 3'UTR 0.25 TCGA-PQ-A6FI-01 22 37322030 37322030 G A CSF2RB Missense_Mutation p.D68N 0.35 tolerated(0.38) benign(0.001) TCGA-PQ-A6FI-01 22 38040915 38040915 G C SH3BP1 Silent p.L242L 0.49 TCGA-PQ-A6FI-01 22 46652387 46652387 C T PKDREJ 3'UTR 0.39 TCGA-PQ-A6FI-01 2 152380907 152380907 C T NEB Missense_Mutation p.R7466H 0.28 probably_damaging(1) TCGA-PQ-A6FI-01 2 182785321 182785321 C T SSFA2 Intron 0.21 TCGA-PQ-A6FI-01 2 197080654 197080654 G T HECW2 Silent p.L1514L 0.33 TCGA-PQ-A6FI-01 2 203075522 203075522 G A SUMO1 Missense_Mutation p.P58L 0.59 deleterious(0) benign(0.048) TCGA-PQ-A6FI-01 2 216965108 216965108 G A TMEM169 Missense_Mutation p.R246Q 0.56 tolerated(0.32) benign(0.037) TCGA-PQ-A6FI-01 2 224866633 224866633 G A SERPINE2 Silent p.S7S 0.16 TCGA-PQ-A6FI-01 2 28464251 28464251 A G BRE Missense_Mutation p.H281R 0.53 tolerated(0.67) benign(0.013) TCGA-PQ-A6FI-01 2 55543247 55543247 C G CCDC88A Silent p.L1249L 0.39 TCGA-PQ-A6FI-01 2 60688033 60688033 G A BCL11A Missense_Mutation p.P672S 0.58 deleterious(0.05) benign(0.403) TCGA-PQ-A6FI-01 2 61528088 61528088 C T USP34 Missense_Mutation p.E1376K 0.22 tolerated(0.11) benign(0.035) TCGA-PQ-A6FI-01 2 64160958 64160958 T C VPS54 Missense_Mutation p.I530V 0.51 tolerated(0.84) benign(0) TCGA-PQ-A6FI-01 2 79348720 79348720 C A REG1A Silent p.R33R 0.51 TCGA-PQ-A6FI-01 2 96944282 96944282 C T SNRNP200 Intron 0.55 TCGA-PQ-A6FI-01 3 113128116 113128116 G C WDR52 Missense_Mutation p.L243V 0.25 deleterious(0) probably_damaging(0.92) TCGA-PQ-A6FI-01 3 12200210 12200210 G A TIMP4 Missense_Mutation p.S44L 0.68 deleterious(0.02) probably_damaging(0.994) TCGA-PQ-A6FI-01 3 134911634 134911634 T C EPHB1 Missense_Mutation p.M700T 0.31 deleterious(0) probably_damaging(0.991) TCGA-PQ-A6FI-01 3 143691549 143691549 C A C3orf58 Silent p.I125I 0.16 TCGA-PQ-A6FI-01 3 170198437 170198437 C G SLC7A14 Missense_Mutation p.R545T 0.21 deleterious(0.03) possibly_damaging(0.694) TCGA-PQ-A6FI-01 3 178968995 178968995 C G KCNMB3 5'UTR 0.52 TCGA-PQ-A6FI-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.35 deleterious_low_confidence(0.02) benign(0.001) TCGA-PQ-A6FI-01 3 30715657 30715658 - TT TGFBR2 Frame_Shift_Ins p.E465Lfs*19 0.43 TCGA-PQ-A6FI-01 3 44489378 44489378 T A ZNF445 Missense_Mutation p.K595N 0.73 tolerated(0.23) benign(0.403) TCGA-PQ-A6FI-01 3 44612004 44612004 A G ZKSCAN7 Missense_Mutation p.K468E 0.80 tolerated(0.25) probably_damaging(0.974) TCGA-PQ-A6FI-01 3 52387194 52387194 C T DNAH1 Missense_Mutation p.R1035C 0.87 possibly_damaging(0.892) TCGA-PQ-A6FI-01 3 66434438 66434438 G A LRIG1 Missense_Mutation p.A683V 0.73 deleterious(0) possibly_damaging(0.857) TCGA-PQ-A6FI-01 3 66434439 66434439 C G LRIG1 Missense_Mutation p.A683P 0.74 deleterious(0) probably_damaging(0.998) TCGA-PQ-A6FI-01 3 98217146 98217146 G A OR5K2 Missense_Mutation p.V208I 0.24 tolerated(0.63) benign(0.003) TCGA-PQ-A6FI-01 4 155312380 155312380 C T DCHS2 Missense_Mutation p.E24K 0.79 tolerated_low_confidence(0.9) benign(0) TCGA-PQ-A6FI-01 4 155510689 155510689 A T FGA Missense_Mutation p.F27Y 0.74 deleterious(0.01) benign(0.153) TCGA-PQ-A6FI-01 4 42064976 42065005 CGAACTATATTCTTTTCTATTTTTCAGGTA - SLC30A9 Splice_Site p.X299_splice 0.57 TCGA-PQ-A6FI-01 4 66213881 66213881 A G EPHA5 Missense_Mutation p.I850T 0.76 deleterious(0) probably_damaging(0.992) TCGA-PQ-A6FI-01 5 10261841 10261841 G C CCT5 Missense_Mutation p.R388T 0.27 deleterious(0) probably_damaging(0.999) TCGA-PQ-A6FI-01 5 121188173 121188173 A T FTMT Missense_Mutation p.Q172L 0.25 deleterious(0.01) benign(0.129) TCGA-PQ-A6FI-01 5 153149749 153149749 G C GRIA1 Missense_Mutation p.E692Q 0.24 tolerated(0.06) possibly_damaging(0.853) TCGA-PQ-A6FI-01 5 54640925 54640925 G A SKIV2L2 Missense_Mutation p.D337N 0.48 tolerated(0.5) benign(0.001) TCGA-PQ-A6FI-01 5 72333035 72333035 G A FCHO2 Missense_Mutation p.E303K 0.19 tolerated(0.08) benign(0.018) TCGA-PQ-A6FI-01 6 10586610 10586610 G A GCNT2 Intron 0.76 TCGA-PQ-A6FI-01 6 139597983 139597983 T C TXLNB Missense_Mutation p.K167R 0.13 tolerated(0.05) possibly_damaging(0.67) TCGA-PQ-A6FI-01 6 152823866 152823866 C G SYNE1 Missense_Mutation p.D264H 0.23 possibly_damaging(0.841) TCGA-PQ-A6FI-01 6 15523445 15523445 C T DTNBP1 Missense_Mutation p.E273K 0.11 deleterious(0.05) possibly_damaging(0.527) TCGA-PQ-A6FI-01 6 159262780 159262780 C T OSTCP1 RNA 0.28 TCGA-PQ-A6FI-01 6 26216650 26216650 G A HIST1H2BG Silent p.I74I 0.48 TCGA-PQ-A6FI-01 6 27783210 27783210 G - HIST1H2BM 3'UTR 0.41 TCGA-PQ-A6FI-01 6 32116918 32116918 C T PRRT1 3'UTR 0.45 TCGA-PQ-A6FI-01 6 33262910 33262910 G T RGL2 Silent p.L401L 0.31 TCGA-PQ-A6FI-01 6 43642976 43642976 C T MRPS18A Missense_Mutation p.E137K 0.70 tolerated(0.19) benign(0.017) TCGA-PQ-A6FI-01 6 47846543 47846543 C T PTCHD4 Silent p.V679V 0.25 TCGA-PQ-A6FI-01 6 64395370 64395370 C T PHF3 Nonsense_Mutation p.Q583* 0.21 TCGA-PQ-A6FI-01 6 75851842 75851842 G C COL12A1 Silent p.L1621L 0.28 TCGA-PQ-A6FI-01 6 83838783 83838783 A T DOPEY1 Missense_Mutation p.S633C 0.21 tolerated(0.09) probably_damaging(0.971) TCGA-PQ-A6FI-01 7 100205694 100205694 C G PCOLCE Missense_Mutation p.Q440E 0.58 deleterious_low_confidence(0.01) benign(0.044) TCGA-PQ-A6FI-01 7 127235724 127235724 G A FSCN3 Missense_Mutation p.A170T 0.48 tolerated(0.35) benign(0.025) TCGA-PQ-A6FI-01 7 132192620 132192620 G A PLXNA4 Missense_Mutation p.S278F 0.20 deleterious(0) probably_damaging(1) TCGA-PQ-A6FI-01 7 143175833 143175833 C G TAS2R41 Missense_Mutation p.L290V 0.29 deleterious(0) probably_damaging(0.98) TCGA-PQ-A6FI-01 7 157997948 157997948 C G PTPRN2 Missense_Mutation p.D99H 0.65 deleterious(0) possibly_damaging(0.879) TCGA-PQ-A6FI-01 7 26237304 26237304 C G HNRNPA2B1 Missense_Mutation p.E31Q 0.21 tolerated(0.05) benign(0.237) TCGA-PQ-A6FI-01 7 42959002 42959002 G C PSMA2 Intron 0.51 TCGA-PQ-A6FI-01 7 44574149 44574149 G C NPC1L1 Missense_Mutation p.S688C 0.55 deleterious(0.01) probably_damaging(0.972) TCGA-PQ-A6FI-01 7 48083119 48083119 C T C7orf57 Missense_Mutation p.P95S 0.54 tolerated(0.07) benign(0.406) TCGA-PQ-A6FI-01 7 63721235 63721235 T A ZNF679 Missense_Mutation p.L64M 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-PQ-A6FI-01 7 93519632 93519632 C T TFPI2 Splice_Site p.X30_splice 0.21 TCGA-PQ-A6FI-01 8 101076250 101076250 C A RGS22 Missense_Mutation p.G249V 0.34 deleterious(0.02) possibly_damaging(0.851) TCGA-PQ-A6FI-01 8 133153379 133153379 C T KCNQ3 Missense_Mutation p.E488K 0.39 deleterious(0.03) probably_damaging(0.969) TCGA-PQ-A6FI-01 8 133637551 133637551 A T LRRC6 Missense_Mutation p.M268K 0.48 deleterious(0) benign(0.011) TCGA-PQ-A6FI-01 8 1497192 1497192 C A DLGAP2 Missense_Mutation p.N111K 0.19 deleterious(0) possibly_damaging(0.87) TCGA-PQ-A6FI-01 8 56985599 56985599 A G RPS20 Intron 0.26 TCGA-PQ-A6FI-01 8 86354383 86354383 C G CA3 Missense_Mutation p.S105C 0.35 deleterious(0.01) probably_damaging(0.94) TCGA-PQ-A6FI-01 8 92086102 92086102 A G OTUD6B Missense_Mutation p.N123S 0.38 tolerated(0.15) benign(0.004) TCGA-PQ-A6FI-01 9 115179164 115179164 C T HSDL2 Missense_Mutation p.H147Y 0.17 deleterious(0) probably_damaging(0.99) TCGA-PQ-A6FI-01 9 124083609 124083609 G A GSN Missense_Mutation p.G470R 0.21 deleterious(0) probably_damaging(0.981) TCGA-PQ-A6FI-01 9 125621378 125621378 T A RC3H2 Missense_Mutation p.Y618F 0.62 tolerated(0.12) probably_damaging(0.952) TCGA-PQ-A6FI-01 9 130940677 130940681 ATTCT - CIZ1 Frame_Shift_Del p.E530* 0.21 TCGA-PQ-A6FI-01 9 131250230 131250230 G T ODF2 Missense_Mutation p.D488Y 0.64 deleterious(0) possibly_damaging(0.866) TCGA-PQ-A6FI-01 9 131503856 131503856 G A ZER1 Silent p.F565F 0.24 TCGA-PQ-A6FI-01 9 136599224 136599224 C T SARDH Silent p.G24G 0.46 TCGA-PQ-A6FI-01 9 18777729 18777729 C T ADAMTSL1 Missense_Mutation p.R1168C 0.27 deleterious(0) probably_damaging(0.915) TCGA-PQ-A6FI-01 9 33354118 33354118 G C NFX1 Missense_Mutation p.D922H 0.22 deleterious(0) probably_damaging(0.957) TCGA-PQ-A6FI-01 9 79910566 79910566 A G VPS13A Missense_Mutation p.R1206G 0.54 deleterious(0) probably_damaging(0.999) TCGA-PQ-A6FI-01 X 102931422 102931422 C T MORF4L2 Silent p.A178A 0.84 TCGA-PQ-A6FI-01 X 108619345 108619345 T C GUCY2F Missense_Mutation p.K1068E 0.86 deleterious(0) probably_damaging(0.98) TCGA-PQ-A6FI-01 X 123197030 123197031 - A STAG2 Frame_Shift_Ins p.Y600Ifs*35 0.46 TCGA-PQ-A6FI-01 X 144906347 144906347 G A SLITRK2 Missense_Mutation p.V802I 0.81 tolerated(0.32) benign(0.252) TCGA-PQ-A6FI-01 X 18725943 18725943 C T PPEF1 Missense_Mutation p.T15I 0.75 tolerated(0.21) benign(0) TCGA-PQ-A6FI-01 X 71825148 71825148 C A PHKA1 Nonsense_Mutation p.E930* 0.88 TCGA-PQ-A6FI-01 X 74494186 74494186 G T UPRT Missense_Mutation p.D33Y 1.00 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-PQ-A6FN-01 10 26513538 26513538 A T GAD2 Missense_Mutation p.I228F 0.15 deleterious(0) possibly_damaging(0.7) TCGA-PQ-A6FN-01 10 454929 454929 G C DIP2C Silent p.V362V 0.07 TCGA-PQ-A6FN-01 10 48371026 48371026 A T ZNF488 Missense_Mutation p.K165I 0.17 deleterious(0) probably_damaging(0.993) TCGA-PQ-A6FN-01 10 95139625 95139625 G T MYOF Silent p.R666R 0.15 TCGA-PQ-A6FN-01 11 56309913 56309913 G A OR5M11 Missense_Mutation p.A274V 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-PQ-A6FN-01 11 67412757 67412757 C T ACY3 Splice_Site p.X176_splice 0.24 TCGA-PQ-A6FN-01 11 77413235 77413235 C T RSF1 Missense_Mutation p.E347K 0.17 tolerated(0.06) benign(0.341) TCGA-PQ-A6FN-01 11 94126690 94126690 G T GPR83 Missense_Mutation p.P203Q 0.22 deleterious(0) probably_damaging(1) TCGA-PQ-A6FN-01 12 113600769 113600769 C T DDX54 Silent p.Q721Q 0.29 TCGA-PQ-A6FN-01 12 133294599 133294599 C G PGAM5 Missense_Mutation p.I204M 0.35 deleterious(0) probably_damaging(0.915) TCGA-PQ-A6FN-01 12 40722221 40722221 A - LRRK2 Frame_Shift_Del p.K1906Rfs*12 0.23 TCGA-PQ-A6FN-01 13 49050981 49050981 T G RB1 Splice_Site p.X888_splice 0.24 TCGA-PQ-A6FN-01 13 67477707 67477707 G T PCDH9 Missense_Mutation p.P1023T 0.06 tolerated(0.07) benign(0) TCGA-PQ-A6FN-01 14 101004383 101004383 G A BEGAIN Missense_Mutation p.P569S 0.20 tolerated(0.12) benign(0.065) TCGA-PQ-A6FN-01 14 23857516 23857516 C T MYH6 Missense_Mutation p.E1403K 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-PQ-A6FN-01 14 24662025 24662025 C T TM9SF1 Missense_Mutation p.A266T 0.20 tolerated(0.45) benign(0.159) TCGA-PQ-A6FN-01 14 69256174 69256174 G T ZFP36L1 3'UTR 0.06 TCGA-PQ-A6FN-01 14 69341569 69341569 G C ACTN1 3'UTR 0.06 TCGA-PQ-A6FN-01 14 77256982 77256982 A G ANGEL1 Silent p.A608A 0.09 TCGA-PQ-A6FN-01 15 67477105 67477105 C A SMAD3 Missense_Mutation p.F304L 0.21 deleterious(0.03) probably_damaging(0.99) TCGA-PQ-A6FN-01 16 1545520 1545520 G T TELO2 Missense_Mutation p.R170L 0.23 deleterious(0.03) benign(0.079) TCGA-PQ-A6FN-01 16 28843837 28843837 G A ATXN2L Missense_Mutation p.E513K 0.12 tolerated(0.24) possibly_damaging(0.52) TCGA-PQ-A6FN-01 16 75149164 75149164 G A LDHD Missense_Mutation p.R87C 0.16 tolerated(0.07) benign(0.008) TCGA-PQ-A6FN-01 16 76572086 76572086 C T CNTNAP4 Silent p.N950N 0.09 TCGA-PQ-A6FN-01 17 20799064 20799064 C T CCDC144NL Silent p.S90S 0.24 TCGA-PQ-A6FN-01 17 25621449 25621449 G A WSB1 Missense_Mutation p.E10K 0.12 deleterious_low_confidence(0.05) benign(0.002) TCGA-PQ-A6FN-01 17 41244538 41244538 C A BRCA1 Nonsense_Mutation p.E1004* 0.18 TCGA-PQ-A6FN-01 17 42394859 42394859 C T RUNDC3A Intron 0.29 TCGA-PQ-A6FN-01 17 51901330 51901330 C T KIF2B Silent p.T312T 0.23 TCGA-PQ-A6FN-01 17 65850819 65850819 A G BPTF Silent p.E459E 0.23 TCGA-PQ-A6FN-01 17 7578479 7578479 G C TP53 Missense_Mutation p.P151A 0.18 deleterious(0.01) possibly_damaging(0.902) TCGA-PQ-A6FN-01 17 76475713 76475713 C T DNAH17 Missense_Mutation p.R2571H 0.11 probably_damaging(0.999) TCGA-PQ-A6FN-01 17 7810488 7810488 C G CHD3 Missense_Mutation p.L1630V 0.24 benign(0.364) TCGA-PQ-A6FN-01 17 78367148 78367148 G A RNF213 Silent p.L5158L 0.14 TCGA-PQ-A6FN-01 17 78367292 78367292 G A RNF213 Missense_Mutation p.M5206I 0.10 benign(0.019) TCGA-PQ-A6FN-01 17 8794166 8794166 C T PIK3R5 Silent p.L182L 0.20 TCGA-PQ-A6FN-01 18 30672756 30672756 G C CCDC178 Nonsense_Mutation p.S786* 0.06 TCGA-PQ-A6FN-01 18 8806976 8806976 G A SOGA2 Missense_Mutation p.R841Q 0.08 tolerated(0.05) probably_damaging(0.964) TCGA-PQ-A6FN-01 19 1055207 1055207 C - ABCA7 Frame_Shift_Del p.L1355Cfs*18 0.30 TCGA-PQ-A6FN-01 19 40886785 40886785 G A HIPK4 Silent p.L371L 0.17 TCGA-PQ-A6FN-01 19 46511436 46511436 C A CCDC61 Missense_Mutation p.P143Q 0.08 deleterious(0) probably_damaging(0.996) TCGA-PQ-A6FN-01 19 49573868 49573868 C T KCNA7 Missense_Mutation p.A275T 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-PQ-A6FN-01 19 57066685 57066685 C G ZFP28 Missense_Mutation p.S844C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.789) TCGA-PQ-A6FN-01 19 5772910 5772910 C T CATSPERD Silent p.T625T 0.11 TCGA-PQ-A6FN-01 1 104121997 104121997 G C AMY2B Missense_Mutation p.D471H 0.12 deleterious(0.01) benign(0.043) TCGA-PQ-A6FN-01 1 110231939 110231939 C G GSTM1 Missense_Mutation p.P118A 0.31 deleterious(0.05) benign(0.02) TCGA-PQ-A6FN-01 1 110294321 110294321 G A EPS8L3 Silent p.P507P 0.17 TCGA-PQ-A6FN-01 1 11151169 11151169 C T EXOSC10 Missense_Mutation p.R182Q 0.15 deleterious(0) probably_damaging(0.983) TCGA-PQ-A6FN-01 1 152276360 152276360 C T FLG Missense_Mutation p.E3668K 0.12 unknown(0) TCGA-PQ-A6FN-01 1 154142875 154142875 C T TPM3 Splice_Site p.X259_splice 0.19 TCGA-PQ-A6FN-01 1 161092302 161092302 G A DEDD Missense_Mutation p.R198W 0.19 deleterious(0) possibly_damaging(0.908) TCGA-PQ-A6FN-01 1 184663589 184663589 C T EDEM3 Missense_Mutation p.E803K 0.19 tolerated(0.87) benign(0.003) TCGA-PQ-A6FN-01 1 224495876 224495876 T - NVL Frame_Shift_Del p.E145Kfs*9 0.14 TCGA-PQ-A6FN-01 1 248525363 248525363 C A OR2T4 Missense_Mutation p.P161T 0.06 deleterious(0) probably_damaging(0.978) TCGA-PQ-A6FN-01 1 45294956 45294956 C T PTCH2 Missense_Mutation p.R415Q 0.14 deleterious(0.03) possibly_damaging(0.781) TCGA-PQ-A6FN-01 1 76262726 76262726 C A MSH4 Nonsense_Mutation p.S19* 0.18 TCGA-PQ-A6FN-01 20 23476496 23476496 C T CST8 Missense_Mutation p.A125V 0.20 deleterious(0) possibly_damaging(0.885) TCGA-PQ-A6FN-01 20 30064264 30064264 G A REM1 Missense_Mutation p.E6K 0.18 tolerated(0.25) benign(0.002) TCGA-PQ-A6FN-01 21 32638382 32638384 TGG - TIAM1 In_Frame_Del p.T302del 0.20 TCGA-PQ-A6FN-01 22 32811904 32811904 C G BPIFC Missense_Mutation p.E467Q 0.24 tolerated(0.56) benign(0.024) TCGA-PQ-A6FN-01 2 228476050 228476050 G C C2orf83 3'UTR 0.11 TCGA-PQ-A6FN-01 2 74754679 74754679 C T AUP1 Missense_Mutation p.D294N 0.18 tolerated(0.19) benign(0.082) TCGA-PQ-A6FN-01 2 9004350 9004350 G C MBOAT2 Missense_Mutation p.F334L 0.18 tolerated(0.11) benign(0.327) TCGA-PQ-A6FN-01 2 97017702 97017702 C T NCAPH Missense_Mutation p.T285M 0.21 deleterious(0) benign(0.223) TCGA-PQ-A6FN-01 3 121415272 121415287 ATGGGATACTGTCTTT - GOLGB1 Frame_Shift_Del p.T1363Lfs*22 0.11 TCGA-PQ-A6FN-01 3 122647906 122647906 C T SEMA5B Splice_Site p.X213_splice 0.22 TCGA-PQ-A6FN-01 3 150480226 150480226 G A SIAH2 Silent p.P137P 0.19 TCGA-PQ-A6FN-01 3 172165991 172165991 G A GHSR Silent p.F71F 0.14 TCGA-PQ-A6FN-01 3 97983903 97983903 G A OR5H6 Missense_Mutation p.A259T 0.15 deleterious(0.01) benign(0.367) TCGA-PQ-A6FN-01 4 153251911 153251911 C T FBXW7 Nonsense_Mutation p.W365* 0.14 TCGA-PQ-A6FN-01 4 15444474 15444474 G A C1QTNF7 3'UTR 0.16 TCGA-PQ-A6FN-01 4 155014 155014 T A ZNF718 RNA 0.12 TCGA-PQ-A6FN-01 4 164393467 164393467 T C TKTL2 Missense_Mutation p.I474V 0.24 tolerated(0.08) benign(0.194) TCGA-PQ-A6FN-01 4 175183939 175183939 G T FBXO8 Missense_Mutation p.A102E 0.11 deleterious(0) probably_damaging(0.936) TCGA-PQ-A6FN-01 4 22389791 22389791 G A GPR125 Missense_Mutation p.S1168L 0.13 tolerated(0.32) benign(0.001) TCGA-PQ-A6FN-01 4 54231770 54231770 G A SCFD2 Silent p.L113L 0.22 TCGA-PQ-A6FN-01 5 113698457 113698457 C A KCNN2 5'UTR 0.24 TCGA-PQ-A6FN-01 5 177031246 177031246 C T B4GALT7 Silent p.L39L 0.24 TCGA-PQ-A6FN-01 5 82816386 82816386 C G VCAN Missense_Mutation p.T754R 0.13 deleterious(0) benign(0.223) TCGA-PQ-A6FN-01 6 111896845 111896845 C A TRAF3IP2 Splice_Site p.X401_splice 0.22 TCGA-PQ-A6FN-01 6 112476862 112476862 C G LAMA4 Missense_Mutation p.D622H 0.16 deleterious(0.01) possibly_damaging(0.548) TCGA-PQ-A6FN-01 6 159178327 159178327 C T SYTL3 Missense_Mutation p.L408F 0.22 deleterious(0) probably_damaging(0.997) TCGA-PQ-A6FN-01 6 34824669 34824669 G A UHRF1BP1 Missense_Mutation p.C465Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-PQ-A6FN-01 6 49698956 49698956 C T CRISP3 Nonsense_Mutation p.W200* 0.08 TCGA-PQ-A6FN-01 6 52285185 52285185 G T EFHC1 5'UTR 0.35 TCGA-PQ-A6FN-01 6 87725923 87725923 C T HTR1E Missense_Mutation p.R291C 0.29 deleterious(0) probably_damaging(0.978) TCGA-PQ-A6FN-01 7 48068434 48068434 G A SUN3 Silent p.D34D 0.18 TCGA-PQ-A6FN-01 7 73530188 73530188 G C LIMK1 Missense_Mutation p.K489N 0.09 tolerated(0.06) probably_damaging(0.93) TCGA-PQ-A6FN-01 8 124250180 124250180 T C C8orf76 Missense_Mutation p.K72R 0.09 tolerated(0.13) benign(0.021) TCGA-PQ-A6FN-01 8 125025860 125025860 C A FER1L6 Intron 0.33 TCGA-PQ-A6FN-01 8 139165340 139165340 G C FAM135B Missense_Mutation p.L460V 0.22 tolerated(0.21) benign(0.033) TCGA-PQ-A6FN-01 8 146076561 146076561 C G COMMD5 Missense_Mutation p.V55L 0.27 tolerated(0.06) possibly_damaging(0.462) TCGA-PQ-A6FN-01 8 53085004 53085005 - T ST18 Frame_Shift_Ins p.N139Kfs*9 0.22 TCGA-PQ-A6FN-01 8 57080766 57080766 C T PLAG1 Silent p.G21G 0.29 TCGA-PQ-A6FN-01 8 618597 618597 C A ERICH1 Splice_Site p.X420_splice 0.22 TCGA-PQ-A6FN-01 9 101981110 101981110 G T ALG2 Silent p.A119A 0.07 TCGA-PQ-A6FN-01 9 131670445 131670445 C T LRRC8A Silent p.L334L 0.10 TCGA-PQ-A6FN-01 9 8389393 8389393 C G PTPRD Missense_Mutation p.D1409H 0.19 deleterious(0) probably_damaging(1) TCGA-PQ-A6FN-01 9 84530798 84530798 G C SPATA31D5P RNA 0.06 TCGA-PQ-A6FN-01 X 10102572 10102572 G A WWC3 Missense_Mutation p.R900Q 0.15 deleterious(0) probably_damaging(0.993) TCGA-PQ-A6FN-01 X 106888521 106888521 G A PRPS1 Silent p.V215V 0.28 TCGA-PQ-A6FN-01 X 123504037 123504037 G A SH2D1A Silent p.G71G 0.07 TCGA-PQ-A6FN-01 X 39933316 39933316 T C BCOR Missense_Mutation p.E428G 0.18 deleterious(0) probably_damaging(0.995) TCGA-PQ-A6FN-01 X 69454545 69454545 C G AWAT1 5'UTR 0.21 TCGA-PQ-A6FN-01 X 69749013 69749013 C A TEX11 Missense_Mutation p.V919L 0.15 tolerated(1) benign(0.005) TCGA-PQ-A6FN-01 X 70367906 70367906 C T NLGN3 Missense_Mutation p.P103S 0.22 tolerated(0.35) benign(0.004) TCGA-PQ-A6FN-01 X 8501089 8501089 G A KAL1 Missense_Mutation p.H664Y 0.26 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-PQ-A6FN-01 X 95993758 95993758 G C DIAPH2 Missense_Mutation p.M113I 0.09 deleterious(0.04) unknown(0) TCGA-R3-A69X-01 10 101370696 101370696 C T SLC25A28 Silent p.Q335Q 0.20 TCGA-R3-A69X-01 10 103988841 103988841 C T ELOVL3 Silent p.I215I 0.05 TCGA-R3-A69X-01 10 111631599 111631599 G A XPNPEP1 Silent p.L491L 0.07 TCGA-R3-A69X-01 10 120829139 120829139 G C EIF3A Missense_Mutation p.H257D 0.16 deleterious(0) unknown(0) TCGA-R3-A69X-01 10 120830514 120830514 G A EIF3A Nonsense_Mutation p.Q209* 0.15 TCGA-R3-A69X-01 10 121203194 121203194 G A GRK5 Missense_Mutation p.R399H 0.16 deleterious(0.01) possibly_damaging(0.822) TCGA-R3-A69X-01 10 135076526 135076526 G T ADAM8 3'UTR 0.06 TCGA-R3-A69X-01 10 17130311 17130311 G C CUBN Missense_Mutation p.S600C 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-R3-A69X-01 10 17277884 17277884 G C VIM Silent p.L423L 0.11 TCGA-R3-A69X-01 10 29821616 29821616 C A SVIL Missense_Mutation p.L560F 0.18 tolerated(0.72) benign(0.001) TCGA-R3-A69X-01 10 30315509 30315509 C G KIAA1462 Missense_Mutation p.E1190Q 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-R3-A69X-01 10 74183013 74183013 C G MICU1 Missense_Mutation p.K350N 0.18 deleterious(0.04) benign(0.089) TCGA-R3-A69X-01 10 75013876 75013876 G C TTC18 Intron 0.32 TCGA-R3-A69X-01 10 79759835 79759835 G A POLR3A Silent p.S840S 0.16 TCGA-R3-A69X-01 10 96353307 96353307 C T HELLS Nonsense_Mutation p.R675* 0.14 TCGA-R3-A69X-01 10 98092126 98092126 G C DNTT Missense_Mutation p.D378H 0.09 tolerated(0.08) probably_damaging(0.987) TCGA-R3-A69X-01 10 98092135 98092135 G C DNTT Missense_Mutation p.E381Q 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-R3-A69X-01 11 108236221 108236221 A T ATM Nonsense_Mutation p.K3053* 0.29 TCGA-R3-A69X-01 11 118963111 118963111 C T HMBS Intron 0.29 TCGA-R3-A69X-01 11 26556101 26556101 C G ANO3 Nonsense_Mutation p.S323* 0.06 TCGA-R3-A69X-01 11 51515494 51515494 T C OR4C46 Silent p.Y71Y 0.25 TCGA-R3-A69X-01 11 57296083 57296083 C T TIMM10 3'UTR 0.25 TCGA-R3-A69X-01 11 5878003 5878003 C A OR52E8 Missense_Mutation p.R310S 0.15 tolerated(0.3) benign(0.001) TCGA-R3-A69X-01 11 58979536 58979536 G C MPEG1 Nonsense_Mutation p.S268* 0.26 TCGA-R3-A69X-01 11 62559447 62559447 C T TMEM223 Missense_Mutation p.R7Q 0.30 tolerated_low_confidence(0.14) benign(0.008) TCGA-R3-A69X-01 11 65562573 65562573 C T OVOL1 Silent p.L189L 0.18 TCGA-R3-A69X-01 11 73372619 73372619 C T PLEKHB1 Missense_Mutation p.S235L 0.31 deleterious(0) probably_damaging(0.996) TCGA-R3-A69X-01 11 73801879 73801879 C G C2CD3 Missense_Mutation p.C1207S 0.14 tolerated(0.51) benign(0.028) TCGA-R3-A69X-01 11 74717267 74717267 G A NEU3 Silent p.Q372Q 0.21 TCGA-R3-A69X-01 11 76869397 76869397 C T MYO7A Silent p.L308L 0.05 TCGA-R3-A69X-01 12 110581233 110581233 G A IFT81 Missense_Mutation p.M276I 0.19 tolerated(0.17) benign(0.004) TCGA-R3-A69X-01 12 121176981 121176981 G A ACADS Silent p.A356A 0.06 TCGA-R3-A69X-01 12 123001942 123001942 G C RSRC2 Missense_Mutation p.S145C 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-R3-A69X-01 12 133438095 133438095 C T CHFR Missense_Mutation p.D249N 0.17 tolerated(0.08) benign(0.033) TCGA-R3-A69X-01 12 13769528 13769528 C G GRIN2B Missense_Mutation p.E397Q 0.09 tolerated(0.13) benign(0.012) TCGA-R3-A69X-01 12 53189845 53189845 G A KRT3 5'UTR 0.12 TCGA-R3-A69X-01 12 58340842 58340842 G C XRCC6BP1 Missense_Mutation p.D100H 0.10 deleterious(0) probably_damaging(0.999) TCGA-R3-A69X-01 12 64819607 64819607 G A XPOT Missense_Mutation p.D529N 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-R3-A69X-01 12 6666705 6666705 C T NOP2 Silent p.K664K 0.10 TCGA-R3-A69X-01 12 89917871 89917871 G A GALNT4 Silent p.L152L 0.17 TCGA-R3-A69X-01 12 9020827 9020827 C T A2ML1 Missense_Mutation p.T1312M 0.09 tolerated(0.15) benign(0.161) TCGA-R3-A69X-01 12 95603049 95603049 C G FGD6 Missense_Mutation p.E671Q 0.10 tolerated(0.19) benign(0.18) TCGA-R3-A69X-01 13 23909322 23909322 C T SACS Missense_Mutation p.R2898H 0.12 probably_damaging(0.996) TCGA-R3-A69X-01 13 36049570 36049570 C T MAB21L1 Missense_Mutation p.E236K 0.13 tolerated(0.16) benign(0.232) TCGA-R3-A69X-01 13 45768091 45768091 A G KCTD4 Silent p.N204N 0.16 TCGA-R3-A69X-01 13 75880511 75880511 A - TBC1D4 Frame_Shift_Del p.L897Cfs*2 0.14 TCGA-R3-A69X-01 14 101455496 101455496 G C SNORD114-28 RNA 0.05 TCGA-R3-A69X-01 14 24530802 24530802 G C LRRC16B Missense_Mutation p.E801Q 0.13 deleterious(0.04) possibly_damaging(0.889) TCGA-R3-A69X-01 14 24886355 24886355 C A NYNRIN Silent p.L1800L 0.06 TCGA-R3-A69X-01 14 50788295 50788295 G A ATP5S Silent p.L45L 0.11 TCGA-R3-A69X-01 14 53004342 53004342 C G TXNDC16 Missense_Mutation p.D98H 0.33 tolerated(0.12) benign(0.326) TCGA-R3-A69X-01 14 99879227 99879227 C T SETD3 Intron 0.14 TCGA-R3-A69X-01 15 34825056 34825056 G C GOLGA8B Missense_Mutation p.I92M 0.16 deleterious(0.02) probably_damaging(0.935) TCGA-R3-A69X-01 15 55612551 55612551 G C PIGB Missense_Mutation p.S81T 0.13 tolerated(0.31) possibly_damaging(0.864) TCGA-R3-A69X-01 15 62223401 62223401 G A VPS13C Missense_Mutation p.L1976F 0.12 tolerated(0.46) benign(0.076) TCGA-R3-A69X-01 15 80767351 80767351 G A ARNT2 Missense_Mutation p.E137K 0.09 deleterious(0) possibly_damaging(0.621) TCGA-R3-A69X-01 16 11931707 11931707 C G RSL1D1 Silent p.V470V 0.16 TCGA-R3-A69X-01 16 14294313 14294313 C G MKL2 Intron 0.11 TCGA-R3-A69X-01 16 19718183 19718183 G T KNOP1 3'UTR 0.15 TCGA-R3-A69X-01 16 20974804 20974804 G C DNAH3 Missense_Mutation p.Q3468E 0.14 tolerated(0.88) benign(0.002) TCGA-R3-A69X-01 16 31391655 31391655 G A ITGAX Silent p.L1043L 0.11 TCGA-R3-A69X-01 16 31393235 31393235 C T ITGAX 3'UTR 0.09 TCGA-R3-A69X-01 16 56947234 56947234 G C SLC12A3 Missense_Mutation p.E1004Q 0.14 deleterious(0) probably_damaging(0.962) TCGA-R3-A69X-01 16 56947277 56947277 G A SLC12A3 Missense_Mutation p.R1018Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-R3-A69X-01 16 56947400 56947400 G A SLC12A3 3'UTR 0.20 TCGA-R3-A69X-01 16 56977366 56977366 G C HERPUD1 3'UTR 0.19 TCGA-R3-A69X-01 16 57470628 57470628 C T CIAPIN1 Silent p.V109V 0.14 TCGA-R3-A69X-01 16 58071455 58071455 C T MMP15 Missense_Mutation p.S81L 0.08 deleterious(0.01) benign(0.121) TCGA-R3-A69X-01 16 67314440 67314440 G C PLEKHG4 Missense_Mutation p.E165Q 0.15 tolerated(0.07) benign(0.372) TCGA-R3-A69X-01 16 67314998 67314998 G A PLEKHG4 Missense_Mutation p.E242K 0.16 tolerated(0.07) benign(0.052) TCGA-R3-A69X-01 16 67380272 67380272 G C LRRC36 Missense_Mutation p.L104F 0.18 tolerated(0.09) probably_damaging(0.999) TCGA-R3-A69X-01 16 71101221 71101221 C G HYDIN Missense_Mutation p.E683Q 0.12 probably_damaging(0.962) TCGA-R3-A69X-01 16 72830014 72830014 G C ZFHX3 Missense_Mutation p.I2189M 0.08 probably_damaging(0.996) TCGA-R3-A69X-01 16 72831467 72831467 G A ZFHX3 Missense_Mutation p.S1705L 0.14 benign(0.091) TCGA-R3-A69X-01 16 77465475 77465475 G C ADAMTS18 Nonsense_Mutation p.S71* 0.17 TCGA-R3-A69X-01 17 26086024 26086024 G C NOS2 Silent p.L1079L 0.08 TCGA-R3-A69X-01 17 26086099 26086099 G C NOS2 Silent p.V1054V 0.24 TCGA-R3-A69X-01 17 30348407 30348407 C T LRRC37B Missense_Mutation p.S81L 0.09 tolerated_low_confidence(0.13) benign(0.009) TCGA-R3-A69X-01 17 30348416 30348416 C T LRRC37B Missense_Mutation p.S84L 0.09 tolerated_low_confidence(1) benign(0.421) TCGA-R3-A69X-01 17 32483411 32483411 C T ASIC2 Silent p.V47V 0.18 TCGA-R3-A69X-01 17 33772480 33772480 C G SLFN13 Missense_Mutation p.E74Q 0.22 tolerated(0.19) possibly_damaging(0.717) TCGA-R3-A69X-01 17 39412073 39412073 G A KRTAP9-9 Missense_Mutation p.E146K 0.22 tolerated(0.82) possibly_damaging(0.631) TCGA-R3-A69X-01 17 60493782 60493782 G T EFCAB3 3'UTR 0.15 TCGA-R3-A69X-01 17 62892233 62892233 C T LRRC37A3 Silent p.E381E 0.04 TCGA-R3-A69X-01 17 63221511 63221511 C T RGS9 Missense_Mutation p.S600L 0.18 tolerated_low_confidence(0.05) benign(0.059) TCGA-R3-A69X-01 17 72249219 72249219 G C TTYH2 Splice_Site p.X420_splice 0.16 TCGA-R3-A69X-01 17 7592309 7592309 G A WRAP53 Missense_Mutation p.E115K 0.19 tolerated(0.08) possibly_damaging(0.636) TCGA-R3-A69X-01 17 7804636 7804636 C G CHD3 Silent p.L1124L 0.07 TCGA-R3-A69X-01 17 80477932 80477932 C T FOXK2 Silent p.I56I 0.10 TCGA-R3-A69X-01 17 80477941 80477941 C A FOXK2 Missense_Mutation p.N59K 0.11 deleterious(0) probably_damaging(0.986) TCGA-R3-A69X-01 18 2778202 2778202 G C SMCHD1 Missense_Mutation p.D1838H 0.11 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 18 619236 619236 G A CLUL1 Missense_Mutation p.D44N 0.25 tolerated(0.93) benign(0.004) TCGA-R3-A69X-01 18 76753653 76753653 G A SALL3 Silent p.Q554Q 0.20 TCGA-R3-A69X-01 19 11216141 11216141 C G LDLR Missense_Mutation p.L187V 0.15 tolerated(0.31) benign(0.009) TCGA-R3-A69X-01 19 14743786 14743786 C G EMR3 Missense_Mutation p.L530F 0.08 deleterious(0) probably_damaging(0.967) TCGA-R3-A69X-01 19 2291482 2291482 G A LINGO3 Silent p.F98F 0.25 TCGA-R3-A69X-01 19 31767481 31767481 A G TSHZ3 Missense_Mutation p.L1073P 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-R3-A69X-01 19 32873699 32873699 G A ZNF507 Missense_Mutation p.E858K 0.15 tolerated(0.23) possibly_damaging(0.899) TCGA-R3-A69X-01 19 36430975 36430975 G A LRFN3 Silent p.L216L 0.15 TCGA-R3-A69X-01 19 38028716 38028716 C G ZNF793 Missense_Mutation p.Q386E 0.23 tolerated(0.18) benign(0.345) TCGA-R3-A69X-01 19 43414847 43414847 G - PSG6 Frame_Shift_Del p.N198Tfs*25 0.17 TCGA-R3-A69X-01 19 44933034 44933034 G A ZNF229 Missense_Mutation p.S641L 0.15 tolerated(0.31) possibly_damaging(0.761) TCGA-R3-A69X-01 19 53645516 53645516 G C ZNF347 Missense_Mutation p.Q190E 0.14 tolerated(0.08) benign(0.012) TCGA-R3-A69X-01 19 53885002 53885002 G C ZNF525 Missense_Mutation p.K390N 0.10 deleterious(0) benign(0.427) TCGA-R3-A69X-01 19 53885628 53885628 G A ZNF525 3'UTR 0.19 TCGA-R3-A69X-01 19 54803733 54803733 G A LILRA3 Missense_Mutation p.L31F 0.17 deleterious(0.03) probably_damaging(0.947) TCGA-R3-A69X-01 19 54849231 54849231 C T LILRA4 Missense_Mutation p.D211N 0.19 tolerated(0.05) possibly_damaging(0.894) TCGA-R3-A69X-01 19 55525794 55525794 G C GP6 Missense_Mutation p.L507V 0.13 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-R3-A69X-01 19 56382207 56382207 A C NLRP4 Missense_Mutation p.H790P 0.07 tolerated(0.2) benign(0.009) TCGA-R3-A69X-01 19 58772640 58772640 G C ZNF544 Missense_Mutation p.C223S 0.14 tolerated(0.42) benign(0.004) TCGA-R3-A69X-01 19 59010559 59010559 C T SLC27A5 Missense_Mutation p.E566K 0.17 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 19 603926 603926 C T HCN2 Missense_Mutation p.R339C 0.21 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 19 9074451 9074451 G C MUC16 Missense_Mutation p.S4332C 0.12 unknown(0) TCGA-R3-A69X-01 1 10421024 10421024 C T KIF1B Silent p.L1319L 0.11 TCGA-R3-A69X-01 1 109241269 109241269 G C PRPF38B Missense_Mutation p.G201A 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-R3-A69X-01 1 118492623 118492623 C G WDR3 Missense_Mutation p.S539C 0.16 deleterious(0) possibly_damaging(0.847) TCGA-R3-A69X-01 1 1231202 1231202 C T ACAP3 Missense_Mutation p.R540Q 0.17 deleterious(0.05) benign(0.011) TCGA-R3-A69X-01 1 145096492 145096492 G C SEC22B RNA 0.19 TCGA-R3-A69X-01 1 145597034 145597034 C G POLR3C Missense_Mutation p.R364T 0.33 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 1 145598282 145598282 C T POLR3C Missense_Mutation p.G324E 0.18 tolerated(0.2) benign(0.114) TCGA-R3-A69X-01 1 150532591 150532591 C T ADAMTSL4 Silent p.L1048L 0.10 TCGA-R3-A69X-01 1 151288521 151288521 G A PI4KB Missense_Mutation p.S158L 0.09 tolerated(0.07) benign(0.43) TCGA-R3-A69X-01 1 154033030 154033030 C G NUP210L Missense_Mutation p.E946Q 0.19 tolerated(0.58) possibly_damaging(0.881) TCGA-R3-A69X-01 1 161641390 161641390 G C FCGR2B Missense_Mutation p.Q114H 0.37 deleterious(0.03) probably_damaging(0.987) TCGA-R3-A69X-01 1 167663448 167663448 C T RCSD1 Missense_Mutation p.P128L 0.14 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 1 178269176 178269176 G A RASAL2 Missense_Mutation p.R127Q 0.06 tolerated(0.08) probably_damaging(0.996) TCGA-R3-A69X-01 1 179399599 179399599 C G AXDND1 Missense_Mutation p.L449V 0.10 deleterious(0.02) possibly_damaging(0.636) TCGA-R3-A69X-01 1 197889132 197889132 G A LHX9 Missense_Mutation p.A69T 0.06 tolerated(0.15) benign(0.006) TCGA-R3-A69X-01 1 198678922 198678922 C T PTPRC Silent p.N380N 0.06 TCGA-R3-A69X-01 1 199996845 199996845 C G NR5A2 5'UTR 0.60 TCGA-R3-A69X-01 1 201983060 201983060 C A ELF3 Missense_Mutation p.F303L 0.33 deleterious(0) probably_damaging(0.998) TCGA-R3-A69X-01 1 205070813 205070813 G C RBBP5 Missense_Mutation p.Q183E 0.10 tolerated(0.06) benign(0.001) TCGA-R3-A69X-01 1 205389616 205389616 C G LEMD1 Missense_Mutation p.E17Q 0.09 tolerated(0.21) possibly_damaging(0.728) TCGA-R3-A69X-01 1 207934759 207934759 C T CD46 Missense_Mutation p.S214L 0.08 tolerated(0.17) benign(0.005) TCGA-R3-A69X-01 1 2082274 2082274 C T PRKCZ Nonsense_Mutation p.Q245* 0.24 TCGA-R3-A69X-01 1 20991212 20991212 G T KIF17 Missense_Mutation p.N985K 0.11 tolerated(0.1) benign(0.169) TCGA-R3-A69X-01 1 214170224 214170224 C G PROX1 Missense_Mutation p.L116V 0.10 tolerated(0.59) probably_damaging(0.992) TCGA-R3-A69X-01 1 220219808 220219808 G C EPRS 5'UTR 0.12 TCGA-R3-A69X-01 1 229637823 229637823 C G NUP133 Missense_Mutation p.D110H 0.08 deleterious(0.03) possibly_damaging(0.768) TCGA-R3-A69X-01 1 235922785 235922785 C T LYST Missense_Mutation p.G2123E 0.08 tolerated_low_confidence(0.16) benign(0.172) TCGA-R3-A69X-01 1 23694481 23694481 G A ZNF436 Silent p.L6L 0.16 TCGA-R3-A69X-01 1 240458166 240458166 C T FMN2 Nonsense_Mutation p.Q1400* 0.18 TCGA-R3-A69X-01 1 245848976 245848976 G T KIF26B Missense_Mutation p.Q897H 0.15 tolerated(0.11) unknown(0) TCGA-R3-A69X-01 1 247319961 247319961 C T ZNF124 Silent p.Q259Q 0.07 TCGA-R3-A69X-01 1 248308668 248308668 C T OR2M5 Silent p.L73L 0.11 TCGA-R3-A69X-01 1 248367203 248367203 C T OR2M3 Silent p.Y278Y 0.23 TCGA-R3-A69X-01 1 26380408 26380408 C G TRIM63 Missense_Mutation p.E343Q 0.06 tolerated_low_confidence(0.06) unknown(0) TCGA-R3-A69X-01 1 27674037 27674037 T C SYTL1 Missense_Mutation p.M106T 0.09 deleterious(0) benign(0.01) TCGA-R3-A69X-01 1 38289415 38289415 C T MTF1 Missense_Mutation p.D380N 0.11 tolerated(1) benign(0.005) TCGA-R3-A69X-01 1 40981007 40981007 C A EXO5 Missense_Mutation p.S264Y 0.12 tolerated(0.21) possibly_damaging(0.824) TCGA-R3-A69X-01 1 44878058 44878058 C T RNF220 Missense_Mutation p.P97S 0.21 tolerated(0.06) benign(0.326) TCGA-R3-A69X-01 1 55622627 55622627 C T USP24 Silent p.K480K 0.10 TCGA-R3-A69X-01 1 63063664 63063664 G C ANGPTL3 Missense_Mutation p.E143Q 0.14 deleterious(0.01) possibly_damaging(0.764) TCGA-R3-A69X-01 1 68955151 68955151 C G DEPDC1 Missense_Mutation p.G152A 0.15 tolerated(0.5) benign(0.005) TCGA-R3-A69X-01 1 86249954 86249954 C G COL24A1 Silent p.L1385L 0.17 TCGA-R3-A69X-01 1 87380822 87380822 G C HS2ST1 Missense_Mutation p.E35Q 0.19 tolerated(0.13) benign(0.037) TCGA-R3-A69X-01 20 13074214 13074214 C G SPTLC3 Missense_Mutation p.F272L 0.16 deleterious(0) possibly_damaging(0.734) TCGA-R3-A69X-01 20 20246062 20246062 G A C20orf26 Intron 0.06 TCGA-R3-A69X-01 20 33222506 33222506 G C PIGU Missense_Mutation p.P148A 0.16 deleterious(0) possibly_damaging(0.672) TCGA-R3-A69X-01 20 8770175 8770175 G C PLCB1 Missense_Mutation p.E1097Q 0.18 deleterious(0.04) possibly_damaging(0.823) TCGA-R3-A69X-01 21 31874370 31874370 G A KRTAP19-5 Silent p.Y13Y 0.10 TCGA-R3-A69X-01 21 37650591 37650591 G A DOPEY2 Silent p.R1969R 0.10 TCGA-R3-A69X-01 21 41550907 41550907 C T DSCAM Missense_Mutation p.R965Q 0.16 tolerated(0.27) benign(0.156) TCGA-R3-A69X-01 22 20720865 20720865 C T USP41 Missense_Mutation p.E295K 0.09 tolerated(0.52) benign(0.02) TCGA-R3-A69X-01 22 21350043 21350043 C G LZTR1 Missense_Mutation p.L651V 0.17 deleterious(0.03) benign(0.194) TCGA-R3-A69X-01 22 21377013 21377013 G A P2RX6 Missense_Mutation p.E146K 0.19 tolerated(0.51) benign(0.052) TCGA-R3-A69X-01 22 30125136 30125136 C T CABP7 Silent p.I153I 0.15 TCGA-R3-A69X-01 22 38055357 38055358 - C PDXP Frame_Shift_Ins p.G192Wfs*47 0.19 TCGA-R3-A69X-01 22 41574921 41574921 G C EP300 Missense_Mutation p.L2402F 0.06 unknown(0) TCGA-R3-A69X-01 2 106498419 106498419 G A NCK2 Missense_Mutation p.G288R 0.07 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 2 113309360 113309360 C T POLR1B Silent p.V257V 0.16 TCGA-R3-A69X-01 2 128327427 128327427 C A MYO7B Silent p.I178I 0.12 TCGA-R3-A69X-01 2 131520173 131520173 G A AMER3 Silent p.S176S 0.22 TCGA-R3-A69X-01 2 139428704 139428704 C A NXPH2 Missense_Mutation p.D195Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-R3-A69X-01 2 166245311 166245311 C G SCN2A Silent p.L1665L 0.09 TCGA-R3-A69X-01 2 16742736 16742736 G C FAM49A Missense_Mutation p.I167M 0.09 tolerated(0.71) benign(0.057) TCGA-R3-A69X-01 2 178095761 178095761 C G NFE2L2 Missense_Mutation p.E524Q 0.09 tolerated(0.2) probably_damaging(0.962) TCGA-R3-A69X-01 2 179413577 179413577 C G TTN Missense_Mutation p.D30926H 0.16 TCGA-R3-A69X-01 2 179474265 179474265 C G TTN Missense_Mutation p.E17258Q 0.15 TCGA-R3-A69X-01 2 179485018 179485018 G A TTN Silent p.F15410F 0.21 TCGA-R3-A69X-01 2 183623969 183623969 G C DNAJC10 Missense_Mutation p.D694H 0.12 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 2 209190966 209190966 A G PIKFYVE Missense_Mutation p.D1144G 0.15 tolerated(0.22) benign(0) TCGA-R3-A69X-01 2 211454829 211454829 G A CPS1 Splice_Site p.X244_splice 0.11 TCGA-R3-A69X-01 2 217124196 217124196 C T MARCH4 Missense_Mutation p.E358K 0.12 tolerated(0.7) benign(0.025) TCGA-R3-A69X-01 2 219507882 219507882 C G ZNF142 Silent p.L1119L 0.08 TCGA-R3-A69X-01 2 219855638 219855638 G A CRYBA2 Missense_Mutation p.P128S 0.14 deleterious(0.04) possibly_damaging(0.819) TCGA-R3-A69X-01 2 233322988 233322988 C G ALPI Silent p.V351V 0.16 TCGA-R3-A69X-01 2 238243312 238243312 C T COL6A3 Silent p.L3062L 0.11 TCGA-R3-A69X-01 2 3482687 3482687 G C TRAPPC12 Missense_Mutation p.D650H 0.14 deleterious(0) probably_damaging(0.928) TCGA-R3-A69X-01 2 60995663 60995663 A G PAPOLG Missense_Mutation p.Y102C 0.18 deleterious(0) probably_damaging(0.962) TCGA-R3-A69X-01 2 73717006 73717006 C T ALMS1 Silent p.F2639F 0.12 TCGA-R3-A69X-01 2 73786208 73786208 G A ALMS1 Silent p.K3440K 0.21 TCGA-R3-A69X-01 2 97490857 97490857 G A CNNM3 Missense_Mutation p.E430K 0.22 deleterious(0) probably_damaging(0.998) TCGA-R3-A69X-01 2 99012572 99012572 C T CNGA3 Silent p.I313I 0.11 TCGA-R3-A69X-01 3 111710323 111710323 G A ABHD10 Missense_Mutation p.E226K 0.19 tolerated(0.2) benign(0.068) TCGA-R3-A69X-01 3 113375232 113375232 G A KIAA2018 Missense_Mutation p.S1766L 0.19 possibly_damaging(0.493) TCGA-R3-A69X-01 3 113375523 113375523 G A KIAA2018 Missense_Mutation p.S1669F 0.22 probably_damaging(0.999) TCGA-R3-A69X-01 3 126915699 126915699 C G C3orf56 Silent p.L57L 0.12 TCGA-R3-A69X-01 3 130748590 130748590 G C NEK11 Missense_Mutation p.G13A 0.17 tolerated_low_confidence(1) benign(0.006) TCGA-R3-A69X-01 3 136191256 136191256 G T STAG1 Missense_Mutation p.H402N 0.21 tolerated(0.07) benign(0.001) TCGA-R3-A69X-01 3 142188328 142188328 G A ATR Missense_Mutation p.P2135S 0.11 deleterious(0.03) probably_damaging(1) TCGA-R3-A69X-01 3 169998975 169998975 G C PRKCI Missense_Mutation p.E302Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-R3-A69X-01 3 193036819 193036819 A T ATP13A5 Nonsense_Mutation p.L665* 0.06 TCGA-R3-A69X-01 3 197427443 197427443 C G KIAA0226 Intron 0.13 TCGA-R3-A69X-01 3 32915444 32915444 G A TRIM71 Silent p.L329L 0.16 TCGA-R3-A69X-01 3 36873354 36873354 C G TRANK1 Missense_Mutation p.E2530Q 0.12 tolerated(0.21) benign(0.004) TCGA-R3-A69X-01 3 38921528 38921528 G A SCN11A Silent p.I1102I 0.17 TCGA-R3-A69X-01 3 49570510 49570510 G A DAG1 Missense_Mutation p.E856K 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-R3-A69X-01 3 51746960 51746960 G A GRM2 Missense_Mutation p.E308K 0.13 deleterious(0.02) benign(0.437) TCGA-R3-A69X-01 3 57850347 57850347 G A SLMAP Missense_Mutation p.D347N 0.16 tolerated(0.18) benign(0.003) TCGA-R3-A69X-01 3 61548017 61548017 C T PTPRG Missense_Mutation p.S19F 0.05 tolerated_low_confidence(0.07) benign(0.015) TCGA-R3-A69X-01 3 65342012 65342012 G A MAGI1 3'Flank 0.10 TCGA-R3-A69X-01 3 97466366 97466366 C T EPHA6 Silent p.F1076F 0.11 TCGA-R3-A69X-01 4 109667937 109667937 C T ETNPPL Missense_Mutation p.A385T 0.10 tolerated(0.08) probably_damaging(0.931) TCGA-R3-A69X-01 4 113461040 113461040 G A C4orf21 Nonsense_Mutation p.R2051* 0.10 TCGA-R3-A69X-01 4 115760586 115760586 C G NDST4 Missense_Mutation p.G745A 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-R3-A69X-01 4 128813645 128813645 G A PLK4 Missense_Mutation p.D722N 0.16 deleterious(0.01) possibly_damaging(0.723) TCGA-R3-A69X-01 4 142145770 142145770 G C ZNF330 Missense_Mutation p.K50N 0.11 deleterious(0) probably_damaging(0.998) TCGA-R3-A69X-01 4 145035896 145035896 G C GYPA Missense_Mutation p.L128V 0.06 tolerated(0.92) benign(0.085) TCGA-R3-A69X-01 4 145636476 145636476 T A HHIP Missense_Mutation p.S524R 0.12 deleterious(0.01) benign(0.011) TCGA-R3-A69X-01 4 152212432 152212432 C G PRSS48 Missense_Mutation p.L272V 0.12 tolerated(0.06) possibly_damaging(0.863) TCGA-R3-A69X-01 4 17625233 17625233 G C MED28 Missense_Mutation p.E117Q 0.17 deleterious(0.01) possibly_damaging(0.724) TCGA-R3-A69X-01 4 186299391 186299391 G C LRP2BP 5'UTR 0.15 TCGA-R3-A69X-01 4 2965807 2965807 G C GRK4 Missense_Mutation p.E4Q 0.19 deleterious(0.03) benign(0.007) TCGA-R3-A69X-01 4 40440385 40440385 C A RBM47 Nonsense_Mutation p.E176* 0.12 TCGA-R3-A69X-01 4 42588376 42588376 C G ATP8A1 Missense_Mutation p.D238H 0.13 tolerated(0.26) benign(0.005) TCGA-R3-A69X-01 4 57221548 57221548 G C AASDH Missense_Mutation p.I301M 0.08 deleterious(0.03) possibly_damaging(0.465) TCGA-R3-A69X-01 4 71495237 71495237 G A ENAM Missense_Mutation p.R7K 0.13 deleterious(0.01) benign(0.269) TCGA-R3-A69X-01 4 83372248 83372248 G T ENOPH1 Missense_Mutation p.G80V 0.11 tolerated(0.13) benign(0.013) TCGA-R3-A69X-01 4 94138009 94138009 C T GRID2 Nonsense_Mutation p.R304* 0.13 TCGA-R3-A69X-01 5 125953007 125953007 C G PHAX Missense_Mutation p.I299M 0.25 deleterious(0.02) possibly_damaging(0.817) TCGA-R3-A69X-01 5 140515911 140515911 G A PCDHB5 Missense_Mutation p.E299K 0.10 deleterious_low_confidence(0.01) benign(0.113) TCGA-R3-A69X-01 5 141019656 141019656 G A RELL2 Missense_Mutation p.E225K 0.27 deleterious_low_confidence(0) benign(0.171) TCGA-R3-A69X-01 5 24487870 24487870 C G CDH10 Missense_Mutation p.E757Q 0.17 tolerated(0.11) benign(0.31) TCGA-R3-A69X-01 5 31535873 31535873 A G C5orf22 Missense_Mutation p.I84V 0.35 deleterious(0) probably_damaging(0.979) TCGA-R3-A69X-01 5 54965611 54965611 C T SLC38A9 Missense_Mutation p.G115S 0.27 tolerated(0.2) benign(0.266) TCGA-R3-A69X-01 5 56177617 56177617 G C MAP3K1 Missense_Mutation p.E864Q 0.20 tolerated_low_confidence(0.09) benign(0.341) TCGA-R3-A69X-01 5 75490905 75490905 C T SV2C Missense_Mutation p.R248C 0.19 deleterious(0) probably_damaging(0.995) TCGA-R3-A69X-01 6 10529483 10529483 C T GCNT2 Silent p.L113L 0.08 TCGA-R3-A69X-01 6 13365387 13365387 G A GFOD1 Missense_Mutation p.S254L 0.07 deleterious(0.01) benign(0.13) TCGA-R3-A69X-01 6 168226401 168226401 G A MLLT4 5'Flank 0.10 TCGA-R3-A69X-01 6 170143280 170143280 C G TCTE3 Missense_Mutation p.E128Q 0.11 tolerated(0.16) benign(0.047) TCGA-R3-A69X-01 6 18236805 18236805 C T DEK Missense_Mutation p.D309N 0.06 tolerated(0.09) probably_damaging(0.956) TCGA-R3-A69X-01 6 30893354 30893354 G A VARS2 Missense_Mutation p.G970D 0.08 tolerated(0.61) benign(0.005) TCGA-R3-A69X-01 6 31918694 31918694 C A CFB Missense_Mutation p.P1112T 0.11 deleterious(0.02) probably_damaging(0.916) TCGA-R3-A69X-01 6 36463489 36463489 C G STK38 3'UTR 0.10 TCGA-R3-A69X-01 6 38705721 38705721 G C DNAH8 Silent p.L146L 0.11 TCGA-R3-A69X-01 6 38980098 38980098 G C DNAH8 Silent p.L4276L 0.11 TCGA-R3-A69X-01 6 43420842 43420842 C T DLK2 Missense_Mutation p.E58K 0.20 deleterious(0.03) possibly_damaging(0.831) TCGA-R3-A69X-01 6 46659939 46659939 G C TDRD6 Missense_Mutation p.M1358I 0.12 tolerated(0.25) benign(0.001) TCGA-R3-A69X-01 6 97053836 97053836 G C FHL5 Missense_Mutation p.E131D 0.05 tolerated(0.53) possibly_damaging(0.791) TCGA-R3-A69X-01 7 107253856 107253856 G C BCAP29 Silent p.L223L 0.06 TCGA-R3-A69X-01 7 115624534 115624534 G C TFEC 5'UTR 0.16 TCGA-R3-A69X-01 7 138591729 138591729 G C KIAA1549 Silent p.L1132L 0.10 TCGA-R3-A69X-01 7 139164512 139164512 C G KLRG2 Missense_Mutation p.R289T 0.17 tolerated(0.07) benign(0.051) TCGA-R3-A69X-01 7 141464637 141464637 G A TAS2R3 Missense_Mutation p.E227K 0.25 deleterious(0.04) benign(0.393) TCGA-R3-A69X-01 7 150711256 150711256 G A NOS3 Silent p.%3D 0.15 TCGA-R3-A69X-01 7 150774841 150774841 G A FASTK Missense_Mutation p.R356C 0.11 deleterious(0) probably_damaging(0.977) TCGA-R3-A69X-01 7 155094094 155094094 T C INSIG1 Missense_Mutation p.I224T 0.19 deleterious(0.02) probably_damaging(0.909) TCGA-R3-A69X-01 7 23571498 23571498 G A TRA2A 5'UTR 0.21 TCGA-R3-A69X-01 7 44180381 44180381 G A MYL7 Silent p.F41F 0.09 TCGA-R3-A69X-01 7 87839446 87839446 C A SRI Splice_Site p.X84_splice 0.10 TCGA-R3-A69X-01 7 91864941 91864941 C T KRIT1 Missense_Mutation p.A169T 0.15 tolerated(0.94) benign(0.001) TCGA-R3-A69X-01 8 104778723 104778723 C T RIMS2 Missense_Mutation p.S219L 0.17 deleterious_low_confidence(0.05) benign(0.205) TCGA-R3-A69X-01 8 106813826 106813826 G C ZFPM2 Missense_Mutation p.D506H 0.06 deleterious(0) probably_damaging(0.999) TCGA-R3-A69X-01 8 109796439 109796439 C G TMEM74 Missense_Mutation p.E297Q 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-R3-A69X-01 8 144671913 144671913 C T EEF1D Silent p.L113L 0.11 TCGA-R3-A69X-01 8 145112928 145112928 G T OPLAH Missense_Mutation p.S358Y 0.17 deleterious(0) probably_damaging(1) TCGA-R3-A69X-01 8 145649236 145649236 G T VPS28 3'UTR 0.06 TCGA-R3-A69X-01 8 1497653 1497654 - CAACA DLGAP2 Frame_Shift_Ins p.N267Tfs*15 0.10 TCGA-R3-A69X-01 8 54730081 54730081 G A ATP6V1H Nonsense_Mutation p.Q106* 0.13 TCGA-R3-A69X-01 8 59058879 59058879 G C FAM110B Silent p.L30L 0.09 TCGA-R3-A69X-01 8 59515917 59515917 C G NSMAF Missense_Mutation p.E330D 0.26 tolerated(0.13) benign(0.105) TCGA-R3-A69X-01 8 61743070 61743070 G A CHD7 Missense_Mutation p.V1238I 0.24 probably_damaging(0.995) TCGA-R3-A69X-01 8 95178092 95178092 G C CDH17 Silent p.L393L 0.20 TCGA-R3-A69X-01 9 107367246 107367246 G C OR13C2 Missense_Mutation p.I221M 0.12 deleterious(0) probably_damaging(0.999) TCGA-R3-A69X-01 9 113704109 113704109 C G LPAR1 Missense_Mutation p.D129H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-R3-A69X-01 9 114305095 114305095 G C ZNF483 Missense_Mutation p.R627T 0.32 deleterious(0) possibly_damaging(0.749) TCGA-R3-A69X-01 9 135553409 135553409 G A GTF3C4 Missense_Mutation p.A135T 0.24 tolerated(0.85) benign(0.001) TCGA-R3-A69X-01 9 6413479 6413479 C G UHRF2 5'UTR 0.30 TCGA-R3-A69X-01 9 74863251 74863251 C A GDA Nonsense_Mutation p.S453* 0.24 TCGA-R3-A69X-01 9 93606489 93606489 C T SYK Silent p.L103L 0.20 TCGA-R3-A69X-01 X 123184055 123184055 C T STAG2 Nonsense_Mutation p.R305* 0.25 TCGA-R3-A69X-01 X 151124030 151124030 G C GABRE Missense_Mutation p.S316C 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-R3-A69X-01 X 152937060 152937060 G C PNCK Missense_Mutation p.S244C 0.19 deleterious(0) probably_damaging(0.967) TCGA-R3-A69X-01 X 153178221 153178221 C T ARHGAP4 Missense_Mutation p.R532H 0.16 tolerated(0.09) benign(0.014) TCGA-R3-A69X-01 X 49055424 49055424 C T SYP Intron 0.22 TCGA-R3-A69X-01 X 49084710 49084710 C T CACNA1F Intron 0.15 TCGA-R3-A69X-01 X 72433812 72433812 C T NAP1L2 Missense_Mutation p.E173K 0.18 deleterious(0.03) possibly_damaging(0.559) TCGA-R3-A69X-01 X 86773151 86773151 G C KLHL4 Missense_Mutation p.Q85H 0.14 tolerated_low_confidence(0.11) benign(0.01) TCGA-S5-A6DX-01 10 100481477 100481477 C G HPSE2 Missense_Mutation p.R298T 0.13 tolerated(0.25) probably_damaging(0.999) TCGA-S5-A6DX-01 10 104404705 104404705 G C TRIM8 Missense_Mutation p.E111Q 0.50 deleterious(0.03) benign(0.183) TCGA-S5-A6DX-01 10 107012653 107012653 G T SORCS3 Missense_Mutation p.D1076Y 0.30 deleterious(0) possibly_damaging(0.597) TCGA-S5-A6DX-01 10 114044383 114044383 G T TECTB Missense_Mutation p.G56V 0.38 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 10 118387354 118387354 G C PNLIPRP2 Missense_Mutation p.R182S 0.38 tolerated(0.52) benign(0.19) TCGA-S5-A6DX-01 10 12110991 12110991 C T DHTKD1 5'UTR 0.11 TCGA-S5-A6DX-01 10 12110997 12110997 C T DHTKD1 5'UTR 0.10 TCGA-S5-A6DX-01 10 12111019 12111019 G A DHTKD1 5'UTR 0.18 TCGA-S5-A6DX-01 10 121586170 121586170 C T INPP5F Silent p.I759I 0.29 TCGA-S5-A6DX-01 10 122633428 122633428 G A WDR11 Missense_Mutation p.E517K 0.20 tolerated(0.15) benign(0.119) TCGA-S5-A6DX-01 10 126311679 126311679 C T FAM53B 3'UTR 0.28 TCGA-S5-A6DX-01 10 127724865 127724865 C G ADAM12 Missense_Mutation p.Q796H 0.28 tolerated(0.1) benign(0.021) TCGA-S5-A6DX-01 10 134218766 134218766 G T PWWP2B Missense_Mutation p.K254N 0.33 deleterious(0) possibly_damaging(0.776) TCGA-S5-A6DX-01 10 16967370 16967370 A G CUBN Silent p.N2172N 0.34 TCGA-S5-A6DX-01 10 27450029 27450029 G C MASTL Missense_Mutation p.L157F 0.13 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 10 28030298 28030298 G A MKX Silent p.L108L 0.34 TCGA-S5-A6DX-01 10 34985320 34985320 G C PARD3 Missense_Mutation p.R50G 0.13 deleterious(0.03) probably_damaging(0.995) TCGA-S5-A6DX-01 10 35320464 35320464 G A CUL2 Silent p.F437F 0.13 TCGA-S5-A6DX-01 10 44112171 44112171 C G ZNF485 Nonsense_Mutation p.S227* 0.16 TCGA-S5-A6DX-01 10 5789627 5789627 C T FAM208B Nonsense_Mutation p.R1415* 0.16 TCGA-S5-A6DX-01 10 5959560 5959560 G A FBXO18 Silent p.L679L 0.20 TCGA-S5-A6DX-01 10 63188709 63188709 C A TMEM26 Nonsense_Mutation p.E194* 0.18 TCGA-S5-A6DX-01 10 68535253 68535253 C T CTNNA3 Silent p.L359L 0.13 TCGA-S5-A6DX-01 10 70332369 70332369 C G TET1 Missense_Mutation p.Q92E 0.31 tolerated(0.05) benign(0.035) TCGA-S5-A6DX-01 10 70517048 70517048 C G CCAR1 Intron 0.21 TCGA-S5-A6DX-01 10 70748838 70748838 G A KIAA1279 Missense_Mutation p.E84K 0.34 tolerated_low_confidence(0.2) benign(0.111) TCGA-S5-A6DX-01 10 72513661 72513661 G A ADAMTS14 Silent p.K948K 0.44 TCGA-S5-A6DX-01 10 75101285 75101285 C G TTC18 Missense_Mutation p.E222Q 0.13 deleterious(0) probably_damaging(0.994) TCGA-S5-A6DX-01 10 75185617 75185617 C T MSS51 Missense_Mutation p.E341K 0.15 deleterious(0) possibly_damaging(0.498) TCGA-S5-A6DX-01 10 75567715 75567715 G A NDST2 Silent p.L144L 0.26 TCGA-S5-A6DX-01 10 7829785 7829785 C T KIN Missense_Mutation p.E38K 0.17 deleterious(0) possibly_damaging(0.558) TCGA-S5-A6DX-01 10 79566551 79566551 C T DLG5 Silent p.Q1644Q 0.34 TCGA-S5-A6DX-01 10 8115996 8115996 C G GATA3 3'UTR 0.27 TCGA-S5-A6DX-01 10 81901871 81901871 C T PLAC9 Missense_Mutation p.S33L 0.31 tolerated(0.54) benign(0.008) TCGA-S5-A6DX-01 10 88854260 88854260 C T GLUD1 Silent p.L89L 0.32 TCGA-S5-A6DX-01 10 90122397 90122397 C T RNLS Silent p.T204T 0.32 TCGA-S5-A6DX-01 10 90342951 90342951 G A RNLS 5'UTR 0.39 TCGA-S5-A6DX-01 10 90436019 90436019 T C LIPF Silent p.N324N 0.39 TCGA-S5-A6DX-01 10 94373179 94373179 G A KIF11 Missense_Mutation p.D279N 0.22 deleterious(0) probably_damaging(0.963) TCGA-S5-A6DX-01 10 94834614 94834614 G C CYP26A1 Missense_Mutation p.E165Q 0.13 tolerated(0.19) benign(0.026) TCGA-S5-A6DX-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.39 TCGA-S5-A6DX-01 10 97976466 97976466 C G BLNK Missense_Mutation p.D184H 0.28 deleterious(0.01) possibly_damaging(0.614) TCGA-S5-A6DX-01 10 98287030 98287030 G C TM9SF3 Missense_Mutation p.Q548E 0.24 deleterious(0) probably_damaging(0.979) TCGA-S5-A6DX-01 11 101342892 101342892 G A TRPC6 Silent p.I727I 0.24 TCGA-S5-A6DX-01 11 108043491 108043491 G C NPAT Silent p.L740L 0.23 TCGA-S5-A6DX-01 11 111965577 111965577 G A SDHD Silent p.Q121Q 0.30 TCGA-S5-A6DX-01 11 118083686 118083686 G A AMICA1 Intron 0.22 TCGA-S5-A6DX-01 11 118886416 118886416 C G CCDC84 3'UTR 0.18 TCGA-S5-A6DX-01 11 120292533 120292533 G A ARHGEF12 Missense_Mutation p.G107E 0.20 deleterious(0) probably_damaging(0.988) TCGA-S5-A6DX-01 11 122659895 122659895 G A UBASH3B Missense_Mutation p.E287K 0.32 tolerated(0.07) possibly_damaging(0.908) TCGA-S5-A6DX-01 11 124761614 124761614 G A ROBO4 Silent p.L544L 0.19 TCGA-S5-A6DX-01 11 16824788 16824788 C G PLEKHA7 Missense_Mutation p.E688Q 0.31 deleterious(0.05) probably_damaging(0.977) TCGA-S5-A6DX-01 11 31669325 31669325 G C ELP4 Missense_Mutation p.D322H 0.40 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 11 34472597 34472597 G C CAT Missense_Mutation p.E101Q 0.44 tolerated(0.1) possibly_damaging(0.755) TCGA-S5-A6DX-01 11 35515735 35515735 G A PAMR1 Silent p.C53C 0.36 TCGA-S5-A6DX-01 11 45947770 45947770 C T GYLTL1B Intron 0.40 TCGA-S5-A6DX-01 11 46563836 46563836 G A AMBRA1 Silent p.F487F 0.31 TCGA-S5-A6DX-01 11 49598446 49598446 G A RP11-707M1.1 RNA 0.31 TCGA-S5-A6DX-01 11 56058048 56058048 C G OR8H1 Missense_Mutation p.R164T 0.30 tolerated(0.29) benign(0.013) TCGA-S5-A6DX-01 11 57095840 57095840 C T SSRP1 Silent p.E514E 0.27 TCGA-S5-A6DX-01 11 57095842 57095842 C T SSRP1 Missense_Mutation p.E514K 0.27 tolerated(0.52) benign(0.096) TCGA-S5-A6DX-01 11 57156498 57156498 C G RP11-872D17.8 Silent p.T222T 0.20 TCGA-S5-A6DX-01 11 57467431 57467431 C T ZDHHC5 Silent p.L692L 0.33 TCGA-S5-A6DX-01 11 58722252 58722252 G T GLYATL1 Missense_Mutation p.D97Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-S5-A6DX-01 11 59343929 59343929 G C OSBP 3'UTR 0.24 TCGA-S5-A6DX-01 11 59828652 59828652 G C MS4A3 Missense_Mutation p.D7H 0.26 tolerated(0.11) benign(0.016) TCGA-S5-A6DX-01 11 59828765 59828765 G C MS4A3 Missense_Mutation p.Q44H 0.29 tolerated(0.58) possibly_damaging(0.907) TCGA-S5-A6DX-01 11 61081359 61081359 G C DDB1 Missense_Mutation p.F612L 0.33 tolerated(0.31) benign(0.132) TCGA-S5-A6DX-01 11 61213517 61213517 G C SDHAF2 Missense_Mutation p.E159Q 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-S5-A6DX-01 11 62362912 62362912 G A MTA2 Missense_Mutation p.P436L 0.19 tolerated(0.34) benign(0.002) TCGA-S5-A6DX-01 11 62362915 62362915 G T MTA2 Missense_Mutation p.S435Y 0.19 tolerated(0.6) benign(0.259) TCGA-S5-A6DX-01 11 63173968 63173968 G C SLC22A9 Splice_Site p.X358_splice 0.25 TCGA-S5-A6DX-01 11 63706550 63706550 G C NAA40 5'UTR 0.21 TCGA-S5-A6DX-01 11 63885483 63885483 G T FLRT1 Nonsense_Mutation p.E582* 0.29 TCGA-S5-A6DX-01 11 63987775 63987775 G C FERMT3 Missense_Mutation p.E434Q 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-S5-A6DX-01 11 66260358 66260358 C G DPP3 Missense_Mutation p.P387R 0.29 deleterious(0) probably_damaging(0.993) TCGA-S5-A6DX-01 11 66359950 66359950 G C CCDC87 Missense_Mutation p.F179L 0.33 tolerated(0.08) probably_damaging(0.991) TCGA-S5-A6DX-01 11 67079350 67079350 G A SSH3 Missense_Mutation p.E658K 0.18 tolerated_low_confidence(0.1) benign(0.006) TCGA-S5-A6DX-01 11 67171804 67171804 G T TBC1D10C Missense_Mutation p.G44V 0.30 tolerated(0.12) possibly_damaging(0.807) TCGA-S5-A6DX-01 11 70224295 70224303 ATGGACGGT - PPFIA1 Splice_Site p.X1183_splice 0.27 TCGA-S5-A6DX-01 11 77378123 77378123 C T RSF1 Missense_Mutation p.E1389K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-S5-A6DX-01 11 9225771 9225771 G A DENND5A Missense_Mutation p.R129W 0.35 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 11 92532738 92532738 G C FAT3 Missense_Mutation p.D2187H 0.26 probably_damaging(0.982) TCGA-S5-A6DX-01 11 92534813 92534813 G C FAT3 Missense_Mutation p.L2878F 0.29 probably_damaging(0.972) TCGA-S5-A6DX-01 11 94800429 94800429 G A SRSF8 Missense_Mutation p.M13I 0.34 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-S5-A6DX-01 12 102547646 102547646 G A PARPBP Splice_Site p.X130_splice 0.26 TCGA-S5-A6DX-01 12 106977137 106977137 C A RP11-144F15.1 Intron 0.27 TCGA-S5-A6DX-01 12 109841883 109841883 G C MYO1H Missense_Mutation p.E267Q 0.33 tolerated(0.24) benign(0.145) TCGA-S5-A6DX-01 12 110565215 110565215 C T IFT81 Silent p.D10D 0.22 TCGA-S5-A6DX-01 12 112481443 112481443 C G NAA25 Missense_Mutation p.E746Q 0.25 tolerated(0.13) benign(0.091) TCGA-S5-A6DX-01 12 112608210 112608210 C T HECTD4 Silent p.L3847L 0.32 TCGA-S5-A6DX-01 12 113384662 113384662 G A OAS3 Missense_Mutation p.G251S 0.15 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 12 117604822 117604822 C T FBXO21 Silent p.L358L 0.22 TCGA-S5-A6DX-01 12 121972449 121972449 C T KDM2B Missense_Mutation p.D244N 0.18 deleterious(0) probably_damaging(0.992) TCGA-S5-A6DX-01 12 123046497 123046497 C T KNTC1 Silent p.L506L 0.24 TCGA-S5-A6DX-01 12 13208698 13208698 C T KIAA1467 Missense_Mutation p.S84L 0.13 tolerated(0.29) benign(0.003) TCGA-S5-A6DX-01 12 13208741 13208741 G A KIAA1467 Silent p.L98L 0.16 TCGA-S5-A6DX-01 12 132414283 132414283 C T PUS1 Missense_Mutation p.R6C 0.14 deleterious_low_confidence(0) benign(0.034) TCGA-S5-A6DX-01 12 14577912 14577912 G C ATF7IP Missense_Mutation p.D355H 0.26 tolerated_low_confidence(0.34) probably_damaging(0.934) TCGA-S5-A6DX-01 12 14578146 14578146 G C ATF7IP Missense_Mutation p.D433H 0.20 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-S5-A6DX-01 12 14578263 14578263 G T ATF7IP Nonsense_Mutation p.E472* 0.24 TCGA-S5-A6DX-01 12 14947666 14947666 G C WBP11 Missense_Mutation p.P176A 0.23 tolerated(0.12) unknown(0) TCGA-S5-A6DX-01 12 21032479 21032479 G C SLCO1B3 Silent p.S415S 0.17 TCGA-S5-A6DX-01 12 30872128 30872128 G T CAPRIN2 Intron 0.22 TCGA-S5-A6DX-01 12 31854800 31854800 C G AMN1 Missense_Mutation p.E105Q 0.21 tolerated(0.15) benign(0.227) TCGA-S5-A6DX-01 12 33532834 33532834 C T SYT10 Missense_Mutation p.R478Q 0.22 deleterious(0) benign(0.093) TCGA-S5-A6DX-01 12 432923 432925 CTT - KDM5A In_Frame_Del p.E664del 0.09 TCGA-S5-A6DX-01 12 45567363 45567363 C T PLEKHA8P1 RNA 0.10 TCGA-S5-A6DX-01 12 46318605 46318605 C T SCAF11 Missense_Mutation p.S1271N 0.18 tolerated(0.73) benign(0.005) TCGA-S5-A6DX-01 12 49420547 49420547 C T KMT2D Missense_Mutation p.E5068K 0.34 unknown(0) TCGA-S5-A6DX-01 12 49443510 49443510 C T KMT2D Silent p.E1287E 0.21 TCGA-S5-A6DX-01 12 52314580 52314580 G A ACVRL1 Nonsense_Mutation p.W472* 0.20 TCGA-S5-A6DX-01 12 52885487 52885487 C T KRT6A Missense_Mutation p.E192K 0.05 deleterious(0) possibly_damaging(0.842) TCGA-S5-A6DX-01 12 52912911 52912911 C T KRT5 Missense_Mutation p.D197N 0.14 deleterious(0) probably_damaging(0.911) TCGA-S5-A6DX-01 12 53295784 53295784 G A KRT8 Nonsense_Mutation p.R161* 0.19 TCGA-S5-A6DX-01 12 56031596 56031596 G A OR10P1 Silent p.K307K 0.30 TCGA-S5-A6DX-01 12 57345867 57345867 G A RDH16 Silent p.F300F 0.30 TCGA-S5-A6DX-01 12 57423036 57423036 G A MYO1A Missense_Mutation p.S962L 0.23 tolerated(0.32) benign(0.005) TCGA-S5-A6DX-01 12 57595639 57595639 C A LRP1 Missense_Mutation p.D3515E 0.19 probably_damaging(0.986) TCGA-S5-A6DX-01 12 57864360 57864360 G C GLI1 Missense_Mutation p.G613R 0.23 tolerated(0.06) probably_damaging(1) TCGA-S5-A6DX-01 12 57870686 57870686 G A ARHGAP9 Nonsense_Mutation p.R311* 0.21 TCGA-S5-A6DX-01 12 58006895 58006895 G A ARHGEF25 Missense_Mutation p.E133K 0.31 tolerated(0.12) possibly_damaging(0.716) TCGA-S5-A6DX-01 12 58006983 58006983 G C ARHGEF25 Intron 0.13 TCGA-S5-A6DX-01 12 58007499 58007499 G C ARHGEF25 Missense_Mutation p.E209Q 0.24 tolerated(0.25) probably_damaging(0.983) TCGA-S5-A6DX-01 12 58142142 58142142 C G TSPAN31 3'Flank 0.45 TCGA-S5-A6DX-01 12 58149663 58149663 G C MARCH9 Missense_Mutation p.E118Q 0.19 deleterious(0.01) probably_damaging(0.925) TCGA-S5-A6DX-01 12 65640032 65640032 C G LEMD3 Nonsense_Mutation p.S888* 0.13 TCGA-S5-A6DX-01 12 675215 675215 C T NINJ2 Missense_Mutation p.E101K 0.28 deleterious(0.04) benign(0.287) TCGA-S5-A6DX-01 12 67663552 67663552 G A CAND1 Missense_Mutation p.D19N 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-S5-A6DX-01 12 6886587 6886587 C G LAG3 Silent p.L405L 0.26 TCGA-S5-A6DX-01 12 76763484 76763484 C A OSBPL8 Nonsense_Mutation p.E725* 0.20 TCGA-S5-A6DX-01 12 7967062 7967062 G T SLC2A14 Missense_Mutation p.F471L 0.29 deleterious(0.01) possibly_damaging(0.476) TCGA-S5-A6DX-01 12 95611102 95611102 G C FGD6 5'UTR 0.33 TCGA-S5-A6DX-01 12 97114300 97114300 C T C12orf55 Nonsense_Mutation p.Q2308* 0.38 TCGA-S5-A6DX-01 13 113513759 113513759 C G ATP11A Nonsense_Mutation p.S907* 0.34 TCGA-S5-A6DX-01 13 114135050 114135050 C T DCUN1D2 Missense_Mutation p.D77N 0.30 tolerated(0.1) benign(0.009) TCGA-S5-A6DX-01 13 23910518 23910518 G T SACS Silent p.V2499V 0.24 TCGA-S5-A6DX-01 13 32835834 32835834 G C FRY Missense_Mutation p.E2500Q 0.13 tolerated(0.68) benign(0.049) TCGA-S5-A6DX-01 13 32900416 32900416 G A BRCA2 Silent p.V171V 0.26 TCGA-S5-A6DX-01 13 39588230 39588230 G C PROSER1 Missense_Mutation p.R387G 0.13 tolerated_low_confidence(0.09) benign(0.209) TCGA-S5-A6DX-01 13 52972099 52972099 C T THSD1 Missense_Mutation p.G97S 0.44 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 13 67801764 67801764 G C PCDH9 Missense_Mutation p.S270C 0.24 deleterious(0.01) probably_damaging(1) TCGA-S5-A6DX-01 13 73649902 73649902 G A KLF5 Missense_Mutation p.D418N 0.25 deleterious(0) probably_damaging(0.971) TCGA-S5-A6DX-01 13 77595839 77595839 G C FBXL3 Missense_Mutation p.L53V 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-S5-A6DX-01 13 77725015 77725015 G C MYCBP2 Missense_Mutation p.Q2291E 0.28 benign(0.006) TCGA-S5-A6DX-01 13 77842012 77842012 C T MYCBP2 Missense_Mutation p.E403K 0.10 possibly_damaging(0.708) TCGA-S5-A6DX-01 13 79190637 79190637 G C RNF219 Nonsense_Mutation p.S420* 0.34 TCGA-S5-A6DX-01 13 95055364 95055364 G A GPC6 Missense_Mutation p.D521N 0.15 tolerated(0.51) benign(0.012) TCGA-S5-A6DX-01 14 100758893 100758893 G C SLC25A29 Silent p.V213V 0.15 TCGA-S5-A6DX-01 14 102661327 102661327 C G WDR20 Missense_Mutation p.P101R 0.15 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 14 105219632 105219632 G A SIVA1 Missense_Mutation p.E32K 0.40 deleterious(0.02) possibly_damaging(0.881) TCGA-S5-A6DX-01 14 105242078 105242078 C T AKT1 Missense_Mutation p.E116K 0.53 tolerated(0.09) probably_damaging(0.998) TCGA-S5-A6DX-01 14 106091255 106091255 C T IGHG4 Silent p.E213E 0.27 TCGA-S5-A6DX-01 14 20344920 20344920 C T OR4K2 Missense_Mutation p.T165M 0.10 deleterious(0.01) benign(0.104) TCGA-S5-A6DX-01 14 21238518 21238518 A G EDDM3B Missense_Mutation p.Y70C 0.16 deleterious(0) probably_damaging(0.996) TCGA-S5-A6DX-01 14 21822598 21822598 C T SUPT16H Missense_Mutation p.G921D 0.18 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 14 24610521 24610521 G A EMC9 5'UTR 0.20 TCGA-S5-A6DX-01 14 24710487 24710487 G A TINF2 Silent p.L144L 0.33 TCGA-S5-A6DX-01 14 24776674 24776674 G A CIDEB Missense_Mutation p.S30L 0.11 tolerated(0.17) benign(0.437) TCGA-S5-A6DX-01 14 57268974 57268974 G A OTX2 Missense_Mutation p.P125S 0.46 tolerated(0.06) possibly_damaging(0.465) TCGA-S5-A6DX-01 14 57938268 57938268 C T C14orf105 Silent p.V232V 0.42 TCGA-S5-A6DX-01 14 60588018 60588018 G C PCNXL4 Splice_Site p.X448_splice 0.38 TCGA-S5-A6DX-01 14 64935800 64935800 C G AKAP5 Missense_Mutation p.L230V 0.45 tolerated(0.09) benign(0.256) TCGA-S5-A6DX-01 14 86087881 86087881 G A FLRT2 Nonsense_Mutation p.W8* 0.37 TCGA-S5-A6DX-01 14 94526466 94526466 C G DDX24 Missense_Mutation p.E631Q 0.51 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 15 25415783 25415783 C A SNORD115-3 5'Flank 0.28 TCGA-S5-A6DX-01 15 27018090 27018090 C G GABRB3 Missense_Mutation p.G7A 0.36 tolerated_low_confidence(0.76) benign(0.011) TCGA-S5-A6DX-01 15 28358811 28358811 C G HERC2 Missense_Mutation p.D4643H 0.27 probably_damaging(0.982) TCGA-S5-A6DX-01 15 28389103 28389103 C T HERC2 Silent p.L3778L 0.33 TCGA-S5-A6DX-01 15 33358786 33358786 C T FMN1 Missense_Mutation p.E434K 0.31 deleterious(0) unknown(0) TCGA-S5-A6DX-01 15 39879605 39879605 C T THBS1 Missense_Mutation p.T393M 0.22 deleterious(0) possibly_damaging(0.544) TCGA-S5-A6DX-01 15 40587246 40587246 C G PLCB2 Missense_Mutation p.Q599H 0.22 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 15 40698050 40698050 C T IVD Silent p.L11L 0.27 TCGA-S5-A6DX-01 15 41107939 41107939 G A PPP1R14D Missense_Mutation p.S170L 0.15 tolerated_low_confidence(0.35) benign(0.307) TCGA-S5-A6DX-01 15 41688867 41688867 C G NDUFAF1 Missense_Mutation p.E131Q 0.26 deleterious(0.04) possibly_damaging(0.904) TCGA-S5-A6DX-01 15 42160366 42160366 C G SPTBN5 Missense_Mutation p.Q2036H 0.24 possibly_damaging(0.853) TCGA-S5-A6DX-01 15 42481342 42481342 C G VPS39 Missense_Mutation p.K104N 0.19 deleterious(0) probably_damaging(0.991) TCGA-S5-A6DX-01 15 42632057 42632057 A G GANC Silent p.P678P 0.31 TCGA-S5-A6DX-01 15 42651896 42651896 C G CAPN3 5'UTR 0.24 TCGA-S5-A6DX-01 15 43827141 43827141 C G PPIP5K1 Missense_Mutation p.E1345Q 0.29 deleterious_low_confidence(0.02) benign(0.057) TCGA-S5-A6DX-01 15 44816352 44816352 G A CTDSPL2 Missense_Mutation p.D461N 0.35 deleterious(0.03) benign(0.03) TCGA-S5-A6DX-01 15 49048117 49048117 C T CEP152 Missense_Mutation p.D1110N 0.26 tolerated(0.58) benign(0.002) TCGA-S5-A6DX-01 15 49926832 49926832 G T DTWD1 Missense_Mutation p.D170Y 0.19 deleterious(0.01) benign(0.285) TCGA-S5-A6DX-01 15 50475075 50475075 G A SLC27A2 Missense_Mutation p.G151R 0.30 deleterious(0.05) benign(0.104) TCGA-S5-A6DX-01 15 51350185 51350185 C T TNFAIP8L3 Missense_Mutation p.D258N 0.24 tolerated(0.27) benign(0.018) TCGA-S5-A6DX-01 15 52901968 52901968 C G FAM214A Missense_Mutation p.L381F 0.24 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 15 52902039 52902039 C T FAM214A Missense_Mutation p.E358K 0.25 tolerated(0.06) benign(0.021) TCGA-S5-A6DX-01 15 52902567 52902567 C T FAM214A Missense_Mutation p.D182N 0.39 tolerated(0.07) benign(0.173) TCGA-S5-A6DX-01 15 52903803 52903803 C T FAM214A Missense_Mutation p.E125K 0.30 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 15 52903947 52903947 C G FAM214A Missense_Mutation p.E77Q 0.23 deleterious(0.01) possibly_damaging(0.864) TCGA-S5-A6DX-01 15 59381909 59381909 C G RNF111 Nonsense_Mutation p.S874* 0.25 TCGA-S5-A6DX-01 15 65563270 65563270 C T PARP16 Intron 0.27 TCGA-S5-A6DX-01 15 65748662 65748662 C G DPP8 Missense_Mutation p.L689F 0.25 deleterious(0) probably_damaging(0.977) TCGA-S5-A6DX-01 15 66618548 66618548 G A DIS3L Missense_Mutation p.E683K 0.28 deleterious(0) probably_damaging(0.969) TCGA-S5-A6DX-01 15 66840816 66840816 G A LCTL 3'UTR 0.29 TCGA-S5-A6DX-01 15 67073738 67073738 C T SMAD6 Silent p.P452P 0.34 TCGA-S5-A6DX-01 15 67473751 67473751 C G SMAD3 Silent p.V277V 0.34 TCGA-S5-A6DX-01 15 72837276 72837276 C G ARIH1 Missense_Mutation p.Q187E 0.21 tolerated(1) benign(0) TCGA-S5-A6DX-01 15 74963867 74963867 G C EDC3 Nonsense_Mutation p.S138* 0.22 TCGA-S5-A6DX-01 15 75763167 75763167 C G PTPN9 Missense_Mutation p.E405Q 0.32 tolerated(0.08) possibly_damaging(0.677) TCGA-S5-A6DX-01 15 75782611 75782611 C G PTPN9 Missense_Mutation p.G334R 0.23 tolerated(0.1) benign(0.145) TCGA-S5-A6DX-01 15 75798062 75798062 C A PTPN9 Nonsense_Mutation p.E308* 0.26 TCGA-S5-A6DX-01 15 75798080 75798080 C G PTPN9 Missense_Mutation p.G302R 0.22 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 15 77764148 77764148 G A HMG20A Missense_Mutation p.D203N 0.25 tolerated(1) benign(0.001) TCGA-S5-A6DX-01 15 79749457 79749457 A G KIAA1024 Missense_Mutation p.K323R 0.29 tolerated(0.38) benign(0.01) TCGA-S5-A6DX-01 15 83331641 83331641 C A AP3B2 Nonsense_Mutation p.E861* 0.14 TCGA-S5-A6DX-01 15 83455358 83455358 C T FSD2 Missense_Mutation p.D214N 0.16 deleterious(0.02) possibly_damaging(0.71) TCGA-S5-A6DX-01 15 84286834 84286834 G A SH3GL3 Missense_Mutation p.G280D 0.31 tolerated(0.33) possibly_damaging(0.543) TCGA-S5-A6DX-01 15 84706576 84706576 G C ADAMTSL3 3'UTR 0.17 TCGA-S5-A6DX-01 15 90119340 90119340 G A TICRR Missense_Mutation p.E175K 0.29 tolerated(0.08) benign(0.239) TCGA-S5-A6DX-01 15 90270462 90270462 C T WDR93 Missense_Mutation p.H319Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-S5-A6DX-01 15 90631943 90631943 C T IDH2 Missense_Mutation p.G137E 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-S5-A6DX-01 16 10626716 10626716 G C EMP2 3'UTR 0.27 TCGA-S5-A6DX-01 16 12172749 12172749 C T SNX29 Missense_Mutation p.S460L 0.29 tolerated(0.06) benign(0.05) TCGA-S5-A6DX-01 16 1257843 1257843 G C CACNA1H Missense_Mutation p.R1046T 0.24 deleterious(0.02) benign(0.08) TCGA-S5-A6DX-01 16 15820798 15820798 C T MYH11 Silent p.K1262K 0.25 TCGA-S5-A6DX-01 16 1818252 1818252 C T MAPK8IP3 Silent p.I1204I 0.31 TCGA-S5-A6DX-01 16 1818934 1818934 C T MAPK8IP3 3'UTR 0.40 TCGA-S5-A6DX-01 16 18847502 18847502 G C SMG1 Missense_Mutation p.L2604V 0.38 deleterious(0) probably_damaging(0.967) TCGA-S5-A6DX-01 16 18882728 18882728 G C SMG1 Missense_Mutation p.L754V 0.22 tolerated(0.35) possibly_damaging(0.556) TCGA-S5-A6DX-01 16 21974206 21974206 C T UQCRC2 Missense_Mutation p.H172Y 0.26 tolerated(1) benign(0) TCGA-S5-A6DX-01 16 27720232 27720232 G A KIAA0556 Silent p.R532R 0.32 TCGA-S5-A6DX-01 16 30516709 30516709 G T ITGAL Splice_Site p.X765_splice 0.17 TCGA-S5-A6DX-01 16 30566514 30566514 G A ZNF764 3'UTR 0.10 TCGA-S5-A6DX-01 16 30772537 30772537 C A C16orf93 Missense_Mutation p.R73L 0.18 deleterious(0.01) benign(0.132) TCGA-S5-A6DX-01 16 30941527 30941527 C T FBXL19 Missense_Mutation p.S328L 0.37 tolerated(0.12) possibly_damaging(0.784) TCGA-S5-A6DX-01 16 31159963 31159963 C G PRSS36 Silent p.S102S 0.27 TCGA-S5-A6DX-01 16 32890773 32890773 G A SLC6A10P RNA 0.09 TCGA-S5-A6DX-01 16 3304655 3304655 C G MEFV Missense_Mutation p.G138A 0.50 tolerated(0.1) benign(0.383) TCGA-S5-A6DX-01 16 48117849 48117849 C T ABCC12 Missense_Mutation p.D1322N 0.23 deleterious(0) possibly_damaging(0.855) TCGA-S5-A6DX-01 16 49764791 49764791 C G ZNF423 Missense_Mutation p.E56D 0.19 tolerated_low_confidence(0.35) benign(0.008) TCGA-S5-A6DX-01 16 50707913 50707913 C T SNX20 Missense_Mutation p.D119N 0.16 deleterious(0) probably_damaging(0.998) TCGA-S5-A6DX-01 16 5105266 5105266 T C C16orf89 Silent p.E283E 0.17 TCGA-S5-A6DX-01 16 5112508 5112508 C G C16orf89 Silent p.V92V 0.30 TCGA-S5-A6DX-01 16 54967643 54967643 C G IRX5 Missense_Mutation p.S437C 0.31 deleterious(0.01) unknown(0) TCGA-S5-A6DX-01 16 55690754 55690754 G A SLC6A2 Missense_Mutation p.D50N 0.27 tolerated(0.57) benign(0) TCGA-S5-A6DX-01 16 57490841 57490841 A G COQ9 Splice_Site p.X174_splice 0.20 TCGA-S5-A6DX-01 16 61689438 61689438 G A CDH8 Silent p.V614V 0.29 TCGA-S5-A6DX-01 16 67961379 67961379 C G PSKH1 Missense_Mutation p.S370C 0.28 tolerated(0.06) benign(0.002) TCGA-S5-A6DX-01 16 70508129 70508129 G A FUK Silent p.R625R 0.21 TCGA-S5-A6DX-01 16 70508570 70508570 G C FUK Missense_Mutation p.E710Q 0.29 deleterious(0.04) benign(0.025) TCGA-S5-A6DX-01 16 70711734 70711734 C T MTSS1L Silent p.L231L 0.18 TCGA-S5-A6DX-01 16 75485607 75485607 C T TMEM170A Silent p.L88L 0.23 TCGA-S5-A6DX-01 16 75665431 75665431 C G KARS Missense_Mutation p.E407Q 0.26 deleterious(0.04) benign(0.352) TCGA-S5-A6DX-01 16 78011633 78011633 G C VAT1L 3'UTR 0.26 TCGA-S5-A6DX-01 16 81712222 81712222 C T CMIP Silent p.I459I 0.31 TCGA-S5-A6DX-01 16 84900629 84900629 C G CRISPLD2 Missense_Mutation p.S279C 0.28 deleterious(0.04) possibly_damaging(0.469) TCGA-S5-A6DX-01 16 87723369 87723369 C G JPH3 Missense_Mutation p.S468C 0.31 deleterious(0.04) possibly_damaging(0.848) TCGA-S5-A6DX-01 16 87921874 87921874 G A CA5A Missense_Mutation p.S260F 0.24 deleterious(0.01) possibly_damaging(0.893) TCGA-S5-A6DX-01 16 88110195 88110195 G A BANP Splice_Site p.X497_splice 0.18 TCGA-S5-A6DX-01 16 88926351 88926351 C G TRAPPC2L Missense_Mutation p.F115L 0.26 deleterious(0) probably_damaging(0.955) TCGA-S5-A6DX-01 16 89348059 89348059 G A ANKRD11 Missense_Mutation p.R1631W 0.32 probably_damaging(0.999) TCGA-S5-A6DX-01 16 89929898 89929898 C A SPIRE2 Silent p.P530P 0.22 TCGA-S5-A6DX-01 17 10299762 10299762 G C MYH8 Missense_Mutation p.S1513C 0.30 tolerated(0.05) possibly_damaging(0.841) TCGA-S5-A6DX-01 17 11840829 11840829 G A DNAH9 Missense_Mutation p.R4217K 0.30 benign(0.062) TCGA-S5-A6DX-01 17 1465862 1465862 C T PITPNA 5'UTR 0.50 TCGA-S5-A6DX-01 17 15532044 15532044 G C TRIM16 Nonsense_Mutation p.S527* 0.33 TCGA-S5-A6DX-01 17 18053751 18053751 G C MYO15A Missense_Mutation p.E2407D 0.41 unknown(0) TCGA-S5-A6DX-01 17 18133326 18133326 C T LLGL1 Silent p.I51I 0.44 TCGA-S5-A6DX-01 17 2089954 2089954 C T SMG6 Intron 0.30 TCGA-S5-A6DX-01 17 27049545 27049545 G C RPL23A Intron 0.28 TCGA-S5-A6DX-01 17 30814690 30814690 G A CDK5R1 Missense_Mutation p.E18K 0.20 deleterious(0.01) possibly_damaging(0.67) TCGA-S5-A6DX-01 17 30814708 30814708 G A CDK5R1 Missense_Mutation p.V24M 0.16 tolerated(0.25) possibly_damaging(0.562) TCGA-S5-A6DX-01 17 30814799 30814799 G C CDK5R1 Missense_Mutation p.R54T 0.14 deleterious(0) probably_damaging(0.998) TCGA-S5-A6DX-01 17 30814827 30814827 G A CDK5R1 Silent p.K63K 0.14 TCGA-S5-A6DX-01 17 30814992 30814992 G A CDK5R1 Silent p.Q118Q 0.14 TCGA-S5-A6DX-01 17 31415926 31415926 C A ASIC2 Silent p.G314G 0.24 TCGA-S5-A6DX-01 17 34851110 34851110 C T ZNHIT3 Silent p.L110L 0.12 TCGA-S5-A6DX-01 17 34913061 34913061 G C GGNBP2 Missense_Mutation p.E105Q 0.19 tolerated(0.18) benign(0.004) TCGA-S5-A6DX-01 17 35300318 35300318 G A LHX1 Missense_Mutation p.E371K 0.34 deleterious(0.02) possibly_damaging(0.509) TCGA-S5-A6DX-01 17 36523815 36523815 G A SOCS7 Silent p.L414L 0.33 TCGA-S5-A6DX-01 17 39340933 39340933 A G KRTAP4-1 Silent p.T58T 0.32 TCGA-S5-A6DX-01 17 39406277 39406277 G A KRTAP9-4 Missense_Mutation p.R102K 0.30 tolerated(0.28) possibly_damaging(0.869) TCGA-S5-A6DX-01 17 39551114 39551114 C G KRT31 Missense_Mutation p.E361D 0.21 tolerated(0.11) benign(0.116) TCGA-S5-A6DX-01 17 41019382 41019382 G C AOC4P RNA 0.27 TCGA-S5-A6DX-01 17 41019486 41019486 G C AOC4P RNA 0.22 TCGA-S5-A6DX-01 17 41132975 41132975 G A RUNDC1 Missense_Mutation p.D128N 0.30 tolerated(0.05) benign(0.025) TCGA-S5-A6DX-01 17 41569645 41569645 G C DHX8 Missense_Mutation p.R163T 0.20 tolerated(0.48) unknown(0) TCGA-S5-A6DX-01 17 41606503 41606503 C T ETV4 Silent p.K410K 0.30 TCGA-S5-A6DX-01 17 42478201 42478201 C G GPATCH8 Missense_Mutation p.R415T 0.27 deleterious(0.01) possibly_damaging(0.791) TCGA-S5-A6DX-01 17 42636667 42636667 C G FZD2 Missense_Mutation p.F537L 0.20 tolerated(0.09) possibly_damaging(0.474) TCGA-S5-A6DX-01 17 43037637 43037637 G C C1QL1 Missense_Mutation p.I232M 0.33 deleterious(0) probably_damaging(0.986) TCGA-S5-A6DX-01 17 43552876 43552876 G C PLEKHM1 Silent p.L171L 0.26 TCGA-S5-A6DX-01 17 45787908 45787908 C A TBKBP1 Silent p.L588L 0.31 TCGA-S5-A6DX-01 17 46675241 46675241 G A HOXB6 Missense_Mutation p.S91F 0.24 deleterious(0) benign(0.004) TCGA-S5-A6DX-01 17 48452913 48452913 C G EME1 Missense_Mutation p.S115C 0.28 deleterious(0) probably_damaging(0.978) TCGA-S5-A6DX-01 17 48543113 48543113 G A CHAD Missense_Mutation p.T298I 0.25 tolerated(0.07) benign(0.055) TCGA-S5-A6DX-01 17 48603375 48603375 C G MYCBPAP Missense_Mutation p.S682C 0.30 deleterious(0.03) benign(0.022) TCGA-S5-A6DX-01 17 5462750 5462750 C T NLRP1 Silent p.P422P 0.32 TCGA-S5-A6DX-01 17 56679300 56679300 C G TEX14 Missense_Mutation p.Q521H 0.34 deleterious(0.02) probably_damaging(0.99) TCGA-S5-A6DX-01 17 58372085 58372085 C G USP32 Missense_Mutation p.D124H 0.21 deleterious(0) possibly_damaging(0.498) TCGA-S5-A6DX-01 17 58469240 58469240 C T USP32 Intron 0.23 TCGA-S5-A6DX-01 17 58678170 58678170 C T PPM1D Missense_Mutation p.S132L 0.18 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 17 59480559 59480559 G C TBX2 Missense_Mutation p.Q267H 0.29 deleterious(0) probably_damaging(0.99) TCGA-S5-A6DX-01 17 59481830 59481830 G A TBX2 Missense_Mutation p.D287N 0.28 deleterious(0.03) probably_damaging(0.915) TCGA-S5-A6DX-01 17 60743624 60743624 C T MRC2 Silent p.I230I 0.31 TCGA-S5-A6DX-01 17 62893334 62893334 G A LRRC37A3 Silent p.S14S 0.11 TCGA-S5-A6DX-01 17 64738854 64738854 G A PRKCA Silent p.G500G 0.24 TCGA-S5-A6DX-01 17 65734347 65734347 C T NOL11 Nonsense_Mutation p.Q547* 0.26 TCGA-S5-A6DX-01 17 7121592 7121592 C A DLG4 Missense_Mutation p.D43Y 0.45 deleterious(0) benign(0.1) TCGA-S5-A6DX-01 17 71282142 71282142 C A CDC42EP4 Silent p.R166R 0.26 TCGA-S5-A6DX-01 17 73840377 73840377 G A UNC13D Silent p.F14F 0.35 TCGA-S5-A6DX-01 17 74740478 74740478 C T MFSD11 Missense_Mutation p.R191W 0.37 deleterious(0) probably_damaging(0.981) TCGA-S5-A6DX-01 17 7507157 7507157 G A FXR2 Missense_Mutation p.R123W 0.42 deleterious(0.02) probably_damaging(0.963) TCGA-S5-A6DX-01 17 76988806 76988806 C T CANT1 3'UTR 0.33 TCGA-S5-A6DX-01 17 79031743 79031743 G C BAIAP2 Missense_Mutation p.E65Q 0.15 tolerated(0.2) probably_damaging(0.961) TCGA-S5-A6DX-01 17 79419758 79419758 G A RP11-1055B8.7 Silent p.E1442E 0.18 TCGA-S5-A6DX-01 17 80540641 80540641 C G FOXK2 Missense_Mutation p.L312V 0.19 deleterious(0.02) possibly_damaging(0.687) TCGA-S5-A6DX-01 17 80541961 80541961 C T FOXK2 Silent p.S392S 0.17 TCGA-S5-A6DX-01 18 11886744 11886744 G A MPPE1 Silent p.L238L 0.49 TCGA-S5-A6DX-01 18 21110004 21110004 G A C18orf8 Missense_Mutation p.E503K 0.15 tolerated(0.16) probably_damaging(0.936) TCGA-S5-A6DX-01 18 21114524 21114524 C G NPC1 Splice_Site p.X1160_splice 0.17 TCGA-S5-A6DX-01 18 211255 211255 G A USP14 Missense_Mutation p.E486K 0.31 tolerated(0.09) benign(0.099) TCGA-S5-A6DX-01 18 22057539 22057539 C A HRH4 3'UTR 0.12 TCGA-S5-A6DX-01 18 2732262 2732262 G A SMCHD1 Splice_Site p.X1017_splice 0.30 TCGA-S5-A6DX-01 18 34273302 34273302 C T FHOD3 Silent p.L543L 0.12 TCGA-S5-A6DX-01 18 39644703 39644703 G A PIK3C3 Splice_Site p.X811_splice 0.21 TCGA-S5-A6DX-01 18 40851755 40851755 G T SYT4 Missense_Mutation p.Q298K 0.14 deleterious(0) possibly_damaging(0.474) TCGA-S5-A6DX-01 18 43445682 43445682 G C EPG5 Missense_Mutation p.Q2222E 0.17 deleterious(0.01) benign(0.015) TCGA-S5-A6DX-01 18 47008720 47008720 C T C18orf32 Missense_Mutation p.D76N 0.29 deleterious(0.03) benign(0.059) TCGA-S5-A6DX-01 18 55329750 55329750 C T ATP8B1 Missense_Mutation p.G795R 0.40 tolerated(0.23) benign(0.007) TCGA-S5-A6DX-01 18 55329809 55329809 C G ATP8B1 Missense_Mutation p.R775T 0.32 tolerated(0.25) benign(0.004) TCGA-S5-A6DX-01 18 55862910 55862910 G C NEDD4L Intron 0.35 TCGA-S5-A6DX-01 18 60232244 60232244 T G ZCCHC2 Missense_Mutation p.I587M 0.14 tolerated(0.14) benign(0.008) TCGA-S5-A6DX-01 18 7117656 7117656 C A LAMA1 Intron 0.38 TCGA-S5-A6DX-01 18 74091081 74091081 G C ZNF516 Missense_Mutation p.L997V 0.11 tolerated(0.53) benign(0.184) TCGA-S5-A6DX-01 18 74592201 74592201 G C ZNF236 Missense_Mutation p.E371Q 0.21 tolerated(0.1) possibly_damaging(0.501) TCGA-S5-A6DX-01 19 11624667 11624667 G A ECSIT Missense_Mutation p.R156W 0.17 deleterious(0) probably_damaging(0.994) TCGA-S5-A6DX-01 19 12090753 12090753 C T ZNF763 3'UTR 0.23 TCGA-S5-A6DX-01 19 1388564 1388564 C A NDUFS7 Missense_Mutation p.Q32K 0.25 tolerated_low_confidence(0.32) benign(0.02) TCGA-S5-A6DX-01 19 1388836 1388836 C T NDUFS7 Nonsense_Mutation p.Q43* 0.45 TCGA-S5-A6DX-01 19 1615465 1615465 C G TCF3 Missense_Mutation p.E547D 0.21 tolerated(0.11) benign(0.006) TCGA-S5-A6DX-01 19 17327045 17327045 G A USE1 Missense_Mutation p.R100K 0.28 tolerated(1) benign(0.002) TCGA-S5-A6DX-01 19 17837079 17837079 G A MAP1S Missense_Mutation p.D296N 0.18 deleterious(0) probably_damaging(0.996) TCGA-S5-A6DX-01 19 22363473 22363473 G T ZNF676 Missense_Mutation p.S349Y 0.22 tolerated(0.25) benign(0.03) TCGA-S5-A6DX-01 19 23837401 23837401 G A ZNF675 Nonsense_Mutation p.Q112* 0.28 TCGA-S5-A6DX-01 19 24310504 24310504 C T ZNF254 Missense_Mutation p.H568Y 0.21 deleterious(0.04) possibly_damaging(0.796) TCGA-S5-A6DX-01 19 3179456 3179456 C G S1PR4 Silent p.L222L 0.24 TCGA-S5-A6DX-01 19 35655093 35655093 G C FXYD5 Missense_Mutation p.E109D 0.23 tolerated(0.07) benign(0.066) TCGA-S5-A6DX-01 19 36278139 36278139 C T ARHGAP33 Missense_Mutation p.P730L 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-S5-A6DX-01 19 38573136 38573136 G A SIPA1L3 Missense_Mutation p.E311K 0.22 deleterious(0) benign(0.125) TCGA-S5-A6DX-01 19 39218589 39218589 C T ACTN4 Missense_Mutation p.H781Y 0.25 deleterious(0.01) benign(0.209) TCGA-S5-A6DX-01 19 39913514 39913514 G A PLEKHG2 Missense_Mutation p.R607Q 0.31 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-S5-A6DX-01 19 39965243 39965243 C T SUPT5H Missense_Mutation p.S970L 0.37 tolerated(0.3) benign(0.015) TCGA-S5-A6DX-01 19 43234064 43234064 C G PSG3 Missense_Mutation p.R285T 0.21 tolerated(0.09) possibly_damaging(0.555) TCGA-S5-A6DX-01 19 43258512 43258512 A G PSG8 Missense_Mutation p.S406P 0.16 tolerated(0.06) probably_damaging(0.974) TCGA-S5-A6DX-01 19 44096790 44096790 C T IRGQ Silent p.T420T 0.04 TCGA-S5-A6DX-01 19 45422494 45422494 G A APOC1 3'UTR 0.29 TCGA-S5-A6DX-01 19 46347444 46347444 C T SYMPK Missense_Mutation p.E231K 0.27 deleterious(0.04) benign(0.077) TCGA-S5-A6DX-01 19 4859608 4859608 C A PLIN3 Silent p.T114T 0.16 TCGA-S5-A6DX-01 19 48863423 48863423 G C TMEM143 Missense_Mutation p.S92W 0.20 tolerated(0.06) unknown(0) TCGA-S5-A6DX-01 19 48956192 48956192 G A GRWD1 Silent p.L417L 0.33 TCGA-S5-A6DX-01 19 49348654 49348654 G C PLEKHA4 Missense_Mutation p.H572Q 0.34 tolerated(0.47) benign(0.001) TCGA-S5-A6DX-01 19 49391498 49391498 C T TULP2 Silent p.K219K 0.26 TCGA-S5-A6DX-01 19 49621770 49621770 G A C19orf73 3'UTR 0.23 TCGA-S5-A6DX-01 19 49868778 49868778 C T DKKL1 Missense_Mutation p.R66W 0.32 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-S5-A6DX-01 19 50191611 50191611 G C PRMT1 3'UTR 0.31 TCGA-S5-A6DX-01 19 51169635 51169635 G A SHANK1 Missense_Mutation p.S1861L 0.20 unknown(0) TCGA-S5-A6DX-01 19 51919205 51919205 C A SIGLEC10 Missense_Mutation p.R324L 0.26 tolerated(0.11) benign(0.344) TCGA-S5-A6DX-01 19 52538633 52538633 C T ZNF432 Missense_Mutation p.S100N 0.22 tolerated(0.33) benign(0.001) TCGA-S5-A6DX-01 19 53304949 53304949 G C ZNF28 Missense_Mutation p.S50C 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-S5-A6DX-01 19 53573081 53573081 G C ZNF160 Missense_Mutation p.H236D 0.30 tolerated(0.14) benign(0.001) TCGA-S5-A6DX-01 19 53644455 53644455 C A ZNF347 Missense_Mutation p.M543I 0.30 deleterious(0) benign(0.001) TCGA-S5-A6DX-01 19 53747051 53747051 C G ZNF677 Missense_Mutation p.E39Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-S5-A6DX-01 19 54650346 54650346 G C CNOT3 Missense_Mutation p.E283Q 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-S5-A6DX-01 19 54721249 54721249 G C LILRB3 Missense_Mutation p.S564C 0.35 deleterious(0) probably_damaging(0.987) TCGA-S5-A6DX-01 19 55021782 55021782 G A LAIR2 3'UTR 0.19 TCGA-S5-A6DX-01 19 55179353 55179353 G A LILRB4 Silent p.V410V 0.29 TCGA-S5-A6DX-01 19 55329821 55329821 G C KIR3DL1 Missense_Mutation p.R41P 0.30 tolerated(0.27) benign(0.004) TCGA-S5-A6DX-01 19 55964744 55964744 G A ISOC2 Silent p.L199L 0.22 TCGA-S5-A6DX-01 19 56701534 56701534 G A ZSCAN5B Nonsense_Mutation p.Q384* 0.27 TCGA-S5-A6DX-01 19 56701697 56701697 G C ZSCAN5B Missense_Mutation p.I329M 0.23 tolerated(0.14) benign(0.019) TCGA-S5-A6DX-01 19 57839215 57839215 G C ZNF543 Missense_Mutation p.E129Q 0.28 deleterious(0.04) benign(0.077) TCGA-S5-A6DX-01 19 57839287 57839287 G A ZNF543 Missense_Mutation p.E153K 0.21 tolerated(0.48) benign(0.013) TCGA-S5-A6DX-01 19 58639157 58639157 C T ZNF329 3'UTR 0.19 TCGA-S5-A6DX-01 19 58762802 58762802 G C ZNF544 Intron 0.16 TCGA-S5-A6DX-01 19 7593586 7593586 G A MCOLN1 Silent p.Q327Q 0.28 TCGA-S5-A6DX-01 19 7696582 7696582 G A PCP2 Missense_Mutation p.A135V 0.34 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-S5-A6DX-01 19 8206968 8206968 G A FBN3 Nonsense_Mutation p.Q199* 0.20 TCGA-S5-A6DX-01 19 8455381 8455381 G A RAB11B Intron 0.31 TCGA-S5-A6DX-01 19 9063249 9063249 G C MUC16 Missense_Mutation p.S8066C 0.22 unknown(0) TCGA-S5-A6DX-01 19 9063820 9063820 G C MUC16 Missense_Mutation p.Q7876E 0.22 unknown(0) TCGA-S5-A6DX-01 19 9064031 9064031 A T MUC16 Missense_Mutation p.D7805E 0.30 unknown(0) TCGA-S5-A6DX-01 19 9071011 9071011 T C MUC16 Missense_Mutation p.T5479A 0.26 unknown(0) TCGA-S5-A6DX-01 19 9964875 9964875 G A OLFM2 Missense_Mutation p.S451F 0.26 tolerated_low_confidence(0.06) benign(0.125) TCGA-S5-A6DX-01 1 101705633 101705633 G A S1PR1 Missense_Mutation p.E365K 0.09 tolerated(0.24) benign(0.001) TCGA-S5-A6DX-01 1 10479570 10479570 G C PGD Missense_Mutation p.E436Q 0.26 tolerated(0.07) benign(0.013) TCGA-S5-A6DX-01 1 107599529 107599529 C T PRMT6 Silent p.R64R 0.25 TCGA-S5-A6DX-01 1 110944149 110944149 G C LAMTOR5 Missense_Mutation p.S173C 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-S5-A6DX-01 1 117509836 117509836 C G PTGFRN Nonsense_Mutation p.S648* 0.24 TCGA-S5-A6DX-01 1 1249154 1249154 G C CPSF3L Missense_Mutation p.I311M 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-S5-A6DX-01 1 1263143 1263143 G C GLTPD1 Nonstop_Mutation p.*215Yext*44 0.25 TCGA-S5-A6DX-01 1 12836109 12836109 C G PRAMEF12 Silent p.L237L 0.32 TCGA-S5-A6DX-01 1 12836179 12836179 C G PRAMEF12 Missense_Mutation p.Q261E 0.32 deleterious(0.01) benign(0.025) TCGA-S5-A6DX-01 1 12836222 12836222 C G PRAMEF12 Missense_Mutation p.S275C 0.32 tolerated(0.05) probably_damaging(0.987) TCGA-S5-A6DX-01 1 145440909 145440909 C G TXNIP Silent p.P332P 0.14 TCGA-S5-A6DX-01 1 145560915 145560915 C T ANKRD35 Missense_Mutation p.L258F 0.15 tolerated(0.71) benign(0.02) TCGA-S5-A6DX-01 1 145578392 145578392 C G PIAS3 Missense_Mutation p.L119V 0.17 tolerated(0.22) benign(0.101) TCGA-S5-A6DX-01 1 147410906 147410906 G C GPR89B Missense_Mutation p.E61Q 0.14 deleterious(0) probably_damaging(0.977) TCGA-S5-A6DX-01 1 152060593 152060593 G C TCHHL1 Silent p.L9L 0.13 TCGA-S5-A6DX-01 1 152188433 152188433 G C HRNR Nonsense_Mutation p.S1891* 0.02 TCGA-S5-A6DX-01 1 152190991 152190991 G A HRNR Silent p.G1038G 0.32 TCGA-S5-A6DX-01 1 152278649 152278649 C T FLG Missense_Mutation p.E2905K 0.19 benign(0.007) TCGA-S5-A6DX-01 1 152328376 152328376 G A FLG2 Missense_Mutation p.S629F 0.17 unknown(0) TCGA-S5-A6DX-01 1 152777684 152777684 G A LCE1C Nonsense_Mutation p.Q91* 0.34 TCGA-S5-A6DX-01 1 152777972 152777972 G C LCE1C Intron 0.18 TCGA-S5-A6DX-01 1 153520015 153520015 C G S100A3 3'UTR 0.36 TCGA-S5-A6DX-01 1 154245112 154245112 C A HAX1 5'UTR 0.32 TCGA-S5-A6DX-01 1 154956531 154956531 G T FLAD1 Nonsense_Mutation p.E121* 0.15 TCGA-S5-A6DX-01 1 155018613 155018613 C G DCST1 Missense_Mutation p.L429V 0.16 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 1 155340689 155340689 G A ASH1L Nonsense_Mutation p.Q2140* 0.12 TCGA-S5-A6DX-01 1 155429606 155429606 C T ASH1L Missense_Mutation p.E1690K 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-S5-A6DX-01 1 155450328 155450328 C T ASH1L Missense_Mutation p.R778Q 0.17 tolerated_low_confidence(0.84) benign(0.005) TCGA-S5-A6DX-01 1 155582217 155582217 G A MSTO1 Silent p.Q274Q 0.16 TCGA-S5-A6DX-01 1 156642904 156642904 G T NES Missense_Mutation p.P359H 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-S5-A6DX-01 1 156714873 156714873 T - HDGF Frame_Shift_Del p.N93Tfs*78 0.28 TCGA-S5-A6DX-01 1 157669491 157669491 C T FCRL3 Missense_Mutation p.E15K 0.19 tolerated(0.24) benign(0.271) TCGA-S5-A6DX-01 1 158390576 158390576 G C OR10K2 Silent p.L27L 0.17 TCGA-S5-A6DX-01 1 158615321 158615321 G T SPTA1 Missense_Mutation p.D1320E 0.25 deleterious(0) probably_damaging(0.94) TCGA-S5-A6DX-01 1 159778984 159778984 G A FCRL6 Missense_Mutation p.E185K 0.28 tolerated(0.09) possibly_damaging(0.647) TCGA-S5-A6DX-01 1 160326404 160326404 C T NCSTN Nonsense_Mutation p.Q552* 0.33 TCGA-S5-A6DX-01 1 160327971 160327971 C T NCSTN Silent p.L680L 0.27 TCGA-S5-A6DX-01 1 161192715 161192715 C T APOA2 Missense_Mutation p.E60K 0.15 deleterious(0.01) benign(0.006) TCGA-S5-A6DX-01 1 166987083 166987083 C G MAEL Missense_Mutation p.L310V 0.30 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 1 169761964 169761964 G A METTL18 Silent p.L291L 0.09 TCGA-S5-A6DX-01 1 173836849 173836849 G C ZBTB37 5'Flank 0.31 TCGA-S5-A6DX-01 1 19474600 19474600 G C UBR4 Missense_Mutation p.Q2506E 0.32 benign(0.017) TCGA-S5-A6DX-01 1 196953098 196953098 T C CFHR5 Silent p.C87C 0.15 TCGA-S5-A6DX-01 1 197026437 197026437 T C F13B Missense_Mutation p.T322A 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-S5-A6DX-01 1 200818298 200818298 C T CAMSAP2 Silent p.L801L 0.17 TCGA-S5-A6DX-01 1 201788964 201788964 G C NAV1 Splice_Site p.X1847_splice 0.11 TCGA-S5-A6DX-01 1 203690505 203690505 C G ATP2B4 Missense_Mutation p.Q927E 0.19 deleterious(0) probably_damaging(0.992) TCGA-S5-A6DX-01 1 204106259 204106259 G C ETNK2 Silent p.L329L 0.18 TCGA-S5-A6DX-01 1 204402481 204402481 G A PIK3C2B Nonsense_Mutation p.Q1306* 0.20 TCGA-S5-A6DX-01 1 204403730 204403730 C T PIK3C2B Missense_Mutation p.E1175K 0.20 deleterious(0.03) benign(0.093) TCGA-S5-A6DX-01 1 204587020 204587020 C T LRRN2 Missense_Mutation p.E701K 0.18 deleterious_low_confidence(0.04) benign(0.016) TCGA-S5-A6DX-01 1 205277762 205277762 C T NUAK2 Missense_Mutation p.E151K 0.12 deleterious(0) possibly_damaging(0.711) TCGA-S5-A6DX-01 1 205801758 205801758 G A PM20D1 Missense_Mutation p.S418F 0.28 deleterious(0.01) probably_damaging(0.91) TCGA-S5-A6DX-01 1 206765061 206765061 G A EIF2D 3'UTR 0.16 TCGA-S5-A6DX-01 1 207039275 207039275 G C IL20 Missense_Mutation p.K26N 0.15 deleterious(0) possibly_damaging(0.88) TCGA-S5-A6DX-01 1 21036238 21036238 G C KIF17 Missense_Mutation p.I188M 0.11 deleterious(0) benign(0.3) TCGA-S5-A6DX-01 1 21137292 21137292 C T EIF4G3 Silent p.E1511E 0.17 TCGA-S5-A6DX-01 1 22041888 22041888 G A USP48 Missense_Mutation p.P653S 0.17 tolerated(0.64) benign(0.009) TCGA-S5-A6DX-01 1 22416522 22416522 C T CDC42 Intron 0.34 TCGA-S5-A6DX-01 1 227922981 227922981 C G JMJD4 Silent p.L44L 0.17 TCGA-S5-A6DX-01 1 228471339 228471339 C T OBSCN Missense_Mutation p.S3387L 0.24 possibly_damaging(0.699) TCGA-S5-A6DX-01 1 228645351 228645351 G A HIST3H2A Silent p.L56L 0.31 TCGA-S5-A6DX-01 1 229773910 229773910 C G URB2 Missense_Mutation p.L1184V 0.23 tolerated(1) benign(0.028) TCGA-S5-A6DX-01 1 230903402 230903402 G C CAPN9 Missense_Mutation p.E218Q 0.20 tolerated(1) benign(0.009) TCGA-S5-A6DX-01 1 23419377 23419377 A G LUZP1 Missense_Mutation p.S460P 0.17 tolerated(0.27) benign(0.007) TCGA-S5-A6DX-01 1 235915462 235915462 C T LYST Missense_Mutation p.M2490I 0.21 tolerated(0.22) benign(0.001) TCGA-S5-A6DX-01 1 241663874 241663874 T A FH Missense_Mutation p.H418L 0.08 deleterious(0.01) benign(0.032) TCGA-S5-A6DX-01 1 244587259 244587259 C G ADSS Missense_Mutation p.E193Q 0.23 tolerated(0.44) benign(0.004) TCGA-S5-A6DX-01 1 248551674 248551674 C A OR2T6 Silent p.A255A 0.17 TCGA-S5-A6DX-01 1 248845594 248845594 G C OR14I1 Silent p.L4L 0.24 TCGA-S5-A6DX-01 1 25717357 25717357 C A RHCE Silent p.L228L 0.42 TCGA-S5-A6DX-01 1 26595968 26595968 G A CEP85 Silent p.L504L 0.32 TCGA-S5-A6DX-01 1 33236480 33236480 C - KIAA1522 Frame_Shift_Del p.R568Gfs*84 0.26 TCGA-S5-A6DX-01 1 33236804 33236804 C G KIAA1522 Missense_Mutation p.S675C 0.08 deleterious(0.03) unknown(0) TCGA-S5-A6DX-01 1 33236893 33236893 C A KIAA1522 Missense_Mutation p.Q705K 0.05 tolerated_low_confidence(0.34) unknown(0) TCGA-S5-A6DX-01 1 35227098 35227098 C T GJB4 Silent p.L81L 0.16 TCGA-S5-A6DX-01 1 38272651 38272651 G A YRDC Intron 0.27 TCGA-S5-A6DX-01 1 40228859 40228859 G A BMP8B Missense_Mutation p.P322S 0.34 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 1 41978917 41978917 G A HIVEP3 Missense_Mutation p.S1992L 0.30 benign(0.002) TCGA-S5-A6DX-01 1 41979191 41979191 G A HIVEP3 Nonsense_Mutation p.Q1901* 0.20 TCGA-S5-A6DX-01 1 42914297 42914297 C G ZMYND12 Missense_Mutation p.E89Q 0.16 tolerated(0.06) benign(0.156) TCGA-S5-A6DX-01 1 42922314 42922314 C T PPCS Silent p.F26F 0.31 TCGA-S5-A6DX-01 1 43814957 43814957 C G MPL Missense_Mutation p.L498V 0.12 tolerated(0.49) benign(0.123) TCGA-S5-A6DX-01 1 46655654 46655654 C T POMGNT1 Missense_Mutation p.E553K 0.30 benign(0.015) TCGA-S5-A6DX-01 1 46977889 46977889 C T DMBX1 Missense_Mutation p.P286L 0.18 deleterious_low_confidence(0) benign(0.328) TCGA-S5-A6DX-01 1 4772474 4772474 G A AJAP1 Missense_Mutation p.A182T 0.42 tolerated(0.3) probably_damaging(0.953) TCGA-S5-A6DX-01 1 52269554 52269554 C T NRD1 Missense_Mutation p.E817K 0.19 tolerated(0.06) benign(0.313) TCGA-S5-A6DX-01 1 54606979 54606979 C T CDCP2 Silent p.L185L 0.32 TCGA-S5-A6DX-01 1 63284712 63284712 C G ATG4C Nonsense_Mutation p.S144* 0.14 TCGA-S5-A6DX-01 1 65871611 65871611 G A DNAJC6 Silent p.P762P 0.39 TCGA-S5-A6DX-01 1 6641236 6641236 C T ZBTB48 Silent p.L189L 0.30 TCGA-S5-A6DX-01 1 67147901 67147901 C T SGIP1 Silent p.F388F 0.26 TCGA-S5-A6DX-01 1 71318535 71318535 A T PTGER3 Missense_Mutation p.F371Y 0.30 deleterious(0.02) benign(0.001) TCGA-S5-A6DX-01 1 75038409 75038409 G A C1orf173 Silent p.S995S 0.29 TCGA-S5-A6DX-01 1 91403405 91403405 G C ZNF644 Missense_Mutation p.Q1109E 0.19 deleterious(0.03) probably_damaging(0.977) TCGA-S5-A6DX-01 1 91980413 91980413 G A CDC7 Missense_Mutation p.R319K 0.14 tolerated(0.09) possibly_damaging(0.611) TCGA-S5-A6DX-01 1 93659279 93659279 G A CCDC18 Missense_Mutation p.E280K 0.24 deleterious(0) possibly_damaging(0.782) TCGA-S5-A6DX-01 1 9415906 9415906 G A SPSB1 5'UTR 0.30 TCGA-S5-A6DX-01 1 9415919 9415919 G C SPSB1 5'UTR 0.32 TCGA-S5-A6DX-01 1 94502336 94502336 C T ABCA4 Silent p.L1274L 0.16 TCGA-S5-A6DX-01 1 9815234 9815234 G A CLSTN1 Silent p.F126F 0.25 TCGA-S5-A6DX-01 20 30193193 30193193 G T ID1 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) unknown(0) TCGA-S5-A6DX-01 20 3214775 3214775 G C SLC4A11 Silent p.L202L 0.31 TCGA-S5-A6DX-01 20 37357120 37357120 G A SLC32A1 Silent p.L472L 0.38 TCGA-S5-A6DX-01 20 43379267 43379267 C T KCNK15 Missense_Mutation p.P261S 0.30 tolerated(0.44) benign(0.048) TCGA-S5-A6DX-01 20 44664463 44664463 G T SLC12A5 Missense_Mutation p.Q132H 0.31 deleterious(0) benign(0.119) TCGA-S5-A6DX-01 20 46281677 46281677 C G NCOA3 Missense_Mutation p.S1375C 0.12 deleterious(0.04) possibly_damaging(0.779) TCGA-S5-A6DX-01 20 46281814 46281814 C T NCOA3 Nonsense_Mutation p.Q1421* 0.25 TCGA-S5-A6DX-01 20 47558438 47558438 G C ARFGEF2 Missense_Mutation p.E64Q 0.25 tolerated(0.12) benign(0.105) TCGA-S5-A6DX-01 20 47592659 47592659 G A ARFGEF2 Silent p.Q627Q 0.23 TCGA-S5-A6DX-01 20 55982650 55982650 G A RBM38 Silent p.V156V 0.32 TCGA-S5-A6DX-01 20 55982881 55982881 G A RBM38 Silent p.L233L 0.27 TCGA-S5-A6DX-01 20 58443546 58443546 C T SYCP2 Missense_Mutation p.E1304K 0.21 tolerated(0.47) benign(0.017) TCGA-S5-A6DX-01 20 61428024 61428024 G A MRGBP Splice_Site p.X50_splice 0.90 TCGA-S5-A6DX-01 20 7963176 7963176 C G TMX4 Missense_Mutation p.D258H 0.32 deleterious(0.01) probably_damaging(0.963) TCGA-S5-A6DX-01 21 22370807 22370807 G A NCAM2 5'UTR 0.27 TCGA-S5-A6DX-01 21 33974618 33974618 C G AP000275.65 Intron 0.05 TCGA-S5-A6DX-01 21 34004020 34004020 G C SYNJ1 Nonsense_Mutation p.S1375* 0.10 TCGA-S5-A6DX-01 21 34166715 34166715 C T C21orf62 Silent p.R6R 0.15 TCGA-S5-A6DX-01 21 37507667 37507667 C A CBR3 Missense_Mutation p.F59L 0.34 deleterious(0.03) benign(0.233) TCGA-S5-A6DX-01 21 37600118 37600118 C T DOPEY2 Silent p.L536L 0.12 TCGA-S5-A6DX-01 21 38884262 38884262 C G DYRK1A Missense_Mutation p.P574A 0.37 deleterious_low_confidence(0.01) benign(0.016) TCGA-S5-A6DX-01 21 41668001 41668001 G T DSCAM Silent p.I721I 0.19 TCGA-S5-A6DX-01 21 46011731 46011731 G C KRTAP10-6 Missense_Mutation p.S212C 0.31 deleterious(0) unknown(0) TCGA-S5-A6DX-01 22 17589721 17589721 G A IL17RA Missense_Mutation p.D538N 0.52 deleterious(0.03) probably_damaging(0.989) TCGA-S5-A6DX-01 22 17978524 17978524 G A CECR2 Missense_Mutation p.R122Q 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-S5-A6DX-01 22 18027939 18027939 G A CECR2 Missense_Mutation p.D967N 0.19 tolerated_low_confidence(0.18) benign(0.014) TCGA-S5-A6DX-01 22 18028152 18028152 G A CECR2 Missense_Mutation p.G1038R 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.452) TCGA-S5-A6DX-01 22 19130297 19130297 C G DGCR14 Missense_Mutation p.Q82H 0.30 deleterious(0) probably_damaging(0.915) TCGA-S5-A6DX-01 22 20130670 20130670 C G ZDHHC8 Nonsense_Mutation p.S506* 0.27 TCGA-S5-A6DX-01 22 20781775 20781775 C G SCARF2 Missense_Mutation p.E540Q 0.21 tolerated(0.1) probably_damaging(0.92) TCGA-S5-A6DX-01 22 20785503 20785503 G T SCARF2 Nonsense_Mutation p.S219* 0.28 TCGA-S5-A6DX-01 22 21799508 21799508 C T HIC2 Silent p.S108S 0.15 TCGA-S5-A6DX-01 22 24376926 24376926 C T GSTT1 Missense_Mutation p.V142M 0.26 tolerated(0.12) benign(0.013) TCGA-S5-A6DX-01 22 24953631 24953631 C T SNRPD3 5'UTR 0.26 TCGA-S5-A6DX-01 22 32010807 32010807 G A SFI1 Missense_Mutation p.R1010Q 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-S5-A6DX-01 22 32487656 32487656 C A SLC5A1 Missense_Mutation p.S396Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 22 37425360 37425360 C T MPST Silent p.F253F 0.23 TCGA-S5-A6DX-01 22 37602836 37602836 C T SSTR3 Missense_Mutation p.R336H 0.36 tolerated(0.08) benign(0.006) TCGA-S5-A6DX-01 22 38136997 38136997 C G TRIOBP Missense_Mutation p.F1760L 0.40 tolerated_low_confidence(0.06) benign(0.007) TCGA-S5-A6DX-01 22 39239431 39239431 G A NPTXR Missense_Mutation p.R145C 0.23 deleterious(0.02) possibly_damaging(0.764) TCGA-S5-A6DX-01 22 40742593 40742593 G C ADSL Missense_Mutation p.D11H 0.21 deleterious(0) benign(0.045) TCGA-S5-A6DX-01 22 43026976 43026976 G A CYB5R3 Missense_Mutation p.S115L 0.27 tolerated(0.24) possibly_damaging(0.877) TCGA-S5-A6DX-01 22 44107479 44107479 C T EFCAB6 Missense_Mutation p.E303K 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-S5-A6DX-01 22 46708049 46708049 G C GTSE1 Missense_Mutation p.E258D 0.25 tolerated(0.1) benign(0.146) TCGA-S5-A6DX-01 22 46739199 46739199 C G TRMU Missense_Mutation p.P97A 0.17 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 22 50617584 50617584 G T PANX2 Nonsense_Mutation p.E638* 0.23 TCGA-S5-A6DX-01 22 50968139 50968139 C T TYMP 5'UTR 0.28 TCGA-S5-A6DX-01 22 51143466 51143466 C T SHANK3 Silent p.L673L 0.39 TCGA-S5-A6DX-01 2 100210010 100210010 C G AFF3 Missense_Mutation p.D730H 0.17 deleterious(0.02) benign(0.426) TCGA-S5-A6DX-01 2 101898448 101898448 C G RNF149 Missense_Mutation p.L344F 0.26 tolerated(0.12) benign(0.02) TCGA-S5-A6DX-01 2 102641127 102641127 G A IL1R2 Missense_Mutation p.R295H 0.14 tolerated(0.16) benign(0.033) TCGA-S5-A6DX-01 2 10560022 10560022 G A HPCAL1 Missense_Mutation p.E47K 0.25 tolerated(0.08) possibly_damaging(0.728) TCGA-S5-A6DX-01 2 105665629 105665629 A C MRPS9 Missense_Mutation p.I46L 0.13 tolerated_low_confidence(0.37) benign(0.001) TCGA-S5-A6DX-01 2 106015366 106015366 G A FHL2 5'UTR 0.36 TCGA-S5-A6DX-01 2 106717376 106717376 C T UXS1 Intron 0.38 TCGA-S5-A6DX-01 2 106717458 106717458 C T UXS1 Intron 0.27 TCGA-S5-A6DX-01 2 119604365 119604365 G A EN1 Silent p.L127L 0.07 TCGA-S5-A6DX-01 2 120124586 120124586 C G DBI 5'Flank 0.45 TCGA-S5-A6DX-01 2 128380936 128380936 G A MYO7B Missense_Mutation p.A1243T 0.23 tolerated(0.15) benign(0.021) TCGA-S5-A6DX-01 2 131785559 131785559 G A ARHGEF4 Missense_Mutation p.E157K 0.38 deleterious(0.01) benign(0.439) TCGA-S5-A6DX-01 2 135756417 135756417 C T MAP3K19 Silent p.V155V 0.37 TCGA-S5-A6DX-01 2 136622646 136622646 C G MCM6 Missense_Mutation p.E339Q 0.28 tolerated(0.22) benign(0.199) TCGA-S5-A6DX-01 2 14774946 14774946 C G FAM84A Silent p.L281L 0.36 TCGA-S5-A6DX-01 2 152506791 152506791 C T NEB Missense_Mutation p.E2444K 0.31 possibly_damaging(0.869) TCGA-S5-A6DX-01 2 160994698 160994698 C T ITGB6 Missense_Mutation p.E374K 0.20 tolerated(1) probably_damaging(1) TCGA-S5-A6DX-01 2 160994710 160994710 C T ITGB6 Missense_Mutation p.E370K 0.18 tolerated(1) possibly_damaging(0.889) TCGA-S5-A6DX-01 2 166245490 166245490 A G SCN2A Missense_Mutation p.N1725S 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-S5-A6DX-01 2 169718467 169718467 C T NOSTRIN Intron 0.33 TCGA-S5-A6DX-01 2 17696643 17696643 C T RAD51AP2 Missense_Mutation p.E1014K 0.28 tolerated(1) benign(0.005) TCGA-S5-A6DX-01 2 179579884 179579884 A T TTN Missense_Mutation p.Y8677N 0.31 TCGA-S5-A6DX-01 2 190531412 190531412 C G ASNSD1 Missense_Mutation p.S185C 0.11 deleterious(0.01) possibly_damaging(0.76) TCGA-S5-A6DX-01 2 197593988 197593988 G T CCDC150 Missense_Mutation p.Q876H 0.15 tolerated(0.12) probably_damaging(0.984) TCGA-S5-A6DX-01 2 197594004 197594004 G C CCDC150 Missense_Mutation p.E882Q 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-S5-A6DX-01 2 198324696 198324696 C G COQ10B Missense_Mutation p.P49A 0.16 tolerated(0.12) benign(0.001) TCGA-S5-A6DX-01 2 203806611 203806611 G A CARF 5'UTR 0.46 TCGA-S5-A6DX-01 2 208633144 208633144 G A FZD5 Missense_Mutation p.S107L 0.44 deleterious(0) probably_damaging(0.951) TCGA-S5-A6DX-01 2 213914550 213914550 T C IKZF2 Missense_Mutation p.N154S 0.24 deleterious(0.05) probably_damaging(0.996) TCGA-S5-A6DX-01 2 217142472 217142472 G A MARCH4 Missense_Mutation p.S263L 0.32 deleterious(0.03) possibly_damaging(0.54) TCGA-S5-A6DX-01 2 219266376 219266376 G A CTDSP1 Missense_Mutation p.A53T 0.20 tolerated(0.43) benign(0.086) TCGA-S5-A6DX-01 2 219294199 219294199 C G VIL1 Silent p.L253L 0.10 TCGA-S5-A6DX-01 2 219540917 219540917 C T STK36 Silent p.F200F 0.15 TCGA-S5-A6DX-01 2 219618351 219618351 G C TTLL4 Silent p.V1101V 0.20 TCGA-S5-A6DX-01 2 219674337 219674337 C G CYP27A1 Missense_Mutation p.S98C 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-S5-A6DX-01 2 219674351 219674351 C T CYP27A1 Nonsense_Mutation p.Q103* 0.20 TCGA-S5-A6DX-01 2 219674417 219674417 C T CYP27A1 Missense_Mutation p.P125S 0.19 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 2 219674418 219674418 C T CYP27A1 Missense_Mutation p.P125L 0.18 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 2 219888038 219888038 C T CCDC108 Missense_Mutation p.R904H 0.15 tolerated(0.35) benign(0.018) TCGA-S5-A6DX-01 2 220366195 220366195 C T GMPPA Intron 0.31 TCGA-S5-A6DX-01 2 223496381 223496381 C G FARSB Missense_Mutation p.R243T 0.21 deleterious(0) benign(0.069) TCGA-S5-A6DX-01 2 227985737 227985737 C A COL4A4 Missense_Mutation p.G107V 0.09 probably_damaging(1) TCGA-S5-A6DX-01 2 228497736 228497736 C T C2orf83 Silent p.V22V 0.29 TCGA-S5-A6DX-01 2 230223235 230223235 G C DNER 3'UTR 0.43 TCGA-S5-A6DX-01 2 235950392 235950392 G A SH3BP4 Missense_Mutation p.G327R 0.28 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 2 238234235 238234235 G A COL6A3 Missense_Mutation p.S3154L 0.28 unknown(0) TCGA-S5-A6DX-01 2 238296450 238296450 G A COL6A3 Missense_Mutation p.R363C 0.29 probably_damaging(0.973) TCGA-S5-A6DX-01 2 238427254 238427254 C T MLPH Missense_Mutation p.S173L 0.29 tolerated(0.32) benign(0.007) TCGA-S5-A6DX-01 2 24239106 24239106 C T MFSD2B Silent p.F101F 0.09 TCGA-S5-A6DX-01 2 242511735 242511735 C A BOK Silent p.V179V 0.15 TCGA-S5-A6DX-01 2 242662478 242662478 G A ING5 Missense_Mutation p.D203N 0.34 deleterious(0) probably_damaging(0.968) TCGA-S5-A6DX-01 2 242758308 242758308 C A NEU4 Missense_Mutation p.N476K 0.26 deleterious(0.01) probably_damaging(0.976) TCGA-S5-A6DX-01 2 27275793 27275793 G A AGBL5 5'UTR 0.24 TCGA-S5-A6DX-01 2 27305911 27305911 C G EMILIN1 Missense_Mutation p.S491C 0.25 possibly_damaging(0.614) TCGA-S5-A6DX-01 2 29940456 29940456 G A ALK Missense_Mutation p.R259C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-S5-A6DX-01 2 39041020 39041020 C T DHX57 Silent p.E1208E 0.30 TCGA-S5-A6DX-01 2 39515359 39515359 G C MAP4K3 Missense_Mutation p.I459M 0.37 deleterious(0.04) benign(0.043) TCGA-S5-A6DX-01 2 46588021 46588021 C G EPAS1 Intron 0.27 TCGA-S5-A6DX-01 2 47301006 47301006 G T TTC7A Nonsense_Mutation p.E841* 0.45 TCGA-S5-A6DX-01 2 54159158 54159158 G A PSME4 Missense_Mutation p.S377F 0.13 deleterious(0) benign(0.033) TCGA-S5-A6DX-01 2 54856469 54856469 C T SPTBN1 Missense_Mutation p.S733L 0.19 deleterious(0) benign(0.044) TCGA-S5-A6DX-01 2 60780399 60780399 G C BCL11A Missense_Mutation p.R3G 0.17 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-S5-A6DX-01 2 62095681 62095681 C G CCT4 3'UTR 0.20 TCGA-S5-A6DX-01 2 64796345 64796345 G A AFTPH Missense_Mutation p.R736Q 0.26 deleterious(0) probably_damaging(0.984) TCGA-S5-A6DX-01 2 71357781 71357781 G A MPHOSPH10 5'UTR 0.30 TCGA-S5-A6DX-01 2 73315415 73315415 G C RAB11FIP5 Missense_Mutation p.S444C 0.15 deleterious(0) possibly_damaging(0.599) TCGA-S5-A6DX-01 2 74729987 74729987 C G LBX2 5'UTR 0.22 TCGA-S5-A6DX-01 2 74785853 74785853 G A M1AP Missense_Mutation p.S528L 0.12 deleterious_low_confidence(0.01) benign(0.075) TCGA-S5-A6DX-01 2 86090487 86090487 G C ST3GAL5 Silent p.L68L 0.31 TCGA-S5-A6DX-01 2 88926543 88926543 C G EIF2AK3 Missense_Mutation p.E84Q 0.25 tolerated(0.07) benign(0.058) TCGA-S5-A6DX-01 2 89459250 89459250 C T IGKV6-21 Silent p.Q109Q 0.17 TCGA-S5-A6DX-01 2 98451309 98451309 A C TMEM131 Missense_Mutation p.I295R 0.32 deleterious(0) probably_damaging(0.997) TCGA-S5-A6DX-01 3 101384254 101384254 C T ZBTB11 Missense_Mutation p.E393K 0.28 tolerated_low_confidence(0.4) benign(0.001) TCGA-S5-A6DX-01 3 108117585 108117585 C T MYH15 Missense_Mutation p.E1698K 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-S5-A6DX-01 3 11072913 11072913 G C SLC6A1 Missense_Mutation p.M458I 0.27 tolerated(0.27) benign(0.135) TCGA-S5-A6DX-01 3 111958851 111958851 G C SLC9C1 Missense_Mutation p.L428V 0.29 deleterious(0) probably_damaging(0.973) TCGA-S5-A6DX-01 3 118948788 118948788 C T B4GALT4 Silent p.K53K 0.26 TCGA-S5-A6DX-01 3 121707120 121707120 G C ILDR1 3'UTR 0.22 TCGA-S5-A6DX-01 3 122354848 122354848 C G PARP15 Silent p.L646L 0.29 TCGA-S5-A6DX-01 3 125238896 125238896 C G SNX4 Missense_Mutation p.E41Q 0.16 tolerated_low_confidence(0.39) benign(0) TCGA-S5-A6DX-01 3 129155755 129155755 C T MBD4 Silent p.K244K 0.24 TCGA-S5-A6DX-01 3 129156623 129156623 C G MBD4 Missense_Mutation p.R92T 0.27 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 3 129231226 129231226 C T IFT122 Silent p.P1037P 0.30 TCGA-S5-A6DX-01 3 130318627 130318627 C A COL6A6 Silent p.P1542P 0.23 TCGA-S5-A6DX-01 3 133363149 133363149 C G TOPBP1 Missense_Mutation p.L521F 0.19 tolerated(0.74) benign(0.001) TCGA-S5-A6DX-01 3 133478167 133478167 G T TF Missense_Mutation p.K399N 0.30 tolerated(0.08) probably_damaging(0.961) TCGA-S5-A6DX-01 3 134514465 134514465 C G EPHB1 5'UTR 0.26 TCGA-S5-A6DX-01 3 135974724 135974724 C A PCCB Silent p.I70I 0.30 TCGA-S5-A6DX-01 3 136016834 136016834 G C PCCB Missense_Mutation p.L288F 0.22 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-S5-A6DX-01 3 138187708 138187708 C T ESYT3 Silent p.L473L 0.25 TCGA-S5-A6DX-01 3 13916659 13916659 G A WNT7A Missense_Mutation p.S28L 0.17 tolerated(0.13) possibly_damaging(0.461) TCGA-S5-A6DX-01 3 150321119 150321119 G C SELT 5'UTR 0.34 TCGA-S5-A6DX-01 3 150321170 150321170 C G SELT Silent p.L7L 0.25 TCGA-S5-A6DX-01 3 15613211 15613211 C T HACL1 Silent p.L353L 0.22 TCGA-S5-A6DX-01 3 15626761 15626761 G C HACL1 Missense_Mutation p.S183C 0.24 deleterious(0.02) possibly_damaging(0.684) TCGA-S5-A6DX-01 3 158310242 158310242 C T MLF1 Nonsense_Mutation p.R39* 0.22 TCGA-S5-A6DX-01 3 161216964 161216964 A G OTOL1 Missense_Mutation p.K124E 0.26 deleterious(0.03) unknown(0) TCGA-S5-A6DX-01 3 164755726 164755726 G A SI Silent p.I796I 0.18 TCGA-S5-A6DX-01 3 168864352 168864352 G C MECOM 5'Flank 0.35 TCGA-S5-A6DX-01 3 179123158 179123158 C G GNB4 Missense_Mutation p.D246H 0.27 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 3 180685929 180685929 G A FXR1 Missense_Mutation p.R430Q 0.23 tolerated(0.07) possibly_damaging(0.836) TCGA-S5-A6DX-01 3 184297369 184297369 G A EPHB3 Missense_Mutation p.E636K 0.20 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 3 186961381 186961381 C T MASP1 Silent p.L373L 0.26 TCGA-S5-A6DX-01 3 187089033 187089033 G A RTP4 Missense_Mutation p.E205K 0.22 tolerated(0.58) benign(0.004) TCGA-S5-A6DX-01 3 193349413 193349413 G C OPA1 Missense_Mutation p.E250Q 0.23 tolerated(0.19) benign(0.04) TCGA-S5-A6DX-01 3 193855956 193855956 C A HES1 Missense_Mutation p.N259K 0.27 tolerated(0.89) benign(0.039) TCGA-S5-A6DX-01 3 195505708 195505708 G A MUC4 Missense_Mutation p.S4248L 0.19 possibly_damaging(0.908) TCGA-S5-A6DX-01 3 195511118 195511118 G A MUC4 Missense_Mutation p.H2445Y 0.23 unknown(0) TCGA-S5-A6DX-01 3 196235078 196235078 G A SMCO1 Missense_Mutation p.L109F 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-S5-A6DX-01 3 196669248 196669248 C G NCBP2 Intron 0.29 TCGA-S5-A6DX-01 3 26751074 26751074 G A LRRC3B 5'UTR 0.10 TCGA-S5-A6DX-01 3 2928870 2928870 G C CNTN4 Missense_Mutation p.R301T 0.23 deleterious(0) benign(0.249) TCGA-S5-A6DX-01 3 3189876 3189876 G A TRNT1 3'UTR 0.27 TCGA-S5-A6DX-01 3 36897517 36897517 G A TRANK1 Silent p.L1188L 0.23 TCGA-S5-A6DX-01 3 37365276 37365276 C G GOLGA4 Silent p.V655V 0.30 TCGA-S5-A6DX-01 3 38519699 38519699 C T ACVR2B Silent p.I146I 0.07 TCGA-S5-A6DX-01 3 39450074 39450074 C A RPSA Intron 0.26 TCGA-S5-A6DX-01 3 41938431 41938431 C T ULK4 Silent p.Q471Q 0.27 TCGA-S5-A6DX-01 3 43121105 43121105 C A POMGNT2 3'UTR 0.26 TCGA-S5-A6DX-01 3 46874529 46874529 G C PRSS42 Nonsense_Mutation p.S180* 0.18 TCGA-S5-A6DX-01 3 48456746 48456746 C G PLXNB1 Missense_Mutation p.E1269Q 0.25 deleterious(0.04) benign(0.289) TCGA-S5-A6DX-01 3 48505459 48505459 G C ATRIP Silent p.L634L 0.33 TCGA-S5-A6DX-01 3 62522214 62522214 G C CADPS Missense_Mutation p.S670C 0.20 deleterious(0) possibly_damaging(0.7) TCGA-S5-A6DX-01 3 62739200 62739200 C T CADPS Silent p.L268L 0.26 TCGA-S5-A6DX-01 3 71804310 71804310 G C GPR27 Silent p.L370L 0.15 TCGA-S5-A6DX-01 3 8787526 8787526 C T CAV3 Silent p.I143I 0.27 TCGA-S5-A6DX-01 3 98311819 98311819 G A CPOX Missense_Mutation p.S177F 0.21 tolerated(0.21) possibly_damaging(0.559) TCGA-S5-A6DX-01 3 9988963 9988963 C T PRRT3 Missense_Mutation p.D632N 0.56 tolerated(0.24) benign(0.043) TCGA-S5-A6DX-01 4 104116384 104116384 C G CENPE Missense_Mutation p.D122H 0.11 probably_damaging(0.938) TCGA-S5-A6DX-01 4 113569554 113569554 C T LARP7 Intron 0.28 TCGA-S5-A6DX-01 4 122607479 122607479 C T ANXA5 Missense_Mutation p.D20N 0.12 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 4 146807024 146807024 G A ZNF827 Missense_Mutation p.S518L 0.14 deleterious(0.04) benign(0.049) TCGA-S5-A6DX-01 4 151504921 151504921 G A MAB21L2 Missense_Mutation p.R247Q 0.11 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 4 152054377 152054377 C T SH3D19 Missense_Mutation p.C576Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 4 155665756 155665756 C G LRAT Missense_Mutation p.S93C 0.15 deleterious(0) probably_damaging(0.976) TCGA-S5-A6DX-01 4 1836638 1836638 C T LETM1 Silent p.E270E 0.16 TCGA-S5-A6DX-01 4 2242505 2242505 C G HAUS3 Missense_Mutation p.E57Q 0.18 deleterious(0) probably_damaging(0.976) TCGA-S5-A6DX-01 4 2692426 2692426 G C FAM193A Silent p.G553G 0.16 TCGA-S5-A6DX-01 4 2945860 2945860 C G NOP14 Missense_Mutation p.E611Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-S5-A6DX-01 4 3424661 3424661 C T RGS12 Silent p.I1021I 0.13 TCGA-S5-A6DX-01 4 37591946 37591946 G A C4orf19 Missense_Mutation p.G90E 0.29 tolerated(0.12) possibly_damaging(0.691) TCGA-S5-A6DX-01 4 40122320 40122320 C A N4BP2 Silent p.L863L 0.26 TCGA-S5-A6DX-01 4 40440449 40440449 G C RBM47 Missense_Mutation p.F154L 0.30 deleterious(0.01) possibly_damaging(0.867) TCGA-S5-A6DX-01 4 42583701 42583701 C G ATP8A1 Missense_Mutation p.L257F 0.12 deleterious(0) probably_damaging(0.998) TCGA-S5-A6DX-01 4 48422432 48422432 C T SLAIN2 Missense_Mutation p.R551C 0.31 deleterious(0) probably_damaging(0.997) TCGA-S5-A6DX-01 4 6599955 6599955 G A MAN2B2 Missense_Mutation p.E427K 0.21 deleterious(0.01) possibly_damaging(0.904) TCGA-S5-A6DX-01 4 66467437 66467437 C T EPHA5 Missense_Mutation p.A278T 0.32 tolerated(0.16) benign(0.013) TCGA-S5-A6DX-01 4 75065564 75065564 G A MTHFD2L Missense_Mutation p.D169N 0.34 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 4 81207813 81207813 T G FGF5 Missense_Mutation p.F265C 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-S5-A6DX-01 4 83970465 83970465 G A COPS4 Missense_Mutation p.E101K 0.34 deleterious(0) probably_damaging(0.928) TCGA-S5-A6DX-01 4 85598446 85598446 C T WDFY3 Missense_Mutation p.E3455K 0.19 deleterious(0.03) probably_damaging(0.997) TCGA-S5-A6DX-01 4 85600102 85600102 C A WDFY3 Nonsense_Mutation p.E3373* 0.12 TCGA-S5-A6DX-01 4 8588832 8588832 C T GPR78 Silent p.L278L 0.21 TCGA-S5-A6DX-01 4 89390350 89390350 G A HERC5 Missense_Mutation p.E393K 0.33 tolerated(0.07) benign(0.063) TCGA-S5-A6DX-01 4 99338565 99338565 C G RAP1GDS1 Missense_Mutation p.Q320E 0.30 tolerated(0.12) benign(0.098) TCGA-S5-A6DX-01 5 115152055 115152055 C T CDO1 Missense_Mutation p.D14N 0.25 deleterious(0.01) benign(0.075) TCGA-S5-A6DX-01 5 121785560 121785560 C T SNCAIP Missense_Mutation p.T538M 0.27 deleterious(0.04) benign(0.097) TCGA-S5-A6DX-01 5 130808290 130808290 G C RAPGEF6 Silent p.S743S 0.29 TCGA-S5-A6DX-01 5 131931350 131931350 G C RAD50 Missense_Mutation p.Q685H 0.19 tolerated(0.29) benign(0.029) TCGA-S5-A6DX-01 5 134235319 134235319 C T TXNDC15 Nonsense_Mutation p.R343* 0.15 TCGA-S5-A6DX-01 5 137593630 137593630 G C GFRA3 Silent p.L161L 0.23 TCGA-S5-A6DX-01 5 137750829 137750829 G C KDM3B Missense_Mutation p.E1070Q 0.35 tolerated(0.26) benign(0.018) TCGA-S5-A6DX-01 5 139919021 139919021 C G ANKHD1 Intron 0.25 TCGA-S5-A6DX-01 5 139946757 139946757 G C SLC35A4 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) benign(0.38) TCGA-S5-A6DX-01 5 140187198 140187198 C G PCDHA4 Missense_Mutation p.I142M 0.31 tolerated_low_confidence(0.05) benign(0.352) TCGA-S5-A6DX-01 5 140559962 140559962 G C PCDHB8 Missense_Mutation p.E783Q 0.51 deleterious_low_confidence(0.04) benign(0.04) TCGA-S5-A6DX-01 5 140564192 140564192 C G PCDHB16 Silent p.L686L 0.55 TCGA-S5-A6DX-01 5 140755833 140755833 C T PCDHGA6 Missense_Mutation p.S728L 0.27 deleterious_low_confidence(0) benign(0.022) TCGA-S5-A6DX-01 5 140793343 140793343 G C PCDHGA10 Missense_Mutation p.E201Q 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.63) TCGA-S5-A6DX-01 5 142500655 142500655 C A ARHGAP26 Silent p.I547I 0.30 TCGA-S5-A6DX-01 5 147803635 147803635 C T FBXO38 Missense_Mutation p.H565Y 0.21 tolerated_low_confidence(0.13) benign(0.095) TCGA-S5-A6DX-01 5 149459864 149459864 C T CSF1R Missense_Mutation p.V115M 0.26 deleterious(0.04) probably_damaging(0.995) TCGA-S5-A6DX-01 5 150311067 150311067 G A ZNF300P1 RNA 0.24 TCGA-S5-A6DX-01 5 159626144 159626144 G A FABP6 Missense_Mutation p.E11K 0.35 deleterious_low_confidence(0) unknown(0) TCGA-S5-A6DX-01 5 159840543 159840543 C G SLU7 Missense_Mutation p.D164H 0.23 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 5 167645646 167645646 G C TENM2 Missense_Mutation p.E1584Q 0.18 tolerated(0.05) probably_damaging(0.971) TCGA-S5-A6DX-01 5 17353990 17353990 C T CTD-2139B15.2 5'Flank 0.14 TCGA-S5-A6DX-01 5 176795872 176795872 G T RGS14 Missense_Mutation p.R335L 0.15 tolerated(0.28) probably_damaging(0.966) TCGA-S5-A6DX-01 5 176886132 176886132 G C DBN1 Missense_Mutation p.P367A 0.22 tolerated(0.07) benign(0.108) TCGA-S5-A6DX-01 5 179050062 179050062 C T HNRNPH1 Missense_Mutation p.D25N 0.23 tolerated(0.08) benign(0.426) TCGA-S5-A6DX-01 5 179143173 179143173 C G CANX Silent p.L263L 0.30 TCGA-S5-A6DX-01 5 32789697 32789697 G A AC026703.1 Missense_Mutation p.V64I 0.34 benign(0.208) TCGA-S5-A6DX-01 5 32789968 32789968 C G NPR3 3'UTR 0.22 TCGA-S5-A6DX-01 5 50683546 50683546 C T ISL1 Silent p.L147L 0.22 TCGA-S5-A6DX-01 5 54721826 54721826 G C PPAP2A Silent p.L198L 0.30 TCGA-S5-A6DX-01 5 60240781 60240781 G A ERCC8 Missense_Mutation p.R19W 0.20 deleterious(0.04) possibly_damaging(0.64) TCGA-S5-A6DX-01 5 64920102 64920102 C T TRIM23 5'UTR 0.27 TCGA-S5-A6DX-01 5 71622442 71622442 C A PTCD2 Missense_Mutation p.T75K 0.23 tolerated(0.87) benign(0.19) TCGA-S5-A6DX-01 5 75996938 75996938 G C IQGAP2 Missense_Mutation p.E1469Q 0.22 tolerated(0.13) probably_damaging(0.962) TCGA-S5-A6DX-01 5 78317416 78317416 G C DMGDH Intron 0.27 TCGA-S5-A6DX-01 5 78347189 78347189 C T DMGDH Silent p.L222L 0.26 TCGA-S5-A6DX-01 5 79855575 79855575 C G ANKRD34B Silent p.L88L 0.28 TCGA-S5-A6DX-01 5 80681589 80681589 C G ACOT12 Missense_Mutation p.E62Q 0.32 deleterious(0.01) benign(0.211) TCGA-S5-A6DX-01 5 881225 881225 C G BRD9 Missense_Mutation p.D347H 0.34 deleterious(0.03) possibly_damaging(0.466) TCGA-S5-A6DX-01 6 106973173 106973173 G A AIM1 Missense_Mutation p.E1034K 0.40 tolerated(0.19) possibly_damaging(0.612) TCGA-S5-A6DX-01 6 119221997 119221997 C G ASF1A Missense_Mutation p.S59C 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-S5-A6DX-01 6 129785439 129785439 C T LAMA2 Nonsense_Mutation p.Q2333* 0.33 TCGA-S5-A6DX-01 6 13470482 13470482 C G AL583828.1 Missense_Mutation p.E11Q 0.20 possibly_damaging(0.607) TCGA-S5-A6DX-01 6 136594257 136594257 C G BCLAF1 Missense_Mutation p.E641Q 0.10 tolerated(0.3) possibly_damaging(0.607) TCGA-S5-A6DX-01 6 136597120 136597120 G C BCLAF1 Missense_Mutation p.L515V 0.12 tolerated(0.08) possibly_damaging(0.567) TCGA-S5-A6DX-01 6 13792194 13792194 T C MCUR1 Missense_Mutation p.T314A 0.18 deleterious(0.02) probably_damaging(0.983) TCGA-S5-A6DX-01 6 139106381 139106381 G A CCDC28A Missense_Mutation p.E204K 0.42 deleterious(0) probably_damaging(0.978) TCGA-S5-A6DX-01 6 143094927 143094927 C T HIVEP2 Missense_Mutation p.E317K 0.40 tolerated(0.07) benign(0.41) TCGA-S5-A6DX-01 6 152694288 152694288 G C SYNE1 Missense_Mutation p.L3131V 0.46 probably_damaging(0.996) TCGA-S5-A6DX-01 6 159457744 159457744 C T TAGAP Silent p.P437P 0.45 TCGA-S5-A6DX-01 6 160221788 160221788 T G PNLDC1 Missense_Mutation p.F10V 0.38 tolerated(0.57) unknown(0) TCGA-S5-A6DX-01 6 16143343 16143343 G A MYLIP Missense_Mutation p.G186D 0.16 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 6 166575932 166575932 C T T Intron 0.43 TCGA-S5-A6DX-01 6 170105473 170105473 G C C6orf120 3'UTR 0.43 TCGA-S5-A6DX-01 6 26188949 26188949 G A HIST1H4D 3'UTR 0.25 TCGA-S5-A6DX-01 6 26197187 26197187 C T HIST1H3D Missense_Mutation p.E98K 0.10 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-S5-A6DX-01 6 26370779 26370779 C T BTN3A2 Silent p.I221I 0.20 TCGA-S5-A6DX-01 6 3154105 3154105 C T TUBB2A Missense_Mutation p.E444K 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-S5-A6DX-01 6 31548683 31548683 C G LTB Missense_Mutation p.E180Q 0.25 tolerated(0.21) possibly_damaging(0.704) TCGA-S5-A6DX-01 6 31939432 31939432 C T DXO Silent p.K7K 0.35 TCGA-S5-A6DX-01 6 31939893 31939893 C T STK19 Silent p.T40T 0.14 TCGA-S5-A6DX-01 6 32168733 32168733 G A NOTCH4 Missense_Mutation p.P1397L 0.14 deleterious(0.04) possibly_damaging(0.815) TCGA-S5-A6DX-01 6 32942329 32942329 T C BRD2 Silent p.Y40Y 0.17 TCGA-S5-A6DX-01 6 33041303 33041303 C G HLA-DPA1 Missense_Mutation p.L15F 0.33 deleterious(0.01) possibly_damaging(0.721) TCGA-S5-A6DX-01 6 33175698 33175698 C T SLC39A7 3'Flank 0.22 TCGA-S5-A6DX-01 6 33283454 33283454 G C ZBTB22 Missense_Mutation p.R414G 0.17 tolerated(0.08) benign(0.255) TCGA-S5-A6DX-01 6 35021903 35021903 G C ANKS1A Missense_Mutation p.E680Q 0.14 deleterious(0.05) benign(0.067) TCGA-S5-A6DX-01 6 36343650 36343650 G C ETV7 Nonsense_Mutation p.S102* 0.13 TCGA-S5-A6DX-01 6 36446932 36446932 C G KCTD20 Missense_Mutation p.R157G 0.26 deleterious(0) probably_damaging(0.993) TCGA-S5-A6DX-01 6 36652044 36652044 G A CDKN1A Missense_Mutation p.E56K 0.13 deleterious(0) probably_damaging(0.91) TCGA-S5-A6DX-01 6 38650627 38650627 C T GLO1 Silent p.E111E 0.13 TCGA-S5-A6DX-01 6 38650632 38650632 C T GLO1 Missense_Mutation p.D110N 0.13 deleterious(0.01) possibly_damaging(0.498) TCGA-S5-A6DX-01 6 38757654 38757654 A - DNAH8 Frame_Shift_Del p.K671Rfs*6 0.18 TCGA-S5-A6DX-01 6 39196911 39196911 G A KCNK5 5'UTR 0.26 TCGA-S5-A6DX-01 6 40360112 40360112 G A LRFN2 Missense_Mutation p.P647L 0.28 tolerated(0.2) benign(0.017) TCGA-S5-A6DX-01 6 4069592 4069592 G T FAM217A Missense_Mutation p.R289S 0.31 deleterious(0) probably_damaging(0.96) TCGA-S5-A6DX-01 6 43227297 43227297 G A TTBK1 Missense_Mutation p.R426Q 0.11 possibly_damaging(0.565) TCGA-S5-A6DX-01 6 43608145 43608145 G A MAD2L1BP Missense_Mutation p.V266M 0.21 deleterious(0.03) probably_damaging(1) TCGA-S5-A6DX-01 6 44195021 44195021 C T SLC29A1 5'UTR 0.20 TCGA-S5-A6DX-01 6 44224447 44224447 G A SLC35B2 Silent p.F60F 0.29 TCGA-S5-A6DX-01 6 44387282 44387282 C G CDC5L Missense_Mutation p.P397A 0.26 deleterious(0.02) possibly_damaging(0.896) TCGA-S5-A6DX-01 6 44387332 44387332 C G CDC5L Missense_Mutation p.F413L 0.21 tolerated(0.23) benign(0.021) TCGA-S5-A6DX-01 6 45870875 45870875 C G CLIC5 Missense_Mutation p.E395Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-S5-A6DX-01 6 45917027 45917027 C G CLIC5 Missense_Mutation p.E248Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-S5-A6DX-01 6 51524111 51524111 C T PKHD1 Missense_Mutation p.E3605K 0.14 tolerated(0.11) benign(0.059) TCGA-S5-A6DX-01 6 51524343 51524343 C T PKHD1 Silent p.L3527L 0.21 TCGA-S5-A6DX-01 6 53989400 53989400 C G MLIP Missense_Mutation p.Q117E 0.11 tolerated(0.72) benign(0.006) TCGA-S5-A6DX-01 6 56955033 56955033 C G ZNF451 5'UTR 0.38 TCGA-S5-A6DX-01 6 64413516 64413516 C T PHF3 Nonsense_Mutation p.Q1108* 0.27 TCGA-S5-A6DX-01 6 70589468 70589468 C T COL19A1 Silent p.L3L 0.24 TCGA-S5-A6DX-01 6 71269609 71269609 C G FAM135A Silent p.L1511L 0.19 TCGA-S5-A6DX-01 6 7229506 7229506 C T RREB1 Nonsense_Mutation p.Q392* 0.19 TCGA-S5-A6DX-01 6 74351436 74351436 C G SLC17A5 Missense_Mutation p.R168T 0.25 deleterious(0) probably_damaging(0.996) TCGA-S5-A6DX-01 6 75899525 75899525 G T COL12A1 Missense_Mutation p.S134Y 0.32 probably_damaging(0.996) TCGA-S5-A6DX-01 6 83075883 83075883 G C TPBG Missense_Mutation p.R402T 0.18 deleterious(0) probably_damaging(0.994) TCGA-S5-A6DX-01 6 86199302 86199302 G C NT5E Missense_Mutation p.D399H 0.32 deleterious(0) possibly_damaging(0.897) TCGA-S5-A6DX-01 6 99347252 99347252 T C FBXL4 Silent p.L403L 0.41 TCGA-S5-A6DX-01 7 100349748 100349748 G C ZAN Missense_Mutation p.E674Q 0.42 benign(0.422) TCGA-S5-A6DX-01 7 100490864 100490864 G A ACHE Silent p.F330F 0.26 TCGA-S5-A6DX-01 7 100608842 100608842 G A MUC3A Missense_Mutation p.D741N 0.19 tolerated(0.15) benign(0.255) TCGA-S5-A6DX-01 7 103131252 103131252 C T RELN Silent p.Q3156Q 0.30 TCGA-S5-A6DX-01 7 1049692 1049692 C G C7orf50 Missense_Mutation p.E73Q 0.35 tolerated(0.06) probably_damaging(0.986) TCGA-S5-A6DX-01 7 107335135 107335135 C T SLC26A4 Silent p.L471L 0.27 TCGA-S5-A6DX-01 7 107531711 107531711 C G DLD Missense_Mutation p.R6G 0.14 tolerated_low_confidence(0.15) benign(0.003) TCGA-S5-A6DX-01 7 110764435 110764435 C T LRRN3 Missense_Mutation p.S536L 0.27 tolerated(0.1) probably_damaging(0.965) TCGA-S5-A6DX-01 7 114302141 114302141 A T FOXP2 Missense_Mutation p.S582C 0.31 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 7 11676128 11676128 C G THSD7A Silent p.R217R 0.31 TCGA-S5-A6DX-01 7 127255411 127255411 C T PAX4 Intron 0.27 TCGA-S5-A6DX-01 7 127954931 127954931 G C RBM28 Missense_Mutation p.S644C 0.26 deleterious(0.03) benign(0.01) TCGA-S5-A6DX-01 7 131864507 131864507 C T PLXNA4 Silent p.L1271L 0.34 TCGA-S5-A6DX-01 7 135310052 135310052 C A NUP205 Silent p.L1540L 0.25 TCGA-S5-A6DX-01 7 135330246 135330246 G C NUP205 Missense_Mutation p.W1905S 0.20 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 7 135330313 135330313 G A NUP205 Silent p.S1927S 0.26 TCGA-S5-A6DX-01 7 142032003 142032003 G A TRBV7-1 5'Flank 0.13 TCGA-S5-A6DX-01 7 142111622 142111622 C T TRBV5-7 Silent p.V38V 0.25 TCGA-S5-A6DX-01 7 142162315 142162315 C G TRBV6-6 Missense_Mutation p.G17R 0.21 deleterious(0.02) possibly_damaging(0.612) TCGA-S5-A6DX-01 7 142750262 142750262 G A OR6V1 Silent p.V275V 0.06 TCGA-S5-A6DX-01 7 143140958 143140958 C G TAS2R60 Missense_Mutation p.S138C 0.22 tolerated(0.05) probably_damaging(0.979) TCGA-S5-A6DX-01 7 143955808 143955808 C G OR2A7 Missense_Mutation p.G305A 0.06 tolerated(0.54) benign(0.001) TCGA-S5-A6DX-01 7 148768478 148768478 G T ZNF786 Missense_Mutation p.F462L 0.45 deleterious(0.01) possibly_damaging(0.884) TCGA-S5-A6DX-01 7 152139960 152139960 G C AC005631.1 3'Flank 0.20 TCGA-S5-A6DX-01 7 158534274 158534274 G A ESYT2 Missense_Mutation p.S730L 0.30 deleterious(0) probably_damaging(0.969) TCGA-S5-A6DX-01 7 16734478 16734478 G C BZW2 Missense_Mutation p.R224T 0.24 deleterious(0) benign(0.023) TCGA-S5-A6DX-01 7 21639562 21639562 C T DNAH11 Missense_Mutation p.P942L 0.34 probably_damaging(1) TCGA-S5-A6DX-01 7 21640365 21640365 C T DNAH11 Silent p.I1024I 0.28 TCGA-S5-A6DX-01 7 24745822 24745822 G A DFNA5 Silent p.F388F 0.29 TCGA-S5-A6DX-01 7 26236976 26236976 C G HNRNPA2B1 Missense_Mutation p.D87H 0.27 deleterious(0) probably_damaging(0.999) TCGA-S5-A6DX-01 7 36763677 36763677 G A AOAH Missense_Mutation p.A26V 0.33 tolerated(0.31) benign(0.069) TCGA-S5-A6DX-01 7 43484403 43484403 G A HECW1 Silent p.T544T 0.27 TCGA-S5-A6DX-01 7 44737008 44737008 G C OGDH Missense_Mutation p.K697N 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-S5-A6DX-01 7 44747199 44747199 G A OGDH Missense_Mutation p.D939N 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-S5-A6DX-01 7 4899946 4899946 G T PAPOLB Missense_Mutation p.P498H 0.26 deleterious(0.01) probably_damaging(0.948) TCGA-S5-A6DX-01 7 50595857 50595857 G A DDC Missense_Mutation p.A231V 0.31 tolerated(0.1) benign(0.173) TCGA-S5-A6DX-01 7 50595890 50595890 G C DDC Missense_Mutation p.S220C 0.26 deleterious(0.01) possibly_damaging(0.575) TCGA-S5-A6DX-01 7 57188186 57188186 G A ZNF479 Silent p.L312L 0.20 TCGA-S5-A6DX-01 7 64452717 64452717 C T ERV3-1 Missense_Mutation p.G230S 0.31 tolerated(0.06) benign(0.015) TCGA-S5-A6DX-01 7 70227936 70227936 G T AUTS2 Nonsense_Mutation p.E275* 0.25 TCGA-S5-A6DX-01 7 73038787 73038787 C T MLXIPL Silent p.L12L 0.42 TCGA-S5-A6DX-01 7 73245345 73245345 C A CLDN4 5'UTR 0.45 TCGA-S5-A6DX-01 7 81746426 81746426 T C CACNA2D1 Missense_Mutation p.N154D 0.29 tolerated(0.25) benign(0.001) TCGA-S5-A6DX-01 7 82997021 82997021 T C SEMA3E Missense_Mutation p.R737G 0.28 tolerated(0.06) benign(0.046) TCGA-S5-A6DX-01 7 83031949 83031949 G C SEMA3E Missense_Mutation p.S381C 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-S5-A6DX-01 7 83592635 83592635 C T SEMA3A Silent p.E582E 0.24 TCGA-S5-A6DX-01 7 91691641 91691641 G C AKAP9 Missense_Mutation p.E1940Q 0.21 probably_damaging(0.999) TCGA-S5-A6DX-01 7 98592432 98592432 G C TRRAP Missense_Mutation p.D3410H 0.30 probably_damaging(0.997) TCGA-S5-A6DX-01 7 98984382 98984382 G A ARPC1B Missense_Mutation p.E47K 0.36 tolerated(0.64) benign(0.422) TCGA-S5-A6DX-01 8 101243457 101243457 C T SPAG1 Silent p.L643L 0.36 TCGA-S5-A6DX-01 8 101300374 101300374 G C RNF19A Missense_Mutation p.S10C 0.33 tolerated_low_confidence(0.14) benign(0.018) TCGA-S5-A6DX-01 8 105361290 105361290 C A DCSTAMP Silent p.T170T 0.18 TCGA-S5-A6DX-01 8 123964916 123964916 C T ZHX2 Missense_Mutation p.S389F 0.27 deleterious(0.01) possibly_damaging(0.534) TCGA-S5-A6DX-01 8 124243718 124243718 G C C8orf76 Missense_Mutation p.L213V 0.26 tolerated(0.38) benign(0.089) TCGA-S5-A6DX-01 8 125072620 125072620 C T FER1L6 Intron 0.29 TCGA-S5-A6DX-01 8 128428696 128428696 G C POU5F1B Missense_Mutation p.K195N 0.21 deleterious(0.05) probably_damaging(0.974) TCGA-S5-A6DX-01 8 133900348 133900348 G A TG Missense_Mutation p.D766N 0.34 tolerated(0.24) benign(0.004) TCGA-S5-A6DX-01 8 144657592 144657592 C G NAPRT1 Splice_Site p.X431_splice 0.43 TCGA-S5-A6DX-01 8 145512859 145512859 C T BOP1 Missense_Mutation p.E76K 0.45 tolerated(0.33) benign(0.305) TCGA-S5-A6DX-01 8 27321150 27321150 G C CHRNA2 Missense_Mutation p.I270M 0.41 deleterious(0) possibly_damaging(0.722) TCGA-S5-A6DX-01 8 42302198 42302198 G C SLC20A2 Silent p.L232L 0.37 TCGA-S5-A6DX-01 8 55372418 55372418 G A SOX17 Missense_Mutation p.V370M 0.36 tolerated(0.1) probably_damaging(0.993) TCGA-S5-A6DX-01 8 61777946 61777946 G A CHD7 Silent p.L2816L 0.23 TCGA-S5-A6DX-01 8 6338302 6338302 G A MCPH1 Missense_Mutation p.E681K 0.42 deleterious(0.03) probably_damaging(0.952) TCGA-S5-A6DX-01 8 63927883 63927883 G A GGH 3'UTR 0.29 TCGA-S5-A6DX-01 8 71593403 71593403 A G XKR9 Missense_Mutation p.Q37R 0.28 tolerated(0.09) benign(0.023) TCGA-S5-A6DX-01 8 73850242 73850242 G A KCNB2 Silent p.K884K 0.28 TCGA-S5-A6DX-01 8 74888469 74888469 C T TMEM70 5'UTR 0.43 TCGA-S5-A6DX-01 8 75227800 75227800 C G JPH1 Missense_Mutation p.Q145H 0.24 deleterious(0) probably_damaging(0.997) TCGA-S5-A6DX-01 8 80549077 80549077 G A STMN2 Silent p.L20L 0.25 TCGA-S5-A6DX-01 8 86386038 86386038 G A CA2 Missense_Mutation p.E117K 0.22 deleterious(0) probably_damaging(0.985) TCGA-S5-A6DX-01 8 90777671 90777671 C T RIPK2 Missense_Mutation p.H144Y 0.27 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 8 99040030 99040030 G A MATN2 Missense_Mutation p.E777K 0.26 deleterious(0.02) possibly_damaging(0.804) TCGA-S5-A6DX-01 9 1055769 1055769 C G DMRT2 Intron 0.18 TCGA-S5-A6DX-01 9 130689458 130689458 G A PIP5KL1 Silent p.F208F 0.39 TCGA-S5-A6DX-01 9 136004549 136004549 G C RALGDS Missense_Mutation p.L53V 0.30 tolerated_low_confidence(0.47) benign(0.068) TCGA-S5-A6DX-01 9 137658893 137658893 C T COL5A1 Silent p.G727G 0.48 TCGA-S5-A6DX-01 9 139115682 139115682 G A QSOX2 Missense_Mutation p.S201F 0.36 deleterious(0) possibly_damaging(0.873) TCGA-S5-A6DX-01 9 140509653 140509653 C T ARRDC1 3'UTR 0.59 TCGA-S5-A6DX-01 9 15744360 15744360 C G CCDC171 Missense_Mutation p.F713L 0.32 tolerated(0.71) benign(0.005) TCGA-S5-A6DX-01 9 21216863 21216863 G C IFNA16 Missense_Mutation p.Q148E 0.33 tolerated(0.1) benign(0.054) TCGA-S5-A6DX-01 9 21333009 21333009 G C KLHL9 Missense_Mutation p.S617C 0.38 deleterious_low_confidence(0) unknown(0) TCGA-S5-A6DX-01 9 21455645 21455645 G A MIR31HG RNA 0.43 TCGA-S5-A6DX-01 9 21455894 21455894 G T MIR31HG RNA 0.30 TCGA-S5-A6DX-01 9 3293098 3293098 C T RFX3 Missense_Mutation p.R237Q 0.22 deleterious(0) probably_damaging(0.925) TCGA-S5-A6DX-01 9 34622033 34622033 G A ARID3C Silent p.N374N 0.36 TCGA-S5-A6DX-01 9 34623673 34623673 C G ARID3C Missense_Mutation p.R205P 0.40 deleterious(0) possibly_damaging(0.726) TCGA-S5-A6DX-01 9 35714609 35714609 G A TLN1 Nonsense_Mutation p.Q983* 0.48 TCGA-S5-A6DX-01 9 5922489 5922489 G A KIAA2026 Silent p.F1169F 0.35 TCGA-S5-A6DX-01 9 71865986 71865986 C A TJP2 Missense_Mutation p.F1040L 0.40 tolerated(0.59) benign(0.005) TCGA-S5-A6DX-01 9 77377849 77377849 G C TRPM6 Missense_Mutation p.C1246W 0.37 tolerated(0.1) benign(0.005) TCGA-S5-A6DX-01 9 77567328 77567328 G T C9orf40 Nonsense_Mutation p.S67* 0.27 TCGA-S5-A6DX-01 9 78686749 78686749 G A PCSK5 Missense_Mutation p.D277N 0.38 deleterious(0) probably_damaging(1) TCGA-S5-A6DX-01 9 79792546 79792546 G C VPS13A 5'UTR 0.27 TCGA-S5-A6DX-01 9 79934557 79934557 G T VPS13A Nonsense_Mutation p.E1795* 0.30 TCGA-S5-A6DX-01 9 84607132 84607132 C T SPATA31D1 Nonsense_Mutation p.Q583* 0.44 TCGA-S5-A6DX-01 9 88272535 88272535 C G AGTPBP1 Missense_Mutation p.D242H 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-S5-A6DX-01 9 91940549 91940549 G C SECISBP2 Missense_Mutation p.E130D 0.36 tolerated(0.1) benign(0.105) TCGA-S5-A6DX-01 9 95477402 95477402 G A BICD2 3'UTR 0.39 TCGA-S5-A6DX-01 9 95477526 95477526 G A BICD2 Silent p.H826H 0.38 TCGA-S5-A6DX-01 X 105921538 105921538 G C CXorf57 3'UTR 0.42 TCGA-S5-A6DX-01 X 106117133 106117133 G C TBC1D8B Missense_Mutation p.D1101H 0.36 deleterious(0.01) possibly_damaging(0.695) TCGA-S5-A6DX-01 X 107288384 107288384 C G VSIG1 Silent p.V8V 0.60 TCGA-S5-A6DX-01 X 122761692 122761692 G C THOC2 Missense_Mutation p.S870C 0.54 deleterious(0.01) possibly_damaging(0.474) TCGA-S5-A6DX-01 X 123657344 123657344 C T TENM1 Missense_Mutation p.R968K 0.40 tolerated(1) benign(0.046) TCGA-S5-A6DX-01 X 140985381 140985381 C A MAGEC3 Intron 0.43 TCGA-S5-A6DX-01 X 15320872 15320872 G A ASB11 Missense_Mutation p.A80V 0.35 deleterious(0.04) benign(0.012) TCGA-S5-A6DX-01 X 154280001 154280001 G A FUNDC2 Missense_Mutation p.M139I 0.45 tolerated(0.24) benign(0.081) TCGA-S5-A6DX-01 X 24006434 24006434 C G KLHL15 Missense_Mutation p.K473N 0.56 tolerated(0.39) possibly_damaging(0.71) TCGA-S5-A6DX-01 X 24006693 24006693 C G KLHL15 Missense_Mutation p.R387T 0.58 deleterious(0) possibly_damaging(0.877) TCGA-S5-A6DX-01 X 299510 299510 C G PPP2R3B Intron 0.24 TCGA-S5-A6DX-01 X 3235278 3235278 G A MXRA5 Silent p.I2148I 0.67 TCGA-S5-A6DX-01 X 32662373 32662374 CC A DMD Frame_Shift_Del p.L402Ffs*5 0.34 TCGA-S5-A6DX-01 X 37948763 37948763 C T SYTL5 Missense_Mutation p.R252W 0.32 tolerated(0.22) benign(0.001) TCGA-S5-A6DX-01 X 54472666 54472666 C T FGD1 Missense_Mutation p.R921Q 0.61 tolerated(0.08) possibly_damaging(0.461) TCGA-S5-A6DX-01 X 54951479 54951479 G C TRO Missense_Mutation p.R488P 0.43 deleterious(0) unknown(0) TCGA-S5-A6DX-01 X 68382895 68382895 G C PJA1 Missense_Mutation p.Q63E 0.61 tolerated(0.11) benign(0.08) TCGA-S5-A6DX-01 X 68383030 68383030 G A PJA1 Nonsense_Mutation p.Q18* 0.56 TCGA-S5-A6DX-01 X 69594084 69594084 G C KIF4A Missense_Mutation p.K586N 0.54 deleterious(0.05) probably_damaging(1) TCGA-S5-A6DX-01 X 7268271 7268271 G A STS Missense_Mutation p.R574K 0.56 tolerated(1) benign(0.001) TCGA-S5-A6DX-01 X 92964636 92964636 T A FAM133A Missense_Mutation p.L73H 0.34 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-S5-A6DX-01 X 99943237 99943237 G A SYTL4 Intron 0.29 TCGA-S5-AA26-01 10 102747262 102747262 G A MRPL43 5'UTR 0.36 TCGA-S5-AA26-01 10 104497439 104497439 C G SFXN2 Missense_Mutation p.L297V 0.57 deleterious(0.02) probably_damaging(0.999) TCGA-S5-AA26-01 10 121587072 121587072 C T INPP5F Missense_Mutation p.S1060L 0.50 deleterious_low_confidence(0) benign(0.097) TCGA-S5-AA26-01 10 124739927 124739927 C G PSTK 5'UTR 0.27 TCGA-S5-AA26-01 10 18828234 18828234 G A CACNB2 Missense_Mutation p.V522M 0.54 tolerated(0.11) benign(0.002) TCGA-S5-AA26-01 10 21120438 21120438 G A NEBL Silent p.V508V 0.32 TCGA-S5-AA26-01 10 31809830 31809830 G C ZEB1 Missense_Mutation p.E524Q 0.13 tolerated(0.16) benign(0.045) TCGA-S5-AA26-01 10 35467886 35467886 G C CREM Missense_Mutation p.E80Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-S5-AA26-01 10 3824250 3824250 C G KLF6 Missense_Mutation p.E87Q 0.48 tolerated(0.24) probably_damaging(0.968) TCGA-S5-AA26-01 10 409226 409226 G T DIP2C Missense_Mutation p.L835M 0.35 tolerated(0.06) probably_damaging(0.996) TCGA-S5-AA26-01 10 5791913 5791913 G C FAM208B Missense_Mutation p.V2177L 0.53 tolerated(0.24) benign(0.009) TCGA-S5-AA26-01 10 70719909 70719909 G A DDX21 Silent p.E145E 0.58 TCGA-S5-AA26-01 10 70738725 70738725 G A DDX21 Missense_Mutation p.G677E 0.39 deleterious(0.03) possibly_damaging(0.876) TCGA-S5-AA26-01 10 74619100 74619100 C T MCU Missense_Mutation p.S129L 0.53 deleterious(0) possibly_damaging(0.688) TCGA-S5-AA26-01 10 75283496 75283496 G A USP54 Missense_Mutation p.S736F 0.41 tolerated(0.16) benign(0.429) TCGA-S5-AA26-01 10 75671770 75671770 G A C10orf55 Silent p.I43I 0.50 TCGA-S5-AA26-01 10 8006054 8006054 G A TAF3 Missense_Mutation p.R194Q 0.45 deleterious(0) probably_damaging(0.986) TCGA-S5-AA26-01 10 88818977 88818977 C T GLUD1 Silent p.K444K 0.16 TCGA-S5-AA26-01 10 88819989 88819989 C T GLUD1 Missense_Mutation p.E403K 0.21 deleterious(0) probably_damaging(0.999) TCGA-S5-AA26-01 10 90661491 90661491 C G STAMBPL1 Missense_Mutation p.S9C 0.42 deleterious_low_confidence(0.01) benign(0.001) TCGA-S5-AA26-01 10 95517911 95517911 G C LGI1 Missense_Mutation p.E4Q 0.42 tolerated_low_confidence(0.27) benign(0.087) TCGA-S5-AA26-01 10 96117846 96117846 G A NOC3L Missense_Mutation p.S115F 0.41 deleterious(0) possibly_damaging(0.677) TCGA-S5-AA26-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.53 TCGA-S5-AA26-01 11 108151820 108151820 C T ATM Silent p.I1167I 0.55 TCGA-S5-AA26-01 11 108153497 108153497 C A ATM Missense_Mutation p.H1213N 0.40 deleterious(0) possibly_damaging(0.641) TCGA-S5-AA26-01 11 108202678 108202678 A G ATM Missense_Mutation p.R2568G 0.56 deleterious(0) benign(0.001) TCGA-S5-AA26-01 11 117077007 117077007 C G PCSK7 Missense_Mutation p.L688F 0.53 deleterious(0.03) benign(0.009) TCGA-S5-AA26-01 11 4608404 4608404 C G OR52I2 Nonsense_Mutation p.S121* 0.06 TCGA-S5-AA26-01 11 4843356 4843356 G A OR51F2 Silent p.E247E 0.94 TCGA-S5-AA26-01 11 55322565 55322565 C T OR4C15 Silent p.I261I 0.50 TCGA-S5-AA26-01 11 57235439 57235439 T C RTN4RL2 Missense_Mutation p.L130P 0.19 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 11 6048536 6048536 G C OR56A1 Missense_Mutation p.I133M 0.33 deleterious(0) probably_damaging(0.991) TCGA-S5-AA26-01 11 63996989 63996989 G C NUDT22 Silent p.L239L 0.44 TCGA-S5-AA26-01 11 64514129 64514129 G A PYGM 3'UTR 0.46 TCGA-S5-AA26-01 11 64989954 64989954 G C SLC22A20 RNA 0.50 TCGA-S5-AA26-01 11 65380753 65380753 C A MAP3K11 Nonsense_Mutation p.E159* 0.41 TCGA-S5-AA26-01 11 65380813 65380813 C T MAP3K11 Missense_Mutation p.E139K 0.50 deleterious(0.05) probably_damaging(0.973) TCGA-S5-AA26-01 11 65381077 65381077 C G MAP3K11 Missense_Mutation p.D51H 0.40 deleterious(0) probably_damaging(0.999) TCGA-S5-AA26-01 11 65653032 65653032 G A FIBP Silent p.L205L 0.35 TCGA-S5-AA26-01 11 67250649 67250649 G C AIP Missense_Mutation p.R7T 0.37 tolerated(0.56) benign(0.006) TCGA-S5-AA26-01 11 67250680 67250680 G A AIP Silent p.V17V 0.41 TCGA-S5-AA26-01 11 69518060 69518060 C G FGF19 Missense_Mutation p.C102S 0.04 deleterious(0.01) probably_damaging(1) TCGA-S5-AA26-01 11 75907749 75907749 T C WNT11 Missense_Mutation p.T33A 0.42 tolerated(0.79) benign(0.058) TCGA-S5-AA26-01 12 10525616 10525616 C T KLRK1 3'UTR 0.28 TCGA-S5-AA26-01 12 120637269 120637269 G A RPLP0 Missense_Mutation p.P25L 0.38 tolerated(0.2) benign(0.11) TCGA-S5-AA26-01 12 125509639 125509639 C T BRI3BP Missense_Mutation p.S140F 0.48 deleterious(0) probably_damaging(0.997) TCGA-S5-AA26-01 12 132472265 132472265 C T EP400 Nonsense_Mutation p.Q747* 0.46 TCGA-S5-AA26-01 12 132490704 132490704 C G EP400 Missense_Mutation p.L995V 0.07 unknown(0) TCGA-S5-AA26-01 12 24048873 24048873 C T SOX5 Missense_Mutation p.E42K 0.06 tolerated_low_confidence(0.14) benign(0.006) TCGA-S5-AA26-01 12 25261528 25261528 G C CASC1 Missense_Mutation p.S708C 0.57 tolerated(0.15) benign(0.063) TCGA-S5-AA26-01 12 49360196 49360196 G A WNT10B Silent p.F284F 0.44 TCGA-S5-AA26-01 12 49444501 49444501 A T KMT2D Nonsense_Mutation p.L957* 0.52 TCGA-S5-AA26-01 12 49446775 49446775 G C KMT2D Silent p.L345L 0.51 TCGA-S5-AA26-01 12 52585601 52585601 G A KRT80 Missense_Mutation p.S29L 0.45 tolerated(0.48) benign(0.008) TCGA-S5-AA26-01 12 62708610 62708610 G A USP15 Missense_Mutation p.E130K 0.43 deleterious(0) probably_damaging(0.979) TCGA-S5-AA26-01 12 69250206 69250206 C T CPM 3'UTR 0.37 TCGA-S5-AA26-01 12 75698550 75698550 G C CAPS2 Missense_Mutation p.L275V 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-S5-AA26-01 12 78334155 78334155 C G NAV3 Missense_Mutation p.I100M 0.42 deleterious(0) probably_damaging(0.999) TCGA-S5-AA26-01 12 8197368 8197368 G T FOXJ2 Missense_Mutation p.V211L 0.47 tolerated(0.25) possibly_damaging(0.891) TCGA-S5-AA26-01 12 9885672 9885672 G A CLECL1 Silent p.F63F 0.45 TCGA-S5-AA26-01 13 20240702 20240702 G A MPHOSPH8 Silent p.L719L 0.40 TCGA-S5-AA26-01 13 20660162 20660162 C T ZMYM2 3'UTR 0.37 TCGA-S5-AA26-01 13 26273332 26273332 C T ATP8A2 Nonsense_Mutation p.Q745* 0.51 TCGA-S5-AA26-01 13 45553354 45553354 T G NUFIP1 Missense_Mutation p.E235D 0.90 tolerated(0.17) benign(0.207) TCGA-S5-AA26-01 13 58207726 58207726 C T PCDH17 Missense_Mutation p.P349L 0.89 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 13 75869116 75869116 C G TBC1D4 Missense_Mutation p.D1064H 0.40 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 14 102348558 102348558 G A PPP2R5C Missense_Mutation p.D150N 0.23 deleterious(0) probably_damaging(0.974) TCGA-S5-AA26-01 14 103410617 103410617 G C CDC42BPB Missense_Mutation p.S1340C 0.49 tolerated(0.05) possibly_damaging(0.676) TCGA-S5-AA26-01 14 106518453 106518453 G A IGHV3-7 Silent p.L100L 0.04 TCGA-S5-AA26-01 14 106573286 106573286 G A IGHV3-11 Silent p.L100L 0.21 TCGA-S5-AA26-01 14 106993867 106993867 G A IGHV3-48 Silent p.L100L 0.07 TCGA-S5-AA26-01 14 21969985 21969985 C T METTL3 Missense_Mutation p.E262K 0.28 tolerated(0.09) benign(0.403) TCGA-S5-AA26-01 14 38064103 38064103 C T FOXA1 Intron 0.60 TCGA-S5-AA26-01 14 68215094 68215094 C T ZFYVE26 3'UTR 0.40 TCGA-S5-AA26-01 14 68215100 68215100 C T ZFYVE26 3'UTR 0.40 TCGA-S5-AA26-01 14 68215296 68215296 C G ZFYVE26 Missense_Mutation p.E2493Q 0.39 deleterious(0) probably_damaging(0.983) TCGA-S5-AA26-01 14 76349136 76349136 C G TTLL5 Missense_Mutation p.L1211V 0.20 deleterious_low_confidence(0.03) benign(0.126) TCGA-S5-AA26-01 14 78174278 78174278 G T ALKBH1 Silent p.R24R 0.43 TCGA-S5-AA26-01 15 34649187 34649187 C T NUTM1 Missense_Mutation p.S965F 0.41 deleterious(0.01) benign(0.016) TCGA-S5-AA26-01 15 35275196 35275196 G T ZNF770 Missense_Mutation p.S147Y 0.43 deleterious(0.01) possibly_damaging(0.867) TCGA-S5-AA26-01 15 42749375 42749375 G A ZNF106 Missense_Mutation p.S10L 0.43 deleterious_low_confidence(0.05) possibly_damaging(0.879) TCGA-S5-AA26-01 15 64966956 64966956 G C ZNF609 Missense_Mutation p.E635Q 0.48 tolerated(0.06) benign(0.124) TCGA-S5-AA26-01 15 72338677 72338677 G A MYO9A Silent p.L76L 0.51 TCGA-S5-AA26-01 15 75189514 75189514 C T MPI Missense_Mutation p.S336L 0.25 tolerated(0.65) benign(0.001) TCGA-S5-AA26-01 15 84286884 84286884 G C SH3GL3 Missense_Mutation p.E297Q 0.05 deleterious(0.04) possibly_damaging(0.903) TCGA-S5-AA26-01 15 86311544 86311544 C G KLHL25 Missense_Mutation p.D500H 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-S5-AA26-01 15 89398622 89398622 G A ACAN Missense_Mutation p.E936K 0.52 tolerated(1) benign(0.014) TCGA-S5-AA26-01 15 89402203 89402203 G C ACAN Silent p.L2129L 0.52 TCGA-S5-AA26-01 15 89402324 89402324 G C ACAN Missense_Mutation p.E2170Q 0.45 deleterious(0.01) possibly_damaging(0.475) TCGA-S5-AA26-01 16 2296929 2296929 C T ECI1 Silent p.L75L 0.44 TCGA-S5-AA26-01 16 24373076 24373076 C G CACNG3 Silent p.L280L 0.40 TCGA-S5-AA26-01 16 2835930 2835930 C T PRSS33 Missense_Mutation p.V38I 0.59 deleterious(0.02) probably_damaging(0.917) TCGA-S5-AA26-01 16 29913153 29913153 C G ASPHD1 Missense_Mutation p.F287L 0.38 tolerated(0.11) possibly_damaging(0.669) TCGA-S5-AA26-01 16 30387805 30387805 C G MYLPF Missense_Mutation p.I78M 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-S5-AA26-01 16 30387975 30387975 C A MYLPF Missense_Mutation p.F104L 0.56 deleterious(0) benign(0.005) TCGA-S5-AA26-01 16 4930262 4930262 G T UBN1 3'UTR 0.31 TCGA-S5-AA26-01 16 50346848 50346848 C T ADCY7 Silent p.S884S 0.45 TCGA-S5-AA26-01 16 5134735 5134735 C G FAM86A 3'UTR 0.48 TCGA-S5-AA26-01 16 53337976 53337976 C G CHD9 Missense_Mutation p.Q2020E 0.27 possibly_damaging(0.467) TCGA-S5-AA26-01 16 54965166 54965166 C T IRX5 Missense_Mutation p.S19L 0.30 deleterious(0.05) benign(0.064) TCGA-S5-AA26-01 16 74425575 74425575 C G NPIPB15 Missense_Mutation p.P310R 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-S5-AA26-01 16 81390451 81390451 G A GAN Missense_Mutation p.R232Q 0.49 tolerated(0.24) benign(0.063) TCGA-S5-AA26-01 16 85687988 85687988 C T GSE1 Silent p.L177L 0.60 TCGA-S5-AA26-01 16 89650455 89650455 C T CPNE7 Missense_Mutation p.S226L 0.39 deleterious(0.05) benign(0.189) TCGA-S5-AA26-01 16 89805249 89805249 C T FANCA Intron 0.44 TCGA-S5-AA26-01 16 89805279 89805279 C G FANCA Intron 0.44 TCGA-S5-AA26-01 16 89806408 89806408 C T FANCA Missense_Mutation p.E1310K 0.42 tolerated(0.09) possibly_damaging(0.621) TCGA-S5-AA26-01 17 12032540 12032540 C G MAP2K4 Missense_Mutation p.P326A 0.49 deleterious(0) possibly_damaging(0.759) TCGA-S5-AA26-01 17 1633731 1633731 C G WDR81 Missense_Mutation p.S1242C 0.29 deleterious(0.03) probably_damaging(1) TCGA-S5-AA26-01 17 19314761 19314761 C G RNF112 Missense_Mutation p.R14G 0.31 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-S5-AA26-01 17 21208407 21208407 C G MAP2K3 Silent p.V247V 0.20 TCGA-S5-AA26-01 17 27383341 27383341 C T PIPOX 3'UTR 0.32 TCGA-S5-AA26-01 17 27944540 27944540 C T CORO6 Missense_Mutation p.R244Q 0.18 deleterious(0) probably_damaging(0.994) TCGA-S5-AA26-01 17 34072004 34072004 C G GAS2L2 Missense_Mutation p.E838Q 0.62 tolerated(0.17) benign(0.024) TCGA-S5-AA26-01 17 48183423 48183423 C G PDK2 Missense_Mutation p.I169M 0.44 tolerated(0.15) benign(0.22) TCGA-S5-AA26-01 17 48685346 48685346 G C CACNA1G Missense_Mutation p.E1557D 0.12 deleterious(0.02) possibly_damaging(0.573) TCGA-S5-AA26-01 17 5352147 5352147 C G DHX33 Silent p.L599L 0.45 TCGA-S5-AA26-01 17 65907303 65907304 TC - BPTF Frame_Shift_Del p.S1103* 0.19 TCGA-S5-AA26-01 17 72709035 72709035 C T CD300LF 5'UTR 0.47 TCGA-S5-AA26-01 17 72842932 72842932 G A GRIN2C Missense_Mutation p.S710L 0.31 deleterious(0) possibly_damaging(0.903) TCGA-S5-AA26-01 17 73239148 73239148 G C GGA3 Missense_Mutation p.S175C 0.41 deleterious(0) probably_damaging(0.976) TCGA-S5-AA26-01 17 73509963 73509963 C T CASKIN2 5'UTR 0.44 TCGA-S5-AA26-01 17 74073146 74073146 C T GALR2 Silent p.L266L 0.34 TCGA-S5-AA26-01 17 80724146 80724146 C G TBCD Missense_Mutation p.R113G 0.53 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 18 10697783 10697783 C T PIEZO2 Missense_Mutation p.E2151K 0.50 tolerated(0.1) benign(0.06) TCGA-S5-AA26-01 18 2578006 2578006 G C NDC80 Missense_Mutation p.M114I 0.45 tolerated(0.25) benign(0.003) TCGA-S5-AA26-01 18 55282956 55282956 C G NARS Missense_Mutation p.D87H 0.42 deleterious(0.01) possibly_damaging(0.764) TCGA-S5-AA26-01 18 55283097 55283097 C G NARS Missense_Mutation p.K68N 0.41 tolerated(0.1) possibly_damaging(0.77) TCGA-S5-AA26-01 18 74696844 74696844 C T RP11-862L9.3 3'Flank 0.42 TCGA-S5-AA26-01 19 10084626 10084626 G T COL5A3 Missense_Mutation p.P1176H 0.51 probably_damaging(0.998) TCGA-S5-AA26-01 19 11348134 11348134 C T DOCK6 Missense_Mutation p.D691N 0.47 tolerated(0.21) probably_damaging(0.969) TCGA-S5-AA26-01 19 12946036 12946036 G C RTBDN 5'UTR 0.50 TCGA-S5-AA26-01 19 14208239 14208239 G T PRKACA Silent p.A233A 0.43 TCGA-S5-AA26-01 19 16633941 16633941 G C CHERP Missense_Mutation p.I634M 0.45 tolerated(0.07) benign(0.008) TCGA-S5-AA26-01 19 35230481 35230481 G C ZNF181 Missense_Mutation p.E62Q 0.43 deleterious(0.03) probably_damaging(0.968) TCGA-S5-AA26-01 19 35850799 35850799 G A FFAR3 Missense_Mutation p.G336E 0.25 deleterious_low_confidence(0.01) benign(0.104) TCGA-S5-AA26-01 19 39735575 39735575 C T IFNL3 Silent p.L11L 0.21 TCGA-S5-AA26-01 19 41119318 41119318 G A LTBP4 Missense_Mutation p.E881K 0.63 tolerated(0.07) probably_damaging(0.999) TCGA-S5-AA26-01 19 41271007 41271007 G A SNRPA Missense_Mutation p.D262N 0.16 tolerated(0.19) benign(0.396) TCGA-S5-AA26-01 19 42301715 42301715 C G CEACAM3 Missense_Mutation p.Q87E 0.65 tolerated(0.09) benign(0.282) TCGA-S5-AA26-01 19 4332029 4332029 G A STAP2 Missense_Mutation p.T115M 0.50 deleterious(0.02) possibly_damaging(0.597) TCGA-S5-AA26-01 19 46313980 46313980 C G RSPH6A Missense_Mutation p.D257H 0.66 deleterious(0) possibly_damaging(0.7) TCGA-S5-AA26-01 19 48282063 48282063 C G SEPW1 Silent p.V7V 0.62 TCGA-S5-AA26-01 19 50214050 50214050 C T CPT1C Missense_Mutation p.T601M 0.27 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 19 51918503 51918503 C G SIGLEC10 Missense_Mutation p.G421A 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-S5-AA26-01 19 53384382 53384382 C T ZNF320 Missense_Mutation p.E333K 0.22 deleterious(0.04) possibly_damaging(0.69) TCGA-S5-AA26-01 19 54744189 54744189 G T LILRA6 Missense_Mutation p.L407M 0.07 deleterious(0) probably_damaging(0.994) TCGA-S5-AA26-01 19 55593204 55593204 G C EPS8L1 Missense_Mutation p.E280Q 0.63 tolerated(0.05) probably_damaging(0.998) TCGA-S5-AA26-01 19 58152612 58152612 G A ZNF211 Missense_Mutation p.R318K 0.05 tolerated(0.8) benign(0.014) TCGA-S5-AA26-01 19 58353095 58353095 G C ZNF587B Missense_Mutation p.E351D 0.41 deleterious(0.02) benign(0.35) TCGA-S5-AA26-01 19 5866949 5866949 G C FUT5 Missense_Mutation p.S263C 0.47 deleterious(0) probably_damaging(0.998) TCGA-S5-AA26-01 19 58807028 58807028 G C ZNF8 3'UTR 0.15 TCGA-S5-AA26-01 19 58850653 58850653 G C ZSCAN22 Silent p.L479L 0.33 TCGA-S5-AA26-01 19 6680264 6680264 G C C3 Missense_Mutation p.S1454C 0.44 deleterious(0.03) possibly_damaging(0.734) TCGA-S5-AA26-01 19 8196695 8196695 G A FBN3 Missense_Mutation p.T578M 0.67 deleterious(0.02) benign(0.21) TCGA-S5-AA26-01 19 8206643 8206643 G C FBN3 Missense_Mutation p.P275A 0.40 deleterious(0.01) probably_damaging(0.923) TCGA-S5-AA26-01 1 110050374 110050374 G A AMIGO1 Silent p.V387V 0.45 TCGA-S5-AA26-01 1 112524512 112524512 G A KCND3 Silent p.N279N 0.45 TCGA-S5-AA26-01 1 114438528 114438528 G A AP4B1 Missense_Mutation p.P548L 0.41 tolerated(0.36) benign(0) TCGA-S5-AA26-01 1 12639404 12639404 C G DHRS3 Missense_Mutation p.V126L 0.42 deleterious(0.01) probably_damaging(0.952) TCGA-S5-AA26-01 1 145509220 145509220 C T RBM8A 3'UTR 0.35 TCGA-S5-AA26-01 1 149857758 149857758 G C HIST2H2BE 3'UTR 0.23 TCGA-S5-AA26-01 1 153930853 153930853 C G CRTC2 Missense_Mutation p.E41Q 0.73 tolerated(0.16) possibly_damaging(0.529) TCGA-S5-AA26-01 1 154988787 154988787 G C ZBTB7B Missense_Mutation p.D450H 0.26 deleterious(0) probably_damaging(0.998) TCGA-S5-AA26-01 1 155429593 155429593 G A ASH1L Missense_Mutation p.S1694L 0.29 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-S5-AA26-01 1 160054166 160054166 G A KCNJ9 Missense_Mutation p.E116K 0.59 deleterious(0.01) probably_damaging(1) TCGA-S5-AA26-01 1 16269033 16269033 G A ZBTB17 Nonsense_Mutation p.Q677* 0.45 TCGA-S5-AA26-01 1 169698400 169698400 G C SELE Missense_Mutation p.F339L 0.26 deleterious(0) possibly_damaging(0.902) TCGA-S5-AA26-01 1 169822843 169822843 C G C1orf112 3'UTR 0.27 TCGA-S5-AA26-01 1 176740227 176740227 C G PAPPA2 Silent p.L1542L 0.14 TCGA-S5-AA26-01 1 180832932 180832932 C G XPR1 Silent p.L530L 0.27 TCGA-S5-AA26-01 1 183520300 183520300 C G SMG7 Missense_Mutation p.S1096C 0.28 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-S5-AA26-01 1 205555251 205555251 C G MFSD4 Missense_Mutation p.F355L 0.95 deleterious(0) probably_damaging(0.999) TCGA-S5-AA26-01 1 210012395 210012395 G A DIEXF Missense_Mutation p.E402K 0.46 tolerated(0.31) benign(0.102) TCGA-S5-AA26-01 1 228111900 228111900 C T WNT9A Missense_Mutation p.R185K 0.92 tolerated(1) benign(0.005) TCGA-S5-AA26-01 1 228879263 228879263 G A RHOU Missense_Mutation p.E185K 0.42 tolerated(0.28) benign(0.19) TCGA-S5-AA26-01 1 235956879 235956879 G C LYST Missense_Mutation p.S1347C 0.44 tolerated(0.21) probably_damaging(0.921) TCGA-S5-AA26-01 1 236746460 236746460 C G HEATR1 Missense_Mutation p.D760H 0.96 deleterious(0.03) benign(0.438) TCGA-S5-AA26-01 1 242042605 242042605 C G EXO1 Nonsense_Mutation p.S690* 0.67 TCGA-S5-AA26-01 1 245704078 245704078 G T KIF26B Missense_Mutation p.Q392H 0.61 deleterious(0.03) unknown(0) TCGA-S5-AA26-01 1 248512294 248512294 C G OR14C36 Missense_Mutation p.S73C 0.61 deleterious(0) probably_damaging(0.977) TCGA-S5-AA26-01 1 35470789 35470789 G C ZMYM6 Nonsense_Mutation p.S633* 0.40 TCGA-S5-AA26-01 1 43032078 43032078 C T CCDC30 Nonsense_Mutation p.R263* 0.49 TCGA-S5-AA26-01 1 43770699 43770699 G A TIE1 Missense_Mutation p.R79H 0.60 tolerated(0.45) benign(0) TCGA-S5-AA26-01 1 61818207 61818207 G C NFIA Missense_Mutation p.M307I 0.41 deleterious(0.04) benign(0.103) TCGA-S5-AA26-01 1 65335121 65335121 G A JAK1 Nonsense_Mutation p.R174* 0.91 TCGA-S5-AA26-01 1 65691751 65691751 G A AK4 Missense_Mutation p.R188Q 0.45 tolerated(0.16) benign(0.003) TCGA-S5-AA26-01 1 67592927 67592927 C T C1orf141 5'UTR 0.45 TCGA-S5-AA26-01 1 8029462 8029462 G A PARK7 Missense_Mutation p.E84K 0.43 tolerated(0.44) benign(0.006) TCGA-S5-AA26-01 20 23066384 23066384 G C CD93 Missense_Mutation p.S149C 0.31 deleterious(0) probably_damaging(0.983) TCGA-S5-AA26-01 20 271016 271016 G A C20orf96 Intron 0.53 TCGA-S5-AA26-01 20 35944882 35944882 C T MANBAL 3'UTR 0.41 TCGA-S5-AA26-01 20 36470803 36470803 G C CTNNBL1 Missense_Mutation p.K458N 0.45 tolerated(0.1) benign(0.203) TCGA-S5-AA26-01 20 45797818 45797818 C G EYA2 Nonsense_Mutation p.S337* 0.38 TCGA-S5-AA26-01 20 49575736 49575736 G A MOCS3 Missense_Mutation p.M119I 0.10 tolerated(0.44) benign(0) TCGA-S5-AA26-01 20 60907624 60907624 G A LAMA5 Silent p.P1144P 0.50 TCGA-S5-AA26-01 21 37571393 37571393 C G DOPEY2 Missense_Mutation p.S55C 0.46 deleterious(0.03) benign(0.208) TCGA-S5-AA26-01 21 38528993 38528993 G T TTC3 Missense_Mutation p.G926V 0.39 deleterious(0) possibly_damaging(0.659) TCGA-S5-AA26-01 21 40777878 40777878 G C LCA5L Missense_Mutation p.S648C 0.56 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 21 43645851 43645851 C T ABCG1 Missense_Mutation p.S38F 0.44 tolerated_low_confidence(0.28) benign(0.004) TCGA-S5-AA26-01 22 26862217 26862217 C T HPS4 Silent p.T227T 0.29 TCGA-S5-AA26-01 22 30730398 30730398 C G SF3A1 3'UTR 0.67 TCGA-S5-AA26-01 22 30733138 30733138 G T SF3A1 Silent p.V661V 0.56 TCGA-S5-AA26-01 22 32831828 32831829 - G BPIFC Frame_Shift_Ins p.F263Lfs*26 0.40 TCGA-S5-AA26-01 22 37915040 37915040 G T CARD10 Silent p.V56V 0.33 TCGA-S5-AA26-01 2 11728910 11728910 G T GREB1 Missense_Mutation p.D400Y 0.97 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 2 11959632 11959632 G C LPIN1 Missense_Mutation p.E858Q 0.91 deleterious(0) probably_damaging(0.997) TCGA-S5-AA26-01 2 1652185 1652185 C T PXDN Missense_Mutation p.G1123R 1.00 deleterious(0) probably_damaging(0.995) TCGA-S5-AA26-01 2 165986710 165986710 C G SCN3A Missense_Mutation p.V888L 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-S5-AA26-01 2 178416281 178416281 C G TTC30B Missense_Mutation p.R404T 0.90 tolerated(0.27) benign(0.112) TCGA-S5-AA26-01 2 178417480 178417480 C G TTC30B Silent p.L4L 0.26 TCGA-S5-AA26-01 2 223158459 223158459 C T PAX3 Intron 0.96 TCGA-S5-AA26-01 2 233633050 233633050 G C KCNJ13 Missense_Mutation p.Q312E 0.89 tolerated(0.5) benign(0.035) TCGA-S5-AA26-01 2 25978949 25978949 G C ASXL2 Nonsense_Mutation p.S325* 0.07 TCGA-S5-AA26-01 2 29355041 29355041 G C CLIP4 Silent p.V99V 0.91 TCGA-S5-AA26-01 2 55529049 55529049 G A CCDC88A Missense_Mutation p.S1543F 0.84 deleterious(0) probably_damaging(0.921) TCGA-S5-AA26-01 3 100174618 100174618 C T LNP1 Intron 0.43 TCGA-S5-AA26-01 3 113374159 113374159 C T KIAA2018 Missense_Mutation p.D2124N 0.36 probably_damaging(0.998) TCGA-S5-AA26-01 3 118647477 118647477 G T IGSF11 Silent p.T101T 0.52 TCGA-S5-AA26-01 3 121206680 121206680 C G POLQ Missense_Mutation p.E1700Q 0.49 tolerated(0.21) benign(0.017) TCGA-S5-AA26-01 3 13545983 13545983 G C HDAC11 Missense_Mutation p.D282H 0.29 deleterious(0) probably_damaging(1) TCGA-S5-AA26-01 3 15303698 15303698 C T SH3BP5 Silent p.E198E 0.41 TCGA-S5-AA26-01 3 191861850 191861850 G C FGF12 Missense_Mutation p.S227C 0.49 deleterious(0) possibly_damaging(0.827) TCGA-S5-AA26-01 3 194150428 194150428 G A ATP13A3 Silent p.F951F 0.41 TCGA-S5-AA26-01 3 196669415 196669415 G C NCBP2 5'UTR 0.40 TCGA-S5-AA26-01 3 3067947 3067947 G C CNTN4 Missense_Mutation p.E550Q 0.54 deleterious(0.04) probably_damaging(0.998) TCGA-S5-AA26-01 3 37376628 37376628 G A GOLGA4 Missense_Mutation p.E2115K 0.40 benign(0.138) TCGA-S5-AA26-01 3 48628141 48628141 C A COL7A1 Missense_Mutation p.R582L 0.44 unknown(0) TCGA-S5-AA26-01 3 49211740 49211740 G A KLHDC8B Missense_Mutation p.E149K 0.47 deleterious(0.01) possibly_damaging(0.829) TCGA-S5-AA26-01 3 49281838 49281838 G C CCDC36 Missense_Mutation p.E133Q 0.07 deleterious(0.03) probably_damaging(0.977) TCGA-S5-AA26-01 3 49701286 49701286 C G BSN Missense_Mutation p.Q3859E 0.40 possibly_damaging(0.585) TCGA-S5-AA26-01 3 49927360 49927360 G A MST1R Missense_Mutation p.S1315F 0.15 deleterious(0.03) possibly_damaging(0.653) TCGA-S5-AA26-01 3 50151425 50151425 C T RBM5 Nonsense_Mutation p.Q554* 0.50 TCGA-S5-AA26-01 3 9106158 9106158 G T SRGAP3 Silent p.L198L 0.42 TCGA-S5-AA26-01 3 9106168 9106168 G A SRGAP3 Missense_Mutation p.S195L 0.41 deleterious(0) benign(0.03) TCGA-S5-AA26-01 4 110908959 110908959 G C EGF Missense_Mutation p.E851Q 0.36 tolerated(0.15) benign(0.128) TCGA-S5-AA26-01 4 128819671 128819671 C G PLK4 Missense_Mutation p.S963C 0.40 deleterious(0.01) possibly_damaging(0.823) TCGA-S5-AA26-01 4 152024253 152024253 C G RPS3A Intron 0.29 TCGA-S5-AA26-01 4 15964575 15964575 G A FGFBP2 Missense_Mutation p.R60C 0.84 deleterious(0) possibly_damaging(0.824) TCGA-S5-AA26-01 4 177093648 177093648 T G WDR17 Missense_Mutation p.I1114M 0.47 tolerated(0.21) possibly_damaging(0.522) TCGA-S5-AA26-01 4 187554879 187554880 - GA FAT1 Frame_Shift_Ins p.T1428Sfs*20 0.30 TCGA-S5-AA26-01 4 24875309 24875309 C G CCDC149 Missense_Mutation p.R86S 0.71 tolerated(0.16) possibly_damaging(0.544) TCGA-S5-AA26-01 4 71509912 71509912 C G ENAM Missense_Mutation p.I923M 0.47 deleterious(0.01) possibly_damaging(0.897) TCGA-S5-AA26-01 4 83765504 83765504 C G SEC31A Intron 0.44 TCGA-S5-AA26-01 4 88983152 88983152 G A PKD2 Missense_Mutation p.R705K 0.29 tolerated(1) benign(0.003) TCGA-S5-AA26-01 5 10236713 10236713 C T FAM173B Silent p.A107A 0.42 TCGA-S5-AA26-01 5 122152657 122152657 G C SNX2 Missense_Mutation p.L282F 0.50 tolerated(0.07) probably_damaging(0.98) TCGA-S5-AA26-01 5 127624927 127624927 C G FBN2 Missense_Mutation p.E2177Q 0.44 tolerated(0.15) probably_damaging(0.93) TCGA-S5-AA26-01 5 132216777 132216777 G A AFF4 Missense_Mutation p.R1156C 0.50 deleterious(0) probably_damaging(0.995) TCGA-S5-AA26-01 5 140250983 140250983 G A PCDHA11 Silent p.K765K 0.52 TCGA-S5-AA26-01 5 140530815 140530815 C T PCDHB6 Missense_Mutation p.S326L 0.43 deleterious(0.01) benign(0.061) TCGA-S5-AA26-01 5 140589928 140589928 C T PCDHB12 Silent p.N483N 0.44 TCGA-S5-AA26-01 5 140594246 140594246 G A PCDHB13 Missense_Mutation p.R184H 0.47 tolerated_low_confidence(0.39) benign(0.005) TCGA-S5-AA26-01 5 149907591 149907591 G C NDST1 Missense_Mutation p.E247Q 0.42 tolerated(0.14) probably_damaging(0.982) TCGA-S5-AA26-01 5 176295922 176295922 C T UNC5A Silent p.I226I 0.44 TCGA-S5-AA26-01 5 179290559 179290559 C T TBC1D9B Silent p.V1214V 0.38 TCGA-S5-AA26-01 5 180665127 180665127 G C GNB2L1 Missense_Mutation p.A250G 0.50 deleterious(0.03) possibly_damaging(0.677) TCGA-S5-AA26-01 5 19473215 19473215 G C CDH18 3'UTR 0.50 TCGA-S5-AA26-01 5 37329339 37329339 G A NUP155 Missense_Mutation p.P589L 0.52 tolerated(0.19) possibly_damaging(0.477) TCGA-S5-AA26-01 5 39383232 39383232 C G DAB2 Missense_Mutation p.E277Q 0.43 deleterious(0.02) probably_damaging(0.921) TCGA-S5-AA26-01 5 56558674 56558674 G A GPBP1 3'UTR 0.41 TCGA-S5-AA26-01 5 60188263 60188263 G A ERCC8 Intron 0.31 TCGA-S5-AA26-01 5 6751282 6751282 G T PAPD7 Missense_Mutation p.R414I 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.635) TCGA-S5-AA26-01 5 75927747 75927747 C T IQGAP2 Missense_Mutation p.S559F 0.49 deleterious(0.02) benign(0.14) TCGA-S5-AA26-01 6 136597369 136597369 C G BCLAF1 Missense_Mutation p.E432Q 0.09 deleterious(0.01) possibly_damaging(0.607) TCGA-S5-AA26-01 6 150291163 150291163 C G ULBP1 Missense_Mutation p.L213V 0.53 tolerated(1) benign(0.001) TCGA-S5-AA26-01 6 25916039 25916039 C T SLC17A2 Missense_Mutation p.G330S 0.42 deleterious(0.02) probably_damaging(0.919) TCGA-S5-AA26-01 6 25917064 25917064 G A SLC17A2 Missense_Mutation p.P260L 0.41 deleterious(0.04) benign(0.138) TCGA-S5-AA26-01 6 28554483 28554483 G C SCAND3 Silent p.V4V 0.35 TCGA-S5-AA26-01 6 30880886 30880886 G C GTF2H4 Splice_Site p.X364_splice 0.53 TCGA-S5-AA26-01 6 31544995 31544995 C G TNF Nonsense_Mutation p.S128* 0.48 TCGA-S5-AA26-01 6 33383614 33383614 C T PHF1 Silent p.F481F 0.43 TCGA-S5-AA26-01 6 33383673 33383673 C T PHF1 Missense_Mutation p.S501L 0.43 tolerated(0.3) benign(0.001) TCGA-S5-AA26-01 6 42854069 42854069 C T RPL7L1 Missense_Mutation p.S203L 0.54 tolerated(0.13) benign(0.005) TCGA-S5-AA26-01 6 43126678 43126678 C G PTK7 Missense_Mutation p.L957V 0.47 tolerated(0.06) probably_damaging(0.997) TCGA-S5-AA26-01 6 43267169 43267169 G A SLC22A7 Silent p.A147A 0.47 TCGA-S5-AA26-01 6 44222632 44222632 G A SLC35B2 Silent p.I370I 0.45 TCGA-S5-AA26-01 6 46605606 46605606 C G CYP39A1 Missense_Mutation p.D200H 0.57 deleterious(0.01) possibly_damaging(0.897) TCGA-S5-AA26-01 6 6318796 6318796 G T F13A1 Silent p.G34G 0.47 TCGA-S5-AA26-01 6 70917091 70917091 T G COL19A1 3'UTR 0.24 TCGA-S5-AA26-01 6 83810490 83810490 C A DOPEY1 Missense_Mutation p.Q69K 0.45 deleterious(0) probably_damaging(0.996) TCGA-S5-AA26-01 7 138262239 138262239 G A TRIM24 Missense_Mutation p.R721Q 0.46 deleterious(0.02) possibly_damaging(0.86) TCGA-S5-AA26-01 7 146471409 146471409 C A CNTNAP2 Missense_Mutation p.F48L 0.37 deleterious(0) benign(0.002) TCGA-S5-AA26-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.29 tolerated(0.1) benign(0.189) TCGA-S5-AA26-01 7 44012806 44012806 C T POLR2J4 Intron 0.73 TCGA-S5-AA26-01 7 4874788 4874788 G A RADIL Missense_Mutation p.S289L 0.40 tolerated(0.24) benign(0.18) TCGA-S5-AA26-01 7 5781266 5781266 C G RNF216 Missense_Mutation p.E128Q 0.50 tolerated_low_confidence(0.14) probably_damaging(0.999) TCGA-S5-AA26-01 7 94913496 94913496 G C PPP1R9A Missense_Mutation p.E1155Q 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-S5-AA26-01 8 108264046 108264046 C G ANGPT1 3'UTR 0.05 TCGA-S5-AA26-01 8 113314064 113314064 G T CSMD3 Missense_Mutation p.L2800I 0.42 deleterious(0.03) possibly_damaging(0.595) TCGA-S5-AA26-01 8 1872040 1872040 G A ARHGEF10 Missense_Mutation p.E830K 0.51 tolerated(0.13) possibly_damaging(0.557) TCGA-S5-AA26-01 8 3165880 3165880 C G CSMD1 Missense_Mutation p.L1259F 0.39 possibly_damaging(0.888) TCGA-S5-AA26-01 8 33369967 33369967 G T TTI2 Silent p.L55L 0.40 TCGA-S5-AA26-01 8 41122737 41122737 C T SFRP1 Missense_Mutation p.M298I 0.51 tolerated(0.63) benign(0.008) TCGA-S5-AA26-01 8 48866272 48866272 G A PRKDC Missense_Mutation p.S210L 0.48 benign(0.114) TCGA-S5-AA26-01 8 91094857 91094857 G C CALB1 Missense_Mutation p.F23L 0.47 deleterious(0.01) benign(0.01) TCGA-S5-AA26-01 9 100308621 100308621 G C TMOD1 Missense_Mutation p.R92P 0.93 deleterious(0) possibly_damaging(0.867) TCGA-S5-AA26-01 9 114305209 114305209 G A ZNF483 Missense_Mutation p.C665Y 0.85 deleterious(0) possibly_damaging(0.86) TCGA-S5-AA26-01 9 125487095 125487095 C A OR1L4 Missense_Mutation p.T276K 0.93 deleterious(0) probably_damaging(0.999) TCGA-S5-AA26-01 9 135739089 135739089 G A AK8 Missense_Mutation p.T99M 0.24 deleterious(0.02) benign(0.008) TCGA-S5-AA26-01 9 139345835 139345835 G A SEC16A Missense_Mutation p.S2062L 1.00 tolerated(0.2) benign(0.003) TCGA-S5-AA26-01 9 139734253 139734253 G A RABL6 Silent p.K623K 0.92 TCGA-S5-AA26-01 9 2645003 2645003 C G VLDLR Missense_Mutation p.I411M 0.89 deleterious(0.01) probably_damaging(0.965) TCGA-S5-AA26-01 9 33796800 33796800 C T PRSS3 Missense_Mutation p.T124I 0.65 deleterious(0.01) possibly_damaging(0.485) TCGA-S5-AA26-01 X 24759500 24759500 C G POLA1 Missense_Mutation p.S736C 1.00 deleterious(0.05) possibly_damaging(0.571) TCGA-S5-AA26-01 X 26212948 26212948 C A MAGEB6 Silent p.R329R 0.93 TCGA-S5-AA26-01 X 75004061 75004061 C T MAGEE2 Missense_Mutation p.E276K 1.00 tolerated(1) benign(0.129) TCGA-SY-A9G0-01 10 123239508 123239508 C T FGFR2 Missense_Mutation p.E778K 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-SY-A9G0-01 10 26534903 26534903 C T GAD2 Silent p.S298S 0.06 TCGA-SY-A9G0-01 10 62645942 62645942 C T RHOBTB1 Silent p.P501P 0.07 TCGA-SY-A9G0-01 10 71026409 71026409 C T HKDC1 Nonsense_Mutation p.R884* 0.07 TCGA-SY-A9G0-01 10 72631732 72631732 G A SGPL1 Missense_Mutation p.D350N 0.06 deleterious(0) probably_damaging(1) TCGA-SY-A9G0-01 11 102207769 102207769 C G BIRC3 Missense_Mutation p.S584C 0.07 deleterious(0) probably_damaging(0.982) TCGA-SY-A9G0-01 11 51515722 51515722 G A OR4C46 Nonsense_Mutation p.W147* 0.17 TCGA-SY-A9G0-01 11 73809142 73809142 C G C2CD3 Missense_Mutation p.R964T 0.08 deleterious(0) probably_damaging(0.984) TCGA-SY-A9G0-01 12 18544155 18544155 G T PIK3C2G Missense_Mutation p.A658S 0.09 tolerated(0.22) benign(0.052) TCGA-SY-A9G0-01 13 51825659 51825659 C T FAM124A Silent p.I88I 0.14 TCGA-SY-A9G0-01 14 20482734 20482734 G T OR4K14 Missense_Mutation p.L207I 0.10 tolerated(0.46) benign(0.075) TCGA-SY-A9G0-01 15 41856423 41856423 C A TYRO3 Missense_Mutation p.L208I 0.06 tolerated(0.17) benign(0) TCGA-SY-A9G0-01 16 50354263 50354263 C G BRD7 Missense_Mutation p.R552T 0.10 deleterious(0.02) benign(0.135) TCGA-SY-A9G0-01 16 72139128 72139128 C G DHX38 Intron 0.11 TCGA-SY-A9G0-01 17 26919030 26919030 C G SPAG5 Missense_Mutation p.S411T 0.12 deleterious(0.01) benign(0.318) TCGA-SY-A9G0-01 17 36483325 36483325 C G GPR179 Missense_Mutation p.E2043Q 0.15 tolerated(0.07) probably_damaging(0.995) TCGA-SY-A9G0-01 17 38950178 38950178 C T KRT28 Missense_Mutation p.E367K 0.10 deleterious(0.02) possibly_damaging(0.867) TCGA-SY-A9G0-01 17 39114797 39114797 G A KRT39 3'UTR 0.05 TCGA-SY-A9G0-01 17 63010910 63010910 C G GNA13 Missense_Mutation p.R200T 0.09 deleterious(0) probably_damaging(0.946) TCGA-SY-A9G0-01 17 73814729 73814729 C T UNK Silent p.L460L 0.07 TCGA-SY-A9G0-01 17 961237 961237 C G ABR Missense_Mutation p.E452Q 0.08 deleterious(0.04) possibly_damaging(0.608) TCGA-SY-A9G0-01 18 67993149 67993149 T C SOCS6 Silent p.R415R 0.11 TCGA-SY-A9G0-01 19 38102883 38102883 G C ZNF540 Missense_Mutation p.Q234H 0.22 tolerated(0.12) benign(0.206) TCGA-SY-A9G0-01 19 45412562 45412562 C T APOE 3'UTR 0.36 TCGA-SY-A9G0-01 19 47969386 47969386 C T SLC8A2 Missense_Mutation p.R92H 0.05 deleterious(0) probably_damaging(1) TCGA-SY-A9G0-01 1 158641928 158641928 C T SPTA1 Missense_Mutation p.R470H 0.05 tolerated(0.59) benign(0.001) TCGA-SY-A9G0-01 1 211844577 211844577 A C NEK2 Missense_Mutation p.L202W 0.18 deleterious(0) probably_damaging(1) TCGA-SY-A9G0-01 1 222802358 222802358 C G MIA3 Missense_Mutation p.A599G 0.11 tolerated(0.47) benign(0.003) TCGA-SY-A9G0-01 1 47325347 47325347 C G CYP4Z2P RNA 0.11 TCGA-SY-A9G0-01 1 47325450 47325450 C T CYP4Z2P RNA 0.11 TCGA-SY-A9G0-01 1 52254900 52254900 C T NRD1 3'UTR 0.07 TCGA-SY-A9G0-01 1 70614211 70614211 G C LRRC40 Silent p.L554L 0.16 TCGA-SY-A9G0-01 1 74575197 74575197 T C LRRIQ3 Missense_Mutation p.I250V 0.17 tolerated(0.09) benign(0.075) TCGA-SY-A9G0-01 20 33874648 33874648 C T FAM83C Missense_Mutation p.R645H 0.18 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-SY-A9G0-01 20 40049239 40049239 T A CHD6 Silent p.T2012T 0.26 TCGA-SY-A9G0-01 20 62407302 62407302 G A ZBTB46 Silent p.S317S 0.07 TCGA-SY-A9G0-01 21 10944669 10944669 T C TPTE Missense_Mutation p.R189G 0.06 tolerated(0.06) probably_damaging(0.99) TCGA-SY-A9G0-01 21 34004012 34004012 G A SYNJ1 Nonsense_Mutation p.Q1378* 0.05 TCGA-SY-A9G0-01 22 25623911 25623911 C T CRYBB2 Nonsense_Mutation p.R89* 0.13 TCGA-SY-A9G0-01 22 31592944 31592944 C G RNF185 Missense_Mutation p.Q111E 0.13 tolerated(0.2) benign(0.048) TCGA-SY-A9G0-01 22 38323565 38323565 C G MICALL1 Nonsense_Mutation p.S538* 0.12 TCGA-SY-A9G0-01 2 162894933 162894933 C T DPP4 Splice_Site p.X165_splice 0.08 TCGA-SY-A9G0-01 2 219894869 219894869 G A CCDC108 Missense_Mutation p.S408L 0.18 deleterious(0.03) possibly_damaging(0.885) TCGA-SY-A9G0-01 2 241709104 241709104 G C KIF1A Missense_Mutation p.A454G 0.23 deleterious(0) probably_damaging(0.99) TCGA-SY-A9G0-01 2 71351605 71351605 G A MCEE Nonsense_Mutation p.Q37* 0.07 TCGA-SY-A9G0-01 2 71747336 71747336 C T DYSF Missense_Mutation p.P344L 0.20 deleterious(0.01) benign(0.413) TCGA-SY-A9G0-01 3 113440614 113440614 T C NAA50 Missense_Mutation p.D168G 0.25 deleterious_low_confidence(0.01) benign(0.006) TCGA-SY-A9G0-01 3 121341630 121341630 C T FBXO40 Missense_Mutation p.P452S 0.14 tolerated(0.12) benign(0.098) TCGA-SY-A9G0-01 3 151166340 151166340 T A IGSF10 Missense_Mutation p.R477W 0.08 deleterious(0) probably_damaging(0.91) TCGA-SY-A9G0-01 3 430987 430987 G A CHL1 Nonsense_Mutation p.W767* 0.14 TCGA-SY-A9G0-01 3 52328178 52328178 G T GLYCTK 3'Flank 0.11 TCGA-SY-A9G0-01 4 100009893 100009893 T A ADH5 5'UTR 0.06 TCGA-SY-A9G0-01 5 139908519 139908519 C T ANKHD1 Silent p.S1996S 0.19 TCGA-SY-A9G0-01 5 140229589 140229589 G A PCDHA9 Silent p.S503S 0.16 TCGA-SY-A9G0-01 5 140755394 140755394 G A PCDHGA6 Missense_Mutation p.A582T 0.14 deleterious_low_confidence(0.02) probably_damaging(0.918) TCGA-SY-A9G0-01 5 143200100 143200100 G C HMHB1 Silent p.L31L 0.16 TCGA-SY-A9G0-01 5 7784525 7784525 C A ADCY2 Missense_Mutation p.S811Y 0.06 deleterious(0.01) benign(0.092) TCGA-SY-A9G0-01 6 161491786 161491786 T G MAP3K4 Silent p.V618V 0.09 TCGA-SY-A9G0-01 6 161491787 161491787 C T MAP3K4 Missense_Mutation p.L619F 0.09 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G0-01 6 33694544 33694544 G A IP6K3 Missense_Mutation p.R185C 0.13 deleterious(0) probably_damaging(1) TCGA-SY-A9G0-01 6 97344707 97344707 T C NDUFAF4 Silent p.K51K 0.14 TCGA-SY-A9G0-01 7 143056071 143056071 C T FAM131B Missense_Mutation p.M105I 0.15 deleterious(0.03) benign(0.041) TCGA-SY-A9G0-01 8 144895083 144895083 G C SCRIB Missense_Mutation p.R231G 0.29 possibly_damaging(0.768) TCGA-SY-A9G0-01 8 8865558 8865558 G A ERI1 Missense_Mutation p.D63N 0.08 tolerated(0.11) benign(0.038) TCGA-SY-A9G0-01 9 12695751 12695751 T A TYRP1 Missense_Mutation p.F208I 0.08 deleterious(0.03) possibly_damaging(0.847) TCGA-SY-A9G0-01 9 74842873 74842873 C T GDA Silent p.H279H 0.12 TCGA-SY-A9G0-01 X 135429265 135429265 G A GPR112 Missense_Mutation p.D1134N 0.24 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G0-01 X 151336679 151336679 T C GABRA3 3'UTR 0.17 TCGA-SY-A9G5-01 10 101606802 101606802 G C ABCC2 Missense_Mutation p.E1411Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-SY-A9G5-01 10 104136520 104136520 G C GBF1 Missense_Mutation p.K1416N 0.30 deleterious(0.03) benign(0.032) TCGA-SY-A9G5-01 10 104163063 104163063 G A PSD Missense_Mutation p.S990F 0.20 deleterious(0) benign(0.085) TCGA-SY-A9G5-01 10 104596838 104596838 G C CYP17A1 Missense_Mutation p.S94C 0.23 deleterious(0.05) benign(0.086) TCGA-SY-A9G5-01 10 104687277 104687277 G C CNNM2 Intron 0.29 TCGA-SY-A9G5-01 10 115917381 115917381 C G C10orf118 Missense_Mutation p.D231H 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-SY-A9G5-01 10 115981187 115981187 G A TDRD1 Missense_Mutation p.E948K 0.14 deleterious(0) probably_damaging(0.953) TCGA-SY-A9G5-01 10 119026537 119026537 C T SLC18A2 Silent p.S371S 0.13 TCGA-SY-A9G5-01 10 11962985 11962985 C G UPF2 3'UTR 0.32 TCGA-SY-A9G5-01 10 119798946 119798946 G C RAB11FIP2 Missense_Mutation p.L268V 0.27 tolerated(0.34) benign(0.011) TCGA-SY-A9G5-01 10 121674253 121674253 C G SEC23IP Missense_Mutation p.Q442E 0.20 tolerated(0.08) benign(0.017) TCGA-SY-A9G5-01 10 1230816 1230816 C T ADARB2 Silent p.A676A 0.14 TCGA-SY-A9G5-01 10 128974302 128974302 G C FAM196A Missense_Mutation p.L120V 0.34 deleterious(0.01) possibly_damaging(0.834) TCGA-SY-A9G5-01 10 129902181 129902181 C G MKI67 Missense_Mutation p.E2641D 0.24 deleterious(0.02) possibly_damaging(0.872) TCGA-SY-A9G5-01 10 15296861 15296861 G A FAM171A1 Missense_Mutation p.R146C 0.17 deleterious(0.03) probably_damaging(0.912) TCGA-SY-A9G5-01 10 15614295 15614295 T A ITGA8 Missense_Mutation p.E851V 0.24 tolerated(0.07) probably_damaging(0.991) TCGA-SY-A9G5-01 10 15614296 15614296 C T ITGA8 Missense_Mutation p.E851K 0.24 tolerated(0.26) probably_damaging(0.92) TCGA-SY-A9G5-01 10 17110613 17110613 C A CUBN Nonsense_Mutation p.E928* 0.27 TCGA-SY-A9G5-01 10 24820776 24820776 G A KIAA1217 Missense_Mutation p.E1034K 0.23 tolerated(0.1) probably_damaging(0.997) TCGA-SY-A9G5-01 10 24883912 24883912 C G ARHGAP21 Silent p.L1281L 0.25 TCGA-SY-A9G5-01 10 24896462 24896462 C T ARHGAP21 Missense_Mutation p.E884K 0.25 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 10 27024173 27024173 C G PDSS1 Missense_Mutation p.S279C 0.31 tolerated(0.05) benign(0.097) TCGA-SY-A9G5-01 10 27493478 27493478 T A ACBD5 Nonsense_Mutation p.R486* 0.33 TCGA-SY-A9G5-01 10 29769505 29769505 C A SVIL Missense_Mutation p.A1780S 0.11 tolerated(0.19) benign(0.219) TCGA-SY-A9G5-01 10 29769514 29769514 C G SVIL Missense_Mutation p.E1777Q 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-SY-A9G5-01 10 31809260 31809260 G C ZEB1 Missense_Mutation p.E334Q 0.33 deleterious(0) possibly_damaging(0.833) TCGA-SY-A9G5-01 10 34805961 34805961 G A PARD3 Nonsense_Mutation p.Q117* 0.25 TCGA-SY-A9G5-01 10 35320243 35320243 C A CUL2 Missense_Mutation p.M476I 0.19 deleterious(0.01) benign(0.194) TCGA-SY-A9G5-01 10 35320254 35320254 C T CUL2 Missense_Mutation p.E473K 0.19 deleterious(0) probably_damaging(0.991) TCGA-SY-A9G5-01 10 38242660 38242660 C G ZNF25 Missense_Mutation p.E89Q 0.06 tolerated(0.19) benign(0.015) TCGA-SY-A9G5-01 10 43659401 43659401 G A CSGALNACT2 Nonsense_Mutation p.W356* 0.24 TCGA-SY-A9G5-01 10 46113694 46113694 G A ZFAND4 Missense_Mutation p.H648Y 0.10 tolerated(0.39) possibly_damaging(0.742) TCGA-SY-A9G5-01 10 46135391 46135391 G C ZFAND4 Nonsense_Mutation p.S197* 0.22 TCGA-SY-A9G5-01 10 50859929 50859929 G C CHAT Splice_Site p.X504_splice 0.21 TCGA-SY-A9G5-01 10 55566733 55566733 G A PCDH15 Missense_Mutation p.S1551F 0.27 deleterious_low_confidence(0) benign(0.14) TCGA-SY-A9G5-01 10 70716052 70716052 G A DDX21 Missense_Mutation p.R24Q 0.29 tolerated_low_confidence(0.08) benign(0.24) TCGA-SY-A9G5-01 10 71243548 71243548 C T TSPAN15 Silent p.L66L 0.28 TCGA-SY-A9G5-01 10 7326224 7326224 G A SFMBT2 Intron 0.22 TCGA-SY-A9G5-01 10 7614341 7614341 C G ITIH5 Intron 0.22 TCGA-SY-A9G5-01 10 87406997 87406997 C G GRID1 Missense_Mutation p.D719H 0.30 deleterious(0) probably_damaging(0.975) TCGA-SY-A9G5-01 10 88768713 88768713 C T RP11-96C23.10 3'Flank 0.28 TCGA-SY-A9G5-01 10 93621791 93621791 C G TNKS2 Missense_Mutation p.S1106C 0.35 tolerated(0.11) probably_damaging(0.997) TCGA-SY-A9G5-01 10 93756242 93756242 G C BTAF1 Missense_Mutation p.M1142I 0.40 deleterious(0.04) benign(0.076) TCGA-SY-A9G5-01 11 1011580 1011580 C G AP2A2 3'UTR 0.33 TCGA-SY-A9G5-01 11 102962543 102962543 C G DCUN1D5 Missense_Mutation p.G20A 0.10 tolerated(0.78) benign(0) TCGA-SY-A9G5-01 11 103182613 103182613 C G DYNC2H1 Missense_Mutation p.P3841A 0.22 possibly_damaging(0.868) TCGA-SY-A9G5-01 11 107917046 107917046 C A CUL5 Missense_Mutation p.H62N 0.15 tolerated(0.42) benign(0.024) TCGA-SY-A9G5-01 11 108031960 108031960 C G NPAT Missense_Mutation p.D1285H 0.25 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 11 108128241 108128241 C G ATM Missense_Mutation p.L762V 0.30 tolerated(0.28) benign(0.002) TCGA-SY-A9G5-01 11 110450212 110450212 G T ARHGAP20 Missense_Mutation p.S1153Y 0.15 deleterious_low_confidence(0.04) benign(0.17) TCGA-SY-A9G5-01 11 111957622 111957622 C G SDHD 5'UTR 0.24 TCGA-SY-A9G5-01 11 113683118 113683118 C T USP28 Missense_Mutation p.D618N 0.10 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 11 116707814 116707814 C G APOA1 Missense_Mutation p.V35L 0.16 tolerated(0.24) benign(0.019) TCGA-SY-A9G5-01 11 117152339 117152340 - T RNF214 Frame_Shift_Ins p.L421Ffs*91 0.11 TCGA-SY-A9G5-01 11 117374593 117374593 C T DSCAML1 Missense_Mutation p.D836N 0.21 tolerated(0.09) benign(0.329) TCGA-SY-A9G5-01 11 118342780 118342780 G C KMT2A Silent p.R302R 0.32 TCGA-SY-A9G5-01 11 118342877 118342877 G T KMT2A Nonsense_Mutation p.E335* 0.16 TCGA-SY-A9G5-01 11 118343252 118343252 G A KMT2A Missense_Mutation p.E460K 0.28 probably_damaging(0.952) TCGA-SY-A9G5-01 11 118498655 118498655 C G PHLDB1 Silent p.L372L 0.26 TCGA-SY-A9G5-01 11 118772906 118772906 C G BCL9L Missense_Mutation p.E516Q 0.20 probably_damaging(0.996) TCGA-SY-A9G5-01 11 118971490 118971490 C A DPAGT1 Missense_Mutation p.D116Y 0.18 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 11 119182803 119182803 C G MCAM Missense_Mutation p.E368Q 0.15 tolerated(0.13) probably_damaging(0.979) TCGA-SY-A9G5-01 11 119548436 119548436 G A PVRL1 Missense_Mutation p.R188W 0.14 deleterious(0) probably_damaging(0.956) TCGA-SY-A9G5-01 11 120918361 120918361 C T TBCEL Silent p.L86L 0.25 TCGA-SY-A9G5-01 11 122775117 122775117 C T C11orf63 Missense_Mutation p.H277Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 11 124413354 124413354 G C OR8B12 Missense_Mutation p.S66C 0.18 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-SY-A9G5-01 11 128842774 128842774 G C ARHGAP32 Silent p.V1195V 0.22 TCGA-SY-A9G5-01 11 130332087 130332087 G T ADAMTS15 Missense_Mutation p.R399L 0.34 deleterious(0) probably_damaging(0.983) TCGA-SY-A9G5-01 11 13435107 13435107 C G BTBD10 Missense_Mutation p.E260Q 0.33 deleterious(0) benign(0.088) TCGA-SY-A9G5-01 11 16838392 16838392 G A PLEKHA7 Silent p.I607I 0.10 TCGA-SY-A9G5-01 11 17190513 17190513 G A PIK3C2A Missense_Mutation p.S259F 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.541) TCGA-SY-A9G5-01 11 18636325 18636325 G C SPTY2D1 Nonsense_Mutation p.S499* 0.35 TCGA-SY-A9G5-01 11 2950603 2950603 G A PHLDA2 5'UTR 0.38 TCGA-SY-A9G5-01 11 33689439 33689439 C G KIAA1549L Missense_Mutation p.I1763M 0.25 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 11 43283967 43283967 C G HNRNPKP3 RNA 0.20 TCGA-SY-A9G5-01 11 46406664 46406664 C T CHRM4 3'UTR 0.65 TCGA-SY-A9G5-01 11 46563946 46563946 C T AMBRA1 Missense_Mutation p.E451K 0.10 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-SY-A9G5-01 11 46563952 46563952 C T AMBRA1 Missense_Mutation p.E449K 0.12 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-SY-A9G5-01 11 46742070 46742070 C T F2 Intron 0.21 TCGA-SY-A9G5-01 11 46742363 46742363 C G F2 Missense_Mutation p.R97G 0.26 deleterious(0) probably_damaging(0.954) TCGA-SY-A9G5-01 11 47259414 47259414 C T DDB2 Silent p.L350L 0.30 TCGA-SY-A9G5-01 11 47259489 47259489 C T DDB2 Silent p.F375F 0.39 TCGA-SY-A9G5-01 11 47436657 47436657 C G SLC39A13 Silent p.L329L 0.27 TCGA-SY-A9G5-01 11 47436827 47436827 C A SLC39A13 Intron 0.12 TCGA-SY-A9G5-01 11 47689240 47689240 C T AGBL2 Silent p.Q741Q 0.14 TCGA-SY-A9G5-01 11 47837037 47837037 C T NUP160 Silent p.L560L 0.11 TCGA-SY-A9G5-01 11 48238525 48238525 C T OR4B1 Missense_Mutation p.S55F 0.11 deleterious(0.03) benign(0.12) TCGA-SY-A9G5-01 11 48239180 48239180 C A OR4B1 Nonsense_Mutation p.Y273* 0.33 TCGA-SY-A9G5-01 11 48267150 48267150 G A OR4X2 Silent p.V165V 0.18 TCGA-SY-A9G5-01 11 557600 557600 G C C11orf35 Missense_Mutation p.S199C 0.21 deleterious(0) probably_damaging(0.972) TCGA-SY-A9G5-01 11 56185702 56185702 C T OR5R1 Missense_Mutation p.E3K 0.09 tolerated(1) benign(0) TCGA-SY-A9G5-01 11 56230367 56230367 C G OR5M9 Missense_Mutation p.E171Q 0.28 tolerated(0.42) benign(0.12) TCGA-SY-A9G5-01 11 57321943 57321943 C T UBE2L6 Missense_Mutation p.E93K 0.16 tolerated(0.09) benign(0.043) TCGA-SY-A9G5-01 11 5776114 5776114 C G OR52N4 Silent p.L48L 0.33 TCGA-SY-A9G5-01 11 57886551 57886551 G A OR9I1 Silent p.R122R 0.26 TCGA-SY-A9G5-01 11 60164085 60164085 C G MS4A14 Missense_Mutation p.H12D 0.28 tolerated(0.22) benign(0.053) TCGA-SY-A9G5-01 11 60468455 60468455 C T MS4A8 Missense_Mutation p.P41L 0.12 deleterious(0.04) possibly_damaging(0.89) TCGA-SY-A9G5-01 11 607589 607589 C A PHRF1 Silent p.I710I 0.22 TCGA-SY-A9G5-01 11 61548631 61548631 C T MYRF Missense_Mutation p.S865L 0.31 tolerated(0.14) benign(0.001) TCGA-SY-A9G5-01 11 62294044 62294044 G C AHNAK Missense_Mutation p.I2615M 0.13 possibly_damaging(0.823) TCGA-SY-A9G5-01 11 62444394 62444394 G A UBXN1 Silent p.L245L 0.15 TCGA-SY-A9G5-01 11 62445439 62445439 C T UBXN1 Missense_Mutation p.E148K 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-SY-A9G5-01 11 62763524 62763524 C G SLC22A8 Missense_Mutation p.E288Q 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-SY-A9G5-01 11 64029985 64029985 C T PLCB3 Silent p.F715F 0.24 TCGA-SY-A9G5-01 11 64044410 64044410 G C BAD Intron 0.33 TCGA-SY-A9G5-01 11 64434880 64434880 G A NRXN2 Missense_Mutation p.S547F 0.11 deleterious(0.01) benign(0.002) TCGA-SY-A9G5-01 11 64599936 64599936 G C CDC42BPG Missense_Mutation p.I1017M 0.21 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 11 64627438 64627438 G A EHD1 Silent p.L291L 0.14 TCGA-SY-A9G5-01 11 64876767 64876767 C A VPS51 Missense_Mutation p.Q487K 0.32 tolerated(0.32) benign(0.018) TCGA-SY-A9G5-01 11 64876790 64876790 C T VPS51 Silent p.I494I 0.36 TCGA-SY-A9G5-01 11 65048486 65048486 G C POLA2 Missense_Mutation p.Q256H 0.29 deleterious(0) possibly_damaging(0.67) TCGA-SY-A9G5-01 11 65357662 65357662 G A EHBP1L1 Silent p.L1388L 0.19 TCGA-SY-A9G5-01 11 65413350 65413350 C G SIPA1 Silent p.L395L 0.33 TCGA-SY-A9G5-01 11 65714407 65714407 G C TSGA10IP RNA 0.12 TCGA-SY-A9G5-01 11 65786302 65786302 C T CATSPER1 Missense_Mutation p.E733K 0.22 tolerated(0.09) benign(0.164) TCGA-SY-A9G5-01 11 66191424 66191424 G A NPAS4 Missense_Mutation p.E355K 0.27 tolerated(0.1) benign(0) TCGA-SY-A9G5-01 11 66811139 66811139 G A SYT12 Missense_Mutation p.D218N 0.17 tolerated(0.43) benign(0.062) TCGA-SY-A9G5-01 11 67275127 67275127 C G CDK2AP2 Missense_Mutation p.G39A 0.16 tolerated(1) unknown(0) TCGA-SY-A9G5-01 11 69924769 69924769 C A ANO1 Silent p.I19I 0.11 TCGA-SY-A9G5-01 11 70218483 70218483 G C PPFIA1 Missense_Mutation p.D1010H 0.33 deleterious(0) probably_damaging(0.994) TCGA-SY-A9G5-01 11 73686036 73686036 C A UCP2 3'UTR 0.23 TCGA-SY-A9G5-01 11 76893186 76893186 G C MYO7A Missense_Mutation p.E1032Q 0.23 tolerated(0.18) possibly_damaging(0.687) TCGA-SY-A9G5-01 11 774083 774083 C T PDDC1 Missense_Mutation p.E58K 0.35 deleterious(0.01) probably_damaging(0.938) TCGA-SY-A9G5-01 11 77412713 77412713 C G RSF1 Missense_Mutation p.E521Q 0.28 deleterious_low_confidence(0.03) benign(0.011) TCGA-SY-A9G5-01 11 82444565 82444565 G A FAM181B Silent p.F69F 0.33 TCGA-SY-A9G5-01 11 828921 828921 C T EFCAB4A Missense_Mutation p.H79Y 0.25 tolerated(0.07) possibly_damaging(0.574) TCGA-SY-A9G5-01 11 85411562 85411562 G A SYTL2 Silent p.V1121V 0.12 TCGA-SY-A9G5-01 11 89018057 89018057 G C TYR Missense_Mutation p.R434T 0.25 tolerated(0.59) benign(0.008) TCGA-SY-A9G5-01 11 89537392 89537392 G C TRIM49 Silent p.L82L 0.17 TCGA-SY-A9G5-01 11 92088489 92088489 G C FAT3 Missense_Mutation p.D1071H 0.21 probably_damaging(1) TCGA-SY-A9G5-01 11 92564867 92564867 C A FAT3 Silent p.I3187I 0.32 TCGA-SY-A9G5-01 11 92624217 92624217 G C FAT3 Missense_Mutation p.E4570Q 0.21 possibly_damaging(0.905) TCGA-SY-A9G5-01 11 9868505 9868505 G A SBF2 Nonsense_Mutation p.Q978* 0.29 TCGA-SY-A9G5-01 12 10010224 10010224 C G CLEC2B Missense_Mutation p.R29P 0.24 tolerated(0.3) benign(0.002) TCGA-SY-A9G5-01 12 102479617 102479617 C T NUP37 Missense_Mutation p.G156E 0.10 tolerated(0.27) probably_damaging(0.988) TCGA-SY-A9G5-01 12 102589795 102589795 G A PARPBP Missense_Mutation p.R489K 0.27 tolerated(0.15) possibly_damaging(0.775) TCGA-SY-A9G5-01 12 10332182 10332182 C G TMEM52B 5'UTR 0.25 TCGA-SY-A9G5-01 12 107712809 107712809 C T BTBD11 Missense_Mutation p.S31F 0.14 deleterious(0) unknown(0) TCGA-SY-A9G5-01 12 108082573 108082573 G A PWP1 Missense_Mutation p.D105N 0.16 tolerated(0.29) benign(0.001) TCGA-SY-A9G5-01 12 109639402 109639402 C A ACACB Missense_Mutation p.Q937K 0.25 tolerated(0.31) benign(0.005) TCGA-SY-A9G5-01 12 110456221 110456221 G A ANKRD13A Missense_Mutation p.D158N 0.23 deleterious(0.01) probably_damaging(1) TCGA-SY-A9G5-01 12 111290672 111290672 G A CCDC63 5'UTR 0.16 TCGA-SY-A9G5-01 12 111785574 111785574 G A CUX2 Silent p.Q1302Q 0.34 TCGA-SY-A9G5-01 12 112187118 112187118 C T ACAD10 Missense_Mutation p.S960L 0.28 deleterious(0.03) probably_damaging(0.978) TCGA-SY-A9G5-01 12 112303982 112303982 C G MAPKAPK5 Missense_Mutation p.Q45E 0.21 tolerated(0.1) benign(0.004) TCGA-SY-A9G5-01 12 112578769 112578769 G T TRAFD1 Silent p.L128L 0.25 TCGA-SY-A9G5-01 12 112610617 112610617 C T HECTD4 Nonsense_Mutation p.W3735* 0.29 TCGA-SY-A9G5-01 12 115117368 115117368 C T TBX3 Missense_Mutation p.R269Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-SY-A9G5-01 12 116428873 116428873 C T MED13L Missense_Mutation p.E1296K 0.28 deleterious(0.01) unknown(0) TCGA-SY-A9G5-01 12 119966551 119966551 G A CCDC60 Nonsense_Mutation p.W454* 0.24 TCGA-SY-A9G5-01 12 120510357 120510357 C T CCDC64 Silent p.L378L 0.11 TCGA-SY-A9G5-01 12 121442075 121442075 C G C12orf43 Missense_Mutation p.G224R 0.27 deleterious(0.01) benign(0.273) TCGA-SY-A9G5-01 12 122825967 122825967 G A CLIP1 Missense_Mutation p.T595M 0.25 deleterious(0.03) possibly_damaging(0.684) TCGA-SY-A9G5-01 12 123099619 123099619 C G KNTC1 Missense_Mutation p.L1987V 0.15 deleterious(0.04) probably_damaging(0.947) TCGA-SY-A9G5-01 12 124175190 124175190 C G TCTN2 Missense_Mutation p.I334M 0.24 tolerated(0.22) possibly_damaging(0.497) TCGA-SY-A9G5-01 12 12483226 12483226 G C MANSC1 Nonsense_Mutation p.S344* 0.35 TCGA-SY-A9G5-01 12 125834079 125834079 C A TMEM132B Missense_Mutation p.S45Y 0.22 tolerated(0.77) benign(0.108) TCGA-SY-A9G5-01 12 130184791 130184791 C T TMEM132D Missense_Mutation p.E178K 0.25 deleterious(0) probably_damaging(0.923) TCGA-SY-A9G5-01 12 13214645 13214645 C G KIAA1467 Missense_Mutation p.I223M 0.11 deleterious(0) benign(0.445) TCGA-SY-A9G5-01 12 13214662 13214662 C A KIAA1467 Missense_Mutation p.T229K 0.07 tolerated(0.35) benign(0.107) TCGA-SY-A9G5-01 12 132512764 132512764 C T EP400 Missense_Mutation p.S1771L 0.25 unknown(0) TCGA-SY-A9G5-01 12 133248872 133248872 C G POLE Missense_Mutation p.E575Q 0.31 deleterious(0.03) benign(0.23) TCGA-SY-A9G5-01 12 133389979 133389979 C G GOLGA3 Missense_Mutation p.E145Q 0.35 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-SY-A9G5-01 12 14650678 14650678 C T ATF7IP Nonsense_Mutation p.Q1162* 0.22 TCGA-SY-A9G5-01 12 14650708 14650708 C G ATF7IP Missense_Mutation p.Q1172E 0.27 tolerated_low_confidence(0.06) unknown(0) TCGA-SY-A9G5-01 12 14650991 14650991 C G ATF7IP Missense_Mutation p.S1266C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-SY-A9G5-01 12 15811433 15811433 G C EPS8 Missense_Mutation p.L342V 0.28 deleterious(0.01) possibly_damaging(0.748) TCGA-SY-A9G5-01 12 21711191 21711191 G A GYS2 Silent p.P455P 0.20 TCGA-SY-A9G5-01 12 41900508 41900508 C T PDZRN4 Missense_Mutation p.S365L 0.16 tolerated(0.08) probably_damaging(0.972) TCGA-SY-A9G5-01 12 41966808 41966808 G A PDZRN4 Missense_Mutation p.E743K 0.26 deleterious(0) probably_damaging(0.993) TCGA-SY-A9G5-01 12 43819487 43819487 G T ADAMTS20 Missense_Mutation p.Q1372K 0.11 tolerated(1) benign(0.067) TCGA-SY-A9G5-01 12 46231349 46231349 C T ARID2 Nonsense_Mutation p.Q397* 0.32 TCGA-SY-A9G5-01 12 46315725 46315725 C G SCAF11 3'UTR 0.14 TCGA-SY-A9G5-01 12 48491874 48491874 C G SENP1 Missense_Mutation p.G13A 0.28 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-SY-A9G5-01 12 49392972 49392972 T C DDN Silent p.L33L 0.19 TCGA-SY-A9G5-01 12 49431737 49431737 G A KMT2D Silent p.F3134F 0.38 TCGA-SY-A9G5-01 12 51122411 51122411 C G DIP2B Missense_Mutation p.I1197M 0.16 deleterious(0.02) probably_damaging(0.961) TCGA-SY-A9G5-01 12 53169378 53169378 G C KRT76 Missense_Mutation p.F203L 0.31 deleterious(0) probably_damaging(0.983) TCGA-SY-A9G5-01 12 53494636 53494636 G T IGFBP6 Nonsense_Mutation p.E159* 0.11 TCGA-SY-A9G5-01 12 53670984 53670984 C T ESPL1 Silent p.I686I 0.32 TCGA-SY-A9G5-01 12 53895841 53895841 C T TARBP2 Silent p.I32I 0.27 TCGA-SY-A9G5-01 12 53895848 53895848 C A TARBP2 Missense_Mutation p.L35M 0.24 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 12 54106936 54106936 C T CALCOCO1 Missense_Mutation p.E616K 0.27 deleterious(0.01) probably_damaging(0.93) TCGA-SY-A9G5-01 12 54798257 54798257 G C ITGA5 Missense_Mutation p.L474V 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-SY-A9G5-01 12 56194413 56194413 C G SARNP Missense_Mutation p.E62Q 0.23 tolerated(0.1) possibly_damaging(0.478) TCGA-SY-A9G5-01 12 56847452 56847452 C T MIP Missense_Mutation p.D150N 0.26 deleterious(0.02) probably_damaging(1) TCGA-SY-A9G5-01 12 57905478 57905478 C G MARS Intron 0.27 TCGA-SY-A9G5-01 12 6559440 6559440 C T CD27 Missense_Mutation p.P124S 0.13 tolerated(0.19) benign(0.009) TCGA-SY-A9G5-01 12 6573959 6573959 C T VAMP1 Intron 0.16 TCGA-SY-A9G5-01 12 6670928 6670928 C G NOP2 Missense_Mutation p.G403A 0.31 tolerated(0.23) probably_damaging(0.98) TCGA-SY-A9G5-01 12 670542 670542 C T B4GALNT3 Silent p.L974L 0.15 TCGA-SY-A9G5-01 12 6761434 6761434 C T ING4 Intron 0.22 TCGA-SY-A9G5-01 12 68553426 68553426 G C IFNG 5'UTR 0.47 TCGA-SY-A9G5-01 12 68696427 68696427 G C MDM1 Missense_Mutation p.L649V 0.25 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 12 6879607 6879607 G C PTMS Nonstop_Mutation p.*103Sext*69 0.17 TCGA-SY-A9G5-01 12 69965088 69965088 G A FRS2 Missense_Mutation p.E96K 0.18 deleterious(0.02) benign(0.226) TCGA-SY-A9G5-01 12 71286665 71286665 C T PTPRR Missense_Mutation p.E51K 0.06 tolerated_low_confidence(0.06) benign(0.007) TCGA-SY-A9G5-01 12 75804399 75804399 G C GLIPR1L2 Missense_Mutation p.E140D 0.24 deleterious(0.01) probably_damaging(0.958) TCGA-SY-A9G5-01 12 7842563 7842563 G A GDF3 Missense_Mutation p.P336S 0.28 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 12 78570935 78570935 C T NAV3 Silent p.F1713F 0.27 TCGA-SY-A9G5-01 12 89992998 89992998 C T ATP2B1 Missense_Mutation p.E1083K 0.23 tolerated(0.32) benign(0.167) TCGA-SY-A9G5-01 12 9013761 9013761 C T A2ML1 Missense_Mutation p.L1124F 0.26 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 12 94703867 94703867 C T CCDC41 Missense_Mutation p.E610K 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-SY-A9G5-01 12 95419032 95419032 C G NR2C1 Splice_Site p.X511_splice 0.28 TCGA-SY-A9G5-01 12 95453694 95453694 C T NR2C1 Missense_Mutation p.D118N 0.35 deleterious(0.01) possibly_damaging(0.549) TCGA-SY-A9G5-01 12 96676350 96676350 C T CDK17 Missense_Mutation p.E465K 0.27 tolerated(0.11) benign(0.047) TCGA-SY-A9G5-01 12 99019876 99019876 C G IKBIP Missense_Mutation p.Q322H 0.34 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 13 108863249 108863249 C G LIG4 Missense_Mutation p.G123A 0.33 deleterious(0.01) possibly_damaging(0.893) TCGA-SY-A9G5-01 13 111134908 111134908 G C COL4A2 Missense_Mutation p.G935A 0.41 possibly_damaging(0.628) TCGA-SY-A9G5-01 13 111367776 111367776 C T ING1 5'UTR 0.15 TCGA-SY-A9G5-01 13 113158412 113158412 G A TUBGCP3 Silent p.I747I 0.20 TCGA-SY-A9G5-01 13 113835542 113835542 C T PCID2 Missense_Mutation p.E284K 0.07 tolerated(0.13) benign(0.083) TCGA-SY-A9G5-01 13 113974731 113974731 G A LAMP1 Silent p.V274V 0.43 TCGA-SY-A9G5-01 13 115037882 115037882 G C CDC16 Missense_Mutation p.M609I 0.36 deleterious_low_confidence(0.02) benign(0.023) TCGA-SY-A9G5-01 13 23909107 23909107 G C SACS Missense_Mutation p.L2970V 0.45 benign(0.005) TCGA-SY-A9G5-01 13 25480410 25480410 G A CENPJ Missense_Mutation p.S589L 0.45 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 13 25671985 25671985 C A PABPC3 Missense_Mutation p.P550H 0.35 deleterious(0) probably_damaging(0.978) TCGA-SY-A9G5-01 13 27257036 27257036 G A WASF3 Missense_Mutation p.E426K 0.41 tolerated(0.13) benign(0.242) TCGA-SY-A9G5-01 13 29278167 29278167 C T SLC46A3 Missense_Mutation p.G405E 0.51 tolerated(0.11) probably_damaging(0.955) TCGA-SY-A9G5-01 13 32907191 32907191 G A BRCA2 Missense_Mutation p.D526N 0.13 tolerated(0.89) benign(0.013) TCGA-SY-A9G5-01 13 32907259 32907259 G A BRCA2 Silent p.Q548Q 0.08 TCGA-SY-A9G5-01 13 36049660 36049660 C A MAB21L1 Nonsense_Mutation p.E206* 0.09 TCGA-SY-A9G5-01 13 36905578 36905578 G C SPG20 Silent p.L322L 0.12 TCGA-SY-A9G5-01 13 37678976 37678976 C G CSNK1A1L Missense_Mutation p.D140H 0.34 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-SY-A9G5-01 13 38357324 38357324 C G TRPC4 Missense_Mutation p.K49N 0.13 deleterious(0) probably_damaging(0.925) TCGA-SY-A9G5-01 13 39262404 39262404 G T FREM2 Missense_Mutation p.R308M 0.34 deleterious(0) probably_damaging(0.922) TCGA-SY-A9G5-01 13 39262405 39262405 G T FREM2 Missense_Mutation p.R308S 0.35 tolerated(0.07) possibly_damaging(0.449) TCGA-SY-A9G5-01 13 40175328 40175328 C A LHFP Missense_Mutation p.G9V 0.14 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 13 42783527 42783527 G A DGKH Missense_Mutation p.E926K 0.13 deleterious(0) possibly_damaging(0.868) TCGA-SY-A9G5-01 13 49712891 49712891 G A FNDC3A Missense_Mutation p.E257K 0.14 tolerated(0.91) benign(0.004) TCGA-SY-A9G5-01 13 50235297 50235297 C T EBPL Nonsense_Mutation p.W143* 0.13 TCGA-SY-A9G5-01 13 58299227 58299227 C T PCDH17 Silent p.S1093S 0.10 TCGA-SY-A9G5-01 13 73347945 73347945 G C DIS3 Silent p.L372L 0.45 TCGA-SY-A9G5-01 13 73357668 73357668 G A PIBF1 Missense_Mutation p.E21K 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-SY-A9G5-01 13 73636253 73636253 G T KLF5 Missense_Mutation p.Q172H 0.51 tolerated(0.15) probably_damaging(0.948) TCGA-SY-A9G5-01 13 78477360 78477360 C T EDNRB Silent p.T334T 0.12 TCGA-SY-A9G5-01 13 88328195 88328195 C G SLITRK5 Silent p.L184L 0.08 TCGA-SY-A9G5-01 13 96416174 96416174 G C DNAJC3 Missense_Mutation p.E348Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 13 97639687 97639687 G C OXGR1 Missense_Mutation p.I109M 0.10 deleterious(0.03) possibly_damaging(0.491) TCGA-SY-A9G5-01 13 98896844 98896844 G C FARP1 Intron 0.34 TCGA-SY-A9G5-01 13 99481680 99481680 C G DOCK9 Missense_Mutation p.E1593Q 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-SY-A9G5-01 14 102548108 102548108 C A HSP90AA1 Nonsense_Mutation p.E836* 0.18 TCGA-SY-A9G5-01 14 102676342 102676342 A G WDR20 3'UTR 0.21 TCGA-SY-A9G5-01 14 103187659 103187659 C T RCOR1 Silent p.V378V 0.12 TCGA-SY-A9G5-01 14 104209111 104209111 C - PPP1R13B Frame_Shift_Del p.K401Nfs*54 0.18 TCGA-SY-A9G5-01 14 21837929 21837929 C A SUPT16H Nonsense_Mutation p.E204* 0.36 TCGA-SY-A9G5-01 14 21861894 21861894 C T CHD8 Silent p.E2020E 0.19 TCGA-SY-A9G5-01 14 22521099 22521099 C G TRAV21 Silent p.L40L 0.29 TCGA-SY-A9G5-01 14 24839326 24839326 G T NFATC4 Missense_Mutation p.R304L 0.27 deleterious(0.05) possibly_damaging(0.808) TCGA-SY-A9G5-01 14 33014701 33014701 C G AKAP6 Missense_Mutation p.S281C 0.10 tolerated(0.15) benign(0.003) TCGA-SY-A9G5-01 14 35182578 35182578 C G CFL2 Missense_Mutation p.E65Q 0.32 tolerated(0.16) benign(0.019) TCGA-SY-A9G5-01 14 38061574 38061574 T - FOXA1 Frame_Shift_Del p.S139Afs*55 0.10 TCGA-SY-A9G5-01 14 39565175 39565175 C T SEC23A Missense_Mutation p.D50N 0.11 tolerated(0.23) benign(0.007) TCGA-SY-A9G5-01 14 45654484 45654484 C T FANCM Missense_Mutation p.S1527L 0.32 deleterious(0) possibly_damaging(0.874) TCGA-SY-A9G5-01 14 50559341 50559341 C T C14orf183 Silent p.S7S 0.36 TCGA-SY-A9G5-01 14 52471103 52471103 C G C14orf166 Missense_Mutation p.Q202E 0.17 deleterious(0.01) benign(0.09) TCGA-SY-A9G5-01 14 54882625 54882625 G T CDKN3 Missense_Mutation p.G142V 0.17 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G5-01 14 55411117 55411117 G C WDHD1 Nonsense_Mutation p.S1041* 0.13 TCGA-SY-A9G5-01 14 55818244 55818244 G C FBXO34 Missense_Mutation p.G379A 0.21 tolerated(0.26) benign(0.004) TCGA-SY-A9G5-01 14 58949430 58949430 G A KIAA0586 Silent p.P1101P 0.29 TCGA-SY-A9G5-01 14 60581721 60581721 G A PCNXL4 Missense_Mutation p.G66E 0.08 deleterious(0.03) possibly_damaging(0.467) TCGA-SY-A9G5-01 14 60591194 60591194 G A PCNXL4 Missense_Mutation p.V535I 0.10 tolerated(0.58) benign(0.003) TCGA-SY-A9G5-01 14 61442401 61442401 G A TRMT5 Silent p.F412F 0.18 TCGA-SY-A9G5-01 14 61997287 61997287 G A RP11-47I22.4 Missense_Mutation p.E84K 0.16 tolerated(1) benign(0.036) TCGA-SY-A9G5-01 14 62203736 62203736 C G HIF1A Silent p.L410L 0.27 TCGA-SY-A9G5-01 14 64453209 64453209 C T SYNE2 Silent p.F729F 0.25 TCGA-SY-A9G5-01 14 64537372 64537372 G C SYNE2 Missense_Mutation p.E3481Q 0.08 probably_damaging(0.999) TCGA-SY-A9G5-01 14 64954555 64954555 G A ZBTB25 Nonsense_Mutation p.Q132* 0.26 TCGA-SY-A9G5-01 14 67805316 67805316 C G ATP6V1D 3'UTR 0.06 TCGA-SY-A9G5-01 14 67805358 67805358 C A ATP6V1D Nonsense_Mutation p.E242* 0.11 TCGA-SY-A9G5-01 14 67805433 67805433 C G ATP6V1D Missense_Mutation p.E217Q 0.09 tolerated(0.25) benign(0.141) TCGA-SY-A9G5-01 14 68117638 68117638 G C VTI1B 3'UTR 0.30 TCGA-SY-A9G5-01 14 72139072 72139072 C G SIPA1L1 Nonsense_Mutation p.S946* 0.31 TCGA-SY-A9G5-01 14 73459854 73459854 C T ZFYVE1 Silent p.L400L 0.20 TCGA-SY-A9G5-01 14 73614696 73614696 C T PSEN1 5'UTR 0.25 TCGA-SY-A9G5-01 14 73945373 73945373 C G HEATR4 Missense_Mutation p.E1007Q 0.13 tolerated_low_confidence(0.25) benign(0) TCGA-SY-A9G5-01 14 73957824 73957824 G C HEATR4 Intron 0.10 TCGA-SY-A9G5-01 14 73974891 73974891 C T HEATR4 Missense_Mutation p.E610K 0.13 tolerated(0.51) benign(0.006) TCGA-SY-A9G5-01 14 73974898 73974898 C T HEATR4 Silent p.K607K 0.14 TCGA-SY-A9G5-01 14 74769687 74769687 G A ABCD4 5'UTR 0.25 TCGA-SY-A9G5-01 14 75537411 75537411 G C ZC2HC1C Missense_Mutation p.L45F 0.32 deleterious(0.03) benign(0.445) TCGA-SY-A9G5-01 14 77327076 77327076 G C C14orf166B Missense_Mutation p.G382A 0.16 tolerated(0.77) benign(0.008) TCGA-SY-A9G5-01 14 77978532 77978532 G C SPTLC2 3'UTR 0.25 TCGA-SY-A9G5-01 14 81606069 81606069 G A TSHR Missense_Mutation p.E247K 0.18 tolerated(0.07) benign(0.032) TCGA-SY-A9G5-01 14 91007865 91007865 C T TTC7B Silent p.V793V 0.36 TCGA-SY-A9G5-01 14 91007889 91007889 C G TTC7B Missense_Mutation p.K785N 0.23 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 14 92047256 92047256 G A CATSPERB Missense_Mutation p.H1110Y 0.25 tolerated_low_confidence(0.32) benign(0) TCGA-SY-A9G5-01 14 94964125 94964125 G C SERPINA12 Missense_Mutation p.L204V 0.21 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 14 95053761 95053761 G A SERPINA5 Missense_Mutation p.R21H 0.15 tolerated(0.11) benign(0.06) TCGA-SY-A9G5-01 14 99640715 99640715 C A BCL11B Missense_Mutation p.G820C 0.22 deleterious(0) possibly_damaging(0.613) TCGA-SY-A9G5-01 15 25616756 25616756 C T UBE3A Missense_Mutation p.E192K 0.32 tolerated(0.64) benign(0.004) TCGA-SY-A9G5-01 15 27772697 27772697 C T GABRG3 Silent p.F328F 0.15 TCGA-SY-A9G5-01 15 28493829 28493829 G A HERC2 Missense_Mutation p.S1035L 0.15 benign(0.001) TCGA-SY-A9G5-01 15 40254051 40254051 C G EIF2AK4 Missense_Mutation p.F270L 0.21 deleterious(0.01) possibly_damaging(0.876) TCGA-SY-A9G5-01 15 40512951 40512951 C A BUB1B Silent p.L1048L 0.11 TCGA-SY-A9G5-01 15 40750799 40750799 G A BAHD1 Missense_Mutation p.G46S 0.15 tolerated_low_confidence(0.5) benign(0.092) TCGA-SY-A9G5-01 15 41749980 41749980 G A RTF1 Missense_Mutation p.E190K 0.10 deleterious(0.04) benign(0.054) TCGA-SY-A9G5-01 15 41819668 41819668 C T RPAP1 Missense_Mutation p.E522K 0.24 tolerated(0.08) benign(0.008) TCGA-SY-A9G5-01 15 43484981 43484981 C T CCNDBP1 Missense_Mutation p.H301Y 0.18 tolerated(0.64) probably_damaging(0.937) TCGA-SY-A9G5-01 15 43784583 43784583 G A TP53BP1 Nonsense_Mutation p.Q31* 0.10 TCGA-SY-A9G5-01 15 43924968 43924968 G C CATSPER2 Missense_Mutation p.S448C 0.14 deleterious(0.02) possibly_damaging(0.619) TCGA-SY-A9G5-01 15 45439714 45439714 G A DUOX1 Silent p.L802L 0.37 TCGA-SY-A9G5-01 15 48056886 48056886 C T SEMA6D Silent p.I383I 0.13 TCGA-SY-A9G5-01 15 49255228 49255228 G A SHC4 5'UTR 0.14 TCGA-SY-A9G5-01 15 50581767 50581767 C T GABPB1 Missense_Mutation p.D278N 0.37 tolerated(0.07) probably_damaging(0.989) TCGA-SY-A9G5-01 15 51017514 51017514 C T SPPL2A Missense_Mutation p.V385I 0.12 tolerated(0.07) benign(0.123) TCGA-SY-A9G5-01 15 52015735 52015735 C T LYSMD2 3'UTR 0.17 TCGA-SY-A9G5-01 15 55972360 55972360 G C PRTG Missense_Mutation p.L289V 0.12 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 15 56032736 56032736 C G PRTG Missense_Mutation p.E81Q 0.11 tolerated(0.08) possibly_damaging(0.674) TCGA-SY-A9G5-01 15 60742007 60742007 C T NARG2 Missense_Mutation p.E387K 0.17 tolerated(0.15) probably_damaging(0.997) TCGA-SY-A9G5-01 15 62995052 62995052 G A TLN2 Missense_Mutation p.E665K 0.44 tolerated(0.68) benign(0.147) TCGA-SY-A9G5-01 15 66795182 66795182 C T RPL4 Intron 0.08 TCGA-SY-A9G5-01 15 66797743 66797743 C G RPL4 5'Flank 0.15 TCGA-SY-A9G5-01 15 68119375 68119375 C T SKOR1 Silent p.F510F 0.47 TCGA-SY-A9G5-01 15 69561513 69561513 C A GLCE Missense_Mutation p.S595Y 0.10 deleterious(0.02) benign(0.431) TCGA-SY-A9G5-01 15 70358355 70358355 C G TLE3 Missense_Mutation p.R192T 0.11 tolerated(0.09) possibly_damaging(0.608) TCGA-SY-A9G5-01 15 71128682 71128682 C A LARP6 Missense_Mutation p.R121S 0.11 deleterious(0) probably_damaging(0.992) TCGA-SY-A9G5-01 15 73007723 73007723 C T BBS4 Silent p.L104L 0.26 TCGA-SY-A9G5-01 15 83527801 83527801 C A HOMER2 Silent p.L169L 0.13 TCGA-SY-A9G5-01 15 86940688 86940688 C T AGBL1 Silent p.V776V 0.16 TCGA-SY-A9G5-01 15 89865077 89865077 C A POLG Missense_Mutation p.D830Y 0.13 deleterious(0) possibly_damaging(0.732) TCGA-SY-A9G5-01 15 90163011 90163011 C G TICRR Missense_Mutation p.S1031C 0.18 deleterious(0) probably_damaging(0.967) TCGA-SY-A9G5-01 15 91035852 91035852 C G IQGAP1 Missense_Mutation p.L1513V 0.08 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 15 91292826 91292826 G A BLM Missense_Mutation p.D110N 0.15 tolerated(0.26) benign(0.004) TCGA-SY-A9G5-01 15 91543009 91543009 C G VPS33B Missense_Mutation p.D558H 0.31 tolerated(0.06) benign(0.344) TCGA-SY-A9G5-01 15 91573139 91573139 G C AC068831.10 Intron 0.27 TCGA-SY-A9G5-01 16 10846473 10846473 C T NUBP1 Missense_Mutation p.L89F 0.20 deleterious(0) possibly_damaging(0.846) TCGA-SY-A9G5-01 16 10846476 10846476 C G NUBP1 Missense_Mutation p.L90V 0.19 tolerated(0.05) possibly_damaging(0.905) TCGA-SY-A9G5-01 16 16103743 16103743 C G ABCC1 Silent p.L112L 0.23 TCGA-SY-A9G5-01 16 2011284 2011284 G A NDUFB10 Silent p.K87K 0.19 TCGA-SY-A9G5-01 16 21139069 21139069 G C DNAH3 Missense_Mutation p.Q383E 0.23 tolerated(1) benign(0) TCGA-SY-A9G5-01 16 2134683 2134683 C G TSC2 Missense_Mutation p.S1487C 0.35 deleterious(0.04) benign(0.443) TCGA-SY-A9G5-01 16 2159570 2159570 G C PKD1 Silent p.L1866L 0.26 TCGA-SY-A9G5-01 16 21663956 21663956 G C IGSF6 5'UTR 0.11 TCGA-SY-A9G5-01 16 23713554 23713554 C T ERN2 Silent p.L422L 0.14 TCGA-SY-A9G5-01 16 24582291 24582291 G C RBBP6 Missense_Mutation p.D1302H 0.21 deleterious_low_confidence(0) unknown(0) TCGA-SY-A9G5-01 16 24583382 24583382 G C RBBP6 Silent p.L1665L 0.31 TCGA-SY-A9G5-01 16 2498934 2498934 G A CCNF Silent p.V391V 0.32 TCGA-SY-A9G5-01 16 25255545 25255545 C G ZKSCAN2 Missense_Mutation p.E514D 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-SY-A9G5-01 16 25258341 25258341 C G ZKSCAN2 Missense_Mutation p.Q392H 0.31 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 16 30006514 30006514 C G HIRIP3 Missense_Mutation p.D71H 0.16 tolerated(0.05) benign(0.125) TCGA-SY-A9G5-01 16 30128085 30128085 G A MAPK3 Silent p.F348F 0.29 TCGA-SY-A9G5-01 16 30731555 30731555 C G SRCAP Missense_Mutation p.L964V 0.30 unknown(0) TCGA-SY-A9G5-01 16 30732144 30732144 C G SRCAP Nonsense_Mutation p.S1033* 0.24 TCGA-SY-A9G5-01 16 30732201 30732201 C G SRCAP Nonsense_Mutation p.S1052* 0.23 TCGA-SY-A9G5-01 16 30793812 30793812 G C ZNF629 Missense_Mutation p.Q613E 0.42 tolerated(0.47) possibly_damaging(0.622) TCGA-SY-A9G5-01 16 30793987 30793987 G A ZNF629 Silent p.L554L 0.31 TCGA-SY-A9G5-01 16 30794557 30794557 G A ZNF629 Silent p.H364H 0.24 TCGA-SY-A9G5-01 16 30794853 30794853 C T ZNF629 Missense_Mutation p.E266K 0.32 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 16 30977494 30977494 C T SETD1A Silent p.V764V 0.28 TCGA-SY-A9G5-01 16 31072852 31072852 G A ZNF668 Missense_Mutation p.S489L 0.20 tolerated(0.21) probably_damaging(0.943) TCGA-SY-A9G5-01 16 31073241 31073241 G C ZNF668 Missense_Mutation p.F359L 0.27 deleterious(0.01) possibly_damaging(0.652) TCGA-SY-A9G5-01 16 3282436 3282436 C T ZNF200 Missense_Mutation p.E151K 0.16 tolerated(0.17) benign(0.009) TCGA-SY-A9G5-01 16 3299730 3299730 C G MEFV Missense_Mutation p.D321H 0.24 deleterious(0) probably_damaging(0.928) TCGA-SY-A9G5-01 16 3632493 3632493 C A SLX4 Silent p.L1785L 0.12 TCGA-SY-A9G5-01 16 3727762 3727762 G T TRAP1 Intron 0.31 TCGA-SY-A9G5-01 16 47162410 47162410 C G NETO2 Missense_Mutation p.D103H 0.24 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 16 48174661 48174661 G T ABCC12 Silent p.L198L 0.23 TCGA-SY-A9G5-01 16 49669982 49669982 C G ZNF423 Missense_Mutation p.Q1027H 0.09 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 16 55361516 55361516 G C IRX6 Missense_Mutation p.L144F 0.30 tolerated(0.65) benign(0.013) TCGA-SY-A9G5-01 16 55362778 55362778 C T IRX6 Silent p.C296C 0.25 TCGA-SY-A9G5-01 16 56436925 56436925 G C AMFR Missense_Mutation p.L316V 0.32 tolerated(0.07) benign(0.168) TCGA-SY-A9G5-01 16 57550240 57550240 C T CCDC102A Missense_Mutation p.E462K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-SY-A9G5-01 16 57601470 57601470 C T GPR114 Missense_Mutation p.S263L 0.40 deleterious(0.03) probably_damaging(0.957) TCGA-SY-A9G5-01 16 61687688 61687688 C T CDH8 Missense_Mutation p.D742N 0.12 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G5-01 16 61689579 61689579 C T CDH8 Silent p.Q567Q 0.20 TCGA-SY-A9G5-01 16 68104942 68104942 G T DUS2 Missense_Mutation p.W247C 0.31 deleterious(0) probably_damaging(0.984) TCGA-SY-A9G5-01 16 68248323 68248323 G T NFATC3 Intron 0.34 TCGA-SY-A9G5-01 16 69354158 69354158 G A VPS4A Silent p.R245R 0.22 TCGA-SY-A9G5-01 16 69381705 69381705 G C TMED6 Missense_Mutation p.L159V 0.30 deleterious(0.03) probably_damaging(1) TCGA-SY-A9G5-01 16 69381831 69381831 G C TMED6 Missense_Mutation p.Q117E 0.31 tolerated(0.12) benign(0.133) TCGA-SY-A9G5-01 16 70694004 70694004 C G IL34 Missense_Mutation p.P215A 0.25 tolerated_low_confidence(0.51) benign(0.115) TCGA-SY-A9G5-01 16 70817335 70817362 TTACTCCACTCACATTTTGCGAATCTCT - VAC14 Splice_Site p.X230_splice 0.26 TCGA-SY-A9G5-01 16 71736618 71736618 C T PHLPP2 Missense_Mutation p.E101K 0.26 deleterious(0) probably_damaging(0.993) TCGA-SY-A9G5-01 16 75654168 75654168 C G ADAT1 Missense_Mutation p.K78N 0.24 deleterious(0.03) probably_damaging(0.909) TCGA-SY-A9G5-01 16 78005795 78005795 T A VAT1L Missense_Mutation p.L376I 0.30 tolerated(0.3) benign(0.071) TCGA-SY-A9G5-01 16 81031011 81031011 G C CMC2 5'UTR 0.20 TCGA-SY-A9G5-01 16 81397481 81397481 C G GAN Missense_Mutation p.S390C 0.31 deleterious(0) probably_damaging(0.973) TCGA-SY-A9G5-01 16 84125382 84125382 G A MBTPS1 Silent p.L306L 0.26 TCGA-SY-A9G5-01 16 84125440 84125440 G C MBTPS1 Missense_Mutation p.S287C 0.24 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 16 84872125 84872125 C A CRISPLD2 Silent p.V8V 0.35 TCGA-SY-A9G5-01 16 89288576 89288576 G A ZNF778 Silent p.L34L 0.25 TCGA-SY-A9G5-01 16 89289580 89289580 G C ZNF778 Missense_Mutation p.D45H 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-SY-A9G5-01 16 89882287 89882287 C G FANCA Missense_Mutation p.E63Q 0.12 deleterious(0.03) benign(0.403) TCGA-SY-A9G5-01 16 8989549 8989549 C T USP7 Missense_Mutation p.E957K 0.31 tolerated(0.44) benign(0.007) TCGA-SY-A9G5-01 17 10429087 10429087 C G MYH2 Missense_Mutation p.E1432Q 0.27 deleterious(0) probably_damaging(0.92) TCGA-SY-A9G5-01 17 10538232 10538232 C G MYH3 Missense_Mutation p.E1427D 0.35 tolerated(0.08) probably_damaging(0.983) TCGA-SY-A9G5-01 17 14110416 14110416 G C COX10 Missense_Mutation p.R406S 0.21 tolerated(0.59) benign(0.002) TCGA-SY-A9G5-01 17 16075232 16075249 TTCGATTCCAGTGAATCA - NCOR1 In_Frame_Del p.H101_K107delinsQ 0.23 TCGA-SY-A9G5-01 17 16089949 16089949 G A NCOR1 Missense_Mutation p.S54L 0.15 benign(0.022) TCGA-SY-A9G5-01 17 16831069 16831069 G A TBC1D27 RNA 0.19 TCGA-SY-A9G5-01 17 18049377 18049377 C T MYO15A Silent p.L2155L 0.32 TCGA-SY-A9G5-01 17 25967659 25967659 C T LGALS9 Missense_Mutation p.R65W 0.16 deleterious(0.01) probably_damaging(1) TCGA-SY-A9G5-01 17 26094838 26094838 C T NOS2 Missense_Mutation p.R687Q 0.15 tolerated(0.59) benign(0.02) TCGA-SY-A9G5-01 17 26976058 26976058 G A SDF2 Silent p.F195F 0.22 TCGA-SY-A9G5-01 17 27051275 27051275 C G RPL23A 3'UTR 0.18 TCGA-SY-A9G5-01 17 27185991 27185991 C G ERAL1 Missense_Mutation p.L324V 0.23 tolerated(0.14) benign(0.145) TCGA-SY-A9G5-01 17 27822625 27822625 C G TAOK1 Silent p.L293L 0.17 TCGA-SY-A9G5-01 17 27893504 27893504 G A ABHD15 Silent p.L161L 0.16 TCGA-SY-A9G5-01 17 27963465 27963465 C G SSH2 Missense_Mutation p.D568H 0.23 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-SY-A9G5-01 17 28361269 28361269 G C EFCAB5 Missense_Mutation p.D356H 0.18 tolerated(0.08) probably_damaging(0.957) TCGA-SY-A9G5-01 17 28380861 28380861 G A EFCAB5 Missense_Mutation p.R630K 0.17 tolerated(0.37) benign(0.023) TCGA-SY-A9G5-01 17 28417676 28417676 G C EFCAB5 Missense_Mutation p.K1307N 0.19 deleterious(0.01) possibly_damaging(0.502) TCGA-SY-A9G5-01 17 28545270 28545270 G C SLC6A4 Missense_Mutation p.I188M 0.20 deleterious(0.01) possibly_damaging(0.467) TCGA-SY-A9G5-01 17 28548751 28548751 G C SLC6A4 Missense_Mutation p.Q76E 0.12 tolerated(1) benign(0) TCGA-SY-A9G5-01 17 28593929 28593929 G A BLMH Missense_Mutation p.S397L 0.20 deleterious(0) probably_damaging(0.921) TCGA-SY-A9G5-01 17 29231288 29231288 G A TEFM Silent p.I97I 0.15 TCGA-SY-A9G5-01 17 33329015 33329015 G A LIG3 Missense_Mutation p.E856K 0.21 tolerated(0.46) benign(0.013) TCGA-SY-A9G5-01 17 34842530 34842530 C T ZNHIT3 5'UTR 0.07 TCGA-SY-A9G5-01 17 36002141 36002141 G A DDX52 Missense_Mutation p.S95L 0.22 tolerated(0.27) benign(0.002) TCGA-SY-A9G5-01 17 36894649 36894649 G C PCGF2 Missense_Mutation p.A178G 0.15 tolerated(0.19) possibly_damaging(0.694) TCGA-SY-A9G5-01 17 36895052 36895052 C T PCGF2 Missense_Mutation p.D127N 0.43 tolerated(0.1) benign(0.15) TCGA-SY-A9G5-01 17 37026413 37026413 G T LASP1 5'UTR 0.21 TCGA-SY-A9G5-01 17 37687209 37687209 G A CDK12 Silent p.V1371V 0.45 TCGA-SY-A9G5-01 17 3769123 3769123 G A CAMKK1 3'UTR 0.40 TCGA-SY-A9G5-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.24 deleterious(0) probably_damaging(0.994) TCGA-SY-A9G5-01 17 38068640 38068640 G A GSDMB Nonsense_Mutation p.Q116* 0.14 TCGA-SY-A9G5-01 17 38812788 38812788 C G KRT222 Missense_Mutation p.D252H 0.28 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 17 39036141 39036141 C T KRT20 Missense_Mutation p.G281E 0.07 tolerated(0.4) benign(0.005) TCGA-SY-A9G5-01 17 39036391 39036391 C G KRT20 Missense_Mutation p.Q251H 0.11 deleterious(0) probably_damaging(0.937) TCGA-SY-A9G5-01 17 39240579 39240579 C T KRTAP4-7 Missense_Mutation p.R41C 0.17 deleterious(0.01) unknown(0) TCGA-SY-A9G5-01 17 39845206 39845206 C T EIF1 5'UTR 0.45 TCGA-SY-A9G5-01 17 40087031 40087031 G A TTC25 RNA 0.31 TCGA-SY-A9G5-01 17 40267816 40267816 C G KAT2A Missense_Mutation p.E600D 0.13 tolerated(1) benign(0.003) TCGA-SY-A9G5-01 17 4111338 4111338 G A ANKFY1 Nonsense_Mutation p.Q250* 0.30 TCGA-SY-A9G5-01 17 41180715 41180715 G C RND2 3'UTR 0.50 TCGA-SY-A9G5-01 17 41256936 41256936 C T BRCA1 Missense_Mutation p.E84K 0.21 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 17 42117554 42117554 G A LSM12 Missense_Mutation p.S110F 0.23 deleterious(0) possibly_damaging(0.685) TCGA-SY-A9G5-01 17 42284902 42284902 C T UBTF Missense_Mutation p.D697N 0.51 tolerated_low_confidence(0.61) benign(0.002) TCGA-SY-A9G5-01 17 42284917 42284917 C T UBTF Missense_Mutation p.E692K 0.12 tolerated(0.15) benign(0.001) TCGA-SY-A9G5-01 17 42287797 42287797 C G UBTF Missense_Mutation p.E468D 0.27 tolerated(0.14) benign(0.05) TCGA-SY-A9G5-01 17 42287823 42287823 C G UBTF Missense_Mutation p.E460Q 0.27 deleterious(0.02) probably_damaging(0.969) TCGA-SY-A9G5-01 17 43226780 43226780 C G HEXIM1 Missense_Mutation p.Q75E 0.15 tolerated_low_confidence(0.44) benign(0.002) TCGA-SY-A9G5-01 17 43481846 43481846 C T ARHGAP27 Missense_Mutation p.D119N 0.11 tolerated(0.24) benign(0.027) TCGA-SY-A9G5-01 17 43545572 43545572 C G PLEKHM1 Intron 0.29 TCGA-SY-A9G5-01 17 45904438 45904438 G A MRPL10 Missense_Mutation p.H129Y 0.12 tolerated(0.06) benign(0.078) TCGA-SY-A9G5-01 17 46862408 46862408 G A TTLL6 Silent p.F639F 0.16 TCGA-SY-A9G5-01 17 47014389 47014389 C T SNF8 Silent p.R114R 0.10 TCGA-SY-A9G5-01 17 4712420 4712420 C T PLD2 Nonsense_Mutation p.R137* 0.15 TCGA-SY-A9G5-01 17 47590074 47590074 C G NGFR Silent p.L329L 0.07 TCGA-SY-A9G5-01 17 47590092 47590092 C G NGFR Silent p.L335L 0.05 TCGA-SY-A9G5-01 17 47677552 47677552 C T SPOP 3'UTR 0.22 TCGA-SY-A9G5-01 17 48145665 48145665 G T ITGA3 Missense_Mutation p.W220C 0.46 deleterious(0) probably_damaging(0.985) TCGA-SY-A9G5-01 17 48202313 48202313 G A SAMD14 Missense_Mutation p.S4L 0.24 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-SY-A9G5-01 17 48465460 48465460 G A LRRC59 Nonsense_Mutation p.Q155* 0.41 TCGA-SY-A9G5-01 17 48773444 48773444 C T ANKRD40 Missense_Mutation p.E341K 0.19 tolerated(0.06) benign(0.002) TCGA-SY-A9G5-01 17 4891708 4891708 C T INCA1 Missense_Mutation p.E235K 0.50 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-SY-A9G5-01 17 49083589 49083589 C G SPAG9 Missense_Mutation p.L427F 0.12 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 17 53798057 53798057 G C TMEM100 Silent p.L125L 0.07 TCGA-SY-A9G5-01 17 54672146 54672146 G A NOG Missense_Mutation p.E188K 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-SY-A9G5-01 17 54933924 54933924 C T DGKE Missense_Mutation p.L384F 0.11 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 17 56350926 56350926 G A MPO Silent p.I490I 0.19 TCGA-SY-A9G5-01 17 56437549 56437549 G T RNF43 Missense_Mutation p.Q305K 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-SY-A9G5-01 17 56569066 56569066 C T MTMR4 Missense_Mutation p.M1182I 0.14 tolerated(0.5) possibly_damaging(0.643) TCGA-SY-A9G5-01 17 56676606 56676606 G C TEX14 Silent p.L706L 0.11 TCGA-SY-A9G5-01 17 58285486 58285486 C G USP32 Silent p.L953L 0.09 TCGA-SY-A9G5-01 17 59926581 59926581 G C BRIP1 Missense_Mutation p.S139C 0.16 deleterious(0.05) benign(0.412) TCGA-SY-A9G5-01 17 59999151 59999151 G C INTS2 Missense_Mutation p.S165C 0.24 tolerated(0.06) benign(0.012) TCGA-SY-A9G5-01 17 60005126 60005126 G C INTS2 Intron 0.17 TCGA-SY-A9G5-01 17 60472431 60472431 C G EFCAB3 Missense_Mutation p.P176A 0.22 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 17 60472495 60472495 C A EFCAB3 Nonsense_Mutation p.S197* 0.15 TCGA-SY-A9G5-01 17 61843378 61843378 G A CCDC47 Missense_Mutation p.S53F 0.23 tolerated(0.05) benign(0.188) TCGA-SY-A9G5-01 17 62495978 62495978 C A DDX5 3'UTR 0.21 TCGA-SY-A9G5-01 17 62850656 62850656 G A LRRC37A3 3'UTR 0.12 TCGA-SY-A9G5-01 17 62968963 62968963 C G AMZ2P1 RNA 0.15 TCGA-SY-A9G5-01 17 64881205 64881205 G A CACNG5 Missense_Mutation p.D226N 0.11 deleterious(0.01) probably_damaging(0.937) TCGA-SY-A9G5-01 17 65733982 65733982 G A NOL11 Missense_Mutation p.E475K 0.10 tolerated(0.88) benign(0.076) TCGA-SY-A9G5-01 17 66246407 66246407 G C AMZ2 Missense_Mutation p.E27Q 0.21 tolerated(0.34) benign(0.175) TCGA-SY-A9G5-01 17 66537027 66537027 G C FAM20A Silent p.L394L 0.56 TCGA-SY-A9G5-01 17 67102322 67102322 G A ABCA6 Missense_Mutation p.S807L 0.23 tolerated(0.05) benign(0.15) TCGA-SY-A9G5-01 17 6980295 6980295 G A CLEC10A Nonsense_Mutation p.Q66* 0.36 TCGA-SY-A9G5-01 17 71391340 71391340 C G SDK2 Silent p.G1182G 0.15 TCGA-SY-A9G5-01 17 7246713 7246713 C T ACAP1 Silent p.F120F 0.30 TCGA-SY-A9G5-01 17 73035050 73035050 G A ATP5H Missense_Mutation p.H155Y 0.14 deleterious(0.04) benign(0.001) TCGA-SY-A9G5-01 17 73262901 73262901 C G MIF4GD Missense_Mutation p.E238Q 0.19 tolerated(0.05) probably_damaging(0.946) TCGA-SY-A9G5-01 17 73720834 73720834 G C ITGB4 Missense_Mutation p.L17F 0.07 tolerated(0.06) benign(0.439) TCGA-SY-A9G5-01 17 73975073 73975073 C T ACOX1 Missense_Mutation p.E28K 0.05 deleterious(0.02) benign(0.036) TCGA-SY-A9G5-01 17 74158008 74158008 G A RNF157 Silent p.L290L 0.05 TCGA-SY-A9G5-01 17 74287646 74287646 A C QRICH2 Silent p.P888P 0.12 TCGA-SY-A9G5-01 17 74562133 74562133 G C ST6GALNAC2 3'UTR 0.47 TCGA-SY-A9G5-01 17 74562138 74562138 G A ST6GALNAC2 3'UTR 0.45 TCGA-SY-A9G5-01 17 7474885 7474885 C G SENP3 3'UTR 0.30 TCGA-SY-A9G5-01 17 76129545 76129545 C T TMC8 Missense_Mutation p.S197F 0.13 tolerated(0.36) probably_damaging(0.99) TCGA-SY-A9G5-01 17 7680940 7680940 C G DNAH2 Missense_Mutation p.F1745L 0.34 benign(0.003) TCGA-SY-A9G5-01 17 77924273 77924273 G A TBC1D16 Silent p.V398V 0.22 TCGA-SY-A9G5-01 17 78933923 78933923 G A RPTOR Missense_Mutation p.D1175N 0.15 tolerated(0.09) benign(0.287) TCGA-SY-A9G5-01 17 79095059 79095059 G A AATK Silent p.L893L 0.21 TCGA-SY-A9G5-01 17 79495900 79495900 G A FSCN2 Missense_Mutation p.E115K 0.33 deleterious(0.05) possibly_damaging(0.802) TCGA-SY-A9G5-01 17 79660985 79660985 C G HGS Missense_Mutation p.S309C 0.11 deleterious(0) probably_damaging(0.981) TCGA-SY-A9G5-01 17 79671425 79671425 C G SLC25A10 Missense_Mutation p.L76V 0.17 deleterious_low_confidence(0) possibly_damaging(0.594) TCGA-SY-A9G5-01 17 79990275 79990275 G C RAC3 Missense_Mutation p.K16N 0.20 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-SY-A9G5-01 17 80043456 80043456 G A FASN Silent p.L1342L 0.23 TCGA-SY-A9G5-01 17 80788249 80788249 C T ZNF750 Silent p.R647R 0.08 TCGA-SY-A9G5-01 17 81006650 81006650 G C B3GNTL1 Silent p.L24L 0.15 TCGA-SY-A9G5-01 17 81006696 81006696 G C B3GNTL1 Intron 0.08 TCGA-SY-A9G5-01 18 3067371 3067371 C T MYOM1 Silent p.K1649K 0.40 TCGA-SY-A9G5-01 18 30969531 30969531 G A CCDC178 Missense_Mutation p.H61Y 0.25 tolerated(0.44) benign(0.015) TCGA-SY-A9G5-01 18 31318993 31318993 C G ASXL3 Missense_Mutation p.S542C 0.22 possibly_damaging(0.906) TCGA-SY-A9G5-01 18 33800131 33800131 C G MOCOS Missense_Mutation p.I637M 0.29 deleterious(0) probably_damaging(0.981) TCGA-SY-A9G5-01 18 34261425 34261425 C T FHOD3 Missense_Mutation p.S446L 0.36 deleterious_low_confidence(0.03) probably_damaging(0.988) TCGA-SY-A9G5-01 18 3451984 3451984 C G TGIF1 Missense_Mutation p.L3V 0.45 unknown(0) TCGA-SY-A9G5-01 18 3452353 3452353 C T TGIF1 Missense_Mutation p.R126W 0.29 deleterious_low_confidence(0.01) benign(0.124) TCGA-SY-A9G5-01 18 43532377 43532377 T C EPG5 Missense_Mutation p.Q414R 0.10 tolerated(0.19) possibly_damaging(0.888) TCGA-SY-A9G5-01 18 44560542 44560542 G C TCEB3B Missense_Mutation p.S365C 0.43 deleterious(0.05) possibly_damaging(0.869) TCGA-SY-A9G5-01 18 50589740 50589740 G C DCC Missense_Mutation p.E351Q 0.32 deleterious(0.02) probably_damaging(0.912) TCGA-SY-A9G5-01 18 55283166 55283166 G A NARS Silent p.Y45Y 0.29 TCGA-SY-A9G5-01 18 6908972 6908972 G C ARHGAP28 Missense_Mutation p.E523Q 0.25 tolerated(0.8) benign(0.011) TCGA-SY-A9G5-01 18 74617175 74617175 G T ZNF236 Missense_Mutation p.V699L 0.38 deleterious(0.01) possibly_damaging(0.557) TCGA-SY-A9G5-01 18 9337223 9337223 G C TWSG1 5'UTR 0.28 TCGA-SY-A9G5-01 18 9337327 9337327 G T TWSG1 Missense_Mutation p.D34Y 0.23 deleterious(0.02) probably_damaging(0.962) TCGA-SY-A9G5-01 18 9584808 9584808 G C PPP4R1 Missense_Mutation p.P202A 0.44 deleterious(0.04) benign(0.021) TCGA-SY-A9G5-01 19 10505978 10505978 C T CDC37 Missense_Mutation p.D177N 0.14 deleterious(0) possibly_damaging(0.848) TCGA-SY-A9G5-01 19 10531597 10531597 G A PDE4A Missense_Mutation p.E53K 0.19 tolerated_low_confidence(0.3) benign(0.118) TCGA-SY-A9G5-01 19 10675657 10675657 C T KRI1 Silent p.K80K 0.35 TCGA-SY-A9G5-01 19 10935876 10935876 C G DNM2 Missense_Mutation p.I679M 0.10 deleterious(0.01) possibly_damaging(0.562) TCGA-SY-A9G5-01 19 1127632 1127632 C T SBNO2 Missense_Mutation p.D138N 0.23 deleterious_low_confidence(0.01) benign(0.096) TCGA-SY-A9G5-01 19 11512905 11512905 C G RGL3 Missense_Mutation p.E450Q 0.31 deleterious(0) probably_damaging(0.949) TCGA-SY-A9G5-01 19 12858242 12858242 G A ASNA1 Missense_Mutation p.E251K 0.26 deleterious(0) probably_damaging(0.994) TCGA-SY-A9G5-01 19 13065324 13065324 C G GADD45GIP1 Missense_Mutation p.E123Q 0.11 tolerated(0.31) probably_damaging(0.913) TCGA-SY-A9G5-01 19 13910663 13910663 G C ZSWIM4 Missense_Mutation p.D95H 0.13 deleterious(0.01) possibly_damaging(0.814) TCGA-SY-A9G5-01 19 15379772 15379772 G C BRD4 Missense_Mutation p.Q123E 0.17 unknown(0) TCGA-SY-A9G5-01 19 15533800 15533800 G C WIZ 3'UTR 0.39 TCGA-SY-A9G5-01 19 15728930 15728930 C A AD000091.2 5'Flank 0.23 TCGA-SY-A9G5-01 19 1816246 1816246 G C REXO1 Silent p.L1185L 0.33 TCGA-SY-A9G5-01 19 18885712 18885712 C T CRTC1 Silent p.H492H 0.11 TCGA-SY-A9G5-01 19 19616267 19616267 C T GATAD2A Missense_Mutation p.S629L 0.14 deleterious(0) possibly_damaging(0.781) TCGA-SY-A9G5-01 19 2043138 2043138 C T MKNK2 Missense_Mutation p.E160K 0.06 deleterious(0) possibly_damaging(0.639) TCGA-SY-A9G5-01 19 2202730 2202730 C T DOT1L Missense_Mutation p.P247S 0.11 deleterious(0.03) probably_damaging(0.976) TCGA-SY-A9G5-01 19 2206785 2206785 G A DOT1L Missense_Mutation p.R282K 0.10 deleterious(0) possibly_damaging(0.681) TCGA-SY-A9G5-01 19 2214472 2214472 C G DOT1L Silent p.L600L 0.26 TCGA-SY-A9G5-01 19 2252582 2252582 C G JSRP1 Missense_Mutation p.E248Q 0.24 tolerated(0.08) possibly_damaging(0.859) TCGA-SY-A9G5-01 19 2252675 2252675 C T JSRP1 Missense_Mutation p.E217K 0.16 tolerated(0.45) possibly_damaging(0.81) TCGA-SY-A9G5-01 19 2252684 2252684 C T JSRP1 Missense_Mutation p.E214K 0.17 tolerated(0.12) possibly_damaging(0.801) TCGA-SY-A9G5-01 19 23329025 23329025 G C ZNF730 Missense_Mutation p.E393D 0.10 deleterious(0.03) benign(0.043) TCGA-SY-A9G5-01 19 23556629 23556629 G C ZNF91 Silent p.L56L 0.23 TCGA-SY-A9G5-01 19 23837128 23837128 C T ZNF675 Missense_Mutation p.E203K 0.12 tolerated(0.27) possibly_damaging(0.607) TCGA-SY-A9G5-01 19 24097740 24097740 C G ZNF726 5'UTR 0.09 TCGA-SY-A9G5-01 19 30313502 30313502 G C CCNE1 Missense_Mutation p.D368H 0.15 deleterious(0.01) possibly_damaging(0.808) TCGA-SY-A9G5-01 19 33493181 33493181 G A RHPN2 Silent p.F359F 0.14 TCGA-SY-A9G5-01 19 3532434 3532434 C T FZR1 Missense_Mutation p.S343L 0.14 tolerated(0.66) benign(0.279) TCGA-SY-A9G5-01 19 36342508 36342508 G A NPHS1 Missense_Mutation p.T42M 0.47 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 19 36494240 36494240 C T SYNE4 Silent p.%3D 0.25 TCGA-SY-A9G5-01 19 37647136 37647136 G C CTC-454I21.3 Nonsense_Mutation p.S53* 0.16 TCGA-SY-A9G5-01 19 39669239 39669239 C T PAK4 3'UTR 0.44 TCGA-SY-A9G5-01 19 39914508 39914508 C T PLEKHG2 Missense_Mutation p.P912L 0.05 tolerated_low_confidence(1) benign(0) TCGA-SY-A9G5-01 19 40363183 40363183 G A FCGBP Missense_Mutation p.L4963F 0.41 probably_damaging(0.992) TCGA-SY-A9G5-01 19 40434059 40434059 G A FCGBP Silent p.L70L 0.19 TCGA-SY-A9G5-01 19 40521231 40521231 G A ZNF546 Missense_Mutation p.R685K 0.41 tolerated(0.13) benign(0.01) TCGA-SY-A9G5-01 19 41119803 41119803 C T LTBP4 Intron 0.18 TCGA-SY-A9G5-01 19 41515940 41515940 C T CYP2B6 Silent p.L288L 0.22 TCGA-SY-A9G5-01 19 42793046 42793046 C T CIC Missense_Mutation p.S313F 0.28 benign(0.087) TCGA-SY-A9G5-01 19 43866366 43866366 C T CD177 3'UTR 0.19 TCGA-SY-A9G5-01 19 44057802 44057802 G A XRCC1 Missense_Mutation p.H150Y 0.09 tolerated(0.07) benign(0.04) TCGA-SY-A9G5-01 19 45818823 45818823 G C CKM Silent p.L127L 0.12 TCGA-SY-A9G5-01 19 46627565 46627565 C A IGFL3 Missense_Mutation p.W13C 0.18 tolerated(0.27) benign(0.001) TCGA-SY-A9G5-01 19 4700242 4700242 C G DPP9 Missense_Mutation p.D354H 0.19 deleterious(0.01) probably_damaging(0.938) TCGA-SY-A9G5-01 19 47030258 47030258 C T PPP5D1 Silent p.Q53Q 0.22 TCGA-SY-A9G5-01 19 4816629 4816629 G C TICAM1 Silent p.L587L 0.22 TCGA-SY-A9G5-01 19 48603053 48603053 G C PLA2G4C Missense_Mutation p.R118G 0.24 deleterious(0) probably_damaging(0.971) TCGA-SY-A9G5-01 19 48806051 48806051 C A CCDC114 Missense_Mutation p.Q343H 0.13 tolerated(0.54) benign(0.002) TCGA-SY-A9G5-01 19 49340758 49340758 G C PLEKHA4 Missense_Mutation p.P710A 0.11 tolerated_low_confidence(0.06) benign(0.003) TCGA-SY-A9G5-01 19 49344544 49344544 C A PLEKHA4 Missense_Mutation p.M589I 0.17 deleterious(0) benign(0.075) TCGA-SY-A9G5-01 19 49539429 49539429 G A CGB1 Silent p.V47V 0.17 TCGA-SY-A9G5-01 19 50905129 50905129 C G POLD1 Silent p.V137V 0.16 TCGA-SY-A9G5-01 19 51013697 51013697 C G JOSD2 5'UTR 0.24 TCGA-SY-A9G5-01 19 51140527 51140527 C G SYT3 Missense_Mutation p.D48H 0.28 tolerated(0.08) possibly_damaging(0.605) TCGA-SY-A9G5-01 19 51205763 51205763 C T SHANK1 Missense_Mutation p.E570K 0.26 possibly_damaging(0.881) TCGA-SY-A9G5-01 19 51274724 51274724 C T GPR32 Silent p.I289I 0.26 TCGA-SY-A9G5-01 19 52034477 52034477 G T SIGLEC6 Silent p.R122R 0.26 TCGA-SY-A9G5-01 19 52619740 52619740 G A ZNF616 Missense_Mutation p.S226L 0.20 tolerated(0.08) benign(0.302) TCGA-SY-A9G5-01 19 53762739 53762739 G A VN1R2 Missense_Mutation p.D371N 0.25 tolerated(0.12) possibly_damaging(0.585) TCGA-SY-A9G5-01 19 54313926 54313926 C T NLRP12 Silent p.R329R 0.34 TCGA-SY-A9G5-01 19 54544224 54544224 C T VSTM1 Silent p.L234L 0.33 TCGA-SY-A9G5-01 19 54725702 54725702 G A LILRB3 Missense_Mutation p.S219L 0.09 tolerated(0.07) possibly_damaging(0.716) TCGA-SY-A9G5-01 19 55250985 55250985 G A KIR2DL3 Missense_Mutation p.E23K 0.46 tolerated(0.81) benign(0.137) TCGA-SY-A9G5-01 19 55685915 55685915 G A SYT5 Silent p.F310F 0.12 TCGA-SY-A9G5-01 19 56160845 56160845 G C CCDC106 Missense_Mutation p.E70Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 19 56313074 56313074 C T NLRP11 Missense_Mutation p.E679K 0.09 tolerated(0.15) possibly_damaging(0.761) TCGA-SY-A9G5-01 19 5699054 5699054 C T LONP1 Missense_Mutation p.E557K 0.18 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 19 57088108 57088108 C A ZNF470 Nonsense_Mutation p.S104* 0.14 TCGA-SY-A9G5-01 19 57132633 57132633 C G ZNF71 Intron 0.12 TCGA-SY-A9G5-01 19 57286316 57286316 G A ZIM2 Missense_Mutation p.P442S 0.26 tolerated(0.44) benign(0.046) TCGA-SY-A9G5-01 19 57724250 57724250 G C ZNF264 Missense_Mutation p.L595F 0.17 tolerated(0.07) benign(0.004) TCGA-SY-A9G5-01 19 5778717 5778717 C T CATSPERD 3'UTR 0.15 TCGA-SY-A9G5-01 19 5789535 5789535 C T DUS3L Missense_Mutation p.E195K 0.33 tolerated(0.16) benign(0.04) TCGA-SY-A9G5-01 19 58290630 58290630 G T ZNF586 Missense_Mutation p.R225S 0.16 deleterious(0.01) possibly_damaging(0.544) TCGA-SY-A9G5-01 19 58290714 58290714 G C ZNF586 Missense_Mutation p.L253F 0.13 deleterious(0) possibly_damaging(0.511) TCGA-SY-A9G5-01 19 58421200 58421200 C T ZNF417 Missense_Mutation p.R149K 0.25 tolerated(0.31) possibly_damaging(0.688) TCGA-SY-A9G5-01 19 58864524 58864524 G C A1BG Nonsense_Mutation p.S37* 0.22 TCGA-SY-A9G5-01 19 613383 613383 G A HCN2 Missense_Mutation p.E574K 0.25 deleterious(0) possibly_damaging(0.898) TCGA-SY-A9G5-01 19 615985 615985 C T HCN2 Silent p.I727I 0.19 TCGA-SY-A9G5-01 19 7083365 7083365 C T ZNF557 Silent p.F301F 0.13 TCGA-SY-A9G5-01 19 7166374 7166374 C T INSR Missense_Mutation p.C551Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 19 8122788 8122788 G A CCL25 Silent p.L143L 0.25 TCGA-SY-A9G5-01 19 8553643 8553643 G C HNRNPM Missense_Mutation p.E700Q 0.42 tolerated(0.05) possibly_damaging(0.844) TCGA-SY-A9G5-01 19 8609274 8609274 C G MYO1F Missense_Mutation p.Q477H 0.28 tolerated(0.12) benign(0.013) TCGA-SY-A9G5-01 19 9085456 9085456 G C MUC16 Missense_Mutation p.T2120S 0.30 unknown(0) TCGA-SY-A9G5-01 19 9085732 9085732 G C MUC16 Missense_Mutation p.S2028C 0.13 unknown(0) TCGA-SY-A9G5-01 1 103540276 103540276 C G COL11A1 Missense_Mutation p.K183N 0.17 possibly_damaging(0.842) TCGA-SY-A9G5-01 1 10436707 10436707 C T KIF1B 3'UTR 0.34 TCGA-SY-A9G5-01 1 109241802 109241802 G A PRPF38B Silent p.L267L 0.08 TCGA-SY-A9G5-01 1 109394986 109394986 C G AKNAD1 Missense_Mutation p.E101Q 0.22 tolerated(0.33) benign(0.018) TCGA-SY-A9G5-01 1 109715115 109715115 G C KIAA1324 Missense_Mutation p.Q207H 0.30 deleterious(0) possibly_damaging(0.885) TCGA-SY-A9G5-01 1 109860524 109860524 C A SORT1 Missense_Mutation p.D698Y 0.17 deleterious(0.02) benign(0.414) TCGA-SY-A9G5-01 1 1104393 1104393 G A TTLL10 5'Flank 0.33 TCGA-SY-A9G5-01 1 11269465 11269465 C T MTOR Silent p.R1235R 0.24 TCGA-SY-A9G5-01 1 114444391 114444391 C T AP4B1 Missense_Mutation p.G152E 0.25 tolerated(0.51) benign(0.007) TCGA-SY-A9G5-01 1 114483780 114483780 C A HIPK1 Missense_Mutation p.Q259K 0.24 deleterious(0.02) possibly_damaging(0.672) TCGA-SY-A9G5-01 1 115222927 115222927 G T AMPD1 Missense_Mutation p.F273L 0.28 deleterious(0) probably_damaging(0.995) TCGA-SY-A9G5-01 1 11766310 11766310 G A DRAXIN 5'UTR 0.24 TCGA-SY-A9G5-01 1 118449133 118449133 C T GDAP2 Missense_Mutation p.E211K 0.20 deleterious(0.04) benign(0.294) TCGA-SY-A9G5-01 1 118644397 118644397 C G SPAG17 Silent p.R200R 0.29 TCGA-SY-A9G5-01 1 12056237 12056237 G A MFN2 Silent p.V112V 0.22 TCGA-SY-A9G5-01 1 12318035 12318035 G A VPS13D Missense_Mutation p.E329K 0.13 benign(0.001) TCGA-SY-A9G5-01 1 12318110 12318110 G C VPS13D Missense_Mutation p.D354H 0.11 benign(0.424) TCGA-SY-A9G5-01 1 12318152 12318152 G C VPS13D Missense_Mutation p.D368H 0.13 benign(0.191) TCGA-SY-A9G5-01 1 1266858 1266858 G A TAS1R3 Missense_Mutation p.E45K 0.42 tolerated(0.96) benign(0.024) TCGA-SY-A9G5-01 1 12907697 12907697 G C HNRNPCL1 Nonsense_Mutation p.S149* 0.13 TCGA-SY-A9G5-01 1 1333680 1333680 C T CCNL2 Missense_Mutation p.E136K 0.17 deleterious(0) possibly_damaging(0.582) TCGA-SY-A9G5-01 1 14108512 14108512 G C PRDM2 Missense_Mutation p.E1408Q 0.21 unknown(0) TCGA-SY-A9G5-01 1 144931608 144931608 G A PDE4DIP Intron 0.12 TCGA-SY-A9G5-01 1 145115967 145115967 G C SEC22B RNA 0.08 TCGA-SY-A9G5-01 1 148011702 148011702 C A NBPF14 Missense_Mutation p.D521Y 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-SY-A9G5-01 1 149949473 149949473 G A OTUD7B 5'UTR 0.12 TCGA-SY-A9G5-01 1 150246537 150246537 C G C1orf54 Missense_Mutation p.Q32E 0.18 deleterious(0.03) benign(0.032) TCGA-SY-A9G5-01 1 150956770 150956770 C G ANXA9 Missense_Mutation p.S94C 0.11 deleterious(0.01) possibly_damaging(0.868) TCGA-SY-A9G5-01 1 151259584 151259584 C T ZNF687 Missense_Mutation p.L273F 0.10 tolerated(0.72) benign(0.265) TCGA-SY-A9G5-01 1 151508289 151508289 G A CGN Missense_Mutation p.E1038K 0.18 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 1 152059517 152059517 C T TCHHL1 Missense_Mutation p.G214E 0.31 tolerated(0.91) benign(0.011) TCGA-SY-A9G5-01 1 153909176 153909176 C T DENND4B Missense_Mutation p.E761K 0.32 tolerated(0.2) benign(0.067) TCGA-SY-A9G5-01 1 154570399 154570399 C G ADAR Missense_Mutation p.K613N 0.19 deleterious(0) probably_damaging(0.979) TCGA-SY-A9G5-01 1 154960668 154960668 G C FLAD1 Missense_Mutation p.D154H 0.26 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 1 155110558 155110558 G C SLC50A1 Missense_Mutation p.R183T 0.22 tolerated(0.37) benign(0.158) TCGA-SY-A9G5-01 1 155110756 155110756 G C SLC50A1 Nonstop_Mutation p.*222Sext*10 0.24 TCGA-SY-A9G5-01 1 155657886 155657886 G C YY1AP1 Missense_Mutation p.L124V 0.37 tolerated_low_confidence(0.06) benign(0.001) TCGA-SY-A9G5-01 1 155699141 155699141 G T DAP3 Missense_Mutation p.R276I 0.14 deleterious(0.01) benign(0.027) TCGA-SY-A9G5-01 1 155742930 155742930 C T GON4L Missense_Mutation p.E808K 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-SY-A9G5-01 1 155746188 155746188 G A GON4L Missense_Mutation p.L726F 0.13 deleterious(0.01) possibly_damaging(0.844) TCGA-SY-A9G5-01 1 156182942 156182942 C A PMF1 Missense_Mutation p.L46I 0.11 deleterious(0.03) benign(0.374) TCGA-SY-A9G5-01 1 157557276 157557276 C T FCRL4 Missense_Mutation p.E213K 0.31 tolerated(0.1) benign(0.077) TCGA-SY-A9G5-01 1 158812077 158812077 G A MNDA Missense_Mutation p.R45K 0.24 tolerated(0.82) benign(0.114) TCGA-SY-A9G5-01 1 159162423 159162423 C T CADM3 Silent p.I129I 0.27 TCGA-SY-A9G5-01 1 160265889 160265889 C G COPA Missense_Mutation p.E781Q 0.23 tolerated(0.36) benign(0.06) TCGA-SY-A9G5-01 1 160806044 160806044 C G CD244 Missense_Mutation p.E284Q 0.20 tolerated(0.29) benign(0.071) TCGA-SY-A9G5-01 1 161021335 161021335 G A ARHGAP30 Missense_Mutation p.R397W 0.15 tolerated(0.06) probably_damaging(0.918) TCGA-SY-A9G5-01 1 16271205 16271205 C G ZBTB17 Missense_Mutation p.E353Q 0.23 tolerated(0.05) possibly_damaging(0.628) TCGA-SY-A9G5-01 1 16461528 16461528 C G EPHA2 Intron 0.10 TCGA-SY-A9G5-01 1 165398042 165398042 G A RXRG Nonsense_Mutation p.R71* 0.28 TCGA-SY-A9G5-01 1 16774596 16774596 G T NECAP2 Missense_Mutation p.D114Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 1 167802252 167802252 C T ADCY10 Missense_Mutation p.R1189Q 0.13 tolerated(1) benign(0) TCGA-SY-A9G5-01 1 1688011 1688011 C G NADK Missense_Mutation p.E289Q 0.31 deleterious(0.04) possibly_damaging(0.593) TCGA-SY-A9G5-01 1 169836084 169836084 C G SCYL3 Missense_Mutation p.L256F 0.16 deleterious(0) probably_damaging(0.956) TCGA-SY-A9G5-01 1 171310941 171310941 G C FMO4 Missense_Mutation p.R547T 0.21 deleterious(0) benign(0.081) TCGA-SY-A9G5-01 1 171763634 171763634 C G METTL13 Missense_Mutation p.L598V 0.38 deleterious(0) probably_damaging(0.991) TCGA-SY-A9G5-01 1 17313762 17313762 G C ATP13A2 Missense_Mutation p.I954M 0.25 deleterious(0) possibly_damaging(0.602) TCGA-SY-A9G5-01 1 17322647 17322647 C A ATP13A2 Nonsense_Mutation p.E456* 0.07 TCGA-SY-A9G5-01 1 173834524 173834524 C G ZBTB37 5'Flank 0.13 TCGA-SY-A9G5-01 1 173939705 173939705 C G RC3H1 Missense_Mutation p.Q424H 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-SY-A9G5-01 1 175958595 175958595 C G RFWD2 Missense_Mutation p.D584H 0.15 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 1 17727817 17727817 C A PADI6 RNA 0.38 TCGA-SY-A9G5-01 1 17727832 17727832 C G PADI6 RNA 0.39 TCGA-SY-A9G5-01 1 178269183 178269183 G A RASAL2 Silent p.L129L 0.28 TCGA-SY-A9G5-01 1 178420738 178420738 G A RASAL2 Missense_Mutation p.E554K 0.23 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 1 179991854 179991854 G C CEP350 Missense_Mutation p.R1086T 0.14 benign(0.224) TCGA-SY-A9G5-01 1 179993692 179993692 G C CEP350 Missense_Mutation p.K1175N 0.23 possibly_damaging(0.58) TCGA-SY-A9G5-01 1 180243163 180243163 C T LHX4 Intron 0.31 TCGA-SY-A9G5-01 1 180243331 180243331 C T LHX4 Missense_Mutation p.L264F 0.19 tolerated(0.22) probably_damaging(0.958) TCGA-SY-A9G5-01 1 182823204 182823204 C T DHX9 Missense_Mutation p.H173Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 1 183201956 183201956 G C LAMC2 Silent p.L728L 0.26 TCGA-SY-A9G5-01 1 183849901 183849901 G T RGL1 Nonsense_Mutation p.E228* 0.06 TCGA-SY-A9G5-01 1 184677424 184677424 C T EDEM3 Missense_Mutation p.E634K 0.30 deleterious(0.05) possibly_damaging(0.465) TCGA-SY-A9G5-01 1 185094133 185094133 C G TRMT1L Missense_Mutation p.E568Q 0.21 tolerated(0.08) benign(0.215) TCGA-SY-A9G5-01 1 19201018 19201018 G C ALDH4A1 Missense_Mutation p.I506M 0.30 deleterious(0.01) probably_damaging(0.91) TCGA-SY-A9G5-01 1 197070325 197070325 G C ASPM Missense_Mutation p.Q2686E 0.24 tolerated(1) benign(0.062) TCGA-SY-A9G5-01 1 197144231 197144231 G A ZBTB41 Nonsense_Mutation p.Q632* 0.28 TCGA-SY-A9G5-01 1 198231746 198231746 C G NEK7 Missense_Mutation p.I80M 0.24 tolerated(0.45) benign(0.042) TCGA-SY-A9G5-01 1 198828083 198828083 G C MIR181B1 RNA 0.19 TCGA-SY-A9G5-01 1 200534677 200534677 C G KIF14 Missense_Mutation p.R1261T 0.27 deleterious(0.04) benign(0.028) TCGA-SY-A9G5-01 1 201332475 201332475 C T TNNT2 Silent p.R173R 0.21 TCGA-SY-A9G5-01 1 202910602 202910602 C T ADIPOR1 3'UTR 0.13 TCGA-SY-A9G5-01 1 202910677 202910677 C T ADIPOR1 3'UTR 0.15 TCGA-SY-A9G5-01 1 202911169 202911169 C A ADIPOR1 Missense_Mutation p.G328V 0.08 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 1 202911287 202911287 C A ADIPOR1 Nonsense_Mutation p.E289* 0.10 TCGA-SY-A9G5-01 1 203786217 203786217 G C ZC3H11A Missense_Mutation p.D7H 0.17 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 1 205039183 205039183 G A CNTN2 Missense_Mutation p.E809K 0.22 tolerated(0.14) probably_damaging(0.995) TCGA-SY-A9G5-01 1 205592907 205592909 AGC GG ELK4 Frame_Shift_Del p.K34Nfs*21 0.09 TCGA-SY-A9G5-01 1 206241588 206241588 C T C1orf186 Silent p.E67E 0.07 TCGA-SY-A9G5-01 1 207510111 207510111 C G CD55 Silent p.V309V 0.25 TCGA-SY-A9G5-01 1 209969828 209969828 G C IRF6 Missense_Mutation p.Q82E 0.28 tolerated(0.05) possibly_damaging(0.831) TCGA-SY-A9G5-01 1 214828691 214828691 G A CENPF Silent p.E2810E 0.13 TCGA-SY-A9G5-01 1 215408535 215408535 C G KCNK2 3'UTR 0.32 TCGA-SY-A9G5-01 1 21799989 21799989 G A NBPF3 Missense_Mutation p.R284K 0.17 tolerated(1) benign(0) TCGA-SY-A9G5-01 1 220269486 220269486 G C IARS2 Missense_Mutation p.R103T 0.19 tolerated(0.12) possibly_damaging(0.876) TCGA-SY-A9G5-01 1 220379331 220379331 G C RAB3GAP2 Missense_Mutation p.I210M 0.21 deleterious(0) probably_damaging(0.94) TCGA-SY-A9G5-01 1 220440567 220440567 C T RAB3GAP2 Intron 0.29 TCGA-SY-A9G5-01 1 22214528 22214528 G A HSPG2 Silent p.A202A 0.12 TCGA-SY-A9G5-01 1 226030171 226030171 G C EPHX1 Missense_Mutation p.E346Q 0.31 tolerated(0.14) benign(0.236) TCGA-SY-A9G5-01 1 226055718 226055718 G T TMEM63A Silent p.I128I 0.40 TCGA-SY-A9G5-01 1 227441767 227441767 C A CDC42BPA Nonsense_Mutation p.E90* 0.13 TCGA-SY-A9G5-01 1 230829037 230829037 G A COG2 Splice_Site p.X706_splice 0.17 TCGA-SY-A9G5-01 1 231700490 231700490 G A TSNAX Missense_Mutation p.E238K 0.23 tolerated(0.07) benign(0.34) TCGA-SY-A9G5-01 1 235291907 235291907 C G TOMM20 Intron 0.19 TCGA-SY-A9G5-01 1 235292118 235292118 C G TOMM20 5'UTR 0.29 TCGA-SY-A9G5-01 1 246810595 246810595 C G CNST Silent p.L364L 0.19 TCGA-SY-A9G5-01 1 247319826 247319826 G A ZNF124 3'UTR 0.19 TCGA-SY-A9G5-01 1 247587821 247587821 A T NLRP3 Missense_Mutation p.Q359L 0.19 tolerated(0.07) possibly_damaging(0.74) TCGA-SY-A9G5-01 1 24779978 24779978 C G NIPAL3 Silent p.L207L 0.18 TCGA-SY-A9G5-01 1 247875186 247875186 G A OR6F1 Missense_Mutation p.T291M 0.26 deleterious(0.03) possibly_damaging(0.491) TCGA-SY-A9G5-01 1 248512618 248512618 C G OR14C36 Missense_Mutation p.S181C 0.23 deleterious(0) probably_damaging(0.992) TCGA-SY-A9G5-01 1 248512712 248512712 C T OR14C36 Silent p.I212I 0.32 TCGA-SY-A9G5-01 1 248789575 248789575 G A OR2T11 Silent p.L285L 0.24 TCGA-SY-A9G5-01 1 26380414 26380414 C T TRIM63 Missense_Mutation p.E341K 0.14 tolerated(0.81) unknown(0) TCGA-SY-A9G5-01 1 26380432 26380432 C G TRIM63 Missense_Mutation p.E335Q 0.21 tolerated(0.11) unknown(0) TCGA-SY-A9G5-01 1 27087893 27087903 GGCCACCCAGT - ARID1A Frame_Shift_Del p.P729Vfs*84 0.24 TCGA-SY-A9G5-01 1 27101666 27101666 C G ARID1A Missense_Mutation p.Q1650E 0.14 possibly_damaging(0.58) TCGA-SY-A9G5-01 1 32157018 32157018 C T COL16A1 Silent p.P466P 0.17 TCGA-SY-A9G5-01 1 32557560 32557560 G A TMEM39B Missense_Mutation p.S292N 0.29 tolerated(1) probably_damaging(0.951) TCGA-SY-A9G5-01 1 32669915 32669915 G T CCDC28B Nonsense_Mutation p.E154* 0.13 TCGA-SY-A9G5-01 1 33236093 33236093 C T KIAA1522 Missense_Mutation p.S438F 0.17 deleterious(0.01) unknown(0) TCGA-SY-A9G5-01 1 33236767 33236767 C T KIAA1522 Missense_Mutation p.H663Y 0.36 deleterious(0.01) unknown(0) TCGA-SY-A9G5-01 1 33236873 33236873 C T KIAA1522 Missense_Mutation p.S698F 0.28 deleterious_low_confidence(0.04) unknown(0) TCGA-SY-A9G5-01 1 33237349 33237349 C T KIAA1522 Nonsense_Mutation p.Q857* 0.24 TCGA-SY-A9G5-01 1 33237945 33237945 C T KIAA1522 Silent p.L1055L 0.34 TCGA-SY-A9G5-01 1 35570219 35570219 C G ZMYM1 Nonsense_Mutation p.S219* 0.30 TCGA-SY-A9G5-01 1 35578906 35578906 G A ZMYM1 Missense_Mutation p.R492K 0.18 tolerated(0.48) benign(0.145) TCGA-SY-A9G5-01 1 36359375 36359375 C T AGO1 Missense_Mutation p.R205C 0.06 deleterious(0) probably_damaging(0.954) TCGA-SY-A9G5-01 1 37319257 37319257 C G GRIK3 Missense_Mutation p.D391H 0.15 tolerated(0.12) possibly_damaging(0.9) TCGA-SY-A9G5-01 1 38344055 38344055 G A INPP5B Intron 0.21 TCGA-SY-A9G5-01 1 39853090 39853090 C G MACF1 Missense_Mutation p.S2797C 0.22 possibly_damaging(0.866) TCGA-SY-A9G5-01 1 39945490 39945490 G C MACF1 Missense_Mutation p.E5239Q 0.28 possibly_damaging(0.736) TCGA-SY-A9G5-01 1 40362922 40362922 C G MYCL 3'UTR 0.22 TCGA-SY-A9G5-01 1 40362936 40362936 C G MYCL 3'UTR 0.23 TCGA-SY-A9G5-01 1 40363069 40363069 C G MYCL Missense_Mutation p.R387T 0.25 deleterious(0) probably_damaging(0.994) TCGA-SY-A9G5-01 1 40363105 40363105 C G MYCL Missense_Mutation p.R375T 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-SY-A9G5-01 1 44435891 44435891 G A DPH2 Missense_Mutation p.R15Q 0.19 deleterious(0.04) benign(0.205) TCGA-SY-A9G5-01 1 45268966 45268966 C G PLK3 Missense_Mutation p.I325M 0.20 deleterious(0.01) benign(0.072) TCGA-SY-A9G5-01 1 45271194 45271194 C T PLK3 Silent p.L595L 0.25 TCGA-SY-A9G5-01 1 51425515 51425515 G T FAF1 5'UTR 0.41 TCGA-SY-A9G5-01 1 52256649 52256649 C T NRD1 Missense_Mutation p.D1060N 0.12 deleterious(0.04) benign(0.302) TCGA-SY-A9G5-01 1 52962825 52962825 G C ZCCHC11 Missense_Mutation p.L344V 0.24 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 1 59248409 59248409 C T JUN Missense_Mutation p.E112K 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-SY-A9G5-01 1 62253574 62253574 C T INADL Missense_Mutation p.S333L 0.23 tolerated(0.07) benign(0.011) TCGA-SY-A9G5-01 1 63789287 63789287 G A FOXD3 Silent p.Q186Q 0.21 TCGA-SY-A9G5-01 1 64624834 64624834 C G ROR1 Missense_Mutation p.Q449E 0.23 tolerated(0.13) benign(0.005) TCGA-SY-A9G5-01 1 6488465 6488465 C G ESPN Silent p.V158V 0.13 TCGA-SY-A9G5-01 1 6642191 6642191 G C ZBTB48 Missense_Mutation p.R255T 0.38 tolerated(0.36) benign(0.002) TCGA-SY-A9G5-01 1 67794067 67794067 G T IL12RB2 Missense_Mutation p.V222L 0.08 deleterious(0.03) possibly_damaging(0.651) TCGA-SY-A9G5-01 1 68904997 68904997 C T RPE65 Silent p.L245L 0.25 TCGA-SY-A9G5-01 1 70899609 70899609 G A CTH Missense_Mutation p.E326K 0.17 tolerated(1) benign(0.001) TCGA-SY-A9G5-01 1 78430587 78430587 G C FUBP1 Missense_Mutation p.L235V 0.18 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 1 82408771 82408771 C G LPHN2 Missense_Mutation p.F172L 0.19 tolerated(0.09) possibly_damaging(0.79) TCGA-SY-A9G5-01 1 9063498 9063498 G A SLC2A7 Missense_Mutation p.P467L 0.13 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 1 92546037 92546037 G A BTBD8 5'UTR 0.35 TCGA-SY-A9G5-01 1 94337724 94337724 C G DNTTIP2 Silent p.L657L 0.21 TCGA-SY-A9G5-01 1 94639952 94639952 G C ARHGAP29 Missense_Mutation p.Q1087E 0.21 deleterious(0.03) benign(0.034) TCGA-SY-A9G5-01 1 979601 979601 C T AGRN Silent p.V704V 0.31 TCGA-SY-A9G5-01 20 16348087 16348087 G A KIF16B Missense_Mutation p.P1295S 0.28 tolerated_low_confidence(0.33) benign(0.008) TCGA-SY-A9G5-01 20 19654269 19654269 G C SLC24A3 Silent p.L246L 0.27 TCGA-SY-A9G5-01 20 22562626 22562626 G A FOXA2 Silent p.P418P 0.14 TCGA-SY-A9G5-01 20 2411606 2411606 G A TGM6 Missense_Mutation p.E634K 0.29 deleterious(0) probably_damaging(0.969) TCGA-SY-A9G5-01 20 2474192 2474192 C G ZNF343 Missense_Mutation p.Q50H 0.24 tolerated(0.1) benign(0.162) TCGA-SY-A9G5-01 20 24994270 24994270 G A ACSS1 Missense_Mutation p.S494F 0.19 deleterious(0) possibly_damaging(0.707) TCGA-SY-A9G5-01 20 25271212 25271212 G A PYGB Silent p.L641L 0.25 TCGA-SY-A9G5-01 20 3025174 3025174 C T GNRH2 Silent p.L38L 0.13 TCGA-SY-A9G5-01 20 30898670 30898670 C T KIF3B Missense_Mutation p.R364W 0.17 deleterious(0) probably_damaging(0.965) TCGA-SY-A9G5-01 20 31024197 31024197 G C ASXL1 Missense_Mutation p.E1228Q 0.28 deleterious(0.03) benign(0.035) TCGA-SY-A9G5-01 20 32354821 32354821 C T ZNF341 Missense_Mutation p.H456Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 20 32684519 32684519 G A EIF2S2 Silent p.V209V 0.19 TCGA-SY-A9G5-01 20 34560624 34560624 G A CNBD2 Missense_Mutation p.G42E 0.35 deleterious(0.02) probably_damaging(0.97) TCGA-SY-A9G5-01 20 35672517 35672517 G A RBL1 Missense_Mutation p.S581F 0.30 deleterious(0.02) benign(0.299) TCGA-SY-A9G5-01 20 35772210 35772210 C G MROH8 Missense_Mutation p.L442F 0.26 tolerated(0.24) benign(0.203) TCGA-SY-A9G5-01 20 37357252 37357252 C G SLC32A1 Missense_Mutation p.I516M 0.58 deleterious(0.01) possibly_damaging(0.77) TCGA-SY-A9G5-01 20 37580799 37580799 C G FAM83D Nonsense_Mutation p.S495* 0.10 TCGA-SY-A9G5-01 20 37581054 37581054 C T FAM83D Missense_Mutation p.S580L 0.10 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 20 3914600 3914600 G C RNF24 3'UTR 0.32 TCGA-SY-A9G5-01 20 39317500 39317500 G A MAFB 5'UTR 0.18 TCGA-SY-A9G5-01 20 411204 411204 C G RBCK1 3'UTR 0.50 TCGA-SY-A9G5-01 20 42264602 42264602 C G IFT52 Silent p.L320L 0.29 TCGA-SY-A9G5-01 20 43133516 43133516 G A SERINC3 Missense_Mutation p.S267F 0.22 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G5-01 20 43836672 43836672 A G SEMG1 Missense_Mutation p.K245R 0.15 tolerated(1) benign(0.003) TCGA-SY-A9G5-01 20 44452936 44452936 G C TNNC2 Missense_Mutation p.F103L 0.20 tolerated(0.07) benign(0.014) TCGA-SY-A9G5-01 20 44670172 44670172 C T SLC12A5 Silent p.L376L 0.19 TCGA-SY-A9G5-01 20 44672362 44672362 C G SLC12A5 Missense_Mutation p.S466C 0.22 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G5-01 20 44699147 44699147 C T NCOA5 Missense_Mutation p.D23N 0.28 deleterious_low_confidence(0) unknown(0) TCGA-SY-A9G5-01 20 44856220 44856220 C T CDH22 Silent p.T199T 0.15 TCGA-SY-A9G5-01 20 46365664 46365664 C G SULF2 Missense_Mutation p.K66N 0.14 deleterious(0.01) benign(0.248) TCGA-SY-A9G5-01 20 47587656 47587656 G C ARFGEF2 Splice_Site p.X397_splice 0.36 TCGA-SY-A9G5-01 20 47864185 47864185 C G ZNFX1 Missense_Mutation p.Q1792H 0.10 deleterious(0.05) benign(0.069) TCGA-SY-A9G5-01 20 47864404 47864404 C T ZNFX1 Silent p.L1719L 0.10 TCGA-SY-A9G5-01 20 47865058 47865058 C G ZNFX1 Missense_Mutation p.K1501N 0.10 tolerated(0.08) possibly_damaging(0.71) TCGA-SY-A9G5-01 20 47895492 47895492 G A ZNFX1 5'Flank 0.12 TCGA-SY-A9G5-01 20 49575457 49575457 G A MOCS3 Silent p.Q26Q 0.20 TCGA-SY-A9G5-01 20 49575979 49575979 C T MOCS3 Silent p.L200L 0.26 TCGA-SY-A9G5-01 20 49576168 49576168 C A MOCS3 Silent p.I263I 0.23 TCGA-SY-A9G5-01 20 49576537 49576537 G A MOCS3 Silent p.L386L 0.30 TCGA-SY-A9G5-01 20 51870954 51870954 G A TSHZ2 Silent p.P319P 0.20 TCGA-SY-A9G5-01 20 5283238 5283238 C G PROKR2 Missense_Mutation p.K201N 0.19 tolerated(0.43) benign(0.002) TCGA-SY-A9G5-01 20 55092031 55092031 C A RTFDC1 Missense_Mutation p.P211Q 0.20 tolerated(0.91) benign(0.013) TCGA-SY-A9G5-01 20 57599349 57599349 C G TUBB1 Silent p.L289L 0.29 TCGA-SY-A9G5-01 20 60835171 60835171 C T OSBPL2 Nonsense_Mutation p.Q58* 0.18 TCGA-SY-A9G5-01 20 60835177 60835177 C T OSBPL2 Missense_Mutation p.H60Y 0.17 tolerated(0.13) possibly_damaging(0.723) TCGA-SY-A9G5-01 20 60885533 60885533 G T LAMA5 Silent p.I3514I 0.20 TCGA-SY-A9G5-01 20 60885545 60885545 G T LAMA5 Silent p.V3510V 0.22 TCGA-SY-A9G5-01 20 60886015 60886015 G A LAMA5 Silent p.L3408L 0.31 TCGA-SY-A9G5-01 20 61290075 61290075 G A SLCO4A1 Silent p.L281L 0.26 TCGA-SY-A9G5-01 20 61296328 61296328 C G SLCO4A1 Silent p.L388L 0.29 TCGA-SY-A9G5-01 20 61511837 61511837 C T DIDO1 Missense_Mutation p.R1824K 0.19 probably_damaging(0.99) TCGA-SY-A9G5-01 20 61511899 61511899 C A DIDO1 Missense_Mutation p.Q1803H 0.24 possibly_damaging(0.885) TCGA-SY-A9G5-01 21 17172127 17172127 C T USP25 Missense_Mutation p.P203S 0.24 tolerated(0.43) possibly_damaging(0.876) TCGA-SY-A9G5-01 21 19190524 19190524 C G C21orf91 Missense_Mutation p.E38Q 0.16 deleterious(0) probably_damaging(0.98) TCGA-SY-A9G5-01 21 28296384 28296384 C T ADAMTS5 Silent p.L927L 0.16 TCGA-SY-A9G5-01 21 31988928 31988928 C G KRTAP20-1 Nonsense_Mutation p.S52* 0.23 TCGA-SY-A9G5-01 21 34004078 34004078 C G SYNJ1 Missense_Mutation p.E1356Q 0.11 deleterious_low_confidence(0.04) benign(0.046) TCGA-SY-A9G5-01 21 37429433 37429433 G A SETD4 Missense_Mutation p.S48L 0.27 tolerated(0.11) benign(0.006) TCGA-SY-A9G5-01 21 37618316 37618316 C G DOPEY2 Silent p.V1346V 0.28 TCGA-SY-A9G5-01 21 38302561 38302561 G C HLCS Nonsense_Mutation p.S390* 0.22 TCGA-SY-A9G5-01 21 38868431 38868431 G T DYRK1A Missense_Mutation p.M370I 0.10 tolerated(0.13) benign(0.251) TCGA-SY-A9G5-01 21 42622694 42622694 G A BACE2 Missense_Mutation p.D334N 0.21 tolerated(0.06) benign(0.054) TCGA-SY-A9G5-01 21 45537717 45537717 G A PWP2 Missense_Mutation p.E285K 0.28 tolerated(0.16) benign(0.269) TCGA-SY-A9G5-01 21 46077877 46077877 C T KRTAP12-3 5'UTR 0.10 TCGA-SY-A9G5-01 21 46078070 46078070 G A KRTAP12-3 Silent p.V58V 0.23 TCGA-SY-A9G5-01 21 46875847 46875847 G A COL18A1 Missense_Mutation p.E135K 0.15 unknown(0) TCGA-SY-A9G5-01 21 47918525 47918525 C T DIP2A Missense_Mutation p.S145F 0.12 deleterious(0) probably_damaging(0.962) TCGA-SY-A9G5-01 22 17472911 17472911 G A GAB4 Silent p.F110F 0.35 TCGA-SY-A9G5-01 22 18300767 18300767 C T MICAL3 Missense_Mutation p.E1554K 0.20 benign(0.019) TCGA-SY-A9G5-01 22 18640324 18640324 G T USP18 Splice_Site 0.11 TCGA-SY-A9G5-01 22 18846107 18846107 C T BCRP7 RNA 0.11 TCGA-SY-A9G5-01 22 22899256 22899256 G C PRAME 5'UTR 0.10 TCGA-SY-A9G5-01 22 24313522 24313522 G C DDTL Missense_Mutation p.R111T 0.15 deleterious_low_confidence(0.01) benign(0) TCGA-SY-A9G5-01 22 24963979 24963979 G A SNRPD3 Missense_Mutation p.D52N 0.22 tolerated(0.11) benign(0.302) TCGA-SY-A9G5-01 22 29090070 29090070 G A CHEK2 Missense_Mutation p.P514S 0.09 deleterious(0.04) possibly_damaging(0.567) TCGA-SY-A9G5-01 22 29834879 29834879 C T RFPL1 Silent p.L33L 0.07 TCGA-SY-A9G5-01 22 29938894 29938894 C G THOC5 Missense_Mutation p.E136Q 0.28 deleterious(0.02) benign(0.081) TCGA-SY-A9G5-01 22 30887910 30887910 C A SEC14L4 Silent p.V274V 0.19 TCGA-SY-A9G5-01 22 30951443 30951443 C T GAL3ST1 Missense_Mutation p.E257K 0.14 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 22 35723321 35723321 G C TOM1 Missense_Mutation p.E236Q 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-SY-A9G5-01 22 36597993 36597993 G C APOL4 Intron 0.14 TCGA-SY-A9G5-01 22 38016283 38016283 G C GGA1 Missense_Mutation p.K114N 0.19 deleterious(0) probably_damaging(0.912) TCGA-SY-A9G5-01 22 38228752 38228752 C G ANKRD54 Splice_Site p.X241_splice 0.31 TCGA-SY-A9G5-01 22 39413874 39413874 C A APOBEC3C Missense_Mutation p.S93Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 22 39824166 39824166 G A TAB1 Missense_Mutation p.E429K 0.11 tolerated(0.43) benign(0.006) TCGA-SY-A9G5-01 22 42486983 42486983 C T NDUFA6 5'Flank 0.27 TCGA-SY-A9G5-01 22 42998032 42998032 G A POLDIP3 Missense_Mutation p.H161Y 0.28 tolerated(0.75) benign(0.167) TCGA-SY-A9G5-01 22 43524574 43524574 C T BIK Silent p.F111F 0.31 TCGA-SY-A9G5-01 22 45121140 45121140 G C PRR5 Missense_Mutation p.E101Q 0.20 deleterious(0.02) possibly_damaging(0.893) TCGA-SY-A9G5-01 22 50435842 50435842 G A IL17REL Missense_Mutation p.P294L 0.17 tolerated(0.36) benign(0.003) TCGA-SY-A9G5-01 22 50705388 50705388 G A MAPK11 Silent p.L195L 0.09 TCGA-SY-A9G5-01 22 50719915 50719915 G C PLXNB2 Missense_Mutation p.S1179C 0.33 deleterious(0.03) possibly_damaging(0.524) TCGA-SY-A9G5-01 2 10098912 10098912 C G GRHL1 Intron 0.24 TCGA-SY-A9G5-01 2 10105453 10105453 C T GRHL1 Silent p.I351I 0.28 TCGA-SY-A9G5-01 2 102456341 102456341 C G MAP4K4 Silent p.P278P 0.27 TCGA-SY-A9G5-01 2 103141525 103141525 G A SLC9A4 Missense_Mutation p.E621K 0.20 deleterious(0.02) possibly_damaging(0.773) TCGA-SY-A9G5-01 2 103141577 103141577 G A SLC9A4 Missense_Mutation p.S638N 0.20 deleterious(0.04) possibly_damaging(0.765) TCGA-SY-A9G5-01 2 107040642 107040642 C T RGPD3 Missense_Mutation p.D1261N 0.20 deleterious(0.02) benign(0.119) TCGA-SY-A9G5-01 2 109455757 109455757 G A CCDC138 Silent p.Q441Q 0.27 TCGA-SY-A9G5-01 2 113081829 113081829 C T ZC3H6 Missense_Mutation p.P481S 0.23 deleterious(0.03) benign(0.043) TCGA-SY-A9G5-01 2 113088859 113088859 G A ZC3H6 Silent p.L788L 0.39 TCGA-SY-A9G5-01 2 113416425 113416425 G A SLC20A1 Missense_Mutation p.E268K 0.34 tolerated(0.27) benign(0.099) TCGA-SY-A9G5-01 2 113416656 113416656 G T SLC20A1 Missense_Mutation p.D345Y 0.16 deleterious(0.03) possibly_damaging(0.625) TCGA-SY-A9G5-01 2 113416667 113416667 G T SLC20A1 Silent p.V348V 0.13 TCGA-SY-A9G5-01 2 11356292 11356292 C T ROCK2 Missense_Mutation p.E485K 0.24 deleterious(0.04) benign(0.392) TCGA-SY-A9G5-01 2 113672834 113672834 G C IL37 Intron 0.31 TCGA-SY-A9G5-01 2 1204827 1204827 G T SNTG2 Silent p.P210P 0.08 TCGA-SY-A9G5-01 2 121106957 121106957 G A INHBB Missense_Mutation p.R244Q 0.13 deleterious(0.05) probably_damaging(0.99) TCGA-SY-A9G5-01 2 121742197 121742197 G A GLI2 Missense_Mutation p.E612K 0.25 deleterious(0.02) benign(0.345) TCGA-SY-A9G5-01 2 128051122 128051122 C T ERCC3 Silent p.L67L 0.23 TCGA-SY-A9G5-01 2 128051265 128051265 C T ERCC3 Missense_Mutation p.E20K 0.20 tolerated(0.17) benign(0.014) TCGA-SY-A9G5-01 2 131520092 131520092 G C AMER3 Missense_Mutation p.K149N 0.15 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 2 136073068 136073068 C T ZRANB3 Missense_Mutation p.R237K 0.16 tolerated(0.15) benign(0.392) TCGA-SY-A9G5-01 2 136566140 136566140 C G LCT Missense_Mutation p.W1259C 0.33 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 2 138163189 138163189 C G THSD7B Nonsense_Mutation p.S836* 0.26 TCGA-SY-A9G5-01 2 138163373 138163373 C G THSD7B Silent p.L897L 0.29 TCGA-SY-A9G5-01 2 141299423 141299423 C G LRP1B Missense_Mutation p.D2438H 0.21 possibly_damaging(0.861) TCGA-SY-A9G5-01 2 153484987 153484987 G A FMNL2 Silent p.Q780Q 0.18 TCGA-SY-A9G5-01 2 157186597 157186597 G C NR4A2 Missense_Mutation p.F34L 0.20 tolerated(1) benign(0.006) TCGA-SY-A9G5-01 2 158115799 158115799 C G GALNT5 Missense_Mutation p.S402C 0.28 deleterious(0.04) benign(0.213) TCGA-SY-A9G5-01 2 158443804 158443804 G C ACVR1C Missense_Mutation p.P67A 0.21 tolerated(0.47) possibly_damaging(0.484) TCGA-SY-A9G5-01 2 159490710 159490710 G C PKP4 Missense_Mutation p.E491Q 0.26 deleterious(0.02) possibly_damaging(0.756) TCGA-SY-A9G5-01 2 16086130 16086130 G A MYCN Missense_Mutation p.E436K 0.28 deleterious(0.03) benign(0.012) TCGA-SY-A9G5-01 2 163200725 163200725 G A GCA 5'UTR 0.13 TCGA-SY-A9G5-01 2 166221672 166221672 C T SCN2A Missense_Mutation p.S1140L 0.31 tolerated(0.13) benign(0.067) TCGA-SY-A9G5-01 2 170665054 170665054 G C SSB Missense_Mutation p.R206T 0.22 deleterious(0.02) benign(0.199) TCGA-SY-A9G5-01 2 171871390 171871390 C T TLK1 Silent p.L435L 0.14 TCGA-SY-A9G5-01 2 174940071 174940071 C T OLA1 3'UTR 0.27 TCGA-SY-A9G5-01 2 175629171 175629171 C T CHRNA1 5'UTR 0.27 TCGA-SY-A9G5-01 2 179296818 179296818 C G PRKRA 3'UTR 0.31 TCGA-SY-A9G5-01 2 179425604 179425604 C G TTN Missense_Mutation p.D28419H 0.29 TCGA-SY-A9G5-01 2 18112265 18112265 C T KCNS3 5'UTR 0.33 TCGA-SY-A9G5-01 2 182423376 182423376 C G CERKL Missense_Mutation p.R272T 0.19 deleterious(0) probably_damaging(0.955) TCGA-SY-A9G5-01 2 186697919 186697919 G T FSIP2 Missense_Mutation p.R6986I 0.10 benign(0.066) TCGA-SY-A9G5-01 2 189859048 189859048 G A COL3A1 Missense_Mutation p.R428Q 0.23 unknown(0) TCGA-SY-A9G5-01 2 198265453 198265453 C T SF3B1 Missense_Mutation p.E902K 0.33 deleterious(0.01) probably_damaging(0.926) TCGA-SY-A9G5-01 2 198334798 198334798 C G COQ10B Missense_Mutation p.S151C 0.17 deleterious(0.05) probably_damaging(0.998) TCGA-SY-A9G5-01 2 201371598 201371598 G C KCTD18 Missense_Mutation p.L48V 0.16 tolerated(0.12) possibly_damaging(0.452) TCGA-SY-A9G5-01 2 201436845 201436845 G C SGOL2 Missense_Mutation p.L592F 0.23 deleterious(0.05) probably_damaging(0.922) TCGA-SY-A9G5-01 2 206165436 206165436 G C PARD3B Missense_Mutation p.D728H 0.21 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 2 206165448 206165448 G A PARD3B Missense_Mutation p.E732K 0.22 deleterious(0.02) possibly_damaging(0.828) TCGA-SY-A9G5-01 2 206166611 206166611 G A PARD3B Intron 0.40 TCGA-SY-A9G5-01 2 209188991 209188991 C G PIKFYVE Silent p.V772V 0.11 TCGA-SY-A9G5-01 2 21230426 21230426 C G APOB Missense_Mutation p.G3105A 0.23 benign(0.003) TCGA-SY-A9G5-01 2 214794833 214794833 C G SPAG16 Nonsense_Mutation p.S455* 0.16 TCGA-SY-A9G5-01 2 215815801 215815801 G A ABCA12 Silent p.F2218F 0.27 TCGA-SY-A9G5-01 2 215818726 215818726 C G ABCA12 Missense_Mutation p.D2167H 0.12 deleterious(0.04) probably_damaging(0.989) TCGA-SY-A9G5-01 2 215882815 215882815 C G ABCA12 Missense_Mutation p.E567Q 0.09 tolerated(0.43) benign(0.003) TCGA-SY-A9G5-01 2 217311861 217311861 C T SMARCAL1 Missense_Mutation p.R611C 0.14 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 2 218712610 218712610 G A TNS1 Missense_Mutation p.S752F 0.37 tolerated(0.27) benign(0.002) TCGA-SY-A9G5-01 2 220353257 220353257 C T SPEG Silent p.I2632I 0.10 TCGA-SY-A9G5-01 2 224743398 224743398 G A WDFY1 Missense_Mutation p.S408F 0.48 deleterious_low_confidence(0) benign(0.425) TCGA-SY-A9G5-01 2 228119399 228119399 G C COL4A3 Missense_Mutation p.E286Q 0.10 possibly_damaging(0.874) TCGA-SY-A9G5-01 2 231973559 231973559 G C HTR2B Nonsense_Mutation p.S373* 0.13 TCGA-SY-A9G5-01 2 24118813 24118813 C T ATAD2B Missense_Mutation p.D82N 0.28 deleterious_low_confidence(0.05) benign(0.101) TCGA-SY-A9G5-01 2 24118828 24118828 C G ATAD2B Missense_Mutation p.D77H 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-SY-A9G5-01 2 241570080 241570080 G C GPR35 Silent p.L268L 0.10 TCGA-SY-A9G5-01 2 24469142 24469142 C T ITSN2 Missense_Mutation p.E1145K 0.29 deleterious(0.01) unknown(0) TCGA-SY-A9G5-01 2 25463215 25463215 C T DNMT3A Missense_Mutation p.A760T 0.20 deleterious(0.04) possibly_damaging(0.859) TCGA-SY-A9G5-01 2 25965178 25965178 G A ASXL2 Missense_Mutation p.S1343F 0.29 deleterious(0) probably_damaging(0.968) TCGA-SY-A9G5-01 2 26712113 26712113 G C OTOF Missense_Mutation p.F337L 0.15 deleterious(0.02) benign(0.047) TCGA-SY-A9G5-01 2 27461907 27461907 C A CAD Intron 0.20 TCGA-SY-A9G5-01 2 27607947 27607947 C G PPM1G Missense_Mutation p.E140Q 0.28 deleterious(0.01) benign(0.403) TCGA-SY-A9G5-01 2 27825369 27825369 G A ZNF512 Missense_Mutation p.E237K 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-SY-A9G5-01 2 28616587 28616587 C T FOSL2 5'UTR 0.16 TCGA-SY-A9G5-01 2 29754908 29754908 C T ALK Missense_Mutation p.E343K 0.30 tolerated(0.36) benign(0.371) TCGA-SY-A9G5-01 2 32339758 32339758 C A SPAST Nonsense_Mutation p.S245* 0.16 TCGA-SY-A9G5-01 2 33359724 33359724 C G LTBP1 Intron 0.45 TCGA-SY-A9G5-01 2 37455359 37455359 C T CEBPZ Missense_Mutation p.R326K 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-SY-A9G5-01 2 43452198 43452198 C A ZFP36L2 Nonsense_Mutation p.E249* 0.24 TCGA-SY-A9G5-01 2 43452225 43452225 C T ZFP36L2 Missense_Mutation p.D240N 0.23 tolerated(0.16) benign(0.094) TCGA-SY-A9G5-01 2 43452313 43452313 C T ZFP36L2 Silent p.P210P 0.28 TCGA-SY-A9G5-01 2 43452456 43452456 C T ZFP36L2 Missense_Mutation p.E163K 0.33 deleterious(0) probably_damaging(0.974) TCGA-SY-A9G5-01 2 43452597 43452597 C A ZFP36L2 Nonsense_Mutation p.E116* 0.19 TCGA-SY-A9G5-01 2 44041647 44041647 G A ABCG5 Silent p.V577V 0.29 TCGA-SY-A9G5-01 2 46070185 46070185 C G PRKCE Nonsense_Mutation p.S132* 0.23 TCGA-SY-A9G5-01 2 46739523 46739523 C G ATP6V1E2 Missense_Mutation p.E110Q 0.19 tolerated(0.52) benign(0.009) TCGA-SY-A9G5-01 2 46739597 46739597 C T ATP6V1E2 Missense_Mutation p.R85K 0.28 tolerated(1) benign(0.006) TCGA-SY-A9G5-01 2 46739650 46739650 C G ATP6V1E2 Missense_Mutation p.Q67H 0.27 deleterious(0.05) benign(0.334) TCGA-SY-A9G5-01 2 48046149 48046149 C T FBXO11 Silent p.V622V 0.22 TCGA-SY-A9G5-01 2 49195962 49195962 C T FSHR Silent p.K243K 0.18 TCGA-SY-A9G5-01 2 50779936 50779936 G C NRXN1 Silent p.L556L 0.05 TCGA-SY-A9G5-01 2 54856386 54856386 C T SPTBN1 Silent p.I705I 0.18 TCGA-SY-A9G5-01 2 61308605 61308605 C G KIAA1841 Nonsense_Mutation p.S230* 0.24 TCGA-SY-A9G5-01 2 62067078 62067078 C G FAM161A Missense_Mutation p.R354P 0.07 tolerated(0.23) benign(0.076) TCGA-SY-A9G5-01 2 62067310 62067310 C G FAM161A Missense_Mutation p.E277Q 0.10 deleterious(0) probably_damaging(0.962) TCGA-SY-A9G5-01 2 62067382 62067382 C G FAM161A Missense_Mutation p.E253Q 0.05 tolerated(0.15) probably_damaging(0.944) TCGA-SY-A9G5-01 2 63832525 63832525 G A MDH1 Missense_Mutation p.E281K 0.17 tolerated(0.27) benign(0.007) TCGA-SY-A9G5-01 2 68358351 68358351 C G WDR92 3'UTR 0.28 TCGA-SY-A9G5-01 2 69472646 69472646 C T ANTXR1 3'UTR 0.21 TCGA-SY-A9G5-01 2 70187884 70187884 G A ASPRV1 Silent p.L313L 0.23 TCGA-SY-A9G5-01 2 73651767 73651767 C T ALMS1 Missense_Mutation p.S325L 0.12 benign(0.005) TCGA-SY-A9G5-01 2 74185961 74185961 C G DGUOK 3'UTR 0.16 TCGA-SY-A9G5-01 2 74372381 74372381 C G BOLA3 Missense_Mutation p.R35T 0.30 deleterious(0.01) benign(0.034) TCGA-SY-A9G5-01 2 88082507 88082507 C T RGPD2 Missense_Mutation p.E1346K 0.20 deleterious(0) possibly_damaging(0.452) TCGA-SY-A9G5-01 2 89309936 89309936 C T IGKV1-9 Missense_Mutation p.A7T 0.24 tolerated(0.5) benign(0.002) TCGA-SY-A9G5-01 2 90249329 90249329 C T IGKV1D-43 Silent p.L95L 0.22 TCGA-SY-A9G5-01 2 95481407 95481407 G A ANKRD20A8P RNA 0.19 TCGA-SY-A9G5-01 2 9663468 9663468 C G ADAM17 Splice_Site p.X252_splice 0.21 TCGA-SY-A9G5-01 2 96780639 96780639 G A ADRA2B Missense_Mutation p.S417L 0.17 deleterious(0.02) benign(0.02) TCGA-SY-A9G5-01 2 9725303 9725303 G C YWHAQ 3'UTR 0.70 TCGA-SY-A9G5-01 3 11071036 11071036 C T SLC6A1 Nonsense_Mutation p.Q441* 0.24 TCGA-SY-A9G5-01 3 111263975 111263975 G C CD96 Missense_Mutation p.Q48H 0.10 tolerated(0.11) benign(0.026) TCGA-SY-A9G5-01 3 111264027 111264027 G C CD96 Missense_Mutation p.D66H 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-SY-A9G5-01 3 112732249 112732249 C T C3orf17 Missense_Mutation p.E115K 0.22 tolerated(0.66) benign(0.019) TCGA-SY-A9G5-01 3 11300813 11300813 G A HRH1 Silent p.L30L 0.23 TCGA-SY-A9G5-01 3 118621626 118621626 G C IGSF11 Missense_Mutation p.S346C 0.26 tolerated(0.13) probably_damaging(0.962) TCGA-SY-A9G5-01 3 119427466 119427466 G C MAATS1 Missense_Mutation p.E130Q 0.25 tolerated(0.42) benign(0.142) TCGA-SY-A9G5-01 3 12458487 12458487 C T PPARG Silent p.L368L 0.40 TCGA-SY-A9G5-01 3 126153195 126153195 G C CCDC37 Missense_Mutation p.E533D 0.30 deleterious(0) possibly_damaging(0.752) TCGA-SY-A9G5-01 3 126423120 126423120 C G CHCHD6 5'UTR 0.21 TCGA-SY-A9G5-01 3 128181595 128181595 G A DNAJB8 Missense_Mutation p.S165L 0.17 tolerated(0.07) possibly_damaging(0.603) TCGA-SY-A9G5-01 3 129389534 129389534 C T TMCC1 Missense_Mutation p.D384N 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-SY-A9G5-01 3 131102278 131102278 G A NUDT16 3'UTR 0.45 TCGA-SY-A9G5-01 3 137981252 137981252 C A NME9 3'UTR 0.27 TCGA-SY-A9G5-01 3 138665358 138665358 C G FOXL2 Missense_Mutation p.E69D 0.23 tolerated(0.18) benign(0.033) TCGA-SY-A9G5-01 3 142680996 142680996 G C PAQR9 3'UTR 0.18 TCGA-SY-A9G5-01 3 145912944 145912944 C T PLSCR4 Missense_Mutation p.M304I 0.43 tolerated(0.2) probably_damaging(0.91) TCGA-SY-A9G5-01 3 148930274 148930274 G A CP Missense_Mutation p.H120Y 0.08 deleterious(0) probably_damaging(0.981) TCGA-SY-A9G5-01 3 153840296 153840296 C T ARHGEF26 Missense_Mutation p.S172L 0.26 tolerated_low_confidence(0.09) benign(0.003) TCGA-SY-A9G5-01 3 153972506 153972506 C T ARHGEF26 Intron 0.29 TCGA-SY-A9G5-01 3 153972586 153972586 G A ARHGEF26 Missense_Mutation p.V816I 0.09 deleterious(0) benign(0.243) TCGA-SY-A9G5-01 3 15455531 15455531 C T METTL6 Missense_Mutation p.D224N 0.38 tolerated(0.41) benign(0.004) TCGA-SY-A9G5-01 3 155311786 155311786 C T PLCH1 Silent p.L126L 0.09 TCGA-SY-A9G5-01 3 15731548 15731548 C T ANKRD28 Silent p.K617K 0.14 TCGA-SY-A9G5-01 3 158289107 158289107 C T MLF1 5'UTR 0.27 TCGA-SY-A9G5-01 3 158970564 158970564 C G IQCJ-SCHIP1 Silent p.L41L 0.30 TCGA-SY-A9G5-01 3 160155934 160155934 G A TRIM59 Silent p.L346L 0.22 TCGA-SY-A9G5-01 3 172070670 172070670 C T FNDC3B Silent p.V864V 0.11 TCGA-SY-A9G5-01 3 172165939 172165939 C T GHSR Missense_Mutation p.D89N 0.13 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 3 178937410 178937410 G A PIK3CA Missense_Mutation p.E600K 0.28 deleterious(0) possibly_damaging(0.869) TCGA-SY-A9G5-01 3 182810219 182810219 C T MCCC1 Missense_Mutation p.R84K 0.25 tolerated(0.41) benign(0.019) TCGA-SY-A9G5-01 3 184019342 184019342 C T PSMD2 Silent p.I125I 0.17 TCGA-SY-A9G5-01 3 184019710 184019710 C A PSMD2 Silent p.L185L 0.21 TCGA-SY-A9G5-01 3 184019842 184019842 C T PSMD2 Silent p.V229V 0.22 TCGA-SY-A9G5-01 3 184298342 184298342 A - EPHB3 Frame_Shift_Del p.D776Tfs*35 0.12 TCGA-SY-A9G5-01 3 188925322 188925322 C G TPRG1 Nonsense_Mutation p.S50* 0.20 TCGA-SY-A9G5-01 3 189608650 189608650 G C TP63 Missense_Mutation p.Q575H 0.24 tolerated(0.75) probably_damaging(0.996) TCGA-SY-A9G5-01 3 193120596 193120596 G A ATP13A4 Nonsense_Mutation p.Q1146* 0.31 TCGA-SY-A9G5-01 3 194180578 194180578 C G ATP13A3 Missense_Mutation p.E116D 0.10 tolerated(0.36) benign(0.042) TCGA-SY-A9G5-01 3 194181396 194181396 C T ATP13A3 Silent p.L72L 0.22 TCGA-SY-A9G5-01 3 195711447 195711447 G C SDHAP1 RNA 0.12 TCGA-SY-A9G5-01 3 32030933 32030933 G C ZNF860 Missense_Mutation p.R121T 0.16 tolerated(0.16) benign(0.017) TCGA-SY-A9G5-01 3 32031152 32031152 G C ZNF860 Missense_Mutation p.R194T 0.11 tolerated(0.06) possibly_damaging(0.628) TCGA-SY-A9G5-01 3 32031383 32031383 G A ZNF860 Missense_Mutation p.R271Q 0.13 tolerated(0.19) benign(0.019) TCGA-SY-A9G5-01 3 33194455 33194455 G A SUSD5 Missense_Mutation p.P557S 0.12 deleterious(0.03) benign(0.382) TCGA-SY-A9G5-01 3 36779471 36779471 C T DCLK3 Missense_Mutation p.R227K 0.30 deleterious(0.03) benign(0.002) TCGA-SY-A9G5-01 3 37860505 37860505 G T ITGA9 3'UTR 0.17 TCGA-SY-A9G5-01 3 38052002 38052002 G C PLCD1 Missense_Mutation p.S302W 0.34 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 3 38627479 38627479 C G SCN5A Missense_Mutation p.K830N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-SY-A9G5-01 3 38645469 38645469 C G SCN5A Missense_Mutation p.D542H 0.16 tolerated(0.07) possibly_damaging(0.894) TCGA-SY-A9G5-01 3 41961251 41961251 C T ULK4 Missense_Mutation p.D201N 0.12 deleterious(0) probably_damaging(0.99) TCGA-SY-A9G5-01 3 42916726 42916726 C T CYP8B1 Missense_Mutation p.D195N 0.16 deleterious(0.03) probably_damaging(0.943) TCGA-SY-A9G5-01 3 42916738 42916738 C T CYP8B1 Missense_Mutation p.D191N 0.19 tolerated(0.49) benign(0.129) TCGA-SY-A9G5-01 3 47147552 47147552 G A SETD2 Nonsense_Mutation p.R1592* 0.18 TCGA-SY-A9G5-01 3 48360988 48360988 G C SPINK8 Missense_Mutation p.L80V 0.32 deleterious(0.02) possibly_damaging(0.772) TCGA-SY-A9G5-01 3 48508355 48508355 G C TREX1 Missense_Mutation p.D156H 0.37 deleterious(0) possibly_damaging(0.893) TCGA-SY-A9G5-01 3 49336023 49336023 C A USP4 Nonsense_Mutation p.E520* 0.14 TCGA-SY-A9G5-01 3 49723780 49723780 G A MST1 Nonsense_Mutation p.Q328* 0.27 TCGA-SY-A9G5-01 3 49893848 49893848 G A TRAIP Silent p.F13F 0.13 TCGA-SY-A9G5-01 3 50098640 50098640 G C RBM6 Missense_Mutation p.R780P 0.16 deleterious(0.03) benign(0.081) TCGA-SY-A9G5-01 3 50334454 50334454 C A NAT6 Silent p.L169L 0.26 TCGA-SY-A9G5-01 3 51749538 51749538 C G GRM2 Silent p.L583L 0.34 TCGA-SY-A9G5-01 3 51990758 51990758 G A GPR62 Missense_Mutation p.E364K 0.35 tolerated(0.06) benign(0.292) TCGA-SY-A9G5-01 3 51990760 51990760 G A GPR62 Silent p.E364E 0.32 TCGA-SY-A9G5-01 3 52409983 52409983 G A DNAH1 Missense_Mutation p.G2391E 0.21 benign(0.411) TCGA-SY-A9G5-01 3 52475885 52475885 C A SEMA3G Missense_Mutation p.R167L 0.36 deleterious(0.03) probably_damaging(0.984) TCGA-SY-A9G5-01 3 52505832 52505832 G C NISCH Missense_Mutation p.E138Q 0.28 deleterious(0) probably_damaging(0.946) TCGA-SY-A9G5-01 3 52538105 52538105 G A STAB1 Missense_Mutation p.E362K 0.25 deleterious(0.03) possibly_damaging(0.852) TCGA-SY-A9G5-01 3 52720810 52720810 G C GNL3 Missense_Mutation p.M13I 0.08 deleterious(0.02) benign(0.418) TCGA-SY-A9G5-01 3 52721524 52721524 G T GNL3 Nonsense_Mutation p.E73* 0.23 TCGA-SY-A9G5-01 3 53125850 53125850 G A RFT1 3'UTR 0.18 TCGA-SY-A9G5-01 3 53213712 53213712 G A PRKCD Missense_Mutation p.E79K 0.13 tolerated(0.87) benign(0.119) TCGA-SY-A9G5-01 3 53275201 53275201 C T TKT Missense_Mutation p.E96K 0.30 deleterious(0.02) possibly_damaging(0.877) TCGA-SY-A9G5-01 3 53837570 53837570 C T CACNA1D Silent p.Y1872Y 0.04 TCGA-SY-A9G5-01 3 57582894 57582894 G A ARF4 5'UTR 0.20 TCGA-SY-A9G5-01 3 62357989 62357989 G C FEZF2 Silent p.L185L 0.33 TCGA-SY-A9G5-01 3 70014133 70014133 C G MITF Missense_Mutation p.H433D 0.26 tolerated(0.51) benign(0.098) TCGA-SY-A9G5-01 3 85932457 85932457 G C CADM2 Missense_Mutation p.R78S 0.12 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 3 96963096 96963096 C T EPHA6 Missense_Mutation p.P524L 0.07 tolerated(0.41) benign(0.234) TCGA-SY-A9G5-01 3 97868373 97868373 C T OR5H14 Silent p.V48V 0.25 TCGA-SY-A9G5-01 4 104057495 104057495 C G CENPE Missense_Mutation p.E2109Q 0.14 possibly_damaging(0.625) TCGA-SY-A9G5-01 4 104066237 104066237 C T CENPE Silent p.L1609L 0.25 TCGA-SY-A9G5-01 4 107092422 107092422 C G TBCK Missense_Mutation p.D689H 0.19 deleterious(0.01) probably_damaging(0.946) TCGA-SY-A9G5-01 4 123095791 123095791 G A KIAA1109 Missense_Mutation p.E93K 0.33 benign(0.009) TCGA-SY-A9G5-01 4 123159370 123159370 C T KIAA1109 Missense_Mutation p.S1233L 0.25 possibly_damaging(0.904) TCGA-SY-A9G5-01 4 126239265 126239265 C T FAT4 Nonsense_Mutation p.Q567* 0.16 TCGA-SY-A9G5-01 4 126239633 126239633 C T FAT4 Silent p.F689F 0.13 TCGA-SY-A9G5-01 4 129864228 129864228 C G SCLT1 Missense_Mutation p.E519Q 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-SY-A9G5-01 4 129867197 129867197 C T SCLT1 Silent p.T468T 0.09 TCGA-SY-A9G5-01 4 129867281 129867281 C T SCLT1 Silent p.E440E 0.09 TCGA-SY-A9G5-01 4 13600726 13600726 C T BOD1L1 Missense_Mutation p.E2600K 0.14 benign(0.055) TCGA-SY-A9G5-01 4 142053860 142053860 C T RNF150 Missense_Mutation p.E35K 0.25 tolerated(0.12) benign(0.166) TCGA-SY-A9G5-01 4 151837852 151837852 C G LRBA Missense_Mutation p.Q228H 0.20 deleterious(0) probably_damaging(0.998) TCGA-SY-A9G5-01 4 152069283 152069283 C T SH3D19 Missense_Mutation p.E345K 0.34 tolerated(0.09) benign(0.354) TCGA-SY-A9G5-01 4 15443798 15443798 G C C1QTNF7 Missense_Mutation p.R89T 0.16 tolerated(0.36) possibly_damaging(0.604) TCGA-SY-A9G5-01 4 155219363 155219363 C T DCHS2 Missense_Mutation p.D1580N 0.12 tolerated(0.22) benign(0.009) TCGA-SY-A9G5-01 4 155241780 155241780 C A DCHS2 Missense_Mutation p.D1136Y 0.14 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 4 155242338 155242338 G C DCHS2 Missense_Mutation p.Q950E 0.16 deleterious(0.01) benign(0.298) TCGA-SY-A9G5-01 4 155249332 155249332 G A DCHS2 Nonsense_Mutation p.Q856* 0.30 TCGA-SY-A9G5-01 4 156698735 156698735 G A GUCY1B3 Missense_Mutation p.E80K 0.16 tolerated(0.11) possibly_damaging(0.457) TCGA-SY-A9G5-01 4 166243198 166243198 G C KLHL2 Missense_Mutation p.D594H 0.15 tolerated(0.11) benign(0.007) TCGA-SY-A9G5-01 4 166913997 166913997 C G TLL1 Missense_Mutation p.L108V 0.08 tolerated(0.21) benign(0.009) TCGA-SY-A9G5-01 4 174242741 174242741 G A GALNT7 Missense_Mutation p.R616K 0.34 tolerated(0.39) benign(0.026) TCGA-SY-A9G5-01 4 17608493 17608493 C G LAP3 Silent p.L434L 0.14 TCGA-SY-A9G5-01 4 185012519 185012519 G A ENPP6 Silent p.F378F 0.13 TCGA-SY-A9G5-01 4 186085307 186085307 C T KIAA1430 Silent p.V449V 0.28 TCGA-SY-A9G5-01 4 186231881 186231881 G A SNX25 Missense_Mutation p.E255K 0.14 deleterious(0) possibly_damaging(0.896) TCGA-SY-A9G5-01 4 189012595 189012595 C T TRIML2 Missense_Mutation p.D366N 0.34 tolerated(0.08) benign(0.063) TCGA-SY-A9G5-01 4 1932464 1932464 C G WHSC1 Missense_Mutation p.L508V 0.22 tolerated(0.34) benign(0.091) TCGA-SY-A9G5-01 4 2932713 2932713 G A MFSD10 Intron 0.21 TCGA-SY-A9G5-01 4 39436315 39436315 G A KLB Silent p.K437K 0.40 TCGA-SY-A9G5-01 4 40351175 40351175 G C CHRNA9 Silent p.V214V 0.31 TCGA-SY-A9G5-01 4 435838 435838 C G ZNF721 Missense_Mutation p.E806D 0.14 deleterious(0.02) possibly_damaging(0.538) TCGA-SY-A9G5-01 4 48592784 48592784 C T FRYL Missense_Mutation p.E467K 0.15 deleterious(0) benign(0.099) TCGA-SY-A9G5-01 4 49019290 49019290 G A CWH43 Missense_Mutation p.G404E 0.23 deleterious(0.02) possibly_damaging(0.899) TCGA-SY-A9G5-01 4 56724501 56724501 C G EXOC1 Missense_Mutation p.I4M 0.24 deleterious(0) possibly_damaging(0.901) TCGA-SY-A9G5-01 4 57367921 57367921 C T SRP72 Missense_Mutation p.S637F 0.29 deleterious(0.01) benign(0.396) TCGA-SY-A9G5-01 4 629722 629722 G C PDE6B Silent p.L225L 0.18 TCGA-SY-A9G5-01 4 6598886 6598886 G A MAN2B2 Silent p.L368L 0.21 TCGA-SY-A9G5-01 4 673707 673707 G C MYL5 Missense_Mutation p.K64N 0.27 deleterious(0) possibly_damaging(0.69) TCGA-SY-A9G5-01 4 69179775 69179775 G C YTHDC1 3'UTR 0.12 TCGA-SY-A9G5-01 4 70355279 70355279 C G UGT2B4 Missense_Mutation p.E294Q 0.18 deleterious(0.01) possibly_damaging(0.853) TCGA-SY-A9G5-01 4 77324385 77324385 G C CCDC158 5'UTR 0.31 TCGA-SY-A9G5-01 4 7774715 7774715 C A AFAP1 Silent p.L695L 0.18 TCGA-SY-A9G5-01 4 79747198 79747198 C T BMP2K Silent p.F62F 0.31 TCGA-SY-A9G5-01 4 82065435 82065435 C T PRKG2 Missense_Mutation p.E402K 0.10 tolerated(0.42) benign(0.01) TCGA-SY-A9G5-01 4 85598427 85598427 G A WDFY3 Missense_Mutation p.S3461L 0.23 tolerated(0.21) possibly_damaging(0.78) TCGA-SY-A9G5-01 4 85612913 85612913 G C WDFY3 Missense_Mutation p.I3025M 0.12 deleterious(0) probably_damaging(0.932) TCGA-SY-A9G5-01 4 89599257 89599257 C T HERC3 Missense_Mutation p.S723F 0.16 deleterious(0.02) probably_damaging(0.91) TCGA-SY-A9G5-01 4 96761509 96761509 C A PDHA2 Missense_Mutation p.R70S 0.17 deleterious(0) probably_damaging(0.992) TCGA-SY-A9G5-01 5 114952054 114952054 C T TMED7-TICAM2 Missense_Mutation p.R176Q 0.27 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-SY-A9G5-01 5 127782207 127782207 G C FBN2 Missense_Mutation p.H307D 0.19 deleterious(0) benign(0.152) TCGA-SY-A9G5-01 5 131713882 131713882 G A SLC22A5 Intron 0.32 TCGA-SY-A9G5-01 5 132362197 132362197 C G ZCCHC10 Silent p.R11R 0.14 TCGA-SY-A9G5-01 5 133295424 133295424 G C C5orf15 Missense_Mutation p.L143V 0.28 tolerated(0.09) benign(0.031) TCGA-SY-A9G5-01 5 135583159 135583159 G A TRPC7 Missense_Mutation p.T615M 0.30 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G5-01 5 137089327 137089327 G A HNRNPA0 Silent p.F143F 0.15 TCGA-SY-A9G5-01 5 137753271 137753271 G A KDM3B Missense_Mutation p.R1136K 0.10 tolerated(0.7) benign(0.082) TCGA-SY-A9G5-01 5 139741401 139741401 C T SLC4A9 Missense_Mutation p.H196Y 0.26 tolerated(0.28) benign(0.317) TCGA-SY-A9G5-01 5 139928652 139928652 G C EIF4EBP3 Missense_Mutation p.E89Q 0.27 tolerated(0.53) probably_damaging(0.946) TCGA-SY-A9G5-01 5 140021488 140021488 C G TMCO6 Silent p.L116L 0.11 TCGA-SY-A9G5-01 5 140176661 140176661 C T PCDHA2 Silent p.I704I 0.15 TCGA-SY-A9G5-01 5 140308740 140308740 C G PCDHAC1 Missense_Mutation p.L755V 0.12 tolerated(0.14) benign(0.006) TCGA-SY-A9G5-01 5 140515518 140515518 C T PCDHB5 Nonsense_Mutation p.Q168* 0.17 TCGA-SY-A9G5-01 5 140537631 140537631 G A PCDHB17 3'UTR 0.32 TCGA-SY-A9G5-01 5 140573007 140573007 C G PCDHB10 Missense_Mutation p.I294M 0.14 deleterious_low_confidence(0.02) benign(0.333) TCGA-SY-A9G5-01 5 140580342 140580342 C A PCDHB11 Missense_Mutation p.T332K 0.29 deleterious_low_confidence(0.02) benign(0.183) TCGA-SY-A9G5-01 5 142780229 142780229 C T NR3C1 Missense_Mutation p.R59Q 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-SY-A9G5-01 5 145634629 145634629 C T RBM27 Missense_Mutation p.S523F 0.29 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 5 148407942 148407942 T C SH3TC2 Silent p.E451E 0.10 TCGA-SY-A9G5-01 5 150028077 150028077 C T SYNPO Silent p.L324L 0.11 TCGA-SY-A9G5-01 5 167945051 167945051 G C RARS Missense_Mutation p.E619D 0.19 tolerated(0.12) probably_damaging(0.993) TCGA-SY-A9G5-01 5 169464 169464 G A PLEKHG4B Silent p.L806L 0.26 TCGA-SY-A9G5-01 5 176733484 176733484 G A PRELID1 Silent p.E191E 0.14 TCGA-SY-A9G5-01 5 178152447 178152447 C T ZNF354A Silent p.V62V 0.11 TCGA-SY-A9G5-01 5 179147464 179147464 C T CANX Missense_Mutation p.S362L 0.30 tolerated(0.15) benign(0.255) TCGA-SY-A9G5-01 5 180048704 180048704 G C FLT4 Missense_Mutation p.L620V 0.33 tolerated(0.06) possibly_damaging(0.9) TCGA-SY-A9G5-01 5 180377133 180377133 G C BTNL8 Missense_Mutation p.R364S 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-SY-A9G5-01 5 32088472 32088472 G C PDZD2 Missense_Mutation p.E1640Q 0.22 tolerated(0.31) benign(0.011) TCGA-SY-A9G5-01 5 34020707 34020708 - G C1QTNF3 Frame_Shift_Ins p.L314Pfs*4 0.11 TCGA-SY-A9G5-01 5 38407204 38407204 G A EGFLAM Missense_Mutation p.R368Q 0.11 tolerated(0.06) benign(0.426) TCGA-SY-A9G5-01 5 41176619 41176619 C T C6 Missense_Mutation p.D376N 0.10 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 5 42718993 42718993 G A GHR Missense_Mutation p.E462K 0.29 tolerated(0.61) benign(0.04) TCGA-SY-A9G5-01 5 44310556 44310556 C T FGF10 Missense_Mutation p.M134I 0.27 tolerated(0.37) benign(0.133) TCGA-SY-A9G5-01 5 45262214 45262214 G C HCN1 Missense_Mutation p.Q828E 0.20 tolerated_low_confidence(0.19) benign(0.074) TCGA-SY-A9G5-01 5 50123805 50123805 C G PARP8 Missense_Mutation p.Q669E 0.16 deleterious(0) possibly_damaging(0.9) TCGA-SY-A9G5-01 5 5232615 5232615 C G ADAMTS16 Silent p.L612L 0.06 TCGA-SY-A9G5-01 5 68669672 68669672 G A RAD17 Missense_Mutation p.D20N 0.30 tolerated(0.1) benign(0.185) TCGA-SY-A9G5-01 5 70813176 70813176 G A BDP1 Missense_Mutation p.E1630K 0.23 tolerated(0.05) probably_damaging(0.994) TCGA-SY-A9G5-01 5 74021829 74021829 C G GFM2 Missense_Mutation p.E617Q 0.34 tolerated(0.37) benign(0.024) TCGA-SY-A9G5-01 5 78260370 78260370 G C ARSB Missense_Mutation p.L187V 0.24 tolerated(0.58) benign(0.108) TCGA-SY-A9G5-01 5 79028864 79028864 C G CMYA5 Missense_Mutation p.P1426A 0.32 benign(0.039) TCGA-SY-A9G5-01 5 89705506 89705506 C A CETN3 5'UTR 0.39 TCGA-SY-A9G5-01 5 96364213 96364213 C T LNPEP Silent p.L1018L 0.08 TCGA-SY-A9G5-01 6 101163219 101163219 C T ASCC3 Intron 0.38 TCGA-SY-A9G5-01 6 105298851 105298851 G C HACE1 Nonsense_Mutation p.S51* 0.33 TCGA-SY-A9G5-01 6 10730884 10730884 C T TMEM14C Silent p.F108F 0.09 TCGA-SY-A9G5-01 6 110777945 110777945 G C SLC22A16 Missense_Mutation p.S110W 0.27 deleterious(0.01) probably_damaging(0.964) TCGA-SY-A9G5-01 6 111588177 111588177 C T KIAA1919 Missense_Mutation p.S471F 0.36 deleterious(0.02) possibly_damaging(0.861) TCGA-SY-A9G5-01 6 111912853 111912853 G A TRAF3IP2 Missense_Mutation p.S146L 0.10 deleterious(0) possibly_damaging(0.873) TCGA-SY-A9G5-01 6 111913005 111913005 G C TRAF3IP2 Missense_Mutation p.F95L 0.10 tolerated(0.27) benign(0.049) TCGA-SY-A9G5-01 6 111913238 111913238 G A TRAF3IP2 Nonsense_Mutation p.Q18* 0.07 TCGA-SY-A9G5-01 6 119232887 119232887 G C MCM9 Missense_Mutation p.Q360E 0.17 deleterious(0) probably_damaging(0.98) TCGA-SY-A9G5-01 6 132824616 132824616 G A STX7 Silent p.I18I 0.32 TCGA-SY-A9G5-01 6 133055849 133055849 C G VNN3 5'Flank 0.50 TCGA-SY-A9G5-01 6 135286411 135286411 G A HBS1L 3'UTR 0.24 TCGA-SY-A9G5-01 6 138417522 138417522 C G PERP Silent p.L108L 0.68 TCGA-SY-A9G5-01 6 151669881 151669881 G C AKAP12 Missense_Mutation p.D119H 0.26 deleterious(0) possibly_damaging(0.861) TCGA-SY-A9G5-01 6 152456337 152456337 G T SYNE1 Missense_Mutation p.L8564I 0.34 possibly_damaging(0.557) TCGA-SY-A9G5-01 6 153043227 153043227 C A MYCT1 Missense_Mutation p.Q183K 0.33 deleterious(0.03) benign(0.392) TCGA-SY-A9G5-01 6 155569224 155569224 C A TIAM2 Missense_Mutation p.P1248Q 0.34 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 6 16145428 16145428 G A MYLIP Silent p.E376E 0.25 TCGA-SY-A9G5-01 6 161537906 161537906 C T MAP3K4 3'UTR 0.12 TCGA-SY-A9G5-01 6 167436056 167436056 G A FGFR1OP Missense_Mutation p.E247K 0.31 deleterious(0.02) benign(0.283) TCGA-SY-A9G5-01 6 25581503 25581503 G A LRRC16A Missense_Mutation p.E948K 0.09 tolerated(0.05) possibly_damaging(0.766) TCGA-SY-A9G5-01 6 26156599 26156599 C T HIST1H1E 5'UTR 0.45 TCGA-SY-A9G5-01 6 26216841 26216841 G C HIST1H2BG Missense_Mutation p.P11A 0.40 tolerated_low_confidence(0.11) unknown(0) TCGA-SY-A9G5-01 6 26273239 26273239 G C HIST1H2BI Missense_Mutation p.K12N 0.13 deleterious_low_confidence(0) benign(0.067) TCGA-SY-A9G5-01 6 27216692 27216692 G A PRSS16 Missense_Mutation p.E102K 0.36 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 6 27782869 27782869 G A HIST1H2BM Silent p.K16K 0.33 TCGA-SY-A9G5-01 6 29429621 29429621 C T OR2H1 Silent p.L25L 0.16 TCGA-SY-A9G5-01 6 29912276 29912276 G C HLA-A Splice_Site p.X299_splice 0.34 TCGA-SY-A9G5-01 6 30652783 30652783 G C PPP1R18 Missense_Mutation p.S338C 0.47 deleterious_low_confidence(0.04) benign(0.147) TCGA-SY-A9G5-01 6 30697837 30697837 C G FLOT1 Missense_Mutation p.E406Q 0.12 tolerated(0.46) benign(0.007) TCGA-SY-A9G5-01 6 31324875 31324875 C A HLA-B Nonsense_Mutation p.E21* 0.71 TCGA-SY-A9G5-01 6 32948366 32948366 G C BRD2 Missense_Mutation p.E794D 0.30 tolerated(0.14) benign(0.217) TCGA-SY-A9G5-01 6 35443741 35443741 G T TEAD3 Silent p.L285L 0.30 TCGA-SY-A9G5-01 6 4069418 4069418 C T FAM217A Missense_Mutation p.D347N 0.47 tolerated(0.08) benign(0.323) TCGA-SY-A9G5-01 6 4135771 4135771 C G ECI2 Missense_Mutation p.W8C 0.45 deleterious_low_confidence(0.05) benign(0.19) TCGA-SY-A9G5-01 6 41767593 41767593 G C USP49 Missense_Mutation p.L549V 0.17 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 6 41767607 41767607 C T USP49 Missense_Mutation p.R544K 0.18 tolerated(0.83) possibly_damaging(0.511) TCGA-SY-A9G5-01 6 42996986 42996986 C G RRP36 3'UTR 0.37 TCGA-SY-A9G5-01 6 43474971 43474971 G A LRRC73 3'UTR 0.35 TCGA-SY-A9G5-01 6 44279155 44279155 C T AARS2 Missense_Mutation p.E185K 0.27 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 6 45882154 45882154 G A CLIC5 Intron 0.19 TCGA-SY-A9G5-01 6 46658476 46658476 G A TDRD6 Missense_Mutation p.E871K 0.16 tolerated(0.13) possibly_damaging(0.685) TCGA-SY-A9G5-01 6 46979843 46979843 G T GPR110 Nonsense_Mutation p.S339* 0.20 TCGA-SY-A9G5-01 6 4996470 4996470 G T RPP40 Missense_Mutation p.F248L 0.75 tolerated(0.66) benign(0.02) TCGA-SY-A9G5-01 6 51934257 51934257 G C PKHD1 Nonsense_Mutation p.S259* 0.14 TCGA-SY-A9G5-01 6 53378911 53378911 G C GCLC Intron 0.24 TCGA-SY-A9G5-01 6 56473753 56473753 C T DST Intron 0.30 TCGA-SY-A9G5-01 6 6002725 6002725 G C NRN1 Missense_Mutation p.L21V 0.31 tolerated(0.15) benign(0.015) TCGA-SY-A9G5-01 6 70639380 70639380 G C COL19A1 Missense_Mutation p.D152H 0.63 tolerated(0.06) unknown(0) TCGA-SY-A9G5-01 6 70639518 70639518 G A COL19A1 Missense_Mutation p.D198N 0.67 deleterious(0.01) unknown(0) TCGA-SY-A9G5-01 6 73935024 73935024 G C KHDC1L Missense_Mutation p.I36M 0.08 deleterious(0) possibly_damaging(0.868) TCGA-SY-A9G5-01 6 75847185 75847185 G A COL12A1 Nonsense_Mutation p.Q1788* 0.36 TCGA-SY-A9G5-01 6 76018490 76018490 G C FILIP1 Missense_Mutation p.R1187G 0.38 deleterious(0.02) probably_damaging(0.91) TCGA-SY-A9G5-01 6 88128027 88128027 G A C6ORF165 Missense_Mutation p.E245K 0.33 deleterious(0) possibly_damaging(0.574) TCGA-SY-A9G5-01 6 97053869 97053869 G C FHL5 Missense_Mutation p.L142F 0.31 tolerated(1) benign(0.309) TCGA-SY-A9G5-01 7 100252740 100252740 C G ACTL6B Missense_Mutation p.E91Q 0.12 deleterious(0.05) possibly_damaging(0.832) TCGA-SY-A9G5-01 7 100484518 100484518 C A SRRT Missense_Mutation p.P584T 0.22 tolerated(0.56) benign(0.007) TCGA-SY-A9G5-01 7 100841624 100841624 C G MOGAT3 Missense_Mutation p.Q172H 0.24 tolerated(0.31) benign(0.012) TCGA-SY-A9G5-01 7 101844978 101844978 G A CUX1 Missense_Mutation p.D812N 0.18 tolerated(0.16) unknown(0) TCGA-SY-A9G5-01 7 101916697 101916697 G A CUX1 Missense_Mutation p.R437K 0.19 tolerated(1) benign(0.001) TCGA-SY-A9G5-01 7 106545867 106545867 C G PIK3CG 3'UTR 0.16 TCGA-SY-A9G5-01 7 107555978 107555978 G C DLD Missense_Mutation p.D238H 0.24 deleterious(0.02) benign(0.064) TCGA-SY-A9G5-01 7 107626657 107626657 G C LAMB1 Missense_Mutation p.S192C 0.23 deleterious(0) probably_damaging(0.987) TCGA-SY-A9G5-01 7 107790427 107790427 C G NRCAM Missense_Mutation p.E1281D 0.23 tolerated(1) possibly_damaging(0.836) TCGA-SY-A9G5-01 7 108204815 108204815 C T THAP5 Silent p.Q336Q 0.25 TCGA-SY-A9G5-01 7 115890401 115890401 G A TES Missense_Mutation p.E185K 0.31 tolerated(0.18) probably_damaging(1) TCGA-SY-A9G5-01 7 122091442 122091442 C A CADPS2 Missense_Mutation p.Q758H 0.24 deleterious(0.03) benign(0.039) TCGA-SY-A9G5-01 7 126883230 126883230 G A GRM8 Missense_Mutation p.S10F 0.33 tolerated_low_confidence(0.08) benign(0.007) TCGA-SY-A9G5-01 7 127961316 127961316 C T RBM28 Intron 0.19 TCGA-SY-A9G5-01 7 128097553 128097553 G A HILPDA 3'UTR 0.35 TCGA-SY-A9G5-01 7 128498515 128498515 C G FLNC Missense_Mutation p.L2706V 0.27 tolerated(0.32) benign(0.029) TCGA-SY-A9G5-01 7 128610360 128610360 C G TNPO3 Missense_Mutation p.D814H 0.15 tolerated(0.09) benign(0.022) TCGA-SY-A9G5-01 7 128612603 128612603 C G TNPO3 Silent p.R769R 0.22 TCGA-SY-A9G5-01 7 129098131 129098131 G A STRIP2 Missense_Mutation p.E372K 0.19 tolerated(0.23) benign(0.423) TCGA-SY-A9G5-01 7 134212542 134212542 G C AKR1B10 5'UTR 0.42 TCGA-SY-A9G5-01 7 134212587 134212587 G C AKR1B10 5'UTR 0.26 TCGA-SY-A9G5-01 7 135269687 135269687 C G NUP205 Missense_Mutation p.Q384E 0.21 tolerated(0.1) benign(0.3) TCGA-SY-A9G5-01 7 142231585 142231585 G A TRBV10-1 Missense_Mutation p.A111V 0.25 deleterious(0) probably_damaging(0.979) TCGA-SY-A9G5-01 7 143042826 143042826 G A CLCN1 Missense_Mutation p.E715K 0.23 tolerated(0.17) benign(0.24) TCGA-SY-A9G5-01 7 148703136 148703136 G A PDIA4 Nonsense_Mutation p.Q381* 0.40 TCGA-SY-A9G5-01 7 1516274 1516274 G C INTS1 Missense_Mutation p.L1695V 0.09 deleterious(0) possibly_damaging(0.646) TCGA-SY-A9G5-01 7 156549156 156549156 G C LMBR1 Missense_Mutation p.L230V 0.19 deleterious(0) possibly_damaging(0.721) TCGA-SY-A9G5-01 7 157361643 157361643 C G PTPRN2 Silent p.R951R 0.24 TCGA-SY-A9G5-01 7 23221622 23221622 G C NUPL2 5'UTR 0.37 TCGA-SY-A9G5-01 7 2473142 2473142 G A CHST12 Missense_Mutation p.E290K 0.11 tolerated(0.2) possibly_damaging(0.871) TCGA-SY-A9G5-01 7 28725799 28725799 C A CREB5 Intron 0.29 TCGA-SY-A9G5-01 7 30668173 30668173 C T GARS Intron 0.28 TCGA-SY-A9G5-01 7 39125538 39125539 - AGA POU6F2 In_Frame_Ins p.D33delinsEN 0.24 TCGA-SY-A9G5-01 7 42004491 42004491 G A GLI3 Missense_Mutation p.R1394C 0.18 deleterious_low_confidence(0) benign(0.006) TCGA-SY-A9G5-01 7 42262804 42262804 C A GLI3 Nonsense_Mutation p.E17* 0.25 TCGA-SY-A9G5-01 7 43547649 43547649 G C HECW1 Missense_Mutation p.G1262A 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-SY-A9G5-01 7 44104801 44104801 C G PGAM2 Missense_Mutation p.E110Q 0.30 deleterious(0.04) possibly_damaging(0.461) TCGA-SY-A9G5-01 7 44266212 44266212 C T CAMK2B Silent p.V500V 0.19 TCGA-SY-A9G5-01 7 44804952 44804952 C T ZMIZ2 Silent p.I672I 0.15 TCGA-SY-A9G5-01 7 45139879 45139879 T A TBRG4 3'UTR 0.29 TCGA-SY-A9G5-01 7 5430161 5430161 G C TNRC18 Missense_Mutation p.Q148E 0.29 benign(0.437) TCGA-SY-A9G5-01 7 5633141 5633141 G A FSCN1 Missense_Mutation p.D192N 0.15 tolerated(0.22) benign(0.05) TCGA-SY-A9G5-01 7 64275397 64275397 G C ZNF138 Missense_Mutation p.E35D 0.11 deleterious(0.02) possibly_damaging(0.533) TCGA-SY-A9G5-01 7 66463094 66463094 C T TYW1 Missense_Mutation p.S16L 0.15 tolerated_low_confidence(0.25) benign(0.002) TCGA-SY-A9G5-01 7 72419827 72419827 C T POM121 3'UTR 0.42 TCGA-SY-A9G5-01 7 75028277 75028277 G A TRIM73 Silent p.L20L 0.08 TCGA-SY-A9G5-01 7 75959024 75959024 A G YWHAG Missense_Mutation p.I205T 0.21 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-SY-A9G5-01 7 81346574 81346574 G A HGF Missense_Mutation p.P460L 0.12 deleterious(0.03) probably_damaging(1) TCGA-SY-A9G5-01 7 82474693 82474693 C T PCLO Missense_Mutation p.G4647E 0.28 unknown(0) TCGA-SY-A9G5-01 7 82544514 82544514 C T PCLO Missense_Mutation p.G4263E 0.29 unknown(0) TCGA-SY-A9G5-01 7 82544587 82544587 C T PCLO Missense_Mutation p.D4239N 0.13 unknown(0) TCGA-SY-A9G5-01 7 83277885 83277885 C G SEMA3E 5'UTR 0.31 TCGA-SY-A9G5-01 7 89856593 89856593 C G STEAP2 Silent p.L267L 0.22 TCGA-SY-A9G5-01 7 91708503 91708503 C G AKAP9 Silent p.L2352L 0.16 TCGA-SY-A9G5-01 7 91709463 91709463 C G AKAP9 Silent p.L2672L 0.18 TCGA-SY-A9G5-01 7 92763630 92763630 G T SAMD9L Nonsense_Mutation p.S552* 0.29 TCGA-SY-A9G5-01 7 93108669 93108669 C T CALCR Missense_Mutation p.E86K 0.23 tolerated(0.27) benign(0.031) TCGA-SY-A9G5-01 7 96339024 96339024 C T SHFM1 Missense_Mutation p.E18K 0.22 deleterious(0.01) probably_damaging(0.974) TCGA-SY-A9G5-01 7 99002502 99002502 C T PDAP1 Missense_Mutation p.E30K 0.26 tolerated(0.06) possibly_damaging(0.636) TCGA-SY-A9G5-01 7 99002573 99002573 C T PDAP1 Missense_Mutation p.R6K 0.24 tolerated(1) benign(0.067) TCGA-SY-A9G5-01 7 99021556 99021556 G A ATP5J2-PTCD1 Missense_Mutation p.H637Y 0.29 tolerated(0.3) benign(0.026) TCGA-SY-A9G5-01 7 99669212 99669212 G C ZNF3 Missense_Mutation p.L299V 0.17 deleterious(0) possibly_damaging(0.8) TCGA-SY-A9G5-01 7 99669290 99669290 G C ZNF3 Missense_Mutation p.L273V 0.21 tolerated(0.09) possibly_damaging(0.779) TCGA-SY-A9G5-01 8 100568829 100568829 G C VPS13B Missense_Mutation p.E1658Q 0.47 tolerated(0.13) probably_damaging(0.932) TCGA-SY-A9G5-01 8 101252695 101252695 C T SPAG1 Missense_Mutation p.S782F 0.25 deleterious(0.01) benign(0.114) TCGA-SY-A9G5-01 8 101252722 101252722 C A SPAG1 Nonsense_Mutation p.S791* 0.29 TCGA-SY-A9G5-01 8 105368445 105368445 C G DCSTAMP 3'UTR 0.22 TCGA-SY-A9G5-01 8 105503688 105503688 C T LRP12 Missense_Mutation p.R598K 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-SY-A9G5-01 8 109797143 109797143 G C TMEM74 Missense_Mutation p.S62C 0.07 deleterious(0.02) benign(0.213) TCGA-SY-A9G5-01 8 110445442 110445442 G A PKHD1L1 Missense_Mutation p.D1113N 0.13 tolerated(0.56) benign(0.009) TCGA-SY-A9G5-01 8 110504178 110504178 G A PKHD1L1 Silent p.Q3397Q 0.20 TCGA-SY-A9G5-01 8 113276011 113276011 G C CSMD3 Missense_Mutation p.S3240C 0.12 tolerated(0.13) probably_damaging(0.981) TCGA-SY-A9G5-01 8 117878845 117878845 C G RAD21 Missense_Mutation p.E42Q 0.31 deleterious(0.01) possibly_damaging(0.867) TCGA-SY-A9G5-01 8 122641304 122641304 G C HAS2 Missense_Mutation p.Q93E 0.21 deleterious(0) probably_damaging(0.995) TCGA-SY-A9G5-01 8 124710770 124710770 C T ANXA13 Silent p.L113L 0.24 TCGA-SY-A9G5-01 8 124710775 124710775 C T ANXA13 Missense_Mutation p.E112K 0.24 deleterious(0) probably_damaging(0.927) TCGA-SY-A9G5-01 8 125989773 125989773 C T ZNF572 Silent p.F421F 0.41 TCGA-SY-A9G5-01 8 133740079 133740079 G A TMEM71 Missense_Mutation p.S195F 0.30 tolerated(0.08) probably_damaging(0.975) TCGA-SY-A9G5-01 8 139163462 139163462 C T FAM135B Missense_Mutation p.E1086K 0.34 tolerated(0.09) benign(0.066) TCGA-SY-A9G5-01 8 141572601 141572601 C T AGO2 Missense_Mutation p.E157K 0.22 deleterious(0) benign(0.022) TCGA-SY-A9G5-01 8 144332560 144332560 A G ZFP41 Missense_Mutation p.S183G 0.09 deleterious(0.02) possibly_damaging(0.696) TCGA-SY-A9G5-01 8 145542410 145542410 G C DGAT1 Silent p.A140A 0.45 TCGA-SY-A9G5-01 8 145692627 145692627 C T KIFC2 Silent p.L124L 0.20 TCGA-SY-A9G5-01 8 146033168 146033168 C T ZNF517 Silent p.F289F 0.24 TCGA-SY-A9G5-01 8 22423978 22423978 C G SORBS3 Silent p.V357V 0.13 TCGA-SY-A9G5-01 8 22865498 22865498 C G RHOBTB2 Intron 0.14 TCGA-SY-A9G5-01 8 30536990 30536990 C T GSR 3'UTR 0.16 TCGA-SY-A9G5-01 8 30704505 30704505 C T TEX15 Missense_Mutation p.E677K 0.14 deleterious(0.04) benign(0.067) TCGA-SY-A9G5-01 8 38184304 38184304 C G WHSC1L1 Missense_Mutation p.R551T 0.13 tolerated(0.3) benign(0.027) TCGA-SY-A9G5-01 8 48647883 48647883 G A SPIDR Silent p.K873K 0.11 TCGA-SY-A9G5-01 8 48647990 48647990 G A SPIDR Missense_Mutation p.G909E 0.09 tolerated(0.11) benign(0.04) TCGA-SY-A9G5-01 8 48777246 48777246 G A PRKDC Silent p.F1813F 0.17 TCGA-SY-A9G5-01 8 48802890 48802890 G T PRKDC Missense_Mutation p.S1332R 0.18 benign(0.16) TCGA-SY-A9G5-01 8 48826512 48826512 G A PRKDC Silent p.F910F 0.23 TCGA-SY-A9G5-01 8 56686115 56686115 G A TGS1 5'UTR 0.29 TCGA-SY-A9G5-01 8 59059544 59059544 G A FAM110B Missense_Mutation p.R252Q 0.13 deleterious(0.01) possibly_damaging(0.871) TCGA-SY-A9G5-01 8 61765938 61765938 G A CHD7 Silent p.L2218L 0.28 TCGA-SY-A9G5-01 8 68071226 68071226 C G CSPP1 Missense_Mutation p.Q793E 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-SY-A9G5-01 8 68139687 68139687 C T ARFGEF1 Silent p.R1246R 0.22 TCGA-SY-A9G5-01 8 68139733 68139733 C G ARFGEF1 Missense_Mutation p.R1231T 0.17 deleterious(0) possibly_damaging(0.833) TCGA-SY-A9G5-01 8 68139758 68139758 C G ARFGEF1 Missense_Mutation p.E1223Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-SY-A9G5-01 8 70591784 70591784 C T SLCO5A1 Missense_Mutation p.R618Q 0.29 tolerated(0.29) probably_damaging(0.909) TCGA-SY-A9G5-01 8 72127944 72127944 C T EYA1 Silent p.K460K 0.20 TCGA-SY-A9G5-01 8 72964943 72964943 G A TRPA1 Silent p.L568L 0.23 TCGA-SY-A9G5-01 8 80942405 80942405 G A MRPS28 Missense_Mutation p.R27W 0.24 deleterious(0) probably_damaging(0.971) TCGA-SY-A9G5-01 8 80942415 80942415 G A MRPS28 Silent p.F23F 0.29 TCGA-SY-A9G5-01 8 86158014 86158014 C T CA13 5'UTR 0.26 TCGA-SY-A9G5-01 8 87560571 87560571 C G CPNE3 Missense_Mutation p.P308A 0.23 deleterious(0.02) benign(0.13) TCGA-SY-A9G5-01 8 87570750 87570750 C G CPNE3 3'UTR 0.22 TCGA-SY-A9G5-01 8 99028777 99028777 C G MATN2 Missense_Mutation p.S528C 0.40 tolerated(0.17) benign(0.289) TCGA-SY-A9G5-01 9 100092735 100092735 G A CCDC180 Missense_Mutation p.E698K 0.27 tolerated(0.11) benign(0.188) TCGA-SY-A9G5-01 9 100245153 100245153 G C TDRD7 Missense_Mutation p.R812T 0.44 tolerated(0.07) benign(0.005) TCGA-SY-A9G5-01 9 101900210 101900210 G C TGFBR1 Missense_Mutation p.R215P 0.11 deleterious(0) probably_damaging(0.996) TCGA-SY-A9G5-01 9 104187842 104187842 G C ALDOB Missense_Mutation p.P231R 0.39 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 9 104449060 104449060 G A GRIN3A Silent p.L374L 0.37 TCGA-SY-A9G5-01 9 107548652 107548652 G C ABCA1 Missense_Mutation p.L2110V 0.08 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 9 111651662 111651662 C G IKBKAP Missense_Mutation p.E1058Q 0.39 tolerated(0.07) possibly_damaging(0.808) TCGA-SY-A9G5-01 9 113637885 113637885 G C LPAR1 Missense_Mutation p.S304C 0.46 deleterious(0) probably_damaging(0.997) TCGA-SY-A9G5-01 9 114305279 114305279 G C ZNF483 Missense_Mutation p.E688D 0.43 deleterious(0) benign(0.093) TCGA-SY-A9G5-01 9 116151371 116151371 G C ALAD Missense_Mutation p.L273V 0.46 tolerated(0.48) possibly_damaging(0.71) TCGA-SY-A9G5-01 9 127911865 127911865 C T PPP6C 3'UTR 0.42 TCGA-SY-A9G5-01 9 131051150 131051150 G A SWI5 3'UTR 0.43 TCGA-SY-A9G5-01 9 131755967 131755967 G A NUP188 Missense_Mutation p.R1004Q 0.50 deleterious(0.02) probably_damaging(0.996) TCGA-SY-A9G5-01 9 132593265 132593265 C G C9orf78 Missense_Mutation p.E143Q 0.50 deleterious(0.02) probably_damaging(0.986) TCGA-SY-A9G5-01 9 132687432 132687432 G A FNBP1 Missense_Mutation p.S265L 0.47 deleterious(0) probably_damaging(0.965) TCGA-SY-A9G5-01 9 132890928 132890928 G A GPR107 Missense_Mutation p.E532K 0.44 deleterious(0.03) possibly_damaging(0.896) TCGA-SY-A9G5-01 9 132890960 132890960 G A GPR107 Silent p.T542T 0.44 TCGA-SY-A9G5-01 9 134151352 134151352 G C FAM78A Missense_Mutation p.S72W 0.44 deleterious(0) probably_damaging(0.914) TCGA-SY-A9G5-01 9 134351465 134351465 C T PRRC2B Missense_Mutation p.R1317W 0.09 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 9 135865175 135865175 C T GFI1B Missense_Mutation p.S232L 0.12 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 9 138377481 138377481 C T PPP1R26 Silent p.Y375Y 0.47 TCGA-SY-A9G5-01 9 138847184 138847184 C T UBAC1 Silent p.L72L 0.46 TCGA-SY-A9G5-01 9 139620595 139620595 C T FAM69B 3'Flank 0.50 TCGA-SY-A9G5-01 9 139741076 139741076 C T C9orf172 Missense_Mutation p.S737L 0.53 deleterious(0) probably_damaging(0.949) TCGA-SY-A9G5-01 9 139871959 139871959 C G PTGDS 5'UTR 0.89 TCGA-SY-A9G5-01 9 14784511 14784511 G A FREM1 Silent p.I1433I 0.38 TCGA-SY-A9G5-01 9 14863874 14863874 C A FREM1 Nonsense_Mutation p.E88* 0.46 TCGA-SY-A9G5-01 9 32408531 32408531 G C ACO1 Missense_Mutation p.D96H 0.46 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 9 32448891 32448891 C T ACO1 Intron 0.40 TCGA-SY-A9G5-01 9 33912012 33912012 C G UBE2R2 Missense_Mutation p.S138C 0.43 deleterious(0.02) possibly_damaging(0.795) TCGA-SY-A9G5-01 9 33917273 33917273 C A UBE2R2 3'UTR 0.39 TCGA-SY-A9G5-01 9 33917318 33917318 C A UBE2R2 3'UTR 0.29 TCGA-SY-A9G5-01 9 34250747 34250747 C T UBAP1 Missense_Mutation p.S517L 0.38 deleterious(0) probably_damaging(0.999) TCGA-SY-A9G5-01 9 34257864 34257864 C T KIF24 Missense_Mutation p.D581N 0.39 deleterious(0.02) probably_damaging(0.979) TCGA-SY-A9G5-01 9 35092201 35092201 G C PIGO Missense_Mutation p.F561L 0.41 tolerated(0.31) benign(0.217) TCGA-SY-A9G5-01 9 6007220 6007220 C G KIAA2026 Missense_Mutation p.E190Q 0.32 deleterious(0) benign(0.073) TCGA-SY-A9G5-01 9 6007299 6007299 C T KIAA2026 Silent p.L163L 0.28 TCGA-SY-A9G5-01 9 6506103 6506103 A G UHRF2 Missense_Mutation p.N778S 0.44 tolerated(0.82) benign(0.014) TCGA-SY-A9G5-01 9 6605215 6605215 G A GLDC Silent p.V259V 0.46 TCGA-SY-A9G5-01 9 72659011 72659011 C T MAMDC2 5'UTR 0.70 TCGA-SY-A9G5-01 9 75526879 75526879 C G ALDH1A1 Missense_Mutation p.E399Q 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-SY-A9G5-01 9 86495312 86495312 A G KIF27 Missense_Mutation p.M848T 0.29 deleterious(0) possibly_damaging(0.756) TCGA-SY-A9G5-01 9 94486156 94486156 C T ROR2 Missense_Mutation p.V874I 0.28 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-SY-A9G5-01 9 95277372 95277372 G A ECM2 Nonsense_Mutation p.Q199* 0.46 TCGA-SY-A9G5-01 X 101152962 101152962 C T ZMAT1 Missense_Mutation p.M128I 0.48 tolerated(0.23) benign(0.009) TCGA-SY-A9G5-01 X 101572254 101572254 G T NXF2 Intron 0.14 TCGA-SY-A9G5-01 X 107977714 107977714 G A IRS4 Nonsense_Mutation p.Q621* 0.23 TCGA-SY-A9G5-01 X 108636233 108636233 G A GUCY2F Missense_Mutation p.R826W 0.50 tolerated(0.08) benign(0.005) TCGA-SY-A9G5-01 X 118675315 118675315 C G CXorf56 Missense_Mutation p.M194I 0.38 tolerated(0.19) benign(0.007) TCGA-SY-A9G5-01 X 118675341 118675341 C T CXorf56 Missense_Mutation p.E186K 0.42 deleterious(0.01) probably_damaging(0.962) TCGA-SY-A9G5-01 X 123019711 123019711 C T XIAP Missense_Mutation p.H67Y 0.61 tolerated(0.22) possibly_damaging(0.723) TCGA-SY-A9G5-01 X 135428786 135428786 C T GPR112 Missense_Mutation p.S974L 0.39 tolerated(1) benign(0.001) TCGA-SY-A9G5-01 X 135956335 135956335 C T RBMX Missense_Mutation p.R381Q 0.25 tolerated(0.06) unknown(0) TCGA-SY-A9G5-01 X 153780345 153780345 C T IKBKG Missense_Mutation p.S111L 0.50 tolerated(0.14) benign(0.003) TCGA-SY-A9G5-01 X 1584472 1584472 G C P2RY8 Missense_Mutation p.S327C 0.13 deleterious(0) probably_damaging(0.959) TCGA-SY-A9G5-01 X 22051095 22051095 C G PHEX 5'UTR 0.48 TCGA-SY-A9G5-01 X 39933787 39933787 G A BCOR Missense_Mutation p.S271L 0.56 deleterious(0.04) probably_damaging(0.992) TCGA-SY-A9G5-01 X 40460035 40460035 C G ATP6AP2 Missense_Mutation p.L254V 0.49 tolerated(0.06) benign(0.078) TCGA-SY-A9G5-01 X 48932855 48932855 C T WDR45 Missense_Mutation p.E306K 0.50 tolerated(0.16) benign(0.395) TCGA-SY-A9G5-01 X 49074242 49074242 C T CACNA1F Missense_Mutation p.E1032K 0.52 tolerated(0.45) possibly_damaging(0.474) TCGA-SY-A9G5-01 X 50377470 50377470 G C SHROOM4 Missense_Mutation p.Q535E 0.57 tolerated(0.38) benign(0.015) TCGA-SY-A9G5-01 X 51637851 51637851 G C MAGED1 Silent p.L58L 0.37 TCGA-SY-A9G5-01 X 54282208 54282208 C G WNK3 Missense_Mutation p.E739Q 0.56 deleterious(0.04) benign(0.08) TCGA-SY-A9G5-01 X 69424939 69424939 G C DGAT2L6 Missense_Mutation p.E333Q 0.48 deleterious(0.04) benign(0.212) TCGA-SY-A9G5-01 X 70683804 70683804 G A TAF1 Missense_Mutation p.V1864I 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-SY-A9G5-01 X 71571612 71571612 C T HDAC8 Missense_Mutation p.R361Q 0.20 tolerated(0.28) benign(0) TCGA-SY-A9G5-01 X 71904407 71904407 C G PHKA1 Missense_Mutation p.D160H 0.55 deleterious(0) probably_damaging(0.968) TCGA-SY-A9G5-01 X 73960548 73960548 C G KIAA2022 Missense_Mutation p.D1282H 0.47 deleterious(0) possibly_damaging(0.718) TCGA-SY-A9G5-01 X 78427093 78427093 C G GPR174 Missense_Mutation p.P197A 0.50 deleterious(0) probably_damaging(1) TCGA-SY-A9G5-01 X 9912780 9912780 G T SHROOM2 Nonsense_Mutation p.E1471* 0.38 TCGA-UY-A78K-01 10 101371022 101371022 T A SLC25A28 Missense_Mutation p.S227C 0.08 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 10 102794532 102794532 T A SFXN3 Missense_Mutation p.F31L 0.29 deleterious(0) possibly_damaging(0.777) TCGA-UY-A78K-01 10 104230693 104230694 CT - TMEM180 Frame_Shift_Del p.S176Cfs*43 0.14 TCGA-UY-A78K-01 10 125528081 125528081 G A CPXM2 Silent p.P420P 0.48 TCGA-UY-A78K-01 10 13320329 13320329 A G PHYH Missense_Mutation p.L330P 0.10 tolerated(0.09) benign(0.078) TCGA-UY-A78K-01 10 15883574 15883574 C G FAM188A Missense_Mutation p.C87S 0.07 deleterious(0.02) benign(0.079) TCGA-UY-A78K-01 10 18292181 18292181 T C SLC39A12 Missense_Mutation p.F614S 0.39 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 10 18803947 18803947 G A CACNB2 Intron 0.06 TCGA-UY-A78K-01 10 22617548 22617548 T C BMI1 Missense_Mutation p.L164S 0.05 deleterious(0) probably_damaging(0.993) TCGA-UY-A78K-01 10 26505738 26505738 G T GAD2 5'UTR 0.08 TCGA-UY-A78K-01 10 27475391 27475391 G A MASTL Missense_Mutation p.D856N 0.04 tolerated(0.15) benign(0.011) TCGA-UY-A78K-01 10 27826906 27826906 A G RAB18 Missense_Mutation p.K183E 0.11 tolerated(0.56) benign(0.008) TCGA-UY-A78K-01 10 28283854 28283854 A G ARMC4 Missense_Mutation p.V73A 0.19 tolerated(1) benign(0.001) TCGA-UY-A78K-01 10 35318557 35318557 A C CUL2 Silent p.G485G 0.08 TCGA-UY-A78K-01 10 37447497 37447497 T A ANKRD30A Missense_Mutation p.M572K 0.07 tolerated(1) benign(0.027) TCGA-UY-A78K-01 10 38666988 38666988 A T HSD17B7P2 RNA 0.26 TCGA-UY-A78K-01 10 43318678 43318678 T A BMS1 Missense_Mutation p.F1082Y 0.13 tolerated(0.13) possibly_damaging(0.549) TCGA-UY-A78K-01 10 43622158 43622158 A G RET Missense_Mutation p.N1059D 0.12 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-UY-A78K-01 10 46159187 46159187 C G ZFAND4 5'UTR 0.12 TCGA-UY-A78K-01 10 55569078 55569078 C T PCDH15 Missense_Mutation p.D512N 0.06 deleterious_low_confidence(0) unknown(0) TCGA-UY-A78K-01 10 55569097 55569097 C T PCDH15 Silent p.Q505Q 0.11 TCGA-UY-A78K-01 10 58119295 58119295 T C ZWINT Splice_Site p.X142_splice 0.10 TCGA-UY-A78K-01 10 69648780 69648780 G A SIRT1 Missense_Mutation p.E230K 0.20 deleterious(0) probably_damaging(0.971) TCGA-UY-A78K-01 10 71899715 71899715 G A TYSND1 Missense_Mutation p.R556W 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-UY-A78K-01 10 75138735 75138735 G T ANXA7 Nonsense_Mutation p.Y426* 0.24 TCGA-UY-A78K-01 10 77542663 77542663 C G C10orf11 5'UTR 0.27 TCGA-UY-A78K-01 10 7840983 7840983 C T ATP5C1 Missense_Mutation p.P85L 0.28 tolerated(0.05) benign(0.152) TCGA-UY-A78K-01 10 78708914 78708915 - T KCNMA1 Frame_Shift_Ins p.V882Sfs*13 0.20 TCGA-UY-A78K-01 10 79769719 79769719 A G POLR3A Missense_Mutation p.F558S 0.24 deleterious(0) probably_damaging(0.992) TCGA-UY-A78K-01 10 8007409 8007409 A G TAF3 Missense_Mutation p.K646E 0.22 deleterious_low_confidence(0.05) benign(0.074) TCGA-UY-A78K-01 10 82369198 82369198 G C SH2D4B Silent p.P292P 0.26 TCGA-UY-A78K-01 10 95121272 95121272 G T MYOF Missense_Mutation p.P971T 0.05 tolerated(0.08) benign(0.008) TCGA-UY-A78K-01 10 96540295 96540295 C T CYP2C19 Missense_Mutation p.P174L 0.11 deleterious(0.01) possibly_damaging(0.467) TCGA-UY-A78K-01 10 98994983 98994983 C G ARHGAP19 Silent p.G425G 0.07 TCGA-UY-A78K-01 10 99205549 99205549 G A EXOSC1 Silent p.R29R 0.33 TCGA-UY-A78K-01 11 100170094 100170094 T C CNTN5 Silent p.F862F 0.09 TCGA-UY-A78K-01 11 103306751 103306751 T C DYNC2H1 Silent p.L4156L 0.09 TCGA-UY-A78K-01 11 10546791 10546791 C A RNF141 Missense_Mutation p.D128Y 0.14 tolerated(0.08) benign(0.121) TCGA-UY-A78K-01 11 10555684 10555684 G C RNF141 Missense_Mutation p.Q8E 0.22 tolerated_low_confidence(0.28) benign(0.061) TCGA-UY-A78K-01 11 108381331 108381331 C G EXPH5 Missense_Mutation p.G1635R 0.09 deleterious(0.02) probably_damaging(0.926) TCGA-UY-A78K-01 11 110450778 110450778 A G ARHGAP20 Silent p.S964S 0.11 TCGA-UY-A78K-01 11 111896985 111896985 G C DLAT Missense_Mutation p.E115Q 0.21 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 11 117870299 117870299 C A IL10RA Missense_Mutation p.S560R 0.18 tolerated(0.17) benign(0.023) TCGA-UY-A78K-01 11 118939921 118939921 A G VPS11 Missense_Mutation p.I68V 0.08 tolerated(0.65) benign(0.001) TCGA-UY-A78K-01 11 118947623 118947623 G C VPS11 Missense_Mutation p.E418Q 0.11 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 11 118968230 118968230 T A DPAGT1 Missense_Mutation p.S317C 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 11 119215065 119215065 A T MFRP Missense_Mutation p.F312Y 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-UY-A78K-01 11 120976571 120976571 G A TECTA Nonsense_Mutation p.W32* 0.13 TCGA-UY-A78K-01 11 12345541 12345541 G C MICALCL Missense_Mutation p.R520T 0.16 deleterious(0) possibly_damaging(0.87) TCGA-UY-A78K-01 11 124440496 124440496 G C OR8A1 Missense_Mutation p.G178R 0.08 deleterious(0.02) possibly_damaging(0.839) TCGA-UY-A78K-01 11 124440497 124440497 G T OR8A1 Missense_Mutation p.G178V 0.08 tolerated(0.13) benign(0.05) TCGA-UY-A78K-01 11 124489537 124489537 T C PANX3 Silent p.C295C 0.05 TCGA-UY-A78K-01 11 129999940 129999940 G A APLP2 Missense_Mutation p.R488H 0.09 tolerated(0.33) probably_damaging(0.99) TCGA-UY-A78K-01 11 133715273 133715273 T C SPATA19 Missense_Mutation p.I23M 0.15 deleterious_low_confidence(0.04) benign(0.022) TCGA-UY-A78K-01 11 13402716 13402716 G A ARNTL Missense_Mutation p.G510E 0.11 tolerated(0.06) probably_damaging(1) TCGA-UY-A78K-01 11 1432696 1432696 C T BRSK2 Missense_Mutation p.S21F 0.54 deleterious_low_confidence(0) benign(0.001) TCGA-UY-A78K-01 11 15134092 15134092 C A INSC Missense_Mutation p.S26Y 0.37 deleterious_low_confidence(0.01) benign(0.021) TCGA-UY-A78K-01 11 18291391 18291391 G C SAA1 Missense_Mutation p.E120Q 0.17 tolerated(0.16) benign(0.094) TCGA-UY-A78K-01 11 18362937 18362937 G T GTF2H1 Missense_Mutation p.C246F 0.13 deleterious(0.01) possibly_damaging(0.844) TCGA-UY-A78K-01 11 20411359 20411359 G A PRMT3 Missense_Mutation p.M78I 0.07 benign(0.009) TCGA-UY-A78K-01 11 27390325 27390325 C G LGR4 Missense_Mutation p.D649H 0.19 tolerated(0.23) benign(0.009) TCGA-UY-A78K-01 11 31327782 31327782 G A DCDC1 Silent p.T196T 0.07 TCGA-UY-A78K-01 11 34680445 34680445 G C EHF Missense_Mutation p.K312N 0.25 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 11 4703559 4703559 G T OR51E2 Missense_Mutation p.P128Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 11 49831447 49831447 C A RP11-707M1.1 RNA 0.47 TCGA-UY-A78K-01 11 5153569 5153569 G A OR52A5 Nonsense_Mutation p.Q102* 0.10 TCGA-UY-A78K-01 11 5373120 5373120 T C OR51B6 Missense_Mutation p.L128S 0.17 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 11 55322510 55322510 C A OR4C15 Missense_Mutation p.T243N 0.14 deleterious_low_confidence(0.01) benign(0.084) TCGA-UY-A78K-01 11 55406720 55406720 T A OR4P4 Missense_Mutation p.M296K 0.13 deleterious(0) benign(0.365) TCGA-UY-A78K-01 11 55606921 55606921 T G OR5D16 Missense_Mutation p.S232A 0.36 deleterious(0.01) probably_damaging(0.939) TCGA-UY-A78K-01 11 5565817 5565817 G T OR52H1 Missense_Mutation p.L313I 0.17 tolerated(0.43) benign(0.003) TCGA-UY-A78K-01 11 56057934 56057934 G T OR8H1 Missense_Mutation p.A202D 0.20 deleterious(0) possibly_damaging(0.795) TCGA-UY-A78K-01 11 56510804 56510804 C G OR9G4 Missense_Mutation p.G162R 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-UY-A78K-01 11 57235367 57235367 A G RTN4RL2 Missense_Mutation p.Q106R 0.07 tolerated(0.64) benign(0.145) TCGA-UY-A78K-01 11 57947751 57947751 G A OR9Q1 Missense_Mutation p.E279K 0.13 deleterious(0) benign(0.001) TCGA-UY-A78K-01 11 63994432 63994432 G A NUDT22 Missense_Mutation p.R103Q 0.18 tolerated(0.47) benign(0.006) TCGA-UY-A78K-01 11 64023013 64023013 C T PLCB3 Silent p.N174N 0.07 TCGA-UY-A78K-01 11 64023962 64023962 G T PLCB3 Missense_Mutation p.Q271H 0.08 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 11 64897639 64897639 A T SYVN1 Missense_Mutation p.S415T 0.21 tolerated(0.63) unknown(0) TCGA-UY-A78K-01 11 64940163 64940163 A T SPDYC Silent p.A175A 0.09 TCGA-UY-A78K-01 11 66053209 66053209 C G YIF1A Missense_Mutation p.V150L 0.08 tolerated(0.19) benign(0.106) TCGA-UY-A78K-01 11 67049330 67049330 C T ADRBK1 Silent p.V288V 0.06 TCGA-UY-A78K-01 11 67200837 67200837 G A RPS6KB2 Silent p.K275K 0.08 TCGA-UY-A78K-01 11 71941437 71941437 G A INPPL1 Silent p.Q374Q 0.12 TCGA-UY-A78K-01 11 71948264 71948264 C T INPPL1 Silent p.V992V 0.05 TCGA-UY-A78K-01 11 73076736 73076736 C T ARHGEF17 Silent p.I1913I 0.17 TCGA-UY-A78K-01 11 74716601 74716602 TG - NEU3 Frame_Shift_Del p.S152Rfs*21 0.10 TCGA-UY-A78K-01 11 77885068 77885068 A G KCTD21 Missense_Mutation p.L178S 0.11 tolerated(0.88) probably_damaging(0.969) TCGA-UY-A78K-01 11 86120324 86120324 G A CCDC81 Missense_Mutation p.E379K 0.05 tolerated(0.12) benign(0.043) TCGA-UY-A78K-01 11 8751900 8751900 C T ST5 Missense_Mutation p.G313R 0.10 tolerated(0.63) possibly_damaging(0.77) TCGA-UY-A78K-01 11 88241720 88241720 C T GRM5 3'UTR 0.30 TCGA-UY-A78K-01 11 88924455 88924455 G A TYR Missense_Mutation p.G302E 0.28 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 11 93471426 93471426 C A TAF1D Missense_Mutation p.G103V 0.11 deleterious(0.04) possibly_damaging(0.824) TCGA-UY-A78K-01 11 93540688 93540688 A G MED17 Missense_Mutation p.I491V 0.08 tolerated(0.58) benign(0.001) TCGA-UY-A78K-01 11 94197307 94197307 G A MRE11A Silent p.F399F 0.11 TCGA-UY-A78K-01 12 100708346 100708347 CA - SCYL2 Frame_Shift_Del p.Q351Vfs*33 0.10 TCGA-UY-A78K-01 12 104125356 104125356 A C STAB2 Missense_Mutation p.Q1742H 0.14 deleterious(0.05) benign(0.004) TCGA-UY-A78K-01 12 104337524 104337524 G A HSP90B1 Silent p.K633K 0.09 TCGA-UY-A78K-01 12 105385508 105385509 - CA C12orf45 Frame_Shift_Ins p.F75Nfs*13 0.18 TCGA-UY-A78K-01 12 105600932 105600932 G C APPL2 Silent p.L182L 0.10 TCGA-UY-A78K-01 12 108051474 108051474 T C BTBD11 Silent p.S1098S 0.14 TCGA-UY-A78K-01 12 109921380 109921380 G A UBE3B Silent p.S8S 0.10 TCGA-UY-A78K-01 12 110236473 110236473 G A TRPV4 Silent p.L366L 0.08 TCGA-UY-A78K-01 12 111088078 111088078 G A HVCN1 Silent p.I217I 0.16 TCGA-UY-A78K-01 12 113440868 113440868 C A OAS2 Missense_Mutation p.N380K 0.11 tolerated(0.3) benign(0.1) TCGA-UY-A78K-01 12 113617118 113617118 C G DDX54 Missense_Mutation p.D132H 0.11 deleterious(0) probably_damaging(0.914) TCGA-UY-A78K-01 12 11546301 11546301 A T PRB2 Silent p.S237S 0.16 TCGA-UY-A78K-01 12 120654484 120654484 C G PXN Intron 0.19 TCGA-UY-A78K-01 12 120759955 120759955 G A PLA2G1B 3'UTR 0.09 TCGA-UY-A78K-01 12 121176138 121176138 A C ACADS Missense_Mutation p.K227T 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A78K-01 12 122018741 122018741 T C KDM2B Missense_Mutation p.K26E 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-UY-A78K-01 12 123068997 123068997 G A KNTC1 Missense_Mutation p.D1146N 0.15 deleterious(0.01) benign(0.346) TCGA-UY-A78K-01 12 123238274 123238274 G T DENR Missense_Mutation p.S9I 0.12 tolerated_low_confidence(0.09) benign(0.005) TCGA-UY-A78K-01 12 123340863 123340863 T C HIP1R Missense_Mutation p.V458A 0.15 deleterious(0) benign(0.144) TCGA-UY-A78K-01 12 123805326 123805326 A G SBNO1 Missense_Mutation p.L804S 0.15 tolerated(0.08) benign(0.031) TCGA-UY-A78K-01 12 124097759 124097759 C T DDX55 Missense_Mutation p.L262F 0.07 deleterious(0) probably_damaging(0.989) TCGA-UY-A78K-01 12 124345614 124345614 G C DNAH10 Missense_Mutation p.E2151Q 0.11 probably_damaging(0.996) TCGA-UY-A78K-01 12 129566553 129566553 C T TMEM132D Silent p.E558E 0.10 TCGA-UY-A78K-01 12 133732700 133732700 G A ZNF10 Missense_Mutation p.E290K 0.08 deleterious(0.03) possibly_damaging(0.522) TCGA-UY-A78K-01 12 1943628 1943628 C A LRTM2 Missense_Mutation p.P285Q 0.10 tolerated(0.08) possibly_damaging(0.878) TCGA-UY-A78K-01 12 21196458 21196458 T A SLCO1B7 Missense_Mutation p.N259K 0.20 tolerated(0.61) benign(0.004) TCGA-UY-A78K-01 12 21422631 21422631 G T SLCO1A2 Missense_Mutation p.L622I 0.10 tolerated(0.39) benign(0.007) TCGA-UY-A78K-01 12 25249845 25249845 C T LRMP Missense_Mutation p.S203F 0.10 deleterious(0) possibly_damaging(0.732) TCGA-UY-A78K-01 12 26640097 26640097 C A ITPR2 Nonsense_Mutation p.E1820* 0.06 TCGA-UY-A78K-01 12 27234214 27234214 C T C12orf71 Missense_Mutation p.V235M 0.06 deleterious(0.05) possibly_damaging(0.673) TCGA-UY-A78K-01 12 28702105 28702105 A G CCDC91 Silent p.%3D 0.10 TCGA-UY-A78K-01 12 29460811 29460811 A T FAR2 Intron 0.11 TCGA-UY-A78K-01 12 30881919 30881919 C T CAPRIN2 Missense_Mutation p.G482E 0.05 tolerated_low_confidence(0.09) possibly_damaging(0.474) TCGA-UY-A78K-01 12 30882036 30882036 T A CAPRIN2 Missense_Mutation p.K443I 0.04 deleterious(0) possibly_damaging(0.735) TCGA-UY-A78K-01 12 31106947 31106947 C T TSPAN11 Nonsense_Mutation p.Q8* 0.14 TCGA-UY-A78K-01 12 39756904 39756904 T C KIF21A Missense_Mutation p.N339D 0.08 deleterious(0) possibly_damaging(0.879) TCGA-UY-A78K-01 12 40742271 40742271 G A LRRK2 Missense_Mutation p.C2114Y 0.23 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 12 41408078 41408078 G T CNTN1 Missense_Mutation p.R721I 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-UY-A78K-01 12 44180517 44180517 A T IRAK4 Nonstop_Mutation p.*461Lext*8 0.11 TCGA-UY-A78K-01 12 49579344 49579344 G T TUBA1A Missense_Mutation p.L269M 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.68) TCGA-UY-A78K-01 12 49954106 49954106 C T MCRS1 Missense_Mutation p.E298K 0.08 deleterious(0) possibly_damaging(0.569) TCGA-UY-A78K-01 12 53042076 53042076 G A KRT2 Missense_Mutation p.L335F 0.06 deleterious(0) probably_damaging(0.993) TCGA-UY-A78K-01 12 53668687 53668687 G T ESPL1 Silent p.L531L 0.11 TCGA-UY-A78K-01 12 53803167 53803167 A G SP1 Silent p.K622K 0.22 TCGA-UY-A78K-01 12 54893205 54893205 T C NCKAP1L Missense_Mutation p.Y57H 0.07 tolerated(0.58) benign(0.061) TCGA-UY-A78K-01 12 54962965 54962965 C G PDE1B Intron 0.21 TCGA-UY-A78K-01 12 56336046 56336046 A G DGKA Silent p.G475G 0.12 TCGA-UY-A78K-01 12 56495809 56495809 T C ERBB3 Silent p.L1333L 0.08 TCGA-UY-A78K-01 12 56536901 56536901 A G ESYT1 Missense_Mutation p.K1040E 0.14 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 12 56718405 56718405 A T PAN2 Missense_Mutation p.L563Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 12 57919782 57919782 G A MBD6 Missense_Mutation p.R344Q 0.06 deleterious_low_confidence(0) unknown(0) TCGA-UY-A78K-01 12 6909521 6909521 A T CD4 Missense_Mutation p.K33I 0.14 tolerated(0.1) benign(0.079) TCGA-UY-A78K-01 12 7050593 7050593 C G ATN1 Missense_Mutation p.Q1139E 0.12 probably_damaging(0.945) TCGA-UY-A78K-01 12 7890171 7890171 C A CLEC4C Splice_Site p.X79_splice 0.17 TCGA-UY-A78K-01 12 85460553 85460553 G A LRRIQ1 Missense_Mutation p.E858K 0.07 deleterious(0.01) probably_damaging(0.983) TCGA-UY-A78K-01 12 91572325 91572325 T C DCN Missense_Mutation p.K2R 0.11 tolerated(0.25) benign(0.007) TCGA-UY-A78K-01 12 93246025 93246025 C T EEA1 Missense_Mutation p.E190K 0.13 deleterious(0) benign(0.184) TCGA-UY-A78K-01 12 94690962 94690962 C T PLXNC1 Intron 0.10 TCGA-UY-A78K-01 12 95604663 95604663 A C FGD6 Missense_Mutation p.L133V 0.09 tolerated_low_confidence(0.16) possibly_damaging(0.611) TCGA-UY-A78K-01 12 96371825 96371825 C A HAL Silent p.S517S 0.21 TCGA-UY-A78K-01 12 9994918 9994918 A G KLRF1 Splice_Site p.X160_splice 0.06 TCGA-UY-A78K-01 13 101763501 101763501 G A NALCN Nonsense_Mutation p.Q757* 0.08 TCGA-UY-A78K-01 13 108882543 108882543 A C ABHD13 Missense_Mutation p.E326A 0.07 tolerated(0.21) benign(0) TCGA-UY-A78K-01 13 110828802 110828802 T G COL4A1 Silent p.P1009P 0.09 TCGA-UY-A78K-01 13 110830275 110830275 G T COL4A1 Missense_Mutation p.S877Y 0.08 benign(0.418) TCGA-UY-A78K-01 13 111973220 111973220 C A TEX29 5'UTR 0.08 TCGA-UY-A78K-01 13 113173334 113173334 C T TUBGCP3 Nonsense_Mutation p.W635* 0.35 TCGA-UY-A78K-01 13 114009779 114009779 T C GRTP1 Missense_Mutation p.K67E 0.15 deleterious(0) probably_damaging(0.956) TCGA-UY-A78K-01 13 114469135 114469135 C G TMEM255B Missense_Mutation p.L32V 0.14 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 13 20039395 20039395 C T TPTE2 Missense_Mutation p.E226K 0.06 deleterious(0.02) benign(0.067) TCGA-UY-A78K-01 13 21165118 21165118 C G IFT88 Missense_Mutation p.L84V 0.04 tolerated(0.15) benign(0.203) TCGA-UY-A78K-01 13 27680082 27680082 C G USP12 Splice_Site p.X44_splice 0.11 TCGA-UY-A78K-01 13 30104737 30104737 A G SLC7A1 Silent p.V214V 0.07 TCGA-UY-A78K-01 13 30110316 30110316 T C SLC7A1 Missense_Mutation p.K4E 0.06 tolerated(0.13) benign(0.04) TCGA-UY-A78K-01 13 32759286 32759286 G A FRY Splice_Site p.X1107_splice 0.13 TCGA-UY-A78K-01 13 33315221 33315221 C A PDS5B Missense_Mutation p.P804T 0.09 tolerated(0.51) benign(0.157) TCGA-UY-A78K-01 13 36229815 36229815 C G NBEA Missense_Mutation p.S2743C 0.13 deleterious(0) probably_damaging(0.992) TCGA-UY-A78K-01 13 41303696 41303696 G C MRPS31 Missense_Mutation p.L334V 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 13 41834630 41834630 T C MTRF1 Silent p.K138K 0.14 TCGA-UY-A78K-01 13 46542030 46542033 CTCT - ZC3H13 Frame_Shift_Del p.R1309Sfs*53 0.09 TCGA-UY-A78K-01 13 52158916 52158916 G C WDFY2 Silent p.V31V 0.12 TCGA-UY-A78K-01 13 52515306 52515306 C T ATP7B Missense_Mutation p.R1156H 0.08 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 13 58207645 58207645 A T PCDH17 Missense_Mutation p.Q322L 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A78K-01 13 61083966 61083966 A G TDRD3 Missense_Mutation p.M310V 0.08 tolerated(0.06) possibly_damaging(0.835) TCGA-UY-A78K-01 13 77589587 77589587 G C FBXL3 Silent p.L200L 0.09 TCGA-UY-A78K-01 13 77671712 77671712 G T MYCBP2 Missense_Mutation p.L3155I 0.07 probably_damaging(0.968) TCGA-UY-A78K-01 13 77671944 77671944 G A MYCBP2 Silent p.I3077I 0.06 TCGA-UY-A78K-01 13 79175712 79175712 C A POU4F1 Missense_Mutation p.E366D 0.08 deleterious(0) unknown(0) TCGA-UY-A78K-01 13 79908540 79908540 T C RBM26 Missense_Mutation p.Q893R 0.08 tolerated(0.53) benign(0.269) TCGA-UY-A78K-01 14 101438445 101438445 C G SNORD114-14 RNA 0.31 TCGA-UY-A78K-01 14 103372111 103372111 C G TRAF3 Missense_Mutation p.P566R 0.16 deleterious(0.04) possibly_damaging(0.865) TCGA-UY-A78K-01 14 106236190 106236190 G T IGHG3 Missense_Mutation p.F205L 0.14 tolerated(0.15) possibly_damaging(0.658) TCGA-UY-A78K-01 14 20248845 20248845 C T OR4M1 Missense_Mutation p.R122C 0.29 deleterious(0.02) benign(0.011) TCGA-UY-A78K-01 14 20296168 20296168 G C OR4N2 Silent p.L187L 0.04 TCGA-UY-A78K-01 14 20296169 20296169 G T OR4N2 Missense_Mutation p.A188S 0.04 deleterious(0.03) probably_damaging(1) TCGA-UY-A78K-01 14 23856971 23856971 A C MYH6 Silent p.L1507L 0.06 TCGA-UY-A78K-01 14 23856977 23856977 C T MYH6 Silent p.K1505K 0.05 TCGA-UY-A78K-01 14 23863298 23863298 G T MYH6 Missense_Mutation p.D888E 0.08 deleterious(0.04) possibly_damaging(0.606) TCGA-UY-A78K-01 14 24737603 24737603 C T RABGGTA Missense_Mutation p.D344N 0.18 tolerated(0.08) probably_damaging(0.965) TCGA-UY-A78K-01 14 24877356 24877356 C A NYNRIN Silent p.T160T 0.14 TCGA-UY-A78K-01 14 25042868 25042868 A G CTSG Missense_Mutation p.L248P 0.12 tolerated(0.3) benign(0.001) TCGA-UY-A78K-01 14 31597902 31597902 T C HECTD1 Missense_Mutation p.N1559D 0.13 tolerated(0.08) possibly_damaging(0.899) TCGA-UY-A78K-01 14 36008770 36008770 G A RALGAPA1 Missense_Mutation p.S2077F 0.44 deleterious(0) probably_damaging(0.992) TCGA-UY-A78K-01 14 36987031 36987031 C A NKX2-1 Nonsense_Mutation p.E220* 0.21 TCGA-UY-A78K-01 14 50176509 50176509 T A KLHDC1 Missense_Mutation p.F84I 0.11 deleterious(0) probably_damaging(0.995) TCGA-UY-A78K-01 14 50583007 50583007 G T VCPKMT Silent p.L88L 0.18 TCGA-UY-A78K-01 14 50734590 50734590 G C L2HGDH Missense_Mutation p.F315L 0.11 deleterious(0.04) probably_damaging(0.983) TCGA-UY-A78K-01 14 55817477 55817477 T A FBXO34 Missense_Mutation p.F123L 0.09 deleterious(0) probably_damaging(0.995) TCGA-UY-A78K-01 14 64701717 64701717 C T ESR2 Silent p.L459L 0.49 TCGA-UY-A78K-01 14 71063382 71063382 G C MED6 Missense_Mutation p.Q74E 0.14 deleterious(0) probably_damaging(0.98) TCGA-UY-A78K-01 14 74438564 74438564 C G ENTPD5 Missense_Mutation p.A359P 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 14 74969933 74969933 G A LTBP2 Missense_Mutation p.P1626L 0.19 tolerated(0.36) probably_damaging(1) TCGA-UY-A78K-01 14 76928979 76928979 C A ESRRB Nonsense_Mutation p.C163* 0.10 TCGA-UY-A78K-01 14 76928980 76928980 C A ESRRB Missense_Mutation p.L164I 0.11 deleterious(0.05) probably_damaging(0.973) TCGA-UY-A78K-01 14 88477848 88477848 G T GPR65 Missense_Mutation p.K219N 0.12 tolerated(0.39) benign(0) TCGA-UY-A78K-01 14 88951495 88951495 G - PTPN21 Frame_Shift_Del p.Q335Sfs*4 0.30 TCGA-UY-A78K-01 14 92909097 92909097 C T SLC24A4 Silent p.I173I 0.09 TCGA-UY-A78K-01 14 94595894 94595894 C A IFI27L2 Splice_Site p.X3_splice 0.16 TCGA-UY-A78K-01 14 94780725 94780725 G T SERPINA6 Silent p.A87A 0.08 TCGA-UY-A78K-01 14 94780726 94780726 G T SERPINA6 Missense_Mutation p.A87D 0.10 deleterious(0.01) benign(0.099) TCGA-UY-A78K-01 15 100230548 100230548 G T MEF2A Missense_Mutation p.G260V 0.17 tolerated(0.07) benign(0.271) TCGA-UY-A78K-01 15 22863108 22863109 - A TUBGCP5 Frame_Shift_Ins p.D713Rfs*25 0.12 TCGA-UY-A78K-01 15 23931260 23931260 G A NDN 3'UTR 0.12 TCGA-UY-A78K-01 15 24923472 24923472 A G NPAP1 Missense_Mutation p.I820V 0.20 tolerated(0.65) benign(0.041) TCGA-UY-A78K-01 15 25310200 25310200 A C SNORD116-6 RNA 0.07 TCGA-UY-A78K-01 15 29346160 29346160 C A APBA2 Missense_Mutation p.H25N 0.08 deleterious_low_confidence(0.02) benign(0.04) TCGA-UY-A78K-01 15 31819389 31819389 T A OTUD7A Nonsense_Mutation p.K259* 0.07 TCGA-UY-A78K-01 15 33955004 33955004 A G RYR3 Missense_Mutation p.H1758R 0.15 benign(0.002) TCGA-UY-A78K-01 15 34060893 34060894 AG - RYR3 Frame_Shift_Del p.R2914Nfs*6 0.10 TCGA-UY-A78K-01 15 34528366 34528366 C G SLC12A6 Missense_Mutation p.R1026P 0.10 tolerated(0.08) benign(0.201) TCGA-UY-A78K-01 15 38643577 38643577 G T SPRED1 Missense_Mutation p.R349S 0.18 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 15 40678672 40678672 C T KNSTRN Silent p.I138I 0.20 TCGA-UY-A78K-01 15 41961909 41961909 C T MGA Nonsense_Mutation p.Q273* 0.36 TCGA-UY-A78K-01 15 44028589 44028589 T C RNU6-354P 5'Flank 0.09 TCGA-UY-A78K-01 15 44166475 44166475 C T FRMD5 Missense_Mutation p.E441K 0.07 tolerated(0.16) benign(0.26) TCGA-UY-A78K-01 15 48054483 48054483 C T SEMA6D Missense_Mutation p.R209C 0.42 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 15 50904749 50904749 G C TRPM7 Missense_Mutation p.S683C 0.07 deleterious(0) possibly_damaging(0.895) TCGA-UY-A78K-01 15 57730788 57730788 T C CGNL1 Silent p.N197N 0.12 TCGA-UY-A78K-01 15 62217670 62217670 T A VPS13C Missense_Mutation p.K2198N 0.09 tolerated(0.23) benign(0.131) TCGA-UY-A78K-01 15 64968357 64968357 A G ZNF609 Missense_Mutation p.S1102G 0.39 tolerated(0.24) benign(0.157) TCGA-UY-A78K-01 15 65491409 65491409 A T CILP Silent p.V405V 0.13 TCGA-UY-A78K-01 15 66727426 66727426 A T MAP2K1 Nonsense_Mutation p.K48* 0.08 TCGA-UY-A78K-01 15 72338216 72338216 T A MYO9A Missense_Mutation p.K230I 0.41 deleterious(0) possibly_damaging(0.633) TCGA-UY-A78K-01 15 72338661 72338661 G C MYO9A Missense_Mutation p.P82A 0.38 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 15 72954780 72954780 G C GOLGA6B Missense_Mutation p.M345I 0.45 deleterious(0.01) benign(0.043) TCGA-UY-A78K-01 15 72954783 72954783 C T GOLGA6B Silent p.L346L 0.46 TCGA-UY-A78K-01 15 73044710 73044710 A T ADPGK Missense_Mutation p.F488Y 0.08 tolerated(0.08) benign(0.003) TCGA-UY-A78K-01 15 73562506 73562506 A G NEO1 Missense_Mutation p.K884E 0.12 deleterious(0.01) probably_damaging(0.956) TCGA-UY-A78K-01 15 74948410 74948410 C A EDC3 Splice_Site p.X162_splice 0.17 TCGA-UY-A78K-01 15 75586794 75586794 C T GOLGA6D Missense_Mutation p.S687F 0.10 deleterious_low_confidence(0.02) benign(0.051) TCGA-UY-A78K-01 15 75809618 75809618 T C PTPN9 Silent p.K170K 0.10 TCGA-UY-A78K-01 15 75809620 75809620 T C PTPN9 Missense_Mutation p.K170E 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A78K-01 15 83456124 83456124 C T FSD2 Missense_Mutation p.E7K 0.14 tolerated_low_confidence(0.07) benign(0.036) TCGA-UY-A78K-01 15 85383880 85383880 A C ALPK3 Missense_Mutation p.E659A 0.11 tolerated_low_confidence(0.1) benign(0.01) TCGA-UY-A78K-01 15 89755130 89755130 G C RLBP1 Missense_Mutation p.I176M 0.08 deleterious(0.04) probably_damaging(0.951) TCGA-UY-A78K-01 15 92988138 92988138 G A ST8SIA2 Missense_Mutation p.R274H 0.06 possibly_damaging(0.581) TCGA-UY-A78K-01 16 1470433 1470433 T A C16orf91 Silent p.G228G 0.07 TCGA-UY-A78K-01 16 19475233 19475233 A T TMC5 Nonsense_Mutation p.K458* 0.22 TCGA-UY-A78K-01 16 19680552 19680552 G A C16orf62 Silent p.K853K 0.09 TCGA-UY-A78K-01 16 20432677 20432677 G C ACSM5 Missense_Mutation p.E241Q 0.23 tolerated(0.32) benign(0.172) TCGA-UY-A78K-01 16 21272573 21272573 A T CRYM Splice_Site p.X294_splice 0.19 TCGA-UY-A78K-01 16 2161007 2161007 T C PKD1 Silent p.P1387P 0.09 TCGA-UY-A78K-01 16 2201726 2201726 C T RAB26 Missense_Mutation p.R127C 0.07 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 16 23646766 23646766 T G PALB2 Missense_Mutation p.E367D 0.10 deleterious(0.03) possibly_damaging(0.757) TCGA-UY-A78K-01 16 27353559 27353559 A G IL4R Missense_Mutation p.Q63R 0.08 tolerated(0.73) benign(0.202) TCGA-UY-A78K-01 16 27692754 27692754 G A KIAA0556 Silent p.R281R 0.12 TCGA-UY-A78K-01 16 30004688 30004688 C T HIRIP3 Missense_Mutation p.R504Q 0.14 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 16 30018534 30018534 T C DOC2A Missense_Mutation p.Q205R 0.08 tolerated(0.28) benign(0.041) TCGA-UY-A78K-01 16 30505565 30505565 A G ITGAL Missense_Mutation p.K416E 0.08 tolerated(0.89) benign(0.002) TCGA-UY-A78K-01 16 30567284 30567284 T C ZNF764 Missense_Mutation p.K153R 0.12 tolerated(0.36) benign(0.006) TCGA-UY-A78K-01 16 33020682 33020682 G T IGHV3OR16-8 Missense_Mutation p.L30F 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-UY-A78K-01 16 333263 333263 G C PDIA2 Missense_Mutation p.E32Q 0.08 tolerated(0.1) probably_damaging(0.979) TCGA-UY-A78K-01 16 4511737 4511737 C A NMRAL1 3'UTR 0.10 TCGA-UY-A78K-01 16 46642213 46642213 T C SHCBP1 Missense_Mutation p.R229G 0.17 deleterious(0) possibly_damaging(0.447) TCGA-UY-A78K-01 16 4920909 4920911 GAA - UBN1 In_Frame_Del p.E500del 0.10 TCGA-UY-A78K-01 16 4935829 4935829 C T PPL Missense_Mutation p.D943N 0.10 deleterious(0.03) probably_damaging(0.968) TCGA-UY-A78K-01 16 50354577 50354577 C A BRD7 Nonsense_Mutation p.E538* 0.08 TCGA-UY-A78K-01 16 55732412 55732412 C A SLC6A2 Missense_Mutation p.T474N 0.13 tolerated(0.44) possibly_damaging(0.491) TCGA-UY-A78K-01 16 55732416 55732416 T G SLC6A2 Missense_Mutation p.F475L 0.11 deleterious(0.01) possibly_damaging(0.731) TCGA-UY-A78K-01 16 57394419 57394419 C A CCL22 Silent p.R48R 0.38 TCGA-UY-A78K-01 16 57758646 57758646 C G CCDC135 Missense_Mutation p.Q553E 0.10 tolerated(1) benign(0.005) TCGA-UY-A78K-01 16 57954290 57954290 C A CNGB1 Splice_Site p.X601_splice 0.06 TCGA-UY-A78K-01 16 597766 597766 G A CAPN15 Missense_Mutation p.V310I 0.18 tolerated_low_confidence(0.15) benign(0.018) TCGA-UY-A78K-01 16 66424329 66424329 G A CDH5 Missense_Mutation p.E269K 0.10 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 16 66997179 66997179 T C CES3 Silent p.F60F 0.09 TCGA-UY-A78K-01 16 67942746 67942746 A - PSKH1 Frame_Shift_Del p.S32Vfs*52 0.09 TCGA-UY-A78K-01 16 67980927 67980927 G C SLC12A4 Silent p.L720L 0.15 TCGA-UY-A78K-01 16 70731130 70731130 G T VAC14 Missense_Mutation p.R623S 0.13 deleterious(0.04) possibly_damaging(0.594) TCGA-UY-A78K-01 16 72058043 72058043 G C DHODH Splice_Site p.X378_splice 0.14 TCGA-UY-A78K-01 16 76513315 76513315 G T CNTNAP4 Splice_Site p.X515_splice 0.18 TCGA-UY-A78K-01 16 84693388 84693388 G T KLHL36 Missense_Mutation p.R387L 0.08 deleterious(0.01) benign(0.333) TCGA-UY-A78K-01 16 88951468 88951468 C T CBFA2T3 Missense_Mutation p.R368H 0.28 deleterious(0.03) benign(0.028) TCGA-UY-A78K-01 16 8988666 8988666 T C USP7 Missense_Mutation p.D1029G 0.11 tolerated(0.35) benign(0.001) TCGA-UY-A78K-01 17 10293859 10293859 G A MYH8 Missense_Mutation p.A1909V 0.09 tolerated(0.06) probably_damaging(0.971) TCGA-UY-A78K-01 17 10293860 10293860 C G MYH8 Missense_Mutation p.A1909P 0.09 deleterious(0) probably_damaging(0.986) TCGA-UY-A78K-01 17 15215636 15215636 G A TEKT3 Silent p.F347F 0.13 TCGA-UY-A78K-01 17 18022999 18022999 C T MYO15A Silent p.Y295Y 0.14 TCGA-UY-A78K-01 17 2226711 2226711 A - TSR1 3'UTR 0.33 TCGA-UY-A78K-01 17 2867342 2867342 C T RAP1GAP2 Missense_Mutation p.R158W 0.08 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 17 29220717 29220721 AAAGG - ATAD5 Frame_Shift_Del p.G1617Qfs*13 0.12 TCGA-UY-A78K-01 17 29527520 29527520 C T NF1 Silent p.A323A 0.10 TCGA-UY-A78K-01 17 31350886 31350886 A G ASIC2 Missense_Mutation p.Y448H 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78K-01 17 32954055 32954055 G - TMEM132E Frame_Shift_Del p.S236Tfs*9 0.16 TCGA-UY-A78K-01 17 33454283 33454283 G A FNDC8 Silent p.S144S 0.09 TCGA-UY-A78K-01 17 36863216 36863216 C T MLLT6 Silent p.I41I 0.34 TCGA-UY-A78K-01 17 36863262 36863262 C G MLLT6 Missense_Mutation p.Q57E 0.34 deleterious(0) unknown(0) TCGA-UY-A78K-01 17 37223975 37223975 C G PLXDC1 3'UTR 0.41 TCGA-UY-A78K-01 17 37822440 37822440 T A TCAP 3'UTR 0.10 TCGA-UY-A78K-01 17 3854911 3854911 C T ATP2A3 Silent p.L96L 0.17 TCGA-UY-A78K-01 17 39635096 39635096 A G KRT35 Missense_Mutation p.L288S 0.07 deleterious(0) benign(0.028) TCGA-UY-A78K-01 17 40263805 40263805 A G DHX58 Missense_Mutation p.Y36H 0.10 tolerated(0.05) possibly_damaging(0.562) TCGA-UY-A78K-01 17 40312100 40312100 G A KCNH4 Silent p.L1004L 0.10 TCGA-UY-A78K-01 17 43175920 43175920 G A NMT1 Missense_Mutation p.R295K 0.11 deleterious(0.03) benign(0.089) TCGA-UY-A78K-01 17 43474372 43474372 C G ARHGAP27 Missense_Mutation p.E280Q 0.18 tolerated(0.07) possibly_damaging(0.71) TCGA-UY-A78K-01 17 5039969 5039969 G C USP6 Silent p.G233G 0.09 TCGA-UY-A78K-01 17 5085036 5085036 T G ZNF594 3'UTR 0.11 TCGA-UY-A78K-01 17 5085430 5085430 A T ZNF594 Missense_Mutation p.Y708N 0.09 deleterious(0) benign(0.034) TCGA-UY-A78K-01 17 60654067 60654067 C T TLK2 Intron 0.10 TCGA-UY-A78K-01 17 61432552 61432552 G C TANC2 Missense_Mutation p.E721Q 0.10 tolerated(0.25) benign(0.168) TCGA-UY-A78K-01 17 62796590 62796590 C T PLEKHM1P RNA 0.06 TCGA-UY-A78K-01 17 65942143 65942143 A T BPTF Missense_Mutation p.Q2440L 0.07 benign(0.392) TCGA-UY-A78K-01 17 66426273 66426273 C A WIPI1 Missense_Mutation p.G277C 0.08 deleterious(0) possibly_damaging(0.627) TCGA-UY-A78K-01 17 66928619 66928619 A G ABCA8 Missense_Mutation p.S203P 0.06 deleterious(0) probably_damaging(0.984) TCGA-UY-A78K-01 17 7226066 7226066 G C NEURL4 Missense_Mutation p.L905V 0.14 tolerated(0.46) benign(0.022) TCGA-UY-A78K-01 17 7230070 7230070 A G NEURL4 Missense_Mutation p.V351A 0.15 deleterious(0) probably_damaging(0.997) TCGA-UY-A78K-01 17 72363846 72363846 C A GPR142 Missense_Mutation p.L68I 0.13 deleterious_low_confidence(0.02) benign(0.05) TCGA-UY-A78K-01 17 7296112 7296112 C A TMEM256-PLSCR3 Nonsense_Mutation p.E223* 0.11 TCGA-UY-A78K-01 17 73831933 73831933 C T UNC13D Intron 0.11 TCGA-UY-A78K-01 17 73997436 73997436 G A CDK3 5'UTR 0.21 TCGA-UY-A78K-01 17 7402793 7402793 G A POLR2A Missense_Mutation p.D552N 0.43 probably_damaging(0.979) TCGA-UY-A78K-01 17 74080219 74080219 C T EXOC7 Missense_Mutation p.G658D 0.19 deleterious(0) probably_damaging(0.985) TCGA-UY-A78K-01 17 74387189 74387189 T C UBE2O Silent p.R1238R 0.10 TCGA-UY-A78K-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.48 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 17 76129569 76129569 A T TMC8 Missense_Mutation p.Y205F 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A78K-01 17 76498835 76498835 A G DNAH17-AS1 3'UTR 0.26 TCGA-UY-A78K-01 17 78073541 78073541 C T CCDC40 Silent p.I1132I 0.15 TCGA-UY-A78K-01 17 78280110 78280110 C G RNF213 Missense_Mutation p.L757V 0.10 probably_damaging(0.996) TCGA-UY-A78K-01 17 78326608 78326608 C T RNF213 Intron 0.12 TCGA-UY-A78K-01 17 78327415 78327416 AG - RNF213 Frame_Shift_Del p.E3510Kfs*3 0.16 TCGA-UY-A78K-01 17 7842836 7842836 G C CNTROB Missense_Mutation p.E311D 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-UY-A78K-01 17 80159758 80159758 C A CCDC57 Missense_Mutation p.W21C 0.11 deleterious(0) probably_damaging(0.986) TCGA-UY-A78K-01 17 80789164 80789164 C A ZNF750 Missense_Mutation p.K389N 0.05 tolerated(0.05) possibly_damaging(0.73) TCGA-UY-A78K-01 17 8170425 8170425 T C PFAS Missense_Mutation p.F1016S 0.23 deleterious(0.01) probably_damaging(0.924) TCGA-UY-A78K-01 18 14105972 14105972 T C ZNF519 Silent p.V189V 0.06 TCGA-UY-A78K-01 18 19429163 19429163 A G MIB1 Silent p.Q800Q 0.16 TCGA-UY-A78K-01 18 19997538 19997538 C G CTAGE1 Missense_Mutation p.E79D 0.10 deleterious(0.02) benign(0.162) TCGA-UY-A78K-01 18 21128074 21128074 T C NPC1 Splice_Site p.X552_splice 0.07 TCGA-UY-A78K-01 18 21416982 21416982 C A LAMA3 Missense_Mutation p.R1008S 0.10 possibly_damaging(0.828) TCGA-UY-A78K-01 18 24445712 24445712 G T AQP4 5'UTR 0.23 TCGA-UY-A78K-01 18 3168909 3168909 A G MYOM1 Silent p.F415F 0.11 TCGA-UY-A78K-01 18 33795908 33795908 C G MOCOS Missense_Mutation p.L589V 0.11 tolerated(0.13) possibly_damaging(0.841) TCGA-UY-A78K-01 18 54629687 54629687 G T WDR7 Missense_Mutation p.R1364L 0.18 tolerated(0.16) probably_damaging(0.994) TCGA-UY-A78K-01 18 56247695 56247695 C T ALPK2 Missense_Mutation p.E105K 0.08 tolerated(0.15) benign(0.02) TCGA-UY-A78K-01 18 56585778 56585778 A T ZNF532 Missense_Mutation p.N87Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-UY-A78K-01 18 56586388 56586388 C G ZNF532 Missense_Mutation p.P290R 0.17 tolerated(0.14) benign(0.013) TCGA-UY-A78K-01 18 61304868 61304868 A G SERPINB4 3'UTR 0.11 TCGA-UY-A78K-01 18 67991788 67991788 C T SOCS6 5'UTR 0.08 TCGA-UY-A78K-01 18 6961969 6961969 C A LAMA1 Missense_Mutation p.G2476V 0.07 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 18 6999989 6999989 G T LAMA1 Missense_Mutation p.P1464T 0.10 deleterious(0) possibly_damaging(0.904) TCGA-UY-A78K-01 18 72178174 72178174 G A CNDP2 Missense_Mutation p.D195N 0.31 deleterious(0) probably_damaging(0.988) TCGA-UY-A78K-01 18 76754424 76754424 G A SALL3 Silent p.L811L 0.08 TCGA-UY-A78K-01 18 8718434 8718434 G A SOGA2 5'UTR 0.09 TCGA-UY-A78K-01 18 9254937 9254937 C G ANKRD12 Missense_Mutation p.L558V 0.11 deleterious_low_confidence(0) benign(0.033) TCGA-UY-A78K-01 19 11227636 11227636 A T LDLR Nonsense_Mutation p.K603* 0.06 TCGA-UY-A78K-01 19 12975887 12975887 C T MAST1 Silent p.I511I 0.24 TCGA-UY-A78K-01 19 14024301 14024301 G A CC2D1A Missense_Mutation p.G200S 0.06 tolerated(0.96) benign(0.008) TCGA-UY-A78K-01 19 16910728 16910728 T C NWD1 Missense_Mutation p.L1164P 0.07 deleterious(0) probably_damaging(0.921) TCGA-UY-A78K-01 19 18895151 18895151 G T COMP Missense_Mutation p.P646H 0.08 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 19 19625591 19625591 C G TSSK6 Missense_Mutation p.D216H 0.11 tolerated(0.36) benign(0.001) TCGA-UY-A78K-01 19 20044159 20044159 G T ZNF93 Missense_Mutation p.G132V 0.06 tolerated(0.09) possibly_damaging(0.477) TCGA-UY-A78K-01 19 2109090 2109090 A G AP3D1 Missense_Mutation p.F1156S 0.09 deleterious(0) benign(0.009) TCGA-UY-A78K-01 19 22155282 22155282 T C ZNF208 Missense_Mutation p.K852E 0.27 tolerated(0.13) unknown(0) TCGA-UY-A78K-01 19 23578210 23578210 T A ZNF91 5'UTR 0.20 TCGA-UY-A78K-01 19 2434501 2434501 C A LMNB2 Nonsense_Mutation p.E332* 0.24 TCGA-UY-A78K-01 19 2834686 2834686 A C ZNF554 Missense_Mutation p.T485P 0.08 deleterious(0) probably_damaging(0.989) TCGA-UY-A78K-01 19 3014596 3014597 TT - TLE2 Frame_Shift_Del p.K232Efs*2 0.30 TCGA-UY-A78K-01 19 3151779 3151779 T C GNA15 Missense_Mutation p.M187T 0.07 deleterious(0.01) possibly_damaging(0.504) TCGA-UY-A78K-01 19 36046679 36046679 G A ATP4A Silent p.A635A 0.43 TCGA-UY-A78K-01 19 36051751 36051751 G A ATP4A Silent p.I168I 0.09 TCGA-UY-A78K-01 19 36302919 36302919 C G PRODH2 Missense_Mutation p.G257A 0.14 tolerated(0.21) benign(0.009) TCGA-UY-A78K-01 19 36884397 36884397 T C ZFP82 Missense_Mutation p.Y282C 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-UY-A78K-01 19 37038677 37038677 C A ZNF529 Missense_Mutation p.R261S 0.05 deleterious(0) benign(0.23) TCGA-UY-A78K-01 19 38160001 38160001 G A ZNF781 3'UTR 0.09 TCGA-UY-A78K-01 19 38905588 38905588 G A RASGRP4 Missense_Mutation p.P377L 0.15 tolerated(0.55) benign(0.012) TCGA-UY-A78K-01 19 39329038 39329038 T G HNRNPL Missense_Mutation p.E519A 0.13 deleterious(0.02) benign(0.046) TCGA-UY-A78K-01 19 39329039 39329039 C A HNRNPL Nonsense_Mutation p.E519* 0.12 TCGA-UY-A78K-01 19 39435729 39435729 C A CTC-360G5.8 Missense_Mutation p.E96D 0.54 tolerated_low_confidence(0.16) benign(0.033) TCGA-UY-A78K-01 19 40222062 40222062 A T CLC Missense_Mutation p.D129E 0.08 tolerated(0.05) possibly_damaging(0.776) TCGA-UY-A78K-01 19 40901180 40901180 C T PRX Missense_Mutation p.G1027R 0.18 deleterious(0) probably_damaging(0.979) TCGA-UY-A78K-01 19 41105337 41105337 G T LTBP4 Missense_Mutation p.R72S 0.10 tolerated_low_confidence(0.06) benign(0) TCGA-UY-A78K-01 19 41351937 41351937 G A CYP2A6 Silent p.F299F 0.16 TCGA-UY-A78K-01 19 42082648 42082648 C T CEACAM21 Missense_Mutation p.P8S 0.09 tolerated(0.2) benign(0.326) TCGA-UY-A78K-01 19 42482219 42482219 G A ATP1A3 Silent p.I617I 0.08 TCGA-UY-A78K-01 19 4292451 4292451 C G TMIGD2 3'UTR 0.12 TCGA-UY-A78K-01 19 4292651 4292651 G C TMIGD2 Missense_Mutation p.P265R 0.09 deleterious(0.01) benign(0.29) TCGA-UY-A78K-01 19 43433809 43433809 A G PSG7 Missense_Mutation p.V165A 0.11 deleterious(0) possibly_damaging(0.889) TCGA-UY-A78K-01 19 4345878 4345878 G C MPND Missense_Mutation p.G144A 0.09 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 19 43922100 43922100 T C TEX101 Silent p.S172S 0.11 TCGA-UY-A78K-01 19 44419122 44419122 T A ZNF45 Nonsense_Mutation p.R156* 0.21 TCGA-UY-A78K-01 19 46522837 46522837 C A PGLYRP1 Missense_Mutation p.G119V 0.12 deleterious(0.03) probably_damaging(0.97) TCGA-UY-A78K-01 19 48967783 48967783 G A KCNJ14 Missense_Mutation p.E354K 0.31 deleterious(0) possibly_damaging(0.845) TCGA-UY-A78K-01 19 49001278 49001278 C G LMTK3 Missense_Mutation p.E1045D 0.11 unknown(0) TCGA-UY-A78K-01 19 49357480 49357480 C T PLEKHA4 Silent p.E363E 0.11 TCGA-UY-A78K-01 19 4950977 4950977 A G UHRF1 RNA 0.09 TCGA-UY-A78K-01 19 49658161 49658161 T C HRC Missense_Mutation p.K112E 0.09 tolerated(1) benign(0.001) TCGA-UY-A78K-01 19 50193082 50193082 C A ADM5 5'UTR 0.11 TCGA-UY-A78K-01 19 50247521 50247521 C A TSKS Missense_Mutation p.R443L 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-UY-A78K-01 19 50370433 50370433 A G PNKP Missense_Mutation p.L10S 0.17 deleterious(0) probably_damaging(0.984) TCGA-UY-A78K-01 19 50826707 50826707 C A KCNC3 Missense_Mutation p.M501I 0.08 deleterious(0.02) probably_damaging(0.989) TCGA-UY-A78K-01 19 51377990 51377990 C G KLK2 Silent p.L20L 0.08 TCGA-UY-A78K-01 19 51503726 51503726 G - KLK8 Frame_Shift_Del p.V108* 0.10 TCGA-UY-A78K-01 19 52272243 52272243 G T FPR2 Missense_Mutation p.G111V 0.39 tolerated(0.14) benign(0.344) TCGA-UY-A78K-01 19 52497701 52497701 C G ZNF615 Missense_Mutation p.G221R 0.11 tolerated(0.1) benign(0.056) TCGA-UY-A78K-01 19 52529084 52529084 C G ZNF614 5'UTR 0.10 TCGA-UY-A78K-01 19 52941594 52941594 G C ZNF534 Missense_Mutation p.G307A 0.11 deleterious(0.03) probably_damaging(0.974) TCGA-UY-A78K-01 19 53303993 53303993 T A ZNF28 Missense_Mutation p.T369S 0.08 tolerated(1) benign(0.038) TCGA-UY-A78K-01 19 55994258 55994258 C G ZNF628 Missense_Mutation p.H566Q 0.15 deleterious(0.03) possibly_damaging(0.824) TCGA-UY-A78K-01 19 56413511 56413511 C T NLRP13 Silent p.Q893Q 0.07 TCGA-UY-A78K-01 19 56424293 56424293 T C NLRP13 Missense_Mutation p.E297G 0.09 deleterious(0) probably_damaging(0.966) TCGA-UY-A78K-01 19 56466177 56466177 G A NLRP8 Silent p.T251T 0.08 TCGA-UY-A78K-01 19 56925716 56925716 G A ZNF583 Missense_Mutation p.V47I 0.11 tolerated(0.07) benign(0) TCGA-UY-A78K-01 19 57868061 57868061 G A ZNF304 Missense_Mutation p.G275E 0.05 tolerated(0.05) probably_damaging(0.969) TCGA-UY-A78K-01 19 58324717 58324717 C G ZNF552 Missense_Mutation p.Q35H 0.21 deleterious(0) possibly_damaging(0.831) TCGA-UY-A78K-01 19 5894689 5894689 A G NDUFA11 Intron 0.31 TCGA-UY-A78K-01 19 6693443 6693443 C G C3 Silent p.V1070V 0.11 TCGA-UY-A78K-01 19 6843175 6843175 C T VAV1 Silent p.L670L 0.12 TCGA-UY-A78K-01 19 6926466 6926466 G C EMR1 Missense_Mutation p.L692F 0.29 deleterious(0.02) probably_damaging(1) TCGA-UY-A78K-01 19 8564325 8564325 C T PRAM1 Missense_Mutation p.E123K 0.10 deleterious(0) possibly_damaging(0.853) TCGA-UY-A78K-01 19 8615562 8615562 A T MYO1F Missense_Mutation p.I263N 0.08 deleterious(0) possibly_damaging(0.691) TCGA-UY-A78K-01 19 9075666 9075666 C T MUC16 Missense_Mutation p.S3927N 0.14 unknown(0) TCGA-UY-A78K-01 19 9082833 9082833 A G MUC16 Silent p.Y2994Y 0.09 TCGA-UY-A78K-01 19 9236949 9236949 C T OR7G3 Missense_Mutation p.M226I 0.06 deleterious(0.01) benign(0.001) TCGA-UY-A78K-01 19 9324715 9324715 A G OR7D4 Missense_Mutation p.S267P 0.12 tolerated(0.05) benign(0.186) TCGA-UY-A78K-01 19 9413095 9413095 C T ZNF699 Missense_Mutation p.R45K 0.05 tolerated(0.2) possibly_damaging(0.891) TCGA-UY-A78K-01 19 9577799 9577799 G C ZNF560 Silent p.A608A 0.05 TCGA-UY-A78K-01 19 9801026 9801026 C T ZNF812 Missense_Mutation p.E385K 0.15 deleterious(0) benign(0.003) TCGA-UY-A78K-01 1 101196955 101196955 C A VCAM1 Missense_Mutation p.T469N 0.08 deleterious(0.01) probably_damaging(0.94) TCGA-UY-A78K-01 1 101200296 101200296 A G VCAM1 Silent p.Q677Q 0.08 TCGA-UY-A78K-01 1 104118137 104118137 G A AMY2B Nonsense_Mutation p.W359* 0.09 TCGA-UY-A78K-01 1 110018260 110018260 A T SYPL2 Missense_Mutation p.M63L 0.15 tolerated(0.06) benign(0.001) TCGA-UY-A78K-01 1 110882692 110882693 - C RBM15 Frame_Shift_Ins p.R223Pfs*20 0.09 TCGA-UY-A78K-01 1 110950266 110950266 C G LAMTOR5 Missense_Mutation p.E75Q 0.11 tolerated_low_confidence(0.53) benign(0.012) TCGA-UY-A78K-01 1 111825096 111825096 C G CHIAP2 Intron 0.20 TCGA-UY-A78K-01 1 111857957 111857957 T A CHIA Missense_Mutation p.L127Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-UY-A78K-01 1 111957606 111957606 T C OVGP1 Missense_Mutation p.Q506R 0.06 tolerated_low_confidence(0.41) benign(0) TCGA-UY-A78K-01 1 114184842 114184842 C T MAGI3 Missense_Mutation p.S557L 0.05 tolerated(0.41) benign(0.126) TCGA-UY-A78K-01 1 11884608 11884608 C G CLCN6 Missense_Mutation p.Q216E 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-UY-A78K-01 1 120307134 120307134 C G HMGCS2 Missense_Mutation p.E74Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 1 12082181 12082181 C T MIIP Silent p.N48N 0.11 TCGA-UY-A78K-01 1 12336620 12336620 A G VPS13D Missense_Mutation p.Y992C 0.15 probably_damaging(0.974) TCGA-UY-A78K-01 1 12785919 12785919 A T AADACL3 Missense_Mutation p.M337L 0.14 tolerated(0.8) benign(0) TCGA-UY-A78K-01 1 13001303 13001303 T C PRAMEF6 Missense_Mutation p.N127S 0.06 tolerated(0.94) benign(0.108) TCGA-UY-A78K-01 1 1309676 1309676 T A AURKAIP1 Nonsense_Mutation p.K68* 0.12 TCGA-UY-A78K-01 1 145365317 145365317 G C NBPF10 Silent p.G3314G 0.21 TCGA-UY-A78K-01 1 149915749 149915749 C A OTUD7B 3'UTR 0.07 TCGA-UY-A78K-01 1 150921906 150921906 A C SETDB1 Silent p.R495R 0.34 TCGA-UY-A78K-01 1 150933286 150933286 C T SETDB1 Silent p.F916F 0.07 TCGA-UY-A78K-01 1 151337469 151337469 T C SELENBP1 Missense_Mutation p.K397E 0.21 tolerated(0.07) possibly_damaging(0.474) TCGA-UY-A78K-01 1 152083727 152083727 C T TCHH Missense_Mutation p.E656K 0.60 unknown(0) TCGA-UY-A78K-01 1 152084999 152084999 C T TCHH Missense_Mutation p.E232K 0.05 unknown(0) TCGA-UY-A78K-01 1 152648909 152648909 C T LCE2C 3'UTR 0.19 TCGA-UY-A78K-01 1 153906077 153906077 G T DENND4B Missense_Mutation p.S1071Y 0.38 deleterious(0.05) benign(0.305) TCGA-UY-A78K-01 1 156035796 156035796 G A RAB25 Silent p.G46G 0.11 TCGA-UY-A78K-01 1 158670125 158670125 G T OR6K2 Silent p.T106T 0.20 TCGA-UY-A78K-01 1 159921567 159921567 T C SLAMF9 Missense_Mutation p.M252V 0.23 tolerated(1) benign(0) TCGA-UY-A78K-01 1 160648744 160648744 T C CD48 3'UTR 0.20 TCGA-UY-A78K-01 1 161088993 161088993 G T NIT1 Silent p.S56S 0.09 TCGA-UY-A78K-01 1 161197728 161197728 G A TOMM40L Missense_Mutation p.D145N 0.10 tolerated(0.12) probably_damaging(0.999) TCGA-UY-A78K-01 1 165173199 165173199 G C LMX1A Nonsense_Mutation p.S356* 0.25 TCGA-UY-A78K-01 1 165875181 165875181 C T UCK2 Silent p.I207I 0.18 TCGA-UY-A78K-01 1 171178150 171178150 A T FMO2 3'UTR 0.26 TCGA-UY-A78K-01 1 171605130 171605130 T C MYOC Missense_Mutation p.K484E 0.10 deleterious(0) possibly_damaging(0.595) TCGA-UY-A78K-01 1 17318585 17318585 G A ATP13A2 Missense_Mutation p.A682V 0.10 tolerated(0.09) benign(0.41) TCGA-UY-A78K-01 1 179820268 179820268 C T TOR1AIP2 Missense_Mutation p.E89K 0.46 tolerated_low_confidence(0.17) benign(0.137) TCGA-UY-A78K-01 1 18152290 18152290 C T ACTL8 Missense_Mutation p.S126L 0.20 deleterious(0) possibly_damaging(0.68) TCGA-UY-A78K-01 1 18152477 18152477 C T ACTL8 Silent p.L188L 0.12 TCGA-UY-A78K-01 1 186281649 186281649 T A TPR 3'UTR 0.30 TCGA-UY-A78K-01 1 18691763 18691763 C G IGSF21 Nonsense_Mutation p.S196* 0.09 TCGA-UY-A78K-01 1 19186156 19186156 G A TAS1R2 5'UTR 0.10 TCGA-UY-A78K-01 1 193149598 193149598 A C B3GALT2 Missense_Mutation p.N365K 0.24 deleterious(0) probably_damaging(0.973) TCGA-UY-A78K-01 1 196395069 196395069 C A KCNT2 Missense_Mutation p.R345L 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-UY-A78K-01 1 196977769 196977769 G A CFHR5 Missense_Mutation p.A556T 0.07 tolerated(0.52) benign(0.01) TCGA-UY-A78K-01 1 201965291 201965291 G A RNPEP Missense_Mutation p.E252K 0.08 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 1 206611380 206611380 T G SRGAP2 Missense_Mutation p.L481R 0.11 deleterious(0) probably_damaging(0.986) TCGA-UY-A78K-01 1 21050734 21050734 G - SH2D5 Frame_Shift_Del p.P214Qfs*31 0.08 TCGA-UY-A78K-01 1 214815489 214815489 G A CENPF Missense_Mutation p.E1270K 0.06 benign(0.385) TCGA-UY-A78K-01 1 222802891 222802891 G A MIA3 Missense_Mutation p.E777K 0.26 tolerated(0.15) benign(0.006) TCGA-UY-A78K-01 1 223971942 223971942 C A TP53BP2 Missense_Mutation p.D1080Y 0.08 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 1 228645308 228645308 C T HIST3H2A Missense_Mutation p.A71T 0.06 deleterious_low_confidence(0.02) benign(0.403) TCGA-UY-A78K-01 1 22902951 22902951 G C EPHA8 Missense_Mutation p.G134A 0.09 tolerated(0.48) probably_damaging(1) TCGA-UY-A78K-01 1 233190142 233190142 C A PCNXL2 Missense_Mutation p.G1408V 0.41 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 1 233190143 233190143 C A PCNXL2 Nonsense_Mutation p.G1408* 0.40 TCGA-UY-A78K-01 1 233394333 233394333 C T PCNXL2 Silent p.Q425Q 0.06 TCGA-UY-A78K-01 1 236718869 236718869 G C HEATR1 Missense_Mutation p.F1912L 0.11 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 1 2447127 2447127 C T PANK4 Silent p.E416E 0.17 TCGA-UY-A78K-01 1 2452165 2452165 C T PANK4 Silent p.V201V 0.08 TCGA-UY-A78K-01 1 247752306 247752306 A T OR2G2 Silent p.S215S 0.34 TCGA-UY-A78K-01 1 248616623 248616623 C A OR2T2 Silent p.I175I 0.28 TCGA-UY-A78K-01 1 26386835 26386836 AC - TRIM63 Frame_Shift_Del p.C173Yfs*9 0.13 TCGA-UY-A78K-01 1 27269397 27269397 A G NUDC Silent p.K194K 0.06 TCGA-UY-A78K-01 1 31351412 31351412 G C SDC3 Intron 0.15 TCGA-UY-A78K-01 1 31819499 31819499 G A ZCCHC17 Silent p.R110R 0.09 TCGA-UY-A78K-01 1 32120952 32120952 G A COL16A1 Missense_Mutation p.S1418L 0.15 unknown(0) TCGA-UY-A78K-01 1 32221918 32221918 C A BAI2 Missense_Mutation p.A174S 0.14 tolerated(0.58) benign(0.061) TCGA-UY-A78K-01 1 35908550 35908550 C T KIAA0319L Silent p.E912E 0.32 TCGA-UY-A78K-01 1 36785972 36785972 C A SH3D21 Missense_Mutation p.P570T 0.12 tolerated(0.08) possibly_damaging(0.878) TCGA-UY-A78K-01 1 40536618 40536618 G C CAP1 Missense_Mutation p.M437I 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A78K-01 1 43622037 43622037 C T FAM183A 3'UTR 0.15 TCGA-UY-A78K-01 1 51873848 51873848 G C EPS15 Missense_Mutation p.L478V 0.12 tolerated(0.06) possibly_damaging(0.452) TCGA-UY-A78K-01 1 52704314 52704314 G A ZFYVE9 Missense_Mutation p.E409K 0.14 tolerated_low_confidence(0.06) benign(0.005) TCGA-UY-A78K-01 1 52704316 52704316 G A ZFYVE9 Silent p.E409E 0.15 TCGA-UY-A78K-01 1 52704386 52704386 G A ZFYVE9 Missense_Mutation p.G433S 0.15 tolerated_low_confidence(0.74) benign(0.001) TCGA-UY-A78K-01 1 52838800 52838800 T C ORC1 3'UTR 0.15 TCGA-UY-A78K-01 1 54426041 54426041 C G LRRC42 Silent p.L206L 0.10 TCGA-UY-A78K-01 1 54644906 54644906 C G CYB5RL Missense_Mutation p.K220N 0.10 deleterious(0.01) benign(0.403) TCGA-UY-A78K-01 1 60505820 60505820 A G C1orf87 Silent p.N172N 0.10 TCGA-UY-A78K-01 1 62672712 62672712 G A L1TD1 Missense_Mutation p.E138K 0.15 tolerated(0.31) unknown(0) TCGA-UY-A78K-01 1 65830332 65830332 G T DNAJC6 Missense_Mutation p.D70Y 0.11 deleterious(0) possibly_damaging(0.89) TCGA-UY-A78K-01 1 6585874 6585874 T C NOL9 3'UTR 0.23 TCGA-UY-A78K-01 1 66070845 66070845 A C LEPR Missense_Mutation p.T510P 0.18 deleterious(0) probably_damaging(0.99) TCGA-UY-A78K-01 1 66833733 66833733 T C PDE4B Silent p.Y549Y 0.11 TCGA-UY-A78K-01 1 67099831 67099831 G T SGIP1 Intron 0.12 TCGA-UY-A78K-01 1 67145420 67145420 T A SGIP1 Missense_Mutation p.L267I 0.33 tolerated_low_confidence(0.16) probably_damaging(0.952) TCGA-UY-A78K-01 1 67288098 67288098 T A WDR78 Silent p.G814G 0.11 TCGA-UY-A78K-01 1 67516174 67516174 T A SLC35D1 Missense_Mutation p.T136S 0.20 deleterious(0) probably_damaging(0.997) TCGA-UY-A78K-01 1 67559147 67559147 T A C1orf141 Missense_Mutation p.E248D 0.11 tolerated(0.07) possibly_damaging(0.801) TCGA-UY-A78K-01 1 75038926 75038926 T A C1orf173 Missense_Mutation p.E823V 0.13 deleterious(0.01) possibly_damaging(0.608) TCGA-UY-A78K-01 1 76347029 76347029 C A MSH4 Missense_Mutation p.A627D 0.11 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 1 8716422 8716422 T A RERE 5'UTR 0.12 TCGA-UY-A78K-01 1 95293179 95293179 A G SLC44A3 Missense_Mutation p.Q132R 0.06 tolerated(0.24) benign(0.049) TCGA-UY-A78K-01 1 9662268 9662268 T C TMEM201 Silent p.V366V 0.09 TCGA-UY-A78K-01 1 98060654 98060654 T C DPYD Missense_Mutation p.K307E 0.11 deleterious(0.01) probably_damaging(1) TCGA-UY-A78K-01 20 10030151 10030151 A T ANKEF1 Nonsense_Mutation p.K312* 0.13 TCGA-UY-A78K-01 20 10033833 10033836 TAAC - ANKEF1 Frame_Shift_Del p.N649Cfs*10 0.23 TCGA-UY-A78K-01 20 13740436 13740438 TTC - ESF1 In_Frame_Del p.E577del 0.08 TCGA-UY-A78K-01 20 16360093 16360093 T C KIF16B Missense_Mutation p.K852E 0.10 deleterious_low_confidence(0.03) benign(0.121) TCGA-UY-A78K-01 20 23065698 23065698 G A CD93 Missense_Mutation p.P378S 0.11 tolerated(0.3) benign(0.017) TCGA-UY-A78K-01 20 25481559 25481559 C T NINL Missense_Mutation p.D317N 0.13 tolerated(0.07) possibly_damaging(0.578) TCGA-UY-A78K-01 20 30432930 30432930 T C FOXS1 Missense_Mutation p.Q139R 0.09 tolerated(0.46) benign(0.001) TCGA-UY-A78K-01 20 30729416 30729416 G A TM9SF4 Missense_Mutation p.E116K 0.06 tolerated(0.75) benign(0.021) TCGA-UY-A78K-01 20 31016181 31016181 C T ASXL1 Nonsense_Mutation p.R143* 0.08 TCGA-UY-A78K-01 20 3129292 3129292 G A FASTKD5 Missense_Mutation p.S142L 0.12 deleterious(0.05) benign(0.118) TCGA-UY-A78K-01 20 32211019 32211019 C G CBFA2T2 Silent p.L212L 0.08 TCGA-UY-A78K-01 20 33587469 33587469 G C MYH7B Missense_Mutation p.E1588Q 0.21 possibly_damaging(0.72) TCGA-UY-A78K-01 20 33735010 33735010 G C EDEM2 Missense_Mutation p.Q18E 0.13 tolerated_low_confidence(1) unknown(0) TCGA-UY-A78K-01 20 34446277 34446277 C A PHF20 Missense_Mutation p.H132N 0.11 deleterious(0) probably_damaging(0.995) TCGA-UY-A78K-01 20 34807738 34807738 C G EPB41L1 Nonsense_Mutation p.S804* 0.13 TCGA-UY-A78K-01 20 37154634 37154634 A G RALGAPB Missense_Mutation p.I667V 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-UY-A78K-01 20 39795497 39795497 G C PLCG1 Missense_Mutation p.A767P 0.09 tolerated(0.2) benign(0.002) TCGA-UY-A78K-01 20 40827976 40827976 C G PTPRT Missense_Mutation p.G799R 0.10 tolerated(0.62) possibly_damaging(0.64) TCGA-UY-A78K-01 20 4162551 4162551 C T SMOX Silent p.R179R 0.14 TCGA-UY-A78K-01 20 42275769 42275769 A T IFT52 3'UTR 0.12 TCGA-UY-A78K-01 20 4228879 4228879 G A ADRA1D Silent p.D242D 0.27 TCGA-UY-A78K-01 20 44691998 44691998 C A NCOA5 Splice_Site p.X384_splice 0.16 TCGA-UY-A78K-01 20 48524789 48524789 G C SPATA2 Missense_Mutation p.S80C 0.04 tolerated(0.08) benign(0.009) TCGA-UY-A78K-01 20 49509924 49509924 T G ADNP Missense_Mutation p.T443P 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78K-01 20 49575926 49575926 G A MOCS3 Missense_Mutation p.V183M 0.06 deleterious(0) probably_damaging(0.922) TCGA-UY-A78K-01 20 55206340 55206340 C T TFAP2C Missense_Mutation p.A43V 0.06 tolerated(0.05) benign(0.002) TCGA-UY-A78K-01 20 56179613 56179613 C G ZBP1 3'UTR 0.06 TCGA-UY-A78K-01 20 56227396 56227396 C A PMEPA1 Missense_Mutation p.D193Y 0.10 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 20 57605476 57605476 C T ATP5E Missense_Mutation p.R14Q 0.08 tolerated(0.58) benign(0.057) TCGA-UY-A78K-01 20 61513152 61513152 C T DIDO1 Missense_Mutation p.D1386N 0.08 probably_damaging(0.998) TCGA-UY-A78K-01 20 62320485 62320485 G T RTEL1 Missense_Mutation p.K650N 0.07 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 20 62365031 62365031 A G ZGPAT Missense_Mutation p.T271A 0.04 tolerated(0.74) benign(0.002) TCGA-UY-A78K-01 20 62839182 62839182 A G MYT1 Silent p.E211E 0.11 TCGA-UY-A78K-01 20 62904831 62904831 G A PCMTD2 Missense_Mutation p.E322K 0.06 tolerated_low_confidence(0.15) benign(0.075) TCGA-UY-A78K-01 21 11098817 11098817 C A BAGE2 RNA 0.22 TCGA-UY-A78K-01 21 11098818 11098818 C A BAGE2 RNA 0.22 TCGA-UY-A78K-01 21 22804442 22804442 C T NCAM2 Missense_Mutation p.P499S 0.10 deleterious(0) probably_damaging(0.968) TCGA-UY-A78K-01 21 27269975 27269975 C T APP Silent p.L658L 0.10 TCGA-UY-A78K-01 21 32513433 32513433 C G TIAM1 Intron 0.10 TCGA-UY-A78K-01 21 35239540 35239540 T C ITSN1 Silent p.L1360L 0.12 TCGA-UY-A78K-01 21 37623526 37623526 G T DOPEY2 Missense_Mutation p.A1689S 0.06 deleterious(0.02) benign(0.125) TCGA-UY-A78K-01 21 37833564 37833564 C A CLDN14 Missense_Mutation p.V144L 0.13 tolerated(0.85) possibly_damaging(0.677) TCGA-UY-A78K-01 21 38390385 38390385 A T RIPPLY3 Nonsense_Mutation p.K151* 0.13 TCGA-UY-A78K-01 21 39087102 39087102 C A KCNJ6 Missense_Mutation p.D120Y 0.09 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 21 45107778 45107778 A G RRP1B Missense_Mutation p.Q508R 0.13 tolerated(0.49) benign(0.003) TCGA-UY-A78K-01 21 45945581 45945581 C A TSPEAR Nonsense_Mutation p.E431* 0.08 TCGA-UY-A78K-01 22 17072638 17072638 G C CCT8L2 Missense_Mutation p.A268G 0.07 tolerated(0.34) benign(0.024) TCGA-UY-A78K-01 22 17472831 17472831 C G GAB4 Missense_Mutation p.R137T 0.07 deleterious(0) possibly_damaging(0.727) TCGA-UY-A78K-01 22 17690410 17690410 T A CECR1 Missense_Mutation p.N53I 0.12 tolerated(0.11) benign(0.225) TCGA-UY-A78K-01 22 18918551 18918551 C T PRODH Missense_Mutation p.G145E 0.11 deleterious(0.01) possibly_damaging(0.662) TCGA-UY-A78K-01 22 20723763 20723763 G A USP41 Nonsense_Mutation p.R195* 0.06 TCGA-UY-A78K-01 22 20780168 20780168 G T SCARF2 Silent p.R704R 0.14 TCGA-UY-A78K-01 22 23077545 23077545 T C IGLV2-18 Missense_Mutation p.Y108H 0.13 tolerated_low_confidence(0.07) benign(0.11) TCGA-UY-A78K-01 22 24038812 24038812 T C RGL4 Silent p.F366F 0.12 TCGA-UY-A78K-01 22 27019250 27019250 C T CRYBA4 Missense_Mutation p.A31V 0.37 tolerated(0.08) benign(0.003) TCGA-UY-A78K-01 22 29746080 29746081 AT - AP1B1 Frame_Shift_Del p.Y405Cfs*21 0.12 TCGA-UY-A78K-01 22 32924889 32924889 C T SYN3 Missense_Mutation p.G401D 0.38 tolerated(0.44) unknown(0) TCGA-UY-A78K-01 22 36680254 36680254 C G MYH9 Missense_Mutation p.E1884Q 0.09 probably_damaging(0.964) TCGA-UY-A78K-01 22 37707527 37707527 G C CYTH4 Missense_Mutation p.E306Q 0.09 deleterious(0.04) probably_damaging(0.935) TCGA-UY-A78K-01 22 37707551 37707551 G C CYTH4 Missense_Mutation p.D314H 0.07 tolerated(0.08) benign(0.008) TCGA-UY-A78K-01 22 38228685 38228685 C T ANKRD54 Missense_Mutation p.D263N 0.10 tolerated(0.3) benign(0.03) TCGA-UY-A78K-01 22 39497252 39497252 A G APOBEC3H Missense_Mutation p.H54R 0.14 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 22 41256986 41256986 A T DNAJB7 3'UTR 0.21 TCGA-UY-A78K-01 22 42262940 42262940 G A SREBF2 Missense_Mutation p.G65D 0.39 tolerated(0.61) benign(0.051) TCGA-UY-A78K-01 22 42608068 42608068 G T TCF20 Missense_Mutation p.Q1082K 0.09 possibly_damaging(0.695) TCGA-UY-A78K-01 22 42610501 42610501 G C TCF20 Missense_Mutation p.Q271E 0.10 possibly_damaging(0.759) TCGA-UY-A78K-01 22 42914107 42914107 G C RRP7A Silent p.L40L 0.15 TCGA-UY-A78K-01 22 45574151 45574151 G C NUP50 Missense_Mutation p.V125L 0.09 tolerated(0.44) benign(0.002) TCGA-UY-A78K-01 2 103431276 103431276 A G TMEM182 Missense_Mutation p.Y180C 0.07 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 2 107049675 107049675 T G RGPD3 Missense_Mutation p.S758R 0.09 tolerated(0.36) benign(0.135) TCGA-UY-A78K-01 2 11280654 11280654 C T C2orf50 Silent p.F92F 0.06 TCGA-UY-A78K-01 2 112945210 112945210 C G FBLN7 3'UTR 0.20 TCGA-UY-A78K-01 2 113414772 113414772 T C SLC20A1 Silent p.L244L 0.09 TCGA-UY-A78K-01 2 11355002 11355002 G C ROCK2 Missense_Mutation p.R634G 0.07 deleterious(0.05) benign(0.106) TCGA-UY-A78K-01 2 113591113 113591113 C T IL1B Missense_Mutation p.G47S 0.07 tolerated(0.25) benign(0.376) TCGA-UY-A78K-01 2 113763613 113763613 C T IL36A Missense_Mutation p.L25F 0.09 tolerated(0.13) benign(0.32) TCGA-UY-A78K-01 2 114258157 114258157 C A FOXD4L1 3'UTR 0.11 TCGA-UY-A78K-01 2 119739073 119739073 A T MARCO Silent p.P285P 0.23 TCGA-UY-A78K-01 2 128075805 128075805 T A MAP3K2 Silent p.T378T 0.06 TCGA-UY-A78K-01 2 131519993 131519993 C A AMER3 Missense_Mutation p.S116R 0.11 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 2 131521381 131521381 C A AMER3 Missense_Mutation p.A579D 0.21 tolerated(0.18) benign(0.215) TCGA-UY-A78K-01 2 132905739 132905739 C A ANKRD30BL 3'UTR 0.24 TCGA-UY-A78K-01 2 135206424 135206424 A C MGAT5 3'UTR 0.28 TCGA-UY-A78K-01 2 136107719 136107719 C T ZRANB3 Silent p.L142L 0.11 TCGA-UY-A78K-01 2 136111058 136111058 T A ZRANB3 Silent p.P107P 0.08 TCGA-UY-A78K-01 2 141130707 141130707 C T LRP1B Splice_Site p.X3547_splice 0.29 TCGA-UY-A78K-01 2 152222733 152222733 T C TNFAIP6 Splice_Site p.X132_splice 0.08 TCGA-UY-A78K-01 2 152321490 152321490 A G RIF1 Missense_Mutation p.K1819R 0.08 tolerated_low_confidence(0.07) possibly_damaging(0.589) TCGA-UY-A78K-01 2 152374833 152374833 A G NEB Missense_Mutation p.I7600T 0.10 benign(0.422) TCGA-UY-A78K-01 2 154334832 154334832 T G RPRM Missense_Mutation p.K83T 0.20 deleterious(0) possibly_damaging(0.859) TCGA-UY-A78K-01 2 158115457 158115457 T C GALNT5 Missense_Mutation p.L288S 0.06 tolerated(0.06) benign(0.056) TCGA-UY-A78K-01 2 160710177 160710177 C G LY75-CD302 Missense_Mutation p.R876T 0.08 deleterious(0.04) probably_damaging(0.943) TCGA-UY-A78K-01 2 164467838 164467838 A G FIGN Silent p.C168C 0.06 TCGA-UY-A78K-01 2 164468309 164468309 C T FIGN Silent p.K11K 0.17 TCGA-UY-A78K-01 2 166152499 166152499 T A SCN2A Missense_Mutation p.L56M 0.09 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 2 166211047 166211047 G A SCN2A Missense_Mutation p.E1089K 0.21 deleterious(0.03) benign(0.287) TCGA-UY-A78K-01 2 166900214 166900214 C G SCN1A Missense_Mutation p.E670Q 0.12 tolerated(0.06) possibly_damaging(0.629) TCGA-UY-A78K-01 2 168099655 168099655 C G XIRP2 Missense_Mutation p.P585A 0.28 probably_damaging(0.953) TCGA-UY-A78K-01 2 168099691 168099691 G A XIRP2 Missense_Mutation p.G597S 0.30 benign(0.02) TCGA-UY-A78K-01 2 168100156 168100156 C G XIRP2 Missense_Mutation p.L752V 0.11 probably_damaging(0.999) TCGA-UY-A78K-01 2 169781193 169781193 A G ABCB11 Missense_Mutation p.S1247P 0.07 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 2 171572999 171572999 G A SP5 Silent p.L94L 0.11 TCGA-UY-A78K-01 2 172844254 172844254 G A HAT1 Missense_Mutation p.R357K 0.07 tolerated(1) benign(0.002) TCGA-UY-A78K-01 2 174085965 174085965 C G MLTK Intron 0.06 TCGA-UY-A78K-01 2 179434504 179434504 C T TTN Nonsense_Mutation p.W25452* 0.07 TCGA-UY-A78K-01 2 179441669 179441669 G A TTN Silent p.V23131V 0.07 TCGA-UY-A78K-01 2 179463972 179463972 G T TTN Missense_Mutation p.L18850I 0.09 TCGA-UY-A78K-01 2 179546386 179546386 A G TTN Splice_Site p.X11058_splice 0.08 TCGA-UY-A78K-01 2 179600440 179600440 T A TTN Silent p.V4911V 0.14 TCGA-UY-A78K-01 2 179611799 179611799 G A TTN Intron 0.19 TCGA-UY-A78K-01 2 179666962 179666962 C A TTN Silent p.T66T 0.08 TCGA-UY-A78K-01 2 182412390 182412390 G A CERKL Missense_Mutation p.P434L 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 2 182928492 182928492 G A PPP1R1C Missense_Mutation p.S79N 0.11 tolerated(0.09) probably_damaging(0.993) TCGA-UY-A78K-01 2 184023103 184023103 A T NUP35 Missense_Mutation p.E234D 0.18 tolerated(0.53) benign(0.009) TCGA-UY-A78K-01 2 190569949 190569949 G C ANKAR Missense_Mutation p.E637Q 0.25 tolerated(0.13) benign(0.097) TCGA-UY-A78K-01 2 1926559 1926559 C A MYT1L Nonsense_Mutation p.E328* 0.09 TCGA-UY-A78K-01 2 1926560 1926560 C A MYT1L Silent p.L327L 0.09 TCGA-UY-A78K-01 2 19552143 19552143 T G OSR1 Missense_Mutation p.K232Q 0.16 deleterious(0) benign(0.303) TCGA-UY-A78K-01 2 197208413 197208413 C A HECW2 Missense_Mutation p.W123L 0.09 deleterious(0) probably_damaging(0.994) TCGA-UY-A78K-01 2 201533367 201533367 A G AOX1 Silent p.G1213G 0.14 TCGA-UY-A78K-01 2 202149735 202149735 C G CASP8 Missense_Mutation p.I392M 0.10 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 2 20403894 20403894 C T SDC1 Missense_Mutation p.E103K 0.05 tolerated(0.41) benign(0.037) TCGA-UY-A78K-01 2 204736144 204736144 T G CTLA4 Silent p.L167L 0.22 TCGA-UY-A78K-01 2 21226052 21226052 A T APOB Missense_Mutation p.L4081H 0.10 possibly_damaging(0.72) TCGA-UY-A78K-01 2 212652839 212652839 C A ERBB4 Missense_Mutation p.C156F 0.18 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 2 215274959 215274959 G C SPAG16 Missense_Mutation p.A606P 0.10 deleterious(0.01) possibly_damaging(0.828) TCGA-UY-A78K-01 2 215855442 215855442 A T ABCA12 Missense_Mutation p.V1203E 0.11 tolerated(0.16) benign(0.34) TCGA-UY-A78K-01 2 216197224 216197224 C G ATIC Missense_Mutation p.P270A 0.15 deleterious(0.04) probably_damaging(0.91) TCGA-UY-A78K-01 2 216259388 216259388 G C FN1 Missense_Mutation p.S1220C 0.13 deleterious(0) possibly_damaging(0.784) TCGA-UY-A78K-01 2 218682980 218682980 G T TNS1 Missense_Mutation p.Q1255K 0.11 tolerated(0.4) benign(0.001) TCGA-UY-A78K-01 2 218700917 218700917 T C TNS1 Missense_Mutation p.K884E 0.16 tolerated(0.12) benign(0.22) TCGA-UY-A78K-01 2 219449362 219449362 A G RQCD1 Silent p.P116P 0.16 TCGA-UY-A78K-01 2 220135943 220135943 G T TUBA4B RNA 0.11 TCGA-UY-A78K-01 2 225266479 225266479 C T FAM124B Missense_Mutation p.E3K 0.12 tolerated(0.07) benign(0.055) TCGA-UY-A78K-01 2 240954260 240954260 C T NDUFA10 Missense_Mutation p.E189K 0.10 deleterious(0.02) possibly_damaging(0.595) TCGA-UY-A78K-01 2 241405565 241405565 C G GPC1 Missense_Mutation p.T512R 0.10 tolerated(0.54) possibly_damaging(0.903) TCGA-UY-A78K-01 2 241569531 241569531 G T GPR35 Missense_Mutation p.E85D 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-UY-A78K-01 2 241831177 241831177 G A C2orf54 Missense_Mutation p.S173L 0.10 deleterious(0.05) benign(0.07) TCGA-UY-A78K-01 2 25964959 25964959 A G ASXL2 Missense_Mutation p.F1416S 0.08 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 2 26101235 26101235 G A ASXL2 5'UTR 0.29 TCGA-UY-A78K-01 2 26698893 26698893 G A OTOF Silent p.F960F 0.22 TCGA-UY-A78K-01 2 27671871 27671871 C T IFT172 Missense_Mutation p.A1447T 0.14 deleterious(0.02) probably_damaging(0.945) TCGA-UY-A78K-01 2 27800754 27800754 G C C2orf16 Missense_Mutation p.E439Q 0.21 tolerated(0.14) probably_damaging(0.933) TCGA-UY-A78K-01 2 27876201 27876201 G C SUPT7L 3'UTR 0.14 TCGA-UY-A78K-01 2 33809904 33809904 T A FAM98A Missense_Mutation p.Q499L 0.18 deleterious_low_confidence(0) unknown(0) TCGA-UY-A78K-01 2 33952810 33952810 G A AC009499.1 Intron 0.32 TCGA-UY-A78K-01 2 37129860 37129860 G C STRN Missense_Mutation p.L176V 0.20 deleterious(0.02) possibly_damaging(0.679) TCGA-UY-A78K-01 2 43805724 43805724 C G THADA Missense_Mutation p.Q248H 0.08 tolerated(0.06) benign(0.049) TCGA-UY-A78K-01 2 44457537 44457537 G C PPM1B Intron 0.05 TCGA-UY-A78K-01 2 44539829 44539829 C A SLC3A1 Nonsense_Mutation p.Y479* 0.09 TCGA-UY-A78K-01 2 50280646 50280646 G A NRXN1 Silent p.L1337L 0.07 TCGA-UY-A78K-01 2 54872396 54872396 A G SPTBN1 Missense_Mutation p.K1434E 0.07 tolerated(0.23) benign(0.201) TCGA-UY-A78K-01 2 54893189 54893189 T C SPTBN1 Missense_Mutation p.L2266P 0.11 tolerated(0.23) possibly_damaging(0.555) TCGA-UY-A78K-01 2 61516008 61516008 T A USP34 Missense_Mutation p.Q1518L 0.30 tolerated(0.39) benign(0.001) TCGA-UY-A78K-01 2 69555423 69555423 G T GFPT1 Missense_Mutation p.Q625K 0.12 deleterious(0.02) benign(0.437) TCGA-UY-A78K-01 2 7023645 7023645 A G RSAD2 Missense_Mutation p.R164G 0.10 tolerated(0.07) benign(0.009) TCGA-UY-A78K-01 2 73716791 73716791 A T ALMS1 Nonsense_Mutation p.K2568* 0.06 TCGA-UY-A78K-01 2 73993610 73993610 C G DUSP11 Missense_Mutation p.Q290H 0.09 tolerated(0.06) possibly_damaging(0.537) TCGA-UY-A78K-01 2 74649500 74649500 C T WDR54 Nonsense_Mutation p.Q74* 0.18 TCGA-UY-A78K-01 2 74842217 74842217 C G M1AP Missense_Mutation p.Q100H 0.09 deleterious(0) possibly_damaging(0.506) TCGA-UY-A78K-01 2 79253870 79253870 A T REG3G Silent p.P36P 0.19 TCGA-UY-A78K-01 2 79312304 79312304 T A REG1B 3'UTR 0.14 TCGA-UY-A78K-01 2 85843586 85843586 G C USP39 Missense_Mutation p.A90P 0.08 tolerated(0.23) benign(0.002) TCGA-UY-A78K-01 2 85921593 85921593 G A GNLY Missense_Mutation p.G18S 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-UY-A78K-01 2 86386752 86386752 C G IMMT Missense_Mutation p.K313N 0.29 tolerated(0.08) possibly_damaging(0.728) TCGA-UY-A78K-01 2 86716492 86716492 A G KDM3A Missense_Mutation p.D1122G 0.12 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 2 86790447 86790447 C T CHMP3 Intron 0.17 TCGA-UY-A78K-01 2 87214106 87214106 G C RGPD1 Missense_Mutation p.D1354H 0.24 deleterious(0) probably_damaging(0.942) TCGA-UY-A78K-01 2 8967212 8967212 C G KIDINS220 Missense_Mutation p.L4F 0.09 deleterious(0) possibly_damaging(0.846) TCGA-UY-A78K-01 2 90458404 90458404 C T CH17-132F21.1 Missense_Mutation p.S27F 0.15 TCGA-UY-A78K-01 2 96795665 96795665 T A ASTL Missense_Mutation p.S258C 0.07 deleterious(0) probably_damaging(0.95) TCGA-UY-A78K-01 2 97427798 97427798 C T CNNM4 Silent p.L354L 0.11 TCGA-UY-A78K-01 2 97507879 97507879 G T ANKRD23 Missense_Mutation p.A73D 0.19 tolerated(0.6) benign(0.016) TCGA-UY-A78K-01 2 98408996 98408996 C T TMEM131 Missense_Mutation p.E1333K 0.21 deleterious_low_confidence(0.04) probably_damaging(0.98) TCGA-UY-A78K-01 2 98750353 98750353 C A VWA3B Missense_Mutation p.D313E 0.16 tolerated(0.23) benign(0.04) TCGA-UY-A78K-01 2 98916601 98916601 T G VWA3B Silent p.P1114P 0.05 TCGA-UY-A78K-01 3 10276251 10276251 A G IRAK2 Missense_Mutation p.K461E 0.07 deleterious(0.03) benign(0.41) TCGA-UY-A78K-01 3 108117630 108117630 C T MYH15 Missense_Mutation p.V1683M 0.07 tolerated(0.09) probably_damaging(0.97) TCGA-UY-A78K-01 3 108363414 108363414 G T DZIP3 Missense_Mutation p.E515D 0.05 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-UY-A78K-01 3 108672599 108672599 C A GUCA1C Missense_Mutation p.G4V 0.09 tolerated(0.14) benign(0.014) TCGA-UY-A78K-01 3 111356988 111356988 A G CD96 Missense_Mutation p.T500A 0.22 deleterious(0.01) benign(0.125) TCGA-UY-A78K-01 3 111632189 111632189 C A PHLDB2 Silent p.I453I 0.09 TCGA-UY-A78K-01 3 112357282 112357282 T C CCDC80 Missense_Mutation p.K491E 0.09 deleterious(0.01) probably_damaging(0.98) TCGA-UY-A78K-01 3 112969529 112969529 G C BOC Silent p.L75L 0.07 TCGA-UY-A78K-01 3 113658834 113658834 A C GRAMD1C Missense_Mutation p.K598T 0.07 tolerated(0.16) benign(0.017) TCGA-UY-A78K-01 3 122418338 122418338 A T PARP14 Nonsense_Mutation p.K313* 0.07 TCGA-UY-A78K-01 3 126132968 126132968 T C CCDC37 Silent p.S57S 0.06 TCGA-UY-A78K-01 3 12845086 12845086 C A CAND2 Silent p.L56L 0.08 TCGA-UY-A78K-01 3 128612493 128612493 G A ACAD9 Missense_Mutation p.E114K 0.09 tolerated(0.07) possibly_damaging(0.905) TCGA-UY-A78K-01 3 130313126 130313126 G T COL6A6 Missense_Mutation p.G1491V 0.40 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 3 132405184 132405184 A T NPHP3 Silent p.L1083L 0.09 TCGA-UY-A78K-01 3 134898818 134898818 G A EPHB1 Missense_Mutation p.G626R 0.25 deleterious(0.01) probably_damaging(1) TCGA-UY-A78K-01 3 142180913 142180913 T A ATR Missense_Mutation p.E2354V 0.08 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 3 142257461 142257461 C T ATR Nonsense_Mutation p.W1196* 0.33 TCGA-UY-A78K-01 3 142430415 142430415 G C PLS1 Missense_Mutation p.E568Q 0.09 tolerated(0.07) probably_damaging(0.975) TCGA-UY-A78K-01 3 14706567 14706567 G T CCDC174 Missense_Mutation p.R173L 0.05 deleterious(0) possibly_damaging(0.726) TCGA-UY-A78K-01 3 148459803 148459803 C G AGTR1 Missense_Mutation p.H327Q 0.06 tolerated(0.06) benign(0.006) TCGA-UY-A78K-01 3 148583274 148583274 G A CPA3 Missense_Mutation p.R28H 0.09 deleterious(0.02) benign(0.407) TCGA-UY-A78K-01 3 14862277 14862277 G C FGD5 Missense_Mutation p.E567Q 0.10 tolerated(0.12) benign(0.156) TCGA-UY-A78K-01 3 15300307 15300307 C T SH3BP5 Intron 0.10 TCGA-UY-A78K-01 3 155545978 155545978 G C SLC33A1 3'UTR 0.06 TCGA-UY-A78K-01 3 156254499 156254499 G A KCNAB1 Missense_Mutation p.R408H 0.30 deleterious(0.01) possibly_damaging(0.532) TCGA-UY-A78K-01 3 157160446 157160446 A G PTX3 Missense_Mutation p.N275S 0.10 tolerated(1) benign(0.01) TCGA-UY-A78K-01 3 160143863 160143863 G T SMC4 Missense_Mutation p.R827L 0.07 tolerated(0.09) benign(0.002) TCGA-UY-A78K-01 3 164697182 164697182 G C SI Missense_Mutation p.L1818V 0.06 tolerated(0.1) benign(0.004) TCGA-UY-A78K-01 3 167761257 167761257 C A GOLIM4 Missense_Mutation p.G143W 0.05 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 3 169579586 169579586 G A LRRC31 Missense_Mutation p.S64L 0.10 tolerated(0.08) benign(0.004) TCGA-UY-A78K-01 3 170079211 170079211 A T SKIL Missense_Mutation p.Q364H 0.08 tolerated(0.14) benign(0.003) TCGA-UY-A78K-01 3 170108878 170108878 C T SKIL Nonsense_Mutation p.Q576* 0.09 TCGA-UY-A78K-01 3 170204086 170204086 T A SLC7A14 Missense_Mutation p.E277D 0.11 deleterious(0.01) probably_damaging(1) TCGA-UY-A78K-01 3 17053297 17053297 A G PLCL2 Missense_Mutation p.N694S 0.11 tolerated(0.21) possibly_damaging(0.817) TCGA-UY-A78K-01 3 17209312 17209312 G C TBC1D5 Missense_Mutation p.Q643E 0.08 deleterious(0) probably_damaging(0.997) TCGA-UY-A78K-01 3 172351372 172351372 C G NCEH1 Missense_Mutation p.E414Q 0.08 deleterious(0.03) possibly_damaging(0.517) TCGA-UY-A78K-01 3 172473107 172473108 AA - ECT2 Frame_Shift_Del p.R52Sfs*21 0.09 TCGA-UY-A78K-01 3 182913023 182913023 C G MCF2L2 Missense_Mutation p.E969Q 0.10 tolerated(0.42) benign(0.004) TCGA-UY-A78K-01 3 183700381 183700381 C G ABCC5 Missense_Mutation p.R286T 0.10 deleterious(0.05) probably_damaging(0.985) TCGA-UY-A78K-01 3 183772531 183772531 C G HTR3C Missense_Mutation p.I30M 0.07 deleterious(0) possibly_damaging(0.507) TCGA-UY-A78K-01 3 184049370 184049370 C G EIF4G1 Missense_Mutation p.N1464K 0.06 deleterious(0) benign(0.169) TCGA-UY-A78K-01 3 185986683 185986683 T A DGKG Missense_Mutation p.E341D 0.14 tolerated(0.1) benign(0.044) TCGA-UY-A78K-01 3 186362598 186362598 C T FETUB Silent p.D161D 0.12 TCGA-UY-A78K-01 3 186760468 186760468 G A ST6GAL1 5'UTR 0.10 TCGA-UY-A78K-01 3 194061874 194061874 T A CPN2 Missense_Mutation p.S520C 0.12 deleterious(0.02) benign(0.048) TCGA-UY-A78K-01 3 196612094 196612094 C T SENP5 Silent p.H14H 0.08 TCGA-UY-A78K-01 3 196627284 196627284 G A SENP5 Splice_Site p.X602_splice 0.10 TCGA-UY-A78K-01 3 196735753 196735753 C G MFI2 Missense_Mutation p.G537R 0.05 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 3 197541808 197541808 C G LRCH3 Missense_Mutation p.P98A 0.12 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 3 19961384 19961384 T A EFHB Missense_Mutation p.N313Y 0.10 deleterious(0.02) benign(0.133) TCGA-UY-A78K-01 3 2908534 2908534 G C CNTN4 Missense_Mutation p.E185Q 0.08 tolerated(0.22) benign(0.301) TCGA-UY-A78K-01 3 2924920 2924920 T C CNTN4 Silent p.F248F 0.12 TCGA-UY-A78K-01 3 37081765 37081765 T C MLH1 Silent p.L549L 0.08 TCGA-UY-A78K-01 3 37860434 37860434 G A ITGA9 Missense_Mutation p.R1021Q 0.09 deleterious(0.02) possibly_damaging(0.787) TCGA-UY-A78K-01 3 38597162 38597162 G A SCN5A Silent p.P1509P 0.09 TCGA-UY-A78K-01 3 42799650 42799650 C T CCDC13 Missense_Mutation p.G63E 0.15 tolerated(0.34) benign(0.035) TCGA-UY-A78K-01 3 431090 431090 C A CHL1 Silent p.V801V 0.08 TCGA-UY-A78K-01 3 44763917 44763917 A T ZNF502 Missense_Mutation p.R536S 0.07 tolerated(0.08) benign(0.219) TCGA-UY-A78K-01 3 44948662 44948662 G T TGM4 Missense_Mutation p.D433Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 3 45988231 45988231 C G CXCR6 Missense_Mutation p.F86L 0.09 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 3 45989102 45989102 C A CXCR6 3'UTR 0.12 TCGA-UY-A78K-01 3 49095257 49095257 G A QRICH1 Missense_Mutation p.H126Y 0.08 tolerated_low_confidence(0.09) benign(0.152) TCGA-UY-A78K-01 3 49466574 49466574 G C NICN1 Missense_Mutation p.I33M 0.13 deleterious(0.01) probably_damaging(0.925) TCGA-UY-A78K-01 3 49755780 49755780 A G AMIGO3 Silent p.F373F 0.11 TCGA-UY-A78K-01 3 49755782 49755782 A G AMIGO3 Missense_Mutation p.F373L 0.09 tolerated(0.49) benign(0.002) TCGA-UY-A78K-01 3 49879968 49879968 A G TRAIP Missense_Mutation p.Y141H 0.25 deleterious(0) possibly_damaging(0.873) TCGA-UY-A78K-01 3 5025203 5025203 C T BHLHE40 Silent p.L355L 0.10 TCGA-UY-A78K-01 3 51978422 51978422 C G PARP3 Nonsense_Mutation p.S117* 0.08 TCGA-UY-A78K-01 3 52020507 52020507 T C ACY1 Silent p.F171F 0.09 TCGA-UY-A78K-01 3 52238004 52238004 C T ALAS1 Missense_Mutation p.L185F 0.08 tolerated(0.05) benign(0.062) TCGA-UY-A78K-01 3 52383051 52383051 C T DNAH1 Nonsense_Mutation p.R752* 0.08 TCGA-UY-A78K-01 3 52437490 52437490 G C BAP1 Missense_Mutation p.I557M 0.09 deleterious(0.03) benign(0.143) TCGA-UY-A78K-01 3 56766365 56766365 G T ARHGEF3 Missense_Mutation p.Q409K 0.08 deleterious(0) probably_damaging(0.935) TCGA-UY-A78K-01 3 58124086 58124086 A G FLNB Missense_Mutation p.K1678E 0.11 tolerated(0.07) probably_damaging(0.963) TCGA-UY-A78K-01 3 62631413 62631413 C T CADPS Missense_Mutation p.E437K 0.09 deleterious(0.05) benign(0.305) TCGA-UY-A78K-01 3 66448550 66448550 C T LRIG1 Silent p.K430K 0.11 TCGA-UY-A78K-01 3 67570960 67570960 C A SUCLG2 Missense_Mutation p.Q172H 0.07 deleterious(0.03) benign(0.013) TCGA-UY-A78K-01 3 69168276 69168276 G C LMOD3 Silent p.L410L 0.10 TCGA-UY-A78K-01 3 73096400 73096400 C T PPP4R2 Silent p.F60F 0.09 TCGA-UY-A78K-01 3 7620569 7620569 G A GRM7 Missense_Mutation p.R659Q 0.04 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 3 77147265 77147265 G C ROBO2 Silent p.A70A 0.16 TCGA-UY-A78K-01 3 77600136 77600136 T A ROBO2 Silent p.T425T 0.06 TCGA-UY-A78K-01 3 93611943 93611943 C T PROS1 Missense_Mutation p.R330Q 0.07 deleterious(0) probably_damaging(0.993) TCGA-UY-A78K-01 3 96963131 96963131 G T EPHA6 Missense_Mutation p.A536S 0.11 deleterious(0.03) benign(0.099) TCGA-UY-A78K-01 3 98002424 98002424 A G OR5H2 Silent p.L231L 0.09 TCGA-UY-A78K-01 3 98109699 98109699 G T OR5K3 Missense_Mutation p.G64C 0.09 deleterious(0) probably_damaging(0.968) TCGA-UY-A78K-01 3 98526975 98526975 G T DCBLD2 Silent p.V540V 0.10 TCGA-UY-A78K-01 3 9948763 9948763 G A IL17RE Silent p.L215L 0.09 TCGA-UY-A78K-01 4 114199662 114199662 A C ANK2 Missense_Mutation p.K610T 0.15 possibly_damaging(0.772) TCGA-UY-A78K-01 4 114257930 114257930 C T ANK2 Silent p.S1263S 0.06 TCGA-UY-A78K-01 4 122250557 122250557 T G QRFPR Missense_Mutation p.Q403P 0.11 deleterious(0.05) benign(0.022) TCGA-UY-A78K-01 4 126371954 126371954 G A FAT4 Silent p.K3261K 0.10 TCGA-UY-A78K-01 4 126398444 126398444 C A FAT4 Missense_Mutation p.P4143H 0.08 probably_damaging(0.999) TCGA-UY-A78K-01 4 126411544 126411544 C A FAT4 Missense_Mutation p.L4523M 0.14 probably_damaging(0.997) TCGA-UY-A78K-01 4 13605052 13605055 TTTT - BOD1L1 Frame_Shift_Del p.K1157Lfs*10 0.16 TCGA-UY-A78K-01 4 148406865 148406865 G T EDNRA Missense_Mutation p.W11L 0.13 tolerated_low_confidence(1) benign(0) TCGA-UY-A78K-01 4 155243620 155243620 T G DCHS2 Missense_Mutation p.K892Q 0.09 tolerated(0.42) possibly_damaging(0.462) TCGA-UY-A78K-01 4 162402200 162402200 A G FSTL5 Missense_Mutation p.V527A 0.29 deleterious(0) probably_damaging(0.93) TCGA-UY-A78K-01 4 184938384 184938384 G A STOX2 Missense_Mutation p.E910K 0.19 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-UY-A78K-01 4 186366567 186366567 G C CCDC110 3'UTR 0.19 TCGA-UY-A78K-01 4 187517722 187517722 C T FAT1 Silent p.Q4324Q 0.08 TCGA-UY-A78K-01 4 1993343 1993343 C G NELFA Missense_Mutation p.G115R 0.19 deleterious(0) possibly_damaging(0.8) TCGA-UY-A78K-01 4 24550571 24550571 G A DHX15 Silent p.I385I 0.07 TCGA-UY-A78K-01 4 24556553 24556553 C A DHX15 Missense_Mutation p.S292I 0.12 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 4 2659571 2659571 G A FAM193A Nonsense_Mutation p.W160* 0.08 TCGA-UY-A78K-01 4 30725522 30725522 G T PCDH7 Missense_Mutation p.Q826H 0.31 tolerated(0.07) benign(0.026) TCGA-UY-A78K-01 4 39291611 39291611 G C RFC1 Missense_Mutation p.P1074A 0.26 deleterious(0.02) probably_damaging(0.925) TCGA-UY-A78K-01 4 39512333 39512333 T C UGDH Missense_Mutation p.E138G 0.13 deleterious(0.01) benign(0.22) TCGA-UY-A78K-01 4 39978107 39978107 C G PDS5A Missense_Mutation p.E31Q 0.13 tolerated(0.12) probably_damaging(0.994) TCGA-UY-A78K-01 4 47559725 47559725 A G ATP10D Silent p.E623E 0.18 TCGA-UY-A78K-01 4 47944083 47944083 A C CNGA1 Missense_Mutation p.Y247D 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 4 56820379 56820379 A T CEP135 Intron 0.09 TCGA-UY-A78K-01 4 57897110 57897110 G A POLR2B Missense_Mutation p.E1161K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A78K-01 4 6296891 6296891 C T WFS1 Missense_Mutation p.P279L 0.13 deleterious(0.02) probably_damaging(0.943) TCGA-UY-A78K-01 4 69535910 69535910 C G UGT2B15 Missense_Mutation p.E143Q 0.09 tolerated(0.17) benign(0.168) TCGA-UY-A78K-01 4 74352710 74352710 A T AFM Missense_Mutation p.N170I 0.06 deleterious(0.01) probably_damaging(0.954) TCGA-UY-A78K-01 4 75248368 75248368 A G EREG Silent p.E95E 0.05 TCGA-UY-A78K-01 4 7870360 7870360 G A AFAP1 Nonsense_Mutation p.Q72* 0.18 TCGA-UY-A78K-01 4 78806487 78806487 T C MRPL1 Silent p.F160F 0.08 TCGA-UY-A78K-01 4 79500216 79500216 G C ANXA3 Missense_Mutation p.E47Q 0.06 tolerated(0.31) benign(0.062) TCGA-UY-A78K-01 4 8233834 8233834 C G SH3TC1 Missense_Mutation p.Q1028E 0.12 tolerated(0.24) benign(0.441) TCGA-UY-A78K-01 4 96761498 96761498 T A PDHA2 Missense_Mutation p.M66K 0.17 deleterious(0.03) probably_damaging(0.947) TCGA-UY-A78K-01 5 110560256 110560256 C G CAMK4 Silent p.T25T 0.26 TCGA-UY-A78K-01 5 112896841 112896841 T A YTHDC2 Missense_Mutation p.L761M 0.10 tolerated(0.21) benign(0.097) TCGA-UY-A78K-01 5 118485222 118485222 G A DMXL1 Missense_Mutation p.E1234K 0.14 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 5 121488577 121488577 C A ZNF474 Missense_Mutation p.R298S 0.09 deleterious(0.02) benign(0.088) TCGA-UY-A78K-01 5 127487015 127487015 T C SLC12A2 Silent p.I730I 0.13 TCGA-UY-A78K-01 5 127873307 127873307 G T FBN2 5'UTR 0.20 TCGA-UY-A78K-01 5 128994340 128994340 C A ADAMTS19 Missense_Mutation p.L773I 0.12 tolerated(0.23) benign(0.269) TCGA-UY-A78K-01 5 131607483 131607483 G A PDLIM4 Splice_Site p.X224_splice 0.12 TCGA-UY-A78K-01 5 133898010 133898010 A C JADE2 Missense_Mutation p.S269R 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 5 137474370 137474370 T G NME5 Missense_Mutation p.I34L 0.18 deleterious(0.02) probably_damaging(0.951) TCGA-UY-A78K-01 5 140167524 140167524 C T PCDHA1 Missense_Mutation p.T550M 0.12 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-UY-A78K-01 5 140229458 140229458 T C PCDHA9 Missense_Mutation p.Y460H 0.22 deleterious_low_confidence(0.02) benign(0.4) TCGA-UY-A78K-01 5 140237532 140237532 G A PCDHA10 Silent p.T633T 0.07 TCGA-UY-A78K-01 5 140263219 140263219 G A PCDHA13 Missense_Mutation p.A456T 0.20 tolerated_low_confidence(0.06) benign(0.016) TCGA-UY-A78K-01 5 140431067 140431067 G A PCDHB1 Silent p.T4T 0.30 TCGA-UY-A78K-01 5 140573632 140573632 C A PCDHB10 Missense_Mutation p.L503M 0.10 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-UY-A78K-01 5 140574115 140574115 G C PCDHB10 Missense_Mutation p.D664H 0.29 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-UY-A78K-01 5 140581595 140581595 C T PCDHB11 Nonsense_Mutation p.Q750* 0.07 TCGA-UY-A78K-01 5 140604044 140604044 G A PCDHB14 Missense_Mutation p.D323N 0.07 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-UY-A78K-01 5 140625714 140625714 A G PCDHB15 Missense_Mutation p.K190E 0.08 deleterious_low_confidence(0.01) benign(0.111) TCGA-UY-A78K-01 5 140735192 140735192 T C PCDHGA4 Missense_Mutation p.V142A 0.19 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-UY-A78K-01 5 140735649 140735649 G C PCDHGA4 Missense_Mutation p.L294F 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UY-A78K-01 5 140736482 140736482 C A PCDHGA4 Missense_Mutation p.S572Y 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UY-A78K-01 5 140745605 140745605 G A PCDHGA5 Missense_Mutation p.D570N 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-UY-A78K-01 5 140790145 140790145 T A PCDHGB6 Missense_Mutation p.H792Q 0.12 tolerated(0.64) benign(0.002) TCGA-UY-A78K-01 5 143200161 143200161 C G HMHB1 3'UTR 0.08 TCGA-UY-A78K-01 5 150897310 150897310 G A FAT2 Silent p.F3778F 0.06 TCGA-UY-A78K-01 5 161324242 161324242 A G GABRA1 Missense_Mutation p.I395M 0.15 tolerated(0.13) possibly_damaging(0.601) TCGA-UY-A78K-01 5 16935895 16935895 A C MYO10 Splice_Site p.X7_splice 0.10 TCGA-UY-A78K-01 5 180338579 180338579 T G BTNL8 Missense_Mutation p.L213R 0.17 deleterious(0.02) benign(0.005) TCGA-UY-A78K-01 5 19838904 19838904 T A CDH18 Missense_Mutation p.E64D 0.10 deleterious(0) possibly_damaging(0.554) TCGA-UY-A78K-01 5 19839039 19839039 C A CDH18 Silent p.V19V 0.06 TCGA-UY-A78K-01 5 31508880 31508880 T A DROSHA Missense_Mutation p.S479C 0.27 tolerated(0.1) benign(0.007) TCGA-UY-A78K-01 5 32355862 32355862 C A ZFR 3'UTR 0.11 TCGA-UY-A78K-01 5 354021 354021 T C AHRR Missense_Mutation p.F84S 0.25 deleterious(0) probably_damaging(0.987) TCGA-UY-A78K-01 5 35740312 35740312 T C SPEF2 Silent p.L1091L 0.19 TCGA-UY-A78K-01 5 37186440 37186440 T C C5orf42 Silent p.L1379L 0.08 TCGA-UY-A78K-01 5 37727103 37727103 A T WDR70 Missense_Mutation p.K611N 0.08 deleterious(0) possibly_damaging(0.873) TCGA-UY-A78K-01 5 38352434 38352434 G A EGFLAM Splice_Site p.X182_splice 0.38 TCGA-UY-A78K-01 5 40763068 40763068 T A PRKAA1 Missense_Mutation p.S513C 0.22 deleterious(0.01) possibly_damaging(0.669) TCGA-UY-A78K-01 5 52369038 52369038 A G ITGA2 Silent p.G840G 0.16 TCGA-UY-A78K-01 5 60067826 60067826 T C ELOVL7 Silent p.P53P 0.12 TCGA-UY-A78K-01 5 74676897 74676897 C T COL4A3BP Missense_Mutation p.V711M 0.12 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 5 75979011 75979011 G T IQGAP2 Silent p.L1244L 0.14 TCGA-UY-A78K-01 5 90670889 90670889 C A ARRDC3 Missense_Mutation p.M240I 0.12 tolerated(0.33) benign(0.14) TCGA-UY-A78K-01 5 94727186 94727186 T G FAM81B Missense_Mutation p.N31K 0.15 deleterious_low_confidence(0.01) benign(0.001) TCGA-UY-A78K-01 6 100062504 100062504 G A PRDM13 Missense_Mutation p.G665S 0.07 tolerated_low_confidence(0.13) benign(0.173) TCGA-UY-A78K-01 6 107533322 107533322 C G PDSS2 Missense_Mutation p.M289I 0.04 tolerated(0.1) benign(0.002) TCGA-UY-A78K-01 6 10990675 10990675 C A ELOVL2 Missense_Mutation p.S169I 0.18 deleterious(0) possibly_damaging(0.724) TCGA-UY-A78K-01 6 110424744 110424744 C A WASF1 Missense_Mutation p.D244Y 0.07 deleterious(0.02) unknown(0) TCGA-UY-A78K-01 6 110620186 110620186 T C METTL24 Missense_Mutation p.Q242R 0.13 tolerated(0.26) benign(0.006) TCGA-UY-A78K-01 6 110768123 110768123 C A SLC22A16 Missense_Mutation p.A202S 0.11 tolerated(0.39) benign(0.015) TCGA-UY-A78K-01 6 112452196 112452196 G A LAMA4 Silent p.F1314F 0.13 TCGA-UY-A78K-01 6 116972752 116972752 C T ZUFSP Silent p.L433L 0.08 TCGA-UY-A78K-01 6 116987904 116987904 T C ZUFSP Missense_Mutation p.Y151C 0.14 tolerated(0.07) benign(0.431) TCGA-UY-A78K-01 6 126342384 126342384 A T TRMT11 Silent p.T406T 0.07 TCGA-UY-A78K-01 6 127517163 127517163 G A RSPO3 3'UTR 0.07 TCGA-UY-A78K-01 6 127837622 127837622 C T SOGA3 Silent p.R46R 0.07 TCGA-UY-A78K-01 6 13206080 13206080 C T PHACTR1 Missense_Mutation p.P233L 0.16 deleterious(0.04) possibly_damaging(0.851) TCGA-UY-A78K-01 6 132189231 132189231 A G ENPP1 Missense_Mutation p.H413R 0.11 deleterious(0) possibly_damaging(0.756) TCGA-UY-A78K-01 6 132892024 132892024 A G TAAR6 Silent p.G188G 0.06 TCGA-UY-A78K-01 6 134212881 134212881 G C TCF21 Missense_Mutation p.E161Q 0.08 tolerated(0.06) benign(0.051) TCGA-UY-A78K-01 6 13620550 13620550 A G NOL7 Missense_Mutation p.N204S 0.08 tolerated(0.15) benign(0.056) TCGA-UY-A78K-01 6 136554530 136554530 T C MTFR2 Missense_Mutation p.D326G 0.11 deleterious(0) benign(0.334) TCGA-UY-A78K-01 6 136596726 136596726 T C BCLAF1 Missense_Mutation p.K599R 0.04 tolerated(1) possibly_damaging(0.486) TCGA-UY-A78K-01 6 136596732 136596732 G T BCLAF1 Missense_Mutation p.A597D 0.05 tolerated(0.16) possibly_damaging(0.82) TCGA-UY-A78K-01 6 136922962 136922962 T C MAP3K5 Silent p.K945K 0.11 TCGA-UY-A78K-01 6 145156990 145156990 G C UTRN Missense_Mutation p.S3247T 0.28 deleterious(0) probably_damaging(0.993) TCGA-UY-A78K-01 6 145156991 145156991 C T UTRN Silent p.S3247S 0.28 TCGA-UY-A78K-01 6 145156992 145156992 C T UTRN Missense_Mutation p.P3248S 0.28 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 6 152832191 152832191 G T SYNE1 Silent p.P119P 0.11 TCGA-UY-A78K-01 6 155732368 155732368 T G NOX3 Missense_Mutation p.T479P 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 6 24596446 24596446 C T KIAA0319 Silent p.E152E 0.08 TCGA-UY-A78K-01 6 26468635 26468635 C T BTN2A1 Missense_Mutation p.S481F 0.15 deleterious(0.01) benign(0.078) TCGA-UY-A78K-01 6 27100847 27100847 C T HIST1H2AG 5'UTR 0.29 TCGA-UY-A78K-01 6 31600245 31600245 G C PRRC2A Missense_Mutation p.E1265D 0.12 unknown(0) TCGA-UY-A78K-01 6 40359914 40359914 G A LRFN2 Missense_Mutation p.P713L 0.16 deleterious(0.01) possibly_damaging(0.632) TCGA-UY-A78K-01 6 43250826 43250826 G C TTBK1 Missense_Mutation p.G783A 0.40 possibly_damaging(0.73) TCGA-UY-A78K-01 6 44413541 44413541 G T CDC5L Missense_Mutation p.L747F 0.14 tolerated(0.08) benign(0.035) TCGA-UY-A78K-01 6 49696465 49696465 T C CRISP3 Missense_Mutation p.N262S 0.13 tolerated(0.4) benign(0.037) TCGA-UY-A78K-01 6 52380902 52380902 G A TRAM2 Missense_Mutation p.H105Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 6 55128600 55128600 C T HCRTR2 Missense_Mutation p.R248C 0.08 deleterious(0) probably_damaging(0.934) TCGA-UY-A78K-01 6 55223826 55223826 A G GFRAL Missense_Mutation p.D281G 0.10 tolerated(1) benign(0.002) TCGA-UY-A78K-01 6 56373374 56373374 G C DST Missense_Mutation p.P3775A 0.14 benign(0.278) TCGA-UY-A78K-01 6 64394133 64394133 A T PHF3 Missense_Mutation p.K170N 0.10 deleterious(0) probably_damaging(0.989) TCGA-UY-A78K-01 6 69728361 69728361 C T BAI3 Nonsense_Mutation p.Q693* 0.13 TCGA-UY-A78K-01 6 74407140 74407140 C T CD109 Missense_Mutation p.T31I 0.11 deleterious(0.03) benign(0.342) TCGA-UY-A78K-01 6 76618224 76618224 C G MYO6 Missense_Mutation p.L1098V 0.12 deleterious(0) probably_damaging(0.994) TCGA-UY-A78K-01 6 7884684 7884684 C T TXNDC5 Missense_Mutation p.E362K 0.21 tolerated(0.08) benign(0.041) TCGA-UY-A78K-01 6 83728704 83728704 C T UBE3D Missense_Mutation p.S333N 0.12 tolerated(0.64) benign(0.005) TCGA-UY-A78K-01 6 88321808 88321808 C G ORC3 Missense_Mutation p.Q239E 0.09 tolerated(0.22) benign(0.012) TCGA-UY-A78K-01 6 88321886 88321886 C G ORC3 Missense_Mutation p.H265D 0.16 deleterious(0.03) probably_damaging(0.925) TCGA-UY-A78K-01 6 90472191 90472191 G C MDN1 Missense_Mutation p.L735V 0.12 probably_damaging(0.98) TCGA-UY-A78K-01 6 93982043 93982043 T G EPHA7 Silent p.T474T 0.09 TCGA-UY-A78K-01 6 93982044 93982044 G C EPHA7 Missense_Mutation p.T474R 0.09 deleterious(0) possibly_damaging(0.517) TCGA-UY-A78K-01 7 100085841 100085841 G A NYAP1 Missense_Mutation p.R166Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-UY-A78K-01 7 100551404 100551404 C A MUC3A Missense_Mutation p.T52N 0.09 tolerated(0.06) unknown(0) TCGA-UY-A78K-01 7 100677232 100677232 A G MUC17 Silent p.S845S 0.09 TCGA-UY-A78K-01 7 100677255 100677255 C G MUC17 Missense_Mutation p.T853S 0.09 unknown(0) TCGA-UY-A78K-01 7 100678800 100678800 T A MUC17 Missense_Mutation p.V1368E 0.09 unknown(0) TCGA-UY-A78K-01 7 100685009 100685009 T A MUC17 Missense_Mutation p.S3438T 0.08 possibly_damaging(0.827) TCGA-UY-A78K-01 7 106520029 106520029 T A PIK3CG Missense_Mutation p.D819E 0.14 tolerated(0.23) possibly_damaging(0.685) TCGA-UY-A78K-01 7 120768504 120768504 C T CPED1 Silent p.F457F 0.09 TCGA-UY-A78K-01 7 121653266 121653266 C G PTPRZ1 Nonsense_Mutation p.S1389* 0.25 TCGA-UY-A78K-01 7 127224300 127224300 T C GCC1 Missense_Mutation p.K313E 0.09 tolerated(0.54) benign(0.021) TCGA-UY-A78K-01 7 128582186 128582186 G A IRF5 Silent p.L17L 0.07 TCGA-UY-A78K-01 7 130021687 130021687 T C CPA1 Missense_Mutation p.Y122H 0.15 deleterious(0) probably_damaging(0.998) TCGA-UY-A78K-01 7 133824269 133824269 A T LRGUK Missense_Mutation p.E162D 0.08 tolerated(0.11) benign(0.05) TCGA-UY-A78K-01 7 133868484 133868484 A G LRGUK Splice_Site p.X405_splice 0.11 TCGA-UY-A78K-01 7 134916761 134916761 T A STRA8 Missense_Mutation p.F11I 0.11 tolerated_low_confidence(0.47) benign(0) TCGA-UY-A78K-01 7 135330293 135330293 C G NUP205 Missense_Mutation p.Q1921E 0.07 tolerated(0.54) benign(0.004) TCGA-UY-A78K-01 7 137790065 137790065 T C AKR1D1 Missense_Mutation p.C157R 0.09 deleterious(0.01) probably_damaging(1) TCGA-UY-A78K-01 7 142239960 142239960 C T TRBV9 Intron 0.11 TCGA-UY-A78K-01 7 142574200 142574200 G C TRPV6 Silent p.L241L 0.11 TCGA-UY-A78K-01 7 142636691 142636691 C T C7orf34 Silent p.G16G 0.15 TCGA-UY-A78K-01 7 142836199 142836199 T C PIP Missense_Mutation p.L78P 0.09 deleterious(0.01) possibly_damaging(0.871) TCGA-UY-A78K-01 7 142962178 142962178 G A GSTK1 Nonsense_Mutation p.W126* 0.08 TCGA-UY-A78K-01 7 143772158 143772158 C A OR2A25 Silent p.P282P 0.09 TCGA-UY-A78K-01 7 14378159 14378159 C G DGKB Missense_Mutation p.E702D 0.06 tolerated(0.5) benign(0.097) TCGA-UY-A78K-01 7 146536850 146536850 C T CNTNAP2 Nonsense_Mutation p.Q86* 0.10 TCGA-UY-A78K-01 7 150417505 150417505 T C GIMAP1 Missense_Mutation p.M138T 0.09 deleterious(0.01) possibly_damaging(0.602) TCGA-UY-A78K-01 7 15652220 15652220 T A MEOX2 Missense_Mutation p.Q236L 0.09 deleterious(0) probably_damaging(0.982) TCGA-UY-A78K-01 7 16901682 16901682 G T AGR3 Missense_Mutation p.L77I 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-UY-A78K-01 7 18067008 18067008 T C PRPS1L1 Missense_Mutation p.Q133R 0.10 deleterious(0.01) possibly_damaging(0.782) TCGA-UY-A78K-01 7 23309782 23309782 G C GPNMB Missense_Mutation p.V485L 0.10 deleterious(0.01) benign(0.285) TCGA-UY-A78K-01 7 2400488 2400488 G C EIF3B Missense_Mutation p.G215R 0.08 deleterious(0) probably_damaging(0.99) TCGA-UY-A78K-01 7 31378207 31378207 C G NEUROD6 Missense_Mutation p.D226H 0.17 deleterious(0.01) benign(0.218) TCGA-UY-A78K-01 7 36450187 36450187 A T ANLN Missense_Mutation p.E387D 0.10 tolerated(0.3) benign(0.002) TCGA-UY-A78K-01 7 36661382 36661382 A G AOAH Missense_Mutation p.L196P 0.12 deleterious(0) probably_damaging(0.985) TCGA-UY-A78K-01 7 44119560 44119560 T A POLM Splice_Site p.X125_splice 0.10 TCGA-UY-A78K-01 7 44572891 44572891 A C NPC1L1 Intron 0.31 TCGA-UY-A78K-01 7 44805095 44805095 T A ZMIZ2 Missense_Mutation p.I720N 0.14 tolerated(0.05) probably_damaging(0.933) TCGA-UY-A78K-01 7 45018624 45018624 G A MYO1G 5'UTR 0.21 TCGA-UY-A78K-01 7 48335303 48335303 G T ABCA13 Nonsense_Mutation p.E2988* 0.13 TCGA-UY-A78K-01 7 51152988 51152988 G T COBL Nonsense_Mutation p.S324* 0.11 TCGA-UY-A78K-01 7 55863677 55863677 T A SEPT14 Nonsense_Mutation p.K410* 0.13 TCGA-UY-A78K-01 7 56123351 56123351 A T CCT6A Missense_Mutation p.E124V 0.12 deleterious(0.01) possibly_damaging(0.801) TCGA-UY-A78K-01 7 5645021 5645021 C T FSCN1 Silent p.G466G 0.13 TCGA-UY-A78K-01 7 57188837 57188837 T - ZNF479 Frame_Shift_Del p.D96Tfs*15 0.14 TCGA-UY-A78K-01 7 6204560 6204560 T C CYTH3 3'UTR 0.06 TCGA-UY-A78K-01 7 64438420 64438420 G C ZNF117 3'UTR 0.44 TCGA-UY-A78K-01 7 65439672 65439672 T C GUSB Missense_Mutation p.D362G 0.10 deleterious(0) probably_damaging(1) TCGA-UY-A78K-01 7 72658666 72658666 C T GTF2IRD2P1 RNA 0.06 TCGA-UY-A78K-01 7 7628184 7628184 G T MIOS Missense_Mutation p.S625I 0.08 deleterious(0.03) benign(0.436) TCGA-UY-A78K-01 7 86416185 86416185 T A GRM3 Missense_Mutation p.F359L 0.08 deleterious(0) probably_damaging(0.96) TCGA-UY-A78K-01 7 87536683 87536683 G TT DBF4 Frame_Shift_Ins p.I412Yfs*11 0.14 TCGA-UY-A78K-01 7 91851315 91851315 T A KRIT1 Silent p.P488P 0.09 TCGA-UY-A78K-01 7 92731016 92731016 C T SAMD9 Silent p.K1465K 0.15 TCGA-UY-A78K-01 8 100123455 100123455 G T VPS13B Missense_Mutation p.R237L 0.09 deleterious(0) possibly_damaging(0.726) TCGA-UY-A78K-01 8 100155328 100155328 G C VPS13B Missense_Mutation p.R593T 0.08 deleterious(0) possibly_damaging(0.587) TCGA-UY-A78K-01 8 100779154 100779154 G C VPS13B Missense_Mutation p.W2426C 0.06 deleterious(0) possibly_damaging(0.893) TCGA-UY-A78K-01 8 101276911 101276911 C T RNF19A Missense_Mutation p.A432T 0.14 deleterious(0.01) probably_damaging(0.948) TCGA-UY-A78K-01 8 101542033 101542033 G C ANKRD46 Missense_Mutation p.S10C 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-UY-A78K-01 8 101721424 101721424 G C PABPC1 Missense_Mutation p.P425A 0.03 tolerated(0.09) benign(0.016) TCGA-UY-A78K-01 8 103311099 103311099 A G UBR5 Silent p.Y1101Y 0.38 TCGA-UY-A78K-01 8 104075373 104075373 C A ATP6V1C1 Missense_Mutation p.R249S 0.12 deleterious(0) probably_damaging(0.966) TCGA-UY-A78K-01 8 104337490 104337490 C T FZD6 Missense_Mutation p.L386F 0.15 deleterious(0) probably_damaging(0.991) TCGA-UY-A78K-01 8 105503119 105503119 C A LRP12 Missense_Mutation p.V788L 0.10 tolerated_low_confidence(0.67) benign(0) TCGA-UY-A78K-01 8 107715282 107715283 AA - OXR1 Frame_Shift_Del p.E276Dfs*4 0.08 TCGA-UY-A78K-01 8 110503214 110503214 G C PKHD1L1 Missense_Mutation p.G3333A 0.10 tolerated(0.49) benign(0.034) TCGA-UY-A78K-01 8 133596026 133596026 C T LRRC6 Missense_Mutation p.V381I 0.44 tolerated(0.13) benign(0.029) TCGA-UY-A78K-01 8 143856782 143856782 C T LYNX1 Intron 0.16 TCGA-UY-A78K-01 8 144804019 144804019 G A MAPK15 Missense_Mutation p.G476D 0.18 tolerated(0.16) benign(0.022) TCGA-UY-A78K-01 8 145133752 145133752 A G EXOSC4 Missense_Mutation p.I41V 0.24 tolerated(0.34) benign(0.022) TCGA-UY-A78K-01 8 145583960 145583960 C T SLC52A2 Nonsense_Mutation p.Q270* 0.11 TCGA-UY-A78K-01 8 145726595 145726595 A G PPP1R16A Missense_Mutation p.Q374R 0.08 tolerated(0.13) benign(0.02) TCGA-UY-A78K-01 8 21827719 21827719 T C XPO7 Silent p.L108L 0.14 TCGA-UY-A78K-01 8 22333067 22333067 G T PPP3CC Missense_Mutation p.G101V 0.11 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 8 23006055 23006055 C G TNFRSF10D Missense_Mutation p.R89T 0.13 tolerated(0.31) probably_damaging(0.921) TCGA-UY-A78K-01 8 3265698 3265698 T A CSMD1 Silent p.P598P 0.16 TCGA-UY-A78K-01 8 38175525 38175525 G C WHSC1L1 Intron 0.10 TCGA-UY-A78K-01 8 42977357 42977357 A T POMK Missense_Mutation p.Q130H 0.16 deleterious(0) possibly_damaging(0.676) TCGA-UY-A78K-01 8 53071571 53071571 G T ST18 Missense_Mutation p.Q565K 0.13 tolerated(0.18) benign(0.264) TCGA-UY-A78K-01 8 59511909 59511909 A G NSMAF Silent p.F520F 0.08 TCGA-UY-A78K-01 8 59514698 59514698 T C NSMAF Splice_Site p.X380_splice 0.07 TCGA-UY-A78K-01 8 61736421 61736421 A G CHD7 Missense_Mutation p.Y1075C 0.08 probably_damaging(0.999) TCGA-UY-A78K-01 8 70513947 70513947 C A SULF1 Missense_Mutation p.A315D 0.12 deleterious(0) possibly_damaging(0.772) TCGA-UY-A78K-01 8 71520342 71520342 C A TRAM1 Silent p.A31A 0.15 TCGA-UY-A78K-01 8 82751845 82751845 A T SNX16 Splice_Site p.X125_splice 0.07 TCGA-UY-A78K-01 8 87755755 87755755 C G CNGB3 Missense_Mutation p.S34T 0.39 tolerated(0.36) benign(0.001) TCGA-UY-A78K-01 8 94935658 94935658 G C PDP1 Missense_Mutation p.Q482H 0.13 tolerated(0.17) probably_damaging(0.958) TCGA-UY-A78K-01 8 95186372 95186372 G C CDH17 Missense_Mutation p.Q181E 0.11 tolerated(0.06) possibly_damaging(0.521) TCGA-UY-A78K-01 8 95848812 95848812 G T INTS8 Nonsense_Mutation p.E272* 0.07 TCGA-UY-A78K-01 8 97269424 97269424 C T MTERFD1 Intron 0.13 TCGA-UY-A78K-01 9 101507944 101507944 G A ANKS6 Missense_Mutation p.A803V 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-UY-A78K-01 9 1056642 1056642 A G DMRT2 Missense_Mutation p.D352G 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UY-A78K-01 9 117139798 117139798 C T AKNA Missense_Mutation p.D97N 0.08 deleterious(0.02) benign(0.172) TCGA-UY-A78K-01 9 128001351 128001351 G A HSPA5 Missense_Mutation p.R289W 0.08 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-UY-A78K-01 9 130117672 130117672 A G GARNL3 Missense_Mutation p.N619S 0.05 tolerated(0.77) benign(0.002) TCGA-UY-A78K-01 9 130988375 130988375 C A DNM1 Intron 0.17 TCGA-UY-A78K-01 9 13133860 13133860 C T MPDZ Missense_Mutation p.S1476N 0.12 tolerated(0.08) benign(0.004) TCGA-UY-A78K-01 9 131388257 131388257 G A SPTAN1 Silent p.K2093K 0.09 TCGA-UY-A78K-01 9 131747191 131747191 G A NUP188 Missense_Mutation p.M658I 0.23 tolerated(0.06) possibly_damaging(0.843) TCGA-UY-A78K-01 9 132637007 132637007 G A USP20 Silent p.S631S 0.14 TCGA-UY-A78K-01 9 135204826 135204826 G T SETX Nonsense_Mutation p.S720* 0.05 TCGA-UY-A78K-01 9 137801832 137801832 C T FCN1 Missense_Mutation p.V265M 0.11 tolerated(0.21) benign(0.014) TCGA-UY-A78K-01 9 139369694 139369694 C A SEC16A Nonsense_Mutation p.E792* 0.31 TCGA-UY-A78K-01 9 139889207 139889207 T C CLIC3 Missense_Mutation p.K213E 0.17 tolerated(0.53) benign(0.002) TCGA-UY-A78K-01 9 140157639 140157639 G A NELFB Missense_Mutation p.V250M 0.38 deleterious(0) possibly_damaging(0.604) TCGA-UY-A78K-01 9 15182308 15182308 G A TTC39B Nonsense_Mutation p.Q574* 0.13 TCGA-UY-A78K-01 9 16437495 16437495 A T BNC2 Missense_Mutation p.W233R 0.09 deleterious(0) probably_damaging(0.999) TCGA-UY-A78K-01 9 21187588 21187588 C G IFNA4 5'UTR 0.14 TCGA-UY-A78K-01 9 21206419 21206419 G C IFNA10 3'UTR 0.07 TCGA-UY-A78K-01 9 32632467 32632467 T C TAF1L Silent p.K1037K 0.09 TCGA-UY-A78K-01 9 33385023 33385023 T C AQP7 Missense_Mutation p.M337V 0.08 tolerated_low_confidence(0.38) benign(0.001) TCGA-UY-A78K-01 9 34107382 34107382 G T DCAF12 Missense_Mutation p.T172K 0.06 tolerated(0.06) benign(0.234) TCGA-UY-A78K-01 9 35547446 35547446 T C RUSC2 Missense_Mutation p.S310P 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-UY-A78K-01 9 37888590 37888590 C T SLC25A51 Splice_Site 0.22 TCGA-UY-A78K-01 9 41962625 41962625 C T RP11-204M4.2 RNA 0.09 TCGA-UY-A78K-01 9 731234 731234 A G KANK1 Silent p.K991K 0.21 TCGA-UY-A78K-01 9 74587633 74587633 G C C9orf85 Missense_Mutation p.E117Q 0.06 tolerated(0.15) possibly_damaging(0.742) TCGA-UY-A78K-01 9 8518002 8518002 G A PTPRD Silent p.V463V 0.07 TCGA-UY-A78K-01 9 85597582 85597582 T C RASEF 3'UTR 0.19 TCGA-UY-A78K-01 9 86518733 86518733 G A KIF27 Missense_Mutation p.R234W 0.06 deleterious(0) possibly_damaging(0.893) TCGA-UY-A78K-01 9 88270124 88270124 G C AGTPBP1 Intron 0.19 TCGA-UY-A78K-01 9 90497995 90497995 C G SPATA31E1 Silent p.P63P 0.19 TCGA-UY-A78K-01 9 97207303 97207303 T C HIATL1 Missense_Mutation p.S190P 0.08 tolerated(0.1) possibly_damaging(0.905) TCGA-UY-A78K-01 9 99304166 99304166 G C CDC14B Missense_Mutation p.A169G 0.14 deleterious(0) benign(0.186) TCGA-UY-A78K-01 9 99304167 99304167 C T CDC14B Missense_Mutation p.A169T 0.14 deleterious(0) benign(0.102) TCGA-UY-A78K-01 X 101581400 101581400 C T NXF2 Missense_Mutation p.P618L 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-UY-A78K-01 X 102334740 102334740 C G NXF3 Missense_Mutation p.E371Q 0.14 tolerated(0.13) possibly_damaging(0.734) TCGA-UY-A78K-01 X 105855501 105855501 C T CXorf57 Missense_Mutation p.S64L 0.19 tolerated(0.08) benign(0.009) TCGA-UY-A78K-01 X 123517711 123517711 T C TENM1 Missense_Mutation p.Y2357C 0.45 deleterious(0) benign(0.06) TCGA-UY-A78K-01 X 130408614 130408614 C T IGSF1 Nonsense_Mutation p.W1242* 0.43 TCGA-UY-A78K-01 X 134427985 134427985 C T ZNF75D Missense_Mutation p.E28K 0.43 deleterious(0) possibly_damaging(0.899) TCGA-UY-A78K-01 X 138680590 138680590 A G MCF2 Missense_Mutation p.I711T 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78K-01 X 1404676 1404676 C A CSF2RA Silent p.R28R 0.04 TCGA-UY-A78K-01 X 147088268 147088268 G T FMR1NB Silent p.L148L 0.16 TCGA-UY-A78K-01 X 150869283 150869283 G T PRRG3 Silent p.V158V 0.19 TCGA-UY-A78K-01 X 150891174 150891174 C A FATE1 Silent p.I165I 0.19 TCGA-UY-A78K-01 X 153052950 153052950 T A IDH3G Nonsense_Mutation p.K215* 0.21 TCGA-UY-A78K-01 X 153138055 153138055 G C L1CAM Silent p.P63P 0.32 TCGA-UY-A78K-01 X 153418477 153418477 C A OPN1LW Silent p.P158P 0.06 TCGA-UY-A78K-01 X 153543680 153543680 A G TKTL1 Missense_Mutation p.Q341R 0.10 deleterious(0) possibly_damaging(0.744) TCGA-UY-A78K-01 X 153688880 153688880 C A PLXNA3 Silent p.I119I 0.13 TCGA-UY-A78K-01 X 153695958 153695958 C T PLXNA3 Missense_Mutation p.P1171L 0.58 tolerated(0.18) probably_damaging(0.991) TCGA-UY-A78K-01 X 153715959 153715959 G C SLC10A3 Missense_Mutation p.Q441E 0.21 tolerated(0.49) probably_damaging(0.977) TCGA-UY-A78K-01 X 154158595 154158595 A G F8 Missense_Mutation p.V1157A 0.12 tolerated(0.32) benign(0.206) TCGA-UY-A78K-01 X 1546656 1546656 C G ASMTL Missense_Mutation p.E290Q 0.11 tolerated(0.12) benign(0.094) TCGA-UY-A78K-01 X 16859633 16859633 A G TXLNG Missense_Mutation p.E444G 0.13 deleterious(0.01) benign(0.424) TCGA-UY-A78K-01 X 209800 209800 A G PLCXD1 Silent p.P216P 0.08 TCGA-UY-A78K-01 X 3592644 3592644 G A PRKX Silent p.I110I 0.23 TCGA-UY-A78K-01 X 41200823 41200824 GG - DDX3X Frame_Shift_Del p.G80Efs*3 0.11 TCGA-UY-A78K-01 X 54784821 54784821 G A ITIH6 Silent p.R562R 0.62 TCGA-UY-A78K-01 X 595435 595435 C A SHOX Missense_Mutation p.S120R 0.09 deleterious(0) probably_damaging(0.954) TCGA-UY-A78K-01 X 595436 595436 C A SHOX Missense_Mutation p.R121S 0.09 deleterious(0) probably_damaging(0.909) TCGA-UY-A78K-01 X 70330430 70330430 T A IL2RG Missense_Mutation p.Q126H 0.32 deleterious(0.04) benign(0.028) TCGA-UY-A78K-01 X 74641729 74641729 T A ZDHHC15 Missense_Mutation p.K278M 0.19 deleterious(0.01) benign(0.296) TCGA-UY-A78K-01 X 90690847 90690847 C T PABPC5 Missense_Mutation p.L91F 0.21 deleterious(0) probably_damaging(0.973) TCGA-UY-A78K-01 X 9682998 9682998 G A TBL1X Nonsense_Mutation p.W554* 0.13 TCGA-UY-A78K-01 Y 14958935 14958935 G A USP9Y Missense_Mutation p.D2278N 0.12 deleterious(0.01) benign(0.309) TCGA-UY-A78L-01 10 112653936 112653936 C A PDCD4 Missense_Mutation p.H360N 0.15 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 10 17147549 17147549 G C CUBN Silent p.L379L 0.38 TCGA-UY-A78L-01 10 20290841 20290841 C A PLXDC2 Missense_Mutation p.Q84K 0.47 deleterious(0.02) benign(0.176) TCGA-UY-A78L-01 10 27311576 27311576 C T ANKRD26 Missense_Mutation p.E1376K 0.08 tolerated(0.14) benign(0.022) TCGA-UY-A78L-01 10 38406653 38406653 C T ZNF37A Nonsense_Mutation p.Q192* 0.22 TCGA-UY-A78L-01 10 5789825 5789825 C T FAM208B Silent p.L1481L 0.15 TCGA-UY-A78L-01 10 68688159 68688159 G A LRRTM3 Silent p.L495L 0.35 TCGA-UY-A78L-01 10 7841097 7841097 C T ATP5C1 Missense_Mutation p.A123V 0.12 tolerated(0.26) benign(0.315) TCGA-UY-A78L-01 10 89692851 89692851 T C PTEN Missense_Mutation p.L112P 0.58 deleterious(0) probably_damaging(0.999) TCGA-UY-A78L-01 10 91479204 91479204 C G KIF20B Missense_Mutation p.S488C 0.27 tolerated(0.07) probably_damaging(0.997) TCGA-UY-A78L-01 10 96352226 96352226 C T HELLS Silent p.F642F 0.49 TCGA-UY-A78L-01 11 103052607 103052607 C T DYNC2H1 Silent p.L2157L 0.20 TCGA-UY-A78L-01 11 113283435 113283435 C T DRD2 Silent p.K327K 0.15 TCGA-UY-A78L-01 11 122928486 122928487 - G HSPA8 Frame_Shift_Ins p.S633Lfs*11 0.30 TCGA-UY-A78L-01 11 126333074 126333074 C T KIRREL3 Silent p.T240T 0.20 TCGA-UY-A78L-01 11 12951826 12951826 G C TEAD1 Missense_Mutation p.E374Q 0.14 deleterious(0.02) possibly_damaging(0.586) TCGA-UY-A78L-01 11 32460611 32460611 G C WT1 5'Flank 0.15 TCGA-UY-A78L-01 11 47315431 47315431 C T MADD Intron 0.22 TCGA-UY-A78L-01 11 47498979 47498979 T C CELF1 Splice_Site p.X281_splice 0.22 TCGA-UY-A78L-01 11 60229912 60229912 C T MS4A1 Missense_Mutation p.A22V 0.47 tolerated(0.43) benign(0.021) TCGA-UY-A78L-01 11 64434761 64434761 C T NRXN2 Missense_Mutation p.E587K 0.21 deleterious(0.04) benign(0.003) TCGA-UY-A78L-01 11 64537844 64537844 C A SF1 Silent p.G216G 0.15 TCGA-UY-A78L-01 11 674639 674639 G A DEAF1 Missense_Mutation p.A467V 0.17 tolerated(0.46) benign(0.169) TCGA-UY-A78L-01 11 70505935 70505935 C T SHANK2 Missense_Mutation p.E688K 0.20 deleterious(0) probably_damaging(0.999) TCGA-UY-A78L-01 11 82877286 82877286 C A PCF11 Silent p.I449I 0.24 TCGA-UY-A78L-01 12 117968788 117968788 C T KSR2 Missense_Mutation p.R587Q 0.29 tolerated(0.5) benign(0.225) TCGA-UY-A78L-01 12 123800103 123800103 C G SBNO1 Missense_Mutation p.E1014Q 0.14 deleterious(0) possibly_damaging(0.67) TCGA-UY-A78L-01 12 124123888 124123888 C T GTF2H3 Nonsense_Mutation p.Q31* 0.24 TCGA-UY-A78L-01 12 133196313 133196313 C T P2RX2 Nonsense_Mutation p.Q120* 0.24 TCGA-UY-A78L-01 12 43822517 43822517 C G ADAMTS20 Missense_Mutation p.C1192S 0.50 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 12 53294949 53294949 G C KRT8 Missense_Mutation p.I224M 0.24 deleterious(0.01) benign(0.382) TCGA-UY-A78L-01 12 54059071 54059071 G C ATP5G2 3'UTR 0.24 TCGA-UY-A78L-01 12 58335497 58335497 C A XRCC6BP1 Missense_Mutation p.P5T 0.46 deleterious_low_confidence(0.03) benign(0.07) TCGA-UY-A78L-01 13 101735522 101735522 T A NALCN Missense_Mutation p.Y1204F 0.12 deleterious(0.01) possibly_damaging(0.88) TCGA-UY-A78L-01 13 110817268 110817268 G C COL4A1 Missense_Mutation p.P1364R 0.67 probably_damaging(0.987) TCGA-UY-A78L-01 13 24200927 24200927 G A TNFRSF19 Silent p.P147P 0.71 TCGA-UY-A78L-01 13 27259998 27259998 G C WASF3 3'UTR 0.64 TCGA-UY-A78L-01 13 39451377 39451377 G A FREM2 Missense_Mutation p.E2890K 0.16 tolerated(0.12) benign(0.194) TCGA-UY-A78L-01 13 45983092 45983092 C T SLC25A30 Missense_Mutation p.R61K 0.17 tolerated(1) benign(0.003) TCGA-UY-A78L-01 13 49047527 49047530 GTGA - RB1 Splice_Site p.X840_splice 0.45 TCGA-UY-A78L-01 13 73539441 73539441 G C PIBF1 Missense_Mutation p.Q621H 0.07 tolerated(0.06) probably_damaging(0.994) TCGA-UY-A78L-01 14 101495970 101495970 C T MIR543 5'Flank 0.20 TCGA-UY-A78L-01 14 105413151 105413151 C T AHNAK2 Silent p.V2879V 0.07 TCGA-UY-A78L-01 14 22005046 22005046 G A SALL2 Nonsense_Mutation p.R4* 0.33 TCGA-UY-A78L-01 14 24785316 24785316 C G LTB4R Silent p.L153L 0.27 TCGA-UY-A78L-01 14 53177836 53177836 G A PSMC6 Silent p.L106L 0.21 TCGA-UY-A78L-01 14 56763420 56763420 C G PELI2 Missense_Mutation p.Q267E 0.14 tolerated(1) benign(0.275) TCGA-UY-A78L-01 14 63447854 63447854 G C KCNH5 Missense_Mutation p.F226L 0.15 tolerated(0.17) probably_damaging(0.978) TCGA-UY-A78L-01 14 65528024 65528024 C T FNTB Silent p.T436T 0.20 TCGA-UY-A78L-01 14 73002911 73002911 G A RGS6 Silent p.L432L 0.45 TCGA-UY-A78L-01 15 39893079 39893079 G C FSIP1 3'UTR 0.28 TCGA-UY-A78L-01 15 43441253 43441253 A G TMEM62 Missense_Mutation p.H257R 0.25 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 15 52356397 52356397 A G MAPK6 Missense_Mutation p.N456D 0.25 deleterious(0.02) benign(0.121) TCGA-UY-A78L-01 15 59191728 59191728 T C SLTM Missense_Mutation p.K333R 0.17 deleterious(0.01) unknown(0) TCGA-UY-A78L-01 15 59368279 59368279 C T RNF111 Nonsense_Mutation p.Q605* 0.25 TCGA-UY-A78L-01 15 65946369 65946369 C G SLC24A1 Missense_Mutation p.I1084M 0.24 possibly_damaging(0.765) TCGA-UY-A78L-01 15 77348409 77348409 G A TSPAN3 Silent p.A84A 0.35 TCGA-UY-A78L-01 15 86228025 86228025 C T AKAP13 Missense_Mutation p.S1741F 0.15 tolerated(1) benign(0.001) TCGA-UY-A78L-01 16 15129997 15129997 C T PDXDC1 Silent p.L744L 0.39 TCGA-UY-A78L-01 16 1798271 1798271 G A MAPK8IP3 Missense_Mutation p.D340N 0.23 tolerated(0.05) possibly_damaging(0.901) TCGA-UY-A78L-01 16 1810496 1810496 G C MAPK8IP3 Missense_Mutation p.E473Q 0.22 tolerated(0.21) benign(0.177) TCGA-UY-A78L-01 16 21069457 21069457 T C DNAH3 Missense_Mutation p.I1292V 0.33 tolerated(0.26) benign(0.027) TCGA-UY-A78L-01 16 21261824 21261824 G T ANKS4B Nonsense_Mutation p.E313* 0.13 TCGA-UY-A78L-01 16 28181134 28181134 G A XPO6 Missense_Mutation p.R168W 0.21 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 16 3014488 3014488 C G KREMEN2 5'UTR 0.34 TCGA-UY-A78L-01 16 30748804 30748804 C G SRCAP Missense_Mutation p.I2481M 0.27 unknown(0) TCGA-UY-A78L-01 16 3100093 3100093 C T MMP25 Missense_Mutation p.R106C 0.18 deleterious(0) probably_damaging(0.964) TCGA-UY-A78L-01 16 3100371 3100371 C T MMP25 Missense_Mutation p.S162F 0.14 tolerated(0.06) benign(0.086) TCGA-UY-A78L-01 16 31499002 31499002 C G SLC5A2 Silent p.P269P 0.12 TCGA-UY-A78L-01 16 48162640 48162640 G C ABCC12 Silent p.L415L 0.46 TCGA-UY-A78L-01 16 4934524 4934524 C G PPL Missense_Mutation p.E1378Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-UY-A78L-01 17 10535959 10535959 G A MYH3 Missense_Mutation p.T1597I 0.58 deleterious(0) benign(0.213) TCGA-UY-A78L-01 17 15995343 15995343 A - NCOR1 Frame_Shift_Del p.I950Mfs*5 0.39 TCGA-UY-A78L-01 17 18181344 18181344 G A TOP3A Silent p.V824V 0.15 TCGA-UY-A78L-01 17 26653744 26653744 C T TMEM97 Silent p.L152L 0.30 TCGA-UY-A78L-01 17 27002171 27002171 G C SUPT6H Missense_Mutation p.E177Q 0.12 tolerated(0.05) unknown(0) TCGA-UY-A78L-01 17 31618767 31618767 C G ASIC2 Missense_Mutation p.E123Q 0.43 tolerated(0.54) possibly_damaging(0.851) TCGA-UY-A78L-01 17 57057840 57057840 C T PPM1E Silent p.L572L 0.17 TCGA-UY-A78L-01 17 70119832 70119832 G A SOX9 Silent p.L278L 0.11 TCGA-UY-A78L-01 17 73897805 73897805 C T MRPL38 Silent p.V193V 0.18 TCGA-UY-A78L-01 17 74465350 74465350 G A AANAT Missense_Mutation p.E132K 0.23 tolerated(0.07) probably_damaging(0.967) TCGA-UY-A78L-01 17 74732291 74732291 C T SRSF2 Silent p.S206S 0.09 TCGA-UY-A78L-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.62 deleterious(0) probably_damaging(0.985) TCGA-UY-A78L-01 17 78324137 78324137 C T RNF213 Silent p.L3375L 0.11 TCGA-UY-A78L-01 17 78796025 78796025 G T RPTOR Missense_Mutation p.R305S 0.06 deleterious(0) probably_damaging(0.996) TCGA-UY-A78L-01 17 79976996 79976996 C T STRA13 3'UTR 0.25 TCGA-UY-A78L-01 17 80422294 80422294 G A NARF Silent p.L80L 0.35 TCGA-UY-A78L-01 18 12325866 12325866 G A TUBB6 Missense_Mutation p.G360S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-UY-A78L-01 18 9134252 9134252 G C NDUFV2 Missense_Mutation p.G242A 0.09 deleterious(0.04) possibly_damaging(0.899) TCGA-UY-A78L-01 19 12638575 12638575 G A ZNF564 Missense_Mutation p.S116L 0.17 deleterious(0.05) benign(0.045) TCGA-UY-A78L-01 19 12691184 12691184 A G ZNF490 3'UTR 0.28 TCGA-UY-A78L-01 19 1466155 1466155 C T APC2 Missense_Mutation p.S952L 0.67 benign(0.051) TCGA-UY-A78L-01 19 36014382 36014382 A G SBSN 3'UTR 0.14 TCGA-UY-A78L-01 19 46332275 46332275 G A SYMPK Silent p.L646L 0.34 TCGA-UY-A78L-01 19 47572422 47572422 C T ZC3H4 Silent p.Q775Q 0.21 TCGA-UY-A78L-01 19 51518712 51518712 C G KLK10 Missense_Mutation p.M213I 0.17 deleterious(0) probably_damaging(0.994) TCGA-UY-A78L-01 19 54418637 54418637 C - CACNG7 Frame_Shift_Del p.F103Sfs*59 0.29 TCGA-UY-A78L-01 19 54676798 54676798 C G TMC4 Silent p.P5P 0.17 TCGA-UY-A78L-01 19 5763290 5763290 G A CATSPERD Missense_Mutation p.D498N 0.16 deleterious(0.03) probably_damaging(0.96) TCGA-UY-A78L-01 19 57642258 57642258 G C USP29 Missense_Mutation p.E739Q 0.32 tolerated(0.5) possibly_damaging(0.769) TCGA-UY-A78L-01 19 808706 808706 C T PTBP1 Silent p.S469S 0.46 TCGA-UY-A78L-01 19 9067696 9067696 C G MUC16 Missense_Mutation p.E6584Q 0.23 unknown(0) TCGA-UY-A78L-01 1 100340960 100340960 G A AGL Missense_Mutation p.G411D 0.08 tolerated(0.73) benign(0.001) TCGA-UY-A78L-01 1 111061107 111061107 G C KCNA10 Silent p.L101L 0.24 TCGA-UY-A78L-01 1 114524297 114524297 G A OLFML3 Missense_Mutation p.R376H 0.14 tolerated(0.34) probably_damaging(0.928) TCGA-UY-A78L-01 1 12381879 12381879 G T VPS13D Missense_Mutation p.R2521L 0.33 benign(0.187) TCGA-UY-A78L-01 1 145473806 145473806 C G ANKRD34A Missense_Mutation p.L160V 0.11 deleterious(0) probably_damaging(0.981) TCGA-UY-A78L-01 1 145580263 145580263 C T PIAS3 Nonsense_Mutation p.R249* 0.34 TCGA-UY-A78L-01 1 149857787 149857787 G A HIST2H2BE 3'UTR 0.32 TCGA-UY-A78L-01 1 151109452 151109452 G A SEMA6C Silent p.L285L 0.12 TCGA-UY-A78L-01 1 152081456 152081456 C T TCHH Missense_Mutation p.D1413N 0.13 unknown(0) TCGA-UY-A78L-01 1 152278453 152278453 G T FLG Missense_Mutation p.A2970E 0.24 benign(0.002) TCGA-UY-A78L-01 1 153507119 153507119 G C S100A6 3'UTR 0.15 TCGA-UY-A78L-01 1 153902856 153902856 C T DENND4B Missense_Mutation p.E1470K 0.19 tolerated(0.1) probably_damaging(0.968) TCGA-UY-A78L-01 1 156212041 156212041 C T BGLAP Missense_Mutation p.L7F 0.18 deleterious(0.03) unknown(0) TCGA-UY-A78L-01 1 158151868 158151868 G A CD1D Silent p.G125G 0.06 TCGA-UY-A78L-01 1 161070565 161070565 G A PFDN2 Missense_Mutation p.R125C 0.05 deleterious(0) probably_damaging(0.985) TCGA-UY-A78L-01 1 179821905 179821905 A G TOR1AIP2 5'UTR 0.21 TCGA-UY-A78L-01 1 185269663 185269663 C T IVNS1ABP Missense_Mutation p.R383Q 0.14 deleterious(0.01) probably_damaging(0.957) TCGA-UY-A78L-01 1 202574758 202574758 T C SYT2 Missense_Mutation p.K48R 0.29 tolerated(0.09) benign(0.292) TCGA-UY-A78L-01 1 207642005 207642005 G A CR2 Silent p.K193K 0.14 TCGA-UY-A78L-01 1 212245552 212245552 G A DTL Nonsense_Mutation p.W344* 0.24 TCGA-UY-A78L-01 1 240374455 240374455 G C FMN2 Missense_Mutation p.E1329Q 0.12 probably_damaging(0.953) TCGA-UY-A78L-01 1 24124220 24124220 C T GALE Missense_Mutation p.E165K 0.22 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 1 26595074 26595074 G A CEP85 Missense_Mutation p.R481H 0.22 deleterious(0) probably_damaging(0.997) TCGA-UY-A78L-01 1 27189676 27189676 C T SFN 5'UTR 0.42 TCGA-UY-A78L-01 1 27238458 27238458 G A NR0B2 Missense_Mutation p.L218F 0.19 tolerated(0.17) probably_damaging(0.999) TCGA-UY-A78L-01 1 28907692 28907692 C - TRNAU1AP 3'Flank 0.38 TCGA-UY-A78L-01 1 35227215 35227215 G C GJB4 Silent p.L120L 0.32 TCGA-UY-A78L-01 1 46086493 46086493 C G CCDC17 Missense_Mutation p.E538Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-UY-A78L-01 1 46739349 46739349 G A RAD54L Missense_Mutation p.D514N 0.38 deleterious(0) probably_damaging(0.998) TCGA-UY-A78L-01 1 7826553 7826553 G A CAMTA1 3'UTR 0.17 TCGA-UY-A78L-01 20 33587435 33587435 G A MYH7B Silent p.E1576E 0.16 TCGA-UY-A78L-01 20 3781979 3781979 G C CDC25B Missense_Mutation p.E262Q 0.13 tolerated(0.52) benign(0.009) TCGA-UY-A78L-01 20 3782967 3782967 G C CDC25B Missense_Mutation p.E380Q 0.14 deleterious(0.05) benign(0.362) TCGA-UY-A78L-01 20 45221095 45221095 G A SLC13A3 Silent p.L290L 0.07 TCGA-UY-A78L-01 20 5294562 5294562 C T PROKR2 Missense_Mutation p.D152N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A78L-01 20 54974087 54974087 A T CSTF1 Missense_Mutation p.Q237L 0.32 tolerated(0.15) benign(0.08) TCGA-UY-A78L-01 20 60881753 60881753 C A ADRM1 Silent p.L168L 0.24 TCGA-UY-A78L-01 20 61870805 61870805 G A BIRC7 Missense_Mutation p.E249K 0.35 deleterious(0.02) probably_damaging(0.964) TCGA-UY-A78L-01 21 38444982 38444982 C G PIGP 5'UTR 0.25 TCGA-UY-A78L-01 21 47420265 47420265 C T COL6A1 Silent p.I599I 0.13 TCGA-UY-A78L-01 22 19966493 19966493 C T ARVCF Missense_Mutation p.E503K 0.28 tolerated(0.15) benign(0.038) TCGA-UY-A78L-01 22 24038808 24038808 G A RGL4 Missense_Mutation p.S365N 0.21 tolerated(0.19) benign(0.044) TCGA-UY-A78L-01 22 24087015 24087015 G C ZNF70 Missense_Mutation p.Q105E 0.35 tolerated(0.06) benign(0.001) TCGA-UY-A78L-01 22 24087105 24087105 G A ZNF70 Nonsense_Mutation p.Q75* 0.34 TCGA-UY-A78L-01 22 32498169 32498169 C G SLC5A1 Missense_Mutation p.S537C 0.10 tolerated(0.09) benign(0.013) TCGA-UY-A78L-01 22 38476986 38476986 G A SLC16A8 Silent p.F353F 0.25 TCGA-UY-A78L-01 22 39381968 39381968 C G APOBEC3B Missense_Mutation p.S109C 0.12 deleterious(0.01) benign(0.16) TCGA-UY-A78L-01 2 107029618 107029618 C G RGPD3 Missense_Mutation p.E1730Q 0.15 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-UY-A78L-01 2 109087004 109087004 G A GCC2 Missense_Mutation p.E407K 0.61 deleterious(0.01) benign(0.359) TCGA-UY-A78L-01 2 112608431 112608431 T G ANAPC1 Silent p.T524T 0.51 TCGA-UY-A78L-01 2 112942910 112942910 C T FBLN7 Missense_Mutation p.S314F 0.41 deleterious(0.01) possibly_damaging(0.521) TCGA-UY-A78L-01 2 11312124 11312124 G A PQLC3 Missense_Mutation p.G143E 0.23 tolerated(0.28) benign(0.016) TCGA-UY-A78L-01 2 149803434 149803434 G A KIF5C Missense_Mutation p.R204K 0.54 deleterious(0.02) possibly_damaging(0.878) TCGA-UY-A78L-01 2 1544363 1544363 C T TPO Intron 0.17 TCGA-UY-A78L-01 2 173916487 173916487 C G RAPGEF4 Missense_Mutation p.R1010G 0.10 deleterious(0) probably_damaging(0.998) TCGA-UY-A78L-01 2 177016641 177016641 G C HOXD4 Missense_Mutation p.E94Q 0.27 tolerated(0.88) possibly_damaging(0.767) TCGA-UY-A78L-01 2 179588222 179588222 G A TTN Missense_Mutation p.S7202F 0.14 TCGA-UY-A78L-01 2 179639084 179639084 C A TTN Missense_Mutation p.D2303Y 0.19 TCGA-UY-A78L-01 2 190531514 190531514 C T ASNSD1 Missense_Mutation p.S219L 0.14 tolerated(0.1) benign(0.009) TCGA-UY-A78L-01 2 201722595 201722595 C G CLK1 Missense_Mutation p.Q268H 0.30 tolerated(0.17) benign(0.217) TCGA-UY-A78L-01 2 201722768 201722768 C G CLK1 Missense_Mutation p.R240T 0.22 deleterious(0.03) probably_damaging(0.941) TCGA-UY-A78L-01 2 21238118 21238118 C G APOB Missense_Mutation p.E1175Q 0.09 possibly_damaging(0.782) TCGA-UY-A78L-01 2 231380326 231380326 G A SP100 Intron 0.24 TCGA-UY-A78L-01 2 33745693 33745693 G A RASGRP3 Missense_Mutation p.E104K 0.18 tolerated(0.19) benign(0.254) TCGA-UY-A78L-01 2 70901855 70901855 C G ADD2 Missense_Mutation p.E566Q 0.15 tolerated(0.07) probably_damaging(0.974) TCGA-UY-A78L-01 2 74595869 74595869 G A DCTN1 Missense_Mutation p.R614C 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78L-01 3 112992091 112992091 C G BOC Silent p.L379L 0.20 TCGA-UY-A78L-01 3 139077618 139077618 C G COPB2 Missense_Mutation p.D841H 0.06 tolerated(0.13) benign(0.081) TCGA-UY-A78L-01 3 139077643 139077643 C G COPB2 Missense_Mutation p.E832D 0.09 tolerated(0.47) benign(0.002) TCGA-UY-A78L-01 3 140178521 140178521 C G CLSTN2 Missense_Mutation p.Q378E 0.11 tolerated(0.28) benign(0.065) TCGA-UY-A78L-01 3 148459512 148459512 G A AGTR1 Silent p.K230K 0.12 TCGA-UY-A78L-01 3 169540300 169540300 G A LRRIQ4 Silent p.E197E 0.12 TCGA-UY-A78L-01 3 170078952 170078952 C A SKIL Missense_Mutation p.P278H 0.22 deleterious(0) probably_damaging(0.995) TCGA-UY-A78L-01 3 182788831 182788831 G A MCCC1 Silent p.F239F 0.19 TCGA-UY-A78L-01 3 182988793 182988793 C T B3GNT5 3'UTR 0.18 TCGA-UY-A78L-01 3 184107221 184107221 G A CHRD 3'UTR 0.22 TCGA-UY-A78L-01 3 186507803 186507803 G A RFC4 Silent p.I349I 0.14 TCGA-UY-A78L-01 3 50131152 50131152 G A RBM5 Splice_Site p.X62_splice 0.38 TCGA-UY-A78L-01 3 51440609 51440609 G A VPRBP Missense_Mutation p.A1049V 0.16 tolerated_low_confidence(0.3) unknown(0) TCGA-UY-A78L-01 3 52257699 52257699 G A TLR9 Silent p.L365L 0.42 TCGA-UY-A78L-01 3 58149071 58149071 C G FLNB Intron 0.39 TCGA-UY-A78L-01 3 65344796 65344796 C G MAGI1 Intron 0.15 TCGA-UY-A78L-01 3 66436578 66436578 T A LRIG1 Missense_Mutation p.N539I 0.44 deleterious(0) possibly_damaging(0.492) TCGA-UY-A78L-01 3 97868604 97868604 C T OR5H14 Silent p.A125A 0.12 TCGA-UY-A78L-01 4 104510835 104510835 G A TACR3 3'UTR 0.22 TCGA-UY-A78L-01 4 126242275 126242275 G T FAT4 Missense_Mutation p.G1570V 0.62 probably_damaging(1) TCGA-UY-A78L-01 4 146686228 146686228 C G ZNF827 Missense_Mutation p.E1048Q 0.22 tolerated(0.1) probably_damaging(0.997) TCGA-UY-A78L-01 4 148463668 148463668 G A EDNRA Silent p.L394L 0.18 TCGA-UY-A78L-01 4 151504349 151504349 G C MAB21L2 Missense_Mutation p.L56F 0.30 tolerated(0.06) probably_damaging(0.986) TCGA-UY-A78L-01 4 156136118 156136118 G C NPY2R Missense_Mutation p.E343Q 0.58 tolerated(0.36) benign(0.003) TCGA-UY-A78L-01 4 3430192 3430192 C T RGS12 Intron 0.33 TCGA-UY-A78L-01 4 39083642 39083642 C T KLHL5 Nonsense_Mutation p.Q301* 0.16 TCGA-UY-A78L-01 4 39851203 39851203 C G PDS5A Missense_Mutation p.K1052N 0.58 tolerated(0.28) probably_damaging(0.998) TCGA-UY-A78L-01 4 46043072 46043072 C A GABRG1 Missense_Mutation p.R444I 0.17 deleterious(0) probably_damaging(0.993) TCGA-UY-A78L-01 4 47896226 47896226 C T NFXL1 Missense_Mutation p.D475N 0.17 tolerated(0.35) benign(0.034) TCGA-UY-A78L-01 4 5690922 5690922 G C EVC2 Missense_Mutation p.S223W 0.22 deleterious(0.01) possibly_damaging(0.871) TCGA-UY-A78L-01 4 71114802 71114802 G C CSN3 Missense_Mutation p.G59R 0.24 tolerated(0.41) benign(0) TCGA-UY-A78L-01 4 89415392 89415392 A G HERC5 Missense_Mutation p.N785S 0.09 deleterious(0.01) possibly_damaging(0.755) TCGA-UY-A78L-01 5 1063986 1063986 G C SLC12A7 Missense_Mutation p.I904M 0.04 deleterious(0.02) possibly_damaging(0.617) TCGA-UY-A78L-01 5 118507480 118507480 C G DMXL1 Nonsense_Mutation p.S2166* 0.20 TCGA-UY-A78L-01 5 13862767 13862767 G A DNAH5 Silent p.F1562F 0.05 TCGA-UY-A78L-01 5 140794341 140794341 G A PCDHGA10 Silent p.Q533Q 0.33 TCGA-UY-A78L-01 5 1463832 1463832 G A LPCAT1 Silent p.F513F 0.04 TCGA-UY-A78L-01 5 149915293 149915293 C T NDST1 Missense_Mutation p.A428V 0.19 deleterious(0) probably_damaging(0.982) TCGA-UY-A78L-01 5 149918799 149918799 C A NDST1 Silent p.R483R 0.16 TCGA-UY-A78L-01 5 160033891 160033891 T A ATP10B Missense_Mutation p.K1014M 0.14 deleterious(0) probably_damaging(0.98) TCGA-UY-A78L-01 5 160033898 160033898 C G ATP10B Missense_Mutation p.E1012Q 0.15 tolerated(0.61) possibly_damaging(0.531) TCGA-UY-A78L-01 5 176942243 176942243 C T DDX41 Silent p.L196L 0.07 TCGA-UY-A78L-01 5 179555610 179555610 C T RASGEF1C Missense_Mutation p.A147T 0.12 tolerated(0.97) benign(0.001) TCGA-UY-A78L-01 5 180661766 180661766 C G TRIM41 Silent p.L628L 0.06 TCGA-UY-A78L-01 5 23526339 23526339 C T PRDM9 Intron 0.14 TCGA-UY-A78L-01 5 2749162 2749162 G A IRX2 Silent p.I220I 0.15 TCGA-UY-A78L-01 5 31317488 31317488 C G CDH6 Missense_Mutation p.Q507E 0.04 tolerated(0.06) benign(0.098) TCGA-UY-A78L-01 5 34823814 34823814 G A RAI14 Missense_Mutation p.A626T 0.07 deleterious(0.04) benign(0.004) TCGA-UY-A78L-01 5 43649344 43649344 C G NNT Missense_Mutation p.H514D 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A78L-01 5 5242217 5242217 C T ADAMTS16 Missense_Mutation p.R859C 0.06 deleterious(0) possibly_damaging(0.696) TCGA-UY-A78L-01 5 55075822 55075822 C G DDX4 Nonsense_Mutation p.S142* 0.36 TCGA-UY-A78L-01 5 640714 640714 G C CEP72 Missense_Mutation p.E512Q 0.05 deleterious(0.03) possibly_damaging(0.666) TCGA-UY-A78L-01 6 106969025 106969025 C T AIM1 Silent p.F906F 0.16 TCGA-UY-A78L-01 6 123892118 123892118 G C TRDN Nonsense_Mutation p.S61* 0.30 TCGA-UY-A78L-01 6 138196164 138196164 G A TNFAIP3 Missense_Mutation p.D160N 0.20 tolerated(0.17) benign(0.067) TCGA-UY-A78L-01 6 26393220 26393220 A G BTN2A2 3'UTR 0.22 TCGA-UY-A78L-01 6 26448522 26448522 G C BTN3A3 Silent p.G254G 0.10 TCGA-UY-A78L-01 6 29342070 29342070 G C OR12D3 3'UTR 0.15 TCGA-UY-A78L-01 6 29342313 29342313 T C OR12D3 Missense_Mutation p.Y251C 0.18 deleterious(0) possibly_damaging(0.624) TCGA-UY-A78L-01 6 30314549 30314549 G A TRIM39-RPP21 Missense_Mutation p.E404K 0.15 deleterious_low_confidence(0) benign(0.292) TCGA-UY-A78L-01 6 3105811 3105811 G A RIPK1 Missense_Mutation p.E368K 0.17 tolerated(0.05) benign(0.206) TCGA-UY-A78L-01 6 31630141 31630141 G A GPANK1 Missense_Mutation p.R325W 0.13 deleterious(0) possibly_damaging(0.817) TCGA-UY-A78L-01 6 33246332 33246332 G A B3GALT4 Silent p.%3D 0.17 TCGA-UY-A78L-01 6 34499486 34499486 G A PACSIN1 Missense_Mutation p.D383N 0.15 tolerated(0.22) benign(0.068) TCGA-UY-A78L-01 6 36652129 36652136 GAGGCCGG - CDKN1A Frame_Shift_Del p.G85* 0.27 TCGA-UY-A78L-01 6 43014801 43014801 C T CUL7 Silent p.V822V 0.39 TCGA-UY-A78L-01 6 43163948 43163948 G C CUL9 Missense_Mutation p.E844Q 0.13 tolerated(0.12) benign(0.135) TCGA-UY-A78L-01 6 49701492 49701492 C A CRISP3 Missense_Mutation p.W139L 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-UY-A78L-01 6 70935673 70935673 C A COL9A1 Missense_Mutation p.R848I 0.34 probably_damaging(0.987) TCGA-UY-A78L-01 6 73905045 73905045 C T KCNQ5 Silent p.L922L 0.42 TCGA-UY-A78L-01 6 74466381 74466381 C G CD109 Missense_Mutation p.Q217E 0.17 deleterious(0.02) benign(0.049) TCGA-UY-A78L-01 6 83855310 83855310 G A DOPEY1 Missense_Mutation p.R1870K 0.48 tolerated(0.52) benign(0.021) TCGA-UY-A78L-01 7 100007089 100007089 G A ZCWPW1 Missense_Mutation p.S277L 0.45 deleterious(0.01) probably_damaging(0.964) TCGA-UY-A78L-01 7 100469339 100469339 C A TRIP6 Missense_Mutation p.H392N 0.20 deleterious(0) possibly_damaging(0.887) TCGA-UY-A78L-01 7 107542259 107542259 C T DLD Silent p.F65F 0.10 TCGA-UY-A78L-01 7 107880462 107880462 C G NRCAM Missense_Mutation p.R16T 0.16 tolerated(0.24) benign(0.083) TCGA-UY-A78L-01 7 126746602 126746602 C T GRM8 Silent p.G225G 0.17 TCGA-UY-A78L-01 7 128454757 128454757 G - CCDC136 Frame_Shift_Del p.R945Gfs*4 0.11 TCGA-UY-A78L-01 7 136936138 136936138 G T PTN Missense_Mutation p.A97E 0.10 deleterious(0) possibly_damaging(0.871) TCGA-UY-A78L-01 7 139168194 139168194 C T KLRG2 Silent p.S65S 0.19 TCGA-UY-A78L-01 7 143701739 143701739 C G OR6B1 Missense_Mutation p.S217C 0.22 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 7 143771640 143771640 G C OR2A25 Missense_Mutation p.E110Q 0.11 deleterious(0) possibly_damaging(0.858) TCGA-UY-A78L-01 7 144101655 144101655 G C NOBOX Silent p.L68L 0.37 TCGA-UY-A78L-01 7 37780414 37780414 G T GPR141 Missense_Mutation p.W140L 0.10 deleterious(0) probably_damaging(1) TCGA-UY-A78L-01 7 44047284 44047284 C T SPDYE1 Intron 0.57 TCGA-UY-A78L-01 7 5781338 5781338 C G RNF216 Missense_Mutation p.E104Q 0.24 tolerated_low_confidence(0.28) probably_damaging(0.994) TCGA-UY-A78L-01 7 73480280 73480280 C T ELN Missense_Mutation p.A680V 0.43 unknown(0) TCGA-UY-A78L-01 7 7646800 7646800 C T MIOS 3'UTR 0.53 TCGA-UY-A78L-01 7 99798560 99798560 C T STAG3 Missense_Mutation p.R677C 0.08 deleterious(0) benign(0.049) TCGA-UY-A78L-01 8 145095927 145095927 G A SPATC1 Missense_Mutation p.E409K 0.48 deleterious(0.03) probably_damaging(0.922) TCGA-UY-A78L-01 8 28420600 28420600 G C FZD3 3'UTR 0.17 TCGA-UY-A78L-01 8 61654172 61654172 C G CHD7 Missense_Mutation p.Q61E 0.22 benign(0.042) TCGA-UY-A78L-01 8 68044210 68044210 G C CSPP1 Silent p.L569L 0.17 TCGA-UY-A78L-01 8 68255549 68255549 G A ARFGEF1 5'UTR 0.20 TCGA-UY-A78L-01 8 77776406 77776406 C T ZFHX4 Missense_Mutation p.H3486Y 0.15 probably_damaging(0.946) TCGA-UY-A78L-01 8 82371425 82371425 G A FABP9 Missense_Mutation p.T74I 0.13 tolerated(0.09) benign(0.176) TCGA-UY-A78L-01 9 123907177 123907177 C T CNTRL Silent p.L1036L 0.17 TCGA-UY-A78L-01 9 12775741 12775741 C T LURAP1L Silent p.L9L 0.31 TCGA-UY-A78L-01 9 136337290 136337290 G A SLC2A6 Silent p.F459F 0.15 TCGA-UY-A78L-01 9 139945802 139945802 G T ENTPD2 Nonsense_Mutation p.S136* 0.33 TCGA-UY-A78L-01 9 21333031 21333031 G C KLHL9 Missense_Mutation p.L610V 0.21 tolerated(0.22) possibly_damaging(0.599) TCGA-UY-A78L-01 9 35077366 35077366 G A FANCG Silent p.L181L 0.20 TCGA-UY-A78L-01 9 37737217 37737217 C T FRMPD1 Missense_Mutation p.A509V 0.48 tolerated(1) benign(0) TCGA-UY-A78L-01 9 84532448 84532448 G A SPATA31D5P RNA 0.14 TCGA-UY-A78L-01 X 119509292 119509292 G T ATP1B4 Missense_Mutation p.D210Y 0.07 deleterious(0) probably_damaging(0.992) TCGA-UY-A78L-01 X 135767973 135767973 G C ARHGEF6 Missense_Mutation p.Q419E 0.26 tolerated(0.09) benign(0.102) TCGA-UY-A78L-01 X 138864738 138864738 C T ATP11C Missense_Mutation p.M643I 0.59 deleterious(0.01) benign(0.141) TCGA-UY-A78L-01 X 32503183 32503183 G C DMD Missense_Mutation p.Q886E 0.19 benign(0.34) TCGA-UY-A78L-01 X 6452067 6452067 G A VCX3A Missense_Mutation p.P94S 0.26 deleterious(0.01) unknown(0) TCGA-UY-A78L-01 X 70389990 70389990 C G NLGN3 3'UTR 0.11 TCGA-UY-A78L-01 X 76778781 76778781 C G ATRX Missense_Mutation p.L2266F 0.68 probably_damaging(0.999) TCGA-UY-A78L-01 X 77254178 77254178 G A ATP7A Missense_Mutation p.E514K 0.05 tolerated(0.81) benign(0.232) TCGA-UY-A78L-01 X 91132287 91132287 G A PCDH11X Missense_Mutation p.D350N 0.53 deleterious(0.01) probably_damaging(1) TCGA-UY-A78M-01 10 30900895 30900895 C A LYZL2 Nonsense_Mutation p.E192* 0.08 TCGA-UY-A78M-01 10 76990693 76990693 G A VDAC2 Silent p.K292K 0.27 TCGA-UY-A78M-01 10 8006708 8006708 G C TAF3 Missense_Mutation p.G412A 0.32 deleterious(0) probably_damaging(0.914) TCGA-UY-A78M-01 10 96043642 96043642 G A PLCE1 Missense_Mutation p.D1631N 0.35 tolerated(0.1) possibly_damaging(0.694) TCGA-UY-A78M-01 11 101984957 101984957 G A YAP1 Missense_Mutation p.G135E 0.46 tolerated(0.1) benign(0.008) TCGA-UY-A78M-01 11 1102508 1102508 C T MUC2 Missense_Mutation p.T2631M 0.53 unknown(0) TCGA-UY-A78M-01 11 113679872 113679872 C A USP28 Nonsense_Mutation p.E693* 0.22 TCGA-UY-A78M-01 11 18194980 18194980 C T MRGPRX4 Silent p.N59N 0.13 TCGA-UY-A78M-01 11 48285684 48285684 C G OR4X1 Missense_Mutation p.S91C 0.28 deleterious(0) probably_damaging(0.971) TCGA-UY-A78M-01 11 50003254 50003254 T A OR4C12 Missense_Mutation p.T262S 0.52 tolerated_low_confidence(0.12) possibly_damaging(0.789) TCGA-UY-A78M-01 11 55433385 55433385 T A OR4C6 Missense_Mutation p.F248Y 0.17 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-UY-A78M-01 11 7818490 7818490 G A OR5P2 5'UTR 0.11 TCGA-UY-A78M-01 11 8947187 8947187 C T C11orf16 Missense_Mutation p.E343K 0.47 tolerated(0.06) benign(0.311) TCGA-UY-A78M-01 11 92531638 92531639 - A FAT3 Frame_Shift_Ins p.F1823Vfs*20 0.25 TCGA-UY-A78M-01 12 102108380 102108380 G A CHPT1 Missense_Mutation p.A174T 0.26 deleterious(0) probably_damaging(1) TCGA-UY-A78M-01 12 122962433 122962433 C T ZCCHC8 Missense_Mutation p.E434K 0.21 tolerated(0.15) benign(0.031) TCGA-UY-A78M-01 12 122962440 122962440 C T ZCCHC8 Silent p.Q431Q 0.20 TCGA-UY-A78M-01 12 25311496 25311496 C T CASC1 Silent p.E36E 0.27 TCGA-UY-A78M-01 12 49444304 49444304 G A KMT2D Nonsense_Mutation p.Q1023* 0.31 TCGA-UY-A78M-01 12 57863379 57863379 C G GLI1 Missense_Mutation p.L492V 0.43 tolerated(0.12) probably_damaging(0.992) TCGA-UY-A78M-01 12 72278800 72278800 G A TBC1D15 Missense_Mutation p.E185K 0.39 tolerated(0.23) benign(0.259) TCGA-UY-A78M-01 12 8375290 8375290 C G FAM90A1 Missense_Mutation p.D175H 0.21 deleterious(0.01) benign(0.048) TCGA-UY-A78M-01 13 113219481 113219481 G A TUBGCP3 Nonsense_Mutation p.R66* 0.10 TCGA-UY-A78M-01 13 28519523 28519523 G A ATP5EP2 Missense_Mutation p.V43I 0.43 tolerated(0.49) benign(0.001) TCGA-UY-A78M-01 13 95034781 95034781 C T GPC6 Silent p.C422C 0.33 TCGA-UY-A78M-01 14 21967260 21967260 G T METTL3 Missense_Mutation p.P514T 0.44 deleterious(0) probably_damaging(1) TCGA-UY-A78M-01 14 24608566 24608566 C T EMC9 Intron 0.48 TCGA-UY-A78M-01 14 34998597 34998597 C T EAPP Missense_Mutation p.R146K 0.57 tolerated(0.19) benign(0.019) TCGA-UY-A78M-01 14 58862762 58862762 C G TOMM20L Silent p.L29L 0.63 TCGA-UY-A78M-01 15 30925721 30925721 G C ARHGAP11B Missense_Mutation p.E77Q 0.63 tolerated(0.35) benign(0.12) TCGA-UY-A78M-01 15 58938273 58938273 C T ADAM10 Missense_Mutation p.R239Q 0.38 deleterious(0.04) benign(0.16) TCGA-UY-A78M-01 15 68119375 68119375 C T SKOR1 Silent p.F510F 0.09 TCGA-UY-A78M-01 15 69733151 69733151 C T KIF23 Silent p.L704L 0.40 TCGA-UY-A78M-01 15 75500446 75500446 C T C15orf39 Missense_Mutation p.S686F 0.41 deleterious(0.02) unknown(0) TCGA-UY-A78M-01 15 75932210 75932210 G A IMP3 Silent p.F100F 0.36 TCGA-UY-A78M-01 15 79323808 79323808 G A RASGRF1 Missense_Mutation p.T399M 0.48 deleterious(0) probably_damaging(0.994) TCGA-UY-A78M-01 15 86702242 86702242 G A AGBL1 Missense_Mutation p.R112H 0.16 tolerated(1) benign(0.002) TCGA-UY-A78M-01 16 20442361 20442361 C T ACSM5 Missense_Mutation p.S391F 0.27 deleterious(0.04) possibly_damaging(0.874) TCGA-UY-A78M-01 16 2205060 2205060 C T TRAF7 5'Flank 0.23 TCGA-UY-A78M-01 16 23535547 23535547 A G EARS2 3'UTR 0.38 TCGA-UY-A78M-01 16 46766443 46766443 C T MYLK3 Missense_Mutation p.R380H 0.22 tolerated(0.21) benign(0) TCGA-UY-A78M-01 16 50402043 50402043 C A BRD7 Missense_Mutation p.Q72H 0.17 tolerated(0.18) possibly_damaging(0.795) TCGA-UY-A78M-01 16 50402062 50402062 C G BRD7 Missense_Mutation p.R66T 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-UY-A78M-01 16 74452140 74452140 G A CLEC18B Silent p.I91I 0.26 TCGA-UY-A78M-01 16 77850946 77850946 A G VAT1L Missense_Mutation p.E121G 0.09 deleterious(0.02) possibly_damaging(0.61) TCGA-UY-A78M-01 17 27958638 27958638 C G SSH2 Missense_Mutation p.E1165Q 0.42 tolerated_low_confidence(0.19) benign(0.002) TCGA-UY-A78M-01 17 28405333 28405333 C A EFCAB5 Silent p.L946L 0.30 TCGA-UY-A78M-01 17 28405376 28405376 C G EFCAB5 Missense_Mutation p.L961V 0.36 deleterious(0) probably_damaging(0.929) TCGA-UY-A78M-01 17 32598177 32598177 C T CCL7 Missense_Mutation p.T30I 0.33 tolerated(0.91) benign(0.017) TCGA-UY-A78M-01 17 40323947 40323947 C G KCNH4 Missense_Mutation p.E352Q 0.40 deleterious(0) possibly_damaging(0.868) TCGA-UY-A78M-01 17 47010657 47010657 G A SNF8 Silent p.F158F 0.14 TCGA-UY-A78M-01 17 57759748 57759748 G C CLTC Missense_Mutation p.E1187Q 0.09 deleterious(0.01) benign(0.236) TCGA-UY-A78M-01 17 73491112 73491112 C T KIAA0195 Nonsense_Mutation p.Q909* 0.31 TCGA-UY-A78M-01 17 74722447 74722447 C A JMJD6 Silent p.L37L 0.31 TCGA-UY-A78M-01 17 74722559 74722559 C T JMJD6 5'UTR 0.37 TCGA-UY-A78M-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.62 deleterious(0) probably_damaging(0.947) TCGA-UY-A78M-01 18 20573153 20573153 G T RBBP8 Nonsense_Mutation p.E455* 0.08 TCGA-UY-A78M-01 18 57026360 57026360 G A LMAN1 Silent p.V39V 0.36 TCGA-UY-A78M-01 18 74083447 74083447 G A ZNF516 Silent p.L1113L 0.32 TCGA-UY-A78M-01 19 14675758 14675758 C T TECR Intron 0.38 TCGA-UY-A78M-01 19 15580709 15580709 C T PGLYRP2 Missense_Mutation p.E459K 0.25 deleterious(0.02) possibly_damaging(0.615) TCGA-UY-A78M-01 19 18183118 18183118 C T IL12RB1 Silent p.A275A 0.17 TCGA-UY-A78M-01 19 19388681 19388681 C T SUGP1 Missense_Mutation p.R548H 0.33 deleterious(0) probably_damaging(0.994) TCGA-UY-A78M-01 19 20959159 20959159 C G ZNF66 5'Flank 0.28 TCGA-UY-A78M-01 19 42473622 42473622 C T ATP1A3 Missense_Mutation p.V898I 0.36 tolerated(0.71) benign(0.003) TCGA-UY-A78M-01 19 42793519 42793519 A G CIC Missense_Mutation p.M441V 0.31 probably_damaging(0.91) TCGA-UY-A78M-01 19 47242064 47242064 C G STRN4 Missense_Mutation p.E122Q 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-UY-A78M-01 19 51133272 51133272 C T SYT3 Silent p.G277G 0.16 TCGA-UY-A78M-01 19 52001356 52001356 C T SIGLEC12 Missense_Mutation p.E441K 0.22 tolerated(0.08) probably_damaging(0.96) TCGA-UY-A78M-01 19 54656175 54656175 G A CNOT3 Silent p.L572L 0.11 TCGA-UY-A78M-01 19 54744749 54744749 C A LILRA6 Nonsense_Mutation p.E305* 0.09 TCGA-UY-A78M-01 19 57088598 57088598 G C ZNF470 Missense_Mutation p.Q267H 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78M-01 1 109777877 109777877 G A SARS Missense_Mutation p.E265K 0.10 deleterious(0.01) possibly_damaging(0.718) TCGA-UY-A78M-01 1 11189822 11189822 C T MTOR Missense_Mutation p.R1896Q 0.11 tolerated(0.66) benign(0.023) TCGA-UY-A78M-01 1 144825369 144825369 C G NBPF9 Missense_Mutation p.L440V 0.02 tolerated(0.14) unknown(0) TCGA-UY-A78M-01 1 152283637 152283637 G C FLG Missense_Mutation p.S1242C 0.04 possibly_damaging(0.902) TCGA-UY-A78M-01 1 159900011 159900011 C T IGSF9 Missense_Mutation p.E678K 0.05 tolerated(0.19) benign(0.026) TCGA-UY-A78M-01 1 159907584 159907584 G C IGSF9 Missense_Mutation p.L98V 0.85 tolerated(0.3) benign(0.405) TCGA-UY-A78M-01 1 176563772 176563772 C T PAPPA2 Silent p.T344T 0.10 TCGA-UY-A78M-01 1 201355863 201355863 G C LAD1 Nonsense_Mutation p.S209* 0.08 TCGA-UY-A78M-01 1 205129378 205129378 C T DSTYK Missense_Mutation p.E657K 0.65 deleterious(0) probably_damaging(0.951) TCGA-UY-A78M-01 1 209956687 209956687 T C C1orf74 Missense_Mutation p.E98G 0.10 tolerated(0.24) benign(0.015) TCGA-UY-A78M-01 1 214185013 214185013 G T PROX1 Silent p.L661L 0.62 TCGA-UY-A78M-01 1 224475512 224475512 C G NVL Missense_Mutation p.E587Q 0.10 tolerated(0.53) benign(0.002) TCGA-UY-A78M-01 1 236908068 236908068 G A ACTN2 Silent p.Q466Q 0.58 TCGA-UY-A78M-01 1 25229012 25229012 C T RUNX3 Silent p.T297T 0.70 TCGA-UY-A78M-01 1 33235342 33235342 C G KIAA1522 Missense_Mutation p.R219G 0.25 deleterious(0) unknown(0) TCGA-UY-A78M-01 1 40435205 40435205 G A MFSD2A Missense_Mutation p.E533K 0.63 deleterious(0.03) benign(0.14) TCGA-UY-A78M-01 1 41284238 41284238 C T KCNQ4 Silent p.F198F 0.08 TCGA-UY-A78M-01 1 75055294 75055294 C T C1orf173 Intron 0.63 TCGA-UY-A78M-01 1 93720082 93720082 G C CCDC18 Missense_Mutation p.E1138Q 0.69 tolerated(0.09) probably_damaging(0.955) TCGA-UY-A78M-01 20 37555177 37555177 C T FAM83D Missense_Mutation p.S61L 0.19 tolerated(0.15) benign(0.018) TCGA-UY-A78M-01 20 44439920 44439920 G C DNTTIP1 3'UTR 0.52 TCGA-UY-A78M-01 20 57767884 57767884 G A ZNF831 Missense_Mutation p.G604S 0.07 tolerated(0.82) benign(0.009) TCGA-UY-A78M-01 20 62196640 62196640 C T HELZ2 Missense_Mutation p.G1179R 0.21 tolerated(0.13) benign(0.391) TCGA-UY-A78M-01 20 62197082 62197082 C G HELZ2 Missense_Mutation p.K1031N 0.06 tolerated_low_confidence(0.39) benign(0.007) TCGA-UY-A78M-01 21 36231857 36231858 - TCA RUNX1 In_Frame_Ins p.L175_T176insM 0.68 TCGA-UY-A78M-01 21 41414414 41414414 C A DSCAM Missense_Mutation p.S1857I 0.71 deleterious(0) probably_damaging(0.999) TCGA-UY-A78M-01 21 43161999 43161999 C A RIPK4 Nonsense_Mutation p.E452* 0.73 TCGA-UY-A78M-01 21 45518370 45518370 C T TRAPPC10 Silent p.L1101L 0.72 TCGA-UY-A78M-01 22 19132084 19132084 C T DGCR14 Missense_Mutation p.E24K 0.41 tolerated_low_confidence(0.71) benign(0) TCGA-UY-A78M-01 22 22657623 22657624 AG - BMS1P20 RNA 0.14 TCGA-UY-A78M-01 22 36055538 36055538 G A APOL6 Silent p.G309G 0.15 TCGA-UY-A78M-01 22 38328845 38328845 C T MICALL1 Silent p.L728L 0.31 TCGA-UY-A78M-01 22 50724615 50724615 C T PLXNB2 Missense_Mutation p.E622K 0.34 tolerated(0.3) benign(0.001) TCGA-UY-A78M-01 2 11367383 11367383 C G ROCK2 Missense_Mutation p.V289L 0.29 deleterious(0.01) possibly_damaging(0.818) TCGA-UY-A78M-01 2 135711822 135711822 G C CCNT2 Silent p.L599L 0.37 TCGA-UY-A78M-01 2 135711840 135711840 G A CCNT2 Silent p.L605L 0.44 TCGA-UY-A78M-01 2 135711927 135711927 G A CCNT2 Missense_Mutation p.M634I 0.33 tolerated(0.68) benign(0.032) TCGA-UY-A78M-01 2 180008470 180008470 G T SESTD1 Nonsense_Mutation p.S233* 0.50 TCGA-UY-A78M-01 2 198498526 198498526 C G RFTN2 Missense_Mutation p.E212Q 0.21 tolerated(0.11) possibly_damaging(0.826) TCGA-UY-A78M-01 2 20647508 20647508 C A RHOB Missense_Mutation p.N94K 0.26 deleterious(0) probably_damaging(0.997) TCGA-UY-A78M-01 2 219538626 219538626 G A STK36 Missense_Mutation p.E84K 0.76 deleterious(0) benign(0.284) TCGA-UY-A78M-01 2 44079765 44079765 C G ABCG8 Missense_Mutation p.S241C 0.35 deleterious(0.02) possibly_damaging(0.739) TCGA-UY-A78M-01 2 61607487 61607487 G T USP34 Nonsense_Mutation p.C277* 0.23 TCGA-UY-A78M-01 2 63631447 63631447 T C WDPCP Missense_Mutation p.I391V 0.19 tolerated(0.42) benign(0.173) TCGA-UY-A78M-01 3 129811985 129811985 C G RP11-93K22.13 Intron 0.29 TCGA-UY-A78M-01 3 136342048 136342048 G A STAG1 Silent p.S24S 0.30 TCGA-UY-A78M-01 3 154886371 154886371 A G MME Missense_Mutation p.Y624C 0.06 tolerated(0.18) possibly_damaging(0.805) TCGA-UY-A78M-01 3 15643059 15643059 C T HACL1 5'UTR 0.12 TCGA-UY-A78M-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.33 tolerated(0.44) benign(0.085) TCGA-UY-A78M-01 3 195452815 195452815 G A MUC20 Silent p.T447T 0.09 TCGA-UY-A78M-01 3 38648165 38648165 G A SCN5A Nonsense_Mutation p.Q379* 0.52 TCGA-UY-A78M-01 3 46622679 46622679 C G TDGF1 Missense_Mutation p.S169C 0.30 tolerated(0.07) benign(0.048) TCGA-UY-A78M-01 3 47868857 47868857 G C DHX30 Missense_Mutation p.E49Q 0.29 tolerated(0.07) probably_damaging(0.982) TCGA-UY-A78M-01 3 47868900 47868900 G C DHX30 Missense_Mutation p.R63T 0.34 deleterious(0.02) possibly_damaging(0.734) TCGA-UY-A78M-01 3 47868907 47868907 C T DHX30 Silent p.L65L 0.35 TCGA-UY-A78M-01 3 48605053 48605053 G A COL7A1 Missense_Mutation p.P2667L 0.15 probably_damaging(0.992) TCGA-UY-A78M-01 3 49691207 49691207 C T BSN Silent p.S1406S 0.08 TCGA-UY-A78M-01 3 49759505 49759505 C G GMPPB Missense_Mutation p.D282H 0.28 deleterious(0) probably_damaging(0.967) TCGA-UY-A78M-01 3 50312440 50312440 C G LSMEM2 5'Flank 0.40 TCGA-UY-A78M-01 3 52441220 52441220 C T BAP1 Missense_Mutation p.D184N 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-UY-A78M-01 3 52441221 52441221 C T BAP1 Silent p.L183L 0.34 TCGA-UY-A78M-01 3 52441226 52441226 C T BAP1 Missense_Mutation p.E182K 0.34 deleterious(0) probably_damaging(1) TCGA-UY-A78M-01 3 52441328 52441328 C T BAP1 Missense_Mutation p.E148K 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78M-01 3 52441434 52441434 C T BAP1 Missense_Mutation p.A140T 0.34 deleterious(0) possibly_damaging(0.845) TCGA-UY-A78M-01 3 52475883 52475883 C T SEMA3G Missense_Mutation p.G168R 0.36 deleterious(0) probably_damaging(1) TCGA-UY-A78M-01 3 77638062 77638062 G T ROBO2 Missense_Mutation p.R903S 0.10 deleterious(0.01) benign(0.227) TCGA-UY-A78M-01 3 93595998 93595998 C T PROS1 Missense_Mutation p.R561Q 0.26 tolerated(0.22) benign(0.06) TCGA-UY-A78M-01 4 122765116 122765116 G A BBS7 Missense_Mutation p.S424F 0.32 deleterious(0) probably_damaging(0.932) TCGA-UY-A78M-01 4 138453164 138453164 C G PCDH18 Missense_Mutation p.G27R 0.14 tolerated(0.07) possibly_damaging(0.484) TCGA-UY-A78M-01 4 177109335 177109336 GG C SPATA4 Frame_Shift_Del p.P247Vfs*11 0.30 TCGA-UY-A78M-01 4 5500722 5500722 G T STK32B Missense_Mutation p.R386L 0.24 tolerated(0.45) benign(0.131) TCGA-UY-A78M-01 4 77292581 77292581 G A CCDC158 Nonsense_Mutation p.Q380* 0.10 TCGA-UY-A78M-01 4 77292652 77292652 G C CCDC158 Nonsense_Mutation p.S356* 0.26 TCGA-UY-A78M-01 4 77292662 77292662 G A CCDC158 Missense_Mutation p.L353F 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-UY-A78M-01 4 77292663 77292663 G A CCDC158 Silent p.V352V 0.21 TCGA-UY-A78M-01 4 94138033 94138033 C G GRID2 Missense_Mutation p.P312A 0.14 deleterious(0.04) benign(0.137) TCGA-UY-A78M-01 4 96762518 96762518 G A PDHA2 3'UTR 0.15 TCGA-UY-A78M-01 5 1406366 1406366 G A SLC6A3 Silent p.T512T 0.37 TCGA-UY-A78M-01 5 140751507 140751507 G A PCDHGB3 Missense_Mutation p.A516T 0.47 deleterious(0.02) possibly_damaging(0.88) TCGA-UY-A78M-01 5 170343486 170343486 T C RANBP17 Silent p.V284V 0.15 TCGA-UY-A78M-01 5 476145 476145 G C SLC9A3 Missense_Mutation p.I710M 0.40 tolerated(0.15) benign(0.013) TCGA-UY-A78M-01 6 100868737 100868737 C T SIM1 Missense_Mutation p.D366N 0.21 deleterious(0.03) benign(0.033) TCGA-UY-A78M-01 6 110434535 110434535 C A WASF1 Nonsense_Mutation p.E88* 0.17 TCGA-UY-A78M-01 6 111650824 111650824 C T REV3L Missense_Mutation p.D2718N 0.48 tolerated(0.34) benign(0.015) TCGA-UY-A78M-01 6 111650886 111650886 C G REV3L Missense_Mutation p.R2697T 0.52 deleterious(0) probably_damaging(0.999) TCGA-UY-A78M-01 6 129371193 129371193 G A LAMA2 Silent p.P81P 0.41 TCGA-UY-A78M-01 6 146870723 146870723 A T RAB32 Missense_Mutation p.D125V 0.40 deleterious(0) probably_damaging(0.995) TCGA-UY-A78M-01 6 17649526 17649526 C A NUP153 Missense_Mutation p.M467I 0.38 tolerated(0.29) benign(0.063) TCGA-UY-A78M-01 6 32020489 32020489 C T TNXB Missense_Mutation p.E3023K 0.28 benign(0.018) TCGA-UY-A78M-01 6 33766905 33766905 C T MLN Missense_Mutation p.E71K 0.47 tolerated(0.18) probably_damaging(0.987) TCGA-UY-A78M-01 6 36169311 36169311 C T BRPF3 Silent p.I404I 0.33 TCGA-UY-A78M-01 6 36287388 36287388 C G C6orf222 Splice_Site p.X557_splice 0.26 TCGA-UY-A78M-01 6 42946338 42946338 G A PEX6 Missense_Mutation p.S184F 0.29 deleterious_low_confidence(0.04) benign(0.007) TCGA-UY-A78M-01 6 90440618 90440618 G A MDN1 Missense_Mutation p.T1656I 0.19 benign(0.014) TCGA-UY-A78M-01 7 122635548 122635548 C T TAS2R16 Missense_Mutation p.M47I 0.08 deleterious(0.03) benign(0.245) TCGA-UY-A78M-01 7 47855056 47855056 C G PKD1L1 Splice_Site p.X2322_splice 0.26 TCGA-UY-A78M-01 7 5568275 5568275 G T ACTB Missense_Mutation p.R147S 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UY-A78M-01 7 72744326 72744326 G A FKBP6 Missense_Mutation p.E147K 0.26 deleterious(0.01) possibly_damaging(0.643) TCGA-UY-A78M-01 7 73521444 73521444 G A LIMK1 Missense_Mutation p.R329Q 0.47 tolerated(0.12) benign(0.048) TCGA-UY-A78M-01 7 99711845 99711845 C G TAF6 Missense_Mutation p.K33N 0.06 tolerated_low_confidence(0.15) benign(0) TCGA-UY-A78M-01 8 100026039 100026039 C T VPS13B Missense_Mutation p.P8L 0.08 deleterious(0) possibly_damaging(0.908) TCGA-UY-A78M-01 8 119938740 119938740 G T TNFRSF11B Silent p.I270I 0.08 TCGA-UY-A78M-01 8 145111913 145111913 G A OPLAH Silent p.D548D 0.20 TCGA-UY-A78M-01 8 145753444 145753444 C T C8orf82 Missense_Mutation p.D57N 0.25 deleterious(0) probably_damaging(1) TCGA-UY-A78M-01 8 22864592 22864592 C G RHOBTB2 Missense_Mutation p.I300M 0.08 deleterious(0) possibly_damaging(0.771) TCGA-UY-A78M-01 8 22864634 22864634 C T RHOBTB2 Silent p.F314F 0.09 TCGA-UY-A78M-01 8 73921437 73921437 G A TERF1 Missense_Mutation p.E106K 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-UY-A78M-01 8 86124414 86124414 C G E2F5 Missense_Mutation p.I302M 0.22 deleterious(0.03) benign(0.014) TCGA-UY-A78M-01 8 99560326 99560326 G A STK3 Missense_Mutation p.R366W 0.23 deleterious(0.01) probably_damaging(0.929) TCGA-UY-A78M-01 9 134322526 134322526 C A PRRC2B Missense_Mutation p.P304T 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A78M-01 9 136595211 136595211 C G SARDH Missense_Mutation p.Q263H 0.52 deleterious(0.01) possibly_damaging(0.579) TCGA-UY-A78M-01 9 136857236 136857236 G A VAV2 Silent p.I55I 0.41 TCGA-UY-A78M-01 9 136857251 136857251 G C VAV2 Silent p.L50L 0.50 TCGA-UY-A78M-01 9 15490016 15490017 - AG PSIP1 Frame_Shift_Ins p.N86Lfs*6 0.33 TCGA-UY-A78M-01 9 35386168 35386168 G C UNC13B Missense_Mutation p.E909Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-UY-A78M-01 9 35846991 35846991 C T TMEM8B Missense_Mutation p.T273M 0.08 deleterious(0) probably_damaging(0.988) TCGA-UY-A78M-01 9 86452116 86452116 G C KIF27 Missense_Mutation p.R1336G 0.40 tolerated_low_confidence(0.17) benign(0.002) TCGA-UY-A78M-01 9 95277072 95277072 G A ECM2 Nonsense_Mutation p.R299* 0.10 TCGA-UY-A78M-01 X 10092308 10092308 C T WWC3 Silent p.N585N 0.28 TCGA-UY-A78M-01 X 118723635 118723635 G T NKRF Missense_Mutation p.Q600K 0.36 tolerated(0.05) possibly_damaging(0.711) TCGA-UY-A78M-01 X 118726373 118726373 G A NKRF Nonsense_Mutation p.Q45* 0.10 TCGA-UY-A78M-01 X 123185178 123185178 C G STAG2 Missense_Mutation p.S377C 0.30 deleterious(0) probably_damaging(0.987) TCGA-UY-A78M-01 X 123185189 123185189 G A STAG2 Missense_Mutation p.D381N 0.31 deleterious(0) probably_damaging(1) TCGA-UY-A78M-01 X 123519767 123519767 G A TENM1 Missense_Mutation p.P1946S 0.49 tolerated(0.16) benign(0.298) TCGA-UY-A78M-01 X 151092926 151092926 G T MAGEA4 Missense_Mutation p.G264C 0.18 deleterious(0.01) possibly_damaging(0.633) TCGA-UY-A78M-01 X 153647890 153647890 G A TAZ Missense_Mutation p.V157I 0.16 deleterious(0) possibly_damaging(0.474) TCGA-UY-A78M-01 X 47518321 47518321 C T UXT Silent p.A14A 0.57 TCGA-UY-A78M-01 X 49021244 49021244 A C MAGIX Missense_Mutation p.Q108P 0.07 deleterious(0.04) possibly_damaging(0.794) TCGA-UY-A78M-01 X 49458749 49458749 G A PAGE1 Missense_Mutation p.S40F 0.53 tolerated(0.21) probably_damaging(0.951) TCGA-UY-A78M-01 X 99662867 99662867 G A PCDH19 Silent p.Y243Y 0.13 TCGA-UY-A78N-01 10 103921400 103921400 C T NOLC1 Missense_Mutation p.T610I 0.42 deleterious_low_confidence(0) benign(0.184) TCGA-UY-A78N-01 10 103986332 103986332 T C ELOVL3 Silent p.H9H 0.44 TCGA-UY-A78N-01 10 115962887 115962887 G A TDRD1 Missense_Mutation p.M251I 0.24 deleterious(0) benign(0.216) TCGA-UY-A78N-01 10 13804668 13804668 C T FRMD4A Missense_Mutation p.V133I 0.43 deleterious(0.04) probably_damaging(0.996) TCGA-UY-A78N-01 10 15120541 15120541 T A ACBD7 Missense_Mutation p.K85N 0.46 deleterious(0) probably_damaging(0.983) TCGA-UY-A78N-01 10 15138489 15138489 G T C10orf111 Missense_Mutation p.S112Y 0.37 deleterious_low_confidence(0) unknown(0) TCGA-UY-A78N-01 10 16949542 16949542 C A CUBN Missense_Mutation p.G2557V 0.47 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 10 21097571 21097571 T C NEBL Missense_Mutation p.R877G 0.32 deleterious(0) benign(0.044) TCGA-UY-A78N-01 10 31791287 31791287 G A ZEB1 Missense_Mutation p.E112K 0.23 tolerated(0.13) benign(0.271) TCGA-UY-A78N-01 10 43620383 43620383 T C RET Missense_Mutation p.F998L 0.58 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 10 44112798 44112798 G A ZNF485 Missense_Mutation p.R436K 0.12 tolerated(1) benign(0) TCGA-UY-A78N-01 10 45480290 45480290 C G RASSF4 Missense_Mutation p.Q135E 0.44 tolerated(0.25) benign(0.263) TCGA-UY-A78N-01 10 70332319 70332319 C G TET1 Missense_Mutation p.T75R 0.37 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 10 70775967 70775967 A C KIAA1279 Missense_Mutation p.Y554S 0.42 deleterious(0.01) possibly_damaging(0.869) TCGA-UY-A78N-01 10 74628463 74628463 C T MCU Missense_Mutation p.L167F 0.44 deleterious(0.04) possibly_damaging(0.449) TCGA-UY-A78N-01 10 75277409 75277409 T C USP54 Silent p.S925S 0.45 TCGA-UY-A78N-01 10 81052027 81052027 G A ZMIZ1 Missense_Mutation p.A291T 0.44 possibly_damaging(0.652) TCGA-UY-A78N-01 10 93608192 93608192 C T TNKS2 Missense_Mutation p.P804L 0.22 tolerated(0.05) benign(0.127) TCGA-UY-A78N-01 10 94399643 94399643 G T KIF11 Missense_Mutation p.Q751H 0.37 deleterious(0.05) benign(0.04) TCGA-UY-A78N-01 10 94399644 94399644 G T KIF11 Nonsense_Mutation p.E752* 0.37 TCGA-UY-A78N-01 11 101834432 101834432 T A KIAA1377 Missense_Mutation p.I889K 0.57 tolerated(0.55) benign(0.168) TCGA-UY-A78N-01 11 117031863 117031863 A G PAFAH1B2 Missense_Mutation p.I58M 0.16 tolerated(0.14) benign(0.345) TCGA-UY-A78N-01 11 118427757 118427757 T C IFT46 Missense_Mutation p.K68E 0.47 deleterious_low_confidence(0.05) benign(0.001) TCGA-UY-A78N-01 11 125359296 125359296 T C FEZ1 Intron 0.46 TCGA-UY-A78N-01 11 17408985 17408985 C G KCNJ11 Missense_Mutation p.Q218H 0.39 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 11 17793258 17793258 C A KCNC1 Missense_Mutation p.T206N 0.24 deleterious(0.03) probably_damaging(0.939) TCGA-UY-A78N-01 11 22399157 22399157 C A SLC17A6 Silent p.T540T 0.57 TCGA-UY-A78N-01 11 26587354 26587354 G A MUC15 Silent p.L45L 0.58 TCGA-UY-A78N-01 11 33374986 33374986 C T HIPK3 Missense_Mutation p.P1174S 0.22 deleterious(0.02) possibly_damaging(0.543) TCGA-UY-A78N-01 11 35016604 35016604 G A PDHX Missense_Mutation p.R464H 0.29 tolerated(1) benign(0.002) TCGA-UY-A78N-01 11 4091330 4091330 G C STIM1 Missense_Mutation p.A230P 0.35 deleterious(0) probably_damaging(0.996) TCGA-UY-A78N-01 11 57099224 57099224 G A SSRP1 Missense_Mutation p.R381C 0.13 deleterious(0) possibly_damaging(0.887) TCGA-UY-A78N-01 11 64756647 64756647 G T BATF2 Missense_Mutation p.P260H 0.52 deleterious(0) probably_damaging(0.935) TCGA-UY-A78N-01 11 65545451 65545451 G A AP5B1 Missense_Mutation p.S838L 0.50 tolerated(0.61) probably_damaging(0.989) TCGA-UY-A78N-01 11 67770563 67770563 G T UNC93B1 Silent p.I107I 0.46 TCGA-UY-A78N-01 11 67925718 67925718 G A SUV420H1 Nonsense_Mutation p.R699* 0.31 TCGA-UY-A78N-01 11 71717195 71717195 G A NUMA1 Silent p.L1860L 0.19 TCGA-UY-A78N-01 11 73610248 73610248 G C PAAF1 Missense_Mutation p.G114R 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-UY-A78N-01 11 76731359 76731359 C T ACER3 Silent p.L264L 0.45 TCGA-UY-A78N-01 11 92916061 92916061 C T SLC36A4 Splice_Site p.X91_splice 0.55 TCGA-UY-A78N-01 11 93819162 93819162 T C HEPHL1 Silent p.Y629Y 0.35 TCGA-UY-A78N-01 11 93844757 93844757 C T HEPHL1 Missense_Mutation p.T1088M 0.50 tolerated(0.06) benign(0.213) TCGA-UY-A78N-01 12 12318192 12318192 A G LRP6 Missense_Mutation p.V528A 0.60 deleterious(0.02) benign(0.2) TCGA-UY-A78N-01 12 132393275 132393275 A G ULK1 Missense_Mutation p.I135V 0.35 tolerated(0.16) possibly_damaging(0.852) TCGA-UY-A78N-01 12 15811450 15811450 T G EPS8 Missense_Mutation p.K336T 0.31 deleterious(0) probably_damaging(0.96) TCGA-UY-A78N-01 12 22065823 22065823 T C ABCC9 Missense_Mutation p.T332A 0.38 tolerated(0.92) benign(0.003) TCGA-UY-A78N-01 12 22208137 22208137 T A CMAS Silent p.G105G 0.68 TCGA-UY-A78N-01 12 40687424 40687424 C G LRRK2 Missense_Mutation p.Q923E 0.35 tolerated(0.12) benign(0.218) TCGA-UY-A78N-01 12 45751191 45751191 G A ANO6 Missense_Mutation p.D349N 0.57 tolerated(0.32) benign(0.019) TCGA-UY-A78N-01 12 46759034 46759034 T G SLC38A2 Intron 0.54 TCGA-UY-A78N-01 12 48135329 48135330 - A RAPGEF3 Frame_Shift_Ins p.E628* 0.20 TCGA-UY-A78N-01 12 49364041 49364041 C T WNT10B Silent p.K56K 0.20 TCGA-UY-A78N-01 12 49663420 49663420 G T TUBA1C Missense_Mutation p.G59V 0.53 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UY-A78N-01 12 50344871 50344871 C T AQP2 Silent p.A86A 0.33 TCGA-UY-A78N-01 12 53494897 53494897 C T IGFBP6 Missense_Mutation p.L185F 0.53 tolerated(0.39) probably_damaging(1) TCGA-UY-A78N-01 12 57648484 57648484 T C R3HDM2 3'UTR 0.19 TCGA-UY-A78N-01 12 58016358 58016358 T A SLC26A10 Missense_Mutation p.V242E 0.49 tolerated(0.09) possibly_damaging(0.529) TCGA-UY-A78N-01 12 62928686 62928689 CTCA - MON2 Frame_Shift_Del p.L567Ffs*15 0.60 TCGA-UY-A78N-01 12 6704529 6704529 C A CHD4 Nonsense_Mutation p.E698* 0.40 TCGA-UY-A78N-01 12 81545689 81545689 C G ACSS3 Missense_Mutation p.L330V 0.31 tolerated(1) benign(0.107) TCGA-UY-A78N-01 12 9009905 9009905 C T A2ML1 Silent p.I998I 0.24 TCGA-UY-A78N-01 13 103282493 103282493 C G TPP2 Missense_Mutation p.L398V 0.41 tolerated(0.05) benign(0.331) TCGA-UY-A78N-01 13 113803351 113803351 G A F10 Silent p.K329K 0.27 TCGA-UY-A78N-01 13 20635276 20635276 T G ZMYM2 Silent p.V941V 0.26 TCGA-UY-A78N-01 13 31711586 31711586 G C HSPH1 Missense_Mutation p.P816A 0.20 tolerated(0.83) benign(0.05) TCGA-UY-A78N-01 13 37573397 37573397 G A ALG5 Missense_Mutation p.A14V 0.50 tolerated(0.51) benign(0.194) TCGA-UY-A78N-01 13 49037864 49037864 T G RB1 Intron 0.66 TCGA-UY-A78N-01 13 88327654 88327654 G C SLITRK5 Missense_Mutation p.C4S 0.22 tolerated_low_confidence(0.06) benign(0.007) TCGA-UY-A78N-01 14 102494123 102494123 G T DYNC1H1 Silent p.S3072S 0.25 TCGA-UY-A78N-01 14 21788313 21788313 T C RPGRIP1 Silent p.L482L 0.63 TCGA-UY-A78N-01 14 23596405 23596405 G A SLC7A8 Missense_Mutation p.A530V 0.31 tolerated_low_confidence(0.3) benign(0) TCGA-UY-A78N-01 14 33015574 33015574 C T AKAP6 Missense_Mutation p.T572I 0.18 tolerated(0.21) benign(0.002) TCGA-UY-A78N-01 14 39583591 39583591 C T GEMIN2 Silent p.L28L 0.74 TCGA-UY-A78N-01 14 45644762 45644762 T C FANCM Silent p.S935S 0.27 TCGA-UY-A78N-01 14 53513535 53513535 T C DDHD1 Missense_Mutation p.Y885C 0.43 deleterious(0.02) probably_damaging(0.992) TCGA-UY-A78N-01 14 55618476 55618476 C - DLGAP5 Frame_Shift_Del p.E769Kfs*11 0.30 TCGA-UY-A78N-01 14 64989672 64989672 A G ZBTB1 Missense_Mutation p.T484A 0.23 tolerated(0.73) benign(0) TCGA-UY-A78N-01 14 69259684 69259684 G A ZFP36L1 5'UTR 0.57 TCGA-UY-A78N-01 14 94464425 94464425 C T LINC00521 RNA 0.30 TCGA-UY-A78N-01 15 23310042 23310042 T C HERC2P2 RNA 0.21 TCGA-UY-A78N-01 15 34077871 34077871 A G RYR3 Missense_Mutation p.M3093V 0.55 benign(0.003) TCGA-UY-A78N-01 15 40675082 40675082 A C KNSTRN Missense_Mutation p.T16P 0.68 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-UY-A78N-01 15 42103140 42103140 C T MAPKBP1 Missense_Mutation p.S89F 0.21 deleterious(0) probably_damaging(0.985) TCGA-UY-A78N-01 15 42731273 42731273 G T ZNF106 Missense_Mutation p.T1478N 0.51 deleterious(0) probably_damaging(0.997) TCGA-UY-A78N-01 15 43821927 43821927 G A MAP1A Silent p.K2705K 0.52 TCGA-UY-A78N-01 15 66629287 66629287 A C TIPIN 3'UTR 0.31 TCGA-UY-A78N-01 15 67687840 67687840 T C IQCH Missense_Mutation p.V615A 0.61 deleterious(0) benign(0.346) TCGA-UY-A78N-01 15 72118837 72118837 T C MYO9A 3'UTR 0.33 TCGA-UY-A78N-01 15 89760487 89760487 C T RLBP1 Silent p.V70V 0.57 TCGA-UY-A78N-01 15 90145134 90145134 C G TICRR Missense_Mutation p.R832G 0.31 tolerated(0.36) benign(0.002) TCGA-UY-A78N-01 15 90171547 90171547 T G KIF7 3'UTR 0.66 TCGA-UY-A78N-01 16 11001118 11001118 A G CIITA Missense_Mutation p.H590R 0.45 tolerated(0.3) benign(0.001) TCGA-UY-A78N-01 16 15125755 15125755 G A PDXDC1 Silent p.G521G 0.70 TCGA-UY-A78N-01 16 15833952 15833952 C T MYH11 Missense_Mutation p.D992N 0.51 possibly_damaging(0.51) TCGA-UY-A78N-01 16 2284977 2284977 C A E4F1 Missense_Mutation p.A637D 0.36 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 16 23503012 23503012 A C GGA2 Missense_Mutation p.M154R 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-UY-A78N-01 16 30983006 30983006 G A SETD1A Silent p.L1108L 0.39 TCGA-UY-A78N-01 16 67863881 67863881 G C CENPT Missense_Mutation p.P325A 0.41 deleterious(0.01) possibly_damaging(0.558) TCGA-UY-A78N-01 16 74339276 74339276 A G PSMD7 Missense_Mutation p.D207G 0.64 tolerated(0.15) benign(0.013) TCGA-UY-A78N-01 16 77229558 77229558 G A MON1B Silent p.E474E 0.19 TCGA-UY-A78N-01 17 11556147 11556147 A T DNAH9 Missense_Mutation p.K808I 0.42 possibly_damaging(0.895) TCGA-UY-A78N-01 17 16321006 16321006 A T TRPV2 Silent p.P8P 0.42 TCGA-UY-A78N-01 17 2577440 2577440 C G PAFAH1B1 Missense_Mutation p.S253C 0.28 deleterious(0.04) probably_damaging(0.924) TCGA-UY-A78N-01 17 26107901 26107901 T C NOS2 Missense_Mutation p.Y299C 0.44 tolerated(0.16) probably_damaging(0.951) TCGA-UY-A78N-01 17 27024663 27024663 T C SUPT6H Missense_Mutation p.V1412A 0.50 deleterious(0) benign(0.215) TCGA-UY-A78N-01 17 3716385 3716385 T C C17orf85 Missense_Mutation p.I606V 0.36 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-UY-A78N-01 17 37829031 37829031 C G PGAP3 3'UTR 0.55 TCGA-UY-A78N-01 17 38935853 38935853 A G KRT27 Silent p.S291S 0.46 TCGA-UY-A78N-01 17 4446307 4446307 G A MYBBP1A Silent p.L931L 0.45 TCGA-UY-A78N-01 17 45897102 45897102 C T OSBPL7 Missense_Mutation p.R83Q 0.05 tolerated(1) benign(0.043) TCGA-UY-A78N-01 17 47810026 47810026 G T FAM117A Missense_Mutation p.Q85K 0.42 tolerated(0.24) benign(0.041) TCGA-UY-A78N-01 17 4857070 4857070 A T ENO3 Missense_Mutation p.E125V 0.45 tolerated_low_confidence(0.1) possibly_damaging(0.704) TCGA-UY-A78N-01 17 5012239 5012239 G C ZNF232 Missense_Mutation p.Q203E 0.44 tolerated(0.11) benign(0.092) TCGA-UY-A78N-01 17 54912384 54912384 G A DGKE Silent p.V76V 0.36 TCGA-UY-A78N-01 17 56772635 56772635 T C RAD51C Intron 0.42 TCGA-UY-A78N-01 17 62272445 62272445 T G TEX2 Missense_Mutation p.N552T 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-UY-A78N-01 17 6604326 6604326 A T SLC13A5 Missense_Mutation p.F279Y 0.38 deleterious(0.01) benign(0.039) TCGA-UY-A78N-01 17 67132375 67132375 C T ABCA6 Silent p.G106G 0.33 TCGA-UY-A78N-01 17 74467778 74467778 G A RHBDF2 Silent p.L836L 0.42 TCGA-UY-A78N-01 18 12449597 12449597 C T SPIRE1 3'UTR 0.53 TCGA-UY-A78N-01 18 22040842 22040842 T C HRH4 Silent p.S50S 0.39 TCGA-UY-A78N-01 18 28720131 28720131 C A DSC1 Missense_Mutation p.S465I 0.43 tolerated(0.22) benign(0.001) TCGA-UY-A78N-01 18 34298173 34298173 A T FHOD3 Missense_Mutation p.Q796L 0.29 tolerated(0.2) benign(0.003) TCGA-UY-A78N-01 19 20229941 20229941 A T ZNF90 Missense_Mutation p.K526N 0.53 tolerated(0.13) benign(0.004) TCGA-UY-A78N-01 19 21132918 21132918 C T ZNF85 Missense_Mutation p.T533I 0.35 deleterious(0.01) benign(0.141) TCGA-UY-A78N-01 19 21991207 21991207 G C ZNF43 Silent p.G544G 0.11 TCGA-UY-A78N-01 19 36303425 36303425 G A PRODH2 Missense_Mutation p.R146W 0.47 deleterious(0.04) benign(0.049) TCGA-UY-A78N-01 19 37904635 37904635 G A ZNF569 Nonsense_Mutation p.Q309* 0.57 TCGA-UY-A78N-01 19 40395942 40395942 G A FCGBP Silent p.T2485T 0.17 TCGA-UY-A78N-01 19 41223815 41223835 AGGAAACAGCCTGGCACTGGT - ITPKC In_Frame_Del p.R259_G265del 0.36 TCGA-UY-A78N-01 19 41282871 41282871 C T MIA Intron 0.25 TCGA-UY-A78N-01 19 41860670 41860670 C T B9D2 Missense_Mutation p.G155S 0.32 deleterious(0) possibly_damaging(0.795) TCGA-UY-A78N-01 19 42582872 42582872 C T ZNF574 Silent p.H38H 0.25 TCGA-UY-A78N-01 19 44276232 44276232 T A KCNN4 Missense_Mutation p.T247S 0.35 deleterious(0) possibly_damaging(0.747) TCGA-UY-A78N-01 19 44284936 44284936 G C KCNN4 Silent p.A26A 0.47 TCGA-UY-A78N-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.44 deleterious(0) probably_damaging(0.979) TCGA-UY-A78N-01 19 46268961 46268961 G A SIX5 Missense_Mutation p.A673V 0.51 tolerated(0.47) benign(0.003) TCGA-UY-A78N-01 19 46271455 46271455 G A SIX5 Silent p.L216L 0.46 TCGA-UY-A78N-01 19 49143140 49143140 C T CA11 Missense_Mutation p.V158M 0.22 deleterious(0) probably_damaging(0.997) TCGA-UY-A78N-01 19 53571970 53571970 G A ZNF160 Missense_Mutation p.S606L 0.35 deleterious(0.02) possibly_damaging(0.879) TCGA-UY-A78N-01 19 55449488 55449488 T C NLRP7 Missense_Mutation p.S685G 0.32 deleterious(0.03) benign(0.287) TCGA-UY-A78N-01 19 7688160 7688160 T C XAB2 Missense_Mutation p.T379A 0.44 tolerated(0.08) benign(0.083) TCGA-UY-A78N-01 19 8431098 8431098 G A ANGPTL4 Missense_Mutation p.D148N 0.41 tolerated(0.52) benign(0.063) TCGA-UY-A78N-01 1 10218426 10218426 C T UBE4B Missense_Mutation p.T980I 0.36 deleterious(0) probably_damaging(0.998) TCGA-UY-A78N-01 1 109815272 109815272 G T CELSR2 Missense_Mutation p.A2689S 0.23 tolerated(1) benign(0.003) TCGA-UY-A78N-01 1 114504992 114504992 G A HIPK1 Missense_Mutation p.A679T 0.26 tolerated(0.43) benign(0.016) TCGA-UY-A78N-01 1 14106611 14106611 A C PRDM2 Missense_Mutation p.K774T 0.33 probably_damaging(0.999) TCGA-UY-A78N-01 1 14106615 14106615 A G PRDM2 Silent p.L775L 0.36 TCGA-UY-A78N-01 1 145416381 145416381 T C HFE2 Silent p.N242N 0.60 TCGA-UY-A78N-01 1 147092014 147092022 CCTCTGAGT - BCL9 In_Frame_Del p.L686_P688del 0.54 TCGA-UY-A78N-01 1 155448259 155448259 T A ASH1L Missense_Mutation p.S1468C 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.671) TCGA-UY-A78N-01 1 156918252 156918252 A G ARHGEF11 Missense_Mutation p.L655P 0.55 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 1 158299775 158299775 C G CD1B Missense_Mutation p.R158S 0.25 tolerated(0.06) benign(0.001) TCGA-UY-A78N-01 1 158618296 158618296 C T SPTA1 Intron 0.30 TCGA-UY-A78N-01 1 185931772 185931772 T C HMCN1 Missense_Mutation p.F651L 0.26 benign(0.055) TCGA-UY-A78N-01 1 193020932 193020932 T G UCHL5 Missense_Mutation p.Q31P 0.17 deleterious(0) probably_damaging(0.997) TCGA-UY-A78N-01 1 19992447 19992447 G A HTR6 Silent p.S67S 0.32 TCGA-UY-A78N-01 1 206628310 206628310 C T SRGAP2 Missense_Mutation p.A730V 0.42 tolerated(0.19) benign(0.005) TCGA-UY-A78N-01 1 207758089 207758089 T A CR1 Missense_Mutation p.C1800S 0.38 deleterious(0) possibly_damaging(0.643) TCGA-UY-A78N-01 1 214706026 214706026 G T PTPN14 Intron 0.60 TCGA-UY-A78N-01 1 33292201 33292201 G A S100PBP Silent p.S167S 0.54 TCGA-UY-A78N-01 1 34046411 34046411 G T CSMD2 Nonsense_Mutation p.Y2445* 0.33 TCGA-UY-A78N-01 1 36859254 36859254 C T LSM10 3'UTR 0.35 TCGA-UY-A78N-01 1 37948444 37948445 - C ZC3H12A Frame_Shift_Ins p.R347Qfs*26 0.28 TCGA-UY-A78N-01 1 40562911 40562911 C T PPT1 5'UTR 0.74 TCGA-UY-A78N-01 1 52826703 52826703 T G CC2D1B Missense_Mutation p.E140D 0.55 tolerated(0.25) benign(0.004) TCGA-UY-A78N-01 1 57233501 57233501 C T C1orf168 Splice_Site p.X355_splice 0.09 TCGA-UY-A78N-01 1 70446112 70446112 T C LRRC7 Silent p.N216N 0.29 TCGA-UY-A78N-01 1 89520864 89520864 T G GBP1 Missense_Mutation p.K468T 0.18 deleterious(0) probably_damaging(0.998) TCGA-UY-A78N-01 1 94363409 94363409 C T GCLM Missense_Mutation p.S108N 0.48 tolerated(0.36) benign(0.002) TCGA-UY-A78N-01 20 21494290 21494290 T C NKX2-2 Silent p.T6T 0.12 TCGA-UY-A78N-01 20 23545653 23545666 TGGTGAAGAAGCAG - CST9L Frame_Shift_Del p.C122Qfs*66 0.25 TCGA-UY-A78N-01 20 31825634 31825634 C T BPIFA1 Silent p.A39A 0.10 TCGA-UY-A78N-01 20 34326906 34326906 C T RBM39 Missense_Mutation p.E29K 0.88 tolerated(0.24) benign(0) TCGA-UY-A78N-01 20 35862483 35862483 C T RPN2 Missense_Mutation p.H580Y 0.79 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 20 39832703 39832703 T C ZHX3 Missense_Mutation p.H285R 0.08 tolerated(0.18) benign(0.104) TCGA-UY-A78N-01 20 44815226 44815226 C T CDH22 Splice_Site p.X555_splice 0.77 TCGA-UY-A78N-01 20 50312639 50312639 T G ATP9A Missense_Mutation p.E180D 0.78 tolerated(0.38) benign(0.253) TCGA-UY-A78N-01 20 8626777 8626777 C T PLCB1 Missense_Mutation p.A138V 0.32 tolerated(0.28) benign(0.222) TCGA-UY-A78N-01 21 34861075 34861075 T C DNAJC28 Missense_Mutation p.Q209R 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-UY-A78N-01 21 35206683 35206683 A C ITSN1 Missense_Mutation p.K1142Q 0.42 deleterious(0.02) benign(0.212) TCGA-UY-A78N-01 21 44479365 44479365 C T CBS Silent p.K398K 0.53 TCGA-UY-A78N-01 21 46032601 46032601 C T KRTAP10-8 Missense_Mutation p.P195L 0.46 deleterious(0.01) unknown(0) TCGA-UY-A78N-01 22 18905905 18905905 G T PRODH Silent p.R451R 0.41 TCGA-UY-A78N-01 22 19467425 19467425 G A CDC45 5'UTR 0.16 TCGA-UY-A78N-01 22 19496133 19496133 C T CDC45 Missense_Mutation p.A411V 0.25 deleterious(0.03) probably_damaging(0.927) TCGA-UY-A78N-01 22 20126764 20126764 A G ZDHHC8 Missense_Mutation p.N51S 0.34 tolerated(0.08) possibly_damaging(0.677) TCGA-UY-A78N-01 22 37414714 37414714 G A TST Silent p.I20I 0.38 TCGA-UY-A78N-01 22 39417497 39417497 T C APOBEC3D 5'UTR 0.29 TCGA-UY-A78N-01 22 44532374 44532374 C T PARVB Missense_Mutation p.S256L 0.54 tolerated(0.1) benign(0.008) TCGA-UY-A78N-01 2 100021109 100021109 G A REV1 Missense_Mutation p.P948L 0.54 tolerated(0.09) benign(0.005) TCGA-UY-A78N-01 2 120395922 120395922 T C PCDP1 Missense_Mutation p.Y688H 0.87 deleterious(0) probably_damaging(0.954) TCGA-UY-A78N-01 2 152496552 152496552 T C NEB Missense_Mutation p.Q2903R 0.79 possibly_damaging(0.577) TCGA-UY-A78N-01 2 160958320 160958320 G A ITGB6 Missense_Mutation p.S765F 0.92 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 2 198266837 198266837 G C SF3B1 Missense_Mutation p.Q699E 0.75 tolerated(0.3) benign(0.313) TCGA-UY-A78N-01 2 203834670 203834670 C T CARF Missense_Mutation p.P328S 0.85 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A78N-01 2 220159808 220159808 T G PTPRN Missense_Mutation p.Y855S 0.92 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 2 27454972 27454972 G A CAD Missense_Mutation p.R842H 0.20 tolerated(0.22) benign(0.018) TCGA-UY-A78N-01 2 27891735 27891735 T G SLC4A1AP Missense_Mutation p.D390E 0.32 tolerated(0.63) benign(0.124) TCGA-UY-A78N-01 2 46609650 46609650 G A EPAS1 Missense_Mutation p.G792R 0.22 tolerated(0.1) benign(0.011) TCGA-UY-A78N-01 2 48573594 48573594 A G FOXN2 Missense_Mutation p.I81V 0.56 tolerated(0.91) benign(0) TCGA-UY-A78N-01 2 68358520 68358520 T C WDR92 Silent p.A308A 0.37 TCGA-UY-A78N-01 2 75919100 75919100 A G GCFC2 Intron 0.39 TCGA-UY-A78N-01 2 97370440 97370440 C T LMAN2L 3'Flank 0.36 TCGA-UY-A78N-01 3 111264196 111264196 T C CD96 Missense_Mutation p.L122P 0.36 deleterious(0) probably_damaging(0.977) TCGA-UY-A78N-01 3 119434529 119434529 A G MAATS1 Silent p.A207A 0.48 TCGA-UY-A78N-01 3 120365873 120365873 A G HGD Missense_Mutation p.Y166H 0.45 tolerated(0.58) benign(0.036) TCGA-UY-A78N-01 3 122641124 122641124 A G SEMA5B Silent p.A535A 0.29 TCGA-UY-A78N-01 3 124952263 124952263 A C ZNF148 Missense_Mutation p.L436R 0.51 deleterious(0) probably_damaging(0.998) TCGA-UY-A78N-01 3 128758690 128758712 GAGGTTACTGGCCCACCCTGTGG - EFCC1 Missense_Mutation 0.31 TCGA-UY-A78N-01 3 130159037 130159037 G A COL6A5 Missense_Mutation p.R1952Q 0.46 tolerated(0.79) benign(0.001) TCGA-UY-A78N-01 3 167754638 167754638 G C GOLIM4 Missense_Mutation p.R277G 0.47 tolerated(0.78) benign(0) TCGA-UY-A78N-01 3 176767762 176767794 ATCATGGATATAGTGATACTCACATTCCAATCT - TBL1XR1 Splice_Site p.X231_splice 0.49 TCGA-UY-A78N-01 3 182545944 182545944 G A ATP11B Missense_Mutation p.E61K 0.42 deleterious(0) probably_damaging(0.995) TCGA-UY-A78N-01 3 195802070 195802070 G A TFRC Silent p.I66I 0.48 TCGA-UY-A78N-01 3 21478694 21478694 G A ZNF385D Silent p.D147D 0.40 TCGA-UY-A78N-01 3 36898806 36898806 C A TRANK1 Missense_Mutation p.D759Y 0.44 deleterious(0.04) benign(0.081) TCGA-UY-A78N-01 3 38159040 38159040 G A DLEC1 Missense_Mutation p.G1475S 0.35 tolerated(0.35) benign(0.009) TCGA-UY-A78N-01 3 39435938 39435938 C T SLC25A38 Silent p.F221F 0.41 TCGA-UY-A78N-01 3 40352498 40352498 G A EIF1B Missense_Mutation p.G49D 0.12 deleterious(0) probably_damaging(0.996) TCGA-UY-A78N-01 3 46506348 46506348 C T LTF Missense_Mutation p.V4I 0.39 tolerated(0.46) unknown(0) TCGA-UY-A78N-01 3 48726987 48726987 C A IP6K2 Missense_Mutation p.R255L 0.26 deleterious(0.02) possibly_damaging(0.76) TCGA-UY-A78N-01 3 49050914 49050914 C T WDR6 Silent p.H679H 0.33 TCGA-UY-A78N-01 3 49200595 49200627 TACTGCCTTGGCTTTAGCCTTGGCCTTGGCCCA - CCDC71 In_Frame_Del p.W339_V349del 0.37 TCGA-UY-A78N-01 3 50150944 50150944 G A RBM5 Silent p.K528K 0.33 TCGA-UY-A78N-01 3 51673450 51673450 G T RAD54L2 Missense_Mutation p.D626Y 0.36 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 3 64619473 64619473 G A ADAMTS9 Nonsense_Mutation p.R647* 0.12 TCGA-UY-A78N-01 3 65361527 65361527 A T MAGI1 Missense_Mutation p.I1030N 0.39 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 3 8574495 8574495 G A LMCD1 Missense_Mutation p.E39K 0.46 deleterious(0) benign(0.306) TCGA-UY-A78N-01 3 9781196 9781196 T A BRPF1 Silent p.I371I 0.22 TCGA-UY-A78N-01 4 128554126 128554126 G C INTU 5'UTR 0.75 TCGA-UY-A78N-01 4 145567984 145567984 A G HHIP Missense_Mutation p.R53G 0.81 deleterious_low_confidence(0) possibly_damaging(0.657) TCGA-UY-A78N-01 4 145635407 145635407 C T HHIP Missense_Mutation p.P485L 0.53 deleterious(0.03) possibly_damaging(0.447) TCGA-UY-A78N-01 4 153691615 153691615 T C TIGD4 Missense_Mutation p.N181S 0.91 tolerated(0.1) benign(0.054) TCGA-UY-A78N-01 4 1805561 1805561 C T FGFR3 Intron 0.41 TCGA-UY-A78N-01 4 23814402 23814402 T A PPARGC1A Nonsense_Mutation p.K663* 0.44 TCGA-UY-A78N-01 4 26483190 26483190 T G CCKAR 3'UTR 0.50 TCGA-UY-A78N-01 4 57798295 57798295 G T REST Nonsense_Mutation p.E1091* 0.73 TCGA-UY-A78N-01 4 69337330 69337330 T G TMPRSS11E Missense_Mutation p.V160G 0.86 tolerated(0.3) possibly_damaging(0.888) TCGA-UY-A78N-01 4 7728551 7728551 C A SORCS2 Missense_Mutation p.D930E 0.17 tolerated(1) benign(0.001) TCGA-UY-A78N-01 4 88048243 88048243 A G AFF1 Silent p.P959P 0.75 TCGA-UY-A78N-01 5 108133901 108133901 C A FER Missense_Mutation p.D6E 0.36 tolerated(1) benign(0.143) TCGA-UY-A78N-01 5 109106139 109106139 A G MAN2A1 Missense_Mutation p.K365E 0.53 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 5 110461459 110461459 A G WDR36 Missense_Mutation p.E891G 0.40 deleterious(0) possibly_damaging(0.861) TCGA-UY-A78N-01 5 134364925 134364925 C T PITX1 Silent p.Q163Q 0.29 TCGA-UY-A78N-01 5 134782554 134782554 C T C5orf20 Missense_Mutation p.R82Q 0.27 tolerated_low_confidence(0.28) benign(0.417) TCGA-UY-A78N-01 5 136324158 136324158 C A SPOCK1 Missense_Mutation p.G294V 0.31 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 5 140214377 140214377 C G PCDHA7 Missense_Mutation p.Q137E 0.42 tolerated_low_confidence(1) benign(0) TCGA-UY-A78N-01 5 140228489 140228489 C G PCDHA9 Missense_Mutation p.Q137E 0.35 tolerated_low_confidence(1) benign(0.014) TCGA-UY-A78N-01 5 140558695 140558695 T C PCDHB8 Silent p.N360N 0.11 TCGA-UY-A78N-01 5 140751746 140751746 C T PCDHGB3 Silent p.D595D 0.24 TCGA-UY-A78N-01 5 149460527 149460527 G A CSF1R Missense_Mutation p.T37M 0.27 tolerated(0.1) benign(0.08) TCGA-UY-A78N-01 5 154395370 154395370 A G KIF4B Missense_Mutation p.M651V 0.36 tolerated(0.06) benign(0.299) TCGA-UY-A78N-01 5 156536061 156536061 G A HAVCR2 5'UTR 0.57 TCGA-UY-A78N-01 5 173534471 173534471 T A NSG2 Missense_Mutation p.I160N 0.20 tolerated(0.53) benign(0.004) TCGA-UY-A78N-01 5 176831363 176831363 C T F12 Silent p.R284R 0.34 TCGA-UY-A78N-01 5 177035948 177035948 C T B4GALT7 Missense_Mutation p.T254I 0.41 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 5 54993790 54993790 T A SLC38A9 5'UTR 0.57 TCGA-UY-A78N-01 5 6600239 6600239 T G NSUN2 Missense_Mutation p.M702L 0.31 tolerated(1) benign(0.003) TCGA-UY-A78N-01 5 76326729 76326729 C T AGGF1 Silent p.I46I 0.35 TCGA-UY-A78N-01 5 82815521 82815521 G A VCAN Missense_Mutation p.V466I 0.38 tolerated(1) benign(0.001) TCGA-UY-A78N-01 6 107003712 107003712 T C AIM1 Silent p.C1477C 0.46 TCGA-UY-A78N-01 6 126210363 126210363 C T NCOA7 Missense_Mutation p.T388I 0.35 deleterious_low_confidence(0.01) benign(0.09) TCGA-UY-A78N-01 6 146125833 146125833 C A FBXO30 Missense_Mutation p.C570F 0.51 tolerated(0.14) benign(0.13) TCGA-UY-A78N-01 6 155139713 155139713 C A SCAF8 Missense_Mutation p.S541Y 0.40 deleterious(0) benign(0.199) TCGA-UY-A78N-01 6 159046174 159046174 C T TMEM181 Silent p.Y468Y 0.41 TCGA-UY-A78N-01 6 32847367 32847367 C G PPP1R2P1 RNA 0.27 TCGA-UY-A78N-01 6 34838884 34838884 C T UHRF1BP1 Silent p.I1324I 0.56 TCGA-UY-A78N-01 6 43014672 43014672 C G CUL7 Missense_Mutation p.K865N 0.28 deleterious(0) probably_damaging(0.997) TCGA-UY-A78N-01 6 43578415 43578439 TTACTGTCATCAAGAACTGTAATAC - POLH Frame_Shift_Del p.T401Lfs*36 0.33 TCGA-UY-A78N-01 6 46827120 46827120 A C GPR116 Missense_Mutation p.D840E 0.50 deleterious(0.04) benign(0.009) TCGA-UY-A78N-01 6 49425684 49425684 C T MUT Missense_Mutation p.G158E 0.58 deleterious_low_confidence(0) probably_damaging(1) TCGA-UY-A78N-01 6 52659041 52659041 A G GSTA1 Missense_Mutation p.I99T 0.43 tolerated(0.56) benign(0.029) TCGA-UY-A78N-01 6 52897402 52897402 G T ICK Silent p.I69I 0.40 TCGA-UY-A78N-01 6 55659208 55659208 A T BMP5 Nonsense_Mutation p.L234* 0.40 TCGA-UY-A78N-01 6 56323851 56323851 G C DST Silent p.P5156P 0.46 TCGA-UY-A78N-01 6 56473708 56473708 T C DST Intron 0.45 TCGA-UY-A78N-01 6 6152127 6152127 T G F13A1 Missense_Mutation p.N655T 0.64 deleterious(0) possibly_damaging(0.73) TCGA-UY-A78N-01 6 73830216 73830216 G A KCNQ5 Missense_Mutation p.R379H 0.35 deleterious(0) possibly_damaging(0.572) TCGA-UY-A78N-01 6 74227517 74227518 - T EEF1A1 3'UTR 0.12 TCGA-UY-A78N-01 6 76063419 76063419 C T FILIP1 Silent p.E155E 0.45 TCGA-UY-A78N-01 7 100084671 100084671 G A NYAP1 Missense_Mutation p.G99D 0.44 tolerated(0.4) possibly_damaging(0.751) TCGA-UY-A78N-01 7 100490874 100490874 C G ACHE Missense_Mutation p.R327P 0.36 tolerated(0.14) probably_damaging(1) TCGA-UY-A78N-01 7 101256708 101256708 C G MYL10 3'UTR 0.29 TCGA-UY-A78N-01 7 105615355 105615355 G A CDHR3 Missense_Mutation p.G38R 0.45 tolerated(0.07) benign(0.319) TCGA-UY-A78N-01 7 124532352 124532352 A C POT1 Missense_Mutation p.F31C 0.43 deleterious(0) probably_damaging(0.997) TCGA-UY-A78N-01 7 131815255 131815255 T C PLXNA4 Missense_Mutation p.M1890V 0.22 tolerated(0.15) benign(0.256) TCGA-UY-A78N-01 7 140058482 140058482 G T SLC37A3 Missense_Mutation p.P160H 0.44 deleterious(0) probably_damaging(1) TCGA-UY-A78N-01 7 16666775 16666775 G A ANKMY2 Missense_Mutation p.A54V 0.39 deleterious(0.03) possibly_damaging(0.687) TCGA-UY-A78N-01 7 18067354 18067354 T C PRPS1L1 Missense_Mutation p.K18E 0.22 tolerated(0.72) benign(0.001) TCGA-UY-A78N-01 7 23340520 23340520 A G MALSU1 Missense_Mutation p.R107G 0.35 tolerated(0.07) possibly_damaging(0.593) TCGA-UY-A78N-01 7 44747277 44747277 T A OGDH Missense_Mutation p.Y965N 0.48 tolerated(0.1) probably_damaging(0.997) TCGA-UY-A78N-01 7 73151295 73151295 G T ABHD11 Missense_Mutation p.T260K 0.39 deleterious(0) probably_damaging(0.987) TCGA-UY-A78N-01 7 75634671 75634672 - GACCTTCCCT STYXL1 Frame_Shift_Ins p.F169Rfs*13 0.18 TCGA-UY-A78N-01 8 11841963 11841963 T G DEFB135 Missense_Mutation p.I33S 0.36 tolerated(0.13) benign(0.002) TCGA-UY-A78N-01 8 124154594 124154594 A G TBC1D31 Silent p.L911L 0.32 TCGA-UY-A78N-01 8 145583676 145583676 C G SLC52A2 Missense_Mutation p.A175G 0.49 tolerated(0.14) benign(0.027) TCGA-UY-A78N-01 8 26365887 26365887 C T PNMA2 Missense_Mutation p.V129M 0.43 tolerated(0.23) benign(0.004) TCGA-UY-A78N-01 8 52320778 52320778 C T PXDNL Missense_Mutation p.D1136N 0.39 deleterious(0) probably_damaging(0.999) TCGA-UY-A78N-01 8 62412013 62412013 G T CLVS1 Splice_Site p.X326_splice 0.46 TCGA-UY-A78N-01 8 68007747 68007747 G T CSPP1 Missense_Mutation p.A244S 0.44 tolerated(0.51) benign(0.004) TCGA-UY-A78N-01 8 80523414 80523414 G A STMN2 5'UTR 0.38 TCGA-UY-A78N-01 8 82606096 82606096 T C SLC10A5 Missense_Mutation p.E371G 0.30 deleterious(0) possibly_damaging(0.861) TCGA-UY-A78N-01 8 94935154 94935154 T C PDP1 Silent p.T314T 0.38 TCGA-UY-A78N-01 9 111826797 111826797 T C TMEM245 Missense_Mutation p.N528S 0.25 tolerated(0.08) benign(0.138) TCGA-UY-A78N-01 9 112211168 112211168 C G PTPN3 Intron 0.38 TCGA-UY-A78N-01 9 130206795 130206795 C T ZNF79 Silent p.T272T 0.28 TCGA-UY-A78N-01 9 135418412 135418412 G C C9orf171 Missense_Mutation p.W273S 0.23 deleterious(0) probably_damaging(0.992) TCGA-UY-A78N-01 9 139276733 139276733 G A SNAPC4 Missense_Mutation p.A680V 0.65 tolerated(0.15) benign(0.002) TCGA-UY-A78N-01 9 140242555 140242555 C G EXD3 Missense_Mutation p.G656R 0.36 tolerated(0.23) benign(0.059) TCGA-UY-A78N-01 9 140242557 140242557 A G EXD3 Missense_Mutation p.L655P 0.47 deleterious(0) probably_damaging(0.993) TCGA-UY-A78N-01 9 21440966 21440966 C T IFNA1 Silent p.L154L 0.45 TCGA-UY-A78N-01 9 33245129 33245129 A G SPINK4 Silent p.G27G 0.31 TCGA-UY-A78N-01 9 37428496 37428496 G T GRHPR Silent p.S140S 0.18 TCGA-UY-A78N-01 9 712554 712554 A C KANK1 Missense_Mutation p.E596D 0.22 tolerated(0.16) benign(0.044) TCGA-UY-A78N-01 X 101909067 101909067 C G GPRASP1 Missense_Mutation p.P76A 0.84 tolerated(0.18) benign(0.013) TCGA-UY-A78N-01 X 105449660 105449660 C G MUM1L1 Missense_Mutation p.P79A 0.94 tolerated(0.7) benign(0.001) TCGA-UY-A78N-01 X 23693164 23693164 A T PRDX4 Missense_Mutation p.R139S 0.91 deleterious(0.03) benign(0.126) TCGA-UY-A78N-01 X 41206266 41206266 G T DDX3X Splice_Site p.X590_splice 0.40 TCGA-UY-A78N-01 X 70339689 70339689 T G MED12 Missense_Mutation p.L120V 0.77 probably_damaging(0.996) TCGA-UY-A78N-01 X 91132444 91132444 A G PCDH11X Missense_Mutation p.H402R 0.86 tolerated(0.29) benign(0.014) TCGA-UY-A78N-01 X 96213049 96213049 C T DIAPH2 Missense_Mutation p.P613S 0.79 tolerated(0.33) unknown(0) TCGA-UY-A78O-01 10 124009069 124009069 G A TACC2 Missense_Mutation p.E2891K 0.30 probably_damaging(0.994) TCGA-UY-A78O-01 10 86198373 86198373 G C CCSER2 Silent p.V658V 0.27 TCGA-UY-A78O-01 10 98111144 98111144 C T OPALIN Silent p.G21G 0.14 TCGA-UY-A78O-01 11 111955994 111955994 T C TIMM8B 3'UTR 0.23 TCGA-UY-A78O-01 11 114320629 114320629 A C REXO2 Missense_Mutation p.K216Q 0.20 deleterious(0.05) benign(0.151) TCGA-UY-A78O-01 11 118372424 118372425 TA - KMT2A Frame_Shift_Del p.I2120Kfs*57 0.20 TCGA-UY-A78O-01 11 123909511 123909511 G T OR10G7 Missense_Mutation p.F66L 0.10 tolerated(0.14) benign(0.012) TCGA-UY-A78O-01 11 12785963 12785963 G C TEAD1 Missense_Mutation p.D62H 0.24 deleterious(0) possibly_damaging(0.874) TCGA-UY-A78O-01 11 55418821 55418821 G T OR4S2 Missense_Mutation p.V148L 0.24 tolerated(0.59) benign(0.014) TCGA-UY-A78O-01 11 5656005 5656005 G C TRIM34 Missense_Mutation p.E222Q 0.11 tolerated(0.24) benign(0.038) TCGA-UY-A78O-01 11 77728041 77728041 C T KCTD14 Silent p.L122L 0.43 TCGA-UY-A78O-01 11 88033734 88033734 G A CTSC Missense_Mutation p.H241Y 0.11 deleterious(0.03) benign(0.002) TCGA-UY-A78O-01 11 88337977 88337977 G A GRM5 Missense_Mutation p.R435W 0.09 deleterious(0) possibly_damaging(0.846) TCGA-UY-A78O-01 11 89177358 89177358 G A NOX4 Missense_Mutation p.S131L 0.22 tolerated(0.11) benign(0.01) TCGA-UY-A78O-01 12 10147796 10147796 C T CLEC1B Missense_Mutation p.R163H 0.21 deleterious(0.05) possibly_damaging(0.65) TCGA-UY-A78O-01 12 110318126 110318126 G C GLTP Missense_Mutation p.I18M 0.29 deleterious(0.02) possibly_damaging(0.726) TCGA-UY-A78O-01 12 122677455 122677455 C G LRRC43 Missense_Mutation p.S418W 0.29 deleterious(0) possibly_damaging(0.746) TCGA-UY-A78O-01 12 124419892 124419892 G A DNAH10 Missense_Mutation p.R4427Q 0.21 possibly_damaging(0.698) TCGA-UY-A78O-01 12 125397084 125397084 C T UBC Missense_Mutation p.D412N 0.16 deleterious(0.04) possibly_damaging(0.679) TCGA-UY-A78O-01 12 16115836 16115836 G A DERA Missense_Mutation p.D155N 0.30 deleterious(0) probably_damaging(0.987) TCGA-UY-A78O-01 12 21068970 21068970 G T SLCO1B3 Missense_Mutation p.R633I 0.17 tolerated(0.06) benign(0.021) TCGA-UY-A78O-01 12 27475429 27475452 GCTGCATCACCAGGCTTGCTTGGC - STK38L 3'UTR 0.16 TCGA-UY-A78O-01 12 4855394 4855394 T C GALNT8 Silent p.Y381Y 0.15 TCGA-UY-A78O-01 12 51319047 51319047 G C METTL7A Missense_Mutation p.E76Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-UY-A78O-01 12 52652062 52652062 G A KRT121P RNA 0.21 TCGA-UY-A78O-01 12 52981619 52981619 G A KRT72 Missense_Mutation p.T369M 0.23 tolerated(0.08) benign(0.064) TCGA-UY-A78O-01 12 56647510 56647510 C G ANKRD52 Missense_Mutation p.Q327H 0.23 deleterious(0.05) possibly_damaging(0.535) TCGA-UY-A78O-01 12 6702742 6702742 G C CHD4 Missense_Mutation p.S785C 0.20 deleterious(0) probably_damaging(0.963) TCGA-UY-A78O-01 12 78515755 78515755 C T NAV3 Missense_Mutation p.S1262F 0.16 deleterious(0.01) probably_damaging(0.936) TCGA-UY-A78O-01 13 28009278 28009278 C T GTF3A Silent p.L294L 0.12 TCGA-UY-A78O-01 13 32783174 32783174 G C FRY Silent p.L1401L 0.22 TCGA-UY-A78O-01 13 37453506 37453506 C T SMAD9 Silent p.L107L 0.33 TCGA-UY-A78O-01 13 43918688 43918688 C A ENOX1 Missense_Mutation p.G341V 0.12 deleterious(0.03) benign(0.295) TCGA-UY-A78O-01 13 61987553 61987553 G C PCDH20 Missense_Mutation p.R227G 0.26 deleterious(0) probably_damaging(0.949) TCGA-UY-A78O-01 13 73366591 73366591 G A PIBF1 Missense_Mutation p.E87K 0.18 deleterious(0) probably_damaging(0.994) TCGA-UY-A78O-01 14 100384169 100384169 C T EML1 Silent p.V620V 0.16 TCGA-UY-A78O-01 14 23549088 23549088 C T ACIN1 Missense_Mutation p.E544K 0.22 benign(0.01) TCGA-UY-A78O-01 14 31084653 31084653 C G G2E3 Missense_Mutation p.S591C 0.16 deleterious(0) probably_damaging(0.941) TCGA-UY-A78O-01 14 51243756 51243756 C G NIN Missense_Mutation p.D193H 0.18 tolerated(0.24) probably_damaging(0.919) TCGA-UY-A78O-01 14 51243768 51243768 C G NIN Missense_Mutation p.E189Q 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78O-01 14 58813743 58813743 T G ARID4A Missense_Mutation p.D360E 0.22 tolerated(1) benign(0.116) TCGA-UY-A78O-01 14 95053760 95053760 C T SERPINA5 Missense_Mutation p.R21C 0.17 deleterious(0) probably_damaging(0.941) TCGA-UY-A78O-01 15 23412180 23412180 T C RP11-467N20.5 Missense_Mutation p.T93A 0.29 possibly_damaging(0.711) TCGA-UY-A78O-01 15 43748128 43748128 G C TP53BP1 Missense_Mutation p.S893C 0.18 deleterious(0.03) possibly_damaging(0.649) TCGA-UY-A78O-01 15 48725131 48725131 G T FBN1 Missense_Mutation p.T2224N 0.26 probably_damaging(0.966) TCGA-UY-A78O-01 15 50791383 50791383 G C USP8 3'UTR 0.40 TCGA-UY-A78O-01 15 63055832 63055832 G A TLN2 Missense_Mutation p.E1678K 0.36 deleterious(0) benign(0.145) TCGA-UY-A78O-01 15 69347677 69347677 G A NOX5 Missense_Mutation p.R668H 0.24 tolerated(0.07) benign(0.032) TCGA-UY-A78O-01 15 70983667 70983667 G A UACA Missense_Mutation p.H113Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-UY-A78O-01 15 72120363 72120363 C T MYO9A Missense_Mutation p.E2349K 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-UY-A78O-01 15 74472297 74472297 G A STRA6 3'Flank 0.38 TCGA-UY-A78O-01 15 74888013 74888013 C T ARID3B Silent p.L527L 0.30 TCGA-UY-A78O-01 15 89819996 89819996 G C FANCI Missense_Mutation p.L389F 0.06 deleterious(0) probably_damaging(0.996) TCGA-UY-A78O-01 16 1400137 1400137 C T TSR3 Missense_Mutation p.G209S 0.35 tolerated(1) benign(0.007) TCGA-UY-A78O-01 16 2816086 2816086 C T SRRM2 Missense_Mutation p.R1853C 0.16 unknown(0) TCGA-UY-A78O-01 16 29825697 29825697 G A PRRT2 Missense_Mutation p.R308H 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 16 3533389 3533389 G A NAA60 Missense_Mutation p.D122N 0.14 tolerated(0.6) benign(0.007) TCGA-UY-A78O-01 16 67650756 67650756 C T CTCF Missense_Mutation p.S354F 0.46 deleterious(0) benign(0.04) TCGA-UY-A78O-01 17 16526186 16526186 C T ZNF624 Missense_Mutation p.E672K 0.30 deleterious(0.04) benign(0.189) TCGA-UY-A78O-01 17 41738758 41738758 G A MEOX1 Missense_Mutation p.P49S 0.19 tolerated(0.48) benign(0.026) TCGA-UY-A78O-01 17 42636362 42636362 G A FZD2 Missense_Mutation p.V436M 0.04 deleterious(0) probably_damaging(0.99) TCGA-UY-A78O-01 17 48264399 48264399 G T COL1A1 Missense_Mutation p.R1170S 0.21 unknown(0) TCGA-UY-A78O-01 17 57297917 57297917 C A GDPD1 5'UTR 0.73 TCGA-UY-A78O-01 17 643744 643744 G C FAM57A Splice_Site p.X137_splice 0.34 TCGA-UY-A78O-01 17 74150388 74150388 C T RNF157 Missense_Mutation p.E596K 0.28 deleterious_low_confidence(0.01) benign(0.22) TCGA-UY-A78O-01 17 7577127 7577127 C G TP53 Missense_Mutation p.E271Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-UY-A78O-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.33 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 17 80085712 80085712 G C CCDC57 Missense_Mutation p.Q808E 0.07 tolerated(0.29) benign(0.092) TCGA-UY-A78O-01 17 80085725 80085725 G A CCDC57 Silent p.S803S 0.07 TCGA-UY-A78O-01 18 12030426 12030426 C T IMPA2 Missense_Mutation p.T279M 0.10 tolerated(0.22) possibly_damaging(0.901) TCGA-UY-A78O-01 18 33692510 33692510 T A SLC39A6 Missense_Mutation p.L626F 0.39 deleterious(0.01) probably_damaging(1) TCGA-UY-A78O-01 19 12885354 12885354 G A HOOK2 Intron 0.38 TCGA-UY-A78O-01 19 14520254 14520254 G A DDX39A Missense_Mutation p.S327L 0.36 tolerated(0.07) benign(0.097) TCGA-UY-A78O-01 19 17086817 17086817 C A CPAMD8 Missense_Mutation p.A682S 0.12 tolerated(0.57) benign(0.025) TCGA-UY-A78O-01 19 17937584 17937584 C T JAK3 Missense_Mutation p.E1115K 0.37 deleterious_low_confidence(0) benign(0.002) TCGA-UY-A78O-01 19 19431768 19431768 G C MAU2 Missense_Mutation p.E34Q 0.29 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 19 21512038 21512038 G C ZNF708 5'UTR 0.08 TCGA-UY-A78O-01 19 2852508 2852508 G A ZNF555 Missense_Mutation p.G149R 0.17 tolerated(0.09) benign(0.002) TCGA-UY-A78O-01 19 3462850 3462850 G T NFIC 3'UTR 0.11 TCGA-UY-A78O-01 19 34710712 34710712 C G LSM14A Missense_Mutation p.P356A 0.36 tolerated(0.34) benign(0.008) TCGA-UY-A78O-01 19 3527000 3527000 C G FZR1 Missense_Mutation p.S137C 0.12 tolerated(0.08) benign(0.353) TCGA-UY-A78O-01 19 35801059 35801059 G A MAG Missense_Mutation p.G505E 0.25 tolerated(0.39) benign(0.038) TCGA-UY-A78O-01 19 36550873 36550873 T G WDR62 Missense_Mutation p.C91W 0.12 deleterious(0) probably_damaging(0.997) TCGA-UY-A78O-01 19 41895711 41895711 C T EXOSC5 Missense_Mutation p.D162N 0.22 tolerated(0.13) benign(0.006) TCGA-UY-A78O-01 19 4207841 4207841 C T ANKRD24 Silent p.G236G 0.20 TCGA-UY-A78O-01 19 47197203 47197203 G A PRKD2 Missense_Mutation p.T502I 0.20 tolerated(0.11) benign(0.075) TCGA-UY-A78O-01 19 47260078 47260078 C T FKRP Silent p.F457F 0.30 TCGA-UY-A78O-01 19 47424190 47424190 A - ARHGAP35 Frame_Shift_Del p.V754Ffs*2 0.26 TCGA-UY-A78O-01 19 5111856 5111856 G A KDM4B Intron 0.16 TCGA-UY-A78O-01 19 51561852 51561852 C G KLK13 Missense_Mutation p.K196N 0.07 tolerated(0.45) possibly_damaging(0.796) TCGA-UY-A78O-01 19 53270324 53270324 G C ZNF600 Missense_Mutation p.Q229E 0.37 tolerated(0.06) benign(0.431) TCGA-UY-A78O-01 19 56688516 56688516 C T GALP Silent p.V13V 0.17 TCGA-UY-A78O-01 19 5692058 5692058 C T LONP1 Silent p.L955L 0.22 TCGA-UY-A78O-01 19 6684419 6684419 C T C3 Missense_Mutation p.M1384I 0.18 tolerated(0.14) benign(0.02) TCGA-UY-A78O-01 19 7132292 7132292 G C INSR Missense_Mutation p.L907V 0.12 tolerated(0.2) benign(0) TCGA-UY-A78O-01 19 726158 726158 C T PALM Missense_Mutation p.T9M 0.13 tolerated(0.08) possibly_damaging(0.454) TCGA-UY-A78O-01 19 9024949 9024949 G A MUC16 Missense_Mutation p.R12305C 0.42 probably_damaging(0.923) TCGA-UY-A78O-01 19 9047958 9047958 G A MUC16 Silent p.L11225L 0.24 TCGA-UY-A78O-01 1 10197129 10197129 C T UBE4B Silent p.G743G 0.17 TCGA-UY-A78O-01 1 11561106 11561106 G A PTCHD2 Silent p.E19E 0.33 TCGA-UY-A78O-01 1 117142607 117142607 G A IGSF3 Missense_Mutation p.A682V 0.16 deleterious(0.03) benign(0.104) TCGA-UY-A78O-01 1 12337332 12337332 C T VPS13D Silent p.N1229N 0.09 TCGA-UY-A78O-01 1 150443689 150443689 G C RPRD2 Missense_Mutation p.K755N 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UY-A78O-01 1 150445575 150445575 G A RPRD2 Missense_Mutation p.G1384E 0.37 tolerated_low_confidence(0.06) benign(0.346) TCGA-UY-A78O-01 1 150445578 150445578 G T RPRD2 Missense_Mutation p.G1385V 0.39 tolerated_low_confidence(0.13) probably_damaging(0.997) TCGA-UY-A78O-01 1 152286265 152286265 C T FLG Missense_Mutation p.R366H 0.25 benign(0.049) TCGA-UY-A78O-01 1 153579974 153579974 C G S100A16 3'UTR 0.28 TCGA-UY-A78O-01 1 157737211 157737211 C T FCRL2 Silent p.L324L 0.32 TCGA-UY-A78O-01 1 159273884 159273884 G A FCER1A Silent p.V81V 0.25 TCGA-UY-A78O-01 1 160268894 160268894 C G COPA Missense_Mutation p.E619Q 0.07 tolerated(0.14) benign(0.086) TCGA-UY-A78O-01 1 165513719 165513719 G A LRRC52 Silent p.E62E 0.10 TCGA-UY-A78O-01 1 186037081 186037081 C A HMCN1 Silent p.I2607I 0.35 TCGA-UY-A78O-01 1 186088378 186088378 C T HMCN1 Silent p.V3968V 0.24 TCGA-UY-A78O-01 1 201983043 201983043 C G ELF3 Missense_Mutation p.R298G 0.45 deleterious(0) benign(0.103) TCGA-UY-A78O-01 1 234743060 234743060 G C IRF2BP2 Missense_Mutation p.F529L 0.06 deleterious(0) possibly_damaging(0.827) TCGA-UY-A78O-01 1 235940598 235940598 G A LYST Missense_Mutation p.S1742L 0.20 tolerated(0.27) benign(0.108) TCGA-UY-A78O-01 1 236881251 236881251 C A ACTN2 Missense_Mutation p.L74M 0.20 deleterious(0.04) probably_damaging(1) TCGA-UY-A78O-01 1 240371520 240371520 C T FMN2 Silent p.P1136P 0.16 TCGA-UY-A78O-01 1 26688638 26688638 C T ZNF683 Intron 0.22 TCGA-UY-A78O-01 1 26883156 26883156 G A RPS6KA1 Missense_Mutation p.D319N 0.20 tolerated(0.4) benign(0.003) TCGA-UY-A78O-01 1 34158654 34158654 C T CSMD2 Missense_Mutation p.E1270K 0.23 deleterious(0) possibly_damaging(0.812) TCGA-UY-A78O-01 1 45525816 45525816 G A ZSWIM5 Silent p.G352G 0.30 TCGA-UY-A78O-01 1 64643749 64643749 C G ROR1 Missense_Mutation p.I675M 0.32 deleterious(0) probably_damaging(0.984) TCGA-UY-A78O-01 1 67299722 67299722 C A WDR78 Missense_Mutation p.D615Y 0.30 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 1 74902155 74902155 C G TNNI3K Intron 0.17 TCGA-UY-A78O-01 1 89449172 89449172 C T RBMXL1 Missense_Mutation p.R113K 0.28 tolerated(0.06) benign(0.128) TCGA-UY-A78O-01 20 10541361 10541363 TGT - SLX4IP In_Frame_Del p.L45del 0.17 TCGA-UY-A78O-01 20 13074139 13074139 C G SPTLC3 Silent p.L247L 0.11 TCGA-UY-A78O-01 20 31434531 31434531 C - MAPRE1 Frame_Shift_Del p.N235Kfs*9 0.11 TCGA-UY-A78O-01 20 44569722 44569722 T A PCIF1 Missense_Mutation p.N183K 0.10 deleterious(0) probably_damaging(0.972) TCGA-UY-A78O-01 20 50048808 50048808 C T NFATC2 Missense_Mutation p.G840S 0.13 tolerated(0.57) benign(0.001) TCGA-UY-A78O-01 20 61151550 61151550 C A C20orf166 Intron 0.29 TCGA-UY-A78O-01 21 43984830 43984830 C T SLC37A1 Missense_Mutation p.A383V 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 21 47423687 47423687 C T COL6A1 Silent p.G949G 0.24 TCGA-UY-A78O-01 22 22712320 22712320 T G IGLV1-47 Silent p.S21S 0.25 TCGA-UY-A78O-01 22 25119195 25119195 C T PIWIL3 Silent p.K762K 0.27 TCGA-UY-A78O-01 22 26224900 26224900 C A MYO18B Silent p.R982R 0.31 TCGA-UY-A78O-01 22 36695002 36695002 G A MYH9 Silent p.L1021L 0.21 TCGA-UY-A78O-01 22 39925617 39925617 C T RPS19BP1 Silent p.Q97Q 0.19 TCGA-UY-A78O-01 22 51142340 51142340 C G SHANK3 Silent p.S571S 0.46 TCGA-UY-A78O-01 2 108477319 108477319 A G RGPD4 Missense_Mutation p.K619R 0.53 tolerated(0.1) possibly_damaging(0.636) TCGA-UY-A78O-01 2 141660610 141660610 C T LRP1B Silent p.V1215V 0.19 TCGA-UY-A78O-01 2 150325162 150325162 C T LYPD6 Missense_Mutation p.T74I 0.29 deleterious(0) possibly_damaging(0.787) TCGA-UY-A78O-01 2 152474926 152474926 C A NEB Missense_Mutation p.V3647F 0.40 probably_damaging(0.958) TCGA-UY-A78O-01 2 158622525 158622525 C T ACVR1 Missense_Mutation p.G325E 0.05 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 2 178080517 178080517 G C HNRNPA3 Missense_Mutation p.G79R 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-UY-A78O-01 2 179594422 179594422 C T TTN Silent p.T6186T 0.24 TCGA-UY-A78O-01 2 182322416 182322416 G A ITGA4 Missense_Mutation p.R12Q 0.36 tolerated(0.22) benign(0.014) TCGA-UY-A78O-01 2 182363419 182363419 C G ITGA4 Missense_Mutation p.S537C 0.23 tolerated(0.08) possibly_damaging(0.859) TCGA-UY-A78O-01 2 185803460 185803460 G A ZNF804A Missense_Mutation p.A1113T 0.25 deleterious(0.02) probably_damaging(0.977) TCGA-UY-A78O-01 2 196852871 196852871 A G DNAH7 Missense_Mutation p.V479A 0.23 tolerated(0.34) benign(0.004) TCGA-UY-A78O-01 2 201680225 201680225 G A BZW1 Missense_Mutation p.A108T 0.19 tolerated(0.14) probably_damaging(0.925) TCGA-UY-A78O-01 2 21239517 21239517 C T APOB Silent p.A1042A 0.23 TCGA-UY-A78O-01 2 220414543 220414543 G A TMEM198 Silent p.L350L 0.21 TCGA-UY-A78O-01 2 224462210 224462210 G T SCG2 Silent p.L597L 0.20 TCGA-UY-A78O-01 2 228883144 228883144 G A SPHKAP Missense_Mutation p.T809M 0.23 tolerated(0.14) benign(0.028) TCGA-UY-A78O-01 2 234442405 234442405 C G USP40 Missense_Mutation p.Q408H 0.35 tolerated(0.05) probably_damaging(0.951) TCGA-UY-A78O-01 2 234858702 234858702 C G TRPM8 Missense_Mutation p.S351C 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-UY-A78O-01 2 25472537 25472537 C T DNMT3A Intron 0.12 TCGA-UY-A78O-01 2 62066704 62066704 C G FAM161A Missense_Mutation p.D479H 0.11 deleterious(0) probably_damaging(0.955) TCGA-UY-A78O-01 2 72362513 72362513 C G CYP26B1 Missense_Mutation p.E155D 0.22 deleterious(0.02) possibly_damaging(0.582) TCGA-UY-A78O-01 2 72371192 72371192 G A CYP26B1 Missense_Mutation p.R119C 0.19 tolerated(0.06) possibly_damaging(0.631) TCGA-UY-A78O-01 2 73718395 73718395 C T ALMS1 Silent p.T3102T 0.24 TCGA-UY-A78O-01 2 75919154 75919155 - TT GCFC2 Frame_Shift_Ins p.R365Nfs*7 0.18 TCGA-UY-A78O-01 3 108117564 108117564 C G MYH15 Missense_Mutation p.E1705Q 0.29 deleterious(0) possibly_damaging(0.762) TCGA-UY-A78O-01 3 112724732 112724732 C T C3orf17 Missense_Mutation p.R452Q 0.24 tolerated(0.37) benign(0.003) TCGA-UY-A78O-01 3 119120973 119120973 C A ARHGAP31 Missense_Mutation p.N458K 0.30 deleterious(0.02) benign(0.241) TCGA-UY-A78O-01 3 119451169 119451169 G C MAATS1 Missense_Mutation p.K349N 0.14 deleterious(0.05) benign(0.078) TCGA-UY-A78O-01 3 142078710 142078710 G A XRN1 Missense_Mutation p.T1153I 0.26 tolerated(0.07) benign(0.015) TCGA-UY-A78O-01 3 142413339 142413339 G A PLS1 Silent p.R402R 0.19 TCGA-UY-A78O-01 3 173998854 173998854 G A NLGN1 Missense_Mutation p.E745K 0.27 tolerated_low_confidence(0.08) benign(0.218) TCGA-UY-A78O-01 3 43618615 43618615 A G ANO10 Missense_Mutation p.V244A 0.10 tolerated(0.26) benign(0.241) TCGA-UY-A78O-01 3 48219462 48219462 C G CDC25A Missense_Mutation p.R189T 0.35 tolerated(0.32) benign(0.016) TCGA-UY-A78O-01 3 49412965 49412965 A C RHOA Missense_Mutation p.C20G 0.38 deleterious(0.01) possibly_damaging(0.743) TCGA-UY-A78O-01 3 52387259 52387259 C T DNAH1 Silent p.N1056N 0.33 TCGA-UY-A78O-01 3 77612446 77612446 C G ROBO2 Missense_Mutation p.L566V 0.28 deleterious(0.02) benign(0.302) TCGA-UY-A78O-01 4 113353517 113353517 C T ALPK1 Silent p.S938S 0.18 TCGA-UY-A78O-01 4 177241293 177241293 C T SPCS3 Silent p.L22L 0.34 TCGA-UY-A78O-01 4 264997 264997 G C ZNF732 Missense_Mutation p.T550R 0.38 tolerated(0.96) benign(0) TCGA-UY-A78O-01 4 367216 367216 G C ZNF141 Missense_Mutation p.K330N 0.24 deleterious(0.03) benign(0.007) TCGA-UY-A78O-01 4 44449779 44449779 C G KCTD8 Missense_Mutation p.E254D 0.22 deleterious(0.05) probably_damaging(0.97) TCGA-UY-A78O-01 4 48073608 48073608 C T TXK Missense_Mutation p.E481K 0.46 tolerated(0.6) benign(0.002) TCGA-UY-A78O-01 4 48073661 48073661 C A TXK Missense_Mutation p.G463V 0.41 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 4 57786024 57786024 C T REST Missense_Mutation p.R324C 0.24 deleterious(0.03) possibly_damaging(0.677) TCGA-UY-A78O-01 5 110837688 110837688 G C STARD4 Missense_Mutation p.S85C 0.23 deleterious(0.01) probably_damaging(0.96) TCGA-UY-A78O-01 5 112769769 112769769 G A TSSK1B Silent p.D256D 0.12 TCGA-UY-A78O-01 5 118788226 118788226 C T HSD17B4 5'Flank 0.23 TCGA-UY-A78O-01 5 138163381 138163381 G A CTNNA1 Missense_Mutation p.D346N 0.08 tolerated(0.06) benign(0.25) TCGA-UY-A78O-01 5 138643960 138643960 C G MATR3 Missense_Mutation p.P286A 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-UY-A78O-01 5 140048328 140048328 T A WDR55 Missense_Mutation p.I171N 0.22 deleterious(0) probably_damaging(0.999) TCGA-UY-A78O-01 5 140432459 140432459 G A PCDHB1 Silent p.A468A 0.07 TCGA-UY-A78O-01 5 140590336 140590336 G A PCDHB12 Silent p.A619A 0.13 TCGA-UY-A78O-01 5 140745835 140745835 C T PCDHGA5 Silent p.V646V 0.20 TCGA-UY-A78O-01 5 141381630 141381630 C A GNPDA1 Missense_Mutation p.E278D 0.32 tolerated_low_confidence(0.08) benign(0.001) TCGA-UY-A78O-01 5 149581908 149581908 A T SLC6A7 Splice_Site p.X287_splice 0.12 TCGA-UY-A78O-01 5 149602569 149602569 C T CAMK2A Silent p.A483A 0.22 TCGA-UY-A78O-01 5 156592880 156592880 G C FAM71B Silent p.V100V 0.19 TCGA-UY-A78O-01 5 170148846 170148846 C T KCNIP1 Missense_Mutation p.T100M 0.17 tolerated(0.39) benign(0.017) TCGA-UY-A78O-01 5 180627216 180627216 C T TRIM7 Intron 0.27 TCGA-UY-A78O-01 5 180661254 180661254 C T TRIM41 Missense_Mutation p.R458W 0.13 deleterious(0.03) benign(0.076) TCGA-UY-A78O-01 5 23527281 23527281 G A PRDM9 Missense_Mutation p.R695K 0.17 tolerated(0.74) possibly_damaging(0.908) TCGA-UY-A78O-01 5 36066905 36066905 G A UGT3A2 5'UTR 0.18 TCGA-UY-A78O-01 5 95768685 95768685 G A PCSK1 Missense_Mutation p.A21V 0.22 tolerated(0.27) benign(0.024) TCGA-UY-A78O-01 6 114383971 114383971 G A HS3ST5 Silent p.L13L 0.23 TCGA-UY-A78O-01 6 160225032 160225032 C G PNLDC1 Missense_Mutation p.P84R 0.20 deleterious(0.02) probably_damaging(0.99) TCGA-UY-A78O-01 6 160328856 160328856 G C MAS1 Missense_Mutation p.R290T 0.22 deleterious(0.01) benign(0.22) TCGA-UY-A78O-01 6 167728913 167728913 G T UNC93A Missense_Mutation p.E449D 0.20 tolerated(0.2) benign(0.003) TCGA-UY-A78O-01 6 39053712 39053712 C T GLP1R Missense_Mutation p.R419C 0.42 deleterious(0.01) benign(0.064) TCGA-UY-A78O-01 6 4056646 4056646 G C PRPF4B Missense_Mutation p.R853T 0.08 deleterious(0) unknown(0) TCGA-UY-A78O-01 6 62390941 62390941 C T KHDRBS2 Missense_Mutation p.R326H 0.29 deleterious(0.02) possibly_damaging(0.482) TCGA-UY-A78O-01 6 64404646 64404646 C G PHF3 Nonsense_Mutation p.S891* 0.29 TCGA-UY-A78O-01 7 128432461 128432461 G A CCDC136 5'UTR 0.17 TCGA-UY-A78O-01 7 132193205 132193205 G A PLXNA4 Missense_Mutation p.T83M 0.29 deleterious(0) possibly_damaging(0.76) TCGA-UY-A78O-01 7 143270384 143270384 G A CTAGE15 Missense_Mutation p.E492K 0.18 deleterious(0.05) benign(0.104) TCGA-UY-A78O-01 7 148815350 148815350 C G ZNF425 Missense_Mutation p.E37Q 0.05 tolerated(0.11) possibly_damaging(0.575) TCGA-UY-A78O-01 7 148863310 148863310 G A ZNF398 Missense_Mutation p.E161K 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A78O-01 7 21654773 21654773 G T DNAH11 Missense_Mutation p.Q1298H 0.24 benign(0.005) TCGA-UY-A78O-01 7 45222913 45222913 G A RAMP3 Missense_Mutation p.E117K 0.07 tolerated(0.12) possibly_damaging(0.63) TCGA-UY-A78O-01 7 77762337 77762337 C G MAGI2 Missense_Mutation p.Q1024H 0.09 tolerated(0.07) probably_damaging(0.997) TCGA-UY-A78O-01 7 80546077 80546077 G A SEMA3C Silent p.C7C 0.28 TCGA-UY-A78O-01 7 89854819 89854819 G C STEAP2 Missense_Mutation p.L141F 0.29 tolerated(0.72) benign(0.001) TCGA-UY-A78O-01 7 92763520 92763520 G A SAMD9L Nonsense_Mutation p.R589* 0.23 TCGA-UY-A78O-01 8 139380153 139380153 C A FAM135B Missense_Mutation p.R25I 0.08 deleterious(0) possibly_damaging(0.898) TCGA-UY-A78O-01 8 141742668 141742668 G A PTK2 Intron 0.13 TCGA-UY-A78O-01 8 49987908 49987908 C G C8orf22 3'UTR 0.13 TCGA-UY-A78O-01 8 89198813 89198813 G A MMP16 Missense_Mutation p.P99L 0.07 deleterious(0) probably_damaging(0.999) TCGA-UY-A78O-01 9 104152999 104152999 C T MRPL50 Missense_Mutation p.E76K 0.11 tolerated(0.13) benign(0.077) TCGA-UY-A78O-01 9 115805343 115805343 A C ZFP37 Missense_Mutation p.C519G 0.68 deleterious(0) probably_damaging(1) TCGA-UY-A78O-01 9 121929394 121929394 G A BRINP1 Nonsense_Mutation p.Q752* 0.53 TCGA-UY-A78O-01 9 129595443 129595443 G T ZBTB43 Missense_Mutation p.A219S 0.14 tolerated(0.78) benign(0.012) TCGA-UY-A78O-01 9 130883529 130883529 C T PTGES2 Silent p.V343V 0.33 TCGA-UY-A78O-01 9 133787188 133787188 G A FIBCD1 Missense_Mutation p.H313Y 0.60 tolerated(0.25) benign(0.098) TCGA-UY-A78O-01 9 138523301 138523301 C T GLT6D1 Missense_Mutation p.R32Q 0.59 tolerated(1) benign(0.007) TCGA-UY-A78O-01 9 32784853 32784853 G C TMEM215 Missense_Mutation p.Q224H 0.11 tolerated(0.15) benign(0.24) TCGA-UY-A78O-01 9 36170617 36170617 G C CCIN Missense_Mutation p.C373S 0.06 deleterious(0.01) probably_damaging(0.97) TCGA-UY-A78O-01 9 75543923 75543923 C G ALDH1A1 Missense_Mutation p.M109I 0.56 tolerated(0.16) benign(0.001) TCGA-UY-A78O-01 X 102004335 102004335 G A BHLHB9 Missense_Mutation p.D138N 0.52 tolerated(0.2) benign(0.076) TCGA-UY-A78O-01 X 119580227 119580227 C T LAMP2 Missense_Mutation p.R266H 0.16 tolerated(0.52) benign(0) TCGA-UY-A78O-01 X 12734518 12734518 G C FRMPD4 Missense_Mutation p.R647T 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-UY-A78O-01 X 128880619 128880619 G C XPNPEP2 Missense_Mutation p.G151A 0.09 deleterious(0.02) benign(0.25) TCGA-UY-A78O-01 X 130419993 130419993 C G IGSF1 Missense_Mutation p.E43Q 0.68 tolerated(0.15) probably_damaging(0.999) TCGA-UY-A78O-01 X 147743903 147743903 G C AFF2 Missense_Mutation p.D219H 0.25 tolerated(0.2) possibly_damaging(0.739) TCGA-UY-A78O-01 X 153761169 153761169 C G G6PD Missense_Mutation p.E377Q 0.07 deleterious(0.01) probably_damaging(0.961) TCGA-UY-A78O-01 X 23353217 23353217 G A PTCHD1 Silent p.P75P 0.18 TCGA-UY-A78O-01 X 84510756 84510756 G A ZNF711 Missense_Mutation p.D191N 0.42 tolerated(0.12) possibly_damaging(0.845) TCGA-UY-A78O-01 X 96369827 96369828 - T DIAPH2 Frame_Shift_Ins p.T818Ifs*5 0.22 TCGA-UY-A78P-01 10 100401615 100401615 T C HPSE2 Missense_Mutation p.K363E 0.13 tolerated(0.39) probably_damaging(0.998) TCGA-UY-A78P-01 10 101590104 101590104 G A ABCC2 Silent p.L887L 0.10 TCGA-UY-A78P-01 10 102056814 102056814 C T PKD2L1 Missense_Mutation p.E370K 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-UY-A78P-01 10 102057141 102057141 C T PKD2L1 Silent p.L318L 0.11 TCGA-UY-A78P-01 10 103899361 103899361 C T PPRC1 Nonsense_Mutation p.R366* 0.14 TCGA-UY-A78P-01 10 108521390 108521390 T A SORCS1 Missense_Mutation p.R305S 0.18 tolerated(0.11) possibly_damaging(0.614) TCGA-UY-A78P-01 10 120934098 120934098 G C PRDX3 Nonsense_Mutation p.S59* 0.12 TCGA-UY-A78P-01 10 128817027 128817027 G C DOCK1 Missense_Mutation p.E398Q 0.17 deleterious(0.01) benign(0.403) TCGA-UY-A78P-01 10 133058610 133058610 G T TCERG1L Silent p.L256L 0.36 TCGA-UY-A78P-01 10 133757608 133757608 G C PPP2R2D Missense_Mutation p.R174T 0.14 deleterious(0) probably_damaging(0.984) TCGA-UY-A78P-01 10 28824662 28824662 C T WAC Missense_Mutation p.H84Y 0.13 tolerated(0.15) benign(0.091) TCGA-UY-A78P-01 10 43019147 43019147 G A ZNF37BP RNA 0.11 TCGA-UY-A78P-01 10 46261243 46261243 C T FAM21C Silent p.F618F 0.09 TCGA-UY-A78P-01 10 48413770 48413770 G A GDF2 Silent p.D366D 0.20 TCGA-UY-A78P-01 10 48428850 48428850 C T GDF10 Missense_Mutation p.E346K 0.14 tolerated(0.1) benign(0.242) TCGA-UY-A78P-01 10 54076615 54076615 G C DKK1 3'UTR 0.25 TCGA-UY-A78P-01 10 61967967 61967967 C T ANK3 Missense_Mutation p.A341T 0.13 probably_damaging(0.953) TCGA-UY-A78P-01 10 72195569 72195569 C G NODAL Missense_Mutation p.E122Q 0.20 tolerated(0.23) possibly_damaging(0.709) TCGA-UY-A78P-01 10 87407175 87407175 G C GRID1 Intron 0.15 TCGA-UY-A78P-01 10 95380402 95380402 C T PDE6C Missense_Mutation p.S165F 0.14 deleterious(0) probably_damaging(0.993) TCGA-UY-A78P-01 10 97919734 97919734 G A ZNF518A RNA 0.08 TCGA-UY-A78P-01 11 113661171 113661171 C G ATF4P4 RNA 0.16 TCGA-UY-A78P-01 11 114271474 114271474 C G RBM7 Missense_Mutation p.F27L 0.09 deleterious(0.05) possibly_damaging(0.832) TCGA-UY-A78P-01 11 12315449 12315449 G A MICALCL Silent p.G157G 0.19 TCGA-UY-A78P-01 11 129312799 129312799 G A BARX2 Missense_Mutation p.M186I 0.08 deleterious(0.05) probably_damaging(0.998) TCGA-UY-A78P-01 11 13443296 13443296 C G BTBD10 Missense_Mutation p.R64T 0.10 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-UY-A78P-01 11 290841 290841 C G ATHL1 Missense_Mutation p.Q212E 0.12 tolerated(0.26) benign(0.016) TCGA-UY-A78P-01 11 43345012 43345012 T A API5 Silent p.V192V 0.11 TCGA-UY-A78P-01 11 43345013 43345013 C G API5 Missense_Mutation p.L193V 0.10 tolerated(0.37) possibly_damaging(0.685) TCGA-UY-A78P-01 11 5344784 5344784 G C OR51B2 Missense_Mutation p.I248M 0.14 deleterious(0) possibly_damaging(0.756) TCGA-UY-A78P-01 11 61213462 61213462 G A SDHAF2 Silent p.L140L 0.18 TCGA-UY-A78P-01 11 613948 613948 C T IRF7 Intron 0.30 TCGA-UY-A78P-01 11 62782164 62782164 C G SLC22A8 Missense_Mutation p.Q89H 0.18 tolerated(0.15) benign(0.06) TCGA-UY-A78P-01 11 6414530 6414530 C T SMPD1 Silent p.F392F 0.18 TCGA-UY-A78P-01 11 65385876 65385876 C T PCNXL3 Missense_Mutation p.S348L 0.17 tolerated(0.06) benign(0.006) TCGA-UY-A78P-01 11 6977211 6977211 G A ZNF215 Missense_Mutation p.D335N 0.10 tolerated(0.61) benign(0.005) TCGA-UY-A78P-01 11 7111454 7111454 C G RBMXL2 Nonsense_Mutation p.S368* 0.28 TCGA-UY-A78P-01 11 82644232 82644232 T C C11orf82 Missense_Mutation p.S618P 0.11 tolerated(1) benign(0) TCGA-UY-A78P-01 12 119588844 119588844 G A SRRM4 Missense_Mutation p.E367K 0.18 tolerated_low_confidence(0.1) probably_damaging(0.953) TCGA-UY-A78P-01 12 120636528 120636528 C T RPLP0 Silent p.L160L 0.06 TCGA-UY-A78P-01 12 121164874 121164874 C T ACADS Missense_Mutation p.S31F 0.12 tolerated(0.07) benign(0.195) TCGA-UY-A78P-01 12 121164977 121164977 C G ACADS Silent p.L65L 0.11 TCGA-UY-A78P-01 12 122441626 122441626 C A WDR66 Missense_Mutation p.L1136I 0.09 deleterious(0) probably_damaging(0.996) TCGA-UY-A78P-01 12 122623447 122623447 G A MLXIP Missense_Mutation p.V824M 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A78P-01 12 122999652 122999652 C G RSRC2 Missense_Mutation p.R242T 0.10 tolerated(0.06) unknown(0) TCGA-UY-A78P-01 12 123482002 123482002 C T PITPNM2 Missense_Mutation p.D448N 0.12 deleterious(0) probably_damaging(0.995) TCGA-UY-A78P-01 12 25398262 25398262 C G KRAS Missense_Mutation p.L19F 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A78P-01 12 272770 272770 C G IQSEC3 Missense_Mutation p.F898L 0.28 deleterious(0.02) possibly_damaging(0.846) TCGA-UY-A78P-01 12 2967747 2967747 G A FOXM1 3'UTR 0.44 TCGA-UY-A78P-01 12 39967595 39967595 A G ABCD2 Silent p.D642D 0.09 TCGA-UY-A78P-01 12 50384532 50384532 G C RACGAP1 Silent p.L586L 0.22 TCGA-UY-A78P-01 12 53207687 53207687 G A KRT4 Silent p.L52L 0.15 TCGA-UY-A78P-01 12 55759040 55759040 C G OR6C75 Nonsense_Mutation p.S49* 0.17 TCGA-UY-A78P-01 12 5603817 5603817 G A NTF3 Missense_Mutation p.R159Q 0.17 deleterious(0) possibly_damaging(0.823) TCGA-UY-A78P-01 12 56490928 56490928 C A ERBB3 Missense_Mutation p.L792M 0.17 tolerated(0.24) benign(0.056) TCGA-UY-A78P-01 12 56515420 56515420 G A ZC3H10 Silent p.L358L 0.15 TCGA-UY-A78P-01 12 5687617 5687617 G C ANO2 Silent p.L767L 0.26 TCGA-UY-A78P-01 12 57422499 57422499 C T MYO1A 3'UTR 0.14 TCGA-UY-A78P-01 12 57485694 57485694 G A NAB2 Silent p.Q290Q 0.16 TCGA-UY-A78P-01 12 57919824 57919824 C T MBD6 Missense_Mutation p.S358L 0.21 tolerated_low_confidence(0.47) unknown(0) TCGA-UY-A78P-01 12 58087954 58087954 G T OS9 Nonsense_Mutation p.E4* 0.09 TCGA-UY-A78P-01 12 70189088 70189088 C T RAB3IP Silent p.L300L 0.34 TCGA-UY-A78P-01 12 78334152 78334152 G A NAV3 Silent p.L99L 0.13 TCGA-UY-A78P-01 12 7848150 7848150 C G GDF3 Missense_Mutation p.E59Q 0.04 tolerated(0.21) benign(0.175) TCGA-UY-A78P-01 12 78515788 78515788 C T NAV3 Missense_Mutation p.S1273L 0.07 deleterious(0.01) possibly_damaging(0.687) TCGA-UY-A78P-01 12 79685854 79685854 G A SYT1 Missense_Mutation p.E140K 0.13 tolerated(0.47) benign(0.002) TCGA-UY-A78P-01 12 91545543 91545543 G C DCN Missense_Mutation p.S258C 0.11 deleterious(0.01) possibly_damaging(0.472) TCGA-UY-A78P-01 12 96410873 96410873 G A LTA4H Missense_Mutation p.S299F 0.14 deleterious(0) probably_damaging(0.972) TCGA-UY-A78P-01 12 99019906 99019906 C G IKBIP Silent p.L312L 0.09 TCGA-UY-A78P-01 13 101755574 101755574 C G NALCN Missense_Mutation p.Q1002H 0.13 tolerated(1) benign(0.02) TCGA-UY-A78P-01 13 111156598 111156598 G C COL4A2 Silent p.P1463P 0.11 TCGA-UY-A78P-01 13 113490557 113490557 C G ATP11A Missense_Mutation p.S566C 0.06 deleterious(0.05) possibly_damaging(0.852) TCGA-UY-A78P-01 13 114135056 114135056 G A DCUN1D2 Missense_Mutation p.P75S 0.13 tolerated(0.12) benign(0.005) TCGA-UY-A78P-01 13 115091839 115091839 G C CHAMP1 3'UTR 0.29 TCGA-UY-A78P-01 13 32783174 32783174 G A FRY Silent p.L1401L 0.17 TCGA-UY-A78P-01 13 33268385 33268385 C G PDS5B Missense_Mutation p.Q499E 0.07 deleterious(0) probably_damaging(0.968) TCGA-UY-A78P-01 13 33635583 33635583 C A KL Missense_Mutation p.F789L 0.17 deleterious(0.05) probably_damaging(0.955) TCGA-UY-A78P-01 13 42873628 42873628 C G AKAP11 Nonsense_Mutation p.S249* 0.06 TCGA-UY-A78P-01 13 47255881 47255881 C G LRCH1 Silent p.V195V 0.12 TCGA-UY-A78P-01 13 50623111 50623111 C T MIR16-1 RNA 0.16 TCGA-UY-A78P-01 13 52604054 52604054 C T UTP14C Missense_Mutation p.P372S 0.09 deleterious(0) probably_damaging(1) TCGA-UY-A78P-01 13 52604242 52604242 C G UTP14C Silent p.L434L 0.14 TCGA-UY-A78P-01 13 52604761 52604761 C T UTP14C Silent p.F607F 0.10 TCGA-UY-A78P-01 13 52971417 52971417 C T THSD1 Missense_Mutation p.R324K 0.27 tolerated(0.34) benign(0.002) TCGA-UY-A78P-01 13 52971829 52971829 C G THSD1 Missense_Mutation p.E187Q 0.22 tolerated(0.38) benign(0.288) TCGA-UY-A78P-01 13 72049941 72049941 C G DACH1 Missense_Mutation p.K639N 0.10 probably_damaging(1) TCGA-UY-A78P-01 14 103807435 103807435 C T EIF5 3'UTR 0.12 TCGA-UY-A78P-01 14 104206815 104206815 C G PPP1R13B Missense_Mutation p.E646D 0.12 tolerated(0.3) benign(0.001) TCGA-UY-A78P-01 14 106110143 106110143 C A IGHG2 Missense_Mutation p.D159Y 0.09 deleterious(0) possibly_damaging(0.732) TCGA-UY-A78P-01 14 23885212 23885212 C G MYH7 Splice_Site p.X1651_splice 0.10 TCGA-UY-A78P-01 14 24771484 24771484 G A NOP9 Missense_Mutation p.E333K 0.14 deleterious(0) probably_damaging(0.918) TCGA-UY-A78P-01 14 30107713 30107713 C T PRKD1 Missense_Mutation p.E323K 0.06 deleterious(0) probably_damaging(0.992) TCGA-UY-A78P-01 14 31349683 31349683 G A COCH Silent p.E154E 0.18 TCGA-UY-A78P-01 14 33290762 33290762 C T AKAP6 Missense_Mutation p.S1248F 0.11 deleterious(0) possibly_damaging(0.613) TCGA-UY-A78P-01 14 35872475 35872475 C G NFKBIA Missense_Mutation p.R143P 0.12 tolerated(0.11) probably_damaging(0.96) TCGA-UY-A78P-01 14 45645384 45645384 G A FANCM Missense_Mutation p.E1143K 0.13 deleterious(0.02) benign(0.023) TCGA-UY-A78P-01 14 68220473 68220473 C T ZFYVE26 Missense_Mutation p.G2380E 0.11 tolerated(0.2) probably_damaging(0.973) TCGA-UY-A78P-01 14 77705756 77705756 G C TMEM63C Missense_Mutation p.E243Q 0.14 deleterious(0.05) probably_damaging(0.981) TCGA-UY-A78P-01 14 77901613 77901613 T C VIPAS39 Missense_Mutation p.T346A 0.15 tolerated(0.8) benign(0.001) TCGA-UY-A78P-01 14 90651196 90651196 C T KCNK13 Missense_Mutation p.S359L 0.13 deleterious(0.03) possibly_damaging(0.775) TCGA-UY-A78P-01 14 92588089 92588089 G A NDUFB1 Silent p.C11C 0.07 TCGA-UY-A78P-01 14 95679595 95679595 A C CLMN Missense_Mutation p.I190S 0.07 deleterious(0) probably_damaging(0.978) TCGA-UY-A78P-01 14 96706511 96706511 G C BDKRB2 Intron 0.14 TCGA-UY-A78P-01 15 102346624 102346624 C G OR4F6 Missense_Mutation p.F234L 0.12 deleterious_low_confidence(0.01) benign(0.002) TCGA-UY-A78P-01 15 34673806 34673806 C G GOLGA8A Missense_Mutation p.E540Q 0.10 deleterious(0) possibly_damaging(0.615) TCGA-UY-A78P-01 15 38632020 38632020 G C SPRED1 Missense_Mutation p.R169T 0.10 tolerated(0.5) benign(0.027) TCGA-UY-A78P-01 15 43738616 43738616 C T TP53BP1 Silent p.A1003A 0.14 TCGA-UY-A78P-01 15 45270817 45270817 G C C15orf43 Missense_Mutation p.K218N 0.11 tolerated(0.09) possibly_damaging(0.747) TCGA-UY-A78P-01 15 52239491 52239491 C T LEO1 Missense_Mutation p.E632K 0.18 deleterious(0.02) possibly_damaging(0.559) TCGA-UY-A78P-01 15 52338691 52338691 C T MAPK6 Missense_Mutation p.H12Y 0.10 tolerated(0.39) benign(0.158) TCGA-UY-A78P-01 15 59455364 59455364 G A MYO1E Silent p.F873F 0.22 TCGA-UY-A78P-01 15 69696292 69696292 C T PAQR5 3'UTR 0.20 TCGA-UY-A78P-01 15 74888114 74888114 G A ARID3B Silent p.%3D 0.21 TCGA-UY-A78P-01 15 93515104 93515104 C G CHD2 Missense_Mutation p.L767V 0.15 deleterious(0) probably_damaging(0.997) TCGA-UY-A78P-01 16 15165081 15165081 G A RRN3 Missense_Mutation p.L386F 0.09 deleterious(0.04) benign(0.013) TCGA-UY-A78P-01 16 1774612 1774612 C G MAPK8IP3 Missense_Mutation p.Q125E 0.16 tolerated(0.09) benign(0.376) TCGA-UY-A78P-01 16 19056722 19056722 C T TMC7 Silent p.I505I 0.06 TCGA-UY-A78P-01 16 19475104 19475104 C G TMC5 Missense_Mutation p.R415G 0.13 deleterious(0.01) probably_damaging(0.933) TCGA-UY-A78P-01 16 28331643 28331643 G A SBK1 Missense_Mutation p.D226N 0.23 deleterious(0.03) benign(0.028) TCGA-UY-A78P-01 16 28912006 28912006 G C ATP2A1 Missense_Mutation p.M623I 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-UY-A78P-01 16 31484869 31484869 C T TGFB1I1 Nonsense_Mutation p.Q41* 0.12 TCGA-UY-A78P-01 16 3298966 3298966 C T MEFV Silent p.L433L 0.11 TCGA-UY-A78P-01 16 3306435 3306435 C T MEFV Silent p.V51V 0.10 TCGA-UY-A78P-01 16 4861246 4861246 C G GLYR1 Missense_Mutation p.Q504H 0.10 deleterious(0) benign(0.009) TCGA-UY-A78P-01 16 4861258 4861258 C G GLYR1 Silent p.L500L 0.09 TCGA-UY-A78P-01 16 4861283 4861283 C T GLYR1 Missense_Mutation p.G492E 0.08 deleterious(0.01) benign(0.087) TCGA-UY-A78P-01 16 55846911 55846911 C G CES1 Silent p.L330L 0.07 TCGA-UY-A78P-01 16 57054780 57054780 G C NLRC5 Missense_Mutation p.Q52H 0.19 deleterious(0) possibly_damaging(0.832) TCGA-UY-A78P-01 16 58583709 58583709 G A CNOT1 Missense_Mutation p.H1146Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-UY-A78P-01 16 67219261 67219261 C A EXOC3L1 Intron 0.10 TCGA-UY-A78P-01 16 74709563 74709563 G C MLKL Missense_Mutation p.Q380E 0.12 tolerated(0.5) benign(0.016) TCGA-UY-A78P-01 16 74709583 74709583 G C MLKL Missense_Mutation p.S373C 0.07 tolerated(0.18) possibly_damaging(0.806) TCGA-UY-A78P-01 16 90021588 90021588 G C DEF8 Missense_Mutation p.E107Q 0.21 tolerated(0.08) benign(0.009) TCGA-UY-A78P-01 17 2226884 2226884 G C TSR1 3'UTR 0.15 TCGA-UY-A78P-01 17 26657492 26657492 C T IFT20 Missense_Mutation p.E90K 0.11 tolerated(0.3) benign(0.049) TCGA-UY-A78P-01 17 31065351 31065351 C G MYO1D Missense_Mutation p.E556Q 0.08 tolerated(0.1) benign(0.171) TCGA-UY-A78P-01 17 35930838 35930838 G A SYNRG Silent p.L415L 0.15 TCGA-UY-A78P-01 17 36714606 36714606 C T SRCIN1 Silent p.L686L 0.11 TCGA-UY-A78P-01 17 39594482 39594482 G A KRT38 Silent p.N368N 0.11 TCGA-UY-A78P-01 17 40762226 40762226 C G TUBG1 Silent p.V50V 0.15 TCGA-UY-A78P-01 17 43585889 43585889 G A LRRC37A4P RNA 0.17 TCGA-UY-A78P-01 17 44953628 44953628 C G WNT9B Silent p.L206L 0.17 TCGA-UY-A78P-01 17 48561906 48561906 G C RSAD1 Missense_Mutation p.R404T 0.11 deleterious(0.03) possibly_damaging(0.597) TCGA-UY-A78P-01 17 56326485 56326485 G A LPO Silent p.V130V 0.14 TCGA-UY-A78P-01 17 58147173 58147173 C T HEATR6 Missense_Mutation p.E280K 0.12 deleterious(0.05) possibly_damaging(0.701) TCGA-UY-A78P-01 17 60059699 60059699 C T MED13 Missense_Mutation p.R1222H 0.16 deleterious(0.02) benign(0.04) TCGA-UY-A78P-01 17 61897779 61897779 C A FTSJ3 Nonsense_Mutation p.E698* 0.13 TCGA-UY-A78P-01 17 61957794 61957794 C T GH2 3'UTR 0.17 TCGA-UY-A78P-01 17 65734428 65734428 G A NOL11 Missense_Mutation p.E574K 0.13 tolerated(0.48) benign(0.118) TCGA-UY-A78P-01 17 7217917 7217917 C T GPS2 Splice_Site p.X32_splice 0.21 TCGA-UY-A78P-01 17 7578177 7578177 C G TP53 Missense_Mutation p.E224D 0.33 tolerated(0.06) benign(0.085) TCGA-UY-A78P-01 17 78210748 78210748 C G SLC26A11 Missense_Mutation p.S253C 0.13 deleterious(0.02) benign(0.1) TCGA-UY-A78P-01 17 78210800 78210800 C T SLC26A11 Silent p.F270F 0.16 TCGA-UY-A78P-01 17 78210803 78210803 C A SLC26A11 Silent p.I271I 0.14 TCGA-UY-A78P-01 17 78210856 78210856 C A SLC26A11 Nonsense_Mutation p.S289* 0.12 TCGA-UY-A78P-01 18 10550124 10550124 G C NAPG Missense_Mutation p.K282N 0.17 tolerated(0.09) probably_damaging(0.918) TCGA-UY-A78P-01 18 23772346 23772346 G C PSMA8 Missense_Mutation p.E248Q 0.12 tolerated(0.4) unknown(0) TCGA-UY-A78P-01 18 3119940 3119940 G A MYOM1 Silent p.N1015N 0.22 TCGA-UY-A78P-01 18 44595955 44595955 C G KATNAL2 Nonsense_Mutation p.S259* 0.12 TCGA-UY-A78P-01 18 50866208 50866208 G A DCC Missense_Mutation p.V764I 0.14 tolerated(1) benign(0.055) TCGA-UY-A78P-01 18 6264031 6264031 G A L3MBTL4 Missense_Mutation p.S45L 0.09 tolerated(0.65) benign(0.001) TCGA-UY-A78P-01 19 10204217 10204217 C G ANGPTL6 Missense_Mutation p.E344Q 0.12 tolerated(0.07) probably_damaging(0.96) TCGA-UY-A78P-01 19 10506744 10506744 C G CDC37 Missense_Mutation p.E80Q 0.18 tolerated(0.09) probably_damaging(0.927) TCGA-UY-A78P-01 19 10574601 10574601 G C PDE4A Missense_Mutation p.E626Q 0.13 deleterious(0) probably_damaging(0.918) TCGA-UY-A78P-01 19 12830094 12830094 C G TNPO2 Silent p.L52L 0.12 TCGA-UY-A78P-01 19 12969513 12969513 G A MAST1 Silent p.E442E 0.19 TCGA-UY-A78P-01 19 17973771 17973771 C T RPL18A Nonsense_Mutation p.Q125* 0.19 TCGA-UY-A78P-01 19 19414582 19414582 C T SUGP1 Missense_Mutation p.E205K 0.15 deleterious(0.01) probably_damaging(1) TCGA-UY-A78P-01 19 24010327 24010327 C G RPSAP58 Missense_Mutation p.L122V 0.11 deleterious(0.02) possibly_damaging(0.59) TCGA-UY-A78P-01 19 37643964 37643964 G A ZNF585A Silent p.F224F 0.15 TCGA-UY-A78P-01 19 40704352 40704352 C T MAP3K10 Silent p.L251L 0.31 TCGA-UY-A78P-01 19 49513753 49513753 C T RUVBL2 Silent p.F224F 0.11 TCGA-UY-A78P-01 19 50655885 50655885 C G IZUMO2 Missense_Mutation p.R216P 0.10 deleterious(0.01) possibly_damaging(0.655) TCGA-UY-A78P-01 19 5222796 5222796 C T PTPRS Missense_Mutation p.D1003N 0.20 tolerated(0.46) benign(0.002) TCGA-UY-A78P-01 19 52537749 52537749 G C ZNF432 Missense_Mutation p.H395D 0.15 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 19 53344307 53344307 C A ZNF468 Nonsense_Mutation p.E414* 0.07 TCGA-UY-A78P-01 19 54726851 54726851 C T LILRB3 5'Flank 0.09 TCGA-UY-A78P-01 19 56896300 56896300 C A ZNF582 Missense_Mutation p.Q162H 0.13 deleterious(0.05) benign(0) TCGA-UY-A78P-01 19 57766064 57766064 C A ZNF805 Nonsense_Mutation p.S626* 0.10 TCGA-UY-A78P-01 19 7117009 7117009 C G INSR 3'UTR 0.24 TCGA-UY-A78P-01 19 7585574 7585574 C T ZNF358 Silent p.S482S 0.26 TCGA-UY-A78P-01 19 8618073 8618073 C G MYO1F Missense_Mutation p.E152Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 19 9870619 9870619 C G ZNF846 Splice_Site p.X77_splice 0.20 TCGA-UY-A78P-01 1 100357995 100357995 C G AGL Missense_Mutation p.Q1031E 0.13 tolerated(0.4) benign(0.001) TCGA-UY-A78P-01 1 109322018 109322018 G C STXBP3 Missense_Mutation p.E265D 0.10 tolerated(0.11) possibly_damaging(0.783) TCGA-UY-A78P-01 1 11897178 11897178 G C CLCN6 Missense_Mutation p.E701D 0.32 tolerated(0.71) benign(0.006) TCGA-UY-A78P-01 1 12049367 12049367 G T MFN2 Missense_Mutation p.A48S 0.09 tolerated(0.45) benign(0.079) TCGA-UY-A78P-01 1 144931522 144931522 G A PDE4DIP Intron 0.12 TCGA-UY-A78P-01 1 145585762 145585762 C T PIAS3 3'UTR 0.18 TCGA-UY-A78P-01 1 151156965 151156965 C G VPS72 Silent p.R130R 0.20 TCGA-UY-A78P-01 1 151265490 151265490 G A PI4KB Silent p.F775F 0.10 TCGA-UY-A78P-01 1 152282567 152282567 C G FLG Missense_Mutation p.D1599H 0.14 probably_damaging(0.961) TCGA-UY-A78P-01 1 152777855 152777855 G T LCE1C Missense_Mutation p.P34T 0.10 tolerated_low_confidence(0.11) unknown(0) TCGA-UY-A78P-01 1 155011959 155011959 G A DCST1 Missense_Mutation p.E115K 0.20 deleterious(0.01) possibly_damaging(0.869) TCGA-UY-A78P-01 1 155774836 155774836 C G GON4L Missense_Mutation p.D517H 0.11 deleterious(0) probably_damaging(0.934) TCGA-UY-A78P-01 1 156386558 156386558 C G C1orf61 Intron 0.10 TCGA-UY-A78P-01 1 158687785 158687785 C G OR6K3 Missense_Mutation p.D41H 0.11 deleterious(0) benign(0.007) TCGA-UY-A78P-01 1 161092186 161092186 G C DEDD Silent p.L236L 0.13 TCGA-UY-A78P-01 1 161131858 161131858 C G USP21 Missense_Mutation p.H211D 0.09 tolerated(0.2) benign(0.209) TCGA-UY-A78P-01 1 167935955 167935955 G A DCAF6 Missense_Mutation p.R83K 0.15 tolerated(0.69) possibly_damaging(0.87) TCGA-UY-A78P-01 1 169080660 169080660 C T ATP1B1 Silent p.F50F 0.11 TCGA-UY-A78P-01 1 169941702 169941702 C G KIFAP3 Missense_Mutation p.K645N 0.13 tolerated(0.05) benign(0.186) TCGA-UY-A78P-01 1 175324669 175324669 C G TNR Missense_Mutation p.L1073F 0.10 deleterious(0) possibly_damaging(0.905) TCGA-UY-A78P-01 1 179851758 179851758 G A TOR1AIP1 Missense_Mutation p.D41N 0.19 tolerated_low_confidence(0.14) benign(0.007) TCGA-UY-A78P-01 1 182026725 182026725 G C ZNF648 Missense_Mutation p.L141V 0.16 tolerated(0.29) benign(0.026) TCGA-UY-A78P-01 1 185112507 185112507 C G TRMT1L Missense_Mutation p.D281H 0.11 deleterious(0) probably_damaging(1) TCGA-UY-A78P-01 1 185897772 185897772 C T HMCN1 Missense_Mutation p.R509W 0.11 possibly_damaging(0.53) TCGA-UY-A78P-01 1 19511604 19511604 C G UBR4 Missense_Mutation p.D643H 0.13 possibly_damaging(0.669) TCGA-UY-A78P-01 1 201981125 201981125 G A ELF3 Silent p.S68S 0.12 TCGA-UY-A78P-01 1 201982329 201982329 G A ELF3 Silent p.K236K 0.18 TCGA-UY-A78P-01 1 204507334 204507334 C T MDM4 Intron 0.18 TCGA-UY-A78P-01 1 207196185 207196185 C G C1orf116 Missense_Mutation p.K308N 0.16 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 1 208062903 208062903 C G CD34 Missense_Mutation p.D221H 0.15 deleterious(0.04) probably_damaging(0.93) TCGA-UY-A78P-01 1 22915503 22915503 G A EPHA8 Silent p.L373L 0.20 TCGA-UY-A78P-01 1 247694890 247694890 C T OR2C3 Silent p.E308E 0.18 TCGA-UY-A78P-01 1 248202421 248202421 C G OR2L2 Silent p.L284L 0.13 TCGA-UY-A78P-01 1 26669264 26669264 G A AIM1L Missense_Mutation p.S188F 0.15 deleterious(0) probably_damaging(0.983) TCGA-UY-A78P-01 1 32672243 32672243 G T IQCC Missense_Mutation p.G187V 0.07 deleterious(0.02) probably_damaging(0.974) TCGA-UY-A78P-01 1 32682548 32682548 C A TMEM234 Missense_Mutation p.R110L 0.15 tolerated(0.11) benign(0.189) TCGA-UY-A78P-01 1 36752097 36752097 G T THRAP3 Missense_Mutation p.R89L 0.18 deleterious(0.01) unknown(0) TCGA-UY-A78P-01 1 37319237 37319237 C T GRIK3 Silent p.L397L 0.08 TCGA-UY-A78P-01 1 45799170 45799170 C G MUTYH Missense_Mutation p.R85T 0.06 tolerated(0.47) benign(0.004) TCGA-UY-A78P-01 1 47603263 47603263 C G CYP4A22 Missense_Mutation p.Q36E 0.16 deleterious(0.01) possibly_damaging(0.507) TCGA-UY-A78P-01 1 82450385 82450385 C G LPHN2 Missense_Mutation p.S1117C 0.14 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 1 90179363 90179363 G C LRRC8C Missense_Mutation p.D412H 0.08 deleterious(0) possibly_damaging(0.754) TCGA-UY-A78P-01 20 11898971 11898971 G A BTBD3 Silent p.L16L 0.12 TCGA-UY-A78P-01 20 18165366 18165366 C G CSRP2BP Nonsense_Mutation p.S702* 0.14 TCGA-UY-A78P-01 20 21367597 21367597 G T XRN2 Missense_Mutation p.G914W 0.11 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-UY-A78P-01 20 2463976 2463976 G C ZNF343 Nonsense_Mutation p.S544* 0.16 TCGA-UY-A78P-01 20 30507720 30507720 C G TTLL9 Missense_Mutation p.I186M 0.18 deleterious(0) probably_damaging(0.979) TCGA-UY-A78P-01 20 30662488 30662488 A G HCK Missense_Mutation p.N131S 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-UY-A78P-01 20 33981905 33981905 C T UQCC1 Missense_Mutation p.R40H 0.08 deleterious_low_confidence(0.02) benign(0.11) TCGA-UY-A78P-01 20 36030892 36030892 C T SRC Missense_Mutation p.R391C 0.11 deleterious(0) probably_damaging(1) TCGA-UY-A78P-01 20 44416620 44416620 C A WFDC3 Silent p.G71G 0.10 TCGA-UY-A78P-01 20 46300943 46300943 C G SULF2 Missense_Mutation p.K525N 0.14 tolerated(0.18) benign(0.342) TCGA-UY-A78P-01 20 61512849 61512849 C G DIDO1 Missense_Mutation p.E1487Q 0.16 probably_damaging(0.999) TCGA-UY-A78P-01 21 30316194 30316194 G C LTN1 Missense_Mutation p.Q1385E 0.16 tolerated(0.99) benign(0.003) TCGA-UY-A78P-01 21 37444647 37444647 G A CBR1 Intron 0.13 TCGA-UY-A78P-01 21 37760025 37760025 G A CHAF1B Missense_Mutation p.D86N 0.18 deleterious(0) probably_damaging(0.948) TCGA-UY-A78P-01 22 32193652 32193652 C T DEPDC5 Silent p.F278F 0.17 TCGA-UY-A78P-01 22 37333551 37333551 C T CSF2RB Silent p.P567P 0.19 TCGA-UY-A78P-01 22 42209824 42209824 G C CCDC134 Missense_Mutation p.E188Q 0.10 tolerated(0.05) benign(0.025) TCGA-UY-A78P-01 22 46656824 46656824 C G PKDREJ Missense_Mutation p.R799P 0.15 tolerated(0.28) benign(0.275) TCGA-UY-A78P-01 22 46795797 46795797 G A CELSR1 Silent p.I1743I 0.21 TCGA-UY-A78P-01 2 128934448 128934448 C G UGGT1 Missense_Mutation p.F1200L 0.10 tolerated(0.23) probably_damaging(0.999) TCGA-UY-A78P-01 2 160605203 160605203 C G MARCH7 Missense_Mutation p.Q468E 0.11 tolerated(0.54) benign(0.01) TCGA-UY-A78P-01 2 173451070 173451070 C A PDK1 Nonsense_Mutation p.S337* 0.10 TCGA-UY-A78P-01 2 1926451 1926451 C G MYT1L Missense_Mutation p.E364Q 0.13 tolerated_low_confidence(0.37) benign(0.012) TCGA-UY-A78P-01 2 216236970 216236970 G C FN1 Missense_Mutation p.Q2126E 0.13 tolerated(0.13) benign(0.138) TCGA-UY-A78P-01 2 217300070 217300070 C T SMARCAL1 Missense_Mutation p.R499W 0.07 deleterious(0) probably_damaging(0.993) TCGA-UY-A78P-01 2 219232465 219232465 C T C2orf62 Silent p.H314H 0.25 TCGA-UY-A78P-01 2 225658135 225658135 C T DOCK10 Missense_Mutation p.E1732K 0.13 deleterious(0) probably_damaging(0.995) TCGA-UY-A78P-01 2 225702505 225702505 C A DOCK10 Missense_Mutation p.D942Y 0.19 deleterious(0) possibly_damaging(0.882) TCGA-UY-A78P-01 2 234346959 234346959 G A DGKD Missense_Mutation p.R340K 0.17 deleterious(0.01) probably_damaging(0.977) TCGA-UY-A78P-01 2 32460495 32460495 G T NLRC4 Silent p.L919L 0.14 TCGA-UY-A78P-01 2 38972179 38972179 G C SRSF7 3'UTR 0.09 TCGA-UY-A78P-01 2 44471490 44471490 G A snoU13 5'Flank 0.12 TCGA-UY-A78P-01 2 55253794 55253794 G A RTN4 Missense_Mutation p.P481S 0.13 tolerated(0.42) benign(0.028) TCGA-UY-A78P-01 2 71060101 71060101 C T CD207 Nonsense_Mutation p.W216* 0.12 TCGA-UY-A78P-01 3 10123178 10123178 G C FANCD2 Intron 0.15 TCGA-UY-A78P-01 3 113503259 113503259 G A ATP6V1A Missense_Mutation p.D134N 0.16 tolerated(0.06) benign(0.001) TCGA-UY-A78P-01 3 119466055 119466055 G A MAATS1 Missense_Mutation p.E666K 0.18 deleterious(0) possibly_damaging(0.877) TCGA-UY-A78P-01 3 121350798 121350798 G A HCLS1 Silent p.D452D 0.08 TCGA-UY-A78P-01 3 127965812 127965812 C G EEFSEC Silent p.L150L 0.13 TCGA-UY-A78P-01 3 12881704 12881704 C G RPL32 Missense_Mutation p.K11N 0.09 deleterious(0.03) benign(0.057) TCGA-UY-A78P-01 3 129290063 129290063 G A PLXND1 Silent p.F1140F 0.12 TCGA-UY-A78P-01 3 148859081 148859081 G C HPS3 Splice_Site p.X295_splice 0.10 TCGA-UY-A78P-01 3 149051011 149051011 G C TM4SF18 Missense_Mutation p.I53M 0.11 deleterious(0.01) possibly_damaging(0.815) TCGA-UY-A78P-01 3 150931154 150931154 C T P2RY14 Silent p.Q317Q 0.15 TCGA-UY-A78P-01 3 16638540 16638540 C T DAZL Missense_Mutation p.G125S 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-UY-A78P-01 3 178927974 178927974 G A PIK3CA Missense_Mutation p.E418K 0.10 tolerated(0.06) possibly_damaging(0.886) TCGA-UY-A78P-01 3 178952074 178952074 G C PIK3CA Missense_Mutation p.M1043I 0.12 tolerated(0.11) benign(0.054) TCGA-UY-A78P-01 3 189597930 189597930 G A TP63 Intron 0.20 TCGA-UY-A78P-01 3 197403873 197403873 C T KIAA0226 Silent p.L843L 0.19 TCGA-UY-A78P-01 3 33194777 33194777 G C SUSD5 Silent p.L449L 0.35 TCGA-UY-A78P-01 3 41957538 41957538 G A ULK4 Missense_Mutation p.S245F 0.18 tolerated(0.63) possibly_damaging(0.595) TCGA-UY-A78P-01 3 46399398 46399398 G C CCR2 Missense_Mutation p.G127A 0.13 deleterious(0.04) probably_damaging(0.913) TCGA-UY-A78P-01 3 47663763 47663763 C G SMARCC1 Missense_Mutation p.K905N 0.19 deleterious(0) probably_damaging(0.979) TCGA-UY-A78P-01 3 47663813 47663813 C G SMARCC1 Missense_Mutation p.E889Q 0.10 deleterious(0.02) probably_damaging(0.971) TCGA-UY-A78P-01 3 49165907 49165907 G C LAMB2 Missense_Mutation p.L668V 0.32 deleterious(0) possibly_damaging(0.812) TCGA-UY-A78P-01 3 57283566 57283566 G A APPL1 Missense_Mutation p.D348N 0.12 tolerated(0.97) benign(0.308) TCGA-UY-A78P-01 3 65415387 65415387 C G MAGI1 Missense_Mutation p.D659H 0.06 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 3 9985124 9985124 G A CRELD1 Missense_Mutation p.E325K 0.15 tolerated(0.17) possibly_damaging(0.589) TCGA-UY-A78P-01 4 119810267 119810267 G T SYNPO2 Nonsense_Mutation p.E26* 0.12 TCGA-UY-A78P-01 4 126370967 126370967 C G FAT4 Missense_Mutation p.I2932M 0.10 benign(0.319) TCGA-UY-A78P-01 4 153896629 153896629 G C FHDC1 Missense_Mutation p.R729T 0.13 tolerated(0.46) benign(0.002) TCGA-UY-A78P-01 4 15443878 15443878 G C C1QTNF7 Missense_Mutation p.E116Q 0.10 tolerated(0.17) benign(0.066) TCGA-UY-A78P-01 4 170912874 170912874 C T MFAP3L Silent p.R295R 0.46 TCGA-UY-A78P-01 4 20597447 20597447 G A SLIT2 Missense_Mutation p.E1104K 0.13 tolerated(0.16) probably_damaging(0.998) TCGA-UY-A78P-01 4 38777853 38777853 G T TLR10 5'UTR 0.12 TCGA-UY-A78P-01 4 66467800 66467800 C G EPHA5 Missense_Mutation p.E157Q 0.06 tolerated(0.09) probably_damaging(0.992) TCGA-UY-A78P-01 4 80328694 80328694 C T GK2 Missense_Mutation p.D221N 0.11 tolerated(0.25) benign(0.005) TCGA-UY-A78P-01 5 102490373 102490373 G A PPIP5K2 Splice_Site p.X406_splice 0.18 TCGA-UY-A78P-01 5 125939420 125939420 G T PHAX Missense_Mutation p.Q85H 0.13 deleterious(0.01) probably_damaging(0.962) TCGA-UY-A78P-01 5 139574069 139574069 C G CYSTM1 Missense_Mutation p.P7A 0.11 deleterious_low_confidence(0) unknown(0) TCGA-UY-A78P-01 5 142526943 142526943 C T ARHGAP26 Missense_Mutation p.S662L 0.19 tolerated(0.54) benign(0.307) TCGA-UY-A78P-01 5 157178442 157178442 G A LSM11 Missense_Mutation p.E165K 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-UY-A78P-01 5 180218706 180218706 G A MGAT1 Silent p.F422F 0.19 TCGA-UY-A78P-01 5 34821864 34821864 C T RAI14 Missense_Mutation p.S344F 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-UY-A78P-01 5 66459191 66459191 C T MAST4 Missense_Mutation p.S1395L 0.14 probably_damaging(0.994) TCGA-UY-A78P-01 5 80562124 80562124 G C CKMT2 3'UTR 0.16 TCGA-UY-A78P-01 5 98218883 98218883 G C CHD1 Missense_Mutation p.A876G 0.13 deleterious(0) probably_damaging(1) TCGA-UY-A78P-01 6 107019829 107019829 C T RTN4IP1 3'Flank 0.13 TCGA-UY-A78P-01 6 10891800 10891800 G A SYCP2L Missense_Mutation p.D22N 0.19 tolerated(0.5) benign(0.001) TCGA-UY-A78P-01 6 114378831 114378831 C G HS3ST5 Missense_Mutation p.E211Q 0.12 deleterious(0.03) probably_damaging(0.942) TCGA-UY-A78P-01 6 130465570 130465570 C G SAMD3 3'UTR 0.16 TCGA-UY-A78P-01 6 13638157 13638157 G C RANBP9 Nonsense_Mutation p.S519* 0.12 TCGA-UY-A78P-01 6 136560740 136560740 C T MTFR2 Missense_Mutation p.E245K 0.11 deleterious(0.03) benign(0.219) TCGA-UY-A78P-01 6 142704943 142704943 C T GPR126 Silent p.N395N 0.08 TCGA-UY-A78P-01 6 152605220 152605220 C T SYNE1 Missense_Mutation p.E6034K 0.11 possibly_damaging(0.524) TCGA-UY-A78P-01 6 169632159 169632159 G C THBS2 Silent p.L689L 0.10 TCGA-UY-A78P-01 6 169632218 169632218 G A THBS2 Missense_Mutation p.H670Y 0.12 tolerated(0.19) possibly_damaging(0.854) TCGA-UY-A78P-01 6 26273432 26273432 G A HIST1H2BI Missense_Mutation p.E77K 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-UY-A78P-01 6 26463496 26463496 C T BTN2A1 Missense_Mutation p.S152L 0.17 deleterious(0.01) benign(0.004) TCGA-UY-A78P-01 6 27879959 27879959 G A OR2B2 Missense_Mutation p.L47F 0.11 deleterious(0.01) benign(0.043) TCGA-UY-A78P-01 6 29079839 29079839 C G OR2J3 Missense_Mutation p.L58V 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 6 30893361 30893361 C T VARS2 Silent p.F972F 0.18 TCGA-UY-A78P-01 6 31868798 31868798 G A ZBTB12 Silent p.F95F 0.16 TCGA-UY-A78P-01 6 33162762 33162762 C G RXRB Missense_Mutation p.E476Q 0.07 deleterious(0) probably_damaging(0.993) TCGA-UY-A78P-01 6 38084398 38084398 G A ZFAND3 Missense_Mutation p.E138K 0.15 tolerated(0.07) benign(0.003) TCGA-UY-A78P-01 6 4069827 4069827 C G FAM217A Missense_Mutation p.K210N 0.11 deleterious(0.03) benign(0.258) TCGA-UY-A78P-01 6 42858345 42858345 C T C6orf226 Nonsense_Mutation p.W61* 0.22 TCGA-UY-A78P-01 6 53989400 53989400 C G MLIP Missense_Mutation p.Q117E 0.12 tolerated(0.72) benign(0.006) TCGA-UY-A78P-01 6 656134 656134 G C HUS1B Missense_Mutation p.L271V 0.15 deleterious(0) benign(0.199) TCGA-UY-A78P-01 6 72006211 72006211 A T OGFRL1 Nonsense_Mutation p.R165* 0.10 TCGA-UY-A78P-01 6 73904930 73904930 G T KCNQ5 Missense_Mutation p.W883C 0.10 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-UY-A78P-01 6 84567076 84567076 G C RIPPLY2 Missense_Mutation p.D119H 0.14 deleterious(0) probably_damaging(0.987) TCGA-UY-A78P-01 6 86216962 86216962 C T SNX14 Missense_Mutation p.E931K 0.14 deleterious(0) probably_damaging(0.987) TCGA-UY-A78P-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.26 deleterious(0) possibly_damaging(0.79) TCGA-UY-A78P-01 6 90408689 90408689 C G MDN1 Missense_Mutation p.W3021C 0.19 probably_damaging(0.98) TCGA-UY-A78P-01 6 90572085 90572085 G C CASP8AP2 RNA 0.09 TCGA-UY-A78P-01 7 102614042 102614042 G C FBXL13 Intron 0.14 TCGA-UY-A78P-01 7 104782878 104782878 C T SRPK2 Missense_Mutation p.E374K 0.17 tolerated(0.43) benign(0.081) TCGA-UY-A78P-01 7 1131320 1131320 C T GPER1 5'UTR 0.08 TCGA-UY-A78P-01 7 1131658 1131658 C T GPER1 Silent p.F98F 0.09 TCGA-UY-A78P-01 7 1132276 1132276 C T GPER1 Silent p.L304L 0.16 TCGA-UY-A78P-01 7 129104487 129104487 G C STRIP2 Missense_Mutation p.D562H 0.14 deleterious(0) probably_damaging(0.999) TCGA-UY-A78P-01 7 139737630 139737630 G C PARP12 Silent p.V403V 0.16 TCGA-UY-A78P-01 7 140454004 140454004 C T BRAF Missense_Mutation p.R575K 0.09 deleterious(0.01) possibly_damaging(0.746) TCGA-UY-A78P-01 7 149522453 149522453 C T SSPO RNA 0.09 TCGA-UY-A78P-01 7 150911040 150911040 A G ABCF2 Intron 0.22 TCGA-UY-A78P-01 7 151847995 151847995 G C KMT2C Nonsense_Mutation p.S4255* 0.16 TCGA-UY-A78P-01 7 15652222 15652222 G A MEOX2 Silent p.F235F 0.16 TCGA-UY-A78P-01 7 2279177 2279177 G A FTSJ2 Silent p.F58F 0.09 TCGA-UY-A78P-01 7 40102640 40102640 C G CDK13 Silent p.L907L 0.09 TCGA-UY-A78P-01 7 5662778 5662778 C G RNF216 Missense_Mutation p.E829Q 0.22 tolerated(0.11) possibly_damaging(0.868) TCGA-UY-A78P-01 7 5780975 5780975 C T RNF216 Missense_Mutation p.E225K 0.18 tolerated_low_confidence(0.23) benign(0.127) TCGA-UY-A78P-01 7 65553855 65553855 C A ASL Silent p.L260L 0.26 TCGA-UY-A78P-01 7 73097097 73097097 G T DNAJC30 Missense_Mutation p.F219L 0.12 tolerated(0.14) unknown(0) TCGA-UY-A78P-01 7 7612152 7612152 G C MIOS Missense_Mutation p.D16H 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-UY-A78P-01 7 92019419 92019419 G C ANKIB1 Missense_Mutation p.E681Q 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-UY-A78P-01 7 99250264 99250264 G A CYP3A5 Missense_Mutation p.P389S 0.22 deleterious(0.01) possibly_damaging(0.902) TCGA-UY-A78P-01 8 108913173 108913173 C A RSPO2 3'UTR 0.15 TCGA-UY-A78P-01 8 144687950 144687950 C G PYCRL Missense_Mutation p.E261Q 0.36 deleterious(0) probably_damaging(0.971) TCGA-UY-A78P-01 8 17228582 17228582 C T MTMR7 Missense_Mutation p.D92N 0.22 tolerated(0.05) benign(0.003) TCGA-UY-A78P-01 8 17228591 17228591 C G MTMR7 Missense_Mutation p.D89H 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-UY-A78P-01 8 22862930 22862930 C G RHOBTB2 Missense_Mutation p.L102V 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-UY-A78P-01 8 28950358 28950358 G C KIF13B Silent p.V1454V 0.14 TCGA-UY-A78P-01 8 37691242 37691242 C A GPR124 Missense_Mutation p.H445N 0.18 deleterious(0.01) benign(0.224) TCGA-UY-A78P-01 8 65527703 65527703 C T CYP7B1 Missense_Mutation p.E313K 0.24 tolerated(0.07) benign(0.252) TCGA-UY-A78P-01 8 9912066 9912066 C T MSRA Missense_Mutation p.L14F 0.17 tolerated_low_confidence(0.3) benign(0.001) TCGA-UY-A78P-01 9 127644076 127644076 C G GOLGA1 Missense_Mutation p.C708S 0.25 tolerated(0.71) probably_damaging(0.984) TCGA-UY-A78P-01 9 128000433 128000433 G A HSPA5 Silent p.I463I 0.23 TCGA-UY-A78P-01 9 13121878 13121878 C T MPDZ Silent p.L1697L 0.16 TCGA-UY-A78P-01 9 13219640 13219640 C G MPDZ Missense_Mutation p.R335T 0.13 deleterious(0.04) probably_damaging(1) TCGA-UY-A78P-01 9 134585023 134585023 C G RAPGEF1 Silent p.L16L 0.25 TCGA-UY-A78P-01 9 18777677 18777677 C T ADAMTSL1 Silent p.T1150T 0.27 TCGA-UY-A78P-01 9 32632346 32632346 G C TAF1L Missense_Mutation p.Q1078E 0.12 deleterious(0) benign(0.23) TCGA-UY-A78P-01 9 32784758 32784758 G C TMEM215 Missense_Mutation p.E193Q 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-UY-A78P-01 9 35562534 35562534 G A FAM166B Silent p.F194F 0.25 TCGA-UY-A78P-01 9 35674019 35674019 C T CA9 Silent p.L21L 0.34 TCGA-UY-A78P-01 9 77282802 77282802 G T RORB Missense_Mutation p.V366F 0.17 deleterious(0) probably_damaging(0.996) TCGA-UY-A78P-01 9 95610201 95610201 G A ZNF484 Nonsense_Mutation p.Q292* 0.30 TCGA-UY-A78P-01 9 96439907 96439907 G A PHF2 Silent p.Q1080Q 0.25 TCGA-UY-A78P-01 X 13635936 13635936 G A EGFL6 Missense_Mutation p.S289N 0.18 tolerated(0.19) benign(0.033) TCGA-UY-A78P-01 X 13727229 13727229 C T RAB9A Silent p.L122L 0.21 TCGA-UY-A78P-01 X 138880875 138880875 C T ATP11C Silent p.L249L 0.08 TCGA-UY-A78P-01 X 151131034 151131034 G C GABRE Missense_Mutation p.L142V 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-UY-A78P-01 X 153459042 153459042 C T OPN1MW Silent p.G296G 0.61 TCGA-UY-A78P-01 X 153459046 153459046 C G OPN1MW Missense_Mutation p.P298A 0.59 tolerated(1) benign(0.002) TCGA-UY-A78P-01 X 34149138 34149138 G C FAM47A Missense_Mutation p.Q420E 0.18 tolerated(0.24) benign(0.011) TCGA-UY-A78P-01 X 44941858 44941858 C G KDM6A Nonsense_Mutation p.S1061* 0.14 TCGA-UY-A78P-01 X 83129608 83129608 C A CYLC1 Missense_Mutation p.P631H 0.15 deleterious(0) probably_damaging(0.984) TCGA-UY-A78P-01 X 91090380 91090380 T - PCDH11X 5'UTR 0.16 TCGA-UY-A8OB-01 10 115380420 115380420 G C NRAP Silent p.V939V 0.32 TCGA-UY-A8OB-01 10 12160822 12160822 A G DHTKD1 Missense_Mutation p.K826R 0.05 tolerated(0.27) benign(0.005) TCGA-UY-A8OB-01 10 122612070 122612070 T C WDR11 Missense_Mutation p.S41P 0.39 deleterious(0.03) possibly_damaging(0.616) TCGA-UY-A8OB-01 10 13228174 13228174 C G MCM10 Missense_Mutation p.S371C 0.21 deleterious(0) probably_damaging(0.975) TCGA-UY-A8OB-01 10 18292087 18292087 T G SLC39A12 Intron 0.33 TCGA-UY-A8OB-01 10 27537958 27537958 T C RP11-85G18.6 Intron 0.21 TCGA-UY-A8OB-01 10 34671569 34671569 G T PARD3 Missense_Mutation p.S433Y 0.43 deleterious(0) benign(0.139) TCGA-UY-A8OB-01 10 37431011 37431011 A G ANKRD30A Missense_Mutation p.M340V 0.20 tolerated(1) benign(0.067) TCGA-UY-A8OB-01 10 43679076 43679076 T C CSGALNACT2 3'UTR 0.20 TCGA-UY-A8OB-01 10 48389453 48389453 G C RBP3 Missense_Mutation p.I475M 0.26 deleterious(0) possibly_damaging(0.651) TCGA-UY-A8OB-01 10 50819507 50819507 A G SLC18A3 Missense_Mutation p.K241E 0.10 deleterious(0) probably_damaging(0.98) TCGA-UY-A8OB-01 10 5784258 5784258 T C FAM208B Silent p.L842L 0.15 TCGA-UY-A8OB-01 10 64967851 64967851 G A JMJD1C Missense_Mutation p.S1193F 0.15 deleterious(0.01) probably_damaging(0.943) TCGA-UY-A8OB-01 10 75051135 75051135 C T TTC18 Silent p.Q766Q 0.31 TCGA-UY-A8OB-01 10 81113542 81113542 A G PPIF Missense_Mutation p.K190E 0.37 tolerated_low_confidence(0.09) benign(0.063) TCGA-UY-A8OB-01 10 95159171 95159171 T C MYOF Missense_Mutation p.E400G 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A8OB-01 10 97380921 97380921 G A ALDH18A1 Missense_Mutation p.A445V 0.35 tolerated(0.27) benign(0.001) TCGA-UY-A8OB-01 11 102962662 102962662 A T DCUN1D5 5'UTR 0.42 TCGA-UY-A8OB-01 11 103074454 103074454 C G DYNC2H1 Missense_Mutation p.Q2754E 0.30 benign(0.001) TCGA-UY-A8OB-01 11 10626034 10626034 C G MRVI1 Missense_Mutation p.R554T 0.35 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 11 10795636 10795636 G C CTR9 Missense_Mutation p.K935N 0.43 tolerated(0.2) benign(0.002) TCGA-UY-A8OB-01 11 108137961 108137961 G C ATM Missense_Mutation p.G844R 0.40 tolerated(0.32) benign(0.001) TCGA-UY-A8OB-01 11 121348870 121348870 C G SORL1 Nonsense_Mutation p.S149* 0.36 TCGA-UY-A8OB-01 11 1272743 1272743 A C MUC5B Missense_Mutation p.K4878T 0.31 unknown(0) TCGA-UY-A8OB-01 11 33117864 33117864 A G CSTF3 Missense_Mutation p.S455P 0.42 deleterious(0.03) possibly_damaging(0.879) TCGA-UY-A8OB-01 11 33308034 33308034 A C HIPK3 Missense_Mutation p.K25T 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A8OB-01 11 47074021 47074021 T C C11orf49 Missense_Mutation p.F78L 0.35 deleterious(0) possibly_damaging(0.641) TCGA-UY-A8OB-01 11 47254498 47254499 - A DDB2 Frame_Shift_Ins p.D198Rfs*9 0.29 TCGA-UY-A8OB-01 11 47261668 47261668 C T ACP2 Silent p.%3D 0.39 TCGA-UY-A8OB-01 11 49221949 49221949 A G FOLH1 Missense_Mutation p.F90S 0.24 tolerated(0.2) possibly_damaging(0.551) TCGA-UY-A8OB-01 11 5565861 5565861 A T OR52H1 Missense_Mutation p.M298K 0.27 deleterious(0) benign(0.024) TCGA-UY-A8OB-01 11 55905105 55905105 G A OR8J3 Silent p.V30V 0.32 TCGA-UY-A8OB-01 11 58125905 58125905 A G OR5B17 Missense_Mutation p.L213S 0.38 tolerated_low_confidence(0.09) possibly_damaging(0.597) TCGA-UY-A8OB-01 11 62362073 62362073 C T MTA2 Missense_Mutation p.R536Q 0.30 tolerated_low_confidence(0.17) benign(0.01) TCGA-UY-A8OB-01 11 62414408 62414408 G C INTS5 3'UTR 0.44 TCGA-UY-A8OB-01 11 63233640 63233640 T A HRASLS5 Missense_Mutation p.E230V 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-UY-A8OB-01 11 64366378 64366378 T C SLC22A12 Silent p.C351C 0.30 TCGA-UY-A8OB-01 11 64595050 64595050 G A CDC42BPG Missense_Mutation p.L1367F 0.58 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 11 64681381 64681381 T C ATG2A Missense_Mutation p.K168E 0.28 deleterious(0.02) benign(0.102) TCGA-UY-A8OB-01 12 100774578 100774578 C T SLC17A8 Silent p.C67C 0.23 TCGA-UY-A8OB-01 12 101433738 101433738 T C ANO4 Silent p.S266S 0.25 TCGA-UY-A8OB-01 12 105151088 105151088 T C CHST11 Missense_Mutation p.F189S 0.31 deleterious(0) probably_damaging(0.994) TCGA-UY-A8OB-01 12 109203535 109203536 CT - SSH1 Splice_Site p.X157_splice 0.23 TCGA-UY-A8OB-01 12 116450611 116450611 G C MED13L Missense_Mutation p.S424C 0.24 deleterious(0.05) unknown(0) TCGA-UY-A8OB-01 12 124270481 124270481 C G DNAH10 Missense_Mutation p.F412L 0.26 benign(0.075) TCGA-UY-A8OB-01 12 124827703 124827703 G A NCOR2 Missense_Mutation p.S1595F 0.30 probably_damaging(0.999) TCGA-UY-A8OB-01 12 130898785 130898785 T C RIMBP2 Missense_Mutation p.E846G 0.28 deleterious(0.03) benign(0.009) TCGA-UY-A8OB-01 12 20870110 20870110 C T SLCO1C1 Silent p.L241L 0.53 TCGA-UY-A8OB-01 12 40010952 40010952 G A ABCD2 Nonsense_Mutation p.Q320* 0.08 TCGA-UY-A8OB-01 12 45567171 45567171 C G PLEKHA8P1 RNA 0.63 TCGA-UY-A8OB-01 12 46316346 46316346 T C SCAF11 Missense_Mutation p.K1382R 0.44 tolerated(0.38) benign(0.049) TCGA-UY-A8OB-01 12 46320208 46320208 C T SCAF11 Silent p.Q1092Q 0.33 TCGA-UY-A8OB-01 12 49580178 49580178 T C TUBA1A Missense_Mutation p.E97G 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-UY-A8OB-01 12 50190039 50190039 A G NCKAP5L Missense_Mutation p.L535P 0.20 tolerated(0.23) benign(0.015) TCGA-UY-A8OB-01 12 53663771 53663771 C T ESPL1 Nonsense_Mutation p.R349* 0.31 TCGA-UY-A8OB-01 12 56030771 56030771 T C OR10P1 Silent p.L32L 0.46 TCGA-UY-A8OB-01 12 56334710 56334710 A G DGKA Silent p.K349K 0.34 TCGA-UY-A8OB-01 12 57406214 57406214 T G TAC3 Missense_Mutation p.Q105H 0.12 tolerated(0.09) possibly_damaging(0.861) TCGA-UY-A8OB-01 12 57424015 57424015 T C MYO1A Missense_Mutation p.K857R 0.34 tolerated(0.28) benign(0.047) TCGA-UY-A8OB-01 12 57985144 57985144 C T PIP4K2C Silent p.F24F 0.27 TCGA-UY-A8OB-01 12 58124378 58124378 T C AGAP2 Silent p.P776P 0.26 TCGA-UY-A8OB-01 12 62959089 62959089 G C MON2 Missense_Mutation p.E1369Q 0.25 tolerated(0.26) benign(0.013) TCGA-UY-A8OB-01 12 6753454 6753454 G T ACRBP Missense_Mutation p.P265T 0.45 tolerated(0.12) possibly_damaging(0.701) TCGA-UY-A8OB-01 12 68707507 68707507 T C MDM1 Missense_Mutation p.K509R 0.26 tolerated(0.27) benign(0.059) TCGA-UY-A8OB-01 12 72335387 72335387 A G TPH2 Silent p.K43K 0.81 TCGA-UY-A8OB-01 12 96707122 96707122 T C CDK17 Missense_Mutation p.I132V 0.30 tolerated(0.72) benign(0) TCGA-UY-A8OB-01 13 103445705 103445705 A G KDELC1 Missense_Mutation p.S220P 0.23 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 13 114287563 114287563 T G TFDP1 Missense_Mutation p.F146C 0.40 deleterious(0) probably_damaging(0.997) TCGA-UY-A8OB-01 13 25457446 25457446 T C CENPJ Missense_Mutation p.K1296E 0.39 deleterious(0) probably_damaging(0.996) TCGA-UY-A8OB-01 13 25458175 25458175 C G CENPJ Missense_Mutation p.Q1250H 0.40 deleterious(0) possibly_damaging(0.497) TCGA-UY-A8OB-01 13 25480492 25480492 C G CENPJ Missense_Mutation p.E562Q 0.26 tolerated(0.07) possibly_damaging(0.795) TCGA-UY-A8OB-01 13 25744214 25744214 T C AMER2 Missense_Mutation p.E515G 0.11 deleterious(0) benign(0.339) TCGA-UY-A8OB-01 13 27333761 27333761 G A GPR12 Silent p.I68I 0.37 TCGA-UY-A8OB-01 13 43798238 43798238 C G ENOX1 Missense_Mutation p.G584A 0.61 deleterious(0) probably_damaging(0.997) TCGA-UY-A8OB-01 13 47355699 47355699 T C ESD Missense_Mutation p.I145V 0.59 tolerated(0.08) benign(0.067) TCGA-UY-A8OB-01 13 86368645 86368649 GAGTG - SLITRK6 Frame_Shift_Del p.T666Sfs*4 0.42 TCGA-UY-A8OB-01 13 98664556 98664556 C - IPO5 Frame_Shift_Del p.K723Nfs*2 0.18 TCGA-UY-A8OB-01 13 99373822 99373823 TC - SLC15A1 Frame_Shift_Del p.R161Ifs*10 0.26 TCGA-UY-A8OB-01 14 105409960 105409960 G C AHNAK2 Missense_Mutation p.A3943G 0.36 possibly_damaging(0.693) TCGA-UY-A8OB-01 14 24687622 24687622 C T NEDD8-MDP1 Missense_Mutation p.E12K 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.874) TCGA-UY-A8OB-01 14 31364787 31364787 C A STRN3 Splice_Site p.X742_splice 0.38 TCGA-UY-A8OB-01 14 50907139 50907139 T G MAP4K5 Missense_Mutation p.T529P 0.44 deleterious(0) possibly_damaging(0.642) TCGA-UY-A8OB-01 14 51080022 51080022 T C ATL1 Missense_Mutation p.S226P 0.37 tolerated(0.58) benign(0.001) TCGA-UY-A8OB-01 14 53003467 53003467 T G TXNDC16 Missense_Mutation p.D121A 0.27 deleterious(0) probably_damaging(0.978) TCGA-UY-A8OB-01 14 55817981 55817981 G A FBXO34 Silent p.L291L 0.37 TCGA-UY-A8OB-01 14 64465676 64465676 A G SYNE2 Missense_Mutation p.N1133S 0.28 benign(0.008) TCGA-UY-A8OB-01 14 65210443 65210443 G A PLEKHG3 3'UTR 0.19 TCGA-UY-A8OB-01 14 74489747 74489747 A G CCDC176 Missense_Mutation p.K62R 0.24 tolerated(0.64) benign(0.012) TCGA-UY-A8OB-01 14 76248832 76248832 C T TTLL5 Missense_Mutation p.H840Y 0.35 tolerated(0.22) possibly_damaging(0.842) TCGA-UY-A8OB-01 15 100340273 100340273 T C DNM1P46 RNA 0.30 TCGA-UY-A8OB-01 15 31320534 31320534 C G TRPM1 Splice_Site p.X1115_splice 0.29 TCGA-UY-A8OB-01 15 33261603 33261603 C G FMN1 Missense_Mutation p.E544Q 0.26 tolerated(0.2) unknown(0) TCGA-UY-A8OB-01 15 40678579 40678591 CACTTCTAAGAGT - KNSTRN Frame_Shift_Del p.T108Sfs*30 0.23 TCGA-UY-A8OB-01 15 42021447 42021447 A C MGA Missense_Mutation p.K1248T 0.26 deleterious(0.03) benign(0.131) TCGA-UY-A8OB-01 15 42742330 42742330 T G ZNF106 Missense_Mutation p.T691P 0.04 tolerated(0.05) benign(0.025) TCGA-UY-A8OB-01 15 43662015 43662015 G A ZSCAN29 Missense_Mutation p.R33W 0.33 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 15 51837962 51837962 C A DMXL2 Missense_Mutation p.G250C 0.28 deleterious(0) probably_damaging(0.991) TCGA-UY-A8OB-01 15 58257920 58257920 T C ALDH1A2 Intron 0.25 TCGA-UY-A8OB-01 15 60715834 60715834 C G NARG2 Nonstop_Mutation p.*983Sext*14 0.24 TCGA-UY-A8OB-01 15 68657094 68657094 A G ITGA11 Missense_Mutation p.M103T 0.20 deleterious(0.03) possibly_damaging(0.721) TCGA-UY-A8OB-01 15 70342399 70342399 T G TLE3 3'UTR 0.24 TCGA-UY-A8OB-01 15 78463808 78463808 A C ACSBG1 Missense_Mutation p.F718C 0.17 deleterious(0.02) probably_damaging(0.95) TCGA-UY-A8OB-01 16 20352462 20352462 G T UMOD Missense_Mutation p.P510T 0.32 deleterious(0.04) probably_damaging(1) TCGA-UY-A8OB-01 16 23703337 23703337 C G ERN2 Missense_Mutation p.V823L 0.33 deleterious(0.02) benign(0.067) TCGA-UY-A8OB-01 16 27518206 27518206 C G GTF3C1 Missense_Mutation p.R505P 0.33 tolerated(0.29) benign(0) TCGA-UY-A8OB-01 16 29994070 29994070 C T TAOK2 Missense_Mutation p.R283W 0.28 deleterious(0) probably_damaging(0.952) TCGA-UY-A8OB-01 16 3727702 3727702 A G TRAP1 Intron 0.43 TCGA-UY-A8OB-01 16 4790260 4790260 A T C16orf71 Missense_Mutation p.E128V 0.39 deleterious(0.01) benign(0.181) TCGA-UY-A8OB-01 16 50667470 50667470 C G NKD1 Silent p.L397L 0.31 TCGA-UY-A8OB-01 16 57113485 57113485 G T NLRC5 Missense_Mutation p.Q1755H 0.30 tolerated(0.18) benign(0.019) TCGA-UY-A8OB-01 16 57153531 57153532 TG - CPNE2 Frame_Shift_Del p.C218* 0.38 TCGA-UY-A8OB-01 16 58614553 58614553 G A CNOT1 Nonsense_Mutation p.R443* 0.27 TCGA-UY-A8OB-01 16 601362 601362 G A CAPN15 Silent p.E709E 0.50 TCGA-UY-A8OB-01 16 67181073 67181073 T C C16orf70 3'UTR 0.34 TCGA-UY-A8OB-01 16 70497655 70497655 T G FUK Missense_Mutation p.L71R 0.53 deleterious(0) probably_damaging(0.996) TCGA-UY-A8OB-01 16 71481955 71481955 T C ZNF23 3'UTR 0.29 TCGA-UY-A8OB-01 16 72130344 72130344 C T DHX38 Silent p.G96G 0.25 TCGA-UY-A8OB-01 16 72992248 72992248 A T ZFHX3 Missense_Mutation p.N599K 0.29 benign(0.185) TCGA-UY-A8OB-01 16 81725418 81725418 T C CMIP Missense_Mutation p.L476S 0.35 deleterious(0) probably_damaging(0.994) TCGA-UY-A8OB-01 17 1494614 1494614 G C SLC43A2 Missense_Mutation p.L294V 0.51 tolerated(0.2) benign(0.192) TCGA-UY-A8OB-01 17 18141407 18141407 T A LLGL1 Missense_Mutation p.L644Q 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-UY-A8OB-01 17 18907196 18907196 C G FAM83G Missense_Mutation p.E53D 0.31 deleterious(0.02) probably_damaging(0.936) TCGA-UY-A8OB-01 17 26459652 26459652 T C NLK Missense_Mutation p.S199P 0.42 deleterious(0.01) probably_damaging(0.947) TCGA-UY-A8OB-01 17 27031199 27031199 C A PROCA1 Missense_Mutation p.V130L 0.37 deleterious(0.02) probably_damaging(0.918) TCGA-UY-A8OB-01 17 30321706 30321706 A G SUZ12 Missense_Mutation p.K521E 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-UY-A8OB-01 17 33680027 33680027 T C SLFN11 Missense_Mutation p.K685R 0.33 tolerated(0.15) benign(0.269) TCGA-UY-A8OB-01 17 34499252 34499252 T C TBC1D3B Silent p.L153L 0.13 TCGA-UY-A8OB-01 17 39137378 39137378 A C KRT40 Missense_Mutation p.L238R 0.26 deleterious(0.01) probably_damaging(1) TCGA-UY-A8OB-01 17 40725493 40725493 C A PSMC3IP Intron 0.20 TCGA-UY-A8OB-01 17 42477235 42477235 C T GPATCH8 Missense_Mutation p.G737E 0.28 tolerated_low_confidence(0.64) probably_damaging(0.994) TCGA-UY-A8OB-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.40 TCGA-UY-A8OB-01 18 55104053 55104053 T A ONECUT2 Missense_Mutation p.S369T 0.25 deleterious(0) probably_damaging(0.957) TCGA-UY-A8OB-01 18 56204574 56204574 C G ALPK2 Missense_Mutation p.E949Q 0.34 deleterious(0.03) possibly_damaging(0.46) TCGA-UY-A8OB-01 19 11152036 11152036 A T SMARCA4 Missense_Mutation p.K1408N 0.07 possibly_damaging(0.881) TCGA-UY-A8OB-01 19 12461868 12461868 T A ZNF442 Silent p.G177G 0.39 TCGA-UY-A8OB-01 19 12576368 12576368 G C ZNF709 Missense_Mutation p.S123C 0.37 tolerated(0.26) benign(0.007) TCGA-UY-A8OB-01 19 2226955 2226955 A G DOT1L Missense_Mutation p.M1479V 0.20 tolerated_low_confidence(0.19) benign(0) TCGA-UY-A8OB-01 19 22847050 22847050 A G ZNF492 Silent p.G193G 0.30 TCGA-UY-A8OB-01 19 22847052 22847052 A G ZNF492 Missense_Mutation p.K194R 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-UY-A8OB-01 19 23545076 23545076 A C ZNF91 Missense_Mutation p.D235E 0.21 tolerated(1) benign(0.001) TCGA-UY-A8OB-01 19 35232642 35232642 G C ZNF181 Missense_Mutation p.L452F 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-UY-A8OB-01 19 35832501 35832501 A G CD22 Missense_Mutation p.E588G 0.16 deleterious(0.04) benign(0.017) TCGA-UY-A8OB-01 19 36050019 36050019 T G ATP4A Silent p.T377T 0.21 TCGA-UY-A8OB-01 19 36333175 36333175 G C NPHS1 Silent p.P838P 0.23 TCGA-UY-A8OB-01 19 39098768 39098768 C G MAP4K1 Missense_Mutation p.R350T 0.20 tolerated(0.49) benign(0.02) TCGA-UY-A8OB-01 19 39421880 39421880 T C MRPS12 5'UTR 0.15 TCGA-UY-A8OB-01 19 41825748 41825748 G A CCDC97 Missense_Mutation p.D258N 0.23 tolerated(0.2) benign(0.032) TCGA-UY-A8OB-01 19 43585314 43585314 T G PSG2 Missense_Mutation p.D50A 0.20 deleterious(0) probably_damaging(0.975) TCGA-UY-A8OB-01 19 46205058 46205058 A G QPCTL Missense_Mutation p.K297E 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-UY-A8OB-01 19 46974055 46974055 T A PNMAL1 Missense_Mutation p.S80C 0.21 deleterious(0) possibly_damaging(0.784) TCGA-UY-A8OB-01 19 47285670 47285670 G C SLC1A5 Missense_Mutation p.A265G 0.16 deleterious(0.02) benign(0.155) TCGA-UY-A8OB-01 19 50166673 50166673 T G IRF3 Missense_Mutation p.E88D 0.09 tolerated(0.26) benign(0.002) TCGA-UY-A8OB-01 19 53270442 53270443 TT - ZNF600 Frame_Shift_Del p.Q189Lfs*2 0.20 TCGA-UY-A8OB-01 19 53678776 53678776 A T ZNF665 Missense_Mutation p.W22R 0.18 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 19 5455685 5455685 C A ZNRF4 Missense_Mutation p.S61R 0.27 tolerated_low_confidence(0.06) benign(0.003) TCGA-UY-A8OB-01 19 54673379 54673379 C T TMC4 Missense_Mutation p.D111N 0.10 tolerated(0.47) benign(0.004) TCGA-UY-A8OB-01 19 55107356 55107356 C G LILRA1 Missense_Mutation p.S305C 0.17 deleterious(0) probably_damaging(0.987) TCGA-UY-A8OB-01 19 55889456 55889456 C T TMEM190 Missense_Mutation p.S140F 0.28 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-UY-A8OB-01 19 56321312 56321312 T C NLRP11 Missense_Mutation p.K222E 0.22 tolerated(0.3) benign(0.138) TCGA-UY-A8OB-01 19 57746385 57746385 G C AURKC Missense_Mutation p.E240Q 0.36 deleterious(0) probably_damaging(0.955) TCGA-UY-A8OB-01 19 58213188 58213188 T A ZNF154 Nonsense_Mutation p.R377* 0.14 TCGA-UY-A8OB-01 19 58570653 58570653 G A ZNF135 Missense_Mutation p.R15H 0.13 tolerated_low_confidence(0.09) unknown(0) TCGA-UY-A8OB-01 19 58983321 58983321 C T ZNF324 Missense_Mutation p.R488C 0.10 deleterious(0) probably_damaging(0.976) TCGA-UY-A8OB-01 19 59010948 59010948 C G SLC27A5 Silent p.S526S 0.11 TCGA-UY-A8OB-01 19 7805691 7805691 G A CD209 3'UTR 0.31 TCGA-UY-A8OB-01 19 8397948 8397948 T A KANK3 Missense_Mutation p.Y629F 0.27 deleterious(0) benign(0.294) TCGA-UY-A8OB-01 19 8431137 8431137 C T ANGPTL4 Nonsense_Mutation p.R161* 0.26 TCGA-UY-A8OB-01 19 9015691 9015691 T C MUC16 Missense_Mutation p.K12711R 0.29 possibly_damaging(0.683) TCGA-UY-A8OB-01 19 9015692 9015692 T A MUC16 Nonsense_Mutation p.K12711* 0.29 TCGA-UY-A8OB-01 19 9408081 9408081 G A ZNF699 Nonsense_Mutation p.Q121* 0.45 TCGA-UY-A8OB-01 1 10179641 10179641 T C UBE4B Missense_Mutation p.L470S 0.25 deleterious(0) possibly_damaging(0.656) TCGA-UY-A8OB-01 1 10511484 10511484 C G CORT Silent p.L50L 0.46 TCGA-UY-A8OB-01 1 113456623 113456623 C A SLC16A1 Nonsense_Mutation p.E465* 0.20 TCGA-UY-A8OB-01 1 115110849 115110849 C T BCAS2 Missense_Mutation p.E194K 0.20 tolerated(0.1) benign(0.003) TCGA-UY-A8OB-01 1 117944854 117944854 A T MAN1A2 Nonsense_Mutation p.K117* 0.26 TCGA-UY-A8OB-01 1 118512702 118512702 T C SPAG17 Missense_Mutation p.K2122E 0.05 deleterious(0.01) possibly_damaging(0.882) TCGA-UY-A8OB-01 1 1233313 1233313 C T ACAP3 Silent p.K339K 0.19 TCGA-UY-A8OB-01 1 144912277 144912277 C T PDE4DIP Silent p.L666L 0.12 TCGA-UY-A8OB-01 1 1500213 1500213 T G SSU72 Missense_Mutation p.Y55S 0.21 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 1 156756405 156756405 C G PRCC Silent p.S174S 0.66 TCGA-UY-A8OB-01 1 158061339 158061339 A G KIRREL Silent p.E488E 0.06 TCGA-UY-A8OB-01 1 15862989 15862989 A C DNAJC16 Missense_Mutation p.K85T 0.38 deleterious(0) probably_damaging(0.986) TCGA-UY-A8OB-01 1 173772368 173772368 A G CENPL Silent p.H278H 0.32 TCGA-UY-A8OB-01 1 180080183 180080183 G A CEP350 Missense_Mutation p.E3081K 0.26 probably_damaging(0.999) TCGA-UY-A8OB-01 1 19470510 19470510 T G UBR4 Missense_Mutation p.T2715P 0.32 probably_damaging(0.931) TCGA-UY-A8OB-01 1 200959321 200959321 A G KIF21B Missense_Mutation p.I992T 0.08 deleterious(0) probably_damaging(0.983) TCGA-UY-A8OB-01 1 202128715 202128715 C G PTPN7 Intron 0.09 TCGA-UY-A8OB-01 1 202914181 202914181 A G ADIPOR1 Missense_Mutation p.C183R 0.38 deleterious(0) probably_damaging(0.995) TCGA-UY-A8OB-01 1 205553193 205553193 A G MFSD4 Silent p.T267T 0.06 TCGA-UY-A8OB-01 1 207111051 207111051 C T PIGR Missense_Mutation p.G145D 0.38 tolerated(0.14) benign(0.354) TCGA-UY-A8OB-01 1 213161980 213161980 A G VASH2 3'UTR 0.29 TCGA-UY-A8OB-01 1 220777454 220777454 A T MARK1 Missense_Mutation p.K157I 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-UY-A8OB-01 1 29639158 29639158 T A PTPRU Missense_Mutation p.F1066Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-UY-A8OB-01 1 43649388 43649388 C G WDR65 Missense_Mutation p.L201V 0.35 deleterious(0) possibly_damaging(0.486) TCGA-UY-A8OB-01 1 44019282 44019282 A G PTPRF Missense_Mutation p.K71E 0.05 deleterious(0.01) benign(0.012) TCGA-UY-A8OB-01 1 45269882 45269882 T A PLK3 Missense_Mutation p.C436S 0.20 tolerated(0.82) benign(0.054) TCGA-UY-A8OB-01 1 45478813 45478813 A G UROD Missense_Mutation p.R47G 0.25 deleterious(0.01) benign(0.003) TCGA-UY-A8OB-01 1 46976766 46976766 C G DMBX1 Missense_Mutation p.L165V 0.16 tolerated(0.53) benign(0.187) TCGA-UY-A8OB-01 1 52824934 52824934 G C CC2D1B Missense_Mutation p.P372A 0.24 tolerated(0.17) benign(0.006) TCGA-UY-A8OB-01 1 52924025 52924025 T C ZCCHC11 Missense_Mutation p.I1140V 0.15 deleterious(0.02) benign(0.316) TCGA-UY-A8OB-01 1 54262441 54262441 G C NDC1 Missense_Mutation p.S502C 0.37 tolerated(0.19) benign(0.008) TCGA-UY-A8OB-01 1 6191772 6191772 C G CHD5 Missense_Mutation p.E1061Q 0.21 deleterious(0.02) probably_damaging(0.978) TCGA-UY-A8OB-01 1 65895677 65895677 T A LEPROT Silent p.T75T 0.24 TCGA-UY-A8OB-01 1 78098107 78098107 T C ZZZ3 Silent p.L311L 0.17 TCGA-UY-A8OB-01 1 87200814 87200814 A G SH3GLB1 Missense_Mutation p.Y259C 0.21 deleterious(0) probably_damaging(0.967) TCGA-UY-A8OB-01 1 9324446 9324446 A G H6PD Missense_Mutation p.N632D 0.24 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 20 13053012 13053012 T C SPTLC3 Missense_Mutation p.F138L 0.26 tolerated(0.17) benign(0.391) TCGA-UY-A8OB-01 20 13740438 13740438 C T ESF1 Missense_Mutation p.E577K 0.32 tolerated(0.1) benign(0.197) TCGA-UY-A8OB-01 20 21492642 21492642 G T NKX2-2 Nonsense_Mutation p.Y247* 0.23 TCGA-UY-A8OB-01 20 2290830 2290830 A G TGM3 Missense_Mutation p.Y63C 0.28 tolerated(0.18) possibly_damaging(0.701) TCGA-UY-A8OB-01 20 2443305 2443305 C T SNRPB Missense_Mutation p.R221Q 0.19 tolerated_low_confidence(0.12) unknown(0) TCGA-UY-A8OB-01 20 42891922 42891922 G T GDAP1L1 Missense_Mutation p.E200D 0.21 tolerated(0.42) benign(0.057) TCGA-UY-A8OB-01 20 43945386 43945386 C G RBPJL Silent p.R447R 0.23 TCGA-UY-A8OB-01 20 44697186 44697186 C T NCOA5 Missense_Mutation p.D153N 0.22 tolerated(0.65) benign(0.136) TCGA-UY-A8OB-01 20 56227370 56227370 C A PMEPA1 Missense_Mutation p.R201S 0.21 tolerated(0.39) benign(0.056) TCGA-UY-A8OB-01 20 61297783 61297783 T C SLCO4A1 Missense_Mutation p.F443S 0.22 deleterious(0) possibly_damaging(0.552) TCGA-UY-A8OB-01 20 62505086 62505086 C G TPD52L2 Silent p.L77L 0.40 TCGA-UY-A8OB-01 21 11039057 11039057 C G BAGE2 RNA 0.10 TCGA-UY-A8OB-01 21 28296419 28296419 A G ADAMTS5 Missense_Mutation p.S916P 0.42 tolerated(0.11) benign(0.065) TCGA-UY-A8OB-01 21 43414169 43414169 G C ZBTB21 Missense_Mutation p.H12Q 0.37 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 21 47969717 47969717 C T DIP2A Silent p.D852D 0.42 TCGA-UY-A8OB-01 22 18209913 18209913 A G BCL2L13 Silent p.T357T 0.22 TCGA-UY-A8OB-01 22 29734998 29734998 G T AP1B1 Nonsense_Mutation p.S715* 0.37 TCGA-UY-A8OB-01 22 29885132 29885132 A T NEFH Silent p.T501T 0.48 TCGA-UY-A8OB-01 22 35660790 35660790 T A HMGXB4 Missense_Mutation p.S137T 0.42 tolerated_low_confidence(0.24) benign(0.057) TCGA-UY-A8OB-01 22 36913461 36913461 C A EIF3D Nonsense_Mutation p.E293* 0.43 TCGA-UY-A8OB-01 22 38509521 38509521 C T PLA2G6 Silent p.K725K 0.75 TCGA-UY-A8OB-01 22 46859774 46859774 A G CELSR1 Missense_Mutation p.F1338S 0.33 deleterious(0.02) possibly_damaging(0.844) TCGA-UY-A8OB-01 22 50278127 50278127 A G ZBED4 Missense_Mutation p.K273E 0.34 tolerated(0.26) benign(0.26) TCGA-UY-A8OB-01 2 10073952 10073953 - ATA TAF1B In_Frame_Ins p.S536delinsYT 0.20 TCGA-UY-A8OB-01 2 106498105 106498105 G A NCK2 Missense_Mutation p.R183H 0.33 tolerated(0.33) benign(0.308) TCGA-UY-A8OB-01 2 111398707 111398707 C T BUB1 Missense_Mutation p.M953I 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-UY-A8OB-01 2 148692964 148692964 C G ORC4 3'UTR 0.47 TCGA-UY-A8OB-01 2 159954194 159954194 A G TANC1 Missense_Mutation p.H36R 0.44 tolerated_low_confidence(0.07) benign(0.096) TCGA-UY-A8OB-01 2 160086683 160086683 A G TANC1 Silent p.L1582L 0.37 TCGA-UY-A8OB-01 2 168104896 168104896 G C XIRP2 Missense_Mutation p.E2332Q 0.30 probably_damaging(0.917) TCGA-UY-A8OB-01 2 178936253 178936253 C T PDE11A Silent p.Q304Q 0.30 TCGA-UY-A8OB-01 2 179451514 179451514 T A TTN Nonsense_Mutation p.K21372* 0.38 TCGA-UY-A8OB-01 2 179451515 179451515 C A TTN Missense_Mutation p.R21371S 0.39 TCGA-UY-A8OB-01 2 181846866 181846866 G A UBE2E3 Missense_Mutation p.E33K 0.56 tolerated(0.27) benign(0.292) TCGA-UY-A8OB-01 2 187626418 187626418 G C FAM171B Missense_Mutation p.R450T 0.45 tolerated(0.49) possibly_damaging(0.463) TCGA-UY-A8OB-01 2 191934453 191934453 T G STAT4 Missense_Mutation p.E170D 0.35 tolerated(0.53) benign(0.003) TCGA-UY-A8OB-01 2 201722792 201722792 A C CLK1 Missense_Mutation p.V232G 0.37 deleterious(0) probably_damaging(0.992) TCGA-UY-A8OB-01 2 20490541 20490541 G T PUM2 Missense_Mutation p.A388D 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.501) TCGA-UY-A8OB-01 2 220397182 220397182 G A ASIC4 Missense_Mutation p.R461Q 0.41 deleterious(0) probably_damaging(0.953) TCGA-UY-A8OB-01 2 224463616 224463616 G A SCG2 Missense_Mutation p.P129S 0.31 tolerated(0.66) benign(0.016) TCGA-UY-A8OB-01 2 227660100 227660100 A G IRS1 Missense_Mutation p.F1119L 0.43 tolerated(0.6) benign(0) TCGA-UY-A8OB-01 2 228882688 228882688 G T SPHKAP Missense_Mutation p.A961E 0.21 deleterious(0) probably_damaging(0.988) TCGA-UY-A8OB-01 2 233925207 233925207 C A INPP5D Missense_Mutation p.H7N 0.27 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 2 24244560 24244560 T A MFSD2B Missense_Mutation p.Y242N 0.16 deleterious(0) possibly_damaging(0.836) TCGA-UY-A8OB-01 2 32828145 32828145 T A BIRC6 Missense_Mutation p.L4689M 0.34 probably_damaging(0.999) TCGA-UY-A8OB-01 2 37076583 37076583 A G STRN 3'UTR 0.16 TCGA-UY-A8OB-01 2 54167126 54167126 T C PSME4 Missense_Mutation p.N171S 0.25 tolerated(0.53) benign(0.001) TCGA-UY-A8OB-01 2 71036485 71036485 C T CLEC4F Missense_Mutation p.R563K 0.30 tolerated_low_confidence(0.99) benign(0.018) TCGA-UY-A8OB-01 2 84518085 84518085 A G FUNDC2P2 RNA 0.27 TCGA-UY-A8OB-01 2 84518335 84518335 G A FUNDC2P2 RNA 0.20 TCGA-UY-A8OB-01 2 86071658 86071658 A T ST3GAL5 Missense_Mutation p.F290Y 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-UY-A8OB-01 2 89082382 89082382 G A ANKRD36BP2 RNA 0.15 TCGA-UY-A8OB-01 2 90193213 90193213 C A IGKV1D-13 Missense_Mutation p.A47E 0.18 deleterious(0.01) benign(0.296) TCGA-UY-A8OB-01 2 96936943 96936943 T G CIAO1 Missense_Mutation p.F292V 0.39 tolerated(0.09) probably_damaging(0.984) TCGA-UY-A8OB-01 3 100467057 100467057 A T TFG Silent p.P295P 0.13 TCGA-UY-A8OB-01 3 111923223 111923224 AA - SLC9C1 Frame_Shift_Del p.S672Tfs*22 0.27 TCGA-UY-A8OB-01 3 118865235 118865235 A G C3orf30 Missense_Mutation p.I67V 0.52 tolerated(0.42) benign(0.037) TCGA-UY-A8OB-01 3 119301181 119301181 C G ADPRH Missense_Mutation p.D55E 0.29 deleterious(0) probably_damaging(0.984) TCGA-UY-A8OB-01 3 119316750 119316750 C G PLA1A 5'UTR 0.38 TCGA-UY-A8OB-01 3 121650524 121650524 T A SLC15A2 Missense_Mutation p.F568Y 0.18 tolerated(0.5) benign(0.011) TCGA-UY-A8OB-01 3 124210218 124210218 T C KALRN Missense_Mutation p.F1544L 0.32 deleterious(0.03) possibly_damaging(0.833) TCGA-UY-A8OB-01 3 124720767 124720767 T C HEG1 Missense_Mutation p.K1149R 0.26 tolerated(0.25) benign(0.046) TCGA-UY-A8OB-01 3 136139966 136139966 A G STAG1 Missense_Mutation p.S693P 0.19 deleterious(0.01) possibly_damaging(0.522) TCGA-UY-A8OB-01 3 136139968 136139968 A G STAG1 Missense_Mutation p.L692P 0.20 tolerated(0.15) possibly_damaging(0.602) TCGA-UY-A8OB-01 3 137484258 137484258 C A SOX14 Missense_Mutation p.T211N 0.20 tolerated(0.19) benign(0.001) TCGA-UY-A8OB-01 3 137781590 137781590 T C DZIP1L 3'UTR 0.26 TCGA-UY-A8OB-01 3 141697507 141697507 C A TFDP2 Missense_Mutation p.G125V 0.22 tolerated(0.06) benign(0.358) TCGA-UY-A8OB-01 3 142681445 142681445 A C PAQR9 Missense_Mutation p.F245C 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-UY-A8OB-01 3 150840605 150840605 A G MED12L Silent p.K80K 0.25 TCGA-UY-A8OB-01 3 150876567 150876567 T C MED12L Missense_Mutation p.L273S 0.18 deleterious(0) possibly_damaging(0.625) TCGA-UY-A8OB-01 3 182853668 182853668 A G LAMP3 Silent p.I318I 0.22 TCGA-UY-A8OB-01 3 183665155 183665155 A G ABCC5 Missense_Mutation p.I1124T 0.37 deleterious(0) possibly_damaging(0.627) TCGA-UY-A8OB-01 3 185407296 185407296 G A IGF2BP2 Missense_Mutation p.S175F 0.33 tolerated(0.14) benign(0.157) TCGA-UY-A8OB-01 3 186257280 186257280 T C CRYGS Missense_Mutation p.E43G 0.38 deleterious(0.01) possibly_damaging(0.54) TCGA-UY-A8OB-01 3 189608585 189608585 G T TP63 Missense_Mutation p.A554S 0.35 tolerated(0.14) possibly_damaging(0.596) TCGA-UY-A8OB-01 3 194062010 194062010 T A CPN2 Missense_Mutation p.E474D 0.19 tolerated(0.54) benign(0.001) TCGA-UY-A8OB-01 3 38357068 38357068 C G SLC22A14 Silent p.L466L 0.26 TCGA-UY-A8OB-01 3 41977387 41977387 T C ULK4 Missense_Mutation p.E95G 0.37 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 3 42727138 42727138 G A KLHL40 Missense_Mutation p.E10K 0.67 deleterious(0) possibly_damaging(0.87) TCGA-UY-A8OB-01 3 48621983 48621983 G A COL7A1 Missense_Mutation p.P1352S 0.37 unknown(0) TCGA-UY-A8OB-01 3 49405912 49405912 C A RHOA Missense_Mutation p.D76Y 0.45 deleterious(0.02) possibly_damaging(0.553) TCGA-UY-A8OB-01 3 49848455 49848455 C T UBA7 Missense_Mutation p.D398N 0.26 tolerated(0.22) benign(0.008) TCGA-UY-A8OB-01 3 50327674 50327674 G A IFRD2 Silent p.S169S 0.22 TCGA-UY-A8OB-01 3 50327675 50327675 G A IFRD2 Missense_Mutation p.S169F 0.22 deleterious(0.01) probably_damaging(0.912) TCGA-UY-A8OB-01 3 52521837 52521837 G C NISCH Missense_Mutation p.E777Q 0.42 deleterious(0.01) probably_damaging(0.972) TCGA-UY-A8OB-01 3 57312500 57312500 C G ASB14 Missense_Mutation p.D446H 0.35 tolerated(0.08) probably_damaging(0.98) TCGA-UY-A8OB-01 3 65464349 65464349 G A MAGI1 Silent p.Y225Y 0.46 TCGA-UY-A8OB-01 4 103822285 103822285 C T SLC9B1 Missense_Mutation p.E513K 0.21 tolerated(0.7) benign(0.003) TCGA-UY-A8OB-01 4 108871606 108871606 A G CYP2U1 3'UTR 0.32 TCGA-UY-A8OB-01 4 123145808 123145808 T G KIAA1109 Silent p.L923L 0.34 TCGA-UY-A8OB-01 4 128949867 128949867 A T C4orf29 Missense_Mutation p.N313Y 0.78 deleterious(0.04) benign(0.389) TCGA-UY-A8OB-01 4 139966226 139966231 AGCTCA - CCRN4L In_Frame_Del p.A299_Q300del 0.27 TCGA-UY-A8OB-01 4 155670140 155670140 G C LRAT Missense_Mutation p.C182S 0.24 deleterious(0) possibly_damaging(0.846) TCGA-UY-A8OB-01 4 169013742 169013742 A G ANXA10 5'UTR 0.42 TCGA-UY-A8OB-01 4 177608622 177608622 T G VEGFC Missense_Mutation p.E288D 0.22 tolerated(0.07) benign(0.054) TCGA-UY-A8OB-01 4 184367240 184367240 G C CDKN2AIP Splice_Site p.X135_splice 0.33 TCGA-UY-A8OB-01 4 36214052 36214052 C T ARAP2 Missense_Mutation p.A367T 0.53 tolerated(0.87) benign(0) TCGA-UY-A8OB-01 4 38117392 38117392 T C TBC1D1 Silent p.L873L 0.35 TCGA-UY-A8OB-01 4 420694 420694 C T ABCA11P RNA 0.26 TCGA-UY-A8OB-01 4 6578377 6578377 C G MAN2B2 Missense_Mutation p.R71G 0.36 deleterious(0) probably_damaging(0.976) TCGA-UY-A8OB-01 4 73957549 73957549 C T ANKRD17 Silent p.L1932L 0.43 TCGA-UY-A8OB-01 5 110409248 110409248 C T TSLP Missense_Mutation p.P86S 0.80 tolerated(0.18) benign(0.077) TCGA-UY-A8OB-01 5 112339742 112339742 C T DCP2 Missense_Mutation p.H304Y 0.49 tolerated_low_confidence(0.06) benign(0.159) TCGA-UY-A8OB-01 5 140554413 140554413 T C PCDHB7 Missense_Mutation p.F666S 0.17 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-UY-A8OB-01 5 145834827 145834827 G C TCERG1 Missense_Mutation p.G90R 0.48 deleterious(0.04) probably_damaging(0.953) TCGA-UY-A8OB-01 5 150701773 150701773 C G SLC36A2 Silent p.L338L 0.57 TCGA-UY-A8OB-01 5 172395499 172395499 A T RPL26L1 Missense_Mutation p.K69M 0.28 deleterious(0) possibly_damaging(0.825) TCGA-UY-A8OB-01 5 3600248 3600248 G C IRX1 Missense_Mutation p.A396P 0.41 tolerated(0.19) possibly_damaging(0.554) TCGA-UY-A8OB-01 5 43040037 43040037 G T ANXA2R Missense_Mutation p.L38I 0.15 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 5 45645667 45645667 G T HCN1 Missense_Mutation p.L157I 0.11 deleterious(0.04) benign(0.192) TCGA-UY-A8OB-01 5 70805493 70805493 G T BDP1 Missense_Mutation p.K858N 0.34 tolerated(0.12) benign(0.19) TCGA-UY-A8OB-01 5 71492598 71492598 C G MAP1B Missense_Mutation p.P1139R 0.27 probably_damaging(0.999) TCGA-UY-A8OB-01 5 74722266 74722266 C T COL4A3BP Missense_Mutation p.R257Q 0.81 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 5 76335496 76335496 G A AGGF1 Silent p.L274L 0.22 TCGA-UY-A8OB-01 5 82815664 82815664 C A VCAN Missense_Mutation p.F513L 0.49 tolerated(1) benign(0.003) TCGA-UY-A8OB-01 5 86690801 86690801 T A CCNH Intron 0.81 TCGA-UY-A8OB-01 5 96139222 96139222 G A ERAP1 Silent p.P136P 0.23 TCGA-UY-A8OB-01 6 117663661 117663661 G A ROS1 Missense_Mutation p.S1524L 0.30 deleterious(0) probably_damaging(0.979) TCGA-UY-A8OB-01 6 129959694 129959694 T G ARHGAP18 Missense_Mutation p.S133R 0.38 tolerated(0.09) probably_damaging(0.979) TCGA-UY-A8OB-01 6 151670523 151670523 G C AKAP12 Missense_Mutation p.E333Q 0.36 tolerated(0.07) benign(0.377) TCGA-UY-A8OB-01 6 24596147 24596147 T G KIAA0319 Missense_Mutation p.K252T 0.18 tolerated(0.62) benign(0.001) TCGA-UY-A8OB-01 6 25727230 25727230 A G HIST1H2BA Missense_Mutation p.K32E 0.46 deleterious_low_confidence(0.02) benign(0.129) TCGA-UY-A8OB-01 6 2623977 2623977 T C C6orf195 Missense_Mutation p.E27G 0.51 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-UY-A8OB-01 6 30309568 30309568 G C TRIM39 Missense_Mutation p.E363D 0.18 tolerated(1) benign(0.06) TCGA-UY-A8OB-01 6 31675274 31675274 T C LY6G6F Missense_Mutation p.V31A 0.38 tolerated(0.44) benign(0.005) TCGA-UY-A8OB-01 6 33154397 33154397 C G COL11A2 Intron 0.19 TCGA-UY-A8OB-01 6 33156831 33156831 G A COL11A2 Silent p.L123L 0.22 TCGA-UY-A8OB-01 6 33283928 33283928 T C ZBTB22 Missense_Mutation p.K256E 0.23 tolerated(0.38) possibly_damaging(0.447) TCGA-UY-A8OB-01 6 36270150 36270150 T C PNPLA1 Missense_Mutation p.S430P 0.25 tolerated_low_confidence(0.16) benign(0.014) TCGA-UY-A8OB-01 6 42224508 42224508 T C TRERF1 Silent p.E846E 0.46 TCGA-UY-A8OB-01 6 42713733 42713733 C G TBCC Missense_Mutation p.E27Q 0.49 deleterious(0.02) benign(0.038) TCGA-UY-A8OB-01 6 43153711 43153711 T C CUL9 Missense_Mutation p.F257L 0.22 deleterious(0.02) probably_damaging(0.965) TCGA-UY-A8OB-01 6 56374502 56374502 T G DST Missense_Mutation p.K3694T 0.35 possibly_damaging(0.72) TCGA-UY-A8OB-01 6 84930886 84930886 A C KIAA1009 Missense_Mutation p.S21A 0.71 deleterious(0.01) probably_damaging(0.995) TCGA-UY-A8OB-01 6 88126385 88126385 A C C6ORF165 Splice_Site p.X158_splice 0.79 TCGA-UY-A8OB-01 7 100345782 100345782 G A ZAN Missense_Mutation p.G349E 0.38 probably_damaging(1) TCGA-UY-A8OB-01 7 116937822 116937822 A G WNT2 Missense_Mutation p.Y233H 0.41 tolerated(0.19) benign(0.038) TCGA-UY-A8OB-01 7 128852186 128852186 C T SMO Missense_Mutation p.P753L 0.32 tolerated_low_confidence(0.27) benign(0) TCGA-UY-A8OB-01 7 129102807 129102807 G A STRIP2 Missense_Mutation p.G493R 0.33 tolerated(0.14) probably_damaging(0.997) TCGA-UY-A8OB-01 7 129348983 129348983 G C NRF1 Silent p.G225G 0.32 TCGA-UY-A8OB-01 7 135377080 135377080 A G SLC13A4 Missense_Mutation p.F404S 0.49 deleterious(0.01) possibly_damaging(0.901) TCGA-UY-A8OB-01 7 13946145 13946145 A G ETV1 Silent p.F340F 0.77 TCGA-UY-A8OB-01 7 143091978 143091978 G C EPHA1 Missense_Mutation p.Q759E 0.25 deleterious(0.04) benign(0.022) TCGA-UY-A8OB-01 7 148701040 148701040 T C PDIA4 Missense_Mutation p.Y595C 0.20 deleterious(0) probably_damaging(0.997) TCGA-UY-A8OB-01 7 150171306 150171306 A T GIMAP8 Nonsense_Mutation p.K297* 0.34 TCGA-UY-A8OB-01 7 155596378 155596378 G A SHH Missense_Mutation p.S202L 0.53 tolerated(0.41) benign(0.146) TCGA-UY-A8OB-01 7 17379146 17379146 T C AHR Missense_Mutation p.F566S 0.05 tolerated(0.17) benign(0.015) TCGA-UY-A8OB-01 7 23313188 23313188 G C GPNMB Missense_Mutation p.G505A 0.51 tolerated(0.15) possibly_damaging(0.844) TCGA-UY-A8OB-01 7 32623485 32623485 A G AVL9 Missense_Mutation p.Q638R 0.47 tolerated(0.13) benign(0.024) TCGA-UY-A8OB-01 7 33028194 33028194 T A FKBP9 Silent p.L323L 0.16 TCGA-UY-A8OB-01 7 42005347 42005347 G A GLI3 Silent p.Y1108Y 0.26 TCGA-UY-A8OB-01 7 42977014 42977014 G A MRPL32 Missense_Mutation p.E136K 0.55 tolerated(0.9) benign(0.023) TCGA-UY-A8OB-01 7 44251928 44251928 T G YKT6 3'UTR 0.31 TCGA-UY-A8OB-01 7 5256811 5256811 T G WIPI2 Missense_Mutation p.I190S 0.56 tolerated(0.42) benign(0.004) TCGA-UY-A8OB-01 7 65751532 65751532 G C TPST1 Missense_Mutation p.V294L 0.24 tolerated(0.11) benign(0.097) TCGA-UY-A8OB-01 7 73646462 73646462 T A RFC2 Nonsense_Mutation p.K347* 0.36 TCGA-UY-A8OB-01 7 81593586 81593586 A C CACNA2D1 Nonsense_Mutation p.Y888* 0.41 TCGA-UY-A8OB-01 7 87908751 87908751 T G STEAP4 Silent p.R448R 0.38 TCGA-UY-A8OB-01 7 99711931 99711931 G A TAF6 Intron 0.42 TCGA-UY-A8OB-01 8 110984995 110984995 C G KCNV1 Silent p.L161L 0.12 TCGA-UY-A8OB-01 8 113871484 113871484 C T CSMD3 Missense_Mutation p.G549S 0.25 deleterious(0.04) possibly_damaging(0.525) TCGA-UY-A8OB-01 8 121013945 121013945 G A DEPTOR Missense_Mutation p.M262I 0.31 tolerated(0.32) benign(0.005) TCGA-UY-A8OB-01 8 125015506 125015506 A G FER1L6 Missense_Mutation p.Q540R 0.12 tolerated(0.07) benign(0.013) TCGA-UY-A8OB-01 8 142176343 142176343 C T DENND3 Silent p.S456S 0.22 TCGA-UY-A8OB-01 8 142178608 142178608 C G DENND3 Missense_Mutation p.F673L 0.18 deleterious(0) probably_damaging(0.998) TCGA-UY-A8OB-01 8 143996274 143996274 G A CYP11B2 Missense_Mutation p.P216S 0.63 deleterious(0.02) possibly_damaging(0.588) TCGA-UY-A8OB-01 8 38271525 38271525 C G FGFR1 Missense_Mutation p.D766H 0.81 deleterious(0) probably_damaging(0.995) TCGA-UY-A8OB-01 8 51415380 51415380 G T SNTG1 Missense_Mutation p.V136L 0.21 deleterious(0.02) benign(0.311) TCGA-UY-A8OB-01 8 56910944 56910944 A C LYN Missense_Mutation p.I364L 0.23 deleterious(0.02) possibly_damaging(0.758) TCGA-UY-A8OB-01 8 56910945 56910945 T A LYN Missense_Mutation p.I364N 0.23 deleterious(0) probably_damaging(0.994) TCGA-UY-A8OB-01 8 75275250 75275250 T C GDAP1 Missense_Mutation p.V219A 0.40 deleterious(0) possibly_damaging(0.754) TCGA-UY-A8OB-01 8 86027662 86027662 T C LRRCC1 Missense_Mutation p.L258S 0.34 tolerated(0.16) benign(0.01) TCGA-UY-A8OB-01 8 95158244 95158244 A G CDH17 Silent p.D693D 0.64 TCGA-UY-A8OB-01 8 95392458 95392458 T A RAD54B Missense_Mutation p.K721I 0.26 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 9 100222920 100222920 A C TDRD7 Missense_Mutation p.E439A 0.11 tolerated(0.08) benign(0.05) TCGA-UY-A8OB-01 9 100222922 100222922 A G TDRD7 Missense_Mutation p.S440G 0.11 tolerated(0.28) benign(0.005) TCGA-UY-A8OB-01 9 100862390 100862390 T C TRIM14 Silent p.L120L 0.53 TCGA-UY-A8OB-01 9 103090114 103090114 T C TEX10 Missense_Mutation p.K586E 0.32 tolerated(0.15) benign(0.359) TCGA-UY-A8OB-01 9 109687526 109687526 C G ZNF462 Missense_Mutation p.P445A 0.55 possibly_damaging(0.822) TCGA-UY-A8OB-01 9 125145851 125145851 C G PTGS1 Missense_Mutation p.R276G 0.21 deleterious(0.02) benign(0.04) TCGA-UY-A8OB-01 9 126136070 126136070 A G CRB2 Missense_Mutation p.E1087G 0.31 tolerated(0.3) probably_damaging(0.913) TCGA-UY-A8OB-01 9 127618540 127618540 T A WDR38 Missense_Mutation p.L143I 0.24 deleterious(0) possibly_damaging(0.831) TCGA-UY-A8OB-01 9 134165467 134165467 C A PPAPDC3 Missense_Mutation p.P28H 0.32 deleterious(0) probably_damaging(0.947) TCGA-UY-A8OB-01 9 135975776 135975776 C T RALGDS Intron 0.12 TCGA-UY-A8OB-01 9 136256517 136256517 G C C9orf96 Silent p.L176L 0.27 TCGA-UY-A8OB-01 9 139906744 139906744 T C ABCA2 Missense_Mutation p.K1758E 0.30 tolerated(0.65) benign(0.287) TCGA-UY-A8OB-01 9 139909368 139909368 G T ABCA2 Missense_Mutation p.F1293L 0.57 tolerated(0.07) probably_damaging(0.973) TCGA-UY-A8OB-01 9 139975312 139975312 C G UAP1L1 Silent p.L450L 0.44 TCGA-UY-A8OB-01 9 140083666 140083666 T C SSNA1 Silent p.S67S 0.25 TCGA-UY-A8OB-01 9 140087130 140087130 A G TPRN Missense_Mutation p.F580S 0.30 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 9 14722421 14722421 C G CER1 Missense_Mutation p.G84R 0.28 tolerated(0.56) probably_damaging(0.909) TCGA-UY-A8OB-01 9 33468519 33468519 G C NOL6 Nonsense_Mutation p.S398* 0.31 TCGA-UY-A8OB-01 9 5921972 5921972 T C KIAA2026 Missense_Mutation p.T1342A 0.42 tolerated(0.14) benign(0.06) TCGA-UY-A8OB-01 9 93606295 93606295 T C SYK Missense_Mutation p.Y39H 0.58 deleterious(0) probably_damaging(0.996) TCGA-UY-A8OB-01 X 108641917 108641917 C A GUCY2F Missense_Mutation p.W712C 0.49 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OB-01 X 111090395 111090395 C A TRPC5 Missense_Mutation p.E549D 0.91 tolerated(0.19) possibly_damaging(0.472) TCGA-UY-A8OB-01 X 112058693 112058693 C T AMOT Missense_Mutation p.A429T 0.41 unknown(0) TCGA-UY-A8OB-01 X 135863105 135863105 G A ARHGEF6 5'UTR 0.83 TCGA-UY-A8OB-01 X 1428499 1428499 G T CSF2RA 3'UTR 0.15 TCGA-UY-A8OB-01 X 153420204 153420204 C G OPN1LW Missense_Mutation p.A245G 0.35 deleterious(0.01) possibly_damaging(0.803) TCGA-UY-A8OB-01 X 153459033 153459033 C A OPN1MW Silent p.A293A 0.36 TCGA-UY-A8OB-01 X 2793878 2793878 C G GYG2 Missense_Mutation p.P387A 0.30 tolerated(0.17) benign(0.01) TCGA-UY-A8OB-01 X 29973250 29973250 T C IL1RAPL1 Silent p.D468D 0.31 TCGA-UY-A8OB-01 X 55784734 55784734 G C RRAGB Silent p.L361L 0.48 TCGA-UY-A8OB-01 X 65824289 65824289 T A EDA2R Missense_Mutation p.K109M 0.35 deleterious(0) possibly_damaging(0.878) TCGA-UY-A8OB-01 X 84519436 84519436 G C ZNF711 Missense_Mutation p.G260R 0.35 deleterious(0) probably_damaging(1) TCGA-UY-A8OB-01 X 96854270 96854270 T C DIAPH2 Missense_Mutation p.L1087S 0.25 deleterious(0) probably_damaging(0.964) TCGA-UY-A8OC-01 10 104636731 104636731 C T AS3MT Silent p.F183F 0.45 TCGA-UY-A8OC-01 10 104852976 104852976 G C NT5C2 Nonsense_Mutation p.S360* 0.39 TCGA-UY-A8OC-01 10 115343981 115343981 G C HABP2 Missense_Mutation p.D438H 0.37 deleterious(0.01) benign(0.114) TCGA-UY-A8OC-01 10 118897463 118897463 C T VAX1 Silent p.A35A 0.26 TCGA-UY-A8OC-01 10 24833291 24833291 G A KIAA1217 Missense_Mutation p.D1698N 0.14 tolerated(0.07) benign(0.053) TCGA-UY-A8OC-01 10 34558670 34558670 G A PARD3 Nonsense_Mutation p.Q1115* 0.26 TCGA-UY-A8OC-01 10 63212750 63212750 C T TMEM26 Silent p.V30V 0.35 TCGA-UY-A8OC-01 10 63212855 63212855 C G TMEM26 5'UTR 0.42 TCGA-UY-A8OC-01 11 67209225 67209225 G A CORO1B Nonsense_Mutation p.R145* 0.13 TCGA-UY-A8OC-01 11 83676491 83676491 T C DLG2 Silent p.E359E 0.12 TCGA-UY-A8OC-01 11 88780659 88780659 G A GRM5 Missense_Mutation p.R128C 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-UY-A8OC-01 11 95724857 95724857 C T MAML2 Missense_Mutation p.G724S 0.36 unknown(0) TCGA-UY-A8OC-01 12 118619296 118619296 C T TAOK3 Silent p.L482L 0.13 TCGA-UY-A8OC-01 12 120204927 120204927 C T CIT Silent p.L756L 0.17 TCGA-UY-A8OC-01 12 12317235 12317235 C T LRP6 Missense_Mutation p.R675Q 0.15 deleterious(0.01) possibly_damaging(0.872) TCGA-UY-A8OC-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.79 deleterious(0) benign(0.361) TCGA-UY-A8OC-01 12 25656688 25656688 G C IFLTD1 3'UTR 0.06 TCGA-UY-A8OC-01 12 25656707 25656707 G A IFLTD1 Missense_Mutation p.S406L 0.05 tolerated_low_confidence(0.26) unknown(0) TCGA-UY-A8OC-01 12 32458634 32458634 G A BICD1 Missense_Mutation p.E195K 0.15 deleterious(0) possibly_damaging(0.79) TCGA-UY-A8OC-01 12 49359830 49359830 G A WNT10B 3'UTR 0.53 TCGA-UY-A8OC-01 12 53207733 53207733 C G KRT4 Missense_Mutation p.G37A 0.19 tolerated(0.17) benign(0.036) TCGA-UY-A8OC-01 12 55524528 55524528 A T OR9K2 Nonsense_Mutation p.K326* 0.42 TCGA-UY-A8OC-01 12 55758899 55758899 G C OR6C75 Missense_Mutation p.R2T 0.20 deleterious_low_confidence(0.02) benign(0.036) TCGA-UY-A8OC-01 12 58158688 58158688 C T CYP27B1 Missense_Mutation p.R271Q 0.21 deleterious(0.02) possibly_damaging(0.902) TCGA-UY-A8OC-01 12 66849292 66849292 C G GRIP1 Silent p.L365L 0.18 TCGA-UY-A8OC-01 12 72017174 72017174 C G ZFC3H1 Missense_Mutation p.K1570N 0.34 deleterious(0.03) possibly_damaging(0.65) TCGA-UY-A8OC-01 13 111862258 111862258 C T ARHGEF7 Missense_Mutation p.S147L 0.51 deleterious_low_confidence(0.02) possibly_damaging(0.54) TCGA-UY-A8OC-01 13 114523952 114523952 C T GAS6 Missense_Mutation p.R641H 0.23 tolerated(0.77) benign(0.013) TCGA-UY-A8OC-01 13 37014218 37014218 G A CCNA1 Silent p.L332L 0.19 TCGA-UY-A8OC-01 13 42882616 42882616 C T AKAP11 Missense_Mutation p.S1715L 0.18 tolerated(0.09) benign(0.065) TCGA-UY-A8OC-01 14 21991457 21991457 G C SALL2 Nonsense_Mutation p.S802* 0.38 TCGA-UY-A8OC-01 14 24033063 24033063 C T AP1G2 Missense_Mutation p.R365K 0.56 deleterious(0.02) benign(0.277) TCGA-UY-A8OC-01 14 24113755 24113755 G T DHRS2 Silent p.V226V 0.21 TCGA-UY-A8OC-01 14 58949251 58949251 G A KIAA0586 Missense_Mutation p.A1042T 0.11 tolerated(0.08) benign(0.02) TCGA-UY-A8OC-01 15 50474940 50474940 T A SLC27A2 Missense_Mutation p.C106S 0.44 tolerated(0.13) benign(0.065) TCGA-UY-A8OC-01 16 1279662 1279662 C A TPSB2 Silent p.V46V 0.21 TCGA-UY-A8OC-01 16 19067875 19067875 C T TMC7 Missense_Mutation p.S628L 0.47 deleterious(0) probably_damaging(0.975) TCGA-UY-A8OC-01 16 27244381 27244381 T C NSMCE1 Missense_Mutation p.R142G 0.20 tolerated(0.07) benign(0.188) TCGA-UY-A8OC-01 16 30593931 30593931 G A ZNF785 Missense_Mutation p.P390S 0.28 deleterious(0) possibly_damaging(0.857) TCGA-UY-A8OC-01 16 30594111 30594111 G C ZNF785 Missense_Mutation p.H330D 0.32 deleterious(0) possibly_damaging(0.869) TCGA-UY-A8OC-01 16 30594114 30594114 T A ZNF785 Missense_Mutation p.S329C 0.29 deleterious(0.01) probably_damaging(0.971) TCGA-UY-A8OC-01 16 30594160 30594160 G A ZNF785 Silent p.P313P 0.31 TCGA-UY-A8OC-01 16 46696229 46696229 C T VPS35 Missense_Mutation p.D665N 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-UY-A8OC-01 17 26861777 26861777 C A FOXN1 Silent p.L396L 0.25 TCGA-UY-A8OC-01 17 27901735 27901735 T C GIT1 Silent p.R766R 0.31 TCGA-UY-A8OC-01 17 35616444 35616444 C T ACACA Silent p.V446V 0.28 TCGA-UY-A8OC-01 17 3663576 3663576 C T ITGAE Missense_Mutation p.E202K 0.38 deleterious(0) probably_damaging(0.94) TCGA-UY-A8OC-01 17 38644824 38644824 C T TNS4 Silent p.V279V 0.36 TCGA-UY-A8OC-01 17 53042125 53042125 A G COX11 Missense_Mutation p.I152T 0.27 deleterious(0) possibly_damaging(0.555) TCGA-UY-A8OC-01 17 59115312 59115312 G A BCAS3 Missense_Mutation p.E624K 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A8OC-01 18 21119332 21119332 G C NPC1 Missense_Mutation p.F966L 0.64 deleterious(0) possibly_damaging(0.831) TCGA-UY-A8OC-01 18 9557344 9557344 C A PPP4R1 Nonsense_Mutation p.E689* 0.62 TCGA-UY-A8OC-01 19 16545481 16545481 G A EPS15L1 Intron 0.50 TCGA-UY-A8OC-01 19 16591475 16591475 C T CALR3 Missense_Mutation p.D321N 0.27 deleterious(0.04) benign(0.046) TCGA-UY-A8OC-01 19 3612283 3612283 G A CACTIN Missense_Mutation p.R639W 0.32 deleterious(0) probably_damaging(0.996) TCGA-UY-A8OC-01 19 38600958 38600958 C G SIPA1L3 Missense_Mutation p.S742C 0.33 deleterious(0) probably_damaging(1) TCGA-UY-A8OC-01 19 40886492 40886492 G A HIPK4 Missense_Mutation p.S469L 0.31 tolerated_low_confidence(0.09) benign(0.002) TCGA-UY-A8OC-01 19 41066224 41066224 G T SPTBN4 Missense_Mutation p.A1944S 0.29 tolerated(0.05) possibly_damaging(0.893) TCGA-UY-A8OC-01 19 4361555 4361555 C T SH3GL1 3'UTR 0.29 TCGA-UY-A8OC-01 19 4554435 4554435 G C SEMA6B Missense_Mutation p.R246G 0.30 deleterious(0) probably_damaging(0.998) TCGA-UY-A8OC-01 19 53209654 53209654 G A ZNF611 Silent p.L218L 0.29 TCGA-UY-A8OC-01 19 6591032 6591032 C T CD70 5'UTR 0.20 TCGA-UY-A8OC-01 19 8841579 8841579 C T OR2Z1 Silent p.L63L 0.34 TCGA-UY-A8OC-01 1 110038816 110038816 C T CYB561D1 Missense_Mutation p.P231S 0.31 tolerated(0.28) possibly_damaging(0.559) TCGA-UY-A8OC-01 1 120458837 120458837 T A NOTCH2 Missense_Mutation p.I2170F 0.12 deleterious(0.04) possibly_damaging(0.489) TCGA-UY-A8OC-01 1 145698944 145698945 - G CD160 Intron 0.13 TCGA-UY-A8OC-01 1 158911964 158911964 G A PYHIN1 Silent p.L259L 0.24 TCGA-UY-A8OC-01 1 161682000 161682000 G C FCRLA Missense_Mutation p.R282T 0.46 tolerated(0.13) possibly_damaging(0.71) TCGA-UY-A8OC-01 1 17314898 17314898 G A ATP13A2 Missense_Mutation p.S894L 0.24 deleterious(0) possibly_damaging(0.83) TCGA-UY-A8OC-01 1 179312047 179312047 C T SOAT1 Missense_Mutation p.P304S 0.34 deleterious(0) probably_damaging(1) TCGA-UY-A8OC-01 1 201982162 201982163 - C ELF3 Frame_Shift_Ins p.D230Rfs*5 0.42 TCGA-UY-A8OC-01 1 223177786 223177786 T C DISP1 Missense_Mutation p.I1016T 0.17 deleterious(0) probably_damaging(0.996) TCGA-UY-A8OC-01 1 228111886 228111886 C T WNT9A Missense_Mutation p.D190N 0.16 deleterious(0) probably_damaging(0.94) TCGA-UY-A8OC-01 1 43316849 43316849 C G ZNF691 Missense_Mutation p.H105D 0.37 deleterious(0.01) benign(0.394) TCGA-UY-A8OC-01 1 65871755 65871755 C T DNAJC6 Silent p.N810N 0.27 TCGA-UY-A8OC-01 1 67861429 67861429 G C IL12RB2 Missense_Mutation p.S749T 0.14 tolerated(0.05) benign(0.269) TCGA-UY-A8OC-01 1 71873105 71873105 A C NEGR1 3'UTR 0.23 TCGA-UY-A8OC-01 1 97278826 97278826 C T PTBP2 Intron 0.17 TCGA-UY-A8OC-01 20 20013982 20013982 C G NAA20 3'UTR 0.25 TCGA-UY-A8OC-01 20 21492555 21492555 C T NKX2-2 3'UTR 0.25 TCGA-UY-A8OC-01 20 47649771 47649783 GAATGTTCAGCAT - ARFGEF2 3'UTR 0.40 TCGA-UY-A8OC-01 20 60511982 60511982 G A CDH4 Missense_Mutation p.G911E 0.41 deleterious(0) probably_damaging(1) TCGA-UY-A8OC-01 21 43536067 43536067 G A UMODL1 Missense_Mutation p.R944Q 0.45 tolerated(1) benign(0.417) TCGA-UY-A8OC-01 22 21224730 21224730 G A SNAP29 Missense_Mutation p.V115M 0.26 tolerated(0.14) benign(0.051) TCGA-UY-A8OC-01 22 26839208 26839208 G A ASPHD2 3'UTR 0.28 TCGA-UY-A8OC-01 22 41916229 41916229 G A ACO2 Missense_Mutation p.E363K 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-UY-A8OC-01 2 17697717 17697717 C T RAD51AP2 Missense_Mutation p.E656K 0.27 tolerated(0.08) benign(0.067) TCGA-UY-A8OC-01 2 204000811 204000811 T C NBEAL1 Missense_Mutation p.S1380P 0.20 deleterious(0.03) benign(0.005) TCGA-UY-A8OC-01 2 21242626 21242626 C T APOB Missense_Mutation p.A990T 0.37 benign(0.125) TCGA-UY-A8OC-01 2 223096865 223096865 G C PAX3 Missense_Mutation p.H242D 0.46 deleterious(0) probably_damaging(0.998) TCGA-UY-A8OC-01 2 238266486 238266486 C T COL6A3 Missense_Mutation p.G2171R 0.10 probably_damaging(0.993) TCGA-UY-A8OC-01 2 28635340 28635340 C T FOSL2 3'UTR 0.29 TCGA-UY-A8OC-01 2 97464926 97464926 G A CNNM4 Missense_Mutation p.R605Q 0.22 tolerated(0.24) benign(0.372) TCGA-UY-A8OC-01 3 28520380 28520380 C T ZCWPW2 Missense_Mutation p.H190Y 0.15 tolerated(1) benign(0.169) TCGA-UY-A8OC-01 3 44894180 44894180 C T KIF15 Missense_Mutation p.R1374C 0.45 deleterious(0) probably_damaging(0.912) TCGA-UY-A8OC-01 3 52256187 52256187 G A TLR9 Silent p.F869F 0.64 TCGA-UY-A8OC-01 3 55922478 55922478 C T ERC2 Missense_Mutation p.A835T 0.51 tolerated(0.69) benign(0.02) TCGA-UY-A8OC-01 3 56657138 56657138 T C FAM208A 3'UTR 0.50 TCGA-UY-A8OC-01 4 153896130 153896130 G C FHDC1 Missense_Mutation p.E563Q 0.53 deleterious(0.02) possibly_damaging(0.641) TCGA-UY-A8OC-01 4 153896325 153896325 G T FHDC1 Nonsense_Mutation p.E628* 0.42 TCGA-UY-A8OC-01 4 153897435 153897435 G A FHDC1 Missense_Mutation p.E998K 0.41 deleterious(0.01) possibly_damaging(0.849) TCGA-UY-A8OC-01 4 153897476 153897476 G T FHDC1 Missense_Mutation p.E1011D 0.31 tolerated(0.35) benign(0.004) TCGA-UY-A8OC-01 4 54179818 54179818 T C SCFD2 Missense_Mutation p.I374V 0.41 tolerated(0.19) probably_damaging(0.99) TCGA-UY-A8OC-01 4 87693993 87693993 C G PTPN13 Missense_Mutation p.S1749C 0.26 tolerated(0.22) benign(0.005) TCGA-UY-A8OC-01 4 89334354 89334354 G A HERC6 Silent p.K498K 0.43 TCGA-UY-A8OC-01 5 113740295 113740295 C A KCNN2 Missense_Mutation p.S248Y 0.24 deleterious(0) probably_damaging(0.974) TCGA-UY-A8OC-01 5 139193232 139193232 G A PSD2 Missense_Mutation p.R237H 0.22 tolerated(0.24) benign(0.002) TCGA-UY-A8OC-01 5 140554423 140554423 C T PCDHB7 Silent p.P669P 0.17 TCGA-UY-A8OC-01 5 142675067 142675067 C T NR3C1 Missense_Mutation p.E662K 0.17 deleterious(0) probably_damaging(0.989) TCGA-UY-A8OC-01 5 152870321 152870321 A T GRIA1 5'Flank 0.19 TCGA-UY-A8OC-01 6 107088298 107088298 G C QRSL1 Missense_Mutation p.K33N 0.60 tolerated(0.2) possibly_damaging(0.47) TCGA-UY-A8OC-01 6 160952904 160952904 G C LPA Missense_Mutation p.L1994V 0.59 deleterious(0.03) benign(0.102) TCGA-UY-A8OC-01 7 107738866 107738866 C T LAMB4 Missense_Mutation p.D448N 0.51 tolerated(0.27) benign(0.322) TCGA-UY-A8OC-01 7 123302268 123302268 G A LMOD2 Missense_Mutation p.D210N 0.41 tolerated(0.12) probably_damaging(0.998) TCGA-UY-A8OC-01 7 131825549 131825549 G A PLXNA4 Silent p.V1749V 0.48 TCGA-UY-A8OC-01 7 141673199 141673199 C T TAS2R38 Missense_Mutation p.M97I 0.17 tolerated(0.51) benign(0.008) TCGA-UY-A8OC-01 7 141673289 141673289 C T TAS2R38 Silent p.L67L 0.21 TCGA-UY-A8OC-01 7 142021140 142021140 G A TRBV5-1 Silent p.L40L 0.35 TCGA-UY-A8OC-01 7 16734572 16734572 G A BZW2 Silent p.R255R 0.09 TCGA-UY-A8OC-01 7 84628805 84628805 C T SEMA3D Missense_Mutation p.R762Q 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-UY-A8OC-01 8 133726439 133726439 C T TMEM71 Missense_Mutation p.A240T 0.12 tolerated(0.09) benign(0.133) TCGA-UY-A8OC-01 8 135615163 135615163 G C ZFAT Missense_Mutation p.Q267E 0.55 deleterious(0.04) probably_damaging(0.93) TCGA-UY-A8OC-01 8 144943483 144943483 C G EPPK1 Silent p.L1313L 0.65 TCGA-UY-A8OC-01 8 48885598 48885598 G C MCM4 Missense_Mutation p.E704Q 0.79 tolerated(0.21) benign(0.261) TCGA-UY-A8OC-01 9 5922102 5922102 T A KIAA2026 Silent p.P1298P 0.69 TCGA-UY-A8OC-01 9 94493314 94493314 T C ROR2 Missense_Mutation p.D354G 0.58 tolerated(0.16) benign(0.021) TCGA-UY-A8OC-01 X 14918703 14918703 G C MOSPD2 Missense_Mutation p.D162H 0.57 deleterious(0) possibly_damaging(0.9) TCGA-UY-A8OC-01 X 14929407 14929407 A G MOSPD2 Missense_Mutation p.T251A 0.32 deleterious(0.02) benign(0.313) TCGA-UY-A8OC-01 X 96684700 96684700 G A DIAPH2 Missense_Mutation p.G1066D 0.67 deleterious(0) probably_damaging(1) TCGA-UY-A8OD-01 10 14912623 14912623 G C HSPA14 Missense_Mutation p.E470Q 0.35 tolerated(0.09) probably_damaging(0.927) TCGA-UY-A8OD-01 10 33510789 33510789 G C NRP1 Silent p.L380L 0.27 TCGA-UY-A8OD-01 10 71883796 71883796 C T AIFM2 Silent p.V15V 0.25 TCGA-UY-A8OD-01 10 88911952 88911952 G A FAM35A Missense_Mutation p.G281R 0.15 tolerated(0.38) benign(0.132) TCGA-UY-A8OD-01 10 99212661 99212661 G A ZDHHC16 Silent p.L179L 0.36 TCGA-UY-A8OD-01 11 108128298 108128298 C T ATM Nonsense_Mutation p.Q781* 0.54 TCGA-UY-A8OD-01 11 1271405 1271405 C T MUC5B Missense_Mutation p.A4432V 0.39 benign(0.045) TCGA-UY-A8OD-01 11 67205097 67205097 G A PTPRCAP 5'UTR 0.08 TCGA-UY-A8OD-01 11 88300616 88300616 T A GRM5 Silent p.G745G 0.34 TCGA-UY-A8OD-01 12 100995493 100995493 C G GAS2L3 Missense_Mutation p.Q89E 0.21 deleterious(0.02) benign(0.19) TCGA-UY-A8OD-01 12 107372521 107372521 G A MTERFD3 5'UTR 0.17 TCGA-UY-A8OD-01 12 11150097 11150097 C G TAS2R20 Missense_Mutation p.K126N 0.19 tolerated(0.21) benign(0.034) TCGA-UY-A8OD-01 12 114841701 114841701 C T TBX5 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-UY-A8OD-01 12 121880463 121880463 C T KDM2B Silent p.P927P 0.27 TCGA-UY-A8OD-01 12 22063108 22063108 A G ABCC9 Missense_Mutation p.W435R 0.42 deleterious(0) probably_damaging(0.985) TCGA-UY-A8OD-01 13 25744231 25744231 C T AMER2 Silent p.P509P 0.10 TCGA-UY-A8OD-01 14 20295971 20295971 C T OR4N2 Missense_Mutation p.R122C 0.45 deleterious(0.02) benign(0.057) TCGA-UY-A8OD-01 14 23567312 23567312 A G C14orf119 3'UTR 0.09 TCGA-UY-A8OD-01 14 45705106 45705106 T C MIS18BP1 Missense_Mutation p.E420G 0.07 deleterious(0) probably_damaging(0.961) TCGA-UY-A8OD-01 14 45705107 45705107 C T MIS18BP1 Missense_Mutation p.E420K 0.06 tolerated(0.09) possibly_damaging(0.847) TCGA-UY-A8OD-01 14 69350932 69350932 C A ACTN1 Nonsense_Mutation p.E530* 0.33 TCGA-UY-A8OD-01 14 76905906 76905906 C T ESRRB Silent p.T70T 0.42 TCGA-UY-A8OD-01 15 23811699 23811699 G C MKRN3 Missense_Mutation p.S257T 0.33 deleterious(0.02) benign(0.272) TCGA-UY-A8OD-01 15 37109940 37109940 C T CSNK1A1P1 RNA 0.46 TCGA-UY-A8OD-01 15 41817301 41817301 C T RPAP1 Missense_Mutation p.E655K 0.21 deleterious(0.02) benign(0.118) TCGA-UY-A8OD-01 15 41817344 41817344 C G RPAP1 Missense_Mutation p.L640F 0.13 deleterious(0.03) benign(0.024) TCGA-UY-A8OD-01 15 43461838 43461838 C G TMEM62 Silent p.L448L 0.22 TCGA-UY-A8OD-01 15 57731203 57731203 C G CGNL1 Missense_Mutation p.P336A 0.51 deleterious(0) probably_damaging(1) TCGA-UY-A8OD-01 15 66250042 66250042 C G MEGF11 Missense_Mutation p.G377A 0.55 deleterious(0) probably_damaging(0.979) TCGA-UY-A8OD-01 15 86312268 86312268 T C KLHL25 Silent p.A258A 0.22 TCGA-UY-A8OD-01 15 91337563 91337563 T C BLM Silent p.S1062S 0.20 TCGA-UY-A8OD-01 15 91488197 91488197 G A UNC45A Missense_Mutation p.R368H 0.07 tolerated(0.13) benign(0.064) TCGA-UY-A8OD-01 16 19722723 19722723 C T KNOP1 Missense_Mutation p.G320S 0.38 deleterious(0.02) probably_damaging(0.909) TCGA-UY-A8OD-01 16 28847370 28847370 G T ATXN2L Silent p.A1004A 0.21 TCGA-UY-A8OD-01 16 30124837 30124837 C A GDPD3 5'UTR 0.43 TCGA-UY-A8OD-01 16 55525748 55525748 G A MMP2 Missense_Mutation p.G406S 0.10 deleterious(0) probably_damaging(0.995) TCGA-UY-A8OD-01 16 70176210 70176210 C T PDPR Silent p.Y463Y 0.14 TCGA-UY-A8OD-01 17 27031151 27031151 C T PROCA1 Missense_Mutation p.E146K 0.28 deleterious(0.02) possibly_damaging(0.648) TCGA-UY-A8OD-01 17 40844621 40844621 C T CNTNAP1 Missense_Mutation p.R879W 0.55 tolerated(0.07) benign(0.115) TCGA-UY-A8OD-01 17 60503752 60503752 G A METTL2A Missense_Mutation p.E99K 0.37 deleterious(0) probably_damaging(0.964) TCGA-UY-A8OD-01 17 68129049 68129049 A T KCNJ16 Missense_Mutation p.D274V 0.16 deleterious(0.01) possibly_damaging(0.868) TCGA-UY-A8OD-01 18 25585908 25585908 A G CDH2 Missense_Mutation p.I251T 0.40 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OD-01 18 32825231 32825231 G C ZNF397 Missense_Mutation p.E188Q 0.33 tolerated(0.29) benign(0.007) TCGA-UY-A8OD-01 18 61170900 61170900 T C SERPINB5 Missense_Mutation p.I358T 0.05 deleterious(0) possibly_damaging(0.49) TCGA-UY-A8OD-01 18 74616408 74616408 A G ZNF236 Missense_Mutation p.D654G 0.35 deleterious(0) possibly_damaging(0.833) TCGA-UY-A8OD-01 18 76753965 76753965 G A SALL3 Silent p.T658T 0.50 TCGA-UY-A8OD-01 19 11132516 11132516 G A SMARCA4 Missense_Mutation p.G911D 0.53 probably_damaging(0.997) TCGA-UY-A8OD-01 19 14273639 14273639 G C LPHN1 Missense_Mutation p.S330C 0.23 deleterious(0) probably_damaging(0.954) TCGA-UY-A8OD-01 19 18876294 18876294 C T CRTC1 Nonsense_Mutation p.Q339* 0.18 TCGA-UY-A8OD-01 19 43910665 43910665 G C TEX101 Silent p.A3A 0.56 TCGA-UY-A8OD-01 19 50775124 50775124 G C MYH14 Missense_Mutation p.D1064H 0.45 deleterious(0) possibly_damaging(0.495) TCGA-UY-A8OD-01 19 57326732 57326732 T - PEG3 Frame_Shift_Del p.E1027Sfs*118 0.34 TCGA-UY-A8OD-01 1 10386339 10386339 C T KIF1B Missense_Mutation p.T903M 0.32 tolerated(0.15) possibly_damaging(0.707) TCGA-UY-A8OD-01 1 155106243 155106243 G A EFNA1 Silent p.K164K 0.35 TCGA-UY-A8OD-01 1 179564811 179564811 C A TDRD5 Missense_Mutation p.T230K 0.06 tolerated(0.53) benign(0.038) TCGA-UY-A8OD-01 1 193050581 193050581 G A TROVE2 Missense_Mutation p.A392T 0.30 tolerated(0.66) possibly_damaging(0.573) TCGA-UY-A8OD-01 1 201047063 201047063 G C CACNA1S Silent p.P521P 0.10 TCGA-UY-A8OD-01 1 202850103 202850103 C T RABIF 3'UTR 0.40 TCGA-UY-A8OD-01 1 207741348 207741348 G - CR1 Frame_Shift_Del p.V1379Ffs*26 0.14 TCGA-UY-A8OD-01 1 234367345 234367345 G A SLC35F3 Missense_Mutation p.A156T 0.37 tolerated(0.19) probably_damaging(0.95) TCGA-UY-A8OD-01 1 240370360 240370360 G T FMN2 Nonsense_Mutation p.E750* 0.19 TCGA-UY-A8OD-01 1 242287791 242287791 G - PLD5 Frame_Shift_Del p.K305Nfs*22 0.23 TCGA-UY-A8OD-01 1 248308577 248308577 C A OR2M5 Missense_Mutation p.S43Y 0.15 tolerated(0.12) benign(0.211) TCGA-UY-A8OD-01 1 25747202 25747202 G A RHCE Missense_Mutation p.L26F 0.30 tolerated(0.06) probably_damaging(0.972) TCGA-UY-A8OD-01 1 29630407 29630407 C T PTPRU Silent p.L849L 0.27 TCGA-UY-A8OD-01 1 35579830 35579830 G A ZMYM1 Missense_Mutation p.C800Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-UY-A8OD-01 20 23431221 23431221 G A CST11 Silent p.V113V 0.33 TCGA-UY-A8OD-01 20 25657197 25657197 G A ZNF337 Nonsense_Mutation p.R243* 0.20 TCGA-UY-A8OD-01 20 34084442 34084442 C A CEP250 Silent p.L1068L 0.32 TCGA-UY-A8OD-01 20 43851842 43851842 A G SEMG2 Silent p.A523A 0.37 TCGA-UY-A8OD-01 20 46256463 46256463 C G NCOA3 Missense_Mutation p.Q231E 0.31 tolerated(0.25) probably_damaging(0.956) TCGA-UY-A8OD-01 20 49225041 49225041 C T FAM65C Missense_Mutation p.A277T 0.14 tolerated(0.2) benign(0.012) TCGA-UY-A8OD-01 21 42694987 42694987 C A FAM3B Missense_Mutation p.L53I 0.41 tolerated(0.11) benign(0.073) TCGA-UY-A8OD-01 21 43412032 43412032 G A ZBTB21 Missense_Mutation p.R725C 0.57 deleterious(0) probably_damaging(0.944) TCGA-UY-A8OD-01 22 24034543 24034543 C T RGL4 Silent p.F67F 0.40 TCGA-UY-A8OD-01 22 24953738 24953738 C T SNRPD3 Silent p.L32L 0.31 TCGA-UY-A8OD-01 22 45309853 45309853 C T PHF21B Missense_Mutation p.G227D 0.07 tolerated(0.59) benign(0.005) TCGA-UY-A8OD-01 2 103142766 103142766 C T SLC9A4 Nonsense_Mutation p.Q667* 0.28 TCGA-UY-A8OD-01 2 11053197 11053197 C T KCNF1 Silent p.N215N 0.09 TCGA-UY-A8OD-01 2 152322497 152322497 C T RIF1 Missense_Mutation p.L2155F 0.30 tolerated(0.26) benign(0.005) TCGA-UY-A8OD-01 2 152521286 152521286 A G NEB Missense_Mutation p.I1777T 0.43 benign(0.012) TCGA-UY-A8OD-01 2 179452256 179452256 A G TTN Silent p.N21260N 0.43 TCGA-UY-A8OD-01 2 179616724 179616724 G A TTN Intron 0.38 TCGA-UY-A8OD-01 2 216272861 216272861 G A FN1 Missense_Mutation p.R830C 0.14 deleterious(0.01) possibly_damaging(0.719) TCGA-UY-A8OD-01 2 219824859 219824859 G A CDK5R2 Missense_Mutation p.R106H 0.64 tolerated(0.15) possibly_damaging(0.812) TCGA-UY-A8OD-01 2 27688614 27688614 G A IFT172 Missense_Mutation p.R610W 0.29 deleterious(0) probably_damaging(1) TCGA-UY-A8OD-01 3 108639303 108639303 C T GUCA1C Missense_Mutation p.E112K 0.33 deleterious(0) possibly_damaging(0.866) TCGA-UY-A8OD-01 3 111632553 111632553 A G PHLDB2 Intron 0.39 TCGA-UY-A8OD-01 3 119456255 119456255 C - MAATS1 Frame_Shift_Del p.P464Lfs*21 0.14 TCGA-UY-A8OD-01 3 148891453 148891453 G A CP 3'UTR 0.41 TCGA-UY-A8OD-01 3 16216687 16216687 G A GALNT15 Missense_Mutation p.R10K 0.12 tolerated_low_confidence(0.07) benign(0.005) TCGA-UY-A8OD-01 3 169998960 169998960 G A PRKCI Missense_Mutation p.D297N 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-UY-A8OD-01 3 169999712 169999712 G T PRKCI Missense_Mutation p.M341I 0.37 deleterious(0) probably_damaging(0.941) TCGA-UY-A8OD-01 3 29938947 29938947 C - RBMS3 Frame_Shift_Del p.P291Lfs*26 0.31 TCGA-UY-A8OD-01 3 30729955 30729955 G A TGFBR2 Silent p.L517L 0.46 TCGA-UY-A8OD-01 3 39153978 39153978 G C TTC21A Silent p.L155L 0.37 TCGA-UY-A8OD-01 3 49395476 49395476 T C GPX1 Missense_Mutation p.N79S 0.40 deleterious(0.01) benign(0.416) TCGA-UY-A8OD-01 3 56598040 56598040 A C CCDC66 Missense_Mutation p.N144T 0.06 tolerated(0.27) benign(0.015) TCGA-UY-A8OD-01 3 58514638 58514638 T - ACOX2 Frame_Shift_Del p.K346Nfs*31 0.18 TCGA-UY-A8OD-01 3 69092058 69092058 G C TMF1 Missense_Mutation p.I528M 0.19 tolerated(0.13) benign(0.015) TCGA-UY-A8OD-01 4 123813659 123813659 T C FGF2 3'UTR 0.83 TCGA-UY-A8OD-01 4 13543897 13543897 G A NKX3-2 Missense_Mutation p.A241V 0.42 deleterious(0.01) possibly_damaging(0.586) TCGA-UY-A8OD-01 4 156763455 156763455 G T ASIC5 Missense_Mutation p.Q305K 0.67 tolerated(0.29) benign(0.001) TCGA-UY-A8OD-01 4 55604812 55604812 C T KIT 3'UTR 0.52 TCGA-UY-A8OD-01 4 73280627 73280627 T A ADAMTS3 Missense_Mutation p.Q189L 0.37 deleterious(0.02) possibly_damaging(0.589) TCGA-UY-A8OD-01 4 76787440 76787440 G C PPEF2 Missense_Mutation p.R608G 0.51 deleterious(0) possibly_damaging(0.899) TCGA-UY-A8OD-01 5 140181056 140181056 C G PCDHA3 Missense_Mutation p.R92G 0.52 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UY-A8OD-01 5 140347104 140347104 C T PCDHAC2 Silent p.N251N 0.45 TCGA-UY-A8OD-01 5 17354376 17354376 G A CTD-2139B15.2 RNA 0.15 TCGA-UY-A8OD-01 5 71493450 71493450 G C MAP1B Missense_Mutation p.R1423T 0.50 possibly_damaging(0.894) TCGA-UY-A8OD-01 6 111887652 111887652 G A TRAF3IP2 Nonsense_Mutation p.R491* 0.54 TCGA-UY-A8OD-01 6 125233383 125233383 G C RP11-510H23.1 RNA 0.17 TCGA-UY-A8OD-01 6 24865535 24865535 G A FAM65B Silent p.Y186Y 0.21 TCGA-UY-A8OD-01 7 100677570 100677570 C T MUC17 Missense_Mutation p.S958F 0.17 probably_damaging(0.997) TCGA-UY-A8OD-01 7 100681458 100681458 C T MUC17 Missense_Mutation p.S2254F 0.08 unknown(0) TCGA-UY-A8OD-01 7 100816679 100816679 C T NAT16 Silent p.Q145Q 0.36 TCGA-UY-A8OD-01 7 47886585 47886585 T G PKD1L1 Missense_Mutation p.Y1682S 0.63 deleterious(0) probably_damaging(1) TCGA-UY-A8OD-01 7 63720617 63720617 G T ZNF679 Missense_Mutation p.D20Y 0.17 deleterious(0) probably_damaging(1) TCGA-UY-A8OD-01 7 66273946 66273946 A G KCTD7 Missense_Mutation p.Y384C 0.10 deleterious(0.04) benign(0.375) TCGA-UY-A8OD-01 8 108297064 108297064 G C ANGPT1 Missense_Mutation p.P351A 0.14 tolerated(0.31) benign(0.156) TCGA-UY-A8OD-01 8 142154307 142154307 C T DENND3 Silent p.F148F 0.10 TCGA-UY-A8OD-01 8 41581096 41581096 C T ANK1 Missense_Mutation p.R289Q 0.05 tolerated(0.08) benign(0.343) TCGA-UY-A8OD-01 8 70674106 70674106 G T SLCO5A1 Silent p.I304I 0.12 TCGA-UY-A8OD-01 8 93004017 93004017 C T RUNX1T1 Missense_Mutation p.G292S 0.27 tolerated(0.35) probably_damaging(0.922) TCGA-UY-A8OD-01 9 100222895 100222895 G A TDRD7 Missense_Mutation p.E431K 0.37 tolerated(0.11) benign(0.025) TCGA-UY-A8OD-01 9 109694803 109694803 G T ZNF462 Missense_Mutation p.C2030F 0.08 possibly_damaging(0.876) TCGA-UY-A8OD-01 9 127563759 127563759 A C OLFML2A Silent p.R246R 0.09 TCGA-UY-A8OD-01 9 73218260 73218260 C T TRPM3 Missense_Mutation p.E920K 0.06 deleterious(0) probably_damaging(0.996) TCGA-UY-A8OD-01 9 79325728 79325728 C T PRUNE2 Missense_Mutation p.G488S 0.17 tolerated(1) benign(0.007) TCGA-UY-A8OD-01 9 84249096 84249096 G A TLE1 Missense_Mutation p.L165F 0.13 deleterious(0.03) benign(0.009) TCGA-UY-A8OD-01 9 88940394 88940394 T G ZCCHC6 Silent p.S548S 0.29 TCGA-UY-A8OD-01 9 91930157 91930157 G C CKS2 Missense_Mutation p.R44S 0.28 deleterious(0) benign(0.133) TCGA-UY-A8OD-01 X 50659566 50659566 G C BMP15 Missense_Mutation p.E380Q 0.51 deleterious(0.01) probably_damaging(0.976) TCGA-UY-A9PA-01 10 101808524 101808524 T A CPN1 Missense_Mutation p.E407D 0.20 tolerated(0.3) benign(0) TCGA-UY-A9PA-01 10 102048116 102048116 G A PKD2L1 3'UTR 0.06 TCGA-UY-A9PA-01 10 124096176 124096176 C T BTBD16 Silent p.T477T 0.09 TCGA-UY-A9PA-01 10 135352302 135352302 G T CYP2E1 Missense_Mutation p.G439V 0.14 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 10 34666944 34666944 C A PARD3 Missense_Mutation p.G497V 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 10 88768406 88768406 G A RP11-96C23.10 3'Flank 0.10 TCGA-UY-A9PA-01 11 114272469 114272469 C T RBM7 Missense_Mutation p.P49L 0.07 deleterious(0.05) benign(0.052) TCGA-UY-A9PA-01 11 119002618 119002618 G A HINFP Missense_Mutation p.C201Y 0.07 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 11 121498354 121498354 G A SORL1 Missense_Mutation p.G2152E 0.07 deleterious(0.03) possibly_damaging(0.666) TCGA-UY-A9PA-01 11 125333378 125333378 A G FEZ1 Splice_Site p.X166_splice 0.06 TCGA-UY-A9PA-01 11 126133715 126133715 T C SRPR 3'UTR 0.11 TCGA-UY-A9PA-01 11 129062021 129062021 G A ARHGAP32 Nonsense_Mutation p.Q25* 0.06 TCGA-UY-A9PA-01 11 57004431 57004431 C A APLNR Missense_Mutation p.Q16H 0.09 tolerated(0.1) benign(0.289) TCGA-UY-A9PA-01 11 57426974 57426974 A G CLP1 Missense_Mutation p.K9R 0.10 tolerated(0.42) benign(0.046) TCGA-UY-A9PA-01 11 61196668 61196668 C A CPSF7 Nonsense_Mutation p.E57* 0.08 TCGA-UY-A9PA-01 11 6191156 6191156 T C OR52B2 Missense_Mutation p.Y134C 0.05 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PA-01 11 72469644 72469644 G A STARD10 Silent p.V130V 0.10 TCGA-UY-A9PA-01 11 72726931 72726931 C G FCHSD2 Splice_Site p.X56_splice 0.12 TCGA-UY-A9PA-01 11 73584470 73584470 T G COA4 Intron 0.10 TCGA-UY-A9PA-01 11 75672492 75672492 C T UVRAG Missense_Mutation p.H200Y 0.05 deleterious(0.04) benign(0.261) TCGA-UY-A9PA-01 11 77386148 77386148 C G RSF1 Missense_Mutation p.K1165N 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A9PA-01 11 77412858 77412858 A G RSF1 Silent p.Y472Y 0.05 TCGA-UY-A9PA-01 11 9072189 9072189 C T SCUBE2 Missense_Mutation p.E535K 0.06 tolerated(0.17) benign(0.007) TCGA-UY-A9PA-01 11 9522664 9522664 G A ZNF143 Missense_Mutation p.E332K 0.09 tolerated(0.08) benign(0.162) TCGA-UY-A9PA-01 12 1005690 1005690 G C WNK1 Missense_Mutation p.D2013H 0.06 deleterious(0) probably_damaging(0.984) TCGA-UY-A9PA-01 12 110812022 110812022 T C ANAPC7 Missense_Mutation p.E576G 0.06 deleterious(0.01) benign(0.188) TCGA-UY-A9PA-01 12 111785391 111785391 C A CUX2 Missense_Mutation p.S1241R 0.27 deleterious(0.01) benign(0.025) TCGA-UY-A9PA-01 12 129559422 129559422 C T TMEM132D Silent p.L766L 0.05 TCGA-UY-A9PA-01 12 130897307 130897307 C A RIMBP2 Missense_Mutation p.G893V 0.28 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 12 133447326 133447326 C T CHFR Missense_Mutation p.M129I 0.14 tolerated(0.68) benign(0.001) TCGA-UY-A9PA-01 12 15035903 15035903 G A MGP Intron 0.22 TCGA-UY-A9PA-01 12 44194324 44194324 T C TWF1 Missense_Mutation p.K98E 0.13 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PA-01 12 48919543 48919543 G C OR8S1 Silent p.L43L 0.20 TCGA-UY-A9PA-01 12 67663512 67663512 G C CAND1 Silent p.S5S 0.14 TCGA-UY-A9PA-01 12 8200753 8200753 A T FOXJ2 Missense_Mutation p.M365L 0.09 tolerated(0.66) benign(0) TCGA-UY-A9PA-01 12 83289626 83289626 T G TMTC2 Missense_Mutation p.I228M 0.05 tolerated(0.07) possibly_damaging(0.774) TCGA-UY-A9PA-01 12 95475283 95475283 G T FGD6 3'UTR 0.17 TCGA-UY-A9PA-01 13 108861219 108861219 C G LIG4 Missense_Mutation p.E800Q 0.05 deleterious(0) possibly_damaging(0.872) TCGA-UY-A9PA-01 13 114498136 114498136 G A TMEM255B Missense_Mutation p.V90M 0.10 deleterious(0) probably_damaging(0.987) TCGA-UY-A9PA-01 13 25009316 25009316 C T PARP4 Silent p.P1321P 0.13 TCGA-UY-A9PA-01 13 25268647 25268648 TG - ATP12A Frame_Shift_Del p.V488Dfs*4 0.09 TCGA-UY-A9PA-01 13 32802653 32802653 C G FRY Nonsense_Mutation p.S1756* 0.07 TCGA-UY-A9PA-01 13 52598548 52598548 T C ALG11 Missense_Mutation p.F228L 0.06 tolerated(0.62) benign(0.001) TCGA-UY-A9PA-01 13 72204788 72204788 C T DACH1 Missense_Mutation p.M344I 0.09 possibly_damaging(0.561) TCGA-UY-A9PA-01 13 76393544 76393544 A T LMO7 Nonsense_Mutation p.K461* 0.05 TCGA-UY-A9PA-01 13 99947223 99947223 T C GPR183 3'UTR 0.09 TCGA-UY-A9PA-01 14 105353213 105353213 G A CEP170B Silent p.A879A 0.10 TCGA-UY-A9PA-01 14 105416319 105416319 G C AHNAK2 Missense_Mutation p.F1823L 0.11 possibly_damaging(0.782) TCGA-UY-A9PA-01 14 45431921 45431921 C G FAM179B Silent p.L99L 0.06 TCGA-UY-A9PA-01 14 50238354 50238354 G A KLHDC2 Missense_Mutation p.E66K 0.08 deleterious(0.03) benign(0.009) TCGA-UY-A9PA-01 14 61442276 61442276 T C TRMT5 Missense_Mutation p.N454S 0.15 deleterious(0.02) benign(0.15) TCGA-UY-A9PA-01 14 73460063 73460063 G A ZFYVE1 Missense_Mutation p.H331Y 0.08 deleterious(0.03) benign(0.004) TCGA-UY-A9PA-01 14 77297720 77297720 T A C14orf166B Splice_Site p.X130_splice 0.08 TCGA-UY-A9PA-01 14 94701005 94701005 G T PPP4R4 Missense_Mutation p.G244W 0.09 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 15 22369239 22369239 C T OR4M2 Silent p.L222L 0.05 TCGA-UY-A9PA-01 15 25227251 25227251 G A SNRPN 3'Flank 0.06 TCGA-UY-A9PA-01 15 44859730 44859730 C T SPG11 Missense_Mutation p.E2216K 0.07 deleterious(0) possibly_damaging(0.801) TCGA-UY-A9PA-01 15 69011861 69011861 A G CORO2B Silent p.L427L 0.08 TCGA-UY-A9PA-01 15 85399914 85399914 A G ALPK3 Missense_Mutation p.K851E 0.15 tolerated_low_confidence(1) benign(0) TCGA-UY-A9PA-01 16 20835826 20835826 C T AC004381.6 Missense_Mutation p.L228F 0.05 deleterious(0) possibly_damaging(0.788) TCGA-UY-A9PA-01 16 22926341 22926341 C A HS3ST2 Missense_Mutation p.P188T 0.07 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 16 2336825 2336825 G C ABCA3 Missense_Mutation p.P1050A 0.05 tolerated(0.2) benign(0.1) TCGA-UY-A9PA-01 16 29825231 29825231 G T PRRT2 Missense_Mutation p.V286L 0.06 deleterious(0) probably_damaging(0.978) TCGA-UY-A9PA-01 16 30680914 30680914 C T FBRS Missense_Mutation p.P964L 0.05 unknown(0) TCGA-UY-A9PA-01 16 48295472 48295472 T G LONP2 Missense_Mutation p.H287Q 0.06 tolerated(0.29) benign(0.013) TCGA-UY-A9PA-01 16 66947095 66947095 G T CDH16 Missense_Mutation p.D331E 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A9PA-01 16 89816305 89816305 C G FANCA Missense_Mutation p.M1024I 0.06 deleterious(0.02) benign(0.019) TCGA-UY-A9PA-01 17 19741844 19741844 G A ULK2 Nonsense_Mutation p.Q253* 0.10 TCGA-UY-A9PA-01 17 20931928 20931928 G C USP22 Silent p.L77L 0.09 TCGA-UY-A9PA-01 17 30349274 30349274 C A LRRC37B Missense_Mutation p.P370Q 0.05 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PA-01 17 41244457 41244457 T C BRCA1 Missense_Mutation p.I1031V 0.06 tolerated(0.15) benign(0.172) TCGA-UY-A9PA-01 17 45913816 45913816 G A LRRC46 Silent p.L190L 0.10 TCGA-UY-A9PA-01 17 45992745 45992745 C A SP2 Silent p.S25S 0.04 TCGA-UY-A9PA-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.12 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 17 7689456 7689456 T A DNAH2 Silent p.V2048V 0.05 TCGA-UY-A9PA-01 17 77079895 77079895 T G ENGASE Missense_Mutation p.L435W 0.06 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PA-01 17 79580458 79580458 G A NPLOC4 Missense_Mutation p.T91M 0.08 deleterious(0.04) possibly_damaging(0.465) TCGA-UY-A9PA-01 17 79657701 79657701 C T HGS Intron 0.11 TCGA-UY-A9PA-01 17 80231196 80231196 C G CSNK1D Missense_Mutation p.G21A 0.18 deleterious_low_confidence(0.01) benign(0.437) TCGA-UY-A9PA-01 17 80393672 80393672 G A HEXDC Silent p.V185V 0.07 TCGA-UY-A9PA-01 18 70205984 70205984 G T CBLN2 Missense_Mutation p.H127Q 0.13 tolerated(0.09) possibly_damaging(0.449) TCGA-UY-A9PA-01 18 9126853 9126853 G C NDUFV2 Missense_Mutation p.E202Q 0.15 tolerated(0.51) benign(0.098) TCGA-UY-A9PA-01 19 11096952 11096952 G T SMARCA4 Missense_Mutation p.G148V 0.07 probably_damaging(0.994) TCGA-UY-A9PA-01 19 11833762 11833762 A G ZNF823 Missense_Mutation p.L196S 0.09 tolerated(0.44) probably_damaging(0.983) TCGA-UY-A9PA-01 19 11917167 11917167 T G ZNF491 Missense_Mutation p.C133W 0.07 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PA-01 19 13409670 13409670 C T CACNA1A Missense_Mutation p.G926E 0.15 possibly_damaging(0.778) TCGA-UY-A9PA-01 19 14910947 14910947 A G OR7C1 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-UY-A9PA-01 19 17873574 17873574 G A FCHO1 Missense_Mutation p.E11K 0.07 deleterious(0.01) possibly_damaging(0.51) TCGA-UY-A9PA-01 19 22156517 22156517 A C ZNF208 Missense_Mutation p.L440R 0.05 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PA-01 19 2416678 2416678 C G TMPRSS9 Missense_Mutation p.L596V 0.08 tolerated(0.07) probably_damaging(0.951) TCGA-UY-A9PA-01 19 31768622 31768622 C T TSHZ3 Missense_Mutation p.E693K 0.14 tolerated(0.06) benign(0.031) TCGA-UY-A9PA-01 19 37865089 37865089 G A ZNF527 5'UTR 0.09 TCGA-UY-A9PA-01 19 41289874 41289874 C T RAB4B Silent p.T108T 0.07 TCGA-UY-A9PA-01 19 41916729 41916729 G A BCKDHA Intron 0.09 TCGA-UY-A9PA-01 19 44680560 44680561 AG - ZNF226 Frame_Shift_Del p.R383Tfs*11 0.14 TCGA-UY-A9PA-01 19 49643021 49643021 G C PPFIA3 Missense_Mutation p.E725Q 0.24 deleterious(0.04) possibly_damaging(0.678) TCGA-UY-A9PA-01 19 50550224 50550224 T G ZNF473 Missense_Mutation p.Y842D 0.06 deleterious(0) possibly_damaging(0.681) TCGA-UY-A9PA-01 19 50753032 50753032 C T MYH14 Silent p.L536L 0.25 TCGA-UY-A9PA-01 19 52468277 52468277 C T ZNF350 Missense_Mutation p.G477S 0.25 tolerated(0.05) possibly_damaging(0.77) TCGA-UY-A9PA-01 19 6719357 6719357 C A C3 Silent p.L44L 0.09 TCGA-UY-A9PA-01 19 7682263 7682263 C T CAMSAP3 Silent p.R1115R 0.06 TCGA-UY-A9PA-01 19 9060729 9060729 G A MUC16 Missense_Mutation p.T8906I 0.06 unknown(0) TCGA-UY-A9PA-01 19 9236789 9236789 C T OR7G3 Missense_Mutation p.V280M 0.06 deleterious(0.04) possibly_damaging(0.78) TCGA-UY-A9PA-01 1 152192760 152192760 A G HRNR Missense_Mutation p.S449P 0.05 unknown(0) TCGA-UY-A9PA-01 1 152287274 152287274 A G FLG Intron 0.13 TCGA-UY-A9PA-01 1 158647621 158647621 A G SPTA1 Silent p.D272D 0.16 TCGA-UY-A9PA-01 1 159558021 159558021 C T APCS Silent p.A65A 0.04 TCGA-UY-A9PA-01 1 16641716 16641716 C T FBXO42 Silent p.Q66Q 0.10 TCGA-UY-A9PA-01 1 200534573 200534573 A C KIF14 Missense_Mutation p.L1296V 0.13 tolerated(0.23) benign(0.027) TCGA-UY-A9PA-01 1 202205096 202205096 T G LGR6 Missense_Mutation p.W135G 0.09 tolerated(0.38) benign(0.019) TCGA-UY-A9PA-01 1 228464949 228464950 - G OBSCN Frame_Shift_Ins p.D2606Gfs*8 0.23 TCGA-UY-A9PA-01 1 236740250 236740250 C G HEATR1 Splice_Site p.X919_splice 0.06 TCGA-UY-A9PA-01 1 241758064 241758064 A G KMO 3'UTR 0.12 TCGA-UY-A9PA-01 1 247695252 247695252 G T OR2C3 Missense_Mutation p.L188M 0.09 tolerated(0.25) probably_damaging(0.969) TCGA-UY-A9PA-01 1 36437643 36437643 T C AGO3 Silent p.L111L 0.06 TCGA-UY-A9PA-01 1 36883757 36883757 T C OSCP1 Missense_Mutation p.M375V 0.08 deleterious(0.01) benign(0.358) TCGA-UY-A9PA-01 1 45251815 45251815 G A BEST4 Silent p.T189T 0.06 TCGA-UY-A9PA-01 1 8398038 8398038 C T SLC45A1 Missense_Mutation p.A587V 0.08 deleterious(0) possibly_damaging(0.861) TCGA-UY-A9PA-01 20 2443806 2443806 C A SNRPB Missense_Mutation p.G163V 0.09 deleterious(0) probably_damaging(0.972) TCGA-UY-A9PA-01 20 32268212 32268212 C G E2F1 Missense_Mutation p.R91T 0.06 deleterious(0) possibly_damaging(0.468) TCGA-UY-A9PA-01 20 45130360 45130360 A G ZNF334 Missense_Mutation p.W540R 0.06 deleterious(0.02) possibly_damaging(0.77) TCGA-UY-A9PA-01 20 49218831 49218831 C G FAM65C Missense_Mutation p.E475D 0.14 tolerated(0.4) benign(0.018) TCGA-UY-A9PA-01 20 49219061 49219061 C G FAM65C Missense_Mutation p.E399Q 0.15 tolerated(0.11) possibly_damaging(0.508) TCGA-UY-A9PA-01 20 49219081 49219081 C G FAM65C Missense_Mutation p.S392T 0.15 tolerated(0.46) benign(0.113) TCGA-UY-A9PA-01 20 51871674 51871674 T A TSHZ2 Silent p.P559P 0.04 TCGA-UY-A9PA-01 20 57014066 57014066 A T VAPB Silent p.A127A 0.12 TCGA-UY-A9PA-01 20 60711878 60711878 G A PSMA7 3'UTR 0.09 TCGA-UY-A9PA-01 20 62198524 62198524 G A HELZ2 Silent p.H729H 0.16 TCGA-UY-A9PA-01 21 30325696 30325696 C A LTN1 Missense_Mutation p.A1074S 0.04 tolerated(0.43) probably_damaging(0.963) TCGA-UY-A9PA-01 21 41561101 41561101 C T DSCAM Missense_Mutation p.M807I 0.05 deleterious(0.02) benign(0.021) TCGA-UY-A9PA-01 21 44474032 44474032 G C CBS Missense_Mutation p.D538E 0.04 deleterious(0.03) benign(0.359) TCGA-UY-A9PA-01 21 45706895 45706895 G A AIRE Silent p.K114K 0.10 TCGA-UY-A9PA-01 21 45971219 45971219 G A KRTAP10-2 Silent p.P41P 0.07 TCGA-UY-A9PA-01 21 45999860 45999860 C A KRTAP10-5 Missense_Mutation p.C199F 0.04 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PA-01 22 21304146 21304146 T G CRKL 3'UTR 0.08 TCGA-UY-A9PA-01 2 128409176 128409176 C T GPR17 Silent p.N317N 0.12 TCGA-UY-A9PA-01 2 155098558 155098558 C G GALNT13 Silent p.V109V 0.05 TCGA-UY-A9PA-01 2 170394620 170394620 C T FASTKD1 Silent p.Q659Q 0.05 TCGA-UY-A9PA-01 2 174230307 174230307 A T CDCA7 Missense_Mutation p.Y341F 0.07 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PA-01 2 17898110 17898110 T C SMC6 Missense_Mutation p.E415G 0.08 deleterious(0.02) benign(0.032) TCGA-UY-A9PA-01 2 183095852 183095852 C G PDE1A Missense_Mutation p.D158H 0.04 deleterious(0.01) possibly_damaging(0.525) TCGA-UY-A9PA-01 2 200193515 200193515 C T SATB2 Missense_Mutation p.R431H 0.20 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PA-01 2 233431800 233431800 T C EIF4E2 Missense_Mutation p.S181P 0.17 deleterious(0) probably_damaging(0.977) TCGA-UY-A9PA-01 2 240929491 240929491 C G NDUFA10 Missense_Mutation p.E333D 0.11 tolerated(0.18) benign(0.005) TCGA-UY-A9PA-01 2 29274839 29274839 C G FAM179A Silent p.L980L 0.21 TCGA-UY-A9PA-01 2 29375670 29375670 C T CLIP4 Missense_Mutation p.H381Y 0.15 tolerated(0.13) possibly_damaging(0.904) TCGA-UY-A9PA-01 2 31457562 31457562 C G EHD3 Silent p.L25L 0.15 TCGA-UY-A9PA-01 2 63091999 63091999 A G EHBP1 Missense_Mutation p.I332M 0.06 tolerated(0.28) benign(0.001) TCGA-UY-A9PA-01 2 79349237 79349237 C T REG1A Missense_Mutation p.H103Y 0.10 tolerated(0.24) benign(0.016) TCGA-UY-A9PA-01 2 97372956 97372956 T A LMAN2L 3'UTR 0.09 TCGA-UY-A9PA-01 3 121258411 121258411 T G POLQ Missense_Mutation p.K167T 0.04 tolerated(0.09) possibly_damaging(0.809) TCGA-UY-A9PA-01 3 128780823 128780823 G A GP9 Missense_Mutation p.D81N 0.19 tolerated(0.3) benign(0.024) TCGA-UY-A9PA-01 3 164709194 164709194 G A SI Silent p.V1685V 0.06 TCGA-UY-A9PA-01 3 167512415 167512415 T C SERPINI1 Silent p.F228F 0.13 TCGA-UY-A9PA-01 3 24231668 24231668 C T THRB Silent p.Q60Q 0.07 TCGA-UY-A9PA-01 3 47734738 47734738 C A SMARCC1 Silent p.A406A 0.07 TCGA-UY-A9PA-01 3 49759438 49759438 T G GMPPB Missense_Mutation p.E304A 0.08 tolerated(0.32) benign(0.209) TCGA-UY-A9PA-01 3 52821989 52821993 CCCCT TCCC ITIH1 Intron 0.14 TCGA-UY-A9PA-01 3 93780370 93780370 A G DHFRL1 5'UTR 0.08 TCGA-UY-A9PA-01 4 155242157 155242157 T A DCHS2 Missense_Mutation p.K1010M 0.12 deleterious(0.01) possibly_damaging(0.645) TCGA-UY-A9PA-01 4 158257809 158257809 G C GRIA2 Missense_Mutation p.S585T 0.07 tolerated(0.63) benign(0.001) TCGA-UY-A9PA-01 4 164507041 164507041 T C MARCH1 Missense_Mutation p.T95A 0.17 tolerated(0.19) benign(0.401) TCGA-UY-A9PA-01 4 170628216 170628216 C T CLCN3 Missense_Mutation p.H650Y 0.12 tolerated(0.26) probably_damaging(0.964) TCGA-UY-A9PA-01 4 438025 438025 C G ZNF721 Missense_Mutation p.Q77H 0.10 tolerated(0.44) possibly_damaging(0.827) TCGA-UY-A9PA-01 4 5564656 5564656 C T EVC2 Silent p.E1282E 0.07 TCGA-UY-A9PA-01 4 85645708 85645708 T A WDFY3 Nonsense_Mutation p.K2438* 0.06 TCGA-UY-A9PA-01 5 102494944 102494944 C T PPIP5K2 Missense_Mutation p.S611F 0.06 deleterious(0.01) benign(0.112) TCGA-UY-A9PA-01 5 118484935 118484935 A G DMXL1 Missense_Mutation p.H1138R 0.11 deleterious(0) benign(0.001) TCGA-UY-A9PA-01 5 137713498 137713498 A G KDM3B Silent p.Q188Q 0.09 TCGA-UY-A9PA-01 5 13885125 13885125 G C DNAH5 Missense_Mutation p.H986D 0.04 benign(0.227) TCGA-UY-A9PA-01 5 140558398 140558398 G C PCDHB8 Silent p.L261L 0.06 TCGA-UY-A9PA-01 5 140562365 140562365 C T PCDHB16 Silent p.L77L 0.09 TCGA-UY-A9PA-01 5 140562366 140562366 A C PCDHB16 Missense_Mutation p.K78Q 0.09 deleterious_low_confidence(0.02) benign(0.063) TCGA-UY-A9PA-01 5 140588552 140588552 C T PCDHB12 Nonsense_Mutation p.Q25* 0.12 TCGA-UY-A9PA-01 5 145465065 145465065 A G PLAC8L1 Missense_Mutation p.F118L 0.14 tolerated(0.5) benign(0.039) TCGA-UY-A9PA-01 5 153182004 153182004 T C GRIA1 Missense_Mutation p.L835S 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A9PA-01 5 182322 182322 G A PLEKHG4B Missense_Mutation p.D1234N 0.13 deleterious(0.03) benign(0.141) TCGA-UY-A9PA-01 5 65346627 65346628 AG - ERBB2IP Frame_Shift_Del p.D641Ffs*5 0.12 TCGA-UY-A9PA-01 5 71530006 71530006 G C MRPS27 Missense_Mutation p.P139A 0.10 deleterious(0.01) probably_damaging(1) TCGA-UY-A9PA-01 5 7690871 7690871 G C ADCY2 Missense_Mutation p.R263T 0.08 deleterious(0) benign(0.196) TCGA-UY-A9PA-01 6 10956418 10956418 T A SYCP2L Silent p.G702G 0.05 TCGA-UY-A9PA-01 6 158850771 158850771 A G TULP4 Missense_Mutation p.S129G 0.07 deleterious(0) probably_damaging(0.966) TCGA-UY-A9PA-01 6 160888683 160888683 G T LPAL2 RNA 0.05 TCGA-UY-A9PA-01 6 26637599 26637599 C G ZNF322 Missense_Mutation p.A395P 0.04 deleterious_low_confidence(0.01) benign(0) TCGA-UY-A9PA-01 6 31683389 31683389 C T LY6G6D Silent p.L56L 0.16 TCGA-UY-A9PA-01 6 32944544 32944544 G A BRD2 Missense_Mutation p.G344E 0.05 tolerated(0.56) probably_damaging(0.933) TCGA-UY-A9PA-01 6 37631847 37631847 C T MDGA1 Missense_Mutation p.A35T 0.07 deleterious(0) probably_damaging(0.989) TCGA-UY-A9PA-01 6 43251345 43251345 C T TTBK1 Missense_Mutation p.A956V 0.12 benign(0.001) TCGA-UY-A9PA-01 6 44197677 44197677 G A SLC29A1 Silent p.L116L 0.14 TCGA-UY-A9PA-01 6 79607896 79607896 G C IRAK1BP1 Missense_Mutation p.E210Q 0.13 deleterious(0) probably_damaging(0.938) TCGA-UY-A9PA-01 6 90661094 90661094 T A BACH2 Missense_Mutation p.N244I 0.08 deleterious(0) benign(0.377) TCGA-UY-A9PA-01 6 99828202 99828202 T C COQ3 Silent p.R83R 0.09 TCGA-UY-A9PA-01 7 100061291 100061291 T C C7orf61 Missense_Mutation p.K28E 0.04 tolerated(0.06) possibly_damaging(0.492) TCGA-UY-A9PA-01 7 100681824 100681824 G T MUC17 Missense_Mutation p.G2376V 0.05 unknown(0) TCGA-UY-A9PA-01 7 107427325 107427325 G T SLC26A3 Silent p.G306G 0.06 TCGA-UY-A9PA-01 7 117450860 117450860 T C CTTNBP2 Missense_Mutation p.M125V 0.06 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PA-01 7 131853320 131853320 G A PLXNA4 Silent p.Y1343Y 0.10 TCGA-UY-A9PA-01 7 135323399 135323399 C T NUP205 Missense_Mutation p.S1787L 0.05 tolerated(0.21) benign(0.006) TCGA-UY-A9PA-01 7 142168408 142168408 C T TRBV5-4 Silent p.S105S 0.07 TCGA-UY-A9PA-01 7 142574308 142574308 G C TRPV6 Silent p.L205L 0.14 TCGA-UY-A9PA-01 7 44153382 44153382 G A AEBP1 Missense_Mutation p.R1000Q 0.05 tolerated(0.24) benign(0.131) TCGA-UY-A9PA-01 7 78636425 78636425 G A MAGI2 Silent p.L133L 0.06 TCGA-UY-A9PA-01 8 125078729 125078729 T G FER1L6 Missense_Mutation p.S1206A 0.07 tolerated(0.37) probably_damaging(0.951) TCGA-UY-A9PA-01 8 131181295 131181295 C G ASAP1 Missense_Mutation p.L255F 0.05 deleterious(0) probably_damaging(0.969) TCGA-UY-A9PA-01 8 139736904 139736904 G T COL22A1 Missense_Mutation p.P734H 0.08 unknown(0) TCGA-UY-A9PA-01 8 144809077 144809077 G C FAM83H Missense_Mutation p.L852V 0.20 tolerated(1) benign(0.042) TCGA-UY-A9PA-01 8 144895519 144895519 C G SCRIB Missense_Mutation p.E177Q 0.19 probably_damaging(0.999) TCGA-UY-A9PA-01 8 19805732 19805732 A T LPL Missense_Mutation p.R44W 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 8 39678663 39678663 C G ADAM2 Missense_Mutation p.S124T 0.08 tolerated(0.14) possibly_damaging(0.699) TCGA-UY-A9PA-01 8 57127187 57127187 A G CHCHD7 Silent p.T30T 0.05 TCGA-UY-A9PA-01 8 57127188 57127188 C A CHCHD7 Missense_Mutation p.Q31K 0.06 tolerated(0.68) benign(0.001) TCGA-UY-A9PA-01 8 65528840 65528840 T A CYP7B1 Splice_Site p.X87_splice 0.21 TCGA-UY-A9PA-01 9 101798598 101798598 G A COL15A1 Missense_Mutation p.E777K 0.05 deleterious(0.01) benign(0.055) TCGA-UY-A9PA-01 9 107289187 107289187 A G OR13C4 Missense_Mutation p.F102L 0.04 tolerated(0.06) possibly_damaging(0.624) TCGA-UY-A9PA-01 9 112924403 112924403 G A PALM2-AKAP2 Silent p.V1068V 0.07 TCGA-UY-A9PA-01 9 114454463 114454463 C G C9orf84 Missense_Mutation p.G1201A 0.06 tolerated(0.39) benign(0.001) TCGA-UY-A9PA-01 9 130216823 130216823 G T LRSAM1 Missense_Mutation p.R6L 0.09 deleterious(0.01) probably_damaging(0.925) TCGA-UY-A9PA-01 9 131196706 131196706 A C CERCAM Missense_Mutation p.Q450P 0.08 deleterious(0) benign(0.158) TCGA-UY-A9PA-01 9 133768915 133768915 G A QRFP Missense_Mutation p.A104V 0.06 deleterious(0.01) benign(0.036) TCGA-UY-A9PA-01 9 137623474 137623474 G C COL5A1 Missense_Mutation p.G433R 0.11 probably_damaging(1) TCGA-UY-A9PA-01 9 137716455 137716455 G A COL5A1 Missense_Mutation p.G1570R 0.14 unknown(0) TCGA-UY-A9PA-01 9 15453176 15453176 A G SNAPC3 Missense_Mutation p.E318G 0.12 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 9 18635941 18635941 C A ADAMTSL1 Nonsense_Mutation p.S201* 0.06 TCGA-UY-A9PA-01 9 73478029 73478029 C T TRPM3 Splice_Site p.X86_splice 0.21 TCGA-UY-A9PA-01 9 79325259 79325259 A G PRUNE2 Missense_Mutation p.M644T 0.05 tolerated(1) benign(0) TCGA-UY-A9PA-01 9 84607629 84607629 C T SPATA31D1 Silent p.S748S 0.11 TCGA-UY-A9PA-01 9 91262464 91262464 C T RP13-60M5.2 RNA 0.06 TCGA-UY-A9PA-01 9 95792238 95792238 C G FGD3 Missense_Mutation p.S547C 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A9PA-01 X 115577926 115577926 T G SLC6A14 Missense_Mutation p.L270R 0.09 deleterious(0.02) possibly_damaging(0.832) TCGA-UY-A9PA-01 X 118699358 118699358 G A CXorf56 5'UTR 0.25 TCGA-UY-A9PA-01 X 76813097 76813097 A G ATRX Missense_Mutation p.I2175T 0.26 possibly_damaging(0.74) TCGA-UY-A9PA-01 X 83320118 83320118 T C RPS6KA6 Missense_Mutation p.D658G 0.21 deleterious(0.04) possibly_damaging(0.514) TCGA-UY-A9PB-01 10 102289622 102289622 A G NDUFB8 5'Flank 0.13 TCGA-UY-A9PB-01 10 104120129 104120129 G A GBF1 Missense_Mutation p.E456K 0.12 deleterious(0.01) possibly_damaging(0.883) TCGA-UY-A9PB-01 10 115364439 115364439 G A NRAP Missense_Mutation p.H1386Y 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A9PB-01 10 115364602 115364602 G A NRAP Silent p.I1331I 0.24 TCGA-UY-A9PB-01 10 115373944 115373944 C T NRAP Missense_Mutation p.D1100N 0.30 deleterious(0.03) benign(0.007) TCGA-UY-A9PB-01 10 115668275 115668275 G C NHLRC2 Missense_Mutation p.E721Q 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.849) TCGA-UY-A9PB-01 10 118116924 118116924 T A CCDC172 Missense_Mutation p.L161I 0.08 deleterious(0.01) possibly_damaging(0.706) TCGA-UY-A9PB-01 10 126672109 126672109 C G ZRANB1 Missense_Mutation p.S587C 0.11 tolerated(0.05) benign(0.058) TCGA-UY-A9PB-01 10 128193148 128193148 C T C10orf90 Silent p.L207L 0.10 TCGA-UY-A9PB-01 10 135010624 135010624 A T KNDC1 Missense_Mutation p.R599S 0.18 tolerated(0.34) benign(0.05) TCGA-UY-A9PB-01 10 135098648 135098648 G C TUBGCP2 Silent p.L683L 0.10 TCGA-UY-A9PB-01 10 135342014 135342014 G A CYP2E1 Silent p.T69T 0.32 TCGA-UY-A9PB-01 10 17145193 17145193 G A CUBN Silent p.Y487Y 0.38 TCGA-UY-A9PB-01 10 17156085 17156085 G C CUBN Missense_Mutation p.S275C 0.30 deleterious(0.03) probably_damaging(0.989) TCGA-UY-A9PB-01 10 22208758 22208758 C T DNAJC1 Intron 0.17 TCGA-UY-A9PB-01 10 26998574 26998574 T A PDSS1 Missense_Mutation p.L115H 0.18 tolerated(0.54) benign(0.008) TCGA-UY-A9PB-01 10 27405259 27405259 C T YME1L1 Missense_Mutation p.E636K 0.21 deleterious(0.04) probably_damaging(0.992) TCGA-UY-A9PB-01 10 27826877 27826877 C G RAB18 Missense_Mutation p.P173R 0.30 deleterious(0) probably_damaging(0.959) TCGA-UY-A9PB-01 10 3191833 3191833 G C PITRM1 Silent p.L617L 0.25 TCGA-UY-A9PB-01 10 32306189 32306189 C A KIF5B Silent p.L881L 0.28 TCGA-UY-A9PB-01 10 32344923 32344923 C A KIF5B 5'UTR 0.22 TCGA-UY-A9PB-01 10 46248665 46248665 C T FAM21C Missense_Mutation p.A387V 0.11 tolerated(0.34) benign(0.006) TCGA-UY-A9PB-01 10 48390167 48390167 G A RBP3 Silent p.G237G 0.38 TCGA-UY-A9PB-01 10 64913526 64913526 C T NRBF2 Missense_Mutation p.P138S 0.30 tolerated(0.36) probably_damaging(0.995) TCGA-UY-A9PB-01 10 72360130 72360130 G A PRF1 Missense_Mutation p.R177C 0.46 deleterious(0.02) possibly_damaging(0.907) TCGA-UY-A9PB-01 10 72493773 72493773 C A ADAMTS14 Missense_Mutation p.S450R 0.36 tolerated(0.59) benign(0.033) TCGA-UY-A9PB-01 10 7822024 7822024 C G KIN Missense_Mutation p.R124T 0.19 deleterious(0) probably_damaging(0.938) TCGA-UY-A9PB-01 10 79569478 79569478 C T DLG5 Missense_Mutation p.D1492N 0.31 tolerated(0.13) possibly_damaging(0.505) TCGA-UY-A9PB-01 10 97443046 97443046 T C TCTN3 Intron 0.38 TCGA-UY-A9PB-01 11 104903802 104903802 G C CASP1 Missense_Mutation p.S109C 0.11 tolerated(0.07) benign(0.319) TCGA-UY-A9PB-01 11 108119786 108119786 G C ATM Missense_Mutation p.D398H 0.11 deleterious(0) possibly_damaging(0.671) TCGA-UY-A9PB-01 11 119058155 119058155 C T PDZD3 Silent p.F169F 0.11 TCGA-UY-A9PB-01 11 1215896 1215896 G A MUC5AC Intron 0.13 TCGA-UY-A9PB-01 11 124135413 124135413 G C OR8G5 Missense_Mutation p.E231Q 0.12 deleterious(0.01) probably_damaging(0.94) TCGA-UY-A9PB-01 11 125482606 125482606 G A STT3A Silent p.K443K 0.19 TCGA-UY-A9PB-01 11 129785675 129785675 C G PRDM10 Missense_Mutation p.K806N 0.18 deleterious(0.05) probably_damaging(0.996) TCGA-UY-A9PB-01 11 132184539 132184539 C T NTM Silent p.N292N 0.19 TCGA-UY-A9PB-01 11 1606004 1606004 G C KRTAP5-1 Missense_Mutation p.S159C 0.10 deleterious_low_confidence(0) unknown(0) TCGA-UY-A9PB-01 11 17132022 17132022 C T PIK3C2A Silent p.L1167L 0.16 TCGA-UY-A9PB-01 11 18731172 18731172 G C IGSF22 Silent p.S920S 0.09 TCGA-UY-A9PB-01 11 18738435 18738435 G C IGSF22 Missense_Mutation p.F362L 0.20 tolerated(0.06) possibly_damaging(0.519) TCGA-UY-A9PB-01 11 233039 233039 T C SIRT3 Missense_Mutation p.H217R 0.20 deleterious(0.01) possibly_damaging(0.46) TCGA-UY-A9PB-01 11 27077157 27077157 G C BBOX1 Silent p.V60V 0.12 TCGA-UY-A9PB-01 11 30032369 30032369 C T KCNA4 Silent p.K619K 0.13 TCGA-UY-A9PB-01 11 32608657 32608657 G T EIF3M Missense_Mutation p.A48S 0.17 tolerated(0.09) benign(0.074) TCGA-UY-A9PB-01 11 32615424 32615424 A G EIF3M Silent p.S182S 0.12 TCGA-UY-A9PB-01 11 34162716 34162716 G C NAT10 Missense_Mutation p.L891F 0.11 deleterious(0.01) possibly_damaging(0.465) TCGA-UY-A9PB-01 11 43380533 43380533 G C TTC17 Missense_Mutation p.R10P 0.17 deleterious_low_confidence(0) benign(0.12) TCGA-UY-A9PB-01 11 46829667 46829667 C G CKAP5 Missense_Mutation p.E298Q 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-UY-A9PB-01 11 4703580 4703580 C T OR51E2 Missense_Mutation p.R121H 0.11 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PB-01 11 4928609 4928609 C T OR51A7 Missense_Mutation p.L4F 0.15 tolerated(0.72) benign(0.003) TCGA-UY-A9PB-01 11 5290802 5290802 T C HBE1 Missense_Mutation p.K66R 0.32 tolerated(0.07) benign(0.18) TCGA-UY-A9PB-01 11 55065458 55065458 G T TRIM51HP RNA 0.20 TCGA-UY-A9PB-01 11 5529035 5529035 G A UBQLN3 Missense_Mutation p.S585F 0.11 deleterious(0) possibly_damaging(0.721) TCGA-UY-A9PB-01 11 55861579 55861579 T C OR8I2 Missense_Mutation p.S266P 0.11 deleterious(0) benign(0.399) TCGA-UY-A9PB-01 11 56019748 56019748 G A OR5T3 Missense_Mutation p.G25S 0.10 tolerated_low_confidence(0.27) benign(0.005) TCGA-UY-A9PB-01 11 5602722 5602722 C G OR52B6 Missense_Mutation p.L206V 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-UY-A9PB-01 11 61504668 61504668 A G DAGLA Silent p.K462K 0.14 TCGA-UY-A9PB-01 11 62297456 62297456 C G AHNAK Missense_Mutation p.G1478A 0.19 probably_damaging(0.999) TCGA-UY-A9PB-01 11 63256350 63256350 G A HRASLS5 Missense_Mutation p.A123V 0.10 tolerated(0.13) benign(0.109) TCGA-UY-A9PB-01 11 64012231 64012231 T A PPP1R14B Nonsense_Mutation p.K147* 0.07 TCGA-UY-A9PB-01 11 6425014 6425014 C T APBB1 Missense_Mutation p.D254N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A9PB-01 11 64674210 64674210 G A ATG2A Silent p.V970V 0.14 TCGA-UY-A9PB-01 11 65273615 65273615 C T MALAT1 RNA 0.15 TCGA-UY-A9PB-01 11 65273616 65273616 C T MALAT1 RNA 0.14 TCGA-UY-A9PB-01 11 65273813 65273813 C T MALAT1 RNA 0.20 TCGA-UY-A9PB-01 11 66361124 66361124 G C CCS Silent p.A17A 0.17 TCGA-UY-A9PB-01 11 66463952 66463952 C G SPTBN2 Silent p.L1358L 0.16 TCGA-UY-A9PB-01 11 6651692 6651692 G A DCHS1 Silent p.L1445L 0.31 TCGA-UY-A9PB-01 11 67433663 67433663 G A ALDH3B2 Silent p.A83A 0.10 TCGA-UY-A9PB-01 11 6913428 6913428 G A OR2D2 Missense_Mutation p.L102F 0.10 tolerated(0.94) benign(0.001) TCGA-UY-A9PB-01 11 6962820 6962820 C G ZNF215 Missense_Mutation p.S140C 0.26 tolerated(0.06) benign(0.017) TCGA-UY-A9PB-01 11 70507700 70507700 C T SHANK2 Splice_Site p.X647_splice 0.04 TCGA-UY-A9PB-01 11 71152279 71152279 C T DHCR7 Missense_Mutation p.R207K 0.19 tolerated(0.63) benign(0.002) TCGA-UY-A9PB-01 11 723349 723349 C G EPS8L2 Missense_Mutation p.H484D 0.19 tolerated(0.48) benign(0.018) TCGA-UY-A9PB-01 11 7662790 7662790 C A PPFIBP2 Missense_Mutation p.Q486K 0.08 tolerated(0.17) benign(0.097) TCGA-UY-A9PB-01 11 92565071 92565071 C G FAT3 Silent p.V3255V 0.35 TCGA-UY-A9PB-01 11 93468483 93468483 C G KIAA1731 3'Flank 0.28 TCGA-UY-A9PB-01 12 101776966 101776966 G A UTP20 Missense_Mutation p.D2602N 0.15 tolerated(0.39) benign(0.001) TCGA-UY-A9PB-01 12 103248974 103248974 A T PAH Missense_Mutation p.Y216N 0.16 tolerated(0.46) benign(0.007) TCGA-UY-A9PB-01 12 104513519 104513519 G A NFYB Missense_Mutation p.S207L 0.07 deleterious_low_confidence(0) benign(0.081) TCGA-UY-A9PB-01 12 105520904 105520904 C T KIAA1033 Intron 0.16 TCGA-UY-A9PB-01 12 10962174 10962174 C T TAS2R9 Nonsense_Mutation p.W167* 0.15 TCGA-UY-A9PB-01 12 110983866 110983866 T C PPTC7 Missense_Mutation p.I141V 0.17 tolerated(0.71) benign(0.02) TCGA-UY-A9PB-01 12 111168406 111168406 C G PPP1CC Missense_Mutation p.E116Q 0.21 deleterious_low_confidence(0.03) benign(0.079) TCGA-UY-A9PB-01 12 117161012 117161012 C G C12orf49 Missense_Mutation p.R43T 0.14 tolerated(0.3) benign(0.008) TCGA-UY-A9PB-01 12 12037408 12037408 C G ETV6 Missense_Mutation p.Q347E 0.19 deleterious(0) probably_damaging(0.99) TCGA-UY-A9PB-01 12 122658533 122658533 G A IL31 Missense_Mutation p.S8L 0.18 deleterious(0.02) benign(0.011) TCGA-UY-A9PB-01 12 124209225 124209225 G A ATP6V0A2 Missense_Mutation p.E107K 0.22 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PB-01 12 124218484 124218484 A - ATP6V0A2 Frame_Shift_Del p.K221Nfs*6 0.09 TCGA-UY-A9PB-01 12 129694164 129694164 C A TMEM132D Silent p.V448V 0.10 TCGA-UY-A9PB-01 12 130185124 130185124 G T TMEM132D Missense_Mutation p.Q67K 0.13 deleterious(0.01) possibly_damaging(0.805) TCGA-UY-A9PB-01 12 133372576 133372576 G C GOLGA3 Missense_Mutation p.I777M 0.26 deleterious(0.01) benign(0.301) TCGA-UY-A9PB-01 12 133779064 133779064 T C ZNF268 Silent p.L264L 0.16 TCGA-UY-A9PB-01 12 20799863 20799863 G C PDE3A Silent p.L848L 0.16 TCGA-UY-A9PB-01 12 21032489 21032489 T C SLCO1B3 Missense_Mutation p.F419L 0.12 tolerated(0.21) benign(0.02) TCGA-UY-A9PB-01 12 27156200 27156200 T A TM7SF3 Missense_Mutation p.Q72L 0.09 tolerated(0.15) benign(0.003) TCGA-UY-A9PB-01 12 2977885 2977885 C G FOXM1 Missense_Mutation p.Q230H 0.05 tolerated(0.09) benign(0.029) TCGA-UY-A9PB-01 12 31814788 31814788 G T METTL20 5'UTR 0.60 TCGA-UY-A9PB-01 12 464390 464390 A G KDM5A Silent p.V268V 0.20 TCGA-UY-A9PB-01 12 475246 475246 C G KDM5A Missense_Mutation p.E131Q 0.14 deleterious(0.04) possibly_damaging(0.467) TCGA-UY-A9PB-01 12 4763543 4763543 A G NDUFA9 Silent p.K45K 0.18 TCGA-UY-A9PB-01 12 4881630 4881630 G A GALNT8 Missense_Mutation p.R594K 0.14 tolerated(0.26) benign(0.136) TCGA-UY-A9PB-01 12 50367142 50367142 C G AQP6 Missense_Mutation p.F62L 0.22 deleterious(0.01) possibly_damaging(0.653) TCGA-UY-A9PB-01 12 51279200 51279200 A G TMPRSS12 Intron 0.20 TCGA-UY-A9PB-01 12 5154853 5154853 G A KCNA5 Missense_Mutation p.V514I 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A9PB-01 12 53839887 53839887 C T PRR13 3'UTR 0.29 TCGA-UY-A9PB-01 12 54404929 54404929 G C HOXC8 Missense_Mutation p.E165Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 12 56397518 56397518 G C SUOX Silent p.V115V 0.16 TCGA-UY-A9PB-01 12 6559516 6559516 G C CD27 Missense_Mutation p.S149T 0.17 tolerated(0.35) benign(0.001) TCGA-UY-A9PB-01 12 6664485 6664485 C T IFFO1 Silent p.E237E 0.22 TCGA-UY-A9PB-01 12 7030904 7030904 C G ENO2 Silent p.L342L 0.12 TCGA-UY-A9PB-01 12 72050712 72050712 C G ZFC3H1 Missense_Mutation p.G323A 0.16 tolerated(0.23) possibly_damaging(0.621) TCGA-UY-A9PB-01 12 9717779 9717779 G C RP11-726G1.1 RNA 0.44 TCGA-UY-A9PB-01 12 98849173 98849173 G C SLC9A7P1 RNA 0.22 TCGA-UY-A9PB-01 13 28519376 28519376 G C ATP5EP2 5'UTR 0.14 TCGA-UY-A9PB-01 13 31338313 31338313 G C ALOX5AP 3'UTR 0.23 TCGA-UY-A9PB-01 13 32911900 32911900 A G BRCA2 Missense_Mutation p.I1136M 0.22 tolerated(0.27) benign(0.086) TCGA-UY-A9PB-01 13 35747692 35747692 G - NBEA Frame_Shift_Del p.E1506Kfs*6 0.13 TCGA-UY-A9PB-01 13 52509052 52509052 G T ATP7B Missense_Mutation p.S1413Y 0.25 deleterious(0.02) benign(0.27) TCGA-UY-A9PB-01 13 67477695 67477695 G A PCDH9 Nonsense_Mutation p.Q1027* 0.06 TCGA-UY-A9PB-01 13 92345590 92345590 C T GPC5 Missense_Mutation p.P159S 0.12 deleterious(0.02) benign(0.41) TCGA-UY-A9PB-01 13 96375563 96375563 A T DNAJC3 Silent p.S87S 0.12 TCGA-UY-A9PB-01 13 98655286 98655286 C T IPO5 Nonsense_Mutation p.Q516* 0.18 TCGA-UY-A9PB-01 14 103436491 103436491 G C CDC42BPB Silent p.L664L 0.12 TCGA-UY-A9PB-01 14 105212714 105212714 G C ADSSL1 Missense_Mutation p.G481A 0.21 deleterious(0.01) benign(0.142) TCGA-UY-A9PB-01 14 105412758 105412758 G A AHNAK2 Silent p.A3010A 0.18 TCGA-UY-A9PB-01 14 105945814 105945814 C G CRIP2 Missense_Mutation p.I255M 0.17 tolerated(0.1) probably_damaging(0.998) TCGA-UY-A9PB-01 14 106877676 106877676 G A IGHV4-39 Silent p.F106F 0.04 TCGA-UY-A9PB-01 14 107199132 107199132 T C IGHV3-72 Missense_Mutation p.M53V 0.13 deleterious_low_confidence(0.01) benign(0.01) TCGA-UY-A9PB-01 14 20389260 20389260 C A OR4K5 Missense_Mutation p.N165K 0.06 tolerated(0.11) benign(0.042) TCGA-UY-A9PB-01 14 20389478 20389478 C T OR4K5 Missense_Mutation p.S238F 0.05 deleterious(0) probably_damaging(0.934) TCGA-UY-A9PB-01 14 22321095 22321095 G T TRAV8-3 Nonsense_Mutation p.E85* 0.16 TCGA-UY-A9PB-01 14 24656175 24656175 C T IPO4 Missense_Mutation p.C222Y 0.19 deleterious(0) possibly_damaging(0.862) TCGA-UY-A9PB-01 14 35482627 35482627 G C SRP54 Missense_Mutation p.D238H 0.27 deleterious(0.01) possibly_damaging(0.608) TCGA-UY-A9PB-01 14 39818080 39818080 G C CTAGE5 Missense_Mutation p.G721A 0.18 tolerated(0.06) probably_damaging(0.997) TCGA-UY-A9PB-01 14 45398150 45398150 T C KLHL28 3'UTR 0.29 TCGA-UY-A9PB-01 14 45432533 45432533 G A FAM179B Silent p.L303L 0.16 TCGA-UY-A9PB-01 14 50053085 50053085 G A RPS29 5'UTR 0.18 TCGA-UY-A9PB-01 14 58666912 58666912 C T ACTR10 5'UTR 0.33 TCGA-UY-A9PB-01 14 74062294 74062294 A G ACOT4 Missense_Mutation p.Q401R 0.11 tolerated(0.42) benign(0.1) TCGA-UY-A9PB-01 14 77880434 77880434 G C NOXRED1 Silent p.L64L 0.16 TCGA-UY-A9PB-01 14 93118661 93118661 G C RIN3 Missense_Mutation p.E423Q 0.43 tolerated(0.27) benign(0.306) TCGA-UY-A9PB-01 14 93125515 93125515 T C RIN3 Missense_Mutation p.V679A 0.17 tolerated(0.32) possibly_damaging(0.463) TCGA-UY-A9PB-01 14 94756828 94756828 G A SERPINA10 Nonsense_Mutation p.Q35* 0.18 TCGA-UY-A9PB-01 14 95058476 95058476 C T SERPINA5 Missense_Mutation p.S374L 0.16 deleterious(0) benign(0.151) TCGA-UY-A9PB-01 14 96864617 96864617 C A AK7 Intron 0.20 TCGA-UY-A9PB-01 15 100332288 100332288 C T AC090825.1 5'Flank 0.17 TCGA-UY-A9PB-01 15 25334036 25334036 G C SNORD116-20 RNA 0.15 TCGA-UY-A9PB-01 15 27193291 27193291 C T GABRA5 Missense_Mutation p.P434S 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 15 28408319 28408319 G A HERC2 Missense_Mutation p.S3556L 0.18 benign(0.004) TCGA-UY-A9PB-01 15 33765667 33765667 G C RYR3 Missense_Mutation p.Q33H 0.11 benign(0.001) TCGA-UY-A9PB-01 15 43873494 43873494 C T PPIP5K1 Silent p.E290E 0.06 TCGA-UY-A9PB-01 15 48063533 48063533 C A SEMA6D Silent p.R925R 0.06 TCGA-UY-A9PB-01 15 57731769 57731769 G A CGNL1 Silent p.V524V 0.23 TCGA-UY-A9PB-01 15 60741875 60741875 C A NARG2 Missense_Mutation p.A431S 0.12 tolerated(0.53) benign(0.003) TCGA-UY-A9PB-01 15 65917692 65917692 C T SLC24A1 Missense_Mutation p.S425L 0.12 possibly_damaging(0.587) TCGA-UY-A9PB-01 15 75503104 75503104 G A C15orf39 Missense_Mutation p.E931K 0.09 tolerated_low_confidence(0.16) benign(0.093) TCGA-UY-A9PB-01 15 75684779 75684779 G A SIN3A Silent p.L885L 0.12 TCGA-UY-A9PB-01 15 75703843 75703843 T C SIN3A Missense_Mutation p.H333R 0.12 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 15 75978002 75978002 G A CSPG4 Missense_Mutation p.S1277L 0.33 tolerated(0.42) benign(0.003) TCGA-UY-A9PB-01 15 81650549 81650549 C T TMC3 Silent p.L228L 0.25 TCGA-UY-A9PB-01 15 89402225 89402225 C T ACAN Missense_Mutation p.H2137Y 0.10 tolerated(0.37) possibly_damaging(0.885) TCGA-UY-A9PB-01 16 135484 135484 A G MPG Missense_Mutation p.K202R 0.07 tolerated(0.13) benign(0.041) TCGA-UY-A9PB-01 16 15961342 15961342 A G FOPNL Silent p.S160S 0.18 TCGA-UY-A9PB-01 16 21629243 21629243 T C METTL9 Silent p.L138L 0.13 TCGA-UY-A9PB-01 16 22545856 22545856 C T NPIPB5 Nonsense_Mutation p.Q518* 0.04 TCGA-UY-A9PB-01 16 2487288 2487288 C A CCNF Missense_Mutation p.H169N 0.31 tolerated(0.05) benign(0.296) TCGA-UY-A9PB-01 16 27733005 27733005 A G KIAA0556 Missense_Mutation p.T578A 0.14 tolerated(0.13) benign(0.036) TCGA-UY-A9PB-01 16 30744953 30744953 C T SRCAP Missense_Mutation p.R2110C 0.17 probably_damaging(0.989) TCGA-UY-A9PB-01 16 3188462 3188462 G T ZNF213 Missense_Mutation p.G148V 0.27 deleterious(0.04) benign(0.282) TCGA-UY-A9PB-01 16 338091 338091 C T AXIN1 3'UTR 0.14 TCGA-UY-A9PB-01 16 46712958 46712958 C A VPS35 Missense_Mutation p.R206I 0.07 deleterious(0) possibly_damaging(0.858) TCGA-UY-A9PB-01 16 49671687 49671687 T C ZNF423 Missense_Mutation p.H459R 0.22 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 16 50118178 50118178 C T HEATR3 Silent p.L422L 0.38 TCGA-UY-A9PB-01 16 50707714 50707714 G T SNX20 Missense_Mutation p.T185K 0.18 deleterious(0.04) probably_damaging(0.983) TCGA-UY-A9PB-01 16 55527188 55527188 C T MMP2 Silent p.I485I 0.19 TCGA-UY-A9PB-01 16 66973191 66973191 C T CES2 Missense_Mutation p.S182F 0.26 tolerated(0.06) benign(0.012) TCGA-UY-A9PB-01 16 67761246 67761246 G C RANBP10 Silent p.L572L 0.17 TCGA-UY-A9PB-01 16 70564782 70564782 G C SF3B3 Missense_Mutation p.E178Q 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-UY-A9PB-01 16 71318284 71318284 C A CMTR2 Nonsense_Mutation p.E514* 0.16 TCGA-UY-A9PB-01 16 71792812 71792812 C T AP1G1 Silent p.L332L 0.34 TCGA-UY-A9PB-01 16 72110375 72110375 C T HPR Silent p.L148L 0.16 TCGA-UY-A9PB-01 16 727007 727007 A G RHBDL1 Missense_Mutation p.K220E 0.06 tolerated(0.46) benign(0.265) TCGA-UY-A9PB-01 16 76528861 76528861 G T CNTNAP4 Missense_Mutation p.W639L 0.23 deleterious(0.01) possibly_damaging(0.902) TCGA-UY-A9PB-01 16 88664598 88664598 G A ZC3H18 Nonsense_Mutation p.W234* 0.19 TCGA-UY-A9PB-01 16 88873546 88873546 C G CDT1 Missense_Mutation p.P404A 0.19 tolerated(0.13) benign(0.04) TCGA-UY-A9PB-01 16 90106791 90106791 C T GAS8 Silent p.L365L 0.13 TCGA-UY-A9PB-01 17 14110468 14110468 C G COX10 Missense_Mutation p.L424V 0.16 tolerated(0.15) probably_damaging(0.999) TCGA-UY-A9PB-01 17 16120559 16120559 C A PIGL Missense_Mutation p.L7M 0.14 deleterious(0.02) benign(0.184) TCGA-UY-A9PB-01 17 18061864 18061864 G A MYO15A Missense_Mutation p.D2999N 0.17 unknown(0) TCGA-UY-A9PB-01 17 18881130 18881130 C T FAM83G Missense_Mutation p.E617K 0.12 deleterious(0) benign(0.036) TCGA-UY-A9PB-01 17 20200324 20200324 C G SPECC1 Missense_Mutation p.F997L 0.47 tolerated(0.06) benign(0.042) TCGA-UY-A9PB-01 17 25949044 25949044 G C KSR1 3'UTR 0.14 TCGA-UY-A9PB-01 17 29214380 29214380 A C ATAD5 Missense_Mutation p.L1416F 0.13 deleterious(0.02) possibly_damaging(0.835) TCGA-UY-A9PB-01 17 3119740 3119740 T C OR1A1 Missense_Mutation p.Y276H 0.15 deleterious(0) probably_damaging(0.991) TCGA-UY-A9PB-01 17 33772372 33772372 T C SLFN13 Missense_Mutation p.K110E 0.27 deleterious(0) probably_damaging(0.964) TCGA-UY-A9PB-01 17 37885814 37885839 TTCTAGGGTTTCTCCATTACTGGCTC - MIEN1 Frame_Shift_Del p.R95Kfs*46 0.12 TCGA-UY-A9PB-01 17 38573039 38573039 A C TOP2A Missense_Mutation p.L44V 0.14 deleterious(0) probably_damaging(0.931) TCGA-UY-A9PB-01 17 41003394 41003394 C G AOC3 Missense_Mutation p.L12V 0.16 deleterious(0.04) possibly_damaging(0.636) TCGA-UY-A9PB-01 17 42850646 42850646 C G ADAM11 Silent p.L281L 0.17 TCGA-UY-A9PB-01 17 45412586 45412586 G C EFCAB13 Missense_Mutation p.D19H 0.21 tolerated(0.12) benign(0.043) TCGA-UY-A9PB-01 17 45821624 45821624 G - TBX21 Frame_Shift_Del p.G278Efs*25 0.12 TCGA-UY-A9PB-01 17 46628222 46628222 C T HOXB3 Missense_Mutation p.G257E 0.20 deleterious(0.01) possibly_damaging(0.901) TCGA-UY-A9PB-01 17 57937714 57937714 T A TUBD1 Missense_Mutation p.E444V 0.15 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PB-01 17 58504131 58504131 C T C17orf64 Missense_Mutation p.R128C 0.20 tolerated(0.23) benign(0.022) TCGA-UY-A9PB-01 17 61829295 61829295 C G CCDC47 Intron 0.15 TCGA-UY-A9PB-01 17 61843340 61843340 C A CCDC47 Nonsense_Mutation p.E66* 0.14 TCGA-UY-A9PB-01 17 66352862 66352862 C G ARSG Silent p.L207L 0.17 TCGA-UY-A9PB-01 17 72787117 72787117 G A TMEM104 Silent p.P123P 0.06 TCGA-UY-A9PB-01 17 72848182 72848182 G A GRIN2C Missense_Mutation p.P323L 0.12 tolerated(0.22) benign(0.097) TCGA-UY-A9PB-01 17 73126577 73126577 C T NT5C 3'UTR 0.10 TCGA-UY-A9PB-01 17 73746825 73746825 C T ITGB4 Missense_Mutation p.S1180L 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-UY-A9PB-01 17 7529824 7529824 C T SAT2 Missense_Mutation p.E152K 0.13 deleterious(0.01) possibly_damaging(0.734) TCGA-UY-A9PB-01 17 7577544 7577544 A G TP53 Missense_Mutation p.M246T 0.25 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 17 7579355 7579355 A C TP53 Missense_Mutation p.L111R 0.12 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PB-01 17 78263536 78263536 G A RNF213 Missense_Mutation p.D338N 0.22 benign(0.003) TCGA-UY-A9PB-01 17 79287753 79287753 G T TMEM105 Missense_Mutation p.L30M 0.22 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-UY-A9PB-01 17 80047252 80047252 C T FASN Silent p.V658V 0.11 TCGA-UY-A9PB-01 17 80210370 80210370 C T CSNK1D Missense_Mutation p.E226K 0.22 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-UY-A9PB-01 17 8396288 8396288 C A MYH10 Nonsense_Mutation p.E1422* 0.13 TCGA-UY-A9PB-01 18 10691239 10691239 G C PIEZO2 Missense_Mutation p.L2332V 0.12 deleterious(0) benign(0.394) TCGA-UY-A9PB-01 18 13056643 13056643 G A CEP192 Missense_Mutation p.V1352I 0.07 tolerated(0.25) benign(0.023) TCGA-UY-A9PB-01 18 13825988 13825988 T C MC5R Missense_Mutation p.V75A 0.16 deleterious(0) possibly_damaging(0.469) TCGA-UY-A9PB-01 18 21061262 21061262 C T RIOK3 3'UTR 0.17 TCGA-UY-A9PB-01 18 33283524 33283524 G A GALNT1 Missense_Mutation p.D484N 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-UY-A9PB-01 18 43664329 43664329 C T ATP5A1 Silent p.R527R 0.21 TCGA-UY-A9PB-01 18 44560704 44560704 C A TCEB3B Missense_Mutation p.S311I 0.15 tolerated(0.16) benign(0) TCGA-UY-A9PB-01 18 50705336 50705336 C A DCC Silent p.R475R 0.28 TCGA-UY-A9PB-01 18 5890217 5890217 G C TMEM200C Missense_Mutation p.L616V 0.16 tolerated(0.06) possibly_damaging(0.636) TCGA-UY-A9PB-01 18 672950 672950 G A TYMS Missense_Mutation p.E299K 0.25 tolerated(0.87) benign(0.009) TCGA-UY-A9PB-01 18 6975960 6975960 G C LAMA1 Silent p.L2155L 0.07 TCGA-UY-A9PB-01 18 74153895 74153895 C A ZNF516 Silent p.G372G 0.21 TCGA-UY-A9PB-01 18 9256432 9256432 C T ANKRD12 Missense_Mutation p.S1056L 0.15 tolerated(0.3) benign(0.002) TCGA-UY-A9PB-01 19 10747017 10747017 G A SLC44A2 Missense_Mutation p.E418K 0.26 tolerated(0.64) benign(0.016) TCGA-UY-A9PB-01 19 11032548 11032548 C G CARM1 3'UTR 0.25 TCGA-UY-A9PB-01 19 11289371 11289371 C A KANK2 Silent p.S425S 0.14 TCGA-UY-A9PB-01 19 11660189 11660189 C A CNN1 Silent p.R185R 0.05 TCGA-UY-A9PB-01 19 12126024 12126024 C T ZNF433 Missense_Mutation p.G553E 0.16 tolerated(1) benign(0.028) TCGA-UY-A9PB-01 19 12256197 12256197 C T ZNF625 Missense_Mutation p.S345N 0.14 tolerated(0.07) benign(0.154) TCGA-UY-A9PB-01 19 12691600 12691600 G C ZNF490 Missense_Mutation p.S430C 0.05 tolerated(0.18) benign(0.009) TCGA-UY-A9PB-01 19 12691907 12691907 G C ZNF490 Missense_Mutation p.H328D 0.09 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 19 12866258 12866258 C T BEST2 Silent p.L234L 0.07 TCGA-UY-A9PB-01 19 12995674 12995674 G C KLF1 3'UTR 0.17 TCGA-UY-A9PB-01 19 13050910 13050910 C T CALR Silent p.I147I 0.07 TCGA-UY-A9PB-01 19 15794549 15794549 C T CYP4F12 Silent p.F298F 0.04 TCGA-UY-A9PB-01 19 17264797 17264797 A G MYO9B Missense_Mutation p.Y340C 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-UY-A9PB-01 19 17644437 17644437 G A FAM129C Silent p.L149L 0.12 TCGA-UY-A9PB-01 19 17873533 17873533 C G FCHO1 Intron 0.10 TCGA-UY-A9PB-01 19 18327584 18327584 C T PDE4C Silent p.Q484Q 0.10 TCGA-UY-A9PB-01 19 19790740 19790740 A C ZNF101 Missense_Mutation p.K314N 0.11 tolerated(0.1) benign(0.223) TCGA-UY-A9PB-01 19 23316941 23316941 G A ZNF730 Silent p.L21L 0.04 TCGA-UY-A9PB-01 19 23544220 23544220 C T ZNF91 Missense_Mutation p.E521K 0.13 tolerated(0.68) probably_damaging(0.998) TCGA-UY-A9PB-01 19 23836173 23836173 G C ZNF675 Nonsense_Mutation p.S521* 0.05 TCGA-UY-A9PB-01 19 29699014 29699014 G C UQCRFS1 Missense_Mutation p.S89C 0.13 deleterious(0) possibly_damaging(0.789) TCGA-UY-A9PB-01 19 30934959 30934959 G T ZNF536 Missense_Mutation p.D164Y 0.22 tolerated(0.08) probably_damaging(1) TCGA-UY-A9PB-01 19 31025865 31025865 G T ZNF536 Missense_Mutation p.R761L 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-UY-A9PB-01 19 31039932 31039932 G C ZNF536 Missense_Mutation p.D1136H 0.12 deleterious_low_confidence(0.01) benign(0.399) TCGA-UY-A9PB-01 19 36431143 36431143 C A LRFN3 Nonsense_Mutation p.C272* 0.16 TCGA-UY-A9PB-01 19 38900725 38900725 C T RASGRP4 Silent p.P659P 0.16 TCGA-UY-A9PB-01 19 39019334 39019334 C T RYR1 Missense_Mutation p.S3678L 0.11 benign(0.044) TCGA-UY-A9PB-01 19 40331079 40331079 C A FBL Silent p.V86V 0.20 TCGA-UY-A9PB-01 19 41265497 41265497 T A SNRPA Silent p.A136A 0.11 TCGA-UY-A9PB-01 19 42342131 42342131 G C LYPD4 Missense_Mutation p.S139C 0.16 deleterious(0.01) possibly_damaging(0.708) TCGA-UY-A9PB-01 19 42907089 42907089 C G LIPE Missense_Mutation p.L879F 0.29 tolerated(0.06) benign(0.242) TCGA-UY-A9PB-01 19 44831693 44831693 G A ZNF112 Missense_Mutation p.H879Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PB-01 19 46289785 46289785 C T DMWD Silent p.K323K 0.14 TCGA-UY-A9PB-01 19 46295603 46295603 G T DMWD Missense_Mutation p.P138T 0.19 tolerated(0.66) possibly_damaging(0.908) TCGA-UY-A9PB-01 19 46417757 46417757 G A NANOS2 Silent p.F65F 0.16 TCGA-UY-A9PB-01 19 47349274 47349274 G A AP2S1 Silent p.D43D 0.17 TCGA-UY-A9PB-01 19 48866551 48866551 T C TMEM143 Missense_Mutation p.I87M 0.20 tolerated(0.16) probably_damaging(0.924) TCGA-UY-A9PB-01 19 49116416 49116416 C T FAM83E Missense_Mutation p.E72K 0.16 deleterious(0.04) benign(0.422) TCGA-UY-A9PB-01 19 50862323 50862323 G C NAPSA Missense_Mutation p.S327C 0.20 deleterious(0) probably_damaging(0.99) TCGA-UY-A9PB-01 19 50951611 50951611 G A MYBPC2 Missense_Mutation p.R479Q 0.11 tolerated(0.42) benign(0.094) TCGA-UY-A9PB-01 19 51021841 51021841 C T LRRC4B Missense_Mutation p.E377K 0.13 deleterious(0.01) probably_damaging(0.928) TCGA-UY-A9PB-01 19 51171680 51171680 C T SHANK1 Silent p.A1179A 0.24 TCGA-UY-A9PB-01 19 51561932 51561932 C A KLK13 Splice_Site p.X170_splice 0.21 TCGA-UY-A9PB-01 19 51768790 51768790 C A SIGLECL1 Missense_Mutation p.P64H 0.25 deleterious(0.02) benign(0.28) TCGA-UY-A9PB-01 19 52443461 52443461 G A ZNF613 Splice_Site p.X6_splice 0.19 TCGA-UY-A9PB-01 19 53269190 53269190 C G ZNF600 Missense_Mutation p.E607Q 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-UY-A9PB-01 19 53432064 53432064 C G ZNF321P 3'UTR 0.39 TCGA-UY-A9PB-01 19 54760421 54760421 A G LILRB5 Missense_Mutation p.Y96H 0.21 deleterious(0.02) probably_damaging(0.993) TCGA-UY-A9PB-01 19 55148343 55148343 G A LILRB1 3'UTR 0.08 TCGA-UY-A9PB-01 19 55298038 55298038 G T KIR2DL1 3'Flank 0.21 TCGA-UY-A9PB-01 19 55512340 55512340 C T NLRP2 3'UTR 0.17 TCGA-UY-A9PB-01 19 56235360 56235360 C G NLRP9 Missense_Mutation p.K715N 0.16 tolerated(0.55) benign(0.001) TCGA-UY-A9PB-01 19 56490847 56490847 G C NLRP8 Missense_Mutation p.L988F 0.10 deleterious(0.01) probably_damaging(0.962) TCGA-UY-A9PB-01 19 57058962 57058962 G A ZFP28 Missense_Mutation p.R129K 0.17 tolerated(0.32) benign(0.078) TCGA-UY-A9PB-01 19 57175989 57175989 G A ZNF835 Missense_Mutation p.P193L 0.21 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 19 57328257 57328257 G A PEG3 Missense_Mutation p.A518V 0.14 deleterious(0) possibly_damaging(0.85) TCGA-UY-A9PB-01 19 57641866 57641866 G C USP29 Missense_Mutation p.R608T 0.24 tolerated(0.58) possibly_damaging(0.71) TCGA-UY-A9PB-01 19 57641934 57641934 G C USP29 Missense_Mutation p.E631Q 0.25 tolerated(0.29) benign(0.142) TCGA-UY-A9PB-01 19 57743410 57743410 C T AURKC Silent p.L38L 0.24 TCGA-UY-A9PB-01 19 57956149 57956149 C T ZNF749 Nonsense_Mutation p.Q545* 0.23 TCGA-UY-A9PB-01 19 58490831 58490831 C T ZNF606 Missense_Mutation p.G406E 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-UY-A9PB-01 19 6452348 6452348 G T SLC25A23 Missense_Mutation p.A349E 0.23 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 19 7506593 7506593 G C ARHGEF18 Missense_Mutation p.Q199H 0.11 deleterious(0.05) benign(0.013) TCGA-UY-A9PB-01 19 856135 856135 G C ELANE Missense_Mutation p.D259H 0.13 tolerated(0.07) benign(0.003) TCGA-UY-A9PB-01 19 9064403 9064403 C T MUC16 Silent p.V7681V 0.18 TCGA-UY-A9PB-01 19 9271032 9271032 C T ZNF317 Silent p.L237L 0.07 TCGA-UY-A9PB-01 1 10459153 10459153 C T PGD 5'UTR 0.10 TCGA-UY-A9PB-01 1 10532452 10532452 G A DFFA Silent p.L22L 0.06 TCGA-UY-A9PB-01 1 11128121 11128121 T A EXOSC10 Missense_Mutation p.K857N 0.12 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-UY-A9PB-01 1 111991326 111991326 G C WDR77 Missense_Mutation p.F72L 0.10 tolerated(0.28) benign(0.098) TCGA-UY-A9PB-01 1 117559909 117559909 G A CD101 Missense_Mutation p.G476R 0.10 tolerated(0.65) benign(0.008) TCGA-UY-A9PB-01 1 11983355 11983355 C T KIAA2013 Missense_Mutation p.A409T 0.10 tolerated(0.07) benign(0.408) TCGA-UY-A9PB-01 1 120050093 120050093 G C HSD3B1 5'UTR 0.11 TCGA-UY-A9PB-01 1 12907422 12907422 C T HNRNPCL1 Missense_Mutation p.E241K 0.11 tolerated(0.05) benign(0.184) TCGA-UY-A9PB-01 1 12921141 12921141 A T PRAMEF2 Missense_Mutation p.K311M 0.12 tolerated(0.23) possibly_damaging(0.906) TCGA-UY-A9PB-01 1 145415439 145415439 T C HFE2 Silent p.Y86Y 0.14 TCGA-UY-A9PB-01 1 146758060 146758060 G A CHD1L Missense_Mutation p.E702K 0.12 tolerated(0.11) benign(0.059) TCGA-UY-A9PB-01 1 150967125 150967126 AG - ANXA9 Frame_Shift_Del p.R309Sfs*2 0.21 TCGA-UY-A9PB-01 1 151288551 151288551 G C PI4KB Nonsense_Mutation p.S148* 0.09 TCGA-UY-A9PB-01 1 152283791 152283791 A T FLG Missense_Mutation p.S1191T 0.10 benign(0.153) TCGA-UY-A9PB-01 1 15386730 15386730 G A KAZN Missense_Mutation p.E327K 0.15 tolerated(0.11) benign(0.166) TCGA-UY-A9PB-01 1 154317147 154317147 C T ATP8B2 Silent p.S757S 0.15 TCGA-UY-A9PB-01 1 154991117 154991117 G C DCST2 Missense_Mutation p.S742C 0.13 tolerated_low_confidence(0.12) benign(0.062) TCGA-UY-A9PB-01 1 156126264 156126264 C T SEMA4A Silent p.L67L 0.17 TCGA-UY-A9PB-01 1 156236065 156236065 A G SMG5 Silent p.S454S 0.14 TCGA-UY-A9PB-01 1 158326606 158326606 C T CD1E Nonsense_Mutation p.Q363* 0.15 TCGA-UY-A9PB-01 1 158650496 158650496 C G SPTA1 Missense_Mutation p.E185D 0.11 tolerated(0.36) probably_damaging(0.946) TCGA-UY-A9PB-01 1 159002320 159002320 A C IFI16 Missense_Mutation p.K390Q 0.09 tolerated(0.06) benign(0.291) TCGA-UY-A9PB-01 1 159557899 159557899 G - APCS Frame_Shift_Del p.K26Rfs*14 0.10 TCGA-UY-A9PB-01 1 159683625 159683625 G A CRP Missense_Mutation p.S122L 0.20 deleterious(0.05) benign(0.264) TCGA-UY-A9PB-01 1 16459672 16459672 C G EPHA2 Intron 0.21 TCGA-UY-A9PB-01 1 167097677 167097677 G A DUSP27 Silent p.R1103R 0.17 TCGA-UY-A9PB-01 1 175116066 175116066 G A TNN Splice_Site p.X1254_splice 0.09 TCGA-UY-A9PB-01 1 179363038 179363038 A T AXDND1 Missense_Mutation p.R288S 0.09 deleterious(0) possibly_damaging(0.849) TCGA-UY-A9PB-01 1 17961473 17961473 C T ARHGEF10L Missense_Mutation p.S630L 0.07 tolerated(0.06) benign(0.017) TCGA-UY-A9PB-01 1 17961491 17961491 C T ARHGEF10L Missense_Mutation p.S636F 0.08 tolerated(0.42) benign(0.281) TCGA-UY-A9PB-01 1 180885862 180885862 T A KIAA1614 Nonsense_Mutation p.L208* 0.12 TCGA-UY-A9PB-01 1 180885863 180885863 G T KIAA1614 Missense_Mutation p.L208F 0.12 deleterious(0.01) probably_damaging(0.978) TCGA-UY-A9PB-01 1 183908014 183908014 C T COLGALT2 Missense_Mutation p.D588N 0.13 tolerated(0.08) probably_damaging(0.996) TCGA-UY-A9PB-01 1 186141165 186141165 G A HMCN1 Missense_Mutation p.C5239Y 0.08 probably_damaging(0.996) TCGA-UY-A9PB-01 1 19566883 19566883 C T EMC1 Missense_Mutation p.E232K 0.09 tolerated(0.63) benign(0.004) TCGA-UY-A9PB-01 1 196748987 196748987 T C CFHR3 Missense_Mutation p.V105A 0.08 tolerated(0.49) benign(0.127) TCGA-UY-A9PB-01 1 196883648 196883648 G C CFHR4 Missense_Mutation p.E401Q 0.10 tolerated(0.31) benign(0.261) TCGA-UY-A9PB-01 1 197059408 197059408 G C ASPM Silent p.L3249L 0.12 TCGA-UY-A9PB-01 1 203669380 203669380 G C ATP2B4 Silent p.L232L 0.09 TCGA-UY-A9PB-01 1 203670021 203670021 G T ATP2B4 Nonsense_Mutation p.E291* 0.10 TCGA-UY-A9PB-01 1 214817934 214817934 C G CENPF Nonsense_Mutation p.S1674* 0.09 TCGA-UY-A9PB-01 1 21599236 21599236 C T ECE1 Missense_Mutation p.S150N 0.11 tolerated(1) benign(0.004) TCGA-UY-A9PB-01 1 221053787 221053787 G C HLX Silent p.L196L 0.16 TCGA-UY-A9PB-01 1 223568555 223568555 G C C1orf65 Missense_Mutation p.D580H 0.10 deleterious(0.01) probably_damaging(0.967) TCGA-UY-A9PB-01 1 226340170 226340170 G A ACBD3 Missense_Mutation p.S414L 0.07 deleterious(0.02) benign(0.246) TCGA-UY-A9PB-01 1 232144743 232144743 G T DISC1 Missense_Mutation p.W752L 0.13 tolerated(0.08) probably_damaging(0.923) TCGA-UY-A9PB-01 1 233394724 233394725 - T PCNXL2 Frame_Shift_Ins p.I295Nfs*22 0.16 TCGA-UY-A9PB-01 1 235605180 235605180 T A TBCE Missense_Mutation p.L441Q 0.23 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PB-01 1 237895391 237895391 G T RYR2 Missense_Mutation p.V3661F 0.11 benign(0.125) TCGA-UY-A9PB-01 1 237961396 237961396 G A RYR2 Missense_Mutation p.M4672I 0.18 benign(0.001) TCGA-UY-A9PB-01 1 238053885 238053885 C G ZP4 Silent p.V17V 0.22 TCGA-UY-A9PB-01 1 240255924 240255924 G A FMN2 Missense_Mutation p.G172E 0.22 unknown(0) TCGA-UY-A9PB-01 1 240370297 240370297 G A FMN2 Missense_Mutation p.E729K 0.09 unknown(0) TCGA-UY-A9PB-01 1 24121190 24121190 G A LYPLA2 Missense_Mutation p.E222K 0.12 tolerated(0.63) benign(0.031) TCGA-UY-A9PB-01 1 243327642 243327642 G C CEP170 Missense_Mutation p.S1207C 0.07 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PB-01 1 243858938 243858938 G C AKT3 Missense_Mutation p.Q43E 0.12 tolerated(1) probably_damaging(0.997) TCGA-UY-A9PB-01 1 247587339 247587339 C A NLRP3 Missense_Mutation p.S198R 0.11 tolerated(0.61) benign(0.003) TCGA-UY-A9PB-01 1 248366393 248366393 C A OR2M3 Missense_Mutation p.F8L 0.12 tolerated(0.58) benign(0.013) TCGA-UY-A9PB-01 1 248616410 248616410 C G OR2T2 Silent p.L104L 0.09 TCGA-UY-A9PB-01 1 26510261 26510261 G A CNKSR1 Silent p.R265R 0.06 TCGA-UY-A9PB-01 1 27094355 27094355 G A ARID1A Silent p.K1021K 0.18 TCGA-UY-A9PB-01 1 28167695 28167695 G A PPP1R8 Missense_Mutation p.D148N 0.10 tolerated(0.38) benign(0.004) TCGA-UY-A9PB-01 1 28280900 28280900 G A SMPDL3B Missense_Mutation p.G185R 0.11 tolerated(0.66) benign(0.009) TCGA-UY-A9PB-01 1 28285289 28285289 C G SMPDL3B Silent p.P436P 0.20 TCGA-UY-A9PB-01 1 2938988 2938988 C T ACTRT2 Silent p.D246D 0.16 TCGA-UY-A9PB-01 1 31191666 31191666 C T MATN1 Missense_Mutation p.E194K 0.12 tolerated(0.08) benign(0.073) TCGA-UY-A9PB-01 1 32164081 32164081 C T COL16A1 Intron 0.11 TCGA-UY-A9PB-01 1 33236455 33236455 G T KIAA1522 Missense_Mutation p.V559L 0.21 tolerated(0.34) unknown(0) TCGA-UY-A9PB-01 1 3425668 3425668 C T MEGF6 Missense_Mutation p.R500Q 0.20 deleterious(0.01) possibly_damaging(0.84) TCGA-UY-A9PB-01 1 37941116 37941116 G C ZC3H12A Missense_Mutation p.E7Q 0.16 deleterious_low_confidence(0.03) benign(0.082) TCGA-UY-A9PB-01 1 43851731 43851731 T G MED8 Missense_Mutation p.L220F 0.16 tolerated(0.19) benign(0.414) TCGA-UY-A9PB-01 1 45475789 45475789 C T HECTD3 Missense_Mutation p.V210I 0.12 tolerated(0.32) benign(0.01) TCGA-UY-A9PB-01 1 47609470 47609470 G A CYP4A22 Silent p.L224L 0.07 TCGA-UY-A9PB-01 1 55089109 55089110 CA - FAM151A 5'UTR 0.10 TCGA-UY-A9PB-01 1 78511988 78511988 C A GIPC2 Silent p.I70I 0.19 TCGA-UY-A9PB-01 1 85598713 85598713 T G WDR63 3'UTR 0.08 TCGA-UY-A9PB-01 1 86836725 86836725 C T ODF2L Silent p.L344L 0.13 TCGA-UY-A9PB-01 1 87040222 87040222 G T CLCA4 Splice_Site p.X490_splice 0.25 TCGA-UY-A9PB-01 1 92511160 92511160 C G EPHX4 Missense_Mutation p.P183A 0.07 deleterious(0) probably_damaging(0.988) TCGA-UY-A9PB-01 20 139611 139611 A G DEFB127 Silent p.Q82Q 0.20 TCGA-UY-A9PB-01 20 1551509 1551509 T A SIRPB1 Missense_Mutation p.K342N 0.06 deleterious(0.05) benign(0.042) TCGA-UY-A9PB-01 20 1638333 1638333 G T SIRPG Missense_Mutation p.P10T 0.14 tolerated(1) benign(0.011) TCGA-UY-A9PB-01 20 1638426 1638426 G T SIRPG 5'Flank 0.13 TCGA-UY-A9PB-01 20 17600958 17600958 C T RRBP1 Missense_Mutation p.E756K 0.14 tolerated(0.22) possibly_damaging(0.486) TCGA-UY-A9PB-01 20 20037350 20037350 G C C20orf26 Missense_Mutation p.R18T 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 20 2560638 2560638 G T TMC2 Missense_Mutation p.R257L 0.05 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 20 2778920 2778920 G C CPXM1 Silent p.G156G 0.16 TCGA-UY-A9PB-01 20 3026812 3026812 C T MRPS26 Missense_Mutation p.P33L 0.09 deleterious(0.02) benign(0.126) TCGA-UY-A9PB-01 20 30370172 30370172 A G TPX2 Missense_Mutation p.E392G 0.06 deleterious(0) probably_damaging(0.952) TCGA-UY-A9PB-01 20 31619551 31619551 G T BPIFB6 Splice_Site p.X33_splice 0.10 TCGA-UY-A9PB-01 20 32371544 32371544 C T ZNF341 Missense_Mutation p.P569S 0.13 tolerated(0.14) benign(0.028) TCGA-UY-A9PB-01 20 34041774 34041774 C T GDF5 Intron 0.19 TCGA-UY-A9PB-01 20 37356924 37356924 A G SLC32A1 Missense_Mutation p.K407R 0.12 tolerated(0.83) benign(0.003) TCGA-UY-A9PB-01 20 3842924 3842924 G A MAVS Silent p.T163T 0.07 TCGA-UY-A9PB-01 20 40735529 40735529 G C PTPRT Missense_Mutation p.A1096G 0.13 deleterious(0) probably_damaging(0.995) TCGA-UY-A9PB-01 20 42158997 42158997 C G L3MBTL1 Missense_Mutation p.S355C 0.10 tolerated(0.08) possibly_damaging(0.77) TCGA-UY-A9PB-01 20 44108298 44108298 C T WFDC2 Intron 0.12 TCGA-UY-A9PB-01 20 47295898 47295898 T A PREX1 Missense_Mutation p.K530I 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-UY-A9PB-01 20 51871206 51871206 T C TSHZ2 Silent p.G403G 0.15 TCGA-UY-A9PB-01 20 52788342 52788342 A G CYP24A1 Intron 0.42 TCGA-UY-A9PB-01 20 55111397 55111397 G C FAM209B Missense_Mutation p.G140A 0.16 tolerated(0.22) probably_damaging(0.996) TCGA-UY-A9PB-01 20 57251396 57251396 G A STX16 3'UTR 0.06 TCGA-UY-A9PB-01 20 57571732 57571732 C T CTSZ Missense_Mutation p.E255K 0.15 tolerated(0.14) benign(0.426) TCGA-UY-A9PB-01 20 58467061 58467061 G A SYCP2 Missense_Mutation p.S783L 0.09 tolerated(1) benign(0) TCGA-UY-A9PB-01 20 58467709 58467709 T C SYCP2 Missense_Mutation p.K614R 0.08 tolerated(0.07) benign(0.036) TCGA-UY-A9PB-01 20 6021776 6021776 G C LRRN4 Silent p.L705L 0.09 TCGA-UY-A9PB-01 20 60419814 60419814 G A CDH4 Missense_Mutation p.D223N 0.12 tolerated(0.59) benign(0.03) TCGA-UY-A9PB-01 20 61833723 61833723 G C YTHDF1 Missense_Mutation p.I523M 0.14 tolerated(0.17) probably_damaging(0.977) TCGA-UY-A9PB-01 21 10951328 10951328 A G TPTE Silent p.S128S 0.07 TCGA-UY-A9PB-01 21 28338352 28338352 G A ADAMTS5 Missense_Mutation p.T120M 0.15 tolerated(0.1) benign(0.005) TCGA-UY-A9PB-01 21 33975488 33975488 T C AP000275.65 Missense_Mutation p.I217V 0.10 tolerated(0.67) benign(0) TCGA-UY-A9PB-01 21 35209448 35209448 G C ITSN1 Intron 0.12 TCGA-UY-A9PB-01 21 40190548 40190548 G C ETS2 Missense_Mutation p.L263F 0.14 tolerated(0.12) benign(0.398) TCGA-UY-A9PB-01 21 46925817 46925817 C T COL18A1 Silent p.L1231L 0.10 TCGA-UY-A9PB-01 21 47581370 47581370 G T SPATC1L Missense_Mutation p.L316M 0.18 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 21 47836358 47836358 G C PCNT Missense_Mutation p.D2176H 0.11 benign(0.304) TCGA-UY-A9PB-01 22 18378125 18378125 C G MICAL3 Missense_Mutation p.K458N 0.32 probably_damaging(0.968) TCGA-UY-A9PB-01 22 23503124 23503124 G A RAB36 Silent p.V292V 0.37 TCGA-UY-A9PB-01 22 26351204 26351204 G A MYO18B Silent p.A2010A 0.15 TCGA-UY-A9PB-01 22 26692943 26692943 C G SEZ6L Silent p.L353L 0.60 TCGA-UY-A9PB-01 22 29176964 29176964 G A CCDC117 Missense_Mutation p.E90K 0.40 deleterious(0.01) possibly_damaging(0.801) TCGA-UY-A9PB-01 22 29456557 29456557 G A C22orf31 Missense_Mutation p.P93L 0.28 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-UY-A9PB-01 22 31137218 31137218 G C OSBP2 Missense_Mutation p.D239H 0.34 deleterious(0) probably_damaging(0.961) TCGA-UY-A9PB-01 22 38328804 38328804 G C MICALL1 Splice_Site p.X715_splice 0.33 TCGA-UY-A9PB-01 22 38823100 38823100 G A KCNJ4 Silent p.P346P 0.28 TCGA-UY-A9PB-01 22 41565534 41565534 T G EP300 Missense_Mutation p.S1400R 0.38 probably_damaging(0.999) TCGA-UY-A9PB-01 22 50728767 50728767 C T PLXNB2 Missense_Mutation p.E83K 0.27 tolerated(0.4) possibly_damaging(0.809) TCGA-UY-A9PB-01 2 108507221 108507221 C A RGPD4 3'UTR 0.14 TCGA-UY-A9PB-01 2 118575086 118575086 G C DDX18 Missense_Mutation p.R51T 0.11 tolerated_low_confidence(0.61) benign(0.013) TCGA-UY-A9PB-01 2 122520583 122520583 G A TSN Missense_Mutation p.E126K 0.16 tolerated(1) benign(0.002) TCGA-UY-A9PB-01 2 127808375 127808375 C G BIN1 Intron 0.19 TCGA-UY-A9PB-01 2 128471204 128471204 G A WDR33 Silent p.F1087F 0.11 TCGA-UY-A9PB-01 2 133531452 133531452 C T NCKAP5 Missense_Mutation p.E1689K 0.14 tolerated(0.18) benign(0.053) TCGA-UY-A9PB-01 2 133547666 133547666 G A NCKAP5 Missense_Mutation p.S341L 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A9PB-01 2 135779295 135779295 C T MAP3K19 Missense_Mutation p.S43N 0.07 deleterious_low_confidence(0.04) benign(0.086) TCGA-UY-A9PB-01 2 138033555 138033555 C T THSD7B Missense_Mutation p.T820M 0.12 tolerated(0.37) possibly_damaging(0.897) TCGA-UY-A9PB-01 2 1418219 1418219 G A TPO Missense_Mutation p.M13I 0.16 tolerated(0.5) benign(0.001) TCGA-UY-A9PB-01 2 152214226 152214226 C A TNFAIP6 Missense_Mutation p.Q16K 0.18 tolerated(0.93) benign(0.008) TCGA-UY-A9PB-01 2 153483149 153483149 G C FMNL2 Silent p.V691V 0.19 TCGA-UY-A9PB-01 2 15415871 15415871 G A NBAS Nonsense_Mutation p.Q1821* 0.12 TCGA-UY-A9PB-01 2 160876702 160876702 G A PLA2R1 Missense_Mutation p.S456F 0.12 deleterious(0) possibly_damaging(0.905) TCGA-UY-A9PB-01 2 1652204 1652204 C A PXDN Silent p.P1116P 0.32 TCGA-UY-A9PB-01 2 165994442 165994442 C A SCN3A Nonsense_Mutation p.E780* 0.18 TCGA-UY-A9PB-01 2 167334164 167334164 T C SCN7A Missense_Mutation p.K15E 0.20 tolerated(0.18) benign(0.002) TCGA-UY-A9PB-01 2 170058302 170058302 T C LRP2 Missense_Mutation p.Y2763C 0.17 probably_damaging(0.989) TCGA-UY-A9PB-01 2 173354351 173354351 G A ITGA6 Missense_Mutation p.E882K 0.21 tolerated(0.06) benign(0.096) TCGA-UY-A9PB-01 2 176965482 176965482 C A HOXD12 Silent p.L269L 0.14 TCGA-UY-A9PB-01 2 178364367 178364367 C T AGPS Nonsense_Mutation p.Q462* 0.23 TCGA-UY-A9PB-01 2 179428292 179428292 T - TTN Frame_Shift_Del p.T27523Hfs*2 0.22 TCGA-UY-A9PB-01 2 179454137 179454137 T A TTN Missense_Mutation p.D20772V 0.21 TCGA-UY-A9PB-01 2 179454355 179454355 T A TTN Silent p.P20699P 0.14 TCGA-UY-A9PB-01 2 179570024 179570024 G C TTN Silent p.L9827L 0.21 TCGA-UY-A9PB-01 2 179590301 179590301 A G TTN Missense_Mutation p.I6877T 0.09 TCGA-UY-A9PB-01 2 179598077 179598077 C T TTN Missense_Mutation p.V5315I 0.12 TCGA-UY-A9PB-01 2 179621334 179621334 T C TTN Silent p.T3623T 0.11 TCGA-UY-A9PB-01 2 179641731 179641731 A G TTN Silent p.T1620T 0.14 TCGA-UY-A9PB-01 2 179644066 179644066 C G TTN Missense_Mutation p.E1285Q 0.15 TCGA-UY-A9PB-01 2 183640138 183640138 G A DNAJC10 Silent p.K787K 0.25 TCGA-UY-A9PB-01 2 189849960 189849960 C A COL3A1 Missense_Mutation p.P107H 0.14 unknown(0) TCGA-UY-A9PB-01 2 201790637 201790637 C T ORC2 Missense_Mutation p.E357K 0.14 tolerated(0.06) benign(0.259) TCGA-UY-A9PB-01 2 220033428 220033428 G A SLC23A3 Missense_Mutation p.S215F 0.16 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PB-01 2 220047169 220047169 G C FAM134A Missense_Mutation p.E484Q 0.25 tolerated(0.13) probably_damaging(0.99) TCGA-UY-A9PB-01 2 220283311 220283311 A G DES Missense_Mutation p.K43E 0.19 tolerated(0.41) unknown(0) TCGA-UY-A9PB-01 2 220315985 220315985 C T SPEG Silent p.A747A 0.15 TCGA-UY-A9PB-01 2 220413795 220413795 G A TMEM198 Intron 0.14 TCGA-UY-A9PB-01 2 223168891 223168891 G C CCDC140 Missense_Mutation p.L90F 0.12 tolerated_low_confidence(0.07) possibly_damaging(0.765) TCGA-UY-A9PB-01 2 228884017 228884017 C G SPHKAP Missense_Mutation p.R518T 0.12 deleterious(0) possibly_damaging(0.821) TCGA-UY-A9PB-01 2 232392925 232392925 G A NMUR1 Silent p.A269A 0.15 TCGA-UY-A9PB-01 2 233899562 233899562 C T NEU2 Missense_Mutation p.P313L 0.16 tolerated(0.28) benign(0.411) TCGA-UY-A9PB-01 2 234357967 234357967 G A DGKD Silent p.L611L 0.10 TCGA-UY-A9PB-01 2 237997262 237997262 A G COPS8 Missense_Mutation p.Y55C 0.11 deleterious(0) probably_damaging(0.99) TCGA-UY-A9PB-01 2 241500377 241500377 G T DUSP28 Silent p.A92A 0.30 TCGA-UY-A9PB-01 2 241570248 241570248 C T GPR35 Silent p.P324P 0.10 TCGA-UY-A9PB-01 2 29294359 29294359 G A C2orf71 Silent p.D923D 0.23 TCGA-UY-A9PB-01 2 43571351 43571351 G A THADA Missense_Mutation p.S1418L 0.18 tolerated(0.67) benign(0.001) TCGA-UY-A9PB-01 2 44170906 44170906 C T LRPPRC Silent p.L808L 0.11 TCGA-UY-A9PB-01 2 48602466 48602466 G T FOXN2 Missense_Mutation p.D394Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 2 71429644 71429644 C T PAIP2B Missense_Mutation p.E26K 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-UY-A9PB-01 2 71795175 71795175 A G DYSF Missense_Mutation p.Q887R 0.18 tolerated(0.33) benign(0.005) TCGA-UY-A9PB-01 2 74438815 74438815 G C MTHFD2 Intron 0.12 TCGA-UY-A9PB-01 2 75923441 75923441 C A GCFC2 Nonsense_Mutation p.E240* 0.15 TCGA-UY-A9PB-01 3 101391041 101391041 G C ZBTB11 Silent p.V109V 0.10 TCGA-UY-A9PB-01 3 10401787 10401787 G A ATP2B2 Silent p.A560A 0.12 TCGA-UY-A9PB-01 3 108110646 108110646 C A MYH15 Silent p.L1817L 0.15 TCGA-UY-A9PB-01 3 11058972 11058972 C T SLC6A1 Silent p.D25D 0.06 TCGA-UY-A9PB-01 3 11067493 11067493 C T SLC6A1 Missense_Mutation p.S295L 0.07 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PB-01 3 11374508 11374508 G A ATG7 Missense_Mutation p.R277K 0.44 tolerated(0.14) benign(0.091) TCGA-UY-A9PB-01 3 121264639 121264639 G T POLQ Missense_Mutation p.A29D 0.32 tolerated_low_confidence(0.42) unknown(0) TCGA-UY-A9PB-01 3 121366264 121366264 C T HCLS1 Missense_Mutation p.E64K 0.14 deleterious(0) benign(0.292) TCGA-UY-A9PB-01 3 122591388 122591388 T C DIRC2 Missense_Mutation p.F422S 0.17 deleterious(0) possibly_damaging(0.646) TCGA-UY-A9PB-01 3 122630799 122630799 T C SEMA5B Missense_Mutation p.Q1059R 0.15 deleterious(0) possibly_damaging(0.598) TCGA-UY-A9PB-01 3 124413326 124413326 C T AC080008.1 3'Flank 0.22 TCGA-UY-A9PB-01 3 125286259 125286259 G A OSBPL11 Nonsense_Mutation p.Q283* 0.13 TCGA-UY-A9PB-01 3 12571345 12571345 G C TSEN2 Missense_Mutation p.L407F 0.40 deleterious(0) probably_damaging(0.99) TCGA-UY-A9PB-01 3 126180852 126180852 C T ZXDC Silent p.G551G 0.29 TCGA-UY-A9PB-01 3 129389566 129389566 G A TMCC1 Missense_Mutation p.A373V 0.10 deleterious(0) probably_damaging(0.995) TCGA-UY-A9PB-01 3 12977046 12977046 G A IQSEC1 Silent p.T504T 0.10 TCGA-UY-A9PB-01 3 130463468 130463468 G C PIK3R4 Missense_Mutation p.P199A 0.21 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 3 132198104 132198104 C G DNAJC13 Missense_Mutation p.L915V 0.10 tolerated(0.14) benign(0.064) TCGA-UY-A9PB-01 3 132432057 132432057 T C NPHP3 Missense_Mutation p.D344G 0.14 deleterious(0.01) benign(0.432) TCGA-UY-A9PB-01 3 138739003 138739003 C A PRR23B Silent p.R167R 0.11 TCGA-UY-A9PB-01 3 140123413 140123413 A G CLSTN2 Missense_Mutation p.I148V 0.11 tolerated(0.48) benign(0.289) TCGA-UY-A9PB-01 3 140397084 140397084 A T TRIM42 Missense_Mutation p.M5L 0.14 tolerated_low_confidence(0.06) unknown(0) TCGA-UY-A9PB-01 3 142523320 142523320 T G TRPC1 Missense_Mutation p.W668G 0.14 deleterious(0) probably_damaging(0.993) TCGA-UY-A9PB-01 3 147108798 147108798 C T ZIC4 Silent p.S358S 0.11 TCGA-UY-A9PB-01 3 148563270 148563270 G T CPB1 Nonsense_Mutation p.E280* 0.16 TCGA-UY-A9PB-01 3 152058723 152058723 G A TMEM14E 5'UTR 0.12 TCGA-UY-A9PB-01 3 155241769 155241769 C T PLCH1 Missense_Mutation p.G451R 0.11 deleterious(0) probably_damaging(0.966) TCGA-UY-A9PB-01 3 157213120 157213120 G T VEPH1 Missense_Mutation p.L7M 0.15 tolerated(0.07) benign(0.099) TCGA-UY-A9PB-01 3 157841704 157841704 C T RSRC1 Nonsense_Mutation p.R82* 0.07 TCGA-UY-A9PB-01 3 164776855 164776855 T C SI Missense_Mutation p.I432V 0.08 tolerated(0.34) benign(0.026) TCGA-UY-A9PB-01 3 164906095 164906095 C A SLITRK3 Missense_Mutation p.A842S 0.15 tolerated_low_confidence(0.08) benign(0.005) TCGA-UY-A9PB-01 3 164906418 164906418 G - SLITRK3 Frame_Shift_Del p.P734Lfs*59 0.12 TCGA-UY-A9PB-01 3 172165399 172165399 G A GHSR Intron 0.18 TCGA-UY-A9PB-01 3 183041140 183041140 C T MCF2L2 Splice_Site p.X163_splice 0.14 TCGA-UY-A9PB-01 3 183439740 183439740 C T YEATS2 Missense_Mutation p.S118L 0.12 deleterious(0.03) benign(0.443) TCGA-UY-A9PB-01 3 183873439 183873439 A T DVL3 Missense_Mutation p.I6F 0.10 deleterious(0.03) possibly_damaging(0.803) TCGA-UY-A9PB-01 3 184021746 184021746 T C PSMD2 Silent p.L445L 0.13 TCGA-UY-A9PB-01 3 185363232 185363232 C T IGF2BP2 3'UTR 0.25 TCGA-UY-A9PB-01 3 185798861 185798861 A G ETV5 Silent p.Y112Y 0.11 TCGA-UY-A9PB-01 3 186370280 186370280 G A FETUB Missense_Mutation p.E337K 0.16 deleterious(0.03) possibly_damaging(0.489) TCGA-UY-A9PB-01 3 190936662 190936662 G C OSTN Missense_Mutation p.E77Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 3 31871657 31871657 G A OSBPL10 Missense_Mutation p.P202S 0.18 tolerated(0.12) probably_damaging(0.928) TCGA-UY-A9PB-01 3 36779215 36779215 A T DCLK3 Silent p.T312T 0.16 TCGA-UY-A9PB-01 3 42730205 42730205 G A KLHL40 Missense_Mutation p.D473N 0.17 tolerated(0.18) benign(0.001) TCGA-UY-A9PB-01 3 49927494 49927494 C T MST1R Splice_Site p.X1271_splice 0.10 TCGA-UY-A9PB-01 3 52945041 52945041 A C SFMBT1 Silent p.S628S 0.25 TCGA-UY-A9PB-01 3 64640081 64640081 C G ADAMTS9 Missense_Mutation p.E422Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-UY-A9PB-01 3 89521633 89521633 G T EPHA3 Missense_Mutation p.D904Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PB-01 3 93781961 93781961 C G NSUN3 5'UTR 0.15 TCGA-UY-A9PB-01 4 104640361 104640361 A G TACR3 Missense_Mutation p.C158R 0.17 deleterious(0.01) probably_damaging(1) TCGA-UY-A9PB-01 4 115997675 115997675 G A NDST4 Missense_Mutation p.P173L 0.26 tolerated(1) benign(0.002) TCGA-UY-A9PB-01 4 120182879 120182879 A G USP53 Missense_Mutation p.R278G 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A9PB-01 4 122078354 122078354 G C TNIP3 Silent p.L163L 0.11 TCGA-UY-A9PB-01 4 125590813 125590813 C G ANKRD50 Missense_Mutation p.D1207H 0.09 deleterious(0.01) possibly_damaging(0.592) TCGA-UY-A9PB-01 4 126389788 126389788 T A FAT4 Missense_Mutation p.S4007R 0.15 benign(0.015) TCGA-UY-A9PB-01 4 141888947 141888947 C T RNF150 Missense_Mutation p.V189M 0.20 deleterious(0) possibly_damaging(0.748) TCGA-UY-A9PB-01 4 144922373 144922373 G A GYPB Missense_Mutation p.S34L 0.30 tolerated(0.19) possibly_damaging(0.849) TCGA-UY-A9PB-01 4 152020782 152020783 - T RPS3A 5'UTR 0.13 TCGA-UY-A9PB-01 4 152592233 152592233 C G PET112 3'UTR 0.21 TCGA-UY-A9PB-01 4 170017636 170017636 G A SH3RF1 3'UTR 0.12 TCGA-UY-A9PB-01 4 174292606 174292606 G T SAP30 Missense_Mutation p.K91N 0.09 deleterious(0.04) probably_damaging(0.987) TCGA-UY-A9PB-01 4 185310037 185310037 G C IRF2 Missense_Mutation p.Q309E 0.14 tolerated(0.89) benign(0) TCGA-UY-A9PB-01 4 25419310 25419311 TA - ANAPC4 Frame_Shift_Del p.M717Efs*28 0.13 TCGA-UY-A9PB-01 4 2828984 2828984 C T SH3BP2 Silent p.F209F 0.06 TCGA-UY-A9PB-01 4 38020001 38020001 C T TBC1D1 Silent p.I303I 0.09 TCGA-UY-A9PB-01 4 38830534 38830534 C T TLR6 Silent p.E187E 0.23 TCGA-UY-A9PB-01 4 47405721 47405721 C A GABRB1 Silent p.V276V 0.17 TCGA-UY-A9PB-01 4 47405725 47405725 C A GABRB1 Missense_Mutation p.L278I 0.19 deleterious(0.04) probably_damaging(0.975) TCGA-UY-A9PB-01 4 55564578 55564578 C G KIT Missense_Mutation p.L156V 0.08 tolerated(0.1) possibly_damaging(0.58) TCGA-UY-A9PB-01 4 57215515 57215515 G C AASDH Missense_Mutation p.S801C 0.07 deleterious(0.03) benign(0.209) TCGA-UY-A9PB-01 4 69184562 69184562 C T YTHDC1 Missense_Mutation p.R568Q 0.11 deleterious(0.03) possibly_damaging(0.565) TCGA-UY-A9PB-01 4 69202817 69202817 T C YTHDC1 Missense_Mutation p.S271G 0.27 tolerated(0.52) benign(0.005) TCGA-UY-A9PB-01 4 8456477 8456477 C A TRMT44 Silent p.G380G 0.14 TCGA-UY-A9PB-01 4 85778 85778 G C Z95704.2 RNA 0.21 TCGA-UY-A9PB-01 4 87703405 87703405 C A PTPN13 Nonsense_Mutation p.S2010* 0.11 TCGA-UY-A9PB-01 4 88104368 88104368 C T KLHL8 Silent p.R313R 0.09 TCGA-UY-A9PB-01 4 88986959 88986959 C T PKD2 Silent p.Y762Y 0.11 TCGA-UY-A9PB-01 5 114604637 114604637 C G CCDC112 Missense_Mutation p.E497Q 0.08 deleterious(0.02) benign(0.351) TCGA-UY-A9PB-01 5 1210588 1210588 G A SLC6A19 Missense_Mutation p.V125M 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-UY-A9PB-01 5 126732263 126732263 G A MEGF10 Missense_Mutation p.R151Q 0.11 tolerated(0.14) probably_damaging(0.93) TCGA-UY-A9PB-01 5 129520603 129520603 G A CHSY3 Missense_Mutation p.E590K 0.21 tolerated(0.2) benign(0.023) TCGA-UY-A9PB-01 5 132069917 132069917 G A KIF3A Missense_Mutation p.S87F 0.16 tolerated(0.07) benign(0.089) TCGA-UY-A9PB-01 5 138760785 138760785 G A DNAJC18 Missense_Mutation p.S193L 0.18 deleterious(0) possibly_damaging(0.477) TCGA-UY-A9PB-01 5 139060445 139060446 - C CXXC5 Frame_Shift_Ins p.L114Pfs*7 0.08 TCGA-UY-A9PB-01 5 139903725 139903725 A G ANKHD1 Silent p.K1464K 0.18 TCGA-UY-A9PB-01 5 140572551 140572551 A T PCDHB10 Silent p.I142I 0.17 TCGA-UY-A9PB-01 5 140855693 140855693 G C PCDHGC3 Missense_Mutation p.E4Q 0.19 tolerated_low_confidence(0.32) benign(0.07) TCGA-UY-A9PB-01 5 140865855 140865855 T C PCDHGC4 Missense_Mutation p.I372T 0.07 deleterious(0) probably_damaging(0.978) TCGA-UY-A9PB-01 5 141309188 141309188 C G KIAA0141 Missense_Mutation p.P152A 0.19 deleterious(0.01) possibly_damaging(0.706) TCGA-UY-A9PB-01 5 147516561 147516561 G A SPINK5 3'UTR 0.16 TCGA-UY-A9PB-01 5 150885417 150885417 G A FAT2 Silent p.P4253P 0.10 TCGA-UY-A9PB-01 5 158747486 158747486 G C IL12B Silent p.L175L 0.12 TCGA-UY-A9PB-01 5 161128787 161128787 C T GABRA6 3'UTR 0.08 TCGA-UY-A9PB-01 5 178139264 178139264 G C ZNF354A Missense_Mutation p.Q539E 0.14 tolerated(0.19) possibly_damaging(0.477) TCGA-UY-A9PB-01 5 178140182 178140182 C T ZNF354A Missense_Mutation p.E233K 0.11 deleterious(0.05) benign(0.217) TCGA-UY-A9PB-01 5 180040067 180040067 G A FLT4 Silent p.C1125C 0.15 TCGA-UY-A9PB-01 5 34042950 34042950 T C C1QTNF3 Missense_Mutation p.Q94R 0.19 deleterious_low_confidence(0.04) benign(0.069) TCGA-UY-A9PB-01 5 38463107 38463107 T C EGFLAM Missense_Mutation p.Y965H 0.20 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 5 41009383 41009383 G A MROH2B Missense_Mutation p.S1140L 0.18 deleterious(0.01) benign(0.108) TCGA-UY-A9PB-01 5 41058217 41058217 G A MROH2B Missense_Mutation p.P235L 0.18 deleterious(0) possibly_damaging(0.499) TCGA-UY-A9PB-01 5 45262088 45262088 C G HCN1 Missense_Mutation p.E870Q 0.17 tolerated_low_confidence(0.09) benign(0.034) TCGA-UY-A9PB-01 5 54281222 54281222 G A ESM1 Missense_Mutation p.R42C 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-UY-A9PB-01 5 57790740 57790740 G C GAPT Missense_Mutation p.G126A 0.08 deleterious(0.01) benign(0.099) TCGA-UY-A9PB-01 5 68578687 68578687 C G CCDC125 Missense_Mutation p.D469H 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-UY-A9PB-01 5 78742913 78742913 G A HOMER1 Missense_Mutation p.S117L 0.17 deleterious(0) benign(0.079) TCGA-UY-A9PB-01 5 80419487 80419487 C A RASGRF2 Silent p.R833R 0.14 TCGA-UY-A9PB-01 5 90059211 90059211 C A GPR98 Silent p.V4070V 0.21 TCGA-UY-A9PB-01 6 100403934 100403934 A T MCHR2 Missense_Mutation p.S30R 0.10 tolerated(0.16) benign(0.001) TCGA-UY-A9PB-01 6 10874873 10874873 A G GCM2 Silent p.Y292Y 0.08 TCGA-UY-A9PB-01 6 109854505 109854505 C G AK9 Missense_Mutation p.K1173N 0.09 tolerated(0.47) benign(0.033) TCGA-UY-A9PB-01 6 110300605 110300605 T C GPR6 Missense_Mutation p.I97T 0.21 deleterious(0) possibly_damaging(0.721) TCGA-UY-A9PB-01 6 111631230 111631230 C T REV3L Silent p.G2956G 0.11 TCGA-UY-A9PB-01 6 11201194 11201194 G A NEDD9 Intron 0.10 TCGA-UY-A9PB-01 6 122792932 122792932 C T SERINC1 5'UTR 0.20 TCGA-UY-A9PB-01 6 130399756 130399756 G A L3MBTL3 Missense_Mutation p.R433K 0.11 tolerated(0.38) benign(0.015) TCGA-UY-A9PB-01 6 137166802 137166802 C G PEX7 Missense_Mutation p.S130C 0.16 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 6 137815136 137815136 G A OLIG3 Missense_Mutation p.R58W 0.10 deleterious(0.01) possibly_damaging(0.539) TCGA-UY-A9PB-01 6 144769841 144769841 G A UTRN Missense_Mutation p.E670K 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-UY-A9PB-01 6 148852778 148852778 C T SASH1 Silent p.L515L 0.08 TCGA-UY-A9PB-01 6 149795566 149795566 C T ZC3H12D Silent p.Q38Q 0.10 TCGA-UY-A9PB-01 6 150023254 150023254 C T LATS1 Silent p.R3R 0.15 TCGA-UY-A9PB-01 6 151674731 151674731 A G AKAP12 Silent p.Q1735Q 0.11 TCGA-UY-A9PB-01 6 152539535 152539535 C T SYNE1 Missense_Mutation p.G7350R 0.12 probably_damaging(0.932) TCGA-UY-A9PB-01 6 152631541 152631541 G C SYNE1 Missense_Mutation p.S5670C 0.07 benign(0.013) TCGA-UY-A9PB-01 6 153323592 153323592 C A MTRF1L Nonsense_Mutation p.E77* 0.17 TCGA-UY-A9PB-01 6 155578016 155578016 G A TIAM2 Missense_Mutation p.E1623K 0.11 tolerated_low_confidence(0.2) benign(0.027) TCGA-UY-A9PB-01 6 158882713 158882713 C A TULP4 Missense_Mutation p.F326L 0.16 deleterious(0.03) probably_damaging(0.977) TCGA-UY-A9PB-01 6 161173245 161173245 A G PLG Missense_Mutation p.T742A 0.07 tolerated(0.24) benign(0.183) TCGA-UY-A9PB-01 6 165756992 165756992 C T PDE10A Splice_Site p.X662_splice 0.10 TCGA-UY-A9PB-01 6 168440866 168440866 C G KIF25 Missense_Mutation p.L206V 0.08 tolerated(0.59) benign(0.196) TCGA-UY-A9PB-01 6 25983672 25983672 C A TRIM38 Silent p.L385L 0.10 TCGA-UY-A9PB-01 6 26022254 26022254 C T HIST1H4A 3'UTR 0.13 TCGA-UY-A9PB-01 6 26124557 26124557 C T HIST1H2AC Missense_Mutation p.R33C 0.16 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-UY-A9PB-01 6 26252158 26252158 G T HIST1H2BH Nonsense_Mutation p.E94* 0.07 TCGA-UY-A9PB-01 6 26273356 26273356 C G HIST1H2BI Silent p.P51P 0.17 TCGA-UY-A9PB-01 6 26468874 26468874 C G BTN2A1 3'UTR 0.16 TCGA-UY-A9PB-01 6 27778029 27778029 G T HIST1H3H Nonsense_Mutation p.E60* 0.06 TCGA-UY-A9PB-01 6 27806523 27806523 G T HIST1H2BN Missense_Mutation p.K28N 0.13 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-UY-A9PB-01 6 27806819 27806819 G A HIST1H2BN Silent p.%3D 0.08 TCGA-UY-A9PB-01 6 30711704 30711704 G T IER3 3'UTR 0.14 TCGA-UY-A9PB-01 6 30864625 30864625 G A DDR1 Missense_Mutation p.E618K 0.17 deleterious(0) possibly_damaging(0.484) TCGA-UY-A9PB-01 6 30887570 30887570 G - VARS2 Frame_Shift_Del p.Q402Sfs*20 0.14 TCGA-UY-A9PB-01 6 30954614 30954614 G A MUC21 Missense_Mutation p.G221E 0.11 tolerated(0.14) unknown(0) TCGA-UY-A9PB-01 6 31110307 31110307 C T CCHCR1 3'UTR 0.13 TCGA-UY-A9PB-01 6 31544334 31544334 C T TNF Silent p.I70I 0.13 TCGA-UY-A9PB-01 6 31726356 31726356 G A MSH5 Missense_Mutation p.R392H 0.18 tolerated(0.11) benign(0.111) TCGA-UY-A9PB-01 6 32784787 32784787 T C HLA-DOB 5'UTR 0.13 TCGA-UY-A9PB-01 6 3289995 3289995 C G SLC22A23 Intron 0.23 TCGA-UY-A9PB-01 6 33246105 33246105 C T B3GALT4 Silent p.L303L 0.11 TCGA-UY-A9PB-01 6 33264044 33264044 C G RGL2 Missense_Mutation p.E177Q 0.07 tolerated(0.09) probably_damaging(0.991) TCGA-UY-A9PB-01 6 33284043 33284043 G C ZBTB22 Missense_Mutation p.F217L 0.11 tolerated(0.34) benign(0.081) TCGA-UY-A9PB-01 6 33374170 33374170 C T KIFC1 Silent p.L578L 0.21 TCGA-UY-A9PB-01 6 37280705 37280705 G A TBC1D22B Missense_Mutation p.E332K 0.12 deleterious(0.01) possibly_damaging(0.837) TCGA-UY-A9PB-01 6 38256066 38256066 T C BTBD9 Missense_Mutation p.Y479C 0.16 deleterious(0) probably_damaging(0.993) TCGA-UY-A9PB-01 6 40399932 40399932 T G LRFN2 Silent p.T307T 0.09 TCGA-UY-A9PB-01 6 41160555 41160555 C T TREML2 Silent p.K290K 0.11 TCGA-UY-A9PB-01 6 41704510 41704510 G C PGC 3'UTR 0.20 TCGA-UY-A9PB-01 6 42214273 42214273 T C TRERF1 Missense_Mutation p.K889R 0.16 tolerated(0.17) benign(0.292) TCGA-UY-A9PB-01 6 43193613 43193613 G A DNPH1 Missense_Mutation p.S128L 0.15 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 6 44221474 44221474 G A HSP90AB1 3'UTR 0.12 TCGA-UY-A9PB-01 6 47254278 47254278 G C TNFRSF21 Silent p.L50L 0.13 TCGA-UY-A9PB-01 6 6175047 6175047 T C F13A1 Missense_Mutation p.K505E 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-UY-A9PB-01 6 64410286 64410286 T C PHF3 Missense_Mutation p.L1010P 0.24 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 6 70890248 70890248 G C COL19A1 Silent p.P904P 0.08 TCGA-UY-A9PB-01 6 74497132 74497132 C T CD109 Missense_Mutation p.S838L 0.18 deleterious(0) possibly_damaging(0.842) TCGA-UY-A9PB-01 6 84311052 84311052 G C SNAP91 Nonsense_Mutation p.S421* 0.23 TCGA-UY-A9PB-01 6 85446895 85446895 C A TBX18 Missense_Mutation p.Q444H 0.10 tolerated(0.17) possibly_damaging(0.459) TCGA-UY-A9PB-01 6 90384231 90384231 T C MDN1 Missense_Mutation p.Q4280R 0.25 probably_damaging(0.982) TCGA-UY-A9PB-01 6 99797053 99797053 T A FAXC Missense_Mutation p.T66S 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.475) TCGA-UY-A9PB-01 7 100030607 100030607 C T MEPCE Silent p.L579L 0.20 TCGA-UY-A9PB-01 7 100683867 100683867 C T MUC17 Missense_Mutation p.P3057L 0.07 probably_damaging(0.991) TCGA-UY-A9PB-01 7 100816750 100816750 C A NAT16 Nonsense_Mutation p.E122* 0.24 TCGA-UY-A9PB-01 7 111368600 111368600 C T DOCK4 Silent p.P1877P 0.21 TCGA-UY-A9PB-01 7 117351644 117351644 C G CTTNBP2 Missense_Mutation p.E1647Q 0.05 deleterious(0.01) benign(0.244) TCGA-UY-A9PB-01 7 121652735 121652735 C T PTPRZ1 Missense_Mutation p.P1212L 0.09 deleterious_low_confidence(0.01) benign(0.193) TCGA-UY-A9PB-01 7 123508368 123508368 T C HYAL4 Missense_Mutation p.V14A 0.18 deleterious_low_confidence(0.02) benign(0.116) TCGA-UY-A9PB-01 7 127894789 127894789 G A LEP Nonsense_Mutation p.W159* 0.07 TCGA-UY-A9PB-01 7 129311370 129311370 A G NRF1 Missense_Mutation p.T109A 0.08 deleterious(0.01) possibly_damaging(0.861) TCGA-UY-A9PB-01 7 130357622 130357622 G A TSGA13 Missense_Mutation p.P161L 0.07 deleterious(0.03) possibly_damaging(0.851) TCGA-UY-A9PB-01 7 134222984 134222984 C T AKR1B10 Silent p.V260V 0.20 TCGA-UY-A9PB-01 7 138978168 138978168 C T UBN2 Missense_Mutation p.S1287L 0.08 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-UY-A9PB-01 7 139819006 139819006 C T KDM7A Missense_Mutation p.E385K 0.18 deleterious(0) possibly_damaging(0.865) TCGA-UY-A9PB-01 7 150747842 150747842 C T ASIC3 Intron 0.14 TCGA-UY-A9PB-01 7 152346004 152346004 A T XRCC2 Missense_Mutation p.L189Q 0.17 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 7 158581075 158581075 G C ESYT2 Missense_Mutation p.I254M 0.21 deleterious(0) possibly_damaging(0.583) TCGA-UY-A9PB-01 7 158662584 158662584 C G WDR60 Silent p.L18L 0.16 TCGA-UY-A9PB-01 7 1594987 1594988 - C TMEM184A Frame_Shift_Ins p.A45Gfs*108 0.18 TCGA-UY-A9PB-01 7 21857932 21857932 G T DNAH11 Missense_Mutation p.G3563C 0.15 probably_damaging(0.986) TCGA-UY-A9PB-01 7 23306210 23306210 T C GPNMB Missense_Mutation p.F377L 0.09 deleterious(0.01) possibly_damaging(0.826) TCGA-UY-A9PB-01 7 27211646 27211646 T C HOXA10 Missense_Mutation p.I369V 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-UY-A9PB-01 7 31793058 31793058 C A PDE1C Silent p.L750L 0.09 TCGA-UY-A9PB-01 7 38402483 38402483 G A TRGV2 Silent p.Y112Y 0.07 TCGA-UY-A9PB-01 7 43484467 43484467 C G HECW1 Missense_Mutation p.L566V 0.16 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-UY-A9PB-01 7 6210578 6210578 G A CYTH3 Silent p.I198I 0.27 TCGA-UY-A9PB-01 7 6456198 6456198 G A DAGLB Intron 0.38 TCGA-UY-A9PB-01 7 66264316 66264316 G A KCTD7 Silent p.L245L 0.16 TCGA-UY-A9PB-01 7 6820512 6820512 G C RSPH10B2 Missense_Mutation p.Q534H 0.17 tolerated(1) benign(0.006) TCGA-UY-A9PB-01 7 76026887 76026887 G A SRCRB4D Silent p.G272G 0.31 TCGA-UY-A9PB-01 7 76110031 76110031 G C DTX2 Missense_Mutation p.D69H 0.20 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 7 82581179 82581179 A T PCLO Silent p.V3030V 0.11 TCGA-UY-A9PB-01 7 82585070 82585070 T C PCLO Silent p.S1733S 0.33 TCGA-UY-A9PB-01 7 99569553 99569553 G C AZGP1 Silent p.G51G 0.11 TCGA-UY-A9PB-01 7 99669710 99669710 C G ZNF3 Missense_Mutation p.E133Q 0.21 tolerated(0.28) benign(0.001) TCGA-UY-A9PB-01 7 99758321 99758321 G A GAL3ST4 Missense_Mutation p.P231S 0.15 tolerated(0.19) benign(0.016) TCGA-UY-A9PB-01 8 100832284 100832284 A G VPS13B Silent p.L3001L 0.21 TCGA-UY-A9PB-01 8 101237409 101237409 G C SPAG1 Missense_Mutation p.R566T 0.16 deleterious(0) probably_damaging(0.917) TCGA-UY-A9PB-01 8 101733709 101733709 C A PABPC1 Missense_Mutation p.G35W 0.15 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 8 110587080 110587080 C A SYBU 3'UTR 0.11 TCGA-UY-A9PB-01 8 120759105 120759105 C G TAF2 Missense_Mutation p.R983T 0.45 tolerated(0.18) benign(0.145) TCGA-UY-A9PB-01 8 126061370 126061370 G A KIAA0196 Missense_Mutation p.R753C 0.14 deleterious(0) probably_damaging(0.984) TCGA-UY-A9PB-01 8 131124450 131124450 C T ASAP1 Missense_Mutation p.R764Q 0.24 deleterious(0.04) probably_damaging(0.968) TCGA-UY-A9PB-01 8 133141754 133141754 G T KCNQ3 Missense_Mutation p.L792M 0.16 tolerated(0.18) possibly_damaging(0.674) TCGA-UY-A9PB-01 8 139647263 139647263 G T COL22A1 Missense_Mutation p.P1200H 0.15 unknown(0) TCGA-UY-A9PB-01 8 195249 195249 G A ZNF596 Missense_Mutation p.M134I 0.31 tolerated(0.3) benign(0.001) TCGA-UY-A9PB-01 8 25708192 25708192 C T EBF2 Silent p.Q538Q 0.22 TCGA-UY-A9PB-01 8 30701061 30701061 G T TEX15 Missense_Mutation p.L1825M 0.26 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 8 31498063 31498063 G A NRG1 Nonsense_Mutation p.W41* 0.33 TCGA-UY-A9PB-01 8 52321629 52321629 G A PXDNL Missense_Mutation p.P852L 0.12 deleterious(0) possibly_damaging(0.612) TCGA-UY-A9PB-01 8 69031743 69031743 C T PREX2 Silent p.F1166F 0.13 TCGA-UY-A9PB-01 8 70744345 70744345 G A SLCO5A1 Silent p.F188F 0.13 TCGA-UY-A9PB-01 8 70981594 70981594 G T PRDM14 Missense_Mutation p.Q168K 0.08 tolerated(0.07) benign(0.115) TCGA-UY-A9PB-01 8 88249322 88249322 A G CNBD1 Silent p.L251L 0.11 TCGA-UY-A9PB-01 8 92355619 92355619 A G SLC26A7 Silent p.S355S 0.26 TCGA-UY-A9PB-01 8 95543242 95543242 G C KIAA1429 Missense_Mutation p.P186A 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A9PB-01 8 98155425 98155425 G C CPQ 3'UTR 0.10 TCGA-UY-A9PB-01 9 100079439 100079439 C T CCDC180 Silent p.S340S 0.11 TCGA-UY-A9PB-01 9 107379998 107379998 A G OR13C9 Missense_Mutation p.V163A 0.14 tolerated(1) benign(0.058) TCGA-UY-A9PB-01 9 110249974 110249974 G A KLF4 Missense_Mutation p.S234L 0.27 deleterious(0) possibly_damaging(0.841) TCGA-UY-A9PB-01 9 115421656 115421656 C G KIAA1958 Missense_Mutation p.D486E 0.18 tolerated(1) possibly_damaging(0.794) TCGA-UY-A9PB-01 9 121929629 121929629 C A BRINP1 Silent p.V673V 0.13 TCGA-UY-A9PB-01 9 121929630 121929630 A C BRINP1 Missense_Mutation p.V673G 0.13 deleterious(0) probably_damaging(0.927) TCGA-UY-A9PB-01 9 123850620 123850620 C G CNTRL Missense_Mutation p.Q6E 0.10 benign(0.003) TCGA-UY-A9PB-01 9 125330565 125330565 C G OR1L8 Missense_Mutation p.L64F 0.11 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PB-01 9 130479963 130479963 C T TTC16 Missense_Mutation p.S113L 0.25 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 9 131730868 131730868 A G NUP188 Silent p.A223A 0.08 TCGA-UY-A9PB-01 9 131825905 131825905 G C FAM73B Missense_Mutation p.E389Q 0.20 tolerated(0.39) possibly_damaging(0.59) TCGA-UY-A9PB-01 9 134463179 134463179 C G RAPGEF1 Missense_Mutation p.E891D 0.14 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 9 135554356 135554356 G A GTF3C4 Silent p.L450L 0.16 TCGA-UY-A9PB-01 9 136583823 136583823 C G SARDH Intron 0.15 TCGA-UY-A9PB-01 9 137717640 137717640 G A COL5A1 Missense_Mutation p.E1653K 0.10 unknown(0) TCGA-UY-A9PB-01 9 138676709 138676709 G A KCNT1 Missense_Mutation p.E1044K 0.14 tolerated(0.08) benign(0.063) TCGA-UY-A9PB-01 9 139286436 139286436 T C SNAPC4 Silent p.A311A 0.11 TCGA-UY-A9PB-01 9 15724939 15724939 C G CCDC171 Missense_Mutation p.Q553E 0.14 deleterious(0) benign(0.005) TCGA-UY-A9PB-01 9 21186902 21186902 C G IFNA4 3'UTR 0.14 TCGA-UY-A9PB-01 9 34107456 34107456 C G DCAF12 Missense_Mutation p.E147D 0.23 deleterious(0.03) benign(0.418) TCGA-UY-A9PB-01 9 35043225 35043225 C A C9orf131 Missense_Mutation p.P200H 0.09 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 9 35043226 35043226 C A C9orf131 Silent p.P200P 0.09 TCGA-UY-A9PB-01 9 36100371 36100371 G A RECK Missense_Mutation p.G377R 0.10 deleterious(0) possibly_damaging(0.648) TCGA-UY-A9PB-01 9 36923361 36923361 T C PAX5 Missense_Mutation p.I301V 0.15 tolerated(1) benign(0.004) TCGA-UY-A9PB-01 9 71532569 71532569 G C PIP5K1B Missense_Mutation p.D293H 0.27 deleterious(0) probably_damaging(0.978) TCGA-UY-A9PB-01 9 7174717 7174717 G C KDM4C Missense_Mutation p.Q1053H 0.14 tolerated_low_confidence(0.16) benign(0.037) TCGA-UY-A9PB-01 9 77112871 77112871 G T RORB 5'UTR 0.22 TCGA-UY-A9PB-01 9 78506150 78506150 T C PCSK5 Missense_Mutation p.V18A 0.22 tolerated(0.09) benign(0.108) TCGA-UY-A9PB-01 9 78506220 78506220 C G PCSK5 Silent p.V41V 0.10 TCGA-UY-A9PB-01 9 916855 916855 C A DMRT1 Silent p.P305P 0.19 TCGA-UY-A9PB-01 9 99799628 99799628 C T CTSV Missense_Mutation p.R101K 0.10 tolerated(1) benign(0) TCGA-UY-A9PB-01 X 10535154 10535154 C A MID1 Missense_Mutation p.C145F 0.25 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 X 114869218 114869218 C G PLS3 Missense_Mutation p.S203C 0.28 deleterious(0) probably_damaging(1) TCGA-UY-A9PB-01 X 115574827 115574827 G A SLC6A14 Silent p.V175V 0.17 TCGA-UY-A9PB-01 X 115590059 115590059 G A SLC6A14 Missense_Mutation p.D623N 0.30 tolerated(0.19) benign(0.003) TCGA-UY-A9PB-01 X 119059259 119059259 C T NKAP Missense_Mutation p.R391Q 0.27 tolerated(0.16) unknown(0) TCGA-UY-A9PB-01 X 13058008 13058008 C T FAM9C Silent p.L119L 0.27 TCGA-UY-A9PB-01 X 130678454 130678454 T A OR13H1 Missense_Mutation p.M136K 0.32 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PB-01 X 148586589 148586589 C T IDS Missense_Mutation p.E27K 0.38 tolerated(0.83) benign(0.014) TCGA-UY-A9PB-01 X 151806689 151806689 G A GABRQ Silent p.V11V 0.21 TCGA-UY-A9PB-01 X 18824617 18824617 C T PPEF1 Nonsense_Mutation p.Q450* 0.33 TCGA-UY-A9PB-01 X 2209621 2209621 C - DHRSX Frame_Shift_Del p.A104Lfs*3 0.20 TCGA-UY-A9PB-01 X 27999385 27999385 G T DCAF8L1 Missense_Mutation p.P23T 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.71) TCGA-UY-A9PB-01 X 306408 306408 C G PPP2R3B Splice_Site p.X294_splice 0.09 TCGA-UY-A9PB-01 X 3240959 3240959 T C MXRA5 Missense_Mutation p.T923A 0.13 tolerated(0.29) benign(0.001) TCGA-UY-A9PB-01 X 41027283 41027283 T G USP9X Missense_Mutation p.I816M 0.32 deleterious(0) probably_damaging(0.964) TCGA-UY-A9PB-01 X 41027293 41027293 T G USP9X Missense_Mutation p.F820V 0.26 tolerated(0.45) probably_damaging(0.942) TCGA-UY-A9PB-01 X 41088555 41088555 G C USP9X Missense_Mutation p.D2371H 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-UY-A9PB-01 X 43592037 43592037 C T MAOA Silent p.I349I 0.21 TCGA-UY-A9PB-01 X 49853459 49853459 C T CLCN5 Silent p.T554T 0.32 TCGA-UY-A9PB-01 X 53106820 53106820 C G GPR173 Silent p.V339V 0.20 TCGA-UY-A9PB-01 X 53621517 53621517 G A HUWE1 Missense_Mutation p.P1149S 0.29 probably_damaging(0.995) TCGA-UY-A9PB-01 X 57619546 57619546 G A ZXDB Missense_Mutation p.M355I 0.24 tolerated(0.05) benign(0.18) TCGA-UY-A9PB-01 X 66905853 66905853 G A AR Silent p.G590G 0.22 TCGA-UY-A9PB-01 X 69283040 69283040 G A OTUD6A Silent p.L222L 0.29 TCGA-UY-A9PB-01 X 69561733 69561733 G C KIF4A Silent p.L406L 0.29 TCGA-UY-A9PB-01 X 70462851 70462851 C T ZMYM3 Silent p.L1172L 0.17 TCGA-UY-A9PB-01 X 70464170 70464170 C T ZMYM3 Missense_Mutation p.D1088N 0.31 deleterious(0.01) benign(0.101) TCGA-UY-A9PB-01 X 70472882 70472882 C T ZMYM3 Missense_Mutation p.G75E 0.21 tolerated_low_confidence(0.38) possibly_damaging(0.709) TCGA-UY-A9PB-01 X 79938035 79938035 C T BRWD3 Silent p.K1442K 0.33 TCGA-UY-A9PB-01 X 8502368 8502368 G A KAL1 Missense_Mutation p.S659L 0.17 tolerated_low_confidence(0.34) benign(0.013) TCGA-UY-A9PB-01 X 86071034 86071034 C G DACH2 Intron 0.15 TCGA-UY-A9PB-01 Y 5605543 5605544 AC - PCDH11Y Frame_Shift_Del p.Q1196Dfs*67 0.31 TCGA-UY-A9PD-01 10 124377583 124377583 C T DMBT1 Nonsense_Mutation p.R1519* 0.23 TCGA-UY-A9PD-01 10 127697025 127697025 C G FANK1 Missense_Mutation p.S252C 0.26 tolerated(0.12) probably_damaging(0.999) TCGA-UY-A9PD-01 10 20568808 20568808 C T PLXDC2 3'UTR 0.10 TCGA-UY-A9PD-01 10 26315413 26315413 C T MYO3A Missense_Mutation p.T302M 0.09 tolerated(1) benign(0) TCGA-UY-A9PD-01 10 26789932 26789932 T A APBB1IP Missense_Mutation p.N115K 0.56 tolerated(0.08) benign(0.164) TCGA-UY-A9PD-01 10 31799678 31799678 G C ZEB1 Missense_Mutation p.E188Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 10 32344886 32344886 C T KIF5B Missense_Mutation p.E6K 0.50 deleterious(0) probably_damaging(0.92) TCGA-UY-A9PD-01 10 468822 468822 C T DIP2C Silent p.Q182Q 0.55 TCGA-UY-A9PD-01 10 47087094 47087094 T C NPY4R Missense_Mutation p.M104T 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-UY-A9PD-01 10 73921375 73921375 C T ASCC1 Missense_Mutation p.G211R 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A9PD-01 10 74234918 74234918 C T MICU1 Silent p.L291L 0.27 TCGA-UY-A9PD-01 10 75528623 75528623 T - SEC24C Frame_Shift_Del p.V747Lfs*6 0.24 TCGA-UY-A9PD-01 10 81070901 81070901 G C ZMIZ1 Missense_Mutation p.G1019A 0.27 benign(0.079) TCGA-UY-A9PD-01 10 81317116 81317116 C T SFTPA2 Missense_Mutation p.R199H 0.19 tolerated(0.57) benign(0.004) TCGA-UY-A9PD-01 10 89624120 89624120 C T PTEN 5'UTR 0.19 TCGA-UY-A9PD-01 11 117395574 117395574 C T DSCAML1 Missense_Mutation p.E355K 0.23 tolerated(0.29) possibly_damaging(0.856) TCGA-UY-A9PD-01 11 118378252 118378252 G A KMT2A Missense_Mutation p.G3588E 0.31 benign(0.075) TCGA-UY-A9PD-01 11 118827600 118827600 C A UPK2 Missense_Mutation p.N28K 0.36 deleterious(0.01) possibly_damaging(0.859) TCGA-UY-A9PD-01 11 119181591 119181591 C G MCAM Missense_Mutation p.E556D 0.38 deleterious(0.02) benign(0.079) TCGA-UY-A9PD-01 11 122944475 122944475 C T CLMP Missense_Mutation p.A277T 0.37 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 11 124007310 124007310 C T VWA5A Silent p.L518L 0.41 TCGA-UY-A9PD-01 11 124180536 124180536 G T OR8D1 Missense_Mutation p.L43M 0.14 deleterious(0.04) possibly_damaging(0.776) TCGA-UY-A9PD-01 11 13395701 13395701 A C ARNTL Missense_Mutation p.Y375S 0.35 deleterious(0) benign(0.377) TCGA-UY-A9PD-01 11 134050984 134050984 G A NCAPD3 Silent p.D849D 0.41 TCGA-UY-A9PD-01 11 32417902 32417902 C T WT1 Missense_Mutation p.E384K 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-UY-A9PD-01 11 33374737 33374737 A G HIPK3 Missense_Mutation p.T1091A 0.21 tolerated(0.45) benign(0.001) TCGA-UY-A9PD-01 11 4703800 4703800 C T OR51E2 Missense_Mutation p.V48I 0.44 tolerated(1) benign(0.016) TCGA-UY-A9PD-01 11 48328197 48328197 G C OR4S1 Silent p.L141L 0.14 TCGA-UY-A9PD-01 11 60557967 60557967 G C MS4A10 Missense_Mutation p.K53N 0.18 deleterious(0.02) benign(0) TCGA-UY-A9PD-01 11 61083866 61083866 C T DDB1 Splice_Site p.X434_splice 0.19 TCGA-UY-A9PD-01 11 61188952 61188952 G A CPSF7 Silent p.P104P 0.43 TCGA-UY-A9PD-01 11 62394122 62394122 G A GANAB Missense_Mutation p.P833L 0.14 deleterious(0.01) possibly_damaging(0.816) TCGA-UY-A9PD-01 11 64360946 64360946 C T SLC22A12 Silent p.F192F 0.21 TCGA-UY-A9PD-01 11 65308027 65308027 G A LTBP3 Silent p.N1012N 0.34 TCGA-UY-A9PD-01 11 68031187 68031187 C T C11orf24 Missense_Mutation p.E17K 0.24 tolerated(0.65) unknown(0) TCGA-UY-A9PD-01 11 74717221 74717221 C G NEU3 Missense_Mutation p.P357R 0.39 tolerated(0.44) benign(0.02) TCGA-UY-A9PD-01 11 75379325 75379325 G A MAP6 Silent p.F30F 0.23 TCGA-UY-A9PD-01 11 75379326 75379326 A G MAP6 Missense_Mutation p.F30S 0.22 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PD-01 11 76372291 76372291 T C LRRC32 Missense_Mutation p.S116G 0.40 tolerated(0.58) benign(0.002) TCGA-UY-A9PD-01 11 92532714 92532714 G A FAT3 Missense_Mutation p.V2179I 0.11 probably_damaging(0.987) TCGA-UY-A9PD-01 12 104380761 104380761 A T TDG Missense_Mutation p.S376C 0.15 deleterious_low_confidence(0.04) benign(0.345) TCGA-UY-A9PD-01 12 104742275 104742275 C T TXNRD1 3'UTR 0.16 TCGA-UY-A9PD-01 12 106466592 106466592 G A NUAK1 Silent p.Y203Y 0.27 TCGA-UY-A9PD-01 12 119563229 119563229 C A SRRM4 Missense_Mutation p.R187S 0.23 deleterious_low_confidence(0.02) unknown(0) TCGA-UY-A9PD-01 12 124265627 124265628 - T DNAH10 Frame_Shift_Ins p.L149Ffs*24 0.31 TCGA-UY-A9PD-01 12 130648326 130648326 G A FZD10 Missense_Mutation p.R280H 0.28 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 12 21358811 21358811 A G SLCO1B1 Silent p.P447P 0.27 TCGA-UY-A9PD-01 12 2622025 2622025 A G CACNA1C Missense_Mutation p.Q422R 0.45 deleterious(0.04) possibly_damaging(0.905) TCGA-UY-A9PD-01 12 29608244 29608244 C T OVCH1 Nonsense_Mutation p.W792* 0.48 TCGA-UY-A9PD-01 12 38710616 38710616 G C ALG10B 5'UTR 0.18 TCGA-UY-A9PD-01 12 41585313 41585313 G A PDZRN4 Silent p.L234L 0.29 TCGA-UY-A9PD-01 12 43840442 43840442 G C ADAMTS20 Missense_Mutation p.S718C 0.36 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 12 4461813 4461813 A G C12orf5 Missense_Mutation p.M257V 0.21 tolerated(0.28) benign(0) TCGA-UY-A9PD-01 12 5020601 5020601 C T KCNA1 Silent p.P19P 0.23 TCGA-UY-A9PD-01 12 53001990 53001990 G A KRT73 Missense_Mutation p.T538I 0.21 tolerated_low_confidence(0.06) benign(0.003) TCGA-UY-A9PD-01 12 53699842 53699842 G C C12orf10 Missense_Mutation p.E214Q 0.19 tolerated(0.14) benign(0.179) TCGA-UY-A9PD-01 12 55688290 55688290 T C OR6C6 Missense_Mutation p.M243V 0.50 deleterious_low_confidence(0.02) benign(0.026) TCGA-UY-A9PD-01 12 56638568 56638568 C G ANKRD52 Missense_Mutation p.A864P 0.20 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 12 57560824 57560824 C T LRP1 Missense_Mutation p.S970L 0.14 benign(0.244) TCGA-UY-A9PD-01 12 64664432 64664432 C G C12orf56 Silent p.L389L 0.14 TCGA-UY-A9PD-01 12 64833039 64833039 C T XPOT Nonsense_Mutation p.Q917* 0.37 TCGA-UY-A9PD-01 12 88508932 88508932 C G CEP290 Missense_Mutation p.E618Q 0.69 probably_damaging(0.969) TCGA-UY-A9PD-01 12 99447088 99447088 C T ANKS1B Splice_Site p.X876_splice 0.33 TCGA-UY-A9PD-01 13 113488948 113488948 A G ATP11A Missense_Mutation p.I535M 0.42 deleterious(0.01) possibly_damaging(0.839) TCGA-UY-A9PD-01 13 24515533 24515533 C T ANKRD20A19P RNA 0.36 TCGA-UY-A9PD-01 13 25144750 25144750 G A RP11-556N21.1 RNA 0.41 TCGA-UY-A9PD-01 13 28368088 28368088 G A GSX1 3'UTR 0.14 TCGA-UY-A9PD-01 13 38211308 38211308 C A TRPC4 Missense_Mutation p.R894L 0.26 tolerated_low_confidence(0.1) benign(0.13) TCGA-UY-A9PD-01 13 42793924 42793924 C T DGKH Nonsense_Mutation p.Q1146* 0.12 TCGA-UY-A9PD-01 13 70370906 70370906 C A KLHL1 Missense_Mutation p.V535F 0.08 tolerated(0.21) benign(0.105) TCGA-UY-A9PD-01 13 79911415 79911415 G A RBM26 Missense_Mutation p.S825L 0.29 deleterious(0.01) possibly_damaging(0.857) TCGA-UY-A9PD-01 14 100599082 100599082 A T EVL Missense_Mutation p.K289M 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-UY-A9PD-01 14 105411429 105411429 C T AHNAK2 Silent p.A3453A 0.36 TCGA-UY-A9PD-01 14 106110995 106110995 C T IGHG2 Missense_Mutation p.A45T 0.20 tolerated(0.19) benign(0.105) TCGA-UY-A9PD-01 14 24044935 24044935 G A JPH4 Silent p.A370A 0.40 TCGA-UY-A9PD-01 14 35465981 35465981 T A SRP54 Silent p.I22I 0.23 TCGA-UY-A9PD-01 14 37969198 37969198 A G MIPOL1 Missense_Mutation p.R373G 0.29 deleterious(0) possibly_damaging(0.894) TCGA-UY-A9PD-01 14 50272845 50272845 G T NEMF Missense_Mutation p.P584H 0.44 deleterious(0.01) possibly_damaging(0.759) TCGA-UY-A9PD-01 14 61446601 61446601 G C TRMT5 Missense_Mutation p.I5M 0.22 deleterious_low_confidence(0.01) benign(0.22) TCGA-UY-A9PD-01 14 70252996 70252996 A G SLC10A1 Missense_Mutation p.C129R 0.40 deleterious(0.05) benign(0.139) TCGA-UY-A9PD-01 14 81669097 81669097 G A GTF2A1 Intron 0.27 TCGA-UY-A9PD-01 14 92949030 92949030 G C SLC24A4 Missense_Mutation p.R421T 0.22 tolerated(0.4) benign(0.003) TCGA-UY-A9PD-01 15 28273089 28273089 G C OCA2 Missense_Mutation p.S148C 0.29 deleterious(0) possibly_damaging(0.853) TCGA-UY-A9PD-01 15 65555626 65555626 G T PARP16 Silent p.T184T 0.24 TCGA-UY-A9PD-01 15 66621341 66621341 T C DIS3L Silent p.N745N 0.45 TCGA-UY-A9PD-01 15 73862585 73862585 G C NPTN Silent p.L340L 0.13 TCGA-UY-A9PD-01 15 75305132 75305132 A G SCAMP5 Missense_Mutation p.Y41C 0.47 deleterious(0) probably_damaging(0.986) TCGA-UY-A9PD-01 15 80215233 80215233 C G C15orf37 Missense_Mutation p.P40A 0.23 possibly_damaging(0.728) TCGA-UY-A9PD-01 15 89449078 89449078 G A MFGE8 Missense_Mutation p.P199S 0.24 deleterious(0.03) possibly_damaging(0.612) TCGA-UY-A9PD-01 15 91522500 91522500 T C PRC1 Missense_Mutation p.Q332R 0.42 tolerated(0.16) benign(0.008) TCGA-UY-A9PD-01 16 16271479 16271479 C T ABCC6 Missense_Mutation p.R807Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 16 22545856 22545856 C T NPIPB5 Nonsense_Mutation p.Q518* 0.07 TCGA-UY-A9PD-01 16 22926558 22926558 G A HS3ST2 Nonsense_Mutation p.W260* 0.21 TCGA-UY-A9PD-01 16 28187233 28187233 T C XPO6 Missense_Mutation p.T131A 0.46 tolerated(0.06) benign(0.141) TCGA-UY-A9PD-01 16 30666842 30666842 G T PRR14 Missense_Mutation p.R445L 0.33 deleterious(0.02) benign(0.362) TCGA-UY-A9PD-01 16 31228191 31228191 G A PYDC1 Silent p.T53T 0.16 TCGA-UY-A9PD-01 16 57181596 57181596 C T CPNE2 3'UTR 0.43 TCGA-UY-A9PD-01 16 57496646 57496646 G T POLR2C Missense_Mutation p.A4S 0.36 tolerated(0.08) benign(0.305) TCGA-UY-A9PD-01 16 71663299 71663299 C T MARVELD3 Missense_Mutation p.S166L 0.15 tolerated(0.06) benign(0.008) TCGA-UY-A9PD-01 16 81187862 81187862 C T PKD1L2 RNA 0.28 TCGA-UY-A9PD-01 16 84623790 84623790 G A COTL1 Missense_Mutation p.T80M 0.19 deleterious(0) probably_damaging(0.995) TCGA-UY-A9PD-01 16 89785447 89785447 C A VPS9D1 Nonsense_Mutation p.E55* 0.14 TCGA-UY-A9PD-01 17 15950388 15950388 C T NCOR1 Missense_Mutation p.G2186R 0.25 possibly_damaging(0.674) TCGA-UY-A9PD-01 17 15976866 15976866 C T NCOR1 Missense_Mutation p.E1230K 0.21 probably_damaging(0.991) TCGA-UY-A9PD-01 17 18043880 18043880 G A MYO15A Missense_Mutation p.R1754H 0.21 unknown(0) TCGA-UY-A9PD-01 17 21477533 21477533 G A AC138710.1 5'Flank 0.24 TCGA-UY-A9PD-01 17 26958858 26958858 G A KIAA0100 Missense_Mutation p.T1359I 0.05 deleterious(0.02) benign(0.017) TCGA-UY-A9PD-01 17 26966420 26966420 C T KIAA0100 Missense_Mutation p.R381Q 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-UY-A9PD-01 17 33479988 33479988 A G UNC45B Missense_Mutation p.D153G 0.10 tolerated(0.06) benign(0.121) TCGA-UY-A9PD-01 17 34165461 34165461 C G TAF15 Missense_Mutation p.L273V 0.31 tolerated_low_confidence(0.05) probably_damaging(0.967) TCGA-UY-A9PD-01 17 36365139 36365139 C T RP11-1407O15.2 Silent p.L152L 0.09 TCGA-UY-A9PD-01 17 37607294 37607294 C T MED1 Missense_Mutation p.E8K 0.11 tolerated(0.53) possibly_damaging(0.651) TCGA-UY-A9PD-01 17 37682234 37682234 C G CDK12 Missense_Mutation p.S1142C 0.51 probably_damaging(0.962) TCGA-UY-A9PD-01 17 3840802 3840802 G A ATP2A3 Silent p.I743I 0.49 TCGA-UY-A9PD-01 17 39305971 39305971 G T KRTAP4-5 Missense_Mutation p.L17M 0.21 unknown(0) TCGA-UY-A9PD-01 17 40837368 40837368 C T CNTNAP1 Silent p.A215A 0.16 TCGA-UY-A9PD-01 17 47103857 47103857 T C IGF2BP1 Silent p.G105G 0.37 TCGA-UY-A9PD-01 17 48940242 48940242 C - TOB1 3'UTR 0.57 TCGA-UY-A9PD-01 17 65909041 65909041 G C BPTF Missense_Mutation p.E1681Q 0.49 probably_damaging(0.999) TCGA-UY-A9PD-01 17 74865014 74865014 G A MGAT5B 5'Flank 0.61 TCGA-UY-A9PD-01 17 7574018 7574018 G T TP53 Missense_Mutation p.R337S 0.22 deleterious(0.01) probably_damaging(0.914) TCGA-UY-A9PD-01 17 7577539 7577539 G C TP53 Missense_Mutation p.R248G 0.30 deleterious(0.03) probably_damaging(1) TCGA-UY-A9PD-01 17 80019839 80019839 G A DUS1L Silent p.R177R 0.11 TCGA-UY-A9PD-01 17 8108619 8108619 A G AURKB Missense_Mutation p.I259T 0.23 deleterious(0) possibly_damaging(0.876) TCGA-UY-A9PD-01 18 12325108 12325108 C G TUBB6 Missense_Mutation p.T107R 0.80 deleterious_low_confidence(0) probably_damaging(1) TCGA-UY-A9PD-01 18 28934576 28934576 C T DSG1 Missense_Mutation p.T806I 0.74 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PD-01 18 29111128 29111128 G A DSG2 Missense_Mutation p.S398N 0.16 tolerated(0.06) possibly_damaging(0.828) TCGA-UY-A9PD-01 18 30804884 30804884 A T CCDC178 Missense_Mutation p.I558N 0.71 deleterious(0) probably_damaging(0.91) TCGA-UY-A9PD-01 18 61627519 61627519 T C HMSD Missense_Mutation p.I117T 0.70 tolerated(0.4) benign(0.03) TCGA-UY-A9PD-01 19 10335472 10335472 G A S1PR2 Missense_Mutation p.S37L 0.20 tolerated(0.07) benign(0.002) TCGA-UY-A9PD-01 19 10742563 10742563 G C SLC44A2 Missense_Mutation p.E216Q 0.18 deleterious(0.02) benign(0.14) TCGA-UY-A9PD-01 19 10799940 10799940 C T ILF3 Silent p.G883G 0.16 TCGA-UY-A9PD-01 19 11534675 11534675 T C CCDC151 Silent p.L329L 0.32 TCGA-UY-A9PD-01 19 12156017 12156017 T C ZNF878 Missense_Mutation p.I67V 0.27 tolerated(0.46) benign(0) TCGA-UY-A9PD-01 19 12430547 12430547 G T ZNF563 Missense_Mutation p.P98T 0.49 tolerated(1) benign(0.013) TCGA-UY-A9PD-01 19 16918475 16918475 C T NWD1 Missense_Mutation p.T1272M 0.26 deleterious(0.03) probably_damaging(0.921) TCGA-UY-A9PD-01 19 1978725 1978725 G C CSNK1G2 Silent p.T141T 0.27 TCGA-UY-A9PD-01 19 22154789 22154789 A T ZNF208 Missense_Mutation p.L1016H 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-UY-A9PD-01 19 2430872 2430872 C T LMNB2 3'UTR 0.18 TCGA-UY-A9PD-01 19 2432499 2432499 C T LMNB2 Missense_Mutation p.R502K 0.24 tolerated(0.28) benign(0.03) TCGA-UY-A9PD-01 19 31768523 31768523 G T TSHZ3 Missense_Mutation p.Q726K 0.16 deleterious(0) probably_damaging(0.977) TCGA-UY-A9PD-01 19 36272087 36272087 G A ARHGAP33 Missense_Mutation p.E340K 0.42 deleterious_low_confidence(0) benign(0.434) TCGA-UY-A9PD-01 19 38897654 38897654 G T FAM98C Silent p.L285L 0.34 TCGA-UY-A9PD-01 19 39914439 39914439 A G PLEKHG2 Missense_Mutation p.E889G 0.33 deleterious_low_confidence(0) benign(0.424) TCGA-UY-A9PD-01 19 41003464 41003464 G C SPTBN4 Missense_Mutation p.R246P 0.15 deleterious(0) benign(0) TCGA-UY-A9PD-01 19 41286319 41286319 G A RAB4B Missense_Mutation p.V43M 0.12 deleterious(0.01) probably_damaging(0.942) TCGA-UY-A9PD-01 19 42737288 42737288 G C GSK3A Missense_Mutation p.Q358E 0.21 deleterious(0.03) benign(0.132) TCGA-UY-A9PD-01 19 43372459 43372459 G T PSG1 Nonsense_Mutation p.S346* 0.11 TCGA-UY-A9PD-01 19 43680241 43680241 C A PSG5 Missense_Mutation p.V164F 0.27 tolerated(0.08) probably_damaging(0.936) TCGA-UY-A9PD-01 19 44223744 44223744 G A IRGC Missense_Mutation p.R345Q 0.26 tolerated(0.17) possibly_damaging(0.878) TCGA-UY-A9PD-01 19 46375806 46375806 C T FOXA3 Silent p.S181S 0.38 TCGA-UY-A9PD-01 19 47423806 47423806 A G ARHGAP35 Missense_Mutation p.K625R 0.14 tolerated(0.39) benign(0.003) TCGA-UY-A9PD-01 19 53576548 53576548 A C ZNF160 Intron 0.34 TCGA-UY-A9PD-01 19 54304648 54304648 C T NLRP12 Silent p.L863L 0.17 TCGA-UY-A9PD-01 19 54969310 54969310 A C LENG8 Missense_Mutation p.Q644P 0.22 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PD-01 19 56539833 56539833 C T NLRP5 Missense_Mutation p.P745L 0.12 tolerated(0.54) benign(0.002) TCGA-UY-A9PD-01 19 58262271 58262271 C G AC003006.7 Missense_Mutation p.S51C 0.26 tolerated(0.09) probably_damaging(0.997) TCGA-UY-A9PD-01 19 58863584 58863584 G A A1BG Intron 0.25 TCGA-UY-A9PD-01 19 58863875 58863875 G A A1BG Silent p.I129I 0.19 TCGA-UY-A9PD-01 19 8467391 8467391 C G RAB11B Missense_Mutation p.I151M 0.42 tolerated_low_confidence(0.35) possibly_damaging(0.567) TCGA-UY-A9PD-01 19 8842070 8842070 G C OR2Z1 Missense_Mutation p.S227T 0.19 deleterious(0.02) benign(0.143) TCGA-UY-A9PD-01 1 100534121 100534122 - T HIAT1 Frame_Shift_Ins p.L269Ffs*43 0.32 TCGA-UY-A9PD-01 1 107867484 107867484 T C NTNG1 Missense_Mutation p.V276A 0.37 deleterious(0.04) probably_damaging(0.995) TCGA-UY-A9PD-01 1 110766114 110766114 G A KCNC4 Missense_Mutation p.E403K 0.13 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PD-01 1 115256437 115256437 C T NRAS Missense_Mutation p.D92N 0.25 tolerated(0.11) benign(0.39) TCGA-UY-A9PD-01 1 117142937 117142937 C G IGSF3 Missense_Mutation p.R572P 0.44 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 1 120295195 120295195 T C HMGCS2 Missense_Mutation p.Q466R 0.08 tolerated(0.11) benign(0.01) TCGA-UY-A9PD-01 1 12061891 12061891 G C MFN2 Missense_Mutation p.E346Q 0.21 deleterious(0) probably_damaging(0.99) TCGA-UY-A9PD-01 1 12062101 12062101 G A MFN2 Silent p.Q367Q 0.27 TCGA-UY-A9PD-01 1 12089841 12089841 C G MIIP Silent p.V245V 0.50 TCGA-UY-A9PD-01 1 12327056 12327056 C T VPS13D Silent p.V571V 0.42 TCGA-UY-A9PD-01 1 12952916 12952916 A G PRAMEF10 Missense_Mutation p.L419P 0.45 deleterious(0) probably_damaging(0.935) TCGA-UY-A9PD-01 1 152277728 152277728 C T FLG Missense_Mutation p.G3212R 0.16 unknown(0) TCGA-UY-A9PD-01 1 155851080 155851080 C T SYT11 Silent p.F359F 0.47 TCGA-UY-A9PD-01 1 156639079 156639079 C T NES 3'UTR 0.13 TCGA-UY-A9PD-01 1 159284303 159284303 A T OR10J3 Silent p.I49I 0.15 TCGA-UY-A9PD-01 1 16374530 16374530 C T CLCNKB Silent p.L163L 0.11 TCGA-UY-A9PD-01 1 171621641 171621641 G T MYOC Silent p.L37L 0.19 TCGA-UY-A9PD-01 1 181767843 181767843 T G CACNA1E Missense_Mutation p.L2272R 0.32 tolerated(0.08) probably_damaging(0.944) TCGA-UY-A9PD-01 1 186043953 186043953 C T HMCN1 Silent p.T2740T 0.53 TCGA-UY-A9PD-01 1 186332013 186332013 C T TPR Missense_Mutation p.E218K 0.51 benign(0.292) TCGA-UY-A9PD-01 1 18703308 18703308 G A IGSF21 Silent p.P372P 0.39 TCGA-UY-A9PD-01 1 192153583 192153583 G T RGS18 Nonsense_Mutation p.E203* 0.15 TCGA-UY-A9PD-01 1 192321281 192321281 A G RGS21 Missense_Mutation p.K65E 0.62 tolerated(0.16) benign(0.005) TCGA-UY-A9PD-01 1 197062232 197062233 - T ASPM Frame_Shift_Ins p.S3082Ifs*42 0.12 TCGA-UY-A9PD-01 1 200824006 200824006 G C CAMSAP2 Missense_Mutation p.K1295N 0.10 tolerated(0.08) possibly_damaging(0.735) TCGA-UY-A9PD-01 1 20140951 20140951 C T RNF186 Missense_Mutation p.C215Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-UY-A9PD-01 1 209605507 209605507 C T MIR205HG Intron 0.50 TCGA-UY-A9PD-01 1 22202768 22202768 G A HSPG2 Missense_Mutation p.S986F 0.25 benign(0.304) TCGA-UY-A9PD-01 1 228564910 228564910 G A OBSCN Missense_Mutation p.A8690T 0.69 probably_damaging(0.988) TCGA-UY-A9PD-01 1 238046086 238046086 G A ZP4 Missense_Mutation p.P484L 0.13 deleterious(0.02) possibly_damaging(0.635) TCGA-UY-A9PD-01 1 247614801 247614801 C A OR2B11 Missense_Mutation p.V162L 0.11 tolerated(0.69) benign(0.298) TCGA-UY-A9PD-01 1 247751686 247751686 G A OR2G2 Missense_Mutation p.E9K 0.14 tolerated(0.49) benign(0.005) TCGA-UY-A9PD-01 1 29618536 29618536 G A PTPRU Missense_Mutation p.R835Q 0.18 tolerated(0.09) benign(0.167) TCGA-UY-A9PD-01 1 32146624 32146624 T C COL16A1 Silent p.P861P 0.20 TCGA-UY-A9PD-01 1 32207506 32207506 C T BAI2 Missense_Mutation p.G494S 0.16 deleterious(0.02) probably_damaging(1) TCGA-UY-A9PD-01 1 39796902 39796902 G A MACF1 Intron 0.11 TCGA-UY-A9PD-01 1 39908201 39908201 G T MACF1 Missense_Mutation p.D4297Y 0.05 probably_damaging(1) TCGA-UY-A9PD-01 1 40928311 40928311 C G ZFP69B Missense_Mutation p.Q219E 0.37 tolerated(1) benign(0.075) TCGA-UY-A9PD-01 1 44456203 44456203 G T B4GALT2 3'Flank 0.18 TCGA-UY-A9PD-01 1 51005322 51005322 C A FAF1 Silent p.P449P 0.28 TCGA-UY-A9PD-01 1 52231649 52231649 A T OSBPL9 Missense_Mutation p.I322L 0.46 tolerated(0.33) benign(0.001) TCGA-UY-A9PD-01 1 65099830 65099830 C A CACHD1 Missense_Mutation p.S247Y 0.16 deleterious(0.04) benign(0.191) TCGA-UY-A9PD-01 1 75097491 75097491 C T C1orf173 Missense_Mutation p.G242E 0.15 deleterious(0) possibly_damaging(0.58) TCGA-UY-A9PD-01 1 85506800 85506800 C T MCOLN3 Missense_Mutation p.A97T 0.17 tolerated(0.33) benign(0.038) TCGA-UY-A9PD-01 1 87012773 87012773 A G CLCA4 5'UTR 0.32 TCGA-UY-A9PD-01 20 25259722 25259722 C A PYGB Silent p.P343P 0.21 TCGA-UY-A9PD-01 20 30584636 30584636 G A XKR7 Nonsense_Mutation p.W372* 0.15 TCGA-UY-A9PD-01 20 30585077 30585077 G A XKR7 Silent p.E519E 0.20 TCGA-UY-A9PD-01 20 33370088 33370088 G A NCOA6 Missense_Mutation p.S24L 0.21 benign(0.026) TCGA-UY-A9PD-01 20 37652383 37652383 G A DHX35 Missense_Mutation p.M548I 0.17 deleterious(0.01) possibly_damaging(0.542) TCGA-UY-A9PD-01 20 40161750 40161750 C T CHD6 Missense_Mutation p.E165K 0.20 tolerated(0.11) benign(0.005) TCGA-UY-A9PD-01 20 49620849 49620849 C T KCNG1 Silent p.T423T 0.35 TCGA-UY-A9PD-01 20 50713925 50713925 G A ZFP64 Silent p.L124L 0.19 TCGA-UY-A9PD-01 21 22910240 22910240 G A NCAM2 Missense_Mutation p.D826N 0.36 tolerated(0.25) probably_damaging(0.998) TCGA-UY-A9PD-01 21 30330766 30330766 G A LTN1 Missense_Mutation p.H943Y 0.13 tolerated(0.25) benign(0.169) TCGA-UY-A9PD-01 21 31869408 31869408 A G KRTAP19-4 Silent p.Y7Y 0.16 TCGA-UY-A9PD-01 21 33318393 33318393 C T HUNK Missense_Mutation p.P219L 0.18 tolerated(0.74) probably_damaging(0.998) TCGA-UY-A9PD-01 21 34003787 34003787 C T SYNJ1 Missense_Mutation p.G1453R 0.16 tolerated_low_confidence(0.08) benign(0.307) TCGA-UY-A9PD-01 21 43783377 43783377 G A TFF1 Silent p.D75D 0.24 TCGA-UY-A9PD-01 21 43867218 43867218 T C UBASH3A Missense_Mutation p.W634R 0.40 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 22 19398286 19398286 G A HIRA Missense_Mutation p.S18L 0.19 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 22 23438225 23438225 G A GNAZ Missense_Mutation p.E115K 0.20 deleterious(0.05) benign(0.03) TCGA-UY-A9PD-01 22 38692526 38692526 C A CSNK1E Intron 0.14 TCGA-UY-A9PD-01 22 41574995 41574995 A G EP300 3'UTR 0.55 TCGA-UY-A9PD-01 22 43460230 43460230 G A TTLL1 Silent p.L202L 0.19 TCGA-UY-A9PD-01 22 50437746 50437746 C T IL17REL Missense_Mutation p.R192Q 0.35 deleterious(0) probably_damaging(0.944) TCGA-UY-A9PD-01 22 51007693 51007693 C T CPT1B 3'UTR 0.26 TCGA-UY-A9PD-01 2 10929920 10929920 G C PDIA6 Silent p.A265A 0.29 TCGA-UY-A9PD-01 2 110881373 110881373 C A NPHP1 Missense_Mutation p.V733L 0.18 tolerated_low_confidence(0.09) benign(0.109) TCGA-UY-A9PD-01 2 112566567 112566567 C - ANAPC1 Frame_Shift_Del p.T1264Qfs*14 0.10 TCGA-UY-A9PD-01 2 128471493 128471493 C A WDR33 Missense_Mutation p.R991L 0.24 tolerated_low_confidence(0.19) benign(0.069) TCGA-UY-A9PD-01 2 136396465 136396465 G A R3HDM1 Splice_Site p.X331_splice 0.18 TCGA-UY-A9PD-01 2 136432917 136432917 C G R3HDM1 Missense_Mutation p.P688R 0.17 deleterious(0) possibly_damaging(0.628) TCGA-UY-A9PD-01 2 141986853 141986853 A G LRP1B Missense_Mutation p.I250T 0.36 benign(0.152) TCGA-UY-A9PD-01 2 15676635 15676635 C T NBAS Missense_Mutation p.G185E 0.26 deleterious(0) probably_damaging(0.989) TCGA-UY-A9PD-01 2 15742725 15742725 G T DDX1 Missense_Mutation p.G121W 0.24 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 2 15761231 15761231 A G DDX1 Missense_Mutation p.N480D 0.28 tolerated(0.47) benign(0.003) TCGA-UY-A9PD-01 2 166892725 166892725 T C SCN1A Missense_Mutation p.T1088A 0.21 tolerated(0.73) possibly_damaging(0.602) TCGA-UY-A9PD-01 2 166915146 166915146 G T SCN1A Missense_Mutation p.S106Y 0.19 deleterious(0.05) possibly_damaging(0.526) TCGA-UY-A9PD-01 2 17697333 17697333 C G RAD51AP2 Missense_Mutation p.E784Q 0.36 deleterious(0.04) benign(0.106) TCGA-UY-A9PD-01 2 179432814 179432814 G A TTN Silent p.V26015V 0.59 TCGA-UY-A9PD-01 2 183821286 183821286 C A NCKAP1 Missense_Mutation p.C692F 0.23 deleterious(0) possibly_damaging(0.81) TCGA-UY-A9PD-01 2 198281538 198281538 C T SF3B1 Missense_Mutation p.R198Q 0.20 tolerated(0.31) benign(0.316) TCGA-UY-A9PD-01 2 209271823 209271823 T A PTH2R Missense_Mutation p.C19S 0.23 deleterious(0.04) benign(0.01) TCGA-UY-A9PD-01 2 209358261 209358261 C T PTH2R Silent p.H510H 0.52 TCGA-UY-A9PD-01 2 220413805 220413805 G A TMEM198 Intron 0.47 TCGA-UY-A9PD-01 2 227871971 227871971 A G COL4A4 3'UTR 0.03 TCGA-UY-A9PD-01 2 238949991 238949991 G A UBE2F 3'UTR 0.16 TCGA-UY-A9PD-01 2 29072953 29072953 A G TRMT61B 3'UTR 0.38 TCGA-UY-A9PD-01 2 43919779 43919780 TT - PLEKHH2 Frame_Shift_Del p.L105Gfs*5 0.14 TCGA-UY-A9PD-01 2 49189932 49189932 G A FSHR Silent p.P676P 0.20 TCGA-UY-A9PD-01 2 73718243 73718243 C T ALMS1 Missense_Mutation p.P3052S 0.08 probably_damaging(1) TCGA-UY-A9PD-01 2 84780158 84780158 G A DNAH6 Silent p.L534L 0.13 TCGA-UY-A9PD-01 2 84800597 84800597 A T DNAH6 Missense_Mutation p.I604F 0.24 tolerated(0.12) benign(0.027) TCGA-UY-A9PD-01 2 88751474 88751474 C A FOXI3 RNA 0.42 TCGA-UY-A9PD-01 2 97757305 97757305 C T FAHD2B Missense_Mutation p.G47R 0.36 tolerated(0.37) benign(0.002) TCGA-UY-A9PD-01 2 98422096 98422096 C G TMEM131 Missense_Mutation p.R709P 0.42 tolerated(0.06) probably_damaging(0.985) TCGA-UY-A9PD-01 3 100275608 100275608 G A TMEM45A Missense_Mutation p.M65I 0.09 tolerated(0.97) benign(0.002) TCGA-UY-A9PD-01 3 108672648 108672648 C T GUCA1C 5'UTR 0.22 TCGA-UY-A9PD-01 3 108751639 108751639 G C MORC1 Missense_Mutation p.S498C 0.49 deleterious(0) probably_damaging(0.983) TCGA-UY-A9PD-01 3 11058952 11058952 G A SLC6A1 Missense_Mutation p.E19K 0.52 tolerated(0.48) benign(0.043) TCGA-UY-A9PD-01 3 112546281 112546281 C A CD200R1L Silent p.G121G 0.13 TCGA-UY-A9PD-01 3 113955562 113955562 G C ZNF80 Silent p.L120L 0.10 TCGA-UY-A9PD-01 3 120461311 120461311 G C RABL3 Nonsense_Mutation p.S15* 0.14 TCGA-UY-A9PD-01 3 124209607 124209607 C T KALRN Missense_Mutation p.P1486L 0.45 deleterious(0.02) possibly_damaging(0.885) TCGA-UY-A9PD-01 3 124449279 124449279 G C UMPS 5'UTR 0.16 TCGA-UY-A9PD-01 3 12869076 12869076 C T CAND2 Silent p.D1116D 0.23 TCGA-UY-A9PD-01 3 134080428 134080428 C T AMOTL2 Missense_Mutation p.E501K 0.39 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 3 164906999 164906999 G A SLITRK3 Silent p.L540L 0.40 TCGA-UY-A9PD-01 3 183584433 183584433 C T PARL Missense_Mutation p.E148K 0.25 tolerated(0.7) benign(0) TCGA-UY-A9PD-01 3 183670895 183670895 G T ABCC5 Nonsense_Mutation p.Y882* 0.16 TCGA-UY-A9PD-01 3 188925178 188925178 C G TPRG1 Nonsense_Mutation p.S2* 0.35 TCGA-UY-A9PD-01 3 32030663 32030663 T G ZNF860 Missense_Mutation p.I31R 0.14 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 3 33906752 33906752 C T PDCD6IP Silent p.P759P 0.35 TCGA-UY-A9PD-01 3 37369177 37369177 G - GOLGA4 Frame_Shift_Del p.A1957Qfs*22 0.30 TCGA-UY-A9PD-01 3 38058144 38058144 C A PLCD1 Missense_Mutation p.R110L 0.47 tolerated(0.06) benign(0.004) TCGA-UY-A9PD-01 3 47281302 47281302 G C KIF9 Intron 0.24 TCGA-UY-A9PD-01 3 47385368 47385368 G T KLHL18 Missense_Mutation p.M554I 0.16 tolerated(0.39) benign(0.022) TCGA-UY-A9PD-01 3 48626289 48626304 TCAGGGAGCCATACCT - COL7A1 Splice_Site p.X813_splice 0.26 TCGA-UY-A9PD-01 3 49059908 49059908 G A NDUFAF3 Missense_Mutation p.M69I 0.51 tolerated(0.42) benign(0.007) TCGA-UY-A9PD-01 3 52556410 52556410 C T STAB1 Missense_Mutation p.S2177L 0.08 tolerated(0.56) benign(0.001) TCGA-UY-A9PD-01 3 52621524 52621524 C T PBRM1 Intron 0.16 TCGA-UY-A9PD-01 3 59737967 59737967 C A FHIT Silent p.R143R 0.08 TCGA-UY-A9PD-01 3 62518601 62518601 G A CADPS Missense_Mutation p.P746S 0.32 deleterious(0.02) possibly_damaging(0.641) TCGA-UY-A9PD-01 3 78667181 78667181 C T ROBO1 Missense_Mutation p.V1296M 0.21 deleterious(0.03) benign(0.44) TCGA-UY-A9PD-01 4 100451106 100451106 G A C4orf17 Silent p.Q179Q 0.16 TCGA-UY-A9PD-01 4 100540147 100540147 C G MTTP Missense_Mutation p.S745C 0.12 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 4 109810882 109810882 G A COL25A1 Missense_Mutation p.P305L 0.20 deleterious(0.01) probably_damaging(0.919) TCGA-UY-A9PD-01 4 110866295 110866295 A T EGF Silent p.T268T 0.19 TCGA-UY-A9PD-01 4 114232532 114232532 C T ANK2 Silent p.S890S 0.32 TCGA-UY-A9PD-01 4 126412834 126412834 C T FAT4 Missense_Mutation p.L4953F 0.09 probably_damaging(0.997) TCGA-UY-A9PD-01 4 152056242 152056242 A T SH3D19 Missense_Mutation p.S567T 0.43 tolerated(0.06) benign(0.033) TCGA-UY-A9PD-01 4 156784757 156784757 G A ASIC5 Missense_Mutation p.L64F 0.16 tolerated(0.17) benign(0.02) TCGA-UY-A9PD-01 4 53525352 53525352 C T USP46 5'UTR 0.29 TCGA-UY-A9PD-01 4 56496571 56496571 C G NMU Missense_Mutation p.E57Q 0.19 tolerated(0.29) benign(0.007) TCGA-UY-A9PD-01 4 68964608 68964610 CAA - TMPRSS11F In_Frame_Del p.V53del 0.15 TCGA-UY-A9PD-01 4 79494389 79494389 C G ANXA3 Missense_Mutation p.A24G 0.20 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PD-01 4 88903845 88903845 C T SPP1 Missense_Mutation p.R248W 0.18 deleterious(0.03) probably_damaging(0.978) TCGA-UY-A9PD-01 4 949204 949204 G A TMEM175 Silent p.L213L 0.37 TCGA-UY-A9PD-01 5 109051903 109051903 C G MAN2A1 Missense_Mutation p.S158C 0.27 deleterious(0.02) benign(0.235) TCGA-UY-A9PD-01 5 129030532 129030532 C T ADAMTS19 Nonsense_Mutation p.Q974* 0.20 TCGA-UY-A9PD-01 5 137089271 137089271 G C HNRNPA0 Missense_Mutation p.P162R 0.45 deleterious(0.02) possibly_damaging(0.873) TCGA-UY-A9PD-01 5 140033626 140033626 C G IK Missense_Mutation p.L170V 0.31 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 5 140590224 140590224 C T PCDHB12 Missense_Mutation p.P582L 0.19 deleterious_low_confidence(0) benign(0.087) TCGA-UY-A9PD-01 5 140590225 140590225 G T PCDHB12 Silent p.P582P 0.19 TCGA-UY-A9PD-01 5 14678824 14678824 C T FAM105B Silent p.I88I 0.44 TCGA-UY-A9PD-01 5 174868646 174868646 G C DRD1 3'UTR 0.38 TCGA-UY-A9PD-01 5 179321413 179321413 A G TBC1D9B Missense_Mutation p.F184L 0.21 deleterious(0) probably_damaging(0.974) TCGA-UY-A9PD-01 5 19838908 19838908 A G CDH18 Missense_Mutation p.L63S 0.72 deleterious(0.02) possibly_damaging(0.787) TCGA-UY-A9PD-01 5 39393418 39393418 T C DAB2 Missense_Mutation p.I57V 0.37 tolerated(0.19) benign(0.057) TCGA-UY-A9PD-01 5 76348604 76348604 C T AGGF1 Missense_Mutation p.T480I 0.13 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PD-01 5 90106458 90106458 T C GPR98 Silent p.N5127N 0.58 TCGA-UY-A9PD-01 6 107390086 107390086 T C BEND3 Missense_Mutation p.K770R 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-UY-A9PD-01 6 126319271 126319271 G A TRMT11 Silent p.V95V 0.52 TCGA-UY-A9PD-01 6 153075325 153075325 G A VIP Silent p.E44E 0.24 TCGA-UY-A9PD-01 6 167571224 167571224 G A GPR31 Silent p.N32N 0.30 TCGA-UY-A9PD-01 6 167786671 167786671 C T TCP10 Missense_Mutation p.D323N 0.47 tolerated_low_confidence(0.3) benign(0) TCGA-UY-A9PD-01 6 27776021 27776021 C T HIST1H2AI Missense_Mutation p.R12C 0.11 deleterious_low_confidence(0.03) unknown(0) TCGA-UY-A9PD-01 6 31913139 31913139 G T C2 3'UTR 0.20 TCGA-UY-A9PD-01 6 32122955 32122955 C T PPT2 Missense_Mutation p.S117L 0.42 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PD-01 6 33164069 33164069 G C RXRB Intron 0.29 TCGA-UY-A9PD-01 6 33170340 33170340 G A SLC39A7 Missense_Mutation p.R268H 0.14 tolerated(0.19) benign(0.001) TCGA-UY-A9PD-01 6 35928812 35928812 G A SLC26A8 Missense_Mutation p.S509L 0.25 deleterious(0) possibly_damaging(0.703) TCGA-UY-A9PD-01 6 42832462 42832462 G T GLTSCR1L Missense_Mutation p.G840C 0.41 tolerated_low_confidence(0.21) benign(0.009) TCGA-UY-A9PD-01 6 47846820 47846820 T C PTCHD4 Missense_Mutation p.H587R 0.20 tolerated(0.49) probably_damaging(0.969) TCGA-UY-A9PD-01 6 55216287 55216287 G T GFRAL Nonsense_Mutation p.E203* 0.59 TCGA-UY-A9PD-01 6 55923968 55923968 G T COL21A1 Missense_Mutation p.P894H 0.09 tolerated(0.11) probably_damaging(0.971) TCGA-UY-A9PD-01 6 64422761 64422761 A C PHF3 Silent p.A1759A 0.51 TCGA-UY-A9PD-01 6 71010034 71010034 C T COL9A1 Silent p.R48R 0.19 TCGA-UY-A9PD-01 6 74468731 74468731 A G CD109 Silent p.L246L 0.31 TCGA-UY-A9PD-01 6 87966709 87966709 C T ZNF292 Missense_Mutation p.T1121I 0.52 deleterious(0.01) possibly_damaging(0.821) TCGA-UY-A9PD-01 7 100487810 100487810 G T ACHE 3'UTR 0.24 TCGA-UY-A9PD-01 7 100818075 100818075 G T NAT16 Missense_Mutation p.A5D 0.23 deleterious(0) possibly_damaging(0.646) TCGA-UY-A9PD-01 7 103230167 103230167 C A RELN Missense_Mutation p.A1341S 0.15 tolerated(0.24) possibly_damaging(0.729) TCGA-UY-A9PD-01 7 104377187 104377187 A T LHFPL3 Missense_Mutation p.M171L 0.29 tolerated(0.47) benign(0.027) TCGA-UY-A9PD-01 7 104704022 104704022 A G KMT2E Silent p.K137K 0.20 TCGA-UY-A9PD-01 7 105902147 105902147 C G NAMPT Missense_Mutation p.E326Q 0.41 tolerated(0.2) benign(0.016) TCGA-UY-A9PD-01 7 117180398 117180398 C T CFTR Nonsense_Mutation p.Q372* 0.16 TCGA-UY-A9PD-01 7 119914546 119914546 T C KCND2 5'UTR 0.16 TCGA-UY-A9PD-01 7 121942123 121942123 C T FEZF1 Silent p.T452T 0.22 TCGA-UY-A9PD-01 7 124511029 124511029 C G POT1 Missense_Mutation p.G64A 0.20 tolerated(0.31) benign(0.061) TCGA-UY-A9PD-01 7 128120741 128120741 A G METTL2B Missense_Mutation p.Q200R 0.28 deleterious(0.03) benign(0.378) TCGA-UY-A9PD-01 7 131149094 131149094 C A MKLN1 Missense_Mutation p.P572Q 0.11 tolerated(0.3) benign(0.032) TCGA-UY-A9PD-01 7 138312124 138312124 G A SVOPL Silent p.F384F 0.09 TCGA-UY-A9PD-01 7 139164435 139164435 C T KLRG2 Missense_Mutation p.E315K 0.15 deleterious(0.04) possibly_damaging(0.784) TCGA-UY-A9PD-01 7 140255495 140255495 G T DENND2A Missense_Mutation p.R660S 0.41 deleterious(0.02) probably_damaging(0.985) TCGA-UY-A9PD-01 7 142131869 142131869 G T TRBV5-6 Silent p.P3P 0.15 TCGA-UY-A9PD-01 7 142131870 142131870 G T TRBV5-6 Missense_Mutation p.P3H 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-UY-A9PD-01 7 143701566 143701566 G T OR6B1 Missense_Mutation p.K159N 0.32 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 7 151716922 151716922 A G GALNTL5 3'UTR 0.09 TCGA-UY-A9PD-01 7 18687582 18687582 T C HDAC9 Silent p.L404L 0.24 TCGA-UY-A9PD-01 7 23300376 23300376 A T GPNMB Missense_Mutation p.K334N 0.19 tolerated(0.44) benign(0.003) TCGA-UY-A9PD-01 7 5340281 5340281 C T SLC29A4 Missense_Mutation p.R480W 0.21 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 7 6639680 6639680 C T C7orf26 Silent p.V267V 0.44 TCGA-UY-A9PD-01 7 74564126 74564126 G A GTF2IRD2B Missense_Mutation p.V625M 0.42 tolerated(0.07) benign(0.055) TCGA-UY-A9PD-01 7 77379116 77379116 C A RSBN1L Nonsense_Mutation p.S360* 0.39 TCGA-UY-A9PD-01 7 8260993 8260993 G A ICA1 Missense_Mutation p.L98F 0.36 deleterious(0) probably_damaging(1) TCGA-UY-A9PD-01 7 8791206 8791206 C A NXPH1 Missense_Mutation p.T208K 0.37 tolerated(0.74) possibly_damaging(0.593) TCGA-UY-A9PD-01 8 100205199 100205199 C T VPS13B Missense_Mutation p.A810V 0.17 tolerated(0.22) probably_damaging(0.932) TCGA-UY-A9PD-01 8 10465496 10465496 C A RP1L1 Nonsense_Mutation p.E2038* 0.33 TCGA-UY-A9PD-01 8 124525536 124525536 C T FBXO32 Missense_Mutation p.G185S 0.39 deleterious(0.04) probably_damaging(1) TCGA-UY-A9PD-01 8 139165072 139165072 G - FAM135B Frame_Shift_Del p.P549Qfs*3 0.27 TCGA-UY-A9PD-01 8 143823817 143823817 G A SLURP1 5'UTR 0.19 TCGA-UY-A9PD-01 8 144732159 144732159 G A ZNF623 Silent p.T39T 0.17 TCGA-UY-A9PD-01 8 144945880 144945880 G A EPPK1 Silent p.L514L 0.29 TCGA-UY-A9PD-01 8 145663880 145663880 G T TONSL Missense_Mutation p.R543S 0.21 deleterious(0.04) benign(0.209) TCGA-UY-A9PD-01 8 27394368 27394368 A G EPHX2 Missense_Mutation p.D413G 0.12 tolerated(0.17) benign(0.004) TCGA-UY-A9PD-01 8 27845064 27845064 G C SCARA5 Silent p.S23S 0.30 TCGA-UY-A9PD-01 8 32599532 32599532 A T NRG1 Intron 0.22 TCGA-UY-A9PD-01 8 35544090 35544090 A T UNC5D Missense_Mutation p.E316V 0.33 deleterious(0.03) benign(0.102) TCGA-UY-A9PD-01 8 37611605 37611605 C T ERLIN2 Missense_Mutation p.P331L 0.26 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-UY-A9PD-01 8 41476311 41476311 C T AGPAT6 Silent p.L388L 0.67 TCGA-UY-A9PD-01 8 41790872 41790872 G C KAT6A Missense_Mutation p.S1622R 0.68 unknown(0) TCGA-UY-A9PD-01 8 59764314 59764314 C T TOX Silent p.Q154Q 0.60 TCGA-UY-A9PD-01 8 68982089 68982089 G A PREX2 Missense_Mutation p.R488H 0.46 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PD-01 8 74526059 74526059 C G STAU2 Missense_Mutation p.E271Q 0.23 tolerated(0.13) benign(0.422) TCGA-UY-A9PD-01 9 130551655 130551655 G A CDK9 Missense_Mutation p.D318N 0.72 tolerated(0.11) benign(0.014) TCGA-UY-A9PD-01 9 132980228 132980228 C T NCS1 Silent p.F69F 0.20 TCGA-UY-A9PD-01 9 27524516 27524516 G T IFNK Missense_Mutation p.R61L 0.23 deleterious(0.02) possibly_damaging(0.676) TCGA-UY-A9PD-01 X 100385038 100385038 C T CENPI Silent p.I421I 0.37 TCGA-UY-A9PD-01 X 110494434 110494434 C T CAPN6 Intron 0.81 TCGA-UY-A9PD-01 X 111090620 111090620 C T TRPC5 Silent p.P474P 0.54 TCGA-UY-A9PD-01 X 117900904 117900904 A T IL13RA1 Missense_Mutation p.K325I 0.67 tolerated(0.07) benign(0.001) TCGA-UY-A9PD-01 X 120009127 120009127 C T CT47B1 Missense_Mutation p.R133H 0.36 tolerated(1) benign(0.003) TCGA-UY-A9PD-01 X 130415842 130415842 G T IGSF1 Nonsense_Mutation p.C441* 0.71 TCGA-UY-A9PD-01 X 150345219 150345219 C - GPR50 Frame_Shift_Del p.Y11Mfs*17 0.23 TCGA-UY-A9PD-01 X 151870095 151870095 C G MAGEA6 Missense_Mutation p.P262R 0.39 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PD-01 X 3242345 3242345 G C MXRA5 Missense_Mutation p.Q461E 0.80 tolerated(0.31) benign(0.272) TCGA-UY-A9PD-01 X 44949154 44949154 T C KDM6A Missense_Mutation p.W1239R 0.87 deleterious(0) probably_damaging(0.987) TCGA-UY-A9PD-01 X 70627986 70627986 A G TAF1 Missense_Mutation p.S1477G 0.81 deleterious(0.01) probably_damaging(0.998) TCGA-UY-A9PD-01 X 84534413 84534414 - A POF1B 3'UTR 0.47 TCGA-UY-A9PE-01 10 101590497 101590497 G C ABCC2 Silent p.L924L 0.46 TCGA-UY-A9PE-01 10 105779643 105779643 C T SLK Missense_Mutation p.T1095I 0.18 tolerated(0.2) benign(0.292) TCGA-UY-A9PE-01 10 114203355 114203355 G A ZDHHC6 Nonsense_Mutation p.Q93* 0.11 TCGA-UY-A9PE-01 10 116620626 116620626 C G FAM160B1 Missense_Mutation p.S689C 0.46 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PE-01 10 123718842 123718842 C T NSMCE4A 3'UTR 0.10 TCGA-UY-A9PE-01 10 30748220 30748220 G A MAP3K8 Missense_Mutation p.D355N 0.43 deleterious(0.04) benign(0.082) TCGA-UY-A9PE-01 10 38407436 38407436 G A ZNF37A Missense_Mutation p.G453S 0.38 tolerated(0.76) probably_damaging(0.999) TCGA-UY-A9PE-01 10 51465358 51465358 G A AGAP7 Silent p.L366L 0.17 TCGA-UY-A9PE-01 10 70048287 70048287 G A PBLD Missense_Mutation p.S215L 0.25 deleterious(0) probably_damaging(0.969) TCGA-UY-A9PE-01 10 70196880 70196880 G C DNA2 Missense_Mutation p.L598V 0.20 tolerated(0.06) possibly_damaging(0.747) TCGA-UY-A9PE-01 10 70404494 70404494 G C TET1 Missense_Mutation p.E670Q 0.40 deleterious(0.01) probably_damaging(0.934) TCGA-UY-A9PE-01 10 89624275 89624275 C T PTEN Nonsense_Mutation p.Q17* 0.42 TCGA-UY-A9PE-01 10 95070330 95070330 C A MYOF Missense_Mutation p.R1987L 0.30 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 11 113857500 113857500 C A HTR3A Silent p.P328P 0.13 TCGA-UY-A9PE-01 11 117299107 117299107 C G DSCAML1 Silent p.S2093S 0.41 TCGA-UY-A9PE-01 11 118972447 118972447 G A DPAGT1 5'UTR 0.33 TCGA-UY-A9PE-01 11 122680564 122680564 C G UBASH3B Missense_Mutation p.F640L 0.19 deleterious(0) probably_damaging(0.987) TCGA-UY-A9PE-01 11 18057507 18057507 A G TPH1 Silent p.D100D 0.06 TCGA-UY-A9PE-01 11 57564385 57564385 G A CTNND1 Missense_Mutation p.D293N 0.19 deleterious(0.02) possibly_damaging(0.504) TCGA-UY-A9PE-01 11 59480421 59480421 C G OR10V1 Missense_Mutation p.D300H 0.13 tolerated(0.05) benign(0.043) TCGA-UY-A9PE-01 11 601682 601682 G C PHRF1 Missense_Mutation p.R378T 0.69 tolerated(0.13) benign(0.084) TCGA-UY-A9PE-01 11 61551791 61551791 G C MYRF Missense_Mutation p.R1078S 0.13 tolerated(0.86) benign(0.016) TCGA-UY-A9PE-01 11 6417041 6417041 G A APBB1 Missense_Mutation p.S645L 0.45 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 11 66109074 66109074 C T BRMS1 Missense_Mutation p.E54K 0.17 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PE-01 11 77727896 77727896 A C KCTD14 Missense_Mutation p.C171G 0.36 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 11 82877161 82877161 C T PCF11 Missense_Mutation p.L408F 0.17 tolerated(0.05) probably_damaging(0.972) TCGA-UY-A9PE-01 11 92901203 92901203 G A SLC36A4 Silent p.F225F 0.35 TCGA-UY-A9PE-01 12 107914403 107914403 C T BTBD11 Silent p.I425I 0.30 TCGA-UY-A9PE-01 12 108011206 108011206 G C BTBD11 Missense_Mutation p.G742R 0.13 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 12 111893835 111893835 G A ATXN2 Nonsense_Mutation p.Q1248* 0.16 TCGA-UY-A9PE-01 12 111894031 111894031 G T ATXN2 Silent p.L1182L 0.16 TCGA-UY-A9PE-01 12 117287276 117287276 G C RNFT2 3'UTR 0.27 TCGA-UY-A9PE-01 12 121458862 121458862 C G OASL Splice_Site p.X350_splice 0.09 TCGA-UY-A9PE-01 12 121735393 121735393 G T CAMKK2 5'UTR 0.44 TCGA-UY-A9PE-01 12 124236944 124236944 G T ATP6V0A2 Nonsense_Mutation p.E724* 0.19 TCGA-UY-A9PE-01 12 124352131 124352131 C T DNAH10 Nonsense_Mutation p.Q2311* 0.34 TCGA-UY-A9PE-01 12 124352142 124352142 C T DNAH10 Silent p.L2314L 0.36 TCGA-UY-A9PE-01 12 124798909 124798909 C G FAM101A Silent p.R82R 0.16 TCGA-UY-A9PE-01 12 129467630 129467630 G A GLT1D1 Missense_Mutation p.D266N 0.23 deleterious_low_confidence(0.01) benign(0.015) TCGA-UY-A9PE-01 12 18237514 18237514 G A RERGL Missense_Mutation p.S91L 0.17 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 12 45568328 45568328 C T PLEKHA8P1 RNA 0.34 TCGA-UY-A9PE-01 12 48499382 48499382 G A PFKM 5'Flank 0.38 TCGA-UY-A9PE-01 12 49447877 49447877 G C KMT2D Nonsense_Mutation p.S186* 0.25 TCGA-UY-A9PE-01 12 51138653 51138653 C G DIP2B 3'UTR 0.19 TCGA-UY-A9PE-01 12 53072404 53072404 T C KRT1 Missense_Mutation p.D243G 0.21 deleterious(0) possibly_damaging(0.902) TCGA-UY-A9PE-01 12 6554545 6554545 G A CD27 Intron 0.15 TCGA-UY-A9PE-01 12 6692125 6692125 G A CHD4 Intron 0.18 TCGA-UY-A9PE-01 12 71148225 71148225 C G PTPRR Intron 0.12 TCGA-UY-A9PE-01 12 88379792 88379792 G A C12orf50 Missense_Mutation p.H321Y 0.27 deleterious(0.02) benign(0.009) TCGA-UY-A9PE-01 12 96361533 96361533 G A AMDHD1 Splice_Site p.X398_splice 0.12 TCGA-UY-A9PE-01 13 110850861 110850861 G A COL4A1 Missense_Mutation p.P413L 0.25 unknown(0) TCGA-UY-A9PE-01 13 67801928 67801928 T A PCDH9 Missense_Mutation p.K215N 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-UY-A9PE-01 13 67801950 67801950 T G PCDH9 Missense_Mutation p.Q208P 0.36 deleterious(0.05) probably_damaging(0.968) TCGA-UY-A9PE-01 13 88329928 88329928 A C SLITRK5 Missense_Mutation p.N762T 0.09 tolerated(0.11) benign(0.348) TCGA-UY-A9PE-01 14 20249030 20249030 G T OR4M1 Missense_Mutation p.Q183H 0.09 tolerated(0.06) benign(0.443) TCGA-UY-A9PE-01 14 20249031 20249031 G T OR4M1 Missense_Mutation p.V184F 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-UY-A9PE-01 14 24114600 24114600 G C DHRS2 3'UTR 0.17 TCGA-UY-A9PE-01 14 24769920 24769920 G A NOP9 Missense_Mutation p.G185E 0.21 tolerated(0.46) benign(0.028) TCGA-UY-A9PE-01 14 31762511 31762511 T - RP11-596D21.1 Intron 0.10 TCGA-UY-A9PE-01 15 101562620 101562620 C G LRRK1 Missense_Mutation p.Q629E 0.32 tolerated(0.05) benign(0.034) TCGA-UY-A9PE-01 15 20710671 20710671 G T HERC2P3 RNA 0.17 TCGA-UY-A9PE-01 15 25458852 25458852 G A SNORD115-24 RNA 0.16 TCGA-UY-A9PE-01 15 35182480 35182480 C T AQR Missense_Mutation p.E873K 0.38 deleterious(0.02) possibly_damaging(0.626) TCGA-UY-A9PE-01 15 41275164 41275164 C T INO80 Missense_Mutation p.R1450Q 0.15 tolerated(0.11) probably_damaging(0.968) TCGA-UY-A9PE-01 15 41522829 41522829 C A EXD1 5'UTR 0.16 TCGA-UY-A9PE-01 15 42041699 42041699 C - MGA Frame_Shift_Del p.L1966Ffs*3 0.28 TCGA-UY-A9PE-01 15 43724658 43724658 G A TP53BP1 Missense_Mutation p.R1137W 0.24 tolerated(0.11) benign(0.003) TCGA-UY-A9PE-01 15 43819227 43819227 C T MAP1A Silent p.L1852L 0.14 TCGA-UY-A9PE-01 15 49030882 49030882 C G CEP152 Missense_Mutation p.G1566A 0.20 deleterious(0.04) possibly_damaging(0.526) TCGA-UY-A9PE-01 15 63880539 63880539 G A USP3 Missense_Mutation p.D378N 0.15 tolerated(0.07) probably_damaging(0.99) TCGA-UY-A9PE-01 15 70994234 70994234 A C UACA Intron 0.30 TCGA-UY-A9PE-01 15 75094382 75094382 C G CSK Silent p.L376L 0.17 TCGA-UY-A9PE-01 15 78453948 78453948 C T IDH3A Silent p.A105A 0.12 TCGA-UY-A9PE-01 15 83933147 83933147 C T BNC1 Missense_Mutation p.D286N 0.26 tolerated(0.12) benign(0.002) TCGA-UY-A9PE-01 15 89395110 89395110 A G ACAN Silent p.Q704Q 0.22 TCGA-UY-A9PE-01 16 1820963 1820963 G A NME3 Missense_Mutation p.S104L 0.14 deleterious(0) possibly_damaging(0.461) TCGA-UY-A9PE-01 16 20370606 20370606 G A PDILT 3'UTR 0.18 TCGA-UY-A9PE-01 16 2512512 2512512 G A C16orf59 Missense_Mutation p.E283K 0.27 tolerated(0.16) possibly_damaging(0.572) TCGA-UY-A9PE-01 16 27509995 27509995 G A GTF3C1 Silent p.I707I 0.17 TCGA-UY-A9PE-01 16 3014407 3014407 G A KREMEN2 5'UTR 0.38 TCGA-UY-A9PE-01 16 31089289 31089289 G T ZNF646 Silent p.P548P 0.13 TCGA-UY-A9PE-01 16 5134739 5134739 A T FAM86A 3'UTR 0.18 TCGA-UY-A9PE-01 16 66420933 66420933 G A CDH5 Silent p.V144V 0.55 TCGA-UY-A9PE-01 16 684484 684484 G C C16orf13 3'UTR 0.40 TCGA-UY-A9PE-01 16 77775490 77775490 G C NUDT7 Missense_Mutation p.L120F 0.15 deleterious(0.02) benign(0.151) TCGA-UY-A9PE-01 17 26919574 26919574 C G SPAG5 Missense_Mutation p.E230Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.818) TCGA-UY-A9PE-01 17 41003397 41003397 G T AOC3 Missense_Mutation p.A13S 0.17 tolerated(0.4) possibly_damaging(0.739) TCGA-UY-A9PE-01 17 42636721 42636721 C T FZD2 Silent p.L555L 0.71 TCGA-UY-A9PE-01 17 49374340 49374340 C G UTP18 Nonsense_Mutation p.S554* 0.09 TCGA-UY-A9PE-01 17 55068496 55068496 G A SCPEP1 Missense_Mutation p.G195R 0.53 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PE-01 17 64208202 64208202 G A APOH 3'UTR 0.67 TCGA-UY-A9PE-01 17 64637550 64637550 C G PRKCA Silent p.L122L 0.13 TCGA-UY-A9PE-01 17 7577085 7577085 C A TP53 Nonsense_Mutation p.E285* 0.60 TCGA-UY-A9PE-01 17 7734771 7734771 C G DNAH2 Missense_Mutation p.Q4175E 0.73 benign(0.04) TCGA-UY-A9PE-01 17 79219706 79219706 C A SLC38A10 Missense_Mutation p.G1004W 0.38 deleterious(0) benign(0.029) TCGA-UY-A9PE-01 18 11886994 11886994 G A MPPE1 Silent p.N200N 0.12 TCGA-UY-A9PE-01 18 2718394 2718394 G A SMCHD1 Missense_Mutation p.R807K 0.16 tolerated(0.43) benign(0.065) TCGA-UY-A9PE-01 18 3567512 3567512 C T DLGAP1 Missense_Mutation p.G678E 0.16 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PE-01 19 10577863 10577863 G A PDE4A Missense_Mutation p.E743K 0.26 tolerated_low_confidence(0.27) benign(0.001) TCGA-UY-A9PE-01 19 1058681 1058681 G A ABCA7 Silent p.V1738V 0.11 TCGA-UY-A9PE-01 19 16666173 16666173 G A SLC35E1 Silent p.L264L 0.17 TCGA-UY-A9PE-01 19 17571580 17571580 C A NXNL1 Silent p.R33R 0.20 TCGA-UY-A9PE-01 19 39915088 39915088 G C PLEKHG2 Missense_Mutation p.Q1105H 0.37 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-UY-A9PE-01 19 42473007 42473007 C T ATP1A3 Missense_Mutation p.V930I 0.32 deleterious(0.04) probably_damaging(0.993) TCGA-UY-A9PE-01 19 42853768 42853768 C T MEGF8 Nonsense_Mutation p.Q739* 0.08 TCGA-UY-A9PE-01 19 44153142 44153142 C T PLAUR Missense_Mutation p.R303H 0.26 tolerated(0.07) probably_damaging(0.964) TCGA-UY-A9PE-01 19 46998760 46998760 G A PNMAL2 5'UTR 0.17 TCGA-UY-A9PE-01 19 51920678 51920678 C A SIGLEC10 Nonsense_Mutation p.E27* 0.11 TCGA-UY-A9PE-01 19 51920679 51920679 C A SIGLEC10 Missense_Mutation p.Q26H 0.11 deleterious(0) possibly_damaging(0.89) TCGA-UY-A9PE-01 1 12017946 12017946 C T PLOD1 Silent p.F263F 0.16 TCGA-UY-A9PE-01 1 12381920 12381920 C A VPS13D Missense_Mutation p.P2535T 0.11 probably_damaging(0.985) TCGA-UY-A9PE-01 1 145439043 145439043 C T TXNIP Nonsense_Mutation p.Q81* 0.21 TCGA-UY-A9PE-01 1 149916865 149916865 T G OTUD7B Missense_Mutation p.S475R 0.43 tolerated(0.15) benign(0.393) TCGA-UY-A9PE-01 1 151787566 151787566 C T RORC Missense_Mutation p.E212K 0.16 tolerated(0.12) benign(0.002) TCGA-UY-A9PE-01 1 152284263 152284263 G A FLG Silent p.H1033H 0.50 TCGA-UY-A9PE-01 1 153905400 153905400 C T DENND4B Missense_Mutation p.C1187Y 0.10 deleterious(0) probably_damaging(0.991) TCGA-UY-A9PE-01 1 156697422 156697422 A T ISG20L2 Missense_Mutation p.L8Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 1 16070673 16070673 G C TMEM82 Missense_Mutation p.E119Q 0.27 tolerated(0.33) benign(0.067) TCGA-UY-A9PE-01 1 160808726 160808726 C T CD244 Intron 0.13 TCGA-UY-A9PE-01 1 169388373 169388373 C T CCDC181 Missense_Mutation p.E365K 0.10 deleterious(0) possibly_damaging(0.804) TCGA-UY-A9PE-01 1 182368922 182368922 C G TEDDM1 Silent p.L233L 0.33 TCGA-UY-A9PE-01 1 186113310 186113310 G A HMCN1 Missense_Mutation p.G4644R 0.21 probably_damaging(0.999) TCGA-UY-A9PE-01 1 220936278 220936278 C G MARC2 Silent p.L212L 0.18 TCGA-UY-A9PE-01 1 224548228 224548228 A G CNIH4 Missense_Mutation p.Y34C 0.24 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 1 227920358 227920358 G A JMJD4 Missense_Mutation p.S376L 0.21 tolerated(0.11) benign(0.068) TCGA-UY-A9PE-01 1 232561497 232561497 C T SIPA1L2 Missense_Mutation p.E1490K 0.27 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 1 2328587 2328587 C T RER1 Silent p.P38P 0.24 TCGA-UY-A9PE-01 1 235295086 235295097 GTTTTAAGGAGA - RBM34 In_Frame_Del p.L409_T412del 0.14 TCGA-UY-A9PE-01 1 237880543 237880543 G A RYR2 Missense_Mutation p.D3457N 0.33 possibly_damaging(0.772) TCGA-UY-A9PE-01 1 237947885 237947885 C G RYR2 Missense_Mutation p.F4291L 0.18 benign(0) TCGA-UY-A9PE-01 1 247014245 247014245 G A AHCTF1 Missense_Mutation p.T1697I 0.22 tolerated(0.33) benign(0.055) TCGA-UY-A9PE-01 1 248436751 248436751 C T OR2T33 Silent p.A122A 0.18 TCGA-UY-A9PE-01 1 3425766 3425766 G A MEGF6 Silent p.F467F 0.30 TCGA-UY-A9PE-01 1 36551572 36551572 G C TEKT2 Missense_Mutation p.E140Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 1 45219503 45219503 C G KIF2C Missense_Mutation p.Q221E 0.38 deleterious(0.05) possibly_damaging(0.542) TCGA-UY-A9PE-01 1 45810576 45810576 G C TESK2 Nonsense_Mutation p.S551* 0.27 TCGA-UY-A9PE-01 1 52876865 52876865 G T PRPF38A Missense_Mutation p.R164L 0.16 deleterious(0) probably_damaging(0.991) TCGA-UY-A9PE-01 1 53675719 53675719 G C CPT2 Missense_Mutation p.D125H 0.34 tolerated(0.07) benign(0.034) TCGA-UY-A9PE-01 1 60392244 60392244 C T CYP2J2 Missense_Mutation p.V59M 0.47 tolerated(0.39) benign(0.007) TCGA-UY-A9PE-01 1 62374061 62374061 G A INADL Silent p.L1133L 0.19 TCGA-UY-A9PE-01 1 74929212 74929212 G A TNNI3K Missense_Mutation p.R801Q 0.52 tolerated(0.27) probably_damaging(0.993) TCGA-UY-A9PE-01 1 76190404 76190404 C G ACADM 5'Flank 0.24 TCGA-UY-A9PE-01 1 85648704 85648704 G A SYDE2 Nonsense_Mutation p.R541* 0.35 TCGA-UY-A9PE-01 1 94486818 94486818 C T ABCA4 Missense_Mutation p.E1666K 0.23 deleterious(0.04) possibly_damaging(0.896) TCGA-UY-A9PE-01 1 94486866 94486866 C T ABCA4 Missense_Mutation p.E1650K 0.17 tolerated(0.41) possibly_damaging(0.806) TCGA-UY-A9PE-01 20 23667809 23667809 G A CST4 Silent p.D86D 0.17 TCGA-UY-A9PE-01 20 30617624 30617624 G - CCM2L 3'UTR 0.13 TCGA-UY-A9PE-01 20 3171387 3171387 C T DDRGK1 Missense_Mutation p.R286Q 0.16 deleterious(0.02) probably_damaging(0.987) TCGA-UY-A9PE-01 20 32295438 32295438 G C PXMP4 3'UTR 0.20 TCGA-UY-A9PE-01 20 33147630 33147630 C G MAP1LC3A Missense_Mutation p.I102M 0.12 deleterious(0) possibly_damaging(0.639) TCGA-UY-A9PE-01 20 33203907 33203907 G A PIGU Missense_Mutation p.A189V 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A9PE-01 20 34145206 34145206 C G ERGIC3 Silent p.L366L 0.21 TCGA-UY-A9PE-01 20 34145283 34145283 C T ERGIC3 3'UTR 0.15 TCGA-UY-A9PE-01 20 35381213 35381213 G A DSN1 Missense_Mutation p.S350F 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-UY-A9PE-01 20 35866820 35866820 G A RPN2 Intron 0.36 TCGA-UY-A9PE-01 20 40162069 40162069 C G CHD6 Missense_Mutation p.Q58H 0.27 tolerated_low_confidence(0.34) benign(0.003) TCGA-UY-A9PE-01 20 49508787 49508787 C A ADNP Missense_Mutation p.V822L 0.13 deleterious(0.01) benign(0.087) TCGA-UY-A9PE-01 20 61512241 61512241 C T DIDO1 Silent p.A1689A 0.20 TCGA-UY-A9PE-01 20 61513017 61513017 C T DIDO1 Missense_Mutation p.E1431K 0.11 probably_damaging(0.997) TCGA-UY-A9PE-01 20 62421678 62421678 C G ZBTB46 Missense_Mutation p.E145Q 0.31 deleterious(0.01) probably_damaging(0.95) TCGA-UY-A9PE-01 21 37504963 37504963 C A CBR3 5'Flank 0.25 TCGA-UY-A9PE-01 21 43816058 43816058 C A TMPRSS3 5'UTR 0.10 TCGA-UY-A9PE-01 21 43816059 43816059 C G TMPRSS3 5'UTR 0.10 TCGA-UY-A9PE-01 22 19951162 19951162 C G COMT Nonsense_Mutation p.Y121* 0.40 TCGA-UY-A9PE-01 22 24123201 24123201 G T MMP11 Missense_Mutation p.G258C 0.06 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 22 41573897 41573897 C T EP300 Missense_Mutation p.P2061L 0.27 probably_damaging(0.995) TCGA-UY-A9PE-01 22 41610120 41610120 G C L3MBTL2 Intron 0.38 TCGA-UY-A9PE-01 2 100209753 100209753 G A AFF3 Silent p.S815S 0.07 TCGA-UY-A9PE-01 2 122154823 122154823 C A CLASP1 Missense_Mutation p.A1006S 0.19 deleterious(0.03) possibly_damaging(0.507) TCGA-UY-A9PE-01 2 122154824 122154824 C A CLASP1 Silent p.L1005L 0.19 TCGA-UY-A9PE-01 2 135012026 135012026 C G MGAT5 Missense_Mutation p.L18V 0.16 tolerated(0.14) benign(0.391) TCGA-UY-A9PE-01 2 163099441 163099441 C T FAP Missense_Mutation p.C23Y 0.19 tolerated(0.36) possibly_damaging(0.534) TCGA-UY-A9PE-01 2 167263125 167263125 G A SCN7A Silent p.Y1338Y 0.64 TCGA-UY-A9PE-01 2 16743410 16743410 C G FAM49A Splice_Site p.X100_splice 0.17 TCGA-UY-A9PE-01 2 169103958 169103958 G C STK39 5'UTR 0.19 TCGA-UY-A9PE-01 2 178096082 178096082 C T NFE2L2 Missense_Mutation p.V417M 0.20 tolerated(0.14) benign(0.004) TCGA-UY-A9PE-01 2 179475795 179475795 C T TTN Missense_Mutation p.D17021N 0.18 TCGA-UY-A9PE-01 2 179578650 179578650 C T TTN Missense_Mutation p.S8912N 0.14 TCGA-UY-A9PE-01 2 1926871 1926871 C A MYT1L Nonsense_Mutation p.E224* 0.06 TCGA-UY-A9PE-01 2 220313015 220313015 G T SPEG Nonsense_Mutation p.E379* 0.36 TCGA-UY-A9PE-01 2 231404055 231404055 C G SP100 Missense_Mutation p.S723C 0.16 deleterious(0.04) possibly_damaging(0.843) TCGA-UY-A9PE-01 2 233349277 233349277 G T ECEL1 Silent p.I363I 0.22 TCGA-UY-A9PE-01 2 25990538 25990538 G A ASXL2 Missense_Mutation p.S230F 0.14 deleterious(0.02) benign(0.14) TCGA-UY-A9PE-01 2 25990551 25990551 G C ASXL2 Missense_Mutation p.Q226E 0.15 deleterious(0.04) benign(0.214) TCGA-UY-A9PE-01 2 61188622 61188623 CA - PUS10 Frame_Shift_Del p.A284Sfs*11 0.12 TCGA-UY-A9PE-01 2 74742968 74742968 G C TLX2 Silent p.T203T 0.24 TCGA-UY-A9PE-01 2 85981372 85981372 G T ATOH8 Silent p.L20L 0.29 TCGA-UY-A9PE-01 2 86373192 86373192 C T IMMT Silent p.Q554Q 0.27 TCGA-UY-A9PE-01 2 86373211 86373211 C A IMMT Missense_Mutation p.G548V 0.23 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 2 86373220 86373220 C A IMMT Missense_Mutation p.R545I 0.23 deleterious(0) possibly_damaging(0.771) TCGA-UY-A9PE-01 2 8822191 8822191 G A ID2 5'UTR 0.47 TCGA-UY-A9PE-01 3 111768791 111768791 C T TMPRSS7 Missense_Mutation p.R228W 0.21 tolerated(0.07) benign(0.006) TCGA-UY-A9PE-01 3 112724658 112724658 G A C3orf17 Missense_Mutation p.R477W 0.24 deleterious(0.02) benign(0.002) TCGA-UY-A9PE-01 3 114057827 114057827 C A ZBTB20 3'UTR 0.16 TCGA-UY-A9PE-01 3 118624517 118624517 G C IGSF11 Nonsense_Mutation p.S210* 0.35 TCGA-UY-A9PE-01 3 122289441 122289441 C G DTX3L Missense_Mutation p.S692C 0.39 deleterious(0) possibly_damaging(0.848) TCGA-UY-A9PE-01 3 123339145 123339145 G C MYLK Silent p.S1759S 0.17 TCGA-UY-A9PE-01 3 123339146 123339146 G T MYLK Missense_Mutation p.S1759Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PE-01 3 130452780 130452780 A G PIK3R4 Silent p.I354I 0.38 TCGA-UY-A9PE-01 3 142522890 142522890 G T TRPC1 Missense_Mutation p.R610I 0.20 tolerated(0.07) benign(0.159) TCGA-UY-A9PE-01 3 15297562 15297562 G C SH3BP5 3'UTR 0.04 TCGA-UY-A9PE-01 3 183903943 183903943 G C ABCF3 5'UTR 0.29 TCGA-UY-A9PE-01 3 183903987 183903987 G A ABCF3 5'UTR 0.32 TCGA-UY-A9PE-01 3 184550507 184550507 G C VPS8 Missense_Mutation p.E85Q 0.38 tolerated(0.08) possibly_damaging(0.563) TCGA-UY-A9PE-01 3 188478043 188478043 G C LPP Missense_Mutation p.K461N 0.22 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 3 19556878 19556878 G A KCNH8 Missense_Mutation p.E834K 0.48 tolerated(0.15) benign(0.055) TCGA-UY-A9PE-01 3 38163813 38163813 G A DLEC1 Silent p.V1726V 0.10 TCGA-UY-A9PE-01 3 40557596 40557596 G C ZNF620 Missense_Mutation p.E171Q 0.63 tolerated(0.25) benign(0.264) TCGA-UY-A9PE-01 3 43389029 43389029 G T SNRK Silent p.T426T 0.06 TCGA-UY-A9PE-01 3 44541815 44541815 C T ZNF852 Missense_Mutation p.V152I 0.39 tolerated(1) benign(0.012) TCGA-UY-A9PE-01 3 44974655 44974655 T C ZDHHC3 Missense_Mutation p.M189V 0.20 deleterious(0.01) benign(0.119) TCGA-UY-A9PE-01 3 45780352 45780352 G T SACM1L Missense_Mutation p.W519L 0.07 tolerated(0.08) benign(0.001) TCGA-UY-A9PE-01 3 45780353 45780353 G T SACM1L Missense_Mutation p.W519C 0.07 deleterious(0) benign(0.438) TCGA-UY-A9PE-01 3 46716127 46716127 G A ALS2CL Silent p.F786F 0.23 TCGA-UY-A9PE-01 3 4718327 4718327 G A ITPR1 Missense_Mutation p.V922M 0.14 tolerated(0.3) probably_damaging(0.998) TCGA-UY-A9PE-01 3 47704056 47704056 C A SMARCC1 Missense_Mutation p.W642C 0.25 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 3 49006038 49006038 G T ARIH2 Nonsense_Mutation p.E204* 0.32 TCGA-UY-A9PE-01 3 49160696 49160696 G A LAMB2 Missense_Mutation p.R1365W 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 3 52869036 52869036 G C MUSTN1 5'UTR 0.21 TCGA-UY-A9PE-01 3 57203257 57203257 C T IL17RD 5'Flank 0.29 TCGA-UY-A9PE-01 3 9803355 9803355 G T CAMK1 Silent p.G172G 0.12 TCGA-UY-A9PE-01 4 106880211 106880211 G C NPNT Missense_Mutation p.D455H 0.16 deleterious(0.04) probably_damaging(1) TCGA-UY-A9PE-01 4 110667478 110667478 A C CFI Missense_Mutation p.D443E 0.18 tolerated(1) benign(0.002) TCGA-UY-A9PE-01 4 119660340 119660340 C T SEC24D Missense_Mutation p.E781K 0.21 deleterious(0.02) possibly_damaging(0.563) TCGA-UY-A9PE-01 4 121957572 121957572 G A NDNF Silent p.F518F 0.23 TCGA-UY-A9PE-01 4 126238833 126238833 G T FAT4 Missense_Mutation p.A423S 0.12 probably_damaging(0.996) TCGA-UY-A9PE-01 4 144336768 144336768 G A GAB1 Missense_Mutation p.G71R 0.27 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 4 148591836 148591836 C G PRMT10 Missense_Mutation p.E268Q 0.15 tolerated(0.09) probably_damaging(0.997) TCGA-UY-A9PE-01 4 155191121 155191121 G A DCHS2 Nonsense_Mutation p.Q1715* 0.20 TCGA-UY-A9PE-01 4 169837074 169837074 G C PALLD Missense_Mutation p.D916H 0.23 deleterious(0.04) probably_damaging(0.939) TCGA-UY-A9PE-01 4 30723354 30723354 G C PCDH7 Missense_Mutation p.D104H 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-UY-A9PE-01 4 55129982 55129982 C T PDGFRA Silent p.Y172Y 0.13 TCGA-UY-A9PE-01 4 57898690 57898690 C G IGFBP7 Missense_Mutation p.G244A 0.13 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 4 77305450 77305450 C A CCDC158 Nonsense_Mutation p.E173* 0.18 TCGA-UY-A9PE-01 4 77324327 77324327 C G CCDC158 Missense_Mutation p.D12H 0.24 deleterious_low_confidence(0.05) probably_damaging(0.998) TCGA-UY-A9PE-01 4 79258946 79258946 C T FRAS1 Silent p.F799F 0.21 TCGA-UY-A9PE-01 4 84377256 84377256 G T MRPS18C Missense_Mutation p.G9V 0.15 tolerated_low_confidence(0.15) benign(0.075) TCGA-UY-A9PE-01 5 13923437 13923437 G A DNAH5 Silent p.F130F 0.12 TCGA-UY-A9PE-01 5 142780104 142780104 C G NR3C1 Missense_Mutation p.D101H 0.47 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-UY-A9PE-01 5 145665577 145665577 G T RBM27 Missense_Mutation p.R1056L 0.15 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PE-01 5 38942964 38942964 C G RICTOR Missense_Mutation p.E1675Q 0.69 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 5 50091136 50091136 A T PARP8 Missense_Mutation p.K438M 0.30 deleterious_low_confidence(0) benign(0.332) TCGA-UY-A9PE-01 5 5466612 5466612 G A KIAA0947 Missense_Mutation p.E2020K 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 5 77806008 77806008 G C LHFPL2 Missense_Mutation p.S10W 0.13 deleterious(0) probably_damaging(1) TCGA-UY-A9PE-01 6 106555285 106555285 A T PRDM1 Missense_Mutation p.K801M 0.15 deleterious(0.01) possibly_damaging(0.779) TCGA-UY-A9PE-01 6 109309796 109309796 T C SESN1 Missense_Mutation p.T507A 0.43 deleterious(0) possibly_damaging(0.539) TCGA-UY-A9PE-01 6 125379252 125379252 G A RNF217 Silent p.K135K 0.14 TCGA-UY-A9PE-01 6 133767784 133767784 G A EYA4 Missense_Mutation p.D34N 0.07 tolerated(0.08) possibly_damaging(0.566) TCGA-UY-A9PE-01 6 134210372 134210372 G A TCF21 5'UTR 0.53 TCGA-UY-A9PE-01 6 143094654 143094654 C T HIVEP2 Missense_Mutation p.E408K 0.10 deleterious(0) probably_damaging(0.995) TCGA-UY-A9PE-01 6 144999632 144999632 G T UTRN Nonsense_Mutation p.E2524* 0.53 TCGA-UY-A9PE-01 6 145156965 145156965 G C UTRN Missense_Mutation p.E3239Q 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-UY-A9PE-01 6 15512463 15512463 G C JARID2 Missense_Mutation p.E993Q 0.15 deleterious(0.05) possibly_damaging(0.481) TCGA-UY-A9PE-01 6 15512550 15512550 G T JARID2 Missense_Mutation p.G1022W 0.17 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 6 15513564 15513564 G A JARID2 Missense_Mutation p.D1121N 0.36 tolerated(0.18) benign(0.081) TCGA-UY-A9PE-01 6 167595347 167595347 G A TCP10L2 Silent p.P335P 0.27 TCGA-UY-A9PE-01 6 26056216 26056216 C T HIST1H1C Silent p.P147P 0.32 TCGA-UY-A9PE-01 6 26225674 26225674 G A HIST1H3E Missense_Mutation p.E98K 0.30 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-UY-A9PE-01 6 27799149 27799149 C G HIST1H4K Missense_Mutation p.E53Q 0.23 deleterious(0.02) possibly_damaging(0.451) TCGA-UY-A9PE-01 6 33272324 33272324 G C TAPBP Missense_Mutation p.F320L 0.30 deleterious(0.01) possibly_damaging(0.753) TCGA-UY-A9PE-01 6 43141825 43141825 G A SRF Missense_Mutation p.E252K 0.38 deleterious(0) benign(0.292) TCGA-UY-A9PE-01 6 56471743 56471743 C T DST Intron 0.29 TCGA-UY-A9PE-01 6 86239960 86239960 C T SNX14 Missense_Mutation p.R615K 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-UY-A9PE-01 6 90604576 90604576 G A GJA10 Missense_Mutation p.R130K 0.22 tolerated(0.08) benign(0.164) TCGA-UY-A9PE-01 6 90642557 90642557 A C BACH2 Missense_Mutation p.M699R 0.22 deleterious(0) possibly_damaging(0.832) TCGA-UY-A9PE-01 7 100184195 100184195 G A FBXO24 5'Flank 0.29 TCGA-UY-A9PE-01 7 107303845 107303845 C T SLC26A4 Missense_Mutation p.S90L 0.14 deleterious(0) probably_damaging(0.961) TCGA-UY-A9PE-01 7 112407467 112407467 G C TMEM168 Missense_Mutation p.L627V 0.07 deleterious(0.02) benign(0.316) TCGA-UY-A9PE-01 7 135366235 135366235 G T SLC13A4 3'UTR 0.19 TCGA-UY-A9PE-01 7 135366236 135366236 G T SLC13A4 3'UTR 0.20 TCGA-UY-A9PE-01 7 148497603 148497603 G A CUL1 Missense_Mutation p.D754N 0.32 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PE-01 7 149461958 149461958 A G ZNF467 Missense_Mutation p.C545R 0.22 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PE-01 7 150751356 150751356 T G CDK5 Silent p.T245T 0.18 TCGA-UY-A9PE-01 7 157041071 157041071 G C UBE3C Missense_Mutation p.E831Q 0.15 deleterious(0) probably_damaging(0.976) TCGA-UY-A9PE-01 7 22533247 22533247 A G STEAP1B Missense_Mutation p.L98S 0.27 deleterious(0.03) benign(0.03) TCGA-UY-A9PE-01 7 27856053 27856053 C G TAX1BP1 Nonsense_Mutation p.S617* 0.13 TCGA-UY-A9PE-01 7 45112324 45112324 G C CCM2 Splice_Site p.X270_splice 0.27 TCGA-UY-A9PE-01 7 45753473 45753473 C T ADCY1 Missense_Mutation p.A1080V 0.15 deleterious_low_confidence(0.02) benign(0.075) TCGA-UY-A9PE-01 7 57529051 57529051 C A ZNF716 Missense_Mutation p.P295H 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-UY-A9PE-01 7 57529052 57529052 C A ZNF716 Silent p.P295P 0.21 TCGA-UY-A9PE-01 7 72419242 72419242 G C POM121 3'UTR 0.12 TCGA-UY-A9PE-01 7 813704 813704 G A HEATR2 Missense_Mutation p.E651K 0.06 tolerated(0.24) benign(0.016) TCGA-UY-A9PE-01 7 83029502 83029502 C T SEMA3E Missense_Mutation p.R403Q 0.12 tolerated(1) probably_damaging(0.921) TCGA-UY-A9PE-01 7 91924390 91924390 C T ANKIB1 Missense_Mutation p.S33F 0.36 deleterious(0.03) benign(0.27) TCGA-UY-A9PE-01 7 99097343 99097343 C G ZNF394 Missense_Mutation p.R125P 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-UY-A9PE-01 8 121473458 121473458 C A MTBP Missense_Mutation p.L314I 0.30 tolerated(0.07) possibly_damaging(0.899) TCGA-UY-A9PE-01 8 12958087 12958087 C T DLC1 Missense_Mutation p.E587K 0.15 deleterious(0.01) possibly_damaging(0.504) TCGA-UY-A9PE-01 8 12958130 12958130 C T DLC1 Silent p.P572P 0.26 TCGA-UY-A9PE-01 8 139601497 139601497 T A COL22A1 Nonstop_Mutation p.*1627Lext*13 0.25 TCGA-UY-A9PE-01 8 144811385 144811385 C T FAM83H Missense_Mutation p.A186T 0.17 deleterious(0) possibly_damaging(0.851) TCGA-UY-A9PE-01 8 68113751 68113751 C G ARFGEF1 Missense_Mutation p.D1740H 0.35 deleterious(0) probably_damaging(0.968) TCGA-UY-A9PE-01 8 90921817 90921817 G A OSGIN2 Missense_Mutation p.E23K 0.59 deleterious_low_confidence(0.02) possibly_damaging(0.737) TCGA-UY-A9PE-01 9 119115105 119115105 G A PAPPA Missense_Mutation p.C1362Y 0.14 deleterious(0) possibly_damaging(0.712) TCGA-UY-A9PE-01 9 120475520 120475520 C A TLR4 Missense_Mutation p.L372I 0.29 deleterious(0.01) possibly_damaging(0.703) TCGA-UY-A9PE-01 9 35714248 35714248 C T TLN1 Silent p.T1036T 0.10 TCGA-UY-A9PE-01 9 5919732 5919732 A T KIAA2026 Silent p.P2088P 0.50 TCGA-UY-A9PE-01 X 100349586 100349586 C T TMEM35 Nonsense_Mutation p.R49* 0.35 TCGA-UY-A9PE-01 X 100349628 100349628 C G TMEM35 Missense_Mutation p.L63V 0.30 tolerated(0.28) benign(0.004) TCGA-UY-A9PE-01 X 137821458 137821458 G A FGF13 Intron 0.69 TCGA-UY-A9PE-01 X 148037966 148037966 C A AFF2 Missense_Mutation p.N797K 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-UY-A9PE-01 X 15790687 15790687 G A CA5B Missense_Mutation p.D137N 0.28 tolerated(0.71) benign(0.004) TCGA-UY-A9PE-01 X 30268605 30268605 G A MAGEB1 5'UTR 0.57 TCGA-UY-A9PE-01 X 41029731 41029731 A T USP9X Silent p.T962T 0.51 TCGA-UY-A9PE-01 X 44733167 44733167 C T KDM6A Intron 0.68 TCGA-UY-A9PE-01 X 53592082 53592082 C T HUWE1 Missense_Mutation p.E2276K 0.56 possibly_damaging(0.708) TCGA-UY-A9PF-01 10 101491834 101491834 C T COX15 5'UTR 0.38 TCGA-UY-A9PF-01 10 102709862 102709862 G A FAM178A Silent p.Q1050Q 0.26 TCGA-UY-A9PF-01 10 106139890 106139890 A T CCDC147 Missense_Mutation p.D426V 0.20 tolerated(0.18) benign(0.034) TCGA-UY-A9PF-01 10 115348623 115348623 C A NRAP 3'UTR 0.26 TCGA-UY-A9PF-01 10 116062168 116062168 C T AFAP1L2 Missense_Mutation p.E454K 0.20 deleterious(0.05) benign(0.283) TCGA-UY-A9PF-01 10 118315611 118315611 C T PNLIP Missense_Mutation p.S304F 0.25 deleterious(0) possibly_damaging(0.457) TCGA-UY-A9PF-01 10 119799759 119799759 G A RAB11FIP2 Missense_Mutation p.S224L 0.25 tolerated(0.46) probably_damaging(0.985) TCGA-UY-A9PF-01 10 123845022 123845022 G A TACC2 Missense_Mutation p.E1003K 0.29 benign(0.044) TCGA-UY-A9PF-01 10 124909415 124909415 C T HMX2 Missense_Mutation p.R200C 0.26 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 10 134218733 134218733 G C PWWP2B Silent p.P243P 0.30 TCGA-UY-A9PF-01 10 15858863 15858863 C T FAM188A Missense_Mutation p.E285K 0.27 deleterious(0.01) benign(0.084) TCGA-UY-A9PF-01 10 21806663 21806663 G A SKIDA1 Missense_Mutation p.S30F 0.34 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 10 28283955 28283955 C T ARMC4 Silent p.E39E 0.10 TCGA-UY-A9PF-01 10 29762900 29762900 C T SVIL Missense_Mutation p.G1799E 0.14 deleterious(0.02) benign(0.424) TCGA-UY-A9PF-01 10 38145391 38145391 G A ZNF248 5'UTR 0.41 TCGA-UY-A9PF-01 10 3824223 3824223 A G KLF6 Missense_Mutation p.C96R 0.13 tolerated(0.47) benign(0.023) TCGA-UY-A9PF-01 10 4889869 4889869 C T AKR1E2 3'UTR 0.48 TCGA-UY-A9PF-01 10 64893141 64893141 C T NRBF2 5'UTR 0.29 TCGA-UY-A9PF-01 10 64966891 64966891 G A JMJD1C Missense_Mutation p.S1513L 0.33 tolerated(0.07) benign(0.001) TCGA-UY-A9PF-01 10 79614022 79614022 T G DLG5 Silent p.R215R 0.13 TCGA-UY-A9PF-01 10 85992614 85992614 C T LRIT1 Missense_Mutation p.G314D 0.15 tolerated(0.35) benign(0.042) TCGA-UY-A9PF-01 10 88719796 88719796 G A SNCG Missense_Mutation p.E68K 0.43 tolerated(0.15) possibly_damaging(0.642) TCGA-UY-A9PF-01 10 90342996 90342996 C T RNLS 5'Flank 0.37 TCGA-UY-A9PF-01 10 95110966 95110966 G A MYOF Silent p.L1303L 0.13 TCGA-UY-A9PF-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.17 TCGA-UY-A9PF-01 10 99205532 99205532 G A EXOSC1 Missense_Mutation p.S35L 0.28 deleterious(0) probably_damaging(0.927) TCGA-UY-A9PF-01 11 102668811 102668811 G A MMP1 Missense_Mutation p.P5S 0.15 deleterious(0.01) benign(0.001) TCGA-UY-A9PF-01 11 105481785 105481785 G A GRIA4 Missense_Mutation p.G21R 0.12 deleterious(0) possibly_damaging(0.76) TCGA-UY-A9PF-01 11 108175420 108175420 C T ATM Nonsense_Mutation p.Q1839* 0.39 TCGA-UY-A9PF-01 11 108186757 108186757 G A ATM Missense_Mutation p.E2039K 0.17 deleterious(0) benign(0.288) TCGA-UY-A9PF-01 11 111154910 111154910 G A C11orf53 Silent p.G39G 0.17 TCGA-UY-A9PF-01 11 118372453 118372453 C T KMT2A Missense_Mutation p.P2129L 0.22 benign(0.001) TCGA-UY-A9PF-01 11 118506132 118506132 G A PHLDB1 Missense_Mutation p.E801K 0.30 tolerated(0.38) benign(0.059) TCGA-UY-A9PF-01 11 122850025 122850025 G C BSX Missense_Mutation p.L135V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A9PF-01 11 126126678 126126678 G A FAM118B Missense_Mutation p.D305N 0.19 tolerated(0.26) benign(0.002) TCGA-UY-A9PF-01 11 128936651 128936651 G T ARHGAP32 Missense_Mutation p.S201Y 0.20 tolerated(1) benign(0.312) TCGA-UY-A9PF-01 11 129245901 129245901 C T BARX2 5'UTR 0.43 TCGA-UY-A9PF-01 11 14989313 14989313 C T CALCA 3'Flank 0.22 TCGA-UY-A9PF-01 11 14991493 14991493 C T CALCA Missense_Mutation p.R72K 0.20 tolerated(0.15) benign(0.005) TCGA-UY-A9PF-01 11 19261740 19261740 C T E2F8 5'UTR 0.10 TCGA-UY-A9PF-01 11 1944094 1944094 C A TNNT3 5'UTR 0.09 TCGA-UY-A9PF-01 11 3877488 3877488 G A STIM1 5'UTR 0.16 TCGA-UY-A9PF-01 11 4609033 4609033 C T OR52I2 Missense_Mutation p.R331W 0.13 deleterious(0.04) benign(0.001) TCGA-UY-A9PF-01 11 48188773 48188773 C T PTPRJ Silent p.L1291L 0.23 TCGA-UY-A9PF-01 11 533763 533763 C T HRAS Intron 0.22 TCGA-UY-A9PF-01 11 55703721 55703721 C T OR5I1 Silent p.R52R 0.14 TCGA-UY-A9PF-01 11 55927275 55927275 G A OR8K5 Silent p.V173V 0.33 TCGA-UY-A9PF-01 11 57080206 57080206 G A TNKS1BP1 Silent p.T652T 0.26 TCGA-UY-A9PF-01 11 59523078 59523078 G A STX3 5'UTR 0.23 TCGA-UY-A9PF-01 11 60161290 60161290 C T MS4A7 Missense_Mutation p.H227Y 0.21 tolerated(0.36) benign(0.004) TCGA-UY-A9PF-01 11 60184311 60184311 G A MS4A14 Missense_Mutation p.V657I 0.10 tolerated(0.47) benign(0.206) TCGA-UY-A9PF-01 11 61731633 61731633 C T BEST1 3'UTR 0.41 TCGA-UY-A9PF-01 11 62520867 62520867 C T ZBTB3 Silent p.L140L 0.25 TCGA-UY-A9PF-01 11 62554184 62554184 G A TAF6L Missense_Mutation p.E429K 0.35 tolerated_low_confidence(0.84) benign(0.015) TCGA-UY-A9PF-01 11 62554255 62554255 G A TAF6L Silent p.L452L 0.48 TCGA-UY-A9PF-01 11 63320463 63320463 C T HRASLS2 Silent p.L154L 0.25 TCGA-UY-A9PF-01 11 64054455 64054455 G A GPR137 Missense_Mutation p.V184M 0.10 tolerated(0.07) benign(0.382) TCGA-UY-A9PF-01 11 64595072 64595072 G A CDC42BPG Silent p.L1359L 0.38 TCGA-UY-A9PF-01 11 65350436 65350436 G A EHBP1L1 Missense_Mutation p.E765K 0.28 tolerated(0.09) benign(0.008) TCGA-UY-A9PF-01 11 69062996 69062996 C G MYEOV Intron 0.35 TCGA-UY-A9PF-01 11 69063005 69063005 G T MYEOV Intron 0.35 TCGA-UY-A9PF-01 11 73066580 73066580 C T ARHGEF17 Silent p.F1152F 0.15 TCGA-UY-A9PF-01 11 76823778 76823778 C T CAPN5 Silent p.L147L 0.27 TCGA-UY-A9PF-01 11 82996918 82996918 C T CCDC90B Missense_Mutation p.R33K 0.60 tolerated(0.08) benign(0.024) TCGA-UY-A9PF-01 11 85437064 85437064 C T SYTL2 Missense_Mutation p.E146K 0.28 deleterious(0) probably_damaging(0.945) TCGA-UY-A9PF-01 11 96074881 96074881 C G MAML2 Missense_Mutation p.R60P 0.14 probably_damaging(0.96) TCGA-UY-A9PF-01 11 9834085 9834085 G A SBF2 Silent p.F1383F 0.14 TCGA-UY-A9PF-01 12 102071130 102071130 G A MYBPC1 Missense_Mutation p.D1016N 0.28 tolerated(0.47) benign(0.007) TCGA-UY-A9PF-01 12 10324644 10324644 C T OLR1 Silent p.V11V 0.20 TCGA-UY-A9PF-01 12 10562211 10562211 G A KLRC4 5'UTR 0.27 TCGA-UY-A9PF-01 12 10588538 10588538 G A KLRC2 Silent p.D16D 0.08 TCGA-UY-A9PF-01 12 108136086 108136086 A C PRDM4 Missense_Mutation p.D507E 0.24 tolerated(0.52) benign(0.001) TCGA-UY-A9PF-01 12 110480103 110480103 T C C12orf76 3'UTR 0.27 TCGA-UY-A9PF-01 12 112622708 112622708 G A HECTD4 Silent p.F3208F 0.18 TCGA-UY-A9PF-01 12 124421791 124421791 G A CCDC92 Silent p.S270S 0.15 TCGA-UY-A9PF-01 12 133277905 133277905 C T PXMP2 Missense_Mutation p.R157W 0.34 deleterious(0) probably_damaging(0.939) TCGA-UY-A9PF-01 12 14927532 14927532 G A H2AFJ Missense_Mutation p.R43Q 0.23 deleterious_low_confidence(0.02) benign(0.316) TCGA-UY-A9PF-01 12 15475709 15475709 C T PTPRO Silent p.L17L 0.36 TCGA-UY-A9PF-01 12 15823804 15823804 G A EPS8 Nonsense_Mutation p.Q64* 0.18 TCGA-UY-A9PF-01 12 1702042 1702042 C T FBXL14 Silent p.E397E 0.38 TCGA-UY-A9PF-01 12 20522857 20522857 C T PDE3A Silent p.L213L 0.18 TCGA-UY-A9PF-01 12 31613133 31613133 G A DENND5B Nonsense_Mutation p.Q363* 0.21 TCGA-UY-A9PF-01 12 32908693 32908693 A C YARS2 Missense_Mutation p.L39R 0.27 deleterious(0) probably_damaging(0.979) TCGA-UY-A9PF-01 12 46243370 46243389 TTTCCAAATCATACAGTGAA - ARID2 Frame_Shift_Del p.F575Efs*7 0.28 TCGA-UY-A9PF-01 12 46243450 46243450 G A ARID2 Silent p.R601R 0.24 TCGA-UY-A9PF-01 12 46245204 46245204 C T ARID2 Nonsense_Mutation p.Q1100* 0.22 TCGA-UY-A9PF-01 12 48358116 48358116 G A TMEM106C Missense_Mutation p.E33K 0.33 tolerated(0.06) possibly_damaging(0.622) TCGA-UY-A9PF-01 12 48370632 48370632 C T COL2A1 Missense_Mutation p.R1133H 0.27 unknown(0) TCGA-UY-A9PF-01 12 48543217 48543217 G A ASB8 Missense_Mutation p.L267F 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-UY-A9PF-01 12 51736434 51736434 T G CELA1 Missense_Mutation p.D84A 0.15 deleterious(0) benign(0.274) TCGA-UY-A9PF-01 12 52840955 52840955 G A KRT6B 3'UTR 0.26 TCGA-UY-A9PF-01 12 53344643 53344643 G A KRT18 Missense_Mutation p.E204K 0.42 tolerated(0.18) benign(0.19) TCGA-UY-A9PF-01 12 53410385 53410385 G A EIF4B Missense_Mutation p.E48K 0.21 deleterious(0.01) benign(0.292) TCGA-UY-A9PF-01 12 53589822 53589822 C T ITGB7 Intron 0.22 TCGA-UY-A9PF-01 12 53607344 53607344 G A RARG Silent p.L318L 0.27 TCGA-UY-A9PF-01 12 53607867 53607867 G A RARG Silent p.L263L 0.27 TCGA-UY-A9PF-01 12 53899600 53899600 G A TARBP2 Silent p.E303E 0.07 TCGA-UY-A9PF-01 12 54348978 54348978 G A HOXC12 Missense_Mutation p.E89K 0.40 deleterious(0.03) benign(0.199) TCGA-UY-A9PF-01 12 57674138 57674138 C T R3HDM2 Intron 0.26 TCGA-UY-A9PF-01 12 58158980 58158980 G C CYP27B1 Missense_Mutation p.L202V 0.26 deleterious(0.02) probably_damaging(0.974) TCGA-UY-A9PF-01 12 6184556 6184556 C T VWF Silent p.R273R 0.31 TCGA-UY-A9PF-01 12 6184557 6184557 C T VWF Missense_Mutation p.R273Q 0.31 deleterious(0) probably_damaging(0.986) TCGA-UY-A9PF-01 12 62785091 62785091 G C USP15 Silent p.T705T 0.20 TCGA-UY-A9PF-01 12 63544139 63544139 G A AVPR1A Silent p.L160L 0.25 TCGA-UY-A9PF-01 12 6560005 6560005 G A CD27 Intron 0.25 TCGA-UY-A9PF-01 12 66597627 66597627 C T IRAK3 Silent p.L90L 0.24 TCGA-UY-A9PF-01 12 7053317 7053317 G A C12orf57 Silent p.L11L 0.23 TCGA-UY-A9PF-01 12 7054938 7054938 C T C12orf57 Silent p.V78V 0.52 TCGA-UY-A9PF-01 12 7076694 7076694 C T PHB2 Intron 0.29 TCGA-UY-A9PF-01 12 72080492 72080492 G A TMEM19 Missense_Mutation p.R11K 0.28 tolerated(0.54) benign(0.03) TCGA-UY-A9PF-01 12 94965325 94965325 C T TMCC3 Missense_Mutation p.M440I 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-UY-A9PF-01 12 95660224 95660224 C T VEZT Silent p.L176L 0.23 TCGA-UY-A9PF-01 13 108922315 108922315 G A TNFSF13B Silent p.L24L 0.30 TCGA-UY-A9PF-01 13 110960240 110960240 G A COL4A2 5'UTR 0.21 TCGA-UY-A9PF-01 13 46616309 46616309 G A ZC3H13 Missense_Mutation p.S110L 0.09 unknown(0) TCGA-UY-A9PF-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.28 TCGA-UY-A9PF-01 13 52768345 52768345 G A MRPS31P5 RNA 0.31 TCGA-UY-A9PF-01 14 105420698 105420698 C T AHNAK2 Missense_Mutation p.D364N 0.11 possibly_damaging(0.61) TCGA-UY-A9PF-01 14 106805318 106805318 G A IGHV4-31 Missense_Mutation p.P82L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-UY-A9PF-01 14 23312545 23312545 C T MMP14 Silent p.I256I 0.30 TCGA-UY-A9PF-01 14 23521727 23521727 C T CDH24 Missense_Mutation p.E440K 0.18 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 14 23549910 23549910 C T ACIN1 Missense_Mutation p.E270K 0.15 probably_damaging(0.98) TCGA-UY-A9PF-01 14 24584661 24584661 G A DCAF11 5'UTR 0.35 TCGA-UY-A9PF-01 14 24621199 24621199 C T RNF31 Missense_Mutation p.R710W 0.12 deleterious(0) possibly_damaging(0.582) TCGA-UY-A9PF-01 14 31424874 31424874 C T STRN3 Missense_Mutation p.G138S 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 14 31602500 31602500 C T HECTD1 Missense_Mutation p.R1289Q 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A9PF-01 14 52169290 52169290 A C FRMD6 Missense_Mutation p.N119H 0.38 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 14 64537452 64537452 C T SYNE2 Silent p.L3507L 0.15 TCGA-UY-A9PF-01 14 65406114 65406114 G A GPX2 3'UTR 0.12 TCGA-UY-A9PF-01 14 65409384 65409384 C T GPX2 Missense_Mutation p.V21I 0.17 tolerated(0.83) benign(0.001) TCGA-UY-A9PF-01 14 67671469 67671469 G T FAM71D Missense_Mutation p.G192V 0.19 deleterious(0) benign(0.424) TCGA-UY-A9PF-01 14 67671513 67671513 G C FAM71D Missense_Mutation p.D207H 0.23 deleterious(0) probably_damaging(0.976) TCGA-UY-A9PF-01 14 67671651 67671651 G A FAM71D Missense_Mutation p.E253K 0.29 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-UY-A9PF-01 14 68221801 68221801 A T ZFYVE26 Missense_Mutation p.F2318Y 0.16 deleterious(0.02) benign(0.404) TCGA-UY-A9PF-01 14 69392326 69392326 C T ACTN1 Missense_Mutation p.E57K 0.14 tolerated(0.16) benign(0.132) TCGA-UY-A9PF-01 14 77239647 77239647 C T VASH1 Intron 0.36 TCGA-UY-A9PF-01 14 77843921 77843921 G A SAMD15 Missense_Mutation p.E54K 0.37 deleterious(0.04) possibly_damaging(0.46) TCGA-UY-A9PF-01 14 78201322 78201322 G A SNW1 Missense_Mutation p.P248S 0.17 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 14 91338522 91338522 G A RPS6KA5 Missense_Mutation p.H769Y 0.14 tolerated(0.05) benign(0.14) TCGA-UY-A9PF-01 14 93393028 93393028 G A CHGA Missense_Mutation p.E58K 0.18 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 14 94722867 94722867 C T PPP4R4 Nonsense_Mutation p.Q646* 0.18 TCGA-UY-A9PF-01 15 100214623 100214623 C G MEF2A Nonsense_Mutation p.S141* 0.26 TCGA-UY-A9PF-01 15 29346421 29346421 G C APBA2 Missense_Mutation p.E112Q 0.22 tolerated_low_confidence(0.05) benign(0.107) TCGA-UY-A9PF-01 15 40384060 40384060 C G BMF Missense_Mutation p.W161C 0.36 deleterious(0) possibly_damaging(0.823) TCGA-UY-A9PF-01 15 40949606 40949606 G C CASC5 Missense_Mutation p.E2242D 0.25 deleterious(0) probably_damaging(0.973) TCGA-UY-A9PF-01 15 41046881 41046881 C T RMDN3 Missense_Mutation p.R34Q 0.35 tolerated(0.14) possibly_damaging(0.851) TCGA-UY-A9PF-01 15 41222096 41222096 G A DLL4 Missense_Mutation p.E40K 0.33 tolerated(1) benign(0.164) TCGA-UY-A9PF-01 15 41796248 41796248 G A LTK Silent p.L847L 0.27 TCGA-UY-A9PF-01 15 42853541 42853541 G C HAUS2 Missense_Mutation p.R110S 0.13 deleterious(0) probably_damaging(0.977) TCGA-UY-A9PF-01 15 45562397 45562397 G C SLC28A2 Missense_Mutation p.R524T 0.20 deleterious(0) possibly_damaging(0.872) TCGA-UY-A9PF-01 15 48441490 48441490 C T MYEF2 Missense_Mutation p.R486K 0.24 deleterious(0.01) benign(0.108) TCGA-UY-A9PF-01 15 52632551 52632551 C T MYO5A Missense_Mutation p.E1361K 0.24 tolerated(0.19) benign(0.014) TCGA-UY-A9PF-01 15 56923863 56923863 C T ZNF280D Missense_Mutation p.E925K 0.15 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 15 57511672 57511672 G A TCF12 Intron 0.22 TCGA-UY-A9PF-01 15 60748944 60748944 T C NARG2 Missense_Mutation p.Y193C 0.28 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PF-01 15 65578618 65578618 G A PARP16 Silent p.R49R 0.31 TCGA-UY-A9PF-01 15 67665746 67665746 G A IQCH Silent p.R449R 0.09 TCGA-UY-A9PF-01 15 69328274 69328274 G A NOX5 Missense_Mutation p.E396K 0.18 tolerated(0.06) possibly_damaging(0.513) TCGA-UY-A9PF-01 15 72190082 72190082 C G MYO9A Missense_Mutation p.D1588H 0.35 deleterious_low_confidence(0.03) benign(0.396) TCGA-UY-A9PF-01 15 72190136 72190136 C T MYO9A Missense_Mutation p.E1570K 0.31 deleterious_low_confidence(0.04) benign(0.132) TCGA-UY-A9PF-01 15 72190304 72190304 C T MYO9A Missense_Mutation p.E1514K 0.31 tolerated_low_confidence(0.08) benign(0.004) TCGA-UY-A9PF-01 15 72190373 72190373 C T MYO9A Missense_Mutation p.E1491K 0.25 tolerated_low_confidence(0.09) possibly_damaging(0.877) TCGA-UY-A9PF-01 15 72190380 72190380 C G MYO9A Missense_Mutation p.K1488N 0.26 deleterious_low_confidence(0.01) benign(0.161) TCGA-UY-A9PF-01 15 75980206 75980206 C T CSPG4 Missense_Mutation p.S1067N 0.12 tolerated(0.1) benign(0.02) TCGA-UY-A9PF-01 15 77750761 77750761 G A HMG20A Silent p.L4L 0.15 TCGA-UY-A9PF-01 15 78393882 78393882 G A SH2D7 Silent p.E429E 0.30 TCGA-UY-A9PF-01 15 80215427 80215427 G C C15orf37 Silent p.R104R 0.36 TCGA-UY-A9PF-01 15 86124722 86124722 G A AKAP13 Silent p.V1141V 0.17 TCGA-UY-A9PF-01 15 89834871 89834871 G C FANCI Missense_Mutation p.D640H 0.09 deleterious(0) probably_damaging(0.981) TCGA-UY-A9PF-01 15 90794785 90794785 G A TTLL13 Splice_Site p.X86_splice 0.28 TCGA-UY-A9PF-01 15 99762005 99762005 G A TTC23 Missense_Mutation p.S82L 0.21 tolerated(0.48) benign(0.118) TCGA-UY-A9PF-01 16 1573576 1573576 G A IFT140 Silent p.F1132F 0.45 TCGA-UY-A9PF-01 16 2034787 2034787 G A GFER Missense_Mutation p.E100K 0.19 deleterious(0) benign(0.325) TCGA-UY-A9PF-01 16 21170666 21170666 C T DNAH3 Missense_Mutation p.E33K 0.31 tolerated_low_confidence(0.79) benign(0) TCGA-UY-A9PF-01 16 23436128 23436128 G A COG7 Silent p.F317F 0.14 TCGA-UY-A9PF-01 16 23481411 23481411 G A GGA2 Missense_Mutation p.P509L 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-UY-A9PF-01 16 28935728 28935728 C T RABEP2 Silent p.L90L 0.20 TCGA-UY-A9PF-01 16 29937120 29937120 C T KCTD13 Missense_Mutation p.D79N 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-UY-A9PF-01 16 30198143 30198143 G C CORO1A Missense_Mutation p.E110Q 0.16 tolerated(1) benign(0.188) TCGA-UY-A9PF-01 16 48381455 48381455 G A LONP2 Missense_Mutation p.G659D 0.14 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 16 4930090 4930090 C T UBN1 Missense_Mutation p.S1121F 0.22 deleterious(0) possibly_damaging(0.613) TCGA-UY-A9PF-01 16 4930098 4930098 C T UBN1 Missense_Mutation p.H1124Y 0.22 tolerated(0.07) probably_damaging(0.985) TCGA-UY-A9PF-01 16 4930140 4930140 C A UBN1 3'UTR 0.19 TCGA-UY-A9PF-01 16 5135604 5135604 C T FAM86A 3'UTR 0.12 TCGA-UY-A9PF-01 16 57697428 57697428 G T GPR56 Silent p.L672L 0.24 TCGA-UY-A9PF-01 16 58032278 58032278 C T ZNF319 5'UTR 0.17 TCGA-UY-A9PF-01 16 67305065 67305066 CG - SLC9A5 Frame_Shift_Del p.A882Yfs*35 0.30 TCGA-UY-A9PF-01 16 67469922 67469922 C T HSD11B2 Missense_Mutation p.P181S 0.33 tolerated(0.15) probably_damaging(0.988) TCGA-UY-A9PF-01 16 69373925 69373925 C T NIP7 Nonsense_Mutation p.Q25* 0.31 TCGA-UY-A9PF-01 16 71807214 71807214 G A AP1G1 Silent p.L126L 0.15 TCGA-UY-A9PF-01 16 73126834 73126834 G A HCCAT5 RNA 0.10 TCGA-UY-A9PF-01 16 81735360 81735360 C A CMIP Silent p.R617R 0.16 TCGA-UY-A9PF-01 16 84256132 84256132 T A KCNG4 Silent p.T417T 0.25 TCGA-UY-A9PF-01 16 84691110 84691110 G C KLHL36 Missense_Mutation p.E233Q 0.16 tolerated(0.15) benign(0.016) TCGA-UY-A9PF-01 17 1582626 1582626 C T PRPF8 Silent p.L456L 0.18 TCGA-UY-A9PF-01 17 26919760 26919760 C T SPAG5 Missense_Mutation p.D168N 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.903) TCGA-UY-A9PF-01 17 27909018 27909018 C T GIT1 Missense_Mutation p.E184K 0.19 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PF-01 17 30594829 30594829 G A RHBDL3 Intron 0.40 TCGA-UY-A9PF-01 17 33467040 33467040 C T NLE1 Missense_Mutation p.V70I 0.06 tolerated(0.28) benign(0.005) TCGA-UY-A9PF-01 17 34044340 34044340 G C AP2B1 Missense_Mutation p.R918P 0.11 tolerated(0.05) possibly_damaging(0.594) TCGA-UY-A9PF-01 17 37369266 37369266 C T STAC2 Missense_Mutation p.M371I 0.14 tolerated(0.57) benign(0.024) TCGA-UY-A9PF-01 17 38711378 38711378 G A CCR7 Silent p.L251L 0.09 TCGA-UY-A9PF-01 17 41003699 41003699 G A AOC3 Silent p.L113L 0.28 TCGA-UY-A9PF-01 17 42988614 42988614 C T GFAP Missense_Mutation p.E373K 0.29 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 17 43005492 43005492 G A KIF18B Silent p.L726L 0.35 TCGA-UY-A9PF-01 17 43180480 43180480 C T NMT1 Silent p.F385F 0.20 TCGA-UY-A9PF-01 17 43318511 43318511 C T FMNL1 Missense_Mutation p.R416W 0.16 deleterious(0.04) unknown(0) TCGA-UY-A9PF-01 17 4453499 4453499 G A MYBBP1A Silent p.F391F 0.11 TCGA-UY-A9PF-01 17 46607833 46607833 C A HOXB1 Missense_Mutation p.G145V 0.10 deleterious(0.01) benign(0.109) TCGA-UY-A9PF-01 17 46799817 46799817 C T PRAC1 5'UTR 0.33 TCGA-UY-A9PF-01 17 4688890 4688890 G A VMO1 Missense_Mutation p.R126C 0.21 deleterious(0.01) probably_damaging(1) TCGA-UY-A9PF-01 17 4872089 4872089 C T CAMTA2 Missense_Mutation p.G1213E 0.35 deleterious_low_confidence(0) benign(0.041) TCGA-UY-A9PF-01 17 48745850 48745850 G A ABCC3 Silent p.Q614Q 0.23 TCGA-UY-A9PF-01 17 5317411 5317411 G A NUP88 Silent p.L171L 0.17 TCGA-UY-A9PF-01 17 56569085 56569085 G A MTMR4 Missense_Mutation p.S1176F 0.28 deleterious(0) benign(0.03) TCGA-UY-A9PF-01 17 56665368 56665368 C G TEX14 Missense_Mutation p.R870T 0.22 tolerated(0.13) benign(0.055) TCGA-UY-A9PF-01 17 59560724 59560724 C T TBX4 Silent p.R495R 0.06 TCGA-UY-A9PF-01 17 60112905 60112905 C T MED13 Missense_Mutation p.E179K 0.26 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 17 61498792 61498792 G A TANC2 Missense_Mutation p.E1817K 0.17 tolerated_low_confidence(0.07) benign(0.014) TCGA-UY-A9PF-01 17 61615776 61615776 G A KCNH6 Silent p.L569L 0.42 TCGA-UY-A9PF-01 17 6358829 6358829 C T PITPNM3 Silent p.R918R 0.24 TCGA-UY-A9PF-01 17 65124886 65124886 C T HELZ Missense_Mutation p.E1090K 0.31 deleterious(0.02) possibly_damaging(0.688) TCGA-UY-A9PF-01 17 6531749 6531749 T C KIAA0753 Missense_Mutation p.K136E 0.33 tolerated(0.09) probably_damaging(0.986) TCGA-UY-A9PF-01 17 6606418 6606418 T - SLC13A5 Frame_Shift_Del p.Q196Rfs*13 0.21 TCGA-UY-A9PF-01 17 71228427 71228427 C T FAM104A Missense_Mutation p.D7N 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-UY-A9PF-01 17 73975175 73975175 G A ACOX1 5'UTR 0.18 TCGA-UY-A9PF-01 17 74019586 74019586 C T EVPL Silent p.E116E 0.34 TCGA-UY-A9PF-01 17 74470869 74470869 A G RHBDF2 Silent p.G444G 0.13 TCGA-UY-A9PF-01 17 7481290 7481290 C T EIF4A1 Intron 0.32 TCGA-UY-A9PF-01 17 79478046 79478046 C T ACTG1 Silent p.T297T 0.22 TCGA-UY-A9PF-01 17 79517866 79517866 G A C17orf70 Silent p.F218F 0.45 TCGA-UY-A9PF-01 17 79826907 79826907 C T ARHGDIA Missense_Mutation p.E154K 0.31 deleterious(0.01) benign(0.244) TCGA-UY-A9PF-01 17 79827057 79827057 C T ARHGDIA Missense_Mutation p.G136D 0.14 deleterious(0) possibly_damaging(0.824) TCGA-UY-A9PF-01 17 79876020 79876020 G A SIRT7 5'UTR 0.13 TCGA-UY-A9PF-01 17 79985566 79985566 G T LRRC45 Missense_Mutation p.V284L 0.16 tolerated(0.11) benign(0.004) TCGA-UY-A9PF-01 17 79994632 79994632 C T DCXR Missense_Mutation p.E105K 0.22 tolerated(0.09) benign(0.004) TCGA-UY-A9PF-01 17 9923156 9923156 G C GAS7 Missense_Mutation p.P81R 0.10 deleterious(0.01) benign(0.309) TCGA-UY-A9PF-01 18 11884522 11884522 G A MPPE1 Silent p.L371L 0.15 TCGA-UY-A9PF-01 18 21121106 21121106 C T NPC1 Missense_Mutation p.E814K 0.34 tolerated(0.12) benign(0.013) TCGA-UY-A9PF-01 18 21662956 21662956 G A TTC39C Missense_Mutation p.E299K 0.17 tolerated(0.07) possibly_damaging(0.799) TCGA-UY-A9PF-01 18 23854959 23854959 G A TAF4B Missense_Mutation p.S275N 0.23 deleterious(0.05) possibly_damaging(0.864) TCGA-UY-A9PF-01 18 33289645 33289645 G A GALNT1 Missense_Mutation p.D531N 0.14 tolerated(0.12) benign(0.054) TCGA-UY-A9PF-01 18 3499227 3499227 C T DLGAP1 Missense_Mutation p.E964K 0.31 deleterious(0) benign(0.36) TCGA-UY-A9PF-01 18 3597106 3597106 C T DLGAP1 Intron 0.31 TCGA-UY-A9PF-01 18 3597222 3597222 C T DLGAP1 Intron 0.38 TCGA-UY-A9PF-01 18 43204693 43204693 G A SLC14A2 Missense_Mutation p.E22K 0.20 deleterious_low_confidence(0.01) benign(0.164) TCGA-UY-A9PF-01 18 44601724 44601724 G A KATNAL2 Missense_Mutation p.R290K 0.35 deleterious(0) probably_damaging(0.96) TCGA-UY-A9PF-01 18 54361853 54361853 C T WDR7 Silent p.L324L 0.08 TCGA-UY-A9PF-01 18 60570339 60570339 C G PHLPP1 Missense_Mutation p.Q863E 0.17 tolerated(0.26) benign(0.064) TCGA-UY-A9PF-01 18 67833369 67833369 G A RTTN Missense_Mutation p.L620F 0.20 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 18 7044769 7044769 G A LAMA1 Nonsense_Mutation p.Q310* 0.10 TCGA-UY-A9PF-01 18 77895771 77895771 C T ADNP2 Silent p.F825F 0.33 TCGA-UY-A9PF-01 19 1037965 1037965 C T CNN2 3'UTR 0.56 TCGA-UY-A9PF-01 19 10741808 10741808 C G SLC44A2 Silent p.P107P 0.11 TCGA-UY-A9PF-01 19 12491072 12491072 T C CTD-3105H18.14 3'UTR 0.33 TCGA-UY-A9PF-01 19 13007083 13007083 C T GCDH Missense_Mutation p.R234W 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-UY-A9PF-01 19 13007118 13007118 C T GCDH Silent p.L245L 0.14 TCGA-UY-A9PF-01 19 13007178 13007178 C G GCDH Missense_Mutation p.I265M 0.21 tolerated_low_confidence(0.16) benign(0.028) TCGA-UY-A9PF-01 19 16643425 16643425 C A CHERP Missense_Mutation p.D220Y 0.31 deleterious(0) probably_damaging(0.923) TCGA-UY-A9PF-01 19 16643432 16643432 C G CHERP Silent p.L217L 0.25 TCGA-UY-A9PF-01 19 16643507 16643507 C G CHERP Silent p.L192L 0.15 TCGA-UY-A9PF-01 19 16677355 16677355 G A SLC35E1 Silent p.V248V 0.16 TCGA-UY-A9PF-01 19 19606911 19606911 C T GATAD2A Silent p.L269L 0.15 TCGA-UY-A9PF-01 19 19681409 19681409 C T PBX4 Missense_Mutation p.E143K 0.23 tolerated(0.08) possibly_damaging(0.817) TCGA-UY-A9PF-01 19 32873817 32873817 C T ZNF507 Missense_Mutation p.S897F 0.33 tolerated(0.44) probably_damaging(0.962) TCGA-UY-A9PF-01 19 35990857 35990857 C T DMKN Intron 0.20 TCGA-UY-A9PF-01 19 3643268 3643268 G A PIP5K1C Missense_Mutation p.S541L 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.604) TCGA-UY-A9PF-01 19 3653353 3653353 C T PIP5K1C Missense_Mutation p.E286K 0.23 tolerated(0.06) possibly_damaging(0.86) TCGA-UY-A9PF-01 19 39109921 39109921 G A EIF3K Missense_Mutation p.E5K 0.33 deleterious(0.01) benign(0.27) TCGA-UY-A9PF-01 19 3979977 3979977 G A EEF2 Silent p.F478F 0.27 TCGA-UY-A9PF-01 19 39955531 39955531 G A SUPT5H Missense_Mutation p.E240K 0.16 deleterious(0.01) possibly_damaging(0.542) TCGA-UY-A9PF-01 19 41224091 41224091 G A ITPKC Missense_Mutation p.E351K 0.25 deleterious(0.02) benign(0.067) TCGA-UY-A9PF-01 19 41313073 41313073 G A EGLN2 Missense_Mutation p.E332K 0.25 tolerated(0.05) benign(0.063) TCGA-UY-A9PF-01 19 4338779 4338779 C T STAP2 5'UTR 0.50 TCGA-UY-A9PF-01 19 45872210 45872210 C T ERCC2 Missense_Mutation p.R75K 0.23 deleterious(0) possibly_damaging(0.755) TCGA-UY-A9PF-01 19 46142324 46142324 A T EML2 Intron 0.16 TCGA-UY-A9PF-01 19 46283178 46283178 G A DMPK Missense_Mutation p.S47F 0.32 tolerated_low_confidence(0.68) benign(0.011) TCGA-UY-A9PF-01 19 46733686 46733686 G A IGFL1 Missense_Mutation p.E79K 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-UY-A9PF-01 19 48229168 48229168 C T EHD2 Missense_Mutation p.S201L 0.29 tolerated(0.09) benign(0.158) TCGA-UY-A9PF-01 19 50375147 50375147 C T AKT1S1 Splice_Site p.X147_splice 0.18 TCGA-UY-A9PF-01 19 52327252 52327252 C T FPR3 Missense_Mutation p.S84L 0.29 tolerated(0.06) possibly_damaging(0.643) TCGA-UY-A9PF-01 19 52658993 52658993 C T ZNF836 Missense_Mutation p.S648N 0.21 tolerated(0.19) benign(0.203) TCGA-UY-A9PF-01 19 54238165 54238165 C T MIR518D RNA 0.19 TCGA-UY-A9PF-01 19 54483145 54483145 T G CACNG8 Missense_Mutation p.F131C 0.33 deleterious(0) probably_damaging(0.993) TCGA-UY-A9PF-01 19 54660723 54660723 C T LENG1 Missense_Mutation p.G118D 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-UY-A9PF-01 19 55669030 55669030 G A TNNI3 5'UTR 0.35 TCGA-UY-A9PF-01 19 56185414 56185414 C T U2AF2 Missense_Mutation p.H470Y 0.31 deleterious(0.01) benign(0.15) TCGA-UY-A9PF-01 19 57984545 57984545 C G ZNF772 3'UTR 0.44 TCGA-UY-A9PF-01 19 58324669 58324669 G A ZNF552 Silent p.S51S 0.26 TCGA-UY-A9PF-01 19 5914490 5914490 G A CAPS Missense_Mutation p.G25S 0.28 tolerated(0.09) benign(0.183) TCGA-UY-A9PF-01 19 7963812 7963812 C T LRRC8E Silent p.F135F 0.29 TCGA-UY-A9PF-01 19 8971691 8971691 C T MUC16 Missense_Mutation p.D14301N 0.27 possibly_damaging(0.802) TCGA-UY-A9PF-01 1 100340916 100340916 A G AGL Silent p.A396A 0.30 TCGA-UY-A9PF-01 1 10132131 10132131 C T UBE4B Nonsense_Mutation p.Q24* 0.20 TCGA-UY-A9PF-01 1 104112982 104112982 C T AMY2B Intron 0.17 TCGA-UY-A9PF-01 1 109472377 109472377 C T GPSM2 Missense_Mutation p.P624S 0.16 tolerated(0.07) benign(0.062) TCGA-UY-A9PF-01 1 109968928 109968928 C T PSMA5 Missense_Mutation p.D9N 0.13 deleterious(0.01) probably_damaging(1) TCGA-UY-A9PF-01 1 110768800 110768800 G T KCNC4 Missense_Mutation p.G607C 0.21 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-UY-A9PF-01 1 110950434 110950434 G A LAMTOR5 Missense_Mutation p.R19C 0.26 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-UY-A9PF-01 1 11140848 11140872 GTTTTATCCCTCCAGGCAAACAGCA - EXOSC10 Frame_Shift_Del p.L512Qfs*17 0.36 TCGA-UY-A9PF-01 1 11159913 11159913 C T EXOSC10 5'UTR 0.25 TCGA-UY-A9PF-01 1 112281937 112281937 C T FAM212B 5'UTR 0.21 TCGA-UY-A9PF-01 1 113202342 113202342 G A CAPZA1 Missense_Mutation p.E176K 0.20 tolerated(0.15) possibly_damaging(0.509) TCGA-UY-A9PF-01 1 114640370 114640370 C T SYT6 Silent p.E413E 0.11 TCGA-UY-A9PF-01 1 115828703 115828703 C T NGF Silent p.V238V 0.17 TCGA-UY-A9PF-01 1 118568022 118568022 C T SPAG17 Missense_Mutation p.E1250K 0.21 tolerated(0.21) benign(0.332) TCGA-UY-A9PF-01 1 11894401 11894401 C T CLCN6 Silent p.I545I 0.29 TCGA-UY-A9PF-01 1 1267075 1267077 CAA - TAS1R3 In_Frame_Del p.N85del 0.10 TCGA-UY-A9PF-01 1 145440988 145440988 C T TXNIP Nonsense_Mutation p.Q359* 0.20 TCGA-UY-A9PF-01 1 149398966 149398966 C T HIST2H3PS2 3'Flank 0.20 TCGA-UY-A9PF-01 1 152009453 152009453 G A S100A11 5'UTR 0.28 TCGA-UY-A9PF-01 1 152084960 152084960 C T TCHH Missense_Mutation p.E245K 0.33 unknown(0) TCGA-UY-A9PF-01 1 152187677 152187677 G A HRNR Missense_Mutation p.S2143L 0.03 unknown(0) TCGA-UY-A9PF-01 1 152287031 152287031 C T FLG Missense_Mutation p.E111K 0.27 benign(0.078) TCGA-UY-A9PF-01 1 152732542 152732542 C T KPRP Nonsense_Mutation p.Q160* 0.34 TCGA-UY-A9PF-01 1 153507274 153507274 C T S100A6 Missense_Mutation p.M57I 0.10 deleterious(0.01) benign(0.013) TCGA-UY-A9PF-01 1 154918222 154918222 A G PBXIP1 Missense_Mutation p.F643S 0.06 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 1 154988172 154988172 C T ZBTB7B Nonsense_Mutation p.Q380* 0.31 TCGA-UY-A9PF-01 1 155298023 155298023 C T RUSC1 Nonsense_Mutation p.Q833* 0.27 TCGA-UY-A9PF-01 1 156214585 156214585 C T PAQR6 Missense_Mutation p.E137K 0.18 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-UY-A9PF-01 1 156235632 156235632 G A SMG5 Missense_Mutation p.H599Y 0.28 deleterious(0.03) benign(0.129) TCGA-UY-A9PF-01 1 161284213 161284213 G A SDHC Silent p.L6L 0.28 TCGA-UY-A9PF-01 1 161495184 161495184 G A HSPA6 Missense_Mutation p.E246K 0.50 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-UY-A9PF-01 1 16256628 16256628 C T SPEN Missense_Mutation p.S1298F 0.29 possibly_damaging(0.613) TCGA-UY-A9PF-01 1 162722893 162722893 C T DDR2 Missense_Mutation p.R31C 0.28 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 1 16918352 16918352 C T NBPF1 Silent p.Q55Q 0.04 TCGA-UY-A9PF-01 1 16945705 16945705 G A RP5-1182A14.5 3'Flank 0.08 TCGA-UY-A9PF-01 1 17303634 17303634 C T MFAP2 Missense_Mutation p.V33I 0.29 tolerated_low_confidence(0.16) benign(0.015) TCGA-UY-A9PF-01 1 180904939 180904939 C T KIAA1614 Nonsense_Mutation p.Q632* 0.25 TCGA-UY-A9PF-01 1 19180772 19180772 C T TAS1R2 Missense_Mutation p.A398T 0.30 deleterious(0.03) possibly_damaging(0.511) TCGA-UY-A9PF-01 1 203134933 203134933 C T ADORA1 Missense_Mutation p.R296C 0.10 deleterious(0) probably_damaging(0.92) TCGA-UY-A9PF-01 1 205632462 205632462 C T SLC45A3 Missense_Mutation p.D153N 0.44 tolerated(0.17) benign(0.34) TCGA-UY-A9PF-01 1 206634958 206634958 C T SRGAP2 3'UTR 0.35 TCGA-UY-A9PF-01 1 215256642 215256642 G A KCNK2 5'UTR 0.32 TCGA-UY-A9PF-01 1 2160703 2160703 C T SKI Silent p.I166I 0.31 TCGA-UY-A9PF-01 1 216850553 216850553 G A ESRRG Nonsense_Mutation p.Q118* 0.17 TCGA-UY-A9PF-01 1 225700610 225700610 C T ENAH Missense_Mutation p.G443S 0.37 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 1 228596906 228596906 G A TRIM17 Missense_Mutation p.P284S 0.20 tolerated(0.17) probably_damaging(0.997) TCGA-UY-A9PF-01 1 229441108 229441108 C T RAB4A 3'UTR 0.23 TCGA-UY-A9PF-01 1 23695744 23695744 G A C1orf213 5'UTR 0.15 TCGA-UY-A9PF-01 1 237024569 237024569 C T MTR Silent p.L730L 0.29 TCGA-UY-A9PF-01 1 23763114 23763114 C T ASAP3 Missense_Mutation p.E504K 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-UY-A9PF-01 1 240656609 240656609 C T GREM2 Missense_Mutation p.S56N 0.32 deleterious(0.04) possibly_damaging(0.838) TCGA-UY-A9PF-01 1 245017704 245017704 T C HNRNPU 3'UTR 0.31 TCGA-UY-A9PF-01 1 246829053 246829053 C T CNST Missense_Mutation p.T675M 0.22 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 1 24687510 24687510 G C STPG1 Missense_Mutation p.F253L 0.29 tolerated(0.24) benign(0.204) TCGA-UY-A9PF-01 1 246899281 246899281 G C SCCPDH Missense_Mutation p.R103P 0.19 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PF-01 1 248458294 248458294 G T OR2T12 Missense_Mutation p.A196D 0.14 deleterious(0) possibly_damaging(0.808) TCGA-UY-A9PF-01 1 248789976 248789976 C T OR2T11 Missense_Mutation p.D152N 0.25 tolerated(0.08) possibly_damaging(0.874) TCGA-UY-A9PF-01 1 24932103 24932103 G A NCMAP Missense_Mutation p.M58I 0.17 deleterious(0) possibly_damaging(0.647) TCGA-UY-A9PF-01 1 27089463 27089463 G A ARID1A Splice_Site p.X807_splice 0.23 TCGA-UY-A9PF-01 1 27217514 27217514 G A GPATCH3 Missense_Mutation p.S522L 0.24 deleterious_low_confidence(0) benign(0.003) TCGA-UY-A9PF-01 1 27276594 27276594 G A C1orf172 Missense_Mutation p.S388L 0.15 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PF-01 1 29557392 29557392 C T MECR Silent p.R9R 0.27 TCGA-UY-A9PF-01 1 32782295 32782295 G A HDAC1 Missense_Mutation p.M64I 0.26 tolerated(0.15) benign(0.032) TCGA-UY-A9PF-01 1 34046400 34046400 G A CSMD2 Missense_Mutation p.S2449L 0.19 deleterious(0) probably_damaging(0.938) TCGA-UY-A9PF-01 1 36181255 36181255 G A C1orf216 Missense_Mutation p.S223F 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-UY-A9PF-01 1 36748279 36748279 C T THRAP3 Missense_Mutation p.R39C 0.34 tolerated_low_confidence(0.11) unknown(0) TCGA-UY-A9PF-01 1 38155466 38155466 C T C1orf109 Silent p.Q29Q 0.19 TCGA-UY-A9PF-01 1 39759229 39759229 G A MACF1 Missense_Mutation p.E703K 0.30 probably_damaging(0.979) TCGA-UY-A9PF-01 1 42922574 42922574 C T PPCS Missense_Mutation p.S113L 0.24 tolerated(0.18) benign(0.003) TCGA-UY-A9PF-01 1 43672541 43672541 G A WDR65 Missense_Mutation p.D565N 0.30 deleterious(0) possibly_damaging(0.811) TCGA-UY-A9PF-01 1 43831253 43831253 C T ELOVL1 Missense_Mutation p.E10K 0.18 tolerated(0.44) benign(0.012) TCGA-UY-A9PF-01 1 46657843 46657843 T A POMGNT1 Missense_Mutation p.E489V 0.08 probably_damaging(0.991) TCGA-UY-A9PF-01 1 47024297 47024297 G C MKNK1 Missense_Mutation p.L450V 0.14 tolerated(0.5) benign(0.046) TCGA-UY-A9PF-01 1 52280475 52280475 G A NRD1 Missense_Mutation p.L552F 0.26 deleterious(0.01) possibly_damaging(0.6) TCGA-UY-A9PF-01 1 55073615 55073615 G A ACOT11 Silent p.G501G 0.12 TCGA-UY-A9PF-01 1 55266587 55266587 C T TTC22 Missense_Mutation p.E84K 0.20 tolerated(0.55) benign(0.003) TCGA-UY-A9PF-01 1 55523819 55523819 G A PCSK9 Missense_Mutation p.E431K 0.37 tolerated(0.12) benign(0.216) TCGA-UY-A9PF-01 1 64059288 64059288 C T PGM1 Silent p.I43I 0.23 TCGA-UY-A9PF-01 1 64709893 64709893 C G UBE2U 3'UTR 0.17 TCGA-UY-A9PF-01 1 67148015 67148015 C T SGIP1 Silent p.P426P 0.32 TCGA-UY-A9PF-01 1 70877218 70877218 C T CTH Silent p.P40P 0.23 TCGA-UY-A9PF-01 1 76251959 76251959 G A RABGGTB Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0.04) benign(0.005) TCGA-UY-A9PF-01 1 84948649 84948649 G A RPF1 Missense_Mutation p.E113K 0.29 tolerated(0.07) benign(0.168) TCGA-UY-A9PF-01 1 880097 880097 G A NOC2L Silent p.L743L 0.47 TCGA-UY-A9PF-01 1 89846160 89846171 CTCAGGGAGGGA - GBP6 In_Frame_Del p.L281_G284del 0.17 TCGA-UY-A9PF-01 1 935152 935152 T C HES4 Missense_Mutation p.M68V 0.17 tolerated(0.07) possibly_damaging(0.705) TCGA-UY-A9PF-01 20 1352674 1352674 G A FKBP1A Intron 0.33 TCGA-UY-A9PF-01 20 20018060 20018060 T - CRNKL1 Frame_Shift_Del p.E763Kfs*12 0.22 TCGA-UY-A9PF-01 20 26084052 26084052 T C NCOR1P1 RNA 0.33 TCGA-UY-A9PF-01 20 34817273 34817273 G A EPB41L1 3'UTR 0.24 TCGA-UY-A9PF-01 20 44421333 44421333 G A DNTTIP1 Missense_Mutation p.M41I 0.32 deleterious_low_confidence(0.03) benign(0.39) TCGA-UY-A9PF-01 20 44592577 44592577 C T ZNF335 Silent p.E385E 0.24 TCGA-UY-A9PF-01 20 47865737 47865737 G A ZNFX1 Missense_Mutation p.S1275F 0.28 deleterious(0.02) possibly_damaging(0.878) TCGA-UY-A9PF-01 20 49575933 49575933 C G MOCS3 Missense_Mutation p.T185S 0.09 deleterious(0.03) possibly_damaging(0.811) TCGA-UY-A9PF-01 20 61809937 61809937 C T MIR124-3 RNA 0.33 TCGA-UY-A9PF-01 20 8705313 8705313 G A PLCB1 Missense_Mutation p.G531E 0.24 tolerated(0.09) benign(0.105) TCGA-UY-A9PF-01 21 17205839 17205839 G A USP25 Silent p.L722L 0.14 TCGA-UY-A9PF-01 21 30255333 30255333 A T N6AMT1 Silent p.S65S 0.13 TCGA-UY-A9PF-01 21 30714868 30714868 C T BACH1 Missense_Mutation p.S642L 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-UY-A9PF-01 21 40794745 40794745 C T LCA5L Intron 0.20 TCGA-UY-A9PF-01 21 43187136 43187136 G A RIPK4 Silent p.F22F 0.43 TCGA-UY-A9PF-01 21 46321490 46321490 C T ITGB2 Missense_Mutation p.E220K 0.23 tolerated(0.22) probably_damaging(0.954) TCGA-UY-A9PF-01 22 17443704 17443704 C T GAB4 Silent p.K548K 0.14 TCGA-UY-A9PF-01 22 30163499 30163499 C T UQCR10 Nonsense_Mutation p.Q38* 0.13 TCGA-UY-A9PF-01 22 31979905 31979905 G A SFI1 Silent p.Q431Q 0.28 TCGA-UY-A9PF-01 22 37640206 37640206 G A RAC2 5'UTR 0.17 TCGA-UY-A9PF-01 22 38695940 38695940 C T CSNK1E Silent p.K232K 0.16 TCGA-UY-A9PF-01 22 39104895 39104895 C T GTPBP1 Missense_Mutation p.R80W 0.08 deleterious(0) possibly_damaging(0.462) TCGA-UY-A9PF-01 22 40058835 40058835 G A CACNA1I Missense_Mutation p.E1143K 0.18 tolerated(0.57) benign(0.305) TCGA-UY-A9PF-01 2 100007088 100007088 G A EIF5B Missense_Mutation p.V890I 0.12 possibly_damaging(0.475) TCGA-UY-A9PF-01 2 101924945 101924945 C T RNF149 Missense_Mutation p.E36K 0.26 deleterious(0.02) probably_damaging(0.914) TCGA-UY-A9PF-01 2 113742533 113742533 C T IL36G Silent p.F139F 0.11 TCGA-UY-A9PF-01 2 130912763 130912763 G A SMPD4 Silent p.L492L 0.37 TCGA-UY-A9PF-01 2 170336037 170336037 G A BBS5 5'UTR 0.20 TCGA-UY-A9PF-01 2 20647740 20647740 G A RHOB Missense_Mutation p.E172K 0.37 deleterious(0.04) benign(0.233) TCGA-UY-A9PF-01 2 209353852 209353852 G A PTH2R Missense_Mutation p.E398K 0.22 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 2 215854152 215854152 G A ABCA12 Nonsense_Mutation p.Q1244* 0.27 TCGA-UY-A9PF-01 2 219894743 219894743 G A CCDC108 Missense_Mutation p.S450F 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-UY-A9PF-01 2 220037644 220037644 C T CNPPD1 Silent p.L299L 0.16 TCGA-UY-A9PF-01 2 227731931 227731931 A G RHBDD1 Missense_Mutation p.N155D 0.21 deleterious(0.05) possibly_damaging(0.823) TCGA-UY-A9PF-01 2 231742151 231742151 G A ITM2C Missense_Mutation p.E200K 0.33 deleterious(0) probably_damaging(0.992) TCGA-UY-A9PF-01 2 234652578 234652578 C A UGT1A10 Intron 0.26 TCGA-UY-A9PF-01 2 235404723 235404723 C T ARL4C Missense_Mutation p.E170K 0.25 deleterious(0) probably_damaging(0.951) TCGA-UY-A9PF-01 2 239170926 239170926 C T PER2 Missense_Mutation p.G405R 0.26 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 2 24920586 24920586 G A NCOA1 Missense_Mutation p.D290N 0.41 deleterious(0) probably_damaging(0.942) TCGA-UY-A9PF-01 2 28627027 28627027 C T FOSL2 Silent p.N52N 0.40 TCGA-UY-A9PF-01 2 37286069 37286069 C T HEATR5B Silent p.L637L 0.47 TCGA-UY-A9PF-01 2 39033714 39033714 G A DHX57 Missense_Mutation p.S1268L 0.47 deleterious(0) possibly_damaging(0.904) TCGA-UY-A9PF-01 2 43819159 43819159 G A THADA Silent p.L35L 0.38 TCGA-UY-A9PF-01 2 44053554 44053554 G A ABCG5 Silent p.L247L 0.46 TCGA-UY-A9PF-01 2 46851413 46851413 C A CRIPT 3'UTR 0.44 TCGA-UY-A9PF-01 2 55237267 55237267 G C RTN4 Intron 0.41 TCGA-UY-A9PF-01 2 69002359 69002359 C T ARHGAP25 Missense_Mutation p.S23L 0.48 deleterious(0) probably_damaging(0.995) TCGA-UY-A9PF-01 2 70315635 70315635 G A PCBP1 Missense_Mutation p.G254R 0.35 tolerated(0.09) benign(0.048) TCGA-UY-A9PF-01 2 70475553 70475553 C T TIA1 Missense_Mutation p.E4K 0.40 tolerated(0.09) benign(0.047) TCGA-UY-A9PF-01 2 73678941 73678941 G C ALMS1 Missense_Mutation p.E1762Q 0.39 probably_damaging(0.991) TCGA-UY-A9PF-01 2 75720593 75720593 C T EVA1A Silent p.E76E 0.40 TCGA-UY-A9PF-01 2 80782946 80782946 G T CTNNA2 Nonsense_Mutation p.E557* 0.12 TCGA-UY-A9PF-01 2 8822201 8822201 C G ID2 5'UTR 0.58 TCGA-UY-A9PF-01 2 99149927 99149927 G A INPP4A Nonsense_Mutation p.W80* 0.10 TCGA-UY-A9PF-01 3 112300023 112300023 C T SLC35A5 Silent p.F353F 0.27 TCGA-UY-A9PF-01 3 122277308 122277308 C T PARP9 Missense_Mutation p.G8R 0.06 deleterious(0.04) benign(0.048) TCGA-UY-A9PF-01 3 127771730 127771730 G A SEC61A1 Silent p.Q20Q 0.16 TCGA-UY-A9PF-01 3 129112124 129112124 C T SNORA7B 3'Flank 0.17 TCGA-UY-A9PF-01 3 132257125 132257125 G A DNAJC13 Silent p.%3D 0.23 TCGA-UY-A9PF-01 3 133306963 133306963 G C CDV3 3'UTR 0.28 TCGA-UY-A9PF-01 3 133941283 133941283 G A RYK Silent p.F109F 0.15 TCGA-UY-A9PF-01 3 137750045 137750045 G A CLDN18 3'UTR 0.21 TCGA-UY-A9PF-01 3 142413339 142413339 G A PLS1 Silent p.R402R 0.27 TCGA-UY-A9PF-01 3 148927057 148927057 G A CP Missense_Mutation p.S241L 0.26 tolerated(0.3) benign(0.003) TCGA-UY-A9PF-01 3 151101615 151101615 G A MED12L Missense_Mutation p.D1542N 0.28 deleterious(0) benign(0.334) TCGA-UY-A9PF-01 3 152880855 152880855 G A RAP2B Missense_Mutation p.E125K 0.35 tolerated(0.63) possibly_damaging(0.704) TCGA-UY-A9PF-01 3 157154650 157154650 C T PTX3 5'UTR 0.35 TCGA-UY-A9PF-01 3 157154698 157154698 G A PTX3 5'UTR 0.45 TCGA-UY-A9PF-01 3 160474243 160474243 G A PPM1L Silent p.V49V 0.31 TCGA-UY-A9PF-01 3 169824696 169824696 C T PHC3 Missense_Mutation p.E798K 0.24 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PF-01 3 182788853 182788853 C G MCCC1 Missense_Mutation p.R232P 0.06 deleterious(0) probably_damaging(0.979) TCGA-UY-A9PF-01 3 183683218 183683218 G A ABCC5 Silent p.L635L 0.26 TCGA-UY-A9PF-01 3 184035528 184035528 G T EIF4G1 Silent p.P123P 0.10 TCGA-UY-A9PF-01 3 184039844 184039844 T C EIF4G1 Missense_Mutation p.I498T 0.26 tolerated(0.83) benign(0) TCGA-UY-A9PF-01 3 184295195 184295195 G T EPHB3 Missense_Mutation p.W473C 0.36 deleterious(0.01) possibly_damaging(0.568) TCGA-UY-A9PF-01 3 184801060 184801060 G A C3orf70 Missense_Mutation p.S163F 0.28 tolerated_low_confidence(0.11) probably_damaging(0.983) TCGA-UY-A9PF-01 3 185198290 185198290 G T MAP3K13 Missense_Mutation p.K924N 0.09 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-UY-A9PF-01 3 188925348 188925348 C T TPRG1 Nonsense_Mutation p.Q59* 0.29 TCGA-UY-A9PF-01 3 196730708 196730708 C T MFI2 Intron 0.29 TCGA-UY-A9PF-01 3 27453238 27453238 T C SLC4A7 Missense_Mutation p.E545G 0.38 deleterious(0) benign(0.272) TCGA-UY-A9PF-01 3 29476272 29476272 C A RBMS3 Silent p.P38P 0.16 TCGA-UY-A9PF-01 3 3192572 3192572 C T CRBN Missense_Mutation p.D436N 0.25 tolerated_low_confidence(0.13) benign(0.001) TCGA-UY-A9PF-01 3 3192584 3192584 C T CRBN Missense_Mutation p.E432K 0.24 tolerated_low_confidence(0.1) benign(0.075) TCGA-UY-A9PF-01 3 38158313 38158313 C T DLEC1 Missense_Mutation p.S1371L 0.12 deleterious(0) possibly_damaging(0.73) TCGA-UY-A9PF-01 3 45052768 45052768 G C EXOSC7 Missense_Mutation p.Q271H 0.13 tolerated(0.18) benign(0.002) TCGA-UY-A9PF-01 3 45077285 45077285 G A CLEC3B Missense_Mutation p.E160K 0.39 deleterious(0.02) probably_damaging(0.947) TCGA-UY-A9PF-01 3 47162476 47162476 C A SETD2 Missense_Mutation p.W1217L 0.09 tolerated_low_confidence(0.66) benign(0.008) TCGA-UY-A9PF-01 3 47446544 47446544 G A PTPN23 Missense_Mutation p.E113K 0.23 unknown(0) TCGA-UY-A9PF-01 3 47890249 47890249 C T DHX30 Missense_Mutation p.S904F 0.16 deleterious(0) probably_damaging(0.979) TCGA-UY-A9PF-01 3 4825530 4825530 A G ITPR1 Missense_Mutation p.M2166V 0.14 deleterious(0.02) benign(0.045) TCGA-UY-A9PF-01 3 48474155 48474155 G A CCDC51 Missense_Mutation p.S300L 0.26 tolerated(0.42) benign(0.009) TCGA-UY-A9PF-01 3 48508421 48508421 G C TREX1 Missense_Mutation p.A178P 0.16 deleterious(0) probably_damaging(0.994) TCGA-UY-A9PF-01 3 48669190 48669190 G A SLC26A6 Silent p.G265G 0.24 TCGA-UY-A9PF-01 3 49282306 49282306 G A CCDC36 Intron 0.27 TCGA-UY-A9PF-01 3 51263094 51263094 G A DOCK3 Missense_Mutation p.D423N 0.29 deleterious(0.01) possibly_damaging(0.893) TCGA-UY-A9PF-01 3 51430789 51430789 C T RBM15B Silent p.L653L 0.29 TCGA-UY-A9PF-01 3 52003858 52003858 G A ABHD14B Intron 0.22 TCGA-UY-A9PF-01 3 57542935 57542935 T A PDE12 Missense_Mutation p.C277S 0.15 deleterious(0) benign(0.184) TCGA-UY-A9PF-01 3 8775572 8775572 G A CAV3 Missense_Mutation p.E4K 0.21 deleterious_low_confidence(0.03) benign(0.14) TCGA-UY-A9PF-01 3 88039979 88039979 C T HTR1F Missense_Mutation p.S27F 0.21 deleterious(0) probably_damaging(0.929) TCGA-UY-A9PF-01 3 88040239 88040239 C G HTR1F Missense_Mutation p.L114V 0.23 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 3 93781985 93781985 G A NSUN3 Intron 0.33 TCGA-UY-A9PF-01 3 9862077 9862077 C T TTLL3 Intron 0.33 TCGA-UY-A9PF-01 3 9959147 9959147 C T IL17RC Nonsense_Mutation p.Q50* 0.27 TCGA-UY-A9PF-01 4 111542361 111542361 C T PITX2 Missense_Mutation p.E124K 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-UY-A9PF-01 4 151773234 151773234 C T LRBA Missense_Mutation p.E1210K 0.43 tolerated_low_confidence(0.39) benign(0.002) TCGA-UY-A9PF-01 4 152682084 152682084 G A PET112 Silent p.F17F 0.11 TCGA-UY-A9PF-01 4 153247367 153247367 G A FBXW7 Nonsense_Mutation p.R479* 0.43 TCGA-UY-A9PF-01 4 154707061 154707061 C T SFRP2 Missense_Mutation p.D180N 0.44 deleterious(0.01) benign(0.111) TCGA-UY-A9PF-01 4 155241597 155241597 C G DCHS2 Missense_Mutation p.G1197R 0.53 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 4 3182304 3182304 G A HTT Missense_Mutation p.D1559N 0.14 probably_damaging(0.999) TCGA-UY-A9PF-01 4 3769772 3769772 G A ADRA2C 3'UTR 0.64 TCGA-UY-A9PF-01 4 38104643 38104643 G A TBC1D1 Missense_Mutation p.E808K 0.23 deleterious(0) possibly_damaging(0.715) TCGA-UY-A9PF-01 4 39471646 39471646 C T LIAS Missense_Mutation p.R249C 0.38 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 4 47559879 47559879 G T ATP10D Nonsense_Mutation p.E675* 0.10 TCGA-UY-A9PF-01 4 48096154 48096154 C T TXK Missense_Mutation p.E217K 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-UY-A9PF-01 4 48588676 48588676 G A FRYL Silent p.D570D 0.12 TCGA-UY-A9PF-01 4 55524120 55524120 C T KIT 5'UTR 0.25 TCGA-UY-A9PF-01 4 56319883 56319883 G C CLOCK Nonsense_Mutation p.S364* 0.23 TCGA-UY-A9PF-01 4 66231719 66231719 G A EPHA5 Nonsense_Mutation p.Q661* 0.16 TCGA-UY-A9PF-01 4 71201226 71201226 C T CABS1 Missense_Mutation p.S157L 0.26 tolerated(0.64) benign(0.001) TCGA-UY-A9PF-01 4 73171713 73171713 G T ADAMTS3 Missense_Mutation p.H751N 0.14 tolerated(0.16) benign(0.031) TCGA-UY-A9PF-01 4 74274473 74274473 G A ALB Missense_Mutation p.D145N 0.33 deleterious(0.01) benign(0.042) TCGA-UY-A9PF-01 4 74702932 74702932 G A CXCL6 Silent p.K85K 0.15 TCGA-UY-A9PF-01 4 75312445 75312445 G A AREG Missense_Mutation p.E86K 0.40 deleterious(0) probably_damaging(0.968) TCGA-UY-A9PF-01 4 780372 780372 C A CPLX1 Nonsense_Mutation p.E108* 0.14 TCGA-UY-A9PF-01 4 85617907 85617907 T A WDFY3 Missense_Mutation p.E2889V 0.18 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 4 87693965 87693965 G A PTPN13 Missense_Mutation p.G1740R 0.27 tolerated(0.53) benign(0.021) TCGA-UY-A9PF-01 4 88036065 88036065 G A AFF1 Missense_Mutation p.E694K 0.16 tolerated(0.81) unknown(0) TCGA-UY-A9PF-01 5 11022901 11022901 G A CTNND2 Silent p.I993I 0.15 TCGA-UY-A9PF-01 5 112214500 112214500 C T REEP5 Missense_Mutation p.E185K 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.648) TCGA-UY-A9PF-01 5 112227511 112227511 G A ZRSR1 Missense_Mutation p.E59K 0.16 tolerated(0.39) benign(0.292) TCGA-UY-A9PF-01 5 133909332 133909332 C G JADE2 Intron 0.14 TCGA-UY-A9PF-01 5 139217264 139217264 C T PSD2 Missense_Mutation p.R574C 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-UY-A9PF-01 5 139244747 139244747 C T NRG2 Intron 0.17 TCGA-UY-A9PF-01 5 139930464 139930464 C T SRA1 Missense_Mutation p.D178N 0.21 deleterious(0.02) benign(0.081) TCGA-UY-A9PF-01 5 139930497 139930497 C T SRA1 Splice_Site p.X167_splice 0.33 TCGA-UY-A9PF-01 5 139931610 139931610 C G SRA1 Missense_Mutation p.R116T 0.31 tolerated(0.63) benign(0.021) TCGA-UY-A9PF-01 5 141017939 141017939 G A RELL2 Silent p.S49S 0.35 TCGA-UY-A9PF-01 5 141244980 141244980 C T PCDH1 Missense_Mutation p.D306N 0.17 deleterious(0) probably_damaging(0.992) TCGA-UY-A9PF-01 5 145540010 145540022 GATTAACATCAGT - LARS Frame_Shift_Del p.T208Lfs*12 0.16 TCGA-UY-A9PF-01 5 150056332 150056332 C T MYOZ3 Silent p.F217F 0.31 TCGA-UY-A9PF-01 5 152870472 152870472 C T GRIA1 5'Flank 0.29 TCGA-UY-A9PF-01 5 159640784 159640784 G A FABP6 Silent p.R31R 0.33 TCGA-UY-A9PF-01 5 173317332 173317332 C T CPEB4 Missense_Mutation p.S199L 0.18 deleterious_low_confidence(0) benign(0.173) TCGA-UY-A9PF-01 5 175815914 175815914 C T HIGD2A Missense_Mutation p.P32S 0.19 tolerated(0.46) benign(0.007) TCGA-UY-A9PF-01 5 177656982 177656982 G C PHYKPL Silent p.T99T 0.17 TCGA-UY-A9PF-01 5 178413182 178413182 G A GRM6 Silent p.F691F 0.22 TCGA-UY-A9PF-01 5 19544092 19544092 C T CDH18 Missense_Mutation p.E426K 0.39 deleterious(0.01) benign(0.006) TCGA-UY-A9PF-01 5 40769548 40769548 T C PRKAA1 Missense_Mutation p.N204S 0.28 deleterious(0) possibly_damaging(0.55) TCGA-UY-A9PF-01 5 43659363 43659363 G A NNT Missense_Mutation p.E849K 0.10 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 5 52899319 52899319 C A NDUFS4 Missense_Mutation p.Q46K 0.33 tolerated(0.33) benign(0.001) TCGA-UY-A9PF-01 5 55110737 55110737 A C DDX4 Missense_Mutation p.E575A 0.16 tolerated(0.08) probably_damaging(0.999) TCGA-UY-A9PF-01 5 59940679 59940679 T A DEPDC1B Missense_Mutation p.D201V 0.14 tolerated(0.11) benign(0.004) TCGA-UY-A9PF-01 5 63510163 63510163 C T RNF180 Missense_Mutation p.S337L 0.25 tolerated(0.06) benign(0.001) TCGA-UY-A9PF-01 5 63510232 63510232 C T RNF180 Missense_Mutation p.S360L 0.17 tolerated(0.08) benign(0.004) TCGA-UY-A9PF-01 5 6751220 6751220 C T PAPD7 Silent p.L393L 0.26 TCGA-UY-A9PF-01 5 68651573 68651573 C T TAF9 Missense_Mutation p.D77N 0.26 deleterious(0.02) probably_damaging(0.946) TCGA-UY-A9PF-01 5 78587101 78587101 G A JMY Silent p.R502R 0.20 TCGA-UY-A9PF-01 6 118790427 118790427 G A CEP85L Nonsense_Mutation p.Q691* 0.12 TCGA-UY-A9PF-01 6 119238786 119238786 C T MCM9 Missense_Mutation p.E282K 0.16 tolerated(0.09) benign(0.207) TCGA-UY-A9PF-01 6 131571673 131571673 G A AKAP7 Intron 0.16 TCGA-UY-A9PF-01 6 139694261 139694261 C T CITED2 3'UTR 0.17 TCGA-UY-A9PF-01 6 146708083 146708083 G A GRM1 Missense_Mutation p.E554K 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-UY-A9PF-01 6 148869602 148869602 C A SASH1 Missense_Mutation p.Q1218K 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.726) TCGA-UY-A9PF-01 6 154732187 154732187 A G CNKSR3 Missense_Mutation p.F387S 0.21 tolerated(0.08) benign(0.02) TCGA-UY-A9PF-01 6 159185640 159185640 G A SYTL3 3'UTR 0.35 TCGA-UY-A9PF-01 6 16147051 16147051 G C MYLIP 3'UTR 0.35 TCGA-UY-A9PF-01 6 161491817 161491817 G A MAP3K4 Missense_Mutation p.E629K 0.14 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 6 168226420 168226420 G A MLLT4 5'Flank 0.21 TCGA-UY-A9PF-01 6 170871168 170871168 C T TBP Missense_Mutation p.S115L 0.13 tolerated_low_confidence(0.11) benign(0.307) TCGA-UY-A9PF-01 6 21596103 21596103 C T SOX4 Silent p.F446F 0.31 TCGA-UY-A9PF-01 6 25868646 25868646 C T SLC17A3 Intron 0.40 TCGA-UY-A9PF-01 6 2623700 2623700 C T C6orf195 Silent p.Q119Q 0.16 TCGA-UY-A9PF-01 6 26598534 26598534 C T ABT1 Silent p.L160L 0.20 TCGA-UY-A9PF-01 6 2948930 2948930 C T SERPINB6 Missense_Mutation p.E245K 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-UY-A9PF-01 6 30569770 30569770 G C PPP1R10 Missense_Mutation p.P886A 0.47 tolerated_low_confidence(0.11) unknown(0) TCGA-UY-A9PF-01 6 30569794 30569794 G A PPP1R10 Missense_Mutation p.H878Y 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-UY-A9PF-01 6 30569827 30569827 G A PPP1R10 Missense_Mutation p.H867Y 0.38 deleterious_low_confidence(0.02) unknown(0) TCGA-UY-A9PF-01 6 30569834 30569834 G A PPP1R10 Silent p.V864V 0.32 TCGA-UY-A9PF-01 6 30569842 30569842 G C PPP1R10 Missense_Mutation p.H862D 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-UY-A9PF-01 6 30593592 30593592 G A MRPS18B 3'UTR 0.25 TCGA-UY-A9PF-01 6 30882629 30882629 C T VARS2 Missense_Mutation p.L36F 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-UY-A9PF-01 6 31118822 31118822 C A CCHCR1 Silent p.L293L 0.19 TCGA-UY-A9PF-01 6 31508228 31508228 C T DDX39B Missense_Mutation p.E28K 0.12 tolerated(0.64) benign(0.001) TCGA-UY-A9PF-01 6 31590481 31590481 G A PRRC2A 5'UTR 0.37 TCGA-UY-A9PF-01 6 31797431 31797431 G A HSPA1B Silent p.K568K 0.12 TCGA-UY-A9PF-01 6 32903329 32903329 C A HLA-DMB Silent p.R241R 0.18 TCGA-UY-A9PF-01 6 32903401 32903401 C T HLA-DMB Silent p.L217L 0.12 TCGA-UY-A9PF-01 6 33245227 33245227 C G B3GALT4 Missense_Mutation p.L11V 0.43 tolerated(0.18) benign(0.184) TCGA-UY-A9PF-01 6 34256701 34256701 C G NUDT3 Missense_Mutation p.K116N 0.08 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PF-01 6 35554834 35554834 C T FKBP5 Missense_Mutation p.E273K 0.37 deleterious(0.03) benign(0.315) TCGA-UY-A9PF-01 6 38957812 38957812 G C DNAH8 Missense_Mutation p.E4143Q 0.32 benign(0.026) TCGA-UY-A9PF-01 6 39874708 39874708 G A MOCS1 3'UTR 0.39 TCGA-UY-A9PF-01 6 41908762 41908762 C T CCND3 Intron 0.44 TCGA-UY-A9PF-01 6 43152208 43152208 G C CUL9 Missense_Mutation p.G54R 0.20 deleterious(0) benign(0.041) TCGA-UY-A9PF-01 6 43323754 43323754 C T ZNF318 Missense_Mutation p.E440K 0.14 benign(0.041) TCGA-UY-A9PF-01 6 47976712 47976712 G T PTCHD4 Missense_Mutation p.L189I 0.22 tolerated(0.41) benign(0.014) TCGA-UY-A9PF-01 6 52993732 52993732 C T GCM1 Missense_Mutation p.E195K 0.11 tolerated(0.2) benign(0.039) TCGA-UY-A9PF-01 6 592517 592517 G C EXOC2 Missense_Mutation p.L382V 0.10 tolerated(0.19) possibly_damaging(0.899) TCGA-UY-A9PF-01 6 64394632 64394632 G A PHF3 Missense_Mutation p.E337K 0.15 tolerated_low_confidence(0.25) benign(0.002) TCGA-UY-A9PF-01 6 7585151 7585151 C T DSP Silent p.L2552L 0.23 TCGA-UY-A9PF-01 6 82459869 82459869 C T FAM46A Missense_Mutation p.G291E 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-UY-A9PF-01 6 89827602 89827602 G A SRSF12 Missense_Mutation p.S2F 0.30 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-UY-A9PF-01 6 90340422 90340422 C T ANKRD6 Missense_Mutation p.P628L 0.26 tolerated(0.24) benign(0) TCGA-UY-A9PF-01 7 101256659 101256659 G A MYL10 3'UTR 0.27 TCGA-UY-A9PF-01 7 102939128 102939128 G A PMPCB Silent p.S71S 0.27 TCGA-UY-A9PF-01 7 103033494 103033494 G A SLC26A5 Missense_Mutation p.P331S 0.30 deleterious(0.01) probably_damaging(1) TCGA-UY-A9PF-01 7 104719391 104719391 C T KMT2E Missense_Mutation p.S410F 0.27 deleterious(0) possibly_damaging(0.788) TCGA-UY-A9PF-01 7 106508330 106508330 G A PIK3CG Silent p.E108E 0.33 TCGA-UY-A9PF-01 7 13940453 13940453 A G ETV1 Silent p.R374R 0.38 TCGA-UY-A9PF-01 7 140156619 140156619 C T MKRN1 Silent p.V273V 0.33 TCGA-UY-A9PF-01 7 147869408 147869408 G A CNTNAP2 Missense_Mutation p.E950K 0.25 deleterious(0.02) benign(0.43) TCGA-UY-A9PF-01 7 150713864 150713864 G A ATG9B Missense_Mutation p.P778S 0.27 tolerated(0.26) possibly_damaging(0.628) TCGA-UY-A9PF-01 7 151873284 151873284 G A KMT2C Missense_Mutation p.P3085L 0.23 probably_damaging(0.999) TCGA-UY-A9PF-01 7 1608853 1608853 C T PSMG3 Silent p.K41K 0.25 TCGA-UY-A9PF-01 7 19156468 19156468 G A TWIST1 Silent p.L159L 0.23 TCGA-UY-A9PF-01 7 21940685 21940685 G A DNAH11 Missense_Mutation p.C4462Y 0.08 benign(0.212) TCGA-UY-A9PF-01 7 24324971 24324971 G A NPY Missense_Mutation p.E38K 0.18 deleterious(0.03) benign(0.169) TCGA-UY-A9PF-01 7 26224648 26224648 G A NFE2L3 Missense_Mutation p.E444K 0.23 deleterious(0) possibly_damaging(0.804) TCGA-UY-A9PF-01 7 2646795 2646795 A T IQCE Missense_Mutation p.R635W 0.08 tolerated(0.12) benign(0.143) TCGA-UY-A9PF-01 7 2740308 2740308 G A AMZ1 Missense_Mutation p.E75K 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-UY-A9PF-01 7 2987377 2987377 C T CARD11 Missense_Mutation p.E18K 0.21 deleterious(0.01) benign(0.434) TCGA-UY-A9PF-01 7 32908953 32908953 C T KBTBD2 3'UTR 0.22 TCGA-UY-A9PF-01 7 35923565 35923565 G A SEPT7 Missense_Mutation p.R264K 0.18 deleterious(0) possibly_damaging(0.689) TCGA-UY-A9PF-01 7 37960490 37960490 C T EPDR1 5'UTR 0.20 TCGA-UY-A9PF-01 7 44804556 44804556 G A ZMIZ2 Missense_Mutation p.E649K 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-UY-A9PF-01 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.26 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-UY-A9PF-01 7 56149890 56149890 C T PHKG1 Missense_Mutation p.E234K 0.18 tolerated(0.12) benign(0.003) TCGA-UY-A9PF-01 7 66774084 66774084 G A STAG3L4 RNA 0.34 TCGA-UY-A9PF-01 7 73246019 73246019 C T CLDN4 Missense_Mutation p.S163L 0.33 deleterious(0.03) possibly_damaging(0.813) TCGA-UY-A9PF-01 7 92219636 92219636 G A FAM133B 5'UTR 0.24 TCGA-UY-A9PF-01 7 99699291 99699302 GGCAGGCCCGAC - AP4M1 5'UTR 0.09 TCGA-UY-A9PF-01 8 104447996 104447996 C A DCAF13 Missense_Mutation p.P462T 0.52 tolerated(0.1) benign(0.099) TCGA-UY-A9PF-01 8 107718740 107718740 G A OXR1 Missense_Mutation p.E332K 0.32 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 8 118159373 118159373 C T SLC30A8 Silent p.F84F 0.51 TCGA-UY-A9PF-01 8 120844796 120844796 C T TAF2 Silent p.L3L 0.16 TCGA-UY-A9PF-01 8 133894153 133894153 C T TG Silent p.F228F 0.30 TCGA-UY-A9PF-01 8 139767443 139767443 C T COL22A1 Missense_Mutation p.G663E 0.27 unknown(0) TCGA-UY-A9PF-01 8 144811389 144811389 C T FAM83H Missense_Mutation p.M184I 0.25 tolerated(0.08) benign(0.17) TCGA-UY-A9PF-01 8 144894477 144894477 C T SCRIB Missense_Mutation p.E289K 0.18 possibly_damaging(0.843) TCGA-UY-A9PF-01 8 145268133 145268133 C G MROH1 Intron 0.33 TCGA-UY-A9PF-01 8 145690194 145690194 C T CYHR1 Missense_Mutation p.E31K 0.24 deleterious_low_confidence(0.03) benign(0) TCGA-UY-A9PF-01 8 145730191 145730191 G A GPT Missense_Mutation p.S97N 0.23 tolerated(0.16) benign(0.008) TCGA-UY-A9PF-01 8 30889906 30889906 C T PURG Silent p.L131L 0.31 TCGA-UY-A9PF-01 8 33354170 33354170 C T MAK16 Missense_Mutation p.H184Y 0.20 tolerated(0.1) benign(0.005) TCGA-UY-A9PF-01 8 38688672 38688672 G A TACC1 Missense_Mutation p.E564K 0.22 tolerated(0.1) benign(0.196) TCGA-UY-A9PF-01 8 48748973 48748973 G A PRKDC Missense_Mutation p.S2625L 0.23 benign(0.012) TCGA-UY-A9PF-01 8 67796171 67796171 G A MCMDC2 Missense_Mutation p.E339K 0.26 tolerated(0.06) benign(0.005) TCGA-UY-A9PF-01 8 73849193 73849193 C G KCNB2 Missense_Mutation p.L535V 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-UY-A9PF-01 8 73849293 73849293 C T KCNB2 Missense_Mutation p.S568F 0.09 tolerated_low_confidence(0.07) benign(0.005) TCGA-UY-A9PF-01 8 73849399 73849399 C T KCNB2 Silent p.I603I 0.14 TCGA-UY-A9PF-01 8 81599686 81599686 G A ZNF704 Silent p.L111L 0.42 TCGA-UY-A9PF-01 8 99608292 99608292 C T STK3 Missense_Mutation p.E292K 0.08 tolerated(0.08) benign(0.33) TCGA-UY-A9PF-01 9 100459567 100459567 G C XPA Missense_Mutation p.A3G 0.14 tolerated_low_confidence(0.25) unknown(0) TCGA-UY-A9PF-01 9 109685857 109685857 G A ZNF462 Missense_Mutation p.E65K 0.11 benign(0.292) TCGA-UY-A9PF-01 9 115598580 115598580 G A SNX30 Silent p.L235L 0.19 TCGA-UY-A9PF-01 9 116130661 116130661 C T BSPRY Missense_Mutation p.S227L 0.11 tolerated(0.12) benign(0.101) TCGA-UY-A9PF-01 9 128509835 128509835 G A PBX3 Missense_Mutation p.E35K 0.50 tolerated_low_confidence(0.35) benign(0.004) TCGA-UY-A9PF-01 9 134072738 134072738 G A NUP214 Missense_Mutation p.G1286E 0.26 possibly_damaging(0.566) TCGA-UY-A9PF-01 9 135203489 135203489 C T SETX Missense_Mutation p.E1166K 0.31 tolerated(0.5) benign(0.006) TCGA-UY-A9PF-01 9 136217340 136217340 C T RPL7A Intron 0.13 TCGA-UY-A9PF-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.29 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 9 139297290 139297290 T G SDCCAG3 Missense_Mutation p.K420Q 0.09 tolerated(0.1) benign(0.426) TCGA-UY-A9PF-01 9 139750562 139750562 G A MAMDC4 Missense_Mutation p.E561K 0.07 tolerated(0.4) benign(0.057) TCGA-UY-A9PF-01 9 140289813 140289813 C T EXD3 5'UTR 0.10 TCGA-UY-A9PF-01 9 21334735 21334735 G A KLHL9 Nonsense_Mutation p.Q42* 0.27 TCGA-UY-A9PF-01 9 2646528 2646528 C T VLDLR Missense_Mutation p.S560F 0.17 deleterious(0) probably_damaging(0.968) TCGA-UY-A9PF-01 9 33290577 33290577 G A NFX1 Missense_Mutation p.E3K 0.11 deleterious_low_confidence(0.05) benign(0.059) TCGA-UY-A9PF-01 9 33469525 33469525 C T NOL6 Silent p.L233L 0.18 TCGA-UY-A9PF-01 9 336602 336602 C G DOCK8 Missense_Mutation p.R436G 0.17 deleterious(0.01) benign(0.106) TCGA-UY-A9PF-01 9 33996301 33996301 C T UBAP2 Missense_Mutation p.E70K 0.19 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 9 34648975 34648975 G A GALT Intron 0.24 TCGA-UY-A9PF-01 9 35869810 35869810 C T OR13J1 Missense_Mutation p.D197N 0.33 deleterious(0.01) benign(0.109) TCGA-UY-A9PF-01 9 67952011 67952011 G A ANKRD20A1 Missense_Mutation p.G325E 0.12 tolerated(0.27) probably_damaging(0.931) TCGA-UY-A9PF-01 9 72912924 72912924 G A SMC5 Missense_Mutation p.E366K 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-UY-A9PF-01 9 73152267 73152267 C T TRPM3 Missense_Mutation p.M1242I 0.24 tolerated(0.75) possibly_damaging(0.501) TCGA-UY-A9PF-01 9 84606579 84606579 C G SPATA31D1 Silent p.L398L 0.15 TCGA-UY-A9PF-01 9 87342636 87342636 G A NTRK2 Silent p.V307V 0.24 TCGA-UY-A9PF-01 9 95076916 95076916 G T NOL8 Missense_Mutation p.S664Y 0.19 tolerated(0.15) possibly_damaging(0.655) TCGA-UY-A9PF-01 9 95480191 95480191 C T BICD2 Missense_Mutation p.E716K 0.11 deleterious(0) probably_damaging(0.913) TCGA-UY-A9PF-01 9 96080372 96080372 C T WNK2 3'UTR 0.36 TCGA-UY-A9PF-01 9 96847648 96847648 G A PTPDC1 Silent p.E118E 0.13 TCGA-UY-A9PF-01 9 98232117 98232117 C T PTCH1 Missense_Mutation p.D609N 0.16 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 9 99711864 99711864 G C HIATL2 Missense_Mutation p.P123R 0.11 deleterious(0) probably_damaging(1) TCGA-UY-A9PF-01 X 10047804 10047804 G C WWC3 Missense_Mutation p.E113Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PF-01 X 114869259 114869259 G A PLS3 Missense_Mutation p.E217K 0.38 tolerated(0.16) benign(0.026) TCGA-UY-A9PF-01 X 122756958 122756958 G A THOC2 Missense_Mutation p.T1227I 0.16 tolerated(0.14) benign(0.07) TCGA-UY-A9PF-01 X 122866822 122866822 C T THOC2 Silent p.E17E 0.36 TCGA-UY-A9PF-01 X 129206342 129206342 G A ELF4 Silent p.L131L 0.64 TCGA-UY-A9PF-01 X 133511769 133511769 C G PHF6 Missense_Mutation p.A41G 0.39 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PF-01 X 44922824 44922830 GCCCTGG - KDM6A Frame_Shift_Del p.P563Sfs*28 0.62 TCGA-UY-A9PF-01 X 47104477 47104477 G A USP11 Missense_Mutation p.E760K 0.70 tolerated(0.15) probably_damaging(0.952) TCGA-UY-A9PF-01 X 48755788 48755788 C T PQBP1 5'UTR 0.72 TCGA-UY-A9PF-01 X 52673653 52673655 CAT - SSX7 3'UTR 0.39 TCGA-UY-A9PF-01 X 66765865 66765865 T G AR Missense_Mutation p.S293A 0.46 tolerated_low_confidence(0.07) benign(0.005) TCGA-UY-A9PF-01 X 70338701 70338701 G A MED12 Missense_Mutation p.E33K 0.38 benign(0.223) TCGA-UY-A9PF-01 X 70522298 70522298 C A ITGB1BP2 Missense_Mutation p.P70H 0.39 deleterious(0.01) possibly_damaging(0.887) TCGA-UY-A9PH-01 10 102566244 102566244 G A PAX2 Missense_Mutation p.R248Q 0.28 deleterious(0.03) probably_damaging(0.98) TCGA-UY-A9PH-01 10 102763275 102763275 G A LZTS2 Silent p.K140K 0.28 TCGA-UY-A9PH-01 10 104632204 104632204 G T AS3MT Splice_Site p.X57_splice 0.24 TCGA-UY-A9PH-01 10 104679043 104679043 C G CNNM2 Missense_Mutation p.S269W 0.30 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 10 104816706 104816706 C T CNNM2 Silent p.F686F 0.15 TCGA-UY-A9PH-01 10 106401696 106401696 C A SORCS3 Nonsense_Mutation p.S204* 0.40 TCGA-UY-A9PH-01 10 112341725 112341725 G C SMC3 Missense_Mutation p.E198Q 0.31 deleterious(0.01) possibly_damaging(0.796) TCGA-UY-A9PH-01 10 115609123 115609123 C G DCLRE1A Missense_Mutation p.E581Q 0.12 deleterious(0.04) benign(0.045) TCGA-UY-A9PH-01 10 37441047 37441047 G A ANKRD30A Missense_Mutation p.E513K 0.16 tolerated(0.21) possibly_damaging(0.636) TCGA-UY-A9PH-01 10 48388258 48388258 C T RBP3 Missense_Mutation p.G874R 0.38 deleterious(0) probably_damaging(0.989) TCGA-UY-A9PH-01 10 49400847 49400847 G C FRMPD2 Nonsense_Mutation p.S682* 0.24 TCGA-UY-A9PH-01 10 63188709 63188709 C A TMEM26 Nonsense_Mutation p.E194* 0.16 TCGA-UY-A9PH-01 10 69716710 69716710 G C HERC4 Missense_Mutation p.I658M 0.18 deleterious(0.04) benign(0.018) TCGA-UY-A9PH-01 10 73046618 73046618 T G UNC5B Missense_Mutation p.I242S 0.15 deleterious(0) possibly_damaging(0.474) TCGA-UY-A9PH-01 10 75290072 75290072 G A USP54 Missense_Mutation p.R553C 0.25 deleterious(0) possibly_damaging(0.513) TCGA-UY-A9PH-01 10 85903753 85903753 G A GHITM Missense_Mutation p.D78N 0.12 tolerated(0.11) benign(0.103) TCGA-UY-A9PH-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.12 TCGA-UY-A9PH-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.39 TCGA-UY-A9PH-01 11 102667764 102667764 C T MMP1 Missense_Mutation p.M160I 0.17 deleterious(0.02) benign(0.051) TCGA-UY-A9PH-01 11 108114803 108114803 C G ATM Missense_Mutation p.S207C 0.35 tolerated(0.11) possibly_damaging(0.572) TCGA-UY-A9PH-01 11 118984802 118984802 C G C2CD2L Missense_Mutation p.Q547E 0.47 tolerated(0.36) benign(0.279) TCGA-UY-A9PH-01 11 20136252 20136252 G A NAV2 Missense_Mutation p.E2418K 0.31 deleterious(0.01) probably_damaging(0.983) TCGA-UY-A9PH-01 11 30034044 30034044 G C KCNA4 Missense_Mutation p.S61C 0.48 tolerated_low_confidence(0.09) unknown(0) TCGA-UY-A9PH-01 11 30942385 30942385 T C DCDC1 Silent p.E1077E 0.35 TCGA-UY-A9PH-01 11 33612854 33612854 G A KIAA1549L Silent p.V1249V 0.16 TCGA-UY-A9PH-01 11 47440362 47440362 G C PSMC3 3'UTR 0.38 TCGA-UY-A9PH-01 11 57576777 57576781 TCTGC - CTNND1 Frame_Shift_Del p.L759Rfs*12 0.24 TCGA-UY-A9PH-01 11 57886324 57886324 A G OR9I1 Missense_Mutation p.V198A 0.14 tolerated(0.06) benign(0.007) TCGA-UY-A9PH-01 11 62334357 62334357 C T EEF1G Missense_Mutation p.E260K 0.21 tolerated(0.37) benign(0.005) TCGA-UY-A9PH-01 11 64323423 64323423 C T SLC22A11 5'UTR 0.17 TCGA-UY-A9PH-01 11 65661499 65661499 C A FOSL1 Missense_Mutation p.D131Y 0.60 deleterious(0) probably_damaging(0.997) TCGA-UY-A9PH-01 11 67265445 67265445 G C PITPNM1 Silent p.L575L 0.17 TCGA-UY-A9PH-01 11 67266470 67266470 G A PITPNM1 Missense_Mutation p.P392S 0.19 tolerated(0.81) benign(0.001) TCGA-UY-A9PH-01 11 68560835 68560835 G A CPT1A Silent p.S305S 0.08 TCGA-UY-A9PH-01 11 74419432 74419432 C T CHRDL2 Silent p.Q147Q 0.36 TCGA-UY-A9PH-01 11 74422024 74422024 G A CHRDL2 Missense_Mutation p.P101L 0.08 deleterious(0.02) probably_damaging(1) TCGA-UY-A9PH-01 11 96116562 96116562 C T CCDC82 Missense_Mutation p.E288K 0.49 tolerated(0.1) probably_damaging(0.98) TCGA-UY-A9PH-01 12 101505356 101505356 T C ANO4 Missense_Mutation p.I738T 0.08 deleterious(0) probably_damaging(0.925) TCGA-UY-A9PH-01 12 10339113 10339113 G A TMEM52B Missense_Mutation p.D58N 0.28 tolerated(0.28) benign(0.041) TCGA-UY-A9PH-01 12 113354534 113354534 C T OAS1 Missense_Mutation p.T292M 0.22 deleterious(0.03) possibly_damaging(0.548) TCGA-UY-A9PH-01 12 123472852 123472852 C T PITPNM2 Missense_Mutation p.E976K 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-UY-A9PH-01 12 123472892 123472892 C T PITPNM2 Missense_Mutation p.M962I 0.19 tolerated(0.26) probably_damaging(0.985) TCGA-UY-A9PH-01 12 123875224 123875224 G A SETD8 Silent p.P60P 0.18 TCGA-UY-A9PH-01 12 14849441 14849441 C G GUCY2C 5'UTR 0.29 TCGA-UY-A9PH-01 12 30878929 30878929 G C CAPRIN2 Missense_Mutation p.Q626E 0.39 tolerated(0.07) benign(0.046) TCGA-UY-A9PH-01 12 46298716 46298716 G A ARID2 Splice_Site p.X1788_splice 0.09 TCGA-UY-A9PH-01 12 47472094 47472094 A G AMIGO2 Missense_Mutation p.V231A 0.18 tolerated(0.51) benign(0.063) TCGA-UY-A9PH-01 12 49447070 49447070 C T KMT2D Missense_Mutation p.E292K 0.13 unknown(0) TCGA-UY-A9PH-01 12 50236697 50236697 G A BCDIN3D Silent p.L58L 0.12 TCGA-UY-A9PH-01 12 52652142 52652142 G A KRT121P RNA 0.56 TCGA-UY-A9PH-01 12 56487891 56487891 G C ERBB3 Missense_Mutation p.R541P 0.07 deleterious(0.01) possibly_damaging(0.678) TCGA-UY-A9PH-01 12 56488222 56488222 G C ERBB3 Missense_Mutation p.D581H 0.21 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 12 6981895 6981895 G C SPSB2 Missense_Mutation p.I57M 0.43 deleterious(0.03) benign(0.302) TCGA-UY-A9PH-01 12 69968430 69968430 G C FRS2 Missense_Mutation p.E408Q 0.20 tolerated(0.34) benign(0.399) TCGA-UY-A9PH-01 12 69968496 69968496 G C FRS2 Missense_Mutation p.E430Q 0.12 tolerated(0.17) benign(0.03) TCGA-UY-A9PH-01 12 98938017 98938017 C T TMPO Nonsense_Mutation p.Q225* 0.13 TCGA-UY-A9PH-01 12 99038473 99038473 C G IKBIP Missense_Mutation p.E3Q 0.23 deleterious(0.02) possibly_damaging(0.753) TCGA-UY-A9PH-01 13 21732131 21732131 G A SKA3 Missense_Mutation p.S350F 0.14 deleterious(0) probably_damaging(0.982) TCGA-UY-A9PH-01 13 21732242 21732242 G C SKA3 Nonsense_Mutation p.S313* 0.08 TCGA-UY-A9PH-01 13 25881975 25881975 C T NUPL1 Missense_Mutation p.L47F 0.28 tolerated(0.07) probably_damaging(0.994) TCGA-UY-A9PH-01 13 26923215 26923215 C G CDK8 Missense_Mutation p.R71G 0.27 deleterious(0) probably_damaging(0.983) TCGA-UY-A9PH-01 13 39358842 39358842 G C FREM2 Missense_Mutation p.E1972D 0.23 deleterious(0) probably_damaging(0.984) TCGA-UY-A9PH-01 13 41706726 41706726 G A KBTBD6 5'UTR 0.39 TCGA-UY-A9PH-01 13 42303748 42303748 G A VWA8 Silent p.V856V 0.29 TCGA-UY-A9PH-01 13 52531671 52531671 C T ATP7B Missense_Mutation p.E810K 0.11 tolerated(0.3) benign(0.023) TCGA-UY-A9PH-01 13 61987371 61987371 C G PCDH20 Silent p.V287V 0.17 TCGA-UY-A9PH-01 13 97999220 97999220 C T MBNL2 Missense_Mutation p.H235Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 14 104474764 104474764 G A TDRD9 Nonsense_Mutation p.W689* 0.32 TCGA-UY-A9PH-01 14 25043980 25043980 C T CTSG Silent p.Q80Q 0.40 TCGA-UY-A9PH-01 14 61997290 61997290 G C RP11-47I22.4 Missense_Mutation p.D85H 0.42 deleterious(0) possibly_damaging(0.877) TCGA-UY-A9PH-01 14 74516507 74516507 C G CCDC176 Missense_Mutation p.L299V 0.31 tolerated(0.06) probably_damaging(0.919) TCGA-UY-A9PH-01 15 101853618 101853618 C T PCSK6 Missense_Mutation p.E887K 0.15 deleterious(0.04) benign(0.287) TCGA-UY-A9PH-01 15 25302012 25302012 G A SNORD116-3 RNA 0.07 TCGA-UY-A9PH-01 15 25936900 25936900 C G ATP10A Missense_Mutation p.D1043H 0.31 deleterious(0) benign(0.105) TCGA-UY-A9PH-01 15 25969102 25969102 C T ATP10A Missense_Mutation p.G349E 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-UY-A9PH-01 15 35210538 35210538 C A AQR Missense_Mutation p.L421F 0.25 deleterious(0.03) benign(0.007) TCGA-UY-A9PH-01 15 41347448 41347448 C T INO80 Missense_Mutation p.E729K 0.12 deleterious(0) probably_damaging(0.91) TCGA-UY-A9PH-01 15 41362667 41362667 C T INO80 Missense_Mutation p.E562K 0.19 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 15 51012139 51012139 G A SPPL2A Nonsense_Mutation p.Q496* 0.22 TCGA-UY-A9PH-01 15 72193558 72193558 G C MYO9A Missense_Mutation p.L1042V 0.12 tolerated(0.09) benign(0.015) TCGA-UY-A9PH-01 15 72700197 72700197 G C TMEM202 Missense_Mutation p.R262T 0.15 tolerated(0.44) benign(0.074) TCGA-UY-A9PH-01 15 74239478 74239478 G A LOXL1 Missense_Mutation p.E474K 0.15 deleterious(0) probably_damaging(0.992) TCGA-UY-A9PH-01 15 75182954 75182954 G A MPI Missense_Mutation p.D35N 0.32 tolerated(0.43) benign(0.208) TCGA-UY-A9PH-01 15 86278844 86278844 G A AKAP13 Missense_Mutation p.D2503N 0.16 deleterious(0.02) benign(0.341) TCGA-UY-A9PH-01 15 90903739 90903739 C T ZNF774 Nonsense_Mutation p.Q226* 0.16 TCGA-UY-A9PH-01 15 91432632 91432632 C T FES Silent p.I255I 0.12 TCGA-UY-A9PH-01 16 21209161 21209161 G T ZP2 Nonsense_Mutation p.S674* 0.16 TCGA-UY-A9PH-01 16 2328306 2328306 G A ABCA3 Silent p.I1567I 0.34 TCGA-UY-A9PH-01 16 27761441 27761441 C T KIAA0556 Missense_Mutation p.R1054W 0.18 deleterious(0) possibly_damaging(0.663) TCGA-UY-A9PH-01 16 2812606 2812606 C T SRRM2 Missense_Mutation p.R693W 0.16 unknown(0) TCGA-UY-A9PH-01 16 29853396 29853396 G A MVP Missense_Mutation p.D533N 0.16 deleterious(0) possibly_damaging(0.85) TCGA-UY-A9PH-01 16 30035600 30035600 C T C16orf92 3'UTR 0.15 TCGA-UY-A9PH-01 16 30536210 30536210 G A ZNF768 Silent p.I417I 0.29 TCGA-UY-A9PH-01 16 3452307 3452307 G A ZNF174 Silent p.E101E 0.22 TCGA-UY-A9PH-01 16 4242496 4242496 G A SRL Silent p.F360F 0.24 TCGA-UY-A9PH-01 16 4524142 4524142 G A NMRAL1 5'UTR 0.10 TCGA-UY-A9PH-01 16 4718285 4718285 C T MGRN1 Missense_Mutation p.S233F 0.29 tolerated(0.07) probably_damaging(1) TCGA-UY-A9PH-01 16 47694615 47694615 C G PHKB Nonsense_Mutation p.S694* 0.30 TCGA-UY-A9PH-01 16 5115713 5115713 C T C16orf89 Missense_Mutation p.R66Q 0.08 tolerated(0.27) benign(0.068) TCGA-UY-A9PH-01 16 57719746 57719746 C G GPR97 Missense_Mutation p.S483W 0.29 tolerated(0.17) probably_damaging(1) TCGA-UY-A9PH-01 16 67876704 67876704 C T THAP11 Missense_Mutation p.R83C 0.35 deleterious(0) unknown(0) TCGA-UY-A9PH-01 16 67965093 67965093 G A CTRL Missense_Mutation p.P22S 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-UY-A9PH-01 16 70284923 70284923 C G EXOSC6 3'UTR 0.31 TCGA-UY-A9PH-01 16 72159872 72159872 C T PMFBP1 Missense_Mutation p.E750K 0.28 tolerated(0.06) benign(0.059) TCGA-UY-A9PH-01 16 77859162 77859162 C T VAT1L Missense_Mutation p.A128V 0.13 tolerated(0.59) possibly_damaging(0.615) TCGA-UY-A9PH-01 16 82101819 82101819 G A HSD17B2 Missense_Mutation p.E104K 0.32 tolerated(1) benign(0.015) TCGA-UY-A9PH-01 16 88891179 88891179 C T GALNS Missense_Mutation p.R413K 0.09 tolerated(1) benign(0.002) TCGA-UY-A9PH-01 16 90161013 90161013 C T TUBB8P7 Intron 0.32 TCGA-UY-A9PH-01 17 17106258 17106258 G A PLD6 Silent p.Y194Y 0.25 TCGA-UY-A9PH-01 17 19091383 19091383 G A SNORD3A RNA 0.06 TCGA-UY-A9PH-01 17 19318606 19318606 C G RNF112 Nonsense_Mutation p.S435* 0.43 TCGA-UY-A9PH-01 17 19319105 19319105 C A RNF112 Missense_Mutation p.L505M 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-UY-A9PH-01 17 2239818 2239818 C A TSR1 5'UTR 0.55 TCGA-UY-A9PH-01 17 27001997 27001997 C T SUPT6H Missense_Mutation p.R119W 0.33 deleterious(0) unknown(0) TCGA-UY-A9PH-01 17 27829628 27829628 G C TAOK1 Missense_Mutation p.E409Q 0.24 tolerated(0.3) benign(0.04) TCGA-UY-A9PH-01 17 27908782 27908782 G A GIT1 Silent p.F232F 0.17 TCGA-UY-A9PH-01 17 30677170 30677170 G A ZNF207 5'UTR 0.34 TCGA-UY-A9PH-01 17 30804536 30804536 C G PSMD11 Intron 0.17 TCGA-UY-A9PH-01 17 32647328 32647328 C T CCL8 Silent p.I39I 0.26 TCGA-UY-A9PH-01 17 33475381 33475381 G A UNC45B Silent p.L33L 0.16 TCGA-UY-A9PH-01 17 34958243 34958243 G A MRM1 Missense_Mutation p.A2T 0.16 tolerated_low_confidence(0.08) benign(0.016) TCGA-UY-A9PH-01 17 35609868 35609868 G A ACACA Nonsense_Mutation p.Q641* 0.19 TCGA-UY-A9PH-01 17 37186171 37186171 C T CTD-2206N4.2 5'Flank 0.19 TCGA-UY-A9PH-01 17 38447307 38447307 C T CDC6 Intron 0.32 TCGA-UY-A9PH-01 17 38447392 38447392 C G CDC6 Missense_Mutation p.H87Q 0.33 tolerated(0.69) benign(0.001) TCGA-UY-A9PH-01 17 38976798 38976798 C T KRT10 Missense_Mutation p.E278K 0.14 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 17 39888326 39888326 G A HAP1 Silent p.L253L 0.18 TCGA-UY-A9PH-01 17 42478148 42478148 C T GPATCH8 Missense_Mutation p.E433K 0.20 deleterious(0.01) possibly_damaging(0.873) TCGA-UY-A9PH-01 17 54921408 54921408 G A DGKE Missense_Mutation p.D165N 0.13 deleterious(0.01) possibly_damaging(0.513) TCGA-UY-A9PH-01 17 60087984 60087984 G C MED13 Missense_Mutation p.Q632E 0.29 tolerated(1) benign(0.029) TCGA-UY-A9PH-01 17 61902632 61902632 C A FTSJ3 Nonsense_Mutation p.E189* 0.21 TCGA-UY-A9PH-01 17 65944344 65944344 C T BPTF Silent p.F2616F 0.24 TCGA-UY-A9PH-01 17 7145647 7145647 C A GABARAP Translation_Start_Site p.M1? 0.58 deleterious(0.04) benign(0.008) TCGA-UY-A9PH-01 17 74772611 74772611 C T MFSD11 Silent p.F391F 0.35 TCGA-UY-A9PH-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.40 TCGA-UY-A9PH-01 17 76212803 76212803 G A BIRC5 Missense_Mutation p.E117K 0.15 tolerated(0.11) probably_damaging(0.917) TCGA-UY-A9PH-01 17 79684042 79684042 G A SLC25A10 Silent p.R158R 0.18 TCGA-UY-A9PH-01 18 20979534 20979534 C G TMEM241 Missense_Mutation p.R92T 0.11 deleterious(0.01) benign(0.138) TCGA-UY-A9PH-01 18 42531465 42531465 C A SETBP1 Silent p.T720T 0.27 TCGA-UY-A9PH-01 18 43445631 43445631 C G EPG5 Missense_Mutation p.E2239Q 0.32 tolerated(0.07) benign(0.265) TCGA-UY-A9PH-01 18 47500758 47500758 G C MYO5B Silent p.L428L 0.22 TCGA-UY-A9PH-01 18 50592488 50592488 G C DCC Missense_Mutation p.E405Q 0.19 deleterious(0.03) benign(0.055) TCGA-UY-A9PH-01 18 53254300 53254300 C G TCF4 Silent p.L118L 0.13 TCGA-UY-A9PH-01 18 54446755 54446755 G A WDR7 Missense_Mutation p.R1014Q 0.19 deleterious(0.01) possibly_damaging(0.52) TCGA-UY-A9PH-01 18 55143905 55143905 C G ONECUT2 Missense_Mutation p.L489V 0.27 tolerated(0.28) benign(0.026) TCGA-UY-A9PH-01 18 55352306 55352306 C G ATP8B1 Missense_Mutation p.E491Q 0.11 tolerated(0.2) benign(0.02) TCGA-UY-A9PH-01 18 67508639 67508639 G C DOK6 3'UTR 0.37 TCGA-UY-A9PH-01 18 67809586 67809586 G A RTTN Missense_Mutation p.S840L 0.08 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 18 8825348 8825348 G A SOGA2 Silent p.L1280L 0.17 TCGA-UY-A9PH-01 19 1004866 1004866 C G GRIN3B Missense_Mutation p.L456V 0.17 deleterious(0.03) benign(0.142) TCGA-UY-A9PH-01 19 1053410 1053410 G A ABCA7 Silent p.L1101L 0.19 TCGA-UY-A9PH-01 19 10789861 10789861 G A ILF3 Missense_Mutation p.R247Q 0.17 tolerated(0.09) probably_damaging(0.953) TCGA-UY-A9PH-01 19 10916589 10916589 C T DNM2 Intron 0.17 TCGA-UY-A9PH-01 19 10916634 10916634 C T DNM2 Silent p.I512I 0.14 TCGA-UY-A9PH-01 19 11533470 11533470 C G CCDC151 Missense_Mutation p.K392N 0.13 deleterious(0) probably_damaging(0.991) TCGA-UY-A9PH-01 19 12984453 12984453 C T MAST1 Missense_Mutation p.S1161L 0.24 deleterious(0.02) possibly_damaging(0.45) TCGA-UY-A9PH-01 19 13067699 13067699 C T GADD45GIP1 Missense_Mutation p.E110K 0.32 tolerated(0.33) benign(0.028) TCGA-UY-A9PH-01 19 14513431 14513431 C G CD97 Silent p.L402L 0.33 TCGA-UY-A9PH-01 19 17375134 17375134 G C USHBP1 5'UTR 0.33 TCGA-UY-A9PH-01 19 17688078 17688078 G A COLGALT1 Missense_Mutation p.E342K 0.38 tolerated(0.06) benign(0.327) TCGA-UY-A9PH-01 19 1785590 1785590 G A ATP8B3 Silent p.L1091L 0.33 TCGA-UY-A9PH-01 19 19166160 19166160 G A ARMC6 Silent p.T370T 0.33 TCGA-UY-A9PH-01 19 19168303 19168303 G A ARMC6 Missense_Mutation p.E458K 0.27 deleterious(0) probably_damaging(0.945) TCGA-UY-A9PH-01 19 21265039 21265039 C T ZNF714 5'UTR 0.22 TCGA-UY-A9PH-01 19 2280863 2280863 G A C19orf35 Missense_Mutation p.T23M 0.26 deleterious(0.01) probably_damaging(0.966) TCGA-UY-A9PH-01 19 2328462 2328462 C T LSM7 Silent p.K7K 0.19 TCGA-UY-A9PH-01 19 30106176 30106176 C T POP4 Silent p.F184F 0.16 TCGA-UY-A9PH-01 19 31769250 31769250 C G TSHZ3 Missense_Mutation p.E483D 0.23 tolerated(0.37) benign(0.004) TCGA-UY-A9PH-01 19 33137446 33137446 C G ANKRD27 Missense_Mutation p.E97Q 0.36 deleterious(0) benign(0.403) TCGA-UY-A9PH-01 19 33422418 33422418 C G CEP89 Missense_Mutation p.D316H 0.32 deleterious(0.03) benign(0.122) TCGA-UY-A9PH-01 19 33439223 33439223 G A CEP89 Nonsense_Mutation p.Q182* 0.15 TCGA-UY-A9PH-01 19 3452638 3452638 G A NFIC Missense_Mutation p.D415N 0.12 deleterious(0.02) probably_damaging(0.921) TCGA-UY-A9PH-01 19 3783952 3783952 C T MATK Missense_Mutation p.E149K 0.12 deleterious(0) probably_damaging(0.963) TCGA-UY-A9PH-01 19 40318041 40318041 C G DYRK1B Missense_Mutation p.E327Q 0.15 deleterious(0.04) possibly_damaging(0.662) TCGA-UY-A9PH-01 19 42818480 42818480 C T TMEM145 Silent p.F59F 0.18 TCGA-UY-A9PH-01 19 42907031 42907031 C G LIPE Missense_Mutation p.E899Q 0.19 tolerated(0.06) probably_damaging(0.968) TCGA-UY-A9PH-01 19 44585289 44585289 C T ZNF284 Missense_Mutation p.S46L 0.35 deleterious(0.03) benign(0.119) TCGA-UY-A9PH-01 19 50883087 50883087 C G NR1H2 Missense_Mutation p.I326M 0.23 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 19 53059183 53059183 C G ZNF808 3'UTR 0.29 TCGA-UY-A9PH-01 19 54973699 54973699 C A LENG9 Missense_Mutation p.Q359H 0.19 tolerated(0.09) benign(0.021) TCGA-UY-A9PH-01 19 571558 571558 C G BSG 5'Flank 0.22 TCGA-UY-A9PH-01 19 59010559 59010559 C T SLC27A5 Missense_Mutation p.E566K 0.22 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 19 59010581 59010581 C G SLC27A5 Missense_Mutation p.K558N 0.14 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 19 6772887 6772887 G C VAV1 Silent p.V23V 0.27 TCGA-UY-A9PH-01 19 8587285 8587285 C T MYO1F Missense_Mutation p.E1066K 0.25 deleterious(0.02) benign(0.089) TCGA-UY-A9PH-01 19 8665875 8665875 C T ADAMTS10 Silent p.K249K 0.19 TCGA-UY-A9PH-01 19 8665955 8665955 C A ADAMTS10 Nonsense_Mutation p.E223* 0.21 TCGA-UY-A9PH-01 19 9089752 9089752 G C MUC16 Nonsense_Mutation p.S688* 0.16 TCGA-UY-A9PH-01 1 101200147 101200147 G A VCAM1 Missense_Mutation p.V628I 0.28 tolerated(0.36) benign(0.246) TCGA-UY-A9PH-01 1 110740069 110740069 G A SLC6A17 Missense_Mutation p.E555K 0.15 deleterious(0) possibly_damaging(0.755) TCGA-UY-A9PH-01 1 11115981 11115981 C G SRM Missense_Mutation p.E208Q 0.53 deleterious(0) probably_damaging(0.992) TCGA-UY-A9PH-01 1 111726824 111726824 C G CEPT1 Missense_Mutation p.F381L 0.15 tolerated(1) benign(0) TCGA-UY-A9PH-01 1 11190601 11190601 C G MTOR Missense_Mutation p.Q1866H 0.20 tolerated(0.16) possibly_damaging(0.855) TCGA-UY-A9PH-01 1 118475937 118475937 C G WDR3 5'UTR 0.36 TCGA-UY-A9PH-01 1 145323654 145323654 G A NBPF10 Missense_Mutation p.R1164K 0.03 benign(0.137) TCGA-UY-A9PH-01 1 146658423 146658423 G A FMO5 3'UTR 0.34 TCGA-UY-A9PH-01 1 147084903 147084903 G C BCL9 Missense_Mutation p.G92A 0.16 tolerated(0.87) probably_damaging(0.98) TCGA-UY-A9PH-01 1 149871618 149871618 G A BOLA1 Silent p.L2L 0.18 TCGA-UY-A9PH-01 1 150235593 150235593 G T CA14 Nonsense_Mutation p.E239* 0.18 TCGA-UY-A9PH-01 1 158576309 158576309 C G OR10Z1 Silent p.L27L 0.31 TCGA-UY-A9PH-01 1 160001330 160001330 G T PIGM Nonsense_Mutation p.S67* 0.37 TCGA-UY-A9PH-01 1 160920404 160920404 C T ITLN2 Missense_Mutation p.R180K 0.85 tolerated(0.09) possibly_damaging(0.818) TCGA-UY-A9PH-01 1 160922432 160922432 C T ITLN2 Silent p.K57K 0.83 TCGA-UY-A9PH-01 1 161167938 161167938 G A ADAMTS4 Silent p.L160L 0.03 TCGA-UY-A9PH-01 1 16344385 16344385 G C HSPB7 Missense_Mutation p.S25C 0.15 deleterious_low_confidence(0.01) benign(0.094) TCGA-UY-A9PH-01 1 169772311 169772311 C G C1orf112 Missense_Mutation p.T58R 0.24 deleterious(0.02) possibly_damaging(0.76) TCGA-UY-A9PH-01 1 186643848 186643848 G C PTGS2 Missense_Mutation p.I484M 0.83 deleterious(0) possibly_damaging(0.811) TCGA-UY-A9PH-01 1 186645813 186645813 G C PTGS2 Silent p.V252V 0.84 TCGA-UY-A9PH-01 1 198711117 198711117 C T PTPRC Silent p.F841F 0.15 TCGA-UY-A9PH-01 1 19992591 19992591 C T HTR6 Silent p.L115L 0.19 TCGA-UY-A9PH-01 1 200958018 200958018 C T KIF21B Silent p.L1058L 0.14 TCGA-UY-A9PH-01 1 202702748 202702748 C A KDM5B Missense_Mutation p.E1230D 0.27 tolerated(0.16) benign(0.006) TCGA-UY-A9PH-01 1 204403032 204403032 G A PIK3C2B Silent p.I1244I 0.12 TCGA-UY-A9PH-01 1 204423823 204423823 G A PIK3C2B Silent p.L680L 0.34 TCGA-UY-A9PH-01 1 205033502 205033502 C A CNTN2 Silent p.A431A 0.31 TCGA-UY-A9PH-01 1 205033503 205033503 C G CNTN2 Missense_Mutation p.R432G 0.32 deleterious(0.01) probably_damaging(0.944) TCGA-UY-A9PH-01 1 212190357 212190357 C T INTS7 Missense_Mutation p.G127E 0.14 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 1 227219120 227219120 C G CDC42BPA Silent p.L1183L 0.30 TCGA-UY-A9PH-01 1 231489045 231489045 G A SPRTN Missense_Mutation p.E470K 0.16 deleterious(0.02) benign(0.229) TCGA-UY-A9PH-01 1 234458902 234458902 G C SLC35F3 Missense_Mutation p.K462N 0.39 deleterious(0.04) benign(0.031) TCGA-UY-A9PH-01 1 23520048 23520048 C T HTR1D Missense_Mutation p.R222Q 0.11 tolerated(0.64) benign(0.096) TCGA-UY-A9PH-01 1 235920751 235920751 C T LYST Missense_Mutation p.E2297K 0.13 deleterious(0.03) probably_damaging(0.991) TCGA-UY-A9PH-01 1 236195949 236195949 G A NID1 Missense_Mutation p.S430F 0.32 deleterious(0) probably_damaging(0.946) TCGA-UY-A9PH-01 1 237619914 237619914 C T RYR2 Silent p.L497L 0.43 TCGA-UY-A9PH-01 1 244217170 244217170 C T ZBTB18 Missense_Mutation p.L32F 0.15 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 1 245772807 245772807 G A KIF26B Missense_Mutation p.E631K 0.33 deleterious(0) unknown(0) TCGA-UY-A9PH-01 1 26517172 26517172 C G CATSPER4 Silent p.L18L 0.27 TCGA-UY-A9PH-01 1 28060584 28060584 G A FAM76A Missense_Mutation p.G116R 0.22 deleterious(0) probably_damaging(0.98) TCGA-UY-A9PH-01 1 29391509 29391509 C G EPB41 Missense_Mutation p.Q675E 0.36 tolerated(0.09) probably_damaging(0.993) TCGA-UY-A9PH-01 1 29391520 29391520 C T EPB41 Silent p.I678I 0.36 TCGA-UY-A9PH-01 1 31418327 31418327 C T PUM1 Missense_Mutation p.E954K 0.17 tolerated(0.08) benign(0.004) TCGA-UY-A9PH-01 1 31465283 31465283 G C PUM1 Nonsense_Mutation p.S371* 0.15 TCGA-UY-A9PH-01 1 32560490 32560490 G A TMEM39B Missense_Mutation p.D345N 0.19 deleterious(0.01) benign(0.066) TCGA-UY-A9PH-01 1 35579550 35579550 G A ZMYM1 Missense_Mutation p.D707N 0.19 tolerated(0.17) benign(0.335) TCGA-UY-A9PH-01 1 36859281 36859281 G A LSM10 3'UTR 0.12 TCGA-UY-A9PH-01 1 38446352 38446352 C G SF3A3 Missense_Mutation p.R199T 0.12 deleterious(0) possibly_damaging(0.562) TCGA-UY-A9PH-01 1 39800271 39800271 C T MACF1 Intron 0.31 TCGA-UY-A9PH-01 1 43317430 43317430 C T ZNF691 Silent p.L298L 0.21 TCGA-UY-A9PH-01 1 43913743 43913755 ACCCCAGGCTACA - SZT2 Splice_Site p.X3131_splice 0.26 TCGA-UY-A9PH-01 1 46662724 46662724 G A POMGNT1 Silent p.V51V 0.16 TCGA-UY-A9PH-01 1 47501795 47501795 C T CYP4X1 Nonsense_Mutation p.Q243* 0.37 TCGA-UY-A9PH-01 1 55534700 55534700 C G USP24 3'UTR 0.12 TCGA-UY-A9PH-01 1 60463291 60463291 C G C1orf87 Silent p.L490L 0.11 TCGA-UY-A9PH-01 1 6196898 6196898 G A CHD5 Silent p.L822L 0.16 TCGA-UY-A9PH-01 1 63069688 63069688 C G ANGPTL3 Missense_Mutation p.S327C 0.21 deleterious(0) probably_damaging(0.95) TCGA-UY-A9PH-01 1 65098412 65098412 G A CACHD1 Missense_Mutation p.D208N 0.22 tolerated(0.45) benign(0.013) TCGA-UY-A9PH-01 1 65129433 65129433 C G CACHD1 Silent p.L618L 0.14 TCGA-UY-A9PH-01 1 6648248 6648248 G C ZBTB48 Missense_Mutation p.R503P 0.17 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 1 67293582 67293582 G A WDR78 Silent p.I675I 0.20 TCGA-UY-A9PH-01 1 75038328 75038328 G C C1orf173 Silent p.A1022A 0.16 TCGA-UY-A9PH-01 1 78204948 78204948 A G USP33 Splice_Site p.X148_splice 0.22 TCGA-UY-A9PH-01 1 9107729 9107729 T C SLC2A5 Missense_Mutation p.R120G 0.44 tolerated(0.08) benign(0.045) TCGA-UY-A9PH-01 20 1438861 1438861 C T NSFL1C Missense_Mutation p.E88K 0.12 deleterious(0.01) benign(0.423) TCGA-UY-A9PH-01 20 17639586 17639586 C T RRBP1 Intron 0.33 TCGA-UY-A9PH-01 20 19956145 19956145 C T RIN2 Silent p.L541L 0.25 TCGA-UY-A9PH-01 20 2308867 2308867 C T TGM3 Missense_Mutation p.R397C 0.08 tolerated(0.1) benign(0.029) TCGA-UY-A9PH-01 20 2644845 2644845 G C IDH3B 5'UTR 0.19 TCGA-UY-A9PH-01 20 30193682 30193682 G A ID1 Intron 0.38 TCGA-UY-A9PH-01 20 30232580 30232580 C T COX4I2 Missense_Mutation p.P130L 0.10 deleterious(0.01) benign(0.395) TCGA-UY-A9PH-01 20 30386222 30386222 G A TPX2 Missense_Mutation p.R667K 0.05 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 20 30734595 30734595 G C TM9SF4 Silent p.L297L 0.29 TCGA-UY-A9PH-01 20 30734625 30734625 G C TM9SF4 Missense_Mutation p.K307N 0.24 deleterious(0) possibly_damaging(0.906) TCGA-UY-A9PH-01 20 3278776 3278776 G C C20orf194 Nonsense_Mutation p.S610* 0.17 TCGA-UY-A9PH-01 20 35467623 35467623 G C SOGA1 Silent p.V303V 0.33 TCGA-UY-A9PH-01 20 37356607 37356607 C T SLC32A1 Silent p.I301I 0.18 TCGA-UY-A9PH-01 20 37356667 37356667 C T SLC32A1 Silent p.I321I 0.15 TCGA-UY-A9PH-01 20 45355597 45355597 C T SLC2A10 Silent p.F461F 0.10 TCGA-UY-A9PH-01 20 45355600 45355600 C A SLC2A10 Silent p.I462I 0.10 TCGA-UY-A9PH-01 20 47645105 47645105 G C ARFGEF2 Missense_Mutation p.E1655Q 0.20 deleterious(0) possibly_damaging(0.847) TCGA-UY-A9PH-01 20 47863887 47863887 C T ZNFX1 Missense_Mutation p.E1892K 0.36 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 20 48504462 48504462 G C SLC9A8 Missense_Mutation p.E595Q 0.15 deleterious(0.01) possibly_damaging(0.901) TCGA-UY-A9PH-01 20 52192921 52192921 C T ZNF217 Silent p.Q794Q 0.13 TCGA-UY-A9PH-01 20 54824179 54824179 G C MC3R Missense_Mutation p.E94Q 0.16 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 20 61982262 61982262 G A CHRNA4 Silent p.F167F 0.24 TCGA-UY-A9PH-01 20 62162198 62162198 C T PTK6 Silent p.S305S 0.15 TCGA-UY-A9PH-01 21 31874290 31874290 C T KRTAP19-5 Missense_Mutation p.G40D 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-UY-A9PH-01 21 42843855 42843855 G C TMPRSS2 Missense_Mutation p.S355C 0.27 deleterious(0.01) possibly_damaging(0.905) TCGA-UY-A9PH-01 21 43325908 43325908 C T C2CD2 Missense_Mutation p.E453K 0.38 deleterious(0.03) benign(0.241) TCGA-UY-A9PH-01 21 43411159 43411159 C T ZBTB21 Missense_Mutation p.E1016K 0.05 deleterious(0.01) possibly_damaging(0.907) TCGA-UY-A9PH-01 21 43411420 43411420 C G ZBTB21 Missense_Mutation p.E929Q 0.14 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 21 43411457 43411457 C G ZBTB21 Missense_Mutation p.K916N 0.17 tolerated(0.13) benign(0.401) TCGA-UY-A9PH-01 21 43411627 43411627 C G ZBTB21 Missense_Mutation p.D860H 0.17 deleterious(0) probably_damaging(0.993) TCGA-UY-A9PH-01 21 43412228 43412228 C G ZBTB21 Missense_Mutation p.K659N 0.17 deleterious(0) possibly_damaging(0.898) TCGA-UY-A9PH-01 21 43412801 43412801 C T ZBTB21 Silent p.L468L 0.19 TCGA-UY-A9PH-01 21 44441526 44441526 C G PKNOX1 Silent p.L278L 0.06 TCGA-UY-A9PH-01 21 45811300 45811300 C T TRPM2 Missense_Mutation p.S529F 0.10 tolerated(0.11) benign(0.021) TCGA-UY-A9PH-01 21 47976001 47976001 G T DIP2A Silent p.V1165V 0.23 TCGA-UY-A9PH-01 22 23243340 23248698 22:23243340-23248698 - IGLJ3 large deletion 0.14 TCGA-UY-A9PH-01 22 30125647 30125647 C T CABP7 3'UTR 0.28 TCGA-UY-A9PH-01 22 31668686 31668686 G A LIMK2 Silent p.L497L 0.21 TCGA-UY-A9PH-01 22 31850318 31850318 G A EIF4ENIF1 Silent p.L442L 0.09 TCGA-UY-A9PH-01 22 38695943 38695943 C T CSNK1E Silent p.K231K 0.19 TCGA-UY-A9PH-01 22 39884270 39884270 C T MGAT3 Silent p.N306N 0.45 TCGA-UY-A9PH-01 22 42456267 42456267 C T NAGA 3'UTR 0.19 TCGA-UY-A9PH-01 22 43035904 43035904 G A ATP5L2 3'UTR 0.30 TCGA-UY-A9PH-01 22 43658774 43658774 C G SCUBE1 Missense_Mutation p.D188H 0.14 deleterious(0.03) probably_damaging(0.942) TCGA-UY-A9PH-01 22 50217863 50217863 G C BRD1 Missense_Mutation p.Q35E 0.32 tolerated(0.25) benign(0.241) TCGA-UY-A9PH-01 22 50714136 50714136 G C AL022328.1 Missense_Mutation p.E12Q 0.48 deleterious_low_confidence(0) unknown(0) TCGA-UY-A9PH-01 22 50967977 50967977 G C TYMP Missense_Mutation p.I54M 0.30 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 2 128409308 128409308 G A GPR17 Silent p.L361L 0.39 TCGA-UY-A9PH-01 2 155555578 155555578 C T KCNJ3 Silent p.F97F 0.22 TCGA-UY-A9PH-01 2 160086612 160086612 C T TANC1 Nonsense_Mutation p.Q1559* 0.12 TCGA-UY-A9PH-01 2 170592181 170592181 C G KLHL23 Silent p.L219L 0.32 TCGA-UY-A9PH-01 2 171258002 171258002 C A MYO3B Missense_Mutation p.L644M 0.10 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 2 174946671 174946671 C T OLA1 Missense_Mutation p.E284K 0.38 tolerated(1) benign(0.005) TCGA-UY-A9PH-01 2 174946672 174946672 C T OLA1 Silent p.L283L 0.37 TCGA-UY-A9PH-01 2 179417514 179417514 G A TTN Missense_Mutation p.S30038L 0.23 TCGA-UY-A9PH-01 2 179441024 179441024 G A TTN Missense_Mutation p.H23279Y 0.07 TCGA-UY-A9PH-01 2 179452679 179452679 C T TTN Missense_Mutation p.G21152D 0.07 TCGA-UY-A9PH-01 2 179587506 179587506 T C TTN Missense_Mutation p.T7374A 0.14 TCGA-UY-A9PH-01 2 179648835 179648835 C T TTN Missense_Mutation p.E913K 0.38 TCGA-UY-A9PH-01 2 179659208 179659208 C G TTN Missense_Mutation p.R439T 0.19 TCGA-UY-A9PH-01 2 198948700 198948700 C T PLCL1 Silent p.L153L 0.12 TCGA-UY-A9PH-01 2 20870915 20870915 C T GDF7 Silent p.L361L 0.12 TCGA-UY-A9PH-01 2 212251832 212251832 C T ERBB4 Missense_Mutation p.G1076E 0.18 tolerated(0.07) benign(0.145) TCGA-UY-A9PH-01 2 216230280 216230280 C T FN1 Missense_Mutation p.M2364I 0.24 deleterious(0.02) benign(0.338) TCGA-UY-A9PH-01 2 220150684 220150684 C T DNAJB2 3'UTR 0.40 TCGA-UY-A9PH-01 2 227662285 227662285 G A IRS1 Silent p.V390V 0.11 TCGA-UY-A9PH-01 2 231112765 231112765 G C SP140 Missense_Mutation p.E293Q 0.21 tolerated(0.36) benign(0.02) TCGA-UY-A9PH-01 2 232319816 232319816 C T NCL 3'UTR 0.14 TCGA-UY-A9PH-01 2 232319870 232319870 C G NCL 3'UTR 0.21 TCGA-UY-A9PH-01 2 239025622 239025622 G A ESPNL Missense_Mutation p.E312K 0.19 tolerated(0.06) benign(0.17) TCGA-UY-A9PH-01 2 242793385 242793385 C T PDCD1 Missense_Mutation p.R231Q 0.19 deleterious(0.02) possibly_damaging(0.806) TCGA-UY-A9PH-01 2 24538026 24538026 G C ITSN2 Silent p.L33L 0.23 TCGA-UY-A9PH-01 2 26950605 26950605 C T KCNK3 Silent p.I118I 0.38 TCGA-UY-A9PH-01 2 26950840 26950840 C T KCNK3 Missense_Mutation p.L197F 0.38 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 2 27590687 27590687 C T EIF2B4 Silent p.V256V 0.20 TCGA-UY-A9PH-01 2 27603248 27603248 C T ZNF513 Intron 0.27 TCGA-UY-A9PH-01 2 28530987 28530987 T C BRE Intron 0.31 TCGA-UY-A9PH-01 2 37443323 37443323 C T CEBPZ Silent p.P780P 0.16 TCGA-UY-A9PH-01 2 44548524 44548524 C T PREPL Missense_Mutation p.E719K 0.33 deleterious_low_confidence(0.01) benign(0.098) TCGA-UY-A9PH-01 2 47278938 47278938 G A TTC7A Missense_Mutation p.E691K 0.27 deleterious(0) probably_damaging(0.976) TCGA-UY-A9PH-01 2 63217961 63217961 G C EHBP1 Missense_Mutation p.E978Q 0.14 tolerated(0.05) benign(0.01) TCGA-UY-A9PH-01 2 69046285 69046285 T C ARHGAP25 Missense_Mutation p.M345T 0.16 deleterious(0) benign(0.268) TCGA-UY-A9PH-01 2 73868208 73868208 G C NAT8 Missense_Mutation p.S183C 0.40 deleterious(0.02) possibly_damaging(0.895) TCGA-UY-A9PH-01 2 85097728 85097728 G C TRABD2A Nonsense_Mutation p.S97* 0.12 TCGA-UY-A9PH-01 2 8870985 8870985 C G KIDINS220 Missense_Mutation p.E1727D 0.39 tolerated_low_confidence(0.14) benign(0.011) TCGA-UY-A9PH-01 2 95772194 95772194 C G MRPS5 Missense_Mutation p.E216Q 0.13 deleterious(0.01) possibly_damaging(0.675) TCGA-UY-A9PH-01 3 10070396 10070396 G T FANCD2 Missense_Mutation p.D19Y 0.15 deleterious(0) probably_damaging(0.94) TCGA-UY-A9PH-01 3 101395550 101395550 C T ZBTB11 Missense_Mutation p.R70Q 0.31 deleterious_low_confidence(0) possibly_damaging(0.508) TCGA-UY-A9PH-01 3 109046871 109046871 C T DPPA4 Silent p.R293R 0.36 TCGA-UY-A9PH-01 3 111887850 111887850 C T SLC9C1 Missense_Mutation p.M1037I 0.16 tolerated(0.19) benign(0.003) TCGA-UY-A9PH-01 3 111887861 111887861 C T SLC9C1 Missense_Mutation p.D1034N 0.16 deleterious(0.03) benign(0.172) TCGA-UY-A9PH-01 3 122552163 122552163 G C DIRC2 Splice_Site p.X235_splice 0.39 TCGA-UY-A9PH-01 3 122552284 122552284 G C DIRC2 Missense_Mutation p.R275T 0.49 tolerated(0.11) benign(0.006) TCGA-UY-A9PH-01 3 123008685 123008685 G C ADCY5 Missense_Mutation p.I1148M 0.47 deleterious(0.05) probably_damaging(0.973) TCGA-UY-A9PH-01 3 123426708 123426708 G A MYLK Silent p.L761L 0.27 TCGA-UY-A9PH-01 3 127318260 127318260 G A MCM2 Missense_Mutation p.D36N 0.38 deleterious(0.04) benign(0.156) TCGA-UY-A9PH-01 3 132166763 132166763 G A DNAJC13 Missense_Mutation p.E106K 0.15 tolerated(0.09) benign(0.008) TCGA-UY-A9PH-01 3 136708386 136708386 G C IL20RB Missense_Mutation p.W170C 0.34 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 3 138023786 138023786 G A NME9 Silent p.D179D 0.06 TCGA-UY-A9PH-01 3 150421320 150421320 C T FAM194A Silent p.P122P 0.14 TCGA-UY-A9PH-01 3 152880442 152880442 G A RAP2B 5'UTR 0.41 TCGA-UY-A9PH-01 3 16250072 16250072 C A GALNT15 Nonsense_Mutation p.S325* 0.35 TCGA-UY-A9PH-01 3 170841451 170841451 C G TNIK Missense_Mutation p.R685T 0.19 tolerated(0.1) probably_damaging(0.979) TCGA-UY-A9PH-01 3 182598664 182598664 C T ATP11B Intron 0.10 TCGA-UY-A9PH-01 3 183515778 183515778 C G YEATS2 Silent p.L1055L 0.07 TCGA-UY-A9PH-01 3 183526914 183526914 G A YEATS2 Silent p.L1372L 0.10 TCGA-UY-A9PH-01 3 185226661 185226661 G A LIPH Nonsense_Mutation p.Q425* 0.16 TCGA-UY-A9PH-01 3 197639559 197639559 C G IQCG Missense_Mutation p.R317T 0.03 deleterious(0.04) benign(0.412) TCGA-UY-A9PH-01 3 19930021 19930021 G A EFHB Silent p.F616F 0.27 TCGA-UY-A9PH-01 3 33855053 33855053 C G PDCD6IP Missense_Mutation p.I89M 0.25 deleterious(0) possibly_damaging(0.708) TCGA-UY-A9PH-01 3 38103836 38103836 G C DLEC1 Missense_Mutation p.E284Q 0.15 tolerated(0.71) benign(0) TCGA-UY-A9PH-01 3 38753798 38753798 C T SCN10A Missense_Mutation p.D1315N 0.16 tolerated(0.47) benign(0.004) TCGA-UY-A9PH-01 3 47045403 47045403 G A NBEAL2 Missense_Mutation p.E1940K 0.35 deleterious(0) possibly_damaging(0.688) TCGA-UY-A9PH-01 3 47045650 47045650 G C NBEAL2 Missense_Mutation p.E1989Q 0.21 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 3 48507036 48507036 G C ATRIP 3'UTR 0.24 TCGA-UY-A9PH-01 3 48507833 48507833 G C TREX1 5'UTR 0.20 TCGA-UY-A9PH-01 3 49932792 49932792 C T MST1R Missense_Mutation p.D1027N 0.12 tolerated(0.25) benign(0.009) TCGA-UY-A9PH-01 3 49933757 49933757 C T MST1R Silent p.G840G 0.18 TCGA-UY-A9PH-01 3 52523606 52523606 C T NISCH Missense_Mutation p.S1123L 0.19 tolerated(0.44) benign(0.001) TCGA-UY-A9PH-01 3 52553378 52553378 C T STAB1 Silent p.P1711P 0.15 TCGA-UY-A9PH-01 3 52554285 52554285 C G STAB1 Missense_Mutation p.F1826L 0.10 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 3 52554530 52554530 C A STAB1 Missense_Mutation p.R1872S 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-UY-A9PH-01 3 52811720 52811720 C T ITIH1 Missense_Mutation p.S30L 0.12 tolerated(0.45) benign(0.001) TCGA-UY-A9PH-01 3 57281431 57281431 C G APPL1 Missense_Mutation p.F210L 0.18 tolerated(0.06) possibly_damaging(0.842) TCGA-UY-A9PH-01 3 58410642 58410642 G C PXK Missense_Mutation p.L564F 0.33 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 3 58519788 58519788 G C ACOX2 Silent p.A136A 0.24 TCGA-UY-A9PH-01 3 78700967 78700967 G A ROBO1 Silent p.I909I 0.10 TCGA-UY-A9PH-01 4 100521887 100521887 C G MTTP Silent p.L411L 0.49 TCGA-UY-A9PH-01 4 143324151 143324151 G C INPP4B Missense_Mutation p.I104M 0.19 deleterious(0) probably_damaging(0.918) TCGA-UY-A9PH-01 4 151505122 151505122 G A MAB21L2 Missense_Mutation p.R314H 0.29 deleterious(0.03) benign(0.068) TCGA-UY-A9PH-01 4 158257603 158257603 C T GRIA2 Silent p.F516F 0.05 TCGA-UY-A9PH-01 4 2744064 2744064 G T TNIP2 Missense_Mutation p.Q404K 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-UY-A9PH-01 4 39229850 39229850 G A WDR19 Silent p.E550E 0.35 TCGA-UY-A9PH-01 4 55602887 55602887 G A KIT Missense_Mutation p.G866E 0.44 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 4 95229847 95229847 C A HPGDS Missense_Mutation p.V92L 0.12 tolerated(0.11) benign(0.043) TCGA-UY-A9PH-01 5 128844787 128844787 C G ADAMTS19 Silent p.L249L 0.15 TCGA-UY-A9PH-01 5 13759060 13759060 G A DNAH5 Silent p.L3438L 0.35 TCGA-UY-A9PH-01 5 137766079 137766079 G A KDM3B Missense_Mutation p.D1679N 0.27 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 5 140564297 140564297 G A PCDHB16 Silent p.S721S 0.32 TCGA-UY-A9PH-01 5 140589070 140589070 C G PCDHB12 Missense_Mutation p.D197E 0.55 tolerated_low_confidence(0.06) possibly_damaging(0.58) TCGA-UY-A9PH-01 5 146754652 146754652 G A STK32A Splice_Site p.X302_splice 0.23 TCGA-UY-A9PH-01 5 180630496 180630496 C G TRIM7 Intron 0.34 TCGA-UY-A9PH-01 5 35068335 35068335 C T PRLR Missense_Mutation p.D280N 0.10 deleterious(0.01) probably_damaging(1) TCGA-UY-A9PH-01 5 43174936 43174936 C G ZNF131 Missense_Mutation p.L491V 0.20 tolerated(0.16) benign(0.016) TCGA-UY-A9PH-01 5 52363045 52363045 T C ITGA2 Missense_Mutation p.F681L 0.17 tolerated(0.08) benign(0.034) TCGA-UY-A9PH-01 5 68736324 68736324 G C MARVELD2 Missense_Mutation p.K517N 0.49 deleterious(0) probably_damaging(0.928) TCGA-UY-A9PH-01 5 73142264 73142264 T C ARHGEF28 Silent p.A533A 0.08 TCGA-UY-A9PH-01 5 82969357 82969357 G T HAPLN1 5'UTR 0.48 TCGA-UY-A9PH-01 6 106553418 106553418 C A PRDM1 Silent p.L461L 0.12 TCGA-UY-A9PH-01 6 110567253 110567253 G A METTL24 Missense_Mutation p.H333Y 0.12 tolerated(0.12) benign(0.014) TCGA-UY-A9PH-01 6 111632326 111632326 C G REV3L Missense_Mutation p.R2914T 0.11 deleterious(0) possibly_damaging(0.85) TCGA-UY-A9PH-01 6 111643787 111643787 T C REV3L Missense_Mutation p.Y2779C 0.20 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 6 112443383 112443383 G C LAMA4 Missense_Mutation p.P1437A 0.27 tolerated(0.78) benign(0.003) TCGA-UY-A9PH-01 6 116879168 116879168 C A FAM26D Missense_Mutation p.R104S 0.32 tolerated(0.18) possibly_damaging(0.644) TCGA-UY-A9PH-01 6 117896444 117896444 C G GOPC Missense_Mutation p.L182F 0.19 tolerated(0.1) benign(0.111) TCGA-UY-A9PH-01 6 125369373 125369373 G A RNF217 Intron 0.29 TCGA-UY-A9PH-01 6 127898409 127898409 G T C6orf58 Nonsense_Mutation p.E27* 0.30 TCGA-UY-A9PH-01 6 136597082 136597082 G A BCLAF1 Silent p.F527F 0.07 TCGA-UY-A9PH-01 6 152443466 152443466 G A SYNE1 3'UTR 0.09 TCGA-UY-A9PH-01 6 159191829 159191829 C T EZR Missense_Mutation p.D353N 0.10 tolerated(0.11) benign(0.009) TCGA-UY-A9PH-01 6 161160158 161160158 G A PLG Missense_Mutation p.E646K 0.12 deleterious(0.02) probably_damaging(0.985) TCGA-UY-A9PH-01 6 170870984 170870984 G A TBP Missense_Mutation p.E54K 0.08 tolerated_low_confidence(0.07) unknown(0) TCGA-UY-A9PH-01 6 20102612 20102612 G C MBOAT1 Missense_Mutation p.L465V 0.38 tolerated(0.19) benign(0.009) TCGA-UY-A9PH-01 6 20212397 20212397 G A MBOAT1 Silent p.L23L 0.33 TCGA-UY-A9PH-01 6 27799233 27799233 C T HIST1H4K Missense_Mutation p.D25N 0.12 tolerated_low_confidence(0.05) benign(0.205) TCGA-UY-A9PH-01 6 32122491 32122491 C G PPT2 Missense_Mutation p.I46M 0.36 deleterious(0) probably_damaging(0.987) TCGA-UY-A9PH-01 6 32163297 32163297 C T NOTCH4 Missense_Mutation p.E1977K 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-UY-A9PH-01 6 33048612 33048612 G T HLA-DPB1 Missense_Mutation p.W88C 0.21 deleterious(0) benign(0.212) TCGA-UY-A9PH-01 6 35378951 35378951 C T PPARD Silent p.L29L 0.17 TCGA-UY-A9PH-01 6 36842637 36842637 C T PPIL1 5'UTR 0.42 TCGA-UY-A9PH-01 6 38704921 38704921 C G DNAH8 Missense_Mutation p.P64A 0.25 benign(0.031) TCGA-UY-A9PH-01 6 38704981 38704981 G A DNAH8 Missense_Mutation p.E84K 0.22 benign(0.035) TCGA-UY-A9PH-01 6 39073546 39073546 C T SAYSD1 Missense_Mutation p.A72T 0.05 tolerated(0.47) benign(0.014) TCGA-UY-A9PH-01 6 41035029 41035029 G C OARD1 3'UTR 0.19 TCGA-UY-A9PH-01 6 42600451 42600451 C G UBR2 Silent p.L481L 0.28 TCGA-UY-A9PH-01 6 83904163 83904163 G A RWDD2A 5'UTR 0.15 TCGA-UY-A9PH-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.14 deleterious(0) possibly_damaging(0.79) TCGA-UY-A9PH-01 7 100225560 100225560 C G TFR2 Silent p.L525L 0.23 TCGA-UY-A9PH-01 7 100225578 100225578 G T TFR2 Silent p.A519A 0.24 TCGA-UY-A9PH-01 7 102738848 102738848 G C ARMC10 Missense_Mutation p.E294Q 0.08 deleterious(0.03) possibly_damaging(0.491) TCGA-UY-A9PH-01 7 11416215 11416215 G C THSD7A Missense_Mutation p.S1624C 0.23 tolerated(0.21) possibly_damaging(0.695) TCGA-UY-A9PH-01 7 117864775 117864775 C T ANKRD7 5'UTR 0.32 TCGA-UY-A9PH-01 7 122768973 122768973 G A SLC13A1 Silent p.L353L 0.20 TCGA-UY-A9PH-01 7 127631015 127631015 G A SND1 Missense_Mutation p.R562K 0.26 tolerated(0.13) possibly_damaging(0.785) TCGA-UY-A9PH-01 7 134618697 134618697 G A CALD1 Missense_Mutation p.E393K 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-UY-A9PH-01 7 135329713 135329713 G T NUP205 Missense_Mutation p.R1877L 0.08 deleterious(0.01) possibly_damaging(0.612) TCGA-UY-A9PH-01 7 138764768 138764768 G A ZC3HAV1 Missense_Mutation p.R307W 0.26 tolerated(0.09) possibly_damaging(0.551) TCGA-UY-A9PH-01 7 142180790 142180790 G A TRBV6-5 Silent p.V23V 0.08 TCGA-UY-A9PH-01 7 143701967 143701967 G C OR6B1 Missense_Mutation p.R293P 0.12 deleterious(0) benign(0.36) TCGA-UY-A9PH-01 7 144060267 144060267 G A ARHGEF5 Missense_Mutation p.E169K 0.07 tolerated(1) benign(0.002) TCGA-UY-A9PH-01 7 149494390 149494390 C G SSPO RNA 0.19 TCGA-UY-A9PH-01 7 149576542 149576542 G A ATP6V0E2 Missense_Mutation p.D140N 0.21 tolerated_low_confidence(0.12) benign(0.094) TCGA-UY-A9PH-01 7 150555035 150555035 G T AOC1 Nonsense_Mutation p.E493* 0.11 TCGA-UY-A9PH-01 7 151874176 151874176 G A KMT2C Nonsense_Mutation p.Q2788* 0.33 TCGA-UY-A9PH-01 7 17373641 17373641 C G AHR Missense_Mutation p.P271A 0.11 deleterious(0) possibly_damaging(0.888) TCGA-UY-A9PH-01 7 27181344 27181344 G C HOXA5 3'UTR 0.17 TCGA-UY-A9PH-01 7 30704683 30704683 G A CRHR2 Intron 0.17 TCGA-UY-A9PH-01 7 30704790 30704790 G A CRHR2 Silent p.L174L 0.30 TCGA-UY-A9PH-01 7 32910364 32910364 C T KBTBD2 Missense_Mutation p.M155I 0.14 tolerated(0.3) benign(0.103) TCGA-UY-A9PH-01 7 43916401 43916401 G A URGCP Silent p.P887P 0.13 TCGA-UY-A9PH-01 7 45016173 45016173 C T MYO1G Missense_Mutation p.E130K 0.33 deleterious(0) probably_damaging(0.998) TCGA-UY-A9PH-01 7 45956914 45956914 C G IGFBP3 Missense_Mutation p.K182N 0.30 deleterious(0.01) possibly_damaging(0.71) TCGA-UY-A9PH-01 7 56125778 56125778 C T CCT6A Missense_Mutation p.S236L 0.20 deleterious(0) probably_damaging(0.976) TCGA-UY-A9PH-01 7 72396861 72396861 C G POM121 5'UTR 0.12 TCGA-UY-A9PH-01 7 73183942 73183942 G T CLDN3 Missense_Mutation p.F146L 0.32 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 7 73184119 73184119 G A CLDN3 Silent p.I87I 0.39 TCGA-UY-A9PH-01 7 81372765 81372765 C T HGF Missense_Mutation p.D257N 0.26 deleterious(0) possibly_damaging(0.697) TCGA-UY-A9PH-01 7 91726366 91726366 G T AKAP9 Nonsense_Mutation p.E3365* 0.15 TCGA-UY-A9PH-01 7 91957103 91957103 G T ANKIB1 Nonsense_Mutation p.E226* 0.28 TCGA-UY-A9PH-01 7 92099320 92099320 C G ERVW-1 Missense_Mutation p.E126Q 0.39 tolerated(0.74) benign(0.024) TCGA-UY-A9PH-01 7 95665003 95665003 G A DYNC1I1 Missense_Mutation p.V452I 0.28 tolerated(0.09) probably_damaging(0.99) TCGA-UY-A9PH-01 7 99697331 99697331 C G MCM7 Missense_Mutation p.D53H 0.29 deleterious(0) probably_damaging(0.966) TCGA-UY-A9PH-01 8 101252921 101252921 G A SPAG1 Silent p.L857L 0.11 TCGA-UY-A9PH-01 8 102555640 102555640 C T GRHL2 Silent p.L64L 0.29 TCGA-UY-A9PH-01 8 105361368 105361368 C T DCSTAMP Silent p.V196V 0.30 TCGA-UY-A9PH-01 8 110456059 110456059 G A PKHD1L1 Silent p.P1573P 0.09 TCGA-UY-A9PH-01 8 117870633 117870633 C T RAD21 Missense_Mutation p.E147K 0.23 deleterious(0) possibly_damaging(0.766) TCGA-UY-A9PH-01 8 131414187 131414187 C A ASAP1 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0) unknown(0) TCGA-UY-A9PH-01 8 141525388 141525388 G A CHRAC1 3'UTR 0.15 TCGA-UY-A9PH-01 8 141551359 141551359 G A AGO2 Silent p.V646V 0.21 TCGA-UY-A9PH-01 8 142225954 142225954 G A SLC45A4 Silent p.Y564Y 0.15 TCGA-UY-A9PH-01 8 144356908 144356908 G A GLI4 Silent p.Q53Q 0.31 TCGA-UY-A9PH-01 8 145617176 145617176 G C ADCK5 Missense_Mutation p.Q350H 0.13 deleterious(0) probably_damaging(0.996) TCGA-UY-A9PH-01 8 16021594 16021594 C T MSR1 Missense_Mutation p.R266K 0.18 tolerated(1) benign(0.004) TCGA-UY-A9PH-01 8 21929884 21929884 G C DMTN Missense_Mutation p.E218Q 0.33 tolerated(0.23) benign(0.017) TCGA-UY-A9PH-01 8 38122373 38122373 T C PPAPDC1B Intron 0.16 TCGA-UY-A9PH-01 8 42317422 42317422 C T SLC20A2 Missense_Mutation p.G202E 0.12 deleterious(0) possibly_damaging(0.884) TCGA-UY-A9PH-01 8 49643119 49643119 G A EFCAB1 Missense_Mutation p.S100F 0.36 deleterious(0) possibly_damaging(0.466) TCGA-UY-A9PH-01 8 54708240 54708240 C G ATP6V1H Missense_Mutation p.E279D 0.32 deleterious(0.04) probably_damaging(0.997) TCGA-UY-A9PH-01 8 80915324 80915324 C T MRPS28 Missense_Mutation p.G102E 0.25 deleterious(0) probably_damaging(1) TCGA-UY-A9PH-01 8 82370865 82370865 C G FABP9 Missense_Mutation p.R107T 0.36 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 8 82370923 82370923 C G FABP9 Missense_Mutation p.E88Q 0.36 deleterious(0.02) benign(0.105) TCGA-UY-A9PH-01 8 95862252 95862252 G C INTS8 Missense_Mutation p.Q480H 0.31 tolerated(0.12) benign(0.009) TCGA-UY-A9PH-01 9 101895004 101895004 C T TGFBR1 Missense_Mutation p.T186M 0.17 deleterious(0) probably_damaging(0.995) TCGA-UY-A9PH-01 9 103279025 103279025 G A TMEFF1 Missense_Mutation p.E178K 0.38 deleterious(0.04) probably_damaging(0.98) TCGA-UY-A9PH-01 9 115652371 115652371 C G SLC46A2 Missense_Mutation p.Q197H 0.72 tolerated(0.58) possibly_damaging(0.639) TCGA-UY-A9PH-01 9 119413985 119413985 G A ASTN2 Missense_Mutation p.S914L 0.19 deleterious(0.02) unknown(0) TCGA-UY-A9PH-01 9 119460354 119460354 C T TRIM32 Silent p.F111F 0.13 TCGA-UY-A9PH-01 9 126144827 126144827 G C DENND1A Silent p.L638L 0.45 TCGA-UY-A9PH-01 9 127115946 127115946 G A PSMB7 Silent p.L255L 0.45 TCGA-UY-A9PH-01 9 128122945 128122945 G A GAPVD1 Missense_Mutation p.E1422K 0.45 deleterious(0.01) benign(0.268) TCGA-UY-A9PH-01 9 129148844 129148844 C T MVB12B Missense_Mutation p.H106Y 0.63 deleterious(0.03) benign(0.16) TCGA-UY-A9PH-01 9 131370491 131370491 C G SPTAN1 Nonsense_Mutation p.S1476* 0.53 TCGA-UY-A9PH-01 9 131456986 131456986 C T SET 3'UTR 0.66 TCGA-UY-A9PH-01 9 131482819 131482819 C T PKN3 Silent p.L868L 0.31 TCGA-UY-A9PH-01 9 139837027 139837027 G A FBXW5 Missense_Mutation p.S216L 0.28 deleterious(0) probably_damaging(0.941) TCGA-UY-A9PH-01 9 140138131 140138131 G A FAM166A 3'UTR 0.53 TCGA-UY-A9PH-01 9 140728821 140728821 C T EHMT1 Silent p.I1187I 0.18 TCGA-UY-A9PH-01 9 20821023 20821023 G C FOCAD Missense_Mutation p.E582D 0.13 tolerated(0.14) possibly_damaging(0.831) TCGA-UY-A9PH-01 9 2837277 2837277 C G KIAA0020 Missense_Mutation p.K69N 0.56 tolerated(0.07) benign(0.028) TCGA-UY-A9PH-01 9 34400961 34400961 G A FAM219A 3'UTR 0.75 TCGA-UY-A9PH-01 9 35389933 35389933 G A UNC13B Missense_Mutation p.E980K 0.53 deleterious(0) probably_damaging(0.999) TCGA-UY-A9PH-01 9 36581650 36581650 C G MELK 5'UTR 0.31 TCGA-UY-A9PH-01 9 99272047 99272047 C G CDC14B Missense_Mutation p.Q456H 0.47 tolerated(0.26) benign(0.009) TCGA-UY-A9PH-01 X 110406159 110406159 C G PAK3 Missense_Mutation p.S198C 0.24 deleterious(0.03) benign(0.029) TCGA-UY-A9PH-01 X 151935717 151935717 G C MAGEA3 Missense_Mutation p.I150M 0.32 deleterious(0.02) probably_damaging(0.987) TCGA-UY-A9PH-01 X 153209864 153209864 C T RENBP Missense_Mutation p.E12K 0.30 deleterious(0.02) benign(0.061) TCGA-UY-A9PH-01 X 153762290 153762290 C G G6PD Missense_Mutation p.E274Q 0.58 tolerated(0.43) benign(0.003) TCGA-UY-A9PH-01 X 18259470 18259470 G C SCML2 Silent p.L668L 0.22 TCGA-UY-A9PH-01 X 322194 322194 G A PPP2R3B Silent p.F152F 0.11 TCGA-UY-A9PH-01 X 41206690 41206690 G A DDX3X Missense_Mutation p.R632K 0.30 tolerated(0.29) unknown(0) TCGA-UY-A9PH-01 X 48933376 48933376 G C AF196779.12 Missense_Mutation p.P83A 0.67 deleterious(0.02) possibly_damaging(0.549) TCGA-UY-A9PH-01 X 71426404 71426404 G A ERCC6L Missense_Mutation p.S738F 0.28 tolerated(0.05) benign(0.041) TCGA-XF-A8HB-01 10 105363420 105363420 G A SH3PXD2A Missense_Mutation p.R491W 0.49 deleterious(0) probably_damaging(1) TCGA-XF-A8HB-01 10 73055580 73055580 C G UNC5B Missense_Mutation p.L730V 0.37 tolerated(0.15) benign(0.004) TCGA-XF-A8HB-01 10 88768876 88768876 C T RP11-96C23.10 3'Flank 0.48 TCGA-XF-A8HB-01 10 93031399 93031399 G A PCGF5 Missense_Mutation p.R223Q 0.48 tolerated(0.33) benign(0.001) TCGA-XF-A8HB-01 10 93619334 93619334 A G TNKS2 Silent p.Q1070Q 0.48 TCGA-XF-A8HB-01 11 119185263 119185263 G A MCAM Silent p.N165N 0.41 TCGA-XF-A8HB-01 11 119206643 119206643 C T RNF26 Nonsense_Mutation p.R271* 0.44 TCGA-XF-A8HB-01 11 1269566 1269566 T G MUC5B Missense_Mutation p.M3819R 0.36 unknown(0) TCGA-XF-A8HB-01 11 31671690 31671690 G A ELP4 Missense_Mutation p.R355Q 0.43 tolerated(0.11) benign(0.187) TCGA-XF-A8HB-01 11 67074400 67074400 C T SSH3 Missense_Mutation p.T144M 0.40 tolerated(0.14) benign(0.086) TCGA-XF-A8HB-01 11 71260311 71260311 C T KRTAP5-9 3'UTR 0.38 TCGA-XF-A8HB-01 11 92086485 92086485 G C FAT3 Missense_Mutation p.E403Q 0.50 probably_damaging(0.922) TCGA-XF-A8HB-01 12 1003786 1003786 G A WNK1 Silent p.K1856K 0.43 TCGA-XF-A8HB-01 12 108686574 108686574 G T CMKLR1 Missense_Mutation p.L56M 0.50 deleterious(0.01) benign(0.14) TCGA-XF-A8HB-01 12 49094845 49094845 T C CCNT1 Silent p.Q128Q 0.51 TCGA-XF-A8HB-01 12 56669802 56669802 G A CS Missense_Mutation p.R256C 0.39 deleterious(0) probably_damaging(0.939) TCGA-XF-A8HB-01 12 56676692 56676692 C A CS Missense_Mutation p.E117D 0.47 deleterious(0) probably_damaging(0.979) TCGA-XF-A8HB-01 12 57081762 57081762 C T PTGES3 Intron 0.31 TCGA-XF-A8HB-01 13 101936368 101936368 C T NALCN Missense_Mutation p.M350I 0.49 tolerated(1) benign(0.003) TCGA-XF-A8HB-01 13 25901618 25901618 G A NUPL1 Missense_Mutation p.A401T 0.04 deleterious(0) probably_damaging(0.984) TCGA-XF-A8HB-01 13 46053170 46053170 C G COG3 Missense_Mutation p.Q118E 0.43 tolerated(1) benign(0.004) TCGA-XF-A8HB-01 13 77673021 77673021 C T MYCBP2 Silent p.K2718K 0.49 TCGA-XF-A8HB-01 14 102552428 102552428 C A HSP90AA1 Missense_Mutation p.D188Y 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A8HB-01 14 106236119 106236119 G A IGHG3 Missense_Mutation p.T229M 0.31 deleterious(0) probably_damaging(1) TCGA-XF-A8HB-01 14 20444666 20444666 T C OR4K15 Missense_Mutation p.L330P 0.44 deleterious(0.02) benign(0.031) TCGA-XF-A8HB-01 14 20666038 20666038 C A OR11G2 Missense_Mutation p.L182I 0.51 deleterious(0.03) possibly_damaging(0.702) TCGA-XF-A8HB-01 14 20852647 20852647 C G TEP1 Missense_Mutation p.G1081A 0.43 deleterious(0.02) possibly_damaging(0.821) TCGA-XF-A8HB-01 15 43109245 43109245 G A TTBK2 Silent p.N196N 0.45 TCGA-XF-A8HB-01 15 43502607 43502607 G A EPB42 Missense_Mutation p.R224C 0.37 deleterious(0.04) benign(0.013) TCGA-XF-A8HB-01 15 44912485 44912485 G T SPG11 Missense_Mutation p.Q913K 0.48 tolerated(0.46) benign(0.003) TCGA-XF-A8HB-01 15 59409120 59409120 G A CCNB2 Missense_Mutation p.G277R 0.47 deleterious(0) possibly_damaging(0.811) TCGA-XF-A8HB-01 15 72862578 72862578 C T ARIH1 Missense_Mutation p.R363C 0.42 deleterious(0.02) benign(0.117) TCGA-XF-A8HB-01 16 5041903 5041903 G A SEC14L5 Missense_Mutation p.R180H 0.30 deleterious(0.02) possibly_damaging(0.73) TCGA-XF-A8HB-01 16 71571058 71571058 C T CHST4 Missense_Mutation p.P160S 0.40 tolerated(0.09) probably_damaging(0.973) TCGA-XF-A8HB-01 16 89804602 89804602 C T ZNF276 Missense_Mutation p.P598L 0.61 tolerated(0.36) benign(0.003) TCGA-XF-A8HB-01 17 10403993 10403993 C T MYH1 Missense_Mutation p.R1272Q 0.37 tolerated(0.16) possibly_damaging(0.848) TCGA-XF-A8HB-01 17 11726292 11726292 A C DNAH9 Missense_Mutation p.K3063Q 0.45 benign(0.001) TCGA-XF-A8HB-01 17 25937178 25937178 G A KSR1 Missense_Mutation p.E656K 0.46 deleterious(0) possibly_damaging(0.545) TCGA-XF-A8HB-01 17 72480340 72480340 C A CD300A 3'UTR 0.56 TCGA-XF-A8HB-01 17 78346333 78346333 G C RNF213 Missense_Mutation p.E4184Q 0.11 benign(0.327) TCGA-XF-A8HB-01 18 28710331 28710331 G A DSC1 3'UTR 0.25 TCGA-XF-A8HB-01 18 74659517 74659517 C T ZNF236 Missense_Mutation p.S1606L 0.43 deleterious(0.01) benign(0.102) TCGA-XF-A8HB-01 18 76754241 76754241 C T SALL3 Silent p.N750N 0.52 TCGA-XF-A8HB-01 19 17535794 17535794 G A MVB12A Missense_Mutation p.V272I 0.43 tolerated(0.64) benign(0.005) TCGA-XF-A8HB-01 19 3819086 3819086 C T ZFR2 Missense_Mutation p.E630K 0.91 deleterious(0.01) benign(0.133) TCGA-XF-A8HB-01 19 49464356 49464356 C G BAX 3'UTR 0.11 TCGA-XF-A8HB-01 19 55247286 55247286 G T KIR3DL3 Splice_Site p.X352_splice 0.89 TCGA-XF-A8HB-01 19 55994288 55994288 G A ZNF628 Silent p.A576A 0.26 TCGA-XF-A8HB-01 19 6477252 6477252 G T DENND1C Missense_Mutation p.P164T 0.47 tolerated(0.08) benign(0.059) TCGA-XF-A8HB-01 19 8563283 8563283 C T PRAM1 Missense_Mutation p.R470Q 0.50 tolerated(0.22) benign(0.094) TCGA-XF-A8HB-01 1 11307706 11307706 C T MTOR Missense_Mutation p.A401T 0.06 tolerated(0.11) probably_damaging(0.996) TCGA-XF-A8HB-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.47 tolerated(0.06) benign(0.006) TCGA-XF-A8HB-01 1 13001229 13001229 C T PRAMEF6 Missense_Mutation p.E152K 0.09 deleterious(0) benign(0.075) TCGA-XF-A8HB-01 1 152636900 152636900 G A LCE2D Missense_Mutation p.G107R 0.13 tolerated_low_confidence(0.17) unknown(0) TCGA-XF-A8HB-01 1 152882559 152882559 G C IVL Missense_Mutation p.E96Q 0.12 tolerated_low_confidence(0.11) unknown(0) TCGA-XF-A8HB-01 1 158687127 158687127 C T OR6K3 Missense_Mutation p.R260H 0.37 tolerated(0.05) possibly_damaging(0.458) TCGA-XF-A8HB-01 1 167935955 167935955 G A DCAF6 Missense_Mutation p.R83K 0.48 tolerated(0.69) possibly_damaging(0.87) TCGA-XF-A8HB-01 1 207085114 207085114 G A FAIM3 Missense_Mutation p.T224M 0.43 deleterious(0.02) possibly_damaging(0.891) TCGA-XF-A8HB-01 1 23751216 23751216 C G TCEA3 5'UTR 0.41 TCGA-XF-A8HB-01 1 237921018 237921018 C T RYR2 Missense_Mutation p.A3756V 0.53 benign(0.027) TCGA-XF-A8HB-01 1 54059983 54059983 C T GLIS1 Missense_Mutation p.R198H 0.27 tolerated(0.18) probably_damaging(0.98) TCGA-XF-A8HB-01 20 44047495 44047495 G C PIGT Silent p.V123V 0.66 TCGA-XF-A8HB-01 2 120858335 120858335 G C EPB41L5 Missense_Mutation p.V428L 0.59 tolerated(0.15) benign(0.014) TCGA-XF-A8HB-01 2 152466388 152466388 A G NEB Missense_Mutation p.W4089R 0.37 probably_damaging(0.993) TCGA-XF-A8HB-01 2 1926807 1926807 C T MYT1L Missense_Mutation p.R245Q 0.47 tolerated_low_confidence(0.29) benign(0.041) TCGA-XF-A8HB-01 2 74596297 74596297 C G DCTN1 Missense_Mutation p.E543D 0.43 tolerated(0.11) probably_damaging(0.972) TCGA-XF-A8HB-01 3 32207511 32207511 G A GPD1L 3'UTR 0.67 TCGA-XF-A8HB-01 3 50608512 50608512 C T HEMK1 5'UTR 0.40 TCGA-XF-A8HB-01 3 93611967 93611967 C G PROS1 Splice_Site p.X322_splice 0.23 TCGA-XF-A8HB-01 4 114267107 114267107 C A ANK2 Missense_Mutation p.P1434T 0.44 probably_damaging(0.998) TCGA-XF-A8HB-01 4 156841106 156841106 T C TDO2 Silent p.C395C 0.92 TCGA-XF-A8HB-01 4 96036852 96036852 A G BMPR1B Missense_Mutation p.H118R 0.07 tolerated(0.34) benign(0.001) TCGA-XF-A8HB-01 5 112177526 112177526 G C APC Missense_Mutation p.D2079H 0.21 probably_damaging(0.999) TCGA-XF-A8HB-01 5 156635910 156635910 C T ITK Missense_Mutation p.T50M 0.43 tolerated(0.23) benign(0.017) TCGA-XF-A8HB-01 5 179248011 179248011 C T SQSTM1 Silent p.F25F 0.36 TCGA-XF-A8HB-01 5 26885787 26885787 G A CDH9 Silent p.I606I 0.38 TCGA-XF-A8HB-01 5 89781410 89781410 G A POLR3G Missense_Mutation p.R9H 0.49 deleterious(0.01) possibly_damaging(0.806) TCGA-XF-A8HB-01 6 117663680 117663680 C G ROS1 Missense_Mutation p.E1518Q 0.28 tolerated(0.18) possibly_damaging(0.623) TCGA-XF-A8HB-01 6 157522387 157522387 G A ARID1B Silent p.A1553A 0.92 TCGA-XF-A8HB-01 6 30459319 30459319 G A HLA-E Missense_Mutation p.A298T 0.90 deleterious_low_confidence(0) benign(0.08) TCGA-XF-A8HB-01 6 69349253 69349253 G T BAI3 Missense_Mutation p.C229F 0.24 deleterious(0) probably_damaging(0.974) TCGA-XF-A8HB-01 6 72967944 72967944 G A RIMS1 Missense_Mutation p.G963R 0.27 deleterious(0.01) probably_damaging(1) TCGA-XF-A8HB-01 6 99991279 99991279 A C CCNC 3'UTR 1.00 TCGA-XF-A8HB-01 7 117431220 117431220 C G CTTNBP2 Missense_Mutation p.R677T 0.46 tolerated(0.16) benign(0.14) TCGA-XF-A8HB-01 7 30538499 30538499 G C GGCT Missense_Mutation p.Q115E 0.06 tolerated(0.22) benign(0.002) TCGA-XF-A8HB-01 7 31746913 31746913 G C PPP1R17 3'UTR 0.32 TCGA-XF-A8HB-01 7 38534090 38534090 C T AMPH Silent p.L81L 0.49 TCGA-XF-A8HB-01 7 47847885 47847885 C T PKD1L1 Missense_Mutation p.R2596Q 0.07 tolerated(1) benign(0.005) TCGA-XF-A8HB-01 8 105263855 105263855 G A RIMS2 Missense_Mutation p.R1286H 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-XF-A8HB-01 8 36644832 36644832 C A KCNU1 Missense_Mutation p.F68L 0.24 tolerated(0.53) benign(0.001) TCGA-XF-A8HB-01 8 6371333 6371333 C A ANGPT2 Silent p.L355L 0.05 TCGA-XF-A8HB-01 9 111843168 111843168 A G TMEM245 Missense_Mutation p.F467S 0.47 deleterious(0) possibly_damaging(0.561) TCGA-XF-A8HB-01 9 34656880 34656880 G A IL11RA Silent p.G102G 0.32 TCGA-XF-A8HB-01 9 5457271 5457271 G A CD274 Missense_Mutation p.R82K 0.49 tolerated(0.39) benign(0.028) TCGA-XF-A8HB-01 X 101139612 101139612 G A ZMAT1 Missense_Mutation p.P263S 0.46 tolerated(0.32) benign(0.007) TCGA-XF-A8HB-01 X 107924156 107924156 G A COL4A5 Missense_Mutation p.E1353K 0.43 benign(0.44) TCGA-XF-A8HB-01 X 134654831 134654831 G A DDX26B 5'UTR 0.42 TCGA-XF-A8HB-01 X 54783734 54783734 C T ITIH6 Missense_Mutation p.E925K 0.53 tolerated(0.15) benign(0.012) TCGA-XF-A8HC-01 10 100017562 100017562 C T LOXL4 Splice_Site p.X369_splice 0.45 TCGA-XF-A8HC-01 10 101379814 101379814 G A SLC25A28 Silent p.I93I 0.64 TCGA-XF-A8HC-01 10 102256922 102256922 G A SEC31B Silent p.C702C 0.45 TCGA-XF-A8HC-01 10 104183167 104183167 G A CUEDC2 3'UTR 0.43 TCGA-XF-A8HC-01 10 11531129 11531129 G C USP6NL Silent p.L229L 0.35 TCGA-XF-A8HC-01 10 118423652 118423652 G A C10orf82 3'UTR 0.39 TCGA-XF-A8HC-01 10 120833321 120833321 C T EIF3A Missense_Mutation p.D60N 0.65 deleterious(0.03) unknown(0) TCGA-XF-A8HC-01 10 127455185 127455185 G C MMP21 3'UTR 0.40 TCGA-XF-A8HC-01 10 127455384 127455384 G C MMP21 Missense_Mutation p.F519L 0.41 deleterious(0) probably_damaging(0.991) TCGA-XF-A8HC-01 10 51465353 51465353 G A AGAP7 Missense_Mutation p.P368L 0.43 tolerated(0.13) benign(0.009) TCGA-XF-A8HC-01 10 5493825 5493825 T C NET1 Silent p.A96A 0.29 TCGA-XF-A8HC-01 10 70333601 70333601 G A TET1 Silent p.Q502Q 0.68 TCGA-XF-A8HC-01 10 75553929 75553929 G C ZSWIM8 Missense_Mutation p.E884Q 0.42 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HC-01 10 75562357 75562357 G A NDST2 Intron 0.46 TCGA-XF-A8HC-01 10 89280892 89280892 C G MINPP1 Missense_Mutation p.Q345E 0.58 tolerated(0.23) benign(0.155) TCGA-XF-A8HC-01 11 110450078 110450078 C T ARHGAP20 3'UTR 0.26 TCGA-XF-A8HC-01 11 111747254 111747254 G T FDXACB1 Missense_Mutation p.Q215K 0.26 tolerated(0.26) benign(0.006) TCGA-XF-A8HC-01 11 123601329 123601329 C T ZNF202 Missense_Mutation p.V90M 0.37 deleterious(0) probably_damaging(1) TCGA-XF-A8HC-01 11 45939006 45939006 C T PEX16 Intron 0.50 TCGA-XF-A8HC-01 11 46907947 46907947 C T LRP4 Missense_Mutation p.D785N 0.39 tolerated(0.68) benign(0.016) TCGA-XF-A8HC-01 11 49597872 49597872 G A RP11-707M1.1 RNA 0.24 TCGA-XF-A8HC-01 11 5624776 5624776 G A TRIM6 Silent p.V106V 0.28 TCGA-XF-A8HC-01 11 611769 611769 G A PHRF1 Missense_Mutation p.E1647K 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.81) TCGA-XF-A8HC-01 11 64360933 64360933 C T SLC22A12 Missense_Mutation p.T188M 0.30 deleterious(0.01) possibly_damaging(0.88) TCGA-XF-A8HC-01 11 65427603 65427603 G A RELA Missense_Mutation p.P140L 0.35 deleterious(0) probably_damaging(1) TCGA-XF-A8HC-01 11 68216531 68216531 C A LRP5 Nonsense_Mutation p.S1614* 0.29 TCGA-XF-A8HC-01 11 86267729 86267729 C G ME3 Missense_Mutation p.M111I 0.24 tolerated(0.1) benign(0.005) TCGA-XF-A8HC-01 11 92532076 92532076 C G FAT3 Missense_Mutation p.S1966C 0.36 benign(0.372) TCGA-XF-A8HC-01 11 94731766 94731766 A C KDM4D Silent p.A410A 0.30 TCGA-XF-A8HC-01 12 100551822 100551822 G A AC010203.1 5'Flank 0.25 TCGA-XF-A8HC-01 12 110968448 110968448 C T RAD9B Intron 0.28 TCGA-XF-A8HC-01 12 111351063 111351063 G A MYL2 Silent p.L114L 0.77 TCGA-XF-A8HC-01 12 113737434 113737434 C T SLC8B1 3'UTR 0.50 TCGA-XF-A8HC-01 12 117968760 117968760 C T KSR2 Silent p.V596V 0.28 TCGA-XF-A8HC-01 12 12629737 12629737 T A DUSP16 3'UTR 0.45 TCGA-XF-A8HC-01 12 15370492 15370492 C G RERG 5'UTR 0.38 TCGA-XF-A8HC-01 12 22637775 22637775 T A C2CD5 Missense_Mutation p.Y469F 0.47 deleterious(0) possibly_damaging(0.715) TCGA-XF-A8HC-01 12 50571325 50571325 G A LIMA1 Missense_Mutation p.S602F 0.28 deleterious(0) probably_damaging(0.928) TCGA-XF-A8HC-01 12 50571404 50571404 G A LIMA1 Silent p.L576L 0.31 TCGA-XF-A8HC-01 12 56492372 56492372 G A ERBB3 Intron 0.31 TCGA-XF-A8HC-01 12 56492373 56492373 G T ERBB3 Intron 0.31 TCGA-XF-A8HC-01 12 56492665 56492665 G A ERBB3 Missense_Mutation p.D939N 0.34 deleterious(0) probably_damaging(1) TCGA-XF-A8HC-01 12 56495419 56495419 G A ERBB3 Silent p.R1203R 0.27 TCGA-XF-A8HC-01 12 56495789 56495789 G T ERBB3 Missense_Mutation p.D1327Y 0.28 deleterious(0) probably_damaging(0.956) TCGA-XF-A8HC-01 12 56515042 56515042 G A ZC3H10 Silent p.P232P 0.31 TCGA-XF-A8HC-01 12 56874134 56874134 C T GLS2 Missense_Mutation p.D74N 0.20 tolerated(0.11) benign(0.064) TCGA-XF-A8HC-01 12 86373496 86373496 G A MGAT4C Silent p.D336D 0.37 TCGA-XF-A8HC-01 13 103703779 103703779 C T SLC10A2 Missense_Mutation p.G197R 0.16 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HC-01 13 109365058 109365058 G A MYO16 Silent p.S92S 0.36 TCGA-XF-A8HC-01 13 114514875 114514875 G A TMEM255B Silent p.%3D 0.29 TCGA-XF-A8HC-01 13 67799799 67799799 G T PCDH9 Missense_Mutation p.P925Q 0.52 deleterious(0) possibly_damaging(0.73) TCGA-XF-A8HC-01 14 105410091 105410091 G A AHNAK2 Silent p.V3899V 0.30 TCGA-XF-A8HC-01 14 106110903 106110903 G A IGHG2 Silent p.N75N 0.32 TCGA-XF-A8HC-01 14 23745102 23745102 C T HOMEZ Silent p.L445L 0.21 TCGA-XF-A8HC-01 14 24845720 24845720 A T NFATC4 Missense_Mutation p.R822S 0.18 tolerated_low_confidence(0.46) possibly_damaging(0.641) TCGA-XF-A8HC-01 14 52794244 52794244 G A PTGER2 3'UTR 0.24 TCGA-XF-A8HC-01 14 59791152 59791152 C T DAAM1 Silent p.H323H 0.21 TCGA-XF-A8HC-01 14 61186987 61186987 C T SIX4 Missense_Mutation p.G347E 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HC-01 14 65017700 65017700 G C PPP1R36 Missense_Mutation p.R44T 0.26 tolerated(0.07) benign(0.288) TCGA-XF-A8HC-01 14 68252740 68252740 C T ZFYVE26 Splice_Site p.X1047_splice 0.28 TCGA-XF-A8HC-01 14 73407040 73407040 G A DCAF4 Silent p.E102E 0.33 TCGA-XF-A8HC-01 14 77715711 77715711 G A TMEM63C Missense_Mutation p.E650K 0.32 tolerated(1) possibly_damaging(0.531) TCGA-XF-A8HC-01 14 94722832 94722832 C G PPP4R4 Missense_Mutation p.S634C 0.34 deleterious(0) possibly_damaging(0.779) TCGA-XF-A8HC-01 15 41796157 41796157 C T LTK 3'UTR 0.45 TCGA-XF-A8HC-01 15 41796391 41796391 C G LTK Missense_Mutation p.E800Q 0.27 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-XF-A8HC-01 15 60795790 60795790 C T RORA Missense_Mutation p.R373H 0.30 tolerated(0.15) benign(0.033) TCGA-XF-A8HC-01 15 63449624 63449624 C T RPS27L 5'UTR 0.32 TCGA-XF-A8HC-01 15 76016580 76016580 G A ODF3L1 Missense_Mutation p.A14T 0.35 deleterious_low_confidence(0.04) benign(0.133) TCGA-XF-A8HC-01 15 89449884 89449884 G A MFGE8 Silent p.F171F 0.39 TCGA-XF-A8HC-01 16 1812938 1812938 G T MAPK8IP3 Missense_Mutation p.S609I 0.47 tolerated(0.09) benign(0.329) TCGA-XF-A8HC-01 16 2129600 2129600 G A TSC2 Silent p.P1109P 0.42 TCGA-XF-A8HC-01 16 22157632 22157632 C T VWA3A Missense_Mutation p.R936C 0.33 tolerated(0.32) benign(0.022) TCGA-XF-A8HC-01 16 29937124 29937124 C T KCTD13 Silent p.L77L 0.09 TCGA-XF-A8HC-01 16 57473142 57473142 G A CIAPIN1 Missense_Mutation p.R88W 0.45 deleterious(0.03) benign(0.018) TCGA-XF-A8HC-01 16 71718413 71718413 G A PHLPP2 Missense_Mutation p.A234V 0.07 deleterious(0.03) possibly_damaging(0.656) TCGA-XF-A8HC-01 16 82182319 82182319 C T MPHOSPH6 3'UTR 0.51 TCGA-XF-A8HC-01 16 83158989 83158989 G A CDH13 Splice_Site p.X170_splice 0.80 TCGA-XF-A8HC-01 17 10448812 10448812 G C MYH2 Nonsense_Mutation p.S119* 0.40 TCGA-XF-A8HC-01 17 18158536 18158536 G A FLII Silent p.V96V 0.33 TCGA-XF-A8HC-01 17 19091383 19091383 G A SNORD3A RNA 0.06 TCGA-XF-A8HC-01 17 19641492 19641492 G A ALDH3A1 3'UTR 0.27 TCGA-XF-A8HC-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.49 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HC-01 17 39670413 39670413 C A KRT15 Intron 0.30 TCGA-XF-A8HC-01 17 42151595 42151595 C T G6PC3 Nonsense_Mutation p.Q96* 0.53 TCGA-XF-A8HC-01 17 42273761 42273761 C T ATXN7L3 Intron 0.48 TCGA-XF-A8HC-01 17 43183029 43183029 G C NMT1 3'UTR 0.49 TCGA-XF-A8HC-01 17 44788344 44788344 C T NSF Nonsense_Mutation p.Q496* 0.35 TCGA-XF-A8HC-01 17 47022113 47022113 C T SNF8 5'UTR 0.73 TCGA-XF-A8HC-01 17 5035625 5035625 G A USP6 Intron 0.37 TCGA-XF-A8HC-01 17 52992031 52992031 C T TOM1L1 Missense_Mutation p.S177F 0.23 tolerated(0.06) benign(0.019) TCGA-XF-A8HC-01 17 57058148 57058148 C T PPM1E Missense_Mutation p.S675L 0.19 deleterious_low_confidence(0.03) benign(0.108) TCGA-XF-A8HC-01 17 66878802 66878802 C A ABCA8 Nonsense_Mutation p.E1216* 0.17 TCGA-XF-A8HC-01 17 7225069 7225069 G A NEURL4 Missense_Mutation p.S970F 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A8HC-01 17 7329756 7329756 G C C17orf74 Missense_Mutation p.R149T 0.38 deleterious(0.04) possibly_damaging(0.765) TCGA-XF-A8HC-01 17 73725482 73725482 G T ITGB4 Missense_Mutation p.G235C 0.65 deleterious(0) probably_damaging(1) TCGA-XF-A8HC-01 17 74568791 74568791 G A ST6GALNAC2 Silent p.F199F 0.25 TCGA-XF-A8HC-01 18 22806167 22806167 T C ZNF521 Missense_Mutation p.N572S 0.40 tolerated(0.47) benign(0.093) TCGA-XF-A8HC-01 18 50705432 50705432 G A DCC Missense_Mutation p.E507K 0.40 tolerated(0.54) benign(0.094) TCGA-XF-A8HC-01 19 10157434 10157434 C T C3P1 RNA 0.16 TCGA-XF-A8HC-01 19 12767781 12767781 G C MAN2B1 Silent p.L503L 0.19 TCGA-XF-A8HC-01 19 17571663 17571663 A G NXNL1 Missense_Mutation p.S6P 0.22 tolerated(0.14) benign(0.445) TCGA-XF-A8HC-01 19 19136962 19136962 G A SUGP2 Silent p.L65L 0.28 TCGA-XF-A8HC-01 19 35758810 35758810 G A LSR 3'UTR 0.49 TCGA-XF-A8HC-01 19 36606504 36606504 C T TBCB Silent p.F14F 0.44 TCGA-XF-A8HC-01 19 37129644 37129649 ATCTAT - ZNF461 In_Frame_Del p.H533_R534del 0.24 TCGA-XF-A8HC-01 19 37619746 37619746 G A ZNF420 Missense_Mutation p.R618K 0.29 tolerated(1) benign(0) TCGA-XF-A8HC-01 19 37643219 37643219 C T ZNF585A Missense_Mutation p.G473R 0.18 deleterious(0.02) probably_damaging(1) TCGA-XF-A8HC-01 19 41086356 41086356 G A SHKBP1 Missense_Mutation p.R176Q 0.27 tolerated(0.09) benign(0.157) TCGA-XF-A8HC-01 19 41939529 41939529 G A ATP5SL Nonsense_Mutation p.Q122* 0.22 TCGA-XF-A8HC-01 19 436646 436646 G A SHC2 Missense_Mutation p.A253V 0.24 deleterious(0) probably_damaging(0.986) TCGA-XF-A8HC-01 19 4433440 4433440 G A CHAF1A Silent p.T859T 0.19 TCGA-XF-A8HC-01 19 49013354 49013354 G A LMTK3 Missense_Mutation p.S125L 0.13 probably_damaging(0.924) TCGA-XF-A8HC-01 19 49230096 49230096 G A RASIP1 Silent p.L691L 0.16 TCGA-XF-A8HC-01 19 53762045 53762045 C T VN1R2 Silent p.I139I 0.16 TCGA-XF-A8HC-01 19 54872646 54872646 C T LAIR1 Missense_Mutation p.E81K 0.21 tolerated(0.42) probably_damaging(0.973) TCGA-XF-A8HC-01 19 56369603 56369603 G A NLRP4 Missense_Mutation p.V282M 0.31 tolerated(0.12) benign(0.01) TCGA-XF-A8HC-01 19 58101720 58101720 C T ZIK1 Missense_Mutation p.R181W 0.42 deleterious(0) benign(0.003) TCGA-XF-A8HC-01 1 111854862 111854862 C A CHIA Missense_Mutation p.P36T 0.28 deleterious(0.01) benign(0.244) TCGA-XF-A8HC-01 1 114429156 114429156 G A BCL2L15 Intron 0.43 TCGA-XF-A8HC-01 1 117311358 117311358 C T CD2 Missense_Mutation p.P337S 0.24 deleterious(0.01) benign(0.163) TCGA-XF-A8HC-01 1 154201159 154201159 C T UBAP2L Silent p.V79V 0.12 TCGA-XF-A8HC-01 1 155188238 155188238 G A MTX1 3'Flank 0.09 TCGA-XF-A8HC-01 1 156180346 156180346 C T SLC25A44 3'UTR 0.25 TCGA-XF-A8HC-01 1 1563701 1563701 G A MIB2 Silent p.K745K 0.33 TCGA-XF-A8HC-01 1 158517444 158517444 C T OR6Y1 Missense_Mutation p.G151E 0.12 tolerated(0.05) possibly_damaging(0.456) TCGA-XF-A8HC-01 1 160786537 160786537 A G LY9 Missense_Mutation p.E409G 0.07 tolerated(1) benign(0) TCGA-XF-A8HC-01 1 16358707 16358707 T A CLCNKA Missense_Mutation p.I589N 0.29 deleterious(0.04) benign(0.297) TCGA-XF-A8HC-01 1 169798411 169798411 C T C1orf112 Silent p.L379L 0.46 TCGA-XF-A8HC-01 1 169951906 169951906 C G KIFAP3 Missense_Mutation p.D537H 0.40 deleterious(0) probably_damaging(0.954) TCGA-XF-A8HC-01 1 17552613 17552613 C T PADI1 Silent p.P204P 0.29 TCGA-XF-A8HC-01 1 205031034 205031034 G A CNTN2 Missense_Mutation p.D339N 0.51 deleterious(0.02) benign(0.098) TCGA-XF-A8HC-01 1 22166366 22166366 C T HSPG2 Missense_Mutation p.E3220K 0.29 possibly_damaging(0.739) TCGA-XF-A8HC-01 1 39800218 39800218 C T MACF1 Intron 0.23 TCGA-XF-A8HC-01 1 44086821 44086821 G A PTPRF Missense_Mutation p.R1858H 0.10 deleterious(0) probably_damaging(1) TCGA-XF-A8HC-01 1 87538679 87538679 C T HS2ST1 Missense_Mutation p.R63W 0.44 tolerated(0.05) possibly_damaging(0.702) TCGA-XF-A8HC-01 20 18143283 18143283 G A CSRP2BP Silent p.P455P 0.20 TCGA-XF-A8HC-01 20 19981400 19981400 C G RIN2 Silent p.L885L 0.62 TCGA-XF-A8HC-01 21 46281079 46281079 C A PTTG1IP Missense_Mutation p.W92C 0.55 deleterious(0) probably_damaging(0.94) TCGA-XF-A8HC-01 2 120643373 120643373 G A PTPN4 Missense_Mutation p.G197D 0.37 deleterious(0.02) probably_damaging(1) TCGA-XF-A8HC-01 2 133486397 133486397 C T NCKAP5 Missense_Mutation p.G1858R 0.57 tolerated(0.13) benign(0.243) TCGA-XF-A8HC-01 2 170177313 170177313 G C LRP2 Nonsense_Mutation p.S54* 0.50 TCGA-XF-A8HC-01 2 175245431 175245431 C T CIR1 Missense_Mutation p.E89K 0.41 tolerated(0.08) unknown(0) TCGA-XF-A8HC-01 2 179486212 179486212 G T TTN Silent p.V15113V 0.62 TCGA-XF-A8HC-01 2 220366724 220366724 C T GMPPA Missense_Mutation p.R132C 0.91 deleterious(0.03) benign(0.004) TCGA-XF-A8HC-01 2 33442649 33442649 C T LTBP1 Nonsense_Mutation p.Q578* 0.60 TCGA-XF-A8HC-01 2 53897815 53897815 G A ASB3 Missense_Mutation p.S496F 0.33 deleterious(0.02) benign(0.396) TCGA-XF-A8HC-01 2 55535974 55535974 C G CCDC88A Missense_Mutation p.G1452A 0.53 tolerated(0.38) benign(0.167) TCGA-XF-A8HC-01 3 10206638 10206638 C T IRAK2 5'UTR 0.47 TCGA-XF-A8HC-01 3 111888105 111888106 - T SLC9C1 Frame_Shift_Ins p.M997Nfs*21 0.11 TCGA-XF-A8HC-01 3 130452501 130452501 G A PIK3R4 Silent p.L447L 0.44 TCGA-XF-A8HC-01 3 138022387 138022387 C T NME9 Missense_Mutation p.S236N 0.17 tolerated(1) benign(0.005) TCGA-XF-A8HC-01 3 146171848 146171848 C A PLSCR2 Missense_Mutation p.V215L 0.33 tolerated(0.07) possibly_damaging(0.779) TCGA-XF-A8HC-01 3 183469969 183469969 C T YEATS2 Missense_Mutation p.P360S 0.35 tolerated(0.13) benign(0.003) TCGA-XF-A8HC-01 3 194790315 194790315 C T XXYLT1 3'UTR 0.30 TCGA-XF-A8HC-01 3 197427405 197427405 G A KIAA0226 Intron 0.26 TCGA-XF-A8HC-01 3 39228860 39228860 C T XIRP1 Missense_Mutation p.V693M 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HC-01 3 52360823 52360823 C G DNAH1 Silent p.L218L 0.40 TCGA-XF-A8HC-01 3 5257652 5257652 C G EDEM1 3'UTR 0.48 TCGA-XF-A8HC-01 3 69168406 69168406 T A LMOD3 Missense_Mutation p.N367I 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HC-01 4 106746865 106746865 C T GSTCD Missense_Mutation p.R480C 0.36 deleterious(0.02) probably_damaging(0.93) TCGA-XF-A8HC-01 4 146031552 146031552 G A ABCE1 Missense_Mutation p.R190Q 0.86 tolerated(0.27) benign(0.015) TCGA-XF-A8HC-01 4 177071680 177071680 G A WDR17 Missense_Mutation p.S771N 0.78 tolerated(0.05) probably_damaging(0.989) TCGA-XF-A8HC-01 4 77095448 77095448 G A SCARB2 Silent p.F281F 0.45 TCGA-XF-A8HC-01 5 135382992 135382992 G C TGFBI Silent p.L218L 0.41 TCGA-XF-A8HC-01 5 175535625 175535625 G C FAM153B Missense_Mutation p.E217Q 0.23 tolerated_low_confidence(0.25) possibly_damaging(0.607) TCGA-XF-A8HC-01 5 40964936 40964936 G A C7 Missense_Mutation p.E615K 0.28 deleterious(0.02) possibly_damaging(0.517) TCGA-XF-A8HC-01 5 41015499 41015499 G C MROH2B Missense_Mutation p.S989C 0.26 tolerated(0.44) possibly_damaging(0.774) TCGA-XF-A8HC-01 5 44809192 44809192 G A MRPS30 Missense_Mutation p.R43Q 0.36 tolerated(0.2) benign(0.421) TCGA-XF-A8HC-01 5 59064165 59064165 C T PDE4D Intron 0.48 TCGA-XF-A8HC-01 5 82833052 82833052 C A VCAN Nonsense_Mutation p.Y1410* 0.35 TCGA-XF-A8HC-01 5 82837384 82837384 C T VCAN Silent p.V2854V 0.37 TCGA-XF-A8HC-01 5 9066720 9066720 C T SEMA5A Silent p.L704L 0.15 TCGA-XF-A8HC-01 6 128330355 128330355 C A PTPRK Silent p.V751V 0.07 TCGA-XF-A8HC-01 6 134493334 134493334 C T SGK1 Silent p.P356P 0.33 TCGA-XF-A8HC-01 6 151265699 151265699 G T MTHFD1L Missense_Mutation p.R506S 0.60 deleterious(0) probably_damaging(0.995) TCGA-XF-A8HC-01 6 161536275 161536275 G C MAP3K4 Missense_Mutation p.E1583Q 0.53 tolerated(0.33) possibly_damaging(0.781) TCGA-XF-A8HC-01 6 30308133 30308133 C T TRIM39 Silent p.I296I 0.17 TCGA-XF-A8HC-01 6 30879502 30879502 C T GTF2H4 Silent p.F261F 0.22 TCGA-XF-A8HC-01 6 36652125 36652132 CGGCGAGG - CDKN1A Frame_Shift_Del p.R83Pfs*3 0.27 TCGA-XF-A8HC-01 6 42162372 42162372 G - GUCA1B Frame_Shift_Del p.R63Efs*20 0.16 TCGA-XF-A8HC-01 6 44197339 44197339 G A SLC29A1 Missense_Mutation p.R42H 0.17 deleterious(0.04) possibly_damaging(0.576) TCGA-XF-A8HC-01 6 53385669 53385669 T C GCLC Missense_Mutation p.N118S 0.23 tolerated(0.71) probably_damaging(0.937) TCGA-XF-A8HC-01 6 56857310 56857310 G A BEND6 Silent p.R85R 0.19 TCGA-XF-A8HC-01 6 57398136 57398136 C T PRIM2 Missense_Mutation p.S280F 0.11 deleterious(0) probably_damaging(0.978) TCGA-XF-A8HC-01 6 70042859 70042859 C T BAI3 Silent p.S1049S 0.29 TCGA-XF-A8HC-01 6 93953184 93953184 G T EPHA7 Missense_Mutation p.A986E 0.41 tolerated(0.26) probably_damaging(0.998) TCGA-XF-A8HC-01 7 100061628 100061628 G A C7orf61 Silent p.F7F 0.21 TCGA-XF-A8HC-01 7 100244446 100244446 C T ACTL6B Silent p.S315S 0.17 TCGA-XF-A8HC-01 7 100866817 100866817 C T ZNHIT1 Nonsense_Mutation p.Q85* 0.21 TCGA-XF-A8HC-01 7 104752914 104752914 C T KMT2E Nonsense_Mutation p.Q1571* 0.14 TCGA-XF-A8HC-01 7 121650596 121650596 C G PTPRZ1 Missense_Mutation p.S499C 0.25 tolerated(0.17) possibly_damaging(0.503) TCGA-XF-A8HC-01 7 150325200 150325200 G A GIMAP6 Silent p.F162F 0.21 TCGA-XF-A8HC-01 7 94050355 94050355 G A COL1A2 Missense_Mutation p.R777H 0.33 unknown(0) TCGA-XF-A8HC-01 7 97780717 97780717 C T LMTK2 Missense_Mutation p.R134C 0.39 deleterious(0) probably_damaging(0.995) TCGA-XF-A8HC-01 7 98550970 98550970 G A TRRAP Missense_Mutation p.V1875M 0.19 possibly_damaging(0.701) TCGA-XF-A8HC-01 8 131070247 131070247 C T ASAP1 Missense_Mutation p.E1090K 0.35 tolerated(0.19) benign(0.025) TCGA-XF-A8HC-01 8 144943371 144943371 C T EPPK1 Missense_Mutation p.E1351K 0.29 possibly_damaging(0.67) TCGA-XF-A8HC-01 8 145697610 145697610 C G KIFC2 Silent p.L525L 0.24 TCGA-XF-A8HC-01 8 145698065 145698065 C G KIFC2 Missense_Mutation p.P613A 0.29 tolerated(0.53) possibly_damaging(0.817) TCGA-XF-A8HC-01 8 91081275 91081275 C T CALB1 Missense_Mutation p.R108K 0.21 tolerated(0.09) probably_damaging(0.994) TCGA-XF-A8HC-01 9 140707614 140707614 G A EHMT1 Silent p.R1008R 0.26 TCGA-XF-A8HC-01 9 5769402 5769402 G A KIAA1432 Intron 0.27 TCGA-XF-A8HC-01 9 70871869 70871869 G A CBWD3 Missense_Mutation p.E155K 0.16 deleterious(0.02) possibly_damaging(0.861) TCGA-XF-A8HC-01 9 94495531 94495531 G A ROR2 Silent p.I270I 0.60 TCGA-XF-A8HC-01 X 118222942 118222942 T C KIAA1210 Missense_Mutation p.T751A 0.72 tolerated(1) benign(0.013) TCGA-XF-A8HC-01 X 133921530 133921530 G T FAM122B Missense_Mutation p.P157T 0.15 deleterious(0.03) benign(0.007) TCGA-XF-A8HC-01 X 2928185 2928185 C G ARSH Missense_Mutation p.I69M 0.33 deleterious(0) benign(0.424) TCGA-XF-A8HC-01 X 3228072 3228072 G A MXRA5 Silent p.I2724I 0.64 TCGA-XF-A8HD-01 10 115636654 115636654 G A NHLRC2 Missense_Mutation p.D236N 0.45 tolerated(0.64) benign(0.002) TCGA-XF-A8HD-01 10 124172433 124172433 C T PLEKHA1 Intron 0.45 TCGA-XF-A8HD-01 10 128973702 128973702 C T FAM196A Missense_Mutation p.E320K 0.32 tolerated(0.24) benign(0.023) TCGA-XF-A8HD-01 10 134981766 134981766 G A KNDC1 Missense_Mutation p.E104K 0.31 deleterious(0) possibly_damaging(0.811) TCGA-XF-A8HD-01 10 18276412 18276412 C A SLC39A12 Nonsense_Mutation p.Y367* 0.12 TCGA-XF-A8HD-01 10 27306568 27306568 C T ANKRD26 Missense_Mutation p.E1457K 0.09 tolerated(0.11) benign(0.217) TCGA-XF-A8HD-01 10 46222883 46222883 G A FAM21C Missense_Mutation p.D8N 0.24 deleterious_low_confidence(0.04) benign(0.3) TCGA-XF-A8HD-01 10 55587259 55587259 C T PCDH15 Missense_Mutation p.A1421T 0.48 tolerated(0.35) benign(0.045) TCGA-XF-A8HD-01 10 58118470 58118470 G A ZWINT Silent p.L213L 0.43 TCGA-XF-A8HD-01 10 6157603 6157603 C G RBM17 3'UTR 0.08 TCGA-XF-A8HD-01 10 61830231 61830231 C G ANK3 Missense_Mutation p.E3470Q 0.09 benign(0.087) TCGA-XF-A8HD-01 10 72292466 72292466 C G PALD1 Missense_Mutation p.I241M 0.13 deleterious(0.04) possibly_damaging(0.73) TCGA-XF-A8HD-01 10 72293737 72293737 C A PALD1 Missense_Mutation p.F310L 0.17 deleterious(0) possibly_damaging(0.891) TCGA-XF-A8HD-01 10 96447999 96447999 G A CYP2C18 Missense_Mutation p.R150H 0.39 tolerated(0.59) benign(0.008) TCGA-XF-A8HD-01 10 98989535 98989535 C G ARHGAP19 Missense_Mutation p.E461Q 0.22 deleterious(0.02) possibly_damaging(0.904) TCGA-XF-A8HD-01 10 98989596 98989596 C G ARHGAP19 Missense_Mutation p.K440N 0.24 deleterious(0.04) benign(0.008) TCGA-XF-A8HD-01 10 98989608 98989608 C T ARHGAP19 Missense_Mutation p.M436I 0.23 tolerated(0.99) benign(0) TCGA-XF-A8HD-01 11 102822823 102822823 G A MMP13 Silent p.L239L 0.39 TCGA-XF-A8HD-01 11 104900533 104900533 C T CASP1 Missense_Mutation p.E241K 0.14 tolerated(0.09) benign(0.223) TCGA-XF-A8HD-01 11 106647219 106647219 C G GUCY1A2 Missense_Mutation p.L594F 0.16 deleterious(0.03) possibly_damaging(0.622) TCGA-XF-A8HD-01 11 108384187 108384187 G C EXPH5 Missense_Mutation p.L683V 0.29 tolerated(0.28) benign(0.212) TCGA-XF-A8HD-01 11 108384390 108384390 G T EXPH5 Missense_Mutation p.S615Y 0.34 tolerated(1) benign(0.001) TCGA-XF-A8HD-01 11 108384639 108384639 G A EXPH5 Missense_Mutation p.S532L 0.33 tolerated(0.06) benign(0.059) TCGA-XF-A8HD-01 11 111637011 111637011 G A PPP2R1B Silent p.I25I 0.08 TCGA-XF-A8HD-01 11 113194099 113194099 G T TTC12 Nonsense_Mutation p.E50* 0.16 TCGA-XF-A8HD-01 11 113702673 113702673 C G USP28 Missense_Mutation p.E268Q 0.40 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 11 118373927 118373927 C G KMT2A Missense_Mutation p.F2440L 0.17 benign(0.021) TCGA-XF-A8HD-01 11 118374970 118374970 C G KMT2A Missense_Mutation p.S2788C 0.09 possibly_damaging(0.625) TCGA-XF-A8HD-01 11 118375019 118375019 C T KMT2A Silent p.L2804L 0.11 TCGA-XF-A8HD-01 11 118375024 118375024 C A KMT2A Nonsense_Mutation p.S2806* 0.13 TCGA-XF-A8HD-01 11 118376403 118376403 C G KMT2A Missense_Mutation p.P3266A 0.18 benign(0.001) TCGA-XF-A8HD-01 11 118376903 118376903 C T KMT2A Silent p.L3432L 0.19 TCGA-XF-A8HD-01 11 118377352 118377352 C G KMT2A Nonsense_Mutation p.S3582* 0.10 TCGA-XF-A8HD-01 11 122930649 122930649 C G HSPA8 Missense_Mutation p.E218Q 0.18 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-XF-A8HD-01 11 125859609 125859609 G C CDON Missense_Mutation p.S899C 0.29 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 11 126133927 126133927 T C SRPR Missense_Mutation p.I601V 0.28 tolerated(0.2) benign(0.371) TCGA-XF-A8HD-01 11 129794834 129794834 G A PRDM10 Silent p.I611I 0.31 TCGA-XF-A8HD-01 11 130343292 130343292 C G ADAMTS15 Missense_Mutation p.S810C 0.13 tolerated(0.06) benign(0.246) TCGA-XF-A8HD-01 11 13513925 13513925 G A PTH 3'UTR 0.21 TCGA-XF-A8HD-01 11 18010238 18010238 G C SERGEF Missense_Mutation p.F250L 0.39 deleterious(0.02) benign(0.263) TCGA-XF-A8HD-01 11 1856668 1856668 C T SYT8 Silent p.R93R 0.44 TCGA-XF-A8HD-01 11 193139 193139 C G SCGB1C1 Missense_Mutation p.L14V 0.28 tolerated(0.2) benign(0.003) TCGA-XF-A8HD-01 11 20648296 20648296 A C SLC6A5 Missense_Mutation p.I435L 0.24 deleterious(0) probably_damaging(0.955) TCGA-XF-A8HD-01 11 27078830 27078830 G C BBOX1 Missense_Mutation p.R101T 0.20 deleterious(0) possibly_damaging(0.868) TCGA-XF-A8HD-01 11 281234 281234 G C NLRP6 Missense_Mutation p.Q500H 0.35 tolerated(0.14) benign(0.008) TCGA-XF-A8HD-01 11 31327921 31327921 G C DCDC1 Missense_Mutation p.S150C 0.24 deleterious(0.02) probably_damaging(0.922) TCGA-XF-A8HD-01 11 33083117 33083117 G C TCP11L1 Missense_Mutation p.E273Q 0.38 tolerated(0.27) benign(0.009) TCGA-XF-A8HD-01 11 4112585 4112585 C G STIM1 Missense_Mutation p.Q539E 0.31 tolerated_low_confidence(1) benign(0) TCGA-XF-A8HD-01 11 46439563 46439563 G A AMBRA1 Missense_Mutation p.R916W 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XF-A8HD-01 11 47314119 47314119 G A MADD Silent p.V1129V 0.19 TCGA-XF-A8HD-01 11 47350770 47350770 G A MADD 3'UTR 0.30 TCGA-XF-A8HD-01 11 47360168 47360168 C T MYBPC3 Silent p.T737T 0.21 TCGA-XF-A8HD-01 11 47368979 47368979 C G MYBPC3 Missense_Mutation p.K301N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HD-01 11 55111641 55111641 C T OR4A16 Missense_Mutation p.S322F 0.34 tolerated_low_confidence(0.12) benign(0.108) TCGA-XF-A8HD-01 11 55657461 55657461 G C TRIM51 Missense_Mutation p.E269Q 0.08 tolerated(0.15) benign(0.034) TCGA-XF-A8HD-01 11 55657486 55657486 G C TRIM51 Missense_Mutation p.G277A 0.07 deleterious(0.01) benign(0.314) TCGA-XF-A8HD-01 11 55861422 55861422 C T OR8I2 Silent p.I213I 0.18 TCGA-XF-A8HD-01 11 6007675 6007675 G T OR52L1 Silent p.I162I 0.16 TCGA-XF-A8HD-01 11 607281 607281 G A PHRF1 Missense_Mutation p.G608R 0.22 tolerated(1) benign(0.032) TCGA-XF-A8HD-01 11 62287741 62287741 G A AHNAK Silent p.I4716I 0.17 TCGA-XF-A8HD-01 11 6458683 6458683 G A HPX Silent p.P230P 0.20 TCGA-XF-A8HD-01 11 64854237 64854237 G C ZFPL1 Missense_Mutation p.D152H 0.20 deleterious(0.03) benign(0.34) TCGA-XF-A8HD-01 11 65063399 65063399 G T POLA2 Missense_Mutation p.A529S 0.19 tolerated(0.1) possibly_damaging(0.837) TCGA-XF-A8HD-01 11 67269467 67269467 C T PITPNM1 Missense_Mutation p.R169Q 0.42 deleterious(0) possibly_damaging(0.599) TCGA-XF-A8HD-01 11 68367906 68367906 G A PPP6R3 Silent p.P712P 0.17 TCGA-XF-A8HD-01 11 6977654 6977654 G T ZNF215 Missense_Mutation p.M482I 0.16 tolerated(0.39) benign(0.003) TCGA-XF-A8HD-01 11 70178179 70178179 G C PPFIA1 Missense_Mutation p.Q397H 0.17 deleterious(0) probably_damaging(0.992) TCGA-XF-A8HD-01 11 70281235 70281235 C G CTTN Intron 0.12 TCGA-XF-A8HD-01 11 73611462 73611462 G C PAAF1 Missense_Mutation p.G177R 0.20 deleterious(0.02) benign(0.041) TCGA-XF-A8HD-01 11 76062849 76062849 C G PRKRIR Missense_Mutation p.D449H 0.38 deleterious(0) probably_damaging(0.928) TCGA-XF-A8HD-01 11 76063041 76063041 C T PRKRIR Missense_Mutation p.E385K 0.39 tolerated(0.47) benign(0.027) TCGA-XF-A8HD-01 11 77386194 77386194 C T RSF1 Missense_Mutation p.R1150Q 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-XF-A8HD-01 11 77885009 77885009 C T KCTD21 Missense_Mutation p.E198K 0.14 tolerated(0.17) benign(0.052) TCGA-XF-A8HD-01 11 77934526 77934526 C T GAB2 Missense_Mutation p.R500Q 0.38 tolerated(0.35) benign(0.012) TCGA-XF-A8HD-01 11 840300 840300 C T POLR2L 3'UTR 0.43 TCGA-XF-A8HD-01 11 93454686 93454686 G A KIAA1731 Intron 0.21 TCGA-XF-A8HD-01 11 94908719 94908719 C G SESN3 Missense_Mutation p.E445D 0.33 deleterious(0.04) benign(0.422) TCGA-XF-A8HD-01 12 103696309 103696309 G A C12orf42 Silent p.I220I 0.26 TCGA-XF-A8HD-01 12 108051308 108051308 C T BTBD11 Missense_Mutation p.S1043L 0.47 tolerated(0.76) benign(0.328) TCGA-XF-A8HD-01 12 109935646 109935646 C G UBE3B Nonsense_Mutation p.S246* 0.16 TCGA-XF-A8HD-01 12 111758213 111758213 C T CUX2 Silent p.Y800Y 0.28 TCGA-XF-A8HD-01 12 113546007 113546007 G A RASAL1 Silent p.I466I 0.21 TCGA-XF-A8HD-01 12 114390349 114390349 C T RBM19 Missense_Mutation p.R323Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-XF-A8HD-01 12 121437262 121437262 C G HNF1A Intron 0.13 TCGA-XF-A8HD-01 12 122294293 122294293 C T HPD Silent p.V87V 0.53 TCGA-XF-A8HD-01 12 122674879 122674879 G A LRRC43 Missense_Mutation p.E289K 0.15 deleterious(0) probably_damaging(0.997) TCGA-XF-A8HD-01 12 122674881 122674881 G T LRRC43 Missense_Mutation p.E289D 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-XF-A8HD-01 12 122692818 122692818 G T DIABLO 3'UTR 0.19 TCGA-XF-A8HD-01 12 125397283 125397283 C T UBC Silent p.Q345Q 0.16 TCGA-XF-A8HD-01 12 129299469 129299469 G A SLC15A4 Silent p.V231V 0.39 TCGA-XF-A8HD-01 12 130832712 130832712 G A PIWIL1 Missense_Mutation p.D240N 0.16 tolerated(0.29) benign(0.002) TCGA-XF-A8HD-01 12 133219249 133219249 C A POLE Nonsense_Mutation p.E1599* 0.11 TCGA-XF-A8HD-01 12 14019007 14019007 C T GRIN2B Missense_Mutation p.D46N 0.15 tolerated(1) benign(0.006) TCGA-XF-A8HD-01 12 14649257 14649257 C T ATF7IP Nonsense_Mutation p.R1125* 0.34 TCGA-XF-A8HD-01 12 24365428 24365428 C A MIR920 RNA 0.17 TCGA-XF-A8HD-01 12 30834612 30834612 G A IPO8 Nonsense_Mutation p.Q155* 0.18 TCGA-XF-A8HD-01 12 31254835 31254835 C T DDX11 Silent p.F707F 0.26 TCGA-XF-A8HD-01 12 32145564 32145564 G C KIAA1551 3'UTR 0.12 TCGA-XF-A8HD-01 12 40645036 40645036 G C LRRK2 Missense_Mutation p.E321Q 0.33 tolerated(0.12) possibly_damaging(0.816) TCGA-XF-A8HD-01 12 43925874 43925874 G A ADAMTS20 Missense_Mutation p.S193F 0.34 tolerated(0.08) benign(0.037) TCGA-XF-A8HD-01 12 4737304 4737304 C T AKAP3 Missense_Mutation p.R255K 0.14 tolerated(1) benign(0.004) TCGA-XF-A8HD-01 12 49444166 49444166 C A KMT2D Nonsense_Mutation p.E1069* 0.14 TCGA-XF-A8HD-01 12 49445035 49445035 C A KMT2D Nonsense_Mutation p.E811* 0.10 TCGA-XF-A8HD-01 12 53097151 53097151 G C KRT77 Missense_Mutation p.S23C 0.14 tolerated(0.09) unknown(0) TCGA-XF-A8HD-01 12 54367348 54367348 C A HOXC11 Missense_Mutation p.S108Y 0.12 deleterious(0.01) probably_damaging(0.914) TCGA-XF-A8HD-01 12 54967198 54967198 C G PDE1B Missense_Mutation p.S299C 0.15 deleterious(0) benign(0.403) TCGA-XF-A8HD-01 12 56565159 56565159 C T SMARCC2 Missense_Mutation p.R717Q 0.14 deleterious(0.01) benign(0.238) TCGA-XF-A8HD-01 12 6422815 6422815 C T PLEKHG6 Silent p.L53L 0.42 TCGA-XF-A8HD-01 12 6623536 6623536 G C NCAPD2 Missense_Mutation p.L231F 0.35 deleterious(0.01) possibly_damaging(0.714) TCGA-XF-A8HD-01 12 66605322 66605322 A T IRAK3 Missense_Mutation p.E178V 0.30 tolerated(0.21) possibly_damaging(0.832) TCGA-XF-A8HD-01 12 6928613 6928613 C G CD4 3'UTR 0.27 TCGA-XF-A8HD-01 12 72425109 72425109 C T TPH2 Silent p.I412I 0.17 TCGA-XF-A8HD-01 12 7522075 7522075 C G CD163L1 Missense_Mutation p.G1306A 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 12 82783702 82783702 G A METTL25 Splice_Site p.X177_splice 0.29 TCGA-XF-A8HD-01 12 8688688 8688688 C G CLEC4E Silent p.L162L 0.13 TCGA-XF-A8HD-01 12 91348416 91348416 C G CCER1 Missense_Mutation p.W35S 0.21 deleterious(0.05) possibly_damaging(0.904) TCGA-XF-A8HD-01 12 94631497 94631497 G A PLXNC1 Missense_Mutation p.V680M 0.16 deleterious(0.03) benign(0.305) TCGA-XF-A8HD-01 12 94806104 94806104 C T CCDC41 Missense_Mutation p.E55K 0.21 deleterious(0) benign(0.281) TCGA-XF-A8HD-01 12 993856 993856 C G WNK1 Missense_Mutation p.H1296D 0.12 deleterious(0.01) possibly_damaging(0.824) TCGA-XF-A8HD-01 13 111562995 111562995 C T ANKRD10 Silent p.L111L 0.25 TCGA-XF-A8HD-01 13 20224190 20224190 G A MPHOSPH8 Missense_Mutation p.E456K 0.34 deleterious_low_confidence(0.04) benign(0.025) TCGA-XF-A8HD-01 13 31232022 31232022 C T USPL1 Missense_Mutation p.S603F 0.19 tolerated(0.06) benign(0.178) TCGA-XF-A8HD-01 13 32978528 32978528 C G N4BP2L1 Missense_Mutation p.E135Q 0.32 tolerated(0.28) benign(0.173) TCGA-XF-A8HD-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.41 TCGA-XF-A8HD-01 13 49037972 49037972 G C RB1 Splice_Site p.X737_splice 0.42 TCGA-XF-A8HD-01 13 77738588 77738588 C A MYCBP2 Splice_Site p.X2145_splice 0.17 TCGA-XF-A8HD-01 13 99040684 99040684 G A FARP1 Silent p.L269L 0.19 TCGA-XF-A8HD-01 13 99061765 99061765 G C FARP1 Missense_Mutation p.E530Q 0.13 deleterious(0.02) benign(0.429) TCGA-XF-A8HD-01 14 101438483 101438483 G A SNORD114-14 RNA 0.24 TCGA-XF-A8HD-01 14 103438400 103438400 C G CDC42BPB Silent p.L580L 0.38 TCGA-XF-A8HD-01 14 105222085 105222085 G A SIVA1 Silent p.P79P 0.37 TCGA-XF-A8HD-01 14 20389658 20389658 T C OR4K5 Missense_Mutation p.V298A 0.12 deleterious(0) benign(0.004) TCGA-XF-A8HD-01 14 23345193 23345193 G A LRP10 Missense_Mutation p.D346N 0.15 tolerated(1) benign(0.113) TCGA-XF-A8HD-01 14 38678915 38678915 C A SSTR1 Silent p.L107L 0.16 TCGA-XF-A8HD-01 14 42356212 42356212 G C LRFN5 Missense_Mutation p.L128F 0.32 deleterious(0.01) probably_damaging(1) TCGA-XF-A8HD-01 14 56078953 56078961 AAAAAGAAA - KTN1 In_Frame_Del p.K63_K65del 0.15 TCGA-XF-A8HD-01 14 61190001 61190001 G A SIX4 Silent p.L264L 0.17 TCGA-XF-A8HD-01 14 64469489 64469489 G C SYNE2 Missense_Mutation p.E1280Q 0.11 benign(0.023) TCGA-XF-A8HD-01 14 65260545 65260545 G A SPTB Silent p.I612I 0.11 TCGA-XF-A8HD-01 14 67779317 67779317 C T MPP5 Missense_Mutation p.S372F 0.16 deleterious(0) probably_damaging(0.912) TCGA-XF-A8HD-01 14 72941386 72941386 G A RGS6 Silent p.K224K 0.15 TCGA-XF-A8HD-01 14 74042093 74042093 C G ACOT2 Missense_Mutation p.P443R 0.09 tolerated(0.09) benign(0.016) TCGA-XF-A8HD-01 15 101718836 101718836 T C CHSY1 Missense_Mutation p.D389G 0.25 deleterious(0.03) benign(0.023) TCGA-XF-A8HD-01 15 29400588 29400588 G C APBA2 Missense_Mutation p.G678A 0.14 deleterious(0.01) possibly_damaging(0.886) TCGA-XF-A8HD-01 15 33954529 33954529 G A RYR3 Missense_Mutation p.G1600S 0.25 possibly_damaging(0.826) TCGA-XF-A8HD-01 15 35185915 35185915 G C AQR Missense_Mutation p.I840M 0.17 deleterious(0.01) possibly_damaging(0.756) TCGA-XF-A8HD-01 15 40093282 40093282 C G GPR176 3'UTR 0.26 TCGA-XF-A8HD-01 15 42681261 42681261 C T CAPN3 Silent p.I256I 0.23 TCGA-XF-A8HD-01 15 42734538 42734538 G A ZNF106 Nonsense_Mutation p.Q1143* 0.28 TCGA-XF-A8HD-01 15 50935655 50935655 T C TRPM7 Silent p.V139V 0.26 TCGA-XF-A8HD-01 15 51981533 51981533 G C SCG3 Missense_Mutation p.E220Q 0.10 tolerated_low_confidence(0.11) probably_damaging(0.92) TCGA-XF-A8HD-01 15 52708421 52708421 C T MYO5A Missense_Mutation p.R178Q 0.24 deleterious(0) probably_damaging(0.948) TCGA-XF-A8HD-01 15 54542582 54542582 G C UNC13C Missense_Mutation p.E1130Q 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.883) TCGA-XF-A8HD-01 15 55931846 55931846 A G PRTG Missense_Mutation p.L773P 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A8HD-01 15 63907990 63907990 G A HERC1 Nonsense_Mutation p.R4691* 0.32 TCGA-XF-A8HD-01 15 65489834 65489834 G A CILP Silent p.N930N 0.25 TCGA-XF-A8HD-01 15 72191080 72191080 C G MYO9A Missense_Mutation p.R1255T 0.15 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-XF-A8HD-01 15 74235250 74235250 G A LOXL1 Silent p.Q386Q 0.17 TCGA-XF-A8HD-01 15 75673974 75673974 C A SIN3A Missense_Mutation p.D1090Y 0.18 deleterious(0) probably_damaging(0.968) TCGA-XF-A8HD-01 15 90245065 90245065 G C WDR93 Missense_Mutation p.E30Q 0.17 deleterious(0) probably_damaging(0.971) TCGA-XF-A8HD-01 15 90245206 90245206 G C WDR93 Missense_Mutation p.E77Q 0.30 tolerated(0.13) benign(0.098) TCGA-XF-A8HD-01 15 91016983 91016983 C G IQGAP1 Missense_Mutation p.Q796E 0.20 tolerated(0.98) benign(0.071) TCGA-XF-A8HD-01 16 10032050 10032050 G A GRIN2A Missense_Mutation p.P258L 0.29 deleterious(0) probably_damaging(0.99) TCGA-XF-A8HD-01 16 12121207 12121207 C G SNX29 Silent p.A51A 0.26 TCGA-XF-A8HD-01 16 1265300 1265300 G A CACNA1H Missense_Mutation p.E1700K 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-XF-A8HD-01 16 15609215 15609215 G C C16orf45 Missense_Mutation p.E54Q 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-XF-A8HD-01 16 16139747 16139747 C G ABCC1 Missense_Mutation p.F365L 0.23 tolerated(1) benign(0.015) TCGA-XF-A8HD-01 16 18861604 18861604 G C SMG1 Silent p.L1746L 0.20 TCGA-XF-A8HD-01 16 20810640 20810640 G T ERI2 Missense_Mutation p.A226D 0.14 deleterious(0) probably_damaging(0.987) TCGA-XF-A8HD-01 16 23593649 23593649 C G NDUFAB1 Missense_Mutation p.E143Q 0.21 deleterious(0.03) possibly_damaging(0.9) TCGA-XF-A8HD-01 16 24582671 24582671 G C RBBP6 Missense_Mutation p.E1428D 0.29 tolerated_low_confidence(0.69) unknown(0) TCGA-XF-A8HD-01 16 2764183 2764183 C T PRSS27 Missense_Mutation p.E131K 0.37 tolerated(0.1) benign(0.013) TCGA-XF-A8HD-01 16 3349210 3349210 C G TIGD7 Missense_Mutation p.E469Q 0.14 tolerated(0.11) benign(0.007) TCGA-XF-A8HD-01 16 3350006 3350006 C G TIGD7 Missense_Mutation p.K203N 0.20 tolerated(0.34) benign(0.002) TCGA-XF-A8HD-01 16 4164562 4164562 G A ADCY9 Silent p.I294I 0.29 TCGA-XF-A8HD-01 16 53338120 53338120 G A CHD9 Missense_Mutation p.E2068K 0.21 benign(0.251) TCGA-XF-A8HD-01 16 57060530 57060530 G A NLRC5 Missense_Mutation p.D559N 0.25 deleterious(0) possibly_damaging(0.887) TCGA-XF-A8HD-01 16 57938692 57938692 G A CNGB1 Silent p.F860F 0.19 TCGA-XF-A8HD-01 16 62055281 62055281 G A CDH8 Silent p.L9L 0.16 TCGA-XF-A8HD-01 16 633160 633160 C T PIGQ Silent p.H603H 0.22 TCGA-XF-A8HD-01 16 66918282 66918282 C G PDP2 Nonsense_Mutation p.S32* 0.15 TCGA-XF-A8HD-01 16 67984329 67984329 C T SLC12A4 Missense_Mutation p.V510I 0.26 tolerated(0.16) probably_damaging(0.998) TCGA-XF-A8HD-01 16 70516075 70516075 C G COG4 Missense_Mutation p.E642Q 0.08 deleterious(0.01) possibly_damaging(0.567) TCGA-XF-A8HD-01 16 70843700 70843700 C G HYDIN Missense_Mutation p.E4957Q 0.17 possibly_damaging(0.859) TCGA-XF-A8HD-01 16 71012828 71012828 C G HYDIN Missense_Mutation p.E1543Q 0.11 possibly_damaging(0.827) TCGA-XF-A8HD-01 16 71674874 71674874 G C MARVELD3 Missense_Mutation p.E393Q 0.19 deleterious(0.02) possibly_damaging(0.61) TCGA-XF-A8HD-01 16 71674887 71674887 G C MARVELD3 Missense_Mutation p.S397T 0.17 deleterious(0.02) benign(0.176) TCGA-XF-A8HD-01 16 84224818 84224818 C T ADAD2 5'UTR 0.38 TCGA-XF-A8HD-01 16 89599005 89599005 G C SPG7 Missense_Mutation p.E429Q 0.29 tolerated(0.13) probably_damaging(0.995) TCGA-XF-A8HD-01 17 12656240 12656240 G A MYOCD Silent p.L545L 0.24 TCGA-XF-A8HD-01 17 17129521 17129521 C A FLCN Missense_Mutation p.R122L 0.48 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HD-01 17 17754204 17754204 C T TOM1L2 Intron 0.34 TCGA-XF-A8HD-01 17 18670082 18670082 C T FBXW10 Silent p.I537I 0.17 TCGA-XF-A8HD-01 17 27047593 27047593 C G RPL23A Intron 0.24 TCGA-XF-A8HD-01 17 30551819 30551819 C G RHOT1 3'UTR 0.23 TCGA-XF-A8HD-01 17 3572578 3572578 C T EMC6 Silent p.L46L 0.32 TCGA-XF-A8HD-01 17 37565142 37565142 G A MED1 Missense_Mutation p.S1111L 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-XF-A8HD-01 17 37762246 37762246 G C NEUROD2 Missense_Mutation p.L203V 0.17 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HD-01 17 38140709 38140709 G A PSMD3 Missense_Mutation p.R128Q 0.10 tolerated(0.1) benign(0.397) TCGA-XF-A8HD-01 17 39580544 39580544 G A KRT37 Missense_Mutation p.P78S 0.15 tolerated(0.43) benign(0.09) TCGA-XF-A8HD-01 17 39580838 39580838 G A KRT37 5'Flank 0.08 TCGA-XF-A8HD-01 17 39684338 39684338 G A KRT19 Silent p.S54S 0.19 TCGA-XF-A8HD-01 17 42266543 42266543 C T TMUB2 Silent p.S63S 0.29 TCGA-XF-A8HD-01 17 4496454 4496454 C T SMTNL2 Missense_Mutation p.P240S 0.13 tolerated(0.46) benign(0.011) TCGA-XF-A8HD-01 17 45787963 45787963 G C TBKBP1 Missense_Mutation p.D607H 0.13 deleterious(0) unknown(0) TCGA-XF-A8HD-01 17 46990207 46990207 G C UBE2Z Missense_Mutation p.L134F 0.03 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 17 47236525 47236525 C G B4GALNT2 Missense_Mutation p.L269V 0.15 deleterious(0) probably_damaging(0.962) TCGA-XF-A8HD-01 17 48216947 48216947 C A PPP1R9B Splice_Site p.X621_splice 0.21 TCGA-XF-A8HD-01 17 48619045 48619045 C T EPN3 Silent p.P525P 0.16 TCGA-XF-A8HD-01 17 5012972 5012972 G T ZNF232 Missense_Mutation p.S72Y 0.29 tolerated(0.53) possibly_damaging(0.781) TCGA-XF-A8HD-01 17 5352144 5352144 C T DHX33 Silent p.R600R 0.21 TCGA-XF-A8HD-01 17 58133498 58133498 G T HEATR6 Missense_Mutation p.S727Y 0.14 deleterious(0) possibly_damaging(0.854) TCGA-XF-A8HD-01 17 60072608 60072608 C T MED13 Missense_Mutation p.D696N 0.30 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HD-01 17 61838316 61838316 C G CCDC47 Silent p.L231L 0.34 TCGA-XF-A8HD-01 17 63154460 63154460 C T RGS9 Silent p.L68L 0.19 TCGA-XF-A8HD-01 17 64873534 64873534 C T CACNG5 Silent p.V28V 0.14 TCGA-XF-A8HD-01 17 6513428 6513428 C A KIAA0753 Missense_Mutation p.R533I 0.13 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HD-01 17 67014674 67014674 G A ABCA9 Silent p.L883L 0.29 TCGA-XF-A8HD-01 17 72915716 72915716 G T USH1G Silent p.A405A 0.08 TCGA-XF-A8HD-01 17 72999999 72999999 G T CDR2L Nonsense_Mutation p.E410* 0.36 TCGA-XF-A8HD-01 17 73491024 73491024 C T KIAA0195 Silent p.I879I 0.16 TCGA-XF-A8HD-01 17 73824970 73824970 C T UNC13D Missense_Mutation p.E1017K 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.41 tolerated(0.11) benign(0.308) TCGA-XF-A8HD-01 17 76535851 76535851 G A DNAH17 Silent p.L882L 0.11 TCGA-XF-A8HD-01 17 76867003 76867003 C T TIMP2 Missense_Mutation p.G106E 0.33 deleterious(0.02) probably_damaging(1) TCGA-XF-A8HD-01 17 77707408 77707408 G A ENPP7 Nonsense_Mutation p.W119* 0.23 TCGA-XF-A8HD-01 17 78262438 78262438 G C RNF213 Missense_Mutation p.D273H 0.06 possibly_damaging(0.533) TCGA-XF-A8HD-01 17 79219467 79219467 G A SLC38A10 Silent p.N1083N 0.28 TCGA-XF-A8HD-01 17 79804454 79804454 C A P4HB Nonsense_Mutation p.E303* 0.17 TCGA-XF-A8HD-01 17 8166292 8166292 G C PFAS Missense_Mutation p.G464A 0.16 deleterious(0) probably_damaging(0.992) TCGA-XF-A8HD-01 18 13666553 13666553 C G FAM210A Missense_Mutation p.E249Q 0.09 deleterious(0.01) probably_damaging(0.98) TCGA-XF-A8HD-01 18 21119727 21119727 G A NPC1 Intron 0.09 TCGA-XF-A8HD-01 18 2750074 2750074 G A SMCHD1 Missense_Mutation p.E1321K 0.16 tolerated(0.63) benign(0.006) TCGA-XF-A8HD-01 18 34324034 34324034 G T FHOD3 Nonsense_Mutation p.E1132* 0.07 TCGA-XF-A8HD-01 18 60242709 60242709 C T ZCCHC2 Missense_Mutation p.S1132L 0.50 deleterious(0) probably_damaging(0.996) TCGA-XF-A8HD-01 18 63489382 63489382 C G CDH7 Missense_Mutation p.Q231E 0.10 deleterious(0.05) probably_damaging(0.981) TCGA-XF-A8HD-01 18 77802162 77802162 G A RBFA Silent p.L173L 0.53 TCGA-XF-A8HD-01 19 1046343 1046343 C T ABCA7 Silent p.G520G 0.34 TCGA-XF-A8HD-01 19 1116078 1116078 C T SBNO2 Silent p.Q609Q 0.27 TCGA-XF-A8HD-01 19 11537767 11537767 C G CCDC151 Missense_Mutation p.E180Q 0.52 tolerated(0.06) possibly_damaging(0.523) TCGA-XF-A8HD-01 19 13386707 13386707 C T CACNA1A Missense_Mutation p.D1316N 0.15 benign(0.042) TCGA-XF-A8HD-01 19 15284990 15284990 G A NOTCH3 Missense_Mutation p.S1542L 0.33 deleterious(0.01) possibly_damaging(0.558) TCGA-XF-A8HD-01 19 15472583 15472583 C G AKAP8 Missense_Mutation p.L451F 0.13 deleterious(0.03) probably_damaging(0.987) TCGA-XF-A8HD-01 19 17104363 17104363 C G CPAMD8 Missense_Mutation p.E424Q 0.23 tolerated(0.32) benign(0.059) TCGA-XF-A8HD-01 19 17305930 17305930 G A MYO9B Missense_Mutation p.E1232K 0.19 tolerated(0.78) benign(0.021) TCGA-XF-A8HD-01 19 17440973 17440973 C T ANO8 Missense_Mutation p.E412K 0.27 tolerated(0.07) possibly_damaging(0.681) TCGA-XF-A8HD-01 19 20727509 20727509 C T ZNF737 Silent p.K500K 0.33 TCGA-XF-A8HD-01 19 20807801 20807801 G T ZNF626 Missense_Mutation p.F294L 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-XF-A8HD-01 19 2116236 2116236 G C AP3D1 Missense_Mutation p.F681L 0.13 tolerated(0.05) benign(0.391) TCGA-XF-A8HD-01 19 21299711 21299711 G C ZNF714 Missense_Mutation p.E81Q 0.25 deleterious(0.04) benign(0.372) TCGA-XF-A8HD-01 19 35758508 35758508 G C LSR Silent p.V595V 0.33 TCGA-XF-A8HD-01 19 37129951 37129951 C G ZNF461 Missense_Mutation p.Q432H 0.19 tolerated(0.08) benign(0.006) TCGA-XF-A8HD-01 19 38055435 38055435 C T ZNF571 3'UTR 0.17 TCGA-XF-A8HD-01 19 38126415 38126415 G A ZFP30 Missense_Mutation p.L343F 0.16 tolerated(0.54) probably_damaging(0.999) TCGA-XF-A8HD-01 19 38189290 38189290 C T ZNF607 Missense_Mutation p.R581Q 0.34 deleterious(0.02) possibly_damaging(0.861) TCGA-XF-A8HD-01 19 39214815 39214815 G T ACTN4 Missense_Mutation p.D571Y 0.20 deleterious(0) benign(0.215) TCGA-XF-A8HD-01 19 39329235 39329235 G C HNRNPL Silent p.V453V 0.22 TCGA-XF-A8HD-01 19 39734743 39734743 G A IFNL3 Silent p.L105L 0.13 TCGA-XF-A8HD-01 19 40998930 40998930 C G SPTBN4 Missense_Mutation p.L186V 0.30 deleterious(0) benign(0) TCGA-XF-A8HD-01 19 41381512 41381512 C T CYP2A7 3'UTR 0.20 TCGA-XF-A8HD-01 19 44377179 44377179 G A ZNF404 Missense_Mutation p.S396L 0.17 tolerated(0.09) possibly_damaging(0.871) TCGA-XF-A8HD-01 19 46176164 46176164 G A GIPR Nonsense_Mutation p.W112* 0.11 TCGA-XF-A8HD-01 19 49223974 49223974 G T RASIP1 3'UTR 0.15 TCGA-XF-A8HD-01 19 51986512 51986512 G A CEACAM18 Silent p.L366L 0.12 TCGA-XF-A8HD-01 19 52570233 52570233 C T ZNF841 Missense_Mutation p.G301D 0.14 tolerated(0.4) benign(0.003) TCGA-XF-A8HD-01 19 52941662 52941662 C G ZNF534 Missense_Mutation p.L330V 0.19 tolerated(0.06) benign(0.154) TCGA-XF-A8HD-01 19 53855507 53855507 G C ZNF845 Missense_Mutation p.E527Q 0.16 tolerated(0.23) possibly_damaging(0.845) TCGA-XF-A8HD-01 19 5626462 5626462 C T SAFB Missense_Mutation p.S79F 0.17 tolerated(0.3) probably_damaging(0.961) TCGA-XF-A8HD-01 19 56372881 56372881 G A NLRP4 Silent p.L662L 0.19 TCGA-XF-A8HD-01 19 56423159 56423159 G T NLRP13 Nonsense_Mutation p.S675* 0.12 TCGA-XF-A8HD-01 19 56466163 56466163 G C NLRP8 Missense_Mutation p.E247Q 0.18 deleterious(0.01) probably_damaging(0.961) TCGA-XF-A8HD-01 19 56701381 56701381 C T ZSCAN5B Missense_Mutation p.G435R 0.19 tolerated(0.74) probably_damaging(1) TCGA-XF-A8HD-01 19 57335874 57335874 C T PEG3 Silent p.R50R 0.13 TCGA-XF-A8HD-01 19 57802962 57802962 C G ZNF460 Silent p.L351L 0.29 TCGA-XF-A8HD-01 19 58352632 58352632 C T ZNF587B Missense_Mutation p.S197L 0.30 tolerated(0.06) benign(0.059) TCGA-XF-A8HD-01 19 58639942 58639942 G T ZNF329 Missense_Mutation p.T310K 0.10 deleterious(0) probably_damaging(0.99) TCGA-XF-A8HD-01 19 58982436 58982436 G A ZNF324 Missense_Mutation p.E193K 0.34 tolerated(0.71) benign(0.002) TCGA-XF-A8HD-01 19 6190418 6190418 C G ACSBG2 Intron 0.38 TCGA-XF-A8HD-01 19 6190474 6190474 C G ACSBG2 Intron 0.17 TCGA-XF-A8HD-01 19 6306708 6306708 C G ACER1 3'UTR 0.17 TCGA-XF-A8HD-01 19 6306739 6306739 C T ACER1 Missense_Mutation p.D261N 0.14 tolerated(0.61) benign(0.001) TCGA-XF-A8HD-01 19 8922260 8922260 C A ZNF558 Missense_Mutation p.R302S 0.10 tolerated(0.62) probably_damaging(0.963) TCGA-XF-A8HD-01 1 100194138 100194138 C A FRRS1 Missense_Mutation p.R306I 0.25 tolerated(0.09) probably_damaging(0.993) TCGA-XF-A8HD-01 1 103345328 103345328 C T COL11A1 Missense_Mutation p.D1729N 0.05 unknown(0) TCGA-XF-A8HD-01 1 109369888 109369888 G C AKNAD1 Missense_Mutation p.I625M 0.13 tolerated(0.11) benign(0.118) TCGA-XF-A8HD-01 1 109745563 109745563 C T KIAA1324 Intron 0.16 TCGA-XF-A8HD-01 1 109780546 109780546 C G SARS 3'UTR 0.27 TCGA-XF-A8HD-01 1 11259718 11259718 C G MTOR Silent p.L1329L 0.17 TCGA-XF-A8HD-01 1 114942135 114942135 C G TRIM33 Missense_Mutation p.D1022H 0.17 deleterious(0) possibly_damaging(0.811) TCGA-XF-A8HD-01 1 11893941 11893941 C G CLCN6 Missense_Mutation p.F460L 0.51 tolerated(0.06) probably_damaging(0.984) TCGA-XF-A8HD-01 1 12351135 12351135 C A VPS13D Silent p.R1936R 0.55 TCGA-XF-A8HD-01 1 150310753 150310753 C T PRPF3 Missense_Mutation p.P385S 0.12 deleterious(0) probably_damaging(0.988) TCGA-XF-A8HD-01 1 150443585 150443585 G A RPRD2 Missense_Mutation p.D721N 0.20 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-XF-A8HD-01 1 150551605 150551605 G C MCL1 Silent p.L134L 0.19 TCGA-XF-A8HD-01 1 152080453 152080453 C G TCHH Missense_Mutation p.R1747T 0.15 unknown(0) TCGA-XF-A8HD-01 1 152080527 152080527 C G TCHH Missense_Mutation p.E1722D 0.16 unknown(0) TCGA-XF-A8HD-01 1 152129163 152129163 C A RPTN Nonsense_Mutation p.E138* 0.14 TCGA-XF-A8HD-01 1 152277914 152277914 C G FLG Missense_Mutation p.D3150H 0.11 unknown(0) TCGA-XF-A8HD-01 1 153587480 153587480 C G S100A14 Missense_Mutation p.E66Q 0.20 tolerated(0.14) benign(0.389) TCGA-XF-A8HD-01 1 153946122 153946122 C T CREB3L4 Silent p.I308I 0.11 TCGA-XF-A8HD-01 1 154144687 154144687 C T TPM3 Intron 0.37 TCGA-XF-A8HD-01 1 154998839 154998839 C T DCST2 Missense_Mutation p.G517D 0.18 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 1 155154467 155154467 G C TRIM46 Silent p.L576L 0.10 TCGA-XF-A8HD-01 1 155238129 155238129 C A CLK2 Missense_Mutation p.G169V 0.08 deleterious(0) probably_damaging(0.98) TCGA-XF-A8HD-01 1 155650233 155650233 C T YY1AP1 Missense_Mutation p.E137K 0.29 deleterious(0) benign(0.139) TCGA-XF-A8HD-01 1 160144437 160144437 C T ATP1A4 Silent p.G737G 0.11 TCGA-XF-A8HD-01 1 161138804 161138804 C T PPOX Missense_Mutation p.S213L 0.21 deleterious(0.01) possibly_damaging(0.845) TCGA-XF-A8HD-01 1 161138878 161138878 C T PPOX Nonsense_Mutation p.Q238* 0.20 TCGA-XF-A8HD-01 1 161681851 161681851 C G FCRLA Missense_Mutation p.F232L 0.11 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 1 169356242 169356242 G C BLZF1 Missense_Mutation p.R342T 0.48 deleterious(0.04) benign(0.007) TCGA-XF-A8HD-01 1 169356359 169356359 G C BLZF1 Missense_Mutation p.R381T 0.46 deleterious(0.02) benign(0.066) TCGA-XF-A8HD-01 1 171070886 171070886 G C FMO3 Intron 0.31 TCGA-XF-A8HD-01 1 173567110 173567110 G A SLC9C2 Missense_Mutation p.S97L 0.12 tolerated(0.8) benign(0.007) TCGA-XF-A8HD-01 1 179055017 179055017 G A TOR3A Missense_Mutation p.D210N 0.19 tolerated(0.06) probably_damaging(0.984) TCGA-XF-A8HD-01 1 179887085 179887085 C T TOR1AIP1 Missense_Mutation p.S488F 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 1 183109607 183109607 C G LAMC1 Silent p.L1514L 0.13 TCGA-XF-A8HD-01 1 185892566 185892566 C G HMCN1 Missense_Mutation p.P356A 0.13 probably_damaging(0.956) TCGA-XF-A8HD-01 1 192150448 192150448 C G RGS18 Missense_Mutation p.L104V 0.13 deleterious(0) probably_damaging(0.967) TCGA-XF-A8HD-01 1 197061082 197061082 A G ASPM Silent p.A3133A 0.16 TCGA-XF-A8HD-01 1 200080333 200080333 G A NR5A2 Missense_Mutation p.D372N 0.18 tolerated(0.35) benign(0.099) TCGA-XF-A8HD-01 1 200613377 200613377 G A DDX59 3'UTR 0.10 TCGA-XF-A8HD-01 1 202914134 202914134 C T ADIPOR1 Silent p.E198E 0.15 TCGA-XF-A8HD-01 1 205128798 205128798 C T DSTYK Silent p.P705P 0.13 TCGA-XF-A8HD-01 1 207646454 207646454 G C CR2 Missense_Mutation p.L636F 0.17 deleterious(0) probably_damaging(0.993) TCGA-XF-A8HD-01 1 21804653 21804653 G C NBPF3 Missense_Mutation p.E337Q 0.17 tolerated(0.06) probably_damaging(0.913) TCGA-XF-A8HD-01 1 22903042 22903042 C G EPHA8 Silent p.L164L 0.22 TCGA-XF-A8HD-01 1 230839048 230839048 C T AGT Missense_Mutation p.E433K 0.12 tolerated(1) benign(0.008) TCGA-XF-A8HD-01 1 231401129 231401129 G A GNPAT Nonsense_Mutation p.W220* 0.14 TCGA-XF-A8HD-01 1 232568055 232568055 G A SIPA1L2 Silent p.I1398I 0.15 TCGA-XF-A8HD-01 1 237863617 237863617 G T RYR2 Nonsense_Mutation p.E3073* 0.46 TCGA-XF-A8HD-01 1 245018781 245018781 G C HNRNPU Nonsense_Mutation p.S766* 0.13 TCGA-XF-A8HD-01 1 247151206 247151206 C G ZNF695 Missense_Mutation p.R204T 0.22 tolerated(0.09) possibly_damaging(0.872) TCGA-XF-A8HD-01 1 248616212 248616212 G A OR2T2 Silent p.V38V 0.09 TCGA-XF-A8HD-01 1 27105930 27105931 - G ARID1A Frame_Shift_Ins p.D1850Gfs*4 0.54 TCGA-XF-A8HD-01 1 27685975 27685975 G C MAP3K6 Silent p.L786L 0.48 TCGA-XF-A8HD-01 1 32044827 32044827 C G TINAGL1 Missense_Mutation p.I111M 0.58 tolerated(0.22) benign(0.057) TCGA-XF-A8HD-01 1 35223235 35223235 G A GJB5 Missense_Mutation p.E102K 0.05 tolerated(0.09) possibly_damaging(0.734) TCGA-XF-A8HD-01 1 39914396 39914396 G C MACF1 Missense_Mutation p.R4681T 0.16 probably_damaging(0.999) TCGA-XF-A8HD-01 1 46782238 46782238 C T UQCRH Silent p.L86L 0.45 TCGA-XF-A8HD-01 1 53516233 53516233 C A SCP2 Intron 0.14 TCGA-XF-A8HD-01 1 54354598 54354598 C G YIPF1 Missense_Mutation p.D5H 0.08 deleterious(0.03) possibly_damaging(0.886) TCGA-XF-A8HD-01 1 64669776 64669776 G C UBE2U Missense_Mutation p.D15H 0.46 deleterious(0) possibly_damaging(0.682) TCGA-XF-A8HD-01 1 65147783 65147783 G A CACHD1 Missense_Mutation p.D1143N 0.59 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HD-01 1 66102490 66102490 A C LEPR Missense_Mutation p.K1097T 0.14 tolerated(0.26) benign(0.004) TCGA-XF-A8HD-01 1 67161025 67161025 G A SGIP1 Intron 0.16 TCGA-XF-A8HD-01 1 75055594 75055594 G C C1orf173 Missense_Mutation p.H633D 0.09 deleterious(0) possibly_damaging(0.754) TCGA-XF-A8HD-01 1 75097510 75097510 G C C1orf173 Missense_Mutation p.P236A 0.08 deleterious(0.03) probably_damaging(1) TCGA-XF-A8HD-01 1 76215190 76215190 T A ACADM Silent p.G269G 0.38 TCGA-XF-A8HD-01 1 76384632 76384632 G A ASB17 3'UTR 0.06 TCGA-XF-A8HD-01 1 7797462 7797462 G C CAMTA1 Missense_Mutation p.E1164Q 0.15 deleterious(0.02) possibly_damaging(0.587) TCGA-XF-A8HD-01 1 78034112 78034112 C G ZZZ3 Missense_Mutation p.E791Q 0.38 deleterious(0) probably_damaging(0.982) TCGA-XF-A8HD-01 1 89597871 89597871 A C GBP7 Missense_Mutation p.C626W 0.10 tolerated_low_confidence(0.19) benign(0.258) TCGA-XF-A8HD-01 1 89658696 89658696 G A GBP4 Silent p.F187F 0.10 TCGA-XF-A8HD-01 1 90473035 90473035 C A ZNF326 Missense_Mutation p.S114Y 0.07 tolerated(0.78) probably_damaging(0.974) TCGA-XF-A8HD-01 1 91404769 91404769 G A ZNF644 Silent p.S714S 0.20 TCGA-XF-A8HD-01 20 17623695 17623695 C T RRBP1 Missense_Mutation p.E231K 0.12 tolerated(0.06) possibly_damaging(0.502) TCGA-XF-A8HD-01 20 2777024 2777024 G A CPXM1 Silent p.L371L 0.11 TCGA-XF-A8HD-01 20 2845911 2845911 C T VPS16 Missense_Mutation p.H708Y 0.11 tolerated(0.39) benign(0.116) TCGA-XF-A8HD-01 20 30584459 30584459 C T XKR7 Silent p.R313R 0.44 TCGA-XF-A8HD-01 20 30689321 30689321 G A HCK Silent p.%3D 0.42 TCGA-XF-A8HD-01 20 31023702 31023702 C T ASXL1 Nonsense_Mutation p.Q1063* 0.10 TCGA-XF-A8HD-01 20 31062524 31062524 C T C20orf112 5'UTR 0.14 TCGA-XF-A8HD-01 20 34312986 34312986 C T RBM39 Missense_Mutation p.E170K 0.15 deleterious(0.03) benign(0.241) TCGA-XF-A8HD-01 20 35627318 35627318 G C RBL1 Missense_Mutation p.I1017M 0.21 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 20 37154656 37154656 C T RALGAPB Missense_Mutation p.T674M 0.12 deleterious(0) probably_damaging(0.995) TCGA-XF-A8HD-01 20 42161427 42161427 G T L3MBTL1 Silent p.L411L 0.16 TCGA-XF-A8HD-01 20 44639185 44639185 C A MMP9 Missense_Mutation p.F145L 0.43 deleterious(0.05) possibly_damaging(0.63) TCGA-XF-A8HD-01 20 44670016 44670016 C A SLC12A5 Silent p.V324V 0.10 TCGA-XF-A8HD-01 20 45004396 45004396 C T ELMO2 Missense_Mutation p.E281K 0.08 deleterious(0.01) benign(0.188) TCGA-XF-A8HD-01 20 46295092 46295092 C T SULF2 Missense_Mutation p.D573N 0.09 tolerated(0.2) benign(0.005) TCGA-XF-A8HD-01 20 53260054 53260054 C T DOK5 Missense_Mutation p.R265C 0.16 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-XF-A8HD-01 20 57568682 57568682 G C NELFCD Missense_Mutation p.E500Q 0.13 tolerated(0.05) possibly_damaging(0.524) TCGA-XF-A8HD-01 20 60718859 60718859 G T SS18L1 5'UTR 0.19 TCGA-XF-A8HD-01 20 60987934 60987934 C G RBBP8NL Silent p.L566L 0.11 TCGA-XF-A8HD-01 20 62658414 62658414 G A PRPF6 Missense_Mutation p.R703Q 0.15 tolerated(0.31) benign(0) TCGA-XF-A8HD-01 20 62730146 62730146 C T OPRL1 Silent p.P369P 0.16 TCGA-XF-A8HD-01 20 8352047 8352047 C G PLCB1 Missense_Mutation p.L66V 0.09 tolerated(0.12) benign(0.001) TCGA-XF-A8HD-01 21 16338806 16338806 G C NRIP1 Missense_Mutation p.Q570E 0.10 tolerated(0.07) probably_damaging(0.984) TCGA-XF-A8HD-01 21 30257550 30257550 C G N6AMT1 Missense_Mutation p.A40P 0.09 benign(0.396) TCGA-XF-A8HD-01 21 32499465 32499465 C T TIAM1 Missense_Mutation p.E1351K 0.17 deleterious(0) benign(0.262) TCGA-XF-A8HD-01 21 38997601 38997601 C T KCNJ6 Missense_Mutation p.E378K 0.15 tolerated(0.82) benign(0.042) TCGA-XF-A8HD-01 21 45507700 45507700 C T TRAPPC10 Missense_Mutation p.S887L 0.23 tolerated(0.06) benign(0.002) TCGA-XF-A8HD-01 21 45811478 45811478 C T TRPM2 Silent p.L588L 0.22 TCGA-XF-A8HD-01 21 46309340 46309340 C G ITGB2 Missense_Mutation p.E576D 0.19 tolerated(0.34) benign(0.001) TCGA-XF-A8HD-01 21 47656811 47656811 G C MCM3AP Missense_Mutation p.Q1906E 0.13 tolerated(0.29) possibly_damaging(0.9) TCGA-XF-A8HD-01 21 47737219 47737219 C G C21orf58 Intron 0.23 TCGA-XF-A8HD-01 22 19184051 19184051 C G CLTCL1 Missense_Mutation p.Q1330H 0.48 deleterious(0.04) possibly_damaging(0.894) TCGA-XF-A8HD-01 22 19808238 19808238 C T GNB1L Missense_Mutation p.S46N 0.50 tolerated(1) benign(0.006) TCGA-XF-A8HD-01 22 20130558 20130558 G T ZDHHC8 Missense_Mutation p.A469S 0.18 tolerated(0.71) possibly_damaging(0.587) TCGA-XF-A8HD-01 22 22869822 22869822 C G ZNF280A Missense_Mutation p.E45Q 0.58 deleterious(0) probably_damaging(0.974) TCGA-XF-A8HD-01 22 23243306 23243306 C T IGLC2 Missense_Mutation p.A51V 0.30 benign(0.013) TCGA-XF-A8HD-01 22 29747711 29747711 G C AP1B1 Missense_Mutation p.Q348E 0.14 tolerated(0.99) benign(0.001) TCGA-XF-A8HD-01 22 31042804 31042804 C T SLC35E4 Missense_Mutation p.S280F 0.26 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 22 35799473 35799473 C T MCM5 Missense_Mutation p.L121F 0.06 tolerated(0.29) benign(0.013) TCGA-XF-A8HD-01 22 36681779 36681779 C T MYH9 Silent p.Q1733Q 0.62 TCGA-XF-A8HD-01 22 41513377 41513377 A G EP300 Missense_Mutation p.N94S 0.09 unknown(0) TCGA-XF-A8HD-01 22 42141907 42141907 G C MEI1 Missense_Mutation p.Q519H 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-XF-A8HD-01 22 42221930 42221930 G A CCDC134 3'UTR 0.30 TCGA-XF-A8HD-01 22 42992309 42992309 C T POLDIP3 Silent p.Q232Q 0.09 TCGA-XF-A8HD-01 22 44547408 44547408 G C PARVB Missense_Mutation p.E307Q 0.24 tolerated(0.18) benign(0.209) TCGA-XF-A8HD-01 22 45919004 45919004 G C FBLN1 Intron 0.12 TCGA-XF-A8HD-01 22 46787172 46787172 C T CELSR1 Missense_Mutation p.G2054D 0.20 deleterious(0) probably_damaging(0.984) TCGA-XF-A8HD-01 2 106013183 106013183 G C FHL2 Intron 0.44 TCGA-XF-A8HD-01 2 108496459 108496459 G C RGPD4 Missense_Mutation p.E1654Q 0.15 tolerated_low_confidence(0.06) benign(0.092) TCGA-XF-A8HD-01 2 112944738 112944738 G A FBLN7 Missense_Mutation p.M325I 0.49 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A8HD-01 2 120221730 120221730 G A SCTR Missense_Mutation p.S202L 0.20 tolerated(0.05) possibly_damaging(0.696) TCGA-XF-A8HD-01 2 135779355 135779355 G C MAP3K19 Missense_Mutation p.S23C 0.13 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-XF-A8HD-01 2 136620253 136620253 C T MCM6 Missense_Mutation p.E382K 0.17 deleterious(0) possibly_damaging(0.8) TCGA-XF-A8HD-01 2 136620287 136620287 C T MCM6 Silent p.L370L 0.12 TCGA-XF-A8HD-01 2 145157359 145157359 C G ZEB2 Missense_Mutation p.Q465H 0.57 tolerated(0.07) possibly_damaging(0.677) TCGA-XF-A8HD-01 2 153483237 153483237 C T FMNL2 Missense_Mutation p.H721Y 0.19 benign(0.291) TCGA-XF-A8HD-01 2 155555387 155555387 C G KCNJ3 Missense_Mutation p.Q34E 0.09 tolerated_low_confidence(1) benign(0.007) TCGA-XF-A8HD-01 2 157352656 157352656 C G GPD2 Missense_Mutation p.S68C 0.14 deleterious(0.03) benign(0.246) TCGA-XF-A8HD-01 2 158181263 158181263 C G ERMN Missense_Mutation p.E98Q 0.15 deleterious(0) benign(0.084) TCGA-XF-A8HD-01 2 178096314 178096314 G A NFE2L2 Silent p.F339F 0.10 TCGA-XF-A8HD-01 2 179615343 179615343 C T TTN Intron 0.23 TCGA-XF-A8HD-01 2 18113160 18113160 G A KCNS3 Missense_Mutation p.M295I 0.41 deleterious(0.05) benign(0.124) TCGA-XF-A8HD-01 2 182787032 182787032 C G SSFA2 Missense_Mutation p.P1190A 0.11 tolerated(0.47) benign(0.007) TCGA-XF-A8HD-01 2 189162296 189162296 G C GULP1 Intron 0.18 TCGA-XF-A8HD-01 2 196729028 196729028 C G DNAH7 Missense_Mutation p.D2451H 0.37 deleterious(0.01) probably_damaging(1) TCGA-XF-A8HD-01 2 202207134 202207134 G C ALS2CR12 Silent p.L161L 0.63 TCGA-XF-A8HD-01 2 203806611 203806611 G A CARF 5'UTR 0.53 TCGA-XF-A8HD-01 2 203807567 203807567 G C CARF Missense_Mutation p.Q61H 0.60 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-XF-A8HD-01 2 204161622 204161622 G A CYP20A1 Silent p.K460K 0.11 TCGA-XF-A8HD-01 2 212495208 212495208 C G ERBB4 Missense_Mutation p.L686F 0.09 deleterious(0.01) probably_damaging(0.943) TCGA-XF-A8HD-01 2 219868838 219868840 CTC - CCDC108 In_Frame_Del p.E1797del 0.15 TCGA-XF-A8HD-01 2 228882203 228882203 C G SPHKAP Missense_Mutation p.E1123Q 0.70 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 2 37374063 37374063 C G EIF2AK2 Missense_Mutation p.R58T 0.10 deleterious(0.01) possibly_damaging(0.773) TCGA-XF-A8HD-01 2 39222505 39222505 T C SOS1 Silent p.L1035L 0.60 TCGA-XF-A8HD-01 2 39487861 39487861 C T MAP4K3 Missense_Mutation p.E732K 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-XF-A8HD-01 2 54482494 54482494 C T TSPYL6 Missense_Mutation p.M265I 0.57 deleterious(0.02) benign(0.017) TCGA-XF-A8HD-01 2 64685422 64685422 G A LGALSL Missense_Mutation p.E127K 0.11 deleterious(0) probably_damaging(0.991) TCGA-XF-A8HD-01 2 70508746 70508746 C G SNRPG 3'UTR 0.19 TCGA-XF-A8HD-01 2 9637354 9637354 G C ADAM17 Missense_Mutation p.P558A 0.19 tolerated(0.12) probably_damaging(0.951) TCGA-XF-A8HD-01 3 100489650 100489650 C T ABI3BP Missense_Mutation p.V849M 0.12 deleterious(0) probably_damaging(0.993) TCGA-XF-A8HD-01 3 10127575 10127575 G A FANCD2 Missense_Mutation p.E1102K 0.17 deleterious(0.03) possibly_damaging(0.476) TCGA-XF-A8HD-01 3 10971013 10971013 G A SLC6A11 Silent p.V453V 0.18 TCGA-XF-A8HD-01 3 111312476 111312476 C T ZBED2 Missense_Mutation p.M191I 0.35 tolerated(0.05) benign(0.08) TCGA-XF-A8HD-01 3 113755494 113755494 C T KIAA1407 Silent p.Q185Q 0.11 TCGA-XF-A8HD-01 3 124103748 124103748 G A KALRN Silent p.T607T 0.21 TCGA-XF-A8HD-01 3 126135276 126135276 C T CCDC37 Silent p.L115L 0.19 TCGA-XF-A8HD-01 3 128987417 128987417 C G COPG1 Silent p.L576L 0.13 TCGA-XF-A8HD-01 3 130340680 130340680 G C COL6A6 Missense_Mutation p.G1611R 0.34 tolerated(0.52) possibly_damaging(0.517) TCGA-XF-A8HD-01 3 134086403 134086403 C T AMOTL2 Missense_Mutation p.R326K 0.45 tolerated(0.19) benign(0.019) TCGA-XF-A8HD-01 3 141277788 141277788 G C RASA2 Missense_Mutation p.E249Q 0.31 tolerated(0.07) possibly_damaging(0.82) TCGA-XF-A8HD-01 3 142186838 142186838 C G ATR Missense_Mutation p.E2209Q 0.47 tolerated(0.47) benign(0.125) TCGA-XF-A8HD-01 3 150127624 150127624 C T TSC22D2 Missense_Mutation p.R163C 0.29 deleterious(0) possibly_damaging(0.689) TCGA-XF-A8HD-01 3 150127632 150127632 C T TSC22D2 Silent p.I165I 0.29 TCGA-XF-A8HD-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.54 deleterious(0.02) probably_damaging(0.959) TCGA-XF-A8HD-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.16 deleterious_low_confidence(0.02) benign(0.001) TCGA-XF-A8HD-01 3 185390431 185390431 C G IGF2BP2 Missense_Mutation p.L366F 0.39 deleterious(0) probably_damaging(0.981) TCGA-XF-A8HD-01 3 195791217 195791217 C T TFRC Silent p.L427L 0.16 TCGA-XF-A8HD-01 3 197672495 197672495 C T IQCG Missense_Mutation p.E2K 0.22 tolerated_low_confidence(0.07) benign(0.395) TCGA-XF-A8HD-01 3 38035413 38035413 G A VILL Missense_Mutation p.E29K 0.21 tolerated(0.39) possibly_damaging(0.523) TCGA-XF-A8HD-01 3 42982787 42982787 G A KRBOX1 Missense_Mutation p.E36K 0.20 deleterious(0.01) benign(0.021) TCGA-XF-A8HD-01 3 47042619 47042619 G A NBEAL2 Silent p.Q1478Q 0.12 TCGA-XF-A8HD-01 3 48699075 48699075 C T CELSR3 Silent p.Q331Q 0.24 TCGA-XF-A8HD-01 3 52724975 52724975 G C GNL3 Missense_Mutation p.K223N 0.28 tolerated(0.25) benign(0.002) TCGA-XF-A8HD-01 3 53220695 53220695 G A PRKCD Missense_Mutation p.E446K 0.24 tolerated(0.08) possibly_damaging(0.472) TCGA-XF-A8HD-01 3 53263330 53263330 G C TKT Missense_Mutation p.I418M 0.16 deleterious(0.04) possibly_damaging(0.876) TCGA-XF-A8HD-01 3 53346289 53346289 G A DCP1A Silent p.A164A 0.26 TCGA-XF-A8HD-01 3 58120455 58120455 G A FLNB Missense_Mutation p.D1574N 0.18 deleterious(0) probably_damaging(0.945) TCGA-XF-A8HD-01 3 78666833 78666833 C G ROBO1 Missense_Mutation p.E1412Q 0.23 deleterious(0.01) probably_damaging(0.968) TCGA-XF-A8HD-01 3 98530077 98530077 C G DCBLD2 Missense_Mutation p.D513H 0.50 deleterious(0) possibly_damaging(0.519) TCGA-XF-A8HD-01 4 106320274 106320274 G A PPA2 Missense_Mutation p.L235F 0.15 tolerated(0.23) possibly_damaging(0.873) TCGA-XF-A8HD-01 4 108566184 108566184 C G PAPSS1 Missense_Mutation p.G427A 0.11 deleterious(0.05) probably_damaging(1) TCGA-XF-A8HD-01 4 113570770 113570770 C G LARP7 Missense_Mutation p.Q415E 0.32 tolerated(0.11) benign(0.034) TCGA-XF-A8HD-01 4 126328195 126328195 C A FAT4 Nonsense_Mutation p.S1823* 0.19 TCGA-XF-A8HD-01 4 126329602 126329602 C G FAT4 Missense_Mutation p.S1858C 0.11 probably_damaging(0.998) TCGA-XF-A8HD-01 4 146575225 146575225 G A MMAA Missense_Mutation p.R300Q 0.34 deleterious(0.04) possibly_damaging(0.75) TCGA-XF-A8HD-01 4 15518264 15518264 G C CC2D2A Missense_Mutation p.G345A 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A8HD-01 4 155471454 155471454 C G PLRG1 Missense_Mutation p.E3Q 0.16 tolerated(0.16) benign(0.004) TCGA-XF-A8HD-01 4 159629733 159629733 G C ETFDH 3'UTR 0.19 TCGA-XF-A8HD-01 4 169393911 169393911 G A DDX60L 5'UTR 0.23 TCGA-XF-A8HD-01 4 169819644 169819644 G C PALLD Missense_Mutation p.E751Q 0.24 deleterious(0) probably_damaging(0.981) TCGA-XF-A8HD-01 4 175158634 175158634 G C FBXO8 Missense_Mutation p.Q297E 0.11 tolerated(0.59) benign(0.029) TCGA-XF-A8HD-01 4 177071224 177071224 T C WDR17 Missense_Mutation p.L717P 0.15 deleterious(0) possibly_damaging(0.677) TCGA-XF-A8HD-01 4 2242388 2242388 C A HAUS3 Missense_Mutation p.D96Y 0.29 deleterious(0) probably_damaging(0.919) TCGA-XF-A8HD-01 4 30725945 30725945 C T PCDH7 Silent p.V967V 0.21 TCGA-XF-A8HD-01 4 39297347 39297347 C T RFC1 Silent p.L948L 0.27 TCGA-XF-A8HD-01 4 47322193 47322193 G A GABRB1 Missense_Mutation p.D171N 0.30 deleterious(0) possibly_damaging(0.887) TCGA-XF-A8HD-01 4 48384894 48384894 C G SLAIN2 Nonsense_Mutation p.S391* 0.33 TCGA-XF-A8HD-01 4 54344784 54344784 G A LNX1 Silent p.V537V 0.36 TCGA-XF-A8HD-01 4 57182829 57182829 C T KIAA1211 Missense_Mutation p.S1054F 0.27 deleterious(0) possibly_damaging(0.683) TCGA-XF-A8HD-01 4 57843603 57843603 C T NOA1 Missense_Mutation p.R50H 0.31 tolerated_low_confidence(0.22) benign(0.001) TCGA-XF-A8HD-01 4 68497623 68497623 G C UBA6 Missense_Mutation p.L716V 0.11 tolerated(0.1) benign(0.084) TCGA-XF-A8HD-01 4 71670083 71670083 G C RUFY3 Missense_Mutation p.E557Q 0.14 tolerated(0.06) benign(0.033) TCGA-XF-A8HD-01 4 76881266 76881266 G C SDAD1 Missense_Mutation p.A479G 0.18 deleterious(0) probably_damaging(0.955) TCGA-XF-A8HD-01 4 81121377 81121377 A G PRDM8 Missense_Mutation p.H48R 0.34 deleterious(0) possibly_damaging(0.84) TCGA-XF-A8HD-01 5 108704389 108704389 C G PJA2 Missense_Mutation p.E448Q 0.23 deleterious(0.03) probably_damaging(0.959) TCGA-XF-A8HD-01 5 109200780 109200780 G C MAN2A1 Missense_Mutation p.R1072T 0.27 tolerated(0.06) probably_damaging(1) TCGA-XF-A8HD-01 5 124080692 124080692 G A ZNF608 5'UTR 0.23 TCGA-XF-A8HD-01 5 127681183 127681183 G A FBN2 Missense_Mutation p.A1028V 0.18 deleterious(0) benign(0.309) TCGA-XF-A8HD-01 5 135227943 135227943 C G IL9 3'UTR 0.33 TCGA-XF-A8HD-01 5 13708358 13708358 G C DNAH5 Silent p.L4404L 0.21 TCGA-XF-A8HD-01 5 137089266 137089266 G C HNRNPA0 Missense_Mutation p.Q164E 0.17 deleterious(0.01) benign(0.417) TCGA-XF-A8HD-01 5 137089311 137089311 G C HNRNPA0 Missense_Mutation p.H149D 0.13 deleterious(0.03) benign(0.227) TCGA-XF-A8HD-01 5 140725596 140725596 G A PCDHGA3 Missense_Mutation p.D666N 0.25 tolerated_low_confidence(0.12) benign(0.379) TCGA-XF-A8HD-01 5 145562071 145562071 G A LARS 5'UTR 0.26 TCGA-XF-A8HD-01 5 149773037 149773037 C G TCOF1 Missense_Mutation p.L1235V 0.19 tolerated(0.58) possibly_damaging(0.52) TCGA-XF-A8HD-01 5 150660632 150660632 C G SLC36A3 Missense_Mutation p.E404Q 0.13 tolerated(0.21) benign(0.316) TCGA-XF-A8HD-01 5 158589954 158589954 G C RNF145 Missense_Mutation p.L449V 0.24 deleterious(0) probably_damaging(0.997) TCGA-XF-A8HD-01 5 172197189 172197189 G T DUSP1 Missense_Mutation p.S163Y 0.12 deleterious(0.01) benign(0.287) TCGA-XF-A8HD-01 5 179020628 179020628 G T RUFY1 Missense_Mutation p.Q465H 0.10 deleterious(0) probably_damaging(0.991) TCGA-XF-A8HD-01 5 33637760 33637760 G A ADAMTS12 Missense_Mutation p.R604W 0.19 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 5 36066806 36066806 G C UGT3A2 Missense_Mutation p.S29C 0.20 tolerated(0.22) benign(0.208) TCGA-XF-A8HD-01 5 37173934 37173934 C T C5orf42 Missense_Mutation p.E2032K 0.18 deleterious(0.05) possibly_damaging(0.474) TCGA-XF-A8HD-01 5 44815406 44815406 G C MRPS30 3'UTR 0.17 TCGA-XF-A8HD-01 5 55094277 55094277 C G DDX4 Nonsense_Mutation p.S498* 0.13 TCGA-XF-A8HD-01 5 56171105 56171105 G C MAP3K1 Missense_Mutation p.D645H 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 5 70763255 70763255 C G BDP1 Missense_Mutation p.S287C 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 5 72179002 72179002 G A TNPO1 Missense_Mutation p.E365K 0.15 tolerated(0.65) benign(0.06) TCGA-XF-A8HD-01 5 72419667 72419667 G A TMEM171 Missense_Mutation p.R156Q 0.04 tolerated(1) benign(0.001) TCGA-XF-A8HD-01 5 73931808 73931808 G C ENC1 Missense_Mutation p.S168C 0.27 tolerated(0.34) probably_damaging(0.996) TCGA-XF-A8HD-01 5 75913496 75913496 G A F2RL2 Silent p.L346L 0.17 TCGA-XF-A8HD-01 5 76259275 76259275 T C CRHBP Silent p.F267F 0.16 TCGA-XF-A8HD-01 5 76335460 76335460 G A AGGF1 Silent p.P262P 0.23 TCGA-XF-A8HD-01 5 82835595 82835595 C T VCAN Missense_Mutation p.S2258L 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 5 90087089 90087089 G A GPR98 Missense_Mutation p.E4815K 0.60 possibly_damaging(0.651) TCGA-XF-A8HD-01 5 92921146 92921146 A C NR2F1 Missense_Mutation p.Q139H 0.21 deleterious(0) probably_damaging(0.992) TCGA-XF-A8HD-01 5 94756015 94756015 G C FAM81B Missense_Mutation p.D189H 0.17 deleterious(0) probably_damaging(0.982) TCGA-XF-A8HD-01 5 96440902 96440902 C G LIX1 Missense_Mutation p.E159Q 0.16 tolerated(0.08) probably_damaging(0.991) TCGA-XF-A8HD-01 6 111498428 111498428 C G SLC16A10 Missense_Mutation p.L168V 0.12 tolerated(0.08) probably_damaging(0.94) TCGA-XF-A8HD-01 6 12125669 12125669 A G HIVEP1 Missense_Mutation p.T1881A 0.22 tolerated(0.37) benign(0.005) TCGA-XF-A8HD-01 6 1390656 1390656 C T FOXF2 Silent p.F158F 0.32 TCGA-XF-A8HD-01 6 146256275 146256275 C T SHPRH Missense_Mutation p.E920K 0.19 tolerated(0.07) benign(0.386) TCGA-XF-A8HD-01 6 157454319 157454319 G T ARID1B Missense_Mutation p.Q843H 0.44 benign(0.026) TCGA-XF-A8HD-01 6 161502036 161502036 C T MAP3K4 Missense_Mutation p.R741W 0.28 deleterious(0) probably_damaging(0.987) TCGA-XF-A8HD-01 6 16327093 16327093 C T ATXN1 Silent p.V483V 0.28 TCGA-XF-A8HD-01 6 17800264 17800264 C G KIF13A Missense_Mutation p.E845D 0.34 tolerated(0.32) probably_damaging(0.992) TCGA-XF-A8HD-01 6 25610280 25610280 G A LRRC16A Missense_Mutation p.D1284N 0.10 deleterious_low_confidence(0.04) benign(0.026) TCGA-XF-A8HD-01 6 26225833 26225833 C G HIST1H3E 3'UTR 0.07 TCGA-XF-A8HD-01 6 27835292 27835292 G C HIST1H1B Missense_Mutation p.P6A 0.10 deleterious(0) unknown(0) TCGA-XF-A8HD-01 6 30552103 30552103 G C ABCF1 Missense_Mutation p.E413Q 0.24 tolerated(0.38) benign(0.03) TCGA-XF-A8HD-01 6 30593662 30593662 G C MRPS18B 3'UTR 0.34 TCGA-XF-A8HD-01 6 30613842 30613842 A G ATAT1 Splice_Site p.X338_splice 0.17 TCGA-XF-A8HD-01 6 31736858 31736858 G C VWA7 Missense_Mutation p.I480M 0.18 deleterious(0) probably_damaging(0.986) TCGA-XF-A8HD-01 6 31743869 31743869 C G VWA7 Missense_Mutation p.D129H 0.25 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HD-01 6 32820001 32820001 G A TAP1 Silent p.F303F 0.28 TCGA-XF-A8HD-01 6 32826303 32826303 G T PSMB9 Intron 0.15 TCGA-XF-A8HD-01 6 32827198 32827198 G C PSMB9 Missense_Mutation p.M183I 0.17 tolerated(0.51) benign(0.023) TCGA-XF-A8HD-01 6 33414421 33414421 G C SYNGAP1 Missense_Mutation p.E1218Q 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-XF-A8HD-01 6 42997089 42997089 C T RRP36 3'UTR 0.23 TCGA-XF-A8HD-01 6 43305947 43305947 G C ZNF318 Missense_Mutation p.S1930C 0.18 possibly_damaging(0.62) TCGA-XF-A8HD-01 6 43534924 43534924 G A XPO5 Silent p.L272L 0.18 TCGA-XF-A8HD-01 6 43565580 43565580 C T POLH Missense_Mutation p.S213L 0.40 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 6 47541982 47541982 G C CD2AP Missense_Mutation p.E242Q 0.17 deleterious(0.02) possibly_damaging(0.501) TCGA-XF-A8HD-01 6 52357171 52357171 G A EFHC1 3'UTR 0.14 TCGA-XF-A8HD-01 6 52357190 52357190 G C EFHC1 3'UTR 0.14 TCGA-XF-A8HD-01 6 55739458 55739458 G A BMP5 Missense_Mutation p.S69L 0.32 tolerated(0.73) benign(0.01) TCGA-XF-A8HD-01 6 71567881 71567881 G C SMAP1 Missense_Mutation p.Q406H 0.24 deleterious(0) possibly_damaging(0.886) TCGA-XF-A8HD-01 6 72011393 72011393 G A OGFRL1 Missense_Mutation p.A333T 0.17 tolerated(0.7) benign(0.004) TCGA-XF-A8HD-01 6 87964431 87964431 A G ZNF292 Missense_Mutation p.T362A 0.23 tolerated(0.22) benign(0.001) TCGA-XF-A8HD-01 7 100681437 100681437 C T MUC17 Missense_Mutation p.T2247I 0.15 unknown(0) TCGA-XF-A8HD-01 7 100849682 100849682 C T PLOD3 Silent p.V699V 0.54 TCGA-XF-A8HD-01 7 102952635 102952638 TCTT - PMPCB Intron 0.23 TCGA-XF-A8HD-01 7 103341395 103341395 C T RELN Silent p.K288K 0.45 TCGA-XF-A8HD-01 7 105516878 105516878 G C ATXN7L1 Missense_Mutation p.L43V 0.32 deleterious(0.05) possibly_damaging(0.502) TCGA-XF-A8HD-01 7 121652797 121652797 G A PTPRZ1 Missense_Mutation p.E1233K 0.24 tolerated_low_confidence(0.55) benign(0.005) TCGA-XF-A8HD-01 7 121701175 121701175 G C PTPRZ1 Silent p.V2283V 0.29 TCGA-XF-A8HD-01 7 131844386 131844386 C G PLXNA4 Silent p.L1502L 0.18 TCGA-XF-A8HD-01 7 150324848 150324848 C T GIMAP6 Missense_Mutation p.E280K 0.21 tolerated(0.12) benign(0.173) TCGA-XF-A8HD-01 7 20198037 20198037 G C MACC1 Missense_Mutation p.I649M 0.11 tolerated(0.24) benign(0.17) TCGA-XF-A8HD-01 7 20418838 20418838 C T ITGB8 Missense_Mutation p.R185C 0.14 deleterious(0) probably_damaging(0.993) TCGA-XF-A8HD-01 7 23293909 23293909 C G GPNMB Silent p.V115V 0.12 TCGA-XF-A8HD-01 7 24727181 24727181 T G MPP6 Missense_Mutation p.I524R 0.24 deleterious(0) benign(0.402) TCGA-XF-A8HD-01 7 28997354 28997354 G A AC005013.5 RNA 0.12 TCGA-XF-A8HD-01 7 35913376 35913376 C G SEPT7 Nonsense_Mutation p.S169* 0.11 TCGA-XF-A8HD-01 7 38370475 38370475 G A TRGV8 5'UTR 0.15 TCGA-XF-A8HD-01 7 42007421 42007421 C A GLI3 Missense_Mutation p.G735V 0.11 deleterious(0.01) possibly_damaging(0.493) TCGA-XF-A8HD-01 7 44080704 44080704 C T DBNL 5'Flank 0.21 TCGA-XF-A8HD-01 7 92161811 92161811 A - RBM48 Frame_Shift_Del p.K134Nfs*9 0.19 TCGA-XF-A8HD-01 7 95818688 95818688 C T SLC25A13 Missense_Mutation p.R284H 0.26 tolerated(0.1) benign(0.049) TCGA-XF-A8HD-01 7 98988603 98988603 C T ARPC1B Silent p.F196F 0.24 TCGA-XF-A8HD-01 7 99802709 99802709 C G STAG3 Silent p.L1011L 0.14 TCGA-XF-A8HD-01 8 10465826 10465826 C T RP1L1 Missense_Mutation p.E1928K 0.16 unknown(0) TCGA-XF-A8HD-01 8 105510296 105510296 C T LRP12 Missense_Mutation p.E162K 0.32 tolerated(0.32) benign(0.046) TCGA-XF-A8HD-01 8 117784020 117784020 G C UTP23 Missense_Mutation p.R230T 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-XF-A8HD-01 8 133854929 133854929 G A PHF20L1 Missense_Mutation p.E853K 0.11 deleterious(0.02) benign(0.056) TCGA-XF-A8HD-01 8 141557719 141557719 G C AGO2 Silent p.V532V 0.19 TCGA-XF-A8HD-01 8 143747165 143747165 C T JRK RNA 0.26 TCGA-XF-A8HD-01 8 144996499 144996499 G A PLEC Missense_Mutation p.S2634F 0.29 probably_damaging(0.961) TCGA-XF-A8HD-01 8 17486111 17486111 C A PDGFRL Silent p.L207L 0.23 TCGA-XF-A8HD-01 8 17611234 17611234 G C MTUS1 Missense_Mutation p.L695V 0.12 tolerated(0.62) benign(0.011) TCGA-XF-A8HD-01 8 23174555 23174555 C T LOXL2 Missense_Mutation p.E515K 0.18 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 8 24813256 24813256 G C CTD-2168K21.2 5'Flank 0.27 TCGA-XF-A8HD-01 8 25258543 25258543 C G DOCK5 Silent p.L1629L 0.15 TCGA-XF-A8HD-01 8 30701089 30701089 T C TEX15 Silent p.G1815G 0.05 TCGA-XF-A8HD-01 8 42742975 42742975 C G RNF170 Missense_Mutation p.L11F 0.11 tolerated_low_confidence(0.08) benign(0.016) TCGA-XF-A8HD-01 8 42958727 42958727 C T POMK Silent p.L12L 0.14 TCGA-XF-A8HD-01 8 42958758 42958758 C T POMK Silent p.L23L 0.13 TCGA-XF-A8HD-01 8 59518549 59518549 A T NSMAF Missense_Mutation p.Y300N 0.23 deleterious(0.05) benign(0.347) TCGA-XF-A8HD-01 8 61533420 61533420 G C RAB2A 3'UTR 0.40 TCGA-XF-A8HD-01 8 62366695 62366728 CCCAGGACAGCTTTCCTGCCCGCTTTGGAGGAGT - CLVS1 Splice_Site p.X211_splice 0.17 TCGA-XF-A8HD-01 8 66619324 66619324 G T MTFR1 Silent p.L199L 0.27 TCGA-XF-A8HD-01 8 66635836 66635836 G A PDE7A Missense_Mutation p.H395Y 0.15 deleterious(0.02) benign(0.145) TCGA-XF-A8HD-01 8 67089290 67089290 G T CRH Silent p.L141L 0.45 TCGA-XF-A8HD-01 8 67546780 67546780 C T VCPIP1 Missense_Mutation p.D1209N 0.26 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-XF-A8HD-01 8 69434155 69434155 G T C8orf34 Missense_Mutation p.S296I 0.12 deleterious(0.02) possibly_damaging(0.804) TCGA-XF-A8HD-01 8 73848878 73848878 C A KCNB2 Missense_Mutation p.Q430K 0.11 tolerated(0.05) benign(0.325) TCGA-XF-A8HD-01 8 77766338 77766338 C A ZFHX4 Nonsense_Mutation p.S2394* 0.31 TCGA-XF-A8HD-01 8 79601597 79601597 C T ZC2HC1A Missense_Mutation p.R165W 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 8 86377646 86377646 C G CA2 Silent p.L60L 0.13 TCGA-XF-A8HD-01 8 94929243 94929243 G A PDP1 5'UTR 0.24 TCGA-XF-A8HD-01 9 101340325 101340325 G C GABBR2 Missense_Mutation p.F117L 0.21 tolerated(0.17) benign(0.069) TCGA-XF-A8HD-01 9 103323781 103323781 C T TMEFF1 Missense_Mutation p.S293F 0.11 deleterious(0.02) probably_damaging(0.915) TCGA-XF-A8HD-01 9 111936849 111936849 C G EPB41L4B Missense_Mutation p.L896F 0.15 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-XF-A8HD-01 9 116838943 116838943 C T AMBP Silent p.V65V 0.22 TCGA-XF-A8HD-01 9 119802237 119802237 C T ASTN2 Silent p.L377L 0.13 TCGA-XF-A8HD-01 9 124536670 124536670 C T DAB2IP Silent p.D1005D 0.55 TCGA-XF-A8HD-01 9 126133129 126133129 C T CRB2 Silent p.V599V 0.32 TCGA-XF-A8HD-01 9 127167707 127167707 G C PSMB7 Missense_Mutation p.Q134E 0.08 deleterious(0) possibly_damaging(0.69) TCGA-XF-A8HD-01 9 130213409 130213409 G A RPL12 Intron 0.28 TCGA-XF-A8HD-01 9 131038872 131038872 C G SWI5 Missense_Mutation p.I88M 0.23 tolerated_low_confidence(0.27) benign(0.02) TCGA-XF-A8HD-01 9 131038971 131038971 C G SWI5 Silent p.L121L 0.24 TCGA-XF-A8HD-01 9 131114989 131114989 C A SLC27A4 Missense_Mutation p.S317Y 0.22 deleterious(0) probably_damaging(0.967) TCGA-XF-A8HD-01 9 131255075 131255075 G C ODF2 Missense_Mutation p.E581D 0.24 deleterious(0.01) possibly_damaging(0.779) TCGA-XF-A8HD-01 9 131345045 131345045 C G SPTAN1 Missense_Mutation p.L575V 0.26 deleterious(0.01) possibly_damaging(0.888) TCGA-XF-A8HD-01 9 131483952 131483952 G A ZDHHC12 Silent p.L154L 0.24 TCGA-XF-A8HD-01 9 138413309 138413309 G A LCN1 5'UTR 0.22 TCGA-XF-A8HD-01 9 140126541 140126541 C A SLC34A3 Missense_Mutation p.P35T 0.25 tolerated(0.3) benign(0.027) TCGA-XF-A8HD-01 9 140509226 140509226 G C ARRDC1 Missense_Mutation p.K337N 0.08 deleterious(0.04) possibly_damaging(0.69) TCGA-XF-A8HD-01 9 16870693 16870693 C G BNC2 5'UTR 0.45 TCGA-XF-A8HD-01 9 20413850 20413850 G A MLLT3 Missense_Mutation p.H332Y 0.45 deleterious(0.01) benign(0.026) TCGA-XF-A8HD-01 9 32457143 32457143 C T DDX58 Missense_Mutation p.D919N 0.19 tolerated(0.09) benign(0.044) TCGA-XF-A8HD-01 9 69416137 69416137 C T ANKRD20A4 Nonsense_Mutation p.Q362* 0.50 TCGA-XF-A8HD-01 9 79324009 79324009 C T PRUNE2 Missense_Mutation p.D1061N 0.45 tolerated(0.41) benign(0.025) TCGA-XF-A8HD-01 9 82189798 82189798 G C TLE4 Missense_Mutation p.E52Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 9 90264980 90264980 G A DAPK1 Missense_Mutation p.D525N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A8HD-01 9 92006248 92006250 GAA - SEMA4D In_Frame_Del p.F235del 0.15 TCGA-XF-A8HD-01 9 96025973 96025973 C A WNK2 Missense_Mutation p.S1179Y 0.31 unknown(0) TCGA-XF-A8HD-01 X 112022384 112022384 G A AMOT Nonsense_Mutation p.Q1000* 0.46 TCGA-XF-A8HD-01 X 153760272 153760272 C T G6PD Silent p.K527K 0.67 TCGA-XF-A8HD-01 X 19013064 19013064 G C GPR64 Missense_Mutation p.S940C 0.59 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HD-01 X 20190959 20190959 C T RPS6KA3 Missense_Mutation p.D420N 0.56 deleterious(0.04) benign(0.133) TCGA-XF-A8HD-01 X 40506481 40506481 C T CXorf38 Intron 0.60 TCGA-XF-A8HD-01 X 47430318 47430318 C A ARAF Silent p.L531L 0.50 TCGA-XF-A8HD-01 X 50377490 50377490 G T SHROOM4 Missense_Mutation p.S528Y 0.65 deleterious(0.05) possibly_damaging(0.541) TCGA-XF-A8HD-01 X 53430541 53430541 C T SMC1A Missense_Mutation p.E793K 0.67 deleterious(0) probably_damaging(1) TCGA-XF-A8HD-01 X 54482997 54482997 G C FGD1 Missense_Mutation p.S547C 0.70 deleterious(0) probably_damaging(0.957) TCGA-XF-A8HD-01 X 64139918 64139918 C T ZC4H2 Intron 0.50 TCGA-XF-A8HD-01 X 65390493 65390493 C A HEPH Silent p.V81V 0.45 TCGA-XF-A8HD-01 Y 24327051 24327051 C G RBMY1F Missense_Mutation p.K22N 0.12 deleterious(0.03) possibly_damaging(0.779) TCGA-XF-A8HE-01 10 120801902 120801902 C T EIF3A Missense_Mutation p.D1044N 0.16 deleterious(0) possibly_damaging(0.637) TCGA-XF-A8HE-01 10 120871423 120871423 C T FAM45A Silent p.F105F 0.18 TCGA-XF-A8HE-01 10 122630715 122630715 G C WDR11 Missense_Mutation p.R443T 0.50 tolerated(0.42) benign(0) TCGA-XF-A8HE-01 10 126671870 126671870 C T ZRANB1 Nonsense_Mutation p.Q559* 0.15 TCGA-XF-A8HE-01 10 20290724 20290724 C G PLXDC2 Missense_Mutation p.Q45E 0.11 tolerated_low_confidence(0.39) benign(0.005) TCGA-XF-A8HE-01 10 26993640 26993640 C A PDSS1 Missense_Mutation p.S66Y 0.18 tolerated_low_confidence(0.14) benign(0.312) TCGA-XF-A8HE-01 10 28250520 28250520 G A ARMC4 Nonsense_Mutation p.Q455* 0.06 TCGA-XF-A8HE-01 10 33495214 33495214 C T NRP1 Intron 0.15 TCGA-XF-A8HE-01 10 35928534 35928534 C T FZD8 Silent p.K608K 0.38 TCGA-XF-A8HE-01 10 69583135 69583135 C T DNAJC12 Missense_Mutation p.A32T 0.07 tolerated(0.18) benign(0.085) TCGA-XF-A8HE-01 10 69672522 69672522 C A SIRT1 Nonsense_Mutation p.S550* 0.40 TCGA-XF-A8HE-01 10 8006971 8006971 C A TAF3 Missense_Mutation p.P500T 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-XF-A8HE-01 11 1016061 1016061 G A MUC6 Missense_Mutation p.A2247V 0.20 benign(0.003) TCGA-XF-A8HE-01 11 116633853 116633853 G C BUD13 Missense_Mutation p.S151C 0.24 deleterious(0) probably_damaging(0.95) TCGA-XF-A8HE-01 11 117710415 117710415 C G FXYD6 Intron 0.21 TCGA-XF-A8HE-01 11 117710499 117710499 C T FXYD6 3'UTR 0.14 TCGA-XF-A8HE-01 11 119185559 119185559 G A MCAM Silent p.I128I 0.32 TCGA-XF-A8HE-01 11 18320406 18320406 C A HPS5 Missense_Mutation p.R366I 0.16 deleterious(0) probably_damaging(0.975) TCGA-XF-A8HE-01 11 20127225 20127225 C T NAV2 Missense_Mutation p.H2324Y 0.13 deleterious(0) probably_damaging(0.956) TCGA-XF-A8HE-01 11 35515744 35515744 C G PAMR1 Missense_Mutation p.Q50H 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-XF-A8HE-01 11 45924599 45924599 C T MAPK8IP1 Silent p.I427I 0.16 TCGA-XF-A8HE-01 11 46801761 46801761 C G CKAP5 Missense_Mutation p.D806H 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 11 46924470 46924470 G A LRP4 Silent p.S21S 0.10 TCGA-XF-A8HE-01 11 541564 541564 C T LRRC56 Missense_Mutation p.R69W 0.19 deleterious(0) possibly_damaging(0.891) TCGA-XF-A8HE-01 11 56143793 56143793 G A OR8U1 Missense_Mutation p.E232K 0.21 deleterious(0.05) possibly_damaging(0.7) TCGA-XF-A8HE-01 11 57958893 57958893 G A OR9Q2 Missense_Mutation p.A311T 0.17 tolerated(0.06) benign(0.01) TCGA-XF-A8HE-01 11 59245779 59245779 G A OR4D10 Missense_Mutation p.E293K 0.13 deleterious(0.02) benign(0.103) TCGA-XF-A8HE-01 11 59245784 59245784 G A OR4D10 Missense_Mutation p.M294I 0.13 deleterious(0.04) benign(0.008) TCGA-XF-A8HE-01 11 59245827 59245827 G A OR4D10 Missense_Mutation p.D309N 0.26 tolerated(0.19) benign(0.002) TCGA-XF-A8HE-01 11 59807968 59807968 G A OOSP2 Silent p.L12L 0.17 TCGA-XF-A8HE-01 11 60708718 60708718 C T SLC15A3 Silent p.L384L 0.21 TCGA-XF-A8HE-01 11 611648 611648 G C PHRF1 Missense_Mutation p.K1606N 0.12 deleterious(0) possibly_damaging(0.895) TCGA-XF-A8HE-01 11 611657 611657 G C PHRF1 Missense_Mutation p.E1609D 0.09 deleterious(0) possibly_damaging(0.801) TCGA-XF-A8HE-01 11 61981266 61981266 G C SCGB2A1 3'UTR 0.13 TCGA-XF-A8HE-01 11 62295814 62295814 G C AHNAK Missense_Mutation p.I2025M 0.16 possibly_damaging(0.817) TCGA-XF-A8HE-01 11 65004179 65004179 C G SLC22A20 RNA 0.20 TCGA-XF-A8HE-01 11 65004195 65004195 C A SLC22A20 RNA 0.24 TCGA-XF-A8HE-01 11 65034085 65034085 G T POLA2 Nonsense_Mutation p.E38* 0.20 TCGA-XF-A8HE-01 11 65034151 65034151 G A POLA2 Missense_Mutation p.E60K 0.21 deleterious(0.03) benign(0.41) TCGA-XF-A8HE-01 11 66100125 66100125 G C RIN1 Silent p.L658L 0.09 TCGA-XF-A8HE-01 11 74985189 74985189 G C ARRB1 Missense_Mutation p.N281K 0.16 deleterious(0.02) possibly_damaging(0.624) TCGA-XF-A8HE-01 11 75133563 75133563 G A KLHL35 3'UTR 0.12 TCGA-XF-A8HE-01 11 82872425 82872425 C A PCF11 Missense_Mutation p.N83K 0.33 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 11 82880510 82880510 C T PCF11 Nonsense_Mutation p.Q1045* 0.28 TCGA-XF-A8HE-01 11 85375196 85375196 C T CREBZF Missense_Mutation p.E242K 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-XF-A8HE-01 11 94354146 94354146 C G PIWIL4 Silent p.L849L 0.09 TCGA-XF-A8HE-01 12 108932784 108932784 G A SART3 Nonsense_Mutation p.Q330* 0.20 TCGA-XF-A8HE-01 12 11214242 11214242 C G TAS2R46 Missense_Mutation p.D218H 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 12 123057809 123057809 G A KNTC1 Missense_Mutation p.E754K 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-XF-A8HE-01 12 123187756 123187756 G T HCAR2 Missense_Mutation p.F25L 0.18 tolerated(0.7) benign(0.001) TCGA-XF-A8HE-01 12 123793864 123793864 G A SBNO1 Missense_Mutation p.S1208L 0.13 tolerated(0.06) benign(0.04) TCGA-XF-A8HE-01 12 124102401 124102401 C A DDX55 Missense_Mutation p.F382L 0.15 deleterious(0.01) benign(0.162) TCGA-XF-A8HE-01 12 15073965 15073965 C T ERP27 Silent p.L117L 0.26 TCGA-XF-A8HE-01 12 21918938 21918938 C T KCNJ8 Missense_Mutation p.E332K 0.22 tolerated(1) benign(0.233) TCGA-XF-A8HE-01 12 34175543 34175543 G C ALG10 Missense_Mutation p.Q3H 0.16 deleterious(0.04) benign(0.155) TCGA-XF-A8HE-01 12 49441766 49441767 - G KMT2D Frame_Shift_Ins p.Y1407Lfs*25 0.24 TCGA-XF-A8HE-01 12 49445666 49445666 G A KMT2D Silent p.F600F 0.21 TCGA-XF-A8HE-01 12 49446493 49446493 C A KMT2D Splice_Site p.X371_splice 0.22 TCGA-XF-A8HE-01 12 52309965 52309965 C T ACVRL1 Silent p.I398I 0.15 TCGA-XF-A8HE-01 12 53874971 53874971 G C MAP3K12 Missense_Mutation p.P892A 0.25 deleterious_low_confidence(0) benign(0) TCGA-XF-A8HE-01 12 53875751 53875751 G C MAP3K12 Missense_Mutation p.P852A 0.23 tolerated_low_confidence(0.09) benign(0) TCGA-XF-A8HE-01 12 53876881 53876881 G A MAP3K12 Missense_Mutation p.S569L 0.18 tolerated(0.16) benign(0.144) TCGA-XF-A8HE-01 12 56555198 56555198 G A MYL6 3'UTR 0.19 TCGA-XF-A8HE-01 12 6703684 6703684 C T CHD4 Missense_Mutation p.E752K 0.19 deleterious(0) benign(0.089) TCGA-XF-A8HE-01 12 6788158 6788158 C G ZNF384 Missense_Mutation p.Q86H 0.29 tolerated(0.09) probably_damaging(0.991) TCGA-XF-A8HE-01 12 68709961 68709961 G A MDM1 Silent p.L360L 0.12 TCGA-XF-A8HE-01 12 8073975 8073975 C T SLC2A3 3'UTR 0.08 TCGA-XF-A8HE-01 12 92537898 92537898 C T BTG1 Silent p.T158T 0.12 TCGA-XF-A8HE-01 12 93202920 93202920 C T EEA1 Missense_Mutation p.D738N 0.23 tolerated(0.18) benign(0.007) TCGA-XF-A8HE-01 13 103446062 103446062 C G KDELC1 Missense_Mutation p.Q161H 0.11 tolerated(0.16) benign(0.009) TCGA-XF-A8HE-01 13 114285953 114285953 C G TFDP1 Missense_Mutation p.Q68E 0.12 deleterious(0.03) benign(0.217) TCGA-XF-A8HE-01 13 31540437 31540437 G A TEX26 Missense_Mutation p.R183Q 0.14 deleterious(0.02) possibly_damaging(0.83) TCGA-XF-A8HE-01 13 46924404 46924404 G A KIAA0226L Silent p.I471I 0.38 TCGA-XF-A8HE-01 13 47409525 47409525 G C HTR2A Missense_Mutation p.S288C 0.12 deleterious(0.05) probably_damaging(0.998) TCGA-XF-A8HE-01 13 47409663 47409663 G A HTR2A Missense_Mutation p.S242L 0.08 deleterious(0) benign(0.082) TCGA-XF-A8HE-01 13 50586722 50586722 G C TRIM13 Missense_Mutation p.D219H 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 13 53250364 53250364 G A SUGT1 Splice_Site p.X242_splice 0.21 TCGA-XF-A8HE-01 13 95117942 95117942 G C DCT Missense_Mutation p.P270A 0.21 deleterious(0.04) possibly_damaging(0.5) TCGA-XF-A8HE-01 13 96589319 96589319 C T UGGT2 Missense_Mutation p.M612I 0.16 tolerated(0.05) benign(0.003) TCGA-XF-A8HE-01 14 21024580 21024580 C T RNASE9 3'UTR 0.19 TCGA-XF-A8HE-01 14 21360176 21360176 G C RNASE3 Missense_Mutation p.D111H 0.22 deleterious(0.03) benign(0.046) TCGA-XF-A8HE-01 14 21681248 21681248 G C HNRNPC Missense_Mutation p.P145A 0.19 tolerated(0.1) benign(0.023) TCGA-XF-A8HE-01 14 23354069 23354069 C T REM2 Missense_Mutation p.S97L 0.15 tolerated(0.28) probably_damaging(0.996) TCGA-XF-A8HE-01 14 23946430 23946430 G A NGDN Missense_Mutation p.M245I 0.20 tolerated(0.09) possibly_damaging(0.882) TCGA-XF-A8HE-01 14 32559836 32559836 C G ARHGAP5 5'UTR 0.17 TCGA-XF-A8HE-01 14 35233926 35233926 C A BAZ1A Nonsense_Mutation p.E1255* 0.18 TCGA-XF-A8HE-01 14 45587268 45587268 C T FKBP3 Missense_Mutation p.E195K 0.13 deleterious(0.04) benign(0.041) TCGA-XF-A8HE-01 14 45587274 45587274 C T FKBP3 Missense_Mutation p.E193K 0.11 tolerated(0.08) possibly_damaging(0.884) TCGA-XF-A8HE-01 14 45623965 45623965 G C FANCM Missense_Mutation p.E417Q 0.20 tolerated(0.06) benign(0.017) TCGA-XF-A8HE-01 14 52735213 52735213 G C PTGDR Silent p.A227A 0.11 TCGA-XF-A8HE-01 14 64588826 64588826 G A SYNE2 Missense_Mutation p.D4419N 0.09 benign(0.01) TCGA-XF-A8HE-01 14 64936098 64936098 C G AKAP5 Nonsense_Mutation p.S329* 0.21 TCGA-XF-A8HE-01 14 69853691 69853691 G A ERH Silent p.L67L 0.27 TCGA-XF-A8HE-01 14 77844297 77844297 G C SAMD15 Missense_Mutation p.R179T 0.15 tolerated(1) benign(0) TCGA-XF-A8HE-01 14 92047389 92047389 C T CATSPERB Silent p.A1065A 0.12 TCGA-XF-A8HE-01 15 100211599 100211599 C G MEF2A Intron 0.25 TCGA-XF-A8HE-01 15 24922734 24922734 G A NPAP1 Missense_Mutation p.E574K 0.06 tolerated(0.3) benign(0.44) TCGA-XF-A8HE-01 15 27725925 27725925 C T GABRG3 Missense_Mutation p.T235M 0.19 deleterious(0) probably_damaging(0.992) TCGA-XF-A8HE-01 15 40093774 40093774 G A GPR176 Silent p.L369L 0.19 TCGA-XF-A8HE-01 15 40269014 40269014 G A EIF2AK4 Missense_Mutation p.E740K 0.20 tolerated(0.14) benign(0.102) TCGA-XF-A8HE-01 15 42837403 42837403 C A LRRC57 Nonsense_Mutation p.E184* 0.11 TCGA-XF-A8HE-01 15 42839600 42839600 C T LRRC57 Silent p.G117G 0.23 TCGA-XF-A8HE-01 15 42839711 42839711 C T LRRC57 Silent p.E80E 0.10 TCGA-XF-A8HE-01 15 42840546 42840546 C T LRRC57 Intron 0.18 TCGA-XF-A8HE-01 15 59350651 59350651 C T RNF111 Missense_Mutation p.S423F 0.18 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-XF-A8HE-01 15 59430453 59430453 T C MYO1E Missense_Mutation p.Q1065R 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A8HE-01 15 63967011 63967011 G A HERC1 Missense_Mutation p.S2459L 0.08 possibly_damaging(0.713) TCGA-XF-A8HE-01 15 66625378 66625378 G C DIS3L Missense_Mutation p.D965H 0.10 tolerated(0.28) benign(0.032) TCGA-XF-A8HE-01 15 67457593 67457593 C G SMAD3 Missense_Mutation p.L135V 0.17 deleterious(0.03) benign(0.126) TCGA-XF-A8HE-01 15 69718506 69718506 G C KIF23 Missense_Mutation p.E278Q 0.15 tolerated(0.14) benign(0.34) TCGA-XF-A8HE-01 15 72534268 72534268 G T PARP6 Missense_Mutation p.D588E 0.14 tolerated(0.36) probably_damaging(0.996) TCGA-XF-A8HE-01 15 77425465 77425465 C G PEAK1 Missense_Mutation p.G1320A 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-XF-A8HE-01 15 86122402 86122402 C T AKAP13 Missense_Mutation p.S368F 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-XF-A8HE-01 15 86123406 86123406 C T AKAP13 Missense_Mutation p.P703S 0.10 tolerated_low_confidence(0.13) benign(0.306) TCGA-XF-A8HE-01 15 86123641 86123641 C T AKAP13 Missense_Mutation p.S781L 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-XF-A8HE-01 15 86123707 86123707 C G AKAP13 Missense_Mutation p.S803C 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.855) TCGA-XF-A8HE-01 15 86940643 86940643 G C AGBL1 Missense_Mutation p.E761D 0.18 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 15 89801991 89801991 G C FANCI Silent p.L47L 0.25 TCGA-XF-A8HE-01 15 91519967 91519967 C G PRC1 Missense_Mutation p.R381P 0.04 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HE-01 16 10840997 10840997 C T NUBP1 Intron 0.12 TCGA-XF-A8HE-01 16 19474639 19474639 C G TMC5 Missense_Mutation p.R396G 0.15 tolerated(0.38) benign(0.001) TCGA-XF-A8HE-01 16 20430576 20430576 C G ACSM5 Missense_Mutation p.Q148E 0.11 deleterious(0) probably_damaging(0.953) TCGA-XF-A8HE-01 16 2161373 2161373 C T PKD1 Silent p.L1265L 0.29 TCGA-XF-A8HE-01 16 2233936 2233936 C G CASKIN1 Missense_Mutation p.E475Q 0.07 possibly_damaging(0.479) TCGA-XF-A8HE-01 16 2256037 2256037 C T MLST8 5'UTR 0.18 TCGA-XF-A8HE-01 16 23080049 23080049 G A USP31 Missense_Mutation p.S1126F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.553) TCGA-XF-A8HE-01 16 2345606 2345606 C G ABCA3 Missense_Mutation p.R800T 0.04 deleterious(0.03) benign(0.001) TCGA-XF-A8HE-01 16 2546109 2546109 C T RP11-20I23.1 5'UTR 0.19 TCGA-XF-A8HE-01 16 27078353 27078353 G A C16orf82 RNA 0.21 TCGA-XF-A8HE-01 16 27561184 27561184 C T GTF3C1 Missense_Mutation p.E10K 0.12 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HE-01 16 27689179 27689179 G T KIAA0556 Missense_Mutation p.G224C 0.10 deleterious(0) possibly_damaging(0.823) TCGA-XF-A8HE-01 16 28892251 28892251 G A ATP2A1 Missense_Mutation p.E79K 0.16 deleterious(0) probably_damaging(0.959) TCGA-XF-A8HE-01 16 30581209 30581209 C G ZNF688 3'UTR 0.11 TCGA-XF-A8HE-01 16 30664700 30664700 G A PRR14 Silent p.E173E 0.16 TCGA-XF-A8HE-01 16 69154325 69154325 C G CHTF8 Missense_Mutation p.E3Q 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-XF-A8HE-01 16 71610326 71610326 G A TAT 5'UTR 0.22 TCGA-XF-A8HE-01 17 1585557 1585557 G A PRPF8 Silent p.L100L 0.18 TCGA-XF-A8HE-01 17 26951356 26951356 G T KIAA0100 Missense_Mutation p.F1549L 0.12 deleterious(0) possibly_damaging(0.594) TCGA-XF-A8HE-01 17 27901744 27901744 G A GIT1 Silent p.I763I 0.22 TCGA-XF-A8HE-01 17 28750667 28750667 C T CPD Missense_Mutation p.H601Y 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 17 37564616 37564616 C T MED1 Silent p.Q1286Q 0.23 TCGA-XF-A8HE-01 17 40828479 40828479 C T PLEKHH3 Missense_Mutation p.E35K 0.18 tolerated_low_confidence(0.25) unknown(0) TCGA-XF-A8HE-01 17 41020476 41020476 C G AOC4P RNA 0.43 TCGA-XF-A8HE-01 17 41107902 41107902 C G AARSD1 Missense_Mutation p.E251Q 0.12 tolerated(0.35) benign(0.002) TCGA-XF-A8HE-01 17 41345216 41345216 C G NBR1 Missense_Mutation p.I393M 0.23 deleterious(0.04) benign(0.265) TCGA-XF-A8HE-01 17 45788151 45788151 C G TBKBP1 3'UTR 0.37 TCGA-XF-A8HE-01 17 58308885 58308885 G C USP32 Intron 0.18 TCGA-XF-A8HE-01 17 59858312 59858312 C G BRIP1 Missense_Mutation p.Q561H 0.19 tolerated(0.1) benign(0.029) TCGA-XF-A8HE-01 17 60767662 60767662 G A MRC2 Silent p.Q1296Q 0.19 TCGA-XF-A8HE-01 17 61769675 61769675 G A MAP3K3 Silent p.T547T 0.08 TCGA-XF-A8HE-01 17 62121216 62121216 G T ERN1 3'UTR 0.44 TCGA-XF-A8HE-01 17 66533543 66533543 G A FAM20A 3'UTR 0.14 TCGA-XF-A8HE-01 17 74673720 74673720 C T MXRA7 Missense_Mutation p.E189K 0.16 probably_damaging(0.956) TCGA-XF-A8HE-01 17 74936489 74936489 C T MGAT5B Silent p.F539F 0.16 TCGA-XF-A8HE-01 17 76568866 76568866 C G DNAH17 Missense_Mutation p.M152I 0.18 benign(0.006) TCGA-XF-A8HE-01 17 77082454 77082454 C G ENGASE 3'UTR 0.13 TCGA-XF-A8HE-01 17 79164844 79164844 C T AZI1 Missense_Mutation p.E936K 0.18 deleterious(0) benign(0.363) TCGA-XF-A8HE-01 17 79226238 79226238 C G SLC38A10 Missense_Mutation p.E568Q 0.05 tolerated(0.27) possibly_damaging(0.833) TCGA-XF-A8HE-01 17 79246428 79246428 C T SLC38A10 Splice_Site p.X305_splice 0.15 TCGA-XF-A8HE-01 17 79804455 79804455 G A P4HB Silent p.L302L 0.12 TCGA-XF-A8HE-01 17 80684939 80684939 G A FN3KRP Silent p.E274E 0.19 TCGA-XF-A8HE-01 18 13056697 13056697 G T CEP192 Missense_Mutation p.G1370W 0.18 deleterious(0) probably_damaging(0.995) TCGA-XF-A8HE-01 18 13103558 13103558 C T CEP192 Silent p.L2308L 0.04 TCGA-XF-A8HE-01 18 29444637 29444637 C T TRAPPC8 Missense_Mutation p.D900N 0.19 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HE-01 18 32887660 32887660 G A ZNF271 RNA 0.16 TCGA-XF-A8HE-01 18 33610797 33610797 G C RPRD1A Missense_Mutation p.L154V 0.16 tolerated(0.32) benign(0.002) TCGA-XF-A8HE-01 18 46570560 46570560 C T DYM Silent p.L625L 0.12 TCGA-XF-A8HE-01 18 51056940 51056940 G T DCC Nonsense_Mutation p.E1421* 0.11 TCGA-XF-A8HE-01 18 55359049 55359049 G C ATP8B1 Missense_Mutation p.L404V 0.13 deleterious(0) probably_damaging(0.957) TCGA-XF-A8HE-01 18 60036647 60036647 G A TNFRSF11A Silent p.G499G 0.14 TCGA-XF-A8HE-01 18 61260118 61260118 C T SERPINB13 Missense_Mutation p.H129Y 0.18 tolerated(0.08) probably_damaging(0.968) TCGA-XF-A8HE-01 18 67992887 67992887 G A SOCS6 Missense_Mutation p.G328E 0.17 tolerated_low_confidence(0.09) possibly_damaging(0.717) TCGA-XF-A8HE-01 18 72234566 72234566 C T CNDP1 Silent p.F218F 0.09 TCGA-XF-A8HE-01 18 77805982 77805982 G A RBFA Missense_Mutation p.E287K 0.12 deleterious(0.03) benign(0.05) TCGA-XF-A8HE-01 18 8718482 8718482 G A SOGA2 Missense_Mutation p.D12N 0.12 deleterious(0) probably_damaging(0.959) TCGA-XF-A8HE-01 19 1043174 1043174 C T ABCA7 Silent p.L238L 0.15 TCGA-XF-A8HE-01 19 10665805 10665805 G A KRI1 Missense_Mutation p.S586L 0.13 tolerated(0.33) benign(0.002) TCGA-XF-A8HE-01 19 10675660 10675660 C T KRI1 Silent p.L79L 0.19 TCGA-XF-A8HE-01 19 11944459 11944459 G C ZNF440 3'UTR 0.22 TCGA-XF-A8HE-01 19 12868835 12868835 C G BEST2 Missense_Mutation p.P492A 0.23 tolerated_low_confidence(0.12) benign(0.034) TCGA-XF-A8HE-01 19 17449403 17449403 C T GTPBP3 Silent p.F148F 0.24 TCGA-XF-A8HE-01 19 19206924 19206924 C G SLC25A42 5'UTR 0.11 TCGA-XF-A8HE-01 19 19626097 19626097 C T TSSK6 Missense_Mutation p.R47Q 0.08 tolerated(0.19) benign(0.019) TCGA-XF-A8HE-01 19 20011785 20011785 C G ZNF93 5'Flank 0.15 TCGA-XF-A8HE-01 19 36206267 36206267 C T ZBTB32 Missense_Mutation p.P247S 0.20 deleterious(0) possibly_damaging(0.641) TCGA-XF-A8HE-01 19 36594781 36594781 C T WDR62 Missense_Mutation p.P1351S 0.28 tolerated_low_confidence(0.36) benign(0.003) TCGA-XF-A8HE-01 19 37975802 37975802 T C ZNF570 Silent p.I426I 0.16 TCGA-XF-A8HE-01 19 39361497 39361497 C T RINL Missense_Mutation p.R246K 0.23 tolerated(0.88) benign(0.013) TCGA-XF-A8HE-01 19 41354584 41354584 C T CYP2A6 Missense_Mutation p.R143Q 0.11 possibly_damaging(0.645) TCGA-XF-A8HE-01 19 41626286 41626286 C T CYP2F1 Silent p.V123V 0.20 TCGA-XF-A8HE-01 19 41627484 41627484 C G CYP2F1 Missense_Mutation p.I202M 0.20 tolerated(0.56) possibly_damaging(0.465) TCGA-XF-A8HE-01 19 42265179 42265179 C G CEA Missense_Mutation p.I149M 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 19 42270193 42270193 C T CEACAM6 3'UTR 0.26 TCGA-XF-A8HE-01 19 42791187 42791187 G T CIC Nonsense_Mutation p.E83* 0.11 TCGA-XF-A8HE-01 19 42791250 42791250 G A CIC Missense_Mutation p.E104K 0.13 benign(0.341) TCGA-XF-A8HE-01 19 42791367 42791367 G A CIC Missense_Mutation p.E143K 0.16 probably_damaging(0.958) TCGA-XF-A8HE-01 19 42791373 42791373 G A CIC Missense_Mutation p.E145K 0.15 possibly_damaging(0.647) TCGA-XF-A8HE-01 19 42791562 42791562 G A CIC Silent p.R181R 0.11 TCGA-XF-A8HE-01 19 42791968 42791968 G A CIC Missense_Mutation p.E258K 0.26 probably_damaging(0.914) TCGA-XF-A8HE-01 19 42801340 42801340 G C PAFAH1B3 Missense_Mutation p.L196V 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-XF-A8HE-01 19 43411884 43411884 G C PSG6 Missense_Mutation p.Q277E 0.19 tolerated(0.38) benign(0.012) TCGA-XF-A8HE-01 19 44276242 44276242 C T KCNN4 Silent p.L243L 0.11 TCGA-XF-A8HE-01 19 46307789 46307789 G A RSPH6A Silent p.F458F 0.10 TCGA-XF-A8HE-01 19 47884535 47884535 C T DHX34 Silent p.I1084I 0.07 TCGA-XF-A8HE-01 19 47951412 47951412 C G SLC8A2 Missense_Mutation p.E473Q 0.22 deleterious(0) probably_damaging(0.989) TCGA-XF-A8HE-01 19 53208236 53208236 G C ZNF611 Nonsense_Mutation p.S691* 0.21 TCGA-XF-A8HE-01 19 53208740 53208740 G C ZNF611 Nonsense_Mutation p.S523* 0.16 TCGA-XF-A8HE-01 19 53209232 53209232 G T ZNF611 Nonsense_Mutation p.S359* 0.18 TCGA-XF-A8HE-01 19 53209507 53209507 G C ZNF611 Silent p.L267L 0.14 TCGA-XF-A8HE-01 19 53209742 53209742 G A ZNF611 Missense_Mutation p.S189L 0.14 tolerated(0.3) benign(0.001) TCGA-XF-A8HE-01 19 54941065 54941065 C G TTYH1 Silent p.L271L 0.19 TCGA-XF-A8HE-01 19 5654145 5654145 G A SAFB Missense_Mutation p.E534K 0.06 tolerated(0.77) benign(0.366) TCGA-XF-A8HE-01 19 5654393 5654393 G A SAFB Missense_Mutation p.E561K 0.08 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HE-01 19 5668276 5668276 G T SAFB Missense_Mutation p.D910Y 0.13 tolerated_low_confidence(0.29) unknown(0) TCGA-XF-A8HE-01 19 58190138 58190138 C T ZSCAN4 Silent p.I389I 0.10 TCGA-XF-A8HE-01 19 6364562 6364562 C T CLPP Missense_Mutation p.S156F 0.36 deleterious(0) probably_damaging(0.996) TCGA-XF-A8HE-01 19 7811350 7811350 G C CD209 Silent p.V58V 0.16 TCGA-XF-A8HE-01 19 8196471 8196471 C T FBN3 Missense_Mutation p.E653K 0.10 deleterious(0.03) possibly_damaging(0.515) TCGA-XF-A8HE-01 19 8995951 8995951 C T MUC16 Intron 0.22 TCGA-XF-A8HE-01 1 10521675 10521675 C T DFFA Missense_Mutation p.E290K 0.14 tolerated(0.42) benign(0.001) TCGA-XF-A8HE-01 1 10706341 10706341 G T CASZ1 Missense_Mutation p.F1180L 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A8HE-01 1 108700128 108700128 G A SLC25A24 Nonsense_Mutation p.R209* 0.26 TCGA-XF-A8HE-01 1 110129495 110129495 G C GNAI3 Missense_Mutation p.E289Q 0.24 deleterious(0.01) benign(0.127) TCGA-XF-A8HE-01 1 110458295 110458295 G C CSF1 Missense_Mutation p.E68Q 0.20 tolerated(0.08) benign(0.198) TCGA-XF-A8HE-01 1 117617968 117617968 G C TTF2 Silent p.L254L 0.19 TCGA-XF-A8HE-01 1 145537734 145537734 C T ITGA10 Intron 0.23 TCGA-XF-A8HE-01 1 152085036 152085036 C T TCHH Silent p.R219R 0.15 TCGA-XF-A8HE-01 1 153276439 153276439 G T PGLYRP3 Silent p.I141I 0.13 TCGA-XF-A8HE-01 1 153615862 153615862 G A CHTOP Intron 0.12 TCGA-XF-A8HE-01 1 153921109 153921109 G A CRTC2 Silent p.F562F 0.25 TCGA-XF-A8HE-01 1 155785648 155785648 G C GON4L Nonsense_Mutation p.S370* 0.20 TCGA-XF-A8HE-01 1 156038135 156038135 G A RAB25 Missense_Mutation p.R105Q 0.18 deleterious_low_confidence(0.01) benign(0.349) TCGA-XF-A8HE-01 1 156084823 156084823 C T LMNA Silent p.L38L 0.60 TCGA-XF-A8HE-01 1 156105073 156105073 C G LMNA Silent p.L302L 0.19 TCGA-XF-A8HE-01 1 156314442 156314442 C T TSACC Nonsense_Mutation p.Q36* 0.20 TCGA-XF-A8HE-01 1 159166906 159166906 C T CADM3 Intron 0.25 TCGA-XF-A8HE-01 1 159170712 159170712 G C CADM3 Nonstop_Mutation p.*433Yext*128 0.17 TCGA-XF-A8HE-01 1 160011558 160011558 G C KCNJ10 Missense_Mutation p.F255L 0.13 tolerated(0.63) probably_damaging(0.983) TCGA-XF-A8HE-01 1 160011626 160011626 G A KCNJ10 Nonsense_Mutation p.Q233* 0.19 TCGA-XF-A8HE-01 1 160011630 160011630 G A KCNJ10 Silent p.L231L 0.19 TCGA-XF-A8HE-01 1 161143525 161143525 G C B4GALT3 Intron 0.23 TCGA-XF-A8HE-01 1 166927022 166927022 C T ILDR2 Silent p.E121E 0.11 TCGA-XF-A8HE-01 1 169511747 169511747 C T F5 Missense_Mutation p.E861K 0.19 tolerated(0.29) benign(0.02) TCGA-XF-A8HE-01 1 1718796 1718796 C T GNB1 Missense_Mutation p.D333N 0.22 deleterious(0.04) probably_damaging(0.943) TCGA-XF-A8HE-01 1 1718829 1718829 C T GNB1 Missense_Mutation p.D322N 0.21 tolerated(0.16) benign(0.091) TCGA-XF-A8HE-01 1 182369215 182369215 C G TEDDM1 Missense_Mutation p.V136L 0.10 tolerated(0.08) benign(0.252) TCGA-XF-A8HE-01 1 200959349 200959349 C T KIF21B Missense_Mutation p.E983K 0.17 deleterious(0) probably_damaging(0.986) TCGA-XF-A8HE-01 1 204380234 204380234 G C PPP1R15B Silent p.V102V 0.21 TCGA-XF-A8HE-01 1 204913470 204913470 G A NFASC Nonsense_Mutation p.W9* 0.21 TCGA-XF-A8HE-01 1 214170240 214170240 C T PROX1 Missense_Mutation p.S121F 0.15 deleterious(0.02) possibly_damaging(0.873) TCGA-XF-A8HE-01 1 223395498 223395498 G A SUSD4 3'UTR 0.16 TCGA-XF-A8HE-01 1 223940629 223940629 C T CAPN2 Missense_Mutation p.S369F 0.21 deleterious(0) probably_damaging(0.974) TCGA-XF-A8HE-01 1 237947771 237947771 G C RYR2 Missense_Mutation p.L4253F 0.12 benign(0.004) TCGA-XF-A8HE-01 1 247079667 247079667 C T AHCTF1 Missense_Mutation p.G60D 0.23 deleterious(0.04) probably_damaging(0.977) TCGA-XF-A8HE-01 1 248343431 248343431 C T OR2M2 Silent p.L48L 0.20 TCGA-XF-A8HE-01 1 26644666 26644666 G C UBXN11 5'UTR 0.28 TCGA-XF-A8HE-01 1 27706475 27706475 G A CD164L2 3'UTR 0.10 TCGA-XF-A8HE-01 1 28599209 28599209 G A SESN2 Missense_Mutation p.E219K 0.15 tolerated(0.07) benign(0.43) TCGA-XF-A8HE-01 1 31421979 31421979 G A PUM1 Intron 0.19 TCGA-XF-A8HE-01 1 32658299 32658299 G A TXLNA Silent p.L375L 0.16 TCGA-XF-A8HE-01 1 32672200 32672200 G C IQCC Missense_Mutation p.E173Q 0.07 deleterious(0.03) probably_damaging(0.996) TCGA-XF-A8HE-01 1 32739964 32739964 G A LCK Missense_Mutation p.D12N 0.14 tolerated_low_confidence(0.13) benign(0.33) TCGA-XF-A8HE-01 1 39796965 39796965 G C MACF1 Intron 0.22 TCGA-XF-A8HE-01 1 39824490 39824490 C T MACF1 Missense_Mutation p.S1960L 0.26 benign(0.02) TCGA-XF-A8HE-01 1 44169751 44169751 G A KDM4A Missense_Mutation p.E1008K 0.11 deleterious(0) possibly_damaging(0.899) TCGA-XF-A8HE-01 1 46532696 46532696 G C PIK3R3 Missense_Mutation p.L128V 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HE-01 1 47131005 47131005 C G ATPAF1 Missense_Mutation p.E123Q 0.21 deleterious(0.04) possibly_damaging(0.729) TCGA-XF-A8HE-01 1 47505149 47505149 G A CYP4X1 Missense_Mutation p.E340K 0.23 tolerated(0.08) benign(0.101) TCGA-XF-A8HE-01 1 62739378 62739378 C G KANK4 Missense_Mutation p.Q466H 0.18 tolerated(0.14) benign(0.048) TCGA-XF-A8HE-01 1 78340626 78340626 C G FAM73A Silent p.L592L 0.14 TCGA-XF-A8HE-01 1 86591886 86591886 G C COL24A1 Missense_Mutation p.L45V 0.13 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HE-01 1 87104624 87104624 C G RP4-651E10.4 Intron 0.15 TCGA-XF-A8HE-01 1 90048718 90048718 C T LRRC8B Missense_Mutation p.S170L 0.17 deleterious(0) probably_damaging(0.966) TCGA-XF-A8HE-01 1 90049964 90049964 C T LRRC8B Silent p.V585V 0.17 TCGA-XF-A8HE-01 1 906287 906287 C T PLEKHN1 Silent p.L171L 0.17 TCGA-XF-A8HE-01 1 92789090 92789090 G A RPAP2 Missense_Mutation p.E205K 0.26 tolerated(0.13) benign(0.017) TCGA-XF-A8HE-01 1 94996084 94996084 G C F3 Missense_Mutation p.L274V 0.13 tolerated(0.1) benign(0.098) TCGA-XF-A8HE-01 1 986943 986943 C T AGRN Silent p.L1827L 0.33 TCGA-XF-A8HE-01 20 25277015 25277015 G C PYGB Missense_Mutation p.E797Q 0.13 tolerated(0.16) benign(0.109) TCGA-XF-A8HE-01 20 42331380 42331380 C G MYBL2 Missense_Mutation p.S401C 0.25 deleterious(0.04) possibly_damaging(0.479) TCGA-XF-A8HE-01 20 62173890 62173890 G A SRMS Silent p.F230F 0.10 TCGA-XF-A8HE-01 20 62737633 62737633 G A NPBWR2 Silent p.F184F 0.12 TCGA-XF-A8HE-01 20 62738020 62738020 G A NPBWR2 Silent p.I55I 0.14 TCGA-XF-A8HE-01 20 62738074 62738074 G A NPBWR2 Silent p.F37F 0.25 TCGA-XF-A8HE-01 21 30445863 30445863 C T CCT8 Missense_Mutation p.E17K 0.05 tolerated(0.07) benign(0.008) TCGA-XF-A8HE-01 21 32519296 32519296 G A TIAM1 Missense_Mutation p.S1131L 0.19 deleterious(0.01) probably_damaging(0.919) TCGA-XF-A8HE-01 21 34107294 34107294 C T PAXBP1 Silent p.V907V 0.08 TCGA-XF-A8HE-01 21 34121010 34121010 C G PAXBP1 Splice_Site p.X575_splice 0.31 TCGA-XF-A8HE-01 21 36088672 36088672 C T CLIC6 Silent p.I651I 0.14 TCGA-XF-A8HE-01 21 37442464 37442464 C T CBR1 Silent p.I17I 0.40 TCGA-XF-A8HE-01 21 37617673 37617673 C A DOPEY2 Missense_Mutation p.S1132Y 0.24 tolerated(0.17) benign(0.009) TCGA-XF-A8HE-01 21 39671789 39671789 G A KCNJ15 Missense_Mutation p.M202I 0.12 tolerated(0.07) benign(0.266) TCGA-XF-A8HE-01 21 39755498 39755498 C T ERG Missense_Mutation p.A430T 0.17 tolerated(0.42) benign(0.002) TCGA-XF-A8HE-01 21 40570949 40570949 G C BRWD1 Missense_Mutation p.S1798C 0.20 tolerated_low_confidence(0.35) benign(0.001) TCGA-XF-A8HE-01 21 45546826 45546826 C T PWP2 Missense_Mutation p.S707L 0.22 tolerated(0.1) benign(0.206) TCGA-XF-A8HE-01 21 45546836 45546836 C T PWP2 Silent p.F710F 0.23 TCGA-XF-A8HE-01 22 20074087 20074087 G C DGCR8 Missense_Mutation p.E201Q 0.10 deleterious(0.01) possibly_damaging(0.791) TCGA-XF-A8HE-01 22 25750642 25750642 G C LRP5L Silent p.V192V 0.19 TCGA-XF-A8HE-01 22 35660934 35660934 C T HMGXB4 Missense_Mutation p.R185W 0.27 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 22 38043271 38043271 C T SH3BP1 Intron 0.14 TCGA-XF-A8HE-01 22 39497351 39497351 C T APOBEC3H Missense_Mutation p.S87F 0.14 tolerated(0.26) benign(0.06) TCGA-XF-A8HE-01 22 39497352 39497352 C A APOBEC3H Silent p.S87S 0.14 TCGA-XF-A8HE-01 22 39710205 39710205 C T RPL3 Silent p.K286K 0.15 TCGA-XF-A8HE-01 22 42393009 42393009 C G SEPT3 3'UTR 0.20 TCGA-XF-A8HE-01 22 43219702 43219702 G C ARFGAP3 Missense_Mutation p.S211C 0.17 deleterious(0.01) benign(0.021) TCGA-XF-A8HE-01 22 43275128 43275128 C T PACSIN2 Silent p.K318K 0.25 TCGA-XF-A8HE-01 22 47089366 47089366 C T CERK Missense_Mutation p.E362K 0.10 tolerated(0.31) benign(0.009) TCGA-XF-A8HE-01 22 50656969 50656969 C T TUBGCP6 Silent p.L1634L 0.28 TCGA-XF-A8HE-01 22 50897990 50897990 G A SBF1 Silent p.S1199S 0.19 TCGA-XF-A8HE-01 22 50962769 50962769 C T SCO2 Silent p.G24G 0.19 TCGA-XF-A8HE-01 2 111881686 111881686 C T BCL2L11 Nonsense_Mutation p.Q122* 0.10 TCGA-XF-A8HE-01 2 11367470 11367470 C G ROCK2 Missense_Mutation p.E260Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HE-01 2 120639722 120639722 C G PTPN4 Missense_Mutation p.Q155E 0.14 deleterious(0.01) benign(0.033) TCGA-XF-A8HE-01 2 152370885 152370885 C T NEB Missense_Mutation p.E7692K 0.16 possibly_damaging(0.78) TCGA-XF-A8HE-01 2 170428200 170428200 C T FASTKD1 Missense_Mutation p.D114N 0.23 tolerated(0.12) probably_damaging(0.992) TCGA-XF-A8HE-01 2 176983854 176983854 C T HOXD10 Silent p.T306T 0.18 TCGA-XF-A8HE-01 2 176996057 176996057 G A HOXD8 Missense_Mutation p.R197K 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-XF-A8HE-01 2 179437922 179437922 G C TTN Missense_Mutation p.P24313A 0.18 TCGA-XF-A8HE-01 2 179443700 179443700 G A TTN Missense_Mutation p.S22686F 0.18 TCGA-XF-A8HE-01 2 179583474 179583474 G A TTN Silent p.L8151L 0.20 TCGA-XF-A8HE-01 2 189871119 189871119 C T COL3A1 Missense_Mutation p.H1048Y 0.06 probably_damaging(0.943) TCGA-XF-A8HE-01 2 201521592 201521592 G C AOX1 Missense_Mutation p.D1035H 0.14 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 2 202149808 202149808 C T CASP8 Nonsense_Mutation p.Q417* 0.24 TCGA-XF-A8HE-01 2 202687551 202687551 G C CDK15 Missense_Mutation p.L156F 0.20 deleterious(0) probably_damaging(0.972) TCGA-XF-A8HE-01 2 203684529 203684529 C T ICA1L Silent p.R151R 0.16 TCGA-XF-A8HE-01 2 213403270 213403270 G C ERBB4 5'UTR 0.16 TCGA-XF-A8HE-01 2 219868711 219868711 C G CCDC108 Missense_Mutation p.E1840Q 0.08 tolerated(0.19) unknown(0) TCGA-XF-A8HE-01 2 219868912 219868912 C T CCDC108 Missense_Mutation p.E1773K 0.09 tolerated(0.28) unknown(0) TCGA-XF-A8HE-01 2 220034310 220034310 G A SLC23A3 Nonsense_Mutation p.Q85* 0.12 TCGA-XF-A8HE-01 2 220102578 220102578 G A GLB1L Silent p.L481L 0.20 TCGA-XF-A8HE-01 2 223423308 223423308 C - SGPP2 Frame_Shift_Del p.Q298Sfs*24 0.13 TCGA-XF-A8HE-01 2 228882210 228882210 C T SPHKAP Silent p.S1120S 0.24 TCGA-XF-A8HE-01 2 233527636 233527636 G A EFHD1 Missense_Mutation p.D143N 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 2 238285527 238285527 G A COL6A3 Silent p.I986I 0.07 TCGA-XF-A8HE-01 2 238296571 238296571 G A COL6A3 Silent p.I322I 0.13 TCGA-XF-A8HE-01 2 238462396 238462396 G A MLPH 3'UTR 0.08 TCGA-XF-A8HE-01 2 25062816 25062816 C G ADCY3 Missense_Mutation p.Q427H 0.10 deleterious(0) probably_damaging(0.987) TCGA-XF-A8HE-01 2 26654847 26654847 C G DRC1 Missense_Mutation p.I287M 0.15 tolerated(0.56) probably_damaging(0.974) TCGA-XF-A8HE-01 2 27249175 27249175 G C MAPRE3 Missense_Mutation p.E269Q 0.06 tolerated(0.11) unknown(0) TCGA-XF-A8HE-01 2 42991141 42991141 G C OXER1 Missense_Mutation p.S60C 0.28 tolerated_low_confidence(0.07) benign(0.068) TCGA-XF-A8HE-01 2 47641437 47641437 C G MSH2 Missense_Mutation p.I274M 0.20 deleterious(0.02) possibly_damaging(0.615) TCGA-XF-A8HE-01 2 55467162 55467162 C T MTIF2 Missense_Mutation p.E619K 0.18 tolerated(0.76) benign(0.009) TCGA-XF-A8HE-01 2 55816047 55816047 C G SMEK2 Missense_Mutation p.E323Q 0.05 tolerated(0.07) possibly_damaging(0.555) TCGA-XF-A8HE-01 2 61344627 61344627 G A KIAA1841 Missense_Mutation p.D631N 0.20 tolerated(0.11) probably_damaging(0.996) TCGA-XF-A8HE-01 2 64685625 64685625 G A LGALSL 3'UTR 0.19 TCGA-XF-A8HE-01 2 74884980 74884980 G A SEMA4F Missense_Mutation p.D120N 0.26 tolerated(0.49) benign(0.312) TCGA-XF-A8HE-01 2 75720543 75720543 G A EVA1A Missense_Mutation p.S93F 0.26 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 2 88828854 88828854 C T TEX37 Silent p.L135L 0.16 TCGA-XF-A8HE-01 2 90108864 90108864 C - IGKV6D-41 Frame_Shift_Del p.Q44Rfs*? 0.17 TCGA-XF-A8HE-01 2 9637342 9637342 C T ADAM17 Missense_Mutation p.E562K 0.16 tolerated(0.42) benign(0.017) TCGA-XF-A8HE-01 3 10146259 10146259 C G FANCD2OS Missense_Mutation p.G67A 0.23 tolerated(0.88) possibly_damaging(0.486) TCGA-XF-A8HE-01 3 101477118 101477118 G T CEP97 Missense_Mutation p.Q556H 0.25 tolerated(0.06) possibly_damaging(0.687) TCGA-XF-A8HE-01 3 121263576 121263576 G A POLQ Missense_Mutation p.S114L 0.16 deleterious(0) possibly_damaging(0.752) TCGA-XF-A8HE-01 3 127325611 127325611 C T MCM2 Missense_Mutation p.S351F 0.13 tolerated(0.74) possibly_damaging(0.753) TCGA-XF-A8HE-01 3 127842558 127842558 C G RUVBL1 Missense_Mutation p.E4Q 0.15 tolerated(0.17) benign(0.128) TCGA-XF-A8HE-01 3 141497550 141497550 G C GRK7 Missense_Mutation p.E142Q 0.16 tolerated(0.52) benign(0.371) TCGA-XF-A8HE-01 3 149093237 149093237 C T TM4SF1 Missense_Mutation p.E136K 0.19 tolerated(0.13) benign(0.029) TCGA-XF-A8HE-01 3 160148934 160148934 G C SMC4 Missense_Mutation p.E1019Q 0.07 tolerated(0.15) benign(0.159) TCGA-XF-A8HE-01 3 170184814 170184814 C G SLC7A14 3'UTR 0.10 TCGA-XF-A8HE-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-XF-A8HE-01 3 179294022 179294022 C G ACTL6A Missense_Mutation p.S165C 0.27 deleterious(0.01) probably_damaging(0.972) TCGA-XF-A8HE-01 3 179294425 179294425 C G ACTL6A Missense_Mutation p.L197V 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-XF-A8HE-01 3 179298707 179298707 C T ACTL6A Missense_Mutation p.H286Y 0.15 tolerated(0.34) possibly_damaging(0.904) TCGA-XF-A8HE-01 3 182733119 182733119 C G MCCC1 3'UTR 0.15 TCGA-XF-A8HE-01 3 183490134 183490134 G A YEATS2 Silent p.V663V 0.22 TCGA-XF-A8HE-01 3 183755937 183755937 C G HTR3D Missense_Mutation p.F263L 0.22 deleterious(0.03) possibly_damaging(0.836) TCGA-XF-A8HE-01 3 184019789 184019789 G A PSMD2 Missense_Mutation p.E212K 0.17 deleterious(0) probably_damaging(0.91) TCGA-XF-A8HE-01 3 185234886 185234886 G C LIPH Missense_Mutation p.F317L 0.14 deleterious(0) possibly_damaging(0.861) TCGA-XF-A8HE-01 3 186961291 186961291 C T MASP1 Silent p.K403K 0.19 TCGA-XF-A8HE-01 3 32180100 32180100 G A GPD1L Missense_Mutation p.E83K 0.13 tolerated(0.18) benign(0.383) TCGA-XF-A8HE-01 3 38081004 38081004 C T DLEC1 Silent p.L96L 0.25 TCGA-XF-A8HE-01 3 40557356 40557356 G A ZNF620 Missense_Mutation p.E91K 0.14 tolerated(0.44) benign(0) TCGA-XF-A8HE-01 3 42784430 42784430 C G CCDC13 Silent p.L315L 0.16 TCGA-XF-A8HE-01 3 5220360 5220360 C T ARL8B Nonsense_Mutation p.Q175* 0.20 TCGA-XF-A8HE-01 3 52412647 52412647 G A DNAH1 Missense_Mutation p.E2410K 0.19 benign(0.003) TCGA-XF-A8HE-01 3 52448053 52448053 C TT PHF7 Frame_Shift_Ins p.S28Ffs*39 0.10 TCGA-XF-A8HE-01 3 52668703 52668703 C T PBRM1 Missense_Mutation p.E406K 0.22 deleterious(0) benign(0.434) TCGA-XF-A8HE-01 3 52668805 52668805 C G PBRM1 Missense_Mutation p.E372Q 0.09 deleterious(0.01) possibly_damaging(0.607) TCGA-XF-A8HE-01 3 53804556 53804556 T C CACNA1D Missense_Mutation p.W1361R 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 3 93646099 93646099 C T PROS1 Missense_Mutation p.E77K 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 3 9412965 9412965 C G THUMPD3 Missense_Mutation p.I184M 0.21 tolerated_low_confidence(0.11) benign(0.2) TCGA-XF-A8HE-01 3 9739480 9739480 G A MTMR14 Missense_Mutation p.E567K 0.17 tolerated(0.24) benign(0.023) TCGA-XF-A8HE-01 3 9800937 9800937 G A OGG1 Intron 0.20 TCGA-XF-A8HE-01 4 108566146 108566146 G C PAPSS1 Missense_Mutation p.L440V 0.08 tolerated(0.09) benign(0.021) TCGA-XF-A8HE-01 4 122071303 122071303 G C TNIP3 Missense_Mutation p.F265L 0.25 tolerated(0.14) benign(0.034) TCGA-XF-A8HE-01 4 126370157 126370157 C A FAT4 Silent p.V2662V 0.22 TCGA-XF-A8HE-01 4 128726257 128726257 G C HSPA4L Missense_Mutation p.E339Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-XF-A8HE-01 4 128864912 128864912 C G MFSD8 Missense_Mutation p.G145A 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-XF-A8HE-01 4 13338798 13338798 G C HSP90AB2P RNA 0.12 TCGA-XF-A8HE-01 4 13338813 13338813 G C HSP90AB2P RNA 0.11 TCGA-XF-A8HE-01 4 13338852 13338852 G T HSP90AB2P RNA 0.09 TCGA-XF-A8HE-01 4 146072039 146072039 G A OTUD4 Silent p.L264L 0.17 TCGA-XF-A8HE-01 4 159076935 159076935 G A FAM198B Intron 0.23 TCGA-XF-A8HE-01 4 159133768 159133768 G A TMEM144 5'UTR 0.19 TCGA-XF-A8HE-01 4 159133814 159133814 G A TMEM144 5'UTR 0.18 TCGA-XF-A8HE-01 4 174253984 174253984 C T HMGB2 Silent p.E153E 0.11 TCGA-XF-A8HE-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.21 deleterious(0.01) possibly_damaging(0.594) TCGA-XF-A8HE-01 4 1805531 1805531 C T FGFR3 Intron 0.15 TCGA-XF-A8HE-01 4 184182301 184182301 G A WWC2 Missense_Mutation p.E509K 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-XF-A8HE-01 4 184236834 184236834 C T WWC2 Silent p.F1177F 0.16 TCGA-XF-A8HE-01 4 24543629 24543629 A T DHX15 Missense_Mutation p.I451N 0.14 deleterious(0.03) probably_damaging(0.981) TCGA-XF-A8HE-01 4 25806331 25806331 C G SEL1L3 Missense_Mutation p.K536N 0.11 tolerated(0.46) benign(0.001) TCGA-XF-A8HE-01 4 38799584 38799584 C G TLR1 Missense_Mutation p.R290T 0.13 tolerated(0.41) benign(0.021) TCGA-XF-A8HE-01 4 420768 420768 G A ABCA11P Intron 0.09 TCGA-XF-A8HE-01 4 48494839 48494839 G C ZAR1 Missense_Mutation p.E340D 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 4 48555389 48555389 G A FRYL Silent p.V1426V 0.09 TCGA-XF-A8HE-01 4 57179435 57179435 G C KIAA1211 Missense_Mutation p.D143H 0.03 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 4 6843886 6843886 G A KIAA0232 Missense_Mutation p.M108I 0.20 tolerated(0.08) possibly_damaging(0.45) TCGA-XF-A8HE-01 4 68693052 68693052 G C TMPRSS11D Silent p.L293L 0.13 TCGA-XF-A8HE-01 4 7055993 7055993 G T TADA2B Missense_Mutation p.A159S 0.21 tolerated(0.3) benign(0.007) TCGA-XF-A8HE-01 4 70596342 70596342 C T SULT1B1 Missense_Mutation p.E219K 0.08 tolerated(0.09) benign(0.007) TCGA-XF-A8HE-01 4 71508401 71508401 C G ENAM Missense_Mutation p.L420V 0.04 tolerated(0.39) benign(0.072) TCGA-XF-A8HE-01 5 101572628 101572628 T A SLCO4C1 Missense_Mutation p.K703N 0.27 tolerated(0.98) benign(0) TCGA-XF-A8HE-01 5 102895167 102895167 C T NUDT12 Missense_Mutation p.C70Y 0.14 deleterious(0) probably_damaging(0.979) TCGA-XF-A8HE-01 5 131607054 131607054 G C PDLIM4 Missense_Mutation p.E189Q 0.15 deleterious(0.01) benign(0.349) TCGA-XF-A8HE-01 5 137217765 137217765 G A MYOT Missense_Mutation p.E263K 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 5 137354117 137354117 C T FAM13B Missense_Mutation p.E82K 0.16 tolerated(0.07) possibly_damaging(0.559) TCGA-XF-A8HE-01 5 140764423 140764423 C T PCDHGA7 Missense_Mutation p.P653S 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.856) TCGA-XF-A8HE-01 5 145317698 145317698 C T SH3RF2 Silent p.L69L 0.14 TCGA-XF-A8HE-01 5 145969389 145969389 C G PPP2R2B 3'UTR 0.17 TCGA-XF-A8HE-01 5 147016608 147016608 G C JAKMIP2 Missense_Mutation p.Q512E 0.18 deleterious(0) benign(0.037) TCGA-XF-A8HE-01 5 149225358 149225358 C A PPARGC1B Missense_Mutation p.S951Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 5 149225374 149225374 C T PPARGC1B Silent p.L956L 0.18 TCGA-XF-A8HE-01 5 149225376 149225376 C T PPARGC1B Missense_Mutation p.S957F 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 5 150515820 150515820 G A ANXA6 Silent p.L162L 0.18 TCGA-XF-A8HE-01 5 156186296 156186296 G T SGCD Silent p.T256T 0.16 TCGA-XF-A8HE-01 5 157053261 157053261 G C SOX30 3'UTR 0.14 TCGA-XF-A8HE-01 5 158630512 158630512 G A RNF145 Silent p.I68I 0.21 TCGA-XF-A8HE-01 5 159835443 159835443 C G SLU7 Missense_Mutation p.E238Q 0.21 tolerated(0.13) probably_damaging(0.971) TCGA-XF-A8HE-01 5 176636760 176636760 G A NSD1 Missense_Mutation p.D454N 0.28 deleterious_low_confidence(0) benign(0.287) TCGA-XF-A8HE-01 5 176918073 176918073 C T PDLIM7 Missense_Mutation p.R158Q 0.31 deleterious(0.01) benign(0.062) TCGA-XF-A8HE-01 5 180048866 180048866 C T FLT4 Missense_Mutation p.E566K 0.14 tolerated(0.18) probably_damaging(0.955) TCGA-XF-A8HE-01 5 34863131 34863131 C G TTC23L Missense_Mutation p.L170V 0.14 tolerated(0.08) benign(0.309) TCGA-XF-A8HE-01 5 35072715 35072715 C T PRLR Missense_Mutation p.E169K 0.08 deleterious(0.03) probably_damaging(0.955) TCGA-XF-A8HE-01 5 35700647 35700647 T G SPEF2 Missense_Mutation p.L731V 0.18 tolerated(0.22) possibly_damaging(0.849) TCGA-XF-A8HE-01 5 37379655 37379655 C A WDR70 Missense_Mutation p.F30L 0.36 deleterious(0.03) benign(0.025) TCGA-XF-A8HE-01 5 41038954 41038954 C G MROH2B Missense_Mutation p.D700H 0.18 deleterious(0.02) probably_damaging(0.956) TCGA-XF-A8HE-01 5 54405998 54405998 G C GZMA Missense_Mutation p.K259N 0.13 tolerated(0.12) benign(0.213) TCGA-XF-A8HE-01 5 57754898 57754898 C G PLK2 Missense_Mutation p.E98Q 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A8HE-01 5 70838038 70838038 C G BDP1 Missense_Mutation p.Q2120E 0.10 deleterious(0.05) possibly_damaging(0.576) TCGA-XF-A8HE-01 5 79351615 79351615 C A THBS4 Silent p.L100L 0.22 TCGA-XF-A8HE-01 6 101296120 101296120 C T ASCC3 Silent p.L235L 0.15 TCGA-XF-A8HE-01 6 10586730 10586730 G A GCNT2 Intron 0.14 TCGA-XF-A8HE-01 6 10586744 10586744 G C GCNT2 Intron 0.13 TCGA-XF-A8HE-01 6 117128244 117128244 C G GPRC6A Missense_Mutation p.W208C 0.10 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 6 122744065 122744065 G A HSF2 Missense_Mutation p.D345N 0.20 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 6 129670474 129670474 G A LAMA2 Missense_Mutation p.D1490N 0.20 tolerated(0.57) benign(0.007) TCGA-XF-A8HE-01 6 130762006 130762006 C T TMEM200A Missense_Mutation p.L147F 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 6 137522104 137522104 G C IFNGR1 Missense_Mutation p.L259V 0.14 tolerated(0.33) benign(0.309) TCGA-XF-A8HE-01 6 145956510 145956510 C G EPM2A Missense_Mutation p.D197H 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 6 148869546 148869546 C T SASH1 Missense_Mutation p.S1199F 0.18 deleterious_low_confidence(0.03) benign(0.328) TCGA-XF-A8HE-01 6 170594483 170594483 G C DLL1 Silent p.P297P 0.17 TCGA-XF-A8HE-01 6 170700100 170700100 G A FAM120B Splice_Site p.X831_splice 0.24 TCGA-XF-A8HE-01 6 170866010 170866010 G A TBP 5'UTR 0.18 TCGA-XF-A8HE-01 6 25769292 25769292 G A SLC17A4 Silent p.L57L 0.29 TCGA-XF-A8HE-01 6 26031895 26031895 G C HIST1H3B Missense_Mutation p.R132G 0.12 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-XF-A8HE-01 6 26235027 26235027 G A HIST1H1D Silent p.I45I 0.18 TCGA-XF-A8HE-01 6 27114365 27114365 G C HIST1H2BK Missense_Mutation p.F71L 0.18 deleterious_low_confidence(0.02) benign(0.291) TCGA-XF-A8HE-01 6 27114996 27114996 G A HIST1H2AH Missense_Mutation p.R30Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-XF-A8HE-01 6 27834834 27834845 CTTCTTCGGAGT - HIST1H1B In_Frame_Del p.T155_K158del 0.10 TCGA-XF-A8HE-01 6 29974674 29974674 C T ZNRD1-AS1 Intron 0.33 TCGA-XF-A8HE-01 6 30577617 30577617 G C PPP1R10 Missense_Mutation p.F35L 0.21 tolerated(0.1) probably_damaging(0.931) TCGA-XF-A8HE-01 6 31732257 31732257 G C SAPCD1 Missense_Mutation p.E162D 0.11 deleterious(0.01) benign(0.347) TCGA-XF-A8HE-01 6 31938438 31938438 C T DXO Missense_Mutation p.E253K 0.25 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 6 33166104 33166104 G C RXRB Missense_Mutation p.I207M 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 6 33411047 33411047 C T SYNGAP1 Silent p.L906L 0.21 TCGA-XF-A8HE-01 6 37336285 37336285 G C RNF8 Missense_Mutation p.R89T 0.14 tolerated(0.13) possibly_damaging(0.764) TCGA-XF-A8HE-01 6 39282952 39282952 G A KCNK16 Missense_Mutation p.S306L 0.14 deleterious_low_confidence(0.01) benign(0) TCGA-XF-A8HE-01 6 43305549 43305549 C T ZNF318 Missense_Mutation p.E2063K 0.16 benign(0.033) TCGA-XF-A8HE-01 6 44122606 44122606 G A TMEM63B Missense_Mutation p.E829K 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-XF-A8HE-01 6 74150030 74150030 C T MB21D1 Missense_Mutation p.R339H 0.16 deleterious(0.01) benign(0.065) TCGA-XF-A8HE-01 6 84930781 84930781 C G KIAA1009 Missense_Mutation p.D56H 0.09 deleterious(0) possibly_damaging(0.889) TCGA-XF-A8HE-01 6 90383905 90383905 C T MDN1 Missense_Mutation p.E4389K 0.19 benign(0.085) TCGA-XF-A8HE-01 6 96999713 96999713 G A UFL1 Splice_Site p.X634_splice 0.08 TCGA-XF-A8HE-01 6 9897038 9897038 G A OFCC1 Intron 0.18 TCGA-XF-A8HE-01 7 100244385 100244385 C T ACTL6B Missense_Mutation p.D336N 0.12 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HE-01 7 100551882 100551882 C T MUC3A Silent p.F211F 0.08 TCGA-XF-A8HE-01 7 100806449 100806449 G A VGF Missense_Mutation p.S559L 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-XF-A8HE-01 7 104752875 104752875 C G KMT2E Missense_Mutation p.Q1558E 0.09 deleterious_low_confidence(0) benign(0.042) TCGA-XF-A8HE-01 7 111368673 111368673 G T DOCK4 Missense_Mutation p.S1853Y 0.11 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-XF-A8HE-01 7 122261582 122261582 C G CADPS2 Missense_Mutation p.E353Q 0.07 tolerated(0.06) possibly_damaging(0.756) TCGA-XF-A8HE-01 7 127231361 127231361 G T ARF5 3'UTR 0.13 TCGA-XF-A8HE-01 7 132937919 132937919 C A EXOC4 Nonsense_Mutation p.S21* 0.16 TCGA-XF-A8HE-01 7 135304605 135304605 G C NUP205 Missense_Mutation p.Q1433H 0.13 tolerated(0.08) benign(0.395) TCGA-XF-A8HE-01 7 137570238 137570238 G A CREB3L2 Nonsense_Mutation p.Q352* 0.12 TCGA-XF-A8HE-01 7 138453545 138453545 G A ATP6V0A4 Missense_Mutation p.R91W 0.38 deleterious(0.01) probably_damaging(1) TCGA-XF-A8HE-01 7 138968355 138968355 C G UBN2 Missense_Mutation p.Q902E 0.09 tolerated_low_confidence(0.06) benign(0.017) TCGA-XF-A8HE-01 7 138968545 138968545 C G UBN2 Missense_Mutation p.S965C 0.10 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-XF-A8HE-01 7 141955090 141955090 G C PRSS58 Missense_Mutation p.S74C 0.09 tolerated(0.2) possibly_damaging(0.738) TCGA-XF-A8HE-01 7 150936794 150936794 G A SMARCD3 Silent p.I404I 0.09 TCGA-XF-A8HE-01 7 151851141 151851141 G C KMT2C Nonsense_Mutation p.S4077* 0.38 TCGA-XF-A8HE-01 7 151856073 151856073 G A KMT2C Nonsense_Mutation p.Q3849* 0.13 TCGA-XF-A8HE-01 7 151927373 151927373 C T KMT2C Missense_Mutation p.D935N 0.12 benign(0.062) TCGA-XF-A8HE-01 7 157369315 157369315 C T PTPRN2 Missense_Mutation p.D925N 0.11 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 7 158109527 158109527 C G PTPRN2 Missense_Mutation p.Q87H 0.16 tolerated(0.07) possibly_damaging(0.841) TCGA-XF-A8HE-01 7 18687612 18687612 C G HDAC9 Missense_Mutation p.L414V 0.33 deleterious(0.04) possibly_damaging(0.835) TCGA-XF-A8HE-01 7 21469148 21469148 C G SP4 Missense_Mutation p.S122C 0.23 deleterious(0.01) benign(0.423) TCGA-XF-A8HE-01 7 24749890 24749890 G A DFNA5 Missense_Mutation p.A272V 0.22 tolerated(0.6) benign(0.002) TCGA-XF-A8HE-01 7 27149799 27149799 T G HOXA3 Missense_Mutation p.Q154P 0.15 deleterious(0) benign(0.153) TCGA-XF-A8HE-01 7 27149822 27149822 G C HOXA3 Silent p.L146L 0.17 TCGA-XF-A8HE-01 7 30921810 30921810 G A FAM188B Silent p.L662L 0.13 TCGA-XF-A8HE-01 7 42005483 42005483 G A GLI3 Missense_Mutation p.S1063F 0.12 deleterious(0) possibly_damaging(0.895) TCGA-XF-A8HE-01 7 45004062 45004062 C T MYO1G Silent p.Q861Q 0.11 TCGA-XF-A8HE-01 7 55990870 55990870 C T MRPS17 Nonsense_Mutation p.Q22* 0.16 TCGA-XF-A8HE-01 7 5756394 5756394 C A RNF216 Nonsense_Mutation p.E550* 0.22 TCGA-XF-A8HE-01 7 66103327 66103327 C T KCTD7 Missense_Mutation p.R78W 0.09 tolerated_low_confidence(0.13) benign(0) TCGA-XF-A8HE-01 7 73118654 73118654 G A STX1A Intron 0.43 TCGA-XF-A8HE-01 7 82583380 82583380 C G PCLO Missense_Mutation p.E2297Q 0.22 unknown(0) TCGA-XF-A8HE-01 7 92734759 92734759 C T SAMD9 Missense_Mutation p.E218K 0.15 deleterious(0) possibly_damaging(0.904) TCGA-XF-A8HE-01 7 99711688 99711688 C G TAF6 Missense_Mutation p.E86Q 0.19 tolerated(0.33) benign(0.285) TCGA-XF-A8HE-01 8 100974946 100974946 C T RGS22 Silent p.L1253L 0.07 TCGA-XF-A8HE-01 8 10583234 10583234 G A SOX7 3'UTR 0.12 TCGA-XF-A8HE-01 8 12040311 12040311 C T FAM86B1 3'UTR 0.14 TCGA-XF-A8HE-01 8 124157020 124157020 G C TBC1D31 Missense_Mutation p.D967H 0.32 deleterious(0.02) benign(0.062) TCGA-XF-A8HE-01 8 133900470 133900470 C T TG Silent p.I806I 0.16 TCGA-XF-A8HE-01 8 133900507 133900507 C G TG Missense_Mutation p.L819V 0.17 tolerated(0.64) benign(0.049) TCGA-XF-A8HE-01 8 133900576 133900576 C G TG Missense_Mutation p.L842V 0.16 deleterious(0.03) benign(0.004) TCGA-XF-A8HE-01 8 134478139 134478139 G A ST3GAL1 Silent p.L167L 0.17 TCGA-XF-A8HE-01 8 142483018 142483018 C T MROH5 3'UTR 0.38 TCGA-XF-A8HE-01 8 144940603 144940603 G A EPPK1 Silent p.I2273I 0.08 TCGA-XF-A8HE-01 8 145135510 145135510 C T EXOSC4 3'UTR 0.19 TCGA-XF-A8HE-01 8 145651089 145651089 G C VPS28 Missense_Mutation p.I57M 0.09 deleterious(0.02) possibly_damaging(0.804) TCGA-XF-A8HE-01 8 2046792 2046792 G A MYOM2 Missense_Mutation p.A807T 0.16 tolerated(0.11) benign(0.048) TCGA-XF-A8HE-01 8 23058245 23058245 C A TNFRSF10A Missense_Mutation p.D220Y 0.14 deleterious(0.05) possibly_damaging(0.89) TCGA-XF-A8HE-01 8 25718731 25718731 C G EBF2 Missense_Mutation p.L392F 0.17 tolerated(0.08) probably_damaging(0.924) TCGA-XF-A8HE-01 8 26505224 26505224 C T DPYSL2 Missense_Mutation p.R397W 0.22 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HE-01 8 26627600 26627600 G A ADRA1A Intron 0.15 TCGA-XF-A8HE-01 8 2830762 2830762 C A CSMD1 Missense_Mutation p.D2934Y 0.16 possibly_damaging(0.894) TCGA-XF-A8HE-01 8 38110591 38110591 G A DDHD2 Missense_Mutation p.E613K 0.19 tolerated(0.51) benign(0.217) TCGA-XF-A8HE-01 8 38874796 38874796 C T ADAM9 Missense_Mutation p.H157Y 0.22 deleterious(0.04) benign(0.217) TCGA-XF-A8HE-01 8 48353063 48353063 C T SPIDR Silent p.L352L 0.10 TCGA-XF-A8HE-01 8 48731990 48731990 C T PRKDC Missense_Mutation p.E3139K 0.16 possibly_damaging(0.757) TCGA-XF-A8HE-01 8 53569730 53569730 C G RB1CC1 Missense_Mutation p.E887Q 0.19 tolerated_low_confidence(0.14) probably_damaging(0.997) TCGA-XF-A8HE-01 8 67970374 67970374 C G COPS5 Missense_Mutation p.D151H 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 8 74209446 74209446 G A RDH10 Missense_Mutation p.E103K 0.18 tolerated(0.15) benign(0.26) TCGA-XF-A8HE-01 8 75276743 75276743 C A GDAP1 3'UTR 0.27 TCGA-XF-A8HE-01 8 82583256 82583256 C G IMPA1 Missense_Mutation p.E221Q 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A8HE-01 8 8875866 8875866 G A ERI1 Missense_Mutation p.M214I 0.17 deleterious(0.01) benign(0.311) TCGA-XF-A8HE-01 8 8875882 8875882 G C ERI1 Missense_Mutation p.G220R 0.16 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HE-01 9 100616436 100616436 C G FOXE1 Nonsense_Mutation p.Y80* 0.24 TCGA-XF-A8HE-01 9 100773666 100773666 G A ANP32B Missense_Mutation p.E211K 0.17 tolerated(0.75) unknown(0) TCGA-XF-A8HE-01 9 101992784 101992784 C G SEC61B 3'UTR 0.18 TCGA-XF-A8HE-01 9 106874078 106874078 C G SMC2 Missense_Mutation p.Q413E 0.23 tolerated(1) benign(0.004) TCGA-XF-A8HE-01 9 116018455 116018455 G T SLC31A1 Missense_Mutation p.M9I 0.14 tolerated(0.3) benign(0) TCGA-XF-A8HE-01 9 119097321 119097321 G A PAPPA Silent p.Q1193Q 0.20 TCGA-XF-A8HE-01 9 121930210 121930210 C T BRINP1 Missense_Mutation p.D480N 0.11 deleterious(0) benign(0.135) TCGA-XF-A8HE-01 9 127783044 127783044 C T SCAI Missense_Mutation p.E196K 0.21 deleterious(0.03) benign(0.206) TCGA-XF-A8HE-01 9 129154361 129154361 G A MVB12B Silent p.R142R 0.15 TCGA-XF-A8HE-01 9 129376822 129376822 G A LMX1B Missense_Mutation p.E32K 0.15 deleterious_low_confidence(0.02) benign(0.281) TCGA-XF-A8HE-01 9 135073895 135073895 G A NTNG2 Silent p.L252L 0.15 TCGA-XF-A8HE-01 9 138588462 138588462 G A SOHLH1 Silent p.F219F 0.19 TCGA-XF-A8HE-01 9 140330234 140330234 G A ENTPD8 Silent p.S366S 0.15 TCGA-XF-A8HE-01 9 19050377 19050377 G C RRAGA Silent p.L240L 0.23 TCGA-XF-A8HE-01 9 21227886 21227886 G A IFNA17 Missense_Mutation p.S96L 0.18 deleterious(0.02) probably_damaging(0.949) TCGA-XF-A8HE-01 9 32430447 32430447 G A ACO1 Missense_Mutation p.G534E 0.19 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 9 33026883 33026883 G C DNAJA1 Missense_Mutation p.E69Q 0.19 deleterious(0.03) benign(0.13) TCGA-XF-A8HE-01 9 33443859 33443859 A G AQP3 Missense_Mutation p.V47A 0.26 deleterious(0.01) benign(0.209) TCGA-XF-A8HE-01 9 33463916 33463916 G A NOL6 Silent p.I969I 0.16 TCGA-XF-A8HE-01 9 35295828 35295828 G A UNC13B Missense_Mutation p.R221Q 0.38 deleterious_low_confidence(0.03) benign(0) TCGA-XF-A8HE-01 9 5908726 5908726 G C MLANA 3'UTR 0.10 TCGA-XF-A8HE-01 X 118604382 118604382 G A SLC25A5 Missense_Mutation p.M215I 0.35 tolerated(0.19) benign(0.003) TCGA-XF-A8HE-01 X 12735943 12735943 G A FRMPD4 Missense_Mutation p.E1000K 0.41 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-XF-A8HE-01 X 21458841 21458841 C T CNKSR2 Missense_Mutation p.S154L 0.44 deleterious(0) benign(0.335) TCGA-XF-A8HE-01 X 43591984 43591984 C G MAOA Missense_Mutation p.P332A 0.25 tolerated(0.08) benign(0.068) TCGA-XF-A8HE-01 X 48382385 48382385 C T EBP Missense_Mutation p.H76Y 0.31 deleterious(0) probably_damaging(1) TCGA-XF-A8HE-01 X 77158143 77158143 G A COX7B Missense_Mutation p.R15Q 0.18 tolerated(0.49) benign(0.023) TCGA-XF-A8HE-01 X 88008976 88008976 C T CPXCR1 Silent p.F187F 0.26 TCGA-XF-A8HE-01 Y 24050314 24050314 C G RBMY1E Missense_Mutation p.R407T 0.14 deleterious(0) possibly_damaging(0.893) TCGA-XF-A8HF-01 10 105819473 105819473 G C COL17A1 Missense_Mutation p.S382C 0.73 unknown(0) TCGA-XF-A8HF-01 10 124594334 124594334 C A CUZD1 Missense_Mutation p.V424F 0.87 deleterious(0) probably_damaging(0.979) TCGA-XF-A8HF-01 10 23235172 23235172 T C ARMC3 Missense_Mutation p.Y50H 0.07 tolerated(0.14) probably_damaging(0.999) TCGA-XF-A8HF-01 10 59956367 59956367 C G IPMK Missense_Mutation p.E241Q 0.80 tolerated(0.09) benign(0.171) TCGA-XF-A8HF-01 10 61832825 61832825 T A ANK3 Missense_Mutation p.E2605V 0.42 probably_damaging(0.981) TCGA-XF-A8HF-01 10 61832826 61832826 C A ANK3 Nonsense_Mutation p.E2605* 0.42 TCGA-XF-A8HF-01 10 86007502 86007502 C T RGR Missense_Mutation p.R79C 0.80 tolerated(0.06) probably_damaging(0.968) TCGA-XF-A8HF-01 10 88452303 88452303 G T LDB3 Missense_Mutation p.D359Y 0.91 deleterious(0.01) possibly_damaging(0.886) TCGA-XF-A8HF-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.82 TCGA-XF-A8HF-01 11 108382238 108382238 G C EXPH5 Missense_Mutation p.F1332L 0.32 tolerated(1) benign(0) TCGA-XF-A8HF-01 11 117988659 117988659 G A TMPRSS4 3'UTR 0.30 TCGA-XF-A8HF-01 11 128851373 128851373 A T ARHGAP32 Missense_Mutation p.I559N 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 11 134238587 134238587 C A GLB1L2 Missense_Mutation p.N313K 0.08 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HF-01 11 55703622 55703622 G C OR5I1 Silent p.V85V 0.38 TCGA-XF-A8HF-01 11 67059158 67059158 T A ANKRD13D Missense_Mutation p.L161Q 0.11 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 11 67414285 67414285 A C ACY3 Missense_Mutation p.F77C 0.26 tolerated(0.17) possibly_damaging(0.854) TCGA-XF-A8HF-01 11 74562167 74562167 T A XRRA1 Missense_Mutation p.H441L 0.17 tolerated(0.27) benign(0.341) TCGA-XF-A8HF-01 11 75168764 75168764 C G GDPD5 Missense_Mutation p.A97P 0.08 tolerated(0.18) possibly_damaging(0.52) TCGA-XF-A8HF-01 12 105150894 105150894 C G CHST11 Silent p.P124P 0.17 TCGA-XF-A8HF-01 12 120139544 120139544 C A CIT Missense_Mutation p.K1809N 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-XF-A8HF-01 12 1702324 1702324 C - FBXL14 Frame_Shift_Del p.L304Wfs*47 0.33 TCGA-XF-A8HF-01 12 20858981 20858981 C G SLCO1C1 Missense_Mutation p.L124V 0.14 tolerated(0.05) benign(0.139) TCGA-XF-A8HF-01 12 22025589 22025589 T C ABCC9 Missense_Mutation p.Q723R 0.21 tolerated(0.12) benign(0.036) TCGA-XF-A8HF-01 12 22025590 22025590 G T ABCC9 Missense_Mutation p.Q723K 0.20 tolerated(0.21) benign(0.059) TCGA-XF-A8HF-01 12 29630166 29630166 C G OVCH1 Splice_Site p.X416_splice 0.21 TCGA-XF-A8HF-01 12 31231397 31231397 G A DDX11 Missense_Mutation p.E24K 0.19 tolerated(1) benign(0.001) TCGA-XF-A8HF-01 12 42631523 42631523 C T YAF2 Silent p.P10P 0.57 TCGA-XF-A8HF-01 12 57008933 57008933 G A BAZ2A Nonsense_Mutation p.Q201* 0.45 TCGA-XF-A8HF-01 12 57112490 57112490 G T NACA Intron 0.33 TCGA-XF-A8HF-01 12 69047930 69047930 T C RAP1B Silent p.N74N 0.52 TCGA-XF-A8HF-01 12 75601187 75601187 C G KCNC2 Missense_Mutation p.E193Q 0.42 tolerated(0.23) benign(0.079) TCGA-XF-A8HF-01 13 102220088 102220088 C A ITGBL1 Missense_Mutation p.Q119K 0.22 tolerated(0.51) benign(0) TCGA-XF-A8HF-01 13 33284189 33284189 A - PDS5B Frame_Shift_Del p.I691Ffs*65 0.29 TCGA-XF-A8HF-01 13 46543532 46543532 C T ZC3H13 Silent p.K1049K 0.32 TCGA-XF-A8HF-01 13 51969501 51969501 G C INTS6 Nonsense_Mutation p.S183* 0.15 TCGA-XF-A8HF-01 13 86368935 86368935 A G SLITRK6 Missense_Mutation p.V570A 0.05 deleterious(0.02) benign(0.031) TCGA-XF-A8HF-01 13 95092310 95092310 C A DCT Missense_Mutation p.G501C 0.17 deleterious(0.04) possibly_damaging(0.592) TCGA-XF-A8HF-01 13 96293797 96293797 G C DZIP1 Missense_Mutation p.L117V 0.19 deleterious(0.02) probably_damaging(0.95) TCGA-XF-A8HF-01 13 99064153 99064153 A G FARP1 Splice_Site p.X565_splice 0.58 TCGA-XF-A8HF-01 14 105409165 105409165 T G AHNAK2 Missense_Mutation p.K4208T 0.05 benign(0.236) TCGA-XF-A8HF-01 14 20916954 20916954 C G OSGEP Missense_Mutation p.E192Q 0.28 tolerated(0.21) benign(0.023) TCGA-XF-A8HF-01 14 21796735 21796735 G C RPGRIP1 Missense_Mutation p.K1016N 0.42 tolerated(0.09) probably_damaging(0.92) TCGA-XF-A8HF-01 14 21883102 21883102 C T CHD8 Silent p.K673K 0.53 TCGA-XF-A8HF-01 14 50360309 50360309 C T ARF6 5'UTR 0.60 TCGA-XF-A8HF-01 14 91780104 91780104 G T CCDC88C Missense_Mutation p.Q686K 0.17 tolerated(0.65) possibly_damaging(0.887) TCGA-XF-A8HF-01 15 102359306 102359306 C A OR4F15 Missense_Mutation p.A306E 0.36 deleterious_low_confidence(0.02) benign(0.016) TCGA-XF-A8HF-01 15 43628870 43628870 G A ADAL Missense_Mutation p.E81K 0.59 tolerated(0.12) probably_damaging(0.951) TCGA-XF-A8HF-01 15 59323524 59323524 C A RNF111 Missense_Mutation p.T168N 0.26 tolerated_low_confidence(0.18) benign(0.001) TCGA-XF-A8HF-01 15 69238498 69238498 G C SPESP1 Missense_Mutation p.E209Q 0.54 tolerated(0.13) possibly_damaging(0.827) TCGA-XF-A8HF-01 16 1553001 1553001 G C TELO2 Missense_Mutation p.D614H 0.16 deleterious(0) probably_damaging(0.964) TCGA-XF-A8HF-01 16 15690625 15690625 G A KIAA0430 Silent p.S1718S 0.10 TCGA-XF-A8HF-01 16 21270082 21270082 C G CRYM 3'UTR 0.33 TCGA-XF-A8HF-01 16 30078983 30078983 G A ALDOA Splice_Site p.X162_splice 0.33 TCGA-XF-A8HF-01 16 30393080 30393080 C G SEPT1 Splice_Site p.X107_splice 0.22 TCGA-XF-A8HF-01 16 30409441 30409441 C T ZNF48 Silent p.L290L 0.40 TCGA-XF-A8HF-01 16 54145873 54145873 C T FTO 3'UTR 0.54 TCGA-XF-A8HF-01 16 66946436 66946436 C T CDH16 Missense_Mutation p.D444N 0.45 tolerated(0.34) benign(0.163) TCGA-XF-A8HF-01 16 75642800 75642800 C T ADAT1 Missense_Mutation p.R377H 0.20 tolerated(0.07) probably_damaging(0.976) TCGA-XF-A8HF-01 16 89764670 89764670 G A SPATA2L Missense_Mutation p.S116L 0.25 deleterious(0.05) probably_damaging(0.973) TCGA-XF-A8HF-01 17 1538185 1538185 G A SCARF1 Missense_Mutation p.S787L 0.49 tolerated(0.18) benign(0.009) TCGA-XF-A8HF-01 17 34943609 34943609 A G GGNBP2 Silent p.A608A 0.16 TCGA-XF-A8HF-01 17 47490633 47490633 T C PHB 5'UTR 0.11 TCGA-XF-A8HF-01 17 48183252 48183252 C T PDK2 Silent p.F112F 0.35 TCGA-XF-A8HF-01 17 74010513 74010513 C T EVPL Silent p.A789A 0.09 TCGA-XF-A8HF-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.49 tolerated(0.1) benign(0.438) TCGA-XF-A8HF-01 17 9823024 9823024 T A GAS7 Splice_Site p.X380_splice 0.36 TCGA-XF-A8HF-01 18 2891371 2891371 A G EMILIN2 Missense_Mutation p.I416V 0.54 tolerated(0.31) probably_damaging(0.99) TCGA-XF-A8HF-01 18 50683800 50683800 C T DCC Missense_Mutation p.R446C 0.75 deleterious(0) probably_damaging(0.969) TCGA-XF-A8HF-01 18 8376142 8376142 G T PTPRM Silent p.V1090V 0.24 TCGA-XF-A8HF-01 19 14023365 14023365 G C CC2D1A Missense_Mutation p.E113Q 0.27 deleterious(0.02) possibly_damaging(0.582) TCGA-XF-A8HF-01 19 19989404 19989404 T C ZNF253 Silent p.L40L 0.24 TCGA-XF-A8HF-01 19 24102863 24102863 G A ZNF726 Missense_Mutation p.E69K 0.46 tolerated(0.14) benign(0.034) TCGA-XF-A8HF-01 19 37314700 37314700 A G ZNF790 Intron 0.25 TCGA-XF-A8HF-01 19 40739739 40739739 T G AKT2 3'UTR 0.30 TCGA-XF-A8HF-01 19 45540814 45540814 G T RELB Silent p.L502L 0.18 TCGA-XF-A8HF-01 19 46032398 46032398 G A OPA3 Silent p.R153R 0.18 TCGA-XF-A8HF-01 19 51628209 51628209 C A SIGLEC9 5'UTR 0.27 TCGA-XF-A8HF-01 19 53057262 53057262 C A ZNF808 Missense_Mutation p.H365N 0.34 deleterious(0) benign(0.358) TCGA-XF-A8HF-01 19 55439131 55439131 G A NLRP7 Silent p.C941C 0.13 TCGA-XF-A8HF-01 19 56320302 56320302 C A NLRP11 Silent p.V558V 0.37 TCGA-XF-A8HF-01 19 989822 989822 C T WDR18 Nonsense_Mutation p.Q128* 0.41 TCGA-XF-A8HF-01 1 101704729 101704729 C T S1PR1 Silent p.N63N 0.16 TCGA-XF-A8HF-01 1 109735320 109735320 T G KIAA1324 Missense_Mutation p.C591G 0.18 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 1 109814044 109814044 G C CELSR2 Silent p.L2571L 0.05 TCGA-XF-A8HF-01 1 151196720 151196720 G A PIP5K1A Splice_Site p.X29_splice 0.17 TCGA-XF-A8HF-01 1 151238534 151238534 C T PSMD4 Missense_Mutation p.R237W 0.34 deleterious(0.02) benign(0.012) TCGA-XF-A8HF-01 1 153509878 153509878 C A S100A5 Missense_Mutation p.S58I 0.23 deleterious(0) benign(0.089) TCGA-XF-A8HF-01 1 153932723 153932723 C G SLC39A1 Missense_Mutation p.E276Q 0.55 tolerated(0.1) benign(0.262) TCGA-XF-A8HF-01 1 153963272 153963272 C T RPS27 5'UTR 0.43 TCGA-XF-A8HF-01 1 154516497 154516497 C T TDRD10 Missense_Mutation p.L188F 0.32 tolerated(0.12) benign(0.14) TCGA-XF-A8HF-01 1 161029423 161029423 A G ARHGAP30 Missense_Mutation p.S61P 0.32 deleterious(0) possibly_damaging(0.892) TCGA-XF-A8HF-01 1 201031175 201031175 C A CACNA1S Nonsense_Mutation p.E984* 0.20 TCGA-XF-A8HF-01 1 201031179 201031179 C T CACNA1S Silent p.Q982Q 0.21 TCGA-XF-A8HF-01 1 201958062 201958062 G T RNPEP Nonsense_Mutation p.G160* 0.17 TCGA-XF-A8HF-01 1 201984362 201984362 G T ELF3 Nonsense_Mutation p.E343* 0.22 TCGA-XF-A8HF-01 1 226553747 226553747 C T PARP1 Missense_Mutation p.D805N 0.25 deleterious(0.01) possibly_damaging(0.906) TCGA-XF-A8HF-01 1 226555291 226555291 C T PARP1 Missense_Mutation p.D766N 0.33 deleterious(0.03) benign(0.324) TCGA-XF-A8HF-01 1 228479691 228479691 C G OBSCN Missense_Mutation p.P3907A 0.12 benign(0.224) TCGA-XF-A8HF-01 1 228582805 228582805 G A TRIM11 Silent p.R336R 0.27 TCGA-XF-A8HF-01 1 22922659 22922659 T C EPHA8 Silent p.N586N 0.30 TCGA-XF-A8HF-01 1 23724353 23724353 C T TCEA3 Missense_Mutation p.C180Y 0.09 tolerated(0.17) benign(0.396) TCGA-XF-A8HF-01 1 27269250 27269250 A - NUDC Frame_Shift_Del p.T177Pfs*13 0.35 TCGA-XF-A8HF-01 1 33794599 33794599 C T PHC2 Missense_Mutation p.G765D 0.25 deleterious(0.05) benign(0.01) TCGA-XF-A8HF-01 1 40029407 40029407 G T PABPC4 Missense_Mutation p.P516H 0.16 deleterious(0.04) benign(0.227) TCGA-XF-A8HF-01 1 42925521 42925521 A T PPCS Missense_Mutation p.K287I 0.17 tolerated(0.1) benign(0.189) TCGA-XF-A8HF-01 1 6266758 6266758 G A RNF207 Missense_Mutation p.D55N 0.47 deleterious(0.01) possibly_damaging(0.905) TCGA-XF-A8HF-01 1 94520767 94520767 C T ABCA4 Silent p.T829T 0.21 TCGA-XF-A8HF-01 20 13912253 13912253 A T SEL1L2 Missense_Mutation p.N93K 0.16 tolerated(0.13) benign(0.05) TCGA-XF-A8HF-01 20 21492719 21492719 C T NKX2-2 Missense_Mutation p.D222N 0.62 tolerated(0.1) possibly_damaging(0.795) TCGA-XF-A8HF-01 20 2290335 2290335 G A TGM3 Missense_Mutation p.A14T 0.20 tolerated(0.25) benign(0.004) TCGA-XF-A8HF-01 20 24939589 24939589 T C CST7 Missense_Mutation p.L90P 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 20 25459643 25459643 G T NINL Missense_Mutation p.P706H 0.13 tolerated(0.15) benign(0.428) TCGA-XF-A8HF-01 20 31424521 31424521 G A MAPRE1 Missense_Mutation p.A117T 0.68 deleterious(0.01) possibly_damaging(0.473) TCGA-XF-A8HF-01 20 33519778 33519778 G A GSS Silent p.L331L 0.27 TCGA-XF-A8HF-01 20 3766333 3766333 C T CENPB Silent p.K266K 0.11 TCGA-XF-A8HF-01 20 42161441 42161441 G C L3MBTL1 Missense_Mutation p.G416A 0.10 deleterious(0.04) possibly_damaging(0.815) TCGA-XF-A8HF-01 20 45017795 45017795 G T ELMO2 Missense_Mutation p.A103D 0.11 deleterious(0.01) benign(0.175) TCGA-XF-A8HF-01 20 45194969 45194969 C T SLC13A3 Missense_Mutation p.A465T 0.50 tolerated(0.39) benign(0.311) TCGA-XF-A8HF-01 20 46256410 46256410 C G NCOA3 Missense_Mutation p.A213G 0.10 tolerated(0.82) benign(0) TCGA-XF-A8HF-01 20 47768141 47768141 T A STAU1 Missense_Mutation p.E163V 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A8HF-01 20 50405669 50405669 G C SALL4 Missense_Mutation p.L825V 0.15 tolerated(0.2) benign(0.02) TCGA-XF-A8HF-01 20 55206687 55206687 G A TFAP2C Missense_Mutation p.A159T 0.26 tolerated(0.19) benign(0.059) TCGA-XF-A8HF-01 20 61391563 61391563 A C NTSR1 Missense_Mutation p.S401R 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HF-01 21 35199157 35199157 A G ITSN1 Silent p.G1073G 0.16 TCGA-XF-A8HF-01 21 47531459 47531459 G A COL6A2 Silent p.Q23Q 0.37 TCGA-XF-A8HF-01 22 21334336 21334336 C T AIFM3 Silent p.S560S 0.24 TCGA-XF-A8HF-01 22 29885168 29885168 G C NEFH Missense_Mutation p.E513D 0.31 deleterious(0) unknown(0) TCGA-XF-A8HF-01 22 30772571 30772571 G T CCDC157 Missense_Mutation p.R699L 0.10 tolerated_low_confidence(0.15) benign(0.098) TCGA-XF-A8HF-01 22 46722549 46722549 G A GTSE1 Missense_Mutation p.M574I 0.37 deleterious(0.05) benign(0.001) TCGA-XF-A8HF-01 2 128466271 128466271 G A WDR33 Missense_Mutation p.S1254F 0.21 deleterious_low_confidence(0.03) benign(0.137) TCGA-XF-A8HF-01 2 202025292 202025292 G A CFLAR Missense_Mutation p.V311I 0.20 tolerated(0.73) benign(0.162) TCGA-XF-A8HF-01 2 220146766 220146766 C G DNAJB2 Missense_Mutation p.P112R 0.50 deleterious(0) probably_damaging(0.996) TCGA-XF-A8HF-01 2 225642879 225642879 C T DOCK10 Silent p.V1926V 0.35 TCGA-XF-A8HF-01 2 232263118 232263118 T C B3GNT7 Missense_Mutation p.C230R 0.20 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 2 27303045 27303045 G T EMILIN1 Missense_Mutation p.R66L 0.16 probably_damaging(1) TCGA-XF-A8HF-01 2 27801391 27801391 C G C2orf16 Missense_Mutation p.P651R 0.17 deleterious(0) probably_damaging(0.988) TCGA-XF-A8HF-01 2 37076533 37076533 C G STRN 3'UTR 0.33 TCGA-XF-A8HF-01 2 72359706 72359706 G A CYP26B1 Missense_Mutation p.R397W 0.88 deleterious(0.01) probably_damaging(1) TCGA-XF-A8HF-01 2 98846601 98846601 C G VWA3B Missense_Mutation p.L747V 0.15 tolerated(0.5) benign(0.065) TCGA-XF-A8HF-01 3 113003370 113003370 C G BOC Missense_Mutation p.P948A 0.11 tolerated_low_confidence(0.29) benign(0.003) TCGA-XF-A8HF-01 3 122437765 122437765 G C PARP14 Missense_Mutation p.K1589N 0.21 tolerated(0.37) benign(0.001) TCGA-XF-A8HF-01 3 12421406 12421406 G C PPARG Missense_Mutation p.D96H 0.45 tolerated_low_confidence(0.13) possibly_damaging(0.796) TCGA-XF-A8HF-01 3 143691275 143691275 C T C3orf58 Missense_Mutation p.S34L 0.77 tolerated(0.27) benign(0.326) TCGA-XF-A8HF-01 3 151531949 151531949 C T AADAC 5'UTR 0.16 TCGA-XF-A8HF-01 3 153840155 153840155 C A ARHGEF26 Missense_Mutation p.P125Q 0.23 tolerated_low_confidence(0.13) benign(0.307) TCGA-XF-A8HF-01 3 29977648 29977648 A G RBMS3 Silent p.T337T 0.16 TCGA-XF-A8HF-01 3 31725547 31725547 G A OSBPL10 Silent p.F435F 0.35 TCGA-XF-A8HF-01 3 38012987 38012987 C G CTDSPL Silent p.A172A 0.10 TCGA-XF-A8HF-01 3 46580574 46580574 G C LRRC2 Missense_Mutation p.L151V 0.42 tolerated(0.06) possibly_damaging(0.801) TCGA-XF-A8HF-01 3 49737962 49737962 C T RNF123 Nonsense_Mutation p.R390* 0.10 TCGA-XF-A8HF-01 3 50386323 50386323 C G NPRL2 Missense_Mutation p.W189C 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 3 52850964 52850964 C T ITIH4 Missense_Mutation p.V803M 0.11 tolerated(0.06) possibly_damaging(0.612) TCGA-XF-A8HF-01 3 55504507 55504507 G A WNT5A Silent p.C252C 0.12 TCGA-XF-A8HF-01 3 65361496 65361496 G T MAGI1 Missense_Mutation p.N1040K 0.14 deleterious(0.01) probably_damaging(0.942) TCGA-XF-A8HF-01 3 99649664 99649664 G A FILIP1L Silent p.L67L 0.33 TCGA-XF-A8HF-01 4 100239244 100239244 A G ADH1B Missense_Mutation p.I73T 0.22 deleterious(0.01) possibly_damaging(0.772) TCGA-XF-A8HF-01 4 1107163 1107163 G C RNF212 Missense_Mutation p.C30W 0.43 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 4 149357438 149357438 G A NR3C2 Missense_Mutation p.P192L 0.16 tolerated_low_confidence(0.08) probably_damaging(0.913) TCGA-XF-A8HF-01 4 166006762 166006762 T C TMEM192 Missense_Mutation p.N218S 0.26 tolerated(0.74) benign(0.006) TCGA-XF-A8HF-01 4 184182168 184182168 C T WWC2 Silent p.L464L 0.32 TCGA-XF-A8HF-01 4 184182174 184182174 C T WWC2 Silent p.S466S 0.32 TCGA-XF-A8HF-01 4 184182448 184182448 C G WWC2 Missense_Mutation p.P558A 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HF-01 4 6325082 6325082 C T PPP2R2C Missense_Mutation p.A431T 0.06 tolerated(0.06) possibly_damaging(0.453) TCGA-XF-A8HF-01 4 7844886 7844886 T G AFAP1 Missense_Mutation p.I176L 0.22 deleterious(0.01) benign(0.21) TCGA-XF-A8HF-01 5 1213679 1213679 C A SLC6A19 Missense_Mutation p.F255L 0.60 tolerated(0.05) possibly_damaging(0.73) TCGA-XF-A8HF-01 5 131326550 131326550 G T ACSL6 Silent p.I127I 0.21 TCGA-XF-A8HF-01 5 139232579 139232579 C T NRG2 Silent p.R442R 0.33 TCGA-XF-A8HF-01 5 140236876 140236876 G A PCDHA10 Missense_Mutation p.E415K 0.67 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-XF-A8HF-01 5 150925119 150925119 G T FAT2 Missense_Mutation p.Q1857K 0.36 benign(0.001) TCGA-XF-A8HF-01 5 168149967 168149967 G C SLIT3 Silent p.T794T 0.33 TCGA-XF-A8HF-01 5 225560 225560 C A SDHA Missense_Mutation p.N113K 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-XF-A8HF-01 5 24537570 24537570 T G CDH10 Missense_Mutation p.K149Q 0.07 deleterious(0.01) probably_damaging(0.939) TCGA-XF-A8HF-01 5 24537572 24537572 A T CDH10 Missense_Mutation p.I148N 0.07 deleterious(0) probably_damaging(0.997) TCGA-XF-A8HF-01 5 70840879 70840879 G A BDP1 Missense_Mutation p.E2193K 0.77 deleterious(0.02) possibly_damaging(0.517) TCGA-XF-A8HF-01 5 72199584 72199584 G C TNPO1 Missense_Mutation p.D855H 0.53 tolerated(0.09) possibly_damaging(0.64) TCGA-XF-A8HF-01 6 131996422 131996422 T G ENPP3 Intron 0.23 TCGA-XF-A8HF-01 6 170151501 170151501 C A TCTE3 Missense_Mutation p.Q18H 0.35 tolerated_low_confidence(0.17) benign(0.001) TCGA-XF-A8HF-01 6 17779843 17779843 T G KIF13A Missense_Mutation p.I1307L 0.10 deleterious(0.05) benign(0.091) TCGA-XF-A8HF-01 6 27841146 27841146 G A HIST1H4L Missense_Mutation p.S48L 0.68 deleterious(0.01) possibly_damaging(0.849) TCGA-XF-A8HF-01 6 30656618 30656618 C G NRM Silent p.L203L 0.16 TCGA-XF-A8HF-01 6 31112774 31112774 C T CCHCR1 Silent p.L651L 0.16 TCGA-XF-A8HF-01 6 33263909 33263909 G A RGL2 Missense_Mutation p.L222F 0.35 tolerated(0.72) benign(0.007) TCGA-XF-A8HF-01 6 39895122 39895122 C A MOCS1 Missense_Mutation p.G66C 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HF-01 6 47682616 47682616 A C GPR115 Missense_Mutation p.R545S 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A8HF-01 6 73843150 73843150 G C KCNQ5 Missense_Mutation p.K437N 0.15 deleterious(0) benign(0.046) TCGA-XF-A8HF-01 6 85466494 85466494 C T TBX18 Silent p.S231S 0.16 TCGA-XF-A8HF-01 7 100685313 100685313 C A MUC17 Missense_Mutation p.T3539K 0.17 benign(0.001) TCGA-XF-A8HF-01 7 149983456 149983456 C T ACTR3C Silent p.E157E 0.17 TCGA-XF-A8HF-01 7 98543382 98543382 G C TRRAP Missense_Mutation p.E1496Q 0.22 benign(0.004) TCGA-XF-A8HF-01 8 100568678 100568678 G C VPS13B Missense_Mutation p.Q1607H 0.12 tolerated(0.21) probably_damaging(0.923) TCGA-XF-A8HF-01 8 13356662 13356662 G T DLC1 Missense_Mutation p.P307T 0.14 tolerated_low_confidence(0.11) benign(0.001) TCGA-XF-A8HF-01 8 134233073 134233073 C A WISP1 Missense_Mutation p.T200K 0.08 tolerated(0.09) benign(0.027) TCGA-XF-A8HF-01 8 144650369 144650369 C G MROH6 Missense_Mutation p.L569F 0.21 tolerated(0.08) benign(0.019) TCGA-XF-A8HF-01 8 33356007 33356007 G A MAK16 Missense_Mutation p.E255K 0.04 tolerated(0.34) benign(0.001) TCGA-XF-A8HF-01 9 112899415 112899415 G A PALM2-AKAP2 Missense_Mutation p.A531T 0.14 tolerated(0.48) benign(0.14) TCGA-XF-A8HF-01 9 116859 116859 G T FOXD4 Missense_Mutation p.P421T 0.15 tolerated_low_confidence(0.08) probably_damaging(0.994) TCGA-XF-A8HF-01 9 133952660 133952660 T C LAMC3 Missense_Mutation p.V1239A 0.34 tolerated(0.31) benign(0.018) TCGA-XF-A8HF-01 9 20882027 20882027 G A FOCAD Silent p.K825K 0.34 TCGA-XF-A8HF-01 9 86894890 86894890 C T SLC28A3 Missense_Mutation p.G610S 0.92 deleterious(0) probably_damaging(0.997) TCGA-XF-A8HF-01 X 102192579 102192579 G T RAB40AL Missense_Mutation p.K111N 0.65 tolerated(0.32) benign(0.207) TCGA-XF-A8HF-01 X 41003844 41003844 C G USP9X Missense_Mutation p.P462A 0.41 tolerated(0.4) benign(0.001) TCGA-XF-A8HG-01 10 103342528 103342528 C G POLL Missense_Mutation p.E396Q 0.36 tolerated(0.11) benign(0.285) TCGA-XF-A8HG-01 10 105005973 105005973 T A RPEL1 Missense_Mutation p.S74T 0.40 tolerated(0.31) benign(0.005) TCGA-XF-A8HG-01 10 105420858 105420858 C T SH3PXD2A Missense_Mutation p.A163T 0.14 deleterious(0.04) benign(0.016) TCGA-XF-A8HG-01 10 106907397 106907397 A T SORCS3 Missense_Mutation p.D442V 0.16 deleterious(0.02) benign(0.03) TCGA-XF-A8HG-01 10 115963151 115963151 C T TDRD1 Missense_Mutation p.T269M 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-XF-A8HG-01 10 119003681 119003681 G A SLC18A2 Silent p.V107V 0.16 TCGA-XF-A8HG-01 10 12292381 12292381 C T CDC123 3'UTR 0.33 TCGA-XF-A8HG-01 10 127409814 127409814 A G EDRF1 Silent p.R50R 0.23 TCGA-XF-A8HG-01 10 129910516 129910516 C G MKI67 Missense_Mutation p.G617A 0.38 tolerated(0.41) benign(0.1) TCGA-XF-A8HG-01 10 15175171 15175171 A G NMT2 Intron 0.21 TCGA-XF-A8HG-01 10 26559622 26559622 A C GAD2 Silent p.A343A 0.23 TCGA-XF-A8HG-01 10 34626354 34626354 G C PARD3 Missense_Mutation p.C806W 0.14 tolerated(0.08) possibly_damaging(0.682) TCGA-XF-A8HG-01 10 61414009 61414009 C T SLC16A9 Missense_Mutation p.V259M 0.21 tolerated(0.17) benign(0.01) TCGA-XF-A8HG-01 10 75408140 75408140 G C SYNPO2L Missense_Mutation p.R424G 0.38 deleterious(0.05) benign(0.307) TCGA-XF-A8HG-01 10 75671978 75671978 T C PLAU Missense_Mutation p.C31R 0.06 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 10 7763613 7763613 C T ITIH2 Missense_Mutation p.A247V 0.18 deleterious(0.05) benign(0.256) TCGA-XF-A8HG-01 10 91514406 91514406 T - KIF20B Frame_Shift_Del p.F1455Lfs*10 0.10 TCGA-XF-A8HG-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.60 TCGA-XF-A8HG-01 10 98816099 98816099 G A SLIT1 Missense_Mutation p.S427F 0.37 deleterious(0.01) possibly_damaging(0.882) TCGA-XF-A8HG-01 11 108172487 108172487 C A ATM Missense_Mutation p.L1764I 0.58 deleterious(0.02) benign(0.027) TCGA-XF-A8HG-01 11 111953192 111953192 T C C11orf57 Silent p.S126S 0.21 TCGA-XF-A8HG-01 11 116657244 116657244 C A ZNF259 Missense_Mutation p.D160Y 0.22 deleterious(0) probably_damaging(0.99) TCGA-XF-A8HG-01 11 128842510 128842510 A G ARHGAP32 Silent p.A1283A 0.27 TCGA-XF-A8HG-01 11 133790681 133790681 G A IGSF9B Missense_Mutation p.P980L 0.32 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-XF-A8HG-01 11 20907060 20907060 C G NELL1 Missense_Mutation p.R193G 0.40 deleterious(0) probably_damaging(0.987) TCGA-XF-A8HG-01 11 46680975 46680975 G A ATG13 Silent p.P243P 0.12 TCGA-XF-A8HG-01 11 46717643 46717643 T C ARHGAP1 Silent p.S5S 0.31 TCGA-XF-A8HG-01 11 48177408 48177408 C G PTPRJ Missense_Mutation p.I1095M 0.37 deleterious(0) probably_damaging(0.997) TCGA-XF-A8HG-01 11 5372956 5372956 G A OR51B6 Silent p.L73L 0.59 TCGA-XF-A8HG-01 11 5529957 5529957 A C UBQLN3 Missense_Mutation p.F278V 0.30 deleterious(0) possibly_damaging(0.619) TCGA-XF-A8HG-01 11 60777201 60777201 G A CD6 Silent p.E313E 0.64 TCGA-XF-A8HG-01 11 62520921 62520921 T C ZBTB3 Silent p.T122T 0.06 TCGA-XF-A8HG-01 11 64876946 64876946 T C VPS51 Silent p.T546T 0.30 TCGA-XF-A8HG-01 11 72946356 72946356 C A P2RY2 3'UTR 0.13 TCGA-XF-A8HG-01 11 86782610 86782610 C T TMEM135 Silent p.A105A 0.27 TCGA-XF-A8HG-01 11 92088328 92088328 G A FAT3 Missense_Mutation p.R1017Q 0.42 possibly_damaging(0.862) TCGA-XF-A8HG-01 11 94203763 94203763 A G MRE11A Silent p.H297H 0.24 TCGA-XF-A8HG-01 12 10954461 10954461 C T TAS2R7 Missense_Mutation p.V237I 0.21 tolerated(0.12) benign(0.42) TCGA-XF-A8HG-01 12 11090901 11090901 G C TAS2R14 Missense_Mutation p.F302L 0.54 tolerated(0.65) benign(0.002) TCGA-XF-A8HG-01 12 112843678 112843678 C G RPL6 Missense_Mutation p.E231D 0.16 tolerated(0.24) probably_damaging(0.968) TCGA-XF-A8HG-01 12 113759108 113759108 T C SLC8B1 Missense_Mutation p.I68V 0.10 tolerated(1) benign(0.003) TCGA-XF-A8HG-01 12 20792801 20792801 G A PDE3A Missense_Mutation p.D721N 0.52 deleterious(0) benign(0.253) TCGA-XF-A8HG-01 12 31944678 31944678 A - H3F3C 3'UTR 0.08 TCGA-XF-A8HG-01 12 32138194 32138194 G A KIAA1551 Silent p.A1435A 0.62 TCGA-XF-A8HG-01 12 42858700 42858700 C T PRICKLE1 Missense_Mutation p.S379N 0.26 tolerated(0.1) benign(0.002) TCGA-XF-A8HG-01 12 48866828 48866828 C T ANP32D Silent p.N127N 0.18 TCGA-XF-A8HG-01 12 52843256 52843256 T G KRT6B Silent p.T358T 0.05 TCGA-XF-A8HG-01 12 53010152 53010152 C T KRT73 Missense_Mutation p.E154K 0.36 deleterious(0) probably_damaging(0.984) TCGA-XF-A8HG-01 12 53189644 53189644 G A KRT3 Silent p.G61G 0.29 TCGA-XF-A8HG-01 12 58125149 58125149 G A AGAP2 Silent p.N715N 0.27 TCGA-XF-A8HG-01 12 58140464 58140464 C G TSPAN31 Silent p.L135L 0.53 TCGA-XF-A8HG-01 12 63974594 63974594 C T DPY19L2 Missense_Mutation p.R583K 0.25 tolerated(1) benign(0.009) TCGA-XF-A8HG-01 12 6981682 6981682 G C SPSB2 Missense_Mutation p.S128R 0.27 tolerated(0.39) benign(0.011) TCGA-XF-A8HG-01 12 72425559 72425559 C A TPH2 3'UTR 0.44 TCGA-XF-A8HG-01 12 76739816 76739816 C A BBS10 Missense_Mutation p.G650V 0.56 tolerated(0.07) benign(0.059) TCGA-XF-A8HG-01 13 31531121 31531121 C T TEX26 Nonsense_Mutation p.Q142* 0.37 TCGA-XF-A8HG-01 13 76111745 76111745 C T COMMD6 Intron 0.56 TCGA-XF-A8HG-01 13 78177226 78177239 TAATGCTACTGAAG - SCEL Frame_Shift_Del p.N352Kfs*6 0.37 TCGA-XF-A8HG-01 14 103342809 103342809 C T TRAF3 Missense_Mutation p.R173W 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 14 106110441 106110441 C G IGHG2 Splice_Site p.X99_splice 0.38 TCGA-XF-A8HG-01 14 21833045 21833045 T C SUPT16H Missense_Mutation p.K392E 0.08 tolerated(0.36) benign(0.023) TCGA-XF-A8HG-01 14 24546882 24546882 C T CPNE6 Silent p.I539I 0.39 TCGA-XF-A8HG-01 14 26939636 26939636 C T NOVA1 Intron 0.41 TCGA-XF-A8HG-01 14 38678666 38678666 C T SSTR1 Silent p.G24G 0.19 TCGA-XF-A8HG-01 14 52781581 52781581 G C PTGER2 Missense_Mutation p.E105D 0.40 tolerated(0.67) benign(0.001) TCGA-XF-A8HG-01 14 53138378 53138378 C T ERO1L Missense_Mutation p.D160N 0.37 deleterious(0.03) probably_damaging(1) TCGA-XF-A8HG-01 14 67826458 67826458 G A ATP6V1D 5'UTR 0.38 TCGA-XF-A8HG-01 14 74086283 74086283 C G ACOT6 Missense_Mutation p.Q122E 0.38 tolerated(0.88) benign(0.003) TCGA-XF-A8HG-01 14 75264673 75264673 G C YLPM1 Missense_Mutation p.K891N 0.38 probably_damaging(0.99) TCGA-XF-A8HG-01 14 75264796 75264796 G C YLPM1 Missense_Mutation p.E932D 0.56 benign(0.022) TCGA-XF-A8HG-01 14 76117738 76117738 C T C14orf1 3'UTR 0.33 TCGA-XF-A8HG-01 14 86089135 86089135 A C FLRT2 Missense_Mutation p.Q426P 0.20 tolerated(0.25) possibly_damaging(0.53) TCGA-XF-A8HG-01 14 88895782 88895782 G A SPATA7 Missense_Mutation p.D335N 0.42 tolerated(0.09) benign(0.008) TCGA-XF-A8HG-01 14 91365690 91365690 C T RPS6KA5 Missense_Mutation p.E486K 0.41 deleterious(0.01) possibly_damaging(0.794) TCGA-XF-A8HG-01 15 20488849 20488849 T C CHEK2P2 RNA 0.12 TCGA-XF-A8HG-01 15 23811532 23811532 G A MKRN3 Silent p.A201A 0.44 TCGA-XF-A8HG-01 15 34635343 34635343 C A NOP10 5'UTR 0.24 TCGA-XF-A8HG-01 15 41021755 41021755 T G RAD51 Missense_Mutation p.S234A 0.10 tolerated(0.12) benign(0.049) TCGA-XF-A8HG-01 15 50884783 50884783 G A TRPM7 Missense_Mutation p.R1217C 0.06 deleterious(0) probably_damaging(0.993) TCGA-XF-A8HG-01 15 51857297 51857297 A G DMXL2 Missense_Mutation p.W118R 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HG-01 15 52100712 52100712 C T TMOD2 3'UTR 0.31 TCGA-XF-A8HG-01 15 52258144 52258144 C T LEO1 Missense_Mutation p.E206K 0.27 tolerated_low_confidence(0.35) benign(0.007) TCGA-XF-A8HG-01 15 62205525 62205525 G T VPS13C Missense_Mutation p.N2845K 0.26 tolerated(1) benign(0.008) TCGA-XF-A8HG-01 15 78838008 78838008 A G PSMA4 Missense_Mutation p.I137V 0.34 tolerated(0.18) benign(0.017) TCGA-XF-A8HG-01 15 85327280 85327280 G C ZNF592 Silent p.S458S 0.26 TCGA-XF-A8HG-01 15 91172687 91172687 C T CRTC3 Missense_Mutation p.P397S 0.61 tolerated(0.11) probably_damaging(0.998) TCGA-XF-A8HG-01 15 99434727 99434727 G C IGF1R Missense_Mutation p.E272Q 0.35 tolerated(0.34) possibly_damaging(0.566) TCGA-XF-A8HG-01 15 99514368 99514368 A G PGPEP1L Missense_Mutation p.L14P 0.19 deleterious(0.03) possibly_damaging(0.822) TCGA-XF-A8HG-01 15 99901568 99901568 G T LRRC28 Missense_Mutation p.E241D 0.26 tolerated(0.38) benign(0.015) TCGA-XF-A8HG-01 16 23457164 23457164 T - COG7 Frame_Shift_Del p.K96Nfs*14 0.25 TCGA-XF-A8HG-01 16 24567175 24567175 A G RBBP6 Silent p.P157P 0.93 TCGA-XF-A8HG-01 16 3063943 3063943 C T CLDN9 Missense_Mutation p.R194C 0.91 tolerated(0.2) possibly_damaging(0.505) TCGA-XF-A8HG-01 16 55360277 55360277 A G IRX6 Silent p.T25T 0.30 TCGA-XF-A8HG-01 16 66977754 66977754 C T CES2 Silent p.G566G 0.27 TCGA-XF-A8HG-01 16 67003586 67003586 G A CES3 Nonsense_Mutation p.W356* 1.00 TCGA-XF-A8HG-01 16 78458885 78458885 C T WWOX Missense_Mutation p.L242F 0.09 deleterious(0.01) probably_damaging(0.912) TCGA-XF-A8HG-01 16 839588 839588 C T CHTF18 Missense_Mutation p.S160L 0.91 tolerated(0.56) benign(0.006) TCGA-XF-A8HG-01 17 10432103 10432103 C T MYH2 Silent p.L1216L 0.36 TCGA-XF-A8HG-01 17 15496796 15496796 C T CDRT1 Missense_Mutation p.V621M 0.05 deleterious(0.04) possibly_damaging(0.874) TCGA-XF-A8HG-01 17 32906041 32906041 G A C17orf102 Missense_Mutation p.P87S 0.10 tolerated_low_confidence(0.7) probably_damaging(0.932) TCGA-XF-A8HG-01 17 38031645 38031645 G - ZPBP2 Frame_Shift_Del p.G283Efs*28 0.21 TCGA-XF-A8HG-01 17 38938385 38938385 C A KRT27 Nonsense_Mutation p.E121* 0.22 TCGA-XF-A8HG-01 17 39551138 39551138 G C KRT31 Missense_Mutation p.I353M 0.25 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 17 39551180 39551180 G A KRT31 Silent p.Y339Y 0.19 TCGA-XF-A8HG-01 17 39675166 39675166 T C KRT15 5'UTR 0.71 TCGA-XF-A8HG-01 17 39784197 39784197 T C KRT17 5'Flank 0.25 TCGA-XF-A8HG-01 17 40174609 40174609 G A NKIRAS2 Missense_Mutation p.R96H 0.10 tolerated(0.54) probably_damaging(0.953) TCGA-XF-A8HG-01 17 40315779 40315779 G T KCNH4 Silent p.S774S 0.25 TCGA-XF-A8HG-01 17 40823553 40823553 G A PLEKHH3 Missense_Mutation p.S367L 0.17 deleterious(0) unknown(0) TCGA-XF-A8HG-01 17 42449741 42449741 C G ITGA2B Missense_Mutation p.E1037D 0.59 deleterious(0) benign(0.171) TCGA-XF-A8HG-01 17 42989065 42989065 C T GFAP Missense_Mutation p.C294Y 0.25 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 17 43555448 43555448 C T PLEKHM1 Silent p.T38T 0.22 TCGA-XF-A8HG-01 17 4534926 4534926 G A ALOX15 Missense_Mutation p.P653L 0.35 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 17 45917622 45917622 G A SCRN2 Silent p.N97N 0.10 TCGA-XF-A8HG-01 17 46133759 46133759 G A NFE2L1 Silent p.L174L 0.28 TCGA-XF-A8HG-01 17 4645782 4645782 C A ZMYND15 Silent p.T380T 0.43 TCGA-XF-A8HG-01 17 48434445 48434445 C T XYLT2 Silent p.S591S 0.12 TCGA-XF-A8HG-01 17 54672070 54672070 C T NOG Silent p.N162N 0.15 TCGA-XF-A8HG-01 17 54672122 54672122 A G NOG Missense_Mutation p.S180G 0.25 deleterious(0.04) benign(0.218) TCGA-XF-A8HG-01 17 57663568 57663568 A G DHX40 Silent p.Q466Q 0.14 TCGA-XF-A8HG-01 17 60799939 60799939 C T MARCH10 Silent p.V708V 0.13 TCGA-XF-A8HG-01 17 60837242 60837242 C G MARCH10 Missense_Mutation p.M112I 0.17 deleterious(0) benign(0.354) TCGA-XF-A8HG-01 17 61466822 61466822 G A TANC2 Missense_Mutation p.E916K 0.29 tolerated(0.05) possibly_damaging(0.826) TCGA-XF-A8HG-01 17 62026015 62026015 C G SCN4A Missense_Mutation p.E1034Q 0.11 deleterious(0.01) probably_damaging(0.92) TCGA-XF-A8HG-01 17 62271048 62271048 G A TEX2 Nonsense_Mutation p.R683* 0.29 TCGA-XF-A8HG-01 17 64059082 64059082 T - CEP112 Frame_Shift_Del p.K358Sfs*6 0.21 TCGA-XF-A8HG-01 17 79166193 79166193 C G AZI1 Splice_Site p.X850_splice 0.15 TCGA-XF-A8HG-01 17 79660922 79660922 C T HGS Missense_Mutation p.S288L 0.37 tolerated(0.72) benign(0.003) TCGA-XF-A8HG-01 17 80045374 80045374 G A FASN Missense_Mutation p.S1017L 0.10 tolerated(0.64) benign(0.002) TCGA-XF-A8HG-01 17 80332518 80332518 C T UTS2R Silent p.F106F 0.12 TCGA-XF-A8HG-01 18 25573577 25573577 T G CDH2 Missense_Mutation p.I349L 0.06 tolerated(0.12) benign(0.196) TCGA-XF-A8HG-01 18 2606462 2606462 G A NDC80 Missense_Mutation p.E505K 0.28 deleterious(0.01) benign(0.338) TCGA-XF-A8HG-01 18 28993167 28993167 A G DSG4 Missense_Mutation p.Y930C 0.04 deleterious(0.03) probably_damaging(0.99) TCGA-XF-A8HG-01 18 33689551 33689551 C A SLC39A6 3'UTR 0.04 TCGA-XF-A8HG-01 18 43705711 43705711 A G HAUS1 Missense_Mutation p.N247S 0.15 tolerated(0.45) benign(0.219) TCGA-XF-A8HG-01 18 44584639 44584639 G T KATNAL2 Missense_Mutation p.K50N 0.34 tolerated(0.17) benign(0.008) TCGA-XF-A8HG-01 18 46343742 46343742 A G CTIF Missense_Mutation p.R510G 0.21 deleterious(0.04) benign(0.038) TCGA-XF-A8HG-01 18 47438482 47438482 T C MYO5B Missense_Mutation p.N718D 0.22 tolerated(0.59) benign(0.102) TCGA-XF-A8HG-01 18 7008558 7008558 G C LAMA1 Missense_Mutation p.P1351A 0.21 tolerated(0.45) benign(0.004) TCGA-XF-A8HG-01 18 74635060 74635060 C G ZNF236 Nonsense_Mutation p.Y1195* 0.16 TCGA-XF-A8HG-01 18 77105558 77105558 G A ATP9B Missense_Mutation p.R868H 0.19 deleterious(0) probably_damaging(0.973) TCGA-XF-A8HG-01 19 1578449 1578449 G A MBD3 Missense_Mutation p.R256C 0.05 deleterious_low_confidence(0) benign(0.409) TCGA-XF-A8HG-01 19 16664487 16664487 A C SLC35E1 3'UTR 0.44 TCGA-XF-A8HG-01 19 20808217 20808217 G A ZNF626 Nonsense_Mutation p.Q156* 0.40 TCGA-XF-A8HG-01 19 21300024 21300024 C G ZNF714 Nonsense_Mutation p.S185* 0.30 TCGA-XF-A8HG-01 19 21950236 21950236 A G ZNF100 5'UTR 0.22 TCGA-XF-A8HG-01 19 21990895 21990895 T C ZNF43 Silent p.K648K 0.17 TCGA-XF-A8HG-01 19 23545103 23545103 A G ZNF91 Silent p.T226T 0.27 TCGA-XF-A8HG-01 19 23927511 23927511 G A ZNF681 Missense_Mutation p.P281S 0.46 deleterious(0.02) benign(0.003) TCGA-XF-A8HG-01 19 2732996 2732996 G A SLC39A3 Missense_Mutation p.A233V 0.29 tolerated(0.22) benign(0.438) TCGA-XF-A8HG-01 19 34941218 34941218 C T UBA2 Missense_Mutation p.R274W 0.06 deleterious(0.02) benign(0.004) TCGA-XF-A8HG-01 19 37903795 37903795 G C ZNF569 Missense_Mutation p.Q589E 0.34 tolerated(0.37) probably_damaging(0.975) TCGA-XF-A8HG-01 19 37903818 37903818 T G ZNF569 Missense_Mutation p.N581T 0.37 tolerated(0.14) benign(0.382) TCGA-XF-A8HG-01 19 39406165 39406165 A G SARS2 3'Flank 0.18 TCGA-XF-A8HG-01 19 39976405 39976405 C T TIMM50 Silent p.L253L 0.09 TCGA-XF-A8HG-01 19 40196501 40196501 C A LGALS14 5'UTR 0.24 TCGA-XF-A8HG-01 19 44160693 44160693 C T PLAUR Missense_Mutation p.C137Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HG-01 19 44739044 44739044 T G ZNF227 Missense_Mutation p.M154R 0.05 tolerated(0.53) benign(0) TCGA-XF-A8HG-01 19 46270333 46270333 G A SIX5 Missense_Mutation p.S295F 0.44 deleterious(0.01) benign(0.034) TCGA-XF-A8HG-01 19 47151799 47151799 C T DACT3 Silent p.A610A 0.17 TCGA-XF-A8HG-01 19 49637089 49637089 C T PPFIA3 Missense_Mutation p.R400W 0.49 deleterious(0) probably_damaging(0.976) TCGA-XF-A8HG-01 19 49954826 49954826 C T PIH1D1 Silent p.A2A 0.42 TCGA-XF-A8HG-01 19 50762487 50762487 C T MYH14 Silent p.F773F 0.56 TCGA-XF-A8HG-01 19 52869351 52869351 C T ZNF610 Silent p.V240V 0.39 TCGA-XF-A8HG-01 19 58153702 58153702 A G ZNF211 3'UTR 0.19 TCGA-XF-A8HG-01 19 58370424 58370424 G A ZNF587 Missense_Mutation p.G215E 0.25 tolerated(0.1) probably_damaging(0.931) TCGA-XF-A8HG-01 19 59025485 59025485 C T ZBTB45 Missense_Mutation p.C491Y 0.31 tolerated(0.07) benign(0.17) TCGA-XF-A8HG-01 19 6897481 6897481 C T EMR1 Missense_Mutation p.S146F 0.42 deleterious(0) probably_damaging(0.981) TCGA-XF-A8HG-01 19 8616632 8616632 C T MYO1F Missense_Mutation p.E255K 0.48 deleterious(0.01) possibly_damaging(0.783) TCGA-XF-A8HG-01 19 9064126 9064126 C A MUC16 Missense_Mutation p.G7774W 0.04 unknown(0) TCGA-XF-A8HG-01 19 917718 917718 G A KISS1R Silent p.P72P 0.56 TCGA-XF-A8HG-01 1 100178056 100178056 G T FRRS1 Missense_Mutation p.P447T 0.07 deleterious(0.02) possibly_damaging(0.868) TCGA-XF-A8HG-01 1 109822616 109822616 T C PSRC1 3'UTR 0.36 TCGA-XF-A8HG-01 1 110033976 110033976 C T ATXN7L2 Silent p.G597G 0.24 TCGA-XF-A8HG-01 1 111217098 111217098 C T KCNA3 Missense_Mutation p.G112R 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 1 114380235 114380235 A G PTPN22 Missense_Mutation p.L596S 0.23 tolerated(0.15) benign(0.049) TCGA-XF-A8HG-01 1 11861447 11861447 C T MTHFR Silent p.R82R 0.24 TCGA-XF-A8HG-01 1 151496831 151496831 G A CGN Silent p.L466L 0.21 TCGA-XF-A8HG-01 1 152760129 152760129 C T LCE1E Silent p.C118C 0.04 TCGA-XF-A8HG-01 1 152884006 152884006 T C IVL Missense_Mutation p.V578A 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-XF-A8HG-01 1 154931327 154931327 G A PYGO2 Silent p.L383L 0.33 TCGA-XF-A8HG-01 1 155722992 155722992 C T GON4L Intron 0.33 TCGA-XF-A8HG-01 1 155935104 155935104 G A ARHGEF2 Silent p.L190L 0.32 TCGA-XF-A8HG-01 1 160098515 160098515 C T ATP1A2 Missense_Mutation p.T364M 0.45 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 1 160970439 160970439 C T F11R Missense_Mutation p.V124I 0.34 tolerated(0.5) benign(0.028) TCGA-XF-A8HG-01 1 161298223 161298223 G T SDHC Nonsense_Mutation p.E39* 0.34 TCGA-XF-A8HG-01 1 167403313 167403313 C T CD247 Missense_Mutation p.E113K 0.36 tolerated(0.3) benign(0.122) TCGA-XF-A8HG-01 1 172560175 172560175 G C SUCO Silent p.V959V 0.52 TCGA-XF-A8HG-01 1 173915656 173915656 C T RC3H1 Silent p.L973L 0.53 TCGA-XF-A8HG-01 1 17603123 17603123 G A PADI3 Missense_Mutation p.E473K 0.32 deleterious(0) probably_damaging(0.954) TCGA-XF-A8HG-01 1 18152566 18152566 T C ACTL8 Missense_Mutation p.L218P 0.30 deleterious(0) probably_damaging(0.973) TCGA-XF-A8HG-01 1 181701776 181701776 C T CACNA1E Missense_Mutation p.R852C 0.25 deleterious(0.04) possibly_damaging(0.689) TCGA-XF-A8HG-01 1 186413089 186413089 G A PDC 3'UTR 0.35 TCGA-XF-A8HG-01 1 190129839 190129839 C T BRINP3 Silent p.K381K 0.17 TCGA-XF-A8HG-01 1 19490894 19490894 A G UBR4 Missense_Mutation p.L1518P 0.20 probably_damaging(0.997) TCGA-XF-A8HG-01 1 204401506 204401506 C T PIK3C2B Missense_Mutation p.S1326N 0.07 deleterious(0.03) possibly_damaging(0.882) TCGA-XF-A8HG-01 1 208213028 208213028 C T PLXNA2 Missense_Mutation p.E1480K 0.34 deleterious(0.02) probably_damaging(0.983) TCGA-XF-A8HG-01 1 209797052 209797052 C T LAMB3 Missense_Mutation p.S719N 0.28 tolerated(0.52) benign(0.001) TCGA-XF-A8HG-01 1 213009235 213009235 C G C1orf227 Missense_Mutation p.R86T 0.57 deleterious(0) benign(0.402) TCGA-XF-A8HG-01 1 220324972 220324972 T C RAB3GAP2 Silent p.T1334T 0.20 TCGA-XF-A8HG-01 1 220440054 220440054 A G RAB3GAP2 Intron 0.19 TCGA-XF-A8HG-01 1 22207920 22207920 A G HSPG2 Missense_Mutation p.L577P 0.34 benign(0.16) TCGA-XF-A8HG-01 1 231488506 231488506 C G SPRTN Nonsense_Mutation p.S290* 0.38 TCGA-XF-A8HG-01 1 24448080 24448080 C T IL22RA1 Missense_Mutation p.G314R 0.34 tolerated(0.15) benign(0.041) TCGA-XF-A8HG-01 1 246704248 246704248 G A TFB2M 3'UTR 0.38 TCGA-XF-A8HG-01 1 31418321 31418321 C A PUM1 Missense_Mutation p.V956F 0.56 deleterious(0) probably_damaging(0.936) TCGA-XF-A8HG-01 1 37282765 37282765 C T GRIK3 Missense_Mutation p.V663M 0.08 deleterious(0) probably_damaging(0.991) TCGA-XF-A8HG-01 1 39853179 39853179 A - MACF1 Frame_Shift_Del p.T2829Lfs*29 0.25 TCGA-XF-A8HG-01 1 39893173 39893173 G C MACF1 Missense_Mutation p.E3393Q 0.26 probably_damaging(0.999) TCGA-XF-A8HG-01 1 42045746 42045746 C G HIVEP3 Missense_Mutation p.E1575Q 0.24 benign(0.35) TCGA-XF-A8HG-01 1 42045831 42045831 C T HIVEP3 Silent p.L1546L 0.33 TCGA-XF-A8HG-01 1 42046303 42046303 C G HIVEP3 Missense_Mutation p.R1389T 0.31 possibly_damaging(0.827) TCGA-XF-A8HG-01 1 46745039 46745039 G A LRRC41 Intron 0.09 TCGA-XF-A8HG-01 1 46763259 46763259 C T LRRC41 Missense_Mutation p.M111I 0.24 tolerated(0.16) benign(0.031) TCGA-XF-A8HG-01 1 47767947 47767947 T - STIL Frame_Shift_Del p.N75Ifs*10 0.23 TCGA-XF-A8HG-01 1 67581040 67581040 G A C1orf141 Missense_Mutation p.S114L 0.46 tolerated(0.21) possibly_damaging(0.504) TCGA-XF-A8HG-01 1 85279622 85279622 G T LPAR3 Silent p.I323I 0.13 TCGA-XF-A8HG-01 1 85724315 85724315 C G C1orf52 Missense_Mutation p.D123H 0.33 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HG-01 1 900499 900499 G A KLHL17 Silent p.V619V 0.24 TCGA-XF-A8HG-01 20 14306717 14306717 A G FLRT3 Missense_Mutation p.M479T 0.23 deleterious(0) possibly_damaging(0.501) TCGA-XF-A8HG-01 20 23425424 23425424 C T CSTL1 Missense_Mutation p.S116F 0.25 tolerated(1) benign(0.014) TCGA-XF-A8HG-01 20 23431148 23431148 C T CST11 Missense_Mutation p.D138N 0.33 tolerated(0.3) benign(0.084) TCGA-XF-A8HG-01 20 23431167 23431167 C G CST11 Missense_Mutation p.L131F 0.40 deleterious(0.04) benign(0.046) TCGA-XF-A8HG-01 20 23856796 23856796 G A CST5 3'UTR 0.29 TCGA-XF-A8HG-01 20 23856856 23856856 G A CST5 Missense_Mutation p.S133F 0.35 deleterious(0.01) benign(0.264) TCGA-XF-A8HG-01 20 23856885 23856885 G A CST5 Silent p.I123I 0.30 TCGA-XF-A8HG-01 20 23858171 23858171 G A CST5 Missense_Mutation p.P106S 0.22 deleterious(0.02) benign(0.35) TCGA-XF-A8HG-01 20 23860140 23860140 G A CST5 Silent p.V58V 0.22 TCGA-XF-A8HG-01 20 23860323 23860323 G A CST5 5'UTR 0.22 TCGA-XF-A8HG-01 20 23860343 23860343 G A CST5 5'UTR 0.30 TCGA-XF-A8HG-01 20 30585061 30585061 G A XKR7 Missense_Mutation p.R514H 0.15 deleterious(0.05) benign(0.009) TCGA-XF-A8HG-01 20 31023195 31023195 A C ASXL1 Missense_Mutation p.S894R 0.69 tolerated_low_confidence(0.18) benign(0.319) TCGA-XF-A8HG-01 20 31023196 31023196 G T ASXL1 Missense_Mutation p.S894I 0.69 tolerated_low_confidence(0.11) possibly_damaging(0.572) TCGA-XF-A8HG-01 20 32295573 32295573 C T PXMP4 Missense_Mutation p.S193N 0.87 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HG-01 20 3251098 3251098 G C C20orf194 Missense_Mutation p.L921V 0.26 deleterious(0.02) possibly_damaging(0.742) TCGA-XF-A8HG-01 20 33162951 33162951 G A PIGU Missense_Mutation p.S384F 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HG-01 20 33163016 33163016 G A PIGU Silent p.I362I 0.18 TCGA-XF-A8HG-01 20 34220614 34220614 C A CPNE1 Missense_Mutation p.G50V 0.26 deleterious(0.01) benign(0.077) TCGA-XF-A8HG-01 20 34843591 34843591 G A AAR2 Missense_Mutation p.R360Q 0.20 tolerated(0.34) benign(0.009) TCGA-XF-A8HG-01 20 42199338 42199338 G C SGK2 Missense_Mutation p.G208R 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HG-01 20 43034742 43034742 C A HNF4A Missense_Mutation p.L54M 0.04 tolerated(0.24) possibly_damaging(0.611) TCGA-XF-A8HG-01 20 489205 489205 G A CSNK2A1 5'UTR 0.22 TCGA-XF-A8HG-01 20 5098165 5098165 C G PCNA Missense_Mutation p.G178A 0.22 tolerated(0.43) benign(0.015) TCGA-XF-A8HG-01 20 61526404 61526404 T C DIDO1 Silent p.R776R 0.19 TCGA-XF-A8HG-01 20 62196338 62196338 C T HELZ2 Silent p.P1279P 0.33 TCGA-XF-A8HG-01 21 30407258 30407258 T C USP16 Missense_Mutation p.V114A 0.08 tolerated(0.05) possibly_damaging(0.748) TCGA-XF-A8HG-01 21 37581127 37581127 C T DOPEY2 Silent p.F202F 0.44 TCGA-XF-A8HG-01 21 37626138 37626138 G C DOPEY2 Missense_Mutation p.Q1730H 0.54 tolerated(0.22) benign(0.004) TCGA-XF-A8HG-01 21 38884531 38884531 T G DYRK1A Silent p.T663T 0.27 TCGA-XF-A8HG-01 21 41032969 41032969 C T B3GALT5 Silent p.I161I 0.70 TCGA-XF-A8HG-01 21 45212603 45212603 G A RRP1 Silent p.T89T 0.32 TCGA-XF-A8HG-01 22 23956345 23956345 C T C22orf43 Missense_Mutation p.E200K 0.62 tolerated_low_confidence(0.24) benign(0.017) TCGA-XF-A8HG-01 22 31322825 31322825 C T MORC2 Missense_Mutation p.A960T 0.17 deleterious(0.04) benign(0.05) TCGA-XF-A8HG-01 22 37396012 37396012 A G TEX33 Missense_Mutation p.I168T 0.19 tolerated(0.05) benign(0.291) TCGA-XF-A8HG-01 22 42262990 42262990 G A SREBF2 Missense_Mutation p.G82R 0.32 tolerated(0.28) benign(0.016) TCGA-XF-A8HG-01 22 45736401 45736401 T C FAM118A 3'UTR 0.20 TCGA-XF-A8HG-01 22 46761222 46761222 G A CELSR1 Silent p.Y2820Y 0.15 TCGA-XF-A8HG-01 22 51065662 51065662 C T ARSA Missense_Mutation p.E133K 0.55 tolerated(0.07) benign(0.002) TCGA-XF-A8HG-01 2 100035398 100035398 G A REV1 Missense_Mutation p.L615F 0.60 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HG-01 2 128463936 128463936 C T WDR33 Silent p.P1324P 0.09 TCGA-XF-A8HG-01 2 170366655 170366655 G A KLHL41 Missense_Mutation p.V123I 0.04 deleterious(0) probably_damaging(0.987) TCGA-XF-A8HG-01 2 17836577 17836577 C G VSNL1 Missense_Mutation p.D164E 0.18 tolerated(0.07) possibly_damaging(0.749) TCGA-XF-A8HG-01 2 179398763 179398763 G T TTN Silent p.I34193I 0.55 TCGA-XF-A8HG-01 2 179465713 179465713 C A TTN Nonsense_Mutation p.E18640* 0.32 TCGA-XF-A8HG-01 2 220075812 220075812 G A ABCB6 Missense_Mutation p.R663W 0.29 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 2 220352944 220352944 C G SPEG Silent p.L2590L 0.71 TCGA-XF-A8HG-01 2 220353247 220353247 C T SPEG Missense_Mutation p.S2629L 0.86 probably_damaging(0.997) TCGA-XF-A8HG-01 2 238283397 238283397 C G COL6A3 Missense_Mutation p.E1113Q 0.82 possibly_damaging(0.762) TCGA-XF-A8HG-01 2 239234548 239234548 G A TRAF3IP1 Silent p.A97A 0.13 TCGA-XF-A8HG-01 2 45829161 45829161 G A SRBD1 Missense_Mutation p.P48S 0.67 tolerated_low_confidence(0.28) benign(0.001) TCGA-XF-A8HG-01 2 54045228 54045228 C G ERLEC1 3'UTR 0.82 TCGA-XF-A8HG-01 2 55529100 55529100 A G CCDC88A Missense_Mutation p.L1526S 0.15 tolerated(0.09) probably_damaging(0.913) TCGA-XF-A8HG-01 2 80772140 80772140 G A CTNNA2 Missense_Mutation p.E442K 0.22 tolerated(0.14) benign(0.035) TCGA-XF-A8HG-01 2 86258719 86258719 C T POLR1A Missense_Mutation p.E1438K 0.46 tolerated(0.53) benign(0.254) TCGA-XF-A8HG-01 2 86325841 86325841 T C POLR1A Missense_Mutation p.M109V 0.18 tolerated(0.16) benign(0.091) TCGA-XF-A8HG-01 2 95537468 95537468 C G TEKT4 Missense_Mutation p.C48W 0.17 tolerated(0.14) possibly_damaging(0.84) TCGA-XF-A8HG-01 3 10254914 10254914 G T IRAK2 Missense_Mutation p.K184N 0.13 deleterious(0.01) benign(0.258) TCGA-XF-A8HG-01 3 1189720 1189720 C T CNTN6 Silent p.L10L 0.28 TCGA-XF-A8HG-01 3 127323485 127323485 G A MCM2 Missense_Mutation p.E91K 0.41 deleterious(0.01) possibly_damaging(0.472) TCGA-XF-A8HG-01 3 128971755 128971755 G T COPG1 Nonsense_Mutation p.E94* 0.50 TCGA-XF-A8HG-01 3 128998630 128998630 G A HMCES Missense_Mutation p.A19T 0.12 tolerated(0.36) benign(0.036) TCGA-XF-A8HG-01 3 134276997 134276997 C T CEP63 Missense_Mutation p.S494L 0.32 deleterious(0.01) benign(0.018) TCGA-XF-A8HG-01 3 147109031 147109031 C G ZIC4 Missense_Mutation p.E281Q 0.39 deleterious(0.04) benign(0.142) TCGA-XF-A8HG-01 3 148744770 148744770 G C GYG1 3'UTR 0.54 TCGA-XF-A8HG-01 3 169557835 169557835 C G LRRC31 Missense_Mutation p.E532Q 0.63 tolerated(0.53) benign(0.018) TCGA-XF-A8HG-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.54 deleterious(0.04) probably_damaging(0.96) TCGA-XF-A8HG-01 3 195516979 195516979 G A MUC4 Missense_Mutation p.S491L 0.58 unknown(0) TCGA-XF-A8HG-01 3 20215864 20215864 T C SGOL1 Missense_Mutation p.K387E 0.04 deleterious(0.04) benign(0.181) TCGA-XF-A8HG-01 3 3097981 3097981 A C CNTN4 3'UTR 0.43 TCGA-XF-A8HG-01 3 32201097 32201097 A - GPD1L Frame_Shift_Del p.K298Sfs*102 0.18 TCGA-XF-A8HG-01 3 38153226 38153226 C A DLEC1 Silent p.R1168R 0.35 TCGA-XF-A8HG-01 3 44701352 44701352 G C ZNF35 Missense_Mutation p.E499D 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-XF-A8HG-01 3 48617031 48617031 G A COL7A1 Missense_Mutation p.P1742L 0.12 unknown(0) TCGA-XF-A8HG-01 3 48658960 48658962 GTG - TMEM89 In_Frame_Del p.T77del 0.19 TCGA-XF-A8HG-01 3 49148553 49148553 G C USP19 Silent p.V1123V 0.36 TCGA-XF-A8HG-01 3 49568722 49568722 T C DAG1 Missense_Mutation p.W260R 0.11 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 3 49694732 49694732 C T BSN Silent p.A2581A 0.05 TCGA-XF-A8HG-01 3 97983199 97983199 T C OR5H6 Missense_Mutation p.L24S 0.23 deleterious(0.04) benign(0.103) TCGA-XF-A8HG-01 4 101337108 101337108 G A EMCN Missense_Mutation p.S233F 0.27 deleterious(0) probably_damaging(0.99) TCGA-XF-A8HG-01 4 102751353 102751353 C A BANK1 Silent p.I153I 0.23 TCGA-XF-A8HG-01 4 10446851 10446851 C T ZNF518B Missense_Mutation p.E368K 0.25 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HG-01 4 114274800 114274800 G A ANK2 Missense_Mutation p.E1676K 0.46 benign(0.015) TCGA-XF-A8HG-01 4 119660372 119660372 C T SEC24D Missense_Mutation p.S770N 0.08 tolerated(0.1) probably_damaging(0.953) TCGA-XF-A8HG-01 4 123665129 123665129 T C BBS12 Silent p.H694H 0.21 TCGA-XF-A8HG-01 4 144354751 144354751 C A GAB1 Missense_Mutation p.P159T 0.18 deleterious(0.01) possibly_damaging(0.652) TCGA-XF-A8HG-01 4 146065525 146065525 G A OTUD4 Missense_Mutation p.S430L 0.30 tolerated(0.3) benign(0.167) TCGA-XF-A8HG-01 4 160260492 160260492 A G RAPGEF2 Missense_Mutation p.I679M 0.30 deleterious(0) probably_damaging(0.963) TCGA-XF-A8HG-01 4 170322937 170322937 C T NEK1 Missense_Mutation p.G1150D 0.51 tolerated(0.24) benign(0.004) TCGA-XF-A8HG-01 4 2733622 2733622 C T FAM193A 3'UTR 0.28 TCGA-XF-A8HG-01 4 69696470 69696470 A C UGT2B10 Missense_Mutation p.Y487S 0.31 deleterious(0) probably_damaging(0.978) TCGA-XF-A8HG-01 4 71464099 71464099 G A AMBN Silent p.Q54Q 0.28 TCGA-XF-A8HG-01 4 73185631 73185631 C T ADAMTS3 Silent p.L384L 0.58 TCGA-XF-A8HG-01 4 80327998 80327998 C T GK2 Missense_Mutation p.E453K 0.60 deleterious(0) possibly_damaging(0.905) TCGA-XF-A8HG-01 5 102353100 102353100 T C PAM Silent p.A798A 0.14 TCGA-XF-A8HG-01 5 121786876 121786876 T C SNCAIP Silent p.P778P 0.31 TCGA-XF-A8HG-01 5 127664453 127664453 G A FBN2 Missense_Mutation p.P1469L 0.05 deleterious(0.01) possibly_damaging(0.477) TCGA-XF-A8HG-01 5 134076961 134076961 C T CAMLG Silent p.V127V 0.25 TCGA-XF-A8HG-01 5 137499795 137499795 A C BRD8 Missense_Mutation p.I618S 0.21 tolerated(0.74) benign(0.04) TCGA-XF-A8HG-01 5 137802977 137802977 G A EGR1 Missense_Mutation p.R280H 0.14 tolerated(0.15) unknown(0) TCGA-XF-A8HG-01 5 139947381 139947381 C T SLC35A4 Silent p.L209L 0.33 TCGA-XF-A8HG-01 5 140188234 140188234 G A PCDHA4 Missense_Mutation p.A488T 0.22 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-XF-A8HG-01 5 140263480 140263480 C T PCDHA13 Missense_Mutation p.P543S 0.41 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-XF-A8HG-01 5 140563914 140563914 G A PCDHB16 Missense_Mutation p.G594S 0.10 tolerated_low_confidence(0.2) benign(0.037) TCGA-XF-A8HG-01 5 140735026 140735026 G A PCDHGA4 Missense_Mutation p.A87T 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-XF-A8HG-01 5 140744557 140744557 G T PCDHGA5 Silent p.P220P 0.09 TCGA-XF-A8HG-01 5 145508343 145508343 C G LARS Missense_Mutation p.K924N 0.53 tolerated(0.19) benign(0.009) TCGA-XF-A8HG-01 5 145850299 145850299 G A TCERG1 Silent p.K500K 0.48 TCGA-XF-A8HG-01 5 146780270 146780270 G C DPYSL3 Missense_Mutation p.I479M 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HG-01 5 150923274 150923274 T C FAT2 Missense_Mutation p.T2472A 0.44 probably_damaging(0.983) TCGA-XF-A8HG-01 5 16475020 16475021 - G FAM134B Frame_Shift_Ins p.I442Hfs*9 0.12 TCGA-XF-A8HG-01 5 169230120 169230120 G C DOCK2 Missense_Mutation p.Q871H 0.31 tolerated(0.09) benign(0.007) TCGA-XF-A8HG-01 5 169230148 169230148 G C DOCK2 Missense_Mutation p.E881Q 0.32 deleterious(0.03) possibly_damaging(0.675) TCGA-XF-A8HG-01 5 176323072 176323072 G A HK3 Missense_Mutation p.S30L 0.35 tolerated(0.37) benign(0.009) TCGA-XF-A8HG-01 5 52216234 52216234 G A ITGA1 Missense_Mutation p.R743K 0.25 tolerated(0.06) benign(0.159) TCGA-XF-A8HG-01 5 82837933 82837933 T C VCAN Silent p.I3037I 0.05 TCGA-XF-A8HG-01 6 114379009 114379009 G T HS3ST5 Silent p.I151I 0.55 TCGA-XF-A8HG-01 6 130762616 130762616 C T TMEM200A Missense_Mutation p.S350F 0.32 deleterious(0.02) possibly_damaging(0.451) TCGA-XF-A8HG-01 6 138583995 138583995 G T KIAA1244 Nonsense_Mutation p.E459* 0.71 TCGA-XF-A8HG-01 6 148869615 148869615 T C SASH1 Missense_Mutation p.I1222T 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A8HG-01 6 152332909 152332909 T C ESR1 Silent p.A405A 0.25 TCGA-XF-A8HG-01 6 152497596 152497596 C T SYNE1 Missense_Mutation p.E7854K 0.60 probably_damaging(0.988) TCGA-XF-A8HG-01 6 154732121 154732121 G A CNKSR3 Missense_Mutation p.S409L 0.24 tolerated(0.1) benign(0.326) TCGA-XF-A8HG-01 6 161021956 161021956 A - LPA Frame_Shift_Del p.F1040Lfs*5 0.28 TCGA-XF-A8HG-01 6 161990384 161990384 C T PARK2 Intron 0.16 TCGA-XF-A8HG-01 6 30676013 30676013 T C MDC1 Silent p.P781P 0.06 TCGA-XF-A8HG-01 6 31107612 31107612 C T PSORS1C1 Missense_Mutation p.S121L 0.57 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-XF-A8HG-01 6 31911221 31911221 C G CFB Missense_Mutation p.A342G 0.11 deleterious(0.01) benign(0.225) TCGA-XF-A8HG-01 6 32948215 32948215 A G BRD2 Missense_Mutation p.N783S 0.20 tolerated(0.08) benign(0.292) TCGA-XF-A8HG-01 6 33281064 33281064 G T TAPBP Silent p.L133L 0.57 TCGA-XF-A8HG-01 6 36651894 36651894 G - CDKN1A Frame_Shift_Del p.D7Mfs*24 0.19 TCGA-XF-A8HG-01 6 38816483 38816483 C G DNAH8 Nonsense_Mutation p.S1485* 0.31 TCGA-XF-A8HG-01 6 39893527 39893527 C T MOCS1 Missense_Mutation p.E105K 0.30 tolerated(0.22) benign(0.012) TCGA-XF-A8HG-01 6 42797588 42797588 C T GLTSCR1L Missense_Mutation p.P506L 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HG-01 6 43173955 43173955 G A CUL9 Silent p.K1668K 0.59 TCGA-XF-A8HG-01 6 44198389 44198389 G A SLC29A1 Missense_Mutation p.G225D 0.23 tolerated(0.14) benign(0.319) TCGA-XF-A8HG-01 6 51613415 51613415 A G PKHD1 Missense_Mutation p.L3000S 0.59 tolerated(0.43) benign(0.009) TCGA-XF-A8HG-01 6 74078467 74078467 G C OOEP 3'Flank 0.47 TCGA-XF-A8HG-01 6 97681758 97681758 C T MMS22L Nonsense_Mutation p.W427* 0.20 TCGA-XF-A8HG-01 7 100282401 100282401 G A GIGYF1 Silent p.L469L 0.45 TCGA-XF-A8HG-01 7 106522577 106522577 G C PIK3CG Missense_Mutation p.E852Q 0.36 deleterious(0.03) possibly_damaging(0.529) TCGA-XF-A8HG-01 7 107626467 107626467 T A LAMB1 Missense_Mutation p.N226Y 0.09 deleterious(0.02) probably_damaging(0.926) TCGA-XF-A8HG-01 7 11022758 11022758 T C PHF14 Missense_Mutation p.L291P 0.14 deleterious(0.02) possibly_damaging(0.855) TCGA-XF-A8HG-01 7 120979277 120979277 G T WNT16 Missense_Mutation p.G326C 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A8HG-01 7 121943350 121943350 A G FEZF1 Missense_Mutation p.Y273H 0.10 deleterious(0.03) possibly_damaging(0.483) TCGA-XF-A8HG-01 7 129066290 129066290 A G AHCYL2 Missense_Mutation p.Y572C 0.13 deleterious(0.04) probably_damaging(0.979) TCGA-XF-A8HG-01 7 134927537 134927537 A G STRA8 Missense_Mutation p.Q88R 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-XF-A8HG-01 7 143771878 143771878 C T OR2A25 Missense_Mutation p.A189V 0.13 tolerated(0.07) benign(0.034) TCGA-XF-A8HG-01 7 22165258 22165258 C G RAPGEF5 Missense_Mutation p.V681L 0.38 tolerated(0.16) benign(0.098) TCGA-XF-A8HG-01 7 23239813 23239813 G C NUPL2 Missense_Mutation p.D241H 0.42 tolerated(0.09) possibly_damaging(0.456) TCGA-XF-A8HG-01 7 36616162 36616178 AAATGGAAAGTTACGTA - AOAH Splice_Site p.X341_splice 0.26 TCGA-XF-A8HG-01 7 4050643 4050643 C A SDK1 Missense_Mutation p.T726K 0.20 tolerated(0.1) benign(0.051) TCGA-XF-A8HG-01 7 44924323 44924323 C A PURB Missense_Mutation p.G209W 0.56 deleterious(0.02) probably_damaging(0.943) TCGA-XF-A8HG-01 7 6193570 6193570 C T USP42 Silent p.A795A 0.15 TCGA-XF-A8HG-01 7 70163568 70163568 G T AUTS2 Missense_Mutation p.S235I 0.17 deleterious(0) benign(0.023) TCGA-XF-A8HG-01 7 74114565 74114565 C T GTF2I Intron 0.47 TCGA-XF-A8HG-01 7 75192564 75192564 C T HIP1 Silent p.L269L 0.40 TCGA-XF-A8HG-01 7 7676666 7676666 G A RPA3 Nonsense_Mutation p.Q111* 0.43 TCGA-XF-A8HG-01 7 98445697 98445697 G C TMEM130 Silent p.V430V 0.45 TCGA-XF-A8HG-01 7 99654593 99654593 G A ZSCAN21 5'UTR 0.42 TCGA-XF-A8HG-01 7 99773479 99773479 G C GPC2 Missense_Mutation p.L122V 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HG-01 8 110478902 110478902 G C PKHD1L1 Missense_Mutation p.V2837L 0.13 tolerated(0.16) benign(0.213) TCGA-XF-A8HG-01 8 114186029 114186029 C T CSMD3 Missense_Mutation p.D211N 0.09 deleterious(0.02) possibly_damaging(0.497) TCGA-XF-A8HG-01 8 125565468 125565468 G T MTSS1 Missense_Mutation p.P678Q 0.10 tolerated(0.41) benign(0.01) TCGA-XF-A8HG-01 8 145108187 145108187 C A OPLAH Missense_Mutation p.K932N 0.05 deleterious(0) probably_damaging(0.936) TCGA-XF-A8HG-01 8 145623179 145623179 G A CPSF1 Missense_Mutation p.P688L 0.09 tolerated(0.31) benign(0.012) TCGA-XF-A8HG-01 8 145999788 145999788 G A ZNF34 Silent p.L182L 0.36 TCGA-XF-A8HG-01 8 17924774 17924775 - A ASAH1 Frame_Shift_Ins p.E129* 0.21 TCGA-XF-A8HG-01 8 38003873 38003873 G C STAR Silent p.L133L 0.16 TCGA-XF-A8HG-01 8 48882563 48882563 G C MCM4 Missense_Mutation p.E460D 0.74 tolerated(0.45) benign(0.075) TCGA-XF-A8HG-01 8 53451027 53451027 C G FAM150A Silent p.V122V 0.68 TCGA-XF-A8HG-01 8 54142079 54142079 A G OPRK1 Silent p.A307A 0.08 TCGA-XF-A8HG-01 8 75233404 75233404 C T JPH1 Missense_Mutation p.G40D 0.10 deleterious(0) probably_damaging(0.983) TCGA-XF-A8HG-01 8 87126063 87126063 C T ATP6V0D2 Missense_Mutation p.R86W 0.13 deleterious(0) possibly_damaging(0.648) TCGA-XF-A8HG-01 8 87520834 87520834 G C RMDN1 Missense_Mutation p.R6G 0.20 tolerated_low_confidence(0.07) benign(0.004) TCGA-XF-A8HG-01 9 104238903 104238903 G T TMEM246 Missense_Mutation p.L158I 0.78 deleterious(0.01) possibly_damaging(0.59) TCGA-XF-A8HG-01 9 116356331 116356331 T C RGS3 Intron 0.07 TCGA-XF-A8HG-01 9 117844979 117844979 G A TNC Missense_Mutation p.R747W 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HG-01 9 124962329 124962329 A T MORN5 3'UTR 0.70 TCGA-XF-A8HG-01 9 132402823 132402823 C G ASB6 Missense_Mutation p.E98Q 0.48 tolerated(0.11) probably_damaging(0.998) TCGA-XF-A8HG-01 9 132402946 132402946 C T ASB6 Missense_Mutation p.E57K 0.38 deleterious(0.03) benign(0.287) TCGA-XF-A8HG-01 9 135462792 135462792 G A BARHL1 Silent p.A181A 0.25 TCGA-XF-A8HG-01 9 138376640 138376640 C T PPP1R26 Missense_Mutation p.A95V 0.14 tolerated(0.29) benign(0.008) TCGA-XF-A8HG-01 9 140242555 140242555 C A EXD3 Missense_Mutation p.G656C 0.19 deleterious(0.02) possibly_damaging(0.905) TCGA-XF-A8HG-01 9 19378471 19378471 G A RPS6 Missense_Mutation p.R131C 0.44 tolerated(0.18) benign(0.011) TCGA-XF-A8HG-01 9 339091 339091 C G DOCK8 Nonsense_Mutation p.S503* 0.32 TCGA-XF-A8HG-01 9 35700250 35700250 C T TLN1 Missense_Mutation p.D2200N 0.42 deleterious(0) probably_damaging(0.96) TCGA-XF-A8HG-01 9 79842380 79842380 T C VPS13A Silent p.V477V 0.05 TCGA-XF-A8HG-01 9 90262248 90262248 C T DAPK1 Missense_Mutation p.A420V 0.09 deleterious(0.02) benign(0.038) TCGA-XF-A8HG-01 9 95233016 95233016 C G ASPN Missense_Mutation p.D108H 0.33 tolerated(0.1) probably_damaging(0.981) TCGA-XF-A8HG-01 X 101912744 101912744 G A GPRASP1 Silent p.L1301L 0.46 TCGA-XF-A8HG-01 X 111874753 111874753 G A LHFPL1 Silent p.L186L 0.87 TCGA-XF-A8HG-01 X 140995780 140995780 T C MAGEC1 Silent p.L864L 0.48 TCGA-XF-A8HG-01 X 14883389 14883389 C T FANCB Missense_Mutation p.V82M 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-XF-A8HG-01 X 19026160 19026160 G A GPR64 Missense_Mutation p.H502Y 0.28 deleterious(0) benign(0.011) TCGA-XF-A8HG-01 X 21619431 21619431 G T CNKSR2 Nonsense_Mutation p.G670* 0.33 TCGA-XF-A8HG-01 X 30260644 30260644 C A MAGEB4 Missense_Mutation p.T131K 0.56 tolerated(0.12) benign(0.017) TCGA-XF-A8HG-01 X 53455019 53455019 G A RIBC1 Silent p.K62K 0.52 TCGA-XF-A8HG-01 X 70521950 70521950 T G ITGB1BP2 Intron 0.93 TCGA-XF-A8HG-01 X 70823634 70823634 C T ACRC Silent p.P169P 0.45 TCGA-XF-A8HG-01 X 99945573 99945573 G T SYTL4 Missense_Mutation p.S235Y 1.00 tolerated(0.13) benign(0.068) TCGA-XF-A8HH-01 10 12110991 12110991 C A DHTKD1 5'UTR 0.43 TCGA-XF-A8HH-01 10 24820855 24820855 C T KIAA1217 Missense_Mutation p.S1060L 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-XF-A8HH-01 10 58121011 58121011 G A ZWINT 5'UTR 0.27 TCGA-XF-A8HH-01 10 70405515 70405515 C G TET1 Nonsense_Mutation p.S1010* 0.22 TCGA-XF-A8HH-01 10 70406450 70406450 C T TET1 Nonsense_Mutation p.Q1322* 0.13 TCGA-XF-A8HH-01 10 93389663 93389663 C T PPP1R3C 3'UTR 0.19 TCGA-XF-A8HH-01 10 99416706 99416706 G T PI4K2A Silent p.V269V 0.23 TCGA-XF-A8HH-01 11 111753253 111753253 G C C11orf1 Silent p.L69L 0.34 TCGA-XF-A8HH-01 11 5067999 5067999 C T OR52J3 Missense_Mutation p.R82C 0.20 deleterious(0.01) benign(0.052) TCGA-XF-A8HH-01 11 57311169 57311169 C T SMTNL1 Missense_Mutation p.P287S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HH-01 11 58920671 58920671 G A FAM111A Silent p.E510E 0.23 TCGA-XF-A8HH-01 11 61539178 61539178 G A MYRF Missense_Mutation p.R316H 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-XF-A8HH-01 11 65623477 65623477 G A CFL1 Silent p.C80C 0.30 TCGA-XF-A8HH-01 11 68822696 68822696 C T TPCN2 Missense_Mutation p.P102L 0.26 deleterious(0) probably_damaging(1) TCGA-XF-A8HH-01 11 85346929 85346929 G C TMEM126B Intron 0.29 TCGA-XF-A8HH-01 11 95504794 95504794 G C FAM76B Silent p.L317L 0.30 TCGA-XF-A8HH-01 12 110318125 110318125 C T GLTP Missense_Mutation p.E19K 0.17 tolerated(0.28) benign(0.014) TCGA-XF-A8HH-01 12 12301926 12301926 C G LRP6 Silent p.L1052L 0.27 TCGA-XF-A8HH-01 12 123186580 123186580 C G HCAR2 3'UTR 0.42 TCGA-XF-A8HH-01 12 124821405 124821405 G A NCOR2 Silent p.H2003H 0.10 TCGA-XF-A8HH-01 12 29911635 29911635 A T TMTC1 Splice_Site p.X185_splice 0.13 TCGA-XF-A8HH-01 12 46230579 46230579 G A ARID2 Silent p.L276L 0.29 TCGA-XF-A8HH-01 12 46298726 46298726 G A ARID2 Silent p.K1791K 0.16 TCGA-XF-A8HH-01 12 46298733 46298733 G T ARID2 Nonsense_Mutation p.E1794* 0.17 TCGA-XF-A8HH-01 12 48723425 48723425 C T H1FNT Silent p.A117A 0.22 TCGA-XF-A8HH-01 12 56488228 56488228 C T ERBB3 Missense_Mutation p.P583S 0.15 deleterious(0.03) probably_damaging(0.917) TCGA-XF-A8HH-01 12 56737115 56737115 C T STAT2 3'UTR 0.32 TCGA-XF-A8HH-01 12 6030527 6030527 G C ANO2 Missense_Mutation p.I67M 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-XF-A8HH-01 12 63195765 63195765 G C PPM1H Missense_Mutation p.P196R 0.18 tolerated(0.23) benign(0.312) TCGA-XF-A8HH-01 13 21265282 21265282 G T IFT88 Nonsense_Mutation p.E824* 0.27 TCGA-XF-A8HH-01 13 25274889 25274889 C T ATP12A Silent p.F576F 0.38 TCGA-XF-A8HH-01 13 78335205 78335205 A G SLAIN1 Missense_Mutation p.S389G 0.38 tolerated(0.28) benign(0.139) TCGA-XF-A8HH-01 14 102931587 102931587 C T TECPR2 Silent p.L1250L 0.24 TCGA-XF-A8HH-01 14 105413205 105413205 G A AHNAK2 Silent p.I2861I 0.10 TCGA-XF-A8HH-01 14 21991188 21991188 C G SALL2 Missense_Mutation p.E892Q 0.08 tolerated(0.14) probably_damaging(0.993) TCGA-XF-A8HH-01 14 22465850 22465850 A G TRAV17 5'UTR 0.30 TCGA-XF-A8HH-01 14 24614967 24614967 G C PSME2 Silent p.L32L 0.41 TCGA-XF-A8HH-01 14 34268993 34268993 G A NPAS3 Missense_Mutation p.E494K 0.30 tolerated(0.13) benign(0.221) TCGA-XF-A8HH-01 14 35062350 35062350 C G SNX6 Missense_Mutation p.D219H 0.30 deleterious(0) possibly_damaging(0.694) TCGA-XF-A8HH-01 14 68157903 68157903 C T RDH11 Silent p.S136S 0.32 TCGA-XF-A8HH-01 15 31360178 31360178 C G TRPM1 Missense_Mutation p.E150Q 0.26 tolerated(0.1) benign(0.068) TCGA-XF-A8HH-01 15 40594234 40594234 C T PLCB2 Splice_Site p.X169_splice 0.24 TCGA-XF-A8HH-01 15 45442897 45442897 C G DUOX1 Missense_Mutation p.I962M 0.36 tolerated(0.27) benign(0.007) TCGA-XF-A8HH-01 15 45814199 45814199 G C SLC30A4 Silent p.A118A 0.36 TCGA-XF-A8HH-01 15 50902041 50902041 C T TRPM7 Missense_Mutation p.E800K 0.22 tolerated(0.22) possibly_damaging(0.614) TCGA-XF-A8HH-01 15 53908364 53908364 T A WDR72 Missense_Mutation p.H680L 0.21 deleterious(0) possibly_damaging(0.842) TCGA-XF-A8HH-01 15 60741060 60741060 C G NARG2 Missense_Mutation p.Q702H 0.11 tolerated(0.09) benign(0.014) TCGA-XF-A8HH-01 15 60741548 60741548 C T NARG2 Missense_Mutation p.E540K 0.24 tolerated(0.5) benign(0.007) TCGA-XF-A8HH-01 15 60741617 60741617 C G NARG2 Missense_Mutation p.E517Q 0.26 tolerated(0.49) benign(0.282) TCGA-XF-A8HH-01 15 64706352 64706352 C A TRIP4 Missense_Mutation p.S371Y 0.15 deleterious(0.03) benign(0.005) TCGA-XF-A8HH-01 15 75580601 75580601 G C GOLGA6D Missense_Mutation p.E154Q 0.32 deleterious(0.02) possibly_damaging(0.859) TCGA-XF-A8HH-01 15 79224774 79224774 G A CTSH Silent p.F144F 0.17 TCGA-XF-A8HH-01 16 10837823 10837823 C T NUBP1 Missense_Mutation p.P9S 0.38 deleterious(0) probably_damaging(0.992) TCGA-XF-A8HH-01 16 22314264 22314264 G C POLR3E 5'UTR 0.26 TCGA-XF-A8HH-01 16 23400193 23400193 C T COG7 3'UTR 0.14 TCGA-XF-A8HH-01 16 67327899 67327899 G A KCTD19 Missense_Mutation p.S589L 0.25 tolerated(0.09) benign(0.055) TCGA-XF-A8HH-01 16 67327997 67327997 G C KCTD19 Silent p.V556V 0.29 TCGA-XF-A8HH-01 17 14205045 14205045 C T HS3ST3B1 Silent p.A70A 0.50 TCGA-XF-A8HH-01 17 27414050 27414050 C T MYO18A Silent p.Q1872Q 0.12 TCGA-XF-A8HH-01 17 33288602 33288602 C T ZNF830 Missense_Mutation p.S6F 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-XF-A8HH-01 17 40179718 40179718 C T ZNF385C Missense_Mutation p.R399H 0.18 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HH-01 17 42168789 42168789 C T HDAC5 Silent p.T413T 0.08 TCGA-XF-A8HH-01 17 47895248 47895248 C T KAT7 Missense_Mutation p.R344C 0.30 deleterious(0.04) benign(0.064) TCGA-XF-A8HH-01 17 48551110 48551110 C G ACSF2 Missense_Mutation p.I520M 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A8HH-01 17 56386652 56386652 C T BZRAP1 Silent p.K1327K 0.12 TCGA-XF-A8HH-01 17 58134520 58134520 G T HEATR6 Silent p.L656L 0.35 TCGA-XF-A8HH-01 17 62758676 62758676 C G hsa-mir-6080 RNA 0.09 TCGA-XF-A8HH-01 17 62758790 62758790 C T hsa-mir-6080 RNA 0.13 TCGA-XF-A8HH-01 17 67282434 67282434 G A ABCA5 Missense_Mutation p.S687L 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A8HH-01 17 72942938 72942938 G T OTOP3 Missense_Mutation p.A330S 0.37 tolerated(0.71) benign(0.012) TCGA-XF-A8HH-01 17 74273247 74273247 C T QRICH2 Missense_Mutation p.M1588I 0.37 tolerated(0.07) benign(0.086) TCGA-XF-A8HH-01 17 7579415 7579415 C T TP53 Nonsense_Mutation p.W91* 0.41 TCGA-XF-A8HH-01 18 2578109 2578109 G A NDC80 Missense_Mutation p.E149K 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A8HH-01 18 74672699 74672699 G A ZNF236 Silent p.V1767V 0.11 TCGA-XF-A8HH-01 18 77246360 77246360 G A NFATC1 Silent p.A722A 0.31 TCGA-XF-A8HH-01 19 20844362 20844362 G A ZNF626 5'UTR 0.30 TCGA-XF-A8HH-01 19 21720515 21720515 C T ZNF429 Nonsense_Mutation p.Q554* 0.17 TCGA-XF-A8HH-01 19 32845418 32845418 A G ZNF507 Missense_Mutation p.N561S 0.08 tolerated(0.5) benign(0.002) TCGA-XF-A8HH-01 19 43087450 43087450 C G CEACAM8 Missense_Mutation p.R333T 0.23 tolerated(0.19) benign(0.001) TCGA-XF-A8HH-01 19 47548576 47548576 C T NPAS1 Silent p.D480D 0.18 TCGA-XF-A8HH-01 19 53343935 53343935 G A ZNF468 3'UTR 0.17 TCGA-XF-A8HH-01 19 56407431 56407431 G C NLRP13 Silent p.L1004L 0.32 TCGA-XF-A8HH-01 1 118455250 118455250 G A GDAP2 Silent p.F124F 0.25 TCGA-XF-A8HH-01 1 154947364 154947364 G A CKS1B Intron 0.23 TCGA-XF-A8HH-01 1 161143713 161143713 G A B4GALT3 Silent p.L206L 0.25 TCGA-XF-A8HH-01 1 16914285 16914285 G A NBPF1 Silent p.D167D 0.05 TCGA-XF-A8HH-01 1 200877971 200877971 G A C1orf106 Missense_Mutation p.E230K 0.25 deleterious(0.03) possibly_damaging(0.662) TCGA-XF-A8HH-01 1 206760303 206760303 C A RASSF5 Missense_Mutation p.P417H 0.14 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-XF-A8HH-01 1 207104857 207104857 G C PIGR Silent p.P728P 0.37 TCGA-XF-A8HH-01 1 214826219 214826219 G C CENPF Missense_Mutation p.E2737Q 0.24 possibly_damaging(0.677) TCGA-XF-A8HH-01 1 226570804 226570804 G A PARP1 Silent p.S364S 0.18 TCGA-XF-A8HH-01 1 228462037 228462037 G A OBSCN Missense_Mutation p.E2234K 0.35 benign(0.343) TCGA-XF-A8HH-01 1 3624130 3624130 G A TP73 Silent p.L68L 0.23 TCGA-XF-A8HH-01 1 36397036 36397036 C T AGO3 Silent p.I3I 0.36 TCGA-XF-A8HH-01 1 39847678 39847678 G C MACF1 Missense_Mutation p.E2506Q 0.28 probably_damaging(0.999) TCGA-XF-A8HH-01 1 43232181 43232181 G T LEPRE1 Missense_Mutation p.F154L 0.27 tolerated(0.07) possibly_damaging(0.57) TCGA-XF-A8HH-01 1 44595607 44595607 A G KLF17 Missense_Mutation p.M222V 0.16 tolerated(0.07) benign(0.026) TCGA-XF-A8HH-01 1 76378435 76378435 G T MSH4 Missense_Mutation p.A892S 0.25 deleterious(0.04) benign(0.411) TCGA-XF-A8HH-01 20 35176535 35176535 C T MYL9 Silent p.N95N 0.07 TCGA-XF-A8HH-01 20 3678470 3678470 G T SIGLEC1 Silent p.S699S 0.39 TCGA-XF-A8HH-01 20 419427 419427 T G TBC1D20 Missense_Mutation p.M339L 0.31 tolerated(0.72) benign(0.007) TCGA-XF-A8HH-01 22 25010755 25010755 G A GGT1 Silent p.R59R 0.24 TCGA-XF-A8HH-01 22 38917725 38917725 G C DMC1 Missense_Mutation p.Q281E 0.26 tolerated(0.21) benign(0.257) TCGA-XF-A8HH-01 2 106713228 106713228 C A UXS1 Missense_Mutation p.Q364H 0.25 tolerated(0.19) benign(0.012) TCGA-XF-A8HH-01 2 201435997 201435997 G C SGOL2 Missense_Mutation p.E310Q 0.33 deleterious(0.03) possibly_damaging(0.756) TCGA-XF-A8HH-01 2 201436313 201436313 G T SGOL2 Missense_Mutation p.R415I 0.38 deleterious(0.02) probably_damaging(0.934) TCGA-XF-A8HH-01 2 242371150 242371150 G C FARP2 Missense_Mutation p.K276N 0.42 deleterious(0) probably_damaging(0.99) TCGA-XF-A8HH-01 2 33952672 33952672 G A AC009499.1 Intron 0.32 TCGA-XF-A8HH-01 2 44571025 44571025 C T PREPL Missense_Mutation p.D159N 0.29 deleterious(0.03) benign(0.18) TCGA-XF-A8HH-01 2 96523187 96523187 T C ANKRD36C Missense_Mutation p.Q344R 0.26 deleterious(0) benign(0.017) TCGA-XF-A8HH-01 3 119396058 119396058 C T COX17 Missense_Mutation p.D34N 0.35 deleterious(0) probably_damaging(1) TCGA-XF-A8HH-01 3 129281952 129281952 G C PLXND1 Missense_Mutation p.I1551M 0.12 deleterious(0) probably_damaging(0.979) TCGA-XF-A8HH-01 3 132226191 132226191 A G DNAJC13 Silent p.Q1703Q 0.27 TCGA-XF-A8HH-01 3 38136501 38136501 G A DLEC1 Missense_Mutation p.R684K 0.31 tolerated(0.4) benign(0) TCGA-XF-A8HH-01 3 47887807 47887807 G A DHX30 Silent p.Q415Q 0.24 TCGA-XF-A8HH-01 3 57613884 57613884 A G DENND6A 3'UTR 0.46 TCGA-XF-A8HH-01 4 148545957 148545957 G C TMEM184C Missense_Mutation p.W98C 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HH-01 5 141236880 141236880 C T PCDH1 Missense_Mutation p.E1086K 0.32 deleterious(0) probably_damaging(0.991) TCGA-XF-A8HH-01 5 145176089 145176089 G A PRELID2 Silent p.G142G 0.25 TCGA-XF-A8HH-01 5 176314551 176314551 G A HK3 Nonsense_Mutation p.Q501* 0.20 TCGA-XF-A8HH-01 5 176829575 176829575 G A F12 Silent p.L552L 0.24 TCGA-XF-A8HH-01 5 21842319 21842319 G A CDH12 Silent p.V255V 0.24 TCGA-XF-A8HH-01 5 78610630 78610630 G A JMY Missense_Mutation p.R872Q 0.21 deleterious(0.04) probably_damaging(0.937) TCGA-XF-A8HH-01 5 93294586 93294586 G A FAM172A Missense_Mutation p.H155Y 0.35 deleterious(0) probably_damaging(0.915) TCGA-XF-A8HH-01 5 96504509 96504509 C T RIOK2 Missense_Mutation p.R276H 0.07 deleterious(0) probably_damaging(0.951) TCGA-XF-A8HH-01 6 112575049 112575049 C G LAMA4 Intron 0.16 TCGA-XF-A8HH-01 6 32032767 32032767 G A TNXB Silent p.F2224F 0.35 TCGA-XF-A8HH-01 6 38841115 38841115 C T DNAH8 Missense_Mutation p.P2311L 0.12 possibly_damaging(0.573) TCGA-XF-A8HH-01 6 41874896 41874896 C T MED20 Missense_Mutation p.G185S 0.16 tolerated(0.79) benign(0.001) TCGA-XF-A8HH-01 6 49573475 49573475 T A RHAG 3'UTR 0.30 TCGA-XF-A8HH-01 6 7880647 7880647 G A BMP6 3'UTR 0.10 TCGA-XF-A8HH-01 6 82950048 82950048 G A IBTK Silent p.G52G 0.09 TCGA-XF-A8HH-01 7 102960101 102960101 G A DNAJC2 Silent p.L399L 0.21 TCGA-XF-A8HH-01 7 99247777 99247777 C T CYP3A5 Missense_Mutation p.M444I 0.26 deleterious(0) possibly_damaging(0.793) TCGA-XF-A8HH-01 8 102589686 102589686 C G GRHL2 Silent p.L314L 0.08 TCGA-XF-A8HH-01 8 102589737 102589737 C G GRHL2 Silent p.V331V 0.08 TCGA-XF-A8HH-01 8 117862883 117862883 C - RAD21 Frame_Shift_Del p.E532Kfs*80 0.14 TCGA-XF-A8HH-01 8 120631527 120631527 C G ENPP2 Missense_Mutation p.D146H 0.26 deleterious(0.04) benign(0.067) TCGA-XF-A8HH-01 8 23160801 23160801 C G LOXL2 Missense_Mutation p.E664Q 0.33 tolerated(0.4) possibly_damaging(0.466) TCGA-XF-A8HH-01 9 101748257 101748257 G A COL15A1 Missense_Mutation p.E171K 0.21 tolerated(0.09) benign(0.174) TCGA-XF-A8HH-01 9 103947746 103947746 G A LPPR1 5'UTR 0.17 TCGA-XF-A8HH-01 9 119097189 119097189 C G PAPPA Silent p.V1149V 0.16 TCGA-XF-A8HH-01 9 124110341 124110341 C T AL161784.1 Silent p.L37L 0.22 TCGA-XF-A8HH-01 9 34241318 34241318 G A UBAP1 Missense_Mutation p.D163N 0.28 tolerated(0.44) benign(0.004) TCGA-XF-A8HH-01 9 711641 711641 C G KANK1 Missense_Mutation p.S292C 0.30 deleterious(0) probably_damaging(0.921) TCGA-XF-A8HH-01 9 84606360 84606360 G A SPATA31D1 Silent p.P325P 0.29 TCGA-XF-A8HH-01 X 106310709 106310709 G C RBM41 3'UTR 0.21 TCGA-XF-A8HH-01 X 133527538 133527538 C T PHF6 Missense_Mutation p.S83F 0.39 deleterious(0) probably_damaging(0.938) TCGA-XF-A8HH-01 X 134185771 134185771 G A FAM127B 3'UTR 0.32 TCGA-XF-A8HH-01 X 155004068 155004068 G A SPRY3 Missense_Mutation p.E179K 0.35 deleterious(0.01) possibly_damaging(0.507) TCGA-XF-A8HH-01 X 40534580 40534580 C T MED14 Missense_Mutation p.D972N 0.25 tolerated(0.46) benign(0.008) TCGA-XF-A8HH-01 X 44929442 44929443 CA T KDM6A Frame_Shift_Del p.H848Sfs*19 0.30 TCGA-XF-A8HH-01 X 55247847 55247847 C G PAGE5 Nonsense_Mutation p.S31* 0.13 TCGA-XF-A8HH-01 X 75393483 75393483 G A PBDC1 Missense_Mutation p.D32N 0.36 deleterious(0.05) benign(0.284) TCGA-XF-A8HH-01 X 96684678 96684678 C T DIAPH2 Missense_Mutation p.L1059F 0.18 deleterious(0) probably_damaging(1) TCGA-XF-A8HI-01 10 105184743 105184743 G A PDCD11 Silent p.L922L 0.46 TCGA-XF-A8HI-01 10 3150904 3150904 G A PFKP Silent p.T294T 0.14 TCGA-XF-A8HI-01 10 76735805 76735805 T C KAT6B Silent p.R570R 0.34 TCGA-XF-A8HI-01 11 108119657 108119657 C G ATM Intron 0.32 TCGA-XF-A8HI-01 11 108218086 108218086 G C ATM Missense_Mutation p.D2889H 0.42 deleterious(0) probably_damaging(1) TCGA-XF-A8HI-01 11 11373820 11373820 G A CSNK2A3 Missense_Mutation p.R283C 0.38 deleterious(0) probably_damaging(0.967) TCGA-XF-A8HI-01 11 118344314 118344314 C T KMT2A Nonsense_Mutation p.Q814* 0.48 TCGA-XF-A8HI-01 11 47494774 47494774 C T CELF1 Missense_Mutation p.G426E 0.10 deleterious(0) probably_damaging(0.994) TCGA-XF-A8HI-01 11 58391603 58391603 G C CNTF Missense_Mutation p.E71Q 0.40 tolerated(0.19) possibly_damaging(0.825) TCGA-XF-A8HI-01 11 69456203 69456203 C T CCND1 Missense_Mutation p.S41L 0.42 tolerated(0.13) benign(0.393) TCGA-XF-A8HI-01 12 54109606 54109606 C T CALCOCO1 Missense_Mutation p.E411K 0.35 deleterious(0.01) possibly_damaging(0.755) TCGA-XF-A8HI-01 13 111870217 111870217 C G ARHGEF7 Silent p.V241V 0.48 TCGA-XF-A8HI-01 14 102814993 102814993 C G CINP Silent p.L195L 0.42 TCGA-XF-A8HI-01 14 55618519 55618519 C G DLGAP5 Silent p.L754L 0.37 TCGA-XF-A8HI-01 14 55618613 55618613 C T DLGAP5 Missense_Mutation p.R723K 0.40 tolerated(0.38) benign(0) TCGA-XF-A8HI-01 14 94517585 94517585 C T DDX24 Silent p.P844P 0.47 TCGA-XF-A8HI-01 15 22332489 22332489 C T RP11-69H14.6 RNA 0.27 TCGA-XF-A8HI-01 15 69003961 69003961 C T CORO2B Silent p.F188F 0.45 TCGA-XF-A8HI-01 16 50746101 50746101 G A NOD2 Missense_Mutation p.R760H 0.41 tolerated(0.05) benign(0.014) TCGA-XF-A8HI-01 16 57463056 57463056 C T CIAPIN1 3'UTR 0.43 TCGA-XF-A8HI-01 16 69973022 69973022 C T WWP2 Silent p.L812L 0.67 TCGA-XF-A8HI-01 16 71957242 71957242 C T IST1 Missense_Mutation p.H284Y 0.37 tolerated(0.75) unknown(0) TCGA-XF-A8HI-01 16 75675615 75675615 C T KARS Silent p.L51L 0.46 TCGA-XF-A8HI-01 16 84690536 84690536 C T KLHL36 Silent p.L41L 0.48 TCGA-XF-A8HI-01 16 84690923 84690923 C T KLHL36 Silent p.F170F 0.29 TCGA-XF-A8HI-01 16 87921640 87921640 A G CA5A 3'UTR 0.41 TCGA-XF-A8HI-01 16 88717388 88717388 C A CYBA Nonsense_Mutation p.E12* 0.56 TCGA-XF-A8HI-01 17 18700977 18700977 G C TVP23B Missense_Mutation p.R109T 0.34 deleterious(0) benign(0.3) TCGA-XF-A8HI-01 17 27031749 27031749 G C PROCA1 Silent p.V68V 0.06 TCGA-XF-A8HI-01 17 33689974 33689974 G C SLFN11 Missense_Mutation p.H285D 0.34 deleterious(0) probably_damaging(0.979) TCGA-XF-A8HI-01 17 41143632 41143632 G C RUNDC1 Missense_Mutation p.E581Q 0.46 tolerated(0.29) probably_damaging(1) TCGA-XF-A8HI-01 17 47699369 47699369 C T SPOP Missense_Mutation p.E47K 0.44 tolerated(0.05) possibly_damaging(0.812) TCGA-XF-A8HI-01 17 53797988 53797988 G A TMEM100 3'UTR 0.40 TCGA-XF-A8HI-01 17 55078337 55078337 C T SCPEP1 Silent p.L372L 0.44 TCGA-XF-A8HI-01 17 7556777 7556777 C T ATP1B2 Silent p.V66V 0.40 TCGA-XF-A8HI-01 17 77707410 77707410 G A ENPP7 Missense_Mutation p.D120N 0.49 deleterious(0) probably_damaging(0.986) TCGA-XF-A8HI-01 18 12325476 12325477 - CCGA TUBB6 Frame_Shift_Ins p.A231Dfs*20 0.44 TCGA-XF-A8HI-01 18 34839202 34839202 G C CELF4 Missense_Mutation p.I425M 0.42 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HI-01 19 18778648 18778648 C T KLHL26 Silent p.P147P 0.52 TCGA-XF-A8HI-01 19 48374738 48374738 G A SULT2A1 Missense_Mutation p.P278S 0.42 deleterious(0.04) possibly_damaging(0.762) TCGA-XF-A8HI-01 19 56736197 56736197 C T ZSCAN5A Silent p.L73L 0.05 TCGA-XF-A8HI-01 1 14149651 14149651 C T PRDM2 Intron 0.40 TCGA-XF-A8HI-01 1 144917523 144917523 G A PDE4DIP Silent p.L527L 0.14 TCGA-XF-A8HI-01 1 152080088 152080088 C G TCHH Missense_Mutation p.E1869Q 0.28 benign(0.403) TCGA-XF-A8HI-01 1 197098362 197098362 G C ASPM Silent p.L905L 0.05 TCGA-XF-A8HI-01 1 227381560 227381560 C A CDC42BPA Missense_Mutation p.D176Y 0.70 deleterious(0) possibly_damaging(0.882) TCGA-XF-A8HI-01 1 247694935 247694935 C T OR2C3 Silent p.L293L 0.49 TCGA-XF-A8HI-01 1 44468564 44468564 G C SLC6A9 Silent p.V301V 0.06 TCGA-XF-A8HI-01 1 65321246 65321246 G A JAK1 Missense_Mutation p.R532C 0.39 deleterious(0) possibly_damaging(0.77) TCGA-XF-A8HI-01 1 6659244 6659244 C T KLHL21 Silent p.L430L 0.27 TCGA-XF-A8HI-01 20 60881287 60881287 G A ADRM1 Missense_Mutation p.R122Q 0.05 deleterious(0.01) benign(0.118) TCGA-XF-A8HI-01 21 10920138 10920138 C T TPTE Silent p.R372R 0.14 TCGA-XF-A8HI-01 21 10971325 10971325 G A TPTE Missense_Mutation p.A11V 0.18 tolerated_low_confidence(0.71) benign(0) TCGA-XF-A8HI-01 21 37618336 37618336 T A DOPEY2 Missense_Mutation p.I1353N 0.50 deleterious(0.02) possibly_damaging(0.756) TCGA-XF-A8HI-01 22 44892883 44892883 C T LDOC1L Missense_Mutation p.R185Q 0.56 tolerated(0.05) possibly_damaging(0.776) TCGA-XF-A8HI-01 22 46794520 46794520 G A CELSR1 Silent p.I1809I 0.14 TCGA-XF-A8HI-01 2 107057822 107057822 C T RGPD3 Silent p.K331K 0.20 TCGA-XF-A8HI-01 2 121554994 121554994 C G GLI2 Missense_Mutation p.S33C 0.05 tolerated_low_confidence(0.11) benign(0.001) TCGA-XF-A8HI-01 2 136548244 136548244 G A LCT Silent p.I1773I 0.40 TCGA-XF-A8HI-01 2 141533779 141533779 G C LRP1B Missense_Mutation p.N1796K 0.10 benign(0.001) TCGA-XF-A8HI-01 2 160737660 160737660 A G LY75-CD302 Silent p.Y446Y 0.06 TCGA-XF-A8HI-01 2 169791708 169791708 G A ABCB11 Silent p.F1014F 0.52 TCGA-XF-A8HI-01 2 179544759 179544759 C T TTN Missense_Mutation p.E11148K 0.38 TCGA-XF-A8HI-01 2 238274541 238274541 C G COL6A3 Missense_Mutation p.G1880R 0.40 possibly_damaging(0.67) TCGA-XF-A8HI-01 2 31360975 31360975 C T GALNT14 5'UTR 0.31 TCGA-XF-A8HI-01 2 55544785 55544785 C T CCDC88A Missense_Mutation p.E1172K 0.47 deleterious(0) possibly_damaging(0.479) TCGA-XF-A8HI-01 2 84784904 84784904 T A DNAH6 Missense_Mutation p.S550T 0.09 tolerated(0.2) benign(0.046) TCGA-XF-A8HI-01 3 136240142 136240142 C T STAG1 Missense_Mutation p.E197K 0.05 tolerated(0.13) possibly_damaging(0.696) TCGA-XF-A8HI-01 3 138409894 138409894 C A PIK3CB Nonsense_Mutation p.E662* 0.48 TCGA-XF-A8HI-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.50 deleterious(0.04) probably_damaging(0.96) TCGA-XF-A8HI-01 3 44488829 44488829 G A ZNF445 Silent p.L778L 0.43 TCGA-XF-A8HI-01 3 52440365 52440370 GTTGAA - BAP1 In_Frame_Del p.F228_N229del 0.40 TCGA-XF-A8HI-01 4 100264199 100264199 G A ADH1C Missense_Mutation p.S194F 0.07 probably_damaging(1) TCGA-XF-A8HI-01 4 114279219 114279219 G C ANK2 Missense_Mutation p.E3149Q 0.53 possibly_damaging(0.602) TCGA-XF-A8HI-01 4 121957767 121957767 G C NDNF Missense_Mutation p.I453M 0.43 deleterious(0.01) probably_damaging(0.968) TCGA-XF-A8HI-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.24 deleterious(0.01) possibly_damaging(0.594) TCGA-XF-A8HI-01 4 2664713 2664713 G C FAM193A Missense_Mutation p.D341H 0.37 deleterious(0) possibly_damaging(0.81) TCGA-XF-A8HI-01 4 77661963 77661963 G C SHROOM3 Missense_Mutation p.Q879H 0.36 tolerated(0.08) benign(0.135) TCGA-XF-A8HI-01 5 150922708 150922708 G A FAT2 Silent p.F2660F 0.55 TCGA-XF-A8HI-01 5 2749825 2749825 G A IRX2 Missense_Mutation p.P109L 0.45 deleterious(0) possibly_damaging(0.734) TCGA-XF-A8HI-01 5 34824421 34824421 G A RAI14 Missense_Mutation p.R828K 0.47 tolerated(0.79) benign(0.015) TCGA-XF-A8HI-01 5 36117954 36117954 G C LMBRD2 Missense_Mutation p.I395M 0.43 tolerated(0.08) benign(0.02) TCGA-XF-A8HI-01 5 71492489 71492489 G A MAP1B Missense_Mutation p.E1103K 0.47 probably_damaging(0.99) TCGA-XF-A8HI-01 5 79743932 79743932 C T ZFYVE16 Nonsense_Mutation p.Q938* 0.42 TCGA-XF-A8HI-01 6 154743711 154743711 G A CNKSR3 Missense_Mutation p.R292C 0.38 deleterious(0) probably_damaging(1) TCGA-XF-A8HI-01 6 99729291 99729291 T A FAXC Missense_Mutation p.R327W 0.08 deleterious(0) probably_damaging(0.992) TCGA-XF-A8HI-01 7 112723735 112723735 G A GPR85 Missense_Mutation p.R348C 0.44 tolerated(0.05) possibly_damaging(0.853) TCGA-XF-A8HI-01 7 138943300 138943300 C G UBN2 Missense_Mutation p.L244V 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-XF-A8HI-01 7 20721129 20721129 C T ABCB5 Missense_Mutation p.A570V 0.35 tolerated(0.23) benign(0.138) TCGA-XF-A8HI-01 7 91851243 91851243 C G KRIT1 Silent p.V512V 0.07 TCGA-XF-A8HI-01 9 113219584 113219584 G A SVEP1 Nonsense_Mutation p.Q1209* 0.84 TCGA-XF-A8HI-01 9 135211731 135211731 G C SETX Missense_Mutation p.L224V 0.68 deleterious(0) probably_damaging(0.998) TCGA-XF-A8HI-01 9 39103886 39103886 G A CNTNAP3 Silent p.F797F 0.61 TCGA-XF-A8HI-01 9 90254576 90254576 G C DAPK1 Missense_Mutation p.V189L 0.72 deleterious(0.01) benign(0.39) TCGA-XF-A8HI-01 X 110494221 110494221 G A CAPN6 Missense_Mutation p.T361I 0.49 deleterious(0.05) probably_damaging(0.961) TCGA-XF-A8HI-01 X 123197751 123197752 - A STAG2 Frame_Shift_Ins p.T626Nfs*9 0.27 TCGA-XF-A8HI-01 X 135732524 135732524 G A CD40LG Missense_Mutation p.E86K 0.08 tolerated(0.8) benign(0.006) TCGA-XF-A8HI-01 X 152807848 152807848 G A ATP2B3 Silent p.L244L 0.60 TCGA-XF-A8HI-01 X 43652676 43652676 C T MAOB Nonsense_Mutation p.W306* 0.31 TCGA-XF-A8HI-01 X 43809246 43809246 C T NDP Silent p.G67G 0.55 TCGA-XF-A8HI-01 X 44918259 44918259 C G KDM6A Nonsense_Mutation p.S295* 0.45 TCGA-XF-A8HI-01 X 50052075 50052075 A G CCNB3 Silent p.P302P 0.37 TCGA-XF-A8HI-01 X 53106048 53106048 C G GPR173 Missense_Mutation p.S82C 0.37 deleterious(0) probably_damaging(0.967) TCGA-XF-A8HI-01 X 64751242 64751242 C T LAS1L Missense_Mutation p.R170H 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-A8HI-01 X 70282785 70282785 G C SNX12 Missense_Mutation p.I60M 0.41 tolerated(0.15) possibly_damaging(0.581) TCGA-XF-A8HI-01 X 7812149 7812149 T C VCX 3'UTR 0.10 TCGA-XF-A8HI-01 X 8138020 8138020 A G VCX2 3'UTR 0.50 TCGA-XF-A9SG-01 10 1042091 1042091 C A GTPBP4 Silent p.L123L 0.16 TCGA-XF-A9SG-01 10 112641255 112641255 G A PDCD4 Missense_Mutation p.R103Q 0.28 deleterious(0.05) benign(0.007) TCGA-XF-A9SG-01 10 112647450 112647450 G A PDCD4 Missense_Mutation p.E195K 0.39 tolerated(0.68) benign(0.058) TCGA-XF-A9SG-01 10 115804497 115804497 G A ADRB1 Silent p.E202E 0.22 TCGA-XF-A9SG-01 10 129871678 129871678 C T PTPRE Silent p.I514I 0.31 TCGA-XF-A9SG-01 10 16930500 16930500 C T CUBN Missense_Mutation p.D2941N 0.59 tolerated(0.17) probably_damaging(0.967) TCGA-XF-A9SG-01 10 70764810 70764810 T A KIAA1279 Missense_Mutation p.S178R 0.32 tolerated(0.25) benign(0.05) TCGA-XF-A9SG-01 10 78729748 78729748 A C KCNMA1 Missense_Mutation p.S724A 0.08 tolerated(0.15) possibly_damaging(0.57) TCGA-XF-A9SG-01 10 79570917 79570917 G A DLG5 Silent p.V1466V 0.07 TCGA-XF-A9SG-01 10 97369971 97369971 C T ALDH18A1 Missense_Mutation p.G730D 0.31 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 10 98127973 98127973 C G TLL2 Missense_Mutation p.E974Q 0.20 tolerated(0.11) possibly_damaging(0.833) TCGA-XF-A9SG-01 10 99327762 99327762 C T UBTD1 Silent p.F54F 0.06 TCGA-XF-A9SG-01 11 102464205 102464205 C T MMP20 Silent p.Q404Q 0.25 TCGA-XF-A9SG-01 11 102465479 102465479 C G MMP20 Missense_Mutation p.W321C 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SG-01 11 104872911 104872911 C G CASP5 Missense_Mutation p.K200N 0.27 tolerated(0.08) benign(0.021) TCGA-XF-A9SG-01 11 123909464 123909464 G A OR10G7 Missense_Mutation p.T82I 0.06 tolerated(0.3) benign(0.012) TCGA-XF-A9SG-01 11 124617415 124617415 C G VSIG2 3'UTR 0.21 TCGA-XF-A9SG-01 11 129743893 129743893 G A NFRKB Missense_Mutation p.S791L 0.44 tolerated_low_confidence(0.08) probably_damaging(0.993) TCGA-XF-A9SG-01 11 14852317 14852317 G A PDE3B Silent p.K627K 0.13 TCGA-XF-A9SG-01 11 16847986 16847986 C T PLEKHA7 Missense_Mutation p.G342R 0.47 tolerated(0.32) benign(0.04) TCGA-XF-A9SG-01 11 34101183 34101183 C G CAPRIN1 Missense_Mutation p.L233V 0.24 tolerated(0.17) probably_damaging(0.997) TCGA-XF-A9SG-01 11 34104565 34104565 G C CAPRIN1 Missense_Mutation p.E315Q 0.30 tolerated(0.05) probably_damaging(0.94) TCGA-XF-A9SG-01 11 34107638 34107638 C T CAPRIN1 Nonsense_Mutation p.Q332* 0.24 TCGA-XF-A9SG-01 11 34139948 34139948 G C NAT10 Missense_Mutation p.E226D 0.12 tolerated(0.24) benign(0.002) TCGA-XF-A9SG-01 11 34139990 34139990 G A NAT10 Silent p.E240E 0.20 TCGA-XF-A9SG-01 11 34145364 34145364 G A NAT10 Missense_Mutation p.E324K 0.27 deleterious(0) possibly_damaging(0.685) TCGA-XF-A9SG-01 11 34145864 34145864 G T NAT10 Nonsense_Mutation p.E342* 0.30 TCGA-XF-A9SG-01 11 34153065 34153065 G A NAT10 Missense_Mutation p.E503K 0.42 tolerated(0.13) benign(0.004) TCGA-XF-A9SG-01 11 34160786 34160786 G A NAT10 Missense_Mutation p.D754N 0.36 tolerated(0.88) benign(0.001) TCGA-XF-A9SG-01 11 35453946 35453946 C T PAMR1 Silent p.K724K 0.16 TCGA-XF-A9SG-01 11 48328193 48328193 G T OR4S1 Missense_Mutation p.G140V 0.19 tolerated(0.08) benign(0.425) TCGA-XF-A9SG-01 11 57003868 57003868 G A APLNR Missense_Mutation p.S204L 0.28 tolerated(0.05) benign(0.081) TCGA-XF-A9SG-01 11 57310143 57310143 G C SMTNL1 Missense_Mutation p.E28Q 0.31 tolerated(0.12) benign(0.417) TCGA-XF-A9SG-01 11 62554674 62554674 C T TAF6L Missense_Mutation p.S592L 0.27 deleterious_low_confidence(0.05) benign(0.203) TCGA-XF-A9SG-01 11 6498975 6498975 G C ARFIP2 Missense_Mutation p.I281M 0.42 deleterious(0) possibly_damaging(0.797) TCGA-XF-A9SG-01 11 65732636 65732636 G C SART1 Silent p.L167L 0.32 TCGA-XF-A9SG-01 11 65733594 65733594 G C SART1 Missense_Mutation p.D296H 0.29 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SG-01 11 9989914 9989914 C A SBF2 Missense_Mutation p.C525F 0.21 tolerated(0.57) possibly_damaging(0.629) TCGA-XF-A9SG-01 12 116420374 116420374 C T MED13L Missense_Mutation p.E1664K 0.23 deleterious(0.04) possibly_damaging(0.728) TCGA-XF-A9SG-01 12 117685175 117685175 G A NOS1 Missense_Mutation p.T968I 0.17 tolerated(0.08) benign(0.114) TCGA-XF-A9SG-01 12 124421823 124421823 C T CCDC92 Missense_Mutation p.E260K 0.14 deleterious(0.02) possibly_damaging(0.775) TCGA-XF-A9SG-01 12 14976380 14976380 G A C12orf60 Missense_Mutation p.E171K 0.21 tolerated(0.21) benign(0.111) TCGA-XF-A9SG-01 12 14976623 14976623 G C C12orf60 3'UTR 0.10 TCGA-XF-A9SG-01 12 19473515 19473515 G C PLEKHA5 Missense_Mutation p.R725T 0.23 deleterious(0.01) possibly_damaging(0.889) TCGA-XF-A9SG-01 12 40076597 40076597 C A C12orf40 Missense_Mutation p.L291I 0.20 tolerated(0.49) benign(0.006) TCGA-XF-A9SG-01 12 49220793 49220793 G T CACNB3 Nonsense_Mutation p.E343* 0.18 TCGA-XF-A9SG-01 12 49446723 49446723 C A KMT2D Nonsense_Mutation p.E363* 0.19 TCGA-XF-A9SG-01 13 103710640 103710640 C T SLC10A2 Missense_Mutation p.S157N 0.37 tolerated(0.75) benign(0.026) TCGA-XF-A9SG-01 13 113783854 113783854 C T F10 Silent p.L53L 0.28 TCGA-XF-A9SG-01 13 23908972 23908972 T A SACS Missense_Mutation p.I3015F 0.37 benign(0.206) TCGA-XF-A9SG-01 13 25016769 25016769 G A PARP4 Missense_Mutation p.L1168F 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-XF-A9SG-01 13 29600798 29600798 C T MTUS2 Silent p.L665L 0.33 TCGA-XF-A9SG-01 13 29600867 29600867 C T MTUS2 Missense_Mutation p.L688F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SG-01 13 48941717 48941720 CTTC TTTTT RB1 Frame_Shift_Ins p.L343Ffs*4 0.24 TCGA-XF-A9SG-01 13 50204623 50204623 C T ARL11 Nonsense_Mutation p.Q14* 0.23 TCGA-XF-A9SG-01 13 58207584 58207584 C A PCDH17 Missense_Mutation p.L302I 0.14 tolerated(0.49) benign(0.042) TCGA-XF-A9SG-01 13 64321060 64321060 G T AL445989.1 Missense_Mutation p.G43C 0.33 unknown(0) TCGA-XF-A9SG-01 14 19563637 19563637 C T POTEG Intron 0.10 TCGA-XF-A9SG-01 14 21559617 21559617 G C ZNF219 Missense_Mutation p.S506C 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-XF-A9SG-01 14 39601163 39601163 G A GEMIN2 Missense_Mutation p.G212E 0.30 deleterious(0.04) probably_damaging(0.957) TCGA-XF-A9SG-01 14 74062016 74062016 G A ACOT4 Missense_Mutation p.M308I 0.09 tolerated(0.35) benign(0.012) TCGA-XF-A9SG-01 15 20658754 20658754 C T HERC2P3 Intron 0.15 TCGA-XF-A9SG-01 15 25958924 25958924 C T ATP10A Silent p.K747K 0.08 TCGA-XF-A9SG-01 15 40093494 40093494 G A GPR176 Nonsense_Mutation p.Q463* 0.36 TCGA-XF-A9SG-01 15 83349453 83349453 C T AP3B2 Missense_Mutation p.E276K 0.28 tolerated(0.16) benign(0.168) TCGA-XF-A9SG-01 15 89402183 89402183 G C ACAN Missense_Mutation p.D2123H 0.15 deleterious(0.01) possibly_damaging(0.76) TCGA-XF-A9SG-01 16 12758794 12758794 C T CPPED1 Silent p.L298L 0.14 TCGA-XF-A9SG-01 16 20384169 20384169 G A PDILT Silent p.I291I 0.25 TCGA-XF-A9SG-01 16 20792027 20792027 C G ACSM3 Intron 0.40 TCGA-XF-A9SG-01 16 231038 231038 C T HBQ1 Silent p.P120P 0.32 TCGA-XF-A9SG-01 16 231052 231052 C T HBQ1 Missense_Mutation p.S125L 0.19 deleterious(0) probably_damaging(0.991) TCGA-XF-A9SG-01 16 23457184 23457184 C T COG7 Missense_Mutation p.V90I 0.17 tolerated(0.14) benign(0.075) TCGA-XF-A9SG-01 16 27517276 27517276 C G GTF3C1 Missense_Mutation p.D572H 0.21 deleterious(0.01) possibly_damaging(0.717) TCGA-XF-A9SG-01 16 3107050 3107050 C T MMP25 Silent p.D226D 0.17 TCGA-XF-A9SG-01 16 48594897 48594897 G A N4BP1 Missense_Mutation p.H553Y 0.40 tolerated(0.15) benign(0.055) TCGA-XF-A9SG-01 16 51171093 51171093 C T SALL1 Missense_Mutation p.S1302N 0.16 tolerated(0.43) benign(0.002) TCGA-XF-A9SG-01 16 58589740 58589740 T C CNOT1 Missense_Mutation p.Y851C 0.48 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SG-01 16 58756066 58756066 C T GOT2 Silent p.L121L 0.31 TCGA-XF-A9SG-01 16 66997250 66997250 G A CES3 Nonsense_Mutation p.W84* 0.30 TCGA-XF-A9SG-01 16 783422 783422 C T NARFL Silent p.L233L 0.26 TCGA-XF-A9SG-01 16 81348843 81348843 C T GAN Missense_Mutation p.P42L 0.18 deleterious(0.02) possibly_damaging(0.812) TCGA-XF-A9SG-01 17 1636853 1636853 G A WDR81 Missense_Mutation p.E1508K 0.29 tolerated(0.15) benign(0.281) TCGA-XF-A9SG-01 17 16526473 16526473 C T ZNF624 Missense_Mutation p.R576H 0.19 deleterious(0) probably_damaging(0.984) TCGA-XF-A9SG-01 17 34856977 34856977 C T MYO19 Missense_Mutation p.D727N 0.15 tolerated(0.32) benign(0.287) TCGA-XF-A9SG-01 17 34941817 34941817 G A GGNBP2 Missense_Mutation p.E435K 0.33 tolerated(0.1) benign(0.04) TCGA-XF-A9SG-01 17 37119291 37119291 C G FBXO47 5'UTR 0.24 TCGA-XF-A9SG-01 17 37421647 37421647 C T FBXL20 Intron 0.22 TCGA-XF-A9SG-01 17 38244507 38244507 G C THRA Missense_Mutation p.D246H 0.30 deleterious(0) probably_damaging(0.927) TCGA-XF-A9SG-01 17 41477068 41477068 C T ARL4D 5'UTR 0.11 TCGA-XF-A9SG-01 17 42158201 42158201 G C HDAC5 Missense_Mutation p.S887C 0.20 deleterious(0) probably_damaging(0.984) TCGA-XF-A9SG-01 17 44039740 44039740 G A MAPT Missense_Mutation p.D13N 0.25 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SG-01 17 44590245 44590245 C T LRRC37A2 Missense_Mutation p.P56L 0.06 tolerated(1) probably_damaging(0.982) TCGA-XF-A9SG-01 17 58365902 58365902 G A USP32 Silent p.L185L 0.22 TCGA-XF-A9SG-01 17 58365912 58365912 G A USP32 Silent p.F181F 0.23 TCGA-XF-A9SG-01 17 7662788 7662788 G C DNAH2 Missense_Mutation p.E833Q 0.22 probably_damaging(0.999) TCGA-XF-A9SG-01 17 76853720 76853720 C T TIMP2 Missense_Mutation p.E117K 0.34 tolerated(0.29) benign(0.109) TCGA-XF-A9SG-01 17 7951144 7951144 G C ALOX15B Missense_Mutation p.E588Q 0.67 tolerated(0.49) probably_damaging(0.992) TCGA-XF-A9SG-01 18 116916 116916 T G ROCK1P1 RNA 0.09 TCGA-XF-A9SG-01 18 29099793 29099793 C A DSG2 Missense_Mutation p.L37M 0.17 tolerated(0.35) possibly_damaging(0.653) TCGA-XF-A9SG-01 19 1278773 1278773 C T C19orf24 Intron 0.32 TCGA-XF-A9SG-01 19 15648778 15648778 C G CYP4F22 Silent p.V215V 0.43 TCGA-XF-A9SG-01 19 2043153 2043153 A T MKNK2 Missense_Mutation p.F155I 0.22 deleterious(0) possibly_damaging(0.887) TCGA-XF-A9SG-01 19 39963878 39963878 A G SUPT5H Missense_Mutation p.Y765C 0.32 deleterious(0.01) possibly_damaging(0.886) TCGA-XF-A9SG-01 19 42909706 42909706 C G LIPE Missense_Mutation p.K791N 0.24 tolerated(0.08) benign(0.026) TCGA-XF-A9SG-01 19 53644307 53644307 T C ZNF347 Missense_Mutation p.T593A 0.27 deleterious(0) possibly_damaging(0.862) TCGA-XF-A9SG-01 19 5456732 5456732 G C ZNRF4 Silent p.T410T 0.19 TCGA-XF-A9SG-01 19 54610467 54610467 C G TFPT Missense_Mutation p.E218Q 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-XF-A9SG-01 19 8191377 8191377 C T FBN3 Silent p.G843G 0.36 TCGA-XF-A9SG-01 1 109529176 109529176 C A WDR47 Missense_Mutation p.V640L 0.17 tolerated(0.13) probably_damaging(0.997) TCGA-XF-A9SG-01 1 11007997 11007997 C T C1orf127 Missense_Mutation p.R732Q 0.26 tolerated(0.44) benign(0.001) TCGA-XF-A9SG-01 1 12343332 12343332 C T VPS13D Missense_Mutation p.L1725F 0.14 probably_damaging(0.965) TCGA-XF-A9SG-01 1 152190863 152190863 G C HRNR Missense_Mutation p.S1081C 0.24 unknown(0) TCGA-XF-A9SG-01 1 153633684 153633684 G A SNAPIN Silent p.L106L 0.08 TCGA-XF-A9SG-01 1 158226606 158226606 C G CD1A Missense_Mutation p.P212R 0.15 deleterious(0.03) possibly_damaging(0.737) TCGA-XF-A9SG-01 1 159283717 159283717 G A OR10J3 Missense_Mutation p.H245Y 0.15 deleterious(0.01) possibly_damaging(0.654) TCGA-XF-A9SG-01 1 17681173 17681173 G A PADI4 Missense_Mutation p.C434Y 0.22 tolerated(1) benign(0.366) TCGA-XF-A9SG-01 1 177247763 177247763 C T BRINP2 Silent p.S359S 0.19 TCGA-XF-A9SG-01 1 204943314 204943314 G A NFASC Silent p.P429P 0.81 TCGA-XF-A9SG-01 1 207643300 207643300 C T CR2 Nonsense_Mutation p.R360* 0.20 TCGA-XF-A9SG-01 1 214568286 214568286 G C PTPN14 Missense_Mutation p.L268V 0.17 tolerated(0.42) benign(0.009) TCGA-XF-A9SG-01 1 226030114 226030114 G C EPHX1 Missense_Mutation p.E327Q 0.67 deleterious(0) probably_damaging(0.936) TCGA-XF-A9SG-01 1 235884083 235884083 C T LYST Silent p.L3146L 0.16 TCGA-XF-A9SG-01 1 237670076 237670076 G A RYR2 Missense_Mutation p.V894I 0.66 possibly_damaging(0.872) TCGA-XF-A9SG-01 1 240371322 240371322 C T FMN2 Silent p.P1070P 0.44 TCGA-XF-A9SG-01 1 31350027 31350027 G T SDC3 Intron 0.42 TCGA-XF-A9SG-01 1 32768301 32768301 C G HDAC1 Silent p.L43L 0.61 TCGA-XF-A9SG-01 1 40129030 40129030 G C NT5C1A Silent p.L170L 0.70 TCGA-XF-A9SG-01 1 70611554 70611554 G A LRRC40 Missense_Mutation p.P580S 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 1 85587495 85587495 T C WDR63 Missense_Mutation p.M660T 0.58 tolerated(0.29) benign(0.002) TCGA-XF-A9SG-01 1 86919059 86919059 T G CLCA2 Missense_Mutation p.I721M 0.17 deleterious(0) probably_damaging(0.919) TCGA-XF-A9SG-01 20 13695734 13695734 C T ESF1 Silent p.K781K 0.34 TCGA-XF-A9SG-01 20 17617277 17617277 C T RRBP1 Missense_Mutation p.R328H 0.22 deleterious(0) possibly_damaging(0.715) TCGA-XF-A9SG-01 20 23967149 23967149 C T GGTLC1 Missense_Mutation p.D34N 0.24 tolerated(0.3) benign(0.077) TCGA-XF-A9SG-01 20 25059420 25059420 G A VSX1 Intron 0.17 TCGA-XF-A9SG-01 20 25655810 25655810 C G ZNF337 Missense_Mutation p.R705T 0.46 tolerated(0.06) possibly_damaging(0.537) TCGA-XF-A9SG-01 20 42089433 42089433 G T SRSF6 Silent p.R255R 0.17 TCGA-XF-A9SG-01 20 47888220 47888220 G A ZNFX1 Silent p.L43L 0.26 TCGA-XF-A9SG-01 20 58475848 58475848 G A SYCP2 Missense_Mutation p.S403L 0.18 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SG-01 20 5903651 5903651 G A CHGB Silent p.R287R 0.28 TCGA-XF-A9SG-01 21 30339160 30339160 C G LTN1 Missense_Mutation p.E597D 0.17 tolerated(0.19) benign(0.011) TCGA-XF-A9SG-01 22 19422283 19422283 G A MRPL40 Silent p.K54K 0.22 TCGA-XF-A9SG-01 22 22556412 22556412 G C IGLV11-55 Missense_Mutation p.D76H 0.19 deleterious(0.03) benign(0.085) TCGA-XF-A9SG-01 22 23154763 23154763 G C IGLV3-10 Missense_Mutation p.S111T 0.49 deleterious(0.05) benign(0.14) TCGA-XF-A9SG-01 22 31583100 31583100 C T RNF185 Missense_Mutation p.S7L 0.10 tolerated(0.08) unknown(0) TCGA-XF-A9SG-01 22 38511626 38511626 C T PLA2G6 Missense_Mutation p.G648R 0.20 deleterious(0) probably_damaging(0.977) TCGA-XF-A9SG-01 22 44645466 44645466 G A KIAA1644 3'UTR 0.62 TCGA-XF-A9SG-01 2 108626911 108626911 G C SLC5A7 Missense_Mutation p.R446T 0.18 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SG-01 2 109369911 109369911 C T RANBP2 Silent p.D649D 0.24 TCGA-XF-A9SG-01 2 168104815 168104815 G A XIRP2 Missense_Mutation p.E2305K 0.17 probably_damaging(0.999) TCGA-XF-A9SG-01 2 179411584 179411584 G A TTN Missense_Mutation p.S31524L 0.26 TCGA-XF-A9SG-01 2 179612720 179612720 C T TTN Intron 0.22 TCGA-XF-A9SG-01 2 1915834 1915834 G A MYT1L Missense_Mutation p.T554M 0.16 deleterious(0) probably_damaging(0.954) TCGA-XF-A9SG-01 2 198571355 198571355 G T MARS2 Missense_Mutation p.R409L 0.24 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 2 209195257 209195257 C T PIKFYVE Nonsense_Mutation p.Q1268* 0.39 TCGA-XF-A9SG-01 2 218674653 218674653 G A TNS1 Silent p.I1618I 0.27 TCGA-XF-A9SG-01 2 220075192 220075192 C T ABCB6 Silent p.T754T 0.28 TCGA-XF-A9SG-01 2 228145304 228145304 G A COL4A3 Missense_Mutation p.R791Q 0.21 unknown(0) TCGA-XF-A9SG-01 2 234638033 234638034 - GA UGT1A3 Frame_Shift_Ins p.F89Nfs*20 0.20 TCGA-XF-A9SG-01 2 237028996 237028996 G A AGAP1 Missense_Mutation p.E759K 0.12 deleterious(0.04) possibly_damaging(0.539) TCGA-XF-A9SG-01 2 27275923 27275923 G A AGBL5 Missense_Mutation p.E33K 0.24 tolerated(0.18) benign(0.053) TCGA-XF-A9SG-01 2 39008788 39008788 C T GEMIN6 Silent p.F86F 0.13 TCGA-XF-A9SG-01 2 44209439 44209439 C G LRPPRC Missense_Mutation p.R95P 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 2 46803223 46803223 C G RHOQ Intron 0.39 TCGA-XF-A9SG-01 2 53992637 53992638 - T ASB3 Frame_Shift_Ins p.V60Sfs*16 0.26 TCGA-XF-A9SG-01 2 54859866 54859866 C G SPTBN1 Nonsense_Mutation p.S1243* 0.50 TCGA-XF-A9SG-01 2 86071581 86071581 C G ST3GAL5 Missense_Mutation p.E316Q 0.07 tolerated(0.09) probably_damaging(0.91) TCGA-XF-A9SG-01 2 86254639 86254639 G A POLR1A Silent p.H1690H 0.14 TCGA-XF-A9SG-01 2 99226441 99226441 G A UNC50 Silent p.T73T 0.14 TCGA-XF-A9SG-01 3 102196517 102196517 C T ZPLD1 3'UTR 0.20 TCGA-XF-A9SG-01 3 111671434 111671434 G A PHLDB2 Missense_Mutation p.E883K 0.12 tolerated(0.08) benign(0.325) TCGA-XF-A9SG-01 3 113601646 113601646 C G GRAMD1C Missense_Mutation p.I169M 0.24 tolerated(0.6) possibly_damaging(0.634) TCGA-XF-A9SG-01 3 13367425 13367425 G A NUP210 Missense_Mutation p.S1505L 0.07 tolerated(0.14) benign(0.004) TCGA-XF-A9SG-01 3 1415636 1415636 C T CNTN6 Silent p.Y658Y 0.14 TCGA-XF-A9SG-01 3 154022956 154022956 G A DHX36 Missense_Mutation p.R299W 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-XF-A9SG-01 3 15642627 15642627 G C HACL1 Missense_Mutation p.I52M 0.13 deleterious(0.04) possibly_damaging(0.639) TCGA-XF-A9SG-01 3 157823800 157823800 G A RSRC1 5'Flank 0.34 TCGA-XF-A9SG-01 3 173998671 173998671 G A NLGN1 Missense_Mutation p.A684T 0.33 tolerated(0.14) probably_damaging(0.991) TCGA-XF-A9SG-01 3 183706417 183706417 G C ABCC5 Nonsense_Mutation p.S129* 0.19 TCGA-XF-A9SG-01 3 191861852 191861852 A G FGF12 Silent p.S226S 0.13 TCGA-XF-A9SG-01 3 192516078 192516078 C G MB21D2 3'UTR 0.35 TCGA-XF-A9SG-01 3 195778984 195778984 G A TFRC Silent p.S704S 0.17 TCGA-XF-A9SG-01 3 38655514 38655514 G A SCN5A Nonsense_Mutation p.R219* 0.14 TCGA-XF-A9SG-01 3 44496868 44496868 G A ZNF445 Silent p.F58F 0.12 TCGA-XF-A9SG-01 3 44496871 44496871 G A ZNF445 Silent p.L57L 0.11 TCGA-XF-A9SG-01 3 57994582 57994582 C T FLNB Silent p.I97I 0.38 TCGA-XF-A9SG-01 3 71179740 71179740 G T FOXP1 Nonsense_Mutation p.S32* 0.19 TCGA-XF-A9SG-01 3 9802342 9802342 G A CAMK1 Missense_Mutation p.S248F 0.11 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 3 9802407 9802407 G C CAMK1 Silent p.L226L 0.09 TCGA-XF-A9SG-01 4 111471032 111471032 C G ENPEP Missense_Mutation p.L831V 0.21 tolerated(0.08) possibly_damaging(0.885) TCGA-XF-A9SG-01 4 122780306 122780306 G A BBS7 Silent p.L123L 0.34 TCGA-XF-A9SG-01 4 144464670 144464670 G C SMARCA5 Missense_Mutation p.V638L 0.31 tolerated(0.31) benign(0.002) TCGA-XF-A9SG-01 4 160252903 160252903 C G RAPGEF2 Missense_Mutation p.S405C 0.28 tolerated(0.12) probably_damaging(0.926) TCGA-XF-A9SG-01 4 187524060 187524060 G A FAT1 Missense_Mutation p.P3827S 0.24 benign(0.01) TCGA-XF-A9SG-01 4 26483131 26483131 G A CCKAR 3'UTR 0.23 TCGA-XF-A9SG-01 4 66286164 66286164 C T EPHA5 Missense_Mutation p.E508K 0.30 tolerated(0.11) probably_damaging(0.987) TCGA-XF-A9SG-01 4 71510114 71510114 G A ENAM Missense_Mutation p.G991R 0.18 tolerated(0.55) possibly_damaging(0.627) TCGA-XF-A9SG-01 4 77288711 77288711 G A CCDC158 Silent p.L522L 0.11 TCGA-XF-A9SG-01 4 77288732 77288732 G A CCDC158 Silent p.T515T 0.11 TCGA-XF-A9SG-01 4 77288872 77288872 G C CCDC158 Missense_Mutation p.Q469E 0.13 tolerated(0.22) possibly_damaging(0.878) TCGA-XF-A9SG-01 4 77288886 77288886 G T CCDC158 Missense_Mutation p.S464Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SG-01 4 89186255 89186255 G A PPM1K Silent p.L295L 0.28 TCGA-XF-A9SG-01 4 89618726 89618726 C G NAP1L5 Missense_Mutation p.E60D 0.21 tolerated(0.79) benign(0.044) TCGA-XF-A9SG-01 4 90035039 90035039 C T TIGD2 Missense_Mutation p.S305L 0.16 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SG-01 4 90856580 90856580 G A MMRN1 Missense_Mutation p.M583I 0.25 tolerated(0.98) benign(0.003) TCGA-XF-A9SG-01 5 140167052 140167052 G A PCDHA1 Missense_Mutation p.V393I 0.13 tolerated_low_confidence(0.24) benign(0.014) TCGA-XF-A9SG-01 5 140347513 140347513 A T PCDHAC2 Missense_Mutation p.S388C 0.18 deleterious(0) probably_damaging(0.969) TCGA-XF-A9SG-01 5 177577916 177577916 C A NHP2 Missense_Mutation p.L103F 0.10 deleterious(0) probably_damaging(0.921) TCGA-XF-A9SG-01 5 180582422 180582422 G C OR2V2 Missense_Mutation p.Q160H 0.19 tolerated(0.42) probably_damaging(1) TCGA-XF-A9SG-01 5 37292016 37292016 C G NUP155 Missense_Mutation p.E1388Q 0.05 deleterious(0.01) possibly_damaging(0.855) TCGA-XF-A9SG-01 5 39383123 39383123 G C DAB2 Missense_Mutation p.S313C 0.11 deleterious(0.01) benign(0.26) TCGA-XF-A9SG-01 5 42808409 42808409 G A SEPP1 Missense_Mutation p.S16L 0.12 tolerated(0.63) benign(0) TCGA-XF-A9SG-01 5 50057699 50057699 C T PARP8 Silent p.D130D 0.12 TCGA-XF-A9SG-01 5 55083737 55083737 A G DDX4 Missense_Mutation p.K361E 0.12 tolerated(0.37) possibly_damaging(0.491) TCGA-XF-A9SG-01 5 56152511 56152511 G A MAP3K1 Silent p.L189L 0.11 TCGA-XF-A9SG-01 5 68728482 68728482 C T MARVELD2 Silent p.I437I 0.20 TCGA-XF-A9SG-01 6 10626777 10626777 G A GCNT2 Silent p.L382L 0.33 TCGA-XF-A9SG-01 6 116833364 116833364 G A FAM26E Missense_Mutation p.E169K 0.28 tolerated(0.34) possibly_damaging(0.476) TCGA-XF-A9SG-01 6 127775004 127775004 C A KIAA0408 Missense_Mutation p.K41N 0.32 deleterious(0) probably_damaging(0.982) TCGA-XF-A9SG-01 6 131220670 131220670 C T EPB41L2 Silent p.K399K 0.39 TCGA-XF-A9SG-01 6 131602849 131602849 G A AKAP7 Missense_Mutation p.E344K 0.21 deleterious(0.02) benign(0.026) TCGA-XF-A9SG-01 6 144837963 144837963 C T UTRN Missense_Mutation p.A1807V 0.31 deleterious(0.03) benign(0.405) TCGA-XF-A9SG-01 6 152832202 152832202 C T SYNE1 Missense_Mutation p.D116N 0.23 probably_damaging(0.999) TCGA-XF-A9SG-01 6 26091192 26091192 G T HFE Missense_Mutation p.R67L 0.31 deleterious(0.03) possibly_damaging(0.736) TCGA-XF-A9SG-01 6 26216643 26216643 C T HIST1H2BG Missense_Mutation p.E77K 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-XF-A9SG-01 6 29323565 29323565 C G OR5V1 Silent p.L136L 0.21 TCGA-XF-A9SG-01 6 29323965 29323965 C G OR5V1 Missense_Mutation p.R3T 0.30 tolerated(0.57) benign(0.035) TCGA-XF-A9SG-01 6 36651906 36651906 C T CDKN1A Nonsense_Mutation p.Q10* 0.44 TCGA-XF-A9SG-01 6 44222420 44222421 - A SLC35B2 3'UTR 0.14 TCGA-XF-A9SG-01 6 64356520 64356520 C T PHF3 Silent p.L22L 0.22 TCGA-XF-A9SG-01 6 76344528 76344528 G T SENP6 Splice_Site p.X153_splice 0.27 TCGA-XF-A9SG-01 6 84799201 84799201 G A MRAP2 3'UTR 0.31 TCGA-XF-A9SG-01 6 87966033 87966033 G A ZNF292 Missense_Mutation p.E896K 0.29 deleterious_low_confidence(0.04) benign(0.283) TCGA-XF-A9SG-01 6 93968002 93968002 C T EPHA7 Missense_Mutation p.G642E 0.21 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 7 120446675 120446675 G A TSPAN12 Silent p.S180S 0.14 TCGA-XF-A9SG-01 7 121608082 121608082 G A PTPRZ1 Missense_Mutation p.E68K 0.12 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SG-01 7 128640575 128640575 G A TNPO3 Missense_Mutation p.L307F 0.17 tolerated(0.1) benign(0.289) TCGA-XF-A9SG-01 7 13946208 13946208 C A ETV1 Missense_Mutation p.E319D 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A9SG-01 7 141750572 141750572 C T MGAM Missense_Mutation p.L905F 0.30 tolerated(0.17) benign(0.018) TCGA-XF-A9SG-01 7 148768137 148768137 C G ZNF786 Missense_Mutation p.R576T 0.22 deleterious(0.01) probably_damaging(0.962) TCGA-XF-A9SG-01 7 150389603 150389603 G A GIMAP2 Missense_Mutation p.D77N 0.16 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SG-01 7 158540924 158540924 G A ESYT2 Silent p.F562F 0.33 TCGA-XF-A9SG-01 7 23221660 23221660 G C NUPL2 5'UTR 0.46 TCGA-XF-A9SG-01 7 44684960 44684960 G C OGDH Missense_Mutation p.G86A 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-XF-A9SG-01 7 55224578 55224578 G A EGFR Intron 0.50 TCGA-XF-A9SG-01 7 77885404 77885404 G C MAGI2 Missense_Mutation p.Q635E 0.44 deleterious(0.02) possibly_damaging(0.844) TCGA-XF-A9SG-01 7 80374164 80374164 G A SEMA3C 3'UTR 0.46 TCGA-XF-A9SG-01 7 94033905 94033905 G C COL1A2 Missense_Mutation p.G106A 0.20 unknown(0) TCGA-XF-A9SG-01 7 94058662 94058662 C G COL1A2 Missense_Mutation p.L1292V 0.36 unknown(0) TCGA-XF-A9SG-01 8 145009405 145009405 C G PLEC Missense_Mutation p.E364Q 0.11 unknown(0) TCGA-XF-A9SG-01 8 145667764 145667764 C T TONSL Missense_Mutation p.A204T 0.09 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SG-01 8 2046709 2046709 C G MYOM2 Nonsense_Mutation p.S779* 0.27 TCGA-XF-A9SG-01 8 30703862 30703862 C T TEX15 Missense_Mutation p.G891E 0.23 tolerated(1) benign(0) TCGA-XF-A9SG-01 8 38386178 38386178 C G C8orf86 5'UTR 0.41 TCGA-XF-A9SG-01 8 55372417 55372417 C A SOX17 Missense_Mutation p.F369L 0.14 tolerated(0.43) benign(0.085) TCGA-XF-A9SG-01 8 73849283 73849283 G A KCNB2 Missense_Mutation p.E565K 0.22 tolerated_low_confidence(0.57) benign(0.013) TCGA-XF-A9SG-01 9 105768036 105768036 G A CYLC2 3'UTR 0.21 TCGA-XF-A9SG-01 9 113530256 113530256 G C MUSK Silent p.L359L 0.37 TCGA-XF-A9SG-01 9 131495738 131495738 G A ZER1 Missense_Mutation p.A737V 0.05 tolerated(0.17) benign(0.012) TCGA-XF-A9SG-01 9 136214954 136214954 C T MED22 5'Flank 0.29 TCGA-XF-A9SG-01 9 139907183 139907183 C T ABCA2 Missense_Mutation p.D1688N 0.21 tolerated(0.23) probably_damaging(0.939) TCGA-XF-A9SG-01 9 27296680 27296680 C T EQTN Missense_Mutation p.E45K 0.16 tolerated(0.83) benign(0.015) TCGA-XF-A9SG-01 9 33001576 33001576 G A APTX 5'UTR 0.16 TCGA-XF-A9SG-01 9 88201871 88201871 G A AGTPBP1 Missense_Mutation p.R930C 0.11 deleterious(0) probably_damaging(1) TCGA-XF-A9SG-01 9 91930099 91930099 C T CKS2 Missense_Mutation p.P25L 0.21 deleterious(0) benign(0.202) TCGA-XF-A9SG-01 X 109445721 109445721 C G AMMECR1 Missense_Mutation p.G248A 0.38 deleterious(0.03) possibly_damaging(0.549) TCGA-XF-A9SH-01 10 111872625 111872625 G A ADD3 Missense_Mutation p.D96N 0.38 deleterious(0) possibly_damaging(0.834) TCGA-XF-A9SH-01 10 3821774 3821774 G C KLF6 Missense_Mutation p.S270C 0.47 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SH-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.52 TCGA-XF-A9SH-01 11 116692346 116692346 C T APOA4 Missense_Mutation p.R143H 0.21 tolerated(0.25) benign(0.046) TCGA-XF-A9SH-01 11 63520561 63520561 G C RTN3 Silent p.L966L 0.33 TCGA-XF-A9SH-01 11 67075184 67075184 G A SSH3 Missense_Mutation p.R256Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SH-01 11 82989872 82989872 C T CCDC90B Missense_Mutation p.G74E 0.32 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SH-01 12 113440874 113440874 C G OAS2 Missense_Mutation p.F382L 0.12 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SH-01 12 40715858 40715858 G C LRRK2 Missense_Mutation p.R1731T 0.39 tolerated(0.16) probably_damaging(0.997) TCGA-XF-A9SH-01 12 75737490 75737492 AGC - GLIPR1L1 In_Frame_Del p.A65del 0.10 TCGA-XF-A9SH-01 12 78516175 78516175 G C NAV3 Missense_Mutation p.R1402T 0.23 deleterious(0.04) probably_damaging(0.968) TCGA-XF-A9SH-01 13 79175932 79175932 A G POU4F1 Missense_Mutation p.L293P 0.20 deleterious(0) unknown(0) TCGA-XF-A9SH-01 15 35044991 35044991 A G GJD2 Silent p.Y218Y 0.09 TCGA-XF-A9SH-01 15 56434995 56434995 C A RFX7 Nonsense_Mutation p.E128* 0.30 TCGA-XF-A9SH-01 15 72175947 72175947 G C MYO9A Missense_Mutation p.Q1796E 0.07 tolerated(0.95) benign(0.034) TCGA-XF-A9SH-01 16 11118744 11118744 G T CLEC16A Silent p.V501V 0.40 TCGA-XF-A9SH-01 16 138876 138876 T A NPRL3 Missense_Mutation p.D455V 0.26 deleterious(0) possibly_damaging(0.838) TCGA-XF-A9SH-01 17 10419589 10419589 G A MYH1 Missense_Mutation p.A92V 0.35 tolerated(0.05) benign(0.019) TCGA-XF-A9SH-01 17 15890610 15890610 G C ZSWIM7 Missense_Mutation p.I57M 0.32 tolerated(0.1) benign(0.15) TCGA-XF-A9SH-01 17 31263362 31263362 C G TMEM98 Missense_Mutation p.L104V 0.29 tolerated(0.19) possibly_damaging(0.694) TCGA-XF-A9SH-01 17 4458240 4458240 C T MYBBP1A Missense_Mutation p.M70I 0.51 tolerated(0.09) benign(0.281) TCGA-XF-A9SH-01 18 72103918 72103918 C T FAM69C Missense_Mutation p.A360T 0.27 tolerated(0.3) benign(0.001) TCGA-XF-A9SH-01 19 2099065 2099065 G A IZUMO4 Intron 0.48 TCGA-XF-A9SH-01 19 39971377 39971377 G C TIMM50 Missense_Mutation p.G65R 0.19 tolerated_low_confidence(0.14) benign(0.265) TCGA-XF-A9SH-01 19 48982424 48982424 G C CYTH2 Missense_Mutation p.R386T 0.38 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SH-01 19 55087350 55087350 G T LILRA2 Silent p.L343L 0.22 TCGA-XF-A9SH-01 19 55087354 55087354 C A LILRA2 Missense_Mutation p.Q345K 0.22 deleterious(0.03) possibly_damaging(0.714) TCGA-XF-A9SH-01 19 55703084 55703084 G A PTPRH Silent p.G761G 0.31 TCGA-XF-A9SH-01 19 6760837 6760837 G A SH2D3A Silent p.L77L 0.33 TCGA-XF-A9SH-01 1 109740254 109740254 C T KIAA1324 Silent p.V760V 0.48 TCGA-XF-A9SH-01 1 150830885 150830885 G C ARNT Missense_Mutation p.S26C 0.53 tolerated(0.06) benign(0.285) TCGA-XF-A9SH-01 1 176525627 176525627 C A PAPPA2 Silent p.R57R 0.22 TCGA-XF-A9SH-01 1 196658681 196658681 G A CFH Missense_Mutation p.G366R 0.04 tolerated(0.81) benign(0.037) TCGA-XF-A9SH-01 1 36645617 36645617 G A MAP7D1 Missense_Mutation p.E822K 0.32 unknown(0) TCGA-XF-A9SH-01 1 906112 906112 C T PLEKHN1 Missense_Mutation p.S153F 0.47 deleterious(0.04) possibly_damaging(0.549) TCGA-XF-A9SH-01 22 23237842 23237842 G C IGLL5 Missense_Mutation p.E205Q 0.28 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-XF-A9SH-01 22 40803506 40803506 G T SGSM3 Missense_Mutation p.K486N 0.32 deleterious(0) probably_damaging(0.948) TCGA-XF-A9SH-01 2 143746426 143746426 C T KYNU Intron 0.38 TCGA-XF-A9SH-01 2 24255782 24255782 C G C2orf44 Missense_Mutation p.R618T 0.41 deleterious(0) probably_damaging(0.964) TCGA-XF-A9SH-01 2 27591263 27591263 T G EIF2B4 Missense_Mutation p.Q209P 0.07 tolerated(0.2) benign(0.138) TCGA-XF-A9SH-01 3 130383928 130383928 G A COL6A6 Missense_Mutation p.R2195Q 0.46 tolerated_low_confidence(0.28) benign(0.001) TCGA-XF-A9SH-01 3 40498887 40498887 C T RPL14 5'UTR 0.62 TCGA-XF-A9SH-01 4 48996748 48996748 C T CWH43 Silent p.L208L 0.33 TCGA-XF-A9SH-01 5 157053293 157053293 T C SOX30 3'UTR 0.50 TCGA-XF-A9SH-01 5 70805910 70805910 T C BDP1 Silent p.N997N 0.30 TCGA-XF-A9SH-01 6 24174967 24174967 G A DCDC2 Silent p.A474A 0.24 TCGA-XF-A9SH-01 6 90660232 90660232 G A BACH2 Silent p.D531D 0.34 TCGA-XF-A9SH-01 7 131817813 131817813 C T PLXNA4 Missense_Mutation p.E1862K 0.43 deleterious(0) possibly_damaging(0.754) TCGA-XF-A9SH-01 7 157926407 157926407 G A PTPRN2 Silent p.S506S 0.42 TCGA-XF-A9SH-01 7 17369593 17369593 G A AHR Silent p.Q156Q 0.29 TCGA-XF-A9SH-01 7 48494724 48494724 C T ABCA13 Missense_Mutation p.T4219M 0.56 possibly_damaging(0.453) TCGA-XF-A9SH-01 7 99074062 99074062 G A ZNF789 5'UTR 0.30 TCGA-XF-A9SH-01 8 133634929 133634929 T C LRRC6 Missense_Mutation p.K281R 0.07 tolerated(0.17) benign(0.027) TCGA-XF-A9SH-01 8 145150767 145150767 C G CYC1 Missense_Mutation p.S54C 0.25 deleterious(0.01) possibly_damaging(0.827) TCGA-XF-A9SH-01 9 131702920 131702920 C T PHYHD1 Missense_Mutation p.R203C 0.43 tolerated_low_confidence(0.08) benign(0) TCGA-XF-A9SH-01 X 102968473 102968473 C T GLRA4 Missense_Mutation p.R353Q 0.22 deleterious(0.04) possibly_damaging(0.566) TCGA-XF-A9SH-01 X 154014676 154014676 C G MPP1 Splice_Site p.X161_splice 0.06 TCGA-XF-A9SH-01 X 69712062 69712062 G A DLG3 Silent p.E542E 0.41 TCGA-XF-A9SI-01 10 106960894 106960894 T C SORCS3 Missense_Mutation p.M715T 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-XF-A9SI-01 10 108337263 108337263 G A SORCS1 Intron 0.13 TCGA-XF-A9SI-01 10 1175307 1175307 C T WDR37 3'UTR 0.13 TCGA-XF-A9SI-01 10 133784416 133784416 G C BNIP3 Nonsense_Mutation p.S114* 0.09 TCGA-XF-A9SI-01 10 13672268 13672268 G A PRPF18 Silent p.K319K 0.06 TCGA-XF-A9SI-01 10 27536422 27536422 G C RP11-85G18.6 Intron 0.21 TCGA-XF-A9SI-01 10 27536578 27536578 C T RP11-85G18.6 Intron 0.15 TCGA-XF-A9SI-01 10 27536581 27536581 C T RP11-85G18.6 Intron 0.13 TCGA-XF-A9SI-01 10 27536588 27536588 C T RP11-85G18.6 Intron 0.14 TCGA-XF-A9SI-01 10 3190136 3190136 C G PITRM1 Intron 0.13 TCGA-XF-A9SI-01 10 61574511 61574511 C G CCDC6 Missense_Mutation p.L195F 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9SI-01 10 69881235 69881235 C T MYPN Nonsense_Mutation p.Q14* 0.06 TCGA-XF-A9SI-01 10 70229870 70229870 C T DNA2 Missense_Mutation p.G128E 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 10 7772013 7772013 G A ITIH2 Missense_Mutation p.D460N 0.06 tolerated(0.65) probably_damaging(1) TCGA-XF-A9SI-01 10 79581141 79581141 G C DLG5 Nonsense_Mutation p.S1034* 0.07 TCGA-XF-A9SI-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.09 TCGA-XF-A9SI-01 11 108205823 108205823 G A ATM Missense_Mutation p.R2713K 0.06 tolerated(0.06) possibly_damaging(0.809) TCGA-XF-A9SI-01 11 118455317 118455317 C A ARCN1 Missense_Mutation p.S259Y 0.11 tolerated(0.08) benign(0.234) TCGA-XF-A9SI-01 11 120732761 120732761 G C GRIK4 Missense_Mutation p.E280Q 0.10 tolerated(0.06) benign(0.179) TCGA-XF-A9SI-01 11 121016695 121016695 G C TECTA Missense_Mutation p.K1325N 0.05 tolerated(0.32) possibly_damaging(0.601) TCGA-XF-A9SI-01 11 123524554 123524554 C A SCN3B 5'UTR 0.14 TCGA-XF-A9SI-01 11 14480226 14480226 G C COPB1 Missense_Mutation p.S885C 0.11 deleterious(0.04) benign(0.033) TCGA-XF-A9SI-01 11 15267491 15267491 G A INSC Missense_Mutation p.E549K 0.09 deleterious(0.04) benign(0.397) TCGA-XF-A9SI-01 11 20388763 20388763 C T HTATIP2 Missense_Mutation p.S114F 0.17 deleterious(0.01) benign(0.396) TCGA-XF-A9SI-01 11 22242655 22242655 C T ANO5 Nonsense_Mutation p.Q65* 0.14 TCGA-XF-A9SI-01 11 46782273 46782273 G C CKAP5 Missense_Mutation p.S1428C 0.17 deleterious(0.02) benign(0.345) TCGA-XF-A9SI-01 11 47772741 47772741 G C FNBP4 Missense_Mutation p.Q247E 0.11 tolerated(0.11) benign(0.173) TCGA-XF-A9SI-01 11 57569339 57569339 G C CTNND1 Missense_Mutation p.R364T 0.09 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SI-01 11 58979862 58979862 G C MPEG1 Silent p.V159V 0.05 TCGA-XF-A9SI-01 11 6023419 6023419 C T OR56A4 Silent p.R320R 0.17 TCGA-XF-A9SI-01 11 611697 611697 G A PHRF1 Missense_Mutation p.V1623M 0.09 deleterious(0) probably_damaging(0.938) TCGA-XF-A9SI-01 11 62287597 62287597 G A AHNAK Silent p.I4764I 0.08 TCGA-XF-A9SI-01 11 65113160 65113160 C T DPF2 Nonsense_Mutation p.R221* 0.05 TCGA-XF-A9SI-01 11 6621803 6621803 C T RRP8 Silent p.L388L 0.10 TCGA-XF-A9SI-01 11 94906420 94906420 C T SESN3 Silent p.%3D 0.14 TCGA-XF-A9SI-01 11 96117710 96117710 C G CCDC82 Missense_Mutation p.D68H 0.10 deleterious(0.02) possibly_damaging(0.46) TCGA-XF-A9SI-01 12 100904719 100904719 C A NR1H4 Nonsense_Mutation p.Y91* 0.09 TCGA-XF-A9SI-01 12 100904721 100904721 C G NR1H4 Missense_Mutation p.S92C 0.07 tolerated(0.06) benign(0.012) TCGA-XF-A9SI-01 12 102023305 102023305 G T MYBPC1 Missense_Mutation p.G66V 0.07 deleterious(0.01) benign(0.25) TCGA-XF-A9SI-01 12 10532339 10532339 G A KLRK1 Silent p.F67F 0.08 TCGA-XF-A9SI-01 12 105418187 105418187 G T ALDH1L2 3'UTR 0.12 TCGA-XF-A9SI-01 12 10760501 10760501 G C MAGOHB Missense_Mutation p.S100C 0.11 deleterious(0.02) benign(0.267) TCGA-XF-A9SI-01 12 108954794 108954794 G T SART3 Missense_Mutation p.A46E 0.17 tolerated_low_confidence(0.33) benign(0.009) TCGA-XF-A9SI-01 12 109200140 109200140 G A SSH1 Silent p.L254L 0.06 TCGA-XF-A9SI-01 12 11138533 11138533 G C TAS2R50 3'UTR 0.05 TCGA-XF-A9SI-01 12 113447007 113447007 G A OAS2 Missense_Mutation p.D671N 0.10 tolerated(0.45) benign(0.05) TCGA-XF-A9SI-01 12 119631570 119631570 C T HSPB8 Silent p.I166I 0.06 TCGA-XF-A9SI-01 12 120760105 120760105 C T PLA2G1B Missense_Mutation p.C113Y 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 12 122992806 122992806 C G RSRC2 Missense_Mutation p.E332Q 0.09 tolerated(0.18) unknown(0) TCGA-XF-A9SI-01 12 123061534 123061534 G C KNTC1 Missense_Mutation p.E893D 0.18 tolerated(0.1) probably_damaging(0.956) TCGA-XF-A9SI-01 12 123345037 123345037 C G HIP1R Missense_Mutation p.S876C 0.09 deleterious(0) probably_damaging(0.982) TCGA-XF-A9SI-01 12 123463887 123463887 C T OGFOD2 Silent p.L289L 0.13 TCGA-XF-A9SI-01 12 13062015 13062015 C G GPRC5A Missense_Mutation p.P278A 0.13 deleterious(0) possibly_damaging(0.736) TCGA-XF-A9SI-01 12 132508361 132508361 C T EP400 Missense_Mutation p.T1577I 0.07 unknown(0) TCGA-XF-A9SI-01 12 24995118 24995118 C G BCAT1 Missense_Mutation p.D251H 0.10 deleterious(0.03) benign(0.003) TCGA-XF-A9SI-01 12 26749986 26749986 C G ITPR2 Missense_Mutation p.E1362Q 0.08 tolerated(0.11) possibly_damaging(0.63) TCGA-XF-A9SI-01 12 2968354 2968354 G C FOXM1 Missense_Mutation p.S619C 0.08 deleterious(0.01) possibly_damaging(0.834) TCGA-XF-A9SI-01 12 31613289 31613289 C A DENND5B Nonsense_Mutation p.E311* 0.09 TCGA-XF-A9SI-01 12 32734962 32734962 G A FGD4 Missense_Mutation p.G54E 0.12 tolerated_low_confidence(0.06) benign(0.367) TCGA-XF-A9SI-01 12 40681191 40681191 C G LRRK2 Missense_Mutation p.Q847E 0.13 deleterious(0) possibly_damaging(0.472) TCGA-XF-A9SI-01 12 443457 443457 A C KDM5A Missense_Mutation p.F480L 0.15 deleterious(0) probably_damaging(0.99) TCGA-XF-A9SI-01 12 46591572 46591572 G A SLC38A1 Silent p.F431F 0.10 TCGA-XF-A9SI-01 12 48919792 48919792 C G OR8S1 Missense_Mutation p.I126M 0.12 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SI-01 12 49499738 49499738 C G LMBR1L Missense_Mutation p.D54H 0.07 deleterious(0.01) possibly_damaging(0.779) TCGA-XF-A9SI-01 12 51072505 51072505 G C DIP2B Missense_Mutation p.Q320H 0.12 tolerated(0.53) benign(0.107) TCGA-XF-A9SI-01 12 53703045 53703045 C T AAAS Silent p.E277E 0.16 TCGA-XF-A9SI-01 12 56385209 56385209 G A RAB5B Missense_Mutation p.M168I 0.10 tolerated(0.53) benign(0.041) TCGA-XF-A9SI-01 12 6497984 6497984 G A LTBR Missense_Mutation p.R265H 0.08 tolerated(0.62) benign(0.001) TCGA-XF-A9SI-01 12 7045614 7045614 C G ATN1 Missense_Mutation p.S395C 0.14 probably_damaging(0.993) TCGA-XF-A9SI-01 12 70960368 70960368 C A PTPRB Nonsense_Mutation p.E1251* 0.17 TCGA-XF-A9SI-01 12 76462752 76462752 G A NAP1L1 Nonsense_Mutation p.Q14* 0.10 TCGA-XF-A9SI-01 12 7647698 7647698 C T CD163 Missense_Mutation p.E467K 0.10 tolerated(0.09) possibly_damaging(0.889) TCGA-XF-A9SI-01 12 81111303 81111303 C T MYF5 Missense_Mutation p.S154L 0.06 deleterious(0) possibly_damaging(0.821) TCGA-XF-A9SI-01 12 86373284 86373284 T A MGAT4C Missense_Mutation p.H407L 0.14 tolerated(0.1) benign(0.071) TCGA-XF-A9SI-01 12 9230323 9230323 C T A2M Missense_Mutation p.G1084R 0.10 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SI-01 12 94244079 94244079 C T CRADD 3'UTR 0.08 TCGA-XF-A9SI-01 12 96131821 96131821 C T NTN4 Silent p.L229L 0.09 TCGA-XF-A9SI-01 12 96368113 96368113 C T HAL Missense_Mutation p.R624K 0.08 tolerated(0.53) benign(0) TCGA-XF-A9SI-01 12 994570 994570 C G WNK1 Missense_Mutation p.H1534D 0.12 tolerated_low_confidence(0.53) benign(0.005) TCGA-XF-A9SI-01 12 9980153 9980153 G C KLRF1 Missense_Mutation p.E5Q 0.10 deleterious(0.02) possibly_damaging(0.518) TCGA-XF-A9SI-01 13 113337634 113337634 T C C13orf35 Silent p.Y102Y 0.20 TCGA-XF-A9SI-01 13 113964044 113964044 C T LAMP1 Silent p.L90L 0.06 TCGA-XF-A9SI-01 13 23912527 23912527 G A SACS Silent p.L1830L 0.15 TCGA-XF-A9SI-01 13 39262552 39262552 C T FREM2 Silent p.F357F 0.11 TCGA-XF-A9SI-01 13 41766891 41766891 G C KBTBD7 Missense_Mutation p.H501Q 0.07 tolerated(0.3) benign(0.008) TCGA-XF-A9SI-01 13 41834746 41834746 C T MTRF1 Missense_Mutation p.E100K 0.04 tolerated(0.06) benign(0.309) TCGA-XF-A9SI-01 13 49037866 49037866 G C RB1 Splice_Site p.X703_splice 0.11 TCGA-XF-A9SI-01 13 50115073 50115073 C G RCBTB1 Missense_Mutation p.R465T 0.09 deleterious(0.01) benign(0.284) TCGA-XF-A9SI-01 13 50115113 50115113 C T RCBTB1 Missense_Mutation p.E452K 0.23 deleterious(0) possibly_damaging(0.9) TCGA-XF-A9SI-01 13 94482628 94482628 C T GPC6 Missense_Mutation p.H181Y 0.14 tolerated(1) benign(0.03) TCGA-XF-A9SI-01 13 95112454 95112454 G T DCT Missense_Mutation p.A357E 0.06 tolerated(0.05) benign(0.072) TCGA-XF-A9SI-01 14 102808516 102808516 G C ZNF839 Nonstop_Mutation p.*928Yext*5 0.08 TCGA-XF-A9SI-01 14 22363081 22363081 C T TRAV8-4 Missense_Mutation p.S71L 0.05 deleterious(0.03) possibly_damaging(0.481) TCGA-XF-A9SI-01 14 23890203 23890203 G A MYH7 Silent p.L1100L 0.09 TCGA-XF-A9SI-01 14 51224088 51224088 C G NIN Missense_Mutation p.K1220N 0.08 deleterious(0) probably_damaging(0.928) TCGA-XF-A9SI-01 14 51224300 51224300 C G NIN Missense_Mutation p.D1150H 0.06 tolerated(0.12) possibly_damaging(0.853) TCGA-XF-A9SI-01 14 51347258 51347258 A G ABHD12B Missense_Mutation p.I142V 0.07 tolerated(0.09) benign(0.032) TCGA-XF-A9SI-01 14 60752540 60752540 G C PPM1A Intron 0.21 TCGA-XF-A9SI-01 14 73640500 73640500 G C PSEN1 Intron 0.10 TCGA-XF-A9SI-01 15 40295447 40295447 G A EIF2AK4 Missense_Mutation p.E1097K 0.10 deleterious(0.02) benign(0.292) TCGA-XF-A9SI-01 15 40660609 40660609 G C DISP2 Missense_Mutation p.E766Q 0.07 deleterious(0) probably_damaging(0.938) TCGA-XF-A9SI-01 15 42003149 42003149 C T MGA Nonsense_Mutation p.R896* 0.05 TCGA-XF-A9SI-01 15 43622444 43622444 G A LCMT2 Missense_Mutation p.R82C 0.10 deleterious(0.02) possibly_damaging(0.75) TCGA-XF-A9SI-01 15 44856860 44856860 C A SPG11 Missense_Mutation p.D2346Y 0.10 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SI-01 15 45003787 45003787 C G B2M Missense_Mutation p.L15V 0.15 tolerated(0.26) benign(0.022) TCGA-XF-A9SI-01 15 48703192 48703192 G C FBN1 Missense_Mutation p.H2871D 0.08 probably_damaging(0.991) TCGA-XF-A9SI-01 15 50254203 50254203 C G ATP8B4 Missense_Mutation p.D420H 0.07 tolerated(0.15) possibly_damaging(0.633) TCGA-XF-A9SI-01 15 50769184 50769184 A G USP8 Missense_Mutation p.I330V 0.07 tolerated(1) benign(0) TCGA-XF-A9SI-01 15 52901090 52901090 T C FAM214A Missense_Mutation p.Q674R 0.06 deleterious(0.02) benign(0.027) TCGA-XF-A9SI-01 15 55759360 55759360 C T DYX1C1 Splice_Site p.X136_splice 0.11 TCGA-XF-A9SI-01 15 59191805 59191805 C T SLTM Silent p.K307K 0.08 TCGA-XF-A9SI-01 15 71124899 71124899 C G LARP6 Missense_Mutation p.R323T 0.08 tolerated(0.08) benign(0.258) TCGA-XF-A9SI-01 15 72580787 72580787 C T CELF6 Missense_Mutation p.E394K 0.10 deleterious(0) benign(0.263) TCGA-XF-A9SI-01 15 74865511 74865511 C G ARID3B Missense_Mutation p.F221L 0.09 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SI-01 15 78461301 78461301 C G IDH3A Nonsense_Mutation p.S352* 0.04 TCGA-XF-A9SI-01 15 85164585 85164585 G C ZSCAN2 Missense_Mutation p.E387Q 0.08 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SI-01 15 93558002 93558002 C T CHD2 Missense_Mutation p.S1590F 0.05 deleterious(0.01) benign(0.08) TCGA-XF-A9SI-01 16 19126994 19126994 C T ITPRIPL2 Missense_Mutation p.S404L 0.13 deleterious(0) probably_damaging(0.966) TCGA-XF-A9SI-01 16 23647110 23647110 G C PALB2 Missense_Mutation p.L253V 0.06 tolerated(1) benign(0.004) TCGA-XF-A9SI-01 16 249118 249118 G A LUC7L Silent p.F210F 0.10 TCGA-XF-A9SI-01 16 2510979 2510979 C G C16orf59 Missense_Mutation p.S120C 0.08 deleterious(0.02) possibly_damaging(0.789) TCGA-XF-A9SI-01 16 2510980 2510980 C T C16orf59 Silent p.S120S 0.08 TCGA-XF-A9SI-01 16 2813321 2813321 C T SRRM2 Missense_Mutation p.S931F 0.07 unknown(0) TCGA-XF-A9SI-01 16 3640901 3640901 C G SLX4 Missense_Mutation p.R913T 0.08 tolerated(0.11) benign(0.118) TCGA-XF-A9SI-01 16 47163190 47163190 C T NETO2 Silent p.S59S 0.05 TCGA-XF-A9SI-01 16 48130676 48130676 G A ABCC12 Missense_Mutation p.S1059L 0.09 deleterious(0.04) benign(0.033) TCGA-XF-A9SI-01 16 48396342 48396342 C T SIAH1 Splice_Site p.X31_splice 0.12 TCGA-XF-A9SI-01 16 72163009 72163009 C T PMFBP1 Missense_Mutation p.E636K 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SI-01 16 846969 846969 G A CHTF18 Silent p.G870G 0.05 TCGA-XF-A9SI-01 16 90126873 90126873 G C PRDM7 Missense_Mutation p.S370C 0.07 deleterious(0.02) possibly_damaging(0.7) TCGA-XF-A9SI-01 17 16001793 16001793 G C NCOR1 Nonsense_Mutation p.S903* 0.08 TCGA-XF-A9SI-01 17 16042472 16042472 G C NCOR1 Missense_Mutation p.S401C 0.07 probably_damaging(0.996) TCGA-XF-A9SI-01 17 26970249 26970249 G T KIAA0100 Missense_Mutation p.S110Y 0.14 deleterious(0.03) possibly_damaging(0.544) TCGA-XF-A9SI-01 17 29311734 29311734 C T RNF135 Silent p.L158L 0.11 TCGA-XF-A9SI-01 17 29311738 29311738 C T RNF135 Missense_Mutation p.S159L 0.10 tolerated(0.31) benign(0.001) TCGA-XF-A9SI-01 17 30205746 30205746 G C UTP6 Nonsense_Mutation p.S341* 0.10 TCGA-XF-A9SI-01 17 33749549 33749549 G C SLFN12 Missense_Mutation p.P167A 0.06 tolerated(1) benign(0) TCGA-XF-A9SI-01 17 37880261 37880261 G C ERBB2 Missense_Mutation p.D769H 0.10 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 17 39914675 39914675 G A JUP Silent p.L583L 0.19 TCGA-XF-A9SI-01 17 43531435 43531435 C G PLEKHM1 Missense_Mutation p.E595Q 0.09 deleterious(0.02) benign(0.156) TCGA-XF-A9SI-01 17 4540439 4540439 C G ALOX15 Missense_Mutation p.D308H 0.05 deleterious(0.05) probably_damaging(0.97) TCGA-XF-A9SI-01 17 61607519 61607519 C T KCNH6 Silent p.F125F 0.10 TCGA-XF-A9SI-01 17 62748033 62748033 C G hsa-mir-6080 RNA 0.08 TCGA-XF-A9SI-01 17 7133196 7133196 G C DVL2 Missense_Mutation p.S196C 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-XF-A9SI-01 17 73206028 73206028 C G NUP85 Missense_Mutation p.L80V 0.11 tolerated(1) benign(0.003) TCGA-XF-A9SI-01 17 7462455 7462455 G A TNFSF13 Silent p.L33L 0.12 TCGA-XF-A9SI-01 17 7481193 7481193 C A EIF4A1 Missense_Mutation p.R319S 0.07 deleterious(0) possibly_damaging(0.772) TCGA-XF-A9SI-01 17 7578423 7578423 C T TP53 Missense_Mutation p.M169I 0.20 tolerated(0.12) benign(0.056) TCGA-XF-A9SI-01 17 80400394 80400394 G A HEXDC Missense_Mutation p.E562K 0.06 deleterious_low_confidence(0.02) benign(0.011) TCGA-XF-A9SI-01 18 25727643 25727643 G A CDH2 Missense_Mutation p.L56F 0.11 tolerated(0.71) benign(0.007) TCGA-XF-A9SI-01 18 2775823 2775823 C T SMCHD1 Missense_Mutation p.T1756I 0.19 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SI-01 18 34324067 34324067 C G FHOD3 Missense_Mutation p.L1143V 0.09 deleterious(0.03) probably_damaging(0.95) TCGA-XF-A9SI-01 18 43514860 43514860 G C EPG5 Missense_Mutation p.F724L 0.10 tolerated(0.46) benign(0.001) TCGA-XF-A9SI-01 18 50923681 50923681 G C DCC Missense_Mutation p.E898Q 0.08 deleterious(0.03) benign(0.103) TCGA-XF-A9SI-01 18 53070731 53070731 G T TCF4 Nonsense_Mutation p.S210* 0.07 TCGA-XF-A9SI-01 18 55273854 55273854 G A NARS Silent p.L377L 0.04 TCGA-XF-A9SI-01 18 67345032 67345032 G C DOK6 Missense_Mutation p.D118H 0.07 deleterious(0.04) benign(0.433) TCGA-XF-A9SI-01 18 756604 756604 G C YES1 Missense_Mutation p.S75C 0.08 deleterious(0.01) possibly_damaging(0.507) TCGA-XF-A9SI-01 19 11616965 11616965 C G ECSIT 3'UTR 0.09 TCGA-XF-A9SI-01 19 12429946 12429946 C G ZNF563 Missense_Mutation p.R298T 0.06 tolerated(0.73) benign(0.309) TCGA-XF-A9SI-01 19 12792434 12792434 G A DHPS Silent p.F49F 0.09 TCGA-XF-A9SI-01 19 12940802 12940802 G C RTBDN Missense_Mutation p.Q30E 0.14 deleterious_low_confidence(0.03) benign(0.033) TCGA-XF-A9SI-01 19 13260352 13260352 C T STX10 Silent p.E87E 0.11 TCGA-XF-A9SI-01 19 13941453 13941453 C T ZSWIM4 Silent p.L853L 0.07 TCGA-XF-A9SI-01 19 17394517 17394517 C T ANKLE1 Missense_Mutation p.S315F 0.05 deleterious(0.04) benign(0.298) TCGA-XF-A9SI-01 19 22154616 22154616 C T ZNF208 Missense_Mutation p.E1074K 0.05 tolerated(0.97) benign(0.001) TCGA-XF-A9SI-01 19 3118977 3118977 G C GNA11 Missense_Mutation p.E221Q 0.06 deleterious(0.02) benign(0.109) TCGA-XF-A9SI-01 19 34710384 34710384 G A LSM14A Missense_Mutation p.M290I 0.10 tolerated(0.46) possibly_damaging(0.461) TCGA-XF-A9SI-01 19 34710391 34710391 G C LSM14A Missense_Mutation p.E293Q 0.06 deleterious(0) probably_damaging(0.967) TCGA-XF-A9SI-01 19 38190188 38190188 C T ZNF607 Missense_Mutation p.E282K 0.08 tolerated(0.45) benign(0.011) TCGA-XF-A9SI-01 19 41903134 41903134 C T EXOSC5 Missense_Mutation p.E34K 0.22 deleterious(0.05) probably_damaging(0.981) TCGA-XF-A9SI-01 19 41916676 41916676 C G BCKDHA Silent p.V81V 0.14 TCGA-XF-A9SI-01 19 42793358 42793358 C G CIC Missense_Mutation p.S387C 0.05 benign(0.161) TCGA-XF-A9SI-01 19 42794493 42794493 G T CIC Missense_Mutation p.G525C 0.19 benign(0.308) TCGA-XF-A9SI-01 19 42794494 42794494 G T CIC Missense_Mutation p.G525V 0.19 benign(0.066) TCGA-XF-A9SI-01 19 44500873 44500873 C G ZNF155 Missense_Mutation p.F299L 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-XF-A9SI-01 19 44501497 44501497 G C ZNF155 Missense_Mutation p.R507S 0.06 tolerated(1) benign(0.01) TCGA-XF-A9SI-01 19 4683570 4683570 C G DPP9 Silent p.L750L 0.06 TCGA-XF-A9SI-01 19 48229104 48229104 G C EHD2 Missense_Mutation p.E180Q 0.08 tolerated(0.07) possibly_damaging(0.517) TCGA-XF-A9SI-01 19 48525511 48525511 G A ELSPBP1 Missense_Mutation p.G200E 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 19 4859626 4859626 G A PLIN3 Silent p.P108P 0.16 TCGA-XF-A9SI-01 19 4929329 4929329 C G MIR4747 5'Flank 0.17 TCGA-XF-A9SI-01 19 49657507 49657507 C T HRC Missense_Mutation p.E330K 0.11 deleterious(0) probably_damaging(0.935) TCGA-XF-A9SI-01 19 50461939 50461939 G A SIGLEC11 Silent p.L442L 0.06 TCGA-XF-A9SI-01 19 52468875 52468875 G C ZNF350 Silent p.L277L 0.16 TCGA-XF-A9SI-01 19 53269801 53269801 C G ZNF600 Missense_Mutation p.R403T 0.16 tolerated(0.6) benign(0.078) TCGA-XF-A9SI-01 19 53270030 53270030 C G ZNF600 Missense_Mutation p.E327Q 0.13 tolerated(0.06) possibly_damaging(0.902) TCGA-XF-A9SI-01 19 53304919 53304919 G C ZNF28 Nonsense_Mutation p.S60* 0.05 TCGA-XF-A9SI-01 19 58453776 58453776 G T ZNF256 Missense_Mutation p.H134N 0.06 deleterious(0.02) benign(0.156) TCGA-XF-A9SI-01 19 58491487 58491487 G C ZNF606 Missense_Mutation p.H187Q 0.06 tolerated(1) benign(0.004) TCGA-XF-A9SI-01 19 58806546 58806546 G A ZNF8 Missense_Mutation p.E458K 0.08 tolerated(0.06) benign(0.03) TCGA-XF-A9SI-01 19 59028839 59028839 C A ZBTB45 Nonsense_Mutation p.E68* 0.11 TCGA-XF-A9SI-01 19 7807988 7807988 G A CD209 Silent p.C384C 0.14 TCGA-XF-A9SI-01 19 9049262 9049262 G C MUC16 Nonsense_Mutation p.S10790* 0.07 TCGA-XF-A9SI-01 19 9057644 9057644 G T MUC16 Silent p.I9934I 0.07 TCGA-XF-A9SI-01 19 9407433 9407433 G A ZNF699 Missense_Mutation p.S216F 0.11 deleterious(0.05) probably_damaging(0.972) TCGA-XF-A9SI-01 1 114414313 114414313 G A PTPN22 5'UTR 0.19 TCGA-XF-A9SI-01 1 11574558 11574558 G A PTCHD2 Silent p.L476L 0.08 TCGA-XF-A9SI-01 1 12887380 12887380 C T PRAMEF11 Silent p.L159L 0.07 TCGA-XF-A9SI-01 1 144931345 144931345 C A PDE4DIP Intron 0.04 TCGA-XF-A9SI-01 1 150923439 150923439 G A SETDB1 Missense_Mutation p.E696K 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-XF-A9SI-01 1 151108930 151108930 G A SEMA6C Missense_Mutation p.S367L 0.05 deleterious(0.01) possibly_damaging(0.504) TCGA-XF-A9SI-01 1 153580093 153580093 C T S100A16 Missense_Mutation p.D77N 0.07 tolerated(0.62) possibly_damaging(0.613) TCGA-XF-A9SI-01 1 153747799 153747799 C T SLC27A3 5'UTR 0.18 TCGA-XF-A9SI-01 1 156256095 156256095 C T TMEM79 Missense_Mutation p.R268W 0.16 deleterious(0) possibly_damaging(0.832) TCGA-XF-A9SI-01 1 157740421 157740421 C T FCRL2 Missense_Mutation p.E30K 0.09 deleterious(0) probably_damaging(0.969) TCGA-XF-A9SI-01 1 159557935 159557935 G C APCS Missense_Mutation p.D37H 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-XF-A9SI-01 1 160145904 160145904 G A ATP1A4 Silent p.L778L 0.38 TCGA-XF-A9SI-01 1 161018713 161018713 C G ARHGAP30 Missense_Mutation p.E700Q 0.03 deleterious_low_confidence(0.05) benign(0.011) TCGA-XF-A9SI-01 1 169351465 169351465 G C BLZF1 Missense_Mutation p.K321N 0.12 tolerated(0.13) benign(0.006) TCGA-XF-A9SI-01 1 169702791 169702791 G C SELE 5'UTR 0.05 TCGA-XF-A9SI-01 1 176863943 176863943 C T ASTN1 Missense_Mutation p.E899K 0.06 tolerated(0.14) benign(0.01) TCGA-XF-A9SI-01 1 179078333 179078333 G A ABL2 Missense_Mutation p.S690L 0.15 tolerated_low_confidence(0.1) benign(0.424) TCGA-XF-A9SI-01 1 184863263 184863263 C T FAM129A Silent p.E88E 0.11 TCGA-XF-A9SI-01 1 186057884 186057884 C G HMCN1 Missense_Mutation p.Q3242E 0.12 benign(0.078) TCGA-XF-A9SI-01 1 19444453 19444453 C A UBR4 Intron 0.14 TCGA-XF-A9SI-01 1 197030934 197030934 G A F13B Missense_Mutation p.P144L 0.07 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SI-01 1 200954022 200954022 G T KIF21B Silent p.L1256L 0.06 TCGA-XF-A9SI-01 1 202700985 202700985 G C KDM5B Nonsense_Mutation p.S1331* 0.07 TCGA-XF-A9SI-01 1 207696956 207696956 G A CR1 Missense_Mutation p.R163K 0.19 tolerated(1) benign(0.006) TCGA-XF-A9SI-01 1 209773397 209773397 C G CAMK1G Missense_Mutation p.I54M 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9SI-01 1 211842593 211842593 G C NEK2 Missense_Mutation p.L283V 0.14 tolerated(0.65) benign(0.001) TCGA-XF-A9SI-01 1 2121162 2121162 C T C1orf86 Missense_Mutation p.D177N 0.12 tolerated(0.06) benign(0) TCGA-XF-A9SI-01 1 2121165 2121165 C T C1orf86 Missense_Mutation p.E176K 0.12 deleterious(0.05) benign(0.012) TCGA-XF-A9SI-01 1 214795555 214795555 G A CENPF Silent p.E333E 0.11 TCGA-XF-A9SI-01 1 215953284 215953284 C G USH2A Missense_Mutation p.E3614Q 0.09 benign(0.099) TCGA-XF-A9SI-01 1 215990420 215990420 C G USH2A Missense_Mutation p.Q3163H 0.05 benign(0) TCGA-XF-A9SI-01 1 220777450 220777450 G C MARK1 Missense_Mutation p.E156Q 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 1 222801121 222801121 G C MIA3 Missense_Mutation p.E187Q 0.11 tolerated(0.06) possibly_damaging(0.846) TCGA-XF-A9SI-01 1 228879212 228879212 G C RHOU Missense_Mutation p.D168H 0.13 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SI-01 1 231700378 231700378 G C TSNAX Silent p.R200R 0.06 TCGA-XF-A9SI-01 1 3390034 3390034 C T ARHGEF16 Missense_Mutation p.S418F 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 1 34191068 34191068 G A CSMD2 Silent p.I819I 0.11 TCGA-XF-A9SI-01 1 34383868 34383868 C G CSMD2 Missense_Mutation p.Q209H 0.24 tolerated(0.15) possibly_damaging(0.903) TCGA-XF-A9SI-01 1 47717303 47717303 C T STIL Missense_Mutation p.M1124I 0.08 deleterious(0) benign(0.416) TCGA-XF-A9SI-01 1 54670833 54670833 C A MRPL37 Silent p.L163L 0.11 TCGA-XF-A9SI-01 1 77883386 77883386 G A AK5 Missense_Mutation p.D349N 0.12 tolerated(0.4) benign(0.004) TCGA-XF-A9SI-01 20 1616046 1616046 C T SIRPG Silent p.V316V 0.05 TCGA-XF-A9SI-01 20 2381025 2381025 G C TGM6 Silent p.L308L 0.11 TCGA-XF-A9SI-01 20 30193247 30193247 G A ID1 Silent p.L19L 0.19 TCGA-XF-A9SI-01 20 33163013 33163013 G A PIGU Silent p.I363I 0.21 TCGA-XF-A9SI-01 20 39990603 39990603 C G EMILIN3 Missense_Mutation p.E536Q 0.12 tolerated(0.07) probably_damaging(0.983) TCGA-XF-A9SI-01 20 40053968 40053968 C G CHD6 Missense_Mutation p.R1399T 0.10 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 20 43560915 43560915 G A PABPC1L Intron 0.25 TCGA-XF-A9SI-01 20 47990847 47990847 G C KCNB1 Missense_Mutation p.S417C 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 20 48472032 48472032 C T SLC9A8 Silent p.F225F 0.18 TCGA-XF-A9SI-01 20 56918835 56918835 G A RAB22A Missense_Mutation p.D60N 0.16 deleterious(0.02) possibly_damaging(0.901) TCGA-XF-A9SI-01 20 6088238 6088238 C G FERMT1 Missense_Mutation p.E264Q 0.05 deleterious(0.01) probably_damaging(0.952) TCGA-XF-A9SI-01 20 62626426 62626426 C T PRPF6 Missense_Mutation p.S199L 0.13 deleterious(0.02) benign(0.054) TCGA-XF-A9SI-01 21 31803058 31803058 C G KRTAP13-4 Missense_Mutation p.F155L 0.05 tolerated(0.13) probably_damaging(0.924) TCGA-XF-A9SI-01 21 37617893 37617893 C T DOPEY2 Silent p.L1205L 0.13 TCGA-XF-A9SI-01 21 37618536 37618536 G A DOPEY2 Missense_Mutation p.E1420K 0.09 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 22 24123043 24123043 C T MMP11 Intron 0.33 TCGA-XF-A9SI-01 22 29706489 29706489 G C GAS2L1 Missense_Mutation p.E232Q 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9SI-01 22 29706860 29706860 G C GAS2L1 Missense_Mutation p.Q294H 0.13 tolerated(0.06) possibly_damaging(0.553) TCGA-XF-A9SI-01 22 29707859 29707859 G A GAS2L1 3'UTR 0.20 TCGA-XF-A9SI-01 22 29708037 29708037 G A GAS2L1 3'UTR 0.13 TCGA-XF-A9SI-01 22 29708058 29708058 C A GAS2L1 3'UTR 0.11 TCGA-XF-A9SI-01 22 29708184 29708184 G A GAS2L1 3'Flank 0.11 TCGA-XF-A9SI-01 22 29709741 29709741 G A RASL10A Intron 0.17 TCGA-XF-A9SI-01 22 30050694 30050694 G C NF2 Missense_Mutation p.E166Q 0.06 deleterious(0.02) benign(0.25) TCGA-XF-A9SI-01 22 31822619 31822619 C G DRG1 Missense_Mutation p.I244M 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-XF-A9SI-01 22 32874970 32874970 C T FBXO7 Missense_Mutation p.S42F 0.06 deleterious(0) possibly_damaging(0.798) TCGA-XF-A9SI-01 22 38610522 38610522 C G MAFF Silent p.L44L 0.23 TCGA-XF-A9SI-01 22 39917628 39917628 G A ATF4 Missense_Mutation p.E60K 0.06 tolerated(0.1) benign(0.168) TCGA-XF-A9SI-01 22 41223114 41223114 G A ST13 Missense_Mutation p.L323F 0.06 deleterious(0.01) possibly_damaging(0.859) TCGA-XF-A9SI-01 22 41551076 41551076 C T EP300 Missense_Mutation p.P1074S 0.05 probably_damaging(0.999) TCGA-XF-A9SI-01 22 41556657 41556657 G T EP300 Missense_Mutation p.C1201F 0.10 probably_damaging(0.989) TCGA-XF-A9SI-01 22 42177789 42177789 C G MEI1 Silent p.L1009L 0.12 TCGA-XF-A9SI-01 22 42606329 42606329 C T TCF20 Silent p.V1661V 0.08 TCGA-XF-A9SI-01 2 101620654 101620654 G C RPL31 Missense_Mutation p.E48Q 0.07 deleterious(0.01) possibly_damaging(0.822) TCGA-XF-A9SI-01 2 103148829 103148829 C T SLC9A4 Silent p.F693F 0.09 TCGA-XF-A9SI-01 2 109104177 109104177 C T GCC2 Missense_Mutation p.S1318F 0.06 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SI-01 2 120194998 120194998 C T TMEM37 Silent p.I185I 0.06 TCGA-XF-A9SI-01 2 128934439 128934439 C A UGGT1 Silent p.L1197L 0.11 TCGA-XF-A9SI-01 2 130898770 130898770 C T CCDC74B Missense_Mutation p.S215N 0.04 tolerated(0.18) possibly_damaging(0.744) TCGA-XF-A9SI-01 2 138758531 138758531 C T HNMT Silent p.Y78Y 0.11 TCGA-XF-A9SI-01 2 152322420 152322420 C G RIF1 Missense_Mutation p.S2129C 0.07 deleterious(0.02) possibly_damaging(0.687) TCGA-XF-A9SI-01 2 152418632 152418632 G A NEB Nonsense_Mutation p.Q6330* 0.04 TCGA-XF-A9SI-01 2 160242971 160242971 G C BAZ2B Missense_Mutation p.Q1122E 0.06 probably_damaging(0.996) TCGA-XF-A9SI-01 2 176981505 176981505 C T HOXD10 5'UTR 0.08 TCGA-XF-A9SI-01 2 17907701 17907701 C T SMC6 Missense_Mutation p.M193I 0.10 deleterious(0.04) benign(0.326) TCGA-XF-A9SI-01 2 179404286 179404286 G T TTN Silent p.R32836R 0.04 TCGA-XF-A9SI-01 2 179431833 179431833 C T TTN Silent p.V26342V 0.07 TCGA-XF-A9SI-01 2 180835422 180835422 G C CWC22 Missense_Mutation p.H368D 0.20 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SI-01 2 18113533 18113533 G A KCNS3 Missense_Mutation p.D420N 0.12 deleterious(0.04) possibly_damaging(0.811) TCGA-XF-A9SI-01 2 182780010 182780010 C T SSFA2 Missense_Mutation p.S548L 0.08 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 2 200137114 200137114 C T SATB2 Silent p.G674G 0.09 TCGA-XF-A9SI-01 2 20838284 20838284 C G HS1BP3 Missense_Mutation p.E179Q 0.09 tolerated(0.54) possibly_damaging(0.719) TCGA-XF-A9SI-01 2 20886567 20886567 C G C2orf43 3'UTR 0.15 TCGA-XF-A9SI-01 2 209168953 209168953 G A PIKFYVE Missense_Mutation p.G460E 0.08 tolerated(0.25) possibly_damaging(0.831) TCGA-XF-A9SI-01 2 209190863 209190863 C G PIKFYVE Missense_Mutation p.L1110V 0.06 tolerated(0.3) benign(0.045) TCGA-XF-A9SI-01 2 21225180 21225180 G C APOB Missense_Mutation p.Q4372E 0.06 benign(0.003) TCGA-XF-A9SI-01 2 219507465 219507465 G T ZNF142 Missense_Mutation p.F1258L 0.09 tolerated(0.07) benign(0.153) TCGA-XF-A9SI-01 2 220034556 220034556 G T SLC23A3 Missense_Mutation p.L51M 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 2 238249642 238249642 C G COL6A3 Missense_Mutation p.K2639N 0.06 unknown(0) TCGA-XF-A9SI-01 2 25141678 25141678 T A ADCY3 Missense_Mutation p.E60V 0.11 deleterious(0.03) benign(0.06) TCGA-XF-A9SI-01 2 27447627 27447627 G T CAD Silent p.L423L 0.04 TCGA-XF-A9SI-01 2 27462221 27462221 C T CAD Missense_Mutation p.T1759I 0.07 tolerated(0.34) benign(0.002) TCGA-XF-A9SI-01 2 28561342 28561342 C T BRE 3'UTR 0.04 TCGA-XF-A9SI-01 2 32312605 32312605 G A SPAST Missense_Mutation p.E154K 0.12 tolerated(0.64) possibly_damaging(0.634) TCGA-XF-A9SI-01 2 37028525 37028525 G C VIT Missense_Mutation p.Q380H 0.07 tolerated(0.48) benign(0.047) TCGA-XF-A9SI-01 2 71650691 71650691 G A ZNF638 Missense_Mutation p.M1349I 0.08 tolerated(0.46) benign(0) TCGA-XF-A9SI-01 2 73466824 73466824 C T CCT7 Silent p.P20P 0.11 TCGA-XF-A9SI-01 2 73470171 73470171 G C CCT7 Missense_Mutation p.E103Q 0.06 deleterious(0.04) possibly_damaging(0.572) TCGA-XF-A9SI-01 2 85533377 85533377 G A TCF7L1 Silent p.V346V 0.13 TCGA-XF-A9SI-01 2 86691332 86691332 C G KDM3A Missense_Mutation p.P334A 0.07 tolerated_low_confidence(0.08) benign(0.16) TCGA-XF-A9SI-01 2 88825923 88825923 G C TEX37 Missense_Mutation p.D10H 0.08 tolerated_low_confidence(0.1) benign(0.102) TCGA-XF-A9SI-01 2 89265822 89265822 C G IGKV1-6 Missense_Mutation p.D104H 0.07 deleterious(0) probably_damaging(0.986) TCGA-XF-A9SI-01 2 96852603 96852603 C T STARD7 Silent p.K326K 0.11 TCGA-XF-A9SI-01 3 10116277 10116277 G C FANCD2 Missense_Mutation p.E927Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 3 10119795 10119795 G A FANCD2 Missense_Mutation p.E964K 0.12 deleterious(0.01) probably_damaging(0.933) TCGA-XF-A9SI-01 3 101284332 101284332 G T TRMT10C Missense_Mutation p.R236I 0.10 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SI-01 3 113376452 113376452 C T KIAA2018 Silent p.L1359L 0.06 TCGA-XF-A9SI-01 3 137956210 137956210 G A ARMC8 Silent p.S209S 0.06 TCGA-XF-A9SI-01 3 141917776 141917776 C G GK5 Splice_Site p.X138_splice 0.19 TCGA-XF-A9SI-01 3 14209824 14209824 G C XPC Missense_Mutation p.L157V 0.11 tolerated(1) benign(0) TCGA-XF-A9SI-01 3 142231206 142231206 G C ATR Missense_Mutation p.S1583C 0.05 deleterious(0) probably_damaging(0.911) TCGA-XF-A9SI-01 3 148877856 148877856 G C HPS3 Missense_Mutation p.Q632H 0.09 tolerated(0.1) benign(0.371) TCGA-XF-A9SI-01 3 150460159 150460159 G A SIAH2 Silent p.I248I 0.14 TCGA-XF-A9SI-01 3 154878220 154878220 C T MME Missense_Mutation p.S548L 0.06 deleterious(0) benign(0.028) TCGA-XF-A9SI-01 3 15643021 15643021 C T HACL1 5'UTR 0.21 TCGA-XF-A9SI-01 3 165503970 165503970 G C BCHE Missense_Mutation p.F549L 0.16 tolerated(0.2) possibly_damaging(0.874) TCGA-XF-A9SI-01 3 183855953 183855953 G A EIF2B5 Splice_Site p.X229_splice 0.14 TCGA-XF-A9SI-01 3 183858361 183858361 G C EIF2B5 Missense_Mutation p.Q333H 0.18 tolerated(0.16) benign(0.005) TCGA-XF-A9SI-01 3 184019819 184019819 G A PSMD2 Missense_Mutation p.D222N 0.19 deleterious(0) probably_damaging(0.947) TCGA-XF-A9SI-01 3 184093698 184093698 G C THPO Missense_Mutation p.S40C 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-XF-A9SI-01 3 186435287 186435287 C G KNG1 5'UTR 0.20 TCGA-XF-A9SI-01 3 186508035 186508035 C G RFC4 Missense_Mutation p.D298H 0.15 tolerated(0.55) benign(0.005) TCGA-XF-A9SI-01 3 192125827 192125827 C T FGF12 Silent p.V62V 0.11 TCGA-XF-A9SI-01 3 39176631 39176631 C G TTC21A Missense_Mutation p.I977M 0.06 tolerated(0.08) probably_damaging(0.961) TCGA-XF-A9SI-01 3 42678764 42678764 C T NKTR Missense_Mutation p.S523F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9SI-01 3 44684965 44684965 G C ZNF197 Missense_Mutation p.K781N 0.14 deleterious(0.02) possibly_damaging(0.602) TCGA-XF-A9SI-01 3 44700636 44700636 C G ZNF35 Missense_Mutation p.Q261E 0.14 deleterious(0) possibly_damaging(0.746) TCGA-XF-A9SI-01 3 49713347 49713347 C G APEH Silent p.L130L 0.08 TCGA-XF-A9SI-01 3 50293654 50293654 G A GNAI2 Silent p.Q165Q 0.13 TCGA-XF-A9SI-01 3 50294270 50294270 G C GNAI2 Missense_Mutation p.E237Q 0.11 deleterious(0) possibly_damaging(0.74) TCGA-XF-A9SI-01 3 58302671 58302671 C G RPP14 Missense_Mutation p.T90S 0.08 tolerated(0.13) possibly_damaging(0.829) TCGA-XF-A9SI-01 3 98188847 98188847 C T OR5K1 Nonsense_Mutation p.Q143* 0.05 TCGA-XF-A9SI-01 4 119204150 119204150 C T PRSS12 Missense_Mutation p.R719Q 0.12 tolerated(0.07) benign(0.023) TCGA-XF-A9SI-01 4 159790162 159790162 G C FNIP2 Missense_Mutation p.D792H 0.08 deleterious(0.03) possibly_damaging(0.834) TCGA-XF-A9SI-01 4 2940962 2940962 C G NOP14 Missense_Mutation p.K809N 0.11 deleterious(0) probably_damaging(0.949) TCGA-XF-A9SI-01 4 4304292 4304292 C T ZBTB49 Silent p.F243F 0.12 TCGA-XF-A9SI-01 4 629747 629747 C T PDE6B Missense_Mutation p.R234C 0.10 deleterious(0) probably_damaging(0.953) TCGA-XF-A9SI-01 4 80328674 80328674 C T GK2 Missense_Mutation p.M227I 0.16 tolerated(0.17) benign(0.049) TCGA-XF-A9SI-01 4 82380647 82380647 G A RASGEF1B Missense_Mutation p.P6S 0.07 tolerated(0.83) benign(0.005) TCGA-XF-A9SI-01 4 85724606 85724606 G A WDFY3 Missense_Mutation p.S815F 0.09 tolerated(0.17) benign(0.212) TCGA-XF-A9SI-01 4 99806094 99806094 C G EIF4E Missense_Mutation p.R204T 0.12 deleterious(0.05) benign(0.015) TCGA-XF-A9SI-01 5 131915111 131915111 C G RAD50 Missense_Mutation p.F156L 0.05 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 5 131995944 131995944 G A IL13 Silent p.K137K 0.10 TCGA-XF-A9SI-01 5 1406378 1406378 G A SLC6A3 Silent p.I508I 0.08 TCGA-XF-A9SI-01 5 147516602 147516602 G A SPINK5 3'UTR 0.10 TCGA-XF-A9SI-01 5 16451769 16451769 G C ZNF622 Missense_Mutation p.F477L 0.06 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SI-01 5 172590944 172590944 C T BNIP1 3'UTR 0.11 TCGA-XF-A9SI-01 5 172744988 172744988 A T STC2 Silent p.G257G 0.06 TCGA-XF-A9SI-01 5 176684035 176684035 G A NSD1 Missense_Mutation p.E1617K 0.11 deleterious(0.03) benign(0.129) TCGA-XF-A9SI-01 5 179306625 179306625 C T TBC1D9B Intron 0.09 TCGA-XF-A9SI-01 5 179743976 179743976 A G GFPT2 Silent p.F347F 0.11 TCGA-XF-A9SI-01 5 31983537 31983537 G A PDZD2 Silent p.E251E 0.37 TCGA-XF-A9SI-01 5 31983643 31983643 G C PDZD2 Missense_Mutation p.D287H 0.32 deleterious(0) probably_damaging(0.956) TCGA-XF-A9SI-01 5 34935849 34935849 G T DNAJC21 Missense_Mutation p.G76W 0.30 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SI-01 5 38950600 38950600 C T RICTOR Missense_Mutation p.G1117E 0.06 deleterious(0.02) benign(0.422) TCGA-XF-A9SI-01 5 39377348 39377348 C T DAB2 Nonsense_Mutation p.W514* 0.05 TCGA-XF-A9SI-01 5 40765069 40765069 G A PRKAA1 Missense_Mutation p.H380Y 0.07 tolerated(0.99) benign(0.15) TCGA-XF-A9SI-01 5 40853586 40853586 C G CARD6 Missense_Mutation p.L718V 0.28 tolerated(0.23) benign(0.007) TCGA-XF-A9SI-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.05 tolerated(0.25) benign(0.064) TCGA-XF-A9SI-01 5 56224636 56224636 G A MIER3 Silent p.L293L 0.05 TCGA-XF-A9SI-01 5 66480128 66480128 C G CD180 Missense_Mutation p.Q181H 0.05 tolerated(0.06) benign(0.151) TCGA-XF-A9SI-01 5 914666 914666 G C TRIP13 Missense_Mutation p.L369F 0.25 tolerated(0.42) benign(0.015) TCGA-XF-A9SI-01 6 11201186 11201186 C T NEDD9 Intron 0.09 TCGA-XF-A9SI-01 6 149919369 149919369 G A KATNA1 Nonsense_Mutation p.Q336* 0.07 TCGA-XF-A9SI-01 6 149922735 149922735 C G KATNA1 Missense_Mutation p.E295Q 0.09 deleterious(0.01) possibly_damaging(0.799) TCGA-XF-A9SI-01 6 151209081 151209081 G A MTHFD1L Missense_Mutation p.M248I 0.09 tolerated(0.05) benign(0.01) TCGA-XF-A9SI-01 6 159204617 159204617 C G EZR Missense_Mutation p.K211N 0.06 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SI-01 6 166944802 166944802 C T RPS6KA2 Splice_Site p.X81_splice 0.14 TCGA-XF-A9SI-01 6 22569871 22569871 G A HDGFL1 Missense_Mutation p.A23T 0.13 tolerated(0.07) probably_damaging(0.946) TCGA-XF-A9SI-01 6 29643165 29643165 G C ZFP57 Nonsense_Mutation p.S117* 0.08 TCGA-XF-A9SI-01 6 29693797 29693797 G T HLA-F Missense_Mutation p.R338I 0.06 deleterious_low_confidence(0.03) benign(0.144) TCGA-XF-A9SI-01 6 30529840 30529840 C G PRR3 Silent p.L133L 0.13 TCGA-XF-A9SI-01 6 39847133 39847133 C T DAAM2 Silent p.L575L 0.15 TCGA-XF-A9SI-01 6 45514839 45514839 C G RUNX2 Missense_Mutation p.Q455E 0.11 deleterious(0) probably_damaging(0.991) TCGA-XF-A9SI-01 6 7231430 7231430 C T RREB1 Missense_Mutation p.S1033L 0.11 tolerated(0.24) benign(0.381) TCGA-XF-A9SI-01 6 74497085 74497085 C T CD109 Silent p.I822I 0.08 TCGA-XF-A9SI-01 6 74498226 74498226 C G CD109 Missense_Mutation p.I864M 0.12 tolerated(0.08) benign(0.017) TCGA-XF-A9SI-01 7 103234305 103234305 C G RELN Missense_Mutation p.D1246H 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-XF-A9SI-01 7 117365160 117365160 G C CTTNBP2 Missense_Mutation p.L1403V 0.11 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SI-01 7 122091483 122091483 C G CADPS2 Missense_Mutation p.E745Q 0.09 tolerated(0.69) benign(0.08) TCGA-XF-A9SI-01 7 127240323 127240323 G C FSCN3 Missense_Mutation p.C456S 0.07 tolerated(0.24) benign(0.157) TCGA-XF-A9SI-01 7 130023557 130023557 C T CPA1 Silent p.F206F 0.15 TCGA-XF-A9SI-01 7 130025132 130025132 C G CPA1 Silent p.L311L 0.07 TCGA-XF-A9SI-01 7 134552507 134552507 G C CALD1 Missense_Mutation p.R8T 0.20 deleterious(0.01) unknown(0) TCGA-XF-A9SI-01 7 136848993 136848993 G A hsa-mir-490 Intron 0.09 TCGA-XF-A9SI-01 7 138265335 138265335 G C TRIM24 Missense_Mutation p.D872H 0.10 deleterious(0) probably_damaging(0.937) TCGA-XF-A9SI-01 7 138764451 138764451 G A ZC3HAV1 Silent p.I412I 0.09 TCGA-XF-A9SI-01 7 141352723 141352723 G A AGK Silent p.%3D 0.17 TCGA-XF-A9SI-01 7 141464790 141464790 G A TAS2R3 Missense_Mutation p.A278T 0.11 tolerated(0.33) benign(0.038) TCGA-XF-A9SI-01 7 142658181 142658181 C G KEL Missense_Mutation p.E78D 0.13 tolerated(0.62) benign(0.003) TCGA-XF-A9SI-01 7 148523598 148523598 G A EZH2 Silent p.F285F 0.16 TCGA-XF-A9SI-01 7 154738094 154738094 G C PAXIP1 Missense_Mutation p.Q1059E 0.12 deleterious(0) unknown(0) TCGA-XF-A9SI-01 7 2275143 2275143 G C FTSJ2 Missense_Mutation p.L119V 0.07 tolerated(0.25) benign(0.343) TCGA-XF-A9SI-01 7 35050167 35050167 C T DPY19L1 Missense_Mutation p.G153E 0.12 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SI-01 7 38402745 38402745 C G TRGV2 Missense_Mutation p.R25T 0.12 tolerated(0.73) benign(0.012) TCGA-XF-A9SI-01 7 40723715 40723715 C T SUGCT Missense_Mutation p.L391F 0.07 tolerated(0.05) benign(0.011) TCGA-XF-A9SI-01 7 44104994 44104994 G C PGAM2 Missense_Mutation p.I45M 0.08 deleterious(0.04) possibly_damaging(0.602) TCGA-XF-A9SI-01 7 56088885 56088885 C G PSPH Silent p.L7L 0.09 TCGA-XF-A9SI-01 7 5781290 5781290 C T RNF216 Missense_Mutation p.D120N 0.11 tolerated_low_confidence(0.51) benign(0.001) TCGA-XF-A9SI-01 7 64254910 64254910 C G ZNF138 5'UTR 0.12 TCGA-XF-A9SI-01 7 77379293 77379293 C T RSBN1L Missense_Mutation p.S419L 0.05 deleterious(0.01) possibly_damaging(0.896) TCGA-XF-A9SI-01 7 79828562 79828562 G A GNAI1 Missense_Mutation p.V109M 0.17 tolerated(0.14) benign(0.002) TCGA-XF-A9SI-01 7 81635096 81635096 C A CACNA2D1 Silent p.L500L 0.07 TCGA-XF-A9SI-01 7 82997349 82997349 C G SEMA3E Missense_Mutation p.K627N 0.15 deleterious(0.03) benign(0.016) TCGA-XF-A9SI-01 7 87760718 87760718 C G ADAM22 Missense_Mutation p.I320M 0.05 deleterious(0.04) probably_damaging(0.947) TCGA-XF-A9SI-01 7 99912227 99912227 C T SPDYE3 Missense_Mutation p.S352F 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-XF-A9SI-01 8 100779166 100779166 G C VPS13B Missense_Mutation p.L2430F 0.12 deleterious(0) possibly_damaging(0.86) TCGA-XF-A9SI-01 8 104312279 104312279 G A FZD6 5'UTR 0.13 TCGA-XF-A9SI-01 8 134232965 134232965 G A WISP1 Missense_Mutation p.R164H 0.09 tolerated(0.07) benign(0.117) TCGA-XF-A9SI-01 8 144941916 144941916 C G EPPK1 Missense_Mutation p.E1836Q 0.05 benign(0.008) TCGA-XF-A9SI-01 8 146068076 146068076 C G ZNF7 Silent p.L528L 0.10 TCGA-XF-A9SI-01 8 28384777 28384777 G A FZD3 Missense_Mutation p.R167Q 0.06 tolerated(0.07) probably_damaging(0.946) TCGA-XF-A9SI-01 8 37690567 37690567 C T GPR124 Silent p.S379S 0.08 TCGA-XF-A9SI-01 8 48809834 48809834 G C PRKDC Nonsense_Mutation p.S1162* 0.08 TCGA-XF-A9SI-01 8 57890695 57890695 C T IMPAD1 Missense_Mutation p.R187Q 0.06 tolerated(0.14) possibly_damaging(0.868) TCGA-XF-A9SI-01 8 99019790 99019790 G C MATN2 Missense_Mutation p.E512Q 0.22 tolerated(0.06) possibly_damaging(0.611) TCGA-XF-A9SI-01 9 100616651 100616651 C T FOXE1 Missense_Mutation p.S152L 0.16 deleterious(0.03) benign(0.228) TCGA-XF-A9SI-01 9 100667095 100667095 C G C9orf156 Missense_Mutation p.E416Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 9 107298662 107298662 G C OR13C3 Missense_Mutation p.L145V 0.15 deleterious(0) probably_damaging(0.952) TCGA-XF-A9SI-01 9 107298890 107298890 G C OR13C3 Missense_Mutation p.L69V 0.10 deleterious(0.05) benign(0.085) TCGA-XF-A9SI-01 9 107367267 107367267 G C OR13C2 Missense_Mutation p.I214M 0.08 deleterious(0) possibly_damaging(0.724) TCGA-XF-A9SI-01 9 130688174 130688174 G T PIP5KL1 Silent p.L245L 0.07 TCGA-XF-A9SI-01 9 132394987 132394987 C T NTMT1 Missense_Mutation p.T2M 0.11 deleterious(0) possibly_damaging(0.847) TCGA-XF-A9SI-01 9 140437934 140437934 C T PNPLA7 Silent p.V152V 0.13 TCGA-XF-A9SI-01 9 21201763 21201763 C G IFNA7 Silent p.L134L 0.06 TCGA-XF-A9SI-01 9 21227648 21227648 G C IFNA17 Silent p.L175L 0.07 TCGA-XF-A9SI-01 9 22029510 22029510 C T CDKN2B-AS1 RNA 0.11 TCGA-XF-A9SI-01 9 3224939 3224939 G C RFX3 3'UTR 0.07 TCGA-XF-A9SI-01 9 34306377 34306377 C T KIF24 Missense_Mutation p.R229Q 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 9 35065378 35065378 C G VCP Missense_Mutation p.G149A 0.21 deleterious(0) benign(0.223) TCGA-XF-A9SI-01 9 36211652 36211652 G A CLTA Missense_Mutation p.E210K 0.16 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SI-01 X 100086621 100086621 C AT CSTF2 Frame_Shift_Ins p.S336Yfs*9 0.08 TCGA-XF-A9SI-01 X 100611193 100611193 G A BTK Silent p.F471F 0.07 TCGA-XF-A9SI-01 X 106871963 106871963 C T PRPS1 Silent p.F35F 0.11 TCGA-XF-A9SI-01 X 123217380 123217380 C T STAG2 Nonsense_Mutation p.R1012* 0.08 TCGA-XF-A9SI-01 X 129055585 129055585 G A UTP14A Intron 0.14 TCGA-XF-A9SI-01 X 129147377 129147377 C A BCORL1 Nonsense_Mutation p.S210* 0.07 TCGA-XF-A9SI-01 X 129148343 129148343 C G BCORL1 Missense_Mutation p.S532C 0.11 probably_damaging(0.969) TCGA-XF-A9SI-01 X 129148344 129148344 C T BCORL1 Silent p.S532S 0.11 TCGA-XF-A9SI-01 X 129148472 129148472 C T BCORL1 Missense_Mutation p.S575L 0.11 benign(0.114) TCGA-XF-A9SI-01 X 129148878 129148878 C G BCORL1 Missense_Mutation p.I710M 0.09 probably_damaging(0.999) TCGA-XF-A9SI-01 X 129149269 129149269 C T BCORL1 Silent p.L841L 0.09 TCGA-XF-A9SI-01 X 129149514 129149514 C T BCORL1 Silent p.V922V 0.12 TCGA-XF-A9SI-01 X 129203380 129203380 G A ELF4 Missense_Mutation p.S361F 0.05 deleterious(0.02) possibly_damaging(0.863) TCGA-XF-A9SI-01 X 129483254 129483254 C A SLC25A14 Nonsense_Mutation p.S116* 0.05 TCGA-XF-A9SI-01 X 135751656 135751656 G C ARHGEF6 Silent p.V725V 0.06 TCGA-XF-A9SI-01 X 13726930 13726930 C G RAB9A Nonsense_Mutation p.S22* 0.06 TCGA-XF-A9SI-01 X 140985109 140985109 C T MAGEC3 Missense_Mutation p.S522F 0.09 tolerated(0.14) benign(0.127) TCGA-XF-A9SI-01 X 14863385 14863385 G C FANCB Nonsense_Mutation p.S507* 0.05 TCGA-XF-A9SI-01 X 151124035 151124035 G A GABRE Silent p.I314I 0.09 TCGA-XF-A9SI-01 X 15526600 15526600 G A BMX Missense_Mutation p.E42K 0.07 deleterious(0) possibly_damaging(0.859) TCGA-XF-A9SI-01 X 23897036 23897036 C T APOO Missense_Mutation p.C78Y 0.06 deleterious(0.04) benign(0.104) TCGA-XF-A9SI-01 X 32490313 32490313 C T DMD Missense_Mutation p.E973K 0.07 benign(0.079) TCGA-XF-A9SI-01 X 37587044 37587044 C G XK Missense_Mutation p.R222G 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A9SI-01 X 39923194 39923194 C T BCOR Missense_Mutation p.E1172K 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-XF-A9SI-01 X 40506725 40506725 C G CXorf38 Missense_Mutation p.K16N 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SI-01 X 41379735 41379735 C T CASK Missense_Mutation p.E902K 0.10 tolerated(0.13) possibly_damaging(0.741) TCGA-XF-A9SI-01 X 47466407 47466407 G T SYN1 Missense_Mutation p.A155D 0.08 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SI-01 X 50123017 50123017 G A DGKK RNA 0.11 TCGA-XF-A9SI-01 X 53674349 53674349 C T HUWE1 Missense_Mutation p.E105K 0.09 probably_damaging(1) TCGA-XF-A9SI-01 X 54037669 54037669 G C PHF8 Missense_Mutation p.L314V 0.18 deleterious(0) probably_damaging(0.946) TCGA-XF-A9SI-01 X 63412011 63412011 C T AMER1 Missense_Mutation p.E386K 0.13 tolerated(0.38) benign(0.428) TCGA-XF-A9SI-01 X 73963137 73963137 C G KIAA2022 Missense_Mutation p.E419Q 0.10 tolerated(0.56) benign(0.002) TCGA-XF-A9SI-01 X 73963864 73963864 C A KIAA2022 Silent p.T176T 0.10 TCGA-XF-A9SJ-01 10 101503815 101503815 T G CUTC Missense_Mutation p.V142G 0.11 deleterious(0.02) benign(0.406) TCGA-XF-A9SJ-01 10 102046364 102046364 C T BLOC1S2 Missense_Mutation p.R18Q 0.21 tolerated(0.21) benign(0.002) TCGA-XF-A9SJ-01 10 13361330 13361330 C T SEPHS1 Missense_Mutation p.E331K 0.17 tolerated(0.06) possibly_damaging(0.523) TCGA-XF-A9SJ-01 10 134161828 134161828 G C LRRC27 Missense_Mutation p.E298D 0.53 tolerated(0.29) benign(0.054) TCGA-XF-A9SJ-01 10 17271444 17271444 C T VIM Missense_Mutation p.S8L 0.21 deleterious(0.02) possibly_damaging(0.488) TCGA-XF-A9SJ-01 10 21462760 21462760 C T NEBL-AS1 5'Flank 0.16 TCGA-XF-A9SJ-01 10 3149487 3149487 G A PFKP Missense_Mutation p.E286K 0.09 deleterious(0.03) benign(0.263) TCGA-XF-A9SJ-01 10 55943323 55943323 C T PCDH15 Missense_Mutation p.E491K 0.11 tolerated(0.8) benign(0.008) TCGA-XF-A9SJ-01 10 75107979 75107979 G A TTC18 Nonsense_Mutation p.Q122* 0.12 TCGA-XF-A9SJ-01 10 75482236 75482236 G C RP11-574K11.28 RNA 0.09 TCGA-XF-A9SJ-01 10 79584175 79584175 G A DLG5 Silent p.S783S 0.35 TCGA-XF-A9SJ-01 11 10328161 10328161 G A ADM Silent p.P177P 0.11 TCGA-XF-A9SJ-01 11 108005920 108005920 G A ACAT1 Missense_Mutation p.G129E 0.05 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SJ-01 11 108043625 108043625 C T NPAT Missense_Mutation p.E696K 0.17 tolerated(0.18) benign(0.023) TCGA-XF-A9SJ-01 11 110007781 110007781 G A ZC3H12C Missense_Mutation p.D139N 0.28 deleterious(0) benign(0.415) TCGA-XF-A9SJ-01 11 118083210 118083210 G A AMICA1 Missense_Mutation p.S37L 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-XF-A9SJ-01 11 118828036 118828036 C A UPK2 Silent p.L109L 0.15 TCGA-XF-A9SJ-01 11 119290911 119290911 G A THY1 Missense_Mutation p.R75C 0.11 deleterious(0) probably_damaging(0.984) TCGA-XF-A9SJ-01 11 12242003 12242003 G A MICAL2 Missense_Mutation p.E402K 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 11 124564318 124564318 T C SPA17 Silent p.N144N 0.13 TCGA-XF-A9SJ-01 11 43702270 43702270 G C HSD17B12 5'UTR 0.12 TCGA-XF-A9SJ-01 11 4843634 4843634 T C OR51F2 Missense_Mutation p.I340T 0.18 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9SJ-01 11 55563500 55563500 G T OR5D14 Missense_Mutation p.G157C 0.10 tolerated(1) benign(0.002) TCGA-XF-A9SJ-01 11 61906366 61906366 G C INCENP Missense_Mutation p.E394Q 0.05 tolerated(0.33) unknown(0) TCGA-XF-A9SJ-01 11 72945909 72945909 C A P2RY2 Silent p.G235G 0.28 TCGA-XF-A9SJ-01 11 76750707 76750707 C A B3GNT6 Silent p.R38R 0.20 TCGA-XF-A9SJ-01 11 82877677 82877677 G A PCF11 Missense_Mutation p.E580K 0.14 tolerated(0.1) benign(0.083) TCGA-XF-A9SJ-01 11 92085327 92085327 T C FAT3 Missense_Mutation p.C17R 0.17 benign(0.001) TCGA-XF-A9SJ-01 11 92532201 92532201 G A FAT3 Missense_Mutation p.G2008R 0.18 probably_damaging(1) TCGA-XF-A9SJ-01 12 109536206 109536206 C G UNG Intron 0.19 TCGA-XF-A9SJ-01 12 11183152 11183152 G A TAS2R31 Silent p.F261F 0.10 TCGA-XF-A9SJ-01 12 117273771 117273771 G A RNFT2 Missense_Mutation p.D347N 0.09 tolerated(0.08) probably_damaging(0.988) TCGA-XF-A9SJ-01 12 122658442 122658442 T C IL31 Silent p.V38V 0.16 TCGA-XF-A9SJ-01 12 123355596 123355596 G A VPS37B Nonsense_Mutation p.Q42* 0.21 TCGA-XF-A9SJ-01 12 13233615 13233615 C T KIAA1467 3'UTR 0.16 TCGA-XF-A9SJ-01 12 30792627 30792627 G A IPO8 Nonsense_Mutation p.R771* 0.12 TCGA-XF-A9SJ-01 12 49237778 49237778 C A DDX23 Missense_Mutation p.D89Y 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-XF-A9SJ-01 12 49444304 49444304 G A KMT2D Nonsense_Mutation p.Q1023* 0.10 TCGA-XF-A9SJ-01 12 50475366 50475366 G C ASIC1 Missense_Mutation p.M553I 0.12 tolerated(0.52) benign(0.009) TCGA-XF-A9SJ-01 12 54333278 54333278 G A HOXC13 Silent p.G196G 0.46 TCGA-XF-A9SJ-01 12 56956280 56956280 G T RBMS2 Missense_Mutation p.G49V 0.15 deleterious(0.01) benign(0.135) TCGA-XF-A9SJ-01 12 58088031 58088031 G C OS9 Silent p.G29G 0.20 TCGA-XF-A9SJ-01 12 66715737 66715737 C T HELB Missense_Mutation p.S722F 0.50 deleterious(0) probably_damaging(0.957) TCGA-XF-A9SJ-01 12 70983837 70983837 C T PTPRB Missense_Mutation p.D653N 0.04 tolerated(0.28) benign(0.005) TCGA-XF-A9SJ-01 12 7470645 7470645 C G ACSM4 Nonsense_Mutation p.S263* 0.09 TCGA-XF-A9SJ-01 12 8078452 8078452 G A SLC2A3 Silent p.F318F 0.07 TCGA-XF-A9SJ-01 12 82750779 82750779 C T CCDC59 Missense_Mutation p.D142N 0.10 tolerated(0.46) benign(0.259) TCGA-XF-A9SJ-01 12 89917975 89917975 C T GALNT4 Missense_Mutation p.D118N 0.16 tolerated(0.05) probably_damaging(0.998) TCGA-XF-A9SJ-01 13 101257221 101257221 C G TMTC4 3'UTR 0.08 TCGA-XF-A9SJ-01 13 111176437 111176437 G A RAB20 Missense_Mutation p.R94W 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 13 113201984 113201984 T C TUBGCP3 Missense_Mutation p.D373G 0.27 deleterious(0) benign(0.098) TCGA-XF-A9SJ-01 13 113897470 113897470 G A CUL4A Silent p.L408L 0.08 TCGA-XF-A9SJ-01 13 28844908 28844908 T C PAN3 Silent p.I621I 0.06 TCGA-XF-A9SJ-01 13 45915202 45915202 C A TPT1 Translation_Start_Site p.M1? 0.73 deleterious(0.05) benign(0.309) TCGA-XF-A9SJ-01 13 49039158 49039158 G T RB1 Nonsense_Mutation p.E746* 0.62 TCGA-XF-A9SJ-01 13 49710506 49710506 G A FNDC3A Missense_Mutation p.E177K 0.22 deleterious(0.04) benign(0.371) TCGA-XF-A9SJ-01 13 52598206 52598206 G A ALG11 Missense_Mutation p.E114K 0.14 tolerated(0.41) benign(0.006) TCGA-XF-A9SJ-01 13 76409469 76409469 G C LMO7 Missense_Mutation p.Q876H 0.37 deleterious(0.01) benign(0.02) TCGA-XF-A9SJ-01 13 79212999 79212999 T C RNF219 Missense_Mutation p.I170V 0.37 tolerated(0.14) possibly_damaging(0.593) TCGA-XF-A9SJ-01 14 102700006 102700006 C G MOK Intron 0.12 TCGA-XF-A9SJ-01 14 105411603 105411603 C T AHNAK2 Silent p.E3395E 0.08 TCGA-XF-A9SJ-01 14 106780590 106780590 C T IGHV4-28 Missense_Mutation p.D92N 0.07 deleterious(0.02) possibly_damaging(0.584) TCGA-XF-A9SJ-01 14 23548108 23548108 G A ACIN1 Missense_Mutation p.S701L 0.10 benign(0.001) TCGA-XF-A9SJ-01 14 24773757 24773757 G A NOP9 Nonsense_Mutation p.W569* 0.11 TCGA-XF-A9SJ-01 14 55408345 55408345 G A WDHD1 Missense_Mutation p.R1085C 0.13 deleterious(0) benign(0.014) TCGA-XF-A9SJ-01 14 60749768 60749768 C T PPM1A Missense_Mutation p.S189L 0.10 tolerated(0.66) benign(0.029) TCGA-XF-A9SJ-01 14 63856332 63856332 G C PPP2R5E Missense_Mutation p.Q358E 0.18 deleterious(0) possibly_damaging(0.465) TCGA-XF-A9SJ-01 14 65041193 65041193 A T PPP1R36 Missense_Mutation p.E185V 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-XF-A9SJ-01 14 70926037 70926037 G A ADAM21 Silent p.V607V 0.09 TCGA-XF-A9SJ-01 14 72055461 72055461 G C SIPA1L1 Missense_Mutation p.G291A 0.34 tolerated(1) probably_damaging(0.968) TCGA-XF-A9SJ-01 14 75470288 75470288 G C EIF2B2 Missense_Mutation p.E107Q 0.06 tolerated(0.1) benign(0.213) TCGA-XF-A9SJ-01 14 88945861 88945861 G A PTPN21 Silent p.I638I 0.16 TCGA-XF-A9SJ-01 14 92471670 92471670 C T TRIP11 Missense_Mutation p.D884N 0.07 deleterious(0.04) benign(0.102) TCGA-XF-A9SJ-01 14 96858545 96858545 G A AK7 Silent p.Q18Q 0.36 TCGA-XF-A9SJ-01 14 97022689 97022689 G T PAPOLA Missense_Mutation p.G648V 0.16 deleterious(0.02) benign(0.255) TCGA-XF-A9SJ-01 15 28501052 28501052 G A HERC2 Missense_Mutation p.S946L 0.06 benign(0.073) TCGA-XF-A9SJ-01 15 34534377 34534377 G C SLC12A6 Missense_Mutation p.F696L 0.06 deleterious(0.02) possibly_damaging(0.868) TCGA-XF-A9SJ-01 15 41535933 41535933 C G CHP1 Missense_Mutation p.L46V 0.32 deleterious(0.02) possibly_damaging(0.52) TCGA-XF-A9SJ-01 15 42729493 42729493 C G ZNF106 Missense_Mutation p.Q1538H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SJ-01 15 43044531 43044531 C G TTBK2 Missense_Mutation p.K971N 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 15 43044785 43044785 C T TTBK2 Missense_Mutation p.E887K 0.38 tolerated_low_confidence(0.08) benign(0.092) TCGA-XF-A9SJ-01 15 43044920 43044920 C G TTBK2 Missense_Mutation p.E842Q 0.37 tolerated_low_confidence(0.08) benign(0.238) TCGA-XF-A9SJ-01 15 43622527 43622527 C T LCMT2 Missense_Mutation p.R54Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 15 51757070 51757070 A G DMXL2 Missense_Mutation p.L2537P 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 15 65959945 65959945 A C DENND4A Missense_Mutation p.L1694V 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-XF-A9SJ-01 15 68497727 68497727 C G CALML4 5'UTR 0.16 TCGA-XF-A9SJ-01 15 75498511 75498511 G A C15orf39 Missense_Mutation p.C41Y 0.11 tolerated(0.41) possibly_damaging(0.588) TCGA-XF-A9SJ-01 15 77472070 77472070 C G PEAK1 Missense_Mutation p.K733N 0.10 tolerated_low_confidence(0.3) benign(0.004) TCGA-XF-A9SJ-01 15 79264243 79264243 G A RASGRF1 Nonsense_Mutation p.Q1232* 0.07 TCGA-XF-A9SJ-01 15 79310118 79310118 G A RASGRF1 Silent p.I579I 0.17 TCGA-XF-A9SJ-01 15 89400237 89400237 G A ACAN Missense_Mutation p.G1474E 0.12 tolerated(1) benign(0.074) TCGA-XF-A9SJ-01 15 90446523 90446523 G A C15orf38-AP3S2 Silent p.I199I 0.12 TCGA-XF-A9SJ-01 16 1798319 1798319 G C MAPK8IP3 Missense_Mutation p.E356Q 0.07 tolerated(0.08) benign(0.365) TCGA-XF-A9SJ-01 16 23718358 23718358 A G ERN2 Missense_Mutation p.C165R 0.13 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SJ-01 16 27561472 27561472 C T GTF3C1 5'Flank 0.32 TCGA-XF-A9SJ-01 16 30750651 30750651 C T SRCAP Missense_Mutation p.A3097V 0.20 unknown(0) TCGA-XF-A9SJ-01 16 30770756 30770756 G C C16orf93 Silent p.L188L 0.08 TCGA-XF-A9SJ-01 16 30771630 30771630 G C C16orf93 Silent p.L148L 0.14 TCGA-XF-A9SJ-01 16 30974836 30974836 G C SETD1A Silent p.L200L 0.12 TCGA-XF-A9SJ-01 16 31288029 31288029 G A ITGAM Silent p.E349E 0.36 TCGA-XF-A9SJ-01 16 4410337 4410337 C T CORO7 Missense_Mutation p.G684R 0.17 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SJ-01 16 47703166 47703166 C T PHKB Missense_Mutation p.S823F 0.16 deleterious(0.02) probably_damaging(0.958) TCGA-XF-A9SJ-01 16 68598451 68598451 G A ZFP90 Silent p.G587G 0.07 TCGA-XF-A9SJ-01 16 71482259 71482259 C G ZNF23 Missense_Mutation p.E557Q 0.22 deleterious(0.03) probably_damaging(0.961) TCGA-XF-A9SJ-01 16 74447572 74447572 G A CLEC18B Silent p.L153L 0.18 TCGA-XF-A9SJ-01 16 74729538 74729538 T C MLKL Missense_Mutation p.K40E 0.16 tolerated(0.96) benign(0) TCGA-XF-A9SJ-01 17 1554081 1554081 G A PRPF8 3'UTR 0.10 TCGA-XF-A9SJ-01 17 15848739 15848739 C A ADORA2B Missense_Mutation p.F59L 0.25 tolerated(1) benign(0.005) TCGA-XF-A9SJ-01 17 18042845 18042845 C T MYO15A Intron 0.23 TCGA-XF-A9SJ-01 17 21147529 21147529 C T C17orf103 Missense_Mutation p.D38N 0.24 deleterious(0) possibly_damaging(0.601) TCGA-XF-A9SJ-01 17 26912364 26912364 T A SPAG5 Missense_Mutation p.Q642H 0.07 tolerated(0.11) benign(0.002) TCGA-XF-A9SJ-01 17 26912396 26912396 G C SPAG5 Missense_Mutation p.Q632E 0.07 tolerated(0.36) benign(0.234) TCGA-XF-A9SJ-01 17 27047786 27047786 G C RPL23A Missense_Mutation p.L29F 0.08 deleterious(0.02) unknown(0) TCGA-XF-A9SJ-01 17 27051414 27051414 C T TLCD1 3'UTR 0.12 TCGA-XF-A9SJ-01 17 27943829 27943829 C T CORO6 Missense_Mutation p.E299K 0.05 deleterious(0.01) possibly_damaging(0.8) TCGA-XF-A9SJ-01 17 29311676 29311676 G A RNF135 Silent p.L138L 0.36 TCGA-XF-A9SJ-01 17 32953555 32953555 C T TMEM132E Silent p.T159T 0.14 TCGA-XF-A9SJ-01 17 35310557 35310557 G A AATF Missense_Mutation p.E219K 0.10 tolerated(0.12) benign(0.099) TCGA-XF-A9SJ-01 17 39680172 39680172 G A KRT19 Silent p.I342I 0.11 TCGA-XF-A9SJ-01 17 39919384 39919384 C T JUP Missense_Mutation p.D450N 0.09 deleterious(0) probably_damaging(0.935) TCGA-XF-A9SJ-01 17 40478196 40478196 C T STAT3 Missense_Mutation p.E435K 0.07 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SJ-01 17 40839976 40839976 G A CNTNAP1 Missense_Mutation p.R428Q 0.09 tolerated(0.33) possibly_damaging(0.457) TCGA-XF-A9SJ-01 17 42084858 42084858 G A NAGS Missense_Mutation p.E422K 0.19 deleterious(0.04) probably_damaging(1) TCGA-XF-A9SJ-01 17 42393784 42393784 C G RUNDC3A Missense_Mutation p.L329V 0.22 deleterious_low_confidence(0) benign(0.17) TCGA-XF-A9SJ-01 17 42636535 42636535 G A FZD2 Silent p.S493S 0.14 TCGA-XF-A9SJ-01 17 44248882 44248882 G A KANSL1 Missense_Mutation p.L210F 0.04 tolerated(0.14) probably_damaging(0.999) TCGA-XF-A9SJ-01 17 4806038 4806038 C T CHRNE Missense_Mutation p.E23K 0.09 deleterious(0.05) benign(0.423) TCGA-XF-A9SJ-01 17 48356558 48356558 G A TMEM92 Silent p.V123V 0.06 TCGA-XF-A9SJ-01 17 56083766 56083766 C T SRSF1 Missense_Mutation p.G106E 0.14 deleterious(0.03) benign(0.091) TCGA-XF-A9SJ-01 17 56649311 56649311 C G TEX14 Missense_Mutation p.E1276Q 0.11 tolerated(0.07) benign(0.133) TCGA-XF-A9SJ-01 17 6358786 6358786 C T PITPNM3 Missense_Mutation p.D933N 0.38 tolerated(0.12) benign(0.006) TCGA-XF-A9SJ-01 17 68129129 68129129 C T KCNJ16 Missense_Mutation p.P301S 0.32 tolerated(0.17) probably_damaging(1) TCGA-XF-A9SJ-01 17 73016592 73016592 A T ICT1 Nonsense_Mutation p.K126* 0.09 TCGA-XF-A9SJ-01 17 7388152 7388152 C T POLR2A Silent p.F23F 0.33 TCGA-XF-A9SJ-01 17 73946892 73946893 - AA ACOX1 Frame_Shift_Ins p.E421Lfs*8 0.30 TCGA-XF-A9SJ-01 17 78221936 78221936 C T SLC26A11 Silent p.D434D 0.11 TCGA-XF-A9SJ-01 17 80573751 80573751 C T WDR45B 3'UTR 0.09 TCGA-XF-A9SJ-01 17 8079611 8079611 C T TMEM107 5'UTR 0.18 TCGA-XF-A9SJ-01 17 8701869 8701869 G A MFSD6L Silent p.V190V 0.20 TCGA-XF-A9SJ-01 17 9757847 9757847 G A GLP2R Silent p.L180L 0.07 TCGA-XF-A9SJ-01 18 21739688 21739688 C T CABYR Missense_Mutation p.S265L 0.12 deleterious(0) benign(0.199) TCGA-XF-A9SJ-01 18 32887209 32887209 G A ZNF271 RNA 0.18 TCGA-XF-A9SJ-01 18 40854178 40854178 C T SYT4 Silent p.K72K 0.24 TCGA-XF-A9SJ-01 18 66513652 66513652 G A CCDC102B Silent p.V310V 0.17 TCGA-XF-A9SJ-01 18 7926630 7926630 C T PTPRM Silent p.F204F 0.17 TCGA-XF-A9SJ-01 18 8376056 8376056 G C PTPRM Missense_Mutation p.E1062Q 0.10 deleterious(0.05) possibly_damaging(0.777) TCGA-XF-A9SJ-01 18 9257772 9257772 G T ANKRD12 Nonsense_Mutation p.E1503* 0.06 TCGA-XF-A9SJ-01 19 10673502 10673502 C T KRI1 Missense_Mutation p.D102N 0.07 tolerated(0.25) benign(0.003) TCGA-XF-A9SJ-01 19 10795246 10795246 C G ILF3 Intron 0.39 TCGA-XF-A9SJ-01 19 12444294 12444303 CATTTCCCGG - ZNF563 Intron 0.12 TCGA-XF-A9SJ-01 19 12962831 12962831 G A MAST1 Silent p.A286A 0.15 TCGA-XF-A9SJ-01 19 13342574 13342574 C T CACNA1A Missense_Mutation p.E1784K 0.11 possibly_damaging(0.486) TCGA-XF-A9SJ-01 19 14208578 14208578 G A PRKACA Nonsense_Mutation p.Q182* 0.18 TCGA-XF-A9SJ-01 19 16532279 16532279 C T EPS15L1 Silent p.V267V 0.16 TCGA-XF-A9SJ-01 19 17660263 17660263 G C FAM129C Missense_Mutation p.K590N 0.10 deleterious(0.02) benign(0.33) TCGA-XF-A9SJ-01 19 18451503 18451503 G A PGPEP1 Silent p.P4P 0.25 TCGA-XF-A9SJ-01 19 1979563 1979563 T C CSNK1G2 Missense_Mutation p.L308P 0.15 deleterious(0.05) probably_damaging(1) TCGA-XF-A9SJ-01 19 31769712 31769712 C T TSHZ3 Silent p.E329E 0.24 TCGA-XF-A9SJ-01 19 33870338 33870338 T C CEBPG Missense_Mutation p.Y65H 0.11 tolerated(0.07) benign(0.434) TCGA-XF-A9SJ-01 19 35450035 35450035 C A ZNF792 Nonsense_Mutation p.E242* 0.08 TCGA-XF-A9SJ-01 19 36604919 36604919 C T POLR2I Missense_Mutation p.E105K 0.19 deleterious(0) possibly_damaging(0.907) TCGA-XF-A9SJ-01 19 37975419 37975419 G A ZNF570 Missense_Mutation p.E299K 0.06 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SJ-01 19 38057104 38057104 G A ZNF571 Missense_Mutation p.R76C 0.05 tolerated(0.18) benign(0.001) TCGA-XF-A9SJ-01 19 38781187 38781187 G A SPINT2 Silent p.E188E 0.10 TCGA-XF-A9SJ-01 19 39127590 39127590 T C EIF3K 3'UTR 0.24 TCGA-XF-A9SJ-01 19 41816244 41816244 C G CCDC97 Missense_Mutation p.A10G 0.27 deleterious_low_confidence(0.03) benign(0.045) TCGA-XF-A9SJ-01 19 42874353 42874353 G A MEGF8 Missense_Mutation p.E2216K 0.09 deleterious(0.01) probably_damaging(0.954) TCGA-XF-A9SJ-01 19 43411741 43411741 G A PSG6 Silent p.T324T 0.09 TCGA-XF-A9SJ-01 19 4359211 4359211 G T MPND Nonsense_Mutation p.E430* 0.20 TCGA-XF-A9SJ-01 19 44536353 44536353 G A ZNF222 Missense_Mutation p.D216N 0.08 tolerated(0.14) possibly_damaging(0.525) TCGA-XF-A9SJ-01 19 45422466 45422466 G C APOC1 Missense_Mutation p.E77D 0.08 tolerated(0.29) possibly_damaging(0.874) TCGA-XF-A9SJ-01 19 45872213 45872213 G A ERCC2 Missense_Mutation p.S74L 0.30 deleterious(0) possibly_damaging(0.884) TCGA-XF-A9SJ-01 19 46733721 46733721 G A IGFL1 Silent p.L90L 0.09 TCGA-XF-A9SJ-01 19 49494690 49494690 C T GYS1 Missense_Mutation p.E57K 0.19 tolerated(0.06) probably_damaging(0.995) TCGA-XF-A9SJ-01 19 49979749 49979749 G C FLT3LG Missense_Mutation p.A90P 0.14 deleterious(0) probably_damaging(0.967) TCGA-XF-A9SJ-01 19 50383538 50383538 C G TBC1D17 Missense_Mutation p.D66E 0.18 tolerated(0.16) benign(0.032) TCGA-XF-A9SJ-01 19 51522333 51522333 C T KLK10 Silent p.A18A 0.17 TCGA-XF-A9SJ-01 19 52448462 52448463 TT C ZNF613 Frame_Shift_Del p.L443* 0.11 TCGA-XF-A9SJ-01 19 57743107 57743107 C G AURKC Intron 0.09 TCGA-XF-A9SJ-01 19 7571004 7571004 C T C19orf45 Missense_Mutation p.A387V 0.31 tolerated(0.26) benign(0.08) TCGA-XF-A9SJ-01 1 100672099 100672099 C T DBT Missense_Mutation p.A371T 0.19 deleterious(0) probably_damaging(0.936) TCGA-XF-A9SJ-01 1 109373225 109373225 C G AKNAD1 Silent p.T598T 0.12 TCGA-XF-A9SJ-01 1 110050080 110050080 G A AMIGO1 Silent p.V485V 0.09 TCGA-XF-A9SJ-01 1 110950440 110950440 T G LAMTOR5 Missense_Mutation p.S17R 0.16 tolerated_low_confidence(0.7) possibly_damaging(0.504) TCGA-XF-A9SJ-01 1 111147044 111147044 C T KCNA2 Missense_Mutation p.E121K 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-XF-A9SJ-01 1 111992469 111992469 G A ATP5F1 Silent p.L17L 0.32 TCGA-XF-A9SJ-01 1 116233903 116233903 A G VANGL1 Missense_Mutation p.N493S 0.27 tolerated(0.69) benign(0.061) TCGA-XF-A9SJ-01 1 118609445 118609445 G A SPAG17 Silent p.V821V 0.14 TCGA-XF-A9SJ-01 1 145539408 145539408 C G ITGA10 Missense_Mutation p.P1026R 0.15 deleterious(0.03) possibly_damaging(0.795) TCGA-XF-A9SJ-01 1 151001264 151001264 C T PRUNE Silent p.A259A 0.06 TCGA-XF-A9SJ-01 1 152081600 152081600 C T TCHH Missense_Mutation p.E1365K 0.08 unknown(0) TCGA-XF-A9SJ-01 1 152192623 152192623 G A HRNR Silent p.H494H 0.07 TCGA-XF-A9SJ-01 1 153507130 153507130 G A S100A6 3'UTR 0.05 TCGA-XF-A9SJ-01 1 154562780 154562780 C G ADAR Missense_Mutation p.L792F 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 1 156339062 156339062 G A RHBG Missense_Mutation p.A8T 0.05 tolerated(0.1) benign(0.001) TCGA-XF-A9SJ-01 1 156594414 156594414 G A HAPLN2 Nonsense_Mutation p.W193* 0.17 TCGA-XF-A9SJ-01 1 156670387 156670387 C T CRABP2 Missense_Mutation p.G105S 0.06 deleterious(0.02) possibly_damaging(0.571) TCGA-XF-A9SJ-01 1 15956926 15956926 A G DDI2 Missense_Mutation p.I125M 0.05 tolerated(0.11) benign(0.002) TCGA-XF-A9SJ-01 1 160054063 160054063 G A KCNJ9 Silent p.L81L 0.12 TCGA-XF-A9SJ-01 1 16266004 16266004 G A SPEN 3'UTR 0.07 TCGA-XF-A9SJ-01 1 173455477 173455477 C T PRDX6 Silent p.L161L 0.06 TCGA-XF-A9SJ-01 1 173628300 173628300 C T ANKRD45 Missense_Mutation p.M86I 0.06 tolerated(0.19) benign(0.173) TCGA-XF-A9SJ-01 1 179520532 179520532 C G NPHS2 Missense_Mutation p.E310Q 0.06 tolerated(0.05) probably_damaging(0.972) TCGA-XF-A9SJ-01 1 185880860 185880860 C T HMCN1 Missense_Mutation p.S283F 0.18 probably_damaging(0.962) TCGA-XF-A9SJ-01 1 202565968 202565968 C T SYT2 Missense_Mutation p.A393T 0.18 deleterious(0) possibly_damaging(0.717) TCGA-XF-A9SJ-01 1 204234079 204234079 G T PLEKHA6 Missense_Mutation p.H124Q 0.25 deleterious(0.03) benign(0.281) TCGA-XF-A9SJ-01 1 22055186 22055186 C A USP48 Missense_Mutation p.D443Y 0.07 deleterious(0) benign(0.358) TCGA-XF-A9SJ-01 1 226032876 226032876 C G EPHX1 Missense_Mutation p.S399C 0.05 deleterious(0) benign(0.008) TCGA-XF-A9SJ-01 1 247902063 247902063 G T OR14K1 Silent p.L49L 0.05 TCGA-XF-A9SJ-01 1 248737861 248737861 G A OR2T34 Silent p.F66F 0.12 TCGA-XF-A9SJ-01 1 26879984 26879984 G A RPS6KA1 Missense_Mutation p.E200K 0.08 deleterious(0) probably_damaging(0.953) TCGA-XF-A9SJ-01 1 32692075 32692075 G A EIF3I Missense_Mutation p.G158R 0.12 tolerated(0.07) benign(0.003) TCGA-XF-A9SJ-01 1 35321002 35321002 G A SMIM12 3'UTR 0.06 TCGA-XF-A9SJ-01 1 3547564 3547564 C A WRAP73 Missense_Mutation p.C453F 0.23 tolerated_low_confidence(0.78) benign(0) TCGA-XF-A9SJ-01 1 42922574 42922574 C T PPCS Missense_Mutation p.S113L 0.09 tolerated(0.18) benign(0.003) TCGA-XF-A9SJ-01 1 43672506 43672506 A C WDR65 Missense_Mutation p.K553T 0.09 deleterious(0.02) possibly_damaging(0.754) TCGA-XF-A9SJ-01 1 52498480 52498480 C T KTI12 Silent p.L318L 0.07 TCGA-XF-A9SJ-01 1 53558461 53558461 T G SLC1A7 Splice_Site p.X266_splice 0.07 TCGA-XF-A9SJ-01 1 67101697 67101697 C A SGIP1 Nonsense_Mutation p.S57* 0.16 TCGA-XF-A9SJ-01 1 76254912 76254912 G A RABGGTB Missense_Mutation p.M60I 0.10 tolerated(0.09) benign(0.013) TCGA-XF-A9SJ-01 1 76255006 76255006 G C RABGGTB Missense_Mutation p.D92H 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9SJ-01 1 8022891 8022891 G A PARK7 Missense_Mutation p.E16K 0.12 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SJ-01 20 18516375 18516375 G A SEC23B Missense_Mutation p.V465I 0.19 tolerated(0.69) benign(0.06) TCGA-XF-A9SJ-01 20 25666735 25666735 G A ZNF337 Silent p.V17V 0.06 TCGA-XF-A9SJ-01 20 33225730 33225730 G A PIGU Silent p.L126L 0.11 TCGA-XF-A9SJ-01 20 35384168 35384168 G C DSN1 Missense_Mutation p.Q264E 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-XF-A9SJ-01 20 35743657 35743657 C T MROH8 Silent p.Q845Q 0.08 TCGA-XF-A9SJ-01 20 4162457 4162457 A T SMOX Missense_Mutation p.N148I 0.05 deleterious(0) possibly_damaging(0.732) TCGA-XF-A9SJ-01 20 42087020 42087020 G C SRSF6 Missense_Mutation p.E43Q 0.26 deleterious(0.03) probably_damaging(0.975) TCGA-XF-A9SJ-01 20 48431707 48431707 C T SLC9A8 Silent p.F63F 0.14 TCGA-XF-A9SJ-01 21 10942760 10942760 T C TPTE Silent p.K227K 0.06 TCGA-XF-A9SJ-01 21 35742842 35742842 A C KCNE2 Missense_Mutation p.Y22S 0.05 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SJ-01 21 40667668 40667668 C G BRWD1 Splice_Site p.X203_splice 0.62 TCGA-XF-A9SJ-01 21 42824582 42824582 G A MX1 Missense_Mutation p.R515K 0.22 tolerated(0.87) benign(0.004) TCGA-XF-A9SJ-01 21 46387037 46387037 C T FAM207A Silent p.L147L 0.27 TCGA-XF-A9SJ-01 21 47836564 47836564 G A PCNT Silent p.V2244V 0.11 TCGA-XF-A9SJ-01 22 22707529 22707529 C T IGLV5-48 Silent p.L39L 0.12 TCGA-XF-A9SJ-01 22 29837967 29837967 C T RFPL1 Silent p.F270F 0.09 TCGA-XF-A9SJ-01 22 37771338 37771338 C T ELFN2 Silent p.G79G 0.09 TCGA-XF-A9SJ-01 22 39104861 39104861 G A GTPBP1 Silent p.V68V 0.10 TCGA-XF-A9SJ-01 22 39137511 39137511 G A SUN2 Silent p.V399V 0.16 TCGA-XF-A9SJ-01 22 45132747 45132747 G A PRR5 Missense_Mutation p.V286M 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9SJ-01 22 45577205 45577205 G A NUP50 Missense_Mutation p.V348I 0.12 tolerated(0.5) benign(0.042) TCGA-XF-A9SJ-01 22 45691472 45691472 C G UPK3A Missense_Mutation p.H246D 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SJ-01 2 109382741 109382741 C G RANBP2 Missense_Mutation p.L1916V 0.13 tolerated(0.4) benign(0.001) TCGA-XF-A9SJ-01 2 113765477 113765477 G A IL36A Silent p.Q111Q 0.07 TCGA-XF-A9SJ-01 2 128393861 128393861 C T MYO7B Missense_Mutation p.R2003W 0.41 deleterious(0) probably_damaging(1) TCGA-XF-A9SJ-01 2 130913680 130913680 T C SMPD4 Missense_Mutation p.Q445R 0.19 deleterious(0) possibly_damaging(0.607) TCGA-XF-A9SJ-01 2 131520004 131520004 C T AMER3 Missense_Mutation p.S120F 0.09 deleterious(0.01) benign(0.048) TCGA-XF-A9SJ-01 2 135926277 135926277 C G RAB3GAP1 Missense_Mutation p.R965G 0.11 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SJ-01 2 148693080 148693080 C G ORC4 Nonstop_Mutation p.*437Sext*2 0.09 TCGA-XF-A9SJ-01 2 150061800 150061800 C T LYPD6B Silent p.V37V 0.08 TCGA-XF-A9SJ-01 2 152320461 152320461 A C RIF1 Missense_Mutation p.E1476A 0.25 deleterious(0.04) possibly_damaging(0.611) TCGA-XF-A9SJ-01 2 152477490 152477490 C G NEB Missense_Mutation p.L3501F 0.35 probably_damaging(0.986) TCGA-XF-A9SJ-01 2 153504334 153504334 G A FMNL2 Missense_Mutation p.R1065Q 0.07 unknown(0) TCGA-XF-A9SJ-01 2 168105925 168105925 A G XIRP2 Missense_Mutation p.I2675V 0.09 benign(0.311) TCGA-XF-A9SJ-01 2 179485545 179485545 G A TTN Silent p.L15264L 0.10 TCGA-XF-A9SJ-01 2 202211274 202211274 C G ALS2CR12 Missense_Mutation p.R120T 0.24 tolerated(0.31) benign(0.007) TCGA-XF-A9SJ-01 2 202622166 202622166 C T ALS2 Missense_Mutation p.G477E 0.07 deleterious(0.04) probably_damaging(0.938) TCGA-XF-A9SJ-01 2 204131303 204131303 C T CYP20A1 Missense_Mutation p.H167Y 0.16 tolerated(0.28) possibly_damaging(0.449) TCGA-XF-A9SJ-01 2 220146449 220146449 G A DNAJB2 Missense_Mutation p.R62Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 2 27280235 27280235 G A AGBL5 Missense_Mutation p.D534N 0.11 deleterious(0.02) probably_damaging(0.978) TCGA-XF-A9SJ-01 2 27282102 27282102 G A AGBL5 Missense_Mutation p.R640Q 0.05 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-XF-A9SJ-01 2 27591268 27591268 G T EIF2B4 Missense_Mutation p.S207R 0.07 tolerated(0.14) probably_damaging(0.948) TCGA-XF-A9SJ-01 2 27717245 27717245 G T FNDC4 Silent p.I74I 0.17 TCGA-XF-A9SJ-01 2 28065998 28065998 G T RBKS Silent p.V150V 0.11 TCGA-XF-A9SJ-01 2 36771587 36771587 G A CRIM1 Missense_Mutation p.E898K 0.10 deleterious(0.03) benign(0.014) TCGA-XF-A9SJ-01 2 42836606 42836606 G T MTA3 Nonsense_Mutation p.E67* 0.11 TCGA-XF-A9SJ-01 2 71189911 71189911 G T ATP6V1B1 Nonsense_Mutation p.E264* 0.41 TCGA-XF-A9SJ-01 2 71742875 71742875 C T DYSF Silent p.F294F 0.12 TCGA-XF-A9SJ-01 2 73902000 73902000 C T ALMS1P RNA 0.06 TCGA-XF-A9SJ-01 2 74432988 74432988 C T MTHFD2 Silent p.L86L 0.22 TCGA-XF-A9SJ-01 2 85553672 85553672 G C TGOLN2 Missense_Mutation p.L395V 0.05 deleterious(0) possibly_damaging(0.801) TCGA-XF-A9SJ-01 2 86255102 86255102 T C POLR1A Silent p.P1656P 0.22 TCGA-XF-A9SJ-01 2 88425770 88425770 C G FABP1 Silent p.G55G 0.03 TCGA-XF-A9SJ-01 2 99013389 99013389 G C CNGA3 Missense_Mutation p.E586Q 0.19 deleterious(0.01) benign(0.236) TCGA-XF-A9SJ-01 3 119887216 119887216 C T GPR156 Missense_Mutation p.E370K 0.05 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SJ-01 3 124646669 124646669 C G MUC13 Missense_Mutation p.S74T 0.21 tolerated(0.98) unknown(0) TCGA-XF-A9SJ-01 3 135870978 135870978 T C MSL2 Missense_Mutation p.T249A 0.11 tolerated(0.87) benign(0) TCGA-XF-A9SJ-01 3 148749927 148749927 C T HLTF 3'UTR 0.26 TCGA-XF-A9SJ-01 3 151045986 151045986 C G P2RY13 Missense_Mutation p.K286N 0.11 tolerated(0.63) benign(0.014) TCGA-XF-A9SJ-01 3 151155432 151155432 G A IGSF10 Missense_Mutation p.S2306L 0.05 deleterious(0) probably_damaging(0.989) TCGA-XF-A9SJ-01 3 182897406 182897406 T C MCF2L2 Silent p.E1060E 0.06 TCGA-XF-A9SJ-01 3 184090622 184090622 C G THPO Silent p.L247L 0.06 TCGA-XF-A9SJ-01 3 186943250 186943250 C T MASP1 Missense_Mutation p.V535I 0.08 tolerated(0.15) benign(0.434) TCGA-XF-A9SJ-01 3 197639602 197639602 C T IQCG Missense_Mutation p.E303K 0.08 deleterious(0) possibly_damaging(0.701) TCGA-XF-A9SJ-01 3 197687151 197687151 C T LMLN Missense_Mutation p.S20L 0.17 deleterious_low_confidence(0.02) benign(0.004) TCGA-XF-A9SJ-01 3 28476669 28476669 T C ZCWPW2 Missense_Mutation p.V134A 0.08 tolerated(0.08) possibly_damaging(0.906) TCGA-XF-A9SJ-01 3 49293728 49293728 G A CCDC36 Silent p.V266V 0.22 TCGA-XF-A9SJ-01 3 53133453 53133453 G A RFT1 Silent p.I384I 0.09 TCGA-XF-A9SJ-01 3 98251739 98251739 G A GPR15 Missense_Mutation p.G288R 0.11 deleterious(0.03) probably_damaging(0.971) TCGA-XF-A9SJ-01 4 111539548 111539548 T C PITX2 Silent p.S236S 0.06 TCGA-XF-A9SJ-01 4 11401108 11401108 G C HS3ST1 Missense_Mutation p.I174M 0.09 deleterious(0.04) probably_damaging(0.946) TCGA-XF-A9SJ-01 4 13462410 13462410 C G RAB28 Missense_Mutation p.E102Q 0.19 tolerated(0.21) benign(0.141) TCGA-XF-A9SJ-01 4 141598251 141598251 G C TBC1D9 Missense_Mutation p.L286V 0.07 deleterious(0.02) benign(0.248) TCGA-XF-A9SJ-01 4 144107020 144107020 G A USP38 Silent p.P139P 0.24 TCGA-XF-A9SJ-01 4 155254126 155254126 G T DCHS2 Missense_Mutation p.H579Q 0.40 tolerated(0.61) benign(0) TCGA-XF-A9SJ-01 4 156618222 156618222 G A GUCY1A3 Missense_Mutation p.R68Q 0.07 deleterious(0.01) possibly_damaging(0.716) TCGA-XF-A9SJ-01 4 1801132 1801132 C - FGFR3 Frame_Shift_Del p.L88Wfs*10 0.17 TCGA-XF-A9SJ-01 4 185309878 185309878 G A IRF2 3'UTR 0.06 TCGA-XF-A9SJ-01 4 40104297 40104297 C G N4BP2 Missense_Mutation p.Q278E 0.18 tolerated(0.33) benign(0.013) TCGA-XF-A9SJ-01 4 40752969 40752969 C T NSUN7 Nonsense_Mutation p.Q87* 0.13 TCGA-XF-A9SJ-01 4 69313176 69313176 C T TMPRSS11E 5'UTR 0.06 TCGA-XF-A9SJ-01 4 69817335 69817335 C T UGT2A3 Silent p.V48V 0.11 TCGA-XF-A9SJ-01 4 7043890 7043890 C T CCDC96 Missense_Mutation p.R259K 0.16 tolerated(1) benign(0.012) TCGA-XF-A9SJ-01 4 70599967 70599967 G C SULT1B1 Missense_Mutation p.R131G 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SJ-01 4 88029382 88029382 A C AFF1 Missense_Mutation p.D483A 0.34 deleterious(0.03) unknown(0) TCGA-XF-A9SJ-01 5 101599431 101599431 C T SLCO4C1 Missense_Mutation p.G286R 0.24 deleterious(0) probably_damaging(0.952) TCGA-XF-A9SJ-01 5 10748303 10748303 C G DAP Missense_Mutation p.E46Q 0.10 tolerated(0.11) benign(0.012) TCGA-XF-A9SJ-01 5 110445954 110445954 T C WDR36 Missense_Mutation p.Y521H 0.08 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SJ-01 5 127873107 127873107 G A FBN2 Missense_Mutation p.R64C 0.31 tolerated(0.06) unknown(0) TCGA-XF-A9SJ-01 5 135188350 135188350 C T SLC25A48 Silent p.L87L 0.10 TCGA-XF-A9SJ-01 5 140027477 140027477 G T IK 5'UTR 0.15 TCGA-XF-A9SJ-01 5 140182034 140182034 G A PCDHA3 Missense_Mutation p.V418M 0.25 tolerated_low_confidence(0.1) possibly_damaging(0.466) TCGA-XF-A9SJ-01 5 140515333 140515333 T G PCDHB5 Missense_Mutation p.F106C 0.59 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-XF-A9SJ-01 5 14487801 14487801 C G TRIO Missense_Mutation p.S2355C 0.62 benign(0.216) TCGA-XF-A9SJ-01 5 150925467 150925467 C T FAT2 Missense_Mutation p.D1741N 0.17 possibly_damaging(0.9) TCGA-XF-A9SJ-01 5 176378563 176378563 G C UIMC1 Missense_Mutation p.S452C 0.06 deleterious(0) probably_damaging(0.959) TCGA-XF-A9SJ-01 5 179274980 179274980 G T C5orf45 Silent p.L71L 0.14 TCGA-XF-A9SJ-01 5 32101003 32101003 C A PDZD2 Intron 0.13 TCGA-XF-A9SJ-01 5 36168486 36168486 C T SKP2 Missense_Mutation p.S203F 0.05 tolerated(0.16) possibly_damaging(0.814) TCGA-XF-A9SJ-01 5 40747077 40747077 G A TTC33 Missense_Mutation p.S15L 0.18 deleterious(0.05) probably_damaging(0.962) TCGA-XF-A9SJ-01 5 55063741 55063741 C T DDX4 Missense_Mutation p.R123W 0.09 tolerated_low_confidence(0.05) benign(0.006) TCGA-XF-A9SJ-01 5 55253063 55253063 A G IL6ST Missense_Mutation p.Y344H 0.09 tolerated(0.5) benign(0.002) TCGA-XF-A9SJ-01 5 95067330 95067330 G A RHOBTB3 5'UTR 0.27 TCGA-XF-A9SJ-01 6 134493443 134493443 G T SGK1 Missense_Mutation p.P320Q 0.19 deleterious(0) probably_damaging(0.978) TCGA-XF-A9SJ-01 6 167728920 167728920 G C UNC93A Missense_Mutation p.E452Q 0.05 tolerated(0.39) benign(0.039) TCGA-XF-A9SJ-01 6 17637526 17637526 A C NUP153 Silent p.S774S 0.09 TCGA-XF-A9SJ-01 6 26225698 26225698 G A HIST1H3E Missense_Mutation p.E106K 0.22 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-XF-A9SJ-01 6 26393148 26393148 G A BTN2A2 Missense_Mutation p.E509K 0.19 deleterious(0.04) benign(0.033) TCGA-XF-A9SJ-01 6 27107237 27107237 C T HIST1H4I Silent p.L50L 0.14 TCGA-XF-A9SJ-01 6 28554245 28554245 C T SCAND3 Missense_Mutation p.E84K 0.16 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-XF-A9SJ-01 6 28889711 28889711 C T TRIM27 Silent p.K158K 0.05 TCGA-XF-A9SJ-01 6 30153743 30153743 G A TRIM26 Silent p.L510L 0.21 TCGA-XF-A9SJ-01 6 36168787 36168787 C T BRPF3 Missense_Mutation p.L230F 0.06 deleterious(0) probably_damaging(1) TCGA-XF-A9SJ-01 6 38976676 38976676 G C DNAH8 Missense_Mutation p.R4217P 0.39 probably_damaging(1) TCGA-XF-A9SJ-01 6 39895180 39895180 C T MOCS1 Silent p.R46R 0.17 TCGA-XF-A9SJ-01 6 43477448 43477448 G T LRRC73 Missense_Mutation p.R26S 0.18 tolerated(0.07) benign(0.095) TCGA-XF-A9SJ-01 6 43565432 43565432 G T POLH Splice_Site p.X164_splice 0.07 TCGA-XF-A9SJ-01 6 44145133 44145133 G T CAPN11 Missense_Mutation p.Q464H 0.30 tolerated(0.6) benign(0.013) TCGA-XF-A9SJ-01 6 46678360 46678360 G A PLA2G7 Silent p.L233L 0.14 TCGA-XF-A9SJ-01 6 52268580 52268580 C T PAQR8 Missense_Mutation p.S190F 0.11 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SJ-01 6 56492946 56492946 C T DST Missense_Mutation p.E960K 0.09 possibly_damaging(0.492) TCGA-XF-A9SJ-01 6 84292052 84292052 G A SNAP91 Missense_Mutation p.P680S 0.11 tolerated(0.06) probably_damaging(0.993) TCGA-XF-A9SJ-01 7 10979655 10979655 C T NDUFA4 Silent p.K10K 0.04 TCGA-XF-A9SJ-01 7 126086196 126086196 C G GRM8 Missense_Mutation p.E887D 0.05 tolerated(0.18) benign(0.217) TCGA-XF-A9SJ-01 7 130007228 130007228 G A CPA5 Missense_Mutation p.S285N 0.08 tolerated(0.69) benign(0.001) TCGA-XF-A9SJ-01 7 142028452 142028452 G T TRBV6-1 Silent p.L62L 0.03 TCGA-XF-A9SJ-01 7 150671863 150671863 C T KCNH2 Silent p.Q81Q 0.09 TCGA-XF-A9SJ-01 7 150912711 150912711 G A ABCF2 Silent p.Y503Y 0.09 TCGA-XF-A9SJ-01 7 23775363 23775363 A T STK31 Missense_Mutation p.Q230H 0.22 deleterious(0.02) possibly_damaging(0.765) TCGA-XF-A9SJ-01 7 36459777 36459777 G A ANLN Splice_Site p.X624_splice 0.12 TCGA-XF-A9SJ-01 7 37354468 37354468 A G ELMO1 Missense_Mutation p.Y60H 0.47 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SJ-01 7 44620694 44620694 T G TMED4 Silent p.R178R 0.07 TCGA-XF-A9SJ-01 7 47342707 47342707 C T TNS3 Missense_Mutation p.E1100K 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-XF-A9SJ-01 7 48317780 48317780 C G ABCA13 Nonsense_Mutation p.S2330* 0.38 TCGA-XF-A9SJ-01 7 73097945 73097945 G A WBSCR22 5'Flank 0.24 TCGA-XF-A9SJ-01 7 73474216 73474216 G A ELN Missense_Mutation p.G472E 0.16 unknown(0) TCGA-XF-A9SJ-01 7 7625319 7625319 G C MIOS Missense_Mutation p.E567D 0.07 tolerated(0.62) benign(0.132) TCGA-XF-A9SJ-01 7 99277533 99277533 C T CYP3A5 5'UTR 0.10 TCGA-XF-A9SJ-01 8 101016307 101016307 C G RGS22 Missense_Mutation p.G825A 0.04 tolerated(0.37) benign(0.017) TCGA-XF-A9SJ-01 8 113402947 113402947 G C CSMD3 Missense_Mutation p.D1960E 0.10 tolerated(1) possibly_damaging(0.696) TCGA-XF-A9SJ-01 8 120118505 120118505 G A COLEC10 3'UTR 0.28 TCGA-XF-A9SJ-01 8 121535635 121535635 C T MTBP 3'UTR 0.06 TCGA-XF-A9SJ-01 8 126085447 126085447 C G KIAA0196 Silent p.L366L 0.06 TCGA-XF-A9SJ-01 8 18513178 18513178 G C PSD3 Missense_Mutation p.I730M 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A9SJ-01 8 36793376 36793376 G A KCNU1 Missense_Mutation p.E1130K 0.22 tolerated_low_confidence(0.16) benign(0) TCGA-XF-A9SJ-01 8 38172285 38172285 C G WHSC1L1 Missense_Mutation p.E708Q 0.31 deleterious(0.01) probably_damaging(0.917) TCGA-XF-A9SJ-01 8 56436091 56436091 G A XKR4 Missense_Mutation p.E420K 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-XF-A9SJ-01 8 67341396 67341396 C T RRS1 Silent p.L10L 0.31 TCGA-XF-A9SJ-01 8 8233800 8233800 C T SGK223 Missense_Mutation p.E707K 0.21 probably_damaging(0.98) TCGA-XF-A9SJ-01 8 91075644 91075644 C T CALB1 Missense_Mutation p.E166K 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9SJ-01 8 97274337 97274337 G C PTDSS1 Missense_Mutation p.M23I 0.29 tolerated(0.37) benign(0.03) TCGA-XF-A9SJ-01 9 104187278 104187278 G C ALDOB Silent p.L282L 0.06 TCGA-XF-A9SJ-01 9 125642499 125642499 C T RC3H2 Intron 0.05 TCGA-XF-A9SJ-01 9 127693603 127693603 C G GOLGA1 Missense_Mutation p.R73T 0.31 deleterious(0.03) benign(0.016) TCGA-XF-A9SJ-01 9 135201758 135201758 A G SETX Missense_Mutation p.Y1743H 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SJ-01 9 136211147 136211147 G C MED22 Silent p.L82L 0.05 TCGA-XF-A9SJ-01 9 26892427 26892427 G A CAAP1 Missense_Mutation p.S96L 0.21 tolerated_low_confidence(0.31) unknown(0) TCGA-XF-A9SJ-01 9 35869949 35869949 G A OR13J1 Silent p.V150V 0.30 TCGA-XF-A9SJ-01 9 72072037 72072037 G C APBA1 Missense_Mutation p.Q512E 0.05 deleterious(0.03) benign(0.022) TCGA-XF-A9SJ-01 9 7799694 7799694 G A TMEM261 Missense_Mutation p.T14I 0.28 tolerated(0.39) benign(0) TCGA-XF-A9SJ-01 9 87325686 87325686 A C NTRK2 Missense_Mutation p.N188T 0.12 tolerated(0.69) benign(0.013) TCGA-XF-A9SJ-01 X 10094307 10094307 C G WWC3 Nonsense_Mutation p.Y689* 0.10 TCGA-XF-A9SJ-01 X 130678906 130678906 C T OR13H1 Silent p.L287L 0.40 TCGA-XF-A9SJ-01 X 19506967 19506967 G A MAP3K15 Silent p.A160A 0.07 TCGA-XF-A9SJ-01 X 29417410 29417410 G A IL1RAPL1 Missense_Mutation p.E230K 0.11 tolerated(0.41) benign(0.341) TCGA-XF-A9SJ-01 X 35989825 35989825 G C CXorf22 Missense_Mutation p.R698T 0.54 tolerated(0.2) benign(0.009) TCGA-XF-A9SJ-01 X 44920639 44920639 G A KDM6A Nonsense_Mutation p.W467* 0.56 TCGA-XF-A9SJ-01 X 47102076 47102076 G A USP11 Missense_Mutation p.E557K 0.14 deleterious(0.02) benign(0.278) TCGA-XF-A9SJ-01 X 55650514 55650514 G A FOXR2 Missense_Mutation p.E124K 0.15 tolerated(0.1) benign(0.045) TCGA-XF-A9SJ-01 X 71427803 71427803 C G ERCC6L Missense_Mutation p.D272H 0.14 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SJ-01 X 76856024 76856024 T C ATRX Missense_Mutation p.N1859S 0.05 benign(0.06) TCGA-XF-A9SK-01 10 103190166 103190166 G A BTRC Missense_Mutation p.R38Q 0.30 deleterious_low_confidence(0.02) benign(0.001) TCGA-XF-A9SK-01 10 103898488 103898488 C T PPRC1 Missense_Mutation p.S152L 0.18 deleterious(0) probably_damaging(0.984) TCGA-XF-A9SK-01 10 105215037 105215037 G C CALHM1 Silent p.T341T 0.31 TCGA-XF-A9SK-01 10 105420847 105420847 C T SH3PXD2A Missense_Mutation p.M166I 0.34 deleterious(0.04) possibly_damaging(0.553) TCGA-XF-A9SK-01 10 123846908 123846908 G C TACC2 Silent p.T1631T 0.24 TCGA-XF-A9SK-01 10 125526490 125526490 G A CPXM2 Missense_Mutation p.T493M 0.26 deleterious(0.05) probably_damaging(0.991) TCGA-XF-A9SK-01 10 60123418 60123418 C G UBE2D1 Missense_Mutation p.P57R 0.21 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-XF-A9SK-01 10 70549495 70549495 G A CCAR1 Silent p.L1072L 0.29 TCGA-XF-A9SK-01 10 70551080 70551080 G A CCAR1 3'UTR 0.32 TCGA-XF-A9SK-01 10 73462367 73462367 C G CDH23 Silent p.L475L 0.35 TCGA-XF-A9SK-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.30 TCGA-XF-A9SK-01 11 104871090 104871090 C T CASP5 Missense_Mutation p.D297N 0.36 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SK-01 11 10555657 10555657 G A RNF141 Missense_Mutation p.P17S 0.19 tolerated_low_confidence(0.41) benign(0.158) TCGA-XF-A9SK-01 11 31312247 31312247 C T DCDC1 Missense_Mutation p.G303S 0.17 deleterious(0.04) probably_damaging(0.939) TCGA-XF-A9SK-01 11 35229738 35229738 C G CD44 Missense_Mutation p.L501V 0.27 deleterious(0.03) benign(0.117) TCGA-XF-A9SK-01 11 380902 380902 G A B4GALNT4 Missense_Mutation p.E983K 0.17 tolerated(0.57) unknown(0) TCGA-XF-A9SK-01 11 45204507 45204507 G A PRDM11 Missense_Mutation p.D107N 0.43 tolerated(0.64) benign(0.015) TCGA-XF-A9SK-01 11 55861513 55861513 C T OR8I2 Missense_Mutation p.L244F 0.16 deleterious(0.02) benign(0.057) TCGA-XF-A9SK-01 11 59271312 59271312 G A OR4D11 Silent p.K88K 0.11 TCGA-XF-A9SK-01 11 59599270 59599270 C G GIF Splice_Site p.X358_splice 0.25 TCGA-XF-A9SK-01 11 59828646 59828646 G A MS4A3 Missense_Mutation p.E5K 0.20 tolerated(0.15) benign(0.063) TCGA-XF-A9SK-01 11 62621156 62621156 C G SLC3A2 5'Flank 0.05 TCGA-XF-A9SK-01 11 64540963 64540963 C G SF1 Missense_Mutation p.E184Q 0.38 tolerated(0.06) probably_damaging(0.986) TCGA-XF-A9SK-01 11 65154550 65154550 G A FRMD8 Missense_Mutation p.E15K 0.32 tolerated(0.1) possibly_damaging(0.452) TCGA-XF-A9SK-01 11 66039643 66039643 G T RAB1B Nonsense_Mutation p.E35* 0.15 TCGA-XF-A9SK-01 11 75168777 75168777 C T GDPD5 Silent p.V92V 0.09 TCGA-XF-A9SK-01 11 95504699 95504699 G C FAM76B 3'UTR 0.11 TCGA-XF-A9SK-01 11 9861227 9861227 C G SBF2 Missense_Mutation p.E1091D 0.20 tolerated(0.28) benign(0.002) TCGA-XF-A9SK-01 12 108128285 108128285 T C PRDM4 Missense_Mutation p.K703R 0.36 tolerated(0.17) benign(0.007) TCGA-XF-A9SK-01 12 108642051 108642051 C G WSCD2 Missense_Mutation p.I543M 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SK-01 12 112323737 112323737 C T MAPKAPK5 Missense_Mutation p.P289L 0.33 deleterious(0) possibly_damaging(0.85) TCGA-XF-A9SK-01 12 122614580 122614580 C T MLXIP Silent p.L277L 0.08 TCGA-XF-A9SK-01 12 130649121 130649121 G A FZD10 Missense_Mutation p.R545K 0.08 tolerated(0.18) benign(0.053) TCGA-XF-A9SK-01 12 133197918 133197918 T C P2RX2 Missense_Mutation p.I328T 0.05 deleterious(0) probably_damaging(0.991) TCGA-XF-A9SK-01 12 14834400 14834400 G A GUCY2C Missense_Mutation p.A208V 0.56 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SK-01 12 27841978 27841978 A G PPFIBP1 Missense_Mutation p.M849V 0.11 deleterious(0) possibly_damaging(0.716) TCGA-XF-A9SK-01 12 49433394 49433394 G A KMT2D Nonsense_Mutation p.R2685* 0.25 TCGA-XF-A9SK-01 12 50492581 50492581 C T SMARCD1 Nonsense_Mutation p.R493* 0.19 TCGA-XF-A9SK-01 12 66703945 66703945 G C HELB Missense_Mutation p.E413Q 0.15 deleterious(0.03) possibly_damaging(0.762) TCGA-XF-A9SK-01 12 67703780 67703780 G C CAND1 Missense_Mutation p.R1042T 0.16 deleterious(0) probably_damaging(0.96) TCGA-XF-A9SK-01 12 6958797 6958797 G T CDCA3 Missense_Mutation p.T159K 0.59 tolerated(0.33) benign(0.054) TCGA-XF-A9SK-01 12 75884198 75884198 G T GLIPR1 Missense_Mutation p.D145Y 0.46 tolerated(0.08) probably_damaging(0.926) TCGA-XF-A9SK-01 13 111213777 111213777 G T RAB20 Missense_Mutation p.F30L 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SK-01 13 78163292 78163292 C A SCEL Missense_Mutation p.H187N 0.55 deleterious(0.03) possibly_damaging(0.848) TCGA-XF-A9SK-01 14 20927799 20927799 C T TMEM55B Silent p.K185K 0.19 TCGA-XF-A9SK-01 14 20944709 20944709 G C PNP Missense_Mutation p.Q273H 0.17 deleterious(0.03) benign(0.001) TCGA-XF-A9SK-01 14 24612583 24612591 CATATAGAT - PSME2 3'UTR 0.15 TCGA-XF-A9SK-01 14 74422193 74422193 G C COQ6 Missense_Mutation p.R113T 0.40 tolerated(0.08) benign(0.044) TCGA-XF-A9SK-01 14 74422544 74422544 G C COQ6 Missense_Mutation p.D132H 0.44 deleterious(0.01) probably_damaging(0.928) TCGA-XF-A9SK-01 14 93762412 93762412 C T BTBD7 5'UTR 0.29 TCGA-XF-A9SK-01 15 22925812 22925812 G A CYFIP1 Silent p.A10A 0.20 TCGA-XF-A9SK-01 15 26026180 26026180 C A ATP10A Missense_Mutation p.G214C 0.16 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SK-01 15 41805969 41805969 A G LTK 5'UTR 0.24 TCGA-XF-A9SK-01 15 51980540 51980540 G C SCG3 Missense_Mutation p.E161Q 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9SK-01 15 52517693 52517693 G C MYO5C Missense_Mutation p.Q1082E 0.18 tolerated(0.35) benign(0.012) TCGA-XF-A9SK-01 15 57545626 57545626 G C TCF12 Missense_Mutation p.G476A 0.26 tolerated(0.72) benign(0.06) TCGA-XF-A9SK-01 15 62234019 62234019 G C VPS13C Missense_Mutation p.S1799C 0.23 deleterious(0.02) possibly_damaging(0.572) TCGA-XF-A9SK-01 15 65208072 65208072 G A ANKDD1A Silent p.R37R 0.09 TCGA-XF-A9SK-01 15 65489366 65489366 C T CILP Silent p.T1086T 0.28 TCGA-XF-A9SK-01 15 80430023 80430023 G C ZFAND6 3'UTR 0.31 TCGA-XF-A9SK-01 15 90020801 90020801 G A RHCG Silent p.I353I 0.33 TCGA-XF-A9SK-01 16 10626925 10626925 G C EMP2 Missense_Mutation p.S114C 0.16 deleterious(0) probably_damaging(0.977) TCGA-XF-A9SK-01 16 2140152 2140152 G C PKD1 Missense_Mutation p.S4163C 0.26 probably_damaging(0.998) TCGA-XF-A9SK-01 16 30492809 30492809 C G ITGAL Nonsense_Mutation p.S209* 0.28 TCGA-XF-A9SK-01 16 3350606 3350606 C G TIGD7 Missense_Mutation p.K3N 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-XF-A9SK-01 16 50756530 50756530 C A NOD2 Intron 0.34 TCGA-XF-A9SK-01 16 67381364 67381364 A C LRRC36 Intron 0.17 TCGA-XF-A9SK-01 16 70316654 70316654 G C AARS Missense_Mutation p.L5V 0.13 tolerated(0.09) possibly_damaging(0.459) TCGA-XF-A9SK-01 16 74372750 74372750 G C RP11-252A24.2 RNA 0.17 TCGA-XF-A9SK-01 16 74519764 74519764 G A GLG1 Nonsense_Mutation p.R501* 0.58 TCGA-XF-A9SK-01 17 10432260 10432260 G A MYH2 Missense_Mutation p.S1164L 0.42 tolerated(0.2) possibly_damaging(0.582) TCGA-XF-A9SK-01 17 10728777 10728777 G A PIRT Silent p.G62G 0.52 TCGA-XF-A9SK-01 17 11833358 11833358 C T DNAH9 Missense_Mutation p.P4018L 0.24 probably_damaging(0.986) TCGA-XF-A9SK-01 17 2239710 2239710 G C TSR1 Missense_Mutation p.H4Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SK-01 17 29226501 29226501 G C TEFM Missense_Mutation p.L257V 0.12 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SK-01 17 40817778 40817778 C T TUBG2 Missense_Mutation p.S259L 0.19 deleterious(0.01) benign(0.413) TCGA-XF-A9SK-01 17 48538160 48538160 G A ACSF2 Missense_Mutation p.R84K 0.16 tolerated(0.18) benign(0.011) TCGA-XF-A9SK-01 17 6733698 6733698 G C TEKT1 5'UTR 0.18 TCGA-XF-A9SK-01 17 71410828 71410828 G A SDK2 Silent p.N813N 0.36 TCGA-XF-A9SK-01 17 74006001 74006001 C G EVPL Silent p.L1095L 0.16 TCGA-XF-A9SK-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.17 TCGA-XF-A9SK-01 18 32682099 32682099 C T MAPRE2 Missense_Mutation p.H196Y 0.40 tolerated(1) benign(0.001) TCGA-XF-A9SK-01 19 12221212 12221212 G A ZNF788 Silent p.V52V 0.14 TCGA-XF-A9SK-01 19 13260628 13260628 C A STX10 Missense_Mutation p.R40L 0.31 deleterious(0.01) benign(0.071) TCGA-XF-A9SK-01 19 1556581 1556581 C T MEX3D Missense_Mutation p.D313N 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-XF-A9SK-01 19 15918298 15918298 G A OR10H1 Silent p.L184L 0.33 TCGA-XF-A9SK-01 19 18724930 18724930 T G TMEM59L Nonsense_Mutation p.Y111* 0.26 TCGA-XF-A9SK-01 19 31038924 31038924 C T ZNF536 Nonsense_Mutation p.R800* 0.30 TCGA-XF-A9SK-01 19 33424513 33424513 T C CEP89 Missense_Mutation p.K244E 0.35 deleterious(0.03) benign(0.25) TCGA-XF-A9SK-01 19 41008181 41008181 C T SPTBN4 Silent p.L348L 0.25 TCGA-XF-A9SK-01 19 41704736 41704736 G A CYP2S1 Silent p.L259L 0.36 TCGA-XF-A9SK-01 19 50720992 50720992 G A MYH14 Missense_Mutation p.A176T 0.30 deleterious(0.01) probably_damaging(0.942) TCGA-XF-A9SK-01 19 55441913 55441913 G A NLRP7 Missense_Mutation p.L922F 0.28 deleterious(0.05) possibly_damaging(0.728) TCGA-XF-A9SK-01 19 56423751 56423751 C G NLRP13 Missense_Mutation p.G478R 0.07 tolerated(0.28) benign(0.091) TCGA-XF-A9SK-01 19 9407300 9407300 G A ZNF699 Silent p.F260F 0.18 TCGA-XF-A9SK-01 1 104122148 104122148 A G AMY2B 3'UTR 0.22 TCGA-XF-A9SK-01 1 149900693 149900693 G A MTMR11 3'UTR 0.19 TCGA-XF-A9SK-01 1 158047906 158047906 C T KIRREL Missense_Mutation p.R110W 0.23 deleterious(0) probably_damaging(0.954) TCGA-XF-A9SK-01 1 15894505 15894505 G A DNAJC16 Missense_Mutation p.D728N 0.18 tolerated(0.08) benign(0.305) TCGA-XF-A9SK-01 1 159166873 159166873 C G CADM3 Intron 0.17 TCGA-XF-A9SK-01 1 16274863 16274863 G A ZBTB17 Missense_Mutation p.A43V 0.07 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-XF-A9SK-01 1 171482214 171482214 C G PRRC2C Missense_Mutation p.L63V 0.27 unknown(0) TCGA-XF-A9SK-01 1 186136070 186136070 T C HMCN1 Silent p.C5190C 0.28 TCGA-XF-A9SK-01 1 19441302 19441302 C T UBR4 Intron 0.21 TCGA-XF-A9SK-01 1 200017327 200017327 G A NR5A2 Missense_Mutation p.G164E 0.14 deleterious(0) probably_damaging(1) TCGA-XF-A9SK-01 1 202932290 202932290 C T CYB5R1 Missense_Mutation p.E217K 0.30 deleterious(0.01) benign(0.295) TCGA-XF-A9SK-01 1 204586955 204586955 C G LRRN2 3'UTR 0.31 TCGA-XF-A9SK-01 1 205022373 205022373 C G CNTN2 Silent p.V20V 0.32 TCGA-XF-A9SK-01 1 214814820 214814820 C - CENPF Frame_Shift_Del p.Q1047Rfs*7 0.20 TCGA-XF-A9SK-01 1 226026400 226026400 C T EPHX1 Missense_Mutation p.A137V 0.10 tolerated(0.25) benign(0.197) TCGA-XF-A9SK-01 1 226496865 226496865 C T LIN9 Silent p.L8L 0.23 TCGA-XF-A9SK-01 1 229567777 229567777 G A ACTA1 Missense_Mutation p.R258C 0.18 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-XF-A9SK-01 1 42048050 42048050 C T HIVEP3 Missense_Mutation p.E807K 0.21 probably_damaging(0.993) TCGA-XF-A9SK-01 1 60312757 60312757 G A HOOK1 Missense_Mutation p.E277K 0.11 tolerated(0.07) benign(0.403) TCGA-XF-A9SK-01 1 68512939 68512939 C A DIRAS3 Silent p.L14L 0.33 TCGA-XF-A9SK-01 1 86142945 86142945 A - ZNHIT6 Frame_Shift_Del p.I407Mfs*8 0.23 TCGA-XF-A9SK-01 20 23472475 23472475 C G CST8 Missense_Mutation p.N57K 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SK-01 20 3008457 3008457 G C PTPRA Silent p.V630V 0.17 TCGA-XF-A9SK-01 20 43246970 43246970 C T PKIG Nonsense_Mutation p.Q66* 0.18 TCGA-XF-A9SK-01 20 43247008 43247008 C T PKIG 3'UTR 0.22 TCGA-XF-A9SK-01 20 43247018 43247018 C T PKIG 3'UTR 0.22 TCGA-XF-A9SK-01 20 43247019 43247019 C A PKIG 3'UTR 0.22 TCGA-XF-A9SK-01 20 43248473 43248473 C G ADA 3'UTR 0.28 TCGA-XF-A9SK-01 20 43945416 43945416 G A RBPJL Missense_Mutation p.M457I 0.30 tolerated(0.66) benign(0) TCGA-XF-A9SK-01 20 47267544 47267544 C T PREX1 Missense_Mutation p.R902K 0.21 tolerated(0.36) benign(0) TCGA-XF-A9SK-01 20 49574904 49574904 C G DPM1 Missense_Mutation p.E53Q 0.21 tolerated(0.18) benign(0.042) TCGA-XF-A9SK-01 21 11039397 11039397 C T BAGE2 RNA 0.08 TCGA-XF-A9SK-01 22 19226822 19226822 C G CLTCL1 Missense_Mutation p.Q257H 0.24 deleterious(0.04) benign(0.007) TCGA-XF-A9SK-01 2 120097412 120097412 G A C2orf76 Silent p.L42L 0.18 TCGA-XF-A9SK-01 2 128263003 128263003 G A IWS1 Missense_Mutation p.S159F 0.31 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-XF-A9SK-01 2 131803046 131803046 C T ARHGEF4 Intron 0.20 TCGA-XF-A9SK-01 2 138738934 138738934 A G HNMT Intron 0.25 TCGA-XF-A9SK-01 2 160289395 160289395 G C BAZ2B Missense_Mutation p.F591L 0.13 benign(0.153) TCGA-XF-A9SK-01 2 168103639 168103639 C A XIRP2 Missense_Mutation p.L1913M 0.09 possibly_damaging(0.527) TCGA-XF-A9SK-01 2 171399459 171399459 G A MYO3B Missense_Mutation p.A1207T 0.11 tolerated_low_confidence(0.63) benign(0.001) TCGA-XF-A9SK-01 2 179543552 179543552 C T TTN Missense_Mutation p.E11250K 0.30 TCGA-XF-A9SK-01 2 20647544 20647544 C A RHOB Missense_Mutation p.F106L 0.27 deleterious(0.03) benign(0.363) TCGA-XF-A9SK-01 2 27317761 27317761 C T KHK Intron 0.26 TCGA-XF-A9SK-01 2 38542449 38542449 C G ATL2 Missense_Mutation p.E211Q 0.21 deleterious(0) benign(0.428) TCGA-XF-A9SK-01 2 73678881 73678881 C T ALMS1 Nonsense_Mutation p.Q1742* 0.18 TCGA-XF-A9SK-01 2 9000768 9000768 T C MBOAT2 Missense_Mutation p.I438V 0.19 tolerated(1) benign(0.002) TCGA-XF-A9SK-01 3 101520629 101520629 G A NXPE3 Missense_Mutation p.R215H 0.35 deleterious(0.03) probably_damaging(0.919) TCGA-XF-A9SK-01 3 113376606 113376606 G C KIAA2018 Missense_Mutation p.P1308R 0.11 benign(0.101) TCGA-XF-A9SK-01 3 125032420 125032420 G C ZNF148 Missense_Mutation p.S22C 0.21 tolerated(0.1) possibly_damaging(0.862) TCGA-XF-A9SK-01 3 131100998 131100998 G A NUDT16 Missense_Mutation p.E83K 0.24 tolerated_low_confidence(0.27) benign(0.206) TCGA-XF-A9SK-01 3 183778154 183778154 C T HTR3C 3'UTR 0.12 TCGA-XF-A9SK-01 3 190167578 190167578 G C TMEM207 Missense_Mutation p.F7L 0.45 tolerated(0.69) benign(0.016) TCGA-XF-A9SK-01 3 193044814 193044814 G C ATP13A5 Silent p.L498L 0.16 TCGA-XF-A9SK-01 3 53289969 53289969 G A TKT 5'UTR 0.47 TCGA-XF-A9SK-01 4 123145733 123145733 C G KIAA1109 Missense_Mutation p.F898L 0.26 benign(0.139) TCGA-XF-A9SK-01 4 126242170 126242170 T G FAT4 Missense_Mutation p.L1535R 0.20 possibly_damaging(0.498) TCGA-XF-A9SK-01 4 163032438 163032438 C G FSTL5 Missense_Mutation p.M37I 0.13 tolerated_low_confidence(0.36) benign(0) TCGA-XF-A9SK-01 4 177037064 177037064 G A WDR17 Missense_Mutation p.D105N 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-XF-A9SK-01 4 187005842 187005842 C A TLR3 Missense_Mutation p.L844M 0.32 deleterious(0.03) probably_damaging(0.974) TCGA-XF-A9SK-01 4 39201111 39201111 G C WDR19 Missense_Mutation p.K140N 0.16 deleterious(0) possibly_damaging(0.881) TCGA-XF-A9SK-01 4 81791204 81791204 G T C4orf22 Missense_Mutation p.D148Y 0.40 deleterious(0) probably_damaging(1) TCGA-XF-A9SK-01 5 140710947 140710947 G T PCDHGA1 Silent p.V232V 0.22 TCGA-XF-A9SK-01 5 140724205 140724205 G T PCDHGA3 Missense_Mutation p.R202L 0.38 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-XF-A9SK-01 5 140724206 140724206 T G PCDHGA3 Silent p.R202R 0.42 TCGA-XF-A9SK-01 5 154278781 154278781 C G GEMIN5 Missense_Mutation p.R1035T 0.20 deleterious(0.01) benign(0.131) TCGA-XF-A9SK-01 5 180661962 180661962 C T TRIM41 3'UTR 0.41 TCGA-XF-A9SK-01 5 31538746 31538746 G C C5orf22 Missense_Mutation p.D253H 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A9SK-01 5 38451431 38451431 G C EGFLAM Missense_Mutation p.R861T 0.09 tolerated(0.06) probably_damaging(0.995) TCGA-XF-A9SK-01 6 101095297 101095297 C T ASCC3 Missense_Mutation p.E1095K 0.15 deleterious(0.02) possibly_damaging(0.788) TCGA-XF-A9SK-01 6 11193838 11193838 G A NEDD9 Missense_Mutation p.H183Y 0.33 tolerated(0.37) benign(0.418) TCGA-XF-A9SK-01 6 13977520 13977520 C T RNF182 Missense_Mutation p.S57F 0.15 deleterious(0.01) possibly_damaging(0.73) TCGA-XF-A9SK-01 6 157256609 157256609 C T ARID1B Nonsense_Mutation p.Q646* 0.25 TCGA-XF-A9SK-01 6 2678483 2678483 G A MYLK4 Silent p.F337F 0.20 TCGA-XF-A9SK-01 6 30131459 30131459 G A TRIM15 5'UTR 0.32 TCGA-XF-A9SK-01 6 30522657 30522657 C G GNL1 Missense_Mutation p.E138Q 0.43 tolerated(0.45) benign(0.002) TCGA-XF-A9SK-01 6 30569404 30569404 G C PPP1R10 Missense_Mutation p.F915L 0.17 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9SK-01 6 33131495 33131495 C T COL11A2 Missense_Mutation p.R1638Q 0.28 unknown(0) TCGA-XF-A9SK-01 6 33381015 33381015 G C PHF1 Missense_Mutation p.G127A 0.13 tolerated(0.58) benign(0.18) TCGA-XF-A9SK-01 6 36466216 36466224 CCTTCTTAT - STK38 In_Frame_Del p.Y331_V334delinsL 0.16 TCGA-XF-A9SK-01 6 44197526 44197526 G A SLC29A1 Silent p.Q104Q 0.28 TCGA-XF-A9SK-01 6 64404468 64404468 C T PHF3 Intron 0.26 TCGA-XF-A9SK-01 7 105205877 105205877 G A RINT1 Silent p.E680E 0.36 TCGA-XF-A9SK-01 7 140080134 140080134 G A SLC37A3 Missense_Mutation p.S49F 0.25 tolerated(0.13) probably_damaging(0.925) TCGA-XF-A9SK-01 7 142460325 142460325 G C PRSS1 Silent p.L166L 0.12 TCGA-XF-A9SK-01 7 149148129 149148129 C G ZNF777 Missense_Mutation p.D350H 0.34 deleterious(0.04) probably_damaging(0.984) TCGA-XF-A9SK-01 7 149981866 149981866 G A ACTR3C Silent p.I180I 0.14 TCGA-XF-A9SK-01 7 155094081 155094081 C G INSIG1 Missense_Mutation p.L220V 0.14 tolerated(0.36) benign(0.128) TCGA-XF-A9SK-01 7 1594935 1594935 G A TMEM184A Silent p.F62F 0.27 TCGA-XF-A9SK-01 7 44621076 44621076 C A TMED4 Missense_Mutation p.R120M 0.32 deleterious(0) benign(0.21) TCGA-XF-A9SK-01 7 5104408 5104408 G A RBAK Missense_Mutation p.V441M 0.38 deleterious(0.04) probably_damaging(0.979) TCGA-XF-A9SK-01 7 57529629 57529629 G A ZNF716 Missense_Mutation p.G488R 0.14 tolerated(0.08) benign(0.005) TCGA-XF-A9SK-01 7 91570286 91570286 G T AKAP9 5'UTR 0.35 TCGA-XF-A9SK-01 7 99705619 99705619 G A TAF6 Missense_Mutation p.P566L 0.22 tolerated(0.14) benign(0.003) TCGA-XF-A9SK-01 8 144891738 144891738 C T SCRIB Missense_Mutation p.E561K 0.27 probably_damaging(0.997) TCGA-XF-A9SK-01 8 145757708 145757708 C T ARHGAP39 Silent p.L987L 0.12 TCGA-XF-A9SK-01 8 38373954 38373954 G A C8orf86 Missense_Mutation p.S131F 0.14 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-XF-A9SK-01 8 42129708 42129708 C G IKBKB Missense_Mutation p.I30M 0.30 tolerated(0.06) possibly_damaging(0.646) TCGA-XF-A9SK-01 8 48352894 48352894 C G SPIDR Missense_Mutation p.S296C 0.36 deleterious(0.01) probably_damaging(0.948) TCGA-XF-A9SK-01 8 57876245 57876245 T G IMPAD1 3'UTR 0.10 TCGA-XF-A9SK-01 8 77776757 77776757 G C ZFHX4 Missense_Mutation p.D3603H 0.28 probably_damaging(0.998) TCGA-XF-A9SK-01 8 95690439 95690439 C T ESRP1 Missense_Mutation p.P554S 0.39 deleterious(0.03) probably_damaging(0.994) TCGA-XF-A9SK-01 8 99440302 99440302 C T KCNS2 Missense_Mutation p.S32L 0.21 tolerated(0.65) benign(0.104) TCGA-XF-A9SK-01 9 133780796 133780796 G C FIBCD1 Silent p.L317L 0.33 TCGA-XF-A9SK-01 9 135797295 135797295 A G TSC1 Missense_Mutation p.Y192H 0.48 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SK-01 9 34256478 34256478 C G KIF24 Missense_Mutation p.E1043Q 0.50 deleterious(0.01) possibly_damaging(0.821) TCGA-XF-A9SK-01 9 35853728 35853728 C T TMEM8B Missense_Mutation p.S437F 0.60 tolerated(0.09) benign(0.114) TCGA-XF-A9SK-01 X 110366476 110366476 C T PAK3 Missense_Mutation p.R49C 0.31 tolerated(0.18) probably_damaging(0.961) TCGA-XF-A9SL-01 10 13652141 13652141 G T PRPF18 Missense_Mutation p.D156Y 0.05 deleterious(0) probably_damaging(0.99) TCGA-XF-A9SL-01 10 27459686 27459686 G C MASTL Missense_Mutation p.E600Q 0.07 tolerated(0.06) probably_damaging(0.968) TCGA-XF-A9SL-01 10 29821654 29821654 G A SVIL Silent p.L548L 0.07 TCGA-XF-A9SL-01 10 7768987 7768987 G A ITIH2 Silent p.Q353Q 0.06 TCGA-XF-A9SL-01 11 117988143 117988143 C G TMPRSS4 Missense_Mutation p.L426V 0.10 deleterious(0) probably_damaging(0.98) TCGA-XF-A9SL-01 11 1267661 1267661 C T MUC5B Missense_Mutation p.S3184F 0.05 unknown(0) TCGA-XF-A9SL-01 11 2985074 2985074 G A NAP1L4 Intron 0.03 TCGA-XF-A9SL-01 12 26816713 26816713 C G ITPR2 Missense_Mutation p.D540H 0.03 deleterious(0) possibly_damaging(0.796) TCGA-XF-A9SL-01 12 3647809 3647809 C T PRMT8 Intron 0.06 TCGA-XF-A9SL-01 12 48391689 48391689 C A COL2A1 Nonsense_Mutation p.G132* 0.04 TCGA-XF-A9SL-01 12 56863164 56863164 G C SPRYD4 Missense_Mutation p.E143Q 0.10 tolerated(0.47) benign(0.178) TCGA-XF-A9SL-01 12 57909829 57909829 C G MARS Intron 0.09 TCGA-XF-A9SL-01 12 66641851 66641851 C T IRAK3 Missense_Mutation p.S564F 0.04 tolerated_low_confidence(0.07) benign(0.01) TCGA-XF-A9SL-01 12 85694984 85694984 T C ALX1 Missense_Mutation p.S238P 0.05 tolerated(0.37) probably_damaging(0.997) TCGA-XF-A9SL-01 13 109318281 109318281 G A MYO16 Missense_Mutation p.D4N 0.11 deleterious(0) probably_damaging(0.933) TCGA-XF-A9SL-01 13 26436456 26436456 C T ATP8A2 Silent p.V1031V 0.11 TCGA-XF-A9SL-01 13 28931751 28931751 G C FLT1 Missense_Mutation p.H730D 0.05 tolerated(0.21) benign(0.158) TCGA-XF-A9SL-01 13 92560230 92560230 G A GPC5 Silent p.Q440Q 0.11 TCGA-XF-A9SL-01 13 94482624 94482624 G T GPC6 Missense_Mutation p.Q179H 0.06 deleterious(0) benign(0.078) TCGA-XF-A9SL-01 14 101447391 101447391 T A SNORD114-20 RNA 0.08 TCGA-XF-A9SL-01 14 101526925 101526925 C G MIR496 RNA 0.06 TCGA-XF-A9SL-01 14 105936422 105936422 C A MTA1 Nonsense_Mutation p.S673* 0.11 TCGA-XF-A9SL-01 14 45673649 45673649 G C MIS18BP1 Missense_Mutation p.T1083S 0.05 tolerated(0.17) benign(0.303) TCGA-XF-A9SL-01 15 86261238 86261238 G A AKAP13 Missense_Mutation p.G1954E 0.05 deleterious(0) probably_damaging(1) TCGA-XF-A9SL-01 15 90321401 90321401 A G MESP2 Missense_Mutation p.S344G 0.09 tolerated_low_confidence(0.57) benign(0.001) TCGA-XF-A9SL-01 16 15129938 15129938 C G PDXDC1 Missense_Mutation p.H725D 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.597) TCGA-XF-A9SL-01 16 21030959 21030959 G C DNAH3 Missense_Mutation p.I2003M 0.06 tolerated(0.06) benign(0.364) TCGA-XF-A9SL-01 16 23641527 23641527 C G PALB2 Missense_Mutation p.E650Q 0.06 tolerated(0.1) benign(0.221) TCGA-XF-A9SL-01 16 3432731 3432731 C G ZSCAN32 3'UTR 0.08 TCGA-XF-A9SL-01 16 4935762 4935762 T G PPL Missense_Mutation p.Q965P 0.05 deleterious(0.03) benign(0.397) TCGA-XF-A9SL-01 16 50353921 50353921 G C BRD7 Missense_Mutation p.L594V 0.06 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SL-01 17 1340249 1340249 C G CRK Missense_Mutation p.E148Q 0.04 tolerated(0.55) benign(0.037) TCGA-XF-A9SL-01 17 42295583 42295583 G A UBTF Silent p.A5A 0.04 TCGA-XF-A9SL-01 17 67519677 67519677 C T MAP2K6 Silent p.L186L 0.05 TCGA-XF-A9SL-01 17 73870740 73870740 G A TRIM47 Missense_Mutation p.R581C 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-XF-A9SL-01 17 973270 973270 G A ABR Missense_Mutation p.R319W 0.10 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SL-01 18 29444610 29444610 C G TRAPPC8 Missense_Mutation p.E909Q 0.06 tolerated(0.06) benign(0.391) TCGA-XF-A9SL-01 18 32920382 32920382 C A ZNF24 Missense_Mutation p.R78L 0.04 tolerated(0.13) possibly_damaging(0.569) TCGA-XF-A9SL-01 18 9256978 9256978 C G ANKRD12 Nonsense_Mutation p.S1238* 0.05 TCGA-XF-A9SL-01 18 9257973 9257973 C G ANKRD12 Missense_Mutation p.Q1570E 0.06 tolerated_low_confidence(0.22) benign(0.002) TCGA-XF-A9SL-01 18 9954069 9954069 G C VAPA Missense_Mutation p.R249T 0.07 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SL-01 19 12541868 12541868 C T ZNF443 Missense_Mutation p.G373D 0.05 deleterious(0.05) probably_damaging(0.988) TCGA-XF-A9SL-01 19 39998504 39998504 G A DLL3 Missense_Mutation p.D570N 0.06 tolerated(0.1) probably_damaging(0.989) TCGA-XF-A9SL-01 19 41096879 41096879 C G SHKBP1 Intron 0.19 TCGA-XF-A9SL-01 19 46308269 46308269 C T RSPH6A Silent p.E298E 0.15 TCGA-XF-A9SL-01 19 49254216 49254216 C T FUT1 Missense_Mutation p.R108H 0.12 tolerated(0.16) probably_damaging(0.984) TCGA-XF-A9SL-01 19 52633817 52633817 C T ZNF616 5'UTR 0.05 TCGA-XF-A9SL-01 19 5622601 5622601 C T SAFB2 Silent p.L42L 0.17 TCGA-XF-A9SL-01 1 109815501 109815501 G A CELSR2 Silent p.Q2730Q 0.07 TCGA-XF-A9SL-01 1 15978264 15978264 C G DDI2 Missense_Mutation p.L353V 0.10 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SL-01 1 160328014 160328014 G C NCSTN Missense_Mutation p.D695H 0.06 tolerated(0.05) possibly_damaging(0.479) TCGA-XF-A9SL-01 1 200586815 200586815 G C KIF14 Missense_Mutation p.S346C 0.04 tolerated(0.26) benign(0.002) TCGA-XF-A9SL-01 1 205238562 205238562 C G TMCC2 Missense_Mutation p.S411C 0.07 deleterious(0) possibly_damaging(0.652) TCGA-XF-A9SL-01 1 215793545 215793545 G A KCTD3 Missense_Mutation p.R678K 0.09 tolerated_low_confidence(0.31) benign(0.002) TCGA-XF-A9SL-01 1 248525637 248525637 T C OR2T4 Missense_Mutation p.L252P 0.07 tolerated(0.12) possibly_damaging(0.866) TCGA-XF-A9SL-01 1 34089025 34089025 C A CSMD2 Silent p.S1849S 0.11 TCGA-XF-A9SL-01 1 36212457 36212457 G A CLSPN Nonsense_Mutation p.Q922* 0.04 TCGA-XF-A9SL-01 1 53108627 53108627 C G FAM159A Missense_Mutation p.S92C 0.07 deleterious(0) probably_damaging(0.912) TCGA-XF-A9SL-01 1 9307028 9307028 G A H6PD Missense_Mutation p.V211M 0.04 deleterious(0) probably_damaging(1) TCGA-XF-A9SL-01 20 57569211 57569211 T C NELFCD Missense_Mutation p.L561P 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-XF-A9SL-01 20 60963483 60963483 C T RPS21 Intron 0.06 TCGA-XF-A9SL-01 2 166535317 166535317 C T CSRNP3 Missense_Mutation p.T271I 0.06 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SL-01 2 168101332 168101332 G A XIRP2 Missense_Mutation p.E1144K 0.08 possibly_damaging(0.652) TCGA-XF-A9SL-01 2 170531120 170531120 C G CCDC173 Missense_Mutation p.E210Q 0.05 tolerated(0.15) benign(0.309) TCGA-XF-A9SL-01 2 172641881 172641881 G A SLC25A12 Missense_Mutation p.A647V 0.05 deleterious(0.05) probably_damaging(0.968) TCGA-XF-A9SL-01 2 32768541 32768541 G A BIRC6 Silent p.L4175L 0.04 TCGA-XF-A9SL-01 2 74907353 74907353 A G SEMA4F 3'UTR 0.06 TCGA-XF-A9SL-01 2 85554325 85554325 T C TGOLN2 Missense_Mutation p.D177G 0.07 tolerated(0.17) probably_damaging(0.981) TCGA-XF-A9SL-01 2 89265853 89265853 G C IGKV1-6 Missense_Mutation p.F93L 0.03 deleterious(0) possibly_damaging(0.689) TCGA-XF-A9SL-01 3 141248610 141248610 C A RASA2 Nonsense_Mutation p.S139* 0.05 TCGA-XF-A9SL-01 3 184100617 184100617 G C CHRD Intron 0.10 TCGA-XF-A9SL-01 3 195492180 195492180 G A MUC4 Nonsense_Mutation p.Q4587* 0.13 TCGA-XF-A9SL-01 3 195517216 195517216 A T MUC4 Missense_Mutation p.L412Q 0.06 unknown(0) TCGA-XF-A9SL-01 3 197495409 197495409 G A FYTTD1 Missense_Mutation p.G112E 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-XF-A9SL-01 3 27349406 27349406 G C NEK10 Silent p.L249L 0.12 TCGA-XF-A9SL-01 3 38991657 38991657 T C SCN11A Missense_Mutation p.Y66C 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SL-01 3 51979099 51979099 G C PARP3 Silent p.L247L 0.06 TCGA-XF-A9SL-01 3 58194031 58194031 G A DNASE1L3 Silent p.V48V 0.06 TCGA-XF-A9SL-01 3 58260453 58260453 G A ABHD6 Missense_Mutation p.E198K 0.12 tolerated(0.7) benign(0.014) TCGA-XF-A9SL-01 3 75477042 75477042 G A FAM86DP RNA 0.13 TCGA-XF-A9SL-01 4 124177327 124177327 G A SPATA5 Missense_Mutation p.G833R 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SL-01 4 1805519 1805519 C A FGFR3 Intron 0.06 TCGA-XF-A9SL-01 4 1805533 1805533 C G FGFR3 Intron 0.07 TCGA-XF-A9SL-01 4 20620538 20620538 G C SLIT2 Missense_Mutation p.R1499P 0.05 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SL-01 4 57244339 57244339 T C AASDH Missense_Mutation p.I215V 0.06 tolerated(0.07) benign(0.311) TCGA-XF-A9SL-01 4 57829794 57829794 C T NOA1 Missense_Mutation p.R640K 0.08 tolerated(0.52) benign(0.005) TCGA-XF-A9SL-01 5 109202807 109202807 G C MAN2A1 3'UTR 0.14 TCGA-XF-A9SL-01 5 140175755 140175755 G A PCDHA2 Silent p.K402K 0.03 TCGA-XF-A9SL-01 5 14601153 14601153 G A FAM105A Silent p.V48V 0.04 TCGA-XF-A9SL-01 5 148730702 148730702 G A GRPEL2 Missense_Mutation p.E179K 0.06 deleterious(0) probably_damaging(0.917) TCGA-XF-A9SL-01 5 179004088 179004088 G C RUFY1 Missense_Mutation p.D281H 0.09 deleterious(0.01) possibly_damaging(0.823) TCGA-XF-A9SL-01 5 35759759 35759759 G A SPEF2 Silent p.K1186K 0.07 TCGA-XF-A9SL-01 5 72875896 72875896 G C UTP15 Missense_Mutation p.E512Q 0.06 tolerated_low_confidence(0.06) benign(0.005) TCGA-XF-A9SL-01 6 152265421 152265421 T C ESR1 Missense_Mutation p.W292R 0.10 tolerated(0.4) possibly_damaging(0.682) TCGA-XF-A9SL-01 6 31631940 31631940 G A GPANK1 Missense_Mutation p.H106Y 0.07 tolerated(0.28) benign(0.054) TCGA-XF-A9SL-01 6 33288595 33288595 A T DAXX Missense_Mutation p.D319E 0.08 tolerated(0.92) benign(0.193) TCGA-XF-A9SL-01 6 41059368 41059368 C T NFYA Nonsense_Mutation p.Q217* 0.05 TCGA-XF-A9SL-01 6 49419397 49419397 T C MUT Missense_Mutation p.I372V 0.07 tolerated_low_confidence(0.38) benign(0.001) TCGA-XF-A9SL-01 6 63995494 63995494 G C LGSN Missense_Mutation p.Q110E 0.07 tolerated(0.22) benign(0.006) TCGA-XF-A9SL-01 7 100884114 100884114 G C FIS1 Silent p.L84L 0.06 TCGA-XF-A9SL-01 7 107398861 107398861 C G CBLL1 Missense_Mutation p.I238M 0.06 tolerated(0.19) benign(0.151) TCGA-XF-A9SL-01 7 138255747 138255747 A G TRIM24 Missense_Mutation p.D626G 0.06 deleterious(0) benign(0.218) TCGA-XF-A9SL-01 7 140258001 140258001 G C DENND2A Nonsense_Mutation p.S634* 0.06 TCGA-XF-A9SL-01 7 156756698 156756698 G A NOM1 Missense_Mutation p.D671N 0.06 deleterious(0) possibly_damaging(0.86) TCGA-XF-A9SL-01 7 17369630 17369630 G C AHR Missense_Mutation p.E169Q 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9SL-01 7 39612192 39612192 G C YAE1D1 Missense_Mutation p.E190Q 0.09 tolerated(0.45) benign(0.056) TCGA-XF-A9SL-01 7 44186205 44186205 G C GCK Silent p.L293L 0.11 TCGA-XF-A9SL-01 8 10468297 10468297 G A RP1L1 Missense_Mutation p.S1104F 0.09 possibly_damaging(0.902) TCGA-XF-A9SL-01 8 120598530 120598530 A G ENPP2 Silent p.F473F 0.06 TCGA-XF-A9SL-01 8 72938262 72938262 A G TRPA1 Missense_Mutation p.L995P 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SL-01 9 107513395 107513395 G C NIPSNAP3A Missense_Mutation p.W73C 0.04 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SL-01 9 128064597 128064597 G A GAPVD1 Missense_Mutation p.G174E 0.04 deleterious(0) probably_damaging(1) TCGA-XF-A9SL-01 9 136384127 136384127 C T TMEM8C Missense_Mutation p.E90K 0.06 tolerated(0.25) probably_damaging(0.971) TCGA-XF-A9SL-01 9 21187417 21187417 C G IFNA4 Missense_Mutation p.L38F 0.04 tolerated(0.16) possibly_damaging(0.57) TCGA-XF-A9SL-01 9 5774009 5774009 C T KIAA1432 Silent p.L1345L 0.09 TCGA-XF-A9SL-01 X 109697476 109697476 C G RGAG1 Missense_Mutation p.L1211V 0.10 tolerated_low_confidence(0.17) benign(0.084) TCGA-XF-A9SL-01 X 129339310 129339310 G C ZNF280C Missense_Mutation p.Q708E 0.12 tolerated(0.48) benign(0.013) TCGA-XF-A9SL-01 X 153760677 153760678 TC - G6PD Splice_Site p.X460_splice 0.15 TCGA-XF-A9SL-01 X 57313383 57313383 G T FAAH2 Missense_Mutation p.R42L 0.13 tolerated(0.19) benign(0.004) TCGA-XF-A9SL-01 X 77393572 77393572 C T TAF9B Missense_Mutation p.D53N 0.13 deleterious(0.04) possibly_damaging(0.808) TCGA-XF-A9SL-01 X 7870136 7870136 A G PNPLA4 Missense_Mutation p.V175A 0.09 tolerated(0.25) benign(0.007) TCGA-XF-A9SM-01 10 104176536 104176536 G A PSD Missense_Mutation p.S87L 0.11 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-XF-A9SM-01 10 118360682 118360682 C T PNLIPRP1 Silent p.F344F 0.12 TCGA-XF-A9SM-01 10 15107623 15107623 C T OLAH Missense_Mutation p.S201L 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-XF-A9SM-01 10 18962939 18962939 C G ARL5B Missense_Mutation p.I122M 0.15 deleterious(0) probably_damaging(0.951) TCGA-XF-A9SM-01 10 28903528 28903528 G T WAC Silent p.V490V 0.17 TCGA-XF-A9SM-01 10 43089893 43089893 C T ZNF33B Missense_Mutation p.E169K 0.09 tolerated(0.42) benign(0.012) TCGA-XF-A9SM-01 10 71855428 71855428 G A H2AFY2 Missense_Mutation p.D203N 0.10 tolerated(0.07) benign(0.087) TCGA-XF-A9SM-01 10 75559895 75559895 G C ZSWIM8 Missense_Mutation p.E1598Q 0.12 tolerated(0.24) benign(0.032) TCGA-XF-A9SM-01 10 85981948 85981948 C T LRIT2 Missense_Mutation p.E461K 0.15 tolerated(0.06) benign(0.065) TCGA-XF-A9SM-01 10 860928 860928 G T LARP4B Nonsense_Mutation p.S593* 0.27 TCGA-XF-A9SM-01 11 118371720 118371720 G A KMT2A Nonsense_Mutation p.W2059* 0.16 TCGA-XF-A9SM-01 11 118772178 118772178 C T BCL9L Silent p.L758L 0.11 TCGA-XF-A9SM-01 11 124747180 124747180 G C ROBO3 Missense_Mutation p.E941Q 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-XF-A9SM-01 11 18319125 18319125 C T HPS5 Missense_Mutation p.R435K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SM-01 11 27379033 27379033 C T CCDC34 Missense_Mutation p.E139K 0.09 deleterious(0.05) benign(0.063) TCGA-XF-A9SM-01 11 3846224 3846224 G C PGAP2 Intron 0.10 TCGA-XF-A9SM-01 11 44957160 44957160 G A TP53I11 Nonsense_Mutation p.R130* 0.21 TCGA-XF-A9SM-01 11 56344681 56344681 C G OR5M10 Missense_Mutation p.E173Q 0.13 tolerated(0.5) possibly_damaging(0.901) TCGA-XF-A9SM-01 11 61548735 61548735 C G MYRF Missense_Mutation p.L900V 0.20 tolerated(0.28) benign(0.009) TCGA-XF-A9SM-01 11 62296260 62296260 C T AHNAK Missense_Mutation p.V1877M 0.10 possibly_damaging(0.781) TCGA-XF-A9SM-01 11 63885422 63885422 G T FLRT1 Silent p.V561V 0.21 TCGA-XF-A9SM-01 11 64037703 64037703 C A BAD Missense_Mutation p.G162V 0.10 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-XF-A9SM-01 11 64084559 64084559 G C TRMT112 Missense_Mutation p.L81V 0.29 deleterious(0) probably_damaging(0.941) TCGA-XF-A9SM-01 11 64884137 64884137 C T ZNHIT2 Missense_Mutation p.R330Q 0.15 tolerated(0.12) possibly_damaging(0.805) TCGA-XF-A9SM-01 11 64884146 64884146 C T ZNHIT2 Missense_Mutation p.R327K 0.12 tolerated(1) benign(0.004) TCGA-XF-A9SM-01 11 65417106 65417106 C T SIPA1 Missense_Mutation p.S867L 0.05 tolerated(0.27) benign(0) TCGA-XF-A9SM-01 11 66276567 66276567 C G DPP3 Missense_Mutation p.L687V 0.13 tolerated(0.19) benign(0.001) TCGA-XF-A9SM-01 11 76062190 76062190 C A PRKRIR Silent p.L668L 0.14 TCGA-XF-A9SM-01 11 95582905 95582905 G A MTMR2 Missense_Mutation p.S309F 0.08 deleterious(0) possibly_damaging(0.856) TCGA-XF-A9SM-01 12 121878649 121878649 G T KDM2B Missense_Mutation p.L1194I 0.26 tolerated(0.08) benign(0.345) TCGA-XF-A9SM-01 12 122837305 122837305 C G CLIP1 Missense_Mutation p.E446Q 0.28 deleterious(0) probably_damaging(0.985) TCGA-XF-A9SM-01 12 122837326 122837326 C T CLIP1 Missense_Mutation p.E439K 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-XF-A9SM-01 12 124349173 124349173 C G DNAH10 Missense_Mutation p.L2196V 0.07 possibly_damaging(0.557) TCGA-XF-A9SM-01 12 125591757 125591757 C T AACS Silent p.F286F 0.09 TCGA-XF-A9SM-01 12 12870983 12870996 AGAGGGCAAGTACG - CDKN1B Frame_Shift_Del p.E71Vfs*49 0.18 TCGA-XF-A9SM-01 12 130926714 130926714 C T RIMBP2 Missense_Mutation p.D378N 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SM-01 12 133208978 133208978 C T POLE Missense_Mutation p.E2085K 0.27 tolerated(0.48) benign(0.001) TCGA-XF-A9SM-01 12 28458687 28458687 A G CCDC91 Missense_Mutation p.E72G 0.12 tolerated(0.27) benign(0.009) TCGA-XF-A9SM-01 12 49579389 49579389 C G TUBA1A Missense_Mutation p.E254Q 0.09 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-XF-A9SM-01 12 49580200 49580200 C G TUBA1A Missense_Mutation p.E90Q 0.09 deleterious_low_confidence(0.05) benign(0.23) TCGA-XF-A9SM-01 12 53207390 53207390 G C KRT4 Missense_Mutation p.F151L 0.16 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SM-01 12 53237915 53237915 G C KRT78 Missense_Mutation p.Q337E 0.14 deleterious(0.01) benign(0.243) TCGA-XF-A9SM-01 12 53722332 53722332 G A SP7 Silent p.I298I 0.21 TCGA-XF-A9SM-01 12 56996630 56996630 G A BAZ2A Silent p.F1099F 0.36 TCGA-XF-A9SM-01 12 57869669 57869669 C G ARHGAP9 Missense_Mutation p.E420Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9SM-01 12 58145064 58145064 C T CDK4 Missense_Mutation p.E94K 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SM-01 12 67696264 67696264 G C CAND1 Missense_Mutation p.E388Q 0.09 deleterious(0.02) probably_damaging(0.973) TCGA-XF-A9SM-01 12 71960661 71960661 G T LGR5 Missense_Mutation p.V347F 0.11 tolerated(0.16) possibly_damaging(0.519) TCGA-XF-A9SM-01 12 81536964 81536964 C T ACSS3 Missense_Mutation p.P287S 0.10 tolerated(0.21) benign(0.078) TCGA-XF-A9SM-01 12 96400178 96400178 C G LTA4H Missense_Mutation p.D482H 0.20 tolerated(0.07) benign(0.017) TCGA-XF-A9SM-01 12 97051864 97051864 C G C12orf55 Missense_Mutation p.Q1769E 0.14 deleterious(0.01) benign(0.062) TCGA-XF-A9SM-01 13 21620025 21620025 C T LATS2 Silent p.L47L 0.29 TCGA-XF-A9SM-01 13 26787949 26787949 G A RNF6 3'UTR 0.10 TCGA-XF-A9SM-01 13 48919281 48919281 C G RB1 Nonsense_Mutation p.S149* 0.20 TCGA-XF-A9SM-01 13 50204892 50204892 C T ARL11 Silent p.L103L 0.17 TCGA-XF-A9SM-01 14 102486368 102486368 G A DYNC1H1 Missense_Mutation p.E2828K 0.11 probably_damaging(1) TCGA-XF-A9SM-01 14 105404438 105404438 C T AHNAK2 Missense_Mutation p.E5784K 0.21 benign(0.028) TCGA-XF-A9SM-01 14 107282933 107282933 G C IGHV7-81 Missense_Mutation p.F70L 0.09 deleterious(0.01) benign(0) TCGA-XF-A9SM-01 14 20248624 20248624 C T OR4M1 Missense_Mutation p.T48I 0.06 tolerated(0.08) possibly_damaging(0.585) TCGA-XF-A9SM-01 14 21469393 21469393 C T SLC39A2 Silent p.L195L 0.07 TCGA-XF-A9SM-01 14 21993551 21993551 G A SALL2 Missense_Mutation p.S104F 0.11 deleterious(0.01) benign(0.332) TCGA-XF-A9SM-01 14 23793563 23793563 C G PABPN1 Intron 0.20 TCGA-XF-A9SM-01 14 24884780 24884780 C T NYNRIN Silent p.L1275L 0.15 TCGA-XF-A9SM-01 14 31598196 31598196 C T HECTD1 Missense_Mutation p.E1461K 0.15 tolerated(0.51) benign(0.002) TCGA-XF-A9SM-01 14 35234010 35234010 C A BAZ1A Missense_Mutation p.D1227Y 0.19 deleterious_low_confidence(0.01) benign(0.36) TCGA-XF-A9SM-01 14 65507601 65507601 C T FNTB Silent p.L262L 0.08 TCGA-XF-A9SM-01 14 68233027 68233027 C T ZFYVE26 Silent p.T1976T 0.22 TCGA-XF-A9SM-01 15 101589897 101589897 G A LRRK1 Missense_Mutation p.M1116I 0.06 tolerated(1) benign(0) TCGA-XF-A9SM-01 15 22861907 22861907 G C TUBGCP5 Missense_Mutation p.D643H 0.08 deleterious(0) probably_damaging(0.981) TCGA-XF-A9SM-01 15 37184282 37184282 A C MEIS2 3'UTR 0.09 TCGA-XF-A9SM-01 15 37184305 37184305 C G MEIS2 3'UTR 0.07 TCGA-XF-A9SM-01 15 43351354 43351354 C G UBR1 Missense_Mutation p.R341T 0.09 tolerated(0.07) benign(0.001) TCGA-XF-A9SM-01 15 44120502 44120502 C T WDR76 Missense_Mutation p.L134F 0.14 tolerated(0.19) benign(0.004) TCGA-XF-A9SM-01 15 50152651 50152651 G C ATP8B4 Missense_Mutation p.Q1107E 0.15 tolerated(0.7) benign(0.002) TCGA-XF-A9SM-01 15 52539115 52539115 C T MYO5C Missense_Mutation p.E660K 0.10 tolerated(0.54) possibly_damaging(0.7) TCGA-XF-A9SM-01 15 64673607 64673607 G T KIAA0101 5'UTR 0.11 TCGA-XF-A9SM-01 15 65208100 65208100 G C ANKDD1A Splice_Site p.X46_splice 0.16 TCGA-XF-A9SM-01 15 65946447 65946447 G A SLC24A1 3'UTR 0.18 TCGA-XF-A9SM-01 15 69238625 69238625 G C SPESP1 Missense_Mutation p.R251T 0.12 deleterious(0) probably_damaging(0.943) TCGA-XF-A9SM-01 15 72691086 72691086 G A TMEM202 Silent p.T58T 0.15 TCGA-XF-A9SM-01 15 85476467 85476467 C A SLC28A1 Missense_Mutation p.S392Y 0.06 deleterious(0) probably_damaging(0.983) TCGA-XF-A9SM-01 16 10862999 10862999 G A NUBP1 3'UTR 0.44 TCGA-XF-A9SM-01 16 15141340 15141340 C A NTAN1 Missense_Mutation p.M106I 0.17 tolerated(0.3) benign(0.001) TCGA-XF-A9SM-01 16 27788330 27788330 C T KIAA0556 Nonsense_Mutation p.R1511* 0.13 TCGA-XF-A9SM-01 16 2815271 2815271 C T SRRM2 Missense_Mutation p.S1581L 0.09 benign(0.184) TCGA-XF-A9SM-01 16 28841315 28841315 G C ATXN2L Missense_Mutation p.E324Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SM-01 16 28854120 28854120 C T TUFM 3'UTR 0.30 TCGA-XF-A9SM-01 16 30721266 30721266 G C SRCAP Missense_Mutation p.Q317H 0.11 unknown(0) TCGA-XF-A9SM-01 16 30750002 30750002 C G SRCAP Missense_Mutation p.P2881A 0.16 unknown(0) TCGA-XF-A9SM-01 16 49433105 49433105 G C C16orf78 Missense_Mutation p.M238I 0.20 deleterious(0.01) benign(0.026) TCGA-XF-A9SM-01 16 49672222 49672222 G T ZNF423 Missense_Mutation p.H281N 0.11 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SM-01 16 49672247 49672247 G A ZNF423 Silent p.F272F 0.13 TCGA-XF-A9SM-01 16 50357509 50357509 C G BRD7 Missense_Mutation p.E478Q 0.10 tolerated(0.16) possibly_damaging(0.766) TCGA-XF-A9SM-01 16 53514499 53514499 G T RBL2 Missense_Mutation p.V968F 0.23 tolerated(0.1) benign(0.195) TCGA-XF-A9SM-01 16 56396588 56396588 C G AMFR 3'UTR 0.21 TCGA-XF-A9SM-01 16 56857751 56857751 G C NUP93 Missense_Mutation p.E263Q 0.16 deleterious(0.04) possibly_damaging(0.492) TCGA-XF-A9SM-01 16 57792700 57792700 G A KIFC3 3'UTR 0.18 TCGA-XF-A9SM-01 16 67575861 67575861 C T FAM65A Missense_Mutation p.S411L 0.09 deleterious(0) possibly_damaging(0.453) TCGA-XF-A9SM-01 16 71008186 71008186 C G HYDIN Missense_Mutation p.D1643H 0.24 probably_damaging(0.996) TCGA-XF-A9SM-01 16 71807214 71807214 G T AP1G1 Silent p.L126L 0.13 TCGA-XF-A9SM-01 16 72153916 72153916 C G PMFBP1 Missense_Mutation p.K947N 0.09 deleterious(0) possibly_damaging(0.888) TCGA-XF-A9SM-01 16 75675477 75675477 C G KARS Missense_Mutation p.E97D 0.19 tolerated(0.29) benign(0.045) TCGA-XF-A9SM-01 16 83999371 83999371 C T OSGIN1 Missense_Mutation p.S398F 0.17 deleterious(0) probably_damaging(0.987) TCGA-XF-A9SM-01 16 89776195 89776195 C A VPS9D1 Missense_Mutation p.A460S 0.11 deleterious(0.01) possibly_damaging(0.676) TCGA-XF-A9SM-01 16 89776196 89776196 C A VPS9D1 Silent p.L459L 0.11 TCGA-XF-A9SM-01 17 10531919 10531919 C G MYH3 3'UTR 0.18 TCGA-XF-A9SM-01 17 28380717 28380717 C G EFCAB5 Nonsense_Mutation p.S582* 0.21 TCGA-XF-A9SM-01 17 2867287 2867287 C T RAP1GAP2 Silent p.L139L 0.22 TCGA-XF-A9SM-01 17 35936484 35936484 G C SYNRG Missense_Mutation p.Q286E 0.12 deleterious(0.01) probably_damaging(0.939) TCGA-XF-A9SM-01 17 36489229 36489229 C T GPR179 Missense_Mutation p.E648K 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SM-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.29 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SM-01 17 40042550 40042550 G C ACLY Missense_Mutation p.I629M 0.15 tolerated(0.06) possibly_damaging(0.788) TCGA-XF-A9SM-01 17 40715322 40715322 G C COASY Missense_Mutation p.D257H 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9SM-01 17 46030236 46030236 C G PRR15L 3'UTR 0.56 TCGA-XF-A9SM-01 17 46690726 46690726 G A HOXB8 Silent p.V190V 0.11 TCGA-XF-A9SM-01 17 4795963 4795963 C T MINK1 Silent p.L737L 0.16 TCGA-XF-A9SM-01 17 49133775 49133775 C T SPAG9 Missense_Mutation p.E165K 0.27 deleterious(0) benign(0.336) TCGA-XF-A9SM-01 17 56276514 56276514 G A EPX Missense_Mutation p.D412N 0.38 deleterious(0.02) benign(0.021) TCGA-XF-A9SM-01 17 71232313 71232313 C T C17orf80 Missense_Mutation p.S231F 0.32 deleterious(0) probably_damaging(0.989) TCGA-XF-A9SM-01 17 74077356 74077356 C T ZACN Intron 0.31 TCGA-XF-A9SM-01 17 74307645 74307645 C T PRPSAP1 Missense_Mutation p.R379Q 0.21 tolerated(0.06) possibly_damaging(0.476) TCGA-XF-A9SM-01 17 74527171 74527171 G A CYGB Silent p.F143F 0.21 TCGA-XF-A9SM-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.18 deleterious(0) probably_damaging(1) TCGA-XF-A9SM-01 17 8139168 8139168 C T CTC1 Missense_Mutation p.R396Q 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SM-01 18 13071095 13071095 C T CEP192 Silent p.G1744G 0.15 TCGA-XF-A9SM-01 18 23873398 23873398 C T TAF4B Silent p.L579L 0.14 TCGA-XF-A9SM-01 18 2739443 2739443 G A SMCHD1 Missense_Mutation p.E1147K 0.11 tolerated(0.06) benign(0.242) TCGA-XF-A9SM-01 18 44260223 44260223 G A ST8SIA5 Silent p.L305L 0.07 TCGA-XF-A9SM-01 18 60015412 60015412 G C TNFRSF11A Missense_Mutation p.Q29H 0.16 deleterious(0) probably_damaging(0.935) TCGA-XF-A9SM-01 18 63547879 63547879 G C CDH7 Missense_Mutation p.D703H 0.14 deleterious(0) benign(0.035) TCGA-XF-A9SM-01 18 9533819 9533819 C G RALBP1 Missense_Mutation p.L566V 0.06 tolerated(0.09) benign(0.071) TCGA-XF-A9SM-01 19 1044664 1044664 C T ABCA7 Missense_Mutation p.P379L 0.12 deleterious(0.05) benign(0.03) TCGA-XF-A9SM-01 19 11513144 11513144 G T RGL3 Missense_Mutation p.P439Q 0.09 tolerated(0.48) probably_damaging(0.994) TCGA-XF-A9SM-01 19 18368240 18368240 G C KIAA1683 Missense_Mutation p.S1285C 0.12 tolerated(0.34) benign(0) TCGA-XF-A9SM-01 19 23542761 23542761 G C ZNF91 Nonsense_Mutation p.S1007* 0.13 TCGA-XF-A9SM-01 19 23941608 23941608 C T ZNF681 5'UTR 0.06 TCGA-XF-A9SM-01 19 24309664 24309664 C T ZNF254 Missense_Mutation p.H288Y 0.09 deleterious(0.03) benign(0.216) TCGA-XF-A9SM-01 19 33349388 33349388 G A SLC7A9 Missense_Mutation p.S312L 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-XF-A9SM-01 19 33639698 33639698 C T WDR88 Silent p.T187T 0.11 TCGA-XF-A9SM-01 19 36297420 36297420 C T PRODH2 Missense_Mutation p.G381S 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9SM-01 19 36388550 36388550 C G NFKBID Intron 0.13 TCGA-XF-A9SM-01 19 44611924 44611924 G C ZNF224 Missense_Mutation p.E537D 0.08 deleterious(0.04) benign(0.07) TCGA-XF-A9SM-01 19 49013407 49013407 C T LMTK3 Silent p.E107E 0.12 TCGA-XF-A9SM-01 19 50360994 50360994 C G PTOV1 Silent p.V253V 0.18 TCGA-XF-A9SM-01 19 50367478 50367478 C G PNKP Missense_Mutation p.E198D 0.15 tolerated(0.16) benign(0.043) TCGA-XF-A9SM-01 19 51133423 51133423 G A SYT3 Missense_Mutation p.P227L 0.36 tolerated(0.18) benign(0.04) TCGA-XF-A9SM-01 19 51920086 51920086 C T SIGLEC10 Nonsense_Mutation p.W180* 0.14 TCGA-XF-A9SM-01 19 5210810 5210810 C T PTPRS Silent p.Q1747Q 0.14 TCGA-XF-A9SM-01 19 53304827 53304827 C G ZNF28 Missense_Mutation p.E91Q 0.22 tolerated(1) possibly_damaging(0.477) TCGA-XF-A9SM-01 19 549733 549733 C A GZMM Missense_Mutation p.A239D 0.11 deleterious(0.02) possibly_damaging(0.903) TCGA-XF-A9SM-01 19 58966785 58966785 C T ZNF324B Silent p.I158I 0.11 TCGA-XF-A9SM-01 19 8153018 8153018 C A FBN3 Missense_Mutation p.C2141F 0.13 deleterious(0) probably_damaging(0.976) TCGA-XF-A9SM-01 19 8153019 8153019 A T FBN3 Missense_Mutation p.C2141S 0.13 deleterious(0) probably_damaging(0.936) TCGA-XF-A9SM-01 19 8995667 8995667 G C MUC16 Missense_Mutation p.S13774C 0.11 probably_damaging(0.996) TCGA-XF-A9SM-01 19 9869189 9869189 C T ZNF846 Silent p.Q188Q 0.19 TCGA-XF-A9SM-01 1 109466662 109466665 TTTA - GPSM2 Frame_Shift_Del p.F547Lfs*27 0.12 TCGA-XF-A9SM-01 1 109867591 109867591 G A SORT1 Silent p.F588F 0.08 TCGA-XF-A9SM-01 1 110766506 110766506 C G KCNC4 Missense_Mutation p.I533M 0.14 tolerated(0.35) benign(0.026) TCGA-XF-A9SM-01 1 1421164 1421164 C G ATAD3B Silent p.V303V 0.15 TCGA-XF-A9SM-01 1 145498121 145498121 C G LIX1L Missense_Mutation p.Q238E 0.10 deleterious(0) benign(0.133) TCGA-XF-A9SM-01 1 153333125 153333125 G A S100A9 Silent p.E52E 0.25 TCGA-XF-A9SM-01 1 158736156 158736156 G C OR6N1 Missense_Mutation p.S106C 0.08 deleterious(0.03) benign(0.056) TCGA-XF-A9SM-01 1 179437805 179437805 G A AXDND1 Intron 0.18 TCGA-XF-A9SM-01 1 196744061 196744061 T C CFHR3 Silent p.C15C 0.10 TCGA-XF-A9SM-01 1 201184692 201184692 G A IGFN1 Silent p.V3007V 0.14 TCGA-XF-A9SM-01 1 201292251 201292251 C T PKP1 Silent p.S559S 0.10 TCGA-XF-A9SM-01 1 201334403 201334403 C G TNNT2 Silent p.L99L 0.14 TCGA-XF-A9SM-01 1 207076386 207076386 G A IL24 Silent p.Q202Q 0.11 TCGA-XF-A9SM-01 1 207495849 207495849 G A CD55 Missense_Mutation p.E75K 0.15 tolerated(1) benign(0) TCGA-XF-A9SM-01 1 237806743 237806743 C T RYR2 Silent p.A2446A 0.13 TCGA-XF-A9SM-01 1 240071668 240071668 G A CHRM3 Missense_Mutation p.R306K 0.17 tolerated(0.69) benign(0.001) TCGA-XF-A9SM-01 1 27875893 27875893 G A AHDC1 Nonsense_Mutation p.Q912* 0.16 TCGA-XF-A9SM-01 1 28907457 28907457 G C TRNAU1AP 3'Flank 0.09 TCGA-XF-A9SM-01 1 32622970 32622970 G A KPNA6 Missense_Mutation p.M85I 0.11 tolerated(0.28) benign(0.071) TCGA-XF-A9SM-01 1 32745564 32745564 C T LCK Silent p.L388L 0.13 TCGA-XF-A9SM-01 1 33149832 33149832 G A RBBP4 3'UTR 0.18 TCGA-XF-A9SM-01 1 36820993 36820993 C G STK40 Silent p.R128R 0.09 TCGA-XF-A9SM-01 1 41481862 41481862 C T SLFNL1 Missense_Mutation p.M380I 0.09 tolerated(0.28) benign(0) TCGA-XF-A9SM-01 1 44595068 44595068 C A KLF17 Missense_Mutation p.S42Y 0.17 deleterious(0.02) benign(0.126) TCGA-XF-A9SM-01 1 45241246 45241246 C G RPS8 5'UTR 0.11 TCGA-XF-A9SM-01 1 46498376 46498376 G C MAST2 Missense_Mutation p.E1175Q 0.15 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-XF-A9SM-01 1 47842521 47842521 C G CMPK1 3'UTR 0.22 TCGA-XF-A9SM-01 1 51253723 51253723 C G FAF1 Missense_Mutation p.E106Q 0.26 tolerated(0.19) probably_damaging(0.962) TCGA-XF-A9SM-01 1 84880516 84880516 C G DNASE2B Missense_Mutation p.Q351E 0.10 deleterious(0.03) benign(0.008) TCGA-XF-A9SM-01 20 21687300 21687300 C T PAX1 Missense_Mutation p.R171C 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SM-01 20 25273202 25273202 C T PYGB Silent p.F710F 0.16 TCGA-XF-A9SM-01 20 25459711 25459711 G T NINL Missense_Mutation p.H683Q 0.15 tolerated(0.28) benign(0.021) TCGA-XF-A9SM-01 20 30433048 30433048 C T FOXS1 Missense_Mutation p.D100N 0.18 tolerated(1) probably_damaging(0.997) TCGA-XF-A9SM-01 20 30737508 30737508 G C TM9SF4 Missense_Mutation p.M342I 0.16 tolerated(0.19) benign(0.425) TCGA-XF-A9SM-01 20 34025208 34025208 G A GDF5 Silent p.I167I 0.17 TCGA-XF-A9SM-01 20 3520912 3520912 G A ATRN Missense_Mutation p.E180K 0.06 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SM-01 20 44453228 44453228 G A TNNC2 Silent p.I35I 0.15 TCGA-XF-A9SM-01 20 55099861 55099861 C T FAM209A 5'UTR 0.05 TCGA-XF-A9SM-01 20 61512603 61512603 C T DIDO1 Missense_Mutation p.E1569K 0.22 probably_damaging(0.996) TCGA-XF-A9SM-01 20 62172280 62172280 G A SRMS Missense_Mutation p.A453V 0.05 tolerated(0.31) benign(0.016) TCGA-XF-A9SM-01 21 30403041 30403041 G C USP16 Missense_Mutation p.E63Q 0.06 deleterious(0.03) possibly_damaging(0.775) TCGA-XF-A9SM-01 22 29177081 29177081 A G CCDC117 Missense_Mutation p.I129V 0.11 tolerated(1) benign(0) TCGA-XF-A9SM-01 22 30387504 30387504 C G MTMR3 Nonsense_Mutation p.S102* 0.18 TCGA-XF-A9SM-01 22 35660906 35660906 C T HMGXB4 Silent p.L175L 0.11 TCGA-XF-A9SM-01 22 41553245 41553245 C T EP300 Nonsense_Mutation p.Q1112* 0.14 TCGA-XF-A9SM-01 22 43579092 43579092 C T TTLL12 Missense_Mutation p.E81K 0.12 tolerated(0.34) benign(0.018) TCGA-XF-A9SM-01 2 160205274 160205274 G A BAZ2B Silent p.L1736L 0.09 TCGA-XF-A9SM-01 2 172336557 172336557 A G DCAF17 Missense_Mutation p.I426V 0.24 tolerated(0.35) benign(0.034) TCGA-XF-A9SM-01 2 224463935 224463935 G C SCG2 Missense_Mutation p.I22M 0.14 tolerated(0.08) benign(0.219) TCGA-XF-A9SM-01 2 233710508 233710508 C G GIGYF2 Silent p.L1145L 0.10 TCGA-XF-A9SM-01 2 26152239 26152239 C A KIF3C Missense_Mutation p.R741S 0.15 benign(0.145) TCGA-XF-A9SM-01 2 26152240 26152240 C A KIF3C Missense_Mutation p.R741M 0.14 possibly_damaging(0.712) TCGA-XF-A9SM-01 2 68389445 68389445 G C PNO1 Missense_Mutation p.E164Q 0.11 tolerated(0.05) benign(0.08) TCGA-XF-A9SM-01 2 75899073 75899073 C G GCFC2 Intron 0.26 TCGA-XF-A9SM-01 2 98340718 98340718 C T ZAP70 Silent p.G73G 0.47 TCGA-XF-A9SM-01 3 113004280 113004280 C G BOC Missense_Mutation p.H1009D 0.07 tolerated_low_confidence(0.19) benign(0.066) TCGA-XF-A9SM-01 3 123014951 123014951 C G ADCY5 Missense_Mutation p.D1015H 0.32 deleterious(0.03) probably_damaging(0.985) TCGA-XF-A9SM-01 3 124646580 124646580 C T MUC13 Missense_Mutation p.D104N 0.10 tolerated(0.81) benign(0.023) TCGA-XF-A9SM-01 3 127379611 127379611 C T PODXL2 Missense_Mutation p.S247L 0.38 tolerated(0.05) benign(0.007) TCGA-XF-A9SM-01 3 142185265 142185265 C T ATR Missense_Mutation p.M2266I 0.10 deleterious(0.03) benign(0.184) TCGA-XF-A9SM-01 3 142185294 142185294 C T ATR Missense_Mutation p.E2257K 0.12 tolerated(0.46) benign(0.164) TCGA-XF-A9SM-01 3 14746102 14746102 C G C3orf20 Missense_Mutation p.F379L 0.10 tolerated(0.16) probably_damaging(0.999) TCGA-XF-A9SM-01 3 151045737 151045737 G A P2RY13 3'UTR 0.11 TCGA-XF-A9SM-01 3 167170773 167170773 C T SERPINI2 Silent p.L305L 0.14 TCGA-XF-A9SM-01 3 180322328 180322328 C T TTC14 Missense_Mutation p.L212F 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-XF-A9SM-01 3 182910873 182910873 C T MCF2L2 Missense_Mutation p.G977E 0.05 tolerated(0.53) benign(0.003) TCGA-XF-A9SM-01 3 195484071 195484071 C G MUC4 Missense_Mutation p.E5039Q 0.15 benign(0.009) TCGA-XF-A9SM-01 3 3030084 3030084 G A CNTN4 Missense_Mutation p.A472T 0.06 tolerated(0.06) possibly_damaging(0.595) TCGA-XF-A9SM-01 3 32932639 32932639 C T TRIM71 Missense_Mutation p.S648F 0.14 tolerated(0.06) benign(0.15) TCGA-XF-A9SM-01 3 37033509 37033509 G C EPM2AIP1 Missense_Mutation p.L354V 0.07 deleterious(0) benign(0.027) TCGA-XF-A9SM-01 3 432705 432705 G C CHL1 Missense_Mutation p.R885T 0.29 tolerated(1) benign(0.011) TCGA-XF-A9SM-01 3 49845268 49845268 C T UBA7 Silent p.V872V 0.19 TCGA-XF-A9SM-01 3 51667733 51667733 C T RAD54L2 Silent p.L322L 0.09 TCGA-XF-A9SM-01 3 52386706 52386706 A C DNAH1 Missense_Mutation p.S1004R 0.23 benign(0.017) TCGA-XF-A9SM-01 3 52878902 52878902 G C TMEM110 Missense_Mutation p.I161M 0.08 deleterious(0) probably_damaging(0.983) TCGA-XF-A9SM-01 3 65342558 65342558 C T MAGI1 Missense_Mutation p.R1295Q 0.12 tolerated(0.12) benign(0.275) TCGA-XF-A9SM-01 3 65422833 65422833 G A MAGI1 Nonsense_Mutation p.Q454* 0.08 TCGA-XF-A9SM-01 3 69050835 69050835 G C EOGT Silent p.L217L 0.16 TCGA-XF-A9SM-01 3 69168492 69168492 C T LMOD3 Silent p.E338E 0.10 TCGA-XF-A9SM-01 3 69168494 69168494 C T LMOD3 Missense_Mutation p.E338K 0.11 tolerated(0.2) probably_damaging(0.999) TCGA-XF-A9SM-01 4 111397613 111397613 C G ENPEP Missense_Mutation p.Q15E 0.18 deleterious_low_confidence(0.01) benign(0.005) TCGA-XF-A9SM-01 4 13601280 13601280 T C BOD1L1 Missense_Mutation p.K2415R 0.08 benign(0.03) TCGA-XF-A9SM-01 4 144359666 144359666 G A GAB1 Missense_Mutation p.D370N 0.22 tolerated(0.14) probably_damaging(0.948) TCGA-XF-A9SM-01 4 145035857 145035857 C A GYPA Nonsense_Mutation p.E141* 0.33 TCGA-XF-A9SM-01 4 148886219 148886219 G C ARHGAP10 Missense_Mutation p.V499L 0.07 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SM-01 4 151408924 151408924 G A LRBA Missense_Mutation p.R2182C 0.13 deleterious(0.02) benign(0.003) TCGA-XF-A9SM-01 4 15444375 15444375 C A C1QTNF7 Nonsense_Mutation p.Y281* 0.08 TCGA-XF-A9SM-01 4 154502710 154502710 C T KIAA0922 Missense_Mutation p.S297L 0.15 tolerated(0.08) benign(0.073) TCGA-XF-A9SM-01 4 15556692 15556692 C T CC2D2A Intron 0.31 TCGA-XF-A9SM-01 4 15627442 15627442 G A FBXL5 Missense_Mutation p.S428L 0.10 tolerated_low_confidence(0.5) benign(0) TCGA-XF-A9SM-01 4 166924645 166924645 G A TLL1 Silent p.V245V 0.09 TCGA-XF-A9SM-01 4 2910284 2910284 C T ADD1 Nonsense_Mutation p.Q551* 0.22 TCGA-XF-A9SM-01 4 38091734 38091734 C G TBC1D1 Silent p.L744L 0.16 TCGA-XF-A9SM-01 4 39109248 39109248 C G KLHL5 Missense_Mutation p.L575V 0.08 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SM-01 4 71114859 71114859 C T CSN3 Missense_Mutation p.R78C 0.21 deleterious(0.04) possibly_damaging(0.898) TCGA-XF-A9SM-01 4 71588290 71588290 C T RUFY3 5'UTR 0.24 TCGA-XF-A9SM-01 4 72994449 72994449 C T NPFFR2 Silent p.I149I 0.07 TCGA-XF-A9SM-01 5 110097168 110097168 C T SLC25A46 Missense_Mutation p.P315S 0.11 deleterious(0.04) possibly_damaging(0.873) TCGA-XF-A9SM-01 5 118500301 118500301 C G DMXL1 Missense_Mutation p.S1601C 0.14 deleterious(0) possibly_damaging(0.89) TCGA-XF-A9SM-01 5 13721340 13721340 G A DNAH5 Silent p.I4016I 0.11 TCGA-XF-A9SM-01 5 140347337 140347337 C T PCDHAC2 Missense_Mutation p.S329F 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-XF-A9SM-01 5 176696774 176696774 G C NSD1 Missense_Mutation p.K1825N 0.26 deleterious(0.04) possibly_damaging(0.57) TCGA-XF-A9SM-01 5 179268950 179268950 C G C5orf45 Missense_Mutation p.E136Q 0.07 deleterious(0.02) probably_damaging(0.933) TCGA-XF-A9SM-01 5 80554957 80554957 G C CKMT2 Missense_Mutation p.E300Q 0.16 tolerated(0.18) benign(0.006) TCGA-XF-A9SM-01 6 10398847 10398847 G C TFAP2A Missense_Mutation p.Q373E 0.09 deleterious(0) probably_damaging(0.954) TCGA-XF-A9SM-01 6 112575111 112575111 G C LAMA4 Intron 0.16 TCGA-XF-A9SM-01 6 152642879 152642879 C T SYNE1 Missense_Mutation p.D5354N 0.10 benign(0.388) TCGA-XF-A9SM-01 6 25479352 25479352 C G LRRC16A Intron 0.12 TCGA-XF-A9SM-01 6 28543158 28543158 A G SCAND3 Missense_Mutation p.F442L 0.11 tolerated_low_confidence(0.06) probably_damaging(0.931) TCGA-XF-A9SM-01 6 29455303 29455303 G T MAS1L Nonsense_Mutation p.S126* 0.13 TCGA-XF-A9SM-01 6 30882930 30882930 C G VARS2 Intron 0.08 TCGA-XF-A9SM-01 6 31555734 31555734 G C LST1 Missense_Mutation p.E42D 0.16 deleterious(0.02) probably_damaging(0.973) TCGA-XF-A9SM-01 6 32130357 32130357 C T PPT2 Silent p.F247F 0.12 TCGA-XF-A9SM-01 6 33284271 33284271 G C ZBTB22 Missense_Mutation p.D141E 0.12 deleterious(0) benign(0.389) TCGA-XF-A9SM-01 6 33690952 33690952 C T IP6K3 Missense_Mutation p.D260N 0.19 tolerated(0.08) possibly_damaging(0.737) TCGA-XF-A9SM-01 6 34498278 34498278 G C PACSIN1 Missense_Mutation p.E317D 0.13 deleterious(0.05) possibly_damaging(0.771) TCGA-XF-A9SM-01 6 34791060 34791060 G A UHRF1BP1 Missense_Mutation p.M91I 0.07 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SM-01 6 43589377 43589377 C T GTPBP2 Missense_Mutation p.E595K 0.17 tolerated(0.83) benign(0.039) TCGA-XF-A9SM-01 6 49426828 49426828 C T MUT Missense_Mutation p.E118K 0.13 deleterious_low_confidence(0.01) benign(0.253) TCGA-XF-A9SM-01 6 56485189 56485189 C A DST Intron 0.20 TCGA-XF-A9SM-01 6 6145933 6145933 C A F13A1 Silent p.L706L 0.05 TCGA-XF-A9SM-01 6 71603972 71603972 G T B3GAT2 Silent p.R199R 0.13 TCGA-XF-A9SM-01 6 87726069 87726069 C T HTR1E Silent p.I339I 0.14 TCGA-XF-A9SM-01 6 90455131 90455131 C A MDN1 Splice_Site p.X1347_splice 0.07 TCGA-XF-A9SM-01 6 94120421 94120421 C G EPHA7 Missense_Mutation p.E210D 0.09 deleterious(0.01) benign(0.237) TCGA-XF-A9SM-01 7 102036972 102036972 C G PRKRIP1 Silent p.L38L 0.26 TCGA-XF-A9SM-01 7 12728098 12728098 C G ARL4A Missense_Mutation p.F73L 0.08 tolerated(0.19) benign(0.017) TCGA-XF-A9SM-01 7 141414017 141414017 G A WEE2 Silent p.L117L 0.19 TCGA-XF-A9SM-01 7 150696314 150696314 C T NOS3 Silent p.Y331Y 0.27 TCGA-XF-A9SM-01 7 150772567 150772567 G A SLC4A2 Silent p.V1091V 0.17 TCGA-XF-A9SM-01 7 18066917 18066917 C T PRPS1L1 Silent p.K163K 0.25 TCGA-XF-A9SM-01 7 33014923 33014923 C G FKBP9 Missense_Mutation p.S166C 0.11 deleterious(0.01) probably_damaging(0.918) TCGA-XF-A9SM-01 7 43917824 43917824 G C URGCP Nonsense_Mutation p.S413* 0.05 TCGA-XF-A9SM-01 7 57187801 57187801 C T ZNF479 Missense_Mutation p.E441K 0.14 deleterious(0.04) benign(0.028) TCGA-XF-A9SM-01 7 6731177 6731177 C G ZNF12 Missense_Mutation p.E466Q 0.07 deleterious(0.04) probably_damaging(0.938) TCGA-XF-A9SM-01 7 92164070 92164070 C T RBM48 Missense_Mutation p.S268L 0.17 tolerated(0.13) probably_damaging(0.931) TCGA-XF-A9SM-01 8 103291080 103291080 C A UBR5 Missense_Mutation p.V2088F 0.05 tolerated(0.69) benign(0.021) TCGA-XF-A9SM-01 8 105436506 105436506 C T DPYS Missense_Mutation p.D402N 0.15 deleterious(0) probably_damaging(0.968) TCGA-XF-A9SM-01 8 117869588 117869588 C G RAD21 Silent p.L202L 0.27 TCGA-XF-A9SM-01 8 125601898 125601898 C A MTSS1 Missense_Mutation p.K116N 0.09 deleterious(0) probably_damaging(0.926) TCGA-XF-A9SM-01 8 125601934 125601934 C G MTSS1 Silent p.L104L 0.09 TCGA-XF-A9SM-01 8 130859062 130859062 A G FAM49B Missense_Mutation p.L300P 0.12 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SM-01 8 133048645 133048645 C G OC90 Intron 0.14 TCGA-XF-A9SM-01 8 37734845 37734845 G A RAB11FIP1 Missense_Mutation p.S199L 0.09 tolerated(0.07) possibly_damaging(0.857) TCGA-XF-A9SM-01 8 41790682 41790682 G C KAT6A Missense_Mutation p.Q1686E 0.24 unknown(0) TCGA-XF-A9SM-01 8 41906066 41906066 G C KAT6A Missense_Mutation p.H144D 0.12 probably_damaging(0.914) TCGA-XF-A9SM-01 8 67372540 67372540 T C ADHFE1 Intron 0.13 TCGA-XF-A9SM-01 8 89339462 89339462 G A MMP16 5'UTR 0.20 TCGA-XF-A9SM-01 8 95508104 95508104 C T KIAA1429 Missense_Mutation p.D1467N 0.16 deleterious(0) probably_damaging(0.983) TCGA-XF-A9SM-01 9 107599778 107599778 C G ABCA1 Silent p.L375L 0.19 TCGA-XF-A9SM-01 9 115060143 115060143 C T PTBP3 Missense_Mutation p.M38I 0.21 tolerated(0.08) benign(0.192) TCGA-XF-A9SM-01 9 131599078 131599078 C T CCBL1 Intron 0.24 TCGA-XF-A9SM-01 9 136213528 136213528 C G MED22 5'UTR 0.58 TCGA-XF-A9SM-01 9 19078198 19078198 G C HAUS6 Missense_Mutation p.F389L 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SM-01 9 19078279 19078279 G C HAUS6 Silent p.L362L 0.07 TCGA-XF-A9SM-01 9 21166192 21166192 G A IFNA21 Silent p.I140I 0.26 TCGA-XF-A9SM-01 9 21334931 21334931 G A KLHL9 5'UTR 0.33 TCGA-XF-A9SM-01 9 39085918 39085918 C T CNTNAP3 Intron 0.22 TCGA-XF-A9SM-01 9 95280061 95280061 C G ECM2 Missense_Mutation p.R130T 0.30 tolerated(0.07) benign(0.065) TCGA-XF-A9SM-01 9 99285702 99285702 C T CDC14B Missense_Mutation p.M362I 0.05 deleterious(0.03) benign(0.089) TCGA-XF-A9SM-01 9 99795261 99795261 G A CTSV Silent p.I325I 0.25 TCGA-XF-A9SM-01 X 118676491 118676491 C T CXorf56 Missense_Mutation p.E164K 0.40 deleterious(0.02) benign(0.086) TCGA-XF-A9SM-01 X 134185862 134185862 C T FAM127B Missense_Mutation p.D93N 0.36 tolerated(0.47) benign(0.057) TCGA-XF-A9SM-01 X 142718749 142718749 G C SLITRK4 Missense_Mutation p.S59C 0.20 tolerated(0.14) probably_damaging(0.99) TCGA-XF-A9SM-01 X 1460645 1460645 G C IL3RA 5'UTR 0.13 TCGA-XF-A9SM-01 X 154157347 154157347 G C F8 Missense_Mutation p.S1573C 0.37 tolerated(0.1) possibly_damaging(0.838) TCGA-XF-A9SP-01 10 105777993 105777993 G T SLK Nonsense_Mutation p.E985* 0.19 TCGA-XF-A9SP-01 10 1229217 1229217 C T ADARB2 Silent p.Q712Q 0.28 TCGA-XF-A9SP-01 10 126518032 126518032 C T FAM175B Nonsense_Mutation p.Q217* 0.11 TCGA-XF-A9SP-01 10 21804607 21804607 C G SKIDA1 Missense_Mutation p.K715N 0.05 tolerated(0.09) unknown(0) TCGA-XF-A9SP-01 10 22208774 22208774 C A DNAJC1 Nonsense_Mutation p.E208* 0.06 TCGA-XF-A9SP-01 10 22830862 22830862 C T PIP4K2A Missense_Mutation p.E303K 0.56 tolerated(0.36) benign(0.127) TCGA-XF-A9SP-01 10 27687759 27687759 C T PTCHD3 Missense_Mutation p.D590N 0.37 tolerated(0.16) benign(0.091) TCGA-XF-A9SP-01 10 27687761 27687761 C T PTCHD3 Missense_Mutation p.R589K 0.38 tolerated(0.2) benign(0.076) TCGA-XF-A9SP-01 10 27687896 27687896 C G PTCHD3 Missense_Mutation p.R544T 0.49 deleterious(0.01) probably_damaging(0.991) TCGA-XF-A9SP-01 10 43287141 43287141 C G BMS1 Missense_Mutation p.L235V 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9SP-01 10 55582378 55582378 G A PCDH15 Missense_Mutation p.S1705L 0.33 tolerated_low_confidence(0.13) benign(0.002) TCGA-XF-A9SP-01 10 61834311 61834311 C T ANK3 Missense_Mutation p.E2110K 0.12 probably_damaging(0.956) TCGA-XF-A9SP-01 10 61834323 61834323 C T ANK3 Missense_Mutation p.D2106N 0.11 probably_damaging(0.977) TCGA-XF-A9SP-01 10 62631940 62631940 C T RHOBTB1 Intron 0.11 TCGA-XF-A9SP-01 10 75104990 75104990 C T TTC18 Missense_Mutation p.E148K 0.12 deleterious(0.02) benign(0.005) TCGA-XF-A9SP-01 10 75214202 75214202 T A PPP3CB Missense_Mutation p.E385V 0.23 deleterious(0) possibly_damaging(0.663) TCGA-XF-A9SP-01 10 75457466 75457466 C T AGAP5 Silent p.E16E 0.12 TCGA-XF-A9SP-01 10 98802774 98802774 C A SLIT1 Missense_Mutation p.G683V 0.21 deleterious(0) probably_damaging(0.981) TCGA-XF-A9SP-01 11 108381641 108381641 C G EXPH5 Missense_Mutation p.E1531D 0.14 tolerated(0.75) benign(0.003) TCGA-XF-A9SP-01 11 117969812 117969812 C T TMPRSS4 Silent p.L52L 0.27 TCGA-XF-A9SP-01 11 122945490 122945490 C G CLMP Silent p.L247L 0.23 TCGA-XF-A9SP-01 11 124489851 124489851 G C PANX3 3'UTR 0.09 TCGA-XF-A9SP-01 11 126120475 126120475 G A FAM118B Missense_Mutation p.M138I 0.07 tolerated(1) benign(0.004) TCGA-XF-A9SP-01 11 1267770 1267770 C T MUC5B Silent p.T3220T 0.04 TCGA-XF-A9SP-01 11 128781577 128781577 G A KCNJ5 Missense_Mutation p.V137M 0.05 tolerated(0.15) probably_damaging(0.981) TCGA-XF-A9SP-01 11 1311560 1311560 G A TOLLIP Missense_Mutation p.T88M 0.19 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 11 46403917 46403917 G C MDK Missense_Mutation p.K50N 0.31 deleterious(0.03) possibly_damaging(0.903) TCGA-XF-A9SP-01 11 4825760 4825760 C T OR52R1 5'Flank 0.18 TCGA-XF-A9SP-01 11 55594970 55594970 C G OR5L2 Missense_Mutation p.I92M 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SP-01 11 55926955 55926955 A G OR8K5 Missense_Mutation p.L280S 0.13 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-XF-A9SP-01 11 59210659 59210659 C T OR5A1 Silent p.A6A 0.06 TCGA-XF-A9SP-01 11 6047990 6047990 C G OR56A1 Missense_Mutation p.Q315H 0.12 tolerated(0.22) benign(0) TCGA-XF-A9SP-01 11 61113951 61113951 C T DAK Silent p.A568A 0.04 TCGA-XF-A9SP-01 11 61547373 61547373 C T MYRF Silent p.I769I 0.41 TCGA-XF-A9SP-01 11 63487959 63487959 G A RTN3 Missense_Mutation p.R662K 0.25 tolerated(0.15) benign(0.025) TCGA-XF-A9SP-01 11 64064472 64064472 C T KCNK4 Silent p.I104I 0.21 TCGA-XF-A9SP-01 11 65034096 65034096 G A POLA2 Missense_Mutation p.M41I 0.13 tolerated(0.48) benign(0.006) TCGA-XF-A9SP-01 11 65268616 65268617 - T MALAT1 RNA 0.23 TCGA-XF-A9SP-01 11 65307976 65307976 C T LTBP3 Silent p.G1029G 0.19 TCGA-XF-A9SP-01 11 67925492 67925492 G C SUV420H1 Missense_Mutation p.S774C 0.25 deleterious(0) possibly_damaging(0.841) TCGA-XF-A9SP-01 11 67926158 67926158 G C SUV420H1 Missense_Mutation p.S552C 0.14 deleterious(0.01) benign(0.019) TCGA-XF-A9SP-01 11 7982292 7982292 G A NLRP10 Silent p.L289L 0.12 TCGA-XF-A9SP-01 11 88780504 88780504 C G GRM5 Silent p.L179L 0.26 TCGA-XF-A9SP-01 12 102558247 102558247 C T PARPBP Missense_Mutation p.S176L 0.16 deleterious(0) possibly_damaging(0.814) TCGA-XF-A9SP-01 12 102558258 102558258 C T PARPBP Silent p.L180L 0.17 TCGA-XF-A9SP-01 12 111772435 111772435 G C CUX2 Missense_Mutation p.E1039D 0.31 deleterious(0.05) benign(0.199) TCGA-XF-A9SP-01 12 113405839 113405839 G T OAS3 Missense_Mutation p.Q988H 0.10 deleterious(0.04) probably_damaging(0.984) TCGA-XF-A9SP-01 12 113730780 113730780 G A TPCN1 Missense_Mutation p.E791K 0.16 tolerated(0.09) probably_damaging(0.934) TCGA-XF-A9SP-01 12 113730863 113730863 G C TPCN1 Missense_Mutation p.Q818H 0.33 tolerated(0.05) benign(0.019) TCGA-XF-A9SP-01 12 120995453 120995453 G A RNF10 Nonsense_Mutation p.W312* 0.27 TCGA-XF-A9SP-01 12 124403220 124403220 C T DNAH10 Intron 0.33 TCGA-XF-A9SP-01 12 14927678 14927678 G C H2AFJ Missense_Mutation p.E92Q 0.16 deleterious_low_confidence(0.02) benign(0.247) TCGA-XF-A9SP-01 12 48367985 48367985 C T COL2A1 Missense_Mutation p.E1402K 0.24 unknown(0) TCGA-XF-A9SP-01 12 53241885 53241885 C T KRT78 Silent p.Q135Q 0.11 TCGA-XF-A9SP-01 12 53647946 53647946 G A MFSD5 Missense_Mutation p.E550K 0.22 tolerated(0.43) benign(0.03) TCGA-XF-A9SP-01 12 54969789 54969789 C T PDE1B Silent p.F427F 0.23 TCGA-XF-A9SP-01 12 54970359 54970359 C T PDE1B Nonsense_Mutation p.Q461* 0.12 TCGA-XF-A9SP-01 12 55714585 55714585 G C OR6C1 Missense_Mutation p.E68Q 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9SP-01 12 56091767 56091767 G T ITGA7 Missense_Mutation p.F416L 0.11 deleterious(0.03) benign(0.044) TCGA-XF-A9SP-01 12 56092248 56092248 G C ITGA7 Missense_Mutation p.L375V 0.25 tolerated(0.67) benign(0.06) TCGA-XF-A9SP-01 12 56231058 56231058 G A MMP19 Missense_Mutation p.S430L 0.28 deleterious(0) probably_damaging(0.973) TCGA-XF-A9SP-01 12 56296112 56296112 G C WIBG Missense_Mutation p.F53L 0.18 tolerated(0.07) benign(0.119) TCGA-XF-A9SP-01 12 57927773 57927773 G A DCTN2 Missense_Mutation p.S216F 0.18 tolerated(0.43) benign(0.076) TCGA-XF-A9SP-01 12 64536328 64536328 G C SRGAP1 Missense_Mutation p.R1045T 0.15 deleterious_low_confidence(0) benign(0.013) TCGA-XF-A9SP-01 12 64588323 64588323 G C C12orf66 Missense_Mutation p.L213V 0.19 deleterious(0) probably_damaging(0.982) TCGA-XF-A9SP-01 12 7527290 7527290 G A CD163L1 Missense_Mutation p.H1053Y 0.22 tolerated(0.28) benign(0.068) TCGA-XF-A9SP-01 13 108882430 108882430 G C ABHD13 Missense_Mutation p.K288N 0.19 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SP-01 13 111367942 111367942 G A ING1 Missense_Mutation p.R51Q 0.11 tolerated_low_confidence(0.13) benign(0.001) TCGA-XF-A9SP-01 13 23914933 23914933 G C SACS Missense_Mutation p.P1028A 0.14 benign(0) TCGA-XF-A9SP-01 13 25744249 25744249 C T AMER2 Silent p.K503K 0.20 TCGA-XF-A9SP-01 13 28124599 28124599 A T LNX2 Nonsense_Mutation p.L603* 0.26 TCGA-XF-A9SP-01 13 33096337 33096337 C T N4BP2L2 Missense_Mutation p.M56I 0.09 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SP-01 13 33315263 33315263 G C PDS5B Missense_Mutation p.V818L 0.11 tolerated(0.74) benign(0.174) TCGA-XF-A9SP-01 13 80911692 80911692 C T SPRY2 Missense_Mutation p.R50Q 0.22 deleterious(0.01) possibly_damaging(0.559) TCGA-XF-A9SP-01 13 97639260 97639260 C T OXGR1 Missense_Mutation p.V252I 0.32 tolerated(0.32) benign(0.016) TCGA-XF-A9SP-01 14 100996425 100996425 C G WDR25 3'UTR 0.29 TCGA-XF-A9SP-01 14 102816325 102816325 C T CINP Missense_Mutation p.E138K 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SP-01 14 103412824 103412824 G A CDC42BPB Silent p.I1243I 0.13 TCGA-XF-A9SP-01 14 103412917 103412917 G C CDC42BPB Silent p.L1212L 0.18 TCGA-XF-A9SP-01 14 105061493 105061493 G A TMEM179 Silent p.G177G 0.53 TCGA-XF-A9SP-01 14 24648050 24648050 C G REC8 Silent p.L376L 0.28 TCGA-XF-A9SP-01 14 25100311 25100311 A T GZMB Missense_Mutation p.V237E 0.20 deleterious(0) benign(0.119) TCGA-XF-A9SP-01 14 35786505 35786505 G C PSMA6 Missense_Mutation p.R245T 0.15 deleterious(0.02) benign(0.05) TCGA-XF-A9SP-01 14 50769707 50769707 C A L2HGDH Nonsense_Mutation p.G57* 0.29 TCGA-XF-A9SP-01 14 51446213 51446213 A G TRIM9 Silent p.N654N 0.15 TCGA-XF-A9SP-01 14 60574649 60574649 C G PCNXL4 Intron 0.21 TCGA-XF-A9SP-01 14 64877852 64877852 G T MTHFD1 Silent p.L57L 0.15 TCGA-XF-A9SP-01 14 75142466 75142466 G C AREL1 Missense_Mutation p.S339C 0.28 deleterious_low_confidence(0.04) benign(0.172) TCGA-XF-A9SP-01 14 77810143 77810143 C T TMED8 Silent p.Q117Q 0.24 TCGA-XF-A9SP-01 14 93412805 93412805 T G ITPK1 Missense_Mutation p.S258R 0.11 tolerated(0.1) possibly_damaging(0.758) TCGA-XF-A9SP-01 14 93412806 93412806 C A ITPK1 Silent p.P257P 0.11 TCGA-XF-A9SP-01 14 95688112 95688112 C A CLMN Splice_Site p.X81_splice 0.09 TCGA-XF-A9SP-01 15 100211576 100211576 G A MEF2A Intron 0.20 TCGA-XF-A9SP-01 15 34634284 34634284 G C NOP10 Missense_Mutation p.T27S 0.13 tolerated(0.08) benign(0.303) TCGA-XF-A9SP-01 15 34642915 34642915 C T NUTM1 Missense_Mutation p.R246C 0.25 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 15 41794614 41794614 C A ITPKA Silent p.S341S 0.27 TCGA-XF-A9SP-01 15 43621006 43621006 G A LCMT2 Missense_Mutation p.S561F 0.28 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SP-01 15 49284421 49284421 G C SECISBP2L 3'UTR 0.13 TCGA-XF-A9SP-01 15 50212446 50212446 C G ATP8B4 Missense_Mutation p.L640F 0.13 deleterious(0.03) possibly_damaging(0.745) TCGA-XF-A9SP-01 15 57976806 57976806 G A GCOM1 Intron 0.25 TCGA-XF-A9SP-01 15 65226398 65226398 C T ANKDD1A Silent p.L277L 0.15 TCGA-XF-A9SP-01 15 66416234 66416234 C G MEGF11 Intron 0.14 TCGA-XF-A9SP-01 15 75641616 75641616 G A NEIL1 Missense_Mutation p.D124N 0.17 tolerated(0.12) benign(0.106) TCGA-XF-A9SP-01 15 77756718 77756718 C G HMG20A Missense_Mutation p.H76D 0.16 tolerated(0.64) benign(0.004) TCGA-XF-A9SP-01 15 86201800 86201800 G A AKAP13 Intron 0.15 TCGA-XF-A9SP-01 15 89402203 89402203 G C ACAN Silent p.L2129L 0.17 TCGA-XF-A9SP-01 15 89844663 89844663 C T FANCI Missense_Mutation p.S999F 0.21 deleterious(0.01) possibly_damaging(0.48) TCGA-XF-A9SP-01 16 20808288 20808288 A T ACSM3 Silent p.T585T 0.28 TCGA-XF-A9SP-01 16 21968618 21968618 G A UQCRC2 Silent p.P32P 0.17 TCGA-XF-A9SP-01 16 23641335 23641335 C T PALB2 Missense_Mutation p.D714N 0.17 tolerated(0.47) benign(0.027) TCGA-XF-A9SP-01 16 28604836 28604836 G A SULT1A2 Silent p.F142F 0.40 TCGA-XF-A9SP-01 16 30531205 30531205 G A ITGAL Missense_Mutation p.E1086K 0.39 tolerated(0.07) possibly_damaging(0.792) TCGA-XF-A9SP-01 16 4790537 4790537 C T C16orf71 Silent p.C220C 0.26 TCGA-XF-A9SP-01 16 65026896 65026896 G A CDH11 Missense_Mutation p.P189S 0.32 deleterious(0.04) possibly_damaging(0.858) TCGA-XF-A9SP-01 16 66977802 66977802 G A CES2 Silent p.L582L 0.50 TCGA-XF-A9SP-01 16 77859162 77859162 C T VAT1L Missense_Mutation p.A128V 0.40 tolerated(0.59) possibly_damaging(0.615) TCGA-XF-A9SP-01 16 89350676 89350676 C T ANKRD11 Silent p.L758L 0.31 TCGA-XF-A9SP-01 17 17766066 17766066 G C TOM1L2 Missense_Mutation p.S394C 0.15 deleterious(0) possibly_damaging(0.572) TCGA-XF-A9SP-01 17 27044000 27044000 C A RAB34 Nonsense_Mutation p.E80* 0.27 TCGA-XF-A9SP-01 17 27861292 27861292 C T TAOK1 Missense_Mutation p.L840F 0.14 tolerated(0.05) benign(0.008) TCGA-XF-A9SP-01 17 29684078 29684078 G A NF1 Silent p.P2613P 0.25 TCGA-XF-A9SP-01 17 30322735 30322735 G T SUZ12 Missense_Mutation p.S583I 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SP-01 17 32964376 32964376 C T TMEM132E Missense_Mutation p.R694C 0.34 deleterious(0) possibly_damaging(0.899) TCGA-XF-A9SP-01 17 33951560 33951560 G C AP2B1 Missense_Mutation p.D224H 0.38 deleterious(0.01) benign(0.313) TCGA-XF-A9SP-01 17 34072289 34072289 G A GAS2L2 Missense_Mutation p.P743S 0.05 tolerated(0.28) benign(0.007) TCGA-XF-A9SP-01 17 40453382 40453393 TGAACGTGCACA - STAT5A In_Frame_Del p.V362_N365del 0.12 TCGA-XF-A9SP-01 17 40947005 40947005 C T WNK4 Missense_Mutation p.P856S 0.29 tolerated(0.18) unknown(0) TCGA-XF-A9SP-01 17 40985622 40985622 G C PSME3 5'UTR 0.32 TCGA-XF-A9SP-01 17 41958910 41958910 G A MPP2 Silent p.L243L 0.19 TCGA-XF-A9SP-01 17 43309808 43309808 C T FMNL1 Silent p.V96V 0.27 TCGA-XF-A9SP-01 17 48434547 48434547 G A XYLT2 Silent p.L625L 0.43 TCGA-XF-A9SP-01 17 48626711 48626711 G A SPATA20 Missense_Mutation p.R242Q 0.16 tolerated(0.67) benign(0.366) TCGA-XF-A9SP-01 17 65156379 65156379 G C HELZ Silent p.L725L 0.22 TCGA-XF-A9SP-01 17 6665505 6665505 C G XAF1 Missense_Mutation p.I151M 0.12 deleterious(0) possibly_damaging(0.867) TCGA-XF-A9SP-01 17 73492500 73492500 C T KIAA0195 Missense_Mutation p.S1064F 0.29 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SP-01 17 74004010 74004010 G C EVPL Missense_Mutation p.S1759C 0.10 deleterious(0) possibly_damaging(0.885) TCGA-XF-A9SP-01 17 74004162 74004162 G A EVPL Silent p.I1708I 0.08 TCGA-XF-A9SP-01 17 74004348 74004348 G A EVPL Silent p.L1646L 0.13 TCGA-XF-A9SP-01 17 74004948 74004948 G C EVPL Missense_Mutation p.I1446M 0.07 deleterious(0) possibly_damaging(0.494) TCGA-XF-A9SP-01 17 78175633 78175633 G A CARD14 Missense_Mutation p.G648S 0.37 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 18 13087568 13087568 C A CEP192 Silent p.I1972I 0.25 TCGA-XF-A9SP-01 18 24436386 24436386 G A AQP4 Missense_Mutation p.P254L 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-XF-A9SP-01 18 28719811 28719811 A C DSC1 Missense_Mutation p.N521K 0.07 deleterious(0) possibly_damaging(0.661) TCGA-XF-A9SP-01 18 28737471 28737471 G A DSC1 Silent p.L72L 0.07 TCGA-XF-A9SP-01 18 43249312 43249312 G A SLC14A2 Nonsense_Mutation p.W693* 0.11 TCGA-XF-A9SP-01 18 5891629 5891629 G T TMEM200C Missense_Mutation p.S145Y 0.12 deleterious(0) probably_damaging(0.99) TCGA-XF-A9SP-01 18 70416325 70416325 T A NETO1 Splice_Site p.X514_splice 0.11 TCGA-XF-A9SP-01 18 77171360 77171360 C T NFATC1 Missense_Mutation p.P349L 0.26 deleterious(0.02) probably_damaging(0.938) TCGA-XF-A9SP-01 18 9887762 9887762 C G TXNDC2 Missense_Mutation p.S429C 0.33 deleterious(0.02) possibly_damaging(0.76) TCGA-XF-A9SP-01 19 10100025 10100025 C T COL5A3 Silent p.E688E 0.20 TCGA-XF-A9SP-01 19 10401846 10401846 C T ICAM5 Missense_Mutation p.R61W 0.18 deleterious(0) probably_damaging(0.955) TCGA-XF-A9SP-01 19 11545692 11545692 G A CCDC151 Missense_Mutation p.T49I 0.08 tolerated_low_confidence(0.22) benign(0.047) TCGA-XF-A9SP-01 19 12740056 12740056 G C ZNF791 Missense_Mutation p.M571I 0.13 deleterious(0.05) benign(0.003) TCGA-XF-A9SP-01 19 12740070 12740070 G A ZNF791 Missense_Mutation p.R576Q 0.10 deleterious(0.01) benign(0.153) TCGA-XF-A9SP-01 19 12792434 12792434 G A DHPS Silent p.F49F 0.25 TCGA-XF-A9SP-01 19 13080799 13080799 G A DAND5 Splice_Site p.X108_splice 0.18 TCGA-XF-A9SP-01 19 14040913 14040913 G A CC2D1A Silent p.R911R 0.21 TCGA-XF-A9SP-01 19 15659956 15659956 C G CYP4F22 Missense_Mutation p.I426M 0.46 tolerated(0.05) probably_damaging(0.915) TCGA-XF-A9SP-01 19 17379628 17379628 G C BABAM1 Missense_Mutation p.E5Q 0.40 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9SP-01 19 20026126 20026126 C G ZNF93 Missense_Mutation p.S14C 0.26 deleterious(0.04) possibly_damaging(0.766) TCGA-XF-A9SP-01 19 22157300 22157300 A G ZNF208 Missense_Mutation p.V179A 0.10 tolerated(0.33) benign(0.028) TCGA-XF-A9SP-01 19 2408402 2408402 C T TMPRSS9 Silent p.L263L 0.27 TCGA-XF-A9SP-01 19 35250212 35250212 C G ZNF599 Missense_Mutation p.M498I 0.22 tolerated(0.18) benign(0.349) TCGA-XF-A9SP-01 19 37879587 37879587 C G ZNF527 Silent p.L212L 0.05 TCGA-XF-A9SP-01 19 41086747 41086747 G A SHKBP1 Missense_Mutation p.G250E 0.09 deleterious(0.01) possibly_damaging(0.54) TCGA-XF-A9SP-01 19 41097017 41097017 C T SHKBP1 Silent p.D676D 0.41 TCGA-XF-A9SP-01 19 41600901 41600901 G C CYP2A13 Missense_Mutation p.R400T 0.06 tolerated(0.15) benign(0.039) TCGA-XF-A9SP-01 19 42582868 42582868 C A ZNF574 Missense_Mutation p.S37Y 0.24 deleterious(0) probably_damaging(0.951) TCGA-XF-A9SP-01 19 42583410 42583410 G A ZNF574 Missense_Mutation p.E218K 0.05 deleterious(0.01) benign(0.018) TCGA-XF-A9SP-01 19 42839192 42839192 G A MEGF8 Silent p.L188L 0.17 TCGA-XF-A9SP-01 19 4298317 4298317 G C TMIGD2 Missense_Mutation p.S24R 0.24 tolerated(0.16) possibly_damaging(0.59) TCGA-XF-A9SP-01 19 44056957 44056957 C T XRCC1 Missense_Mutation p.R272K 0.29 tolerated(0.66) benign(0.014) TCGA-XF-A9SP-01 19 44057027 44057027 C G XRCC1 Missense_Mutation p.D249H 0.26 deleterious(0) probably_damaging(0.937) TCGA-XF-A9SP-01 19 46283704 46283704 C G DMPK 5'UTR 0.19 TCGA-XF-A9SP-01 19 46522611 46522611 C T PGLYRP1 Missense_Mutation p.G159E 0.13 deleterious(0.01) possibly_damaging(0.833) TCGA-XF-A9SP-01 19 46807222 46807222 G A HIF3A Missense_Mutation p.E32K 0.24 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SP-01 19 4891334 4891334 C G ARRDC5 Silent p.L251L 0.20 TCGA-XF-A9SP-01 19 49206737 49206737 G A FUT2 Missense_Mutation p.R175Q 0.16 tolerated(0.12) possibly_damaging(0.757) TCGA-XF-A9SP-01 19 49244278 49244278 G A IZUMO1 Missense_Mutation p.R314C 0.24 tolerated(0.24) benign(0) TCGA-XF-A9SP-01 19 54074950 54074950 G A ZNF331 Silent p.V34V 0.06 TCGA-XF-A9SP-01 19 54942066 54942066 C T TTYH1 Nonsense_Mutation p.Q339* 0.14 TCGA-XF-A9SP-01 19 56320531 56320531 C A NLRP11 Missense_Mutation p.R482I 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-XF-A9SP-01 19 56490800 56490800 A G NLRP8 Missense_Mutation p.M973V 0.09 deleterious(0.01) benign(0.008) TCGA-XF-A9SP-01 19 57088911 57088911 G C ZNF470 Missense_Mutation p.D372H 0.44 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SP-01 19 6182786 6182786 G A ACSBG2 Missense_Mutation p.E311K 0.17 deleterious(0.02) benign(0.04) TCGA-XF-A9SP-01 19 7809003 7809003 G A CD209 Silent p.L335L 0.08 TCGA-XF-A9SP-01 19 9057061 9057061 C G MUC16 Missense_Mutation p.A10129P 0.11 benign(0.145) TCGA-XF-A9SP-01 19 9452845 9452845 T G ZNF559 Missense_Mutation p.F240V 0.08 tolerated(0.06) benign(0.001) TCGA-XF-A9SP-01 19 9639899 9639899 G A ZNF426 Silent p.L274L 0.10 TCGA-XF-A9SP-01 1 117634536 117634536 C G TTF2 Silent p.L923L 0.22 TCGA-XF-A9SP-01 1 118574410 118574410 C G SPAG17 Missense_Mutation p.V1172L 0.09 tolerated(0.23) benign(0.317) TCGA-XF-A9SP-01 1 145457096 145457096 C T POLR3GL Silent p.E155E 0.43 TCGA-XF-A9SP-01 1 149783657 149783657 G A HIST2H2BF Silent p.I74I 0.30 TCGA-XF-A9SP-01 1 154407569 154407569 C G IL6R Missense_Mutation p.F248L 0.13 deleterious(0) benign(0.38) TCGA-XF-A9SP-01 1 158152691 158152691 C T CD1D Missense_Mutation p.R211C 0.22 deleterious(0.03) benign(0.004) TCGA-XF-A9SP-01 1 158299224 158299224 C T CD1B Silent p.A274A 0.14 TCGA-XF-A9SP-01 1 158687705 158687705 G T OR6K3 Silent p.S67S 0.07 TCGA-XF-A9SP-01 1 159019260 159019260 G T IFI16 Intron 0.18 TCGA-XF-A9SP-01 1 159019275 159019275 G A IFI16 Intron 0.19 TCGA-XF-A9SP-01 1 159684342 159684342 G A CRP 5'UTR 0.14 TCGA-XF-A9SP-01 1 159784075 159784075 G A FCRL6 Silent p.R380R 0.29 TCGA-XF-A9SP-01 1 159900507 159900507 G A IGSF9 Silent p.S596S 0.20 TCGA-XF-A9SP-01 1 16259024 16259024 G C SPEN Missense_Mutation p.D2097H 0.20 benign(0.352) TCGA-XF-A9SP-01 1 16578101 16578101 G A FBXO42 Silent p.G406G 0.09 TCGA-XF-A9SP-01 1 166961925 166961925 C G MAEL Missense_Mutation p.L110V 0.24 tolerated(1) benign(0.001) TCGA-XF-A9SP-01 1 1847136 1847136 C T CALML6 Missense_Mutation p.H14Y 0.19 tolerated_low_confidence(0.9) benign(0.006) TCGA-XF-A9SP-01 1 186017916 186017916 T A HMCN1 Nonsense_Mutation p.C2174* 0.17 TCGA-XF-A9SP-01 1 19513964 19513964 G C UBR4 Missense_Mutation p.Q489E 0.31 benign(0.028) TCGA-XF-A9SP-01 1 196964925 196964925 A G CFHR5 Missense_Mutation p.H229R 0.20 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SP-01 1 197073129 197073129 T C ASPM Missense_Mutation p.Q1751R 0.28 tolerated(0.86) benign(0.053) TCGA-XF-A9SP-01 1 197390557 197390557 G C CRB1 Silent p.V533V 0.21 TCGA-XF-A9SP-01 1 202287145 202287145 G A LGR6 Missense_Mutation p.V572M 0.29 deleterious(0.03) benign(0.433) TCGA-XF-A9SP-01 1 203036873 203036873 G A PPFIA4 Missense_Mutation p.R528Q 0.08 deleterious(0.01) possibly_damaging(0.584) TCGA-XF-A9SP-01 1 226334447 226334447 C T ACBD3 Missense_Mutation p.R484Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SP-01 1 226549209 226549209 C T PARP1 Silent p.L999L 0.40 TCGA-XF-A9SP-01 1 228289066 228289066 G A C1orf35 Silent p.A214A 0.24 TCGA-XF-A9SP-01 1 229478092 229478092 C G CCSAP Missense_Mutation p.E41Q 0.30 deleterious(0) unknown(0) TCGA-XF-A9SP-01 1 24397660 24397660 G C MYOM3 Missense_Mutation p.P1033A 0.23 deleterious(0.04) benign(0.168) TCGA-XF-A9SP-01 1 27106804 27106804 C - ARID1A Frame_Shift_Del p.F2141Sfs*59 0.15 TCGA-XF-A9SP-01 1 27734817 27734817 C A WASF2 Nonsense_Mutation p.E455* 0.15 TCGA-XF-A9SP-01 1 32653624 32653624 G A TXLNA Missense_Mutation p.E223K 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SP-01 1 45244374 45244374 C T RPS8 3'UTR 0.40 TCGA-XF-A9SP-01 1 48688454 48688454 G A SLC5A9 Missense_Mutation p.G16R 0.19 tolerated_low_confidence(0.22) benign(0.003) TCGA-XF-A9SP-01 1 55066961 55066961 G A ACOT11 Missense_Mutation p.V302M 0.12 deleterious(0.02) possibly_damaging(0.875) TCGA-XF-A9SP-01 1 75009625 75009625 C G TNNI3K Missense_Mutation p.H924D 0.28 deleterious_low_confidence(0.03) benign(0.04) TCGA-XF-A9SP-01 1 76211508 76211508 G A ACADM Missense_Mutation p.R210H 0.13 deleterious(0.04) benign(0.098) TCGA-XF-A9SP-01 1 9018968 9018968 G A CA6 Splice_Site p.X137_splice 0.13 TCGA-XF-A9SP-01 1 97915757 97915757 G A DPYD Missense_Mutation p.P588L 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 1 98039502 98039502 A T DPYD Missense_Mutation p.C385S 0.06 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SP-01 20 10582462 10582462 G C SLX4IP Missense_Mutation p.D134H 0.11 tolerated(0.12) benign(0.325) TCGA-XF-A9SP-01 20 23066062 23066062 G T CD93 Silent p.L256L 0.13 TCGA-XF-A9SP-01 20 23066400 23066400 G A CD93 Silent p.L144L 0.09 TCGA-XF-A9SP-01 20 32332958 32332958 G T ZNF341 Silent p.S64S 0.19 TCGA-XF-A9SP-01 20 35802469 35802469 G A MROH8 Missense_Mutation p.S130L 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-XF-A9SP-01 20 44845599 44845599 C T CDH22 Missense_Mutation p.R235H 0.06 deleterious(0) probably_damaging(0.983) TCGA-XF-A9SP-01 20 47632823 47632823 G A ARFGEF2 Missense_Mutation p.E1396K 0.35 deleterious(0.01) possibly_damaging(0.695) TCGA-XF-A9SP-01 20 50133356 50133356 G A NFATC2 Silent p.V433V 0.26 TCGA-XF-A9SP-01 20 57876610 57876610 G A EDN3 Silent p.V66V 0.33 TCGA-XF-A9SP-01 20 60509192 60509192 G A CDH4 Missense_Mutation p.D820N 0.10 deleterious(0) probably_damaging(0.973) TCGA-XF-A9SP-01 20 62707951 62707951 C A RGS19 Missense_Mutation p.D27Y 0.39 deleterious_low_confidence(0.02) benign(0.073) TCGA-XF-A9SP-01 21 10920140 10920140 T G TPTE Silent p.R372R 0.13 TCGA-XF-A9SP-01 21 34117143 34117143 C T PAXBP1 Missense_Mutation p.G717E 0.28 tolerated(0.76) benign(0.336) TCGA-XF-A9SP-01 21 34900500 34900500 C G GART Missense_Mutation p.D347H 0.33 tolerated(0.08) benign(0.307) TCGA-XF-A9SP-01 22 17288835 17288835 G C XKR3 Silent p.L43L 0.14 TCGA-XF-A9SP-01 22 21082115 21082115 G A PI4KA Missense_Mutation p.R1574C 0.13 deleterious(0) probably_damaging(0.985) TCGA-XF-A9SP-01 22 32194592 32194592 C G DEPDC5 Missense_Mutation p.S299C 0.53 deleterious(0) possibly_damaging(0.869) TCGA-XF-A9SP-01 22 36003364 36003364 C T MB Missense_Mutation p.E149K 0.33 deleterious(0.04) possibly_damaging(0.677) TCGA-XF-A9SP-01 22 45928970 45928970 G A FBLN1 Missense_Mutation p.R191Q 0.13 tolerated(0.62) possibly_damaging(0.602) TCGA-XF-A9SP-01 2 10582221 10582221 C G ODC1 Missense_Mutation p.R277T 0.10 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SP-01 2 109347808 109347808 G A RANBP2 Missense_Mutation p.D95N 0.09 deleterious(0) benign(0.001) TCGA-XF-A9SP-01 2 112940424 112940424 G A FBLN7 Missense_Mutation p.A243T 0.21 tolerated(0.61) benign(0.003) TCGA-XF-A9SP-01 2 136389334 136389334 A G R3HDM1 Missense_Mutation p.I182V 0.22 deleterious(0.03) possibly_damaging(0.46) TCGA-XF-A9SP-01 2 139310159 139310159 G A SPOPL Missense_Mutation p.D130N 0.13 tolerated(0.07) probably_damaging(0.998) TCGA-XF-A9SP-01 2 141459333 141459333 G C LRP1B Silent p.V2128V 0.10 TCGA-XF-A9SP-01 2 165584631 165584631 T G COBLL1 Missense_Mutation p.Q170P 0.28 deleterious(0) probably_damaging(0.93) TCGA-XF-A9SP-01 2 166533036 166533036 C G CSRNP3 Nonsense_Mutation p.S208* 0.25 TCGA-XF-A9SP-01 2 167760088 167760088 T C XIRP2 Silent p.H32H 0.08 TCGA-XF-A9SP-01 2 168103510 168103510 G A XIRP2 Missense_Mutation p.A1870T 0.31 benign(0.045) TCGA-XF-A9SP-01 2 174130883 174130883 C G MLTK Nonsense_Mutation p.S603* 0.77 TCGA-XF-A9SP-01 2 176983908 176983908 G T HOXD10 Missense_Mutation p.M324I 0.18 deleterious(0.01) possibly_damaging(0.838) TCGA-XF-A9SP-01 2 179590572 179590572 G C TTN Nonsense_Mutation p.S6826* 0.20 TCGA-XF-A9SP-01 2 182543346 182543346 G A NEUROD1 Missense_Mutation p.P81L 0.12 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SP-01 2 186697846 186697846 G T FSIP2 Nonsense_Mutation p.G6962* 0.16 TCGA-XF-A9SP-01 2 189870125 189870125 C A COL3A1 Missense_Mutation p.P994H 0.10 probably_damaging(0.999) TCGA-XF-A9SP-01 2 192011375 192011375 C G STAT4 Missense_Mutation p.L79F 0.11 tolerated(0.11) probably_damaging(0.938) TCGA-XF-A9SP-01 2 196762438 196762438 C A DNAH7 Missense_Mutation p.D1534Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SP-01 2 207457381 207457381 C T ADAM23 Nonsense_Mutation p.R667* 0.06 TCGA-XF-A9SP-01 2 21235182 21235182 G A APOB Silent p.L1520L 0.23 TCGA-XF-A9SP-01 2 215674209 215674209 C A BARD1 Missense_Mutation p.D29Y 0.16 deleterious(0.02) benign(0.05) TCGA-XF-A9SP-01 2 219692081 219692081 G A PRKAG3 Silent p.V297V 0.29 TCGA-XF-A9SP-01 2 231359153 231359153 T C SP100 Silent p.S541S 0.24 TCGA-XF-A9SP-01 2 234601975 234601975 C G UGT1A6 Missense_Mutation p.Q109E 0.19 tolerated(0.34) benign(0.275) TCGA-XF-A9SP-01 2 24413285 24413285 G A FAM228A Missense_Mutation p.E136K 0.23 tolerated(0.07) possibly_damaging(0.593) TCGA-XF-A9SP-01 2 32740707 32740707 C T BIRC6 Missense_Mutation p.S3740L 0.20 benign(0.024) TCGA-XF-A9SP-01 2 3604433 3604433 C G RNASEH1 Missense_Mutation p.E64Q 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-XF-A9SP-01 2 3628398 3628398 G A RPS7 Missense_Mutation p.E171K 0.25 tolerated(0.08) benign(0.008) TCGA-XF-A9SP-01 2 37229556 37229556 G C HEATR5B Missense_Mutation p.S1737C 0.23 deleterious(0) possibly_damaging(0.873) TCGA-XF-A9SP-01 2 46588116 46588116 C T EPAS1 Silent p.L222L 0.24 TCGA-XF-A9SP-01 2 63176135 63176135 C G EHBP1 Missense_Mutation p.I753M 0.11 tolerated_low_confidence(0.09) benign(0.01) TCGA-XF-A9SP-01 2 64148440 64148440 G C VPS54 Nonsense_Mutation p.S590* 0.06 TCGA-XF-A9SP-01 2 68613706 68613706 C A PLEK Nonsense_Mutation p.S182* 0.22 TCGA-XF-A9SP-01 2 68613716 68613716 C T PLEK Silent p.L185L 0.28 TCGA-XF-A9SP-01 2 71801430 71801430 C T DYSF Missense_Mutation p.R1111C 0.08 deleterious(0.03) probably_damaging(1) TCGA-XF-A9SP-01 2 76975777 76975777 C T LRRTM4 3'UTR 0.22 TCGA-XF-A9SP-01 2 76975781 76975781 C T LRRTM4 3'UTR 0.27 TCGA-XF-A9SP-01 2 76975782 76975782 C T LRRTM4 3'UTR 0.26 TCGA-XF-A9SP-01 2 86693697 86693697 G T KDM3A Nonsense_Mutation p.E404* 0.22 TCGA-XF-A9SP-01 2 98846517 98846517 C G VWA3B Missense_Mutation p.Q719E 0.22 tolerated(0.37) benign(0.003) TCGA-XF-A9SP-01 3 11685086 11685086 C T VGLL4 5'UTR 0.24 TCGA-XF-A9SP-01 3 124376385 124376385 G C KALRN Missense_Mutation p.D76H 0.22 deleterious(0) probably_damaging(0.983) TCGA-XF-A9SP-01 3 127358114 127358114 G A PODXL2 Missense_Mutation p.G33R 0.05 deleterious(0.02) possibly_damaging(0.802) TCGA-XF-A9SP-01 3 128204816 128204816 C G GATA2 Missense_Mutation p.D209H 0.32 deleterious(0.01) possibly_damaging(0.557) TCGA-XF-A9SP-01 3 136714356 136714356 C G IL20RB Silent p.L261L 0.12 TCGA-XF-A9SP-01 3 1367597 1367597 T A CNTN6 Missense_Mutation p.Y349N 0.17 deleterious(0) probably_damaging(0.982) TCGA-XF-A9SP-01 3 139173591 139173591 C T RBP2 Missense_Mutation p.E112K 0.09 deleterious(0.02) benign(0.384) TCGA-XF-A9SP-01 3 15683504 15683504 G A BTD Silent p.P133P 0.11 TCGA-XF-A9SP-01 3 157815975 157815975 T G SHOX2 Silent p.A303A 0.30 TCGA-XF-A9SP-01 3 182769955 182769955 A G MCCC1 Missense_Mutation p.V316A 0.09 deleterious(0.02) probably_damaging(0.923) TCGA-XF-A9SP-01 3 184294777 184294777 C T EPHB3 Missense_Mutation p.S387L 0.12 tolerated(0.26) benign(0.102) TCGA-XF-A9SP-01 3 195956929 195956929 C T PCYT1A 3'Flank 0.17 TCGA-XF-A9SP-01 3 28380033 28380033 C T AZI2 Missense_Mutation p.R97Q 0.13 tolerated(0.07) benign(0.206) TCGA-XF-A9SP-01 3 38049632 38049632 C G PLCD1 Silent p.T707T 0.17 TCGA-XF-A9SP-01 3 38607931 38607931 G A SCN5A Missense_Mutation p.A1270V 0.07 deleterious(0.03) possibly_damaging(0.702) TCGA-XF-A9SP-01 3 45153729 45153729 G T CDCP1 Silent p.I167I 0.11 TCGA-XF-A9SP-01 3 4683851 4683851 G A ITPR1 Missense_Mutation p.M147I 0.16 deleterious(0.02) probably_damaging(0.974) TCGA-XF-A9SP-01 3 47307254 47307254 C T KIF9 Silent p.Q294Q 0.22 TCGA-XF-A9SP-01 3 48414220 48414220 G A FBXW12 5'UTR 0.09 TCGA-XF-A9SP-01 3 48451412 48451412 C T PLXNB1 Missense_Mutation p.E1894K 0.10 deleterious(0) probably_damaging(0.983) TCGA-XF-A9SP-01 3 50144985 50144985 C T RBM5 Nonsense_Mutation p.Q342* 0.14 TCGA-XF-A9SP-01 3 50145669 50145669 C T RBM5 Missense_Mutation p.S375L 0.10 deleterious(0.05) benign(0.102) TCGA-XF-A9SP-01 3 50145735 50145735 C G RBM5 Nonsense_Mutation p.S397* 0.12 TCGA-XF-A9SP-01 3 50154473 50154473 G C RBM5 Intron 0.25 TCGA-XF-A9SP-01 3 52245381 52245381 C A ALAS1 Missense_Mutation p.F471L 0.23 deleterious(0.02) probably_damaging(1) TCGA-XF-A9SP-01 3 53381407 53381407 C G DCP1A Intron 0.43 TCGA-XF-A9SP-01 3 53381552 53381552 C G DCP1A 5'UTR 0.22 TCGA-XF-A9SP-01 3 64085197 64085197 G A PRICKLE2 Missense_Mutation p.R689C 0.16 deleterious(0) probably_damaging(0.98) TCGA-XF-A9SP-01 4 142641635 142641635 G A IL15 Missense_Mutation p.R9K 0.15 tolerated(0.46) possibly_damaging(0.459) TCGA-XF-A9SP-01 4 15538687 15538687 G C CC2D2A Missense_Mutation p.W584C 0.16 deleterious(0.03) benign(0.191) TCGA-XF-A9SP-01 4 170459006 170459006 C A NEK1 Missense_Mutation p.R540L 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 4 185329364 185329364 C G IRF2 Silent p.A159A 0.28 TCGA-XF-A9SP-01 4 186423602 186423602 T G PDLIM3 Missense_Mutation p.H314P 0.06 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 4 48486166 48486166 C A SLC10A4 Silent p.L196L 0.10 TCGA-XF-A9SP-01 4 62862019 62862019 C T LPHN3 Nonsense_Mutation p.R1015* 0.19 TCGA-XF-A9SP-01 4 62903534 62903534 C G LPHN3 Missense_Mutation p.S1158C 0.45 deleterious(0) probably_damaging(0.928) TCGA-XF-A9SP-01 4 66217176 66217176 C T EPHA5 Silent p.V813V 0.20 TCGA-XF-A9SP-01 4 86952551 86952551 C T MAPK10 Missense_Mutation p.E382K 0.23 tolerated(0.07) possibly_damaging(0.487) TCGA-XF-A9SP-01 4 90857607 90857607 G A MMRN1 Missense_Mutation p.E926K 0.06 tolerated(0.05) benign(0.016) TCGA-XF-A9SP-01 4 998117 998117 C T IDUA Missense_Mutation p.S633L 0.45 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SP-01 5 131923272 131923272 G C RAD50 Missense_Mutation p.E259Q 0.11 tolerated(0.12) benign(0.014) TCGA-XF-A9SP-01 5 13781027 13781027 C A DNAH5 Silent p.L2954L 0.17 TCGA-XF-A9SP-01 5 140348112 140348112 G A PCDHAC2 Silent p.S587S 0.29 TCGA-XF-A9SP-01 5 140531629 140531629 C T PCDHB6 Silent p.N597N 0.14 TCGA-XF-A9SP-01 5 140719309 140719309 G - PCDHGA2 Frame_Shift_Del p.G258Afs*7 0.12 TCGA-XF-A9SP-01 5 150102489 150102489 G C DCTN4 Missense_Mutation p.F303L 0.24 deleterious(0) probably_damaging(0.918) TCGA-XF-A9SP-01 5 159437854 159437854 G A TTC1 Missense_Mutation p.E107K 0.15 deleterious(0) benign(0.285) TCGA-XF-A9SP-01 5 16671022 16671022 G A MYO10 Silent p.A1832A 0.14 TCGA-XF-A9SP-01 5 24593407 24593407 C A CDH10 Nonsense_Mutation p.E65* 0.35 TCGA-XF-A9SP-01 5 34008105 34008105 G A AMACR Missense_Mutation p.S7L 0.40 tolerated(0.11) benign(0.001) TCGA-XF-A9SP-01 5 34024093 34024093 T C C1QTNF3 Missense_Mutation p.S241G 0.28 tolerated(0.11) benign(0.138) TCGA-XF-A9SP-01 5 35084740 35084740 C G PRLR Missense_Mutation p.E69Q 0.15 deleterious(0.01) benign(0.068) TCGA-XF-A9SP-01 5 43280673 43280673 G T NIM1K Missense_Mutation p.G385W 0.19 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 5 55396109 55396109 C T ANKRD55 Silent p.R582R 0.16 TCGA-XF-A9SP-01 5 71490759 71490759 C A MAP1B Missense_Mutation p.P526H 0.32 unknown(0) TCGA-XF-A9SP-01 5 75989253 75989253 G C IQGAP2 Missense_Mutation p.A1327P 0.10 tolerated(0.08) probably_damaging(0.984) TCGA-XF-A9SP-01 6 111643853 111643853 C T REV3L Missense_Mutation p.R2757K 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A9SP-01 6 127611178 127611178 G A ECHDC1 Nonsense_Mutation p.Q254* 0.14 TCGA-XF-A9SP-01 6 127901424 127901424 C A C6orf58 Missense_Mutation p.L135M 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A9SP-01 6 128294303 128294303 C G PTPRK Splice_Site p.X1384_splice 0.36 TCGA-XF-A9SP-01 6 143823506 143823506 C T FUCA2 Missense_Mutation p.E317K 0.09 tolerated(0.24) benign(0.096) TCGA-XF-A9SP-01 6 143825135 143825135 C G FUCA2 Missense_Mutation p.E223Q 0.16 deleterious(0.03) possibly_damaging(0.849) TCGA-XF-A9SP-01 6 146231621 146231621 G A SHPRH Missense_Mutation p.S1493L 0.15 deleterious(0.02) benign(0.101) TCGA-XF-A9SP-01 6 151686630 151686630 G T ZBTB2 3'UTR 0.26 TCGA-XF-A9SP-01 6 155575620 155575620 C T TIAM2 Missense_Mutation p.H1461Y 0.13 deleterious(0.04) possibly_damaging(0.487) TCGA-XF-A9SP-01 6 159049443 159049443 C T TMEM181 Silent p.I508I 0.11 TCGA-XF-A9SP-01 6 17629422 17629422 G T NUP153 Missense_Mutation p.S1003Y 0.23 deleterious(0.01) possibly_damaging(0.498) TCGA-XF-A9SP-01 6 26184245 26184245 C T HIST1H2BE Silent p.I74I 0.15 TCGA-XF-A9SP-01 6 26390936 26390936 G A BTN2A2 Splice_Site p.X318_splice 0.18 TCGA-XF-A9SP-01 6 31935047 31935047 C T SKIV2L Intron 0.28 TCGA-XF-A9SP-01 6 33288586 33288586 G A DAXX Silent p.I322I 0.22 TCGA-XF-A9SP-01 6 33289070 33289070 G C DAXX Missense_Mutation p.P161R 0.27 deleterious(0.05) possibly_damaging(0.477) TCGA-XF-A9SP-01 6 49412449 49412449 G C MUT Missense_Mutation p.Q527E 0.22 tolerated_low_confidence(1) benign(0) TCGA-XF-A9SP-01 6 51890113 51890113 G A PKHD1 Silent p.L1499L 0.18 TCGA-XF-A9SP-01 6 55039377 55039377 G C HCRTR2 5'UTR 0.13 TCGA-XF-A9SP-01 6 56362262 56362262 A C DST Missense_Mutation p.L4090R 0.09 probably_damaging(1) TCGA-XF-A9SP-01 6 57013307 57013307 C T ZNF451 Silent p.F808F 0.11 TCGA-XF-A9SP-01 6 69666612 69666612 T C BAI3 Missense_Mutation p.I479T 0.09 tolerated(0.41) benign(0.003) TCGA-XF-A9SP-01 6 74472149 74472149 A T CD109 Silent p.T267T 0.26 TCGA-XF-A9SP-01 6 83926234 83926234 G C ME1 Missense_Mutation p.L511V 0.12 tolerated(0.62) benign(0.015) TCGA-XF-A9SP-01 7 101801874 101801874 G C CUX1 Missense_Mutation p.E248Q 0.09 tolerated(0.05) unknown(0) TCGA-XF-A9SP-01 7 107408354 107408354 C G SLC26A3 Splice_Site p.X688_splice 0.15 TCGA-XF-A9SP-01 7 111927166 111927166 G A ZNF277 Intron 0.14 TCGA-XF-A9SP-01 7 112096062 112096062 G T IFRD1 Nonsense_Mutation p.E69* 0.06 TCGA-XF-A9SP-01 7 122091433 122091433 A G CADPS2 Silent p.H761H 0.11 TCGA-XF-A9SP-01 7 122759236 122759236 A G SLC13A1 Missense_Mutation p.W471R 0.06 tolerated(0.06) probably_damaging(1) TCGA-XF-A9SP-01 7 135272735 135272735 C T NUP205 Missense_Mutation p.R490C 0.14 deleterious(0) probably_damaging(0.922) TCGA-XF-A9SP-01 7 138853113 138853113 C T TTC26 Silent p.V325V 0.40 TCGA-XF-A9SP-01 7 139791700 139791700 C T KDM7A Missense_Mutation p.E879K 0.15 deleterious_low_confidence(0.02) benign(0.298) TCGA-XF-A9SP-01 7 139829356 139829356 C G KDM7A Missense_Mutation p.D166H 0.37 deleterious(0) possibly_damaging(0.771) TCGA-XF-A9SP-01 7 23776605 23776605 G A STK31 Missense_Mutation p.E309K 0.22 tolerated(0.07) probably_damaging(0.96) TCGA-XF-A9SP-01 7 24745822 24745822 G C DFNA5 Missense_Mutation p.F388L 0.15 tolerated(0.68) benign(0.022) TCGA-XF-A9SP-01 7 27570820 27570820 G C HIBADH Silent p.L281L 0.10 TCGA-XF-A9SP-01 7 4839058 4839058 G A RADIL Missense_Mutation p.S1060F 0.05 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SP-01 7 5568131 5568131 C T ACTB Missense_Mutation p.E195K 0.25 deleterious_low_confidence(0.02) benign(0.131) TCGA-XF-A9SP-01 7 5568978 5568978 C G ACTB Missense_Mutation p.Q59H 0.21 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-XF-A9SP-01 7 5568986 5568986 C T ACTB Missense_Mutation p.E57K 0.17 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-XF-A9SP-01 7 77569961 77569961 C T PHTF2 Silent p.L585L 0.21 TCGA-XF-A9SP-01 7 86795817 86795817 C T DMTF1 Missense_Mutation p.S43L 0.37 deleterious_low_confidence(0) benign(0.409) TCGA-XF-A9SP-01 8 104330971 104330971 G A FZD6 Missense_Mutation p.D111N 0.13 tolerated(1) benign(0.278) TCGA-XF-A9SP-01 8 109462049 109462049 C T EMC2 Intron 0.49 TCGA-XF-A9SP-01 8 110592184 110592184 C T SYBU Missense_Mutation p.G193D 0.09 deleterious(0.03) possibly_damaging(0.844) TCGA-XF-A9SP-01 8 110980770 110980770 G A KCNV1 Silent p.L350L 0.12 TCGA-XF-A9SP-01 8 125555400 125555400 G A NDUFB9 Silent p.A58A 0.11 TCGA-XF-A9SP-01 8 125989664 125989664 G C ZNF572 Missense_Mutation p.R385T 0.36 tolerated(0.17) benign(0.034) TCGA-XF-A9SP-01 8 133829167 133829167 C G PHF20L1 Missense_Mutation p.F406L 0.14 tolerated_low_confidence(0.45) benign(0.031) TCGA-XF-A9SP-01 8 142432330 142432330 C T PTP4A3 5'UTR 0.16 TCGA-XF-A9SP-01 8 146015184 146015184 C G RPL8 3'UTR 0.11 TCGA-XF-A9SP-01 8 40011207 40011207 C T C8orf4 Silent p.F52F 0.15 TCGA-XF-A9SP-01 8 41545700 41545700 G A ANK1 Missense_Mutation p.S1452L 0.48 tolerated(0.11) benign(0.223) TCGA-XF-A9SP-01 8 42587514 42587514 G A CHRNB3 Missense_Mutation p.R355H 0.30 deleterious(0.04) benign(0.032) TCGA-XF-A9SP-01 8 71581315 71581315 C G LACTB2 Missense_Mutation p.R14P 0.23 deleterious(0) possibly_damaging(0.732) TCGA-XF-A9SP-01 8 80523414 80523414 G A STMN2 5'UTR 0.11 TCGA-XF-A9SP-01 8 95942801 95942801 C T TP53INP1 Missense_Mutation p.R210H 0.09 deleterious(0.01) benign(0.342) TCGA-XF-A9SP-01 9 101606467 101606467 C G GALNT12 Silent p.L478L 0.35 TCGA-XF-A9SP-01 9 125140275 125140275 C T PTGS1 Silent p.S64S 0.08 TCGA-XF-A9SP-01 9 130488527 130488527 G A TTC16 Silent p.Q423Q 0.41 TCGA-XF-A9SP-01 9 27289694 27289694 C A EQTN Missense_Mutation p.D153Y 0.07 deleterious(0) probably_damaging(0.923) TCGA-XF-A9SP-01 9 32635142 32635142 C T TAF1L Missense_Mutation p.D146N 0.18 tolerated(0.11) probably_damaging(0.968) TCGA-XF-A9SP-01 9 35732887 35732887 C T CREB3 Missense_Mutation p.P40S 0.22 tolerated(0.48) benign(0.161) TCGA-XF-A9SP-01 9 39086802 39086802 C T CNTNAP3 Missense_Mutation p.D1089N 0.17 tolerated(0.05) probably_damaging(0.987) TCGA-XF-A9SP-01 9 5924783 5924783 C G KIAA2026 Missense_Mutation p.R854T 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-XF-A9SP-01 9 94486156 94486156 C T ROR2 Missense_Mutation p.V874I 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-XF-A9SP-01 X 100871339 100871339 C T ARMCX6 Missense_Mutation p.G91E 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SP-01 X 117743312 117743312 G A DOCK11 Silent p.K983K 0.38 TCGA-XF-A9SP-01 X 142716795 142716795 C G SLITRK4 Missense_Mutation p.M710I 0.27 tolerated(0.2) benign(0.004) TCGA-XF-A9SP-01 X 144909442 144909442 C G TMEM257 Missense_Mutation p.H83D 0.22 deleterious_low_confidence(0.01) benign(0.402) TCGA-XF-A9SP-01 X 1460652 1460652 G A IL3RA 5'UTR 0.33 TCGA-XF-A9SP-01 X 152958604 152958604 G C SLC6A8 Missense_Mutation p.D296H 0.27 deleterious(0) probably_damaging(0.978) TCGA-XF-A9SP-01 X 69478964 69478964 G A P2RY4 Silent p.L171L 0.29 TCGA-XF-A9SP-01 X 69479118 69479118 G A P2RY4 Silent p.L119L 0.30 TCGA-XF-A9SP-01 X 69699075 69699075 G A DLG3 Missense_Mutation p.G494E 0.40 deleterious(0) benign(0.072) TCGA-XF-A9SP-01 X 73041822 73041822 G A XIST RNA 0.43 TCGA-XF-A9ST-01 10 101151218 101151218 C T CNNM1 Missense_Mutation p.P934L 0.65 tolerated_low_confidence(0.12) benign(0.002) TCGA-XF-A9ST-01 10 102743827 102743827 G C SEMA4G Missense_Mutation p.R824P 0.12 deleterious(0) probably_damaging(0.916) TCGA-XF-A9ST-01 10 103565822 103565822 C G MGEA5 Missense_Mutation p.G244A 0.13 tolerated(0.22) possibly_damaging(0.803) TCGA-XF-A9ST-01 10 104176513 104176513 C T PSD Missense_Mutation p.G95R 0.16 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-XF-A9ST-01 10 104248819 104248819 C T ACTR1A Splice_Site p.X63_splice 0.04 TCGA-XF-A9ST-01 10 112360240 112360240 T C SMC3 Missense_Mutation p.I824T 0.74 tolerated(0.57) benign(0.004) TCGA-XF-A9ST-01 10 112769042 112769042 C T SHOC2 Missense_Mutation p.P441S 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-XF-A9ST-01 10 113941514 113941514 G A GPAM Missense_Mutation p.T10I 0.16 deleterious_low_confidence(0.04) benign(0.068) TCGA-XF-A9ST-01 10 1142135 1142135 C T WDR37 Silent p.I225I 0.51 TCGA-XF-A9ST-01 10 115947590 115947590 G C TDRD1 5'UTR 0.16 TCGA-XF-A9ST-01 10 116059052 116059052 G A AFAP1L2 Missense_Mutation p.R694W 0.17 deleterious(0) probably_damaging(0.953) TCGA-XF-A9ST-01 10 116621095 116621095 T - FAM160B1 Splice_Site p.X731_splice 0.19 TCGA-XF-A9ST-01 10 118355736 118355736 G C PNLIPRP1 Missense_Mutation p.S159T 0.17 deleterious(0.01) benign(0.012) TCGA-XF-A9ST-01 10 124739985 124739985 C A PSTK 5'UTR 0.75 TCGA-XF-A9ST-01 10 124740055 124740055 C G PSTK Silent p.L20L 0.63 TCGA-XF-A9ST-01 10 135123667 135123667 G T ZNF511 Splice_Site p.X144_splice 0.75 TCGA-XF-A9ST-01 10 16932423 16932423 A T CUBN Missense_Mutation p.V2901D 0.24 tolerated(0.24) probably_damaging(0.984) TCGA-XF-A9ST-01 10 28342948 28342948 C T MPP7 3'UTR 0.54 TCGA-XF-A9ST-01 10 34985320 34985320 G A PARD3 Missense_Mutation p.R50C 0.50 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 10 38241938 38241938 C G ZNF25 Missense_Mutation p.R163T 0.55 tolerated(0.6) benign(0.004) TCGA-XF-A9ST-01 10 51225487 51225487 C T AGAP8 Missense_Mutation p.D499N 0.53 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 10 5226980 5226980 C G AKR1CL1 Missense_Mutation p.D30H 0.50 tolerated(0.06) possibly_damaging(0.672) TCGA-XF-A9ST-01 10 54048513 54048513 G A PRKG1 Missense_Mutation p.M579I 0.55 tolerated(0.08) probably_damaging(0.919) TCGA-XF-A9ST-01 10 61413839 61413839 G A SLC16A9 Silent p.L315L 0.36 TCGA-XF-A9ST-01 10 61832706 61832706 C G ANK3 Missense_Mutation p.E2645Q 0.49 benign(0.102) TCGA-XF-A9ST-01 10 63851258 63851258 A G ARID5B Missense_Mutation p.Y679C 0.27 deleterious(0) probably_damaging(0.993) TCGA-XF-A9ST-01 10 70252893 70252893 A C SLC25A16 Nonsense_Mutation p.Y202* 0.27 TCGA-XF-A9ST-01 10 70451663 70451663 C T TET1 3'UTR 0.17 TCGA-XF-A9ST-01 10 71146132 71146132 C G HK1 Missense_Mutation p.H635Q 0.16 tolerated(0.73) benign(0.002) TCGA-XF-A9ST-01 10 7205664 7205664 G T SFMBT2 3'UTR 0.27 TCGA-XF-A9ST-01 10 72520317 72520317 C T ADAMTS14 Missense_Mutation p.P1130L 0.19 tolerated(0.15) benign(0.002) TCGA-XF-A9ST-01 10 72635217 72635217 C G SGPL1 Missense_Mutation p.L453V 0.26 tolerated(0.2) benign(0.158) TCGA-XF-A9ST-01 10 81051984 81051984 C T ZMIZ1 Silent p.F276F 0.26 TCGA-XF-A9ST-01 10 90697844 90697844 G C ACTA2 Missense_Mutation p.L322V 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-XF-A9ST-01 10 91061813 91061813 G A IFIT2 5'UTR 0.52 TCGA-XF-A9ST-01 10 99968466 99968466 G A R3HCC1L Missense_Mutation p.E199K 0.30 tolerated(0.15) benign(0.081) TCGA-XF-A9ST-01 11 102398304 102398304 C T MMP7 Silent p.R145R 0.16 TCGA-XF-A9ST-01 11 102573704 102573704 G A MMP27 Nonsense_Mutation p.R163* 0.20 TCGA-XF-A9ST-01 11 103270424 103270424 C G DYNC2H1 Missense_Mutation p.P4071A 0.67 possibly_damaging(0.544) TCGA-XF-A9ST-01 11 105797526 105797526 C T GRIA4 Missense_Mutation p.S636L 0.32 deleterious(0) probably_damaging(0.995) TCGA-XF-A9ST-01 11 116730000 116730000 C T SIK3 Missense_Mutation p.D810N 0.47 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-XF-A9ST-01 11 117376238 117376238 C G DSCAML1 Missense_Mutation p.G725R 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 11 118064959 118064959 G A AMICA1 3'UTR 0.71 TCGA-XF-A9ST-01 11 118064972 118064972 G C AMICA1 3'UTR 0.62 TCGA-XF-A9ST-01 11 118452116 118452116 T C ARCN1 Silent p.S53S 0.30 TCGA-XF-A9ST-01 11 118967723 118967723 G C DPAGT1 Silent p.L404L 0.52 TCGA-XF-A9ST-01 11 124757040 124757040 G - ROBO4 Frame_Shift_Del p.C757Afs*37 0.33 TCGA-XF-A9ST-01 11 126215400 126215400 C G DCPS Missense_Mutation p.I302M 0.28 deleterious(0.04) probably_damaging(0.933) TCGA-XF-A9ST-01 11 133794736 133794736 T A IGSF9B Missense_Mutation p.I700F 0.21 deleterious(0.03) possibly_damaging(0.742) TCGA-XF-A9ST-01 11 15994390 15994390 C A SOX6 Nonsense_Mutation p.E798* 0.39 TCGA-XF-A9ST-01 11 30925102 30925102 C T DCDC1 Silent p.Q1479Q 0.33 TCGA-XF-A9ST-01 11 34904274 34904274 C G APIP Missense_Mutation p.G240A 0.46 tolerated_low_confidence(0.08) benign(0.32) TCGA-XF-A9ST-01 11 3742045 3742045 G A NUP98 Silent p.L719L 0.33 TCGA-XF-A9ST-01 11 381690 381690 G T B4GALNT4 Missense_Mutation p.E1006D 0.62 deleterious(0.01) unknown(0) TCGA-XF-A9ST-01 11 4615891 4615891 C G OR52I1 Missense_Mutation p.S208C 0.25 tolerated(0.07) probably_damaging(0.992) TCGA-XF-A9ST-01 11 46637488 46637488 C T HARBI1 Missense_Mutation p.M100I 0.42 tolerated(0.05) benign(0.112) TCGA-XF-A9ST-01 11 46726111 46726119 CAGTGGAGC - ZNF408 In_Frame_Del p.G289_S291del 0.44 TCGA-XF-A9ST-01 11 4673913 4673913 C T OR51E1 Missense_Mutation p.R53W 0.11 deleterious(0.02) benign(0.006) TCGA-XF-A9ST-01 11 56114282 56114282 G T OR8K1 Missense_Mutation p.M256I 0.78 tolerated_low_confidence(0.12) benign(0.003) TCGA-XF-A9ST-01 11 61124113 61124113 T C CYB561A3 Missense_Mutation p.I42V 0.60 tolerated(0.98) benign(0.002) TCGA-XF-A9ST-01 11 62381034 62381034 C G ROM1 Missense_Mutation p.P94R 0.83 deleterious(0.01) probably_damaging(0.939) TCGA-XF-A9ST-01 11 62462175 62462175 C T BSCL2 Missense_Mutation p.M165I 0.37 tolerated(0.06) possibly_damaging(0.535) TCGA-XF-A9ST-01 11 6292266 6292266 C - CCKBR Frame_Shift_Del p.R280Gfs*27 0.30 TCGA-XF-A9ST-01 11 63971086 63971086 A T STIP1 Silent p.A517A 0.22 TCGA-XF-A9ST-01 11 64954758 64954758 G T CAPN1 Missense_Mutation p.G278W 0.27 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 11 65268252 65268252 C T MALAT1 RNA 0.14 TCGA-XF-A9ST-01 11 65268417 65268431 GTCTGAAGCTTTTGA - MALAT1 RNA 0.83 TCGA-XF-A9ST-01 11 65271182 65271191 TCTTCTCTAA - MALAT1 RNA 0.19 TCGA-XF-A9ST-01 11 66102403 66102403 C T RIN1 Silent p.R289R 0.58 TCGA-XF-A9ST-01 11 71707249 71707249 G A RNF121 Missense_Mutation p.R291K 0.17 tolerated(0.78) possibly_damaging(0.745) TCGA-XF-A9ST-01 11 74988493 74988493 C T ARRB1 Splice_Site p.X207_splice 0.17 TCGA-XF-A9ST-01 11 82698496 82698496 G A RAB30 Intron 0.42 TCGA-XF-A9ST-01 11 82698497 82698497 A T RAB30 Intron 0.42 TCGA-XF-A9ST-01 11 88258484 88258484 T C GRM5 Missense_Mutation p.M907V 0.51 tolerated_low_confidence(0.72) benign(0.002) TCGA-XF-A9ST-01 11 88300391 88300391 C T GRM5 Silent p.P820P 0.56 TCGA-XF-A9ST-01 11 9052473 9052473 C T SCUBE2 Splice_Site p.X668_splice 0.27 TCGA-XF-A9ST-01 11 92085300 92085300 T C FAT3 Missense_Mutation p.C8R 0.29 benign(0) TCGA-XF-A9ST-01 11 94278565 94278565 C T FUT4 Silent p.I422I 0.38 TCGA-XF-A9ST-01 11 95583871 95583871 G C MTMR2 Missense_Mutation p.R233G 0.20 tolerated(0.31) benign(0.001) TCGA-XF-A9ST-01 11 9597639 9597639 G C WEE1 Missense_Mutation p.D261H 0.51 deleterious(0.01) possibly_damaging(0.728) TCGA-XF-A9ST-01 11 96117503 96117503 G A CCDC82 Missense_Mutation p.L137F 0.19 tolerated(0.08) unknown(0) TCGA-XF-A9ST-01 12 101777390 101777405 CTCCCAATGATCATAG - UTP20 Frame_Shift_Del p.P2668Lfs*17 0.28 TCGA-XF-A9ST-01 12 105198897 105198897 C A SLC41A2 3'UTR 0.20 TCGA-XF-A9ST-01 12 106729516 106729516 C G TCP11L2 Missense_Mutation p.S291C 0.25 deleterious(0.02) probably_damaging(0.937) TCGA-XF-A9ST-01 12 107937750 107937750 C G BTBD11 Missense_Mutation p.L442V 0.22 tolerated(0.09) probably_damaging(0.996) TCGA-XF-A9ST-01 12 108128143 108128143 T C PRDM4 Silent p.K750K 0.19 TCGA-XF-A9ST-01 12 108626557 108626557 C T WSCD2 Silent p.L343L 0.31 TCGA-XF-A9ST-01 12 113759133 113759133 C G SLC8B1 Silent p.L59L 0.34 TCGA-XF-A9ST-01 12 118588743 118588743 T C TAOK3 3'UTR 0.46 TCGA-XF-A9ST-01 12 120518740 120518740 G C CCDC64 Missense_Mutation p.R453P 0.17 deleterious(0.01) benign(0.385) TCGA-XF-A9ST-01 12 121454196 121454196 C T C12orf43 Missense_Mutation p.E28K 0.75 deleterious(0.03) benign(0.017) TCGA-XF-A9ST-01 12 121883152 121883152 C G KDM2B Missense_Mutation p.E677Q 0.14 tolerated(0.13) benign(0.015) TCGA-XF-A9ST-01 12 123057774 123057774 G A KNTC1 Missense_Mutation p.R742K 0.07 tolerated(0.72) probably_damaging(0.931) TCGA-XF-A9ST-01 12 123307996 123307996 C G CCDC62 3'UTR 0.15 TCGA-XF-A9ST-01 12 123706055 123706055 C G MPHOSPH9 Missense_Mutation p.E94Q 0.64 tolerated(0.33) benign(0.05) TCGA-XF-A9ST-01 12 124303598 124303598 G T DNAH10 Missense_Mutation p.K1176N 0.36 benign(0.118) TCGA-XF-A9ST-01 12 124420052 124420052 A G DNAH10 3'UTR 0.34 TCGA-XF-A9ST-01 12 133196438 133196438 G C P2RX2 Missense_Mutation p.R130S 0.24 tolerated(0.64) benign(0.087) TCGA-XF-A9ST-01 12 20852615 20852615 G - SLCO1C1 Frame_Shift_Del p.K35Nfs*8 0.24 TCGA-XF-A9ST-01 12 20864418 20864418 A - SLCO1C1 Frame_Shift_Del p.K169Nfs*6 0.25 TCGA-XF-A9ST-01 12 21652516 21652516 C T RECQL 5'UTR 0.44 TCGA-XF-A9ST-01 12 28116418 28116418 C T PTHLH Silent p.K129K 0.44 TCGA-XF-A9ST-01 12 44166092 44166092 G C IRAK4 Missense_Mutation p.Q139H 0.42 tolerated(0.13) benign(0.429) TCGA-XF-A9ST-01 12 46764395 46764395 A - SLC38A2 Frame_Shift_Del p.S72Pfs*9 0.25 TCGA-XF-A9ST-01 12 47172540 47172540 T C SLC38A4 Missense_Mutation p.Q246R 0.53 deleterious(0.01) possibly_damaging(0.875) TCGA-XF-A9ST-01 12 4854667 4854667 T G GALNT8 Silent p.R311R 0.10 TCGA-XF-A9ST-01 12 4872491 4872491 G C GALNT8 Missense_Mutation p.D478H 0.31 deleterious(0.03) probably_damaging(1) TCGA-XF-A9ST-01 12 49691480 49691480 C G PRPH Missense_Mutation p.S413C 0.59 deleterious(0) possibly_damaging(0.894) TCGA-XF-A9ST-01 12 50488355 50488355 G A SMARCD1 Silent p.K423K 0.32 TCGA-XF-A9ST-01 12 51461711 51461711 G C CSRNP2 Silent p.G151G 0.25 TCGA-XF-A9ST-01 12 52758859 52758859 G A KRT85 Silent p.F172F 0.44 TCGA-XF-A9ST-01 12 53215731 53215731 C A KRT79 Missense_Mutation p.K511N 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.722) TCGA-XF-A9ST-01 12 53553411 53553411 G A CSAD Missense_Mutation p.S462L 0.29 tolerated(0.21) benign(0.131) TCGA-XF-A9ST-01 12 53663738 53663738 G A ESPL1 Missense_Mutation p.E338K 0.39 deleterious(0.01) possibly_damaging(0.611) TCGA-XF-A9ST-01 12 56574880 56574880 G A SMARCC2 Missense_Mutation p.S321L 0.12 tolerated(0.05) benign(0.307) TCGA-XF-A9ST-01 12 57552351 57552351 C T LRP1 Silent p.A576A 0.42 TCGA-XF-A9ST-01 12 57574576 57574576 A C LRP1 Missense_Mutation p.E1838A 0.11 possibly_damaging(0.524) TCGA-XF-A9ST-01 12 57627603 57627603 G A SHMT2 Missense_Mutation p.V399M 0.37 deleterious(0.03) possibly_damaging(0.625) TCGA-XF-A9ST-01 12 57638328 57638328 C G STAC3 Silent p.L266L 0.11 TCGA-XF-A9ST-01 12 57642507 57642507 C G STAC3 Missense_Mutation p.Q138H 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 12 57861968 57861968 C G GLI1 Missense_Mutation p.I423M 0.18 tolerated(0.21) benign(0.128) TCGA-XF-A9ST-01 12 64784273 64784273 G A C12orf56 Silent p.L25L 0.69 TCGA-XF-A9ST-01 12 69229661 69229661 C T MDM2 Missense_Mutation p.S246L 0.33 deleterious(0) possibly_damaging(0.848) TCGA-XF-A9ST-01 12 7046007 7046007 A G ATN1 Missense_Mutation p.H526R 0.33 probably_damaging(0.954) TCGA-XF-A9ST-01 12 72050733 72050733 C T ZFC3H1 Missense_Mutation p.R316H 0.18 deleterious(0.01) possibly_damaging(0.845) TCGA-XF-A9ST-01 12 7241944 7241944 T G C1R Missense_Mutation p.E237A 0.22 deleterious(0.01) possibly_damaging(0.759) TCGA-XF-A9ST-01 12 7241973 7241973 C A C1R Silent p.R227R 0.22 TCGA-XF-A9ST-01 12 88568405 88568405 G A TMTC3 Nonsense_Mutation p.W407* 0.46 TCGA-XF-A9ST-01 12 89744742 89744742 G C DUSP6 Missense_Mutation p.S154W 0.40 deleterious(0.01) possibly_damaging(0.886) TCGA-XF-A9ST-01 12 95676273 95676273 G A VEZT Missense_Mutation p.R394H 0.52 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 12 9994481 9994481 G C KLRF1 Missense_Mutation p.W136C 0.38 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 13 107148121 107148121 C A EFNB2 Missense_Mutation p.M158I 0.19 deleterious(0) probably_damaging(0.973) TCGA-XF-A9ST-01 13 111532220 111532220 C G ANKRD10 Missense_Mutation p.E343Q 0.09 tolerated(0.07) possibly_damaging(0.762) TCGA-XF-A9ST-01 13 113862925 113862925 C T PCID2 Silent p.Q8Q 0.14 TCGA-XF-A9ST-01 13 114134912 114134912 G C DCUN1D2 Missense_Mutation p.L123V 0.15 tolerated(1) benign(0.001) TCGA-XF-A9ST-01 13 115057172 115057172 G T UPF3A Nonsense_Mutation p.E251* 0.65 TCGA-XF-A9ST-01 13 25448250 25448250 A G RNF17 Splice_Site p.X1483_splice 0.49 TCGA-XF-A9ST-01 13 25744590 25744590 C T AMER2 Missense_Mutation p.E390K 0.24 deleterious(0.01) benign(0.428) TCGA-XF-A9ST-01 13 31036814 31036814 G A HMGB1 Missense_Mutation p.P111L 0.09 deleterious(0.04) benign(0.394) TCGA-XF-A9ST-01 13 32709248 32709248 C G FRY Silent p.P335P 0.48 TCGA-XF-A9ST-01 13 37596284 37596284 A G SUPT20H Intron 0.32 TCGA-XF-A9ST-01 13 42044652 42044652 G T RGCC 3'UTR 0.65 TCGA-XF-A9ST-01 13 42877872 42877872 C G AKAP11 Missense_Mutation p.R1664G 0.27 tolerated(0.18) benign(0.114) TCGA-XF-A9ST-01 13 45768563 45768563 T C KCTD4 Missense_Mutation p.Q47R 0.90 tolerated(0.05) benign(0.022) TCGA-XF-A9ST-01 13 48881488 48881489 - AG RB1 Frame_Shift_Ins p.A74Efs*4 0.82 TCGA-XF-A9ST-01 13 49775950 49775950 A G FNDC3A Missense_Mutation p.Y1001C 0.97 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 13 52026688 52026688 G C INTS6 5'UTR 0.95 TCGA-XF-A9ST-01 13 52026761 52026761 G A INTS6 5'UTR 0.90 TCGA-XF-A9ST-01 13 52857442 52857442 G A RP11-248G5.8 RNA 0.20 TCGA-XF-A9ST-01 13 53232563 53232563 G A SUGT1 Missense_Mutation p.E73K 0.16 tolerated(0.28) benign(0.008) TCGA-XF-A9ST-01 13 73482708 73482708 G C PIBF1 Missense_Mutation p.E510Q 0.15 tolerated(0.11) probably_damaging(0.994) TCGA-XF-A9ST-01 13 77631124 77631124 G C MYCBP2 Missense_Mutation p.C4440W 0.15 probably_damaging(0.997) TCGA-XF-A9ST-01 13 77759261 77759261 C T MYCBP2 Missense_Mutation p.D1528N 0.11 probably_damaging(0.987) TCGA-XF-A9ST-01 14 104165908 104165909 - GTGTCC XRCC3 In_Frame_Ins p.D188_T189dup 0.86 TCGA-XF-A9ST-01 14 20876465 20876466 - GGATATTC TEP1 Frame_Shift_Ins p.L45Rfs*6 0.64 TCGA-XF-A9ST-01 14 21780021 21780021 C G RPGRIP1 Silent p.L323L 0.93 TCGA-XF-A9ST-01 14 23374560 23374560 G T RBM23 Missense_Mutation p.F186L 0.94 deleterious(0) probably_damaging(0.969) TCGA-XF-A9ST-01 14 23586978 23586978 G C CEBPE Silent p.S188S 0.23 TCGA-XF-A9ST-01 14 23598904 23598904 C T SLC7A8 Silent p.Q406Q 0.95 TCGA-XF-A9ST-01 14 24036583 24036583 C T AP1G2 5'UTR 0.80 TCGA-XF-A9ST-01 14 24682657 24682657 C G CHMP4A Missense_Mutation p.G40R 0.39 tolerated(0.19) benign(0.088) TCGA-XF-A9ST-01 14 31856458 31856458 C G HEATR5A Missense_Mutation p.D60H 0.15 deleterious(0) probably_damaging(0.993) TCGA-XF-A9ST-01 14 35497299 35497299 G A SRP54 Missense_Mutation p.D445N 1.00 tolerated(0.37) benign(0.006) TCGA-XF-A9ST-01 14 50088401 50088401 C T MGAT2 Nonsense_Mutation p.R139* 0.58 TCGA-XF-A9ST-01 14 55900345 55900345 T A TBPL2 Intron 0.26 TCGA-XF-A9ST-01 14 59793312 59793312 A G DAAM1 Missense_Mutation p.Q420R 0.90 tolerated(0.43) unknown(0) TCGA-XF-A9ST-01 14 61857985 61857985 C A PRKCH Missense_Mutation p.L136I 0.30 deleterious(0.01) benign(0.057) TCGA-XF-A9ST-01 14 71267452 71267452 C G MAP3K9 Missense_Mutation p.R251T 0.32 tolerated(0.07) benign(0.044) TCGA-XF-A9ST-01 14 77929063 77929063 A G AHSA1 Missense_Mutation p.R145G 0.35 deleterious(0) possibly_damaging(0.876) TCGA-XF-A9ST-01 14 77941933 77941933 C T ISM2 3'UTR 0.29 TCGA-XF-A9ST-01 14 93278101 93278101 T G GOLGA5 Splice_Site p.X440_splice 0.37 TCGA-XF-A9ST-01 15 101983780 101983780 A G PCSK6 Missense_Mutation p.F127S 0.30 tolerated(0.36) benign(0.198) TCGA-XF-A9ST-01 15 23890959 23890959 T A MAGEL2 Missense_Mutation p.Q41L 0.33 deleterious_low_confidence(0) benign(0.058) TCGA-XF-A9ST-01 15 25953413 25953413 C G ATP10A Silent p.R793R 0.40 TCGA-XF-A9ST-01 15 26107941 26107941 C T ATP10A Silent p.P101P 0.50 TCGA-XF-A9ST-01 15 28483309 28483309 T C HERC2 Missense_Mutation p.E1268G 0.44 benign(0.339) TCGA-XF-A9ST-01 15 34654788 34654788 C T LPCAT4 Silent p.Q290Q 0.44 TCGA-XF-A9ST-01 15 41340453 41340453 T A INO80 Silent p.P866P 0.44 TCGA-XF-A9ST-01 15 41482164 41482164 C T EXD1 Missense_Mutation p.G285R 0.21 deleterious(0.05) benign(0.077) TCGA-XF-A9ST-01 15 42743140 42743140 C G ZNF106 Missense_Mutation p.D421H 0.05 deleterious(0) possibly_damaging(0.607) TCGA-XF-A9ST-01 15 50545856 50545856 G T HDC Missense_Mutation p.A243E 0.28 deleterious(0) probably_damaging(0.992) TCGA-XF-A9ST-01 15 52181290 52181290 G C TMOD3 Missense_Mutation p.K148N 0.15 deleterious(0.01) benign(0.001) TCGA-XF-A9ST-01 15 58357781 58357781 A C ALDH1A2 Missense_Mutation p.L23R 0.40 tolerated_low_confidence(0.29) benign(0.221) TCGA-XF-A9ST-01 15 65897516 65897516 C T VWA9 Missense_Mutation p.G37D 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-XF-A9ST-01 15 66191219 66191219 C A MEGF11 Nonsense_Mutation p.E941* 0.43 TCGA-XF-A9ST-01 15 72338831 72338843 ATAGCCCCAGGAT - MYO9A Frame_Shift_Del p.Y21Ffs*21 0.12 TCGA-XF-A9ST-01 15 73029818 73029818 G T BBS4 Splice_Site p.X484_splice 0.43 TCGA-XF-A9ST-01 15 75197510 75197510 G T FAM219B Missense_Mutation p.S122Y 0.68 deleterious(0.03) probably_damaging(0.999) TCGA-XF-A9ST-01 15 78923446 78923446 A G CHRNB4 Missense_Mutation p.W111R 0.21 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 15 79220067 79220067 G A CTSH Silent p.A229A 0.62 TCGA-XF-A9ST-01 15 83518458 83518458 C T HOMER2 3'UTR 0.70 TCGA-XF-A9ST-01 16 11097069 11097069 A G CLEC16A Missense_Mutation p.K404E 0.32 tolerated(0.64) benign(0.002) TCGA-XF-A9ST-01 16 16259769 16259769 A G ABCC6 Missense_Mutation p.M1006T 0.58 tolerated(0.87) benign(0.003) TCGA-XF-A9ST-01 16 1741902 1741902 G C HN1L Silent p.L84L 0.62 TCGA-XF-A9ST-01 16 1995614 1995614 G C RPL3L Silent p.L351L 0.28 TCGA-XF-A9ST-01 16 2012198 2012198 G T RPS2 Missense_Mutation p.F261L 0.29 tolerated(0.3) benign(0.004) TCGA-XF-A9ST-01 16 20482441 20482441 G A ACSM2A Missense_Mutation p.A215T 0.20 tolerated(0.14) benign(0.009) TCGA-XF-A9ST-01 16 22262572 22262572 G C EEF2K Missense_Mutation p.E183Q 0.33 tolerated(0.09) possibly_damaging(0.897) TCGA-XF-A9ST-01 16 23722243 23722243 G A ERN2 Silent p.L112L 0.29 TCGA-XF-A9ST-01 16 24196436 24196436 T A PRKCB Missense_Mutation p.I513N 0.62 deleterious(0) probably_damaging(0.989) TCGA-XF-A9ST-01 16 24372900 24372900 G T CACNG3 Missense_Mutation p.A222S 0.53 tolerated(0.44) benign(0.001) TCGA-XF-A9ST-01 16 24805971 24805971 T C TNRC6A Silent p.N1153N 0.43 TCGA-XF-A9ST-01 16 28513303 28513303 G C IL27 Silent p.R152R 0.33 TCGA-XF-A9ST-01 16 29469316 29469316 G A SLX1B Missense_Mutation p.E260K 0.21 tolerated(0.39) benign(0.111) TCGA-XF-A9ST-01 16 30982751 30982751 A T SETD1A Silent p.S1023S 0.23 TCGA-XF-A9ST-01 16 4382276 4382276 C T GLIS2 5'UTR 0.45 TCGA-XF-A9ST-01 16 51172928 51172928 G C SALL1 Missense_Mutation p.P1069A 0.24 deleterious(0.03) benign(0.003) TCGA-XF-A9ST-01 16 57600606 57600606 C G GPR114 Silent p.P214P 0.37 TCGA-XF-A9ST-01 16 67180251 67180251 G C C16orf70 Missense_Mutation p.E394Q 0.22 deleterious(0.01) possibly_damaging(0.831) TCGA-XF-A9ST-01 16 67331439 67331439 C G KCTD19 Missense_Mutation p.E372Q 0.22 tolerated(0.09) benign(0.4) TCGA-XF-A9ST-01 16 70349790 70349790 T A DDX19B Intron 0.21 TCGA-XF-A9ST-01 16 70902582 70902582 A G HYDIN Missense_Mutation p.M3734T 0.31 benign(0) TCGA-XF-A9ST-01 16 75654569 75654569 T A ADAT1 Silent p.P43P 0.20 TCGA-XF-A9ST-01 16 84209560 84209560 G T DNAAF1 Nonsense_Mutation p.E574* 0.47 TCGA-XF-A9ST-01 16 84402204 84402204 C G ATP2C2 5'UTR 0.30 TCGA-XF-A9ST-01 16 89846364 89846364 G C FANCA Missense_Mutation p.P543R 0.51 tolerated(0.05) possibly_damaging(0.804) TCGA-XF-A9ST-01 17 17697955 17697955 T C RAI1 Missense_Mutation p.S565P 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 17 18061060 18061060 G C MYO15A Missense_Mutation p.G2938A 0.45 unknown(0) TCGA-XF-A9ST-01 17 21319666 21319666 T A KCNJ12 Missense_Mutation p.Y338N 0.36 deleterious(0) probably_damaging(0.994) TCGA-XF-A9ST-01 17 2266191 2266191 C G SGSM2 Missense_Mutation p.S173C 0.89 deleterious(0.01) benign(0.026) TCGA-XF-A9ST-01 17 26499590 26499590 G C NLK Missense_Mutation p.M365I 0.17 tolerated(0.35) benign(0.206) TCGA-XF-A9ST-01 17 26874708 26874708 G A UNC119 Silent p.L199L 0.38 TCGA-XF-A9ST-01 17 27068432 27068432 G A NEK8 Silent p.E631E 0.32 TCGA-XF-A9ST-01 17 27807432 27807432 A G TAOK1 Missense_Mutation p.K166E 0.41 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 17 28539850 28539850 G C SLC6A4 Missense_Mutation p.T371R 0.09 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 17 28543194 28543194 G C SLC6A4 Missense_Mutation p.S293C 0.20 tolerated(0.08) possibly_damaging(0.608) TCGA-XF-A9ST-01 17 30533948 30533948 C A RHOT1 Nonsense_Mutation p.S479* 0.26 TCGA-XF-A9ST-01 17 34883425 34883425 G A MYO19 Missense_Mutation p.S86L 0.16 deleterious(0.04) benign(0.016) TCGA-XF-A9ST-01 17 35454887 35454887 C G ACACA Missense_Mutation p.E2200Q 0.25 tolerated(0.2) benign(0.311) TCGA-XF-A9ST-01 17 36484226 36484226 C G GPR179 Missense_Mutation p.E1742D 0.33 tolerated(0.22) possibly_damaging(0.524) TCGA-XF-A9ST-01 17 37371452 37371452 C G STAC2 Missense_Mutation p.E206D 0.29 deleterious(0.01) possibly_damaging(0.505) TCGA-XF-A9ST-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.51 deleterious(0) probably_damaging(0.994) TCGA-XF-A9ST-01 17 38297840 38297840 G A CASC3 Missense_Mutation p.E93K 0.14 deleterious(0.01) probably_damaging(0.931) TCGA-XF-A9ST-01 17 38420808 38420808 T A WIPF2 Missense_Mutation p.V127E 0.18 deleterious_low_confidence(0.03) benign(0.157) TCGA-XF-A9ST-01 17 40024967 40024967 A C ACLY Missense_Mutation p.F1069C 0.13 deleterious(0) possibly_damaging(0.882) TCGA-XF-A9ST-01 17 40278786 40278786 G C RAB5C Missense_Mutation p.I207M 0.19 deleterious(0.05) benign(0.304) TCGA-XF-A9ST-01 17 40840568 40840568 G C CNTNAP1 Silent p.G465G 0.42 TCGA-XF-A9ST-01 17 40847788 40847788 G T CNTNAP1 Missense_Mutation p.G1081V 0.16 tolerated(0.12) benign(0.306) TCGA-XF-A9ST-01 17 40996883 40996883 G T AOC2 Silent p.V80V 0.47 TCGA-XF-A9ST-01 17 43315963 43315963 G A FMNL1 Silent p.L309L 0.23 TCGA-XF-A9ST-01 17 4644988 4644988 C G ZMYND15 Nonsense_Mutation p.S235* 0.90 TCGA-XF-A9ST-01 17 48270389 48270389 C G COL1A1 Missense_Mutation p.G596A 0.64 unknown(0) TCGA-XF-A9ST-01 17 48274387 48274387 C G COL1A1 Missense_Mutation p.G263A 0.42 unknown(0) TCGA-XF-A9ST-01 17 57679910 57679910 G A DHX40 Missense_Mutation p.E612K 0.23 tolerated(0.89) benign(0.118) TCGA-XF-A9ST-01 17 57955602 57955602 T C TUBD1 Missense_Mutation p.K211E 0.23 tolerated(0.1) benign(0.271) TCGA-XF-A9ST-01 17 58147083 58147083 G T HEATR6 Silent p.R310R 0.26 TCGA-XF-A9ST-01 17 58740365 58740365 G C PPM1D Missense_Mutation p.E424Q 0.29 tolerated(0.08) benign(0.432) TCGA-XF-A9ST-01 17 62022370 62022370 C G SCN4A Silent p.R1257R 0.35 TCGA-XF-A9ST-01 17 62857079 62857079 G A LRRC37A3 Missense_Mutation p.S1062F 0.21 deleterious(0) probably_damaging(0.985) TCGA-XF-A9ST-01 17 63010911 63010911 T C GNA13 Missense_Mutation p.R200G 0.14 deleterious(0) probably_damaging(0.914) TCGA-XF-A9ST-01 17 65014329 65014329 G A CACNG4 Missense_Mutation p.R82Q 0.26 tolerated(0.71) benign(0.007) TCGA-XF-A9ST-01 17 65026770 65026770 G C CACNG4 Missense_Mutation p.E212Q 0.15 tolerated(0.5) benign(0.049) TCGA-XF-A9ST-01 17 7211825 7211825 C T EIF5A Intron 0.33 TCGA-XF-A9ST-01 17 72363772 72363772 A T GPR142 Missense_Mutation p.Q43L 0.32 deleterious_low_confidence(0) benign(0.403) TCGA-XF-A9ST-01 17 73727012 73727012 C G ITGB4 Silent p.S353S 0.13 TCGA-XF-A9ST-01 17 73774771 73774771 C - H3F3B Frame_Shift_Del p.E106Kfs*33 0.32 TCGA-XF-A9ST-01 17 74719908 74719908 C G JMJD6 Missense_Mutation p.E251Q 0.11 tolerated(0.16) benign(0.022) TCGA-XF-A9ST-01 17 7578253 7578253 C A TP53 Missense_Mutation p.G199V 0.96 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 17 79826716 79826716 C A ARHGDIA 3'UTR 0.33 TCGA-XF-A9ST-01 17 79847127 79847127 C G ALYREF Missense_Mutation p.D157H 0.22 tolerated(0.37) benign(0.021) TCGA-XF-A9ST-01 17 8020166 8020166 C T ALOXE3 Missense_Mutation p.G226S 0.95 deleterious(0) possibly_damaging(0.71) TCGA-XF-A9ST-01 17 8159879 8159879 G A PFAS Missense_Mutation p.E287K 0.94 tolerated(0.88) benign(0.005) TCGA-XF-A9ST-01 18 12014353 12014353 C T IMPA2 Silent p.L157L 0.59 TCGA-XF-A9ST-01 18 13095527 13095527 G C CEP192 Missense_Mutation p.G2094R 0.18 tolerated(0.31) possibly_damaging(0.809) TCGA-XF-A9ST-01 18 21118559 21118559 C T NPC1 Missense_Mutation p.M996I 0.39 tolerated(0.19) benign(0.027) TCGA-XF-A9ST-01 18 28993509 28993509 C A DSG4 Missense_Mutation p.S1044Y 0.21 deleterious(0) possibly_damaging(0.878) TCGA-XF-A9ST-01 18 29693775 29693775 C G RNF138 Missense_Mutation p.S115C 0.33 deleterious(0.01) possibly_damaging(0.907) TCGA-XF-A9ST-01 18 346754 346754 G T COLEC12 Missense_Mutation p.L290I 0.41 deleterious(0.03) possibly_damaging(0.899) TCGA-XF-A9ST-01 18 43467787 43467787 C G EPG5 Missense_Mutation p.V1680L 0.16 tolerated(0.09) probably_damaging(0.94) TCGA-XF-A9ST-01 18 43795964 43795964 C T C18orf25 Nonsense_Mutation p.Q40* 0.77 TCGA-XF-A9ST-01 18 47800672 47800672 A T MBD1 Missense_Mutation p.C344S 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9ST-01 18 50705344 50705344 G T DCC Missense_Mutation p.L477F 0.16 tolerated(0.08) benign(0.173) TCGA-XF-A9ST-01 18 57026406 57026406 A C LMAN1 Missense_Mutation p.L24R 0.24 tolerated(0.09) benign(0.002) TCGA-XF-A9ST-01 18 57570101 57570101 C T PMAIP1 3'UTR 0.27 TCGA-XF-A9ST-01 18 59854864 59854864 C G KIAA1468 Silent p.G42G 0.13 TCGA-XF-A9ST-01 18 64172332 64172332 C T CDH19 Missense_Mutation p.R679K 0.59 tolerated(0.75) benign(0.183) TCGA-XF-A9ST-01 18 9513036 9513036 G A RALBP1 5'UTR 0.09 TCGA-XF-A9ST-01 19 10568572 10568572 G T PDE4A Nonsense_Mutation p.E299* 0.25 TCGA-XF-A9ST-01 19 11569274 11569274 T A ELAVL3 Silent p.T162T 0.27 TCGA-XF-A9ST-01 19 12817070 12817070 G A TNPO2 Silent p.L536L 0.38 TCGA-XF-A9ST-01 19 12984212 12984212 C G MAST1 Missense_Mutation p.S1113W 0.25 deleterious(0) benign(0.003) TCGA-XF-A9ST-01 19 13885491 13885491 G T C19orf53 Silent p.A41A 0.43 TCGA-XF-A9ST-01 19 13941249 13941249 C T ZSWIM4 Silent p.F785F 0.20 TCGA-XF-A9ST-01 19 15053168 15053168 A C OR7C2 Missense_Mutation p.S290R 0.32 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-XF-A9ST-01 19 17441040 17441040 C T ANO8 Silent p.K389K 0.73 TCGA-XF-A9ST-01 19 2202735 2202735 G T DOT1L Missense_Mutation p.E248D 0.43 tolerated(0.06) possibly_damaging(0.81) TCGA-XF-A9ST-01 19 23545504 23545504 C T ZNF91 Missense_Mutation p.D93N 0.10 tolerated(0.07) benign(0.008) TCGA-XF-A9ST-01 19 3179476 3179476 T C S1PR4 Missense_Mutation p.L229P 0.48 deleterious(0) possibly_damaging(0.819) TCGA-XF-A9ST-01 19 32843954 32843954 C G ZNF507 Nonsense_Mutation p.S73* 0.60 TCGA-XF-A9ST-01 19 33700256 33700256 C G SLC7A10 Missense_Mutation p.V467L 0.25 deleterious(0.01) possibly_damaging(0.633) TCGA-XF-A9ST-01 19 36159435 36159435 C G UPK1A Nonsense_Mutation p.S55* 0.18 TCGA-XF-A9ST-01 19 36221702 36221702 G C KMT2B Missense_Mutation p.E1791Q 0.13 probably_damaging(0.932) TCGA-XF-A9ST-01 19 36430342 36430342 G T LRFN3 Silent p.P5P 0.54 TCGA-XF-A9ST-01 19 38190535 38190535 C G ZNF607 Missense_Mutation p.R166P 0.23 deleterious(0) possibly_damaging(0.677) TCGA-XF-A9ST-01 19 4177122 4177122 C G SIRT6 Missense_Mutation p.E131Q 0.50 deleterious(0.01) probably_damaging(0.978) TCGA-XF-A9ST-01 19 43268359 43268359 C G PSG8 Missense_Mutation p.E47Q 0.17 deleterious(0.03) possibly_damaging(0.669) TCGA-XF-A9ST-01 19 43698638 43698638 C T PSG4 Nonsense_Mutation p.W366* 0.28 TCGA-XF-A9ST-01 19 44418666 44418666 C G ZNF45 Missense_Mutation p.E308Q 0.14 tolerated(0.13) probably_damaging(0.995) TCGA-XF-A9ST-01 19 45815176 45815176 G C CKM Missense_Mutation p.L162V 0.29 deleterious(0.01) possibly_damaging(0.487) TCGA-XF-A9ST-01 19 45867571 45867571 G A ERCC2 Missense_Mutation p.S246F 0.45 deleterious(0) probably_damaging(0.948) TCGA-XF-A9ST-01 19 46890381 46890381 C G PPP5C Missense_Mutation p.I312M 0.15 tolerated(1) benign(0.01) TCGA-XF-A9ST-01 19 49131994 49131994 G A SPHK2 Missense_Mutation p.R310Q 0.16 tolerated(0.07) benign(0.137) TCGA-XF-A9ST-01 19 49519398 49519398 G C LHB Missense_Mutation p.S118C 0.16 deleterious(0) probably_damaging(0.964) TCGA-XF-A9ST-01 19 49552107 49552107 C T CGB8 5'UTR 0.55 TCGA-XF-A9ST-01 19 5111916 5111916 C T KDM4B Intron 0.31 TCGA-XF-A9ST-01 19 51875193 51875193 C T NKG7 Splice_Site p.X147_splice 0.53 TCGA-XF-A9ST-01 19 53303202 53303202 C T ZNF28 Silent p.E632E 0.21 TCGA-XF-A9ST-01 19 55451532 55451532 C T NLRP7 Missense_Mutation p.G219S 0.57 tolerated(0.12) possibly_damaging(0.549) TCGA-XF-A9ST-01 19 55812927 55812927 G C BRSK1 Missense_Mutation p.K242N 0.79 deleterious(0) possibly_damaging(0.758) TCGA-XF-A9ST-01 19 56160660 56160660 C T CCDC106 Missense_Mutation p.R41W 0.26 deleterious(0.01) possibly_damaging(0.629) TCGA-XF-A9ST-01 19 56172438 56172438 C T U2AF2 Silent p.P123P 0.27 TCGA-XF-A9ST-01 19 58064130 58064130 G T ZNF550 Intron 0.50 TCGA-XF-A9ST-01 19 58231969 58231969 G C ZNF671 Missense_Mutation p.I495M 0.19 tolerated(0.3) possibly_damaging(0.588) TCGA-XF-A9ST-01 19 6177350 6177350 C G ACSBG2 Missense_Mutation p.I283M 0.19 tolerated(0.15) benign(0.22) TCGA-XF-A9ST-01 19 6467649 6467649 C G DENND1C Missense_Mutation p.E758Q 0.56 tolerated_low_confidence(0.52) benign(0.006) TCGA-XF-A9ST-01 19 6468320 6468320 C T DENND1C Silent p.K572K 0.58 TCGA-XF-A9ST-01 19 8201105 8201105 G A FBN3 Silent p.F478F 0.28 TCGA-XF-A9ST-01 19 8564610 8564610 C G PRAM1 Missense_Mutation p.E28Q 0.23 tolerated(0.05) possibly_damaging(0.895) TCGA-XF-A9ST-01 19 8662115 8662115 C T ADAMTS10 Intron 0.48 TCGA-XF-A9ST-01 1 100154462 100154462 T C PALMD Missense_Mutation p.S216P 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 1 100214168 100214168 C G FRRS1 Missense_Mutation p.V53L 0.16 tolerated(0.08) benign(0.179) TCGA-XF-A9ST-01 1 101198219 101198219 G T VCAM1 Nonsense_Mutation p.E591* 0.48 TCGA-XF-A9ST-01 1 11078795 11078795 G A TARDBP Silent p.K136K 0.68 TCGA-XF-A9ST-01 1 114940585 114940585 C G TRIM33 Missense_Mutation p.D1050H 0.14 deleterious(0.02) benign(0.382) TCGA-XF-A9ST-01 1 115261316 115261316 C G CSDE1 Missense_Mutation p.R802P 0.11 deleterious(0) probably_damaging(0.993) TCGA-XF-A9ST-01 1 117150565 117150565 G T IGSF3 Silent p.L407L 0.16 TCGA-XF-A9ST-01 1 118165524 118165524 A G FAM46C Missense_Mutation p.M12V 0.13 tolerated(0.54) benign(0) TCGA-XF-A9ST-01 1 1267961 1267961 C G TAS1R3 Missense_Mutation p.F350L 0.16 deleterious(0.01) possibly_damaging(0.755) TCGA-XF-A9ST-01 1 12853451 12853451 C A PRAMEF1 Silent p.I25I 0.53 TCGA-XF-A9ST-01 1 1293864 1293864 G C MXRA8 Missense_Mutation p.I7M 0.17 deleterious(0.01) benign(0.293) TCGA-XF-A9ST-01 1 144931522 144931522 G C PDE4DIP Intron 0.31 TCGA-XF-A9ST-01 1 145416912 145416912 T C HFE2 Silent p.F419F 0.25 TCGA-XF-A9ST-01 1 149900748 149900748 G A MTMR11 3'UTR 0.22 TCGA-XF-A9ST-01 1 150128298 150128298 G C PLEKHO1 Silent p.L72L 0.14 TCGA-XF-A9ST-01 1 151748297 151748297 T G TDRKH Silent p.S427S 0.15 TCGA-XF-A9ST-01 1 153924503 153924503 C G CRTC2 Missense_Mutation p.D330H 0.17 tolerated(0.14) benign(0.306) TCGA-XF-A9ST-01 1 154956408 154956408 G C FLAD1 Missense_Mutation p.G80R 0.18 tolerated_low_confidence(0.47) benign(0) TCGA-XF-A9ST-01 1 156096689 156096689 G A LMNA Intron 0.50 TCGA-XF-A9ST-01 1 156641266 156641266 G C NES Missense_Mutation p.S905C 0.19 deleterious(0.03) possibly_damaging(0.759) TCGA-XF-A9ST-01 1 156813228 156813228 C T INSRR Missense_Mutation p.A963T 0.68 tolerated(0.27) benign(0.006) TCGA-XF-A9ST-01 1 15736623 15736623 C T EFHD2 Silent p.D52D 0.60 TCGA-XF-A9ST-01 1 157667532 157667532 C A FCRL3 Missense_Mutation p.S159I 0.06 deleterious(0) probably_damaging(0.934) TCGA-XF-A9ST-01 1 158151876 158151876 C T CD1D Missense_Mutation p.S128L 0.15 tolerated(0.42) benign(0.031) TCGA-XF-A9ST-01 1 158325934 158325934 A G CD1E Intron 0.24 TCGA-XF-A9ST-01 1 158609473 158609473 C T SPTA1 Missense_Mutation p.E1627K 0.20 deleterious(0.01) probably_damaging(0.942) TCGA-XF-A9ST-01 1 158984609 158984609 C T IFI16 Nonsense_Mutation p.Q47* 0.15 TCGA-XF-A9ST-01 1 160104276 160104276 G A ATP1A2 Silent p.V610V 0.26 TCGA-XF-A9ST-01 1 160163587 160163587 G A CASQ1 Missense_Mutation p.E139K 0.16 deleterious(0) probably_damaging(0.941) TCGA-XF-A9ST-01 1 169519039 169519039 C G F5 Missense_Mutation p.Q537H 0.12 deleterious(0) probably_damaging(0.994) TCGA-XF-A9ST-01 1 169565198 169565198 G A SELP Missense_Mutation p.S689L 0.18 tolerated(0.37) benign(0.017) TCGA-XF-A9ST-01 1 170959073 170959073 C G MROH9 Missense_Mutation p.I319M 0.43 deleterious(0) probably_damaging(0.952) TCGA-XF-A9ST-01 1 171079942 171079942 A T FMO3 Missense_Mutation p.M211L 0.49 tolerated(0.07) benign(0.001) TCGA-XF-A9ST-01 1 17586161 17586161 G T PADI3 Nonsense_Mutation p.E61* 0.32 TCGA-XF-A9ST-01 1 179012971 179012971 A G FAM20B 5'UTR 0.81 TCGA-XF-A9ST-01 1 183105535 183105535 G C LAMC1 Missense_Mutation p.V1377L 0.43 tolerated(0.45) probably_damaging(0.969) TCGA-XF-A9ST-01 1 185125831 185125831 G C TRMT1L Missense_Mutation p.A5G 0.26 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-XF-A9ST-01 1 186946901 186946901 C G PLA2G4A Missense_Mutation p.F647L 0.91 deleterious(0) probably_damaging(0.988) TCGA-XF-A9ST-01 1 192127869 192127869 C G RGS18 Missense_Mutation p.S34R 0.21 tolerated(0.25) benign(0.007) TCGA-XF-A9ST-01 1 20005562 20005562 C G HTR6 Missense_Mutation p.R342G 0.20 tolerated(0.54) benign(0) TCGA-XF-A9ST-01 1 201869728 201869728 C G LMOD1 Missense_Mutation p.R138T 0.23 benign(0.07) TCGA-XF-A9ST-01 1 201974907 201974907 C T RNPEP 3'UTR 0.18 TCGA-XF-A9ST-01 1 206634596 206634596 G T SRGAP2 Missense_Mutation p.G930V 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.617) TCGA-XF-A9ST-01 1 207307813 207307813 T G C4BPA Silent p.P383P 0.94 TCGA-XF-A9ST-01 1 213046048 213046048 A G FLVCR1 Silent p.P304P 0.09 TCGA-XF-A9ST-01 1 213046052 213046052 C G FLVCR1 Missense_Mutation p.Q306E 0.10 tolerated(0.1) benign(0.005) TCGA-XF-A9ST-01 1 220970027 220970027 C T MARC1 Silent p.A164A 0.15 TCGA-XF-A9ST-01 1 223983917 223983917 G C TP53BP2 Nonsense_Mutation p.S775* 0.93 TCGA-XF-A9ST-01 1 22416571 22416571 C T CDC42 Intron 0.22 TCGA-XF-A9ST-01 1 224377867 224377867 C A DEGS1 Missense_Mutation p.P224Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 1 224377888 224377888 C T DEGS1 Missense_Mutation p.A231V 0.17 deleterious(0) possibly_damaging(0.58) TCGA-XF-A9ST-01 1 232596693 232596693 C T SIPA1L2 Missense_Mutation p.R1012H 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 1 23377003 23377003 G C KDM1A Missense_Mutation p.R234T 0.36 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 1 24409018 24409018 C G MYOM3 Intron 0.50 TCGA-XF-A9ST-01 1 24411103 24411103 G A MYOM3 Nonsense_Mutation p.Q609* 0.31 TCGA-XF-A9ST-01 1 245019457 245019457 T A HNRNPU Missense_Mutation p.N639I 0.27 tolerated(0.16) unknown(0) TCGA-XF-A9ST-01 1 246727686 246727686 C T TFB2M Missense_Mutation p.A122T 0.88 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 1 247464500 247464500 T G ZNF496 Missense_Mutation p.D362A 0.15 tolerated(0.09) possibly_damaging(0.821) TCGA-XF-A9ST-01 1 248845527 248845527 C T OR14I1 Missense_Mutation p.G27R 1.00 deleterious(0.02) benign(0.045) TCGA-XF-A9ST-01 1 25785013 25785013 G T TMEM57 Missense_Mutation p.D262Y 0.31 deleterious(0.01) possibly_damaging(0.671) TCGA-XF-A9ST-01 1 26898056 26898056 G T RPS6KA1 Silent p.G578G 0.52 TCGA-XF-A9ST-01 1 28314997 28314997 G C EYA3 Intron 0.33 TCGA-XF-A9ST-01 1 35563067 35563067 G C ZMYM1 Missense_Mutation p.G107R 0.24 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-XF-A9ST-01 1 37267619 37267619 C T GRIK3 Missense_Mutation p.E865K 0.22 deleterious(0.03) benign(0.029) TCGA-XF-A9ST-01 1 3753978 3753978 C G CEP104 Missense_Mutation p.E333Q 0.33 tolerated(0.23) benign(0.127) TCGA-XF-A9ST-01 1 41012779 41012779 G T ZNF684 Missense_Mutation p.V262L 0.20 tolerated(0.55) benign(0.003) TCGA-XF-A9ST-01 1 41512242 41512242 G A SCMH1 Silent p.L435L 0.73 TCGA-XF-A9ST-01 1 43783296 43783296 G T TIE1 Missense_Mutation p.L894F 0.72 deleterious(0) probably_damaging(0.966) TCGA-XF-A9ST-01 1 43828720 43828720 G C CDC20 Missense_Mutation p.E474Q 0.25 tolerated(0.42) benign(0.017) TCGA-XF-A9ST-01 1 45266577 45266577 C T PLK3 Silent p.V92V 0.56 TCGA-XF-A9ST-01 1 52227592 52227592 C T OSBPL9 Missense_Mutation p.P253S 0.22 tolerated(0.38) possibly_damaging(0.474) TCGA-XF-A9ST-01 1 52704513 52704513 C G ZFYVE9 Missense_Mutation p.S475C 0.68 deleterious_low_confidence(0.01) possibly_damaging(0.495) TCGA-XF-A9ST-01 1 52805814 52805814 G A ZFYVE9 Missense_Mutation p.D1284N 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-XF-A9ST-01 1 55075104 55075104 G T FAM151A Missense_Mutation p.S532Y 0.19 deleterious(0) probably_damaging(0.969) TCGA-XF-A9ST-01 1 56990055 56990055 G A PPAP2B Missense_Mutation p.H157Y 0.14 deleterious(0.05) benign(0.026) TCGA-XF-A9ST-01 1 6021918 6021918 A C NPHP4 Silent p.P203P 0.32 TCGA-XF-A9ST-01 1 62739716 62739716 C T KANK4 Missense_Mutation p.G354R 0.27 tolerated(0.4) benign(0.017) TCGA-XF-A9ST-01 1 67518664 67518664 G A SLC35D1 Missense_Mutation p.S71F 0.51 deleterious(0) probably_damaging(0.919) TCGA-XF-A9ST-01 1 72400883 72400883 C G NEGR1 Missense_Mutation p.L96F 0.19 tolerated(0.12) benign(0.325) TCGA-XF-A9ST-01 1 8415171 8415171 C T RERE Silent p.K1559K 0.62 TCGA-XF-A9ST-01 1 86590558 86590558 C G COL24A1 Silent p.L487L 0.18 TCGA-XF-A9ST-01 1 86590653 86590653 C A COL24A1 Missense_Mutation p.D456Y 0.29 deleterious(0.04) benign(0.009) TCGA-XF-A9ST-01 1 9129702 9129702 A T SLC2A5 5'UTR 0.31 TCGA-XF-A9ST-01 1 91742594 91742594 C G HFM1 Silent p.G1139G 0.17 TCGA-XF-A9ST-01 1 93622010 93622010 G A TMED5 Silent p.F106F 0.14 TCGA-XF-A9ST-01 1 94041603 94041603 G C BCAR3 Missense_Mutation p.H590Q 0.13 deleterious(0.02) possibly_damaging(0.451) TCGA-XF-A9ST-01 1 979070 979070 A G AGRN Missense_Mutation p.T586A 0.29 deleterious(0.03) possibly_damaging(0.523) TCGA-XF-A9ST-01 20 10637059 10637059 G A JAG1 Missense_Mutation p.P248S 0.38 deleterious(0.01) possibly_damaging(0.665) TCGA-XF-A9ST-01 20 18507016 18507016 G A SEC23B Splice_Site p.X279_splice 0.43 TCGA-XF-A9ST-01 20 20020351 20020351 T A CRNKL1 Missense_Mutation p.I644F 0.47 deleterious(0.02) benign(0.067) TCGA-XF-A9ST-01 20 31421603 31421603 G C MAPRE1 Missense_Mutation p.E68Q 0.22 deleterious(0.01) possibly_damaging(0.81) TCGA-XF-A9ST-01 20 31685564 31685564 C G BPIFB4 Missense_Mutation p.L514V 0.21 tolerated(1) benign(0.001) TCGA-XF-A9ST-01 20 32399400 32399400 C T CHMP4B Silent p.F42F 0.26 TCGA-XF-A9ST-01 20 3312960 3312960 A G C20orf194 Missense_Mutation p.Y344H 0.30 deleterious(0) probably_damaging(0.975) TCGA-XF-A9ST-01 20 44698968 44698968 C G NCOA5 Silent p.R82R 0.23 TCGA-XF-A9ST-01 20 47614730 47614730 G C ARFGEF2 Missense_Mutation p.R1074S 0.20 deleterious(0) possibly_damaging(0.54) TCGA-XF-A9ST-01 20 49209657 49209657 G A FAM65C Silent p.I759I 0.24 TCGA-XF-A9ST-01 20 51871036 51871036 C G TSHZ2 Missense_Mutation p.Q347E 0.21 deleterious(0.04) benign(0.043) TCGA-XF-A9ST-01 20 55906993 55906993 A - SPO11 Frame_Shift_Del p.N80Tfs*2 0.18 TCGA-XF-A9ST-01 20 61151574 61151574 A G C20orf166 Intron 0.94 TCGA-XF-A9ST-01 20 61537421 61537421 C G DIDO1 Missense_Mutation p.R469T 0.94 possibly_damaging(0.606) TCGA-XF-A9ST-01 20 62373395 62373395 C G SLC2A4RG Missense_Mutation p.L189V 0.15 tolerated(0.17) possibly_damaging(0.511) TCGA-XF-A9ST-01 21 28214876 28214876 A G ADAMTS1 Missense_Mutation p.S287P 0.19 deleterious(0) probably_damaging(0.996) TCGA-XF-A9ST-01 21 33331199 33331199 C T HUNK Missense_Mutation p.T264M 0.12 deleterious(0.01) probably_damaging(1) TCGA-XF-A9ST-01 21 34635353 34635353 G T IFNAR2 Nonsense_Mutation p.E366* 0.15 TCGA-XF-A9ST-01 21 34876554 34876554 T G GART Silent p.A970A 0.12 TCGA-XF-A9ST-01 21 36171742 36171755 GTTGGATCTGCCTT - RUNX1 Frame_Shift_Del p.R271Ifs*324 0.81 TCGA-XF-A9ST-01 21 37618818 37618818 G A DOPEY2 Missense_Mutation p.G1514S 0.17 tolerated(0.09) possibly_damaging(0.905) TCGA-XF-A9ST-01 21 37785421 37785421 C G CHAF1B Missense_Mutation p.P434R 0.19 deleterious(0.05) possibly_damaging(0.526) TCGA-XF-A9ST-01 21 40547587 40547587 T C PSMG1 Missense_Mutation p.I266V 0.15 tolerated(0.8) benign(0.002) TCGA-XF-A9ST-01 21 42629234 42629234 C T BACE2 Silent p.F428F 0.12 TCGA-XF-A9ST-01 21 42843904 42843904 G A TMPRSS2 Missense_Mutation p.L339F 0.10 tolerated(0.33) benign(0.403) TCGA-XF-A9ST-01 21 42860361 42860361 G T TMPRSS2 Silent p.G172G 0.11 TCGA-XF-A9ST-01 21 43767690 43767690 G C TFF2 Missense_Mutation p.P94R 0.09 deleterious(0.02) possibly_damaging(0.454) TCGA-XF-A9ST-01 21 46021208 46021208 C G KRTAP10-7 Missense_Mutation p.C229W 0.23 deleterious(0) unknown(0) TCGA-XF-A9ST-01 21 47836173 47836173 C T PCNT Missense_Mutation p.S2114F 0.77 possibly_damaging(0.831) TCGA-XF-A9ST-01 22 22280017 22280017 C T PPM1F Missense_Mutation p.E304K 0.16 deleterious(0.03) probably_damaging(0.973) TCGA-XF-A9ST-01 22 22664758 22664758 C T BMS1P20 RNA 0.15 TCGA-XF-A9ST-01 22 22892452 22892452 C G PRAME Missense_Mutation p.A217P 0.15 deleterious(0.03) possibly_damaging(0.786) TCGA-XF-A9ST-01 22 23980729 23980729 G A GUSBP11 RNA 0.28 TCGA-XF-A9ST-01 22 23980752 23980752 G C GUSBP11 RNA 0.28 TCGA-XF-A9ST-01 22 24108345 24108345 C G CHCHD10 Missense_Mutation p.E127Q 0.14 deleterious(0.02) probably_damaging(1) TCGA-XF-A9ST-01 22 26164501 26164501 C G MYO18B Silent p.T206T 0.30 TCGA-XF-A9ST-01 22 30660098 30660098 G A OSM Missense_Mutation p.P178L 0.33 tolerated(0.1) probably_damaging(0.992) TCGA-XF-A9ST-01 22 36587753 36587753 G A APOL4 Silent p.I141I 0.10 TCGA-XF-A9ST-01 22 36662037 36662037 C T APOL1 Silent p.L401L 0.17 TCGA-XF-A9ST-01 22 38165073 38165073 T A TRIOBP Missense_Mutation p.L2205Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 22 38864158 38864158 G C KDELR3 5'UTR 0.30 TCGA-XF-A9ST-01 22 40139944 40139944 C G ENTHD1 Missense_Mutation p.D522H 0.15 deleterious(0) possibly_damaging(0.838) TCGA-XF-A9ST-01 22 40574004 40574004 G C TNRC6B 5'UTR 0.50 TCGA-XF-A9ST-01 22 41077836 41077836 G C MCHR1 Missense_Mutation p.L391F 0.29 tolerated(0.16) benign(0.008) TCGA-XF-A9ST-01 22 41657461 41657461 C G RANGAP1 Missense_Mutation p.E202Q 0.22 tolerated(0.45) benign(0.067) TCGA-XF-A9ST-01 22 42466307 42466307 T A NAGA 5'UTR 0.27 TCGA-XF-A9ST-01 22 43604208 43604208 G C SCUBE1 Silent p.T868T 0.34 TCGA-XF-A9ST-01 22 50217030 50217030 G A BRD1 Silent p.I312I 0.25 TCGA-XF-A9ST-01 22 50705835 50705835 G C MAPK11 Missense_Mutation p.Q128E 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-XF-A9ST-01 2 103281672 103281672 C A SLC9A2 Silent p.G289G 0.22 TCGA-XF-A9ST-01 2 107459765 107459779 CTTCTGCAGGCGCGG - ST6GAL2 In_Frame_Del p.P219_K223del 0.86 TCGA-XF-A9ST-01 2 122485320 122485320 G T NIFK Silent p.R288R 0.90 TCGA-XF-A9ST-01 2 128029015 128029015 C T ERCC3 Silent p.S614S 0.22 TCGA-XF-A9ST-01 2 152659779 152659779 G A ARL5A 3'UTR 0.17 TCGA-XF-A9ST-01 2 170462570 170462570 C T PPIG Missense_Mutation p.S53L 0.87 tolerated(0.2) benign(0.174) TCGA-XF-A9ST-01 2 174224026 174224026 T C CDCA7 Missense_Mutation p.V64A 0.96 deleterious(0.04) benign(0.028) TCGA-XF-A9ST-01 2 174777934 174777934 G C SP3 Silent p.V631V 0.91 TCGA-XF-A9ST-01 2 179417760 179417760 G C TTN Missense_Mutation p.P29956R 0.88 TCGA-XF-A9ST-01 2 179702423 179702423 C G CCDC141 Missense_Mutation p.E1175Q 0.89 deleterious(0.04) benign(0.004) TCGA-XF-A9ST-01 2 185731105 185731105 G A ZNF804A Missense_Mutation p.E41K 0.50 deleterious(0.01) benign(0.069) TCGA-XF-A9ST-01 2 197171300 197171300 G A HECW2 Missense_Mutation p.S909F 0.32 deleterious(0) probably_damaging(0.931) TCGA-XF-A9ST-01 2 202725513 202725513 T C CDK15 Intron 0.94 TCGA-XF-A9ST-01 2 216279617 216279617 G A FN1 Silent p.I628I 0.92 TCGA-XF-A9ST-01 2 216964790 216964790 G - TMEM169 Frame_Shift_Del p.E141Kfs*25 0.44 TCGA-XF-A9ST-01 2 219487481 219487481 G A PLCD4 Missense_Mutation p.D218N 0.87 tolerated(0.24) probably_damaging(1) TCGA-XF-A9ST-01 2 219555186 219555186 C G STK36 Missense_Mutation p.Q558E 1.00 tolerated(0.17) benign(0.005) TCGA-XF-A9ST-01 2 219555247 219555247 C G STK36 Missense_Mutation p.S578C 0.93 deleterious(0.02) possibly_damaging(0.469) TCGA-XF-A9ST-01 2 219557993 219557993 G T STK36 Nonsense_Mutation p.E692* 0.84 TCGA-XF-A9ST-01 2 220047172 220047172 G C FAM134A Missense_Mutation p.E485Q 0.24 tolerated(0.17) possibly_damaging(0.502) TCGA-XF-A9ST-01 2 220073014 220073014 T G ZFAND2B Silent p.S157S 0.16 TCGA-XF-A9ST-01 2 225751229 225751229 T C DOCK10 Missense_Mutation p.K146E 0.90 tolerated(0.08) benign(0.396) TCGA-XF-A9ST-01 2 231655632 231655632 C G CAB39 Missense_Mutation p.L54V 1.00 deleterious(0.03) possibly_damaging(0.506) TCGA-XF-A9ST-01 2 242092900 242092900 G A PPP1R7 Missense_Mutation p.R21Q 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-XF-A9ST-01 2 242814921 242814921 T A CXXC11 Missense_Mutation p.L405Q 0.59 tolerated(0.18) benign(0.432) TCGA-XF-A9ST-01 2 25383959 25383959 C A POMC Missense_Mutation p.K265N 0.12 deleterious(0.03) probably_damaging(1) TCGA-XF-A9ST-01 2 27602985 27602985 G A ZNF513 Silent p.L62L 0.92 TCGA-XF-A9ST-01 2 27607623 27607636 GCTTGTCAGAGGCT - PPM1G Frame_Shift_Del p.D246Sfs*3 0.73 TCGA-XF-A9ST-01 2 55254622 55254622 C T RTN4 Splice_Site p.X205_splice 0.67 TCGA-XF-A9ST-01 2 68692015 68692015 C G FBXO48 Missense_Mutation p.R88P 0.21 tolerated(0.11) benign(0) TCGA-XF-A9ST-01 2 68805035 68805035 G A APLF Missense_Mutation p.E473K 0.76 deleterious(0.04) probably_damaging(0.929) TCGA-XF-A9ST-01 2 79385844 79385844 C A REG3A Missense_Mutation p.G43V 0.94 deleterious(0.02) probably_damaging(0.946) TCGA-XF-A9ST-01 2 85276691 85276691 A G KCMF1 Silent p.T268T 0.96 TCGA-XF-A9ST-01 2 85662567 85662567 C T SH2D6 Missense_Mutation p.S67L 0.87 tolerated(0.05) possibly_damaging(0.754) TCGA-XF-A9ST-01 2 8890306 8890306 G A KIDINS220 Missense_Mutation p.S1117L 0.96 deleterious(0.02) benign(0.434) TCGA-XF-A9ST-01 2 9514926 9514926 G C ASAP2 Missense_Mutation p.R533S 0.10 deleterious(0.01) benign(0.246) TCGA-XF-A9ST-01 2 95719193 95719193 C T MAL Missense_Mutation p.S152F 0.17 deleterious(0) possibly_damaging(0.77) TCGA-XF-A9ST-01 2 96993522 96993522 G A ITPRIPL1 Missense_Mutation p.D393N 0.98 tolerated(0.38) benign(0.003) TCGA-XF-A9ST-01 3 100471701 100471701 A C ABI3BP Nonsense_Mutation p.Y973* 0.18 TCGA-XF-A9ST-01 3 100976414 100976414 G C IMPG2 Missense_Mutation p.S371C 0.17 deleterious(0.01) possibly_damaging(0.868) TCGA-XF-A9ST-01 3 110830932 110830932 G C PVRL3 Missense_Mutation p.K72N 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9ST-01 3 121212446 121212446 A C POLQ Missense_Mutation p.L801V 0.34 deleterious(0) possibly_damaging(0.571) TCGA-XF-A9ST-01 3 122288121 122288121 G C DTX3L Missense_Mutation p.E395D 0.38 tolerated(0.06) benign(0.144) TCGA-XF-A9ST-01 3 122667462 122667462 G T SEMA5B Missense_Mutation p.S127R 0.12 tolerated_low_confidence(0.07) possibly_damaging(0.883) TCGA-XF-A9ST-01 3 122864377 122864377 C T PDIA5 Missense_Mutation p.H307Y 0.49 deleterious(0) probably_damaging(0.995) TCGA-XF-A9ST-01 3 124692599 124692599 G A HEG1 Silent p.L1324L 0.11 TCGA-XF-A9ST-01 3 130188097 130188097 G A COL6A5 Missense_Mutation p.E2417K 0.66 tolerated(0.17) benign(0.226) TCGA-XF-A9ST-01 3 130380797 130380797 C T COL6A6 Silent p.H2049H 0.61 TCGA-XF-A9ST-01 3 132213934 132213934 A G DNAJC13 Missense_Mutation p.H1315R 0.66 tolerated(0.16) benign(0.189) TCGA-XF-A9ST-01 3 133878181 133878181 G A RYK Silent p.L539L 0.30 TCGA-XF-A9ST-01 3 13393427 13393427 G C NUP210 Silent p.T929T 0.89 TCGA-XF-A9ST-01 3 13659600 13659600 G C FBLN2 Missense_Mutation p.R585P 0.20 deleterious(0.02) possibly_damaging(0.872) TCGA-XF-A9ST-01 3 137892377 137892377 C T DBR1 Missense_Mutation p.G97S 0.21 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 3 138289904 138289904 C T CEP70 Missense_Mutation p.E86K 0.14 tolerated(0.07) possibly_damaging(0.547) TCGA-XF-A9ST-01 3 141688984 141688984 C T TFDP2 Splice_Site p.X222_splice 0.24 TCGA-XF-A9ST-01 3 142259805 142259805 C A ATR Missense_Mutation p.M1174I 0.22 tolerated(0.21) possibly_damaging(0.874) TCGA-XF-A9ST-01 3 147128288 147128288 G A ZIC1 Missense_Mutation p.G130D 0.17 tolerated(0.14) possibly_damaging(0.901) TCGA-XF-A9ST-01 3 148891460 148891460 T C CP 3'UTR 0.15 TCGA-XF-A9ST-01 3 157160219 157160219 G A PTX3 Silent p.V199V 0.75 TCGA-XF-A9ST-01 3 157160668 157160668 G A PTX3 Missense_Mutation p.R349K 0.79 tolerated(0.63) benign(0.02) TCGA-XF-A9ST-01 3 165547568 165547568 A C BCHE Silent p.G418G 0.09 TCGA-XF-A9ST-01 3 183368103 183368103 A G KLHL24 5'UTR 0.79 TCGA-XF-A9ST-01 3 185644425 185644425 C T TRA2B Missense_Mutation p.R45H 0.15 tolerated_low_confidence(0.66) unknown(0) TCGA-XF-A9ST-01 3 36527675 36527675 C T STAC Silent p.T207T 0.12 TCGA-XF-A9ST-01 3 36873849 36873849 G T TRANK1 Missense_Mutation p.L2365I 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-XF-A9ST-01 3 38401827 38401827 C T XYLB Intron 0.23 TCGA-XF-A9ST-01 3 39108315 39108315 T C WDR48 Missense_Mutation p.W144R 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A9ST-01 3 40529641 40529641 C T ZNF619 Missense_Mutation p.S587L 0.14 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-XF-A9ST-01 3 44872468 44872468 G C KIF15 Silent p.L1043L 0.28 TCGA-XF-A9ST-01 3 45779283 45779283 T C SACM1L Silent p.N443N 0.95 TCGA-XF-A9ST-01 3 47058594 47058594 C T SETD2 Missense_Mutation p.E2562K 0.30 deleterious(0) possibly_damaging(0.524) TCGA-XF-A9ST-01 3 47163992 47163992 T C SETD2 Missense_Mutation p.K712E 0.27 deleterious_low_confidence(0.05) benign(0.006) TCGA-XF-A9ST-01 3 49152740 49152740 C T USP19 Missense_Mutation p.R646H 0.19 tolerated(0.09) possibly_damaging(0.557) TCGA-XF-A9ST-01 3 49847283 49847300 GAAGAGTTCTTCAAACTC - UBA7 In_Frame_Del p.E618_F623del 0.29 TCGA-XF-A9ST-01 3 5212250 5212250 A T ARL8B Missense_Mutation p.K62N 0.17 deleterious(0.02) possibly_damaging(0.578) TCGA-XF-A9ST-01 3 53213615 53213615 G A PRKCD Silent p.Q46Q 0.90 TCGA-XF-A9ST-01 3 58139224 58139224 G A FLNB Missense_Mutation p.V2195M 0.09 tolerated(0.05) probably_damaging(0.913) TCGA-XF-A9ST-01 3 64547317 64547317 C A ADAMTS9 Silent p.S1545S 0.46 TCGA-XF-A9ST-01 3 73433676 73433676 C A PDZRN3 Missense_Mutation p.V681L 0.35 tolerated(0.22) possibly_damaging(0.869) TCGA-XF-A9ST-01 4 100867741 100867741 C G DNAJB14 5'UTR 0.33 TCGA-XF-A9ST-01 4 104102526 104102526 C A CENPE Nonsense_Mutation p.E351* 0.20 TCGA-XF-A9ST-01 4 110791056 110791056 C T LRIT3 Missense_Mutation p.S384L 0.31 tolerated(0.33) benign(0) TCGA-XF-A9ST-01 4 110791805 110791805 C T LRIT3 Missense_Mutation p.P634S 0.28 deleterious(0.05) probably_damaging(0.982) TCGA-XF-A9ST-01 4 120241954 120241954 C A FABP2 Missense_Mutation p.L37F 0.13 tolerated(0.14) probably_damaging(0.991) TCGA-XF-A9ST-01 4 134073400 134073400 C T PCDH10 Missense_Mutation p.P702L 0.08 tolerated(0.1) benign(0.114) TCGA-XF-A9ST-01 4 134073497 134073497 C T PCDH10 Silent p.I734I 0.21 TCGA-XF-A9ST-01 4 153273902 153273902 G A FBXW7 Intron 0.17 TCGA-XF-A9ST-01 4 154553936 154553936 C G KIAA0922 Missense_Mutation p.T1425S 0.37 tolerated(0.63) benign(0.002) TCGA-XF-A9ST-01 4 16760787 16760787 G A LDB2 Nonsense_Mutation p.R77* 0.91 TCGA-XF-A9ST-01 4 174448337 174448337 A C HAND2 3'UTR 0.33 TCGA-XF-A9ST-01 4 17488844 17488844 C G QDPR Missense_Mutation p.W215C 0.81 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 4 178352918 178352918 T C AGA Missense_Mutation p.M329V 0.45 tolerated(0.45) benign(0.093) TCGA-XF-A9ST-01 4 44724165 44724165 G A GNPDA2 Silent p.I20I 0.35 TCGA-XF-A9ST-01 4 46930501 46930501 G A GABRA4 Missense_Mutation p.S469L 0.22 tolerated_low_confidence(0.09) benign(0.054) TCGA-XF-A9ST-01 4 55980420 55980420 T A KDR Missense_Mutation p.Y224F 0.30 deleterious(0.02) probably_damaging(0.933) TCGA-XF-A9ST-01 4 69682209 69682209 C G UGT2B10 Missense_Mutation p.L158V 0.22 deleterious(0) probably_damaging(0.912) TCGA-XF-A9ST-01 4 71063824 71063824 G A ODAM Missense_Mutation p.D109N 0.31 tolerated(0.05) possibly_damaging(0.908) TCGA-XF-A9ST-01 4 71630291 71630291 C G RUFY3 Silent p.L190L 0.18 TCGA-XF-A9ST-01 4 77003661 77003661 A G ART3 Missense_Mutation p.S252G 0.18 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 4 81188090 81188090 G T FGF5 Missense_Mutation p.D38Y 0.23 tolerated_low_confidence(0.07) benign(0.188) TCGA-XF-A9ST-01 4 82366763 82366763 C T RASGEF1B Missense_Mutation p.R282Q 0.30 deleterious(0) probably_damaging(0.987) TCGA-XF-A9ST-01 4 83411378 83411378 T C TMEM150C Missense_Mutation p.E126G 0.21 tolerated(0.34) possibly_damaging(0.682) TCGA-XF-A9ST-01 4 87028625 87028625 C T MAPK10 Intron 0.44 TCGA-XF-A9ST-01 4 90034702 90034702 C G TIGD2 Missense_Mutation p.L193V 0.18 tolerated(0.53) benign(0.009) TCGA-XF-A9ST-01 4 9784494 9784494 G A DRD5 Missense_Mutation p.D281N 0.38 tolerated(0.11) benign(0.009) TCGA-XF-A9ST-01 5 118867038 118867038 G T HSD17B4 Missense_Mutation p.K669N 0.49 tolerated(0.07) probably_damaging(0.927) TCGA-XF-A9ST-01 5 131915076 131915076 G C RAD50 Missense_Mutation p.G145R 0.33 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 5 132197339 132197339 C A GDF9 Missense_Mutation p.G436V 0.20 deleterious(0) probably_damaging(0.969) TCGA-XF-A9ST-01 5 132403208 132403208 T C HSPA4 Missense_Mutation p.Y89H 0.26 deleterious(0.03) probably_damaging(0.991) TCGA-XF-A9ST-01 5 1335234 1335234 G A CLPTM1L Missense_Mutation p.S245L 0.43 deleterious(0.02) benign(0.156) TCGA-XF-A9ST-01 5 134296290 134296290 C T PCBD2 Silent p.L104L 0.50 TCGA-XF-A9ST-01 5 140480424 140480424 C A PCDHB3 Missense_Mutation p.A64D 0.50 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-XF-A9ST-01 5 142437206 142437206 G A ARHGAP26 Splice_Site p.X478_splice 0.55 TCGA-XF-A9ST-01 5 143586967 143586967 C G KCTD16 Missense_Mutation p.F230L 0.60 deleterious(0) probably_damaging(0.978) TCGA-XF-A9ST-01 5 14363968 14363972 ACTTG - TRIO Frame_Shift_Del p.L841Ffs*2 0.26 TCGA-XF-A9ST-01 5 14497097 14497097 G C TRIO Missense_Mutation p.E2664Q 0.42 unknown(0) TCGA-XF-A9ST-01 5 148743657 148743657 C T PCYOX1L Silent p.F118F 0.39 TCGA-XF-A9ST-01 5 151043649 151043649 C G SPARC Missense_Mutation p.Q294H 0.64 deleterious(0) benign(0.001) TCGA-XF-A9ST-01 5 156915379 156915379 G A ADAM19 Missense_Mutation p.A815V 0.25 tolerated(0.62) benign(0.002) TCGA-XF-A9ST-01 5 170148785 170148785 C A KCNIP1 Intron 0.69 TCGA-XF-A9ST-01 5 170148786 170148786 C A KCNIP1 Intron 0.69 TCGA-XF-A9ST-01 5 175782709 175782709 G A KIAA1191 Silent p.I24I 0.73 TCGA-XF-A9ST-01 5 177574631 177574631 T C RMND5B Silent p.L320L 0.48 TCGA-XF-A9ST-01 5 179320279 179320279 C T TBC1D9B Missense_Mutation p.E256K 0.21 tolerated(0.13) benign(0.003) TCGA-XF-A9ST-01 5 180430855 180430855 G C BTNL3 Splice_Site p.X263_splice 0.61 TCGA-XF-A9ST-01 5 181635 181635 G A PLEKHG4B Missense_Mutation p.R1114K 0.16 deleterious(0) probably_damaging(0.978) TCGA-XF-A9ST-01 5 23526739 23526739 G C PRDM9 Silent p.V514V 0.16 TCGA-XF-A9ST-01 5 31323114 31323114 A G CDH6 Missense_Mutation p.D691G 0.51 deleterious(0.02) probably_damaging(0.996) TCGA-XF-A9ST-01 5 38370443 38370443 G C EGFLAM Missense_Mutation p.Q197H 0.71 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-XF-A9ST-01 5 41158836 41158836 A T C6 Silent p.P636P 0.43 TCGA-XF-A9ST-01 5 42711357 42711357 G C GHR Missense_Mutation p.D223H 0.19 deleterious(0.03) probably_damaging(0.964) TCGA-XF-A9ST-01 5 50689553 50689553 G C ISL1 3'UTR 0.26 TCGA-XF-A9ST-01 5 57790631 57790631 C G GAPT Missense_Mutation p.H90D 0.15 tolerated(0.23) benign(0) TCGA-XF-A9ST-01 5 66492458 66492458 G C CD180 Missense_Mutation p.D4E 0.47 tolerated(0.98) benign(0.002) TCGA-XF-A9ST-01 5 68400417 68400417 T C SLC30A5 Intron 0.51 TCGA-XF-A9ST-01 5 72189008 72189019 CCGTACTGTGAA - TNPO1 In_Frame_Del p.Y612_P615del 0.37 TCGA-XF-A9ST-01 5 77745754 77745754 A T SCAMP1 Intron 0.33 TCGA-XF-A9ST-01 5 78379466 78379466 T C BHMT2 Missense_Mutation p.V266A 0.36 tolerated(0.22) benign(0.021) TCGA-XF-A9ST-01 5 78981104 78981104 C G PAPD4 3'UTR 0.34 TCGA-XF-A9ST-01 5 78981176 78981176 C A PAPD4 3'UTR 0.23 TCGA-XF-A9ST-01 5 80419516 80419516 G A RASGRF2 Silent p.A842A 0.15 TCGA-XF-A9ST-01 5 90079731 90079731 A C GPR98 Silent p.R4504R 0.53 TCGA-XF-A9ST-01 5 90669563 90669563 G A ARRDC3 Nonsense_Mutation p.Q376* 0.42 TCGA-XF-A9ST-01 6 102503375 102503375 G A GRIK2 Missense_Mutation p.A828T 0.21 tolerated(0.35) probably_damaging(0.967) TCGA-XF-A9ST-01 6 105609709 105609709 C G POPDC3 Missense_Mutation p.E26Q 0.22 tolerated(0.05) possibly_damaging(0.712) TCGA-XF-A9ST-01 6 107475944 107475944 G A PDSS2 Missense_Mutation p.S360L 0.22 tolerated(0.38) benign(0.313) TCGA-XF-A9ST-01 6 107780456 107780456 G C PDSS2 Missense_Mutation p.R12G 0.26 tolerated_low_confidence(0.21) benign(0) TCGA-XF-A9ST-01 6 10784785 10784785 G A MAK Missense_Mutation p.S446L 0.45 tolerated(0.37) benign(0) TCGA-XF-A9ST-01 6 111887764 111887764 C T TRAF3IP2 Splice_Site p.X454_splice 0.22 TCGA-XF-A9ST-01 6 119288118 119288118 C T FAM184A Splice_Site p.X972_splice 0.55 TCGA-XF-A9ST-01 6 12125993 12125993 C T HIVEP1 Missense_Mutation p.L1989F 0.56 tolerated(0.36) probably_damaging(0.937) TCGA-XF-A9ST-01 6 142519683 142519683 A T VTA1 Missense_Mutation p.T210S 0.41 tolerated(0.8) benign(0.005) TCGA-XF-A9ST-01 6 143074787 143074787 C T HIVEP2 Silent p.A2266A 0.69 TCGA-XF-A9ST-01 6 144167249 144167249 A G LTV1 Missense_Mutation p.Y66C 0.13 deleterious(0.03) probably_damaging(1) TCGA-XF-A9ST-01 6 144416628 144416628 C T SF3B5 Missense_Mutation p.D3N 0.59 deleterious(0.03) probably_damaging(0.917) TCGA-XF-A9ST-01 6 147124448 147124448 C T ADGB Intron 0.42 TCGA-XF-A9ST-01 6 150322548 150322548 A G RAET1K RNA 0.70 TCGA-XF-A9ST-01 6 155145433 155145433 G A SCAF8 Silent p.P664P 0.29 TCGA-XF-A9ST-01 6 155469371 155469371 T G TIAM2 Missense_Mutation p.L644R 0.25 deleterious(0.03) benign(0.273) TCGA-XF-A9ST-01 6 161173196 161173196 G A PLG Silent p.E725E 0.31 TCGA-XF-A9ST-01 6 163899810 163899810 A C QKI Splice_Site p.X96_splice 0.33 TCGA-XF-A9ST-01 6 166578115 166578115 G A T Silent p.S236S 0.13 TCGA-XF-A9ST-01 6 167709717 167709717 C T UNC93A Missense_Mutation p.S156L 0.27 deleterious(0) probably_damaging(0.998) TCGA-XF-A9ST-01 6 168325767 168325767 C - MLLT4 Frame_Shift_Del p.A1025Efs*9 0.19 TCGA-XF-A9ST-01 6 170110336 170110336 T C PHF10 Missense_Mutation p.Y370C 0.24 tolerated(0.08) possibly_damaging(0.497) TCGA-XF-A9ST-01 6 26031895 26031895 G C HIST1H3B Missense_Mutation p.R132G 0.09 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-XF-A9ST-01 6 26158743 26158743 A T HIST1H2BD Missense_Mutation p.T116S 0.10 deleterious_low_confidence(0.01) benign(0.236) TCGA-XF-A9ST-01 6 26199914 26199914 A G HIST1H2BF Missense_Mutation p.Y43C 0.44 deleterious_low_confidence(0) benign(0.279) TCGA-XF-A9ST-01 6 26405878 26405878 T A BTN3A1 Splice_Site p.X29_splice 0.12 TCGA-XF-A9ST-01 6 27215722 27215722 C A PRSS16 Silent p.G44G 0.41 TCGA-XF-A9ST-01 6 29080494 29080494 T A OR2J3 Missense_Mutation p.F276Y 0.39 deleterious(0) probably_damaging(0.953) TCGA-XF-A9ST-01 6 29323562 29323562 G C OR5V1 Missense_Mutation p.S137R 0.21 tolerated(0.14) benign(0) TCGA-XF-A9ST-01 6 29430007 29430007 C T OR2H1 Missense_Mutation p.S154L 0.58 deleterious(0) possibly_damaging(0.698) TCGA-XF-A9ST-01 6 30590659 30590659 C G MRPS18B Missense_Mutation p.F135L 0.42 tolerated(0.64) benign(0.195) TCGA-XF-A9ST-01 6 31118901 31118901 T G CCHCR1 Splice_Site p.X268_splice 0.25 TCGA-XF-A9ST-01 6 31239461 31239461 C G HLA-C Silent p.R86R 0.20 TCGA-XF-A9ST-01 6 31640091 31640091 C A CSNK2B-LY6G5B-1181 3'UTR 0.39 TCGA-XF-A9ST-01 6 32943902 32943902 T G BRD2 Missense_Mutation p.V189G 0.40 deleterious(0.03) benign(0.201) TCGA-XF-A9ST-01 6 32945230 32945230 G C BRD2 Missense_Mutation p.E404D 0.29 tolerated(1) benign(0.011) TCGA-XF-A9ST-01 6 33286937 33286937 G A DAXX Missense_Mutation p.P667L 0.24 deleterious(0) benign(0.198) TCGA-XF-A9ST-01 6 35454346 35454346 C G TEAD3 Missense_Mutation p.E32Q 0.30 deleterious(0) probably_damaging(0.976) TCGA-XF-A9ST-01 6 38759342 38759342 G C DNAH8 Missense_Mutation p.L714F 0.18 benign(0.07) TCGA-XF-A9ST-01 6 41039392 41039392 C T OARD1 5'UTR 0.41 TCGA-XF-A9ST-01 6 42658907 42658907 T A UBR2 Nonsense_Mutation p.L1755* 0.29 TCGA-XF-A9ST-01 6 43316264 43316264 G A ZNF318 Missense_Mutation p.A957V 0.47 possibly_damaging(0.637) TCGA-XF-A9ST-01 6 43323880 43323880 C G ZNF318 Missense_Mutation p.E398Q 0.17 possibly_damaging(0.87) TCGA-XF-A9ST-01 6 44197442 44197442 C T SLC29A1 Silent p.L76L 0.32 TCGA-XF-A9ST-01 6 47680203 47680203 G C GPR115 Missense_Mutation p.K137N 0.17 tolerated(0.12) benign(0.398) TCGA-XF-A9ST-01 6 55625253 55625253 A G BMP5 Splice_Site p.X368_splice 0.33 TCGA-XF-A9ST-01 6 56354382 56354382 A G DST Missense_Mutation p.M4305T 0.42 benign(0.06) TCGA-XF-A9ST-01 6 56472448 56472448 T G DST Intron 0.41 TCGA-XF-A9ST-01 6 76421112 76421112 A G SENP6 Silent p.L963L 0.58 TCGA-XF-A9ST-01 6 7891956 7891956 G C TXNDC5 Missense_Mutation p.I210M 0.34 deleterious(0) probably_damaging(0.993) TCGA-XF-A9ST-01 6 83858483 83858483 C T DOPEY1 Missense_Mutation p.P1913L 0.20 deleterious(0) benign(0.051) TCGA-XF-A9ST-01 6 85473828 85473828 C T TBX18 Silent p.A24A 0.50 TCGA-XF-A9ST-01 6 86223808 86223808 G A SNX14 Missense_Mutation p.S846L 0.31 tolerated(0.07) possibly_damaging(0.838) TCGA-XF-A9ST-01 6 97053892 97053892 A G FHL5 Missense_Mutation p.Y150C 0.31 deleterious(0) benign(0.424) TCGA-XF-A9ST-01 7 102939145 102939145 C T PMPCB Missense_Mutation p.S77L 0.68 tolerated(0.17) benign(0.008) TCGA-XF-A9ST-01 7 107592669 107592669 C G LAMB1 Splice_Site p.X1027_splice 0.46 TCGA-XF-A9ST-01 7 117023080 117023080 A G ASZ1 Silent p.L258L 0.38 TCGA-XF-A9ST-01 7 119914984 119914984 C T KCND2 Missense_Mutation p.R100C 0.63 deleterious(0) probably_damaging(1) TCGA-XF-A9ST-01 7 123097531 123097531 G C IQUB Silent p.V699V 0.65 TCGA-XF-A9ST-01 7 129933089 129933089 G A CPA4 Splice_Site p.X23_splice 0.25 TCGA-XF-A9ST-01 7 134618796 134618796 G C CALD1 Missense_Mutation p.D426H 0.32 tolerated_low_confidence(0.14) unknown(0) TCGA-XF-A9ST-01 7 135099129 135099129 C G CNOT4 Missense_Mutation p.R171T 0.25 deleterious(0) probably_damaging(0.92) TCGA-XF-A9ST-01 7 138437391 138437391 C A ATP6V0A4 Missense_Mutation p.K336N 0.14 deleterious(0.05) possibly_damaging(0.72) TCGA-XF-A9ST-01 7 151818672 151818672 G A GALNT11 Silent p.L579L 0.27 TCGA-XF-A9ST-01 7 19184452 19184452 C G FERD3L 3'UTR 0.39 TCGA-XF-A9ST-01 7 23239812 23239812 T A NUPL2 Missense_Mutation p.S240R 0.09 tolerated(0.09) benign(0.103) TCGA-XF-A9ST-01 7 27134028 27134050 GCCTGGGCTGTTGTCTGGGGCTG - HOXA1 3'UTR 0.79 TCGA-XF-A9ST-01 7 27203430 27203430 C G HOXA9 Missense_Mutation p.R204P 0.09 deleterious(0) probably_damaging(0.989) TCGA-XF-A9ST-01 7 30701769 30701772 TACT ACG CRHR2 Splice_Site p.X280_splice 0.40 TCGA-XF-A9ST-01 7 31009479 31009479 C T GHRHR Intron 0.27 TCGA-XF-A9ST-01 7 3861205 3861205 G A SDK1 Silent p.L279L 0.78 TCGA-XF-A9ST-01 7 44924385 44924385 T C PURB Missense_Mutation p.K188R 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9ST-01 7 4845213 4845213 G C RADIL Silent p.P758P 0.17 TCGA-XF-A9ST-01 7 77379117 77379117 G T RSBN1L Silent p.S360S 0.05 TCGA-XF-A9ST-01 7 77885556 77885556 G A MAGI2 Missense_Mutation p.P584L 0.62 tolerated(0.57) possibly_damaging(0.826) TCGA-XF-A9ST-01 7 83021968 83021968 T C SEMA3E Missense_Mutation p.S524G 0.55 deleterious(0.02) benign(0.184) TCGA-XF-A9ST-01 7 86998750 86998750 C G CROT Silent p.V230V 0.18 TCGA-XF-A9ST-01 7 87792399 87792399 A C ADAM22 Missense_Mutation p.Q660H 0.10 tolerated(0.09) benign(0.002) TCGA-XF-A9ST-01 7 88963371 88963371 C T ZNF804B Missense_Mutation p.H359Y 0.14 tolerated(1) benign(0.02) TCGA-XF-A9ST-01 7 94947686 94947686 G A PON1 Nonsense_Mutation p.R32* 0.19 TCGA-XF-A9ST-01 7 99461154 99461154 A G CYP3A43 Intron 0.77 TCGA-XF-A9ST-01 7 99798375 99798375 C T GATS 3'UTR 0.35 TCGA-XF-A9ST-01 8 101020669 101020669 A G RGS22 Silent p.Y765Y 0.44 TCGA-XF-A9ST-01 8 110590241 110590241 G C SYBU Missense_Mutation p.S247C 0.45 deleterious(0.02) possibly_damaging(0.882) TCGA-XF-A9ST-01 8 117955016 117955016 G T AARD 3'UTR 0.11 TCGA-XF-A9ST-01 8 124710782 124710782 G C ANXA13 Silent p.L109L 0.31 TCGA-XF-A9ST-01 8 125082837 125082837 A C FER1L6 Missense_Mutation p.K1322Q 0.04 deleterious(0) possibly_damaging(0.742) TCGA-XF-A9ST-01 8 130891679 130891704 CATGTCAAAACTTTAAGAAGATTCCC - FAM49B Frame_Shift_Del p.G2Hfs*4 0.13 TCGA-XF-A9ST-01 8 131127885 131127885 G C ASAP1 Missense_Mutation p.L721V 0.09 tolerated(0.09) probably_damaging(0.967) TCGA-XF-A9ST-01 8 133995659 133995659 T A TG Splice_Site p.X2088_splice 0.18 TCGA-XF-A9ST-01 8 139629196 139629196 G C COL22A1 Missense_Mutation p.F1277L 0.10 unknown(0) TCGA-XF-A9ST-01 8 141524465 141524465 T G CHRAC1 Intron 0.14 TCGA-XF-A9ST-01 8 143425520 143425520 C A TSNARE1 Silent p.L184L 0.14 TCGA-XF-A9ST-01 8 145109730 145109730 C G OPLAH Silent p.L832L 0.33 TCGA-XF-A9ST-01 8 1728491 1728491 C T CLN8 Silent p.L207L 0.29 TCGA-XF-A9ST-01 8 28047352 28047352 C G ELP3 3'UTR 0.31 TCGA-XF-A9ST-01 8 32620829 32620829 C A NRG1 Intron 0.23 TCGA-XF-A9ST-01 8 37630287 37630287 T G PROSC Missense_Mutation p.F112V 0.66 tolerated(0.21) benign(0.063) TCGA-XF-A9ST-01 8 41399415 41399415 A G GINS4 Missense_Mutation p.Q191R 0.93 deleterious(0.01) benign(0.009) TCGA-XF-A9ST-01 8 42692989 42692989 T A THAP1 3'UTR 0.43 TCGA-XF-A9ST-01 8 70650351 70650351 A C SLCO5A1 Silent p.T449T 0.24 TCGA-XF-A9ST-01 8 86041597 86041597 C A LRRCC1 Missense_Mutation p.Q537K 0.22 tolerated(0.08) benign(0.005) TCGA-XF-A9ST-01 8 98943201 98943201 C G MATN2 Missense_Mutation p.R55G 0.12 deleterious(0.03) benign(0.22) TCGA-XF-A9ST-01 9 100117171 100117171 C A CCDC180 Intron 0.17 TCGA-XF-A9ST-01 9 100190852 100190852 T A TDRD7 Silent p.T35T 0.38 TCGA-XF-A9ST-01 9 101243219 101243219 A G GABBR2 Missense_Mutation p.C265R 0.20 deleterious(0) probably_damaging(0.952) TCGA-XF-A9ST-01 9 104170442 104170442 G C ZNF189 Missense_Mutation p.R131T 0.60 tolerated(0.68) benign(0.004) TCGA-XF-A9ST-01 9 106892092 106892092 G C SMC2 Missense_Mutation p.R986T 0.28 deleterious(0.01) benign(0.117) TCGA-XF-A9ST-01 9 114489959 114489959 C A C9orf84 Missense_Mutation p.K532N 0.18 tolerated(0.2) benign(0.036) TCGA-XF-A9ST-01 9 115336341 115336341 G A KIAA1958 5'UTR 0.77 TCGA-XF-A9ST-01 9 118163570 118163570 C G DEC1 Silent p.P62P 0.14 TCGA-XF-A9ST-01 9 119109398 119109398 C G PAPPA Missense_Mutation p.Q1292E 0.68 tolerated(0.08) benign(0) TCGA-XF-A9ST-01 9 123725997 123725997 C G C5 Missense_Mutation p.E1414Q 0.15 deleterious(0) probably_damaging(0.958) TCGA-XF-A9ST-01 9 123917005 123917005 C T CNTRL Silent p.F1393F 0.18 TCGA-XF-A9ST-01 9 123917099 123917099 G A CNTRL Missense_Mutation p.E1425K 0.13 probably_damaging(0.999) TCGA-XF-A9ST-01 9 127110016 127110016 G T NEK6 Missense_Mutation p.G283V 0.66 deleterious(0.01) possibly_damaging(0.792) TCGA-XF-A9ST-01 9 127999158 127999158 C G HSPA5 Missense_Mutation p.D560H 0.69 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-XF-A9ST-01 9 127999332 127999332 C G HSPA5 Missense_Mutation p.E502Q 0.70 deleterious_low_confidence(0.02) benign(0.262) TCGA-XF-A9ST-01 9 129157882 129157882 C T MVB12B Nonsense_Mutation p.R190* 0.69 TCGA-XF-A9ST-01 9 131747191 131747191 G A NUP188 Missense_Mutation p.M658I 0.16 tolerated(0.06) possibly_damaging(0.843) TCGA-XF-A9ST-01 9 132084729 132084729 C G C9orf106 RNA 0.19 TCGA-XF-A9ST-01 9 132565492 132565492 A G TOR1B Translation_Start_Site p.M1? 0.75 deleterious_low_confidence(0.02) unknown(0) TCGA-XF-A9ST-01 9 134406058 134406058 G C UCK1 Missense_Mutation p.A33G 0.20 tolerated(0.1) benign(0.148) TCGA-XF-A9ST-01 9 135277344 135277344 C T TTF1 Missense_Mutation p.E289K 0.22 tolerated_low_confidence(0.14) benign(0.032) TCGA-XF-A9ST-01 9 135776988 135776988 C G TSC1 Missense_Mutation p.Q830H 0.70 deleterious(0) benign(0.416) TCGA-XF-A9ST-01 9 136305505 136305505 G A ADAMTS13 Missense_Mutation p.M609I 0.80 tolerated(0.06) benign(0) TCGA-XF-A9ST-01 9 136305564 136305564 G C ADAMTS13 Missense_Mutation p.R629T 0.70 deleterious(0.03) possibly_damaging(0.597) TCGA-XF-A9ST-01 9 136662855 136662855 C T VAV2 Missense_Mutation p.E305K 0.31 deleterious(0) possibly_damaging(0.481) TCGA-XF-A9ST-01 9 138679967 138679967 C T KCNT1 Intron 0.14 TCGA-XF-A9ST-01 9 139302367 139302367 C T SDCCAG3 Missense_Mutation p.E105K 0.19 deleterious(0) possibly_damaging(0.786) TCGA-XF-A9ST-01 9 139409131 139409131 C A NOTCH1 Missense_Mutation p.D680Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-XF-A9ST-01 9 140139831 140139831 C G FAM166A Missense_Mutation p.L150F 0.20 tolerated(0.55) benign(0.004) TCGA-XF-A9ST-01 9 18950936 18950936 C T FAM154A Splice_Site p.X13_splice 0.34 TCGA-XF-A9ST-01 9 34997059 34997059 G T DNAJB5 Missense_Mutation p.D398Y 0.18 deleterious(0) probably_damaging(0.991) TCGA-XF-A9ST-01 9 35403841 35403858 TGTGATGCCTCTGAGGGA - UNC13B In_Frame_Del p.M1531_V1536del 0.57 TCGA-XF-A9ST-01 9 35609271 35609271 G C TESK1 Missense_Mutation p.E471D 0.24 tolerated(0.24) benign(0.033) TCGA-XF-A9ST-01 9 35826128 35826128 G A FAM221B Missense_Mutation p.H11Y 0.28 tolerated(0.17) benign(0.013) TCGA-XF-A9ST-01 9 36117011 36117011 C A RECK Missense_Mutation p.T697K 0.19 deleterious(0.01) benign(0.44) TCGA-XF-A9ST-01 9 36643017 36643017 C T MELK Silent p.C286C 0.34 TCGA-XF-A9ST-01 9 8517968 8517968 G A PTPRD Nonsense_Mutation p.Q475* 0.87 TCGA-XF-A9ST-01 9 86900856 86900856 A G SLC28A3 Splice_Site p.X483_splice 0.56 TCGA-XF-A9ST-01 9 90318018 90318018 C G DAPK1 Silent p.P982P 0.29 TCGA-XF-A9ST-01 9 91930187 91930187 G T CKS2 Missense_Mutation p.W54C 0.27 deleterious(0) probably_damaging(0.983) TCGA-XF-A9ST-01 X 106171908 106171908 A G CLDN2 Silent p.P150P 0.95 TCGA-XF-A9ST-01 X 115589981 115589981 A G SLC6A14 Missense_Mutation p.I597V 0.92 tolerated(0.38) benign(0) TCGA-XF-A9ST-01 X 123197803 123197813 GAGTTCACAAT - STAG2 Frame_Shift_Del p.E643Lfs*14 0.85 TCGA-XF-A9ST-01 X 131351282 131351282 C G RAP2C Missense_Mutation p.K5N 0.91 tolerated(0.05) probably_damaging(0.921) TCGA-XF-A9ST-01 X 140336605 140336605 C A SPANXC 5'UTR 0.10 TCGA-XF-A9ST-01 X 142803687 142803687 C G SPANXN2 Missense_Mutation p.E26Q 0.91 tolerated_low_confidence(0.13) possibly_damaging(0.457) TCGA-XF-A9ST-01 X 23693156 23693156 G T PRDX4 Nonsense_Mutation p.E137* 0.91 TCGA-XF-A9ST-01 X 27998165 27998165 C T DCAF8L1 Silent p.K429K 0.80 TCGA-XF-A9ST-01 X 38262959 38262959 A T OTC Missense_Mutation p.K210I 0.87 deleterious(0) probably_damaging(0.992) TCGA-XF-A9ST-01 X 49040353 49040353 C T PRICKLE3 Missense_Mutation p.C49Y 0.50 deleterious(0) probably_damaging(0.993) TCGA-XF-A9ST-01 X 55651072 55651072 G C FOXR2 Missense_Mutation p.D310H 0.75 tolerated(0.1) benign(0.049) TCGA-XF-A9SU-01 10 115413821 115413821 C T NRAP Missense_Mutation p.E142K 0.09 deleterious(0.04) benign(0.012) TCGA-XF-A9SU-01 10 15883574 15883574 C T FAM188A Missense_Mutation p.C87Y 0.06 tolerated(0.08) benign(0.424) TCGA-XF-A9SU-01 10 76857615 76857615 G A DUSP13 Missense_Mutation p.R60W 0.16 tolerated(0.14) probably_damaging(0.992) TCGA-XF-A9SU-01 11 114270864 114270864 C T C11orf71 Missense_Mutation p.E64K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.684) TCGA-XF-A9SU-01 11 117667836 117667836 C T DSCAML1 Missense_Mutation p.A47T 0.25 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9SU-01 11 13743295 13743295 T C FAR1 Silent p.T382T 0.26 TCGA-XF-A9SU-01 11 85422191 85422191 G A SYTL2 Missense_Mutation p.L937F 0.09 deleterious(0.05) probably_damaging(0.924) TCGA-XF-A9SU-01 11 88961033 88961033 G A TYR Missense_Mutation p.S360N 0.08 tolerated(0.25) probably_damaging(0.999) TCGA-XF-A9SU-01 11 9606861 9606861 G A WEE1 Missense_Mutation p.E449K 0.13 deleterious(0.02) possibly_damaging(0.615) TCGA-XF-A9SU-01 12 109182728 109182728 C A SSH1 Missense_Mutation p.G729V 0.06 deleterious_low_confidence(0.02) benign(0.004) TCGA-XF-A9SU-01 12 112182675 112182675 C T ACAD10 Missense_Mutation p.S679L 0.24 deleterious(0.05) benign(0.376) TCGA-XF-A9SU-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.28 deleterious(0) benign(0.361) TCGA-XF-A9SU-01 12 274656 274656 A G IQSEC3 Silent p.S922S 0.36 TCGA-XF-A9SU-01 12 50475346 50475346 C T ASIC1 Missense_Mutation p.R547W 0.17 tolerated(0.06) probably_damaging(0.933) TCGA-XF-A9SU-01 13 108922337 108922337 C T TNFSF13B Missense_Mutation p.P32S 0.15 tolerated(0.06) benign(0.115) TCGA-XF-A9SU-01 13 110862335 110862335 C T COL4A1 Missense_Mutation p.G203R 0.13 unknown(0) TCGA-XF-A9SU-01 13 23906197 23906197 C T SACS Missense_Mutation p.V3940M 0.19 probably_damaging(0.994) TCGA-XF-A9SU-01 14 68260450 68260450 G T ZFYVE26 Silent p.R810R 0.16 TCGA-XF-A9SU-01 14 69256543 69256544 - AG ZFP36L1 Frame_Shift_Ins p.T242Lfs*66 0.08 TCGA-XF-A9SU-01 14 69256926 69256927 - GGCT ZFP36L1 Frame_Shift_Ins p.R114Qfs*12 0.19 TCGA-XF-A9SU-01 15 63920954 63920954 T C HERC1 Missense_Mutation p.K4343E 0.09 probably_damaging(0.998) TCGA-XF-A9SU-01 15 79748964 79748964 C T KIAA1024 Missense_Mutation p.R159W 0.06 deleterious(0.03) possibly_damaging(0.539) TCGA-XF-A9SU-01 16 75269625 75269625 C T BCAR1 Missense_Mutation p.R437H 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-XF-A9SU-01 17 4453489 4453489 C T MYBBP1A Missense_Mutation p.V395M 0.15 deleterious(0.01) possibly_damaging(0.78) TCGA-XF-A9SU-01 17 76454681 76454681 C T DNAH17 Missense_Mutation p.D3301N 0.13 benign(0.091) TCGA-XF-A9SU-01 18 30969585 30969585 T G CCDC178 Missense_Mutation p.M43L 0.06 tolerated(0.4) benign(0.002) TCGA-XF-A9SU-01 18 66364429 66364429 A C TMX3 Intron 0.50 TCGA-XF-A9SU-01 19 1784821 1784821 G A ATP8B3 Silent p.A1219A 0.21 TCGA-XF-A9SU-01 19 18546224 18546224 A G ISYNA1 Missense_Mutation p.F442L 0.14 tolerated(0.37) benign(0.05) TCGA-XF-A9SU-01 19 54219875 54219875 G T MIR521-2 RNA 0.05 TCGA-XF-A9SU-01 19 55994305 55994305 G A ZNF628 Missense_Mutation p.R582Q 0.17 tolerated(0.16) possibly_damaging(0.908) TCGA-XF-A9SU-01 19 7685538 7685538 G A XAB2 Silent p.H663H 0.06 TCGA-XF-A9SU-01 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.07 tolerated(0.43) possibly_damaging(0.602) TCGA-XF-A9SU-01 1 119965138 119965138 G A HSD3B2 Silent p.A338A 0.15 TCGA-XF-A9SU-01 1 156721233 156721233 G A HDGF Intron 0.38 TCGA-XF-A9SU-01 1 208234107 208234107 A G PLXNA2 Missense_Mutation p.S888P 0.06 tolerated(0.18) probably_damaging(0.917) TCGA-XF-A9SU-01 1 223165393 223165393 G C DISP1 Missense_Mutation p.R277T 0.06 deleterious(0.01) possibly_damaging(0.516) TCGA-XF-A9SU-01 1 99387595 99387595 A G LPPR5 Missense_Mutation p.I214T 0.09 deleterious(0.02) benign(0.122) TCGA-XF-A9SU-01 20 17338981 17338981 G A PCSK2 Missense_Mutation p.A98T 0.20 tolerated(0.41) benign(0.101) TCGA-XF-A9SU-01 20 43384864 43384864 T C RIMS4 Missense_Mutation p.M242V 0.20 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-XF-A9SU-01 20 476409 476409 C G CSNK2A1 Missense_Mutation p.R155T 0.19 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SU-01 20 6068460 6068460 G A FERMT1 Silent p.A445A 0.20 TCGA-XF-A9SU-01 22 44022419 44022419 C G EFCAB6 Missense_Mutation p.L791F 0.14 deleterious(0.02) probably_damaging(0.914) TCGA-XF-A9SU-01 22 46742442 46742443 - T TRMU Splice_Site p.X160_splice 0.11 TCGA-XF-A9SU-01 2 20886812 20886812 C G C2orf43 Missense_Mutation p.E277Q 0.16 tolerated(0.94) benign(0.062) TCGA-XF-A9SU-01 2 241712572 241712572 C T KIF1A Missense_Mutation p.R380Q 0.21 deleterious(0.04) possibly_damaging(0.559) TCGA-XF-A9SU-01 3 135871463 135871463 T C MSL2 Missense_Mutation p.Y87C 0.28 deleterious(0.04) possibly_damaging(0.698) TCGA-XF-A9SU-01 3 169587505 169587505 C T LRRC31 Missense_Mutation p.E31K 0.30 tolerated(0.46) benign(0.003) TCGA-XF-A9SU-01 3 85932471 85932471 G A CADM2 Missense_Mutation p.R83H 0.23 tolerated(0.07) benign(0.04) TCGA-XF-A9SU-01 4 78830443 78830443 A C MRPL1 Missense_Mutation p.K232Q 0.12 tolerated(0.19) benign(0.059) TCGA-XF-A9SU-01 5 118274979 118274979 T C DTWD2 Missense_Mutation p.K106E 0.14 deleterious(0) possibly_damaging(0.527) TCGA-XF-A9SU-01 5 140167909 140167909 G A PCDHA1 Silent p.A678A 0.09 TCGA-XF-A9SU-01 5 140168077 140168077 G A PCDHA1 Silent p.P734P 0.06 TCGA-XF-A9SU-01 5 140481456 140481456 C T PCDHB3 Missense_Mutation p.A408V 0.14 deleterious_low_confidence(0.03) benign(0.05) TCGA-XF-A9SU-01 5 140554152 140554152 C T PCDHB7 Missense_Mutation p.A579V 0.09 deleterious_low_confidence(0.02) benign(0.287) TCGA-XF-A9SU-01 5 156565695 156565695 T C MED7 3'UTR 0.18 TCGA-XF-A9SU-01 5 59284349 59284349 G A PDE4D Missense_Mutation p.P80S 0.04 tolerated_low_confidence(0.15) benign(0.061) TCGA-XF-A9SU-01 5 82817330 82817330 G A VCAN Missense_Mutation p.D1069N 0.16 tolerated(0.06) benign(0.023) TCGA-XF-A9SU-01 6 43250570 43250570 C T TTBK1 Missense_Mutation p.R698W 0.24 possibly_damaging(0.8) TCGA-XF-A9SU-01 6 76022751 76022751 C T FILIP1 Missense_Mutation p.E933K 0.12 deleterious(0) possibly_damaging(0.907) TCGA-XF-A9SU-01 7 123508588 123508588 C T HYAL4 Silent p.V87V 0.06 TCGA-XF-A9SU-01 7 51092921 51092921 G C COBL Missense_Mutation p.S1218C 0.19 tolerated(0.09) benign(0.01) TCGA-XF-A9SU-01 7 87046671 87046671 C T ABCB4 Missense_Mutation p.G880E 0.06 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SU-01 7 97944836 97944836 C T BAIAP2L1 Missense_Mutation p.R192H 0.26 deleterious(0) probably_damaging(1) TCGA-XF-A9SU-01 8 124381391 124381391 T C ATAD2 Missense_Mutation p.N319S 0.19 tolerated(0.59) benign(0.003) TCGA-XF-A9SU-01 8 133880458 133880458 G A TG Missense_Mutation p.G56S 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9SU-01 8 40532241 40532241 C G ZMAT4 Missense_Mutation p.D187H 0.14 tolerated(0.09) benign(0.022) TCGA-XF-A9SU-01 9 34241585 34241585 A G UBAP1 Missense_Mutation p.T252A 0.31 tolerated(0.14) benign(0.297) TCGA-XF-A9SU-01 9 90345407 90345407 A G CTSL Missense_Mutation p.K299R 0.44 deleterious(0) probably_damaging(1) TCGA-XF-A9SU-01 X 134654980 134654980 C T DDX26B Silent p.G21G 0.20 TCGA-XF-A9SU-01 X 54839984 54839984 G T MAGED2 Splice_Site p.X424_splice 0.13 TCGA-XF-A9SV-01 10 26830540 26830540 G A APBB1IP Silent p.Q358Q 0.24 TCGA-XF-A9SV-01 10 38681008 38681008 C G SEPT7P9 RNA 0.21 TCGA-XF-A9SV-01 10 43292475 43292475 G A BMS1 Missense_Mutation p.E595K 0.18 tolerated(0.44) benign(0.004) TCGA-XF-A9SV-01 10 52573720 52573720 C T A1CF Missense_Mutation p.G415E 0.30 tolerated(0.48) benign(0.425) TCGA-XF-A9SV-01 10 85984762 85984762 C G LRIT2 Silent p.G73G 0.30 TCGA-XF-A9SV-01 10 96702116 96702116 A G CYP2C9 Intron 0.16 TCGA-XF-A9SV-01 11 26538474 26538474 G A ANO3 Missense_Mutation p.R231K 0.69 tolerated(1) probably_damaging(0.989) TCGA-XF-A9SV-01 11 55861323 55861323 C A OR8I2 Silent p.T180T 0.52 TCGA-XF-A9SV-01 11 60640854 60640854 C A ZP1 Missense_Mutation p.T416N 0.24 tolerated(0.15) possibly_damaging(0.904) TCGA-XF-A9SV-01 11 62444340 62444340 G A UBXN1 Silent p.G263G 0.35 TCGA-XF-A9SV-01 11 6245405 6245405 T C FAM160A2 Missense_Mutation p.N71S 0.22 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SV-01 11 66888808 66888808 G A KDM2A Silent p.R7R 0.55 TCGA-XF-A9SV-01 11 72421490 72421490 G C ARAP1 Missense_Mutation p.F452L 0.71 tolerated(0.65) benign(0.003) TCGA-XF-A9SV-01 11 88300723 88300723 C A GRM5 Missense_Mutation p.A710S 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-XF-A9SV-01 12 121202799 121202799 C T SPPL3 3'UTR 0.39 TCGA-XF-A9SV-01 12 124069350 124069350 A G TMED2 Missense_Mutation p.D56G 0.28 deleterious(0.03) probably_damaging(0.914) TCGA-XF-A9SV-01 12 53200853 53200853 C T KRT4 Silent p.%3D 0.11 TCGA-XF-A9SV-01 13 110847443 110847443 G A COL4A1 Silent p.P436P 0.21 TCGA-XF-A9SV-01 13 113744281 113744281 G T MCF2L Intron 0.20 TCGA-XF-A9SV-01 14 107113835 107113835 C T IGHV3-64 Missense_Mutation p.R87K 0.12 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-XF-A9SV-01 14 23374586 23374586 G A RBM23 Missense_Mutation p.R178W 0.17 deleterious(0.02) probably_damaging(0.977) TCGA-XF-A9SV-01 14 50807749 50807749 C A CDKL1 Splice_Site p.X220_splice 0.12 TCGA-XF-A9SV-01 15 100636625 100636625 G A ADAMTS17 Silent p.V691V 0.19 TCGA-XF-A9SV-01 16 20565115 20565115 C A ACSM2B Missense_Mutation p.A242S 0.26 tolerated(0.48) benign(0.031) TCGA-XF-A9SV-01 16 20565116 20565116 C A ACSM2B Missense_Mutation p.K241N 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-XF-A9SV-01 16 2488112 2488112 G C CCNF Silent p.L194L 0.19 TCGA-XF-A9SV-01 16 46696329 46696329 G A VPS35 Silent p.I631I 0.18 TCGA-XF-A9SV-01 16 65025671 65025671 T A CDH11 Missense_Mutation p.S271C 0.27 deleterious(0) possibly_damaging(0.574) TCGA-XF-A9SV-01 16 72829207 72829207 C T ZFHX3 Silent p.E2458E 0.33 TCGA-XF-A9SV-01 17 45891146 45891146 G A OSBPL7 Missense_Mutation p.A469V 0.39 deleterious(0.04) possibly_damaging(0.603) TCGA-XF-A9SV-01 17 78055728 78055728 C T CCDC40 Silent p.G620G 0.20 TCGA-XF-A9SV-01 17 8926154 8926154 G A NTN1 Missense_Mutation p.R155Q 0.50 tolerated(0.05) probably_damaging(0.999) TCGA-XF-A9SV-01 18 50450146 50450146 A G DCC Missense_Mutation p.D256G 0.26 tolerated(0.21) benign(0.031) TCGA-XF-A9SV-01 18 66513623 66513623 G A CCDC102B Missense_Mutation p.E301K 0.20 deleterious(0.04) possibly_damaging(0.453) TCGA-XF-A9SV-01 19 14674037 14674037 T C TECR Missense_Mutation p.I29T 0.32 deleterious(0.03) benign(0.011) TCGA-XF-A9SV-01 19 30935048 30935048 C T ZNF536 Silent p.R193R 0.33 TCGA-XF-A9SV-01 19 37733938 37733938 C G ZNF383 Nonsense_Mutation p.S267* 0.18 TCGA-XF-A9SV-01 19 38990323 38990323 G A RYR1 Missense_Mutation p.R2359Q 0.33 benign(0.005) TCGA-XF-A9SV-01 19 44284957 44284957 C T KCNN4 Silent p.L19L 0.52 TCGA-XF-A9SV-01 19 463990 463990 C T ODF3L2 Missense_Mutation p.A242T 0.50 tolerated(1) benign(0.004) TCGA-XF-A9SV-01 19 53911282 53911282 G A ZNF765 Silent p.E158E 0.53 TCGA-XF-A9SV-01 19 54722677 54722677 G T LILRB3 Missense_Mutation p.A486E 0.55 deleterious(0.01) possibly_damaging(0.837) TCGA-XF-A9SV-01 19 9075072 9075072 G A MUC16 Missense_Mutation p.T4125M 0.33 unknown(0) TCGA-XF-A9SV-01 1 145788784 145788784 C A GPR89A Missense_Mutation p.D267Y 0.30 tolerated(0.08) benign(0.159) TCGA-XF-A9SV-01 1 186646844 186646844 C T PTGS2 Silent p.T192T 0.12 TCGA-XF-A9SV-01 1 201982307 201982308 - AG ELF3 Intron p.D230Efs*25 0.47 TCGA-XF-A9SV-01 1 91406361 91406361 C T ZNF644 Missense_Mutation p.A184T 0.11 tolerated(0.92) benign(0.001) TCGA-XF-A9SV-01 20 40790072 40790072 C T PTPRT Missense_Mutation p.A868T 0.52 deleterious(0) probably_damaging(0.95) TCGA-XF-A9SV-01 21 34926190 34926190 T C SON Silent p.C1551C 0.28 TCGA-XF-A9SV-01 21 38390386 38390386 A C RIPPLY3 Missense_Mutation p.K151T 0.13 tolerated(0.09) possibly_damaging(0.859) TCGA-XF-A9SV-01 21 47966962 47966962 C T DIP2A Intron 0.12 TCGA-XF-A9SV-01 22 29957498 29957498 G C NIPSNAP1 Silent p.L192L 0.19 TCGA-XF-A9SV-01 22 32924934 32924934 G A SYN3 Missense_Mutation p.A386V 0.08 tolerated(0.31) unknown(0) TCGA-XF-A9SV-01 22 50297885 50297885 C T ALG12 Missense_Mutation p.D394N 0.17 probably_damaging(0.994) TCGA-XF-A9SV-01 2 100919382 100919382 C G LONRF2 Splice_Site p.X307_splice 0.61 TCGA-XF-A9SV-01 2 101611915 101611915 C T NPAS2 Silent p.S782S 0.49 TCGA-XF-A9SV-01 2 121036307 121036307 G C RALB Missense_Mutation p.G23R 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-XF-A9SV-01 2 125175086 125175086 C T CNTNAP5 Nonsense_Mutation p.R150* 0.21 TCGA-XF-A9SV-01 2 128177458 128177458 C T PROC Intron 0.36 TCGA-XF-A9SV-01 2 132914577 132914577 G A ANKRD30BL Missense_Mutation p.S159F 0.30 tolerated(0.09) probably_damaging(0.994) TCGA-XF-A9SV-01 2 137990654 137990654 C G THSD7B Missense_Mutation p.R701G 0.37 deleterious(0) possibly_damaging(0.858) TCGA-XF-A9SV-01 2 207408040 207408040 G A ADAM23 Silent p.E240E 0.18 TCGA-XF-A9SV-01 2 228882340 228882340 C T SPHKAP Missense_Mutation p.R1077Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SV-01 2 27263068 27263068 T A TMEM214 Splice_Site p.X597_splice 0.53 TCGA-XF-A9SV-01 2 39262381 39262381 T C SOS1 Missense_Mutation p.H349R 0.41 deleterious(0) probably_damaging(0.974) TCGA-XF-A9SV-01 2 79384717 79384717 C T REG3A Silent p.A147A 0.27 TCGA-XF-A9SV-01 2 9083342 9083342 G A MBOAT2 Silent p.I91I 0.03 TCGA-XF-A9SV-01 2 9083348 9083348 G T MBOAT2 Silent p.I89I 0.03 TCGA-XF-A9SV-01 3 128127176 128127176 C G EEFSEC 3'UTR 0.31 TCGA-XF-A9SV-01 3 169557758 169557758 T C LRRC31 3'UTR 0.30 TCGA-XF-A9SV-01 3 184009213 184009213 G A ECE2 Missense_Mutation p.V821M 0.20 deleterious(0.02) probably_damaging(0.934) TCGA-XF-A9SV-01 3 37285072 37285072 G A GOLGA4 Missense_Mutation p.E11K 0.54 unknown(0) TCGA-XF-A9SV-01 3 50355891 50355891 T C HYAL2 Missense_Mutation p.Y364C 0.54 tolerated(0.1) benign(0.375) TCGA-XF-A9SV-01 4 106603802 106603802 T C INTS12 3'UTR 0.21 TCGA-XF-A9SV-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.44 deleterious(0.01) possibly_damaging(0.594) TCGA-XF-A9SV-01 4 38016153 38016153 C G TBC1D1 Missense_Mutation p.I147M 0.39 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SV-01 4 47570898 47570898 G A ATP10D Silent p.Q966Q 0.56 TCGA-XF-A9SV-01 4 667135 667135 C T ATP5I Silent p.K49K 0.17 TCGA-XF-A9SV-01 6 117250119 117250119 C T RFX6 Nonsense_Mutation p.R866* 0.11 TCGA-XF-A9SV-01 6 126080649 126080649 C T HEY2 Nonsense_Mutation p.R239* 0.04 TCGA-XF-A9SV-01 6 151197292 151197292 G A MTHFD1L Silent p.P98P 0.39 TCGA-XF-A9SV-01 7 103018077 103018077 A C SLC26A5 Missense_Mutation p.I652S 0.18 deleterious(0) benign(0.366) TCGA-XF-A9SV-01 7 108119823 108128201 7:108119823-108128201 - PNPLA8 large deletion p.X627_splice 0.19 TCGA-XF-A9SV-01 7 121942209 121942209 C T FEZF1 Missense_Mutation p.D424N 0.39 deleterious(0.01) probably_damaging(0.912) TCGA-XF-A9SV-01 7 128413755 128413755 G A OPN1SW Missense_Mutation p.S292F 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-XF-A9SV-01 7 142013038 142013038 G T TRBV4-1 Translation_Start_Site p.M1? 0.37 deleterious(0.01) unknown(0) TCGA-XF-A9SV-01 7 142143882 142143882 C A TRBV6-7 Missense_Mutation p.M38I 0.31 tolerated(0.21) benign(0.137) TCGA-XF-A9SV-01 7 157151247 157151247 T G DNAJB6 5'UTR 0.33 TCGA-XF-A9SV-01 8 131861910 131861910 C A ADCY8 Missense_Mutation p.A784S 0.20 deleterious(0) benign(0.016) TCGA-XF-A9SV-01 8 48744473 48744473 T G PRKDC Missense_Mutation p.T2722P 0.20 benign(0.038) TCGA-XF-A9SV-01 8 67504726 67504726 C G MYBL1 Missense_Mutation p.E272D 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-XF-A9SV-01 8 87683187 87683187 C A CNGB3 Missense_Mutation p.A160S 0.44 tolerated(0.44) benign(0.009) TCGA-XF-A9SV-01 9 130478377 130478377 C T PTRH1 5'UTR 0.76 TCGA-XF-A9SV-01 9 131394708 131394708 A G SPTAN1 Splice_Site p.X2320_splice 0.68 TCGA-XF-A9SV-01 9 15474049 15474050 GG - PSIP1 Frame_Shift_Del p.T272Ifs*4 0.27 TCGA-XF-A9SV-01 9 19378706 19378707 - T RPS6 Frame_Shift_Ins p.G117Rfs*10 0.25 TCGA-XF-A9SV-01 9 21305192 21305192 G C IFNA5 Missense_Mutation p.L22V 0.32 deleterious(0) benign(0.157) TCGA-XF-A9SV-01 X 100242379 100242379 G A ARL13A Missense_Mutation p.E163K 0.77 deleterious(0.01) possibly_damaging(0.62) TCGA-XF-A9SW-01 10 26581456 26581456 C T GAD2 Silent p.N483N 0.14 TCGA-XF-A9SW-01 10 95719324 95719324 C T PIPSL RNA 0.12 TCGA-XF-A9SW-01 11 47280694 47280694 C G NR1H3 5'UTR 0.20 TCGA-XF-A9SW-01 11 61919432 61919432 G T INCENP Missense_Mutation p.S914I 0.14 deleterious(0.01) possibly_damaging(0.475) TCGA-XF-A9SW-01 11 77589972 77589972 C T INTS4 3'UTR 0.06 TCGA-XF-A9SW-01 12 121202772 121202772 C T SPPL3 3'UTR 0.19 TCGA-XF-A9SW-01 12 131487741 131487741 G A GPR133 Silent p.V346V 0.33 TCGA-XF-A9SW-01 12 27470927 27470927 G A STK38L Missense_Mutation p.E352K 0.15 tolerated(0.76) benign(0.009) TCGA-XF-A9SW-01 12 53069127 53069127 G A KRT1 Silent p.G595G 0.17 TCGA-XF-A9SW-01 12 6933419 6933419 G A GPR162 Missense_Mutation p.V119M 0.15 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SW-01 12 7651507 7651507 C T CD163 Silent p.K245K 0.12 TCGA-XF-A9SW-01 13 26542749 26542749 G A ATP8A2 Silent p.E1103E 0.15 TCGA-XF-A9SW-01 13 32813913 32813913 G A FRY Silent p.T2194T 0.05 TCGA-XF-A9SW-01 13 49030426 49030426 C A RB1 Nonsense_Mutation p.S634* 0.21 TCGA-XF-A9SW-01 13 67799729 67799729 A G PCDH9 Silent p.F948F 0.14 TCGA-XF-A9SW-01 14 103336772 103336772 G A TRAF3 Silent p.A78A 0.20 TCGA-XF-A9SW-01 14 22772176 22772176 A G TRAV39 Silent p.E23E 0.23 TCGA-XF-A9SW-01 14 89878778 89878778 C T FOXN3 Missense_Mutation p.G15R 0.11 deleterious(0) probably_damaging(1) TCGA-XF-A9SW-01 15 31321574 31321574 G A TRPM1 Missense_Mutation p.P1067S 0.08 deleterious(0.04) possibly_damaging(0.624) TCGA-XF-A9SW-01 16 46655241 46655241 G A SHCBP1 Silent p.L11L 0.14 TCGA-XF-A9SW-01 16 54967864 54967864 G A IRX5 3'UTR 0.30 TCGA-XF-A9SW-01 17 57139956 57139956 C A TRIM37 Missense_Mutation p.G305V 0.07 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SW-01 17 74077282 74077291 GCTCCAGTCT - EXOC7 3'Flank 0.22 TCGA-XF-A9SW-01 17 74562135 74562135 G A ST6GALNAC2 3'UTR 0.18 TCGA-XF-A9SW-01 18 7949327 7949327 C T PTPRM Missense_Mutation p.S271L 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A9SW-01 19 10078713 10078713 G A COL5A3 Missense_Mutation p.P1453S 0.24 unknown(0) TCGA-XF-A9SW-01 19 13941598 13941598 G A ZSWIM4 Missense_Mutation p.A902T 0.08 tolerated(0.28) unknown(0) TCGA-XF-A9SW-01 19 49425159 49425159 G C NUCB1 Missense_Mutation p.E417Q 0.27 tolerated(0.27) benign(0.007) TCGA-XF-A9SW-01 19 49636505 49636505 G A PPFIA3 Silent p.K346K 0.32 TCGA-XF-A9SW-01 19 52272624 52272624 G A FPR2 Missense_Mutation p.R238H 0.24 tolerated(0.1) possibly_damaging(0.458) TCGA-XF-A9SW-01 19 8651317 8651317 C A ADAMTS10 Missense_Mutation p.R814L 0.25 deleterious(0.02) benign(0.231) TCGA-XF-A9SW-01 1 153005017 153005017 C T SPRR1B Missense_Mutation p.H66Y 0.17 tolerated(0.42) benign(0.361) TCGA-XF-A9SW-01 1 156376747 156376747 C T C1orf61 Intron 0.34 TCGA-XF-A9SW-01 1 161480633 161480633 T C FCGR2A Missense_Mutation p.M210T 0.25 tolerated(0.6) benign(0.001) TCGA-XF-A9SW-01 1 171510093 171510093 A C PRRC2C Missense_Mutation p.K1161T 0.09 unknown(0) TCGA-XF-A9SW-01 1 201751421 201751421 C T NAV1 Missense_Mutation p.S594L 0.15 deleterious(0) probably_damaging(0.977) TCGA-XF-A9SW-01 1 27107087 27107087 G - ARID1A Frame_Shift_Del p.A2234Lfs*33 0.23 TCGA-XF-A9SW-01 1 28161031 28161031 C G PPP1R8 Intron 0.40 TCGA-XF-A9SW-01 1 33583527 33583527 T C ADC Missense_Mutation p.Y352H 0.31 tolerated(0.34) benign(0.014) TCGA-XF-A9SW-01 20 37202942 37202942 G A RALGAPB Splice_Site p.X1431_splice 0.14 TCGA-XF-A9SW-01 20 60903988 60903988 G A LAMA5 Silent p.F1453F 0.13 TCGA-XF-A9SW-01 21 19638303 19638303 C G CHODL Missense_Mutation p.S257C 0.16 deleterious(0) possibly_damaging(0.728) TCGA-XF-A9SW-01 21 47349907 47349907 C A PCBP3 Missense_Mutation p.P265H 0.15 deleterious(0) benign(0.005) TCGA-XF-A9SW-01 22 50717344 50717344 C G PLXNB2 Missense_Mutation p.D1496H 0.25 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SW-01 2 170463658 170463659 - GTA PPIG Intron 0.25 TCGA-XF-A9SW-01 2 48807843 48807843 C T STON1-GTF2A1L Missense_Mutation p.S24L 0.14 tolerated(0.11) benign(0.432) TCGA-XF-A9SW-01 2 84804389 84804389 T G DNAH6 Missense_Mutation p.F645V 0.15 tolerated(0.27) benign(0.011) TCGA-XF-A9SW-01 3 126722226 126722226 C T PLXNA1 Silent p.S477S 0.15 TCGA-XF-A9SW-01 3 158546813 158546813 C T MFSD1 3'UTR 0.23 TCGA-XF-A9SW-01 3 195955698 195955698 G A SLC51A Silent p.L180L 0.15 TCGA-XF-A9SW-01 3 196736560 196736560 C T MFI2 Missense_Mutation p.G485D 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A9SW-01 3 46945201 46945201 G C PTH1R 3'UTR 0.30 TCGA-XF-A9SW-01 3 49136324 49136324 G A QARS Silent p.F619F 0.14 TCGA-XF-A9SW-01 3 53856587 53856587 C T CHDH Silent p.V262V 0.10 TCGA-XF-A9SW-01 4 7840334 7840334 G A AFAP1 Missense_Mutation p.H215Y 0.14 deleterious(0) probably_damaging(1) TCGA-XF-A9SW-01 4 79258938 79258938 G C FRAS1 Missense_Mutation p.E797Q 0.14 benign(0.021) TCGA-XF-A9SW-01 5 145197525 145197525 A C PRELID2 Silent p.L112L 0.20 TCGA-XF-A9SW-01 5 151046004 151046004 G A SPARC Missense_Mutation p.R218W 0.23 deleterious(0) possibly_damaging(0.87) TCGA-XF-A9SW-01 5 179275018 179275018 A G C5orf45 Silent p.L59L 0.10 TCGA-XF-A9SW-01 6 136923007 136923007 G A MAP3K5 Silent p.N930N 0.19 TCGA-XF-A9SW-01 6 149826813 149826813 G A PPIL4 Missense_Mutation p.H419Y 0.19 tolerated(0.19) benign(0.044) TCGA-XF-A9SW-01 6 153043104 153043104 C G MYCT1 Missense_Mutation p.L142V 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9SW-01 6 34848064 34848064 A G TAF11 Splice_Site p.X136_splice 0.15 TCGA-XF-A9SW-01 6 44336195 44336195 C T SPATS1 Silent p.F218F 0.12 TCGA-XF-A9SW-01 6 76022150 76022150 G A FILIP1 Missense_Mutation p.P1133L 0.19 deleterious(0) probably_damaging(0.99) TCGA-XF-A9SW-01 7 121652378 121652378 C T PTPRZ1 Missense_Mutation p.S1093F 0.15 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-XF-A9SW-01 7 129104487 129104487 G A STRIP2 Missense_Mutation p.D562N 0.13 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SW-01 7 131189255 131189255 C G PODXL Missense_Mutation p.E498Q 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A9SW-01 7 139313770 139313770 C T HIPK2 Missense_Mutation p.E455K 0.20 deleterious(0) probably_damaging(0.987) TCGA-XF-A9SW-01 7 2279304 2279304 C A FTSJ2 Missense_Mutation p.G16V 0.20 tolerated(0.51) benign(0.045) TCGA-XF-A9SW-01 7 47968939 47968939 G A PKD1L1 Silent p.L308L 0.21 TCGA-XF-A9SW-01 7 55872965 55872965 C T SEPT14 Missense_Mutation p.E369K 0.25 tolerated(0.11) benign(0.309) TCGA-XF-A9SW-01 7 6210474 6210474 T A CYTH3 Missense_Mutation p.E233V 0.20 tolerated(0.1) probably_damaging(0.981) TCGA-XF-A9SW-01 7 82579315 82579315 G T PCLO Missense_Mutation p.P3530Q 0.19 unknown(0) TCGA-XF-A9SW-01 7 92765014 92765014 C G SAMD9L Missense_Mutation p.D91H 0.12 tolerated(0.09) benign(0.007) TCGA-XF-A9SW-01 8 39871117 39871117 G T IDO2 Silent p.L264L 0.14 TCGA-XF-A9SW-01 8 61533353 61533353 C A RAB2A 3'UTR 0.29 TCGA-XF-A9SW-01 8 95897354 95897354 C G CCNE2 Missense_Mutation p.D258H 0.47 deleterious(0) benign(0.071) TCGA-XF-A9SW-01 9 116038005 116038005 C T PRPF4 5'UTR 0.23 TCGA-XF-A9SW-01 9 116085093 116085093 C T WDR31 Missense_Mutation p.V190M 0.10 deleterious(0) benign(0.342) TCGA-XF-A9SW-01 9 127101893 127101893 C T NEK6 Silent p.N256N 0.10 TCGA-XF-A9SW-01 9 135945930 135945930 G A CEL Missense_Mutation p.D460N 0.19 deleterious(0.02) benign(0.366) TCGA-XF-A9SW-01 9 137801701 137801701 C T FCN1 Silent p.A308A 0.14 TCGA-XF-A9SW-01 X 102332665 102332665 G A NXF3 Silent p.I487I 0.33 TCGA-XF-A9SX-01 10 32573746 32573746 C T EPC1 Missense_Mutation p.D542N 0.07 tolerated(0.5) benign(0.003) TCGA-XF-A9SX-01 10 51584708 51584708 T A NCOA4 Nonsense_Mutation p.Y285* 0.23 TCGA-XF-A9SX-01 10 69926067 69926067 C G MYPN Missense_Mutation p.S539R 0.20 tolerated(0.13) benign(0.002) TCGA-XF-A9SX-01 10 70520777 70520777 G A CCAR1 Missense_Mutation p.R645Q 0.13 deleterious(0.01) possibly_damaging(0.757) TCGA-XF-A9SX-01 10 99426242 99426242 C T PI4K2A Nonsense_Mutation p.Q348* 0.45 TCGA-XF-A9SX-01 11 117280498 117280498 G A CEP164 Missense_Mutation p.D1305N 0.18 tolerated(0.5) benign(0.002) TCGA-XF-A9SX-01 11 119149324 119149324 G T CBL Missense_Mutation p.R444S 0.23 tolerated(0.34) benign(0.013) TCGA-XF-A9SX-01 11 134031683 134031683 T C NCAPD3 Missense_Mutation p.Y1226C 0.13 tolerated(0.06) possibly_damaging(0.5) TCGA-XF-A9SX-01 11 3756519 3756519 C T NUP98 Missense_Mutation p.A482T 0.28 deleterious(0.02) benign(0.044) TCGA-XF-A9SX-01 11 48285821 48285821 C T OR4X1 Nonsense_Mutation p.R137* 0.25 TCGA-XF-A9SX-01 11 48510909 48510909 G C OR4A47 Missense_Mutation p.D189H 0.19 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-XF-A9SX-01 11 49190810 49190810 C G FOLH1 Missense_Mutation p.E437Q 0.21 tolerated(0.09) possibly_damaging(0.896) TCGA-XF-A9SX-01 11 5345004 5345004 G A OR51B2 Missense_Mutation p.A175V 0.33 deleterious(0) probably_damaging(0.954) TCGA-XF-A9SX-01 11 55136233 55136233 A G OR4A15 Missense_Mutation p.T292A 0.23 deleterious_low_confidence(0.03) benign(0.318) TCGA-XF-A9SX-01 11 55370989 55370989 C T OR4C11 Silent p.L287L 0.29 TCGA-XF-A9SX-01 11 553969 553969 C T LRRC56 Missense_Mutation p.S441F 0.07 tolerated(0.28) benign(0.01) TCGA-XF-A9SX-01 11 55587849 55587849 C T OR5D18 Silent p.A248A 0.19 TCGA-XF-A9SX-01 11 57367474 57367474 C A SERPING1 Silent p.P58P 0.20 TCGA-XF-A9SX-01 11 6191556 6191556 T C OR52B2 Translation_Start_Site p.M1? 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-XF-A9SX-01 11 62782370 62782370 C T SLC22A8 Missense_Mutation p.V21I 0.26 tolerated(0.09) benign(0.003) TCGA-XF-A9SX-01 11 65349822 65349822 G A EHBP1L1 Nonsense_Mutation p.W560* 0.32 TCGA-XF-A9SX-01 11 8486364 8486364 G C STK33 Missense_Mutation p.I115M 0.19 tolerated(0.05) benign(0.254) TCGA-XF-A9SX-01 12 107371332 107371332 A G MTERFD3 3'UTR 0.20 TCGA-XF-A9SX-01 12 72175847 72175847 C - RAB21 Frame_Shift_Del p.I144Ffs*37 0.12 TCGA-XF-A9SX-01 13 27643445 27643449 ATGTA - USP12 Frame_Shift_Del p.Y362Pfs*47 0.22 TCGA-XF-A9SX-01 13 35770201 35770201 G A NBEA Missense_Mutation p.E1710K 0.07 deleterious_low_confidence(0.04) benign(0.097) TCGA-XF-A9SX-01 13 49030484 49030485 - G RB1 Frame_Shift_Ins 0.22 TCGA-XF-A9SX-01 14 20215691 20215691 C A OR4Q3 Nonsense_Mutation p.Y35* 0.08 TCGA-XF-A9SX-01 14 52793984 52793984 G T PTGER2 Missense_Mutation p.D297Y 0.10 deleterious(0.01) possibly_damaging(0.658) TCGA-XF-A9SX-01 14 52794223 52794223 G A PTGER2 3'UTR 0.19 TCGA-XF-A9SX-01 14 72090776 72090776 G T SIPA1L1 Silent p.L547L 0.12 TCGA-XF-A9SX-01 14 96784143 96784143 C T ATG2B Missense_Mutation p.E977K 0.15 tolerated(0.18) benign(0.344) TCGA-XF-A9SX-01 15 23931656 23931656 C A NDN Nonsense_Mutation p.E237* 0.12 TCGA-XF-A9SX-01 15 25467558 25467558 A G SNORD115-28 RNA 0.13 TCGA-XF-A9SX-01 15 33842376 33842376 C T RYR3 Silent p.N277N 0.16 TCGA-XF-A9SX-01 15 34519944 34519944 C T EMC4 Silent p.L84L 0.04 TCGA-XF-A9SX-01 15 43821380 43821380 C T MAP1A Missense_Mutation p.P2570L 0.25 probably_damaging(0.999) TCGA-XF-A9SX-01 15 45028846 45028846 G A TRIM69 5'UTR 0.26 TCGA-XF-A9SX-01 15 72700290 72700290 T C TMEM202 3'UTR 0.25 TCGA-XF-A9SX-01 15 75500328 75500328 G A C15orf39 Missense_Mutation p.V647M 0.25 deleterious(0.01) benign(0.002) TCGA-XF-A9SX-01 15 92987953 92987953 G T ST8SIA2 Silent p.R212R 0.08 TCGA-XF-A9SX-01 16 19498632 19498632 G T TMC5 Missense_Mutation p.A853S 0.46 tolerated(0.21) probably_damaging(0.977) TCGA-XF-A9SX-01 16 31122700 31122700 C T BCKDK Silent p.L309L 0.06 TCGA-XF-A9SX-01 16 58001046 58001046 C A CNGB1 Nonsense_Mutation p.E49* 0.42 TCGA-XF-A9SX-01 16 68397415 68397415 G A SMPD3 Missense_Mutation p.P565S 0.31 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SX-01 16 68849604 68849604 C T CDH1 Nonsense_Mutation p.Q503* 0.30 TCGA-XF-A9SX-01 16 75675610 75675610 C G KARS Missense_Mutation p.R53T 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-XF-A9SX-01 16 89620971 89620971 G T SPG7 Silent p.A727A 0.50 TCGA-XF-A9SX-01 17 35921619 35921619 T C SYNRG Silent p.K518K 0.34 TCGA-XF-A9SX-01 17 45697127 45697127 G A NPEPPS Missense_Mutation p.D862N 0.08 tolerated(0.14) possibly_damaging(0.568) TCGA-XF-A9SX-01 17 64049887 64049887 C T CEP112 Missense_Mutation p.M395I 0.19 deleterious(0.01) probably_damaging(0.981) TCGA-XF-A9SX-01 17 65850673 65850673 G A BPTF Missense_Mutation p.V411I 0.19 possibly_damaging(0.86) TCGA-XF-A9SX-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.32 deleterious(0.02) probably_damaging(0.922) TCGA-XF-A9SX-01 17 8197982 8197982 A G SLC25A35 Silent p.H48H 0.28 TCGA-XF-A9SX-01 19 1422377 1422377 G A DAZAP1 Missense_Mutation p.E149K 0.31 tolerated(0.08) unknown(0) TCGA-XF-A9SX-01 19 17881290 17881290 C A FCHO1 Missense_Mutation p.S131R 0.30 deleterious(0) benign(0.203) TCGA-XF-A9SX-01 19 36342422 36342422 G A NPHS1 Silent p.L71L 0.23 TCGA-XF-A9SX-01 19 53454538 53454538 G T ZNF816 Missense_Mutation p.L164M 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-XF-A9SX-01 19 54963336 54963336 G A LENG8 Silent p.E35E 0.06 TCGA-XF-A9SX-01 19 8161886 8161886 G A FBN3 Silent p.V1764V 0.24 TCGA-XF-A9SX-01 19 8808070 8808070 G A ACTL9 Silent p.L328L 0.25 TCGA-XF-A9SX-01 19 8808431 8808431 G A ACTL9 Silent p.P207P 0.09 TCGA-XF-A9SX-01 1 144931145 144931145 T A PDE4DIP Intron 0.12 TCGA-XF-A9SX-01 1 145558848 145558848 C A ANKRD35 Missense_Mutation p.P156H 0.23 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SX-01 1 152286488 152286488 G A FLG Missense_Mutation p.R292C 0.25 probably_damaging(0.994) TCGA-XF-A9SX-01 1 240371522 240371522 G A FMN2 Missense_Mutation p.G1137E 0.28 unknown(0) TCGA-XF-A9SX-01 1 247752390 247752390 C G OR2G2 Silent p.T243T 0.19 TCGA-XF-A9SX-01 1 6285087 6285087 T C ICMT 3'UTR 0.06 TCGA-XF-A9SX-01 1 70339209 70339209 A G LRRC7 Intron 0.16 TCGA-XF-A9SX-01 20 36641480 36641480 T C TTI1 Missense_Mutation p.M247V 0.38 deleterious(0.01) benign(0.027) TCGA-XF-A9SX-01 22 19188911 19188911 C T CLTCL1 Missense_Mutation p.V1232I 0.23 tolerated(0.17) probably_damaging(0.999) TCGA-XF-A9SX-01 22 41568617 41568617 G T EP300 Nonsense_Mutation p.E1523* 0.38 TCGA-XF-A9SX-01 2 110303744 110303744 C T SEPT10 Missense_Mutation p.R411K 0.07 tolerated(0.67) benign(0.006) TCGA-XF-A9SX-01 2 131883340 131883340 C T PLEKHB2 Missense_Mutation p.R18C 0.19 deleterious(0.02) probably_damaging(0.962) TCGA-XF-A9SX-01 2 152387603 152387603 A C NEB Missense_Mutation p.L7179V 0.21 possibly_damaging(0.844) TCGA-XF-A9SX-01 2 168098372 168098372 G C XIRP2 Missense_Mutation p.K376N 0.04 benign(0.278) TCGA-XF-A9SX-01 2 175939321 175939321 T C ATF2 3'UTR 0.19 TCGA-XF-A9SX-01 2 179611798 179611798 G - TTN Intron 0.20 TCGA-XF-A9SX-01 2 179721045 179721045 C A CCDC141 Missense_Mutation p.R935L 0.11 deleterious(0) probably_damaging(0.955) TCGA-XF-A9SX-01 2 220326779 220326779 G A SPEG Silent p.K872K 0.19 TCGA-XF-A9SX-01 2 220466132 220466132 C T STK11IP Silent p.F90F 0.14 TCGA-XF-A9SX-01 2 54096554 54096554 T C PSME4 Missense_Mutation p.K1741R 0.22 tolerated(0.33) benign(0.003) TCGA-XF-A9SX-01 2 79314043 79314043 C T REG1B Silent p.Q26Q 0.04 TCGA-XF-A9SX-01 3 100002547 100002547 G A TBC1D23 Missense_Mutation p.S123N 0.26 tolerated(0.34) benign(0.004) TCGA-XF-A9SX-01 3 10157349 10157349 G A BRK1 5'UTR 0.26 TCGA-XF-A9SX-01 3 185165701 185165701 C T MAP3K13 Missense_Mutation p.R326W 0.09 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SX-01 3 25470259 25470259 G T RARB Missense_Mutation p.G13W 0.19 tolerated_low_confidence(0.17) probably_damaging(0.996) TCGA-XF-A9SX-01 3 29781209 29781209 A T RBMS3 Splice_Site p.X134_splice 0.21 TCGA-XF-A9SX-01 3 49940714 49940714 C T MST1R Missense_Mutation p.G110E 0.24 tolerated(0.24) benign(0.046) TCGA-XF-A9SX-01 3 62467439 62467439 A T CADPS Silent p.T1044T 0.16 TCGA-XF-A9SX-01 3 77651410 77651410 C T ROBO2 Silent p.L984L 0.20 TCGA-XF-A9SX-01 3 78667141 78667141 T C ROBO1 Missense_Mutation p.H1309R 0.18 deleterious(0.02) probably_damaging(0.921) TCGA-XF-A9SX-01 4 104579486 104579486 C T TACR3 Nonsense_Mutation p.W208* 0.24 TCGA-XF-A9SX-01 4 13571644 13571644 C T BOD1L1 Silent p.A3049A 0.17 TCGA-XF-A9SX-01 4 140810446 140810446 C T MAML3 Intron 0.16 TCGA-XF-A9SX-01 4 155529730 155529730 T C FGG Missense_Mutation p.T247A 0.31 tolerated(0.31) benign(0.345) TCGA-XF-A9SX-01 4 17528449 17528449 T C CLRN2 Missense_Mutation p.V148A 0.28 tolerated(0.59) benign(0.003) TCGA-XF-A9SX-01 4 187549439 187549439 G A FAT1 Missense_Mutation p.P1560L 0.19 probably_damaging(1) TCGA-XF-A9SX-01 4 20620433 20620433 A C SLIT2 Missense_Mutation p.K1464T 0.08 tolerated(0.51) benign(0.003) TCGA-XF-A9SX-01 4 41983735 41983735 C T DCAF4L1 5'UTR 0.36 TCGA-XF-A9SX-01 4 72316166 72316166 G A SLC4A4 Missense_Mutation p.E372K 0.06 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SX-01 4 86916047 86916047 A G ARHGAP24 Missense_Mutation p.R414G 0.15 tolerated(0.14) benign(0.179) TCGA-XF-A9SX-01 4 89015741 89015741 C T ABCG2 Missense_Mutation p.C603Y 0.12 deleterious(0.04) benign(0.024) TCGA-XF-A9SX-01 4 91389426 91389426 G A CCSER1 Missense_Mutation p.A549T 0.09 tolerated(0.17) probably_damaging(0.977) TCGA-XF-A9SX-01 5 137271546 137271546 T A PKD2L2 Missense_Mutation p.S578T 0.14 tolerated(0.1) possibly_damaging(0.858) TCGA-XF-A9SX-01 5 140906009 140906009 T G DIAPH1 Missense_Mutation p.Q1098P 0.21 possibly_damaging(0.899) TCGA-XF-A9SX-01 5 149212436 149212436 C T PPARGC1B Missense_Mutation p.S267F 0.06 tolerated(0.05) possibly_damaging(0.815) TCGA-XF-A9SX-01 5 176018311 176018311 T C CDHR2 Missense_Mutation p.Y1214H 0.15 deleterious(0) probably_damaging(0.945) TCGA-XF-A9SX-01 5 21817074 21817074 C T CDH12 Missense_Mutation p.G328R 0.22 deleterious(0) probably_damaging(1) TCGA-XF-A9SX-01 5 33951759 33951759 A C SLC45A2 Nonsense_Mutation p.Y352* 0.34 TCGA-XF-A9SX-01 5 64769593 64769593 T C ADAMTS6 5'UTR 0.33 TCGA-XF-A9SX-01 6 10804121 10804121 A C MAK Nonsense_Mutation p.Y165* 0.17 TCGA-XF-A9SX-01 6 159420837 159420837 T C RSPH3 Missense_Mutation p.R58G 0.16 tolerated_low_confidence(1) benign(0) TCGA-XF-A9SX-01 6 169641890 169641890 G - THBS2 Frame_Shift_Del p.V287* 0.17 TCGA-XF-A9SX-01 6 32041568 32041568 C T RNA5SP206 3'Flank 0.22 TCGA-XF-A9SX-01 6 35378912 35378912 G C PPARD Missense_Mutation p.E16D 0.20 tolerated_low_confidence(0.28) unknown(0) TCGA-XF-A9SX-01 6 52696549 52696549 T - GSTA5 3'UTR 0.15 TCGA-XF-A9SX-01 6 56857233 56857233 G A BEND6 Missense_Mutation p.E60K 0.23 tolerated_low_confidence(0.21) benign(0.008) TCGA-XF-A9SX-01 7 117174351 117174351 G T CFTR Missense_Mutation p.V171F 0.18 deleterious(0) possibly_damaging(0.765) TCGA-XF-A9SX-01 7 143055951 143055951 G A FAM131B Silent p.S145S 0.31 TCGA-XF-A9SX-01 7 148496425 148496425 G A CUL1 Missense_Mutation p.G732D 0.12 tolerated(0.63) benign(0.001) TCGA-XF-A9SX-01 7 154379833 154379833 C T DPP6 Intron 0.41 TCGA-XF-A9SX-01 7 84629023 84629023 C T SEMA3D Missense_Mutation p.M689I 0.20 tolerated(0.19) benign(0.017) TCGA-XF-A9SX-01 8 123965761 123965761 G A ZHX2 Missense_Mutation p.E671K 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-XF-A9SX-01 8 134125667 134125667 A G TG Missense_Mutation p.Q2525R 0.15 tolerated(0.6) benign(0.012) TCGA-XF-A9SX-01 8 3087572 3087572 A T CSMD1 Silent p.P1445P 0.18 TCGA-XF-A9SX-01 8 3256958 3256958 A G CSMD1 Missense_Mutation p.I787T 0.17 benign(0.087) TCGA-XF-A9SX-01 8 42317497 42317497 G A SLC20A2 Missense_Mutation p.P177L 0.25 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SX-01 8 72958768 72958768 C G TRPA1 Missense_Mutation p.E681Q 0.19 tolerated(0.3) possibly_damaging(0.886) TCGA-XF-A9SX-01 9 71549941 71549941 T C PIP5K1B Missense_Mutation p.F446S 0.32 tolerated(0.2) benign(0.024) TCGA-XF-A9SX-01 X 11783730 11783730 C A MSL3 Silent p.S351S 0.18 TCGA-XF-A9SX-01 X 130678903 130678903 C T OR13H1 Missense_Mutation p.P286S 0.18 deleterious(0.02) probably_damaging(1) TCGA-XF-A9SX-01 X 14877338 14877338 A G FANCB Missense_Mutation p.F357S 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SX-01 X 149102008 149102008 G A CXorf40B Missense_Mutation p.P29S 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9SX-01 X 150349050 150349050 C T GPR50 Missense_Mutation p.A332V 0.19 deleterious(0.01) benign(0.355) TCGA-XF-A9SX-01 X 151283579 151283579 C A RP11-1007I13.4 RNA 0.16 TCGA-XF-A9SX-01 X 16711297 16711297 G A CTPS2 Silent p.R202R 0.17 TCGA-XF-A9SX-01 X 29959896 29959896 G C IL1RAPL1 Missense_Mutation p.E396Q 0.09 deleterious(0) possibly_damaging(0.703) TCGA-XF-A9SX-01 X 30269413 30269413 A G MAGEB1 Missense_Mutation p.Y268C 0.20 deleterious(0.01) possibly_damaging(0.87) TCGA-XF-A9SX-01 X 40450513 40450513 G A ATP6AP2 Missense_Mutation p.G66S 0.16 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SX-01 X 44037689 44037689 G A EFHC2 Missense_Mutation p.H625Y 0.32 deleterious(0) benign(0.209) TCGA-XF-A9SX-01 X 47426132 47426132 G A ARAF Missense_Mutation p.V218I 0.18 tolerated(0.11) benign(0.362) TCGA-XF-A9SX-01 X 53564649 53564649 C A HUWE1 Missense_Mutation p.R4002L 0.15 unknown(0) TCGA-XF-A9SX-01 X 72434069 72434069 C A NAP1L2 Missense_Mutation p.R87L 0.20 tolerated(0.34) benign(0.1) TCGA-XF-A9SY-01 10 101591826 101591826 C A ABCC2 Silent p.R1066R 0.15 TCGA-XF-A9SY-01 10 101611269 101611269 C A ABCC2 Missense_Mutation p.L1507I 0.06 deleterious(0) possibly_damaging(0.905) TCGA-XF-A9SY-01 10 105792002 105792002 G C COL17A1 Silent p.V1495V 0.18 TCGA-XF-A9SY-01 10 115344031 115344031 T C HABP2 Silent p.V454V 0.14 TCGA-XF-A9SY-01 10 115895667 115895667 T G C10orf118 Silent p.R499R 0.12 TCGA-XF-A9SY-01 10 12856259 12856259 C T CAMK1D Missense_Mutation p.A236V 0.11 deleterious(0) possibly_damaging(0.715) TCGA-XF-A9SY-01 10 129900873 129900873 G C MKI67 Missense_Mutation p.H3077Q 0.07 tolerated(0.54) benign(0.177) TCGA-XF-A9SY-01 10 129909975 129909975 G A MKI67 Nonsense_Mutation p.R732* 0.11 TCGA-XF-A9SY-01 10 13040395 13040395 C A CCDC3 Silent p.S164S 0.13 TCGA-XF-A9SY-01 10 13152414 13152414 G A OPTN Missense_Mutation p.E103K 0.13 deleterious(0.01) possibly_damaging(0.849) TCGA-XF-A9SY-01 10 134743185 134743185 C G TTC40 Intron 0.13 TCGA-XF-A9SY-01 10 32562144 32562144 C T EPC1 Missense_Mutation p.A604T 0.11 tolerated(0.39) possibly_damaging(0.687) TCGA-XF-A9SY-01 10 32573890 32573890 C A EPC1 Missense_Mutation p.V494F 0.06 tolerated(0.46) benign(0.013) TCGA-XF-A9SY-01 10 37490186 37490186 G C ANKRD30A Missense_Mutation p.Q878H 0.09 tolerated(0.11) benign(0.192) TCGA-XF-A9SY-01 10 5788318 5788318 C A FAM208B Silent p.T978T 0.10 TCGA-XF-A9SY-01 10 70179627 70179627 T C DNA2 Missense_Mutation p.E993G 0.11 deleterious(0.01) benign(0.223) TCGA-XF-A9SY-01 10 73992771 73992771 C G ANAPC16 Missense_Mutation p.A77G 0.18 deleterious_low_confidence(0.02) benign(0.059) TCGA-XF-A9SY-01 10 74701084 74701084 C A PLA2G12B Missense_Mutation p.L103F 0.12 deleterious(0.01) probably_damaging(0.914) TCGA-XF-A9SY-01 10 76993840 76993840 G C COMTD1 Missense_Mutation p.F260L 0.06 tolerated(0.37) benign(0.251) TCGA-XF-A9SY-01 10 8006521 8006521 G A TAF3 Missense_Mutation p.E350K 0.14 deleterious_low_confidence(0) benign(0.215) TCGA-XF-A9SY-01 10 88994220 88994220 C T NUTM2A Missense_Mutation p.H798Y 0.13 tolerated(1) benign(0.001) TCGA-XF-A9SY-01 10 88994223 88994223 C T NUTM2A Nonsense_Mutation p.Q799* 0.13 TCGA-XF-A9SY-01 10 98744615 98744615 G C C10orf12 Missense_Mutation p.K1156N 0.11 deleterious(0) probably_damaging(0.988) TCGA-XF-A9SY-01 11 101937236 101937236 G A C11orf70 Missense_Mutation p.E97K 0.09 tolerated(0.09) benign(0.039) TCGA-XF-A9SY-01 11 118771569 118771569 C T BCL9L Missense_Mutation p.M961I 0.09 benign(0.218) TCGA-XF-A9SY-01 11 119061132 119061132 C G CCDC153 Silent p.L170L 0.16 TCGA-XF-A9SY-01 11 120317777 120317777 C A ARHGEF12 Silent p.A524A 0.13 TCGA-XF-A9SY-01 11 121391505 121391505 G T SORL1 Nonsense_Mutation p.E451* 0.28 TCGA-XF-A9SY-01 11 12247760 12247760 C T MICAL2 Silent p.N577N 0.06 TCGA-XF-A9SY-01 11 124120565 124120565 T C OR8G1 Missense_Mutation p.L48P 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-A9SY-01 11 124179880 124179880 C T OR8D1 Silent p.K261K 0.30 TCGA-XF-A9SY-01 11 1272927 1272927 C G MUC5B Missense_Mutation p.F4939L 0.08 unknown(0) TCGA-XF-A9SY-01 11 14280960 14280960 G A RP11-21L19.1 3'Flank 0.23 TCGA-XF-A9SY-01 11 17544788 17544788 G A USH1C Silent p.R282R 0.09 TCGA-XF-A9SY-01 11 1972204 1972204 C T MRPL23 Silent p.P31P 0.60 TCGA-XF-A9SY-01 11 20065659 20065659 G C NAV2 Missense_Mutation p.D1037H 0.08 deleterious(0.05) probably_damaging(0.999) TCGA-XF-A9SY-01 11 3721910 3721910 C T NUP98 Silent p.L1224L 0.25 TCGA-XF-A9SY-01 11 4142986 4142986 G C RRM1 Missense_Mutation p.E343D 0.09 deleterious_low_confidence(0) benign(0.136) TCGA-XF-A9SY-01 11 418916 418916 C G ANO9 Missense_Mutation p.E670Q 0.10 tolerated(0.26) benign(0.054) TCGA-XF-A9SY-01 11 418925 418925 C T ANO9 Missense_Mutation p.D667N 0.09 tolerated(0.56) benign(0.006) TCGA-XF-A9SY-01 11 419601 419601 C T ANO9 Missense_Mutation p.E639K 0.07 tolerated(0.32) benign(0.018) TCGA-XF-A9SY-01 11 4566768 4566768 C A OR52M1 Silent p.I116I 0.06 TCGA-XF-A9SY-01 11 47808015 47808015 T C NUP160 Missense_Mutation p.K1280E 0.26 deleterious(0.02) benign(0.063) TCGA-XF-A9SY-01 11 5221635 5221635 C G OR51V1 Missense_Mutation p.R99P 0.28 tolerated(0.08) possibly_damaging(0.657) TCGA-XF-A9SY-01 11 55339669 55339669 G C OR4C16 Missense_Mutation p.K22N 0.12 deleterious(0) possibly_damaging(0.833) TCGA-XF-A9SY-01 11 55681240 55681240 C A OR5W2 Missense_Mutation p.M273I 0.15 tolerated(0.35) benign(0.012) TCGA-XF-A9SY-01 11 55681365 55681365 C T OR5W2 Missense_Mutation p.E232K 0.09 tolerated(0.1) benign(0.095) TCGA-XF-A9SY-01 11 55735372 55735372 C A OR10AG1 Missense_Mutation p.V190F 0.26 deleterious(0.05) benign(0.262) TCGA-XF-A9SY-01 11 56756999 56756999 G T OR5AK2 Missense_Mutation p.G204V 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9SY-01 11 58170132 58170132 C T OR5B3 Missense_Mutation p.G251R 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-XF-A9SY-01 11 59344368 59344368 C A OSBP Nonsense_Mutation p.E731* 0.17 TCGA-XF-A9SY-01 11 6129507 6129507 A T OR56B4 Missense_Mutation p.I167L 0.33 tolerated(0.22) benign(0.006) TCGA-XF-A9SY-01 11 61647624 61647624 C A FADS3 Splice_Site p.X72_splice 0.24 TCGA-XF-A9SY-01 11 62289953 62289953 C A AHNAK Missense_Mutation p.G3979V 0.30 probably_damaging(1) TCGA-XF-A9SY-01 11 62435193 62435193 T G C11orf48 Silent p.R114R 0.16 TCGA-XF-A9SY-01 11 62476275 62476275 C G GNG3 Silent p.L75L 0.11 TCGA-XF-A9SY-01 11 63487795 63487795 G A RTN3 Silent p.E607E 0.12 TCGA-XF-A9SY-01 11 66050541 66050541 C G CNIH2 Missense_Mutation p.F78L 0.12 tolerated(0.38) possibly_damaging(0.524) TCGA-XF-A9SY-01 11 6891233 6891233 G T OR10A2 Missense_Mutation p.G83V 0.39 deleterious(0) possibly_damaging(0.703) TCGA-XF-A9SY-01 11 73388981 73388981 G C RAB6A Missense_Mutation p.Q197E 0.23 tolerated(0.57) benign(0.038) TCGA-XF-A9SY-01 11 77412518 77412518 C G RSF1 Missense_Mutation p.E586Q 0.09 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-XF-A9SY-01 11 804370 804370 C A PIDD Missense_Mutation p.G7W 0.32 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-XF-A9SY-01 11 8752224 8752224 C G ST5 Missense_Mutation p.G205R 0.31 tolerated(0.15) benign(0.413) TCGA-XF-A9SY-01 12 105519872 105519872 C T KIAA1033 Missense_Mutation p.R293W 0.20 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SY-01 12 110206991 110206991 C T FAM222A Silent p.P419P 0.21 TCGA-XF-A9SY-01 12 110600783 110600783 G C IFT81 Missense_Mutation p.E367D 0.09 tolerated(0.41) benign(0.014) TCGA-XF-A9SY-01 12 110600850 110600850 G A IFT81 Missense_Mutation p.E390K 0.12 tolerated(0.11) benign(0.037) TCGA-XF-A9SY-01 12 110891654 110891654 C A GPN3 Missense_Mutation p.R268L 0.16 deleterious(0.03) possibly_damaging(0.793) TCGA-XF-A9SY-01 12 112374514 112374514 G A TMEM116 Silent p.L190L 0.09 TCGA-XF-A9SY-01 12 113745598 113745598 C A SLC8B1 Missense_Mutation p.A437S 0.19 deleterious(0) possibly_damaging(0.892) TCGA-XF-A9SY-01 12 124130101 124130101 C G GTF2H3 Missense_Mutation p.Q65E 0.14 tolerated(0.36) benign(0.002) TCGA-XF-A9SY-01 12 22061131 22061131 C A ABCC9 Silent p.V445V 0.20 TCGA-XF-A9SY-01 12 40677743 40677743 G A LRRK2 Missense_Mutation p.D770N 0.27 deleterious(0.02) probably_damaging(0.927) TCGA-XF-A9SY-01 12 41337455 41337455 G C CNTN1 Missense_Mutation p.G479A 0.10 tolerated(0.14) benign(0.023) TCGA-XF-A9SY-01 12 42768741 42768741 G A PPHLN1 Missense_Mutation p.D126N 0.32 tolerated(0.07) benign(0.071) TCGA-XF-A9SY-01 12 49230396 49230396 G A DDX23 Silent p.L398L 0.10 TCGA-XF-A9SY-01 12 49952692 49952692 G C MCRS1 Missense_Mutation p.I425M 0.09 tolerated(0.07) benign(0.186) TCGA-XF-A9SY-01 12 50191061 50191061 C G NCKAP5L Silent p.L194L 0.20 TCGA-XF-A9SY-01 12 50616023 50616023 G A LIMA1 Silent p.L137L 0.11 TCGA-XF-A9SY-01 12 53471023 53471023 C T SPRYD3 Missense_Mutation p.D16N 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.631) TCGA-XF-A9SY-01 12 53471027 53471027 C T SPRYD3 Silent p.K14K 0.08 TCGA-XF-A9SY-01 12 53825187 53825187 G A AMHR2 Missense_Mutation p.C551Y 0.21 deleterious_low_confidence(0.01) benign(0.384) TCGA-XF-A9SY-01 12 54379266 54379266 C A HOXC10 Missense_Mutation p.Q75K 0.09 deleterious(0.01) benign(0.177) TCGA-XF-A9SY-01 12 54969376 54969376 C G PDE1B Silent p.L409L 0.06 TCGA-XF-A9SY-01 12 55886809 55886809 C A OR6C68 Nonsense_Mutation p.Y216* 0.28 TCGA-XF-A9SY-01 12 57175932 57175932 C G HSD17B6 Missense_Mutation p.S163C 0.16 deleterious(0.01) benign(0.236) TCGA-XF-A9SY-01 12 57870388 57870388 C T ARHGAP9 Missense_Mutation p.G337E 0.30 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 12 58014157 58014157 C A SLC26A10 Missense_Mutation p.P52T 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 12 58174199 58174199 G A METTL21B Missense_Mutation p.D151N 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 12 6666446 6666446 C T NOP2 Missense_Mutation p.A751T 0.29 tolerated_low_confidence(0.07) benign(0.031) TCGA-XF-A9SY-01 12 75683421 75683421 G T CAPS2 Missense_Mutation p.H478N 0.08 tolerated(0.08) benign(0.049) TCGA-XF-A9SY-01 12 85279839 85279839 G C SLC6A15 Missense_Mutation p.L100V 0.10 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SY-01 12 9004433 9004433 G C A2ML1 Missense_Mutation p.W763S 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 12 99056532 99056532 G T APAF1 Missense_Mutation p.M301I 0.17 tolerated(0.14) benign(0.004) TCGA-XF-A9SY-01 12 99837571 99837571 T A ANKS1B Silent p.V485V 0.22 TCGA-XF-A9SY-01 12 9994985 9994985 G C KLRF1 Missense_Mutation p.L181F 0.09 tolerated(0.06) benign(0.158) TCGA-XF-A9SY-01 13 27256894 27256894 G T WASF3 Silent p.T378T 0.09 TCGA-XF-A9SY-01 13 37011791 37011791 C T CCNA1 Missense_Mutation p.S108F 0.08 deleterious(0.01) possibly_damaging(0.868) TCGA-XF-A9SY-01 13 39266035 39266035 C G FREM2 Silent p.V1518V 0.06 TCGA-XF-A9SY-01 13 39450252 39450252 C A FREM2 Missense_Mutation p.P2792Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SY-01 13 39613332 39613332 G T NHLRC3 Silent p.L48L 0.05 TCGA-XF-A9SY-01 13 43652820 43652820 G T DNAJC15 Missense_Mutation p.V103L 0.14 tolerated(0.08) benign(0.135) TCGA-XF-A9SY-01 13 45975264 45975264 G A SLC25A30 Missense_Mutation p.L190F 0.13 deleterious(0.04) benign(0.309) TCGA-XF-A9SY-01 13 47303042 47303042 G C LRCH1 Missense_Mutation p.G644R 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 13 73636244 73636244 C A KLF5 Missense_Mutation p.F169L 0.08 tolerated(0.13) possibly_damaging(0.827) TCGA-XF-A9SY-01 13 96246271 96246271 G C DZIP1 Missense_Mutation p.S536C 0.07 deleterious(0.02) benign(0.033) TCGA-XF-A9SY-01 14 100728701 100728701 C G YY1 Nonsense_Mutation p.S247* 0.05 TCGA-XF-A9SY-01 14 102675281 102675281 G C WDR20 Missense_Mutation p.M289I 0.12 deleterious(0.02) benign(0.276) TCGA-XF-A9SY-01 14 102675932 102675932 G A WDR20 Silent p.E506E 0.07 TCGA-XF-A9SY-01 14 106173485 106173485 G T IGHA1 3'UTR 0.09 TCGA-XF-A9SY-01 14 20216220 20216220 T A OR4Q3 Missense_Mutation p.F212I 0.21 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SY-01 14 21543089 21543089 G T ARHGEF40 Silent p.L400L 0.12 TCGA-XF-A9SY-01 14 21993304 21993304 T C SALL2 Silent p.L186L 0.15 TCGA-XF-A9SY-01 14 24601573 24601573 G T FITM1 Silent p.R140R 0.10 TCGA-XF-A9SY-01 14 24975399 24975399 C A CMA1 Silent p.R145R 0.08 TCGA-XF-A9SY-01 14 25443936 25443936 T A STXBP6 Missense_Mutation p.K30M 0.15 deleterious(0.04) possibly_damaging(0.751) TCGA-XF-A9SY-01 14 31576793 31576793 G A HECTD1 Missense_Mutation p.P2200S 0.09 tolerated(0.22) probably_damaging(0.995) TCGA-XF-A9SY-01 14 35276671 35276671 C T BAZ1A Missense_Mutation p.V238I 0.15 tolerated(0.85) benign(0) TCGA-XF-A9SY-01 14 42355984 42355984 A T LRFN5 Missense_Mutation p.R52S 0.08 deleterious(0.05) benign(0.341) TCGA-XF-A9SY-01 14 44975854 44975854 G C FSCB Missense_Mutation p.Q113E 0.07 deleterious(0.02) possibly_damaging(0.631) TCGA-XF-A9SY-01 14 45644716 45644716 C G FANCM Missense_Mutation p.P920R 0.07 tolerated(0.06) possibly_damaging(0.447) TCGA-XF-A9SY-01 14 50085452 50085452 C A RPL36AL 3'UTR 0.09 TCGA-XF-A9SY-01 14 50611890 50611890 C G SOS2 Missense_Mutation p.E889Q 0.09 tolerated(0.59) benign(0.023) TCGA-XF-A9SY-01 14 51561050 51561050 G T TRIM9 Missense_Mutation p.P203H 0.09 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 14 55518511 55518511 G C MAPK1IP1L 5'UTR 0.08 TCGA-XF-A9SY-01 14 62229256 62229256 C T SNAPC1 Silent p.F26F 0.10 TCGA-XF-A9SY-01 14 64596563 64596563 G A SYNE2 Missense_Mutation p.E4695K 0.11 probably_damaging(0.928) TCGA-XF-A9SY-01 14 74961577 74961577 G A ISCA2 Silent p.L113L 0.06 TCGA-XF-A9SY-01 14 81251718 81251718 C G CEP128 Missense_Mutation p.E578Q 0.11 tolerated(0.16) probably_damaging(0.922) TCGA-XF-A9SY-01 14 89123766 89123766 C A EML5 Nonsense_Mutation p.G1320* 0.14 TCGA-XF-A9SY-01 14 96909099 96909099 A T AK7 Silent p.P241P 0.07 TCGA-XF-A9SY-01 15 44028362 44028362 C T RNU6-354P 5'Flank 0.06 TCGA-XF-A9SY-01 15 52257978 52257978 G T LEO1 Nonsense_Mutation p.S261* 0.07 TCGA-XF-A9SY-01 15 52258023 52258023 G C LEO1 Missense_Mutation p.S246C 0.08 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-XF-A9SY-01 15 52258125 52258125 G A LEO1 Missense_Mutation p.S212F 0.08 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-XF-A9SY-01 15 54542588 54542588 G A UNC13C Missense_Mutation p.G1132R 0.14 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-XF-A9SY-01 15 65297264 65297264 T A MTFMT Missense_Mutation p.L301F 0.17 tolerated(0.13) benign(0.049) TCGA-XF-A9SY-01 15 74315653 74315653 G A PML Missense_Mutation p.E363K 0.07 tolerated(0.1) benign(0.072) TCGA-XF-A9SY-01 15 77328221 77328221 G A PSTPIP1 Missense_Mutation p.G355E 0.25 tolerated(0.48) benign(0.001) TCGA-XF-A9SY-01 15 83334319 83334319 G C AP3B2 Missense_Mutation p.H621D 0.09 tolerated(0.06) benign(0.014) TCGA-XF-A9SY-01 15 83791578 83791578 C G TM6SF1 Missense_Mutation p.A184G 0.16 tolerated(0.09) possibly_damaging(0.905) TCGA-XF-A9SY-01 15 95022218 95022218 C G MCTP2 Silent p.L864L 0.19 TCGA-XF-A9SY-01 15 99669683 99669683 C T SYNM Missense_Mutation p.A372V 0.14 tolerated(0.11) benign(0.033) TCGA-XF-A9SY-01 16 17221624 17221624 C A XYLT1 Missense_Mutation p.A708S 0.10 tolerated(0.08) probably_damaging(0.988) TCGA-XF-A9SY-01 16 20359621 20359621 C T UMOD Silent p.E299E 0.17 TCGA-XF-A9SY-01 16 28187234 28187234 A T XPO6 Missense_Mutation p.F130L 0.07 tolerated(0.15) possibly_damaging(0.516) TCGA-XF-A9SY-01 16 29675036 29675036 C A SPN 5'UTR 0.06 TCGA-XF-A9SY-01 16 30455767 30455767 G A SEPHS2 Missense_Mutation p.R428C 0.12 benign(0.032) TCGA-XF-A9SY-01 16 48221148 48221148 C G ABCC11 Missense_Mutation p.G966A 0.12 tolerated(0.27) benign(0.029) TCGA-XF-A9SY-01 16 51175917 51175917 T G SALL1 Missense_Mutation p.L72F 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 16 55719100 55719100 C T SLC6A2 Silent p.I230I 0.15 TCGA-XF-A9SY-01 16 57695753 57695753 G T GPR56 Silent p.V609V 0.10 TCGA-XF-A9SY-01 16 65345320 65345320 C T LINC00922 RNA 0.10 TCGA-XF-A9SY-01 16 67860069 67860069 G T TSNAXIP1 Missense_Mutation p.G333C 0.30 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 16 70796924 70796924 C T VAC14 Missense_Mutation p.E389K 0.14 tolerated(0.11) benign(0.031) TCGA-XF-A9SY-01 16 76587765 76587765 C A RP11-58C22.1 Missense_Mutation p.L40I 0.20 tolerated(0.24) benign(0.005) TCGA-XF-A9SY-01 16 77396028 77396028 C A ADAMTS18 Missense_Mutation p.W397L 0.07 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SY-01 16 84476142 84476142 C A ATP2C2 Silent p.V446V 0.06 TCGA-XF-A9SY-01 16 85813424 85813424 G T EMC8 Missense_Mutation p.L175M 0.12 tolerated(0.05) probably_damaging(0.957) TCGA-XF-A9SY-01 16 89696854 89696854 C G DPEP1 Silent p.A12A 0.24 TCGA-XF-A9SY-01 16 90021603 90021603 G C DEF8 Missense_Mutation p.E112Q 0.20 deleterious(0.04) possibly_damaging(0.467) TCGA-XF-A9SY-01 16 90025431 90025431 G A DEF8 Missense_Mutation p.E189K 0.07 deleterious(0.04) possibly_damaging(0.691) TCGA-XF-A9SY-01 17 20108964 20108964 C A SPECC1 Silent p.A534A 0.08 TCGA-XF-A9SY-01 17 27049536 27049536 C T RPL23A Intron 0.11 TCGA-XF-A9SY-01 17 27425197 27425197 C G MYO18A Missense_Mutation p.E1306Q 0.10 tolerated(0.05) probably_damaging(0.912) TCGA-XF-A9SY-01 17 29559841 29559841 C A NF1 Silent p.V1146V 0.21 TCGA-XF-A9SY-01 17 38209884 38209884 G T MED24 5'UTR 0.15 TCGA-XF-A9SY-01 17 39296627 39296627 G T KRTAP4-6 Missense_Mutation p.P38H 0.16 deleterious(0) unknown(0) TCGA-XF-A9SY-01 17 39740552 39740552 C A KRT14 Missense_Mutation p.S241I 0.15 deleterious(0) possibly_damaging(0.885) TCGA-XF-A9SY-01 17 39777119 39777119 C G KRT17 Missense_Mutation p.E325Q 0.09 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SY-01 17 40255715 40255715 G C DHX58 Silent p.L555L 0.13 TCGA-XF-A9SY-01 17 40256928 40256928 C G DHX58 Silent p.R473R 0.24 TCGA-XF-A9SY-01 17 44953783 44953783 G T WNT9B Missense_Mutation p.R258L 0.19 deleterious(0.05) benign(0.191) TCGA-XF-A9SY-01 17 45209694 45209694 C A CDC27 Missense_Mutation p.A660S 0.11 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SY-01 17 4621908 4621908 G A ARRB2 Silent p.V257V 0.09 TCGA-XF-A9SY-01 17 4621972 4621972 G A ARRB2 Missense_Mutation p.E279K 0.10 deleterious(0) probably_damaging(0.991) TCGA-XF-A9SY-01 17 47394286 47394286 G C ZNF652 Missense_Mutation p.H268D 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-XF-A9SY-01 17 47778726 47778726 G A SLC35B1 3'UTR 0.14 TCGA-XF-A9SY-01 17 4841113 4841113 C A SLC25A11 Missense_Mutation p.G290C 0.12 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SY-01 17 53345295 53345295 G T HLF Missense_Mutation p.S100I 0.14 deleterious(0.03) possibly_damaging(0.878) TCGA-XF-A9SY-01 17 56621550 56621550 G A C17orf47 5'UTR 0.16 TCGA-XF-A9SY-01 17 57335173 57335173 A T GDPD1 Missense_Mutation p.Y183F 0.21 tolerated(0.08) benign(0.167) TCGA-XF-A9SY-01 17 57759678 57759678 G T CLTC Missense_Mutation p.K1163N 0.30 tolerated(0.07) benign(0.087) TCGA-XF-A9SY-01 17 57952060 57952060 G T TUBD1 Missense_Mutation p.D258E 0.15 tolerated(0.75) benign(0.008) TCGA-XF-A9SY-01 17 58121446 58121446 C A HEATR6 Silent p.V1008V 0.05 TCGA-XF-A9SY-01 17 61684733 61684733 T C TACO1 Missense_Mutation p.V201A 0.12 deleterious(0) benign(0.403) TCGA-XF-A9SY-01 17 62223730 62223730 C T TEX2 3'Flank 0.07 TCGA-XF-A9SY-01 17 64212966 64212966 C A APOH Missense_Mutation p.G242C 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 17 65214778 65214778 C A HELZ Missense_Mutation p.C48F 0.22 deleterious_low_confidence(0) benign(0.304) TCGA-XF-A9SY-01 17 66899531 66899531 A C ABCA8 Silent p.G796G 0.13 TCGA-XF-A9SY-01 17 7130413 7130413 C T DVL2 Silent p.E513E 0.09 TCGA-XF-A9SY-01 17 7150433 7150433 C A CTDNEP1 Missense_Mutation p.V80F 0.13 tolerated(0.12) possibly_damaging(0.703) TCGA-XF-A9SY-01 17 7339105 7339105 C T TMEM102 Intron 0.19 TCGA-XF-A9SY-01 17 73727424 73727424 C T ITGB4 Missense_Mutation p.S397F 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 17 73727425 73727425 C G ITGB4 Silent p.S397S 0.16 TCGA-XF-A9SY-01 17 7404869 7404869 G A POLR2A Missense_Mutation p.E724K 0.08 benign(0.395) TCGA-XF-A9SY-01 17 75187290 75187290 G T SEC14L1 Missense_Mutation p.V81F 0.10 deleterious(0.01) benign(0.299) TCGA-XF-A9SY-01 17 7578493 7578493 C T TP53 Nonsense_Mutation p.W146* 0.20 TCGA-XF-A9SY-01 17 76419975 76419975 G T DNAH17 3'UTR 0.08 TCGA-XF-A9SY-01 17 7762002 7762002 C T CYB5D1 Nonsense_Mutation p.Q106* 0.13 TCGA-XF-A9SY-01 17 9683242 9683242 A G DHRS7C Silent p.N127N 0.32 TCGA-XF-A9SY-01 18 14543047 14543047 G A POTEC Silent p.P33P 0.09 TCGA-XF-A9SY-01 18 20586357 20586357 G A RBBP8 Silent p.Q773Q 0.06 TCGA-XF-A9SY-01 18 28983466 28983466 G A DSG4 Missense_Mutation p.R502K 0.07 tolerated(0.34) benign(0.006) TCGA-XF-A9SY-01 18 55364879 55364879 G C ATP8B1 Silent p.L223L 0.06 TCGA-XF-A9SY-01 18 7040173 7040173 G T LAMA1 Missense_Mutation p.Q442K 0.08 tolerated(0.16) benign(0.02) TCGA-XF-A9SY-01 18 9886691 9886691 C A TXNDC2 Missense_Mutation p.T72K 0.13 tolerated(0.09) probably_damaging(0.94) TCGA-XF-A9SY-01 19 10475559 10475559 C - TYK2 Frame_Shift_Del p.V393Sfs*13 0.11 TCGA-XF-A9SY-01 19 10883304 10883304 G A DNM2 Missense_Mutation p.V129M 0.15 deleterious(0.01) possibly_damaging(0.785) TCGA-XF-A9SY-01 19 11834016 11834016 C A ZNF823 Silent p.S111S 0.09 TCGA-XF-A9SY-01 19 13080516 13080516 C A DAND5 Missense_Mutation p.S14R 0.10 deleterious(0.01) benign(0.021) TCGA-XF-A9SY-01 19 13080545 13080545 C A DAND5 Missense_Mutation p.P24H 0.12 deleterious(0) probably_damaging(0.963) TCGA-XF-A9SY-01 19 14208663 14208663 C A PRKACA Silent p.L153L 0.12 TCGA-XF-A9SY-01 19 15661506 15661506 G T CYP4F22 Missense_Mutation p.D453Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 19 17653056 17653056 C G FAM129C Missense_Mutation p.L459V 0.20 tolerated(0.42) possibly_damaging(0.487) TCGA-XF-A9SY-01 19 19990898 19990898 G A ZNF253 Missense_Mutation p.E57K 0.10 tolerated(0.05) benign(0.13) TCGA-XF-A9SY-01 19 22154795 22154795 G C ZNF208 Nonsense_Mutation p.S1014* 0.16 TCGA-XF-A9SY-01 19 34942884 34942884 A C UBA2 Splice_Site p.X291_splice 0.24 TCGA-XF-A9SY-01 19 35850582 35850582 C T FFAR3 Missense_Mutation p.L264F 0.14 tolerated(0.05) benign(0.346) TCGA-XF-A9SY-01 19 38689051 38689051 C G SIPA1L3 Silent p.L1621L 0.11 TCGA-XF-A9SY-01 19 38817243 38817243 C G KCNK6 Nonsense_Mutation p.Y111* 0.06 TCGA-XF-A9SY-01 19 38993575 38993575 C T RYR1 Missense_Mutation p.P2631S 0.11 benign(0.066) TCGA-XF-A9SY-01 19 39691414 39691414 C G NCCRP1 3'UTR 0.13 TCGA-XF-A9SY-01 19 40398419 40398419 G A FCGBP Missense_Mutation p.S2183L 0.08 possibly_damaging(0.637) TCGA-XF-A9SY-01 19 42375477 42375477 A G RPS19 3'UTR 0.10 TCGA-XF-A9SY-01 19 43233345 43233345 G A PSG3 Silent p.L391L 0.11 TCGA-XF-A9SY-01 19 44127515 44127515 G T CADM4 Missense_Mutation p.D378E 0.06 tolerated(0.17) benign(0.019) TCGA-XF-A9SY-01 19 44536063 44536063 A G ZNF222 Missense_Mutation p.D119G 0.21 deleterious(0.02) possibly_damaging(0.856) TCGA-XF-A9SY-01 19 4651975 4651975 G A TNFAIP8L1 Missense_Mutation p.D32N 0.18 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SY-01 19 4651999 4651999 G A TNFAIP8L1 Missense_Mutation p.D40N 0.19 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SY-01 19 4652055 4652055 G T TNFAIP8L1 Missense_Mutation p.K58N 0.29 deleterious(0) benign(0.31) TCGA-XF-A9SY-01 19 4652064 4652064 G C TNFAIP8L1 Missense_Mutation p.K61N 0.36 deleterious(0) possibly_damaging(0.855) TCGA-XF-A9SY-01 19 46914756 46914756 C A CCDC8 Missense_Mutation p.A438S 0.11 probably_damaging(0.958) TCGA-XF-A9SY-01 19 47844579 47844579 C T C5AR2 Silent p.L175L 0.17 TCGA-XF-A9SY-01 19 49513131 49513131 C A RUVBL2 Silent p.V187V 0.11 TCGA-XF-A9SY-01 19 52443932 52443932 G A ZNF613 Missense_Mutation p.E69K 0.19 tolerated(0.11) benign(0.221) TCGA-XF-A9SY-01 19 53856112 53856112 C T ZNF845 Silent p.F728F 0.09 TCGA-XF-A9SY-01 19 54251917 54251917 G A MIR521-1 RNA 0.04 TCGA-XF-A9SY-01 19 54754719 54754719 C A LILRB5 Missense_Mutation p.E569D 0.20 tolerated(0.11) possibly_damaging(0.516) TCGA-XF-A9SY-01 19 55144176 55144176 C A LILRB1 Nonsense_Mutation p.S308* 0.22 TCGA-XF-A9SY-01 19 55670711 55670711 C A DNAAF3 Nonsense_Mutation p.E516* 0.25 TCGA-XF-A9SY-01 19 57795979 57795979 G A ZNF460 Missense_Mutation p.D31N 0.15 tolerated(0.06) probably_damaging(0.969) TCGA-XF-A9SY-01 19 57867966 57867966 G A ZNF304 Missense_Mutation p.M243I 0.11 tolerated(0.36) benign(0) TCGA-XF-A9SY-01 19 58017833 58017833 C A ZNF773 Missense_Mutation p.P124T 0.22 tolerated(0.16) benign(0.11) TCGA-XF-A9SY-01 19 6926514 6926514 C T EMR1 Silent p.I708I 0.18 TCGA-XF-A9SY-01 19 9406818 9406818 C A ZNF699 Missense_Mutation p.C421F 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 19 9578093 9578093 G T ZNF560 Missense_Mutation p.H510Q 0.24 deleterious(0) possibly_damaging(0.749) TCGA-XF-A9SY-01 1 10068239 10068239 T C RBP7 Silent p.V87V 0.07 TCGA-XF-A9SY-01 1 107867484 107867484 T C NTNG1 Missense_Mutation p.V276A 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-XF-A9SY-01 1 109363181 109363181 C A AKNAD1 Missense_Mutation p.E745D 0.12 tolerated(0.11) benign(0.011) TCGA-XF-A9SY-01 1 109964526 109964526 C T PSMA5 Missense_Mutation p.E18K 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 1 110151338 110151338 C T GNAT2 Missense_Mutation p.V126I 0.12 tolerated(0.33) benign(0.001) TCGA-XF-A9SY-01 1 110301186 110301186 C T EPS8L3 Silent p.G188G 0.11 TCGA-XF-A9SY-01 1 111773888 111773888 A G CHI3L2 Missense_Mutation p.I101V 0.10 tolerated(1) benign(0.007) TCGA-XF-A9SY-01 1 111773891 111773891 G C CHI3L2 Missense_Mutation p.G102R 0.05 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SY-01 1 11333522 11333522 C A UBIAD1 5'UTR 0.30 TCGA-XF-A9SY-01 1 114443759 114443759 C A AP4B1 Intron 0.17 TCGA-XF-A9SY-01 1 118166382 118166382 G A FAM46C Missense_Mutation p.E298K 0.16 tolerated(0.07) benign(0.001) TCGA-XF-A9SY-01 1 145587764 145587764 G A NUDT17 Silent p.L184L 0.21 TCGA-XF-A9SY-01 1 145594100 145594100 C G POLR3C Missense_Mutation p.E488Q 0.09 tolerated(0.1) probably_damaging(0.948) TCGA-XF-A9SY-01 1 149857969 149857969 G A HIST2H2BE Silent p.I74I 0.04 TCGA-XF-A9SY-01 1 150776657 150776657 T C CTSK Missense_Mutation p.K153R 0.10 tolerated(0.36) possibly_damaging(0.762) TCGA-XF-A9SY-01 1 151070408 151070408 C T GABPB2 Silent p.F184F 0.08 TCGA-XF-A9SY-01 1 152058614 152058614 C A TCHHL1 Missense_Mutation p.R515M 0.11 tolerated(0.06) benign(0.256) TCGA-XF-A9SY-01 1 152384703 152384703 G A CRNN Nonsense_Mutation p.Q3* 0.08 TCGA-XF-A9SY-01 1 152777523 152777523 G T LCE1C 3'UTR 0.10 TCGA-XF-A9SY-01 1 156255629 156255629 G T TMEM79 Silent p.V204V 0.11 TCGA-XF-A9SY-01 1 156821123 156821123 G C INSRR Missense_Mutation p.F396L 0.10 tolerated(1) benign(0.011) TCGA-XF-A9SY-01 1 156821165 156821165 G C INSRR Silent p.L382L 0.10 TCGA-XF-A9SY-01 1 158450030 158450030 G A OR10R2 Missense_Mutation p.M121I 0.07 deleterious(0.01) benign(0.407) TCGA-XF-A9SY-01 1 158609748 158609748 G T SPTA1 Missense_Mutation p.T1596K 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 1 159847251 159847251 G C CCDC19 Missense_Mutation p.A349G 0.09 tolerated(0.19) possibly_damaging(0.853) TCGA-XF-A9SY-01 1 161128323 161128323 G T UFC1 3'UTR 0.13 TCGA-XF-A9SY-01 1 161559492 161559492 C T RP11-25K21.6 Intron 0.10 TCGA-XF-A9SY-01 1 186276866 186276866 C T PRG4 Missense_Mutation p.A672V 0.11 unknown(0) TCGA-XF-A9SY-01 1 197390138 197390138 T C CRB1 Missense_Mutation p.C394R 0.10 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 1 202568381 202568381 A T SYT2 Missense_Mutation p.S340T 0.07 deleterious(0.04) probably_damaging(0.941) TCGA-XF-A9SY-01 1 207086276 207086276 C A FAIM3 Missense_Mutation p.R162I 0.07 deleterious(0.01) benign(0.177) TCGA-XF-A9SY-01 1 22310252 22310252 C G CELA3B Nonsense_Mutation p.S143* 0.13 TCGA-XF-A9SY-01 1 232629405 232629405 C T SIPA1L2 Silent p.E495E 0.12 TCGA-XF-A9SY-01 1 240370691 240370691 C A FMN2 Missense_Mutation p.P860H 0.20 unknown(0) TCGA-XF-A9SY-01 1 242287805 242287805 G A PLD5 Nonsense_Mutation p.Q300* 0.11 TCGA-XF-A9SY-01 1 247263885 247263885 C T ZNF669 Missense_Mutation p.D396N 0.06 tolerated(0.08) possibly_damaging(0.723) TCGA-XF-A9SY-01 1 248616938 248616938 C A OR2T2 Silent p.T280T 0.07 TCGA-XF-A9SY-01 1 27676943 27676943 G A SYTL1 Silent p.R324R 0.07 TCGA-XF-A9SY-01 1 32673416 32673416 G A IQCC Silent p.E458E 0.08 TCGA-XF-A9SY-01 1 42621249 42621249 G A GUCA2B Silent p.A107A 0.13 TCGA-XF-A9SY-01 1 43881758 43881758 C T SZT2 Missense_Mutation p.S253L 0.11 tolerated(0.09) benign(0.31) TCGA-XF-A9SY-01 1 44365307 44365307 G C ST3GAL3 Missense_Mutation p.E287Q 0.08 tolerated(0.12) possibly_damaging(0.628) TCGA-XF-A9SY-01 1 45475299 45475299 G A HECTD3 Silent p.S272S 0.11 TCGA-XF-A9SY-01 1 46120320 46120320 G A GPBP1L1 Silent p.F124F 0.12 TCGA-XF-A9SY-01 1 46746110 46746110 C T LRRC41 Missense_Mutation p.A627T 0.11 tolerated(0.41) possibly_damaging(0.682) TCGA-XF-A9SY-01 1 52882369 52882369 C G PRPF38A 3'UTR 0.07 TCGA-XF-A9SY-01 1 63024686 63024686 C A DOCK7 Missense_Mutation p.R802I 0.11 deleterious(0.02) possibly_damaging(0.8) TCGA-XF-A9SY-01 1 65874363 65874363 C G DNAJC6 Missense_Mutation p.S844C 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-XF-A9SY-01 1 65897510 65897510 G A LEPROT Missense_Mutation p.V102M 0.06 deleterious(0.04) possibly_damaging(0.808) TCGA-XF-A9SY-01 1 68948511 68948511 G T DEPDC1 Missense_Mutation p.S327Y 0.09 deleterious(0.01) benign(0.429) TCGA-XF-A9SY-01 1 70339243 70339243 C A LRRC7 Intron 0.10 TCGA-XF-A9SY-01 1 70482166 70482166 C A LRRC7 Missense_Mutation p.F385L 0.09 deleterious(0.04) benign(0.238) TCGA-XF-A9SY-01 1 89654401 89654401 A G GBP4 Missense_Mutation p.L425P 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9SY-01 1 89655855 89655855 G T GBP4 Missense_Mutation p.Q355K 0.07 deleterious(0.02) benign(0.261) TCGA-XF-A9SY-01 1 89657165 89657165 G A GBP4 Missense_Mutation p.S232L 0.07 tolerated(0.82) benign(0.33) TCGA-XF-A9SY-01 20 14306971 14306971 G T FLRT3 Silent p.P394P 0.07 TCGA-XF-A9SY-01 20 18379185 18379185 T C DZANK1 Silent p.A506A 0.17 TCGA-XF-A9SY-01 20 2291683 2291683 G A TGM3 Missense_Mutation p.A150T 0.18 tolerated(0.33) benign(0.071) TCGA-XF-A9SY-01 20 34208665 34208665 G A SPAG4 Silent p.E379E 0.12 TCGA-XF-A9SY-01 20 34240861 34240861 C A RBM12 Missense_Mutation p.G795V 0.20 deleterious(0.01) unknown(0) TCGA-XF-A9SY-01 20 34389511 34389511 G T PHF20 Missense_Mutation p.D23Y 0.12 deleterious(0) possibly_damaging(0.841) TCGA-XF-A9SY-01 20 34459028 34459028 G C PHF20 Silent p.T358T 0.11 TCGA-XF-A9SY-01 20 35060760 35060760 G A DLGAP4 Missense_Mutation p.E214K 0.11 tolerated(0.11) benign(0.308) TCGA-XF-A9SY-01 20 35060907 35060907 G C DLGAP4 Missense_Mutation p.E263Q 0.12 tolerated(0.41) benign(0.124) TCGA-XF-A9SY-01 20 35060912 35060912 G A DLGAP4 Silent p.L264L 0.12 TCGA-XF-A9SY-01 20 36468584 36468584 G A CTNNBL1 Missense_Mutation p.E432K 0.20 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SY-01 20 37150306 37150306 G C RALGAPB Missense_Mutation p.K528N 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 20 41076862 41076862 C T PTPRT Missense_Mutation p.E520K 0.14 tolerated(0.12) benign(0.049) TCGA-XF-A9SY-01 20 41419868 41419868 G C PTPRT Silent p.L151L 0.15 TCGA-XF-A9SY-01 20 43926963 43926963 C A MATN4 Missense_Mutation p.G425W 0.12 probably_damaging(1) TCGA-XF-A9SY-01 20 45354596 45354596 G T SLC2A10 Missense_Mutation p.M307I 0.12 deleterious(0) possibly_damaging(0.56) TCGA-XF-A9SY-01 20 55111292 55111292 C A FAM209B Missense_Mutation p.A105D 0.11 tolerated(0.06) probably_damaging(0.947) TCGA-XF-A9SY-01 20 57613582 57613582 C T SLMO2 Missense_Mutation p.G47E 0.15 deleterious(0.02) possibly_damaging(0.867) TCGA-XF-A9SY-01 20 58559852 58559852 G C CDH26 Missense_Mutation p.D234H 0.19 tolerated(0.12) benign(0.127) TCGA-XF-A9SY-01 20 60504806 60504806 C A CDH4 Missense_Mutation p.D715E 0.15 tolerated(1) benign(0) TCGA-XF-A9SY-01 20 61510964 61510964 C T DIDO1 Missense_Mutation p.R2115K 0.06 benign(0.192) TCGA-XF-A9SY-01 20 61513002 61513002 C A DIDO1 Nonsense_Mutation p.E1436* 0.09 TCGA-XF-A9SY-01 20 62616366 62616366 G C PRPF6 Missense_Mutation p.R116T 0.11 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SY-01 20 7886851 7886851 C A HAO1 Missense_Mutation p.W224L 0.13 deleterious(0.03) probably_damaging(0.982) TCGA-XF-A9SY-01 21 39426877 39426877 T C DSCR4 3'UTR 0.07 TCGA-XF-A9SY-01 21 45534585 45534585 C T PWP2 Silent p.L136L 0.08 TCGA-XF-A9SY-01 22 26294300 26294300 C T MYO18B Silent p.D1565D 0.19 TCGA-XF-A9SY-01 22 30741131 30741131 G A SF3A1 Missense_Mutation p.P148S 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-XF-A9SY-01 22 31059774 31059774 C T DUSP18 Missense_Mutation p.D73N 0.21 deleterious(0) probably_damaging(0.982) TCGA-XF-A9SY-01 22 32555103 32555103 C T C22orf42 Missense_Mutation p.E34K 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.486) TCGA-XF-A9SY-01 22 38465038 38465038 A G PICK1 Splice_Site p.X117_splice 0.30 TCGA-XF-A9SY-01 22 41536229 41536229 G T EP300 Nonsense_Mutation p.E616* 0.13 TCGA-XF-A9SY-01 2 10929079 10929079 G T PDIA6 Missense_Mutation p.T290K 0.21 tolerated(0.44) benign(0.016) TCGA-XF-A9SY-01 2 110373434 110373434 A G SOWAHC Silent p.P456P 0.12 TCGA-XF-A9SY-01 2 120413966 120413966 G C PCDP1 Missense_Mutation p.E815Q 0.17 tolerated(0.05) probably_damaging(0.973) TCGA-XF-A9SY-01 2 127834239 127834239 T G BIN1 Missense_Mutation p.Q43P 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-XF-A9SY-01 2 128932429 128932429 A G UGGT1 Missense_Mutation p.Y1179C 0.21 tolerated(0.06) probably_damaging(0.94) TCGA-XF-A9SY-01 2 132273177 132273177 G T AC093838.4 Intron 0.33 TCGA-XF-A9SY-01 2 135890467 135890467 C T RAB3GAP1 Silent p.F413F 0.09 TCGA-XF-A9SY-01 2 137814362 137814362 C A THSD7B Missense_Mutation p.A171D 0.18 deleterious(0) probably_damaging(0.943) TCGA-XF-A9SY-01 2 141459386 141459386 C A LRP1B Missense_Mutation p.G2111C 0.21 probably_damaging(0.965) TCGA-XF-A9SY-01 2 152536438 152536438 G C NEB Missense_Mutation p.I1047M 0.12 possibly_damaging(0.888) TCGA-XF-A9SY-01 2 154800991 154800991 A G GALNT13 5'UTR 0.14 TCGA-XF-A9SY-01 2 160194240 160194240 A G BAZ2B Missense_Mutation p.V1833A 0.11 probably_damaging(0.992) TCGA-XF-A9SY-01 2 160621181 160621181 C G MARCH7 Silent p.L684L 0.07 TCGA-XF-A9SY-01 2 163250972 163250972 G T KCNH7 Silent p.S879S 0.14 TCGA-XF-A9SY-01 2 168725472 168725472 T C B3GALT1 5'UTR 0.11 TCGA-XF-A9SY-01 2 173356018 173356018 C G ITGA6 Missense_Mutation p.L950V 0.19 tolerated(0.55) benign(0.001) TCGA-XF-A9SY-01 2 174062798 174062798 G T MLTK Missense_Mutation p.L209F 0.19 tolerated(0.15) probably_damaging(0.977) TCGA-XF-A9SY-01 2 175436616 175436616 G A WIPF1 Missense_Mutation p.A306V 0.21 tolerated(0.11) probably_damaging(0.956) TCGA-XF-A9SY-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 2 179500885 179500885 T A TTN Missense_Mutation p.N13805Y 0.33 TCGA-XF-A9SY-01 2 179516232 179516232 T A TTN Missense_Mutation p.E13165D 0.22 TCGA-XF-A9SY-01 2 198948823 198948823 C A PLCL1 Missense_Mutation p.H194Q 0.18 deleterious(0.01) possibly_damaging(0.885) TCGA-XF-A9SY-01 2 219268015 219268015 C T CTDSP1 Nonsense_Mutation p.R178* 0.21 TCGA-XF-A9SY-01 2 220471806 220471806 C G STK11IP Missense_Mutation p.S400C 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 2 225360597 225360597 C G CUL3 Missense_Mutation p.Q598H 0.24 deleterious(0) probably_damaging(0.949) TCGA-XF-A9SY-01 2 225659644 225659644 C G DOCK10 Missense_Mutation p.W1702C 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 2 233759485 233759485 C A NGEF Missense_Mutation p.V324L 0.20 deleterious(0) probably_damaging(0.925) TCGA-XF-A9SY-01 2 24305843 24305843 G T TP53I3 Silent p.L106L 0.21 TCGA-XF-A9SY-01 2 29430114 29430114 G T ALK Silent p.G1287G 0.16 TCGA-XF-A9SY-01 2 32703843 32703843 G C BIRC6 Missense_Mutation p.W2403C 0.09 probably_damaging(0.996) TCGA-XF-A9SY-01 2 3691547 3691547 C A COLEC11 Missense_Mutation p.H233N 0.15 tolerated(0.58) benign(0.054) TCGA-XF-A9SY-01 2 45169361 45169361 G T SIX3 Missense_Mutation p.G40C 0.14 tolerated_low_confidence(0.16) benign(0.004) TCGA-XF-A9SY-01 2 47635645 47635645 G C MSH2 Missense_Mutation p.R106T 0.13 tolerated(0.08) benign(0.049) TCGA-XF-A9SY-01 2 55407846 55407846 A T CLHC1 Missense_Mutation p.L395Q 0.14 deleterious(0) probably_damaging(0.933) TCGA-XF-A9SY-01 2 55518818 55518818 G T CCDC88A 3'UTR 0.23 TCGA-XF-A9SY-01 2 60687732 60687732 C T BCL11A Missense_Mutation p.C772Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SY-01 2 60687791 60687791 C G BCL11A Missense_Mutation p.K752N 0.05 deleterious(0) possibly_damaging(0.833) TCGA-XF-A9SY-01 2 63176055 63176055 G T EHBP1 Missense_Mutation p.D727Y 0.09 deleterious_low_confidence(0.01) benign(0.089) TCGA-XF-A9SY-01 2 69049647 69049647 A G ARHGAP25 Missense_Mutation p.N459S 0.08 tolerated(0.99) benign(0.019) TCGA-XF-A9SY-01 2 73298774 73298774 C A SFXN5 Missense_Mutation p.D21Y 0.24 deleterious(0.03) unknown(0) TCGA-XF-A9SY-01 2 73868184 73868184 A G NAT8 Missense_Mutation p.M191T 0.19 deleterious(0.01) benign(0.056) TCGA-XF-A9SY-01 2 79313604 79313604 G T REG1B Silent p.G70G 0.08 TCGA-XF-A9SY-01 2 8888031 8888031 G C KIDINS220 Missense_Mutation p.Q1172E 0.19 tolerated(0.26) unknown(0) TCGA-XF-A9SY-01 2 89568222 89568222 C A IGKV1-33 Missense_Mutation p.R4M 0.08 tolerated(0.08) benign(0.256) TCGA-XF-A9SY-01 2 98736153 98736153 G C VWA3B Missense_Mutation p.D157H 0.14 tolerated(0.05) possibly_damaging(0.863) TCGA-XF-A9SY-01 3 100100544 100100544 C T TOMM70A Missense_Mutation p.D267N 0.08 deleterious(0) possibly_damaging(0.83) TCGA-XF-A9SY-01 3 108147351 108147351 C G MYH15 Missense_Mutation p.M1250I 0.18 tolerated(0.72) benign(0.17) TCGA-XF-A9SY-01 3 112991550 112991550 G C BOC Missense_Mutation p.E321Q 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-XF-A9SY-01 3 119263418 119263418 C G CD80 Missense_Mutation p.E133Q 0.10 tolerated(0.07) benign(0.319) TCGA-XF-A9SY-01 3 122345737 122345737 C T PARP15 Missense_Mutation p.S432L 0.06 tolerated(0.15) benign(0.096) TCGA-XF-A9SY-01 3 122345780 122345780 C T PARP15 Silent p.V446V 0.11 TCGA-XF-A9SY-01 3 123419159 123419159 A G MYLK Silent p.N1052N 0.10 TCGA-XF-A9SY-01 3 123419168 123419168 G T MYLK Silent p.P1049P 0.09 TCGA-XF-A9SY-01 3 128780788 128780788 G A GP9 Missense_Mutation p.G69E 0.20 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 3 129275475 129275475 C G PLXND1 Missense_Mutation p.K1882N 0.22 tolerated(0.74) probably_damaging(0.996) TCGA-XF-A9SY-01 3 136664750 136664750 T C NCK1 Silent p.N184N 0.15 TCGA-XF-A9SY-01 3 146251317 146251317 G T PLSCR1 Missense_Mutation p.H12N 0.10 deleterious_low_confidence(0.02) benign(0.017) TCGA-XF-A9SY-01 3 151167032 151167032 T C IGSF10 Missense_Mutation p.D246G 0.12 deleterious(0.03) possibly_damaging(0.903) TCGA-XF-A9SY-01 3 151171209 151171209 A G IGSF10 Silent p.H226H 0.25 TCGA-XF-A9SY-01 3 164908343 164908343 T A SLITRK3 Missense_Mutation p.L92F 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 3 168845771 168845771 G A MECOM Missense_Mutation p.P107S 0.06 tolerated(0.67) benign(0.098) TCGA-XF-A9SY-01 3 169587498 169587498 C A LRRC31 Missense_Mutation p.R33I 0.06 tolerated(0.12) benign(0.022) TCGA-XF-A9SY-01 3 172046853 172046853 G A FNDC3B Missense_Mutation p.D456N 0.21 tolerated(0.19) benign(0.053) TCGA-XF-A9SY-01 3 172165995 172165995 C A GHSR Missense_Mutation p.R70L 0.15 tolerated(0.06) benign(0.089) TCGA-XF-A9SY-01 3 182547496 182547496 G T ATP11B Nonsense_Mutation p.G91* 0.11 TCGA-XF-A9SY-01 3 184039813 184039813 G C EIF4G1 Missense_Mutation p.E488Q 0.13 tolerated(0.18) possibly_damaging(0.787) TCGA-XF-A9SY-01 3 186917786 186917786 C T RTP1 Silent p.P240P 0.09 TCGA-XF-A9SY-01 3 196281322 196281322 C G WDR53 Missense_Mutation p.K279N 0.05 deleterious(0.03) benign(0.287) TCGA-XF-A9SY-01 3 196281454 196281454 C A WDR53 Silent p.L235L 0.07 TCGA-XF-A9SY-01 3 197707267 197707267 C G LMLN Nonsense_Mutation p.S207* 0.08 TCGA-XF-A9SY-01 3 26751267 26751267 C A LRRC3B Missense_Mutation p.P35H 0.08 deleterious(0) probably_damaging(0.993) TCGA-XF-A9SY-01 3 37032824 37032824 G A EPM2AIP1 Missense_Mutation p.A582V 0.08 deleterious(0.05) probably_damaging(0.997) TCGA-XF-A9SY-01 3 37032825 37032825 C A EPM2AIP1 Missense_Mutation p.A582S 0.09 tolerated(0.35) probably_damaging(0.996) TCGA-XF-A9SY-01 3 38038627 38038627 G C VILL Missense_Mutation p.K170N 0.06 tolerated(0.05) benign(0.151) TCGA-XF-A9SY-01 3 39554871 39554871 C A MOBP Intron 0.14 TCGA-XF-A9SY-01 3 46620775 46620775 G A TDGF1 Missense_Mutation p.D48N 0.10 tolerated(0.13) benign(0.015) TCGA-XF-A9SY-01 3 47960221 47960221 G A MAP4 Nonsense_Mutation p.Q214* 0.09 TCGA-XF-A9SY-01 3 48630676 48630676 C G COL7A1 Missense_Mutation p.E181Q 0.16 unknown(0) TCGA-XF-A9SY-01 3 48699656 48699656 C G CELSR3 Missense_Mutation p.E138Q 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-XF-A9SY-01 3 48699772 48699772 C G CELSR3 Missense_Mutation p.R99P 0.10 deleterious_low_confidence(0.01) benign(0) TCGA-XF-A9SY-01 3 52723201 52723201 G T GNL3 Missense_Mutation p.V174L 0.10 tolerated(1) benign(0.005) TCGA-XF-A9SY-01 3 98251957 98251957 C G GPR15 Silent p.L360L 0.07 TCGA-XF-A9SY-01 4 115997457 115997457 A G NDST4 Missense_Mutation p.S246P 0.14 tolerated(0.32) benign(0) TCGA-XF-A9SY-01 4 118005425 118005425 A T TRAM1L1 3'UTR 0.07 TCGA-XF-A9SY-01 4 1347031 1347031 G C UVSSA Missense_Mutation p.R255T 0.12 deleterious(0) possibly_damaging(0.517) TCGA-XF-A9SY-01 4 148827786 148827786 C G ARHGAP10 Intron 0.22 TCGA-XF-A9SY-01 4 164534481 164534481 G C MARCH1 Missense_Mutation p.T76S 0.11 tolerated(1) benign(0.011) TCGA-XF-A9SY-01 4 169157521 169157521 G C DDX60 Nonsense_Mutation p.S1472* 0.22 TCGA-XF-A9SY-01 4 177116567 177116567 G T SPATA4 Silent p.S49S 0.15 TCGA-XF-A9SY-01 4 55161419 55161419 G A PDGFRA Missense_Mutation p.V1084M 0.11 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-XF-A9SY-01 4 56496622 56496622 G C NMU Missense_Mutation p.P40A 0.10 deleterious(0.03) benign(0.038) TCGA-XF-A9SY-01 4 87028509 87028509 T C MAPK10 Intron 0.14 TCGA-XF-A9SY-01 4 94690421 94690421 G C GRID2 Missense_Mutation p.K807N 0.14 deleterious(0.01) benign(0.361) TCGA-XF-A9SY-01 5 102482250 102482250 G A PPIP5K2 Silent p.G169G 0.10 TCGA-XF-A9SY-01 5 10461436 10461436 G A ROPN1L Silent p.E186E 0.09 TCGA-XF-A9SY-01 5 109106220 109106220 C T MAN2A1 Missense_Mutation p.H392Y 0.19 tolerated(0.25) benign(0.006) TCGA-XF-A9SY-01 5 121488307 121488307 C A ZNF474 Missense_Mutation p.L208I 0.14 tolerated(0.19) benign(0.066) TCGA-XF-A9SY-01 5 133902070 133902070 G A JADE2 Missense_Mutation p.E412K 0.13 deleterious(0.01) possibly_damaging(0.725) TCGA-XF-A9SY-01 5 136993882 136993882 C A KLHL3 Missense_Mutation p.D281Y 0.16 deleterious(0) possibly_damaging(0.635) TCGA-XF-A9SY-01 5 137219226 137219226 G A MYOT Missense_Mutation p.V324I 0.16 tolerated(0.25) benign(0.074) TCGA-XF-A9SY-01 5 138707768 138707768 G C SLC23A1 Nonsense_Mutation p.S579* 0.11 TCGA-XF-A9SY-01 5 140202603 140202603 G A PCDHA5 Missense_Mutation p.E415K 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-A9SY-01 5 140730095 140730095 G C PCDHGB1 Missense_Mutation p.E90Q 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 5 140774319 140774319 C T PCDHGA8 Nonsense_Mutation p.Q647* 0.12 TCGA-XF-A9SY-01 5 148207139 148207139 G C ADRB2 Missense_Mutation p.E249Q 0.19 tolerated(0.5) benign(0.057) TCGA-XF-A9SY-01 5 150901461 150901461 T A FAT2 Missense_Mutation p.T3565S 0.29 benign(0.01) TCGA-XF-A9SY-01 5 150923959 150923959 G C FAT2 Silent p.V2243V 0.13 TCGA-XF-A9SY-01 5 169805863 169805863 C T KCNMB1 Missense_Mutation p.G141R 0.24 tolerated(0.33) benign(0.309) TCGA-XF-A9SY-01 5 170216203 170216203 G C GABRP Missense_Mutation p.E42Q 0.18 tolerated(0.84) benign(0.014) TCGA-XF-A9SY-01 5 19839054 19839054 C T CDH18 Silent p.V14V 0.07 TCGA-XF-A9SY-01 5 23524554 23524554 G T PRDM9 Silent p.L354L 0.19 TCGA-XF-A9SY-01 5 33576407 33576407 C T ADAMTS12 Missense_Mutation p.E1242K 0.09 tolerated(0.49) benign(0.006) TCGA-XF-A9SY-01 5 37000935 37000935 G T NIPBL Missense_Mutation p.K1173N 0.12 deleterious(0) possibly_damaging(0.685) TCGA-XF-A9SY-01 5 37350301 37350301 G T NUP155 Missense_Mutation p.L264I 0.13 tolerated(0.15) possibly_damaging(0.836) TCGA-XF-A9SY-01 5 41149378 41149378 C G C6 Missense_Mutation p.G863A 0.09 tolerated(0.05) possibly_damaging(0.821) TCGA-XF-A9SY-01 5 477488 477488 C A SLC9A3 Silent p.T573T 0.16 TCGA-XF-A9SY-01 5 54275112 54275112 T C ESM1 3'UTR 0.14 TCGA-XF-A9SY-01 5 71495684 71495684 G C MAP1B Missense_Mutation p.E2168Q 0.11 probably_damaging(0.995) TCGA-XF-A9SY-01 5 79086861 79086861 A T CMYA5 Missense_Mutation p.I3920F 0.20 probably_damaging(0.98) TCGA-XF-A9SY-01 5 82833929 82833929 A G VCAN Missense_Mutation p.T1703A 0.08 deleterious(0.01) possibly_damaging(0.524) TCGA-XF-A9SY-01 5 89989985 89989985 G A GPR98 Missense_Mutation p.S2471N 0.29 benign(0.027) TCGA-XF-A9SY-01 6 108204218 108204218 C A SEC63 Nonsense_Mutation p.E603* 0.17 TCGA-XF-A9SY-01 6 109215684 109215684 G T ARMC2 Missense_Mutation p.R229I 0.12 tolerated(0.06) possibly_damaging(0.541) TCGA-XF-A9SY-01 6 110053865 110053865 G T FIG4 Missense_Mutation p.D158Y 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 6 117023265 117023265 G A KPNA5 Silent p.P173P 0.05 TCGA-XF-A9SY-01 6 138584361 138584361 G A KIAA1244 Missense_Mutation p.D581N 0.06 tolerated(0.17) possibly_damaging(0.881) TCGA-XF-A9SY-01 6 146275900 146275900 C G SHPRH Missense_Mutation p.E187Q 0.06 tolerated_low_confidence(0.13) benign(0.035) TCGA-XF-A9SY-01 6 151334931 151334931 C A MTHFD1L Missense_Mutation p.P761H 0.06 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SY-01 6 160218457 160218457 G C MRPL18 Missense_Mutation p.E126D 0.06 deleterious(0.02) possibly_damaging(0.886) TCGA-XF-A9SY-01 6 161056221 161056221 C T LPA Missense_Mutation p.E337K 0.02 tolerated(0.74) benign(0.007) TCGA-XF-A9SY-01 6 162683621 162683621 A G PARK2 Silent p.S116S 0.07 TCGA-XF-A9SY-01 6 165713893 165713893 T C C6orf118 Missense_Mutation p.N279S 0.20 tolerated(0.1) benign(0.101) TCGA-XF-A9SY-01 6 25966926 25966926 G C TRIM38 Missense_Mutation p.C59S 0.20 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 6 30297321 30297321 G A TRIM39 Missense_Mutation p.R76H 0.26 tolerated(0.42) possibly_damaging(0.721) TCGA-XF-A9SY-01 6 30310095 30310095 C T TRIM39 3'UTR 0.15 TCGA-XF-A9SY-01 6 30552007 30552007 C G ABCF1 Missense_Mutation p.L381V 0.09 tolerated(0.41) possibly_damaging(0.669) TCGA-XF-A9SY-01 6 31868052 31868052 C T ZBTB12 Missense_Mutation p.G344D 0.09 deleterious(0.04) probably_damaging(0.931) TCGA-XF-A9SY-01 6 33282940 33282940 G A ZBTB22 Missense_Mutation p.S585F 0.12 deleterious_low_confidence(0.01) benign(0.013) TCGA-XF-A9SY-01 6 34100945 34100945 G A GRM4 Missense_Mutation p.S110F 0.25 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 6 42613228 42613228 G C UBR2 Missense_Mutation p.G770A 0.23 deleterious(0.01) possibly_damaging(0.893) TCGA-XF-A9SY-01 6 52852203 52852203 C T GSTA4 Missense_Mutation p.D31N 0.07 deleterious(0) benign(0.32) TCGA-XF-A9SY-01 6 56467765 56467765 G A DST Intron 0.20 TCGA-XF-A9SY-01 6 70040457 70040457 T C BAI3 Missense_Mutation p.V1032A 0.13 tolerated(0.05) probably_damaging(0.992) TCGA-XF-A9SY-01 6 88315679 88315679 G T ORC3 Nonsense_Mutation p.E123* 0.12 TCGA-XF-A9SY-01 7 100087190 100087190 G C NYAP1 Missense_Mutation p.E616Q 0.22 tolerated(0.5) probably_damaging(0.964) TCGA-XF-A9SY-01 7 107427288 107427288 C A SLC26A3 Missense_Mutation p.G319W 0.14 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 7 113558279 113558279 A C PPP1R3A Missense_Mutation p.V258G 0.14 deleterious(0) possibly_damaging(0.849) TCGA-XF-A9SY-01 7 128846324 128846324 G C SMO Missense_Mutation p.S387T 0.07 tolerated(0.39) benign(0.267) TCGA-XF-A9SY-01 7 129909506 129909506 C G CPA2 Intron 0.13 TCGA-XF-A9SY-01 7 136700941 136700941 C A CHRM2 Nonsense_Mutation p.C443* 0.09 TCGA-XF-A9SY-01 7 14188815 14188815 G T DGKB Missense_Mutation p.P786T 0.08 tolerated(0.69) benign(0.199) TCGA-XF-A9SY-01 7 143095498 143095498 C T EPHA1 Silent p.P460P 0.11 TCGA-XF-A9SY-01 7 143632727 143632727 C A OR2F2 Silent p.A134A 0.10 TCGA-XF-A9SY-01 7 14758228 14758228 C T DGKB Silent p.L135L 0.12 TCGA-XF-A9SY-01 7 149174751 149174751 C T ZNF746 Missense_Mutation p.A206T 0.24 tolerated(0.22) probably_damaging(0.987) TCGA-XF-A9SY-01 7 20193845 20193845 G T MACC1 Silent p.R773R 0.24 TCGA-XF-A9SY-01 7 27135443 27135443 G C HOXA1 Missense_Mutation p.S30W 0.17 tolerated(0.19) possibly_damaging(0.638) TCGA-XF-A9SY-01 7 27203054 27203054 G A HOXA9 3'UTR 0.24 TCGA-XF-A9SY-01 7 42974729 42974729 A G MRPL32 Silent p.K102K 0.20 TCGA-XF-A9SY-01 7 44576479 44576479 G A NPC1L1 Missense_Mutation p.A548V 0.09 deleterious(0.03) benign(0.341) TCGA-XF-A9SY-01 7 44736996 44736996 G C OGDH Missense_Mutation p.Q693H 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 7 45016595 45016595 C A MYO1G Silent p.L57L 0.15 TCGA-XF-A9SY-01 7 47342587 47342587 C A TNS3 Missense_Mutation p.D1140Y 0.13 deleterious(0) probably_damaging(0.982) TCGA-XF-A9SY-01 7 50660520 50660520 C A GRB10 3'UTR 0.21 TCGA-XF-A9SY-01 7 5567369 5567369 C G ACTB 3'UTR 0.10 TCGA-XF-A9SY-01 7 5567439 5567439 C G ACTB Missense_Mutation p.W356C 0.06 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-XF-A9SY-01 7 5568036 5568036 C G ACTB Missense_Mutation p.E226D 0.10 deleterious_low_confidence(0.03) benign(0.091) TCGA-XF-A9SY-01 7 6054921 6054921 C T AIMP2 Nonsense_Mutation p.Q94* 0.07 TCGA-XF-A9SY-01 7 6485700 6485700 C G DAGLB Missense_Mutation p.R44T 0.12 deleterious(0.02) possibly_damaging(0.526) TCGA-XF-A9SY-01 7 6844602 6844602 C A CCZ1B Missense_Mutation p.C358F 0.06 deleterious(0.02) possibly_damaging(0.852) TCGA-XF-A9SY-01 7 75615554 75615554 C G POR Silent p.V631V 0.24 TCGA-XF-A9SY-01 7 77558466 77558466 C T PHTF2 Missense_Mutation p.S353L 0.17 deleterious(0.04) benign(0.187) TCGA-XF-A9SY-01 7 86817604 86817604 G A DMTF1 Silent p.Q466Q 0.07 TCGA-XF-A9SY-01 7 87810908 87810908 A T ADAM22 Missense_Mutation p.N833Y 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9SY-01 7 88966097 88966097 C G ZNF804B Silent p.P1267P 0.10 TCGA-XF-A9SY-01 7 92120771 92120771 C G PEX1 Missense_Mutation p.V1085L 0.09 deleterious(0.01) possibly_damaging(0.78) TCGA-XF-A9SY-01 7 927057 927057 G A GET4 Missense_Mutation p.V123M 0.24 tolerated(0.12) benign(0.166) TCGA-XF-A9SY-01 7 93516176 93516176 G A TFPI2 Missense_Mutation p.R222C 0.07 tolerated(0.14) benign(0.066) TCGA-XF-A9SY-01 7 98535294 98535294 G A TRRAP Missense_Mutation p.E1419K 0.09 benign(0.01) TCGA-XF-A9SY-01 7 98951688 98951688 G T ARPC1A Silent p.L219L 0.27 TCGA-XF-A9SY-01 7 99123464 99123464 C T ZKSCAN5 Silent p.L267L 0.05 TCGA-XF-A9SY-01 8 103301731 103301731 G A UBR5 Missense_Mutation p.R1555W 0.16 deleterious(0.03) probably_damaging(0.988) TCGA-XF-A9SY-01 8 110575659 110575659 C A EBAG9 Intron 0.43 TCGA-XF-A9SY-01 8 110980338 110980338 C A KCNV1 Silent p.G494G 0.45 TCGA-XF-A9SY-01 8 113585870 113585870 T A CSMD3 Missense_Mutation p.D1301V 0.10 deleterious(0.03) probably_damaging(0.982) TCGA-XF-A9SY-01 8 144682042 144682042 G T TIGD5 3'UTR 0.25 TCGA-XF-A9SY-01 8 145806260 145806260 G T ARHGAP39 Missense_Mutation p.A161E 0.15 tolerated(0.98) benign(0.109) TCGA-XF-A9SY-01 8 27320812 27320812 G C CHRNA2 Missense_Mutation p.P383R 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 8 37730040 37730040 C A RAB11FIP1 Silent p.V760V 0.14 TCGA-XF-A9SY-01 8 39468069 39468069 T C ADAM18 Silent p.N122N 0.10 TCGA-XF-A9SY-01 8 41798546 41798546 G C KAT6A Silent p.L951L 0.06 TCGA-XF-A9SY-01 8 41832305 41832305 C T KAT6A Missense_Mutation p.E467K 0.34 benign(0.306) TCGA-XF-A9SY-01 8 53597999 53597999 C T RB1CC1 Missense_Mutation p.G11R 0.05 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 8 55538695 55538695 C A RP1 Silent p.S751S 0.16 TCGA-XF-A9SY-01 8 69445432 69445432 A G C8orf34 Intron 0.22 TCGA-XF-A9SY-01 8 91078188 91078188 G T CALB1 Missense_Mutation p.L130M 0.10 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 8 91963371 91963371 C A NECAB1 Missense_Mutation p.F323L 0.09 deleterious(0) probably_damaging(0.992) TCGA-XF-A9SY-01 8 94747019 94747019 G A RBM12B Silent p.F540F 0.06 TCGA-XF-A9SY-01 9 113547941 113547941 A G MUSK Missense_Mutation p.N574S 0.05 deleterious(0) probably_damaging(0.963) TCGA-XF-A9SY-01 9 114842402 114842402 G T SUSD1 Nonsense_Mutation p.C506* 0.08 TCGA-XF-A9SY-01 9 115805098 115805098 G T ZFP37 Silent p.P600P 0.06 TCGA-XF-A9SY-01 9 120470957 120470957 C G TLR4 Silent p.G70G 0.06 TCGA-XF-A9SY-01 9 120475511 120475511 G T TLR4 Nonsense_Mutation p.E369* 0.12 TCGA-XF-A9SY-01 9 125486319 125486319 C A OR1L4 Silent p.G17G 0.08 TCGA-XF-A9SY-01 9 127790711 127790711 C G SCAI Missense_Mutation p.E148Q 0.08 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SY-01 9 130931369 130931369 C T CIZ1 Missense_Mutation p.E753K 0.17 tolerated(0.09) benign(0.199) TCGA-XF-A9SY-01 9 136210920 136210920 C A MED22 Intron 0.10 TCGA-XF-A9SY-01 9 139289816 139289816 G C SNAPC4 Missense_Mutation p.S135R 0.08 deleterious(0.01) possibly_damaging(0.83) TCGA-XF-A9SY-01 9 141016298 141016298 C A CACNA1B Silent p.G2289G 0.11 TCGA-XF-A9SY-01 9 20929356 20929356 G A FOCAD Splice_Site p.X1027_splice 0.30 TCGA-XF-A9SY-01 9 21971055 21971056 - CCGG CDKN2A Frame_Shift_Ins p.A102Rfs*19 0.32 TCGA-XF-A9SY-01 9 34257592 34257592 C G KIF24 Missense_Mutation p.E671D 0.05 tolerated(0.08) benign(0.424) TCGA-XF-A9SY-01 9 4125879 4125879 C A GLIS3 Missense_Mutation p.V151F 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9SY-01 9 65507551 65507551 C T SPATA31A7 Silent p.P88P 0.09 TCGA-XF-A9SY-01 9 77455050 77455050 C A TRPM6 Missense_Mutation p.G145V 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 9 80409447 80409447 C T GNAQ Missense_Mutation p.V223I 0.11 deleterious(0.03) probably_damaging(0.961) TCGA-XF-A9SY-01 9 84608242 84608242 C G SPATA31D1 Missense_Mutation p.Q953E 0.10 tolerated(1) benign(0.001) TCGA-XF-A9SY-01 X 101091708 101091708 G T NXF5 Intron 0.06 TCGA-XF-A9SY-01 X 10163105 10163105 G A CLCN4 Silent p.Q133Q 0.14 TCGA-XF-A9SY-01 X 101970156 101970156 C T GPRASP2 Missense_Mutation p.A120V 0.14 tolerated(0.13) benign(0.004) TCGA-XF-A9SY-01 X 104464971 104464971 C G TEX13A Missense_Mutation p.E37D 0.22 tolerated(0.14) benign(0.154) TCGA-XF-A9SY-01 X 11783671 11783671 C G MSL3 Missense_Mutation p.P332A 0.06 tolerated(0.1) benign(0.015) TCGA-XF-A9SY-01 X 123637414 123637414 T A TENM1 Missense_Mutation p.Q1147H 0.12 tolerated(0.21) benign(0.008) TCGA-XF-A9SY-01 X 128946732 128946732 T C ZDHHC9 Missense_Mutation p.T247A 0.16 deleterious(0) possibly_damaging(0.761) TCGA-XF-A9SY-01 X 142718438 142718438 T A SLITRK4 Missense_Mutation p.N163Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SY-01 X 149895711 149895711 C A MTMR1 Missense_Mutation p.P118Q 0.12 deleterious(0) possibly_damaging(0.648) TCGA-XF-A9SY-01 X 151997170 151997170 C A CETN2 Missense_Mutation p.D114Y 0.05 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SY-01 X 153696528 153696528 C G PLXNA3 Missense_Mutation p.F1308L 0.06 deleterious(0.02) probably_damaging(0.995) TCGA-XF-A9SY-01 X 154157100 154157100 G A F8 Silent p.C1655C 0.16 TCGA-XF-A9SY-01 X 154227852 154227852 G C F8 Missense_Mutation p.S56C 0.14 deleterious(0.01) possibly_damaging(0.687) TCGA-XF-A9SY-01 X 21534627 21534627 G C CNKSR2 Missense_Mutation p.V279L 0.09 deleterious(0) possibly_damaging(0.678) TCGA-XF-A9SY-01 X 24197517 24197517 C T ZFX Silent p.I92I 0.04 TCGA-XF-A9SY-01 X 24229189 24229189 T C ZFX Missense_Mutation p.L705P 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A9SY-01 X 24229192 24229192 G A ZFX Missense_Mutation p.S706N 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-XF-A9SY-01 X 26212478 26212478 G T MAGEB6 Missense_Mutation p.G172V 0.14 tolerated(0.24) possibly_damaging(0.521) TCGA-XF-A9SY-01 X 41060455 41060455 G C USP9X Missense_Mutation p.R1582S 0.09 deleterious(0) probably_damaging(0.985) TCGA-XF-A9SY-01 X 46466593 46466593 C T SLC9A7 Missense_Mutation p.E658K 0.33 deleterious(0.02) benign(0.075) TCGA-XF-A9SY-01 X 47101874 47101874 G C USP11 Missense_Mutation p.D524H 0.07 deleterious(0) benign(0.434) TCGA-XF-A9SY-01 X 54975594 54975594 T C PFKFB1 Missense_Mutation p.T303A 0.33 probably_damaging(0.997) TCGA-XF-A9SY-01 X 65480069 65480069 G T HEPH Missense_Mutation p.G1109V 0.07 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SY-01 X 67273548 67273548 G C OPHN1 Missense_Mutation p.Q755E 0.23 deleterious_low_confidence(0.04) benign(0.197) TCGA-XF-A9SY-01 X 84560834 84560834 A T POF1B Nonsense_Mutation p.L467* 0.07 TCGA-XF-A9SZ-01 10 129905628 129905628 T C MKI67 Missense_Mutation p.I1492M 0.06 tolerated(0.39) benign(0.053) TCGA-XF-A9SZ-01 10 135346278 135346278 A T CYP2E1 Missense_Mutation p.E244V 0.23 tolerated(0.17) benign(0.007) TCGA-XF-A9SZ-01 10 15688846 15688846 A G ITGA8 Silent p.N402N 0.25 TCGA-XF-A9SZ-01 10 23399245 23399245 C T MSRB2 Silent p.F98F 0.18 TCGA-XF-A9SZ-01 10 27412532 27412532 G A YME1L1 Missense_Mutation p.S406F 0.18 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SZ-01 10 465092 465092 A G DIP2C Missense_Mutation p.S218P 0.13 tolerated(0.25) benign(0) TCGA-XF-A9SZ-01 10 73437255 73437255 C T CDH23 Silent p.A111A 0.11 TCGA-XF-A9SZ-01 10 90703583 90703583 G A ACTA2 Missense_Mutation p.P114S 0.22 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-XF-A9SZ-01 10 91143777 91143777 G T IFIT1B Missense_Mutation p.G236V 0.05 deleterious(0) possibly_damaging(0.701) TCGA-XF-A9SZ-01 11 10518419 10518419 C T AMPD3 Silent p.F506F 0.25 TCGA-XF-A9SZ-01 11 119509452 119509452 C T RP11-196E1.3 Intron 0.25 TCGA-XF-A9SZ-01 11 11987362 11987362 G A DKK3 Missense_Mutation p.P275L 0.25 deleterious(0) possibly_damaging(0.854) TCGA-XF-A9SZ-01 11 121424812 121424812 C T SORL1 Silent p.V811V 0.10 TCGA-XF-A9SZ-01 11 123516420 123516420 C T SCN3B Missense_Mutation p.E32K 0.17 tolerated(0.08) possibly_damaging(0.516) TCGA-XF-A9SZ-01 11 124266739 124266739 C T OR8B3 Missense_Mutation p.S170N 0.12 tolerated_low_confidence(0.15) benign(0.003) TCGA-XF-A9SZ-01 11 18253131 18253131 G A SAA4 Missense_Mutation p.S104F 0.35 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SZ-01 11 22276947 22276947 G A ANO5 Missense_Mutation p.R404Q 0.32 deleterious(0) benign(0.316) TCGA-XF-A9SZ-01 11 3125601 3125601 C T OSBPL5 Missense_Mutation p.E356K 0.19 deleterious(0.02) benign(0.069) TCGA-XF-A9SZ-01 11 47267027 47267027 C T ACP2 Missense_Mutation p.A183T 0.20 tolerated(0.22) benign(0.008) TCGA-XF-A9SZ-01 11 47376865 47376865 C A SPI1 Missense_Mutation p.K243N 0.45 deleterious(0) benign(0.193) TCGA-XF-A9SZ-01 11 60264891 60264891 C A MS4A12 Missense_Mutation p.L34M 0.19 tolerated(0.21) benign(0.027) TCGA-XF-A9SZ-01 11 60703552 60703552 C T TMEM132A Missense_Mutation p.R750C 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SZ-01 11 64064691 64064691 C T KCNK4 Silent p.V138V 0.23 TCGA-XF-A9SZ-01 11 6478982 6478982 A T TRIM3 Missense_Mutation p.D153E 0.31 tolerated(0.38) possibly_damaging(0.459) TCGA-XF-A9SZ-01 11 65029741 65029741 C T POLA2 5'UTR 0.30 TCGA-XF-A9SZ-01 12 117652983 117652983 G A NOS1 3'Flank 0.24 TCGA-XF-A9SZ-01 12 122861994 122861994 G A CLIP1 Missense_Mutation p.S200L 0.07 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SZ-01 12 21325610 21325610 C G SLCO1B1 Missense_Mutation p.S37R 0.11 deleterious(0) probably_damaging(0.965) TCGA-XF-A9SZ-01 12 32996178 32996178 G C PKP2 Missense_Mutation p.T483S 0.23 tolerated_low_confidence(0.59) benign(0.001) TCGA-XF-A9SZ-01 12 39079320 39079320 A T CPNE8 Missense_Mutation p.F415I 0.17 tolerated(0.08) possibly_damaging(0.779) TCGA-XF-A9SZ-01 12 46287491 46287491 G C ARID2 Missense_Mutation p.E1784Q 0.16 tolerated(0.1) probably_damaging(0.954) TCGA-XF-A9SZ-01 12 50869384 50869384 C A LARP4 Missense_Mutation p.L638I 0.04 deleterious(0) possibly_damaging(0.895) TCGA-XF-A9SZ-01 12 52385735 52385735 G A ACVR1B Silent p.Q491Q 0.16 TCGA-XF-A9SZ-01 12 52774320 52774320 C G KRT84 Missense_Mutation p.E417D 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-XF-A9SZ-01 12 55524482 55524482 T C OR9K2 Silent p.P310P 0.03 TCGA-XF-A9SZ-01 12 8048100 8048100 T C NANOGP1 RNA 0.20 TCGA-XF-A9SZ-01 12 85450336 85450336 G C LRRIQ1 Missense_Mutation p.E589Q 0.29 tolerated(0.05) possibly_damaging(0.811) TCGA-XF-A9SZ-01 12 86377301 86377301 G A MGAT4C Missense_Mutation p.R99W 0.18 deleterious(0) probably_damaging(0.968) TCGA-XF-A9SZ-01 13 113803437 113803437 C T F10 Missense_Mutation p.T358M 0.22 tolerated(0.15) probably_damaging(0.932) TCGA-XF-A9SZ-01 13 21357905 21357905 C G XPO4 Missense_Mutation p.E1138Q 0.24 deleterious(0.04) possibly_damaging(0.772) TCGA-XF-A9SZ-01 13 21395848 21395848 C T XPO4 Missense_Mutation p.E390K 0.17 deleterious(0.02) possibly_damaging(0.881) TCGA-XF-A9SZ-01 13 37593507 37593507 G A SUPT20H Missense_Mutation p.S615L 0.13 deleterious(0.02) benign(0.236) TCGA-XF-A9SZ-01 13 45147665 45147665 G C TSC22D1 Missense_Mutation p.T849R 0.24 deleterious(0.02) benign(0.192) TCGA-XF-A9SZ-01 13 48923123 48923123 C - RB1 Frame_Shift_Del p.L191* 0.09 TCGA-XF-A9SZ-01 13 48953730 48953730 C T RB1 Nonsense_Mutation p.R445* 0.15 TCGA-XF-A9SZ-01 13 98897018 98897018 G A FARP1 Intron 0.12 TCGA-XF-A9SZ-01 14 24902173 24902173 C T KHNYN Silent p.L504L 0.26 TCGA-XF-A9SZ-01 14 55615077 55615077 C - DLGAP5 Frame_Shift_Del p.E845Nfs*22 0.23 TCGA-XF-A9SZ-01 14 56119741 56119741 C G KTN1 Missense_Mutation p.Q901E 0.21 tolerated(0.25) benign(0.012) TCGA-XF-A9SZ-01 15 28478614 28478614 C A HERC2 Missense_Mutation p.R1482I 0.27 benign(0.425) TCGA-XF-A9SZ-01 15 41101389 41101389 G - ZFYVE19 Frame_Shift_Del p.N119Tfs*14 0.29 TCGA-XF-A9SZ-01 15 41222182 41222182 C T DLL4 Silent p.V68V 0.25 TCGA-XF-A9SZ-01 15 41222206 41222206 C T DLL4 Silent p.F76F 0.21 TCGA-XF-A9SZ-01 15 41222285 41222285 C G DLL4 Missense_Mutation p.L103V 0.40 tolerated(0.22) benign(0.061) TCGA-XF-A9SZ-01 15 41222305 41222305 C T DLL4 Silent p.F109F 0.33 TCGA-XF-A9SZ-01 15 43531157 43531157 A C TGM5 Silent p.A401A 0.29 TCGA-XF-A9SZ-01 15 43572021 43572021 G A TGM7 Missense_Mutation p.L494F 0.30 tolerated(0.86) possibly_damaging(0.793) TCGA-XF-A9SZ-01 15 43924457 43924457 C G CATSPER2 Missense_Mutation p.E501Q 0.20 tolerated(0.08) possibly_damaging(0.504) TCGA-XF-A9SZ-01 15 51772975 51772975 G A DMXL2 Silent p.L2110L 0.24 TCGA-XF-A9SZ-01 15 59373153 59373153 C G RNF111 Missense_Mutation p.P656R 0.17 deleterious(0) possibly_damaging(0.534) TCGA-XF-A9SZ-01 15 64747223 64747223 G C TRIP4 Missense_Mutation p.G569A 0.15 tolerated(0.68) possibly_damaging(0.541) TCGA-XF-A9SZ-01 15 77406965 77406965 C G PEAK1 Missense_Mutation p.E1592Q 0.10 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 15 81271456 81271456 A G MESDC2 3'UTR 0.26 TCGA-XF-A9SZ-01 15 82574884 82574884 A T FAM154B Missense_Mutation p.E226D 0.25 tolerated(0.45) benign(0.292) TCGA-XF-A9SZ-01 15 83424821 83424821 G C FSD2 3'UTR 0.14 TCGA-XF-A9SZ-01 16 15129363 15129363 C G PDXDC1 Missense_Mutation p.T687R 0.36 tolerated(0.14) probably_damaging(0.943) TCGA-XF-A9SZ-01 16 24551917 24551917 C G RBBP6 5'UTR 0.16 TCGA-XF-A9SZ-01 16 24902221 24902221 G A SLC5A11 Silent p.L232L 0.17 TCGA-XF-A9SZ-01 16 28618164 28618164 G A SULT1A1 Missense_Mutation p.S171F 0.11 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SZ-01 16 30095999 30095999 G T PPP4C Missense_Mutation p.W206L 0.12 deleterious(0) possibly_damaging(0.54) TCGA-XF-A9SZ-01 16 354320 354320 A C AXIN1 Missense_Mutation p.L413R 0.22 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SZ-01 16 49671299 49671301 GTG - ZNF423 In_Frame_Del p.H588del 0.16 TCGA-XF-A9SZ-01 16 53301296 53301296 G C CHD9 Missense_Mutation p.E1471Q 0.28 probably_damaging(0.958) TCGA-XF-A9SZ-01 16 76569580 76569580 A T CNTNAP4 Missense_Mutation p.Y892F 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-XF-A9SZ-01 16 90020648 90020648 C T DEF8 Intron 0.16 TCGA-XF-A9SZ-01 16 90020725 90020725 C G DEF8 Missense_Mutation p.S83C 0.18 tolerated(0.06) benign(0.428) TCGA-XF-A9SZ-01 16 9009379 9009379 G C USP7 Missense_Mutation p.L304V 0.08 deleterious(0) probably_damaging(0.979) TCGA-XF-A9SZ-01 17 19319165 19319165 G T RNF112 Nonsense_Mutation p.E525* 0.16 TCGA-XF-A9SZ-01 17 2310283 2310283 G A AC006435.1 3'UTR 0.23 TCGA-XF-A9SZ-01 17 27448119 27448119 G A MYO18A Silent p.I494I 0.26 TCGA-XF-A9SZ-01 17 28598325 28598325 C T BLMH Missense_Mutation p.M370I 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9SZ-01 17 32961879 32961879 C A TMEM132E Missense_Mutation p.R494S 0.11 deleterious(0.01) probably_damaging(0.939) TCGA-XF-A9SZ-01 17 34851201 34851201 G A ZNHIT3 Missense_Mutation p.D141N 0.14 deleterious(0.02) benign(0.079) TCGA-XF-A9SZ-01 17 3665214 3665214 C G ITGAE Missense_Mutation p.V104L 0.17 deleterious(0.02) benign(0.037) TCGA-XF-A9SZ-01 17 3984695 3984695 G C ZZEF1 Missense_Mutation p.T935S 0.29 tolerated(0.11) benign(0.142) TCGA-XF-A9SZ-01 17 40042447 40042447 C A ACLY Nonsense_Mutation p.G664* 0.16 TCGA-XF-A9SZ-01 17 40262908 40262908 C T DHX58 Missense_Mutation p.E132K 0.27 deleterious(0) probably_damaging(0.998) TCGA-XF-A9SZ-01 17 41598226 41598226 G C DHX8 Missense_Mutation p.Q1015H 0.13 deleterious(0.01) probably_damaging(0.984) TCGA-XF-A9SZ-01 17 42849017 42849017 C G ADAM11 Silent p.L149L 0.15 TCGA-XF-A9SZ-01 17 42957998 42957998 G A EFTUD2 Silent p.I181I 0.22 TCGA-XF-A9SZ-01 17 47247101 47247101 G T B4GALNT2 3'UTR 0.19 TCGA-XF-A9SZ-01 17 61466810 61466810 G A TANC2 Missense_Mutation p.D912N 0.14 tolerated(0.2) benign(0.241) TCGA-XF-A9SZ-01 17 70119082 70119082 G A SOX9 Missense_Mutation p.M218I 0.17 tolerated(0.3) benign(0.002) TCGA-XF-A9SZ-01 17 73942805 73942805 G A ACOX1 3'UTR 0.32 TCGA-XF-A9SZ-01 17 7578463 7578463 C G TP53 Missense_Mutation p.R156P 0.24 tolerated(0.22) probably_damaging(0.994) TCGA-XF-A9SZ-01 18 14542963 14542963 C A POTEC Missense_Mutation p.M61I 0.06 deleterious_low_confidence(0) benign(0.019) TCGA-XF-A9SZ-01 18 179008 179008 G T USP14 Missense_Mutation p.D91Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SZ-01 18 706545 706545 C T ENOSF1 Missense_Mutation p.V61I 0.05 tolerated(0.57) benign(0.007) TCGA-XF-A9SZ-01 18 9254553 9254553 G C ANKRD12 Missense_Mutation p.D430H 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9SZ-01 19 12244622 12244622 C G ZNF20 Missense_Mutation p.D127H 0.20 tolerated(1) benign(0.001) TCGA-XF-A9SZ-01 19 13227039 13227039 C T TRMT1 Missense_Mutation p.E59K 0.22 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SZ-01 19 17945741 17945741 C G JAK3 Missense_Mutation p.D707H 0.23 deleterious(0) probably_damaging(0.995) TCGA-XF-A9SZ-01 19 17945958 17945958 C G JAK3 Missense_Mutation p.D661H 0.12 deleterious(0.02) possibly_damaging(0.748) TCGA-XF-A9SZ-01 19 18870884 18870884 G T CRTC1 Silent p.G260G 0.14 TCGA-XF-A9SZ-01 19 20828492 20828492 G A ZNF626 Missense_Mutation p.S75L 0.17 tolerated(0.06) benign(0.031) TCGA-XF-A9SZ-01 19 3462866 3462866 G A NFIC 3'UTR 0.25 TCGA-XF-A9SZ-01 19 36884959 36884959 C T ZFP82 Missense_Mutation p.E95K 0.12 tolerated(0.05) benign(0.011) TCGA-XF-A9SZ-01 19 40580734 40580734 G A ZNF780A Missense_Mutation p.R540C 0.20 tolerated(0.07) possibly_damaging(0.901) TCGA-XF-A9SZ-01 19 44351392 44351392 G T ZNF283 Silent p.G213G 0.16 TCGA-XF-A9SZ-01 19 4817272 4817272 G C TICAM1 Nonsense_Mutation p.S373* 0.21 TCGA-XF-A9SZ-01 19 54403565 54403565 G A PRKCG Missense_Mutation p.E454K 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SZ-01 19 57065244 57065244 C G ZFP28 Missense_Mutation p.H364D 0.35 tolerated(0.11) benign(0.013) TCGA-XF-A9SZ-01 19 5843985 5843985 G A FUT3 Missense_Mutation p.A289V 0.13 deleterious(0) probably_damaging(0.994) TCGA-XF-A9SZ-01 1 11882828 11882828 C T CLCN6 Silent p.V141V 0.13 TCGA-XF-A9SZ-01 1 12169631 12169631 C T TNFRSF8 Nonsense_Mutation p.Q144* 0.13 TCGA-XF-A9SZ-01 1 145584513 145584513 G C PIAS3 Missense_Mutation p.V494L 0.17 deleterious(0.03) benign(0.082) TCGA-XF-A9SZ-01 1 147231263 147231263 G C GJA5 Silent p.V28V 0.07 TCGA-XF-A9SZ-01 1 151001403 151001403 G A PRUNE Missense_Mutation p.V306M 0.20 tolerated(0.12) benign(0.039) TCGA-XF-A9SZ-01 1 15812539 15812539 A T CELA2B Missense_Mutation p.N213Y 0.04 tolerated(0.06) benign(0.08) TCGA-XF-A9SZ-01 1 161163164 161163164 C G ADAMTS4 Missense_Mutation p.E584Q 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-XF-A9SZ-01 1 171765732 171765732 G A METTL13 Missense_Mutation p.V646M 0.13 deleterious(0) probably_damaging(0.989) TCGA-XF-A9SZ-01 1 182920577 182920577 C T SHCBP1L Missense_Mutation p.G144D 0.04 tolerated(0.05) benign(0.075) TCGA-XF-A9SZ-01 1 183514167 183514167 A T SMG7 Missense_Mutation p.Q651L 0.13 deleterious_low_confidence(0) benign(0.432) TCGA-XF-A9SZ-01 1 186039774 186039774 G - HMCN1 Frame_Shift_Del p.P2677Qfs*8 0.31 TCGA-XF-A9SZ-01 1 197390736 197390736 C T CRB1 Missense_Mutation p.A593V 0.17 tolerated(0.25) benign(0.104) TCGA-XF-A9SZ-01 1 198721821 198721821 C T PTPRC Silent p.V1143V 0.25 TCGA-XF-A9SZ-01 1 200613642 200613642 C T DDX59 Missense_Mutation p.G534R 0.19 deleterious(0) probably_damaging(0.98) TCGA-XF-A9SZ-01 1 202107111 202107111 C A ARL8A Missense_Mutation p.R87L 0.12 deleterious(0) possibly_damaging(0.83) TCGA-XF-A9SZ-01 1 202894326 202894326 G C KLHL12 5'UTR 0.16 TCGA-XF-A9SZ-01 1 203024583 203024583 C A PPFIA4 Missense_Mutation p.S112Y 0.16 deleterious(0) probably_damaging(0.987) TCGA-XF-A9SZ-01 1 204588539 204588539 G A LRRN2 Silent p.L194L 0.22 TCGA-XF-A9SZ-01 1 205211077 205211077 C T TMCC2 Missense_Mutation p.P218S 0.31 deleterious(0.05) benign(0.423) TCGA-XF-A9SZ-01 1 208072572 208072572 C G CD34 Splice_Site p.X88_splice 0.20 TCGA-XF-A9SZ-01 1 214170329 214170329 C A PROX1 Missense_Mutation p.Q151K 0.17 tolerated(0.32) benign(0.154) TCGA-XF-A9SZ-01 1 214549651 214549651 G A PTPN14 Missense_Mutation p.R940C 0.23 tolerated(0.05) benign(0.106) TCGA-XF-A9SZ-01 1 220363789 220363789 G A RAB3GAP2 Nonsense_Mutation p.Q521* 0.22 TCGA-XF-A9SZ-01 1 220953510 220953510 G T MARC2 Missense_Mutation p.R271S 0.05 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 1 231334897 231334897 G C TRIM67 Missense_Mutation p.E415D 0.14 tolerated(0.09) benign(0.057) TCGA-XF-A9SZ-01 1 234565319 234565319 G A TARBP1 Missense_Mutation p.T905I 0.21 tolerated(0.41) benign(0.003) TCGA-XF-A9SZ-01 1 248814182 248814182 C T OR2T27 Missense_Mutation p.E2K 0.19 tolerated(0.29) benign(0.15) TCGA-XF-A9SZ-01 1 27106692 27106692 C - ARID1A Frame_Shift_Del p.S2104Pfs*31 0.28 TCGA-XF-A9SZ-01 1 35365762 35365762 C G DLGAP3 Missense_Mutation p.G407A 0.27 tolerated(0.14) benign(0.006) TCGA-XF-A9SZ-01 1 53792551 53792551 C A LRP8 Missense_Mutation p.D80Y 0.06 deleterious(0) probably_damaging(0.996) TCGA-XF-A9SZ-01 1 55074719 55074719 C G ACOT11 Intron 0.28 TCGA-XF-A9SZ-01 1 55075294 55075294 C T FAM151A Missense_Mutation p.E469K 0.40 tolerated(0.1) benign(0.081) TCGA-XF-A9SZ-01 1 87329109 87329109 T A SEP15 3'UTR 0.33 TCGA-XF-A9SZ-01 1 87379771 87379771 C T SEP15 Silent p.P5P 0.16 TCGA-XF-A9SZ-01 1 8921318 8921318 C A ENO1 3'UTR 0.31 TCGA-XF-A9SZ-01 20 21689911 21689911 C T PAX1 Missense_Mutation p.P371S 0.21 tolerated_low_confidence(0.09) benign(0.138) TCGA-XF-A9SZ-01 20 25456982 25456982 C T NINL Missense_Mutation p.R982Q 0.20 tolerated(0.61) benign(0.001) TCGA-XF-A9SZ-01 20 2847185 2847185 A C VPS16 Missense_Mutation p.I829L 0.28 tolerated(0.7) benign(0.04) TCGA-XF-A9SZ-01 20 31571720 31571720 C T SUN5 Silent p.V340V 0.14 TCGA-XF-A9SZ-01 20 32981678 32981678 C G ITCH Missense_Mutation p.Q21E 0.18 tolerated(0.33) benign(0.054) TCGA-XF-A9SZ-01 20 33033204 33033204 C G ITCH Missense_Mutation p.Q401E 0.06 deleterious(0.02) benign(0.434) TCGA-XF-A9SZ-01 20 37555013 37555013 G C FAM83D Missense_Mutation p.L6F 0.25 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-XF-A9SZ-01 20 44443105 44443105 G C UBE2C Missense_Mutation p.G71A 0.31 deleterious(0.05) benign(0.323) TCGA-XF-A9SZ-01 20 62572546 62572546 C T UCKL1 Silent p.S313S 0.23 TCGA-XF-A9SZ-01 21 40559205 40559205 A T BRWD1 Missense_Mutation p.V2237D 0.27 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-XF-A9SZ-01 21 42754398 42754398 C T MX2 Silent p.I213I 0.38 TCGA-XF-A9SZ-01 22 21065064 21065064 C T PI4KA Missense_Mutation p.M2002I 0.09 deleterious(0.02) possibly_damaging(0.756) TCGA-XF-A9SZ-01 22 44581705 44581705 C T PARVG Silent p.L33L 0.32 TCGA-XF-A9SZ-01 22 50552812 50552812 A G MOV10L1 Missense_Mutation p.N296S 0.34 deleterious(0) probably_damaging(0.925) TCGA-XF-A9SZ-01 2 103335151 103335151 A T MFSD9 Missense_Mutation p.S385T 0.18 deleterious(0.01) possibly_damaging(0.811) TCGA-XF-A9SZ-01 2 118583845 118583845 G A DDX18 Missense_Mutation p.E508K 0.25 deleterious(0) probably_damaging(0.969) TCGA-XF-A9SZ-01 2 122005742 122005742 G A TFCP2L1 Nonsense_Mutation p.Q168* 0.33 TCGA-XF-A9SZ-01 2 164466680 164466680 T C FIGN Silent p.G554G 0.35 TCGA-XF-A9SZ-01 2 179447897 179447897 C T TTN Missense_Mutation p.G21878E 0.21 TCGA-XF-A9SZ-01 2 206581043 206581043 C T NRP2 Silent p.S126S 0.18 TCGA-XF-A9SZ-01 2 207174506 207174506 T G ZDBF2 Missense_Mutation p.C1752G 0.27 tolerated(0.75) benign(0.227) TCGA-XF-A9SZ-01 2 216236758 216236758 G T FN1 Silent p.L2196L 0.17 TCGA-XF-A9SZ-01 2 218992 218992 T A SH3YL1 Missense_Mutation p.N283I 0.33 tolerated(0.07) benign(0.035) TCGA-XF-A9SZ-01 2 219414542 219414542 G C USP37 Nonsense_Mutation p.S140* 0.13 TCGA-XF-A9SZ-01 2 234357951 234357951 G C DGKD Missense_Mutation p.R606P 0.24 deleterious(0.01) possibly_damaging(0.887) TCGA-XF-A9SZ-01 2 37484060 37484060 C T PRKD3 Missense_Mutation p.D720N 0.07 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SZ-01 2 38178591 38178591 C G RMDN2 Missense_Mutation p.S78C 0.44 deleterious_low_confidence(0) possibly_damaging(0.865) TCGA-XF-A9SZ-01 2 60773252 60773252 G C BCL11A Missense_Mutation p.A80G 0.40 tolerated(1) benign(0.01) TCGA-XF-A9SZ-01 2 61622071 61622071 G C USP34 Missense_Mutation p.L224V 0.18 tolerated(0.36) probably_damaging(0.931) TCGA-XF-A9SZ-01 2 7003614 7003614 G A CMPK2 Silent p.I257I 0.54 TCGA-XF-A9SZ-01 2 73518588 73518588 G C EGR4 Silent p.L589L 0.14 TCGA-XF-A9SZ-01 2 75907339 75907339 C A GCFC2 Nonsense_Mutation p.E598* 0.14 TCGA-XF-A9SZ-01 2 86355070 86355070 C T PTCD3 Missense_Mutation p.S368L 0.23 deleterious(0) probably_damaging(0.957) TCGA-XF-A9SZ-01 2 97506631 97506631 C G ANKRD23 Missense_Mutation p.V107L 0.17 tolerated(1) benign(0.001) TCGA-XF-A9SZ-01 2 99858916 99858916 C G LYG2 Missense_Mutation p.E184Q 0.22 tolerated(0.12) possibly_damaging(0.609) TCGA-XF-A9SZ-01 3 120469615 120469615 C G GTF2E1 Missense_Mutation p.I72M 0.39 deleterious(0) possibly_damaging(0.882) TCGA-XF-A9SZ-01 3 121151139 121151139 T G POLQ 3'UTR 0.20 TCGA-XF-A9SZ-01 3 13655526 13655526 G A FBLN2 Missense_Mutation p.E531K 0.12 deleterious(0) probably_damaging(0.916) TCGA-XF-A9SZ-01 3 15117186 15117186 G C ZFYVE20 Missense_Mutation p.T378S 0.18 tolerated(0.11) possibly_damaging(0.748) TCGA-XF-A9SZ-01 3 15117187 15117187 T A ZFYVE20 Missense_Mutation p.T378S 0.19 tolerated(0.11) possibly_damaging(0.748) TCGA-XF-A9SZ-01 3 156983396 156983396 G A VEPH1 Silent p.V728V 0.14 TCGA-XF-A9SZ-01 3 169540051 169540051 C T LRRIQ4 Silent p.V114V 0.27 TCGA-XF-A9SZ-01 3 169540084 169540084 C G LRRIQ4 Silent p.L125L 0.31 TCGA-XF-A9SZ-01 3 18436385 18436385 G A SATB1 Silent p.L259L 0.12 TCGA-XF-A9SZ-01 3 184910298 184910298 C T EHHADH Missense_Mutation p.E630K 0.05 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 3 191179077 191179077 C - PYDC2 Frame_Shift_Del p.Q44Rfs*4 0.09 TCGA-XF-A9SZ-01 3 194790470 194790470 A T XXYLT1 Missense_Mutation p.C386S 0.05 deleterious(0) probably_damaging(0.989) TCGA-XF-A9SZ-01 3 197702971 197702971 C G LMLN Missense_Mutation p.I140M 0.19 deleterious(0) probably_damaging(0.935) TCGA-XF-A9SZ-01 3 33454295 33454295 C T UBP1 Missense_Mutation p.D123N 0.24 deleterious(0.04) probably_damaging(0.995) TCGA-XF-A9SZ-01 3 49751580 49751580 G A RNF123 Missense_Mutation p.E995K 0.15 tolerated(0.26) benign(0.031) TCGA-XF-A9SZ-01 4 123202692 123202692 C A KIAA1109 Missense_Mutation p.P2934T 0.19 benign(0.001) TCGA-XF-A9SZ-01 4 1244826 1244826 G T CTBP1 5'Flank 0.28 TCGA-XF-A9SZ-01 4 126369949 126369949 C G FAT4 Missense_Mutation p.S2593C 0.19 probably_damaging(1) TCGA-XF-A9SZ-01 4 141489055 141489055 G C UCP1 Missense_Mutation p.T68R 0.27 tolerated(0.08) possibly_damaging(0.864) TCGA-XF-A9SZ-01 4 15512927 15512927 G C CC2D2A Missense_Mutation p.D200H 0.23 deleterious(0) probably_damaging(0.978) TCGA-XF-A9SZ-01 4 171008322 171008322 C G AADAT Missense_Mutation p.S105T 0.19 tolerated(0.2) benign(0.002) TCGA-XF-A9SZ-01 4 186299383 186299383 A T LRP2BP 5'UTR 0.23 TCGA-XF-A9SZ-01 4 38698711 38698711 C T KLF3 Missense_Mutation p.P289S 0.24 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 4 57873166 57873166 C G POLR2B Missense_Mutation p.Q468E 0.11 deleterious(0) probably_damaging(0.997) TCGA-XF-A9SZ-01 4 5803707 5803707 G A EVC Missense_Mutation p.V779I 0.23 deleterious(0) benign(0.274) TCGA-XF-A9SZ-01 4 73944483 73944483 C T ANKRD17 Silent p.G2428G 0.27 TCGA-XF-A9SZ-01 4 87689001 87689001 C G PTPN13 Missense_Mutation p.S1459C 0.27 tolerated(0.21) possibly_damaging(0.611) TCGA-XF-A9SZ-01 4 89597515 89597515 A G HERC3 Missense_Mutation p.I656V 0.14 tolerated(1) benign(0.001) TCGA-XF-A9SZ-01 5 110712638 110712638 T C CAMK4 Silent p.D128D 0.35 TCGA-XF-A9SZ-01 5 11397272 11397272 T C CTNND2 Silent p.K161K 0.25 TCGA-XF-A9SZ-01 5 114469674 114469674 T C TRIM36 Missense_Mutation p.K473E 0.28 tolerated(0.23) benign(0.022) TCGA-XF-A9SZ-01 5 126860478 126860478 T - PRRC1 Frame_Shift_Del p.L121Yfs*34 0.17 TCGA-XF-A9SZ-01 5 149460538 149460538 C A CSF1R Missense_Mutation p.K33N 0.40 tolerated(0.73) benign(0.158) TCGA-XF-A9SZ-01 5 158526363 158526363 C A EBF1 Missense_Mutation p.A42S 0.37 tolerated_low_confidence(0.28) benign(0.019) TCGA-XF-A9SZ-01 5 178413693 178413693 G A GRM6 Missense_Mutation p.P521L 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-XF-A9SZ-01 5 35860958 35860958 C T IL7R Silent p.D29D 0.23 TCGA-XF-A9SZ-01 5 41196033 41196033 G C C6 Missense_Mutation p.R150G 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 5 45262225 45262225 C G HCN1 Missense_Mutation p.G824A 0.30 tolerated_low_confidence(0.17) benign(0.001) TCGA-XF-A9SZ-01 5 54468427 54468427 C G CDC20B Missense_Mutation p.D39H 0.24 tolerated(0.61) benign(0.001) TCGA-XF-A9SZ-01 5 79617033 79617033 G C SPZ1 Missense_Mutation p.Q333H 0.27 tolerated(0.2) benign(0.111) TCGA-XF-A9SZ-01 6 10877388 10877388 G C GCM2 Missense_Mutation p.R110G 0.27 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 6 143825312 143825312 C T FUCA2 Missense_Mutation p.E164K 0.19 deleterious(0) possibly_damaging(0.808) TCGA-XF-A9SZ-01 6 146351187 146351187 C T GRM1 Silent p.F178F 0.35 TCGA-XF-A9SZ-01 6 27100998 27100998 G T HIST1H2AG Missense_Mutation p.V50L 0.17 deleterious_low_confidence(0) possibly_damaging(0.565) TCGA-XF-A9SZ-01 6 29275348 29275348 C T OR14J1 Silent p.S294S 0.37 TCGA-XF-A9SZ-01 6 31544556 31544556 G A TNF Missense_Mutation p.R82Q 0.42 tolerated(0.68) benign(0.007) TCGA-XF-A9SZ-01 6 32029325 32029325 G A TNXB Silent p.D2447D 0.25 TCGA-XF-A9SZ-01 6 32029327 32029327 C T TNXB Missense_Mutation p.D2447N 0.25 benign(0.104) TCGA-XF-A9SZ-01 6 33380050 33380050 C - PHF1 Frame_Shift_Del p.R6Gfs*2 0.32 TCGA-XF-A9SZ-01 6 33409085 33409085 C T SYNGAP1 Silent p.I683I 0.12 TCGA-XF-A9SZ-01 6 43268992 43268992 A G SLC22A7 Missense_Mutation p.Q316R 0.18 tolerated(0.57) benign(0.005) TCGA-XF-A9SZ-01 6 46658275 46658275 G A TDRD6 Missense_Mutation p.D804N 0.24 tolerated(0.46) benign(0.031) TCGA-XF-A9SZ-01 6 57075166 57075166 C G RAB23 Missense_Mutation p.D5H 0.04 deleterious(0) probably_damaging(0.985) TCGA-XF-A9SZ-01 6 76024849 76024849 G A FILIP1 Silent p.L233L 0.24 TCGA-XF-A9SZ-01 6 97561929 97561929 G A KLHL32 Missense_Mutation p.E300K 0.20 tolerated(0.07) probably_damaging(0.991) TCGA-XF-A9SZ-01 7 103008521 103008521 G A PSMC2 3'UTR 0.24 TCGA-XF-A9SZ-01 7 133812147 133812147 G A LRGUK Silent p.L9L 0.16 TCGA-XF-A9SZ-01 7 149558883 149558883 A T ZNF862 Silent p.A878A 0.28 TCGA-XF-A9SZ-01 7 27237896 27237896 T A HOXA13 Missense_Mutation p.E363V 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 7 27237897 27237897 C T HOXA13 Missense_Mutation p.E363K 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A9SZ-01 7 28610060 28610060 C T CREB5 Silent p.P123P 0.36 TCGA-XF-A9SZ-01 7 6731119 6731119 C G ZNF12 Missense_Mutation p.R485T 0.25 deleterious(0.01) probably_damaging(1) TCGA-XF-A9SZ-01 7 6731191 6731191 C G ZNF12 Missense_Mutation p.G461A 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9SZ-01 7 82595458 82595458 C T PCLO Missense_Mutation p.E1216K 0.18 unknown(0) TCGA-XF-A9SZ-01 7 94540585 94540585 C G PPP1R9A Nonsense_Mutation p.S387* 0.16 TCGA-XF-A9SZ-01 8 11637387 11637387 G A NEIL2 Missense_Mutation p.S140N 0.06 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 8 12943254 12943254 C G DLC1 3'UTR 0.14 TCGA-XF-A9SZ-01 8 145139047 145139047 G A GPAA1 Silent p.S209S 0.18 TCGA-XF-A9SZ-01 8 145736098 145736098 C G MFSD3 Missense_Mutation p.I316M 0.17 tolerated(0.22) benign(0.02) TCGA-XF-A9SZ-01 8 145737107 145737107 C T RECQL4 Silent p.E1153E 0.14 TCGA-XF-A9SZ-01 8 145737112 145737112 C T RECQL4 Missense_Mutation p.E1152K 0.12 deleterious(0) benign(0.027) TCGA-XF-A9SZ-01 8 145738236 145738236 C G RECQL4 Missense_Mutation p.E917Q 0.27 tolerated(0.12) benign(0.251) TCGA-XF-A9SZ-01 8 38810169 38810169 C T PLEKHA2 Missense_Mutation p.R217C 0.40 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 8 59488493 59488493 T C SDCBP Missense_Mutation p.M92T 0.10 deleterious(0.03) benign(0.097) TCGA-XF-A9SZ-01 8 67049350 67049350 C T TRIM55 Silent p.I176I 0.24 TCGA-XF-A9SZ-01 8 70981719 70981719 C T PRDM14 Missense_Mutation p.S126N 0.16 tolerated(0.18) benign(0.001) TCGA-XF-A9SZ-01 8 87479049 87479049 A G WWP1 Missense_Mutation p.Y899C 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 9 134501607 134501607 A G RAPGEF1 Silent p.D469D 0.29 TCGA-XF-A9SZ-01 9 139350570 139350570 C T SEC16A Missense_Mutation p.E1867K 0.24 deleterious(0) probably_damaging(0.942) TCGA-XF-A9SZ-01 9 139929399 139929399 G A C9orf139 Missense_Mutation p.E156K 0.20 tolerated_low_confidence(0.12) possibly_damaging(0.486) TCGA-XF-A9SZ-01 9 27950205 27950205 C T LINGO2 Silent p.L155L 0.25 TCGA-XF-A9SZ-01 9 70871869 70871869 G T CBWD3 Nonsense_Mutation p.E155* 0.09 TCGA-XF-A9SZ-01 9 7128148 7128148 G C KDM4C Missense_Mutation p.R898T 0.21 tolerated(0.14) benign(0.075) TCGA-XF-A9SZ-01 9 78547292 78547292 C A PCSK5 Intron 0.15 TCGA-XF-A9SZ-01 9 86571283 86571283 G A C9orf64 Missense_Mutation p.R45C 0.17 deleterious(0.04) benign(0.002) TCGA-XF-A9SZ-01 X 100911087 100911087 C A ARMCX2 Missense_Mutation p.M496I 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9SZ-01 X 134706853 134706853 A T DDX26B Missense_Mutation p.K467N 0.14 tolerated(0.17) probably_damaging(0.966) TCGA-XF-A9SZ-01 X 144906442 144906442 C T SLITRK2 Silent p.L833L 0.40 TCGA-XF-A9SZ-01 X 152815128 152815128 G A ATP2B3 Silent p.L504L 0.60 TCGA-XF-A9SZ-01 X 153069223 153069223 C A PDZD4 Missense_Mutation p.G632V 0.49 deleterious(0) probably_damaging(1) TCGA-XF-A9SZ-01 X 2692778 2692778 C T XG Missense_Mutation p.S42L 0.19 deleterious(0.02) possibly_damaging(0.765) TCGA-XF-A9SZ-01 X 2838727 2838727 C A ARSD Missense_Mutation p.W118C 0.28 deleterious(0.01) probably_damaging(0.967) TCGA-XF-A9SZ-01 X 31838153 31838153 T A DMD Missense_Mutation p.L2416F 0.35 benign(0.065) TCGA-XF-A9SZ-01 X 43590500 43590500 G A MAOA Missense_Mutation p.V220I 0.42 tolerated(0.31) benign(0.006) TCGA-XF-A9SZ-01 X 47030649 47030649 G A RBM10 Missense_Mutation p.E142K 0.81 tolerated(0.06) probably_damaging(0.989) TCGA-XF-A9SZ-01 X 47446150 47446150 T C TIMP1 3'UTR 0.11 TCGA-XF-A9SZ-01 X 53611145 53611145 C T HUWE1 Splice_Site p.X1721_splice 0.44 TCGA-XF-A9T0-01 10 100150686 100150686 G A PYROXD2 Intron 0.46 TCGA-XF-A9T0-01 10 102045947 102045947 C T BLOC1S2 Missense_Mutation p.E27K 0.33 tolerated(0.51) benign(0.008) TCGA-XF-A9T0-01 10 102049817 102049817 C T PKD2L1 Silent p.L735L 0.37 TCGA-XF-A9T0-01 10 102286789 102286789 C T NDUFB8 Silent p.E85E 0.43 TCGA-XF-A9T0-01 10 102684581 102684581 T C FAM178A Missense_Mutation p.L608S 0.34 deleterious(0.05) probably_damaging(0.987) TCGA-XF-A9T0-01 10 104353768 104353768 G A SUFU Silent p.L234L 0.41 TCGA-XF-A9T0-01 10 104404828 104404828 C T TRIM8 Missense_Mutation p.R152C 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-XF-A9T0-01 10 104865528 104865528 A G NT5C2 Silent p.N108N 0.38 TCGA-XF-A9T0-01 10 106974295 106974295 T C SORCS3 Missense_Mutation p.L824P 0.07 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T0-01 10 112653878 112653878 C T PDCD4 Silent p.L340L 0.36 TCGA-XF-A9T0-01 10 114710569 114710569 G A TCF7L2 Silent p.L18L 0.25 TCGA-XF-A9T0-01 10 115607065 115607065 A C DCLRE1A Missense_Mutation p.Y719D 0.45 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 10 116590650 116590650 C T FAM160B1 Missense_Mutation p.H29Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T0-01 10 117884845 117884845 G C GFRA1 Missense_Mutation p.I219M 0.17 tolerated(0.12) benign(0.002) TCGA-XF-A9T0-01 10 123279496 123279496 G A FGFR2 Silent p.L312L 0.39 TCGA-XF-A9T0-01 10 124591816 124591816 T - CUZD1 Frame_Shift_Del p.Y601Sfs*9 0.28 TCGA-XF-A9T0-01 10 128193261 128193261 C T C10orf90 Missense_Mutation p.E170K 0.38 tolerated(0.83) benign(0.003) TCGA-XF-A9T0-01 10 129839166 129839166 C T PTPRE Silent p.L7L 0.24 TCGA-XF-A9T0-01 10 129845659 129845659 C T PTPRE Missense_Mutation p.P39S 0.55 tolerated_low_confidence(0.12) benign(0.001) TCGA-XF-A9T0-01 10 135160866 135160866 T C PRAP1 5'UTR 0.45 TCGA-XF-A9T0-01 10 135367715 135367715 T A SYCE1 3'Flank 0.36 TCGA-XF-A9T0-01 10 24832874 24832874 G A KIAA1217 Missense_Mutation p.E1559K 0.31 tolerated(0.21) benign(0) TCGA-XF-A9T0-01 10 27324214 27324214 T A ANKRD26 Silent p.L1055L 0.35 TCGA-XF-A9T0-01 10 27337905 27337905 C T ANKRD26 Missense_Mutation p.E547K 0.40 tolerated(0.18) benign(0.11) TCGA-XF-A9T0-01 10 30987369 30987369 C T SVILP1 RNA 0.53 TCGA-XF-A9T0-01 10 3161037 3161037 G A PFKP Silent p.A502A 0.37 TCGA-XF-A9T0-01 10 33619689 33619689 C T NRP1 Silent p.Q65Q 0.36 TCGA-XF-A9T0-01 10 35103843 35103843 G A PARD3 Silent p.I27I 0.60 TCGA-XF-A9T0-01 10 50121292 50121292 G A WDFY4 Intron 0.38 TCGA-XF-A9T0-01 10 52751241 52751241 G A PRKG1 Missense_Mutation p.E35K 0.47 tolerated(0.88) benign(0.001) TCGA-XF-A9T0-01 10 54053730 54053730 G A PRKG1 3'UTR 0.60 TCGA-XF-A9T0-01 10 55663041 55663041 C T PCDH15 Missense_Mutation p.E1155K 0.51 tolerated(0.07) probably_damaging(1) TCGA-XF-A9T0-01 10 5791921 5791941 GGCTTGTAAAAGTACCTTCCT - FAM208B In_Frame_Del p.A2180_L2186del 0.36 TCGA-XF-A9T0-01 10 58119821 58119821 T C ZWINT Missense_Mutation p.T72A 0.42 tolerated(0.19) benign(0.115) TCGA-XF-A9T0-01 10 64974053 64974053 G A JMJD1C Missense_Mutation p.S625F 0.31 deleterious(0) possibly_damaging(0.474) TCGA-XF-A9T0-01 10 69672699 69672699 A C SIRT1 Missense_Mutation p.E609A 0.37 tolerated(0.09) benign(0.025) TCGA-XF-A9T0-01 10 70706216 70706216 T C DDX50 Missense_Mutation p.W682R 0.48 tolerated(0.4) unknown(0) TCGA-XF-A9T0-01 10 73766945 73766945 G C CHST3 Silent p.L52L 0.44 TCGA-XF-A9T0-01 10 74833502 74833502 C G P4HA1 Missense_Mutation p.E54Q 0.37 tolerated(0.3) benign(0.052) TCGA-XF-A9T0-01 10 76602843 76602843 C T KAT6B Silent p.N76N 0.41 TCGA-XF-A9T0-01 10 8007337 8007337 G C TAF3 Missense_Mutation p.D622H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-XF-A9T0-01 10 8007618 8007618 G C TAF3 Missense_Mutation p.E715D 0.45 tolerated_low_confidence(0.34) benign(0.217) TCGA-XF-A9T0-01 10 81058274 81058274 G A ZMIZ1 Missense_Mutation p.D535N 0.27 benign(0.367) TCGA-XF-A9T0-01 10 81065869 81065869 A G ZMIZ1 Silent p.E812E 0.36 TCGA-XF-A9T0-01 10 88197319 88197319 T G WAPAL Missense_Mutation p.E1185A 0.45 deleterious(0.01) benign(0.437) TCGA-XF-A9T0-01 10 88728250 88728250 G A ADIRF 5'UTR 0.40 TCGA-XF-A9T0-01 10 88768307 88768307 G A RP11-96C23.10 3'Flank 0.39 TCGA-XF-A9T0-01 10 93389801 93389801 C T PPP1R3C Silent p.Q279Q 0.43 TCGA-XF-A9T0-01 10 97154370 97154370 T C SORBS1 Missense_Mutation p.E453G 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.678) TCGA-XF-A9T0-01 10 97990573 97990573 C G BLNK Missense_Mutation p.E61Q 0.47 deleterious(0.02) possibly_damaging(0.653) TCGA-XF-A9T0-01 10 98273333 98273333 G A TLL2 Missense_Mutation p.S37L 0.35 tolerated_low_confidence(0.25) benign(0.028) TCGA-XF-A9T0-01 10 99358536 99358536 C T HOGA1 Silent p.F72F 0.36 TCGA-XF-A9T0-01 11 101834243 101834243 C G KIAA1377 Missense_Mutation p.P826R 0.36 deleterious(0.01) probably_damaging(0.923) TCGA-XF-A9T0-01 11 102272882 102272882 C T TMEM123 Silent p.V71V 0.38 TCGA-XF-A9T0-01 11 102935066 102935066 T C DCUN1D5 Missense_Mutation p.N199S 0.44 tolerated(0.29) possibly_damaging(0.773) TCGA-XF-A9T0-01 11 103092809 103092809 G A DYNC2H1 Missense_Mutation p.R3053Q 0.38 possibly_damaging(0.814) TCGA-XF-A9T0-01 11 105009571 105009571 G C CARD18 Missense_Mutation p.P81R 0.36 tolerated(0.43) benign(0.036) TCGA-XF-A9T0-01 11 105804634 105804634 G C GRIA4 Missense_Mutation p.V745L 0.17 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T0-01 11 108032376 108032376 G A NPAT Missense_Mutation p.S1146L 0.32 tolerated(0.17) benign(0.009) TCGA-XF-A9T0-01 11 110035165 110035165 G C ZC3H12C Missense_Mutation p.R452T 0.36 deleterious(0) benign(0.367) TCGA-XF-A9T0-01 11 111425307 111425307 G A LAYN Missense_Mutation p.R196K 0.28 tolerated(0.92) benign(0) TCGA-XF-A9T0-01 11 112064262 112064262 C G BCO2 Missense_Mutation p.T120R 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-XF-A9T0-01 11 119044556 119044556 G A NLRX1 Missense_Mutation p.E200K 0.45 tolerated(0.08) possibly_damaging(0.892) TCGA-XF-A9T0-01 11 11964064 11964064 G T USP47 Silent p.V764V 0.43 TCGA-XF-A9T0-01 11 121461754 121461754 C T SORL1 Silent p.L1420L 0.39 TCGA-XF-A9T0-01 11 124120462 124120462 C T OR8G1 Silent p.L14L 0.38 TCGA-XF-A9T0-01 11 124789836 124789836 G A HEPN1 Missense_Mutation p.E64K 0.36 tolerated_low_confidence(0.92) possibly_damaging(0.801) TCGA-XF-A9T0-01 11 126126539 126126539 C A FAM118B Missense_Mutation p.F258L 0.41 deleterious(0) probably_damaging(0.983) TCGA-XF-A9T0-01 11 1274062 1274062 G A MUC5B Silent p.E5023E 0.29 TCGA-XF-A9T0-01 11 130068449 130068449 G A ST14 Silent p.S539S 0.33 TCGA-XF-A9T0-01 11 130785632 130785647 CTGGAGCCCAGCCATC - SNX19 Frame_Shift_Del p.G63Afs*41 0.47 TCGA-XF-A9T0-01 11 133806027 133806027 G C IGSF9B Missense_Mutation p.L248V 0.48 deleterious(0.01) benign(0.234) TCGA-XF-A9T0-01 11 134179618 134179618 A G GLB1L3 Missense_Mutation p.T354A 0.48 tolerated(0.76) benign(0.012) TCGA-XF-A9T0-01 11 15096700 15096700 G A CALCB Missense_Mutation p.M60I 0.40 deleterious(0.02) benign(0.159) TCGA-XF-A9T0-01 11 1586967 1586967 G T DUSP8 Silent p.I30I 0.36 TCGA-XF-A9T0-01 11 1586981 1586981 C T DUSP8 Missense_Mutation p.G26R 0.43 tolerated(0.8) possibly_damaging(0.565) TCGA-XF-A9T0-01 11 17408784 17408784 G A KCNJ11 Silent p.V285V 0.45 TCGA-XF-A9T0-01 11 1860931 1860931 G C TNNI2 Missense_Mutation p.G2A 0.39 tolerated(0.31) benign(0.004) TCGA-XF-A9T0-01 11 19259528 19259528 G A E2F8 Missense_Mutation p.P56L 0.43 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 11 19259641 19259641 C G E2F8 Missense_Mutation p.M18I 0.37 tolerated(0.24) benign(0) TCGA-XF-A9T0-01 11 19261753 19261753 C G E2F8 5'UTR 0.50 TCGA-XF-A9T0-01 11 19914086 19914086 G A NAV2 Missense_Mutation p.D316N 0.27 deleterious(0.04) probably_damaging(0.993) TCGA-XF-A9T0-01 11 22647048 22647048 G A FANCF Silent p.L103L 0.38 TCGA-XF-A9T0-01 11 3026647 3026647 C T CARS Silent p.V722V 0.35 TCGA-XF-A9T0-01 11 4471445 4471445 A C OR52K2 Silent p.I292I 0.45 TCGA-XF-A9T0-01 11 45891636 45891636 C T CRY2 Silent p.F430F 0.44 TCGA-XF-A9T0-01 11 46105841 46105841 C T PHF21A 5'UTR 0.33 TCGA-XF-A9T0-01 11 46568822 46568822 C T AMBRA1 Silent p.V73V 0.42 TCGA-XF-A9T0-01 11 4703208 4703208 C T OR51E2 Missense_Mutation p.G245D 0.54 deleterious(0) benign(0.112) TCGA-XF-A9T0-01 11 5537230 5537230 G A UBQLNL Silent p.L148L 0.58 TCGA-XF-A9T0-01 11 55595242 55595242 C T OR5L2 Missense_Mutation p.P183L 0.31 deleterious(0.03) probably_damaging(0.958) TCGA-XF-A9T0-01 11 5618014 5618014 G A TRIM6-TRIM34 5'UTR 0.36 TCGA-XF-A9T0-01 11 56310276 56310276 G A OR5M11 Missense_Mutation p.S153L 0.54 tolerated(1) benign(0.02) TCGA-XF-A9T0-01 11 57077547 57077547 C T TNKS1BP1 Missense_Mutation p.D880N 0.39 deleterious(0.05) benign(0.022) TCGA-XF-A9T0-01 11 5776055 5776055 A G OR52N4 Missense_Mutation p.I29V 0.29 deleterious(0.03) benign(0.007) TCGA-XF-A9T0-01 11 58275001 58275001 C A OR5B21 Missense_Mutation p.S193I 0.24 tolerated_low_confidence(0.09) possibly_damaging(0.828) TCGA-XF-A9T0-01 11 59573819 59573819 A - MRPL16 3'UTR 0.30 TCGA-XF-A9T0-01 11 59828765 59828765 G A MS4A3 Silent p.Q44Q 0.30 TCGA-XF-A9T0-01 11 6023653 6023653 G A OR56A4 Silent p.L242L 0.27 TCGA-XF-A9T0-01 11 61070177 61070177 G A DDB1 Missense_Mutation p.L997F 0.39 tolerated(0.14) possibly_damaging(0.567) TCGA-XF-A9T0-01 11 613863 613863 C T IRF7 Missense_Mutation p.E270K 0.75 tolerated(0.72) benign(0.112) TCGA-XF-A9T0-01 11 61544787 61544787 G A MYRF Missense_Mutation p.A548T 0.34 tolerated(0.07) possibly_damaging(0.638) TCGA-XF-A9T0-01 11 61732348 61732348 C T FTH1 Missense_Mutation p.E135K 0.53 tolerated(0.07) benign(0.137) TCGA-XF-A9T0-01 11 644541 644541 G A DEAF1 3'UTR 0.39 TCGA-XF-A9T0-01 11 64645807 64645807 C T EHD1 Missense_Mutation p.E44K 0.43 tolerated(0.12) benign(0) TCGA-XF-A9T0-01 11 65320965 65320965 C T LTBP3 Missense_Mutation p.E301K 0.36 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 11 65546315 65546315 C T AP5B1 Missense_Mutation p.G550E 0.48 tolerated(0.64) benign(0.013) TCGA-XF-A9T0-01 11 65787672 65787672 C T CATSPER1 Splice_Site p.X689_splice 0.39 TCGA-XF-A9T0-01 11 66031186 66031186 C T KLC2 Missense_Mutation p.R270W 0.43 deleterious(0.02) probably_damaging(0.915) TCGA-XF-A9T0-01 11 6651347 6651347 G T DCHS1 Missense_Mutation p.P1560T 0.48 tolerated(0.4) benign(0.001) TCGA-XF-A9T0-01 11 6653031 6653031 G A DCHS1 Missense_Mutation p.T1164I 0.46 tolerated(0.22) benign(0.326) TCGA-XF-A9T0-01 11 68458502 68458502 C T GAL 3'UTR 0.58 TCGA-XF-A9T0-01 11 69489972 69489972 C T ORAOV1 Silent p.V12V 0.50 TCGA-XF-A9T0-01 11 70013389 70013389 A G ANO1 Missense_Mutation p.Q698R 0.35 tolerated(0.58) benign(0.003) TCGA-XF-A9T0-01 11 703000 703000 C T TMEM80 Silent p.L119L 0.46 TCGA-XF-A9T0-01 11 73677287 73677287 A C DNAJB13 Missense_Mutation p.E199D 0.59 deleterious(0) possibly_damaging(0.648) TCGA-XF-A9T0-01 11 75111510 75111510 C T RPS3 Intron 0.47 TCGA-XF-A9T0-01 11 7586921 7586921 C T PPFIBP2 Nonsense_Mutation p.Q68* 0.32 TCGA-XF-A9T0-01 11 76372111 76372111 C T LRRC32 Missense_Mutation p.E176K 0.35 tolerated(0.65) benign(0.038) TCGA-XF-A9T0-01 11 77991794 77991794 T G GAB2 Missense_Mutation p.K77Q 0.41 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T0-01 11 8705904 8705904 T G RPL27A Intron 0.37 TCGA-XF-A9T0-01 11 87883099 87883099 G A RAB38 Missense_Mutation p.T76M 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 11 88911263 88911263 C T TYR Nonsense_Mutation p.Q48* 0.51 TCGA-XF-A9T0-01 11 89531689 89531689 G T TRIM49 Missense_Mutation p.A323E 0.23 tolerated(1) benign(0.002) TCGA-XF-A9T0-01 11 89956069 89956069 G C CHORDC1 Silent p.T18T 0.35 TCGA-XF-A9T0-01 11 9459784 9459784 G A IPO7 Missense_Mutation p.E883K 0.53 tolerated(0.47) benign(0.003) TCGA-XF-A9T0-01 11 9459790 9459790 G A IPO7 Missense_Mutation p.D885N 0.54 tolerated(0.18) benign(0.006) TCGA-XF-A9T0-01 11 95712098 95712098 C T MAML2 3'UTR 0.62 TCGA-XF-A9T0-01 11 9610237 9610237 C T WEE1 3'UTR 0.40 TCGA-XF-A9T0-01 12 1006710 1006710 A C WNK1 Missense_Mutation p.K2104T 0.30 deleterious(0) possibly_damaging(0.818) TCGA-XF-A9T0-01 12 104370782 104370782 A C TDG Missense_Mutation p.E37A 0.35 deleterious_low_confidence(0.03) benign(0.002) TCGA-XF-A9T0-01 12 106729476 106729476 C G TCP11L2 Missense_Mutation p.L278V 0.32 tolerated(0.32) benign(0.006) TCGA-XF-A9T0-01 12 106804615 106804615 C T POLR3B Silent p.F326F 0.36 TCGA-XF-A9T0-01 12 109042596 109042596 C T CORO1C Missense_Mutation p.D364N 0.50 deleterious(0.04) possibly_damaging(0.808) TCGA-XF-A9T0-01 12 109537036 109537036 T C UNG Missense_Mutation p.Y128H 0.36 deleterious(0) probably_damaging(0.964) TCGA-XF-A9T0-01 12 112677687 112677687 G A HECTD4 Silent p.T1555T 0.41 TCGA-XF-A9T0-01 12 113737706 113737706 G A SLC8B1 Missense_Mutation p.S544L 0.30 tolerated(0.84) benign(0.012) TCGA-XF-A9T0-01 12 115114191 115114191 T C TBX3 Silent p.E342E 0.17 TCGA-XF-A9T0-01 12 115117407 115117407 C T TBX3 Missense_Mutation p.R256K 0.41 tolerated(0.1) possibly_damaging(0.551) TCGA-XF-A9T0-01 12 118517210 118517210 T G VSIG10 Missense_Mutation p.K289T 0.26 tolerated(0.05) benign(0.257) TCGA-XF-A9T0-01 12 119617367 119617367 G A HSPB8 Missense_Mutation p.E84K 0.27 tolerated(0.84) benign(0.021) TCGA-XF-A9T0-01 12 120660367 120660367 G A PXN Missense_Mutation p.S227F 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-XF-A9T0-01 12 121458561 121458561 T C OASL Missense_Mutation p.I450V 0.40 tolerated(0.58) benign(0.015) TCGA-XF-A9T0-01 12 121476582 121476582 C T OASL Missense_Mutation p.V65I 0.24 tolerated(0.13) benign(0.003) TCGA-XF-A9T0-01 12 121855412 121855412 C G RNF34 Missense_Mutation p.Q112E 0.38 tolerated(0.19) probably_damaging(0.928) TCGA-XF-A9T0-01 12 123047189 123047189 T G KNTC1 Missense_Mutation p.L516R 0.58 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T0-01 12 123380553 123380553 G A VPS37B Silent p.N19N 0.35 TCGA-XF-A9T0-01 12 123498520 123498520 C G PITPNM2 Missense_Mutation p.D50H 0.49 deleterious(0) probably_damaging(0.977) TCGA-XF-A9T0-01 12 123813348 123813348 G A SBNO1 Missense_Mutation p.S410F 0.43 deleterious(0) probably_damaging(0.974) TCGA-XF-A9T0-01 12 12588624 12588624 G T LOH12CR1 Missense_Mutation p.V89L 0.43 tolerated(0.46) benign(0.065) TCGA-XF-A9T0-01 12 130647569 130647569 C G FZD10 Missense_Mutation p.R28G 0.36 tolerated(0.13) possibly_damaging(0.873) TCGA-XF-A9T0-01 12 130851733 130851733 C T PIWIL1 Nonsense_Mutation p.Q751* 0.37 TCGA-XF-A9T0-01 12 13240196 13240196 A T GSG1 Silent p.G189G 0.47 TCGA-XF-A9T0-01 12 14927359 14927359 G A H2AFJ 5'UTR 0.48 TCGA-XF-A9T0-01 12 16109916 16109916 G A DERA Silent p.L26L 0.33 TCGA-XF-A9T0-01 12 19440464 19440464 A G PLEKHA5 Missense_Mutation p.S613G 0.33 deleterious(0.03) benign(0.003) TCGA-XF-A9T0-01 12 21172253 21172253 G T SLCO1B7 Missense_Mutation p.G53C 0.20 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 12 21699338 21699338 C G GYS2 Missense_Mutation p.V497L 0.46 deleterious(0) benign(0.301) TCGA-XF-A9T0-01 12 23689477 23689477 C T SOX5 Missense_Mutation p.C633Y 0.43 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T0-01 12 25264797 25264797 G A CASC1 Missense_Mutation p.T563I 0.11 deleterious(0) possibly_damaging(0.726) TCGA-XF-A9T0-01 12 26810991 26810991 A G ITPR2 Silent p.C653C 0.47 TCGA-XF-A9T0-01 12 2721208 2721208 C T CACNA1C Intron 0.28 TCGA-XF-A9T0-01 12 31231448 31231448 A G DDX11 Missense_Mutation p.I41V 0.40 deleterious(0.04) benign(0.081) TCGA-XF-A9T0-01 12 32949224 32949224 T A PKP2 Missense_Mutation p.T770S 0.44 deleterious(0) possibly_damaging(0.72) TCGA-XF-A9T0-01 12 41831568 41831568 C T PDZRN4 Intron 0.37 TCGA-XF-A9T0-01 12 42768746 42768746 T G PPHLN1 Missense_Mutation p.N127K 0.47 tolerated(0.14) benign(0.09) TCGA-XF-A9T0-01 12 46758898 46758898 C T SLC38A2 Missense_Mutation p.R213K 0.42 tolerated(1) benign(0.022) TCGA-XF-A9T0-01 12 48723250 48723250 G A H1FNT Missense_Mutation p.R59K 0.64 tolerated(1) benign(0) TCGA-XF-A9T0-01 12 49075218 49075218 C T KANSL2 Silent p.T66T 0.50 TCGA-XF-A9T0-01 12 49364094 49364094 C T WNT10B Missense_Mutation p.E39K 0.30 deleterious(0.01) benign(0.197) TCGA-XF-A9T0-01 12 50236650 50236650 C T BCDIN3D Missense_Mutation p.G74E 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T0-01 12 50474421 50474421 T C ASIC1 Missense_Mutation p.V449A 0.21 tolerated_low_confidence(0.6) benign(0.003) TCGA-XF-A9T0-01 12 50480416 50480416 G A SMARCD1 Silent p.K126K 0.28 TCGA-XF-A9T0-01 12 53084983 53084983 G A KRT77 Missense_Mutation p.S568F 0.37 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9T0-01 12 53096843 53096843 C T KRT77 Missense_Mutation p.G126S 0.27 tolerated(0.35) benign(0.13) TCGA-XF-A9T0-01 12 53496002 53496002 C T IGFBP6 3'UTR 0.33 TCGA-XF-A9T0-01 12 53775937 53775937 G A SP1 Missense_Mutation p.S69N 0.32 deleterious(0) possibly_damaging(0.483) TCGA-XF-A9T0-01 12 54423593 54423593 C T HOXC6 Silent p.I185I 0.40 TCGA-XF-A9T0-01 12 54797438 54797438 C G ITGA5 Missense_Mutation p.D583H 0.29 tolerated(0.24) possibly_damaging(0.639) TCGA-XF-A9T0-01 12 56982080 56982080 T C RBMS2 Silent p.Y355Y 0.41 TCGA-XF-A9T0-01 12 57110018 57110018 C T NACA Intron 0.33 TCGA-XF-A9T0-01 12 57920563 57920563 G A MBD6 Silent p.L545L 0.47 TCGA-XF-A9T0-01 12 65445215 65445215 C G WIF1 Missense_Mutation p.A352P 0.39 tolerated_low_confidence(0.11) benign(0.002) TCGA-XF-A9T0-01 12 667787 667787 G A B4GALNT3 Silent p.V907V 0.42 TCGA-XF-A9T0-01 12 66839160 66839160 C T GRIP1 Missense_Mutation p.E443K 0.39 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T0-01 12 72290516 72290516 G C TBC1D15 Missense_Mutation p.W365C 0.38 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 12 75874639 75874639 A C GLIPR1 5'UTR 0.50 TCGA-XF-A9T0-01 12 81101625 81101625 C T MYF6 Missense_Mutation p.P43S 0.41 tolerated(0.11) probably_damaging(0.999) TCGA-XF-A9T0-01 12 83379827 83379827 T G TMTC2 Splice_Site p.X690_splice 0.44 TCGA-XF-A9T0-01 12 88554612 88554612 C A TMTC3 Missense_Mutation p.L261I 0.37 deleterious(0.04) probably_damaging(0.919) TCGA-XF-A9T0-01 12 88589037 88589037 G A TMTC3 Missense_Mutation p.D786N 0.19 tolerated(0.16) benign(0.005) TCGA-XF-A9T0-01 12 90013866 90013866 G A ATP2B1 Missense_Mutation p.S580F 0.39 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 12 91347632 91347632 A G CCER1 Silent p.D296D 0.47 TCGA-XF-A9T0-01 12 92537910 92537910 G A BTG1 Silent p.L154L 0.45 TCGA-XF-A9T0-01 12 93805024 93805024 C T UBE2N Missense_Mutation p.D28N 0.43 tolerated(0.23) possibly_damaging(0.878) TCGA-XF-A9T0-01 12 94543561 94543561 G A PLXNC1 Missense_Mutation p.E272K 0.73 tolerated(0.69) benign(0.001) TCGA-XF-A9T0-01 12 95451519 95451522 CTAT - NR2C1 Frame_Shift_Del p.D226Vfs*10 0.12 TCGA-XF-A9T0-01 12 98989518 98989518 A G SLC25A3 Intron 0.41 TCGA-XF-A9T0-01 12 99139547 99139547 A G ANKS1B Intron 0.34 TCGA-XF-A9T0-01 13 113803832 113803832 G T F10 3'UTR 0.42 TCGA-XF-A9T0-01 13 20398612 20398612 G C ZMYM5 3'UTR 0.25 TCGA-XF-A9T0-01 13 21296024 21296024 C A IL17D Silent p.I180I 0.44 TCGA-XF-A9T0-01 13 23905561 23905561 C T SACS Missense_Mutation p.E4152K 0.39 probably_damaging(0.98) TCGA-XF-A9T0-01 13 23909987 23909987 T A SACS Silent p.T2676T 0.48 TCGA-XF-A9T0-01 13 25823447 25823447 C T MTMR6 Missense_Mutation p.E597K 0.47 tolerated_low_confidence(0.11) benign(0.164) TCGA-XF-A9T0-01 13 28130464 28130464 C A LNX2 Silent p.G485G 0.50 TCGA-XF-A9T0-01 13 33233412 33233412 C T PDS5B Missense_Mutation p.H207Y 0.41 tolerated(0.2) benign(0.006) TCGA-XF-A9T0-01 13 33320176 33320176 G A PDS5B Missense_Mutation p.E892K 0.37 deleterious(0.03) possibly_damaging(0.794) TCGA-XF-A9T0-01 13 36129146 36129146 C T NBEA Nonsense_Mutation p.R2277* 0.56 TCGA-XF-A9T0-01 13 41517240 41517240 G A ELF1 Silent p.L218L 0.28 TCGA-XF-A9T0-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.47 TCGA-XF-A9T0-01 13 49705286 49705286 A G FNDC3A Missense_Mutation p.N89S 0.32 tolerated(0.1) benign(0.418) TCGA-XF-A9T0-01 13 50092216 50092216 G A PHF11 Silent p.K129K 0.79 TCGA-XF-A9T0-01 13 51825991 51825991 G A FAM124A Missense_Mutation p.R199Q 0.67 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 13 52864031 52864031 C T RP11-248G5.8 RNA 0.23 TCGA-XF-A9T0-01 13 52952042 52952042 C T THSD1 Missense_Mutation p.C688Y 0.52 deleterious(0.02) benign(0.009) TCGA-XF-A9T0-01 13 67799573 67799573 T A PCDH9 Silent p.G1000G 0.21 TCGA-XF-A9T0-01 13 73396107 73396107 G A PIBF1 Missense_Mutation p.D265N 0.36 tolerated(0.08) possibly_damaging(0.484) TCGA-XF-A9T0-01 13 95829982 95829982 A T ABCC4 Missense_Mutation p.V569D 0.50 deleterious(0) probably_damaging(0.986) TCGA-XF-A9T0-01 13 96454000 96454000 G A UGGT2 3'UTR 0.28 TCGA-XF-A9T0-01 14 100992220 100992220 A G WDR25 Missense_Mutation p.Y372C 0.57 deleterious(0) probably_damaging(0.969) TCGA-XF-A9T0-01 14 105353210 105353210 A G CEP170B Silent p.P878P 0.78 TCGA-XF-A9T0-01 14 21967264 21967264 A C METTL3 Missense_Mutation p.H512Q 0.70 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T0-01 14 21967452 21967452 C T METTL3 Missense_Mutation p.E506K 0.77 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 14 65009353 65009353 G A HSPA2 Missense_Mutation p.E596K 0.67 deleterious_low_confidence(0.05) benign(0.033) TCGA-XF-A9T0-01 14 73753964 73753984 TGCTTGCGCTCTAAACAGGCT - NUMB In_Frame_Del p.A164_Q170del 0.82 TCGA-XF-A9T0-01 14 74180355 74180355 C T PNMA1 5'UTR 0.72 TCGA-XF-A9T0-01 14 74411338 74411338 C T FAM161B Missense_Mutation p.E272K 0.74 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T0-01 14 74759322 74759322 G A ABCD4 Silent p.L320L 0.80 TCGA-XF-A9T0-01 14 75747935 75747935 C A FOS Silent p.A317A 0.72 TCGA-XF-A9T0-01 14 77600252 77600252 A G ZDHHC22 Missense_Mutation p.L189P 0.73 deleterious(0) probably_damaging(0.979) TCGA-XF-A9T0-01 14 91142898 91142898 C T TTC7B Missense_Mutation p.G374E 0.85 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T0-01 14 93650050 93650050 C T MOAP1 Missense_Mutation p.E180K 0.82 tolerated(0.83) benign(0.236) TCGA-XF-A9T0-01 15 102358494 102358494 C T OR4F15 Silent p.Y35Y 0.25 TCGA-XF-A9T0-01 15 25959137 25959137 G A ATP10A Silent p.N676N 0.32 TCGA-XF-A9T0-01 15 28459805 28459805 G A HERC2 Silent p.L2118L 0.47 TCGA-XF-A9T0-01 15 35212583 35212583 G A AQR Missense_Mutation p.P391S 0.29 tolerated(0.71) benign(0.001) TCGA-XF-A9T0-01 15 35274341 35274341 T C ZNF770 Missense_Mutation p.D432G 0.51 tolerated(0.09) benign(0.011) TCGA-XF-A9T0-01 15 39875830 39875830 A G THBS1 Missense_Mutation p.N214D 0.27 tolerated(0.1) benign(0.108) TCGA-XF-A9T0-01 15 41071499 41071499 C T DNAJC17 Missense_Mutation p.D73N 0.38 tolerated(0.1) possibly_damaging(0.768) TCGA-XF-A9T0-01 15 41366603 41366603 C T INO80 Missense_Mutation p.G431E 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.744) TCGA-XF-A9T0-01 15 44105533 44105533 C T MFAP1 Missense_Mutation p.E214K 0.58 deleterious(0.03) possibly_damaging(0.449) TCGA-XF-A9T0-01 15 49170530 49170530 G A EID1 Missense_Mutation p.E53K 0.55 tolerated(0.76) benign(0.173) TCGA-XF-A9T0-01 15 50474726 50474726 G A SLC27A2 Silent p.L34L 0.30 TCGA-XF-A9T0-01 15 50769147 50769147 C T USP8 Silent p.V317V 0.28 TCGA-XF-A9T0-01 15 51791785 51791785 A G DMXL2 Silent p.A1212A 0.24 TCGA-XF-A9T0-01 15 54305999 54305999 G T UNC13C Missense_Mutation p.R300M 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XF-A9T0-01 15 55611487 55611487 G A PIGB Silent p.G13G 0.29 TCGA-XF-A9T0-01 15 58903285 58903285 C T ADAM10 Missense_Mutation p.E573K 0.19 tolerated(0.85) benign(0.191) TCGA-XF-A9T0-01 15 59179198 59179198 G A SLTM Silent p.I937I 0.29 TCGA-XF-A9T0-01 15 64445857 64445857 G A SNX22 Silent p.L122L 0.41 TCGA-XF-A9T0-01 15 65494368 65494368 C T CILP Splice_Site p.X343_splice 0.22 TCGA-XF-A9T0-01 15 65862542 65862542 G C PTPLAD1 Splice_Site p.X258_splice 0.30 TCGA-XF-A9T0-01 15 72152083 72152083 G A MYO9A Missense_Mutation p.S2049F 0.44 deleterious(0) possibly_damaging(0.642) TCGA-XF-A9T0-01 15 74427039 74427039 T G ISLR2 Silent p.R648R 0.27 TCGA-XF-A9T0-01 15 74494512 74494512 C T STRA6 Missense_Mutation p.E72K 0.40 tolerated(0.25) benign(0.234) TCGA-XF-A9T0-01 15 75941597 75941597 C T SNX33 Missense_Mutation p.P52S 0.48 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 15 76171500 76171500 G A UBE2Q2 Missense_Mutation p.E266K 0.49 deleterious(0) possibly_damaging(0.631) TCGA-XF-A9T0-01 15 76175762 76175762 G A UBE2Q2 Missense_Mutation p.G294E 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 15 78782993 78782993 A C IREB2 Missense_Mutation p.E738D 0.50 tolerated(0.2) benign(0.009) TCGA-XF-A9T0-01 15 79224765 79224765 A T CTSH Silent p.T147T 0.56 TCGA-XF-A9T0-01 15 79327530 79327530 G A RASGRF1 Nonsense_Mutation p.Q301* 0.59 TCGA-XF-A9T0-01 15 81199051 81199060 ATGCGGGCGG - KIAA1199 Frame_Shift_Del p.M487Rfs*5 0.51 TCGA-XF-A9T0-01 15 82337861 82337861 C T MEX3B Silent p.K62K 0.36 TCGA-XF-A9T0-01 15 85189045 85189045 C T WDR73 Silent p.L180L 0.36 TCGA-XF-A9T0-01 15 85191765 85191765 T A WDR73 Intron 0.25 TCGA-XF-A9T0-01 15 86123987 86123987 T C AKAP13 Silent p.S896S 0.49 TCGA-XF-A9T0-01 15 89414740 89414740 C T ACAN Silent p.I2358I 0.69 TCGA-XF-A9T0-01 15 90616390 90616390 G A ZNF710 Missense_Mutation p.V516I 0.44 tolerated(0.46) possibly_damaging(0.854) TCGA-XF-A9T0-01 15 99926306 99926306 G A LRRC28 Silent p.%3D 0.55 TCGA-XF-A9T0-01 16 11000396 11000396 T C CIITA Silent p.Y349Y 0.22 TCGA-XF-A9T0-01 16 11000801 11000801 C T CIITA Silent p.F484F 0.35 TCGA-XF-A9T0-01 16 14973934 14973934 G A NOMO1 Silent p.Q940Q 0.34 TCGA-XF-A9T0-01 16 19553220 19553247 GCAGGAGAAAATGTTAAAAGAGAAGAAG - CCP110 Frame_Shift_Del p.E689* 0.32 TCGA-XF-A9T0-01 16 23453822 23453822 C T COG7 Missense_Mutation p.A194T 0.45 tolerated(0.1) benign(0.012) TCGA-XF-A9T0-01 16 27512587 27512587 C T GTF3C1 Silent p.L662L 0.41 TCGA-XF-A9T0-01 16 28842045 28842045 C T ATXN2L Missense_Mutation p.R382C 0.45 deleterious(0.02) benign(0.007) TCGA-XF-A9T0-01 16 28986590 28986590 G A SPNS1 Missense_Mutation p.E40K 0.56 tolerated(0.88) benign(0.001) TCGA-XF-A9T0-01 16 30002585 30002585 C T TAOK2 3'Flank 0.40 TCGA-XF-A9T0-01 16 31895946 31895946 G A ZNF267 Splice_Site p.X44_splice 0.36 TCGA-XF-A9T0-01 16 4411172 4411172 C A CORO7 Missense_Mutation p.V589L 0.55 tolerated(0.13) benign(0.12) TCGA-XF-A9T0-01 16 46651614 46651614 C T SHCBP1 Missense_Mutation p.E107K 0.37 deleterious(0.03) probably_damaging(0.918) TCGA-XF-A9T0-01 16 46655281 46655281 C T SHCBP1 5'UTR 0.38 TCGA-XF-A9T0-01 16 50709818 50709818 G A SNX20 Silent p.L49L 0.42 TCGA-XF-A9T0-01 16 53913760 53913760 C G FTO Nonsense_Mutation p.S327* 0.12 TCGA-XF-A9T0-01 16 55690682 55690682 C T SLC6A2 Missense_Mutation p.R26W 0.32 deleterious(0.02) benign(0.339) TCGA-XF-A9T0-01 16 57473207 57473207 C A CIAPIN1 Missense_Mutation p.G66V 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-XF-A9T0-01 16 58010489 58010489 T G TEPP Nonsense_Mutation p.Y38* 0.41 TCGA-XF-A9T0-01 16 58035430 58035430 G A USB1 Missense_Mutation p.E15K 0.19 deleterious(0.01) possibly_damaging(0.642) TCGA-XF-A9T0-01 16 58077488 58077488 G A MMP15 Silent p.G509G 0.42 TCGA-XF-A9T0-01 16 66420902 66420902 C T CDH5 Missense_Mutation p.P134L 0.40 deleterious(0) possibly_damaging(0.624) TCGA-XF-A9T0-01 16 66603884 66603884 A T CMTM1 Missense_Mutation p.N160Y 0.39 tolerated(1) benign(0.054) TCGA-XF-A9T0-01 16 67208152 67208152 C T NOL3 Missense_Mutation p.S27L 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-XF-A9T0-01 16 67380303 67380303 G A LRRC36 Missense_Mutation p.D115N 0.49 tolerated(0.13) possibly_damaging(0.882) TCGA-XF-A9T0-01 16 67576462 67576462 C T FAM65A Silent p.I611I 0.41 TCGA-XF-A9T0-01 16 67645212 67645212 T C CTCF Silent p.P159P 0.15 TCGA-XF-A9T0-01 16 68026435 68026435 C T DPEP2 Missense_Mutation p.R123K 0.38 tolerated(0.38) benign(0.016) TCGA-XF-A9T0-01 16 68057079 68057079 G A DDX28 Silent p.L9L 0.27 TCGA-XF-A9T0-01 16 69154429 69154429 C T CHTF8 Missense_Mutation p.E89K 0.47 tolerated(0.5) benign(0.007) TCGA-XF-A9T0-01 16 72991332 72991332 C T ZFHX3 Missense_Mutation p.A905T 0.45 benign(0.031) TCGA-XF-A9T0-01 16 82068964 82068964 C T HSD17B2 5'UTR 0.39 TCGA-XF-A9T0-01 16 82104594 82104594 G A HSD17B2 Missense_Mutation p.D176N 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-XF-A9T0-01 16 825532 825532 C T MSLNL Missense_Mutation p.R410K 0.78 benign(0.316) TCGA-XF-A9T0-01 16 84212731 84212731 G A TAF1C Missense_Mutation p.S809L 0.52 tolerated(0.13) benign(0.22) TCGA-XF-A9T0-01 16 85691140 85691140 G C GSE1 Missense_Mutation p.E524Q 0.25 tolerated(0.11) possibly_damaging(0.562) TCGA-XF-A9T0-01 16 86544609 86544609 G A FOXF1 Missense_Mutation p.R145Q 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-XF-A9T0-01 16 90109781 90109781 A C GAS8 3'UTR 0.18 TCGA-XF-A9T0-01 17 11660903 11660913 CCAGTGAGCAG - DNAH9 Frame_Shift_Del p.P2297Lfs*3 0.27 TCGA-XF-A9T0-01 17 11806177 11806177 C T DNAH9 Missense_Mutation p.R3850C 0.18 probably_damaging(0.927) TCGA-XF-A9T0-01 17 11893792 11893792 G A ZNF18 Missense_Mutation p.P218L 0.23 tolerated(0.33) benign(0.003) TCGA-XF-A9T0-01 17 15496728 15496728 G A CDRT1 Silent p.F643F 0.35 TCGA-XF-A9T0-01 17 16285353 16285353 C T UBB Silent p.I44I 0.57 TCGA-XF-A9T0-01 17 16342882 16342882 T C TRPV2 3'Flank 0.49 TCGA-XF-A9T0-01 17 1636082 1636082 G A WDR81 Silent p.L1482L 0.92 TCGA-XF-A9T0-01 17 18057192 18057192 G A MYO15A Silent p.K2690K 0.49 TCGA-XF-A9T0-01 17 18070954 18070954 G A MYO15A Silent p.R3333R 0.50 TCGA-XF-A9T0-01 17 19091342 19091342 C T SNORD3A RNA 0.29 TCGA-XF-A9T0-01 17 19648393 19648393 G A ALDH3A1 Missense_Mutation p.S17L 0.50 deleterious(0.04) benign(0.005) TCGA-XF-A9T0-01 17 2310414 2310414 C T AC006435.1 Missense_Mutation p.D120N 0.20 unknown(0) TCGA-XF-A9T0-01 17 26684316 26684316 G A POLDIP2 Silent p.S52S 0.42 TCGA-XF-A9T0-01 17 26712215 26712215 C T SARM1 Silent p.R483R 0.63 TCGA-XF-A9T0-01 17 26925599 26925599 G A SPAG5 Missense_Mutation p.L36F 0.24 tolerated_low_confidence(0.15) benign(0.014) TCGA-XF-A9T0-01 17 27044312 27044312 G A RAB34 Intron 0.57 TCGA-XF-A9T0-01 17 27286445 27286445 G A SEZ6 Missense_Mutation p.S606F 0.48 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 17 27943797 27943797 G A CORO6 Silent p.F309F 0.47 TCGA-XF-A9T0-01 17 29167722 29167722 G A ATAD5 Missense_Mutation p.E722K 0.45 deleterious(0.03) benign(0.111) TCGA-XF-A9T0-01 17 29553672 29553672 T C NF1 Missense_Mutation p.F741L 0.31 tolerated(1) benign(0.001) TCGA-XF-A9T0-01 17 33318774 33318774 G C LIG3 Missense_Mutation p.E376Q 0.49 tolerated(0.15) benign(0.401) TCGA-XF-A9T0-01 17 34149669 34149669 G A TAF15 Missense_Mutation p.D106N 0.51 tolerated_low_confidence(0.11) benign(0.044) TCGA-XF-A9T0-01 17 3491562 3491562 G A SHPK Silent p.L382L 0.80 TCGA-XF-A9T0-01 17 34959015 34959015 C G MRM1 Missense_Mutation p.S192R 0.34 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 17 37619091 37619091 C A CDK12 Nonsense_Mutation p.S256* 0.37 TCGA-XF-A9T0-01 17 37865656 37865656 G A ERBB2 Silent p.K175K 0.32 TCGA-XF-A9T0-01 17 37948944 37948944 G A IKZF3 Missense_Mutation p.H136Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 17 38349980 38349980 C T RAPGEFL1 Silent p.V437V 0.33 TCGA-XF-A9T0-01 17 38420870 38420870 C T WIPF2 Silent p.L148L 0.11 TCGA-XF-A9T0-01 17 38857473 38857473 C G KRT24 Silent p.L258L 0.42 TCGA-XF-A9T0-01 17 39521218 39521218 C T KRT33B Missense_Mutation p.E304K 0.54 deleterious(0.04) possibly_damaging(0.858) TCGA-XF-A9T0-01 17 39658538 39658538 G A KRT13 Intron 0.52 TCGA-XF-A9T0-01 17 40010379 40010379 A T KLHL11 Silent p.I580I 0.43 TCGA-XF-A9T0-01 17 40021101 40021101 C T KLHL11 Missense_Mutation p.E175K 0.32 deleterious(0.03) benign(0.141) TCGA-XF-A9T0-01 17 40262802 40262802 G A DHX58 Missense_Mutation p.T167I 0.47 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 17 40267024 40267024 C A KAT2A Missense_Mutation p.K635N 0.12 deleterious(0.04) probably_damaging(0.929) TCGA-XF-A9T0-01 17 40693107 40693107 G C NAGLU Missense_Mutation p.E302Q 0.05 tolerated(0.08) possibly_damaging(0.612) TCGA-XF-A9T0-01 17 40715086 40715086 C T COASY Missense_Mutation p.S178L 0.42 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 17 40812300 40812300 G A TUBG2 Missense_Mutation p.G99E 0.47 deleterious(0.01) probably_damaging(0.981) TCGA-XF-A9T0-01 17 40826422 40826422 G A PLEKHH3 Silent p.P56P 0.30 TCGA-XF-A9T0-01 17 40831840 40831840 G A CCR10 Silent p.L274L 0.64 TCGA-XF-A9T0-01 17 41142373 41142373 G A RUNDC1 Missense_Mutation p.C299Y 0.46 deleterious(0) probably_damaging(0.921) TCGA-XF-A9T0-01 17 41622350 41622350 G A ETV4 Silent p.L65L 0.33 TCGA-XF-A9T0-01 17 42462407 42462407 C T ITGA2B Silent p.S236S 0.33 TCGA-XF-A9T0-01 17 44144948 44144948 C T KANSL1 Missense_Mutation p.G540E 0.53 deleterious(0.01) probably_damaging(0.933) TCGA-XF-A9T0-01 17 45886715 45886715 C T OSBPL7 Silent p.K670K 0.53 TCGA-XF-A9T0-01 17 46690596 46690596 C T HOXB8 Missense_Mutation p.E234K 0.29 tolerated(0.1) benign(0.012) TCGA-XF-A9T0-01 17 46805515 46805515 A G HOXB13 Silent p.S147S 0.50 TCGA-XF-A9T0-01 17 4692541 4692541 C G GLTPD2 Missense_Mutation p.P43A 0.41 tolerated(0.8) benign(0) TCGA-XF-A9T0-01 17 48278869 48278869 G A COL1A1 Silent p.F2F 0.21 TCGA-XF-A9T0-01 17 4860123 4860123 C T ENO3 Intron 0.89 TCGA-XF-A9T0-01 17 48776851 48776851 C T ANKRD40 Missense_Mutation p.M229I 0.46 tolerated(0.32) benign(0.001) TCGA-XF-A9T0-01 17 51901439 51901439 G C KIF2B Missense_Mutation p.D349H 0.52 deleterious(0.02) probably_damaging(0.909) TCGA-XF-A9T0-01 17 54912346 54912346 G A DGKE Missense_Mutation p.D64N 0.53 tolerated(0.3) possibly_damaging(0.762) TCGA-XF-A9T0-01 17 56598447 56598447 C T SEPT4 Missense_Mutation p.D412N 0.46 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T0-01 17 56620720 56620720 A C C17orf47 Silent p.S276S 0.13 TCGA-XF-A9T0-01 17 57157164 57157164 C G TRIM37 Missense_Mutation p.M189I 0.47 tolerated(0.14) benign(0.074) TCGA-XF-A9T0-01 17 57746245 57746245 A G CLTC Missense_Mutation p.R746G 0.37 deleterious(0.01) benign(0.053) TCGA-XF-A9T0-01 17 59534955 59534955 G C TBX4 Missense_Mutation p.E82Q 0.35 tolerated(0.17) probably_damaging(0.962) TCGA-XF-A9T0-01 17 60088059 60088059 C T MED13 Missense_Mutation p.E607K 0.28 tolerated(0.25) possibly_damaging(0.449) TCGA-XF-A9T0-01 17 60744209 60744209 C T MRC2 Silent p.L317L 0.54 TCGA-XF-A9T0-01 17 61907257 61907257 C T PSMC5 Missense_Mutation p.S71F 0.45 tolerated(0.09) probably_damaging(0.999) TCGA-XF-A9T0-01 17 67290819 67290819 C A ABCA5 Missense_Mutation p.G491V 0.25 deleterious(0.01) benign(0.183) TCGA-XF-A9T0-01 17 7127557 7127557 G A ACADVL Silent p.L532L 0.71 TCGA-XF-A9T0-01 17 72322384 72322384 G A KIF19 5'UTR 0.53 TCGA-XF-A9T0-01 17 72429833 72429833 C A GPRC5C Intron 0.37 TCGA-XF-A9T0-01 17 73230743 73230743 G A NUP85 Missense_Mutation p.E543K 0.46 deleterious(0) possibly_damaging(0.74) TCGA-XF-A9T0-01 17 73258495 73258506 TGGCAGTCATGC - MRPS7 Intron 0.51 TCGA-XF-A9T0-01 17 73871046 73871046 G C TRIM47 Missense_Mutation p.R479G 0.47 tolerated(0.37) probably_damaging(0.999) TCGA-XF-A9T0-01 17 74621989 74621989 G A ST6GALNAC1 Missense_Mutation p.S506F 0.29 possibly_damaging(0.904) TCGA-XF-A9T0-01 17 74729645 74729645 G A METTL23 Missense_Mutation p.M150I 0.49 deleterious(0) benign(0.065) TCGA-XF-A9T0-01 17 74734510 74734510 C T MFSD11 Nonsense_Mutation p.Q26* 0.26 TCGA-XF-A9T0-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.89 TCGA-XF-A9T0-01 17 7802344 7802344 G A CHD3 Missense_Mutation p.E782K 0.28 benign(0.292) TCGA-XF-A9T0-01 17 7836555 7836555 G A CNTROB Missense_Mutation p.R53Q 0.55 tolerated(0.13) benign(0.44) TCGA-XF-A9T0-01 17 78865558 78865558 T A RPTOR Nonsense_Mutation p.Y674* 0.44 TCGA-XF-A9T0-01 17 79166377 79166377 C T AZI1 Missense_Mutation p.E816K 0.47 deleterious(0.02) possibly_damaging(0.779) TCGA-XF-A9T0-01 17 79225389 79225389 C T SLC38A10 Missense_Mutation p.E657K 0.47 tolerated(0.1) benign(0.114) TCGA-XF-A9T0-01 17 79479350 79479350 C T ACTG1 Missense_Mutation p.D11N 0.47 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-XF-A9T0-01 17 80828222 80828222 C T TBCD Nonsense_Mutation p.Q481* 0.31 TCGA-XF-A9T0-01 17 8157555 8157555 G A PFAS Missense_Mutation p.D72N 0.35 tolerated(1) benign(0.001) TCGA-XF-A9T0-01 17 8448777 8448777 C G MYH10 Missense_Mutation p.E474Q 0.38 probably_damaging(0.997) TCGA-XF-A9T0-01 17 9541999 9541999 C T WDR16 Nonsense_Mutation p.Q516* 0.34 TCGA-XF-A9T0-01 18 14124349 14124349 C A ZNF519 Missense_Mutation p.A44S 0.38 tolerated(0.06) benign(0.048) TCGA-XF-A9T0-01 18 19321658 19321658 C G MIB1 Silent p.T38T 0.46 TCGA-XF-A9T0-01 18 20602093 20602093 A G RBBP8 Missense_Mutation p.Y819C 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-XF-A9T0-01 18 28723674 28723674 A C DSC1 Missense_Mutation p.I340M 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-XF-A9T0-01 18 2934416 2934416 C T LPIN2 Missense_Mutation p.D401N 0.41 deleterious(0.02) benign(0.027) TCGA-XF-A9T0-01 18 31322981 31322981 A T ASXL3 Missense_Mutation p.I1057F 0.30 possibly_damaging(0.878) TCGA-XF-A9T0-01 18 34833888 34833888 G A CELF4 Silent p.F449F 0.50 TCGA-XF-A9T0-01 18 40323517 40323517 C G RIT2 Missense_Mutation p.D199H 0.47 tolerated(0.38) possibly_damaging(0.861) TCGA-XF-A9T0-01 18 51820663 51820663 A C POLI Silent p.T683T 0.33 TCGA-XF-A9T0-01 18 56033282 56033282 G A NEDD4L Missense_Mutation p.E629K 0.37 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T0-01 18 5890387 5890387 C T TMEM200C Missense_Mutation p.R559Q 0.27 tolerated(1) benign(0) TCGA-XF-A9T0-01 18 72103899 72103899 G A FAM69C Missense_Mutation p.A366V 0.54 tolerated(0.1) benign(0.086) TCGA-XF-A9T0-01 18 77679372 77679372 C T PQLC1 Nonsense_Mutation p.W140* 0.52 TCGA-XF-A9T0-01 19 10668318 10668318 C T KRI1 Silent p.R515R 0.25 TCGA-XF-A9T0-01 19 1127600 1127600 G A SBNO2 Intron 0.32 TCGA-XF-A9T0-01 19 11942432 11942432 A G ZNF440 Silent p.Q147Q 0.29 TCGA-XF-A9T0-01 19 12154862 12154862 C T ZNF878 Missense_Mutation p.E452K 0.21 tolerated(0.18) benign(0.047) TCGA-XF-A9T0-01 19 12792636 12792636 C G DHPS 5'UTR 0.33 TCGA-XF-A9T0-01 19 12980032 12980032 A T MAST1 Nonsense_Mutation p.K976* 0.46 TCGA-XF-A9T0-01 19 14066749 14066749 A G DCAF15 Missense_Mutation p.D131G 0.38 tolerated(0.61) benign(0.027) TCGA-XF-A9T0-01 19 14139187 14139187 C G RLN3 Missense_Mutation p.I57M 0.31 tolerated(0.27) benign(0.049) TCGA-XF-A9T0-01 19 1455391 1455391 G A APC2 Silent p.S177S 0.50 TCGA-XF-A9T0-01 19 1506189 1506189 T C ADAMTSL5 Missense_Mutation p.H414R 0.31 tolerated(0.76) benign(0.001) TCGA-XF-A9T0-01 19 1605429 1605429 A T UQCR11 5'UTR 0.43 TCGA-XF-A9T0-01 19 16687442 16687442 C G MED26 Missense_Mutation p.R400P 0.29 deleterious(0) probably_damaging(0.931) TCGA-XF-A9T0-01 19 17327008 17327008 C T USE1 Nonsense_Mutation p.Q88* 0.33 TCGA-XF-A9T0-01 19 18084833 18084833 G T KCNN1 Missense_Mutation p.V46L 0.30 tolerated_low_confidence(0.07) benign(0.008) TCGA-XF-A9T0-01 19 18965818 18965818 C T UPF1 Nonsense_Mutation p.Q466* 0.17 TCGA-XF-A9T0-01 19 19413194 19413194 G A SUGP1 Missense_Mutation p.S256L 0.40 tolerated(0.09) benign(0.42) TCGA-XF-A9T0-01 19 1980006 1980006 G A CSNK1G2 Missense_Mutation p.D395N 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.595) TCGA-XF-A9T0-01 19 21300528 21300528 C T ZNF714 Missense_Mutation p.S353L 0.39 deleterious(0.03) probably_damaging(0.994) TCGA-XF-A9T0-01 19 21366286 21366286 C T ZNF431 Missense_Mutation p.H394Y 0.35 deleterious(0) possibly_damaging(0.823) TCGA-XF-A9T0-01 19 21950371 21950371 G A ZNF100 5'UTR 0.35 TCGA-XF-A9T0-01 19 23544133 23544133 C T ZNF91 Missense_Mutation p.E550K 0.33 tolerated(0.08) probably_damaging(0.985) TCGA-XF-A9T0-01 19 2807010 2807010 G A THOP1 Missense_Mutation p.M282I 0.52 tolerated(0.31) probably_damaging(0.994) TCGA-XF-A9T0-01 19 3110266 3110266 G A GNA11 Missense_Mutation p.A86T 0.61 deleterious(0) possibly_damaging(0.791) TCGA-XF-A9T0-01 19 3110298 3110298 G A GNA11 Silent p.T96T 0.44 TCGA-XF-A9T0-01 19 33089227 33089227 G A ANKRD27 Missense_Mutation p.H993Y 0.43 deleterious_low_confidence(0.05) benign(0.152) TCGA-XF-A9T0-01 19 33462792 33462792 G A CEP89 5'UTR 0.27 TCGA-XF-A9T0-01 19 35175339 35175339 A C ZNF302 Missense_Mutation p.T133P 0.42 tolerated(0.21) benign(0.354) TCGA-XF-A9T0-01 19 35758852 35758852 A C LSR 3'UTR 0.47 TCGA-XF-A9T0-01 19 35832702 35832713 CGTCTCCCACTA - CD22 In_Frame_Del p.V624_Y627del 0.29 TCGA-XF-A9T0-01 19 36940185 36940185 G T ZNF566 Silent p.G318G 0.36 TCGA-XF-A9T0-01 19 37210524 37210524 C T ZNF567 Nonsense_Mutation p.Q269* 0.40 TCGA-XF-A9T0-01 19 38899578 38899578 T C FAM98C 3'UTR 0.18 TCGA-XF-A9T0-01 19 38948880 38948880 G A RYR1 Silent p.G705G 0.39 TCGA-XF-A9T0-01 19 3984165 3984165 C T EEF2 Missense_Mutation p.E63K 0.32 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 19 40221903 40221903 G A CLC 3'UTR 0.38 TCGA-XF-A9T0-01 19 40419755 40419755 C T FCGBP Missense_Mutation p.S1080N 0.43 benign(0.055) TCGA-XF-A9T0-01 19 40580099 40580099 C T ZNF780A 3'UTR 0.46 TCGA-XF-A9T0-01 19 40723191 40723191 G A TTC9B Silent p.F171F 0.26 TCGA-XF-A9T0-01 19 41442074 41442074 G A CYP2B7P RNA 0.28 TCGA-XF-A9T0-01 19 41633826 41633826 G A CYP2F1 Missense_Mutation p.E439K 0.47 deleterious(0.01) benign(0.384) TCGA-XF-A9T0-01 19 41633921 41633921 G A CYP2F1 Silent p.L470L 0.61 TCGA-XF-A9T0-01 19 42392829 42392829 G A ARHGEF1 Missense_Mutation p.E55K 0.40 tolerated(0.11) probably_damaging(0.993) TCGA-XF-A9T0-01 19 44301742 44301742 T C LYPD5 3'UTR 0.20 TCGA-XF-A9T0-01 19 44661033 44661033 C G ZNF234 Missense_Mutation p.F288L 0.45 deleterious(0.01) probably_damaging(0.94) TCGA-XF-A9T0-01 19 44661583 44661583 C T ZNF234 Nonsense_Mutation p.Q472* 0.38 TCGA-XF-A9T0-01 19 45856356 45856356 C G ERCC2 Missense_Mutation p.E606Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 19 46094033 46094033 G T GPR4 3'UTR 0.46 TCGA-XF-A9T0-01 19 47960788 47960788 C T SLC8A2 Missense_Mutation p.D247N 0.43 deleterious(0) benign(0.43) TCGA-XF-A9T0-01 19 48908029 48908029 C T GRIN2D Silent p.T168T 0.39 TCGA-XF-A9T0-01 19 49004647 49004647 C T LMTK3 Silent p.L327L 0.34 TCGA-XF-A9T0-01 19 49118689 49118689 G C RPL18 Silent p.S169S 0.26 TCGA-XF-A9T0-01 19 49362156 49362156 G A PLEKHA4 Silent p.P311P 0.05 TCGA-XF-A9T0-01 19 49674971 49674971 G A TRPM4 Missense_Mutation p.R332Q 0.44 tolerated(0.54) benign(0.002) TCGA-XF-A9T0-01 19 49971741 49971741 T G ALDH16A1 Missense_Mutation p.L681R 0.36 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 19 50172152 50172152 G A BCL2L12 Missense_Mutation p.E183K 0.53 deleterious(0.01) possibly_damaging(0.904) TCGA-XF-A9T0-01 19 51217126 51217126 C T SHANK1 Missense_Mutation p.D241N 0.53 possibly_damaging(0.824) TCGA-XF-A9T0-01 19 52780706 52780706 C T ZNF766 Intron 0.80 TCGA-XF-A9T0-01 19 53432347 53432347 G A ZNF321P Nonsense_Mutation p.Q171* 0.27 TCGA-XF-A9T0-01 19 54561595 54561595 G C VSTM1 Nonsense_Mutation p.S107* 0.41 TCGA-XF-A9T0-01 19 54666777 54666777 T C TMC4 Missense_Mutation p.K471E 0.36 tolerated(0.38) benign(0.006) TCGA-XF-A9T0-01 19 56133985 56133985 G A ZNF784 Missense_Mutation p.P35L 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XF-A9T0-01 19 5687331 5687331 G A HSD11B1L Silent p.A149A 0.39 TCGA-XF-A9T0-01 19 58198069 58198069 C T ZNF551 Silent p.C142C 0.48 TCGA-XF-A9T0-01 19 58846168 58846168 G C ZSCAN22 5'UTR 0.23 TCGA-XF-A9T0-01 19 58928216 58928216 G A ZNF584 Missense_Mutation p.E111K 0.25 tolerated(0.45) benign(0) TCGA-XF-A9T0-01 19 6333548 6333548 G A ACER1 Silent p.F5F 0.40 TCGA-XF-A9T0-01 19 6333570 6333570 C T ACER1 5'UTR 0.33 TCGA-XF-A9T0-01 19 6531167 6531167 G A TNFSF9 Silent p.L40L 0.53 TCGA-XF-A9T0-01 19 7976326 7976326 G A MAP2K7 Silent p.E314E 0.26 TCGA-XF-A9T0-01 19 8618073 8618073 C T MYO1F Missense_Mutation p.E152K 0.26 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T0-01 19 877138 877138 C T MED16 Missense_Mutation p.E466K 0.21 tolerated(0.35) benign(0.286) TCGA-XF-A9T0-01 19 9057813 9057813 C A MUC16 Missense_Mutation p.G9878V 0.49 unknown(0) TCGA-XF-A9T0-01 19 9087168 9087168 T G MUC16 Missense_Mutation p.E1549D 0.16 unknown(0) TCGA-XF-A9T0-01 1 100381983 100381983 G T AGL Missense_Mutation p.G1426V 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 1 10511695 10511695 G C APITD1-CORT 3'UTR 0.30 TCGA-XF-A9T0-01 1 109608820 109608820 C T TAF13 Silent p.Q47Q 0.40 TCGA-XF-A9T0-01 1 109642826 109642826 G A TMEM167B 3'Flank 0.30 TCGA-XF-A9T0-01 1 109869774 109869774 C T SORT1 Missense_Mutation p.G495R 0.41 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 1 109870156 109870156 G C SORT1 Nonsense_Mutation p.S480* 0.42 TCGA-XF-A9T0-01 1 110037767 110037767 C T CYB561D1 Intron 0.39 TCGA-XF-A9T0-01 1 11194509 11194509 C T MTOR Silent p.Q1715Q 0.39 TCGA-XF-A9T0-01 1 114524083 114524083 A G OLFML3 Missense_Mutation p.T305A 0.40 deleterious(0.02) possibly_damaging(0.696) TCGA-XF-A9T0-01 1 114947963 114947963 G A TRIM33 Intron 0.48 TCGA-XF-A9T0-01 1 1158658 1158658 G A SDF4 Silent p.I181I 0.46 TCGA-XF-A9T0-01 1 116574152 116574152 C T SLC22A15 Silent p.L298L 0.35 TCGA-XF-A9T0-01 1 117603117 117603117 G A TTF2 Silent p.P23P 0.38 TCGA-XF-A9T0-01 1 117699343 117699343 G C VTCN1 Missense_Mutation p.R100G 0.14 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T0-01 1 119588231 119588231 G A WARS2 Nonsense_Mutation p.R135* 0.43 TCGA-XF-A9T0-01 1 120336695 120336695 G A REG4 3'UTR 0.54 TCGA-XF-A9T0-01 1 142803609 142803609 G T RP11-423O2.5 RNA 0.12 TCGA-XF-A9T0-01 1 144892446 144892446 C T PDE4DIP Intron 0.21 TCGA-XF-A9T0-01 1 144917597 144917597 C T PDE4DIP Missense_Mutation p.E503K 0.19 deleterious(0) possibly_damaging(0.836) TCGA-XF-A9T0-01 1 147092393 147092393 A G BCL9 Missense_Mutation p.N811S 0.53 tolerated(0.06) probably_damaging(0.952) TCGA-XF-A9T0-01 1 149871595 149871595 G A BOLA1 5'UTR 0.36 TCGA-XF-A9T0-01 1 150479498 150479498 G T TARS2 Missense_Mutation p.E705D 0.35 tolerated(0.06) probably_damaging(0.994) TCGA-XF-A9T0-01 1 150997118 150997118 G A PRUNE Missense_Mutation p.E123K 0.27 deleterious(0.04) probably_damaging(0.971) TCGA-XF-A9T0-01 1 151006326 151006326 G A PRUNE Silent p.L326L 0.38 TCGA-XF-A9T0-01 1 152085239 152085239 C T TCHH Missense_Mutation p.E152K 0.48 unknown(0) TCGA-XF-A9T0-01 1 152186682 152186682 G A HRNR Nonsense_Mutation p.Q2475* 0.20 TCGA-XF-A9T0-01 1 154171875 154171875 G A C1orf189 3'UTR 0.41 TCGA-XF-A9T0-01 1 155004162 155004162 A G DCST2 Silent p.C209C 0.33 TCGA-XF-A9T0-01 1 155112691 155112691 C T DPM3 Nonsense_Mutation p.W39* 0.44 TCGA-XF-A9T0-01 1 159019348 159019348 C T IFI16 Intron 0.34 TCGA-XF-A9T0-01 1 16202704 16202704 G A SPEN Missense_Mutation p.D138N 0.32 probably_damaging(0.995) TCGA-XF-A9T0-01 1 16266066 16266066 G A SPEN 3'UTR 0.40 TCGA-XF-A9T0-01 1 167038350 167038350 G A GPA33 Missense_Mutation p.S75L 0.26 tolerated(0.33) benign(0.012) TCGA-XF-A9T0-01 1 168044653 168044653 G A DCAF6 Missense_Mutation p.E946K 0.37 deleterious_low_confidence(0) benign(0.171) TCGA-XF-A9T0-01 1 16907324 16907324 C G NBPF1 Missense_Mutation p.E503Q 0.03 deleterious(0.02) probably_damaging(0.995) TCGA-XF-A9T0-01 1 169498883 169498883 G A F5 Silent p.L1794L 0.46 TCGA-XF-A9T0-01 1 16952883 16952883 G C CROCCP2 3'Flank 0.08 TCGA-XF-A9T0-01 1 171077281 171077281 C T FMO3 Silent p.F182F 0.37 TCGA-XF-A9T0-01 1 173921231 173921231 C T RC3H1 Missense_Mutation p.D806N 0.34 tolerated(0.15) benign(0.009) TCGA-XF-A9T0-01 1 178866853 178866853 T C RALGPS2 Missense_Mutation p.Y496H 0.34 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T0-01 1 179494485 179494485 T G AXDND1 Missense_Mutation p.F838C 0.18 tolerated(0.17) benign(0.425) TCGA-XF-A9T0-01 1 179782953 179782953 G A FAM163A Missense_Mutation p.E45K 0.44 tolerated(0.4) benign(0.231) TCGA-XF-A9T0-01 1 180034342 180034342 C T CEP350 Silent p.I1834I 0.54 TCGA-XF-A9T0-01 1 185067233 185067233 A G RNF2 Missense_Mutation p.E165G 0.11 tolerated(0.06) benign(0.309) TCGA-XF-A9T0-01 1 185125739 185125739 C T TRMT1L Missense_Mutation p.A36T 0.71 tolerated_low_confidence(0.1) possibly_damaging(0.483) TCGA-XF-A9T0-01 1 19018372 19018372 G A PAX7 Silent p.E237E 0.39 TCGA-XF-A9T0-01 1 19166504 19166504 A G TAS1R2 Silent p.S703S 0.45 TCGA-XF-A9T0-01 1 193172949 193172949 C G CDC73 Missense_Mutation p.Q333E 0.61 tolerated(0.85) benign(0.268) TCGA-XF-A9T0-01 1 196799722 196799722 G A CFHR1 Missense_Mutation p.E234K 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-XF-A9T0-01 1 200619716 200619716 G A DDX59 Missense_Mutation p.S384L 0.53 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 1 201380552 201380552 G A TNNI1 Missense_Mutation p.S130F 0.29 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T0-01 1 201459425 201459425 C T CSRP1 Missense_Mutation p.E54K 0.24 tolerated(0.66) benign(0.016) TCGA-XF-A9T0-01 1 201843449 201843449 G A IPO9 Missense_Mutation p.V928I 0.26 tolerated(0.5) benign(0.023) TCGA-XF-A9T0-01 1 203834186 203834186 G A SNRPE Missense_Mutation p.M54I 0.49 deleterious(0.02) benign(0.064) TCGA-XF-A9T0-01 1 204124093 204124093 C T REN 3'UTR 0.18 TCGA-XF-A9T0-01 1 204412719 204412719 C T PIK3C2B Silent p.L958L 0.67 TCGA-XF-A9T0-01 1 205273340 205273340 C T NUAK2 Silent p.K375K 0.57 TCGA-XF-A9T0-01 1 205767886 205767886 T G SLC41A1 Missense_Mutation p.N252T 0.61 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T0-01 1 206760323 206760323 C T RASSF5 3'UTR 0.34 TCGA-XF-A9T0-01 1 20879526 20879526 G A FAM43B Silent p.A20A 0.36 TCGA-XF-A9T0-01 1 209961912 209961912 G A IRF6 Silent p.V419V 0.26 TCGA-XF-A9T0-01 1 209964078 209964078 G A IRF6 Silent p.V274V 0.38 TCGA-XF-A9T0-01 1 21044155 21044155 C T KIF17 Missense_Mutation p.M15I 0.44 deleterious(0.04) benign(0.383) TCGA-XF-A9T0-01 1 211449675 211449675 C T RCOR3 Missense_Mutation p.P144L 0.52 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 1 21938310 21938310 C T RAP1GAP Splice_Site p.X269_splice 0.38 TCGA-XF-A9T0-01 1 220825334 220825334 G A MARK1 Silent p.T526T 0.55 TCGA-XF-A9T0-01 1 221057812 221057812 C T HLX Silent p.V411V 0.55 TCGA-XF-A9T0-01 1 22204681 22204681 T C HSPG2 Missense_Mutation p.K895E 0.47 probably_damaging(0.991) TCGA-XF-A9T0-01 1 223284213 223284213 C A TLR5 Missense_Mutation p.D721Y 0.08 deleterious(0) possibly_damaging(0.88) TCGA-XF-A9T0-01 1 223284215 223284215 C G TLR5 Missense_Mutation p.S720T 0.09 tolerated(0.12) possibly_damaging(0.833) TCGA-XF-A9T0-01 1 225965633 225965633 C G SRP9 5'UTR 0.19 TCGA-XF-A9T0-01 1 226109033 226109033 T A RP4-559A3.7 Silent p.P150P 0.14 TCGA-XF-A9T0-01 1 226564895 226564895 C T PARP1 Missense_Mutation p.E619K 0.61 tolerated(0.51) benign(0.034) TCGA-XF-A9T0-01 1 230398368 230398368 T G GALNT2 Missense_Mutation p.Y396D 0.31 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 1 233511790 233511790 G A MLK4 Missense_Mutation p.D602N 0.38 deleterious(0) benign(0.038) TCGA-XF-A9T0-01 1 234613945 234613945 C T TARBP1 Missense_Mutation p.C302Y 0.27 tolerated(0.06) benign(0.007) TCGA-XF-A9T0-01 1 236341899 236341899 C T GPR137B Missense_Mutation p.S217F 0.30 deleterious(0.02) possibly_damaging(0.786) TCGA-XF-A9T0-01 1 23667441 23667441 T C HNRNPR Missense_Mutation p.T21A 0.44 tolerated(0.06) benign(0.051) TCGA-XF-A9T0-01 1 240370473 240370473 G A FMN2 Silent p.L787L 0.34 TCGA-XF-A9T0-01 1 24121123 24121123 C T LYPLA2 Intron 0.44 TCGA-XF-A9T0-01 1 243419530 243419530 C T SDCCAG8 Missense_Mutation p.R19W 0.51 deleterious(0) probably_damaging(0.951) TCGA-XF-A9T0-01 1 25773322 25773322 C T TMEM57 Silent p.F50F 0.49 TCGA-XF-A9T0-01 1 25810720 25810720 C T TMEM57 Missense_Mutation p.S423L 0.41 deleterious(0.04) benign(0.065) TCGA-XF-A9T0-01 1 26153136 26153136 G A MTFR1L Nonsense_Mutation p.W90* 0.39 TCGA-XF-A9T0-01 1 26189570 26189570 A G PAQR7 Missense_Mutation p.F254S 0.36 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 1 26189571 26189571 A C PAQR7 Missense_Mutation p.F254V 0.33 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 1 26800526 26800526 C T HMGN2 Intron 0.31 TCGA-XF-A9T0-01 1 27097745 27097745 G A ARID1A Missense_Mutation p.D1112N 0.28 unknown(0) TCGA-XF-A9T0-01 1 27216180 27216180 G A GPN2 Silent p.L136L 0.36 TCGA-XF-A9T0-01 1 27681740 27681740 C T MAP3K6 3'UTR 0.33 TCGA-XF-A9T0-01 1 27683200 27683200 C T MAP3K6 Silent p.L1135L 0.29 TCGA-XF-A9T0-01 1 31811809 31811809 A G ZCCHC17 Silent p.K77K 0.09 TCGA-XF-A9T0-01 1 32149591 32149591 A G COL16A1 Missense_Mutation p.L766P 0.36 unknown(0) TCGA-XF-A9T0-01 1 32647030 32647030 G A TXLNA Silent p.R119R 0.32 TCGA-XF-A9T0-01 1 35223725 35223725 G C GJB5 Missense_Mutation p.R265P 0.47 tolerated_low_confidence(0.06) benign(0.005) TCGA-XF-A9T0-01 1 3542277 3542277 G A TPRG1L Silent p.E98E 0.16 TCGA-XF-A9T0-01 1 36299683 36299683 A G AGO4 Missense_Mutation p.D491G 0.52 deleterious(0) possibly_damaging(0.597) TCGA-XF-A9T0-01 1 36636778 36636778 G C MAP7D1 Missense_Mutation p.E85Q 0.24 possibly_damaging(0.782) TCGA-XF-A9T0-01 1 3731998 3731998 T A CEP104 Nonsense_Mutation p.K916* 0.17 TCGA-XF-A9T0-01 1 38039946 38039946 G C GNL2 Missense_Mutation p.Q472E 0.56 tolerated(0.54) benign(0.001) TCGA-XF-A9T0-01 1 38095376 38095376 C G RSPO1 5'UTR 0.67 TCGA-XF-A9T0-01 1 39799986 39799986 G C MACF1 Intron 0.18 TCGA-XF-A9T0-01 1 40309840 40309840 C T TRIT1 Silent p.E389E 0.46 TCGA-XF-A9T0-01 1 40627174 40627174 C T RLF Missense_Mutation p.R35W 0.24 deleterious_low_confidence(0.02) probably_damaging(0.963) TCGA-XF-A9T0-01 1 43396854 43396854 C T SLC2A1 Silent p.Q46Q 0.33 TCGA-XF-A9T0-01 1 43638511 43638511 C T WDR65 Silent p.I29I 0.29 TCGA-XF-A9T0-01 1 43829789 43829789 G A ELOVL1 Missense_Mutation p.S213L 0.50 tolerated(0.71) probably_damaging(0.964) TCGA-XF-A9T0-01 1 44170112 44170112 A G KDM4A 3'UTR 0.52 TCGA-XF-A9T0-01 1 45484277 45484277 C T ZSWIM5 Missense_Mutation p.G1136E 0.45 deleterious(0) unknown(0) TCGA-XF-A9T0-01 1 46099287 46099287 G A GPBP1L1 Silent p.I306I 0.25 TCGA-XF-A9T0-01 1 46724383 46724383 C T RAD54L Missense_Mutation p.S79L 0.24 deleterious(0.01) possibly_damaging(0.862) TCGA-XF-A9T0-01 1 5940235 5940235 G A NPHP4 Silent p.I850I 0.52 TCGA-XF-A9T0-01 1 67337122 67337122 T A WDR78 Missense_Mutation p.M291L 0.43 deleterious(0.01) benign(0.285) TCGA-XF-A9T0-01 1 67450396 67450396 T G MIER1 Missense_Mutation p.L504R 0.52 tolerated(0.11) benign(0.003) TCGA-XF-A9T0-01 1 67895860 67895860 C T SERBP1 Missense_Mutation p.G42S 0.44 tolerated(0.54) benign(0.206) TCGA-XF-A9T0-01 1 70819990 70819990 G A ANKRD13C Silent p.L34L 0.33 TCGA-XF-A9T0-01 1 76257181 76257181 C T RABGGTB Silent p.I168I 0.33 TCGA-XF-A9T0-01 1 85279607 85279607 G A LPAR3 Silent p.L328L 0.67 TCGA-XF-A9T0-01 1 86048116 86048116 C T CYR61 Missense_Mutation p.R218C 0.53 deleterious(0.05) benign(0.28) TCGA-XF-A9T0-01 1 89520826 89520826 T C GBP1 Missense_Mutation p.T481A 0.55 tolerated(1) benign(0.002) TCGA-XF-A9T0-01 1 89579942 89579942 G A GBP2 Silent p.I302I 0.81 TCGA-XF-A9T0-01 1 94033346 94033346 G A BCAR3 Silent p.L679L 0.58 TCGA-XF-A9T0-01 1 9786989 9786989 C T PIK3CD Missense_Mutation p.T1007I 0.32 deleterious(0) possibly_damaging(0.762) TCGA-XF-A9T0-01 20 1293283 1293283 G A SDCBP2 Nonsense_Mutation p.Q170* 0.47 TCGA-XF-A9T0-01 20 1352810 1352810 G A FKBP1A Silent p.I91I 0.56 TCGA-XF-A9T0-01 20 18461116 18461116 A C POLR3F Missense_Mutation p.E215A 0.53 tolerated(0.08) benign(0.169) TCGA-XF-A9T0-01 20 23731323 23731323 C A CST1 Missense_Mutation p.D61Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 20 279428 279428 G A ZCCHC3 Missense_Mutation p.V401M 0.29 tolerated_low_confidence(0.18) benign(0.001) TCGA-XF-A9T0-01 20 30193213 30193213 C T ID1 Missense_Mutation p.T8I 0.83 tolerated(0.08) unknown(0) TCGA-XF-A9T0-01 20 31292698 31292698 C T COMMD7 Silent p.Q115Q 0.81 TCGA-XF-A9T0-01 20 33000425 33000425 T G ITCH Nonsense_Mutation p.L106* 0.78 TCGA-XF-A9T0-01 20 43922565 43922565 T C MATN4 Missense_Mutation p.E557G 0.85 benign(0.025) TCGA-XF-A9T0-01 20 44330735 44330735 G A WFDC13 5'UTR 0.65 TCGA-XF-A9T0-01 20 44691308 44691308 G A NCOA5 Silent p.A457A 0.79 TCGA-XF-A9T0-01 20 47567865 47567865 C T ARFGEF2 Silent p.L94L 0.84 TCGA-XF-A9T0-01 20 48494562 48494563 CC - SLC9A8 Frame_Shift_Del p.P390Sfs*4 0.15 TCGA-XF-A9T0-01 20 5539379 5539379 G T GPCPD1 Missense_Mutation p.S540Y 0.28 deleterious(0) possibly_damaging(0.841) TCGA-XF-A9T0-01 20 58348465 58348465 G A PHACTR3 Missense_Mutation p.E295K 0.81 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T0-01 20 60963436 60963436 C T RPS21 Intron 0.93 TCGA-XF-A9T0-01 20 61167812 61167812 G C C20orf166 Silent p.L94L 0.14 TCGA-XF-A9T0-01 20 62624779 62624779 G A PRPF6 Missense_Mutation p.E127K 0.94 tolerated(0.05) possibly_damaging(0.756) TCGA-XF-A9T0-01 20 865893 865893 C T ANGPT4 Silent p.A221A 0.60 TCGA-XF-A9T0-01 21 28214921 28214921 C T ADAMTS1 Missense_Mutation p.E272K 0.39 tolerated(0.98) possibly_damaging(0.711) TCGA-XF-A9T0-01 21 31874293 31874293 C A KRTAP19-5 Missense_Mutation p.G39V 0.72 tolerated_low_confidence(0.16) unknown(0) TCGA-XF-A9T0-01 21 39672168 39672169 - AGTTTG KCNJ15 In_Frame_Ins p.F330_E331dup 0.18 TCGA-XF-A9T0-01 21 40622758 40622758 T C BRWD1 Missense_Mutation p.I771M 0.37 tolerated(0.25) benign(0.005) TCGA-XF-A9T0-01 21 44270135 44270135 G A WDR4 3'UTR 0.37 TCGA-XF-A9T0-01 21 47856012 47856012 C T PCNT Missense_Mutation p.L2983F 0.45 possibly_damaging(0.86) TCGA-XF-A9T0-01 22 18218289 18218289 G A BID 3'UTR 0.11 TCGA-XF-A9T0-01 22 18562692 18562692 G A PEX26 Missense_Mutation p.E95K 0.06 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 22 18979511 18979511 C T DGCR5 RNA 0.15 TCGA-XF-A9T0-01 22 19048469 19048469 C T DGCR2 Intron 0.12 TCGA-XF-A9T0-01 22 19751747 19751747 C G TBX1 Missense_Mutation p.H194Q 0.15 deleterious(0) probably_damaging(0.976) TCGA-XF-A9T0-01 22 19965022 19965022 C T ARVCF Missense_Mutation p.E596K 0.81 tolerated(0.69) benign(0.169) TCGA-XF-A9T0-01 22 20132897 20132902 GGGACC - ZDHHC8 Intron 0.09 TCGA-XF-A9T0-01 22 21134137 21134137 G A SERPIND1 Silent p.S179S 0.82 TCGA-XF-A9T0-01 22 22040818 22040818 C T PPIL2 Missense_Mutation p.A254V 0.81 tolerated(0.32) benign(0.126) TCGA-XF-A9T0-01 22 22712478 22712478 G A IGLV1-47 Missense_Mutation p.R74Q 0.78 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-XF-A9T0-01 22 26688956 26688956 G A SEZ6L Missense_Mutation p.D227N 0.88 tolerated(0.43) benign(0.03) TCGA-XF-A9T0-01 22 26890260 26890260 G C TFIP11 Missense_Mutation p.S668C 0.07 tolerated(0.17) probably_damaging(0.931) TCGA-XF-A9T0-01 22 26951231 26951231 G A TPST2 Intron 0.13 TCGA-XF-A9T0-01 22 31663807 31663807 A T LIMK2 Missense_Mutation p.I371F 0.25 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T0-01 22 40661968 40661968 C T TNRC6B Silent p.H578H 0.53 TCGA-XF-A9T0-01 22 43525274 43525274 C G BIK Missense_Mutation p.P149R 0.15 deleterious_low_confidence(0.02) benign(0.211) TCGA-XF-A9T0-01 22 45927174 45927174 G A FBLN1 Missense_Mutation p.E172K 0.18 tolerated(0.05) possibly_damaging(0.636) TCGA-XF-A9T0-01 22 50719851 50719851 G A PLXNB2 Silent p.L1200L 0.30 TCGA-XF-A9T0-01 22 50987613 50987613 G A KLHDC7B Missense_Mutation p.E340K 0.81 tolerated(0.11) benign(0.418) TCGA-XF-A9T0-01 2 100079005 100079005 G A REV1 Missense_Mutation p.S45L 0.32 deleterious(0.04) possibly_damaging(0.555) TCGA-XF-A9T0-01 2 100915402 100915402 C T LONRF2 Missense_Mutation p.E458K 0.41 deleterious(0.03) possibly_damaging(0.468) TCGA-XF-A9T0-01 2 102855719 102855719 C A IL1RL2 3'UTR 0.10 TCGA-XF-A9T0-01 2 109392268 109392268 T C RANBP2 Silent p.C2791C 0.33 TCGA-XF-A9T0-01 2 112608424 112608424 G A ANAPC1 Missense_Mutation p.R527W 0.32 deleterious(0.02) possibly_damaging(0.855) TCGA-XF-A9T0-01 2 120124718 120124718 C T DBI 5'Flank 0.40 TCGA-XF-A9T0-01 2 130951527 130951527 G A TUBA3E Silent p.F296F 0.41 TCGA-XF-A9T0-01 2 133402611 133402611 T A LYPD1 3'UTR 0.57 TCGA-XF-A9T0-01 2 145157118 145157118 C G ZEB2 Missense_Mutation p.D546H 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 2 145157758 145157758 C T ZEB2 Silent p.K332K 0.41 TCGA-XF-A9T0-01 2 145274903 145274903 G A ZEB2 Silent p.I5I 0.43 TCGA-XF-A9T0-01 2 152529144 152529144 G A NEB Silent p.F1346F 0.38 TCGA-XF-A9T0-01 2 157184481 157184481 G A NR4A2 Missense_Mutation p.S347L 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 2 164466016 164466016 G C FIGN 3'UTR 0.43 TCGA-XF-A9T0-01 2 164468161 164468161 C T FIGN Missense_Mutation p.A61T 0.36 deleterious(0) probably_damaging(0.977) TCGA-XF-A9T0-01 2 166805937 166805937 G A TTC21B Silent p.L77L 0.43 TCGA-XF-A9T0-01 2 170113633 170113633 C T LRP2 Splice_Site p.X880_splice 0.33 TCGA-XF-A9T0-01 2 170131578 170131598 ACTCCATAGGGCCTCAGGGAA - LRP2 In_Frame_Del p.S642_V648del 0.36 TCGA-XF-A9T0-01 2 170492614 170492614 C G PPIG Missense_Mutation p.P344A 0.34 deleterious(0.01) unknown(0) TCGA-XF-A9T0-01 2 172725288 172725288 C G SLC25A12 Missense_Mutation p.D38H 0.35 deleterious(0) probably_damaging(0.935) TCGA-XF-A9T0-01 2 172966987 172966987 C T DLX2 Missense_Mutation p.A94T 0.40 tolerated(0.39) benign(0.013) TCGA-XF-A9T0-01 2 173916587 173916587 G A RAPGEF4 3'UTR 0.35 TCGA-XF-A9T0-01 2 175289227 175289227 T G SCRN3 Missense_Mutation p.F314L 0.45 deleterious(0) probably_damaging(0.983) TCGA-XF-A9T0-01 2 17846803 17846803 C T SMC6 Missense_Mutation p.R1080K 0.31 tolerated(0.38) benign(0.005) TCGA-XF-A9T0-01 2 179391763 179391763 C T TTN Silent p.V35984V 0.45 TCGA-XF-A9T0-01 2 179411916 179411916 C T TTN Missense_Mutation p.E31446K 0.35 TCGA-XF-A9T0-01 2 179477943 179477943 A G TTN Silent p.A16531A 0.31 TCGA-XF-A9T0-01 2 182413485 182413485 G A CERKL Missense_Mutation p.A358V 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T0-01 2 183730974 183730974 C T FRZB Missense_Mutation p.E103K 0.32 deleterious(0.01) possibly_damaging(0.676) TCGA-XF-A9T0-01 2 183866887 183866887 G A NCKAP1 Silent p.Y166Y 0.32 TCGA-XF-A9T0-01 2 187713777 187713777 C T ZSWIM2 Silent p.L27L 0.47 TCGA-XF-A9T0-01 2 190603379 190603379 C T ANKAR Missense_Mutation p.S1224L 0.44 deleterious(0) possibly_damaging(0.674) TCGA-XF-A9T0-01 2 192288563 192288563 G A MYO1B Silent p.E1096E 0.42 TCGA-XF-A9T0-01 2 192543425 192543425 G A NABP1 Missense_Mutation p.E29K 0.37 deleterious(0) possibly_damaging(0.864) TCGA-XF-A9T0-01 2 196599625 196599625 G A SLC39A10 Missense_Mutation p.G786S 0.37 tolerated(0.16) probably_damaging(0.937) TCGA-XF-A9T0-01 2 200820839 200820839 G A C2orf47 Silent p.Q106Q 0.54 TCGA-XF-A9T0-01 2 202013884 202013884 G A CFLAR Intron 0.44 TCGA-XF-A9T0-01 2 203383738 203383738 G T BMPR2 Missense_Mutation p.R272L 0.40 tolerated(0.08) possibly_damaging(0.772) TCGA-XF-A9T0-01 2 203748982 203748982 A G WDR12 Silent p.C309C 0.35 TCGA-XF-A9T0-01 2 20403795 20403795 G A SDC1 Silent p.L136L 0.42 TCGA-XF-A9T0-01 2 204360077 204360077 C T RAPH1 Splice_Site p.X1_splice 0.27 TCGA-XF-A9T0-01 2 209192962 209192962 C T PIKFYVE Missense_Mutation p.S1226F 0.59 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 2 215852369 215852369 A C ABCA12 Splice_Site p.X1326_splice 0.57 TCGA-XF-A9T0-01 2 216811815 216811815 C T MREG Missense_Mutation p.D93N 0.71 deleterious(0) probably_damaging(0.983) TCGA-XF-A9T0-01 2 216960901 216960901 G A TMEM169 Missense_Mutation p.G72E 0.72 tolerated(0.2) possibly_damaging(0.732) TCGA-XF-A9T0-01 2 219137559 219137559 G A PNKD Intron 0.89 TCGA-XF-A9T0-01 2 220161827 220161827 G A PTPRN Missense_Mutation p.R706W 0.62 deleterious(0) probably_damaging(0.928) TCGA-XF-A9T0-01 2 231947677 231947677 A T PSMD1 Missense_Mutation p.K498N 0.80 deleterious(0.02) benign(0.321) TCGA-XF-A9T0-01 2 232653303 232653303 C T COPS7B Missense_Mutation p.S8L 0.70 deleterious(0.02) benign(0.193) TCGA-XF-A9T0-01 2 237029082 237029082 C T AGAP1 Silent p.L787L 0.62 TCGA-XF-A9T0-01 2 26539864 26539864 C T GPR113 Missense_Mutation p.E140K 0.62 tolerated_low_confidence(0.36) benign(0.005) TCGA-XF-A9T0-01 2 27456908 27456908 T G CAD Silent p.G1144G 0.48 TCGA-XF-A9T0-01 2 27851919 27851919 G A GPN1 Silent p.R12R 0.30 TCGA-XF-A9T0-01 2 27886513 27886513 G A SLC4A1AP 5'UTR 0.46 TCGA-XF-A9T0-01 2 37235794 37235794 C G HEATR5B Missense_Mutation p.L1494F 0.19 deleterious(0.01) possibly_damaging(0.801) TCGA-XF-A9T0-01 2 37402291 37402291 T A SULT6B1 Missense_Mutation p.Y165F 0.29 tolerated(0.22) possibly_damaging(0.464) TCGA-XF-A9T0-01 2 37480285 37480285 A G PRKD3 3'UTR 0.48 TCGA-XF-A9T0-01 2 47301052 47301052 G A TTC7A Missense_Mutation p.R856K 0.38 tolerated(0.06) probably_damaging(0.979) TCGA-XF-A9T0-01 2 47382381 47382381 G T C2orf61 Missense_Mutation p.P4T 0.06 tolerated_low_confidence(0.1) benign(0.001) TCGA-XF-A9T0-01 2 55252419 55252419 G A RTN4 Missense_Mutation p.S939F 0.47 deleterious(0.03) benign(0.005) TCGA-XF-A9T0-01 2 55470564 55470564 C A MTIF2 Missense_Mutation p.V518L 0.35 tolerated(0.39) benign(0.003) TCGA-XF-A9T0-01 2 61439008 61439008 C T USP34 Missense_Mutation p.M2913I 0.49 tolerated(0.26) benign(0.04) TCGA-XF-A9T0-01 2 61462992 61462992 C G USP34 Missense_Mutation p.Q2340H 0.33 deleterious(0.05) benign(0.101) TCGA-XF-A9T0-01 2 63282982 63282982 C T OTX1 Missense_Mutation p.A199V 0.41 tolerated(0.25) unknown(0) TCGA-XF-A9T0-01 2 64779143 64779143 C T AFTPH Silent p.L179L 0.39 TCGA-XF-A9T0-01 2 65216770 65216770 G A SLC1A4 5'UTR 0.60 TCGA-XF-A9T0-01 2 65492442 65492442 G A ACTR2 Intron 0.27 TCGA-XF-A9T0-01 2 66665001 66665001 C T MEIS1 Nonsense_Mutation p.Q49* 0.36 TCGA-XF-A9T0-01 2 70071297 70071297 C T GMCL1 Missense_Mutation p.H243Y 0.42 deleterious(0.04) benign(0.173) TCGA-XF-A9T0-01 2 71159956 71159957 GG C VAX2 Frame_Shift_Del p.E166Rfs*38 0.24 TCGA-XF-A9T0-01 2 71417133 71417133 C T PAIP2B Missense_Mutation p.E53K 0.33 deleterious(0.02) possibly_damaging(0.804) TCGA-XF-A9T0-01 2 73519118 73519118 G A EGR4 Nonsense_Mutation p.Q413* 0.36 TCGA-XF-A9T0-01 2 73784433 73784433 G A ALMS1 Missense_Mutation p.E3388K 0.32 benign(0.291) TCGA-XF-A9T0-01 2 74682275 74682275 C T INO80B Missense_Mutation p.S11F 0.35 deleterious_low_confidence(0.01) benign(0.347) TCGA-XF-A9T0-01 2 85108094 85108094 C T TRABD2A Missense_Mutation p.G24R 0.31 tolerated(0.36) benign(0.004) TCGA-XF-A9T0-01 2 85788054 85788054 C T GGCX Missense_Mutation p.R33Q 0.54 tolerated_low_confidence(0.27) benign(0.002) TCGA-XF-A9T0-01 2 86669240 86669240 G A KDM3A Missense_Mutation p.D24N 0.42 tolerated(0.26) benign(0.177) TCGA-XF-A9T0-01 2 86682259 86682259 G A KDM3A Missense_Mutation p.E169K 0.33 deleterious(0.05) benign(0.37) TCGA-XF-A9T0-01 2 88402622 88402622 A G SMYD1 Missense_Mutation p.T312A 0.32 tolerated(0.79) benign(0.001) TCGA-XF-A9T0-01 2 95940233 95940233 G A PROM2 5'UTR 0.16 TCGA-XF-A9T0-01 2 96799787 96799787 C T ASTL Missense_Mutation p.R85Q 0.57 tolerated(0.3) benign(0.011) TCGA-XF-A9T0-01 2 99342779 99342779 C T MGAT4A Missense_Mutation p.G6E 0.26 deleterious(0.04) benign(0.273) TCGA-XF-A9T0-01 3 110837615 110837615 C T PVRL3 Silent p.D205D 0.42 TCGA-XF-A9T0-01 3 111769517 111769517 G A TMPRSS7 Splice_Site p.X238_splice 0.24 TCGA-XF-A9T0-01 3 112282361 112282361 G A SLC35A5 Silent p.V37V 0.27 TCGA-XF-A9T0-01 3 113804558 113804558 C A QTRTD1 Missense_Mutation p.S364Y 0.42 deleterious(0.01) possibly_damaging(0.459) TCGA-XF-A9T0-01 3 119102031 119102031 C T ARHGAP31 Nonsense_Mutation p.Q214* 0.53 TCGA-XF-A9T0-01 3 119217596 119217596 C T TIMMDC1 Missense_Mutation p.P6S 0.23 tolerated_low_confidence(0.1) benign(0.008) TCGA-XF-A9T0-01 3 122667356 122667356 C G SEMA5B Missense_Mutation p.E163Q 0.25 tolerated(0.61) benign(0.019) TCGA-XF-A9T0-01 3 122679998 122679998 G A SEMA5B Missense_Mutation p.S92L 0.48 deleterious_low_confidence(0) benign(0.001) TCGA-XF-A9T0-01 3 12650384 12650384 G A RAF1 Silent p.I154I 0.21 TCGA-XF-A9T0-01 3 127294072 127294072 G A TPRA1 Silent p.F270F 0.19 TCGA-XF-A9T0-01 3 132172941 132172941 C T DNAJC13 Missense_Mutation p.P291L 0.29 tolerated(0.15) benign(0.025) TCGA-XF-A9T0-01 3 132257097 132257097 G A DNAJC13 Missense_Mutation p.E2235K 0.47 deleterious(0.04) benign(0.424) TCGA-XF-A9T0-01 3 133473511 133473511 G A TF Silent p.E166E 0.46 TCGA-XF-A9T0-01 3 13522798 13522798 G A HDAC11 Missense_Mutation p.V19M 0.40 deleterious(0) probably_damaging(0.941) TCGA-XF-A9T0-01 3 136062721 136062721 A T STAG1 Silent p.I1133I 0.49 TCGA-XF-A9T0-01 3 141163632 141163632 C T ZBTB38 Missense_Mutation p.S801L 0.66 deleterious(0) benign(0.166) TCGA-XF-A9T0-01 3 141622523 141622523 G A ATP1B3 Silent p.T57T 0.57 TCGA-XF-A9T0-01 3 146234843 146234843 C T PLSCR1 Missense_Mutation p.D284N 0.38 deleterious(0.02) benign(0.38) TCGA-XF-A9T0-01 3 148925255 148925255 T C CP Missense_Mutation p.I311V 0.48 tolerated(0.45) benign(0) TCGA-XF-A9T0-01 3 151155014 151155014 G A IGSF10 Silent p.I2445I 0.48 TCGA-XF-A9T0-01 3 160395611 160395611 C T ARL14 Silent p.L159L 0.17 TCGA-XF-A9T0-01 3 169487235 169487235 C T ACTRT3 Missense_Mutation p.R25Q 0.48 tolerated(0.05) probably_damaging(0.992) TCGA-XF-A9T0-01 3 169802272 169802272 C T GPR160 Missense_Mutation p.S171F 0.53 tolerated(0.16) benign(0.014) TCGA-XF-A9T0-01 3 170744476 170744476 C G SLC2A2 5'UTR 0.51 TCGA-XF-A9T0-01 3 170784513 170784513 A G TNIK Silent p.N1237N 0.50 TCGA-XF-A9T0-01 3 176752053 176752053 A C TBL1XR1 Missense_Mutation p.Y395D 0.24 deleterious(0) probably_damaging(0.994) TCGA-XF-A9T0-01 3 178936095 178936095 A C PIK3CA Missense_Mutation p.Q546P 0.68 deleterious(0.01) probably_damaging(0.993) TCGA-XF-A9T0-01 3 179322679 179322679 C T NDUFB5 Missense_Mutation p.R26C 0.35 tolerated(0.12) probably_damaging(0.912) TCGA-XF-A9T0-01 3 180326615 180326615 A T TTC14 Intron 0.71 TCGA-XF-A9T0-01 3 181430266 181430266 C T SOX2 Missense_Mutation p.R40C 0.17 deleterious(0) probably_damaging(0.972) TCGA-XF-A9T0-01 3 185252775 185252775 C T LIPH Silent p.L65L 0.09 TCGA-XF-A9T0-01 3 186038187 186038187 G C DGKG Nonsense_Mutation p.S21* 0.10 TCGA-XF-A9T0-01 3 190106205 190106205 G C CLDN16 Missense_Mutation p.W99C 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 3 190167662 190167662 A G TMEM207 5'UTR 0.68 TCGA-XF-A9T0-01 3 195785154 195785154 C A TFRC Splice_Site p.X559_splice 0.18 TCGA-XF-A9T0-01 3 19961389 19961389 C G EFHB Missense_Mutation p.R311T 0.47 deleterious(0.03) benign(0.146) TCGA-XF-A9T0-01 3 27462229 27462229 C A SLC4A7 Nonsense_Mutation p.E483* 0.37 TCGA-XF-A9T0-01 3 27463169 27463169 C T SLC4A7 Silent p.V447V 0.31 TCGA-XF-A9T0-01 3 38354935 38354935 T C SLC22A14 Silent p.N374N 0.45 TCGA-XF-A9T0-01 3 40523412 40523412 A C ZNF619 Missense_Mutation p.Y28S 0.43 deleterious(0.01) benign(0.015) TCGA-XF-A9T0-01 3 42132911 42132911 C T TRAK1 5'UTR 0.31 TCGA-XF-A9T0-01 3 44893757 44893757 G C KIF15 Missense_Mutation p.V1344L 0.56 tolerated(0.44) benign(0.004) TCGA-XF-A9T0-01 3 45636612 45636621 GGGGGCCGCC - LIMD1 Frame_Shift_Del p.G81Wfs*14 0.62 TCGA-XF-A9T0-01 3 46026348 46026348 C G FYCO1 Missense_Mutation p.D19H 0.31 deleterious(0) probably_damaging(0.988) TCGA-XF-A9T0-01 3 48454572 48454572 C T PLXNB1 Silent p.K1514K 0.27 TCGA-XF-A9T0-01 3 49059798 49059798 C T NDUFAF3 Missense_Mutation p.R33W 0.57 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T0-01 3 49138030 49138030 G A QARS Silent p.I318I 0.50 TCGA-XF-A9T0-01 3 49293742 49293742 C T CCDC36 Missense_Mutation p.S271F 0.61 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 3 49315630 49315630 T G USP4 3'UTR 0.48 TCGA-XF-A9T0-01 3 49758659 49758659 T G RNF123 Missense_Mutation p.F1289C 0.55 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 3 49936679 49936679 G A MST1R Silent p.L416L 0.31 TCGA-XF-A9T0-01 3 50330127 50330127 G A IFRD2 5'Flank 0.18 TCGA-XF-A9T0-01 3 51475764 51475764 C G VPRBP Missense_Mutation p.M221I 0.42 tolerated(0.22) benign(0.001) TCGA-XF-A9T0-01 3 51937338 51937338 G C IQCF1 5'UTR 0.52 TCGA-XF-A9T0-01 3 52436687 52436687 C T BAP1 Missense_Mutation p.D663N 0.21 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 3 52436887 52436887 C A BAP1 Nonsense_Mutation p.E631* 0.56 TCGA-XF-A9T0-01 3 58395312 58395312 G C PXK Missense_Mutation p.E454D 0.40 tolerated(0.1) possibly_damaging(0.498) TCGA-XF-A9T0-01 3 58855162 58855162 C T C3orf67 Missense_Mutation p.E178K 0.51 tolerated(0.32) possibly_damaging(0.69) TCGA-XF-A9T0-01 3 64547276 64547276 C A ADAMTS9 Missense_Mutation p.W1559L 0.19 deleterious(0) possibly_damaging(0.839) TCGA-XF-A9T0-01 3 69104547 69104547 T C UBA3 3'UTR 0.52 TCGA-XF-A9T0-01 3 70014483 70014483 G C MITF 3'UTR 0.42 TCGA-XF-A9T0-01 3 72897468 72897468 G A SHQ1 Silent p.L8L 0.31 TCGA-XF-A9T0-01 3 78987876 78987876 C G ROBO1 Missense_Mutation p.G125A 0.56 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 3 87027780 87027780 G A VGLL3 Missense_Mutation p.S100L 0.52 deleterious(0.01) possibly_damaging(0.803) TCGA-XF-A9T0-01 3 99536754 99536754 G A CMSS1 5'UTR 0.56 TCGA-XF-A9T0-01 3 9974368 9974368 C T IL17RC Silent p.L559L 0.68 TCGA-XF-A9T0-01 3 9987919 9987919 C T PRRT3 Missense_Mutation p.E980K 0.50 deleterious(0) probably_damaging(0.994) TCGA-XF-A9T0-01 4 100009842 100009842 C T ADH5 Missense_Mutation p.E4K 0.38 tolerated(1) benign(0) TCGA-XF-A9T0-01 4 101947113 101947113 G C PPP3CA Missense_Mutation p.S492C 0.43 tolerated(0.13) possibly_damaging(0.566) TCGA-XF-A9T0-01 4 102267981 102267981 C T PPP3CA 5'UTR 0.75 TCGA-XF-A9T0-01 4 103722656 103722656 C G UBE2D3 Missense_Mutation p.D89H 0.44 deleterious_low_confidence(0.01) benign(0.401) TCGA-XF-A9T0-01 4 106861308 106861308 C T NPNT Silent p.I224I 0.52 TCGA-XF-A9T0-01 4 110880554 110880554 G C EGF Missense_Mutation p.E343Q 0.41 deleterious(0.02) probably_damaging(0.937) TCGA-XF-A9T0-01 4 114277021 114277021 G A ANK2 Missense_Mutation p.R2416Q 0.24 possibly_damaging(0.631) TCGA-XF-A9T0-01 4 114824296 114824305 TTAGAGCCAA - ARSJ Frame_Shift_Del p.L309Rfs*45 0.16 TCGA-XF-A9T0-01 4 120528239 120528239 C T PDE5A Silent p.V122V 0.53 TCGA-XF-A9T0-01 4 129128527 129128527 T C LARP1B Missense_Mutation p.F846L 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 4 129208561 129208561 C T PGRMC2 Missense_Mutation p.D153N 0.47 deleterious(0.01) possibly_damaging(0.864) TCGA-XF-A9T0-01 4 1348953 1348953 G A UVSSA Missense_Mutation p.D366N 0.92 tolerated(0.07) benign(0.126) TCGA-XF-A9T0-01 4 15780142 15780142 C T CD38 Silent p.L35L 0.57 TCGA-XF-A9T0-01 4 159894425 159894425 G A C4orf45 Nonsense_Mutation p.Q35* 0.53 TCGA-XF-A9T0-01 4 167020456 167020456 C G TLL1 Nonsense_Mutation p.S895* 0.50 TCGA-XF-A9T0-01 4 167663145 167663145 C T SPOCK3 Intron 0.46 TCGA-XF-A9T0-01 4 170190227 170190227 T G SH3RF1 Missense_Mutation p.E46A 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 4 170523735 170523735 C T NEK1 Missense_Mutation p.G16E 0.37 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 4 17814738 17814738 C A NCAPG Missense_Mutation p.P172T 0.16 deleterious(0) possibly_damaging(0.766) TCGA-XF-A9T0-01 4 178354445 178354445 T G AGA Missense_Mutation p.K288T 0.76 tolerated(0.52) benign(0.017) TCGA-XF-A9T0-01 4 184367276 184367276 G A CDKN2AIP Missense_Mutation p.E147K 0.80 deleterious(0.03) unknown(0) TCGA-XF-A9T0-01 4 20731719 20731719 C G KCNIP4 Missense_Mutation p.E247Q 0.50 tolerated(0.1) possibly_damaging(0.649) TCGA-XF-A9T0-01 4 24538738 24538738 C T DHX15 Missense_Mutation p.M615I 0.34 tolerated(0.09) benign(0.042) TCGA-XF-A9T0-01 4 24544626 24544626 T C DHX15 Silent p.A424A 0.62 TCGA-XF-A9T0-01 4 30724325 30724325 C A PCDH7 Missense_Mutation p.D427E 0.50 tolerated(0.05) possibly_damaging(0.753) TCGA-XF-A9T0-01 4 36163084 36163084 C G ARAP2 Intron 0.45 TCGA-XF-A9T0-01 4 4228400 4228400 C A OTOP1 Missense_Mutation p.Q64H 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 4 48096193 48096193 G A TXK Nonsense_Mutation p.Q204* 0.48 TCGA-XF-A9T0-01 4 48548151 48548151 T A FRYL Missense_Mutation p.N1738Y 0.55 deleterious(0.03) benign(0.278) TCGA-XF-A9T0-01 4 53730719 53730719 C T RASL11B Nonsense_Mutation p.Q92* 0.39 TCGA-XF-A9T0-01 4 6578364 6578364 C T MAN2B2 Silent p.R66R 0.70 TCGA-XF-A9T0-01 4 6718464 6718464 G A BLOC1S4 Silent p.T176T 0.16 TCGA-XF-A9T0-01 4 68539451 68539451 G A UBA6 Silent p.I170I 0.46 TCGA-XF-A9T0-01 4 69533876 69533876 C T UGT2B15 Missense_Mutation p.G252E 0.32 deleterious(0.02) benign(0.247) TCGA-XF-A9T0-01 4 72397884 72397884 G A SLC4A4 Missense_Mutation p.E758K 0.38 tolerated(0.29) possibly_damaging(0.596) TCGA-XF-A9T0-01 4 7435876 7435876 G T PSAPL1 Missense_Mutation p.P244Q 0.49 deleterious(0.02) possibly_damaging(0.865) TCGA-XF-A9T0-01 4 76481262 76481262 G A C4orf26 5'Flank 0.45 TCGA-XF-A9T0-01 4 77097609 77097609 C T SCARB2 Missense_Mutation p.V229M 0.34 tolerated(0.15) possibly_damaging(0.497) TCGA-XF-A9T0-01 4 7840338 7840338 C T AFAP1 Silent p.K213K 0.54 TCGA-XF-A9T0-01 4 79296937 79296937 C A FRAS1 Missense_Mutation p.H1066N 0.18 benign(0.004) TCGA-XF-A9T0-01 4 84457880 84457880 C G AGPAT9 Silent p.S35S 0.45 TCGA-XF-A9T0-01 4 88959424 88959424 G A PKD2 Missense_Mutation p.D289N 0.54 tolerated(0.26) benign(0.078) TCGA-XF-A9T0-01 4 95376511 95376511 C T PDLIM5 Silent p.F24F 0.24 TCGA-XF-A9T0-01 4 96051172 96051172 C T BMPR1B Nonsense_Mutation p.Q279* 0.33 TCGA-XF-A9T0-01 5 101572518 101572518 G C SLCO4C1 3'UTR 0.41 TCGA-XF-A9T0-01 5 101709073 101709073 C T SLCO6A1 Missense_Mutation p.E715K 0.38 tolerated(0.12) benign(0.005) TCGA-XF-A9T0-01 5 10256234 10256234 C G CCT5 Missense_Mutation p.Q167E 0.63 tolerated(0.23) benign(0.011) TCGA-XF-A9T0-01 5 110427895 110427895 G A WDR36 5'UTR 0.47 TCGA-XF-A9T0-01 5 110427940 110427940 C T WDR36 5'UTR 0.50 TCGA-XF-A9T0-01 5 110428081 110428081 T C WDR36 Missense_Mutation p.L32P 0.42 tolerated_low_confidence(0.22) benign(0) TCGA-XF-A9T0-01 5 112860756 112860756 G A YTHDC2 Silent p.L119L 0.34 TCGA-XF-A9T0-01 5 11397263 11397263 C A CTNND2 Silent p.G164G 0.39 TCGA-XF-A9T0-01 5 114462550 114462550 C T TRIM36 Missense_Mutation p.E613K 0.40 deleterious(0) possibly_damaging(0.697) TCGA-XF-A9T0-01 5 130799825 130799825 C T RAPGEF6 Missense_Mutation p.E797K 0.32 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 5 1344470 1344470 C T CLPTM1L Missense_Mutation p.E87K 0.35 tolerated(0.09) benign(0.142) TCGA-XF-A9T0-01 5 135651367 135651367 T C TRPC7 Missense_Mutation p.D294G 0.31 deleterious(0.02) benign(0.013) TCGA-XF-A9T0-01 5 137525547 137525547 G A CDC23 Silent p.I491I 0.41 TCGA-XF-A9T0-01 5 140012673 140012673 G A CD14 5'UTR 0.44 TCGA-XF-A9T0-01 5 140731170 140731170 T G PCDHGB1 Missense_Mutation p.F448C 0.34 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 5 140788518 140788518 G C PCDHGB6 Missense_Mutation p.S250T 0.21 tolerated(0.22) benign(0.19) TCGA-XF-A9T0-01 5 141248787 141248787 G A PCDH1 Missense_Mutation p.P84S 0.37 tolerated(0.38) probably_damaging(0.999) TCGA-XF-A9T0-01 5 143549507 143549507 C T YIPF5 Missense_Mutation p.E5K 0.30 tolerated(0.72) benign(0.014) TCGA-XF-A9T0-01 5 145888726 145888726 G A TCERG1 Missense_Mutation p.E1005K 0.39 tolerated(0.29) unknown(0) TCGA-XF-A9T0-01 5 150668014 150668014 A T SLC36A3 Nonsense_Mutation p.L182* 0.45 TCGA-XF-A9T0-01 5 150946973 150946973 A C FAT2 Missense_Mutation p.I507S 0.29 probably_damaging(0.949) TCGA-XF-A9T0-01 5 159820958 159820958 C T C5orf54 Missense_Mutation p.E514K 0.36 tolerated(0.1) benign(0.429) TCGA-XF-A9T0-01 5 171773171 171773171 C T SH3PXD2B Missense_Mutation p.G386D 0.37 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 5 172359485 172359485 T G ERGIC1 Nonsense_Mutation p.Y196* 0.51 TCGA-XF-A9T0-01 5 172590824 172590824 G A BNIP1 Missense_Mutation p.R239H 0.42 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 5 175395180 175395180 G T THOC3 Nonsense_Mutation p.S11* 0.42 TCGA-XF-A9T0-01 5 175717039 175717039 G T SIMC1 Intron 0.25 TCGA-XF-A9T0-01 5 175916018 175916018 G A FAF2 Missense_Mutation p.D112N 0.40 tolerated(0.25) benign(0.025) TCGA-XF-A9T0-01 5 176882880 176882880 G A PRR7 Missense_Mutation p.E195K 0.32 tolerated(0.34) probably_damaging(0.956) TCGA-XF-A9T0-01 5 179047915 179047915 T G HNRNPH1 Missense_Mutation p.E125D 0.41 tolerated(0.08) possibly_damaging(0.741) TCGA-XF-A9T0-01 5 179192406 179192406 A T MAML1 Missense_Mutation p.D132V 0.45 deleterious(0) probably_damaging(0.965) TCGA-XF-A9T0-01 5 180666172 180666172 C T GNB2L1 Nonsense_Mutation p.W177* 0.51 TCGA-XF-A9T0-01 5 19747210 19747210 T C CDH18 Missense_Mutation p.T122A 0.26 tolerated(1) benign(0.005) TCGA-XF-A9T0-01 5 31526191 31526191 C G DROSHA Silent p.R283R 0.51 TCGA-XF-A9T0-01 5 34929961 34929961 G A DNAJC21 Missense_Mutation p.D13N 0.35 tolerated(0.31) benign(0.058) TCGA-XF-A9T0-01 5 37153898 37153898 C T C5orf42 Missense_Mutation p.E2719K 0.59 tolerated(0.06) benign(0.22) TCGA-XF-A9T0-01 5 38991175 38991175 C T RICTOR Missense_Mutation p.M153I 0.29 tolerated(0.94) benign(0.023) TCGA-XF-A9T0-01 5 39285270 39285270 C G C9 3'UTR 0.27 TCGA-XF-A9T0-01 5 40681751 40681751 G A PTGER4 Missense_Mutation p.R219H 0.22 deleterious(0.01) possibly_damaging(0.581) TCGA-XF-A9T0-01 5 40841455 40841455 A G CARD6 5'UTR 0.59 TCGA-XF-A9T0-01 5 454015 454015 C T EXOC3 Nonsense_Mutation p.Q299* 0.26 TCGA-XF-A9T0-01 5 50093022 50093022 G A PARP8 Silent p.V510V 0.34 TCGA-XF-A9T0-01 5 5461441 5461441 C T KIAA0947 Missense_Mutation p.S665F 0.33 tolerated(0.15) benign(0.004) TCGA-XF-A9T0-01 5 6749716 6749716 C T PAPD7 Missense_Mutation p.R295W 0.25 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 5 68715299 68715299 A G MARVELD2 Silent p.R29R 0.42 TCGA-XF-A9T0-01 5 74685422 74685422 T C COL4A3BP Missense_Mutation p.M555V 0.38 deleterious(0.03) possibly_damaging(0.842) TCGA-XF-A9T0-01 5 75871571 75871571 G A IQGAP2 Missense_Mutation p.M145I 0.34 tolerated(0.06) benign(0.088) TCGA-XF-A9T0-01 5 79033157 79033157 G A CMYA5 Missense_Mutation p.D2857N 0.41 benign(0.005) TCGA-XF-A9T0-01 6 11232730 11232761 CTCTTACCTTATACTTCATTTCGGCAGCGGTG - NEDD9 Splice_Site 0.68 TCGA-XF-A9T0-01 6 116600549 116600549 C T TSPYL1 Missense_Mutation p.E149K 0.70 tolerated(1) benign(0) TCGA-XF-A9T0-01 6 117888122 117888122 C T GOPC Missense_Mutation p.D385N 0.80 tolerated(0.06) benign(0.188) TCGA-XF-A9T0-01 6 127797157 127797157 G A SOGA3 Missense_Mutation p.R672C 0.65 deleterious(0.01) probably_damaging(0.993) TCGA-XF-A9T0-01 6 134303959 134303959 G A TBPL1 Missense_Mutation p.E75K 0.63 tolerated(0.11) benign(0.033) TCGA-XF-A9T0-01 6 138539254 138539262 GGAACCTTT - PBOV1 In_Frame_Del p.K91_S93del 0.65 TCGA-XF-A9T0-01 6 147637507 147637507 C T STXBP5 Missense_Mutation p.S589L 0.67 tolerated(0.14) benign(0.018) TCGA-XF-A9T0-01 6 152555041 152555041 C A SYNE1 Nonsense_Mutation p.G6863* 0.59 TCGA-XF-A9T0-01 6 153365047 153365047 C T RGS17 Missense_Mutation p.C36Y 0.67 deleterious(0.02) probably_damaging(0.971) TCGA-XF-A9T0-01 6 155732380 155732380 G A NOX3 Missense_Mutation p.H475Y 0.77 tolerated(0.11) possibly_damaging(0.887) TCGA-XF-A9T0-01 6 20758834 20758834 G A CDKAL1 Silent p.Q159Q 0.51 TCGA-XF-A9T0-01 6 25923931 25923931 C T SLC17A2 Missense_Mutation p.D78N 0.59 tolerated(0.63) benign(0.001) TCGA-XF-A9T0-01 6 26017759 26017759 C T HIST1H1A Missense_Mutation p.A68T 0.66 deleterious(0.01) benign(0.285) TCGA-XF-A9T0-01 6 26502044 26502044 C T BTN1A1 Silent p.I102I 0.43 TCGA-XF-A9T0-01 6 26502086 26502086 C T BTN1A1 Silent p.V116V 0.46 TCGA-XF-A9T0-01 6 26507021 26507021 G T BTN1A1 Nonsense_Mutation p.E274* 0.24 TCGA-XF-A9T0-01 6 28121657 28121657 C T ZKSCAN8 Silent p.L533L 0.54 TCGA-XF-A9T0-01 6 29527519 29527519 A G UBD 5'UTR 0.43 TCGA-XF-A9T0-01 6 30080562 30080562 C T TRIM31 Silent p.V7V 0.42 TCGA-XF-A9T0-01 6 30229456 30229456 G A HCG17 Intron 0.21 TCGA-XF-A9T0-01 6 30620653 30620653 A C C6orf136 Silent p.S484S 0.44 TCGA-XF-A9T0-01 6 30621093 30621093 C T DHX16 Missense_Mutation p.A1018T 0.47 tolerated(0.52) unknown(0) TCGA-XF-A9T0-01 6 30638684 30638684 C T DHX16 Nonsense_Mutation p.W164* 0.39 TCGA-XF-A9T0-01 6 31773865 31773865 T G LSM2 Missense_Mutation p.K20Q 0.61 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 6 31854445 31854445 G A EHMT2 Silent p.S752S 0.47 TCGA-XF-A9T0-01 6 31938785 31938785 C A DXO Nonsense_Mutation p.E166* 0.44 TCGA-XF-A9T0-01 6 32036388 32036388 G T TNXB Missense_Mutation p.P2000H 0.21 probably_damaging(0.999) TCGA-XF-A9T0-01 6 32157485 32157485 C T PBX2 Missense_Mutation p.E70K 0.47 deleterious(0.04) possibly_damaging(0.595) TCGA-XF-A9T0-01 6 33248616 33248616 C T WDR46 Missense_Mutation p.V422I 0.28 tolerated(0.38) possibly_damaging(0.876) TCGA-XF-A9T0-01 6 33381290 33381290 G A PHF1 Silent p.L181L 0.47 TCGA-XF-A9T0-01 6 35261675 35261675 G T ZNF76 Missense_Mutation p.G493C 0.37 deleterious(0) probably_damaging(0.982) TCGA-XF-A9T0-01 6 35927571 35927571 G T SLC26A8 Missense_Mutation p.P551T 0.44 deleterious(0) possibly_damaging(0.862) TCGA-XF-A9T0-01 6 38548141 38548141 A C BTBD9 Nonsense_Mutation p.L296* 0.30 TCGA-XF-A9T0-01 6 38723813 38723813 G C DNAH8 Missense_Mutation p.R274S 0.54 benign(0.06) TCGA-XF-A9T0-01 6 39330233 39330234 - G KIF6 Frame_Shift_Ins p.Q642Tfs*10 0.24 TCGA-XF-A9T0-01 6 42643844 42643844 G A UBR2 Silent p.G1434G 0.51 TCGA-XF-A9T0-01 6 42980947 42980965 TAGGAGTAGCCAGCTGGGC - MEA1 Frame_Shift_Del p.G64Afs*4 0.27 TCGA-XF-A9T0-01 6 43306424 43306424 C T ZNF318 Missense_Mutation p.R1771K 0.25 benign(0.005) TCGA-XF-A9T0-01 6 43604342 43604342 T G MAD2L1BP Missense_Mutation p.Y123D 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 6 44320579 44320579 C T SPATS1 Missense_Mutation p.P86S 0.08 tolerated_low_confidence(0.32) benign(0.055) TCGA-XF-A9T0-01 6 45870881 45870881 C T CLIC5 Missense_Mutation p.D393N 0.21 deleterious(0.03) probably_damaging(0.968) TCGA-XF-A9T0-01 6 46135347 46135347 A C ENPP5 Missense_Mutation p.L218R 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 6 46851384 46851384 C T GPR116 Missense_Mutation p.R175K 0.37 tolerated(0.15) benign(0.001) TCGA-XF-A9T0-01 6 51824753 51824753 T C PKHD1 Silent p.Q1941Q 0.41 TCGA-XF-A9T0-01 6 52129560 52129560 G A MCM3 Silent p.L796L 0.34 TCGA-XF-A9T0-01 6 63990696 63990696 C T LGSN Missense_Mutation p.V254I 0.34 tolerated(0.93) benign(0.08) TCGA-XF-A9T0-01 6 73952217 73952217 G A KHDC1 Silent p.L81L 0.42 TCGA-XF-A9T0-01 6 74079412 74079412 C T OOEP Missense_Mutation p.R35H 0.40 tolerated(0.31) benign(0.003) TCGA-XF-A9T0-01 6 7585849 7585849 A G DSP Missense_Mutation p.Y2785C 0.68 probably_damaging(1) TCGA-XF-A9T0-01 6 76018464 76018464 T C FILIP1 Missense_Mutation p.I1195M 0.39 deleterious(0.04) possibly_damaging(0.519) TCGA-XF-A9T0-01 6 76072544 76072544 T - FILIP1 Frame_Shift_Del p.V123Cfs*17 0.33 TCGA-XF-A9T0-01 6 76731869 76731869 G A IMPG1 Silent p.L210L 0.36 TCGA-XF-A9T0-01 6 84233553 84233553 C T PRSS35 Silent p.F131F 0.70 TCGA-XF-A9T0-01 6 84563822 84563822 G A RIPPLY2 Missense_Mutation p.D61N 0.69 tolerated(0.35) benign(0.01) TCGA-XF-A9T0-01 6 84904677 84904677 C T KIAA1009 Missense_Mutation p.D318N 0.73 tolerated(0.94) benign(0.002) TCGA-XF-A9T0-01 6 88768507 88768507 C T SPACA1 Silent p.F147F 0.52 TCGA-XF-A9T0-01 7 110763694 110763694 T C LRRN3 Missense_Mutation p.L289S 0.31 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 7 120782040 120782040 C G CPED1 Missense_Mutation p.P634A 0.85 deleterious(0.05) possibly_damaging(0.749) TCGA-XF-A9T0-01 7 128040168 128040168 G A IMPDH1 Silent p.I285I 0.78 TCGA-XF-A9T0-01 7 138145484 138145484 A G TRIM24 Missense_Mutation p.Q64R 1.00 deleterious(0.01) possibly_damaging(0.833) TCGA-XF-A9T0-01 7 138874152 138874152 G T TTC26 Missense_Mutation p.A547S 0.82 deleterious(0.02) benign(0.371) TCGA-XF-A9T0-01 7 142111456 142111456 C T TRBV5-7 Missense_Mutation p.E94K 0.82 deleterious(0.05) possibly_damaging(0.606) TCGA-XF-A9T0-01 7 144077224 144077224 G A ARHGEF5 3'UTR 0.75 TCGA-XF-A9T0-01 7 149474776 149474776 C T ZNF467 5'Flank 0.48 TCGA-XF-A9T0-01 7 149522477 149522477 C G SSPO RNA 0.06 TCGA-XF-A9T0-01 7 150814771 150814771 G A AGAP3 Missense_Mutation p.E205K 0.80 deleterious(0) probably_damaging(0.96) TCGA-XF-A9T0-01 7 150931006 150931006 A T CHPF2 5'UTR 0.70 TCGA-XF-A9T0-01 7 1516434 1516434 G T INTS1 Missense_Mutation p.Q1687K 0.93 tolerated(0.78) benign(0.027) TCGA-XF-A9T0-01 7 18705942 18705942 C T HDAC9 Missense_Mutation p.S525F 0.82 deleterious(0.04) possibly_damaging(0.694) TCGA-XF-A9T0-01 7 23391084 23391084 C G IGF2BP3 Missense_Mutation p.G175R 0.18 tolerated(0.29) benign(0.008) TCGA-XF-A9T0-01 7 24881981 24881981 T C OSBPL3 Missense_Mutation p.S440G 0.81 tolerated(0.07) probably_damaging(0.984) TCGA-XF-A9T0-01 7 25176035 25176035 C G C7orf31 Missense_Mutation p.W443C 0.16 deleterious(0.02) probably_damaging(0.955) TCGA-XF-A9T0-01 7 2564857 2564857 C G LFNG Missense_Mutation p.N162K 0.73 deleterious(0.03) benign(0.339) TCGA-XF-A9T0-01 7 27222559 27222559 A C HOXA11 Missense_Mutation p.I266M 0.83 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T0-01 7 27831685 27831685 C T TAX1BP1 Missense_Mutation p.R367W 0.16 deleterious(0.02) benign(0.014) TCGA-XF-A9T0-01 7 30496459 30496459 G T NOD1 Silent p.R27R 0.14 TCGA-XF-A9T0-01 7 30825445 30825445 C T FAM188B Missense_Mutation p.T167M 0.12 tolerated(0.18) benign(0.028) TCGA-XF-A9T0-01 7 32582775 32582775 T C AVL9 Missense_Mutation p.L39P 0.78 deleterious(0) possibly_damaging(0.824) TCGA-XF-A9T0-01 7 35943920 35943920 C T SEPT7 3'UTR 0.36 TCGA-XF-A9T0-01 7 38813721 38813721 G A VPS41 Missense_Mutation p.H336Y 0.82 tolerated(0.19) benign(0.013) TCGA-XF-A9T0-01 7 4150341 4150341 A G SDK1 Missense_Mutation p.E1124G 0.87 tolerated(0.24) benign(0.345) TCGA-XF-A9T0-01 7 42977134 42977134 G A MRPL32 Missense_Mutation p.E176K 0.85 deleterious(0.02) benign(0.323) TCGA-XF-A9T0-01 7 43832402 43832402 G A BLVRA Missense_Mutation p.E115K 0.86 tolerated(0.08) benign(0.013) TCGA-XF-A9T0-01 7 44152433 44152433 G A AEBP1 Missense_Mutation p.G832R 0.82 tolerated(0.46) possibly_damaging(0.833) TCGA-XF-A9T0-01 7 44302620 44302620 C T CAMK2B Silent p.L68L 0.84 TCGA-XF-A9T0-01 7 44560710 44560710 C T NPC1L1 Silent p.L987L 0.84 TCGA-XF-A9T0-01 7 56007112 56007112 C T ZNF713 Missense_Mutation p.L236F 0.06 tolerated(0.71) possibly_damaging(0.64) TCGA-XF-A9T0-01 7 5632865 5632865 C T FSCN1 Missense_Mutation p.R100C 0.68 deleterious(0.03) probably_damaging(1) TCGA-XF-A9T0-01 7 63709529 63709529 G C ZNF679 Missense_Mutation p.E12Q 0.86 deleterious(0.02) benign(0.007) TCGA-XF-A9T0-01 7 7612527 7612527 T C MIOS Missense_Mutation p.S141P 0.76 tolerated(0.07) probably_damaging(0.991) TCGA-XF-A9T0-01 7 91851266 91851266 G A KRIT1 Nonsense_Mutation p.Q505* 0.80 TCGA-XF-A9T0-01 7 92130940 92130940 G A PEX1 Missense_Mutation p.L822F 0.79 deleterious(0.02) benign(0.035) TCGA-XF-A9T0-01 7 99957141 99957141 G A PILRB Silent p.L212L 0.78 TCGA-XF-A9T0-01 8 100654272 100654272 A T VPS13B Silent p.A1843A 0.72 TCGA-XF-A9T0-01 8 101008723 101008723 T C RGS22 Silent p.L995L 0.19 TCGA-XF-A9T0-01 8 101146441 101146441 A G FBXO43 Missense_Mutation p.L609P 0.25 tolerated(0.2) benign(0.005) TCGA-XF-A9T0-01 8 101299924 101299924 C T RNF19A Missense_Mutation p.R160Q 0.69 tolerated(0.27) benign(0.143) TCGA-XF-A9T0-01 8 102381254 102381254 A G NACAP1 RNA 0.67 TCGA-XF-A9T0-01 8 102381312 102381312 G A NACAP1 RNA 0.68 TCGA-XF-A9T0-01 8 102504934 102504934 G A GRHL2 5'UTR 0.64 TCGA-XF-A9T0-01 8 104080889 104080889 G A ATP6V1C1 Missense_Mutation p.D355N 0.26 deleterious(0.01) possibly_damaging(0.889) TCGA-XF-A9T0-01 8 104438289 104438289 T G DCAF13 Silent p.G280G 0.14 TCGA-XF-A9T0-01 8 110099894 110099894 G A TRHR Missense_Mutation p.M51I 0.54 deleterious(0.04) benign(0.001) TCGA-XF-A9T0-01 8 110257578 110257578 C G NUDCD1 Missense_Mutation p.E478Q 0.21 tolerated(0.25) benign(0.065) TCGA-XF-A9T0-01 8 110499044 110499044 T G PKHD1L1 Missense_Mutation p.F3292V 0.10 deleterious(0) benign(0.055) TCGA-XF-A9T0-01 8 119122795 119122795 T G EXT1 Missense_Mutation p.D164A 0.63 deleterious(0.01) probably_damaging(1) TCGA-XF-A9T0-01 8 123966220 123966220 G A ZHX2 Missense_Mutation p.E824K 0.59 deleterious_low_confidence(0.02) benign(0.001) TCGA-XF-A9T0-01 8 124351687 124351687 C A ATAD2 Splice_Site p.X907_splice 0.13 TCGA-XF-A9T0-01 8 124382202 124382202 C T ATAD2 Missense_Mutation p.D264N 0.67 tolerated(0.22) benign(0.006) TCGA-XF-A9T0-01 8 12946024 12946024 G A DLC1 Missense_Mutation p.H1422Y 0.75 deleterious(0) possibly_damaging(0.907) TCGA-XF-A9T0-01 8 144392342 144392342 C G TOP1MT Missense_Mutation p.Q533H 0.15 tolerated(0.06) benign(0.129) TCGA-XF-A9T0-01 8 144461997 144461997 A G RHPN1 Splice_Site p.X316_splice 0.61 TCGA-XF-A9T0-01 8 144732517 144732517 G T ZNF623 Missense_Mutation p.G159C 0.14 deleterious(0) possibly_damaging(0.677) TCGA-XF-A9T0-01 8 144808766 144808766 C T FAM83H Silent p.P955P 0.71 TCGA-XF-A9T0-01 8 144812503 144812503 G A FAM83H Missense_Mutation p.L84F 0.53 tolerated(0.69) benign(0.26) TCGA-XF-A9T0-01 8 144895056 144895056 C G SCRIB Missense_Mutation p.G240R 0.14 probably_damaging(0.985) TCGA-XF-A9T0-01 8 145160558 145160558 C T MAF1 5'UTR 0.18 TCGA-XF-A9T0-01 8 17611487 17611487 C T MTUS1 Silent p.S610S 0.72 TCGA-XF-A9T0-01 8 17830013 17830013 G A PCM1 Missense_Mutation p.D1254N 0.82 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T0-01 8 2057293 2057293 A T MYOM2 Missense_Mutation p.I1051F 0.67 tolerated(1) possibly_damaging(0.873) TCGA-XF-A9T0-01 8 30697461 30697461 G A TEX15 Missense_Mutation p.T2345I 0.66 deleterious(0.01) possibly_damaging(0.504) TCGA-XF-A9T0-01 8 30938709 30938709 G A WRN Missense_Mutation p.R389K 0.62 tolerated(0.09) benign(0.081) TCGA-XF-A9T0-01 8 3257015 3257015 A T CSMD1 Missense_Mutation p.V768D 0.75 possibly_damaging(0.837) TCGA-XF-A9T0-01 8 37599316 37599316 G C ERLIN2 Missense_Mutation p.K72N 0.56 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9T0-01 8 43048974 43048974 T C HGSNAT Silent p.F484F 0.21 TCGA-XF-A9T0-01 8 43054554 43054554 G A HGSNAT Missense_Mutation p.V584I 0.41 tolerated(0.19) benign(0.081) TCGA-XF-A9T0-01 8 57080766 57080766 C T PLAG1 Silent p.G21G 0.57 TCGA-XF-A9T0-01 8 67047378 67047378 C A TRIM55 Missense_Mutation p.F165L 0.25 deleterious(0.03) possibly_damaging(0.803) TCGA-XF-A9T0-01 8 68062083 68062083 G A CSPP1 Missense_Mutation p.E676K 0.60 deleterious(0.02) probably_damaging(0.991) TCGA-XF-A9T0-01 8 81411808 81411828 TGCGACAACTAAATGAACAGA - ZBTB10 In_Frame_Del p.L351_Q357del 0.62 TCGA-XF-A9T0-01 8 82751969 82751969 C T SNX16 Missense_Mutation p.E85K 0.65 deleterious(0) possibly_damaging(0.77) TCGA-XF-A9T0-01 8 87591352 87591352 A G CNGB3 Missense_Mutation p.I637T 0.22 deleterious(0) benign(0.119) TCGA-XF-A9T0-01 8 90937348 90937348 C A OSGIN2 Nonsense_Mutation p.S413* 0.17 TCGA-XF-A9T0-01 8 95186187 95186187 A T CDH17 Nonsense_Mutation p.Y207* 0.33 TCGA-XF-A9T0-01 8 95952366 95952366 G C TP53INP1 Silent p.V65V 0.13 TCGA-XF-A9T0-01 8 99019343 99019343 C T MATN2 Silent p.H446H 0.68 TCGA-XF-A9T0-01 8 99440655 99440655 G A KCNS2 Missense_Mutation p.E150K 0.23 deleterious(0) probably_damaging(0.971) TCGA-XF-A9T0-01 9 100965644 100965644 A T TBC1D2 Missense_Mutation p.F733I 0.24 deleterious(0) probably_damaging(1) TCGA-XF-A9T0-01 9 103060229 103060229 G C INVS Missense_Mutation p.E1010Q 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.72) TCGA-XF-A9T0-01 9 114454047 114454047 C T C9orf84 Missense_Mutation p.E1340K 0.28 deleterious(0.05) possibly_damaging(0.74) TCGA-XF-A9T0-01 9 115652437 115652437 G A SLC46A2 Silent p.L175L 0.30 TCGA-XF-A9T0-01 9 115652813 115652813 G A SLC46A2 Missense_Mutation p.T50I 0.54 tolerated(0.2) benign(0.003) TCGA-XF-A9T0-01 9 117129888 117129888 C T AKNA Missense_Mutation p.E555K 0.26 tolerated(1) benign(0) TCGA-XF-A9T0-01 9 123924243 123924243 G A CNTRL Silent p.V1733V 0.35 TCGA-XF-A9T0-01 9 127639266 127639266 C G ARPC5L 3'UTR 0.75 TCGA-XF-A9T0-01 9 129642680 129642680 G A ZBTB34 Silent p.L330L 0.23 TCGA-XF-A9T0-01 9 130210854 130210854 C T RPL12 Intron 0.64 TCGA-XF-A9T0-01 9 130549879 130549879 G A CDK9 Missense_Mutation p.R86Q 0.31 tolerated(0.11) benign(0.161) TCGA-XF-A9T0-01 9 130941385 130941385 C G CIZ1 Missense_Mutation p.Q367H 0.57 deleterious_low_confidence(0.03) benign(0.325) TCGA-XF-A9T0-01 9 131073221 131073221 C A TRUB2 Silent p.P205P 0.41 TCGA-XF-A9T0-01 9 131256911 131256911 C T ODF2 Silent p.I625I 0.21 TCGA-XF-A9T0-01 9 131865326 131865326 C T CRAT Missense_Mutation p.E144K 0.53 tolerated(0.28) benign(0.013) TCGA-XF-A9T0-01 9 132597536 132597536 C T C9orf78 5'UTR 0.41 TCGA-XF-A9T0-01 9 132741645 132741645 G A FNBP1 Missense_Mutation p.S50L 0.43 tolerated(0.11) benign(0.1) TCGA-XF-A9T0-01 9 132837975 132837975 G C GPR107 Missense_Mutation p.V68L 0.15 tolerated(0.19) benign(0.009) TCGA-XF-A9T0-01 9 134351455 134351455 C T PRRC2B Silent p.F1313F 0.46 TCGA-XF-A9T0-01 9 135203009 135203009 T G SETX Missense_Mutation p.T1326P 0.49 deleterious(0.03) benign(0.031) TCGA-XF-A9T0-01 9 135458576 135458593 CCAAGGCCGCGGAGGACT - BARHL1 In_Frame_Del p.A131_F137delinsV 0.42 TCGA-XF-A9T0-01 9 136233520 136233520 G A SURF4 Silent p.F89F 0.20 TCGA-XF-A9T0-01 9 138377461 138377461 G A PPP1R26 Missense_Mutation p.E369K 0.44 deleterious(0.02) possibly_damaging(0.801) TCGA-XF-A9T0-01 9 138713576 138713576 C A CAMSAP1 Missense_Mutation p.E977D 0.19 tolerated(0.29) benign(0.001) TCGA-XF-A9T0-01 9 139371833 139371833 G A SEC16A Nonsense_Mutation p.Q79* 0.62 TCGA-XF-A9T0-01 9 139701263 139701263 G A CCDC183 Missense_Mutation p.E445K 0.14 deleterious(0.04) probably_damaging(0.943) TCGA-XF-A9T0-01 9 139840549 139840549 G A C8G Missense_Mutation p.R120Q 0.45 tolerated(0.13) benign(0.405) TCGA-XF-A9T0-01 9 141016230 141016230 G A CACNA1B Missense_Mutation p.E2267K 0.28 tolerated(0.44) possibly_damaging(0.449) TCGA-XF-A9T0-01 9 19126308 19126308 C T PLIN2 Splice_Site p.X11_splice 0.50 TCGA-XF-A9T0-01 9 19379706 19379706 C T RPS6 Intron 0.36 TCGA-XF-A9T0-01 9 19379760 19379760 T G RPS6 Intron 0.44 TCGA-XF-A9T0-01 9 214920 214920 C T C9orf66 Silent p.L159L 0.55 TCGA-XF-A9T0-01 9 2824754 2824754 C T KIAA0020 Missense_Mutation p.R366K 0.17 deleterious(0.02) benign(0.059) TCGA-XF-A9T0-01 9 33676557 33676557 G A PTENP1 RNA 0.49 TCGA-XF-A9T0-01 9 33923031 33923031 C T UBAP2 Missense_Mutation p.G1002E 0.50 deleterious(0) unknown(0) TCGA-XF-A9T0-01 9 34263154 34263154 C G KIF24 Missense_Mutation p.R487P 0.22 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T0-01 9 34659801 34659801 G A IL11RA Missense_Mutation p.G286R 0.44 deleterious(0) probably_damaging(0.91) TCGA-XF-A9T0-01 9 35720214 35720214 G A TLN1 Missense_Mutation p.S429L 0.28 deleterious(0) benign(0.001) TCGA-XF-A9T0-01 9 35733232 35733232 G A CREB3 Missense_Mutation p.E100K 0.21 tolerated(0.08) benign(0.406) TCGA-XF-A9T0-01 9 4576109 4576109 C T SLC1A1 Silent p.L328L 0.66 TCGA-XF-A9T0-01 9 6241783 6241783 G A IL33 Missense_Mutation p.G30E 0.28 tolerated(0.15) benign(0.023) TCGA-XF-A9T0-01 9 71628734 71628734 T C PRKACG Missense_Mutation p.E92G 0.53 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T0-01 9 71628736 71628736 G C PRKACG Missense_Mutation p.N91K 0.51 deleterious(0) probably_damaging(0.986) TCGA-XF-A9T0-01 9 94817720 94817720 C T SPTLC1 Missense_Mutation p.M249I 0.55 tolerated(0.18) benign(0.003) TCGA-XF-A9T0-01 9 968121 968121 C T DMRT1 Silent p.V368V 0.24 TCGA-XF-A9T0-01 X 100542468 100542468 G A TAF7L Silent p.L108L 0.81 TCGA-XF-A9T0-01 X 105153494 105153494 C T NRK Nonsense_Mutation p.Q622* 0.89 TCGA-XF-A9T0-01 X 11781934 11781934 G A MSL3 Missense_Mutation p.R262K 0.86 deleterious(0.01) probably_damaging(0.946) TCGA-XF-A9T0-01 X 118221635 118221635 T C KIAA1210 Silent p.S1186S 0.90 TCGA-XF-A9T0-01 X 118986952 118986952 C T UPF3B 5'UTR 0.84 TCGA-XF-A9T0-01 X 132548972 132548972 C T GPC4 Missense_Mutation p.A8T 0.79 tolerated(0.73) benign(0.001) TCGA-XF-A9T0-01 X 135957117 135957117 G A RBMX Intron 0.83 TCGA-XF-A9T0-01 X 138644015 138644015 T A F9 Missense_Mutation p.Y391N 0.27 tolerated(0.3) benign(0.409) TCGA-XF-A9T0-01 X 140271183 140271183 C T LDOC1 Silent p.L8L 0.90 TCGA-XF-A9T0-01 X 147582556 147582556 G A AFF2 5'UTR 0.62 TCGA-XF-A9T0-01 X 153001576 153001576 C T ABCD1 Silent p.A364A 0.85 TCGA-XF-A9T0-01 X 153626709 153626709 G A RPL10 5'UTR 0.94 TCGA-XF-A9T0-01 X 44942728 44942728 T C KDM6A Missense_Mutation p.L1103P 0.92 deleterious(0) probably_damaging(0.966) TCGA-XF-A9T0-01 X 53240688 53240688 G C KDM5C Silent p.P464P 0.47 TCGA-XF-A9T0-01 X 53441927 53441927 C T SMC1A Intron 0.89 TCGA-XF-A9T0-01 X 55650327 55650327 G A FOXR2 Silent p.Q61Q 0.72 TCGA-XF-A9T0-01 X 57020847 57020847 T C SPIN3 Silent p.L178L 0.93 TCGA-XF-A9T0-01 X 66788824 66788824 C T AR Intron 0.85 TCGA-XF-A9T0-01 X 8501007 8501007 T C KAL1 3'UTR 0.69 TCGA-XF-A9T2-01 10 113933459 113933459 G C GPAM Missense_Mutation p.I186M 0.53 deleterious(0.02) probably_damaging(0.974) TCGA-XF-A9T2-01 10 121336637 121336637 G C TIAL1 Missense_Mutation p.C289W 0.55 deleterious(0) probably_damaging(1) TCGA-XF-A9T2-01 10 123258034 123258034 A T FGFR2 Missense_Mutation p.N550K 0.33 deleterious(0) probably_damaging(1) TCGA-XF-A9T2-01 10 44873246 44873246 C T CXCL12 Missense_Mutation p.R125H 0.53 tolerated_low_confidence(0.06) probably_damaging(0.922) TCGA-XF-A9T2-01 10 90074274 90074274 C T RNLS Silent p.P275P 0.34 TCGA-XF-A9T2-01 10 96971707 96971707 G C C10orf129 Silent p.L276L 0.44 TCGA-XF-A9T2-01 11 103349883 103349883 G T DYNC2H1 Nonsense_Mutation p.E4283* 0.32 TCGA-XF-A9T2-01 11 119244116 119244116 C T USP2 Silent p.S25S 0.32 TCGA-XF-A9T2-01 11 124875086 124875086 G C CCDC15 Missense_Mutation p.E797Q 0.64 tolerated(0.14) possibly_damaging(0.822) TCGA-XF-A9T2-01 11 591414 591414 C G PHRF1 Missense_Mutation p.L151V 0.38 tolerated(0.81) benign(0.002) TCGA-XF-A9T2-01 11 596980 596980 C T PHRF1 Silent p.F226F 0.42 TCGA-XF-A9T2-01 11 598428 598428 C T PHRF1 Missense_Mutation p.A317V 0.23 tolerated(0.52) benign(0.428) TCGA-XF-A9T2-01 11 598443 598443 C G PHRF1 Missense_Mutation p.T322S 0.25 deleterious(0.04) possibly_damaging(0.551) TCGA-XF-A9T2-01 11 61083813 61083813 C T DDB1 Missense_Mutation p.V452M 0.44 tolerated(0.18) possibly_damaging(0.632) TCGA-XF-A9T2-01 11 6220918 6220918 G A OR52W1 Silent p.L155L 0.48 TCGA-XF-A9T2-01 11 62566145 62566145 C A NXF1 Intron 0.43 TCGA-XF-A9T2-01 11 92570927 92570927 C A FAT3 Missense_Mutation p.D3441E 0.53 possibly_damaging(0.724) TCGA-XF-A9T2-01 12 121746393 121746393 G A ANAPC5 Missense_Mutation p.L720F 0.39 deleterious(0.01) possibly_damaging(0.894) TCGA-XF-A9T2-01 12 124270320 124270320 G A DNAH10 Missense_Mutation p.V359M 0.44 possibly_damaging(0.707) TCGA-XF-A9T2-01 12 16189270 16189270 C G DERA Silent p.L285L 0.49 TCGA-XF-A9T2-01 12 49425098 49425098 G A KMT2D Nonsense_Mutation p.Q4464* 0.43 TCGA-XF-A9T2-01 12 49432453 49432453 G A KMT2D Missense_Mutation p.P2896S 0.46 benign(0.444) TCGA-XF-A9T2-01 14 105406683 105406683 C G AHNAK2 Missense_Mutation p.K5035N 0.44 possibly_damaging(0.787) TCGA-XF-A9T2-01 14 33294003 33294003 A G AKAP6 3'UTR 0.54 TCGA-XF-A9T2-01 15 43622424 43622424 G C LCMT2 Silent p.L88L 0.32 TCGA-XF-A9T2-01 15 43622444 43622444 G A LCMT2 Missense_Mutation p.R82C 0.37 deleterious(0.02) possibly_damaging(0.75) TCGA-XF-A9T2-01 15 75094855 75094855 C T CSK 3'UTR 0.41 TCGA-XF-A9T2-01 15 81584977 81584977 C T IL16 Missense_Mutation p.R501C 0.50 deleterious(0) probably_damaging(0.944) TCGA-XF-A9T2-01 15 91136982 91136982 C T CRTC3 Nonsense_Mutation p.R116* 0.50 TCGA-XF-A9T2-01 15 91447503 91447503 C T MAN2A2 Silent p.L22L 0.42 TCGA-XF-A9T2-01 16 1261806 1261806 G A CACNA1H Splice_Site p.X1522_splice 0.37 TCGA-XF-A9T2-01 16 16251606 16251606 C T ABCC6 Missense_Mutation p.E1266K 0.21 tolerated(0.05) benign(0.017) TCGA-XF-A9T2-01 16 71604297 71604297 G A TAT Nonsense_Mutation p.R306* 0.33 TCGA-XF-A9T2-01 16 8890052 8890052 C G TMEM186 Silent p.L133L 0.63 TCGA-XF-A9T2-01 16 89350022 89350022 C T ANKRD11 Silent p.L976L 0.42 TCGA-XF-A9T2-01 16 9862756 9862756 G A GRIN2A Silent p.F849F 0.49 TCGA-XF-A9T2-01 17 27185161 27185161 C T ERAL1 Intron 0.41 TCGA-XF-A9T2-01 17 27188448 27188448 C T ERAL1 3'Flank 0.40 TCGA-XF-A9T2-01 17 3656619 3656619 C G ITGAE Missense_Mutation p.E545Q 0.46 deleterious(0) possibly_damaging(0.798) TCGA-XF-A9T2-01 17 3657114 3657114 C G ITGAE Missense_Mutation p.R497T 0.34 tolerated(0.71) benign(0.001) TCGA-XF-A9T2-01 17 3920971 3920971 C T ZZEF1 Silent p.Q2565Q 0.40 TCGA-XF-A9T2-01 17 41341805 41341805 C T NBR1 Silent p.V227V 0.41 TCGA-XF-A9T2-01 17 41342757 41342757 C G NBR1 Missense_Mutation p.S276C 0.45 deleterious(0.01) benign(0.027) TCGA-XF-A9T2-01 17 43585743 43585743 G C LRRC37A4P RNA 0.83 TCGA-XF-A9T2-01 17 48628108 48628108 C A SPATA20 Missense_Mutation p.P405T 0.38 tolerated(0.63) probably_damaging(0.988) TCGA-XF-A9T2-01 17 57278991 57278991 G A PRR11 Silent p.%3D 0.43 TCGA-XF-A9T2-01 17 77075620 77075620 C T ENGASE Nonsense_Mutation p.Q156* 0.31 TCGA-XF-A9T2-01 18 9950543 9950543 C T VAPA Missense_Mutation p.S235L 0.42 tolerated(0.06) benign(0.283) TCGA-XF-A9T2-01 19 1057010 1057010 G A ABCA7 Missense_Mutation p.R1564Q 0.50 tolerated(0.13) benign(0.069) TCGA-XF-A9T2-01 19 15073037 15073037 C T SLC1A6 Missense_Mutation p.E238K 0.42 tolerated(0.2) benign(0.209) TCGA-XF-A9T2-01 19 2987370 2987370 G A TLE6 Silent p.L186L 0.51 TCGA-XF-A9T2-01 19 34843552 34843552 G C KIAA0355 Missense_Mutation p.D969H 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.759) TCGA-XF-A9T2-01 19 36362789 36362789 G A APLP1 Missense_Mutation p.G234E 0.37 tolerated(0.71) benign(0.29) TCGA-XF-A9T2-01 19 36362800 36362800 G A APLP1 Missense_Mutation p.E238K 0.32 tolerated(0.13) benign(0.204) TCGA-XF-A9T2-01 19 36362811 36362811 G A APLP1 Silent p.E241E 0.35 TCGA-XF-A9T2-01 19 36365646 36365646 G A APLP1 Missense_Mutation p.E407K 0.50 tolerated(0.18) probably_damaging(0.983) TCGA-XF-A9T2-01 19 3979840 3979840 A T EEF2 Missense_Mutation p.L524Q 0.41 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T2-01 19 54803106 54803106 G A LILRA3 Missense_Mutation p.R191C 0.39 deleterious(0.03) benign(0.02) TCGA-XF-A9T2-01 19 7805723 7805723 G C CD209 3'UTR 0.43 TCGA-XF-A9T2-01 1 110766136 110766136 C G KCNC4 Missense_Mutation p.S410C 0.25 deleterious(0) possibly_damaging(0.86) TCGA-XF-A9T2-01 1 118657936 118657936 C G SPAG17 Missense_Mutation p.K148N 0.43 tolerated(0.06) possibly_damaging(0.897) TCGA-XF-A9T2-01 1 151006312 151006312 C G PRUNE Missense_Mutation p.P322A 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-XF-A9T2-01 1 177225243 177225243 G A BRINP2 Missense_Mutation p.G153E 0.42 deleterious(0) probably_damaging(1) TCGA-XF-A9T2-01 1 180240736 180240736 G A LHX4 Intron 0.45 TCGA-XF-A9T2-01 1 183212692 183212692 G T LAMC2 3'UTR 0.36 TCGA-XF-A9T2-01 1 19582480 19582480 C T MRTO4 Silent p.I42I 0.87 TCGA-XF-A9T2-01 1 200587690 200587690 C T KIF14 Silent p.L54L 0.39 TCGA-XF-A9T2-01 1 228602800 228602800 C G TRIM17 5'UTR 0.56 TCGA-XF-A9T2-01 1 27087932 27087932 C T ARID1A Missense_Mutation p.S740F 0.68 unknown(0) TCGA-XF-A9T2-01 1 27087955 27087955 C T ARID1A Nonsense_Mutation p.Q748* 0.68 TCGA-XF-A9T2-01 1 32163712 32163712 C A COL16A1 Missense_Mutation p.G151V 0.53 unknown(0) TCGA-XF-A9T2-01 1 44778888 44778888 T C ERI3 Missense_Mutation p.I207V 0.90 tolerated(0.14) benign(0.012) TCGA-XF-A9T2-01 1 67327922 67327922 G A WDR78 Missense_Mutation p.S335L 0.33 deleterious(0.04) benign(0.006) TCGA-XF-A9T2-01 1 99771402 99771402 C T LPPR4 Silent p.L376L 0.33 TCGA-XF-A9T2-01 21 34922813 34922813 G C SON Missense_Mutation p.E426Q 0.43 benign(0.403) TCGA-XF-A9T2-01 21 36252892 36252892 C A RUNX1 Missense_Mutation p.R157I 0.35 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T2-01 22 36680477 36680477 C T MYH9 Missense_Mutation p.R1855Q 0.38 probably_damaging(0.909) TCGA-XF-A9T2-01 22 51182532 51182532 C T ACR Silent p.L203L 0.37 TCGA-XF-A9T2-01 2 122217656 122217656 C T CLASP1 Missense_Mutation p.D360N 0.35 deleterious(0) possibly_damaging(0.744) TCGA-XF-A9T2-01 2 122217688 122217688 C G CLASP1 Missense_Mutation p.R349T 0.43 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T2-01 2 170097457 170097457 G C LRP2 Intron 0.48 TCGA-XF-A9T2-01 2 46411922 46411922 G C PRKCE Missense_Mutation p.E706Q 0.23 tolerated(0.13) possibly_damaging(0.76) TCGA-XF-A9T2-01 3 113377794 113377794 G C KIAA2018 Missense_Mutation p.S912C 0.41 benign(0.006) TCGA-XF-A9T2-01 3 142094782 142094782 G A XRN1 Missense_Mutation p.H946Y 0.08 tolerated(0.25) benign(0.424) TCGA-XF-A9T2-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.33 deleterious(0) probably_damaging(0.986) TCGA-XF-A9T2-01 3 41266182 41266182 C T CTNNB1 Missense_Mutation p.S60F 0.58 deleterious(0.03) benign(0.058) TCGA-XF-A9T2-01 3 62388770 62388770 T C CADPS Missense_Mutation p.I1290V 0.41 tolerated(0.44) benign(0.031) TCGA-XF-A9T2-01 4 153247253 153247253 C T FBXW7 Missense_Mutation p.G517R 0.42 deleterious(0) probably_damaging(1) TCGA-XF-A9T2-01 4 187078818 187078818 C T FAM149A Missense_Mutation p.S225F 0.39 deleterious(0.02) possibly_damaging(0.863) TCGA-XF-A9T2-01 4 57829586 57829586 A T NOA1 3'UTR 0.11 TCGA-XF-A9T2-01 5 111570403 111570403 G T EPB41L4A Silent p.R339R 0.47 TCGA-XF-A9T2-01 5 121413681 121413681 C A LOX 5'UTR 0.46 TCGA-XF-A9T2-01 5 135693045 135693045 G A TRPC7 Nonsense_Mutation p.Q11* 0.07 TCGA-XF-A9T2-01 5 168006300 168006300 G A PANK3 5'UTR 0.45 TCGA-XF-A9T2-01 5 176637515 176637516 - A NSD1 Frame_Shift_Ins p.N706Kfs*12 0.29 TCGA-XF-A9T2-01 5 176707734 176707734 T C NSD1 Missense_Mutation p.C1931R 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T2-01 5 177547210 177547210 C T N4BP3 Missense_Mutation p.T121M 0.41 deleterious(0) benign(0.139) TCGA-XF-A9T2-01 5 94839546 94839546 C T TTC37 Missense_Mutation p.M1063I 0.43 deleterious(0.02) benign(0.005) TCGA-XF-A9T2-01 6 112437186 112437186 G A LAMA4 Silent p.F1664F 0.47 TCGA-XF-A9T2-01 6 36946338 36946338 C T MTCH1 Silent p.L152L 0.42 TCGA-XF-A9T2-01 6 39846179 39846179 G A DAAM2 Splice_Site p.X454_splice 0.50 TCGA-XF-A9T2-01 6 41654867 41654867 C T TFEB Silent p.K256K 0.61 TCGA-XF-A9T2-01 6 52370505 52370505 C T TRAM2 Missense_Mutation p.R256H 0.40 deleterious(0) probably_damaging(0.976) TCGA-XF-A9T2-01 6 88299652 88299661 AGCGCGGCGA - RARS2 Frame_Shift_Del p.F5Lfs*10 0.29 TCGA-XF-A9T2-01 7 100192085 100192085 G C FBXO24 Silent p.L329L 0.37 TCGA-XF-A9T2-01 7 64438232 64438232 T C ZNF117 3'UTR 0.35 TCGA-XF-A9T2-01 7 97860326 97860326 G A TECPR1 Silent p.S743S 0.27 TCGA-XF-A9T2-01 7 99917345 99917345 C G SPDYE3 Missense_Mutation p.Q502E 0.46 deleterious(0.05) benign(0.335) TCGA-XF-A9T2-01 8 121644761 121644761 C G SNTB1 Missense_Mutation p.E307Q 0.57 deleterious(0.02) benign(0.441) TCGA-XF-A9T2-01 8 130760903 130760903 C G GSDMC Missense_Mutation p.Q457H 0.36 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T2-01 8 144641505 144641506 - AT GSDMD 5'UTR p.M1? 0.30 TCGA-XF-A9T2-01 8 33246682 33246682 G A FUT10 Silent p.I337I 0.49 TCGA-XF-A9T2-01 8 92972432 92972432 G A RUNX1T1 3'UTR 0.44 TCGA-XF-A9T2-01 9 107367856 107367856 G A OR13C2 Missense_Mutation p.S18F 0.34 deleterious(0) benign(0.189) TCGA-XF-A9T2-01 9 131219507 131219507 G T ODF2 5'UTR 0.33 TCGA-XF-A9T2-01 9 134382862 134382862 C G POMT1 Missense_Mutation p.H130D 0.43 deleterious(0.01) possibly_damaging(0.901) TCGA-XF-A9T2-01 9 21367553 21367553 G C IFNA13 Missense_Mutation p.L153V 0.32 tolerated(0.81) benign(0.006) TCGA-XF-A9T2-01 9 39177479 39177479 T A CNTNAP3 Missense_Mutation p.T255S 0.12 tolerated(1) benign(0.06) TCGA-XF-A9T2-01 9 5908788 5908788 C T MLANA 3'UTR 0.33 TCGA-XF-A9T2-01 X 118374412 118374412 G A PGRMC1 Missense_Mutation p.E157K 0.80 deleterious(0) benign(0.306) TCGA-XF-A9T2-01 X 123197011 123197011 C T STAG2 Nonsense_Mutation p.Q593* 0.77 TCGA-XF-A9T2-01 X 2825237 2825237 G C ARSD 3'UTR 0.90 TCGA-XF-A9T2-01 X 41206631 41206632 - T DDX3X Frame_Shift_Ins p.S614Qfs*17 0.41 TCGA-XF-A9T3-01 10 104853781 104853781 C T NT5C2 Silent p.L312L 0.16 TCGA-XF-A9T3-01 10 120354619 120354619 G T PRLHR Silent p.A46A 0.27 TCGA-XF-A9T3-01 10 121668558 121668558 A G SEC23IP Silent p.E369E 0.19 TCGA-XF-A9T3-01 10 127520035 127520035 G A BCCIP Missense_Mutation p.C153Y 0.13 deleterious(0) probably_damaging(0.964) TCGA-XF-A9T3-01 10 134218285 134218285 C G PWWP2B Missense_Mutation p.P94R 0.29 deleterious(0.04) possibly_damaging(0.467) TCGA-XF-A9T3-01 10 134540329 134540329 A G INPP5A Missense_Mutation p.I218V 0.08 tolerated(0.35) benign(0.004) TCGA-XF-A9T3-01 10 21139390 21139390 T A NEBL Silent p.P350P 0.35 TCGA-XF-A9T3-01 10 26830576 26830576 T C APBB1IP Silent p.H370H 0.28 TCGA-XF-A9T3-01 10 33214834 33214834 C T ITGB1 Missense_Mutation p.G251S 0.31 tolerated(0.06) probably_damaging(1) TCGA-XF-A9T3-01 10 410401 410401 A C DIP2C Missense_Mutation p.M797R 0.40 deleterious(0) benign(0.391) TCGA-XF-A9T3-01 10 50824135 50824135 G T CHAT Intron 0.33 TCGA-XF-A9T3-01 10 5141558 5141558 A G AKR1C3 Missense_Mutation p.I163V 0.13 deleterious(0.01) possibly_damaging(0.882) TCGA-XF-A9T3-01 10 5238879 5238879 C G AKR1C4 Missense_Mutation p.P17A 0.31 deleterious(0) possibly_damaging(0.622) TCGA-XF-A9T3-01 10 70229858 70229858 C G DNA2 Missense_Mutation p.R132P 0.24 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 10 88854561 88854561 G A GLUD1 5'UTR 0.27 TCGA-XF-A9T3-01 10 96535280 96535280 G C CYP2C19 Missense_Mutation p.E155D 0.14 deleterious(0.01) benign(0.183) TCGA-XF-A9T3-01 11 100179184 100179184 G A CNTN5 Missense_Mutation p.R905K 0.22 tolerated(0.16) benign(0.057) TCGA-XF-A9T3-01 11 101833630 101833630 G C KIAA1377 Missense_Mutation p.E622Q 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-XF-A9T3-01 11 101834475 101834475 G A KIAA1377 Silent p.A903A 0.29 TCGA-XF-A9T3-01 11 103153799 103153799 C T DYNC2H1 Silent p.A3632A 0.32 TCGA-XF-A9T3-01 11 111154926 111154926 G C C11orf53 Missense_Mutation p.E45Q 0.13 tolerated(0.07) probably_damaging(0.977) TCGA-XF-A9T3-01 11 111637044 111637044 C T PPP2R1B Silent p.A14A 0.17 TCGA-XF-A9T3-01 11 111724209 111724209 C T ALG9 Splice_Site p.X93_splice 0.26 TCGA-XF-A9T3-01 11 112042740 112042740 A G TEX12 3'UTR 0.50 TCGA-XF-A9T3-01 11 114167256 114167256 C T NNMT 5'UTR 0.14 TCGA-XF-A9T3-01 11 118972285 118972285 G C DPAGT1 Silent p.T27T 0.12 TCGA-XF-A9T3-01 11 122742105 122742105 T C CRTAM Nonstop_Mutation p.*394Qext*8 0.20 TCGA-XF-A9T3-01 11 124294671 124294671 C A OR8B4 Missense_Mutation p.G33W 0.38 tolerated_low_confidence(0.1) possibly_damaging(0.908) TCGA-XF-A9T3-01 11 20948923 20948923 G T NELL1 Nonsense_Mutation p.G277* 0.35 TCGA-XF-A9T3-01 11 28232615 28232615 C T METTL15 Silent p.L93L 0.30 TCGA-XF-A9T3-01 11 294327 294327 C T ATHL1 Silent p.S623S 0.36 TCGA-XF-A9T3-01 11 55579107 55579107 C - OR5L1 Frame_Shift_Del p.H56Tfs*14 0.21 TCGA-XF-A9T3-01 11 63971066 63971066 A G STIP1 Missense_Mutation p.M511V 0.17 deleterious(0.01) possibly_damaging(0.57) TCGA-XF-A9T3-01 11 64700272 64700272 G A PPP2R5B Silent p.E384E 0.32 TCGA-XF-A9T3-01 11 65685245 65685245 G A C11orf68 Silent p.A189A 0.10 TCGA-XF-A9T3-01 11 66298390 66298390 A G BBS1 Missense_Mutation p.K500R 0.20 tolerated(0.14) benign(0.031) TCGA-XF-A9T3-01 11 66475748 66475748 G A SPTBN2 Missense_Mutation p.A405V 0.52 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T3-01 11 70279289 70279289 C G CTTN Missense_Mutation p.A413G 0.27 tolerated(0.31) benign(0.114) TCGA-XF-A9T3-01 11 73584433 73584433 G A COA4 5'UTR 0.10 TCGA-XF-A9T3-01 11 75298265 75298265 C T MAP6 Missense_Mutation p.D761N 0.15 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-XF-A9T3-01 11 82644182 82644182 A C C11orf82 Missense_Mutation p.N601T 0.13 deleterious(0.03) benign(0.367) TCGA-XF-A9T3-01 11 85711789 85711789 G A PICALM Missense_Mutation p.H351Y 0.26 deleterious(0.03) benign(0.071) TCGA-XF-A9T3-01 11 85714467 85714467 C G PICALM Missense_Mutation p.E279Q 0.15 deleterious(0) probably_damaging(0.912) TCGA-XF-A9T3-01 12 100452336 100452336 A G UHRF1BP1L Missense_Mutation p.S907P 0.38 deleterious(0.05) benign(0.003) TCGA-XF-A9T3-01 12 10562131 10562131 T C KLRC4 Missense_Mutation p.Q15R 0.37 deleterious(0.04) possibly_damaging(0.511) TCGA-XF-A9T3-01 12 10865866 10865866 C A YBX3 Missense_Mutation p.D173Y 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9T3-01 12 109927862 109927862 A G UBE3B Intron 0.50 TCGA-XF-A9T3-01 12 110344424 110344424 G A TCHP Missense_Mutation p.M168I 0.17 tolerated(0.17) benign(0.002) TCGA-XF-A9T3-01 12 110344425 110344425 C A TCHP Missense_Mutation p.Q169K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T3-01 12 117217069 117217081 AGACTTTGTTCTG - RNFT2 Frame_Shift_Del p.D267Sfs*34 0.47 TCGA-XF-A9T3-01 12 13224193 13224193 G T KIAA1467 Missense_Mutation p.D463Y 0.39 deleterious(0.05) benign(0.001) TCGA-XF-A9T3-01 12 132262637 132262637 C T SFSWAP Silent p.L724L 0.51 TCGA-XF-A9T3-01 12 44148388 44148388 A G PUS7L Missense_Mutation p.Y221H 0.38 deleterious(0) possibly_damaging(0.845) TCGA-XF-A9T3-01 12 50283285 50283285 G A FAIM2 Silent p.T210T 0.35 TCGA-XF-A9T3-01 12 50847395 50847395 C T LARP4 Silent p.V319V 0.44 TCGA-XF-A9T3-01 12 57398733 57398733 C T ZBTB39 5'UTR 0.36 TCGA-XF-A9T3-01 12 58160753 58160775 GGAGGCGCCCAACTCGGGCGCCC - CYP27B1 Frame_Shift_Del p.W17Sfs*308 0.20 TCGA-XF-A9T3-01 12 6715471 6715471 A C CHD4 Silent p.L23L 0.39 TCGA-XF-A9T3-01 12 71148261 71148261 T C PTPRR Intron 0.32 TCGA-XF-A9T3-01 12 72288486 72288486 T C TBC1D15 Silent p.Y243Y 0.39 TCGA-XF-A9T3-01 13 102250648 102250648 G A ITGBL1 Silent p.R338R 0.31 TCGA-XF-A9T3-01 13 20411691 20411691 A G ZMYM5 Silent p.D381D 0.33 TCGA-XF-A9T3-01 13 25283907 25283907 C T ATP12A Missense_Mutation p.R908W 0.29 deleterious(0.02) possibly_damaging(0.509) TCGA-XF-A9T3-01 13 25671318 25671318 G C PABPC3 Missense_Mutation p.E328Q 0.15 deleterious(0) possibly_damaging(0.846) TCGA-XF-A9T3-01 13 32906895 32906895 A G BRCA2 Missense_Mutation p.D427G 0.37 deleterious(0.04) benign(0.081) TCGA-XF-A9T3-01 13 49050875 49050875 T A RB1 Nonsense_Mutation p.C853* 0.26 TCGA-XF-A9T3-01 13 73336102 73336102 T G DIS3 Missense_Mutation p.L767F 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 13 73636410 73636410 C T KLF5 Nonsense_Mutation p.Q225* 0.18 TCGA-XF-A9T3-01 13 76141411 76141411 G T UCHL3 Missense_Mutation p.S130I 0.26 deleterious(0) benign(0.03) TCGA-XF-A9T3-01 13 76427352 76427352 C T LMO7 Nonsense_Mutation p.Q1264* 0.22 TCGA-XF-A9T3-01 13 79896509 79896509 T A RBM26 Missense_Mutation p.E943V 0.11 deleterious(0) unknown(0) TCGA-XF-A9T3-01 13 95715044 95715044 G C ABCC4 Missense_Mutation p.P1094A 0.29 tolerated(0.05) possibly_damaging(0.897) TCGA-XF-A9T3-01 13 96624901 96624901 G A UGGT2 Nonsense_Mutation p.Q373* 0.28 TCGA-XF-A9T3-01 14 100813090 100813090 G A WARS Silent p.D273D 0.24 TCGA-XF-A9T3-01 14 103596086 103596086 C T TNFAIP2 Silent p.I290I 0.29 TCGA-XF-A9T3-01 14 104570648 104570648 C T ASPG Missense_Mutation p.A254V 0.31 deleterious(0.04) benign(0.065) TCGA-XF-A9T3-01 14 105518334 105518334 A G GPR132 Missense_Mutation p.V47A 0.34 tolerated(0.55) benign(0.012) TCGA-XF-A9T3-01 14 22521259 22521259 T G TRAV21 Missense_Mutation p.L94V 0.29 deleterious(0.02) probably_damaging(0.946) TCGA-XF-A9T3-01 14 22631736 22631736 G C TRAV29DV5 Missense_Mutation p.D110H 0.35 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T3-01 14 24027994 24027994 A G THTPA Missense_Mutation p.N213S 0.29 tolerated(0.2) benign(0) TCGA-XF-A9T3-01 14 24610507 24610507 C T EMC9 Missense_Mutation p.E3K 0.26 tolerated(0.05) possibly_damaging(0.648) TCGA-XF-A9T3-01 14 24877271 24877271 A T NYNRIN Missense_Mutation p.N132I 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9T3-01 14 29237917 29237917 C G FOXG1 Missense_Mutation p.Q478E 0.30 deleterious_low_confidence(0) benign(0.217) TCGA-XF-A9T3-01 14 37969138 37969138 G A MIPOL1 Missense_Mutation p.E353K 0.21 tolerated(0.65) probably_damaging(0.932) TCGA-XF-A9T3-01 14 39722425 39722425 A G MIA2 Missense_Mutation p.N646S 0.24 tolerated_low_confidence(0.7) benign(0.001) TCGA-XF-A9T3-01 14 50788199 50788199 A C ATP5S Splice_Site p.X14_splice 0.17 TCGA-XF-A9T3-01 14 54894381 54894381 T C CNIH1 3'UTR 0.38 TCGA-XF-A9T3-01 14 57272227 57272227 G C OTX2 5'UTR 0.36 TCGA-XF-A9T3-01 14 61187078 61187078 C T SIX4 Missense_Mutation p.D317N 0.24 tolerated(0.06) probably_damaging(0.989) TCGA-XF-A9T3-01 14 69343933 69343933 T A ACTN1 Missense_Mutation p.M818L 0.24 tolerated(0.49) benign(0.023) TCGA-XF-A9T3-01 14 76548996 76548996 G A IFT43 Silent p.L140L 0.27 TCGA-XF-A9T3-01 14 78390881 78390881 G A ADCK1 Missense_Mutation p.V314I 0.14 tolerated(0.48) benign(0.051) TCGA-XF-A9T3-01 14 92091161 92091161 T C CATSPERB Intron 0.36 TCGA-XF-A9T3-01 14 92563113 92563113 C T ATXN3 Missense_Mutation p.E32K 0.20 deleterious(0.03) benign(0.024) TCGA-XF-A9T3-01 14 92920265 92920265 G A SLC24A4 Missense_Mutation p.G301D 0.09 tolerated(0.32) benign(0.017) TCGA-XF-A9T3-01 14 94004546 94004546 C A UNC79 Missense_Mutation p.A268D 0.27 deleterious(0.02) benign(0.316) TCGA-XF-A9T3-01 14 96800058 96800058 C T ATG2B Missense_Mutation p.E392K 0.26 tolerated(0.07) probably_damaging(0.952) TCGA-XF-A9T3-01 15 24923806 24923806 C T NPAP1 Missense_Mutation p.P931L 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-XF-A9T3-01 15 25213157 25213157 C T SNURF Silent p.F63F 0.14 TCGA-XF-A9T3-01 15 40590889 40590889 T C PLCB2 Missense_Mutation p.M291V 0.31 deleterious(0.01) possibly_damaging(0.688) TCGA-XF-A9T3-01 15 40627508 40627508 C T C15orf52 Missense_Mutation p.E486K 0.17 tolerated(0.1) benign(0.093) TCGA-XF-A9T3-01 15 40627509 40627509 T C C15orf52 Silent p.P485P 0.18 TCGA-XF-A9T3-01 15 40912936 40912936 T C CASC5 Silent p.T184T 0.16 TCGA-XF-A9T3-01 15 41276538 41276538 C G INO80 Missense_Mutation p.D1312H 0.21 deleterious(0.04) possibly_damaging(0.879) TCGA-XF-A9T3-01 15 42436766 42436766 G T PLA2G4F Silent p.S619S 0.16 TCGA-XF-A9T3-01 15 44109598 44109598 T C MFAP1 Missense_Mutation p.K43R 0.13 tolerated(0.09) benign(0.292) TCGA-XF-A9T3-01 15 44912496 44912496 T C SPG11 Missense_Mutation p.Y909C 0.15 tolerated(0.18) possibly_damaging(0.878) TCGA-XF-A9T3-01 15 45332609 45332609 A T SORD Missense_Mutation p.N24Y 0.24 deleterious(0.04) benign(0.022) TCGA-XF-A9T3-01 15 45387236 45387236 G A DUOX2 Silent p.D1431D 0.11 TCGA-XF-A9T3-01 15 52537548 52537548 G A MYO5C Intron 0.17 TCGA-XF-A9T3-01 15 57574709 57574709 C G TCF12 Missense_Mutation p.S682W 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9T3-01 15 59808884 59808884 T A FAM81A Missense_Mutation p.M276K 0.32 deleterious(0) benign(0.247) TCGA-XF-A9T3-01 15 63128155 63128155 C T TLN2 Silent p.H2419H 0.19 TCGA-XF-A9T3-01 15 68937665 68937665 G C CORO2B Missense_Mutation p.G61A 0.23 deleterious(0.01) possibly_damaging(0.527) TCGA-XF-A9T3-01 15 91312739 91312739 G T BLM Silent p.V826V 0.18 TCGA-XF-A9T3-01 15 91462983 91462983 T C MAN2A2 Missense_Mutation p.M1140T 0.30 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T3-01 16 1262102 1262102 G A CACNA1H Missense_Mutation p.E1575K 0.30 deleterious(0.01) possibly_damaging(0.524) TCGA-XF-A9T3-01 16 30664040 30664040 A T PRR14 Splice_Site p.X65_splice 0.27 TCGA-XF-A9T3-01 16 3070398 3070398 T C TNFRSF12A 5'UTR 0.19 TCGA-XF-A9T3-01 16 31153274 31153274 G C PRSS36 Missense_Mutation p.S510W 0.41 deleterious(0) probably_damaging(0.968) TCGA-XF-A9T3-01 16 31476378 31476378 A G ARMC5 Intron 0.46 TCGA-XF-A9T3-01 16 3254992 3254992 T C OR1F1 Missense_Mutation p.L249P 0.39 tolerated(0.18) benign(0.218) TCGA-XF-A9T3-01 16 3786703 3786703 T C CREBBP Missense_Mutation p.Y1503C 0.35 unknown(0) TCGA-XF-A9T3-01 16 4431764 4431764 G A VASN Missense_Mutation p.A296T 0.19 deleterious(0) probably_damaging(0.985) TCGA-XF-A9T3-01 16 50353110 50353110 T C BRD7 3'UTR 0.14 TCGA-XF-A9T3-01 16 5058527 5058527 C T SEC14L5 Silent p.L560L 0.31 TCGA-XF-A9T3-01 16 52480082 52480082 G A TOX3 Missense_Mutation p.P244S 0.38 deleterious(0.04) probably_damaging(0.996) TCGA-XF-A9T3-01 16 53526354 53526354 G A AKTIP Silent p.F283F 0.16 TCGA-XF-A9T3-01 16 55736234 55736234 G T SLC6A2 Intron 0.35 TCGA-XF-A9T3-01 16 58705052 58705052 G A SLC38A7 Silent p.V376V 0.40 TCGA-XF-A9T3-01 16 66839882 66839882 A G NAE1 Missense_Mutation p.C460R 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-XF-A9T3-01 16 66881028 66881028 C T CA7 Silent p.L46L 0.18 TCGA-XF-A9T3-01 16 67381340 67381340 A G LRRC36 Intron 0.29 TCGA-XF-A9T3-01 16 67580379 67580379 T C FAM65A 3'UTR 0.24 TCGA-XF-A9T3-01 16 68835597 68835597 G C CDH1 Missense_Mutation p.R63P 0.22 tolerated(0.15) benign(0.088) TCGA-XF-A9T3-01 16 69385535 69385535 C T TMED6 Missense_Mutation p.R41Q 0.27 tolerated(0.45) benign(0.006) TCGA-XF-A9T3-01 16 71697814 71697814 G A PHLPP2 Missense_Mutation p.T658I 0.38 deleterious(0.02) possibly_damaging(0.632) TCGA-XF-A9T3-01 16 74487115 74487115 T C GLG1 Missense_Mutation p.M1164V 0.29 tolerated(0.55) benign(0.005) TCGA-XF-A9T3-01 16 74514249 74514249 G A GLG1 Missense_Mutation p.R573C 0.29 deleterious(0) possibly_damaging(0.888) TCGA-XF-A9T3-01 16 75512818 75512818 G A CHST6 Silent p.I303I 0.27 TCGA-XF-A9T3-01 16 84494279 84494279 G A ATP2C2 Missense_Mutation p.D785N 0.10 deleterious(0.05) probably_damaging(1) TCGA-XF-A9T3-01 16 8996041 8996041 T C USP7 Missense_Mutation p.I649V 0.32 tolerated(0.51) benign(0.001) TCGA-XF-A9T3-01 16 89961457 89961457 G C TCF25 Missense_Mutation p.Q280H 0.36 tolerated(0.1) possibly_damaging(0.463) TCGA-XF-A9T3-01 16 9009144 9009144 C T USP7 Missense_Mutation p.D349N 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 17 18145297 18145297 G A LLGL1 Missense_Mutation p.D956N 0.14 tolerated(0.54) benign(0.002) TCGA-XF-A9T3-01 17 27438821 27438821 C T MYO18A Missense_Mutation p.A887T 0.27 tolerated(0.1) possibly_damaging(0.85) TCGA-XF-A9T3-01 17 28712133 28712133 G C CPD Missense_Mutation p.L291F 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 17 29528136 29528136 T C NF1 Missense_Mutation p.S382P 0.41 deleterious(0.01) probably_damaging(0.958) TCGA-XF-A9T3-01 17 38421195 38421195 G T WIPF2 Missense_Mutation p.R256L 0.11 tolerated(0.17) benign(0.019) TCGA-XF-A9T3-01 17 38546236 38546236 G A TOP2A Missense_Mutation p.S1483L 0.29 deleterious_low_confidence(0.03) benign(0.007) TCGA-XF-A9T3-01 17 39622399 39622399 C T KRT32 Silent p.R166R 0.22 TCGA-XF-A9T3-01 17 40762124 40762124 A T TUBG1 Splice_Site p.X17_splice 0.11 TCGA-XF-A9T3-01 17 41349105 41349105 A G NBR1 Missense_Mutation p.R670G 0.43 deleterious(0.03) possibly_damaging(0.77) TCGA-XF-A9T3-01 17 43585846 43585846 T C LRRC37A4P Intron 0.20 TCGA-XF-A9T3-01 17 48145609 48145609 A G ITGA3 Missense_Mutation p.S202G 0.10 deleterious(0.04) benign(0.024) TCGA-XF-A9T3-01 17 48456576 48456576 C T EME1 Silent p.D420D 0.56 TCGA-XF-A9T3-01 17 4881809 4881809 G A CAMTA2 Silent p.C608C 0.22 TCGA-XF-A9T3-01 17 49197844 49197844 C A SPAG9 Silent p.L58L 0.41 TCGA-XF-A9T3-01 17 5326096 5326096 A T RPAIN Missense_Mutation p.E87V 0.39 deleterious(0.01) benign(0.205) TCGA-XF-A9T3-01 17 59001827 59001827 G T BCAS3 Missense_Mutation p.E351D 0.29 tolerated(0.43) benign(0.01) TCGA-XF-A9T3-01 17 65919001 65919001 G A BPTF Missense_Mutation p.R1868Q 0.16 probably_damaging(0.987) TCGA-XF-A9T3-01 17 7578502 7578502 A G TP53 Missense_Mutation p.V143A 0.46 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 17 76554236 76554236 C G DNAH17 Missense_Mutation p.R711P 0.62 benign(0.243) TCGA-XF-A9T3-01 17 7918760 7918760 A G GUCY2D Missense_Mutation p.T962A 0.38 tolerated(0.23) benign(0.071) TCGA-XF-A9T3-01 17 80010254 80010254 T C GPS1 Silent p.S24S 0.29 TCGA-XF-A9T3-01 17 80730340 80730340 G C TBCD Missense_Mutation p.V199L 0.14 deleterious(0.02) benign(0.317) TCGA-XF-A9T3-01 17 9590195 9590195 G A USP43 Missense_Mutation p.R441H 0.20 tolerated(0.37) benign(0.015) TCGA-XF-A9T3-01 18 10548990 10548990 A T NAPG Missense_Mutation p.D231V 0.27 tolerated(0.13) benign(0.054) TCGA-XF-A9T3-01 18 12340387 12340387 G C AFG3L2 Missense_Mutation p.P598R 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 18 19231604 19231604 A G ABHD3 Missense_Mutation p.V393A 0.08 deleterious(0.01) possibly_damaging(0.806) TCGA-XF-A9T3-01 18 28986105 28986105 G T DSG4 Missense_Mutation p.V568L 0.20 deleterious(0.03) possibly_damaging(0.785) TCGA-XF-A9T3-01 18 30825274 30825274 G A CCDC178 Missense_Mutation p.H510Y 0.29 tolerated(0.12) probably_damaging(0.998) TCGA-XF-A9T3-01 18 30825275 30825275 G T CCDC178 Missense_Mutation p.F509L 0.29 deleterious(0.01) possibly_damaging(0.758) TCGA-XF-A9T3-01 18 32386199 32386199 A C DTNA Missense_Mutation p.I127L 0.15 tolerated(0.97) benign(0.002) TCGA-XF-A9T3-01 18 33846755 33846755 A G MOCOS Missense_Mutation p.Q818R 0.33 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T3-01 18 47581662 47581662 T C MYO5B Silent p.L38L 0.17 TCGA-XF-A9T3-01 18 47797837 47797837 A T MBD1 Intron 0.28 TCGA-XF-A9T3-01 18 48241511 48241511 C T MAPK4 Silent p.P203P 0.07 TCGA-XF-A9T3-01 18 48593483 48593483 T G SMAD4 Missense_Mutation p.Y412D 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-XF-A9T3-01 18 56205221 56205221 A T ALPK2 Missense_Mutation p.F733Y 0.30 tolerated(1) benign(0.418) TCGA-XF-A9T3-01 18 56348478 56348478 A T MALT1 Missense_Mutation p.M96L 0.14 tolerated(1) benign(0.001) TCGA-XF-A9T3-01 18 60242455 60242455 A T ZCCHC2 Silent p.S1047S 0.28 TCGA-XF-A9T3-01 18 61654326 61654326 T G SERPINB8 Silent p.V313V 0.12 TCGA-XF-A9T3-01 18 7888152 7888152 C A PTPRM Missense_Mutation p.A82D 0.22 deleterious(0) possibly_damaging(0.887) TCGA-XF-A9T3-01 19 10504057 10504057 C A CDC37 Missense_Mutation p.V263L 0.13 deleterious(0.01) probably_damaging(0.945) TCGA-XF-A9T3-01 19 12186356 12186356 T C ZNF844 Missense_Mutation p.Y141H 0.18 tolerated(0.12) possibly_damaging(0.86) TCGA-XF-A9T3-01 19 1257318 1257318 G A MIDN 3'UTR 0.40 TCGA-XF-A9T3-01 19 15228701 15228701 C A ILVBL Missense_Mutation p.A393S 0.15 tolerated(0.07) possibly_damaging(0.775) TCGA-XF-A9T3-01 19 15338269 15338269 G A EPHX3 Silent p.F354F 0.24 TCGA-XF-A9T3-01 19 18538730 18538730 G T SSBP4 Missense_Mutation p.A73S 0.10 deleterious(0) possibly_damaging(0.856) TCGA-XF-A9T3-01 19 18679354 18679354 C T KXD1 Silent p.G148G 0.33 TCGA-XF-A9T3-01 19 2213432 2213432 C T DOT1L Intron 0.56 TCGA-XF-A9T3-01 19 22941329 22941329 G A ZNF99 Missense_Mutation p.A461V 0.38 tolerated(0.14) possibly_damaging(0.55) TCGA-XF-A9T3-01 19 37734207 37734207 C T ZNF383 Nonsense_Mutation p.Q357* 0.39 TCGA-XF-A9T3-01 19 38057017 38057017 C G ZNF571 Missense_Mutation p.G105R 0.24 tolerated(0.32) benign(0.001) TCGA-XF-A9T3-01 19 3913785 3913785 T C ATCAY Missense_Mutation p.V299A 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T3-01 19 39224404 39224404 G C CAPN12 Missense_Mutation p.F632L 0.40 tolerated(0.07) probably_damaging(0.932) TCGA-XF-A9T3-01 19 40392067 40392067 G A FCGBP Silent p.F2773F 0.15 TCGA-XF-A9T3-01 19 40901511 40901511 C A PRX Silent p.G916G 0.34 TCGA-XF-A9T3-01 19 41384769 41384769 C G CYP2A7 Missense_Mutation p.G243R 0.27 tolerated(0.34) benign(0.239) TCGA-XF-A9T3-01 19 41765801 41765801 G A AXL Missense_Mutation p.G893S 0.13 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-XF-A9T3-01 19 42265344 42265344 C T CEACAM6 Silent p.S204S 0.33 TCGA-XF-A9T3-01 19 43420506 43420506 G C PSG6 Missense_Mutation p.I66M 0.22 tolerated(0.24) benign(0.063) TCGA-XF-A9T3-01 19 44156405 44156405 A G PLAUR Silent p.N242N 0.23 TCGA-XF-A9T3-01 19 44981364 44981364 G A ZNF180 Missense_Mutation p.S445L 0.46 deleterious(0) probably_damaging(0.943) TCGA-XF-A9T3-01 19 45867687 45867687 T C ERCC2 Missense_Mutation p.N238S 0.33 deleterious(0) probably_damaging(0.979) TCGA-XF-A9T3-01 19 46303791 46303791 C T RSPH6A Missense_Mutation p.R610H 0.23 tolerated(0.06) benign(0.117) TCGA-XF-A9T3-01 19 48511945 48511945 C T ELSPBP1 Silent p.Y7Y 0.50 TCGA-XF-A9T3-01 19 49090670 49090670 G A SULT2B1 Silent p.K133K 0.13 TCGA-XF-A9T3-01 19 50209352 50209352 C G CPT1C Missense_Mutation p.A384G 0.39 deleterious(0.01) possibly_damaging(0.672) TCGA-XF-A9T3-01 19 50315885 50315885 T C FUZ Missense_Mutation p.S74G 0.48 deleterious(0.02) benign(0.068) TCGA-XF-A9T3-01 19 50979735 50979735 G A FAM71E1 5'UTR 0.26 TCGA-XF-A9T3-01 19 51532540 51532540 G A KLK12 Intron 0.42 TCGA-XF-A9T3-01 19 52034181 52034181 C A SIGLEC6 Missense_Mutation p.G154W 0.11 deleterious(0) benign(0.226) TCGA-XF-A9T3-01 19 52887495 52887495 T C ZNF880 Missense_Mutation p.F221S 0.57 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T3-01 19 54942066 54942066 C T TTYH1 Nonsense_Mutation p.Q339* 0.50 TCGA-XF-A9T3-01 19 55085829 55085829 T A LILRA2 Silent p.P44P 0.42 TCGA-XF-A9T3-01 19 55494780 55494780 A T NLRP2 Missense_Mutation p.T572S 0.57 deleterious(0.02) probably_damaging(0.95) TCGA-XF-A9T3-01 19 56300694 56300694 A C NLRP11 Missense_Mutation p.L862R 0.21 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T3-01 19 56466477 56466477 C T NLRP8 Silent p.L351L 0.26 TCGA-XF-A9T3-01 19 57931275 57931275 A G AC003002.6 Missense_Mutation p.S151G 0.12 tolerated(0.2) benign(0.012) TCGA-XF-A9T3-01 19 57955225 57955225 T C ZNF749 Missense_Mutation p.S237P 0.10 deleterious(0.01) possibly_damaging(0.665) TCGA-XF-A9T3-01 19 8381483 8381483 A G NDUFA7 Missense_Mutation p.S50P 0.16 deleterious(0.01) benign(0.016) TCGA-XF-A9T3-01 19 8807773 8807773 C T ACTL9 3'UTR 0.31 TCGA-XF-A9T3-01 19 9061380 9061380 G C MUC16 Missense_Mutation p.T8689R 0.20 unknown(0) TCGA-XF-A9T3-01 19 9074148 9074148 C A MUC16 Missense_Mutation p.S4433I 0.20 unknown(0) TCGA-XF-A9T3-01 1 100387277 100387277 A G AGL 3'UTR 0.13 TCGA-XF-A9T3-01 1 10190617 10190617 G T UBE4B Silent p.L585L 0.34 TCGA-XF-A9T3-01 1 104112841 104112841 T C AMY2B Intron 0.32 TCGA-XF-A9T3-01 1 111060579 111060579 G A KCNA10 Silent p.T277T 0.38 TCGA-XF-A9T3-01 1 112309372 112309372 T C DDX20 Missense_Mutation p.Y776H 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T3-01 1 118499701 118499701 G C WDR3 Missense_Mutation p.E822Q 0.19 deleterious(0.03) possibly_damaging(0.87) TCGA-XF-A9T3-01 1 12446339 12446339 C T VPS13D Silent p.H3860H 0.24 TCGA-XF-A9T3-01 1 145440399 145440399 A G TXNIP Silent p.S235S 0.33 TCGA-XF-A9T3-01 1 147230587 147230587 A T GJA5 Missense_Mutation p.S254T 0.19 tolerated(0.33) benign(0.006) TCGA-XF-A9T3-01 1 150321667 150321667 A C PRPF3 Missense_Mutation p.K626N 0.33 tolerated(0.08) benign(0.06) TCGA-XF-A9T3-01 1 152060567 152060567 T C TCHHL1 Missense_Mutation p.Y18C 0.37 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 1 152083771 152083771 T C TCHH Missense_Mutation p.E641G 0.23 unknown(0) TCGA-XF-A9T3-01 1 153660128 153660128 C T NPR1 Missense_Mutation p.P704L 0.16 deleterious(0.03) probably_damaging(1) TCGA-XF-A9T3-01 1 154306994 154306994 T A ATP8B2 Missense_Mutation p.L288Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T3-01 1 155294986 155294986 G T RUSC1 Intron 0.13 TCGA-XF-A9T3-01 1 155922566 155922566 C A ARHGEF2 Missense_Mutation p.G613W 0.12 deleterious(0.02) possibly_damaging(0.716) TCGA-XF-A9T3-01 1 156038131 156038131 G T RAB25 Nonsense_Mutation p.E104* 0.17 TCGA-XF-A9T3-01 1 156955941 156955941 T C ARHGEF11 Silent p.G19G 0.25 TCGA-XF-A9T3-01 1 15812408 15812408 T C CELA2B Missense_Mutation p.L169P 0.28 deleterious(0.02) benign(0.012) TCGA-XF-A9T3-01 1 158597508 158597508 C A SPTA1 Missense_Mutation p.L1857F 0.14 deleterious(0.02) benign(0.074) TCGA-XF-A9T3-01 1 160136383 160136383 G A ATP1A4 Silent p.A371A 0.27 TCGA-XF-A9T3-01 1 160466020 160466020 T A SLAMF6 Missense_Mutation p.K71N 0.38 tolerated(0.34) benign(0.431) TCGA-XF-A9T3-01 1 16380202 16380202 T G CLCNKB Missense_Mutation p.L564R 0.15 deleterious(0.05) benign(0.416) TCGA-XF-A9T3-01 1 177936929 177936929 C A SEC16B Missense_Mutation p.R63M 0.43 deleterious(0.01) possibly_damaging(0.885) TCGA-XF-A9T3-01 1 179399620 179399620 A G AXDND1 Missense_Mutation p.T456A 0.13 deleterious(0.03) possibly_damaging(0.636) TCGA-XF-A9T3-01 1 185984480 185984480 G A HMCN1 Missense_Mutation p.R1607Q 0.33 probably_damaging(0.995) TCGA-XF-A9T3-01 1 197063311 197063311 C A ASPM Splice_Site p.X2996_splice 0.08 TCGA-XF-A9T3-01 1 197070253 197070253 T C ASPM Missense_Mutation p.T2710A 0.18 tolerated(1) benign(0.001) TCGA-XF-A9T3-01 1 204159626 204159626 C G KISS1 Missense_Mutation p.A135P 0.31 deleterious(0.02) probably_damaging(0.977) TCGA-XF-A9T3-01 1 204216508 204216508 G C PLEKHA6 Silent p.L635L 0.25 TCGA-XF-A9T3-01 1 206224503 206224503 T C AVPR1B Silent p.N21N 0.34 TCGA-XF-A9T3-01 1 206711530 206711530 C T RASSF5 Missense_Mutation p.R163C 0.15 deleterious(0) possibly_damaging(0.861) TCGA-XF-A9T3-01 1 208216442 208216442 C T PLXNA2 Silent p.P1327P 0.35 TCGA-XF-A9T3-01 1 21268292 21268292 T A EIF4G3 Missense_Mutation p.E402V 0.11 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-XF-A9T3-01 1 22408260 22408260 T C CDC42 Missense_Mutation p.Y51H 0.29 tolerated(0.1) benign(0.238) TCGA-XF-A9T3-01 1 228528870 228528870 C T OBSCN Silent p.L6881L 0.21 TCGA-XF-A9T3-01 1 231061312 231061312 C G TTC13 Silent p.L513L 0.26 TCGA-XF-A9T3-01 1 236306309 236306309 C G GPR137B Silent p.L129L 0.12 TCGA-XF-A9T3-01 1 237054602 237054602 A T MTR Silent p.I1059I 0.18 TCGA-XF-A9T3-01 1 240656503 240656503 G A GREM2 Silent p.T91T 0.22 TCGA-XF-A9T3-01 1 2411650 2411650 G A PLCH2 Missense_Mutation p.D155N 0.23 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T3-01 1 24134631 24134631 G T HMGCL Silent p.A248A 0.16 TCGA-XF-A9T3-01 1 243419457 243419457 C G SDCCAG8 5'UTR 0.11 TCGA-XF-A9T3-01 1 244587308 244587308 C A ADSS Silent p.R176R 0.15 TCGA-XF-A9T3-01 1 248129034 248129034 C G OR2AK2 Missense_Mutation p.S134C 0.32 deleterious(0) probably_damaging(0.977) TCGA-XF-A9T3-01 1 248756426 248756426 G T OR2T10 Nonsense_Mutation p.S215* 0.14 TCGA-XF-A9T3-01 1 25569143 25569143 T C C1orf63 Silent p.A270A 0.10 TCGA-XF-A9T3-01 1 28059151 28059151 G A FAM76A Missense_Mutation p.V96M 0.19 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T3-01 1 35223178 35223178 C A GJB5 Missense_Mutation p.L83M 0.22 tolerated(0.4) probably_damaging(0.999) TCGA-XF-A9T3-01 1 46511644 46511644 C G PIK3R3 Missense_Mutation p.G378A 0.33 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 1 46650472 46650472 A G TSPAN1 Missense_Mutation p.T119A 0.12 tolerated(0.58) benign(0.026) TCGA-XF-A9T3-01 1 46744497 46744497 C T LRRC41 3'UTR 0.14 TCGA-XF-A9T3-01 1 51050454 51050454 A G FAF1 Silent p.D290D 0.20 TCGA-XF-A9T3-01 1 51439743 51439743 G A CDKN2C Missense_Mutation p.G103E 0.22 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 1 52520785 52520785 G A TXNDC12 5'UTR 0.43 TCGA-XF-A9T3-01 1 52530525 52530525 T C BTF3L4 Missense_Mutation p.V28A 0.18 tolerated(0.11) benign(0.178) TCGA-XF-A9T3-01 1 58971754 58971754 T C OMA1 Missense_Mutation p.Y448C 0.35 tolerated(0.06) benign(0.003) TCGA-XF-A9T3-01 1 59844509 59844509 G T FGGY Missense_Mutation p.R185L 0.26 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 1 6181183 6181183 G C CHD5 Missense_Mutation p.P1632A 0.25 tolerated_low_confidence(0.15) benign(0.003) TCGA-XF-A9T3-01 1 6609684 6609684 T C NOL9 Missense_Mutation p.T231A 0.15 tolerated(0.57) benign(0.001) TCGA-XF-A9T3-01 1 75038092 75038092 T A C1orf173 Missense_Mutation p.E1101V 0.16 deleterious(0) possibly_damaging(0.836) TCGA-XF-A9T3-01 1 82409446 82409446 T C LPHN2 Silent p.P397P 0.15 TCGA-XF-A9T3-01 1 82433870 82433870 A G LPHN2 Missense_Mutation p.H820R 0.11 deleterious(0.04) benign(0.009) TCGA-XF-A9T3-01 1 90399551 90399551 T C LRRC8D Silent p.Y308Y 0.21 TCGA-XF-A9T3-01 1 90463714 90463714 G C ZNF326 Splice_Site p.X21_splice 0.09 TCGA-XF-A9T3-01 1 95294101 95294101 A G SLC44A3 Silent p.P156P 0.20 TCGA-XF-A9T3-01 20 30193172 30193172 C T ID1 5'UTR 0.31 TCGA-XF-A9T3-01 20 30496506 30496506 G A TTLL9 Splice_Site p.X106_splice 0.20 TCGA-XF-A9T3-01 20 32332915 32332915 A T ZNF341 Missense_Mutation p.E50V 0.39 deleterious(0) probably_damaging(0.947) TCGA-XF-A9T3-01 20 33148712 33148712 C T PIGU Silent p.L422L 0.11 TCGA-XF-A9T3-01 20 36937449 36937449 A G BPI Silent p.Q125Q 0.23 TCGA-XF-A9T3-01 20 3734740 3734740 C G C20orf27 Missense_Mutation p.D189H 0.21 deleterious(0.05) probably_damaging(0.994) TCGA-XF-A9T3-01 20 44005882 44005882 C A TP53TG5 Missense_Mutation p.S75I 0.20 deleterious(0.02) possibly_damaging(0.573) TCGA-XF-A9T3-01 20 44037139 44037139 G A DBNDD2 Missense_Mutation p.R113H 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9T3-01 20 44567648 44567648 G A PCIF1 Missense_Mutation p.E4K 0.15 deleterious_low_confidence(0.01) benign(0.214) TCGA-XF-A9T3-01 20 55026884 55026884 G A CASS4 Missense_Mutation p.V218I 0.30 tolerated(0.23) benign(0.012) TCGA-XF-A9T3-01 20 5556513 5556513 T A GPCPD1 Missense_Mutation p.T273S 0.19 tolerated(0.24) benign(0.014) TCGA-XF-A9T3-01 20 61525162 61525162 G A DIDO1 Missense_Mutation p.P986L 0.24 benign(0.002) TCGA-XF-A9T3-01 20 62700768 62700768 T G TCEA2 Missense_Mutation p.F128L 0.36 tolerated(0.31) probably_damaging(0.998) TCGA-XF-A9T3-01 20 62701683 62701683 G C TCEA2 Silent p.L196L 0.21 TCGA-XF-A9T3-01 20 7864120 7864120 A G HAO1 3'UTR 0.33 TCGA-XF-A9T3-01 21 15746066 15746066 C G HSPA13 Missense_Mutation p.V430L 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-XF-A9T3-01 21 32119393 32119393 T C KRTAP21-2 Missense_Mutation p.Y43C 0.25 tolerated_low_confidence(0.14) unknown(0) TCGA-XF-A9T3-01 21 43171267 43171267 C T RIPK4 Missense_Mutation p.D205N 0.23 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T3-01 21 47783683 47783683 A G PCNT Missense_Mutation p.T815A 0.11 benign(0.176) TCGA-XF-A9T3-01 22 18220843 18220843 G T BID Missense_Mutation p.H218Q 0.19 tolerated(0.42) benign(0.005) TCGA-XF-A9T3-01 22 19175583 19175583 C A CLTCL1 Silent p.V1448V 0.32 TCGA-XF-A9T3-01 22 23135485 23135485 A G IGLV2-11 Missense_Mutation p.Y116C 0.34 tolerated_low_confidence(0.18) benign(0.305) TCGA-XF-A9T3-01 22 24567720 24567720 G C CABIN1 Missense_Mutation p.D1933H 0.31 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-XF-A9T3-01 22 25291229 25291229 C T SGSM1 Silent p.L720L 0.44 TCGA-XF-A9T3-01 22 35812629 35812629 A T MCM5 Splice_Site p.X472_splice 0.21 TCGA-XF-A9T3-01 22 39928410 39928410 C T RPS19BP1 Silent p.K57K 0.24 TCGA-XF-A9T3-01 22 43570530 43570530 T G TTLL12 Missense_Mutation p.N337H 0.55 tolerated(0.54) benign(0.001) TCGA-XF-A9T3-01 22 45928984 45928984 G A FBLN1 Missense_Mutation p.E196K 0.50 tolerated(0.49) benign(0.009) TCGA-XF-A9T3-01 22 50750629 50750629 T A DENND6B Missense_Mutation p.Y566F 0.50 tolerated(0.13) benign(0.001) TCGA-XF-A9T3-01 2 110342883 110342883 C A SEPT10 Missense_Mutation p.G78V 0.26 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 2 113820167 113820167 C T IL36RN Silent p.A127A 0.13 TCGA-XF-A9T3-01 2 128087555 128087555 T C MAP3K2 Silent p.L136L 0.08 TCGA-XF-A9T3-01 2 136575098 136575098 T C LCT Missense_Mutation p.H507R 0.12 tolerated(0.34) benign(0.002) TCGA-XF-A9T3-01 2 152512506 152512506 T A NEB Missense_Mutation p.Y2176F 0.31 benign(0.085) TCGA-XF-A9T3-01 2 162813747 162813747 G A SLC4A10 Silent p.L930L 0.30 TCGA-XF-A9T3-01 2 166019292 166019292 A G SCN3A Silent p.L247L 0.16 TCGA-XF-A9T3-01 2 166859220 166859220 T C SCN1A Missense_Mutation p.N1349S 0.26 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T3-01 2 168994608 168994608 G C STK39 Missense_Mutation p.P322A 0.12 deleterious(0.01) possibly_damaging(0.882) TCGA-XF-A9T3-01 2 170518892 170518892 A G CCDC173 Silent p.D239D 0.30 TCGA-XF-A9T3-01 2 172965628 172965628 C T DLX2 Missense_Mutation p.M210I 0.45 tolerated(0.38) benign(0.024) TCGA-XF-A9T3-01 2 174131126 174131126 G T MLTK Missense_Mutation p.G684V 0.39 deleterious_low_confidence(0) benign(0.093) TCGA-XF-A9T3-01 2 179584827 179584827 C G TTN Missense_Mutation p.D7848H 0.21 TCGA-XF-A9T3-01 2 183387050 183387050 A G PDE1A Silent p.Y18Y 0.23 TCGA-XF-A9T3-01 2 190426706 190426706 A T SLC40A1 Nonsense_Mutation p.Y538* 0.31 TCGA-XF-A9T3-01 2 190927242 190927242 A G MSTN Silent p.S27S 0.34 TCGA-XF-A9T3-01 2 192711255 192711255 C G SDPR Missense_Mutation p.D133H 0.08 deleterious(0) possibly_damaging(0.86) TCGA-XF-A9T3-01 2 202151181 202151181 G C CASP8 Splice_Site p.X494_splice 0.24 TCGA-XF-A9T3-01 2 202899695 202899695 G A FZD7 Missense_Mutation p.V109M 0.32 deleterious(0.02) possibly_damaging(0.547) TCGA-XF-A9T3-01 2 206605263 206605263 T C NRP2 Silent p.D389D 0.27 TCGA-XF-A9T3-01 2 215593707 215593707 T C BARD1 Missense_Mutation p.Y676C 0.58 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T3-01 2 225639730 225639730 C T DOCK10 Missense_Mutation p.E1969K 0.52 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T3-01 2 230650504 230650504 C A TRIP12 Missense_Mutation p.R1613L 0.34 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T3-01 2 234178697 234178697 C T ATG16L1 Missense_Mutation p.P231S 0.12 deleterious(0) possibly_damaging(0.827) TCGA-XF-A9T3-01 2 24290534 24290534 C A SF3B14 3'UTR 0.28 TCGA-XF-A9T3-01 2 27278055 27278055 G A AGBL5 Missense_Mutation p.R281H 0.22 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 2 28616605 28616605 C T FOSL2 Silent p.P6P 0.44 TCGA-XF-A9T3-01 2 29016737 29016737 A G PPP1CB Silent p.E251E 0.23 TCGA-XF-A9T3-01 2 32832544 32832544 T G BIRC6 Missense_Mutation p.L4698R 0.21 probably_damaging(0.998) TCGA-XF-A9T3-01 2 58468439 58468439 T A FANCL Missense_Mutation p.T4S 0.42 tolerated_low_confidence(0.37) benign(0.017) TCGA-XF-A9T3-01 2 63092086 63092086 T A EHBP1 Silent p.T361T 0.24 TCGA-XF-A9T3-01 2 74666805 74666805 A G RTKN Intron 0.33 TCGA-XF-A9T3-01 2 74751326 74751326 A G DQX1 Silent p.D180D 0.19 TCGA-XF-A9T3-01 2 74760940 74760940 T C LOXL3 Intron 0.35 TCGA-XF-A9T3-01 2 75109301 75109301 A T HK2 Nonsense_Mutation p.K592* 0.13 TCGA-XF-A9T3-01 2 85554470 85554470 C A TGOLN2 Nonsense_Mutation p.E129* 0.17 TCGA-XF-A9T3-01 2 89384818 89384818 A G IGKV3-15 Missense_Mutation p.L67P 0.44 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T3-01 3 101484441 101484441 A G CEP97 3'UTR 0.23 TCGA-XF-A9T3-01 3 105252536 105252536 T A ALCAM Splice_Site p.X183_splice 0.36 TCGA-XF-A9T3-01 3 111927113 111927113 A T SLC9C1 Missense_Mutation p.I633K 0.16 deleterious(0) possibly_damaging(0.536) TCGA-XF-A9T3-01 3 112989720 112989720 A T BOC Missense_Mutation p.K199M 0.15 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T3-01 3 121228938 121228938 C T POLQ Nonsense_Mutation p.W588* 0.12 TCGA-XF-A9T3-01 3 121825300 121825300 T C CD86 Missense_Mutation p.I219T 0.32 deleterious(0) benign(0.102) TCGA-XF-A9T3-01 3 125648398 125648398 T A ALG1L Missense_Mutation p.N121Y 0.15 deleterious(0.03) benign(0.016) TCGA-XF-A9T3-01 3 129150241 129150241 C A MBD4 3'UTR 0.33 TCGA-XF-A9T3-01 3 131101986 131101986 C T NUDT16 3'UTR 0.28 TCGA-XF-A9T3-01 3 141163027 141163027 A C ZBTB38 Silent p.A599A 0.38 TCGA-XF-A9T3-01 3 147113654 147113654 T C ZIC4 Missense_Mutation p.K275E 0.33 deleterious(0) possibly_damaging(0.784) TCGA-XF-A9T3-01 3 155571499 155571499 T C SLC33A1 Silent p.P96P 0.17 TCGA-XF-A9T3-01 3 173998673 173998673 A G NLGN1 Silent p.A684A 0.38 TCGA-XF-A9T3-01 3 179143996 179143996 A T GNB4 5'UTR 0.29 TCGA-XF-A9T3-01 3 184043653 184043653 C T EIF4G1 Missense_Mutation p.L1053F 0.32 tolerated(0.13) benign(0.333) TCGA-XF-A9T3-01 3 186335009 186335009 A G AHSG Missense_Mutation p.D148G 0.37 tolerated(0.07) benign(0.017) TCGA-XF-A9T3-01 3 194062822 194062822 C A CPN2 Missense_Mutation p.A204S 0.16 tolerated(0.73) benign(0.093) TCGA-XF-A9T3-01 3 194159647 194159647 T C ATP13A3 Missense_Mutation p.T589A 0.18 tolerated(0.2) benign(0.081) TCGA-XF-A9T3-01 3 195794479 195794479 T C TFRC Missense_Mutation p.N317S 0.18 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T3-01 3 25665051 25665051 C A TOP2B Silent p.V889V 0.26 TCGA-XF-A9T3-01 3 25820123 25820123 G T NGLY1 Missense_Mutation p.T63N 0.18 tolerated(0.29) benign(0.035) TCGA-XF-A9T3-01 3 46620610 46620610 A C TDGF1 Missense_Mutation p.K21Q 0.34 tolerated(0.45) benign(0.11) TCGA-XF-A9T3-01 3 48698320 48698320 T C CELSR3 Missense_Mutation p.N583S 0.31 tolerated(1) possibly_damaging(0.842) TCGA-XF-A9T3-01 3 49765535 49765535 C T IP6K1 Splice_Site p.X264_splice 0.10 TCGA-XF-A9T3-01 3 49940149 49940149 G A MST1R Silent p.L298L 0.15 TCGA-XF-A9T3-01 3 50005918 50005918 C T RBM6 Missense_Mutation p.P354S 0.13 tolerated(0.51) benign(0.001) TCGA-XF-A9T3-01 3 50036917 50036917 G A RBM6 Missense_Mutation p.D510N 0.26 deleterious(0) possibly_damaging(0.676) TCGA-XF-A9T3-01 3 52238888 52238888 T G ALAS1 Missense_Mutation p.Y253D 0.43 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 3 53215527 53215527 C T PRKCD Silent p.I148I 0.24 TCGA-XF-A9T3-01 3 77651495 77651495 T C ROBO2 Missense_Mutation p.Y1013H 0.30 deleterious(0) benign(0.403) TCGA-XF-A9T3-01 3 95374220 95374220 T C MTHFD2P1 RNA 0.14 TCGA-XF-A9T3-01 3 9859372 9859372 A T TTLL3 Missense_Mutation p.E263V 0.14 deleterious(0.01) possibly_damaging(0.511) TCGA-XF-A9T3-01 4 108817118 108817118 A G SGMS2 Missense_Mutation p.I137V 0.36 tolerated(0.41) benign(0) TCGA-XF-A9T3-01 4 111542403 111542403 T C PITX2 Missense_Mutation p.T110A 0.17 deleterious(0.02) benign(0.413) TCGA-XF-A9T3-01 4 113107967 113107967 A G C4orf32 Missense_Mutation p.Y91C 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T3-01 4 114823308 114823308 G A ARSJ 3'UTR 0.18 TCGA-XF-A9T3-01 4 1222104 1222104 T C CTBP1 Missense_Mutation p.M75V 0.34 tolerated(0.19) benign(0.033) TCGA-XF-A9T3-01 4 123109109 123109109 T C KIAA1109 Silent p.D229D 0.30 TCGA-XF-A9T3-01 4 123868631 123868631 T C SPATA5 Missense_Mutation p.C568R 0.19 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 4 1244618 1244618 G A CTBP1 5'Flank 0.32 TCGA-XF-A9T3-01 4 126239056 126239056 T C FAT4 Missense_Mutation p.I497T 0.19 benign(0.217) TCGA-XF-A9T3-01 4 1388190 1388190 C T CRIPAK 5'UTR 0.57 TCGA-XF-A9T3-01 4 151773618 151773618 T C LRBA Missense_Mutation p.I1082V 0.22 tolerated_low_confidence(0.62) benign(0) TCGA-XF-A9T3-01 4 156721097 156721097 C T GUCY1B3 Missense_Mutation p.T349M 0.11 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T3-01 4 157892047 157892047 G A PDGFC Silent p.L3L 0.39 TCGA-XF-A9T3-01 4 165878395 165878395 T C FAM218A Missense_Mutation p.L74P 0.24 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-XF-A9T3-01 4 166408670 166408670 G C CPE Missense_Mutation p.E352Q 0.37 tolerated(0.05) benign(0.422) TCGA-XF-A9T3-01 4 169342991 169343007 TTTTGCCTGAGGACGTT - DDX60L Frame_Shift_Del p.T767Lfs*37 0.31 TCGA-XF-A9T3-01 4 183836102 183836102 T G DCTD Missense_Mutation p.N84T 0.32 tolerated(0.16) benign(0.005) TCGA-XF-A9T3-01 4 2062800 2062800 A G NAT8L Missense_Mutation p.Y151C 0.20 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T3-01 4 23891567 23891567 A T PPARGC1A Missense_Mutation p.M5K 0.24 tolerated_low_confidence(0.28) benign(0.038) TCGA-XF-A9T3-01 4 25260800 25260800 A G PI4K2B Missense_Mutation p.I300V 0.29 deleterious(0.03) possibly_damaging(0.728) TCGA-XF-A9T3-01 4 25393963 25393963 G C ANAPC4 Missense_Mutation p.E237Q 0.25 deleterious(0.03) benign(0.422) TCGA-XF-A9T3-01 4 25783923 25783923 A G SEL1L3 Missense_Mutation p.Y800H 0.30 tolerated(0.13) possibly_damaging(0.737) TCGA-XF-A9T3-01 4 3344706 3344706 C T RGS12 Nonsense_Mutation p.Q642* 0.38 TCGA-XF-A9T3-01 4 36122816 36122816 A G ARAP2 Silent p.Y1293Y 0.29 TCGA-XF-A9T3-01 4 47765546 47765546 A T CORIN Missense_Mutation p.L156Q 0.20 tolerated(0.09) possibly_damaging(0.629) TCGA-XF-A9T3-01 4 55956123 55956123 A G KDR Silent p.D1064D 0.32 TCGA-XF-A9T3-01 4 5812138 5812138 A G EVC Missense_Mutation p.E952G 0.29 tolerated(0.1) benign(0.002) TCGA-XF-A9T3-01 4 6826270 6826270 G A KIAA0232 Missense_Mutation p.M30I 0.30 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T3-01 4 70799954 70799954 C A CSN1S1 Missense_Mutation p.R26S 0.17 tolerated(0.5) benign(0) TCGA-XF-A9T3-01 4 71640936 71640936 G A RUFY3 Silent p.L270L 0.19 TCGA-XF-A9T3-01 4 80828573 80828573 T C ANTXR2 3'UTR 0.08 TCGA-XF-A9T3-01 4 85611800 85611800 T C WDFY3 Silent p.E3074E 0.24 TCGA-XF-A9T3-01 4 89036193 89036193 A G ABCG2 Missense_Mutation p.Y287H 0.29 tolerated(0.91) benign(0.001) TCGA-XF-A9T3-01 4 954954 954954 C T DGKQ Silent p.R870R 0.63 TCGA-XF-A9T3-01 5 132232119 132232119 C G AFF4 Missense_Mutation p.E735Q 0.33 tolerated(0.54) benign(0.016) TCGA-XF-A9T3-01 5 13758996 13758996 C T DNAH5 Missense_Mutation p.V3460M 0.33 possibly_damaging(0.867) TCGA-XF-A9T3-01 5 140346831 140346831 G A PCDHAC2 Silent p.S160S 0.35 TCGA-XF-A9T3-01 5 150512104 150512104 C T ANXA6 Silent p.G223G 0.29 TCGA-XF-A9T3-01 5 150924130 150924130 G C FAT2 Silent p.L2186L 0.38 TCGA-XF-A9T3-01 5 150924174 150924174 G A FAT2 Nonsense_Mutation p.Q2172* 0.31 TCGA-XF-A9T3-01 5 150925519 150925519 G C FAT2 Missense_Mutation p.I1723M 0.35 possibly_damaging(0.756) TCGA-XF-A9T3-01 5 159343881 159343881 C T ADRA1B 5'UTR 0.47 TCGA-XF-A9T3-01 5 174868816 174868816 G A DRD1 Silent p.D429D 0.15 TCGA-XF-A9T3-01 5 21842333 21842333 C T CDH12 Missense_Mutation p.G251R 0.06 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T3-01 5 23527594 23527594 A C PRDM9 Silent p.T799T 0.30 TCGA-XF-A9T3-01 5 34033491 34033491 C T C1QTNF3 Missense_Mutation p.G163D 0.06 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 5 34998775 34998775 A G AGXT2 3'UTR 0.43 TCGA-XF-A9T3-01 5 35646888 35646888 G A SPEF2 Missense_Mutation p.M235I 0.10 tolerated(0.06) benign(0.032) TCGA-XF-A9T3-01 5 83362286 83362286 C G EDIL3 Missense_Mutation p.G264A 0.30 tolerated(0.15) benign(0.135) TCGA-XF-A9T3-01 6 12294605 12294605 A T EDN1 Missense_Mutation p.R167S 0.38 deleterious(0) possibly_damaging(0.849) TCGA-XF-A9T3-01 6 136742914 136742914 C T MAP7 Missense_Mutation p.D53N 0.33 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-XF-A9T3-01 6 143800283 143800283 G C PEX3 Missense_Mutation p.E297Q 0.44 tolerated(0.09) benign(0.135) TCGA-XF-A9T3-01 6 144844193 144844193 A T UTRN Silent p.A1925A 0.36 TCGA-XF-A9T3-01 6 155451320 155451320 A G TIAM2 Silent p.E321E 0.45 TCGA-XF-A9T3-01 6 27782265 27782280 TGGAGGTGACGCGGGA - HIST1H2AJ Frame_Shift_Del p.I80Sfs*? 0.19 TCGA-XF-A9T3-01 6 35949913 35949913 T G SLC26A8 Missense_Mutation p.D337A 0.29 deleterious(0.04) possibly_damaging(0.507) TCGA-XF-A9T3-01 6 42237328 42237328 T C TRERF1 Translation_Start_Site p.M1? 0.63 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-XF-A9T3-01 6 42986228 42986228 A G KLHDC3 Missense_Mutation p.T223A 0.57 tolerated(0.06) benign(0.007) TCGA-XF-A9T3-01 6 43604272 43604272 A C MAD2L1BP Missense_Mutation p.E99D 0.34 tolerated(0.34) benign(0.057) TCGA-XF-A9T3-01 6 44278753 44278753 G A AARS2 Silent p.L243L 0.24 TCGA-XF-A9T3-01 6 56497762 56497762 T C DST Missense_Mutation p.E695G 0.29 probably_damaging(0.918) TCGA-XF-A9T3-01 6 56716356 56716356 T C RP11-472M19.2 Intron 0.22 TCGA-XF-A9T3-01 6 75812331 75812331 G A COL12A1 Silent p.L2799L 0.50 TCGA-XF-A9T3-01 6 84055990 84055990 C A ME1 Missense_Mutation p.G168C 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T3-01 6 96034649 96034649 G A MANEA Missense_Mutation p.G112R 0.35 tolerated(0.05) probably_damaging(1) TCGA-XF-A9T3-01 7 100473270 100473272 GCA - SRRT In_Frame_Del p.S21del 0.25 TCGA-XF-A9T3-01 7 102584804 102584804 A G LRRC17 Missense_Mutation p.H359R 0.13 deleterious(0.01) possibly_damaging(0.625) TCGA-XF-A9T3-01 7 106545841 106545841 G T PIK3CG 3'UTR 0.35 TCGA-XF-A9T3-01 7 121741723 121741723 G C AASS Missense_Mutation p.D430E 0.13 tolerated(0.11) benign(0.124) TCGA-XF-A9T3-01 7 123599813 123599813 C G SPAM1 Silent p.T440T 0.32 TCGA-XF-A9T3-01 7 124404582 124404582 T C GPR37 Missense_Mutation p.E150G 0.21 deleterious_low_confidence(0.04) benign(0.003) TCGA-XF-A9T3-01 7 127965871 127965871 C T RBM28 Silent p.E401E 0.11 TCGA-XF-A9T3-01 7 130008339 130008339 T C CPA5 Silent p.Y404Y 0.16 TCGA-XF-A9T3-01 7 134552526 134552526 G C CALD1 Missense_Mutation p.K14N 0.20 deleterious(0) unknown(0) TCGA-XF-A9T3-01 7 138279277 138279277 C T SVOPL 3'Flank 0.80 TCGA-XF-A9T3-01 7 142569514 142569514 A T TRPV6 Silent p.R708R 0.09 TCGA-XF-A9T3-01 7 143792940 143792940 T C OR2A12 Missense_Mutation p.V247A 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-XF-A9T3-01 7 14724925 14724925 G A DGKB Silent p.C258C 0.44 TCGA-XF-A9T3-01 7 150671929 150671929 C T KCNH2 Silent p.V59V 0.20 TCGA-XF-A9T3-01 7 155604883 155604883 G C SHH 5'UTR 0.42 TCGA-XF-A9T3-01 7 20418897 20418897 C T ITGB8 Silent p.P204P 0.24 TCGA-XF-A9T3-01 7 20444282 20444282 A G ITGB8 Silent p.Q573Q 0.26 TCGA-XF-A9T3-01 7 21939629 21939629 G T DNAH11 Missense_Mutation p.E4405D 0.34 benign(0.018) TCGA-XF-A9T3-01 7 23731032 23731032 A G FAM221A Missense_Mutation p.S152G 0.31 deleterious(0) possibly_damaging(0.891) TCGA-XF-A9T3-01 7 36336720 36336720 C T EEPD1 Silent p.I478I 0.39 TCGA-XF-A9T3-01 7 38356729 38356729 C T TRGV9 Silent p.P85P 0.34 TCGA-XF-A9T3-01 7 43906362 43906362 T A MRPS24 Missense_Mutation p.Y147F 0.17 tolerated(0.23) benign(0.019) TCGA-XF-A9T3-01 7 43918486 43918486 G A URGCP Silent p.L192L 0.27 TCGA-XF-A9T3-01 7 44714125 44714125 G A OGDH Missense_Mutation p.V302M 0.29 deleterious(0) possibly_damaging(0.839) TCGA-XF-A9T3-01 7 5338649 5338649 G T SLC29A4 Nonsense_Mutation p.E305* 0.21 TCGA-XF-A9T3-01 7 66410116 66410116 G A TMEM248 Missense_Mutation p.E105K 0.30 deleterious(0.01) benign(0.398) TCGA-XF-A9T3-01 7 66458277 66458277 G A SBDS Missense_Mutation p.T129I 0.15 deleterious(0.04) possibly_damaging(0.565) TCGA-XF-A9T3-01 7 77549629 77549629 A T PHTF2 Silent p.S236S 0.25 TCGA-XF-A9T3-01 7 82585243 82585243 T A PCLO Missense_Mutation p.I1676L 0.20 unknown(0) TCGA-XF-A9T3-01 7 87399901 87399901 G A RUNDC3B Missense_Mutation p.D229N 0.19 tolerated(0.1) benign(0.217) TCGA-XF-A9T3-01 7 899856 899856 C T SUN1 Missense_Mutation p.S539L 0.23 deleterious(0) benign(0.264) TCGA-XF-A9T3-01 7 92855761 92855761 C T HEPACAM2 5'UTR 0.23 TCGA-XF-A9T3-01 7 98503868 98503868 G A TRRAP Missense_Mutation p.E369K 0.11 benign(0.006) TCGA-XF-A9T3-01 8 104390402 104390402 G T CTHRC1 Missense_Mutation p.A174S 0.28 tolerated(0.34) benign(0.002) TCGA-XF-A9T3-01 8 104442886 104442886 A G DCAF13 Missense_Mutation p.Y376C 0.31 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T3-01 8 105463582 105463582 C T DPYS Silent p.Q105Q 0.19 TCGA-XF-A9T3-01 8 110587814 110587814 C T SYBU Missense_Mutation p.S438N 0.29 tolerated(0.28) benign(0.062) TCGA-XF-A9T3-01 8 124693470 124693470 C G ANXA13 3'UTR 0.28 TCGA-XF-A9T3-01 8 125076611 125076611 A C FER1L6 Missense_Mutation p.T1118P 0.24 tolerated(0.29) benign(0) TCGA-XF-A9T3-01 8 144995667 144995667 G A PLEC Silent p.V2911V 0.19 TCGA-XF-A9T3-01 8 24771731 24771731 C T NEFM Missense_Mutation p.S142L 0.50 tolerated(0.07) unknown(0) TCGA-XF-A9T3-01 8 32505468 32505468 A G NRG1 Intron 0.23 TCGA-XF-A9T3-01 8 38386020 38386036 GTTTTAGTCTCTTGCTC - C8orf86 Frame_Shift_Del p.K42Qfs*11 0.28 TCGA-XF-A9T3-01 8 41504095 41504095 G C NKX6-3 Missense_Mutation p.S94W 0.56 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-XF-A9T3-01 8 59059449 59059461 TGCCCCTCCCCTG - FAM110B Frame_Shift_Del p.A221Lfs*12 0.21 TCGA-XF-A9T3-01 8 67796236 67796236 A T MCMDC2 Intron 0.31 TCGA-XF-A9T3-01 8 79510686 79510686 A G PKIA Missense_Mutation p.I23V 0.21 tolerated(0.37) benign(0.009) TCGA-XF-A9T3-01 8 86049847 86049847 T C LRRCC1 Silent p.I826I 0.31 TCGA-XF-A9T3-01 8 86127171 86127171 A C C8orf59 Silent p.L70L 0.12 TCGA-XF-A9T3-01 8 99101969 99101969 G A C8orf47 Missense_Mutation p.E242K 0.23 tolerated(0.16) benign(0.043) TCGA-XF-A9T3-01 9 100203987 100203987 T G TDRD7 Missense_Mutation p.S229A 0.44 tolerated(0.4) benign(0.107) TCGA-XF-A9T3-01 9 123374755 123374755 A C MEGF9 Missense_Mutation p.F336V 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T3-01 9 123953011 123953011 T G RAB14 Splice_Site p.X36_splice 0.23 TCGA-XF-A9T3-01 9 124103676 124103676 G T AL161784.1 Missense_Mutation p.A18S 0.43 possibly_damaging(0.578) TCGA-XF-A9T3-01 9 131071798 131071798 C T TRUB2 3'UTR 0.09 TCGA-XF-A9T3-01 9 139371521 139371521 C A SEC16A Missense_Mutation p.D183Y 0.08 deleterious(0) possibly_damaging(0.891) TCGA-XF-A9T3-01 9 139371529 139371529 G C SEC16A Missense_Mutation p.P180R 0.08 deleterious(0) possibly_damaging(0.483) TCGA-XF-A9T3-01 9 19371716 19371716 A G DENND4C Intron 0.34 TCGA-XF-A9T3-01 9 21334821 21334821 G A KLHL9 Missense_Mutation p.S13F 0.25 deleterious_low_confidence(0.01) benign(0.372) TCGA-XF-A9T3-01 9 27016985 27016985 A G IFT74 Silent p.Q290Q 0.28 TCGA-XF-A9T3-01 9 72840727 72840727 A C MAMDC2 Missense_Mutation p.K658T 0.13 tolerated(0.6) benign(0.199) TCGA-XF-A9T3-01 9 72897351 72897351 T C SMC5 Missense_Mutation p.V278A 0.27 tolerated(0.27) benign(0.058) TCGA-XF-A9T3-01 9 73235046 73235046 G T TRPM3 Missense_Mutation p.A680D 0.11 deleterious(0) probably_damaging(0.988) TCGA-XF-A9T3-01 9 82187697 82187697 T C TLE4 5'UTR 0.46 TCGA-XF-A9T3-01 9 86465051 86465051 G A KIF27 Silent p.H1173H 0.43 TCGA-XF-A9T3-01 9 90388527 90388527 G A CTSL3P RNA 0.41 TCGA-XF-A9T3-01 9 94171869 94171869 A T NFIL3 Missense_Mutation p.V383E 0.42 deleterious(0) probably_damaging(0.946) TCGA-XF-A9T3-01 9 94841845 94841845 C T SPTLC1 Intron 0.11 TCGA-XF-A9T3-01 9 95178993 95178993 A G OMD Missense_Mutation p.V283A 0.43 deleterious(0) benign(0.174) TCGA-XF-A9T3-01 9 97041091 97041091 G C ZNF169 5'UTR 0.32 TCGA-XF-A9T3-01 X 101408827 101408827 A T BEX5 3'UTR 0.33 TCGA-XF-A9T3-01 X 102508734 102508734 G A TCEAL8 Silent p.G58G 0.33 TCGA-XF-A9T3-01 X 103411545 103411545 C A FAM199X Missense_Mutation p.P27T 0.27 tolerated_low_confidence(0.17) benign(0.035) TCGA-XF-A9T3-01 X 105153032 105153032 G A NRK Missense_Mutation p.A468T 0.43 deleterious_low_confidence(0.02) benign(0.028) TCGA-XF-A9T3-01 X 106062002 106062002 T A TBC1D8B Nonsense_Mutation p.C80* 0.32 TCGA-XF-A9T3-01 X 106185963 106185963 C A MORC4 Nonsense_Mutation p.E720* 0.31 TCGA-XF-A9T3-01 X 107381402 107381402 T C ATG4A Silent p.Y265Y 0.25 TCGA-XF-A9T3-01 X 110391069 110391069 T A PAK3 Missense_Mutation p.D163E 0.35 tolerated(0.09) possibly_damaging(0.539) TCGA-XF-A9T3-01 X 111020173 111020173 T A TRPC5 Nonsense_Mutation p.R764* 0.14 TCGA-XF-A9T3-01 X 114251767 114251767 A G IL13RA2 Silent p.C22C 0.20 TCGA-XF-A9T3-01 X 117815188 117815188 T C DOCK11 Silent p.L1947L 0.18 TCGA-XF-A9T3-01 X 119048716 119048716 G A AKAP14 Missense_Mutation p.D106N 0.19 deleterious(0) probably_damaging(0.994) TCGA-XF-A9T3-01 X 123210198 123210198 T A STAG2 Missense_Mutation p.D850E 0.13 tolerated(0.27) probably_damaging(0.919) TCGA-XF-A9T3-01 X 123210199 123210199 G T STAG2 Nonsense_Mutation p.E851* 0.13 TCGA-XF-A9T3-01 X 134992292 134992292 A G SAGE1 Silent p.A609A 0.22 TCGA-XF-A9T3-01 X 138687884 138687884 A G MCF2 Silent p.Y591Y 0.23 TCGA-XF-A9T3-01 X 152713230 152713230 C T TREX2 5'UTR 0.35 TCGA-XF-A9T3-01 X 153047009 153047009 C T SRPK3 Silent p.H80H 0.42 TCGA-XF-A9T3-01 X 153186957 153186957 G C ARHGAP4 Missense_Mutation p.P99R 0.20 deleterious(0) probably_damaging(0.986) TCGA-XF-A9T3-01 X 153640430 153640430 G T TAZ Missense_Mutation p.M39I 0.44 deleterious(0.02) benign(0.01) TCGA-XF-A9T3-01 X 16857987 16857987 G A TXLNG Nonsense_Mutation p.W399* 0.28 TCGA-XF-A9T3-01 X 17771498 17771498 T C SCML1 Missense_Mutation p.C326R 0.24 tolerated(0.35) possibly_damaging(0.897) TCGA-XF-A9T3-01 X 20174206 20174228 TGACTGTATGGGGCTGCTCACCT - RPS6KA3 Splice_Site p.X700_splice 0.16 TCGA-XF-A9T3-01 X 2861179 2861179 C T ARSE Silent p.T351T 0.17 TCGA-XF-A9T3-01 X 3239952 3239952 G A MXRA5 Silent p.S1258S 0.28 TCGA-XF-A9T3-01 X 36162948 36162948 G C CHDC2 3'UTR 0.35 TCGA-XF-A9T3-01 X 48933237 48933237 A T WDR45 Missense_Mutation p.L232Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T3-01 X 50089793 50089793 G A CCNB3 Missense_Mutation p.R1266H 0.19 deleterious(0) probably_damaging(0.968) TCGA-XF-A9T3-01 X 54780385 54780385 G A ITIH6 Silent p.S1072S 0.50 TCGA-XF-A9T3-01 X 67430091 67430091 T C OPHN1 Missense_Mutation p.M246V 0.32 tolerated(1) benign(0.015) TCGA-XF-A9T3-01 X 70823546 70823546 A G ACRC Missense_Mutation p.D140G 0.32 unknown(0) TCGA-XF-A9T3-01 X 74289136 74289136 T C ABCB7 Missense_Mutation p.S508G 0.29 deleterious(0) probably_damaging(1) TCGA-XF-A9T3-01 X 79283516 79283516 C A TBX22 Missense_Mutation p.T297N 0.22 deleterious(0.01) benign(0.033) TCGA-XF-A9T4-01 10 26310672 26310672 A G MYO3A Intron 0.59 TCGA-XF-A9T4-01 10 48429497 48429497 G A GDF10 Missense_Mutation p.T130M 0.17 tolerated(0.06) benign(0.061) TCGA-XF-A9T4-01 11 19077768 19077768 C T MRGPRX2 Missense_Mutation p.R61K 0.71 tolerated(0.1) benign(0.371) TCGA-XF-A9T4-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.78 deleterious(0) possibly_damaging(0.476) TCGA-XF-A9T4-01 11 8496318 8496318 T A STK33 Silent p.T45T 0.37 TCGA-XF-A9T4-01 12 110385083 110385083 C G GIT2 Missense_Mutation p.R540T 0.37 tolerated(0.26) benign(0.003) TCGA-XF-A9T4-01 12 111652022 111652022 G A CUX2 Missense_Mutation p.A28T 0.29 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T4-01 12 113830675 113830675 G A SDS 3'UTR 0.38 TCGA-XF-A9T4-01 12 132428252 132428252 G A PUS1 3'UTR 0.44 TCGA-XF-A9T4-01 12 27825375 27825375 C T PPFIBP1 Silent p.I443I 0.33 TCGA-XF-A9T4-01 12 7531611 7531611 C T CD163L1 Silent p.A778A 0.34 TCGA-XF-A9T4-01 13 70371010 70371010 C A KLHL1 Missense_Mutation p.G500V 0.33 deleterious(0) probably_damaging(1) TCGA-XF-A9T4-01 16 31214015 31214015 T C C16orf98 Missense_Mutation p.S81P 0.38 unknown(0) TCGA-XF-A9T4-01 16 65016142 65016142 G A CDH11 Silent p.I354I 0.36 TCGA-XF-A9T4-01 16 67316524 67316524 C T PLEKHG4 Missense_Mutation p.R458W 0.46 tolerated(0.19) benign(0.164) TCGA-XF-A9T4-01 17 3680919 3680919 C A ITGAE Missense_Mutation p.A24S 0.20 tolerated(0.32) benign(0.028) TCGA-XF-A9T4-01 17 40461544 40461544 G A STAT5A Intron 0.39 TCGA-XF-A9T4-01 17 60040276 60040276 G C MED13 Missense_Mutation p.T1634R 0.06 deleterious(0.01) benign(0.246) TCGA-XF-A9T4-01 17 73000112 73000112 C T CDR2L Silent p.I447I 0.32 TCGA-XF-A9T4-01 17 8136307 8136307 A G CTC1 Missense_Mutation p.L621P 0.46 deleterious(0) probably_damaging(0.988) TCGA-XF-A9T4-01 18 56819839 56819839 G C SEC11C Missense_Mutation p.R90T 0.34 deleterious(0.03) benign(0.285) TCGA-XF-A9T4-01 19 1244149 1244149 G A ATP5D Missense_Mutation p.E117K 0.40 deleterious(0) probably_damaging(1) TCGA-XF-A9T4-01 19 52447758 52447758 G A ZNF613 Missense_Mutation p.E208K 0.34 deleterious(0.03) possibly_damaging(0.671) TCGA-XF-A9T4-01 1 111860424 111860424 C T CHIA Missense_Mutation p.S201L 0.35 deleterious(0.02) benign(0.255) TCGA-XF-A9T4-01 1 158450698 158450698 C T OR10R2 3'Flank 0.32 TCGA-XF-A9T4-01 1 246711851 246711851 C T TFB2M Missense_Mutation p.R285H 0.32 tolerated(0.6) benign(0.004) TCGA-XF-A9T4-01 1 35260203 35260203 T C GJA4 Missense_Mutation p.V130A 0.18 tolerated(0.84) benign(0.022) TCGA-XF-A9T4-01 1 40704531 40704531 C G RLF Missense_Mutation p.S1386C 0.46 tolerated(0.19) benign(0.243) TCGA-XF-A9T4-01 1 55538007 55538007 G A USP24 Nonsense_Mutation p.R2558* 0.17 TCGA-XF-A9T4-01 20 26084183 26084183 C T NCOR1P1 RNA 0.20 TCGA-XF-A9T4-01 22 24036559 24036559 C G RGL4 Missense_Mutation p.S313C 0.42 deleterious(0) probably_damaging(0.973) TCGA-XF-A9T4-01 2 170387987 170387987 G A FASTKD1 Silent p.I734I 0.25 TCGA-XF-A9T4-01 2 187528498 187528498 C T ITGAV Missense_Mutation p.H621Y 0.31 tolerated(0.26) probably_damaging(0.911) TCGA-XF-A9T4-01 2 216274346 216274346 C T FN1 Missense_Mutation p.V747M 0.33 deleterious(0) possibly_damaging(0.885) TCGA-XF-A9T4-01 3 119449127 119449127 G A MAATS1 Silent p.Q307Q 0.21 TCGA-XF-A9T4-01 4 121738036 121738036 G A PRDM5 Nonsense_Mutation p.R232* 0.34 TCGA-XF-A9T4-01 4 140291413 140291413 G A NAA15 Missense_Mutation p.R601K 0.31 tolerated(0.79) possibly_damaging(0.796) TCGA-XF-A9T4-01 4 155471491 155471491 G A PLRG1 5'UTR 0.43 TCGA-XF-A9T4-01 4 17609259 17609259 G C LAP3 3'UTR 0.41 TCGA-XF-A9T4-01 4 68514802 68514802 G T UBA6 Missense_Mutation p.S411Y 0.36 tolerated(1) probably_damaging(0.921) TCGA-XF-A9T4-01 4 95197489 95197489 G C SMARCAD1 Splice_Site p.X603_splice 0.36 TCGA-XF-A9T4-01 5 140502959 140502959 G A PCDHB4 Missense_Mutation p.R460H 0.39 tolerated_low_confidence(0.08) benign(0.099) TCGA-XF-A9T4-01 5 73136383 73136383 C G ARHGEF28 Missense_Mutation p.L409V 0.43 tolerated(0.11) benign(0.15) TCGA-XF-A9T4-01 6 152738145 152738145 G A SYNE1 Silent p.H1809H 0.25 TCGA-XF-A9T4-01 6 166831732 166831732 G A RPS6KA2 Missense_Mutation p.S648L 0.36 tolerated(0.22) benign(0.006) TCGA-XF-A9T4-01 6 53519742 53519742 C A KLHL31 Missense_Mutation p.R110M 0.29 tolerated(0.06) probably_damaging(0.935) TCGA-XF-A9T4-01 6 94066764 94066764 G A EPHA7 Missense_Mutation p.P332L 0.27 deleterious(0) possibly_damaging(0.905) TCGA-XF-A9T4-01 7 28857695 28857695 T G CREB5 Missense_Mutation p.V421G 0.05 deleterious(0) unknown(0) TCGA-XF-A9T4-01 7 98608704 98608704 G C TRRAP Missense_Mutation p.Q3642H 0.39 probably_damaging(0.997) TCGA-XF-A9T4-01 8 145152184 145152184 G A CYC1 Missense_Mutation p.R308Q 0.42 deleterious(0) possibly_damaging(0.683) TCGA-XF-A9T4-01 9 139324229 139324229 T C INPP5E Silent p.R611R 0.45 TCGA-XF-A9T4-01 X 48846041 48846041 T C GRIPAP1 Silent p.E284E 0.08 TCGA-XF-A9T5-01 10 101180427 101180427 G A GOT1 Missense_Mutation p.S85F 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-XF-A9T5-01 10 101996931 101996931 C G CWF19L1 Intron 0.19 TCGA-XF-A9T5-01 10 102265222 102265222 G C SEC31B Missense_Mutation p.L359V 0.10 deleterious(0.01) possibly_damaging(0.721) TCGA-XF-A9T5-01 10 102306329 102306329 C G HIF1AN Missense_Mutation p.F295L 0.43 deleterious(0.01) possibly_damaging(0.503) TCGA-XF-A9T5-01 10 103868035 103868035 C G LDB1 Missense_Mutation p.G351R 0.18 deleterious(0) possibly_damaging(0.749) TCGA-XF-A9T5-01 10 1046670 1046670 C T GTPBP4 Silent p.I236I 0.14 TCGA-XF-A9T5-01 10 105817941 105817941 C G COL17A1 Silent p.L410L 0.12 TCGA-XF-A9T5-01 10 105893477 105893477 C G WDR96 Missense_Mutation p.Q1499H 0.37 deleterious(0.01) possibly_damaging(0.837) TCGA-XF-A9T5-01 10 105926320 105926320 C G WDR96 Missense_Mutation p.D989H 0.47 tolerated(0.1) benign(0.047) TCGA-XF-A9T5-01 10 112724767 112724767 C T SHOC2 Silent p.L217L 0.28 TCGA-XF-A9T5-01 10 120914648 120914648 C G SFXN4 Missense_Mutation p.E220Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T5-01 10 120917560 120917560 C T SFXN4 Missense_Mutation p.M125I 0.32 tolerated(0.23) benign(0.05) TCGA-XF-A9T5-01 10 124800130 124800130 G A ACADSB Missense_Mutation p.R151K 0.16 tolerated(0.31) benign(0.001) TCGA-XF-A9T5-01 10 129907286 129907286 C G MKI67 Missense_Mutation p.E940Q 0.45 deleterious(0.01) probably_damaging(0.914) TCGA-XF-A9T5-01 10 134898367 134898367 G A GPR123 5'Flank 0.20 TCGA-XF-A9T5-01 10 135123369 135123369 G A ZNF511 Missense_Mutation p.G106E 0.24 tolerated(0.1) benign(0.008) TCGA-XF-A9T5-01 10 135163596 135163596 C G PRAP1 Intron 0.44 TCGA-XF-A9T5-01 10 15103770 15103770 C A OLAH Missense_Mutation p.L124I 0.20 deleterious(0.01) benign(0.117) TCGA-XF-A9T5-01 10 18931463 18931463 G A RP11-139J15.7 Missense_Mutation p.P73S 0.13 deleterious(0.05) possibly_damaging(0.728) TCGA-XF-A9T5-01 10 25284636 25284636 C G ENKUR Missense_Mutation p.R129T 0.18 deleterious(0.02) benign(0.15) TCGA-XF-A9T5-01 10 27400950 27400950 C G YME1L1 Missense_Mutation p.E760Q 0.17 deleterious(0.04) probably_damaging(0.955) TCGA-XF-A9T5-01 10 30987369 30987369 C T SVILP1 RNA 0.35 TCGA-XF-A9T5-01 10 34759174 34759174 G A PARD3 Nonsense_Mutation p.R141* 0.31 TCGA-XF-A9T5-01 10 35928750 35928750 G T FZD8 Missense_Mutation p.F536L 0.36 deleterious(0) probably_damaging(0.968) TCGA-XF-A9T5-01 10 48414021 48414021 C T GDF2 Missense_Mutation p.V283M 0.32 tolerated(0.29) benign(0.033) TCGA-XF-A9T5-01 10 49654555 49654555 G A ARHGAP22 Missense_Mutation p.S675F 0.24 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 10 5006011 5006011 C G AKR1C1 Intron 0.24 TCGA-XF-A9T5-01 10 54531267 54531267 G C MBL2 Missense_Mutation p.I43M 0.19 tolerated(0.13) benign(0.098) TCGA-XF-A9T5-01 10 5772585 5772585 G A FAM208B Missense_Mutation p.R208H 0.23 tolerated(1) benign(0) TCGA-XF-A9T5-01 10 70550975 70550975 G C CCAR1 Missense_Mutation p.K1135N 0.11 tolerated_low_confidence(0.44) unknown(0) TCGA-XF-A9T5-01 10 75013811 75013811 C A TTC18 Silent p.L1096L 0.30 TCGA-XF-A9T5-01 10 75520579 75520579 G A SEC24C Missense_Mutation p.R320H 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 10 75607805 75607805 G C CAMK2G Missense_Mutation p.P213A 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-XF-A9T5-01 10 79572015 79572015 G A DLG5 Silent p.I1382I 0.13 TCGA-XF-A9T5-01 10 81373599 81373599 C T SFTPA1 Silent p.G174G 0.26 TCGA-XF-A9T5-01 10 90427331 90427331 G C LIPF Missense_Mutation p.Q47H 0.39 deleterious(0) probably_damaging(0.961) TCGA-XF-A9T5-01 10 91174480 91174480 C T IFIT5 5'UTR 0.38 TCGA-XF-A9T5-01 10 93272072 93272072 G C HECTD2 Missense_Mutation p.K754N 0.39 deleterious(0.02) benign(0.145) TCGA-XF-A9T5-01 10 95241993 95241993 G T MYOF 5'Flank 0.37 TCGA-XF-A9T5-01 10 95557058 95557058 C A LGI1 Missense_Mutation p.P391H 0.28 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 10 98188405 98188405 G A TLL2 Silent p.F207F 0.17 TCGA-XF-A9T5-01 10 99343433 99343433 G A ANKRD2 Missense_Mutation p.G345E 0.58 tolerated_low_confidence(0.07) benign(0.11) TCGA-XF-A9T5-01 11 1016797 1016797 G C MUC6 Missense_Mutation p.Q2002E 0.02 possibly_damaging(0.666) TCGA-XF-A9T5-01 11 102482544 102482544 C G MMP20 Silent p.L155L 0.20 TCGA-XF-A9T5-01 11 108043804 108043804 G C NPAT Missense_Mutation p.S636C 0.17 deleterious(0.01) possibly_damaging(0.896) TCGA-XF-A9T5-01 11 108199772 108199772 G A ATM Missense_Mutation p.D2372N 0.24 tolerated(0.19) benign(0.008) TCGA-XF-A9T5-01 11 116701556 116701556 G C APOC3 Missense_Mutation p.K41N 0.35 deleterious(0.01) probably_damaging(0.966) TCGA-XF-A9T5-01 11 117266891 117266891 G - CEP164 Frame_Shift_Del p.G1071Efs*38 0.23 TCGA-XF-A9T5-01 11 119050518 119050518 G C NLRX1 Missense_Mutation p.Q596H 0.35 tolerated(0.08) probably_damaging(0.997) TCGA-XF-A9T5-01 11 119051889 119051889 C T NLRX1 Silent p.L759L 0.24 TCGA-XF-A9T5-01 11 119998272 119998272 G C TRIM29 Missense_Mutation p.F302L 0.28 tolerated(0.15) possibly_damaging(0.744) TCGA-XF-A9T5-01 11 121061418 121061418 C G TECTA Missense_Mutation p.S2124C 0.17 tolerated_low_confidence(0.16) benign(0.43) TCGA-XF-A9T5-01 11 121448045 121448045 C A SORL1 Silent p.R1172R 0.23 TCGA-XF-A9T5-01 11 122735385 122735385 G A CRTAM Missense_Mutation p.E259K 0.22 tolerated(0.46) benign(0.006) TCGA-XF-A9T5-01 11 122775111 122775111 C G C11orf63 Missense_Mutation p.Q275E 0.23 deleterious(0.01) probably_damaging(0.919) TCGA-XF-A9T5-01 11 123596797 123596797 T C ZNF202 Missense_Mutation p.K619E 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9T5-01 11 123778075 123778075 C G OR8D4 Missense_Mutation p.P313A 0.20 tolerated_low_confidence(0.67) benign(0.005) TCGA-XF-A9T5-01 11 130784385 130784385 C T SNX19 Missense_Mutation p.E484K 0.21 tolerated(0.5) benign(0.033) TCGA-XF-A9T5-01 11 132016398 132016398 C T NTM Silent p.L130L 0.21 TCGA-XF-A9T5-01 11 1587039 1587039 G A DUSP8 Silent p.L6L 0.17 TCGA-XF-A9T5-01 11 2428416 2428416 G A TRPM5 Silent p.L1017L 0.24 TCGA-XF-A9T5-01 11 44289058 44289058 C G ALX4 Missense_Mutation p.E298Q 0.30 deleterious(0.02) possibly_damaging(0.813) TCGA-XF-A9T5-01 11 45882443 45882443 G A CRY2 Missense_Mutation p.R192H 0.33 deleterious(0.05) benign(0.133) TCGA-XF-A9T5-01 11 46742353 46742353 G A F2 Silent p.A93A 0.16 TCGA-XF-A9T5-01 11 47073984 47073984 C T C11orf49 Silent p.F65F 0.21 TCGA-XF-A9T5-01 11 48328286 48328286 A T OR4S1 Missense_Mutation p.E171V 0.14 tolerated(1) benign(0.038) TCGA-XF-A9T5-01 11 57970739 57970739 C G OR1S2 Missense_Mutation p.L305F 0.18 deleterious(0.01) benign(0.267) TCGA-XF-A9T5-01 11 61729947 61729947 G C BEST1 Missense_Mutation p.D381H 0.13 deleterious(0.01) possibly_damaging(0.788) TCGA-XF-A9T5-01 11 65268118 65268118 G A MALAT1 RNA 0.10 TCGA-XF-A9T5-01 11 65561713 65561713 G A OVOL1 Silent p.K104K 0.16 TCGA-XF-A9T5-01 11 65829391 65829391 G A SF3B2 Silent p.L633L 0.50 TCGA-XF-A9T5-01 11 6637565 6637565 G A TPP1 Silent p.L352L 0.16 TCGA-XF-A9T5-01 11 6651299 6651299 C T DCHS1 Missense_Mutation p.E1576K 0.33 deleterious(0.01) possibly_damaging(0.544) TCGA-XF-A9T5-01 11 67190975 67190975 C T CARNS1 Missense_Mutation p.R586C 0.55 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T5-01 11 67821493 67821493 C G CHKA Missense_Mutation p.D446H 0.25 deleterious(0) possibly_damaging(0.779) TCGA-XF-A9T5-01 11 71712863 71712863 G A IL18BP Missense_Mutation p.E181K 0.44 tolerated(0.15) benign(0.006) TCGA-XF-A9T5-01 11 72005416 72005416 C A CLPB Nonsense_Mutation p.E575* 0.23 TCGA-XF-A9T5-01 11 72005477 72005477 C T CLPB Silent p.R554R 0.39 TCGA-XF-A9T5-01 11 75139529 75139529 C T KLHL35 Missense_Mutation p.E342K 0.18 deleterious(0) unknown(0) TCGA-XF-A9T5-01 11 7818013 7818013 G A OR5P2 Silent p.F159F 0.24 TCGA-XF-A9T5-01 11 799519 799519 C T PIDD Missense_Mutation p.E841K 0.23 tolerated(0.05) possibly_damaging(0.825) TCGA-XF-A9T5-01 12 100707206 100707206 C G SCYL2 Missense_Mutation p.R287G 0.08 tolerated(0.49) benign(0.039) TCGA-XF-A9T5-01 12 106633884 106633884 C T CKAP4 Missense_Mutation p.E243K 0.05 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T5-01 12 106633983 106633983 C A CKAP4 Nonsense_Mutation p.E210* 0.16 TCGA-XF-A9T5-01 12 107371817 107371817 C T MTERFD3 Missense_Mutation p.A226T 0.37 tolerated(0.27) benign(0.009) TCGA-XF-A9T5-01 12 108079670 108079670 G C PWP1 5'UTR 0.30 TCGA-XF-A9T5-01 12 108910742 108910742 G A FICD 5'UTR 0.31 TCGA-XF-A9T5-01 12 112622067 112622067 C T HECTD4 Missense_Mutation p.G3422D 0.16 benign(0.295) TCGA-XF-A9T5-01 12 113873356 113873356 C T SDSL Silent p.I222I 0.15 TCGA-XF-A9T5-01 12 117466055 117466055 C T FBXW8 3'UTR 0.30 TCGA-XF-A9T5-01 12 120636368 120636368 G A RPLP0 Missense_Mutation p.R214C 0.21 tolerated(0.16) benign(0.003) TCGA-XF-A9T5-01 12 120876023 120876023 G A AL021546.6 Missense_Mutation p.E9K 0.28 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-XF-A9T5-01 12 121434389 121434389 G A HNF1A Missense_Mutation p.A385T 0.16 tolerated(0.3) possibly_damaging(0.904) TCGA-XF-A9T5-01 12 122762736 122762736 G C CLIP1 Missense_Mutation p.Q1311E 0.12 tolerated(0.13) possibly_damaging(0.871) TCGA-XF-A9T5-01 12 122838999 122838999 C A CLIP1 Splice_Site p.X436_splice 0.16 TCGA-XF-A9T5-01 12 12315284 12315284 C G LRP6 Missense_Mutation p.E708Q 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-XF-A9T5-01 12 124496615 124496615 C G ZNF664 5'UTR 0.45 TCGA-XF-A9T5-01 12 131283145 131283145 C T STX2 Missense_Mutation p.M237I 0.08 tolerated(0.12) benign(0.1) TCGA-XF-A9T5-01 12 131593352 131593352 C T GPR133 Silent p.L657L 0.26 TCGA-XF-A9T5-01 12 132498319 132498319 C T EP400 Intron 0.18 TCGA-XF-A9T5-01 12 133733326 133733326 C T ZNF10 Silent p.F498F 0.24 TCGA-XF-A9T5-01 12 20766419 20766419 G A PDE3A Missense_Mutation p.E352K 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 12 21294542 21294542 G C SLCO1B1 Missense_Mutation p.E12Q 0.30 tolerated(0.15) possibly_damaging(0.494) TCGA-XF-A9T5-01 12 3432571 3432571 G C RP5-1063M23.2 RNA 0.33 TCGA-XF-A9T5-01 12 40714982 40714982 C T LRRK2 Missense_Mutation p.S1721L 0.26 tolerated(0.11) possibly_damaging(0.894) TCGA-XF-A9T5-01 12 40748110 40748110 G C LRRK2 Missense_Mutation p.D2196H 0.20 deleterious(0.01) possibly_damaging(0.743) TCGA-XF-A9T5-01 12 46316318 46316318 G C SCAF11 Missense_Mutation p.I1391M 0.38 deleterious(0.03) probably_damaging(0.945) TCGA-XF-A9T5-01 12 49312057 49312057 G C CCDC65 Splice_Site p.X204_splice 0.16 TCGA-XF-A9T5-01 12 49416091 49416091 C G KMT2D Missense_Mutation p.D5462H 0.18 unknown(0) TCGA-XF-A9T5-01 12 49420803 49420803 C T KMT2D Nonsense_Mutation p.W4982* 0.33 TCGA-XF-A9T5-01 12 49421015 49421015 C T KMT2D Missense_Mutation p.E4912K 0.36 unknown(0) TCGA-XF-A9T5-01 12 49522552 49522552 A G TUBA1B Missense_Mutation p.V182A 0.22 deleterious_low_confidence(0.01) benign(0.296) TCGA-XF-A9T5-01 12 49523412 49523412 C T TUBA1B Missense_Mutation p.D33N 0.25 tolerated_low_confidence(0.07) benign(0.011) TCGA-XF-A9T5-01 12 49959942 49959942 C T MCRS1 Missense_Mutation p.E36K 0.37 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-XF-A9T5-01 12 51685658 51685658 G C BIN2 Nonsense_Mutation p.S411* 0.14 TCGA-XF-A9T5-01 12 52200680 52200680 G C SCN8A Missense_Mutation p.E1804Q 0.28 tolerated(0.07) benign(0.005) TCGA-XF-A9T5-01 12 52941683 52941683 G A KRT71 Silent p.L354L 0.44 TCGA-XF-A9T5-01 12 56031260 56031260 G C OR10P1 Missense_Mutation p.R195S 0.46 tolerated(0.84) benign(0.014) TCGA-XF-A9T5-01 12 56705063 56705063 C T CNPY2 Missense_Mutation p.E114K 0.16 tolerated(0.32) benign(0.021) TCGA-XF-A9T5-01 12 57327857 57327857 C A SDR9C7 Missense_Mutation p.Q63H 0.49 deleterious(0.02) possibly_damaging(0.582) TCGA-XF-A9T5-01 12 57398368 57398368 C G ZBTB39 Missense_Mutation p.E112Q 0.37 tolerated(0.41) possibly_damaging(0.569) TCGA-XF-A9T5-01 12 57440369 57440369 G C MYO1A Missense_Mutation p.Q203E 0.12 deleterious(0) probably_damaging(0.988) TCGA-XF-A9T5-01 12 57604652 57604652 C G LRP1 Silent p.R4302R 0.17 TCGA-XF-A9T5-01 12 57630905 57630905 C A NDUFA4L2 5'UTR 0.18 TCGA-XF-A9T5-01 12 64020261 64020261 G A DPY19L2 Silent p.F283F 0.22 TCGA-XF-A9T5-01 12 6497640 6497640 G A LTBR Nonsense_Mutation p.W248* 0.17 TCGA-XF-A9T5-01 12 65856932 65856932 C T MSRB3 Intron 0.32 TCGA-XF-A9T5-01 12 69158705 69158705 G A SLC35E3 3'UTR 0.42 TCGA-XF-A9T5-01 12 69986862 69986862 G A CCT2 Missense_Mutation p.G286E 0.20 deleterious(0.03) benign(0.175) TCGA-XF-A9T5-01 12 7015087 7015087 C T LRRC23 Missense_Mutation p.H69Y 0.30 tolerated(0.16) possibly_damaging(0.638) TCGA-XF-A9T5-01 12 70954631 70954631 C T PTPRB Missense_Mutation p.D1418N 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-XF-A9T5-01 12 72004059 72004059 G C ZFC3H1 3'UTR 0.32 TCGA-XF-A9T5-01 12 72163588 72163588 C G RAB21 Missense_Mutation p.F56L 0.42 tolerated(0.06) benign(0.027) TCGA-XF-A9T5-01 12 7636068 7636068 C T CD163 Missense_Mutation p.E995K 0.17 deleterious(0.03) possibly_damaging(0.463) TCGA-XF-A9T5-01 12 81111228 81111228 G A MYF5 Missense_Mutation p.R129H 0.35 tolerated(0.05) benign(0.25) TCGA-XF-A9T5-01 12 8245322 8245322 C T NECAP1 Missense_Mutation p.A145V 0.33 tolerated(0.06) benign(0.063) TCGA-XF-A9T5-01 12 86268146 86268146 G A NTS 5'UTR 0.14 TCGA-XF-A9T5-01 12 89916872 89916872 G C GALNT4 Missense_Mutation p.F485L 0.20 tolerated(0.06) possibly_damaging(0.669) TCGA-XF-A9T5-01 12 977542 977542 G C WNK1 Intron 0.45 TCGA-XF-A9T5-01 12 98941688 98941688 G C TMPO 3'UTR 0.18 TCGA-XF-A9T5-01 13 101944409 101944409 C T NALCN Missense_Mutation p.E327K 0.23 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T5-01 13 103309469 103309469 G C TPP2 Missense_Mutation p.D1006H 0.19 deleterious(0.04) possibly_damaging(0.606) TCGA-XF-A9T5-01 13 113742891 113742891 G A MCF2L Missense_Mutation p.R928Q 0.22 tolerated(0.32) benign(0.192) TCGA-XF-A9T5-01 13 25480279 25480279 G C CENPJ Missense_Mutation p.H633D 0.14 tolerated(0.52) benign(0.005) TCGA-XF-A9T5-01 13 26104153 26104153 G A ATP8A2 Missense_Mutation p.V80M 0.28 tolerated(0.25) benign(0.039) TCGA-XF-A9T5-01 13 31543047 31543047 G A TEX26 Silent p.L224L 0.23 TCGA-XF-A9T5-01 13 33334710 33334710 C T PDS5B Intron 0.30 TCGA-XF-A9T5-01 13 33760083 33760083 C G STARD13 Intron 0.12 TCGA-XF-A9T5-01 13 38320151 38320151 C T TRPC4 Missense_Mutation p.D274N 0.24 tolerated(0.14) benign(0.238) TCGA-XF-A9T5-01 13 41654872 41654872 G A WBP4 Missense_Mutation p.E283K 0.17 tolerated(0.16) benign(0.05) TCGA-XF-A9T5-01 13 46065078 46065078 C G COG3 Missense_Mutation p.S318C 0.24 tolerated(0.18) possibly_damaging(0.717) TCGA-XF-A9T5-01 13 58299228 58299228 G T PCDH17 Missense_Mutation p.D1094Y 0.15 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-XF-A9T5-01 13 80911205 80911205 C T SPRY2 Silent p.V212V 0.19 TCGA-XF-A9T5-01 13 96505887 96505887 C G UGGT2 Missense_Mutation p.K1398N 0.19 deleterious(0) probably_damaging(0.958) TCGA-XF-A9T5-01 14 100317292 100317292 C G EML1 Nonsense_Mutation p.S57* 0.21 TCGA-XF-A9T5-01 14 101491412 101491412 C G MIR380 RNA 0.59 TCGA-XF-A9T5-01 14 102466467 102466467 G A DYNC1H1 Missense_Mutation p.E1316K 0.54 benign(0.266) TCGA-XF-A9T5-01 14 102829220 102829220 G A CINP 5'Flank 0.67 TCGA-XF-A9T5-01 14 104640129 104640129 C T KIF26A Missense_Mutation p.P652S 0.65 tolerated(0.47) benign(0.021) TCGA-XF-A9T5-01 14 104640130 104640130 C A KIF26A Missense_Mutation p.P652H 0.74 deleterious(0) benign(0.312) TCGA-XF-A9T5-01 14 105412770 105412770 C T AHNAK2 Silent p.P3006P 0.50 TCGA-XF-A9T5-01 14 105461075 105461075 C G C14orf79 Silent p.L319L 0.51 TCGA-XF-A9T5-01 14 20852559 20852559 G A TEP1 Silent p.L1110L 0.17 TCGA-XF-A9T5-01 14 20915655 20915655 C G OSGEP Missense_Mutation p.M298I 0.63 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T5-01 14 22090581 22090581 C T TRAV1-1 Missense_Mutation p.L63F 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-XF-A9T5-01 14 23745102 23745102 C G HOMEZ Missense_Mutation p.L445F 0.50 tolerated(0.44) benign(0.085) TCGA-XF-A9T5-01 14 23897789 23897789 C T MYH7 Missense_Mutation p.E500K 0.18 deleterious(0.01) possibly_damaging(0.883) TCGA-XF-A9T5-01 14 24706315 24706315 C T GMPR2 Silent p.L186L 0.23 TCGA-XF-A9T5-01 14 25101256 25101256 C T GZMB Silent p.V136V 0.65 TCGA-XF-A9T5-01 14 45675298 45675298 G C MIS18BP1 Missense_Mutation p.I1076M 0.64 deleterious(0.02) benign(0.367) TCGA-XF-A9T5-01 14 55819051 55819051 G T FBXO34 Missense_Mutation p.R648L 0.67 deleterious(0) probably_damaging(0.918) TCGA-XF-A9T5-01 14 59111980 59111980 C A DACT1 Silent p.L213L 0.50 TCGA-XF-A9T5-01 14 79175877 79175877 C T NRXN3 Silent p.L140L 0.28 TCGA-XF-A9T5-01 14 93119350 93119350 G A RIN3 Silent p.K652K 0.45 TCGA-XF-A9T5-01 14 94404144 94404144 G C ASB2 Missense_Mutation p.I557M 0.56 deleterious(0) probably_damaging(0.94) TCGA-XF-A9T5-01 14 96707622 96707622 C T BDKRB2 Silent p.F319F 0.58 TCGA-XF-A9T5-01 15 100996185 100996185 G A CERS3 Silent p.L304L 0.27 TCGA-XF-A9T5-01 15 25616717 25616717 C T UBE3A Missense_Mutation p.E205K 0.22 tolerated(0.37) benign(0.002) TCGA-XF-A9T5-01 15 31294558 31294558 C T TRPM1 Missense_Mutation p.E1466K 0.24 tolerated_low_confidence(0.06) benign(0.05) TCGA-XF-A9T5-01 15 40300367 40300367 G A EIF2AK4 Missense_Mutation p.E1183K 0.42 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 15 40756213 40756213 G A BAHD1 Missense_Mutation p.E657K 0.47 tolerated(1) possibly_damaging(0.826) TCGA-XF-A9T5-01 15 42116199 42116199 G T MAPKBP1 Nonsense_Mutation p.E1391* 0.37 TCGA-XF-A9T5-01 15 42117464 42117464 G A MAPKBP1 Missense_Mutation p.D1459N 0.43 tolerated(0.13) benign(0.007) TCGA-XF-A9T5-01 15 42503881 42503881 C G TMEM87A 3'UTR 0.43 TCGA-XF-A9T5-01 15 42503926 42503926 C TG TMEM87A Frame_Shift_Ins p.E550Qfs*15 0.30 TCGA-XF-A9T5-01 15 44175927 44175927 C T FRMD5 Missense_Mutation p.R370K 0.52 tolerated(0.13) benign(0.004) TCGA-XF-A9T5-01 15 45028906 45028906 G A TRIM69 Missense_Mutation p.E2K 0.25 tolerated_low_confidence(0.29) benign(0.002) TCGA-XF-A9T5-01 15 50773824 50773824 C T USP8 Silent p.L455L 0.41 TCGA-XF-A9T5-01 15 59500964 59500964 G A MYO1E Silent p.L482L 0.43 TCGA-XF-A9T5-01 15 64972544 64972544 G C ZNF609 Missense_Mutation p.K1310N 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T5-01 15 69561135 69561135 C T GLCE Missense_Mutation p.S469L 0.38 deleterious(0) benign(0.257) TCGA-XF-A9T5-01 15 75651746 75651746 T G MAN2C1 Missense_Mutation p.H661P 0.21 tolerated(0.28) benign(0.012) TCGA-XF-A9T5-01 15 77471280 77471280 G C PEAK1 Missense_Mutation p.Q997E 0.59 tolerated(0.71) benign(0.001) TCGA-XF-A9T5-01 15 77759617 77759617 G T HMG20A Nonsense_Mutation p.E140* 0.30 TCGA-XF-A9T5-01 15 81574986 81574986 G T IL16 Missense_Mutation p.G363V 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 15 83331513 83331513 G C AP3B2 Missense_Mutation p.I903M 0.89 tolerated(0.06) benign(0.308) TCGA-XF-A9T5-01 15 83935682 83935682 C T BNC1 Missense_Mutation p.R114Q 0.43 deleterious(0) probably_damaging(0.954) TCGA-XF-A9T5-01 15 89744322 89744322 G C ABHD2 3'UTR 0.23 TCGA-XF-A9T5-01 15 89760439 89760439 C T RLBP1 Silent p.E86E 0.41 TCGA-XF-A9T5-01 15 90903769 90903769 G A ZNF774 Missense_Mutation p.E236K 0.52 tolerated(0.89) benign(0.003) TCGA-XF-A9T5-01 16 15128227 15128227 C G PDXDC1 Missense_Mutation p.L633V 0.21 tolerated(0.08) benign(0.132) TCGA-XF-A9T5-01 16 15727550 15727550 C G KIAA0430 Missense_Mutation p.R386T 0.27 deleterious(0) possibly_damaging(0.598) TCGA-XF-A9T5-01 16 15829220 15829220 C T MYH11 Intron 0.19 TCGA-XF-A9T5-01 16 1822510 1822510 C G MRPS34 Missense_Mutation p.K123N 0.34 deleterious(0.03) benign(0.206) TCGA-XF-A9T5-01 16 1841441 1841441 G A IGFALS Silent p.I364I 0.38 TCGA-XF-A9T5-01 16 1841489 1841489 G C IGFALS Missense_Mutation p.F348L 0.31 deleterious(0.02) possibly_damaging(0.705) TCGA-XF-A9T5-01 16 23080758 23080758 G T USP31 Missense_Mutation p.H890N 0.38 tolerated_low_confidence(0.05) benign(0.4) TCGA-XF-A9T5-01 16 24958807 24958807 C T ARHGAP17 Missense_Mutation p.E413K 0.34 deleterious(0) probably_damaging(0.921) TCGA-XF-A9T5-01 16 29896949 29896949 C G SEZ6L2 Missense_Mutation p.E444Q 0.14 deleterious(0.01) benign(0.184) TCGA-XF-A9T5-01 16 30133206 30133206 C T MAPK3 Missense_Mutation p.E98K 0.45 deleterious(0) possibly_damaging(0.702) TCGA-XF-A9T5-01 16 30583543 30583543 C A ZNF688 5'UTR 0.36 TCGA-XF-A9T5-01 16 3063906 3063906 C G CLDN9 Silent p.L181L 0.32 TCGA-XF-A9T5-01 16 3077679 3077679 C T THOC6 3'UTR 0.16 TCGA-XF-A9T5-01 16 30778107 30778107 C T RNF40 Nonsense_Mutation p.Q447* 0.39 TCGA-XF-A9T5-01 16 3078210 3078210 G A CCDC64B Missense_Mutation p.S475F 0.24 deleterious(0.01) benign(0.319) TCGA-XF-A9T5-01 16 30937180 30937180 C T FBXL19 Silent p.F55F 0.27 TCGA-XF-A9T5-01 16 31155151 31155151 G A PRSS36 Missense_Mutation p.S243F 0.31 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 16 31309235 31309235 A T ITGAM Missense_Mutation p.H557L 0.36 deleterious(0.03) benign(0.119) TCGA-XF-A9T5-01 16 3170156 3170156 C T ZNF205 Missense_Mutation p.R499C 0.11 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T5-01 16 31927168 31927168 C G ZNF267 Nonsense_Mutation p.S533* 0.37 TCGA-XF-A9T5-01 16 3434677 3434677 G A ZSCAN32 Missense_Mutation p.S127L 0.35 tolerated(0.83) benign(0) TCGA-XF-A9T5-01 16 3639936 3639936 G A SLX4 Missense_Mutation p.P1235S 0.31 tolerated(0.53) benign(0.178) TCGA-XF-A9T5-01 16 46766183 46766183 G C MYLK3 Missense_Mutation p.P467A 0.38 tolerated(0.73) benign(0.002) TCGA-XF-A9T5-01 16 47732390 47732390 G C PHKB Missense_Mutation p.R1012T 0.24 deleterious(0) possibly_damaging(0.889) TCGA-XF-A9T5-01 16 5094390 5094390 C G C16orf89 3'UTR 0.42 TCGA-XF-A9T5-01 16 5145496 5145496 C G FAM86A Missense_Mutation p.R39T 0.23 deleterious(0) benign(0.159) TCGA-XF-A9T5-01 16 53726197 53726197 G A RPGRIP1L Nonsense_Mutation p.R104* 0.37 TCGA-XF-A9T5-01 16 56921890 56921890 G A SLC12A3 Silent p.K744K 0.17 TCGA-XF-A9T5-01 16 57012050 57012050 C G CETP Silent p.L343L 0.14 TCGA-XF-A9T5-01 16 57719825 57719825 C G GPR97 Missense_Mutation p.F509L 0.43 tolerated(1) benign(0.128) TCGA-XF-A9T5-01 16 66974535 66974535 C T CES2 Silent p.I315I 0.46 TCGA-XF-A9T5-01 16 67424499 67424499 G A TPPP3 Silent p.F75F 0.40 TCGA-XF-A9T5-01 16 67719481 67719481 C T GFOD2 Silent p.E46E 0.14 TCGA-XF-A9T5-01 16 67762290 67762290 C G RANBP10 Intron 0.48 TCGA-XF-A9T5-01 16 67762389 67762389 C G RANBP10 Missense_Mutation p.E460Q 0.44 tolerated(0.32) benign(0.247) TCGA-XF-A9T5-01 16 67981314 67981314 C T SLC12A4 Silent p.G666G 0.33 TCGA-XF-A9T5-01 16 68011733 68011733 C A DPEP3 Splice_Site p.X278_splice 0.59 TCGA-XF-A9T5-01 16 68355360 68355360 G A PRMT7 Missense_Mutation p.D43N 0.19 deleterious(0) possibly_damaging(0.603) TCGA-XF-A9T5-01 16 69390744 69390744 C G TERF2 3'UTR 0.26 TCGA-XF-A9T5-01 16 69390915 69390915 C G TERF2 Missense_Mutation p.Q463H 0.17 deleterious(0.03) possibly_damaging(0.694) TCGA-XF-A9T5-01 16 78064705 78064705 G T CLEC3A Missense_Mutation p.K196N 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-XF-A9T5-01 16 81303956 81303956 G C BCMO1 Missense_Mutation p.E346Q 0.15 tolerated(0.38) benign(0.057) TCGA-XF-A9T5-01 16 81391457 81391457 C G GAN Silent p.L298L 0.20 TCGA-XF-A9T5-01 16 84163854 84163854 G T HSDL1 Missense_Mutation p.P135T 0.19 tolerated(0.12) benign(0.02) TCGA-XF-A9T5-01 16 9009156 9009156 C G USP7 Missense_Mutation p.E345Q 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 16 9196894 9196894 C T C16orf72 Nonsense_Mutation p.Q121* 0.24 TCGA-XF-A9T5-01 16 920728 920728 C A LMF1 Splice_Site p.X411_splice 0.06 TCGA-XF-A9T5-01 17 11597683 11597683 G C DNAH9 Missense_Mutation p.K1597N 0.44 probably_damaging(1) TCGA-XF-A9T5-01 17 18220316 18220316 G A SMCR8 Missense_Mutation p.E405K 0.49 tolerated(0.15) benign(0.008) TCGA-XF-A9T5-01 17 18220730 18220730 G A SMCR8 Missense_Mutation p.E543K 0.62 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T5-01 17 19566758 19566758 C T ALDH3A2 Silent p.F351F 0.25 TCGA-XF-A9T5-01 17 27017147 27017147 G A SUPT6H Silent p.L1130L 0.57 TCGA-XF-A9T5-01 17 27050921 27050921 C G RPL23A 3'UTR 0.49 TCGA-XF-A9T5-01 17 27187590 27187590 C T ERAL1 3'UTR 0.46 TCGA-XF-A9T5-01 17 28435063 28435063 G A EFCAB5 3'UTR 0.44 TCGA-XF-A9T5-01 17 34842620 34842620 G C ZNHIT3 Missense_Mutation p.R26P 0.21 tolerated(0.08) probably_damaging(0.966) TCGA-XF-A9T5-01 17 38028702 38028702 G C ZPBP2 Missense_Mutation p.E196Q 0.48 tolerated(0.08) benign(0.011) TCGA-XF-A9T5-01 17 3844827 3844827 G C ATP2A3 Nonsense_Mutation p.S556* 0.52 TCGA-XF-A9T5-01 17 38643417 38643417 G C TNS4 Missense_Mutation p.P387A 0.53 tolerated(0.21) benign(0.345) TCGA-XF-A9T5-01 17 38816339 38816339 C G KRT222 Missense_Mutation p.E116Q 0.57 tolerated(0.16) probably_damaging(0.968) TCGA-XF-A9T5-01 17 38859345 38859345 C G KRT24 Missense_Mutation p.D201H 0.44 deleterious(0) probably_damaging(0.994) TCGA-XF-A9T5-01 17 38859417 38859417 C T KRT24 Missense_Mutation p.D177N 0.54 deleterious(0) possibly_damaging(0.725) TCGA-XF-A9T5-01 17 39137060 39137060 C G KRT40 Missense_Mutation p.E318Q 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T5-01 17 3947661 3947661 C G ZZEF1 Missense_Mutation p.R2008T 0.15 tolerated(0.62) benign(0.013) TCGA-XF-A9T5-01 17 39768437 39768437 G C KRT16 Missense_Mutation p.F168L 0.53 deleterious(0.04) benign(0.085) TCGA-XF-A9T5-01 17 40010829 40010829 C G KLHL11 Missense_Mutation p.L430F 0.57 tolerated(0.4) benign(0.021) TCGA-XF-A9T5-01 17 40327651 40327651 G A KCNH4 Silent p.I311I 0.52 TCGA-XF-A9T5-01 17 40833844 40833844 C G CCR10 5'UTR 0.29 TCGA-XF-A9T5-01 17 40860013 40860013 C G EZH1 Missense_Mutation p.Q541H 0.55 tolerated(0.17) probably_damaging(0.986) TCGA-XF-A9T5-01 17 41019607 41019607 C T AOC4P RNA 0.40 TCGA-XF-A9T5-01 17 44788416 44788416 G A NSF Missense_Mutation p.D520N 0.67 tolerated(0.05) benign(0.087) TCGA-XF-A9T5-01 17 48274561 48274561 G A COL1A1 Missense_Mutation p.R244C 0.12 unknown(0) TCGA-XF-A9T5-01 17 48275095 48275095 C T COL1A1 Missense_Mutation p.D232N 0.19 unknown(0) TCGA-XF-A9T5-01 17 48918366 48918366 C T WFIKKN2 Missense_Mutation p.L573F 0.47 tolerated_low_confidence(0.07) benign(0.312) TCGA-XF-A9T5-01 17 56060619 56060619 C G VEZF1 Missense_Mutation p.E57Q 0.11 deleterious(0.02) possibly_damaging(0.867) TCGA-XF-A9T5-01 17 56540534 56540534 G C HSF5 Missense_Mutation p.S384C 0.49 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 17 59876559 59876559 C T BRIP1 Silent p.Q414Q 0.14 TCGA-XF-A9T5-01 17 60757580 60757580 G A MRC2 Missense_Mutation p.R783Q 0.57 tolerated(0.08) probably_damaging(0.989) TCGA-XF-A9T5-01 17 61498891 61498891 G C TANC2 Missense_Mutation p.D1850H 0.46 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-XF-A9T5-01 17 62223773 62223773 C T TEX2 3'Flank 0.59 TCGA-XF-A9T5-01 17 7216442 7216442 G A GPS2 Missense_Mutation p.S269F 0.54 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-XF-A9T5-01 17 7216775 7216775 G T GPS2 Missense_Mutation p.F216L 0.70 deleterious(0.01) possibly_damaging(0.682) TCGA-XF-A9T5-01 17 73269533 73269533 C T SLC25A19 Silent p.%3D 0.50 TCGA-XF-A9T5-01 17 73625194 73625194 C T RECQL5 Missense_Mutation p.R770Q 0.40 tolerated(0.6) benign(0.003) TCGA-XF-A9T5-01 17 74283881 74283881 C T QRICH2 Missense_Mutation p.R1133K 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9T5-01 17 74395552 74395552 G C UBE2O Missense_Mutation p.R536G 0.51 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T5-01 17 74734570 74734570 C T MFSD11 Intron 0.60 TCGA-XF-A9T5-01 17 74865046 74865046 G A MGAT5B 5'Flank 0.66 TCGA-XF-A9T5-01 17 7578510 7578510 G - TP53 Frame_Shift_Del p.C141Afs*29 0.33 TCGA-XF-A9T5-01 17 78447223 78447223 C T NPTX1 Missense_Mutation p.G225E 0.65 tolerated(0.08) benign(0.002) TCGA-XF-A9T5-01 17 80790328 80790328 C G ZNF750 Translation_Start_Site p.M1? 0.39 deleterious(0) probably_damaging(0.986) TCGA-XF-A9T5-01 18 10680264 10680264 C G PIEZO2 Missense_Mutation p.Q2515H 0.39 tolerated(0.1) benign(0.062) TCGA-XF-A9T5-01 18 12493153 12493153 G C SPIRE1 Silent p.L369L 0.23 TCGA-XF-A9T5-01 18 12673257 12673257 C G CEP76 3'UTR 0.21 TCGA-XF-A9T5-01 18 13057601 13057601 G C CEP192 Missense_Mutation p.E1376Q 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-XF-A9T5-01 18 13105062 13105062 G A CEP192 Missense_Mutation p.S2344N 0.24 deleterious(0.02) possibly_damaging(0.549) TCGA-XF-A9T5-01 18 19283602 19283602 C T ABHD3 Missense_Mutation p.R90Q 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T5-01 18 21662884 21662884 C G TTC39C Missense_Mutation p.L275V 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 18 29100910 29100910 G C DSG2 Missense_Mutation p.E121Q 0.25 tolerated(0.29) probably_damaging(0.997) TCGA-XF-A9T5-01 18 32844029 32844029 G A ZSCAN30 Silent p.F96F 0.10 TCGA-XF-A9T5-01 18 56246090 56246090 G C ALPK2 Missense_Mutation p.L640V 0.20 tolerated(0.18) benign(0.063) TCGA-XF-A9T5-01 18 624873 624873 G C CLUL1 Silent p.L88L 0.19 TCGA-XF-A9T5-01 18 64211449 64211449 C G CDH19 Missense_Mutation p.E325Q 0.19 deleterious(0) probably_damaging(0.914) TCGA-XF-A9T5-01 18 67872466 67872466 G A RTTN Silent p.L39L 0.22 TCGA-XF-A9T5-01 18 6983226 6983226 C G LAMA1 Missense_Mutation p.E1890Q 0.10 tolerated(0.49) benign(0.104) TCGA-XF-A9T5-01 18 7010203 7010203 C G LAMA1 Missense_Mutation p.R1290T 0.23 tolerated(1) benign(0.003) TCGA-XF-A9T5-01 18 8069870 8069870 C G PTPRM Nonsense_Mutation p.S440* 0.29 TCGA-XF-A9T5-01 19 11649747 11649747 C G CNN1 Missense_Mutation p.S2C 0.64 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-XF-A9T5-01 19 11890943 11890943 C T ZNF441 Missense_Mutation p.P102S 0.44 tolerated(0.47) benign(0.039) TCGA-XF-A9T5-01 19 12433418 12433418 G C ZNF563 Missense_Mutation p.I37M 0.33 deleterious(0.02) probably_damaging(1) TCGA-XF-A9T5-01 19 13563773 13563773 G A CACNA1A Silent p.I152I 0.19 TCGA-XF-A9T5-01 19 14211652 14211652 C T PRKACA Silent p.R135R 0.40 TCGA-XF-A9T5-01 19 15281193 15281193 G C NOTCH3 Missense_Mutation p.S1688C 0.21 tolerated(0.05) benign(0.285) TCGA-XF-A9T5-01 19 15350578 15350578 C T BRD4 Missense_Mutation p.E1113K 0.16 benign(0.292) TCGA-XF-A9T5-01 19 17534853 17534853 G C MVB12A Missense_Mutation p.E227Q 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-XF-A9T5-01 19 23328587 23328587 G C ZNF730 Missense_Mutation p.K247N 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-XF-A9T5-01 19 24309554 24309554 C G ZNF254 Nonsense_Mutation p.S251* 0.20 TCGA-XF-A9T5-01 19 31770003 31770003 G A TSHZ3 Silent p.H232H 0.21 TCGA-XF-A9T5-01 19 32843883 32843883 G A ZNF507 Silent p.Q49Q 0.27 TCGA-XF-A9T5-01 19 35512416 35512416 G A GRAMD1A Missense_Mutation p.E496K 0.19 deleterious(0) possibly_damaging(0.694) TCGA-XF-A9T5-01 19 3576599 3576599 G A HMG20B Missense_Mutation p.E190K 0.52 deleterious(0) possibly_damaging(0.524) TCGA-XF-A9T5-01 19 36041932 36041932 G C ATP4A Missense_Mutation p.I989M 0.23 deleterious(0.03) possibly_damaging(0.591) TCGA-XF-A9T5-01 19 36340483 36340483 G C NPHS1 Silent p.P227P 0.17 TCGA-XF-A9T5-01 19 36362795 36362795 G A APLP1 Missense_Mutation p.R236K 0.18 tolerated(0.71) benign(0.014) TCGA-XF-A9T5-01 19 36641859 36641859 C G COX7A1 3'UTR 0.30 TCGA-XF-A9T5-01 19 37210586 37210586 C T ZNF567 Silent p.L289L 0.20 TCGA-XF-A9T5-01 19 40224976 40224976 G A CLC Nonsense_Mutation p.Q84* 0.16 TCGA-XF-A9T5-01 19 40521639 40521639 C A ZNF546 Missense_Mutation p.T821N 0.16 tolerated(0.15) benign(0.004) TCGA-XF-A9T5-01 19 42563498 42563498 C T GRIK5 Intron 0.31 TCGA-XF-A9T5-01 19 42791992 42791992 G A CIC Missense_Mutation p.D266N 0.23 probably_damaging(0.93) TCGA-XF-A9T5-01 19 4333783 4333783 C G STAP2 Missense_Mutation p.E69Q 0.50 deleterious(0.02) benign(0.3) TCGA-XF-A9T5-01 19 44980660 44980660 G C ZNF180 Missense_Mutation p.Q680E 0.18 tolerated(0.35) benign(0.081) TCGA-XF-A9T5-01 19 50412038 50412038 C G NUP62 Missense_Mutation p.E343Q 0.14 deleterious(0.02) possibly_damaging(0.466) TCGA-XF-A9T5-01 19 50826728 50826728 G A KCNC3 Silent p.F494F 0.29 TCGA-XF-A9T5-01 19 51192473 51192473 G A SHANK1 Silent p.F676F 0.26 TCGA-XF-A9T5-01 19 51729084 51729084 C T CD33 Silent p.L148L 0.20 TCGA-XF-A9T5-01 19 54081038 54081038 G A ZNF331 Silent p.V408V 0.14 TCGA-XF-A9T5-01 19 54721089 54721089 G A LILRB3 Missense_Mutation p.S591F 0.20 deleterious(0) benign(0.342) TCGA-XF-A9T5-01 19 56153912 56153912 C T ZNF580 Missense_Mutation p.S13F 0.11 tolerated(0.21) unknown(0) TCGA-XF-A9T5-01 19 56443615 56443615 C T NLRP13 Silent p.L21L 0.24 TCGA-XF-A9T5-01 19 57066760 57066760 A G ZFP28 Nonstop_Mutation p.*869Wext*8 0.19 TCGA-XF-A9T5-01 19 57085884 57085884 C G ZNF470 Nonsense_Mutation p.S61* 0.11 TCGA-XF-A9T5-01 19 57863021 57863021 C T ZNF304 5'UTR 0.18 TCGA-XF-A9T5-01 19 58189662 58189662 G A ZSCAN4 Missense_Mutation p.E231K 0.19 tolerated(0.11) benign(0.004) TCGA-XF-A9T5-01 19 58262209 58262209 C G AC003006.7 Silent p.L30L 0.17 TCGA-XF-A9T5-01 19 58290800 58290800 G C ZNF586 Missense_Mutation p.R282T 0.23 tolerated(0.07) possibly_damaging(0.877) TCGA-XF-A9T5-01 1 103548364 103548364 G A COL11A1 Missense_Mutation p.P91S 0.14 possibly_damaging(0.573) TCGA-XF-A9T5-01 1 10363598 10363598 G C KIF1B Intron 0.21 TCGA-XF-A9T5-01 1 10509976 10509976 C G CORT 5'UTR 0.17 TCGA-XF-A9T5-01 1 108138883 108138883 C G VAV3 Missense_Mutation p.K767N 0.35 deleterious(0.02) benign(0.274) TCGA-XF-A9T5-01 1 108417567 108417567 G T VAV3 Missense_Mutation p.L93I 0.20 tolerated(0.05) possibly_damaging(0.868) TCGA-XF-A9T5-01 1 110527764 110527764 C T AHCYL1 Silent p.F30F 0.38 TCGA-XF-A9T5-01 1 111437634 111437634 C G CD53 Nonsense_Mutation p.S127* 0.28 TCGA-XF-A9T5-01 1 111892843 111892843 G A PIFO Missense_Mutation p.E169K 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 1 111962241 111962241 G A OVGP1 Silent p.F337F 0.15 TCGA-XF-A9T5-01 1 112303423 112303423 G C DDX20 Missense_Mutation p.R259T 0.23 deleterious(0.02) benign(0.245) TCGA-XF-A9T5-01 1 112308684 112308684 G A DDX20 Missense_Mutation p.M546I 0.15 tolerated(0.16) benign(0.008) TCGA-XF-A9T5-01 1 113010200 113010200 G C WNT2B Missense_Mutation p.G14A 0.35 tolerated_low_confidence(0.78) benign(0.004) TCGA-XF-A9T5-01 1 114191917 114191917 C T MAGI3 Silent p.F738F 0.41 TCGA-XF-A9T5-01 1 115524099 115524099 C T SYCP1 Missense_Mutation p.S842F 0.24 tolerated(0.11) benign(0.365) TCGA-XF-A9T5-01 1 12835217 12835217 G T PRAMEF12 Silent p.L69L 0.15 TCGA-XF-A9T5-01 1 13330559 13330559 C T PRAMEF3 Missense_Mutation p.D243N 0.19 tolerated(0.29) benign(0.255) TCGA-XF-A9T5-01 1 149858827 149858827 C T HIST2H2AC Silent p.V101V 0.20 TCGA-XF-A9T5-01 1 150531116 150531116 G C ADAMTSL4 Missense_Mutation p.W850C 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 1 150923213 150923213 G A SETDB1 Silent p.K620K 0.16 TCGA-XF-A9T5-01 1 150933236 150933236 G T SETDB1 Nonsense_Mutation p.E900* 0.44 TCGA-XF-A9T5-01 1 151860784 151860784 G A THEM4 Silent p.I174I 0.14 TCGA-XF-A9T5-01 1 153609047 153609047 G C CHTOP Splice_Site 0.50 TCGA-XF-A9T5-01 1 154223693 154223693 C T UBAP2L Missense_Mutation p.P464S 0.12 deleterious(0.03) unknown(0) TCGA-XF-A9T5-01 1 154224054 154224054 C G UBAP2L Missense_Mutation p.S530C 0.22 deleterious(0.03) unknown(0) TCGA-XF-A9T5-01 1 155171854 155171854 G A THBS3 Intron 0.45 TCGA-XF-A9T5-01 1 155290498 155290498 C G RUSC1 5'Flank 0.54 TCGA-XF-A9T5-01 1 156290665 156290665 C G CCT3 Missense_Mutation p.E192Q 0.18 deleterious(0.04) probably_damaging(0.981) TCGA-XF-A9T5-01 1 156521830 156521830 C G IQGAP3 Silent p.L502L 0.44 TCGA-XF-A9T5-01 1 156533448 156533448 G A IQGAP3 Silent p.L172L 0.56 TCGA-XF-A9T5-01 1 156714024 156714024 G A HDGF Silent p.V156V 0.47 TCGA-XF-A9T5-01 1 158650370 158650370 C T SPTA1 Intron 0.11 TCGA-XF-A9T5-01 1 159889505 159889505 C T TAGLN2 Missense_Mutation p.E101K 0.51 tolerated(0.08) benign(0.089) TCGA-XF-A9T5-01 1 161953865 161953865 G C OLFML2B Nonsense_Mutation p.S618* 0.15 TCGA-XF-A9T5-01 1 164789372 164789372 A G PBX1 Missense_Mutation p.N354S 0.41 tolerated(0.14) probably_damaging(0.997) TCGA-XF-A9T5-01 1 167365615 167365615 G C POU2F1 Missense_Mutation p.K360N 0.42 deleterious(0) unknown(0) TCGA-XF-A9T5-01 1 167382323 167382323 G C POU2F1 Missense_Mutation p.M654I 0.44 deleterious(0.03) benign(0.389) TCGA-XF-A9T5-01 1 16907348 16907348 G C NBPF1 Missense_Mutation p.H495D 0.02 tolerated(0.13) probably_damaging(0.987) TCGA-XF-A9T5-01 1 16913653 16913653 G C NBPF1 Missense_Mutation p.H224D 0.06 tolerated(0.15) benign(0.402) TCGA-XF-A9T5-01 1 169510773 169510773 G C F5 Silent p.V1185V 0.48 TCGA-XF-A9T5-01 1 169513597 169513597 C T F5 Missense_Mutation p.E638K 0.22 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 1 169858017 169858017 C T SCYL3 5'UTR 0.13 TCGA-XF-A9T5-01 1 174210656 174210656 C G RABGAP1L Missense_Mutation p.S193C 0.19 tolerated(0.06) benign(0.25) TCGA-XF-A9T5-01 1 175331835 175331835 C T TNR Missense_Mutation p.E940K 0.14 deleterious(0.01) possibly_damaging(0.877) TCGA-XF-A9T5-01 1 177250459 177250459 C T BRINP2 Missense_Mutation p.A716V 0.21 tolerated(0.25) probably_damaging(0.994) TCGA-XF-A9T5-01 1 183197634 183197634 G C LAMC2 Missense_Mutation p.D532H 0.45 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T5-01 1 183230154 183230154 G C NMNAT2 Silent p.V268V 0.44 TCGA-XF-A9T5-01 1 185270114 185270114 G A IVNS1ABP Silent p.L370L 0.12 TCGA-XF-A9T5-01 1 193066729 193066729 C T GLRX2 Missense_Mutation p.M116I 0.13 tolerated(0.16) possibly_damaging(0.901) TCGA-XF-A9T5-01 1 19480410 19480410 G C UBR4 Missense_Mutation p.S2161C 0.14 probably_damaging(0.946) TCGA-XF-A9T5-01 1 19524274 19524274 C T UBR4 Silent p.L261L 0.16 TCGA-XF-A9T5-01 1 19525423 19525423 C T UBR4 Splice_Site p.X127_splice 0.11 TCGA-XF-A9T5-01 1 196694328 196694328 G T CFH Missense_Mutation p.V592L 0.34 tolerated(0.2) benign(0.038) TCGA-XF-A9T5-01 1 197072595 197072595 T G ASPM Missense_Mutation p.Q1929P 0.18 deleterious(0.01) possibly_damaging(0.836) TCGA-XF-A9T5-01 1 198671606 198671606 C T PTPRC Missense_Mutation p.S177F 0.49 deleterious(0.01) possibly_damaging(0.907) TCGA-XF-A9T5-01 1 201027589 201027589 C G CACNA1S Missense_Mutation p.D1186H 0.09 deleterious(0) probably_damaging(0.994) TCGA-XF-A9T5-01 1 201354909 201354909 C T LAD1 Missense_Mutation p.E351K 0.17 tolerated(0.08) possibly_damaging(0.721) TCGA-XF-A9T5-01 1 203030125 203030125 G A PPFIA4 Missense_Mutation p.E432K 0.39 deleterious(0) probably_damaging(0.935) TCGA-XF-A9T5-01 1 203676190 203676190 G C ATP2B4 Missense_Mutation p.D385H 0.10 tolerated(0.07) benign(0.018) TCGA-XF-A9T5-01 1 209791919 209791919 C T LAMB3 Silent p.L929L 0.14 TCGA-XF-A9T5-01 1 210857024 210857024 C G KCNH1 Missense_Mutation p.E857Q 0.05 tolerated_low_confidence(0.1) benign(0.04) TCGA-XF-A9T5-01 1 212560363 212560363 G C TMEM206 Missense_Mutation p.I132M 0.15 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-XF-A9T5-01 1 212798583 212798583 C T FAM71A Silent p.L122L 0.41 TCGA-XF-A9T5-01 1 216498863 216498863 C A USH2A Silent p.P309P 0.13 TCGA-XF-A9T5-01 1 220327382 220327382 G C RAB3GAP2 Missense_Mutation p.F1191L 0.09 deleterious(0.01) possibly_damaging(0.839) TCGA-XF-A9T5-01 1 22142525 22142525 G A LDLRAD2 Missense_Mutation p.D201N 0.18 deleterious(0.01) probably_damaging(1) TCGA-XF-A9T5-01 1 222732047 222732047 C T TAF1A Missense_Mutation p.M436I 0.16 tolerated(0.07) benign(0.012) TCGA-XF-A9T5-01 1 226420748 226420748 T C LIN9 Intron 0.12 TCGA-XF-A9T5-01 1 227935798 227935798 G A SNAP47 Missense_Mutation p.E166K 0.16 deleterious(0) possibly_damaging(0.641) TCGA-XF-A9T5-01 1 228476400 228476400 G A OBSCN Missense_Mutation p.E3813K 0.15 possibly_damaging(0.483) TCGA-XF-A9T5-01 1 228602726 228602726 G A TRIM17 Silent p.C16C 0.50 TCGA-XF-A9T5-01 1 23111273 23111273 G C EPHB2 Missense_Mutation p.S172T 0.31 deleterious(0.02) benign(0.003) TCGA-XF-A9T5-01 1 231114988 231114988 G A ARV1 Missense_Mutation p.R46Q 0.14 tolerated(0.1) probably_damaging(0.943) TCGA-XF-A9T5-01 1 23397735 23397735 G A KDM1A Silent p.E477E 0.19 TCGA-XF-A9T5-01 1 235618981 235618981 C G B3GALNT2 Silent p.T347T 0.31 TCGA-XF-A9T5-01 1 235972890 235972890 G A LYST Nonsense_Mutation p.Q410* 0.46 TCGA-XF-A9T5-01 1 237969511 237969511 C T RYR2 Silent p.H4742H 0.09 TCGA-XF-A9T5-01 1 240421294 240421294 T C FMN2 Missense_Mutation p.M1372T 0.42 possibly_damaging(0.812) TCGA-XF-A9T5-01 1 24388444 24388444 G C MYOM3 Nonsense_Mutation p.S1309* 0.34 TCGA-XF-A9T5-01 1 247655073 247655073 C T OR2W5 RNA 0.15 TCGA-XF-A9T5-01 1 2489885 2489885 G T TNFRSF14 Silent p.L94L 0.31 TCGA-XF-A9T5-01 1 26189743 26189743 C T PAQR7 Silent p.Q196Q 0.23 TCGA-XF-A9T5-01 1 27059213 27059213 C G ARID1A Nonsense_Mutation p.S617* 0.18 TCGA-XF-A9T5-01 1 29475484 29475484 C G SRSF4 Missense_Mutation p.R308T 0.22 tolerated_low_confidence(0.13) unknown(0) TCGA-XF-A9T5-01 1 32568345 32568345 G A TMEM39B 3'UTR 0.38 TCGA-XF-A9T5-01 1 32796439 32796439 C T HDAC1 Silent p.Y303Y 0.40 TCGA-XF-A9T5-01 1 33764584 33764584 G A ZNF362 Silent p.V400V 0.17 TCGA-XF-A9T5-01 1 36367140 36367140 G C AGO1 Missense_Mutation p.M362I 0.13 tolerated(0.11) probably_damaging(0.978) TCGA-XF-A9T5-01 1 39784230 39784230 G T MACF1 Missense_Mutation p.M1301I 0.14 possibly_damaging(0.717) TCGA-XF-A9T5-01 1 40432523 40432523 C T MFSD2A Silent p.F295F 0.31 TCGA-XF-A9T5-01 1 40704122 40704122 G A RLF Missense_Mutation p.E1250K 0.17 tolerated(0.33) benign(0.029) TCGA-XF-A9T5-01 1 40704841 40704841 G A RLF Silent p.R1489R 0.22 TCGA-XF-A9T5-01 1 42041315 42041315 C G HIVEP3 Missense_Mutation p.A1703P 0.19 probably_damaging(0.914) TCGA-XF-A9T5-01 1 43909277 43909277 C T SZT2 Missense_Mutation p.R2822C 0.38 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T5-01 1 45810952 45810952 G C TESK2 Missense_Mutation p.L426V 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-XF-A9T5-01 1 52499214 52499214 C A KTI12 Missense_Mutation p.D74Y 0.19 deleterious(0) probably_damaging(0.936) TCGA-XF-A9T5-01 1 52499352 52499352 C T KTI12 Missense_Mutation p.E28K 0.33 tolerated(0.32) benign(0.094) TCGA-XF-A9T5-01 1 52820520 52820520 G A CC2D1B Silent p.F783F 0.10 TCGA-XF-A9T5-01 1 53925079 53925079 C G DMRTB1 5'UTR 0.37 TCGA-XF-A9T5-01 1 54262803 54262803 G A NDC1 Nonsense_Mutation p.Q413* 0.15 TCGA-XF-A9T5-01 1 55544257 55544257 C T USP24 Missense_Mutation p.C2423Y 0.36 deleterious(0.03) possibly_damaging(0.547) TCGA-XF-A9T5-01 1 63294731 63294731 G C ATG4C Missense_Mutation p.D273H 0.12 tolerated(0.11) probably_damaging(0.975) TCGA-XF-A9T5-01 1 6520105 6520105 G A ESPN Missense_Mutation p.E822K 0.24 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T5-01 1 67452134 67452134 G C MIER1 3'Flank 0.32 TCGA-XF-A9T5-01 1 87045627 87045627 C T CLCA4 Nonsense_Mutation p.Q787* 0.22 TCGA-XF-A9T5-01 1 89271195 89271195 G C PKN2 Missense_Mutation p.R506T 0.30 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T5-01 1 90180570 90180570 C T LRRC8C 3'UTR 0.21 TCGA-XF-A9T5-01 1 92184931 92184931 G A TGFBR3 Silent p.L502L 0.21 TCGA-XF-A9T5-01 1 94140385 94140385 G T BCAR3 Silent p.L34L 0.36 TCGA-XF-A9T5-01 1 94342731 94342731 C G DNTTIP2 Missense_Mutation p.E254Q 0.13 tolerated(1) benign(0) TCGA-XF-A9T5-01 20 10030676 10030676 G C ANKEF1 Missense_Mutation p.D487H 0.43 deleterious(0.04) probably_damaging(0.994) TCGA-XF-A9T5-01 20 11903653 11903653 C T BTBD3 Missense_Mutation p.A303V 0.20 tolerated(0.07) benign(0.009) TCGA-XF-A9T5-01 20 16360678 16360678 T C KIF16B Missense_Mutation p.S657G 0.15 deleterious(0.02) possibly_damaging(0.72) TCGA-XF-A9T5-01 20 1960948 1960948 C T PDYN 3'UTR 0.37 TCGA-XF-A9T5-01 20 20621513 20621513 C T RALGAPA2 Missense_Mutation p.E128K 0.41 deleterious(0) probably_damaging(0.971) TCGA-XF-A9T5-01 20 23545586 23545586 C T CST9L Silent p.%3D 0.39 TCGA-XF-A9T5-01 20 31383468 31383468 C T DNMT3B Missense_Mutation p.S422L 0.62 tolerated(0.44) benign(0.001) TCGA-XF-A9T5-01 20 3297377 3297377 G A C20orf194 Missense_Mutation p.S511F 0.47 deleterious(0) benign(0.104) TCGA-XF-A9T5-01 20 33315093 33315093 G A NCOA6 Nonsense_Mutation p.R2040* 0.19 TCGA-XF-A9T5-01 20 34214120 34214120 C G CPNE1 3'UTR 0.47 TCGA-XF-A9T5-01 20 3728902 3728902 C A HSPA12B Silent p.L238L 0.24 TCGA-XF-A9T5-01 20 39833004 39833004 G C ZHX3 Missense_Mutation p.P185A 0.16 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 20 39833222 39833222 C A ZHX3 Missense_Mutation p.S112I 0.18 tolerated(0.26) benign(0) TCGA-XF-A9T5-01 20 42354858 42354858 G A GTSF1L 3'UTR 0.07 TCGA-XF-A9T5-01 20 44430062 44430062 G A DNTTIP1 Missense_Mutation p.E155K 0.07 tolerated(0.05) possibly_damaging(0.627) TCGA-XF-A9T5-01 20 44757658 44757658 C G CD40 Missense_Mutation p.I271M 0.40 tolerated(0.06) probably_damaging(0.966) TCGA-XF-A9T5-01 20 45354005 45354005 C T SLC2A10 Silent p.F110F 0.13 TCGA-XF-A9T5-01 20 5560741 5560741 C T GPCPD1 Missense_Mutation p.C129Y 0.36 deleterious(0.03) probably_damaging(0.991) TCGA-XF-A9T5-01 20 57415667 57415667 G A RP4-806M20.3 5'Flank 0.22 TCGA-XF-A9T5-01 20 60881224 60881224 C T ADRM1 Intron 0.35 TCGA-XF-A9T5-01 20 61511563 61511563 C G DIDO1 Missense_Mutation p.Q1915H 0.43 probably_damaging(0.998) TCGA-XF-A9T5-01 20 61870838 61870838 G A BIRC7 Missense_Mutation p.V260M 0.12 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T5-01 20 62614566 62614566 G A PRPF6 Missense_Mutation p.E80K 0.47 deleterious(0.05) probably_damaging(1) TCGA-XF-A9T5-01 20 8719950 8719950 G A PLCB1 Missense_Mutation p.E751K 0.17 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T5-01 21 18933032 18933032 C G CXADR Missense_Mutation p.S195C 0.22 deleterious(0.01) possibly_damaging(0.762) TCGA-XF-A9T5-01 21 43230651 43230651 C G PRDM15 Missense_Mutation p.K1203N 0.14 deleterious(0.01) probably_damaging(0.964) TCGA-XF-A9T5-01 21 43309386 43309386 C G C2CD2 Missense_Mutation p.M646I 0.19 deleterious(0.01) benign(0.164) TCGA-XF-A9T5-01 21 47746425 47746425 C T PCNT Silent p.L63L 0.16 TCGA-XF-A9T5-01 21 47831328 47831328 G A PCNT Missense_Mutation p.G1781R 0.22 benign(0.001) TCGA-XF-A9T5-01 22 17690354 17690354 T A CECR1 Nonsense_Mutation p.K72* 0.10 TCGA-XF-A9T5-01 22 19750807 19750807 C G TBX1 Missense_Mutation p.P152A 0.45 deleterious(0.03) probably_damaging(0.986) TCGA-XF-A9T5-01 22 21138471 21138471 G C SERPIND1 Missense_Mutation p.K367N 0.20 deleterious(0.01) probably_damaging(0.975) TCGA-XF-A9T5-01 22 26086240 26086240 C T ADRBK2 Missense_Mutation p.H348Y 0.18 deleterious(0.01) possibly_damaging(0.868) TCGA-XF-A9T5-01 22 26873030 26873030 C G HPS4 Missense_Mutation p.D69H 0.15 deleterious(0) possibly_damaging(0.77) TCGA-XF-A9T5-01 22 27026404 27026404 C T CRYBA4 Missense_Mutation p.H182Y 0.44 tolerated(0.07) probably_damaging(0.998) TCGA-XF-A9T5-01 22 31534302 31534302 C G PLA2G3 Missense_Mutation p.E248Q 0.36 tolerated(0.08) benign(0.259) TCGA-XF-A9T5-01 22 35682019 35682019 G A HMGXB4 Missense_Mutation p.E443K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9T5-01 22 36124779 36124779 C T APOL5 Missense_Mutation p.S379L 0.29 deleterious_low_confidence(0.02) benign(0.307) TCGA-XF-A9T5-01 22 37462900 37462900 G A TMPRSS6 Missense_Mutation p.A748V 0.13 tolerated(0.19) probably_damaging(0.979) TCGA-XF-A9T5-01 22 39909602 39909602 C T MIEF1 Silent p.D222D 0.47 TCGA-XF-A9T5-01 22 41833340 41833340 C G TOB2 Missense_Mutation p.E4Q 0.32 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 22 42608764 42608764 G A TCF20 Nonsense_Mutation p.Q850* 0.16 TCGA-XF-A9T5-01 22 44553894 44553894 G T PARVB Missense_Mutation p.M325I 0.18 tolerated(0.53) benign(0.143) TCGA-XF-A9T5-01 22 46614186 46614186 C G PPARA Silent p.L132L 0.22 TCGA-XF-A9T5-01 22 50301458 50301458 G C ALG12 Silent p.L301L 0.23 TCGA-XF-A9T5-01 22 50636292 50636292 G A TRABD Missense_Mutation p.E238K 0.17 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T5-01 2 100199295 100199295 C A AFF3 Missense_Mutation p.D945Y 0.19 deleterious(0) benign(0.381) TCGA-XF-A9T5-01 2 102774205 102774205 T C IL1R1 Silent p.L7L 0.11 TCGA-XF-A9T5-01 2 108489240 108489240 G C RGPD4 Missense_Mutation p.E1594Q 0.14 tolerated_low_confidence(0.13) benign(0.186) TCGA-XF-A9T5-01 2 109098889 109098889 G C GCC2 Missense_Mutation p.Q1109H 0.39 deleterious(0.01) benign(0.365) TCGA-XF-A9T5-01 2 109527363 109527363 G C EDAR Intron 0.23 TCGA-XF-A9T5-01 2 112614413 112614413 G A ANAPC1 Missense_Mutation p.S470L 0.35 tolerated(0.25) benign(0.08) TCGA-XF-A9T5-01 2 112614424 112614424 G A ANAPC1 Silent p.L466L 0.33 TCGA-XF-A9T5-01 2 113332689 113332689 G C POLR1B Missense_Mutation p.E931Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 2 120395873 120395873 G C PCDP1 Silent p.L671L 0.22 TCGA-XF-A9T5-01 2 128477159 128477159 G A WDR33 Missense_Mutation p.H814Y 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.534) TCGA-XF-A9T5-01 2 128481983 128481983 G T WDR33 Missense_Mutation p.H374N 0.24 deleterious(0) unknown(0) TCGA-XF-A9T5-01 2 130786001 130786001 C T FAR2P1 RNA 0.18 TCGA-XF-A9T5-01 2 130872836 130872836 C T POTEF Missense_Mutation p.R196Q 0.20 tolerated_low_confidence(0.33) benign(0.162) TCGA-XF-A9T5-01 2 133542698 133542698 C G NCKAP5 Missense_Mutation p.E562D 0.44 tolerated(0.87) benign(0.009) TCGA-XF-A9T5-01 2 136602232 136602232 C G MCM6 Missense_Mutation p.K744N 0.39 tolerated(0.16) benign(0.12) TCGA-XF-A9T5-01 2 1457477 1457477 G C TPO Missense_Mutation p.R165T 0.26 tolerated(0.18) benign(0.119) TCGA-XF-A9T5-01 2 152108121 152108121 G C RBM43 Missense_Mutation p.L125V 0.29 deleterious(0.02) possibly_damaging(0.586) TCGA-XF-A9T5-01 2 152320899 152320899 A G RIF1 Missense_Mutation p.Q1622R 0.18 tolerated(0.14) benign(0.002) TCGA-XF-A9T5-01 2 155566127 155566127 C A KCNJ3 Missense_Mutation p.P239T 0.09 tolerated(0.09) possibly_damaging(0.693) TCGA-XF-A9T5-01 2 15763704 15763704 G T DDX1 Missense_Mutation p.G531V 0.26 deleterious(0) probably_damaging(0.91) TCGA-XF-A9T5-01 2 158626892 158626892 C T ACVR1 Missense_Mutation p.E260K 0.09 deleterious(0) possibly_damaging(0.842) TCGA-XF-A9T5-01 2 158626899 158626899 C T ACVR1 Silent p.L257L 0.09 TCGA-XF-A9T5-01 2 159481819 159481819 G A PKP4 Missense_Mutation p.A345T 0.20 tolerated(0.07) benign(0.353) TCGA-XF-A9T5-01 2 160139491 160139491 C T WDSUB1 Silent p.L30L 0.26 TCGA-XF-A9T5-01 2 160885451 160885451 C T PLA2R1 Missense_Mutation p.E289K 0.26 tolerated(0.83) benign(0.057) TCGA-XF-A9T5-01 2 160885467 160885467 C G PLA2R1 Missense_Mutation p.M283I 0.30 deleterious(0.01) benign(0.005) TCGA-XF-A9T5-01 2 161056601 161056601 G C ITGB6 5'UTR 0.23 TCGA-XF-A9T5-01 2 163136547 163136547 C G IFIH1 Missense_Mutation p.E534Q 0.41 tolerated(0.2) possibly_damaging(0.542) TCGA-XF-A9T5-01 2 167261983 167261983 C T SCN7A 3'UTR 0.36 TCGA-XF-A9T5-01 2 16734194 16734194 G C FAM49A 3'UTR 0.14 TCGA-XF-A9T5-01 2 169939948 169939948 C T DHRS9 Silent p.L141L 0.28 TCGA-XF-A9T5-01 2 169939984 169939984 G T DHRS9 Missense_Mutation p.K153N 0.19 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T5-01 2 170591886 170591886 C T KLHL23 Missense_Mutation p.S121L 0.33 deleterious(0.01) benign(0.185) TCGA-XF-A9T5-01 2 172016964 172016964 C T TLK1 5'UTR 0.25 TCGA-XF-A9T5-01 2 179365833 179365833 C T PLEKHA3 Silent p.L235L 0.15 TCGA-XF-A9T5-01 2 179404840 179404840 C T TTN Missense_Mutation p.E32685K 0.11 TCGA-XF-A9T5-01 2 179424630 179424630 C G TTN Missense_Mutation p.Q28743H 0.18 TCGA-XF-A9T5-01 2 179438393 179438393 C T TTN Missense_Mutation p.D24156N 0.34 TCGA-XF-A9T5-01 2 179454071 179454071 C G TTN Missense_Mutation p.R20794T 0.33 TCGA-XF-A9T5-01 2 179465750 179465750 C G TTN Missense_Mutation p.K18627N 0.40 TCGA-XF-A9T5-01 2 179466074 179466074 G A TTN Silent p.F18550F 0.33 TCGA-XF-A9T5-01 2 179469882 179469882 C G TTN Missense_Mutation p.E18008Q 0.20 TCGA-XF-A9T5-01 2 179598097 179598097 C T TTN Missense_Mutation p.R5308Q 0.34 TCGA-XF-A9T5-01 2 182343483 182343483 G C ITGA4 Splice_Site p.X186_splice 0.20 TCGA-XF-A9T5-01 2 182347245 182347245 G A ITGA4 Missense_Mutation p.G303E 0.15 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 2 183584842 183584842 G C DNAJC10 Missense_Mutation p.E105Q 0.38 tolerated(0.38) benign(0.001) TCGA-XF-A9T5-01 2 18766403 18766403 C G NT5C1B Intron 0.31 TCGA-XF-A9T5-01 2 190530919 190530919 G C ASNSD1 Missense_Mutation p.E21Q 0.33 tolerated(0.15) benign(0.027) TCGA-XF-A9T5-01 2 190636583 190636583 G A ORMDL1 Silent p.F124F 0.17 TCGA-XF-A9T5-01 2 191064598 191064598 G A C2orf88 Missense_Mutation p.M4I 0.36 tolerated(0.55) benign(0.009) TCGA-XF-A9T5-01 2 191839597 191839597 C T STAT1 Missense_Mutation p.E733K 0.31 tolerated(0.56) possibly_damaging(0.523) TCGA-XF-A9T5-01 2 197636626 197636626 G C GTF3C3 Silent p.L702L 0.31 TCGA-XF-A9T5-01 2 20145702 20145702 G A WDR35 Nonsense_Mutation p.R575* 0.32 TCGA-XF-A9T5-01 2 202153295 202153295 C G ALS2CR12 3'UTR 0.13 TCGA-XF-A9T5-01 2 207172245 207172245 C G ZDBF2 Nonsense_Mutation p.S998* 0.07 TCGA-XF-A9T5-01 2 217543699 217543699 C T IGFBP5 Silent p.L147L 0.19 TCGA-XF-A9T5-01 2 218762620 218762620 G C TNS1 Missense_Mutation p.I23M 0.33 deleterious(0) possibly_damaging(0.732) TCGA-XF-A9T5-01 2 230673086 230673086 C G TRIP12 Splice_Site p.X693_splice 0.29 TCGA-XF-A9T5-01 2 231775567 231775567 G C GPR55 Silent p.L37L 0.33 TCGA-XF-A9T5-01 2 234601550 234601550 C A UGT1A6 5'UTR 0.21 TCGA-XF-A9T5-01 2 234678270 234678270 G T UGT1A10 Intron 0.23 TCGA-XF-A9T5-01 2 235405199 235405199 A T ARL4C Missense_Mutation p.F11Y 0.22 tolerated(0.17) possibly_damaging(0.883) TCGA-XF-A9T5-01 2 238671731 238671731 G C LRRFIP1 Missense_Mutation p.E459Q 0.19 tolerated(0.1) benign(0.218) TCGA-XF-A9T5-01 2 241973264 241973264 C T SNED1 Missense_Mutation p.A205V 0.58 tolerated(0.5) benign(0.392) TCGA-XF-A9T5-01 2 26667639 26667639 G C DRC1 Missense_Mutation p.E407Q 0.17 deleterious(0.01) possibly_damaging(0.511) TCGA-XF-A9T5-01 2 27746144 27746144 C G GCKR Silent p.P572P 0.42 TCGA-XF-A9T5-01 2 29245120 29245120 C G FAM179A Missense_Mutation p.S486W 0.25 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T5-01 2 33787793 33787793 C T RASGRP3 Intron 0.52 TCGA-XF-A9T5-01 2 37336341 37336341 G C EIF2AK2 Nonsense_Mutation p.S492* 0.23 TCGA-XF-A9T5-01 2 38297913 38297913 G T CYP1B1 Silent p.L528L 0.33 TCGA-XF-A9T5-01 2 40655994 40655994 C G SLC8A1 Missense_Mutation p.R476T 0.26 tolerated(0.61) benign(0.074) TCGA-XF-A9T5-01 2 46378276 46378276 G A PRKCE Missense_Mutation p.D610N 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-XF-A9T5-01 2 48725807 48725807 C T PPP1R21 Missense_Mutation p.S623L 0.16 tolerated(0.32) benign(0.001) TCGA-XF-A9T5-01 2 61412688 61412688 C G AHSA2 Missense_Mutation p.L43V 0.33 deleterious(0.03) benign(0.013) TCGA-XF-A9T5-01 2 72359632 72359632 C T CYP26B1 Silent p.R421R 0.40 TCGA-XF-A9T5-01 2 73466851 73466851 C T CCT7 Silent p.C29C 0.27 TCGA-XF-A9T5-01 2 74597133 74597133 C T DCTN1 Missense_Mutation p.E451K 0.10 deleterious(0.03) probably_damaging(0.968) TCGA-XF-A9T5-01 2 74650038 74650038 C T WDR54 Silent p.L88L 0.50 TCGA-XF-A9T5-01 2 75929266 75929266 C G GCFC2 Intron 0.20 TCGA-XF-A9T5-01 2 79349240 79349240 G A REG1A Missense_Mutation p.D104N 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-XF-A9T5-01 2 86697424 86697424 C T KDM3A Silent p.I539I 0.28 TCGA-XF-A9T5-01 2 88870500 88870500 C G EIF2AK3 Silent p.V959V 0.23 TCGA-XF-A9T5-01 2 89999525 89999525 G A IGKV2D-28 Silent p.G109G 0.18 TCGA-XF-A9T5-01 2 95814970 95814970 C G ZNF514 3'UTR 0.21 TCGA-XF-A9T5-01 2 97165167 97165167 G C NEURL3 RNA 0.19 TCGA-XF-A9T5-01 2 9770303 9770303 G C YWHAQ Missense_Mutation p.I93M 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-A9T5-01 3 100948238 100948238 C G IMPG2 Missense_Mutation p.E1207Q 0.17 deleterious(0.04) benign(0.053) TCGA-XF-A9T5-01 3 101085424 101085424 T C SENP7 Missense_Mutation p.T390A 0.35 tolerated(0.71) benign(0.001) TCGA-XF-A9T5-01 3 10157357 10157357 G A BRK1 5'UTR 0.47 TCGA-XF-A9T5-01 3 105400495 105400495 T A CBLB Intron 0.12 TCGA-XF-A9T5-01 3 108276096 108276096 G C KIAA1524 Missense_Mutation p.L727V 0.11 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T5-01 3 108476090 108476090 C G RETNLB 5'UTR 0.21 TCGA-XF-A9T5-01 3 111426927 111426927 G A PLCXD2 Silent p.L106L 0.35 TCGA-XF-A9T5-01 3 113798838 113798838 C G QTRTD1 Missense_Mutation p.Q290E 0.25 tolerated(0.31) benign(0.042) TCGA-XF-A9T5-01 3 122496605 122496605 C G HSPBAP1 Missense_Mutation p.Q71H 0.16 tolerated(0.13) possibly_damaging(0.489) TCGA-XF-A9T5-01 3 122842964 122842964 G A PDIA5 Missense_Mutation p.E221K 0.23 tolerated(0.1) benign(0.11) TCGA-XF-A9T5-01 3 124149570 124149570 C T KALRN Missense_Mutation p.S924L 0.09 tolerated(0.19) benign(0.325) TCGA-XF-A9T5-01 3 126201309 126201309 G A UROC1 Missense_Mutation p.S697L 0.40 deleterious(0) probably_damaging(0.948) TCGA-XF-A9T5-01 3 128971195 128971195 C T COPG1 Silent p.L54L 0.19 TCGA-XF-A9T5-01 3 131181521 131181521 C T MRPL3 3'UTR 0.18 TCGA-XF-A9T5-01 3 132402357 132402357 G C NPHP3 Missense_Mutation p.D1194E 0.16 tolerated(0.74) benign(0.06) TCGA-XF-A9T5-01 3 136002676 136002676 C T PCCB Intron 0.24 TCGA-XF-A9T5-01 3 139195229 139195229 C A RBP2 Missense_Mutation p.D25Y 0.18 deleterious(0.01) possibly_damaging(0.856) TCGA-XF-A9T5-01 3 150459962 150459962 C T SIAH2 Missense_Mutation p.G314E 0.24 deleterious(0) possibly_damaging(0.785) TCGA-XF-A9T5-01 3 169981184 169981184 G C PRKCI Missense_Mutation p.E111Q 0.27 tolerated(0.18) probably_damaging(0.986) TCGA-XF-A9T5-01 3 174815035 174815035 G A NAALADL2 Missense_Mutation p.E167K 0.20 tolerated(0.38) benign(0.014) TCGA-XF-A9T5-01 3 179336235 179336235 C T NDUFB5 Silent p.F125F 0.25 TCGA-XF-A9T5-01 3 183774787 183774787 G A HTR3C Missense_Mutation p.D172N 0.23 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T5-01 3 186937847 186937847 G A MASP1 3'UTR 0.27 TCGA-XF-A9T5-01 3 195497090 195497090 G A MUC4 Silent p.L4465L 0.35 TCGA-XF-A9T5-01 3 31703548 31703548 C T OSBPL10 3'UTR 0.23 TCGA-XF-A9T5-01 3 32181752 32181752 C G GPD1L Silent p.L133L 0.44 TCGA-XF-A9T5-01 3 38087162 38087162 G A DLEC1 Silent p.E180E 0.57 TCGA-XF-A9T5-01 3 38622557 38622557 G A SCN5A Silent p.G1031G 0.15 TCGA-XF-A9T5-01 3 41277320 41277320 C T CTNNB1 Missense_Mutation p.P597S 0.46 deleterious(0.03) benign(0.398) TCGA-XF-A9T5-01 3 42605142 42605142 G C SEC22C Missense_Mutation p.I73M 0.50 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T5-01 3 44492001 44492001 G A ZNF445 Missense_Mutation p.S253F 0.30 tolerated(0.07) possibly_damaging(0.788) TCGA-XF-A9T5-01 3 44598444 44598444 C T ZKSCAN7 5'UTR 0.23 TCGA-XF-A9T5-01 3 48482013 48482013 G C TMA7 Silent p.A45A 0.21 TCGA-XF-A9T5-01 3 48575928 48575928 C T PFKFB4 Intron 0.19 TCGA-XF-A9T5-01 3 49055097 49055097 C A DALRD3 Nonsense_Mutation p.E223* 0.26 TCGA-XF-A9T5-01 3 51423655 51423655 G C MANF Silent p.L37L 0.52 TCGA-XF-A9T5-01 3 51967777 51967777 G A RRP9 Silent p.L427L 0.52 TCGA-XF-A9T5-01 3 58084512 58084512 G T FLNB Missense_Mutation p.D408Y 0.32 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T5-01 3 64554096 64554096 C T ADAMTS9 Missense_Mutation p.R1491K 0.35 tolerated(1) benign(0.029) TCGA-XF-A9T5-01 3 73433466 73433466 C T PDZRN3 Missense_Mutation p.D751N 0.62 deleterious(0) possibly_damaging(0.754) TCGA-XF-A9T5-01 3 78648001 78648001 C T ROBO1 3'UTR 0.35 TCGA-XF-A9T5-01 3 97664722 97664722 G C MINA Missense_Mutation p.Q387E 0.21 tolerated(1) benign(0.001) TCGA-XF-A9T5-01 3 97868907 97868907 G C OR5H14 Missense_Mutation p.L226F 0.24 tolerated(0.37) possibly_damaging(0.651) TCGA-XF-A9T5-01 3 99567156 99567156 G C FILIP1L Missense_Mutation p.R1122G 0.25 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T5-01 4 100273847 100273847 C G ADH1C 5'UTR 0.23 TCGA-XF-A9T5-01 4 100510842 100510842 G C MTTP Missense_Mutation p.E146Q 0.19 tolerated(0.88) benign(0.014) TCGA-XF-A9T5-01 4 106744227 106744227 G A GSTCD Splice_Site p.X452_splice 0.33 TCGA-XF-A9T5-01 4 110454794 110454794 G C SEC24B Missense_Mutation p.E1181Q 0.24 tolerated(0.56) benign(0.062) TCGA-XF-A9T5-01 4 111441439 111441439 C T ENPEP Silent p.N548N 0.23 TCGA-XF-A9T5-01 4 113505207 113505207 C T C4orf21 Missense_Mutation p.D1409N 0.17 deleterious(0.03) possibly_damaging(0.551) TCGA-XF-A9T5-01 4 113538703 113538703 A T C4orf21 Missense_Mutation p.L832Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 4 115856480 115856480 C G NDST4 Missense_Mutation p.R473P 0.22 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 4 121957425 121957425 G A NDNF Silent p.F567F 0.15 TCGA-XF-A9T5-01 4 1231917 1231917 C T CTBP1 Intron 0.17 TCGA-XF-A9T5-01 4 123201014 123201014 C G KIAA1109 Missense_Mutation p.F2892L 0.21 benign(0.001) TCGA-XF-A9T5-01 4 123236802 123236802 G C KIAA1109 Missense_Mutation p.D3500H 0.25 probably_damaging(0.999) TCGA-XF-A9T5-01 4 123245649 123245649 C G KIAA1109 Missense_Mutation p.S3621C 0.36 possibly_damaging(0.548) TCGA-XF-A9T5-01 4 123663257 123663257 C T BBS12 Silent p.L70L 0.22 TCGA-XF-A9T5-01 4 126371928 126371928 C T FAT4 Nonsense_Mutation p.Q3253* 0.21 TCGA-XF-A9T5-01 4 153332916 153332916 G A FBXW7 Nonsense_Mutation p.R14* 0.31 TCGA-XF-A9T5-01 4 155461192 155461192 C G PLRG1 Missense_Mutation p.R318T 0.13 deleterious(0) possibly_damaging(0.493) TCGA-XF-A9T5-01 4 16077427 16077427 C G PROM1 Missense_Mutation p.E35Q 0.44 tolerated(0.39) benign(0.223) TCGA-XF-A9T5-01 4 175443099 175443099 C T HPGD Silent p.L71L 0.16 TCGA-XF-A9T5-01 4 187130147 187130147 G A CYP4V2 Missense_Mutation p.E407K 0.19 tolerated(0.36) benign(0.026) TCGA-XF-A9T5-01 4 38933853 38933853 C T FAM114A1 Intron 0.22 TCGA-XF-A9T5-01 4 40947030 40947030 C T APBB2 Missense_Mutation p.R299K 0.14 tolerated(0.57) benign(0.001) TCGA-XF-A9T5-01 4 47427927 47427927 G C GABRB1 Missense_Mutation p.K439N 0.23 tolerated(0.11) benign(0.022) TCGA-XF-A9T5-01 4 48082185 48082185 T C TXK Intron 0.26 TCGA-XF-A9T5-01 4 68610301 68610301 G A GNRHR Missense_Mutation p.H243Y 0.29 deleterious(0.04) benign(0.173) TCGA-XF-A9T5-01 4 7043387 7043387 C A CCDC96 Nonsense_Mutation p.E427* 0.17 TCGA-XF-A9T5-01 4 71201081 71201081 G C CABS1 Missense_Mutation p.D109H 0.27 deleterious(0.01) benign(0.247) TCGA-XF-A9T5-01 4 71275661 71275661 C T PROL1 Nonsense_Mutation p.Q206* 0.13 TCGA-XF-A9T5-01 4 74318274 74318274 G A AFP Missense_Mutation p.D529N 0.16 tolerated(0.1) probably_damaging(0.938) TCGA-XF-A9T5-01 4 76452382 76452382 G C THAP6 Missense_Mutation p.W209C 0.24 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-XF-A9T5-01 4 76841076 76841076 C G NAAA Missense_Mutation p.E319Q 0.16 tolerated(0.2) benign(0.028) TCGA-XF-A9T5-01 4 79385269 79385269 C T FRAS1 Silent p.F2286F 0.17 TCGA-XF-A9T5-01 4 88766463 88766463 G C MEPE Missense_Mutation p.R148T 0.19 tolerated(0.05) probably_damaging(0.971) TCGA-XF-A9T5-01 4 95185910 95185910 G A SMARCAD1 Missense_Mutation p.C445Y 0.22 deleterious(0) benign(0.321) TCGA-XF-A9T5-01 4 96141145 96141145 C T UNC5C Missense_Mutation p.A431T 0.18 tolerated(0.38) benign(0.082) TCGA-XF-A9T5-01 5 108233505 108233505 C G FER Missense_Mutation p.P398A 0.15 tolerated(0.08) possibly_damaging(0.708) TCGA-XF-A9T5-01 5 114462184 114462184 A T TRIM36 3'UTR 0.15 TCGA-XF-A9T5-01 5 118832303 118832303 C T HSD17B4 Missense_Mutation p.H337Y 0.46 tolerated(0.14) benign(0.395) TCGA-XF-A9T5-01 5 125903970 125903970 C G ALDH7A1 Silent p.L284L 0.32 TCGA-XF-A9T5-01 5 127647616 127647616 C T FBN2 Missense_Mutation p.E1637K 0.08 deleterious(0.02) probably_damaging(0.957) TCGA-XF-A9T5-01 5 130775333 130775333 G A RAPGEF6 Missense_Mutation p.S1237F 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XF-A9T5-01 5 133478563 133478563 C T TCF7 Silent p.L303L 0.33 TCGA-XF-A9T5-01 5 133496746 133496746 C T SKP1 Missense_Mutation p.D83N 0.15 deleterious(0.05) possibly_damaging(0.605) TCGA-XF-A9T5-01 5 133496770 133496770 C T SKP1 Missense_Mutation p.D75N 0.16 tolerated(0.08) benign(0.287) TCGA-XF-A9T5-01 5 13692233 13692233 G C DNAH5 Missense_Mutation p.P4579A 0.22 possibly_damaging(0.822) TCGA-XF-A9T5-01 5 13708363 13708363 C G DNAH5 Missense_Mutation p.V4403L 0.10 benign(0.299) TCGA-XF-A9T5-01 5 137451415 137451415 G C NME5 Missense_Mutation p.N198K 0.35 deleterious(0) benign(0.367) TCGA-XF-A9T5-01 5 138266516 138266516 C G CTNNA1 Intron 0.39 TCGA-XF-A9T5-01 5 139939925 139939925 G A APBB3 Silent p.L406L 0.14 TCGA-XF-A9T5-01 5 139943432 139943432 C T APBB3 Missense_Mutation p.D40N 0.26 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 5 140214160 140214160 C T PCDHA7 Silent p.F64F 0.50 TCGA-XF-A9T5-01 5 140257196 140257196 C T PCDHA12 Silent p.L713L 0.17 TCGA-XF-A9T5-01 5 140501705 140501705 C G PCDHB4 Missense_Mutation p.S42C 0.20 deleterious_low_confidence(0.01) benign(0.233) TCGA-XF-A9T5-01 5 140537254 140537254 C T PCDHB17 Missense_Mutation p.R560C 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.508) TCGA-XF-A9T5-01 5 140573592 140573592 G A PCDHB10 Silent p.S489S 0.15 TCGA-XF-A9T5-01 5 140764092 140764092 C T PCDHGA7 Silent p.L542L 0.37 TCGA-XF-A9T5-01 5 140856490 140856490 G - PCDHGC3 Frame_Shift_Del p.D270Ifs*28 0.12 TCGA-XF-A9T5-01 5 141243787 141243787 G C PCDH1 Missense_Mutation p.I703M 0.45 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 5 14749399 14749399 C G ANKH Missense_Mutation p.R235T 0.08 tolerated(0.29) benign(0.053) TCGA-XF-A9T5-01 5 147781679 147781679 G C FBXO38 Missense_Mutation p.E133Q 0.15 tolerated(0.08) probably_damaging(0.979) TCGA-XF-A9T5-01 5 148977402 148977402 G A ARHGEF37 Missense_Mutation p.E24K 0.55 tolerated(0.26) benign(0.002) TCGA-XF-A9T5-01 5 149011679 149011679 G A ARHGEF37 Silent p.Q651Q 0.22 TCGA-XF-A9T5-01 5 149584395 149584395 C G SLC6A7 Missense_Mutation p.Q480E 0.15 tolerated(0.42) benign(0.039) TCGA-XF-A9T5-01 5 150028545 150028545 C T SYNPO Silent p.V480V 0.54 TCGA-XF-A9T5-01 5 150722535 150722535 C T SLC36A2 Silent p.K118K 0.15 TCGA-XF-A9T5-01 5 154296732 154296732 C T GEMIN5 Missense_Mutation p.E561K 0.14 deleterious(0) possibly_damaging(0.751) TCGA-XF-A9T5-01 5 154394116 154394116 C T KIF4B Missense_Mutation p.R233C 0.11 tolerated(0.05) benign(0.022) TCGA-XF-A9T5-01 5 156390220 156390220 G C TIMD4 5'UTR 0.11 TCGA-XF-A9T5-01 5 158696067 158696067 C G UBLCP1 Silent p.L48L 0.39 TCGA-XF-A9T5-01 5 159521052 159521052 G A PWWP2A Missense_Mutation p.P202L 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-XF-A9T5-01 5 162868150 162868150 G A CCNG1 Missense_Mutation p.E111K 0.19 tolerated(0.09) benign(0.107) TCGA-XF-A9T5-01 5 170148847 170148847 G A KCNIP1 Silent p.T100T 0.06 TCGA-XF-A9T5-01 5 172196596 172196596 C T DUSP1 Missense_Mutation p.E239K 0.11 deleterious(0) possibly_damaging(0.829) TCGA-XF-A9T5-01 5 179729472 179729472 A G GFPT2 Missense_Mutation p.I652T 0.14 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 5 228421 228421 G C SDHA Missense_Mutation p.R248T 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-XF-A9T5-01 5 32053920 32053920 C A PDZD2 Missense_Mutation p.Q611K 0.06 tolerated(0.06) probably_damaging(0.998) TCGA-XF-A9T5-01 5 34824390 34824390 G C RAI14 Missense_Mutation p.E818Q 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T5-01 5 34845617 34845617 C A TTC23L Missense_Mutation p.H32N 0.07 tolerated_low_confidence(0.16) benign(0.076) TCGA-XF-A9T5-01 5 35037100 35037100 G C AGXT2 Missense_Mutation p.P145A 0.26 tolerated(1) benign(0.005) TCGA-XF-A9T5-01 5 35806995 35806995 G A SPEF2 Missense_Mutation p.E1733K 0.20 tolerated(0.75) benign(0.137) TCGA-XF-A9T5-01 5 43492828 43492828 C G C5orf34 Missense_Mutation p.K493N 0.18 tolerated(0.05) benign(0.031) TCGA-XF-A9T5-01 5 45262129 45262129 A T HCN1 Missense_Mutation p.V856D 0.09 deleterious_low_confidence(0.03) benign(0.044) TCGA-XF-A9T5-01 5 5223100 5223100 C T ADAMTS16 Intron 0.38 TCGA-XF-A9T5-01 5 54720564 54720564 G C SKIV2L2 Missense_Mutation p.K1031N 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A9T5-01 5 57790721 57790721 T C GAPT Missense_Mutation p.F120L 0.19 tolerated(0.33) possibly_damaging(0.874) TCGA-XF-A9T5-01 5 63256842 63256842 C T HTR1A Silent p.K235K 0.19 TCGA-XF-A9T5-01 5 64814382 64814382 C T CENPK Missense_Mutation p.E244K 0.39 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T5-01 5 6604750 6604750 C A NSUN2 Nonsense_Mutation p.E596* 0.35 TCGA-XF-A9T5-01 5 67569779 67569779 C T PIK3R1 Missense_Mutation p.S147L 0.13 tolerated(0.18) benign(0.003) TCGA-XF-A9T5-01 5 70838038 70838038 C T BDP1 Nonsense_Mutation p.Q2120* 0.11 TCGA-XF-A9T5-01 5 70844560 70844560 C G BDP1 Missense_Mutation p.Q2266E 0.45 tolerated(0.24) benign(0.016) TCGA-XF-A9T5-01 5 74325355 74325355 C G GCNT4 Missense_Mutation p.D170H 0.21 tolerated(0.07) benign(0.409) TCGA-XF-A9T5-01 5 74865189 74865189 G A POLK Missense_Mutation p.E94K 0.24 deleterious(0) benign(0.403) TCGA-XF-A9T5-01 5 79033777 79033777 C G CMYA5 Missense_Mutation p.I3063M 0.06 probably_damaging(0.92) TCGA-XF-A9T5-01 5 79733589 79733589 C T ZFYVE16 Missense_Mutation p.S362L 0.11 tolerated(0.07) benign(0.384) TCGA-XF-A9T5-01 5 89986844 89986844 C T GPR98 Missense_Mutation p.P2313S 0.14 possibly_damaging(0.857) TCGA-XF-A9T5-01 5 94248549 94248549 C T MCTP1 Missense_Mutation p.V495M 0.07 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T5-01 5 95761557 95761557 G A PCSK1 Silent p.F121F 0.16 TCGA-XF-A9T5-01 6 100062614 100062614 C T PRDM13 Silent p.G701G 0.26 TCGA-XF-A9T5-01 6 100369086 100369086 C G MCHR2 Missense_Mutation p.K251N 0.34 deleterious(0.01) possibly_damaging(0.701) TCGA-XF-A9T5-01 6 101246631 101246631 G C ASCC3 Silent p.L451L 0.32 TCGA-XF-A9T5-01 6 10626882 10626882 G A GCNT2 3'UTR 0.80 TCGA-XF-A9T5-01 6 106554844 106554844 C G PRDM1 Missense_Mutation p.S654C 0.24 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 6 107361153 107361153 C G C6orf203 Missense_Mutation p.F68L 0.19 tolerated(0.25) benign(0.041) TCGA-XF-A9T5-01 6 117609722 117609722 G A ROS1 Missense_Mutation p.S2326F 0.36 deleterious_low_confidence(0) benign(0.001) TCGA-XF-A9T5-01 6 118880183 118880183 C G PLN Missense_Mutation p.I33M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.639) TCGA-XF-A9T5-01 6 125232217 125232217 C T RP11-510H23.1 RNA 0.45 TCGA-XF-A9T5-01 6 131602812 131602812 G A AKAP7 Silent p.V331V 0.33 TCGA-XF-A9T5-01 6 132967087 132967087 G C TAAR1 Nonsense_Mutation p.S19* 0.30 TCGA-XF-A9T5-01 6 135539184 135539184 C G MYB 3'UTR 0.20 TCGA-XF-A9T5-01 6 137519210 137519210 C T IFNGR1 Silent p.L476L 0.23 TCGA-XF-A9T5-01 6 138196146 138196146 G C TNFAIP3 Missense_Mutation p.E154Q 0.32 tolerated(0.47) benign(0.095) TCGA-XF-A9T5-01 6 144144864 144144864 C G PHACTR2 3'UTR 0.27 TCGA-XF-A9T5-01 6 146673525 146673525 G A GRM1 Missense_Mutation p.M442I 0.14 deleterious(0.02) probably_damaging(0.934) TCGA-XF-A9T5-01 6 146865208 146865208 C G RAB32 Silent p.L67L 0.30 TCGA-XF-A9T5-01 6 149900973 149900973 C T GINM1 Nonsense_Mutation p.Q145* 0.19 TCGA-XF-A9T5-01 6 150063558 150063558 C G NUP43 Missense_Mutation p.R157T 0.13 tolerated(0.07) benign(0.014) TCGA-XF-A9T5-01 6 152651200 152651200 C T SYNE1 Missense_Mutation p.E4874K 0.13 benign(0.021) TCGA-XF-A9T5-01 6 152653015 152653015 C G SYNE1 Missense_Mutation p.E4269Q 0.38 possibly_damaging(0.776) TCGA-XF-A9T5-01 6 158540090 158540090 C T SERAC1 Missense_Mutation p.E427K 0.24 tolerated(0.39) benign(0.079) TCGA-XF-A9T5-01 6 158923810 158923810 C G TULP4 Missense_Mutation p.Q1039E 0.30 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-XF-A9T5-01 6 159398603 159398603 C T RSPH3 Missense_Mutation p.M550I 0.30 tolerated_low_confidence(0.18) benign(0) TCGA-XF-A9T5-01 6 159653652 159653652 C T FNDC1 Missense_Mutation p.S703L 0.28 tolerated_low_confidence(0.13) unknown(0) TCGA-XF-A9T5-01 6 159653724 159653724 C G FNDC1 Missense_Mutation p.S727C 0.20 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9T5-01 6 160638470 160638470 C T SLC22A2 Silent p.L554L 0.09 TCGA-XF-A9T5-01 6 161807842 161807842 G T PARK2 Nonsense_Mutation p.S384* 0.29 TCGA-XF-A9T5-01 6 16254927 16254927 G A GMPR Silent p.V142V 0.55 TCGA-XF-A9T5-01 6 165715280 165715280 G T C6orf118 Silent p.L177L 0.38 TCGA-XF-A9T5-01 6 165749625 165749625 G C PDE10A Missense_Mutation p.L752V 0.41 tolerated(0.2) probably_damaging(0.97) TCGA-XF-A9T5-01 6 170697541 170697541 C T FAM120B Missense_Mutation p.S817F 0.19 deleterious(0) possibly_damaging(0.894) TCGA-XF-A9T5-01 6 24718838 24718838 C G C6orf62 Missense_Mutation p.R20T 0.58 deleterious(0.02) possibly_damaging(0.639) TCGA-XF-A9T5-01 6 27100266 27100266 C G HIST1H2BJ Silent p.S88S 0.52 TCGA-XF-A9T5-01 6 27782846 27782846 C T HIST1H2BM Missense_Mutation p.P9S 0.49 deleterious_low_confidence(0.04) benign(0.001) TCGA-XF-A9T5-01 6 31079799 31079799 C G C6orf15 Missense_Mutation p.E113Q 0.62 deleterious(0.01) possibly_damaging(0.859) TCGA-XF-A9T5-01 6 3155126 3155126 C G TUBB2A Missense_Mutation p.K103N 0.37 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-XF-A9T5-01 6 31701674 31701674 C T CLIC1 Missense_Mutation p.E72K 0.54 deleterious(0.03) benign(0.015) TCGA-XF-A9T5-01 6 31916609 31916609 C T CFB Missense_Mutation p.H849Y 0.38 deleterious(0) probably_damaging(0.919) TCGA-XF-A9T5-01 6 33284343 33284343 G A ZBTB22 Silent p.L117L 0.15 TCGA-XF-A9T5-01 6 33383784 33383784 G A PHF1 Missense_Mutation p.R538Q 0.53 tolerated(0.23) benign(0.305) TCGA-XF-A9T5-01 6 34846473 34846473 C T TAF11 Missense_Mutation p.G177E 0.14 tolerated(0.08) benign(0.348) TCGA-XF-A9T5-01 6 34846481 34846481 C G TAF11 Missense_Mutation p.E174D 0.10 deleterious(0) benign(0.129) TCGA-XF-A9T5-01 6 35261672 35261672 G A ZNF76 Missense_Mutation p.D492N 0.18 deleterious(0.03) benign(0.025) TCGA-XF-A9T5-01 6 36995303 36995303 G T FGD2 Silent p.V568V 0.33 TCGA-XF-A9T5-01 6 40360604 40360604 G C LRFN2 Nonsense_Mutation p.S483* 0.28 TCGA-XF-A9T5-01 6 41740631 41740631 C T FRS3 Missense_Mutation p.C107Y 0.24 tolerated(0.38) probably_damaging(0.949) TCGA-XF-A9T5-01 6 43316145 43316145 C G ZNF318 Missense_Mutation p.E997Q 0.27 possibly_damaging(0.877) TCGA-XF-A9T5-01 6 46663621 46663621 C G TDRD6 Nonsense_Mutation p.S2037* 0.26 TCGA-XF-A9T5-01 6 49705107 49705107 C T CRISP3 Missense_Mutation p.M24I 0.35 deleterious(0.04) possibly_damaging(0.465) TCGA-XF-A9T5-01 6 49815967 49815967 A T CRISP1 Missense_Mutation p.Y81N 0.18 tolerated(0.56) benign(0.016) TCGA-XF-A9T5-01 6 52052418 52052418 G A IL17A Silent p.L15L 0.33 TCGA-XF-A9T5-01 6 53373410 53373410 C T GCLC Missense_Mutation p.E310K 0.35 deleterious(0) probably_damaging(0.984) TCGA-XF-A9T5-01 6 62611218 62611218 G C KHDRBS2 Nonsense_Mutation p.S181* 0.23 TCGA-XF-A9T5-01 6 64394108 64394108 C G PHF3 Missense_Mutation p.S162C 0.34 deleterious(0.01) possibly_damaging(0.695) TCGA-XF-A9T5-01 6 74481203 74481203 C G CD109 Missense_Mutation p.L576V 0.15 deleterious(0) probably_damaging(0.971) TCGA-XF-A9T5-01 6 83602734 83602734 C G UBE3D 3'UTR 0.39 TCGA-XF-A9T5-01 6 84894931 84894931 G A KIAA1009 Missense_Mutation p.S546F 0.29 tolerated(0.67) benign(0.277) TCGA-XF-A9T5-01 6 86303508 86303508 C G SNX14 5'UTR 0.33 TCGA-XF-A9T5-01 6 87994324 87994324 T C GJB7 Missense_Mutation p.K103E 0.12 tolerated(0.12) benign(0.027) TCGA-XF-A9T5-01 7 100190652 100190652 A G FBXO24 Intron 0.42 TCGA-XF-A9T5-01 7 100245118 100245118 C G ACTL6B Missense_Mutation p.K236N 0.40 tolerated(0.11) possibly_damaging(0.58) TCGA-XF-A9T5-01 7 100402854 100402854 C G EPHB4 Missense_Mutation p.R923T 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 7 101845010 101845010 A T CUX1 Missense_Mutation p.K822N 0.24 deleterious(0) unknown(0) TCGA-XF-A9T5-01 7 114294155 114294155 G A FOXP2 Intron 0.08 TCGA-XF-A9T5-01 7 117171067 117171067 C G CFTR Missense_Mutation p.L130V 0.39 tolerated(0.15) benign(0.366) TCGA-XF-A9T5-01 7 121718011 121718011 G C AASS Missense_Mutation p.S848C 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-XF-A9T5-01 7 123509185 123509185 G C HYAL4 Missense_Mutation p.M286I 0.20 tolerated(0.41) benign(0.005) TCGA-XF-A9T5-01 7 128455857 128455857 G T CCDC136 Nonsense_Mutation p.E1079* 0.46 TCGA-XF-A9T5-01 7 128852289 128852289 C G SMO Missense_Mutation p.F787L 0.31 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-XF-A9T5-01 7 128852340 128852340 C G SMO 3'UTR 0.36 TCGA-XF-A9T5-01 7 129317506 129317506 C T NRF1 Missense_Mutation p.R125C 0.20 deleterious(0.02) probably_damaging(0.939) TCGA-XF-A9T5-01 7 129950684 129950684 C T CPA4 Missense_Mutation p.S284L 0.29 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T5-01 7 133842802 133842802 G A LRGUK Missense_Mutation p.E229K 0.45 deleterious(0.04) possibly_damaging(0.804) TCGA-XF-A9T5-01 7 139229046 139229046 G C CLEC2L Silent p.L201L 0.20 TCGA-XF-A9T5-01 7 139717522 139717522 C T TBXAS1 Silent p.F519F 0.21 TCGA-XF-A9T5-01 7 140380901 140380901 G C ADCK2 Missense_Mutation p.K423N 0.45 deleterious(0.02) benign(0.174) TCGA-XF-A9T5-01 7 142104180 142104180 G C TRBV6-9 Silent p.L95L 0.45 TCGA-XF-A9T5-01 7 142481247 142481247 C T PRSS3P2 RNA 0.15 TCGA-XF-A9T5-01 7 143807077 143807077 C T OR2A2 Silent p.I134I 0.14 TCGA-XF-A9T5-01 7 148809359 148809359 G A ZNF425 Silent p.I58I 0.38 TCGA-XF-A9T5-01 7 150779421 150779421 C T TMUB1 Missense_Mutation p.R77K 0.26 tolerated(0.55) probably_damaging(0.965) TCGA-XF-A9T5-01 7 151962241 151962241 G A KMT2C Nonsense_Mutation p.Q356* 0.10 TCGA-XF-A9T5-01 7 152009018 152009018 G A KMT2C Nonsense_Mutation p.Q202* 0.35 TCGA-XF-A9T5-01 7 156798481 156798481 C A MNX1 Missense_Mutation p.Q313H 0.15 tolerated(0.06) possibly_damaging(0.732) TCGA-XF-A9T5-01 7 157015987 157015987 G A UBE3C Missense_Mutation p.R681K 0.44 tolerated(0.06) possibly_damaging(0.505) TCGA-XF-A9T5-01 7 157361625 157361625 C T PTPRN2 Silent p.L957L 0.22 TCGA-XF-A9T5-01 7 20438513 20438513 G A ITGB8 Missense_Mutation p.E393K 0.30 tolerated(0.16) benign(0.297) TCGA-XF-A9T5-01 7 2752202 2752202 C T AMZ1 Missense_Mutation p.P396L 0.56 tolerated(0.33) benign(0) TCGA-XF-A9T5-01 7 2951870 2951870 C T CARD11 Missense_Mutation p.R1027Q 0.24 tolerated(0.07) possibly_damaging(0.807) TCGA-XF-A9T5-01 7 30695235 30695235 G C CRHR2 Missense_Mutation p.I365M 0.44 tolerated(0.11) probably_damaging(0.94) TCGA-XF-A9T5-01 7 31123787 31123787 G A ADCYAP1R1 Silent p.E120E 0.40 TCGA-XF-A9T5-01 7 32909745 32909745 G A KBTBD2 Missense_Mutation p.P362S 0.39 tolerated(0.29) benign(0.019) TCGA-XF-A9T5-01 7 36465636 36465636 C G ANLN Missense_Mutation p.H921D 0.15 tolerated(0.14) benign(0.032) TCGA-XF-A9T5-01 7 39730044 39730044 G A RALA Missense_Mutation p.E60K 0.17 tolerated(0.08) possibly_damaging(0.491) TCGA-XF-A9T5-01 7 39730068 39730068 G C RALA Missense_Mutation p.D68H 0.18 deleterious(0) probably_damaging(0.977) TCGA-XF-A9T5-01 7 4153045 4153045 G T SDK1 Nonsense_Mutation p.E1187* 0.39 TCGA-XF-A9T5-01 7 43548825 43548825 G C HECW1 Intron 0.33 TCGA-XF-A9T5-01 7 43679231 43679231 G A COA1 Missense_Mutation p.P131S 0.29 tolerated(0.06) probably_damaging(0.956) TCGA-XF-A9T5-01 7 44079131 44079131 G C LINC00957 RNA 0.25 TCGA-XF-A9T5-01 7 5104666 5104666 G A RBAK Missense_Mutation p.D527N 0.40 tolerated(0.42) benign(0) TCGA-XF-A9T5-01 7 56082770 56082770 C G PSPH Missense_Mutation p.K172N 0.20 tolerated(0.08) possibly_damaging(0.521) TCGA-XF-A9T5-01 7 6502618 6502618 C G KDELR2 3'UTR 0.20 TCGA-XF-A9T5-01 7 65842558 65842558 G A LINC00174 RNA 0.19 TCGA-XF-A9T5-01 7 71252775 71252775 C G CALN1 Silent p.R257R 0.26 TCGA-XF-A9T5-01 7 72081788 72081788 G C TYW1B Missense_Mutation p.L178V 0.28 deleterious(0) possibly_damaging(0.558) TCGA-XF-A9T5-01 7 72209518 72209518 G C TYW1B 3'UTR 0.35 TCGA-XF-A9T5-01 7 75104037 75104037 G A POM121C 5'UTR 0.26 TCGA-XF-A9T5-01 7 81332032 81332032 C T HGF Missense_Mutation p.M684I 0.27 tolerated(0.55) benign(0.005) TCGA-XF-A9T5-01 7 86824073 86824073 C T DMTF1 Missense_Mutation p.S701L 0.40 tolerated_low_confidence(0.12) benign(0.001) TCGA-XF-A9T5-01 7 89753522 89753522 G A RP5-1121E10.2 5'Flank 0.22 TCGA-XF-A9T5-01 7 91844062 91844062 G C KRIT1 Silent p.L531L 0.36 TCGA-XF-A9T5-01 7 939751 939751 C G ADAP1 Missense_Mutation p.K261N 0.40 deleterious(0) probably_damaging(0.92) TCGA-XF-A9T5-01 7 99381747 99381747 C T CYP3A4 5'UTR 0.29 TCGA-XF-A9T5-01 8 100883892 100883892 G C VPS13B Missense_Mutation p.Q3929H 0.32 deleterious(0.02) benign(0.216) TCGA-XF-A9T5-01 8 109247244 109247244 A G EIF3E Missense_Mutation p.Y152H 0.26 tolerated(0.1) benign(0.015) TCGA-XF-A9T5-01 8 11996025 11996025 A T USP17L2 Missense_Mutation p.L82H 0.34 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 8 121519053 121519053 C T MTBP Missense_Mutation p.S612L 0.17 tolerated(0.08) possibly_damaging(0.895) TCGA-XF-A9T5-01 8 139661983 139661983 G A COL22A1 Silent p.L1124L 0.12 TCGA-XF-A9T5-01 8 141774407 141774407 G A PTK2 Intron 0.09 TCGA-XF-A9T5-01 8 143356191 143356191 G C TSNARE1 Missense_Mutation p.S466W 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-XF-A9T5-01 8 144408499 144408499 C T TOP1MT Missense_Mutation p.E126K 0.14 tolerated(0.19) probably_damaging(0.998) TCGA-XF-A9T5-01 8 144687950 144687950 C G PYCRL Missense_Mutation p.E261Q 0.39 deleterious(0) probably_damaging(0.971) TCGA-XF-A9T5-01 8 145622831 145622831 G C CPSF1 Silent p.G752G 0.11 TCGA-XF-A9T5-01 8 145659483 145659483 C T TONSL Missense_Mutation p.E1089K 0.20 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T5-01 8 145667657 145667657 G A TONSL Silent p.F239F 0.27 TCGA-XF-A9T5-01 8 145692637 145692637 C T KIFC2 Silent p.L128L 0.15 TCGA-XF-A9T5-01 8 145746173 145746173 C A LRRC14 Missense_Mutation p.S294Y 0.15 deleterious(0) probably_damaging(0.954) TCGA-XF-A9T5-01 8 145746182 145746182 C T LRRC14 Missense_Mutation p.S297L 0.16 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T5-01 8 145746334 145746334 C G LRRC14 Missense_Mutation p.F318L 0.15 deleterious(0.01) possibly_damaging(0.845) TCGA-XF-A9T5-01 8 145947523 145947523 G A ZNF251 Nonsense_Mutation p.Q508* 0.17 TCGA-XF-A9T5-01 8 22006247 22006247 C T LGI3 Missense_Mutation p.R358H 0.36 deleterious(0.03) probably_damaging(0.963) TCGA-XF-A9T5-01 8 22865265 22865265 G A RHOBTB2 Intron 0.45 TCGA-XF-A9T5-01 8 23177535 23177535 C T LOXL2 Missense_Mutation p.E445K 0.28 deleterious(0) probably_damaging(0.994) TCGA-XF-A9T5-01 8 37672480 37672480 G C GPR124 Missense_Mutation p.E111D 0.10 tolerated(0.06) benign(0.168) TCGA-XF-A9T5-01 8 38133960 38133960 C T WHSC1L1 Missense_Mutation p.R1309K 0.05 tolerated(1) benign(0) TCGA-XF-A9T5-01 8 38699938 38699938 G A TACC1 Silent p.L698L 0.07 TCGA-XF-A9T5-01 8 48320493 48320493 C T SPIDR Nonsense_Mutation p.Q283* 0.37 TCGA-XF-A9T5-01 8 48801778 48801778 C T PRKDC Silent p.L1358L 0.40 TCGA-XF-A9T5-01 8 52366133 52366133 G A PXDNL Missense_Mutation p.H399Y 0.16 tolerated(1) benign(0.326) TCGA-XF-A9T5-01 8 52366134 52366134 A T PXDNL Nonsense_Mutation p.C398* 0.16 TCGA-XF-A9T5-01 8 53030927 53030927 C T ST18 Missense_Mutation p.E944K 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T5-01 8 53555081 53555081 G A RB1CC1 Silent p.V1389V 0.19 TCGA-XF-A9T5-01 8 63927922 63927922 G C GGH Missense_Mutation p.S309C 0.12 deleterious(0.01) benign(0.348) TCGA-XF-A9T5-01 8 68145142 68145142 G A ARFGEF1 Nonsense_Mutation p.Q1110* 0.13 TCGA-XF-A9T5-01 8 69058566 69058566 C T PREX2 Missense_Mutation p.H1404Y 0.15 tolerated(0.3) benign(0) TCGA-XF-A9T5-01 8 73849865 73849865 G A KCNB2 Missense_Mutation p.E759K 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.61) TCGA-XF-A9T5-01 8 79514133 79514133 G C PKIA 3'UTR 0.62 TCGA-XF-A9T5-01 8 79610720 79610720 C G ZC2HC1A Missense_Mutation p.H226D 0.35 deleterious(0.04) possibly_damaging(0.552) TCGA-XF-A9T5-01 8 82627241 82627241 C T ZFAND1 Missense_Mutation p.E83K 0.12 tolerated(0.13) benign(0.02) TCGA-XF-A9T5-01 8 88885074 88885074 G A DCAF4L2 Nonsense_Mutation p.R376* 0.22 TCGA-XF-A9T5-01 8 90775058 90775058 G A RIPK2 Missense_Mutation p.E59K 0.19 deleterious(0) probably_damaging(0.967) TCGA-XF-A9T5-01 8 90784894 90784894 G T RIPK2 Splice_Site p.X231_splice 0.28 TCGA-XF-A9T5-01 8 92352680 92352680 C T SLC26A7 Silent p.I309I 0.14 TCGA-XF-A9T5-01 8 98703312 98703312 G C MTDH Missense_Mutation p.R315T 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-XF-A9T5-01 9 100353572 100353572 G C TMOD1 Splice_Site p.X291_splice 0.61 TCGA-XF-A9T5-01 9 113233660 113233660 C G SVEP1 Silent p.L994L 0.50 TCGA-XF-A9T5-01 9 114296573 114296573 C T ZNF483 Nonsense_Mutation p.Q221* 0.44 TCGA-XF-A9T5-01 9 114305524 114305524 C G ZNF483 3'UTR 0.35 TCGA-XF-A9T5-01 9 125673161 125673161 G A ZBTB6 Silent p.L397L 0.13 TCGA-XF-A9T5-01 9 127652731 127652731 C G GOLGA1 Silent p.V478V 0.54 TCGA-XF-A9T5-01 9 127999200 127999200 C T HSPA5 Missense_Mutation p.E546K 0.34 deleterious_low_confidence(0.03) benign(0.223) TCGA-XF-A9T5-01 9 129596181 129596181 G C ZBTB43 Missense_Mutation p.E465Q 0.56 deleterious_low_confidence(0.04) benign(0.01) TCGA-XF-A9T5-01 9 130925761 130925761 C G C9orf16 Missense_Mutation p.S40C 0.14 deleterious(0.04) benign(0.018) TCGA-XF-A9T5-01 9 131456069 131456069 C G SET Missense_Mutation p.N228K 0.15 deleterious(0.01) probably_damaging(0.946) TCGA-XF-A9T5-01 9 13223669 13223669 G C MPDZ Missense_Mutation p.S145C 0.25 tolerated(0.35) benign(0.003) TCGA-XF-A9T5-01 9 138594072 138594072 C T KCNT1 5'UTR 0.31 TCGA-XF-A9T5-01 9 138677162 138677162 G A KCNT1 Missense_Mutation p.D1055N 0.61 tolerated_low_confidence(0.13) benign(0.001) TCGA-XF-A9T5-01 9 140051322 140051322 C T GRIN1 Silent p.L288L 0.69 TCGA-XF-A9T5-01 9 140109118 140109118 C G NDOR1 Silent p.L273L 0.63 TCGA-XF-A9T5-01 9 140110130 140110130 C T NDOR1 Silent p.L436L 0.63 TCGA-XF-A9T5-01 9 15510157 15510157 G A PSIP1 Silent p.L10L 0.37 TCGA-XF-A9T5-01 9 21367494 21367494 G A IFNA13 Silent p.I172I 0.39 TCGA-XF-A9T5-01 9 27296677 27296677 C T EQTN Missense_Mutation p.D46N 0.55 tolerated(0.21) benign(0.004) TCGA-XF-A9T5-01 9 32542637 32542637 G T TOPORS Missense_Mutation p.S629Y 0.20 deleterious(0.01) unknown(0) TCGA-XF-A9T5-01 9 3288251 3288251 C G RFX3 Splice_Site p.X244_splice 0.39 TCGA-XF-A9T5-01 9 33318947 33318947 C T NFX1 Silent p.C576C 0.12 TCGA-XF-A9T5-01 9 34257661 34257661 C T KIF24 Silent p.V648V 0.33 TCGA-XF-A9T5-01 9 35044715 35044715 G C C9orf131 Missense_Mutation p.E697Q 0.65 tolerated(0.07) benign(0.359) TCGA-XF-A9T5-01 9 35609203 35609203 G A TESK1 Missense_Mutation p.E449K 0.47 tolerated(0.48) benign(0.444) TCGA-XF-A9T5-01 9 35853728 35853728 C G TMEM8B Missense_Mutation p.S437C 0.42 tolerated(0.08) benign(0.206) TCGA-XF-A9T5-01 9 5462850 5462850 C G CD274 Missense_Mutation p.I137M 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T5-01 9 5968409 5968409 C A KIAA2026 Missense_Mutation p.G608C 0.15 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T5-01 9 79438636 79438636 C G PRUNE2 Missense_Mutation p.S223T 0.13 deleterious(0.04) benign(0.344) TCGA-XF-A9T5-01 X 102529333 102529333 C A TCEAL5 Missense_Mutation p.K53N 0.36 tolerated(0.06) probably_damaging(0.969) TCGA-XF-A9T5-01 X 102529347 102529347 C T TCEAL5 Missense_Mutation p.E49K 0.38 tolerated(0.22) benign(0.013) TCGA-XF-A9T5-01 X 10427877 10427877 C G MID1 Intron 0.28 TCGA-XF-A9T5-01 X 104984665 104984665 T C IL1RAPL2 Silent p.S343S 0.28 TCGA-XF-A9T5-01 X 106846316 106846316 G A FRMPD3 Missense_Mutation p.E1716K 0.21 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T5-01 X 12904976 12904976 C T TLR7 Missense_Mutation p.T450I 0.12 tolerated(0.31) benign(0.006) TCGA-XF-A9T5-01 X 129150099 129150099 G C BCORL1 Missense_Mutation p.K1117N 0.48 possibly_damaging(0.848) TCGA-XF-A9T5-01 X 14708975 14708975 G A GLRA2 Silent p.Q358Q 0.23 TCGA-XF-A9T5-01 X 148568538 148568538 C A IDS Missense_Mutation p.R155S 0.17 tolerated(0.11) benign(0.065) TCGA-XF-A9T5-01 X 14891647 14891647 G A MOSPD2 5'UTR 0.29 TCGA-XF-A9T5-01 X 150891136 150891136 G A FATE1 Missense_Mutation p.E153K 0.25 deleterious(0.01) benign(0.412) TCGA-XF-A9T5-01 X 154159709 154159709 C G F8 Missense_Mutation p.E786Q 0.49 deleterious(0.05) benign(0.053) TCGA-XF-A9T5-01 X 18342046 18342046 G C SCML2 Silent p.V110V 0.31 TCGA-XF-A9T5-01 X 19017391 19017391 C G GPR64 Missense_Mutation p.W779C 0.23 deleterious(0) probably_damaging(1) TCGA-XF-A9T5-01 X 22051055 22051055 C A PHEX 5'UTR 0.31 TCGA-XF-A9T5-01 X 39932603 39932603 T A BCOR Missense_Mutation p.I666F 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-XF-A9T5-01 X 41204656 41204656 G C DDX3X Splice_Site p.X391_splice 0.31 TCGA-XF-A9T5-01 X 41206929 41206929 G A DDX3X Missense_Mutation p.G649E 0.23 deleterious(0.01) unknown(0) TCGA-XF-A9T5-01 X 47307653 47307653 G C ZNF41 Missense_Mutation p.H506D 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A9T5-01 X 53602710 53602710 C G HUWE1 Missense_Mutation p.E1975Q 0.33 benign(0.424) TCGA-XF-A9T5-01 X 54275657 54275657 G C WNK3 Missense_Mutation p.Q1042E 0.12 tolerated_low_confidence(0.13) benign(0.021) TCGA-XF-A9T5-01 X 54275687 54275687 G C WNK3 Missense_Mutation p.L1032V 0.16 tolerated_low_confidence(0.74) benign(0.001) TCGA-XF-A9T5-01 X 65242618 65242618 C T VSIG4 Intron 0.41 TCGA-XF-A9T5-01 X 73063385 73063385 G C XIST RNA 0.52 TCGA-XF-A9T5-01 X 73070037 73070037 G T XIST RNA 0.53 TCGA-XF-A9T5-01 X 77264601 77264601 G C ATP7A Silent p.V570V 0.40 TCGA-XF-A9T5-01 X 99551336 99551336 A T PCDH19 Missense_Mutation p.L1129Q 0.13 deleterious_low_confidence(0) benign(0.318) TCGA-XF-A9T6-01 10 101478222 101478222 A G COX15 Missense_Mutation p.Y290H 0.36 deleterious(0.03) possibly_damaging(0.739) TCGA-XF-A9T6-01 10 121341722 121341722 T C TIAL1 Missense_Mutation p.N98S 0.41 deleterious(0.01) benign(0.296) TCGA-XF-A9T6-01 10 123846088 123846088 G A TACC2 Missense_Mutation p.S1358N 0.57 benign(0.424) TCGA-XF-A9T6-01 10 128974182 128974182 G A FAM196A Missense_Mutation p.R160W 0.38 deleterious(0.01) possibly_damaging(0.857) TCGA-XF-A9T6-01 10 129347635 129347635 G A NPS Translation_Start_Site p.M1? 0.44 deleterious(0.02) benign(0.013) TCGA-XF-A9T6-01 10 129910297 129910297 C T MKI67 Nonsense_Mutation p.W661* 0.38 TCGA-XF-A9T6-01 10 25304827 25304827 G A ENKUR Silent p.L13L 0.41 TCGA-XF-A9T6-01 10 30747018 30747018 C T MAP3K8 Silent p.Y293Y 0.42 TCGA-XF-A9T6-01 10 35896812 35896812 G A GJD4 Missense_Mutation p.C124Y 0.50 tolerated(0.14) benign(0.019) TCGA-XF-A9T6-01 10 37418870 37418877 TTTCTGGT - ANKRD30A Frame_Shift_Del p.F35Rfs*7 0.43 TCGA-XF-A9T6-01 10 38406692 38406692 T C ZNF37A Missense_Mutation p.C205R 0.38 deleterious(0.01) benign(0.372) TCGA-XF-A9T6-01 10 46245607 46245607 G A FAM21C Missense_Mutation p.E266K 0.33 tolerated(0.29) probably_damaging(0.99) TCGA-XF-A9T6-01 10 51994204 51994204 G T ASAH2 Missense_Mutation p.P266T 0.85 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 10 5963400 5963416 TCTCCCTAAAGGTGGCA - FBXO18 Splice_Site p.X785_splice 0.53 TCGA-XF-A9T6-01 10 63212755 63212755 C T TMEM26 Missense_Mutation p.E29K 0.48 tolerated(0.81) benign(0.254) TCGA-XF-A9T6-01 10 68687865 68687865 G A LRRTM3 Silent p.P397P 0.41 TCGA-XF-A9T6-01 10 69672726 69672726 G A SIRT1 Missense_Mutation p.G618E 0.50 tolerated(1) benign(0) TCGA-XF-A9T6-01 10 70333766 70333766 C T TET1 Silent p.V557V 0.39 TCGA-XF-A9T6-01 10 71176060 71176060 A G TACR2 Missense_Mutation p.V7A 0.36 tolerated_low_confidence(0.44) benign(0.002) TCGA-XF-A9T6-01 10 73591673 73591673 G A PSAP Missense_Mutation p.S60F 0.42 deleterious(0) probably_damaging(0.981) TCGA-XF-A9T6-01 10 88439911 88439911 G A LDB3 Silent p.Q106Q 0.41 TCGA-XF-A9T6-01 10 91404997 91404997 A G PANK1 Silent p.S21S 0.58 TCGA-XF-A9T6-01 10 98336510 98336510 T C TM9SF3 Missense_Mutation p.Y60C 0.39 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 10 99661304 99661304 G A CRTAC1 Silent p.F363F 0.29 TCGA-XF-A9T6-01 11 108385098 108385098 G A EXPH5 Missense_Mutation p.S379F 0.64 tolerated(0.07) benign(0.044) TCGA-XF-A9T6-01 11 108547868 108547868 C T DDX10 Silent p.L145L 0.67 TCGA-XF-A9T6-01 11 117299201 117299201 G T DSCAML1 Missense_Mutation p.A2062D 1.00 deleterious_low_confidence(0.02) benign(0.051) TCGA-XF-A9T6-01 11 122738808 122738808 G A CRTAM Splice_Site p.X351_splice 0.81 TCGA-XF-A9T6-01 11 12399181 12399193 GCCTGCGCCGCGC - PARVA Frame_Shift_Del p.S36Tfs*55 0.41 TCGA-XF-A9T6-01 11 3733848 3733848 G C NUP98 Missense_Mutation p.S896R 0.65 tolerated(0.52) benign(0.097) TCGA-XF-A9T6-01 11 5153844 5153844 A G OR52A5 Missense_Mutation p.M10T 0.73 tolerated(0.65) benign(0.006) TCGA-XF-A9T6-01 11 57947382 57947382 G A OR9Q1 Missense_Mutation p.A156T 0.39 tolerated(0.07) possibly_damaging(0.58) TCGA-XF-A9T6-01 11 62389409 62389409 T G B3GAT3 Missense_Mutation p.K4T 0.15 deleterious(0.01) possibly_damaging(0.469) TCGA-XF-A9T6-01 11 63449152 63449152 C G RTN3 Missense_Mutation p.S15W 0.08 deleterious_low_confidence(0) unknown(0) TCGA-XF-A9T6-01 11 63656362 63656362 C T MARK2 Intron 0.79 TCGA-XF-A9T6-01 11 65269391 65269391 T C MALAT1 RNA 0.31 TCGA-XF-A9T6-01 11 70031760 70031760 G A ANO1 Missense_Mutation p.A885T 0.21 tolerated(0.65) benign(0.349) TCGA-XF-A9T6-01 11 702998 702998 C G TMEM80 Missense_Mutation p.L119V 0.53 tolerated(0.1) probably_damaging(0.958) TCGA-XF-A9T6-01 11 71724090 71724090 C T NUMA1 Missense_Mutation p.A1487T 0.31 probably_damaging(0.999) TCGA-XF-A9T6-01 11 74617440 74617440 G A XRRA1 Nonsense_Mutation p.Q275* 0.67 TCGA-XF-A9T6-01 11 77934533 77934533 C T GAB2 Missense_Mutation p.V498M 0.61 tolerated(0.12) benign(0.001) TCGA-XF-A9T6-01 11 83674057 83674057 G A DLG2 Missense_Mutation p.P404L 0.43 tolerated(0.11) possibly_damaging(0.763) TCGA-XF-A9T6-01 11 89880588 89880588 A G NAALAD2 Silent p.L95L 0.35 TCGA-XF-A9T6-01 12 104697733 104697733 G A EID3 Silent p.V7V 0.45 TCGA-XF-A9T6-01 12 108079583 108079592 CTGTGCAGAT - PWP1 5'UTR 0.35 TCGA-XF-A9T6-01 12 109536302 109536302 G A UNG Silent p.L66L 0.59 TCGA-XF-A9T6-01 12 116429724 116429724 T C MED13L Missense_Mutation p.Y1012C 0.32 deleterious(0) unknown(0) TCGA-XF-A9T6-01 12 121151140 121151140 A G UNC119B Missense_Mutation p.D103G 0.33 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 12 122745840 122745840 G A VPS33A Missense_Mutation p.L151F 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-XF-A9T6-01 12 123187862 123187862 C T HCAR2 5'UTR 0.39 TCGA-XF-A9T6-01 12 124179815 124179815 G A TCTN2 Missense_Mutation p.G428D 0.32 tolerated(0.34) benign(0.049) TCGA-XF-A9T6-01 12 125449082 125449082 C T DHX37 Missense_Mutation p.V635M 0.49 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T6-01 12 1995157 1995157 C T CACNA2D4 Missense_Mutation p.V348I 0.20 deleterious(0) possibly_damaging(0.757) TCGA-XF-A9T6-01 12 2224519 2224519 G A CACNA1C Missense_Mutation p.R60Q 0.23 tolerated_low_confidence(0.11) benign(0.366) TCGA-XF-A9T6-01 12 498104 498104 G A KDM5A Missense_Mutation p.R52W 0.42 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 12 52773657 52773657 T C KRT84 Intron 0.29 TCGA-XF-A9T6-01 12 53207919 53207919 C T KRT4 5'UTR 0.40 TCGA-XF-A9T6-01 12 56720454 56720454 G A PAN2 Silent p.T403T 0.48 TCGA-XF-A9T6-01 12 6426766 6426766 C T PLEKHG6 Silent p.I307I 0.45 TCGA-XF-A9T6-01 12 67686427 67686427 A G CAND1 Missense_Mutation p.K80E 0.39 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T6-01 12 76742022 76742022 C T BBS10 Silent p.T39T 0.70 TCGA-XF-A9T6-01 12 80707342 80707342 T G OTOGL Missense_Mutation p.S1170R 0.78 deleterious(0) possibly_damaging(0.811) TCGA-XF-A9T6-01 12 81624890 81624890 C T ACSS3 Silent p.F523F 0.76 TCGA-XF-A9T6-01 12 9232356 9232356 A C A2M Nonsense_Mutation p.Y970* 0.53 TCGA-XF-A9T6-01 12 93174083 93174083 G A EEA1 Silent p.L1147L 0.43 TCGA-XF-A9T6-01 12 95603086 95603087 GG - FGD6 Frame_Shift_Del p.T658Nfs*13 0.38 TCGA-XF-A9T6-01 13 113202484 113202484 A - TUBGCP3 Frame_Shift_Del p.C325Vfs*24 0.35 TCGA-XF-A9T6-01 13 48953729 48953729 G A RB1 Splice_Site p.X445_splice 0.60 TCGA-XF-A9T6-01 13 99489837 99489837 G A DOCK9 Silent p.L1386L 0.53 TCGA-XF-A9T6-01 14 100135203 100135203 C T HHIPL1 Intron 0.46 TCGA-XF-A9T6-01 14 105174267 105174267 C T INF2 Missense_Mutation p.R555W 0.33 deleterious(0) unknown(0) TCGA-XF-A9T6-01 14 106405821 106405821 G T IGHV6-1 Missense_Mutation p.S51R 0.37 deleterious(0) benign(0.09) TCGA-XF-A9T6-01 14 20837625 20837625 G C TEP1 Missense_Mutation p.P2512A 0.18 tolerated(0.16) benign(0.293) TCGA-XF-A9T6-01 14 22111201 22111201 A T TRAV1-2 Silent p.G3G 0.17 TCGA-XF-A9T6-01 14 24738893 24738893 G A RABGGTA Silent p.C145C 0.50 TCGA-XF-A9T6-01 14 31570424 31570424 G A HECTD1 Silent p.L2553L 0.39 TCGA-XF-A9T6-01 14 35497301 35497301 C T SRP54 Silent p.D445D 0.29 TCGA-XF-A9T6-01 14 39649877 39649877 A G PNN Missense_Mutation p.T322A 0.42 deleterious_low_confidence(0.03) benign(0.144) TCGA-XF-A9T6-01 14 55169419 55169419 G A SAMD4A Intron 0.31 TCGA-XF-A9T6-01 14 64691243 64691243 C T SYNE2 Missense_Mutation p.S6816F 0.40 benign(0.012) TCGA-XF-A9T6-01 14 69256983 69256983 C A ZFP36L1 Missense_Mutation p.G95V 0.45 deleterious(0) benign(0.445) TCGA-XF-A9T6-01 14 73739488 73739488 A T PAPLN 3'UTR 0.29 TCGA-XF-A9T6-01 14 74062178 74062178 C G ACOT4 Missense_Mutation p.I362M 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A9T6-01 14 75748065 75748066 - GCA FOS In_Frame_Ins p.S364dup 0.36 TCGA-XF-A9T6-01 14 77705803 77705803 C T TMEM63C Silent p.D258D 0.33 TCGA-XF-A9T6-01 15 101445848 101445848 G T ALDH1A3 Missense_Mutation p.V397F 0.51 deleterious(0.01) benign(0.055) TCGA-XF-A9T6-01 15 101938743 101938743 C T PCSK6 Missense_Mutation p.E287K 0.46 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 15 28230225 28230225 G A OCA2 Missense_Mutation p.T450M 0.44 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 15 31340143 31340143 C T TRPM1 Splice_Site p.X542_splice 0.45 TCGA-XF-A9T6-01 15 34640830 34640830 G A NUTM1 Missense_Mutation p.R226K 0.47 tolerated(0.07) benign(0.12) TCGA-XF-A9T6-01 15 38233870 38233870 A T TMCO5A Splice_Site p.X149_splice 0.31 TCGA-XF-A9T6-01 15 41689047 41689047 T C NDUFAF1 Missense_Mutation p.I71V 0.35 tolerated_low_confidence(0.64) benign(0.001) TCGA-XF-A9T6-01 15 42058405 42058405 G T MGA Missense_Mutation p.G2709C 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.841) TCGA-XF-A9T6-01 15 42059146 42059146 G T MGA Missense_Mutation p.A2956S 0.41 tolerated_low_confidence(0.11) benign(0.066) TCGA-XF-A9T6-01 15 48760642 48760642 A G FBN1 Missense_Mutation p.F1517L 0.43 probably_damaging(0.923) TCGA-XF-A9T6-01 15 50773678 50773678 A T USP8 Missense_Mutation p.I407F 0.50 tolerated(0.56) benign(0.001) TCGA-XF-A9T6-01 15 51350513 51350513 G A TNFAIP8L3 Silent p.L148L 0.33 TCGA-XF-A9T6-01 15 72637878 72637878 C G HEXA Missense_Mutation p.A479P 0.65 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T6-01 15 72637895 72637895 G A HEXA Intron 0.60 TCGA-XF-A9T6-01 15 73862522 73862522 C T NPTN Silent p.E361E 0.40 TCGA-XF-A9T6-01 15 76629152 76629152 G A ISL2 5'UTR 0.41 TCGA-XF-A9T6-01 15 78782821 78782821 G A IREB2 Missense_Mutation p.D712N 0.48 tolerated(0.18) benign(0.059) TCGA-XF-A9T6-01 15 92690341 92690341 G A SLCO3A1 Missense_Mutation p.S547N 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-XF-A9T6-01 15 93486053 93486076 TGTACTTAATCCTTTTGCAGCCAC - CHD2 Splice_Site p.X276_splice 0.41 TCGA-XF-A9T6-01 16 11145496 11145496 C T CLEC16A Missense_Mutation p.R665W 0.29 deleterious(0) possibly_damaging(0.899) TCGA-XF-A9T6-01 16 2100464 2100464 G A TSC2 Missense_Mutation p.A68T 0.10 deleterious(0.01) possibly_damaging(0.804) TCGA-XF-A9T6-01 16 23392280 23392280 G C SCNN1B 3'UTR 0.42 TCGA-XF-A9T6-01 16 2498903 2498903 C T CCNF Missense_Mutation p.T381M 0.71 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 16 27517274 27517274 G C GTF3C1 Missense_Mutation p.D572E 0.34 tolerated(0.89) benign(0.003) TCGA-XF-A9T6-01 16 30123662 30123662 C T GDPD3 Missense_Mutation p.E150K 0.40 deleterious(0.01) probably_damaging(1) TCGA-XF-A9T6-01 16 30456428 30456428 C T SEPHS2 Silent p.G207G 0.40 TCGA-XF-A9T6-01 16 31435476 31435476 A G ITGAD Silent p.T1071T 0.37 TCGA-XF-A9T6-01 16 32893931 32893931 C A RP11-989E6.3 5'Flank 0.19 TCGA-XF-A9T6-01 16 4524102 4524102 C T NMRAL1 Missense_Mutation p.G11E 0.58 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T6-01 16 48226615 48226615 C G ABCC11 Missense_Mutation p.R841P 0.27 tolerated(0.61) benign(0.007) TCGA-XF-A9T6-01 16 58538083 58538083 C A NDRG4 Missense_Mutation p.F103L 0.48 deleterious(0.03) probably_damaging(0.989) TCGA-XF-A9T6-01 16 732767 732767 G A JMJD8 3'UTR 0.33 TCGA-XF-A9T6-01 16 89789220 89789220 G A ZNF276 Missense_Mutation p.G163S 0.33 tolerated(0.07) benign(0.043) TCGA-XF-A9T6-01 16 89831451 89831451 C T FANCA Silent p.L875L 0.54 TCGA-XF-A9T6-01 17 10543902 10543902 T A MYH3 Missense_Mutation p.Q756L 0.32 deleterious(0.02) probably_damaging(0.95) TCGA-XF-A9T6-01 17 12883488 12883488 C T ARHGAP44 Missense_Mutation p.P626L 0.74 tolerated_low_confidence(0.46) unknown(0) TCGA-XF-A9T6-01 17 16455431 16455431 G A ZNF287 Silent p.P675P 0.39 TCGA-XF-A9T6-01 17 17117046 17117046 T C FLCN Missense_Mutation p.T555A 0.33 deleterious(0.01) benign(0.306) TCGA-XF-A9T6-01 17 33902844 33902844 G T PEX12 Missense_Mutation p.T346K 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9T6-01 17 35913502 35913502 C A SYNRG Missense_Mutation p.D775Y 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9T6-01 17 37618616 37618616 G A CDK12 Missense_Mutation p.E98K 0.26 unknown(0) TCGA-XF-A9T6-01 17 41215388 41215388 C T BRCA1 Missense_Mutation p.V1740M 0.23 deleterious(0) probably_damaging(0.975) TCGA-XF-A9T6-01 17 41613836 41613836 C T ETV4 Missense_Mutation p.D72N 0.38 deleterious(0) probably_damaging(0.927) TCGA-XF-A9T6-01 17 41721003 41721003 C T MEOX1 Silent p.P165P 0.65 TCGA-XF-A9T6-01 17 42248268 42248268 G A ASB16 Silent p.R37R 0.36 TCGA-XF-A9T6-01 17 42274363 42274363 C T ATXN7L3 Missense_Mutation p.E130K 0.40 tolerated(0.09) benign(0.122) TCGA-XF-A9T6-01 17 43190854 43190854 A G PLCD3 Missense_Mutation p.F649L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T6-01 17 45669371 45669371 C T NPEPPS Missense_Mutation p.S437L 0.30 deleterious(0) probably_damaging(0.981) TCGA-XF-A9T6-01 17 54526477 54526477 G A ANKFN1 Silent p.K382K 0.40 TCGA-XF-A9T6-01 17 56288375 56288375 T G MKS1 Silent p.P308P 0.19 TCGA-XF-A9T6-01 17 56387976 56387976 C T BZRAP1 Missense_Mutation p.C1199Y 0.42 tolerated(0.22) benign(0.025) TCGA-XF-A9T6-01 17 56621633 56621633 C A C17orf47 5'UTR 0.41 TCGA-XF-A9T6-01 17 62856347 62856347 C G LRRC37A3 Missense_Mutation p.R1306P 0.26 tolerated(0.17) possibly_damaging(0.664) TCGA-XF-A9T6-01 17 63185417 63185417 T C RGS9 Missense_Mutation p.V223A 0.33 tolerated(0.17) benign(0.004) TCGA-XF-A9T6-01 17 64738764 64738764 G C PRKCA Missense_Mutation p.M470I 0.13 deleterious(0.01) benign(0.254) TCGA-XF-A9T6-01 17 67108393 67108393 T G ABCA6 Missense_Mutation p.N688T 0.25 deleterious(0.04) benign(0.434) TCGA-XF-A9T6-01 17 67114041 67114041 T G ABCA6 Missense_Mutation p.K498T 0.55 deleterious(0) possibly_damaging(0.889) TCGA-XF-A9T6-01 17 7213108 7213108 G A EIF5A Missense_Mutation p.G82S 0.32 deleterious(0) probably_damaging(0.967) TCGA-XF-A9T6-01 17 7230224 7230224 C G NEURL4 Missense_Mutation p.G300R 0.29 tolerated(0.16) benign(0.121) TCGA-XF-A9T6-01 17 73975202 73975202 G A ACOX1 5'UTR 0.21 TCGA-XF-A9T6-01 17 74901303 74901303 A G MGAT5B Missense_Mutation p.K259R 0.43 tolerated(0.31) benign(0.037) TCGA-XF-A9T6-01 17 7577144 7577144 A G TP53 Missense_Mutation p.L265P 0.29 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 17 7578430 7578448 TGTGACTGCTTGTAGATGG - TP53 Frame_Shift_Del p.A161Gfs*3 0.18 TCGA-XF-A9T6-01 17 76122677 76122677 G C TMC6 Missense_Mutation p.L37V 0.54 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T6-01 17 76698298 76698298 C T CYTH1 Missense_Mutation p.D88N 0.28 tolerated(0.75) benign(0) TCGA-XF-A9T6-01 17 78272305 78272305 C A RNF213 Missense_Mutation p.Q733K 0.50 benign(0) TCGA-XF-A9T6-01 18 20936611 20936611 G A TMEM241 Silent p.V206V 0.41 TCGA-XF-A9T6-01 18 64172435 64172435 C T CDH19 Missense_Mutation p.G645R 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 18 7043285 7043285 G A LAMA1 Nonsense_Mutation p.Q366* 0.38 TCGA-XF-A9T6-01 19 10909184 10909184 G C DNM2 Missense_Mutation p.R453P 0.37 deleterious(0.01) benign(0.201) TCGA-XF-A9T6-01 19 18288576 18288576 T A IFI30 Splice_Site p.X230_splice 0.38 TCGA-XF-A9T6-01 19 18942997 18942997 G A UPF1 5'UTR 0.90 TCGA-XF-A9T6-01 19 22586237 22586237 A G ZNF98 Silent p.N36N 0.59 TCGA-XF-A9T6-01 19 29698799 29698799 C T UQCRFS1 Missense_Mutation p.E161K 0.60 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 19 3937251 3937251 T C NMRK2 Missense_Mutation p.I44T 0.65 deleterious(0.04) possibly_damaging(0.6) TCGA-XF-A9T6-01 19 44417460 44417460 C T ZNF45 3'UTR 0.65 TCGA-XF-A9T6-01 19 4446144 4446144 C T UBXN6 Missense_Mutation p.E368K 0.80 deleterious(0.01) probably_damaging(0.952) TCGA-XF-A9T6-01 19 46915418 46915418 G A CCDC8 Missense_Mutation p.A217V 0.75 benign(0.004) TCGA-XF-A9T6-01 19 49437043 49437043 A G DHDH Missense_Mutation p.Q22R 0.85 tolerated(0.61) benign(0) TCGA-XF-A9T6-01 19 51323489 51323489 G A KLK1 Silent p.V139V 0.57 TCGA-XF-A9T6-01 19 53057057 53057057 C T ZNF808 Silent p.F296F 0.72 TCGA-XF-A9T6-01 19 54600295 54600295 C G OSCAR Missense_Mutation p.R80P 0.74 tolerated(0.07) benign(0.019) TCGA-XF-A9T6-01 19 9015371 9015371 G T MUC16 Missense_Mutation p.F12739L 0.68 possibly_damaging(0.822) TCGA-XF-A9T6-01 19 9801226 9801226 G A ZNF812 Missense_Mutation p.T318M 0.77 deleterious(0) possibly_damaging(0.724) TCGA-XF-A9T6-01 1 100133225 100133225 C G PALMD Missense_Mutation p.L52V 0.36 tolerated(0.09) possibly_damaging(0.459) TCGA-XF-A9T6-01 1 109337506 109337506 G A STXBP3 Missense_Mutation p.E363K 0.44 deleterious(0.02) probably_damaging(0.982) TCGA-XF-A9T6-01 1 111060873 111060873 G T KCNA10 Missense_Mutation p.F179L 0.34 tolerated(0.17) probably_damaging(0.928) TCGA-XF-A9T6-01 1 11333829 11333829 C T UBIAD1 Missense_Mutation p.P81S 0.43 deleterious(0.04) benign(0.309) TCGA-XF-A9T6-01 1 12443178 12443178 C T VPS13D Silent p.I3778I 0.35 TCGA-XF-A9T6-01 1 150418853 150418853 C A RPRD2 Nonsense_Mutation p.Y282* 0.41 TCGA-XF-A9T6-01 1 150484955 150484955 A G ECM1 Missense_Mutation p.N431S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T6-01 1 150789355 150789355 C G ARNT Missense_Mutation p.G571R 0.34 tolerated(0.14) benign(0.197) TCGA-XF-A9T6-01 1 151020851 151020851 C T C1orf56 Silent p.S176S 0.35 TCGA-XF-A9T6-01 1 151260649 151260649 C T ZNF687 Silent p.L628L 0.57 TCGA-XF-A9T6-01 1 153520079 153520079 G C S100A3 3'UTR 0.30 TCGA-XF-A9T6-01 1 155884095 155884095 C T KIAA0907 Silent p.K554K 0.19 TCGA-XF-A9T6-01 1 156236370 156236370 C T SMG5 Missense_Mutation p.G406D 0.49 deleterious(0.02) benign(0.112) TCGA-XF-A9T6-01 1 16459982 16459982 C G EPHA2 Missense_Mutation p.G620R 0.30 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 1 170914721 170914721 A G MROH9 Silent p.T8T 0.22 TCGA-XF-A9T6-01 1 180217528 180217528 T G LHX4 Missense_Mutation p.M62R 0.14 tolerated(0.17) benign(0.022) TCGA-XF-A9T6-01 1 180217533 180217533 C G LHX4 Missense_Mutation p.L64V 0.15 deleterious(0) probably_damaging(0.966) TCGA-XF-A9T6-01 1 182554975 182554975 G A RNASEL Missense_Mutation p.H323Y 0.63 tolerated(1) benign(0.001) TCGA-XF-A9T6-01 1 186337095 186337105 TTTGTTCTTGT - TPR Frame_Shift_Del p.T114Gfs*6 0.41 TCGA-XF-A9T6-01 1 18809585 18809585 G A KLHDC7A Missense_Mutation p.E704K 0.33 deleterious(0.04) possibly_damaging(0.509) TCGA-XF-A9T6-01 1 201035008 201035008 G A CACNA1S Silent p.L937L 0.27 TCGA-XF-A9T6-01 1 205739863 205739863 C T RAB7L1 Missense_Mutation p.M166I 0.75 tolerated(0.5) benign(0.268) TCGA-XF-A9T6-01 1 207314569 207314569 G A C4BPA Silent p.A464A 0.28 TCGA-XF-A9T6-01 1 224495740 224495740 G A NVL Silent p.L190L 0.68 TCGA-XF-A9T6-01 1 226551719 226551719 C G PARP1 Missense_Mutation p.S904T 0.50 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 1 231403423 231403423 T G GNPAT Intron 0.34 TCGA-XF-A9T6-01 1 232941476 232941476 C A MAP10 Missense_Mutation p.S236Y 0.23 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T6-01 1 27121304 27121304 A G PIGV Missense_Mutation p.Y260C 0.42 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T6-01 1 28339805 28339805 C A EYA3 Missense_Mutation p.D196Y 0.40 deleterious(0) probably_damaging(0.979) TCGA-XF-A9T6-01 1 28907665 28907665 C T TRNAU1AP 3'Flank 0.42 TCGA-XF-A9T6-01 1 31349709 31349709 G A SDC3 Missense_Mutation p.T187I 0.56 tolerated(0.48) unknown(0) TCGA-XF-A9T6-01 1 35260302 35260302 G T GJA4 Missense_Mutation p.S163I 0.34 deleterious(0.04) benign(0.353) TCGA-XF-A9T6-01 1 45232877 45232877 T A KIF2C 3'UTR 0.50 TCGA-XF-A9T6-01 1 47746679 47746679 G A STIL Missense_Mutation p.S484F 0.41 tolerated(0.18) benign(0.013) TCGA-XF-A9T6-01 1 52747474 52747474 G C ZFYVE9 Missense_Mutation p.R1004P 0.44 deleterious(0.01) possibly_damaging(0.651) TCGA-XF-A9T6-01 1 52849229 52849229 A T ORC1 Missense_Mutation p.W626R 0.34 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T6-01 1 65119453 65119453 T C CACHD1 Missense_Mutation p.M467T 0.43 deleterious(0) probably_damaging(0.951) TCGA-XF-A9T6-01 1 65321242 65321242 G A JAK1 Missense_Mutation p.T533M 0.47 deleterious(0.01) probably_damaging(0.983) TCGA-XF-A9T6-01 1 67519598 67519598 C G SLC35D1 Silent p.S33S 0.33 TCGA-XF-A9T6-01 1 8399633 8399633 G C SLC45A1 Missense_Mutation p.G619R 0.28 deleterious(0.02) probably_damaging(1) TCGA-XF-A9T6-01 1 84670303 84670303 T C PRKACB Intron 0.38 TCGA-XF-A9T6-01 1 92789825 92789825 G C RPAP2 Missense_Mutation p.E450Q 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-XF-A9T6-01 20 19955400 19955432 GCCTTATAAATGGAGTGCATTCTATCAAAACCA - RIN2 In_Frame_Del p.C293_R304delinsW 0.26 TCGA-XF-A9T6-01 20 20616192 20616192 G A RALGAPA2 Missense_Mutation p.T292I 0.50 deleterious(0.01) possibly_damaging(0.852) TCGA-XF-A9T6-01 20 25277151 25277151 G A PYGB Missense_Mutation p.R842Q 0.23 deleterious_low_confidence(0.01) benign(0.009) TCGA-XF-A9T6-01 20 2638832 2638832 G C NOP56 Missense_Mutation p.K559N 0.30 deleterious_low_confidence(0) benign(0.403) TCGA-XF-A9T6-01 20 34542206 34542206 T A SCAND1 Translation_Start_Site p.M1? 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.746) TCGA-XF-A9T6-01 20 42169623 42169623 C T L3MBTL1 Missense_Mutation p.T793I 0.70 deleterious_low_confidence(0.01) benign(0.023) TCGA-XF-A9T6-01 20 42344846 42344846 C G MYBL2 3'UTR 0.62 TCGA-XF-A9T6-01 20 43936862 43936862 C T RBPJL Silent p.D34D 0.25 TCGA-XF-A9T6-01 20 44669976 44669976 T G SLC12A5 Missense_Mutation p.L311R 0.67 deleterious(0.01) probably_damaging(0.973) TCGA-XF-A9T6-01 20 5574005 5574005 G A GPCPD1 Missense_Mutation p.R67C 0.30 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 20 62221428 62221428 C T GMEB2 3'UTR 0.65 TCGA-XF-A9T6-01 21 37571373 37571374 - CAGAGTAA DOPEY2 Frame_Shift_Ins p.L52Rfs*4 0.26 TCGA-XF-A9T6-01 21 37581181 37581181 G T DOPEY2 Silent p.L220L 0.16 TCGA-XF-A9T6-01 21 38072055 38072055 G A SIM2 Silent p.E3E 0.43 TCGA-XF-A9T6-01 21 38129053 38129053 C T HLCS Missense_Mutation p.C600Y 0.45 tolerated(0.06) possibly_damaging(0.876) TCGA-XF-A9T6-01 21 43327158 43327158 T C C2CD2 Missense_Mutation p.T421A 0.33 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T6-01 22 23603706 23603706 G C BCR Silent p.V577V 0.66 TCGA-XF-A9T6-01 22 26688956 26688956 G A SEZ6L Missense_Mutation p.D227N 0.25 tolerated(0.43) benign(0.03) TCGA-XF-A9T6-01 22 29956774 29956774 C G NIPSNAP1 Missense_Mutation p.G219R 0.13 deleterious(0) probably_damaging(0.983) TCGA-XF-A9T6-01 22 30772533 30772533 C T CCDC157 Silent p.C686C 0.55 TCGA-XF-A9T6-01 22 32753965 32753965 T A RFPL3 5'UTR 0.65 TCGA-XF-A9T6-01 22 38266297 38266297 C T EIF3L Missense_Mutation p.H232Y 0.73 tolerated(1) benign(0.173) TCGA-XF-A9T6-01 22 40660945 40660945 T C TNRC6B Silent p.S237S 0.42 TCGA-XF-A9T6-01 2 100055426 100055426 T C REV1 Missense_Mutation p.R284G 0.24 tolerated(0.34) benign(0) TCGA-XF-A9T6-01 2 105883980 105883980 T C TGFBRAP1 Missense_Mutation p.K815E 0.37 tolerated(0.27) benign(0.004) TCGA-XF-A9T6-01 2 109382168 109382168 G A RANBP2 Missense_Mutation p.E1725K 0.31 deleterious(0.03) probably_damaging(0.925) TCGA-XF-A9T6-01 2 109492688 109492688 G A CCDC138 Silent p.L659L 0.37 TCGA-XF-A9T6-01 2 113875543 113875543 G A IL1RN 5'UTR 0.42 TCGA-XF-A9T6-01 2 11727532 11727532 T A GREB1 Intron 0.48 TCGA-XF-A9T6-01 2 128036838 128036838 C G ERCC3 Silent p.L547L 0.46 TCGA-XF-A9T6-01 2 152346493 152346493 T A NEB Missense_Mutation p.T8466S 0.35 benign(0.358) TCGA-XF-A9T6-01 2 169721488 169721488 C G NOSTRIN 3'UTR 0.36 TCGA-XF-A9T6-01 2 17699177 17699177 C T RAD51AP2 Missense_Mutation p.G169E 0.30 deleterious(0.05) possibly_damaging(0.626) TCGA-XF-A9T6-01 2 177054729 177054729 G A HOXD1 Missense_Mutation p.M282I 0.49 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 2 177054879 177054879 C T HOXD1 3'UTR 0.44 TCGA-XF-A9T6-01 2 179398711 179398711 C T TTN Missense_Mutation p.V34211I 0.18 TCGA-XF-A9T6-01 2 179398738 179398738 A T TTN Missense_Mutation p.L34202I 0.19 TCGA-XF-A9T6-01 2 179621161 179621161 C G TTN Missense_Mutation p.C3681S 0.34 TCGA-XF-A9T6-01 2 180819028 180819042 TTCTTTGAATATACC - CWC22 In_Frame_Del p.G527_E531del 0.31 TCGA-XF-A9T6-01 2 190585420 190585420 C A ANKAR Silent p.R848R 0.36 TCGA-XF-A9T6-01 2 204354473 204354473 C T RAPH1 Missense_Mutation p.R189K 0.44 probably_damaging(0.986) TCGA-XF-A9T6-01 2 209110083 209110083 G T IDH1 Missense_Mutation p.D160E 0.41 tolerated_low_confidence(0.06) benign(0.003) TCGA-XF-A9T6-01 2 216284073 216284073 G A FN1 Nonsense_Mutation p.Q571* 0.45 TCGA-XF-A9T6-01 2 219110158 219110158 C T ARPC2 Missense_Mutation p.R189C 0.29 deleterious(0.02) benign(0.417) TCGA-XF-A9T6-01 2 219647116 219647116 C T CYP27A1 Nonsense_Mutation p.Q71* 0.31 TCGA-XF-A9T6-01 2 220072076 220072076 G A ZFAND2B Missense_Mutation p.C28Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 2 220435265 220435265 G T OBSL1 Silent p.P230P 0.40 TCGA-XF-A9T6-01 2 240960659 240960659 G A NDUFA10 Missense_Mutation p.R139C 0.50 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 2 25966616 25966616 T G ASXL2 Missense_Mutation p.N864H 0.45 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-XF-A9T6-01 2 25976470 25976470 C T ASXL2 Missense_Mutation p.E359K 0.36 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 2 27293090 27293090 G T AGBL5 Missense_Mutation p.V874F 0.40 deleterious_low_confidence(0) benign(0.08) TCGA-XF-A9T6-01 2 27680731 27680731 C T IFT172 Missense_Mutation p.D1030N 0.41 tolerated(0.08) possibly_damaging(0.617) TCGA-XF-A9T6-01 2 32631587 32631587 C T BIRC6 Missense_Mutation p.S480L 0.40 probably_damaging(0.977) TCGA-XF-A9T6-01 2 47357347 47357347 T A C2orf61 Missense_Mutation p.K151I 0.43 deleterious(0) possibly_damaging(0.754) TCGA-XF-A9T6-01 2 55749282 55749282 C T CCDC104 Missense_Mutation p.H54Y 0.33 tolerated(0.41) benign(0.079) TCGA-XF-A9T6-01 2 64208906 64208906 T G VPS54 Missense_Mutation p.K84N 0.41 deleterious(0) probably_damaging(0.919) TCGA-XF-A9T6-01 2 74757856 74757856 C G HTRA2 Missense_Mutation p.R207G 0.50 deleterious(0.03) probably_damaging(1) TCGA-XF-A9T6-01 2 86669222 86669222 C T KDM3A Missense_Mutation p.L18F 0.35 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 2 96852560 96852560 G A STARD7 Silent p.L341L 0.29 TCGA-XF-A9T6-01 3 101049200 101049200 G C SENP7 Missense_Mutation p.S910C 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-XF-A9T6-01 3 128758636 128758636 C T EFCC1 Missense_Mutation p.S581L 0.29 tolerated(0.67) benign(0.001) TCGA-XF-A9T6-01 3 132071644 132071644 G A ACPP Silent p.L315L 0.34 TCGA-XF-A9T6-01 3 136664965 136664965 C A NCK1 Missense_Mutation p.T256N 0.39 tolerated(0.5) benign(0.045) TCGA-XF-A9T6-01 3 13916622 13916622 C A WNT7A Missense_Mutation p.K40N 0.80 tolerated(0.09) benign(0.019) TCGA-XF-A9T6-01 3 148744569 148744569 C A GYG1 Nonsense_Mutation p.S301* 0.58 TCGA-XF-A9T6-01 3 148877983 148877983 T G HPS3 Missense_Mutation p.L675V 0.30 tolerated(0.76) probably_damaging(0.953) TCGA-XF-A9T6-01 3 184290927 184290927 C T EPHB3 Silent p.T273T 0.45 TCGA-XF-A9T6-01 3 192516720 192516720 G A MB21D2 Nonsense_Mutation p.Q311* 0.41 TCGA-XF-A9T6-01 3 196529910 196529910 G A PAK2 Missense_Mutation p.R104Q 0.31 tolerated(0.23) benign(0.316) TCGA-XF-A9T6-01 3 38182827 38182827 T A MYD88 3'UTR 0.89 TCGA-XF-A9T6-01 3 50255769 50255769 C T SLC38A3 RNA 0.82 TCGA-XF-A9T6-01 3 51429413 51429413 G A RBM15B Missense_Mutation p.E195K 0.88 tolerated(0.22) benign(0.012) TCGA-XF-A9T6-01 3 56667189 56667189 G A FAM208A Silent p.S1210S 0.80 TCGA-XF-A9T6-01 3 9799270 9799270 C T CAMK1 Missense_Mutation p.V356M 0.89 tolerated(0.39) benign(0.001) TCGA-XF-A9T6-01 4 104074377 104074377 C T CENPE Missense_Mutation p.E1022K 0.81 benign(0.004) TCGA-XF-A9T6-01 4 119978982 119978982 A G SYNPO2 Missense_Mutation p.R1227G 0.81 tolerated(0.05) benign(0.076) TCGA-XF-A9T6-01 4 187194325 187194325 A G F11 Missense_Mutation p.I107V 0.79 tolerated(0.06) benign(0.001) TCGA-XF-A9T6-01 4 2746181 2746181 G T TNIP2 Missense_Mutation p.A320D 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 4 3230351 3230351 C A HTT Missense_Mutation p.H2620N 0.24 benign(0.09) TCGA-XF-A9T6-01 4 3318046 3318046 G A RGS12 Missense_Mutation p.G50E 0.42 deleterious(0.02) possibly_damaging(0.811) TCGA-XF-A9T6-01 4 40339277 40339277 G A CHRNA9 Nonsense_Mutation p.W87* 0.52 TCGA-XF-A9T6-01 4 46930751 46930751 T C GABRA4 Missense_Mutation p.M386V 0.31 tolerated(0.61) benign(0.004) TCGA-XF-A9T6-01 4 48078434 48078434 T C TXK Missense_Mutation p.D408G 0.34 deleterious(0) probably_damaging(0.96) TCGA-XF-A9T6-01 4 70715251 70715251 C T SULT1E1 Missense_Mutation p.V134M 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-XF-A9T6-01 4 70823329 70823329 C T CSN2 Missense_Mutation p.R113K 0.42 tolerated(1) benign(0) TCGA-XF-A9T6-01 4 759897 759897 C T PCGF3 3'UTR 0.43 TCGA-XF-A9T6-01 4 83369072 83369072 G A ENOPH1 Splice_Site p.X29_splice 0.39 TCGA-XF-A9T6-01 4 84222163 84222163 T A HPSE Missense_Mutation p.Q474H 0.44 tolerated(0.57) benign(0.002) TCGA-XF-A9T6-01 4 89016712 89016712 G A ABCG2 Missense_Mutation p.S566L 0.89 tolerated(0.06) benign(0.071) TCGA-XF-A9T6-01 5 112174218 112174218 G A APC Missense_Mutation p.R976K 0.40 benign(0.298) TCGA-XF-A9T6-01 5 112849733 112849733 C T YTHDC2 Silent p.I47I 0.44 TCGA-XF-A9T6-01 5 131670559 131670559 T G SLC22A4 Missense_Mutation p.Y399D 0.47 tolerated(0.05) possibly_damaging(0.516) TCGA-XF-A9T6-01 5 134331968 134331968 G A CATSPER3 Silent p.S86S 0.40 TCGA-XF-A9T6-01 5 140531691 140531691 A G PCDHB6 Missense_Mutation p.H618R 0.30 deleterious(0) possibly_damaging(0.476) TCGA-XF-A9T6-01 5 140604194 140604194 C G PCDHB14 Missense_Mutation p.Q373E 0.43 tolerated_low_confidence(0.23) benign(0.297) TCGA-XF-A9T6-01 5 140866722 140866722 T C PCDHGC4 Missense_Mutation p.L661P 0.35 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T6-01 5 140957886 140957886 C T DIAPH1 Missense_Mutation p.D357N 0.36 unknown(0) TCGA-XF-A9T6-01 5 14336654 14336654 A G TRIO Missense_Mutation p.T622A 0.31 benign(0.003) TCGA-XF-A9T6-01 5 178506444 178506444 C T ZNF354C Silent p.F337F 0.43 TCGA-XF-A9T6-01 5 179229066 179229066 G A MGAT4B Nonsense_Mutation p.Q16* 0.35 TCGA-XF-A9T6-01 5 38950448 38950448 G A RICTOR Missense_Mutation p.H1168Y 0.35 tolerated(0.1) benign(0.116) TCGA-XF-A9T6-01 5 38950451 38950451 T C RICTOR Missense_Mutation p.K1167E 0.36 tolerated(0.19) benign(0.142) TCGA-XF-A9T6-01 5 43295936 43295936 G A HMGCS1 Silent p.L275L 0.47 TCGA-XF-A9T6-01 5 52096757 52096757 C T PELO Nonsense_Mutation p.Q177* 0.30 TCGA-XF-A9T6-01 5 64082363 64082363 C G CWC27 Missense_Mutation p.P170A 0.36 deleterious(0.01) possibly_damaging(0.647) TCGA-XF-A9T6-01 5 74021929 74021930 - C GFM2 Frame_Shift_Ins p.D584Rfs*16 0.23 TCGA-XF-A9T6-01 5 74325925 74325928 CAAA - GCNT4 5'UTR 0.19 TCGA-XF-A9T6-01 5 79025366 79025366 A G CMYA5 Missense_Mutation p.R260G 0.41 possibly_damaging(0.587) TCGA-XF-A9T6-01 5 889761 889761 G C BRD9 Silent p.A134A 0.16 TCGA-XF-A9T6-01 6 10404834 10404834 G T TFAP2A Missense_Mutation p.T224N 0.16 deleterious(0.01) benign(0.328) TCGA-XF-A9T6-01 6 107780434 107780434 G A PDSS2 Missense_Mutation p.S19F 0.83 tolerated(0.22) benign(0) TCGA-XF-A9T6-01 6 109309827 109309827 G A SESN1 Silent p.I496I 0.67 TCGA-XF-A9T6-01 6 111913255 111913255 G A TRAF3IP2 Missense_Mutation p.S12L 0.68 deleterious(0) possibly_damaging(0.589) TCGA-XF-A9T6-01 6 170102812 170102812 A C C6orf120 Missense_Mutation p.H86P 0.71 deleterious(0.02) possibly_damaging(0.724) TCGA-XF-A9T6-01 6 26216599 26216599 G A HIST1H2BG Silent p.T91T 0.50 TCGA-XF-A9T6-01 6 2770476 2770476 G A WRNIP1 Silent p.K379K 0.42 TCGA-XF-A9T6-01 6 30029265 30029265 T G ZNRD1 5'UTR 0.31 TCGA-XF-A9T6-01 6 30309573 30309573 G A TRIM39 Missense_Mutation p.R365K 0.36 tolerated(0.6) benign(0.04) TCGA-XF-A9T6-01 6 31619538 31619538 C T BAG6 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-XF-A9T6-01 6 3284156 3284156 T A SLC22A23 Missense_Mutation p.M545L 0.47 tolerated(0.39) possibly_damaging(0.884) TCGA-XF-A9T6-01 6 33246381 33246381 C T B3GALT4 3'UTR 0.43 TCGA-XF-A9T6-01 6 37631796 37631796 C G MDGA1 Missense_Mutation p.E52Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T6-01 6 42571355 42571355 G A UBR2 Silent p.V187V 0.47 TCGA-XF-A9T6-01 6 43970484 43970484 C G C6orf223 Missense_Mutation p.T117S 0.64 tolerated_low_confidence(0.76) unknown(0) TCGA-XF-A9T6-01 6 50803896 50803896 T G TFAP2B Missense_Mutation p.S242A 0.39 deleterious(0) benign(0.395) TCGA-XF-A9T6-01 6 51720689 51720689 A G PKHD1 Splice_Site p.X2637_splice 0.40 TCGA-XF-A9T6-01 6 617832 617832 A G EXOC2 Silent p.F180F 0.52 TCGA-XF-A9T6-01 6 69703688 69703688 G A BAI3 Missense_Mutation p.R588Q 0.75 deleterious(0) possibly_damaging(0.752) TCGA-XF-A9T6-01 7 100486415 100486415 C A UFSP1 3'UTR 0.35 TCGA-XF-A9T6-01 7 113558668 113558668 T G PPP1R3A Silent p.A128A 0.31 TCGA-XF-A9T6-01 7 116340246 116340246 G A MET Missense_Mutation p.V370I 0.25 tolerated(1) benign(0.021) TCGA-XF-A9T6-01 7 121942952 121942952 C A FEZF1 Missense_Mutation p.A324S 0.46 tolerated(0.16) benign(0.126) TCGA-XF-A9T6-01 7 128414714 128414714 G A OPN1SW Silent p.F175F 0.48 TCGA-XF-A9T6-01 7 128630032 128630032 C T TNPO3 Missense_Mutation p.R494Q 0.45 tolerated(0.15) benign(0.056) TCGA-XF-A9T6-01 7 134882828 134882828 A T WDR91 Missense_Mutation p.S323T 0.45 tolerated(0.18) benign(0.031) TCGA-XF-A9T6-01 7 142131408 142131431 TGTGCCAAGCTGCTGGCACAGAGA - TRBV5-6 Missense_Mutation 0.42 TCGA-XF-A9T6-01 7 142568017 142568017 T C EPHB6 Silent p.C886C 0.42 TCGA-XF-A9T6-01 7 150439443 150439443 A G GIMAP5 Silent p.T72T 0.45 TCGA-XF-A9T6-01 7 150553842 150553842 G A AOC1 Missense_Mutation p.R95Q 0.34 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 7 22985189 22985189 G A FAM126A 3'UTR 0.42 TCGA-XF-A9T6-01 7 25989556 25989557 - GC MIR148A RNA 0.24 TCGA-XF-A9T6-01 7 26224568 26224568 C A NFE2L3 Missense_Mutation p.S417Y 0.40 tolerated(0.14) benign(0.055) TCGA-XF-A9T6-01 7 28997583 28997583 G A AC005013.5 Intron 0.53 TCGA-XF-A9T6-01 7 43484924 43484924 G A HECW1 Missense_Mutation p.R718H 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9T6-01 7 5103994 5103994 A G RBAK Missense_Mutation p.T303A 0.23 tolerated(0.68) probably_damaging(0.998) TCGA-XF-A9T6-01 7 64166706 64166706 G T ZNF107 Missense_Mutation p.M8I 0.40 tolerated(0.64) benign(0.004) TCGA-XF-A9T6-01 7 65429329 65429329 G C GUSB Silent p.A590A 0.29 TCGA-XF-A9T6-01 7 70255458 70255458 C T AUTS2 Missense_Mutation p.R1086W 0.31 deleterious(0) probably_damaging(1) TCGA-XF-A9T6-01 7 76828789 76828789 C T FGL2 Missense_Mutation p.D108N 0.35 tolerated(0.12) benign(0.091) TCGA-XF-A9T6-01 7 91713979 91713979 A C AKAP9 Missense_Mutation p.H2891P 0.44 possibly_damaging(0.807) TCGA-XF-A9T6-01 8 101733634 101733634 G - PABPC1 Frame_Shift_Del p.Q60Sfs*13 0.76 TCGA-XF-A9T6-01 8 105010436 105010436 C G RIMS2 Intron 0.23 TCGA-XF-A9T6-01 8 109254105 109254105 T G EIF3E Missense_Mutation p.D43A 0.17 tolerated(0.19) possibly_damaging(0.458) TCGA-XF-A9T6-01 8 125487359 125487359 C T RNF139 Silent p.A3A 0.29 TCGA-XF-A9T6-01 8 133826912 133826912 A T PHF20L1 Nonsense_Mutation p.K321* 0.64 TCGA-XF-A9T6-01 8 133911088 133911088 G T TG Missense_Mutation p.S1088I 0.59 deleterious(0.02) possibly_damaging(0.649) TCGA-XF-A9T6-01 8 145010135 145010135 C G PLEC Missense_Mutation p.K298N 0.57 unknown(0) TCGA-XF-A9T6-01 8 17126380 17126380 G T VPS37A Missense_Mutation p.D111Y 0.33 deleterious(0) probably_damaging(0.954) TCGA-XF-A9T6-01 8 21999048 21999048 G C REEP4 5'UTR 0.62 TCGA-XF-A9T6-01 8 6735408 6735408 C T DEFB1 5'UTR 0.48 TCGA-XF-A9T6-01 8 86193681 86193681 T A CA13 3'UTR 0.58 TCGA-XF-A9T6-01 8 95161005 95161005 G A CDH17 Missense_Mutation p.P632S 0.40 tolerated(0.88) benign(0.027) TCGA-XF-A9T6-01 8 95384566 95384566 T A RAD54B Silent p.P855P 0.16 TCGA-XF-A9T6-01 9 100092795 100092795 A - CCDC180 Frame_Shift_Del p.K719Nfs*30 0.36 TCGA-XF-A9T6-01 9 100881470 100881470 T C TRIM14 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) benign(0.388) TCGA-XF-A9T6-01 9 104302807 104302807 T A RNF20 Nonsense_Mutation p.Y111* 0.52 TCGA-XF-A9T6-01 9 111617976 111617976 C T ACTL7B Missense_Mutation p.V79M 0.59 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T6-01 9 111903788 111903788 C A FRRS1L Missense_Mutation p.A233S 0.28 tolerated(0.24) possibly_damaging(0.82) TCGA-XF-A9T6-01 9 114246640 114246640 G A KIAA0368 Silent p.D91D 0.20 TCGA-XF-A9T6-01 9 116135977 116135977 C T HDHD3 Missense_Mutation p.V220M 0.23 tolerated(0.28) benign(0.002) TCGA-XF-A9T6-01 9 120475597 120475597 G T TLR4 Silent p.G397G 0.58 TCGA-XF-A9T6-01 9 125797424 125797424 G T GPR21 Silent p.L193L 0.26 TCGA-XF-A9T6-01 9 129157852 129157852 A G MVB12B Splice_Site p.X180_splice 0.65 TCGA-XF-A9T6-01 9 130471897 130471897 G A C9orf117 Missense_Mutation p.E120K 0.33 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T6-01 9 130828977 130828977 A G NAIF1 Missense_Mutation p.L135P 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-XF-A9T6-01 9 130986654 130986662 CAGTGCACC - DNM1 In_Frame_Del p.Q441_T443del 0.21 TCGA-XF-A9T6-01 9 133759560 133759560 C G ABL1 Missense_Mutation p.P647R 0.30 deleterious_low_confidence(0.01) benign(0.174) TCGA-XF-A9T6-01 9 136403478 136403478 T C ADAMTSL2 Missense_Mutation p.S81P 0.68 tolerated(0.1) benign(0.078) TCGA-XF-A9T6-01 9 139752022 139752022 C T MAMDC4 Silent p.T770T 0.30 TCGA-XF-A9T6-01 9 140392627 140392627 C T PNPLA7 Missense_Mutation p.V610M 0.33 deleterious(0) probably_damaging(0.946) TCGA-XF-A9T6-01 9 21206576 21206576 G C IFNA10 Missense_Mutation p.S174C 0.35 tolerated(0.08) benign(0.298) TCGA-XF-A9T6-01 9 34125217 34125217 A G DCAF12 Missense_Mutation p.L46S 0.38 deleterious(0) possibly_damaging(0.796) TCGA-XF-A9T6-01 9 35957719 35957719 G A OR2S2 Missense_Mutation p.A126V 0.35 deleterious(0) possibly_damaging(0.78) TCGA-XF-A9T6-01 9 37777701 37777701 A G TRMT10B Silent p.E316E 0.38 TCGA-XF-A9T6-01 9 38413240 38413240 C A IGFBPL1 Missense_Mutation p.W227C 0.40 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T6-01 9 5044445 5044445 C T JAK2 Silent p.A131A 0.41 TCGA-XF-A9T6-01 9 77367233 77367233 C T TRPM6 Missense_Mutation p.C1653Y 0.23 tolerated_low_confidence(0.22) benign(0) TCGA-XF-A9T6-01 9 80409453 80409453 C T GNAQ Missense_Mutation p.E221K 0.40 deleterious(0) possibly_damaging(0.857) TCGA-XF-A9T6-01 9 84268900 84268900 G A TLE1 Silent p.L96L 0.52 TCGA-XF-A9T6-01 9 86571232 86571232 C T C9orf64 Missense_Mutation p.E62K 0.34 tolerated(0.5) benign(0.297) TCGA-XF-A9T6-01 X 109298591 109298591 G T TMEM164 Intron 0.31 TCGA-XF-A9T6-01 X 128625903 128625917 TTAAAGATTACTAAC - SMARCA1 Splice_Site p.X605_splice 0.32 TCGA-XF-A9T6-01 X 130415194 130415194 G A IGSF1 Silent p.I548I 0.37 TCGA-XF-A9T6-01 X 13337763 13337763 A T ATXN3L Silent p.P97P 0.46 TCGA-XF-A9T6-01 X 135863088 135863088 G A ARHGEF6 5'UTR 0.23 TCGA-XF-A9T6-01 X 138901550 138901550 C G ATP11C Missense_Mutation p.E65Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T6-01 X 142596828 142596828 A G SPANXN3 Missense_Mutation p.I81T 0.35 deleterious(0.01) benign(0.16) TCGA-XF-A9T6-01 X 148037189 148037189 A G AFF2 Silent p.T538T 0.35 TCGA-XF-A9T6-01 X 152815061 152815061 G A ATP2B3 Missense_Mutation p.R482H 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-XF-A9T6-01 X 153248159 153248159 C T TMEM187 Missense_Mutation p.R216W 0.42 deleterious(0) possibly_damaging(0.804) TCGA-XF-A9T6-01 X 153583035 153583035 A C FLNA Silent p.S1754S 0.50 TCGA-XF-A9T6-01 X 15822263 15822263 G C ZRSR2 Missense_Mutation p.Q114H 0.36 deleterious(0.04) unknown(0) TCGA-XF-A9T6-01 X 16876951 16876951 A G RBBP7 Missense_Mutation p.V154A 0.44 tolerated(0.98) possibly_damaging(0.81) TCGA-XF-A9T6-01 X 16881165 16881165 C T RBBP7 Missense_Mutation p.E118K 0.41 deleterious(0.04) probably_damaging(0.985) TCGA-XF-A9T6-01 X 41029374 41029374 T C USP9X Silent p.N921N 0.46 TCGA-XF-A9T6-01 X 49851019 49851019 G A CLCN5 Missense_Mutation p.R350H 0.47 deleterious(0) possibly_damaging(0.872) TCGA-XF-A9T6-01 X 55757805 55757805 C T RRAGB Missense_Mutation p.T129I 0.33 tolerated(0.05) benign(0.005) TCGA-XF-A9T6-01 X 56591017 56591017 T G UBQLN2 Missense_Mutation p.I237M 0.38 tolerated(0.05) benign(0.054) TCGA-XF-A9T6-01 X 57021020 57021020 C T SPIN3 Missense_Mutation p.D121N 0.21 deleterious(0.03) benign(0.026) TCGA-XF-A9T6-01 X 73043418 73043418 A G XIST RNA 0.37 TCGA-XF-A9T6-01 X 73071228 73071228 G A XIST RNA 0.41 TCGA-XF-A9T6-01 X 75650296 75650296 G A MAGEE1 Missense_Mutation p.R658K 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T6-01 X 77284936 77284936 C T ATP7A Missense_Mutation p.H1036Y 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T6-01 X 9862883 9862883 C T SHROOM2 Missense_Mutation p.S312L 0.42 tolerated(0.06) benign(0.015) TCGA-XF-A9T8-01 10 102055962 102055962 A C PKD2L1 Missense_Mutation p.Y425D 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 10 103310522 103310522 G A BTRC Missense_Mutation p.D575N 0.11 tolerated(0.12) possibly_damaging(0.663) TCGA-XF-A9T8-01 10 103827142 103827142 C G HPS6 Silent p.L637L 0.33 TCGA-XF-A9T8-01 10 11047380 11047380 G A RP1-251M9.3 3'Flank 0.25 TCGA-XF-A9T8-01 10 116698044 116698044 C T TRUB1 Missense_Mutation p.S11L 0.48 tolerated_low_confidence(0.05) unknown(0) TCGA-XF-A9T8-01 10 126370735 126370735 G T FAM53B Nonsense_Mutation p.S116* 0.44 TCGA-XF-A9T8-01 10 126694451 126694451 C T CTBP2 Intron 0.46 TCGA-XF-A9T8-01 10 129911795 129911795 C T MKI67 Missense_Mutation p.D518N 0.46 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 10 13234282 13234282 C G MCM10 Missense_Mutation p.S516C 0.17 deleterious(0) probably_damaging(0.971) TCGA-XF-A9T8-01 10 17949613 17949613 C G MRC1L1 Missense_Mutation p.S1326C 0.18 possibly_damaging(0.834) TCGA-XF-A9T8-01 10 43089740 43089740 C G ZNF33B Missense_Mutation p.E220Q 0.21 tolerated(0.09) benign(0.023) TCGA-XF-A9T8-01 10 50666943 50666943 C T ERCC6 Missense_Mutation p.R1467Q 0.22 deleterious(0) probably_damaging(0.982) TCGA-XF-A9T8-01 10 50678733 50678733 C G ERCC6 Missense_Mutation p.L1091F 0.11 tolerated(0.68) benign(0.011) TCGA-XF-A9T8-01 10 52390415 52390415 G C RP11-50E11.3 RNA 0.17 TCGA-XF-A9T8-01 10 55587175 55587175 C T PCDH15 Missense_Mutation p.E1449K 0.25 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-XF-A9T8-01 10 61956290 61956290 C G ANK3 Missense_Mutation p.G595R 0.16 probably_damaging(0.989) TCGA-XF-A9T8-01 10 64949089 64949089 C G JMJD1C Missense_Mutation p.E2137Q 0.22 tolerated(0.16) possibly_damaging(0.501) TCGA-XF-A9T8-01 10 71243521 71243521 T C TSPAN15 Silent p.S57S 0.26 TCGA-XF-A9T8-01 10 73053170 73053170 C T UNC5B Missense_Mutation p.S594L 0.24 tolerated(0.44) benign(0.152) TCGA-XF-A9T8-01 10 74658496 74658496 C G OIT3 Missense_Mutation p.Q46E 0.24 tolerated(0.3) benign(0.001) TCGA-XF-A9T8-01 10 74660207 74660207 G A OIT3 Missense_Mutation p.G170E 0.28 deleterious(0.01) probably_damaging(1) TCGA-XF-A9T8-01 10 81063878 81063878 C T ZMIZ1 Silent p.I744I 0.19 TCGA-XF-A9T8-01 10 81113558 81113558 C G PPIF Missense_Mutation p.S195C 0.27 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-XF-A9T8-01 10 87628830 87628830 C T GRID1 Silent p.R296R 0.24 TCGA-XF-A9T8-01 10 91371744 91371744 C T PANK1 Silent p.P255P 0.29 TCGA-XF-A9T8-01 10 92508615 92508615 C G HTR7 Missense_Mutation p.E426Q 0.43 tolerated(0.05) benign(0.09) TCGA-XF-A9T8-01 10 97916829 97916829 G A ZNF518A RNA 0.38 TCGA-XF-A9T8-01 11 102239086 102239086 G A BIRC2 Missense_Mutation p.M391I 0.17 deleterious(0.04) benign(0.365) TCGA-XF-A9T8-01 11 102937215 102937215 G A DCUN1D5 Silent p.I141I 0.17 TCGA-XF-A9T8-01 11 10800269 10800269 G A CTR9 Missense_Mutation p.E1047K 0.13 tolerated(0.85) benign(0.027) TCGA-XF-A9T8-01 11 108170548 108170548 G A ATM Missense_Mutation p.D1705N 0.19 tolerated(0.2) benign(0.056) TCGA-XF-A9T8-01 11 108380255 108380255 G A EXPH5 3'UTR 0.29 TCGA-XF-A9T8-01 11 110450584 110450584 G C ARHGAP20 Missense_Mutation p.S1029C 0.17 deleterious(0.03) possibly_damaging(0.868) TCGA-XF-A9T8-01 11 113568007 113568007 G A TMPRSS5 Silent p.L154L 0.18 TCGA-XF-A9T8-01 11 114270825 114270825 C A C11orf71 Nonsense_Mutation p.E77* 0.22 TCGA-XF-A9T8-01 11 114401604 114401604 G T NXPE1 5'UTR 0.19 TCGA-XF-A9T8-01 11 117789537 117789537 C G TMPRSS13 Missense_Mutation p.R13T 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.765) TCGA-XF-A9T8-01 11 118376326 118376326 C G KMT2A Missense_Mutation p.S3240C 0.27 probably_damaging(0.988) TCGA-XF-A9T8-01 11 118780716 118780716 G C BCL9L 5'UTR 0.32 TCGA-XF-A9T8-01 11 118972318 118972318 G A DPAGT1 Silent p.I16I 0.15 TCGA-XF-A9T8-01 11 12379954 12379954 C G MICALCL Missense_Mutation p.I672M 0.18 deleterious(0.03) benign(0.217) TCGA-XF-A9T8-01 11 124857212 124857212 G C CCDC15 Missense_Mutation p.E364Q 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-XF-A9T8-01 11 129725682 129725682 C T TMEM45B Silent p.F155F 0.06 TCGA-XF-A9T8-01 11 130319659 130319659 T C ADAMTS15 Missense_Mutation p.I264T 0.17 deleterious(0) possibly_damaging(0.864) TCGA-XF-A9T8-01 11 18231297 18231297 G A RP11-113D6.10 Missense_Mutation p.R28K 0.20 deleterious_low_confidence(0.03) benign(0.001) TCGA-XF-A9T8-01 11 18956185 18956185 G T MRGPRX1 Silent p.L49L 0.26 TCGA-XF-A9T8-01 11 20113763 20113763 G C NAV2 Missense_Mutation p.E1947D 0.20 tolerated(0.18) probably_damaging(0.989) TCGA-XF-A9T8-01 11 2979642 2979642 G A NAP1L4 Silent p.F293F 0.15 TCGA-XF-A9T8-01 11 32634970 32634970 G A CCDC73 Missense_Mutation p.P965L 0.16 tolerated(0.64) possibly_damaging(0.499) TCGA-XF-A9T8-01 11 33358682 33358682 A G HIPK3 Missense_Mutation p.K428R 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 11 3727727 3727727 G A NUP98 Missense_Mutation p.S958F 0.26 deleterious(0.01) possibly_damaging(0.861) TCGA-XF-A9T8-01 11 4142993 4142993 C G RRM1 Missense_Mutation p.Q346E 0.21 tolerated_low_confidence(0.38) benign(0.001) TCGA-XF-A9T8-01 11 4661041 4661041 G A OR51D1 Silent p.L7L 0.16 TCGA-XF-A9T8-01 11 46703683 46703683 G A ARHGAP1 Silent p.L123L 0.19 TCGA-XF-A9T8-01 11 47713800 47713800 C G AGBL2 Missense_Mutation p.E235Q 0.20 tolerated(0.12) benign(0.045) TCGA-XF-A9T8-01 11 47772479 47772479 C T FNBP4 Missense_Mutation p.E299K 0.28 tolerated(0.13) probably_damaging(0.91) TCGA-XF-A9T8-01 11 55563034 55563034 G A OR5D14 Translation_Start_Site p.M1? 0.19 tolerated(0.05) benign(0.004) TCGA-XF-A9T8-01 11 56086432 56086432 C G OR8K3 Missense_Mutation p.S217C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.837) TCGA-XF-A9T8-01 11 57373917 57373917 G A SERPING1 Missense_Mutation p.R309K 0.32 tolerated(1) benign(0.015) TCGA-XF-A9T8-01 11 60694735 60694735 G C TMEM132A Missense_Mutation p.D54H 0.24 tolerated(0.1) probably_damaging(0.991) TCGA-XF-A9T8-01 11 608501 608501 A G PHRF1 Silent p.G1014G 0.32 TCGA-XF-A9T8-01 11 61508657 61508657 G T DAGLA Silent p.G669G 0.24 TCGA-XF-A9T8-01 11 62284479 62284479 C A AHNAK Missense_Mutation p.G5804W 0.28 probably_damaging(1) TCGA-XF-A9T8-01 11 62286885 62286885 C T AHNAK Missense_Mutation p.E5002K 0.19 possibly_damaging(0.517) TCGA-XF-A9T8-01 11 62430462 62430462 C G C11orf48 3'UTR 0.44 TCGA-XF-A9T8-01 11 62430472 62430472 C T C11orf48 3'UTR 0.44 TCGA-XF-A9T8-01 11 62433912 62433912 C G METTL12 Missense_Mutation p.R38G 0.17 deleterious(0) benign(0.065) TCGA-XF-A9T8-01 11 62434236 62434236 C G METTL12 Missense_Mutation p.Q146E 0.23 tolerated(0.13) benign(0.089) TCGA-XF-A9T8-01 11 62560121 62560121 G C NXF1 Missense_Mutation p.H605D 0.18 tolerated(0.47) benign(0) TCGA-XF-A9T8-01 11 63988079 63988079 G A FERMT3 Missense_Mutation p.E499K 0.15 tolerated(0.62) benign(0.422) TCGA-XF-A9T8-01 11 64054107 64054107 C T GPR137 Silent p.L95L 0.22 TCGA-XF-A9T8-01 11 64067776 64067776 C G KCNK4 3'Flank 0.30 TCGA-XF-A9T8-01 11 64597049 64597049 G T CDC42BPG Silent p.L1287L 0.36 TCGA-XF-A9T8-01 11 65271095 65271095 G C MALAT1 RNA 0.26 TCGA-XF-A9T8-01 11 65617651 65617651 G C SNX32 Missense_Mutation p.E95Q 0.15 tolerated(0.07) benign(0.076) TCGA-XF-A9T8-01 11 66114591 66114591 C T B3GNT1 Silent p.L142L 0.38 TCGA-XF-A9T8-01 11 6636537 6636537 C G TPP1 Silent p.L430L 0.21 TCGA-XF-A9T8-01 11 67049005 67049005 C G ADRBK1 Missense_Mutation p.I241M 0.18 tolerated(0.11) possibly_damaging(0.783) TCGA-XF-A9T8-01 11 67836402 67836402 G T CHKA Nonsense_Mutation p.S291* 0.22 TCGA-XF-A9T8-01 11 68030116 68030116 G A C11orf24 Missense_Mutation p.A116V 0.26 tolerated(0.32) unknown(0) TCGA-XF-A9T8-01 11 70281184 70281184 G C CTTN Missense_Mutation p.E486D 0.23 tolerated(0.11) probably_damaging(0.996) TCGA-XF-A9T8-01 11 71806017 71806017 G C LRTOMT 5'UTR 0.12 TCGA-XF-A9T8-01 11 73361616 73361616 G A PLEKHB1 Nonsense_Mutation p.W38* 0.27 TCGA-XF-A9T8-01 11 73748616 73748616 G A C2CD3 Missense_Mutation p.L1930F 0.15 tolerated(0.63) benign(0.121) TCGA-XF-A9T8-01 11 74058370 74058370 C T PGM2L1 Silent p.S254S 0.18 TCGA-XF-A9T8-01 11 74983986 74983986 G C ARRB1 Missense_Mutation p.I317M 0.24 tolerated(0.07) possibly_damaging(0.849) TCGA-XF-A9T8-01 11 75160959 75160959 C T GDPD5 Missense_Mutation p.E149K 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-XF-A9T8-01 11 7670063 7670063 G A PPFIBP2 Silent p.K610K 0.12 TCGA-XF-A9T8-01 11 77054919 77054919 C T PAK1 Missense_Mutation p.E315K 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 11 7981506 7981506 C G NLRP10 Missense_Mutation p.Q551H 0.23 deleterious(0.01) possibly_damaging(0.784) TCGA-XF-A9T8-01 11 840378 840378 C T POLR2L Silent p.E66E 0.27 TCGA-XF-A9T8-01 11 85593586 85593586 C T CCDC83 Missense_Mutation p.H71Y 0.27 deleterious(0.04) probably_damaging(0.984) TCGA-XF-A9T8-01 11 85593598 85593598 C T CCDC83 Silent p.L75L 0.30 TCGA-XF-A9T8-01 11 88300897 88300897 C A GRM5 Missense_Mutation p.G652C 0.33 deleterious(0.04) probably_damaging(1) TCGA-XF-A9T8-01 11 902253 902253 C T CHID1 Silent p.L138L 0.22 TCGA-XF-A9T8-01 11 92523307 92523307 G C FAT3 Missense_Mutation p.D1512H 0.26 benign(0.05) TCGA-XF-A9T8-01 11 9450095 9450095 C G IPO7 Missense_Mutation p.I448M 0.15 tolerated(0.5) benign(0.043) TCGA-XF-A9T8-01 11 9597510 9597510 G A WEE1 Missense_Mutation p.E218K 0.14 tolerated(0.77) benign(0.218) TCGA-XF-A9T8-01 12 100377964 100377964 G A ANKS1B Silent p.L18L 0.21 TCGA-XF-A9T8-01 12 103306618 103306618 G A PAH Missense_Mutation p.S40L 0.23 deleterious(0) benign(0.096) TCGA-XF-A9T8-01 12 109677668 109677668 G A ACACB Missense_Mutation p.E1566K 0.21 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 12 110922933 110922933 G A FAM216A Missense_Mutation p.E79K 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.716) TCGA-XF-A9T8-01 12 114384248 114384248 G C RBM19 Missense_Mutation p.I480M 0.20 tolerated(0.09) benign(0.045) TCGA-XF-A9T8-01 12 12037408 12037408 C G ETV6 Missense_Mutation p.Q347E 0.18 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T8-01 12 1219412 1219412 C T ERC1 Nonsense_Mutation p.Q406* 0.11 TCGA-XF-A9T8-01 12 122181532 122181532 C T TMEM120B Intron 0.30 TCGA-XF-A9T8-01 12 122669239 122669239 G A LRRC43 Silent p.L108L 0.32 TCGA-XF-A9T8-01 12 122825761 122825761 C G CLIP1 Missense_Mutation p.E664Q 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-XF-A9T8-01 12 122825795 122825795 C G CLIP1 Missense_Mutation p.E652D 0.15 tolerated(0.14) benign(0.003) TCGA-XF-A9T8-01 12 122826046 122826046 C G CLIP1 Missense_Mutation p.E569Q 0.22 tolerated(0.09) probably_damaging(0.989) TCGA-XF-A9T8-01 12 122990075 122990075 C T RSRC2 Silent p.%3D 0.21 TCGA-XF-A9T8-01 12 123187756 123187756 G C HCAR2 Missense_Mutation p.F25L 0.23 tolerated(0.7) benign(0.001) TCGA-XF-A9T8-01 12 123472867 123472867 C A PITPNM2 Nonsense_Mutation p.E971* 0.17 TCGA-XF-A9T8-01 12 129558623 129558623 C T TMEM132D Missense_Mutation p.E1033K 0.20 deleterious(0) benign(0.268) TCGA-XF-A9T8-01 12 133435664 133435664 C T CHFR Missense_Mutation p.D313N 0.28 deleterious(0) possibly_damaging(0.481) TCGA-XF-A9T8-01 12 14825887 14825887 C T GUCY2C Missense_Mutation p.D364N 0.23 tolerated(0.49) benign(0.007) TCGA-XF-A9T8-01 12 14959539 14959539 G A SMCO3 Missense_Mutation p.L26F 0.29 deleterious(0.04) benign(0.01) TCGA-XF-A9T8-01 12 250398 250398 G A IQSEC3 Missense_Mutation p.M700I 0.24 deleterious(0) possibly_damaging(0.708) TCGA-XF-A9T8-01 12 26217839 26217839 G A RASSF8 Missense_Mutation p.R171H 0.26 tolerated(0.16) benign(0) TCGA-XF-A9T8-01 12 27235188 27235188 G C C12orf71 Missense_Mutation p.Q77E 0.15 tolerated(0.33) benign(0.006) TCGA-XF-A9T8-01 12 27467992 27467992 G C STK38L Missense_Mutation p.K239N 0.27 tolerated(0.11) probably_damaging(0.991) TCGA-XF-A9T8-01 12 27933986 27933986 C G KLHL42 Silent p.V241V 0.19 TCGA-XF-A9T8-01 12 31255232 31255232 C G DDX11 Missense_Mutation p.S753C 0.19 deleterious(0) probably_damaging(0.964) TCGA-XF-A9T8-01 12 31850794 31850794 G C AMN1 Silent p.L138L 0.23 TCGA-XF-A9T8-01 12 31944918 31944918 G C H3F3C Silent p.L61L 0.22 TCGA-XF-A9T8-01 12 32903745 32903745 G C YARS2 Silent p.V337V 0.22 TCGA-XF-A9T8-01 12 3389631 3389631 G C TSPAN9 Missense_Mutation p.W138C 0.19 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T8-01 12 43777731 43777731 C T ADAMTS20 Missense_Mutation p.R1501K 0.19 tolerated(0.09) possibly_damaging(0.805) TCGA-XF-A9T8-01 12 44148499 44148499 G A PUS7L Missense_Mutation p.P184S 0.21 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 12 4598880 4598880 C T C12orf4 3'UTR 0.50 TCGA-XF-A9T8-01 12 48920205 48920205 C G OR8S1 Nonsense_Mutation p.S264* 0.12 TCGA-XF-A9T8-01 12 49421090 49421090 C A KMT2D Nonsense_Mutation p.E4887* 0.18 TCGA-XF-A9T8-01 12 49433365 49433365 C G KMT2D Missense_Mutation p.Q2694H 0.18 probably_damaging(0.993) TCGA-XF-A9T8-01 12 49441751 49441751 G A KMT2D Silent p.S1411S 0.20 TCGA-XF-A9T8-01 12 49445386 49445386 C T KMT2D Missense_Mutation p.E694K 0.18 unknown(0) TCGA-XF-A9T8-01 12 49448347 49448347 C T KMT2D Missense_Mutation p.E122K 0.29 unknown(0) TCGA-XF-A9T8-01 12 49523287 49523287 G T TUBA1B Silent p.V74V 0.24 TCGA-XF-A9T8-01 12 49725148 49725149 CA - TROAP Frame_Shift_Del p.T751Qfs*42 0.24 TCGA-XF-A9T8-01 12 49994493 49994493 C T FAM186B Missense_Mutation p.M310I 0.24 tolerated(1) benign(0) TCGA-XF-A9T8-01 12 5021889 5021889 A C KCNA1 Missense_Mutation p.M449L 0.15 tolerated_low_confidence(1) benign(0) TCGA-XF-A9T8-01 12 51117064 51117064 G C DIP2B Missense_Mutation p.Q1082H 0.24 deleterious(0.05) benign(0.41) TCGA-XF-A9T8-01 12 53413718 53413718 G A EIF4B Missense_Mutation p.E129K 0.14 deleterious(0) unknown(0) TCGA-XF-A9T8-01 12 53722239 53722239 G C SP7 Silent p.L329L 0.26 TCGA-XF-A9T8-01 12 54731041 54731041 C T COPZ1 Intron 0.26 TCGA-XF-A9T8-01 12 55356535 55356535 C G TESPA1 Missense_Mutation p.D383H 0.15 tolerated_low_confidence(0.12) benign(0.016) TCGA-XF-A9T8-01 12 56493443 56493443 G A ERBB3 Missense_Mutation p.D951N 0.17 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 12 56493627 56493627 G C ERBB3 Missense_Mutation p.E981D 0.17 tolerated(1) benign(0) TCGA-XF-A9T8-01 12 56494956 56494956 G A ERBB3 Missense_Mutation p.E1105K 0.16 deleterious(0.02) possibly_damaging(0.856) TCGA-XF-A9T8-01 12 56494962 56494962 G A ERBB3 Missense_Mutation p.E1107K 0.15 deleterious(0.01) possibly_damaging(0.856) TCGA-XF-A9T8-01 12 57872945 57872945 T A ARHGAP9 Missense_Mutation p.Y82F 0.29 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T8-01 12 58200272 58200272 G A AVIL Silent p.L514L 0.16 TCGA-XF-A9T8-01 12 62972277 62972277 G C MON2 Missense_Mutation p.D1523H 0.13 deleterious(0) probably_damaging(0.965) TCGA-XF-A9T8-01 12 62972283 62972283 G A MON2 Missense_Mutation p.E1525K 0.13 tolerated(0.57) benign(0.001) TCGA-XF-A9T8-01 12 66517632 66517632 A C LLPH Silent p.G126G 0.23 TCGA-XF-A9T8-01 12 6691315 6691315 C T CHD4 Silent p.L1501L 0.15 TCGA-XF-A9T8-01 12 7076691 7076691 C G PHB2 Intron 0.26 TCGA-XF-A9T8-01 12 72026239 72026239 G A ZFC3H1 Missense_Mutation p.S958L 0.09 tolerated(0.12) benign(0.416) TCGA-XF-A9T8-01 12 76796503 76796503 G A OSBPL8 Missense_Mutation p.T111I 0.27 deleterious(0.01) benign(0.102) TCGA-XF-A9T8-01 12 7967025 7967025 C A SLC2A14 Missense_Mutation p.D484Y 0.14 deleterious(0) probably_damaging(0.945) TCGA-XF-A9T8-01 12 81112162 81112162 C G MYF5 Missense_Mutation p.S176C 0.08 tolerated(0.14) probably_damaging(0.974) TCGA-XF-A9T8-01 12 81657121 81657121 G A PPFIA2 Missense_Mutation p.P1202S 0.24 deleterious_low_confidence(0.01) benign(0.333) TCGA-XF-A9T8-01 12 85285857 85285857 C T SLC6A15 Missense_Mutation p.D15N 0.16 deleterious(0.02) benign(0.121) TCGA-XF-A9T8-01 12 9301510 9301510 C T PZP 3'UTR 0.16 TCGA-XF-A9T8-01 12 93169883 93169883 G C EEA1 Missense_Mutation p.I1380M 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 12 96292198 96292198 C G CCDC38 Silent p.L193L 0.30 TCGA-XF-A9T8-01 12 98850129 98850129 G C SLC9A7P1 RNA 0.15 TCGA-XF-A9T8-01 13 103438620 103438620 C T KDELC1 Missense_Mutation p.E485K 0.16 tolerated(0.4) benign(0.005) TCGA-XF-A9T8-01 13 108518320 108518320 T C FAM155A Missense_Mutation p.S209G 0.08 tolerated(1) benign(0) TCGA-XF-A9T8-01 13 111296830 111296830 C A CARS2 Nonsense_Mutation p.E440* 0.18 TCGA-XF-A9T8-01 13 113508844 113508844 G A ATP11A Missense_Mutation p.G748E 0.14 tolerated(0.65) benign(0.033) TCGA-XF-A9T8-01 13 113834355 113834355 C T PCID2 Missense_Mutation p.E342K 0.26 tolerated(0.54) benign(0.109) TCGA-XF-A9T8-01 13 20346427 20346427 C T PSPC1 Missense_Mutation p.R210Q 0.15 tolerated(0.22) benign(0.053) TCGA-XF-A9T8-01 13 23907010 23907010 G C SACS Missense_Mutation p.Q3669E 0.22 probably_damaging(0.949) TCGA-XF-A9T8-01 13 25029183 25029183 C T PARP4 Silent p.Q910Q 0.22 TCGA-XF-A9T8-01 13 42249377 42249377 C G VWA8 Missense_Mutation p.K1461N 0.25 tolerated(0.09) possibly_damaging(0.722) TCGA-XF-A9T8-01 13 47255931 47255931 C T LRCH1 Missense_Mutation p.S212F 0.19 deleterious(0) possibly_damaging(0.828) TCGA-XF-A9T8-01 13 49051505 49051505 G C RB1 Missense_Mutation p.G893A 0.31 tolerated_low_confidence(0.31) benign(0.013) TCGA-XF-A9T8-01 13 50587172 50587172 G C TRIM13 Missense_Mutation p.E369Q 0.17 tolerated(0.44) benign(0.004) TCGA-XF-A9T8-01 13 77759426 77759426 C A MYCBP2 Nonsense_Mutation p.E1473* 0.18 TCGA-XF-A9T8-01 13 95233385 95233385 G T TGDS Missense_Mutation p.A172D 0.13 deleterious(0) benign(0.084) TCGA-XF-A9T8-01 13 96642272 96642272 C G UGGT2 Missense_Mutation p.E296Q 0.14 deleterious(0.03) benign(0.382) TCGA-XF-A9T8-01 13 98865514 98865514 G A FARP1 Silent p.Q6Q 0.14 TCGA-XF-A9T8-01 14 104026786 104026786 C T BAG5 Missense_Mutation p.R280K 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.799) TCGA-XF-A9T8-01 14 105258988 105258988 G T AKT1 5'UTR 0.21 TCGA-XF-A9T8-01 14 105258994 105258994 C T AKT1 5'UTR 0.23 TCGA-XF-A9T8-01 14 20943019 20943019 G C PNP Missense_Mutation p.E125Q 0.30 tolerated(0.21) benign(0.016) TCGA-XF-A9T8-01 14 20943315 20943315 G A PNP Missense_Mutation p.E186K 0.17 tolerated(0.3) benign(0.002) TCGA-XF-A9T8-01 14 21216202 21216202 C G EDDM3A 3'UTR 0.09 TCGA-XF-A9T8-01 14 21238307 21238307 G C EDDM3B 5'UTR 0.09 TCGA-XF-A9T8-01 14 21821946 21821946 C G SUPT16H Missense_Mutation p.E946Q 0.24 deleterious(0.02) benign(0.382) TCGA-XF-A9T8-01 14 22392735 22392735 G A TRAV14DV4 Silent p.L86L 0.24 TCGA-XF-A9T8-01 14 22616478 22616478 G C TRAV27 Silent p.V73V 0.08 TCGA-XF-A9T8-01 14 23597298 23597298 C T SLC7A8 Silent p.L457L 0.24 TCGA-XF-A9T8-01 14 23826696 23826696 C G EFS Missense_Mutation p.K475N 0.28 deleterious(0) probably_damaging(0.93) TCGA-XF-A9T8-01 14 23855641 23855641 C G MYH6 Silent p.L1614L 0.16 TCGA-XF-A9T8-01 14 23886468 23886468 C T MYH7 Silent p.Q1471Q 0.16 TCGA-XF-A9T8-01 14 35786501 35786501 G A PSMA6 Missense_Mutation p.E244K 0.56 deleterious(0) benign(0.081) TCGA-XF-A9T8-01 14 35871602 35871602 C G NFKBIA Missense_Mutation p.E302Q 0.18 tolerated(0.1) benign(0.226) TCGA-XF-A9T8-01 14 35872475 35872475 C G NFKBIA Missense_Mutation p.R143P 0.06 tolerated(0.11) probably_damaging(0.96) TCGA-XF-A9T8-01 14 55817538 55817538 G C FBXO34 Missense_Mutation p.D144H 0.14 deleterious(0) probably_damaging(0.959) TCGA-XF-A9T8-01 14 58831508 58831508 G C ARID4A Missense_Mutation p.E901Q 0.23 tolerated_low_confidence(0.16) possibly_damaging(0.864) TCGA-XF-A9T8-01 14 60923759 60923759 C G C14orf39 Missense_Mutation p.E412Q 0.06 deleterious(0.01) possibly_damaging(0.859) TCGA-XF-A9T8-01 14 61190185 61190185 C G SIX4 Missense_Mutation p.G203A 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-XF-A9T8-01 14 61190745 61190745 G C SIX4 Missense_Mutation p.I16M 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-XF-A9T8-01 14 61190788 61190788 G C SIX4 Missense_Mutation p.S2C 0.33 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-XF-A9T8-01 14 64408435 64408435 C T SYNE2 Missense_Mutation p.S55F 0.06 possibly_damaging(0.879) TCGA-XF-A9T8-01 14 64634013 64634013 C T SYNE2 Silent p.L5556L 0.13 TCGA-XF-A9T8-01 14 64877818 64877818 G C MTHFD1 Missense_Mutation p.R46T 0.12 deleterious(0.01) possibly_damaging(0.635) TCGA-XF-A9T8-01 14 67525466 67525466 G A GPHN Missense_Mutation p.M369I 0.06 tolerated(0.39) benign(0.393) TCGA-XF-A9T8-01 14 67610141 67610141 C T GPHN Missense_Mutation p.S604L 0.13 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 14 67849272 67849272 G C EIF2S1 Missense_Mutation p.E263Q 0.16 tolerated(0.1) benign(0.034) TCGA-XF-A9T8-01 14 74825508 74825508 C T VRTN Silent p.F674F 0.26 TCGA-XF-A9T8-01 14 76045651 76045651 C G FLVCR2 Missense_Mutation p.F112L 0.16 tolerated(0.06) benign(0.09) TCGA-XF-A9T8-01 14 76330187 76330187 G C TTLL5 Missense_Mutation p.Q1168H 0.38 tolerated(0.08) benign(0.049) TCGA-XF-A9T8-01 14 79117553 79117553 C G NRXN3 5'UTR 0.13 TCGA-XF-A9T8-01 14 81046741 81046741 C G CEP128 Missense_Mutation p.D945H 0.37 deleterious(0) possibly_damaging(0.81) TCGA-XF-A9T8-01 14 88894023 88894023 G A SPATA7 Missense_Mutation p.E299K 0.17 tolerated(0.06) benign(0.16) TCGA-XF-A9T8-01 14 89041178 89041178 C T ZC3H14 Missense_Mutation p.P335S 0.41 tolerated(0.06) possibly_damaging(0.747) TCGA-XF-A9T8-01 14 90770438 90770438 C T NRDE2 Nonsense_Mutation p.W282* 0.23 TCGA-XF-A9T8-01 14 91738961 91738961 C T CCDC88C 3'UTR 0.16 TCGA-XF-A9T8-01 15 102346017 102346017 C T OR4F6 Missense_Mutation p.S32L 0.18 tolerated_low_confidence(0.08) benign(0.053) TCGA-XF-A9T8-01 15 25330540 25330540 G A SNORD116-18 RNA 0.21 TCGA-XF-A9T8-01 15 28478819 28478819 C T HERC2 Missense_Mutation p.E1448K 0.14 benign(0.026) TCGA-XF-A9T8-01 15 29561277 29561277 C G NDNL2 Missense_Mutation p.K211N 0.15 deleterious(0.03) possibly_damaging(0.735) TCGA-XF-A9T8-01 15 42585102 42585102 C G GANC Missense_Mutation p.L167V 0.07 benign(0.039) TCGA-XF-A9T8-01 15 43328411 43328411 C A UBR1 Nonsense_Mutation p.E719* 0.27 TCGA-XF-A9T8-01 15 50152602 50152602 G C ATP8B4 Nonsense_Mutation p.S1123* 0.20 TCGA-XF-A9T8-01 15 50881790 50881790 G C TRPM7 Missense_Mutation p.S1463C 0.14 deleterious_low_confidence(0.03) benign(0.103) TCGA-XF-A9T8-01 15 54306146 54306146 C T UNC13C Missense_Mutation p.S349L 0.13 tolerated_low_confidence(0.1) benign(0.018) TCGA-XF-A9T8-01 15 59368241 59368241 G A RNF111 Missense_Mutation p.C592Y 0.23 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-XF-A9T8-01 15 59500317 59500317 G C LDHAL6B 3'UTR 0.12 TCGA-XF-A9T8-01 15 59944508 59944508 C T GTF2A2 5'UTR 0.26 TCGA-XF-A9T8-01 15 62238074 62238074 G C VPS13C Missense_Mutation p.S1663C 0.19 tolerated(0.09) benign(0.167) TCGA-XF-A9T8-01 15 66206297 66206297 C T MEGF11 Missense_Mutation p.E830K 0.25 tolerated(0.49) benign(0.261) TCGA-XF-A9T8-01 15 66829597 66829597 C T ZWILCH Nonsense_Mutation p.Q524* 0.28 TCGA-XF-A9T8-01 15 70991936 70991936 C G UACA Missense_Mutation p.E48Q 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-XF-A9T8-01 15 74328369 74328369 C G PML Intron 0.24 TCGA-XF-A9T8-01 15 76222343 76222343 C G FBXO22 Missense_Mutation p.I249M 0.16 tolerated(0.09) possibly_damaging(0.589) TCGA-XF-A9T8-01 15 76301591 76301591 C G NRG4 Silent p.L18L 0.21 TCGA-XF-A9T8-01 15 79064149 79064149 G C ADAMTS7 Missense_Mutation p.I718M 0.12 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T8-01 15 79272977 79272977 C G RASGRF1 Missense_Mutation p.R1176T 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 15 83333116 83333116 C T AP3B2 Intron 0.17 TCGA-XF-A9T8-01 15 85327787 85327787 C G ZNF592 Missense_Mutation p.F627L 0.23 deleterious(0.01) benign(0.154) TCGA-XF-A9T8-01 15 89807248 89807248 C T FANCI Silent p.L220L 0.10 TCGA-XF-A9T8-01 15 93489418 93489418 C G CHD2 Nonsense_Mutation p.S450* 0.25 TCGA-XF-A9T8-01 16 14947427 14947427 C G NOMO1 Missense_Mutation p.S280C 0.21 tolerated(0.1) possibly_damaging(0.619) TCGA-XF-A9T8-01 16 15829285 15829285 C G MYH11 Silent p.L1155L 0.09 TCGA-XF-A9T8-01 16 15829309 15829309 C T MYH11 Silent p.Q1147Q 0.12 TCGA-XF-A9T8-01 16 20410434 20410434 G A PDILT Silent p.L63L 0.12 TCGA-XF-A9T8-01 16 24043488 24043488 A G PRKCB Missense_Mutation p.H107R 0.14 tolerated(0.05) benign(0.16) TCGA-XF-A9T8-01 16 29857244 29857244 G C MVP Silent p.L694L 0.23 TCGA-XF-A9T8-01 16 30364593 30364593 C T CD2BP2 Missense_Mutation p.G275E 0.08 tolerated(0.92) benign(0.004) TCGA-XF-A9T8-01 16 30365287 30365287 C G CD2BP2 Missense_Mutation p.D104H 0.25 deleterious(0) benign(0.091) TCGA-XF-A9T8-01 16 30666443 30666443 C G PRR14 Silent p.V384V 0.23 TCGA-XF-A9T8-01 16 30735633 30735633 C T SRCAP Missense_Mutation p.P1630S 0.28 probably_damaging(0.968) TCGA-XF-A9T8-01 16 31143399 31143399 C T PRSS8 Silent p.L321L 0.38 TCGA-XF-A9T8-01 16 49660127 49660127 G C ZNF423 Missense_Mutation p.F1177L 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 16 55525729 55525729 C G MMP2 Silent p.L399L 0.17 TCGA-XF-A9T8-01 16 56501895 56501895 G A OGFOD1 Missense_Mutation p.E289K 0.16 deleterious(0.02) benign(0.063) TCGA-XF-A9T8-01 16 57057730 57057730 C T NLRC5 Missense_Mutation p.S130L 0.17 deleterious(0.03) benign(0.179) TCGA-XF-A9T8-01 16 67319084 67319084 C T PLEKHG4 Missense_Mutation p.P721S 0.24 tolerated(0.83) benign(0.004) TCGA-XF-A9T8-01 16 67915076 67915076 G C EDC4 Missense_Mutation p.E877Q 0.07 deleterious(0.01) probably_damaging(0.982) TCGA-XF-A9T8-01 16 67915412 67915412 G A EDC4 Missense_Mutation p.M934I 0.22 deleterious(0.04) benign(0.001) TCGA-XF-A9T8-01 16 69196989 69196989 C T CIRH1A Missense_Mutation p.H519Y 0.21 deleterious(0) benign(0.004) TCGA-XF-A9T8-01 16 700265 700265 C T WDR90 Silent p.V97V 0.19 TCGA-XF-A9T8-01 16 71571673 71571673 G C CHST4 Missense_Mutation p.E365Q 0.17 tolerated(0.09) benign(0.021) TCGA-XF-A9T8-01 16 71779423 71779423 G C AP1G1 Missense_Mutation p.P612A 0.11 tolerated(0.74) benign(0.003) TCGA-XF-A9T8-01 16 74726289 74726289 C T MLKL Silent p.L162L 0.14 TCGA-XF-A9T8-01 16 77369704 77369704 C T ADAMTS18 Missense_Mutation p.R603Q 0.13 deleterious(0.03) probably_damaging(0.966) TCGA-XF-A9T8-01 16 81078222 81078222 G C ATMIN Missense_Mutation p.D707H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-XF-A9T8-01 16 88747913 88747913 G C SNAI3 Missense_Mutation p.R96G 0.17 tolerated(0.4) benign(0.003) TCGA-XF-A9T8-01 16 89294548 89294548 G A ZNF778 Missense_Mutation p.E590K 0.24 tolerated(0.45) benign(0.099) TCGA-XF-A9T8-01 16 89842160 89842160 C G FANCA Missense_Mutation p.E630D 0.16 deleterious(0.04) benign(0.217) TCGA-XF-A9T8-01 16 89940220 89940220 G A TCF25 Missense_Mutation p.G49R 0.62 tolerated(0.86) benign(0.003) TCGA-XF-A9T8-01 17 10415430 10415430 G A MYH1 Silent p.V409V 0.14 TCGA-XF-A9T8-01 17 11787059 11787059 G C DNAH9 Missense_Mutation p.E3655Q 0.13 benign(0.035) TCGA-XF-A9T8-01 17 11886701 11886701 C G ZNF18 Missense_Mutation p.D259H 0.17 deleterious(0.01) possibly_damaging(0.826) TCGA-XF-A9T8-01 17 12032558 12032558 G A MAP2K4 Missense_Mutation p.E332K 0.17 tolerated(0.29) benign(0.113) TCGA-XF-A9T8-01 17 12656593 12656593 C A MYOCD Nonsense_Mutation p.S663* 0.08 TCGA-XF-A9T8-01 17 15215662 15215662 G A TEKT3 Nonsense_Mutation p.Q339* 0.19 TCGA-XF-A9T8-01 17 15973811 15973811 G C NCOR1 Nonsense_Mutation p.S1394* 0.14 TCGA-XF-A9T8-01 17 16667298 16667298 G T CCDC144A Nonsense_Mutation p.E1303* 0.08 TCGA-XF-A9T8-01 17 17150440 17150440 G A COPS3 Missense_Mutation p.S415L 0.08 tolerated(0.44) benign(0) TCGA-XF-A9T8-01 17 18647716 18647716 G C FBXW10 Missense_Mutation p.Q53H 0.18 tolerated(0.07) possibly_damaging(0.867) TCGA-XF-A9T8-01 17 2593934 2593934 G A CLUH Missense_Mutation p.S1295F 0.21 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-XF-A9T8-01 17 26114739 26114739 G A NOS2 Silent p.I144I 0.24 TCGA-XF-A9T8-01 17 26818745 26818745 C T SLC13A2 Intron 0.26 TCGA-XF-A9T8-01 17 27188549 27188549 C A ERAL1 3'Flank 0.25 TCGA-XF-A9T8-01 17 27809258 27809258 G C TAOK1 Missense_Mutation p.D203H 0.13 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T8-01 17 27946728 27946728 C G CORO6 Missense_Mutation p.D88H 0.29 deleterious(0.04) probably_damaging(0.94) TCGA-XF-A9T8-01 17 29663696 29663696 C G NF1 Missense_Mutation p.S2064C 0.15 deleterious(0) probably_damaging(0.987) TCGA-XF-A9T8-01 17 32956194 32956194 G A TMEM132E Missense_Mutation p.D347N 0.24 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T8-01 17 33486491 33486491 G A UNC45B Silent p.L302L 0.12 TCGA-XF-A9T8-01 17 34893290 34893290 G T PIGW Nonsense_Mutation p.E114* 0.25 TCGA-XF-A9T8-01 17 34893414 34893414 G A PIGW Missense_Mutation p.R155K 0.22 deleterious(0) possibly_damaging(0.677) TCGA-XF-A9T8-01 17 34893934 34893934 G C PIGW Missense_Mutation p.K328N 0.15 deleterious(0.02) possibly_damaging(0.673) TCGA-XF-A9T8-01 17 34956605 34956605 G C DHRS11 Missense_Mutation p.Q252H 0.23 tolerated(0.54) benign(0.002) TCGA-XF-A9T8-01 17 36485023 36485023 C G GPR179 Missense_Mutation p.E1477Q 0.27 deleterious(0.03) possibly_damaging(0.859) TCGA-XF-A9T8-01 17 36486351 36486351 G C GPR179 Missense_Mutation p.S1034C 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 17 37884151 37884151 C T ERBB2 Missense_Mutation p.H1208Y 0.14 tolerated(0.25) benign(0.125) TCGA-XF-A9T8-01 17 38185150 38185150 C G MED24 Missense_Mutation p.K446N 0.27 tolerated(0.2) possibly_damaging(0.877) TCGA-XF-A9T8-01 17 39092489 39092489 C A KRT23 Nonsense_Mutation p.E123* 0.20 TCGA-XF-A9T8-01 17 39525837 39525837 C T KRT33B Missense_Mutation p.E56K 0.24 deleterious(0) probably_damaging(0.954) TCGA-XF-A9T8-01 17 39535670 39535670 C T KRT34 Missense_Mutation p.E313K 0.09 deleterious(0.02) possibly_damaging(0.654) TCGA-XF-A9T8-01 17 39659541 39659541 C G KRT13 Missense_Mutation p.E245Q 0.16 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T8-01 17 39847095 39847095 G A EIF1 3'UTR 0.10 TCGA-XF-A9T8-01 17 40456553 40456553 G A STAT5A Silent p.L421L 0.15 TCGA-XF-A9T8-01 17 40766868 40766868 G A TUBG1 Missense_Mutation p.E389K 0.20 tolerated(0.98) benign(0.007) TCGA-XF-A9T8-01 17 40818404 40818404 G A TUBG2 Missense_Mutation p.A354T 0.07 tolerated(0.11) benign(0.084) TCGA-XF-A9T8-01 17 40950643 40950643 G A COA3 Silent p.F19F 0.15 TCGA-XF-A9T8-01 17 42744754 42744754 G A C17orf104 Missense_Mutation p.R492Q 0.21 tolerated(0.95) benign(0.016) TCGA-XF-A9T8-01 17 43045431 43045431 C T C1QL1 5'UTR 0.14 TCGA-XF-A9T8-01 17 47874175 47874175 G C KAT7 Missense_Mutation p.R76T 0.22 deleterious_low_confidence(0.01) benign(0.204) TCGA-XF-A9T8-01 17 48704141 48704141 C T CACNA1G 3'UTR 0.25 TCGA-XF-A9T8-01 17 49825136 49825136 G A CA10 Missense_Mutation p.R108C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T8-01 17 5013128 5013128 G A ZNF232 Missense_Mutation p.S20F 0.15 tolerated_low_confidence(0.23) possibly_damaging(0.683) TCGA-XF-A9T8-01 17 5264613 5264613 C G RABEP1 Silent p.L402L 0.20 TCGA-XF-A9T8-01 17 5462056 5462056 C T NLRP1 Missense_Mutation p.E654K 0.14 tolerated(0.55) benign(0.015) TCGA-XF-A9T8-01 17 57272757 57272757 G A PRR11 Silent p.L270L 0.16 TCGA-XF-A9T8-01 17 57290755 57290755 G A SMG8 Silent p.R857R 0.39 TCGA-XF-A9T8-01 17 57292276 57292276 G C SMG8 Missense_Mutation p.E963D 0.19 tolerated(0.46) benign(0.107) TCGA-XF-A9T8-01 17 58289393 58289393 C T USP32 Missense_Mutation p.R724K 0.14 tolerated(0.43) possibly_damaging(0.867) TCGA-XF-A9T8-01 17 58289433 58289433 C A USP32 Nonsense_Mutation p.E711* 0.12 TCGA-XF-A9T8-01 17 58524943 58524943 C T APPBP2 Silent p.%3D 0.16 TCGA-XF-A9T8-01 17 59557476 59557476 A T TBX4 Missense_Mutation p.S273C 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-XF-A9T8-01 17 65147255 65147255 G C HELZ Missense_Mutation p.Q755E 0.17 tolerated(0.08) benign(0.407) TCGA-XF-A9T8-01 17 66265272 66265272 C T SLC16A6 Missense_Mutation p.E513K 0.12 deleterious_low_confidence(0.02) benign(0.242) TCGA-XF-A9T8-01 17 6903688 6903688 C T ALOX12 Silent p.L281L 0.28 TCGA-XF-A9T8-01 17 6920652 6920652 C G C17orf49 3'UTR 0.19 TCGA-XF-A9T8-01 17 7096379 7096379 G A DLG4 Missense_Mutation p.S627L 0.15 tolerated(0.15) possibly_damaging(0.629) TCGA-XF-A9T8-01 17 7132529 7132529 G C DVL2 Missense_Mutation p.I294M 0.26 deleterious(0) probably_damaging(0.989) TCGA-XF-A9T8-01 17 72436908 72436908 G A GPRC5C Silent p.Q376Q 0.11 TCGA-XF-A9T8-01 17 72667651 72667651 G A CTD-2006K23.2 3'Flank 0.43 TCGA-XF-A9T8-01 17 73177191 73177191 T C SUMO2 Silent p.T38T 0.05 TCGA-XF-A9T8-01 17 7351982 7351982 G A CHRNB1 Missense_Mutation p.R232H 0.23 tolerated(0.68) benign(0.002) TCGA-XF-A9T8-01 17 73739797 73739797 G C ITGB4 Missense_Mutation p.R989T 0.10 tolerated(0.2) benign(0.002) TCGA-XF-A9T8-01 17 73759142 73759142 G A GALK1 Silent p.F188F 0.09 TCGA-XF-A9T8-01 17 73774795 73774795 C A H3F3B Nonsense_Mutation p.E98* 0.41 TCGA-XF-A9T8-01 17 74468785 74468785 G A RHBDF2 Missense_Mutation p.L712F 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 17 7592102 7592102 G T WRAP53 Nonsense_Mutation p.E46* 0.26 TCGA-XF-A9T8-01 17 76525703 76525703 C T DNAH17 Missense_Mutation p.D1120N 0.38 benign(0.005) TCGA-XF-A9T8-01 17 7840088 7840088 C G CNTROB Missense_Mutation p.Q261E 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-XF-A9T8-01 17 8146437 8146437 G C CTC1 Silent p.V21V 0.19 TCGA-XF-A9T8-01 17 8384692 8384692 C T MYH10 Missense_Mutation p.E1738K 0.25 benign(0.32) TCGA-XF-A9T8-01 17 9862596 9862596 C T GAS7 Intron 0.15 TCGA-XF-A9T8-01 18 12794399 12794399 C A PTPN2 Nonsense_Mutation p.E376* 0.14 TCGA-XF-A9T8-01 18 13049486 13049486 C G CEP192 Nonsense_Mutation p.S899* 0.23 TCGA-XF-A9T8-01 18 20877957 20877957 C T TMEM241 3'UTR 0.18 TCGA-XF-A9T8-01 18 22671972 22671972 C T ZNF521 Silent p.L1244L 0.15 TCGA-XF-A9T8-01 18 28672097 28672097 C T DSC2 Silent p.K107K 0.17 TCGA-XF-A9T8-01 18 32917690 32917690 C T ZNF24 Missense_Mutation p.E205K 0.05 tolerated(0.63) benign(0.009) TCGA-XF-A9T8-01 18 44408028 44408028 C G PIAS2 Missense_Mutation p.D468H 0.34 deleterious(0) possibly_damaging(0.562) TCGA-XF-A9T8-01 18 47311614 47311614 C A ACAA2 Silent p.L354L 0.22 TCGA-XF-A9T8-01 18 48604632 48604632 C T SMAD4 Missense_Mutation p.S485L 0.09 tolerated(0.07) probably_damaging(0.914) TCGA-XF-A9T8-01 18 51731376 51731376 G A MBD2 Nonsense_Mutation p.Q232* 0.24 TCGA-XF-A9T8-01 18 641365 641365 G A CLUL1 Missense_Mutation p.E345K 0.20 deleterious(0.04) benign(0.306) TCGA-XF-A9T8-01 18 64178814 64178814 C T CDH19 Missense_Mutation p.D523N 0.13 deleterious(0.04) probably_damaging(1) TCGA-XF-A9T8-01 18 66721302 66721302 G A CCDC102B Silent p.Q490Q 0.16 TCGA-XF-A9T8-01 18 67992188 67992188 C T SOCS6 Missense_Mutation p.S95F 0.13 deleterious_low_confidence(0) benign(0.1) TCGA-XF-A9T8-01 18 70532046 70532046 C A NETO1 Nonsense_Mutation p.E73* 0.21 TCGA-XF-A9T8-01 18 77221328 77221328 G A NFATC1 Missense_Mutation p.E628K 0.11 deleterious(0) possibly_damaging(0.761) TCGA-XF-A9T8-01 18 77896442 77896442 G A ADNP2 Missense_Mutation p.R1049H 0.19 tolerated(0.3) possibly_damaging(0.896) TCGA-XF-A9T8-01 18 8143645 8143645 G A PTPRM Missense_Mutation p.G723E 0.22 deleterious(0.03) probably_damaging(0.987) TCGA-XF-A9T8-01 19 10506702 10506702 C G CDC37 Missense_Mutation p.E94Q 0.08 tolerated(0.2) possibly_damaging(0.82) TCGA-XF-A9T8-01 19 10939861 10939861 C T DNM2 Silent p.I736I 0.09 TCGA-XF-A9T8-01 19 11485452 11485452 C G SWSAP1 Silent p.L11L 0.39 TCGA-XF-A9T8-01 19 11759247 11759247 G C ZNF833P RNA 0.15 TCGA-XF-A9T8-01 19 13476246 13476246 C T CACNA1A Missense_Mutation p.M223I 0.16 benign(0.216) TCGA-XF-A9T8-01 19 15794549 15794549 C T CYP4F12 Silent p.F298F 0.14 TCGA-XF-A9T8-01 19 16284256 16284256 C G CIB3 Missense_Mutation p.E11Q 0.33 tolerated(0.14) benign(0.018) TCGA-XF-A9T8-01 19 17265157 17265157 G A MYO9B Silent p.L377L 0.18 TCGA-XF-A9T8-01 19 19136127 19136127 C T SUGP2 Missense_Mutation p.D344N 0.26 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 19 20308213 20308213 C G ZNF486 Missense_Mutation p.H232D 0.20 deleterious(0.02) possibly_damaging(0.566) TCGA-XF-A9T8-01 19 21558738 21558738 G A ZNF738 Silent p.K97K 0.30 TCGA-XF-A9T8-01 19 22941482 22941482 G A ZNF99 Missense_Mutation p.S410L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-XF-A9T8-01 19 23405204 23405204 C T ZNF724P Missense_Mutation p.E615K 0.15 tolerated(0.07) benign(0.409) TCGA-XF-A9T8-01 19 31038933 31038933 C T ZNF536 Missense_Mutation p.R803W 0.16 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T8-01 19 34263621 34263621 G A CHST8 Missense_Mutation p.E310K 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 19 35175908 35175908 C T ZNF302 Silent p.F322F 0.24 TCGA-XF-A9T8-01 19 37643204 37643204 G A ZNF585A Nonsense_Mutation p.Q478* 0.20 TCGA-XF-A9T8-01 19 38159943 38159943 G C ZNF781 3'UTR 0.29 TCGA-XF-A9T8-01 19 38190635 38190635 G C ZNF607 Missense_Mutation p.Q133E 0.20 tolerated(0.09) benign(0.224) TCGA-XF-A9T8-01 19 39216366 39216366 G T ACTN4 Missense_Mutation p.E671D 0.15 tolerated(0.15) probably_damaging(0.971) TCGA-XF-A9T8-01 19 4048152 4048152 G A ZBTB7A Silent p.Y451Y 0.16 TCGA-XF-A9T8-01 19 41622169 41622169 G C CYP2F1 Missense_Mutation p.D26H 0.19 tolerated(0.09) benign(0.002) TCGA-XF-A9T8-01 19 42819223 42819223 G C TMEM145 Missense_Mutation p.E167Q 0.19 tolerated(0.09) possibly_damaging(0.751) TCGA-XF-A9T8-01 19 42865107 42865107 G C MEGF8 Missense_Mutation p.G1823A 0.17 tolerated(0.3) benign(0.016) TCGA-XF-A9T8-01 19 44377300 44377300 C G ZNF404 Missense_Mutation p.D356H 0.25 deleterious(0) possibly_damaging(0.468) TCGA-XF-A9T8-01 19 44610825 44610825 C T ZNF224 Missense_Mutation p.S171L 0.20 tolerated(0.32) possibly_damaging(0.881) TCGA-XF-A9T8-01 19 44832328 44832328 C G ZNF112 Missense_Mutation p.C667S 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 19 46303817 46303817 G A RSPH6A Silent p.I601I 0.42 TCGA-XF-A9T8-01 19 46443157 46443157 C G NOVA2 Missense_Mutation p.Q481H 0.24 deleterious(0) probably_damaging(0.912) TCGA-XF-A9T8-01 19 46522604 46522604 C T PGLYRP1 Silent p.L161L 0.21 TCGA-XF-A9T8-01 19 49422373 49422373 G A NUCB1 Missense_Mutation p.M301I 0.29 deleterious(0.03) benign(0.085) TCGA-XF-A9T8-01 19 49422541 49422541 G A NUCB1 Missense_Mutation p.E334K 0.36 tolerated(0.18) benign(0.006) TCGA-XF-A9T8-01 19 49658529 49658529 C G HRC 5'UTR 0.22 TCGA-XF-A9T8-01 19 51462293 51462293 C G KLK6 3'UTR 0.18 TCGA-XF-A9T8-01 19 51520466 51520466 G A KLK10 Nonsense_Mutation p.Q57* 0.40 TCGA-XF-A9T8-01 19 51827016 51827016 C G IGLON5 Missense_Mutation p.L87V 0.19 deleterious(0) probably_damaging(0.967) TCGA-XF-A9T8-01 19 5244386 5244386 C T PTPRS Missense_Mutation p.E366K 0.28 tolerated(0.09) possibly_damaging(0.746) TCGA-XF-A9T8-01 19 53209544 53209544 C G ZNF611 Missense_Mutation p.G255A 0.23 tolerated(0.07) benign(0.313) TCGA-XF-A9T8-01 19 54656052 54656052 G A CNOT3 Silent p.L565L 0.26 TCGA-XF-A9T8-01 19 54657241 54657241 G A CNOT3 Intron 0.23 TCGA-XF-A9T8-01 19 55046962 55046962 G A KIR3DX1 Missense_Mutation p.M169I 0.19 tolerated(0.43) benign(0.031) TCGA-XF-A9T8-01 19 55046971 55046971 G A KIR3DX1 Silent p.G172G 0.18 TCGA-XF-A9T8-01 19 55087518 55087518 C G LILRA2 Silent p.L399L 0.21 TCGA-XF-A9T8-01 19 55758297 55758297 C T PPP6R1 Missense_Mutation p.A59T 0.52 tolerated(0.45) benign(0.012) TCGA-XF-A9T8-01 19 56896385 56896385 T C ZNF582 Missense_Mutation p.N134S 0.20 tolerated(0.34) benign(0.002) TCGA-XF-A9T8-01 19 5696173 5696173 G C LONP1 Missense_Mutation p.F635L 0.26 deleterious(0) probably_damaging(0.986) TCGA-XF-A9T8-01 19 57327067 57327067 C T PEG3 Missense_Mutation p.E915K 0.15 deleterious(0.04) benign(0.173) TCGA-XF-A9T8-01 19 57646468 57646468 G A ZIM3 Missense_Mutation p.H413Y 0.18 deleterious(0) probably_damaging(0.99) TCGA-XF-A9T8-01 19 57669783 57669783 G A DUXA Silent p.I117I 0.17 TCGA-XF-A9T8-01 19 58724514 58724514 C G ZNF274 3'UTR 0.10 TCGA-XF-A9T8-01 19 58944738 58944738 G C ZNF132 Silent p.L691L 0.15 TCGA-XF-A9T8-01 19 6924748 6924748 C G EMR1 Silent p.L617L 0.14 TCGA-XF-A9T8-01 19 7566164 7566164 C T C19orf45 Silent p.F152F 0.24 TCGA-XF-A9T8-01 19 7762141 7762141 C T FCER2 Silent p.Q99Q 0.22 TCGA-XF-A9T8-01 19 8201331 8201331 G T FBN3 Missense_Mutation p.S429Y 0.35 deleterious(0.03) possibly_damaging(0.786) TCGA-XF-A9T8-01 19 872088 872088 G A MED16 Silent p.L646L 0.47 TCGA-XF-A9T8-01 19 9018439 9018439 G C MUC16 Missense_Mutation p.L12579V 0.28 possibly_damaging(0.593) TCGA-XF-A9T8-01 19 9057036 9057036 G C MUC16 Missense_Mutation p.S10137C 0.31 benign(0.124) TCGA-XF-A9T8-01 19 9059559 9059559 G C MUC16 Missense_Mutation p.S9296C 0.11 unknown(0) TCGA-XF-A9T8-01 19 9065727 9065727 G C MUC16 Nonsense_Mutation p.S7240* 0.29 TCGA-XF-A9T8-01 19 9640120 9640120 G A ZNF426 Nonsense_Mutation p.Q201* 0.15 TCGA-XF-A9T8-01 1 103355070 103355070 C A COL11A1 Nonsense_Mutation p.E1469* 0.11 TCGA-XF-A9T8-01 1 10690050 10690050 C T PEX14 3'UTR 0.22 TCGA-XF-A9T8-01 1 109270677 109270677 C T FNDC7 Silent p.F453F 0.25 TCGA-XF-A9T8-01 1 109395216 109395216 G C AKNAD1 Missense_Mutation p.S24C 0.08 deleterious(0.02) probably_damaging(0.935) TCGA-XF-A9T8-01 1 109553931 109553931 G A WDR47 Missense_Mutation p.S253L 0.25 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T8-01 1 109777857 109777857 C T SARS Missense_Mutation p.S258F 0.20 tolerated(0.1) benign(0.021) TCGA-XF-A9T8-01 1 111826737 111826737 C T CHIAP2 RNA 0.19 TCGA-XF-A9T8-01 1 111889669 111889669 G A PIFO Missense_Mutation p.D53N 0.20 deleterious(0.01) benign(0.159) TCGA-XF-A9T8-01 1 111892843 111892843 G A PIFO Missense_Mutation p.E169K 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 1 113657430 113657430 C G LRIG2 Missense_Mutation p.S821C 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 1 114184792 114184792 G A MAGI3 Silent p.Q540Q 0.23 TCGA-XF-A9T8-01 1 118609486 118609486 C T SPAG17 Missense_Mutation p.D808N 0.23 deleterious(0) probably_damaging(0.988) TCGA-XF-A9T8-01 1 120165535 120165535 G C ZNF697 Missense_Mutation p.F477L 0.36 tolerated(0.65) probably_damaging(0.937) TCGA-XF-A9T8-01 1 12368508 12368508 G A VPS13D Missense_Mutation p.D2154N 0.29 probably_damaging(0.99) TCGA-XF-A9T8-01 1 147096275 147096275 C T BCL9 Missense_Mutation p.P1266S 0.15 tolerated(0.27) benign(0.019) TCGA-XF-A9T8-01 1 147380362 147380362 G A GJA8 Missense_Mutation p.G94R 0.50 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 1 149937765 149937765 G A OTUD7B Nonsense_Mutation p.Q181* 0.19 TCGA-XF-A9T8-01 1 151495934 151495934 C G CGN Missense_Mutation p.Q389E 0.54 tolerated(0.58) benign(0.012) TCGA-XF-A9T8-01 1 152281042 152281042 G C FLG Missense_Mutation p.S2107C 0.19 possibly_damaging(0.7) TCGA-XF-A9T8-01 1 152282755 152282755 C G FLG Missense_Mutation p.G1536A 0.14 possibly_damaging(0.794) TCGA-XF-A9T8-01 1 152327684 152327684 G A FLG2 Nonsense_Mutation p.Q860* 0.17 TCGA-XF-A9T8-01 1 154072563 154072563 G C NUP210L Missense_Mutation p.L626V 0.19 tolerated(0.28) benign(0.019) TCGA-XF-A9T8-01 1 155210881 155210881 C T GBA Missense_Mutation p.R8K 0.18 tolerated_low_confidence(0.35) benign(0.001) TCGA-XF-A9T8-01 1 156933341 156933341 C G ARHGEF11 Missense_Mutation p.D337H 0.13 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T8-01 1 157660198 157660198 C T FCRL3 Missense_Mutation p.E513K 0.05 tolerated(0.12) benign(0.221) TCGA-XF-A9T8-01 1 158548928 158548928 G A OR10X1 Silent p.F254F 0.06 TCGA-XF-A9T8-01 1 158984714 158984714 C G IFI16 Missense_Mutation p.L82V 0.07 deleterious(0) probably_damaging(0.958) TCGA-XF-A9T8-01 1 158990177 158990177 G C IFI16 Missense_Mutation p.R340T 0.36 tolerated(1) possibly_damaging(0.801) TCGA-XF-A9T8-01 1 160163635 160163635 G C CASQ1 Missense_Mutation p.D155H 0.13 deleterious(0) probably_damaging(0.953) TCGA-XF-A9T8-01 1 160846471 160846471 G A ITLN1 Missense_Mutation p.L309F 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-XF-A9T8-01 1 161018599 161018599 C T ARHGAP30 Missense_Mutation p.G738R 0.14 tolerated_low_confidence(0.33) benign(0.01) TCGA-XF-A9T8-01 1 161163802 161163802 C G ADAMTS4 Missense_Mutation p.D491H 0.06 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 1 1650862 1650862 G A CDK11A Missense_Mutation p.P87L 0.17 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-XF-A9T8-01 1 169494094 169494094 G A F5 Silent p.I1923I 0.18 TCGA-XF-A9T8-01 1 169510104 169510104 C G F5 Missense_Mutation p.Q1408H 0.23 tolerated_low_confidence(0.15) benign(0.017) TCGA-XF-A9T8-01 1 172113732 172113732 G C DNM3 Intron 0.18 TCGA-XF-A9T8-01 1 17319020 17319020 C G ATP13A2 Silent p.V602V 0.20 TCGA-XF-A9T8-01 1 173886363 173886363 C G SERPINC1 Missense_Mutation p.G12A 0.20 tolerated_low_confidence(0.15) benign(0.003) TCGA-XF-A9T8-01 1 173947732 173947732 C G RC3H1 Missense_Mutation p.Q332H 0.15 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T8-01 1 175049448 175049448 G T TNN Nonsense_Mutation p.E312* 0.29 TCGA-XF-A9T8-01 1 176671771 176671771 T G PAPPA2 Missense_Mutation p.Y1089D 0.51 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 1 178442459 178442459 G C RASAL2 3'UTR 0.25 TCGA-XF-A9T8-01 1 179815353 179815353 G C TOR1AIP2 Silent p.L422L 0.32 TCGA-XF-A9T8-01 1 180461406 180461406 G C ACBD6 Missense_Mutation p.Q128E 0.28 tolerated(0.22) possibly_damaging(0.701) TCGA-XF-A9T8-01 1 180849374 180849374 G A XPR1 Silent p.K657K 0.20 TCGA-XF-A9T8-01 1 181024377 181024377 C G MR1 Missense_Mutation p.I334M 0.15 tolerated(0.26) benign(0.001) TCGA-XF-A9T8-01 1 183938560 183938560 C G COLGALT2 Missense_Mutation p.K225N 0.42 tolerated(0.22) benign(0.017) TCGA-XF-A9T8-01 1 183938596 183938596 C G COLGALT2 Missense_Mutation p.K213N 0.39 deleterious(0) benign(0.141) TCGA-XF-A9T8-01 1 184446658 184446658 C T C1orf21 Silent p.S5S 0.11 TCGA-XF-A9T8-01 1 185175868 185175868 G C SWT1 Missense_Mutation p.E649Q 0.08 deleterious(0) probably_damaging(0.948) TCGA-XF-A9T8-01 1 185956617 185956617 C G HMCN1 Missense_Mutation p.P997A 0.11 probably_damaging(0.998) TCGA-XF-A9T8-01 1 202302415 202302415 G C UBE2T Missense_Mutation p.Q112E 0.05 deleterious(0.02) probably_damaging(0.984) TCGA-XF-A9T8-01 1 20304519 20304519 C G PLA2G2A Missense_Mutation p.R94T 0.06 tolerated(0.53) benign(0.001) TCGA-XF-A9T8-01 1 207669698 207669698 C T CR1 Missense_Mutation p.A29V 0.21 deleterious_low_confidence(0) possibly_damaging(0.546) TCGA-XF-A9T8-01 1 2121157 2121158 CA - C1orf86 Frame_Shift_Del p.V178Dfs*? 0.18 TCGA-XF-A9T8-01 1 220364510 220364510 G C RAB3GAP2 Missense_Mutation p.Q463E 0.15 deleterious(0.02) possibly_damaging(0.885) TCGA-XF-A9T8-01 1 220440324 220440324 G C RAB3GAP2 Intron 0.10 TCGA-XF-A9T8-01 1 220921997 220921997 C T MARC2 Missense_Mutation p.R42C 0.85 deleterious(0.04) unknown(0) TCGA-XF-A9T8-01 1 226180135 226180135 C A SDE2 Nonsense_Mutation p.E162* 0.16 TCGA-XF-A9T8-01 1 230841752 230841752 A G AGT Missense_Mutation p.S351P 0.27 deleterious(0.02) benign(0.031) TCGA-XF-A9T8-01 1 231402031 231402031 G A GNPAT Silent p.L311L 0.15 TCGA-XF-A9T8-01 1 23233234 23233234 G C EPHB2 Silent p.L641L 0.18 TCGA-XF-A9T8-01 1 240256741 240256741 G C FMN2 Missense_Mutation p.K444N 0.20 unknown(0) TCGA-XF-A9T8-01 1 240656296 240656296 C T GREM2 Silent p.V160V 0.21 TCGA-XF-A9T8-01 1 242023908 242023908 C T EXO1 Silent p.F282F 0.17 TCGA-XF-A9T8-01 1 243716087 243716087 G A AKT3 Silent p.L369L 0.09 TCGA-XF-A9T8-01 1 26357081 26357081 C G EXTL1 Missense_Mutation p.L366V 0.12 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T8-01 1 26586208 26586208 C T CEP85 Missense_Mutation p.S419F 0.16 deleterious(0.03) possibly_damaging(0.459) TCGA-XF-A9T8-01 1 27087386 27087386 G A ARID1A Missense_Mutation p.E654K 0.20 unknown(0) TCGA-XF-A9T8-01 1 27220757 27220757 C G GPATCH3 Missense_Mutation p.D341H 0.09 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 1 29189401 29189401 G C OPRD1 Missense_Mutation p.S242T 0.18 deleterious(0.04) benign(0.002) TCGA-XF-A9T8-01 1 29475582 29475582 C G SRSF4 Missense_Mutation p.E275D 0.08 tolerated_low_confidence(0.49) benign(0.217) TCGA-XF-A9T8-01 1 29475690 29475690 C G SRSF4 Silent p.R239R 0.08 TCGA-XF-A9T8-01 1 3624168 3624168 C T TP73 Missense_Mutation p.S81L 0.14 deleterious(0.01) benign(0.148) TCGA-XF-A9T8-01 1 39752955 39752955 C T MACF1 Intron 0.25 TCGA-XF-A9T8-01 1 39918000 39918000 G A MACF1 Missense_Mutation p.R4805Q 0.20 probably_damaging(0.999) TCGA-XF-A9T8-01 1 40029381 40029381 G A PABPC4 Missense_Mutation p.R525C 0.32 deleterious(0.03) benign(0.049) TCGA-XF-A9T8-01 1 40668210 40668210 C G RLF Nonsense_Mutation p.S245* 0.14 TCGA-XF-A9T8-01 1 42645371 42645371 G A FOXJ3 3'UTR 0.36 TCGA-XF-A9T8-01 1 44137182 44137182 C G KDM4A Missense_Mutation p.S457C 0.25 deleterious(0.01) benign(0.109) TCGA-XF-A9T8-01 1 45250955 45250955 G C BEST4 Missense_Mutation p.S246C 0.21 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T8-01 1 46295205 46295205 G C MAST2 Missense_Mutation p.M140I 0.21 tolerated_low_confidence(0.06) benign(0.057) TCGA-XF-A9T8-01 1 47550566 47550566 C G CYP4Z1 Missense_Mutation p.L230V 0.15 tolerated(0.5) possibly_damaging(0.874) TCGA-XF-A9T8-01 1 4834503 4834503 C T AJAP1 Missense_Mutation p.R394W 0.20 deleterious(0) benign(0.14) TCGA-XF-A9T8-01 1 55175868 55175868 G T MROH7 3'UTR 0.29 TCGA-XF-A9T8-01 1 55319842 55319842 C A DHCR24 Missense_Mutation p.K362N 0.17 deleterious(0.05) possibly_damaging(0.456) TCGA-XF-A9T8-01 1 60456431 60456431 G C C1orf87 Missense_Mutation p.Q519E 0.22 tolerated(0.16) benign(0.008) TCGA-XF-A9T8-01 1 6285271 6285271 G A ICMT Nonsense_Mutation p.R242* 0.25 TCGA-XF-A9T8-01 1 67786024 67786024 C T IL12RB2 5'UTR 0.19 TCGA-XF-A9T8-01 1 70715728 70715728 G C SRSF11 Missense_Mutation p.R372S 0.14 deleterious(0) unknown(0) TCGA-XF-A9T8-01 1 76262775 76262775 C G MSH4 Silent p.L35L 0.27 TCGA-XF-A9T8-01 1 91406670 91406670 C T ZNF644 Missense_Mutation p.D81N 0.16 deleterious(0.04) benign(0.005) TCGA-XF-A9T8-01 1 94048270 94048270 G C BCAR3 Nonsense_Mutation p.S425* 0.24 TCGA-XF-A9T8-01 1 94884133 94884133 C A ABCD3 Silent p.L33L 0.33 TCGA-XF-A9T8-01 20 18022275 18022275 G C OVOL2 Silent p.L138L 0.20 TCGA-XF-A9T8-01 20 18297080 18297080 C T ZNF133 Nonsense_Mutation p.R528* 0.21 TCGA-XF-A9T8-01 20 2638598 2638598 G C NOP56 Missense_Mutation p.K481N 0.21 deleterious(0) benign(0.403) TCGA-XF-A9T8-01 20 3324344 3324344 G C C20orf194 Missense_Mutation p.S275C 0.15 deleterious(0) probably_damaging(0.946) TCGA-XF-A9T8-01 20 34092461 34092461 G C CEP250 Missense_Mutation p.E2088D 0.26 benign(0.205) TCGA-XF-A9T8-01 20 3543082 3543082 G A ATRN Missense_Mutation p.R536Q 0.26 tolerated(0.09) benign(0.073) TCGA-XF-A9T8-01 20 35690595 35690595 G A RBL1 Silent p.D325D 0.20 TCGA-XF-A9T8-01 20 37356749 37356749 G A SLC32A1 Missense_Mutation p.V349M 0.31 deleterious(0.01) possibly_damaging(0.64) TCGA-XF-A9T8-01 20 43135594 43135594 G A SERINC3 Silent p.I219I 0.19 TCGA-XF-A9T8-01 20 44170629 44170629 G C EPPIN Intron 0.27 TCGA-XF-A9T8-01 20 46294034 46294034 C G SULF2 Missense_Mutation p.E636Q 0.19 deleterious(0.05) probably_damaging(0.974) TCGA-XF-A9T8-01 20 47990230 47990230 C T KCNB1 Missense_Mutation p.E623K 0.29 tolerated_low_confidence(0.36) benign(0.124) TCGA-XF-A9T8-01 20 61510987 61510987 G A DIDO1 Silent p.G2107G 0.25 TCGA-XF-A9T8-01 21 11047567 11047567 C T BAGE2 RNA 0.03 TCGA-XF-A9T8-01 21 26966216 26966216 G C MRPL39 Silent p.V252V 0.19 TCGA-XF-A9T8-01 21 32513513 32513513 C G TIAM1 Missense_Mutation p.E1233Q 0.20 deleterious(0) possibly_damaging(0.506) TCGA-XF-A9T8-01 21 34067402 34067402 C T SYNJ1 Missense_Mutation p.D263N 0.32 deleterious(0) possibly_damaging(0.907) TCGA-XF-A9T8-01 21 35468986 35468986 G C SLC5A3 Missense_Mutation p.D497H 0.18 tolerated(0.52) benign(0.39) TCGA-XF-A9T8-01 21 36259161 36259161 C G RUNX1 Missense_Mutation p.K110N 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 21 37665798 37665798 G C DOPEY2 Missense_Mutation p.D2276H 0.29 deleterious(0.05) benign(0.322) TCGA-XF-A9T8-01 21 38084900 38084900 C T SIM2 Missense_Mutation p.S109F 0.28 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T8-01 22 19839740 19839740 G C C22orf29 Missense_Mutation p.I15M 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-XF-A9T8-01 22 22730594 22730594 C G IGLV5-45 Missense_Mutation p.S30C 0.16 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T8-01 22 23524111 23524111 G C BCR Missense_Mutation p.E322Q 0.41 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-XF-A9T8-01 22 24086120 24086120 C T ZNF70 Missense_Mutation p.R403Q 0.20 deleterious(0.04) benign(0.173) TCGA-XF-A9T8-01 22 31859710 31859710 C G EIF4ENIF1 Missense_Mutation p.R181T 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-XF-A9T8-01 22 31957369 31957369 C G SFI1 Silent p.L252L 0.15 TCGA-XF-A9T8-01 22 36122624 36122624 C T APOL5 Missense_Mutation p.S170L 0.08 tolerated(0.1) possibly_damaging(0.463) TCGA-XF-A9T8-01 22 39966823 39966823 C T CACNA1I Silent p.T22T 0.27 TCGA-XF-A9T8-01 22 40801808 40801808 C G SGSM3 Nonsense_Mutation p.Y258* 0.42 TCGA-XF-A9T8-01 22 41626226 41626226 G T L3MBTL2 Nonsense_Mutation p.E697* 0.31 TCGA-XF-A9T8-01 22 41650329 41650329 G A RANGAP1 Silent p.L415L 0.20 TCGA-XF-A9T8-01 22 42263176 42263176 C G SREBF2 Missense_Mutation p.Q144E 0.17 tolerated(0.65) benign(0.069) TCGA-XF-A9T8-01 2 100623091 100623091 C G AFF3 Intron 0.31 TCGA-XF-A9T8-01 2 10095215 10095215 C G GRHL1 Silent p.L64L 0.16 TCGA-XF-A9T8-01 2 11758537 11758537 C T GREB1 Missense_Mutation p.P1179L 0.44 tolerated(0.52) benign(0.001) TCGA-XF-A9T8-01 2 11780603 11780603 G A GREB1 3'UTR 0.23 TCGA-XF-A9T8-01 2 11780624 11780624 C A GREB1 3'UTR 0.24 TCGA-XF-A9T8-01 2 121726308 121726308 C T GLI2 Missense_Mutation p.P221L 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 2 128066254 128066254 G C MAP3K2 Nonsense_Mutation p.S514* 0.27 TCGA-XF-A9T8-01 2 128397642 128397642 C G LIMS2 Intron 0.16 TCGA-XF-A9T8-01 2 133540510 133540510 C A NCKAP5 Nonsense_Mutation p.E1292* 0.21 TCGA-XF-A9T8-01 2 135739074 135739074 G A MAP3K19 Silent p.L1079L 0.16 TCGA-XF-A9T8-01 2 135965399 135965399 G C ZRANB3 Missense_Mutation p.L872V 0.13 tolerated(0.49) benign(0.02) TCGA-XF-A9T8-01 2 141116408 141116408 C T LRP1B Missense_Mutation p.D3747N 0.21 possibly_damaging(0.539) TCGA-XF-A9T8-01 2 141215068 141215068 C G LRP1B Missense_Mutation p.D3260H 0.20 possibly_damaging(0.861) TCGA-XF-A9T8-01 2 145147383 145147383 C G ZEB2 Missense_Mutation p.E1094Q 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-XF-A9T8-01 2 152109296 152109296 A G RBM43 Silent p.S96S 0.17 TCGA-XF-A9T8-01 2 152320447 152320447 A C RIF1 Missense_Mutation p.E1471D 0.24 tolerated(0.21) possibly_damaging(0.665) TCGA-XF-A9T8-01 2 152404175 152404175 G C NEB Silent p.V6745V 0.35 TCGA-XF-A9T8-01 2 152584365 152584365 G T NEB Nonsense_Mutation p.S45* 0.20 TCGA-XF-A9T8-01 2 153537793 153537793 C G PRPF40A Missense_Mutation p.E135Q 0.08 tolerated(0.44) possibly_damaging(0.728) TCGA-XF-A9T8-01 2 155711634 155711634 C T KCNJ3 Nonsense_Mutation p.R439* 0.19 TCGA-XF-A9T8-01 2 158978037 158978037 G A UPP2 Missense_Mutation p.E248K 0.27 tolerated(0.29) benign(0.012) TCGA-XF-A9T8-01 2 158978038 158978038 A T UPP2 Missense_Mutation p.E248V 0.27 deleterious(0.05) benign(0.292) TCGA-XF-A9T8-01 2 160585619 160585619 G A MARCH7 Missense_Mutation p.R29K 0.12 deleterious(0.05) probably_damaging(0.983) TCGA-XF-A9T8-01 2 165947586 165947586 C G SCN3A Missense_Mutation p.E1693Q 0.21 tolerated(0.38) probably_damaging(0.998) TCGA-XF-A9T8-01 2 165948846 165948846 C T SCN3A Silent p.L1575L 0.18 TCGA-XF-A9T8-01 2 170097642 170097642 C T LRP2 Missense_Mutation p.D1301N 0.16 probably_damaging(1) TCGA-XF-A9T8-01 2 170150751 170150751 C G LRP2 Missense_Mutation p.E187Q 0.33 benign(0.05) TCGA-XF-A9T8-01 2 170175357 170175357 C A LRP2 Missense_Mutation p.Q75H 0.14 benign(0.008) TCGA-XF-A9T8-01 2 170885907 170885907 C G UBR3 Missense_Mutation p.S1502C 0.13 deleterious(0.04) benign(0.417) TCGA-XF-A9T8-01 2 179400511 179400511 C T TTN Missense_Mutation p.E33611K 0.17 TCGA-XF-A9T8-01 2 179469679 179469679 G C TTN Intron 0.18 TCGA-XF-A9T8-01 2 179593656 179593656 G A TTN Missense_Mutation p.S6370L 0.38 TCGA-XF-A9T8-01 2 179658248 179658248 C G TTN Missense_Mutation p.K473N 0.16 TCGA-XF-A9T8-01 2 179981401 179981401 A G SESTD1 Silent p.V547V 0.19 TCGA-XF-A9T8-01 2 187692909 187692909 C G ZSWIM2 Missense_Mutation p.K568N 0.24 tolerated(0.18) benign(0.079) TCGA-XF-A9T8-01 2 1891341 1891341 C G MYT1L Missense_Mutation p.R852T 0.06 deleterious(0.01) possibly_damaging(0.669) TCGA-XF-A9T8-01 2 196722155 196722155 G C DNAH7 Missense_Mutation p.S2787C 0.22 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 2 203071986 203071986 G C SUMO1 Nonsense_Mutation p.S99* 0.21 TCGA-XF-A9T8-01 2 207026170 207026170 G C EEF1B2 Missense_Mutation p.D102H 0.15 deleterious(0) probably_damaging(0.988) TCGA-XF-A9T8-01 2 21238404 21238404 C A APOB Nonsense_Mutation p.E1116* 0.26 TCGA-XF-A9T8-01 2 212543806 212543806 G C ERBB4 Missense_Mutation p.I531M 0.28 deleterious(0.05) benign(0.004) TCGA-XF-A9T8-01 2 220107897 220107897 C T GLB1L Missense_Mutation p.R71Q 0.34 tolerated(0.2) benign(0.025) TCGA-XF-A9T8-01 2 220172524 220172524 G A PTPRN Silent p.V52V 0.23 TCGA-XF-A9T8-01 2 220368919 220368919 C G GMPPA Missense_Mutation p.Q202E 0.24 tolerated(0.39) benign(0.009) TCGA-XF-A9T8-01 2 232100046 232100046 C G ARMC9 Silent p.V244V 0.39 TCGA-XF-A9T8-01 2 232262625 232262625 G A B3GNT7 Silent p.P65P 0.20 TCGA-XF-A9T8-01 2 233321360 233321360 G A ALPI Silent p.E85E 0.24 TCGA-XF-A9T8-01 2 233422658 233422658 G C EIF4E2 Missense_Mutation p.R67T 0.27 deleterious(0) probably_damaging(0.978) TCGA-XF-A9T8-01 2 234243683 234243683 G C SAG Missense_Mutation p.R294S 0.17 deleterious(0) possibly_damaging(0.877) TCGA-XF-A9T8-01 2 24222660 24222660 G C UBXN2A Missense_Mutation p.E235Q 0.23 tolerated(0.06) probably_damaging(1) TCGA-XF-A9T8-01 2 24933898 24933898 G A NCOA1 Silent p.A839A 0.21 TCGA-XF-A9T8-01 2 25016769 25016769 A C CENPO 5'UTR 0.19 TCGA-XF-A9T8-01 2 25038510 25038510 C G CENPO Missense_Mutation p.P160R 0.18 deleterious(0) probably_damaging(0.996) TCGA-XF-A9T8-01 2 27804562 27804562 G A C2orf16 Missense_Mutation p.R1708K 0.19 tolerated(0.3) benign(0.321) TCGA-XF-A9T8-01 2 55543135 55543135 C G CCDC88A Missense_Mutation p.E1287Q 0.17 tolerated(0.19) probably_damaging(0.999) TCGA-XF-A9T8-01 2 72360154 72360154 C G CYP26B1 Missense_Mutation p.D382H 0.11 deleterious(0) probably_damaging(0.982) TCGA-XF-A9T8-01 2 89157152 89157152 C T IGKC Missense_Mutation p.E16K 0.20 deleterious(0.02) benign(0.122) TCGA-XF-A9T8-01 2 8926117 8926117 G A KIDINS220 Silent p.V661V 0.25 TCGA-XF-A9T8-01 3 100949913 100949913 T C IMPG2 Missense_Mutation p.I1104V 0.13 deleterious(0.02) benign(0.053) TCGA-XF-A9T8-01 3 10290962 10290962 C G TATDN2 Silent p.L26L 0.29 TCGA-XF-A9T8-01 3 10291002 10291002 C G TATDN2 Missense_Mutation p.Q40E 0.27 tolerated_low_confidence(0.82) benign(0.015) TCGA-XF-A9T8-01 3 10379904 10379904 C T ATP2B2 Missense_Mutation p.G1126S 0.15 deleterious(0.03) probably_damaging(1) TCGA-XF-A9T8-01 3 105377987 105377987 C G CBLB Missense_Mutation p.E926Q 0.14 tolerated_low_confidence(0.2) benign(0.255) TCGA-XF-A9T8-01 3 107497231 107497231 G C BBX Missense_Mutation p.D690H 0.35 deleterious(0) probably_damaging(0.914) TCGA-XF-A9T8-01 3 11301018 11301018 C G HRH1 Missense_Mutation p.L99V 0.05 tolerated(1) benign(0.401) TCGA-XF-A9T8-01 3 119256241 119256241 G C CD80 Missense_Mutation p.S148C 0.15 deleterious(0) possibly_damaging(0.608) TCGA-XF-A9T8-01 3 121489208 121489208 C T IQCB1 Missense_Mutation p.G594E 0.08 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 3 123348513 123348513 A C MYLK Intron 0.46 TCGA-XF-A9T8-01 3 124175549 124175549 G A KALRN Silent p.E1274E 0.17 TCGA-XF-A9T8-01 3 12458312 12458312 T C PPARG Missense_Mutation p.F310S 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 3 124739840 124739840 G A HEG1 Silent p.L350L 0.18 TCGA-XF-A9T8-01 3 125257297 125257297 G A OSBPL11 Silent p.S674S 0.13 TCGA-XF-A9T8-01 3 127801372 127801372 C A RUVBL1 Nonsense_Mutation p.E389* 0.08 TCGA-XF-A9T8-01 3 128199904 128199904 G A GATA2 Silent p.F467F 0.35 TCGA-XF-A9T8-01 3 129389575 129389575 C T TMCC1 Missense_Mutation p.R370K 0.11 tolerated(0.1) benign(0.124) TCGA-XF-A9T8-01 3 129389916 129389916 G A TMCC1 Silent p.D256D 0.17 TCGA-XF-A9T8-01 3 12976945 12976945 C T IQSEC1 Intron 0.19 TCGA-XF-A9T8-01 3 129811026 129811026 G A RP11-93K22.13 Intron 0.11 TCGA-XF-A9T8-01 3 132175666 132175666 C G DNAJC13 Missense_Mutation p.Q447E 0.15 tolerated(0.88) benign(0.015) TCGA-XF-A9T8-01 3 134278167 134278167 C G CEP63 Missense_Mutation p.L617V 0.05 deleterious(0.02) benign(0.033) TCGA-XF-A9T8-01 3 138665349 138665349 C T FOXL2 Silent p.E72E 0.15 TCGA-XF-A9T8-01 3 142396880 142396880 G A PLS1 Missense_Mutation p.M168I 0.35 tolerated(0.18) benign(0.006) TCGA-XF-A9T8-01 3 149192627 149192627 G C TM4SF4 5'UTR 0.12 TCGA-XF-A9T8-01 3 158310291 158310291 G C MLF1 Missense_Mutation p.R55T 0.06 tolerated(0.09) possibly_damaging(0.836) TCGA-XF-A9T8-01 3 160143888 160143888 G C SMC4 Missense_Mutation p.L835F 0.07 deleterious(0) possibly_damaging(0.616) TCGA-XF-A9T8-01 3 168834378 168834378 C T MECOM Missense_Mutation p.E305K 0.12 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T8-01 3 170715650 170715650 C T SLC2A2 3'UTR 0.11 TCGA-XF-A9T8-01 3 172052792 172052792 C T FNDC3B Missense_Mutation p.T567M 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 3 172428787 172428787 C G NCEH1 Silent p.P28P 0.13 TCGA-XF-A9T8-01 3 17446432 17446432 G C TBC1D5 Missense_Mutation p.Q100E 0.09 tolerated(1) benign(0.015) TCGA-XF-A9T8-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.15 deleterious(0.02) probably_damaging(0.959) TCGA-XF-A9T8-01 3 179051361 179051361 C G ZNF639 Silent p.L203L 0.14 TCGA-XF-A9T8-01 3 183585733 183585733 G A PARL Missense_Mutation p.P81S 0.32 tolerated(0.09) benign(0.186) TCGA-XF-A9T8-01 3 183707101 183707101 G A ABCC5 Missense_Mutation p.S67F 0.14 deleterious_low_confidence(0.01) benign(0.017) TCGA-XF-A9T8-01 3 184633212 184633212 C T VPS8 Missense_Mutation p.R778W 0.17 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T8-01 3 185198096 185198096 G C MAP3K13 Missense_Mutation p.E860Q 0.27 deleterious_low_confidence(0) possibly_damaging(0.761) TCGA-XF-A9T8-01 3 186793465 186793465 G A ST6GAL1 Silent p.T365T 0.17 TCGA-XF-A9T8-01 3 187386811 187386811 G C SST 3'UTR 0.09 TCGA-XF-A9T8-01 3 194080221 194080221 G C LRRC15 Missense_Mutation p.L524V 0.13 tolerated(0.29) possibly_damaging(0.856) TCGA-XF-A9T8-01 3 194371635 194371635 C G LSG1 Missense_Mutation p.R465T 0.53 deleterious(0) possibly_damaging(0.883) TCGA-XF-A9T8-01 3 196387289 196387289 C G NRROS Missense_Mutation p.H259D 0.06 tolerated(0.26) benign(0.065) TCGA-XF-A9T8-01 3 196509551 196509551 C G PAK2 Missense_Mutation p.P12A 0.07 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-XF-A9T8-01 3 20178502 20178502 C T KAT2B Silent p.L606L 0.17 TCGA-XF-A9T8-01 3 32180162 32180162 C G GPD1L Missense_Mutation p.I103M 0.21 deleterious(0.03) possibly_damaging(0.506) TCGA-XF-A9T8-01 3 33612275 33612275 C T CLASP2 Missense_Mutation p.E912K 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-XF-A9T8-01 3 38137415 38137415 G C DLEC1 Missense_Mutation p.E717Q 0.25 tolerated(0.08) benign(0.236) TCGA-XF-A9T8-01 3 39306963 39306963 C T CX3CR1 Silent p.T378T 0.29 TCGA-XF-A9T8-01 3 43381800 43381800 G A SNRK Silent p.Q251Q 0.18 TCGA-XF-A9T8-01 3 43381978 43381978 G A SNRK Missense_Mutation p.D311N 0.11 deleterious(0.02) possibly_damaging(0.597) TCGA-XF-A9T8-01 3 43381990 43381990 G C SNRK Missense_Mutation p.E315Q 0.19 tolerated(0.12) benign(0.028) TCGA-XF-A9T8-01 3 44905724 44905724 G A TMEM42 Silent p.V76V 0.21 TCGA-XF-A9T8-01 3 45879475 45879475 C G LZTFL1 Missense_Mutation p.K24N 0.15 tolerated(0.12) benign(0.108) TCGA-XF-A9T8-01 3 47058588 47058588 C T SETD2 Missense_Mutation p.E2564K 0.26 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-XF-A9T8-01 3 48608565 48608565 G A COL7A1 Missense_Mutation p.S2378F 0.26 probably_damaging(0.949) TCGA-XF-A9T8-01 3 48616933 48616933 G A COL7A1 Missense_Mutation p.R1751W 0.13 unknown(0) TCGA-XF-A9T8-01 3 49282112 49282112 C G CCDC36 Missense_Mutation p.L160V 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-XF-A9T8-01 3 49756422 49756422 G C AMIGO3 Silent p.L159L 0.22 TCGA-XF-A9T8-01 3 49898242 49898242 C G CAMKV Missense_Mutation p.D228H 0.21 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-XF-A9T8-01 3 5024862 5024862 G C BHLHE40 Missense_Mutation p.D242H 0.11 deleterious(0.02) probably_damaging(1) TCGA-XF-A9T8-01 3 50396206 50396206 C A TMEM115 Nonsense_Mutation p.E97* 0.26 TCGA-XF-A9T8-01 3 51679710 51679710 G A RAD54L2 Silent p.L920L 0.29 TCGA-XF-A9T8-01 3 53212465 53212465 C T PRKCD Silent p.F9F 0.39 TCGA-XF-A9T8-01 3 56026147 56026147 C T ERC2 Silent p.E731E 0.20 TCGA-XF-A9T8-01 3 58141727 58141727 C T FLNB Silent p.I2302I 0.18 TCGA-XF-A9T8-01 3 63976462 63976462 G C ATXN7 Missense_Mutation p.D537H 0.22 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 3 64004503 64004503 G C PSMD6 Silent p.L236L 0.24 TCGA-XF-A9T8-01 3 7494394 7494394 G A GRM7 Missense_Mutation p.M425I 0.17 deleterious(0.01) benign(0.366) TCGA-XF-A9T8-01 3 81810576 81810576 G C GBE1 Silent p.L31L 0.14 TCGA-XF-A9T8-01 3 86996163 86996163 G C VGLL3 3'UTR 0.26 TCGA-XF-A9T8-01 3 9426307 9426307 C G THUMPD3 Missense_Mutation p.Q487E 0.23 tolerated(0.73) benign(0.002) TCGA-XF-A9T8-01 3 9515119 9515119 C T SETD5 Missense_Mutation p.P1132L 0.14 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T8-01 3 9516140 9516140 C T SETD5 Missense_Mutation p.P1169S 0.23 tolerated(0.06) probably_damaging(0.998) TCGA-XF-A9T8-01 3 98304446 98304446 G C CPOX Missense_Mutation p.I337M 0.07 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 4 110897215 110897215 C G EGF Missense_Mutation p.S626C 0.17 deleterious(0.02) possibly_damaging(0.678) TCGA-XF-A9T8-01 4 119163264 119163264 C G NDST3 Missense_Mutation p.L787V 0.22 deleterious(0) probably_damaging(0.992) TCGA-XF-A9T8-01 4 123227107 123227107 C T KIAA1109 Nonsense_Mutation p.R3250* 0.08 TCGA-XF-A9T8-01 4 129192450 129192450 G A PGRMC2 3'UTR 0.11 TCGA-XF-A9T8-01 4 134072396 134072396 G A PCDH10 Silent p.V367V 0.23 TCGA-XF-A9T8-01 4 13603177 13603177 C T BOD1L1 Missense_Mutation p.D1783N 0.17 probably_damaging(1) TCGA-XF-A9T8-01 4 151773060 151773060 G C LRBA Missense_Mutation p.Q1268E 0.37 tolerated_low_confidence(0.23) benign(0.031) TCGA-XF-A9T8-01 4 153273859 153273859 C T FBXW7 Intron 0.30 TCGA-XF-A9T8-01 4 155157229 155157229 C T DCHS2 Missense_Mutation p.D2404N 0.07 tolerated(0.15) possibly_damaging(0.906) TCGA-XF-A9T8-01 4 169336860 169336860 G A DDX60L Silent p.L939L 0.18 TCGA-XF-A9T8-01 4 169819676 169819676 C G PALLD Silent p.L761L 0.19 TCGA-XF-A9T8-01 4 178274579 178274579 G A NEIL3 Missense_Mutation p.G386E 0.25 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 4 178363459 178363459 G C AGA Missense_Mutation p.S24C 0.21 deleterious(0.05) benign(0.013) TCGA-XF-A9T8-01 4 186180201 186180201 G C SNX25 Silent p.L74L 0.16 TCGA-XF-A9T8-01 4 186339602 186339602 G A UFSP2 Missense_Mutation p.S109L 0.12 tolerated(0.35) benign(0.021) TCGA-XF-A9T8-01 4 187005261 187005261 C G TLR3 Missense_Mutation p.I807M 0.31 tolerated(0.49) possibly_damaging(0.68) TCGA-XF-A9T8-01 4 187628101 187628101 G A FAT1 Nonsense_Mutation p.Q961* 0.12 TCGA-XF-A9T8-01 4 22422440 22422440 G A GPR125 Intron 0.11 TCGA-XF-A9T8-01 4 24578092 24578092 G C DHX15 Nonsense_Mutation p.S94* 0.17 TCGA-XF-A9T8-01 4 25391798 25391798 G C ANAPC4 Missense_Mutation p.E186Q 0.26 tolerated(0.28) probably_damaging(0.959) TCGA-XF-A9T8-01 4 25677780 25677780 C T SLC34A2 Silent p.F494F 0.24 TCGA-XF-A9T8-01 4 57797247 57797247 G A REST Silent p.Q741Q 0.23 TCGA-XF-A9T8-01 4 57839436 57839436 C G NOA1 Missense_Mutation p.D465H 0.06 deleterious(0.02) probably_damaging(0.971) TCGA-XF-A9T8-01 4 68511724 68511724 A T UBA6 Missense_Mutation p.Y443N 0.31 deleterious(0) probably_damaging(0.947) TCGA-XF-A9T8-01 4 68777186 68777186 C G TMPRSS11A Silent p.L380L 0.26 TCGA-XF-A9T8-01 4 70361310 70361310 G A UGT2B4 Silent p.I90I 0.14 TCGA-XF-A9T8-01 4 77230462 77230462 C G FAM47E-STBD1 Missense_Mutation p.S129C 0.18 deleterious(0) probably_damaging(0.991) TCGA-XF-A9T8-01 4 7795489 7795489 G C AFAP1 Missense_Mutation p.T444R 0.16 deleterious(0.01) possibly_damaging(0.774) TCGA-XF-A9T8-01 4 82366753 82366753 C A RASGEF1B Missense_Mutation p.M285I 0.18 tolerated(0.25) benign(0.002) TCGA-XF-A9T8-01 4 83795788 83795788 G C SEC31A Missense_Mutation p.I205M 0.18 deleterious(0) benign(0.269) TCGA-XF-A9T8-01 4 844822 844822 G C GAK Missense_Mutation p.Q1187E 0.25 deleterious(0.04) benign(0.018) TCGA-XF-A9T8-01 4 84519201 84519201 C T AGPAT9 Intron 0.25 TCGA-XF-A9T8-01 4 88106495 88106495 C T KLHL8 Missense_Mutation p.E225K 0.22 tolerated(0.47) benign(0.056) TCGA-XF-A9T8-01 4 88106561 88106561 C T KLHL8 Missense_Mutation p.E203K 0.20 deleterious(0.01) possibly_damaging(0.744) TCGA-XF-A9T8-01 5 111497279 111497279 G C EPB41L4A 3'Flank 0.28 TCGA-XF-A9T8-01 5 112176962 112176962 G C APC Missense_Mutation p.E1891Q 0.06 benign(0.306) TCGA-XF-A9T8-01 5 118482547 118482547 G T DMXL1 Missense_Mutation p.G862V 0.25 tolerated(0.15) benign(0.06) TCGA-XF-A9T8-01 5 1239639 1239639 C T SLC6A18 Silent p.F269F 0.20 TCGA-XF-A9T8-01 5 131323819 131323819 G A ACSL6 Silent p.L251L 0.19 TCGA-XF-A9T8-01 5 140308233 140308233 G A PCDHAC1 Missense_Mutation p.E586K 0.19 tolerated(0.29) benign(0.424) TCGA-XF-A9T8-01 5 140559515 140559515 C T PCDHB8 Missense_Mutation p.R634C 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-A9T8-01 5 149618304 149618304 G A CAMK2A Missense_Mutation p.S342L 0.28 deleterious_low_confidence(0) benign(0.002) TCGA-XF-A9T8-01 5 150584958 150584958 C A CCDC69 Intron 0.15 TCGA-XF-A9T8-01 5 153857170 153857170 G C HAND1 Missense_Mutation p.I133M 0.24 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 5 160753407 160753407 G A GABRB2 Missense_Mutation p.R387W 0.17 deleterious(0.02) benign(0.206) TCGA-XF-A9T8-01 5 161322788 161322788 T C GABRA1 Missense_Mutation p.F325L 0.18 deleterious(0.03) probably_damaging(0.973) TCGA-XF-A9T8-01 5 163635 163635 G A PLEKHG4B Missense_Mutation p.E794K 0.44 tolerated(0.14) benign(0.078) TCGA-XF-A9T8-01 5 170380643 170380643 G C RANBP17 Missense_Mutation p.G504A 0.07 tolerated(0.1) benign(0.011) TCGA-XF-A9T8-01 5 170380672 170380672 G T RANBP17 Nonsense_Mutation p.E514* 0.09 TCGA-XF-A9T8-01 5 179546350 179546350 G T RASGEF1C Silent p.I301I 0.32 TCGA-XF-A9T8-01 5 180048837 180048837 G C FLT4 Silent p.L575L 0.25 TCGA-XF-A9T8-01 5 32276800 32276800 G A MTMR12 Missense_Mutation p.H44Y 0.07 tolerated(1) benign(0.333) TCGA-XF-A9T8-01 5 37165751 37165751 C G C5orf42 Missense_Mutation p.E2475Q 0.14 tolerated(0.39) benign(0.245) TCGA-XF-A9T8-01 5 41055864 41055864 C G MROH2B Missense_Mutation p.R338T 0.22 deleterious(0) benign(0.223) TCGA-XF-A9T8-01 5 43161417 43161417 G C ZNF131 Missense_Mutation p.K146N 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9T8-01 5 476392 476392 G A SLC9A3 Silent p.F664F 0.24 TCGA-XF-A9T8-01 5 50073937 50073937 C T PARP8 Silent p.L185L 0.28 TCGA-XF-A9T8-01 5 50685712 50685712 G C ISL1 Missense_Mutation p.K237N 0.33 deleterious(0) probably_damaging(0.993) TCGA-XF-A9T8-01 5 52404443 52404443 C G MOCS2 5'UTR 0.20 TCGA-XF-A9T8-01 5 54603428 54603428 G C DHX29 5'UTR 0.23 TCGA-XF-A9T8-01 5 54649077 54649077 G C SKIV2L2 Missense_Mutation p.D505H 0.22 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 5 56171087 56171087 C T MAP3K1 Silent p.L639L 0.20 TCGA-XF-A9T8-01 5 61694367 61694367 G C DIMT1 Missense_Mutation p.F139L 0.19 deleterious(0) probably_damaging(0.985) TCGA-XF-A9T8-01 5 72359714 72359714 G A FCHO2 Silent p.P464P 0.19 TCGA-XF-A9T8-01 5 79034076 79034076 G A CMYA5 Missense_Mutation p.G3163E 0.19 benign(0.013) TCGA-XF-A9T8-01 5 79751510 79751510 G T ZFYVE16 Splice_Site p.X1203_splice 0.16 TCGA-XF-A9T8-01 5 80681642 80681642 T A ACOT12 Missense_Mutation p.E44V 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 5 80681643 80681643 C G ACOT12 Missense_Mutation p.E44Q 0.12 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 5 82835730 82835730 G A VCAN Missense_Mutation p.R2303K 0.12 tolerated(0.93) benign(0.076) TCGA-XF-A9T8-01 5 887482 887482 C T BRD9 Missense_Mutation p.M237I 0.21 deleterious(0.01) benign(0.057) TCGA-XF-A9T8-01 5 98217734 98217734 G C CHD1 Missense_Mutation p.Q938E 0.15 deleterious(0) probably_damaging(0.962) TCGA-XF-A9T8-01 5 98218870 98218872 AAC - CHD1 In_Frame_Del p.V880del 0.31 TCGA-XF-A9T8-01 6 110301403 110301403 G A GPR6 Silent p.%3D 0.23 TCGA-XF-A9T8-01 6 110421781 110421781 C T WASF1 Missense_Mutation p.E542K 0.18 deleterious(0) probably_damaging(0.98) TCGA-XF-A9T8-01 6 116265446 116265446 G C FRK Missense_Mutation p.I367M 0.15 tolerated(0.1) benign(0.411) TCGA-XF-A9T8-01 6 12125927 12125927 G A HIVEP1 Missense_Mutation p.D1967N 0.25 tolerated(0.32) benign(0.032) TCGA-XF-A9T8-01 6 127797104 127797104 G C SOGA3 Missense_Mutation p.S689R 0.18 tolerated(0.32) benign(0.289) TCGA-XF-A9T8-01 6 131926586 131926586 C T MED23 Missense_Mutation p.M469I 0.15 tolerated(0.15) benign(0.174) TCGA-XF-A9T8-01 6 131926605 131926605 C G MED23 Missense_Mutation p.R463T 0.12 tolerated(0.61) probably_damaging(0.994) TCGA-XF-A9T8-01 6 13620485 13620485 G C NOL7 Silent p.L182L 0.07 TCGA-XF-A9T8-01 6 136596746 136596746 A T BCLAF1 Silent p.I592I 0.09 TCGA-XF-A9T8-01 6 144183372 144183372 C G LTV1 Missense_Mutation p.S352C 0.11 deleterious(0) probably_damaging(0.997) TCGA-XF-A9T8-01 6 152552568 152552568 C G SYNE1 Missense_Mutation p.M6999I 0.22 benign(0.394) TCGA-XF-A9T8-01 6 152787177 152787177 C T SYNE1 Missense_Mutation p.E557K 0.16 probably_damaging(0.956) TCGA-XF-A9T8-01 6 158922810 158922810 G A TULP4 Silent p.Q705Q 0.23 TCGA-XF-A9T8-01 6 159682278 159682278 C T FNDC1 Missense_Mutation p.S1744L 0.18 deleterious(0) probably_damaging(0.914) TCGA-XF-A9T8-01 6 16306794 16306794 G C ATXN1 Silent p.L738L 0.16 TCGA-XF-A9T8-01 6 165746585 165746585 G C PDE10A Missense_Mutation p.R767G 0.14 deleterious(0.03) benign(0.109) TCGA-XF-A9T8-01 6 17837139 17837139 C T KIF13A Silent p.E375E 0.18 TCGA-XF-A9T8-01 6 18122786 18122786 C G NHLRC1 Missense_Mutation p.E18Q 0.15 tolerated(0.06) possibly_damaging(0.831) TCGA-XF-A9T8-01 6 20402595 20402595 C T E2F3 Silent p.F44F 0.25 TCGA-XF-A9T8-01 6 26056283 26056283 C T HIST1H1C Missense_Mutation p.G125E 0.16 deleterious(0.01) unknown(0) TCGA-XF-A9T8-01 6 27114509 27114509 C T HIST1H2BK Silent p.Q23Q 0.10 TCGA-XF-A9T8-01 6 27420074 27420074 C G ZNF184 Missense_Mutation p.E422Q 0.19 tolerated(0.1) probably_damaging(0.97) TCGA-XF-A9T8-01 6 27839706 27839706 G A HIST1H3I Missense_Mutation p.R130C 0.12 tolerated_low_confidence(0.06) possibly_damaging(0.765) TCGA-XF-A9T8-01 6 28201012 28201012 G A ZSCAN9 3'UTR 0.10 TCGA-XF-A9T8-01 6 2948561 2948561 G C SERPINB6 Missense_Mutation p.L368V 0.22 deleterious(0.02) possibly_damaging(0.651) TCGA-XF-A9T8-01 6 30883179 30883179 G T VARS2 Missense_Mutation p.A141S 0.21 tolerated(0.26) benign(0.166) TCGA-XF-A9T8-01 6 32036356 32036356 C T TNXB Missense_Mutation p.E2011K 0.18 benign(0.31) TCGA-XF-A9T8-01 6 32050000 32050000 C T RNA5SP206 5'Flank 0.29 TCGA-XF-A9T8-01 6 32942477 32942477 C G BRD2 Missense_Mutation p.L90V 0.23 tolerated(0.06) probably_damaging(0.989) TCGA-XF-A9T8-01 6 33289517 33289517 C G DAXX Missense_Mutation p.E62D 0.21 tolerated(0.06) benign(0.054) TCGA-XF-A9T8-01 6 36438031 36438031 G A KCTD20 Missense_Mutation p.E53K 0.11 tolerated_low_confidence(0.06) benign(0.01) TCGA-XF-A9T8-01 6 4126371 4126371 C T ECI2 Silent p.L224L 0.17 TCGA-XF-A9T8-01 6 42147033 42147033 C G GUCA1A Silent p.L166L 0.21 TCGA-XF-A9T8-01 6 42975936 42975936 C G PPP2R5D Intron 0.17 TCGA-XF-A9T8-01 6 52761523 52761523 C G GSTA3 3'UTR 0.17 TCGA-XF-A9T8-01 6 553855 553855 G A EXOC2 Missense_Mutation p.S707L 0.22 tolerated(0.36) benign(0.014) TCGA-XF-A9T8-01 6 7583213 7583213 C T DSP Silent p.I1906I 0.16 TCGA-XF-A9T8-01 6 7583435 7583435 C G DSP Silent p.L1980L 0.17 TCGA-XF-A9T8-01 6 7583509 7583509 C T DSP Missense_Mutation p.A2005V 0.20 benign(0.342) TCGA-XF-A9T8-01 6 7583532 7583532 C T DSP Missense_Mutation p.R2013W 0.16 possibly_damaging(0.895) TCGA-XF-A9T8-01 6 7583545 7583545 C T DSP Missense_Mutation p.S2017F 0.21 benign(0.133) TCGA-XF-A9T8-01 6 7583774 7583774 C G DSP Missense_Mutation p.I2093M 0.18 benign(0.054) TCGA-XF-A9T8-01 6 7584134 7584134 C T DSP Silent p.I2213I 0.11 TCGA-XF-A9T8-01 6 7584626 7584626 C A DSP Silent p.I2377I 0.10 TCGA-XF-A9T8-01 6 7584710 7584710 C T DSP Silent p.L2405L 0.26 TCGA-XF-A9T8-01 6 7584878 7584878 C T DSP Silent p.L2461L 0.22 TCGA-XF-A9T8-01 6 7584896 7584896 C T DSP Silent p.V2467V 0.24 TCGA-XF-A9T8-01 6 7585036 7585036 C G DSP Missense_Mutation p.S2514C 0.25 probably_damaging(0.969) TCGA-XF-A9T8-01 6 7585151 7585151 C T DSP Silent p.L2552L 0.26 TCGA-XF-A9T8-01 6 7585226 7585226 C G DSP Silent p.V2577V 0.35 TCGA-XF-A9T8-01 7 100364724 100364724 G C ZAN Silent p.L1568L 0.42 TCGA-XF-A9T8-01 7 100392931 100392931 C G ZAN Missense_Mutation p.R2655G 0.24 unknown(0) TCGA-XF-A9T8-01 7 100608830 100608830 G A MUC3A Missense_Mutation p.D737N 0.20 tolerated(0.21) benign(0.253) TCGA-XF-A9T8-01 7 100676453 100676453 G C MUC17 Missense_Mutation p.E586Q 0.19 probably_damaging(0.985) TCGA-XF-A9T8-01 7 100771753 100771753 C T SERPINE1 Missense_Mutation p.P27S 0.21 tolerated(0.87) benign(0) TCGA-XF-A9T8-01 7 106523498 106523498 G C PIK3CG Missense_Mutation p.D884H 0.21 tolerated(0.08) benign(0.285) TCGA-XF-A9T8-01 7 112115600 112115600 C G IFRD1 3'UTR 0.33 TCGA-XF-A9T8-01 7 114210919 114210919 C T FOXP2 Missense_Mutation p.P106S 0.18 tolerated_low_confidence(0.26) benign(0.188) TCGA-XF-A9T8-01 7 121676718 121676718 C T PTPRZ1 Silent p.I1783I 0.27 TCGA-XF-A9T8-01 7 121773665 121773665 C T AASS Missense_Mutation p.R39K 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 7 129929454 129929454 C G CPA2 Nonsense_Mutation p.S376* 0.15 TCGA-XF-A9T8-01 7 138764853 138764853 C A ZC3HAV1 Missense_Mutation p.Q278H 0.32 tolerated(0.11) benign(0) TCGA-XF-A9T8-01 7 141414074 141414074 G A WEE2 Silent p.L136L 0.21 TCGA-XF-A9T8-01 7 142881470 142881470 G A TAS2R39 Missense_Mutation p.R320K 0.27 deleterious(0.04) benign(0.401) TCGA-XF-A9T8-01 7 148457438 148457438 G C CUL1 Silent p.L213L 0.10 TCGA-XF-A9T8-01 7 148921623 148921623 G A ZNF282 Missense_Mutation p.E634K 0.32 tolerated(0.08) possibly_damaging(0.821) TCGA-XF-A9T8-01 7 151845784 151845784 C T KMT2C Missense_Mutation p.D4410N 0.12 probably_damaging(0.999) TCGA-XF-A9T8-01 7 151880090 151880090 G C KMT2C Nonsense_Mutation p.S1745* 0.22 TCGA-XF-A9T8-01 7 155596208 155596208 C G SHH Missense_Mutation p.E259Q 0.38 tolerated(0.17) benign(0.026) TCGA-XF-A9T8-01 7 158554234 158554234 G A ESYT2 Missense_Mutation p.L444F 0.15 tolerated(0.08) benign(0.067) TCGA-XF-A9T8-01 7 23808778 23808778 C T STK31 Silent p.F527F 0.19 TCGA-XF-A9T8-01 7 23810741 23810741 G C STK31 Missense_Mutation p.E611Q 0.19 deleterious(0.04) benign(0.303) TCGA-XF-A9T8-01 7 27868398 27868398 G C TAX1BP1 Missense_Mutation p.E774Q 0.17 deleterious(0.04) possibly_damaging(0.53) TCGA-XF-A9T8-01 7 28725767 28725767 C T CREB5 Intron 0.22 TCGA-XF-A9T8-01 7 30185805 30185805 G T MTURN Nonsense_Mutation p.E59* 0.28 TCGA-XF-A9T8-01 7 36662829 36662829 T C AOAH Silent p.K183K 0.14 TCGA-XF-A9T8-01 7 4116724 4116724 C T SDK1 Silent p.L1035L 0.20 TCGA-XF-A9T8-01 7 43659295 43659295 G A STK17A Missense_Mutation p.E222K 0.20 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 7 45145091 45145091 C T TBRG4 Missense_Mutation p.M228I 0.19 tolerated(0.15) benign(0.08) TCGA-XF-A9T8-01 7 45930194 45930194 G A IGFBP1 Missense_Mutation p.E133K 0.12 deleterious(0.02) benign(0.012) TCGA-XF-A9T8-01 7 56007770 56007770 C T ZNF713 3'UTR 0.29 TCGA-XF-A9T8-01 7 65557059 65557059 C G ASL Missense_Mutation p.L377V 0.13 deleterious(0) possibly_damaging(0.858) TCGA-XF-A9T8-01 7 69064835 69064835 G A AUTS2 Missense_Mutation p.A66T 0.17 tolerated_low_confidence(0.23) benign(0.206) TCGA-XF-A9T8-01 7 73008651 73008651 G C MLXIPL Nonsense_Mutation p.S798* 0.23 TCGA-XF-A9T8-01 7 76019351 76019351 G A SRCRB4D 3'UTR 0.30 TCGA-XF-A9T8-01 7 81588617 81588617 C G CACNA2D1 Missense_Mutation p.D1045H 0.10 tolerated(0.45) possibly_damaging(0.853) TCGA-XF-A9T8-01 7 91630939 91630939 G C AKAP9 Missense_Mutation p.D570H 0.22 probably_damaging(0.982) TCGA-XF-A9T8-01 7 91631431 91631431 G A AKAP9 Missense_Mutation p.E734K 0.32 probably_damaging(0.999) TCGA-XF-A9T8-01 7 91690718 91690718 G C AKAP9 Missense_Mutation p.E1916Q 0.11 possibly_damaging(0.904) TCGA-XF-A9T8-01 7 91726008 91726008 G A AKAP9 Silent p.L3245L 0.13 TCGA-XF-A9T8-01 7 92019317 92019317 G A ANKIB1 Missense_Mutation p.E647K 0.06 tolerated(0.17) possibly_damaging(0.885) TCGA-XF-A9T8-01 7 94057038 94057038 C T COL1A2 Missense_Mutation p.R1123C 0.17 unknown(0) TCGA-XF-A9T8-01 7 94059612 94059612 A G COL1A2 Silent p.P1336P 0.24 TCGA-XF-A9T8-01 7 99669301 99669301 G C ZNF3 Missense_Mutation p.S269C 0.18 deleterious(0.01) probably_damaging(0.962) TCGA-XF-A9T8-01 8 100454857 100454857 G C VPS13B Missense_Mutation p.E1147Q 0.15 tolerated(0.09) probably_damaging(0.942) TCGA-XF-A9T8-01 8 100791181 100791181 G A VPS13B Silent p.V2592V 0.13 TCGA-XF-A9T8-01 8 101716565 101716565 C G PABPC1 Missense_Mutation p.Q624H 0.26 tolerated(0.12) benign(0.002) TCGA-XF-A9T8-01 8 102504985 102504985 C G GRHL2 5'UTR 0.37 TCGA-XF-A9T8-01 8 103284793 103284793 C G UBR5 Missense_Mutation p.E2313Q 0.16 deleterious(0.02) benign(0.012) TCGA-XF-A9T8-01 8 113649141 113649141 G C CSMD3 Nonsense_Mutation p.S1207* 0.20 TCGA-XF-A9T8-01 8 121326259 121326259 G T COL14A1 Missense_Mutation p.G1515V 0.19 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 8 125332377 125332377 G C TMEM65 Missense_Mutation p.L191V 0.24 deleterious(0) probably_damaging(0.942) TCGA-XF-A9T8-01 8 145111642 145111642 C T OPLAH Missense_Mutation p.E575K 0.23 deleterious(0.03) benign(0.103) TCGA-XF-A9T8-01 8 145625784 145625784 C G CPSF1 Missense_Mutation p.D264H 0.35 deleterious(0) probably_damaging(0.998) TCGA-XF-A9T8-01 8 22972214 22972214 G A TNFRSF10C Missense_Mutation p.E71K 0.29 tolerated(0.19) benign(0.288) TCGA-XF-A9T8-01 8 28218496 28218496 G C ZNF395 Missense_Mutation p.S49C 0.35 tolerated(0.18) benign(0.01) TCGA-XF-A9T8-01 8 30704321 30704321 C A TEX15 Missense_Mutation p.G738V 0.15 tolerated(0.06) benign(0.346) TCGA-XF-A9T8-01 8 37734862 37734862 G A RAB11FIP1 Silent p.I193I 0.22 TCGA-XF-A9T8-01 8 42407818 42407818 C T SMIM19 3'UTR 0.27 TCGA-XF-A9T8-01 8 53062380 53062380 G A ST18 Missense_Mutation p.A655V 0.12 tolerated(0.05) probably_damaging(0.96) TCGA-XF-A9T8-01 8 54934720 54934720 G A TCEA1 5'UTR 0.26 TCGA-XF-A9T8-01 8 68112622 68112622 C T ARFGEF1 Intron 0.19 TCGA-XF-A9T8-01 8 68995622 68995622 G C PREX2 Missense_Mutation p.E676Q 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-XF-A9T8-01 8 77764240 77764240 C G ZFHX4 Missense_Mutation p.Q1695E 0.17 benign(0.092) TCGA-XF-A9T8-01 8 86041430 86041430 G A LRRCC1 Missense_Mutation p.R481K 0.17 tolerated(1) benign(0.001) TCGA-XF-A9T8-01 8 86392977 86392977 C G CA2 Missense_Mutation p.Q248E 0.34 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 8 8887607 8887607 C G ERI1 3'UTR 0.13 TCGA-XF-A9T8-01 8 94747019 94747019 G A RBM12B Silent p.F540F 0.12 TCGA-XF-A9T8-01 8 94747051 94747051 G A RBM12B Nonsense_Mutation p.Q530* 0.13 TCGA-XF-A9T8-01 8 94747101 94747101 G C RBM12B Nonsense_Mutation p.S513* 0.13 TCGA-XF-A9T8-01 8 94747137 94747137 G A RBM12B Missense_Mutation p.S501L 0.19 deleterious(0.02) benign(0.352) TCGA-XF-A9T8-01 8 94747366 94747369 GAAG AAA RBM12B Frame_Shift_Del p.L424Ffs*22 0.24 TCGA-XF-A9T8-01 8 94747515 94747515 G A RBM12B Missense_Mutation p.S375L 0.17 tolerated(0.23) benign(0) TCGA-XF-A9T8-01 8 94747639 94747639 G C RBM12B Missense_Mutation p.L334V 0.09 tolerated(0.5) possibly_damaging(0.864) TCGA-XF-A9T8-01 8 94748436 94748436 G A RBM12B Missense_Mutation p.S68F 0.16 tolerated(0.51) possibly_damaging(0.522) TCGA-XF-A9T8-01 8 95504025 95504025 G A KIAA1429 Nonsense_Mutation p.Q1641* 0.14 TCGA-XF-A9T8-01 9 100105692 100105692 G C CCDC180 Missense_Mutation p.G826A 0.27 deleterious(0) benign(0.002) TCGA-XF-A9T8-01 9 104048463 104048463 G A LPPR1 Silent p.L110L 0.16 TCGA-XF-A9T8-01 9 104432516 104432516 G C GRIN3A Silent p.L726L 0.29 TCGA-XF-A9T8-01 9 115931946 115931946 C G FKBP15 Missense_Mutation p.E1015Q 0.17 tolerated_low_confidence(0.05) benign(0.099) TCGA-XF-A9T8-01 9 116060489 116060489 C T RNF183 5'UTR 0.27 TCGA-XF-A9T8-01 9 119414050 119414050 C G ASTN2 Missense_Mutation p.K892N 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-XF-A9T8-01 9 124914585 124914585 C G NDUFA8 Missense_Mutation p.D52H 0.34 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T8-01 9 125377337 125377337 C T OR1Q1 Silent p.F107F 0.24 TCGA-XF-A9T8-01 9 129815197 129815197 C T RALGPS1 Silent p.F154F 0.23 TCGA-XF-A9T8-01 9 130911731 130911731 C T LCN2 Intron 0.14 TCGA-XF-A9T8-01 9 131198051 131198051 C A CERCAM Missense_Mutation p.S552Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 9 131356617 131356617 G A SPTAN1 Missense_Mutation p.E1127K 0.38 tolerated(0.13) probably_damaging(0.988) TCGA-XF-A9T8-01 9 13138005 13138005 C G MPDZ Missense_Mutation p.G1384A 0.16 deleterious(0.02) probably_damaging(1) TCGA-XF-A9T8-01 9 13138106 13138106 C T MPDZ Missense_Mutation p.M1350I 0.15 tolerated(0.16) benign(0.015) TCGA-XF-A9T8-01 9 131709109 131709109 C T DOLK Silent p.S158S 0.29 TCGA-XF-A9T8-01 9 131767807 131767807 C G NUP188 Missense_Mutation p.Q1579E 0.09 deleterious(0.01) possibly_damaging(0.84) TCGA-XF-A9T8-01 9 131768007 131768007 C T NUP188 Silent p.F1607F 0.22 TCGA-XF-A9T8-01 9 131783434 131783434 G A SH3GLB2 Silent p.N90N 0.27 TCGA-XF-A9T8-01 9 131864267 131864267 C G CRAT Missense_Mutation p.E234Q 0.28 tolerated(0.23) benign(0.299) TCGA-XF-A9T8-01 9 132484580 132484580 C G PRRX2 Silent p.L237L 0.31 TCGA-XF-A9T8-01 9 133750279 133750279 G A ABL1 Silent p.L389L 0.22 TCGA-XF-A9T8-01 9 134106065 134106065 G C NUP214 Missense_Mutation p.Q2041H 0.14 possibly_damaging(0.891) TCGA-XF-A9T8-01 9 136596520 136596520 G C SARDH Silent p.L199L 0.20 TCGA-XF-A9T8-01 9 139369010 139369010 G A SEC16A Nonsense_Mutation p.Q1020* 0.21 TCGA-XF-A9T8-01 9 140087082 140087082 G C TPRN Missense_Mutation p.S596C 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 9 140128102 140128102 C T SLC34A3 Silent p.I258I 0.07 TCGA-XF-A9T8-01 9 140438009 140438009 C G PNPLA7 Missense_Mutation p.K127N 0.23 tolerated(0.06) possibly_damaging(0.877) TCGA-XF-A9T8-01 9 140509455 140509455 G A ARRDC1 Intron 0.37 TCGA-XF-A9T8-01 9 19058406 19058406 G C HAUS6 Missense_Mutation p.L787V 0.23 tolerated(0.18) benign(0.163) TCGA-XF-A9T8-01 9 21141383 21141383 G A IFNW1 Nonsense_Mutation p.Q63* 0.13 TCGA-XF-A9T8-01 9 21141551 21141551 G A IFNW1 Silent p.L7L 0.12 TCGA-XF-A9T8-01 9 32488167 32488167 C G DDX58 Missense_Mutation p.E330Q 0.13 tolerated(0.26) benign(0.067) TCGA-XF-A9T8-01 9 33973226 33973226 C T UBAP2 Missense_Mutation p.R177H 0.17 tolerated(0.11) probably_damaging(0.98) TCGA-XF-A9T8-01 9 34257704 34257704 C G KIF24 Missense_Mutation p.R634T 0.24 deleterious(0.01) benign(0.412) TCGA-XF-A9T8-01 9 34616067 34616067 C T DCTN3 Silent p.V104V 0.25 TCGA-XF-A9T8-01 9 35092728 35092728 G C PIGO Missense_Mutation p.Q386E 0.29 tolerated(0.22) benign(0.416) TCGA-XF-A9T8-01 9 35606242 35606242 G C TESK1 Missense_Mutation p.G117A 0.14 deleterious(0) probably_damaging(1) TCGA-XF-A9T8-01 9 36170156 36170156 C G CCIN Missense_Mutation p.F219L 0.19 tolerated(0.82) benign(0.018) TCGA-XF-A9T8-01 9 36966699 36966699 C G PAX5 Silent p.P209P 0.17 TCGA-XF-A9T8-01 9 37733772 37733772 C T FRMPD1 Missense_Mutation p.L390F 0.14 deleterious(0) probably_damaging(0.915) TCGA-XF-A9T8-01 9 3932366 3932366 C A GLIS3 Missense_Mutation p.R659S 0.16 deleterious(0) probably_damaging(0.928) TCGA-XF-A9T8-01 9 4844670 4844670 G A RCL1 Missense_Mutation p.E286K 0.17 deleterious(0) probably_damaging(0.951) TCGA-XF-A9T8-01 9 7011802 7011802 G C KDM4C Missense_Mutation p.E631Q 0.19 deleterious(0) possibly_damaging(0.886) TCGA-XF-A9T8-01 9 77365633 77365633 G C TRPM6 Silent p.L1668L 0.09 TCGA-XF-A9T8-01 9 77386741 77386741 G T TRPM6 Silent p.L1138L 0.16 TCGA-XF-A9T8-01 9 95477685 95477685 G A BICD2 Silent p.D773D 0.17 TCGA-XF-A9T8-01 9 97847726 97847726 G T C9orf3 Intron 0.21 TCGA-XF-A9T8-01 X 109964677 109964677 A G CHRDL1 Missense_Mutation p.L128P 0.57 deleterious(0) possibly_damaging(0.721) TCGA-XF-A9T8-01 X 118726496 118726496 C G NKRF Intron 0.80 TCGA-XF-A9T8-01 X 118985779 118985779 G C UPF3B Missense_Mutation p.Q72E 0.50 deleterious(0.01) probably_damaging(0.963) TCGA-XF-A9T8-01 X 123525955 123525955 T G TENM1 Missense_Mutation p.I1879L 0.05 tolerated(0.28) benign(0.01) TCGA-XF-A9T8-01 X 148068996 148068996 C T AFF2 Silent p.H1241H 0.18 TCGA-XF-A9T8-01 X 15800717 15800717 C G CA5B Missense_Mutation p.S295C 0.43 deleterious(0) probably_damaging(0.999) TCGA-XF-A9T8-01 X 16773177 16773177 G C SYAP1 Missense_Mutation p.E229Q 0.42 tolerated(0.12) possibly_damaging(0.501) TCGA-XF-A9T8-01 X 17121838 17121838 C T REPS2 Intron 0.37 TCGA-XF-A9T8-01 X 18230687 18230687 C G BEND2 Missense_Mutation p.E164Q 0.57 tolerated(0.26) benign(0.01) TCGA-XF-A9T8-01 X 40456901 40456901 G A ATP6AP2 Silent p.L173L 0.13 TCGA-XF-A9T8-01 X 41204702 41204702 G T DDX3X Nonsense_Mutation p.G406* 0.09 TCGA-XF-A9T8-01 X 44089008 44089008 G A EFHC2 Silent p.L546L 0.18 TCGA-XF-A9T8-01 X 44703471 44703471 C T DUSP21 Silent p.L31L 0.52 TCGA-XF-A9T8-01 X 48054495 48054495 C G SSX5 Missense_Mutation p.R47T 0.39 deleterious_low_confidence(0) benign(0.121) TCGA-XF-A9T8-01 X 69253326 69253326 G C EDA Missense_Mutation p.G291A 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-A9T8-01 X 80532491 80532491 G A SH3BGRL Silent p.K18K 0.28 TCGA-XF-A9T8-01 X 83361431 83361431 G A RPS6KA6 Missense_Mutation p.S436F 0.47 deleterious(0) probably_damaging(0.995) TCGA-XF-A9T8-01 Y 14847563 14847563 C T USP9Y Silent p.L225L 0.30 TCGA-XF-A9T8-01 Y 16734319 16734319 C T NLGN4Y Missense_Mutation p.S107F 0.45 deleterious(0.01) benign(0.06) TCGA-XF-AAME-01 10 78944630 78944630 T C KCNMA1 Missense_Mutation p.Q216R 0.11 tolerated(0.12) possibly_damaging(0.782) TCGA-XF-AAME-01 10 96269873 96269873 C T TBC1D12 Silent p.A542A 0.05 TCGA-XF-AAME-01 11 108117756 108117756 A G ATM Missense_Mutation p.I323V 0.10 deleterious(0.05) benign(0.14) TCGA-XF-AAME-01 11 63990660 63990660 A C FERMT3 Missense_Mutation p.Q608P 0.11 deleterious(0.02) probably_damaging(0.947) TCGA-XF-AAME-01 11 66272227 66272227 C G DPP3 Missense_Mutation p.P675A 0.07 tolerated(1) benign(0.01) TCGA-XF-AAME-01 12 56998514 56998514 G T BAZ2A Missense_Mutation p.R942S 0.12 deleterious(0) probably_damaging(0.985) TCGA-XF-AAME-01 13 21013753 21013753 C A CRYL1 Missense_Mutation p.K139N 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.876) TCGA-XF-AAME-01 13 47466612 47466612 C T HTR2A Missense_Mutation p.A176T 0.08 deleterious(0) probably_damaging(0.987) TCGA-XF-AAME-01 13 49030367 49030368 - A RB1 Frame_Shift_Ins p.G617Rfs*36 0.12 TCGA-XF-AAME-01 15 37242597 37242597 G T MEIS2 Missense_Mutation p.P302Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-XF-AAME-01 15 90451511 90451511 C T C15orf38-AP3S2 Splice_Site p.X101_splice 0.18 TCGA-XF-AAME-01 17 28656432 28656432 G A TMIGD1 Silent p.L66L 0.06 TCGA-XF-AAME-01 17 37667787 37667787 C T CDK12 Missense_Mutation p.P891L 0.08 probably_damaging(1) TCGA-XF-AAME-01 17 7689945 7689945 C A DNAH2 Missense_Mutation p.L2136I 0.06 probably_damaging(0.999) TCGA-XF-AAME-01 19 48522984 48522984 G A ELSPBP1 Missense_Mutation p.G122R 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-AAME-01 1 47119538 47119538 A T ATPAF1 Missense_Mutation p.I187N 0.06 deleterious(0) probably_damaging(0.993) TCGA-XF-AAME-01 2 37036046 37036046 C A VIT Missense_Mutation p.N607K 0.08 deleterious(0.01) possibly_damaging(0.856) TCGA-XF-AAME-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.09 tolerated(0.11) possibly_damaging(0.529) TCGA-XF-AAME-01 4 187542804 187542804 G A FAT1 Missense_Mutation p.P1646S 0.06 possibly_damaging(0.449) TCGA-XF-AAME-01 5 140725811 140725811 C T PCDHGA3 Silent p.G737G 0.06 TCGA-XF-AAME-01 5 158630573 158630573 G A RNF145 Missense_Mutation p.P48L 0.09 deleterious(0) probably_damaging(1) TCGA-XF-AAME-01 6 114274541 114274541 T C HDAC2 Missense_Mutation p.H180R 0.08 deleterious(0) probably_damaging(0.988) TCGA-XF-AAME-01 8 77767349 77767349 A T ZFHX4 Missense_Mutation p.D2731V 0.10 probably_damaging(0.961) TCGA-XF-AAME-01 9 7103709 7103709 G A KDM4C Missense_Mutation p.V817I 0.07 tolerated(0.28) benign(0.014) TCGA-XF-AAME-01 X 96171555 96171555 T G DIAPH2 Missense_Mutation p.I284S 0.09 deleterious(0.01) unknown(0) TCGA-XF-AAMF-01 10 118236204 118236204 G A PNLIPRP3 Missense_Mutation p.D405N 0.45 deleterious(0.03) possibly_damaging(0.48) TCGA-XF-AAMF-01 10 125521536 125521536 G A CPXM2 Silent p.P543P 0.55 TCGA-XF-AAMF-01 10 8115963 8115964 - GC GATA3 Frame_Shift_Ins p.M439Afs*38 0.39 TCGA-XF-AAMF-01 10 89720853 89720853 G C PTEN Missense_Mutation p.R335P 0.05 deleterious(0) possibly_damaging(0.726) TCGA-XF-AAMF-01 10 95360703 95360703 C T RBP4 Missense_Mutation p.R28Q 0.47 tolerated(0.72) benign(0) TCGA-XF-AAMF-01 10 98819903 98819903 C T SLIT1 Silent p.L318L 0.56 TCGA-XF-AAMF-01 11 111781084 111781084 C G CRYAB Silent p.V97V 0.31 TCGA-XF-AAMF-01 11 111941115 111941115 G T PIH1D2 Intron 0.14 TCGA-XF-AAMF-01 11 111941231 111941231 G A PIH1D2 Silent p.L248L 0.38 TCGA-XF-AAMF-01 11 130332580 130332580 C T ADAMTS15 Missense_Mutation p.R483C 0.42 deleterious(0) probably_damaging(1) TCGA-XF-AAMF-01 11 47315431 47315431 C T MADD Intron 0.30 TCGA-XF-AAMF-01 11 6472571 6472571 T C TRIM3 Missense_Mutation p.N544S 0.32 tolerated(0.29) probably_damaging(0.999) TCGA-XF-AAMF-01 11 68171015 68171015 G A LRP5 Missense_Mutation p.G550E 0.45 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMF-01 12 56495505 56495505 G T ERBB3 Missense_Mutation p.S1232I 0.70 deleterious(0.04) possibly_damaging(0.497) TCGA-XF-AAMF-01 13 114138204 114138204 C T DCUN1D2 Silent p.R57R 0.49 TCGA-XF-AAMF-01 13 38156628 38156628 G A POSTN Missense_Mutation p.R423C 0.56 deleterious(0.01) probably_damaging(0.988) TCGA-XF-AAMF-01 13 48955559 48955559 G T RB1 Nonsense_Mutation p.E559* 0.70 TCGA-XF-AAMF-01 14 20389576 20389576 C T OR4K5 Missense_Mutation p.L271F 0.16 deleterious(0.03) possibly_damaging(0.766) TCGA-XF-AAMF-01 14 31642454 31642454 A G HECTD1 Missense_Mutation p.L355S 0.32 tolerated(0.88) benign(0.062) TCGA-XF-AAMF-01 14 38061812 38061812 C T FOXA1 Missense_Mutation p.M59I 0.51 deleterious(0) benign(0.115) TCGA-XF-AAMF-01 14 64522743 64522743 G A SYNE2 Missense_Mutation p.E3276K 0.35 possibly_damaging(0.892) TCGA-XF-AAMF-01 14 93762412 93762412 C G BTBD7 5'UTR 0.50 TCGA-XF-AAMF-01 15 78894423 78894423 G C CHRNA3 Missense_Mutation p.I187M 0.37 deleterious(0) probably_damaging(0.954) TCGA-XF-AAMF-01 16 27500923 27500923 G A GTF3C1 Missense_Mutation p.T1098I 0.40 deleterious(0.02) benign(0.246) TCGA-XF-AAMF-01 16 31075655 31075676 GGCAGCGTGGCGCGCTGCCCTG - ZNF668 Frame_Shift_Del p.R59Hfs*14 0.13 TCGA-XF-AAMF-01 16 3639472 3639472 C T SLX4 Silent p.A1389A 0.31 TCGA-XF-AAMF-01 16 49670007 49670007 C A ZNF423 Missense_Mutation p.G1019V 0.68 deleterious(0.01) probably_damaging(0.943) TCGA-XF-AAMF-01 16 72830711 72830711 A C ZFHX3 Missense_Mutation p.V1957G 0.46 probably_damaging(0.966) TCGA-XF-AAMF-01 17 19186443 19186443 C T EPN2 Missense_Mutation p.S4L 0.62 deleterious(0) probably_damaging(0.981) TCGA-XF-AAMF-01 17 19646634 19646634 G A ALDH3A1 Missense_Mutation p.S102L 0.60 tolerated(0.3) possibly_damaging(0.653) TCGA-XF-AAMF-01 17 33690695 33690695 C G SLFN11 Missense_Mutation p.E44D 0.32 tolerated(0.42) benign(0.013) TCGA-XF-AAMF-01 17 37008912 37008912 C A RPL23 Silent p.V57V 0.42 TCGA-XF-AAMF-01 17 38978803 38978803 G A KRT10 Missense_Mutation p.S12F 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-XF-AAMF-01 17 56390076 56390076 G C BZRAP1 Silent p.L702L 0.48 TCGA-XF-AAMF-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.65 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMF-01 17 8273444 8273444 C T KRBA2 Missense_Mutation p.D163N 0.53 deleterious(0.01) probably_damaging(0.969) TCGA-XF-AAMF-01 17 8273534 8273534 C G KRBA2 Missense_Mutation p.E133Q 0.54 tolerated(0.09) probably_damaging(0.959) TCGA-XF-AAMF-01 18 2885067 2885067 T C EMILIN2 Silent p.G121G 0.40 TCGA-XF-AAMF-01 18 346526 346526 C T COLEC12 Missense_Mutation p.E366K 0.37 deleterious(0.04) benign(0.264) TCGA-XF-AAMF-01 18 39661119 39661119 C G PIK3C3 3'UTR 0.21 TCGA-XF-AAMF-01 19 17838339 17838339 G A MAP1S Missense_Mutation p.G716R 0.55 deleterious(0.03) probably_damaging(1) TCGA-XF-AAMF-01 19 18898399 18898399 C T COMP Missense_Mutation p.D346N 0.29 deleterious(0.02) possibly_damaging(0.681) TCGA-XF-AAMF-01 19 36108212 36108212 C T HAUS5 Silent p.T193T 0.22 TCGA-XF-AAMF-01 19 38943512 38943512 C T RYR1 Missense_Mutation p.T433M 0.56 benign(0.075) TCGA-XF-AAMF-01 19 42569520 42569520 C G GRIK5 Missense_Mutation p.Q33H 0.31 tolerated(0.12) benign(0.102) TCGA-XF-AAMF-01 19 47910374 47910374 C A MEIS3 Missense_Mutation p.R365L 0.38 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMF-01 19 54314142 54314142 C G NLRP12 Missense_Mutation p.Q257H 0.24 tolerated(0.16) probably_damaging(0.954) TCGA-XF-AAMF-01 19 6333532 6333532 C T ACER1 Missense_Mutation p.E11K 0.44 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMF-01 19 8140075 8140075 C G FBN3 Splice_Site p.X2528_splice 0.40 TCGA-XF-AAMF-01 19 9720798 9720798 C T ZNF561 3'UTR 0.46 TCGA-XF-AAMF-01 1 117307114 117307114 C A CD2 Missense_Mutation p.L208M 0.22 deleterious(0.03) probably_damaging(0.97) TCGA-XF-AAMF-01 1 154936333 154936333 G A SHC1 Silent p.I567I 0.36 TCGA-XF-AAMF-01 1 155753807 155753807 C T GON4L Missense_Mutation p.R621H 0.37 deleterious(0) possibly_damaging(0.869) TCGA-XF-AAMF-01 1 161514498 161514498 G C FCGR3A Missense_Mutation p.I226M 0.47 deleterious(0) possibly_damaging(0.804) TCGA-XF-AAMF-01 1 161753803 161753803 C T ATF6 Nonsense_Mutation p.Q91* 0.24 TCGA-XF-AAMF-01 1 166991023 166991023 C G MAEL Missense_Mutation p.N412K 0.48 deleterious_low_confidence(0.04) benign(0.046) TCGA-XF-AAMF-01 1 181024492 181024492 G A MR1 3'UTR 0.23 TCGA-XF-AAMF-01 1 28887162 28887162 G A TRNAU1AP Missense_Mutation p.C48Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMF-01 1 53099244 53099244 G A FAM159A Missense_Mutation p.E27K 0.38 tolerated(0.13) probably_damaging(0.991) TCGA-XF-AAMF-01 1 59142669 59142669 C T MYSM1 Missense_Mutation p.C440Y 0.31 deleterious(0) possibly_damaging(0.892) TCGA-XF-AAMF-01 1 66834549 66834549 G A PDE4B Missense_Mutation p.R581H 0.40 deleterious(0) probably_damaging(0.989) TCGA-XF-AAMF-01 1 85488019 85488019 C G MCOLN3 Missense_Mutation p.G387A 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-XF-AAMF-01 20 39794164 39794164 C T PLCG1 Silent p.G528G 0.12 TCGA-XF-AAMF-01 20 50406642 50406642 G C SALL4 Missense_Mutation p.Q794E 0.55 tolerated(0.06) benign(0.101) TCGA-XF-AAMF-01 22 50277565 50277565 G A ZBED4 Silent p.A85A 0.56 TCGA-XF-AAMF-01 2 223917899 223917899 C G KCNE4 Silent p.L117L 0.63 TCGA-XF-AAMF-01 3 124951214 124951214 C T ZNF148 Missense_Mutation p.D786N 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-XF-AAMF-01 4 119631241 119631241 G C METTL14 Missense_Mutation p.L385F 0.55 deleterious(0.03) probably_damaging(0.991) TCGA-XF-AAMF-01 4 37592524 37592524 G T C4orf19 Missense_Mutation p.G283W 0.35 deleterious(0.04) unknown(0) TCGA-XF-AAMF-01 4 44450144 44450144 C G KCTD8 Missense_Mutation p.E133Q 0.48 deleterious(0) probably_damaging(1) TCGA-XF-AAMF-01 4 68539451 68539451 G A UBA6 Silent p.I170I 0.38 TCGA-XF-AAMF-01 4 87968689 87968689 G C AFF1 Missense_Mutation p.L334F 0.29 deleterious(0.05) possibly_damaging(0.833) TCGA-XF-AAMF-01 5 112176008 112176008 G C APC Missense_Mutation p.E1573Q 0.35 possibly_damaging(0.882) TCGA-XF-AAMF-01 5 55204151 55204151 C T IL31RA Silent p.I471I 0.34 TCGA-XF-AAMF-01 5 677986 677986 C T TPPP Missense_Mutation p.A64T 0.56 tolerated(1) benign(0.001) TCGA-XF-AAMF-01 5 68602652 68602652 T C CCDC125 Silent p.K203K 0.41 TCGA-XF-AAMF-01 5 79732757 79732757 C - ZFYVE16 Frame_Shift_Del p.L85Sfs*13 0.30 TCGA-XF-AAMF-01 5 82833948 82833948 C A VCAN Missense_Mutation p.T1709K 0.29 deleterious(0.04) possibly_damaging(0.489) TCGA-XF-AAMF-01 6 132021713 132021713 G A OR2A4 Missense_Mutation p.H277Y 0.25 tolerated(1) benign(0.011) TCGA-XF-AAMF-01 6 24403211 24403211 G C MRS2 5'UTR 0.48 TCGA-XF-AAMF-01 6 28540951 28540951 T C SCAND3 Silent p.E905E 0.32 TCGA-XF-AAMF-01 6 33283569 33283569 G C ZBTB22 Silent p.V375V 0.29 TCGA-XF-AAMF-01 6 4125518 4125518 A G ECI2 Missense_Mutation p.L254P 0.32 deleterious(0) probably_damaging(1) TCGA-XF-AAMF-01 6 74228234 74228234 G C EEF1A1 Missense_Mutation p.S291C 0.24 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-XF-AAMF-01 7 155599048 155599048 G - SHH Frame_Shift_Del p.G169Afs*17 0.19 TCGA-XF-AAMF-01 7 20371490 20371490 C G ITGB8 Missense_Mutation p.R21G 0.60 tolerated_low_confidence(0.09) benign(0) TCGA-XF-AAMF-01 7 40172762 40172762 C G MPLKIP Missense_Mutation p.E146Q 0.41 tolerated(0.3) possibly_damaging(0.859) TCGA-XF-AAMF-01 7 40172806 40172806 C G MPLKIP Missense_Mutation p.R131T 0.33 deleterious(0.04) possibly_damaging(0.765) TCGA-XF-AAMF-01 7 82543969 82543969 G C PCLO Intron 0.45 TCGA-XF-AAMF-01 8 117868900 117868900 C T RAD21 Missense_Mutation p.D267N 0.34 tolerated(0.43) benign(0.124) TCGA-XF-AAMF-01 8 144652761 144652761 G A MROH6 Missense_Mutation p.P263S 0.42 tolerated(0.08) benign(0.254) TCGA-XF-AAMF-01 8 39495994 39495994 C T ADAM18 Missense_Mutation p.H280Y 0.46 tolerated(0.21) probably_damaging(0.937) TCGA-XF-AAMF-01 8 48648020 48648020 C T SPIDR 3'UTR 0.30 TCGA-XF-AAMF-01 8 62465592 62465592 C T ASPH Missense_Mutation p.E542K 0.32 deleterious(0) benign(0.146) TCGA-XF-AAMF-01 8 75944497 75944497 G A CRISPLD1 3'UTR 0.26 TCGA-XF-AAMF-01 8 77619878 77619878 C T ZFHX4 Silent p.I896I 0.29 TCGA-XF-AAMF-01 8 95869021 95869021 A C INTS8 Missense_Mutation p.K590T 0.32 deleterious(0.05) possibly_damaging(0.65) TCGA-XF-AAMF-01 9 100616632 100616632 C T FOXE1 Missense_Mutation p.R146C 0.43 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMF-01 9 123875841 123875841 G C CNTRL Missense_Mutation p.R395T 0.30 probably_damaging(0.999) TCGA-XF-AAMG-01 10 102568945 102568945 G C PAX2 Missense_Mutation p.E314Q 0.21 tolerated(0.09) possibly_damaging(0.45) TCGA-XF-AAMG-01 10 116067664 116067664 C G AFAP1L2 Missense_Mutation p.K324N 0.60 deleterious(0) probably_damaging(0.95) TCGA-XF-AAMG-01 10 121662487 121662487 C G SEC23IP Missense_Mutation p.F291L 0.15 tolerated(1) benign(0.001) TCGA-XF-AAMG-01 10 12178148 12178148 C A SEC61A2 Missense_Mutation p.F40L 0.18 tolerated(0.86) benign(0.01) TCGA-XF-AAMG-01 10 12215813 12215813 C T NUDT5 Splice_Site p.X97_splice 0.13 TCGA-XF-AAMG-01 10 124671169 124671169 C G FAM24A Missense_Mutation p.L7V 0.53 deleterious(0.05) possibly_damaging(0.899) TCGA-XF-AAMG-01 10 126631460 126631460 C G ZRANB1 Missense_Mutation p.S133C 0.19 tolerated(0.08) benign(0.211) TCGA-XF-AAMG-01 10 129690851 129690851 G C CLRN3 Missense_Mutation p.H66Q 0.14 tolerated(0.48) benign(0.006) TCGA-XF-AAMG-01 10 129902387 129902387 C T MKI67 Missense_Mutation p.E2573K 0.52 tolerated(0.84) benign(0.016) TCGA-XF-AAMG-01 10 129903002 129903002 C G MKI67 Missense_Mutation p.D2368H 0.39 tolerated(0.05) probably_damaging(0.964) TCGA-XF-AAMG-01 10 129903019 129903019 C T MKI67 Missense_Mutation p.R2362K 0.35 tolerated(0.37) possibly_damaging(0.817) TCGA-XF-AAMG-01 10 129903606 129903606 C T MKI67 Silent p.Q2166Q 0.49 TCGA-XF-AAMG-01 10 129903924 129903924 C T MKI67 Silent p.E2060E 0.54 TCGA-XF-AAMG-01 10 129913933 129913933 C A MKI67 Nonsense_Mutation p.E247* 0.24 TCGA-XF-AAMG-01 10 135123789 135123789 G A ZNF511 Missense_Mutation p.R184K 0.10 tolerated(0.66) benign(0.009) TCGA-XF-AAMG-01 10 135237155 135237155 G C SPRN Missense_Mutation p.L11V 0.33 deleterious(0.01) possibly_damaging(0.567) TCGA-XF-AAMG-01 10 13789762 13789762 C T FRMD4A Silent p.L174L 0.16 TCGA-XF-AAMG-01 10 16635397 16635397 C G RSU1 Missense_Mutation p.R277T 0.69 deleterious_low_confidence(0.01) benign(0.004) TCGA-XF-AAMG-01 10 16960695 16960695 C T CUBN Missense_Mutation p.G2309E 0.17 tolerated(0.16) benign(0.33) TCGA-XF-AAMG-01 10 1779282 1779282 C T ADARB2 Silent p.K21K 0.12 TCGA-XF-AAMG-01 10 18242234 18242234 C T SLC39A12 Missense_Mutation p.S10F 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-XF-AAMG-01 10 21178818 21178818 G C NEBL Missense_Mutation p.P72A 0.15 deleterious(0.01) probably_damaging(0.915) TCGA-XF-AAMG-01 10 23257250 23257250 C T ARMC3 Missense_Mutation p.H250Y 0.34 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMG-01 10 29747416 29747416 C G SVIL Missense_Mutation p.E2169Q 0.48 deleterious(0.02) possibly_damaging(0.78) TCGA-XF-AAMG-01 10 29840135 29840135 G A SVIL Missense_Mutation p.S73F 0.28 deleterious(0.01) possibly_damaging(0.634) TCGA-XF-AAMG-01 10 34558700 34558700 C T PARD3 Missense_Mutation p.E1105K 0.34 tolerated(0.4) benign(0.119) TCGA-XF-AAMG-01 10 35468252 35468252 C G CREM Intron 0.49 TCGA-XF-AAMG-01 10 415485 415485 C T DIP2C Missense_Mutation p.E694K 0.16 deleterious(0.02) benign(0.173) TCGA-XF-AAMG-01 10 52067058 52067058 C T SGMS1 Missense_Mutation p.M362I 0.26 tolerated(0.26) benign(0.003) TCGA-XF-AAMG-01 10 5948587 5948587 G A FBXO18 Missense_Mutation p.D300N 0.22 tolerated(0.09) probably_damaging(0.919) TCGA-XF-AAMG-01 10 5952975 5952975 C G FBXO18 Silent p.L416L 0.11 TCGA-XF-AAMG-01 10 61011296 61011296 G C FAM13C Intron 0.27 TCGA-XF-AAMG-01 10 6150658 6150658 G A RBM17 Missense_Mutation p.G172E 0.41 deleterious(0.01) possibly_damaging(0.554) TCGA-XF-AAMG-01 10 61868649 61868649 C T ANK3 Missense_Mutation p.E1038K 0.55 probably_damaging(0.997) TCGA-XF-AAMG-01 10 64564918 64564918 C G ADO Silent p.R33R 0.33 TCGA-XF-AAMG-01 10 69647234 69647234 G A SIRT1 Missense_Mutation p.E164K 0.17 deleterious(0.01) benign(0.223) TCGA-XF-AAMG-01 10 70204807 70204807 G T DNA2 Nonsense_Mutation p.S450* 0.59 TCGA-XF-AAMG-01 10 70332352 70332352 G T TET1 Missense_Mutation p.R86M 0.21 deleterious(0) probably_damaging(0.979) TCGA-XF-AAMG-01 10 70332373 70332373 A G TET1 Missense_Mutation p.N93S 0.35 tolerated(0.1) possibly_damaging(0.814) TCGA-XF-AAMG-01 10 70333158 70333158 C G TET1 Missense_Mutation p.Q355E 0.48 tolerated(0.1) benign(0.004) TCGA-XF-AAMG-01 10 70333544 70333544 A T TET1 Silent p.S483S 0.33 TCGA-XF-AAMG-01 10 75556743 75556743 C A ZSWIM8 Missense_Mutation p.T1082N 0.21 tolerated(0.58) benign(0.002) TCGA-XF-AAMG-01 10 93220321 93220321 C T HECTD2 Nonsense_Mutation p.Q136* 0.19 TCGA-XF-AAMG-01 10 93588143 93588143 C G TNKS2 Missense_Mutation p.Q362E 0.57 tolerated(0.28) probably_damaging(0.95) TCGA-XF-AAMG-01 10 95275195 95275195 G A CEP55 Missense_Mutation p.D188N 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-XF-AAMG-01 10 95276895 95276895 G T CEP55 Nonsense_Mutation p.E295* 0.24 TCGA-XF-AAMG-01 10 95276946 95276946 G A CEP55 Missense_Mutation p.D312N 0.23 deleterious(0.05) benign(0.102) TCGA-XF-AAMG-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.72 TCGA-XF-AAMG-01 10 97959850 97959850 G C BLNK Missense_Mutation p.A359G 0.12 deleterious(0.03) possibly_damaging(0.793) TCGA-XF-AAMG-01 10 98742684 98742684 G A C10orf12 Missense_Mutation p.D513N 0.22 tolerated(0.05) probably_damaging(0.928) TCGA-XF-AAMG-01 10 99416117 99416117 C T PI4K2A Silent p.L208L 0.34 TCGA-XF-AAMG-01 11 103006287 103006287 C T DYNC2H1 Silent p.L757L 0.50 TCGA-XF-AAMG-01 11 105483104 105483104 T A GRIA4 Missense_Mutation p.L64M 0.44 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMG-01 11 105845073 105845073 G A GRIA4 Missense_Mutation p.G816S 0.11 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 11 10631321 10631321 C A MRVI1 Missense_Mutation p.D509Y 0.29 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 11 10631387 10631387 C G MRVI1 Missense_Mutation p.E487Q 0.25 tolerated(0.21) benign(0.419) TCGA-XF-AAMG-01 11 106810877 106810877 C G GUCY1A2 Missense_Mutation p.R172T 0.12 tolerated(0.3) benign(0.016) TCGA-XF-AAMG-01 11 107925384 107925384 T C CUL5 Silent p.C188C 0.22 TCGA-XF-AAMG-01 11 108155033 108155033 C T ATM Nonsense_Mutation p.Q1276* 0.33 TCGA-XF-AAMG-01 11 110454292 110454292 C G ARHGAP20 Missense_Mutation p.E529Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 11 110479732 110479732 C G ARHGAP20 Missense_Mutation p.E251Q 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-XF-AAMG-01 11 113934211 113934211 C T ZBTB16 Silent p.F63F 0.85 TCGA-XF-AAMG-01 11 117090345 117090345 G T PCSK7 Missense_Mutation p.R429S 0.12 deleterious(0.02) probably_damaging(1) TCGA-XF-AAMG-01 11 128839866 128839866 C T ARHGAP32 Missense_Mutation p.D1734N 0.79 deleterious(0.01) benign(0.388) TCGA-XF-AAMG-01 11 134180964 134180964 C T GLB1L3 Missense_Mutation p.P396L 0.83 deleterious(0.02) benign(0.133) TCGA-XF-AAMG-01 11 16838554 16838554 C G PLEKHA7 Silent p.R553R 0.27 TCGA-XF-AAMG-01 11 17143856 17143856 C G PIK3C2A Missense_Mutation p.D846H 0.18 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 11 18955474 18955474 G C MRGPRX1 Missense_Mutation p.N286K 0.38 deleterious(0) benign(0.045) TCGA-XF-AAMG-01 11 19251043 19251043 C G E2F8 Missense_Mutation p.K617N 0.26 deleterious(0.04) possibly_damaging(0.77) TCGA-XF-AAMG-01 11 26582555 26582555 G A MUC15 3'UTR 0.09 TCGA-XF-AAMG-01 11 26725383 26725383 C G SLC5A12 Missense_Mutation p.V213L 0.11 deleterious(0.02) possibly_damaging(0.447) TCGA-XF-AAMG-01 11 27078830 27078830 G C BBOX1 Missense_Mutation p.R101T 0.68 deleterious(0) possibly_damaging(0.868) TCGA-XF-AAMG-01 11 30944101 30944101 C G DCDC1 Missense_Mutation p.E1028Q 0.40 deleterious(0.02) benign(0) TCGA-XF-AAMG-01 11 32975402 32975402 G C QSER1 Splice_Site p.X1264_splice 0.12 TCGA-XF-AAMG-01 11 32997919 32997919 G C QSER1 Missense_Mutation p.E1703Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMG-01 11 36614600 36614600 C T RAG2 Silent p.G373G 0.11 TCGA-XF-AAMG-01 11 4409655 4409655 C T TRIM21 Missense_Mutation p.E204K 0.18 tolerated(0.08) possibly_damaging(0.556) TCGA-XF-AAMG-01 11 44956507 44956507 G C TP53I11 Silent p.V166V 0.21 TCGA-XF-AAMG-01 11 46691074 46691074 G C ATG13 Missense_Mutation p.E523Q 0.14 deleterious(0.04) benign(0.13) TCGA-XF-AAMG-01 11 47256871 47256871 G C DDB2 Missense_Mutation p.E311Q 0.19 tolerated(0.12) probably_damaging(0.998) TCGA-XF-AAMG-01 11 47701606 47701606 G C AGBL2 Missense_Mutation p.H645Q 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-XF-AAMG-01 11 4869834 4869834 C A OR51S1 Missense_Mutation p.G202V 0.16 deleterious(0) possibly_damaging(0.828) TCGA-XF-AAMG-01 11 51515473 51515473 C T OR4C46 Silent p.L64L 0.44 TCGA-XF-AAMG-01 11 5153156 5153156 C A OR52A5 Missense_Mutation p.K239N 0.22 deleterious(0) probably_damaging(0.981) TCGA-XF-AAMG-01 11 5443478 5443478 C A OR51Q1 Silent p.L16L 0.35 TCGA-XF-AAMG-01 11 55433159 55433159 G T OR4C6 Missense_Mutation p.D173Y 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-AAMG-01 11 55681910 55681910 C T OR5W2 Missense_Mutation p.R50K 0.24 tolerated(0.42) benign(0.007) TCGA-XF-AAMG-01 11 55797967 55797967 G A OR5AS1 Missense_Mutation p.V25I 0.20 tolerated(0.41) benign(0.004) TCGA-XF-AAMG-01 11 55873153 55873153 T C OR8H2 Missense_Mutation p.F212S 0.18 tolerated(0.15) benign(0) TCGA-XF-AAMG-01 11 56114216 56114216 G A OR8K1 Missense_Mutation p.M234I 0.10 tolerated_low_confidence(0.09) benign(0.146) TCGA-XF-AAMG-01 11 57947375 57947375 C T OR9Q1 Silent p.L153L 0.10 TCGA-XF-AAMG-01 11 59361172 59361172 G A OSBP Missense_Mutation p.A528V 0.13 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 11 59573818 59573818 C A MRPL16 3'UTR 0.14 TCGA-XF-AAMG-01 11 60482869 60482869 G T MS4A8 Missense_Mutation p.E245D 0.14 tolerated(0.31) benign(0.115) TCGA-XF-AAMG-01 11 60567518 60567518 C T MS4A10 3'UTR 0.41 TCGA-XF-AAMG-01 11 62414453 62414453 C G INTS5 3'UTR 0.33 TCGA-XF-AAMG-01 11 63059027 63059027 G A SLC22A10 Missense_Mutation p.D140N 0.12 tolerated(0.08) benign(0.071) TCGA-XF-AAMG-01 11 63487586 63487586 G C RTN3 Missense_Mutation p.E538Q 0.21 deleterious(0.01) possibly_damaging(0.575) TCGA-XF-AAMG-01 11 63884097 63884097 G A FLRT1 Missense_Mutation p.E120K 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-XF-AAMG-01 11 63991396 63991396 C G TRPT1 Missense_Mutation p.Q240H 0.32 deleterious_low_confidence(0.01) benign(0.234) TCGA-XF-AAMG-01 11 63991404 63991404 C T TRPT1 Missense_Mutation p.E238K 0.33 deleterious_low_confidence(0.04) benign(0.011) TCGA-XF-AAMG-01 11 63991410 63991410 C T TRPT1 Missense_Mutation p.E236K 0.27 deleterious_low_confidence(0.05) benign(0.005) TCGA-XF-AAMG-01 11 64123094 64123094 C G CCDC88B Missense_Mutation p.R1457G 0.14 tolerated(0.21) benign(0.007) TCGA-XF-AAMG-01 11 6541240 6541240 G A DNHD1 Missense_Mutation p.D565N 0.85 benign(0.003) TCGA-XF-AAMG-01 11 65819874 65819874 G A SF3B2 Missense_Mutation p.E7K 0.78 deleterious_low_confidence(0) benign(0.305) TCGA-XF-AAMG-01 11 67191857 67191857 G A CARNS1 Missense_Mutation p.E880K 0.43 deleterious(0.05) possibly_damaging(0.883) TCGA-XF-AAMG-01 11 67254641 67254641 C A AIP Missense_Mutation p.F88L 0.17 deleterious(0) possibly_damaging(0.876) TCGA-XF-AAMG-01 11 67926130 67926130 C G SUV420H1 Missense_Mutation p.L561F 0.25 tolerated(0.3) benign(0.005) TCGA-XF-AAMG-01 11 763933 763933 C T TALDO1 Missense_Mutation p.S275L 0.30 tolerated(0.06) possibly_damaging(0.662) TCGA-XF-AAMG-01 11 803428 803428 G A PIDD Missense_Mutation p.A152V 0.22 tolerated(0.41) benign(0.01) TCGA-XF-AAMG-01 11 8060484 8060484 T C TUB Missense_Mutation p.F22L 0.24 deleterious_low_confidence(0) benign(0.021) TCGA-XF-AAMG-01 11 84996333 84996333 T A DLG2 Missense_Mutation p.Q39H 0.06 tolerated_low_confidence(0.59) benign(0) TCGA-XF-AAMG-01 11 85375898 85375898 G C CREBZF Missense_Mutation p.L8V 0.25 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-XF-AAMG-01 11 85436386 85436386 G C SYTL2 Missense_Mutation p.L372V 0.08 tolerated(0.11) benign(0.306) TCGA-XF-AAMG-01 11 85622437 85622437 G C CCDC83 Missense_Mutation p.K262N 0.05 tolerated(0.06) benign(0.323) TCGA-XF-AAMG-01 11 8772257 8772257 C T ST5 5'UTR 0.82 TCGA-XF-AAMG-01 11 89424083 89424083 C A FOLH1B RNA 0.62 TCGA-XF-AAMG-01 12 100043106 100043106 G A FAM71C Missense_Mutation p.R219K 0.14 tolerated(0.09) benign(0.041) TCGA-XF-AAMG-01 12 100433482 100433482 C T UHRF1BP1L Silent p.L1389L 0.17 TCGA-XF-AAMG-01 12 1005406 1005406 C T WNK1 Missense_Mutation p.S1918F 0.17 deleterious(0) possibly_damaging(0.65) TCGA-XF-AAMG-01 12 1005554 1005554 C T WNK1 Silent p.I1967I 0.29 TCGA-XF-AAMG-01 12 100704857 100704857 G T SCYL2 Silent p.V172V 0.38 TCGA-XF-AAMG-01 12 102157983 102157983 G C GNPTAB Silent p.L904L 0.14 TCGA-XF-AAMG-01 12 10277986 10277986 G A CLEC7A Silent p.F134F 0.79 TCGA-XF-AAMG-01 12 104076986 104076986 G A STAB2 Missense_Mutation p.E937K 0.52 tolerated(0.37) benign(0.166) TCGA-XF-AAMG-01 12 104340409 104340409 C G HSP90B1 Missense_Mutation p.Q681E 0.15 tolerated(0.42) possibly_damaging(0.649) TCGA-XF-AAMG-01 12 104340576 104340576 G C HSP90B1 Missense_Mutation p.D707H 0.12 deleterious(0) probably_damaging(0.982) TCGA-XF-AAMG-01 12 104387228 104387228 C T GLT8D2 Silent p.L274L 0.49 TCGA-XF-AAMG-01 12 106460772 106460772 G A NUAK1 Silent p.I598I 0.23 TCGA-XF-AAMG-01 12 110353293 110353293 C G TCHP Nonsense_Mutation p.S469* 0.31 TCGA-XF-AAMG-01 12 110466240 110466240 C G ANKRD13A Intron 0.42 TCGA-XF-AAMG-01 12 112451288 112451288 C T ERP29 Missense_Mutation p.R7C 0.31 deleterious_low_confidence(0.01) benign(0.001) TCGA-XF-AAMG-01 12 112460024 112460024 C G ERP29 Missense_Mutation p.F118L 0.28 tolerated(0.5) benign(0.223) TCGA-XF-AAMG-01 12 113416527 113416527 G A OAS2 Silent p.V38V 0.42 TCGA-XF-AAMG-01 12 113416552 113416552 G T OAS2 Nonsense_Mutation p.E47* 0.50 TCGA-XF-AAMG-01 12 113538445 113538445 C G RASAL1 Missense_Mutation p.E757Q 0.09 tolerated(0.24) benign(0.016) TCGA-XF-AAMG-01 12 113756833 113756833 G C SLC8B1 Silent p.L246L 0.26 TCGA-XF-AAMG-01 12 113866262 113866262 C T SDSL Missense_Mutation p.S71L 0.19 deleterious(0) probably_damaging(0.968) TCGA-XF-AAMG-01 12 11420120 11420120 C G PRB3 3'UTR 0.33 TCGA-XF-AAMG-01 12 117273762 117273762 C T RNFT2 Intron 0.09 TCGA-XF-AAMG-01 12 120875952 120875952 C A COX6A1 Nonsense_Mutation p.S8* 0.50 TCGA-XF-AAMG-01 12 121768387 121768387 G A ANAPC5 Missense_Mutation p.P374L 0.12 deleterious(0) probably_damaging(0.992) TCGA-XF-AAMG-01 12 122359365 122359365 G T WDR66 Nonsense_Mutation p.E52* 0.13 TCGA-XF-AAMG-01 12 122669121 122669121 G A LRRC43 Missense_Mutation p.R69K 0.17 tolerated(0.87) benign(0.002) TCGA-XF-AAMG-01 12 122701308 122701308 C T DIABLO Missense_Mutation p.E142K 0.12 tolerated(0.11) possibly_damaging(0.653) TCGA-XF-AAMG-01 12 123789149 123789149 G C SBNO1 Missense_Mutation p.L1250V 0.38 deleterious(0.03) benign(0.019) TCGA-XF-AAMG-01 12 124354915 124354915 C G DNAH10 Missense_Mutation p.Q2390E 0.50 benign(0.004) TCGA-XF-AAMG-01 12 125434745 125434745 C G DHX37 Missense_Mutation p.E1056Q 0.21 tolerated(0.28) benign(0.266) TCGA-XF-AAMG-01 12 12814653 12814653 G A GPR19 Nonsense_Mutation p.Q244* 0.38 TCGA-XF-AAMG-01 12 129373271 129373271 G T GLT1D1 Missense_Mutation p.R102I 0.18 deleterious(0.02) benign(0.002) TCGA-XF-AAMG-01 12 131311793 131311793 C G STX2 Missense_Mutation p.G17A 0.30 tolerated(0.47) benign(0.011) TCGA-XF-AAMG-01 12 13220140 13220140 G A KIAA1467 Missense_Mutation p.R351Q 0.22 tolerated(0.23) benign(0.011) TCGA-XF-AAMG-01 12 13220172 13220172 G A KIAA1467 Missense_Mutation p.E362K 0.38 deleterious(0.01) benign(0.294) TCGA-XF-AAMG-01 12 13220178 13220178 G A KIAA1467 Missense_Mutation p.E364K 0.38 tolerated(0.39) benign(0.11) TCGA-XF-AAMG-01 12 13243742 13243742 G A GSG1 Missense_Mutation p.S20L 0.62 tolerated(0.15) benign(0.001) TCGA-XF-AAMG-01 12 18435583 18435583 G A PIK3C2G Missense_Mutation p.E190K 0.29 tolerated_low_confidence(0.2) benign(0.004) TCGA-XF-AAMG-01 12 22659673 22659673 C T C2CD5 Silent p.V373V 0.48 TCGA-XF-AAMG-01 12 23893848 23893848 C G SOX5 Missense_Mutation p.E232Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-XF-AAMG-01 12 25222348 25222348 G A LRMP Missense_Mutation p.D3N 0.64 tolerated_low_confidence(0.36) benign(0.011) TCGA-XF-AAMG-01 12 26217868 26217868 G A RASSF8 Missense_Mutation p.E181K 0.35 deleterious(0.01) benign(0.22) TCGA-XF-AAMG-01 12 28116438 28116438 C T PTHLH Missense_Mutation p.G123R 0.25 tolerated(0.11) probably_damaging(0.987) TCGA-XF-AAMG-01 12 28116560 28116560 G C PTHLH Missense_Mutation p.S82C 0.40 deleterious(0.02) possibly_damaging(0.868) TCGA-XF-AAMG-01 12 29659739 29659739 G T TMTC1 3'UTR 0.26 TCGA-XF-AAMG-01 12 30879020 30879020 C A CAPRIN2 Silent p.V595V 0.27 TCGA-XF-AAMG-01 12 30906641 30906641 C G CAPRIN2 Missense_Mutation p.K19N 0.61 deleterious_low_confidence(0.03) benign(0.007) TCGA-XF-AAMG-01 12 39967517 39967517 C A ABCD2 Splice_Site p.X668_splice 0.31 TCGA-XF-AAMG-01 12 40699701 40699701 C T LRRK2 Missense_Mutation p.P1298S 0.33 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 12 40714960 40714960 G C LRRK2 Missense_Mutation p.E1714Q 0.33 tolerated(0.07) possibly_damaging(0.908) TCGA-XF-AAMG-01 12 42717817 42717819 TTA - ZCRB1 Splice_Site p.X28_splice 0.15 TCGA-XF-AAMG-01 12 4763509 4763509 G T NDUFA9 Missense_Mutation p.R34L 0.21 deleterious(0.02) possibly_damaging(0.491) TCGA-XF-AAMG-01 12 49420049 49420049 C A KMT2D Nonsense_Mutation p.E5234* 0.36 TCGA-XF-AAMG-01 12 49484981 49484981 G T DHH Silent p.L165L 0.46 TCGA-XF-AAMG-01 12 49944051 49944051 C G KCNH3 Silent p.L619L 0.25 TCGA-XF-AAMG-01 12 51445984 51445984 G C LETMD1 Missense_Mutation p.L128F 0.17 deleterious(0.01) possibly_damaging(0.771) TCGA-XF-AAMG-01 12 51585391 51585391 G A POU6F1 Missense_Mutation p.S183L 0.51 deleterious(0) benign(0.011) TCGA-XF-AAMG-01 12 51851211 51851211 C G SLC4A8 Silent p.L217L 0.14 TCGA-XF-AAMG-01 12 53413805 53413805 G A EIF4B Missense_Mutation p.E158K 0.39 tolerated(0.13) unknown(0) TCGA-XF-AAMG-01 12 53647922 53647922 G C MFSD5 Missense_Mutation p.E542Q 0.19 tolerated(0.09) possibly_damaging(0.578) TCGA-XF-AAMG-01 12 53880265 53880265 T G MAP3K12 Missense_Mutation p.K196T 0.22 deleterious(0) probably_damaging(0.961) TCGA-XF-AAMG-01 12 54799070 54799070 G A ITGA5 Silent p.L369L 0.17 TCGA-XF-AAMG-01 12 56477581 56477581 G A ERBB3 Silent p.E43E 0.23 TCGA-XF-AAMG-01 12 56490340 56490340 C A ERBB3 Silent p.I703I 0.23 TCGA-XF-AAMG-01 12 56631103 56631103 C T SLC39A5 Silent p.L486L 0.61 TCGA-XF-AAMG-01 12 56739938 56739938 G C STAT2 Silent p.V698V 0.54 TCGA-XF-AAMG-01 12 57114317 57114317 C G NACA Missense_Mutation p.D333H 0.47 tolerated_low_confidence(0.06) benign(0.033) TCGA-XF-AAMG-01 12 57624779 57624779 C G SHMT2 Nonsense_Mutation p.S76* 0.31 TCGA-XF-AAMG-01 12 57861986 57861986 G T GLI1 Silent p.L429L 0.27 TCGA-XF-AAMG-01 12 58140800 58140800 G C TSPAN31 Splice_Site p.X149_splice 0.50 TCGA-XF-AAMG-01 12 58144740 58144740 C T CDK4 Missense_Mutation p.R163K 0.34 tolerated(0.47) benign(0.015) TCGA-XF-AAMG-01 12 6670229 6670229 C T NOP2 Silent p.L438L 0.26 TCGA-XF-AAMG-01 12 6679756 6679756 C T CHD4 3'UTR 0.40 TCGA-XF-AAMG-01 12 6679760 6679760 C G CHD4 3'UTR 0.44 TCGA-XF-AAMG-01 12 66923665 66923665 T C GRIP1 Missense_Mutation p.T150A 0.34 deleterious(0.01) benign(0.012) TCGA-XF-AAMG-01 12 6709440 6709440 G A CHD4 Silent p.V395V 0.27 TCGA-XF-AAMG-01 12 6711241 6711241 C T CHD4 Missense_Mutation p.S108N 0.14 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-XF-AAMG-01 12 6711254 6711254 C A CHD4 Missense_Mutation p.D104Y 0.11 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-XF-AAMG-01 12 6933622 6933622 G C GPR162 Missense_Mutation p.L186F 0.14 deleterious(0.05) probably_damaging(0.997) TCGA-XF-AAMG-01 12 7091056 7091056 G T LPCAT3 Missense_Mutation p.L126M 0.73 tolerated(0.15) possibly_damaging(0.718) TCGA-XF-AAMG-01 12 71960475 71960475 G A LGR5 Silent p.E331E 0.26 TCGA-XF-AAMG-01 12 77438534 77438534 T G E2F7 Missense_Mutation p.S291R 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 12 78444606 78444606 A G NAV3 Missense_Mutation p.N732S 0.33 tolerated(1) benign(0.001) TCGA-XF-AAMG-01 12 7848183 7848183 G A GDF3 Missense_Mutation p.P48S 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 12 8192631 8192631 G A FOXJ2 Missense_Mutation p.R68Q 0.32 deleterious(0.04) probably_damaging(0.979) TCGA-XF-AAMG-01 12 82147883 82147883 C G PPFIA2 Missense_Mutation p.D40H 0.17 deleterious(0) probably_damaging(0.979) TCGA-XF-AAMG-01 12 82783597 82783597 G T METTL25 Nonsense_Mutation p.E143* 0.05 TCGA-XF-AAMG-01 12 85517910 85517910 T C LRRIQ1 Missense_Mutation p.L1207P 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 12 9002789 9002789 C T A2ML1 Missense_Mutation p.S718L 0.21 tolerated(0.24) benign(0.004) TCGA-XF-AAMG-01 12 91366758 91366758 C G EPYC Splice_Site p.X114_splice 0.10 TCGA-XF-AAMG-01 12 94761893 94761893 C T CCDC41 Missense_Mutation p.R378H 0.16 deleterious(0) possibly_damaging(0.885) TCGA-XF-AAMG-01 12 95485586 95485586 C G FGD6 Splice_Site p.X1250_splice 0.22 TCGA-XF-AAMG-01 12 95676135 95676135 G A VEZT Missense_Mutation p.R348Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 12 96374449 96374449 C T HAL Silent p.E468E 0.47 TCGA-XF-AAMG-01 12 98850304 98850304 T C SLC9A7P1 RNA 0.53 TCGA-XF-AAMG-01 12 99126309 99126309 C A APAF1 Missense_Mutation p.L1238I 0.09 tolerated(0.53) benign(0.282) TCGA-XF-AAMG-01 12 993877 993877 C A WNK1 Missense_Mutation p.L1303I 0.42 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMG-01 13 100992415 100992415 C G PCCA Missense_Mutation p.H515Q 0.68 tolerated(0.66) benign(0.067) TCGA-XF-AAMG-01 13 103498693 103498693 T A ERCC5 Missense_Mutation p.I26N 0.10 deleterious(0) probably_damaging(0.95) TCGA-XF-AAMG-01 13 103498694 103498694 C G ERCC5 Missense_Mutation p.I26M 0.10 deleterious(0.03) possibly_damaging(0.575) TCGA-XF-AAMG-01 13 109707773 109707773 G T MYO16 Missense_Mutation p.K1033N 0.43 tolerated(0.45) benign(0.012) TCGA-XF-AAMG-01 13 115010387 115010387 C T CDC16 Missense_Mutation p.H264Y 0.42 deleterious(0) possibly_damaging(0.899) TCGA-XF-AAMG-01 13 21157160 21157160 T G IFT88 Splice_Site p.X60_splice 0.23 TCGA-XF-AAMG-01 13 25352430 25352430 C T RNF17 Intron 0.49 TCGA-XF-AAMG-01 13 25901111 25901111 G A NUPL1 Silent p.Q363Q 0.23 TCGA-XF-AAMG-01 13 28009853 28009853 C G MTIF3 Missense_Mutation p.D266H 0.35 deleterious(0.02) possibly_damaging(0.625) TCGA-XF-AAMG-01 13 36049796 36049796 C T MAB21L1 Silent p.L160L 0.17 TCGA-XF-AAMG-01 13 42407597 42407597 G A VWA8 Missense_Mutation p.S499L 0.50 deleterious(0) probably_damaging(0.986) TCGA-XF-AAMG-01 13 45148765 45148765 C T TSC22D1 Silent p.E482E 0.58 TCGA-XF-AAMG-01 13 78320913 78320913 C T SLAIN1 Missense_Mutation p.S230L 0.35 tolerated(0.71) unknown(0) TCGA-XF-AAMG-01 13 78475220 78475220 C G EDNRB Missense_Mutation p.Q398H 0.44 tolerated(0.06) probably_damaging(0.946) TCGA-XF-AAMG-01 13 95232204 95232204 G A TGDS Missense_Mutation p.P187S 0.43 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 14 102551192 102551192 C A HSP90AA1 Missense_Mutation p.K391N 0.20 tolerated_low_confidence(0.07) unknown(0) TCGA-XF-AAMG-01 14 102674982 102674982 C T WDR20 Missense_Mutation p.P190S 0.79 deleterious(0) possibly_damaging(0.901) TCGA-XF-AAMG-01 14 103395196 103395196 G A AMN Missense_Mutation p.E133K 0.28 deleterious(0) probably_damaging(0.915) TCGA-XF-AAMG-01 14 106110438 106110438 G A IGHG2 Missense_Mutation p.R100C 0.23 tolerated(0.14) benign(0.011) TCGA-XF-AAMG-01 14 106518436 106518436 C G IGHV3-7 Silent p.L105L 0.15 TCGA-XF-AAMG-01 14 106993947 106993947 C A IGHV3-48 Missense_Mutation p.S73I 0.27 deleterious_low_confidence(0.04) benign(0.008) TCGA-XF-AAMG-01 14 19378240 19378240 C A OR11H12 Missense_Mutation p.T216N 0.17 deleterious(0.03) benign(0.128) TCGA-XF-AAMG-01 14 20296372 20296372 C G OR4N2 Missense_Mutation p.I255M 0.12 tolerated(0.06) probably_damaging(0.961) TCGA-XF-AAMG-01 14 20876359 20876359 C G TEP1 Missense_Mutation p.Q80H 0.21 deleterious_low_confidence(0.03) benign(0.001) TCGA-XF-AAMG-01 14 21826583 21826583 C T SUPT16H Missense_Mutation p.E769K 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-XF-AAMG-01 14 21862207 21862207 G T CHD8 Missense_Mutation p.P1916H 0.42 deleterious(0.04) benign(0.005) TCGA-XF-AAMG-01 14 22315196 22315196 C G TRAV8-2 Nonsense_Mutation p.S45* 0.90 TCGA-XF-AAMG-01 14 22392823 22392823 G C TRAV14DV4 Missense_Mutation p.E116Q 0.23 TCGA-XF-AAMG-01 14 23374652 23374652 C G RBM23 Missense_Mutation p.D156H 0.30 deleterious(0) possibly_damaging(0.674) TCGA-XF-AAMG-01 14 23652248 23652248 C G SLC7A8 5'UTR 0.92 TCGA-XF-AAMG-01 14 31856387 31856387 C G HEATR5A Missense_Mutation p.K83N 0.26 deleterious(0) probably_damaging(0.984) TCGA-XF-AAMG-01 14 38678981 38678981 C G SSTR1 Silent p.L129L 0.16 TCGA-XF-AAMG-01 14 39782605 39782606 - A CTAGE5 Frame_Shift_Ins p.I426Dfs*6 0.17 TCGA-XF-AAMG-01 14 45716325 45716325 C G MIS18BP1 Missense_Mutation p.L55F 0.17 tolerated(0.28) benign(0.007) TCGA-XF-AAMG-01 14 56233110 56233110 C G RP11-813I20.2 Intron 0.82 TCGA-XF-AAMG-01 14 62213819 62213819 C T HIF1A 3'UTR 0.27 TCGA-XF-AAMG-01 14 64675598 64675598 G C SYNE2 Missense_Mutation p.Q6108H 0.10 probably_damaging(0.999) TCGA-XF-AAMG-01 14 67769223 67769223 G A MPP5 Missense_Mutation p.E300K 0.22 deleterious(0) probably_damaging(0.96) TCGA-XF-AAMG-01 14 71205053 71205053 C T MAP3K9 Missense_Mutation p.E585K 0.25 tolerated(0.4) possibly_damaging(0.775) TCGA-XF-AAMG-01 14 75538559 75538559 C A ZC2HC1C Missense_Mutation p.A428D 0.25 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 14 76107349 76107349 C G FLVCR2 Silent p.L429L 0.22 TCGA-XF-AAMG-01 14 76175608 76175608 C G TTLL5 Intron 0.16 TCGA-XF-AAMG-01 14 80668713 80668713 C G DIO2 3'Flank 0.26 TCGA-XF-AAMG-01 14 81659126 81659126 G A GTF2A1 Nonsense_Mutation p.Q224* 0.19 TCGA-XF-AAMG-01 14 88478274 88478274 G C GPR65 3'UTR 0.29 TCGA-XF-AAMG-01 14 91647612 91647612 C G C14orf159 Silent p.L271L 0.31 TCGA-XF-AAMG-01 14 96707272 96707272 G C BDKRB2 Missense_Mutation p.D203H 0.38 tolerated(0.08) possibly_damaging(0.901) TCGA-XF-AAMG-01 14 96707349 96707349 G C BDKRB2 Silent p.L228L 0.25 TCGA-XF-AAMG-01 14 96864415 96864415 C G AK7 Missense_Mutation p.L37V 0.37 deleterious(0.05) probably_damaging(0.927) TCGA-XF-AAMG-01 14 99924673 99924673 G C SETD3 Silent p.V206V 0.81 TCGA-XF-AAMG-01 14 99924699 99924699 G A SETD3 Nonsense_Mutation p.Q198* 0.86 TCGA-XF-AAMG-01 15 101170033 101170033 G C ASB7 Missense_Mutation p.Q201H 0.28 tolerated(0.06) possibly_damaging(0.749) TCGA-XF-AAMG-01 15 102462384 102462384 C T OR4F4 Silent p.R293R 0.50 TCGA-XF-AAMG-01 15 20662856 20662856 G A HERC2P3 RNA 0.15 TCGA-XF-AAMG-01 15 22369079 22369079 C T OR4M2 Silent p.F168F 0.08 TCGA-XF-AAMG-01 15 22935925 22935925 G A CYFIP1 Silent p.K287K 0.21 TCGA-XF-AAMG-01 15 31233696 31233696 C G MTMR10 Missense_Mutation p.E771Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 15 33927951 33927951 G A RYR3 Silent p.A1104A 0.41 TCGA-XF-AAMG-01 15 37100568 37100568 G C C15orf41 Missense_Mutation p.E254Q 0.11 deleterious(0.03) probably_damaging(0.919) TCGA-XF-AAMG-01 15 40383943 40383943 C T BMF 3'UTR 0.50 TCGA-XF-AAMG-01 15 40911175 40911175 C G CASC5 Missense_Mutation p.S140C 0.40 tolerated(1) benign(0.002) TCGA-XF-AAMG-01 15 41106387 41106387 C G ZFYVE19 Missense_Mutation p.S460C 0.22 deleterious(0.02) benign(0.062) TCGA-XF-AAMG-01 15 42003068 42003068 G C MGA Missense_Mutation p.D869H 0.34 tolerated(0.08) possibly_damaging(0.878) TCGA-XF-AAMG-01 15 42602935 42602935 C G GANC Silent p.V316V 0.43 TCGA-XF-AAMG-01 15 43622444 43622444 G C LCMT2 Missense_Mutation p.R82G 0.60 tolerated(0.12) benign(0.012) TCGA-XF-AAMG-01 15 44149182 44149182 C T WDR76 Silent p.D410D 0.13 TCGA-XF-AAMG-01 15 48063409 48063409 G A SEMA6D Silent p.L883L 0.67 TCGA-XF-AAMG-01 15 48537089 48537089 G C SLC12A1 Missense_Mutation p.M480I 0.14 tolerated(0.6) probably_damaging(0.928) TCGA-XF-AAMG-01 15 50785037 50785037 T C USP8 Silent p.L792L 0.51 TCGA-XF-AAMG-01 15 50867065 50867065 A G TRPM7 Missense_Mutation p.L1668P 0.41 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 15 52668631 52668631 C T MYO5A Missense_Mutation p.R778Q 0.29 deleterious(0) possibly_damaging(0.804) TCGA-XF-AAMG-01 15 56155208 56155208 G C NEDD4 Missense_Mutation p.L540V 0.66 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 15 63419769 63419769 C G LACTB Nonsense_Mutation p.S278* 0.36 TCGA-XF-AAMG-01 15 65490392 65490392 C A CILP Silent p.L744L 0.21 TCGA-XF-AAMG-01 15 65627716 65627716 G C IGDCC3 Missense_Mutation p.R200G 0.67 tolerated(0.17) benign(0.06) TCGA-XF-AAMG-01 15 66842425 66842425 G A LCTL Silent p.L514L 0.26 TCGA-XF-AAMG-01 15 73067323 73067323 C T ADPGK Missense_Mutation p.E117K 0.22 deleterious(0) benign(0.168) TCGA-XF-AAMG-01 15 73415041 73415041 C G NEO1 Missense_Mutation p.I208M 0.20 deleterious(0) possibly_damaging(0.661) TCGA-XF-AAMG-01 15 73536836 73536836 G A NEO1 Missense_Mutation p.E535K 0.72 deleterious(0) possibly_damaging(0.573) TCGA-XF-AAMG-01 15 74327519 74327519 G A PML Intron 0.62 TCGA-XF-AAMG-01 15 75340974 75340974 G A PPCDC Silent p.P147P 0.19 TCGA-XF-AAMG-01 15 75942026 75942026 G A SNX33 Missense_Mutation p.E195K 0.20 deleterious(0) probably_damaging(0.98) TCGA-XF-AAMG-01 15 77346558 77346558 C T TSPAN3 Missense_Mutation p.D132N 0.53 tolerated(0.39) benign(0.033) TCGA-XF-AAMG-01 15 83222700 83222700 G T CPEB1 Missense_Mutation p.P301T 0.31 deleterious(0.02) probably_damaging(0.917) TCGA-XF-AAMG-01 15 85200431 85200431 G A NMB Silent p.L102L 0.25 TCGA-XF-AAMG-01 15 90135393 90135393 G C TICRR Missense_Mutation p.L509F 0.40 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 15 90622891 90622891 G C ZNF710 Splice_Site p.X609_splice 0.20 TCGA-XF-AAMG-01 15 93588489 93588489 G T RGMA Nonsense_Mutation p.C372* 0.27 TCGA-XF-AAMG-01 15 94841903 94841903 G T MCTP2 Missense_Mutation p.G137C 0.12 deleterious(0.01) possibly_damaging(0.713) TCGA-XF-AAMG-01 16 11000924 11000924 C G CIITA Silent p.L525L 0.08 TCGA-XF-AAMG-01 16 11001260 11001260 C T CIITA Silent p.L637L 0.15 TCGA-XF-AAMG-01 16 11001294 11001294 G T CIITA Missense_Mutation p.A649S 0.24 tolerated(0.5) benign(0.206) TCGA-XF-AAMG-01 16 2026926 2026926 C T TBL3 Silent p.L468L 0.15 TCGA-XF-AAMG-01 16 2087585 2087585 C T SLC9A3R2 Missense_Mutation p.S280F 0.56 deleterious(0.03) benign(0.177) TCGA-XF-AAMG-01 16 20996461 20996461 T A DNAH3 Missense_Mutation p.R2535W 0.16 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMG-01 16 21288849 21288849 A G CRYM Missense_Mutation p.L76S 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 16 21475137 21475137 G C CTD-2547E10.2 RNA 0.24 TCGA-XF-AAMG-01 16 2155380 2155380 C T PKD1 Silent p.L2653L 0.38 TCGA-XF-AAMG-01 16 21995705 21995705 C T PDZD9 Silent p.V166V 0.21 TCGA-XF-AAMG-01 16 22358330 22358330 C G CDR2 Missense_Mutation p.D441H 0.23 tolerated(0.06) benign(0.045) TCGA-XF-AAMG-01 16 23700835 23700835 C T PLK1 Silent p.F482F 0.16 TCGA-XF-AAMG-01 16 23703541 23703541 C T ERN2 Missense_Mutation p.A786T 0.13 tolerated(0.53) benign(0.002) TCGA-XF-AAMG-01 16 24921678 24921678 C G SLC5A11 Missense_Mutation p.Q568E 0.14 tolerated(1) benign(0.002) TCGA-XF-AAMG-01 16 2813321 2813321 C T SRRM2 Missense_Mutation p.S931F 0.32 unknown(0) TCGA-XF-AAMG-01 16 2814304 2814304 G C SRRM2 Missense_Mutation p.E1259Q 0.08 unknown(0) TCGA-XF-AAMG-01 16 2814953 2814953 G C SRRM2 Missense_Mutation p.R1475T 0.12 unknown(0) TCGA-XF-AAMG-01 16 28922244 28922244 C A RABEP2 Missense_Mutation p.V352L 0.18 tolerated(0.36) benign(0.01) TCGA-XF-AAMG-01 16 29827965 29827965 C G PAGR1 Missense_Mutation p.S40C 0.24 deleterious(0.02) possibly_damaging(0.774) TCGA-XF-AAMG-01 16 29909261 29909261 C T SEZ6L2 Missense_Mutation p.E42K 0.24 tolerated(0.14) possibly_damaging(0.829) TCGA-XF-AAMG-01 16 30536399 30536399 G A ZNF768 Silent p.F354F 0.42 TCGA-XF-AAMG-01 16 30536747 30536747 G C ZNF768 Silent p.L238L 0.17 TCGA-XF-AAMG-01 16 30721175 30721175 G A SRCAP Missense_Mutation p.G287E 0.29 unknown(0) TCGA-XF-AAMG-01 16 30774794 30774794 C T RNF40 Missense_Mutation p.S119F 0.40 deleterious(0.05) benign(0.001) TCGA-XF-AAMG-01 16 31090692 31090692 C G ZNF646 Missense_Mutation p.S1016C 0.41 deleterious(0.01) possibly_damaging(0.726) TCGA-XF-AAMG-01 16 31092967 31092967 C T ZNF646 Silent p.I1774I 0.47 TCGA-XF-AAMG-01 16 48138256 48138256 G A ABCC12 Silent p.F899F 0.28 TCGA-XF-AAMG-01 16 48258268 48258268 C T ABCC11 Silent p.L156L 0.19 TCGA-XF-AAMG-01 16 53686816 53686816 C G RPGRIP1L Missense_Mutation p.D595H 0.24 deleterious(0) possibly_damaging(0.873) TCGA-XF-AAMG-01 16 56598963 56598963 G C MT4 5'UTR 0.56 TCGA-XF-AAMG-01 16 57080545 57080545 G A NLRC5 Silent p.R1110R 0.27 TCGA-XF-AAMG-01 16 58019362 58019362 C A TEPP Missense_Mutation p.P249T 0.18 tolerated_low_confidence(0.2) probably_damaging(0.958) TCGA-XF-AAMG-01 16 58568120 58568120 G C CNOT1 Silent p.L1942L 0.26 TCGA-XF-AAMG-01 16 61851636 61851636 G A CDH8 Missense_Mutation p.P342S 0.52 tolerated(0.06) probably_damaging(0.938) TCGA-XF-AAMG-01 16 64981420 64981421 GA TAG CDH11 3'UTR 0.25 TCGA-XF-AAMG-01 16 66969356 66969356 C T CES2 Nonsense_Mutation p.Q4* 0.26 TCGA-XF-AAMG-01 16 67650732 67650732 C A CTCF Missense_Mutation p.T346N 0.21 deleterious(0) possibly_damaging(0.798) TCGA-XF-AAMG-01 16 67692484 67692484 G C ACD Missense_Mutation p.S354C 0.15 tolerated(0.18) probably_damaging(0.994) TCGA-XF-AAMG-01 16 67697039 67697039 C T ENKD1 3'UTR 0.14 TCGA-XF-AAMG-01 16 68712168 68712168 G C CDH3 Missense_Mutation p.Q126H 0.24 deleterious(0.03) possibly_damaging(0.83) TCGA-XF-AAMG-01 16 69148786 69148786 G A HAS3 Missense_Mutation p.A427T 0.24 deleterious(0) probably_damaging(0.941) TCGA-XF-AAMG-01 16 69703975 69703975 C G NFAT5 Missense_Mutation p.L489V 0.41 probably_damaging(0.948) TCGA-XF-AAMG-01 16 72139993 72139993 G A DHX38 Silent p.R859R 0.50 TCGA-XF-AAMG-01 16 77317963 77317963 G C ADAMTS18 Missense_Mutation p.P1186A 0.24 tolerated(0.87) benign(0.004) TCGA-XF-AAMG-01 16 77323183 77323183 G C ADAMTS18 Missense_Mutation p.F1176L 0.21 tolerated(0.05) probably_damaging(0.983) TCGA-XF-AAMG-01 16 84050816 84050816 G A SLC38A8 Silent p.V294V 0.52 TCGA-XF-AAMG-01 16 84215205 84215205 C T TAF1C Missense_Mutation p.E367K 0.46 tolerated(0.09) benign(0.311) TCGA-XF-AAMG-01 16 8729108 8729108 G T METTL22 Silent p.G213G 0.07 TCGA-XF-AAMG-01 16 89613074 89613074 G A SPG7 Silent p.R486R 0.25 TCGA-XF-AAMG-01 16 89759837 89759837 C A CDK10 Silent p.V190V 0.29 TCGA-XF-AAMG-01 16 89986104 89986104 C T MC1R Silent p.I146I 0.38 TCGA-XF-AAMG-01 16 89986131 89986131 C T MC1R Silent p.I155I 0.42 TCGA-XF-AAMG-01 16 89986506 89986506 C A MC1R Missense_Mutation p.F280L 0.50 deleterious(0.01) benign(0.068) TCGA-XF-AAMG-01 16 8999111 8999111 A C USP7 Missense_Mutation p.D502E 0.11 tolerated(0.29) benign(0.007) TCGA-XF-AAMG-01 17 11648198 11648198 G A DNAH9 Missense_Mutation p.E2066K 0.81 probably_damaging(1) TCGA-XF-AAMG-01 17 11827226 11827226 G A DNAH9 Missense_Mutation p.A3949T 0.09 probably_damaging(0.977) TCGA-XF-AAMG-01 17 17697728 17697728 C G RAI1 Nonsense_Mutation p.S489* 0.73 TCGA-XF-AAMG-01 17 18881385 18881385 C G FAM83G Missense_Mutation p.E532Q 0.18 tolerated(0.53) benign(0.009) TCGA-XF-AAMG-01 17 19582149 19582149 G A SLC47A2 Silent p.F553F 0.92 TCGA-XF-AAMG-01 17 19812566 19812566 C G AKAP10 Missense_Mutation p.K637N 0.87 deleterious(0.01) benign(0.249) TCGA-XF-AAMG-01 17 2227639 2227639 C G TSR1 Missense_Mutation p.D756H 0.84 deleterious(0) probably_damaging(0.993) TCGA-XF-AAMG-01 17 26684320 26684320 G A POLDIP2 Missense_Mutation p.S51L 0.69 tolerated(0.34) benign(0.086) TCGA-XF-AAMG-01 17 26684894 26684894 G C TMEM199 Silent p.L67L 0.47 TCGA-XF-AAMG-01 17 26955544 26955544 G T KIAA0100 Missense_Mutation p.H1445N 0.65 tolerated(0.3) benign(0.296) TCGA-XF-AAMG-01 17 26961628 26961628 C T KIAA0100 Missense_Mutation p.E993K 0.32 deleterious(0.01) benign(0.071) TCGA-XF-AAMG-01 17 26962537 26962537 C G KIAA0100 Missense_Mutation p.D690H 0.35 tolerated(0.11) benign(0.004) TCGA-XF-AAMG-01 17 27224562 27224562 C T FLOT2 Missense_Mutation p.E11K 0.54 deleterious(0.05) benign(0.05) TCGA-XF-AAMG-01 17 27621103 27621103 G A NUFIP2 5'UTR 0.10 TCGA-XF-AAMG-01 17 27905371 27905371 C T GIT1 Missense_Mutation p.E286K 0.27 deleterious(0.03) possibly_damaging(0.478) TCGA-XF-AAMG-01 17 29162174 29162174 G A ATAD5 Missense_Mutation p.E359K 0.15 deleterious(0.01) probably_damaging(0.912) TCGA-XF-AAMG-01 17 29162512 29162512 G T ATAD5 Silent p.L471L 0.22 TCGA-XF-AAMG-01 17 29167722 29167722 G A ATAD5 Missense_Mutation p.E722K 0.16 deleterious(0.03) benign(0.111) TCGA-XF-AAMG-01 17 29663713 29663713 G T NF1 Nonsense_Mutation p.E2070* 0.62 TCGA-XF-AAMG-01 17 29663861 29663861 G C NF1 Missense_Mutation p.R2119T 0.55 deleterious(0) probably_damaging(0.942) TCGA-XF-AAMG-01 17 29664535 29664535 G A NF1 Missense_Mutation p.E2193K 0.57 tolerated(0.15) probably_damaging(0.914) TCGA-XF-AAMG-01 17 29665042 29665042 G T NF1 Splice_Site p.X2235_splice 0.54 TCGA-XF-AAMG-01 17 30358396 30358396 G T LRRC37B Splice_Site p.X632_splice 0.45 TCGA-XF-AAMG-01 17 37223922 37223922 C G PLXDC1 3'UTR 0.27 TCGA-XF-AAMG-01 17 37374337 37374337 G C STAC2 Silent p.L60L 0.40 TCGA-XF-AAMG-01 17 37579629 37579629 G A MED1 Missense_Mutation p.S349L 0.37 tolerated(0.28) possibly_damaging(0.681) TCGA-XF-AAMG-01 17 37627926 37627926 C G CDK12 Missense_Mutation p.S614C 0.13 probably_damaging(0.949) TCGA-XF-AAMG-01 17 3769143 3769143 C G CAMKK1 3'UTR 0.83 TCGA-XF-AAMG-01 17 37813329 37813329 C T STARD3 Silent p.F96F 0.49 TCGA-XF-AAMG-01 17 38027760 38027760 G T ZPBP2 Silent p.V96V 0.15 TCGA-XF-AAMG-01 17 38029353 38029353 G A ZPBP2 Missense_Mutation p.D228N 0.20 deleterious(0.05) benign(0.032) TCGA-XF-AAMG-01 17 38152557 38152557 C G PSMD3 Missense_Mutation p.S481C 0.16 deleterious(0.04) benign(0.111) TCGA-XF-AAMG-01 17 38856494 38856494 C T KRT24 Missense_Mutation p.E333K 0.61 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 17 39777017 39777017 C T KRT17 Missense_Mutation p.E359K 0.18 deleterious(0.02) benign(0.058) TCGA-XF-AAMG-01 17 4045836 4045836 C G ZZEF1 Missense_Mutation p.E118D 0.58 deleterious(0.01) possibly_damaging(0.496) TCGA-XF-AAMG-01 17 41267787 41267787 C A BRCA1 Missense_Mutation p.L30F 0.46 deleterious(0) probably_damaging(0.987) TCGA-XF-AAMG-01 17 41349006 41349006 G A NBR1 Missense_Mutation p.E637K 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 17 41958178 41958178 C T MPP2 Missense_Mutation p.R344H 0.11 deleterious(0) possibly_damaging(0.814) TCGA-XF-AAMG-01 17 43197695 43197695 G C PLCD3 Missense_Mutation p.F227L 0.52 deleterious(0.02) benign(0.149) TCGA-XF-AAMG-01 17 43333177 43333177 G C SPATA32 Missense_Mutation p.F124L 0.16 tolerated(0.58) benign(0.104) TCGA-XF-AAMG-01 17 44116392 44116392 C T KANSL1 Splice_Site p.X798_splice 0.61 TCGA-XF-AAMG-01 17 45199822 45199822 C G CDC27 Missense_Mutation p.E800Q 0.06 tolerated(0.39) benign(0.049) TCGA-XF-AAMG-01 17 45915651 45915651 C G SCRN2 Silent p.L368L 0.13 TCGA-XF-AAMG-01 17 47900569 47900569 G C KAT7 Missense_Mutation p.K464N 0.16 deleterious(0) probably_damaging(0.983) TCGA-XF-AAMG-01 17 48619005 48619005 C T EPN3 Missense_Mutation p.S512L 0.07 deleterious(0) benign(0.078) TCGA-XF-AAMG-01 17 48692736 48692736 C G CACNA1G Missense_Mutation p.P1592A 0.12 deleterious(0) possibly_damaging(0.684) TCGA-XF-AAMG-01 17 48797082 48797082 G T LUC7L3 5'UTR 0.33 TCGA-XF-AAMG-01 17 48797096 48797096 G C LUC7L3 Translation_Start_Site p.M1? 0.31 deleterious(0.04) benign(0.126) TCGA-XF-AAMG-01 17 49371317 49371317 G A UTP18 Silent p.K519K 0.25 TCGA-XF-AAMG-01 17 5365865 5365865 A T DHX33 Missense_Mutation p.V151D 0.11 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMG-01 17 55196373 55196373 C G AKAP1 Missense_Mutation p.L869V 0.34 deleterious(0) possibly_damaging(0.622) TCGA-XF-AAMG-01 17 56569117 56569117 G C MTMR4 Silent p.V1165V 0.37 TCGA-XF-AAMG-01 17 56573450 56573450 C G MTMR4 Missense_Mutation p.D685H 0.17 tolerated_low_confidence(0.06) benign(0.376) TCGA-XF-AAMG-01 17 57851161 57851161 G A VMP1 Missense_Mutation p.R210K 0.21 tolerated(0.34) possibly_damaging(0.598) TCGA-XF-AAMG-01 17 58150617 58150617 G C HEATR6 Missense_Mutation p.N164K 0.08 tolerated(1) benign(0) TCGA-XF-AAMG-01 17 59469572 59469572 C G BCAS3 3'UTR 0.25 TCGA-XF-AAMG-01 17 60613588 60613588 G A TLK2 Missense_Mutation p.E141K 0.18 tolerated_low_confidence(0.74) benign(0.149) TCGA-XF-AAMG-01 17 60613651 60613651 G C TLK2 Missense_Mutation p.E162Q 0.31 tolerated_low_confidence(0.57) benign(0.015) TCGA-XF-AAMG-01 17 62589584 62589584 G A SMURF2 Missense_Mutation p.A103V 0.41 tolerated(0.3) benign(0.007) TCGA-XF-AAMG-01 17 64219816 64219816 G C APOH Missense_Mutation p.P139A 0.14 tolerated(0.06) benign(0.003) TCGA-XF-AAMG-01 17 65733703 65733703 T C NOL11 Missense_Mutation p.I433T 0.28 tolerated(0.12) benign(0.008) TCGA-XF-AAMG-01 17 73132194 73132194 G C HN1 Missense_Mutation p.S150C 0.32 deleterious_low_confidence(0.03) benign(0.146) TCGA-XF-AAMG-01 17 73321993 73321993 G C GRB2 Missense_Mutation p.F95L 0.12 tolerated(0.06) benign(0.348) TCGA-XF-AAMG-01 17 74023346 74023346 G C EVPL 5'UTR 0.18 TCGA-XF-AAMG-01 17 7415626 7415626 G A POLR2A Silent p.E1485E 0.46 TCGA-XF-AAMG-01 17 74326126 74326126 C A PRPSAP1 Missense_Mutation p.K211N 0.14 tolerated(0.08) benign(0.209) TCGA-XF-AAMG-01 17 7504834 7504834 C G FXR2 Missense_Mutation p.E185Q 0.89 deleterious(0.01) possibly_damaging(0.557) TCGA-XF-AAMG-01 17 7577022 7577023 - C TP53 Frame_Shift_Ins p.R306Afs*31 0.47 TCGA-XF-AAMG-01 17 76116614 76116614 C T TMC6 Intron 0.31 TCGA-XF-AAMG-01 17 76447615 76447615 C G DNAH17 Missense_Mutation p.G3543A 0.16 probably_damaging(0.991) TCGA-XF-AAMG-01 17 76456023 76456023 C T DNAH17 Missense_Mutation p.A3152T 0.11 benign(0.207) TCGA-XF-AAMG-01 17 76988795 76988795 G C CANT1 3'UTR 0.25 TCGA-XF-AAMG-01 17 77984049 77984049 G T TBC1D16 Nonsense_Mutation p.S230* 0.25 TCGA-XF-AAMG-01 17 77984208 77984208 G C TBC1D16 Missense_Mutation p.S177W 0.54 deleterious(0.02) possibly_damaging(0.6) TCGA-XF-AAMG-01 17 78014039 78014039 G A CCDC40 Silent p.Q174Q 0.17 TCGA-XF-AAMG-01 17 79846238 79846238 C G ALYREF Missense_Mutation p.G220A 0.22 tolerated(0.13) possibly_damaging(0.832) TCGA-XF-AAMG-01 17 79848579 79848579 C G ALYREF Missense_Mutation p.D126H 0.12 deleterious(0.02) possibly_damaging(0.735) TCGA-XF-AAMG-01 17 80574476 80574476 C G WDR45B Missense_Mutation p.W284C 0.13 deleterious(0) probably_damaging(0.971) TCGA-XF-AAMG-01 17 953843 953843 G A ABR Silent p.F531F 0.72 TCGA-XF-AAMG-01 18 10487671 10487671 G T APCDD1 Missense_Mutation p.G394V 0.20 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 18 117058 117058 G A ROCK1P1 RNA 0.56 TCGA-XF-AAMG-01 18 12686287 12686287 G A CEP76 Silent p.L366L 0.08 TCGA-XF-AAMG-01 18 13096282 13096282 C T CEP192 Missense_Mutation p.P2178L 0.52 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 18 21478795 21478795 G A LAMA3 Missense_Mutation p.E1903K 0.15 benign(0.016) TCGA-XF-AAMG-01 18 21758017 21758017 C T OSBPL1A Missense_Mutation p.E685K 0.83 deleterious(0.01) probably_damaging(0.996) TCGA-XF-AAMG-01 18 21758039 21758039 C G OSBPL1A Silent p.L677L 0.79 TCGA-XF-AAMG-01 18 22804440 22804440 C T ZNF521 Missense_Mutation p.E1148K 0.84 deleterious(0.01) benign(0.003) TCGA-XF-AAMG-01 18 2538957 2538957 G A METTL4 3'UTR 0.34 TCGA-XF-AAMG-01 18 3457825 3457825 C T TGIF1 Missense_Mutation p.P365S 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-AAMG-01 18 34854476 34854476 G A CELF4 Intron 0.97 TCGA-XF-AAMG-01 18 42532026 42532026 C T SETBP1 Silent p.S907S 0.37 TCGA-XF-AAMG-01 18 43438026 43438026 C G EPG5 Missense_Mutation p.E2412Q 0.64 tolerated(0.76) benign(0) TCGA-XF-AAMG-01 18 48703656 48703656 T C MEX3C Missense_Mutation p.I349V 0.21 deleterious(0.01) probably_damaging(0.968) TCGA-XF-AAMG-01 18 50731614 50731614 G A DCC Silent p.L534L 0.30 TCGA-XF-AAMG-01 18 673090 673090 G T TYMS 3'UTR 0.13 TCGA-XF-AAMG-01 18 674233 674233 T A ENOSF1 3'UTR 0.09 TCGA-XF-AAMG-01 18 6947177 6947177 C T LAMA1 Silent p.E2943E 0.23 TCGA-XF-AAMG-01 18 6985609 6985609 G C LAMA1 Missense_Mutation p.L1805V 0.12 tolerated(0.3) benign(0.012) TCGA-XF-AAMG-01 18 74561553 74561553 A G ZNF236 Missense_Mutation p.I41V 0.41 tolerated(0.26) benign(0.279) TCGA-XF-AAMG-01 18 74563775 74563775 C G ZNF236 Missense_Mutation p.F79L 0.25 tolerated(0.2) possibly_damaging(0.885) TCGA-XF-AAMG-01 18 76973997 76973997 G C ATP9B Missense_Mutation p.E356Q 0.45 tolerated(0.25) probably_damaging(0.974) TCGA-XF-AAMG-01 18 9134252 9134252 G C NDUFV2 Missense_Mutation p.G242A 0.12 deleterious(0.04) possibly_damaging(0.899) TCGA-XF-AAMG-01 18 9134278 9134278 T A NDUFV2 3'UTR 0.13 TCGA-XF-AAMG-01 18 9547829 9547829 T G PPP4R1 Missense_Mutation p.K937N 0.12 tolerated(0.66) benign(0.083) TCGA-XF-AAMG-01 19 10600444 10600444 G A KEAP1 Missense_Mutation p.L471F 0.09 tolerated(0.09) benign(0.131) TCGA-XF-AAMG-01 19 11135087 11135087 G C SMARCA4 Silent p.L1018L 0.26 TCGA-XF-AAMG-01 19 11553317 11553317 G C PRKCSH Missense_Mutation p.Q195H 0.50 tolerated(0.11) benign(0.396) TCGA-XF-AAMG-01 19 1223161 1223161 C T STK11 Silent p.F366F 0.45 TCGA-XF-AAMG-01 19 13065319 13065319 G A GADD45GIP1 Silent p.C124C 0.33 TCGA-XF-AAMG-01 19 13888905 13888905 G A C19orf53 Missense_Mutation p.V65M 0.48 tolerated(0.09) possibly_damaging(0.541) TCGA-XF-AAMG-01 19 14673366 14673366 G A TECR Silent p.E15E 0.45 TCGA-XF-AAMG-01 19 14952135 14952135 G C OR7A10 Silent p.V185V 0.14 TCGA-XF-AAMG-01 19 1584575 1584575 C G MBD3 Missense_Mutation p.K124N 0.22 deleterious(0.03) possibly_damaging(0.894) TCGA-XF-AAMG-01 19 16060058 16060058 C G OR10H4 Missense_Mutation p.R81G 0.22 deleterious(0) possibly_damaging(0.574) TCGA-XF-AAMG-01 19 19014200 19014200 G C COPE Missense_Mutation p.I204M 0.29 deleterious(0) probably_damaging(0.975) TCGA-XF-AAMG-01 19 19032502 19032502 C T DDX49 Silent p.F90F 0.21 TCGA-XF-AAMG-01 19 19654678 19654678 C T CILP2 Missense_Mutation p.R442C 0.50 deleterious(0) probably_damaging(0.927) TCGA-XF-AAMG-01 19 20308411 20308411 G C ZNF486 Missense_Mutation p.E298Q 0.32 deleterious(0.02) possibly_damaging(0.706) TCGA-XF-AAMG-01 19 20727966 20727966 C G ZNF737 Missense_Mutation p.R348T 0.26 deleterious(0) benign(0.139) TCGA-XF-AAMG-01 19 21934166 21934166 G C ZNF100 Intron 0.15 TCGA-XF-AAMG-01 19 23329259 23329259 G C ZNF730 Missense_Mutation p.K471N 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-XF-AAMG-01 19 32971371 32971371 G C DPY19L3 Missense_Mutation p.D633H 0.52 tolerated(0.06) benign(0.371) TCGA-XF-AAMG-01 19 33457303 33457303 G C CEP89 Missense_Mutation p.P37A 0.19 deleterious(0) possibly_damaging(0.639) TCGA-XF-AAMG-01 19 35657167 35657167 C G FXYD5 Silent p.L142L 0.55 TCGA-XF-AAMG-01 19 35657174 35657174 C T FXYD5 Missense_Mutation p.R145W 0.29 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMG-01 19 36368637 36368637 G T APLP1 Nonsense_Mutation p.E488* 0.20 TCGA-XF-AAMG-01 19 3644145 3644145 G A PIP5K1C Missense_Mutation p.R484W 0.68 deleterious(0.04) possibly_damaging(0.88) TCGA-XF-AAMG-01 19 38090568 38090568 G A ZNF540 Silent p.Q17Q 0.23 TCGA-XF-AAMG-01 19 38861316 38861316 G A CATSPERG Missense_Mutation p.G1122R 0.19 tolerated(0.79) probably_damaging(0.98) TCGA-XF-AAMG-01 19 39379741 39379741 G A SIRT2 Missense_Mutation p.R163C 0.18 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 19 39515985 39515985 C T FBXO27 3'UTR 0.24 TCGA-XF-AAMG-01 19 39866292 39866292 C T SAMD4B Missense_Mutation p.L224F 0.64 tolerated(0.24) benign(0.005) TCGA-XF-AAMG-01 19 40519967 40519967 C T ZNF546 Missense_Mutation p.H264Y 0.15 deleterious(0) benign(0.009) TCGA-XF-AAMG-01 19 41111518 41111518 C T LTBP4 Missense_Mutation p.S284L 0.18 deleterious(0) probably_damaging(0.959) TCGA-XF-AAMG-01 19 41131821 41131821 C G LTBP4 Missense_Mutation p.R1364G 0.40 tolerated(0.18) probably_damaging(0.916) TCGA-XF-AAMG-01 19 41634022 41634022 G T CYP2F1 3'UTR 0.82 TCGA-XF-AAMG-01 19 42396277 42396277 G C ARHGEF1 Intron 0.22 TCGA-XF-AAMG-01 19 42407864 42407864 C G ARHGEF1 Silent p.L630L 0.17 TCGA-XF-AAMG-01 19 44012177 44012177 G C ETHE1 Missense_Mutation p.L211V 0.19 deleterious(0.02) benign(0.313) TCGA-XF-AAMG-01 19 44492647 44492647 C G ZNF155 5'UTR 0.14 TCGA-XF-AAMG-01 19 44662362 44662362 G A ZNF234 3'UTR 0.19 TCGA-XF-AAMG-01 19 44981055 44981055 G A ZNF180 Missense_Mutation p.P548L 0.21 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 19 4540033 4540033 C T LRG1 5'UTR 0.60 TCGA-XF-AAMG-01 19 45860736 45860736 G C ERCC2 Missense_Mutation p.S458C 0.10 deleterious(0.01) benign(0.234) TCGA-XF-AAMG-01 19 45924530 45924530 C T ERCC1 Missense_Mutation p.C76Y 0.25 tolerated(0.34) benign(0.002) TCGA-XF-AAMG-01 19 46347367 46347367 C G SYMPK Silent p.A256A 0.17 TCGA-XF-AAMG-01 19 46404903 46404903 C T MYPOP Silent p.Q43Q 0.33 TCGA-XF-AAMG-01 19 47425290 47425290 C T ARHGAP35 Missense_Mutation p.R1120W 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 19 47951368 47951368 C G SLC8A2 Silent p.V487V 0.29 TCGA-XF-AAMG-01 19 48220244 48220244 C G EHD2 Silent p.L125L 0.20 TCGA-XF-AAMG-01 19 48630536 48630536 C G LIG1 Missense_Mutation p.E668Q 0.42 tolerated(0.15) benign(0.014) TCGA-XF-AAMG-01 19 48733889 48733889 G A CARD8 Missense_Mutation p.P281S 0.11 deleterious(0.04) probably_damaging(0.986) TCGA-XF-AAMG-01 19 48994491 48994491 C G LMTK3 Missense_Mutation p.E1443Q 0.73 unknown(0) TCGA-XF-AAMG-01 19 49129355 49129356 CC - SPHK2 Frame_Shift_Del p.P83* 0.13 TCGA-XF-AAMG-01 19 49363620 49363620 C T PLEKHA4 Missense_Mutation p.E155K 0.19 deleterious(0) benign(0.41) TCGA-XF-AAMG-01 19 49813717 49813717 G C SLC6A16 Missense_Mutation p.L156V 0.50 deleterious(0) possibly_damaging(0.71) TCGA-XF-AAMG-01 19 51165475 51165475 G A SHANK1 Missense_Mutation p.P2078L 0.24 unknown(0) TCGA-XF-AAMG-01 19 51506201 51506201 C T KLK9 3'UTR 0.42 TCGA-XF-AAMG-01 19 5231330 5231330 C T PTPRS Missense_Mutation p.D716N 0.25 tolerated(0.21) possibly_damaging(0.678) TCGA-XF-AAMG-01 19 52659766 52659766 T G ZNF836 Silent p.I390I 0.21 TCGA-XF-AAMG-01 19 52887595 52887595 C G ZNF880 Silent p.L254L 0.10 TCGA-XF-AAMG-01 19 53014691 53014691 A T ZNF578 Missense_Mutation p.S353C 0.12 deleterious(0.05) possibly_damaging(0.474) TCGA-XF-AAMG-01 19 53085944 53085944 G C ZNF701 Missense_Mutation p.R277T 0.26 tolerated(0.11) benign(0.288) TCGA-XF-AAMG-01 19 53270909 53270909 A G ZNF600 Missense_Mutation p.F34L 0.15 tolerated(0.35) benign(0.01) TCGA-XF-AAMG-01 19 53453358 53453358 C T ZNF816 Missense_Mutation p.R557K 0.22 tolerated(0.15) probably_damaging(0.963) TCGA-XF-AAMG-01 19 55329821 55329821 G A KIR3DL1 Missense_Mutation p.R41Q 0.34 tolerated(0.8) benign(0.001) TCGA-XF-AAMG-01 19 55814064 55814064 G C BRSK1 Splice_Site p.X286_splice 0.28 TCGA-XF-AAMG-01 19 56473488 56473488 G C NLRP8 Missense_Mutation p.A700P 0.17 tolerated(0.27) benign(0.265) TCGA-XF-AAMG-01 19 56538741 56538741 G A NLRP5 Nonsense_Mutation p.W381* 0.17 TCGA-XF-AAMG-01 19 5684914 5684914 C G HSD11B1L Missense_Mutation p.P24R 0.63 deleterious(0.01) probably_damaging(0.959) TCGA-XF-AAMG-01 19 56935485 56935485 T C ZNF583 Silent p.H486H 0.20 TCGA-XF-AAMG-01 19 57066493 57066493 C G ZFP28 Missense_Mutation p.S780C 0.26 deleterious(0.01) possibly_damaging(0.663) TCGA-XF-AAMG-01 19 57326218 57326218 C A PEG3 Missense_Mutation p.D1198Y 0.25 tolerated(0.08) probably_damaging(0.91) TCGA-XF-AAMG-01 19 5733907 5733907 C A CATSPERD Nonsense_Mutation p.S106* 0.63 TCGA-XF-AAMG-01 19 5783359 5783359 G C PRR22 Missense_Mutation p.S300C 0.64 deleterious(0.01) benign(0.163) TCGA-XF-AAMG-01 19 5784089 5784089 G A CTB-54O9.9 3'UTR 0.68 TCGA-XF-AAMG-01 19 57910026 57910026 A T ZNF548 Missense_Mutation p.Q136L 0.19 deleterious(0.01) benign(0.073) TCGA-XF-AAMG-01 19 58132527 58132527 T G ZNF134 Missense_Mutation p.I347S 0.16 tolerated(0.86) benign(0.008) TCGA-XF-AAMG-01 19 58361437 58361437 C G ZNF587 Missense_Mutation p.Q11E 0.17 tolerated(0.28) benign(0.001) TCGA-XF-AAMG-01 19 5843866 5843866 G A FUT3 Missense_Mutation p.R329C 0.33 tolerated(0.11) benign(0.03) TCGA-XF-AAMG-01 19 58600181 58600181 C A ZSCAN18 Missense_Mutation p.G199C 0.08 deleterious(0.02) possibly_damaging(0.754) TCGA-XF-AAMG-01 19 58965805 58965805 C A ZNF324B Intron 0.38 TCGA-XF-AAMG-01 19 58988700 58988700 G A ZNF446 Missense_Mutation p.G39S 0.20 deleterious(0.03) probably_damaging(0.971) TCGA-XF-AAMG-01 19 6713197 6713197 C T C3 Intron 0.20 TCGA-XF-AAMG-01 19 6829822 6829822 C G VAV1 Missense_Mutation p.L431V 0.39 tolerated(1) benign(0.134) TCGA-XF-AAMG-01 19 6837032 6837032 C G VAV1 Missense_Mutation p.P651A 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 19 7267624 7267624 G C INSR Silent p.L128L 0.17 TCGA-XF-AAMG-01 19 7764684 7764684 C G FCER2 5'UTR 0.31 TCGA-XF-AAMG-01 19 8038730 8038730 G C ELAVL1 Missense_Mutation p.I103M 0.41 deleterious(0) probably_damaging(0.917) TCGA-XF-AAMG-01 19 8151210 8151210 C G FBN3 Splice_Site p.X2252_splice 0.62 TCGA-XF-AAMG-01 19 9524978 9524978 G A ZNF266 Missense_Mutation p.S208L 0.53 tolerated(0.44) benign(0.014) TCGA-XF-AAMG-01 19 9584997 9584997 G A ZNF560 Missense_Mutation p.S12F 0.27 deleterious_low_confidence(0) benign(0.007) TCGA-XF-AAMG-01 1 100316667 100316667 C G AGL Missense_Mutation p.F23L 0.21 deleterious(0.02) benign(0.005) TCGA-XF-AAMG-01 1 10231366 10231366 G A UBE4B Silent p.A1168A 0.28 TCGA-XF-AAMG-01 1 10292471 10292471 C T KIF1B Nonsense_Mutation p.Q29* 0.23 TCGA-XF-AAMG-01 1 103343652 103343652 C G COL11A1 Missense_Mutation p.D1782H 0.48 unknown(0) TCGA-XF-AAMG-01 1 103544320 103544320 C A COL11A1 Missense_Mutation p.G128C 0.17 probably_damaging(1) TCGA-XF-AAMG-01 1 10684455 10684455 G C PEX14 Missense_Mutation p.Q182H 0.33 deleterious(0.01) probably_damaging(0.931) TCGA-XF-AAMG-01 1 10725291 10725291 G A CASZ1 Silent p.P118P 0.25 TCGA-XF-AAMG-01 1 109794399 109794399 T C CELSR2 Silent p.A566A 0.19 TCGA-XF-AAMG-01 1 110168397 110168397 G C AMPD2 Missense_Mutation p.Q166H 0.13 tolerated(0.09) possibly_damaging(0.797) TCGA-XF-AAMG-01 1 111216586 111216586 C T KCNA3 Silent p.S282S 0.13 TCGA-XF-AAMG-01 1 114092178 114092178 C G MAGI3 Missense_Mutation p.Q120E 0.29 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMG-01 1 115168462 115168462 C G DENND2C Silent p.V48V 0.20 TCGA-XF-AAMG-01 1 11854846 11854846 G C MTHFR Missense_Mutation p.S369C 0.24 tolerated(0.06) benign(0.027) TCGA-XF-AAMG-01 1 119958163 119958163 G A HSD3B2 Missense_Mutation p.E41K 0.67 tolerated(0.17) benign(0.026) TCGA-XF-AAMG-01 1 1238301 1238301 C T ACAP3 Splice_Site p.X93_splice 0.24 TCGA-XF-AAMG-01 1 1334467 1334467 C G CCNL2 Missense_Mutation p.E74Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 1 13910251 13910251 G C PDPN 5'UTR 0.30 TCGA-XF-AAMG-01 1 144863443 144863443 C T PDE4DIP Splice_Site p.X1987_splice 0.10 TCGA-XF-AAMG-01 1 144921851 144921851 G C PDE4DIP Missense_Mutation p.S393C 0.04 deleterious(0) probably_damaging(0.93) TCGA-XF-AAMG-01 1 144930642 144930642 G A PDE4DIP Intron 0.14 TCGA-XF-AAMG-01 1 145440093 145440093 G T TXNIP Missense_Mutation p.G176V 0.09 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 1 145473612 145473612 C T ANKRD34A Missense_Mutation p.S95L 0.72 deleterious(0) benign(0.131) TCGA-XF-AAMG-01 1 147086363 147086363 C T BCL9 Nonsense_Mutation p.Q170* 0.25 TCGA-XF-AAMG-01 1 149858219 149858219 C G HIST2H2BE 5'UTR 0.08 TCGA-XF-AAMG-01 1 150941457 150941457 G A CERS2 Missense_Mutation p.S37L 0.17 tolerated(0.51) benign(0.295) TCGA-XF-AAMG-01 1 150960608 150960608 G T ANXA9 Nonsense_Mutation p.E247* 0.69 TCGA-XF-AAMG-01 1 151259025 151259025 C G ZNF687 Silent p.V86V 0.15 TCGA-XF-AAMG-01 1 151400727 151400727 G A POGZ Missense_Mutation p.S244F 0.70 deleterious(0.01) possibly_damaging(0.781) TCGA-XF-AAMG-01 1 152329387 152329387 T A FLG2 Missense_Mutation p.Q292L 0.09 unknown(0) TCGA-XF-AAMG-01 1 152329499 152329499 G A FLG2 Nonsense_Mutation p.Q255* 0.72 TCGA-XF-AAMG-01 1 152552044 152552044 C G LCE3D 3'UTR 0.93 TCGA-XF-AAMG-01 1 152957769 152957769 G A SPRR1A Silent p.V21V 0.73 TCGA-XF-AAMG-01 1 153748374 153748374 C T SLC27A3 Missense_Mutation p.A181V 0.12 tolerated_low_confidence(0.23) benign(0.002) TCGA-XF-AAMG-01 1 153932807 153932807 A T SLC39A1 Missense_Mutation p.C248S 0.77 tolerated(0.12) benign(0.001) TCGA-XF-AAMG-01 1 153995751 153995751 C G NUP210L Missense_Mutation p.R1382P 0.13 deleterious(0) possibly_damaging(0.738) TCGA-XF-AAMG-01 1 154130121 154130121 C T NUP210L 5'Flank 0.27 TCGA-XF-AAMG-01 1 154956263 154956263 C G FLAD1 Silent p.L31L 0.07 TCGA-XF-AAMG-01 1 156347196 156347196 G T RHBG Missense_Mutation p.A98S 0.12 tolerated(0.11) benign(0.096) TCGA-XF-AAMG-01 1 156502824 156502824 C T IQGAP3 Missense_Mutation p.E1351K 0.25 deleterious(0.02) possibly_damaging(0.515) TCGA-XF-AAMG-01 1 156646949 156646949 G C NES Silent p.L36L 0.21 TCGA-XF-AAMG-01 1 156899116 156899116 G A LRRC71 Silent p.K347K 0.68 TCGA-XF-AAMG-01 1 156926341 156926341 G A ARHGEF11 Silent p.F514F 0.20 TCGA-XF-AAMG-01 1 157789886 157789886 C T FCRL1 5'UTR 0.61 TCGA-XF-AAMG-01 1 15807668 15807668 C G CELA2B Missense_Mutation p.L69V 0.20 tolerated(0.06) possibly_damaging(0.583) TCGA-XF-AAMG-01 1 158151502 158151502 C T CD1D Missense_Mutation p.R107C 0.21 deleterious(0) possibly_damaging(0.545) TCGA-XF-AAMG-01 1 158326653 158326653 G C CD1E Missense_Mutation p.K378N 0.17 deleterious_low_confidence(0.01) benign(0.034) TCGA-XF-AAMG-01 1 158389928 158389928 A G OR10K2 Silent p.S243S 0.11 TCGA-XF-AAMG-01 1 158621223 158621223 G C SPTA1 Missense_Mutation p.I1137M 0.17 tolerated(0.44) probably_damaging(0.978) TCGA-XF-AAMG-01 1 159015215 159015215 G C IFI16 Missense_Mutation p.Q486H 0.18 tolerated(0.12) possibly_damaging(0.542) TCGA-XF-AAMG-01 1 159901642 159901642 G C IGSF9 Missense_Mutation p.S441C 0.08 deleterious(0.01) possibly_damaging(0.841) TCGA-XF-AAMG-01 1 160268719 160268719 C T COPA Silent p.K640K 0.08 TCGA-XF-AAMG-01 1 160389175 160389175 C T VANGL2 Silent p.L192L 0.11 TCGA-XF-AAMG-01 1 160720209 160720209 A T SLAMF7 Missense_Mutation p.Q255H 0.11 tolerated(0.16) benign(0.332) TCGA-XF-AAMG-01 1 161173249 161173249 G C NDUFS2 Missense_Mutation p.D40H 0.18 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-XF-AAMG-01 1 170961402 170961402 G A MROH9 Missense_Mutation p.E376K 0.67 deleterious(0.02) benign(0.159) TCGA-XF-AAMG-01 1 170967362 170967362 G A MROH9 Missense_Mutation p.E515K 0.30 tolerated(0.08) benign(0.397) TCGA-XF-AAMG-01 1 172017794 172017794 C G DNM3 Silent p.V413V 0.10 TCGA-XF-AAMG-01 1 173915918 173915918 G C RC3H1 Missense_Mutation p.Q932E 0.39 tolerated(0.08) benign(0.031) TCGA-XF-AAMG-01 1 176838029 176838029 C G ASTN1 Missense_Mutation p.E1200Q 0.27 deleterious(0.03) benign(0.017) TCGA-XF-AAMG-01 1 177198996 177198996 A C BRINP2 5'UTR 0.41 TCGA-XF-AAMG-01 1 177198997 177198997 A T BRINP2 5'UTR 0.41 TCGA-XF-AAMG-01 1 178442400 178442400 G A RASAL2 3'UTR 0.37 TCGA-XF-AAMG-01 1 183617838 183617838 C T APOBEC4 Missense_Mutation p.D27N 0.28 tolerated(0.39) benign(0.035) TCGA-XF-AAMG-01 1 185815205 185815205 G A HMCN1 Missense_Mutation p.E106K 0.46 probably_damaging(0.973) TCGA-XF-AAMG-01 1 19491806 19491806 C G UBR4 Missense_Mutation p.E1417Q 0.28 benign(0.332) TCGA-XF-AAMG-01 1 196887337 196887337 C T CFHR4 Intron 0.44 TCGA-XF-AAMG-01 1 202272447 202272447 C T LGR6 Missense_Mutation p.L324F 0.28 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMG-01 1 204938035 204938035 G C NFASC Missense_Mutation p.D310H 0.37 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 1 205589786 205589786 G C ELK4 Missense_Mutation p.Q130E 0.26 tolerated(1) benign(0.028) TCGA-XF-AAMG-01 1 207651253 207651253 G T CR2 Missense_Mutation p.D976Y 0.28 tolerated(1) benign(0.008) TCGA-XF-AAMG-01 1 208269445 208269445 C G PLXNA2 Silent p.L637L 0.53 TCGA-XF-AAMG-01 1 224345445 224345445 G C FBXO28 Missense_Mutation p.K368N 0.18 deleterious_low_confidence(0) unknown(0) TCGA-XF-AAMG-01 1 227171616 227171616 C T ADCK3 Intron 0.44 TCGA-XF-AAMG-01 1 228482504 228482504 G T OBSCN Missense_Mutation p.D4236Y 0.23 possibly_damaging(0.587) TCGA-XF-AAMG-01 1 228646052 228646052 C T HIST3H2BB Silent p.I74I 0.19 TCGA-XF-AAMG-01 1 229654095 229654095 C T ABCB10 Missense_Mutation p.R683K 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-XF-AAMG-01 1 229795119 229795119 G A URB2 3'UTR 0.27 TCGA-XF-AAMG-01 1 231094046 231094046 C G TTC13 Splice_Site p.X123_splice 0.58 TCGA-XF-AAMG-01 1 232942750 232942750 G A MAP10 Missense_Mutation p.E661K 0.35 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 1 235275406 235275406 C G TOMM20 Missense_Mutation p.Q137H 0.16 deleterious(0.03) benign(0.002) TCGA-XF-AAMG-01 1 235972598 235972598 G A LYST Missense_Mutation p.S507F 0.46 deleterious(0) probably_damaging(0.943) TCGA-XF-AAMG-01 1 23698032 23698032 G A C1orf213 3'UTR 0.18 TCGA-XF-AAMG-01 1 237948022 237948022 C G RYR2 Missense_Mutation p.P4337R 0.40 probably_damaging(1) TCGA-XF-AAMG-01 1 24194638 24194638 G A FUCA1 Missense_Mutation p.R47W 0.54 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 1 2447048 2447048 G C PANK4 Missense_Mutation p.L443V 0.08 tolerated(0.25) benign(0.017) TCGA-XF-AAMG-01 1 248129321 248129321 C G OR2AK2 Missense_Mutation p.L230V 0.88 tolerated(0.62) benign(0.26) TCGA-XF-AAMG-01 1 27212530 27212530 G C GPN2 Silent p.L221L 0.64 TCGA-XF-AAMG-01 1 28337541 28337541 C G EYA3 Missense_Mutation p.D276H 0.51 deleterious(0) possibly_damaging(0.736) TCGA-XF-AAMG-01 1 28929948 28929948 C T TAF12 3'UTR 0.71 TCGA-XF-AAMG-01 1 31188814 31188814 G C MATN1 Missense_Mutation p.F383L 0.27 deleterious(0.04) probably_damaging(0.954) TCGA-XF-AAMG-01 1 34164410 34164410 G A CSMD2 Silent p.L1250L 0.35 TCGA-XF-AAMG-01 1 35862236 35862236 C G ZMYM4 Missense_Mutation p.Q999E 0.33 deleterious(0.01) possibly_damaging(0.772) TCGA-XF-AAMG-01 1 36492815 36492815 G C AGO3 Missense_Mutation p.E503Q 0.18 deleterious(0.01) benign(0.159) TCGA-XF-AAMG-01 1 36550494 36550494 G T TEKT2 5'UTR 0.12 TCGA-XF-AAMG-01 1 36766540 36766540 C T THRAP3 Missense_Mutation p.S786L 0.38 deleterious(0.03) probably_damaging(0.943) TCGA-XF-AAMG-01 1 36766618 36766618 C G THRAP3 Nonsense_Mutation p.S812* 0.23 TCGA-XF-AAMG-01 1 37282701 37282701 T A GRIK3 Missense_Mutation p.Y684F 0.20 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 1 3746369 3746369 C G CEP104 Missense_Mutation p.D677H 0.19 tolerated(0.14) benign(0.013) TCGA-XF-AAMG-01 1 38174037 38174037 G C CDCA8 Nonstop_Mutation p.*281Sext*10 0.36 TCGA-XF-AAMG-01 1 39466745 39466745 G C AKIRIN1 Missense_Mutation p.E155Q 0.27 tolerated(0.12) probably_damaging(0.999) TCGA-XF-AAMG-01 1 39876235 39876235 G A KIAA0754 5'UTR 0.66 TCGA-XF-AAMG-01 1 40535382 40535382 G C CAP1 Missense_Mutation p.D277H 0.25 deleterious(0) probably_damaging(0.951) TCGA-XF-AAMG-01 1 40704504 40704504 A C RLF Missense_Mutation p.K1377T 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-XF-AAMG-01 1 43637208 43637208 G C EBNA1BP2 Missense_Mutation p.Q144E 0.15 tolerated(0.35) benign(0.003) TCGA-XF-AAMG-01 1 43638559 43638559 G C WDR65 Missense_Mutation p.Q45H 0.16 deleterious(0.05) possibly_damaging(0.82) TCGA-XF-AAMG-01 1 44086515 44086515 C G PTPRF Missense_Mutation p.Q1791E 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-XF-AAMG-01 1 46072242 46072242 G C NASP Missense_Mutation p.E130Q 0.59 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMG-01 1 48688475 48688475 C G SLC5A9 Missense_Mutation p.P23A 0.10 tolerated(0.08) benign(0.034) TCGA-XF-AAMG-01 1 50666804 50666804 G C ELAVL4 Missense_Mutation p.R369T 0.65 deleterious(0) probably_damaging(0.951) TCGA-XF-AAMG-01 1 51875223 51875223 G A EPS15 Missense_Mutation p.A420V 0.14 deleterious(0.04) benign(0.169) TCGA-XF-AAMG-01 1 52344258 52344258 G A NRD1 Silent p.V10V 0.82 TCGA-XF-AAMG-01 1 52704088 52704088 C G ZFYVE9 Silent p.L333L 0.22 TCGA-XF-AAMG-01 1 52828355 52828355 C T CC2D1B Missense_Mutation p.D45N 0.32 deleterious(0.04) possibly_damaging(0.867) TCGA-XF-AAMG-01 1 54511386 54511386 G A TMEM59 Silent p.F123F 0.17 TCGA-XF-AAMG-01 1 60491135 60491135 C G C1orf87 Silent p.L355L 0.64 TCGA-XF-AAMG-01 1 62704011 62704011 G C KANK4 Missense_Mutation p.H976D 0.20 deleterious(0) benign(0.021) TCGA-XF-AAMG-01 1 63085603 63085603 G C DOCK7 Missense_Mutation p.S496C 0.34 deleterious(0.05) possibly_damaging(0.873) TCGA-XF-AAMG-01 1 66723491 66723491 C T PDE4B Nonsense_Mutation p.R177* 0.23 TCGA-XF-AAMG-01 1 68512852 68512852 G T DIRAS3 Silent p.V43V 0.16 TCGA-XF-AAMG-01 1 74507267 74507267 G A LRRIQ3 Nonsense_Mutation p.R450* 0.45 TCGA-XF-AAMG-01 1 75037875 75037875 C T C1orf173 Silent p.L1173L 0.39 TCGA-XF-AAMG-01 1 75199049 75199049 G A TYW3 Missense_Mutation p.D41N 0.41 tolerated(0.09) benign(0.026) TCGA-XF-AAMG-01 1 7858709 7858709 G C PER3 Missense_Mutation p.E256Q 0.30 deleterious(0.01) possibly_damaging(0.727) TCGA-XF-AAMG-01 1 85548061 85548061 G A WDR63 Missense_Mutation p.E122K 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-XF-AAMG-01 1 86047954 86047954 G A CYR61 Silent p.L207L 0.17 TCGA-XF-AAMG-01 1 87038347 87038347 G A CLCA4 Missense_Mutation p.D471N 0.19 deleterious(0.04) possibly_damaging(0.656) TCGA-XF-AAMG-01 1 89318782 89318782 A C GTF2B 3'UTR 0.16 TCGA-XF-AAMG-01 1 89449490 89449490 G C RBMXL1 Missense_Mutation p.P7R 0.13 deleterious(0) probably_damaging(0.962) TCGA-XF-AAMG-01 1 89618403 89618403 A G GBP7 Missense_Mutation p.F126L 0.19 tolerated(0.11) benign(0.32) TCGA-XF-AAMG-01 1 899304 899304 G C KLHL17 Missense_Mutation p.E454Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 1 90398747 90398747 C A LRRC8D Silent p.I40I 0.43 TCGA-XF-AAMG-01 1 94018058 94018058 C T FNBP1L 3'UTR 0.67 TCGA-XF-AAMG-01 1 97278384 97278384 G C PTBP2 Missense_Mutation p.D430H 0.57 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMG-01 20 10603419 10603419 G A SLX4IP Missense_Mutation p.D207N 0.58 tolerated(0.22) benign(0.003) TCGA-XF-AAMG-01 20 11904179 11904179 C G BTBD3 Silent p.L478L 0.24 TCGA-XF-AAMG-01 20 13074192 13074192 C G SPTLC3 Nonsense_Mutation p.S265* 0.18 TCGA-XF-AAMG-01 20 18143099 18143099 C T CSRP2BP Missense_Mutation p.S394F 0.59 tolerated(0.12) benign(0.003) TCGA-XF-AAMG-01 20 18297069 18297069 G A ZNF133 Missense_Mutation p.R524Q 0.33 tolerated(0.19) benign(0.017) TCGA-XF-AAMG-01 20 18429630 18429630 G C DZANK1 Silent p.L209L 0.27 TCGA-XF-AAMG-01 20 1963681 1963681 G T PDYN Missense_Mutation p.S17Y 0.78 deleterious(0.01) possibly_damaging(0.51) TCGA-XF-AAMG-01 20 19665800 19665800 C G SLC24A3 Missense_Mutation p.I373M 0.32 tolerated(0.13) benign(0.416) TCGA-XF-AAMG-01 20 23433294 23433294 G A CST11 Missense_Mutation p.T52I 0.16 tolerated(0.49) benign(0.047) TCGA-XF-AAMG-01 20 23967152 23967152 C T GGTLC1 Missense_Mutation p.D33N 0.15 tolerated(0.47) benign(0.026) TCGA-XF-AAMG-01 20 24523847 24523847 T A SYNDIG1 Silent p.G38G 0.27 TCGA-XF-AAMG-01 20 278867 278867 G C ZCCHC3 Missense_Mutation p.D214H 0.59 deleterious(0.03) probably_damaging(0.999) TCGA-XF-AAMG-01 20 2845881 2845881 G A VPS16 Missense_Mutation p.D698N 0.16 tolerated(0.06) benign(0.166) TCGA-XF-AAMG-01 20 30556314 30556314 C T XKR7 Silent p.F112F 0.47 TCGA-XF-AAMG-01 20 31424539 31424539 G A MAPRE1 Missense_Mutation p.D123N 0.48 deleterious(0.04) benign(0.003) TCGA-XF-AAMG-01 20 33567554 33567554 G A MYH7B Missense_Mutation p.E139K 0.16 probably_damaging(0.947) TCGA-XF-AAMG-01 20 34053885 34053885 G C CEP250 Silent p.V116V 0.52 TCGA-XF-AAMG-01 20 34091856 34091856 G A CEP250 Missense_Mutation p.E1887K 0.44 probably_damaging(0.999) TCGA-XF-AAMG-01 20 34302204 34302204 C G RBM39 Silent p.S333S 0.17 TCGA-XF-AAMG-01 20 34505449 34505449 G C PHF20 Missense_Mutation p.W623C 0.26 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 20 35060934 35060934 G A DLGAP4 Missense_Mutation p.A272T 0.38 tolerated(0.38) benign(0.072) TCGA-XF-AAMG-01 20 37002625 37002625 C G LBP Missense_Mutation p.Q457E 0.45 tolerated(0.07) benign(0.015) TCGA-XF-AAMG-01 20 37400462 37400462 G T ACTR5 3'UTR 0.38 TCGA-XF-AAMG-01 20 3779056 3779056 C G CDC25B Intron 0.24 TCGA-XF-AAMG-01 20 44053208 44053208 C T PIGT Silent p.L491L 0.56 TCGA-XF-AAMG-01 20 44180702 44180702 G C WFDC8 Nonsense_Mutation p.S230* 0.13 TCGA-XF-AAMG-01 20 44527645 44527645 C T PLTP Missense_Mutation p.E473K 0.23 deleterious(0.02) benign(0.211) TCGA-XF-AAMG-01 20 44665958 44665958 C T SLC12A5 Silent p.L205L 0.28 TCGA-XF-AAMG-01 20 50051831 50051831 G A NFATC2 Silent p.I642I 0.18 TCGA-XF-AAMG-01 20 50241826 50241826 T A ATP9A Missense_Mutation p.M641L 0.34 tolerated(0.16) benign(0.011) TCGA-XF-AAMG-01 20 5095983 5095983 C T PCNA Missense_Mutation p.M244I 0.18 tolerated(0.48) benign(0.017) TCGA-XF-AAMG-01 20 61341030 61341030 C G NTSR1 Silent p.L157L 0.28 TCGA-XF-AAMG-01 20 61488776 61488776 C G TCFL5 Missense_Mutation p.E403D 0.49 deleterious(0.01) probably_damaging(0.996) TCGA-XF-AAMG-01 20 61542370 61542370 C T DIDO1 Missense_Mutation p.E199K 0.27 benign(0.014) TCGA-XF-AAMG-01 20 62305348 62305348 C T RTEL1 Missense_Mutation p.S298L 0.19 deleterious(0.05) probably_damaging(0.947) TCGA-XF-AAMG-01 20 62493565 62493565 C T ABHD16B Silent p.D224D 0.36 TCGA-XF-AAMG-01 20 744569 744569 C T SLC52A3 Missense_Mutation p.A216T 0.18 deleterious(0.04) possibly_damaging(0.716) TCGA-XF-AAMG-01 20 9288540 9288540 G C PLCB4 Missense_Mutation p.E27Q 0.21 deleterious(0.04) benign(0.043) TCGA-XF-AAMG-01 21 15481298 15481298 G A LIPI 3'UTR 0.28 TCGA-XF-AAMG-01 21 15561473 15561475 TCT - LIPI In_Frame_Del p.E125del 0.19 TCGA-XF-AAMG-01 21 15746515 15746515 G C HSPA13 Missense_Mutation p.S280C 0.30 deleterious(0.03) probably_damaging(0.93) TCGA-XF-AAMG-01 21 28296360 28296360 C T ADAMTS5 3'UTR 0.17 TCGA-XF-AAMG-01 21 32624274 32624274 C T TIAM1 Missense_Mutation p.E399K 0.58 deleterious(0.02) possibly_damaging(0.509) TCGA-XF-AAMG-01 21 33060745 33060745 C T SCAF4 Missense_Mutation p.E640K 0.24 possibly_damaging(0.678) TCGA-XF-AAMG-01 21 34956930 34956930 C G DONSON Missense_Mutation p.D251H 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 21 37584327 37584327 C G DOPEY2 Nonsense_Mutation p.S279* 0.51 TCGA-XF-AAMG-01 21 42809005 42809005 G C MX1 Missense_Mutation p.R121T 0.31 tolerated(0.29) benign(0.005) TCGA-XF-AAMG-01 21 42809037 42809037 G A MX1 Missense_Mutation p.E132K 0.25 tolerated(0.12) benign(0.002) TCGA-XF-AAMG-01 21 43412266 43412266 G A ZBTB21 Nonsense_Mutation p.Q647* 0.20 TCGA-XF-AAMG-01 21 43524190 43524190 C T UMODL1 Silent p.R504R 0.32 TCGA-XF-AAMG-01 21 45876462 45876462 G A LRRC3 5'UTR 0.33 TCGA-XF-AAMG-01 22 16279204 16279204 C G POTEH Missense_Mutation p.R340T 0.04 tolerated(0.08) benign(0.393) TCGA-XF-AAMG-01 22 17589412 17589412 G C IL17RA Missense_Mutation p.E435Q 0.06 tolerated(0.07) probably_damaging(0.995) TCGA-XF-AAMG-01 22 19188998 19188998 C T CLTCL1 Missense_Mutation p.D1203N 0.20 deleterious(0.03) benign(0.3) TCGA-XF-AAMG-01 22 19511530 19511530 G A CLDN5 Silent p.L168L 0.45 TCGA-XF-AAMG-01 22 21158593 21158593 G C PI4KA Missense_Mutation p.L486V 0.16 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMG-01 22 21354170 21354170 C T THAP7 Silent p.%3D 0.48 TCGA-XF-AAMG-01 22 23047190 23047190 C A IGLV3-22 Silent p.I76I 0.49 TCGA-XF-AAMG-01 22 24040399 24040399 G T RGL4 Nonsense_Mutation p.E421* 0.22 TCGA-XF-AAMG-01 22 29627030 29627030 G C EMID1 Missense_Mutation p.E163Q 0.47 deleterious(0.05) benign(0.098) TCGA-XF-AAMG-01 22 30090752 30090752 G A NF2 Silent p.Q583Q 0.21 TCGA-XF-AAMG-01 22 30640749 30640749 G A LIF Missense_Mutation p.L65F 0.19 tolerated(0.12) possibly_damaging(0.573) TCGA-XF-AAMG-01 22 36894043 36894043 C T FOXRED2 Silent p.L459L 0.53 TCGA-XF-AAMG-01 22 36920006 36920006 C G EIF3D Missense_Mutation p.D110H 0.41 deleterious(0.05) possibly_damaging(0.796) TCGA-XF-AAMG-01 22 38245426 38245426 C G EIF3L 5'UTR 0.57 TCGA-XF-AAMG-01 22 38864307 38864307 C G KDELR3 Missense_Mutation p.I23M 0.49 tolerated(0.22) benign(0.275) TCGA-XF-AAMG-01 22 39123215 39123215 C G GTPBP1 Intron 0.12 TCGA-XF-AAMG-01 22 39813725 39813725 C G TAB1 Missense_Mutation p.Q141E 0.23 tolerated(0.41) benign(0.007) TCGA-XF-AAMG-01 22 39822732 39822732 G A TAB1 Missense_Mutation p.E316K 0.25 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 22 39822733 39822733 A G TAB1 Missense_Mutation p.E316G 0.25 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 22 41726098 41726098 G C ZC3H7B Missense_Mutation p.K172N 0.25 deleterious(0.02) probably_damaging(0.95) TCGA-XF-AAMG-01 22 42475829 42475829 C T SMDT1 Silent p.L19L 0.41 TCGA-XF-AAMG-01 22 43272946 43272946 C T PACSIN2 Missense_Mutation p.E367K 0.27 tolerated(0.54) possibly_damaging(0.725) TCGA-XF-AAMG-01 22 44074037 44074037 C T EFCAB6 Missense_Mutation p.D420N 0.54 tolerated(0.32) benign(0.009) TCGA-XF-AAMG-01 22 44335884 44335884 G C PNPLA3 Missense_Mutation p.E331Q 0.33 deleterious(0.05) benign(0) TCGA-XF-AAMG-01 2 101023084 101023084 G A CHST10 Silent p.F18F 0.18 TCGA-XF-AAMG-01 2 103353179 103353179 C A MFSD9 Nonsense_Mutation p.E31* 0.68 TCGA-XF-AAMG-01 2 109382490 109382490 C T RANBP2 Missense_Mutation p.S1832F 0.10 deleterious(0.03) possibly_damaging(0.73) TCGA-XF-AAMG-01 2 112838974 112838974 C G TMEM87B Silent p.A239A 0.08 TCGA-XF-AAMG-01 2 112873711 112873711 G C TMEM87B Missense_Mutation p.K553N 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XF-AAMG-01 2 112896280 112896280 C T FBLN7 Silent p.L16L 0.18 TCGA-XF-AAMG-01 2 113310243 113310243 G A POLR1B Silent p.L336L 0.12 TCGA-XF-AAMG-01 2 113498568 113498568 A C CKAP2L Silent p.S613S 0.23 TCGA-XF-AAMG-01 2 114398958 114398958 C G RABL2A Missense_Mutation p.F145L 0.51 deleterious(0.04) possibly_damaging(0.893) TCGA-XF-AAMG-01 2 120720270 120720270 G A PTPN4 Missense_Mutation p.E787K 0.29 tolerated(0.17) benign(0.041) TCGA-XF-AAMG-01 2 125521564 125521564 G A CNTNAP5 Nonsense_Mutation p.W790* 0.36 TCGA-XF-AAMG-01 2 128046289 128046289 C T ERCC3 Missense_Mutation p.R325Q 0.12 deleterious(0.03) possibly_damaging(0.862) TCGA-XF-AAMG-01 2 128246769 128246769 C G IWS1 Silent p.L734L 0.43 TCGA-XF-AAMG-01 2 128408720 128408720 C G GPR17 Silent p.V165V 0.12 TCGA-XF-AAMG-01 2 133542950 133542950 C T NCKAP5 Silent p.A478A 0.51 TCGA-XF-AAMG-01 2 135625281 135625281 C T ACMSD Intron 0.26 TCGA-XF-AAMG-01 2 136528229 136528229 G C UBXN4 Missense_Mutation p.R249T 0.20 deleterious(0.03) benign(0.033) TCGA-XF-AAMG-01 2 1507765 1507765 C G TPO Missense_Mutation p.S811C 0.08 deleterious(0) probably_damaging(0.992) TCGA-XF-AAMG-01 2 162890154 162890154 C T DPP4 Missense_Mutation p.V262M 0.58 tolerated(0.1) benign(0.379) TCGA-XF-AAMG-01 2 165550885 165550885 G A COBLL1 Missense_Mutation p.S1044L 0.57 tolerated(0.08) benign(0.033) TCGA-XF-AAMG-01 2 168067398 168067398 C G XIRP2 Missense_Mutation p.S239C 0.17 possibly_damaging(0.482) TCGA-XF-AAMG-01 2 170063339 170063339 C A LRP2 Missense_Mutation p.L2297F 0.18 probably_damaging(0.999) TCGA-XF-AAMG-01 2 175213658 175213658 G C CIR1 Missense_Mutation p.S307C 0.26 tolerated_low_confidence(0.06) benign(0.147) TCGA-XF-AAMG-01 2 179399820 179399820 G A TTN Missense_Mutation p.S33841L 0.30 TCGA-XF-AAMG-01 2 179403763 179403763 C G TTN Missense_Mutation p.E32967Q 0.67 TCGA-XF-AAMG-01 2 1795683 1795683 G C MYT1L Missense_Mutation p.L1171V 0.10 deleterious(0.01) probably_damaging(0.948) TCGA-XF-AAMG-01 2 179650829 179650829 C T TTN Missense_Mutation p.V706I 0.67 TCGA-XF-AAMG-01 2 179664373 179664373 T G TTN Missense_Mutation p.K252T 0.34 TCGA-XF-AAMG-01 2 179701663 179701663 A G CCDC141 Missense_Mutation p.L1428S 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 2 180308037 180308037 C G ZNF385B Silent p.L452L 0.39 TCGA-XF-AAMG-01 2 182400225 182400225 T A ITGA4 Missense_Mutation p.Y1024N 0.09 deleterious(0) possibly_damaging(0.851) TCGA-XF-AAMG-01 2 185800633 185800633 G A ZNF804A Silent p.L170L 0.18 TCGA-XF-AAMG-01 2 189918184 189918184 C T COL5A2 Missense_Mutation p.G840E 0.18 unknown(0) TCGA-XF-AAMG-01 2 191555069 191555069 C G NAB1 3'UTR 0.63 TCGA-XF-AAMG-01 2 1926395 1926395 G T MYT1L Silent p.L382L 0.21 TCGA-XF-AAMG-01 2 197657793 197657793 C T GTF3C3 Missense_Mutation p.E100K 0.30 tolerated_low_confidence(0.08) benign(0.129) TCGA-XF-AAMG-01 2 198495896 198495896 G T RFTN2 Nonsense_Mutation p.S256* 0.21 TCGA-XF-AAMG-01 2 201845951 201845951 C A FAM126B 3'UTR 0.10 TCGA-XF-AAMG-01 2 203160445 203160464 TTGGAGCTGAAAAGGCACTT - NOP58 Frame_Shift_Del p.G320Qfs*6 0.47 TCGA-XF-AAMG-01 2 20508167 20508167 C G PUM2 Missense_Mutation p.E233Q 0.13 tolerated_low_confidence(0.06) benign(0.379) TCGA-XF-AAMG-01 2 205990413 205990413 A C PARD3B Silent p.A462A 0.57 TCGA-XF-AAMG-01 2 213921671 213921671 C G IKZF2 Missense_Mutation p.E98Q 0.47 tolerated(0.18) benign(0.405) TCGA-XF-AAMG-01 2 215855516 215855516 G A ABCA12 Silent p.I1178I 0.37 TCGA-XF-AAMG-01 2 218920 218920 C G SH3YL1 Missense_Mutation p.G307A 0.11 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 2 218994 218994 C T SH3YL1 Silent p.L282L 0.18 TCGA-XF-AAMG-01 2 219353050 219353050 C G USP37 Missense_Mutation p.D523H 0.38 deleterious(0.01) possibly_damaging(0.896) TCGA-XF-AAMG-01 2 219508671 219508671 C A ZNF142 Missense_Mutation p.R856S 0.35 deleterious(0) possibly_damaging(0.537) TCGA-XF-AAMG-01 2 219647124 219647124 C T CYP27A1 Silent p.F73F 0.15 TCGA-XF-AAMG-01 2 220147585 220147585 C G DNAJB2 Missense_Mutation p.Q127E 0.25 tolerated(0.3) probably_damaging(0.977) TCGA-XF-AAMG-01 2 220435211 220435211 G A OBSL1 Silent p.L248L 0.19 TCGA-XF-AAMG-01 2 224462539 224462539 C G SCG2 Missense_Mutation p.E488Q 0.37 deleterious(0.02) possibly_damaging(0.685) TCGA-XF-AAMG-01 2 231102947 231102947 G C SP140 Missense_Mutation p.R86T 0.40 tolerated(0.08) benign(0.407) TCGA-XF-AAMG-01 2 231988454 231988454 C T HTR2B Missense_Mutation p.E9K 0.31 deleterious_low_confidence(0.05) probably_damaging(0.985) TCGA-XF-AAMG-01 2 234102460 234102460 G A INPP5D Missense_Mutation p.E805K 0.31 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 2 234102591 234102591 G C INPP5D Silent p.T848T 0.40 TCGA-XF-AAMG-01 2 234296988 234296988 C T DGKD Missense_Mutation p.T81M 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-XF-AAMG-01 2 234854657 234854657 C G TRPM8 Missense_Mutation p.S286C 0.24 deleterious(0) probably_damaging(0.935) TCGA-XF-AAMG-01 2 241465165 241465165 G A ANKMY1 Silent p.L335L 0.30 TCGA-XF-AAMG-01 2 25016373 25016373 G T CENPO Intron 0.62 TCGA-XF-AAMG-01 2 26686859 26686859 G C OTOF Silent p.L1692L 0.14 TCGA-XF-AAMG-01 2 27464071 27464071 C T CAD Silent p.S1928S 0.13 TCGA-XF-AAMG-01 2 27464072 27464072 G T CAD Missense_Mutation p.V1929F 0.13 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMG-01 2 27730127 27730127 C A GCKR Silent p.L364L 0.28 TCGA-XF-AAMG-01 2 29404523 29404523 C G CLIP4 Missense_Mutation p.Q628E 0.15 deleterious(0.01) possibly_damaging(0.73) TCGA-XF-AAMG-01 2 29451912 29451912 C T ALK Missense_Mutation p.D885N 0.41 tolerated(0.05) probably_damaging(0.997) TCGA-XF-AAMG-01 2 33749089 33749089 A T RASGRP3 Missense_Mutation p.E220D 0.14 tolerated(0.19) benign(0.009) TCGA-XF-AAMG-01 2 38177618 38177618 G C RMDN2 5'UTR 0.18 TCGA-XF-AAMG-01 2 39278342 39278342 C T SOS1 Missense_Mutation p.M269I 0.33 tolerated(0.18) possibly_damaging(0.645) TCGA-XF-AAMG-01 2 39509681 39509681 A C MAP4K3 Missense_Mutation p.N534K 0.35 deleterious(0.01) benign(0.345) TCGA-XF-AAMG-01 2 47382486 47382486 C G C2orf61 5'UTR 0.60 TCGA-XF-AAMG-01 2 51255032 51255032 G A NRXN1 Missense_Mutation p.T127M 0.13 tolerated(0.27) benign(0.062) TCGA-XF-AAMG-01 2 53955975 53955975 C T ASB3 Missense_Mutation p.E195K 0.25 deleterious(0.03) possibly_damaging(0.902) TCGA-XF-AAMG-01 2 55481208 55481208 T G MTIF2 Silent p.G211G 0.11 TCGA-XF-AAMG-01 2 55792114 55792114 C T SMEK2 Missense_Mutation p.E667K 0.42 deleterious(0.04) benign(0.007) TCGA-XF-AAMG-01 2 55816047 55816047 C G SMEK2 Missense_Mutation p.E323Q 0.12 tolerated(0.07) possibly_damaging(0.555) TCGA-XF-AAMG-01 2 55825572 55825572 C G SMEK2 Missense_Mutation p.E301Q 0.36 deleterious(0.01) benign(0.37) TCGA-XF-AAMG-01 2 55844415 55844415 C G SMEK2 Missense_Mutation p.D3H 0.50 deleterious(0) possibly_damaging(0.806) TCGA-XF-AAMG-01 2 56603026 56603026 G T CCDC85A Missense_Mutation p.A510S 0.22 tolerated_low_confidence(0.45) benign(0.002) TCGA-XF-AAMG-01 2 62449702 62449702 T A B3GNT2 Missense_Mutation p.F116Y 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAMG-01 2 63401847 63401847 C T WDPCP Missense_Mutation p.R679K 0.23 tolerated(0.38) benign(0.002) TCGA-XF-AAMG-01 2 69204869 69204869 G A GKN1 Missense_Mutation p.G70E 0.51 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 2 71043751 71043751 G C CLEC4F Missense_Mutation p.I254M 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-XF-AAMG-01 2 71658555 71658555 G T ZNF638 Nonsense_Mutation p.E1917* 0.31 TCGA-XF-AAMG-01 2 73717376 73717376 C G ALMS1 Missense_Mutation p.L2763V 0.24 probably_damaging(0.978) TCGA-XF-AAMG-01 2 73718051 73718051 C G ALMS1 Missense_Mutation p.Q2988E 0.27 benign(0.079) TCGA-XF-AAMG-01 2 73718361 73718361 C G ALMS1 Missense_Mutation p.S3091W 0.28 probably_damaging(1) TCGA-XF-AAMG-01 2 73718362 73718362 G A ALMS1 Silent p.S3091S 0.27 TCGA-XF-AAMG-01 2 73718600 73718600 G C ALMS1 Missense_Mutation p.E3171Q 0.28 probably_damaging(0.988) TCGA-XF-AAMG-01 2 74057971 74057971 G C STAMBP Splice_Site 0.32 TCGA-XF-AAMG-01 2 74438391 74438391 C A MTHFD2 Missense_Mutation p.L246I 0.29 tolerated(0.26) benign(0.084) TCGA-XF-AAMG-01 2 74477548 74477548 G C SLC4A5 Missense_Mutation p.I525M 0.15 deleterious(0.01) possibly_damaging(0.882) TCGA-XF-AAMG-01 2 75115131 75115131 A T HK2 Missense_Mutation p.E774V 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 2 85590234 85590234 G A ELMOD3 Silent p.K48K 0.60 TCGA-XF-AAMG-01 2 85781345 85781345 G C GGCX Silent p.L270L 0.16 TCGA-XF-AAMG-01 2 90060907 90060907 G T IGKV6D-21 Missense_Mutation p.G85V 0.51 deleterious(0.01) possibly_damaging(0.856) TCGA-XF-AAMG-01 2 90139536 90139536 G A IGKV1D-16 Missense_Mutation p.E103K 0.06 deleterious(0.01) probably_damaging(0.93) TCGA-XF-AAMG-01 2 95815496 95815496 G A ZNF514 Missense_Mutation p.S245L 0.13 tolerated(0.09) benign(0.143) TCGA-XF-AAMG-01 2 96934351 96934351 C T CIAO1 Missense_Mutation p.R216C 0.16 tolerated(0.06) benign(0.006) TCGA-XF-AAMG-01 2 97007492 97007492 C T NCAPH Silent p.L44L 0.21 TCGA-XF-AAMG-01 2 98349602 98349602 G T ZAP70 Silent p.L239L 0.28 TCGA-XF-AAMG-01 3 100467244 100467244 C T TFG Nonsense_Mutation p.Q358* 0.38 TCGA-XF-AAMG-01 3 108276153 108276153 C G KIAA1524 Missense_Mutation p.E708Q 0.27 tolerated(0.07) probably_damaging(0.979) TCGA-XF-AAMG-01 3 111632261 111632261 G C PHLDB2 Missense_Mutation p.Q477H 0.45 deleterious(0.03) probably_damaging(0.984) TCGA-XF-AAMG-01 3 113135451 113135451 G A WDR52 Silent p.F198F 0.40 TCGA-XF-AAMG-01 3 115395448 115395448 G A GAP43 Missense_Mutation p.E243K 0.31 deleterious(0.02) possibly_damaging(0.893) TCGA-XF-AAMG-01 3 121100203 121100203 C G STXBP5L Missense_Mutation p.S828C 0.20 deleterious(0.01) possibly_damaging(0.852) TCGA-XF-AAMG-01 3 122044200 122044200 G A CSTA Missense_Mutation p.D21N 0.14 tolerated(0.28) benign(0.003) TCGA-XF-AAMG-01 3 122146548 122146548 C T KPNA1 Silent p.L422L 0.17 TCGA-XF-AAMG-01 3 122433155 122433155 G C PARP14 Missense_Mutation p.L1293F 0.23 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMG-01 3 122943996 122943996 T C SEC22A Silent p.S131S 0.24 TCGA-XF-AAMG-01 3 12458421 12458421 C G PPARG Silent p.L346L 0.79 TCGA-XF-AAMG-01 3 126222869 126222869 C G UROC1 Missense_Mutation p.D291H 0.18 deleterious(0.03) possibly_damaging(0.742) TCGA-XF-AAMG-01 3 129275929 129275929 C T PLXND1 Silent p.S1861S 0.25 TCGA-XF-AAMG-01 3 129290038 129290038 C T PLXND1 Missense_Mutation p.E1149K 0.74 tolerated(0.2) benign(0.426) TCGA-XF-AAMG-01 3 130463769 130463769 T A PIK3R4 Silent p.A98A 0.13 TCGA-XF-AAMG-01 3 130743766 130743766 T C ASTE1 Missense_Mutation p.K129E 0.18 tolerated(0.28) possibly_damaging(0.676) TCGA-XF-AAMG-01 3 132218049 132218049 C G DNAJC13 Missense_Mutation p.F1412L 0.48 tolerated(0.08) benign(0.088) TCGA-XF-AAMG-01 3 132403607 132403607 C G NPHP3 Missense_Mutation p.E1121Q 0.30 deleterious(0.03) possibly_damaging(0.826) TCGA-XF-AAMG-01 3 133099947 133099947 G C TMEM108 Silent p.L464L 0.21 TCGA-XF-AAMG-01 3 135721796 135721796 A G PPP2R3A Missense_Mutation p.K486E 0.21 tolerated_low_confidence(0.63) benign(0.002) TCGA-XF-AAMG-01 3 135869877 135869877 G C MSL2 3'UTR 0.17 TCGA-XF-AAMG-01 3 1363508 1363508 C T CNTN6 Silent p.L312L 0.44 TCGA-XF-AAMG-01 3 140401809 140401809 G A TRIM42 Missense_Mutation p.E283K 0.65 tolerated(0.22) benign(0.02) TCGA-XF-AAMG-01 3 149290706 149290706 G A WWTR1 Silent p.A171A 0.25 TCGA-XF-AAMG-01 3 151599261 151599261 G C SUCNR1 Silent p.L310L 0.13 TCGA-XF-AAMG-01 3 154032967 154032967 G C DHX36 Missense_Mutation p.I157M 0.10 tolerated(0.13) benign(0.163) TCGA-XF-AAMG-01 3 155210581 155210581 C G PLCH1 Silent p.L736L 0.23 TCGA-XF-AAMG-01 3 156983405 156983405 C T VEPH1 Silent p.E725E 0.16 TCGA-XF-AAMG-01 3 16535315 16535315 G C RFTN1 Nonsense_Mutation p.S21* 0.14 TCGA-XF-AAMG-01 3 165548690 165548690 C T BCHE Missense_Mutation p.M44I 0.10 tolerated(0.94) benign(0.001) TCGA-XF-AAMG-01 3 169099103 169099103 G C MECOM Missense_Mutation p.R107G 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 3 17052159 17052159 C G PLCL2 Missense_Mutation p.H315D 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-XF-AAMG-01 3 171377037 171377037 C T PLD1 Missense_Mutation p.D799N 0.15 deleterious(0.02) benign(0.104) TCGA-XF-AAMG-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.82 deleterious(0.04) probably_damaging(0.96) TCGA-XF-AAMG-01 3 178936114 178936114 G C PIK3CA Missense_Mutation p.W552C 0.31 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 3 183888154 183888154 G T DVL3 Nonsense_Mutation p.E588* 0.20 TCGA-XF-AAMG-01 3 183906098 183906098 G A ABCF3 Missense_Mutation p.D247N 0.19 tolerated(0.11) possibly_damaging(0.483) TCGA-XF-AAMG-01 3 184046519 184046519 G A EIF4G1 Missense_Mutation p.G1359R 0.60 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMG-01 3 184070896 184070896 C - CLCN2 Frame_Shift_Del p.E690Rfs*6 0.20 TCGA-XF-AAMG-01 3 184566952 184566952 C G VPS8 Nonsense_Mutation p.S212* 0.11 TCGA-XF-AAMG-01 3 187416783 187416783 A C RTP2 Missense_Mutation p.C61G 0.27 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 3 195451703 195451703 G A MUC20 Missense_Mutation p.E77K 0.25 tolerated(0.11) benign(0.259) TCGA-XF-AAMG-01 3 19575479 19575479 C G KCNH8 Missense_Mutation p.S1071C 0.56 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-XF-AAMG-01 3 197598223 197598223 C G LRCH3 Missense_Mutation p.L674V 0.20 deleterious(0) possibly_damaging(0.728) TCGA-XF-AAMG-01 3 19956853 19956853 A C EFHB Missense_Mutation p.F410L 0.47 tolerated(0.68) benign(0.001) TCGA-XF-AAMG-01 3 21462689 21462689 T G ZNF385D 3'UTR 0.33 TCGA-XF-AAMG-01 3 37379221 37379221 A G GOLGA4 Missense_Mutation p.E2146G 0.10 probably_damaging(0.999) TCGA-XF-AAMG-01 3 38951691 38951691 A T SCN11A Missense_Mutation p.S323T 0.07 deleterious(0.02) benign(0.401) TCGA-XF-AAMG-01 3 39229230 39229230 T C XIRP1 Silent p.E569E 0.05 TCGA-XF-AAMG-01 3 39307043 39307043 C A CX3CR1 Missense_Mutation p.V352F 0.06 tolerated(0.69) possibly_damaging(0.61) TCGA-XF-AAMG-01 3 39307062 39307062 A G CX3CR1 Silent p.A345A 0.05 TCGA-XF-AAMG-01 3 45561759 45561759 C T LARS2 Nonsense_Mutation p.Q755* 0.06 TCGA-XF-AAMG-01 3 47455340 47455340 G A SCAP 3'UTR 0.77 TCGA-XF-AAMG-01 3 49064004 49064004 C T IMPDH2 Missense_Mutation p.M286I 0.63 deleterious(0.02) benign(0.12) TCGA-XF-AAMG-01 3 49692427 49692427 G C BSN Missense_Mutation p.R1813T 0.64 unknown(0) TCGA-XF-AAMG-01 3 49750139 49750139 G T RNF123 Intron 0.44 TCGA-XF-AAMG-01 3 49756481 49756481 G T AMIGO3 Missense_Mutation p.L140M 0.60 deleterious(0.03) probably_damaging(0.982) TCGA-XF-AAMG-01 3 49758047 49758047 C T RNF123 Silent p.L1202L 0.36 TCGA-XF-AAMG-01 3 50252977 50252977 C T SLC38A3 Intron 0.61 TCGA-XF-AAMG-01 3 50313213 50313213 C T LSMEM2 5'Flank 0.67 TCGA-XF-AAMG-01 3 52968878 52968878 C T SFMBT1 Missense_Mutation p.R135Q 0.19 tolerated(0.61) benign(0.001) TCGA-XF-AAMG-01 3 58382891 58382891 C T PXK Silent p.F316F 0.65 TCGA-XF-AAMG-01 3 58520681 58520681 C T ACOX2 Silent p.R51R 0.79 TCGA-XF-AAMG-01 3 62355856 62355856 T C FEZF2 Missense_Mutation p.R428G 0.36 deleterious(0) possibly_damaging(0.849) TCGA-XF-AAMG-01 3 71021828 71021828 C A FOXP1 Splice_Site p.X513_splice 0.50 TCGA-XF-AAMG-01 3 9771204 9771204 G A CPNE9 Missense_Mutation p.R497Q 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-XF-AAMG-01 3 97868513 97868513 C G OR5H14 Missense_Mutation p.S95C 0.25 tolerated(0.16) possibly_damaging(0.827) TCGA-XF-AAMG-01 3 98002114 98002114 A T OR5H2 Missense_Mutation p.Y128F 0.21 tolerated(0.05) benign(0.157) TCGA-XF-AAMG-01 3 98507004 98507004 C T ST3GAL6 Missense_Mutation p.L186F 0.15 tolerated(0.09) benign(0.327) TCGA-XF-AAMG-01 3 98600579 98600579 C T DCBLD2 Missense_Mutation p.E80K 0.16 deleterious(0.04) possibly_damaging(0.497) TCGA-XF-AAMG-01 3 9989117 9989117 C T PRRT3 Silent p.V580V 0.27 TCGA-XF-AAMG-01 4 110756605 110756605 C T RRH Silent p.I127I 0.86 TCGA-XF-AAMG-01 4 113351691 113351691 G C ALPK1 Missense_Mutation p.E330Q 0.20 deleterious(0) probably_damaging(0.963) TCGA-XF-AAMG-01 4 114177076 114177076 C T ANK2 Silent p.N392N 0.87 TCGA-XF-AAMG-01 4 1326625 1326625 C G MAEA Missense_Mutation p.P246R 0.23 deleterious(0.01) probably_damaging(0.968) TCGA-XF-AAMG-01 4 134071539 134071539 G A PCDH10 Missense_Mutation p.E82K 0.22 deleterious(0) probably_damaging(0.994) TCGA-XF-AAMG-01 4 134071784 134071784 C T PCDH10 Silent p.P163P 0.78 TCGA-XF-AAMG-01 4 146058671 146058671 G C OTUD4 Missense_Mutation p.Q1021E 0.14 deleterious(0.01) possibly_damaging(0.605) TCGA-XF-AAMG-01 4 146576334 146576334 C T MMAA Silent p.I335I 0.32 TCGA-XF-AAMG-01 4 148555513 148555513 G C TMEM184C Missense_Mutation p.K415N 0.18 tolerated(0.53) benign(0) TCGA-XF-AAMG-01 4 148604989 148604989 G A PRMT10 Silent p.L50L 0.69 TCGA-XF-AAMG-01 4 154197215 154197215 C A TRIM2 Missense_Mutation p.S129Y 0.39 deleterious(0.01) benign(0.009) TCGA-XF-AAMG-01 4 154214252 154214252 C T TRIM2 Missense_Mutation p.S191L 0.14 tolerated(0.22) benign(0.001) TCGA-XF-AAMG-01 4 15607298 15607298 G C FBXL5 3'UTR 0.67 TCGA-XF-AAMG-01 4 156751055 156751055 G C ASIC5 Missense_Mutation p.P491A 0.15 tolerated_low_confidence(0.17) benign(0.004) TCGA-XF-AAMG-01 4 156751110 156751110 G C ASIC5 Nonsense_Mutation p.Y472* 0.24 TCGA-XF-AAMG-01 4 160253787 160253787 G C RAPGEF2 Missense_Mutation p.R530S 0.25 deleterious(0.02) benign(0.185) TCGA-XF-AAMG-01 4 164394638 164394638 G C TKTL2 Silent p.L83L 0.82 TCGA-XF-AAMG-01 4 1742690 1742690 G A TACC3 Missense_Mutation p.E734K 0.38 deleterious(0.02) possibly_damaging(0.639) TCGA-XF-AAMG-01 4 17847458 17847458 C G NCAPG 3'Flank 0.27 TCGA-XF-AAMG-01 4 183676192 183676192 G T TENM3 Missense_Mutation p.D1558Y 0.64 deleterious(0.01) benign(0.189) TCGA-XF-AAMG-01 4 187538246 187538246 G A FAT1 Silent p.I2996I 0.38 TCGA-XF-AAMG-01 4 20541135 20541135 T A SLIT2 Missense_Mutation p.L635H 0.31 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 4 24836595 24836595 C G CCDC149 Silent p.L265L 0.34 TCGA-XF-AAMG-01 4 25417159 25417159 G C ANAPC4 Missense_Mutation p.R633T 0.23 tolerated(0.57) benign(0.001) TCGA-XF-AAMG-01 4 2930096 2930096 C T ADD1 Missense_Mutation p.P718L 0.57 tolerated_low_confidence(0.24) unknown(0) TCGA-XF-AAMG-01 4 39462453 39462453 C T LIAS Missense_Mutation p.S30F 0.47 deleterious(0.05) benign(0.002) TCGA-XF-AAMG-01 4 39462513 39462513 C A LIAS Missense_Mutation p.S50Y 0.50 deleterious(0) benign(0.238) TCGA-XF-AAMG-01 4 40133519 40133519 G A N4BP2 Silent p.V1542V 0.10 TCGA-XF-AAMG-01 4 46388149 46388149 C T GABRA2 Silent p.T43T 0.12 TCGA-XF-AAMG-01 4 466451 466451 G C ZNF721 5'UTR 0.43 TCGA-XF-AAMG-01 4 47560283 47560283 T A ATP10D Silent p.A809A 0.07 TCGA-XF-AAMG-01 4 48147473 48147473 T A TEC Missense_Mutation p.E402V 0.11 deleterious(0) possibly_damaging(0.837) TCGA-XF-AAMG-01 4 48536559 48536559 C G FRYL Intron 0.31 TCGA-XF-AAMG-01 4 52860844 52860844 C G LRRC66 Missense_Mutation p.D782H 0.11 tolerated(0.06) probably_damaging(0.994) TCGA-XF-AAMG-01 4 55602663 55602663 G A KIT Splice_Site p.X829_splice 0.09 TCGA-XF-AAMG-01 4 59410 59410 G T ZNF595 Missense_Mutation p.D31Y 0.03 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-AAMG-01 4 68456635 68456635 C A STAP1 Missense_Mutation p.S231R 0.19 tolerated(0.14) benign(0.046) TCGA-XF-AAMG-01 4 70156432 70156432 C T UGT2B28 Missense_Mutation p.H405Y 0.26 tolerated(0.08) benign(0.018) TCGA-XF-AAMG-01 4 71201498 71201498 G A CABS1 Missense_Mutation p.E248K 0.54 deleterious(0.01) benign(0.124) TCGA-XF-AAMG-01 4 71384529 71384529 G A AMTN Missense_Mutation p.G12E 0.50 deleterious_low_confidence(0.03) probably_damaging(0.973) TCGA-XF-AAMG-01 4 74736291 74736291 G A CXCL1 3'UTR 0.32 TCGA-XF-AAMG-01 4 76894488 76894488 G A SDAD1 Silent p.D231D 0.32 TCGA-XF-AAMG-01 4 77816638 77816638 C T SOWAHB Missense_Mutation p.E789K 0.49 deleterious(0) benign(0.292) TCGA-XF-AAMG-01 4 77816954 77816954 C T SOWAHB Silent p.Q683Q 0.48 TCGA-XF-AAMG-01 4 79430116 79430116 G A FRAS1 Missense_Mutation p.E3246K 0.36 probably_damaging(0.99) TCGA-XF-AAMG-01 4 80976547 80976547 C T ANTXR2 Silent p.L151L 0.50 TCGA-XF-AAMG-01 4 80976622 80976622 C T ANTXR2 Splice_Site p.X127_splice 0.44 TCGA-XF-AAMG-01 4 8416611 8416611 G C ACOX3 Silent p.L141L 0.17 TCGA-XF-AAMG-01 4 87809000 87809000 C T C4orf36 Silent p.L89L 0.53 TCGA-XF-AAMG-01 5 1089240 1089240 G A SLC12A7 Missense_Mutation p.P116S 0.50 deleterious(0.04) possibly_damaging(0.502) TCGA-XF-AAMG-01 5 110819898 110819898 G A CAMK4 Missense_Mutation p.A386T 0.40 tolerated(0.18) benign(0.003) TCGA-XF-AAMG-01 5 11411726 11411726 G T CTNND2 Missense_Mutation p.L121I 0.12 tolerated(0.31) benign(0.067) TCGA-XF-AAMG-01 5 118539081 118539081 C T DMXL1 Nonsense_Mutation p.Q2605* 0.28 TCGA-XF-AAMG-01 5 122881418 122881418 C T CSNK1G3 Nonsense_Mutation p.R21* 0.47 TCGA-XF-AAMG-01 5 126869356 126869356 G C PRRC1 Missense_Mutation p.E267Q 0.65 tolerated(0.07) possibly_damaging(0.901) TCGA-XF-AAMG-01 5 130522801 130522801 G C LYRM7 Silent p.L81L 0.38 TCGA-XF-AAMG-01 5 132553015 132553015 G A FSTL4 Missense_Mutation p.S505F 0.33 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 5 135416248 135416248 C T VTRNA2-1 RNA 0.13 TCGA-XF-AAMG-01 5 140023170 140023170 C T TMCO6 Silent p.L276L 0.41 TCGA-XF-AAMG-01 5 140230410 140230410 C G PCDHA9 Missense_Mutation p.S777C 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.497) TCGA-XF-AAMG-01 5 140250615 140250615 C T PCDHA11 Missense_Mutation p.R643C 0.32 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-XF-AAMG-01 5 140256728 140256728 C T PCDHA12 Silent p.D557D 0.34 TCGA-XF-AAMG-01 5 140558567 140558567 G T PCDHB8 Missense_Mutation p.V318F 0.19 deleterious_low_confidence(0.02) benign(0.01) TCGA-XF-AAMG-01 5 140589414 140589414 T - PCDHB12 Frame_Shift_Del p.I312Mfs*6 0.27 TCGA-XF-AAMG-01 5 140712279 140712279 C A PCDHGA1 Silent p.G676G 0.12 TCGA-XF-AAMG-01 5 145533521 145533521 G C LARS Missense_Mutation p.S363C 0.22 deleterious(0.02) benign(0.014) TCGA-XF-AAMG-01 5 149669141 149669141 G C CAMK2A Missense_Mutation p.F16L 0.22 tolerated_low_confidence(0.66) benign(0.007) TCGA-XF-AAMG-01 5 153085263 153085263 G A GRIA1 Missense_Mutation p.D497N 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 5 156484969 156484969 G C HAVCR1 5'UTR 0.62 TCGA-XF-AAMG-01 5 167489239 167489239 T G TENM2 Missense_Mutation p.I495R 0.25 deleterious(0) benign(0.239) TCGA-XF-AAMG-01 5 175956521 175956521 C G RNF44 Intron 0.28 TCGA-XF-AAMG-01 5 176002569 176002569 C G CDHR2 Missense_Mutation p.I277M 0.21 tolerated(0.22) possibly_damaging(0.583) TCGA-XF-AAMG-01 5 26881389 26881389 C A CDH9 Silent p.G742G 0.26 TCGA-XF-AAMG-01 5 26881390 26881390 C G CDH9 Missense_Mutation p.G742A 0.26 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 5 35876619 35876619 G A IL7R 3'UTR 0.69 TCGA-XF-AAMG-01 5 3599451 3599451 G A IRX1 Missense_Mutation p.R130Q 0.83 deleterious(0) possibly_damaging(0.885) TCGA-XF-AAMG-01 5 38403905 38403905 G A EGFLAM Intron 0.55 TCGA-XF-AAMG-01 5 40981496 40981496 G C C7 Missense_Mutation p.E785Q 0.38 tolerated(1) benign(0) TCGA-XF-AAMG-01 5 41065475 41065475 C A MROH2B Nonsense_Mutation p.E107* 0.14 TCGA-XF-AAMG-01 5 43175134 43175134 G A ZNF131 Missense_Mutation p.D557N 0.13 tolerated_low_confidence(0.09) benign(0.047) TCGA-XF-AAMG-01 5 43277380 43277380 G C NIM1K Missense_Mutation p.E172Q 0.10 tolerated(0.06) benign(0.378) TCGA-XF-AAMG-01 5 45396774 45396774 G A HCN1 Silent p.F350F 0.44 TCGA-XF-AAMG-01 5 479978 479978 C T SLC9A3 Silent p.L540L 0.10 TCGA-XF-AAMG-01 5 53751859 53751859 C A HSPB3 Missense_Mutation p.F80L 0.27 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 5 5462060 5462060 G C KIAA0947 Missense_Mutation p.Q871H 0.26 tolerated(0.06) benign(0.052) TCGA-XF-AAMG-01 5 56219182 56219182 C G MIER3 Missense_Mutation p.E475Q 0.27 tolerated(0.23) probably_damaging(0.999) TCGA-XF-AAMG-01 5 56219359 56219359 C G MIER3 Missense_Mutation p.D416H 0.29 tolerated(0.09) benign(0.072) TCGA-XF-AAMG-01 5 56219781 56219781 C G MIER3 Missense_Mutation p.R337T 0.24 deleterious(0) benign(0.353) TCGA-XF-AAMG-01 5 56558560 56558560 C A GPBP1 Nonsense_Mutation p.S475* 0.56 TCGA-XF-AAMG-01 5 56777788 56777788 G A ACTBL2 Silent p.I249I 0.21 TCGA-XF-AAMG-01 5 57753156 57753156 T C PLK2 Missense_Mutation p.E287G 0.22 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMG-01 5 60050459 60050459 C G ELOVL7 Missense_Mutation p.D280H 0.23 tolerated(0.06) benign(0.001) TCGA-XF-AAMG-01 5 64748714 64748714 C T ADAMTS6 Silent p.L221L 0.58 TCGA-XF-AAMG-01 5 67522459 67522459 C T PIK3R1 5'UTR 0.29 TCGA-XF-AAMG-01 5 74892752 74892752 C G POLK Missense_Mutation p.S745C 0.57 tolerated(0.2) benign(0.006) TCGA-XF-AAMG-01 5 75913509 75913509 G T F2RL2 Silent p.L341L 0.27 TCGA-XF-AAMG-01 5 76785289 76785289 C A WDR41 Missense_Mutation p.D54Y 0.51 deleterious(0) possibly_damaging(0.467) TCGA-XF-AAMG-01 5 7867306 7867306 G C FASTKD3 Missense_Mutation p.S297R 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-XF-AAMG-01 5 80548557 80548557 G C CKMT2 Missense_Mutation p.E66Q 0.32 deleterious(0.03) benign(0.051) TCGA-XF-AAMG-01 5 83259125 83259125 C G EDIL3 Missense_Mutation p.D398H 0.48 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 5 90674587 90674587 C T ARRDC3 Missense_Mutation p.D96N 0.59 tolerated(0.2) probably_damaging(0.911) TCGA-XF-AAMG-01 5 94764386 94764386 C G FAM81B Missense_Mutation p.Q246E 0.25 deleterious(0.03) possibly_damaging(0.881) TCGA-XF-AAMG-01 5 96244713 96244713 C G ERAP2 Silent p.L687L 0.18 TCGA-XF-AAMG-01 5 99871245 99871245 C A FAM174A Nonsense_Mutation p.S4* 0.58 TCGA-XF-AAMG-01 6 105609817 105609817 G C POPDC3 5'UTR 0.15 TCGA-XF-AAMG-01 6 110428345 110428345 C G WASF1 Missense_Mutation p.D159H 0.78 deleterious(0) unknown(0) TCGA-XF-AAMG-01 6 111694670 111694670 C G REV3L Missense_Mutation p.E1630Q 0.60 deleterious(0.01) probably_damaging(0.998) TCGA-XF-AAMG-01 6 116953542 116953542 C G RSPH4A Missense_Mutation p.L697V 0.22 tolerated(1) unknown(0) TCGA-XF-AAMG-01 6 127768126 127768126 G T KIAA0408 Missense_Mutation p.N446K 0.13 deleterious(0) probably_damaging(0.984) TCGA-XF-AAMG-01 6 131222249 131222249 G T EPB41L2 Missense_Mutation p.A334D 0.17 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMG-01 6 135606773 135606773 C G AHI1 3'UTR 0.43 TCGA-XF-AAMG-01 6 136599270 136599270 G A BCLAF1 Missense_Mutation p.T250I 0.07 tolerated_low_confidence(0.16) benign(0.261) TCGA-XF-AAMG-01 6 137018461 137018461 C G MAP3K5 Missense_Mutation p.E291Q 0.66 tolerated(0.35) possibly_damaging(0.843) TCGA-XF-AAMG-01 6 137245375 137245375 C T SLC35D3 Silent p.I264I 0.09 TCGA-XF-AAMG-01 6 139229830 139229830 G C REPS1 Missense_Mutation p.L730V 0.17 tolerated(0.15) possibly_damaging(0.828) TCGA-XF-AAMG-01 6 147636695 147636695 G C STXBP5 Missense_Mutation p.E483Q 0.23 deleterious(0.01) benign(0.129) TCGA-XF-AAMG-01 6 150001347 150001347 C G LATS1 Missense_Mutation p.E753Q 0.13 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 6 150569944 150569944 G C PPP1R14C Missense_Mutation p.K162N 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-XF-AAMG-01 6 151738478 151738478 C G RMND1 Missense_Mutation p.R379T 0.16 deleterious(0) probably_damaging(0.954) TCGA-XF-AAMG-01 6 160209130 160209130 C A TCP1 Missense_Mutation p.G37V 0.16 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 6 160232786 160232786 G A PNLDC1 Missense_Mutation p.D292N 0.10 deleterious(0.01) probably_damaging(0.982) TCGA-XF-AAMG-01 6 168352787 168352787 G A MLLT4 Missense_Mutation p.E1578K 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.475) TCGA-XF-AAMG-01 6 25966711 25966711 C T TRIM38 5'UTR 0.25 TCGA-XF-AAMG-01 6 26158564 26158564 C G HIST1H2BD Missense_Mutation p.S56C 0.15 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-XF-AAMG-01 6 26158719 26158719 G A HIST1H2BD Missense_Mutation p.A108T 0.07 deleterious_low_confidence(0.01) benign(0.07) TCGA-XF-AAMG-01 6 26370723 26370723 G T BTN3A2 Nonsense_Mutation p.E203* 0.07 TCGA-XF-AAMG-01 6 26509050 26509050 G A BTN1A1 Missense_Mutation p.R410Q 0.75 deleterious(0.03) probably_damaging(0.998) TCGA-XF-AAMG-01 6 27114356 27114356 G C HIST1H2BK Missense_Mutation p.I74M 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.545) TCGA-XF-AAMG-01 6 27879599 27879599 G A OR2B2 Missense_Mutation p.P167S 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-XF-AAMG-01 6 28228298 28228298 G C NKAPL Missense_Mutation p.K383N 0.16 tolerated(0.06) possibly_damaging(0.747) TCGA-XF-AAMG-01 6 28293844 28293844 G A ZSCAN31 3'UTR 0.75 TCGA-XF-AAMG-01 6 28543420 28543420 C T SCAND3 Silent p.Q354Q 0.19 TCGA-XF-AAMG-01 6 28971287 28971287 C G ZNF311 Intron 0.16 TCGA-XF-AAMG-01 6 30297275 30297275 G C TRIM39 Missense_Mutation p.E61Q 0.21 tolerated(0.46) possibly_damaging(0.735) TCGA-XF-AAMG-01 6 30457340 30457340 C T HLA-E Missense_Mutation p.S11L 0.19 tolerated_low_confidence(0.06) benign(0.32) TCGA-XF-AAMG-01 6 30569964 30569964 C G PPP1R10 Missense_Mutation p.G821A 0.12 tolerated_low_confidence(0.6) unknown(0) TCGA-XF-AAMG-01 6 31600590 31600590 G A PRRC2A Silent p.L1380L 0.26 TCGA-XF-AAMG-01 6 31624387 31624387 C T APOM Missense_Mutation p.R85C 0.06 deleterious(0.01) possibly_damaging(0.884) TCGA-XF-AAMG-01 6 31627616 31627616 C G C6orf47 Missense_Mutation p.E37Q 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XF-AAMG-01 6 31639982 31639982 C T CSNK2B-LY6G5B-1181 3'UTR 0.08 TCGA-XF-AAMG-01 6 31783512 31783512 C T HSPA1A 5'UTR 0.26 TCGA-XF-AAMG-01 6 31948245 31948245 G C STK19 Missense_Mutation p.G278A 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-XF-AAMG-01 6 32083534 32083534 G C ATF6B Silent p.L698L 0.24 TCGA-XF-AAMG-01 6 3225036 3225036 C T TUBB2B Silent p.T429T 0.21 TCGA-XF-AAMG-01 6 32818750 32818750 G T TAP1 Missense_Mutation p.L401M 0.33 deleterious(0.03) possibly_damaging(0.513) TCGA-XF-AAMG-01 6 35945046 35945046 A C SLC26A8 Missense_Mutation p.F370V 0.37 tolerated(0.66) benign(0.1) TCGA-XF-AAMG-01 6 36882384 36882384 G C C6orf89 Missense_Mutation p.E211Q 0.25 tolerated(0.05) possibly_damaging(0.854) TCGA-XF-AAMG-01 6 38142836 38142836 C T BTBD9 Silent p.L588L 0.32 TCGA-XF-AAMG-01 6 38825497 38825497 G C DNAH8 Missense_Mutation p.Q1762H 0.53 probably_damaging(0.999) TCGA-XF-AAMG-01 6 41905013 41905013 G C CCND3 Silent p.V178V 0.19 TCGA-XF-AAMG-01 6 42930899 42930899 G A GNMT Missense_Mutation p.D181N 0.12 deleterious(0) probably_damaging(0.909) TCGA-XF-AAMG-01 6 43012596 43012596 C T CUL7 Silent p.Q1106Q 0.33 TCGA-XF-AAMG-01 6 43038427 43038427 C G KLC4 Intron 0.42 TCGA-XF-AAMG-01 6 44218174 44218174 G A HSP90AB1 Silent p.K265K 0.18 TCGA-XF-AAMG-01 6 52268609 52268609 C A PAQR8 Missense_Mutation p.R200S 0.37 tolerated(0.61) benign(0.187) TCGA-XF-AAMG-01 6 55266634 55266634 A T GFRAL Missense_Mutation p.I390L 0.41 deleterious_low_confidence(0.05) benign(0.012) TCGA-XF-AAMG-01 6 71242943 71242943 G C FAM135A Missense_Mutation p.E1286Q 0.24 deleterious(0) probably_damaging(0.976) TCGA-XF-AAMG-01 6 72806799 72806799 C G RIMS1 Silent p.L131L 0.57 TCGA-XF-AAMG-01 6 78172400 78172400 T A HTR1B Nonsense_Mutation p.K241* 0.15 TCGA-XF-AAMG-01 6 89855873 89855873 G A PM20D2 Missense_Mutation p.G4R 0.17 deleterious_low_confidence(0.03) benign(0.036) TCGA-XF-AAMG-01 6 89855891 89855891 G T PM20D2 Nonsense_Mutation p.E10* 0.20 TCGA-XF-AAMG-01 6 99850568 99850568 C G PNISR Missense_Mutation p.G392A 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAMG-01 7 100033030 100033030 C T PPP1R35 Missense_Mutation p.E239K 0.48 deleterious(0.04) probably_damaging(0.991) TCGA-XF-AAMG-01 7 100390120 100390120 G A ZAN Silent p.Q2601Q 0.41 TCGA-XF-AAMG-01 7 103216084 103216084 C G RELN Missense_Mutation p.G1405A 0.39 deleterious(0.04) possibly_damaging(0.721) TCGA-XF-AAMG-01 7 104758397 104758397 G A SRPK2 Missense_Mutation p.P663L 0.21 deleterious(0) possibly_damaging(0.7) TCGA-XF-AAMG-01 7 105644998 105644998 G C CDHR3 Missense_Mutation p.R306T 0.15 deleterious(0.01) probably_damaging(0.975) TCGA-XF-AAMG-01 7 105645021 105645021 G T CDHR3 Nonsense_Mutation p.E314* 0.22 TCGA-XF-AAMG-01 7 107571826 107571826 G A LAMB1 Silent p.I1504I 0.18 TCGA-XF-AAMG-01 7 107836314 107836314 C T NRCAM Missense_Mutation p.E452K 0.28 tolerated(0.07) possibly_damaging(0.827) TCGA-XF-AAMG-01 7 116339307 116339307 C G MET Missense_Mutation p.L57V 0.49 tolerated(1) benign(0.023) TCGA-XF-AAMG-01 7 122342214 122342214 G A RNF148 Silent p.F197F 0.14 TCGA-XF-AAMG-01 7 123302610 123302610 G A LMOD2 Missense_Mutation p.E324K 0.21 deleterious(0.01) benign(0.11) TCGA-XF-AAMG-01 7 126086309 126086309 G C GRM8 Missense_Mutation p.Q850E 0.20 tolerated(0.5) benign(0.013) TCGA-XF-AAMG-01 7 129668804 129668804 G A ZC3HC1 Nonsense_Mutation p.Q187* 0.50 TCGA-XF-AAMG-01 7 131084002 131084002 C A MKLN1 Nonsense_Mutation p.Y171* 0.19 TCGA-XF-AAMG-01 7 134853654 134853654 C T C7orf49 Silent p.E7E 0.15 TCGA-XF-AAMG-01 7 135303259 135303259 G A NUP205 Missense_Mutation p.E1291K 0.47 deleterious(0) probably_damaging(0.992) TCGA-XF-AAMG-01 7 138200032 138200032 T A TRIM24 Missense_Mutation p.C187S 0.15 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 7 141708443 141708443 G T MGAM Nonsense_Mutation p.E89* 0.37 TCGA-XF-AAMG-01 7 142568009 142568009 C G EPHB6 Missense_Mutation p.P884A 0.25 tolerated(0.22) possibly_damaging(0.82) TCGA-XF-AAMG-01 7 142627249 142627249 T C TRPV5 Missense_Mutation p.I85V 0.41 tolerated(1) benign(0.014) TCGA-XF-AAMG-01 7 143085416 143085416 G C ZYX Missense_Mutation p.Q376H 0.32 deleterious(0.03) possibly_damaging(0.659) TCGA-XF-AAMG-01 7 143270160 143270160 C G CTAGE15 Missense_Mutation p.S417C 0.13 deleterious(0.04) benign(0.404) TCGA-XF-AAMG-01 7 143792827 143792827 G A OR2A12 Silent p.P209P 0.34 TCGA-XF-AAMG-01 7 150068781 150068781 G A REPIN1 Missense_Mutation p.E208K 0.31 tolerated(0.17) possibly_damaging(0.487) TCGA-XF-AAMG-01 7 1529000 1529000 G T INTS1 Silent p.L766L 0.33 TCGA-XF-AAMG-01 7 157369389 157369389 G A PTPRN2 Missense_Mutation p.T900M 0.27 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 7 16841314 16841314 G A AGR2 Missense_Mutation p.S36F 0.18 tolerated(0.06) benign(0.161) TCGA-XF-AAMG-01 7 21631027 21631027 C T DNAH11 Silent p.N833N 0.15 TCGA-XF-AAMG-01 7 21675621 21675621 C T DNAH11 Missense_Mutation p.H1550Y 0.78 benign(0.365) TCGA-XF-AAMG-01 7 21840809 21840809 G A DNAH11 Missense_Mutation p.E3368K 0.20 benign(0.072) TCGA-XF-AAMG-01 7 23191746 23191746 G C KLHL7 Missense_Mutation p.R285T 0.16 tolerated(0.2) benign(0.003) TCGA-XF-AAMG-01 7 23299747 23299747 C T GPNMB Silent p.Y230Y 0.13 TCGA-XF-AAMG-01 7 26236448 26236448 C T HNRNPA2B1 Missense_Mutation p.D164N 0.13 deleterious(0.02) unknown(0) TCGA-XF-AAMG-01 7 27182734 27182734 C T HOXA5 Missense_Mutation p.E165K 0.30 tolerated(0.71) benign(0.015) TCGA-XF-AAMG-01 7 2770955 2770955 C G GNA12 Missense_Mutation p.D336H 0.24 tolerated(0.12) benign(0.064) TCGA-XF-AAMG-01 7 27827055 27827055 G A TAX1BP1 Missense_Mutation p.E291K 0.06 deleterious(0.03) possibly_damaging(0.788) TCGA-XF-AAMG-01 7 28725767 28725767 C G CREB5 Intron 0.14 TCGA-XF-AAMG-01 7 30538452 30538452 G A GGCT Silent p.Y130Y 0.10 TCGA-XF-AAMG-01 7 30821705 30821705 C G FAM188B Nonsense_Mutation p.S99* 0.13 TCGA-XF-AAMG-01 7 38247217 38247217 G C STARD3NL Missense_Mutation p.E38Q 0.32 tolerated(0.3) possibly_damaging(0.484) TCGA-XF-AAMG-01 7 41729268 41729268 C T INHBA Missense_Mutation p.E421K 0.35 deleterious(0) probably_damaging(0.957) TCGA-XF-AAMG-01 7 43360290 43360290 C T HECW1 Missense_Mutation p.H137Y 0.56 deleterious(0) possibly_damaging(0.904) TCGA-XF-AAMG-01 7 43477814 43477814 A G HECW1 Intron 0.24 TCGA-XF-AAMG-01 7 44578808 44578808 G T NPC1L1 Missense_Mutation p.F396L 0.14 deleterious(0.03) possibly_damaging(0.715) TCGA-XF-AAMG-01 7 55912272 55912272 C T SEPT14 Silent p.L105L 0.09 TCGA-XF-AAMG-01 7 56007157 56007157 G T ZNF713 Missense_Mutation p.G251W 0.08 deleterious(0) probably_damaging(0.97) TCGA-XF-AAMG-01 7 56007158 56007158 G T ZNF713 Missense_Mutation p.G251V 0.11 deleterious(0) possibly_damaging(0.68) TCGA-XF-AAMG-01 7 57188186 57188186 G A ZNF479 Silent p.L312L 0.50 TCGA-XF-AAMG-01 7 64168143 64168143 G C ZNF107 Missense_Mutation p.K487N 0.19 deleterious(0.01) possibly_damaging(0.846) TCGA-XF-AAMG-01 7 6487435 6487435 G T DAGLB Silent p.I13I 0.37 TCGA-XF-AAMG-01 7 6864165 6864165 G C CCZ1B Nonsense_Mutation p.S78* 0.16 TCGA-XF-AAMG-01 7 72849819 72849819 G A FZD9 Silent p.R494R 0.35 TCGA-XF-AAMG-01 7 73245999 73245999 G A CLDN4 Silent p.Q156Q 0.35 TCGA-XF-AAMG-01 7 73275497 73275497 C T WBSCR28 5'UTR 0.38 TCGA-XF-AAMG-01 7 74016765 74016765 C T GTF2IRD1 3'UTR 0.49 TCGA-XF-AAMG-01 7 76828691 76828691 C G FGL2 Silent p.L140L 0.13 TCGA-XF-AAMG-01 7 803530 803530 G C HEATR2 Missense_Mutation p.E568Q 0.09 tolerated(0.12) benign(0.212) TCGA-XF-AAMG-01 7 81579773 81579773 A T CACNA2D1 Missense_Mutation p.Y1071N 0.17 tolerated(0.33) benign(0) TCGA-XF-AAMG-01 7 82583806 82583806 C A PCLO Nonsense_Mutation p.E2155* 0.23 TCGA-XF-AAMG-01 7 82585876 82585876 C G PCLO Missense_Mutation p.E1465Q 0.45 unknown(0) TCGA-XF-AAMG-01 7 86468864 86468864 G A GRM3 Silent p.Q678Q 0.18 TCGA-XF-AAMG-01 7 91570378 91570378 C G AKAP9 5'UTR 0.29 TCGA-XF-AAMG-01 7 91643604 91643604 C G AKAP9 Missense_Mutation p.Q1192E 0.17 benign(0.006) TCGA-XF-AAMG-01 7 91646413 91646413 C G AKAP9 Missense_Mutation p.S1278R 0.50 benign(0.413) TCGA-XF-AAMG-01 7 91659278 91659278 G C AKAP9 Silent p.V1406V 0.37 TCGA-XF-AAMG-01 7 92762797 92762797 C A SAMD9L Nonsense_Mutation p.E830* 0.37 TCGA-XF-AAMG-01 7 97833481 97833481 C T LMTK2 Missense_Mutation p.S1489L 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 7 98533269 98533269 C G TRRAP Nonsense_Mutation p.S1361* 0.11 TCGA-XF-AAMG-01 7 99032477 99032477 C T ATP5J2-PTCD1 Missense_Mutation p.R179Q 0.35 tolerated(0.23) benign(0.008) TCGA-XF-AAMG-01 7 99699366 99699366 C T AP4M1 Missense_Mutation p.S10F 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-XF-AAMG-01 7 99722395 99722395 G C CNPY4 Missense_Mutation p.E211Q 0.62 tolerated(0.4) benign(0) TCGA-XF-AAMG-01 7 99786107 99786107 G A STAG3 Missense_Mutation p.M155I 0.16 deleterious(0) benign(0.419) TCGA-XF-AAMG-01 7 99956465 99956465 C T PILRB Missense_Mutation p.R73W 0.17 tolerated(0.42) probably_damaging(0.998) TCGA-XF-AAMG-01 8 100829776 100829776 C A VPS13B Silent p.I2727I 0.09 TCGA-XF-AAMG-01 8 101154234 101154234 G C FBXO43 Missense_Mutation p.S83C 0.20 deleterious(0.02) possibly_damaging(0.784) TCGA-XF-AAMG-01 8 101629873 101629873 G C SNX31 Nonsense_Mutation p.S136* 0.45 TCGA-XF-AAMG-01 8 101932861 101932861 G A YWHAZ 3'UTR 0.05 TCGA-XF-AAMG-01 8 10465640 10465640 C G RP1L1 Missense_Mutation p.E1990Q 0.25 unknown(0) TCGA-XF-AAMG-01 8 105257242 105257242 G C RIMS2 Missense_Mutation p.E1145Q 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.557) TCGA-XF-AAMG-01 8 105509861 105509861 C T LRP12 Missense_Mutation p.D307N 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-AAMG-01 8 109215315 109215315 G A EIF3E Missense_Mutation p.S399L 0.24 deleterious(0) possibly_damaging(0.759) TCGA-XF-AAMG-01 8 109260902 109260902 G T EIF3E Silent p.I10I 0.55 TCGA-XF-AAMG-01 8 110588094 110588094 G C SYBU Missense_Mutation p.R345G 0.16 deleterious(0) probably_damaging(0.966) TCGA-XF-AAMG-01 8 110980331 110980331 C T KCNV1 Missense_Mutation p.D497N 0.12 tolerated(0.37) benign(0.011) TCGA-XF-AAMG-01 8 11180271 11180271 G C MTMR9 Missense_Mutation p.E542Q 0.47 tolerated(0.07) benign(0.019) TCGA-XF-AAMG-01 8 113304928 113304928 C A CSMD3 Missense_Mutation p.G2876C 0.12 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMG-01 8 113304929 113304929 A G CSMD3 Silent p.C2875C 0.12 TCGA-XF-AAMG-01 8 114389044 114389044 G A CSMD3 Intron 0.51 TCGA-XF-AAMG-01 8 11637118 11637118 G C NEIL2 Missense_Mutation p.K50N 0.22 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMG-01 8 117954919 117954919 T G AARD Missense_Mutation p.D149E 0.11 deleterious(0.02) possibly_damaging(0.866) TCGA-XF-AAMG-01 8 11994748 11994748 G C USP17L2 Missense_Mutation p.L508V 0.25 tolerated(0.67) benign(0.002) TCGA-XF-AAMG-01 8 120435264 120435264 G C NOV Missense_Mutation p.K322N 0.26 tolerated(0.08) possibly_damaging(0.876) TCGA-XF-AAMG-01 8 120940675 120940675 G C DEPTOR Missense_Mutation p.R53T 0.14 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 8 124140747 124140747 G C TBC1D31 Missense_Mutation p.R704T 0.29 deleterious(0) possibly_damaging(0.558) TCGA-XF-AAMG-01 8 124221774 124221774 G C FAM83A 3'UTR 0.25 TCGA-XF-AAMG-01 8 124553323 124553323 G A FBXO32 5'UTR 0.38 TCGA-XF-AAMG-01 8 125334371 125334371 G C TMEM65 Missense_Mutation p.L164V 0.63 deleterious(0.01) probably_damaging(0.992) TCGA-XF-AAMG-01 8 128748811 128748811 G A MYC 5'UTR 0.12 TCGA-XF-AAMG-01 8 132052131 132052131 C A ADCY8 Missense_Mutation p.R150L 0.09 deleterious(0.02) probably_damaging(0.972) TCGA-XF-AAMG-01 8 133141540 133141540 G T KCNQ3 Nonsense_Mutation p.S863* 0.53 TCGA-XF-AAMG-01 8 133995636 133995636 C A TG Missense_Mutation p.L2081M 0.15 deleterious(0.01) possibly_damaging(0.826) TCGA-XF-AAMG-01 8 141549416 141549416 C G AGO2 Intron 0.10 TCGA-XF-AAMG-01 8 141549464 141549464 C T AGO2 Silent p.Q708Q 0.12 TCGA-XF-AAMG-01 8 143928067 143928067 G C GML Silent p.L146L 0.24 TCGA-XF-AAMG-01 8 144620245 144620245 G C ZC3H3 Missense_Mutation p.S431C 0.20 deleterious(0.02) benign(0.428) TCGA-XF-AAMG-01 8 144732820 144732820 G C ZNF623 Missense_Mutation p.E260Q 0.14 deleterious(0) probably_damaging(0.966) TCGA-XF-AAMG-01 8 144920870 144920870 C G NRBP2 Silent p.L274L 0.25 TCGA-XF-AAMG-01 8 145998708 145998708 G C ZNF34 Missense_Mutation p.H542Q 0.28 tolerated(1) benign(0.306) TCGA-XF-AAMG-01 8 16942783 16942783 G C MICU3 Missense_Mutation p.D245H 0.21 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 8 22548312 22548312 C T EGR3 Missense_Mutation p.E280K 0.49 deleterious(0) benign(0.368) TCGA-XF-AAMG-01 8 22926468 22926468 C G TNFRSF10B 5'UTR 0.25 TCGA-XF-AAMG-01 8 27964264 27964264 G A ELP3 Missense_Mutation p.R98K 0.20 tolerated(0.21) possibly_damaging(0.515) TCGA-XF-AAMG-01 8 30472202 30472202 G C GTF2E2 Missense_Mutation p.L97V 0.27 deleterious(0) probably_damaging(0.919) TCGA-XF-AAMG-01 8 38810177 38810177 C G PLEKHA2 Missense_Mutation p.F219L 0.29 deleterious(0) possibly_damaging(0.669) TCGA-XF-AAMG-01 8 41164272 41164272 G A SFRP1 Intron 0.36 TCGA-XF-AAMG-01 8 42036454 42036454 C A PLAT Silent p.R497R 0.11 TCGA-XF-AAMG-01 8 48739311 48739311 G C PRKDC Missense_Mutation p.L2896V 0.28 probably_damaging(0.976) TCGA-XF-AAMG-01 8 51705403 51705403 T A SNTG1 3'UTR 0.19 TCGA-XF-AAMG-01 8 51705404 51705404 C A SNTG1 3'UTR 0.19 TCGA-XF-AAMG-01 8 52732932 52732932 C G PCMTD1 Missense_Mutation p.L351F 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-AAMG-01 8 53568746 53568746 C G RB1CC1 Missense_Mutation p.D1215H 0.31 deleterious(0) possibly_damaging(0.868) TCGA-XF-AAMG-01 8 56737380 56737380 G A TGS1 3'UTR 0.38 TCGA-XF-AAMG-01 8 57224763 57224763 C T SDR16C5 Missense_Mutation p.E140K 0.28 tolerated(0.46) possibly_damaging(0.574) TCGA-XF-AAMG-01 8 59059539 59059539 C T FAM110B Silent p.V250V 0.25 TCGA-XF-AAMG-01 8 6357358 6357358 T C ANGPT2 3'UTR 0.44 TCGA-XF-AAMG-01 8 73848748 73848748 C A KCNB2 Missense_Mutation p.D386E 0.09 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 8 77767244 77767244 C G ZFHX4 Missense_Mutation p.S2696C 0.16 probably_damaging(0.994) TCGA-XF-AAMG-01 8 85441595 85441595 G C RALYL Missense_Mutation p.K26N 0.50 deleterious(0) possibly_damaging(0.843) TCGA-XF-AAMG-01 8 87076677 87076677 G T PSKH2 Silent p.L123L 0.15 TCGA-XF-AAMG-01 8 90965821 90965821 G A NBN Missense_Mutation p.S499L 0.12 tolerated(0.17) benign(0.005) TCGA-XF-AAMG-01 8 93017410 93017410 G A RUNX1T1 Missense_Mutation p.S236L 0.12 deleterious(0.02) possibly_damaging(0.803) TCGA-XF-AAMG-01 8 97342466 97342466 A G PTDSS1 Missense_Mutation p.Y400C 0.30 deleterious(0.02) possibly_damaging(0.576) TCGA-XF-AAMG-01 9 100962603 100962603 C G TBC1D2 Missense_Mutation p.L826F 0.18 deleterious(0) probably_damaging(0.924) TCGA-XF-AAMG-01 9 103055314 103055314 C T INVS Silent p.R925R 0.11 TCGA-XF-AAMG-01 9 107298072 107298072 C G OR13C3 Silent p.L341L 0.33 TCGA-XF-AAMG-01 9 111625087 111625087 C T ACTL7A Missense_Mutation p.P162L 0.60 deleterious(0.02) probably_damaging(0.947) TCGA-XF-AAMG-01 9 116085364 116085364 C G WDR31 Missense_Mutation p.L132F 0.30 tolerated(0.15) benign(0.048) TCGA-XF-AAMG-01 9 123230170 123230170 G C CDK5RAP2 Missense_Mutation p.P692A 0.82 tolerated(0.75) possibly_damaging(0.539) TCGA-XF-AAMG-01 9 123805437 123805437 G C C5 Missense_Mutation p.P89R 0.15 deleterious(0) probably_damaging(0.935) TCGA-XF-AAMG-01 9 126794835 126794835 C T LHX2 Missense_Mutation p.S357L 0.77 tolerated(0.09) probably_damaging(0.978) TCGA-XF-AAMG-01 9 127915940 127915940 G A PPP6C Missense_Mutation p.R218W 0.14 deleterious(0) possibly_damaging(0.812) TCGA-XF-AAMG-01 9 130075783 130075783 C T GARNL3 Missense_Mutation p.S128F 0.36 deleterious(0) possibly_damaging(0.779) TCGA-XF-AAMG-01 9 131071790 131071790 C G TRUB2 3'UTR 0.80 TCGA-XF-AAMG-01 9 131342000 131342000 G C SPTAN1 Missense_Mutation p.D436H 0.79 deleterious(0.01) possibly_damaging(0.831) TCGA-XF-AAMG-01 9 131731694 131731694 C T NUP188 Silent p.L271L 0.79 TCGA-XF-AAMG-01 9 132400070 132400070 C G ASB6 Nonstop_Mutation p.*422Sext*1 0.49 TCGA-XF-AAMG-01 9 139391196 139391196 G A NOTCH1 Missense_Mutation p.P2332L 0.35 deleterious(0.03) benign(0.005) TCGA-XF-AAMG-01 9 139391744 139391744 G C NOTCH1 Silent p.L2149L 0.47 TCGA-XF-AAMG-01 9 139393596 139393596 G C NOTCH1 Nonsense_Mutation p.S2017* 0.39 TCGA-XF-AAMG-01 9 139395122 139395122 G C NOTCH1 Nonsense_Mutation p.S1939* 0.31 TCGA-XF-AAMG-01 9 140033937 140033937 C T GRIN1 5'UTR 0.33 TCGA-XF-AAMG-01 9 140137746 140137746 G A TUBB4B Missense_Mutation p.R359Q 0.23 tolerated_low_confidence(0.08) benign(0.021) TCGA-XF-AAMG-01 9 14859251 14859251 C A FREM1 Missense_Mutation p.Q187H 0.20 deleterious(0) benign(0.378) TCGA-XF-AAMG-01 9 26842412 26842412 G C CAAP1 Missense_Mutation p.P325A 0.47 tolerated(0.15) probably_damaging(0.997) TCGA-XF-AAMG-01 9 33395079 33395079 C T AQP7 Missense_Mutation p.M47I 0.06 deleterious(0.02) benign(0.1) TCGA-XF-AAMG-01 9 428430 428430 G A DOCK8 Silent p.L1469L 0.76 TCGA-XF-AAMG-01 9 43627681 43627681 C A SPATA31A6 Missense_Mutation p.A336S 0.34 tolerated(0.14) benign(0.046) TCGA-XF-AAMG-01 9 439365 439365 C T DOCK8 Nonsense_Mutation p.Q1734* 0.94 TCGA-XF-AAMG-01 9 5763812 5763812 G A KIAA1432 Missense_Mutation p.E929K 0.28 tolerated(0.1) possibly_damaging(0.722) TCGA-XF-AAMG-01 9 77245226 77245226 T G RORB Missense_Mutation p.I12M 0.16 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMG-01 9 77415294 77415294 G T TRPM6 Nonsense_Mutation p.S705* 0.18 TCGA-XF-AAMG-01 9 78796354 78796354 G A PCSK5 Missense_Mutation p.D682N 0.90 deleterious(0.04) possibly_damaging(0.84) TCGA-XF-AAMG-01 9 79321171 79321171 C A PRUNE2 Nonsense_Mutation p.E2007* 0.13 TCGA-XF-AAMG-01 9 79323132 79323132 G T PRUNE2 Nonsense_Mutation p.S1353* 0.14 TCGA-XF-AAMG-01 9 84532106 84532106 C T SPATA31D5P RNA 0.19 TCGA-XF-AAMG-01 9 88924932 88924932 C A ZCCHC6 Missense_Mutation p.A1127S 0.60 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 9 91931417 91931417 G A CKS2 3'UTR 0.81 TCGA-XF-AAMG-01 9 94538029 94538029 G C ROR2 Missense_Mutation p.L57V 0.61 tolerated_low_confidence(0.51) benign(0.001) TCGA-XF-AAMG-01 9 95947796 95947796 C G WNK2 Silent p.L195L 0.85 TCGA-XF-AAMG-01 9 968012 968012 C G DMRT1 Missense_Mutation p.S332C 0.83 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 X 100105237 100105237 G C NOX1 Missense_Mutation p.P346A 0.44 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 X 100490871 100490871 C T DRP2 Missense_Mutation p.P47L 0.84 deleterious_low_confidence(0.01) benign(0.004) TCGA-XF-AAMG-01 X 10201666 10201666 C G CLCN4 3'UTR 0.19 TCGA-XF-AAMG-01 X 117043383 117043383 G T KLHL13 Missense_Mutation p.P419H 0.62 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMG-01 X 119059226 119059226 C T NKAP Missense_Mutation p.R402Q 0.25 deleterious(0) unknown(0) TCGA-XF-AAMG-01 X 13056577 13056577 C G FAM9C Missense_Mutation p.G162R 0.30 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-XF-AAMG-01 X 132161945 132161945 G A USP26 Missense_Mutation p.H102Y 0.55 deleterious(0.01) benign(0.169) TCGA-XF-AAMG-01 X 134680624 134680624 C T DDX26B Intron 0.30 TCGA-XF-AAMG-01 X 135290110 135290110 A T FHL1 Missense_Mutation p.K164M 0.43 tolerated(0.06) probably_damaging(1) TCGA-XF-AAMG-01 X 135741329 135741329 C T CD40LG Missense_Mutation p.R181W 0.89 deleterious(0) possibly_damaging(0.855) TCGA-XF-AAMG-01 X 13764500 13764500 G C OFD1 Missense_Mutation p.E194Q 0.30 deleterious(0.05) probably_damaging(0.983) TCGA-XF-AAMG-01 X 150842433 150842433 G T PASD1 Silent p.V650V 0.93 TCGA-XF-AAMG-01 X 150842566 150842566 G C PASD1 Missense_Mutation p.E695Q 0.89 tolerated(1) benign(0.006) TCGA-XF-AAMG-01 X 151870288 151870288 G A MAGEA6 3'UTR 0.78 TCGA-XF-AAMG-01 X 153715847 153715847 C T SLC10A3 Silent p.%3D 0.80 TCGA-XF-AAMG-01 X 153741215 153741215 C A FAM3A Missense_Mutation p.W20L 0.82 tolerated(0.06) probably_damaging(0.999) TCGA-XF-AAMG-01 X 154159890 154159890 C A F8 Silent p.L725L 0.82 TCGA-XF-AAMG-01 X 154490013 154490013 T A RAB39B 3'UTR 0.44 TCGA-XF-AAMG-01 X 155171706 155171706 G A VAMP7 Nonsense_Mutation p.W229* 0.78 TCGA-XF-AAMG-01 X 15768238 15768238 C T CA5B Missense_Mutation p.A31V 0.31 tolerated_low_confidence(0.44) benign(0.001) TCGA-XF-AAMG-01 X 1761932 1761932 C G ASMT 3'UTR 0.31 TCGA-XF-AAMG-01 X 17745891 17745891 C G NHS Missense_Mutation p.T1201S 0.23 tolerated_low_confidence(0.93) benign(0.008) TCGA-XF-AAMG-01 X 19449624 19449624 C T MAP3K15 Silent p.R366R 0.87 TCGA-XF-AAMG-01 X 19449707 19449707 G C MAP3K15 Missense_Mutation p.R339G 0.80 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMG-01 X 22012569 22012569 C T SMS 3'UTR 1.00 TCGA-XF-AAMG-01 X 28807509 28807509 C G IL1RAPL1 Missense_Mutation p.Q17E 0.92 tolerated(1) benign(0.002) TCGA-XF-AAMG-01 X 3240668 3240668 C T MXRA5 Missense_Mutation p.D1020N 0.26 tolerated(0.19) benign(0.014) TCGA-XF-AAMG-01 X 37027999 37027999 C G FAM47C Missense_Mutation p.R506G 0.31 tolerated_low_confidence(0.22) probably_damaging(0.989) TCGA-XF-AAMG-01 X 40522377 40522377 G A MED14 Missense_Mutation p.R1162C 0.89 deleterious(0) probably_damaging(1) TCGA-XF-AAMG-01 X 41782262 41782262 C A CASK 5'UTR 0.24 TCGA-XF-AAMG-01 X 44120512 44120512 G T EFHC2 Missense_Mutation p.P139T 0.19 deleterious(0) probably_damaging(0.989) TCGA-XF-AAMG-01 X 44833957 44833957 G A KDM6A Nonsense_Mutation p.W127* 0.23 TCGA-XF-AAMG-01 X 47424488 47424488 T C ARAF Silent p.C136C 0.19 TCGA-XF-AAMG-01 X 47919398 47919398 C A ZNF630 Nonsense_Mutation p.E145* 0.28 TCGA-XF-AAMG-01 X 50055611 50055611 C A CCNB3 Missense_Mutation p.F1134L 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMG-01 X 50339780 50339780 C T SHROOM4 Missense_Mutation p.R1466Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMG-01 X 53409502 53409502 G A SMC1A Silent p.F1070F 0.44 TCGA-XF-AAMG-01 X 54019226 54019226 G A PHF8 Missense_Mutation p.P594L 0.20 tolerated(0.07) benign(0.045) TCGA-XF-AAMG-01 X 54114378 54114378 C T FAM120C Missense_Mutation p.R816Q 0.88 deleterious(0) possibly_damaging(0.873) TCGA-XF-AAMG-01 X 54482987 54482987 C T FGD1 Silent p.L550L 0.20 TCGA-XF-AAMG-01 X 55033586 55033586 G A APEX2 Silent p.K425K 0.95 TCGA-XF-AAMG-01 X 68381781 68381781 C G PJA1 Missense_Mutation p.G434A 0.44 tolerated(0.6) benign(0.004) TCGA-XF-AAMG-01 X 70679432 70679432 G C TAF1 Missense_Mutation p.D1719H 0.15 deleterious_low_confidence(0.01) benign(0.003) TCGA-XF-AAMH-01 10 120353838 120353838 C T PRLHR Missense_Mutation p.A307T 0.35 deleterious(0.02) possibly_damaging(0.905) TCGA-XF-AAMH-01 10 128193466 128193466 C A C10orf90 Silent p.A101A 0.47 TCGA-XF-AAMH-01 10 1405908 1405908 A G ADARB2 Missense_Mutation p.V131A 0.38 tolerated(0.21) probably_damaging(0.997) TCGA-XF-AAMH-01 10 75185672 75185672 T A MSS51 Silent p.T322T 0.32 TCGA-XF-AAMH-01 10 87489308 87489308 G A GRID1 Missense_Mutation p.R433C 0.33 deleterious(0.04) benign(0.326) TCGA-XF-AAMH-01 10 95353761 95353761 G A RBP4 Silent p.Y129Y 0.25 TCGA-XF-AAMH-01 11 105924764 105924764 C T KBTBD3 Missense_Mutation p.V218I 0.25 deleterious(0.01) benign(0.075) TCGA-XF-AAMH-01 11 124955360 124955360 G A SLC37A2 Missense_Mutation p.G440S 0.22 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMH-01 11 17741269 17741269 C T MYOD1 5'UTR 0.29 TCGA-XF-AAMH-01 11 47436197 47436197 G T SLC39A13 Intron 0.65 TCGA-XF-AAMH-01 11 5363992 5363992 C A OR51B5 Nonsense_Mutation p.G255* 0.34 TCGA-XF-AAMH-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.45 deleterious(0) benign(0.361) TCGA-XF-AAMH-01 12 32975425 32975425 G A PKP2 Silent p.G649G 0.06 TCGA-XF-AAMH-01 12 550091 550091 G T CCDC77 Missense_Mutation p.V417L 0.38 deleterious(0) possibly_damaging(0.618) TCGA-XF-AAMH-01 12 6457364 6457364 G A SCNN1A Missense_Mutation p.S621L 0.39 deleterious(0) probably_damaging(0.969) TCGA-XF-AAMH-01 12 8086455 8086455 C T SLC2A3 Missense_Mutation p.G20D 0.07 deleterious(0) probably_damaging(0.989) TCGA-XF-AAMH-01 12 91502714 91502714 C T LUM Missense_Mutation p.G15S 0.33 tolerated(0.47) benign(0.007) TCGA-XF-AAMH-01 13 73649903 73649903 A G KLF5 Missense_Mutation p.D418G 0.37 deleterious(0) probably_damaging(0.971) TCGA-XF-AAMH-01 14 20388887 20388887 G A OR4K5 Missense_Mutation p.G41E 0.21 deleterious(0) probably_damaging(1) TCGA-XF-AAMH-01 14 52781415 52781415 G A PTGER2 Nonsense_Mutation p.W50* 0.33 TCGA-XF-AAMH-01 14 68222855 68222855 G A ZFYVE26 Missense_Mutation p.P2199L 0.39 deleterious(0) possibly_damaging(0.882) TCGA-XF-AAMH-01 14 94708167 94708167 A G PPP4R4 Missense_Mutation p.Y340C 0.37 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMH-01 16 84103573 84103573 G A MBTPS1 Missense_Mutation p.P618L 0.92 deleterious(0.03) benign(0.116) TCGA-XF-AAMH-01 17 41598929 41598929 G A DHX8 Missense_Mutation p.D1087N 0.23 deleterious(0.04) probably_damaging(0.958) TCGA-XF-AAMH-01 17 66535530 66535530 G A FAM20A Nonsense_Mutation p.R437* 0.15 TCGA-XF-AAMH-01 17 67008197 67008197 G A ABCA9 Nonsense_Mutation p.R1023* 0.20 TCGA-XF-AAMH-01 17 78328062 78328062 G A RNF213 Intron 0.50 TCGA-XF-AAMH-01 17 79663729 79663729 G - HGS Frame_Shift_Del p.V554Sfs*56 0.22 TCGA-XF-AAMH-01 18 12351323 12351323 C A AFG3L2 Missense_Mutation p.D470Y 0.37 deleterious(0) probably_damaging(0.992) TCGA-XF-AAMH-01 18 47365610 47365610 C A MYO5B Missense_Mutation p.D1586Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMH-01 19 15338452 15338452 C T EPHX3 Silent p.Q293Q 0.37 TCGA-XF-AAMH-01 19 40580440 40580440 C T ZNF780A Missense_Mutation p.G638S 0.39 tolerated(0.06) probably_damaging(0.961) TCGA-XF-AAMH-01 19 49142241 49142241 G A CA11 Missense_Mutation p.R289W 0.56 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMH-01 1 147230326 147230326 T C GJA5 Missense_Mutation p.K341E 0.53 tolerated(0.12) unknown(0) TCGA-XF-AAMH-01 1 156615882 156615882 G T BCAN Silent p.L12L 0.20 TCGA-XF-AAMH-01 1 16464417 16464417 G - EPHA2 Frame_Shift_Del p.R415Afs*8 0.30 TCGA-XF-AAMH-01 1 200818513 200818519 AAATGAA - CAMSAP2 Frame_Shift_Del p.N873Efs*4 0.31 TCGA-XF-AAMH-01 1 55562761 55562761 G A USP24 Nonsense_Mutation p.R1934* 0.35 TCGA-XF-AAMH-01 1 67895855 67895855 C T SERBP1 Silent p.G43G 0.06 TCGA-XF-AAMH-01 1 75009717 75009717 C T TNNI3K 3'UTR 0.50 TCGA-XF-AAMH-01 20 1552529 1552529 G A SIRPB1 Silent p.N196N 0.40 TCGA-XF-AAMH-01 20 16492112 16492112 G A KIF16B Silent p.T169T 0.46 TCGA-XF-AAMH-01 20 1918064 1918064 C A SIRPA Missense_Mutation p.S455R 0.40 deleterious(0.03) probably_damaging(0.944) TCGA-XF-AAMH-01 20 33872044 33872044 G T EIF6 Missense_Mutation p.S43Y 0.42 deleterious(0.03) benign(0.199) TCGA-XF-AAMH-01 20 43850875 43850875 T C SEMG2 Missense_Mutation p.L201P 0.50 tolerated(0.37) probably_damaging(0.999) TCGA-XF-AAMH-01 22 23438530 23438530 C T GNAZ Silent p.F216F 0.42 TCGA-XF-AAMH-01 2 172725255 172725255 C G SLC25A12 Missense_Mutation p.D49H 0.39 tolerated(0.08) benign(0.322) TCGA-XF-AAMH-01 2 228398355 228398355 C - AGFG1 Frame_Shift_Del p.Q327Rfs*31 0.27 TCGA-XF-AAMH-01 2 240946758 240946758 G T NDUFA10 Missense_Mutation p.A260E 0.26 tolerated(0.76) benign(0.128) TCGA-XF-AAMH-01 2 70315530 70315530 C G PCBP1 Missense_Mutation p.L219V 0.39 tolerated(0.08) benign(0.15) TCGA-XF-AAMH-01 2 71780310 71780310 T C DYSF Missense_Mutation p.V659A 0.42 deleterious(0.01) possibly_damaging(0.64) TCGA-XF-AAMH-01 2 74717852 74717852 C T TTC31 Nonsense_Mutation p.R178* 0.31 TCGA-XF-AAMH-01 2 99995514 99995514 C T EIF5B Silent p.N625N 0.27 TCGA-XF-AAMH-01 3 111794202 111794202 C T TMPRSS7 Silent p.I480I 0.04 TCGA-XF-AAMH-01 3 119534285 119534285 A G NR1I2 Silent p.P390P 0.42 TCGA-XF-AAMH-01 3 157823797 157823797 G T SHOX2 Missense_Mutation p.A6E 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-AAMH-01 3 38103714 38103714 T A DLEC1 Missense_Mutation p.V243D 0.51 tolerated(0.1) benign(0.091) TCGA-XF-AAMH-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.38 deleterious(0) probably_damaging(0.954) TCGA-XF-AAMH-01 3 41877360 41877360 G A ULK4 Missense_Mutation p.T587I 0.45 deleterious(0.01) benign(0.013) TCGA-XF-AAMH-01 4 158257894 158257894 G T GRIA2 Silent p.S613S 0.41 TCGA-XF-AAMH-01 4 46390820 46390820 T A GABRA2 Intron 0.45 TCGA-XF-AAMH-01 5 118968583 118968583 G A FAM170A Missense_Mutation p.G71R 0.40 tolerated(0.1) possibly_damaging(0.589) TCGA-XF-AAMH-01 5 153026544 153026544 A C GRIA1 Missense_Mutation p.T103P 0.47 deleterious(0.02) probably_damaging(0.934) TCGA-XF-AAMH-01 5 157286050 157286050 G A CLINT1 5'UTR 0.44 TCGA-XF-AAMH-01 5 66440990 66440990 C T MAST4 Silent p.S959S 0.27 TCGA-XF-AAMH-01 5 77298758 77298758 G A AP3B1 Missense_Mutation p.R1085W 0.43 deleterious(0) possibly_damaging(0.689) TCGA-XF-AAMH-01 5 80404869 80404869 T C RASGRF2 Missense_Mutation p.S604P 0.31 deleterious(0) probably_damaging(0.939) TCGA-XF-AAMH-01 6 124979592 124979592 G C NKAIN2 Intron 0.52 TCGA-XF-AAMH-01 7 148963916 148963916 G A ZNF783 Missense_Mutation p.V143M 0.38 tolerated(0.09) possibly_damaging(0.839) TCGA-XF-AAMH-01 7 150698398 150698398 G - NOS3 Frame_Shift_Del p.G440Afs*64 0.30 TCGA-XF-AAMH-01 7 15470660 15470660 T C AGMO Silent p.R161R 0.48 TCGA-XF-AAMH-01 7 50468301 50468301 G A IKZF1 Silent p.G470G 0.64 TCGA-XF-AAMH-01 7 7612385 7612385 T C MIOS Silent p.G93G 0.42 TCGA-XF-AAMH-01 8 23082527 23082527 C T TNFRSF10A Silent p.V16V 0.93 TCGA-XF-AAMH-01 9 103111575 103111575 T C TEX10 Missense_Mutation p.K24R 0.08 tolerated(0.54) benign(0.002) TCGA-XF-AAMH-01 9 109691914 109691914 G A ZNF462 Silent p.L1907L 0.45 TCGA-XF-AAMH-01 9 112182795 112182795 C A PTPN3 Nonsense_Mutation p.E408* 0.58 TCGA-XF-AAMH-01 9 112182796 112182796 C A PTPN3 Silent p.T407T 0.58 TCGA-XF-AAMH-01 9 137309085 137309085 C T RXRA Missense_Mutation p.P231L 0.28 deleterious(0) probably_damaging(1) TCGA-XF-AAMH-01 9 139371086 139371086 G A SEC16A Missense_Mutation p.R328W 0.48 tolerated(0.13) benign(0.037) TCGA-XF-AAMH-01 9 21384772 21384772 C T IFNA2 Missense_Mutation p.S186N 0.43 tolerated(0.42) benign(0.197) TCGA-XF-AAMH-01 9 6007677 6007677 C T KIAA2026 Silent p.Q37Q 0.33 TCGA-XF-AAMH-01 9 738496 738497 - AGATG KANK1 Frame_Shift_Ins p.A1184Efs*45 0.21 TCGA-XF-AAMH-01 X 12939151 12939151 G A TLR8 Silent p.A664A 0.94 TCGA-XF-AAMH-01 X 152612855 152612855 G A ZNF275 Missense_Mutation p.A238T 0.90 tolerated(0.43) possibly_damaging(0.477) TCGA-XF-AAMJ-01 10 5255048 5255048 C T AKR1C4 Missense_Mutation p.R258C 0.11 tolerated(0.06) possibly_damaging(0.495) TCGA-XF-AAMJ-01 11 111784414 111784414 G A HSPB2 Missense_Mutation p.R115Q 0.09 deleterious(0) probably_damaging(1) TCGA-XF-AAMJ-01 11 59189982 59189982 C T OR5A2 Missense_Mutation p.A149T 0.11 deleterious(0.05) probably_damaging(0.918) TCGA-XF-AAMJ-01 11 59245414 59245414 C A OR4D10 Missense_Mutation p.P171H 0.16 deleterious(0) probably_damaging(0.987) TCGA-XF-AAMJ-01 11 64000266 64000269 AAAC - DNAJC4 Frame_Shift_Del p.Q155Cfs*23 0.19 TCGA-XF-AAMJ-01 12 120954398 120954398 C T COQ5 Silent p.Q182Q 0.07 TCGA-XF-AAMJ-01 12 120954536 120954536 C T COQ5 Silent p.Q136Q 0.08 TCGA-XF-AAMJ-01 12 3678685 3678685 G A PRMT8 Missense_Mutation p.V223M 0.09 tolerated(0.18) benign(0.159) TCGA-XF-AAMJ-01 12 49446697 49446697 C G KMT2D Splice_Site p.X371_splice 0.27 TCGA-XF-AAMJ-01 12 67700355 67700355 G A CAND1 Silent p.R969R 0.07 TCGA-XF-AAMJ-01 13 102368020 102368020 G C ITGBL1 3'UTR 0.10 TCGA-XF-AAMJ-01 14 105169748 105169748 C T INF2 Silent p.P208P 0.13 TCGA-XF-AAMJ-01 14 21873401 21873401 G A CHD8 Missense_Mutation p.R1092C 0.13 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMJ-01 15 42740283 42740283 C T ZNF106 Missense_Mutation p.R1018Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMJ-01 15 58938351 58938351 C T ADAM10 Missense_Mutation p.R213H 0.18 deleterious(0) benign(0.356) TCGA-XF-AAMJ-01 16 11362879 11362879 G A TNP2 Missense_Mutation p.R81C 0.22 deleterious(0.01) benign(0) TCGA-XF-AAMJ-01 16 51175492 51175492 G A SALL1 Missense_Mutation p.A214V 0.07 tolerated(0.23) possibly_damaging(0.536) TCGA-XF-AAMJ-01 17 7579581 7579582 GC - TP53 Frame_Shift_Del p.L35Ffs*7 0.21 TCGA-XF-AAMJ-01 18 14763786 14763786 C T ANKRD30B Missense_Mutation p.R308C 0.09 tolerated(0.1) possibly_damaging(0.556) TCGA-XF-AAMJ-01 18 63547696 63547696 G A CDH7 Missense_Mutation p.E642K 0.08 tolerated(0.78) possibly_damaging(0.657) TCGA-XF-AAMJ-01 18 65178556 65178556 G A DSEL Missense_Mutation p.S1107F 0.11 tolerated(0.05) possibly_damaging(0.784) TCGA-XF-AAMJ-01 19 37383159 37383159 A G ZNF829 Silent p.H259H 0.15 TCGA-XF-AAMJ-01 1 181726215 181726215 G T CACNA1E Nonsense_Mutation p.E1428* 0.09 TCGA-XF-AAMJ-01 1 247582029 247582029 G A NLRP3 5'UTR 0.36 TCGA-XF-AAMJ-01 1 52551835 52551835 A G BTF3L4 Missense_Mutation p.D141G 0.12 tolerated(0.07) benign(0.23) TCGA-XF-AAMJ-01 20 44526704 44526704 G A CTSA Missense_Mutation p.G457S 0.09 deleterious(0) probably_damaging(1) TCGA-XF-AAMJ-01 22 39262385 39262385 C A CBX6 Silent p.G356G 0.14 TCGA-XF-AAMJ-01 2 136567430 136567430 C T LCT Silent p.R829R 0.07 TCGA-XF-AAMJ-01 2 231174699 231174699 A C SP140 Missense_Mutation p.T707P 0.07 deleterious(0) probably_damaging(0.989) TCGA-XF-AAMJ-01 2 25038559 25038559 C T CENPO Silent p.F176F 0.18 TCGA-XF-AAMJ-01 2 67630623 67630623 G A ETAA1 Missense_Mutation p.S270N 0.23 tolerated(0.08) benign(0.273) TCGA-XF-AAMJ-01 2 73799684 73799684 G T ALMS1 Missense_Mutation p.M3559I 0.12 benign(0.002) TCGA-XF-AAMJ-01 2 80530672 80530672 G T LRRTM1 Silent p.L91L 0.07 TCGA-XF-AAMJ-01 2 80831274 80831274 G A CTNNA2 Missense_Mutation p.M755I 0.19 tolerated(0.06) benign(0.053) TCGA-XF-AAMJ-01 3 113002379 113002379 C T BOC Silent p.S851S 0.08 TCGA-XF-AAMJ-01 3 58516233 58516233 G A ACOX2 Missense_Mutation p.R318C 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAMJ-01 4 114199062 114199062 C T ANK2 Missense_Mutation p.R585C 0.22 probably_damaging(0.964) TCGA-XF-AAMJ-01 4 4322688 4322688 C G ZBTB49 Missense_Mutation p.S648C 0.21 tolerated(0.1) benign(0.004) TCGA-XF-AAMJ-01 5 13735963 13735963 C T DNAH5 Missense_Mutation p.R3845H 0.12 possibly_damaging(0.522) TCGA-XF-AAMJ-01 5 140202648 140202648 G T PCDHA5 Missense_Mutation p.G430C 0.11 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-XF-AAMJ-01 5 140530694 140530694 G A PCDHB6 Missense_Mutation p.V286I 0.16 tolerated(1) benign(0.001) TCGA-XF-AAMJ-01 5 176637121 176637122 - A NSD1 Frame_Shift_Ins p.N576Kfs*8 0.16 TCGA-XF-AAMJ-01 5 21751792 21751792 T A CDH12 3'UTR 0.19 TCGA-XF-AAMJ-01 6 139694176 139694176 G T CITED2 3'UTR 0.22 TCGA-XF-AAMJ-01 6 27114540 27114540 T C HIST1H2BK Missense_Mutation p.K13R 0.09 deleterious_low_confidence(0.04) benign(0.031) TCGA-XF-AAMJ-01 6 86181106 86181106 C G NT5E Silent p.V238V 0.24 TCGA-XF-AAMJ-01 7 138865896 138865896 C T TTC26 Silent p.S457S 0.07 TCGA-XF-AAMJ-01 7 148801692 148801692 C T ZNF425 Missense_Mutation p.R424H 0.09 tolerated(0.19) benign(0.315) TCGA-XF-AAMJ-01 7 151483604 151483604 C T PRKAG2 Silent p.P46P 0.23 TCGA-XF-AAMJ-01 7 151805363 151805363 C A GALNT11 Missense_Mutation p.A318E 0.21 tolerated(0.05) possibly_damaging(0.474) TCGA-XF-AAMJ-01 7 27237921 27237921 T G HOXA13 Missense_Mutation p.I355L 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-XF-AAMJ-01 7 99565998 99565998 G A AZGP1 Silent p.S131S 0.23 TCGA-XF-AAMJ-01 8 108306213 108306213 C T ANGPT1 Missense_Mutation p.R330H 0.08 deleterious(0) probably_damaging(1) TCGA-XF-AAMJ-01 8 27319223 27319223 G A CHRNA2 Missense_Mutation p.L505F 0.10 deleterious(0) probably_damaging(1) TCGA-XF-AAMJ-01 9 105765522 105765522 C G CYLC2 Missense_Mutation p.Q53E 0.16 tolerated(0.07) benign(0.425) TCGA-XF-AAMJ-01 9 127572129 127572129 G A OLFML2A Missense_Mutation p.G466D 0.06 deleterious(0) probably_damaging(0.982) TCGA-XF-AAMJ-01 X 2933065 2933065 C T ARSH Missense_Mutation p.P132L 0.44 deleterious(0.01) probably_damaging(1) TCGA-XF-AAML-01 10 101715783 101715783 G T DNMBP Missense_Mutation p.S483Y 0.37 tolerated_low_confidence(0.7) benign(0.157) TCGA-XF-AAML-01 10 103343418 103343418 C T POLL Silent p.G304G 0.48 TCGA-XF-AAML-01 10 11998332 11998332 C T UPF2 Missense_Mutation p.R854Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-XF-AAML-01 10 121563733 121563733 G T INPP5F Missense_Mutation p.D389Y 0.24 deleterious(0.04) possibly_damaging(0.864) TCGA-XF-AAML-01 10 18903391 18903391 C T NSUN6 Silent p.L191L 0.17 TCGA-XF-AAML-01 10 22675858 22675858 G C SPAG6 Missense_Mutation p.Q216H 0.13 tolerated(0.11) probably_damaging(0.972) TCGA-XF-AAML-01 10 27444452 27444452 G A MASTL Missense_Mutation p.E33K 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-XF-AAML-01 10 27577652 27577652 G A ARMC4P1 RNA 0.25 TCGA-XF-AAML-01 10 28420612 28420612 G A MPP7 Silent p.L108L 0.33 TCGA-XF-AAML-01 10 29813558 29813558 G A SVIL Missense_Mutation p.S810F 0.18 tolerated(0.2) benign(0.055) TCGA-XF-AAML-01 10 29820955 29820955 G A SVIL Missense_Mutation p.S662L 0.18 deleterious(0) possibly_damaging(0.87) TCGA-XF-AAML-01 10 31816064 31816064 G A ZEB1 Missense_Mutation p.E1084K 0.24 tolerated_low_confidence(0.05) benign(0.292) TCGA-XF-AAML-01 10 34636906 34636906 G A PARD3 Silent p.L735L 0.16 TCGA-XF-AAML-01 10 37520523 37520523 G C ANKRD30A 3'UTR 0.25 TCGA-XF-AAML-01 10 5781607 5781607 C G FAM208B Missense_Mutation p.Q492E 0.17 tolerated(0.46) benign(0.015) TCGA-XF-AAML-01 10 75525207 75525207 A C SEC24C Splice_Site p.X410_splice 0.68 TCGA-XF-AAML-01 10 87487646 87487646 G A GRID1 Missense_Mutation p.S500F 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-AAML-01 10 90582658 90582658 G A ANKRD22 3'UTR 0.36 TCGA-XF-AAML-01 11 105850386 105850386 G T GRIA4 Missense_Mutation p.D877Y 0.31 deleterious(0) probably_damaging(0.968) TCGA-XF-AAML-01 11 108032559 108032559 G A NPAT Missense_Mutation p.S1085F 0.16 deleterious(0) probably_damaging(0.916) TCGA-XF-AAML-01 11 108138018 108138018 G A ATM Missense_Mutation p.D863N 0.31 tolerated(0.47) benign(0.028) TCGA-XF-AAML-01 11 116649733 116649733 G A ZNF259 Missense_Mutation p.R430C 0.60 deleterious(0.04) benign(0.001) TCGA-XF-AAML-01 11 118486902 118486902 C A PHLDB1 Silent p.R111R 0.49 TCGA-XF-AAML-01 11 121437783 121437783 C T SORL1 Nonsense_Mutation p.Q1062* 0.23 TCGA-XF-AAML-01 11 128843974 128843974 G C ARHGAP32 Intron 0.18 TCGA-XF-AAML-01 11 128851832 128851832 C G ARHGAP32 Splice_Site p.X495_splice 0.35 TCGA-XF-AAML-01 11 1432644 1432644 G C BRSK2 Missense_Mutation p.E4Q 0.56 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-XF-AAML-01 11 17547981 17547981 C T USH1C Missense_Mutation p.R196Q 0.33 tolerated(0.11) benign(0.001) TCGA-XF-AAML-01 11 22360108 22360108 C T SLC17A6 Missense_Mutation p.A10V 0.29 tolerated_low_confidence(0.28) benign(0.001) TCGA-XF-AAML-01 11 3681428 3681428 G A ART1 Missense_Mutation p.A227T 0.34 tolerated(0.07) benign(0.367) TCGA-XF-AAML-01 11 47200713 47200713 G A PACSIN3 Silent p.F299F 0.35 TCGA-XF-AAML-01 11 47772834 47772834 C G FNBP4 Missense_Mutation p.E216Q 0.37 deleterious(0) probably_damaging(0.971) TCGA-XF-AAML-01 11 4967425 4967425 C T OR51A4 Silent p.V302V 0.15 TCGA-XF-AAML-01 11 5153123 5153123 G A OR52A5 Silent p.V250V 0.34 TCGA-XF-AAML-01 11 55657471 55657471 C A TRIM51 Missense_Mutation p.A272E 0.26 tolerated(0.07) benign(0.006) TCGA-XF-AAML-01 11 57080891 57080891 A T TNKS1BP1 Missense_Mutation p.V424D 0.73 tolerated(0.21) benign(0.072) TCGA-XF-AAML-01 11 60468498 60468498 G A MS4A8 Silent p.S55S 0.24 TCGA-XF-AAML-01 11 60640681 60640681 C T ZP1 Nonsense_Mutation p.Q387* 0.15 TCGA-XF-AAML-01 11 62600558 62600558 C T WDR74 Missense_Mutation p.D342N 0.15 deleterious(0.04) benign(0.003) TCGA-XF-AAML-01 11 63990556 63990556 C T FERMT3 Silent p.I573I 0.14 TCGA-XF-AAML-01 11 65338426 65338426 G C SSSCA1 Missense_Mutation p.D81H 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-XF-AAML-01 11 67765893 67765893 C T UNC93B1 Missense_Mutation p.M239I 0.12 deleterious(0.04) benign(0.416) TCGA-XF-AAML-01 11 69588123 69588123 C T FGF4 Missense_Mutation p.R192Q 0.35 deleterious(0) possibly_damaging(0.837) TCGA-XF-AAML-01 11 70336398 70336398 C T SHANK2 Missense_Mutation p.R846Q 0.11 tolerated(0.28) probably_damaging(0.949) TCGA-XF-AAML-01 11 76237612 76237612 C G C11orf30 Missense_Mutation p.S643C 0.25 deleterious(0.05) probably_damaging(0.971) TCGA-XF-AAML-01 11 89431712 89431712 C T FOLH1B RNA 0.33 TCGA-XF-AAML-01 11 92615951 92615951 G A FAT3 Missense_Mutation p.G4110E 0.25 possibly_damaging(0.845) TCGA-XF-AAML-01 11 93808435 93808435 C A HEPHL1 Missense_Mutation p.P534T 0.56 tolerated(0.31) possibly_damaging(0.864) TCGA-XF-AAML-01 12 11035261 11035261 C T PRH1 Missense_Mutation p.R46H 0.16 tolerated_low_confidence(0.17) benign(0.365) TCGA-XF-AAML-01 12 11214860 11214860 G A TAS2R46 Silent p.L12L 0.20 TCGA-XF-AAML-01 12 113285630 113285630 G A RPH3A Missense_Mutation p.M71I 0.65 tolerated(0.18) benign(0.056) TCGA-XF-AAML-01 12 11546147 11546147 G A PRB2 Nonsense_Mutation p.Q289* 0.46 TCGA-XF-AAML-01 12 122277562 122277562 A G HPD 3'UTR 0.44 TCGA-XF-AAML-01 12 130647674 130647674 G A FZD10 Missense_Mutation p.E63K 0.21 deleterious(0) probably_damaging(0.995) TCGA-XF-AAML-01 12 133331376 133331376 G T ANKLE2 Silent p.T175T 0.29 TCGA-XF-AAML-01 12 13716894 13716894 G A GRIN2B Missense_Mutation p.P1093L 0.47 deleterious(0.04) probably_damaging(1) TCGA-XF-AAML-01 12 26869149 26869149 C G ITPR2 Missense_Mutation p.L184F 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-XF-AAML-01 12 30783733 30783733 T A IPO8 3'UTR 0.05 TCGA-XF-AAML-01 12 32884324 32884324 C T DNM1L Missense_Mutation p.S412L 0.35 deleterious(0) possibly_damaging(0.891) TCGA-XF-AAML-01 12 34179259 34179259 C T ALG10 Silent p.G277G 0.38 TCGA-XF-AAML-01 12 416969 416969 G C KDM5A Nonsense_Mutation p.S1194* 0.22 TCGA-XF-AAML-01 12 45004718 45004718 C G NELL2 Missense_Mutation p.D544H 0.30 tolerated(0.22) probably_damaging(0.999) TCGA-XF-AAML-01 12 49219241 49219241 C T CACNB3 Missense_Mutation p.L200F 0.22 deleterious(0) probably_damaging(0.999) TCGA-XF-AAML-01 12 49724048 49724048 G A TROAP Missense_Mutation p.E474K 0.26 deleterious(0.01) probably_damaging(0.94) TCGA-XF-AAML-01 12 49920021 49920021 G A SPATS2 Missense_Mutation p.E541K 0.40 tolerated_low_confidence(0.09) benign(0.002) TCGA-XF-AAML-01 12 5022046 5022046 G T KCNA1 3'UTR 0.24 TCGA-XF-AAML-01 12 50856379 50856379 G A LARP4 Missense_Mutation p.R450K 0.18 tolerated(0.11) possibly_damaging(0.646) TCGA-XF-AAML-01 12 51883546 51883546 C G SLC4A8 Missense_Mutation p.I837M 0.34 tolerated(0.08) benign(0.019) TCGA-XF-AAML-01 12 52863503 52863503 C G KRT6C Missense_Mutation p.D459H 0.27 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 12 52942007 52942007 C T KRT71 Missense_Mutation p.E303K 0.23 deleterious(0.02) benign(0.258) TCGA-XF-AAML-01 12 54674516 54674516 G C HNRNPA1 5'Flank 0.34 TCGA-XF-AAML-01 12 56077608 56077608 C G METTL7B Silent p.L170L 0.63 TCGA-XF-AAML-01 12 56143331 56143331 C T GDF11 Missense_Mutation p.R297W 0.35 deleterious(0) probably_damaging(0.998) TCGA-XF-AAML-01 12 56480341 56480341 G A ERBB3 Missense_Mutation p.E150K 0.48 tolerated(0.92) possibly_damaging(0.583) TCGA-XF-AAML-01 12 56815941 56815941 C T TIMELESS Missense_Mutation p.E825K 0.23 tolerated(0.06) possibly_damaging(0.871) TCGA-XF-AAML-01 12 57398525 57398525 G A ZBTB39 Silent p.F59F 0.22 TCGA-XF-AAML-01 12 57485387 57485388 - GA NAB2 Frame_Shift_Ins p.S189Rfs*81 0.36 TCGA-XF-AAML-01 12 58158189 58158189 G C CYP27B1 Missense_Mutation p.L370V 0.24 deleterious(0) possibly_damaging(0.827) TCGA-XF-AAML-01 12 6499337 6499337 C T LTBR Silent p.F287F 0.12 TCGA-XF-AAML-01 12 66698630 66698630 C G HELB Missense_Mutation p.Q103E 0.27 tolerated(0.24) benign(0.008) TCGA-XF-AAML-01 12 6804656 6804656 C T PIANP Missense_Mutation p.R256Q 0.23 deleterious_low_confidence(0.02) benign(0.417) TCGA-XF-AAML-01 12 6952187 6952187 G A GNB3 Silent p.T50T 0.27 TCGA-XF-AAML-01 12 72338188 72338188 C T TPH2 Nonsense_Mutation p.Q124* 0.25 TCGA-XF-AAML-01 12 7550876 7550876 C G CD163L1 Silent p.V571V 0.23 TCGA-XF-AAML-01 12 91449292 91449292 G C KERA Nonsense_Mutation p.S256* 0.26 TCGA-XF-AAML-01 12 9845514 9845514 G A CLEC2D Missense_Mutation p.E150K 0.17 tolerated(0.09) possibly_damaging(0.821) TCGA-XF-AAML-01 13 111274709 111274709 C G CARKD Missense_Mutation p.Q83E 0.31 tolerated(0.46) possibly_damaging(0.492) TCGA-XF-AAML-01 13 113770090 113770090 G C F7 Missense_Mutation p.D183H 0.62 deleterious(0) probably_damaging(0.98) TCGA-XF-AAML-01 13 21006387 21006387 C G CRYL1 Missense_Mutation p.E163Q 0.38 tolerated_low_confidence(0.06) benign(0.07) TCGA-XF-AAML-01 13 28589818 28589818 C A FLT3 Missense_Mutation p.W854C 0.31 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 13 32929050 32929050 C G BRCA2 Missense_Mutation p.Q2354E 0.26 deleterious(0.01) possibly_damaging(0.848) TCGA-XF-AAML-01 13 41941786 41941786 C G NAA16 Nonsense_Mutation p.S584* 0.54 TCGA-XF-AAML-01 13 45147933 45147933 G A TSC22D1 Missense_Mutation p.P760S 0.30 tolerated(0.08) probably_damaging(0.92) TCGA-XF-AAML-01 13 46543644 46543644 C T ZC3H13 Missense_Mutation p.G1012D 0.69 unknown(0) TCGA-XF-AAML-01 13 48939096 48939096 G T RB1 Nonsense_Mutation p.G310* 0.38 TCGA-XF-AAML-01 13 50589876 50589876 C T KCNRG Nonsense_Mutation p.Q83* 0.34 TCGA-XF-AAML-01 13 61986395 61986395 C G PCDH20 Missense_Mutation p.D613H 0.40 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 13 76055673 76055673 C T TBC1D4 Silent p.P77P 0.25 TCGA-XF-AAML-01 13 77581700 77581700 T C FBXL3 Silent p.L289L 0.18 TCGA-XF-AAML-01 13 80125149 80125149 C G NDFIP2 Intron 0.23 TCGA-XF-AAML-01 14 102349808 102349808 G A PPP2R5C Missense_Mutation p.D211N 0.24 deleterious(0.01) probably_damaging(0.942) TCGA-XF-AAML-01 14 104571705 104571705 C T ASPG Missense_Mutation p.S364L 0.31 tolerated(0.24) benign(0.001) TCGA-XF-AAML-01 14 20917134 20917134 C G OSGEP Missense_Mutation p.Q182H 0.30 deleterious(0) probably_damaging(0.928) TCGA-XF-AAML-01 14 23078694 23078694 C T ABHD4 Nonsense_Mutation p.R273* 0.20 TCGA-XF-AAML-01 14 31354650 31354650 G A COCH Missense_Mutation p.V262I 0.27 tolerated(0.09) benign(0.338) TCGA-XF-AAML-01 14 33292802 33292802 C T AKAP6 Missense_Mutation p.S1928L 0.16 tolerated(0.22) benign(0.004) TCGA-XF-AAML-01 14 33293999 33293999 C A AKAP6 3'UTR 0.38 TCGA-XF-AAML-01 14 50249171 50249171 G C KLHDC2 Missense_Mutation p.R347T 0.43 tolerated(0.58) benign(0.023) TCGA-XF-AAML-01 14 53251260 53251260 C T GNPNAT1 Missense_Mutation p.E37K 0.16 tolerated(0.1) benign(0.007) TCGA-XF-AAML-01 14 58831004 58831004 G C ARID4A Missense_Mutation p.D733H 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.627) TCGA-XF-AAML-01 14 74424975 74424975 T C COQ6 Silent p.L203L 0.57 TCGA-XF-AAML-01 14 78174299 78174299 C T ALKBH1 Missense_Mutation p.E17K 0.33 deleterious_low_confidence(0.01) benign(0.371) TCGA-XF-AAML-01 14 79181138 79181138 C A NRXN3 Missense_Mutation p.A194D 0.29 deleterious(0) probably_damaging(0.999) TCGA-XF-AAML-01 14 94112977 94112977 C G UNC79 Missense_Mutation p.S1885C 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-XF-AAML-01 14 94545645 94545645 G A DDX24 Silent p.V148V 0.59 TCGA-XF-AAML-01 15 22933840 22933840 G C CYFIP1 Missense_Mutation p.M253I 0.07 deleterious(0.01) benign(0.036) TCGA-XF-AAML-01 15 23932341 23932341 C T NDN Silent p.L8L 0.26 TCGA-XF-AAML-01 15 25318342 25318342 G A SNORD116-9 RNA 0.22 TCGA-XF-AAML-01 15 42110219 42110219 C T MAPKBP1 Silent p.I645I 0.23 TCGA-XF-AAML-01 15 43815805 43815805 G A MAP1A Missense_Mutation p.E712K 0.18 probably_damaging(0.997) TCGA-XF-AAML-01 15 44776470 44776470 G T CTDSPL2 Missense_Mutation p.D79Y 0.24 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-XF-AAML-01 15 45412383 45412383 G A DUOXA1 Silent p.L230L 0.16 TCGA-XF-AAML-01 15 52879364 52879364 G A FAM214A Missense_Mutation p.S954L 0.24 deleterious(0) probably_damaging(0.973) TCGA-XF-AAML-01 15 62223292 62223292 G A VPS13C Missense_Mutation p.S2012L 0.21 deleterious(0.04) benign(0.409) TCGA-XF-AAML-01 15 65445896 65445896 G A CLPX Missense_Mutation p.R565W 0.32 deleterious(0) probably_damaging(0.998) TCGA-XF-AAML-01 15 75094382 75094382 C G CSK Silent p.L376L 0.19 TCGA-XF-AAML-01 15 75221540 75221540 G A COX5A Missense_Mutation p.S45L 0.29 tolerated(0.1) benign(0.039) TCGA-XF-AAML-01 15 75499899 75499899 G A C15orf39 Missense_Mutation p.D504N 0.19 tolerated(0.72) possibly_damaging(0.728) TCGA-XF-AAML-01 15 77057685 77057685 G A SCAPER Missense_Mutation p.R536C 0.32 deleterious(0) probably_damaging(0.988) TCGA-XF-AAML-01 15 78566643 78566643 C G DNAJA4 Missense_Mutation p.Q204E 0.32 deleterious(0.04) benign(0.347) TCGA-XF-AAML-01 15 81134357 81134357 G A KIAA1199 Intron 0.40 TCGA-XF-AAML-01 15 85400106 85400106 G A ALPK3 Missense_Mutation p.E915K 0.30 deleterious_low_confidence(0.01) benign(0.046) TCGA-XF-AAML-01 15 89804929 89804929 C T FANCI Silent p.L134L 0.31 TCGA-XF-AAML-01 15 89865192 89865192 C T POLG Splice_Site p.X827_splice 0.23 TCGA-XF-AAML-01 15 90226428 90226428 C T PEX11A 3'UTR 0.50 TCGA-XF-AAML-01 15 91185343 91185343 G A CRTC3 Missense_Mutation p.E611K 0.26 deleterious(0) possibly_damaging(0.876) TCGA-XF-AAML-01 15 92459366 92459366 G C SLCO3A1 Silent p.L108L 0.19 TCGA-XF-AAML-01 15 94928743 94928743 C A MCTP2 Missense_Mutation p.P593T 0.33 deleterious(0) probably_damaging(0.992) TCGA-XF-AAML-01 15 99250978 99250978 G A IGF1R Silent p.E94E 0.12 TCGA-XF-AAML-01 16 10996617 10996617 C G CIITA Missense_Mutation p.S244C 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-XF-AAML-01 16 12142328 12142328 C T SNX29 Missense_Mutation p.T200M 0.16 deleterious(0) probably_damaging(0.998) TCGA-XF-AAML-01 16 1470094 1470094 C T C16orf91 Silent p.V307V 0.27 TCGA-XF-AAML-01 16 15675178 15675178 G A C16orf45 Missense_Mutation p.E137K 0.46 deleterious(0.01) possibly_damaging(0.827) TCGA-XF-AAML-01 16 16244529 16244529 C T ABCC6 Missense_Mutation p.E1437K 0.83 deleterious(0) possibly_damaging(0.468) TCGA-XF-AAML-01 16 20781506 20781506 C A ACSM3 Missense_Mutation p.F50L 0.11 tolerated(0.19) benign(0.164) TCGA-XF-AAML-01 16 2124383 2124383 C T TSC2 Silent p.F846F 0.50 TCGA-XF-AAML-01 16 26147085 26147085 C T HS3ST4 Missense_Mutation p.S296F 0.11 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 16 2815614 2815614 G A SRRM2 Silent p.P1695P 0.56 TCGA-XF-AAML-01 16 30779606 30779606 G A RNF40 Silent p.K578K 0.38 TCGA-XF-AAML-01 16 47684517 47684517 C G PHKB Silent p.L620L 0.18 TCGA-XF-AAML-01 16 57054678 57054678 G C NLRC5 Silent p.V18V 0.44 TCGA-XF-AAML-01 16 66612826 66612826 C T CMTM1 Silent p.V261V 0.26 TCGA-XF-AAML-01 16 67692674 67692674 C G ACD Missense_Mutation p.E317Q 0.36 tolerated(0.07) benign(0.346) TCGA-XF-AAML-01 16 67860965 67860965 G C TSNAXIP1 Missense_Mutation p.E498Q 0.47 tolerated(0.11) probably_damaging(0.969) TCGA-XF-AAML-01 16 67861210 67861210 G A TSNAXIP1 Missense_Mutation p.E521K 0.25 tolerated(0.19) possibly_damaging(0.775) TCGA-XF-AAML-01 16 67862415 67862415 C T CENPT Silent p.K508K 0.27 TCGA-XF-AAML-01 16 69366758 69366758 G A COG8 Missense_Mutation p.R481C 0.49 deleterious(0) probably_damaging(0.917) TCGA-XF-AAML-01 16 70975539 70975539 C T HYDIN Missense_Mutation p.E2285K 0.45 probably_damaging(0.953) TCGA-XF-AAML-01 16 722085 722085 C T RHOT2 Silent p.L367L 0.51 TCGA-XF-AAML-01 16 735676 735676 C T WDR24 Intron 0.24 TCGA-XF-AAML-01 16 74485915 74485915 G C GLG1 3'UTR 0.24 TCGA-XF-AAML-01 16 88958666 88958666 C G CBFA2T3 Missense_Mutation p.V203L 0.18 deleterious(0.02) possibly_damaging(0.648) TCGA-XF-AAML-01 16 8999146 8999146 C T USP7 Missense_Mutation p.E491K 0.56 tolerated(0.63) benign(0.001) TCGA-XF-AAML-01 16 90130108 90130108 C T PRDM7 Silent p.L140L 0.35 TCGA-XF-AAML-01 17 10554858 10554858 G C MYH3 Missense_Mutation p.S159C 0.17 deleterious(0) possibly_damaging(0.87) TCGA-XF-AAML-01 17 12639522 12639522 G A MYOCD Missense_Mutation p.E154K 0.17 deleterious(0) possibly_damaging(0.769) TCGA-XF-AAML-01 17 16852216 16852216 C T TNFRSF13B Missense_Mutation p.G94E 0.44 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 17 18965338 18965338 A T SNORD3B-1 RNA 0.09 TCGA-XF-AAML-01 17 19319266 19319266 C A RNF112 Silent p.L558L 0.23 TCGA-XF-AAML-01 17 26943669 26943669 C T KIAA0100 Missense_Mutation p.D2042N 0.32 deleterious(0.03) possibly_damaging(0.47) TCGA-XF-AAML-01 17 27013384 27013384 T C SUPT6H Missense_Mutation p.F839L 0.26 tolerated(0.09) benign(0.05) TCGA-XF-AAML-01 17 3030260 3030260 C T OR1G1 Missense_Mutation p.E196K 0.16 tolerated(0.09) probably_damaging(0.992) TCGA-XF-AAML-01 17 33288311 33288311 C T CCT6B Silent p.L34L 0.15 TCGA-XF-AAML-01 17 34072352 34072352 G A GAS2L2 Nonsense_Mutation p.Q722* 0.23 TCGA-XF-AAML-01 17 34590395 34590395 C T TBC1D3C Missense_Mutation p.M20I 0.13 tolerated(0.14) benign(0.206) TCGA-XF-AAML-01 17 3638126 3638126 C T ITGAE Silent p.L880L 0.18 TCGA-XF-AAML-01 17 36925941 36925941 G C PIP4K2B 3'UTR 0.16 TCGA-XF-AAML-01 17 36935668 36935668 G A PIP4K2B Missense_Mutation p.R208W 0.22 deleterious(0) probably_damaging(0.987) TCGA-XF-AAML-01 17 37009193 37009193 C T RPL23 Intron 0.29 TCGA-XF-AAML-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.20 deleterious(0) probably_damaging(0.994) TCGA-XF-AAML-01 17 37868682 37868682 C T ERBB2 Silent p.L377L 0.21 TCGA-XF-AAML-01 17 39680234 39680234 C T KRT19 Missense_Mutation p.D322N 0.43 tolerated(0.6) benign(0.003) TCGA-XF-AAML-01 17 39680712 39680713 - T KRT19 Frame_Shift_Ins p.I248Dfs*4 0.23 TCGA-XF-AAML-01 17 40023957 40023957 C T ACLY 3'UTR 0.29 TCGA-XF-AAML-01 17 40278770 40278770 G A RAB5C Intron 0.22 TCGA-XF-AAML-01 17 40278824 40278824 C G RAB5C Missense_Mutation p.E195Q 0.16 deleterious(0) probably_damaging(0.989) TCGA-XF-AAML-01 17 40714412 40714412 C T COASY 5'UTR 0.15 TCGA-XF-AAML-01 17 42086035 42086035 A C NAGS 3'UTR 0.13 TCGA-XF-AAML-01 17 42397575 42397575 C G SLC25A39 Missense_Mutation p.G318A 0.21 tolerated(0.07) possibly_damaging(0.776) TCGA-XF-AAML-01 17 45886259 45886259 G A OSBPL7 Silent p.S756S 0.21 TCGA-XF-AAML-01 17 45886353 45886353 G C OSBPL7 Nonsense_Mutation p.S725* 0.16 TCGA-XF-AAML-01 17 46919186 46919186 A G CALCOCO2 Silent p.T39T 0.44 TCGA-XF-AAML-01 17 48435844 48435844 G A XYLT2 Missense_Mutation p.E740K 0.18 deleterious(0.02) possibly_damaging(0.471) TCGA-XF-AAML-01 17 48538699 48538699 C T ACSF2 Nonsense_Mutation p.Q141* 0.11 TCGA-XF-AAML-01 17 48827920 48827920 G C LUC7L3 Missense_Mutation p.Q399H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-XF-AAML-01 17 53046038 53046038 C G COX11 5'UTR 0.17 TCGA-XF-AAML-01 17 56358093 56358093 G A MPO Silent p.L9L 0.19 TCGA-XF-AAML-01 17 60087972 60087972 C G MED13 Missense_Mutation p.D636H 0.21 deleterious(0) possibly_damaging(0.885) TCGA-XF-AAML-01 17 62028916 62028916 G A SCN4A Silent p.L907L 0.20 TCGA-XF-AAML-01 17 62082629 62082629 C A ICAM2 Nonsense_Mutation p.E56* 0.37 TCGA-XF-AAML-01 17 63049767 63049767 C G GNA13 Missense_Mutation p.K121N 0.20 tolerated(0.36) benign(0.001) TCGA-XF-AAML-01 17 63545652 63545652 C T AXIN2 Missense_Mutation p.M314I 0.21 tolerated(0.05) benign(0.034) TCGA-XF-AAML-01 17 6513461 6513461 C T KIAA0753 Missense_Mutation p.R522K 0.16 tolerated(1) benign(0.001) TCGA-XF-AAML-01 17 67243771 67243771 G A ABCA5 Silent p.L1612L 0.14 TCGA-XF-AAML-01 17 7162032 7162032 G A ELP5 Intron 0.24 TCGA-XF-AAML-01 17 73258010 73258010 G A MRPS7 Missense_Mutation p.R10Q 0.24 tolerated_low_confidence(0.44) benign(0.009) TCGA-XF-AAML-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.14 deleterious(0) probably_damaging(0.947) TCGA-XF-AAML-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.40 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 17 7578388 7578388 C T TP53 Missense_Mutation p.R181H 0.29 deleterious(0.02) probably_damaging(0.977) TCGA-XF-AAML-01 17 76203000 76203000 G A AFMID Silent p.L303L 0.17 TCGA-XF-AAML-01 17 77082389 77082389 C A ENGASE Silent p.A730A 0.22 TCGA-XF-AAML-01 17 77709177 77709177 C T ENPP7 Silent p.S245S 0.11 TCGA-XF-AAML-01 17 78262520 78262520 C T RNF213 Missense_Mutation p.P300L 0.17 benign(0.004) TCGA-XF-AAML-01 17 78398868 78398868 C T ENDOV Silent p.L185L 0.14 TCGA-XF-AAML-01 17 79813391 79813391 C T P4HB Missense_Mutation p.D142N 0.20 tolerated(0.19) benign(0.012) TCGA-XF-AAML-01 17 8132718 8132718 G A CTC1 Nonsense_Mutation p.Q1020* 0.21 TCGA-XF-AAML-01 17 9684823 9684823 C G DHRS7C Missense_Mutation p.L81F 0.23 deleterious(0.01) probably_damaging(1) TCGA-XF-AAML-01 18 23758839 23758839 G C PSMA8 Missense_Mutation p.E181Q 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-XF-AAML-01 18 25585828 25585828 C T CDH2 Missense_Mutation p.E278K 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-XF-AAML-01 18 2616453 2616453 G A NDC80 Silent p.Q603Q 0.58 TCGA-XF-AAML-01 18 3277847 3277847 G A MYL12B Missense_Mutation p.R144K 0.17 tolerated(0.4) benign(0.001) TCGA-XF-AAML-01 18 43437939 43437939 C T EPG5 Missense_Mutation p.E2441K 0.29 tolerated(0.06) benign(0.081) TCGA-XF-AAML-01 18 47014925 47014925 C A RPL17 Missense_Mutation p.K173N 0.12 deleterious(0.02) possibly_damaging(0.511) TCGA-XF-AAML-01 18 47566536 47566536 G A MYO5B Missense_Mutation p.S96F 0.32 deleterious(0) probably_damaging(0.987) TCGA-XF-AAML-01 18 48703274 48703274 C T MEX3C Missense_Mutation p.G476E 0.29 deleterious(0.01) benign(0.177) TCGA-XF-AAML-01 18 55218001 55218001 G C FECH Silent p.L411L 0.29 TCGA-XF-AAML-01 18 56816838 56816838 A G SEC11C Missense_Mutation p.I61V 0.48 tolerated(0.44) benign(0.015) TCGA-XF-AAML-01 18 61058306 61058306 C T VPS4B Missense_Mutation p.D413N 0.22 deleterious(0.01) probably_damaging(1) TCGA-XF-AAML-01 18 8113684 8113684 G A PTPRM Missense_Mutation p.G686E 0.13 deleterious(0) probably_damaging(0.995) TCGA-XF-AAML-01 19 10169621 10169621 G C C3P1 RNA 0.17 TCGA-XF-AAML-01 19 10363231 10363231 C G MRPL4 Silent p.L43L 0.18 TCGA-XF-AAML-01 19 10672474 10672474 C T KRI1 Missense_Mutation p.R150K 0.56 tolerated(0.24) benign(0.006) TCGA-XF-AAML-01 19 10792775 10792775 C T ILF3 Silent p.A429A 0.72 TCGA-XF-AAML-01 19 11688075 11688075 C T ACP5 Missense_Mutation p.D20N 0.18 tolerated(0.54) benign(0.002) TCGA-XF-AAML-01 19 11942450 11942450 C T ZNF440 Silent p.F153F 0.16 TCGA-XF-AAML-01 19 11943603 11943603 C T ZNF440 Silent p.L538L 0.18 TCGA-XF-AAML-01 19 11944616 11944616 G T ZNF440 3'UTR 0.11 TCGA-XF-AAML-01 19 11979065 11979065 C T ZNF439 Missense_Mutation p.S394F 0.31 tolerated(0.69) possibly_damaging(0.906) TCGA-XF-AAML-01 19 12786390 12786390 C T WDR83 Silent p.A284A 0.19 TCGA-XF-AAML-01 19 16606664 16606664 C T CALR3 Splice_Site p.X31_splice 0.19 TCGA-XF-AAML-01 19 17927779 17927779 G C INSL3 Silent p.P125P 0.20 TCGA-XF-AAML-01 19 18119091 18119091 G A ARRDC2 5'UTR 0.25 TCGA-XF-AAML-01 19 19030098 19030098 G C COPE Missense_Mutation p.F20L 0.24 deleterious(0.04) benign(0.393) TCGA-XF-AAML-01 19 19162728 19162728 G A ARMC6 Missense_Mutation p.D193N 0.20 tolerated(0.38) benign(0.002) TCGA-XF-AAML-01 19 19738055 19738055 G C LPAR2 Missense_Mutation p.I13M 0.17 tolerated(0.66) benign(0.028) TCGA-XF-AAML-01 19 19749051 19749051 C T GMIP Missense_Mutation p.E236K 0.27 tolerated(0.15) benign(0.18) TCGA-XF-AAML-01 19 20044760 20044760 G C ZNF93 Missense_Mutation p.K332N 0.22 deleterious(0.03) probably_damaging(0.909) TCGA-XF-AAML-01 19 20045683 20045683 G T ZNF93 3'UTR 0.27 TCGA-XF-AAML-01 19 21606572 21606572 C T ZNF493 Missense_Mutation p.H371Y 0.14 deleterious(0) probably_damaging(0.912) TCGA-XF-AAML-01 19 35251371 35251371 G A ZNF599 Missense_Mutation p.S112F 0.34 tolerated(0.2) benign(0.001) TCGA-XF-AAML-01 19 37976075 37976075 G C ZNF570 Missense_Mutation p.Q517H 0.30 deleterious(0.03) benign(0.082) TCGA-XF-AAML-01 19 38949946 38949946 C T RYR1 Silent p.F776F 0.27 TCGA-XF-AAML-01 19 4283143 4283143 C T SHD Missense_Mutation p.R166W 0.26 deleterious(0.01) possibly_damaging(0.708) TCGA-XF-AAML-01 19 4418052 4418052 G C CHAF1A Missense_Mutation p.K332N 0.21 deleterious(0) unknown(0) TCGA-XF-AAML-01 19 49657360 49657360 C T HRC Missense_Mutation p.E379K 0.38 deleterious(0.04) possibly_damaging(0.82) TCGA-XF-AAML-01 19 51219555 51219555 C G SHANK1 Missense_Mutation p.E146Q 0.17 probably_damaging(0.977) TCGA-XF-AAML-01 19 5134006 5134006 C T KDM4B Silent p.F673F 0.14 TCGA-XF-AAML-01 19 52439340 52439340 G T ZNF613 5'UTR 0.40 TCGA-XF-AAML-01 19 52519453 52519453 C G ZNF614 Missense_Mutation p.Q466H 0.29 tolerated(0.3) probably_damaging(0.968) TCGA-XF-AAML-01 19 55995161 55995161 C T ZNF628 Silent p.L867L 0.38 TCGA-XF-AAML-01 19 56614418 56614418 G A ZNF787 Intron 0.62 TCGA-XF-AAML-01 19 5687343 5687343 G A HSD11B1L Silent p.L153L 0.10 TCGA-XF-AAML-01 19 6913663 6913663 G C EMR1 Splice_Site p.X375_splice 0.28 TCGA-XF-AAML-01 19 8190893 8190893 C T FBN3 Missense_Mutation p.E872K 0.10 deleterious(0) probably_damaging(0.995) TCGA-XF-AAML-01 19 8191377 8191377 C T FBN3 Silent p.G843G 0.25 TCGA-XF-AAML-01 1 100756989 100756989 G A RTCA Missense_Mutation p.E357K 0.18 tolerated(0.37) benign(0.007) TCGA-XF-AAML-01 1 101377760 101377760 C T SLC30A7 Silent p.F159F 0.17 TCGA-XF-AAML-01 1 109394828 109394828 T C AKNAD1 Silent p.S153S 0.18 TCGA-XF-AAML-01 1 110774872 110774872 C A KCNC4 Missense_Mutation p.Q617K 0.17 tolerated_low_confidence(0.68) benign(0) TCGA-XF-AAML-01 1 112303151 112303151 C T DDX20 Silent p.L207L 0.16 TCGA-XF-AAML-01 1 112309357 112309357 C T DDX20 Nonsense_Mutation p.Q771* 0.21 TCGA-XF-AAML-01 1 114514630 114514630 C T HIPK1 Intron 0.12 TCGA-XF-AAML-01 1 11576122 11576122 G A PTCHD2 Silent p.Q551Q 0.37 TCGA-XF-AAML-01 1 116946586 116946586 G A ATP1A1 Missense_Mutation p.R1011Q 0.12 tolerated(0.08) benign(0.018) TCGA-XF-AAML-01 1 118584497 118584497 C G SPAG17 Missense_Mutation p.E995Q 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-XF-AAML-01 1 11897446 11897446 G C CLCN6 Missense_Mutation p.D729H 0.29 deleterious(0.03) benign(0.309) TCGA-XF-AAML-01 1 12640575 12640575 C T DHRS3 Silent p.Q105Q 0.10 TCGA-XF-AAML-01 1 12785373 12785373 C A AADACL3 Missense_Mutation p.L155M 0.20 deleterious(0) probably_damaging(0.993) TCGA-XF-AAML-01 1 12954917 12954917 G T PRAMEF10 Silent p.L122L 0.36 TCGA-XF-AAML-01 1 14107600 14107600 G A PRDM2 Missense_Mutation p.E1104K 0.13 unknown(0) TCGA-XF-AAML-01 1 1423280 1423280 C T ATAD3B Missense_Mutation p.R418W 0.13 deleterious(0.03) possibly_damaging(0.468) TCGA-XF-AAML-01 1 145015895 145015895 G A RP11-326G21.1 5'Flank 0.03 TCGA-XF-AAML-01 1 145538026 145538026 C G ITGA10 Missense_Mutation p.S902C 0.09 deleterious(0.02) possibly_damaging(0.778) TCGA-XF-AAML-01 1 148346621 148346621 G C NBPF20 Missense_Mutation p.Q46E 0.10 benign(0.054) TCGA-XF-AAML-01 1 149901051 149901051 G A MTMR11 Silent p.L700L 0.11 TCGA-XF-AAML-01 1 149902632 149902632 G C MTMR11 Intron 0.17 TCGA-XF-AAML-01 1 153631344 153631344 C G SNAPIN Missense_Mutation p.S42C 0.16 deleterious(0.02) possibly_damaging(0.54) TCGA-XF-AAML-01 1 153998059 153998059 C G NUP210L Missense_Mutation p.E1361Q 0.21 deleterious(0) probably_damaging(0.985) TCGA-XF-AAML-01 1 154557151 154557151 C T ADAR 3'UTR 0.25 TCGA-XF-AAML-01 1 155221306 155221306 C T FAM189B Missense_Mutation p.R294Q 0.26 deleterious(0.03) probably_damaging(0.96) TCGA-XF-AAML-01 1 155324285 155324285 C T ASH1L Missense_Mutation p.D2398N 0.23 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-XF-AAML-01 1 155449333 155449333 G A ASH1L Nonsense_Mutation p.Q1110* 0.41 TCGA-XF-AAML-01 1 156238106 156238106 G A SMG5 Missense_Mutation p.R272W 0.20 deleterious(0) possibly_damaging(0.809) TCGA-XF-AAML-01 1 156563749 156563749 C G APOA1BP Missense_Mutation p.S247C 0.20 tolerated(1) benign(0.112) TCGA-XF-AAML-01 1 161518329 161518329 G C FCGR3A Missense_Mutation p.I103M 0.05 deleterious(0.01) possibly_damaging(0.75) TCGA-XF-AAML-01 1 161599686 161599686 G C FCGR3B Missense_Mutation p.I103M 0.14 deleterious(0.01) possibly_damaging(0.856) TCGA-XF-AAML-01 1 16558560 16558560 C T RSG1 Missense_Mutation p.E254K 0.24 tolerated_low_confidence(0.11) benign(0.013) TCGA-XF-AAML-01 1 167805568 167805568 G A ADCY10 Silent p.L1096L 0.15 TCGA-XF-AAML-01 1 168074102 168074102 C T GPR161 Missense_Mutation p.R16Q 0.24 tolerated_low_confidence(0.63) benign(0.001) TCGA-XF-AAML-01 1 169792600 169792600 C T C1orf112 Missense_Mutation p.L279F 0.17 deleterious(0) possibly_damaging(0.868) TCGA-XF-AAML-01 1 169816899 169816899 T A C1orf112 Missense_Mutation p.D671E 0.17 tolerated(0.3) probably_damaging(0.911) TCGA-XF-AAML-01 1 173819576 173819576 G T DARS2 Nonsense_Mutation p.E435* 0.12 TCGA-XF-AAML-01 1 175306718 175306718 C G TNR Silent p.L1160L 0.22 TCGA-XF-AAML-01 1 178408708 178408708 G A RASAL2 Missense_Mutation p.E276K 0.13 deleterious(0) probably_damaging(0.978) TCGA-XF-AAML-01 1 180772645 180772645 C A XPR1 Missense_Mutation p.F115L 0.20 tolerated(0.31) benign(0.008) TCGA-XF-AAML-01 1 18960894 18960894 G C PAX7 Missense_Mutation p.E61D 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-XF-AAML-01 1 192335099 192335099 G C RGS21 Missense_Mutation p.E102Q 0.13 tolerated(0.43) benign(0.011) TCGA-XF-AAML-01 1 196928092 196928092 G T CFHR2 Missense_Mutation p.R232I 0.36 deleterious(0) possibly_damaging(0.805) TCGA-XF-AAML-01 1 197032044 197032044 G A F13B Nonsense_Mutation p.Q70* 0.48 TCGA-XF-AAML-01 1 197313437 197313437 G A CRB1 Missense_Mutation p.E227K 0.20 tolerated(0.06) benign(0.009) TCGA-XF-AAML-01 1 20107181 20107181 C T TMCO4 Missense_Mutation p.G24E 0.27 tolerated(0.58) benign(0.219) TCGA-XF-AAML-01 1 203743453 203743453 G A LAX1 Missense_Mutation p.E281K 0.17 tolerated(0.19) probably_damaging(0.981) TCGA-XF-AAML-01 1 204423782 204423782 G A PIK3C2B Intron 0.21 TCGA-XF-AAML-01 1 205035604 205035604 G A CNTN2 Missense_Mutation p.D618N 0.25 tolerated(0.38) benign(0.007) TCGA-XF-AAML-01 1 205035605 205035605 A T CNTN2 Missense_Mutation p.D618V 0.23 deleterious(0) benign(0.261) TCGA-XF-AAML-01 1 205057893 205057893 G C RBBP5 3'UTR 0.29 TCGA-XF-AAML-01 1 206574968 206574968 T - SRGAP2 Frame_Shift_Del p.M255* 0.41 TCGA-XF-AAML-01 1 207110450 207110450 G A PIGR Silent p.F345F 0.18 TCGA-XF-AAML-01 1 207640078 207640078 C T CR2 Missense_Mutation p.S89F 0.30 deleterious(0.01) possibly_damaging(0.765) TCGA-XF-AAML-01 1 207644084 207644084 G C CR2 Splice_Site p.X409_splice 0.15 TCGA-XF-AAML-01 1 20879509 20879509 G A FAM43B Missense_Mutation p.E15K 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-XF-AAML-01 1 210016851 210016851 C T DIEXF Missense_Mutation p.H613Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-XF-AAML-01 1 212799483 212799483 G C FAM71A Missense_Mutation p.E422Q 0.32 deleterious(0.03) benign(0.074) TCGA-XF-AAML-01 1 227216454 227216454 G C CDC42BPA Missense_Mutation p.L1411V 0.17 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 1 228505428 228505428 C T OBSCN Missense_Mutation p.H5566Y 0.28 benign(0.008) TCGA-XF-AAML-01 1 231131640 231131640 C A ARV1 Missense_Mutation p.P195T 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-XF-AAML-01 1 233482330 233482330 C G MLK4 Missense_Mutation p.I316M 0.12 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 1 235973317 235973317 T C LYST Silent p.K267K 0.21 TCGA-XF-AAML-01 1 240371060 240371060 G A FMN2 Missense_Mutation p.G983E 0.14 unknown(0) TCGA-XF-AAML-01 1 24112804 24112804 G A PITHD1 Splice_Site p.X142_splice 0.44 TCGA-XF-AAML-01 1 246704483 246704483 C T TFB2M Silent p.A347A 0.30 TCGA-XF-AAML-01 1 27107180 27107180 C A ARID1A Nonsense_Mutation p.S2264* 0.47 TCGA-XF-AAML-01 1 27874136 27874136 G A AHDC1 Silent p.A1497A 0.71 TCGA-XF-AAML-01 1 28477335 28477335 G A PTAFR Silent p.F66F 0.16 TCGA-XF-AAML-01 1 31532158 31532158 G A PUM1 Nonsense_Mutation p.Q86* 0.46 TCGA-XF-AAML-01 1 32498811 32498811 G T KHDRBS1 Missense_Mutation p.G216V 0.28 deleterious(0.01) probably_damaging(1) TCGA-XF-AAML-01 1 35476164 35476164 G A ZMYM6 Missense_Mutation p.S459F 0.31 tolerated(0.13) possibly_damaging(0.882) TCGA-XF-AAML-01 1 3673382 3673382 C T CCDC27 Silent p.T213T 0.21 TCGA-XF-AAML-01 1 39945497 39945497 G A MACF1 Missense_Mutation p.R5241K 0.41 benign(0.063) TCGA-XF-AAML-01 1 44303926 44303926 C T ST3GAL3 Missense_Mutation p.S151L 0.15 tolerated(0.49) probably_damaging(0.982) TCGA-XF-AAML-01 1 45480676 45480676 G C UROD Missense_Mutation p.E314Q 0.10 tolerated(0.17) benign(0.003) TCGA-XF-AAML-01 1 46725691 46725691 C G RAD54L Silent p.L109L 0.09 TCGA-XF-AAML-01 1 47348688 47348688 G A CYP4Z2P RNA 0.08 TCGA-XF-AAML-01 1 47745972 47745972 G C STIL Missense_Mutation p.P720A 0.15 deleterious(0.02) probably_damaging(0.983) TCGA-XF-AAML-01 1 47745998 47745998 G A STIL Missense_Mutation p.S711L 0.15 deleterious(0) possibly_damaging(0.474) TCGA-XF-AAML-01 1 47746038 47746038 G A STIL Nonsense_Mutation p.Q698* 0.13 TCGA-XF-AAML-01 1 48695039 48695039 C T SLC5A9 Missense_Mutation p.P163S 0.21 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 1 52705160 52705160 G A ZFYVE9 Missense_Mutation p.E691K 0.20 tolerated(0.28) probably_damaging(0.998) TCGA-XF-AAML-01 1 59248409 59248409 C T JUN Missense_Mutation p.E112K 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-XF-AAML-01 1 86249846 86249846 C T COL24A1 Missense_Mutation p.E1391K 0.21 deleterious(0.01) possibly_damaging(0.906) TCGA-XF-AAML-01 1 94939357 94939357 G C ABCD3 Missense_Mutation p.R124T 0.17 tolerated(0.33) benign(0.002) TCGA-XF-AAML-01 1 98039493 98039493 G C DPYD Missense_Mutation p.L388V 0.22 tolerated(0.19) benign(0.006) TCGA-XF-AAML-01 20 10393540 10393540 C T MKKS Missense_Mutation p.R208K 0.33 tolerated(0.15) benign(0.008) TCGA-XF-AAML-01 20 32251447 32251447 G C C20orf144 Missense_Mutation p.R79T 0.20 tolerated(1) benign(0) TCGA-XF-AAML-01 20 32251464 32251464 G A C20orf144 Missense_Mutation p.E85K 0.50 tolerated(0.11) benign(0.001) TCGA-XF-AAML-01 20 33147693 33147693 C T MAP1LC3A Silent p.F123F 0.24 TCGA-XF-AAML-01 20 33894539 33894539 C T UQCC1 Missense_Mutation p.R232K 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-XF-AAML-01 20 34317447 34317447 G A RBM39 Missense_Mutation p.S100F 0.15 deleterious(0.03) benign(0) TCGA-XF-AAML-01 20 36625164 36625164 C T TTI1 Silent p.E995E 0.10 TCGA-XF-AAML-01 20 39832326 39832326 G C ZHX3 Missense_Mutation p.P411A 0.11 deleterious(0.03) possibly_damaging(0.844) TCGA-XF-AAML-01 20 43577465 43577465 C G TOMM34 Missense_Mutation p.E202Q 0.13 tolerated(0.87) benign(0.421) TCGA-XF-AAML-01 20 44006242 44006242 C T TP53TG5 Silent p.E20E 0.15 TCGA-XF-AAML-01 20 47752382 47752382 A G STAU1 Silent p.P199P 0.28 TCGA-XF-AAML-01 20 5170800 5170800 C T CDS2 Nonsense_Mutation p.Q420* 0.30 TCGA-XF-AAML-01 20 5283187 5283187 G A PROKR2 Silent p.L218L 0.41 TCGA-XF-AAML-01 20 56136621 56136621 G A PCK1 Missense_Mutation p.E52K 0.17 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 20 56886099 56886099 G T RAB22A Missense_Mutation p.D13Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 20 6065827 6065827 C T FERMT1 Silent p.L493L 0.35 TCGA-XF-AAML-01 21 16337172 16337172 C T NRIP1 Silent p.T1114T 0.30 TCGA-XF-AAML-01 21 30255320 30255320 G A N6AMT1 Nonsense_Mutation p.Q70* 0.35 TCGA-XF-AAML-01 21 30419563 30419563 G C USP16 Missense_Mutation p.E644D 0.20 deleterious(0) probably_damaging(0.983) TCGA-XF-AAML-01 21 33684256 33684256 C T MRAP Silent p.S156S 0.15 TCGA-XF-AAML-01 21 34634933 34634933 C G IFNAR2 Intron 0.40 TCGA-XF-AAML-01 21 43541290 43541290 G A UMODL1 Missense_Mutation p.G1056E 0.29 deleterious(0.03) probably_damaging(0.969) TCGA-XF-AAML-01 21 47685907 47685907 T C MCM3AP Missense_Mutation p.K988R 0.20 tolerated(0.14) probably_damaging(0.989) TCGA-XF-AAML-01 21 47716100 47716100 C T YBEY Missense_Mutation p.H122Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 22 16279200 16279200 A G POTEH Silent p.Y341Y 0.07 TCGA-XF-AAML-01 22 20760784 20760784 C G ZNF74 Silent p.L487L 0.22 TCGA-XF-AAML-01 22 22065114 22065114 A C YPEL1 5'UTR 0.41 TCGA-XF-AAML-01 22 22316834 22316834 C T TOP3B Missense_Mutation p.E498K 0.27 deleterious(0) possibly_damaging(0.746) TCGA-XF-AAML-01 22 31337500 31337500 A G MORC2 Silent p.Y186Y 0.54 TCGA-XF-AAML-01 22 32756127 32756127 G C RFPL3S 3'UTR 0.38 TCGA-XF-AAML-01 22 38882383 38882383 C T DDX17 Missense_Mutation p.E585K 0.32 deleterious_low_confidence(0.05) benign(0.39) TCGA-XF-AAML-01 22 38891017 38891017 C G DDX17 Silent p.L305L 0.39 TCGA-XF-AAML-01 22 38891927 38891927 G A DDX17 Missense_Mutation p.P252S 0.27 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 22 38891939 38891939 G T DDX17 Missense_Mutation p.L248I 0.26 deleterious(0) probably_damaging(0.947) TCGA-XF-AAML-01 22 39441023 39441023 G C APOBEC3F Missense_Mutation p.K83N 0.33 deleterious(0.01) possibly_damaging(0.542) TCGA-XF-AAML-01 22 45745647 45745647 C A SMC1B Nonsense_Mutation p.E1153* 0.28 TCGA-XF-AAML-01 22 45789669 45789669 C A SMC1B Nonsense_Mutation p.E464* 0.27 TCGA-XF-AAML-01 22 46654087 46654087 C T PKDREJ Silent p.L1711L 0.23 TCGA-XF-AAML-01 22 50718922 50718922 G A PLXNB2 Missense_Mutation p.R1391C 0.18 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 2 10712268 10712268 C G NOL10 Missense_Mutation p.E666Q 0.39 deleterious(0) probably_damaging(0.984) TCGA-XF-AAML-01 2 108627312 108627312 C T SLC5A7 Nonsense_Mutation p.Q580* 0.11 TCGA-XF-AAML-01 2 109393588 109393588 G A RANBP2 Missense_Mutation p.E2834K 0.13 tolerated(0.29) probably_damaging(0.954) TCGA-XF-AAML-01 2 124783274 124783274 C G CNTNAP5 Missense_Mutation p.S16C 0.12 tolerated(0.06) possibly_damaging(0.642) TCGA-XF-AAML-01 2 128712664 128712664 G A SAP130 Missense_Mutation p.S799L 0.23 tolerated_low_confidence(0.3) unknown(0) TCGA-XF-AAML-01 2 128939864 128939864 G A UGGT1 Missense_Mutation p.S1415N 0.10 deleterious(0) probably_damaging(0.945) TCGA-XF-AAML-01 2 155555455 155555455 G A KCNJ3 Silent p.Q56Q 0.08 TCGA-XF-AAML-01 2 157425438 157425438 G C GPD2 Missense_Mutation p.D423H 0.41 tolerated(0.59) benign(0.002) TCGA-XF-AAML-01 2 158272540 158272540 C G CYTIP Missense_Mutation p.E243D 0.21 tolerated(0.27) benign(0.193) TCGA-XF-AAML-01 2 160697359 160697359 C T LY75-CD302 Missense_Mutation p.E1130K 0.11 tolerated(0.08) probably_damaging(0.953) TCGA-XF-AAML-01 2 166221755 166221755 G A SCN2A Missense_Mutation p.E1168K 0.11 tolerated(0.08) benign(0.012) TCGA-XF-AAML-01 2 169757838 169757838 C T G6PC2 5'UTR 0.20 TCGA-XF-AAML-01 2 170070176 170070176 G C LRP2 Missense_Mutation p.H2011D 0.20 benign(0.063) TCGA-XF-AAML-01 2 170070197 170070197 G T LRP2 Missense_Mutation p.L2004M 0.20 probably_damaging(0.993) TCGA-XF-AAML-01 2 176983681 176983681 G C HOXD10 Splice_Site p.X249_splice 0.48 TCGA-XF-AAML-01 2 178682621 178682621 C T PDE11A Silent p.G536G 0.29 TCGA-XF-AAML-01 2 179464137 179464137 C G TTN Missense_Mutation p.E18795Q 0.16 TCGA-XF-AAML-01 2 179482768 179482768 C T TTN Silent p.V15770V 0.12 TCGA-XF-AAML-01 2 179574561 179574561 G A TTN Silent p.F9495F 0.20 TCGA-XF-AAML-01 2 179632801 179632801 G C TTN Missense_Mutation p.S3082C 0.15 TCGA-XF-AAML-01 2 196709745 196709745 C T DNAH7 Missense_Mutation p.D2976N 0.41 deleterious(0) probably_damaging(0.99) TCGA-XF-AAML-01 2 20174248 20174248 C T WDR35 Missense_Mutation p.M239I 0.15 deleterious(0.01) benign(0.142) TCGA-XF-AAML-01 2 207041986 207041986 G C GPR1 5'UTR 0.21 TCGA-XF-AAML-01 2 216211607 216211607 G A ATIC Silent p.V482V 0.12 TCGA-XF-AAML-01 2 219423230 219423230 C G USP37 Missense_Mutation p.R49S 0.25 deleterious(0.01) benign(0.099) TCGA-XF-AAML-01 2 224824558 224824558 G A MRPL44 Missense_Mutation p.E163K 0.12 tolerated(0.23) benign(0.219) TCGA-XF-AAML-01 2 242577126 242577126 G A ATG4B 5'UTR 0.15 TCGA-XF-AAML-01 2 32339806 32339806 C T SPAST Missense_Mutation p.S261L 0.20 tolerated(0.05) possibly_damaging(0.584) TCGA-XF-AAML-01 2 37454970 37454970 C T CEBPZ Missense_Mutation p.E456K 0.15 tolerated(0.37) benign(0.044) TCGA-XF-AAML-01 2 37455797 37455797 C G CEBPZ Missense_Mutation p.G180A 0.21 deleterious(0) probably_damaging(0.936) TCGA-XF-AAML-01 2 47397880 47397880 C G CALM2 Missense_Mutation p.Q9H 0.15 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-XF-AAML-01 2 54482251 54482251 G A TSPYL6 Silent p.V346V 0.28 TCGA-XF-AAML-01 2 55563951 55563951 C G CCDC88A Missense_Mutation p.E508Q 0.31 deleterious(0.01) benign(0.077) TCGA-XF-AAML-01 2 56145384 56145384 C G EFEMP1 Missense_Mutation p.E34Q 0.12 tolerated(0.1) probably_damaging(0.919) TCGA-XF-AAML-01 2 61575281 61575281 C T USP34 Missense_Mutation p.G670E 0.21 tolerated_low_confidence(0.27) probably_damaging(0.996) TCGA-XF-AAML-01 2 68692301 68692301 C T FBXO48 5'UTR 0.22 TCGA-XF-AAML-01 2 74757176 74757176 C T HTRA2 Missense_Mutation p.R15W 0.21 tolerated_low_confidence(0.11) benign(0) TCGA-XF-AAML-01 2 80085164 80085164 C T CTNNA2 Silent p.S108S 0.07 TCGA-XF-AAML-01 2 80530973 80530973 G C LRRTM1 5'UTR 0.42 TCGA-XF-AAML-01 2 85828160 85828160 C T TMEM150A Missense_Mutation p.D62N 0.14 tolerated(1) probably_damaging(0.988) TCGA-XF-AAML-01 2 86270197 86270197 C T POLR1A Missense_Mutation p.R1086K 0.20 tolerated(0.49) benign(0.001) TCGA-XF-AAML-01 2 86669145 86669145 G A KDM3A 5'UTR 0.13 TCGA-XF-AAML-01 2 90139310 90139310 C A IGKV1D-16 Silent p.T27T 0.69 TCGA-XF-AAML-01 2 98804563 98804563 C A VWA3B Silent p.I479I 0.18 TCGA-XF-AAML-01 3 105264045 105264045 G C ALCAM Intron 0.25 TCGA-XF-AAML-01 3 109049242 109049242 C T DPPA4 Intron 0.27 TCGA-XF-AAML-01 3 113524291 113524291 G A ATP6V1A Silent p.Q560Q 0.21 TCGA-XF-AAML-01 3 113684176 113684176 C T KIAA1407 Nonsense_Mutation p.W879* 0.20 TCGA-XF-AAML-01 3 122289466 122289466 C T DTX3L Silent p.V700V 0.28 TCGA-XF-AAML-01 3 124458996 124458996 G T UMPS Nonsense_Mutation p.E370* 0.18 TCGA-XF-AAML-01 3 12950806 12950806 C T IQSEC1 Missense_Mutation p.E863K 0.29 tolerated(0.05) possibly_damaging(0.751) TCGA-XF-AAML-01 3 130452885 130452885 T C PIK3R4 Missense_Mutation p.I319M 0.41 deleterious(0.03) benign(0.176) TCGA-XF-AAML-01 3 140122581 140122581 G A CLSTN2 Missense_Mutation p.E115K 0.23 deleterious(0) probably_damaging(0.943) TCGA-XF-AAML-01 3 157154624 157154624 C T PTX3 5'UTR 0.15 TCGA-XF-AAML-01 3 168861552 168861552 G C MECOM Silent p.L24L 0.20 TCGA-XF-AAML-01 3 17208349 17208349 G A TBC1D5 Silent p.I690I 0.12 TCGA-XF-AAML-01 3 174814798 174814798 C G NAALADL2 Missense_Mutation p.Q88E 0.28 tolerated(0.06) benign(0.288) TCGA-XF-AAML-01 3 174815006 174815006 C T NAALADL2 Missense_Mutation p.S157L 0.26 deleterious(0.02) benign(0.103) TCGA-XF-AAML-01 3 174815023 174815023 C T NAALADL2 Nonsense_Mutation p.Q163* 0.22 TCGA-XF-AAML-01 3 182575712 182575712 G A ATP11B Missense_Mutation p.E300K 0.30 tolerated(0.98) benign(0.219) TCGA-XF-AAML-01 3 182583247 182583247 G A ATP11B Missense_Mutation p.E402K 0.20 deleterious(0.03) possibly_damaging(0.835) TCGA-XF-AAML-01 3 182631724 182631725 TC - ATP11B Frame_Shift_Del p.S1132Cfs*13 0.17 TCGA-XF-AAML-01 3 183435476 183435476 C G YEATS2 Missense_Mutation p.I46M 0.26 deleterious(0) probably_damaging(0.986) TCGA-XF-AAML-01 3 183703253 183703253 G A ABCC5 Intron 0.12 TCGA-XF-AAML-01 3 183995111 183995111 G A ECE2 Missense_Mutation p.R230Q 0.25 tolerated(0.3) benign(0.295) TCGA-XF-AAML-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.25 deleterious_low_confidence(0.02) benign(0.001) TCGA-XF-AAML-01 3 185181410 185181410 G A MAP3K13 Missense_Mutation p.D451N 0.12 deleterious(0) possibly_damaging(0.71) TCGA-XF-AAML-01 3 189604240 189604240 G A TP63 Missense_Mutation p.M469I 0.20 tolerated(0.44) possibly_damaging(0.775) TCGA-XF-AAML-01 3 19975188 19975188 C T EFHB Missense_Mutation p.R108K 0.26 tolerated_low_confidence(0.06) benign(0.167) TCGA-XF-AAML-01 3 20082251 20082251 C T KAT2B Silent p.L94L 0.32 TCGA-XF-AAML-01 3 27758424 27758424 T C EOMES 3'UTR 0.67 TCGA-XF-AAML-01 3 33425582 33425582 C T FBXL2 Silent p.C351C 0.41 TCGA-XF-AAML-01 3 38591690 38591690 G C SCN5A 3'UTR 0.33 TCGA-XF-AAML-01 3 40529054 40529054 G C ZNF619 Missense_Mutation p.K391N 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-XF-AAML-01 3 47098670 47098670 G C SETD2 Missense_Mutation p.P2202A 0.24 tolerated(0.55) benign(0.001) TCGA-XF-AAML-01 3 47158126 47158126 G C SETD2 Missense_Mutation p.L1525V 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-XF-AAML-01 3 48282641 48282641 C G ZNF589 5'UTR 0.22 TCGA-XF-AAML-01 3 48683024 48683024 G T CELSR3 Missense_Mutation p.S2550Y 0.28 deleterious(0) probably_damaging(0.987) TCGA-XF-AAML-01 3 48699138 48699138 C T CELSR3 Silent p.A310A 0.24 TCGA-XF-AAML-01 3 50403180 50403180 C T CACNA2D2 Intron 0.31 TCGA-XF-AAML-01 3 50403215 50403215 C T CACNA2D2 Intron 0.29 TCGA-XF-AAML-01 3 53221415 53221415 A G PRKCD Missense_Mutation p.Y471C 0.19 deleterious(0) probably_damaging(0.922) TCGA-XF-AAML-01 3 57272079 57272079 C T APPL1 Missense_Mutation p.P74S 0.09 deleterious(0.02) possibly_damaging(0.81) TCGA-XF-AAML-01 3 63968618 63968618 G C ATXN7 Missense_Mutation p.R339T 0.27 deleterious(0) probably_damaging(0.967) TCGA-XF-AAML-01 3 98189349 98189349 C G OR5K1 3'UTR 0.29 TCGA-XF-AAML-01 4 103971478 103971478 G C SLC9B2 Missense_Mutation p.I168M 0.38 deleterious(0) probably_damaging(0.991) TCGA-XF-AAML-01 4 108955474 108955474 C T HADH Silent p.F319F 0.09 TCGA-XF-AAML-01 4 111430914 111430914 C G ENPEP Nonsense_Mutation p.S382* 0.24 TCGA-XF-AAML-01 4 118005596 118005596 G A TRAM1L1 Silent p.L318L 0.19 TCGA-XF-AAML-01 4 123159361 123159361 C T KIAA1109 Missense_Mutation p.S1230F 0.41 possibly_damaging(0.794) TCGA-XF-AAML-01 4 128703790 128703790 G A HSPA4L Missense_Mutation p.E29K 0.26 deleterious(0) possibly_damaging(0.697) TCGA-XF-AAML-01 4 128807777 128807777 G C PLK4 Missense_Mutation p.E418Q 0.22 tolerated(0.11) benign(0.342) TCGA-XF-AAML-01 4 129127589 129127589 G C LARP1B Silent p.G772G 0.35 TCGA-XF-AAML-01 4 13601610 13601610 A G BOD1L1 Missense_Mutation p.M2305T 0.50 probably_damaging(0.94) TCGA-XF-AAML-01 4 1389137 1389137 G A CRIPAK Missense_Mutation p.A280T 0.13 tolerated(0.14) probably_damaging(0.982) TCGA-XF-AAML-01 4 159092352 159092352 G A FAM198B Missense_Mutation p.S59F 0.24 tolerated(0.11) possibly_damaging(0.683) TCGA-XF-AAML-01 4 169336623 169336623 G A DDX60L Missense_Mutation p.S972L 0.11 deleterious(0) possibly_damaging(0.78) TCGA-XF-AAML-01 4 170038801 170038801 C T SH3RF1 Silent p.G550G 0.19 TCGA-XF-AAML-01 4 17503419 17503419 T C QDPR Missense_Mutation p.H120R 0.33 tolerated(0.35) possibly_damaging(0.69) TCGA-XF-AAML-01 4 184612514 184612514 G C TRAPPC11 Missense_Mutation p.E647Q 0.14 tolerated(0.47) benign(0.02) TCGA-XF-AAML-01 4 187539060 187539060 C T FAT1 Missense_Mutation p.E2894K 0.50 possibly_damaging(0.731) TCGA-XF-AAML-01 4 187557292 187557292 G A FAT1 Missense_Mutation p.S1357L 0.19 benign(0.001) TCGA-XF-AAML-01 4 23814651 23814651 G A PPARGC1A Missense_Mutation p.R631W 0.25 deleterious(0) unknown(0) TCGA-XF-AAML-01 4 26483213 26483213 C T CCKAR 3'UTR 0.11 TCGA-XF-AAML-01 4 2744229 2744229 C T TNIP2 Missense_Mutation p.A349T 0.23 tolerated(0.29) benign(0.005) TCGA-XF-AAML-01 4 3148631 3148631 C G HTT Nonsense_Mutation p.S1084* 0.07 TCGA-XF-AAML-01 4 40123713 40123713 G A N4BP2 Missense_Mutation p.E1328K 0.21 tolerated(0.13) possibly_damaging(0.632) TCGA-XF-AAML-01 4 40245384 40245384 C G RHOH Missense_Mutation p.H126Q 0.26 tolerated(0.67) benign(0.383) TCGA-XF-AAML-01 4 435694 435694 T C ZNF721 Silent p.V854V 0.50 TCGA-XF-AAML-01 4 46314619 46314619 G C GABRA2 Missense_Mutation p.P124A 0.24 deleterious(0) probably_damaging(0.994) TCGA-XF-AAML-01 4 47886423 47886423 G A NFXL1 Missense_Mutation p.S619F 0.32 deleterious(0.04) benign(0.089) TCGA-XF-AAML-01 4 52752757 52752757 G T DCUN1D4 Nonsense_Mutation p.E123* 0.20 TCGA-XF-AAML-01 4 52938212 52938212 G C SPATA18 Missense_Mutation p.Q216H 0.34 deleterious(0.01) benign(0.264) TCGA-XF-AAML-01 4 55139874 55139874 G A PDGFRA Missense_Mutation p.R512Q 0.33 tolerated(0.49) probably_damaging(0.999) TCGA-XF-AAML-01 4 57840102 57840102 A G NOA1 Missense_Mutation p.S411P 0.06 deleterious(0.04) possibly_damaging(0.555) TCGA-XF-AAML-01 4 652774 652774 G A PDE6B Missense_Mutation p.D479N 0.22 tolerated(0.12) benign(0.021) TCGA-XF-AAML-01 4 69332421 69332421 G C TMPRSS11E Missense_Mutation p.R70T 0.10 tolerated(0.47) benign(0.015) TCGA-XF-AAML-01 4 71895083 71895083 G C DCK Missense_Mutation p.L257F 0.33 tolerated(0.21) possibly_damaging(0.606) TCGA-XF-AAML-01 4 7811407 7811407 G A AFAP1 Silent p.L330L 0.26 TCGA-XF-AAML-01 4 79516982 79516982 C T ANXA3 Missense_Mutation p.T192M 0.18 deleterious(0) probably_damaging(0.992) TCGA-XF-AAML-01 4 88295955 88295955 T C HSD17B11 Missense_Mutation p.I116V 0.22 deleterious(0.04) benign(0.196) TCGA-XF-AAML-01 4 9783893 9783893 C T DRD5 Silent p.I80I 0.13 TCGA-XF-AAML-01 5 110782428 110782428 G A CAMK4 Silent p.E168E 0.23 TCGA-XF-AAML-01 5 121780327 121780327 G A SNCAIP Missense_Mutation p.E498K 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-XF-AAML-01 5 127622496 127622507 CCCCTAGATTCA - FBN2 In_Frame_Del p.E2306_G2309del 0.42 TCGA-XF-AAML-01 5 131676310 131676310 G A SLC22A4 Silent p.L499L 0.27 TCGA-XF-AAML-01 5 137223031 137223031 G A MYOT Missense_Mutation p.R485H 0.15 tolerated(0.54) probably_damaging(0.912) TCGA-XF-AAML-01 5 138760771 138760771 C T DNAJC18 Missense_Mutation p.D198N 0.26 tolerated(0.35) possibly_damaging(0.869) TCGA-XF-AAML-01 5 139751896 139751896 G C SLC4A9 Missense_Mutation p.D938H 0.60 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 5 140188639 140188639 C T PCDHA4 Missense_Mutation p.R623C 0.27 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-XF-AAML-01 5 140236146 140236146 C G PCDHA10 Silent p.L171L 0.44 TCGA-XF-AAML-01 5 140516590 140516590 C A PCDHB5 Missense_Mutation p.A525E 0.43 tolerated_low_confidence(0.11) benign(0.021) TCGA-XF-AAML-01 5 140558161 140558161 C T PCDHB8 Silent p.L182L 0.04 TCGA-XF-AAML-01 5 140751928 140751928 C T PCDHGB3 Missense_Mutation p.A656V 0.21 deleterious(0.02) probably_damaging(0.975) TCGA-XF-AAML-01 5 140782948 140782948 C T PCDHGA9 Silent p.N143N 0.24 TCGA-XF-AAML-01 5 140855904 140855904 G A PCDHGC3 Missense_Mutation p.R74Q 0.27 tolerated(0.25) benign(0.121) TCGA-XF-AAML-01 5 14693130 14693130 C T FAM105B Silent p.V344V 0.16 TCGA-XF-AAML-01 5 148392270 148392270 G C SH3TC2 Missense_Mutation p.I1027M 0.25 deleterious(0) possibly_damaging(0.862) TCGA-XF-AAML-01 5 1589480 1589480 C T SDHAP3 Intron 0.22 TCGA-XF-AAML-01 5 16675230 16675230 G A MYO10 Nonsense_Mutation p.Q1566* 0.09 TCGA-XF-AAML-01 5 167181998 167181998 G A TENM2 Intron 0.24 TCGA-XF-AAML-01 5 172660215 172660215 G A NKX2-5 Intron 0.25 TCGA-XF-AAML-01 5 172755264 172755264 C A STC2 5'UTR 0.27 TCGA-XF-AAML-01 5 176520308 176520308 C T FGFR4 Silent p.L409L 0.23 TCGA-XF-AAML-01 5 177715338 177715338 C T COL23A1 Missense_Mutation p.R143Q 0.21 tolerated(0.31) unknown(0) TCGA-XF-AAML-01 5 178139830 178139830 C G ZNF354A Missense_Mutation p.R350T 0.26 deleterious(0.02) benign(0.258) TCGA-XF-AAML-01 5 180432734 180432734 C T BTNL3 Silent p.F421F 0.21 TCGA-XF-AAML-01 5 32271949 32271949 C G MTMR12 Missense_Mutation p.Q116H 0.12 tolerated(0.05) benign(0.049) TCGA-XF-AAML-01 5 40835290 40835290 C A RPL37 5'UTR 0.70 TCGA-XF-AAML-01 5 43280427 43280427 C T NIM1K Nonsense_Mutation p.R303* 0.09 TCGA-XF-AAML-01 5 63256414 63256414 G A HTR1A Missense_Mutation p.P378L 0.39 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 5 63871693 63871693 C G RGS7BP Missense_Mutation p.S142C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-XF-AAML-01 5 65008864 65008864 A G SGTB Missense_Mutation p.F43S 0.43 deleterious(0.02) probably_damaging(0.964) TCGA-XF-AAML-01 5 69372421 69372421 G C SMN2 Intron 0.18 TCGA-XF-AAML-01 5 83476289 83476289 C T EDIL3 Missense_Mutation p.E93K 0.32 tolerated(0.41) possibly_damaging(0.566) TCGA-XF-AAML-01 5 90672537 90672537 C T ARRDC3 Nonsense_Mutation p.W137* 0.28 TCGA-XF-AAML-01 5 94728598 94728598 G C FAM81B Missense_Mutation p.K75N 0.31 tolerated_low_confidence(0.09) benign(0.048) TCGA-XF-AAML-01 5 96518924 96518924 C T CTD-2215E18.1 Missense_Mutation p.S82F 0.29 possibly_damaging(0.692) TCGA-XF-AAML-01 6 100390866 100390866 C T MCHR2 Silent p.E182E 0.27 TCGA-XF-AAML-01 6 100957932 100957932 C T ASCC3 Missense_Mutation p.E2113K 0.26 deleterious(0) probably_damaging(0.998) TCGA-XF-AAML-01 6 101075843 101075843 G T ASCC3 Missense_Mutation p.L1466I 0.28 tolerated(0.07) probably_damaging(0.919) TCGA-XF-AAML-01 6 10404773 10404773 G C TFAP2A Silent p.L244L 0.19 TCGA-XF-AAML-01 6 111694373 111694373 C G REV3L Missense_Mutation p.E1729Q 0.22 deleterious(0.01) possibly_damaging(0.588) TCGA-XF-AAML-01 6 111694596 111694596 C G REV3L Missense_Mutation p.Q1654H 0.21 deleterious(0) probably_damaging(0.998) TCGA-XF-AAML-01 6 111694798 111694798 C A REV3L Missense_Mutation p.R1587I 0.20 deleterious(0) probably_damaging(0.999) TCGA-XF-AAML-01 6 114264556 114264556 C T HDAC2 Missense_Mutation p.R446K 0.19 tolerated(0.44) benign(0.002) TCGA-XF-AAML-01 6 11778916 11778917 TG - ADTRP Frame_Shift_Del p.Q26Gfs*24 0.41 TCGA-XF-AAML-01 6 119252744 119252744 C G MCM9 Missense_Mutation p.E49Q 0.24 deleterious(0) probably_damaging(0.991) TCGA-XF-AAML-01 6 134349751 134349751 G A SLC2A12 Silent p.L404L 0.21 TCGA-XF-AAML-01 6 134350043 134350043 G T SLC2A12 Nonsense_Mutation p.S307* 0.25 TCGA-XF-AAML-01 6 134350196 134350196 G A SLC2A12 Missense_Mutation p.S256F 0.31 tolerated(0.08) probably_damaging(0.996) TCGA-XF-AAML-01 6 152779954 152779954 C A SYNE1 Nonsense_Mutation p.E836* 0.19 TCGA-XF-AAML-01 6 155635473 155635473 C T TFB1M Silent p.A30A 0.27 TCGA-XF-AAML-01 6 161536266 161536266 C T MAP3K4 Missense_Mutation p.H1580Y 0.43 deleterious(0.04) probably_damaging(0.986) TCGA-XF-AAML-01 6 166833425 166833425 C G RPS6KA2 Missense_Mutation p.D597H 0.14 deleterious(0.02) possibly_damaging(0.747) TCGA-XF-AAML-01 6 24569158 24569158 C G KIAA0319 Splice_Site p.X664_splice 0.45 TCGA-XF-AAML-01 6 26443838 26443838 C T BTN3A3 Silent p.L12L 0.09 TCGA-XF-AAML-01 6 2890404 2890404 G A SERPINB9 Missense_Mutation p.S375L 0.16 deleterious(0.01) probably_damaging(0.916) TCGA-XF-AAML-01 6 29577037 29577037 G A GABBR1 Silent p.L610L 0.13 TCGA-XF-AAML-01 6 31080064 31080064 G C C6orf15 Silent p.L24L 0.18 TCGA-XF-AAML-01 6 31106440 31106440 G A PSORS1C1 Silent p.Q17Q 0.10 TCGA-XF-AAML-01 6 31106492 31106492 G A PSORS1C1 Missense_Mutation p.E35K 0.13 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-XF-AAML-01 6 31743147 31743147 G A VWA7 Silent p.L191L 0.32 TCGA-XF-AAML-01 6 32029492 32029492 C G TNXB Missense_Mutation p.E2392Q 0.20 benign(0.033) TCGA-XF-AAML-01 6 33231817 33231817 C T VPS52 Missense_Mutation p.E530K 0.15 deleterious(0.02) benign(0.196) TCGA-XF-AAML-01 6 35051238 35051238 C T ANKS1A Silent p.S984S 0.18 TCGA-XF-AAML-01 6 35392262 35392262 G A PPARD Missense_Mutation p.E262K 0.13 deleterious(0) possibly_damaging(0.852) TCGA-XF-AAML-01 6 38840895 38840895 C T DNAH8 Missense_Mutation p.S2267F 0.22 probably_damaging(0.987) TCGA-XF-AAML-01 6 38877315 38877315 C A DNAH8 Missense_Mutation p.R2962S 0.05 probably_damaging(0.997) TCGA-XF-AAML-01 6 41035112 41035112 C G OARD1 Missense_Mutation p.E141Q 0.38 tolerated(0.68) benign(0.001) TCGA-XF-AAML-01 6 42832607 42832607 C A GLTSCR1L Missense_Mutation p.S888Y 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.739) TCGA-XF-AAML-01 6 42986231 42986231 G A KLHDC3 Missense_Mutation p.E224K 0.21 tolerated(0.92) benign(0.016) TCGA-XF-AAML-01 6 42987036 42987036 G A KLHDC3 Silent p.L338L 0.14 TCGA-XF-AAML-01 6 42987097 42987097 G T KLHDC3 Missense_Mutation p.D359Y 0.13 tolerated(0.07) benign(0.429) TCGA-XF-AAML-01 6 43096795 43096795 G A PTK7 Missense_Mutation p.E62K 0.53 deleterious(0.03) benign(0.155) TCGA-XF-AAML-01 6 43415673 43415673 C G ABCC10 Silent p.L1319L 0.39 TCGA-XF-AAML-01 6 46129427 46129427 G A ENPP5 Missense_Mutation p.P357L 0.17 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 6 46847632 46847632 G A GPR116 Missense_Mutation p.S320L 0.25 tolerated(0.25) benign(0.053) TCGA-XF-AAML-01 6 46977491 46977491 C T GPR110 Silent p.T560T 0.22 TCGA-XF-AAML-01 6 53785424 53785424 G A LRRC1 Silent p.E427E 0.09 TCGA-XF-AAML-01 6 71011709 71011709 C T COL9A1 Missense_Mutation p.R28H 0.36 unknown(0) TCGA-XF-AAML-01 6 74477934 74477934 C T CD109 Nonsense_Mutation p.Q552* 0.12 TCGA-XF-AAML-01 6 7580473 7580473 G A DSP Silent p.K1350K 0.10 TCGA-XF-AAML-01 6 7581193 7581193 G C DSP Missense_Mutation p.K1590N 0.25 benign(0.135) TCGA-XF-AAML-01 6 90383913 90383913 C T MDN1 Missense_Mutation p.R4386K 0.10 benign(0.001) TCGA-XF-AAML-01 6 99347212 99347212 G A FBXL4 Nonsense_Mutation p.Q417* 0.14 TCGA-XF-AAML-01 7 100345213 100345213 G T ZAN Silent p.G324G 0.12 TCGA-XF-AAML-01 7 102614165 102614165 C T FBXL13 Intron 0.21 TCGA-XF-AAML-01 7 141952369 141952369 C T PRSS58 Missense_Mutation p.D167N 0.21 tolerated(1) benign(0.003) TCGA-XF-AAML-01 7 150417424 150417424 G A GIMAP1 Missense_Mutation p.G111E 0.24 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 7 150939629 150939629 C T SMARCD3 Missense_Mutation p.E173K 0.25 tolerated(0.05) benign(0.011) TCGA-XF-AAML-01 7 150939849 150939849 C T SMARCD3 Silent p.R138R 0.26 TCGA-XF-AAML-01 7 18066662 18066662 C T PRPS1L1 Silent p.L248L 0.20 TCGA-XF-AAML-01 7 2317771 2317771 G A SNX8 Silent p.L88L 0.18 TCGA-XF-AAML-01 7 23309684 23309684 T C GPNMB Missense_Mutation p.L452P 0.46 deleterious(0) probably_damaging(0.986) TCGA-XF-AAML-01 7 24881989 24881989 G C OSBPL3 Missense_Mutation p.S437C 0.19 deleterious(0) probably_damaging(0.989) TCGA-XF-AAML-01 7 24892222 24892222 G T OSBPL3 Silent p.I353I 0.24 TCGA-XF-AAML-01 7 44151553 44151553 C T AEBP1 Silent p.R647R 0.25 TCGA-XF-AAML-01 7 44556380 44556380 C G NPC1L1 Missense_Mutation p.M1174I 0.21 deleterious(0) probably_damaging(0.977) TCGA-XF-AAML-01 7 45141460 45141460 T A TBRG4 Missense_Mutation p.S511C 0.32 tolerated(0.16) benign(0.033) TCGA-XF-AAML-01 7 4900356 4900356 G C PAPOLB Silent p.L361L 0.26 TCGA-XF-AAML-01 7 56022930 56022930 G C MRPS17 3'UTR 0.23 TCGA-XF-AAML-01 7 86547786 86547786 G A KIAA1324L Missense_Mutation p.S522L 0.28 deleterious(0.04) benign(0.021) TCGA-XF-AAML-01 8 100974962 100974962 G C RGS22 Missense_Mutation p.S1248C 0.15 deleterious(0.04) benign(0.115) TCGA-XF-AAML-01 8 101206369 101206369 G C SPAG1 Silent p.L323L 0.38 TCGA-XF-AAML-01 8 103220437 103220437 C T RRM2B Missense_Mutation p.R327Q 0.18 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-XF-AAML-01 8 104394980 104394980 A C CTHRC1 3'UTR 0.16 TCGA-XF-AAML-01 8 106815426 106815426 G A ZFPM2 Missense_Mutation p.R1039Q 0.23 tolerated(0.24) probably_damaging(0.996) TCGA-XF-AAML-01 8 113988242 113988242 C T CSMD3 Missense_Mutation p.R389K 0.32 tolerated(0.89) benign(0) TCGA-XF-AAML-01 8 11414244 11414244 G C BLK Missense_Mutation p.E284Q 0.29 deleterious(0) probably_damaging(0.978) TCGA-XF-AAML-01 8 114448979 114448979 C T CSMD3 Missense_Mutation p.M35I 0.37 tolerated_low_confidence(0.74) benign(0) TCGA-XF-AAML-01 8 131172191 131172191 C G ASAP1 Missense_Mutation p.G310A 0.14 tolerated(1) benign(0.003) TCGA-XF-AAML-01 8 131916131 131916131 C A ADCY8 Missense_Mutation p.D600Y 0.15 deleterious(0.02) possibly_damaging(0.804) TCGA-XF-AAML-01 8 133014902 133014902 G A EFR3A Silent p.E753E 0.19 TCGA-XF-AAML-01 8 133984092 133984092 G C TG Missense_Mutation p.G2010A 0.06 tolerated(0.05) possibly_damaging(0.904) TCGA-XF-AAML-01 8 146067297 146067297 C T ZNF7 Nonsense_Mutation p.Q269* 0.45 TCGA-XF-AAML-01 8 22006252 22006252 G C LGI3 Silent p.L356L 0.31 TCGA-XF-AAML-01 8 22107730 22107730 C A POLR3D Missense_Mutation p.S355Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-XF-AAML-01 8 38677148 38677148 C G TACC1 Missense_Mutation p.S129C 0.39 deleterious(0.03) benign(0.021) TCGA-XF-AAML-01 8 38677964 38677964 C G TACC1 Missense_Mutation p.S401C 0.43 deleterious(0.02) benign(0.079) TCGA-XF-AAML-01 8 41791111 41791111 G C KAT6A Missense_Mutation p.Q1543E 0.16 unknown(0) TCGA-XF-AAML-01 8 42045002 42045002 C A PLAT Missense_Mutation p.W151C 0.11 deleterious(0) probably_damaging(1) TCGA-XF-AAML-01 8 48866215 48866215 G T PRKDC Nonsense_Mutation p.S229* 0.40 TCGA-XF-AAML-01 8 67578989 67578989 C G VCPIP1 Missense_Mutation p.E69Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-XF-AAML-01 8 76456044 76456044 A T HNF4G Splice_Site p.X30_splice 0.54 TCGA-XF-AAML-01 8 8176117 8176117 G A SGK223 Silent p.L1256L 0.19 TCGA-XF-AAML-01 9 101585620 101585620 C G GALNT12 Missense_Mutation p.L152V 0.25 deleterious(0.01) benign(0.361) TCGA-XF-AAML-01 9 101585654 101585654 C T GALNT12 Missense_Mutation p.S163F 0.31 deleterious(0) probably_damaging(0.995) TCGA-XF-AAML-01 9 102768785 102768785 C T ERP44 Intron 0.23 TCGA-XF-AAML-01 9 127618143 127618146 ACCA - WDR38 Frame_Shift_Del p.Q105Gfs*24 0.25 TCGA-XF-AAML-01 9 130476468 130476468 C T PTRH1 Missense_Mutation p.E186K 0.28 tolerated(0.22) possibly_damaging(0.679) TCGA-XF-AAML-01 9 131036167 131036167 C T GOLGA2 Missense_Mutation p.E57K 0.28 tolerated(0.11) benign(0.03) TCGA-XF-AAML-01 9 131036204 131036204 C T GOLGA2 Silent p.A44A 0.14 TCGA-XF-AAML-01 9 131122671 131122671 G A SLC27A4 Silent p.V611V 0.05 TCGA-XF-AAML-01 9 131403068 131403068 G A WDR34 Missense_Mutation p.R113W 0.17 deleterious(0) possibly_damaging(0.582) TCGA-XF-AAML-01 9 135906408 135906408 G C GTF3C5 Missense_Mutation p.E4Q 0.22 tolerated_low_confidence(0.25) unknown(0) TCGA-XF-AAML-01 9 137300832 137300832 C T RXRA Silent p.F159F 0.23 TCGA-XF-AAML-01 9 15486845 15486845 C T PSIP1 Missense_Mutation p.E125K 0.19 tolerated(0.48) benign(0.041) TCGA-XF-AAML-01 9 2119510 2119510 G A SMARCA2 Missense_Mutation p.R1246Q 0.33 benign(0.238) TCGA-XF-AAML-01 9 33053286 33053286 G C SMU1 Missense_Mutation p.I375M 0.12 deleterious(0.03) benign(0.123) TCGA-XF-AAML-01 9 34662681 34662681 T A CCL27 5'UTR 0.25 TCGA-XF-AAML-01 9 35236516 35236516 G A UNC13B Missense_Mutation p.G68E 0.20 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-XF-AAML-01 9 35606896 35606896 C T TESK1 Silent p.V151V 0.18 TCGA-XF-AAML-01 9 37735690 37735690 G A FRMPD1 Missense_Mutation p.E454K 0.17 deleterious(0) probably_damaging(0.994) TCGA-XF-AAML-01 9 6330294 6330294 C A TPD52L3 3'UTR 0.36 TCGA-XF-AAML-01 9 71152281 71152281 C A TMEM252 Missense_Mutation p.G136V 0.37 deleterious(0.02) benign(0.079) TCGA-XF-AAML-01 9 78789981 78789981 G A PCSK5 Silent p.V612V 0.14 TCGA-XF-AAML-01 9 79318702 79318702 G C PRUNE2 Silent p.L2609L 0.16 TCGA-XF-AAML-01 9 88204598 88204598 T C AGTPBP1 Splice_Site p.X817_splice 0.43 TCGA-XF-AAML-01 9 88636878 88636878 G A NAA35 3'UTR 0.17 TCGA-XF-AAML-01 9 91926154 91926154 C G CKS2 5'UTR 0.38 TCGA-XF-AAML-01 9 91940437 91940437 C T SECISBP2 Missense_Mutation p.S93F 0.12 deleterious(0) possibly_damaging(0.853) TCGA-XF-AAML-01 9 991168 991168 C G DMRT3 3'UTR 0.50 TCGA-XF-AAML-01 X 102192682 102192682 G A RAB40AL Missense_Mutation p.E146K 0.80 tolerated(0.31) possibly_damaging(0.698) TCGA-XF-AAML-01 X 102337158 102337158 G A NXF3 Intron 0.78 TCGA-XF-AAML-01 X 118223710 118223710 C T KIAA1210 Splice_Site p.X495_splice 0.88 TCGA-XF-AAML-01 X 135428583 135428583 G A GPR112 Silent p.V906V 0.45 TCGA-XF-AAML-01 X 150869160 150869160 G A PRRG3 Silent p.Q117Q 0.32 TCGA-XF-AAML-01 X 151909155 151909155 A T CSAG1 Nonsense_Mutation p.K62* 0.83 TCGA-XF-AAML-01 X 153247910 153247910 C G TMEM187 Missense_Mutation p.L133V 0.62 tolerated(0.16) probably_damaging(0.997) TCGA-XF-AAML-01 X 3241287 3241287 C G MXRA5 Missense_Mutation p.L813F 0.78 tolerated(0.32) benign(0) TCGA-XF-AAML-01 X 63411643 63411643 G A AMER1 Silent p.F508F 0.38 TCGA-XF-AAML-01 X 69773218 69773218 C T TEX11 Silent p.K794K 0.41 TCGA-XF-AAML-01 X 73041037 73041037 G C XIST RNA 0.69 TCGA-XF-AAMQ-01 10 117061384 117061384 G A ATRNL1 Silent p.A883A 0.09 TCGA-XF-AAMQ-01 10 12391813 12391813 C T CAMK1D 5'UTR 0.44 TCGA-XF-AAMQ-01 10 27536897 27536897 G A RP11-85G18.6 Intron 0.73 TCGA-XF-AAMQ-01 10 33134532 33134532 G A C10ORF68 Silent p.T409T 0.63 TCGA-XF-AAMQ-01 10 43292396 43292396 G A BMS1 Silent p.L568L 0.60 TCGA-XF-AAMQ-01 10 60996287 60996287 G C PHYHIPL Missense_Mutation p.M116I 0.24 tolerated(0.07) probably_damaging(0.95) TCGA-XF-AAMQ-01 10 70332074 70332074 C A TET1 5'UTR 0.55 TCGA-XF-AAMQ-01 10 72192795 72192795 G A NODAL Missense_Mutation p.A314V 0.38 tolerated(0.85) benign(0.055) TCGA-XF-AAMQ-01 10 91061807 91061807 G T IFIT2 5'UTR 0.22 TCGA-XF-AAMQ-01 10 93572922 93572922 C G TNKS2 Missense_Mutation p.L128V 0.20 deleterious(0) probably_damaging(0.932) TCGA-XF-AAMQ-01 10 99258147 99258147 G A MMS19 5'UTR 0.60 TCGA-XF-AAMQ-01 11 107207390 107207390 C T CWF19L2 Missense_Mutation p.C751Y 0.22 deleterious(0) probably_damaging(0.979) TCGA-XF-AAMQ-01 11 108062882 108062882 G C NPAT Missense_Mutation p.L85V 0.05 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMQ-01 11 118461075 118461075 G C ARCN1 Missense_Mutation p.E280Q 0.68 deleterious(0) probably_damaging(0.986) TCGA-XF-AAMQ-01 11 123477374 123477374 G C GRAMD1B Missense_Mutation p.E318Q 0.59 tolerated(0.35) benign(0.115) TCGA-XF-AAMQ-01 11 132399053 132399053 G C OPCML Nonsense_Mutation p.S143* 0.21 TCGA-XF-AAMQ-01 11 14284333 14284333 G A RP11-21L19.1 3'Flank 0.74 TCGA-XF-AAMQ-01 11 2186500 2186500 G A TH Silent p.F463F 0.12 TCGA-XF-AAMQ-01 11 294285 294285 G A ATHL1 Silent p.V609V 0.64 TCGA-XF-AAMQ-01 11 47663976 47663976 G A MTCH2 Silent p.L14L 0.62 TCGA-XF-AAMQ-01 11 55861032 55861032 G T OR8I2 Silent p.V83V 0.08 TCGA-XF-AAMQ-01 11 56058154 56058154 G C OR8H1 Missense_Mutation p.L129V 0.16 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMQ-01 11 56237896 56237896 G A OR5M3 Silent p.F26F 0.18 TCGA-XF-AAMQ-01 11 5878554 5878554 C T OR52E8 Missense_Mutation p.D127N 0.12 deleterious(0) probably_damaging(1) TCGA-XF-AAMQ-01 11 58920551 58920551 T C FAM111A Silent p.H470H 0.12 TCGA-XF-AAMQ-01 11 58979894 58979894 G A MPEG1 Nonsense_Mutation p.R149* 0.27 TCGA-XF-AAMQ-01 11 5905521 5905521 G C OR52E4 5'UTR 0.14 TCGA-XF-AAMQ-01 11 70007395 70007395 C A ANO1 Silent p.V569V 0.93 TCGA-XF-AAMQ-01 11 76507494 76507494 G A TSKU Silent p.L278L 0.15 TCGA-XF-AAMQ-01 12 117909020 117909020 C G KSR2 Missense_Mutation p.Q896H 0.52 tolerated(0.05) benign(0.011) TCGA-XF-AAMQ-01 12 123818691 123818691 T C SBNO1 Missense_Mutation p.D273G 0.22 deleterious(0) possibly_damaging(0.586) TCGA-XF-AAMQ-01 12 21727083 21727083 C G GYS2 Missense_Mutation p.D225H 0.78 deleterious(0.04) probably_damaging(1) TCGA-XF-AAMQ-01 12 250443 250443 C T IQSEC3 Silent p.D715D 0.10 TCGA-XF-AAMQ-01 12 2595329 2595329 C T CACNA1C Silent p.L273L 0.43 TCGA-XF-AAMQ-01 12 26217828 26217828 G C RASSF8 Missense_Mutation p.K167N 0.35 tolerated(0.3) benign(0.025) TCGA-XF-AAMQ-01 12 40677749 40677749 C T LRRK2 Nonsense_Mutation p.R772* 0.20 TCGA-XF-AAMQ-01 12 56492383 56492383 C T ERBB3 Intron 0.28 TCGA-XF-AAMQ-01 12 56492473 56492473 C T ERBB3 Intron 0.20 TCGA-XF-AAMQ-01 12 65078617 65078617 C G RASSF3 Missense_Mutation p.I54M 0.23 deleterious(0) probably_damaging(0.928) TCGA-XF-AAMQ-01 12 79837902 79837902 G T SYT1 Missense_Mutation p.K326N 0.17 deleterious(0) probably_damaging(1) TCGA-XF-AAMQ-01 12 86268089 86268089 C G NTS 5'UTR 0.25 TCGA-XF-AAMQ-01 12 9087791 9087791 G A PHC1 Silent p.E775E 0.22 TCGA-XF-AAMQ-01 12 95228684 95228684 C T MIR492 3'Flank 0.38 TCGA-XF-AAMQ-01 12 95228691 95228691 C T MIR492 3'Flank 0.44 TCGA-XF-AAMQ-01 13 113768192 113768192 G C F7 Missense_Mutation p.Q116H 0.17 deleterious(0.02) probably_damaging(0.981) TCGA-XF-AAMQ-01 13 113834320 113834320 C T PCID2 Silent p.A353A 0.21 TCGA-XF-AAMQ-01 13 114325926 114325926 G A GRK1 Missense_Mutation p.V314I 0.36 tolerated(0.21) benign(0.015) TCGA-XF-AAMQ-01 13 23908850 23908850 G C SACS Silent p.V3055V 0.54 TCGA-XF-AAMQ-01 13 49039376 49039400 AAGCCCTTACAAGTTTCCTAGTTCA - RB1 Frame_Shift_Del p.S788Pfs*14 0.31 TCGA-XF-AAMQ-01 14 20249265 20249265 C T OR4M1 Missense_Mutation p.R262C 0.37 deleterious(0.02) benign(0.066) TCGA-XF-AAMQ-01 14 20404692 20404692 G C OR4K1 Silent p.L289L 0.52 TCGA-XF-AAMQ-01 14 20925201 20925201 C T APEX1 Missense_Mutation p.S164L 0.40 tolerated(0.16) benign(0.084) TCGA-XF-AAMQ-01 14 23282233 23282233 G A SLC7A7 Silent p.L125L 0.33 TCGA-XF-AAMQ-01 14 24109080 24109080 G A DHRS2 Silent p.G132G 0.36 TCGA-XF-AAMQ-01 14 24787768 24787768 C T ADCY4 Missense_Mutation p.E1030K 0.30 deleterious(0) probably_damaging(0.993) TCGA-XF-AAMQ-01 14 30105674 30105674 C G PRKD1 Missense_Mutation p.D338H 0.41 deleterious(0) probably_damaging(0.954) TCGA-XF-AAMQ-01 14 30105701 30105701 C G PRKD1 Splice_Site p.X329_splice 0.34 TCGA-XF-AAMQ-01 14 64421572 64421572 G C SYNE2 Silent p.L242L 0.42 TCGA-XF-AAMQ-01 14 76149969 76149969 C T TTLL5 Missense_Mutation p.S114F 0.35 tolerated(0.18) benign(0.122) TCGA-XF-AAMQ-01 14 91928522 91928522 C G SMEK1 Missense_Mutation p.E666Q 0.47 deleterious(0.02) possibly_damaging(0.584) TCGA-XF-AAMQ-01 14 92150284 92150284 C T CATSPERB Missense_Mutation p.D290N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAMQ-01 15 101718925 101718925 A G CHSY1 Silent p.P359P 0.26 TCGA-XF-AAMQ-01 15 101718926 101718926 G T CHSY1 Missense_Mutation p.P359H 0.26 deleterious(0.05) possibly_damaging(0.838) TCGA-XF-AAMQ-01 15 25496072 25496072 G C SNORD115-44 RNA 0.22 TCGA-XF-AAMQ-01 15 35273481 35273481 C G ZNF770 3'UTR 0.38 TCGA-XF-AAMQ-01 15 43658368 43658368 G A ZSCAN29 Silent p.L388L 0.24 TCGA-XF-AAMQ-01 15 52069163 52069163 A T TMOD2 Silent p.P147P 0.25 TCGA-XF-AAMQ-01 15 52708464 52708464 C G MYO5A Missense_Mutation p.E164Q 0.20 deleterious(0) probably_damaging(0.919) TCGA-XF-AAMQ-01 15 58860912 58860912 C T LIPC Intron 0.18 TCGA-XF-AAMQ-01 15 65239658 65239658 C T ANKDD1A Missense_Mutation p.S399F 0.12 deleterious(0) benign(0.067) TCGA-XF-AAMQ-01 15 74327616 74327616 G C PML Intron 0.48 TCGA-XF-AAMQ-01 15 78882861 78882861 G C CHRNA5 Missense_Mutation p.Q376H 0.21 tolerated(0.28) benign(0.008) TCGA-XF-AAMQ-01 15 85341886 85341886 C G ZNF592 Nonsense_Mutation p.S935* 0.19 TCGA-XF-AAMQ-01 15 90152147 90152147 G C TICRR Missense_Mutation p.E946Q 0.53 tolerated(0.19) benign(0.037) TCGA-XF-AAMQ-01 15 90808942 90808942 G A NGRN 5'UTR 0.32 TCGA-XF-AAMQ-01 16 24801369 24801369 C T TNRC6A Missense_Mutation p.S469L 0.30 tolerated(0.06) benign(0.012) TCGA-XF-AAMQ-01 16 28116007 28116007 C T XPO6 Missense_Mutation p.A936T 0.25 tolerated(0.45) benign(0.005) TCGA-XF-AAMQ-01 16 30097623 30097623 G A TBX6 Missense_Mutation p.L412F 0.50 deleterious_low_confidence(0.01) benign(0.356) TCGA-XF-AAMQ-01 16 30199566 30199566 G A CORO1A Missense_Mutation p.R354Q 0.30 deleterious(0) possibly_damaging(0.481) TCGA-XF-AAMQ-01 16 30537307 30537307 C A ZNF768 Nonsense_Mutation p.E52* 0.26 TCGA-XF-AAMQ-01 16 30537672 30537672 C G ZNF768 Missense_Mutation p.M21I 0.32 tolerated_low_confidence(0.13) benign(0) TCGA-XF-AAMQ-01 16 31102566 31102566 C T VKORC1 Silent p.V127V 0.56 TCGA-XF-AAMQ-01 16 56666554 56666554 G A MT1M 5'UTR 0.23 TCGA-XF-AAMQ-01 16 67860138 67860138 G A TSNAXIP1 Missense_Mutation p.E356K 0.51 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMQ-01 16 67915918 67915918 G C EDC4 Missense_Mutation p.Q1022H 0.55 tolerated(0.57) benign(0.001) TCGA-XF-AAMQ-01 17 18087900 18087900 G A ALKBH5 Missense_Mutation p.E115K 0.63 tolerated(0.11) benign(0.131) TCGA-XF-AAMQ-01 17 21319816 21319816 G A KCNJ12 Missense_Mutation p.E388K 0.09 deleterious(0.04) possibly_damaging(0.625) TCGA-XF-AAMQ-01 17 39038894 39038894 G C KRT20 Missense_Mutation p.Q135E 0.34 tolerated(0.12) benign(0.044) TCGA-XF-AAMQ-01 17 39594867 39594867 G T KRT38 Missense_Mutation p.S299Y 0.28 deleterious(0) probably_damaging(0.983) TCGA-XF-AAMQ-01 17 43037637 43037637 G C C1QL1 Missense_Mutation p.I232M 0.41 deleterious(0) probably_damaging(0.986) TCGA-XF-AAMQ-01 17 46135695 46135695 C T NFE2L1 Silent p.Y337Y 0.38 TCGA-XF-AAMQ-01 17 47677572 47677572 C T SPOP 3'UTR 0.64 TCGA-XF-AAMQ-01 17 48166536 48166536 C T ITGA3 Silent p.I1036I 0.20 TCGA-XF-AAMQ-01 17 59945029 59945029 A C INTS2 Silent p.S1168S 0.48 TCGA-XF-AAMQ-01 17 59945048 59945048 T G INTS2 Missense_Mutation p.Q1162P 0.49 tolerated_low_confidence(0.29) benign(0) TCGA-XF-AAMQ-01 17 66352854 66352854 G A ARSG Missense_Mutation p.E205K 0.49 deleterious(0.02) possibly_damaging(0.604) TCGA-XF-AAMQ-01 17 706928 706928 G A NXN Silent p.A373A 0.77 TCGA-XF-AAMQ-01 17 73909787 73909787 C T FBF1 Silent p.Q1066Q 0.47 TCGA-XF-AAMQ-01 17 74162587 74162587 C T RNF157 Missense_Mutation p.E195K 0.46 tolerated(0.12) benign(0.147) TCGA-XF-AAMQ-01 17 7556818 7556818 C T ATP1B2 Missense_Mutation p.P80L 0.55 deleterious(0) probably_damaging(1) TCGA-XF-AAMQ-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.59 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMQ-01 17 78073554 78073554 G C CCDC40 Missense_Mutation p.E1137Q 0.55 tolerated(0.27) benign(0.038) TCGA-XF-AAMQ-01 17 7847529 7847529 G C CNTROB Missense_Mutation p.E512Q 0.68 tolerated(0.05) probably_damaging(0.98) TCGA-XF-AAMQ-01 17 79278799 79278799 C T LINC00482 RNA 0.44 TCGA-XF-AAMQ-01 18 22642576 22642576 C T ZNF521 3'UTR 0.43 TCGA-XF-AAMQ-01 18 25589753 25589753 G T CDH2 Missense_Mutation p.F210L 0.42 deleterious(0) probably_damaging(0.948) TCGA-XF-AAMQ-01 19 11531589 11531589 C T CCDC151 Missense_Mutation p.E568K 0.43 deleterious(0.03) benign(0.165) TCGA-XF-AAMQ-01 19 17615416 17615416 C G SLC27A1 Missense_Mutation p.L646V 0.18 deleterious(0) possibly_damaging(0.696) TCGA-XF-AAMQ-01 19 19603402 19603402 G A GATAD2A Missense_Mutation p.E139K 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-XF-AAMQ-01 19 22375890 22375890 G A ZNF676 Silent p.L20L 0.47 TCGA-XF-AAMQ-01 19 36045890 36045890 G A ATP4A Silent p.I805I 0.30 TCGA-XF-AAMQ-01 19 3746560 3746560 C G TJP3 Silent p.V705V 0.23 TCGA-XF-AAMQ-01 19 49136508 49136508 C T DBP Intron 0.36 TCGA-XF-AAMQ-01 19 49916240 49916240 G C CCDC155 Missense_Mutation p.E429Q 0.29 tolerated_low_confidence(0.12) benign(0.008) TCGA-XF-AAMQ-01 19 51022625 51022625 C T LRRC4B Silent p.L115L 0.56 TCGA-XF-AAMQ-01 19 53453010 53453010 C T ZNF816 3'UTR 0.26 TCGA-XF-AAMQ-01 19 53454270 53454270 C G ZNF816 Missense_Mutation p.R253T 0.55 deleterious(0.04) benign(0.348) TCGA-XF-AAMQ-01 19 55449552 55449552 G C NLRP7 Silent p.L663L 0.41 TCGA-XF-AAMQ-01 19 55687216 55687216 C G SYT5 Missense_Mutation p.G134A 0.44 tolerated(0.1) benign(0.217) TCGA-XF-AAMQ-01 19 5604849 5604849 G C SAFB2 Missense_Mutation p.I465M 0.35 deleterious(0) probably_damaging(0.94) TCGA-XF-AAMQ-01 19 58640462 58640462 G A ZNF329 Missense_Mutation p.H137Y 0.32 deleterious(0) benign(0.01) TCGA-XF-AAMQ-01 19 58863629 58863629 G C A1BG Intron 0.24 TCGA-XF-AAMQ-01 19 8615059 8615059 G A MYO1F Silent p.F362F 0.43 TCGA-XF-AAMQ-01 1 100340299 100340299 C A AGL Missense_Mutation p.P339T 0.41 tolerated(0.06) benign(0.061) TCGA-XF-AAMQ-01 1 109445852 109445852 G A GPSM2 Missense_Mutation p.R353K 0.33 tolerated(1) benign(0.003) TCGA-XF-AAMQ-01 1 114969902 114969902 C T TRIM33 Silent p.L439L 0.44 TCGA-XF-AAMQ-01 1 1233313 1233313 C G ACAP3 Missense_Mutation p.K339N 0.33 deleterious(0) benign(0.063) TCGA-XF-AAMQ-01 1 145456618 145456618 G C POLR3GL 3'UTR 0.40 TCGA-XF-AAMQ-01 1 1480340 1480340 C T SSU72 Silent p.K89K 0.51 TCGA-XF-AAMQ-01 1 149902432 149902432 G C MTMR11 Missense_Mutation p.S491C 0.46 tolerated(0.08) possibly_damaging(0.503) TCGA-XF-AAMQ-01 1 153751618 153751618 G A SLC27A3 Missense_Mutation p.E606K 0.36 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMQ-01 1 154794616 154794616 G A KCNN3 Silent p.S326S 0.33 TCGA-XF-AAMQ-01 1 155891351 155891351 G A KIAA0907 Nonsense_Mutation p.Q361* 0.34 TCGA-XF-AAMQ-01 1 158517049 158517049 A G OR6Y1 Missense_Mutation p.Y283H 0.51 deleterious(0.01) probably_damaging(1) TCGA-XF-AAMQ-01 1 160853266 160853266 G A ITLN1 Silent p.L37L 0.46 TCGA-XF-AAMQ-01 1 19518727 19518727 C A UBR4 Missense_Mutation p.R450L 0.37 possibly_damaging(0.688) TCGA-XF-AAMQ-01 1 204438515 204438515 G C PIK3C2B Missense_Mutation p.S139C 0.59 tolerated_low_confidence(0.05) possibly_damaging(0.533) TCGA-XF-AAMQ-01 1 214811246 214811246 C G CENPF Missense_Mutation p.S495C 0.39 possibly_damaging(0.855) TCGA-XF-AAMQ-01 1 22159841 22159841 G C HSPG2 Missense_Mutation p.S3672C 0.33 probably_damaging(0.984) TCGA-XF-AAMQ-01 1 222717232 222717232 G C HHIPL2 Silent p.L207L 0.30 TCGA-XF-AAMQ-01 1 231299634 231299634 G C TRIM67 Missense_Mutation p.E307Q 0.44 tolerated(0.14) possibly_damaging(0.614) TCGA-XF-AAMQ-01 1 24447591 24447591 C T IL22RA1 Missense_Mutation p.D477N 0.33 deleterious(0.02) benign(0.338) TCGA-XF-AAMQ-01 1 247875139 247875139 C T OR6F1 Missense_Mutation p.G307R 0.37 tolerated(0.37) benign(0.011) TCGA-XF-AAMQ-01 1 248813757 248813757 C A OR2T27 Missense_Mutation p.L143F 0.37 tolerated(0.19) benign(0.021) TCGA-XF-AAMQ-01 1 26156128 26156128 G A MTFR1L Missense_Mutation p.E194K 0.21 tolerated(0.16) benign(0.015) TCGA-XF-AAMQ-01 1 27480687 27480687 G A SLC9A1 Nonsense_Mutation p.R47* 0.53 TCGA-XF-AAMQ-01 1 32796275 32796275 C A HDAC1 Missense_Mutation p.L276I 0.49 deleterious(0) possibly_damaging(0.536) TCGA-XF-AAMQ-01 1 44457917 44457917 C G CCDC24 Missense_Mutation p.R54G 0.38 tolerated(0.05) benign(0.182) TCGA-XF-AAMQ-01 1 45808572 45808572 C G TOE1 Missense_Mutation p.F270L 0.41 deleterious(0) possibly_damaging(0.651) TCGA-XF-AAMQ-01 1 53679056 53679056 C T CPT2 Missense_Mutation p.T589M 0.30 deleterious(0) probably_damaging(1) TCGA-XF-AAMQ-01 1 54605681 54605681 G A CDCP2 Missense_Mutation p.R288C 0.09 deleterious(0.01) possibly_damaging(0.892) TCGA-XF-AAMQ-01 1 57159458 57159458 G C PRKAA2 Missense_Mutation p.D166H 0.58 deleterious(0) probably_damaging(0.978) TCGA-XF-AAMQ-01 1 58946806 58946806 G C OMA1 Missense_Mutation p.S469C 0.56 deleterious(0.04) possibly_damaging(0.88) TCGA-XF-AAMQ-01 1 6202292 6202292 C T CHD5 Missense_Mutation p.V778I 0.22 tolerated(0.09) probably_damaging(0.971) TCGA-XF-AAMQ-01 1 66723354 66723355 TC G PDE4B Frame_Shift_Del p.P168Lfs*12 0.25 TCGA-XF-AAMQ-01 1 77806202 77806202 G A AK5 Silent p.Q280Q 0.40 TCGA-XF-AAMQ-01 1 8398033 8398033 C T SLC45A1 Silent p.F585F 0.29 TCGA-XF-AAMQ-01 20 17937606 17937606 C T SNX5 Missense_Mutation p.D43N 0.36 deleterious(0.04) possibly_damaging(0.708) TCGA-XF-AAMQ-01 20 25249783 25249783 G T PYGB Nonsense_Mutation p.E122* 0.43 TCGA-XF-AAMQ-01 20 31685590 31685590 C T BPIFB4 Silent p.D522D 0.48 TCGA-XF-AAMQ-01 20 33330336 33330336 C G NCOA6 Missense_Mutation p.E1242Q 0.42 probably_damaging(0.998) TCGA-XF-AAMQ-01 20 33586200 33586200 C T MYH7B Missense_Mutation p.R1326C 0.14 possibly_damaging(0.899) TCGA-XF-AAMQ-01 20 42972041 42972041 G A R3HDML Missense_Mutation p.M135I 0.46 deleterious(0.01) benign(0.001) TCGA-XF-AAMQ-01 20 43118121 43118121 C T TTPAL Missense_Mutation p.S323L 0.39 tolerated_low_confidence(0.16) benign(0.031) TCGA-XF-AAMQ-01 20 469347 469347 G C CSNK2A1 Missense_Mutation p.P267A 0.43 tolerated(0.17) benign(0.168) TCGA-XF-AAMQ-01 20 4705354 4705354 G A PRND Missense_Mutation p.E53K 0.29 tolerated_low_confidence(0.16) possibly_damaging(0.587) TCGA-XF-AAMQ-01 20 47630387 47630387 G C ARFGEF2 Missense_Mutation p.E1357Q 0.41 deleterious(0) possibly_damaging(0.472) TCGA-XF-AAMQ-01 20 47870308 47870308 C T ZNFX1 Silent p.P1000P 0.42 TCGA-XF-AAMQ-01 20 56188316 56188316 C G ZBP1 Missense_Mutation p.Q191H 0.26 deleterious(0) probably_damaging(0.934) TCGA-XF-AAMQ-01 21 31797952 31797952 C G KRTAP13-3 Silent p.L93L 0.68 TCGA-XF-AAMQ-01 21 37665759 37665759 G A DOPEY2 Missense_Mutation p.D2263N 0.26 tolerated(0.49) benign(0.001) TCGA-XF-AAMQ-01 21 43256709 43256709 G C PRDM15 Missense_Mutation p.L717V 0.24 tolerated(0.07) possibly_damaging(0.692) TCGA-XF-AAMQ-01 22 19263159 19263159 C G CLTCL1 Silent p.V79V 0.69 TCGA-XF-AAMQ-01 22 19481852 19481852 G A CDC45 Silent p.E163E 0.38 TCGA-XF-AAMQ-01 22 38877252 38877252 G A KDELR3 Silent p.V129V 0.42 TCGA-XF-AAMQ-01 22 39534665 39534665 C T CBX7 Silent p.P74P 0.15 TCGA-XF-AAMQ-01 22 39826219 39826219 G T TAB1 Missense_Mutation p.A503S 0.32 tolerated_low_confidence(0.07) benign(0.003) TCGA-XF-AAMQ-01 22 42609136 42609136 G A TCF20 Nonsense_Mutation p.Q726* 0.38 TCGA-XF-AAMQ-01 2 127944943 127944943 G C CYP27C1 Missense_Mutation p.I341M 0.63 deleterious(0.03) probably_damaging(0.991) TCGA-XF-AAMQ-01 2 160086761 160086761 C T TANC1 Silent p.R1608R 0.81 TCGA-XF-AAMQ-01 2 177135091 177135091 A T MTX2 Intron 0.75 TCGA-XF-AAMQ-01 2 178378611 178378611 C T AGPS Nonsense_Mutation p.Q558* 0.80 TCGA-XF-AAMQ-01 2 191535076 191535076 C T NAB1 Nonsense_Mutation p.Q282* 0.73 TCGA-XF-AAMQ-01 2 20113235 20113235 G A WDR35 3'UTR 0.92 TCGA-XF-AAMQ-01 2 20114010 20114010 G A WDR35 Silent p.I1061I 0.79 TCGA-XF-AAMQ-01 2 239002529 239002529 G C SCLY Missense_Mutation p.E325Q 0.73 tolerated(0.13) benign(0.11) TCGA-XF-AAMQ-01 2 48061940 48061940 C T FBXO11 Missense_Mutation p.R263K 0.81 tolerated(0.15) benign(0.001) TCGA-XF-AAMQ-01 2 55252820 55252820 G A RTN4 Silent p.L805L 0.70 TCGA-XF-AAMQ-01 2 73679850 73679850 G C ALMS1 Missense_Mutation p.D2065H 0.66 benign(0.03) TCGA-XF-AAMQ-01 2 99013494 99013494 G A CNGA3 Missense_Mutation p.A621T 0.79 tolerated(0.28) benign(0.007) TCGA-XF-AAMQ-01 3 121416969 121416969 C T GOLGB1 Missense_Mutation p.E801K 0.39 probably_damaging(0.999) TCGA-XF-AAMQ-01 3 148459841 148459841 G A AGTR1 Missense_Mutation p.R340H 0.45 deleterious(0.05) benign(0.008) TCGA-XF-AAMQ-01 3 157289761 157289761 C T C3orf55 Silent p.F77F 0.30 TCGA-XF-AAMQ-01 3 164792339 164792339 G A SI Missense_Mutation p.P79S 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-XF-AAMQ-01 3 182948777 182948777 C T MCF2L2 Missense_Mutation p.E631K 0.35 deleterious(0.01) probably_damaging(0.973) TCGA-XF-AAMQ-01 3 23932159 23932159 G A UBE2E1 3'UTR 0.50 TCGA-XF-AAMQ-01 3 37367049 37367049 C A GOLGA4 Silent p.T1246T 0.21 TCGA-XF-AAMQ-01 3 38783857 38783857 C T SCN10A Silent p.V677V 0.40 TCGA-XF-AAMQ-01 3 62319145 62319145 G A C3orf14 3'UTR 0.48 TCGA-XF-AAMQ-01 3 85961687 85961687 A C CADM2 Missense_Mutation p.I225L 0.57 deleterious(0) benign(0.138) TCGA-XF-AAMQ-01 4 100273877 100273877 G C ADH1C 5'UTR 0.87 TCGA-XF-AAMQ-01 4 183676062 183676062 G A TENM3 Silent p.A1514A 0.16 TCGA-XF-AAMQ-01 4 187524787 187524787 G C FAT1 Missense_Mutation p.I3631M 0.74 possibly_damaging(0.474) TCGA-XF-AAMQ-01 4 3768849 3768849 C T ADRA2C Silent p.I172I 0.71 TCGA-XF-AAMQ-01 4 68919738 68919738 G A TMPRSS11F Silent p.Y402Y 0.20 TCGA-XF-AAMQ-01 4 87593649 87593649 G C PTPN13 Missense_Mutation p.E83Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMQ-01 4 94436467 94436467 G C GRID2 Missense_Mutation p.E700Q 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-XF-AAMQ-01 5 130987562 130987562 G A FNIP1 Missense_Mutation p.S1080F 0.38 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMQ-01 5 150657068 150657068 G A SLC36A3 Silent p.I474I 0.41 TCGA-XF-AAMQ-01 5 153796621 153796621 A C GALNT10 3'UTR 0.53 TCGA-XF-AAMQ-01 5 171661228 171661228 C G UBTD2 Missense_Mutation p.E69Q 0.56 deleterious(0) benign(0.108) TCGA-XF-AAMQ-01 5 171765850 171765850 C T SH3PXD2B Silent p.Q753Q 0.30 TCGA-XF-AAMQ-01 5 172659846 172659846 G T NKX2-5 Nonsense_Mutation p.S234* 0.42 TCGA-XF-AAMQ-01 5 175528070 175528070 G A FAM153B Missense_Mutation p.E118K 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.486) TCGA-XF-AAMQ-01 5 178309997 178309998 - A ZNF354B Frame_Shift_Ins p.T184Nfs*6 0.10 TCGA-XF-AAMQ-01 5 37061085 37061085 G A NIPBL Missense_Mutation p.E2609K 0.28 tolerated(0.17) benign(0.016) TCGA-XF-AAMQ-01 5 70819998 70819998 G A BDP1 Missense_Mutation p.E1874K 0.51 deleterious(0) probably_damaging(0.994) TCGA-XF-AAMQ-01 5 78610324 78610324 C G JMY Nonsense_Mutation p.S770* 0.23 TCGA-XF-AAMQ-01 5 80548581 80548581 G A CKMT2 Missense_Mutation p.A74T 0.53 tolerated(0.15) benign(0.062) TCGA-XF-AAMQ-01 6 1313520 1313520 G A FOXQ1 Nonsense_Mutation p.W194* 0.74 TCGA-XF-AAMQ-01 6 151785644 151785644 G A C6orf211 Missense_Mutation p.G150E 0.81 tolerated(1) benign(0.001) TCGA-XF-AAMQ-01 6 152382165 152382165 C T ESR1 Silent p.F425F 0.82 TCGA-XF-AAMQ-01 6 158902259 158902259 G A TULP4 Missense_Mutation p.R475Q 0.69 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMQ-01 6 25914794 25914794 T C SLC17A2 Intron 0.25 TCGA-XF-AAMQ-01 6 35391757 35391757 G C PPARD Missense_Mutation p.K153N 0.81 deleterious(0) possibly_damaging(0.821) TCGA-XF-AAMQ-01 6 42984848 42984848 C A KLHDC3 Intron 0.78 TCGA-XF-AAMQ-01 6 43473402 43473402 G C TJAP1 Missense_Mutation p.E495Q 0.90 deleterious(0.02) probably_damaging(0.999) TCGA-XF-AAMQ-01 6 43604345 43604345 G A MAD2L1BP Missense_Mutation p.E124K 0.86 tolerated(0.08) benign(0.329) TCGA-XF-AAMQ-01 6 89888608 89888608 G C GABRR1 Missense_Mutation p.Q441E 0.86 tolerated(0.75) benign(0.054) TCGA-XF-AAMQ-01 7 127013783 127013783 C A ZNF800 Missense_Mutation p.R536L 0.32 deleterious(0) probably_damaging(0.982) TCGA-XF-AAMQ-01 7 140244441 140244441 G A DENND2A Silent p.V768V 0.34 TCGA-XF-AAMQ-01 7 140439747 140439747 C A BRAF Splice_Site p.X665_splice 0.37 TCGA-XF-AAMQ-01 7 143020477 143020477 G A CLCN1 Missense_Mutation p.E258K 0.35 deleterious(0.04) possibly_damaging(0.657) TCGA-XF-AAMQ-01 7 157931069 157931069 C T PTPRN2 Missense_Mutation p.G350D 0.47 tolerated(0.38) benign(0) TCGA-XF-AAMQ-01 7 31014093 31014093 C G GHRHR Missense_Mutation p.F267L 0.43 tolerated(0.13) benign(0.077) TCGA-XF-AAMQ-01 7 44268481 44268481 G A CAMK2B Missense_Mutation p.S461L 0.42 tolerated_low_confidence(0.12) benign(0.307) TCGA-XF-AAMQ-01 7 45931585 45931585 G C IGFBP1 Missense_Mutation p.E192Q 0.33 tolerated(1) benign(0.009) TCGA-XF-AAMQ-01 7 48311894 48311894 C A ABCA13 Missense_Mutation p.F877L 0.16 benign(0.015) TCGA-XF-AAMQ-01 7 56082739 56082739 C T PSPH Missense_Mutation p.D183N 0.45 deleterious(0) benign(0.283) TCGA-XF-AAMQ-01 7 99123476 99123476 G A ZKSCAN5 Silent p.Q271Q 0.36 TCGA-XF-AAMQ-01 7 99725689 99725689 C T MBLAC1 Missense_Mutation p.A224V 0.48 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMQ-01 8 10470786 10470786 C T RP1L1 Silent p.L274L 0.75 TCGA-XF-AAMQ-01 8 105507362 105507362 C T LRP12 Silent p.L552L 0.33 TCGA-XF-AAMQ-01 8 10555224 10555224 C T C8orf74 Silent p.I119I 0.73 TCGA-XF-AAMQ-01 8 10557759 10557759 C T C8orf74 Silent p.L221L 0.68 TCGA-XF-AAMQ-01 8 10557865 10557865 C G C8orf74 Missense_Mutation p.L257V 0.82 deleterious(0) possibly_damaging(0.904) TCGA-XF-AAMQ-01 8 113326233 113326233 G A CSMD3 Missense_Mutation p.S2533L 0.38 deleterious(0.04) possibly_damaging(0.469) TCGA-XF-AAMQ-01 8 113349775 113349775 C T CSMD3 Missense_Mutation p.E2280K 0.41 deleterious(0.02) possibly_damaging(0.766) TCGA-XF-AAMQ-01 8 119938838 119938838 C G TNFRSF11B Missense_Mutation p.E238Q 0.39 deleterious(0) possibly_damaging(0.844) TCGA-XF-AAMQ-01 8 125987911 125987911 C G ZNF572 Nonsense_Mutation p.S10* 0.37 TCGA-XF-AAMQ-01 8 133650329 133650329 T C LRRC6 Missense_Mutation p.D94G 0.28 deleterious(0) probably_damaging(1) TCGA-XF-AAMQ-01 8 143995685 143995685 C T CYP11B2 Missense_Mutation p.D317N 0.45 deleterious(0) probably_damaging(0.976) TCGA-XF-AAMQ-01 8 144808837 144808837 C G FAM83H Missense_Mutation p.E932Q 0.46 deleterious(0.04) probably_damaging(0.925) TCGA-XF-AAMQ-01 8 144808838 144808838 C T FAM83H Silent p.P931P 0.46 TCGA-XF-AAMQ-01 8 145018829 145018829 C A PLEC Intron 0.29 TCGA-XF-AAMQ-01 8 145139643 145139643 C T GPAA1 Silent p.F343F 0.27 TCGA-XF-AAMQ-01 8 57353950 57353950 G A PENK Missense_Mutation p.R229W 0.43 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMQ-01 8 69400281 69400281 G A C8orf34 Missense_Mutation p.D254N 0.36 tolerated(0.05) possibly_damaging(0.871) TCGA-XF-AAMQ-01 9 116856718 116856718 C G KIF12 Missense_Mutation p.Q241H 0.76 tolerated(0.57) benign(0.008) TCGA-XF-AAMQ-01 9 139327496 139327496 G A INPP5E Silent p.I397I 0.75 TCGA-XF-AAMQ-01 9 19058931 19058931 G C HAUS6 Missense_Mutation p.Q612E 0.61 tolerated(0.27) benign(0.039) TCGA-XF-AAMQ-01 9 340196 340196 C T DOCK8 Silent p.I518I 0.74 TCGA-XF-AAMQ-01 9 71080113 71080113 G C PGM5 Missense_Mutation p.S383T 0.79 deleterious(0) possibly_damaging(0.744) TCGA-XF-AAMQ-01 9 71833184 71833184 G C TJP2 Missense_Mutation p.R115T 0.62 deleterious(0) possibly_damaging(0.905) TCGA-XF-AAMQ-01 X 100395829 100395830 - T CENPI Intron 0.35 TCGA-XF-AAMQ-01 X 118109165 118109165 C T LONRF3 Missense_Mutation p.T141M 0.30 tolerated(0.1) benign(0.064) TCGA-XF-AAMQ-01 X 118148221 118148221 C T LONRF3 Nonsense_Mutation p.Q676* 0.32 TCGA-XF-AAMQ-01 X 139038288 139038288 C G CXorf66 Missense_Mutation p.D285H 0.32 tolerated(0.33) possibly_damaging(0.473) TCGA-XF-AAMQ-01 X 146342068 146342068 C G MIR509-1 RNA 0.37 TCGA-XF-AAMQ-01 X 153049757 153049757 G A SRPK3 Missense_Mutation p.G386S 0.16 tolerated(0.7) possibly_damaging(0.862) TCGA-XF-AAMQ-01 X 153585851 153585851 G A FLNA Silent p.Y1632Y 0.08 TCGA-XF-AAMQ-01 X 15560204 15560204 G A BMX Silent p.L498L 0.42 TCGA-XF-AAMQ-01 X 22012483 22012483 C G SMS 3'UTR 0.32 TCGA-XF-AAMQ-01 X 48419375 48419375 C G TBC1D25 3'UTR 0.59 TCGA-XF-AAMQ-01 X 53441781 53441781 G A SMC1A Nonsense_Mutation p.Q113* 0.27 TCGA-XF-AAMQ-01 X 67431953 67431953 C T OPHN1 Silent p.Q233Q 0.50 TCGA-XF-AAMQ-01 X 71895936 71895936 G C PHKA1 Nonsense_Mutation p.S201* 0.39 TCGA-XF-AAMQ-01 X 73062572 73062572 G A XIST RNA 0.42 TCGA-XF-AAMQ-01 X 84510742 84510742 T C ZNF711 Missense_Mutation p.I186T 0.37 tolerated(0.1) possibly_damaging(0.456) TCGA-XF-AAMR-01 10 32311928 32311928 T C KIF5B Missense_Mutation p.T588A 0.27 tolerated(0.13) benign(0.031) TCGA-XF-AAMR-01 10 35360127 35360127 G T CUL2 Nonsense_Mutation p.S59* 0.19 TCGA-XF-AAMR-01 10 46322524 46322524 C G AGAP4 Missense_Mutation p.W277C 0.47 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMR-01 10 6539050 6539050 C T PRKCQ Missense_Mutation p.D203N 0.16 tolerated(0.06) benign(0.275) TCGA-XF-AAMR-01 10 6539060 6539060 C T PRKCQ Silent p.K199K 0.15 TCGA-XF-AAMR-01 11 120998580 120998580 G A TECTA Missense_Mutation p.E632K 0.16 tolerated(0.41) benign(0.407) TCGA-XF-AAMR-01 11 12280035 12280035 C T MICAL2 Missense_Mutation p.H1055Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMR-01 11 122848410 122848410 C T BSX Missense_Mutation p.E217K 0.26 deleterious(0.03) benign(0.023) TCGA-XF-AAMR-01 11 124310696 124310696 C T OR8B8 Missense_Mutation p.G96R 0.29 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-XF-AAMR-01 11 16810698 16810698 G A PLEKHA7 Missense_Mutation p.T1101M 0.24 tolerated(0.1) benign(0.002) TCGA-XF-AAMR-01 11 66034297 66034297 G A KLC2 Intron 0.32 TCGA-XF-AAMR-01 11 66444614 66444614 G A RBM4B 5'UTR 0.19 TCGA-XF-AAMR-01 11 68707082 68707082 G A IGHMBP2 Silent p.G955G 0.25 TCGA-XF-AAMR-01 11 71726124 71726124 C T NUMA1 Missense_Mutation p.E809K 0.15 probably_damaging(0.998) TCGA-XF-AAMR-01 11 71727229 71727229 C G NUMA1 Missense_Mutation p.E440D 0.17 benign(0.018) TCGA-XF-AAMR-01 11 71727240 71727240 C G NUMA1 Missense_Mutation p.E437Q 0.15 benign(0.212) TCGA-XF-AAMR-01 11 71727559 71727559 C T NUMA1 Silent p.K379K 0.17 TCGA-XF-AAMR-01 11 71727562 71727562 C T NUMA1 Silent p.E378E 0.15 TCGA-XF-AAMR-01 11 71727567 71727567 C T NUMA1 Missense_Mutation p.E377K 0.15 possibly_damaging(0.46) TCGA-XF-AAMR-01 12 29474782 29474782 C A FAR2 Missense_Mutation p.F394L 0.19 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMR-01 12 2968461 2968461 C T FOXM1 Silent p.R583R 0.23 TCGA-XF-AAMR-01 12 48141628 48141628 G A RAPGEF3 Missense_Mutation p.A447V 0.17 tolerated(0.21) benign(0.013) TCGA-XF-AAMR-01 12 6438472 6438472 G A TNFRSF1A 3'UTR 0.16 TCGA-XF-AAMR-01 12 70988421 70988421 C T PTPRB Missense_Mutation p.E448K 0.27 deleterious(0.02) possibly_damaging(0.475) TCGA-XF-AAMR-01 12 70988422 70988422 C T PTPRB Silent p.V447V 0.27 TCGA-XF-AAMR-01 12 88379780 88379780 T C C12orf50 Missense_Mutation p.K325E 0.19 tolerated(0.06) possibly_damaging(0.788) TCGA-XF-AAMR-01 12 99019846 99019846 A G IKBIP Silent p.N332N 0.14 TCGA-XF-AAMR-01 13 101714454 101714454 A C NALCN Missense_Mutation p.S1541A 0.34 deleterious(0) possibly_damaging(0.844) TCGA-XF-AAMR-01 13 111298408 111298408 G A CARS2 Missense_Mutation p.A408V 0.38 deleterious(0.03) benign(0.217) TCGA-XF-AAMR-01 13 20987468 20987468 C T CRYL1 Missense_Mutation p.R231Q 0.20 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-XF-AAMR-01 13 95899984 95899984 A C ABCC4 Missense_Mutation p.I33S 0.13 tolerated(0.16) benign(0.044) TCGA-XF-AAMR-01 14 38724822 38724822 G A CLEC14A Missense_Mutation p.R136C 0.25 deleterious(0.04) possibly_damaging(0.851) TCGA-XF-AAMR-01 14 56763378 56763378 C G PELI2 Missense_Mutation p.L253V 0.18 deleterious(0.03) possibly_damaging(0.822) TCGA-XF-AAMR-01 14 69256784 69256785 - A ZFP36L1 Frame_Shift_Ins p.H162Pfs*19 0.22 TCGA-XF-AAMR-01 14 74411422 74411422 C T FAM161B Missense_Mutation p.E244K 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMR-01 15 31851254 31851254 C T OTUD7A Silent p.L156L 0.21 TCGA-XF-AAMR-01 15 42528584 42528584 G A TMEM87A Missense_Mutation p.S301L 0.36 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMR-01 15 43023132 43023132 G A CDAN1 Silent p.L666L 0.21 TCGA-XF-AAMR-01 15 43473451 43473451 G A TMEM62 Missense_Mutation p.G520E 0.22 deleterious(0) probably_damaging(0.959) TCGA-XF-AAMR-01 15 52876944 52876944 C T FAM214A Silent p.L1025L 0.17 TCGA-XF-AAMR-01 15 63131165 63131165 G A TLN2 Silent p.V2495V 0.16 TCGA-XF-AAMR-01 15 78217385 78217385 G A RP11-114H24.7 3'Flank 0.42 TCGA-XF-AAMR-01 16 1270949 1270949 C G CACNA1H Silent p.P2339P 0.35 TCGA-XF-AAMR-01 16 22161217 22161217 G C VWA3A Missense_Mutation p.A1032P 0.21 tolerated(0.13) benign(0.261) TCGA-XF-AAMR-01 16 31138519 31138519 G A KAT8 Missense_Mutation p.V176M 0.11 deleterious(0.01) possibly_damaging(0.658) TCGA-XF-AAMR-01 16 31487362 31487362 C A TGFB1I1 Missense_Mutation p.H248Q 0.09 deleterious(0) probably_damaging(1) TCGA-XF-AAMR-01 16 48204027 48204027 G A ABCC11 Missense_Mutation p.R1294C 0.31 tolerated(0.07) benign(0.344) TCGA-XF-AAMR-01 16 58568241 58568241 C T CNOT1 Missense_Mutation p.C1902Y 0.30 deleterious(0) possibly_damaging(0.468) TCGA-XF-AAMR-01 16 67700166 67700166 G C ENKD1 Missense_Mutation p.Q30E 0.35 deleterious(0.01) benign(0.016) TCGA-XF-AAMR-01 17 40767058 40767058 G A TUBG1 Silent p.%3D 0.17 TCGA-XF-AAMR-01 17 40767114 40767114 G C TUBG1 3'UTR 0.31 TCGA-XF-AAMR-01 17 41245878 41245878 G T BRCA1 Missense_Mutation p.T557K 0.17 deleterious(0.02) possibly_damaging(0.508) TCGA-XF-AAMR-01 17 44828881 44828881 T G NSF Missense_Mutation p.F686V 0.23 deleterious(0.01) probably_damaging(0.916) TCGA-XF-AAMR-01 17 45258931 45258931 C T CDC27 Missense_Mutation p.E34K 0.15 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMR-01 17 7469082 7469082 G T SENP3 Splice_Site p.X421_splice 0.26 TCGA-XF-AAMR-01 17 77926584 77926584 G A TBC1D16 Silent p.F271F 0.16 TCGA-XF-AAMR-01 17 78972982 78972982 G A CHMP6 3'UTR 0.20 TCGA-XF-AAMR-01 17 79477789 79477789 A G ACTG1 Missense_Mutation p.F352S 0.16 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-XF-AAMR-01 18 44336412 44336412 G T ST8SIA5 Missense_Mutation p.F20L 0.12 benign(0.341) TCGA-XF-AAMR-01 19 11569393 11569393 G A ELAVL3 Missense_Mutation p.R123W 0.21 deleterious(0) possibly_damaging(0.852) TCGA-XF-AAMR-01 19 18684180 18684180 G C UBA52 Missense_Mutation p.E24Q 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-XF-AAMR-01 19 38951088 38951088 G C RYR1 Missense_Mutation p.E812Q 0.22 probably_damaging(0.978) TCGA-XF-AAMR-01 19 54822870 54822870 C T LILRA5 Missense_Mutation p.E176K 0.20 deleterious(0.03) probably_damaging(0.926) TCGA-XF-AAMR-01 1 109793731 109793731 C A CELSR2 Missense_Mutation p.P344T 0.17 deleterious(0.01) possibly_damaging(0.842) TCGA-XF-AAMR-01 1 109793732 109793732 C T CELSR2 Missense_Mutation p.P344L 0.17 tolerated(0.06) benign(0.22) TCGA-XF-AAMR-01 1 109793864 109793864 C T CELSR2 Missense_Mutation p.S388F 0.13 deleterious(0.02) benign(0.02) TCGA-XF-AAMR-01 1 110038700 110038700 G C CYB561D1 Missense_Mutation p.G192A 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAMR-01 1 114447399 114447399 C T AP4B1 5'UTR 0.11 TCGA-XF-AAMR-01 1 163043313 163043313 C T RGS4 Silent p.I190I 0.17 TCGA-XF-AAMR-01 1 197898235 197898235 C T LHX9 Missense_Mutation p.S347L 0.14 tolerated(0.13) benign(0.028) TCGA-XF-AAMR-01 1 22817053 22817053 G A ZBTB40 Silent p.A204A 0.19 TCGA-XF-AAMR-01 1 244586160 244586160 C T ADSS Missense_Mutation p.E214K 0.18 tolerated(0.09) benign(0.043) TCGA-XF-AAMR-01 1 245850477 245850477 G T KIF26B Missense_Mutation p.A1398S 0.24 tolerated(0.19) unknown(0) TCGA-XF-AAMR-01 1 74670521 74670521 G C FPGT Missense_Mutation p.D264H 0.28 tolerated(0.14) benign(0.025) TCGA-XF-AAMR-01 1 84417612 84417612 G C TTLL7 Missense_Mutation p.Q25E 0.19 tolerated_low_confidence(0.16) benign(0.001) TCGA-XF-AAMR-01 20 33337840 33337840 G C NCOA6 Missense_Mutation p.Q720E 0.13 probably_damaging(0.966) TCGA-XF-AAMR-01 20 44680355 44680355 C T SLC12A5 Silent p.F764F 0.15 TCGA-XF-AAMR-01 20 55026997 55026997 C G CASS4 Silent p.V255V 0.27 TCGA-XF-AAMR-01 20 61488847 61488847 C T TCFL5 Missense_Mutation p.E380K 0.14 tolerated(0.28) possibly_damaging(0.625) TCGA-XF-AAMR-01 21 34037238 34037238 C G SYNJ1 Missense_Mutation p.Q802H 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-XF-AAMR-01 22 21363149 21363149 C T AC002472.1 5'Flank 0.19 TCGA-XF-AAMR-01 22 36922179 36922179 C G EIF3D Splice_Site 0.10 TCGA-XF-AAMR-01 2 203590972 203590972 G C FAM117B Splice_Site p.X283_splice 0.16 TCGA-XF-AAMR-01 2 238434266 238434266 C T MLPH Missense_Mutation p.S233L 0.07 tolerated(0.06) benign(0.008) TCGA-XF-AAMR-01 2 241420447 241420447 G A ANKMY1 Missense_Mutation p.R896C 0.20 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMR-01 2 25655804 25655804 C G DTNB Missense_Mutation p.E470Q 0.27 tolerated(0.14) benign(0.122) TCGA-XF-AAMR-01 3 123649967 123649967 C T CCDC14 Missense_Mutation p.R594Q 0.10 deleterious(0.03) possibly_damaging(0.776) TCGA-XF-AAMR-01 3 123649972 123649972 C T CCDC14 Silent p.V592V 0.10 TCGA-XF-AAMR-01 3 186435293 186435293 G A KNG1 5'UTR 0.11 TCGA-XF-AAMR-01 3 186435318 186435318 G A KNG1 5'UTR 0.09 TCGA-XF-AAMR-01 3 77147369 77147369 C G ROBO2 Missense_Mutation p.S105C 0.21 deleterious(0) unknown(0) TCGA-XF-AAMR-01 4 123663498 123663498 G A BBS12 Missense_Mutation p.E151K 0.20 tolerated(0.53) possibly_damaging(0.824) TCGA-XF-AAMR-01 4 141598232 141598232 C T TBC1D9 Missense_Mutation p.S292N 0.19 tolerated(0.99) benign(0.322) TCGA-XF-AAMR-01 4 156751057 156751057 G C ASIC5 Missense_Mutation p.P490R 0.16 tolerated_low_confidence(0.7) benign(0.002) TCGA-XF-AAMR-01 4 187004578 187004578 G T TLR3 Nonsense_Mutation p.E580* 0.15 TCGA-XF-AAMR-01 4 2698141 2698141 C T FAM193A Missense_Mutation p.R819C 0.20 deleterious(0) possibly_damaging(0.736) TCGA-XF-AAMR-01 4 3039236 3039236 G A GRK4 Missense_Mutation p.E515K 0.18 deleterious(0.01) possibly_damaging(0.869) TCGA-XF-AAMR-01 4 3235030 3235030 C G HTT Silent p.L2802L 0.20 TCGA-XF-AAMR-01 4 39846337 39846337 C T PDS5A Missense_Mutation p.E1163K 0.14 tolerated(0.11) benign(0.287) TCGA-XF-AAMR-01 4 6066679 6066679 C T JAKMIP1 Silent p.T453T 0.12 TCGA-XF-AAMR-01 4 79284666 79284666 G A FRAS1 Splice_Site p.X808_splice 0.21 TCGA-XF-AAMR-01 5 154244931 154244931 C G CNOT8 Missense_Mutation p.F99L 0.17 deleterious(0.01) possibly_damaging(0.876) TCGA-XF-AAMR-01 5 53814560 53814560 G C SNX18 Missense_Mutation p.V260L 0.22 deleterious(0.03) benign(0.025) TCGA-XF-AAMR-01 5 5466456 5466456 G C KIAA0947 Missense_Mutation p.E1968Q 0.19 tolerated(0.1) possibly_damaging(0.604) TCGA-XF-AAMR-01 5 64875361 64875361 C G PPWD1 Missense_Mutation p.S424C 0.15 deleterious(0) possibly_damaging(0.903) TCGA-XF-AAMR-01 5 70308224 70308224 G C NAIP Silent p.V173V 0.19 TCGA-XF-AAMR-01 5 70828242 70828242 G C BDP1 Missense_Mutation p.L1960F 0.13 deleterious(0.03) probably_damaging(0.97) TCGA-XF-AAMR-01 5 92956692 92956692 C T FAM172A 3'UTR 0.29 TCGA-XF-AAMR-01 6 136699007 136699007 C T MAP7 Splice_Site p.X235_splice 0.40 TCGA-XF-AAMR-01 6 146350564 146350564 G A GRM1 5'UTR 0.21 TCGA-XF-AAMR-01 6 150713491 150713491 G A IYD Silent p.P127P 0.17 TCGA-XF-AAMR-01 6 34497473 34497473 G C PACSIN1 Missense_Mutation p.D215H 0.12 deleterious(0) possibly_damaging(0.688) TCGA-XF-AAMR-01 6 34827250 34827250 C T UHRF1BP1 Silent p.L1039L 0.16 TCGA-XF-AAMR-01 6 7891941 7891941 C T TXNDC5 Silent p.P215P 0.09 TCGA-XF-AAMR-01 7 100685609 100685609 A T MUC17 Missense_Mutation p.T3638S 0.12 benign(0.001) TCGA-XF-AAMR-01 7 27204563 27204563 C T HOXA9 Missense_Mutation p.E172K 0.19 tolerated(0.5) benign(0.253) TCGA-XF-AAMR-01 7 72988743 72988743 G A TBL2 Silent p.F77F 0.27 TCGA-XF-AAMR-01 7 73753110 73753110 G A CLIP2 Missense_Mutation p.E152K 0.29 deleterious(0.01) benign(0.033) TCGA-XF-AAMR-01 7 99277533 99277533 C T CYP3A5 5'UTR 0.10 TCGA-XF-AAMR-01 8 145724197 145724197 G A PPP1R16A Missense_Mutation p.E102K 0.26 deleterious(0) probably_damaging(0.99) TCGA-XF-AAMR-01 8 53568587 53568587 C G RB1CC1 Missense_Mutation p.E1268Q 0.16 tolerated(0.07) probably_damaging(0.997) TCGA-XF-AAMR-01 8 59409363 59409363 C T CYP7A1 Silent p.E236E 0.21 TCGA-XF-AAMR-01 8 69351787 69351787 C T C8orf34 Silent p.L127L 0.15 TCGA-XF-AAMR-01 8 97621773 97621773 G A SDC2 Silent p.A201A 0.28 TCGA-XF-AAMR-01 9 130868005 130868005 C A SLC25A25 Intron 0.23 TCGA-XF-AAMR-01 9 135797312 135797323 GCGTACACACTG - TSC1 In_Frame_Del p.S183_A186del 0.18 TCGA-XF-AAMR-01 9 2838508 2838508 C T KIAA0020 5'UTR 0.26 TCGA-XF-AAMR-01 9 37762013 37762013 G A TRMT10B Missense_Mutation p.E29K 0.21 deleterious_low_confidence(0.03) benign(0.118) TCGA-XF-AAMR-01 9 6481669 6481669 C T UHRF2 Missense_Mutation p.S396F 0.24 deleterious(0) probably_damaging(0.987) TCGA-XF-AAMR-01 9 72338340 72338342 TTC - PTAR1 In_Frame_Del p.E283del 0.25 TCGA-XF-AAMR-01 9 90585510 90585510 C T CDK20 Missense_Mutation p.R179H 0.16 tolerated(0.06) benign(0.329) TCGA-XF-AAMR-01 9 99285914 99285914 C T CDC14B Missense_Mutation p.C347Y 0.07 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMR-01 X 140785604 140785604 G A SPANXD 3'UTR 0.43 TCGA-XF-AAMR-01 X 21874979 21874979 C T YY2 Missense_Mutation p.S126L 0.32 tolerated(0.23) benign(0.007) TCGA-XF-AAMR-01 X 3002515 3002515 C G ARSF Missense_Mutation p.S213C 0.31 tolerated(0.13) benign(0.076) TCGA-XF-AAMR-01 X 46508179 46508179 G A SLC9A7 Silent p.L467L 0.21 TCGA-XF-AAMT-01 10 120877094 120877094 G A FAM45A Silent p.K132K 0.27 TCGA-XF-AAMT-01 10 128821529 128821529 A G DOCK1 Missense_Mutation p.T444A 0.27 tolerated(0.06) benign(0.054) TCGA-XF-AAMT-01 10 129911690 129911690 C T MKI67 Splice_Site p.X552_splice 0.27 TCGA-XF-AAMT-01 10 18828440 18828440 C A CACNB2 Missense_Mutation p.H590Q 0.25 tolerated_low_confidence(0.24) probably_damaging(0.995) TCGA-XF-AAMT-01 10 73326645 73326645 G A CDH23 Silent p.E192E 0.42 TCGA-XF-AAMT-01 10 8100728 8100728 C T GATA3 Silent p.F234F 0.32 TCGA-XF-AAMT-01 10 99511204 99511204 T A ZFYVE27 Missense_Mutation p.F292L 0.56 tolerated(0.12) possibly_damaging(0.68) TCGA-XF-AAMT-01 11 6655447 6655447 G A DCHS1 Missense_Mutation p.R630C 0.09 deleterious(0.01) possibly_damaging(0.601) TCGA-XF-AAMT-01 11 77885010 77885010 C A KCTD21 Missense_Mutation p.E197D 0.13 tolerated(0.2) possibly_damaging(0.899) TCGA-XF-AAMT-01 11 78380675 78380675 A T TENM4 Missense_Mutation p.Y2239N 0.34 deleterious(0) probably_damaging(0.961) TCGA-XF-AAMT-01 12 109671619 109671619 C T ACACB Silent p.A1402A 0.35 TCGA-XF-AAMT-01 12 132466879 132466879 G C EP400 Missense_Mutation p.K595N 0.22 unknown(0) TCGA-XF-AAMT-01 12 44902652 44902652 C G NELL2 3'UTR 0.21 TCGA-XF-AAMT-01 12 49427498 49427502 GTGCC - KMT2D Frame_Shift_Del p.M3662Ifs*11 0.22 TCGA-XF-AAMT-01 12 56077752 56077752 C T METTL7B Silent p.S218S 0.27 TCGA-XF-AAMT-01 12 58022862 58022862 C A B4GALNT1 Silent p.R260R 0.33 TCGA-XF-AAMT-01 12 7177629 7177629 C T C1S Missense_Mutation p.R581C 0.33 tolerated(0.18) possibly_damaging(0.806) TCGA-XF-AAMT-01 12 89744426 89744426 G A DUSP6 Silent p.P259P 0.22 TCGA-XF-AAMT-01 13 112722279 112722279 G T SOX1 Nonsense_Mutation p.E103* 0.24 TCGA-XF-AAMT-01 13 19999122 19999122 G T TPTE2 Missense_Mutation p.F477L 0.17 deleterious(0) possibly_damaging(0.7) TCGA-XF-AAMT-01 13 53039686 53039686 G C CKAP2 Intron 0.16 TCGA-XF-AAMT-01 14 105716181 105716181 C T BTBD6 Silent p.V210V 0.18 TCGA-XF-AAMT-01 14 56133956 56133956 T G KTN1 Intron 0.37 TCGA-XF-AAMT-01 14 61442367 61442367 C G TRMT5 Missense_Mutation p.D424H 0.45 tolerated(0.38) benign(0.005) TCGA-XF-AAMT-01 14 61442508 61442508 C G TRMT5 Missense_Mutation p.E377Q 0.28 deleterious(0.04) possibly_damaging(0.61) TCGA-XF-AAMT-01 14 75988998 75988998 G C BATF 5'UTR 0.19 TCGA-XF-AAMT-01 16 1642250 1642250 C A IFT140 Missense_Mutation p.K187N 0.31 tolerated(0.07) benign(0.003) TCGA-XF-AAMT-01 16 21213484 21213484 G A ZP2 Nonsense_Mutation p.Q410* 0.18 TCGA-XF-AAMT-01 16 27226311 27226311 C G KDM8 Missense_Mutation p.S298R 0.31 tolerated(0.23) benign(0.005) TCGA-XF-AAMT-01 16 3808853 3808853 A T CREBBP Splice_Site p.X1123_splice 0.25 TCGA-XF-AAMT-01 16 4747337 4747337 T A ANKS3 Missense_Mutation p.M631L 0.07 tolerated_low_confidence(0.28) benign(0.003) TCGA-XF-AAMT-01 16 57059520 57059520 G A NLRC5 Missense_Mutation p.R222K 0.27 tolerated(0.38) benign(0.051) TCGA-XF-AAMT-01 16 84092935 84092935 G C MBTPS1 Missense_Mutation p.P935A 0.31 deleterious(0.04) benign(0.062) TCGA-XF-AAMT-01 16 84092936 84092936 C T MBTPS1 Silent p.K934K 0.29 TCGA-XF-AAMT-01 17 10405120 10405120 C G MYH1 Missense_Mutation p.E1074Q 0.23 deleterious(0.02) probably_damaging(1) TCGA-XF-AAMT-01 17 36483543 36483543 G T GPR179 Missense_Mutation p.S1970Y 0.37 tolerated(0.38) possibly_damaging(0.51) TCGA-XF-AAMT-01 17 48745185 48745185 C T ABCC3 Intron 0.21 TCGA-XF-AAMT-01 17 55184152 55184152 C T AKAP1 Silent p.L443L 0.26 TCGA-XF-AAMT-01 17 55184265 55184265 C G AKAP1 Missense_Mutation p.I480M 0.29 tolerated(0.16) benign(0.416) TCGA-XF-AAMT-01 17 56603055 56603055 C T SEPT4 Splice_Site p.X195_splice 0.25 TCGA-XF-AAMT-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.41 deleterious(0) probably_damaging(0.985) TCGA-XF-AAMT-01 18 13087598 13087598 T A CEP192 Silent p.T1982T 0.26 TCGA-XF-AAMT-01 19 10659603 10659603 C G ATG4D Missense_Mutation p.L287V 0.20 tolerated(0.08) possibly_damaging(0.863) TCGA-XF-AAMT-01 19 11559988 11559988 A C PRKCSH Missense_Mutation p.T480P 0.20 tolerated(0.07) probably_damaging(0.91) TCGA-XF-AAMT-01 19 12805724 12805724 G A FBXW9 Silent p.C146C 0.41 TCGA-XF-AAMT-01 19 18119170 18119170 C T ARRDC2 Silent p.T17T 0.13 TCGA-XF-AAMT-01 19 44636612 44636612 G C ZNF225 Missense_Mutation p.Q615H 0.22 tolerated(0.06) benign(0.035) TCGA-XF-AAMT-01 19 49216976 49216976 C T MAMSTR Missense_Mutation p.D321N 0.30 tolerated_low_confidence(0.14) possibly_damaging(0.539) TCGA-XF-AAMT-01 19 50881476 50881476 C T NR1H2 Silent p.H84H 0.25 TCGA-XF-AAMT-01 19 52091167 52091167 A G ZNF175 Missense_Mutation p.E528G 0.21 deleterious(0) probably_damaging(0.994) TCGA-XF-AAMT-01 19 9296802 9296802 G C OR7D2 Silent p.L115L 0.30 TCGA-XF-AAMT-01 1 111492503 111492504 CT - LRIF1 Frame_Shift_Del p.E613Vfs*14 0.13 TCGA-XF-AAMT-01 1 114514536 114514536 G A HIPK1 Missense_Mutation p.R1035H 0.36 deleterious(0) possibly_damaging(0.905) TCGA-XF-AAMT-01 1 198288670 198288670 G C NEK7 3'UTR 0.14 TCGA-XF-AAMT-01 1 202910771 202910771 T A ADIPOR1 Missense_Mutation p.Y353F 0.23 deleterious(0) possibly_damaging(0.536) TCGA-XF-AAMT-01 1 202910772 202910772 A T ADIPOR1 Missense_Mutation p.Y353N 0.23 deleterious(0) benign(0.091) TCGA-XF-AAMT-01 1 203668676 203668676 C G ATP2B4 Missense_Mutation p.I160M 0.30 deleterious(0.01) possibly_damaging(0.564) TCGA-XF-AAMT-01 1 24696235 24696235 C A STPG1 Silent p.T222T 0.20 TCGA-XF-AAMT-01 20 2641326 2641326 A C IDH3B Intron 0.26 TCGA-XF-AAMT-01 20 30037909 30037909 T C DEFB123 Missense_Mutation p.C46R 0.11 deleterious(0) probably_damaging(0.989) TCGA-XF-AAMT-01 20 30037911 30037911 C G DEFB123 Missense_Mutation p.C46W 0.12 deleterious(0) probably_damaging(0.989) TCGA-XF-AAMT-01 20 30037912 30037912 A T DEFB123 Missense_Mutation p.I47L 0.12 tolerated(0.8) unknown(0) TCGA-XF-AAMT-01 20 35668610 35668610 G C RBL1 Missense_Mutation p.L617V 0.18 tolerated(0.34) benign(0.008) TCGA-XF-AAMT-01 20 57766703 57766707 GGGGC - ZNF831 Frame_Shift_Del p.G211Pfs*88 0.17 TCGA-XF-AAMT-01 20 62178709 62178710 GG T SRMS Frame_Shift_Del p.P36Qfs*35 0.22 TCGA-XF-AAMT-01 21 34959902 34959902 C G DONSON Missense_Mutation p.D110H 0.09 deleterious(0.03) benign(0.013) TCGA-XF-AAMT-01 21 43319171 43319171 T G C2CD2 Missense_Mutation p.K621Q 0.19 deleterious(0) probably_damaging(0.935) TCGA-XF-AAMT-01 2 105858930 105858930 C T GPR45 Silent p.F205F 0.13 TCGA-XF-AAMT-01 2 11964949 11964949 A T LPIN1 3'UTR 0.53 TCGA-XF-AAMT-01 2 133542765 133542765 C T NCKAP5 Missense_Mutation p.C540Y 0.21 tolerated(0.56) benign(0.016) TCGA-XF-AAMT-01 2 175337920 175337920 G T GPR155 Silent p.L211L 0.09 TCGA-XF-AAMT-01 2 183387019 183387019 G T PDE1A Missense_Mutation p.Q29K 0.19 tolerated_low_confidence(0.43) benign(0.006) TCGA-XF-AAMT-01 2 227924263 227924263 G A COL4A4 Silent p.P747P 0.30 TCGA-XF-AAMT-01 2 229890309 229890309 G A PID1 3'UTR 0.25 TCGA-XF-AAMT-01 2 230911284 230911284 G A SLC16A14 Silent p.Y186Y 0.06 TCGA-XF-AAMT-01 2 28843193 28843193 C G PLB1 Missense_Mutation p.S1126C 0.14 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMT-01 2 89544302 89544302 C A IGKV2-30 Missense_Mutation p.V108F 0.11 tolerated(0.11) benign(0.138) TCGA-XF-AAMT-01 2 96930910 96930910 G A TMEM127 Silent p.D70D 0.33 TCGA-XF-AAMT-01 3 108788599 108788599 G T MORC1 Missense_Mutation p.P232Q 0.10 deleterious(0) possibly_damaging(0.907) TCGA-XF-AAMT-01 3 141678556 141678556 C T TFDP2 Silent p.A337A 0.05 TCGA-XF-AAMT-01 3 183777997 183777997 G C HTR3C Missense_Mutation p.D401H 0.37 tolerated(0.4) benign(0.004) TCGA-XF-AAMT-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.28 tolerated(0.19) possibly_damaging(0.569) TCGA-XF-AAMT-01 3 42676797 42676797 G A NKTR Missense_Mutation p.E368K 0.35 deleterious_low_confidence(0) unknown(0) TCGA-XF-AAMT-01 3 51967512 51967522 GATAAGAGTGT - RRP9 Missense_Mutation 0.33 TCGA-XF-AAMT-01 3 52418832 52418832 G A DNAH1 Missense_Mutation p.V2785M 0.55 probably_damaging(0.991) TCGA-XF-AAMT-01 3 56605255 56605257 ATG - CCDC66 In_Frame_Del p.W288del 0.38 TCGA-XF-AAMT-01 3 58855933 58855933 G C C3orf67 Missense_Mutation p.S148C 0.55 deleterious(0.02) benign(0.162) TCGA-XF-AAMT-01 3 64601059 64601059 C A ADAMTS9 Missense_Mutation p.V1043F 0.40 tolerated(0.05) possibly_damaging(0.493) TCGA-XF-AAMT-01 4 159789560 159789560 A T FNIP2 Missense_Mutation p.H591L 0.30 tolerated(0.21) benign(0) TCGA-XF-AAMT-01 4 187530334 187530335 TA - FAT1 Splice_Site p.X3402_splice 0.38 TCGA-XF-AAMT-01 4 66213848 66213866 ACATCACTGGCAGAAGTAA - EPHA5 Frame_Shift_Del p.F855Sfs*6 0.28 TCGA-XF-AAMT-01 4 77661352 77661352 A C SHROOM3 Missense_Mutation p.S676R 0.09 deleterious(0.01) possibly_damaging(0.708) TCGA-XF-AAMT-01 4 94693316 94693316 C A GRID2 Silent p.T897T 0.05 TCGA-XF-AAMT-01 5 16465345 16465345 G T ZNF622 Missense_Mutation p.P144T 0.33 tolerated(0.09) possibly_damaging(0.839) TCGA-XF-AAMT-01 5 96244818 96244818 C A ERAP2 Silent p.L722L 0.44 TCGA-XF-AAMT-01 6 105405077 105405077 G A LIN28B 5'UTR 0.21 TCGA-XF-AAMT-01 6 109803086 109803086 G A ZBTB24 Silent p.F48F 0.18 TCGA-XF-AAMT-01 6 112476781 112476781 C T LAMA4 Missense_Mutation p.D649N 0.27 tolerated(0.4) benign(0.005) TCGA-XF-AAMT-01 6 117663566 117663566 C T ROS1 Missense_Mutation p.G1556R 0.28 deleterious(0) probably_damaging(1) TCGA-XF-AAMT-01 6 131958597 131958607 TGCATTGTAAG - ENPP3 Splice_Site p.X25_splice 0.13 TCGA-XF-AAMT-01 6 152804295 152804295 C G SYNE1 Silent p.L425L 0.28 TCGA-XF-AAMT-01 6 29142124 29142124 G T OR2J2 Missense_Mutation p.V238L 0.30 deleterious(0.02) benign(0.03) TCGA-XF-AAMT-01 6 42224567 42224567 C G TRERF1 Missense_Mutation p.E827Q 0.24 deleterious(0.04) possibly_damaging(0.728) TCGA-XF-AAMT-01 6 42224703 42224703 C G TRERF1 Missense_Mutation p.R825T 0.10 tolerated(0.09) possibly_damaging(0.537) TCGA-XF-AAMT-01 6 42224725 42224725 C G TRERF1 Missense_Mutation p.E818Q 0.08 deleterious(0.01) possibly_damaging(0.728) TCGA-XF-AAMT-01 6 42224820 42224820 C T TRERF1 Missense_Mutation p.R786K 0.18 deleterious(0.04) benign(0.22) TCGA-XF-AAMT-01 6 50011361 50011361 G T DEFB112 Missense_Mutation p.T90K 0.30 tolerated(0.63) possibly_damaging(0.557) TCGA-XF-AAMT-01 6 88767426 88767426 G A SPACA1 Missense_Mutation p.C121Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMT-01 7 11675950 11675950 G A THSD7A Missense_Mutation p.R277C 0.34 deleterious(0.01) possibly_damaging(0.816) TCGA-XF-AAMT-01 7 117385904 117385904 T A CTTNBP2 Silent p.L1172L 0.12 TCGA-XF-AAMT-01 7 142104370 142104370 A T TRBV6-9 Missense_Mutation p.L32Q 0.42 tolerated(0.31) benign(0.212) TCGA-XF-AAMT-01 7 142378869 142378869 T C MTRNR2L6 3'Flank 0.15 TCGA-XF-AAMT-01 7 143175355 143175355 G T TAS2R41 Silent p.V130V 0.12 TCGA-XF-AAMT-01 7 151664463 151664463 A C GALNTL5 Silent p.S44S 0.43 TCGA-XF-AAMT-01 7 151874111 151874112 TT A KMT2C Frame_Shift_Del p.K2809Ifs*14 0.24 TCGA-XF-AAMT-01 7 16502237 16502237 T C SOSTDC1 Missense_Mutation p.K186R 0.45 tolerated(0.39) probably_damaging(0.992) TCGA-XF-AAMT-01 7 37298953 37298953 A C ELMO1 Silent p.A82A 0.36 TCGA-XF-AAMT-01 7 4965126 4965126 G T MMD2 Missense_Mutation p.Q29K 0.42 tolerated(0.55) benign(0.005) TCGA-XF-AAMT-01 7 6474597 6474604 AAGAGGGT - DAGLB Frame_Shift_Del p.D156Gfs*17 0.35 TCGA-XF-AAMT-01 7 720190 720190 C T PRKAR1B Intron 0.26 TCGA-XF-AAMT-01 8 26238051 26238051 C G BNIP3L 5'Flank 0.27 TCGA-XF-AAMT-01 8 26238397 26238397 C T BNIP3L 5'Flank 0.41 TCGA-XF-AAMT-01 8 52321636 52321636 C T PXDNL Missense_Mutation p.A850T 0.17 tolerated(0.18) benign(0.004) TCGA-XF-AAMT-01 8 73479980 73479980 A T KCNB2 Missense_Mutation p.K4M 0.25 deleterious_low_confidence(0.02) probably_damaging(0.962) TCGA-XF-AAMT-01 8 92375759 92375759 T C SLC26A7 Missense_Mutation p.M494T 0.33 tolerated(0.58) benign(0.001) TCGA-XF-AAMT-01 9 131707839 131707839 G A DOLK 3'UTR 0.38 TCGA-XF-AAMT-01 9 136277437 136277437 G T REXO4 Missense_Mutation p.P298T 0.22 deleterious(0) probably_damaging(0.991) TCGA-XF-AAMT-01 9 139092446 139092446 C G LHX3 Missense_Mutation p.C83S 0.17 deleterious(0) probably_damaging(0.977) TCGA-XF-AAMT-01 9 40773305 40773305 G T ZNF658 Missense_Mutation p.P657H 0.18 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMT-01 9 73164573 73164573 C T TRPM3 Missense_Mutation p.D1186N 0.45 deleterious(0.02) probably_damaging(0.998) TCGA-XF-AAMT-01 9 8404587 8404587 G A PTPRD Missense_Mutation p.A1387V 0.14 deleterious(0) possibly_damaging(0.626) TCGA-XF-AAMT-01 9 92017904 92017904 G T SEMA4D Missense_Mutation p.P45Q 0.16 deleterious(0.04) benign(0.027) TCGA-XF-AAMT-01 X 107224560 107224560 G A TEX13B Missense_Mutation p.A230V 0.23 tolerated(0.3) benign(0.051) TCGA-XF-AAMT-01 X 150349203 150349203 C A GPR50 Missense_Mutation p.S383Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-XF-AAMT-01 X 151870250 151870250 G C MAGEA6 Missense_Mutation p.E314Q 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-XF-AAMT-01 X 153421925 153421925 C A OPN1LW Missense_Mutation p.P301T 0.14 tolerated(0.07) probably_damaging(1) TCGA-XF-AAMT-01 X 19009041 19009041 G T GPR64 Missense_Mutation p.R999S 0.27 deleterious_low_confidence(0.03) probably_damaging(0.949) TCGA-XF-AAMT-01 X 26158023 26158023 G C MAGEB18 Missense_Mutation p.L307F 0.22 deleterious(0) probably_damaging(0.953) TCGA-XF-AAMT-01 X 54584888 54584892 ATTGC - GNL3L Frame_Shift_Del p.C490Qfs*11 0.22 TCGA-XF-AAMT-01 X 63410258 63410258 G A AMER1 Missense_Mutation p.P970L 0.33 tolerated(0.34) benign(0.014) TCGA-XF-AAMT-01 X 67518914 67518914 A C OPHN1 Missense_Mutation p.F60C 0.14 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMW-01 10 27538361 27538361 C A RP11-85G18.6 Intron 0.34 TCGA-XF-AAMW-01 11 534285 534285 C A HRAS Missense_Mutation p.G13V 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-XF-AAMW-01 11 56143123 56143123 G A OR8U1 Silent p.Q8Q 0.36 TCGA-XF-AAMW-01 11 6220865 6220865 C T OR52W1 Missense_Mutation p.P138S 0.45 tolerated(1) benign(0.012) TCGA-XF-AAMW-01 14 105405446 105405446 G A AHNAK2 Missense_Mutation p.P5448S 0.25 benign(0.327) TCGA-XF-AAMW-01 14 23312527 23312527 C T MMP14 Silent p.S250S 0.32 TCGA-XF-AAMW-01 14 68229479 68229479 C T ZFYVE26 Silent p.V2023V 0.29 TCGA-XF-AAMW-01 14 74975940 74975940 C G LTBP2 Splice_Site p.X1135_splice 0.45 TCGA-XF-AAMW-01 16 51174119 51174119 C T SALL1 Missense_Mutation p.A672T 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-XF-AAMW-01 17 40914875 40914875 C G RAMP2 3'UTR 0.16 TCGA-XF-AAMW-01 17 7576891 7576891 T A TP53 Nonsense_Mutation p.K319* 0.62 TCGA-XF-AAMW-01 18 29867319 29867319 G A GAREM Missense_Mutation p.A414V 0.35 tolerated(0.17) benign(0.001) TCGA-XF-AAMW-01 18 49867118 49867118 G A DCC 5'UTR 0.17 TCGA-XF-AAMW-01 18 67345052 67345052 C A DOK6 Silent p.P124P 0.34 TCGA-XF-AAMW-01 19 3653479 3653479 G A PIP5K1C Missense_Mutation p.R244C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAMW-01 19 56041201 56041201 T C SBK2 Missense_Mutation p.S316G 0.28 tolerated(0.55) benign(0.003) TCGA-XF-AAMW-01 19 58806614 58806614 T C ZNF8 Silent p.S480S 0.34 TCGA-XF-AAMW-01 19 677792 677792 G A FSTL3 Missense_Mutation p.G35D 0.35 deleterious(0) benign(0.439) TCGA-XF-AAMW-01 1 153751171 153751171 G A SLC27A3 Missense_Mutation p.G533R 0.35 deleterious(0) probably_damaging(1) TCGA-XF-AAMW-01 1 15844669 15844669 T C CASP9 Silent p.P118P 0.36 TCGA-XF-AAMW-01 1 46976759 46976759 C T DMBX1 Silent p.P162P 0.29 TCGA-XF-AAMW-01 20 23965905 23965905 C A GGTLC1 Missense_Mutation p.G209V 0.18 tolerated(0.16) probably_damaging(0.93) TCGA-XF-AAMW-01 20 61292465 61292465 G A SLCO4A1 Silent p.K353K 0.26 TCGA-XF-AAMW-01 22 26877751 26877751 C A HPS4 5'UTR 0.35 TCGA-XF-AAMW-01 22 37602578 37602578 C T SSTR3 3'UTR 0.25 TCGA-XF-AAMW-01 22 42269825 42269825 C T SREBF2 Silent p.T297T 0.40 TCGA-XF-AAMW-01 2 56094269 56094269 C T EFEMP1 Missense_Mutation p.G474E 0.34 deleterious(0.02) possibly_damaging(0.563) TCGA-XF-AAMW-01 2 75891860 75891860 T G GCFC2 Missense_Mutation p.N760H 0.30 tolerated(0.42) benign(0.033) TCGA-XF-AAMW-01 3 11468324 11468324 T - ATG7 Frame_Shift_Del p.V668Gfs*9 0.20 TCGA-XF-AAMW-01 3 13522848 13522848 T A HDAC11 Missense_Mutation p.H35Q 0.14 deleterious(0) probably_damaging(1) TCGA-XF-AAMW-01 3 37396630 37396630 T C GOLGA4 Silent p.P2220P 0.23 TCGA-XF-AAMW-01 4 144106956 144106956 C A USP38 Missense_Mutation p.P118Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMW-01 4 37841802 37841802 A G PGM2 Missense_Mutation p.S214G 0.25 tolerated(0.48) benign(0) TCGA-XF-AAMW-01 5 137222946 137222946 C T MYOT Nonsense_Mutation p.R457* 0.30 TCGA-XF-AAMW-01 5 140602962 140602962 C T PCDHB14 5'Flank 0.29 TCGA-XF-AAMW-01 5 70939667 70939667 A G MCCC2 Missense_Mutation p.Y365C 0.30 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-XF-AAMW-01 5 72469026 72469026 A T TMEM174 5'UTR 0.05 TCGA-XF-AAMW-01 6 105177562 105177562 C T HACE1 Missense_Mutation p.G902D 0.40 deleterious(0) probably_damaging(1) TCGA-XF-AAMW-01 6 132966320 132966320 G C TAAR1 Missense_Mutation p.P275A 0.26 tolerated(0.06) probably_damaging(0.984) TCGA-XF-AAMW-01 6 169641993 169641993 G T THBS2 Missense_Mutation p.T252N 0.48 deleterious_low_confidence(0) benign(0.197) TCGA-XF-AAMW-01 7 134878389 134878389 G C WDR91 Silent p.L477L 0.10 TCGA-XF-AAMW-01 9 112200395 112200395 T G PTPN3 Missense_Mutation p.S196R 0.16 tolerated(0.74) benign(0.049) TCGA-XF-AAMX-01 10 105217991 105217991 C T CALHM1 Missense_Mutation p.R173Q 0.39 deleterious(0.02) benign(0.021) TCGA-XF-AAMX-01 10 105361888 105361888 C T SH3PXD2A Silent p.K1001K 0.31 TCGA-XF-AAMX-01 10 11060047 11060047 G A CELF2 5'UTR 0.33 TCGA-XF-AAMX-01 10 111883853 111883853 G A ADD3 Missense_Mutation p.A408T 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAMX-01 10 120514104 120514104 C T CACUL1 Silent p.L57L 0.21 TCGA-XF-AAMX-01 10 12149955 12149955 C G DHTKD1 Missense_Mutation p.H699D 0.44 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMX-01 10 121551642 121551642 G A INPP5F Intron 0.67 TCGA-XF-AAMX-01 10 128974213 128974213 C G FAM196A Missense_Mutation p.E149D 0.35 tolerated(0.86) benign(0.008) TCGA-XF-AAMX-01 10 135111462 135111462 G T TUBGCP2 Missense_Mutation p.P204T 0.53 tolerated(0.05) benign(0.068) TCGA-XF-AAMX-01 10 14913620 14913620 C G HSPA14 3'UTR 0.30 TCGA-XF-AAMX-01 10 30658089 30658089 C T AL161651.1 5'Flank 0.75 TCGA-XF-AAMX-01 10 33474568 33474568 C G NRP1 Missense_Mutation p.E807Q 0.30 tolerated(0.13) benign(0.06) TCGA-XF-AAMX-01 10 35896548 35896548 T C GJD4 Missense_Mutation p.V36A 0.36 deleterious(0.02) probably_damaging(0.964) TCGA-XF-AAMX-01 10 60544833 60544833 A T BICC1 Missense_Mutation p.D127V 0.39 deleterious(0) benign(0.328) TCGA-XF-AAMX-01 10 61834292 61834292 G A ANK3 Missense_Mutation p.S2116F 0.38 probably_damaging(0.979) TCGA-XF-AAMX-01 10 61834866 61834866 C G ANK3 Missense_Mutation p.E1925Q 0.42 probably_damaging(0.968) TCGA-XF-AAMX-01 10 74886448 74886448 A G NUDT13 Missense_Mutation p.T241A 0.42 tolerated(1) benign(0.012) TCGA-XF-AAMX-01 10 75406786 75406786 G A SYNPO2L Missense_Mutation p.A875V 0.38 tolerated(0.19) benign(0.021) TCGA-XF-AAMX-01 10 82276014 82276014 G C TSPAN14 Missense_Mutation p.E226Q 0.35 deleterious(0.02) probably_damaging(1) TCGA-XF-AAMX-01 10 91178053 91178053 G A IFIT5 Missense_Mutation p.R366H 0.71 tolerated(0.22) benign(0.001) TCGA-XF-AAMX-01 10 97602249 97602249 C G ENTPD1 Silent p.L149L 0.74 TCGA-XF-AAMX-01 10 98764523 98764523 C T SLIT1 Missense_Mutation p.A1213T 0.69 deleterious(0) probably_damaging(0.92) TCGA-XF-AAMX-01 10 98989613 98989613 G T ARHGAP19 Missense_Mutation p.Q435K 0.59 tolerated(0.55) benign(0.005) TCGA-XF-AAMX-01 10 99968657 99968657 A T R3HCC1L Silent p.G262G 0.74 TCGA-XF-AAMX-01 11 112071409 112071409 A C BCO2 Missense_Mutation p.K313N 0.39 tolerated(0.12) benign(0.367) TCGA-XF-AAMX-01 11 117710495 117710495 C A FXYD6 Splice_Site 0.26 TCGA-XF-AAMX-01 11 118221394 118221394 G A CD3G Silent p.S145S 0.88 TCGA-XF-AAMX-01 11 122817458 122817458 A G C11orf63 Silent p.Q629Q 0.26 TCGA-XF-AAMX-01 11 123477480 123477480 G A GRAMD1B Missense_Mutation p.S353N 0.76 tolerated(0.14) possibly_damaging(0.51) TCGA-XF-AAMX-01 11 194461 194461 G A SCGB1C1 3'UTR 0.20 TCGA-XF-AAMX-01 11 33127546 33127546 G T CSTF3 Missense_Mutation p.Q141K 0.75 tolerated(0.25) benign(0.009) TCGA-XF-AAMX-01 11 33886238 33886238 C A LMO2 Missense_Mutation p.S125I 0.72 deleterious(0.01) possibly_damaging(0.653) TCGA-XF-AAMX-01 11 57322055 57322055 G A UBE2L6 Silent p.I55I 0.84 TCGA-XF-AAMX-01 11 63978797 63978797 G A FERMT3 Missense_Mutation p.A189T 0.74 tolerated(0.23) benign(0.001) TCGA-XF-AAMX-01 11 64572092 64572093 - G MEN1 Frame_Shift_Ins p.R521Pfs*15 0.50 TCGA-XF-AAMX-01 11 73008610 73008610 C A P2RY6 3'UTR 0.50 TCGA-XF-AAMX-01 11 78369213 78369213 C A TENM4 Missense_Mutation p.V2734L 0.40 tolerated(0.06) possibly_damaging(0.539) TCGA-XF-AAMX-01 11 92258054 92258054 C G FAT3 Missense_Mutation p.L1183V 0.42 possibly_damaging(0.859) TCGA-XF-AAMX-01 11 9462158 9462158 A G IPO7 Missense_Mutation p.D951G 0.41 tolerated(0.15) possibly_damaging(0.87) TCGA-XF-AAMX-01 12 100813864 100813864 G C SLC17A8 Missense_Mutation p.R566T 0.86 deleterious_low_confidence(0.03) benign(0.001) TCGA-XF-AAMX-01 12 104121046 104121046 A G STAB2 Missense_Mutation p.E1618G 0.43 tolerated(0.24) possibly_damaging(0.781) TCGA-XF-AAMX-01 12 108912308 108912308 G A FICD Missense_Mutation p.E145K 0.88 tolerated(0.27) benign(0.126) TCGA-XF-AAMX-01 12 108917337 108917337 G C SART3 Missense_Mutation p.A930G 0.84 tolerated(0.17) benign(0.283) TCGA-XF-AAMX-01 12 113603828 113603828 C T DDX54 Missense_Mutation p.G475D 0.30 tolerated(1) benign(0.001) TCGA-XF-AAMX-01 12 117662863 117662863 G A NOS1 Nonsense_Mutation p.R1296* 0.26 TCGA-XF-AAMX-01 12 117728213 117728213 G A NOS1 Nonsense_Mutation p.Q291* 0.25 TCGA-XF-AAMX-01 12 121434205 121434205 G C HNF1A Missense_Mutation p.E366Q 0.67 tolerated(0.1) benign(0.028) TCGA-XF-AAMX-01 12 121476643 121476643 C G OASL Silent p.L44L 0.52 TCGA-XF-AAMX-01 12 123035910 123035913 GTAG - KNTC1 Splice_Site p.X377_splice 0.37 TCGA-XF-AAMX-01 12 14839133 14839133 G C GUCY2C Silent p.L119L 0.65 TCGA-XF-AAMX-01 12 3046852 3046852 G C TULP3 Missense_Mutation p.G327A 0.96 tolerated(0.06) benign(0.13) TCGA-XF-AAMX-01 12 3104097 3104097 C A TEAD4 Silent p.L55L 0.14 TCGA-XF-AAMX-01 12 46325293 46325293 A C SCAF11 Missense_Mutation p.H279Q 0.20 deleterious(0) benign(0.011) TCGA-XF-AAMX-01 12 49225951 49225951 G C DDX23 Missense_Mutation p.I658M 0.85 deleterious(0) benign(0.206) TCGA-XF-AAMX-01 12 56492346 56492346 T C ERBB3 Silent p.D893D 0.30 TCGA-XF-AAMX-01 12 59271356 59271356 G C LRIG3 Missense_Mutation p.P788A 0.63 tolerated(0.08) benign(0.196) TCGA-XF-AAMX-01 12 63544067 63544067 G T AVPR1A Missense_Mutation p.P184T 0.14 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMX-01 12 8211912 8211912 G C C3AR1 Silent p.L290L 0.87 TCGA-XF-AAMX-01 12 8374889 8374889 C G FAM90A1 Silent p.P308P 0.79 TCGA-XF-AAMX-01 12 996418 996418 G C WNK1 Missense_Mutation p.G1771A 0.78 tolerated(0.2) benign(0.326) TCGA-XF-AAMX-01 13 51826227 51826227 C G FAM124A Missense_Mutation p.R278G 0.83 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 14 103371850 103371850 G A TRAF3 Missense_Mutation p.R479H 0.71 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMX-01 14 104642804 104642804 C G KIF26A Missense_Mutation p.R1227G 0.80 tolerated(0.15) benign(0.32) TCGA-XF-AAMX-01 14 20403825 20403825 C T OR4K1 5'UTR 0.35 TCGA-XF-AAMX-01 14 22476146 22476146 C G TRAV19 Missense_Mutation p.Q26E 0.77 deleterious(0) probably_damaging(0.992) TCGA-XF-AAMX-01 14 35782199 35782199 G C PSMA6 Missense_Mutation p.E174D 0.12 deleterious(0.04) benign(0.03) TCGA-XF-AAMX-01 14 64545301 64545301 G C SYNE2 Missense_Mutation p.E3714Q 0.45 probably_damaging(0.922) TCGA-XF-AAMX-01 14 68257479 68257479 C T ZFYVE26 Silent p.T855T 0.80 TCGA-XF-AAMX-01 14 73957770 73957770 G A HEATR4 Intron 0.88 TCGA-XF-AAMX-01 14 74824840 74824840 C T VRTN Missense_Mutation p.P452S 0.10 tolerated(0.28) benign(0.272) TCGA-XF-AAMX-01 14 76045641 76045641 A G FLVCR2 Missense_Mutation p.N109S 0.60 tolerated(0.99) benign(0.006) TCGA-XF-AAMX-01 14 92953091 92953091 G C SLC24A4 Missense_Mutation p.D502H 0.78 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMX-01 14 94089138 94089138 C G UNC79 Silent p.L1676L 0.86 TCGA-XF-AAMX-01 15 25326441 25326441 T G SNORD116-15 RNA 0.15 TCGA-XF-AAMX-01 15 28387389 28387389 C G HERC2 Missense_Mutation p.D3899H 0.26 benign(0.011) TCGA-XF-AAMX-01 15 39884917 39884917 G T THBS1 Missense_Mutation p.C894F 0.26 deleterious(0) probably_damaging(0.979) TCGA-XF-AAMX-01 15 41794269 41794269 T C ITPKA Missense_Mutation p.L293P 0.24 deleterious(0) possibly_damaging(0.829) TCGA-XF-AAMX-01 15 43045158 43045158 A G TTBK2 Silent p.H762H 0.66 TCGA-XF-AAMX-01 15 50534321 50534321 G A HDC 3'UTR 0.21 TCGA-XF-AAMX-01 15 51520110 51520110 A G CYP19A1 Missense_Mutation p.I106T 0.49 deleterious(0) possibly_damaging(0.879) TCGA-XF-AAMX-01 15 75119126 75119126 G A CPLX3 Missense_Mutation p.D28N 0.64 tolerated(0.13) benign(0.057) TCGA-XF-AAMX-01 15 84581895 84581895 G T ADAMTSL3 Silent p.V584V 0.40 TCGA-XF-AAMX-01 15 86087181 86087181 A G AKAP13 Silent p.L219L 0.53 TCGA-XF-AAMX-01 15 88726689 88726689 G C NTRK3 Missense_Mutation p.Q119E 0.85 tolerated(0.12) benign(0.06) TCGA-XF-AAMX-01 15 92981717 92981717 T C ST8SIA2 Missense_Mutation p.L142P 0.51 probably_damaging(0.992) TCGA-XF-AAMX-01 15 97328285 97328285 T C SPATA8 Missense_Mutation p.S86P 0.44 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-XF-AAMX-01 16 16184341 16184341 C G ABCC1 Missense_Mutation p.S847C 0.28 deleterious(0) possibly_damaging(0.841) TCGA-XF-AAMX-01 16 19653728 19653728 G T C16orf62 Nonsense_Mutation p.E688* 0.28 TCGA-XF-AAMX-01 16 20423011 20423011 G A ACSM5 Splice_Site p.X68_splice 0.19 TCGA-XF-AAMX-01 16 20482506 20482506 G A ACSM2A Silent p.S236S 0.29 TCGA-XF-AAMX-01 16 23647174 23647174 T A PALB2 Missense_Mutation p.K231N 0.29 tolerated(0.09) benign(0.01) TCGA-XF-AAMX-01 16 27781290 27781290 C T KIAA0556 Missense_Mutation p.L1362F 0.28 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMX-01 16 2882135 2882135 C A ZG16B Nonsense_Mutation p.S201* 0.39 TCGA-XF-AAMX-01 16 29912852 29912852 C A ASPHD1 Missense_Mutation p.P187Q 0.26 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 16 30740697 30740697 C T SRCAP Silent p.I1977I 0.67 TCGA-XF-AAMX-01 16 3632546 3632546 G C SLX4 Missense_Mutation p.Q1768E 0.30 deleterious(0.01) benign(0.011) TCGA-XF-AAMX-01 16 4242609 4242609 C T SRL Missense_Mutation p.E323K 0.45 deleterious(0.02) possibly_damaging(0.866) TCGA-XF-AAMX-01 16 4935421 4935421 G A PPL Missense_Mutation p.R1079C 0.39 deleterious(0.04) benign(0.003) TCGA-XF-AAMX-01 16 67682983 67682983 C T RLTPR Silent p.F532F 0.69 TCGA-XF-AAMX-01 16 67683016 67683016 C A RLTPR Silent p.I543I 0.72 TCGA-XF-AAMX-01 16 67683403 67683403 C T RLTPR Silent p.V600V 0.54 TCGA-XF-AAMX-01 16 67683409 67683409 C T RLTPR Silent p.L602L 0.54 TCGA-XF-AAMX-01 16 67683513 67683513 C G RLTPR Missense_Mutation p.S637W 0.67 deleterious(0) possibly_damaging(0.6) TCGA-XF-AAMX-01 16 67686420 67686420 C A RLTPR Missense_Mutation p.H955N 0.59 tolerated(0.4) benign(0.063) TCGA-XF-AAMX-01 16 67686428 67686428 C A RLTPR Silent p.V957V 0.61 TCGA-XF-AAMX-01 16 67686434 67686434 C A RLTPR Missense_Mutation p.F959L 0.62 tolerated(0.65) benign(0.016) TCGA-XF-AAMX-01 16 67688278 67688278 C G RLTPR Missense_Mutation p.P1089A 0.78 deleterious(0.03) probably_damaging(0.997) TCGA-XF-AAMX-01 16 67693322 67693322 G A ACD Silent p.C224C 0.38 TCGA-XF-AAMX-01 16 67693694 67693694 C A ACD Nonsense_Mutation p.E169* 0.68 TCGA-XF-AAMX-01 16 67694366 67694366 G A ACD Nonsense_Mutation p.Q6* 0.59 TCGA-XF-AAMX-01 16 67695000 67695000 G C PARD6A Missense_Mutation p.S20T 0.77 deleterious(0.05) benign(0.348) TCGA-XF-AAMX-01 16 67696119 67696119 G A PARD6A Missense_Mutation p.E204K 0.54 deleterious(0) possibly_damaging(0.625) TCGA-XF-AAMX-01 16 67696371 67696371 G A PARD6A Missense_Mutation p.E288K 0.60 deleterious(0) benign(0.022) TCGA-XF-AAMX-01 16 70359531 70359531 G C DDX19B Missense_Mutation p.E183Q 0.64 tolerated(0.3) benign(0.011) TCGA-XF-AAMX-01 16 7760721 7760721 G T RBFOX1 Nonsense_Mutation p.G411* 0.42 TCGA-XF-AAMX-01 16 88725111 88725111 C T MVD Missense_Mutation p.E30K 0.61 tolerated(0.87) benign(0.001) TCGA-XF-AAMX-01 17 15162449 15162449 G A PMP22 Missense_Mutation p.S47L 0.32 tolerated(0.17) benign(0.001) TCGA-XF-AAMX-01 17 17696605 17696605 G A RAI1 Missense_Mutation p.E115K 0.53 deleterious(0) possibly_damaging(0.831) TCGA-XF-AAMX-01 17 17786071 17786071 G A TOM1L2 Missense_Mutation p.P203L 0.26 deleterious(0.03) benign(0.005) TCGA-XF-AAMX-01 17 18010574 18010574 C T DRG2 3'UTR 0.29 TCGA-XF-AAMX-01 17 18111582 18111582 C G ALKBH5 Missense_Mutation p.L353V 0.22 tolerated_low_confidence(0.13) possibly_damaging(0.52) TCGA-XF-AAMX-01 17 26678780 26678780 C G POLDIP2 Missense_Mutation p.K222N 0.50 deleterious(0.01) possibly_damaging(0.791) TCGA-XF-AAMX-01 17 27062257 27062257 G A NEK8 Splice_Site p.X163_splice 0.28 TCGA-XF-AAMX-01 17 32598719 32598719 C G CCL7 Missense_Mutation p.F66L 0.78 deleterious(0.02) possibly_damaging(0.572) TCGA-XF-AAMX-01 17 35834661 35834661 G A TADA2A Missense_Mutation p.G358D 0.77 tolerated(0.16) benign(0.081) TCGA-XF-AAMX-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.82 deleterious(0) probably_damaging(0.994) TCGA-XF-AAMX-01 17 41215352 41215352 C A BRCA1 Nonsense_Mutation p.E1752* 0.81 TCGA-XF-AAMX-01 17 41219632 41219632 C T BRCA1 Missense_Mutation p.M1710I 1.00 tolerated(0.09) benign(0.022) TCGA-XF-AAMX-01 17 41223131 41223131 C T BRCA1 Silent p.L1621L 0.91 TCGA-XF-AAMX-01 17 41223190 41223190 C T BRCA1 Missense_Mutation p.E1602K 0.94 tolerated(0.15) benign(0.292) TCGA-XF-AAMX-01 17 42335371 42335371 G T SLC4A1 Missense_Mutation p.T422N 0.45 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMX-01 17 5383885 5383885 C T DERL2 Silent p.V115V 0.91 TCGA-XF-AAMX-01 17 56584505 56584505 C T MTMR4 Missense_Mutation p.E281K 0.28 deleterious(0.03) possibly_damaging(0.887) TCGA-XF-AAMX-01 17 56586079 56586079 C G MTMR4 Silent p.L139L 0.17 TCGA-XF-AAMX-01 17 56646588 56646588 A G TEX14 Missense_Mutation p.L1330P 0.12 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 17 59001863 59001863 T A BCAS3 Splice_Site p.X363_splice 0.10 TCGA-XF-AAMX-01 17 60059951 60059951 G A MED13 Missense_Mutation p.S1138L 0.13 deleterious(0) possibly_damaging(0.554) TCGA-XF-AAMX-01 17 62547774 62547774 C A SMURF2 Missense_Mutation p.L599F 0.15 deleterious(0.05) probably_damaging(0.967) TCGA-XF-AAMX-01 17 63200395 63200395 C A RGS9 Silent p.T393T 0.12 TCGA-XF-AAMX-01 17 63554681 63554681 C T AXIN2 Missense_Mutation p.D20N 0.07 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMX-01 17 66265384 66265384 C G SLC16A6 Missense_Mutation p.K475N 0.15 deleterious(0) possibly_damaging(0.632) TCGA-XF-AAMX-01 17 691331 691331 C A RNMTL1 Missense_Mutation p.S229Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMX-01 17 7094102 7094102 G T DLG4 Silent p.I743I 0.34 TCGA-XF-AAMX-01 17 7577556 7577556 C T TP53 Missense_Mutation p.C242Y 0.83 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 17 78226435 78226435 A T SLC26A11 Missense_Mutation p.R581W 0.08 deleterious(0.01) benign(0.325) TCGA-XF-AAMX-01 17 79073861 79073861 C G BAIAP2 Missense_Mutation p.S208C 0.54 tolerated(0.18) probably_damaging(0.955) TCGA-XF-AAMX-01 17 79792836 79792836 C T PPP1R27 5'UTR 0.14 TCGA-XF-AAMX-01 17 80847546 80847546 C T TBCD Silent p.A512A 0.12 TCGA-XF-AAMX-01 17 8273648 8273648 C T KRBA2 Missense_Mutation p.V95I 0.28 tolerated(0.32) benign(0.002) TCGA-XF-AAMX-01 18 5397164 5397164 C A EPB41L3 Missense_Mutation p.A912S 0.25 tolerated(0.37) benign(0.005) TCGA-XF-AAMX-01 18 72347066 72347066 A C ZNF407 Missense_Mutation p.K1364T 0.47 deleterious(0) possibly_damaging(0.783) TCGA-XF-AAMX-01 18 73139574 73139574 G A SMIM21 5'UTR 0.85 TCGA-XF-AAMX-01 19 10476224 10476224 C T TYK2 Nonsense_Mutation p.W327* 0.17 TCGA-XF-AAMX-01 19 11100050 11100056 GGCCGGG - SMARCA4 Frame_Shift_Del p.A393Ifs*16 1.00 TCGA-XF-AAMX-01 19 13184720 13184720 C G NFIX Missense_Mutation p.T233S 0.40 tolerated(0.14) benign(0.012) TCGA-XF-AAMX-01 19 19136197 19136197 A G SUGP2 Silent p.D320D 0.21 TCGA-XF-AAMX-01 19 19387801 19387801 G A SUGP1 Silent p.F622F 0.54 TCGA-XF-AAMX-01 19 20728550 20728550 G C ZNF737 Silent p.V153V 0.37 TCGA-XF-AAMX-01 19 20748555 20748555 G A ZNF737 5'Flank 0.56 TCGA-XF-AAMX-01 19 31770514 31770514 G T TSHZ3 Missense_Mutation p.S62Y 0.23 deleterious(0) possibly_damaging(0.77) TCGA-XF-AAMX-01 19 36106236 36106236 G C HAUS5 Missense_Mutation p.D145H 0.57 tolerated(0.06) benign(0.036) TCGA-XF-AAMX-01 19 41711905 41711905 C T CYP2S1 Missense_Mutation p.P403S 0.19 tolerated(0.27) probably_damaging(1) TCGA-XF-AAMX-01 19 42600336 42600336 G A POU2F2 Silent p.C187C 0.27 TCGA-XF-AAMX-01 19 45153126 45153126 G C PVR Missense_Mutation p.G158A 0.55 tolerated(0.73) possibly_damaging(0.504) TCGA-XF-AAMX-01 19 45381934 45381934 C A PVRL2 Intron 0.31 TCGA-XF-AAMX-01 19 46032601 46032601 C G OPA3 Missense_Mutation p.E86Q 0.60 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 19 49107093 49107093 G C FAM83E Missense_Mutation p.S278R 0.22 deleterious(0) probably_damaging(0.938) TCGA-XF-AAMX-01 19 49496313 49496313 C A GYS1 Missense_Mutation p.E19D 0.23 tolerated_low_confidence(0.3) benign(0.001) TCGA-XF-AAMX-01 19 50017194 50017194 G A FCGRT Silent p.G43G 0.19 TCGA-XF-AAMX-01 19 50964862 50964862 G T MYBPC2 Missense_Mutation p.G999C 0.24 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 19 52196139 52196139 G T SPACA6P-AS RNA 0.44 TCGA-XF-AAMX-01 19 52196143 52196143 G T SPACA6P-AS RNA 0.17 TCGA-XF-AAMX-01 19 54139998 54139998 C T DPRX Missense_Mutation p.P111L 0.66 tolerated(0.07) probably_damaging(0.953) TCGA-XF-AAMX-01 19 54313268 54313268 C G NLRP12 Missense_Mutation p.A549P 0.30 deleterious(0.01) possibly_damaging(0.604) TCGA-XF-AAMX-01 19 54755921 54755921 G T LILRB5 Missense_Mutation p.A542D 0.24 tolerated(0.27) benign(0.211) TCGA-XF-AAMX-01 19 54965839 54965839 A G LENG8 Silent p.Q219Q 0.30 TCGA-XF-AAMX-01 19 58099952 58099952 G A ZIK1 Missense_Mutation p.E40K 0.24 deleterious(0) benign(0.121) TCGA-XF-AAMX-01 19 8932723 8932723 G A ZNF558 Nonsense_Mutation p.Q26* 0.90 TCGA-XF-AAMX-01 19 9007506 9007506 G A MUC16 Silent p.S13154S 0.19 TCGA-XF-AAMX-01 19 9086905 9086905 C A MUC16 Missense_Mutation p.G1637V 0.23 unknown(0) TCGA-XF-AAMX-01 1 109807898 109807898 G T CELSR2 Missense_Mutation p.D1898Y 0.28 deleterious(0) probably_damaging(0.95) TCGA-XF-AAMX-01 1 111663143 111663143 A T DRAM2 Missense_Mutation p.L171H 0.39 deleterious(0.02) possibly_damaging(0.612) TCGA-XF-AAMX-01 1 116927435 116927435 C A ATP1A1 Missense_Mutation p.H52N 0.38 tolerated(0.3) benign(0.003) TCGA-XF-AAMX-01 1 119934748 119934748 G C HAO2 Missense_Mutation p.E263Q 0.49 deleterious(0) possibly_damaging(0.735) TCGA-XF-AAMX-01 1 120263919 120263919 A G PHGDH Missense_Mutation p.T89A 0.42 deleterious(0.04) benign(0.209) TCGA-XF-AAMX-01 1 12304312 12304312 G A VPS13D Missense_Mutation p.G62E 0.89 probably_damaging(0.998) TCGA-XF-AAMX-01 1 144879129 144879129 G C PDE4DIP Missense_Mutation p.L1441V 0.10 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMX-01 1 145563083 145563083 G A ANKRD35 Missense_Mutation p.R924Q 0.88 tolerated(0.58) benign(0.255) TCGA-XF-AAMX-01 1 150933493 150933493 G A SETDB1 Silent p.L985L 0.19 TCGA-XF-AAMX-01 1 150933602 150933602 G A SETDB1 Missense_Mutation p.E1022K 0.22 tolerated_low_confidence(0.1) probably_damaging(0.995) TCGA-XF-AAMX-01 1 156704188 156704188 C G RRNAD1 Missense_Mutation p.R342G 0.53 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 1 156902350 156902350 C G LRRC71 Intron 0.22 TCGA-XF-AAMX-01 1 160093053 160093053 C G ATP1A2 Missense_Mutation p.N76K 0.15 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 1 161010620 161010620 C A USF1 Missense_Mutation p.R201S 0.08 deleterious(0) probably_damaging(0.966) TCGA-XF-AAMX-01 1 161192829 161192829 G A APOA2 Missense_Mutation p.R22W 0.08 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMX-01 1 16270340 16270340 G A ZBTB17 Silent p.L474L 0.24 TCGA-XF-AAMX-01 1 182617314 182617314 A G RGS8 Silent p.H124H 0.23 TCGA-XF-AAMX-01 1 182787771 182787771 T G NPL Missense_Mutation p.C185G 0.24 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMX-01 1 204944532 204944532 C G NFASC Silent p.L564L 0.88 TCGA-XF-AAMX-01 1 21050658 21050658 G T SH2D5 Silent p.A239A 0.19 TCGA-XF-AAMX-01 1 22965542 22965542 G C C1QA Missense_Mutation p.G127A 0.30 tolerated(0.85) benign(0.001) TCGA-XF-AAMX-01 1 23111405 23111405 G C EPHB2 Missense_Mutation p.S216T 0.22 tolerated(0.23) benign(0.071) TCGA-XF-AAMX-01 1 23399811 23399811 G C KDM1A Missense_Mutation p.R550T 0.85 deleterious(0) probably_damaging(0.994) TCGA-XF-AAMX-01 1 243328859 243328859 T C CEP170 Silent p.R801R 0.26 TCGA-XF-AAMX-01 1 2436148 2436148 C A PLCH2 3'UTR 0.09 TCGA-XF-AAMX-01 1 24483749 24483749 G A IFNLR1 Silent p.S478S 0.20 TCGA-XF-AAMX-01 1 24483750 24483750 C T IFNLR1 Missense_Mutation p.S478N 0.19 deleterious(0.05) benign(0.317) TCGA-XF-AAMX-01 1 248112150 248112161 GGAATGCTCCAT - OR2L8 Missense_Mutation 0.34 TCGA-XF-AAMX-01 1 248202512 248202512 T A OR2L2 3'UTR 0.27 TCGA-XF-AAMX-01 1 28211907 28211907 G T THEMIS2 Missense_Mutation p.K607N 0.88 deleterious(0.03) possibly_damaging(0.572) TCGA-XF-AAMX-01 1 32381534 32381534 C G PTP4A2 Missense_Mutation p.D51H 0.37 deleterious(0) possibly_damaging(0.87) TCGA-XF-AAMX-01 1 36785787 36785787 C T SH3D21 Missense_Mutation p.S508L 0.96 tolerated(0.26) benign(0.006) TCGA-XF-AAMX-01 1 38463021 38463023 AGG TT FHL3 3'UTR 0.25 TCGA-XF-AAMX-01 1 42875784 42875784 T C RIMKLA Missense_Mutation p.V204A 0.39 deleterious(0.04) benign(0.393) TCGA-XF-AAMX-01 1 43886490 43886490 G T SZT2 Missense_Mutation p.M444I 0.36 tolerated(0.32) benign(0) TCGA-XF-AAMX-01 1 55074960 55074960 G A FAM151A Missense_Mutation p.A580V 0.68 deleterious_low_confidence(0.05) benign(0.063) TCGA-XF-AAMX-01 1 6511676 6511676 C T ESPN Silent p.F643F 0.92 TCGA-XF-AAMX-01 1 7811424 7811424 A T CAMTA1 Missense_Mutation p.T1619S 0.21 tolerated(0.39) benign(0.118) TCGA-XF-AAMX-01 1 79128500 79128500 G A IFI44 Missense_Mutation p.A409T 0.51 tolerated(0.06) probably_damaging(0.957) TCGA-XF-AAMX-01 1 94655486 94655486 C G ARHGAP29 Missense_Mutation p.D479H 0.26 tolerated(0.24) probably_damaging(0.999) TCGA-XF-AAMX-01 1 99772354 99772354 G A LPPR4 Missense_Mutation p.E694K 0.31 deleterious(0.04) benign(0.055) TCGA-XF-AAMX-01 20 23476465 23476465 C T CST8 Intron 0.19 TCGA-XF-AAMX-01 20 2818910 2818910 C T PCED1A Missense_Mutation p.G270D 0.44 deleterious(0) probably_damaging(0.993) TCGA-XF-AAMX-01 20 30486305 30486305 C G TTLL9 Missense_Mutation p.T48S 0.19 tolerated(0.37) benign(0.027) TCGA-XF-AAMX-01 20 31379486 31379486 A T DNMT3B Missense_Mutation p.Y298F 0.10 deleterious(0) probably_damaging(0.991) TCGA-XF-AAMX-01 20 33523396 33523396 G A GSS Missense_Mutation p.R273C 0.41 tolerated(0.05) benign(0.369) TCGA-XF-AAMX-01 20 36793676 36793676 G A TGM2 5'UTR 0.43 TCGA-XF-AAMX-01 20 37634915 37634915 G A DHX35 Missense_Mutation p.V380M 0.29 deleterious(0.03) possibly_damaging(0.828) TCGA-XF-AAMX-01 20 39990249 39990249 G A EMILIN3 Silent p.L654L 0.28 TCGA-XF-AAMX-01 20 39991632 39991632 G A EMILIN3 Silent p.L193L 0.31 TCGA-XF-AAMX-01 20 42168834 42168834 C G L3MBTL1 Silent p.A717A 0.36 TCGA-XF-AAMX-01 20 44506687 44506687 C G ZSWIM3 Missense_Mutation p.T497S 0.19 tolerated(0.27) benign(0.003) TCGA-XF-AAMX-01 20 4839995 4839995 G C SLC23A2 Missense_Mutation p.L554V 0.36 deleterious(0.02) benign(0.007) TCGA-XF-AAMX-01 20 56918777 56918777 A T RAB22A Silent p.A40A 0.56 TCGA-XF-AAMX-01 20 60697761 60697761 G C LSM14B Missense_Mutation p.K13N 0.40 deleterious(0.01) possibly_damaging(0.697) TCGA-XF-AAMX-01 20 61867569 61867569 G A BIRC7 Missense_Mutation p.G41S 0.42 tolerated(0.28) benign(0.054) TCGA-XF-AAMX-01 21 10863033 10863033 C T IGHV1OR21-1 Missense_Mutation p.T110M 0.08 tolerated(0.1) possibly_damaging(0.596) TCGA-XF-AAMX-01 21 30338207 30338207 G A LTN1 Missense_Mutation p.L761F 0.29 tolerated(0.33) benign(0.005) TCGA-XF-AAMX-01 21 38877827 38877827 C G DYRK1A Missense_Mutation p.S494C 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-XF-AAMX-01 21 39947622 39947622 C T ERG Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0.03) benign(0.001) TCGA-XF-AAMX-01 21 43242385 43242385 C A PRDM15 Silent p.A956A 0.22 TCGA-XF-AAMX-01 22 17071916 17071916 C T CCT8L2 Missense_Mutation p.E509K 0.43 deleterious(0.04) benign(0.416) TCGA-XF-AAMX-01 22 18364028 18364028 C T MICAL3 Intron 0.44 TCGA-XF-AAMX-01 22 19838803 19838803 C T C22orf29 Missense_Mutation p.E328K 0.61 tolerated_low_confidence(0.26) benign(0.001) TCGA-XF-AAMX-01 22 19929327 19929327 C T COMT 5'UTR 0.67 TCGA-XF-AAMX-01 22 22730729 22730729 C A IGLV5-45 Nonsense_Mutation p.S75* 0.13 TCGA-XF-AAMX-01 22 23915403 23915403 C T IGLL1 3'UTR 0.58 TCGA-XF-AAMX-01 22 31846311 31846311 C G EIF4ENIF1 Missense_Mutation p.E516D 0.41 tolerated(0.2) probably_damaging(0.989) TCGA-XF-AAMX-01 22 38016817 38016817 C T GGA1 Intron 0.18 TCGA-XF-AAMX-01 22 40807500 40807500 C T MKL1 Missense_Mutation p.G897D 0.43 tolerated(0.08) probably_damaging(0.996) TCGA-XF-AAMX-01 22 41922210 41922210 C T POLR3H 3'UTR 0.22 TCGA-XF-AAMX-01 22 43735236 43735236 C A SCUBE1 Missense_Mutation p.V32F 0.45 tolerated(0.2) benign(0.09) TCGA-XF-AAMX-01 22 45601141 45601141 A T KIAA0930 Missense_Mutation p.I163N 0.55 deleterious(0) possibly_damaging(0.632) TCGA-XF-AAMX-01 22 45923847 45923847 C G FBLN1 Missense_Mutation p.Q148E 0.58 tolerated(0.21) benign(0.006) TCGA-XF-AAMX-01 22 50659642 50659642 C T TUBGCP6 Missense_Mutation p.R1049Q 0.81 tolerated(0.26) benign(0.019) TCGA-XF-AAMX-01 2 11332607 11332607 T C ROCK2 Missense_Mutation p.K1307E 0.22 deleterious(0.04) benign(0.419) TCGA-XF-AAMX-01 2 118865859 118865859 C G INSIG2 Nonsense_Mutation p.Y213* 0.23 TCGA-XF-AAMX-01 2 170360911 170361000 GTGAAACCTATTTTTTTGTTTTTTTCCTCTTCCTTGCCCACCTTCTCTATTCCCATCTTATCCTCCTGTCTCCCAAAAAGCAACAAGATC - BBS5 Splice_Site p.X309_splice 0.39 TCGA-XF-AAMX-01 2 179437888 179437888 G T TTN Missense_Mutation p.P24324H 0.30 TCGA-XF-AAMX-01 2 179505354 179505354 G A TTN Missense_Mutation p.P13546L 0.27 TCGA-XF-AAMX-01 2 179545002 179545002 C G TTN Missense_Mutation p.E11133Q 0.53 TCGA-XF-AAMX-01 2 179612805 179612805 C T TTN Intron 0.22 TCGA-XF-AAMX-01 2 182542570 182542570 A - NEUROD1 Frame_Shift_Del p.S340Hfs*7 0.39 TCGA-XF-AAMX-01 2 185802159 185802159 C T ZNF804A Missense_Mutation p.T679I 0.24 tolerated(0.1) probably_damaging(0.981) TCGA-XF-AAMX-01 2 185802307 185802307 A G ZNF804A Silent p.K728K 0.27 TCGA-XF-AAMX-01 2 202342854 202342854 G T STRADB Silent p.G255G 0.35 TCGA-XF-AAMX-01 2 208489111 208489111 C A METTL21A 5'UTR 0.37 TCGA-XF-AAMX-01 2 21229014 21229014 G T APOB Missense_Mutation p.L3576I 0.85 benign(0.017) TCGA-XF-AAMX-01 2 220503588 220503588 C G SLC4A3 Missense_Mutation p.T1034R 0.33 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 2 238280765 238280765 C G COL6A3 Missense_Mutation p.V1299L 0.26 benign(0.439) TCGA-XF-AAMX-01 2 25966085 25966085 C A ASXL2 Missense_Mutation p.A1041S 0.64 tolerated(0.09) benign(0.009) TCGA-XF-AAMX-01 2 48035567 48035567 C G FBXO11 Splice_Site p.X852_splice 0.13 TCGA-XF-AAMX-01 2 55571514 55571514 T A CCDC88A Missense_Mutation p.D393V 0.25 deleterious(0) probably_damaging(0.915) TCGA-XF-AAMX-01 2 61145592 61145628 ATGTACACCGTCAAGTAGCCATTGTTTTCAAAACTCC - REL Frame_Shift_Del p.V236Hfs*10 0.35 TCGA-XF-AAMX-01 2 61622079 61622079 C A USP34 Missense_Mutation p.G221V 0.30 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMX-01 2 64174580 64174580 C T VPS54 Silent p.K394K 0.24 TCGA-XF-AAMX-01 2 68520894 68520894 G A CNRIP1 3'UTR 0.45 TCGA-XF-AAMX-01 2 73518705 73518705 G T EGR4 Missense_Mutation p.F550L 0.62 deleterious(0.02) benign(0.027) TCGA-XF-AAMX-01 2 73519828 73519828 G A EGR4 Missense_Mutation p.A176V 0.75 deleterious(0) benign(0.234) TCGA-XF-AAMX-01 2 73680753 73680753 G C ALMS1 Missense_Mutation p.E2366Q 0.37 probably_damaging(0.988) TCGA-XF-AAMX-01 2 73680906 73680906 G A ALMS1 Missense_Mutation p.D2417N 0.30 probably_damaging(0.993) TCGA-XF-AAMX-01 2 73717033 73717067 AAGTCATTCCCCATTTCAGAACTTTATACCTGATG - ALMS1 Frame_Shift_Del p.S2649Ifs*13 0.27 TCGA-XF-AAMX-01 2 74043982 74043982 G A C2orf78 Missense_Mutation p.E878K 0.49 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMX-01 2 88082674 88082674 G A RGPD2 Missense_Mutation p.S1290F 0.41 deleterious(0.01) possibly_damaging(0.683) TCGA-XF-AAMX-01 2 9574077 9574094 TATTCTTATCATTGTAAG - CPSF3 Splice_Site p.X201_splice 0.29 TCGA-XF-AAMX-01 2 99224806 99224806 C T COA5 Silent p.L21L 0.54 TCGA-XF-AAMX-01 2 99787986 99787986 C G MITD1 Missense_Mutation p.R126T 0.26 deleterious(0) probably_damaging(0.98) TCGA-XF-AAMX-01 3 101283784 101283784 G C TRMT10C Missense_Mutation p.E53D 0.27 tolerated(0.36) benign(0.001) TCGA-XF-AAMX-01 3 121724095 121724095 C G ILDR1 Missense_Mutation p.Q125H 0.60 deleterious(0) probably_damaging(0.986) TCGA-XF-AAMX-01 3 122269628 122269628 C A PARP9 Nonsense_Mutation p.E412* 0.21 TCGA-XF-AAMX-01 3 127775579 127775580 - TA SEC61A1 Frame_Shift_Ins p.V85Lfs*7 0.20 TCGA-XF-AAMX-01 3 140285017 140285017 G A CLSTN2 Silent p.G930G 0.18 TCGA-XF-AAMX-01 3 142177933 142177933 T G ATR Missense_Mutation p.Y2457S 0.30 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 3 142525039 142525039 C T TRPC1 Missense_Mutation p.R782W 0.20 deleterious(0) probably_damaging(0.992) TCGA-XF-AAMX-01 3 148777540 148777540 G A HLTF Missense_Mutation p.S447F 0.22 tolerated(0.16) benign(0.018) TCGA-XF-AAMX-01 3 149290682 149290682 C G WWTR1 Missense_Mutation p.Q179H 0.67 deleterious(0.02) possibly_damaging(0.594) TCGA-XF-AAMX-01 3 15512083 15512083 T A COLQ Missense_Mutation p.H226L 0.18 tolerated(0.11) unknown(0) TCGA-XF-AAMX-01 3 156396354 156396354 G A TIPARP Missense_Mutation p.E290K 0.64 deleterious(0.02) benign(0.382) TCGA-XF-AAMX-01 3 172224383 172224383 C T TNFSF10 Missense_Mutation p.E249K 0.21 tolerated(0.17) possibly_damaging(0.578) TCGA-XF-AAMX-01 3 184428541 184428541 G C MAGEF1 3'UTR 0.27 TCGA-XF-AAMX-01 3 185369897 185369897 C T IGF2BP2 Silent p.P482P 0.19 TCGA-XF-AAMX-01 3 186760729 186760729 A G ST6GAL1 Missense_Mutation p.S80G 0.22 benign(0) TCGA-XF-AAMX-01 3 195516194 195516194 C T MUC4 Missense_Mutation p.G753R 0.21 unknown(0) TCGA-XF-AAMX-01 3 33194469 33194469 C A SUSD5 Missense_Mutation p.S552I 0.24 tolerated(0.08) benign(0.11) TCGA-XF-AAMX-01 3 37368843 37368843 A C GOLGA4 Missense_Mutation p.K1844N 0.34 benign(0.021) TCGA-XF-AAMX-01 3 37826491 37826491 C A ITGA9 Missense_Mutation p.F937L 0.47 tolerated(0.13) benign(0.033) TCGA-XF-AAMX-01 3 39185627 39185627 C A CSRNP1 Splice_Site p.X260_splice 0.91 TCGA-XF-AAMX-01 3 42740330 42740330 T A HHATL Missense_Mutation p.Y118F 0.16 tolerated(0.39) benign(0.165) TCGA-XF-AAMX-01 3 47286372 47286372 C T KIF9 Missense_Mutation p.E475K 0.90 tolerated(0.06) benign(0.06) TCGA-XF-AAMX-01 3 69998243 69998243 A T MITF Missense_Mutation p.Q268H 0.51 tolerated(0.09) benign(0.022) TCGA-XF-AAMX-01 3 70014299 70014299 G A MITF Missense_Mutation p.G488D 0.56 deleterious(0.02) possibly_damaging(0.848) TCGA-XF-AAMX-01 3 9517533 9517533 C G SETD5 Missense_Mutation p.Q1363E 0.94 tolerated(0.1) probably_damaging(0.968) TCGA-XF-AAMX-01 4 115791981 115791981 C T NDST4 Silent p.V554V 0.65 TCGA-XF-AAMX-01 4 126239153 126239153 C T FAT4 Silent p.S529S 0.36 TCGA-XF-AAMX-01 4 159642551 159642551 C G PPID Missense_Mutation p.G57A 0.47 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 4 175899129 175899129 C T ADAM29 Missense_Mutation p.T818M 0.66 deleterious_low_confidence(0.02) unknown(0) TCGA-XF-AAMX-01 4 183673081 183673081 A T TENM3 Missense_Mutation p.N1253I 0.56 deleterious(0) possibly_damaging(0.902) TCGA-XF-AAMX-01 4 22389495 22389495 T A GPR125 Missense_Mutation p.R1267W 0.56 deleterious(0) possibly_damaging(0.619) TCGA-XF-AAMX-01 4 25415982 25415982 A G ANAPC4 Missense_Mutation p.I554V 0.87 tolerated(0.5) benign(0.001) TCGA-XF-AAMX-01 4 25819815 25819815 C A SEL1L3 Silent p.L503L 0.86 TCGA-XF-AAMX-01 4 3174751 3174751 C A HTT Silent p.G1353G 0.47 TCGA-XF-AAMX-01 4 52883387 52883387 A G LRRC66 Silent p.P131P 0.30 TCGA-XF-AAMX-01 4 56885575 56885575 T A CEP135 Silent p.L1023L 0.20 TCGA-XF-AAMX-01 4 57876570 57876570 G A POLR2B Missense_Mutation p.R483H 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAMX-01 4 77817777 77817777 C G SOWAHB Missense_Mutation p.S409T 0.39 tolerated(0.07) benign(0.153) TCGA-XF-AAMX-01 4 83839948 83839948 G A THAP9 Silent p.E861E 0.29 TCGA-XF-AAMX-01 5 112889544 112889544 G A YTHDC2 Missense_Mutation p.R682Q 0.63 deleterious(0) probably_damaging(0.955) TCGA-XF-AAMX-01 5 122163324 122163324 G A SNX2 Missense_Mutation p.V498I 0.27 tolerated(0.08) benign(0.224) TCGA-XF-AAMX-01 5 133295470 133295470 C T C5orf15 Silent p.E127E 0.30 TCGA-XF-AAMX-01 5 137342773 137342773 C T FAM13B Missense_Mutation p.E252K 0.22 tolerated(0.21) probably_damaging(0.993) TCGA-XF-AAMX-01 5 140187477 140187477 C A PCDHA4 Silent p.A235A 0.42 TCGA-XF-AAMX-01 5 140187497 140187497 T G PCDHA4 Missense_Mutation p.F242C 0.44 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-XF-AAMX-01 5 140603733 140603733 C A PCDHB14 Missense_Mutation p.S219Y 0.56 deleterious_low_confidence(0) benign(0.236) TCGA-XF-AAMX-01 5 14471541 14471541 G C TRIO Missense_Mutation p.E1960Q 0.62 benign(0.013) TCGA-XF-AAMX-01 5 150444592 150444592 G A TNIP1 Missense_Mutation p.S22F 0.21 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMX-01 5 54624598 54624598 A G SKIV2L2 Silent p.L158L 0.28 TCGA-XF-AAMX-01 5 90052388 90052388 G C GPR98 Missense_Mutation p.E3900Q 0.50 probably_damaging(0.932) TCGA-XF-AAMX-01 6 131277440 131277440 C T EPB41L2 Silent p.Q62Q 0.43 TCGA-XF-AAMX-01 6 157470083 157470083 C T ARID1B Silent p.S959S 0.44 TCGA-XF-AAMX-01 6 20126786 20126786 G A MBOAT1 Nonsense_Mutation p.R226* 0.79 TCGA-XF-AAMX-01 6 26017301 26017301 T A HIST1H1A 3'UTR 0.34 TCGA-XF-AAMX-01 6 32974534 32974534 G C HLA-DOA 3'UTR 0.50 TCGA-XF-AAMX-01 6 33171324 33171324 C T SLC39A7 Missense_Mutation p.R382C 0.09 tolerated(0.27) benign(0.066) TCGA-XF-AAMX-01 6 43270081 43270081 G A SLC22A7 Missense_Mutation p.R402H 0.81 tolerated(0.05) possibly_damaging(0.458) TCGA-XF-AAMX-01 6 53139904 53139904 C A ELOVL5 Missense_Mutation p.W187C 0.12 deleterious(0) probably_damaging(0.994) TCGA-XF-AAMX-01 6 56484601 56484601 C G DST Intron 0.22 TCGA-XF-AAMX-01 6 64394374 64394374 C A PHF3 Missense_Mutation p.H251N 0.39 tolerated_low_confidence(0.06) benign(0.003) TCGA-XF-AAMX-01 6 69653875 69653875 C T BAI3 Missense_Mutation p.A395V 0.46 deleterious(0.01) probably_damaging(0.984) TCGA-XF-AAMX-01 6 90422415 90422415 C G MDN1 Missense_Mutation p.D2437H 0.74 probably_damaging(0.984) TCGA-XF-AAMX-01 7 100151733 100151733 C T AGFG2 Silent p.H201H 0.24 TCGA-XF-AAMX-01 7 100276080 100276080 C T GNB2 Silent p.F253F 0.39 TCGA-XF-AAMX-01 7 107215699 107215699 G A DUS4L Silent p.V141V 0.52 TCGA-XF-AAMX-01 7 108112949 108112949 C T PNPLA8 Missense_Mutation p.A749T 0.17 deleterious(0.05) benign(0.034) TCGA-XF-AAMX-01 7 128388726 128388726 A C CALU Missense_Mutation p.H38P 0.27 tolerated(0.26) benign(0.008) TCGA-XF-AAMX-01 7 128489247 128489247 G T FLNC Missense_Mutation p.G1647V 0.31 deleterious(0.01) probably_damaging(1) TCGA-XF-AAMX-01 7 128846180 128846180 C T SMO Silent p.V370V 0.57 TCGA-XF-AAMX-01 7 137590460 137590460 C G CREB3L2 Missense_Mutation p.K301N 0.22 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMX-01 7 141799460 141799460 T C MGAM Silent p.P1703P 0.38 TCGA-XF-AAMX-01 7 142032448 142032448 G A TRBV7-1 Missense_Mutation p.E90K 0.39 tolerated(0.71) benign(0.013) TCGA-XF-AAMX-01 7 142570192 142570192 G A TRPV6 Missense_Mutation p.R610C 0.33 tolerated(0.06) benign(0.117) TCGA-XF-AAMX-01 7 143792887 143792887 T C OR2A12 Silent p.S229S 0.23 TCGA-XF-AAMX-01 7 150934492 150934492 C T CHPF2 Silent p.P348P 0.25 TCGA-XF-AAMX-01 7 33054323 33054323 C G NT5C3A 3'UTR 0.20 TCGA-XF-AAMX-01 7 38393325 38393325 G T TRGV4 Silent p.T115T 0.08 TCGA-XF-AAMX-01 7 5105238 5105238 G C RBAK 3'UTR 0.55 TCGA-XF-AAMX-01 7 64639796 64639796 C T INTS4L1 RNA 0.10 TCGA-XF-AAMX-01 7 65552352 65552352 G C ASL Missense_Mutation p.D212H 0.35 deleterious(0) probably_damaging(0.951) TCGA-XF-AAMX-01 7 73929847 73929847 C T GTF2IRD1 Silent p.L146L 0.95 TCGA-XF-AAMX-01 7 73929920 73929920 C G GTF2IRD1 Missense_Mutation p.L171V 0.94 deleterious(0.01) probably_damaging(0.947) TCGA-XF-AAMX-01 7 73933956 73933956 C G GTF2IRD1 Missense_Mutation p.P307A 0.84 tolerated(0.1) benign(0.022) TCGA-XF-AAMX-01 7 81714151 81714151 C T CACNA2D1 Missense_Mutation p.E198K 0.74 tolerated(0.27) benign(0.063) TCGA-XF-AAMX-01 7 94881113 94881113 G C PPP1R9A Missense_Mutation p.K812N 0.24 deleterious(0) probably_damaging(0.976) TCGA-XF-AAMX-01 7 97822808 97822808 G C LMTK2 Missense_Mutation p.D1011H 0.19 deleterious(0.04) possibly_damaging(0.77) TCGA-XF-AAMX-01 7 99097460 99097460 C T ZNF394 Missense_Mutation p.R86Q 0.17 deleterious(0.02) possibly_damaging(0.633) TCGA-XF-AAMX-01 8 103324468 103324468 G C UBR5 Silent p.V719V 0.45 TCGA-XF-AAMX-01 8 103846431 103846431 A T AZIN1 Missense_Mutation p.F243I 0.28 tolerated(0.25) benign(0.002) TCGA-XF-AAMX-01 8 10584169 10584169 C T SOX7 Silent p.S134S 0.80 TCGA-XF-AAMX-01 8 120650703 120650703 A T ENPP2 Missense_Mutation p.I33N 0.20 tolerated(0.33) benign(0.038) TCGA-XF-AAMX-01 8 125107171 125107171 C T FER1L6 Silent p.L1529L 0.33 TCGA-XF-AAMX-01 8 131130913 131130913 C T ASAP1 Missense_Mutation p.R539Q 0.56 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMX-01 8 133192547 133192547 C T KCNQ3 Missense_Mutation p.V212M 0.25 deleterious(0) probably_damaging(0.985) TCGA-XF-AAMX-01 8 134125752 134125752 T A TG Missense_Mutation p.D2553E 0.30 deleterious(0.01) possibly_damaging(0.707) TCGA-XF-AAMX-01 8 144406279 144406279 G A TOP1MT Nonsense_Mutation p.R284* 0.20 TCGA-XF-AAMX-01 8 22011489 22011489 C G LGI3 Silent p.L162L 0.20 TCGA-XF-AAMX-01 8 26237967 26237967 A G BNIP3L 5'Flank 0.17 TCGA-XF-AAMX-01 8 48883197 48883197 C G MCM4 Missense_Mutation p.Q521E 0.28 deleterious(0.02) possibly_damaging(0.85) TCGA-XF-AAMX-01 8 49643941 49643941 T C EFCAB1 Silent p.T60T 0.33 TCGA-XF-AAMX-01 8 56698280 56698280 G A TGS1 Missense_Mutation p.D57N 0.32 deleterious(0.01) possibly_damaging(0.735) TCGA-XF-AAMX-01 8 67976690 67976690 A G CSPP1 Silent p.L19L 0.39 TCGA-XF-AAMX-01 8 71570032 71570032 C G LACTB2 Silent p.L124L 0.38 TCGA-XF-AAMX-01 8 92346658 92346658 C - SLC26A7 Frame_Shift_Del p.P260Lfs*2 0.29 TCGA-XF-AAMX-01 8 95523458 95523458 G C KIAA1429 Silent p.L1115L 0.51 TCGA-XF-AAMX-01 8 97256296 97256296 C A MTERFD1 Nonsense_Mutation p.E304* 0.23 TCGA-XF-AAMX-01 9 107646764 107646764 G A ABCA1 Silent p.F82F 0.89 TCGA-XF-AAMX-01 9 115805027 115805027 G C ZFP37 Nonsense_Mutation p.S624* 0.77 TCGA-XF-AAMX-01 9 127715130 127715130 C T SCAI Missense_Mutation p.D616N 0.94 tolerated(0.18) possibly_damaging(0.82) TCGA-XF-AAMX-01 9 128003526 128003526 G A HSPA5 5'UTR 1.00 TCGA-XF-AAMX-01 9 130982561 130982561 T C DNM1 Missense_Mutation p.S264P 0.86 deleterious(0) possibly_damaging(0.721) TCGA-XF-AAMX-01 9 138516444 138516444 G C GLT6D1 Missense_Mutation p.I110M 0.87 deleterious(0) probably_damaging(0.927) TCGA-XF-AAMX-01 9 140076208 140076208 C G ANAPC2 Missense_Mutation p.E465Q 0.56 deleterious(0.01) possibly_damaging(0.88) TCGA-XF-AAMX-01 9 140080789 140080789 C T ANAPC2 Missense_Mutation p.E254K 0.64 deleterious(0) probably_damaging(0.971) TCGA-XF-AAMX-01 9 140081930 140081930 C T ANAPC2 Intron 0.51 TCGA-XF-AAMX-01 9 140082285 140082285 C T ANAPC2 Missense_Mutation p.E130K 0.65 tolerated(0.25) benign(0.005) TCGA-XF-AAMX-01 9 140086970 140086970 G A TPRN Silent p.F633F 0.73 TCGA-XF-AAMX-01 9 140093911 140093911 G A TPRN Missense_Mutation p.S418L 0.91 tolerated(0.1) benign(0.032) TCGA-XF-AAMX-01 9 140099448 140099448 C A TMEM203 3'UTR 0.73 TCGA-XF-AAMX-01 9 140099690 140099690 G A TMEM203 Silent p.L59L 0.71 TCGA-XF-AAMX-01 9 140099778 140099778 G A TMEM203 Missense_Mutation p.S30F 0.62 deleterious(0) probably_damaging(0.968) TCGA-XF-AAMX-01 9 140108690 140108690 G C NDOR1 Missense_Mutation p.E183Q 0.58 tolerated(0.11) benign(0.06) TCGA-XF-AAMX-01 9 140110578 140110578 G A NDOR1 Silent p.R538R 0.66 TCGA-XF-AAMX-01 9 17394609 17394609 G A CNTLN Missense_Mutation p.M719I 0.92 tolerated(0.57) benign(0.001) TCGA-XF-AAMX-01 9 18474180 18474180 C A ADAMTSL1 5'UTR 0.36 TCGA-XF-AAMX-01 9 21166381 21166381 G C IFNA21 Missense_Mutation p.I77M 0.83 tolerated(0.07) possibly_damaging(0.569) TCGA-XF-AAMX-01 9 3224921 3224921 A G RFX3 3'UTR 0.82 TCGA-XF-AAMX-01 9 35042939 35042939 G C C9orf131 Missense_Mutation p.E105Q 0.56 tolerated(0.07) benign(0.322) TCGA-XF-AAMX-01 9 35043079 35043079 G T C9orf131 Silent p.G151G 0.53 TCGA-XF-AAMX-01 9 35800054 35800054 C G NPR2 Missense_Mutation p.I341M 0.38 deleterious(0.03) benign(0.012) TCGA-XF-AAMX-01 9 36170285 36170285 G A CCIN Silent p.Q262Q 0.35 TCGA-XF-AAMX-01 9 37740460 37740460 G A FRMPD1 Silent p.E645E 0.13 TCGA-XF-AAMX-01 9 6605263 6605263 G A GLDC Silent p.L243L 0.73 TCGA-XF-AAMX-01 9 90501816 90501816 C G SPATA31E1 Missense_Mutation p.P805R 0.72 tolerated(0.08) benign(0.187) TCGA-XF-AAMX-01 9 91963078 91963078 G C SECISBP2 Missense_Mutation p.D563H 0.14 deleterious(0.04) benign(0.043) TCGA-XF-AAMX-01 9 94794674 94794674 C A SPTLC1 3'UTR 0.18 TCGA-XF-AAMX-01 X 102529513 102529513 C T TCEAL5 5'UTR 0.62 TCGA-XF-AAMX-01 X 107403776 107403776 C T COL4A6 Missense_Mutation p.C1482Y 0.59 benign(0.026) TCGA-XF-AAMX-01 X 114856614 114856614 G C PLS3 Missense_Mutation p.A44P 0.58 tolerated(0.06) possibly_damaging(0.882) TCGA-XF-AAMX-01 X 123780576 123780576 C T TENM1 Missense_Mutation p.G555E 0.31 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMX-01 X 137717690 137717692 CTT - FGF13 In_Frame_Del p.E186del 0.25 TCGA-XF-AAMX-01 X 138823238 138823238 G A ATP11C Nonsense_Mutation p.R1019* 0.38 TCGA-XF-AAMX-01 X 153285224 153285224 C A IRAK1 Missense_Mutation p.G14C 0.31 deleterious_low_confidence(0) unknown(0) TCGA-XF-AAMX-01 X 41201840 41201840 G C DDX3X Missense_Mutation p.R126P 0.17 deleterious(0.01) possibly_damaging(0.869) TCGA-XF-AAMX-01 X 43552667 43552667 T A MAOA Missense_Mutation p.Y100N 0.37 deleterious(0.01) possibly_damaging(0.777) TCGA-XF-AAMX-01 X 44922688 44922688 C T KDM6A Nonsense_Mutation p.Q517* 0.43 TCGA-XF-AAMX-01 X 49768196 49768196 C T CLCN5 Intron 0.27 TCGA-XF-AAMX-01 X 55033379 55033379 G A APEX2 Silent p.T356T 0.41 TCGA-XF-AAMX-01 X 73065414 73065414 C T XIST RNA 0.91 TCGA-XF-AAMX-01 X 9656165 9656165 C G TBL1X Missense_Mutation p.Q156E 0.89 tolerated(0.57) benign(0.01) TCGA-XF-AAMY-01 10 17113580 17113580 C A CUBN Nonsense_Mutation p.E824* 0.21 TCGA-XF-AAMY-01 10 23481580 23481580 G C PTF1A Missense_Mutation p.E41Q 0.08 deleterious_low_confidence(0.04) probably_damaging(0.932) TCGA-XF-AAMY-01 10 38121296 38121296 C T ZNF248 Silent p.V329V 0.18 TCGA-XF-AAMY-01 10 43287216 43287216 A C BMS1 Silent p.R260R 0.20 TCGA-XF-AAMY-01 10 62631383 62631383 G A RHOBTB1 Missense_Mutation p.R650C 0.28 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMY-01 10 63852830 63852830 G A ARID5B 3'UTR 0.42 TCGA-XF-AAMY-01 11 102661152 102661152 C T MMP1 Silent p.R467R 0.11 TCGA-XF-AAMY-01 11 103043931 103043931 C G DYNC2H1 Missense_Mutation p.H1819D 0.39 benign(0.028) TCGA-XF-AAMY-01 11 108594046 108594047 - CTAA DDX10 Frame_Shift_Ins p.T610* 0.22 TCGA-XF-AAMY-01 11 14632602 14632602 C G PSMA1 5'UTR 0.18 TCGA-XF-AAMY-01 11 45926753 45926753 C T MAPK8IP1 Silent p.H672H 0.23 TCGA-XF-AAMY-01 11 47431835 47431835 C T SLC39A13 Missense_Mutation p.R64W 0.37 deleterious(0.02) possibly_damaging(0.776) TCGA-XF-AAMY-01 11 5841664 5841664 C G OR52N2 Missense_Mutation p.F33L 0.59 tolerated(0.14) benign(0.014) TCGA-XF-AAMY-01 11 77936237 77936237 C G GAB2 Missense_Mutation p.E407Q 0.33 tolerated(0.11) probably_damaging(0.937) TCGA-XF-AAMY-01 12 132625524 132625524 G A DDX51 Missense_Mutation p.S431L 0.25 deleterious(0) probably_damaging(1) TCGA-XF-AAMY-01 12 44124153 44124153 A G PUS7L 3'UTR 0.17 TCGA-XF-AAMY-01 12 48578220 48578220 C G C12orf68 Silent p.V105V 0.33 TCGA-XF-AAMY-01 12 51207834 51207834 G A ATF1 Missense_Mutation p.G124S 0.33 tolerated(0.18) benign(0.006) TCGA-XF-AAMY-01 12 58002908 58002908 G C DTX3 Silent p.L339L 0.13 TCGA-XF-AAMY-01 12 94641867 94641867 G A PLXNC1 Silent p.L859L 0.21 TCGA-XF-AAMY-01 13 25265358 25265358 T A ATP12A Missense_Mutation p.N352K 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-XF-AAMY-01 13 28841303 28841303 G A PAN3 Missense_Mutation p.V549I 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-XF-AAMY-01 13 79175902 79175902 G A POU4F1 Missense_Mutation p.S303L 0.38 deleterious(0.01) unknown(0) TCGA-XF-AAMY-01 14 21991815 21991815 C T SALL2 Missense_Mutation p.A683T 0.31 tolerated(0.17) benign(0.006) TCGA-XF-AAMY-01 14 31582555 31582555 C G HECTD1 Missense_Mutation p.E1998Q 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-XF-AAMY-01 14 39555049 39555049 G A SEC23A Nonsense_Mutation p.R249* 0.26 TCGA-XF-AAMY-01 14 58874151 58874151 G A TOMM20L Missense_Mutation p.E124K 0.31 deleterious(0.02) possibly_damaging(0.554) TCGA-XF-AAMY-01 15 25455076 25455076 G A SNORD115-22 RNA 0.15 TCGA-XF-AAMY-01 15 41366661 41366661 C - INO80 Frame_Shift_Del p.E412Kfs*4 0.23 TCGA-XF-AAMY-01 15 42736437 42736437 C T ZNF106 Silent p.L1105L 0.12 TCGA-XF-AAMY-01 15 43893596 43893596 G C STRC Missense_Mutation p.Q1567E 0.22 deleterious(0.01) possibly_damaging(0.897) TCGA-XF-AAMY-01 15 43893683 43893683 G C STRC Missense_Mutation p.L1538V 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-XF-AAMY-01 15 43896317 43896317 G C STRC Missense_Mutation p.L1418V 0.41 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMY-01 15 50773861 50773861 G A USP8 Missense_Mutation p.E468K 0.31 deleterious(0.02) probably_damaging(0.952) TCGA-XF-AAMY-01 15 68620595 68620595 C T ITGA11 Missense_Mutation p.R636H 0.54 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMY-01 15 75982694 75982694 G A CSPG4 Missense_Mutation p.P238S 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-XF-AAMY-01 15 90349663 90349663 G A ANPEP Missense_Mutation p.P51L 0.30 deleterious(0.03) benign(0.002) TCGA-XF-AAMY-01 16 56995987 56995987 C A CETP Silent p.I32I 0.63 TCGA-XF-AAMY-01 16 67166812 67166812 G T C16orf70 Nonsense_Mutation p.E150* 0.12 TCGA-XF-AAMY-01 16 68021535 68021535 G A DPEP2 Silent p.L445L 0.08 TCGA-XF-AAMY-01 16 70432372 70432372 G A ST3GAL2 Missense_Mutation p.S21F 0.68 probably_damaging(0.998) TCGA-XF-AAMY-01 16 72992974 72992974 G A ZFHX3 Silent p.L357L 0.13 TCGA-XF-AAMY-01 17 10243673 10243673 G C MYH13 Missense_Mutation p.S647C 0.20 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMY-01 17 10357039 10357039 G A MYH4 Missense_Mutation p.S952L 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-XF-AAMY-01 17 10357086 10357086 G T MYH4 Silent p.I936I 0.20 TCGA-XF-AAMY-01 17 2218989 2218989 A T SRR Missense_Mutation p.K45N 0.30 deleterious(0) probably_damaging(1) TCGA-XF-AAMY-01 17 37564958 37564958 C T MED1 Missense_Mutation p.M1172I 0.13 tolerated_low_confidence(0.39) unknown(0) TCGA-XF-AAMY-01 17 39341002 39341002 G A KRTAP4-1 Silent p.C35C 0.08 TCGA-XF-AAMY-01 17 40315676 40315676 G C KCNH4 Missense_Mutation p.Q809E 0.28 tolerated(0.17) probably_damaging(0.977) TCGA-XF-AAMY-01 17 54671641 54671641 G A NOG Silent p.G19G 0.17 TCGA-XF-AAMY-01 17 72541017 72541017 C T CD300C Missense_Mutation p.R44H 0.17 tolerated(0.28) benign(0.059) TCGA-XF-AAMY-01 19 2290677 2290677 G A LINGO3 Missense_Mutation p.R367C 0.26 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMY-01 19 38980855 38980855 G T RYR1 Missense_Mutation p.S1985I 0.14 benign(0.001) TCGA-XF-AAMY-01 19 41782168 41782168 G A HNRNPUL1 Missense_Mutation p.G251R 0.16 deleterious(0) unknown(0) TCGA-XF-AAMY-01 19 42797368 42797368 C A CIC Silent p.R1244R 0.25 TCGA-XF-AAMY-01 19 44352230 44352230 G A ZNF283 Missense_Mutation p.G493R 0.38 deleterious(0.02) probably_damaging(1) TCGA-XF-AAMY-01 19 52497333 52497333 A C ZNF615 Silent p.T343T 0.24 TCGA-XF-AAMY-01 19 6692964 6692964 C A C3 Missense_Mutation p.D1121Y 0.25 deleterious(0.01) possibly_damaging(0.814) TCGA-XF-AAMY-01 1 152127578 152127578 A G RPTN Missense_Mutation p.I666T 0.14 tolerated(0.07) benign(0.288) TCGA-XF-AAMY-01 1 155408566 155408566 G A ASH1L Missense_Mutation p.H1794Y 0.61 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-XF-AAMY-01 1 158632505 158632505 A T SPTA1 Silent p.T817T 0.44 TCGA-XF-AAMY-01 1 161143666 161143666 C T B4GALT3 Missense_Mutation p.M221I 0.10 tolerated(0.15) benign(0.176) TCGA-XF-AAMY-01 1 171753505 171753505 G T METTL13 Missense_Mutation p.R260L 0.16 tolerated(0.36) benign(0.005) TCGA-XF-AAMY-01 1 175335228 175335228 G C TNR Silent p.T700T 0.54 TCGA-XF-AAMY-01 1 175372315 175372315 C A TNR Missense_Mutation p.V313F 0.16 tolerated(0.26) benign(0.006) TCGA-XF-AAMY-01 1 180063132 180063132 G C CEP350 Missense_Mutation p.R2631T 0.57 benign(0.001) TCGA-XF-AAMY-01 1 180063284 180063284 G C CEP350 Missense_Mutation p.E2682Q 0.64 benign(0.239) TCGA-XF-AAMY-01 1 202698199 202698199 G A KDM5B Missense_Mutation p.R1534C 0.16 deleterious(0.02) benign(0.015) TCGA-XF-AAMY-01 1 23406144 23406144 C T KDM1A Silent p.F718F 0.21 TCGA-XF-AAMY-01 1 242159578 242159578 C T MAP1LC3C Missense_Mutation p.E111K 0.17 tolerated(0.07) benign(0.028) TCGA-XF-AAMY-01 1 248436566 248436566 C T OR2T33 Missense_Mutation p.R184H 0.11 tolerated(0.13) benign(0.177) TCGA-XF-AAMY-01 1 27216278 27216278 C A GPN2 Missense_Mutation p.G104C 0.14 deleterious(0.03) benign(0.086) TCGA-XF-AAMY-01 1 33944803 33944803 C G ZSCAN20 5'UTR 0.18 TCGA-XF-AAMY-01 1 67794066 67794066 A C IL12RB2 Silent p.I221I 0.19 TCGA-XF-AAMY-01 1 86852765 86852765 G A ODF2L Intron 0.48 TCGA-XF-AAMY-01 1 93301834 93301834 C T RPL5 Nonsense_Mutation p.Q138* 0.29 TCGA-XF-AAMY-01 20 34313052 34313052 C T RBM39 Missense_Mutation p.E148K 0.18 deleterious(0.02) possibly_damaging(0.868) TCGA-XF-AAMY-01 20 376879 376879 G A TRIB3 Missense_Mutation p.V208M 0.51 deleterious(0) probably_damaging(0.975) TCGA-XF-AAMY-01 21 10906959 10906959 C G TPTE Missense_Mutation p.E534D 0.07 tolerated(0.05) possibly_damaging(0.836) TCGA-XF-AAMY-01 21 19647617 19647617 G A TMPRSS15 Missense_Mutation p.P934L 0.18 deleterious(0) probably_damaging(1) TCGA-XF-AAMY-01 21 30329695 30329695 C T LTN1 Missense_Mutation p.D997N 0.16 tolerated(0.58) benign(0.001) TCGA-XF-AAMY-01 22 24175856 24175856 G T SMARCB1 Nonsense_Mutation p.E362* 0.76 TCGA-XF-AAMY-01 2 138376009 138376009 G A THSD7B Missense_Mutation p.V1208I 0.33 tolerated(1) unknown(0) TCGA-XF-AAMY-01 2 160755292 160755292 G C LY75-CD302 Missense_Mutation p.L125V 0.23 tolerated(0.48) probably_damaging(0.953) TCGA-XF-AAMY-01 2 203653659 203653659 G C ICA1L Silent p.L379L 0.15 TCGA-XF-AAMY-01 2 228884726 228884726 T A SPHKAP Nonsense_Mutation p.K282* 0.18 TCGA-XF-AAMY-01 2 237300714 237300714 C G IQCA1 Missense_Mutation p.V440L 0.15 deleterious(0) probably_damaging(0.986) TCGA-XF-AAMY-01 2 238285781 238285781 G A COL6A3 Missense_Mutation p.L902F 0.15 probably_damaging(0.917) TCGA-XF-AAMY-01 2 29222308 29222308 C T FAM179A Missense_Mutation p.S134L 0.50 deleterious(0.03) benign(0.32) TCGA-XF-AAMY-01 2 32145937 32145937 G C MEMO1 Silent p.L85L 0.16 TCGA-XF-AAMY-01 2 36704049 36704049 G A CRIM1 Missense_Mutation p.V337I 0.26 tolerated(0.39) probably_damaging(0.972) TCGA-XF-AAMY-01 3 130694280 130694280 G C ATP2C1 Missense_Mutation p.Q540H 0.11 tolerated(0.29) benign(0.003) TCGA-XF-AAMY-01 3 13415230 13415230 G A NUP210 Silent p.F525F 0.39 TCGA-XF-AAMY-01 3 138461453 138461453 C T PIK3CB Missense_Mutation p.D190N 0.10 tolerated(0.4) benign(0.063) TCGA-XF-AAMY-01 3 159606644 159606644 G A IQCJ-SCHIP1 Missense_Mutation p.M486I 0.12 tolerated(0.05) benign(0.28) TCGA-XF-AAMY-01 3 172165709 172165709 G A GHSR Silent p.F165F 0.08 TCGA-XF-AAMY-01 3 195480015 195480015 G A MUC4 Silent p.L5139L 0.68 TCGA-XF-AAMY-01 3 196778475 196778475 C T DLG1 Missense_Mutation p.E883K 0.08 deleterious(0) probably_damaging(0.969) TCGA-XF-AAMY-01 3 47703968 47703968 C T SMARCC1 Missense_Mutation p.E672K 0.22 deleterious(0) possibly_damaging(0.889) TCGA-XF-AAMY-01 3 48630553 48630553 C T COL7A1 Missense_Mutation p.V222M 0.16 unknown(0) TCGA-XF-AAMY-01 3 48728794 48728794 G A IP6K2 Missense_Mutation p.H184Y 0.17 deleterious(0) benign(0.432) TCGA-XF-AAMY-01 3 64580109 64580109 C G ADAMTS9 Missense_Mutation p.C1394S 0.13 deleterious(0) probably_damaging(0.993) TCGA-XF-AAMY-01 4 151119187 151119187 C - DCLK2 Frame_Shift_Del p.S299Qfs*23 0.17 TCGA-XF-AAMY-01 4 20533674 20533674 C T SLIT2 Missense_Mutation p.R561C 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMY-01 4 47565695 47565695 C A ATP10D Missense_Mutation p.D922E 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAMY-01 4 62598759 62598759 A T LPHN3 Missense_Mutation p.I228L 0.36 tolerated(0.11) probably_damaging(0.996) TCGA-XF-AAMY-01 4 88312141 88312141 G C HSD17B11 Missense_Mutation p.P28A 0.26 deleterious(0.01) benign(0.242) TCGA-XF-AAMY-01 5 115146886 115146886 C G CDO1 Missense_Mutation p.L125F 0.46 tolerated(0.12) probably_damaging(0.992) TCGA-XF-AAMY-01 5 95743972 95743972 G C PCSK1 Missense_Mutation p.S384C 0.14 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMY-01 6 121768878 121768880 TTC - GJA1 In_Frame_Del p.S297del 0.25 TCGA-XF-AAMY-01 6 129465190 129465190 G C LAMA2 Missense_Mutation p.D262H 0.38 deleterious(0) probably_damaging(0.997) TCGA-XF-AAMY-01 6 137329868 137329868 C T IL20RA Missense_Mutation p.V198M 0.24 deleterious(0) probably_damaging(0.98) TCGA-XF-AAMY-01 6 149854626 149854629 CTTT AAG PPIL4 Frame_Shift_Del p.K215Lfs*33 0.25 TCGA-XF-AAMY-01 6 33135270 33135270 G A COL11A2 Missense_Mutation p.P1266L 0.18 unknown(0) TCGA-XF-AAMY-01 6 33373216 33373216 G C KIFC1 Silent p.L448L 0.50 TCGA-XF-AAMY-01 6 36343676 36343676 G A ETV7 Silent p.D93D 0.16 TCGA-XF-AAMY-01 6 90368471 90368471 C A MDN1 Missense_Mutation p.G4960V 0.21 unknown(0) TCGA-XF-AAMY-01 6 99819313 99819313 G C COQ3 Missense_Mutation p.L294V 0.23 deleterious(0) possibly_damaging(0.598) TCGA-XF-AAMY-01 7 100246193 100246193 T C ACTL6B Missense_Mutation p.M219V 0.31 tolerated(0.15) benign(0.098) TCGA-XF-AAMY-01 7 103205858 103205858 C T RELN Missense_Mutation p.D1693N 0.16 tolerated(0.26) probably_damaging(0.996) TCGA-XF-AAMY-01 7 107669583 107669583 C T LAMB4 Missense_Mutation p.G1684E 0.10 tolerated(0.18) possibly_damaging(0.669) TCGA-XF-AAMY-01 7 140439656 140439656 C G BRAF Missense_Mutation p.E695Q 0.33 deleterious(0) benign(0.409) TCGA-XF-AAMY-01 7 150439656 150439656 G T GIMAP5 Missense_Mutation p.M143I 0.28 deleterious(0.03) possibly_damaging(0.684) TCGA-XF-AAMY-01 7 38357047 38357047 C T TRGV9 Splice_Site p.X16_splice 0.23 TCGA-XF-AAMY-01 7 4259775 4259775 G A SDK1 Silent p.G1858G 0.17 TCGA-XF-AAMY-01 7 66774619 66774619 C T STAG3L4 RNA 0.33 TCGA-XF-AAMY-01 7 75070275 75070275 C T POM121C Missense_Mutation p.E62K 0.13 deleterious(0.02) probably_damaging(0.925) TCGA-XF-AAMY-01 7 87506005 87506005 G A DBF4 5'UTR 0.18 TCGA-XF-AAMY-01 7 92208648 92208648 C T FAM133B Missense_Mutation p.E62K 0.17 tolerated(0.07) benign(0.029) TCGA-XF-AAMY-01 7 92761717 92761717 C T SAMD9L Missense_Mutation p.D1190N 0.16 tolerated(0.07) benign(0.138) TCGA-XF-AAMY-01 8 100832242 100832242 C T VPS13B Silent p.P2987P 0.23 TCGA-XF-AAMY-01 8 125499332 125499332 G C RNF139 Missense_Mutation p.G481A 0.24 tolerated(0.07) possibly_damaging(0.59) TCGA-XF-AAMY-01 8 125499670 125499670 G A RNF139 Missense_Mutation p.D594N 0.17 tolerated(0.74) benign(0.002) TCGA-XF-AAMY-01 8 68115374 68115374 C A ARFGEF1 Missense_Mutation p.R1691I 0.08 tolerated(0.06) benign(0.002) TCGA-XF-AAMY-01 8 74858903 74858903 G C TCEB1 Missense_Mutation p.L101V 0.11 deleterious(0.01) benign(0.178) TCGA-XF-AAMY-01 8 77767782 77767782 C T ZFHX4 Silent p.F2875F 0.87 TCGA-XF-AAMY-01 8 92032412 92032412 C T TMEM55A Missense_Mutation p.R112Q 0.10 tolerated(1) possibly_damaging(0.494) TCGA-XF-AAMY-01 8 95556054 95556054 C G KIAA1429 Splice_Site p.X60_splice 0.18 TCGA-XF-AAMY-01 9 104189818 104189818 G A ALDOB Silent p.L162L 0.24 TCGA-XF-AAMY-01 9 131346674 131346674 C G SPTAN1 Silent p.L769L 0.34 TCGA-XF-AAMY-01 9 131346793 131346793 C G SPTAN1 Missense_Mutation p.S809C 0.26 deleterious(0) probably_damaging(0.996) TCGA-XF-AAMY-01 9 134363330 134363330 G A PRRC2B Silent p.A2024A 0.28 TCGA-XF-AAMY-01 9 138516426 138516426 G A GLT6D1 Silent p.D116D 0.39 TCGA-XF-AAMY-01 9 33318788 33318788 G A NFX1 Missense_Mutation p.D550N 0.28 tolerated(0.05) benign(0.334) TCGA-XF-AAMY-01 9 5185362 5185362 C T INSL6 Missense_Mutation p.E81K 0.33 tolerated(0.93) benign(0.011) TCGA-XF-AAMY-01 X 149931146 149931146 T C MTMR1 Missense_Mutation p.S648P 0.80 tolerated(0.06) benign(0.004) TCGA-XF-AAMY-01 X 153539296 153539296 G C TKTL1 Missense_Mutation p.D154H 0.57 deleterious(0.02) possibly_damaging(0.867) TCGA-XF-AAMY-01 X 19478199 19478199 C T MAP3K15 Silent p.A264A 0.45 TCGA-XF-AAMY-01 X 3239013 3239013 A G MXRA5 Silent p.S1571S 0.56 TCGA-XF-AAMZ-01 10 103587011 103587011 G A KCNIP2 3'Flank 0.21 TCGA-XF-AAMZ-01 10 105963513 105963513 C T WDR96 Missense_Mutation p.E338K 0.35 tolerated(1) benign(0.001) TCGA-XF-AAMZ-01 10 1060190 1060190 C T GTPBP4 Nonsense_Mutation p.Q516* 0.10 TCGA-XF-AAMZ-01 10 115804639 115804639 G A ADRB1 Missense_Mutation p.E250K 0.14 tolerated(0.06) possibly_damaging(0.689) TCGA-XF-AAMZ-01 10 118225615 118225615 G T PNLIPRP3 Nonsense_Mutation p.E288* 0.10 TCGA-XF-AAMZ-01 10 122626229 122626229 G A WDR11 Missense_Mutation p.M381I 0.06 tolerated(0.29) benign(0.032) TCGA-XF-AAMZ-01 10 13213041 13213041 G C MCM10 Missense_Mutation p.D43H 0.13 deleterious(0) probably_damaging(0.988) TCGA-XF-AAMZ-01 10 13213092 13213092 G A MCM10 Missense_Mutation p.D60N 0.13 tolerated_low_confidence(0.23) benign(0.005) TCGA-XF-AAMZ-01 10 13213117 13213117 G A MCM10 Missense_Mutation p.R68K 0.12 tolerated_low_confidence(0.71) benign(0.001) TCGA-XF-AAMZ-01 10 13213119 13213119 G A MCM10 Missense_Mutation p.D69N 0.12 tolerated_low_confidence(0.22) benign(0.003) TCGA-XF-AAMZ-01 10 13213179 13213179 G C MCM10 Missense_Mutation p.E89Q 0.17 deleterious(0.05) benign(0.014) TCGA-XF-AAMZ-01 10 15210612 15210612 C T NMT2 5'UTR 0.10 TCGA-XF-AAMZ-01 10 35928822 35928822 C T FZD8 Silent p.S512S 0.14 TCGA-XF-AAMZ-01 10 3824197 3824197 C T KLF6 Silent p.L104L 0.06 TCGA-XF-AAMZ-01 10 43871490 43871490 G C FXYD4 Missense_Mutation p.E75Q 0.11 tolerated(0.49) benign(0.403) TCGA-XF-AAMZ-01 10 4883978 4883978 G T AKR1E2 Nonsense_Mutation p.E228* 0.17 TCGA-XF-AAMZ-01 10 88259540 88259540 G C WAPAL Missense_Mutation p.S487C 0.17 tolerated(0.09) possibly_damaging(0.797) TCGA-XF-AAMZ-01 10 96454792 96454792 A T CYP2C18 Missense_Mutation p.K200N 0.28 tolerated(0.35) benign(0.19) TCGA-XF-AAMZ-01 11 111953544 111953544 G T C11orf57 Nonsense_Mutation p.E244* 0.14 TCGA-XF-AAMZ-01 11 22301269 22301269 G C ANO5 Missense_Mutation p.M900I 0.36 tolerated_low_confidence(0.3) benign(0.001) TCGA-XF-AAMZ-01 11 57004122 57004122 G A APLNR Silent p.C119C 0.19 TCGA-XF-AAMZ-01 11 57958200 57958200 C G OR9Q2 Missense_Mutation p.Q80E 0.10 deleterious(0) possibly_damaging(0.574) TCGA-XF-AAMZ-01 11 61978051 61978051 G C SCGB2A1 Silent p.L74L 0.10 TCGA-XF-AAMZ-01 11 68483325 68483325 C T MTL5 Missense_Mutation p.E334K 0.08 tolerated(0.07) benign(0.424) TCGA-XF-AAMZ-01 11 68522403 68522403 C T CPT1A 3'UTR 0.13 TCGA-XF-AAMZ-01 11 68527753 68527753 C A CPT1A Silent p.V694V 0.15 TCGA-XF-AAMZ-01 11 73714813 73714813 C T UCP3 Intron 0.04 TCGA-XF-AAMZ-01 12 105520099 105520099 G A KIAA1033 Missense_Mutation p.D333N 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-XF-AAMZ-01 12 109617040 109617040 A C ACACB Missense_Mutation p.K529Q 0.22 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 12 109617089 109617089 A G ACACB Missense_Mutation p.E545G 0.19 deleterious(0.02) benign(0.155) TCGA-XF-AAMZ-01 12 118533470 118533470 C A VSIG10 Nonsense_Mutation p.E77* 0.14 TCGA-XF-AAMZ-01 12 12332875 12332875 C G LRP6 Missense_Mutation p.E472Q 0.12 deleterious(0) probably_damaging(0.987) TCGA-XF-AAMZ-01 12 133428265 133428265 G C CHFR Missense_Mutation p.F489L 0.15 tolerated(0.47) benign(0.09) TCGA-XF-AAMZ-01 12 2061975 2061975 G C DCP1B Silent p.A377A 0.20 TCGA-XF-AAMZ-01 12 27849619 27849619 G C REP15 Missense_Mutation p.E42Q 0.08 tolerated(0.28) benign(0.303) TCGA-XF-AAMZ-01 12 39751995 39751995 G A KIF21A Silent p.L400L 0.06 TCGA-XF-AAMZ-01 12 48362032 48362032 C T TMEM106C 3'UTR 0.09 TCGA-XF-AAMZ-01 12 5020587 5020587 G A KCNA1 Missense_Mutation p.A15T 0.09 tolerated_low_confidence(0.65) benign(0.029) TCGA-XF-AAMZ-01 12 50498482 50498482 C T GPD1 Missense_Mutation p.T56M 0.10 deleterious(0.03) benign(0.148) TCGA-XF-AAMZ-01 12 53454336 53454336 A G TENC1 Missense_Mutation p.E932G 0.14 tolerated(0.12) possibly_damaging(0.575) TCGA-XF-AAMZ-01 12 57629222 57629222 G T NDUFA4L2 3'UTR 0.22 TCGA-XF-AAMZ-01 12 58020596 58020596 G A B4GALNT1 Silent p.D511D 0.07 TCGA-XF-AAMZ-01 12 60168919 60168919 G T SLC16A7 Silent p.S281S 0.07 TCGA-XF-AAMZ-01 12 93162806 93162806 C T PLEKHG7 Nonsense_Mutation p.R328* 0.08 TCGA-XF-AAMZ-01 13 23904747 23904747 G A SACS Missense_Mutation p.S4423L 0.08 benign(0.014) TCGA-XF-AAMZ-01 13 33110366 33110366 C G N4BP2L2 Intron 0.20 TCGA-XF-AAMZ-01 14 100992341 100992341 C A WDR25 Missense_Mutation p.F412L 0.18 deleterious(0.03) possibly_damaging(0.621) TCGA-XF-AAMZ-01 14 104209113 104209113 C A PPP1R13B Missense_Mutation p.V400L 0.09 tolerated(0.8) benign(0.01) TCGA-XF-AAMZ-01 14 105412943 105412943 C T AHNAK2 Missense_Mutation p.E2949K 0.08 benign(0.001) TCGA-XF-AAMZ-01 14 106237688 106237688 G A IGHG3 Missense_Mutation p.S19F 0.15 deleterious(0.04) benign(0.218) TCGA-XF-AAMZ-01 14 20295790 20295790 C G OR4N2 Missense_Mutation p.F61L 0.10 deleterious(0.03) benign(0.021) TCGA-XF-AAMZ-01 14 20389033 20389033 G A OR4K5 Missense_Mutation p.E90K 0.12 tolerated(1) benign(0) TCGA-XF-AAMZ-01 14 20389116 20389116 G A OR4K5 Silent p.S117S 0.03 TCGA-XF-AAMZ-01 14 22592096 22592096 C T TRAV26-1 Missense_Mutation p.P61S 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-XF-AAMZ-01 14 24030568 24030568 C A AP1G2 Missense_Mutation p.D644Y 0.10 deleterious(0.02) benign(0.248) TCGA-XF-AAMZ-01 14 55818418 55818418 G C FBXO34 Missense_Mutation p.R437T 0.10 tolerated(0.32) benign(0.004) TCGA-XF-AAMZ-01 15 102346600 102346600 G C OR4F6 Missense_Mutation p.Q226H 0.09 tolerated_low_confidence(0.13) benign(0.03) TCGA-XF-AAMZ-01 15 34520658 34520658 G A EMC4 Silent p.Q128Q 0.25 TCGA-XF-AAMZ-01 15 44166532 44166532 C T FRMD5 Missense_Mutation p.E422K 0.19 tolerated(0.73) possibly_damaging(0.453) TCGA-XF-AAMZ-01 15 56388201 56388201 T A RFX7 Silent p.T575T 0.10 TCGA-XF-AAMZ-01 15 72324869 72324869 G C MYO9A Missense_Mutation p.Q301E 0.13 deleterious(0.01) benign(0.031) TCGA-XF-AAMZ-01 15 80137639 80137639 G C ST20-MTHFS Missense_Mutation p.F151L 0.28 deleterious(0.03) benign(0.178) TCGA-XF-AAMZ-01 15 90771881 90771881 G A SEMA4B 3'UTR 0.09 TCGA-XF-AAMZ-01 15 91017158 91017158 C T IQGAP1 Nonsense_Mutation p.R822* 0.06 TCGA-XF-AAMZ-01 15 91328217 91328217 G C BLM Missense_Mutation p.R910T 0.09 deleterious(0) benign(0.41) TCGA-XF-AAMZ-01 15 91328258 91328258 G A BLM Missense_Mutation p.D924N 0.09 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 15 91537642 91537642 C G PRC1 Missense_Mutation p.R2S 0.16 deleterious(0) possibly_damaging(0.893) TCGA-XF-AAMZ-01 16 11931909 11931909 C T RSL1D1 Missense_Mutation p.R403H 0.09 tolerated(0.58) benign(0.007) TCGA-XF-AAMZ-01 16 21210163 21210163 C G ZP2 Missense_Mutation p.E650Q 0.11 tolerated(0.07) benign(0.066) TCGA-XF-AAMZ-01 16 30745886 30745886 G A SRCAP Missense_Mutation p.E2227K 0.10 benign(0.425) TCGA-XF-AAMZ-01 16 46694356 46694356 G C VPS35 3'UTR 0.13 TCGA-XF-AAMZ-01 16 46694554 46694554 G A VPS35 Nonsense_Mutation p.Q741* 0.11 TCGA-XF-AAMZ-01 16 46694559 46694559 G T VPS35 Missense_Mutation p.T739K 0.11 deleterious(0.05) benign(0.034) TCGA-XF-AAMZ-01 16 46696966 46696966 G C VPS35 Missense_Mutation p.Q586E 0.17 tolerated(0.21) possibly_damaging(0.651) TCGA-XF-AAMZ-01 16 67232012 67232012 G C E2F4 Missense_Mutation p.V410L 0.09 tolerated(0.07) benign(0.353) TCGA-XF-AAMZ-01 16 68010679 68010679 C G DPEP3 Splice_Site p.X365_splice 0.12 TCGA-XF-AAMZ-01 16 68011252 68011252 C T DPEP3 Silent p.K338K 0.13 TCGA-XF-AAMZ-01 16 72130728 72130728 C T DHX38 Missense_Mutation p.R111W 0.06 deleterious(0) possibly_damaging(0.876) TCGA-XF-AAMZ-01 16 72174339 72174339 C T PMFBP1 Missense_Mutation p.R260Q 0.17 tolerated(0.15) probably_damaging(1) TCGA-XF-AAMZ-01 16 72831193 72831193 G T ZFHX3 Silent p.L1796L 0.10 TCGA-XF-AAMZ-01 16 81279132 81279132 G A BCMO1 Missense_Mutation p.M39I 0.10 tolerated(0.34) benign(0.05) TCGA-XF-AAMZ-01 16 81929465 81929465 C G PLCG2 Missense_Mutation p.R376G 0.04 deleterious(0.02) possibly_damaging(0.711) TCGA-XF-AAMZ-01 16 85112027 85112027 C T KIAA0513 Silent p.D263D 0.24 TCGA-XF-AAMZ-01 16 89965049 89965049 C A TCF25 Silent p.L369L 0.19 TCGA-XF-AAMZ-01 16 89965217 89965217 C T TCF25 Silent p.I386I 0.20 TCGA-XF-AAMZ-01 17 12666697 12666697 C G MYOCD Missense_Mutation p.F899L 0.10 tolerated(1) benign(0.075) TCGA-XF-AAMZ-01 17 15539571 15539571 C T RP11-385D13.1 Missense_Mutation p.E210K 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.745) TCGA-XF-AAMZ-01 17 17171213 17171213 C T COPS3 Missense_Mutation p.A143T 0.18 deleterious(0.01) benign(0.415) TCGA-XF-AAMZ-01 17 27284533 27284533 T C SEZ6 Missense_Mutation p.D776G 0.14 tolerated(0.05) possibly_damaging(0.81) TCGA-XF-AAMZ-01 17 293246 293246 G T FAM101B Missense_Mutation p.F48L 0.09 deleterious(0.04) possibly_damaging(0.58) TCGA-XF-AAMZ-01 17 41107954 41107954 C G AARSD1 Missense_Mutation p.K233N 0.05 deleterious(0) probably_damaging(0.949) TCGA-XF-AAMZ-01 17 44110783 44110783 C T KANSL1 Missense_Mutation p.E904K 0.09 deleterious(0.01) possibly_damaging(0.775) TCGA-XF-AAMZ-01 17 62290563 62290563 C A TEX2 Nonsense_Mutation p.E339* 0.06 TCGA-XF-AAMZ-01 17 7245741 7245741 C G ACAP1 Missense_Mutation p.L98V 0.16 deleterious(0.01) benign(0.01) TCGA-XF-AAMZ-01 17 8076774 8076774 C T TMEM107 3'Flank 0.12 TCGA-XF-AAMZ-01 18 19395622 19395622 G A MIB1 Missense_Mutation p.E509K 0.13 deleterious(0.01) possibly_damaging(0.672) TCGA-XF-AAMZ-01 18 47110029 47110029 C G LIPG Missense_Mutation p.Q421E 0.17 tolerated(0.41) benign(0.006) TCGA-XF-AAMZ-01 18 74637250 74637250 C T ZNF236 Missense_Mutation p.P1254L 0.11 deleterious(0.03) probably_damaging(1) TCGA-XF-AAMZ-01 18 9886621 9886621 C T TXNDC2 Missense_Mutation p.L49F 0.16 tolerated(0.37) benign(0.101) TCGA-XF-AAMZ-01 19 1085775 1085775 G A HMHA1 Missense_Mutation p.E1077K 0.12 deleterious_low_confidence(0.01) benign(0.422) TCGA-XF-AAMZ-01 19 12575559 12575559 C T ZNF709 Missense_Mutation p.E393K 0.09 tolerated(0.21) possibly_damaging(0.579) TCGA-XF-AAMZ-01 19 14150583 14150583 G A IL27RA Missense_Mutation p.R132Q 0.14 tolerated(0.46) benign(0.002) TCGA-XF-AAMZ-01 19 14875382 14875382 C T EMR2 Missense_Mutation p.G316E 0.22 tolerated(0.14) benign(0.117) TCGA-XF-AAMZ-01 19 33699809 33699809 C T SLC7A10 Silent p.S520S 0.17 TCGA-XF-AAMZ-01 19 36024371 36024371 C T GAPDHS 5'UTR 0.17 TCGA-XF-AAMZ-01 19 36515504 36515504 C T CLIP3 Missense_Mutation p.V238I 0.18 tolerated(0.21) benign(0.004) TCGA-XF-AAMZ-01 19 40541682 40541682 C G ZNF780B Missense_Mutation p.E362Q 0.05 tolerated(0.05) probably_damaging(0.913) TCGA-XF-AAMZ-01 19 44418711 44418711 C - ZNF45 Frame_Shift_Del p.V293Ffs*3 0.17 TCGA-XF-AAMZ-01 19 49216635 49216635 C G MAMSTR Silent p.L379L 0.17 TCGA-XF-AAMZ-01 19 49254077 49254077 G A FUT1 Silent p.Y154Y 0.04 TCGA-XF-AAMZ-01 19 50360312 50360312 C T PTOV1 Silent p.I213I 0.09 TCGA-XF-AAMZ-01 19 5071030 5071030 C G KDM4B Missense_Mutation p.I212M 0.13 probably_damaging(0.986) TCGA-XF-AAMZ-01 19 53057298 53057298 G A ZNF808 Missense_Mutation p.E377K 0.09 deleterious(0.01) benign(0.001) TCGA-XF-AAMZ-01 19 54803223 54803223 C T LILRA3 Missense_Mutation p.D152N 0.16 tolerated(0.23) benign(0.169) TCGA-XF-AAMZ-01 19 56896194 56896194 G A ZNF582 Missense_Mutation p.P198S 0.06 tolerated(0.07) probably_damaging(0.993) TCGA-XF-AAMZ-01 19 58216284 58216284 C T ZNF154 Missense_Mutation p.E33K 0.17 deleterious(0.02) benign(0.188) TCGA-XF-AAMZ-01 19 58563938 58563938 C A ZSCAN1 Silent p.L182L 0.17 TCGA-XF-AAMZ-01 19 58578485 58578485 G C ZNF135 Missense_Mutation p.E235D 0.11 deleterious(0.03) benign(0.205) TCGA-XF-AAMZ-01 19 58849961 58849961 G C ZSCAN22 Missense_Mutation p.D249H 0.12 tolerated(0.31) benign(0.098) TCGA-XF-AAMZ-01 19 58850342 58850342 G T ZSCAN22 Missense_Mutation p.G376W 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 19 804124 804124 C T PTBP1 Silent p.I68I 0.09 TCGA-XF-AAMZ-01 19 8665949 8665949 C G ADAMTS10 Missense_Mutation p.E225Q 0.06 tolerated(0.63) benign(0.001) TCGA-XF-AAMZ-01 19 9492324 9492324 G C ZNF177 Silent p.L439L 0.14 TCGA-XF-AAMZ-01 19 9763565 9763565 C T ZNF562 3'UTR 0.10 TCGA-XF-AAMZ-01 19 9763618 9763618 C G ZNF562 3'UTR 0.09 TCGA-XF-AAMZ-01 1 110950527 110950527 G A LAMTOR5 5'UTR 0.29 TCGA-XF-AAMZ-01 1 111857942 111857942 C T CHIA Missense_Mutation p.S122L 0.16 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 1 112302068 112302068 C T DDX20 Missense_Mutation p.S148F 0.25 deleterious(0.02) probably_damaging(0.992) TCGA-XF-AAMZ-01 1 148008607 148008607 C T NBPF14 Missense_Mutation p.E667K 0.03 tolerated(0.51) probably_damaging(0.996) TCGA-XF-AAMZ-01 1 152057440 152057440 G C TCHHL1 3'UTR 0.11 TCGA-XF-AAMZ-01 1 152085061 152085061 C T TCHH Missense_Mutation p.R211Q 0.16 unknown(0) TCGA-XF-AAMZ-01 1 155730356 155730356 G A GON4L Missense_Mutation p.T1663I 0.22 tolerated(0.13) benign(0.038) TCGA-XF-AAMZ-01 1 156046778 156046778 C T MEX3A Missense_Mutation p.V384M 0.13 tolerated(0.06) probably_damaging(0.971) TCGA-XF-AAMZ-01 1 156906710 156906710 C T ARHGEF11 Missense_Mutation p.E1510K 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-XF-AAMZ-01 1 160209785 160209785 G A DCAF8 Missense_Mutation p.S142L 0.18 tolerated(0.25) benign(0.023) TCGA-XF-AAMZ-01 1 160786645 160786645 T A LY9 Missense_Mutation p.I445N 0.14 tolerated(0.07) benign(0.411) TCGA-XF-AAMZ-01 1 160920349 160920349 G C ITLN2 Missense_Mutation p.I198M 0.03 deleterious(0.01) benign(0.035) TCGA-XF-AAMZ-01 1 16101286 16101286 C G FBLIM1 Missense_Mutation p.F295L 0.07 deleterious(0) probably_damaging(0.916) TCGA-XF-AAMZ-01 1 162368817 162368817 C G SH2D1B Missense_Mutation p.E87Q 0.07 tolerated(0.08) benign(0.209) TCGA-XF-AAMZ-01 1 16534631 16534631 C G ARHGEF19 Missense_Mutation p.E168Q 0.07 deleterious_low_confidence(0.04) benign(0.011) TCGA-XF-AAMZ-01 1 168066295 168066295 G A GPR161 Missense_Mutation p.R204W 0.64 deleterious(0.01) possibly_damaging(0.742) TCGA-XF-AAMZ-01 1 179989198 179989198 G C CEP350 Missense_Mutation p.L763F 0.09 possibly_damaging(0.781) TCGA-XF-AAMZ-01 1 19477075 19477075 C G UBR4 Missense_Mutation p.E2476Q 0.17 benign(0.097) TCGA-XF-AAMZ-01 1 19480387 19480387 C G UBR4 Missense_Mutation p.E2169Q 0.15 probably_damaging(0.998) TCGA-XF-AAMZ-01 1 197128764 197128764 C T ZBTB41 Missense_Mutation p.D819N 0.35 tolerated(0.06) benign(0.03) TCGA-XF-AAMZ-01 1 197147629 197147629 C T ZBTB41 Missense_Mutation p.E564K 0.29 tolerated(0.08) possibly_damaging(0.849) TCGA-XF-AAMZ-01 1 197147643 197147643 C T ZBTB41 Splice_Site p.X559_splice 0.32 TCGA-XF-AAMZ-01 1 197169432 197169432 G C ZBTB41 Missense_Mutation p.P58A 0.09 tolerated_low_confidence(0.09) benign(0.138) TCGA-XF-AAMZ-01 1 201355807 201355807 C G LAD1 Missense_Mutation p.E228Q 0.09 tolerated(0.23) probably_damaging(0.911) TCGA-XF-AAMZ-01 1 202711820 202711820 C G KDM5B Missense_Mutation p.V813L 0.10 tolerated(0.08) benign(0.06) TCGA-XF-AAMZ-01 1 203194885 203194885 C T CHIT1 Missense_Mutation p.A57T 0.09 deleterious(0.02) possibly_damaging(0.673) TCGA-XF-AAMZ-01 1 206651598 206651598 G T IKBKE Missense_Mutation p.S303I 0.07 deleterious(0) possibly_damaging(0.781) TCGA-XF-AAMZ-01 1 216850770 216850770 C G ESRRG Missense_Mutation p.K45N 0.42 deleterious(0) possibly_damaging(0.709) TCGA-XF-AAMZ-01 1 220835326 220835326 G C MARK1 Missense_Mutation p.E736Q 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-XF-AAMZ-01 1 225965602 225965602 C T SRP9 5'UTR 0.21 TCGA-XF-AAMZ-01 1 229667406 229667406 C T ABCB10 Missense_Mutation p.R471K 0.33 deleterious(0.04) benign(0.14) TCGA-XF-AAMZ-01 1 243349355 243349355 C T CEP170 Missense_Mutation p.R431K 0.28 tolerated(0.2) benign(0.007) TCGA-XF-AAMZ-01 1 247875356 247875356 C A OR6F1 Silent p.R234R 0.13 TCGA-XF-AAMZ-01 1 247875357 247875357 C A OR6F1 Missense_Mutation p.R234L 0.13 deleterious(0) possibly_damaging(0.793) TCGA-XF-AAMZ-01 1 26786594 26786594 G A DHDDS Missense_Mutation p.E242K 0.15 tolerated(0.75) benign(0.01) TCGA-XF-AAMZ-01 1 32503557 32503557 C G KHDRBS1 Missense_Mutation p.P343A 0.11 tolerated(0.19) possibly_damaging(0.857) TCGA-XF-AAMZ-01 1 33058612 33058612 G A ZBTB8A Missense_Mutation p.S27N 0.09 benign(0.02) TCGA-XF-AAMZ-01 1 33256819 33256819 G C YARS Missense_Mutation p.L210V 0.07 deleterious(0) possibly_damaging(0.849) TCGA-XF-AAMZ-01 1 33764563 33764563 C G ZNF362 Missense_Mutation p.H393Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMZ-01 1 46657836 46657836 G A POMGNT1 Silent p.I491I 0.08 TCGA-XF-AAMZ-01 1 47028503 47028503 C T MKNK1 Missense_Mutation p.E261K 0.21 deleterious(0) probably_damaging(0.988) TCGA-XF-AAMZ-01 1 60476112 60476112 C A C1orf87 Nonsense_Mutation p.E382* 0.11 TCGA-XF-AAMZ-01 1 7845511 7845511 G C PER3 Missense_Mutation p.D47H 0.07 deleterious(0.01) probably_damaging(0.953) TCGA-XF-AAMZ-01 1 90049142 90049142 C G LRRC8B Missense_Mutation p.I311M 0.07 tolerated(0.46) possibly_damaging(0.603) TCGA-XF-AAMZ-01 1 90180297 90180297 A C LRRC8C Missense_Mutation p.D723A 0.19 tolerated(0.33) benign(0.028) TCGA-XF-AAMZ-01 1 9323957 9323957 C T H6PD Missense_Mutation p.R469W 0.10 deleterious(0) possibly_damaging(0.836) TCGA-XF-AAMZ-01 20 20056234 20056234 C G C20orf26 Missense_Mutation p.P181A 0.10 deleterious(0) probably_damaging(0.993) TCGA-XF-AAMZ-01 20 21209729 21209729 G C PLK1S1 RNA 0.12 TCGA-XF-AAMZ-01 20 25259060 25259060 G T PYGB Missense_Mutation p.D321Y 0.13 deleterious(0) possibly_damaging(0.654) TCGA-XF-AAMZ-01 20 25281503 25281503 G A ABHD12 Intron 0.11 TCGA-XF-AAMZ-01 20 3127577 3127577 G C FASTKD5 Missense_Mutation p.L714V 0.10 deleterious(0) probably_damaging(0.991) TCGA-XF-AAMZ-01 20 3362093 3362093 T C C20orf194 Silent p.L72L 0.08 TCGA-XF-AAMZ-01 20 36560081 36560081 G A VSTM2L Missense_Mutation p.E56K 0.31 deleterious(0.01) possibly_damaging(0.889) TCGA-XF-AAMZ-01 20 3735153 3735153 C A C20orf27 Missense_Mutation p.K130N 0.12 tolerated(0.14) benign(0.385) TCGA-XF-AAMZ-01 20 37623488 37623488 C G DHX35 Missense_Mutation p.R203G 0.09 deleterious(0) probably_damaging(0.937) TCGA-XF-AAMZ-01 20 40084466 40084466 C G CHD6 Missense_Mutation p.E995Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMZ-01 20 4168019 4168019 G A SMOX Missense_Mutation p.E545K 0.14 tolerated(0.4) benign(0.124) TCGA-XF-AAMZ-01 20 44512069 44512069 G T ZSWIM1 Missense_Mutation p.A280S 0.09 tolerated(0.3) benign(0.008) TCGA-XF-AAMZ-01 20 44512080 44512080 C T ZSWIM1 Silent p.F283F 0.09 TCGA-XF-AAMZ-01 20 4837816 4837816 C T SLC23A2 Silent p.K585K 0.05 TCGA-XF-AAMZ-01 20 49508334 49508334 C G ADNP Missense_Mutation p.E973Q 0.05 tolerated_low_confidence(0.32) benign(0.051) TCGA-XF-AAMZ-01 20 57581417 57581417 G A CTSZ Silent p.C89C 0.19 TCGA-XF-AAMZ-01 20 58489040 58489040 C T SYCP2 Missense_Mutation p.D274N 0.26 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 21 30257611 30257611 G A N6AMT1 Silent p.F19F 0.09 TCGA-XF-AAMZ-01 21 32624119 32624119 C T TIAM1 Silent p.K450K 0.08 TCGA-XF-AAMZ-01 21 37721669 37721669 C T MORC3 Missense_Mutation p.H356Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMZ-01 21 42748784 42748784 G A MX2 5'UTR 0.09 TCGA-XF-AAMZ-01 22 18028504 18028504 A G CECR2 Missense_Mutation p.Y1155C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAMZ-01 22 19163736 19163736 G A SLC25A1 Silent p.P281P 0.06 TCGA-XF-AAMZ-01 22 21075610 21075610 C G PI4KA Missense_Mutation p.D1698H 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 22 26838528 26838528 G A ASPHD2 Silent p.A330A 0.08 TCGA-XF-AAMZ-01 22 30722780 30722780 C G TBC1D10A Missense_Mutation p.D31H 0.12 deleterious(0.02) possibly_damaging(0.817) TCGA-XF-AAMZ-01 22 31302402 31302402 G A OSBP2 3'UTR 0.38 TCGA-XF-AAMZ-01 22 32174082 32174082 C T DEPDC5 Intron 0.10 TCGA-XF-AAMZ-01 22 41739487 41739487 G A ZC3H7B Missense_Mutation p.G456S 0.08 tolerated(0.1) possibly_damaging(0.843) TCGA-XF-AAMZ-01 22 43575866 43575866 C G TTLL12 Silent p.L229L 0.15 TCGA-XF-AAMZ-01 2 101971819 101971819 G A CREG2 Silent p.I207I 0.16 TCGA-XF-AAMZ-01 2 108489287 108489287 T C RGPD4 Silent p.D1609D 0.15 TCGA-XF-AAMZ-01 2 152107755 152107755 G C RBM43 Missense_Mutation p.L247V 0.07 tolerated(0.45) benign(0.093) TCGA-XF-AAMZ-01 2 152222693 152222693 G A TNFAIP6 Missense_Mutation p.R119K 0.07 tolerated(1) benign(0.005) TCGA-XF-AAMZ-01 2 152276738 152276738 G C RIF1 Missense_Mutation p.E180Q 0.10 tolerated(0.06) probably_damaging(0.996) TCGA-XF-AAMZ-01 2 152324596 152324596 C A RIF1 Missense_Mutation p.S2228Y 0.10 deleterious(0.02) possibly_damaging(0.707) TCGA-XF-AAMZ-01 2 170493671 170493671 G C PPIG Missense_Mutation p.E635Q 0.08 tolerated_low_confidence(0.39) unknown(0) TCGA-XF-AAMZ-01 2 170493734 170493734 G C PPIG Missense_Mutation p.E656Q 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-XF-AAMZ-01 2 170493929 170493929 G C PPIG Missense_Mutation p.E721Q 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-XF-AAMZ-01 2 174130948 174130948 C G MLTK Missense_Mutation p.Q625E 0.12 tolerated_low_confidence(0.12) benign(0.062) TCGA-XF-AAMZ-01 2 178545577 178545577 G C PDE11A Missense_Mutation p.I800M 0.11 tolerated(0.17) benign(0.167) TCGA-XF-AAMZ-01 2 179417407 179417407 C A TTN Nonsense_Mutation p.E30074* 0.19 TCGA-XF-AAMZ-01 2 179641888 179641888 T A TTN Missense_Mutation p.Y1601F 0.12 TCGA-XF-AAMZ-01 2 179664232 179664232 G A TTN Missense_Mutation p.P299L 0.09 TCGA-XF-AAMZ-01 2 197674106 197674106 G T C2orf66 Silent p.I2I 0.15 TCGA-XF-AAMZ-01 2 214794779 214794779 G A SPAG16 Missense_Mutation p.R437H 0.07 tolerated(1) benign(0.002) TCGA-XF-AAMZ-01 2 218745672 218745672 G A TNS1 Missense_Mutation p.R335C 0.12 deleterious(0) probably_damaging(0.973) TCGA-XF-AAMZ-01 2 218947875 218947875 G A RUFY4 Silent p.Q486Q 0.12 TCGA-XF-AAMZ-01 2 219875692 219875692 T G CCDC108 Silent p.S1328S 0.10 TCGA-XF-AAMZ-01 2 227732028 227732028 C A RHBDD1 Nonsense_Mutation p.S187* 0.07 TCGA-XF-AAMZ-01 2 234959456 234959456 C T SPP2 Missense_Mutation p.T9M 0.07 tolerated(0.12) benign(0) TCGA-XF-AAMZ-01 2 29222194 29222194 C T FAM179A Missense_Mutation p.A96V 0.25 tolerated(0.13) benign(0.014) TCGA-XF-AAMZ-01 2 31178533 31178533 C T GALNT14 Missense_Mutation p.C207Y 0.13 deleterious(0) probably_damaging(0.981) TCGA-XF-AAMZ-01 2 71795388 71795388 G T DYSF Missense_Mutation p.K928N 0.15 deleterious(0) benign(0.421) TCGA-XF-AAMZ-01 2 73518797 73518797 G A EGR4 Missense_Mutation p.R520C 0.11 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMZ-01 2 74328835 74328835 G T TET3 Silent p.S1505S 0.10 TCGA-XF-AAMZ-01 2 8891728 8891728 C T KIDINS220 Missense_Mutation p.E1020K 0.11 deleterious(0) probably_damaging(0.998) TCGA-XF-AAMZ-01 3 113753890 113753890 C T KIAA1407 Missense_Mutation p.E234K 0.09 deleterious(0) probably_damaging(0.943) TCGA-XF-AAMZ-01 3 121395812 121395812 G C GOLGB1 Silent p.L3035L 0.08 TCGA-XF-AAMZ-01 3 121396153 121396153 G C GOLGB1 Silent p.L3006L 0.09 TCGA-XF-AAMZ-01 3 122808040 122808040 C T PDIA5 Missense_Mutation p.S23F 0.09 deleterious(0.01) possibly_damaging(0.474) TCGA-XF-AAMZ-01 3 124449419 124449419 C T UMPS Missense_Mutation p.S34F 0.12 deleterious(0) possibly_damaging(0.834) TCGA-XF-AAMZ-01 3 129137244 129137244 C T EFCAB12 Silent p.Q178Q 0.23 TCGA-XF-AAMZ-01 3 129813257 129813257 C G AC083906.2 5'Flank 0.12 TCGA-XF-AAMZ-01 3 132394685 132394685 C T UBA5 Missense_Mutation p.S350L 0.11 tolerated(0.09) benign(0.002) TCGA-XF-AAMZ-01 3 142030340 142030340 C T XRN1 3'UTR 0.07 TCGA-XF-AAMZ-01 3 15301295 15301295 G A SH3BP5 Silent p.L214L 0.11 TCGA-XF-AAMZ-01 3 15762520 15762520 C T ANKRD28 Missense_Mutation p.E270K 0.09 tolerated(0.57) benign(0.067) TCGA-XF-AAMZ-01 3 158415544 158415544 C T RARRES1 Missense_Mutation p.E270K 0.16 deleterious(0.02) possibly_damaging(0.828) TCGA-XF-AAMZ-01 3 16345055 16345055 G C OXNAD1 Missense_Mutation p.E309Q 0.10 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 3 168830608 168830608 C G MECOM Missense_Mutation p.L725F 0.07 deleterious(0.01) possibly_damaging(0.735) TCGA-XF-AAMZ-01 3 168830631 168830631 C G MECOM Missense_Mutation p.E718Q 0.07 deleterious(0.03) possibly_damaging(0.898) TCGA-XF-AAMZ-01 3 172013150 172013150 C G FNDC3B Intron 0.10 TCGA-XF-AAMZ-01 3 183518262 183518262 G A YEATS2 Missense_Mutation p.E1112K 0.08 deleterious(0.01) possibly_damaging(0.633) TCGA-XF-AAMZ-01 3 183901286 183901286 C G AP2M1 Missense_Mutation p.S397C 0.10 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 3 184297702 184297702 G A EPHB3 Missense_Mutation p.A718T 0.16 deleterious(0.01) possibly_damaging(0.839) TCGA-XF-AAMZ-01 3 184700418 184700418 C T VPS8 Missense_Mutation p.P1162L 0.08 tolerated(0.35) benign(0.002) TCGA-XF-AAMZ-01 3 194165455 194165455 G A ATP13A3 Nonsense_Mutation p.R520* 0.30 TCGA-XF-AAMZ-01 3 196749847 196749847 C T MFI2 Missense_Mutation p.D209N 0.05 tolerated(0.31) benign(0.148) TCGA-XF-AAMZ-01 3 33458307 33458307 C A UBP1 Silent p.R95R 0.06 TCGA-XF-AAMZ-01 3 38317440 38317440 C G SLC22A13 Missense_Mutation p.L364V 0.18 deleterious(0.03) possibly_damaging(0.654) TCGA-XF-AAMZ-01 3 42956704 42956704 G C ZNF662 Missense_Mutation p.R406T 0.09 deleterious(0) probably_damaging(0.995) TCGA-XF-AAMZ-01 3 44684309 44684309 G C ZNF197 Missense_Mutation p.E563Q 0.06 deleterious(0) probably_damaging(0.975) TCGA-XF-AAMZ-01 3 44684377 44684377 G C ZNF197 Missense_Mutation p.Q585H 0.09 deleterious(0) possibly_damaging(0.462) TCGA-XF-AAMZ-01 3 44685051 44685051 G C ZNF197 Missense_Mutation p.R810T 0.09 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 3 44854636 44854636 G C KIF15 Missense_Mutation p.E783Q 0.10 tolerated(0.33) benign(0.013) TCGA-XF-AAMZ-01 3 47049918 47049918 G A NBEAL2 Missense_Mutation p.R2622H 0.16 deleterious(0.04) benign(0.072) TCGA-XF-AAMZ-01 3 49759695 49759695 G A GMPPB Missense_Mutation p.S246L 0.19 tolerated(0.1) benign(0.002) TCGA-XF-AAMZ-01 3 52621369 52621369 C T PBRM1 Silent p.K1016K 0.10 TCGA-XF-AAMZ-01 3 88189890 88189890 C T ZNF654 Missense_Mutation p.S477F 0.11 deleterious(0) possibly_damaging(0.905) TCGA-XF-AAMZ-01 4 123534024 123534024 G C IL21 Missense_Mutation p.F140L 0.15 tolerated(1) benign(0) TCGA-XF-AAMZ-01 4 126412188 126412188 C A FAT4 Silent p.T4737T 0.17 TCGA-XF-AAMZ-01 4 175580279 175580279 C T GLRA3 Missense_Mutation p.E333K 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 4 183713484 183713484 G C TENM3 Missense_Mutation p.D1887H 0.08 deleterious(0.01) probably_damaging(0.953) TCGA-XF-AAMZ-01 4 7043426 7043426 C A CCDC96 Nonsense_Mutation p.E414* 0.19 TCGA-XF-AAMZ-01 4 72897779 72897779 C T NPFFR2 Missense_Mutation p.S54F 0.13 deleterious_low_confidence(0.04) benign(0) TCGA-XF-AAMZ-01 4 73184366 73184366 C G ADAMTS3 Missense_Mutation p.E470Q 0.10 tolerated(0.44) benign(0.059) TCGA-XF-AAMZ-01 4 85695995 85695995 G A WDFY3 Missense_Mutation p.P1578S 0.29 tolerated(0.06) benign(0.014) TCGA-XF-AAMZ-01 4 861181 861181 G A GAK Missense_Mutation p.S812F 0.07 tolerated(0.35) benign(0.057) TCGA-XF-AAMZ-01 5 100147715 100147715 C G ST8SIA4 Missense_Mutation p.D306H 0.19 probably_damaging(0.915) TCGA-XF-AAMZ-01 5 11397296 11397296 C G CTNND2 Missense_Mutation p.Q153H 0.10 tolerated(0.23) probably_damaging(0.921) TCGA-XF-AAMZ-01 5 140175057 140175057 T C PCDHA2 Missense_Mutation p.Y170H 0.10 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-XF-AAMZ-01 5 140763839 140763839 C G PCDHGA7 Nonsense_Mutation p.S458* 0.09 TCGA-XF-AAMZ-01 5 140768264 140768264 G A PCDHGB4 Silent p.E271E 0.06 TCGA-XF-AAMZ-01 5 140811520 140811520 C T PCDHGA12 Silent p.Y398Y 0.13 TCGA-XF-AAMZ-01 5 153054128 153054128 G A GRIA1 Silent p.V266V 0.06 TCGA-XF-AAMZ-01 5 168006300 168006300 G A PANK3 5'UTR 0.46 TCGA-XF-AAMZ-01 5 170692835 170692835 C T RANBP17 Missense_Mutation p.P976L 0.10 deleterious(0.04) benign(0.001) TCGA-XF-AAMZ-01 5 176053481 176053481 C T SNCB Missense_Mutation p.G67E 0.11 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 5 35876212 35876212 C T IL7R Missense_Mutation p.S335F 0.08 deleterious(0.03) possibly_damaging(0.771) TCGA-XF-AAMZ-01 5 37183334 37183334 G A C5orf42 Missense_Mutation p.S1650L 0.11 tolerated(0.05) possibly_damaging(0.713) TCGA-XF-AAMZ-01 5 37183433 37183433 G C C5orf42 Missense_Mutation p.S1617C 0.07 tolerated(0.05) possibly_damaging(0.532) TCGA-XF-AAMZ-01 6 102124637 102124637 C A GRIK2 Silent p.I227I 0.16 TCGA-XF-AAMZ-01 6 109714030 109714030 C G PPIL6 Nonstop_Mutation p.*338Sext*8 0.12 TCGA-XF-AAMZ-01 6 21231200 21231200 C T CDKAL1 Missense_Mutation p.A557V 0.17 tolerated_low_confidence(0.31) benign(0.001) TCGA-XF-AAMZ-01 6 22569747 22569747 C T HDGFL1 5'Flank 0.59 TCGA-XF-AAMZ-01 6 29080385 29080385 G T OR2J3 Missense_Mutation p.V240L 0.23 deleterious(0.02) benign(0.018) TCGA-XF-AAMZ-01 6 30121796 30121796 G T TRIM10 Missense_Mutation p.P466T 0.20 deleterious(0) probably_damaging(0.951) TCGA-XF-AAMZ-01 6 33036808 33036808 G C HLA-DPA1 Missense_Mutation p.L206V 0.09 tolerated(0.05) possibly_damaging(0.524) TCGA-XF-AAMZ-01 6 36979561 36979561 A T FGD2 Missense_Mutation p.N153I 0.10 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 6 42980715 42980715 C A MEA1 Nonsense_Mutation p.E119* 0.12 TCGA-XF-AAMZ-01 6 45870848 45870848 C T CLIC5 Missense_Mutation p.A404T 0.10 deleterious(0) probably_damaging(0.985) TCGA-XF-AAMZ-01 6 70070975 70070975 G C BAI3 Missense_Mutation p.L1270F 0.09 tolerated(0.07) benign(0.231) TCGA-XF-AAMZ-01 6 7378960 7378960 G C CAGE1 Missense_Mutation p.L193V 0.18 tolerated(0.08) probably_damaging(0.953) TCGA-XF-AAMZ-01 6 7580126 7580126 C G DSP Missense_Mutation p.L1235V 0.12 benign(0.174) TCGA-XF-AAMZ-01 6 7580810 7580810 G A DSP Missense_Mutation p.V1463I 0.08 benign(0) TCGA-XF-AAMZ-01 7 110764585 110764585 C G LRRN3 Nonsense_Mutation p.S586* 0.11 TCGA-XF-AAMZ-01 7 138603009 138603009 C T KIAA1549 Missense_Mutation p.V455M 0.14 tolerated(0.13) benign(0.218) TCGA-XF-AAMZ-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.10 tolerated(0.1) benign(0.189) TCGA-XF-AAMZ-01 7 19765181 19765181 C G TMEM196 Missense_Mutation p.E139Q 0.17 tolerated(0.21) unknown(0) TCGA-XF-AAMZ-01 7 21628248 21628248 G A DNAH11 Missense_Mutation p.R656H 0.12 benign(0.001) TCGA-XF-AAMZ-01 7 31378020 31378020 C T NEUROD6 Missense_Mutation p.G288D 0.31 deleterious(0.03) probably_damaging(0.959) TCGA-XF-AAMZ-01 7 55459488 55459488 C G LANCL2 Missense_Mutation p.I69M 0.14 tolerated(0.08) benign(0.046) TCGA-XF-AAMZ-01 7 80108170 80108170 C T GNAT3 Missense_Mutation p.D150N 0.13 deleterious(0) probably_damaging(0.987) TCGA-XF-AAMZ-01 7 81799874 81799874 C A CACNA2D1 Missense_Mutation p.D116Y 0.12 deleterious(0.04) possibly_damaging(0.865) TCGA-XF-AAMZ-01 7 86548557 86548557 T C KIAA1324L Missense_Mutation p.N490S 0.11 tolerated(0.41) benign(0.003) TCGA-XF-AAMZ-01 7 91731955 91731955 C T AKAP9 Silent p.L3715L 0.25 TCGA-XF-AAMZ-01 7 99170672 99170672 G A ZNF655 Missense_Mutation p.R349H 0.58 tolerated(0.19) possibly_damaging(0.715) TCGA-XF-AAMZ-01 7 99754981 99754981 G A C7orf43 Intron 0.11 TCGA-XF-AAMZ-01 8 113702259 113702259 C T CSMD3 Missense_Mutation p.G665S 0.06 tolerated(0.09) probably_damaging(1) TCGA-XF-AAMZ-01 8 12042882 12042882 C T FAM86B1 Intron 0.14 TCGA-XF-AAMZ-01 8 120606089 120606089 A G ENPP2 Silent p.P380P 0.08 TCGA-XF-AAMZ-01 8 121013828 121013828 G A DEPTOR Silent p.R223R 0.14 TCGA-XF-AAMZ-01 8 17422708 17422708 G A SLC7A2 3'UTR 0.21 TCGA-XF-AAMZ-01 8 21978696 21978696 C T HR Missense_Mutation p.R750Q 0.06 tolerated(0.15) benign(0.004) TCGA-XF-AAMZ-01 8 24771450 24771450 G A NEFM Silent p.V48V 0.18 TCGA-XF-AAMZ-01 8 35453089 35453089 G C UNC5D Missense_Mutation p.E162Q 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-XF-AAMZ-01 8 37797455 37797455 G T GOT1L1 Missense_Mutation p.N31K 0.15 tolerated(1) benign(0.006) TCGA-XF-AAMZ-01 8 76465354 76465354 T C HNF4G Silent p.S179S 0.08 TCGA-XF-AAMZ-01 9 102814809 102814809 C T ERP44 Missense_Mutation p.R59H 0.09 deleterious(0) possibly_damaging(0.534) TCGA-XF-AAMZ-01 9 116299150 116299150 G C RGS3 Missense_Mutation p.E663D 0.32 tolerated(0.51) benign(0.08) TCGA-XF-AAMZ-01 9 117835997 117835997 T A TNC Missense_Mutation p.R1033S 0.14 tolerated(0.42) benign(0.217) TCGA-XF-AAMZ-01 9 127650667 127650667 C G GOLGA1 Silent p.S590S 0.30 TCGA-XF-AAMZ-01 9 130658570 130658570 C T ST6GALNAC6 Missense_Mutation p.R23H 0.36 benign(0.001) TCGA-XF-AAMZ-01 9 131702737 131702737 G C PHYHD1 Missense_Mutation p.W175C 0.11 tolerated(0.15) benign(0.424) TCGA-XF-AAMZ-01 9 132565547 132565547 C T TOR1B Missense_Mutation p.A19V 0.31 tolerated(0.18) unknown(0) TCGA-XF-AAMZ-01 9 139847415 139847415 C T LCN12 Silent p.N62N 0.19 TCGA-XF-AAMZ-01 9 19576938 19576938 C T SLC24A2 Silent p.G404G 0.09 TCGA-XF-AAMZ-01 9 6012363 6012363 A T RANBP6 Nonsense_Mutation p.L1082* 0.14 TCGA-XF-AAMZ-01 9 80343552 80343552 C G GNAQ Missense_Mutation p.R256T 0.10 tolerated(0.29) benign(0.237) TCGA-XF-AAMZ-01 9 91972404 91972404 G A SECISBP2 Missense_Mutation p.R731H 0.24 tolerated(0.06) possibly_damaging(0.828) TCGA-XF-AAMZ-01 9 95609457 95609457 G A ZNF484 Missense_Mutation p.R540W 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAMZ-01 X 101818925 101818925 G A NXF4 RNA 0.11 TCGA-XF-AAMZ-01 X 105159728 105159728 G C NRK Missense_Mutation p.E787Q 0.09 deleterious(0.02) possibly_damaging(0.883) TCGA-XF-AAMZ-01 X 131212726 131212726 C T FRMD7 Missense_Mutation p.R440K 0.17 tolerated(0.17) benign(0.011) TCGA-XF-AAMZ-01 X 13753386 13753386 C T OFD1 Missense_Mutation p.A11V 0.14 tolerated(0.39) benign(0.146) TCGA-XF-AAMZ-01 X 150348406 150348406 C T GPR50 Silent p.F117F 0.11 TCGA-XF-AAMZ-01 X 153714142 153714142 C A UBL4A Missense_Mutation p.D111Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-AAMZ-01 X 153717065 153717065 G C SLC10A3 Missense_Mutation p.S72C 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-XF-AAMZ-01 X 19554542 19554542 G C SH3KBP1 Nonsense_Mutation p.S664* 0.17 TCGA-XF-AAMZ-01 X 41060386 41060386 G C USP9X Silent p.L1559L 0.08 TCGA-XF-AAMZ-01 X 45051120 45051120 G C CXorf36 Nonsense_Mutation p.S125* 0.13 TCGA-XF-AAMZ-01 X 48457101 48457101 G A WDR13 Intron 0.11 TCGA-XF-AAMZ-01 X 48678570 48678570 C T HDAC6 Silent p.L749L 0.16 TCGA-XF-AAMZ-01 X 49070723 49070723 C G CACNA1F Missense_Mutation p.E1213Q 0.18 tolerated(0.32) benign(0.246) TCGA-XF-AAMZ-01 X 54574791 54574791 C T GNL3L Missense_Mutation p.R254C 0.14 deleterious(0.03) benign(0.091) TCGA-XF-AAMZ-01 X 63411958 63411958 A G AMER1 Silent p.D403D 0.23 TCGA-XF-AAMZ-01 X 70338695 70338695 C G MED12 Missense_Mutation p.Q31E 0.15 possibly_damaging(0.599) TCGA-XF-AAMZ-01 X 71427661 71427661 G T ERCC6L Missense_Mutation p.A319E 0.05 tolerated(0.62) benign(0.006) TCGA-XF-AAMZ-01 X 71800983 71800983 C T PHKA1 Missense_Mutation p.A1181T 0.15 tolerated(0.08) benign(0.024) TCGA-XF-AAMZ-01 X 77224501 77224501 G T PGAM4 Missense_Mutation p.T212N 0.07 tolerated(0.12) benign(0.049) TCGA-XF-AAMZ-01 X 78011238 78011238 T G LPAR4 Missense_Mutation p.I291S 0.07 tolerated(0.16) benign(0.103) TCGA-XF-AAMZ-01 X 96203943 96203943 G T DIAPH2 Nonsense_Mutation p.E507* 0.06 TCGA-XF-AAN0-01 10 101637013 101637013 G A DNMBP Silent p.L1543L 0.24 TCGA-XF-AAN0-01 10 104165236 104165236 G A PSD Silent p.V731V 0.23 TCGA-XF-AAN0-01 10 105642436 105642436 C G OBFC1 3'UTR 0.35 TCGA-XF-AAN0-01 10 105793736 105793736 C A COL17A1 Nonsense_Mutation p.E1375* 0.36 TCGA-XF-AAN0-01 10 105819884 105819884 G A COL17A1 Silent p.I378I 0.38 TCGA-XF-AAN0-01 10 106113570 106113570 C T CCDC147 5'UTR 0.40 TCGA-XF-AAN0-01 10 1063203 1063203 G C GTPBP4 3'UTR 0.28 TCGA-XF-AAN0-01 10 112053887 112053887 G A SMNDC1 3'UTR 0.37 TCGA-XF-AAN0-01 10 112053929 112053929 G A SMNDC1 Silent p.V232V 0.26 TCGA-XF-AAN0-01 10 123846221 123846221 C T TACC2 Silent p.L1402L 0.39 TCGA-XF-AAN0-01 10 129906089 129906089 C T MKI67 Missense_Mutation p.E1339K 0.40 tolerated(1) benign(0) TCGA-XF-AAN0-01 10 129907316 129907316 C T MKI67 Missense_Mutation p.E930K 0.37 deleterious(0.04) probably_damaging(0.94) TCGA-XF-AAN0-01 10 13165999 13165999 G A OPTN Missense_Mutation p.G296E 0.26 deleterious(0.01) probably_damaging(1) TCGA-XF-AAN0-01 10 15649677 15649677 C G ITGA8 Missense_Mutation p.R588P 0.37 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN0-01 10 18276416 18276416 T C SLC39A12 Missense_Mutation p.Y369H 0.43 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 10 24874912 24874912 C T ARHGAP21 Missense_Mutation p.E1436K 0.35 deleterious(0) probably_damaging(0.979) TCGA-XF-AAN0-01 10 26432424 26432424 G A MYO3A Silent p.E770E 0.41 TCGA-XF-AAN0-01 10 28884771 28884771 C T WAC Silent p.H240H 0.33 TCGA-XF-AAN0-01 10 30317490 30317490 C T KIAA1462 Silent p.V529V 0.21 TCGA-XF-AAN0-01 10 35896766 35896766 C T GJD4 Missense_Mutation p.R109C 0.45 tolerated(0.17) benign(0) TCGA-XF-AAN0-01 10 45652471 45652471 G C RP11-445N18.7 RNA 0.22 TCGA-XF-AAN0-01 10 45799112 45799112 C G OR13A1 Missense_Mutation p.Q253H 0.24 tolerated(0.06) benign(0.035) TCGA-XF-AAN0-01 10 70730032 70730032 C G DDX21 Missense_Mutation p.Q438E 0.35 tolerated(0.44) benign(0.001) TCGA-XF-AAN0-01 10 74890529 74890529 G A NUDT13 Silent p.L309L 0.33 TCGA-XF-AAN0-01 10 82280130 82280130 G A TSPAN14 3'UTR 0.33 TCGA-XF-AAN0-01 10 89501061 89501061 G A PAPSS2 Missense_Mutation p.D386N 0.40 deleterious(0) possibly_damaging(0.893) TCGA-XF-AAN0-01 10 97074765 97074765 G A SORBS1 3'UTR 0.25 TCGA-XF-AAN0-01 10 98988975 98988975 G C ARHGAP19 Missense_Mutation p.S468C 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.566) TCGA-XF-AAN0-01 11 111750115 111750115 G C C11orf1 5'UTR 0.33 TCGA-XF-AAN0-01 11 117162452 117162452 G C BACE1 Silent p.V306V 0.07 TCGA-XF-AAN0-01 11 118243303 118243303 C T UBE4A Missense_Mutation p.L215F 0.40 tolerated(0.06) probably_damaging(0.953) TCGA-XF-AAN0-01 11 12265655 12265655 G C MICAL2 Missense_Mutation p.R927T 0.36 tolerated_low_confidence(0.18) benign(0.07) TCGA-XF-AAN0-01 11 123676984 123676984 A G OR6M1 Missense_Mutation p.L25P 0.24 deleterious(0) probably_damaging(0.993) TCGA-XF-AAN0-01 11 1908788 1908788 C T LSP1 Missense_Mutation p.P467S 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-XF-AAN0-01 11 26714071 26714071 G A SLC5A12 Missense_Mutation p.S373F 0.24 deleterious(0) probably_damaging(0.963) TCGA-XF-AAN0-01 11 31287129 31287129 T C DCDC1 Missense_Mutation p.I327V 0.13 tolerated(0.48) benign(0) TCGA-XF-AAN0-01 11 44950727 44950727 T C TSPAN18 Nonstop_Mutation p.*249Qext*7 0.30 TCGA-XF-AAN0-01 11 47765546 47765546 G A FNBP4 Missense_Mutation p.S472F 0.42 deleterious(0) probably_damaging(0.959) TCGA-XF-AAN0-01 11 48510440 48510440 C G OR4A47 Missense_Mutation p.F32L 0.12 tolerated_low_confidence(0.14) benign(0.005) TCGA-XF-AAN0-01 11 49830185 49830185 G A RP11-707M1.1 Intron 0.32 TCGA-XF-AAN0-01 11 55873139 55873139 G A OR8H2 Silent p.L207L 0.24 TCGA-XF-AAN0-01 11 56000051 56000051 C A OR5T2 Missense_Mutation p.S204I 0.04 deleterious(0.03) probably_damaging(0.93) TCGA-XF-AAN0-01 11 561798 561798 G T RASSF7 Silent p.L10L 0.25 TCGA-XF-AAN0-01 11 5969053 5969053 G A OR56A3 Missense_Mutation p.M159I 0.19 tolerated(0.08) benign(0) TCGA-XF-AAN0-01 11 64064417 64064417 C T KCNK4 Missense_Mutation p.S86L 0.13 deleterious(0) possibly_damaging(0.88) TCGA-XF-AAN0-01 11 64064472 64064472 C T KCNK4 Silent p.I104I 0.15 TCGA-XF-AAN0-01 11 64064640 64064640 C A KCNK4 Silent p.I121I 0.18 TCGA-XF-AAN0-01 11 64622176 64622176 C T EHD1 Missense_Mutation p.G412S 0.39 tolerated(0.07) benign(0.131) TCGA-XF-AAN0-01 11 64622201 64622201 C T EHD1 Silent p.L403L 0.40 TCGA-XF-AAN0-01 11 64622854 64622854 C G EHD1 Missense_Mutation p.Q340H 0.31 tolerated(0.12) benign(0) TCGA-XF-AAN0-01 11 65272325 65272325 G C MALAT1 RNA 0.43 TCGA-XF-AAN0-01 11 65272480 65272480 G A MALAT1 RNA 0.20 TCGA-XF-AAN0-01 11 65410012 65410012 C T SIPA1 Silent p.L296L 0.36 TCGA-XF-AAN0-01 11 67766695 67766695 G C UNC93B1 Missense_Mutation p.S212C 0.11 tolerated(0.13) possibly_damaging(0.849) TCGA-XF-AAN0-01 11 67766749 67766749 G C UNC93B1 Missense_Mutation p.S194C 0.11 tolerated(0.05) possibly_damaging(0.478) TCGA-XF-AAN0-01 11 67925086 67925086 G A SUV420H1 3'UTR 0.25 TCGA-XF-AAN0-01 11 67925089 67925089 G A SUV420H1 3'UTR 0.25 TCGA-XF-AAN0-01 11 67925102 67925102 G A SUV420H1 3'UTR 0.22 TCGA-XF-AAN0-01 11 70013454 70013454 G A ANO1 Missense_Mutation p.E720K 0.37 deleterious(0.03) possibly_damaging(0.521) TCGA-XF-AAN0-01 11 71668300 71668300 G A RNF121 Missense_Mutation p.E31K 0.16 deleterious(0.02) benign(0.124) TCGA-XF-AAN0-01 11 74547155 74547155 C T RNF169 Missense_Mutation p.H503Y 0.12 tolerated_low_confidence(1) benign(0) TCGA-XF-AAN0-01 11 75902691 75902691 C A WNT11 Missense_Mutation p.K269N 0.06 tolerated(0.35) benign(0.138) TCGA-XF-AAN0-01 11 764430 764430 G A TALDO1 Silent p.L326L 0.65 TCGA-XF-AAN0-01 11 793545 793545 G C SLC25A22 Missense_Mutation p.Q93E 0.32 tolerated(0.27) benign(0.158) TCGA-XF-AAN0-01 11 85435076 85435076 G A SYTL2 Silent p.S808S 0.14 TCGA-XF-AAN0-01 11 8947109 8947109 G A C11orf16 Missense_Mutation p.P369S 0.19 tolerated(0.32) probably_damaging(0.921) TCGA-XF-AAN0-01 11 94113524 94113524 C G GPR83 Missense_Mutation p.E355Q 0.17 deleterious(0.04) benign(0.217) TCGA-XF-AAN0-01 11 94230225 94230225 G A ANKRD49 Intron 0.44 TCGA-XF-AAN0-01 11 94563282 94563282 G A AMOTL1 Missense_Mutation p.E494K 0.27 deleterious(0) benign(0.146) TCGA-XF-AAN0-01 12 109505358 109505358 G A USP30 Missense_Mutation p.E136K 0.45 deleterious(0.05) possibly_damaging(0.676) TCGA-XF-AAN0-01 12 109613964 109613964 G A ACACB Missense_Mutation p.E445K 0.48 tolerated(0.65) benign(0.008) TCGA-XF-AAN0-01 12 110222220 110222220 G T TRPV4 Missense_Mutation p.H787N 0.51 tolerated(0.39) possibly_damaging(0.597) TCGA-XF-AAN0-01 12 113433189 113433189 C T OAS2 Silent p.V179V 0.56 TCGA-XF-AAN0-01 12 119943057 119943057 G C CCDC60 Missense_Mutation p.E278Q 0.05 deleterious(0.02) probably_damaging(0.986) TCGA-XF-AAN0-01 12 14840969 14840969 G T GUCY2C Missense_Mutation p.F82L 0.44 deleterious(0.01) benign(0.17) TCGA-XF-AAN0-01 12 19514624 19514624 G C PLEKHA5 Missense_Mutation p.E1198Q 0.42 tolerated(0.28) benign(0.004) TCGA-XF-AAN0-01 12 21668754 21668754 G C GOLT1B 3'UTR 0.78 TCGA-XF-AAN0-01 12 2742830 2742830 C A CACNA1C Missense_Mutation p.F1308L 0.35 deleterious(0.03) benign(0.019) TCGA-XF-AAN0-01 12 2742833 2742833 C T CACNA1C Silent p.L1309L 0.37 TCGA-XF-AAN0-01 12 31255426 31255426 G A DDX11 Missense_Mutation p.M779I 0.50 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN0-01 12 51450285 51450285 G T LETMD1 Silent p.S318S 0.38 TCGA-XF-AAN0-01 12 55759304 55759304 G C OR6C75 Missense_Mutation p.R137T 0.43 deleterious_low_confidence(0.01) benign(0.309) TCGA-XF-AAN0-01 12 7970583 7970583 G C SLC2A14 Silent p.V396V 0.50 TCGA-XF-AAN0-01 12 96266056 96266056 C T CCDC38 Missense_Mutation p.M487I 0.46 tolerated(1) benign(0.001) TCGA-XF-AAN0-01 13 103527837 103527837 G A ERCC5 Missense_Mutation p.D1049N 0.27 tolerated(0.09) possibly_damaging(0.649) TCGA-XF-AAN0-01 13 37583763 37583763 C G SUPT20H 3'UTR 0.35 TCGA-XF-AAN0-01 13 49039405 49039406 - A RB1 Frame_Shift_Ins p.R798Tfs*17 0.29 TCGA-XF-AAN0-01 13 52598503 52598503 C G ALG11 Missense_Mutation p.Q213E 0.31 deleterious(0.03) benign(0.003) TCGA-XF-AAN0-01 13 52598639 52598639 C T ALG11 Missense_Mutation p.S258F 0.37 deleterious(0) probably_damaging(0.996) TCGA-XF-AAN0-01 13 73343021 73343021 C T DIS3 Silent p.L595L 0.23 TCGA-XF-AAN0-01 13 84454331 84454331 G C SLITRK1 Missense_Mutation p.L438V 0.31 deleterious(0.02) probably_damaging(0.91) TCGA-XF-AAN0-01 13 86370332 86370332 C G SLITRK6 Missense_Mutation p.E104D 0.40 deleterious(0.03) benign(0.218) TCGA-XF-AAN0-01 13 96651533 96651533 G A UGGT2 Missense_Mutation p.S230F 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN0-01 13 99109439 99109439 G C STK24 Silent p.L426L 0.56 TCGA-XF-AAN0-01 14 102552205 102552205 G C HSP90AA1 Missense_Mutation p.S262C 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XF-AAN0-01 14 103969611 103969611 G A MARK3 3'UTR 0.42 TCGA-XF-AAN0-01 14 24912062 24912062 C T SDR39U1 5'Flank 0.56 TCGA-XF-AAN0-01 14 33684556 33684556 G T NPAS3 Missense_Mutation p.M103I 0.38 deleterious(0.02) benign(0.019) TCGA-XF-AAN0-01 14 38679281 38679281 C G SSTR1 Silent p.L229L 0.48 TCGA-XF-AAN0-01 14 50245145 50245145 G A KLHDC2 Missense_Mutation p.R189K 0.51 tolerated(0.93) probably_damaging(0.991) TCGA-XF-AAN0-01 14 64532290 64532290 G A SYNE2 Silent p.L3451L 0.42 TCGA-XF-AAN0-01 14 68260431 68260431 C G ZFYVE26 Missense_Mutation p.R816T 0.38 tolerated(0.13) benign(0.157) TCGA-XF-AAN0-01 14 68260950 68260950 C T ZFYVE26 Missense_Mutation p.R780Q 0.59 tolerated(0.07) benign(0.012) TCGA-XF-AAN0-01 14 69814713 69814713 C G GALNT16 Silent p.G511G 0.48 TCGA-XF-AAN0-01 15 101098935 101098935 G A RNU6-181P 3'Flank 0.29 TCGA-XF-AAN0-01 15 101550773 101550773 G C LRRK1 Missense_Mutation p.E370Q 0.37 tolerated(0.31) possibly_damaging(0.863) TCGA-XF-AAN0-01 15 25924984 25924984 C T ATP10A Missense_Mutation p.G1335E 0.25 tolerated(1) benign(0.001) TCGA-XF-AAN0-01 15 33359731 33359731 G C FMN1 Missense_Mutation p.Q119E 0.47 tolerated_low_confidence(0.37) unknown(0) TCGA-XF-AAN0-01 15 33928741 33928741 G C RYR3 Missense_Mutation p.E1182D 0.41 benign(0.024) TCGA-XF-AAN0-01 15 40265864 40265864 G A EIF2AK4 Missense_Mutation p.E578K 0.36 tolerated(0.15) benign(0.044) TCGA-XF-AAN0-01 15 41044248 41044248 G A RMDN3 Missense_Mutation p.R106W 0.35 deleterious(0) possibly_damaging(0.761) TCGA-XF-AAN0-01 15 41350848 41350848 C G INO80 Missense_Mutation p.K658N 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN0-01 15 42631964 42631964 C G GANC Silent p.T647T 0.42 TCGA-XF-AAN0-01 15 51250932 51250932 G T AP4E1 Nonsense_Mutation p.E598* 0.27 TCGA-XF-AAN0-01 15 58006904 58006904 G A POLR2M 3'UTR 0.29 TCGA-XF-AAN0-01 15 68583478 68583478 G A FEM1B Silent p.K594K 0.16 TCGA-XF-AAN0-01 15 78211177 78211177 C T RP11-114H24.7 Intron 0.24 TCGA-XF-AAN0-01 15 78640266 78640266 C G CRABP1 Intron 0.44 TCGA-XF-AAN0-01 15 79750515 79750515 G C KIAA1024 Missense_Mutation p.E676Q 0.38 tolerated(0.1) possibly_damaging(0.838) TCGA-XF-AAN0-01 15 83502061 83502061 C T WHAMM Missense_Mutation p.P735S 0.43 tolerated(0.27) probably_damaging(0.999) TCGA-XF-AAN0-01 15 85189506 85189506 G C WDR73 Missense_Mutation p.F142L 0.48 tolerated(0.63) benign(0.076) TCGA-XF-AAN0-01 15 89857925 89857925 C G FANCI Missense_Mutation p.S1268C 0.28 deleterious(0) probably_damaging(0.993) TCGA-XF-AAN0-01 15 91292680 91292680 G A BLM Missense_Mutation p.R61K 0.33 tolerated(0.77) benign(0.002) TCGA-XF-AAN0-01 16 19680619 19680619 C A C16orf62 Missense_Mutation p.P876T 0.50 deleterious(0) possibly_damaging(0.859) TCGA-XF-AAN0-01 16 20335566 20335566 G A GP2 Missense_Mutation p.P36L 0.26 tolerated(0.74) benign(0.006) TCGA-XF-AAN0-01 16 25189326 25189326 G A LCMT1 Silent p.L329L 0.17 TCGA-XF-AAN0-01 16 2581078 2581078 C A CEMP1 5'UTR 0.19 TCGA-XF-AAN0-01 16 2871483 2871483 C T PRSS21 Silent p.I274I 0.35 TCGA-XF-AAN0-01 16 28909389 28909389 C A ATP2A1 Silent p.V496V 0.44 TCGA-XF-AAN0-01 16 3119256 3119256 C T IL32 Missense_Mutation p.S156L 0.24 deleterious(0.02) benign(0.189) TCGA-XF-AAN0-01 16 31202724 31202724 G C FUS Missense_Mutation p.E516Q 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.727) TCGA-XF-AAN0-01 16 68835596 68835596 C T CDH1 Nonsense_Mutation p.R63* 0.61 TCGA-XF-AAN0-01 16 731990 731990 C A JMJD8 3'UTR 0.21 TCGA-XF-AAN0-01 16 74425572 74425572 C G NPIPB15 Missense_Mutation p.S309C 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-XF-AAN0-01 16 76569444 76569444 G A CNTNAP4 Missense_Mutation p.G847R 0.63 deleterious(0.01) probably_damaging(0.955) TCGA-XF-AAN0-01 16 844137 844137 C T CHTF18 Missense_Mutation p.S629L 0.21 deleterious(0) benign(0.221) TCGA-XF-AAN0-01 16 89349793 89349793 C G ANKRD11 Missense_Mutation p.D1053H 0.62 possibly_damaging(0.868) TCGA-XF-AAN0-01 16 89753143 89753143 G C CDK10 Missense_Mutation p.E9Q 0.67 tolerated(0.09) benign(0.325) TCGA-XF-AAN0-01 16 89755690 89755690 G C CDK10 Missense_Mutation p.E40Q 0.72 tolerated(0.25) possibly_damaging(0.517) TCGA-XF-AAN0-01 17 10416050 10416050 C T MYH1 Missense_Mutation p.G319E 0.36 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 17 17120429 17120429 T C FLCN Missense_Mutation p.K377R 0.16 tolerated(0.94) benign(0.001) TCGA-XF-AAN0-01 17 18082149 18082149 C A MYO15A Missense_Mutation p.L3520I 0.28 unknown(0) TCGA-XF-AAN0-01 17 29562679 29562679 C T NF1 Silent p.L1253L 0.20 TCGA-XF-AAN0-01 17 30349447 30349447 G C LRRC37B Missense_Mutation p.E428Q 0.27 tolerated(0.25) benign(0.246) TCGA-XF-AAN0-01 17 33690711 33690711 C T SLFN11 Missense_Mutation p.R39K 0.28 tolerated(0.35) benign(0.048) TCGA-XF-AAN0-01 17 35696785 35696785 G C ACACA Missense_Mutation p.Q22E 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-XF-AAN0-01 17 36486172 36486172 G C GPR179 Missense_Mutation p.L1094V 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-XF-AAN0-01 17 36714485 36714485 C A SRCIN1 Nonsense_Mutation p.E727* 0.20 TCGA-XF-AAN0-01 17 37235497 37235497 C T PLXDC1 Intron 0.28 TCGA-XF-AAN0-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.25 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN0-01 17 37873620 37873620 C A ERBB2 Missense_Mutation p.F595L 0.27 tolerated(0.43) benign(0) TCGA-XF-AAN0-01 17 38289346 38289346 G A MSL1 Missense_Mutation p.E251K 0.31 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN0-01 17 38420831 38420831 C T WIPF2 Nonsense_Mutation p.Q135* 0.14 TCGA-XF-AAN0-01 17 39645947 39645947 G C KRT36 Missense_Mutation p.S57C 0.23 tolerated(0.22) benign(0.004) TCGA-XF-AAN0-01 17 39646040 39646040 G C KRT36 Missense_Mutation p.S26C 0.26 deleterious(0.03) benign(0.003) TCGA-XF-AAN0-01 17 39680732 39680732 G C KRT19 Missense_Mutation p.P241A 0.18 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 17 39920968 39920968 C T JUP Silent p.K385K 0.07 TCGA-XF-AAN0-01 17 40456423 40456423 C G STAT5A Silent p.T411T 0.18 TCGA-XF-AAN0-01 17 40695180 40695180 G A NAGLU Missense_Mutation p.E386K 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN0-01 17 40696355 40696355 G A NAGLU 3'UTR 0.38 TCGA-XF-AAN0-01 17 41477462 41477462 G A ARL4D Missense_Mutation p.R121Q 0.53 tolerated(0.12) possibly_damaging(0.462) TCGA-XF-AAN0-01 17 43101865 43101865 G T DCAKD Missense_Mutation p.T211K 0.22 tolerated(0.29) benign(0.034) TCGA-XF-AAN0-01 17 43227609 43227609 G A HEXIM1 Missense_Mutation p.R351Q 0.20 deleterious(0.02) possibly_damaging(0.523) TCGA-XF-AAN0-01 17 45774149 45774149 G A TBKBP1 Missense_Mutation p.E100K 0.42 tolerated(0.63) benign(0.056) TCGA-XF-AAN0-01 17 46620397 46620397 C G HOXB2 3'UTR 0.43 TCGA-XF-AAN0-01 17 48193441 48193441 G T SAMD14 Missense_Mutation p.D171E 0.46 tolerated(0.08) probably_damaging(0.999) TCGA-XF-AAN0-01 17 55023818 55023818 G C COIL Missense_Mutation p.L515V 0.26 deleterious(0.03) possibly_damaging(0.848) TCGA-XF-AAN0-01 17 57057951 57057951 G A PPM1E Silent p.E609E 0.22 TCGA-XF-AAN0-01 17 61678658 61678658 G A TACO1 Silent p.P72P 0.33 TCGA-XF-AAN0-01 17 62050218 62050218 C T SCN4A 5'UTR 0.21 TCGA-XF-AAN0-01 17 67522844 67522844 C T MAP2K6 Missense_Mutation p.S292L 0.25 deleterious(0.04) benign(0.291) TCGA-XF-AAN0-01 17 7536220 7536220 C A SHBG Missense_Mutation p.P335T 0.55 tolerated(0.51) benign(0.05) TCGA-XF-AAN0-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.37 deleterious(0.01) possibly_damaging(0.876) TCGA-XF-AAN0-01 17 76113578 76113578 G C TMC6 Missense_Mutation p.F723L 0.33 tolerated(0.26) benign(0.146) TCGA-XF-AAN0-01 17 76167988 76167988 G A SYNGR2 Missense_Mutation p.E216K 0.29 tolerated(0.68) benign(0.25) TCGA-XF-AAN0-01 17 76464812 76464812 C T DNAH17 Missense_Mutation p.E2875K 0.24 possibly_damaging(0.569) TCGA-XF-AAN0-01 17 78354694 78354694 G A RNF213 Silent p.V4568V 0.26 TCGA-XF-AAN0-01 17 79176112 79176112 G C AZI1 Nonsense_Mutation p.S239* 0.21 TCGA-XF-AAN0-01 17 79663897 79663897 C T HGS Missense_Mutation p.S584L 0.32 tolerated(0.09) probably_damaging(0.921) TCGA-XF-AAN0-01 17 80789145 80789145 C A ZNF750 Nonsense_Mutation p.E396* 0.20 TCGA-XF-AAN0-01 17 80789280 80789280 C T ZNF750 Missense_Mutation p.E351K 0.27 deleterious(0.01) possibly_damaging(0.725) TCGA-XF-AAN0-01 17 8140762 8140762 C T CTC1 Silent p.Q241Q 0.61 TCGA-XF-AAN0-01 17 8526429 8526429 C G MYH10 Missense_Mutation p.E46Q 0.53 probably_damaging(0.996) TCGA-XF-AAN0-01 18 13040953 13040953 C T CEP192 Missense_Mutation p.S645L 0.33 deleterious(0.01) possibly_damaging(0.57) TCGA-XF-AAN0-01 18 13612736 13612736 G A LDLRAD4 Intron 0.30 TCGA-XF-AAN0-01 18 14478148 14478148 G A CXADRP3 RNA 0.29 TCGA-XF-AAN0-01 18 19154593 19154593 G C ESCO1 Nonsense_Mutation p.S71* 0.25 TCGA-XF-AAN0-01 18 21419864 21419864 C T LAMA3 Missense_Mutation p.L1103F 0.35 benign(0.001) TCGA-XF-AAN0-01 18 21427517 21427517 G C LAMA3 Missense_Mutation p.E1341Q 0.49 benign(0.034) TCGA-XF-AAN0-01 18 22932017 22932017 G A ZNF521 5'UTR 0.43 TCGA-XF-AAN0-01 18 33831208 33831208 C G MOCOS Nonsense_Mutation p.S709* 0.30 TCGA-XF-AAN0-01 18 59894858 59894858 G T KIAA1468 Missense_Mutation p.D364Y 0.30 tolerated(0.36) benign(0.407) TCGA-XF-AAN0-01 18 61151687 61151687 C T SERPINB5 Missense_Mutation p.S9L 0.34 deleterious(0) possibly_damaging(0.742) TCGA-XF-AAN0-01 18 61570224 61570224 G T SERPINB2 Missense_Mutation p.Q311H 0.30 deleterious(0) possibly_damaging(0.764) TCGA-XF-AAN0-01 18 61653592 61653592 T G SERPINB8 Intron 0.13 TCGA-XF-AAN0-01 18 7231445 7231445 G A LRRC30 Silent p.G103G 0.27 TCGA-XF-AAN0-01 18 9257871 9257871 G T ANKRD12 Missense_Mutation p.D1536Y 0.33 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-XF-AAN0-01 19 10267137 10267137 G A DNMT1 Silent p.I443I 0.20 TCGA-XF-AAN0-01 19 1233483 1233483 G A C19orf26 Silent p.F307F 0.42 TCGA-XF-AAN0-01 19 14952273 14952273 T - OR7A10 Frame_Shift_Del p.Q139Hfs*13 0.32 TCGA-XF-AAN0-01 19 16060073 16060073 C A OR10H4 Missense_Mutation p.L86M 0.03 tolerated(0.09) benign(0.267) TCGA-XF-AAN0-01 19 16925938 16925938 G A NWD1 3'UTR 0.40 TCGA-XF-AAN0-01 19 17476163 17476163 C G PLVAP Missense_Mutation p.E371Q 0.55 tolerated(0.4) benign(0.348) TCGA-XF-AAN0-01 19 17954670 17954670 G A JAK3 Missense_Mutation p.T75M 0.09 tolerated(0.09) possibly_damaging(0.459) TCGA-XF-AAN0-01 19 17988875 17988875 C T SLC5A5 Silent p.L314L 0.36 TCGA-XF-AAN0-01 19 19675894 19675894 G C PBX4 Missense_Mutation p.S258C 0.36 deleterious(0.01) possibly_damaging(0.568) TCGA-XF-AAN0-01 19 19905934 19905934 C G ZNF506 Missense_Mutation p.E254D 0.35 deleterious(0.03) possibly_damaging(0.532) TCGA-XF-AAN0-01 19 2243439 2243439 G - SF3A2 Frame_Shift_Del p.G9Afs*39 0.11 TCGA-XF-AAN0-01 19 22940642 22940642 G C ZNF99 Nonsense_Mutation p.S690* 0.37 TCGA-XF-AAN0-01 19 33370150 33370150 A C CEP89 Missense_Mutation p.L757R 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-XF-AAN0-01 19 35632085 35632085 C T FXYD1 Silent p.F48F 0.42 TCGA-XF-AAN0-01 19 37880588 37880588 G A ZNF527 Missense_Mutation p.R546K 0.16 tolerated(0.1) probably_damaging(0.996) TCGA-XF-AAN0-01 19 39694638 39694638 C T SYCN Missense_Mutation p.C86Y 0.15 deleterious(0) probably_damaging(0.986) TCGA-XF-AAN0-01 19 39734538 39734538 G A IFNL3 Nonsense_Mutation p.Q140* 0.31 TCGA-XF-AAN0-01 19 41135362 41135362 C A LTBP4 Silent p.L1593L 0.40 TCGA-XF-AAN0-01 19 41349849 41349849 C T CYP2A6 Missense_Mutation p.R446K 0.15 benign(0.044) TCGA-XF-AAN0-01 19 41381746 41381746 C T CYP2A7 Missense_Mutation p.R446K 0.12 tolerated(0.05) benign(0.183) TCGA-XF-AAN0-01 19 42462973 42462973 C G RABAC1 Missense_Mutation p.E62Q 0.30 tolerated(0.21) probably_damaging(0.961) TCGA-XF-AAN0-01 19 4345913 4345913 G A MPND Missense_Mutation p.D156N 0.33 deleterious(0) possibly_damaging(0.821) TCGA-XF-AAN0-01 19 4361642 4361642 G A SH3GL1 Silent p.F354F 0.53 TCGA-XF-AAN0-01 19 4365533 4365533 G A SH3GL1 Silent p.L93L 0.38 TCGA-XF-AAN0-01 19 43968550 43968550 C T LYPD3 Silent p.P46P 0.08 TCGA-XF-AAN0-01 19 45381892 45381892 G A PVRL2 Intron 0.35 TCGA-XF-AAN0-01 19 45858981 45858981 G A ERCC2 Silent p.I495I 0.27 TCGA-XF-AAN0-01 19 45899616 45899616 G A PPP1R13L Missense_Mutation p.S264L 0.07 tolerated(0.08) benign(0.041) TCGA-XF-AAN0-01 19 47193890 47193890 C G PRKD2 Missense_Mutation p.E592D 0.40 deleterious(0.02) benign(0.322) TCGA-XF-AAN0-01 19 48377989 48377989 T C SULT2A1 Missense_Mutation p.K224E 0.39 deleterious(0.01) benign(0.346) TCGA-XF-AAN0-01 19 49224145 49224145 G A RASIP1 Silent p.L934L 0.25 TCGA-XF-AAN0-01 19 49468864 49468864 C G FTL Missense_Mutation p.L34V 0.40 deleterious(0.03) possibly_damaging(0.785) TCGA-XF-AAN0-01 19 50657899 50657899 G A IZUMO2 Missense_Mutation p.S194F 0.34 deleterious(0.03) possibly_damaging(0.683) TCGA-XF-AAN0-01 19 53472452 53472452 C G ZNF702P RNA 0.44 TCGA-XF-AAN0-01 19 53854409 53854409 G A ZNF845 Missense_Mutation p.G161S 0.36 tolerated(0.4) benign(0.404) TCGA-XF-AAN0-01 19 55757021 55757021 G A PPP6R1 Silent p.L85L 0.45 TCGA-XF-AAN0-01 19 56244813 56244813 C T NLRP9 Missense_Mutation p.M128I 0.34 tolerated(1) benign(0.002) TCGA-XF-AAN0-01 19 5692001 5692001 G A LONP1 3'UTR 0.47 TCGA-XF-AAN0-01 19 57641745 57641745 G A USP29 Missense_Mutation p.E568K 0.41 tolerated(1) probably_damaging(0.946) TCGA-XF-AAN0-01 19 5783431 5783431 C A PRR22 Missense_Mutation p.R276I 0.28 deleterious(0) possibly_damaging(0.568) TCGA-XF-AAN0-01 19 57867776 57867776 C G ZNF304 Missense_Mutation p.S180C 0.34 tolerated(0.18) possibly_damaging(0.784) TCGA-XF-AAN0-01 19 59081738 59081738 C G MZF1 Missense_Mutation p.E185Q 0.26 tolerated(0.17) probably_damaging(0.979) TCGA-XF-AAN0-01 19 7828306 7828306 G C CLEC4M Missense_Mutation p.R25T 0.34 tolerated(0.05) possibly_damaging(0.769) TCGA-XF-AAN0-01 19 8808762 8808762 A G ACTL9 Missense_Mutation p.F97S 0.29 deleterious(0) possibly_damaging(0.864) TCGA-XF-AAN0-01 19 989795 989795 C G WDR18 Missense_Mutation p.R119G 0.39 deleterious(0.01) probably_damaging(0.93) TCGA-XF-AAN0-01 1 110559289 110559289 C T AHCYL1 Silent p.G300G 0.28 TCGA-XF-AAN0-01 1 113638568 113638568 C G LRIG2 Silent p.L292L 0.40 TCGA-XF-AAN0-01 1 114391172 114391172 G C PTPN22 Missense_Mutation p.S302C 0.35 deleterious(0.01) possibly_damaging(0.611) TCGA-XF-AAN0-01 1 1412673 1412673 G A ATAD3B Silent p.L75L 0.29 TCGA-XF-AAN0-01 1 150935594 150935594 G C SETDB1 Missense_Mutation p.E1146Q 0.17 deleterious(0.03) benign(0.419) TCGA-XF-AAN0-01 1 152278727 152278727 C G FLG Missense_Mutation p.E2879Q 0.21 benign(0.002) TCGA-XF-AAN0-01 1 153317830 153317830 G C PGLYRP4 Silent p.V56V 0.18 TCGA-XF-AAN0-01 1 15386730 15386730 G A KAZN Missense_Mutation p.E327K 0.16 tolerated(0.11) benign(0.166) TCGA-XF-AAN0-01 1 154561914 154561914 G A ADAR Missense_Mutation p.S898F 0.28 deleterious(0) possibly_damaging(0.767) TCGA-XF-AAN0-01 1 155142003 155142003 G A RP11-201K10.3 Missense_Mutation p.S212L 0.10 unknown(0) TCGA-XF-AAN0-01 1 155224479 155224479 T C FAM189B Missense_Mutation p.I64V 0.39 tolerated(1) benign(0.006) TCGA-XF-AAN0-01 1 155224483 155224483 C G FAM189B Missense_Mutation p.E62D 0.39 tolerated(0.41) probably_damaging(0.994) TCGA-XF-AAN0-01 1 155912157 155912157 C T RXFP4 Silent p.V219V 0.29 TCGA-XF-AAN0-01 1 1559306 1559306 G A MIB2 Missense_Mutation p.E249K 0.25 tolerated(0.12) probably_damaging(0.922) TCGA-XF-AAN0-01 1 158368944 158368944 A G OR10T2 Missense_Mutation p.F105L 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-XF-AAN0-01 1 159504977 159504977 G A OR10J5 Missense_Mutation p.S274L 0.25 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 1 160012173 160012173 G C KCNJ10 Silent p.L50L 0.25 TCGA-XF-AAN0-01 1 161059140 161059140 G A PVRL4 5'UTR 0.22 TCGA-XF-AAN0-01 1 162774060 162774060 C T HSD17B7 Missense_Mutation p.R251C 0.17 deleterious(0) probably_damaging(0.97) TCGA-XF-AAN0-01 1 175956094 175956094 C T RFWD2 Silent p.R706R 0.22 TCGA-XF-AAN0-01 1 184446603 184446603 G A C1orf21 5'UTR 0.31 TCGA-XF-AAN0-01 1 186281800 186281800 C G TPR 3'UTR 0.31 TCGA-XF-AAN0-01 1 19481501 19481501 G T UBR4 Missense_Mutation p.F2123L 0.21 benign(0.384) TCGA-XF-AAN0-01 1 200801405 200801405 G C CAMSAP2 Silent p.G241G 0.32 TCGA-XF-AAN0-01 1 200801844 200801844 G C CAMSAP2 Missense_Mutation p.L266F 0.23 deleterious(0.02) benign(0.386) TCGA-XF-AAN0-01 1 20107215 20107215 G C TMCO4 Missense_Mutation p.Q13E 0.30 tolerated_low_confidence(0.33) benign(0.029) TCGA-XF-AAN0-01 1 201687851 201687851 G C NAV1 Missense_Mutation p.K398N 0.26 deleterious(0) possibly_damaging(0.503) TCGA-XF-AAN0-01 1 208213028 208213028 C T PLXNA2 Missense_Mutation p.E1480K 0.22 deleterious(0.02) probably_damaging(0.983) TCGA-XF-AAN0-01 1 211256200 211256200 G T KCNH1 Missense_Mutation p.S160R 0.37 tolerated(0.86) benign(0.004) TCGA-XF-AAN0-01 1 214178607 214178607 G C PROX1 Missense_Mutation p.D609H 0.20 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN0-01 1 223943244 223943244 G A CAPN2 Missense_Mutation p.D400N 0.31 tolerated(0.06) benign(0.008) TCGA-XF-AAN0-01 1 227079026 227079026 C G PSEN2 Missense_Mutation p.Q312E 0.21 tolerated(0.76) benign(0.004) TCGA-XF-AAN0-01 1 228404956 228404956 G A OBSCN Missense_Mutation p.E874K 0.29 probably_damaging(0.956) TCGA-XF-AAN0-01 1 229675264 229675264 C T ABCB10 Missense_Mutation p.M426I 0.25 tolerated(0.69) benign(0.023) TCGA-XF-AAN0-01 1 231471482 231471482 C G EXOC8 Missense_Mutation p.K670N 0.22 deleterious(0.02) possibly_damaging(0.858) TCGA-XF-AAN0-01 1 231471504 231471504 C G EXOC8 Missense_Mutation p.R663P 0.22 tolerated(0.1) possibly_damaging(0.814) TCGA-XF-AAN0-01 1 234553925 234553925 G C TARBP1 Missense_Mutation p.Q1204E 0.20 deleterious(0) probably_damaging(0.993) TCGA-XF-AAN0-01 1 234553935 234553935 G A TARBP1 Silent p.F1200F 0.20 TCGA-XF-AAN0-01 1 248367166 248367166 G A OR2M3 Missense_Mutation p.R266H 0.24 tolerated(0.95) benign(0.012) TCGA-XF-AAN0-01 1 248512656 248512656 G A OR14C36 Missense_Mutation p.E194K 0.28 tolerated(0.25) benign(0.05) TCGA-XF-AAN0-01 1 27106601 27106601 T C ARID1A Missense_Mutation p.L2071S 0.31 probably_damaging(0.999) TCGA-XF-AAN0-01 1 29069045 29069045 C T YTHDF2 Missense_Mutation p.S88F 0.28 deleterious(0.02) possibly_damaging(0.805) TCGA-XF-AAN0-01 1 31907022 31907022 C G SERINC2 Silent p.L457L 0.31 TCGA-XF-AAN0-01 1 32256606 32256606 G C SPOCD1 Missense_Mutation p.I1083M 0.41 deleterious(0.03) benign(0.13) TCGA-XF-AAN0-01 1 32257928 32257928 G T SPOCD1 Silent p.L950L 0.29 TCGA-XF-AAN0-01 1 32257940 32257940 G A SPOCD1 Silent p.L946L 0.38 TCGA-XF-AAN0-01 1 34090668 34090668 G C CSMD2 Nonsense_Mutation p.S1788* 0.24 TCGA-XF-AAN0-01 1 35476481 35476481 C T ZMYM6 Missense_Mutation p.A407T 0.37 tolerated(0.16) benign(0.006) TCGA-XF-AAN0-01 1 35900617 35900617 C T KIAA0319L Missense_Mutation p.D1010N 0.34 deleterious(0) probably_damaging(0.913) TCGA-XF-AAN0-01 1 39951250 39951250 G C MACF1 Silent p.G5359G 0.21 TCGA-XF-AAN0-01 1 43896275 43896275 C T SZT2 Missense_Mutation p.S1473L 0.20 tolerated(0.14) probably_damaging(0.99) TCGA-XF-AAN0-01 1 43898247 43898247 C T SZT2 Silent p.L1777L 0.28 TCGA-XF-AAN0-01 1 45980611 45980611 G C PRDX1 Nonsense_Mutation p.S106* 0.39 TCGA-XF-AAN0-01 1 45981460 45981460 G C PRDX1 Missense_Mutation p.F42L 0.40 tolerated(0.09) benign(0.081) TCGA-XF-AAN0-01 1 46472003 46472003 G A MAST2 Missense_Mutation p.E280K 0.33 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-XF-AAN0-01 1 47152536 47152536 C G EFCAB14 Missense_Mutation p.D332H 0.40 tolerated(0.23) benign(0.022) TCGA-XF-AAN0-01 1 51926777 51926777 C G EPS15 Missense_Mutation p.D183H 0.30 deleterious(0) possibly_damaging(0.492) TCGA-XF-AAN0-01 1 54665914 54665914 G A MRPL37 5'UTR 0.06 TCGA-XF-AAN0-01 1 67890811 67890811 G C SERBP1 Missense_Mutation p.S187C 0.31 deleterious(0.03) possibly_damaging(0.678) TCGA-XF-AAN0-01 1 78430643 78430643 C G FUBP1 Missense_Mutation p.G216A 0.05 deleterious(0.02) probably_damaging(1) TCGA-XF-AAN0-01 1 84610102 84610102 C T PRKACB Nonsense_Mutation p.Q20* 0.30 TCGA-XF-AAN0-01 1 89735205 89735205 A T GBP5 Missense_Mutation p.C12S 0.10 deleterious(0.02) possibly_damaging(0.565) TCGA-XF-AAN0-01 1 92709888 92709888 C T C1orf146 Missense_Mutation p.S92F 0.38 tolerated(0.72) benign(0.006) TCGA-XF-AAN0-01 1 92712659 92712659 C T GLMN Missense_Mutation p.G543E 0.30 tolerated(0.27) benign(0.261) TCGA-XF-AAN0-01 1 92712694 92712694 C T GLMN Silent p.Q531Q 0.31 TCGA-XF-AAN0-01 20 1161990 1161990 G C TMEM74B Silent p.V91V 0.30 TCGA-XF-AAN0-01 20 14474136 14474136 C G MACROD2 Missense_Mutation p.L95V 0.32 deleterious(0) possibly_damaging(0.908) TCGA-XF-AAN0-01 20 21687002 21687002 C T PAX1 Intron 0.19 TCGA-XF-AAN0-01 20 21687182 21687182 C T PAX1 Silent p.I131I 0.24 TCGA-XF-AAN0-01 20 30522590 30522590 C G TTLL9 Missense_Mutation p.I301M 0.30 tolerated(0.19) possibly_damaging(0.812) TCGA-XF-AAN0-01 20 34568444 34568444 G C CNBD2 Missense_Mutation p.E103Q 0.29 deleterious(0) probably_damaging(0.98) TCGA-XF-AAN0-01 20 35724326 35724326 G C RBL1 Missense_Mutation p.F2L 0.55 tolerated_low_confidence(0.42) benign(0.001) TCGA-XF-AAN0-01 20 37353593 37353593 G A SLC32A1 Missense_Mutation p.E76K 0.40 tolerated(0.7) benign(0.003) TCGA-XF-AAN0-01 20 4202319 4202319 C T ADRA1D Missense_Mutation p.G524R 0.31 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-XF-AAN0-01 20 44515156 44515156 C G SPATA25 Nonstop_Mutation p.*228Yext*9 0.34 TCGA-XF-AAN0-01 20 47770530 47770530 G C STAU1 Missense_Mutation p.P95R 0.35 tolerated(0.09) probably_damaging(0.974) TCGA-XF-AAN0-01 20 52779303 52779303 C G CYP24A1 Missense_Mutation p.E315Q 0.36 tolerated(0.07) possibly_damaging(0.731) TCGA-XF-AAN0-01 20 58442763 58442763 C G SYCP2 Intron 0.21 TCGA-XF-AAN0-01 20 61835099 61835099 C T YTHDF1 Missense_Mutation p.G65R 0.34 deleterious(0.01) probably_damaging(0.913) TCGA-XF-AAN0-01 20 9317845 9317845 G A PLCB4 Missense_Mutation p.E53K 0.45 deleterious(0.01) benign(0.226) TCGA-XF-AAN0-01 21 35757905 35757905 G A SMIM11 Missense_Mutation p.E48K 0.16 tolerated(0.1) benign(0.109) TCGA-XF-AAN0-01 21 42824620 42824620 G T MX1 Nonsense_Mutation p.E528* 0.24 TCGA-XF-AAN0-01 21 44323667 44323667 G C NDUFV3 Missense_Mutation p.R182T 0.30 tolerated(0.06) benign(0.019) TCGA-XF-AAN0-01 21 47754634 47754634 C G PCNT Missense_Mutation p.I197M 0.31 benign(0.001) TCGA-XF-AAN0-01 22 19396014 19396014 T C HIRA Missense_Mutation p.N68S 0.25 deleterious(0.02) probably_damaging(0.97) TCGA-XF-AAN0-01 22 21153552 21153552 C G PI4KA Missense_Mutation p.L611F 0.46 deleterious(0.03) possibly_damaging(0.728) TCGA-XF-AAN0-01 22 21159441 21159441 G C PI4KA Missense_Mutation p.S394C 0.14 deleterious(0.05) possibly_damaging(0.469) TCGA-XF-AAN0-01 22 21354379 21354379 C G THAP7 Missense_Mutation p.W240C 0.38 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN0-01 22 24180580 24180580 C T DERL3 Missense_Mutation p.D96N 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-XF-AAN0-01 22 29193079 29193079 C G XBP1 Missense_Mutation p.E147Q 0.10 tolerated(0.13) probably_damaging(0.986) TCGA-XF-AAN0-01 22 29193133 29193133 C G XBP1 Missense_Mutation p.E129Q 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-XF-AAN0-01 22 36688106 36688106 C T MYH9 Missense_Mutation p.D1424N 0.40 probably_damaging(1) TCGA-XF-AAN0-01 22 38352811 38352811 G C POLR2F Missense_Mutation p.E18Q 0.26 tolerated(0.46) unknown(0) TCGA-XF-AAN0-01 22 38698874 38698874 C T CSNK1E Missense_Mutation p.D110N 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-XF-AAN0-01 22 39067143 39067143 G C CBY1 Missense_Mutation p.E85Q 0.40 tolerated(0.1) probably_damaging(0.973) TCGA-XF-AAN0-01 22 40820349 40820349 G C MKL1 Missense_Mutation p.S113C 0.43 deleterious(0.02) probably_damaging(0.987) TCGA-XF-AAN0-01 22 45132764 45132764 G A PRR5 Silent p.A291A 0.45 TCGA-XF-AAN0-01 2 110962573 110962573 C G NPHP1 5'UTR 0.50 TCGA-XF-AAN0-01 2 121991733 121991733 C G TFCP2L1 Missense_Mutation p.E378Q 0.36 tolerated(0.08) benign(0.287) TCGA-XF-AAN0-01 2 128338348 128338348 C G MYO7B Nonsense_Mutation p.S344* 0.67 TCGA-XF-AAN0-01 2 128628390 128628390 C T AMMECR1L Missense_Mutation p.E211K 0.43 tolerated(0.13) possibly_damaging(0.665) TCGA-XF-AAN0-01 2 160084400 160084400 G A TANC1 Missense_Mutation p.G1325E 0.37 deleterious(0) probably_damaging(0.99) TCGA-XF-AAN0-01 2 163003994 163003994 G A GCG Silent p.L41L 0.27 TCGA-XF-AAN0-01 2 174820676 174820676 G A SP3 Silent p.F188F 0.33 TCGA-XF-AAN0-01 2 178417035 178417035 C G TTC30B Missense_Mutation p.E153Q 0.28 deleterious(0.03) benign(0.015) TCGA-XF-AAN0-01 2 179397025 179397025 A G TTN Silent p.L34773L 0.27 TCGA-XF-AAN0-01 2 179612966 179612966 G C TTN Intron 0.27 TCGA-XF-AAN0-01 2 182392022 182392022 A T ITGA4 Splice_Site p.X780_splice 0.21 TCGA-XF-AAN0-01 2 191843582 191843582 C T STAT1 Missense_Mutation p.E625K 0.16 tolerated(0.61) benign(0.026) TCGA-XF-AAN0-01 2 196718121 196718121 G A DNAH7 Silent p.L2909L 0.23 TCGA-XF-AAN0-01 2 200820957 200820957 G C C2orf47 Missense_Mutation p.E146Q 0.32 tolerated(0.07) possibly_damaging(0.746) TCGA-XF-AAN0-01 2 203682163 203682163 G A ICA1L Missense_Mutation p.S221F 0.39 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 2 204000680 204000680 C T NBEAL1 Missense_Mutation p.S1336F 0.11 tolerated(0.09) benign(0.005) TCGA-XF-AAN0-01 2 20403859 20403859 G A SDC1 Silent p.L114L 0.44 TCGA-XF-AAN0-01 2 21229316 21229316 C G APOB Missense_Mutation p.G3475A 0.33 probably_damaging(0.999) TCGA-XF-AAN0-01 2 235943562 235943562 G A SH3BP4 5'UTR 0.56 TCGA-XF-AAN0-01 2 239161853 239161853 G C PER2 Silent p.L937L 0.18 TCGA-XF-AAN0-01 2 27597027 27597027 G T SNX17 Missense_Mutation p.D170Y 0.32 deleterious(0.01) possibly_damaging(0.79) TCGA-XF-AAN0-01 2 27597295 27597295 G T SNX17 Missense_Mutation p.R202S 0.28 deleterious(0) probably_damaging(0.992) TCGA-XF-AAN0-01 2 27597937 27597937 G C SNX17 Missense_Mutation p.D231H 0.29 deleterious(0) probably_damaging(0.996) TCGA-XF-AAN0-01 2 27598378 27598378 G C SNX17 Silent p.L260L 0.28 TCGA-XF-AAN0-01 2 27599570 27599570 G A SNX17 Missense_Mutation p.G466E 0.30 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN0-01 2 30863230 30863230 G C LCLAT1 Missense_Mutation p.Q330H 0.26 tolerated(0.09) benign(0.002) TCGA-XF-AAN0-01 2 32891699 32891699 C T TTC27 Intron 0.25 TCGA-XF-AAN0-01 2 47705408 47705408 C G MSH2 Intron 0.17 TCGA-XF-AAN0-01 2 55253542 55253542 C A RTN4 Nonsense_Mutation p.E565* 0.35 TCGA-XF-AAN0-01 2 55254247 55254247 C T RTN4 Missense_Mutation p.E330K 0.23 tolerated(0.14) benign(0.009) TCGA-XF-AAN0-01 2 55471167 55471167 C G MTIF2 Missense_Mutation p.E437Q 0.36 deleterious(0.01) possibly_damaging(0.721) TCGA-XF-AAN0-01 2 85553914 85553914 G C TGOLN2 Missense_Mutation p.S314C 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-XF-AAN0-01 2 86371723 86371723 C A IMMT Missense_Mutation p.D649Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN0-01 2 89278131 89278131 G A IGKV3-7 Silent p.L68L 0.31 TCGA-XF-AAN0-01 2 8943130 8943130 G C KIDINS220 Nonsense_Mutation p.S244* 0.36 TCGA-XF-AAN0-01 2 89459279 89459279 C T IGKV6-21 Missense_Mutation p.E100K 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-XF-AAN0-01 2 99811311 99811311 G C MRPL30 Missense_Mutation p.R77T 0.23 tolerated(0.09) benign(0.371) TCGA-XF-AAN0-01 3 118942991 118942991 G T B4GALT4 Missense_Mutation p.D196E 0.14 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 3 119535948 119535948 C T NR1I2 Silent p.T437T 0.29 TCGA-XF-AAN0-01 3 119536047 119536047 C G NR1I2 Missense_Mutation p.I470M 0.35 deleterious_low_confidence(0.02) benign(0.012) TCGA-XF-AAN0-01 3 122283309 122283309 C T DTX3L Silent p.L12L 0.50 TCGA-XF-AAN0-01 3 122354831 122354831 C G PARP15 Missense_Mutation p.H641D 0.23 tolerated(0.66) benign(0) TCGA-XF-AAN0-01 3 126916150 126916150 C T C3orf56 Missense_Mutation p.R208C 0.19 tolerated(0.23) possibly_damaging(0.835) TCGA-XF-AAN0-01 3 130292879 130292879 G A COL6A6 Missense_Mutation p.M1019I 0.19 tolerated(0.05) benign(0.238) TCGA-XF-AAN0-01 3 139195287 139195287 C G RBP2 Missense_Mutation p.Q5H 0.21 deleterious(0.04) benign(0.199) TCGA-XF-AAN0-01 3 142103421 142103421 G A XRN1 Silent p.L816L 0.36 TCGA-XF-AAN0-01 3 150916712 150916712 G A GPR171 Silent p.I154I 0.32 TCGA-XF-AAN0-01 3 154864995 154864995 G A MME Silent p.L493L 0.39 TCGA-XF-AAN0-01 3 155655450 155655450 C G GMPS Nonsense_Mutation p.S684* 0.20 TCGA-XF-AAN0-01 3 15621527 15621527 C G HACL1 Missense_Mutation p.E231D 0.40 tolerated(0.55) benign(0.005) TCGA-XF-AAN0-01 3 160119704 160119704 G A SMC4 Silent p.E47E 0.26 TCGA-XF-AAN0-01 3 16358385 16358385 C T RFTN1 Missense_Mutation p.D563N 0.31 tolerated_low_confidence(0.4) benign(0.001) TCGA-XF-AAN0-01 3 17416003 17416003 G T TBC1D5 Missense_Mutation p.A261D 0.21 deleterious(0) probably_damaging(0.992) TCGA-XF-AAN0-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.48 deleterious(0.02) probably_damaging(0.959) TCGA-XF-AAN0-01 3 185797613 185797613 C A ETV5 Nonsense_Mutation p.E215* 0.34 TCGA-XF-AAN0-01 3 186262147 186262147 G A CRYGS Intron 0.27 TCGA-XF-AAN0-01 3 20167510 20167510 G C KAT2B Missense_Mutation p.K509N 0.36 deleterious(0) benign(0.166) TCGA-XF-AAN0-01 3 31656625 31656625 A T STT3B Missense_Mutation p.L302F 0.37 deleterious(0.01) probably_damaging(0.952) TCGA-XF-AAN0-01 3 32995352 32995352 G C CCR4 Missense_Mutation p.L146F 0.32 deleterious(0) possibly_damaging(0.907) TCGA-XF-AAN0-01 3 37337616 37337616 G A GOLGA4 Missense_Mutation p.M262I 0.13 benign(0.094) TCGA-XF-AAN0-01 3 40231943 40231943 G A MYRIP Missense_Mutation p.D552N 0.25 tolerated(0.36) benign(0.006) TCGA-XF-AAN0-01 3 44938243 44938243 G A TGM4 Missense_Mutation p.E198K 0.40 tolerated(1) benign(0.006) TCGA-XF-AAN0-01 3 47049787 47049787 C T NBEAL2 Silent p.I2578I 0.25 TCGA-XF-AAN0-01 3 47455332 47455332 G A SCAP 3'UTR 0.27 TCGA-XF-AAN0-01 3 49052720 49052720 G C WDR6 Nonstop_Mutation p.*1152Sext*86 0.27 TCGA-XF-AAN0-01 3 49052817 49052817 G T WDR6 3'UTR 0.36 TCGA-XF-AAN0-01 3 49052860 49052860 G T WDR6 3'UTR 0.22 TCGA-XF-AAN0-01 3 49052981 49052981 G A DALRD3 3'UTR 0.24 TCGA-XF-AAN0-01 3 49053092 49053092 G A DALRD3 Silent p.L521L 0.31 TCGA-XF-AAN0-01 3 49053134 49053134 G C DALRD3 Missense_Mutation p.R507G 0.38 deleterious(0.02) possibly_damaging(0.719) TCGA-XF-AAN0-01 3 49053480 49053480 G C DALRD3 Missense_Mutation p.P457A 0.39 tolerated(0.12) possibly_damaging(0.472) TCGA-XF-AAN0-01 3 49053607 49053607 G A DALRD3 Missense_Mutation p.S438L 0.37 tolerated(0.06) possibly_damaging(0.893) TCGA-XF-AAN0-01 3 49053629 49053629 G T DALRD3 Missense_Mutation p.P431T 0.36 deleterious(0.05) benign(0.41) TCGA-XF-AAN0-01 3 49723041 49723041 G A MST1 Silent p.L459L 0.18 TCGA-XF-AAN0-01 3 49866528 49866528 C G TRAIP 3'UTR 0.31 TCGA-XF-AAN0-01 3 52361990 52361990 G A DNAH1 Silent p.P277P 0.07 TCGA-XF-AAN0-01 3 52432948 52432948 C T DNAH1 Nonsense_Mutation p.Q4058* 0.45 TCGA-XF-AAN0-01 3 55733513 55733513 C T ERC2 Missense_Mutation p.D914N 0.05 deleterious(0) probably_damaging(0.98) TCGA-XF-AAN0-01 3 58191220 58191220 C G DNASE1L3 Missense_Mutation p.E100Q 0.32 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 3 58191249 58191249 C T DNASE1L3 Missense_Mutation p.S90N 0.36 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 3 62306162 62306162 G A C3orf14 Missense_Mutation p.A6T 0.28 tolerated(0.59) benign(0.002) TCGA-XF-AAN0-01 3 64554096 64554096 C T ADAMTS9 Missense_Mutation p.R1491K 0.33 tolerated(1) benign(0.029) TCGA-XF-AAN0-01 3 97596489 97596489 G A CRYBG3 Missense_Mutation p.E203K 0.11 tolerated(0.06) benign(0.075) TCGA-XF-AAN0-01 3 97983342 97983342 C T OR5H6 Missense_Mutation p.H72Y 0.33 deleterious(0) probably_damaging(0.982) TCGA-XF-AAN0-01 4 1018975 1018975 C T FGFRL1 Missense_Mutation p.S452F 0.36 tolerated(0.05) benign(0.326) TCGA-XF-AAN0-01 4 120180985 120180985 G A USP53 Missense_Mutation p.E194K 0.33 tolerated(0.17) benign(0.299) TCGA-XF-AAN0-01 4 122766698 122766698 G C BBS7 Missense_Mutation p.I397M 0.55 tolerated(0.07) benign(0.329) TCGA-XF-AAN0-01 4 13615139 13615139 C A BOD1L1 Missense_Mutation p.D441Y 0.52 probably_damaging(0.982) TCGA-XF-AAN0-01 4 2200296 2200296 G A POLN Missense_Mutation p.S288F 0.51 deleterious(0.02) benign(0.021) TCGA-XF-AAN0-01 4 5500809 5500809 G C STK32B Nonstop_Mutation p.*415Sext*80 0.64 TCGA-XF-AAN0-01 4 56225604 56225604 C G SRD5A3 Missense_Mutation p.P105A 0.58 deleterious(0.01) probably_damaging(0.985) TCGA-XF-AAN0-01 4 6863088 6863088 G T KIAA0232 Missense_Mutation p.G327W 0.48 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 4 6865654 6865654 C G KIAA0232 Missense_Mutation p.S1182C 0.43 deleterious(0.04) benign(0.046) TCGA-XF-AAN0-01 4 72649730 72649730 C G GC Missense_Mutation p.K21N 0.42 deleterious(0.01) benign(0.073) TCGA-XF-AAN0-01 4 77816538 77816538 C A SOWAHB 3'UTR 0.67 TCGA-XF-AAN0-01 4 77816742 77816742 C G SOWAHB Missense_Mutation p.R754T 0.52 deleterious(0) benign(0.227) TCGA-XF-AAN0-01 4 77816769 77816769 C G SOWAHB Missense_Mutation p.R745T 0.53 deleterious(0.02) benign(0.227) TCGA-XF-AAN0-01 4 7820893 7820893 G A AFAP1 Silent p.I244I 0.53 TCGA-XF-AAN0-01 4 88394799 88394799 C G SPARCL1 3'UTR 0.40 TCGA-XF-AAN0-01 5 126158476 126158476 C T LMNB1 Nonsense_Mutation p.Q464* 0.42 TCGA-XF-AAN0-01 5 132149838 132149838 G A SOWAHA Silent p.E175E 0.36 TCGA-XF-AAN0-01 5 1323913 1323913 G C CLPTM1L Missense_Mutation p.I423M 0.25 tolerated(0.25) benign(0.017) TCGA-XF-AAN0-01 5 139936834 139936834 C T SRA1 Missense_Mutation p.D29N 0.30 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN0-01 5 140070805 140070805 C A HARS Nonsense_Mutation p.E29* 0.31 TCGA-XF-AAN0-01 5 140070818 140070818 C T HARS Silent p.Q24Q 0.38 TCGA-XF-AAN0-01 5 140516338 140516338 C G PCDHB5 Missense_Mutation p.S441C 0.33 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-XF-AAN0-01 5 145883548 145883548 C T TCERG1 Silent p.F903F 0.17 TCGA-XF-AAN0-01 5 14751227 14751227 T C ANKH Missense_Mutation p.Y213C 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN0-01 5 153432625 153432625 G C MFAP3 Missense_Mutation p.M147I 0.36 deleterious(0.01) probably_damaging(0.958) TCGA-XF-AAN0-01 5 169474535 169474535 G A DOCK2 Missense_Mutation p.E1330K 0.25 deleterious(0.01) benign(0.085) TCGA-XF-AAN0-01 5 175958522 175958522 G A RNF44 Missense_Mutation p.P136L 0.33 deleterious(0) probably_damaging(0.971) TCGA-XF-AAN0-01 5 175958610 175958610 G A RNF44 Silent p.L107L 0.15 TCGA-XF-AAN0-01 5 176016155 176016155 G A CDHR2 Missense_Mutation p.E994K 0.06 tolerated(0.18) benign(0.344) TCGA-XF-AAN0-01 5 177547423 177547423 C A N4BP3 Missense_Mutation p.S192Y 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-XF-AAN0-01 5 32061183 32061183 G C PDZD2 Missense_Mutation p.L798F 0.28 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 5 37180122 37180122 C T C5orf42 Missense_Mutation p.E1912K 0.36 deleterious(0.03) possibly_damaging(0.487) TCGA-XF-AAN0-01 5 43298983 43298983 G C HMGCS1 Missense_Mutation p.Q29E 0.27 deleterious(0.02) possibly_damaging(0.816) TCGA-XF-AAN0-01 5 45695923 45695923 G A HCN1 Silent p.Y91Y 0.09 TCGA-XF-AAN0-01 5 52370947 52370947 T G ITGA2 Silent p.S907S 0.25 TCGA-XF-AAN0-01 6 108616389 108616389 C G LACE1 Missense_Mutation p.L36V 0.47 tolerated_low_confidence(1) benign(0.01) TCGA-XF-AAN0-01 6 117725507 117725507 G C ROS1 Missense_Mutation p.S125C 0.14 deleterious(0.01) probably_damaging(1) TCGA-XF-AAN0-01 6 132910579 132910579 G A TAAR5 Silent p.L83L 0.21 TCGA-XF-AAN0-01 6 144769802 144769802 C T UTRN Missense_Mutation p.R657C 0.30 deleterious(0.04) possibly_damaging(0.582) TCGA-XF-AAN0-01 6 152420078 152420078 G C ESR1 Missense_Mutation p.E589Q 0.70 tolerated_low_confidence(0.14) benign(0.311) TCGA-XF-AAN0-01 6 154749283 154749283 C G CNKSR3 Silent p.V236V 0.14 TCGA-XF-AAN0-01 6 16143376 16143376 G A MYLIP Missense_Mutation p.G197E 0.12 deleterious(0.01) benign(0.044) TCGA-XF-AAN0-01 6 17600920 17600920 G C FAM8A1 Missense_Mutation p.E94Q 0.50 tolerated(0.12) probably_damaging(0.983) TCGA-XF-AAN0-01 6 27841097 27841097 C G HIST1H4L Missense_Mutation p.E64D 0.18 deleterious(0.03) benign(0.172) TCGA-XF-AAN0-01 6 28333694 28333694 C T ZKSCAN3 Missense_Mutation p.H417Y 0.10 deleterious(0) probably_damaging(0.931) TCGA-XF-AAN0-01 6 28554491 28554491 C T SCAND3 Missense_Mutation p.E2K 0.45 tolerated_low_confidence(0.08) benign(0.017) TCGA-XF-AAN0-01 6 31778204 31778204 C T HSPA1L Missense_Mutation p.E516K 0.42 deleterious_low_confidence(0) benign(0.297) TCGA-XF-AAN0-01 6 32065625 32065625 G T TNXB Silent p.L117L 0.50 TCGA-XF-AAN0-01 6 33383682 33383682 C T PHF1 Missense_Mutation p.S504F 0.24 deleterious(0.01) benign(0.061) TCGA-XF-AAN0-01 6 35959485 35959485 C T SLC26A8 Missense_Mutation p.R298K 0.54 tolerated(0.52) benign(0.122) TCGA-XF-AAN0-01 6 42975953 42975953 C T PPP2R5D Missense_Mutation p.T291M 0.37 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN0-01 6 44328274 44328274 C G SPATS1 Missense_Mutation p.P127A 0.42 deleterious(0) benign(0.22) TCGA-XF-AAN0-01 6 46620974 46620974 G C SLC25A27 Missense_Mutation p.Q15H 0.21 tolerated(0.11) benign(0.288) TCGA-XF-AAN0-01 6 56819323 56819323 G C BEND6 5'Flank 0.15 TCGA-XF-AAN0-01 6 72006445 72006445 G C OGFRL1 Missense_Mutation p.G206A 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 6 7373863 7373863 G A CAGE1 Nonsense_Mutation p.Q397* 0.22 TCGA-XF-AAN0-01 6 80223453 80223453 G A LCA5 Missense_Mutation p.R66W 0.44 deleterious(0) possibly_damaging(0.885) TCGA-XF-AAN0-01 6 82891615 82891615 G C IBTK Missense_Mutation p.Q1236E 0.24 tolerated(0.72) benign(0.004) TCGA-XF-AAN0-01 6 88853767 88853767 C T CNR1 Silent p.R409R 0.18 TCGA-XF-AAN0-01 6 90491182 90491182 C G MDN1 Missense_Mutation p.E527Q 0.12 benign(0.022) TCGA-XF-AAN0-01 6 90491272 90491272 C T MDN1 Missense_Mutation p.D497N 0.19 benign(0.03) TCGA-XF-AAN0-01 7 100695085 100695085 G A MUC17 Silent p.E4315E 0.39 TCGA-XF-AAN0-01 7 107735684 107735684 C T LAMB4 Missense_Mutation p.E487K 0.28 tolerated(0.07) benign(0.04) TCGA-XF-AAN0-01 7 117432558 117432558 A G CTTNBP2 Missense_Mutation p.L231P 0.41 deleterious(0) probably_damaging(0.992) TCGA-XF-AAN0-01 7 121650878 121650878 C T PTPRZ1 Missense_Mutation p.T593I 0.38 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-XF-AAN0-01 7 138602099 138602099 G T KIAA1549 Nonsense_Mutation p.S758* 0.32 TCGA-XF-AAN0-01 7 148529804 148529804 G A EZH2 Silent p.V95V 0.34 TCGA-XF-AAN0-01 7 149523591 149523591 C T SSPO RNA 0.29 TCGA-XF-AAN0-01 7 16502464 16502464 G C SOSTDC1 Silent p.L110L 0.33 TCGA-XF-AAN0-01 7 31918724 31918724 C G PDE1C Missense_Mutation p.D164H 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-XF-AAN0-01 7 36447538 36447538 C G ANLN Missense_Mutation p.Q357E 0.40 tolerated(0.46) benign(0.006) TCGA-XF-AAN0-01 7 45077884 45077884 C T CCM2 Silent p.F42F 0.28 TCGA-XF-AAN0-01 7 70246732 70246732 C G AUTS2 Missense_Mutation p.F712L 0.25 tolerated(0.06) possibly_damaging(0.733) TCGA-XF-AAN0-01 7 74148305 74148305 G C GTF2I Missense_Mutation p.D449H 0.33 deleterious(0.02) possibly_damaging(0.479) TCGA-XF-AAN0-01 7 75028242 75028242 G A TRIM73 Missense_Mutation p.E9K 0.17 deleterious_low_confidence(0.02) benign(0.137) TCGA-XF-AAN0-01 7 75028290 75028290 G T TRIM73 Nonsense_Mutation p.E25* 0.19 TCGA-XF-AAN0-01 7 76254879 76254879 C G POMZP3 Missense_Mutation p.E63Q 0.29 deleterious_low_confidence(0) unknown(0) TCGA-XF-AAN0-01 7 76631508 76631508 C T UPK3B Intron 0.10 TCGA-XF-AAN0-01 7 86998691 86998691 G C CROT Splice_Site p.X211_splice 0.45 TCGA-XF-AAN0-01 7 99308369 99308369 C G CYP3A7 Missense_Mutation p.V338L 0.07 tolerated(0.1) benign(0.004) TCGA-XF-AAN0-01 7 99445195 99445195 C G CYP3A43 Missense_Mutation p.P135A 0.37 deleterious(0) probably_damaging(0.933) TCGA-XF-AAN0-01 8 101276363 101276363 C T RNF19A Missense_Mutation p.R456Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN0-01 8 121528291 121528291 G C MTBP Missense_Mutation p.L702F 0.32 deleterious(0) probably_damaging(0.969) TCGA-XF-AAN0-01 8 121535570 121535570 G A MTBP Silent p.K903K 0.32 TCGA-XF-AAN0-01 8 125464186 125464186 G A TRMT12 Missense_Mutation p.E340K 0.51 deleterious(0.03) benign(0.018) TCGA-XF-AAN0-01 8 133141979 133141979 G A KCNQ3 Missense_Mutation p.P717S 0.08 tolerated(0.09) benign(0.001) TCGA-XF-AAN0-01 8 141874461 141874461 G C PTK2 Missense_Mutation p.L134V 0.45 tolerated(0.32) benign(0.005) TCGA-XF-AAN0-01 8 145748396 145748396 G T LRRC24 Silent p.I335I 0.17 TCGA-XF-AAN0-01 8 25287354 25287354 C T KCTD9 3'UTR 0.35 TCGA-XF-AAN0-01 8 26722055 26722055 G A ADRA1A Silent p.L144L 0.29 TCGA-XF-AAN0-01 8 42407698 42407698 G A SMIM19 Missense_Mutation p.D91N 0.11 deleterious(0.01) benign(0.3) TCGA-XF-AAN0-01 8 59409282 59409282 G T CYP7A1 Silent p.L263L 0.45 TCGA-XF-AAN0-01 8 59409402 59409402 G T CYP7A1 Silent p.L223L 0.30 TCGA-XF-AAN0-01 8 61765126 61765126 G A CHD7 Silent p.V1988V 0.31 TCGA-XF-AAN0-01 8 6479176 6479176 G A MCPH1 Missense_Mutation p.A806T 0.13 tolerated(0.15) possibly_damaging(0.799) TCGA-XF-AAN0-01 8 67563733 67563733 C T VCPIP1 Silent p.Q919Q 0.20 TCGA-XF-AAN0-01 8 70550758 70550758 C T SULF1 Missense_Mutation p.T769M 0.09 tolerated(0.11) benign(0.154) TCGA-XF-AAN0-01 8 95500947 95500947 G T KIAA1429 Missense_Mutation p.S1809Y 0.36 deleterious(0) possibly_damaging(0.781) TCGA-XF-AAN0-01 9 100105799 100105799 G C CCDC180 Missense_Mutation p.E862Q 0.42 tolerated(0.08) possibly_damaging(0.607) TCGA-XF-AAN0-01 9 123540762 123540762 G A FBXW2 Silent p.I184I 0.22 TCGA-XF-AAN0-01 9 127262899 127262899 G A NR5A1 Missense_Mutation p.R114W 0.32 deleterious(0) probably_damaging(0.973) TCGA-XF-AAN0-01 9 127644113 127644113 C G GOLGA1 Missense_Mutation p.E696Q 0.39 tolerated(0.13) possibly_damaging(0.864) TCGA-XF-AAN0-01 9 131381181 131381181 C G SPTAN1 Missense_Mutation p.Q1878E 0.31 deleterious(0.02) probably_damaging(0.954) TCGA-XF-AAN0-01 9 131761996 131761996 G C NUP188 Missense_Mutation p.S1252T 0.16 tolerated(0.51) benign(0.004) TCGA-XF-AAN0-01 9 131832215 131832215 C T FAM73B Nonsense_Mutation p.Q516* 0.34 TCGA-XF-AAN0-01 9 131832238 131832238 C G FAM73B Missense_Mutation p.F523L 0.31 deleterious(0.01) possibly_damaging(0.583) TCGA-XF-AAN0-01 9 134360138 134360138 C G PRRC2B Silent p.L1842L 0.28 TCGA-XF-AAN0-01 9 135116296 135116296 G A NTNG2 Splice_Site p.X408_splice 0.32 TCGA-XF-AAN0-01 9 135804161 135804161 G T TSC1 Silent p.L33L 0.36 TCGA-XF-AAN0-01 9 135929290 135929290 C G GTF3C5 Missense_Mutation p.Q317E 0.37 deleterious(0) probably_damaging(1) TCGA-XF-AAN0-01 9 140870462 140870462 C T CACNA1B Silent p.F549F 0.20 TCGA-XF-AAN0-01 9 140948327 140948327 G A CACNA1B Silent p.L1279L 0.34 TCGA-XF-AAN0-01 9 32630161 32630161 C G TAF1L Missense_Mutation p.R1806T 0.21 deleterious_low_confidence(0.04) benign(0.242) TCGA-XF-AAN0-01 9 32631017 32631017 C T TAF1L Missense_Mutation p.D1521N 0.32 tolerated(0.56) benign(0.056) TCGA-XF-AAN0-01 9 33385110 33385110 C T AQP7 Missense_Mutation p.E308K 0.34 tolerated(0.86) benign(0.014) TCGA-XF-AAN0-01 9 33385123 33385123 C G AQP7 Missense_Mutation p.K303N 0.32 deleterious(0.03) possibly_damaging(0.776) TCGA-XF-AAN0-01 9 35091878 35091878 C T PIGO Nonsense_Mutation p.W669* 0.21 TCGA-XF-AAN0-01 9 35103069 35103069 C T STOML2 Missense_Mutation p.G8D 0.42 tolerated(0.06) unknown(0) TCGA-XF-AAN0-01 9 35807043 35807043 G A NPR2 Missense_Mutation p.R848Q 0.24 deleterious(0.03) benign(0.154) TCGA-XF-AAN0-01 9 95609543 95609543 G C ZNF484 Nonsense_Mutation p.S511* 0.05 TCGA-XF-AAN0-01 9 95618180 95618180 G C ZNF484 Missense_Mutation p.Q52E 0.31 tolerated(0.26) benign(0.057) TCGA-XF-AAN0-01 9 96233438 96233438 G T FAM120A Nonsense_Mutation p.E164* 0.27 TCGA-XF-AAN0-01 9 99838879 99838879 G A RP11-520B13.4 RNA 0.46 TCGA-XF-AAN0-01 X 101572244 101572244 C T NXF2 Intron 0.32 TCGA-XF-AAN0-01 X 111155828 111155828 C T TRPC5 Silent p.L197L 0.73 TCGA-XF-AAN0-01 X 118972485 118972485 G C UPF3B Silent p.L284L 0.69 TCGA-XF-AAN0-01 X 122802115 122802115 C T THOC2 Silent p.A304A 0.65 TCGA-XF-AAN0-01 X 123205004 123205004 C T STAG2 Silent p.F788F 0.66 TCGA-XF-AAN0-01 X 129147490 129147490 C G BCORL1 Missense_Mutation p.P248A 0.58 unknown(0) TCGA-XF-AAN0-01 X 14027261 14027261 C T GEMIN8 Missense_Mutation p.R167H 0.31 tolerated(0.37) benign(0.123) TCGA-XF-AAN0-01 X 148798443 148798443 G C MAGEA11 3'UTR 0.67 TCGA-XF-AAN0-01 X 152813400 152813400 G C ATP2B3 Missense_Mutation p.E356Q 0.28 deleterious(0.02) possibly_damaging(0.734) TCGA-XF-AAN0-01 X 152818580 152818580 G A ATP2B3 Silent p.P637P 0.76 TCGA-XF-AAN0-01 X 155171703 155171703 G C VAMP7 Missense_Mutation p.R228T 0.33 unknown(0) TCGA-XF-AAN0-01 X 17746329 17746329 C G NHS Nonsense_Mutation p.S1347* 0.64 TCGA-XF-AAN0-01 X 44941824 44941830 GAAAATG AAAATT KDM6A Frame_Shift_Del p.E1050Kfs*33 0.46 TCGA-XF-AAN0-01 X 75004496 75004496 G A MAGEE2 Nonsense_Mutation p.R131* 0.73 TCGA-XF-AAN0-01 X 91132077 91132077 G A PCDH11X Missense_Mutation p.E280K 0.59 tolerated(0.87) benign(0.407) TCGA-XF-AAN1-01 10 11363177 11363177 G A CELF2 Silent p.A374A 0.44 TCGA-XF-AAN1-01 10 124399735 124399735 C T DMBT1 Silent p.V2245V 0.46 TCGA-XF-AAN1-01 10 15688901 15688901 C T ITGA8 Missense_Mutation p.G384E 0.33 deleterious(0) probably_damaging(0.992) TCGA-XF-AAN1-01 10 27303613 27303613 C G ANKRD26 Missense_Mutation p.E1512Q 0.30 tolerated(0.07) probably_damaging(0.971) TCGA-XF-AAN1-01 11 118534104 118534104 G A TREH Missense_Mutation p.A45V 0.64 deleterious(0) possibly_damaging(0.788) TCGA-XF-AAN1-01 11 120319046 120319046 C G ARHGEF12 Missense_Mutation p.P576A 0.45 deleterious(0) probably_damaging(0.926) TCGA-XF-AAN1-01 11 128839534 128839534 G A ARHGAP32 Silent p.G1844G 0.44 TCGA-XF-AAN1-01 11 64956166 64956166 G T CAPN1 Nonsense_Mutation p.E372* 0.60 TCGA-XF-AAN1-01 11 89135536 89135536 C A NOX4 Missense_Mutation p.K268N 0.37 tolerated(0.25) benign(0.002) TCGA-XF-AAN1-01 11 99827718 99827718 C T CNTN5 Missense_Mutation p.T285M 0.36 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN1-01 12 34179787 34179787 C A ALG10 Missense_Mutation p.F453L 0.47 deleterious(0.04) benign(0.017) TCGA-XF-AAN1-01 13 101756675 101756675 C G NALCN Missense_Mutation p.G954R 0.41 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN1-01 13 102047641 102047641 C T NALCN Missense_Mutation p.E62K 0.45 tolerated(0.22) benign(0.079) TCGA-XF-AAN1-01 13 51943210 51943210 C G INTS6 Missense_Mutation p.E781Q 0.45 tolerated(0.46) benign(0.01) TCGA-XF-AAN1-01 13 94482693 94482693 C T GPC6 Silent p.D202D 0.48 TCGA-XF-AAN1-01 14 105174267 105174267 C T INF2 Missense_Mutation p.R555W 0.23 deleterious(0) unknown(0) TCGA-XF-AAN1-01 14 21861379 21861379 C T CHD8 Silent p.E2118E 0.47 TCGA-XF-AAN1-01 14 24884859 24884859 T G NYNRIN Missense_Mutation p.S1302A 0.41 tolerated_low_confidence(0.08) benign(0.01) TCGA-XF-AAN1-01 14 34420087 34420087 G A EGLN3 5'UTR 0.53 TCGA-XF-AAN1-01 14 88411995 88411995 G A GALC Silent p.G524G 0.42 TCGA-XF-AAN1-01 15 34356162 34356162 C T CHRM5 Missense_Mutation p.T415M 0.16 deleterious(0.04) benign(0.398) TCGA-XF-AAN1-01 15 45695688 45695688 T A SPATA5L1 Missense_Mutation p.L354Q 0.24 deleterious(0) probably_damaging(0.983) TCGA-XF-AAN1-01 15 64495385 64495385 T A CSNK1G1 Missense_Mutation p.T335S 0.42 tolerated(0.08) benign(0.02) TCGA-XF-AAN1-01 15 75979679 75979679 G A CSPG4 Missense_Mutation p.R1243W 0.13 deleterious(0.02) possibly_damaging(0.462) TCGA-XF-AAN1-01 15 75981730 75981730 T C CSPG4 Missense_Mutation p.H559R 0.64 tolerated(0.11) benign(0.046) TCGA-XF-AAN1-01 15 89390571 89390571 G A ACAN Silent p.S509S 0.38 TCGA-XF-AAN1-01 16 18434447 18434447 C A NPIPA8 5'Flank 1.00 TCGA-XF-AAN1-01 16 46716046 46716046 A G VPS35 Silent p.N48N 0.40 TCGA-XF-AAN1-01 16 87782320 87782320 G C KLHDC4 Silent p.L155L 0.43 TCGA-XF-AAN1-01 17 29187504 29187504 G C ATAD5 Missense_Mutation p.E1004Q 0.41 tolerated(0.14) benign(0.033) TCGA-XF-AAN1-01 17 33460469 33460469 C T NLE1 Silent p.A421A 0.29 TCGA-XF-AAN1-01 17 46654347 46654347 A C HOXB4 Missense_Mutation p.S165A 0.54 deleterious(0.01) possibly_damaging(0.739) TCGA-XF-AAN1-01 17 57270934 57270934 G A PRR11 Missense_Mutation p.V162I 0.44 tolerated(0.19) benign(0.081) TCGA-XF-AAN1-01 17 57758837 57758837 C T CLTC Nonsense_Mutation p.Q1083* 0.09 TCGA-XF-AAN1-01 17 72608881 72608881 C T CD300E Missense_Mutation p.V177M 0.43 deleterious(0) benign(0.005) TCGA-XF-AAN1-01 17 72926502 72926502 C T OTOP2 Silent p.L258L 0.28 TCGA-XF-AAN1-01 17 78321172 78321172 A T RNF213 Missense_Mutation p.S3013C 0.47 probably_damaging(0.962) TCGA-XF-AAN1-01 17 80790298 80790298 C A ZNF750 Missense_Mutation p.K11N 0.42 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN1-01 19 20044676 20044676 G C ZNF93 Missense_Mutation p.K304N 0.43 deleterious(0) probably_damaging(0.913) TCGA-XF-AAN1-01 19 42804381 42804381 C T PAFAH1B3 Missense_Mutation p.G76D 0.07 tolerated(0.61) benign(0.158) TCGA-XF-AAN1-01 19 46815896 46815896 C T HIF3A Silent p.V337V 0.22 TCGA-XF-AAN1-01 19 6534930 6534930 G C TNFSF9 Silent p.L206L 0.28 TCGA-XF-AAN1-01 19 8201101 8201101 C T FBN3 Missense_Mutation p.A480T 0.48 tolerated(0.57) benign(0.158) TCGA-XF-AAN1-01 1 100154787 100154787 C T PALMD Missense_Mutation p.P324L 0.47 tolerated(0.23) benign(0) TCGA-XF-AAN1-01 1 115218586 115218586 C A AMPD1 Missense_Mutation p.G509V 0.40 tolerated(0.18) probably_damaging(1) TCGA-XF-AAN1-01 1 154318785 154318785 G C ATP8B2 Missense_Mutation p.E986Q 0.09 tolerated(0.44) probably_damaging(0.995) TCGA-XF-AAN1-01 1 154698405 154698405 T C KCNN3 Missense_Mutation p.Q563R 0.53 deleterious(0.01) benign(0.121) TCGA-XF-AAN1-01 1 196300310 196300310 T C KCNT2 Silent p.P693P 0.48 TCGA-XF-AAN1-01 1 201982393 201982394 - G ELF3 Frame_Shift_Ins p.D259Gfs*42 0.43 TCGA-XF-AAN1-01 1 248084460 248084460 T C OR2T8 Silent p.I47I 0.26 TCGA-XF-AAN1-01 1 3328297 3328297 C T PRDM16 Silent p.P512P 0.46 TCGA-XF-AAN1-01 1 36068948 36068948 G A PSMB2 Missense_Mutation p.P176S 0.36 tolerated(0.07) benign(0.131) TCGA-XF-AAN1-01 1 39381178 39381178 G C RHBDL2 Intron 0.20 TCGA-XF-AAN1-01 1 75086459 75086459 C A C1orf173 Missense_Mutation p.G320V 0.28 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN1-01 1 89573788 89573788 C G GBP2 3'UTR 0.59 TCGA-XF-AAN1-01 20 36014528 36014528 A G SRC Missense_Mutation p.T101A 0.29 tolerated(0.09) benign(0.036) TCGA-XF-AAN1-01 20 61512313 61512313 G A DIDO1 Silent p.C1665C 0.11 TCGA-XF-AAN1-01 21 46057649 46057649 C T KRTAP10-10 Silent p.C105C 0.38 TCGA-XF-AAN1-01 21 47841947 47841947 C T PCNT Missense_Mutation p.A2363V 0.38 possibly_damaging(0.739) TCGA-XF-AAN1-01 22 42341967 42341967 C T CENPM Silent p.R60R 0.50 TCGA-XF-AAN1-01 2 12880461 12880461 C T TRIB2 Silent p.V191V 0.45 TCGA-XF-AAN1-01 2 175264775 175264775 A G SCRN3 Silent p.V95V 0.45 TCGA-XF-AAN1-01 2 179482162 179482162 G C TTN Missense_Mutation p.L15884V 0.40 TCGA-XF-AAN1-01 2 202070617 202070617 C G CASP10 Missense_Mutation p.T245R 0.37 tolerated(0.53) benign(0.071) TCGA-XF-AAN1-01 2 211540510 211540510 C T CPS1 Missense_Mutation p.P1413L 0.52 tolerated(0.61) benign(0.394) TCGA-XF-AAN1-01 2 219255980 219255980 C T SLC11A1 Silent p.N338N 0.32 TCGA-XF-AAN1-01 2 241710404 241710404 G A KIF1A Missense_Mutation p.A442V 0.86 deleterious(0.02) possibly_damaging(0.852) TCGA-XF-AAN1-01 2 74326457 74326457 G A TET3 Missense_Mutation p.E973K 0.47 deleterious(0) probably_damaging(1) TCGA-XF-AAN1-01 2 74781882 74781882 A G DOK1 Translation_Start_Site p.M1? 0.61 deleterious(0.03) probably_damaging(0.978) TCGA-XF-AAN1-01 3 100364838 100364838 C T GPR128 Silent p.F332F 0.51 TCGA-XF-AAN1-01 3 121409621 121409621 C G GOLGB1 Missense_Mutation p.E2864Q 0.30 possibly_damaging(0.511) TCGA-XF-AAN1-01 3 124839569 124839569 C T SLC12A8 Intron 0.57 TCGA-XF-AAN1-01 3 136646888 136646888 C G NCK1 Silent p.A15A 0.41 TCGA-XF-AAN1-01 3 138179501 138179501 G A ESYT3 Missense_Mutation p.G263R 0.45 deleterious(0) probably_damaging(0.961) TCGA-XF-AAN1-01 3 147108850 147108850 G A ZIC4 Missense_Mutation p.S341L 0.55 deleterious(0.01) probably_damaging(0.921) TCGA-XF-AAN1-01 3 48226163 48226163 C T CDC25A Silent p.G90G 0.20 TCGA-XF-AAN1-01 3 48699002 48699002 C T CELSR3 Missense_Mutation p.E356K 0.49 deleterious(0) possibly_damaging(0.662) TCGA-XF-AAN1-01 4 126371488 126371488 C T FAT4 Missense_Mutation p.S3106F 0.55 possibly_damaging(0.723) TCGA-XF-AAN1-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.33 deleterious(0) probably_damaging(1) TCGA-XF-AAN1-01 4 162697158 162697158 A G FSTL5 Missense_Mutation p.Y160H 0.25 tolerated(0.45) benign(0.001) TCGA-XF-AAN1-01 4 1806092 1806092 A T FGFR3 Missense_Mutation p.S373C 0.91 deleterious(0.03) probably_damaging(0.919) TCGA-XF-AAN1-01 4 39851142 39851142 C T PDS5A Missense_Mutation p.E1073K 0.38 tolerated(0.26) possibly_damaging(0.55) TCGA-XF-AAN1-01 4 520828 520828 C T PIGG Silent p.S690S 0.24 TCGA-XF-AAN1-01 5 140256915 140256915 A T PCDHA12 Missense_Mutation p.I620F 0.42 tolerated_low_confidence(0.05) benign(0.04) TCGA-XF-AAN1-01 5 14358374 14358374 C T TRIO Missense_Mutation p.R712C 0.37 benign(0.052) TCGA-XF-AAN1-01 5 34005931 34005931 C T AMACR Silent p.L107L 0.36 TCGA-XF-AAN1-01 5 37725073 37725073 G T WDR70 Silent p.R545R 0.05 TCGA-XF-AAN1-01 6 105548988 105548988 T C BVES Silent p.T353T 0.52 TCGA-XF-AAN1-01 6 136594327 136594327 T G BCLAF1 Splice_Site p.X618_splice 0.36 TCGA-XF-AAN1-01 6 166836852 166836852 C T RPS6KA2 Silent p.G553G 0.39 TCGA-XF-AAN1-01 6 167719501 167719501 C T UNC93A Silent p.V313V 0.48 TCGA-XF-AAN1-01 6 29911264 29911264 G A HLA-A Missense_Mutation p.C188Y 0.52 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-XF-AAN1-01 6 51875151 51875151 C A PKHD1 Missense_Mutation p.V1903F 0.56 tolerated(0.08) benign(0.334) TCGA-XF-AAN1-01 6 57055235 57055235 C G RAB23 3'UTR 0.05 TCGA-XF-AAN1-01 7 11582732 11582732 A G THSD7A Missense_Mutation p.M489T 0.49 deleterious(0) benign(0) TCGA-XF-AAN1-01 7 149172440 149172440 C A ZNF746 Missense_Mutation p.A325S 0.53 tolerated(0.78) benign(0.028) TCGA-XF-AAN1-01 7 30693204 30693204 C T CRHR2 Missense_Mutation p.V397M 0.24 deleterious(0.02) benign(0.058) TCGA-XF-AAN1-01 7 38393558 38393558 C T TRGV4 Missense_Mutation p.E38K 0.79 tolerated(0.16) benign(0.011) TCGA-XF-AAN1-01 7 50455159 50455159 C A IKZF1 Intron 0.50 TCGA-XF-AAN1-01 7 6777026 6777026 G A PMS2CL RNA 0.52 TCGA-XF-AAN1-01 7 94166999 94166999 G A CASD1 Silent p.K353K 0.37 TCGA-XF-AAN1-01 7 98529037 98529037 G A TRRAP Missense_Mutation p.G1201R 0.47 probably_damaging(0.946) TCGA-XF-AAN1-01 9 131395609 131395609 A G SPTAN1 Missense_Mutation p.N2477S 0.83 tolerated(0.13) benign(0.005) TCGA-XF-AAN1-01 X 105921470 105921470 T C CXorf57 Silent p.S850S 0.44 TCGA-XF-AAN1-01 X 135126623 135126623 T C SLC9A6 Silent p.L616L 0.50 TCGA-XF-AAN1-01 X 16627768 16627768 A T CTPS2 Missense_Mutation p.F529L 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-XF-AAN1-01 X 26212040 26212040 C T MAGEB6 Missense_Mutation p.T26M 0.45 tolerated(0.11) probably_damaging(0.957) TCGA-XF-AAN1-01 X 31089818 31089818 C A FTHL17 Missense_Mutation p.D85Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN1-01 X 70146021 70146021 G T SLC7A3 Missense_Mutation p.A543D 0.52 tolerated(0.06) probably_damaging(0.949) TCGA-XF-AAN1-01 X 74273275 74273275 T A ABCB7 Missense_Mutation p.E731V 0.18 deleterious(0.01) possibly_damaging(0.854) TCGA-XF-AAN1-01 X 86772965 86772965 T C KLHL4 Silent p.S23S 0.46 TCGA-XF-AAN2-01 10 104679621 104679621 G A CNNM2 Missense_Mutation p.E462K 0.61 deleterious(0) benign(0.035) TCGA-XF-AAN2-01 10 115402729 115402729 G C NRAP Missense_Mutation p.F393L 0.50 tolerated(0.11) probably_damaging(0.989) TCGA-XF-AAN2-01 10 115922804 115922804 C G C10orf118 Missense_Mutation p.G75A 0.60 tolerated_low_confidence(0.08) benign(0.035) TCGA-XF-AAN2-01 10 121595165 121595165 C G MCMBP Missense_Mutation p.E534Q 0.67 tolerated(0.08) benign(0.049) TCGA-XF-AAN2-01 10 124457657 124457657 C T C10orf120 Silent p.L200L 0.65 TCGA-XF-AAN2-01 10 15726043 15726043 C G ITGA8 Missense_Mutation p.Q176H 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-XF-AAN2-01 10 15821080 15821080 C T FAM188A Missense_Mutation p.D417N 0.30 tolerated(0.09) probably_damaging(0.972) TCGA-XF-AAN2-01 10 23257415 23257415 G C ARMC3 Missense_Mutation p.D305H 0.32 deleterious(0.04) possibly_damaging(0.737) TCGA-XF-AAN2-01 10 26434459 26434459 G C MYO3A Missense_Mutation p.G834A 0.31 deleterious(0) probably_damaging(0.971) TCGA-XF-AAN2-01 10 27406597 27406597 C G YME1L1 Missense_Mutation p.E600Q 0.31 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 10 29821001 29821001 C G SVIL Missense_Mutation p.E647Q 0.30 deleterious(0.04) possibly_damaging(0.679) TCGA-XF-AAN2-01 10 3180444 3180444 G A PITRM1 Silent p.L1002L 0.33 TCGA-XF-AAN2-01 10 37447345 37447345 G C ANKRD30A Silent p.L552L 0.34 TCGA-XF-AAN2-01 10 45472912 45472912 G A C10orf10 Silent p.S189S 0.43 TCGA-XF-AAN2-01 10 49376698 49376698 G A FRMPD2 Silent p.V1159V 0.81 TCGA-XF-AAN2-01 10 5798659 5798659 C T FAM208B Silent p.I2230I 0.29 TCGA-XF-AAN2-01 10 5798685 5798685 C T FAM208B Missense_Mutation p.S2239L 0.35 deleterious(0.05) benign(0.104) TCGA-XF-AAN2-01 10 61829868 61829868 C T ANK3 Missense_Mutation p.E3591K 0.36 probably_damaging(0.956) TCGA-XF-AAN2-01 10 64974483 64974483 C A JMJD1C Nonsense_Mutation p.E482* 0.37 TCGA-XF-AAN2-01 10 73050727 73050727 C T UNC5B Silent p.F385F 0.36 TCGA-XF-AAN2-01 10 73375361 73375361 C G CDH23 Missense_Mutation p.I311M 0.24 deleterious(0.02) possibly_damaging(0.662) TCGA-XF-AAN2-01 10 75157941 75157941 C G ANXA7 Missense_Mutation p.G86A 0.45 tolerated(0.31) possibly_damaging(0.794) TCGA-XF-AAN2-01 10 75158007 75158007 C T ANXA7 Missense_Mutation p.G64E 0.43 tolerated(0.08) unknown(0) TCGA-XF-AAN2-01 10 81319100 81319100 C G SFTPA2 Missense_Mutation p.R47T 0.23 tolerated(0.06) probably_damaging(0.957) TCGA-XF-AAN2-01 10 90492004 90492004 G A LIPK Silent p.K164K 0.58 TCGA-XF-AAN2-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.53 TCGA-XF-AAN2-01 11 113085174 113085174 G A NCAM1 Missense_Mutation p.D393N 0.42 deleterious(0) probably_damaging(0.915) TCGA-XF-AAN2-01 11 113711320 113711320 C T USP28 Silent p.Q178Q 0.57 TCGA-XF-AAN2-01 11 14526776 14526776 C G PSMA1 Missense_Mutation p.E258Q 0.38 tolerated(0.21) benign(0.02) TCGA-XF-AAN2-01 11 17430001 17430001 C A ABCC8 Nonsense_Mutation p.E920* 0.34 TCGA-XF-AAN2-01 11 18051117 18051117 C T TPH1 Missense_Mutation p.D138N 0.35 deleterious(0) probably_damaging(0.987) TCGA-XF-AAN2-01 11 18124839 18124839 C T SAAL1 Missense_Mutation p.E64K 0.32 deleterious(0.01) possibly_damaging(0.794) TCGA-XF-AAN2-01 11 18955396 18955396 G A MRGPRX1 Silent p.I312I 0.40 TCGA-XF-AAN2-01 11 18955407 18955407 G A MRGPRX1 Missense_Mutation p.P309S 0.36 tolerated(0.09) benign(0.08) TCGA-XF-AAN2-01 11 1955621 1955621 G A TNNT3 Silent p.K142K 0.30 TCGA-XF-AAN2-01 11 24759795 24759795 C T LUZP2 Silent p.L94L 0.37 TCGA-XF-AAN2-01 11 27114841 27114841 G C BBOX1 Missense_Mutation p.G154A 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAN2-01 11 31671767 31671767 G C ELP4 Missense_Mutation p.E381Q 0.39 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN2-01 11 43333604 43333604 G C API5 5'UTR 0.32 TCGA-XF-AAN2-01 11 48145334 48145334 G A PTPRJ Silent p.L262L 0.31 TCGA-XF-AAN2-01 11 48238598 48238598 C T OR4B1 Silent p.F79F 0.34 TCGA-XF-AAN2-01 11 5221421 5221421 G T OR51V1 Silent p.I170I 0.38 TCGA-XF-AAN2-01 11 55735289 55735289 C T OR10AG1 Silent p.L217L 0.37 TCGA-XF-AAN2-01 11 56954784 56954784 G A LRRC55 Missense_Mutation p.E286K 0.36 tolerated(0.14) benign(0.359) TCGA-XF-AAN2-01 11 61083760 61083760 G C DDB1 Missense_Mutation p.I469M 0.32 deleterious(0.01) benign(0.424) TCGA-XF-AAN2-01 11 62285506 62285506 C G AHNAK Silent p.V5461V 0.44 TCGA-XF-AAN2-01 11 62285805 62285805 C T AHNAK Missense_Mutation p.D5362N 0.38 probably_damaging(0.987) TCGA-XF-AAN2-01 11 62286735 62286735 C G AHNAK Missense_Mutation p.D5052H 0.33 probably_damaging(1) TCGA-XF-AAN2-01 11 63996766 63996766 C T NUDT22 Silent p.I209I 0.36 TCGA-XF-AAN2-01 11 65721160 65721160 G T TSGA10IP RNA 0.43 TCGA-XF-AAN2-01 11 69970453 69970453 C T ANO1 Intron 0.31 TCGA-XF-AAN2-01 11 71946178 71946178 G C INPPL1 Missense_Mutation p.D812H 0.35 deleterious(0) possibly_damaging(0.838) TCGA-XF-AAN2-01 11 96092326 96092326 C G CCDC82 Missense_Mutation p.R466T 0.50 tolerated(0.41) benign(0.003) TCGA-XF-AAN2-01 12 100732781 100732781 C G SCYL2 Missense_Mutation p.S874C 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.599) TCGA-XF-AAN2-01 12 104335404 104335404 T C HSP90B1 Intron 0.22 TCGA-XF-AAN2-01 12 105508984 105508984 G C KIAA1033 Missense_Mutation p.G115A 0.17 tolerated(1) benign(0.01) TCGA-XF-AAN2-01 12 120587840 120587840 G C GCN1L1 Silent p.L1439L 0.14 TCGA-XF-AAN2-01 12 121431453 121431453 G C HNF1A Missense_Mutation p.E219D 0.22 tolerated(0.21) benign(0.004) TCGA-XF-AAN2-01 12 123338615 123338615 C T HIP1R Silent p.I201I 0.46 TCGA-XF-AAN2-01 12 124349189 124349189 T C DNAH10 Missense_Mutation p.M2201T 0.26 probably_damaging(1) TCGA-XF-AAN2-01 12 124422156 124422156 C G CCDC92 Missense_Mutation p.E149Q 0.30 tolerated(0.6) probably_damaging(0.999) TCGA-XF-AAN2-01 12 13128239 13128239 C T HEBP1 3'UTR 0.29 TCGA-XF-AAN2-01 12 132625036 132625036 G A DDX51 Silent p.F535F 0.12 TCGA-XF-AAN2-01 12 133381425 133381425 C T GOLGA3 Missense_Mutation p.E492K 0.22 deleterious(0) possibly_damaging(0.686) TCGA-XF-AAN2-01 12 14804398 14804398 C A GUCY2C Silent p.V551V 0.30 TCGA-XF-AAN2-01 12 18876447 18876447 G A PLCZ1 Silent p.I55I 0.26 TCGA-XF-AAN2-01 12 1943797 1943797 G T LRTM2 Missense_Mutation p.K341N 0.31 deleterious(0) possibly_damaging(0.893) TCGA-XF-AAN2-01 12 1993960 1993960 C G CACNA2D4 Missense_Mutation p.E416Q 0.20 tolerated(0.14) benign(0.082) TCGA-XF-AAN2-01 12 21028355 21028355 G A SLCO1B3 Missense_Mutation p.R305K 0.28 tolerated(1) benign(0.004) TCGA-XF-AAN2-01 12 27803008 27803008 G C PPFIBP1 Missense_Mutation p.L179F 0.42 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN2-01 12 2968012 2968012 G A FOXM1 Missense_Mutation p.S733L 0.35 tolerated(0.23) benign(0.049) TCGA-XF-AAN2-01 12 39716623 39716623 G C KIF21A Nonsense_Mutation p.S1173* 0.34 TCGA-XF-AAN2-01 12 42835288 42835288 C G PPHLN1 Intron 0.42 TCGA-XF-AAN2-01 12 442760 442760 C T KDM5A Missense_Mutation p.E516K 0.38 tolerated(0.31) benign(0.05) TCGA-XF-AAN2-01 12 46231142 46231142 G C ARID2 Silent p.L354L 0.32 TCGA-XF-AAN2-01 12 48084423 48084423 C G RPAP3 Splice_Site p.X182_splice 0.37 TCGA-XF-AAN2-01 12 48173996 48173997 - T SLC48A1 Frame_Shift_Ins p.L126Afs*11 0.26 TCGA-XF-AAN2-01 12 4881658 4881658 G A GALNT8 Silent p.K603K 0.28 TCGA-XF-AAN2-01 12 50529517 50529517 G A CERS5 Silent p.F290F 0.25 TCGA-XF-AAN2-01 12 52884379 52884379 C T KRT6A Missense_Mutation p.E351K 0.36 deleterious(0) probably_damaging(0.968) TCGA-XF-AAN2-01 12 54645865 54645865 G A CBX5 Missense_Mutation p.S95L 0.33 tolerated(0.17) benign(0) TCGA-XF-AAN2-01 12 56577956 56577956 C T SMARCC2 Intron 0.42 TCGA-XF-AAN2-01 12 57866333 57866333 C T ARHGAP9 Silent p.L721L 0.36 TCGA-XF-AAN2-01 12 60165093 60165093 C A SLC16A7 Missense_Mutation p.S104Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-XF-AAN2-01 12 66308734 66308734 C T HMGA2 Intron 0.39 TCGA-XF-AAN2-01 12 70004086 70004086 C T LRRC10 Missense_Mutation p.R178Q 0.10 tolerated(0.28) benign(0) TCGA-XF-AAN2-01 12 70794070 70794070 G C KCNMB4 Missense_Mutation p.E140Q 0.27 tolerated(0.16) benign(0.422) TCGA-XF-AAN2-01 12 72030746 72030746 C T ZFC3H1 Missense_Mutation p.E607K 0.53 deleterious(0.03) probably_damaging(0.986) TCGA-XF-AAN2-01 12 75693620 75693620 G A CAPS2 Missense_Mutation p.S303L 0.24 deleterious(0.01) possibly_damaging(0.839) TCGA-XF-AAN2-01 12 7899978 7899978 C T CLEC4C 5'UTR 0.33 TCGA-XF-AAN2-01 12 7947706 7947706 G A NANOG 3'UTR 0.20 TCGA-XF-AAN2-01 12 80200099 80200099 C T PPP1R12A Missense_Mutation p.R557K 0.20 tolerated(0.36) benign(0.005) TCGA-XF-AAN2-01 12 82752178 82752178 C T CCDC59 5'UTR 0.47 TCGA-XF-AAN2-01 12 8374596 8374596 G C FAM90A1 Missense_Mutation p.S406C 0.25 deleterious(0) possibly_damaging(0.472) TCGA-XF-AAN2-01 12 8672821 8672821 G C CLEC4D Splice_Site p.X129_splice 0.45 TCGA-XF-AAN2-01 12 8672847 8672847 G A CLEC4D Missense_Mutation p.R137K 0.36 tolerated(0.33) benign(0.057) TCGA-XF-AAN2-01 12 9313684 9313684 C G PZP Missense_Mutation p.L939F 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-XF-AAN2-01 12 96692698 96692698 C T CDK17 Missense_Mutation p.E222K 0.39 deleterious(0) possibly_damaging(0.818) TCGA-XF-AAN2-01 13 103289587 103289587 G A TPP2 Missense_Mutation p.E612K 0.26 tolerated(0.19) possibly_damaging(0.887) TCGA-XF-AAN2-01 13 103701709 103701709 G C SLC10A2 Silent p.L283L 0.26 TCGA-XF-AAN2-01 13 27333462 27333462 G T GPR12 Missense_Mutation p.S168Y 0.48 deleterious(0) possibly_damaging(0.781) TCGA-XF-AAN2-01 13 32376282 32376282 G C RXFP2 Splice_Site p.X669_splice 0.32 TCGA-XF-AAN2-01 13 32826051 32826051 C G FRY Missense_Mutation p.L2403V 0.51 tolerated(0.12) probably_damaging(0.998) TCGA-XF-AAN2-01 13 33327482 33327482 C G PDS5B Missense_Mutation p.Q917E 0.51 tolerated(0.49) benign(0.003) TCGA-XF-AAN2-01 13 37678363 37678363 C T CSNK1A1L 3'UTR 0.43 TCGA-XF-AAN2-01 13 39263784 39263784 C T FREM2 Missense_Mutation p.S768L 0.34 tolerated(0.11) benign(0.011) TCGA-XF-AAN2-01 13 42882732 42882732 C - AKAP11 Frame_Shift_Del p.H1754Ifs*2 0.21 TCGA-XF-AAN2-01 13 43462253 43462253 G C EPSTI1 3'UTR 0.19 TCGA-XF-AAN2-01 13 46638814 46638814 C T CPB2 Silent p.L255L 0.49 TCGA-XF-AAN2-01 13 48881435 48881435 G T RB1 Nonsense_Mutation p.E53* 0.25 TCGA-XF-AAN2-01 13 48954210 48954210 C T RB1 Nonsense_Mutation p.Q471* 0.34 TCGA-XF-AAN2-01 13 48985593 48985593 C T LPAR6 Missense_Mutation p.E323K 0.52 tolerated(0.14) benign(0.008) TCGA-XF-AAN2-01 13 61987206 61987206 G C PCDH20 Silent p.V342V 0.44 TCGA-XF-AAN2-01 13 73329354 73329354 G C BORA Nonstop_Mutation p.*560Yext*9 0.30 TCGA-XF-AAN2-01 13 80911179 80911179 C T SPRY2 Missense_Mutation p.C221Y 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-XF-AAN2-01 13 93518710 93518710 G T GPC5 3'UTR 0.28 TCGA-XF-AAN2-01 14 103986600 103986600 G A CKB Missense_Mutation p.H276Y 0.37 tolerated(0.07) benign(0.264) TCGA-XF-AAN2-01 14 105352817 105352817 C T CEP170B Silent p.L747L 0.23 TCGA-XF-AAN2-01 14 19553588 19553588 A G POTEG Missense_Mutation p.R58G 0.05 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-XF-AAN2-01 14 20020049 20020049 T C POTEM Missense_Mutation p.R58G 0.08 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-XF-AAN2-01 14 21967206 21967206 C G METTL3 Missense_Mutation p.E532Q 0.24 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 14 22180598 22180598 C T TRAV2 Silent p.L15L 0.26 TCGA-XF-AAN2-01 14 22217932 22217932 C T TRAV5 Silent p.L95L 0.33 TCGA-XF-AAN2-01 14 23872566 23872566 C G MYH6 Missense_Mutation p.E297Q 0.41 deleterious(0.02) possibly_damaging(0.669) TCGA-XF-AAN2-01 14 24567839 24567839 G A PCK2 Missense_Mutation p.D206N 0.43 tolerated(0.1) benign(0.383) TCGA-XF-AAN2-01 14 24780920 24780920 G A LTB4R2 Silent p.E350E 0.41 TCGA-XF-AAN2-01 14 24806655 24806655 G A RIPK3 Silent p.F304F 0.26 TCGA-XF-AAN2-01 14 24878243 24878243 G A NYNRIN Missense_Mutation p.E415K 0.21 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-XF-AAN2-01 14 24885223 24885223 C T NYNRIN Missense_Mutation p.S1423F 0.23 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-XF-AAN2-01 14 45623214 45623214 C T FANCM Missense_Mutation p.S381L 0.53 deleterious(0) benign(0.251) TCGA-XF-AAN2-01 14 51196399 51196399 G C NIN Missense_Mutation p.H1974D 0.19 deleterious(0.01) benign(0.075) TCGA-XF-AAN2-01 14 51561040 51561040 C A TRIM9 Missense_Mutation p.K206N 0.21 deleterious(0) benign(0.222) TCGA-XF-AAN2-01 14 69847305 69847305 C G ERH Missense_Mutation p.E89Q 0.32 tolerated(0.1) benign(0.256) TCGA-XF-AAN2-01 14 70633746 70633746 G C SLC8A3 Missense_Mutation p.S465C 0.38 deleterious(0.03) benign(0.082) TCGA-XF-AAN2-01 14 70712772 70712772 G A ADAM21P1 RNA 0.18 TCGA-XF-AAN2-01 14 70925822 70925822 C T ADAM21 Nonsense_Mutation p.Q536* 0.42 TCGA-XF-AAN2-01 14 76219287 76219287 C G TTLL5 Silent p.L513L 0.37 TCGA-XF-AAN2-01 14 77245314 77245314 G A VASH1 Missense_Mutation p.E351K 0.34 tolerated(0.14) benign(0.123) TCGA-XF-AAN2-01 14 79175708 79175708 A G NRXN3 Missense_Mutation p.Y84C 0.32 deleterious(0) probably_damaging(0.996) TCGA-XF-AAN2-01 14 89656743 89656743 C T FOXN3 Missense_Mutation p.E266K 0.30 tolerated(0.14) benign(0.009) TCGA-XF-AAN2-01 14 91655351 91655351 C T C14orf159 Silent p.F344F 0.43 TCGA-XF-AAN2-01 15 22864359 22864359 G C TUBGCP5 Missense_Mutation p.D773H 0.28 tolerated(0.31) benign(0.271) TCGA-XF-AAN2-01 15 28171347 28171347 C T OCA2 Missense_Mutation p.D669N 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-XF-AAN2-01 15 34628825 34628825 C T SLC12A6 Silent p.P19P 0.20 TCGA-XF-AAN2-01 15 40660725 40660725 C T DISP2 Silent p.S804S 0.36 TCGA-XF-AAN2-01 15 40660785 40660785 C G DISP2 Missense_Mutation p.F824L 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 15 40756200 40756200 C G BAHD1 Silent p.L652L 0.47 TCGA-XF-AAN2-01 15 41029865 41029865 G A RMDN3 Silent p.L395L 0.24 TCGA-XF-AAN2-01 15 41107939 41107939 G A PPP1R14D Missense_Mutation p.S170L 0.44 tolerated_low_confidence(0.35) benign(0.307) TCGA-XF-AAN2-01 15 43548885 43548885 C G TGM5 Splice_Site p.X146_splice 0.24 TCGA-XF-AAN2-01 15 48729225 48729225 G A FBN1 Silent p.I2143I 0.49 TCGA-XF-AAN2-01 15 57744453 57744453 G A CGNL1 Missense_Mutation p.E674K 0.52 tolerated(0.68) benign(0.005) TCGA-XF-AAN2-01 15 59381927 59381927 C T RNF111 Missense_Mutation p.S880L 0.44 tolerated_low_confidence(0.12) benign(0.258) TCGA-XF-AAN2-01 15 62539297 62539297 C T AC126323.1 5'Flank 0.38 TCGA-XF-AAN2-01 15 67923241 67923241 G A MAP2K5 Silent p.P187P 0.31 TCGA-XF-AAN2-01 15 68126153 68126153 C G SKOR1 Missense_Mutation p.F862L 0.27 deleterious_low_confidence(0) benign(0.294) TCGA-XF-AAN2-01 15 68649536 68649536 C T ITGA11 Silent p.Q234Q 0.33 TCGA-XF-AAN2-01 15 72954863 72954863 C T GOLGA6B Missense_Mutation p.T373M 0.21 tolerated(0.15) benign(0.01) TCGA-XF-AAN2-01 15 81046550 81046550 G A ABHD17C Missense_Mutation p.E277K 0.42 deleterious(0.01) possibly_damaging(0.89) TCGA-XF-AAN2-01 15 83438620 83438620 G C FSD2 Silent p.V428V 0.31 TCGA-XF-AAN2-01 15 91436897 91436897 C T FES Missense_Mutation p.R687W 0.27 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 16 12172749 12172749 C T SNX29 Missense_Mutation p.S460L 0.71 tolerated(0.06) benign(0.05) TCGA-XF-AAN2-01 16 1291638 1291638 C G TPSAB1 Nonsense_Mutation p.S146* 0.38 TCGA-XF-AAN2-01 16 24582458 24582458 A C RBBP6 Silent p.S1357S 0.42 TCGA-XF-AAN2-01 16 27224909 27224909 G A KDM8 Missense_Mutation p.A206T 0.58 tolerated(0.28) benign(0.012) TCGA-XF-AAN2-01 16 30977380 30977380 C T SETD1A Silent p.Y726Y 0.55 TCGA-XF-AAN2-01 16 46746605 46746605 G A MYLK3 Missense_Mutation p.S690L 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 16 49669905 49669905 G C ZNF423 Missense_Mutation p.S1053C 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.864) TCGA-XF-AAN2-01 16 49670625 49670625 C T ZNF423 Missense_Mutation p.S813N 0.61 tolerated(0.41) benign(0.1) TCGA-XF-AAN2-01 16 53495763 53495763 G A RBL2 Splice_Site p.X486_splice 0.68 TCGA-XF-AAN2-01 16 53496559 53496559 G C RBL2 Missense_Mutation p.D518H 0.72 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 16 56485522 56485522 G C OGFOD1 5'UTR 0.56 TCGA-XF-AAN2-01 16 67159865 67159865 C A C16orf70 Missense_Mutation p.P51T 0.55 deleterious(0) probably_damaging(0.996) TCGA-XF-AAN2-01 16 70698045 70698045 C T MTSS1L Silent p.V593V 0.72 TCGA-XF-AAN2-01 17 11607639 11607639 C G DNAH9 Silent p.L1757L 0.27 TCGA-XF-AAN2-01 17 1381931 1381931 G A MYO1C Silent p.I397I 0.33 TCGA-XF-AAN2-01 17 1631404 1631404 C G WDR81 Missense_Mutation p.P1051A 0.24 tolerated(0.57) benign(0.029) TCGA-XF-AAN2-01 17 17921749 17921749 G C ATPAF2 3'UTR 0.36 TCGA-XF-AAN2-01 17 18194165 18194165 C G TOP3A Missense_Mutation p.W486C 0.43 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 17 18220896 18220896 C T SMCR8 Missense_Mutation p.P598L 0.36 tolerated(0.56) benign(0) TCGA-XF-AAN2-01 17 19091383 19091383 G A SNORD3A RNA 0.11 TCGA-XF-AAN2-01 17 2310511 2310511 G A AC006435.1 Silent p.I87I 0.44 TCGA-XF-AAN2-01 17 25950446 25950446 C G KSR1 3'UTR 0.42 TCGA-XF-AAN2-01 17 27014225 27014225 C G SUPT6H Silent p.L940L 0.38 TCGA-XF-AAN2-01 17 36499513 36499513 C T GPR179 Missense_Mutation p.E54K 0.32 deleterious(0.05) benign(0.091) TCGA-XF-AAN2-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.33 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN2-01 17 40275082 40275082 G A HSPB9 Missense_Mutation p.V72M 0.33 deleterious(0.03) possibly_damaging(0.601) TCGA-XF-AAN2-01 17 42275465 42275465 C G ATXN7L3 5'Flank 0.35 TCGA-XF-AAN2-01 17 43592074 43592074 C T LRRC37A4P RNA 0.08 TCGA-XF-AAN2-01 17 44049256 44049256 A C MAPT Silent p.G55G 0.25 TCGA-XF-AAN2-01 17 44073864 44073864 C A MAPT Missense_Mutation p.P554H 0.43 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 17 46673712 46673712 C G HOXB6 3'UTR 0.41 TCGA-XF-AAN2-01 17 46673804 46673804 C T HOXB6 Missense_Mutation p.E216K 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-XF-AAN2-01 17 47246118 47246118 C T B4GALNT2 Missense_Mutation p.H451Y 0.48 tolerated(0.1) possibly_damaging(0.874) TCGA-XF-AAN2-01 17 56572730 56572730 G A MTMR4 Missense_Mutation p.R925W 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-XF-AAN2-01 17 57287728 57287728 G A SMG8 Missense_Mutation p.E106K 0.35 tolerated_low_confidence(0.32) benign(0.002) TCGA-XF-AAN2-01 17 61560498 61560498 C A ACE Missense_Mutation p.P484H 0.39 tolerated(0.08) probably_damaging(0.997) TCGA-XF-AAN2-01 17 63156425 63156425 C G RGS9 Missense_Mutation p.L94V 0.39 tolerated(0.17) possibly_damaging(0.792) TCGA-XF-AAN2-01 17 65141988 65141988 G A HELZ Silent p.F880F 0.39 TCGA-XF-AAN2-01 17 72588299 72588299 C G C17orf77 Silent p.L38L 0.32 TCGA-XF-AAN2-01 17 72959943 72959943 G A HID1 Silent p.I93I 0.39 TCGA-XF-AAN2-01 17 74073168 74073168 C T GALR2 Missense_Mutation p.R274C 0.41 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 17 76120185 76120185 G A TMC6 Silent p.L323L 0.40 TCGA-XF-AAN2-01 17 76120740 76120740 G C TMC6 Silent p.L252L 0.37 TCGA-XF-AAN2-01 17 7667185 7667185 G C DNAH2 Missense_Mutation p.E1005D 0.33 benign(0.012) TCGA-XF-AAN2-01 17 77044007 77044007 G A C1QTNF1 Missense_Mutation p.R228H 0.39 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 17 7836433 7836433 C T CNTROB Silent p.L12L 0.37 TCGA-XF-AAN2-01 17 79079921 79079921 G A BAIAP2 Missense_Mutation p.D438N 0.30 tolerated(0.48) benign(0.004) TCGA-XF-AAN2-01 17 79943433 79943433 C T ASPSCR1 Silent p.F108F 0.42 TCGA-XF-AAN2-01 17 80012789 80012789 C T GPS1 Nonsense_Mutation p.Q249* 0.37 TCGA-XF-AAN2-01 17 80758804 80758804 G A TBCD Silent p.R294R 0.34 TCGA-XF-AAN2-01 18 12325380 12325380 G A TUBB6 Missense_Mutation p.E198K 0.42 deleterious_low_confidence(0.03) benign(0.283) TCGA-XF-AAN2-01 18 13826052 13826052 C T MC5R Silent p.I96I 0.31 TCGA-XF-AAN2-01 18 13826334 13826334 C T MC5R Silent p.L190L 0.39 TCGA-XF-AAN2-01 18 19358105 19358105 C G MIB1 Missense_Mutation p.F226L 0.38 deleterious(0.05) benign(0.006) TCGA-XF-AAN2-01 18 22805860 22805860 G A ZNF521 Silent p.P674P 0.36 TCGA-XF-AAN2-01 18 28654728 28654728 G A DSC2 Silent p.I603I 0.38 TCGA-XF-AAN2-01 18 31324989 31324989 C G ASXL3 Missense_Mutation p.A1726G 0.38 benign(0.008) TCGA-XF-AAN2-01 18 47799322 47799322 C T MBD1 Missense_Mutation p.V530I 0.43 tolerated_low_confidence(0.08) benign(0.017) TCGA-XF-AAN2-01 18 47799841 47799841 C A MBD1 Nonsense_Mutation p.E483* 0.31 TCGA-XF-AAN2-01 18 51820801 51820801 G T POLI Missense_Mutation p.K729N 0.41 deleterious(0) possibly_damaging(0.791) TCGA-XF-AAN2-01 18 63547879 63547879 G C CDH7 Missense_Mutation p.D703H 0.37 deleterious(0) benign(0.035) TCGA-XF-AAN2-01 18 6985581 6985581 C G LAMA1 Missense_Mutation p.R1814T 0.36 tolerated(0.43) benign(0.021) TCGA-XF-AAN2-01 19 1081901 1081901 G A HMHA1 Missense_Mutation p.E836K 0.48 deleterious(0) probably_damaging(0.964) TCGA-XF-AAN2-01 19 10887858 10887863 CGTCTT - DNM2 In_Frame_Del p.D218_L220delinsE 0.38 TCGA-XF-AAN2-01 19 11034075 11034075 G C YIPF2 Missense_Mutation p.F281L 0.33 deleterious(0) possibly_damaging(0.619) TCGA-XF-AAN2-01 19 11313334 11313334 C T DOCK6 Missense_Mutation p.D1763N 0.40 deleterious(0) probably_damaging(0.979) TCGA-XF-AAN2-01 19 11362826 11362826 G A DOCK6 Missense_Mutation p.S159F 0.47 deleterious(0.05) benign(0.078) TCGA-XF-AAN2-01 19 11660659 11660659 C G CNN1 3'UTR 0.34 TCGA-XF-AAN2-01 19 11660729 11660729 C T CNN1 3'UTR 0.35 TCGA-XF-AAN2-01 19 13035075 13035075 C T FARSA Silent p.L426L 0.26 TCGA-XF-AAN2-01 19 1376552 1376552 G T MUM1 Nonsense_Mutation p.E705* 0.33 TCGA-XF-AAN2-01 19 13888913 13888913 G A C19orf53 Missense_Mutation p.M67I 0.34 tolerated(0.11) benign(0.22) TCGA-XF-AAN2-01 19 15740229 15740229 C T CYP4F8 RNA 0.25 TCGA-XF-AAN2-01 19 20229375 20229375 G C ZNF90 Missense_Mutation p.E338Q 0.39 deleterious(0.01) probably_damaging(0.918) TCGA-XF-AAN2-01 19 20229527 20229527 G C ZNF90 Missense_Mutation p.K388N 0.34 deleterious(0.02) possibly_damaging(0.728) TCGA-XF-AAN2-01 19 21239683 21239683 C G ZNF430 Nonsense_Mutation p.S190* 0.34 TCGA-XF-AAN2-01 19 23869830 23869830 C T ZNF675 Intron 0.31 TCGA-XF-AAN2-01 19 3155896 3155896 C T GNA15 Silent p.I230I 0.43 TCGA-XF-AAN2-01 19 34912448 34912448 C G PDCD2L Silent p.L274L 0.37 TCGA-XF-AAN2-01 19 37038988 37038988 G C ZNF529 Missense_Mutation p.L158V 0.41 tolerated(0.05) benign(0.008) TCGA-XF-AAN2-01 19 37368114 37368114 G C ZNF345 Missense_Mutation p.G128R 0.34 tolerated(0.3) benign(0.006) TCGA-XF-AAN2-01 19 39075595 39075595 C T RYR1 Missense_Mutation p.H4887Y 0.28 benign(0.126) TCGA-XF-AAN2-01 19 39116716 39116716 G C EIF3K Missense_Mutation p.E110Q 0.40 deleterious(0) probably_damaging(0.968) TCGA-XF-AAN2-01 19 39521925 39521925 C A FBXO27 Missense_Mutation p.D134Y 0.36 deleterious(0.02) probably_damaging(0.951) TCGA-XF-AAN2-01 19 39914197 39914197 G A PLEKHG2 Missense_Mutation p.E835K 0.30 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-XF-AAN2-01 19 40098021 40098021 C G LGALS13 3'UTR 0.36 TCGA-XF-AAN2-01 19 4207244 4207244 G A ANKRD24 Missense_Mutation p.G158S 0.41 tolerated(0.67) probably_damaging(0.934) TCGA-XF-AAN2-01 19 42793997 42793997 C T CIC Intron 0.53 TCGA-XF-AAN2-01 19 44739864 44739864 G A ZNF227 Silent p.Q427Q 0.34 TCGA-XF-AAN2-01 19 46202132 46202132 G A QPCTL Missense_Mutation p.R287H 0.39 deleterious(0.01) benign(0.155) TCGA-XF-AAN2-01 19 46307533 46307533 G A RSPH6A Missense_Mutation p.H544Y 0.40 deleterious(0.01) benign(0.151) TCGA-XF-AAN2-01 19 48789265 48789265 G A ZNF114 Missense_Mutation p.M128I 0.39 tolerated(0.48) benign(0) TCGA-XF-AAN2-01 19 50168100 50168100 C T IRF3 5'UTR 0.26 TCGA-XF-AAN2-01 19 52519104 52519104 G A ZNF614 Missense_Mutation p.P583S 0.33 tolerated_low_confidence(0.17) benign(0.012) TCGA-XF-AAN2-01 19 54081188 54081188 G C ZNF331 Missense_Mutation p.Q458H 0.35 deleterious(0.03) benign(0.057) TCGA-XF-AAN2-01 19 55286732 55286732 G A KIR2DL1 Silent p.R162R 0.68 TCGA-XF-AAN2-01 19 55349087 55349087 G T KIR2DS4 Nonsense_Mutation p.E43* 0.33 TCGA-XF-AAN2-01 19 56953763 56953763 C T ZNF667 Missense_Mutation p.E201K 0.32 tolerated(0.17) benign(0.009) TCGA-XF-AAN2-01 19 57335750 57335750 C G PEG3 Missense_Mutation p.E92Q 0.34 deleterious(0) probably_damaging(0.966) TCGA-XF-AAN2-01 19 6333602 6333602 G C ACER1 5'UTR 0.53 TCGA-XF-AAN2-01 19 7518556 7518556 C A ARHGEF18 Missense_Mutation p.L499M 0.30 tolerated(0.16) probably_damaging(0.962) TCGA-XF-AAN2-01 19 7591392 7591392 G C MCOLN1 Missense_Mutation p.R102P 0.45 deleterious(0) possibly_damaging(0.551) TCGA-XF-AAN2-01 19 7619840 7619840 G A PNPLA6 Missense_Mutation p.R909Q 0.28 deleterious(0.01) possibly_damaging(0.674) TCGA-XF-AAN2-01 19 7808072 7808072 G A CD209 Silent p.C356C 0.33 TCGA-XF-AAN2-01 19 7809086 7809086 G C CD209 Missense_Mutation p.S307C 0.38 deleterious(0) probably_damaging(0.963) TCGA-XF-AAN2-01 19 7810478 7810478 G A CD209 Missense_Mutation p.A225V 0.31 deleterious(0.02) benign(0.012) TCGA-XF-AAN2-01 19 7810602 7810602 G A CD209 Missense_Mutation p.P184S 0.32 tolerated(0.11) possibly_damaging(0.857) TCGA-XF-AAN2-01 19 7810937 7810937 G A CD209 Missense_Mutation p.S72F 0.29 deleterious(0) possibly_damaging(0.864) TCGA-XF-AAN2-01 19 884913 884913 G A MED16 Silent p.I325I 0.39 TCGA-XF-AAN2-01 19 9204840 9204840 G T OR1M1 Missense_Mutation p.R307I 0.32 deleterious(0.05) possibly_damaging(0.653) TCGA-XF-AAN2-01 1 101186098 101186098 C T VCAM1 Missense_Mutation p.S44L 0.18 tolerated(0.29) benign(0.175) TCGA-XF-AAN2-01 1 10713833 10713833 C T CASZ1 Missense_Mutation p.G761R 0.22 tolerated_low_confidence(0.36) benign(0.098) TCGA-XF-AAN2-01 1 10714202 10714202 C T CASZ1 Missense_Mutation p.D638N 0.41 deleterious(0.04) probably_damaging(0.994) TCGA-XF-AAN2-01 1 112524315 112524315 C T KCND3 Missense_Mutation p.G345D 0.58 tolerated(0.32) benign(0.001) TCGA-XF-AAN2-01 1 114454317 114454317 G A DCLRE1B Missense_Mutation p.R368K 0.43 tolerated(0.27) benign(0.003) TCGA-XF-AAN2-01 1 11893574 11893574 C G CLCN6 Silent p.V417V 0.17 TCGA-XF-AAN2-01 1 1266782 1266782 G A TAS1R3 Silent p.T19T 0.27 TCGA-XF-AAN2-01 1 1266858 1266858 G A TAS1R3 Missense_Mutation p.E45K 0.37 tolerated(0.96) benign(0.024) TCGA-XF-AAN2-01 1 1274001 1274001 C T DVL1 Missense_Mutation p.D389N 0.53 deleterious(0.02) probably_damaging(0.981) TCGA-XF-AAN2-01 1 151678705 151678705 C G CELF3 Missense_Mutation p.R374T 0.17 tolerated(0.12) benign(0.05) TCGA-XF-AAN2-01 1 154317616 154317616 T C ATP8B2 Missense_Mutation p.V852A 0.66 deleterious(0) possibly_damaging(0.517) TCGA-XF-AAN2-01 1 155838469 155838469 G C SYT11 Missense_Mutation p.D250H 0.17 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 1 157062784 157062784 G C ETV3L Missense_Mutation p.S248W 0.19 deleterious(0) possibly_damaging(0.55) TCGA-XF-AAN2-01 1 159778937 159778937 G C FCRL6 Missense_Mutation p.G169A 0.11 tolerated(0.95) benign(0.057) TCGA-XF-AAN2-01 1 161130470 161130470 G C USP21 Missense_Mutation p.E14Q 0.24 tolerated_low_confidence(0.2) probably_damaging(0.95) TCGA-XF-AAN2-01 1 162467949 162467949 C T UHMK1 Silent p.L53L 0.19 TCGA-XF-AAN2-01 1 16945485 16945485 C T RP5-1182A14.5 3'Flank 0.08 TCGA-XF-AAN2-01 1 169771854 169771854 G A C1orf112 Silent p.R53R 0.25 TCGA-XF-AAN2-01 1 17084309 17084309 C G MST1L RNA 0.07 TCGA-XF-AAN2-01 1 170952562 170952562 G C MROH9 Splice_Site p.X206_splice 0.22 TCGA-XF-AAN2-01 1 172411277 172411277 G C PIGC Missense_Mutation p.I162M 0.38 tolerated(0.11) benign(0.048) TCGA-XF-AAN2-01 1 176675521 176675521 G C PAPPA2 Missense_Mutation p.G1131A 0.13 tolerated(0.48) benign(0.194) TCGA-XF-AAN2-01 1 179348604 179348604 G C AXDND1 Missense_Mutation p.E190Q 0.21 tolerated(0.15) possibly_damaging(0.727) TCGA-XF-AAN2-01 1 179887207 179887207 G C TOR1AIP1 Missense_Mutation p.E529Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 1 179887380 179887380 G A TOR1AIP1 3'UTR 0.50 TCGA-XF-AAN2-01 1 180166064 180166064 C T QSOX1 Silent p.L712L 0.60 TCGA-XF-AAN2-01 1 181003155 181003155 G A MR1 Silent p.L4L 0.22 TCGA-XF-AAN2-01 1 181741346 181741346 C T CACNA1E Silent p.F1706F 0.44 TCGA-XF-AAN2-01 1 181767826 181767826 C T CACNA1E Silent p.I2266I 0.33 TCGA-XF-AAN2-01 1 193050546 193050546 C G TROVE2 Missense_Mutation p.S380C 0.45 deleterious(0.03) probably_damaging(1) TCGA-XF-AAN2-01 1 19447887 19447887 C T UBR4 Missense_Mutation p.E3313K 0.39 probably_damaging(0.972) TCGA-XF-AAN2-01 1 197704838 197704838 G A DENND1B Intron 0.29 TCGA-XF-AAN2-01 1 201982361 201982361 G A ELF3 Missense_Mutation p.R247Q 0.45 deleterious(0) probably_damaging(0.996) TCGA-XF-AAN2-01 1 203830750 203830750 G A SNRPE 5'UTR 0.34 TCGA-XF-AAN2-01 1 204586919 204586919 C T LRRN2 3'UTR 0.16 TCGA-XF-AAN2-01 1 20474750 20474750 C T PLA2G2F Silent p.L164L 0.47 TCGA-XF-AAN2-01 1 212798273 212798273 G A FAM71A Missense_Mutation p.M18I 0.49 tolerated(0.11) benign(0.012) TCGA-XF-AAN2-01 1 215848734 215848734 C T USH2A Silent p.L4173L 0.16 TCGA-XF-AAN2-01 1 215990453 215990453 T C USH2A Silent p.P3152P 0.04 TCGA-XF-AAN2-01 1 224321828 224321828 G T FBXO28 Missense_Mutation p.A144S 0.54 tolerated(0.23) benign(0.294) TCGA-XF-AAN2-01 1 224378016 224378016 C T DEGS1 Missense_Mutation p.P274S 0.20 deleterious(0) probably_damaging(0.989) TCGA-XF-AAN2-01 1 227170378 227170378 G C ADCK3 Splice_Site p.X285_splice 0.20 TCGA-XF-AAN2-01 1 228476442 228476442 G C OBSCN Missense_Mutation p.E3827Q 0.18 benign(0.179) TCGA-XF-AAN2-01 1 233344291 233344291 G C PCNXL2 Missense_Mutation p.L946V 0.18 tolerated(0.07) benign(0.292) TCGA-XF-AAN2-01 1 236689279 236689279 C G LGALS8 5'UTR 0.14 TCGA-XF-AAN2-01 1 237666723 237666723 G C RYR2 Missense_Mutation p.R844T 0.38 benign(0.02) TCGA-XF-AAN2-01 1 23847564 23847564 C T E2F2 Splice_Site p.X193_splice 0.17 TCGA-XF-AAN2-01 1 241904945 241904945 C G WDR64 Missense_Mutation p.I473M 0.35 tolerated(0.05) benign(0.196) TCGA-XF-AAN2-01 1 247150744 247150744 C A ZNF695 Missense_Mutation p.G358V 0.21 deleterious(0.01) probably_damaging(1) TCGA-XF-AAN2-01 1 247471861 247471861 C G ZNF496 Missense_Mutation p.E308Q 0.20 tolerated(0.08) possibly_damaging(0.611) TCGA-XF-AAN2-01 1 27059264 27059264 C G ARID1A Nonsense_Mutation p.S634* 0.49 TCGA-XF-AAN2-01 1 28907554 28907554 G C TRNAU1AP 3'Flank 0.48 TCGA-XF-AAN2-01 1 29037087 29037087 G A GMEB1 Silent p.K318K 0.49 TCGA-XF-AAN2-01 1 29064063 29064063 C T YTHDF2 Intron 0.48 TCGA-XF-AAN2-01 1 31465320 31465320 G A PUM1 Nonsense_Mutation p.Q359* 0.26 TCGA-XF-AAN2-01 1 35900587 35900587 C T KIAA0319L Missense_Mutation p.E1020K 0.47 deleterious(0) benign(0.341) TCGA-XF-AAN2-01 1 36550832 36550832 G A TEKT2 Silent p.K75K 0.40 TCGA-XF-AAN2-01 1 40981299 40981299 C G EXO5 Silent p.L361L 0.16 TCGA-XF-AAN2-01 1 42041294 42041294 C G HIVEP3 Missense_Mutation p.E1710Q 0.25 possibly_damaging(0.791) TCGA-XF-AAN2-01 1 43392615 43392615 G A SLC2A1 3'UTR 0.24 TCGA-XF-AAN2-01 1 55464937 55464937 G A BSND Missense_Mutation p.M26I 0.47 deleterious(0) possibly_damaging(0.641) TCGA-XF-AAN2-01 1 55595163 55595163 C G USP24 Missense_Mutation p.A1208P 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-XF-AAN2-01 1 63920103 63920103 G C ITGB3BP Missense_Mutation p.I164M 0.17 deleterious(0.01) possibly_damaging(0.88) TCGA-XF-AAN2-01 1 7826645 7826645 G A CAMTA1 3'UTR 0.10 TCGA-XF-AAN2-01 1 85718273 85718273 C T C1orf52 3'UTR 0.39 TCGA-XF-AAN2-01 1 9083072 9083072 G A SLC2A7 Silent p.L72L 0.52 TCGA-XF-AAN2-01 1 92979317 92979317 C G EVI5 Missense_Mutation p.E777Q 0.45 tolerated_low_confidence(0.06) benign(0.176) TCGA-XF-AAN2-01 1 95368702 95368702 G A CNN3 Silent p.N74N 0.12 TCGA-XF-AAN2-01 20 13695424 13695424 C G ESF1 3'UTR 0.55 TCGA-XF-AAN2-01 20 13765791 13765791 G A NDUFAF5 Missense_Mutation p.R26H 0.28 tolerated(0.55) benign(0.001) TCGA-XF-AAN2-01 20 20018015 20018015 G C CRNKL1 Silent p.L777L 0.34 TCGA-XF-AAN2-01 20 2097983 2097983 G C STK35 Missense_Mutation p.E522Q 0.31 tolerated(0.23) benign(0.401) TCGA-XF-AAN2-01 20 2638800 2638800 G A NOP56 Missense_Mutation p.E549K 0.44 deleterious_low_confidence(0.02) benign(0.292) TCGA-XF-AAN2-01 20 31040091 31040091 C G C20orf112 Missense_Mutation p.L346F 0.30 deleterious(0.03) benign(0.099) TCGA-XF-AAN2-01 20 31571699 31571699 C T SUN5 Silent p.G347G 0.35 TCGA-XF-AAN2-01 20 3214842 3214842 C T SLC4A11 Missense_Mutation p.R180Q 0.36 tolerated(0.34) possibly_damaging(0.812) TCGA-XF-AAN2-01 20 43726795 43726795 G C KCNS1 Silent p.L206L 0.20 TCGA-XF-AAN2-01 20 44540126 44540126 G A PLTP 5'UTR 0.43 TCGA-XF-AAN2-01 20 44586517 44586517 G C ZNF335 Silent p.L768L 0.34 TCGA-XF-AAN2-01 20 44986356 44986356 G C SLC35C2 Missense_Mutation p.F59L 0.26 tolerated(1) benign(0) TCGA-XF-AAN2-01 20 50048947 50048947 C G NFATC2 Missense_Mutation p.Q793H 0.30 tolerated(0.11) probably_damaging(0.993) TCGA-XF-AAN2-01 20 6078252 6078252 G A FERMT1 Silent p.L292L 0.37 TCGA-XF-AAN2-01 20 60898905 60898905 C T LAMA5 Missense_Mutation p.E1926K 0.48 benign(0.062) TCGA-XF-AAN2-01 21 34051036 34051036 C T SYNJ1 Missense_Mutation p.D516N 0.26 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 21 42824764 42824764 G A MX1 Missense_Mutation p.E576K 0.25 deleterious(0) benign(0.303) TCGA-XF-AAN2-01 22 21828948 21828948 C T TMEM191C 3'Flank 0.39 TCGA-XF-AAN2-01 22 24658509 24658509 C A POM121L9P RNA 0.50 TCGA-XF-AAN2-01 22 25150141 25150141 G C PIWIL3 Missense_Mutation p.Q273E 0.52 tolerated(0.17) benign(0.005) TCGA-XF-AAN2-01 22 31685334 31685334 C G PIK3IP1 Missense_Mutation p.G185A 0.42 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 22 32156646 32156646 C G DEPDC5 Missense_Mutation p.L51V 0.42 deleterious(0.02) benign(0.076) TCGA-XF-AAN2-01 22 38369569 38369569 G C SOX10 Nonsense_Mutation p.S445* 0.58 TCGA-XF-AAN2-01 22 41551100 41551100 C T EP300 Nonsense_Mutation p.Q1082* 0.64 TCGA-XF-AAN2-01 22 44319842 44319842 C A PNPLA3 Missense_Mutation p.F17L 0.71 deleterious(0.03) possibly_damaging(0.469) TCGA-XF-AAN2-01 22 46652706 46652706 G A PKDREJ Silent p.L2172L 0.58 TCGA-XF-AAN2-01 2 101606888 101606888 C T NPAS2 Silent p.F666F 0.36 TCGA-XF-AAN2-01 2 109336129 109336129 C T RANBP2 Nonsense_Mutation p.R23* 0.20 TCGA-XF-AAN2-01 2 111395467 111395467 G C BUB1 3'UTR 0.30 TCGA-XF-AAN2-01 2 111398939 111398939 C A BUB1 Missense_Mutation p.D910Y 0.43 deleterious(0.01) possibly_damaging(0.905) TCGA-XF-AAN2-01 2 111556604 111556604 C T ACOXL Silent p.F158F 0.38 TCGA-XF-AAN2-01 2 114500233 114500233 C G SLC35F5 Intron 0.35 TCGA-XF-AAN2-01 2 116066898 116066898 C T DPP10 Silent p.L52L 0.29 TCGA-XF-AAN2-01 2 128477643 128477643 G T WDR33 Missense_Mutation p.F652L 0.33 tolerated_low_confidence(0.36) unknown(0) TCGA-XF-AAN2-01 2 12858571 12858571 G A TRIB2 Silent p.P46P 0.50 TCGA-XF-AAN2-01 2 131799445 131799445 C T ARHGEF4 Silent p.I465I 0.33 TCGA-XF-AAN2-01 2 136072926 136072926 C T ZRANB3 Intron 0.34 TCGA-XF-AAN2-01 2 138414422 138414422 G C THSD7B Missense_Mutation p.D1391H 0.42 deleterious(0.01) unknown(0) TCGA-XF-AAN2-01 2 141243003 141243003 C T LRP1B Missense_Mutation p.E3112K 0.64 benign(0.292) TCGA-XF-AAN2-01 2 159195284 159195284 G C CCDC148 Missense_Mutation p.Q240E 0.37 tolerated(0.31) benign(0.388) TCGA-XF-AAN2-01 2 179400910 179400910 G A TTN Missense_Mutation p.H33522Y 0.43 TCGA-XF-AAN2-01 2 179622549 179622549 G A TTN Silent p.S3466S 0.44 TCGA-XF-AAN2-01 2 179641878 179641878 G A TTN Silent p.I1604I 0.33 TCGA-XF-AAN2-01 2 191301976 191301976 G A MFSD6 Silent p.E407E 0.37 TCGA-XF-AAN2-01 2 191919232 191919232 C G STAT4 Missense_Mutation p.G412A 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-XF-AAN2-01 2 196699053 196699053 G T DNAH7 Missense_Mutation p.P2993T 0.25 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 2 197540881 197540881 G C CCDC150 Missense_Mutation p.M384I 0.38 tolerated(0.15) benign(0.053) TCGA-XF-AAN2-01 2 203417517 203417517 G C BMPR2 Missense_Mutation p.E498Q 0.65 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 2 209217435 209217435 C G PIKFYVE Missense_Mutation p.Q1925E 0.62 deleterious(0.02) possibly_damaging(0.632) TCGA-XF-AAN2-01 2 213914550 213914550 T C IKZF2 Missense_Mutation p.N154S 0.56 deleterious(0.05) probably_damaging(0.996) TCGA-XF-AAN2-01 2 216257848 216257848 G C FN1 Missense_Mutation p.S1292C 0.61 tolerated(0.07) probably_damaging(0.981) TCGA-XF-AAN2-01 2 220043729 220043729 C A FAM134A Missense_Mutation p.R123S 0.60 deleterious(0.04) possibly_damaging(0.792) TCGA-XF-AAN2-01 2 220479221 220479221 C T STK11IP Missense_Mutation p.S952F 0.54 deleterious(0.01) probably_damaging(0.994) TCGA-XF-AAN2-01 2 241689927 241689927 G A KIF1A Missense_Mutation p.P966S 0.64 tolerated(0.17) benign(0.046) TCGA-XF-AAN2-01 2 242186541 242186541 G A HDLBP Missense_Mutation p.S583L 0.64 tolerated(0.42) benign(0.209) TCGA-XF-AAN2-01 2 26151777 26151777 G A KIF3C 3'UTR 0.40 TCGA-XF-AAN2-01 2 26332716 26332716 G A RAB10 Missense_Mutation p.D90N 0.36 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 2 39088479 39088479 C T DHX57 Missense_Mutation p.R358Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN2-01 2 40655747 40655747 C T SLC8A1 Silent p.V558V 0.34 TCGA-XF-AAN2-01 2 60689190 60689190 T C BCL11A Missense_Mutation p.E286G 0.24 deleterious(0.03) probably_damaging(0.985) TCGA-XF-AAN2-01 2 74274067 74274067 G C TET3 Missense_Mutation p.Q206H 0.39 deleterious(0.01) possibly_damaging(0.867) TCGA-XF-AAN2-01 2 74474302 74474302 G A SLC4A5 Silent p.F640F 0.35 TCGA-XF-AAN2-01 2 84517923 84517923 C A FUNDC2P2 RNA 0.26 TCGA-XF-AAN2-01 2 86371654 86371654 G C IMMT Missense_Mutation p.Q672E 0.45 tolerated(0.6) benign(0.102) TCGA-XF-AAN2-01 2 89309936 89309936 C T IGKV1-9 Missense_Mutation p.A7T 0.31 tolerated(0.5) benign(0.002) TCGA-XF-AAN2-01 2 89399437 89399437 G A IGKV1-16 Missense_Mutation p.S89F 0.35 deleterious(0.02) benign(0.168) TCGA-XF-AAN2-01 2 96799204 96799204 G A ASTL Nonsense_Mutation p.Q139* 0.31 TCGA-XF-AAN2-01 2 97426942 97426942 C T CNNM4 Missense_Mutation p.S69F 0.22 tolerated(0.61) benign(0.006) TCGA-XF-AAN2-01 2 99778643 99778643 G C LIPT1 Missense_Mutation p.G75R 0.41 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 2 99858936 99858936 G C LYG2 Nonsense_Mutation p.S177* 0.33 TCGA-XF-AAN2-01 2 99860364 99860364 G A LYG2 Intron 0.32 TCGA-XF-AAN2-01 3 10491240 10491240 C T ATP2B2 5'UTR 0.40 TCGA-XF-AAN2-01 3 111604251 111604251 G T PHLDB2 Nonsense_Mutation p.E443* 0.32 TCGA-XF-AAN2-01 3 120114578 120114578 C T FSTL1 3'UTR 0.49 TCGA-XF-AAN2-01 3 12198407 12198407 C T TIMP4 Missense_Mutation p.D89N 0.40 deleterious(0.01) benign(0.074) TCGA-XF-AAN2-01 3 130187926 130187926 G C COL6A5 Missense_Mutation p.D2360H 0.32 deleterious(0) possibly_damaging(0.897) TCGA-XF-AAN2-01 3 132226123 132226123 G A DNAJC13 Missense_Mutation p.D1681N 0.32 tolerated(0.49) benign(0.01) TCGA-XF-AAN2-01 3 132226195 132226195 G C DNAJC13 Missense_Mutation p.E1705Q 0.31 tolerated(0.18) benign(0.041) TCGA-XF-AAN2-01 3 138037058 138037058 C T NME9 Missense_Mutation p.E45K 0.41 tolerated(0.11) probably_damaging(0.983) TCGA-XF-AAN2-01 3 149040056 149040056 G A TM4SF18 Missense_Mutation p.S193L 0.31 deleterious(0.01) probably_damaging(0.946) TCGA-XF-AAN2-01 3 150421735 150421735 C T FAM194A 5'UTR 0.27 TCGA-XF-AAN2-01 3 150421742 150421742 C T FAM194A 5'Flank 0.27 TCGA-XF-AAN2-01 3 154147036 154147036 C T GPR149 Silent p.A123A 0.34 TCGA-XF-AAN2-01 3 158364638 158364638 C A GFM1 Silent p.V158V 0.36 TCGA-XF-AAN2-01 3 16254109 16254109 C A GALNT15 Missense_Mutation p.P411T 0.30 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 3 16254234 16254234 C T GALNT15 Silent p.F452F 0.37 TCGA-XF-AAN2-01 3 16411602 16411602 G A RFTN1 Silent p.F337F 0.37 TCGA-XF-AAN2-01 3 167293719 167293719 G C WDR49 Missense_Mutation p.S158C 0.36 deleterious(0) possibly_damaging(0.838) TCGA-XF-AAN2-01 3 170723895 170723895 C G SLC2A2 Splice_Site p.X205_splice 0.26 TCGA-XF-AAN2-01 3 170828529 170828529 C T TNIK Missense_Mutation p.G753E 0.50 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.31 deleterious(0.04) probably_damaging(0.96) TCGA-XF-AAN2-01 3 183862399 183862399 C T EIF2B5 Silent p.F670F 0.33 TCGA-XF-AAN2-01 3 183885729 183885729 C T DVL3 Silent p.F458F 0.39 TCGA-XF-AAN2-01 3 183885783 183885783 C T DVL3 Silent p.F476F 0.38 TCGA-XF-AAN2-01 3 194991365 194991365 G A XXYLT1 Silent p.F141F 0.44 TCGA-XF-AAN2-01 3 195937533 195937533 G A ZDHHC19 Silent p.F74F 0.31 TCGA-XF-AAN2-01 3 196089367 196089367 C T UBXN7 Silent p.E342E 0.32 TCGA-XF-AAN2-01 3 197672512 197672512 C T IQCG 5'UTR 0.37 TCGA-XF-AAN2-01 3 25820067 25820067 C A NGLY1 Nonsense_Mutation p.E82* 0.40 TCGA-XF-AAN2-01 3 36527655 36527655 G A STAC Missense_Mutation p.E201K 0.34 deleterious(0) possibly_damaging(0.86) TCGA-XF-AAN2-01 3 36898549 36898549 G C TRANK1 Silent p.L844L 0.42 TCGA-XF-AAN2-01 3 38793964 38793964 G A SCN10A Missense_Mutation p.H501Y 0.45 tolerated(0.17) benign(0.029) TCGA-XF-AAN2-01 3 39178544 39178544 G A TTC21A Missense_Mutation p.E1091K 0.34 tolerated(0.46) benign(0.02) TCGA-XF-AAN2-01 3 44776745 44776745 G C ZNF501 3'UTR 0.38 TCGA-XF-AAN2-01 3 47951694 47951694 G A MAP4 Intron 0.34 TCGA-XF-AAN2-01 3 48642088 48642088 C T UQCRC1 Silent p.P141P 0.42 TCGA-XF-AAN2-01 3 49011238 49011238 C - ARIH2 Frame_Shift_Del p.H293Tfs*35 0.18 TCGA-XF-AAN2-01 3 52011891 52011891 T C ABHD14A Missense_Mutation p.V25A 0.38 tolerated_low_confidence(0.11) benign(0.001) TCGA-XF-AAN2-01 3 52236745 52236745 G - ALAS1 Frame_Shift_Del p.E143Rfs*14 0.24 TCGA-XF-AAN2-01 3 52555955 52555955 C T STAB1 Missense_Mutation p.R2087C 0.23 tolerated(0.07) possibly_damaging(0.582) TCGA-XF-AAN2-01 3 52799959 52799959 G A NEK4 Missense_Mutation p.H204Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 3 52852289 52852289 C T ITIH4 Missense_Mutation p.M721I 0.25 tolerated(0.27) benign(0) TCGA-XF-AAN2-01 3 57898358 57898358 G C SLMAP Silent p.L616L 0.38 TCGA-XF-AAN2-01 3 64601703 64601703 G T ADAMTS9 Missense_Mutation p.P986Q 0.41 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 3 68802032 68802032 G C FAM19A4 Missense_Mutation p.Q90E 0.31 deleterious(0.04) benign(0.036) TCGA-XF-AAN2-01 3 89521651 89521651 A T EPHA3 Missense_Mutation p.I910F 0.42 tolerated(1) benign(0.01) TCGA-XF-AAN2-01 3 99881159 99881159 G A CMSS1 Missense_Mutation p.D80N 0.40 deleterious(0) probably_damaging(0.99) TCGA-XF-AAN2-01 4 100350703 100350703 C T ADH7 Missense_Mutation p.E56K 0.37 deleterious(0.02) possibly_damaging(0.898) TCGA-XF-AAN2-01 4 110932475 110932475 G A EGF Missense_Mutation p.R1163Q 0.35 tolerated_low_confidence(0.39) benign(0) TCGA-XF-AAN2-01 4 122800972 122800972 C G TRPC3 Missense_Mutation p.K895N 0.26 tolerated(0.05) possibly_damaging(0.756) TCGA-XF-AAN2-01 4 125590361 125590361 C G ANKRD50 Missense_Mutation p.K1357N 0.26 deleterious(0.04) benign(0.001) TCGA-XF-AAN2-01 4 142654029 142654029 C G IL15 3'UTR 0.22 TCGA-XF-AAN2-01 4 153249370 153249370 G A FBXW7 Missense_Mutation p.H470Y 0.30 tolerated(0.31) benign(0.111) TCGA-XF-AAN2-01 4 153897386 153897386 C G FHDC1 Missense_Mutation p.F981L 0.26 tolerated(1) benign(0) TCGA-XF-AAN2-01 4 154709787 154709787 C G SFRP2 Missense_Mutation p.E67D 0.31 tolerated(0.45) possibly_damaging(0.713) TCGA-XF-AAN2-01 4 155505852 155505852 G C FGA Missense_Mutation p.I675M 0.32 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN2-01 4 169630220 169630220 G A PALLD Missense_Mutation p.D515N 0.30 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN2-01 4 186997957 186997957 C G TLR3 Missense_Mutation p.Q62E 0.24 deleterious(0.04) benign(0.038) TCGA-XF-AAN2-01 4 2210146 2210146 G C POLN Silent p.V94V 0.46 TCGA-XF-AAN2-01 4 24801411 24801411 C T SOD3 Missense_Mutation p.R90C 0.42 tolerated(0.06) possibly_damaging(0.717) TCGA-XF-AAN2-01 4 4303794 4303794 G A ZBTB49 Silent p.Q77Q 0.41 TCGA-XF-AAN2-01 4 48502189 48502189 C T FRYL Missense_Mutation p.E2881K 0.26 tolerated(0.3) benign(0.14) TCGA-XF-AAN2-01 4 68691546 68691546 A G TMPRSS11D Silent p.S333S 0.40 TCGA-XF-AAN2-01 4 69978565 69978565 A G UGT2B7 3'UTR 0.25 TCGA-XF-AAN2-01 4 71508608 71508608 G T ENAM Missense_Mutation p.D489Y 0.31 deleterious(0) probably_damaging(0.986) TCGA-XF-AAN2-01 4 87028487 87028487 G A MAPK10 Silent p.V85V 0.32 TCGA-XF-AAN2-01 5 112102988 112102988 G C APC Missense_Mutation p.G108A 0.39 benign(0.059) TCGA-XF-AAN2-01 5 112363149 112363149 C G MCC Missense_Mutation p.K970N 0.40 deleterious(0.05) probably_damaging(0.985) TCGA-XF-AAN2-01 5 124080087 124080087 C A ZNF608 Missense_Mutation p.R199L 0.31 tolerated(0.4) probably_damaging(0.994) TCGA-XF-AAN2-01 5 133942505 133942505 G C SAR1B 3'UTR 0.33 TCGA-XF-AAN2-01 5 137727353 137727353 C T KDM3B Missense_Mutation p.H678Y 0.34 tolerated_low_confidence(1) benign(0.024) TCGA-XF-AAN2-01 5 13839557 13839557 C T DNAH5 Silent p.K1930K 0.32 TCGA-XF-AAN2-01 5 140056626 140056626 C G HARS Missense_Mutation p.G300A 0.38 tolerated(0.52) benign(0.001) TCGA-XF-AAN2-01 5 140256594 140256594 G A PCDHA12 Missense_Mutation p.E513K 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.774) TCGA-XF-AAN2-01 5 140755099 140755099 G A PCDHGA6 Silent p.Q483Q 0.37 TCGA-XF-AAN2-01 5 140801036 140801036 G A PCDHGA11 Missense_Mutation p.R81Q 0.37 deleterious_low_confidence(0.04) benign(0.257) TCGA-XF-AAN2-01 5 145969708 145969708 C T PPP2R2B Silent p.S381S 0.38 TCGA-XF-AAN2-01 5 146997502 146997502 C G JAKMIP2 Missense_Mutation p.R773T 0.47 deleterious(0) probably_damaging(0.962) TCGA-XF-AAN2-01 5 157158483 157158483 C G THG1L Missense_Mutation p.S12C 0.31 tolerated_low_confidence(0.72) benign(0) TCGA-XF-AAN2-01 5 167855779 167855779 C T WWC1 Nonsense_Mutation p.Q663* 0.40 TCGA-XF-AAN2-01 5 169143252 169143252 C T DOCK2 Silent p.I659I 0.27 TCGA-XF-AAN2-01 5 176562542 176562542 C T NSD1 Silent p.I146I 0.40 TCGA-XF-AAN2-01 5 176832052 176832052 C T F12 Intron 0.39 TCGA-XF-AAN2-01 5 176887463 176887463 C A DBN1 Missense_Mutation p.D311Y 0.40 deleterious(0) possibly_damaging(0.786) TCGA-XF-AAN2-01 5 179555520 179555520 C A RASGEF1C Missense_Mutation p.D177Y 0.37 deleterious(0) probably_damaging(0.95) TCGA-XF-AAN2-01 5 35003955 35003955 C T AGXT2 Silent p.R450R 0.40 TCGA-XF-AAN2-01 5 53409135 53409135 C G ARL15 Missense_Mutation p.R120T 0.34 deleterious(0) possibly_damaging(0.826) TCGA-XF-AAN2-01 5 55195898 55195898 C A IL31RA Missense_Mutation p.S336Y 0.37 tolerated(0.13) benign(0.094) TCGA-XF-AAN2-01 5 7789816 7789816 A G ADCY2 Missense_Mutation p.E844G 0.45 deleterious(0.01) possibly_damaging(0.74) TCGA-XF-AAN2-01 5 79028228 79028228 C T CMYA5 Nonsense_Mutation p.Q1214* 0.33 TCGA-XF-AAN2-01 5 79355285 79355285 G A THBS4 Missense_Mutation p.R252Q 0.36 deleterious(0) probably_damaging(0.99) TCGA-XF-AAN2-01 5 87564640 87564640 G A TMEM161B 5'UTR 0.32 TCGA-XF-AAN2-01 6 108041859 108041859 G A SCML4 Intron 0.04 TCGA-XF-AAN2-01 6 111694547 111694547 G A REV3L Nonsense_Mutation p.Q1671* 0.34 TCGA-XF-AAN2-01 6 131191231 131191231 C G EPB41L2 Missense_Mutation p.K693N 0.30 tolerated(0.07) probably_damaging(0.977) TCGA-XF-AAN2-01 6 132031178 132031178 G C CTAGE9 Missense_Mutation p.S327C 0.17 tolerated(0.24) probably_damaging(0.978) TCGA-XF-AAN2-01 6 13599382 13599382 C G SIRT5 Missense_Mutation p.L246V 0.32 deleterious(0.01) benign(0.295) TCGA-XF-AAN2-01 6 136710649 136710649 C G MAP7 Missense_Mutation p.R106T 0.33 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN2-01 6 139202233 139202233 C T ECT2L Missense_Mutation p.S602L 0.38 deleterious(0) probably_damaging(0.914) TCGA-XF-AAN2-01 6 147636838 147636838 C T STXBP5 Silent p.F530F 0.39 TCGA-XF-AAN2-01 6 149795653 149795653 G A ZC3H12D Silent p.F9F 0.35 TCGA-XF-AAN2-01 6 150004798 150004798 G A LATS1 Missense_Mutation p.S476F 0.34 deleterious_low_confidence(0.02) benign(0.309) TCGA-XF-AAN2-01 6 150004840 150004840 G C LATS1 Nonsense_Mutation p.S462* 0.33 TCGA-XF-AAN2-01 6 160163119 160163119 G C WTAP Splice_Site p.X29_splice 0.31 TCGA-XF-AAN2-01 6 20781488 20781488 C T CDKAL1 Silent p.I210I 0.31 TCGA-XF-AAN2-01 6 26156588 26156588 C G HIST1H1E 5'UTR 0.36 TCGA-XF-AAN2-01 6 26598303 26598303 C T ABT1 Missense_Mutation p.R135C 0.41 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 6 28879489 28879489 C T TRIM27 Missense_Mutation p.G252R 0.32 tolerated(0.6) probably_damaging(0.979) TCGA-XF-AAN2-01 6 30040942 30040942 C T RNF39 Missense_Mutation p.R225K 0.38 tolerated(0.36) benign(0.157) TCGA-XF-AAN2-01 6 31079144 31079144 C T C6orf15 3'UTR 0.37 TCGA-XF-AAN2-01 6 3119674 3119674 G A BPHL Intron 0.41 TCGA-XF-AAN2-01 6 31324681 31324681 C T HLA-B Missense_Mutation p.E43K 0.36 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-XF-AAN2-01 6 31541102 31541102 G A LTA Missense_Mutation p.D84N 0.35 tolerated(0.54) probably_damaging(1) TCGA-XF-AAN2-01 6 3154828 3154828 C T TUBB2A Missense_Mutation p.D203N 0.33 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-XF-AAN2-01 6 31548475 31548475 C A LTB 3'UTR 0.27 TCGA-XF-AAN2-01 6 31852419 31852419 C T EHMT2 Intron 0.37 TCGA-XF-AAN2-01 6 31921542 31921542 C G NELFE Missense_Mutation p.D337H 0.33 deleterious(0.01) unknown(0) TCGA-XF-AAN2-01 6 31921883 31921883 C T NELFE Missense_Mutation p.E306K 0.23 deleterious(0.03) unknown(0) TCGA-XF-AAN2-01 6 31922575 31922575 C G NELFE Missense_Mutation p.D167H 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.85) TCGA-XF-AAN2-01 6 32151075 32151075 C T AGER Intron 0.35 TCGA-XF-AAN2-01 6 32944218 32944218 C A BRD2 Missense_Mutation p.P268T 0.42 tolerated(0.11) benign(0.134) TCGA-XF-AAN2-01 6 34214471 34214471 G C C6orf1 Silent p.L100L 0.37 TCGA-XF-AAN2-01 6 35856666 35856666 G A SRPK1 Silent p.F76F 0.39 TCGA-XF-AAN2-01 6 36455075 36455075 C G KCTD20 3'UTR 0.39 TCGA-XF-AAN2-01 6 37247217 37247217 C G TBC1D22B Missense_Mutation p.S84C 0.37 deleterious(0.01) possibly_damaging(0.682) TCGA-XF-AAN2-01 6 41036642 41036642 C G OARD1 Missense_Mutation p.K98N 0.38 tolerated(0.23) benign(0.212) TCGA-XF-AAN2-01 6 42975000 42975000 G A PPP2R5D Missense_Mutation p.E197K 0.33 deleterious(0) probably_damaging(0.986) TCGA-XF-AAN2-01 6 76412774 76412774 C G SENP6 Missense_Mutation p.S901C 0.36 deleterious(0.03) possibly_damaging(0.681) TCGA-XF-AAN2-01 6 82924503 82924503 C G IBTK Missense_Mutation p.E549Q 0.33 tolerated(0.31) benign(0.011) TCGA-XF-AAN2-01 6 83074928 83074928 G A TPBG Missense_Mutation p.E84K 0.46 tolerated(0.59) benign(0.021) TCGA-XF-AAN2-01 6 83843985 83843985 C T DOPEY1 Missense_Mutation p.S950F 0.34 deleterious(0.03) benign(0.005) TCGA-XF-AAN2-01 6 96034700 96034700 G C MANEA Missense_Mutation p.E129Q 0.37 deleterious(0.01) benign(0.01) TCGA-XF-AAN2-01 7 100608667 100608667 C G MUC3A Intron 0.22 TCGA-XF-AAN2-01 7 100866959 100866959 G C ZNHIT1 Missense_Mutation p.L93F 0.33 tolerated(0.66) possibly_damaging(0.68) TCGA-XF-AAN2-01 7 100866969 100866969 G A ZNHIT1 Missense_Mutation p.E97K 0.33 tolerated(0.36) benign(0.001) TCGA-XF-AAN2-01 7 104750987 104750987 C G KMT2E Nonsense_Mutation p.S1303* 0.37 TCGA-XF-AAN2-01 7 106841924 106841924 C G HBP1 3'UTR 0.38 TCGA-XF-AAN2-01 7 107880462 107880462 C T NRCAM Missense_Mutation p.R16K 0.32 tolerated(1) benign(0.04) TCGA-XF-AAN2-01 7 113518601 113518601 G T PPP1R3A Nonsense_Mutation p.S849* 0.39 TCGA-XF-AAN2-01 7 117282538 117282538 C T CFTR Missense_Mutation p.S1255L 0.32 tolerated(1) benign(0.001) TCGA-XF-AAN2-01 7 139801781 139801781 G C KDM7A Silent p.L536L 0.29 TCGA-XF-AAN2-01 7 149508800 149508800 C T SSPO RNA 0.35 TCGA-XF-AAN2-01 7 17378759 17378759 G C AHR Missense_Mutation p.G437A 0.34 tolerated(0.5) benign(0.003) TCGA-XF-AAN2-01 7 17378976 17378976 G A AHR Silent p.L509L 0.30 TCGA-XF-AAN2-01 7 17378992 17378992 G T AHR Missense_Mutation p.D515Y 0.29 deleterious(0.02) benign(0.243) TCGA-XF-AAN2-01 7 17379517 17379517 G A AHR Missense_Mutation p.E690K 0.36 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-XF-AAN2-01 7 22769210 22769210 G C IL6 Missense_Mutation p.E134D 0.44 tolerated(0.39) benign(0.051) TCGA-XF-AAN2-01 7 24901270 24901270 G A OSBPL3 Missense_Mutation p.S330F 0.37 deleterious(0.01) possibly_damaging(0.62) TCGA-XF-AAN2-01 7 2883515 2883515 C T GNA12 Missense_Mutation p.R94H 0.41 deleterious(0.04) probably_damaging(0.959) TCGA-XF-AAN2-01 7 30087528 30087528 G C PLEKHA8 Missense_Mutation p.D132H 0.42 tolerated(0.81) benign(0.003) TCGA-XF-AAN2-01 7 30649204 30649204 G C GARS Missense_Mutation p.D247H 0.34 deleterious(0) possibly_damaging(0.846) TCGA-XF-AAN2-01 7 4823978 4823978 G A AP5Z1 Missense_Mutation p.E256K 0.37 tolerated(0.77) benign(0.005) TCGA-XF-AAN2-01 7 51098524 51098524 C T COBL Missense_Mutation p.D497N 0.29 deleterious(0.01) possibly_damaging(0.894) TCGA-XF-AAN2-01 7 53103863 53103863 C T POM121L12 Nonsense_Mutation p.Q167* 0.49 TCGA-XF-AAN2-01 7 5336708 5336708 G A SLC29A4 Missense_Mutation p.R254H 0.30 tolerated(0.11) benign(0.048) TCGA-XF-AAN2-01 7 5529058 5529058 G C FBXL18 Intron 0.39 TCGA-XF-AAN2-01 7 5642908 5642908 C G FSCN1 Missense_Mutation p.Q285E 0.37 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN2-01 7 6777425 6777425 C G PMS2CL RNA 0.39 TCGA-XF-AAN2-01 7 81589093 81589093 C T CACNA2D1 Missense_Mutation p.E1007K 0.27 deleterious(0.01) benign(0.108) TCGA-XF-AAN2-01 7 87912158 87912158 G A STEAP4 Missense_Mutation p.P261L 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 7 91667747 91667747 G C AKAP9 Missense_Mutation p.M1451I 0.30 probably_damaging(0.993) TCGA-XF-AAN2-01 7 91972508 91972508 G A ANKIB1 Missense_Mutation p.E320K 0.32 tolerated(0.16) benign(0.021) TCGA-XF-AAN2-01 7 93063567 93063567 C G CALCR Missense_Mutation p.E431Q 0.41 deleterious(0.02) benign(0.336) TCGA-XF-AAN2-01 7 94173797 94173797 A G CASD1 Silent p.S477S 0.32 TCGA-XF-AAN2-01 7 95761052 95761052 C T SLC25A13 Intron 0.33 TCGA-XF-AAN2-01 7 99506363 99506363 C G TRIM4 Missense_Mutation p.E214Q 0.30 deleterious(0) possibly_damaging(0.862) TCGA-XF-AAN2-01 8 101586084 101586084 G C SNX31 3'UTR 0.51 TCGA-XF-AAN2-01 8 117866528 117866528 A G RAD21 Missense_Mutation p.F373L 0.36 tolerated(0.36) benign(0.375) TCGA-XF-AAN2-01 8 124408588 124408588 G A ATAD2 Missense_Mutation p.L4F 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-XF-AAN2-01 8 126093934 126093934 C T KIAA0196 Missense_Mutation p.E163K 0.46 deleterious(0) possibly_damaging(0.707) TCGA-XF-AAN2-01 8 142441222 142441222 C T PTP4A3 3'UTR 0.29 TCGA-XF-AAN2-01 8 144994629 144994629 C T PLEC Silent p.L3257L 0.25 TCGA-XF-AAN2-01 8 145058709 145058709 C T PARP10 Intron 0.40 TCGA-XF-AAN2-01 8 18729698 18729698 G C PSD3 Missense_Mutation p.Q226E 0.56 deleterious_low_confidence(0.02) benign(0.263) TCGA-XF-AAN2-01 8 18730069 18730069 G C PSD3 Missense_Mutation p.S102C 0.53 tolerated_low_confidence(0.05) benign(0.009) TCGA-XF-AAN2-01 8 21552023 21552023 C T GFRA2 Missense_Mutation p.G409R 0.23 tolerated(0.31) possibly_damaging(0.793) TCGA-XF-AAN2-01 8 22006323 22006323 C G LGI3 Missense_Mutation p.E333Q 0.69 deleterious(0) probably_damaging(0.961) TCGA-XF-AAN2-01 8 30210560 30210560 C T TUBBP1 RNA 0.50 TCGA-XF-AAN2-01 8 41791399 41791399 C T KAT6A Missense_Mutation p.E1447K 0.58 unknown(0) TCGA-XF-AAN2-01 8 53025874 53025874 C T ST18 Missense_Mutation p.E1010K 0.35 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN2-01 8 53570023 53570023 C T RB1CC1 Missense_Mutation p.G789E 0.43 tolerated_low_confidence(0.08) probably_damaging(1) TCGA-XF-AAN2-01 8 55534023 55534023 C T RP1 Missense_Mutation p.T166M 0.41 tolerated(0.19) benign(0.097) TCGA-XF-AAN2-01 8 61655219 61655219 C T CHD7 Missense_Mutation p.P410S 0.24 possibly_damaging(0.641) TCGA-XF-AAN2-01 8 9413781 9413781 C T TNKS Missense_Mutation p.S111L 0.54 tolerated_low_confidence(0.06) unknown(0) TCGA-XF-AAN2-01 8 95774052 95774052 A T DPY19L4 Missense_Mutation p.Q287L 0.49 deleterious(0.01) benign(0.16) TCGA-XF-AAN2-01 8 99786971 99786971 C T STK3 Missense_Mutation p.E63K 0.33 tolerated(0.07) possibly_damaging(0.777) TCGA-XF-AAN2-01 9 107591232 107591232 G A ABCA1 Missense_Mutation p.L694F 0.38 tolerated(0.05) possibly_damaging(0.737) TCGA-XF-AAN2-01 9 114148709 114148709 G - KIAA0368 Frame_Shift_Del p.Q1337Kfs*20 0.23 TCGA-XF-AAN2-01 9 115805223 115805223 G A ZFP37 Missense_Mutation p.H559Y 0.39 tolerated(0.08) probably_damaging(0.98) TCGA-XF-AAN2-01 9 119460715 119460715 G A TRIM32 Missense_Mutation p.E232K 0.38 deleterious(0.03) benign(0.09) TCGA-XF-AAN2-01 9 134165483 134165483 G A PPAPDC3 Silent p.P33P 0.36 TCGA-XF-AAN2-01 9 135042134 135042134 C G NTNG2 5'UTR 0.42 TCGA-XF-AAN2-01 9 138387244 138387244 G C C9orf116 3'UTR 0.33 TCGA-XF-AAN2-01 9 139379442 139379442 G C C9orf163 Missense_Mutation p.R181T 0.39 deleterious_low_confidence(0) benign(0.402) TCGA-XF-AAN2-01 9 139410068 139410068 G C NOTCH1 Silent p.L590L 0.25 TCGA-XF-AAN2-01 9 139836610 139836610 G A FBXW5 Silent p.A328A 0.18 TCGA-XF-AAN2-01 9 19371941 19371941 C G DENND4C Intron 0.33 TCGA-XF-AAN2-01 9 27524545 27524545 G A IFNK Missense_Mutation p.E71K 0.36 deleterious(0.04) probably_damaging(0.989) TCGA-XF-AAN2-01 9 36236873 36236873 G A GNE Missense_Mutation p.S273L 0.41 tolerated(0.07) benign(0.218) TCGA-XF-AAN2-01 9 37745139 37745139 C T FRMPD1 Missense_Mutation p.S1037F 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.553) TCGA-XF-AAN2-01 9 5742887 5742887 G T KIAA1432 Missense_Mutation p.G307V 0.36 deleterious(0) probably_damaging(1) TCGA-XF-AAN2-01 9 95618147 95618147 C A ZNF484 Nonsense_Mutation p.E63* 0.43 TCGA-XF-AAN2-01 X 100808511 100808511 G A ARMCX1 Missense_Mutation p.D200N 0.74 tolerated(0.05) probably_damaging(0.997) TCGA-XF-AAN2-01 X 107423779 107423779 C A COL4A6 Silent p.G700G 0.78 TCGA-XF-AAN2-01 X 109416667 109416667 G C TMEM164 Missense_Mutation p.K294N 0.75 deleterious_low_confidence(0) benign(0.416) TCGA-XF-AAN2-01 X 110951458 110951458 C T ALG13 Missense_Mutation p.P196L 0.12 tolerated_low_confidence(0.46) benign(0) TCGA-XF-AAN2-01 X 129058886 129058886 G A UTP14A Silent p.Q488Q 0.72 TCGA-XF-AAN2-01 X 134156536 134156536 C T FAM127C 5'UTR 0.78 TCGA-XF-AAN2-01 X 135430771 135430771 G A GPR112 Missense_Mutation p.A1636T 0.78 tolerated(0.05) benign(0) TCGA-XF-AAN2-01 X 135593382 135593382 G A HTATSF1 Missense_Mutation p.G493E 0.80 tolerated_low_confidence(1) benign(0.005) TCGA-XF-AAN2-01 X 148627071 148627071 G C CXorf40A Intron 0.69 TCGA-XF-AAN2-01 X 153580035 153580035 C A FLNA Nonsense_Mutation p.E2313* 0.68 TCGA-XF-AAN2-01 X 16887315 16887315 G C RBBP7 Silent p.V59V 0.75 TCGA-XF-AAN2-01 X 19086862 19086862 G A GPR64 Missense_Mutation p.H31Y 0.80 deleterious_low_confidence(0) benign(0.192) TCGA-XF-AAN2-01 X 299415 299415 C A PPP2R3B Missense_Mutation p.D501Y 0.80 deleterious(0) probably_damaging(0.954) TCGA-XF-AAN2-01 X 44970638 44970639 - C KDM6A Frame_Shift_Ins p.S1398Ifs*12 0.47 TCGA-XF-AAN2-01 X 51488598 51488598 G C GSPT2 Missense_Mutation p.E626Q 0.82 deleterious(0.02) possibly_damaging(0.67) TCGA-XF-AAN2-01 X 53564591 53564591 G C HUWE1 Silent p.V4021V 0.75 TCGA-XF-AAN2-01 X 73045181 73045181 G C XIST RNA 0.70 TCGA-XF-AAN2-01 X 77301812 77301812 G A ATP7A Silent p.E1416E 0.70 TCGA-XF-AAN2-01 X 83372137 83372137 G C RPS6KA6 Missense_Mutation p.Q294E 0.66 tolerated(0.17) benign(0.091) TCGA-XF-AAN3-01 10 100152696 100152696 C T PYROXD2 Intron 0.22 TCGA-XF-AAN3-01 10 118451883 118451883 G A HSPA12A Silent p.F214F 0.25 TCGA-XF-AAN3-01 10 135101642 135101642 G A TUBGCP2 Silent p.D599D 0.27 TCGA-XF-AAN3-01 10 14995989 14995989 C T DCLRE1C Silent p.Q7Q 0.21 TCGA-XF-AAN3-01 10 21806533 21806533 G A SKIDA1 Silent p.I73I 0.44 TCGA-XF-AAN3-01 10 26781309 26781309 G C APBB1IP Missense_Mutation p.E18D 0.25 deleterious(0.03) probably_damaging(0.98) TCGA-XF-AAN3-01 10 50732714 50732714 C T ERCC6-PGBD3 Silent p.Q254Q 0.24 TCGA-XF-AAN3-01 10 50945875 50945875 C T OGDHL Silent p.L849L 0.25 TCGA-XF-AAN3-01 11 120096466 120096466 G C OAF Missense_Mutation p.E110Q 0.33 deleterious(0.01) probably_damaging(0.946) TCGA-XF-AAN3-01 11 125889610 125889610 T C CDON Missense_Mutation p.K134E 0.36 deleterious(0.03) benign(0.142) TCGA-XF-AAN3-01 11 36680736 36680736 A T C11orf74 Nonstop_Mutation p.*222Cext*18 0.18 TCGA-XF-AAN3-01 11 47315469 47315469 G A MADD Missense_Mutation p.E1151K 0.22 deleterious(0.03) possibly_damaging(0.593) TCGA-XF-AAN3-01 11 49598223 49598223 C G RP11-707M1.1 RNA 0.32 TCGA-XF-AAN3-01 11 5021112 5021112 G T OR51L1 Missense_Mutation p.Q300H 0.31 tolerated(0.14) probably_damaging(0.99) TCGA-XF-AAN3-01 11 51411569 51411569 G A OR4A5 Missense_Mutation p.T276I 0.20 deleterious_low_confidence(0.01) benign(0.367) TCGA-XF-AAN3-01 11 5906312 5906312 C G OR52E4 Missense_Mutation p.R264G 0.26 deleterious(0) possibly_damaging(0.498) TCGA-XF-AAN3-01 11 59211279 59211279 C T OR5A1 Missense_Mutation p.S213L 0.33 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 11 70507734 70507734 C G SHANK2 Missense_Mutation p.E636Q 0.36 deleterious(0.02) probably_damaging(0.947) TCGA-XF-AAN3-01 11 73748741 73748741 T A C2CD3 Missense_Mutation p.K1888M 0.25 deleterious(0) possibly_damaging(0.905) TCGA-XF-AAN3-01 12 100657615 100657615 G C DEPDC4 Missense_Mutation p.Q72E 0.04 deleterious(0.01) benign(0.164) TCGA-XF-AAN3-01 12 104341509 104341509 G C HSP90B1 3'UTR 0.23 TCGA-XF-AAN3-01 12 119617107 119617107 G A HSPB8 5'UTR 0.41 TCGA-XF-AAN3-01 12 133257861 133257861 C G POLE Missense_Mutation p.D23H 0.24 deleterious(0.01) benign(0.227) TCGA-XF-AAN3-01 12 14614029 14614029 C G ATF7IP Missense_Mutation p.S920C 0.05 deleterious_low_confidence(0) unknown(0) TCGA-XF-AAN3-01 12 14943498 14943498 G A WBP11 Nonsense_Mutation p.Q401* 0.30 TCGA-XF-AAN3-01 12 26568407 26568407 C G ITPR2 Missense_Mutation p.E2379Q 0.22 deleterious(0) possibly_damaging(0.688) TCGA-XF-AAN3-01 12 26647208 26647208 C G ITPR2 Missense_Mutation p.D1750H 0.29 deleterious(0) possibly_damaging(0.873) TCGA-XF-AAN3-01 12 2931957 2931957 C G ITFG2 Intron 0.18 TCGA-XF-AAN3-01 12 29604346 29604346 C T OVCH1 Missense_Mutation p.G896E 0.18 tolerated(1) benign(0.015) TCGA-XF-AAN3-01 12 41386995 41386995 C T CNTN1 Silent p.F679F 0.34 TCGA-XF-AAN3-01 12 46320993 46320993 G C SCAF11 Missense_Mutation p.Q831E 0.35 deleterious(0.02) benign(0.055) TCGA-XF-AAN3-01 12 48543105 48543105 C A ASB8 3'UTR 0.22 TCGA-XF-AAN3-01 12 56216927 56216927 G T DNAJC14 Missense_Mutation p.L521M 0.30 deleterious(0.01) possibly_damaging(0.839) TCGA-XF-AAN3-01 12 57008938 57008938 C T BAZ2A Missense_Mutation p.S199N 0.22 tolerated(0.27) probably_damaging(0.977) TCGA-XF-AAN3-01 12 76462743 76462743 C G NAP1L1 Missense_Mutation p.D17H 0.17 deleterious(0.03) benign(0.308) TCGA-XF-AAN3-01 12 8084001 8084001 A G SLC2A3 Missense_Mutation p.V117A 0.30 tolerated(0.08) benign(0.05) TCGA-XF-AAN3-01 12 8759524 8759524 G A AICDA Silent p.Y31Y 0.33 TCGA-XF-AAN3-01 13 32912444 32912444 G A BRCA2 Missense_Mutation p.E1318K 0.06 tolerated(0.31) possibly_damaging(0.508) TCGA-XF-AAN3-01 14 102492964 102492964 G A DYNC1H1 Silent p.L2897L 0.34 TCGA-XF-AAN3-01 14 102493544 102493544 G C DYNC1H1 Silent p.L2935L 0.30 TCGA-XF-AAN3-01 14 102496188 102496188 G C DYNC1H1 Missense_Mutation p.K3225N 0.37 probably_damaging(0.998) TCGA-XF-AAN3-01 14 105411002 105411002 C T AHNAK2 Missense_Mutation p.D3596N 0.15 benign(0.002) TCGA-XF-AAN3-01 14 105944793 105944793 G T CRIP2 Missense_Mutation p.G123W 0.31 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 14 21826511 21826511 C T SUPT16H Missense_Mutation p.E793K 0.22 tolerated(0.54) benign(0.018) TCGA-XF-AAN3-01 14 45658269 45658269 G C FANCM Missense_Mutation p.D1682H 0.05 deleterious(0.01) possibly_damaging(0.907) TCGA-XF-AAN3-01 14 67779322 67779322 C T MPP5 Nonsense_Mutation p.Q374* 0.24 TCGA-XF-AAN3-01 14 94964457 94964457 C T SERPINA12 Missense_Mutation p.S93N 0.16 tolerated(0.09) benign(0.315) TCGA-XF-AAN3-01 15 25230278 25230278 G A SNORD64 RNA 0.22 TCGA-XF-AAN3-01 15 33895328 33895328 C T RYR3 Missense_Mutation p.R643W 0.27 probably_damaging(0.999) TCGA-XF-AAN3-01 15 34109136 34109136 G A RYR3 Missense_Mutation p.E3526K 0.25 benign(0.283) TCGA-XF-AAN3-01 15 40916690 40916690 C G CASC5 Missense_Mutation p.L1436V 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-XF-AAN3-01 15 40916715 40916715 C T CASC5 Missense_Mutation p.S1444L 0.22 tolerated(0.15) benign(0.149) TCGA-XF-AAN3-01 15 42503801 42503801 G C TMEM87A 3'UTR 0.20 TCGA-XF-AAN3-01 15 42651856 42651856 G C CAPN3 5'UTR 0.58 TCGA-XF-AAN3-01 16 21218205 21218205 G A ZP2 Missense_Mutation p.T146I 0.35 tolerated(0.54) benign(0.009) TCGA-XF-AAN3-01 16 31226446 31226446 C T TRIM72 Silent p.L129L 0.17 TCGA-XF-AAN3-01 16 48221240 48221240 G A ABCC11 Silent p.P935P 0.31 TCGA-XF-AAN3-01 16 55801406 55801406 G C CES1P1 RNA 0.05 TCGA-XF-AAN3-01 16 56871558 56871558 G C NUP93 Silent p.L646L 0.33 TCGA-XF-AAN3-01 16 67697147 67697147 C G ENKD1 Missense_Mutation p.E320Q 0.19 tolerated(0.07) probably_damaging(0.995) TCGA-XF-AAN3-01 16 80574923 80574923 T C DYNLRB2 5'UTR 0.33 TCGA-XF-AAN3-01 17 20000094 20000094 G C SPECC1 Missense_Mutation p.E44Q 0.37 deleterious(0.03) possibly_damaging(0.611) TCGA-XF-AAN3-01 17 30528026 30528026 A G RHOT1 Silent p.L384L 0.05 TCGA-XF-AAN3-01 17 31087616 31087616 G A MYO1D Silent p.I355I 0.26 TCGA-XF-AAN3-01 17 37119252 37119252 G A FBXO47 Silent p.F9F 0.12 TCGA-XF-AAN3-01 17 37649026 37649026 G A CDK12 Missense_Mutation p.E711K 0.22 probably_damaging(0.991) TCGA-XF-AAN3-01 17 37881979 37881979 G C ERBB2 Silent p.L915L 0.29 TCGA-XF-AAN3-01 17 37883134 37883134 G C ERBB2 Missense_Mutation p.D1013H 0.21 deleterious(0) possibly_damaging(0.823) TCGA-XF-AAN3-01 17 40765719 40765719 C A TUBG1 Missense_Mutation p.Q221K 0.20 tolerated(0.36) benign(0.066) TCGA-XF-AAN3-01 17 4576232 4576232 G A PELP1 Missense_Mutation p.S685L 0.39 benign(0.307) TCGA-XF-AAN3-01 17 47115661 47115661 G A IGF2BP1 Missense_Mutation p.R178H 0.46 tolerated(0.12) benign(0.013) TCGA-XF-AAN3-01 17 55962827 55962827 G C CUEDC1 Silent p.L33L 0.47 TCGA-XF-AAN3-01 17 57652715 57652715 G C DHX40 Missense_Mutation p.E286Q 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-XF-AAN3-01 17 57652778 57652778 G C DHX40 Missense_Mutation p.D307H 0.26 deleterious(0) benign(0.363) TCGA-XF-AAN3-01 17 57918661 57918661 G A VMP1 3'Flank 0.45 TCGA-XF-AAN3-01 17 59668230 59668230 A T NACA2 Missense_Mutation p.F104L 0.34 deleterious(0.01) benign(0.159) TCGA-XF-AAN3-01 17 73261875 73261875 G A MRPS7 Silent p.L200L 0.40 TCGA-XF-AAN3-01 17 7577105 7577105 G A TP53 Missense_Mutation p.P278L 0.44 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 17 80045707 80045707 G T FASN Missense_Mutation p.P966H 0.31 tolerated(0.15) possibly_damaging(0.541) TCGA-XF-AAN3-01 18 28968393 28968393 C G DSG4 Missense_Mutation p.R94G 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-XF-AAN3-01 19 1051202 1051202 G C ABCA7 Silent p.L911L 0.20 TCGA-XF-AAN3-01 19 12542697 12542697 G C ZNF443 Missense_Mutation p.L97V 0.38 tolerated(0.5) benign(0.313) TCGA-XF-AAN3-01 19 14804277 14804277 G C ZNF333 5'UTR 0.16 TCGA-XF-AAN3-01 19 19115078 19115078 G A SUGP2 Missense_Mutation p.S943F 0.13 deleterious(0.01) benign(0.1) TCGA-XF-AAN3-01 19 19766436 19766436 C T ATP13A1 Missense_Mutation p.G433R 0.21 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN3-01 19 35610278 35610278 G A FXYD3 Missense_Mutation p.D57N 0.08 deleterious(0.03) probably_damaging(0.917) TCGA-XF-AAN3-01 19 3767441 3767441 C A MRPL54 3'UTR 0.35 TCGA-XF-AAN3-01 19 43430051 43430051 G A PSG7 Nonsense_Mutation p.Q373* 0.09 TCGA-XF-AAN3-01 19 45476392 45476392 C T CLPTM1 Silent p.A78A 0.36 TCGA-XF-AAN3-01 19 48917311 48917311 G A GRIN2D Silent p.V383V 0.33 TCGA-XF-AAN3-01 19 53794466 53794466 C T BIRC8 5'UTR 0.21 TCGA-XF-AAN3-01 19 55697321 55697321 G A PTPRH Missense_Mutation p.S937L 0.19 possibly_damaging(0.541) TCGA-XF-AAN3-01 19 57036530 57036530 G A ZNF471 Nonsense_Mutation p.W365* 0.26 TCGA-XF-AAN3-01 19 59012740 59012740 G C SLC27A5 Silent p.S365S 0.10 TCGA-XF-AAN3-01 1 112045897 112045897 A G ADORA3 Missense_Mutation p.I27T 0.29 tolerated_low_confidence(0.11) benign(0.129) TCGA-XF-AAN3-01 1 144930941 144930941 C T PDE4DIP Intron 0.06 TCGA-XF-AAN3-01 1 155254985 155254985 C T HCN3 Silent p.F373F 0.34 TCGA-XF-AAN3-01 1 156721162 156721162 C T HDGF Intron 0.15 TCGA-XF-AAN3-01 1 160811560 160811560 G T CD244 Missense_Mutation p.H65N 0.08 tolerated(0.33) benign(0.008) TCGA-XF-AAN3-01 1 181701992 181701992 C T CACNA1E Missense_Mutation p.R924C 0.24 deleterious(0) possibly_damaging(0.689) TCGA-XF-AAN3-01 1 202394796 202394796 G A PPP1R12B Missense_Mutation p.R215H 0.29 deleterious(0.01) possibly_damaging(0.508) TCGA-XF-AAN3-01 1 212558747 212558747 G C TMEM206 Missense_Mutation p.Q183E 0.26 tolerated_low_confidence(0.24) possibly_damaging(0.671) TCGA-XF-AAN3-01 1 213302960 213302960 C T RPS6KC1 Missense_Mutation p.S188F 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-XF-AAN3-01 1 216595619 216595619 C T USH2A Silent p.L20L 0.38 TCGA-XF-AAN3-01 1 236729993 236729993 C G HEATR1 Missense_Mutation p.E1421Q 0.32 tolerated(0.06) benign(0.271) TCGA-XF-AAN3-01 1 248308801 248308801 A T OR2M5 Missense_Mutation p.M118L 0.14 deleterious(0.01) benign(0.049) TCGA-XF-AAN3-01 1 26527516 26527516 C G CATSPER4 Missense_Mutation p.R395G 0.29 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 1 38227180 38227180 G T EPHA10 Silent p.G249G 0.29 TCGA-XF-AAN3-01 1 46105896 46105896 G T GPBP1L1 Missense_Mutation p.P244T 0.32 tolerated(0.59) benign(0.234) TCGA-XF-AAN3-01 1 55282768 55282768 C G C1orf177 Nonsense_Mutation p.S386* 0.29 TCGA-XF-AAN3-01 1 84991427 84991427 C G SPATA1 RNA 0.17 TCGA-XF-AAN3-01 20 30738663 30738663 G A TM9SF4 Silent p.K410K 0.14 TCGA-XF-AAN3-01 20 31830307 31830307 G C BPIFA1 Missense_Mutation p.G249R 0.22 deleterious(0.03) possibly_damaging(0.721) TCGA-XF-AAN3-01 20 50290703 50290703 G A ATP9A Silent p.I342I 0.31 TCGA-XF-AAN3-01 20 54578975 54578975 C T CBLN4 Missense_Mutation p.E85K 0.12 deleterious(0.01) probably_damaging(0.95) TCGA-XF-AAN3-01 20 57767298 57767298 C T ZNF831 Silent p.I408I 0.56 TCGA-XF-AAN3-01 20 62187646 62187646 C T C20orf195 Silent p.V210V 0.30 TCGA-XF-AAN3-01 21 31971061 31971061 C T KRTAP6-2 Missense_Mutation p.G45S 0.24 unknown(0) TCGA-XF-AAN3-01 21 38126596 38126596 C T HLCS Missense_Mutation p.G711D 0.10 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 22 20781775 20781775 C G SCARF2 Missense_Mutation p.E540Q 0.45 tolerated(0.1) probably_damaging(0.92) TCGA-XF-AAN3-01 22 39358513 39358513 G A APOBEC3A Silent p.%3D 0.23 TCGA-XF-AAN3-01 2 116599880 116599880 G C DPP10 Missense_Mutation p.E788Q 0.37 tolerated(0.63) benign(0.012) TCGA-XF-AAN3-01 2 153575054 153575054 C T ARL6IP6 5'UTR 0.14 TCGA-XF-AAN3-01 2 160043418 160043418 C G TANC1 Silent p.L875L 0.19 TCGA-XF-AAN3-01 2 160889488 160889488 C T PLA2R1 Missense_Mutation p.E275K 0.29 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 2 168101136 168101136 T A XIRP2 Missense_Mutation p.S1078R 0.26 benign(0.069) TCGA-XF-AAN3-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.35 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 2 198265579 198265579 C T SF3B1 Missense_Mutation p.E860K 0.35 deleterious(0.02) benign(0.175) TCGA-XF-AAN3-01 2 231101841 231101841 G C SP140 Missense_Mutation p.E35Q 0.24 tolerated(0.07) possibly_damaging(0.854) TCGA-XF-AAN3-01 2 233104 233104 C G SH3YL1 Missense_Mutation p.R177T 0.23 deleterious(0.04) possibly_damaging(0.697) TCGA-XF-AAN3-01 2 25022647 25022647 C G CENPO Silent p.T50T 0.28 TCGA-XF-AAN3-01 2 70188815 70188815 C T ASPRV1 Silent p.G2G 0.17 TCGA-XF-AAN3-01 3 138289995 138289995 G A CEP70 Silent p.L55L 0.60 TCGA-XF-AAN3-01 3 148876570 148876570 G A HPS3 Silent p.E603E 0.55 TCGA-XF-AAN3-01 3 148905872 148905872 C G CP Missense_Mutation p.D611H 0.50 deleterious(0.03) possibly_damaging(0.884) TCGA-XF-AAN3-01 3 150176286 150176286 C G TSC22D2 Missense_Mutation p.L736V 0.07 deleterious(0) possibly_damaging(0.694) TCGA-XF-AAN3-01 3 151134181 151134181 C T MED12L Missense_Mutation p.L2092F 0.15 tolerated_low_confidence(0.11) benign(0.058) TCGA-XF-AAN3-01 3 170150402 170150402 G A CLDN11 Missense_Mutation p.G161D 0.08 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN3-01 3 180328085 180328085 C T TTC14 Missense_Mutation p.H690Y 0.09 tolerated_low_confidence(1) unknown(0) TCGA-XF-AAN3-01 3 186502252 186502252 G A EIF4A2 Missense_Mutation p.D21N 0.53 tolerated_low_confidence(0.09) benign(0.012) TCGA-XF-AAN3-01 3 189586405 189586405 G C TP63 Silent p.R343R 0.52 TCGA-XF-AAN3-01 3 189586422 189586422 G A TP63 Missense_Mutation p.G349E 0.52 deleterious(0) possibly_damaging(0.863) TCGA-XF-AAN3-01 3 189586431 189586431 G T TP63 Missense_Mutation p.R352M 0.55 deleterious(0.02) possibly_damaging(0.822) TCGA-XF-AAN3-01 3 189586439 189586439 G A TP63 Missense_Mutation p.D355N 0.55 deleterious(0.03) benign(0.011) TCGA-XF-AAN3-01 3 44763421 44763421 G T ZNF502 Missense_Mutation p.R371L 0.30 deleterious(0) probably_damaging(1) TCGA-XF-AAN3-01 3 44803150 44803150 G C KIAA1143 5'UTR 0.17 TCGA-XF-AAN3-01 3 49756686 49756686 G A AMIGO3 Silent p.N71N 0.12 TCGA-XF-AAN3-01 3 51308328 51308328 G C DOCK3 Missense_Mutation p.R813T 0.35 tolerated(0.21) probably_damaging(0.996) TCGA-XF-AAN3-01 3 52019390 52019390 A G ACY1 Missense_Mutation p.Y58C 0.35 deleterious(0.02) possibly_damaging(0.537) TCGA-XF-AAN3-01 3 53783393 53783393 T C CACNA1D Missense_Mutation p.I1158T 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-XF-AAN3-01 4 141323201 141323201 C T CLGN Missense_Mutation p.D147N 0.26 tolerated(0.36) benign(0.029) TCGA-XF-AAN3-01 4 144469117 144469117 A C SMARCA5 Missense_Mutation p.I937L 0.22 tolerated(0.44) benign(0.06) TCGA-XF-AAN3-01 4 41640972 41640972 C G LIMCH1 Missense_Mutation p.S320C 0.04 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN3-01 4 74013060 74013060 G A ANKRD17 Silent p.L553L 0.07 TCGA-XF-AAN3-01 5 108714059 108714059 C G PJA2 Missense_Mutation p.D377H 0.15 deleterious(0.01) possibly_damaging(0.832) TCGA-XF-AAN3-01 5 140038573 140038573 C T IK Missense_Mutation p.R334W 0.18 deleterious(0.01) benign(0) TCGA-XF-AAN3-01 5 140626776 140626776 G A PCDHB15 Missense_Mutation p.E544K 0.27 deleterious_low_confidence(0.01) benign(0.113) TCGA-XF-AAN3-01 5 141018424 141018424 G A RELL2 Missense_Mutation p.E83K 0.23 tolerated(0.33) probably_damaging(0.963) TCGA-XF-AAN3-01 5 14498674 14498674 G T TRIO Missense_Mutation p.D2753Y 0.27 unknown(0) TCGA-XF-AAN3-01 5 147030078 147030078 G A JAKMIP2 Silent p.I220I 0.18 TCGA-XF-AAN3-01 5 176305478 176305478 G C UNC5A Missense_Mutation p.E674D 0.06 deleterious(0) benign(0.007) TCGA-XF-AAN3-01 5 256537 256537 G A SDHA 3'UTR 0.26 TCGA-XF-AAN3-01 5 41054878 41054878 G A MROH2B Silent p.L366L 0.22 TCGA-XF-AAN3-01 5 77330255 77330255 C G AP3B1 Missense_Mutation p.E942Q 0.22 tolerated(0.17) benign(0.403) TCGA-XF-AAN3-01 5 98208137 98208137 G C CHD1 Missense_Mutation p.P1232A 0.26 tolerated(0.26) benign(0.009) TCGA-XF-AAN3-01 6 105609918 105609918 G C POPDC3 5'UTR 0.25 TCGA-XF-AAN3-01 6 108581967 108581967 G A SNX3 Silent p.V53V 0.17 TCGA-XF-AAN3-01 6 110301179 110301179 C A GPR6 Missense_Mutation p.F288L 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-XF-AAN3-01 6 112575022 112575022 G A LAMA4 Intron 0.29 TCGA-XF-AAN3-01 6 151865777 151865777 C G CCDC170 Missense_Mutation p.L172V 0.13 tolerated(0.07) possibly_damaging(0.486) TCGA-XF-AAN3-01 6 152763347 152763347 C G SYNE1 Missense_Mutation p.D1291H 0.34 possibly_damaging(0.548) TCGA-XF-AAN3-01 6 26271219 26271219 G A HIST1H3G Missense_Mutation p.R132C 0.22 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-XF-AAN3-01 6 46216504 46216504 C T RCAN2 Missense_Mutation p.E119K 0.29 tolerated(0.43) probably_damaging(0.996) TCGA-XF-AAN3-01 6 88768484 88768484 C G SPACA1 Missense_Mutation p.H140D 0.19 deleterious(0.02) probably_damaging(0.917) TCGA-XF-AAN3-01 7 100390072 100390072 A G ZAN Silent p.Q2585Q 0.35 TCGA-XF-AAN3-01 7 140301638 140301638 G A DENND2A Missense_Mutation p.S187F 0.23 deleterious(0) probably_damaging(0.971) TCGA-XF-AAN3-01 7 149483202 149483202 G A SSPO RNA 0.28 TCGA-XF-AAN3-01 7 150873259 150873259 G A ASB10 Silent p.L448L 0.27 TCGA-XF-AAN3-01 7 154862970 154862970 G A HTR5A-AS1 Missense_Mutation p.S15L 0.39 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-XF-AAN3-01 7 157874045 157874045 G A PTPRN2 Silent p.F556F 0.20 TCGA-XF-AAN3-01 7 16415841 16415841 A G ISPD Missense_Mutation p.V187A 0.34 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN3-01 7 30490888 30490888 G C NOD1 Silent p.L715L 0.23 TCGA-XF-AAN3-01 7 30491056 30491056 G C NOD1 Missense_Mutation p.I659M 0.28 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN3-01 7 38805225 38805225 G C VPS41 Silent p.L428L 0.30 TCGA-XF-AAN3-01 7 5330819 5330819 G A SLC29A4 Silent p.L122L 0.16 TCGA-XF-AAN3-01 7 6472522 6472522 G A DAGLB Silent p.I249I 0.29 TCGA-XF-AAN3-01 7 72413825 72413825 C T POM121 Missense_Mutation p.T833M 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-XF-AAN3-01 7 8008910 8008910 C A GLCCI1 5'UTR 0.44 TCGA-XF-AAN3-01 7 82764883 82764883 C T PCLO Silent p.L661L 0.18 TCGA-XF-AAN3-01 7 87838667 87838667 C T SRI Silent p.L166L 0.20 TCGA-XF-AAN3-01 8 100493950 100493950 C G VPS13B Missense_Mutation p.P1264A 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-XF-AAN3-01 8 17169082 17169082 G C MTMR7 Missense_Mutation p.Q347E 0.31 deleterious(0) probably_damaging(0.982) TCGA-XF-AAN3-01 8 27364481 27364481 G A EPHX2 Silent p.L210L 0.24 TCGA-XF-AAN3-01 8 41551505 41551505 C T ANK1 Missense_Mutation p.R1189Q 0.22 deleterious(0.05) probably_damaging(0.935) TCGA-XF-AAN3-01 8 67514680 67514680 C T MYBL1 Nonsense_Mutation p.W33* 0.25 TCGA-XF-AAN3-01 8 80577108 80577108 G A STMN2 3'UTR 0.37 TCGA-XF-AAN3-01 9 134067676 134067676 C T NUP214 Missense_Mutation p.S1219L 0.17 benign(0.25) TCGA-XF-AAN3-01 9 136501718 136501718 G A DBH Silent p.Q75Q 0.39 TCGA-XF-AAN3-01 9 137582861 137582861 G A COL5A1 Silent p.P71P 0.18 TCGA-XF-AAN3-01 9 137688262 137688262 C T COL5A1 Missense_Mutation p.R948W 0.25 unknown(0) TCGA-XF-AAN3-01 9 138454154 138454154 G T PAEP Missense_Mutation p.W37C 0.17 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN3-01 9 16437329 16437329 C G BNC2 Missense_Mutation p.S288T 0.16 deleterious(0.01) possibly_damaging(0.534) TCGA-XF-AAN3-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN3-01 9 32457121 32457121 C G DDX58 Nonstop_Mutation p.*926Sext*33 0.27 TCGA-XF-AAN3-01 9 35869568 35869568 G C OR13J1 Silent p.L277L 0.29 TCGA-XF-AAN3-01 9 88193896 88193896 C G AGTPBP1 Missense_Mutation p.G1054A 0.05 deleterious(0) probably_damaging(0.984) TCGA-XF-AAN3-01 X 103495476 103495476 G A ESX1 Silent p.F218F 0.04 TCGA-XF-AAN3-01 X 114953501 114953501 G C RP1-241P17.4 Missense_Mutation p.H17D 0.62 deleterious(0.01) benign(0.053) TCGA-XF-AAN3-01 X 153629057 153629057 G C RPL10 Missense_Mutation p.K169N 0.62 tolerated(0.18) benign(0.179) TCGA-XF-AAN3-01 X 31792255 31792255 G A DMD Missense_Mutation p.A2455V 0.08 possibly_damaging(0.682) TCGA-XF-AAN3-01 X 34150375 34150375 C T FAM47A Silent p.Q7Q 0.71 TCGA-XF-AAN4-01 10 106737201 106737201 T C SORCS3 Missense_Mutation p.F302L 0.05 deleterious(0) probably_damaging(0.937) TCGA-XF-AAN4-01 11 122659876 122659876 C T UBASH3B Silent p.F280F 0.05 TCGA-XF-AAN4-01 11 130275620 130275620 G A ADAMTS8 Nonsense_Mutation p.Q835* 0.05 TCGA-XF-AAN4-01 11 58711080 58711080 G A GLYATL1 Missense_Mutation p.G30E 0.06 tolerated_low_confidence(0.27) benign(0.102) TCGA-XF-AAN4-01 11 62362492 62362492 G C MTA2 Missense_Mutation p.L512V 0.05 tolerated(1) benign(0.001) TCGA-XF-AAN4-01 11 68529087 68529087 C A CPT1A Missense_Mutation p.M648I 0.06 deleterious(0.01) possibly_damaging(0.758) TCGA-XF-AAN4-01 12 40657633 40657633 A G LRRK2 Missense_Mutation p.K529R 0.06 tolerated(0.23) benign(0.002) TCGA-XF-AAN4-01 12 56818822 56818822 C G TIMELESS Missense_Mutation p.E565Q 0.06 tolerated(0.26) benign(0.15) TCGA-XF-AAN4-01 12 58158851 58158851 G T CYP27B1 Missense_Mutation p.L245I 0.08 tolerated(0.49) benign(0.033) TCGA-XF-AAN4-01 12 65137014 65137014 C T GNS Silent p.A233A 0.05 TCGA-XF-AAN4-01 14 106967158 106967158 T C IGHV1-46 Missense_Mutation p.Q81R 0.04 deleterious(0.01) benign(0.168) TCGA-XF-AAN4-01 14 64473846 64473846 C G SYNE2 Missense_Mutation p.P1495A 0.05 possibly_damaging(0.734) TCGA-XF-AAN4-01 14 73718244 73718244 G C PAPLN Intron 0.10 TCGA-XF-AAN4-01 15 78526844 78526844 C G ACSBG1 5'UTR 0.05 TCGA-XF-AAN4-01 16 49660147 49660147 T C ZNF423 Missense_Mutation p.I1171V 0.04 deleterious(0.01) probably_damaging(0.977) TCGA-XF-AAN4-01 17 1375431 1375431 T A MYO1C Missense_Mutation p.D630V 0.06 deleterious(0) probably_damaging(0.971) TCGA-XF-AAN4-01 17 76851817 76851817 C A TIMP2 Missense_Mutation p.G199C 0.06 deleterious(0) probably_damaging(0.979) TCGA-XF-AAN4-01 19 17741479 17741479 C A UNC13A Missense_Mutation p.R1170L 0.05 deleterious(0) probably_damaging(0.975) TCGA-XF-AAN4-01 19 34942935 34942935 G A UBA2 Silent p.L307L 0.05 TCGA-XF-AAN4-01 19 36365448 36365448 G A APLP1 Missense_Mutation p.G367S 0.06 tolerated(1) benign(0.037) TCGA-XF-AAN4-01 19 40486588 40486588 G A PSMC4 Silent p.K369K 0.06 TCGA-XF-AAN4-01 19 50165493 50165493 C T IRF3 Missense_Mutation p.E232K 0.08 tolerated(0.25) benign(0.08) TCGA-XF-AAN4-01 19 55107895 55107895 A G LILRA1 Silent p.S400S 0.07 TCGA-XF-AAN4-01 19 55831949 55831949 G T TMEM150B Silent p.L35L 0.08 TCGA-XF-AAN4-01 19 6988808 6988808 C T EMR4P RNA 0.07 TCGA-XF-AAN4-01 1 158435547 158435547 C A OR10K1 Missense_Mutation p.L66I 0.05 deleterious(0.01) benign(0.102) TCGA-XF-AAN4-01 1 162725046 162725046 C G DDR2 Missense_Mutation p.S173C 0.19 tolerated(0.11) benign(0.091) TCGA-XF-AAN4-01 1 231402124 231402124 G A GNPAT Missense_Mutation p.M342I 0.07 tolerated(1) benign(0.001) TCGA-XF-AAN4-01 21 47544582 47544582 T A COL6A2 Silent p.P563P 0.11 TCGA-XF-AAN4-01 2 10016135 10016135 C G TAF1B Nonsense_Mutation p.S232* 0.04 TCGA-XF-AAN4-01 2 133541237 133541237 A T NCKAP5 Silent p.S1049S 0.06 TCGA-XF-AAN4-01 2 160734841 160734841 C G LY75-CD302 Missense_Mutation p.E590Q 0.09 tolerated(0.54) probably_damaging(0.969) TCGA-XF-AAN4-01 2 191302088 191302088 G A MFSD6 Missense_Mutation p.V445M 0.04 deleterious(0.03) benign(0.154) TCGA-XF-AAN4-01 2 196699053 196699053 G C DNAH7 Missense_Mutation p.P2993A 0.08 deleterious(0) probably_damaging(1) TCGA-XF-AAN4-01 2 224462229 224462229 A G SCG2 Missense_Mutation p.M591T 0.06 deleterious(0.05) benign(0.122) TCGA-XF-AAN4-01 2 32312563 32312563 G A SPAST Missense_Mutation p.G140R 0.06 deleterious(0.03) possibly_damaging(0.585) TCGA-XF-AAN4-01 2 61493245 61493245 G T USP34 Missense_Mutation p.Q1831K 0.07 tolerated(0.35) benign(0.008) TCGA-XF-AAN4-01 2 61493247 61493247 C T USP34 Missense_Mutation p.R1830Q 0.06 deleterious(0.04) benign(0.107) TCGA-XF-AAN4-01 5 140502691 140502691 G C PCDHB4 Missense_Mutation p.D371H 0.05 deleterious(0) probably_damaging(1) TCGA-XF-AAN4-01 5 167545377 167545377 G C TENM2 Missense_Mutation p.E632Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN4-01 5 176519668 176519668 G C FGFR4 Missense_Mutation p.E314Q 0.09 deleterious(0.02) probably_damaging(0.978) TCGA-XF-AAN4-01 6 80749413 80749413 A G TTK Missense_Mutation p.I711V 0.05 tolerated(0.07) benign(0.006) TCGA-XF-AAN4-01 7 80374354 80374354 C T SEMA3C Missense_Mutation p.M704I 0.09 tolerated(0.15) benign(0) TCGA-XF-AAN4-01 8 117862949 117862949 G T RAD21 Missense_Mutation p.P510T 0.05 tolerated(0.49) benign(0.003) TCGA-XF-AAN4-01 8 55533897 55533897 C A RP1 Missense_Mutation p.P124Q 0.08 deleterious(0) possibly_damaging(0.556) TCGA-XF-AAN4-01 8 93026964 93026964 G C RUNX1T1 Missense_Mutation p.S115C 0.06 deleterious(0.01) probably_damaging(0.947) TCGA-XF-AAN4-01 9 118950375 118950375 A G PAPPA Missense_Mutation p.H453R 0.10 tolerated(1) benign(0) TCGA-XF-AAN4-01 9 139379239 139379239 G C C9orf163 Missense_Mutation p.L113F 0.10 tolerated_low_confidence(0.22) possibly_damaging(0.765) TCGA-XF-AAN4-01 9 19786781 19786781 A G SLC24A2 Silent p.Y28Y 0.19 TCGA-XF-AAN4-01 9 27948941 27948941 T C LINGO2 Missense_Mutation p.I577V 0.11 tolerated(0.56) benign(0.041) TCGA-XF-AAN4-01 X 101857579 101857579 A G ARMCX5 Missense_Mutation p.I170M 0.03 tolerated(0.14) benign(0.216) TCGA-XF-AAN4-01 X 118723504 118723504 C T NKRF Silent p.L643L 0.04 TCGA-XF-AAN4-01 X 130419396 130419396 C T IGSF1 Missense_Mutation p.A142T 0.06 tolerated(0.38) benign(0.001) TCGA-XF-AAN4-01 X 148037370 148037370 C T AFF2 Missense_Mutation p.R599W 0.05 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN4-01 X 151900595 151900595 G A MAGEA12 Missense_Mutation p.S69F 0.05 tolerated(0.33) benign(0.135) TCGA-XF-AAN4-01 X 73065052 73065052 G C XIST RNA 0.05 TCGA-XF-AAN5-01 10 102750229 102750229 C G C10orf2 Silent p.V507V 0.17 TCGA-XF-AAN5-01 10 114919695 114919695 G A TCF7L2 Intron 0.12 TCGA-XF-AAN5-01 10 115344005 115344005 G A HABP2 Missense_Mutation p.E446K 0.24 deleterious(0) probably_damaging(0.938) TCGA-XF-AAN5-01 10 115344018 115344018 C T HABP2 Missense_Mutation p.S450F 0.22 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN5-01 10 116603614 116603614 G C FAM160B1 Missense_Mutation p.D311H 0.32 deleterious(0.01) possibly_damaging(0.676) TCGA-XF-AAN5-01 10 118434736 118434736 G C HSPA12A Missense_Mutation p.I528M 0.11 deleterious(0) probably_damaging(0.965) TCGA-XF-AAN5-01 10 11994141 11994141 C G UPF2 Missense_Mutation p.K986N 0.33 tolerated(0.07) benign(0.396) TCGA-XF-AAN5-01 10 123842415 123842415 C T TACC2 Nonsense_Mutation p.Q134* 0.18 TCGA-XF-AAN5-01 10 123842421 123842421 C G TACC2 Missense_Mutation p.Q136E 0.22 benign(0.184) TCGA-XF-AAN5-01 10 24832487 24832487 G A KIAA1217 Missense_Mutation p.D1430N 0.12 tolerated(0.1) benign(0.208) TCGA-XF-AAN5-01 10 26880331 26880331 G A LINC00264 RNA 0.16 TCGA-XF-AAN5-01 10 27539728 27539728 G C RP11-85G18.6 RNA 0.22 TCGA-XF-AAN5-01 10 49452884 49452884 G C FRMPD2 Silent p.V106V 0.28 TCGA-XF-AAN5-01 10 75051149 75051149 C A TTC18 Nonsense_Mutation p.E762* 0.11 TCGA-XF-AAN5-01 10 95069870 95069870 G C MYOF Missense_Mutation p.F2018L 0.24 deleterious(0.04) possibly_damaging(0.694) TCGA-XF-AAN5-01 10 95079754 95079754 C A MYOF Nonsense_Mutation p.E1825* 0.38 TCGA-XF-AAN5-01 11 1078358 1078358 C T MUC2 Silent p.P215P 0.16 TCGA-XF-AAN5-01 11 122930538 122930538 C A HSPA8 Nonsense_Mutation p.E255* 0.11 TCGA-XF-AAN5-01 11 126120446 126120446 G A FAM118B Missense_Mutation p.E129K 0.11 deleterious(0.03) benign(0.293) TCGA-XF-AAN5-01 11 128868268 128868268 C G ARHGAP32 Missense_Mutation p.E367Q 0.20 tolerated(0.05) probably_damaging(0.991) TCGA-XF-AAN5-01 11 18054835 18054835 C G TPH1 Missense_Mutation p.D130H 0.19 deleterious(0) probably_damaging(0.989) TCGA-XF-AAN5-01 11 3022397 3022397 C A CARS Nonsense_Mutation p.E815* 0.16 TCGA-XF-AAN5-01 11 45672396 45672396 G A CHST1 Silent p.F26F 0.32 TCGA-XF-AAN5-01 11 56409882 56409882 G C OR5AP2 Missense_Mutation p.Q12E 0.25 tolerated(0.27) benign(0.002) TCGA-XF-AAN5-01 11 57427173 57427173 G C CLP1 Silent p.L75L 0.24 TCGA-XF-AAN5-01 11 57886509 57886509 C T OR9I1 Missense_Mutation p.M136I 0.17 deleterious(0.02) benign(0.023) TCGA-XF-AAN5-01 11 57957998 57957998 C T OR9Q2 Silent p.F12F 0.22 TCGA-XF-AAN5-01 11 58477188 58477188 C G GLYAT 3'UTR 0.14 TCGA-XF-AAN5-01 11 59224445 59224445 C A OR4D6 Silent p.I4I 0.16 TCGA-XF-AAN5-01 11 62554012 62554012 G C TAF6L Missense_Mutation p.K371N 0.40 deleterious(0) possibly_damaging(0.664) TCGA-XF-AAN5-01 11 65113460 65113460 G T DPF2 Missense_Mutation p.D279Y 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-XF-AAN5-01 11 65660635 65660635 C A FOSL1 Nonsense_Mutation p.E180* 0.16 TCGA-XF-AAN5-01 11 67120919 67120919 G C POLD4 5'UTR 0.40 TCGA-XF-AAN5-01 11 67208697 67208697 C A CORO1B Nonsense_Mutation p.E219* 0.20 TCGA-XF-AAN5-01 11 71511823 71511823 G C FAM86C1 3'UTR 0.20 TCGA-XF-AAN5-01 11 73429663 73429663 A T RAB6A Intron 0.37 TCGA-XF-AAN5-01 11 85438956 85438956 G C SYTL2 5'Flank 0.15 TCGA-XF-AAN5-01 12 104332181 104332181 G T HSP90B1 Missense_Mutation p.D307Y 0.36 deleterious(0) probably_damaging(0.936) TCGA-XF-AAN5-01 12 10570948 10570948 C G KLRC3 Missense_Mutation p.E161Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-XF-AAN5-01 12 109865341 109865341 G T MYO1H Silent p.V617V 0.21 TCGA-XF-AAN5-01 12 109889599 109889599 C A KCTD10 Missense_Mutation p.R248L 0.65 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN5-01 12 110182014 110182014 G C FAM222A Missense_Mutation p.K21N 0.16 deleterious(0) benign(0.286) TCGA-XF-AAN5-01 12 118590151 118590151 T C TAOK3 Missense_Mutation p.M806V 0.17 deleterious(0.01) benign(0.01) TCGA-XF-AAN5-01 12 25047231 25047231 G C BCAT1 Nonsense_Mutation p.S98* 0.10 TCGA-XF-AAN5-01 12 29523096 29523096 G A ERGIC2 Nonsense_Mutation p.Q56* 0.38 TCGA-XF-AAN5-01 12 44196143 44196143 C T TWF1 Silent p.Q76Q 0.17 TCGA-XF-AAN5-01 12 45815023 45815023 C T ANO6 Missense_Mutation p.P817L 0.29 tolerated(0.08) benign(0.009) TCGA-XF-AAN5-01 12 4736334 4736334 A T AKAP3 Silent p.I578I 0.19 TCGA-XF-AAN5-01 12 49087666 49087666 G A CCNT1 Missense_Mutation p.S444L 0.21 deleterious(0.04) benign(0.002) TCGA-XF-AAN5-01 12 50831517 50831517 G T LARP4 Splice_Site p.X179_splice 0.42 TCGA-XF-AAN5-01 12 52822449 52822449 G A KRT75 Missense_Mutation p.R372C 0.49 deleterious(0.01) possibly_damaging(0.584) TCGA-XF-AAN5-01 12 54676206 54676206 C A HNRNPA1 Missense_Mutation p.H173Q 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-XF-AAN5-01 12 55356692 55356692 G C TESPA1 Silent p.L330L 0.19 TCGA-XF-AAN5-01 12 57323194 57323194 C G SDR9C7 Missense_Mutation p.G235A 0.57 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 12 57909836 57909836 C T MARS Intron 0.31 TCGA-XF-AAN5-01 12 64456769 64456769 G C SRGAP1 Missense_Mutation p.E292Q 0.26 tolerated(0.79) benign(0.186) TCGA-XF-AAN5-01 12 72300887 72300887 G C TBC1D15 Missense_Mutation p.L440F 0.14 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 12 78513401 78513401 C T NAV3 Missense_Mutation p.S1142L 0.28 deleterious(0) benign(0.182) TCGA-XF-AAN5-01 12 7947715 7947715 C G NANOG 3'UTR 0.30 TCGA-XF-AAN5-01 12 91497980 91497980 C G LUM Missense_Mutation p.E327Q 0.31 tolerated(0.38) benign(0.171) TCGA-XF-AAN5-01 12 95611642 95611642 G C VEZT Missense_Mutation p.D6H 0.19 deleterious(0.02) benign(0.02) TCGA-XF-AAN5-01 13 20579242 20579242 G C ZMYM2 Missense_Mutation p.V388L 0.29 tolerated(0.08) possibly_damaging(0.895) TCGA-XF-AAN5-01 13 24895767 24895767 C G C1QTNF9 Missense_Mutation p.S288C 0.27 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 13 25473695 25473695 C G CENPJ Missense_Mutation p.Q951H 0.24 tolerated(0.07) benign(0.062) TCGA-XF-AAN5-01 13 26436542 26436542 G T ATP8A2 Missense_Mutation p.G1060V 0.22 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN5-01 13 33017236 33017236 C G N4BP2L2 Missense_Mutation p.E480Q 0.41 tolerated(0.45) benign(0.002) TCGA-XF-AAN5-01 13 37580265 37580265 C G EXOSC8 Missense_Mutation p.Q120E 0.21 tolerated(0.43) benign(0.001) TCGA-XF-AAN5-01 13 42259311 42259311 G C VWA8 Nonsense_Mutation p.S1400* 0.20 TCGA-XF-AAN5-01 13 46627893 46627893 C G CPB2 Missense_Mutation p.L376F 0.17 tolerated(0.07) probably_damaging(0.975) TCGA-XF-AAN5-01 13 49842084 49842084 G A CDADC1 Missense_Mutation p.G297R 0.28 deleterious(0.03) benign(0.107) TCGA-XF-AAN5-01 13 77629765 77629765 C G MYCBP2 Silent p.V4487V 0.22 TCGA-XF-AAN5-01 14 101530878 101530878 G A MIR541 RNA 0.17 TCGA-XF-AAN5-01 14 105686426 105686426 C G BRF1 Missense_Mutation p.D453H 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-XF-AAN5-01 14 23445862 23445862 C T AJUBA Missense_Mutation p.D390N 0.23 deleterious(0) probably_damaging(0.945) TCGA-XF-AAN5-01 14 24642120 24642120 C G REC8 Silent p.L46L 0.28 TCGA-XF-AAN5-01 14 24642246 24642246 C G REC8 Silent p.L88L 0.10 TCGA-XF-AAN5-01 14 24975333 24975333 C G CMA1 Silent p.L167L 0.28 TCGA-XF-AAN5-01 14 42360855 42360855 C T LRFN5 Silent p.H596H 0.17 TCGA-XF-AAN5-01 14 51223275 51223275 C A NIN Silent p.L1491L 0.33 TCGA-XF-AAN5-01 14 61442822 61442822 T C TRMT5 Missense_Mutation p.Y272C 0.22 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN5-01 14 70235600 70235600 C T SRSF5 Nonsense_Mutation p.R95* 0.28 TCGA-XF-AAN5-01 14 74422185 74422185 G T COQ6 Missense_Mutation p.M110I 0.22 tolerated(0.21) benign(0.215) TCGA-XF-AAN5-01 14 74516615 74516615 C G CCDC176 Missense_Mutation p.L335V 0.25 tolerated(0.1) possibly_damaging(0.747) TCGA-XF-AAN5-01 14 94962911 94962911 G A SERPINA12 Missense_Mutation p.S235L 0.25 deleterious(0.04) benign(0.037) TCGA-XF-AAN5-01 15 23931407 23931407 C T NDN Missense_Mutation p.E320K 0.15 deleterious_low_confidence(0.01) benign(0.254) TCGA-XF-AAN5-01 15 25287179 25287179 C T SNORD109A RNA 0.33 TCGA-XF-AAN5-01 15 25310262 25310262 G A SNORD116-6 RNA 0.23 TCGA-XF-AAN5-01 15 28358394 28358394 G C HERC2 Silent p.L4685L 0.26 TCGA-XF-AAN5-01 15 37329015 37329018 TGTG - MEIS2 Frame_Shift_Del p.T300Ifs*12 0.23 TCGA-XF-AAN5-01 15 40557007 40557007 G A PAK6 Silent p.K7K 0.17 TCGA-XF-AAN5-01 15 42375911 42375911 C T PLA2G4D Intron 0.36 TCGA-XF-AAN5-01 15 43026468 43026468 G C CDAN1 Missense_Mutation p.L405V 0.19 deleterious(0) probably_damaging(0.979) TCGA-XF-AAN5-01 15 43932682 43932682 G A CATSPER2 Missense_Mutation p.S134F 0.10 tolerated(0.1) benign(0.265) TCGA-XF-AAN5-01 15 44097612 44097612 C T MFAP1 Missense_Mutation p.D367N 0.35 deleterious(0) probably_damaging(0.98) TCGA-XF-AAN5-01 15 51768876 51768876 G C DMXL2 Missense_Mutation p.Q2292E 0.16 tolerated(0.15) possibly_damaging(0.9) TCGA-XF-AAN5-01 15 52527932 52527932 G C MYO5C Nonsense_Mutation p.S966* 0.14 TCGA-XF-AAN5-01 15 56132708 56132708 G - NEDD4 Frame_Shift_Del p.F1003Lfs*8 0.17 TCGA-XF-AAN5-01 15 56132822 56132822 G C NEDD4 Missense_Mutation p.H995D 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 15 64454242 64454242 C G PPIB Missense_Mutation p.E83Q 0.22 deleterious(0.02) possibly_damaging(0.52) TCGA-XF-AAN5-01 15 76496185 76496185 C G C15orf27 Silent p.L375L 0.20 TCGA-XF-AAN5-01 15 76496191 76496191 C T C15orf27 Silent p.L377L 0.23 TCGA-XF-AAN5-01 15 84683327 84683327 G C ADAMTSL3 Missense_Mutation p.R1336T 0.16 tolerated(0.11) benign(0.012) TCGA-XF-AAN5-01 16 10567822 10567822 G C ATF7IP2 Missense_Mutation p.E509Q 0.21 deleterious(0) probably_damaging(0.909) TCGA-XF-AAN5-01 16 15692735 15692735 C G KIAA0430 Missense_Mutation p.E1654Q 0.35 deleterious(0.03) possibly_damaging(0.868) TCGA-XF-AAN5-01 16 1637244 1637244 C G IFT140 Missense_Mutation p.E322Q 0.19 tolerated(0.09) benign(0.212) TCGA-XF-AAN5-01 16 20329594 20329594 G A GP2 Missense_Mutation p.S392F 0.36 deleterious(0) probably_damaging(0.987) TCGA-XF-AAN5-01 16 2131630 2131630 G A TSC2 Silent p.P1215P 0.23 TCGA-XF-AAN5-01 16 2503509 2503509 C T CCNF Silent p.L562L 0.31 TCGA-XF-AAN5-01 16 2871501 2871501 G A PRSS21 Nonsense_Mutation p.W280* 0.22 TCGA-XF-AAN5-01 16 3615025 3615025 C G NLRC3 Missense_Mutation p.E52Q 0.50 deleterious(0.01) possibly_damaging(0.459) TCGA-XF-AAN5-01 16 3799671 3799671 C G CREBBP Missense_Mutation p.D1265H 0.14 unknown(0) TCGA-XF-AAN5-01 16 57717997 57717997 C A GPR97 Missense_Mutation p.F345L 0.18 tolerated(0.36) benign(0.036) TCGA-XF-AAN5-01 16 69377382 69377382 G A TMED6 Silent p.I217I 0.21 TCGA-XF-AAN5-01 16 71748751 71748751 G C PHLPP2 Intron 0.23 TCGA-XF-AAN5-01 16 85111125 85111125 G T KIAA0513 Missense_Mutation p.K223N 0.27 deleterious(0.01) possibly_damaging(0.548) TCGA-XF-AAN5-01 16 89256738 89256738 G A CDH15 Missense_Mutation p.E356K 0.36 tolerated(0.88) benign(0.008) TCGA-XF-AAN5-01 16 89858916 89858916 G A FANCA Missense_Mutation p.A349V 0.07 tolerated(0.14) possibly_damaging(0.499) TCGA-XF-AAN5-01 16 89977038 89977038 C T TCF25 Silent p.F613F 0.28 TCGA-XF-AAN5-01 17 16525749 16525749 G C ZNF624 Missense_Mutation p.F817L 0.17 deleterious(0) probably_damaging(0.989) TCGA-XF-AAN5-01 17 17699109 17699109 G A RAI1 Missense_Mutation p.M949I 0.18 tolerated(0.79) benign(0.008) TCGA-XF-AAN5-01 17 21094372 21094372 C T DHRS7B Missense_Mutation p.S295F 0.23 tolerated(0.71) benign(0.009) TCGA-XF-AAN5-01 17 26888470 26888470 C G PIGS Missense_Mutation p.E216Q 0.15 deleterious(0.01) benign(0.079) TCGA-XF-AAN5-01 17 27382114 27382114 G A PIPOX Missense_Mutation p.E281K 0.21 deleterious(0.01) benign(0.269) TCGA-XF-AAN5-01 17 29162668 29162668 G C ATAD5 Missense_Mutation p.R523S 0.24 deleterious(0.01) benign(0.013) TCGA-XF-AAN5-01 17 29554250 29554250 C T NF1 Nonsense_Mutation p.Q756* 0.26 TCGA-XF-AAN5-01 17 3119639 3119639 C A OR1A1 Missense_Mutation p.S242Y 0.24 deleterious(0) possibly_damaging(0.905) TCGA-XF-AAN5-01 17 3629108 3629108 A C GSG2 Missense_Mutation p.S627R 0.17 deleterious(0) probably_damaging(0.995) TCGA-XF-AAN5-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.24 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN5-01 17 40042427 40042427 G A ACLY Silent p.L670L 0.24 TCGA-XF-AAN5-01 17 41168055 41168055 C G VAT1 3'UTR 0.20 TCGA-XF-AAN5-01 17 5087431 5087431 C T ZNF594 Missense_Mutation p.E41K 0.10 deleterious(0.05) benign(0.067) TCGA-XF-AAN5-01 17 5487267 5487267 C G NLRP1 Missense_Mutation p.G4A 0.30 tolerated(0.12) possibly_damaging(0.714) TCGA-XF-AAN5-01 17 55339521 55339521 A G MSI2 Missense_Mutation p.K94E 0.19 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN5-01 17 56247408 56247408 G A OR4D2 Missense_Mutation p.R131H 0.30 tolerated(1) benign(0) TCGA-XF-AAN5-01 17 57076725 57076725 C G TRIM37 3'UTR 0.16 TCGA-XF-AAN5-01 17 57076776 57076776 C A TRIM37 Missense_Mutation p.D953Y 0.16 deleterious_low_confidence(0) benign(0.328) TCGA-XF-AAN5-01 17 57076800 57076800 C G TRIM37 Missense_Mutation p.D945H 0.12 deleterious_low_confidence(0.02) benign(0.396) TCGA-XF-AAN5-01 17 57076821 57076821 C T TRIM37 Splice_Site p.X938_splice 0.13 TCGA-XF-AAN5-01 17 61571015 61571015 G A ACE Missense_Mutation p.S1044N 0.18 tolerated(0.43) benign(0.001) TCGA-XF-AAN5-01 17 61907789 61907789 G C PSMC5 Missense_Mutation p.E160D 0.27 deleterious(0.02) probably_damaging(0.968) TCGA-XF-AAN5-01 17 66981075 66981075 G C ABCA9 Missense_Mutation p.L1444V 0.15 deleterious(0) probably_damaging(0.986) TCGA-XF-AAN5-01 17 67161150 67161150 G A ABCA10 Silent p.F1079F 0.16 TCGA-XF-AAN5-01 17 67285399 67285399 G C ABCA5 Missense_Mutation p.I607M 0.24 deleterious(0) probably_damaging(0.943) TCGA-XF-AAN5-01 17 7224101 7224101 G A NEURL4 Silent p.L1168L 0.30 TCGA-XF-AAN5-01 17 72350546 72350546 G C KIF19 Missense_Mutation p.E852Q 0.27 deleterious(0.02) possibly_damaging(0.652) TCGA-XF-AAN5-01 17 73491001 73491001 G C KIAA0195 Missense_Mutation p.E872Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 17 7350839 7350839 C T CHRNB1 Silent p.F160F 0.24 TCGA-XF-AAN5-01 17 73949678 73949678 C A ACOX1 Silent p.V266V 0.26 TCGA-XF-AAN5-01 17 74151721 74151721 G A RNF157 Silent p.I540I 0.50 TCGA-XF-AAN5-01 17 7752197 7752197 C G KDM6B Missense_Mutation p.S864C 0.35 possibly_damaging(0.843) TCGA-XF-AAN5-01 17 8076758 8076758 G T TMEM107 3'Flank 0.23 TCGA-XF-AAN5-01 17 80885817 80885817 G C TBCD Silent p.L882L 0.20 TCGA-XF-AAN5-01 17 8701533 8701533 G C MFSD6L Missense_Mutation p.I302M 0.15 deleterious(0) probably_damaging(0.954) TCGA-XF-AAN5-01 18 20602122 20602122 G C RBBP8 Missense_Mutation p.E829Q 0.25 tolerated(0.19) probably_damaging(0.98) TCGA-XF-AAN5-01 18 22671936 22671936 G A ZNF521 Silent p.F1256F 0.29 TCGA-XF-AAN5-01 18 30093538 30093538 C T WBP11P1 RNA 0.17 TCGA-XF-AAN5-01 18 30093692 30093692 C G WBP11P1 RNA 0.18 TCGA-XF-AAN5-01 18 3134823 3134823 C T MYOM1 Splice_Site p.X737_splice 0.22 TCGA-XF-AAN5-01 18 3135713 3135713 C G MYOM1 Missense_Mutation p.E681Q 0.44 tolerated(0.16) benign(0.082) TCGA-XF-AAN5-01 18 43820140 43820140 G C C18orf25 Silent p.L295L 0.21 TCGA-XF-AAN5-01 18 50866268 50866268 G A DCC Missense_Mutation p.E784K 0.23 deleterious(0) possibly_damaging(0.698) TCGA-XF-AAN5-01 18 67993556 67993556 G C SOCS6 3'UTR 0.29 TCGA-XF-AAN5-01 19 11277266 11277266 C T KANK2 Missense_Mutation p.E850K 0.09 tolerated(0.19) probably_damaging(0.995) TCGA-XF-AAN5-01 19 12255998 12255998 C G ZNF625 3'Flank 0.23 TCGA-XF-AAN5-01 19 12807343 12807343 G T FBXW9 Nonsense_Mutation p.S18* 0.21 TCGA-XF-AAN5-01 19 12829901 12829901 G A TNPO2 Silent p.I89I 0.24 TCGA-XF-AAN5-01 19 12903692 12903692 G A JUNB 3'UTR 0.42 TCGA-XF-AAN5-01 19 12996300 12996300 G A KLF1 Silent p.L248L 0.27 TCGA-XF-AAN5-01 19 15366361 15366361 C T BRD4 Silent p.T598T 0.24 TCGA-XF-AAN5-01 19 16976382 16976382 C G SIN3B Missense_Mutation p.I547M 0.32 deleterious(0) possibly_damaging(0.841) TCGA-XF-AAN5-01 19 17836875 17836875 G T MAP1S Nonsense_Mutation p.E228* 0.15 TCGA-XF-AAN5-01 19 22940047 22940047 T G ZNF99 3'Flank 0.32 TCGA-XF-AAN5-01 19 2877614 2877614 G A ZNF556 Missense_Mutation p.E220K 0.27 tolerated(0.32) benign(0.063) TCGA-XF-AAN5-01 19 2877835 2877835 G A ZNF556 Silent p.G293G 0.13 TCGA-XF-AAN5-01 19 2878053 2878053 G C ZNF556 Missense_Mutation p.R366T 0.29 tolerated(0.09) benign(0.119) TCGA-XF-AAN5-01 19 29698779 29698779 G C UQCRFS1 Missense_Mutation p.F167L 0.28 deleterious(0.02) benign(0.203) TCGA-XF-AAN5-01 19 39086336 39086336 G C MAP4K1 Missense_Mutation p.P738R 0.29 tolerated(0.1) probably_damaging(1) TCGA-XF-AAN5-01 19 40872383 40872383 G C PLD3 5'UTR 0.20 TCGA-XF-AAN5-01 19 40901822 40901822 C G PRX Missense_Mutation p.E813Q 0.17 tolerated(0.28) possibly_damaging(0.607) TCGA-XF-AAN5-01 19 40902083 40902083 C G PRX Missense_Mutation p.E726Q 0.22 deleterious(0.01) possibly_damaging(0.607) TCGA-XF-AAN5-01 19 40902485 40902485 C G PRX Missense_Mutation p.E592Q 0.24 tolerated(0.06) possibly_damaging(0.607) TCGA-XF-AAN5-01 19 44223768 44223768 G A IRGC Missense_Mutation p.G353D 0.16 tolerated(0.23) probably_damaging(0.985) TCGA-XF-AAN5-01 19 47349385 47349385 G T AP2S1 Silent p.L6L 0.27 TCGA-XF-AAN5-01 19 47349397 47349397 G C AP2S1 Missense_Mutation p.I2M 0.20 tolerated(0.15) probably_damaging(0.954) TCGA-XF-AAN5-01 19 48525485 48525485 G C ELSPBP1 Missense_Mutation p.K191N 0.36 tolerated(0.05) probably_damaging(0.911) TCGA-XF-AAN5-01 19 48525589 48525589 G A ELSPBP1 Intron 0.40 TCGA-XF-AAN5-01 19 54664722 54664722 G A TMC4 Silent p.I628I 0.16 TCGA-XF-AAN5-01 19 7614810 7614810 C T PNPLA6 Silent p.F551F 0.19 TCGA-XF-AAN5-01 19 8145968 8145968 G A FBN3 Nonsense_Mutation p.Q2458* 0.11 TCGA-XF-AAN5-01 19 9059418 9059418 G C MUC16 Nonsense_Mutation p.S9343* 0.27 TCGA-XF-AAN5-01 19 9324990 9324990 G A OR7D4 Missense_Mutation p.P175L 0.07 deleterious(0.02) possibly_damaging(0.573) TCGA-XF-AAN5-01 1 103471422 103471422 G A COL11A1 Missense_Mutation p.P606L 0.30 unknown(0) TCGA-XF-AAN5-01 1 117554289 117554289 C G CD101 Missense_Mutation p.S181C 0.28 deleterious(0) probably_damaging(0.996) TCGA-XF-AAN5-01 1 154988705 154988705 G C ZBTB7B Missense_Mutation p.K422N 0.28 deleterious(0) probably_damaging(0.985) TCGA-XF-AAN5-01 1 155451168 155451168 C A ASH1L Missense_Mutation p.G498V 0.10 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-XF-AAN5-01 1 156264264 156264264 C G C1orf85 Missense_Mutation p.W157C 0.30 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 1 158984723 158984723 G C IFI16 Missense_Mutation p.E85Q 0.26 deleterious(0.04) possibly_damaging(0.71) TCGA-XF-AAN5-01 1 161132742 161132742 C G USP21 Silent p.L309L 0.19 TCGA-XF-AAN5-01 1 162729612 162729612 C T DDR2 Missense_Mutation p.T233I 0.28 deleterious(0) probably_damaging(0.917) TCGA-XF-AAN5-01 1 16357015 16357015 G C CLCNKA Missense_Mutation p.E490Q 0.12 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 1 16458911 16458912 - A EPHA2 Frame_Shift_Ins p.E693* 0.25 TCGA-XF-AAN5-01 1 173952641 173952641 G A RC3H1 Silent p.L169L 0.26 TCGA-XF-AAN5-01 1 17552596 17552596 C T PADI1 Missense_Mutation p.L199F 0.41 deleterious(0) probably_damaging(0.989) TCGA-XF-AAN5-01 1 185833601 185833601 G T HMCN1 Splice_Site p.X114_splice 0.17 TCGA-XF-AAN5-01 1 196749052 196749052 G A CFHR3 Missense_Mutation p.V127I 0.26 tolerated(1) benign(0.357) TCGA-XF-AAN5-01 1 212515547 212515547 C G PPP2R5A Missense_Mutation p.F166L 0.25 tolerated(0.06) benign(0.142) TCGA-XF-AAN5-01 1 214507533 214507533 C A SMYD2 Intron 0.31 TCGA-XF-AAN5-01 1 236749123 236749123 C A HEATR1 Missense_Mutation p.K682N 0.10 tolerated(0.12) benign(0.014) TCGA-XF-AAN5-01 1 241907726 241907726 A G WDR64 Missense_Mutation p.Y491C 0.31 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 1 243589797 243589797 G C SDCCAG8 Missense_Mutation p.R641T 0.48 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 1 248309280 248309280 C G OR2M5 Missense_Mutation p.F277L 0.18 deleterious(0.02) possibly_damaging(0.766) TCGA-XF-AAN5-01 1 248402797 248402797 C A OR2M4 Nonsense_Mutation p.C189* 0.32 TCGA-XF-AAN5-01 1 248845405 248845405 C A OR14I1 Missense_Mutation p.L67F 0.13 deleterious(0) probably_damaging(0.957) TCGA-XF-AAN5-01 1 3732014 3732014 C T CEP104 Silent p.P910P 0.25 TCGA-XF-AAN5-01 1 39757600 39757600 G C MACF1 Missense_Mutation p.E607Q 0.12 possibly_damaging(0.854) TCGA-XF-AAN5-01 1 40525816 40525816 G C CAP1 Missense_Mutation p.E64Q 0.14 tolerated(0.57) benign(0.144) TCGA-XF-AAN5-01 1 47717290 47717290 G T STIL Missense_Mutation p.L1129I 0.40 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 1 52991445 52991445 C T ZCCHC11 Missense_Mutation p.D170N 0.26 tolerated_low_confidence(0.3) benign(0.087) TCGA-XF-AAN5-01 1 70646808 70646808 C T LRRC40 Missense_Mutation p.E208K 0.19 tolerated(0.73) benign(0.001) TCGA-XF-AAN5-01 1 76215151 76215151 C T ACADM Silent p.F256F 0.28 TCGA-XF-AAN5-01 1 82445561 82445561 T G LPHN2 Missense_Mutation p.I993M 0.27 deleterious(0.02) benign(0.065) TCGA-XF-AAN5-01 1 91404729 91404729 C G ZNF644 Missense_Mutation p.E728Q 0.14 tolerated(0.34) benign(0.014) TCGA-XF-AAN5-01 1 91405095 91405095 C G ZNF644 Missense_Mutation p.E606Q 0.18 deleterious(0.03) possibly_damaging(0.864) TCGA-XF-AAN5-01 20 10625521 10625521 G C JAG1 Missense_Mutation p.I778M 0.25 deleterious(0.01) benign(0.258) TCGA-XF-AAN5-01 20 21376858 21376858 C T NKX2-4 Silent p.A252A 0.33 TCGA-XF-AAN5-01 20 32232507 32232507 G C CBFA2T2 3'UTR 0.20 TCGA-XF-AAN5-01 20 33595366 33595366 C T TRPC4AP Missense_Mutation p.R558Q 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-XF-AAN5-01 20 34060495 34060495 C T CEP250 Intron 0.33 TCGA-XF-AAN5-01 20 35242756 35242757 - GG SLA2 Frame_Shift_Ins p.L206Pfs*4 0.16 TCGA-XF-AAN5-01 20 35444668 35444668 C G SOGA1 Missense_Mutation p.E393Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 20 39721171 39721171 C T TOP1 Missense_Mutation p.P225L 0.23 deleterious(0.01) probably_damaging(1) TCGA-XF-AAN5-01 20 58482421 58482421 T A SYCP2 Missense_Mutation p.E344V 0.33 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 20 58482422 58482422 C A SYCP2 Nonsense_Mutation p.E344* 0.33 TCGA-XF-AAN5-01 21 37618360 37618360 C G DOPEY2 Nonsense_Mutation p.S1361* 0.27 TCGA-XF-AAN5-01 21 38309113 38309113 G A HLCS Missense_Mutation p.T211M 0.16 tolerated(0.09) benign(0.125) TCGA-XF-AAN5-01 21 38522391 38522391 G A TTC3 Missense_Mutation p.G711E 0.19 tolerated(1) benign(0.069) TCGA-XF-AAN5-01 21 42824625 42824625 G C MX1 Missense_Mutation p.Q529H 0.15 deleterious(0.05) benign(0.286) TCGA-XF-AAN5-01 22 17288968 17288969 - T XKR3 5'UTR 0.12 TCGA-XF-AAN5-01 22 30374437 30374437 G C MTMR3 Missense_Mutation p.E4Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 22 31837807 31837807 A C EIF4ENIF1 Missense_Mutation p.L835R 0.36 deleterious(0) benign(0.17) TCGA-XF-AAN5-01 22 37098448 37098448 C G CACNG2 Missense_Mutation p.M58I 0.19 deleterious(0.02) benign(0.234) TCGA-XF-AAN5-01 22 40697304 40697304 C G TNRC6B Missense_Mutation p.Q1363E 0.27 deleterious(0) benign(0.062) TCGA-XF-AAN5-01 22 41895736 41895736 C G ACO2 Missense_Mutation p.L15V 0.22 tolerated_low_confidence(0.09) benign(0.049) TCGA-XF-AAN5-01 22 43267410 43267410 C T PACSIN2 Missense_Mutation p.G472R 0.23 deleterious(0.01) probably_damaging(1) TCGA-XF-AAN5-01 22 44112839 44112839 C T EFCAB6 Silent p.E257E 0.26 TCGA-XF-AAN5-01 2 131802939 131802939 C G ARHGEF4 Intron 0.25 TCGA-XF-AAN5-01 2 136499499 136499499 G T UBXN4 5'UTR 0.38 TCGA-XF-AAN5-01 2 169023827 169023827 T A STK39 Missense_Mutation p.M138L 0.11 tolerated(0.16) possibly_damaging(0.844) TCGA-XF-AAN5-01 2 178098945 178098956 GACTTACTCCAA - NFE2L2 In_Frame_Del p.L30_S33del 0.28 TCGA-XF-AAN5-01 2 179566962 179566962 C A TTN Silent p.S10148S 0.26 TCGA-XF-AAN5-01 2 179577827 179577827 G T TTN Missense_Mutation p.P9012T 0.23 TCGA-XF-AAN5-01 2 180819034 180819034 G A CWC22 Silent p.F529F 0.27 TCGA-XF-AAN5-01 2 183291395 183291395 C A PDE1A Intron 0.09 TCGA-XF-AAN5-01 2 185802325 185802325 G A ZNF804A Silent p.Q734Q 0.25 TCGA-XF-AAN5-01 2 190728613 190728613 G T PMS1 Missense_Mutation p.K667N 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-XF-AAN5-01 2 196852856 196852857 CT - DNAH7 Frame_Shift_Del p.S484Cfs*5 0.13 TCGA-XF-AAN5-01 2 207824402 207824402 G C CPO Missense_Mutation p.R140S 0.15 tolerated(0.11) benign(0.014) TCGA-XF-AAN5-01 2 217279962 217279962 C T SMARCAL1 Missense_Mutation p.H179Y 0.09 tolerated(0.37) benign(0.002) TCGA-XF-AAN5-01 2 219114619 219114619 G T ARPC2 Nonsense_Mutation p.E285* 0.31 TCGA-XF-AAN5-01 2 223086084 223086084 G T PAX3 Missense_Mutation p.A272E 0.23 deleterious(0.01) benign(0.057) TCGA-XF-AAN5-01 2 230656916 230656916 C A TRIP12 Nonsense_Mutation p.E1315* 0.28 TCGA-XF-AAN5-01 2 230661311 230661311 G C TRIP12 Missense_Mutation p.S1196C 0.24 tolerated(0.84) benign(0) TCGA-XF-AAN5-01 2 230661446 230661446 G C TRIP12 Nonsense_Mutation p.S1151* 0.15 TCGA-XF-AAN5-01 2 234669649 234669650 AG - UGT1A8 Intron 0.25 TCGA-XF-AAN5-01 2 239157733 239157733 C T PER2 Silent p.T1196T 0.28 TCGA-XF-AAN5-01 2 28352178 28352178 C T BRE Missense_Mutation p.S204F 0.14 tolerated(0.22) possibly_damaging(0.649) TCGA-XF-AAN5-01 2 32475708 32475708 C G NLRC4 Missense_Mutation p.E409Q 0.27 tolerated(0.8) benign(0.003) TCGA-XF-AAN5-01 2 44565657 44565657 C G PREPL Missense_Mutation p.D330H 0.19 tolerated(0.13) possibly_damaging(0.593) TCGA-XF-AAN5-01 2 48808786 48808786 C T STON1-GTF2A1L Silent p.F338F 0.27 TCGA-XF-AAN5-01 2 55549772 55549772 C G CCDC88A Missense_Mutation p.Q1017H 0.25 tolerated(0.12) benign(0.029) TCGA-XF-AAN5-01 2 61345206 61345206 G C KIAA1841 Missense_Mutation p.M661I 0.33 tolerated(0.18) benign(0.001) TCGA-XF-AAN5-01 2 61431701 61431701 C A USP34 Missense_Mutation p.D3064Y 0.09 deleterious(0) probably_damaging(0.962) TCGA-XF-AAN5-01 2 75899075 75899075 C T GCFC2 Splice_Site p.X652_splice 0.18 TCGA-XF-AAN5-01 2 98804452 98804452 G C VWA3B Missense_Mutation p.K442N 0.26 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN5-01 3 111842515 111842515 C G GCSAM Missense_Mutation p.E110D 0.25 deleterious(0) probably_damaging(0.98) TCGA-XF-AAN5-01 3 113775407 113775407 C A KIAA1407 5'UTR 0.29 TCGA-XF-AAN5-01 3 118922881 118922881 C G UPK1B 3'UTR 0.38 TCGA-XF-AAN5-01 3 119133187 119133187 C A ARHGAP31 Missense_Mutation p.P804Q 0.26 deleterious(0.01) probably_damaging(0.931) TCGA-XF-AAN5-01 3 135825088 135825088 G C PPP2R3A Missense_Mutation p.D1085H 0.14 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN5-01 3 14746102 14746102 C G C3orf20 Missense_Mutation p.F379L 0.21 tolerated(0.16) probably_damaging(0.999) TCGA-XF-AAN5-01 3 154898202 154898202 G A MME Missense_Mutation p.R736H 0.08 tolerated(0.13) benign(0) TCGA-XF-AAN5-01 3 164756871 164756871 C T SI Missense_Mutation p.E766K 0.22 tolerated(0.06) possibly_damaging(0.513) TCGA-XF-AAN5-01 3 169999702 169999702 G A PRKCI Missense_Mutation p.G338E 0.20 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 3 184800814 184800814 G A C3orf70 Missense_Mutation p.T245M 0.12 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-XF-AAN5-01 3 193130133 193130133 G C ATP13A4 Missense_Mutation p.I1014M 0.22 tolerated(0.22) benign(0.005) TCGA-XF-AAN5-01 3 25502708 25502708 C A RARB Missense_Mutation p.S61Y 0.23 deleterious(0.02) benign(0.367) TCGA-XF-AAN5-01 3 33058246 33058246 C G GLB1 Missense_Mutation p.E478D 0.18 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN5-01 3 35835348 35835348 G C ARPP21 Silent p.L780L 0.15 TCGA-XF-AAN5-01 3 44402978 44402978 C G TCAIM Missense_Mutation p.S96C 0.16 tolerated(0.11) possibly_damaging(0.455) TCGA-XF-AAN5-01 3 56649180 56649180 G C CCDC66 Missense_Mutation p.E531Q 0.22 deleterious(0.05) possibly_damaging(0.477) TCGA-XF-AAN5-01 3 97744436 97744436 A G GABRR3 RNA 0.17 TCGA-XF-AAN5-01 3 98512581 98512581 C T ST3GAL6 Silent p.L324L 0.19 TCGA-XF-AAN5-01 3 9990556 9990556 G A PRRT3 Missense_Mutation p.R353W 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 4 100048496 100048496 C T ADH4 Splice_Site p.X282_splice 0.29 TCGA-XF-AAN5-01 4 1016163 1016163 G A FGFRL1 Silent p.L84L 0.33 TCGA-XF-AAN5-01 4 143094902 143094902 G A INPP4B Silent p.L414L 0.16 TCGA-XF-AAN5-01 4 143094936 143094936 G A INPP4B Missense_Mutation p.S403L 0.17 tolerated(0.14) probably_damaging(0.987) TCGA-XF-AAN5-01 4 154636767 154636767 G A RNF175 Silent p.I226I 0.21 TCGA-XF-AAN5-01 4 158256915 158256915 C T GRIA2 Silent p.I453I 0.18 TCGA-XF-AAN5-01 4 159520487 159520487 C A RXFP1 Missense_Mutation p.S99Y 0.32 tolerated(0.98) benign(0.041) TCGA-XF-AAN5-01 4 165962632 165962632 G C TRIM60 Missense_Mutation p.E470Q 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-XF-AAN5-01 4 185320153 185320153 C G IRF2 Missense_Mutation p.E204Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-XF-AAN5-01 4 187531117 187531118 - T FAT1 Nonsense_Mutation p.Y3302* 0.18 TCGA-XF-AAN5-01 4 187534472 187534473 - G FAT1 Frame_Shift_Ins p.L3085Pfs*2 0.12 TCGA-XF-AAN5-01 4 1906030 1906030 A G WHSC1 Missense_Mutation p.K229E 0.23 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 4 7043969 7043969 G T CCDC96 Missense_Mutation p.R233S 0.27 deleterious(0.01) possibly_damaging(0.691) TCGA-XF-AAN5-01 4 70918827 70918827 C G HTN1 Missense_Mutation p.L12V 0.19 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-XF-AAN5-01 5 126156751 126156751 C T LMNB1 Missense_Mutation p.S437L 0.18 deleterious(0.01) probably_damaging(0.925) TCGA-XF-AAN5-01 5 134705239 134705239 C T H2AFY Missense_Mutation p.E112K 0.19 deleterious(0.04) probably_damaging(0.995) TCGA-XF-AAN5-01 5 134782763 134782763 C T C5orf20 Silent p.S12S 0.17 TCGA-XF-AAN5-01 5 135188251 135188251 G T SLC25A48 Splice_Site p.X55_splice 0.24 TCGA-XF-AAN5-01 5 135601982 135601982 T G TRPC7 Missense_Mutation p.Y424S 0.25 tolerated(0.1) benign(0.001) TCGA-XF-AAN5-01 5 135692793 135692793 C T TRPC7 Missense_Mutation p.E95K 0.14 tolerated(0.14) possibly_damaging(0.67) TCGA-XF-AAN5-01 5 137518338 137518338 G A KIF20A Missense_Mutation p.G193D 0.09 tolerated(0.19) benign(0.015) TCGA-XF-AAN5-01 5 137726903 137726903 C A KDM3B Missense_Mutation p.Q528K 0.28 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-XF-AAN5-01 5 140203412 140203412 C T PCDHA5 Silent p.G684G 0.26 TCGA-XF-AAN5-01 5 140209293 140209293 C T PCDHA6 Silent p.D539D 0.25 TCGA-XF-AAN5-01 5 140517078 140517078 T C PCDHB5 Missense_Mutation p.Y688H 0.25 deleterious_low_confidence(0.03) benign(0.144) TCGA-XF-AAN5-01 5 140720341 140720341 C T PCDHGA2 Silent p.N601N 0.28 TCGA-XF-AAN5-01 5 140856200 140856200 G A PCDHGC3 Missense_Mutation p.E173K 0.19 tolerated(0.25) possibly_damaging(0.577) TCGA-XF-AAN5-01 5 145502111 145502111 C G LARS Missense_Mutation p.D1046H 0.25 deleterious(0.01) benign(0.027) TCGA-XF-AAN5-01 5 150411896 150411896 G T TNIP1 Missense_Mutation p.Q610K 0.14 deleterious_low_confidence(0.04) probably_damaging(0.968) TCGA-XF-AAN5-01 5 150441747 150441747 G C TNIP1 Missense_Mutation p.P100A 0.24 tolerated(0.15) benign(0.002) TCGA-XF-AAN5-01 5 52344486 52344486 C G ITGA2 Silent p.L172L 0.28 TCGA-XF-AAN5-01 5 59064365 59064365 G C PDE4D Intron 0.30 TCGA-XF-AAN5-01 5 72151662 72151662 G C TNPO1 Missense_Mutation p.Q89H 0.20 tolerated(0.33) benign(0) TCGA-XF-AAN5-01 5 72469436 72469436 C T TMEM174 Silent p.F122F 0.23 TCGA-XF-AAN5-01 5 79441966 79441966 G A SERINC5 Silent p.F395F 0.14 TCGA-XF-AAN5-01 5 94861310 94861310 G T TTC37 Nonsense_Mutation p.S401* 0.26 TCGA-XF-AAN5-01 6 10586763 10586763 G C GCNT2 Intron 0.29 TCGA-XF-AAN5-01 6 131277388 131277388 G T EPB41L2 Missense_Mutation p.P80T 0.20 tolerated(0.2) probably_damaging(0.991) TCGA-XF-AAN5-01 6 136597038 136597038 G C BCLAF1 Missense_Mutation p.S542C 0.15 deleterious(0.02) possibly_damaging(0.843) TCGA-XF-AAN5-01 6 151686828 151686828 G C ZBTB2 Missense_Mutation p.S458C 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.819) TCGA-XF-AAN5-01 6 154732250 154732250 C T CNKSR3 Missense_Mutation p.G366E 0.28 tolerated(0.62) benign(0.16) TCGA-XF-AAN5-01 6 159188083 159188083 G A EZR Nonsense_Mutation p.R542* 0.26 TCGA-XF-AAN5-01 6 18122076 18122076 A G NHLRC1 Silent p.T254T 0.15 TCGA-XF-AAN5-01 6 29012688 29012688 C G OR2W1 Missense_Mutation p.D89H 0.22 deleterious(0.03) benign(0.01) TCGA-XF-AAN5-01 6 30071884 30071884 G C TRIM31 Missense_Mutation p.S340C 0.23 tolerated(0.08) benign(0.326) TCGA-XF-AAN5-01 6 32036316 32036316 C G TNXB Missense_Mutation p.G2024A 0.30 benign(0.04) TCGA-XF-AAN5-01 6 32410273 32410273 C T HLA-DRA Missense_Mutation p.S44L 0.19 deleterious(0.01) benign(0.015) TCGA-XF-AAN5-01 6 32725587 32725587 G A HLA-DQB2 Intron 0.33 TCGA-XF-AAN5-01 6 33244009 33244009 G C RPS18 Missense_Mutation p.K116N 0.15 deleterious(0.01) possibly_damaging(0.89) TCGA-XF-AAN5-01 6 39563915 39563915 G A KIF6 Missense_Mutation p.S254L 0.13 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 6 44254250 44254250 C G TCTE1 Missense_Mutation p.Q99H 0.22 tolerated(0.33) benign(0.008) TCGA-XF-AAN5-01 6 54173587 54173587 T C TINAG Missense_Mutation p.L80S 0.26 deleterious(0) benign(0.309) TCGA-XF-AAN5-01 6 88853780 88853780 C T CNR1 Missense_Mutation p.R405Q 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-XF-AAN5-01 7 107594060 107594060 G C LAMB1 Silent p.L998L 0.39 TCGA-XF-AAN5-01 7 107594154 107594154 G T LAMB1 Nonsense_Mutation p.S967* 0.40 TCGA-XF-AAN5-01 7 12728200 12728200 G A ARL4A Silent p.R107R 0.40 TCGA-XF-AAN5-01 7 127983807 127983807 G A RBM28 Missense_Mutation p.S14L 0.18 deleterious(0) possibly_damaging(0.764) TCGA-XF-AAN5-01 7 128355598 128355598 G A FAM71F1 Missense_Mutation p.E35K 0.36 tolerated_low_confidence(0.79) benign(0.015) TCGA-XF-AAN5-01 7 134891901 134891901 G C WDR91 Missense_Mutation p.Q189E 0.11 tolerated(0.28) benign(0.01) TCGA-XF-AAN5-01 7 143807033 143807033 G A OR2A2 Missense_Mutation p.D120N 0.15 deleterious(0) probably_damaging(0.988) TCGA-XF-AAN5-01 7 149477916 149477916 G A SSPO RNA 0.17 TCGA-XF-AAN5-01 7 150773875 150773875 G C FASTK Silent p.L529L 0.25 TCGA-XF-AAN5-01 7 21934407 21934407 T C DNAH11 Missense_Mutation p.L4313P 0.43 probably_damaging(1) TCGA-XF-AAN5-01 7 23183567 23183567 C G KLHL7 Nonsense_Mutation p.S239* 0.48 TCGA-XF-AAN5-01 7 26232149 26232149 C T HNRNPA2B1 Missense_Mutation p.R350K 0.35 tolerated_low_confidence(0.29) benign(0.02) TCGA-XF-AAN5-01 7 26386037 26386037 C T SNX10 Intron 0.20 TCGA-XF-AAN5-01 7 45148632 45148632 C T TBRG4 Missense_Mutation p.E69K 0.14 tolerated(0.22) benign(0.018) TCGA-XF-AAN5-01 7 47408374 47408374 G A TNS3 Silent p.V623V 0.39 TCGA-XF-AAN5-01 7 48316034 48316034 G T ABCA13 Silent p.L2257L 0.17 TCGA-XF-AAN5-01 7 48353826 48353826 C G ABCA13 Intron 0.29 TCGA-XF-AAN5-01 7 6441986 6441986 G A RAC1 Missense_Mutation p.R182Q 0.49 tolerated(0.09) benign(0.042) TCGA-XF-AAN5-01 7 6730897 6730897 G A ZNF12 Missense_Mutation p.S559F 0.18 tolerated(0.32) probably_damaging(1) TCGA-XF-AAN5-01 7 71252747 71252747 T C CALN1 3'UTR 0.48 TCGA-XF-AAN5-01 7 72410419 72410419 C G POM121 Missense_Mutation p.S227W 0.29 tolerated(0.24) probably_damaging(0.959) TCGA-XF-AAN5-01 7 72985536 72985536 G A TBL2 Silent p.F287F 0.50 TCGA-XF-AAN5-01 7 75145115 75145115 C G Y_RNA 5'Flank 0.12 TCGA-XF-AAN5-01 7 75145501 75145501 C T Y_RNA 5'Flank 0.24 TCGA-XF-AAN5-01 7 77885265 77885265 C G MAGI2 Missense_Mutation p.R681P 0.10 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN5-01 7 87049354 87049354 C T ABCB4 Missense_Mutation p.R785K 0.21 tolerated(1) benign(0.001) TCGA-XF-AAN5-01 7 87407138 87407138 C A RUNDC3B Missense_Mutation p.L292I 0.50 deleterious(0.01) benign(0.391) TCGA-XF-AAN5-01 7 92733362 92733362 G C SAMD9 Missense_Mutation p.F683L 0.16 deleterious(0) probably_damaging(0.989) TCGA-XF-AAN5-01 7 97788696 97788696 G C LMTK2 Missense_Mutation p.E206Q 0.18 deleterious(0.02) possibly_damaging(0.777) TCGA-XF-AAN5-01 8 103291096 103291096 C T UBR5 Silent p.G2082G 0.39 TCGA-XF-AAN5-01 8 105368467 105368467 C T DCSTAMP 3'UTR 0.58 TCGA-XF-AAN5-01 8 117868915 117868915 C A RAD21 Missense_Mutation p.D262Y 0.47 deleterious(0) benign(0.423) TCGA-XF-AAN5-01 8 121216077 121216077 C G COL14A1 Missense_Mutation p.S336C 0.26 deleterious(0.03) benign(0.443) TCGA-XF-AAN5-01 8 124801928 124801928 C G FAM91A1 Missense_Mutation p.L452V 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-XF-AAN5-01 8 133898888 133898888 C T TG Missense_Mutation p.P424L 0.28 tolerated(0.14) benign(0.009) TCGA-XF-AAN5-01 8 17422581 17422581 A T SLC7A2 Missense_Mutation p.I675F 0.16 tolerated(0.82) benign(0.003) TCGA-XF-AAN5-01 8 195300 195300 G A ZNF596 Nonsense_Mutation p.W151* 0.25 TCGA-XF-AAN5-01 8 22332573 22332573 G A PPP3CC Silent p.L52L 0.11 TCGA-XF-AAN5-01 8 23049303 23049303 C G TNFRSF10A Missense_Mutation p.E437D 0.31 tolerated(0.1) probably_damaging(0.929) TCGA-XF-AAN5-01 8 26722154 26722154 G A ADRA1A Silent p.T111T 0.21 TCGA-XF-AAN5-01 8 32505696 32505696 C G NRG1 Intron 0.25 TCGA-XF-AAN5-01 8 56986656 56986656 G A RPS20 Silent p.I22I 0.50 TCGA-XF-AAN5-01 8 68334800 68334800 C A CPA6 Missense_Mutation p.C418F 0.41 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 8 99440705 99440705 C T KCNS2 Silent p.L166L 0.24 TCGA-XF-AAN5-01 9 101908873 101908873 C T TGFBR1 Nonsense_Mutation p.R413* 0.15 TCGA-XF-AAN5-01 9 120475509 120475509 C A TLR4 Nonsense_Mutation p.S368* 0.48 TCGA-XF-AAN5-01 9 127570148 127570148 G A OLFML2A Missense_Mutation p.M419I 0.56 deleterious(0) benign(0.072) TCGA-XF-AAN5-01 9 137801707 137801707 C G FCN1 Missense_Mutation p.W306C 0.67 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 9 139983355 139983355 G A MAN1B1 Missense_Mutation p.M121I 0.65 tolerated(0.53) benign(0.005) TCGA-XF-AAN5-01 9 15920369 15920369 G C CCDC171 Missense_Mutation p.L1234F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAN5-01 9 19058349 19058349 G C HAUS6 Missense_Mutation p.P806A 0.20 tolerated(0.19) possibly_damaging(0.544) TCGA-XF-AAN5-01 9 19089537 19089537 C G HAUS6 Missense_Mutation p.E153Q 0.30 deleterious(0.02) benign(0.203) TCGA-XF-AAN5-01 9 74825605 74825605 G C GDA Missense_Mutation p.R129S 0.60 tolerated(0.12) benign(0.33) TCGA-XF-AAN5-01 9 96021516 96021516 G T WNK2 Missense_Mutation p.A896S 0.45 probably_damaging(0.968) TCGA-XF-AAN5-01 X 123190006 123190006 G C STAG2 Missense_Mutation p.D409H 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 X 125299030 125299030 C A DCAF12L2 Missense_Mutation p.S293I 0.25 tolerated(0.06) possibly_damaging(0.812) TCGA-XF-AAN5-01 X 135488065 135488065 T - GPR112 Frame_Shift_Del p.F2958Lfs*6 0.18 TCGA-XF-AAN5-01 X 136649666 136649666 C T ZIC3 Silent p.F272F 0.11 TCGA-XF-AAN5-01 X 137715050 137715050 C A FGF13 Silent p.L243L 0.23 TCGA-XF-AAN5-01 X 13791096 13791096 G T GPM6B Missense_Mutation p.S297R 0.25 tolerated(0.29) possibly_damaging(0.542) TCGA-XF-AAN5-01 X 149901029 149901029 C T MTMR1 Missense_Mutation p.H295Y 0.18 deleterious(0) possibly_damaging(0.808) TCGA-XF-AAN5-01 X 153577882 153577882 A G FLNA Missense_Mutation p.V2535A 0.26 deleterious(0) benign(0.259) TCGA-XF-AAN5-01 X 154493369 154493369 C T RAB39B Missense_Mutation p.E69K 0.27 deleterious(0) benign(0.241) TCGA-XF-AAN5-01 X 154493423 154493423 C T RAB39B Missense_Mutation p.E51K 0.25 deleterious(0.01) possibly_damaging(0.804) TCGA-XF-AAN5-01 X 221792 221792 G A GTPBP6 Silent p.V271V 0.17 TCGA-XF-AAN5-01 X 3573363 3573363 C A PRKX Silent p.G142G 0.15 TCGA-XF-AAN5-01 X 41413129 41413129 C T CASK Missense_Mutation p.D628N 0.20 deleterious(0) probably_damaging(1) TCGA-XF-AAN5-01 X 70517696 70517696 G C NONO Missense_Mutation p.E347Q 0.31 tolerated(0.11) benign(0.245) TCGA-XF-AAN5-01 X 70517719 70517719 G A NONO Silent p.E354E 0.26 TCGA-XF-AAN7-01 10 117823915 117823915 T A GFRA1 Silent p.T464T 0.50 TCGA-XF-AAN7-01 10 14976434 14976434 G T DCLRE1C Missense_Mutation p.A208E 0.88 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN7-01 10 56077124 56077124 C A PCDH15 Missense_Mutation p.L261F 0.33 tolerated(0.07) probably_damaging(0.991) TCGA-XF-AAN7-01 10 77542779 77542779 A G C10orf11 Missense_Mutation p.R16G 0.42 deleterious(0) benign(0.135) TCGA-XF-AAN7-01 10 95335856 95335856 G T FFAR4 Silent p.S192S 0.45 TCGA-XF-AAN7-01 11 123598842 123598842 C T ZNF202 Silent p.L277L 0.25 TCGA-XF-AAN7-01 11 24750811 24750811 T A LUZP2 Missense_Mutation p.D53E 0.50 tolerated(0.47) benign(0.131) TCGA-XF-AAN7-01 11 30557632 30557632 G C MPPED2 Missense_Mutation p.I73M 0.40 tolerated(0.19) benign(0.322) TCGA-XF-AAN7-01 11 34475441 34475441 G A CAT Missense_Mutation p.G227R 0.10 deleterious(0.02) probably_damaging(0.921) TCGA-XF-AAN7-01 11 4967484 4967484 G A OR51A4 Missense_Mutation p.L283F 0.56 tolerated(0.07) possibly_damaging(0.739) TCGA-XF-AAN7-01 11 5410783 5410783 C T OR51M1 Missense_Mutation p.S52L 0.26 tolerated(0.82) benign(0.008) TCGA-XF-AAN7-01 11 55111034 55111034 C T OR4A16 Missense_Mutation p.R120C 0.51 tolerated_low_confidence(0.05) benign(0.082) TCGA-XF-AAN7-01 11 55111035 55111035 G T OR4A16 Missense_Mutation p.R120L 0.51 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-XF-AAN7-01 11 55371698 55371698 C A OR4C11 Missense_Mutation p.R51L 0.34 tolerated(0.06) benign(0.006) TCGA-XF-AAN7-01 11 56086363 56086363 A T OR8K3 Missense_Mutation p.E194V 0.28 deleterious_low_confidence(0.01) benign(0.435) TCGA-XF-AAN7-01 11 6024215 6024215 G A OR56A4 Missense_Mutation p.S55F 0.38 deleterious(0) benign(0.381) TCGA-XF-AAN7-01 11 60785403 60785403 C T CD6 Silent p.P585P 0.37 TCGA-XF-AAN7-01 11 64536777 64536777 G C SF1 Missense_Mutation p.P358A 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-XF-AAN7-01 11 65113518 65113518 G A DPF2 Missense_Mutation p.C298Y 0.55 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 11 65396367 65396367 G A PCNXL3 Missense_Mutation p.V1297I 0.38 tolerated(1) benign(0.037) TCGA-XF-AAN7-01 11 65714977 65714977 G A TSGA10IP RNA 0.33 TCGA-XF-AAN7-01 11 65793342 65793342 C T CATSPER1 Missense_Mutation p.G170D 0.27 tolerated(0.28) benign(0.018) TCGA-XF-AAN7-01 11 76982212 76982212 C T GDPD4 Nonsense_Mutation p.W121* 0.29 TCGA-XF-AAN7-01 11 7817833 7817833 G A OR5P2 Silent p.I219I 0.33 TCGA-XF-AAN7-01 11 92533569 92533569 C T FAT3 Silent p.L2464L 0.34 TCGA-XF-AAN7-01 12 109907509 109907509 C A KCTD10 Missense_Mutation p.V10L 0.97 tolerated_low_confidence(1) unknown(0) TCGA-XF-AAN7-01 12 132425976 132425976 G T PUS1 Silent p.T228T 0.92 TCGA-XF-AAN7-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.88 deleterious(0) benign(0.361) TCGA-XF-AAN7-01 12 44781841 44781841 G A TMEM117 Missense_Mutation p.V311I 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-XF-AAN7-01 12 57588202 57588202 C T LRP1 Missense_Mutation p.R2662W 0.85 possibly_damaging(0.636) TCGA-XF-AAN7-01 12 6078430 6078430 G A VWF Missense_Mutation p.S2559L 0.54 tolerated(1) benign(0.001) TCGA-XF-AAN7-01 12 64827251 64827251 G C XPOT Missense_Mutation p.E774Q 0.53 tolerated(0.32) benign(0.177) TCGA-XF-AAN7-01 12 95676322 95676322 G T VEZT Silent p.P410P 0.40 TCGA-XF-AAN7-01 13 113771910 113771910 G A F7 Missense_Mutation p.G269S 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 13 32527085 32527085 C T EEF1DP3 RNA 0.19 TCGA-XF-AAN7-01 13 33110833 33110833 G A N4BP2L2 Intron 0.27 TCGA-XF-AAN7-01 13 49047507 49047507 C A RB1 Nonsense_Mutation p.S834* 0.85 TCGA-XF-AAN7-01 13 52646135 52646135 C T NEK5 Silent p.K623K 0.89 TCGA-XF-AAN7-01 13 86368219 86368219 T G SLITRK6 Silent p.R809R 0.06 TCGA-XF-AAN7-01 13 92101083 92101083 C G GPC5 Missense_Mutation p.Q78E 0.37 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN7-01 13 95121268 95121268 G C DCT Missense_Mutation p.C109W 0.23 deleterious(0) probably_damaging(0.957) TCGA-XF-AAN7-01 14 106091475 106091475 G A IGHG4 Missense_Mutation p.T140M 0.20 deleterious(0.05) possibly_damaging(0.671) TCGA-XF-AAN7-01 14 20216309 20216309 T C OR4Q3 Silent p.C241C 0.55 TCGA-XF-AAN7-01 14 58738603 58738603 A G PSMA3 Missense_Mutation p.D253G 0.51 deleterious(0.04) benign(0.006) TCGA-XF-AAN7-01 14 59014515 59014515 A T KIAA0586 Missense_Mutation p.T1586S 0.35 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-XF-AAN7-01 14 78392226 78392226 G A ADCK1 Silent p.L376L 0.30 TCGA-XF-AAN7-01 14 96986411 96986411 T C PAPOLA Missense_Mutation p.S10P 0.27 tolerated(0.06) benign(0.003) TCGA-XF-AAN7-01 15 22473112 22473112 C T IGHV4OR15-8 Nonsense_Mutation p.W53* 0.20 TCGA-XF-AAN7-01 15 45847806 45847806 C T RP11-96O20.2 5'Flank 0.18 TCGA-XF-AAN7-01 15 54306190 54306190 G T UNC13C Nonsense_Mutation p.G364* 0.29 TCGA-XF-AAN7-01 15 87217539 87217539 G A AGBL1 Missense_Mutation p.M985I 0.62 deleterious(0) possibly_damaging(0.512) TCGA-XF-AAN7-01 15 89195441 89195441 C G ISG20 Missense_Mutation p.T110R 0.23 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 15 92671660 92671661 GT - SLCO3A1 Frame_Shift_Del p.C486Wfs*32 0.26 TCGA-XF-AAN7-01 16 21716401 21716401 C G OTOA Intron 0.44 TCGA-XF-AAN7-01 16 27353500 27353500 T G IL4R Silent p.T43T 0.45 TCGA-XF-AAN7-01 16 28842303 28842303 A G ATXN2L Missense_Mutation p.K411E 0.35 deleterious(0.05) probably_damaging(0.987) TCGA-XF-AAN7-01 16 30079970 30079970 G A ALDOA Missense_Mutation p.D164N 0.19 deleterious(0) probably_damaging(0.991) TCGA-XF-AAN7-01 16 30080179 30080179 G A ALDOA Silent p.K194K 0.17 TCGA-XF-AAN7-01 16 49672639 49672639 A G ZNF423 Missense_Mutation p.F142L 0.69 deleterious(0.01) probably_damaging(0.962) TCGA-XF-AAN7-01 16 630957 630957 C A PIGQ Missense_Mutation p.P506T 0.29 deleterious(0) probably_damaging(0.974) TCGA-XF-AAN7-01 16 67654639 67654639 G T CTCF Nonsense_Mutation p.E376* 0.47 TCGA-XF-AAN7-01 16 85954951 85954951 C A IRF8 3'UTR 0.42 TCGA-XF-AAN7-01 16 87451233 87451233 C T ZCCHC14 Missense_Mutation p.G269S 0.29 tolerated(0.24) benign(0.259) TCGA-XF-AAN7-01 17 10409224 10409224 G A MYH1 Silent p.V693V 0.29 TCGA-XF-AAN7-01 17 20805637 20805637 G A RP11-344E13.3 RNA 0.55 TCGA-XF-AAN7-01 17 35818684 35818684 A - TADA2A Frame_Shift_Del p.I224Lfs*2 0.29 TCGA-XF-AAN7-01 17 38793753 38793753 G C SMARCE1 Nonsense_Mutation p.Y76* 0.39 TCGA-XF-AAN7-01 17 39521101 39521101 G T KRT33B Missense_Mutation p.L343M 0.56 deleterious(0.04) possibly_damaging(0.872) TCGA-XF-AAN7-01 17 44111567 44111567 G A KANSL1 Missense_Mutation p.R876C 0.45 deleterious(0) possibly_damaging(0.765) TCGA-XF-AAN7-01 17 48245335 48245335 G A SGCA Missense_Mutation p.D114N 0.25 deleterious(0.03) benign(0.098) TCGA-XF-AAN7-01 17 51902194 51902194 A G KIF2B Silent p.T600T 0.65 TCGA-XF-AAN7-01 17 55065149 55065149 A G SCPEP1 Missense_Mutation p.M137V 0.40 tolerated(0.11) benign(0.008) TCGA-XF-AAN7-01 17 57941183 57941183 A C TUBD1 Nonsense_Mutation p.Y367* 0.19 TCGA-XF-AAN7-01 17 61899468 61899468 G A FTSJ3 Missense_Mutation p.P451S 0.32 tolerated(0.23) probably_damaging(0.962) TCGA-XF-AAN7-01 17 72322461 72322461 G A KIF19 5'UTR 0.38 TCGA-XF-AAN7-01 17 7578449 7578449 C T TP53 Missense_Mutation p.A161T 0.91 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 17 79618705 79618705 C T PDE6G Missense_Mutation p.D53N 0.73 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-XF-AAN7-01 18 48593467 48593467 G T SMAD4 Silent p.A406A 0.57 TCGA-XF-AAN7-01 19 10132349 10132349 G A RDH8 Missense_Mutation p.R307H 0.22 tolerated(0.21) benign(0.008) TCGA-XF-AAN7-01 19 10754004 10754004 G A SLC44A2 Missense_Mutation p.M688I 0.16 tolerated(0.1) probably_damaging(0.94) TCGA-XF-AAN7-01 19 11040268 11040268 G T C19orf52 Missense_Mutation p.D225Y 0.42 deleterious(0) possibly_damaging(0.838) TCGA-XF-AAN7-01 19 11941125 11941125 G A ZNF440 Missense_Mutation p.V11M 0.14 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN7-01 19 12126543 12126543 G C ZNF433 Nonsense_Mutation p.S380* 0.29 TCGA-XF-AAN7-01 19 1271439 1271439 C T CIRBP Nonsense_Mutation p.R108* 0.29 TCGA-XF-AAN7-01 19 23544628 23544628 T C ZNF91 Missense_Mutation p.K385E 0.30 deleterious(0.01) possibly_damaging(0.477) TCGA-XF-AAN7-01 19 36122298 36122298 C T RBM42 Missense_Mutation p.R145W 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-XF-AAN7-01 19 44933172 44933172 G A ZNF229 Missense_Mutation p.T595M 0.52 deleterious(0.05) probably_damaging(0.999) TCGA-XF-AAN7-01 19 48601497 48601497 G C PLA2G4C Missense_Mutation p.S166C 0.38 deleterious(0) probably_damaging(0.99) TCGA-XF-AAN7-01 19 50412023 50412023 C T NUP62 Missense_Mutation p.E348K 0.17 deleterious(0) possibly_damaging(0.907) TCGA-XF-AAN7-01 19 53958479 53958479 G A ZNF761 RNA 0.27 TCGA-XF-AAN7-01 19 55648496 55648496 C A TNNT1 Missense_Mutation p.D196Y 0.32 deleterious(0) probably_damaging(0.956) TCGA-XF-AAN7-01 19 57932473 57932473 A T ZNF17 Missense_Mutation p.N538I 0.40 deleterious(0.05) benign(0.307) TCGA-XF-AAN7-01 19 6686289 6686289 C T C3 Missense_Mutation p.R1219H 0.48 tolerated(0.92) benign(0.011) TCGA-XF-AAN7-01 1 10166611 10166611 G A UBE4B Missense_Mutation p.R389K 0.21 tolerated_low_confidence(0.94) benign(0.039) TCGA-XF-AAN7-01 1 150123102 150123102 G A PLEKHO1 Missense_Mutation p.G11R 0.72 deleterious(0) possibly_damaging(0.71) TCGA-XF-AAN7-01 1 158655100 158655100 G T SPTA1 Missense_Mutation p.A21E 0.78 deleterious(0.01) possibly_damaging(0.897) TCGA-XF-AAN7-01 1 165513716 165513716 C T LRRC52 Silent p.N61N 0.71 TCGA-XF-AAN7-01 1 181732633 181732633 G A CACNA1E Missense_Mutation p.R1594H 0.73 deleterious(0) possibly_damaging(0.812) TCGA-XF-AAN7-01 1 228336153 228336153 C T GUK1 Intron 0.44 TCGA-XF-AAN7-01 1 233515349 233515349 C T MLK4 Missense_Mutation p.P866L 0.62 deleterious(0.03) benign(0.085) TCGA-XF-AAN7-01 1 243329214 243329214 G A CEP170 Missense_Mutation p.P683L 0.38 tolerated(0.09) possibly_damaging(0.493) TCGA-XF-AAN7-01 1 244006516 244006516 G A AKT3 5'UTR 0.40 TCGA-XF-AAN7-01 1 27101317 27101317 G A ARID1A Silent p.L1533L 0.32 TCGA-XF-AAN7-01 1 40131797 40131797 G A NT5C1A Nonsense_Mutation p.Q83* 0.25 TCGA-XF-AAN7-01 1 43825014 43825014 T A CDC20 Missense_Mutation p.M43K 0.54 tolerated(0.9) benign(0.002) TCGA-XF-AAN7-01 1 57425832 57425832 G A C8B Missense_Mutation p.S37F 0.17 tolerated(0.73) benign(0.004) TCGA-XF-AAN7-01 1 67450473 67450473 A G MIER1 Missense_Mutation p.K530E 0.59 deleterious(0) probably_damaging(0.997) TCGA-XF-AAN7-01 20 31671336 31671336 C T BPIFB4 Silent p.S111S 0.40 TCGA-XF-AAN7-01 20 49575366 49575366 C T MOCS3 5'UTR 0.27 TCGA-XF-AAN7-01 20 52198675 52198675 G C ZNF217 Missense_Mutation p.L231V 0.27 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN7-01 20 58441364 58441364 A G SYCP2 Missense_Mutation p.L1435S 0.43 deleterious(0) probably_damaging(0.925) TCGA-XF-AAN7-01 20 61485440 61485440 C T TCFL5 Silent p.K436K 0.18 TCGA-XF-AAN7-01 21 36171672 36171672 G - RUNX1 Frame_Shift_Del p.P298Qfs*13 0.41 TCGA-XF-AAN7-01 22 46654275 46654275 A G PKDREJ Missense_Mutation p.W1649R 0.32 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 2 121708942 121708942 G - GLI2 Frame_Shift_Del p.E127Sfs*15 0.29 TCGA-XF-AAN7-01 2 136570336 136570336 T A LCT Missense_Mutation p.H633L 0.24 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN7-01 2 148677883 148677883 T G ACVR2A Silent p.A349A 0.16 TCGA-XF-AAN7-01 2 179330542 179330542 G A FKBP7 Silent p.F208F 0.47 TCGA-XF-AAN7-01 2 185800965 185800965 C T ZNF804A Missense_Mutation p.P281L 0.33 tolerated(0.4) probably_damaging(0.996) TCGA-XF-AAN7-01 2 197777697 197777697 C T PGAP1 Silent p.L186L 0.43 TCGA-XF-AAN7-01 2 203589705 203589705 T C FAM117B Silent p.S273S 0.60 TCGA-XF-AAN7-01 2 207171548 207171548 C T ZDBF2 Missense_Mutation p.H766Y 0.53 deleterious(0.03) benign(0.031) TCGA-XF-AAN7-01 2 3197798 3197798 C T TSSC1 Missense_Mutation p.V265M 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-XF-AAN7-01 2 44428930 44428931 - T PPM1B Frame_Shift_Ins p.S199Ifs*8 0.40 TCGA-XF-AAN7-01 2 61719260 61719260 G A XPO1 Silent p.F599F 0.27 TCGA-XF-AAN7-01 2 69172542 69172542 C T GKN2 Silent p.L171L 0.33 TCGA-XF-AAN7-01 2 72968484 72968484 C T EXOC6B Silent p.V76V 0.58 TCGA-XF-AAN7-01 3 173997299 173997299 C T NLGN1 Missense_Mutation p.A503V 0.21 deleterious(0) probably_damaging(0.979) TCGA-XF-AAN7-01 3 194062459 194062459 T C CPN2 Missense_Mutation p.I325V 0.30 deleterious(0.01) possibly_damaging(0.478) TCGA-XF-AAN7-01 3 46945205 46945205 G A PTH1R 3'UTR 0.67 TCGA-XF-AAN7-01 3 69105208 69105208 C T UBA3 Missense_Mutation p.M397I 0.29 tolerated(0.34) benign(0.252) TCGA-XF-AAN7-01 3 9883915 9883915 G A RPUSD3 Missense_Mutation p.T92M 0.56 deleterious(0.01) benign(0.251) TCGA-XF-AAN7-01 4 105412035 105412035 C T CXXC4 Missense_Mutation p.G309R 0.46 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 4 119256645 119256645 G A PRSS12 Missense_Mutation p.T268M 0.27 tolerated(0.17) benign(0.066) TCGA-XF-AAN7-01 4 156631759 156631759 G A GUCY1A3 Missense_Mutation p.D148N 0.26 tolerated(0.89) benign(0.079) TCGA-XF-AAN7-01 4 183676361 183676361 G T TENM3 Missense_Mutation p.S1614I 0.20 deleterious(0) possibly_damaging(0.589) TCGA-XF-AAN7-01 4 185697725 185697725 G A ACSL1 Silent p.I223I 0.55 TCGA-XF-AAN7-01 4 437993 437993 T C ZNF721 Missense_Mutation p.K88R 0.38 deleterious(0.03) benign(0.23) TCGA-XF-AAN7-01 4 48501604 48501604 C T FRYL Silent p.Q2959Q 0.56 TCGA-XF-AAN7-01 4 83987699 83987699 C T COPS4 Missense_Mutation p.A332V 0.45 tolerated(0.07) benign(0.01) TCGA-XF-AAN7-01 5 139722233 139722233 C - HBEGF Frame_Shift_Del p.A129Lfs*18 0.35 TCGA-XF-AAN7-01 5 140209203 140209203 G A PCDHA6 Silent p.S509S 0.37 TCGA-XF-AAN7-01 5 141335655 141335655 G T PCDH12 Missense_Mutation p.L588M 0.65 tolerated(0.06) probably_damaging(0.959) TCGA-XF-AAN7-01 5 43543124 43543124 C G PAIP1 Missense_Mutation p.R239P 0.06 deleterious(0) probably_damaging(0.981) TCGA-XF-AAN7-01 5 50058990 50058990 T C PARP8 Silent p.Y144Y 0.35 TCGA-XF-AAN7-01 5 50118184 50118184 C A PARP8 Silent p.R604R 0.37 TCGA-XF-AAN7-01 5 74715207 74715207 T C COL4A3BP Missense_Mutation p.D341G 0.58 deleterious(0.01) benign(0.281) TCGA-XF-AAN7-01 6 100841481 100841481 G A SIM1 Silent p.A484A 0.59 TCGA-XF-AAN7-01 6 119285899 119285899 C A FAM184A Missense_Mutation p.R1024L 0.33 deleterious(0) probably_damaging(0.998) TCGA-XF-AAN7-01 6 130399753 130399753 A G L3MBTL3 Missense_Mutation p.H432R 0.17 tolerated(0.56) probably_damaging(0.94) TCGA-XF-AAN7-01 6 132203595 132203595 C T ENPP1 Silent p.Y737Y 0.57 TCGA-XF-AAN7-01 6 137468932 137468932 T C IL22RA2 Missense_Mutation p.E190G 0.32 tolerated(1) benign(0.001) TCGA-XF-AAN7-01 6 169632246 169632246 G A THBS2 Silent p.H660H 0.52 TCGA-XF-AAN7-01 6 41001721 41001721 G A UNC5CL Silent p.S195S 0.16 TCGA-XF-AAN7-01 6 41001769 41001769 G C UNC5CL Silent p.L179L 0.29 TCGA-XF-AAN7-01 6 47471034 47471034 A G CD2AP Missense_Mutation p.Y8C 0.56 deleterious(0) possibly_damaging(0.886) TCGA-XF-AAN7-01 6 80228608 80228608 C T LCA5 Missense_Mutation p.G2R 0.21 deleterious(0) probably_damaging(0.932) TCGA-XF-AAN7-01 7 100246437 100246437 G A ACTL6B Silent p.N159N 0.33 TCGA-XF-AAN7-01 7 135307615 135307615 G A NUP205 Missense_Mutation p.G1474D 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAN7-01 7 150835314 150835314 G A AGAP3 Missense_Mutation p.G527E 0.38 tolerated(0.07) benign(0.382) TCGA-XF-AAN7-01 7 2412383 2412383 C A EIF3B Missense_Mutation p.S588Y 0.23 deleterious(0.01) probably_damaging(0.934) TCGA-XF-AAN7-01 7 44118382 44118382 T C POLM Missense_Mutation p.E224G 0.19 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 7 6438291 6438291 A G RAC1 Splice_Site p.X76_splice 0.13 TCGA-XF-AAN7-01 7 73791126 73791126 G A CLIP2 Missense_Mutation p.A799T 0.38 tolerated(0.32) benign(0.007) TCGA-XF-AAN7-01 7 82584296 82584296 T A PCLO Missense_Mutation p.Q1991H 0.28 unknown(0) TCGA-XF-AAN7-01 7 84644468 84644468 T A SEMA3D Missense_Mutation p.Y537F 0.67 deleterious(0.01) probably_damaging(0.972) TCGA-XF-AAN7-01 7 91502882 91502882 C T MTERF 3'UTR 0.36 TCGA-XF-AAN7-01 7 99250249 99250249 C T CYP3A5 Missense_Mutation p.V394M 0.73 deleterious(0.02) possibly_damaging(0.891) TCGA-XF-AAN7-01 8 121292248 121292248 G A COL14A1 Missense_Mutation p.A1186T 0.15 deleterious(0.04) benign(0.014) TCGA-XF-AAN7-01 8 131955663 131955663 G C ADCY8 Silent p.T429T 0.50 TCGA-XF-AAN7-01 8 25327416 25327416 C T CDCA2 Missense_Mutation p.S247L 0.56 tolerated(0.26) benign(0.188) TCGA-XF-AAN7-01 8 52321900 52321900 G A PXDNL Missense_Mutation p.R762C 0.73 deleterious(0.01) possibly_damaging(0.806) TCGA-XF-AAN7-01 8 59852047 59852047 A T TOX Silent p.P75P 0.11 TCGA-XF-AAN7-01 8 67342408 67342409 GG - RRS1 Frame_Shift_Del p.G348Lfs*28 0.17 TCGA-XF-AAN7-01 8 72754765 72754765 C G MSC 3'UTR 0.27 TCGA-XF-AAN7-01 8 73850120 73850120 C T KCNB2 Missense_Mutation p.P844S 0.14 tolerated_low_confidence(0.46) benign(0.001) TCGA-XF-AAN7-01 9 108483893 108483893 G C TMEM38B Silent p.S115S 0.73 TCGA-XF-AAN7-01 9 124535337 124535337 C T DAB2IP Missense_Mutation p.R816C 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-XF-AAN7-01 9 131030790 131030790 T C GOLGA2 Missense_Mutation p.N74S 0.50 tolerated(0.85) benign(0.002) TCGA-XF-AAN7-01 9 139391836 139391836 C T NOTCH1 Missense_Mutation p.V2119M 0.25 deleterious(0.01) benign(0.058) TCGA-XF-AAN7-01 9 139649756 139649756 C T LCN8 Missense_Mutation p.G121R 0.65 deleterious(0) probably_damaging(1) TCGA-XF-AAN7-01 9 140115097 140115097 G A RNF208 Missense_Mutation p.R190C 0.83 deleterious(0) possibly_damaging(0.721) TCGA-XF-AAN7-01 9 84603695 84603695 C A SPATA31D1 5'UTR 0.17 TCGA-XF-AAN7-01 9 88938792 88938792 T G ZCCHC6 Missense_Mutation p.T625P 0.12 deleterious(0) probably_damaging(0.999) TCGA-XF-AAN7-01 X 110555912 110555912 G A DCX Silent p.P409P 1.00 TCGA-XF-AAN7-01 X 134988694 134988694 G A SAGE1 Missense_Mutation p.M240I 0.88 tolerated(0.07) benign(0.002) TCGA-XF-AAN7-01 X 14622470 14622470 G A GLRA2 Silent p.L176L 0.66 TCGA-XF-AAN7-01 X 19387251 19387251 T C MAP3K15 Missense_Mutation p.T1163A 0.07 tolerated(0.77) benign(0.001) TCGA-XF-AAN7-01 X 70621439 70621439 A G TAF1 Missense_Mutation p.Y1303C 0.88 deleterious(0) probably_damaging(0.983) TCGA-XF-AAN7-01 X 76938551 76938551 C T ATRX Missense_Mutation p.E733K 0.90 benign(0.345) TCGA-XF-AAN8-01 16 70954659 70954659 T C HYDIN Silent p.R2540R 0.36 TCGA-XF-AAN8-01 17 62568009 62568009 G A SMURF2 Missense_Mutation p.T308M 0.09 deleterious(0) probably_damaging(0.989) TCGA-YC-A89H-01 10 101124191 101124191 G T CNNM1 Missense_Mutation p.E682D 0.31 deleterious(0) probably_damaging(0.96) TCGA-YC-A89H-01 10 101992904 101992904 C T CWF19L1 3'UTR 0.46 TCGA-YC-A89H-01 10 102242180 102242180 G A WNT8B Silent p.L221L 0.40 TCGA-YC-A89H-01 10 102296305 102296305 G A HIF1AN Silent p.E105E 0.34 TCGA-YC-A89H-01 10 104211275 104211275 G A C10orf95 5'UTR 0.40 TCGA-YC-A89H-01 10 104678995 104678995 T C CNNM2 Missense_Mutation p.L253P 0.28 tolerated(0.06) benign(0.383) TCGA-YC-A89H-01 10 104836820 104836820 G C CNNM2 Missense_Mutation p.L837F 0.48 tolerated(0.1) benign(0.174) TCGA-YC-A89H-01 10 105185020 105185020 G A PDCD11 Missense_Mutation p.E1015K 0.47 deleterious(0.04) possibly_damaging(0.619) TCGA-YC-A89H-01 10 105657358 105657358 G A OBFC1 Missense_Mutation p.S234F 0.38 deleterious(0.03) probably_damaging(0.99) TCGA-YC-A89H-01 10 111879014 111879014 C T ADD3 Missense_Mutation p.L255F 0.27 deleterious(0) probably_damaging(0.943) TCGA-YC-A89H-01 10 114169272 114169272 C T ACSL5 Silent p.I236I 0.27 TCGA-YC-A89H-01 10 114169284 114169284 C T ACSL5 Silent p.I240I 0.18 TCGA-YC-A89H-01 10 115636514 115636514 T A NHLRC2 Nonsense_Mutation p.L189* 0.37 TCGA-YC-A89H-01 10 119799876 119799876 G A RAB11FIP2 Missense_Mutation p.S185F 0.38 deleterious(0) probably_damaging(0.994) TCGA-YC-A89H-01 10 120095835 120095835 G T FAM204A Missense_Mutation p.N31K 0.34 tolerated(0.43) benign(0.397) TCGA-YC-A89H-01 10 123263301 123263301 C T FGFR2 Intron 0.29 TCGA-YC-A89H-01 10 123845469 123845469 G A TACC2 Missense_Mutation p.E1152K 0.23 benign(0.045) TCGA-YC-A89H-01 10 123845480 123845480 G A TACC2 Silent p.L1155L 0.24 TCGA-YC-A89H-01 10 124396641 124396641 C T DMBT1 Intron 0.37 TCGA-YC-A89H-01 10 126727647 126727647 C T CTBP2 5'UTR 0.31 TCGA-YC-A89H-01 10 127424309 127424309 G A EDRF1 Missense_Mutation p.D532N 0.31 deleterious(0) possibly_damaging(0.615) TCGA-YC-A89H-01 10 127525279 127525279 C T DHX32 Missense_Mutation p.E737K 0.36 deleterious(0.04) benign(0.391) TCGA-YC-A89H-01 10 127542672 127542672 G A DHX32 Missense_Mutation p.S317L 0.17 tolerated(0.41) benign(0) TCGA-YC-A89H-01 10 127548420 127548420 G A DHX32 Missense_Mutation p.L201F 0.43 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 10 128192820 128192820 C T C10orf90 Missense_Mutation p.E317K 0.31 tolerated(0.55) benign(0.003) TCGA-YC-A89H-01 10 13361074 13361074 C G SEPHS1 3'UTR 0.44 TCGA-YC-A89H-01 10 133784195 133784195 C T BNIP3 Silent p.L162L 0.22 TCGA-YC-A89H-01 10 135106725 135106725 G A TUBGCP2 Missense_Mutation p.S309F 0.20 deleterious(0.04) probably_damaging(0.952) TCGA-YC-A89H-01 10 13629004 13629004 C T PRPF18 5'UTR 0.42 TCGA-YC-A89H-01 10 13699030 13699030 C T FRMD4A Silent p.L853L 0.60 TCGA-YC-A89H-01 10 17686366 17686366 G A STAM Missense_Mutation p.D10N 0.17 tolerated(0.07) benign(0.036) TCGA-YC-A89H-01 10 18807291 18807291 G A CACNB2 Silent p.V277V 0.35 TCGA-YC-A89H-01 10 22675808 22675808 G A SPAG6 Missense_Mutation p.E200K 0.33 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 10 29813430 29813430 G A SVIL Nonsense_Mutation p.Q853* 0.39 TCGA-YC-A89H-01 10 33199212 33199212 G A ITGB1 Silent p.F701F 0.27 TCGA-YC-A89H-01 10 33218752 33218752 G A ITGB1 Missense_Mutation p.S125L 0.28 tolerated(0.06) benign(0.385) TCGA-YC-A89H-01 10 33619647 33619647 G A NRP1 Silent p.D79D 0.40 TCGA-YC-A89H-01 10 35929995 35929995 G A FZD8 Silent p.L121L 0.45 TCGA-YC-A89H-01 10 3823941 3823941 C T KLF6 Missense_Mutation p.D190N 0.34 deleterious(0.05) possibly_damaging(0.868) TCGA-YC-A89H-01 10 3827273 3827273 G A KLF6 5'UTR 0.50 TCGA-YC-A89H-01 10 45799433 45799433 G A OR13A1 Silent p.H146H 0.29 TCGA-YC-A89H-01 10 46959938 46959938 T C SYT15 3'Flank 0.21 TCGA-YC-A89H-01 10 48371472 48371472 G A ZNF488 Missense_Mutation p.E314K 0.28 deleterious(0.01) benign(0.157) TCGA-YC-A89H-01 10 49634019 49634019 C T MAPK8 Silent p.Y259Y 0.26 TCGA-YC-A89H-01 10 5041412 5041412 C T AKR1C2 Missense_Mutation p.D143N 0.27 tolerated(0.13) benign(0.078) TCGA-YC-A89H-01 10 52834309 52834309 C T PRKG1 5'UTR 0.38 TCGA-YC-A89H-01 10 55600179 55600179 C T PCDH15 Missense_Mutation p.G1295E 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-YC-A89H-01 10 60558877 60558877 T G BICC1 Missense_Mutation p.I530M 0.26 tolerated(0.1) possibly_damaging(0.83) TCGA-YC-A89H-01 10 61005259 61005259 G A PHYHIPL Missense_Mutation p.E347K 0.26 tolerated(0.22) benign(0.206) TCGA-YC-A89H-01 10 61552372 61552372 A C CCDC6 3'UTR 0.45 TCGA-YC-A89H-01 10 62670718 62670718 C T RHOBTB1 Missense_Mutation p.E75K 0.19 tolerated(0.13) probably_damaging(0.998) TCGA-YC-A89H-01 10 63845621 63845621 G A ARID5B Missense_Mutation p.E454K 0.25 tolerated(0.09) probably_damaging(0.952) TCGA-YC-A89H-01 10 63852474 63852474 G A ARID5B Silent p.G1084G 0.32 TCGA-YC-A89H-01 10 69832712 69832712 C T HERC4 Missense_Mutation p.D52N 0.26 tolerated(0.07) benign(0.344) TCGA-YC-A89H-01 10 69832715 69832715 C T HERC4 Missense_Mutation p.D51N 0.26 tolerated(0.33) benign(0.002) TCGA-YC-A89H-01 10 70105601 70105601 G A RUFY2 Missense_Mutation p.S617F 0.31 deleterious(0) possibly_damaging(0.755) TCGA-YC-A89H-01 10 70516155 70516155 C A CCAR1 Nonsense_Mutation p.S584* 0.33 TCGA-YC-A89H-01 10 70646055 70646055 G A STOX1 Missense_Mutation p.E835K 0.29 tolerated(0.09) benign(0.029) TCGA-YC-A89H-01 10 70928242 70928242 C T VPS26A Intron 0.33 TCGA-YC-A89H-01 10 71103636 71103636 C T HK1 Silent p.I43I 0.32 TCGA-YC-A89H-01 10 74594131 74594131 C T MCU Silent p.I55I 0.34 TCGA-YC-A89H-01 10 75290495 75290495 C T USP54 Missense_Mutation p.D472N 0.34 deleterious(0.03) possibly_damaging(0.834) TCGA-YC-A89H-01 10 75552335 75552335 G A ZSWIM8 Missense_Mutation p.E680K 0.28 tolerated_low_confidence(0.22) benign(0.188) TCGA-YC-A89H-01 10 75857015 75857015 C T VCL Silent p.F599F 0.36 TCGA-YC-A89H-01 10 76982014 76982014 G A VDAC2 Missense_Mutation p.D212N 0.31 tolerated(0.19) benign(0.024) TCGA-YC-A89H-01 10 78647264 78647264 G A KCNMA1 Silent p.I1140I 0.23 TCGA-YC-A89H-01 10 79614113 79614113 C T DLG5 Silent p.L184L 0.30 TCGA-YC-A89H-01 10 8055697 8055697 C G TAF3 Missense_Mutation p.R858G 0.31 deleterious(0.01) benign(0) TCGA-YC-A89H-01 10 8115953 8115969 CCACCCCTCCAGCATGG - GATA3 Frame_Shift_Del p.P436Rfs*66 0.20 TCGA-YC-A89H-01 10 88213043 88213043 C A WAPAL Silent p.A961A 0.31 TCGA-YC-A89H-01 10 88717329 88717329 C T MMRN2 5'UTR 0.34 TCGA-YC-A89H-01 10 89265069 89265069 G A MINPP1 Missense_Mutation p.D133N 0.25 tolerated(0.69) benign(0.005) TCGA-YC-A89H-01 10 90611520 90611520 C T ANKRD22 5'UTR 0.27 TCGA-YC-A89H-01 10 90966817 90966817 G A CH25H Missense_Mutation p.S78L 0.50 tolerated(0.3) benign(0.01) TCGA-YC-A89H-01 10 91174473 91174473 G A IFIT5 5'UTR 0.40 TCGA-YC-A89H-01 10 93667983 93667983 G A FGFBP3 Silent p.L248L 0.35 TCGA-YC-A89H-01 10 93786955 93786955 G A BTAF1 Silent p.Q1768Q 0.29 TCGA-YC-A89H-01 10 95083068 95083075 TGGCCCCA - MYOF Frame_Shift_Del p.L1771Sfs*41 0.38 TCGA-YC-A89H-01 10 95552497 95552497 C T LGI1 Intron 0.24 TCGA-YC-A89H-01 10 95790940 95790940 G A PLCE1 Missense_Mutation p.R46Q 0.38 tolerated_low_confidence(1) benign(0) TCGA-YC-A89H-01 10 95791143 95791143 C T PLCE1 Nonsense_Mutation p.Q114* 0.28 TCGA-YC-A89H-01 10 96013946 96013946 G T PLCE1 Splice_Site p.X1094_splice 0.41 TCGA-YC-A89H-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.29 TCGA-YC-A89H-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.36 TCGA-YC-A89H-01 10 96443451 96443451 G A CYP2C18 5'UTR 0.22 TCGA-YC-A89H-01 10 97023660 97023660 G A PDLIM1 Missense_Mutation p.S165L 0.39 tolerated(0.11) benign(0.082) TCGA-YC-A89H-01 10 97916770 97916770 G A ZNF518A RNA 0.28 TCGA-YC-A89H-01 10 97983672 97983672 C T BLNK Silent p.E145E 0.28 TCGA-YC-A89H-01 10 97987223 97987223 C T BLNK Missense_Mutation p.E102K 0.39 deleterious(0) benign(0.435) TCGA-YC-A89H-01 10 98031256 98031256 G C BLNK 5'UTR 0.21 TCGA-YC-A89H-01 10 98240136 98240152 GCTTGGTCCAGTCTCTG - TLL2 Frame_Shift_Del p.R81Dfs*13 0.19 TCGA-YC-A89H-01 10 99140623 99140623 G A RRP12 Missense_Mutation p.S489F 0.24 tolerated(0.72) benign(0.003) TCGA-YC-A89H-01 10 99400495 99400495 G A PI4K2A 5'UTR 0.30 TCGA-YC-A89H-01 10 99527399 99527400 - CAT SFRP5 In_Frame_Ins p.Q275_L276insM 0.38 TCGA-YC-A89H-01 11 102562529 102562529 G A MMP27 Missense_Mutation p.H504Y 0.19 tolerated_low_confidence(0.38) benign(0.001) TCGA-YC-A89H-01 11 102668772 102668772 G A MMP1 Missense_Mutation p.H18Y 0.54 tolerated(1) benign(0.007) TCGA-YC-A89H-01 11 104905094 104905094 C T CASP1 Missense_Mutation p.E39K 0.29 deleterious(0.04) probably_damaging(0.981) TCGA-YC-A89H-01 11 10517192 10517192 G A AMPD3 Missense_Mutation p.E457K 0.19 deleterious(0.03) benign(0.004) TCGA-YC-A89H-01 11 105950348 105950348 G A AASDHPPT Missense_Mutation p.G113E 0.23 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 11 106810726 106810741 TGACTCCAGAGTGGCC - GUCY1A2 Frame_Shift_Del p.Q217Hfs*32 0.17 TCGA-YC-A89H-01 11 10825530 10825530 C T EIF4G2 Silent p.K206K 0.36 TCGA-YC-A89H-01 11 111229643 111229643 G A POU2AF1 Missense_Mutation p.P6L 0.47 tolerated_low_confidence(0.1) benign(0.051) TCGA-YC-A89H-01 11 111853085 111853085 C T DIXDC1 Missense_Mutation p.S264F 0.38 tolerated(0.72) benign(0.003) TCGA-YC-A89H-01 11 113073155 113073155 C T NCAM1 Missense_Mutation p.S95F 0.17 deleterious(0) probably_damaging(0.959) TCGA-YC-A89H-01 11 114270854 114270854 C T C11orf71 Missense_Mutation p.R67Q 0.35 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-YC-A89H-01 11 117054792 117054792 G A SIDT2 Missense_Mutation p.E269K 0.13 tolerated(0.52) benign(0.006) TCGA-YC-A89H-01 11 118083203 118083203 C T AMICA1 Silent p.L39L 0.27 TCGA-YC-A89H-01 11 118083760 118083760 C T AMICA1 Intron 0.23 TCGA-YC-A89H-01 11 118772165 118772165 G A BCL9L Missense_Mutation p.P763S 0.34 benign(0.003) TCGA-YC-A89H-01 11 118889476 118889476 G A TRAPPC4 5'UTR 0.24 TCGA-YC-A89H-01 11 118900133 118900133 C T SLC37A4 5'UTR 0.45 TCGA-YC-A89H-01 11 118965872 118965872 C T H2AFX Missense_Mutation p.R78Q 0.27 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-YC-A89H-01 11 119181522 119181522 G A MCAM Silent p.L579L 0.30 TCGA-YC-A89H-01 11 120317138 120317138 G A ARHGEF12 Missense_Mutation p.E458K 0.47 deleterious(0) benign(0.444) TCGA-YC-A89H-01 11 120346102 120346102 G A ARHGEF12 Missense_Mutation p.D1055N 0.27 deleterious(0) benign(0.348) TCGA-YC-A89H-01 11 121416040 121416040 C T SORL1 Silent p.F651F 0.26 TCGA-YC-A89H-01 11 1221139 1221139 C T MUC5AC RNA 0.36 TCGA-YC-A89H-01 11 12246219 12246219 G A MICAL2 Splice_Site p.X514_splice 0.32 TCGA-YC-A89H-01 11 12246248 12246248 G A MICAL2 Silent p.L523L 0.35 TCGA-YC-A89H-01 11 123848254 123848254 T C OR10S1 Missense_Mutation p.S49G 0.20 deleterious(0.04) benign(0.003) TCGA-YC-A89H-01 11 123989307 123989307 A T VWA5A Silent p.T179T 0.17 TCGA-YC-A89H-01 11 124543546 124543546 C T SIAE Missense_Mutation p.R20K 0.33 tolerated(0.3) benign(0.002) TCGA-YC-A89H-01 11 124750313 124750313 G A ROBO3 Splice_Site p.X1320_splice 0.68 TCGA-YC-A89H-01 11 129997685 129997685 G A APLP2 Missense_Mutation p.E416K 0.24 deleterious(0.01) possibly_damaging(0.904) TCGA-YC-A89H-01 11 16760328 16760328 G A C11orf58 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-YC-A89H-01 11 16769643 16769643 G A C11orf58 Splice_Site p.X50_splice 0.26 TCGA-YC-A89H-01 11 17143799 17143799 C T PIK3C2A Missense_Mutation p.E865K 0.29 tolerated(0.25) probably_damaging(0.977) TCGA-YC-A89H-01 11 17190906 17190906 G A PIK3C2A Missense_Mutation p.S128L 0.44 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-YC-A89H-01 11 17530958 17530958 C T USH1C Missense_Mutation p.S653N 0.36 tolerated_low_confidence(0.4) benign(0.022) TCGA-YC-A89H-01 11 18111997 18111997 G A SAAL1 Silent p.L153L 0.27 TCGA-YC-A89H-01 11 1862727 1862727 C T TNNI2 Silent p.I165I 0.24 TCGA-YC-A89H-01 11 19259595 19259595 C T E2F8 Missense_Mutation p.E34K 0.31 deleterious(0.01) benign(0.309) TCGA-YC-A89H-01 11 21594897 21594897 G C NELL1 Missense_Mutation p.R775P 0.20 deleterious(0) possibly_damaging(0.889) TCGA-YC-A89H-01 11 2339171 2339171 G C TSPAN32 3'UTR 0.25 TCGA-YC-A89H-01 11 2424301 2424301 A C TSSC4 Silent p.S146S 0.25 TCGA-YC-A89H-01 11 26682070 26682070 G A ANO3 3'UTR 0.31 TCGA-YC-A89H-01 11 3026633 3026633 C T CARS Missense_Mutation p.R727K 0.32 tolerated(0.52) benign(0.02) TCGA-YC-A89H-01 11 33308963 33308963 C T HIPK3 Missense_Mutation p.R335W 0.56 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 11 3381506 3381506 G A ZNF195 Silent p.F244F 0.27 TCGA-YC-A89H-01 11 34226212 34226212 G A ABTB2 Silent p.F303F 0.47 TCGA-YC-A89H-01 11 34477673 34477673 C T CAT Missense_Mutation p.S276F 0.46 deleterious(0) probably_damaging(0.99) TCGA-YC-A89H-01 11 35640755 35640755 G A FJX1 Missense_Mutation p.E191K 0.30 deleterious(0) probably_damaging(0.98) TCGA-YC-A89H-01 11 35685175 35685175 G A TRIM44 Silent p.E172E 0.23 TCGA-YC-A89H-01 11 36520052 36520052 C T TRAF6 Silent p.L145L 0.21 TCGA-YC-A89H-01 11 3690514 3690514 G A CHRNA10 Nonsense_Mutation p.R92* 0.30 TCGA-YC-A89H-01 11 3721970 3721970 G A NUP98 Silent p.L1204L 0.33 TCGA-YC-A89H-01 11 399033 399033 C T PKP3 Silent p.F370F 0.32 TCGA-YC-A89H-01 11 44950827 44950827 G T TSPAN18 3'UTR 0.28 TCGA-YC-A89H-01 11 45827632 45827632 C T SLC35C1 Silent p.L94L 0.43 TCGA-YC-A89H-01 11 45892456 45892456 C T CRY2 Missense_Mutation p.S559L 0.32 tolerated(0.22) benign(0) TCGA-YC-A89H-01 11 46748283 46748283 C T F2 Silent p.F342F 0.25 TCGA-YC-A89H-01 11 47179409 47179409 G A C11orf49 Silent p.Q231Q 0.30 TCGA-YC-A89H-01 11 47179444 47179444 C T C11orf49 Missense_Mutation p.S243L 0.25 deleterious(0.01) benign(0.407) TCGA-YC-A89H-01 11 47198177 47198177 G A ARFGAP2 Silent p.F27F 0.18 TCGA-YC-A89H-01 11 47200518 47200518 C T PACSIN3 Missense_Mutation p.E322K 0.27 tolerated(0.39) benign(0.106) TCGA-YC-A89H-01 11 47256380 47256380 G C DDB2 Missense_Mutation p.A259P 0.34 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 11 47359053 47359053 G A MYBPC3 Missense_Mutation p.H831Y 0.38 tolerated(1) benign(0.002) TCGA-YC-A89H-01 11 47745605 47745605 G A FNBP4 Silent p.L813L 0.15 TCGA-YC-A89H-01 11 5264345 5264345 C G HBG1 3'Flank 0.27 TCGA-YC-A89H-01 11 55904873 55904873 T A OR8J3 Missense_Mutation p.I108F 0.25 deleterious(0) possibly_damaging(0.707) TCGA-YC-A89H-01 11 56143126 56143126 G A OR8U1 Silent p.A9A 0.32 TCGA-YC-A89H-01 11 56184755 56184755 T A OR5R1 Missense_Mutation p.L318F 0.28 tolerated_low_confidence(0.09) benign(0.001) TCGA-YC-A89H-01 11 57102539 57102539 C T SSRP1 Intron 0.35 TCGA-YC-A89H-01 11 57118274 57118274 C T P2RX3 Silent p.D248D 0.27 TCGA-YC-A89H-01 11 57466626 57466626 C T ZDHHC5 Missense_Mutation p.S573L 0.33 tolerated(0.23) benign(0.081) TCGA-YC-A89H-01 11 57466638 57466638 C T ZDHHC5 Missense_Mutation p.S577L 0.34 tolerated(0.06) probably_damaging(0.968) TCGA-YC-A89H-01 11 58275328 58275328 C T OR5B21 Missense_Mutation p.R84Q 0.30 tolerated_low_confidence(0.09) benign(0) TCGA-YC-A89H-01 11 58956718 58956718 G A DTX4 Missense_Mutation p.V361I 0.24 tolerated(0.14) benign(0.1) TCGA-YC-A89H-01 11 59837729 59837729 G A MS4A3 3'UTR 0.15 TCGA-YC-A89H-01 11 59856233 59856233 G A MS4A2 5'UTR 0.36 TCGA-YC-A89H-01 11 60183000 60183000 G A MS4A14 Missense_Mutation p.E220K 0.37 tolerated(0.1) benign(0.243) TCGA-YC-A89H-01 11 609451 609451 C T PHRF1 Missense_Mutation p.S1331L 0.21 tolerated(0.41) benign(0.008) TCGA-YC-A89H-01 11 61049325 61049325 G A VWCE Silent p.T240T 0.43 TCGA-YC-A89H-01 11 61511607 61511607 C T DAGLA Silent p.S925S 0.23 TCGA-YC-A89H-01 11 61539044 61539044 G A MYRF Silent p.L271L 0.39 TCGA-YC-A89H-01 11 61624494 61624494 G A FADS2 Silent p.K252K 0.18 TCGA-YC-A89H-01 11 62124466 62124466 A T ASRGL1 Missense_Mutation p.H114L 0.33 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 11 62288785 62288785 G A AHNAK Silent p.L4368L 0.28 TCGA-YC-A89H-01 11 62370717 62370717 C T EML3 Missense_Mutation p.D754N 0.40 tolerated(0.12) benign(0.094) TCGA-YC-A89H-01 11 62416367 62416367 C T INTS5 Silent p.V395V 0.27 TCGA-YC-A89H-01 11 62476409 62476409 C T GNG3 3'UTR 0.36 TCGA-YC-A89H-01 11 62489607 62489607 C T HNRNPUL2 Silent p.K447K 0.37 TCGA-YC-A89H-01 11 62592946 62592946 C T STX5 Silent p.Q163Q 0.36 TCGA-YC-A89H-01 11 64122766 64122766 C T CCDC88B Silent p.F1400F 0.27 TCGA-YC-A89H-01 11 64517909 64517909 C T PYGM Missense_Mutation p.E706K 0.33 tolerated(0.19) possibly_damaging(0.633) TCGA-YC-A89H-01 11 64537076 64537076 T C SF1 Missense_Mutation p.N287S 0.32 deleterious(0) possibly_damaging(0.854) TCGA-YC-A89H-01 11 64603002 64603002 C T CDC42BPG Missense_Mutation p.R617Q 0.28 tolerated(0.25) benign(0.007) TCGA-YC-A89H-01 11 64627711 64627711 G A EHD1 Silent p.F200F 0.31 TCGA-YC-A89H-01 11 64669549 64669549 C A ATG2A Missense_Mutation p.G1335V 0.33 tolerated(0.53) benign(0.006) TCGA-YC-A89H-01 11 64669550 64669550 C A ATG2A Missense_Mutation p.G1335C 0.36 tolerated(0.21) possibly_damaging(0.469) TCGA-YC-A89H-01 11 65123297 65123297 G A TIGD3 Silent p.K6K 0.29 TCGA-YC-A89H-01 11 65269230 65269230 G T MALAT1 RNA 0.31 TCGA-YC-A89H-01 11 65270170 65270170 G A MALAT1 RNA 0.44 TCGA-YC-A89H-01 11 65272453 65272453 C T MALAT1 RNA 0.42 TCGA-YC-A89H-01 11 65314387 65314387 G A LTBP3 Silent p.I704I 0.29 TCGA-YC-A89H-01 11 65480190 65480190 C T KAT5 Intron 0.41 TCGA-YC-A89H-01 11 65486404 65486404 C T KAT5 Silent p.L495L 0.31 TCGA-YC-A89H-01 11 65789307 65789307 G A CATSPER1 Silent p.Y491Y 0.21 TCGA-YC-A89H-01 11 66114512 66114512 C T B3GNT1 Missense_Mutation p.D169N 0.18 tolerated(0.15) benign(0.056) TCGA-YC-A89H-01 11 66131785 66131785 G C SLC29A2 Missense_Mutation p.F390L 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-YC-A89H-01 11 66299200 66299200 C T BBS1 Missense_Mutation p.S561L 0.33 deleterious(0) possibly_damaging(0.65) TCGA-YC-A89H-01 11 66393026 66393026 C T RBM14 Missense_Mutation p.S560F 0.31 deleterious(0) unknown(0) TCGA-YC-A89H-01 11 66407395 66407395 G A RBM4 Silent p.K71K 0.27 TCGA-YC-A89H-01 11 66589118 66589118 C T C11orf80 Silent p.V447V 0.30 TCGA-YC-A89H-01 11 66636338 66636338 G A PC Missense_Mutation p.T334M 0.29 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 11 67068389 67068389 G A ANKRD13D Intron 0.37 TCGA-YC-A89H-01 11 67075660 67075660 G A SSH3 Missense_Mutation p.E301K 0.28 deleterious(0) probably_damaging(0.99) TCGA-YC-A89H-01 11 67220094 67220094 G A GPR152 Silent p.V34V 0.44 TCGA-YC-A89H-01 11 67267429 67267429 C T PITPNM1 Missense_Mutation p.R340Q 0.34 tolerated(0.08) probably_damaging(0.999) TCGA-YC-A89H-01 11 67430480 67430480 C T ALDH3B2 3'UTR 0.38 TCGA-YC-A89H-01 11 6867594 6867594 C G OR10A5 Silent p.L227L 0.39 TCGA-YC-A89H-01 11 687942 687942 G A DEAF1 Silent p.S211S 0.35 TCGA-YC-A89H-01 11 69978125 69978125 G A ANO1 Missense_Mutation p.A400T 0.25 deleterious(0.01) benign(0.311) TCGA-YC-A89H-01 11 709566 709566 C G EPS8L2 Missense_Mutation p.R20G 0.23 deleterious(0.01) possibly_damaging(0.601) TCGA-YC-A89H-01 11 710447 710447 C T EPS8L2 Silent p.S42S 0.23 TCGA-YC-A89H-01 11 71259826 71259826 C A KRTAP5-9 Nonsense_Mutation p.C41* 0.22 TCGA-YC-A89H-01 11 71710165 71710165 G A IL18BP 5'UTR 0.30 TCGA-YC-A89H-01 11 71821176 71821176 C T ANAPC15 Missense_Mutation p.M92I 0.37 deleterious(0.03) benign(0.121) TCGA-YC-A89H-01 11 71939442 71939442 C T INPPL1 Silent p.I99I 0.46 TCGA-YC-A89H-01 11 726349 726349 A T EPS8L2 Missense_Mutation p.K600I 0.23 deleterious(0.04) benign(0.022) TCGA-YC-A89H-01 11 73714966 73714966 G A UCP3 Missense_Mutation p.R244W 0.37 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 11 73768464 73768464 G A C2CD3 Nonsense_Mutation p.Q1693* 0.37 TCGA-YC-A89H-01 11 74556274 74556274 C T XRRA1 Missense_Mutation p.E583K 0.36 tolerated(0.15) benign(0.008) TCGA-YC-A89H-01 11 763429 763429 G A TALDO1 Missense_Mutation p.V183M 0.28 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 11 7981782 7981782 C T NLRP10 Silent p.K459K 0.26 TCGA-YC-A89H-01 11 799982 799982 C A PIDD Silent p.G769G 0.18 TCGA-YC-A89H-01 11 804211 804211 G A PIDD Nonsense_Mutation p.Q60* 0.29 TCGA-YC-A89H-01 11 82877515 82877515 G A PCF11 Missense_Mutation p.A526T 0.25 tolerated(0.22) benign(0.007) TCGA-YC-A89H-01 11 82892982 82892982 C T PCF11 Silent p.L1418L 0.38 TCGA-YC-A89H-01 11 82989774 82989774 G A CCDC90B Nonsense_Mutation p.Q107* 0.18 TCGA-YC-A89H-01 11 836799 836799 C T CD151 Silent p.L103L 0.26 TCGA-YC-A89H-01 11 83874536 83874536 C T DLG2 Missense_Mutation p.E198K 0.38 tolerated(0.22) probably_damaging(0.981) TCGA-YC-A89H-01 11 85456705 85456705 C T SYTL2 Missense_Mutation p.E122K 0.30 deleterious(0.04) benign(0.297) TCGA-YC-A89H-01 11 85722085 85722085 G A PICALM Silent p.L251L 0.27 TCGA-YC-A89H-01 11 85722097 85722097 G A PICALM Silent p.I247I 0.33 TCGA-YC-A89H-01 11 85956265 85956265 G A EED 5'UTR 0.19 TCGA-YC-A89H-01 11 86048553 86048553 C T C11orf73 Missense_Mutation p.S134L 0.33 deleterious(0.03) benign(0.122) TCGA-YC-A89H-01 11 86106410 86106410 G A CCDC81 Missense_Mutation p.R197K 0.32 tolerated(0.19) benign(0.267) TCGA-YC-A89H-01 11 8705854 8705854 C T RPL27A Intron 0.28 TCGA-YC-A89H-01 11 89935658 89935658 C T CHORDC1 Missense_Mutation p.R305K 0.35 tolerated(0.78) benign(0.006) TCGA-YC-A89H-01 11 9005035 9005035 C T NRIP3 3'UTR 0.24 TCGA-YC-A89H-01 11 92533191 92533191 C T FAT3 Missense_Mutation p.H2338Y 0.33 probably_damaging(0.988) TCGA-YC-A89H-01 11 93465617 93465617 G A KIAA1731 3'Flank 0.36 TCGA-YC-A89H-01 11 93471396 93471396 C T TAF1D Missense_Mutation p.R113K 0.38 tolerated(0.64) benign(0.01) TCGA-YC-A89H-01 11 9438653 9438653 G T IPO7 Missense_Mutation p.W228C 0.27 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 11 9597468 9597468 A G WEE1 Missense_Mutation p.S204G 0.32 tolerated(0.26) benign(0.002) TCGA-YC-A89H-01 11 9715729 9715729 C T SWAP70 Missense_Mutation p.P46S 0.40 deleterious(0.04) probably_damaging(1) TCGA-YC-A89H-01 12 100478344 100478344 C T UHRF1BP1L Missense_Mutation p.V400I 0.41 tolerated(0.25) benign(0.211) TCGA-YC-A89H-01 12 1005690 1005690 G A WNK1 Missense_Mutation p.D2013N 0.35 deleterious(0) probably_damaging(0.926) TCGA-YC-A89H-01 12 101472986 101472986 A G ANO4 Missense_Mutation p.E408G 0.40 deleterious(0.01) possibly_damaging(0.69) TCGA-YC-A89H-01 12 101514311 101514311 C T ANO4 Missense_Mutation p.R827C 0.36 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 12 10324631 10324631 C T OLR1 Missense_Mutation p.D16N 0.20 deleterious(0.03) possibly_damaging(0.798) TCGA-YC-A89H-01 12 104326612 104326612 G A HSP90B1 Silent p.L101L 0.29 TCGA-YC-A89H-01 12 104487278 104487278 T A HCFC2 Missense_Mutation p.S467T 0.23 tolerated(0.13) benign(0.02) TCGA-YC-A89H-01 12 105238299 105238299 G A SLC41A2 Missense_Mutation p.S496F 0.25 deleterious(0.02) possibly_damaging(0.702) TCGA-YC-A89H-01 12 110032979 110032979 C T MVK Silent p.L344L 0.25 TCGA-YC-A89H-01 12 110783062 110783062 C T ATP2A2 Silent p.F872F 0.31 TCGA-YC-A89H-01 12 110783848 110783848 G A ATP2A2 Silent p.E928E 0.32 TCGA-YC-A89H-01 12 11183117 11183117 G A TAS2R31 Missense_Mutation p.S273L 0.04 tolerated(0.13) possibly_damaging(0.539) TCGA-YC-A89H-01 12 112119478 112119478 C T BRAP Missense_Mutation p.E136K 0.29 deleterious(0) probably_damaging(0.983) TCGA-YC-A89H-01 12 112617169 112617169 G C HECTD4 Missense_Mutation p.L3528V 0.43 probably_damaging(0.933) TCGA-YC-A89H-01 12 112696389 112696389 C A HECTD4 Silent p.L867L 0.31 TCGA-YC-A89H-01 12 113346556 113346556 C T OAS1 Silent p.L132L 0.43 TCGA-YC-A89H-01 12 113444321 113444321 C T OAS2 Silent p.F524F 0.32 TCGA-YC-A89H-01 12 113610263 113610263 G A DDX54 Missense_Mutation p.L392F 0.26 deleterious(0) probably_damaging(0.928) TCGA-YC-A89H-01 12 113612498 113612498 C T DDX54 Missense_Mutation p.D339N 0.41 tolerated(0.1) benign(0.064) TCGA-YC-A89H-01 12 113737648 113737648 G A SLC8B1 Silent p.F563F 0.30 TCGA-YC-A89H-01 12 113737681 113737681 G A SLC8B1 Silent p.L552L 0.30 TCGA-YC-A89H-01 12 118693378 118693378 C A TAOK3 5'UTR 0.32 TCGA-YC-A89H-01 12 120636693 120636693 G A RPLP0 Silent p.I143I 0.49 TCGA-YC-A89H-01 12 120763674 120763674 C T PLA2G1B Missense_Mutation p.E62K 0.33 deleterious(0.02) benign(0.362) TCGA-YC-A89H-01 12 120876279 120876279 G A AL021546.6 Silent p.E44E 0.35 TCGA-YC-A89H-01 12 121622338 121622338 C T P2RX7 Silent p.I507I 0.29 TCGA-YC-A89H-01 12 122691734 122691734 G A B3GNT4 Silent p.L312L 0.24 TCGA-YC-A89H-01 12 122999739 122999739 A C RSRC2 Missense_Mutation p.F213C 0.32 tolerated_low_confidence(0.06) unknown(0) TCGA-YC-A89H-01 12 12318085 12318085 C T LRP6 Missense_Mutation p.E564K 0.36 tolerated(0.23) benign(0.045) TCGA-YC-A89H-01 12 123281860 123281860 G C CCDC62 Missense_Mutation p.R260T 0.36 deleterious(0.01) possibly_damaging(0.773) TCGA-YC-A89H-01 12 123645359 123645359 C T MPHOSPH9 Missense_Mutation p.G988E 0.27 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 12 123645376 123645376 C T MPHOSPH9 Silent p.R982R 0.26 TCGA-YC-A89H-01 12 124228405 124228405 G A ATP6V0A2 Missense_Mutation p.R371H 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-YC-A89H-01 12 124399462 124399462 G A DNAH10 Silent p.R3428R 0.21 TCGA-YC-A89H-01 12 125398084 125398084 T C UBC Silent p.Q78Q 0.37 TCGA-YC-A89H-01 12 125626835 125626835 C T AACS 3'UTR 0.45 TCGA-YC-A89H-01 12 12940451 12940451 G A APOLD1 Silent p.E235E 0.40 TCGA-YC-A89H-01 12 130184543 130184543 G A TMEM132D Silent p.S260S 0.33 TCGA-YC-A89H-01 12 130184781 130184781 C T TMEM132D Missense_Mutation p.G181D 0.19 deleterious(0) possibly_damaging(0.877) TCGA-YC-A89H-01 12 130856036 130856036 C T PIWIL1 Missense_Mutation p.R827C 0.35 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 12 13103165 13103165 G A GPRC5D Nonsense_Mutation p.Q52* 0.38 TCGA-YC-A89H-01 12 131621527 131621527 A C GPR133 Missense_Mutation p.I802L 0.28 tolerated(0.07) possibly_damaging(0.609) TCGA-YC-A89H-01 12 132380193 132380193 C T ULK1 Silent p.L53L 0.25 TCGA-YC-A89H-01 12 133367876 133367876 C T GOLGA3 Missense_Mutation p.E825K 0.33 deleterious(0.02) possibly_damaging(0.759) TCGA-YC-A89H-01 12 1675904 1675904 C T FBXL14 3'UTR 0.26 TCGA-YC-A89H-01 12 1702075 1702075 G A FBXL14 Silent p.L386L 0.33 TCGA-YC-A89H-01 12 20806983 20806983 G T PDE3A Missense_Mutation p.G1010W 0.35 deleterious(0) possibly_damaging(0.833) TCGA-YC-A89H-01 12 25347884 25347884 G A CASC1 Intron 0.40 TCGA-YC-A89H-01 12 26634089 26634089 C T ITPR2 Missense_Mutation p.R2033Q 0.27 tolerated(0.06) benign(0.026) TCGA-YC-A89H-01 12 27800727 27800727 T C PPFIBP1 Silent p.L141L 0.31 TCGA-YC-A89H-01 12 27933906 27933906 G A KLHL42 Missense_Mutation p.E215K 0.43 tolerated(0.17) benign(0.057) TCGA-YC-A89H-01 12 29469859 29469859 C T FAR2 Silent p.F347F 0.33 TCGA-YC-A89H-01 12 30816492 30816492 C T IPO8 Missense_Mutation p.D509N 0.41 deleterious(0.02) possibly_damaging(0.623) TCGA-YC-A89H-01 12 31242394 31242394 C T DDX11 Missense_Mutation p.R284C 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-YC-A89H-01 12 31256816 31256816 G A DDX11 Missense_Mutation p.C921Y 0.30 tolerated_low_confidence(1) benign(0) TCGA-YC-A89H-01 12 31256874 31256874 G A DDX11 Silent p.V940V 0.21 TCGA-YC-A89H-01 12 32134198 32134198 A T KIAA1551 Missense_Mutation p.Q103H 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-YC-A89H-01 12 32145556 32145556 A G KIAA1551 3'UTR 0.30 TCGA-YC-A89H-01 12 32751518 32751518 C T FGD4 Nonsense_Mutation p.Q230* 0.32 TCGA-YC-A89H-01 12 40422151 40422151 C T SLC2A13 Missense_Mutation p.D293N 0.28 tolerated(0.28) benign(0.101) TCGA-YC-A89H-01 12 41966336 41966336 G A PDZRN4 Silent p.K585K 0.34 TCGA-YC-A89H-01 12 42858305 42858305 G A PRICKLE1 Missense_Mutation p.H511Y 0.35 deleterious(0.04) benign(0.155) TCGA-YC-A89H-01 12 46245816 46245816 C T ARID2 Silent p.L1304L 0.50 TCGA-YC-A89H-01 12 46318626 46318626 A T SCAF11 Missense_Mutation p.M1264K 0.42 deleterious(0) benign(0.397) TCGA-YC-A89H-01 12 46764322 46764322 A G SLC38A2 Missense_Mutation p.M96T 0.30 deleterious(0) probably_damaging(0.944) TCGA-YC-A89H-01 12 472224 472224 C T KDM5A Missense_Mutation p.E193K 0.31 tolerated(1) benign(0.024) TCGA-YC-A89H-01 12 47472633 47472633 G A AMIGO2 Silent p.I51I 0.17 TCGA-YC-A89H-01 12 48501229 48501229 C T PFKM Nonsense_Mutation p.Q25* 0.40 TCGA-YC-A89H-01 12 49259502 49259502 C T RND1 Missense_Mutation p.V17I 0.31 deleterious(0.04) probably_damaging(0.97) TCGA-YC-A89H-01 12 49427957 49427957 T A KMT2D Nonsense_Mutation p.K3545* 0.31 TCGA-YC-A89H-01 12 49446744 49446744 G A KMT2D Nonsense_Mutation p.Q356* 0.28 TCGA-YC-A89H-01 12 50586323 50586323 T C LIMA1 Missense_Mutation p.E352G 0.27 deleterious(0) possibly_damaging(0.616) TCGA-YC-A89H-01 12 50616033 50616033 G A LIMA1 Missense_Mutation p.P134L 0.33 deleterious(0.01) benign(0.126) TCGA-YC-A89H-01 12 51236848 51236848 C T TMPRSS12 Missense_Mutation p.S34L 0.41 tolerated_low_confidence(0.2) benign(0.028) TCGA-YC-A89H-01 12 52501354 52501354 G A AC078864.1 3'Flank 0.39 TCGA-YC-A89H-01 12 52700054 52700054 G A KRT86 Missense_Mutation p.E413K 0.12 deleterious(0.02) possibly_damaging(0.485) TCGA-YC-A89H-01 12 52713036 52713036 G A KRT83 Missense_Mutation p.T166I 0.34 deleterious(0.01) possibly_damaging(0.853) TCGA-YC-A89H-01 12 53218026 53218026 C T KRT79 Missense_Mutation p.A326T 0.34 deleterious(0.04) benign(0.043) TCGA-YC-A89H-01 12 53298815 53298815 G A KRT8 Intron 0.38 TCGA-YC-A89H-01 12 53342857 53342857 G A KRT18 5'UTR 0.35 TCGA-YC-A89H-01 12 53344175 53344175 G T KRT18 Missense_Mutation p.A161S 0.34 deleterious(0.04) probably_damaging(0.933) TCGA-YC-A89H-01 12 53453676 53453676 G A TENC1 Missense_Mutation p.D761N 0.27 tolerated(0.05) benign(0.433) TCGA-YC-A89H-01 12 53689709 53689709 G A PFDN5 Silent p.L53L 0.35 TCGA-YC-A89H-01 12 54106774 54106774 G A CALCOCO1 Intron 0.36 TCGA-YC-A89H-01 12 54645879 54645879 C T CBX5 Silent p.R90R 0.30 TCGA-YC-A89H-01 12 56115081 56115081 C T RDH5 Missense_Mutation p.S38L 0.35 deleterious(0.02) probably_damaging(0.976) TCGA-YC-A89H-01 12 56478817 56478817 G A ERBB3 Missense_Mutation p.M91I 0.24 tolerated(0.23) benign(0.082) TCGA-YC-A89H-01 12 56490899 56490899 C T ERBB3 Missense_Mutation p.S782F 0.33 deleterious(0) possibly_damaging(0.872) TCGA-YC-A89H-01 12 56504454 56504454 G A PA2G4 Missense_Mutation p.D274N 0.28 tolerated(0.28) benign(0.002) TCGA-YC-A89H-01 12 56527631 56527631 T C ESYT1 Missense_Mutation p.Y483H 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-YC-A89H-01 12 56581078 56581078 C T SMARCC2 Missense_Mutation p.E42K 0.35 deleterious(0) benign(0.292) TCGA-YC-A89H-01 12 56646861 56646861 G A ANKRD52 Silent p.I370I 0.23 TCGA-YC-A89H-01 12 56716401 56716401 C T PAN2 Missense_Mutation p.E883K 0.39 tolerated(0.09) probably_damaging(0.999) TCGA-YC-A89H-01 12 56716989 56716989 C T PAN2 Missense_Mutation p.E788K 0.35 tolerated(0.53) benign(0.031) TCGA-YC-A89H-01 12 56732769 56732769 G A IL23A 5'UTR 0.35 TCGA-YC-A89H-01 12 56826150 56826150 C T TIMELESS Intron 0.68 TCGA-YC-A89H-01 12 57038822 57038822 C T ATP5B Intron 0.29 TCGA-YC-A89H-01 12 57081748 57081748 C T PTGES3 Intron 0.24 TCGA-YC-A89H-01 12 57605709 57605709 G T LRP1 Splice_Site p.X4420_splice 0.34 TCGA-YC-A89H-01 12 57605719 57605719 C T LRP1 Missense_Mutation p.S4423F 0.23 benign(0.06) TCGA-YC-A89H-01 12 57898012 57898012 C T MARS Missense_Mutation p.P433L 0.22 deleterious(0.01) probably_damaging(0.945) TCGA-YC-A89H-01 12 57984998 57984998 G A PIP4K2C 5'Flank 0.23 TCGA-YC-A89H-01 12 62996670 62996670 G A C12orf61 3'UTR 0.32 TCGA-YC-A89H-01 12 6421357 6421357 G A PLEKHG6 5'UTR 0.29 TCGA-YC-A89H-01 12 6422844 6422844 C T PLEKHG6 Missense_Mutation p.S63F 0.30 deleterious_low_confidence(0.03) benign(0.006) TCGA-YC-A89H-01 12 64858190 64858190 C G TBK1 Missense_Mutation p.S102C 0.29 deleterious(0.01) possibly_damaging(0.705) TCGA-YC-A89H-01 12 65130818 65130818 C T GNS Missense_Mutation p.R355Q 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-YC-A89H-01 12 6787501 6787501 C T ZNF384 Missense_Mutation p.V160I 0.37 deleterious(0.02) benign(0.358) TCGA-YC-A89H-01 12 69140517 69140517 C T SLC35E3 Silent p.F120F 0.38 TCGA-YC-A89H-01 12 69250228 69250228 A G CPM Missense_Mutation p.F441L 0.22 tolerated_low_confidence(0.41) benign(0.001) TCGA-YC-A89H-01 12 70133538 70133538 C T RAB3IP 5'UTR 0.45 TCGA-YC-A89H-01 12 70671981 70671981 G A CNOT2 5'UTR 0.30 TCGA-YC-A89H-01 12 73056843 73056843 C T TRHDE Silent p.F981F 0.24 TCGA-YC-A89H-01 12 7521963 7521963 C T CD163L1 Silent p.V1343V 0.30 TCGA-YC-A89H-01 12 7522104 7522104 C T CD163L1 Silent p.L1296L 0.30 TCGA-YC-A89H-01 12 80747215 80747215 G A OTOGL Missense_Mutation p.E1831K 0.44 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 12 8212503 8212503 G A C3AR1 Silent p.F93F 0.30 TCGA-YC-A89H-01 12 863095 863095 G A WNK1 Missense_Mutation p.E122K 0.45 tolerated(0.11) unknown(0) TCGA-YC-A89H-01 12 88462324 88462324 G A CEP290 Missense_Mutation p.S2037L 0.43 possibly_damaging(0.705) TCGA-YC-A89H-01 12 89819052 89819052 C T POC1B Silent p.T406T 0.35 TCGA-YC-A89H-01 12 91545560 91545560 C G DCN Missense_Mutation p.L252F 0.37 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 12 93221770 93221770 C T EEA1 Missense_Mutation p.R441K 0.25 tolerated(0.09) possibly_damaging(0.816) TCGA-YC-A89H-01 12 94761689 94761690 - A CCDC41 Frame_Shift_Ins p.L408Ffs*9 0.29 TCGA-YC-A89H-01 12 95676227 95676227 C T VEZT Nonsense_Mutation p.Q379* 0.31 TCGA-YC-A89H-01 12 95867917 95867917 C T METAP2 5'UTR 0.20 TCGA-YC-A89H-01 12 970200 970200 G C WNK1 Missense_Mutation p.E548Q 0.32 deleterious(0) unknown(0) TCGA-YC-A89H-01 12 97051880 97051880 C T C12orf55 Missense_Mutation p.S1774L 0.35 deleterious(0) possibly_damaging(0.448) TCGA-YC-A89H-01 12 98995237 98995237 C T SLC25A3 Silent p.F340F 0.33 TCGA-YC-A89H-01 12 99007426 99007426 T C IKBIP Silent p.T330T 0.30 TCGA-YC-A89H-01 13 107220239 107220239 G A ARGLU1 Missense_Mutation p.S10F 0.40 deleterious_low_confidence(0) unknown(0) TCGA-YC-A89H-01 13 107220273 107220273 C T ARGLU1 5'UTR 0.44 TCGA-YC-A89H-01 13 110437768 110437768 C T IRS2 Silent p.K211K 0.36 TCGA-YC-A89H-01 13 111767876 111767876 G A ARHGEF7 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-YC-A89H-01 13 113862471 113862471 C T PCID2 Intron 0.30 TCGA-YC-A89H-01 13 20567734 20567734 C T ZMYM2 Silent p.I174I 0.28 TCGA-YC-A89H-01 13 25264855 25264855 G A ATP12A Silent p.L265L 0.29 TCGA-YC-A89H-01 13 28886137 28886137 A T FLT1 Missense_Mutation p.V1162E 0.26 tolerated(0.06) probably_damaging(0.999) TCGA-YC-A89H-01 13 31543138 31543138 A T TEX26 Missense_Mutation p.T255S 0.41 tolerated(0.69) benign(0.082) TCGA-YC-A89H-01 13 32371471 32371471 C T RXFP2 Silent p.F640F 0.34 TCGA-YC-A89H-01 13 32752364 32752364 G A FRY Nonsense_Mutation p.W824* 0.36 TCGA-YC-A89H-01 13 32968826 32968826 G A BRCA2 Missense_Mutation p.G3086E 0.22 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 13 33101633 33101633 G A N4BP2L2 Missense_Mutation p.S20L 0.23 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-YC-A89H-01 13 33703593 33703593 G A STARD13 Silent p.P407P 0.36 TCGA-YC-A89H-01 13 37453596 37453596 C G SMAD9 Silent p.G77G 0.30 TCGA-YC-A89H-01 13 37603948 37603948 T C SUPT20H Missense_Mutation p.K316R 0.39 tolerated(0.28) benign(0.002) TCGA-YC-A89H-01 13 41943408 41943408 A C NAA16 Missense_Mutation p.K646Q 0.35 deleterious(0.02) possibly_damaging(0.649) TCGA-YC-A89H-01 13 45563222 45563222 G A NUFIP1 Missense_Mutation p.S117L 0.43 tolerated_low_confidence(0.06) benign(0.015) TCGA-YC-A89H-01 13 50589677 50589677 C T KCNRG Silent p.F16F 0.32 TCGA-YC-A89H-01 13 52025078 52025078 C T INTS6 Intron 0.23 TCGA-YC-A89H-01 13 52602636 52602636 C T ALG11 Silent p.I463I 0.32 TCGA-YC-A89H-01 13 73636119 73636119 G A KLF5 Missense_Mutation p.E128K 0.36 tolerated(1) possibly_damaging(0.899) TCGA-YC-A89H-01 13 73636220 73636220 C T KLF5 Silent p.I161I 0.32 TCGA-YC-A89H-01 13 76055665 76055665 C T TBC1D4 Missense_Mutation p.R80Q 0.22 tolerated(0.2) probably_damaging(0.997) TCGA-YC-A89H-01 13 77566371 77566371 C T CLN5 Silent p.G95G 0.38 TCGA-YC-A89H-01 13 77742611 77742611 G A MYCBP2 Silent p.V1984V 0.29 TCGA-YC-A89H-01 13 79175801 79175801 C T POU4F1 Missense_Mutation p.E337K 0.33 deleterious(0) unknown(0) TCGA-YC-A89H-01 13 92003372 92003372 G A MIR17HG RNA 0.33 TCGA-YC-A89H-01 13 95271755 95271755 G A GPR180 Missense_Mutation p.M240I 0.31 tolerated(0.2) benign(0.009) TCGA-YC-A89H-01 13 95858815 95858815 C G ABCC4 Missense_Mutation p.E378Q 0.32 deleterious(0.01) possibly_damaging(0.606) TCGA-YC-A89H-01 13 96409922 96409922 G A DNAJC3 Missense_Mutation p.E140K 0.42 deleterious(0.05) benign(0.021) TCGA-YC-A89H-01 13 96543179 96543179 G A UGGT2 Silent p.F965F 0.26 TCGA-YC-A89H-01 13 96743557 96743557 G A HS6ST3 Silent p.V147V 0.42 TCGA-YC-A89H-01 13 99083377 99083377 G A FARP1 Silent p.E662E 0.52 TCGA-YC-A89H-01 13 99336874 99336874 G A SLC15A1 3'UTR 0.43 TCGA-YC-A89H-01 13 99907631 99907631 C T GPR18 Missense_Mutation p.D166N 0.40 tolerated(0.53) benign(0.03) TCGA-YC-A89H-01 14 102460545 102460545 G A DYNC1H1 Missense_Mutation p.E1014K 0.35 benign(0.01) TCGA-YC-A89H-01 14 102552222 102552222 G A HSP90AA1 Silent p.F256F 0.37 TCGA-YC-A89H-01 14 103571389 103571389 C T EXOC3L4 Silent p.I482I 0.32 TCGA-YC-A89H-01 14 105206143 105206143 G A ADSSL1 Missense_Mutation p.E199K 0.17 tolerated(0.49) benign(0.433) TCGA-YC-A89H-01 14 105207471 105207471 C T ADSSL1 Silent p.I271I 0.28 TCGA-YC-A89H-01 14 105242030 105242030 C T AKT1 Missense_Mutation p.E132K 0.36 tolerated(0.33) benign(0.04) TCGA-YC-A89H-01 14 105405653 105405653 C A AHNAK2 Missense_Mutation p.D5379Y 0.28 probably_damaging(0.974) TCGA-YC-A89H-01 14 105410601 105410601 C T AHNAK2 Silent p.L3729L 0.31 TCGA-YC-A89H-01 14 105410960 105410960 C A AHNAK2 Missense_Mutation p.A3610S 0.32 possibly_damaging(0.567) TCGA-YC-A89H-01 14 105410961 105410961 C G AHNAK2 Missense_Mutation p.Q3609H 0.32 benign(0.387) TCGA-YC-A89H-01 14 105818719 105818719 C T PACS2 Missense_Mutation p.S71F 0.26 deleterious(0) probably_damaging(0.988) TCGA-YC-A89H-01 14 20296144 20296144 T C OR4N2 Silent p.C179C 0.11 TCGA-YC-A89H-01 14 20296157 20296157 G C OR4N2 Missense_Mutation p.V184L 0.12 tolerated(0.32) benign(0.181) TCGA-YC-A89H-01 14 21762908 21762908 T A RPGRIP1 Missense_Mutation p.L53H 0.27 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 14 21762930 21762930 G A RPGRIP1 Silent p.V60V 0.37 TCGA-YC-A89H-01 14 22521230 22521230 C T TRAV21 Missense_Mutation p.S84L 0.37 tolerated(1) benign(0.047) TCGA-YC-A89H-01 14 23346570 23346570 G A LRP10 Missense_Mutation p.R659Q 0.16 tolerated(0.09) probably_damaging(0.978) TCGA-YC-A89H-01 14 24035838 24035838 G T AP1G2 Missense_Mutation p.L88M 0.32 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 14 24422949 24422949 C T DHRS4 5'UTR 0.30 TCGA-YC-A89H-01 14 24424358 24424358 G A DHRS4 Silent p.L81L 0.34 TCGA-YC-A89H-01 14 24531738 24531738 G A LRRC16B Missense_Mutation p.E844K 0.27 deleterious(0) benign(0.37) TCGA-YC-A89H-01 14 24566303 24566303 G A PCK2 Missense_Mutation p.E78K 0.31 tolerated(0.18) benign(0.187) TCGA-YC-A89H-01 14 24635086 24635086 C T IRF9 Missense_Mutation p.P341L 0.44 deleterious(0.04) probably_damaging(1) TCGA-YC-A89H-01 14 24641691 24641691 T C REC8 5'UTR 0.73 TCGA-YC-A89H-01 14 24709776 24709776 C T TINF2 Missense_Mutation p.E304K 0.24 tolerated_low_confidence(0.19) possibly_damaging(0.486) TCGA-YC-A89H-01 14 24711153 24711153 C T TINF2 Silent p.L80L 0.18 TCGA-YC-A89H-01 14 24780261 24780261 C T LTB4R2 Missense_Mutation p.R131W 0.55 deleterious(0.04) probably_damaging(0.96) TCGA-YC-A89H-01 14 24785132 24785132 T G LTB4R Missense_Mutation p.L92R 0.39 deleterious(0) probably_damaging(0.993) TCGA-YC-A89H-01 14 24799063 24799063 C T ADCY4 Intron 0.33 TCGA-YC-A89H-01 14 24799153 24799153 C T ADCY4 Missense_Mutation p.G377E 0.27 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 14 24885987 24885987 G A NYNRIN Missense_Mutation p.E1678K 0.21 deleterious(0) probably_damaging(0.91) TCGA-YC-A89H-01 14 31675067 31675067 T G HECTD1 Missense_Mutation p.I26L 0.27 deleterious(0.01) benign(0.326) TCGA-YC-A89H-01 14 31765267 31765267 C T RP11-596D21.1 Intron 0.14 TCGA-YC-A89H-01 14 32031351 32031351 G A NUBPL Silent p.P62P 0.41 TCGA-YC-A89H-01 14 36004547 36004547 G A INSM2 Silent p.A363A 0.30 TCGA-YC-A89H-01 14 37969153 37969153 C T MIPOL1 Nonsense_Mutation p.Q358* 0.37 TCGA-YC-A89H-01 14 38061362 38061362 C T FOXA1 Silent p.Q209Q 0.38 TCGA-YC-A89H-01 14 38724627 38724627 C T CLEC14A Missense_Mutation p.A201T 0.42 tolerated(0.34) benign(0.104) TCGA-YC-A89H-01 14 42356035 42356035 A C LRFN5 Missense_Mutation p.K69N 0.34 tolerated(0.13) probably_damaging(0.983) TCGA-YC-A89H-01 14 50798855 50798855 C T CDKL1 Intron 0.36 TCGA-YC-A89H-01 14 50798883 50798883 G A CDKL1 Intron 0.38 TCGA-YC-A89H-01 14 54950433 54950433 C G GMFB Missense_Mutation p.R19T 0.25 deleterious(0.04) benign(0.398) TCGA-YC-A89H-01 14 55818006 55818006 G A FBXO34 Missense_Mutation p.G300R 0.35 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 14 55819051 55819051 G A FBXO34 Missense_Mutation p.R648Q 0.31 deleterious(0.02) benign(0.203) TCGA-YC-A89H-01 14 55844744 55844744 C T ATG14 Silent p.V348V 0.28 TCGA-YC-A89H-01 14 57082698 57082698 C T TMEM260 Silent p.F298F 0.31 TCGA-YC-A89H-01 14 57268423 57268423 A T OTX2 3'UTR 0.29 TCGA-YC-A89H-01 14 57858277 57858277 C T NAA30 Missense_Mutation p.S201L 0.33 tolerated(0.11) benign(0.003) TCGA-YC-A89H-01 14 58563469 58563469 C T C14orf37 Missense_Mutation p.E688K 0.21 deleterious(0.05) possibly_damaging(0.502) TCGA-YC-A89H-01 14 58605593 58605593 C T C14orf37 Missense_Mutation p.E162K 0.20 tolerated(0.08) possibly_damaging(0.486) TCGA-YC-A89H-01 14 58675802 58675802 C T ACTR10 Missense_Mutation p.R107C 0.32 deleterious(0) possibly_damaging(0.79) TCGA-YC-A89H-01 14 61113204 61113204 C T SIX1 Missense_Mutation p.E218K 0.22 tolerated(0.23) benign(0.017) TCGA-YC-A89H-01 14 61115425 61115425 G A SIX1 Silent p.T161T 0.45 TCGA-YC-A89H-01 14 64626110 64626110 C A SYNE2 Nonsense_Mutation p.C5348* 0.19 TCGA-YC-A89H-01 14 65007491 65007491 G A HSPA2 5'UTR 0.38 TCGA-YC-A89H-01 14 65233459 65233459 G A SPTB Silent p.T2110T 0.50 TCGA-YC-A89H-01 14 65453668 65453668 G A FNTB 5'UTR 0.26 TCGA-YC-A89H-01 14 66096237 66096237 C T FUT8 Silent p.L170L 0.31 TCGA-YC-A89H-01 14 67768807 67768807 G A MPP5 Missense_Mutation p.R258H 0.27 tolerated(0.11) probably_damaging(0.955) TCGA-YC-A89H-01 14 67826422 67826422 G A ATP6V1D 5'UTR 0.28 TCGA-YC-A89H-01 14 68196014 68196014 C T RDH12 Silent p.V255V 0.32 TCGA-YC-A89H-01 14 68352699 68352699 T A RAD51B Missense_Mutation p.L189Q 0.30 deleterious(0.03) benign(0.142) TCGA-YC-A89H-01 14 69256573 69256573 G A ZFP36L1 Silent p.L232L 0.33 TCGA-YC-A89H-01 14 69259669 69259669 G A ZFP36L1 5'UTR 0.29 TCGA-YC-A89H-01 14 69589074 69589074 C T DCAF5 Missense_Mutation p.G73E 0.38 deleterious(0.01) probably_damaging(0.927) TCGA-YC-A89H-01 14 70634149 70634149 C T SLC8A3 Missense_Mutation p.D331N 0.27 deleterious(0) benign(0.355) TCGA-YC-A89H-01 14 74004501 74004501 G A ACOT1 Missense_Mutation p.E126K 0.42 deleterious(0.02) benign(0.029) TCGA-YC-A89H-01 14 74206641 74206641 G A ELMSAN1 Missense_Mutation p.A24V 0.29 tolerated_low_confidence(0.11) benign(0.019) TCGA-YC-A89H-01 14 74438604 74438604 T C ENTPD5 Silent p.E345E 0.36 TCGA-YC-A89H-01 14 76045315 76045315 G A FLVCR2 5'UTR 0.32 TCGA-YC-A89H-01 14 77491854 77491854 C T IRF2BPL Missense_Mutation p.G761E 0.34 deleterious(0) unknown(0) TCGA-YC-A89H-01 14 78140405 78140405 G T ALKBH1 Missense_Mutation p.A307E 0.33 tolerated(0.69) benign(0.102) TCGA-YC-A89H-01 14 78325524 78325524 G A ADCK1 Missense_Mutation p.E109K 0.35 tolerated(0.71) benign(0.006) TCGA-YC-A89H-01 14 81251329 81251329 C T CEP128 Silent p.V707V 0.32 TCGA-YC-A89H-01 14 81954277 81954277 G A SEL1L Silent p.L469L 0.33 TCGA-YC-A89H-01 14 88477782 88477782 C T GPR65 Silent p.V197V 0.27 TCGA-YC-A89H-01 14 88737227 88737227 C T KCNK10 Intron 0.36 TCGA-YC-A89H-01 14 88895772 88895772 G C SPATA7 Missense_Mutation p.E331D 0.26 tolerated(0.27) benign(0.018) TCGA-YC-A89H-01 14 89082485 89082485 C G EML5 Splice_Site p.X1966_splice 0.22 TCGA-YC-A89H-01 14 90651124 90651124 G A KCNK13 Missense_Mutation p.S335N 0.28 tolerated(0.08) probably_damaging(0.938) TCGA-YC-A89H-01 14 91341662 91341662 G A RPS6KA5 Nonsense_Mutation p.R627* 0.18 TCGA-YC-A89H-01 14 91639689 91639689 G A C14orf159 Missense_Mutation p.M171I 0.47 deleterious(0.01) possibly_damaging(0.568) TCGA-YC-A89H-01 14 93685641 93685641 G A UBR7 Silent p.K298K 0.37 TCGA-YC-A89H-01 14 95030219 95030219 G A SERPINA4 Missense_Mutation p.G134R 0.25 tolerated(0.47) benign(0.003) TCGA-YC-A89H-01 14 96000057 96000057 G A GLRX5 5'Flank 0.23 TCGA-YC-A89H-01 14 96129928 96129928 A G TCL6 RNA 0.19 TCGA-YC-A89H-01 14 96730442 96730442 C T BDKRB1 Silent p.H141H 0.25 TCGA-YC-A89H-01 15 101432792 101432792 C G ALDH1A3 Silent p.L141L 0.42 TCGA-YC-A89H-01 15 101717508 101717508 T A CHSY1 3'UTR 0.37 TCGA-YC-A89H-01 15 101827113 101827113 T C SNRPA1 Silent p.K153K 0.31 TCGA-YC-A89H-01 15 102182546 102182546 C T TM2D3 3'UTR 0.31 TCGA-YC-A89H-01 15 22845788 22845788 G A TUBGCP5 Missense_Mutation p.E217K 0.30 tolerated(0.12) possibly_damaging(0.474) TCGA-YC-A89H-01 15 23048760 23048760 C T NIPA1 3'UTR 0.19 TCGA-YC-A89H-01 15 25585264 25585264 C T UBE3A Missense_Mutation p.M825I 0.21 deleterious(0.01) benign(0.309) TCGA-YC-A89H-01 15 28566523 28566523 C T HERC2 Silent p.L19L 0.24 TCGA-YC-A89H-01 15 30058731 30058731 C T TJP1 Silent p.K109K 0.22 TCGA-YC-A89H-01 15 38808494 38808494 C T RASGRP1 Silent p.K193K 0.24 TCGA-YC-A89H-01 15 39544723 39544723 G A C15orf54 Nonsense_Mutation p.W129* 0.34 TCGA-YC-A89H-01 15 40322574 40322574 C T EIF2AK4 Missense_Mutation p.H1526Y 0.24 tolerated(0.12) possibly_damaging(0.733) TCGA-YC-A89H-01 15 40627559 40627559 C T C15orf52 Missense_Mutation p.E469K 0.35 tolerated(0.44) benign(0.013) TCGA-YC-A89H-01 15 40660944 40660944 G A DISP2 Missense_Mutation p.M877I 0.29 tolerated(0.57) benign(0.037) TCGA-YC-A89H-01 15 41068784 41068784 C T DNAJC17 Missense_Mutation p.E113K 0.38 tolerated(0.29) benign(0.242) TCGA-YC-A89H-01 15 41165917 41165917 G A RHOV Missense_Mutation p.P78S 0.26 deleterious(0.01) possibly_damaging(0.484) TCGA-YC-A89H-01 15 42067506 42067506 G A MAPKBP1 Silent p.R11R 0.23 TCGA-YC-A89H-01 15 42173397 42173397 C T SPTBN5 Silent p.L831L 0.21 TCGA-YC-A89H-01 15 42185583 42185583 G A SPTBN5 Missense_Mutation p.S38F 0.37 probably_damaging(0.986) TCGA-YC-A89H-01 15 42361110 42361110 C G PLA2G4D Missense_Mutation p.G754R 0.33 tolerated(0.31) benign(0.008) TCGA-YC-A89H-01 15 42684901 42684901 C T CAPN3 Missense_Mutation p.S337F 0.15 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 15 44914075 44914075 C T SPG11 Silent p.L834L 0.28 TCGA-YC-A89H-01 15 45404840 45404840 G A DUOX2 Silent p.P79P 0.19 TCGA-YC-A89H-01 15 45460030 45460030 G A SHF 3'UTR 0.38 TCGA-YC-A89H-01 15 45555265 45555265 C T SLC28A2 Missense_Mutation p.A90V 0.34 tolerated(0.3) benign(0.424) TCGA-YC-A89H-01 15 48756210 48756210 C T FBN1 Missense_Mutation p.E1651K 0.48 probably_damaging(0.983) TCGA-YC-A89H-01 15 49148278 49148278 G A SHC4 Missense_Mutation p.H372Y 0.27 deleterious(0.02) benign(0.006) TCGA-YC-A89H-01 15 50581731 50581731 T C GABPB1 Missense_Mutation p.T290A 0.28 tolerated(0.2) benign(0.049) TCGA-YC-A89H-01 15 50916422 50916422 T A TRPM7 Missense_Mutation p.N461Y 0.33 tolerated(0.17) probably_damaging(0.911) TCGA-YC-A89H-01 15 51634106 51634106 G A GLDN Silent p.A75A 0.37 TCGA-YC-A89H-01 15 51787314 51787314 C T DMXL2 Missense_Mutation p.E1564K 0.43 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 15 51830605 51830605 C A DMXL2 Nonsense_Mutation p.G384* 0.38 TCGA-YC-A89H-01 15 52017042 52017042 C G LYSMD2 Missense_Mutation p.D184H 0.26 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 15 55489079 55489079 C T RSL24D1 Missense_Mutation p.E4K 0.39 deleterious(0.01) benign(0.091) TCGA-YC-A89H-01 15 55642995 55642995 C T PIGB Nonsense_Mutation p.Q408* 0.30 TCGA-YC-A89H-01 15 55964750 55964750 G A PRTG Missense_Mutation p.T645I 0.31 tolerated(0.15) benign(0.148) TCGA-YC-A89H-01 15 59175842 59175842 C T SLTM Missense_Mutation p.M993I 0.34 tolerated(0.08) benign(0.168) TCGA-YC-A89H-01 15 59445812 59445812 C A MYO1E Missense_Mutation p.K1019N 0.31 tolerated(1) benign(0.001) TCGA-YC-A89H-01 15 60715874 60715874 C T NARG2 Missense_Mutation p.E970K 0.48 tolerated(0.39) possibly_damaging(0.471) TCGA-YC-A89H-01 15 63956777 63956777 G A HERC1 Missense_Mutation p.H2858Y 0.33 benign(0.263) TCGA-YC-A89H-01 15 64446161 64446161 G A SNX22 Silent p.L140L 0.35 TCGA-YC-A89H-01 15 66030256 66030256 C T DENND4A Missense_Mutation p.E277K 0.53 deleterious(0) probably_damaging(0.929) TCGA-YC-A89H-01 15 66161948 66161948 G A RAB11A Missense_Mutation p.D9N 0.20 tolerated_low_confidence(0.07) benign(0.392) TCGA-YC-A89H-01 15 67457304 67457304 G A SMAD3 Missense_Mutation p.R93Q 0.38 deleterious(0) probably_damaging(0.974) TCGA-YC-A89H-01 15 68118604 68118604 C T SKOR1 Silent p.I332I 0.30 TCGA-YC-A89H-01 15 68504028 68504028 G A CLN6 Silent p.L157L 0.29 TCGA-YC-A89H-01 15 69080151 69080151 G A ANP32A Silent p.L54L 0.25 TCGA-YC-A89H-01 15 69737138 69737138 C T KIF23 Nonsense_Mutation p.Q797* 0.29 TCGA-YC-A89H-01 15 70959768 70959768 C T UACA Silent p.V1085V 0.35 TCGA-YC-A89H-01 15 72180354 72180354 G A MYO9A Missense_Mutation p.S1749L 0.27 tolerated(0.33) benign(0.002) TCGA-YC-A89H-01 15 72193624 72193624 G A MYO9A Missense_Mutation p.L1020F 0.41 deleterious(0) probably_damaging(0.986) TCGA-YC-A89H-01 15 72643403 72643403 C T HEXA Intron 0.25 TCGA-YC-A89H-01 15 73428253 73428253 G A NEO1 Silent p.L300L 0.44 TCGA-YC-A89H-01 15 74536335 74536335 G A CCDC33 Missense_Mutation p.D11N 0.36 tolerated(0.83) benign(0) TCGA-YC-A89H-01 15 74573083 74573083 C T CCDC33 Nonsense_Mutation p.Q322* 0.21 TCGA-YC-A89H-01 15 74703302 74703302 G A SEMA7A Missense_Mutation p.S555F 0.17 deleterious(0) benign(0.407) TCGA-YC-A89H-01 15 75335847 75335847 C T PPCDC Silent p.V67V 0.53 TCGA-YC-A89H-01 15 75702225 75702225 A T SIN3A Missense_Mutation p.N423K 0.22 tolerated(0.25) benign(0.056) TCGA-YC-A89H-01 15 75941612 75941612 G A SNX33 Missense_Mutation p.E57K 0.32 deleterious(0.01) benign(0.055) TCGA-YC-A89H-01 15 75941899 75941899 C A SNX33 Silent p.P152P 0.34 TCGA-YC-A89H-01 15 76196962 76196962 G A FBXO22 Missense_Mutation p.E91K 0.25 tolerated(0.06) benign(0.003) TCGA-YC-A89H-01 15 78458491 78458491 G A IDH3A Splice_Site p.X289_splice 0.37 TCGA-YC-A89H-01 15 80843544 80843544 G A ARNT2 Missense_Mutation p.M294I 0.35 tolerated(0.18) benign(0.004) TCGA-YC-A89H-01 15 80889678 80889678 G A ARNT2 3'UTR 0.35 TCGA-YC-A89H-01 15 82444225 82444225 T G EFTUD1 Missense_Mutation p.K857T 0.37 tolerated(0.47) benign(0.001) TCGA-YC-A89H-01 15 83518517 83518517 C T HOMER2 Missense_Mutation p.D339N 0.36 tolerated(0.06) benign(0.265) TCGA-YC-A89H-01 15 86076849 86076849 C A AKAP13 Silent p.L72L 0.28 TCGA-YC-A89H-01 15 86077054 86077054 A G AKAP13 Missense_Mutation p.R141G 0.25 deleterious(0) probably_damaging(0.996) TCGA-YC-A89H-01 15 86207988 86207988 T C AKAP13 Splice_Site p.X1668_splice 0.30 TCGA-YC-A89H-01 15 86284583 86284583 G A AKAP13 Missense_Mutation p.E2643K 0.31 deleterious(0.03) benign(0.059) TCGA-YC-A89H-01 15 89753481 89753481 G A RLBP1 3'UTR 0.21 TCGA-YC-A89H-01 15 90212778 90212778 C T PLIN1 Missense_Mutation p.E242K 0.43 tolerated(1) benign(0.006) TCGA-YC-A89H-01 15 90340848 90340848 G A ANPEP Silent p.F705F 0.33 TCGA-YC-A89H-01 15 90766835 90766835 C T SEMA4B Silent p.S302S 0.38 TCGA-YC-A89H-01 15 91020385 91020385 C T IQGAP1 Silent p.L1009L 0.33 TCGA-YC-A89H-01 15 91428765 91428765 C T FES Missense_Mutation p.R113C 0.17 deleterious(0) possibly_damaging(0.768) TCGA-YC-A89H-01 15 91769832 91769832 C T SV2B Silent p.F113F 0.36 TCGA-YC-A89H-01 15 93467556 93467556 C T CHD2 Missense_Mutation p.S23L 0.30 deleterious_low_confidence(0) unknown(0) TCGA-YC-A89H-01 15 93467697 93467697 C T CHD2 Missense_Mutation p.S70L 0.23 tolerated(0.16) unknown(0) TCGA-YC-A89H-01 15 96880727 96880727 C G NR2F2 Missense_Mutation p.S374C 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-YC-A89H-01 16 11815500 11815500 G A TXNDC11 Silent p.F242F 0.28 TCGA-YC-A89H-01 16 1261225 1261225 C T CACNA1H Silent p.L1427L 0.29 TCGA-YC-A89H-01 16 129645 129645 G T MPG Silent p.G87G 0.30 TCGA-YC-A89H-01 16 15812202 15812202 C T MYH11 Missense_Mutation p.M1762I 0.37 benign(0.002) TCGA-YC-A89H-01 16 1822520 1822520 G A MRPS34 Intron 0.32 TCGA-YC-A89H-01 16 1826238 1826238 G A EME2 Silent p.%3D 0.25 TCGA-YC-A89H-01 16 18908222 18908222 C T SMG1 Missense_Mutation p.R50K 0.38 tolerated_low_confidence(0.86) benign(0.096) TCGA-YC-A89H-01 16 19195467 19195467 C T SYT17 Nonsense_Mutation p.Q317* 0.29 TCGA-YC-A89H-01 16 1961955 1961955 G T HS3ST6 Missense_Mutation p.A191D 0.31 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 16 21170712 21170712 C T DNAH3 Silent p.P17P 0.32 TCGA-YC-A89H-01 16 2130215 2130215 C T TSC2 Silent p.F1149F 0.27 TCGA-YC-A89H-01 16 2153751 2153751 G A PKD1 Silent p.L2769L 0.31 TCGA-YC-A89H-01 16 22261995 22261995 G A EEF2K Missense_Mutation p.M143I 0.32 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 16 22316519 22316519 C T POLR3E Silent p.L27L 0.31 TCGA-YC-A89H-01 16 22330196 22330196 C T POLR3E Silent p.I305I 0.40 TCGA-YC-A89H-01 16 2258510 2258510 C G MLST8 Missense_Mutation p.S253C 0.30 deleterious(0) possibly_damaging(0.765) TCGA-YC-A89H-01 16 23646997 23646997 C T PALB2 Silent p.E290E 0.31 TCGA-YC-A89H-01 16 23706646 23706646 G A ERN2 Missense_Mutation p.R607W 0.31 deleterious(0) possibly_damaging(0.799) TCGA-YC-A89H-01 16 25123189 25123189 A G LCMT1 5'UTR 0.38 TCGA-YC-A89H-01 16 27246532 27246532 G A NSMCE1 Silent p.V75V 0.18 TCGA-YC-A89H-01 16 27481564 27481564 G A GTF3C1 Missense_Mutation p.S1560L 0.35 deleterious(0.04) possibly_damaging(0.663) TCGA-YC-A89H-01 16 28878658 28878658 C T SH2B1 Missense_Mutation p.R316W 0.40 deleterious(0) probably_damaging(0.99) TCGA-YC-A89H-01 16 28935728 28935728 C T RABEP2 Silent p.L90L 0.31 TCGA-YC-A89H-01 16 29367157 29367157 G A SNX29P2 RNA 0.42 TCGA-YC-A89H-01 16 29816583 29816596 GGCAAACATCCTGG - KIF22 Splice_Site p.X651_splice 0.12 TCGA-YC-A89H-01 16 29913196 29913196 G C ASPHD1 Missense_Mutation p.E302Q 0.38 tolerated(0.51) probably_damaging(0.91) TCGA-YC-A89H-01 16 30005376 30005376 C T HIRIP3 Missense_Mutation p.D364N 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-YC-A89H-01 16 30123693 30123693 G A GDPD3 Silent p.F139F 0.41 TCGA-YC-A89H-01 16 3019837 3019837 G A PAQR4 Silent p.T54T 0.19 TCGA-YC-A89H-01 16 3019841 3019841 G A PAQR4 Missense_Mutation p.G56R 0.24 deleterious(0.01) benign(0.229) TCGA-YC-A89H-01 16 30198783 30198783 C T CORO1A Silent p.F239F 0.36 TCGA-YC-A89H-01 16 30620894 30620894 C T ZNF689 Missense_Mutation p.A91T 0.19 tolerated(0.44) benign(0.094) TCGA-YC-A89H-01 16 30779477 30779477 A G RNF40 Silent p.P535P 0.40 TCGA-YC-A89H-01 16 31150602 31150602 C T PRSS36 Missense_Mutation p.E809K 0.41 tolerated(0.06) possibly_damaging(0.824) TCGA-YC-A89H-01 16 31228159 31228159 T C PYDC1 Missense_Mutation p.Y64C 0.26 deleterious(0) probably_damaging(0.981) TCGA-YC-A89H-01 16 3142294 3142294 C T ZSCAN10 Silent p.K85K 0.27 TCGA-YC-A89H-01 16 3338459 3338459 C G ZNF263 Missense_Mutation p.H259D 0.23 tolerated(0.34) benign(0.006) TCGA-YC-A89H-01 16 3639732 3639732 C T SLX4 Missense_Mutation p.E1303K 0.34 tolerated(0.21) benign(0.006) TCGA-YC-A89H-01 16 3799627 3799627 C T CREBBP Splice_Site p.X1279_splice 0.32 TCGA-YC-A89H-01 16 424378 424378 G C TMEM8A Missense_Mutation p.T533R 0.25 deleterious(0) probably_damaging(0.98) TCGA-YC-A89H-01 16 4382411 4382411 G A GLIS2 Missense_Mutation p.D44N 0.17 deleterious(0) possibly_damaging(0.54) TCGA-YC-A89H-01 16 4797450 4797450 C T C16orf71 Nonsense_Mutation p.Q463* 0.29 TCGA-YC-A89H-01 16 48311287 48311287 A G LONP2 Missense_Mutation p.N427S 0.31 tolerated(0.26) benign(0.068) TCGA-YC-A89H-01 16 4833481 4833481 G A SEPT12 Silent p.I236I 0.23 TCGA-YC-A89H-01 16 48381519 48381519 G A LONP2 Silent p.E680E 0.35 TCGA-YC-A89H-01 16 50344595 50344595 C T ADCY7 Intron 0.41 TCGA-YC-A89H-01 16 53265649 53265649 G A CHD9 Missense_Mutation p.E822K 0.28 benign(0.143) TCGA-YC-A89H-01 16 53276901 53276901 C T CHD9 Silent p.L1009L 0.32 TCGA-YC-A89H-01 16 53276919 53276919 C T CHD9 Silent p.L1015L 0.33 TCGA-YC-A89H-01 16 53307581 53307581 A G CHD9 Silent p.V1587V 0.41 TCGA-YC-A89H-01 16 55601488 55601489 TG - CAPNS2 3'UTR 0.27 TCGA-YC-A89H-01 16 55690754 55690754 G A SLC6A2 Missense_Mutation p.D50N 0.33 tolerated(0.57) benign(0) TCGA-YC-A89H-01 16 55735772 55735772 C T SLC6A2 Intron 0.23 TCGA-YC-A89H-01 16 56533796 56533796 G A BBS2 Missense_Mutation p.S474L 0.16 tolerated(1) benign(0) TCGA-YC-A89H-01 16 56533809 56533809 G A BBS2 Missense_Mutation p.H470Y 0.18 deleterious(0.02) benign(0.238) TCGA-YC-A89H-01 16 57415981 57415981 G A CX3CL1 Silent p.P77P 0.31 TCGA-YC-A89H-01 16 57496613 57496613 G A POLR2C 5'UTR 0.33 TCGA-YC-A89H-01 16 58324966 58324966 G T PRSS54 Missense_Mutation p.P54T 0.30 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 16 58565906 58565906 G A CNOT1 Missense_Mutation p.R2045W 0.27 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 16 58633272 58633272 C T CNOT1 5'UTR 0.30 TCGA-YC-A89H-01 16 602974 602974 G A CAPN15 Missense_Mutation p.D1006N 0.28 tolerated(0.12) probably_damaging(0.97) TCGA-YC-A89H-01 16 613462 613462 G A C16orf11 Missense_Mutation p.M56I 0.31 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 16 66884542 66884542 G A CA7 Missense_Mutation p.G113S 0.24 tolerated(0.12) possibly_damaging(0.776) TCGA-YC-A89H-01 16 67241862 67241862 G A LRRC29 Silent p.L139L 0.26 TCGA-YC-A89H-01 16 67263848 67263848 G A FHOD1 Missense_Mutation p.S1087F 0.30 tolerated(0.32) benign(0.003) TCGA-YC-A89H-01 16 67281320 67281320 G A FHOD1 5'UTR 0.38 TCGA-YC-A89H-01 16 67354746 67354746 G A KCTD19 Missense_Mutation p.H16Y 0.27 tolerated(0.14) benign(0.194) TCGA-YC-A89H-01 16 68225039 68225039 T C NFATC3 Missense_Mutation p.S823P 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.809) TCGA-YC-A89H-01 16 68279276 68279276 G A PLA2G15 5'UTR 0.33 TCGA-YC-A89H-01 16 68386284 68386284 C T PRMT7 Missense_Mutation p.S516L 0.71 tolerated(0.15) benign(0.002) TCGA-YC-A89H-01 16 68719222 68719222 C T CDH3 Silent p.I513I 0.35 TCGA-YC-A89H-01 16 68835706 68835706 G A CDH1 Silent p.L99L 0.39 TCGA-YC-A89H-01 16 69154525 69154525 G A CHTF8 Missense_Mutation p.H57Y 0.26 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 16 69390657 69390657 C T TERF2 3'UTR 0.38 TCGA-YC-A89H-01 16 69418596 69418596 C T TERF2 Missense_Mutation p.E123K 0.30 deleterious(0) probably_damaging(0.977) TCGA-YC-A89H-01 16 69687136 69687136 C T NFAT5 Intron 0.20 TCGA-YC-A89H-01 16 70517762 70517762 G A COG4 Silent p.L607L 0.43 TCGA-YC-A89H-01 16 70594423 70594423 G A SF3B3 Missense_Mutation p.D688N 0.37 deleterious(0.01) probably_damaging(0.989) TCGA-YC-A89H-01 16 70602973 70602973 G A SF3B3 Missense_Mutation p.E1065K 0.20 tolerated(0.09) benign(0.099) TCGA-YC-A89H-01 16 70884408 70884408 C A HYDIN Missense_Mutation p.R4198S 0.45 benign(0.008) TCGA-YC-A89H-01 16 712803 712803 G A WDR90 Missense_Mutation p.E1424K 0.67 deleterious(0.02) probably_damaging(0.919) TCGA-YC-A89H-01 16 71482947 71482947 C T ZNF23 Silent p.Q327Q 0.27 TCGA-YC-A89H-01 16 720957 720957 G A RHOT2 Silent p.R235R 0.29 TCGA-YC-A89H-01 16 75654610 75654610 C T ADAT1 Missense_Mutation p.E30K 0.30 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 16 77228934 77228934 C T MON1B Missense_Mutation p.S393L 0.20 tolerated_low_confidence(0.27) benign(0.002) TCGA-YC-A89H-01 16 78466502 78466502 C T WWOX Silent p.F303F 0.25 TCGA-YC-A89H-01 16 81087559 81087559 G A RP11-303E16.5 5'Flank 0.36 TCGA-YC-A89H-01 16 81934286 81934286 C T PLCG2 Silent p.F421F 0.23 TCGA-YC-A89H-01 16 84115402 84115402 G A MBTPS1 Silent p.L466L 0.26 TCGA-YC-A89H-01 16 84118642 84118642 G A MBTPS1 Missense_Mutation p.S411L 0.21 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 16 87902640 87902640 A G SLC7A5 Missense_Mutation p.F130S 0.24 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 16 89293680 89293680 A G ZNF778 Silent p.V300V 0.23 TCGA-YC-A89H-01 16 89849436 89849436 C T FANCA Silent p.K515K 0.31 TCGA-YC-A89H-01 16 9934515 9934515 G C GRIN2A Missense_Mutation p.S547C 0.34 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 17 10600878 10600878 C T SCO1 5'UTR 0.36 TCGA-YC-A89H-01 17 11711175 11711175 C T DNAH9 Silent p.I2849I 0.29 TCGA-YC-A89H-01 17 13972856 13972856 G A COX10 5'UTR 0.33 TCGA-YC-A89H-01 17 14204961 14204961 C T HS3ST3B1 Silent p.V42V 0.41 TCGA-YC-A89H-01 17 15532330 15532330 C T TRIM16 Missense_Mutation p.E432K 0.43 deleterious(0) probably_damaging(0.973) TCGA-YC-A89H-01 17 16075235 16075235 G A NCOR1 Missense_Mutation p.S106L 0.31 possibly_damaging(0.895) TCGA-YC-A89H-01 17 16321046 16321046 G T TRPV2 Missense_Mutation p.G22C 0.23 deleterious(0.02) possibly_damaging(0.867) TCGA-YC-A89H-01 17 1638927 1638927 C T WDR81 Silent p.V1747V 0.35 TCGA-YC-A89H-01 17 16456513 16456513 C T ZNF287 Missense_Mutation p.D315N 0.28 tolerated(0.12) benign(0.154) TCGA-YC-A89H-01 17 18010519 18010519 G A DRG2 Missense_Mutation p.E354K 0.29 tolerated(0.34) benign(0.158) TCGA-YC-A89H-01 17 18045449 18045449 G A MYO15A Silent p.L1902L 0.17 TCGA-YC-A89H-01 17 18057115 18057115 C T MYO15A Missense_Mutation p.P2665S 0.26 unknown(0) TCGA-YC-A89H-01 17 18064645 18064645 G A MYO15A Missense_Mutation p.R3134Q 0.32 unknown(0) TCGA-YC-A89H-01 17 18927627 18927627 C T GRAP Silent p.E123E 0.42 TCGA-YC-A89H-01 17 25748725 25748725 C G TBC1D3P5 RNA 0.32 TCGA-YC-A89H-01 17 27026824 27026824 G A SUPT6H Missense_Mutation p.E1492K 0.25 deleterious(0.02) benign(0.146) TCGA-YC-A89H-01 17 27052356 27052356 C T TLCD1 Missense_Mutation p.R109Q 0.33 tolerated(0.08) benign(0.041) TCGA-YC-A89H-01 17 27822611 27822611 G A TAOK1 Missense_Mutation p.V289M 0.28 deleterious(0) possibly_damaging(0.868) TCGA-YC-A89H-01 17 27943841 27943841 C T CORO6 Missense_Mutation p.E295K 0.33 deleterious(0) probably_damaging(0.985) TCGA-YC-A89H-01 17 28788233 28788233 C T CPD Silent p.I1178I 0.21 TCGA-YC-A89H-01 17 2908728 2908748 CCAGAAGGTAGGACACTCTTC - RAP1GAP2 Splice_Site p.X423_splice 0.19 TCGA-YC-A89H-01 17 29220978 29220978 C T ATAD5 Nonsense_Mutation p.Q1703* 0.31 TCGA-YC-A89H-01 17 29233238 29233238 C T TEFM 5'UTR 0.41 TCGA-YC-A89H-01 17 3195643 3195643 G A OR3A1 Silent p.S78S 0.29 TCGA-YC-A89H-01 17 35545343 35545343 C T ACACA Silent p.L1550L 0.26 TCGA-YC-A89H-01 17 35872428 35872428 G A DUSP14 Missense_Mutation p.M18I 0.31 tolerated(0.4) benign(0.017) TCGA-YC-A89H-01 17 36002187 36002187 C T DDX52 Missense_Mutation p.E80K 0.26 tolerated(0.43) benign(0.001) TCGA-YC-A89H-01 17 37070604 37070604 G A LASP1 Silent p.K128K 0.46 TCGA-YC-A89H-01 17 37357472 37357472 C T RPL19 Silent p.L4L 0.24 TCGA-YC-A89H-01 17 37619172 37619172 C T CDK12 Missense_Mutation p.S283L 0.23 unknown(0) TCGA-YC-A89H-01 17 37619230 37619230 C T CDK12 Silent p.V302V 0.37 TCGA-YC-A89H-01 17 37687209 37687209 G A CDK12 Silent p.V1371V 0.29 TCGA-YC-A89H-01 17 39041105 39041105 C T KRT20 Silent p.P111P 0.38 TCGA-YC-A89H-01 17 39183179 39183179 C T KRTAP1-5 Missense_Mutation p.E77K 0.26 tolerated(0.9) unknown(0) TCGA-YC-A89H-01 17 39551521 39551521 G A KRT31 Silent p.I284I 0.33 TCGA-YC-A89H-01 17 39577231 39577231 A G KRT37 Missense_Mutation p.C417R 0.23 deleterious(0.02) possibly_damaging(0.831) TCGA-YC-A89H-01 17 39658504 39658504 A - KRT13 Intron 0.35 TCGA-YC-A89H-01 17 39675064 39675064 G A KRT15 Silent p.L6L 0.31 TCGA-YC-A89H-01 17 39680241 39680246 GGCAGC - KRT19 In_Frame_Del p.A318_A319del 0.23 TCGA-YC-A89H-01 17 39780589 39780589 G A KRT17 Missense_Mutation p.S58F 0.36 tolerated(0.21) possibly_damaging(0.831) TCGA-YC-A89H-01 17 40025731 40025731 G A ACLY Missense_Mutation p.S1016L 0.29 deleterious(0) possibly_damaging(0.756) TCGA-YC-A89H-01 17 40275305 40275305 G A HSPB9 Missense_Mutation p.R146K 0.26 tolerated(0.47) benign(0.002) TCGA-YC-A89H-01 17 40353671 40353671 G C STAT5B 3'UTR 0.38 TCGA-YC-A89H-01 17 40729545 40729545 C T PSMC3IP Silent p.Q23Q 0.38 TCGA-YC-A89H-01 17 40735518 40735518 G A FAM134C Nonsense_Mutation p.Q270* 0.33 TCGA-YC-A89H-01 17 40850999 40850999 A T CNTNAP1 3'UTR 0.29 TCGA-YC-A89H-01 17 4098363 4098363 C T ANKFY1 Missense_Mutation p.V470M 0.41 deleterious(0.01) possibly_damaging(0.686) TCGA-YC-A89H-01 17 41003215 41003215 T C AOC3 5'UTR 0.43 TCGA-YC-A89H-01 17 4100772 4100772 G A ANKFY1 Silent p.Y375Y 0.37 TCGA-YC-A89H-01 17 41610079 41610079 C T ETV4 Silent p.V258V 0.25 TCGA-YC-A89H-01 17 42153170 42153170 C T G6PC3 Missense_Mutation p.S267F 0.39 tolerated(0.75) benign(0.069) TCGA-YC-A89H-01 17 42287600 42287600 A G UBTF Silent p.N506N 0.33 TCGA-YC-A89H-01 17 43004422 43004422 C T KIF18B Missense_Mutation p.M767I 0.35 tolerated(0.11) benign(0.045) TCGA-YC-A89H-01 17 43011904 43011904 T C KIF18B Missense_Mutation p.T220A 0.25 deleterious(0.04) benign(0.133) TCGA-YC-A89H-01 17 43226634 43226634 A T HEXIM1 Missense_Mutation p.E26V 0.34 deleterious_low_confidence(0) benign(0.155) TCGA-YC-A89H-01 17 44111634 44111634 C T KANSL1 Silent p.R853R 0.28 TCGA-YC-A89H-01 17 44159890 44159890 C T KANSL1 Missense_Mutation p.E484K 0.28 tolerated(0.1) possibly_damaging(0.736) TCGA-YC-A89H-01 17 4439674 4439674 C T SPNS2 Silent p.L520L 0.36 TCGA-YC-A89H-01 17 44626317 44626317 G A LRRC37A2 Missense_Mutation p.R1271K 0.09 tolerated(0.65) benign(0.043) TCGA-YC-A89H-01 17 45669341 45669341 C T NPEPPS Missense_Mutation p.S427F 0.16 deleterious(0.01) possibly_damaging(0.835) TCGA-YC-A89H-01 17 45993860 45993860 C A SP2 Missense_Mutation p.S141R 0.39 deleterious(0.01) benign(0.005) TCGA-YC-A89H-01 17 46152423 46152423 C T CBX1 Missense_Mutation p.E120K 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-YC-A89H-01 17 46607716 46607716 T G HOXB1 Missense_Mutation p.K184T 0.32 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 17 46607978 46607978 G A HOXB1 Nonsense_Mutation p.Q97* 0.33 TCGA-YC-A89H-01 17 46919234 46919234 G T CALCOCO2 Missense_Mutation p.W55C 0.28 deleterious(0.02) possibly_damaging(0.5) TCGA-YC-A89H-01 17 47007863 47007863 C G SNF8 Missense_Mutation p.E251Q 0.17 deleterious_low_confidence(0.03) benign(0.295) TCGA-YC-A89H-01 17 47394625 47394625 C T ZNF652 Missense_Mutation p.E155K 0.32 tolerated(0.24) benign(0.015) TCGA-YC-A89H-01 17 4789836 4789836 C T MINK1 Silent p.F288F 0.34 TCGA-YC-A89H-01 17 4837513 4837513 C T GP1BA Silent p.L538L 0.37 TCGA-YC-A89H-01 17 4842182 4842182 C T SLC25A11 Missense_Mutation p.D113N 0.39 tolerated(0.29) benign(0.003) TCGA-YC-A89H-01 17 48776767 48776767 A T ANKRD40 Missense_Mutation p.N257K 0.26 deleterious(0) benign(0.081) TCGA-YC-A89H-01 17 48777109 48777109 C T ANKRD40 Missense_Mutation p.M143I 0.27 tolerated(0.46) benign(0) TCGA-YC-A89H-01 17 4883865 4883865 G A CAMTA2 Missense_Mutation p.S274F 0.25 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 17 48941033 48941033 C T TOB1 Missense_Mutation p.D116N 0.39 deleterious(0.01) benign(0.01) TCGA-YC-A89H-01 17 5322865 5322865 G A NUP88 Missense_Mutation p.P36S 0.24 tolerated(0.3) benign(0.002) TCGA-YC-A89H-01 17 53798237 53798237 G A TMEM100 Silent p.F65F 0.21 TCGA-YC-A89H-01 17 55055498 55055498 G A SCPEP1 5'UTR 0.61 TCGA-YC-A89H-01 17 56060382 56060382 A C VEZF1 Missense_Mutation p.L136V 0.35 tolerated(0.14) probably_damaging(0.978) TCGA-YC-A89H-01 17 56395643 56395643 C T BZRAP1 Missense_Mutation p.E624K 0.50 deleterious(0) possibly_damaging(0.766) TCGA-YC-A89H-01 17 56649438 56649438 G A TEX14 Silent p.I1233I 0.38 TCGA-YC-A89H-01 17 57743856 57743856 C T CLTC Silent p.L600L 0.38 TCGA-YC-A89H-01 17 57915729 57915729 C T VMP1 Missense_Mutation p.H350Y 0.23 deleterious(0) probably_damaging(0.953) TCGA-YC-A89H-01 17 57917349 57917349 G A VMP1 3'UTR 0.26 TCGA-YC-A89H-01 17 58011538 58011538 G A RPS6KB1 Silent p.V232V 0.24 TCGA-YC-A89H-01 17 60112827 60112827 G A MED13 Nonsense_Mutation p.Q205* 0.32 TCGA-YC-A89H-01 17 61497604 61497604 G A TANC2 Missense_Mutation p.E1421K 0.29 deleterious_low_confidence(0) benign(0.024) TCGA-YC-A89H-01 17 61498589 61498589 A G TANC2 Missense_Mutation p.H1749R 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.777) TCGA-YC-A89H-01 17 61883973 61883973 C T DDX42 Missense_Mutation p.R269W 0.39 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 17 61890786 61890786 C T DDX42 Missense_Mutation p.S625F 0.33 deleterious(0) benign(0.241) TCGA-YC-A89H-01 17 62020265 62020265 C T SCN4A Silent p.K1403K 0.32 TCGA-YC-A89H-01 17 62141358 62141364 AGTAATT - ERN1 Frame_Shift_Del p.N357Gfs*3 0.14 TCGA-YC-A89H-01 17 62499353 62499353 C T DDX5 Missense_Mutation p.D255N 0.22 deleterious(0) probably_damaging(0.95) TCGA-YC-A89H-01 17 62499939 62499939 C T DDX5 Silent p.E163E 0.33 TCGA-YC-A89H-01 17 62522265 62522265 G A CEP95 Missense_Mutation p.E367K 0.31 deleterious(0.01) benign(0.081) TCGA-YC-A89H-01 17 62576975 62576975 G A SMURF2 Missense_Mutation p.S235L 0.32 tolerated(0.08) benign(0.133) TCGA-YC-A89H-01 17 62782800 62782800 C T hsa-mir-6080 5'Flank 0.16 TCGA-YC-A89H-01 17 62964481 62964481 C T AMZ2P1 RNA 0.34 TCGA-YC-A89H-01 17 67411085 67411085 A C MAP2K6 5'UTR 0.12 TCGA-YC-A89H-01 17 6919820 6919820 G A C17orf49 Silent p.Q75Q 0.40 TCGA-YC-A89H-01 17 7127670 7127670 C T ACADVL Silent p.L544L 0.27 TCGA-YC-A89H-01 17 7145617 7145617 G A GABARAP Silent p.F11F 0.40 TCGA-YC-A89H-01 17 72256357 72256357 C T TTYH2 3'UTR 0.23 TCGA-YC-A89H-01 17 7232399 7232399 C T NEURL4 Missense_Mutation p.R78Q 0.23 tolerated(0.59) possibly_damaging(0.77) TCGA-YC-A89H-01 17 72758289 72758289 C T SLC9A3R1 Missense_Mutation p.R194W 0.26 deleterious(0) probably_damaging(0.916) TCGA-YC-A89H-01 17 73016661 73016661 G A ICT1 Missense_Mutation p.D149N 0.47 deleterious(0.02) benign(0.151) TCGA-YC-A89H-01 17 73016687 73016687 G A ICT1 Missense_Mutation p.M157I 0.23 tolerated(0.31) benign(0.042) TCGA-YC-A89H-01 17 7339832 7339832 G A TMEM102 Silent p.E178E 0.45 TCGA-YC-A89H-01 17 73520479 73520479 G A TSEN54 Missense_Mutation p.D523N 0.32 deleterious(0.02) benign(0.079) TCGA-YC-A89H-01 17 7360041 7360041 G A CHRNB1 Silent p.%3D 0.43 TCGA-YC-A89H-01 17 73723841 73723841 C A ITGB4 Missense_Mutation p.P125Q 0.35 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 17 74005257 74005257 C T EVPL Silent p.K1343K 0.33 TCGA-YC-A89H-01 17 74019643 74019643 G A EVPL Silent p.L97L 0.34 TCGA-YC-A89H-01 17 74057230 74057230 C T SRP68 Missense_Mutation p.E239K 0.40 deleterious(0) probably_damaging(0.994) TCGA-YC-A89H-01 17 7416557 7416557 A G POLR2A Silent p.S1658S 0.27 TCGA-YC-A89H-01 17 74274245 74274245 G A QRICH2 Missense_Mutation p.R1482W 0.29 deleterious(0.02) possibly_damaging(0.448) TCGA-YC-A89H-01 17 74276791 74276791 C T QRICH2 Missense_Mutation p.E1303K 0.25 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 17 7460504 7460504 C T TNFSF12 Intron 0.41 TCGA-YC-A89H-01 17 74729144 74729144 C T METTL23 Missense_Mutation p.H57Y 0.31 tolerated(0.06) benign(0.005) TCGA-YC-A89H-01 17 74734388 74734388 G A RP11-318A15.7 Missense_Mutation p.G88E 0.35 tolerated_low_confidence(0.11) benign(0.258) TCGA-YC-A89H-01 17 76794544 76794544 C T USP36 Silent p.V1110V 0.28 TCGA-YC-A89H-01 17 77077004 77077004 C T ENGASE Intron 0.25 TCGA-YC-A89H-01 17 77082025 77082042 CTGCCAGCCTGCTGGCCC - ENGASE In_Frame_Del p.A610_P615del 0.16 TCGA-YC-A89H-01 17 77082219 77082219 C T ENGASE Missense_Mutation p.P674S 0.48 tolerated(0.12) benign(0.004) TCGA-YC-A89H-01 17 7752197 7752197 C T KDM6B Missense_Mutation p.S864F 0.34 possibly_damaging(0.683) TCGA-YC-A89H-01 17 78165203 78165203 G A CARD14 Missense_Mutation p.E391K 0.28 deleterious(0) possibly_damaging(0.856) TCGA-YC-A89H-01 17 78332248 78332248 C T RNF213 Silent p.L3675L 0.30 TCGA-YC-A89H-01 17 78820340 78820340 G A RPTOR Missense_Mutation p.R427Q 0.22 deleterious(0.01) benign(0.241) TCGA-YC-A89H-01 17 7907398 7907398 C T GUCY2D Missense_Mutation p.S317F 0.39 tolerated(0.06) benign(0.232) TCGA-YC-A89H-01 17 79219529 79219529 G A SLC38A10 Nonsense_Mutation p.Q1063* 0.30 TCGA-YC-A89H-01 17 79478429 79478429 C T ACTG1 Missense_Mutation p.R196Q 0.43 deleterious_low_confidence(0.01) benign(0.079) TCGA-YC-A89H-01 17 79660731 79660731 G C HGS Silent p.L263L 0.50 TCGA-YC-A89H-01 17 8076888 8076888 G A TMEM107 3'Flank 0.23 TCGA-YC-A89H-01 17 8157370 8157370 G A PFAS Missense_Mutation p.E39K 0.24 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 17 8219200 8219200 C T ARHGEF15 Nonsense_Mutation p.Q517* 0.62 TCGA-YC-A89H-01 17 8273318 8273318 C T KRBA2 Missense_Mutation p.G205R 0.33 deleterious(0.03) possibly_damaging(0.697) TCGA-YC-A89H-01 17 8273399 8273399 G A KRBA2 Missense_Mutation p.H178Y 0.39 deleterious(0.01) possibly_damaging(0.827) TCGA-YC-A89H-01 17 8273673 8273673 C T KRBA2 Silent p.Q86Q 0.32 TCGA-YC-A89H-01 17 8383586 8383586 C T MYH10 Silent p.K1813K 0.33 TCGA-YC-A89H-01 17 8738654 8738654 G A PIK3R6 Missense_Mutation p.S194F 0.29 tolerated(0.33) possibly_damaging(0.882) TCGA-YC-A89H-01 18 10697863 10697863 C T PIEZO2 Missense_Mutation p.R2124Q 0.46 tolerated(0.08) benign(0.01) TCGA-YC-A89H-01 18 12308792 12308792 C T TUBB6 Missense_Mutation p.S55L 0.48 deleterious_low_confidence(0.05) benign(0.007) TCGA-YC-A89H-01 18 19348694 19348694 G A MIB1 Missense_Mutation p.G171E 0.40 deleterious(0.03) probably_damaging(0.995) TCGA-YC-A89H-01 18 21660720 21660720 C T TTC39C Missense_Mutation p.S211F 0.31 deleterious(0.03) benign(0.435) TCGA-YC-A89H-01 18 21660722 21660722 C T TTC39C Silent p.L212L 0.31 TCGA-YC-A89H-01 18 22642656 22642656 C T ZNF521 3'UTR 0.24 TCGA-YC-A89H-01 18 24436286 24436286 T C AQP4 Silent p.V287V 0.35 TCGA-YC-A89H-01 18 28737383 28737383 C T DSC1 Missense_Mutation p.R101K 0.36 tolerated(1) benign(0.002) TCGA-YC-A89H-01 18 28737511 28737511 C G DSC1 Silent p.S58S 0.33 TCGA-YC-A89H-01 18 29511438 29511438 T C TRAPPC8 Missense_Mutation p.K69R 0.30 tolerated(1) benign(0.003) TCGA-YC-A89H-01 18 29522643 29522643 C T TRAPPC8 Missense_Mutation p.E29K 0.21 deleterious(0.01) possibly_damaging(0.676) TCGA-YC-A89H-01 18 31251800 31251800 C T ASXL3 Missense_Mutation p.H229Y 0.27 probably_damaging(0.993) TCGA-YC-A89H-01 18 31326230 31326230 C T ASXL3 Nonsense_Mutation p.Q2140* 0.24 TCGA-YC-A89H-01 18 34376852 34376852 C T TPGS2 Silent p.Q273Q 0.31 TCGA-YC-A89H-01 18 34408738 34408738 G A TPGS2 5'UTR 0.38 TCGA-YC-A89H-01 18 3452266 3452266 G A TGIF1 Missense_Mutation p.E97K 0.56 tolerated_low_confidence(0.22) benign(0) TCGA-YC-A89H-01 18 43310411 43310411 G A SLC14A1 Missense_Mutation p.M98I 0.30 deleterious(0.02) possibly_damaging(0.891) TCGA-YC-A89H-01 18 43490547 43490547 C T EPG5 Missense_Mutation p.E1382K 0.29 tolerated(0.39) possibly_damaging(0.533) TCGA-YC-A89H-01 18 45368137 45368137 C T SMAD2 3'UTR 0.35 TCGA-YC-A89H-01 18 47375979 47375979 T G MYO5B Missense_Mutation p.K1425Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 18 66344331 66344331 C T TMX3 Missense_Mutation p.D402N 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-YC-A89H-01 18 72913888 72913888 G A ZADH2 Missense_Mutation p.S206F 0.30 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 18 73130866 73130866 T G SMIM21 Missense_Mutation p.E45D 0.33 tolerated_low_confidence(0.49) benign(0.005) TCGA-YC-A89H-01 18 74625763 74625763 G A ZNF236 Silent p.S988S 0.29 TCGA-YC-A89H-01 18 77474547 77474547 G C CTDP1 Missense_Mutation p.E363Q 0.28 deleterious(0.01) possibly_damaging(0.772) TCGA-YC-A89H-01 18 9257983 9257983 C T ANKRD12 Missense_Mutation p.S1573L 0.36 tolerated_low_confidence(0.19) benign(0.003) TCGA-YC-A89H-01 19 10127761 10127761 G C RDH8 Missense_Mutation p.K64N 0.23 deleterious(0.01) possibly_damaging(0.749) TCGA-YC-A89H-01 19 10206671 10206671 C T ANGPTL6 Missense_Mutation p.G190D 0.30 tolerated(0.4) benign(0.003) TCGA-YC-A89H-01 19 10226172 10226172 G A EIF3G Silent p.L310L 0.36 TCGA-YC-A89H-01 19 10404529 10404529 C T ICAM5 Missense_Mutation p.R541C 0.32 deleterious(0.04) possibly_damaging(0.79) TCGA-YC-A89H-01 19 1094035 1094035 C T POLR2E Missense_Mutation p.D34N 0.30 tolerated(0.51) benign(0.012) TCGA-YC-A89H-01 19 1094041 1094041 C T POLR2E Missense_Mutation p.E32K 0.25 deleterious(0) possibly_damaging(0.783) TCGA-YC-A89H-01 19 11353980 11353980 G C DOCK6 Missense_Mutation p.S447C 0.44 deleterious(0.01) possibly_damaging(0.662) TCGA-YC-A89H-01 19 11533491 11533491 G A CCDC151 Silent p.F385F 0.19 TCGA-YC-A89H-01 19 11541766 11541766 G A CCDC151 Missense_Mutation p.R107C 0.38 deleterious(0) probably_damaging(0.91) TCGA-YC-A89H-01 19 12767796 12767796 G A MAN2B1 Silent p.I498I 0.44 TCGA-YC-A89H-01 19 12774193 12774193 G A MAN2B1 Missense_Mutation p.R283C 0.28 tolerated(0.05) possibly_damaging(0.762) TCGA-YC-A89H-01 19 12939527 12939527 C T RTBDN Silent p.L135L 0.36 TCGA-YC-A89H-01 19 13059013 13059013 C T RAD23A Missense_Mutation p.S86L 0.24 tolerated(0.15) benign(0.047) TCGA-YC-A89H-01 19 15053034 15053034 C T OR7C2 Missense_Mutation p.S245L 0.35 tolerated_low_confidence(0.14) benign(0.042) TCGA-YC-A89H-01 19 15230323 15230323 G T ILVBL Missense_Mutation p.Q274K 0.21 tolerated(0.24) benign(0.058) TCGA-YC-A89H-01 19 15298144 15298144 C T NOTCH3 Missense_Mutation p.E538K 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-YC-A89H-01 19 15465709 15465709 G A AKAP8 3'UTR 0.40 TCGA-YC-A89H-01 19 15562670 15562670 G A RASAL3 Missense_Mutation p.T991M 0.36 tolerated_low_confidence(0.11) benign(0.2) TCGA-YC-A89H-01 19 15563582 15563582 C T RASAL3 Silent p.Q905Q 0.44 TCGA-YC-A89H-01 19 15760829 15760829 G A CYP4F3 Missense_Mutation p.D252N 0.27 tolerated(0.2) benign(0.021) TCGA-YC-A89H-01 19 15760928 15760928 G A CYP4F3 Missense_Mutation p.D285N 0.34 tolerated(0.09) benign(0.073) TCGA-YC-A89H-01 19 1615467 1615467 C T TCF3 Missense_Mutation p.E547K 0.24 deleterious(0) benign(0.297) TCGA-YC-A89H-01 19 17283681 17283681 C T MYO9B Silent p.F683F 0.37 TCGA-YC-A89H-01 19 17450306 17450306 C T GTPBP3 Missense_Mutation p.P323L 0.37 deleterious(0.03) possibly_damaging(0.755) TCGA-YC-A89H-01 19 1811633 1811633 G A ATP8B3 Nonsense_Mutation p.Q35* 0.54 TCGA-YC-A89H-01 19 1828430 1828430 G A REXO1 Missense_Mutation p.R120C 0.31 deleterious(0.03) benign(0.361) TCGA-YC-A89H-01 19 18652507 18652507 C T FKBP8 Missense_Mutation p.E92K 0.43 deleterious(0.01) benign(0.144) TCGA-YC-A89H-01 19 18963847 18963847 A T UPF1 Missense_Mutation p.I342F 0.35 deleterious(0.03) benign(0.076) TCGA-YC-A89H-01 19 19390135 19390135 C T SUGP1 Nonsense_Mutation p.W472* 0.25 TCGA-YC-A89H-01 19 20959146 20959146 C T ZNF66 5'Flank 0.35 TCGA-YC-A89H-01 19 21605967 21605967 C G ZNF493 Nonsense_Mutation p.S169* 0.31 TCGA-YC-A89H-01 19 21991775 21991775 G A ZNF43 Missense_Mutation p.S355L 0.34 deleterious(0.03) benign(0.126) TCGA-YC-A89H-01 19 2276270 2276270 G A C19orf35 Silent p.F277F 0.55 TCGA-YC-A89H-01 19 23544609 23544609 G A ZNF91 Missense_Mutation p.S391L 0.36 tolerated(0.05) benign(0.307) TCGA-YC-A89H-01 19 23837214 23837214 C T ZNF675 Missense_Mutation p.C174Y 0.39 deleterious(0.05) benign(0.008) TCGA-YC-A89H-01 19 2438447 2438447 C T LMNB2 Missense_Mutation p.E162K 0.44 tolerated(0.62) possibly_damaging(0.562) TCGA-YC-A89H-01 19 32845726 32845726 C T ZNF507 Nonsense_Mutation p.R664* 0.31 TCGA-YC-A89H-01 19 334451 334451 C T MIER2 Silent p.S64S 0.22 TCGA-YC-A89H-01 19 34983944 34983944 A T WTIP Nonsense_Mutation p.R258* 0.32 TCGA-YC-A89H-01 19 3600291 3600291 G A TBXA2R Silent p.F114F 0.48 TCGA-YC-A89H-01 19 36106037 36106037 A G HAUS5 Missense_Mutation p.T105A 0.45 tolerated(0.47) benign(0.014) TCGA-YC-A89H-01 19 36142139 36142139 C T COX6B1 5'UTR 0.19 TCGA-YC-A89H-01 19 36236834 36236834 G A PSENEN Translation_Start_Site p.M1? 0.29 deleterious(0.01) probably_damaging(0.926) TCGA-YC-A89H-01 19 36236879 36236879 G A PSENEN Silent p.R16R 0.26 TCGA-YC-A89H-01 19 38055618 38055618 G A ZNF571 Missense_Mutation p.S571L 0.53 deleterious(0.04) benign(0.081) TCGA-YC-A89H-01 19 38782620 38782640 CTGGTGAAGAACACATATGTC - SPINT2 In_Frame_Del p.V246_L252del 0.27 TCGA-YC-A89H-01 19 38794891 38794891 C T C19orf33 5'UTR 0.16 TCGA-YC-A89H-01 19 38882717 38882717 G A SPRED3 Silent p.Q103Q 0.57 TCGA-YC-A89H-01 19 38980823 38980823 G A RYR1 Silent p.R1974R 0.25 TCGA-YC-A89H-01 19 38997018 38997018 G T RYR1 Splice_Site p.X2872_splice 0.57 TCGA-YC-A89H-01 19 3979425 3979425 C T EEF2 Missense_Mutation p.E539K 0.29 deleterious(0.04) probably_damaging(0.915) TCGA-YC-A89H-01 19 39804608 39804608 G A LRFN1 Nonsense_Mutation p.Q457* 0.19 TCGA-YC-A89H-01 19 39819205 39819205 C T GMFG Intron 0.58 TCGA-YC-A89H-01 19 39882100 39882100 C T MED29 Missense_Mutation p.S34L 0.21 deleterious_low_confidence(0) benign(0.307) TCGA-YC-A89H-01 19 40904595 40904595 G A PRX Silent p.L105L 0.48 TCGA-YC-A89H-01 19 41008817 41008817 G A SPTBN4 Missense_Mutation p.E447K 0.22 deleterious(0) possibly_damaging(0.67) TCGA-YC-A89H-01 19 41223935 41223935 G A ITPKC Missense_Mutation p.E299K 0.46 deleterious_low_confidence(0.01) benign(0.014) TCGA-YC-A89H-01 19 41250013 41250013 G A C19orf54 Silent p.L202L 0.26 TCGA-YC-A89H-01 19 41622400 41622400 G A CYP2F1 Missense_Mutation p.G71E 0.21 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 19 41884272 41884272 G A TMEM91 Missense_Mutation p.E20K 0.51 deleterious_low_confidence(0.03) benign(0.036) TCGA-YC-A89H-01 19 42213653 42213653 C T CEA Missense_Mutation p.S40F 0.52 deleterious(0) probably_damaging(0.984) TCGA-YC-A89H-01 19 42703717 42703717 C T DEDD2 Missense_Mutation p.R285Q 0.49 deleterious(0.01) probably_damaging(0.953) TCGA-YC-A89H-01 19 42796593 42796593 C T CIC Silent p.P1050P 0.55 TCGA-YC-A89H-01 19 43372081 43372081 T A PSG1 3'UTR 0.26 TCGA-YC-A89H-01 19 44008120 44008120 C T PHLDB3 Missense_Mutation p.E51K 0.54 deleterious(0.04) benign(0.343) TCGA-YC-A89H-01 19 44351783 44351783 G A ZNF283 Missense_Mutation p.E344K 0.45 tolerated(0.06) benign(0.059) TCGA-YC-A89H-01 19 44470884 44470884 G A ZNF221 Silent p.L410L 0.25 TCGA-YC-A89H-01 19 45184496 45184496 C T CEACAM19 Intron 0.46 TCGA-YC-A89H-01 19 45555366 45555366 G A CLASRP Missense_Mutation p.R46Q 0.42 tolerated(0.08) possibly_damaging(0.897) TCGA-YC-A89H-01 19 45574784 45574784 G A ZNF296 3'UTR 0.28 TCGA-YC-A89H-01 19 45852765 45852765 G A KLC3 Missense_Mutation p.E350K 0.23 tolerated(0.08) possibly_damaging(0.644) TCGA-YC-A89H-01 19 45856356 45856356 C G ERCC2 Missense_Mutation p.E606Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 19 45883359 45883359 G A PPP1R13L 3'UTR 0.46 TCGA-YC-A89H-01 19 45901532 45901532 C T PPP1R13L Missense_Mutation p.M15I 0.43 deleterious_low_confidence(0.05) benign(0.001) TCGA-YC-A89H-01 19 46094386 46094386 G A GPR4 Missense_Mutation p.R247C 0.42 deleterious(0) probably_damaging(0.995) TCGA-YC-A89H-01 19 46180341 46180341 C T GIPR Silent p.F256F 0.17 TCGA-YC-A89H-01 19 46271321 46271321 C T SIX5 Missense_Mutation p.G261E 0.47 tolerated(0.05) benign(0.274) TCGA-YC-A89H-01 19 48832733 48832733 C T EMP3 Silent p.L102L 0.55 TCGA-YC-A89H-01 19 48833652 48833652 C T EMP3 Silent p.F139F 0.28 TCGA-YC-A89H-01 19 49119376 49119376 G A RPL18 Silent p.A127A 0.26 TCGA-YC-A89H-01 19 49207110 49207110 G A FUT2 Silent p.T299T 0.43 TCGA-YC-A89H-01 19 49334996 49334996 C T HSD17B14 Missense_Mutation p.E100K 0.21 deleterious(0.01) benign(0.361) TCGA-YC-A89H-01 19 49356985 49356985 T A PLEKHA4 Missense_Mutation p.Q427L 0.57 deleterious(0) possibly_damaging(0.694) TCGA-YC-A89H-01 19 49377554 49377554 A C PPP1R15A Missense_Mutation p.D355A 0.55 deleterious(0.02) benign(0.026) TCGA-YC-A89H-01 19 49631305 49631305 C T PPFIA3 Missense_Mutation p.R59W 0.42 deleterious(0) probably_damaging(0.994) TCGA-YC-A89H-01 19 49637359 49637359 G A PPFIA3 Silent p.L438L 0.24 TCGA-YC-A89H-01 19 50210834 50210834 T - CPT1C Frame_Shift_Del p.V468Gfs*62 0.33 TCGA-YC-A89H-01 19 50385408 50385408 C T TBC1D17 Missense_Mutation p.S213L 0.52 deleterious(0.02) probably_damaging(0.986) TCGA-YC-A89H-01 19 5041208 5041208 C T KDM4B Silent p.L126L 0.34 TCGA-YC-A89H-01 19 50920507 50920507 G A POLD1 Missense_Mutation p.E1067K 0.47 tolerated(0.05) possibly_damaging(0.698) TCGA-YC-A89H-01 19 51462506 51462506 G A KLK6 Missense_Mutation p.P217S 0.48 deleterious(0.01) probably_damaging(1) TCGA-YC-A89H-01 19 52618886 52618886 G A ZNF616 Missense_Mutation p.H511Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 19 52825923 52825923 C T ZNF480 Nonsense_Mutation p.Q474* 0.52 TCGA-YC-A89H-01 19 53384578 53384578 A G ZNF320 Silent p.H267H 0.24 TCGA-YC-A89H-01 19 53572796 53572796 G A ZNF160 Missense_Mutation p.H331Y 0.55 deleterious(0) probably_damaging(0.961) TCGA-YC-A89H-01 19 53625765 53625765 G A ZNF415 5'UTR 0.57 TCGA-YC-A89H-01 19 5456580 5456580 G A ZNRF4 Missense_Mutation p.D360N 0.21 deleterious(0.01) probably_damaging(0.94) TCGA-YC-A89H-01 19 54618048 54618048 G A TFPT Missense_Mutation p.S19L 0.22 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 19 54657423 54657423 G A CNOT3 Intron 0.21 TCGA-YC-A89H-01 19 55143514 55143514 G A LILRB1 Missense_Mutation p.E163K 0.28 tolerated(1) benign(0) TCGA-YC-A89H-01 19 55399707 55399707 G A FCAR Intron 0.44 TCGA-YC-A89H-01 19 55742824 55742824 G A PPP6R1 Nonsense_Mutation p.Q805* 0.44 TCGA-YC-A89H-01 19 55805596 55805596 C T BRSK1 Missense_Mutation p.A197V 0.19 deleterious(0.04) possibly_damaging(0.829) TCGA-YC-A89H-01 19 56410268 56410268 C T NLRP13 Missense_Mutation p.G942E 0.49 tolerated(0.51) benign(0.09) TCGA-YC-A89H-01 19 56732987 56732987 A G ZSCAN5A Missense_Mutation p.L483S 0.44 deleterious(0.04) benign(0.4) TCGA-YC-A89H-01 19 56934425 56934425 G A ZNF583 Missense_Mutation p.G133E 0.42 tolerated(1) benign(0.005) TCGA-YC-A89H-01 19 56935216 56935216 C T ZNF583 Nonsense_Mutation p.Q397* 0.41 TCGA-YC-A89H-01 19 57932112 57932112 G A ZNF17 Missense_Mutation p.E418K 0.20 deleterious(0.04) benign(0.025) TCGA-YC-A89H-01 19 580458 580458 C T BSG Missense_Mutation p.H218Y 0.32 deleterious(0) benign(0.003) TCGA-YC-A89H-01 19 58153062 58153062 G A ZNF211 Missense_Mutation p.G468E 0.22 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 19 58213755 58213755 G A ZNF154 Missense_Mutation p.P188S 0.56 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 19 58370753 58370753 G A ZNF587 Missense_Mutation p.E325K 0.27 tolerated(0.1) possibly_damaging(0.874) TCGA-YC-A89H-01 19 58490810 58490810 G A ZNF606 Missense_Mutation p.S413F 0.48 deleterious(0) probably_damaging(0.991) TCGA-YC-A89H-01 19 58904543 58904543 C T RPS5 Silent p.L103L 0.42 TCGA-YC-A89H-01 19 58966867 58966867 G A ZNF324B Missense_Mutation p.G186R 0.40 tolerated(0.56) benign(0.013) TCGA-YC-A89H-01 19 58988578 58988578 G A ZNF446 5'UTR 0.37 TCGA-YC-A89H-01 19 6161265 6161265 C A ACSBG2 Missense_Mutation p.Q183K 0.24 deleterious(0.02) possibly_damaging(0.673) TCGA-YC-A89H-01 19 619621 619621 C T POLRMT Missense_Mutation p.E1011K 0.31 deleterious(0.01) possibly_damaging(0.893) TCGA-YC-A89H-01 19 7166247 7166247 C T INSR Silent p.V593V 0.22 TCGA-YC-A89H-01 19 7682734 7682734 G A CAMSAP3 Missense_Mutation p.E1208K 0.28 deleterious(0) benign(0.17) TCGA-YC-A89H-01 19 8386854 8386854 G A RPS28 Missense_Mutation p.M35I 0.60 tolerated(0.13) benign(0.407) TCGA-YC-A89H-01 19 860944 860944 G C CFD Missense_Mutation p.R99P 0.42 tolerated(0.12) possibly_damaging(0.886) TCGA-YC-A89H-01 19 891080 891080 C G MED16 Missense_Mutation p.V18L 0.23 deleterious(0.03) benign(0.167) TCGA-YC-A89H-01 19 897527 897527 C T R3HDM4 Silent p.E239E 0.32 TCGA-YC-A89H-01 19 9076768 9076768 C T MUC16 Missense_Mutation p.G3560S 0.40 unknown(0) TCGA-YC-A89H-01 1 100155113 100155113 C G PALMD Missense_Mutation p.L433V 0.41 tolerated(0.08) possibly_damaging(0.547) TCGA-YC-A89H-01 1 100181193 100181193 G A FRRS1 Silent p.L424L 0.34 TCGA-YC-A89H-01 1 100316448 100316448 C T AGL 5'UTR 0.22 TCGA-YC-A89H-01 1 10093740 10093740 G A UBE4B Silent p.L4L 0.18 TCGA-YC-A89H-01 1 10211543 10211543 G A UBE4B Silent p.Q950Q 0.28 TCGA-YC-A89H-01 1 10364575 10364575 G C KIF1B Intron 0.29 TCGA-YC-A89H-01 1 10521686 10521686 T A DFFA Missense_Mutation p.Q286L 0.29 tolerated(0.37) benign(0.049) TCGA-YC-A89H-01 1 10555370 10555370 G A PEX14 Missense_Mutation p.E26K 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-YC-A89H-01 1 109836859 109836859 C T MYBPHL 3'UTR 0.29 TCGA-YC-A89H-01 1 110163719 110163719 G A AMPD2 Silent p.R28R 0.37 TCGA-YC-A89H-01 1 110456916 110456916 C T CSF1 Silent p.L25L 0.42 TCGA-YC-A89H-01 1 110883036 110883036 G A RBM15 Missense_Mutation p.E337K 0.40 deleterious(0.03) benign(0.019) TCGA-YC-A89H-01 1 110883121 110883121 C T RBM15 Missense_Mutation p.S365L 0.18 tolerated(0.2) benign(0.023) TCGA-YC-A89H-01 1 11097837 11097837 A G MASP2 Silent p.P307P 0.36 TCGA-YC-A89H-01 1 11119371 11119371 C T SRM Missense_Mutation p.G67S 0.37 deleterious(0) probably_damaging(0.958) TCGA-YC-A89H-01 1 111777644 111777644 C T CHI3L2 Nonsense_Mutation p.Q149* 0.30 TCGA-YC-A89H-01 1 111825656 111825656 G A CHIAP2 RNA 0.36 TCGA-YC-A89H-01 1 111990172 111990172 C T WDR77 Missense_Mutation p.E110K 0.30 tolerated(0.15) benign(0.043) TCGA-YC-A89H-01 1 112247089 112247089 C T RAP1A Missense_Mutation p.S150L 0.39 tolerated(0.36) benign(0.018) TCGA-YC-A89H-01 1 112303122 112303122 G A DDX20 Missense_Mutation p.D198N 0.30 tolerated(0.26) possibly_damaging(0.536) TCGA-YC-A89H-01 1 11301693 11301693 G A MTOR Silent p.I486I 0.22 TCGA-YC-A89H-01 1 113242340 113242340 C T MOV10 Nonsense_Mutation p.R873* 0.30 TCGA-YC-A89H-01 1 113653109 113653109 G A LRIG2 Missense_Mutation p.E575K 0.20 deleterious(0.01) benign(0.27) TCGA-YC-A89H-01 1 115151414 115151414 C T DENND2C Missense_Mutation p.E484K 0.34 deleterious(0.02) benign(0.049) TCGA-YC-A89H-01 1 115261312 115261312 C T CSDE1 Silent p.L803L 0.31 TCGA-YC-A89H-01 1 116310948 116310948 A G CASQ2 Missense_Mutation p.L72P 0.29 deleterious(0) possibly_damaging(0.898) TCGA-YC-A89H-01 1 11740455 11740455 G A MAD2L2 Silent p.P38P 0.26 TCGA-YC-A89H-01 1 117556229 117556229 G A CD101 Missense_Mutation p.G348E 0.34 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 1 117699455 117699455 G A VTCN1 Silent p.I62I 0.27 TCGA-YC-A89H-01 1 117944959 117944959 G A MAN1A2 Missense_Mutation p.E152K 0.36 tolerated(0.54) benign(0.001) TCGA-YC-A89H-01 1 118065517 118065517 C T MAN1A2 Missense_Mutation p.H622Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 1 118497979 118497979 G A WDR3 Silent p.S817S 0.25 TCGA-YC-A89H-01 1 118565963 118565963 C T SPAG17 Missense_Mutation p.E1345K 0.28 tolerated(0.08) probably_damaging(0.987) TCGA-YC-A89H-01 1 119466110 119466110 G A TBX15 Silent p.F164F 0.41 TCGA-YC-A89H-01 1 120301896 120301896 C T HMGCS2 Missense_Mutation p.G232E 0.28 deleterious(0.03) probably_damaging(0.99) TCGA-YC-A89H-01 1 12446326 12446326 G A VPS13D Missense_Mutation p.G3856E 0.36 probably_damaging(0.999) TCGA-YC-A89H-01 1 12446330 12446330 C T VPS13D Silent p.I3857I 0.37 TCGA-YC-A89H-01 1 1267605 1267605 G A TAS1R3 Missense_Mutation p.A232T 0.33 tolerated(0.6) benign(0.024) TCGA-YC-A89H-01 1 12726497 12726497 C A AADACL4 Silent p.P325P 0.25 TCGA-YC-A89H-01 1 14075910 14075910 G A PRDM2 Missense_Mutation p.E147K 0.19 benign(0.416) TCGA-YC-A89H-01 1 144859936 144859936 C T PDE4DIP Missense_Mutation p.E2050K 0.15 deleterious(0.01) possibly_damaging(0.492) TCGA-YC-A89H-01 1 144868070 144868070 G A PDE4DIP Missense_Mutation p.P1790L 0.15 tolerated(0.63) benign(0.001) TCGA-YC-A89H-01 1 144930642 144930642 G A PDE4DIP Intron 0.29 TCGA-YC-A89H-01 1 145281667 145281667 G A NOTCH2NL Silent p.Q199Q 0.07 TCGA-YC-A89H-01 1 145438978 145438978 G A TXNIP Missense_Mutation p.G59E 0.37 deleterious(0.03) probably_damaging(0.981) TCGA-YC-A89H-01 1 145439792 145439792 C T TXNIP Missense_Mutation p.S113F 0.28 deleterious(0) probably_damaging(0.964) TCGA-YC-A89H-01 1 145584288 145584288 G A PIAS3 Missense_Mutation p.G480E 0.41 tolerated(0.61) benign(0.091) TCGA-YC-A89H-01 1 149857851 149857851 C T HIST2H2BE Missense_Mutation p.E114K 0.26 tolerated_low_confidence(0.07) benign(0.071) TCGA-YC-A89H-01 1 149915785 149915785 C T OTUD7B Missense_Mutation p.D835N 0.30 tolerated_low_confidence(0.25) benign(0) TCGA-YC-A89H-01 1 150960417 150960417 G A ANXA9 Missense_Mutation p.E228K 0.32 tolerated(0.69) benign(0.094) TCGA-YC-A89H-01 1 150970638 150970638 G A FAM63A Missense_Mutation p.H413Y 0.33 tolerated(0.1) probably_damaging(0.935) TCGA-YC-A89H-01 1 150974870 150974870 G A FAM63A Missense_Mutation p.S123L 0.39 tolerated_low_confidence(0.06) benign(0.013) TCGA-YC-A89H-01 1 151141494 151141494 G A SCNM1 Nonsense_Mutation p.W209* 0.43 TCGA-YC-A89H-01 1 151142546 151142546 G A TMOD4 3'UTR 0.24 TCGA-YC-A89H-01 1 151196878 151196878 C T PIP5K1A Missense_Mutation p.S51L 0.25 deleterious_low_confidence(0.01) benign(0.002) TCGA-YC-A89H-01 1 151826155 151826155 C T THEM5 5'UTR 0.27 TCGA-YC-A89H-01 1 152484328 152484328 G A LCE5A Silent p.G106G 0.11 TCGA-YC-A89H-01 1 153635738 153635738 C T ILF2 Silent p.V253V 0.28 TCGA-YC-A89H-01 1 153744864 153744864 C A INTS3 Silent p.I923I 0.23 TCGA-YC-A89H-01 1 153751905 153751905 G C SLC27A3 Missense_Mutation p.E658Q 0.29 tolerated(0.17) possibly_damaging(0.894) TCGA-YC-A89H-01 1 154218800 154218800 G A UBAP2L Silent p.Q321Q 0.17 TCGA-YC-A89H-01 1 154293640 154293640 C T AQP10 Silent p.F3F 0.31 TCGA-YC-A89H-01 1 154573684 154573684 C T ADAR Silent p.E478E 0.38 TCGA-YC-A89H-01 1 154988223 154988223 C T ZBTB7B Missense_Mutation p.R397C 0.36 deleterious(0) probably_damaging(0.983) TCGA-YC-A89H-01 1 155144939 155144939 C T RP11-201K10.3 Intron 0.27 TCGA-YC-A89H-01 1 155292103 155292103 C T RUSC1 Missense_Mutation p.S180L 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YC-A89H-01 1 155319153 155319153 C T ASH1L Missense_Mutation p.D2507N 0.23 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-YC-A89H-01 1 155449784 155449784 C T ASH1L Missense_Mutation p.M959I 0.23 tolerated_low_confidence(0.16) benign(0.01) TCGA-YC-A89H-01 1 155531872 155531872 C T ASH1L Intron 0.30 TCGA-YC-A89H-01 1 155838393 155838393 C T SYT11 Silent p.D224D 0.45 TCGA-YC-A89H-01 1 156145410 156145410 G A SEMA4A Missense_Mutation p.M552I 0.19 tolerated(0.5) benign(0.001) TCGA-YC-A89H-01 1 156180174 156180174 C T SLC25A44 Silent p.L299L 0.21 TCGA-YC-A89H-01 1 1565018 1565018 G C MIB2 Splice_Site p.X970_splice 0.45 TCGA-YC-A89H-01 1 156565418 156565418 C T GPATCH4 Missense_Mutation p.E239K 0.31 tolerated(0.09) benign(0.021) TCGA-YC-A89H-01 1 156697478 156697478 G A ISG20L2 5'UTR 0.19 TCGA-YC-A89H-01 1 15789914 15789914 C T CELA2A Silent p.P130P 0.22 TCGA-YC-A89H-01 1 158590187 158590187 C G SPTA1 Missense_Mutation p.E2064Q 0.34 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 160121801 160121801 G A ATP1A4 5'UTR 0.50 TCGA-YC-A89H-01 1 160137151 160137151 G A ATP1A4 Silent p.E480E 0.27 TCGA-YC-A89H-01 1 16057123 16057123 G A PLEKHM2 Missense_Mutation p.E769K 0.46 tolerated(0.2) probably_damaging(0.967) TCGA-YC-A89H-01 1 160970527 160970527 G A F11R Silent p.I94I 0.37 TCGA-YC-A89H-01 1 161131002 161131002 C T USP21 Missense_Mutation p.S191F 0.38 deleterious_low_confidence(0.01) benign(0.025) TCGA-YC-A89H-01 1 161200815 161200815 A G NR1I3 Intron 0.32 TCGA-YC-A89H-01 1 16203124 16203124 T G SPEN Missense_Mutation p.S278A 0.34 probably_damaging(0.977) TCGA-YC-A89H-01 1 162335183 162335183 C T NOS1AP Intron 0.29 TCGA-YC-A89H-01 1 162335254 162335254 C T RP11-565P22.6 Missense_Mutation p.R20C 0.35 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 16262210 16262210 G A SPEN Missense_Mutation p.E3159K 0.31 probably_damaging(0.975) TCGA-YC-A89H-01 1 163172674 163172674 C T RGS5 5'UTR 0.21 TCGA-YC-A89H-01 1 16462210 16462210 C T EPHA2 Nonsense_Mutation p.W456* 0.33 TCGA-YC-A89H-01 1 165737986 165737986 C T TMCO1 Missense_Mutation p.M52I 0.42 tolerated_low_confidence(0.06) benign(0.143) TCGA-YC-A89H-01 1 166810215 166810215 C T POGK Missense_Mutation p.L8F 0.40 tolerated_low_confidence(0.14) benign(0) TCGA-YC-A89H-01 1 169346071 169346071 G T BLZF1 Nonsense_Mutation p.E108* 0.23 TCGA-YC-A89H-01 1 169519916 169519916 G A F5 Missense_Mutation p.S453L 0.43 deleterious(0) possibly_damaging(0.642) TCGA-YC-A89H-01 1 169670777 169670777 G A SELL Silent p.F348F 0.54 TCGA-YC-A89H-01 1 17030466 17030466 G C ESPNP RNA 0.10 TCGA-YC-A89H-01 1 171751245 171751245 C T METTL13 Silent p.I46I 0.37 TCGA-YC-A89H-01 1 1720625 1720625 G A GNB1 Silent p.L261L 0.38 TCGA-YC-A89H-01 1 172410910 172410910 C T PIGC Missense_Mutation p.E285K 0.31 deleterious(0) possibly_damaging(0.871) TCGA-YC-A89H-01 1 173907783 173907783 G A RC3H1 3'UTR 0.33 TCGA-YC-A89H-01 1 17603011 17603011 C T PADI3 Intron 0.26 TCGA-YC-A89H-01 1 179095776 179095792 CTGGTTGTAACCAAGGA - ABL2 Frame_Shift_Del p.V136Efs*3 0.15 TCGA-YC-A89H-01 1 179520502 179520502 G A NPHS2 Nonsense_Mutation p.Q320* 0.23 TCGA-YC-A89H-01 1 180904982 180904982 G A KIAA1614 Missense_Mutation p.R646Q 0.39 tolerated(0.15) benign(0.061) TCGA-YC-A89H-01 1 180905311 180905311 G A KIAA1614 Missense_Mutation p.E756K 0.50 tolerated(0.07) benign(0.112) TCGA-YC-A89H-01 1 183100498 183100498 G A LAMC1 Missense_Mutation p.R1184Q 0.39 tolerated(0.13) probably_damaging(0.997) TCGA-YC-A89H-01 1 183273807 183273807 G A NMNAT2 Intron 0.29 TCGA-YC-A89H-01 1 183602256 183602256 C T ARPC5 Silent p.L62L 0.36 TCGA-YC-A89H-01 1 183857633 183857633 C T RGL1 Missense_Mutation p.S361F 0.36 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 184706797 184706797 G A EDEM3 Nonsense_Mutation p.R85* 0.37 TCGA-YC-A89H-01 1 186017949 186017949 A T HMCN1 Missense_Mutation p.K2185N 0.33 probably_damaging(0.993) TCGA-YC-A89H-01 1 18808064 18808064 C A KLHDC7A Missense_Mutation p.P197T 0.32 tolerated(0.15) benign(0.011) TCGA-YC-A89H-01 1 193074683 193074683 G A GLRX2 Missense_Mutation p.S29L 0.55 deleterious_low_confidence(0.04) benign(0.014) TCGA-YC-A89H-01 1 19439983 19439983 C T UBR4 Intron 0.27 TCGA-YC-A89H-01 1 200817788 200817788 G A CAMSAP2 Missense_Mutation p.D631N 0.18 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 201196238 201196238 C A IGFN1 Missense_Mutation p.T3672N 0.31 possibly_damaging(0.877) TCGA-YC-A89H-01 1 201196239 201196239 C T IGFN1 Silent p.T3672T 0.31 TCGA-YC-A89H-01 1 201196247 201196247 G A IGFN1 Missense_Mutation p.S3675N 0.33 probably_damaging(0.961) TCGA-YC-A89H-01 1 201749655 201749655 C T NAV1 Missense_Mutation p.P445S 0.38 deleterious(0.03) probably_damaging(0.967) TCGA-YC-A89H-01 1 201840403 201840403 G C IPO9 Missense_Mutation p.E842Q 0.31 tolerated(0.11) benign(0.411) TCGA-YC-A89H-01 1 201981084 201981084 G A ELF3 Splice_Site p.X55_splice 0.32 TCGA-YC-A89H-01 1 202977800 202977800 C T TMEM183A Nonsense_Mutation p.Q77* 0.25 TCGA-YC-A89H-01 1 204109244 204109244 G T ETNK2 Missense_Mutation p.H263N 0.36 tolerated(0.45) benign(0.297) TCGA-YC-A89H-01 1 204378919 204378919 C T PPP1R15B Missense_Mutation p.D541N 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-YC-A89H-01 1 204408105 204408105 G A PIK3C2B Silent p.D1158D 0.23 TCGA-YC-A89H-01 1 205555305 205555305 G A MFSD4 Missense_Mutation p.M373I 0.27 tolerated(0.25) benign(0.013) TCGA-YC-A89H-01 1 207110864 207110864 G A PIGR Silent p.I207I 0.45 TCGA-YC-A89H-01 1 207195431 207195431 A T C1orf116 Missense_Mutation p.S560T 0.52 deleterious(0.01) possibly_damaging(0.772) TCGA-YC-A89H-01 1 207195532 207195532 G A C1orf116 Missense_Mutation p.S526F 0.38 deleterious(0) possibly_damaging(0.859) TCGA-YC-A89H-01 1 207265034 207265034 C T C4BPB Missense_Mutation p.S93F 0.32 tolerated(0.71) benign(0.01) TCGA-YC-A89H-01 1 207925445 207925445 G A CD46 5'UTR 0.28 TCGA-YC-A89H-01 1 20940386 20940386 G A CDA Missense_Mutation p.M106I 0.31 tolerated(0.43) benign(0.042) TCGA-YC-A89H-01 1 210522276 210522276 G A HHAT Intron 0.42 TCGA-YC-A89H-01 1 211952371 211952371 C T LPGAT1 Missense_Mutation p.G248D 0.24 tolerated(0.28) probably_damaging(0.954) TCGA-YC-A89H-01 1 214805823 214805823 C T CENPF Missense_Mutation p.L442F 0.31 benign(0.01) TCGA-YC-A89H-01 1 22054995 22054995 T C USP48 Intron 0.43 TCGA-YC-A89H-01 1 220870151 220870151 C T C1orf115 3'UTR 0.47 TCGA-YC-A89H-01 1 223567447 223567447 G A C1orf65 Silent p.Q210Q 0.34 TCGA-YC-A89H-01 1 226925187 226925187 C T ITPKB 5'UTR 0.27 TCGA-YC-A89H-01 1 227171804 227171804 G A ADCK3 Silent p.L422L 0.28 TCGA-YC-A89H-01 1 227172624 227172624 C T ADCK3 Silent p.F518F 0.36 TCGA-YC-A89H-01 1 227504824 227504824 C T CDC42BPA Silent p.Q20Q 0.26 TCGA-YC-A89H-01 1 227922479 227922479 C T JMJD4 Missense_Mutation p.E147K 0.38 tolerated(0.13) possibly_damaging(0.566) TCGA-YC-A89H-01 1 228547547 228547547 C T OBSCN Intron 0.50 TCGA-YC-A89H-01 1 230379072 230379072 C T GALNT2 Missense_Mutation p.R210W 0.28 deleterious(0) probably_damaging(0.959) TCGA-YC-A89H-01 1 231473299 231473299 G A EXOC8 Nonsense_Mutation p.Q65* 0.20 TCGA-YC-A89H-01 1 231473522 231473522 C T EXOC8 5'UTR 0.41 TCGA-YC-A89H-01 1 232942456 232942456 C T MAP10 Missense_Mutation p.P563S 0.26 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 233388522 233388522 T A PCNXL2 Missense_Mutation p.Q616L 0.39 tolerated(0.3) benign(0) TCGA-YC-A89H-01 1 233397811 233397811 G A PCNXL2 Missense_Mutation p.H154Y 0.14 tolerated(0.05) benign(0.232) TCGA-YC-A89H-01 1 236557753 236557753 C T EDARADD Silent p.L3L 0.46 TCGA-YC-A89H-01 1 23696095 23696120 AGGCAGCTCAGAAACCACAGGCTCAT - C1orf213 Frame_Shift_Del p.A104Dfs*3 0.39 TCGA-YC-A89H-01 1 23696194 23696194 C T C1orf213 3'UTR 0.38 TCGA-YC-A89H-01 1 24019102 24019102 G A RPL11 Missense_Mutation p.D4N 0.40 deleterious(0.04) benign(0.063) TCGA-YC-A89H-01 1 2411637 2411637 G A PLCH2 Silent p.T150T 0.33 TCGA-YC-A89H-01 1 24180870 24180870 C T FUCA1 Missense_Mutation p.E317K 0.39 tolerated(0.08) benign(0.002) TCGA-YC-A89H-01 1 243292697 243292697 C G CEP170 Missense_Mutation p.E1460Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 1 243363979 243363979 C T CEP170 Missense_Mutation p.E113K 0.38 deleterious(0) probably_damaging(0.919) TCGA-YC-A89H-01 1 243589772 243589772 G A SDCCAG8 Missense_Mutation p.D633N 0.31 tolerated(0.23) benign(0.009) TCGA-YC-A89H-01 1 24411023 24411023 G C MYOM3 Missense_Mutation p.I635M 0.32 deleterious(0) possibly_damaging(0.857) TCGA-YC-A89H-01 1 245027271 245027271 C T HNRNPU Silent p.A113A 0.21 TCGA-YC-A89H-01 1 2452623 2452623 G A PANK4 Silent p.V113V 0.41 TCGA-YC-A89H-01 1 246899316 246899316 G A SCCPDH Missense_Mutation p.E115K 0.32 deleterious(0.03) possibly_damaging(0.465) TCGA-YC-A89H-01 1 246899355 246899355 C T SCCPDH Nonsense_Mutation p.Q128* 0.36 TCGA-YC-A89H-01 1 247048857 247048857 C T AHCTF1 Missense_Mutation p.M875I 0.31 deleterious(0.01) possibly_damaging(0.692) TCGA-YC-A89H-01 1 248551095 248551095 C T OR2T6 Silent p.L62L 0.32 TCGA-YC-A89H-01 1 25780779 25780779 C T TMEM57 Missense_Mutation p.L127F 0.36 deleterious(0) probably_damaging(0.995) TCGA-YC-A89H-01 1 25810722 25810722 G A TMEM57 Missense_Mutation p.E424K 0.28 tolerated(0.06) probably_damaging(0.997) TCGA-YC-A89H-01 1 25889141 25889141 G A LDLRAP1 Missense_Mutation p.A156T 0.37 tolerated(0.06) benign(0.297) TCGA-YC-A89H-01 1 26190052 26190052 C T PAQR7 Silent p.V93V 0.17 TCGA-YC-A89H-01 1 26366346 26366346 C T SLC30A2 Missense_Mutation p.G299R 0.17 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 27059213 27059213 C G ARID1A Nonsense_Mutation p.S617* 0.17 TCGA-YC-A89H-01 1 27092946 27092946 A G ARID1A Splice_Site p.X960_splice 0.38 TCGA-YC-A89H-01 1 27744911 27744911 C T WASF2 Missense_Mutation p.G93E 0.23 deleterious(0.02) unknown(0) TCGA-YC-A89H-01 1 2938393 2938393 C T ACTRT2 Missense_Mutation p.S48L 0.31 tolerated(0.26) benign(0.006) TCGA-YC-A89H-01 1 2939033 2939033 G T ACTRT2 Missense_Mutation p.E261D 0.33 deleterious(0) probably_damaging(0.99) TCGA-YC-A89H-01 1 29529742 29529743 - C MECR Frame_Shift_Ins p.D185Gfs*36 0.36 TCGA-YC-A89H-01 1 31454171 31454171 G A PUM1 Nonsense_Mutation p.Q414* 0.26 TCGA-YC-A89H-01 1 31821806 31821806 T C ZCCHC17 Silent p.S183S 0.34 TCGA-YC-A89H-01 1 32568299 32568299 C T TMEM39B 3'UTR 0.19 TCGA-YC-A89H-01 1 32674721 32674721 G A DCDC2B Silent p.K9K 0.31 TCGA-YC-A89H-01 1 33134379 33134379 G A RBBP4 Missense_Mutation p.G175E 0.38 deleterious(0) probably_damaging(0.976) TCGA-YC-A89H-01 1 33236931 33236931 G T KIAA1522 Silent p.L717L 0.26 TCGA-YC-A89H-01 1 33237295 33237295 C T KIAA1522 Missense_Mutation p.P839S 0.27 tolerated(0.05) probably_damaging(0.983) TCGA-YC-A89H-01 1 33944828 33944828 G A ZSCAN20 5'UTR 0.06 TCGA-YC-A89H-01 1 33959931 33959931 T A ZSCAN20 Missense_Mutation p.W663R 0.30 tolerated(0.25) possibly_damaging(0.58) TCGA-YC-A89H-01 1 34180246 34180246 C T CSMD2 Missense_Mutation p.R1076H 0.30 deleterious(0.02) benign(0.035) TCGA-YC-A89H-01 1 3421823 3421823 C T MEGF6 Missense_Mutation p.E713K 0.29 tolerated(0.22) benign(0.019) TCGA-YC-A89H-01 1 35496358 35496358 C T ZMYM6 Intron 0.45 TCGA-YC-A89H-01 1 35563089 35563089 C T ZMYM1 Missense_Mutation p.S114F 0.24 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-YC-A89H-01 1 35656103 35656103 G A SFPQ Nonsense_Mutation p.Q471* 0.29 TCGA-YC-A89H-01 1 35835996 35835996 C T ZMYM4 Nonsense_Mutation p.Q317* 0.44 TCGA-YC-A89H-01 1 36181746 36181746 C T C1orf216 Silent p.R59R 0.38 TCGA-YC-A89H-01 1 36474317 36474317 G A AGO3 Missense_Mutation p.G274R 0.27 tolerated(0.06) possibly_damaging(0.78) TCGA-YC-A89H-01 1 36557630 36557630 C T ADPRHL2 Silent p.L212L 0.32 TCGA-YC-A89H-01 1 36565761 36565761 G A COL8A2 Missense_Mutation p.S28F 0.27 tolerated_low_confidence(0.63) unknown(0) TCGA-YC-A89H-01 1 36645528 36645528 C T MAP7D1 Missense_Mutation p.P792L 0.32 unknown(0) TCGA-YC-A89H-01 1 36752133 36752133 G A THRAP3 Missense_Mutation p.R101Q 0.34 tolerated(0.07) unknown(0) TCGA-YC-A89H-01 1 37941218 37941218 G A ZC3H12A Missense_Mutation p.E41K 0.38 tolerated(0.65) benign(0.002) TCGA-YC-A89H-01 1 38158356 38158356 G A CDCA8 5'UTR 0.26 TCGA-YC-A89H-01 1 38281192 38281192 G A MTF1 Silent p.I626I 0.20 TCGA-YC-A89H-01 1 38304388 38304388 T A MTF1 Missense_Mutation p.N230Y 0.27 deleterious(0) probably_damaging(0.979) TCGA-YC-A89H-01 1 38464927 38464927 A G FHL3 Splice_Site p.X52_splice 0.33 TCGA-YC-A89H-01 1 39338978 39338978 A G MYCBP 5'UTR 0.31 TCGA-YC-A89H-01 1 39776059 39776059 G T MACF1 Missense_Mutation p.C1025F 0.27 possibly_damaging(0.739) TCGA-YC-A89H-01 1 39783018 39783018 C T MACF1 Nonsense_Mutation p.Q1246* 0.27 TCGA-YC-A89H-01 1 39783033 39783033 C T MACF1 Nonsense_Mutation p.Q1251* 0.26 TCGA-YC-A89H-01 1 39950348 39950348 G A MACF1 Missense_Mutation p.D5328N 0.39 benign(0.283) TCGA-YC-A89H-01 1 40041621 40041621 C T PABPC4 Translation_Start_Site p.M1? 0.38 deleterious(0) probably_damaging(0.913) TCGA-YC-A89H-01 1 40349141 40349141 C T TRIT1 Missense_Mutation p.R8Q 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.859) TCGA-YC-A89H-01 1 40363307 40363307 C T MYCL Missense_Mutation p.E308K 0.33 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 1 40531920 40531920 T A CAP1 Nonsense_Mutation p.Y186* 0.16 TCGA-YC-A89H-01 1 42905688 42905688 G C ZMYND12 Missense_Mutation p.R145G 0.06 tolerated(0.07) benign(0.131) TCGA-YC-A89H-01 1 43022002 43022002 G A CCDC30 Missense_Mutation p.E201K 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-YC-A89H-01 1 43637196 43637196 G A EBNA1BP2 Nonsense_Mutation p.Q148* 0.32 TCGA-YC-A89H-01 1 43637263 43637263 G A EBNA1BP2 Silent p.L125L 0.26 TCGA-YC-A89H-01 1 44083568 44083568 G A PTPRF Missense_Mutation p.E1453K 0.39 deleterious(0.01) benign(0.318) TCGA-YC-A89H-01 1 45484540 45484540 G A ZSWIM5 Silent p.L1048L 0.26 TCGA-YC-A89H-01 1 46049858 46049858 G A NASP Missense_Mutation p.E14K 0.30 deleterious_low_confidence(0) unknown(0) TCGA-YC-A89H-01 1 46085918 46085918 C T CCDC17 3'UTR 0.33 TCGA-YC-A89H-01 1 46099970 46099970 A G GPBP1L1 Intron 0.33 TCGA-YC-A89H-01 1 46976878 46976878 C T DMBX1 Missense_Mutation p.A202V 0.32 tolerated(0.47) benign(0.001) TCGA-YC-A89H-01 1 47609551 47609551 G A CYP4A22 Nonsense_Mutation p.W251* 0.34 TCGA-YC-A89H-01 1 51753927 51753927 C G TTC39A Missense_Mutation p.E550Q 0.29 deleterious(0.03) probably_damaging(0.995) TCGA-YC-A89H-01 1 51829656 51829656 G A EPS15 Silent p.V747V 0.36 TCGA-YC-A89H-01 1 52703261 52703261 G A ZFYVE9 Missense_Mutation p.E58K 0.36 tolerated_low_confidence(0.13) benign(0.011) TCGA-YC-A89H-01 1 52840487 52840487 G A ORC1 Nonsense_Mutation p.Q796* 0.31 TCGA-YC-A89H-01 1 53287251 53287251 C T ZYG11B Missense_Mutation p.H729Y 0.33 tolerated(1) benign(0.001) TCGA-YC-A89H-01 1 53513597 53513597 G A SCP2 Missense_Mutation p.M512I 0.27 tolerated(0.09) probably_damaging(0.979) TCGA-YC-A89H-01 1 53537269 53537269 G A PODN Silent p.L173L 0.29 TCGA-YC-A89H-01 1 55050492 55050492 C T ACOT11 Silent p.V66V 0.46 TCGA-YC-A89H-01 1 55050504 55050504 C T ACOT11 Silent p.L70L 0.42 TCGA-YC-A89H-01 1 55199315 55199315 C T TTC4 Silent p.L304L 0.27 TCGA-YC-A89H-01 1 57169881 57169881 C T PRKAA2 Silent p.L342L 0.32 TCGA-YC-A89H-01 1 6169997 6169997 C T CHD5 Silent p.L1812L 0.22 TCGA-YC-A89H-01 1 6202250 6202250 C G CHD5 Missense_Mutation p.E792Q 0.32 tolerated(0.06) probably_damaging(0.955) TCGA-YC-A89H-01 1 62910776 62910776 G A USP1 Missense_Mutation p.D309N 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-YC-A89H-01 1 62960099 62960099 C T DOCK7 Silent p.L1657L 0.20 TCGA-YC-A89H-01 1 63307207 63307207 G A ATG4C Missense_Mutation p.E400K 0.28 tolerated(0.06) possibly_damaging(0.868) TCGA-YC-A89H-01 1 64059227 64059227 G A PGM1 Missense_Mutation p.R23Q 0.24 deleterious(0) benign(0.016) TCGA-YC-A89H-01 1 65304224 65304224 A C JAK1 Missense_Mutation p.L964R 0.35 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 1 65344790 65344790 C A JAK1 Nonsense_Mutation p.E83* 0.27 TCGA-YC-A89H-01 1 6648231 6648231 C T ZBTB48 Silent p.L497L 0.27 TCGA-YC-A89H-01 1 6694650 6694650 C T DNAJC11 3'UTR 0.33 TCGA-YC-A89H-01 1 67199513 67199513 G A SGIP1 Missense_Mutation p.E661K 0.26 deleterious(0) probably_damaging(0.952) TCGA-YC-A89H-01 1 70687416 70687416 G A SRSF11 Missense_Mutation p.E33K 0.24 tolerated(1) unknown(0) TCGA-YC-A89H-01 1 71873171 71873171 A G NEGR1 Silent p.S341S 0.38 TCGA-YC-A89H-01 1 75198940 75198940 C T TYW3 Silent p.S4S 0.29 TCGA-YC-A89H-01 1 7895964 7895964 G A PER3 Silent p.Q1110Q 0.26 TCGA-YC-A89H-01 1 8418464 8418464 C T RERE Silent p.E1377E 0.42 TCGA-YC-A89H-01 1 8418803 8418803 G A RERE Silent p.V1264V 0.28 TCGA-YC-A89H-01 1 8557493 8557493 C T RERE Missense_Mutation p.D326N 0.32 probably_damaging(0.991) TCGA-YC-A89H-01 1 86047927 86047927 G A CYR61 Silent p.L198L 0.33 TCGA-YC-A89H-01 1 86048116 86048116 C T CYR61 Missense_Mutation p.R218C 0.20 deleterious(0.05) benign(0.28) TCGA-YC-A89H-01 1 86173640 86173640 C T ZNHIT6 Missense_Mutation p.E110K 0.38 deleterious_low_confidence(0.04) benign(0.129) TCGA-YC-A89H-01 1 87033251 87033251 G A CLCA4 Missense_Mutation p.E367K 0.26 tolerated(0.39) possibly_damaging(0.457) TCGA-YC-A89H-01 1 9034830 9034830 G C CA6 3'Flank 0.35 TCGA-YC-A89H-01 1 92811414 92811414 G A RPAP2 Missense_Mutation p.R544K 0.26 tolerated(0.44) possibly_damaging(0.452) TCGA-YC-A89H-01 1 93812256 93812256 C T DR1 Silent p.I18I 0.32 TCGA-YC-A89H-01 1 94033409 94033409 C T BCAR3 Splice_Site p.X659_splice 0.28 TCGA-YC-A89H-01 1 949852 949852 G A ISG15 Silent p.R164R 0.33 TCGA-YC-A89H-01 1 95615785 95615785 C T TMEM56 Silent p.N89N 0.21 TCGA-YC-A89H-01 1 97658765 97658765 C T DPYD Missense_Mutation p.E828K 0.18 tolerated(0.17) benign(0.011) TCGA-YC-A89H-01 20 10388273 10388273 G A MKKS Silent p.I421I 0.24 TCGA-YC-A89H-01 20 10622450 10622450 C T JAG1 Missense_Mutation p.G888E 0.28 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 20 10639300 10639300 C T JAG1 Silent p.L170L 0.26 TCGA-YC-A89H-01 20 10653511 10653511 G A JAG1 Silent p.F75F 0.55 TCGA-YC-A89H-01 20 13747451 13747451 C T ESF1 Missense_Mutation p.E547K 0.19 deleterious(0) probably_damaging(0.985) TCGA-YC-A89H-01 20 13797567 13797567 C T NDUFAF5 Silent p.I303I 0.19 TCGA-YC-A89H-01 20 1435649 1435649 C T NSFL1C Missense_Mutation p.R138Q 0.25 tolerated(0.07) benign(0.003) TCGA-YC-A89H-01 20 17943544 17943544 C T SNX5 Intron 0.49 TCGA-YC-A89H-01 20 210320 210320 G A DEFB129 Missense_Mutation p.D154N 0.33 tolerated(0.34) benign(0.014) TCGA-YC-A89H-01 20 23028975 23028975 G A THBD Silent p.V389V 0.51 TCGA-YC-A89H-01 20 2464071 2464071 C T ZNF343 Silent p.Q512Q 0.46 TCGA-YC-A89H-01 20 25290212 25290212 C T ABHD12 Splice_Site p.X207_splice 0.47 TCGA-YC-A89H-01 20 30433194 30433194 C T FOXS1 Missense_Mutation p.R51Q 0.53 deleterious(0.01) probably_damaging(0.994) TCGA-YC-A89H-01 20 31385062 31385062 G A DNMT3B Missense_Mutation p.E483K 0.52 tolerated(0.2) probably_damaging(0.984) TCGA-YC-A89H-01 20 32210943 32210943 G A CBFA2T2 Missense_Mutation p.R187Q 0.54 deleterious(0) probably_damaging(0.955) TCGA-YC-A89H-01 20 32210945 32210945 G A CBFA2T2 Missense_Mutation p.E188K 0.57 deleterious(0) probably_damaging(0.94) TCGA-YC-A89H-01 20 33222432 33222432 C T PIGU Silent p.L172L 0.57 TCGA-YC-A89H-01 20 33874979 33874979 G A FAM83C Missense_Mutation p.R535W 0.55 tolerated_low_confidence(0.18) benign(0) TCGA-YC-A89H-01 20 34025706 34025706 C T GDF5 Translation_Start_Site p.M1? 0.62 deleterious_low_confidence(0) benign(0.107) TCGA-YC-A89H-01 20 3564650 3564650 A G ATRN Missense_Mutation p.Q957R 0.23 tolerated(1) benign(0.01) TCGA-YC-A89H-01 20 35858406 35858406 G A RPN2 Missense_Mutation p.E509K 0.58 tolerated(0.16) benign(0.278) TCGA-YC-A89H-01 20 3674187 3674187 C T SIGLEC1 Missense_Mutation p.V1139I 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-YC-A89H-01 20 3758946 3758946 C G SPEF1 Missense_Mutation p.R208S 0.38 tolerated(0.06) benign(0.23) TCGA-YC-A89H-01 20 39794432 39794432 G A PLCG1 Missense_Mutation p.E589K 0.68 deleterious(0.04) probably_damaging(1) TCGA-YC-A89H-01 20 420971 420971 G A TBC1D20 Missense_Mutation p.S230F 0.56 deleterious(0.01) benign(0.367) TCGA-YC-A89H-01 20 42208668 42208668 C G SGK2 Missense_Mutation p.H362Q 0.60 tolerated(1) benign(0.01) TCGA-YC-A89H-01 20 45850111 45850111 G A ZMYND8 Nonsense_Mutation p.Q1045* 0.67 TCGA-YC-A89H-01 20 47887048 47887048 G A ZNFX1 Missense_Mutation p.T434I 0.65 tolerated(0.44) benign(0.022) TCGA-YC-A89H-01 20 480537 480540 CAAA - CSNK2A1 Frame_Shift_Del p.I84Mfs*4 0.42 TCGA-YC-A89H-01 20 4850477 4850477 C T SLC23A2 Intron 0.58 TCGA-YC-A89H-01 20 485835 485835 C T CSNK2A1 Missense_Mutation p.R47Q 0.38 deleterious(0.01) possibly_damaging(0.87) TCGA-YC-A89H-01 20 5081551 5081551 C T TMEM230 Silent p.L146L 0.51 TCGA-YC-A89H-01 20 52601874 52601874 C T BCAS1 Silent p.E364E 0.24 TCGA-YC-A89H-01 20 55027135 55027135 G A CASS4 Silent p.Q301Q 0.53 TCGA-YC-A89H-01 20 56227183 56227183 T C PMEPA1 Missense_Mutation p.T264A 0.36 tolerated_low_confidence(1) benign(0) TCGA-YC-A89H-01 20 58559791 58559791 G A CDH26 Silent p.L213L 0.21 TCGA-YC-A89H-01 20 60879624 60879624 C T ADRM1 Silent p.F107F 0.14 TCGA-YC-A89H-01 20 62421594 62421594 G A ZBTB46 Missense_Mutation p.R173W 0.56 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 20 644764 644764 C T SCRT2 Missense_Mutation p.E159K 0.31 deleterious(0) possibly_damaging(0.752) TCGA-YC-A89H-01 20 8637830 8637830 G A PLCB1 Splice_Site p.X199_splice 0.33 TCGA-YC-A89H-01 21 16338404 16338404 C T NRIP1 Missense_Mutation p.E704K 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-YC-A89H-01 21 16340517 16340517 C T NRIP1 5'UTR 0.46 TCGA-YC-A89H-01 21 17198628 17198628 C T USP25 Silent p.D470D 0.22 TCGA-YC-A89H-01 21 30304842 30304842 G A LTN1 Nonsense_Mutation p.Q1720* 0.34 TCGA-YC-A89H-01 21 30343595 30343595 C G LTN1 Missense_Mutation p.E374Q 0.31 tolerated(0.11) possibly_damaging(0.684) TCGA-YC-A89H-01 21 33036168 33036168 C T SOD1 Silent p.F46F 0.22 TCGA-YC-A89H-01 21 34133421 34133421 C G PAXBP1 Missense_Mutation p.E308D 0.29 deleterious(0.01) possibly_damaging(0.493) TCGA-YC-A89H-01 21 34442940 34442940 G A OLIG1 Missense_Mutation p.E130K 0.23 deleterious(0) probably_damaging(0.989) TCGA-YC-A89H-01 21 34915413 34915413 C T SON Silent p.I5I 0.26 TCGA-YC-A89H-01 21 34922414 34922414 G A SON Missense_Mutation p.E293K 0.28 benign(0.292) TCGA-YC-A89H-01 21 34926598 34926598 G A SON Silent p.E1687E 0.27 TCGA-YC-A89H-01 21 34931547 34931547 G A SON Silent p.Q2111Q 0.36 TCGA-YC-A89H-01 21 38390258 38390258 G A RIPPLY3 Silent p.T108T 0.26 TCGA-YC-A89H-01 21 38390506 38390506 G A RIPPLY3 Silent p.%3D 0.29 TCGA-YC-A89H-01 21 38639669 38639669 C T DSCR3 5'UTR 0.47 TCGA-YC-A89H-01 21 39671521 39671521 C T KCNJ15 Missense_Mutation p.S113F 0.31 deleterious(0.01) possibly_damaging(0.883) TCGA-YC-A89H-01 21 40670409 40670409 C T BRWD1 Missense_Mutation p.V100I 0.25 deleterious(0.05) possibly_damaging(0.891) TCGA-YC-A89H-01 21 40720491 40720491 C T HMGN1 Missense_Mutation p.E10K 0.39 tolerated(0.19) benign(0.003) TCGA-YC-A89H-01 21 41032853 41032853 G A B3GALT5 Missense_Mutation p.D123N 0.21 tolerated(0.35) benign(0.246) TCGA-YC-A89H-01 21 42830705 42830705 G A MX1 3'UTR 0.32 TCGA-YC-A89H-01 21 45540653 45540653 C T PWP2 Silent p.L493L 0.43 TCGA-YC-A89H-01 21 47865418 47865418 G A PCNT 3'UTR 0.50 TCGA-YC-A89H-01 22 17073041 17073041 C T CCT8L2 Missense_Mutation p.E134K 0.41 deleterious(0.04) possibly_damaging(0.666) TCGA-YC-A89H-01 22 19423221 19423221 G T MRPL40 Missense_Mutation p.K119N 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-YC-A89H-01 22 19747156 19747156 C T TBX1 5'UTR 0.33 TCGA-YC-A89H-01 22 23610681 23610681 T G BCR Silent p.A613A 0.29 TCGA-YC-A89H-01 22 24807655 24807655 C T SPECC1L Silent p.L1063L 0.21 TCGA-YC-A89H-01 22 24829567 24829567 C T ADORA2A Silent p.T65T 0.37 TCGA-YC-A89H-01 22 24942948 24942948 G A GUCD1 Missense_Mutation p.T107I 0.30 deleterious(0.02) benign(0.295) TCGA-YC-A89H-01 22 26906161 26906161 G A TFIP11 Silent p.I26I 0.26 TCGA-YC-A89H-01 22 26997851 26997851 G T CRYBB1 Silent p.S189S 0.30 TCGA-YC-A89H-01 22 29130435 29130435 G A CHEK2 Missense_Mutation p.P92L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-YC-A89H-01 22 29191699 29191699 G A XBP1 Silent p.F207F 0.30 TCGA-YC-A89H-01 22 29195116 29195116 G A XBP1 Nonsense_Mutation p.Q85* 0.26 TCGA-YC-A89H-01 22 29445802 29445802 G A ZNRF3 Missense_Mutation p.D545N 0.32 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 22 29932710 29932710 C T THOC5 Missense_Mutation p.R206Q 0.20 tolerated(0.07) benign(0.001) TCGA-YC-A89H-01 22 30124721 30124721 T C CABP7 Missense_Mutation p.V119A 0.20 tolerated(0.25) benign(0.013) TCGA-YC-A89H-01 22 30416562 30416562 C T MTMR3 Missense_Mutation p.R972C 0.31 tolerated_low_confidence(0.08) benign(0.002) TCGA-YC-A89H-01 22 31674532 31674532 G A LIMK2 3'Flank 0.45 TCGA-YC-A89H-01 22 31851939 31851939 G C EIF4ENIF1 Missense_Mutation p.S333C 0.37 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 22 31998226 31998226 C T SFI1 Missense_Mutation p.L525F 0.38 deleterious(0.03) benign(0.007) TCGA-YC-A89H-01 22 36600735 36600735 C T APOL4 5'UTR 0.36 TCGA-YC-A89H-01 22 36623662 36623662 T G APOL2 Missense_Mutation p.M268L 0.37 tolerated(0.16) benign(0.003) TCGA-YC-A89H-01 22 36745252 36745252 G A MYH9 Silent p.L10L 0.31 TCGA-YC-A89H-01 22 38474442 38474442 C T SLC16A8 Missense_Mutation p.E490K 0.30 tolerated(0.17) benign(0.012) TCGA-YC-A89H-01 22 38882361 38882361 C T DDX17 Missense_Mutation p.G592E 0.24 deleterious_low_confidence(0.01) benign(0.327) TCGA-YC-A89H-01 22 40669555 40669555 C T TNRC6B Missense_Mutation p.S1031F 0.33 deleterious(0) probably_damaging(0.912) TCGA-YC-A89H-01 22 41488902 41488902 C T EP300 5'UTR 0.37 TCGA-YC-A89H-01 22 41548264 41548264 G T EP300 Nonsense_Mutation p.E1018* 0.27 TCGA-YC-A89H-01 22 41924411 41924411 C T POLR3H 3'UTR 0.29 TCGA-YC-A89H-01 22 42271620 42271620 G A SREBF2 Silent p.Q426Q 0.31 TCGA-YC-A89H-01 22 42373052 42373052 G A SEPT3 5'UTR 0.23 TCGA-YC-A89H-01 22 42610246 42610246 A G TCF20 Missense_Mutation p.S356P 0.22 probably_damaging(0.998) TCGA-YC-A89H-01 22 43455390 43455390 C T TTLL1 Silent p.A297A 0.24 TCGA-YC-A89H-01 22 43604220 43604220 C T SCUBE1 Silent p.T864T 0.06 TCGA-YC-A89H-01 22 43972347 43972347 C T EFCAB6 Missense_Mutation p.E1084K 0.36 deleterious(0) probably_damaging(0.977) TCGA-YC-A89H-01 22 45683121 45683121 G A UPK3A Missense_Mutation p.E93K 0.35 tolerated(0.69) benign(0.079) TCGA-YC-A89H-01 22 46372566 46372566 G A WNT7B Silent p.L23L 0.30 TCGA-YC-A89H-01 22 47068777 47068777 C T GRAMD4 Silent p.F374F 0.29 TCGA-YC-A89H-01 22 47069688 47069688 C T GRAMD4 Missense_Mutation p.T454I 0.24 deleterious(0.02) benign(0.142) TCGA-YC-A89H-01 22 47193435 47193435 C T TBC1D22A Silent p.L185L 0.21 TCGA-YC-A89H-01 22 50216606 50216606 G A BRD1 Missense_Mutation p.P454S 0.33 tolerated(0.7) benign(0.041) TCGA-YC-A89H-01 22 50316032 50316032 G A CRELD2 Missense_Mutation p.R227Q 0.22 tolerated_low_confidence(0.23) benign(0.012) TCGA-YC-A89H-01 22 50316033 50316033 G A CRELD2 Silent p.R227R 0.22 TCGA-YC-A89H-01 22 50356473 50356473 C G PIM3 Missense_Mutation p.I251M 0.38 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 22 50662684 50662684 C T TUBGCP6 Missense_Mutation p.R719Q 0.35 tolerated(0.06) possibly_damaging(0.715) TCGA-YC-A89H-01 22 50682500 50682500 C T TUBGCP6 Missense_Mutation p.R130Q 0.41 deleterious(0.01) possibly_damaging(0.791) TCGA-YC-A89H-01 22 50720409 50720409 G A PLXNB2 Silent p.I1073I 0.35 TCGA-YC-A89H-01 22 50727256 50727257 - ATAGAGT PLXNB2 Frame_Shift_Ins p.V434Yfs*168 0.33 TCGA-YC-A89H-01 22 50927873 50927873 G A MIOX Missense_Mutation p.E212K 0.62 tolerated(0.06) benign(0.266) TCGA-YC-A89H-01 22 50943028 50943028 G A LMF2 Silent p.F522F 0.42 TCGA-YC-A89H-01 22 51043377 51043377 C T MAPK8IP2 Silent p.G549G 0.38 TCGA-YC-A89H-01 22 51048351 51048351 G A MAPK8IP2 Intron 0.46 TCGA-YC-A89H-01 2 106761725 106761725 C T UXS1 Silent p.K131K 0.33 TCGA-YC-A89H-01 2 109421375 109421375 G A CCDC138 Missense_Mutation p.E256K 0.25 deleterious(0) possibly_damaging(0.502) TCGA-YC-A89H-01 2 110322039 110322039 C T SEPT10 Missense_Mutation p.R311Q 0.36 deleterious(0.01) possibly_damaging(0.477) TCGA-YC-A89H-01 2 110323400 110323400 C T SEPT10 Missense_Mutation p.E267K 0.36 tolerated(0.09) probably_damaging(0.998) TCGA-YC-A89H-01 2 112582553 112582553 C T ANAPC1 Missense_Mutation p.M934I 0.27 tolerated(0.07) benign(0.014) TCGA-YC-A89H-01 2 112760672 112760672 A T MERTK Missense_Mutation p.H565L 0.25 tolerated(0.13) benign(0.007) TCGA-YC-A89H-01 2 113258785 113258785 G A TTL Missense_Mutation p.E158K 0.31 tolerated(0.15) probably_damaging(0.931) TCGA-YC-A89H-01 2 113330286 113330286 C T POLR1B Missense_Mutation p.A741V 0.26 deleterious(0.01) possibly_damaging(0.901) TCGA-YC-A89H-01 2 113418013 113418013 G A SLC20A1 Missense_Mutation p.D553N 0.20 tolerated(0.26) benign(0.005) TCGA-YC-A89H-01 2 113500334 113500334 A G CKAP2L Silent p.L591L 0.32 TCGA-YC-A89H-01 2 119600673 119600673 G A EN1 Silent p.L340L 0.36 TCGA-YC-A89H-01 2 120020691 120020691 G A STEAP3 Nonsense_Mutation p.W425* 0.06 TCGA-YC-A89H-01 2 120219499 120219499 G A SCTR Silent p.L238L 0.31 TCGA-YC-A89H-01 2 127953045 127953045 G A CYP27C1 Silent p.L195L 0.29 TCGA-YC-A89H-01 2 128463995 128463995 G A WDR33 Nonsense_Mutation p.R1305* 0.42 TCGA-YC-A89H-01 2 130949679 130949679 G A TUBA3E Missense_Mutation p.P360S 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-YC-A89H-01 2 131487651 131487651 G A GPR148 Missense_Mutation p.M309I 0.36 deleterious(0.02) possibly_damaging(0.681) TCGA-YC-A89H-01 2 136499499 136499499 G A UBXN4 5'UTR 0.38 TCGA-YC-A89H-01 2 145156271 145156271 T C ZEB2 Missense_Mutation p.K828R 0.27 tolerated(0.43) possibly_damaging(0.679) TCGA-YC-A89H-01 2 154335052 154335052 C T RPRM Missense_Mutation p.D10N 0.42 tolerated_low_confidence(0.48) benign(0.001) TCGA-YC-A89H-01 2 155098615 155098615 G A GALNT13 Nonsense_Mutation p.W128* 0.35 TCGA-YC-A89H-01 2 155555257 155555257 C T KCNJ3 5'UTR 0.46 TCGA-YC-A89H-01 2 15701416 15701416 C T NBAS Missense_Mutation p.E5K 0.32 deleterious_low_confidence(0.02) benign(0.107) TCGA-YC-A89H-01 2 158114519 158114519 G T GALNT5 5'UTR 0.41 TCGA-YC-A89H-01 2 158115430 158115430 C T GALNT5 Missense_Mutation p.P279L 0.23 tolerated(0.16) benign(0) TCGA-YC-A89H-01 2 160869829 160869829 C T PLA2R1 Missense_Mutation p.D537N 0.39 deleterious(0.03) benign(0.199) TCGA-YC-A89H-01 2 160889499 160889499 G A PLA2R1 Missense_Mutation p.T271I 0.30 deleterious(0.04) benign(0.049) TCGA-YC-A89H-01 2 165551127 165551127 A C COBLL1 Silent p.S963S 0.34 TCGA-YC-A89H-01 2 168067354 168067354 G A XIRP2 Silent p.A224A 0.20 TCGA-YC-A89H-01 2 169020280 169020280 C T STK39 Missense_Mutation p.D181N 0.30 deleterious(0) benign(0.063) TCGA-YC-A89H-01 2 171913002 171913002 T C TLK1 Silent p.S176S 0.29 TCGA-YC-A89H-01 2 171917629 171917629 C T TLK1 Missense_Mutation p.R123K 0.30 tolerated(0.06) benign(0.134) TCGA-YC-A89H-01 2 172953044 172953044 C T DLX1 3'UTR 0.33 TCGA-YC-A89H-01 2 174820883 174820883 T A SP3 Silent p.I119I 0.38 TCGA-YC-A89H-01 2 17697118 17697118 C T RAD51AP2 Silent p.K855K 0.23 TCGA-YC-A89H-01 2 178096064 178096064 C A NFE2L2 Nonsense_Mutation p.E423* 0.37 TCGA-YC-A89H-01 2 178098940 178098940 T G NFE2L2 Missense_Mutation p.E35D 0.35 deleterious(0.03) benign(0.162) TCGA-YC-A89H-01 2 178977223 178977223 G A RBM45 5'UTR 0.37 TCGA-YC-A89H-01 2 179395754 179395754 C T TTN Silent p.E35196E 0.31 TCGA-YC-A89H-01 2 179433888 179433888 C G TTN Missense_Mutation p.K25657N 0.30 TCGA-YC-A89H-01 2 179480095 179480095 C T TTN Missense_Mutation p.E16193K 0.35 TCGA-YC-A89H-01 2 179568884 179568884 G A TTN Silent p.L10071L 0.31 TCGA-YC-A89H-01 2 179604357 179604357 C A TTN Missense_Mutation p.V4535F 0.34 TCGA-YC-A89H-01 2 180819034 180819034 G A CWC22 Silent p.F529F 0.21 TCGA-YC-A89H-01 2 183993129 183993129 G T NUP35 Missense_Mutation p.R52L 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-YC-A89H-01 2 187540441 187540441 G A ITGAV Missense_Mutation p.M939I 0.32 tolerated(0.12) benign(0.002) TCGA-YC-A89H-01 2 190636505 190636505 A C ORMDL1 Missense_Mutation p.I150M 0.30 deleterious(0) probably_damaging(0.996) TCGA-YC-A89H-01 2 190670456 190670456 C T PMS1 Nonsense_Mutation p.Q132* 0.38 TCGA-YC-A89H-01 2 191865869 191865869 C T STAT1 Silent p.Q131Q 0.28 TCGA-YC-A89H-01 2 192711581 192711581 G A SDPR Missense_Mutation p.S24L 0.26 tolerated(0.06) benign(0.038) TCGA-YC-A89H-01 2 196619103 196619103 C T DNAH7 Missense_Mutation p.E3908K 0.39 deleterious(0.02) benign(0.217) TCGA-YC-A89H-01 2 197708744 197708744 G A PGAP1 Missense_Mutation p.S798L 0.25 tolerated(0.14) benign(0.003) TCGA-YC-A89H-01 2 198540087 198540087 T G RFTN2 Silent p.T32T 0.39 TCGA-YC-A89H-01 2 200137004 200137004 T C SATB2 Missense_Mutation p.Y711C 0.52 deleterious(0) possibly_damaging(0.662) TCGA-YC-A89H-01 2 202342435 202342435 G A STRADB Silent p.Q214Q 0.33 TCGA-YC-A89H-01 2 202574755 202574755 C T ALS2 Missense_Mutation p.D1377N 0.28 deleterious(0) benign(0.025) TCGA-YC-A89H-01 2 202899817 202899817 G A FZD7 Silent p.E149E 0.29 TCGA-YC-A89H-01 2 203589654 203589654 G A FAM117B Nonsense_Mutation p.W256* 0.36 TCGA-YC-A89H-01 2 20494259 20494259 G A PUM2 Nonsense_Mutation p.Q344* 0.31 TCGA-YC-A89H-01 2 206614476 206614476 G A NRP2 Missense_Mutation p.G605E 0.38 tolerated(0.89) benign(0.08) TCGA-YC-A89H-01 2 207427004 207427004 T C ADAM23 Silent p.S444S 0.24 TCGA-YC-A89H-01 2 215823029 215823029 T C ABCA12 Missense_Mutation p.Y2030C 0.29 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 2 215843115 215843115 C T ABCA12 Missense_Mutation p.G1685R 0.41 tolerated(0.26) possibly_damaging(0.862) TCGA-YC-A89H-01 2 216286869 216286869 C T FN1 Silent p.T497T 0.27 TCGA-YC-A89H-01 2 216292953 216292953 C T FN1 Missense_Mutation p.R265Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 2 216930049 216930049 T C PECR Missense_Mutation p.Y137C 0.30 deleterious(0) probably_damaging(0.996) TCGA-YC-A89H-01 2 219137580 219137580 G A PNKD Intron 0.46 TCGA-YC-A89H-01 2 219232242 219232242 G T C2orf62 Splice_Site p.X307_splice 0.19 TCGA-YC-A89H-01 2 219350413 219350413 G A USP37 Silent p.V548V 0.39 TCGA-YC-A89H-01 2 219509696 219509696 C G ZNF142 Missense_Mutation p.E515Q 0.18 deleterious(0) possibly_damaging(0.728) TCGA-YC-A89H-01 2 219525710 219525710 G A BCS1L 5'UTR 0.28 TCGA-YC-A89H-01 2 219747124 219747124 G A WNT10A Missense_Mutation p.E119K 0.35 tolerated(0.63) possibly_damaging(0.519) TCGA-YC-A89H-01 2 223386549 223386549 C T SGPP2 Missense_Mutation p.P148S 0.23 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 2 224824491 224824506 TCTTGAAGACGAGTAC - MRPL44 Frame_Shift_Del p.L141Qfs*8 0.32 TCGA-YC-A89H-01 2 227662693 227662693 C T IRS1 Silent p.L254L 0.20 TCGA-YC-A89H-01 2 227976422 227976422 C T COL4A4 Missense_Mutation p.R189K 0.41 benign(0.26) TCGA-YC-A89H-01 2 228149032 228149032 T C COL4A3 Missense_Mutation p.I951T 0.27 unknown(0) TCGA-YC-A89H-01 2 231120175 231120175 G C SP140 Missense_Mutation p.D390H 0.29 tolerated(0.07) benign(0.265) TCGA-YC-A89H-01 2 232322413 232322413 T C NCL Missense_Mutation p.Y463C 0.25 benign(0.302) TCGA-YC-A89H-01 2 233244519 233244519 C T ALPP Missense_Mutation p.S177L 0.33 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 2 233350757 233350757 C T ECEL1 Missense_Mutation p.E203K 0.33 tolerated(0.11) possibly_damaging(0.589) TCGA-YC-A89H-01 2 233671208 233671208 C T GIGYF2 Silent p.F570F 0.31 TCGA-YC-A89H-01 2 233986936 233986936 G - INPP5D Frame_Shift_Del p.D107Tfs*11 0.21 TCGA-YC-A89H-01 2 234468487 234468487 G A USP40 Silent p.L129L 0.42 TCGA-YC-A89H-01 2 234527160 234527160 G A UGT1A8 Missense_Mutation p.M269I 0.32 tolerated(0.08) benign(0.03) TCGA-YC-A89H-01 2 234545378 234545378 G A UGT1A10 Silent p.L70L 0.29 TCGA-YC-A89H-01 2 234545731 234545731 C T UGT1A10 Missense_Mutation p.S188F 0.33 deleterious(0) possibly_damaging(0.861) TCGA-YC-A89H-01 2 234545946 234545946 G A UGT1A10 Missense_Mutation p.D260N 0.30 tolerated(0.07) benign(0.068) TCGA-YC-A89H-01 2 234546003 234546003 C T UGT1A10 Nonsense_Mutation p.Q279* 0.31 TCGA-YC-A89H-01 2 234628108 234628108 G T UGT1A4 Missense_Mutation p.M214I 0.33 tolerated(0.15) benign(0.012) TCGA-YC-A89H-01 2 234847797 234847797 C T TRPM8 Silent p.L168L 0.32 TCGA-YC-A89H-01 2 238622908 238622908 C T LRRFIP1 Intron 0.30 TCGA-YC-A89H-01 2 241534647 241534647 G A CAPN10 Missense_Mutation p.D402N 0.45 tolerated(0.53) benign(0.008) TCGA-YC-A89H-01 2 242690717 242690717 G A D2HGDH Missense_Mutation p.E352K 0.26 deleterious(0.01) possibly_damaging(0.772) TCGA-YC-A89H-01 2 24307112 24307112 C T TP53I3 Missense_Mutation p.E29K 0.28 deleterious(0.02) possibly_damaging(0.66) TCGA-YC-A89H-01 2 24991255 24991255 G A NCOA1 Missense_Mutation p.E1441K 0.32 deleterious_low_confidence(0) unknown(0) TCGA-YC-A89H-01 2 26609290 26609290 C T EPT1 Silent p.L327L 0.26 TCGA-YC-A89H-01 2 26688631 26688631 C T OTOF Missense_Mutation p.D1570N 0.30 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 2 27360213 27360213 G A C2orf53 Nonsense_Mutation p.Q329* 0.36 TCGA-YC-A89H-01 2 29092776 29092776 G A TRMT61B Missense_Mutation p.S123L 0.30 tolerated(0.55) benign(0.002) TCGA-YC-A89H-01 2 29169351 29169351 G A WDR43 Missense_Mutation p.D614N 0.55 tolerated(0.24) benign(0.006) TCGA-YC-A89H-01 2 29294356 29294356 C T C2orf71 Silent p.L924L 0.35 TCGA-YC-A89H-01 2 29445212 29445212 G A ALK Silent p.I1171I 0.27 TCGA-YC-A89H-01 2 30142901 30142901 G A ALK Missense_Mutation p.R209C 0.26 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-YC-A89H-01 2 30454548 30454548 G C LBH 5'UTR 0.34 TCGA-YC-A89H-01 2 32602821 32602821 A G BIRC6 Missense_Mutation p.E164G 0.27 probably_damaging(0.986) TCGA-YC-A89H-01 2 32773024 32773024 G A BIRC6 Silent p.V4306V 0.32 TCGA-YC-A89H-01 2 32889403 32889403 C T TTC27 Missense_Mutation p.S225L 0.24 tolerated(0.15) benign(0.004) TCGA-YC-A89H-01 2 33813494 33813494 G A FAM98A Nonsense_Mutation p.Q144* 0.26 TCGA-YC-A89H-01 2 3599893 3599893 C T RNASEH1 Missense_Mutation p.E84K 0.27 tolerated(0.99) benign(0.001) TCGA-YC-A89H-01 2 36706639 36706639 G A CRIM1 Splice_Site p.X392_splice 0.21 TCGA-YC-A89H-01 2 37227737 37227737 G A HEATR5B Missense_Mutation p.S1846F 0.31 tolerated(0.25) benign(0.008) TCGA-YC-A89H-01 2 37334476 37334476 T C EIF2AK2 Missense_Mutation p.I532M 0.30 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 2 39008975 39008975 G A GEMIN6 Missense_Mutation p.E149K 0.30 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 2 39083540 39083540 C T DHX57 Missense_Mutation p.E551K 0.32 tolerated(0.16) possibly_damaging(0.7) TCGA-YC-A89H-01 2 39553393 39553393 C G MAP4K3 Missense_Mutation p.E186Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 2 43452575 43452575 G A ZFP36L2 Missense_Mutation p.S123L 0.52 deleterious(0) possibly_damaging(0.857) TCGA-YC-A89H-01 2 44429137 44429137 G A PPM1B Missense_Mutation p.D267N 0.24 tolerated(0.15) benign(0.161) TCGA-YC-A89H-01 2 48602375 48602378 AGAC - FOXN2 Frame_Shift_Del p.D364Vfs*50 0.37 TCGA-YC-A89H-01 2 48737173 48737173 G C PPP1R21 Missense_Mutation p.R702T 0.29 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 2 49247259 49247259 C G FSHR Missense_Mutation p.D89H 0.31 tolerated(0.95) benign(0.004) TCGA-YC-A89H-01 2 50149292 50149292 T A NRXN1 Silent p.V1478V 0.14 TCGA-YC-A89H-01 2 50779997 50779997 C A NRXN1 Missense_Mutation p.W536L 0.41 deleterious(0.04) probably_damaging(1) TCGA-YC-A89H-01 2 55402999 55402999 C T CLHC1 Missense_Mutation p.R563Q 0.27 tolerated(0.24) benign(0.077) TCGA-YC-A89H-01 2 60695910 60695910 G T BCL11A Silent p.I148I 0.23 TCGA-YC-A89H-01 2 61149269 61149269 G A REL Missense_Mutation p.D487N 0.34 tolerated_low_confidence(0.42) benign(0.022) TCGA-YC-A89H-01 2 61149532 61149532 G A REL Missense_Mutation p.M574I 0.31 tolerated_low_confidence(0.12) benign(0.033) TCGA-YC-A89H-01 2 61541802 61541802 C T USP34 Missense_Mutation p.E1154K 0.38 tolerated(0.11) benign(0.225) TCGA-YC-A89H-01 2 61633080 61633080 C T USP34 Silent p.L105L 0.23 TCGA-YC-A89H-01 2 63282997 63282997 C T OTX1 Missense_Mutation p.S204L 0.29 deleterious(0.01) unknown(0) TCGA-YC-A89H-01 2 63816124 63816124 G A MDH1 5'Flank 0.52 TCGA-YC-A89H-01 2 64808384 64808384 C T AFTPH Missense_Mutation p.S839F 0.33 deleterious(0) probably_damaging(0.987) TCGA-YC-A89H-01 2 65541149 65541149 T A SPRED2 Missense_Mutation p.D248V 0.33 tolerated(0.11) possibly_damaging(0.894) TCGA-YC-A89H-01 2 65659172 65659172 C T SPRED2 5'UTR 0.36 TCGA-YC-A89H-01 2 67631666 67631666 G A ETAA1 Missense_Mutation p.E618K 0.29 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 2 68882089 68882089 C T PROKR1 Missense_Mutation p.T188M 0.29 tolerated(0.2) benign(0.006) TCGA-YC-A89H-01 2 70439845 70439845 C T TIA1 3'UTR 0.16 TCGA-YC-A89H-01 2 71591363 71591363 G A ZNF638 Silent p.R566R 0.28 TCGA-YC-A89H-01 2 73476305 73476305 A G CCT7 Missense_Mutation p.M324V 0.42 tolerated(0.09) benign(0.017) TCGA-YC-A89H-01 2 73677620 73677620 G A ALMS1 Silent p.Q1321Q 0.35 TCGA-YC-A89H-01 2 74328888 74328888 C T TET3 Missense_Mutation p.P1523L 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-YC-A89H-01 2 74687176 74687176 C T WBP1 Missense_Mutation p.R117C 0.51 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 2 74718641 74718641 C T TTC31 Silent p.L240L 0.24 TCGA-YC-A89H-01 2 74752138 74752138 G A DQX1 Silent p.L143L 0.35 TCGA-YC-A89H-01 2 74779644 74779644 G C LOXL3 Missense_Mutation p.Q40E 0.23 tolerated(0.65) benign(0) TCGA-YC-A89H-01 2 74783531 74783531 G A DOK1 Missense_Mutation p.E246K 0.42 deleterious(0) probably_damaging(0.958) TCGA-YC-A89H-01 2 74808975 74808975 C T M1AP Splice_Site p.X199_splice 0.36 TCGA-YC-A89H-01 2 84518248 84518248 G A FUNDC2P2 RNA 0.24 TCGA-YC-A89H-01 2 85788098 85788098 C T GGCX Silent p.Q18Q 0.27 TCGA-YC-A89H-01 2 86831412 86831412 C T RNF103 Missense_Mutation p.D538N 0.27 tolerated(0.29) benign(0.037) TCGA-YC-A89H-01 2 9547568 9547568 G A ITGB1BP1 Intron 0.30 TCGA-YC-A89H-01 2 96803435 96803435 C T ASTL Silent p.V20V 0.14 TCGA-YC-A89H-01 2 96809649 96809649 G A DUSP2 Silent p.F286F 0.25 TCGA-YC-A89H-01 2 9683294 9683294 G A ADAM17 Missense_Mutation p.S73L 0.22 tolerated(0.05) benign(0.07) TCGA-YC-A89H-01 2 9683393 9683393 G A ADAM17 Missense_Mutation p.S40L 0.33 deleterious(0.04) probably_damaging(0.915) TCGA-YC-A89H-01 2 96959085 96959085 G A SNRNP200 Missense_Mutation p.P669S 0.32 tolerated(0.07) benign(0.103) TCGA-YC-A89H-01 2 97474370 97474370 C T CNNM4 Missense_Mutation p.S674L 0.26 tolerated(0.39) benign(0.001) TCGA-YC-A89H-01 2 97529867 97529867 G A SEMA4C Missense_Mutation p.R376W 0.42 deleterious(0) probably_damaging(0.989) TCGA-YC-A89H-01 2 98351852 98351852 G A ZAP70 Missense_Mutation p.E408K 0.32 deleterious(0.01) possibly_damaging(0.705) TCGA-YC-A89H-01 2 98779314 98779314 G A VWA3B Missense_Mutation p.G330E 0.11 tolerated(0.05) probably_damaging(1) TCGA-YC-A89H-01 3 100038017 100038017 G A TBC1D23 Missense_Mutation p.E598K 0.35 deleterious(0) probably_damaging(0.93) TCGA-YC-A89H-01 3 100103377 100103377 T A TOMM70A Missense_Mutation p.L227F 0.31 tolerated(0.14) benign(0.312) TCGA-YC-A89H-01 3 100354654 100354654 G A GPR128 Missense_Mutation p.R194K 0.37 tolerated(0.34) benign(0.164) TCGA-YC-A89H-01 3 101401679 101401679 C T RPL24 Missense_Mutation p.D89N 0.30 tolerated(0.21) benign(0.005) TCGA-YC-A89H-01 3 10291281 10291281 G A TATDN2 Missense_Mutation p.E133K 0.30 tolerated(0.13) benign(0.126) TCGA-YC-A89H-01 3 107881390 107881390 C T IFT57 Silent p.E408E 0.36 TCGA-YC-A89H-01 3 108139941 108139941 C T MYH15 Missense_Mutation p.E1295K 0.35 deleterious(0) possibly_damaging(0.859) TCGA-YC-A89H-01 3 108140037 108140037 G A MYH15 Silent p.L1263L 0.39 TCGA-YC-A89H-01 3 108147552 108147552 G A MYH15 Silent p.F1183F 0.31 TCGA-YC-A89H-01 3 108407485 108407485 C T DZIP3 Missense_Mutation p.H1106Y 0.29 tolerated(0.13) benign(0.001) TCGA-YC-A89H-01 3 108407769 108407769 C T DZIP3 Nonsense_Mutation p.Q1172* 0.42 TCGA-YC-A89H-01 3 112328866 112328866 G A CCDC80 Missense_Mutation p.S795L 0.31 tolerated(0.12) possibly_damaging(0.823) TCGA-YC-A89H-01 3 113118784 113118784 C T WDR52 Missense_Mutation p.G513E 0.30 deleterious(0) possibly_damaging(0.898) TCGA-YC-A89H-01 3 113207822 113207823 AG - SPICE1 Frame_Shift_Del p.L194Kfs*5 0.26 TCGA-YC-A89H-01 3 113753885 113753885 C T KIAA1407 Silent p.K235K 0.30 TCGA-YC-A89H-01 3 114069392 114069392 G C ZBTB20 Silent p.L511L 0.25 TCGA-YC-A89H-01 3 118865051 118865051 G A C3orf30 Silent p.P5P 0.33 TCGA-YC-A89H-01 3 119211199 119211199 G A POGLUT1 Missense_Mutation p.E365K 0.22 tolerated(0.5) benign(0.021) TCGA-YC-A89H-01 3 121207058 121207058 C G POLQ Missense_Mutation p.D1574H 0.39 deleterious(0.02) possibly_damaging(0.546) TCGA-YC-A89H-01 3 121437248 121437248 T A GOLGB1 Missense_Mutation p.E291V 0.38 possibly_damaging(0.756) TCGA-YC-A89H-01 3 122168493 122168493 G A KPNA1 Missense_Mutation p.S282L 0.32 deleterious(0.01) benign(0.208) TCGA-YC-A89H-01 3 122514265 122514265 C T DIRC2 Nonsense_Mutation p.Q76* 0.42 TCGA-YC-A89H-01 3 122842954 122842954 C G PDIA5 Missense_Mutation p.N217K 0.12 tolerated(0.95) benign(0.003) TCGA-YC-A89H-01 3 124416565 124416565 G A AC080008.1 5'Flank 0.38 TCGA-YC-A89H-01 3 126190854 126190854 C T ZXDC Nonsense_Mutation p.W367* 0.39 TCGA-YC-A89H-01 3 126724938 126724938 G A PLXNA1 Silent p.V638V 0.27 TCGA-YC-A89H-01 3 127294072 127294072 G A TPRA1 Silent p.F270F 0.32 TCGA-YC-A89H-01 3 127541207 127541207 C T MGLL 5'UTR 0.45 TCGA-YC-A89H-01 3 12859017 12859017 G A CAND2 Silent p.L862L 0.32 TCGA-YC-A89H-01 3 129116088 129116088 G A EFCAB12 3'Flank 0.34 TCGA-YC-A89H-01 3 129140642 129140642 G A EFCAB12 Silent p.L18L 0.44 TCGA-YC-A89H-01 3 132051071 132051071 G A ACPP Silent p.L113L 0.32 TCGA-YC-A89H-01 3 132071644 132071644 G A ACPP Silent p.L315L 0.29 TCGA-YC-A89H-01 3 132441124 132441124 C T NPHP3 Missense_Mutation p.E26K 0.23 tolerated(0.1) benign(0.027) TCGA-YC-A89H-01 3 136240228 136240228 C T STAG1 Missense_Mutation p.G168E 0.29 deleterious(0) probably_damaging(0.989) TCGA-YC-A89H-01 3 136240229 136240229 C T STAG1 Missense_Mutation p.G168R 0.29 deleterious(0) probably_damaging(0.992) TCGA-YC-A89H-01 3 137991953 137991953 C T ARMC8 Missense_Mutation p.R528C 0.34 deleterious(0) possibly_damaging(0.685) TCGA-YC-A89H-01 3 138195664 138195664 G A ESYT3 Missense_Mutation p.E877K 0.29 deleterious(0.03) benign(0.002) TCGA-YC-A89H-01 3 139096972 139096972 C T COPB2 Missense_Mutation p.E139K 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-YC-A89H-01 3 141161315 141161315 C T ZBTB38 Missense_Mutation p.R29W 0.36 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 3 141163331 141163331 G A ZBTB38 Missense_Mutation p.E701K 0.22 tolerated(0.07) benign(0.425) TCGA-YC-A89H-01 3 146246618 146246618 C T PLSCR1 Missense_Mutation p.G32E 0.45 tolerated(0.08) probably_damaging(0.998) TCGA-YC-A89H-01 3 150321168 150321168 C T SELT Missense_Mutation p.L7F 0.36 tolerated_low_confidence(0.24) benign(0) TCGA-YC-A89H-01 3 151046676 151046676 C T P2RY13 Silent p.L56L 0.32 TCGA-YC-A89H-01 3 151112504 151112504 C T MED12L Missense_Mutation p.S1855L 0.31 deleterious(0.01) possibly_damaging(0.516) TCGA-YC-A89H-01 3 151599304 151599304 C T SUCNR1 Missense_Mutation p.H325Y 0.45 deleterious_low_confidence(0.04) benign(0) TCGA-YC-A89H-01 3 152880442 152880442 G A RAP2B 5'UTR 0.50 TCGA-YC-A89H-01 3 154139127 154139127 G A GPR149 Nonsense_Mutation p.Q442* 0.38 TCGA-YC-A89H-01 3 155633925 155633925 G A GMPS Missense_Mutation p.E386K 0.22 deleterious(0.01) benign(0.042) TCGA-YC-A89H-01 3 156395472 156395472 G A TIPARP 5'UTR 0.31 TCGA-YC-A89H-01 3 157178083 157178083 C T VEPH1 Missense_Mutation p.R139K 0.26 tolerated(0.24) benign(0.083) TCGA-YC-A89H-01 3 160155955 160155955 T A TRIM59 Silent p.S339S 0.37 TCGA-YC-A89H-01 3 167086332 167086332 T C ZBBX Silent p.V33V 0.21 TCGA-YC-A89H-01 3 168806796 168806796 T A MECOM Nonsense_Mutation p.K1070* 0.35 TCGA-YC-A89H-01 3 168834483 168834483 G A MECOM Missense_Mutation p.R270C 0.29 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 3 169492111 169492111 C G MYNN Missense_Mutation p.L10V 0.27 tolerated(0.37) probably_damaging(0.979) TCGA-YC-A89H-01 3 171443850 171443850 A G PLD1 Missense_Mutation p.I208T 0.34 deleterious(0) benign(0.217) TCGA-YC-A89H-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.37 deleterious(0.04) probably_damaging(0.96) TCGA-YC-A89H-01 3 179066629 179066629 C T MFN1 Intron 0.31 TCGA-YC-A89H-01 3 179066663 179066663 G A MFN1 Silent p.L8L 0.25 TCGA-YC-A89H-01 3 182841942 182841942 C A LAMP3 Missense_Mutation p.G393V 0.36 tolerated(0.18) benign(0.247) TCGA-YC-A89H-01 3 184044703 184044703 G A EIF4G1 Silent p.L1127L 0.34 TCGA-YC-A89H-01 3 184429433 184429433 C T MAGEF1 Silent p.A59A 0.31 TCGA-YC-A89H-01 3 185407370 185407370 G A IGF2BP2 Silent p.F150F 0.39 TCGA-YC-A89H-01 3 186331074 186331074 C T AHSG Silent p.I48I 0.32 TCGA-YC-A89H-01 3 186335058 186335058 G A AHSG Silent p.A164A 0.28 TCGA-YC-A89H-01 3 186502264 186502264 G A EIF4A2 Missense_Mutation p.E25K 0.36 tolerated_low_confidence(0.11) benign(0.003) TCGA-YC-A89H-01 3 186502365 186502365 G A EIF4A2 Missense_Mutation p.E30K 0.25 tolerated(0.21) benign(0.007) TCGA-YC-A89H-01 3 188956639 188956639 G A TPRG1 Silent p.L140L 0.35 TCGA-YC-A89H-01 3 192516720 192516720 G A MB21D2 Nonsense_Mutation p.Q311* 0.39 TCGA-YC-A89H-01 3 194408723 194408723 G A FAM43A Missense_Mutation p.E390K 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.841) TCGA-YC-A89H-01 3 195538763 195538763 G A MUC4 5'UTR 0.50 TCGA-YC-A89H-01 3 19575447 19575447 G A KCNH8 Silent p.V1060V 0.26 TCGA-YC-A89H-01 3 196733543 196733543 G A MFI2 Silent p.N605N 0.35 TCGA-YC-A89H-01 3 197009621 197009621 C T DLG1 Missense_Mutation p.E83K 0.40 deleterious(0.01) benign(0.087) TCGA-YC-A89H-01 3 24001215 24001215 G A NR1D2 Silent p.K142K 0.31 TCGA-YC-A89H-01 3 35833933 35833933 C T ARPP21 Missense_Mutation p.P699S 0.36 tolerated(0.27) benign(0.003) TCGA-YC-A89H-01 3 36899129 36899129 C T TRANK1 Missense_Mutation p.R651K 0.37 tolerated(1) benign(0.001) TCGA-YC-A89H-01 3 37363313 37363313 C T GOLGA4 Missense_Mutation p.A568V 0.32 benign(0.299) TCGA-YC-A89H-01 3 38537876 38537876 C T EXOG Silent p.I6I 0.28 TCGA-YC-A89H-01 3 40453404 40453404 G A ENTPD3 Missense_Mutation p.G130R 0.25 tolerated(0.45) benign(0.014) TCGA-YC-A89H-01 3 41291015 41291015 G A ULK4 Silent p.L1243L 0.34 TCGA-YC-A89H-01 3 42201732 42201732 G A TRAK1 Intron 0.40 TCGA-YC-A89H-01 3 42265055 42265055 C T TRAK1 Silent p.L896L 0.24 TCGA-YC-A89H-01 3 42573331 42573331 C T VIPR1 Silent p.I296I 0.35 TCGA-YC-A89H-01 3 42680023 42680023 G A NKTR Missense_Mutation p.D943N 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.514) TCGA-YC-A89H-01 3 44488184 44488184 G A ZNF445 Silent p.L993L 0.31 TCGA-YC-A89H-01 3 44673962 44673962 C T ZNF197 Intron 0.30 TCGA-YC-A89H-01 3 44803138 44803138 C T KIAA1143 5'UTR 0.37 TCGA-YC-A89H-01 3 45038647 45038647 C T EXOSC7 Missense_Mutation p.T108I 0.37 tolerated(0.48) benign(0.011) TCGA-YC-A89H-01 3 45077243 45077243 G A CLEC3B Missense_Mutation p.D146N 0.38 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 3 45533153 45533153 G T LARS2 Missense_Mutation p.V462F 0.34 deleterious(0) probably_damaging(0.956) TCGA-YC-A89H-01 3 45636346 45636346 G A LIMD1 5'Flank 0.12 TCGA-YC-A89H-01 3 46062858 46062858 G T XCR1 Missense_Mutation p.F194L 0.21 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 3 47037463 47037463 C T NBEAL2 Silent p.F691F 0.38 TCGA-YC-A89H-01 3 47125360 47125360 T A SETD2 Silent p.L1970L 0.37 TCGA-YC-A89H-01 3 47162323 47162323 G A SETD2 Missense_Mutation p.S1268F 0.42 deleterious(0) possibly_damaging(0.486) TCGA-YC-A89H-01 3 47450465 47450465 C T PTPN23 Silent p.F510F 0.20 TCGA-YC-A89H-01 3 48310029 48310029 G A ZNF589 Missense_Mutation p.R283Q 0.36 tolerated(0.17) benign(0.153) TCGA-YC-A89H-01 3 48508139 48508139 C T TREX1 Missense_Mutation p.P84S 0.24 deleterious(0.02) probably_damaging(1) TCGA-YC-A89H-01 3 48677419 48677419 G C CELSR3 Missense_Mutation p.S3200C 0.30 deleterious_low_confidence(0.04) benign(0.051) TCGA-YC-A89H-01 3 48699002 48699002 C T CELSR3 Missense_Mutation p.E356K 0.35 deleterious(0) possibly_damaging(0.662) TCGA-YC-A89H-01 3 48732539 48732539 G A IP6K2 Silent p.F62F 0.38 TCGA-YC-A89H-01 3 48732569 48732569 G A IP6K2 Silent p.Y52Y 0.27 TCGA-YC-A89H-01 3 49293802 49293802 C T CCDC36 Missense_Mutation p.S291F 0.44 deleterious(0.04) benign(0.053) TCGA-YC-A89H-01 3 49377444 49377444 C T USP4 Missense_Mutation p.G5E 0.35 deleterious(0) possibly_damaging(0.543) TCGA-YC-A89H-01 3 49765080 49765080 C T IP6K1 Silent p.Q267Q 0.28 TCGA-YC-A89H-01 3 49841945 49841945 C T FAM212A Missense_Mutation p.S130L 0.24 deleterious(0.04) benign(0.016) TCGA-YC-A89H-01 3 49940232 49940232 C T MST1R Missense_Mutation p.D271N 0.36 tolerated(0.46) benign(0.158) TCGA-YC-A89H-01 3 50009541 50009541 T C RBM6 Missense_Mutation p.I458T 0.33 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 3 50197164 50197164 A G SEMA3F Missense_Mutation p.K37E 0.25 tolerated(0.1) benign(0.138) TCGA-YC-A89H-01 3 50379881 50379881 C T ZMYND10 Missense_Mutation p.E274K 0.32 tolerated(0.1) benign(0.015) TCGA-YC-A89H-01 3 50403695 50403695 C T CACNA2D2 Intron 0.31 TCGA-YC-A89H-01 3 51418790 51418790 C T DOCK3 Nonsense_Mutation p.Q1965* 0.26 TCGA-YC-A89H-01 3 51425299 51425299 G A MANF Silent p.E118E 0.31 TCGA-YC-A89H-01 3 51429225 51429225 C T RBM15B Missense_Mutation p.S132F 0.20 tolerated(0.05) benign(0.015) TCGA-YC-A89H-01 3 51672178 51672178 G A RAD54L2 Silent p.L567L 0.19 TCGA-YC-A89H-01 3 51672185 51672185 C T RAD54L2 Missense_Mutation p.H570Y 0.16 deleterious(0.05) benign(0.433) TCGA-YC-A89H-01 3 51978429 51978429 C T PARP3 Silent p.I119I 0.35 TCGA-YC-A89H-01 3 52257038 52257038 C T TLR9 Missense_Mutation p.E586K 0.24 tolerated(0.91) benign(0.002) TCGA-YC-A89H-01 3 5244802 5244802 G A EDEM1 Nonsense_Mutation p.W337* 0.25 TCGA-YC-A89H-01 3 5244803 5244803 G A EDEM1 Nonsense_Mutation p.W337* 0.25 TCGA-YC-A89H-01 3 52539784 52539784 A G STAB1 Missense_Mutation p.Y561C 0.29 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 3 52797539 52797539 C T NEK4 Silent p.L256L 0.34 TCGA-YC-A89H-01 3 52816049 52816049 G A ITIH1 Missense_Mutation p.D261N 0.20 deleterious(0.03) possibly_damaging(0.74) TCGA-YC-A89H-01 3 53321679 53321679 C T DCP1A Splice_Site p.X559_splice 0.37 TCGA-YC-A89H-01 3 53378932 53378932 C T DCP1A Missense_Mutation p.R58Q 0.31 tolerated(0.12) possibly_damaging(0.905) TCGA-YC-A89H-01 3 53756368 53756368 C T CACNA1D Silent p.F531F 0.29 TCGA-YC-A89H-01 3 56667336 56667336 C T FAM208A Missense_Mutation p.M1161I 0.35 tolerated(0.47) benign(0.002) TCGA-YC-A89H-01 3 57302583 57302583 C T ASB14 3'UTR 0.42 TCGA-YC-A89H-01 3 57542118 57542118 C G PDE12 Silent p.L4L 0.50 TCGA-YC-A89H-01 3 57647245 57647245 G T DENND6A Missense_Mutation p.H183N 0.27 tolerated(1) benign(0.004) TCGA-YC-A89H-01 3 62503846 62503846 C G CADPS Missense_Mutation p.E791Q 0.28 deleterious(0.02) benign(0.403) TCGA-YC-A89H-01 3 67054363 67054363 G A KBTBD8 Silent p.L324L 0.33 TCGA-YC-A89H-01 3 69988264 69988264 G A MITF Missense_Mutation p.E200K 0.43 tolerated(0.48) benign(0.409) TCGA-YC-A89H-01 3 9757688 9757688 G A CPNE9 Missense_Mutation p.E285K 0.45 tolerated(0.08) benign(0.075) TCGA-YC-A89H-01 3 97596156 97596156 G A CRYBG3 Missense_Mutation p.E92K 0.31 deleterious_low_confidence(0.02) benign(0.149) TCGA-YC-A89H-01 3 9822006 9822006 T C TADA3 3'UTR 0.44 TCGA-YC-A89H-01 3 9885182 9885182 C T RPUSD3 Missense_Mutation p.D77N 0.37 tolerated(0.18) benign(0.086) TCGA-YC-A89H-01 3 99568911 99568911 C T FILIP1L Missense_Mutation p.E537K 0.37 deleterious(0) possibly_damaging(0.611) TCGA-YC-A89H-01 4 106603787 106603787 G T INTS12 3'UTR 0.25 TCGA-YC-A89H-01 4 109748335 109748335 C T COL25A1 Missense_Mutation p.G574R 0.13 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 4 113436602 113436602 C T NEUROG2 Silent p.L10L 0.30 TCGA-YC-A89H-01 4 11401089 11401089 C T HS3ST1 Missense_Mutation p.D181N 0.21 tolerated(0.63) benign(0.001) TCGA-YC-A89H-01 4 119203400 119203400 T C PRSS12 Splice_Site p.X774_splice 0.32 TCGA-YC-A89H-01 4 119219966 119219966 G A PRSS12 Missense_Mutation p.H587Y 0.30 deleterious(0) probably_damaging(0.94) TCGA-YC-A89H-01 4 119948229 119948229 T G SYNPO2 Missense_Mutation p.H235Q 0.43 tolerated(0.66) benign(0.002) TCGA-YC-A89H-01 4 120192767 120192767 G A USP53 Nonsense_Mutation p.W584* 0.49 TCGA-YC-A89H-01 4 121720869 121720869 A C PRDM5 Missense_Mutation p.M326R 0.22 tolerated(0.43) benign(0.001) TCGA-YC-A89H-01 4 121958145 121958145 A G NDNF Silent p.Y327Y 0.31 TCGA-YC-A89H-01 4 123855638 123855638 G A SPATA5 Missense_Mutation p.E298K 0.28 tolerated(0.57) benign(0.003) TCGA-YC-A89H-01 4 125593279 125593279 A T ANKRD50 Missense_Mutation p.F385I 0.41 deleterious(0.03) benign(0.397) TCGA-YC-A89H-01 4 139994689 139994689 A G ELF2 Missense_Mutation p.C91R 0.28 tolerated(0.69) benign(0.346) TCGA-YC-A89H-01 4 141327215 141327215 C T CLGN Silent p.L100L 0.31 TCGA-YC-A89H-01 4 141471572 141471572 C T ELMOD2 3'UTR 0.37 TCGA-YC-A89H-01 4 147177602 147177602 C T SLC10A7 3'UTR 0.29 TCGA-YC-A89H-01 4 153250867 153250867 G A FBXW7 Missense_Mutation p.S398F 0.19 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 4 155298521 155298521 C T DCHS2 Missense_Mutation p.E104K 0.14 tolerated(0.07) possibly_damaging(0.575) TCGA-YC-A89H-01 4 155507193 155507193 T A FGA Missense_Mutation p.K463I 0.38 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 4 156764946 156764946 C T ASIC5 Missense_Mutation p.D250N 0.32 tolerated(0.05) benign(0.364) TCGA-YC-A89H-01 4 157732150 157732150 C T PDGFC Missense_Mutation p.E112K 0.34 deleterious(0.02) possibly_damaging(0.657) TCGA-YC-A89H-01 4 158233929 158233929 G A GRIA2 Missense_Mutation p.E190K 0.38 tolerated(0.87) benign(0.004) TCGA-YC-A89H-01 4 159593605 159593605 G A ETFDH 5'UTR 0.24 TCGA-YC-A89H-01 4 160273834 160273834 C T RAPGEF2 Intron 0.20 TCGA-YC-A89H-01 4 166231780 166231780 C T KLHL2 Missense_Mutation p.S376F 0.34 deleterious(0.04) benign(0.335) TCGA-YC-A89H-01 4 184930682 184930682 C T STOX2 Silent p.L231L 0.28 TCGA-YC-A89H-01 4 185329353 185329353 G A IRF2 Missense_Mutation p.S163L 0.34 tolerated(0.3) benign(0.086) TCGA-YC-A89H-01 4 187539237 187539237 C T FAT1 Missense_Mutation p.D2835N 0.30 probably_damaging(1) TCGA-YC-A89H-01 4 187540860 187540860 C T FAT1 Missense_Mutation p.E2294K 0.31 probably_damaging(0.984) TCGA-YC-A89H-01 4 187630674 187630674 C T FAT1 Missense_Mutation p.G103E 0.31 probably_damaging(0.999) TCGA-YC-A89H-01 4 188923916 188923916 G A ZFP42 5'UTR 0.28 TCGA-YC-A89H-01 4 189012611 189012611 G A TRIML2 Silent p.L360L 0.26 TCGA-YC-A89H-01 4 23886439 23886439 C T PPARGC1A Nonsense_Mutation p.W57* 0.22 TCGA-YC-A89H-01 4 25823683 25823683 C T SEL1L3 Missense_Mutation p.A409T 0.38 tolerated(0.13) benign(0.002) TCGA-YC-A89H-01 4 27009304 27009304 A G STIM2 Silent p.L377L 0.25 TCGA-YC-A89H-01 4 2701752 2701752 G A FAM193A Missense_Mutation p.E994K 0.29 deleterious(0.02) probably_damaging(0.979) TCGA-YC-A89H-01 4 2949351 2949351 G A NOP14 Intron 0.39 TCGA-YC-A89H-01 4 2954116 2954116 T G NOP14 Silent p.A252A 0.22 TCGA-YC-A89H-01 4 37591716 37591716 C T C4orf19 Silent p.L13L 0.34 TCGA-YC-A89H-01 4 3769734 3769734 C T ADRA2C 3'UTR 0.19 TCGA-YC-A89H-01 4 38933952 38933952 G A FAM114A1 Missense_Mutation p.E474K 0.31 tolerated(0.51) possibly_damaging(0.562) TCGA-YC-A89H-01 4 48545939 48545939 G A FRYL Missense_Mutation p.A1826V 0.28 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 4 48578138 48578165 GATGTTGCTGCACTGCAGCAAAGGATCA - FRYL Frame_Shift_Del p.L868Rfs*10 0.40 TCGA-YC-A89H-01 4 53731532 53731532 C G RASL11B Missense_Mutation p.Q103E 0.40 tolerated(0.2) benign(0.02) TCGA-YC-A89H-01 4 53773627 53773627 C T SCFD2 Missense_Mutation p.M613I 0.35 deleterious(0.01) probably_damaging(0.927) TCGA-YC-A89H-01 4 55575589 55575589 G A KIT Splice_Site p.X372_splice 0.25 TCGA-YC-A89H-01 4 56325414 56325414 C T CLOCK Missense_Mutation p.E192K 0.28 deleterious(0) probably_damaging(0.978) TCGA-YC-A89H-01 4 57354126 57354126 A G SRP72 Missense_Mutation p.K391E 0.29 tolerated(0.76) benign(0.024) TCGA-YC-A89H-01 4 57777432 57777432 G A REST Missense_Mutation p.D210N 0.38 deleterious(0.05) probably_damaging(0.968) TCGA-YC-A89H-01 4 57842875 57842875 C T NOA1 Missense_Mutation p.E293K 0.39 tolerated(0.7) benign(0.001) TCGA-YC-A89H-01 4 65170913 65170913 T C TECRL Missense_Mutation p.Y234C 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-YC-A89H-01 4 675712 675712 G A MYL5 Missense_Mutation p.D151N 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-YC-A89H-01 4 6826366 6826366 C T KIAA0232 Silent p.L62L 0.23 TCGA-YC-A89H-01 4 68497456 68497456 G C UBA6 Missense_Mutation p.S743C 0.26 tolerated(0.22) benign(0.002) TCGA-YC-A89H-01 4 68956350 68956350 G A TMPRSS11F Missense_Mutation p.S58F 0.24 tolerated(0.05) possibly_damaging(0.88) TCGA-YC-A89H-01 4 69535850 69535850 C T UGT2B15 Missense_Mutation p.E163K 0.30 deleterious(0.04) benign(0.259) TCGA-YC-A89H-01 4 7043630 7043630 G A CCDC96 Missense_Mutation p.R346W 0.39 tolerated(0.09) benign(0.067) TCGA-YC-A89H-01 4 7045505 7045505 G A TADA2B Missense_Mutation p.E67K 0.53 tolerated(0.77) benign(0.063) TCGA-YC-A89H-01 4 71201787 71201787 C T CABS1 Missense_Mutation p.S344F 0.37 tolerated(0.19) benign(0.116) TCGA-YC-A89H-01 4 72204806 72204806 G A SLC4A4 Intron 0.39 TCGA-YC-A89H-01 4 74606306 74606306 G A IL8 5'UTR 0.40 TCGA-YC-A89H-01 4 77021956 77021956 A T ART3 Missense_Mutation p.N296Y 0.27 deleterious(0.03) benign(0.001) TCGA-YC-A89H-01 4 77230462 77230462 C G FAM47E-STBD1 Missense_Mutation p.S129C 0.31 deleterious(0) probably_damaging(0.991) TCGA-YC-A89H-01 4 77677743 77677743 C T SHROOM3 Silent p.F1617F 0.22 TCGA-YC-A89H-01 4 78080565 78080565 G A CCNG2 Missense_Mutation p.D62N 0.22 tolerated(0.07) possibly_damaging(0.549) TCGA-YC-A89H-01 4 8398699 8398699 C T ACOX3 Missense_Mutation p.E341K 0.24 tolerated(0.63) benign(0.008) TCGA-YC-A89H-01 4 85660179 85660179 G A WDFY3 Silent p.S2186S 0.21 TCGA-YC-A89H-01 4 85750239 85750239 C G WDFY3 Missense_Mutation p.D292H 0.29 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 4 8609135 8609135 C T CPZ Missense_Mutation p.P404S 0.45 tolerated(0.07) probably_damaging(0.926) TCGA-YC-A89H-01 4 87022281 87022281 G A MAPK10 Silent p.F218F 0.28 TCGA-YC-A89H-01 4 87680178 87680178 G A PTPN13 Missense_Mutation p.E1169K 0.32 deleterious(0) possibly_damaging(0.702) TCGA-YC-A89H-01 4 87691131 87691131 C T PTPN13 Nonsense_Mutation p.Q1572* 0.37 TCGA-YC-A89H-01 4 87693977 87693977 C T PTPN13 Nonsense_Mutation p.Q1744* 0.37 TCGA-YC-A89H-01 4 87735708 87735708 G A PTPN13 3'UTR 0.25 TCGA-YC-A89H-01 4 88029369 88029369 G A AFF1 Missense_Mutation p.E479K 0.40 tolerated(0.49) unknown(0) TCGA-YC-A89H-01 4 89042828 89042828 T G ABCG2 Missense_Mutation p.L216F 0.42 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 4 89744315 89744315 C T FAM13A Intron 0.26 TCGA-YC-A89H-01 4 906564 906564 C T GAK Missense_Mutation p.E76K 0.31 deleterious(0.04) possibly_damaging(0.728) TCGA-YC-A89H-01 4 95202709 95202709 C T SMARCAD1 Silent p.L900L 0.30 TCGA-YC-A89H-01 4 96222806 96222806 C T UNC5C Nonsense_Mutation p.W147* 0.38 TCGA-YC-A89H-01 5 102509653 102509653 C T PPIP5K2 Missense_Mutation p.L836F 0.30 tolerated(0.49) benign(0.036) TCGA-YC-A89H-01 5 10403635 10403635 C T MARCH6 Silent p.F438F 0.44 TCGA-YC-A89H-01 5 110427874 110427874 G A WDR36 5'UTR 0.17 TCGA-YC-A89H-01 5 112177639 112177660 TCAAGCTGCTGCTGCTGCATGT - APC Frame_Shift_Del p.Q2117Yfs*15 0.28 TCGA-YC-A89H-01 5 112203252 112203252 G T SRP19 3'UTR 0.48 TCGA-YC-A89H-01 5 114951943 114951943 G A TMED7 Missense_Mutation p.S213L 0.33 deleterious(0) probably_damaging(0.994) TCGA-YC-A89H-01 5 118440916 118440916 G A DMXL1 Silent p.L109L 0.28 TCGA-YC-A89H-01 5 118837760 118837760 G A HSD17B4 Missense_Mutation p.E437K 0.19 deleterious(0.03) possibly_damaging(0.799) TCGA-YC-A89H-01 5 128977563 128977563 C A ADAMTS19 Nonsense_Mutation p.C588* 0.23 TCGA-YC-A89H-01 5 132197721 132197721 C T GDF9 Missense_Mutation p.D309N 0.31 tolerated(0.53) benign(0.002) TCGA-YC-A89H-01 5 132203221 132203221 G A UQCRQ Missense_Mutation p.E66K 0.32 tolerated(0.32) probably_damaging(0.959) TCGA-YC-A89H-01 5 132427046 132427046 C T HSPA4 Nonsense_Mutation p.Q514* 0.29 TCGA-YC-A89H-01 5 134294749 134294749 G A PCBD2 Missense_Mutation p.R79Q 0.25 tolerated(0.08) benign(0.345) TCGA-YC-A89H-01 5 134367055 134367055 C T PITX1 Missense_Mutation p.E105K 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-YC-A89H-01 5 134696373 134696373 C T H2AFY Intron 0.25 TCGA-YC-A89H-01 5 137056255 137056255 C T KLHL3 Silent p.Q11Q 0.38 TCGA-YC-A89H-01 5 137495815 137495815 G A BRD8 Silent p.I825I 0.31 TCGA-YC-A89H-01 5 137522004 137522004 G A KIF20A Missense_Mutation p.E747K 0.30 tolerated(0.43) possibly_damaging(0.901) TCGA-YC-A89H-01 5 137754821 137754821 G A KDM3B Silent p.L1205L 0.30 TCGA-YC-A89H-01 5 137909535 137909535 C T HSPA9 Missense_Mutation p.E49K 0.25 tolerated_low_confidence(0.44) benign(0.355) TCGA-YC-A89H-01 5 139260538 139260538 G A NRG2 Silent p.F298F 0.27 TCGA-YC-A89H-01 5 139725498 139725498 C T HBEGF Missense_Mutation p.R73K 0.28 tolerated(0.08) benign(0.001) TCGA-YC-A89H-01 5 140182289 140182289 G A PCDHA3 Missense_Mutation p.A503T 0.22 tolerated_low_confidence(0.08) benign(0.16) TCGA-YC-A89H-01 5 140474987 140474987 G A PCDHB2 Missense_Mutation p.E205K 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-YC-A89H-01 5 140750790 140750790 A C PCDHGB3 Missense_Mutation p.I277L 0.31 tolerated(0.08) benign(0.191) TCGA-YC-A89H-01 5 141313933 141313933 G A KIAA0141 Silent p.L342L 0.21 TCGA-YC-A89H-01 5 141325137 141325137 C T PCDH12 Missense_Mutation p.E1122K 0.32 tolerated(0.11) benign(0.055) TCGA-YC-A89H-01 5 145969574 145969574 G A PPP2R2B Missense_Mutation p.S426L 0.26 tolerated(0.32) benign(0.003) TCGA-YC-A89H-01 5 147012302 147012302 C T JAKMIP2 Missense_Mutation p.E573K 0.20 deleterious(0) probably_damaging(0.969) TCGA-YC-A89H-01 5 147778656 147778656 G A FBXO38 Missense_Mutation p.D75N 0.29 tolerated(0.12) probably_damaging(0.987) TCGA-YC-A89H-01 5 148207510 148207510 A C ADRB2 Missense_Mutation p.K372N 0.44 tolerated(0.35) benign(0.138) TCGA-YC-A89H-01 5 148422323 148422323 C T SH3TC2 Missense_Mutation p.E155K 0.37 tolerated(0.13) benign(0.134) TCGA-YC-A89H-01 5 148929649 148929649 G A CSNK1A1 Silent p.I73I 0.39 TCGA-YC-A89H-01 5 148980702 148980702 C T ARHGEF37 Missense_Mutation p.S73L 0.34 tolerated(0.25) possibly_damaging(0.53) TCGA-YC-A89H-01 5 149227083 149227083 G A PPARGC1B Missense_Mutation p.D1012N 0.33 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 5 149264137 149264137 C T PDE6A Silent p.L644L 0.31 TCGA-YC-A89H-01 5 150422465 150422465 C T TNIP1 Missense_Mutation p.E332K 0.39 deleterious(0) probably_damaging(0.94) TCGA-YC-A89H-01 5 153026679 153026679 G A GRIA1 Missense_Mutation p.D148N 0.32 tolerated(0.11) benign(0.133) TCGA-YC-A89H-01 5 154188120 154188120 G T LARP1 Nonsense_Mutation p.E857* 0.37 TCGA-YC-A89H-01 5 15937075 15937075 G T FBXL7 Missense_Mutation p.G419V 0.30 deleterious(0.01) probably_damaging(1) TCGA-YC-A89H-01 5 161569245 161569245 C T GABRG2 Missense_Mutation p.P322L 0.34 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 5 16465732 16465732 C T ZNF622 Missense_Mutation p.D15N 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-YC-A89H-01 5 16508699 16508699 C T FAM134B Intron 0.29 TCGA-YC-A89H-01 5 16674998 16674998 C G MYO10 Missense_Mutation p.R1643P 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-YC-A89H-01 5 167855066 167855066 G A WWC1 Silent p.L613L 0.33 TCGA-YC-A89H-01 5 169101358 169101358 T C DOCK2 Missense_Mutation p.W127R 0.28 tolerated(0.13) benign(0.301) TCGA-YC-A89H-01 5 172197189 172197189 G A DUSP1 Missense_Mutation p.S163F 0.40 deleterious(0.03) benign(0.024) TCGA-YC-A89H-01 5 174868908 174868908 C T DRD1 Missense_Mutation p.E399K 0.40 tolerated_low_confidence(0.17) benign(0.062) TCGA-YC-A89H-01 5 174936035 174936035 G C SFXN1 Missense_Mutation p.R55S 0.42 deleterious(0) benign(0.123) TCGA-YC-A89H-01 5 175812323 175812323 C T NOP16 Missense_Mutation p.E98K 0.33 deleterious(0) probably_damaging(0.951) TCGA-YC-A89H-01 5 175813862 175813862 G A NOP16 Missense_Mutation p.R89W 0.29 deleterious(0) probably_damaging(0.996) TCGA-YC-A89H-01 5 176025291 176025291 C T GPRIN1 Silent p.T515T 0.32 TCGA-YC-A89H-01 5 176831599 176831599 G A F12 Missense_Mutation p.S234L 0.40 deleterious(0) probably_damaging(0.941) TCGA-YC-A89H-01 5 176938866 176938866 C T DDX41 Missense_Mutation p.E599K 0.38 tolerated(0.07) benign(0.032) TCGA-YC-A89H-01 5 176943429 176943429 C T DDX41 Missense_Mutation p.R53Q 0.31 tolerated(0.46) benign(0) TCGA-YC-A89H-01 5 176966139 176966140 - G FAM193B Frame_Shift_Ins p.A74Rfs*34 0.36 TCGA-YC-A89H-01 5 178032376 178032376 T C CLK4 Missense_Mutation p.D381G 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-YC-A89H-01 5 178139807 178139807 C T ZNF354A Missense_Mutation p.E358K 0.35 deleterious(0.04) possibly_damaging(0.602) TCGA-YC-A89H-01 5 179044863 179044863 T A HNRNPH1 Silent p.T286T 0.33 TCGA-YC-A89H-01 5 179201275 179201275 G A MAML1 Silent p.L816L 0.47 TCGA-YC-A89H-01 5 179320221 179320221 G A TBC1D9B Missense_Mutation p.S275L 0.35 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 5 179676058 179676058 G A MAPK9 Silent p.C177C 0.34 TCGA-YC-A89H-01 5 180219371 180219371 G A MGAT1 Missense_Mutation p.R201C 0.29 possibly_damaging(0.601) TCGA-YC-A89H-01 5 180582458 180582458 G C OR2V2 Missense_Mutation p.L172F 0.29 deleterious(0.01) possibly_damaging(0.493) TCGA-YC-A89H-01 5 33588803 33588803 C T ADAMTS12 Silent p.P922P 0.33 TCGA-YC-A89H-01 5 35003870 35003870 G A AGXT2 Nonsense_Mutation p.Q479* 0.21 TCGA-YC-A89H-01 5 36168458 36168458 G A SKP2 Missense_Mutation p.E194K 0.40 tolerated(0.52) benign(0.001) TCGA-YC-A89H-01 5 36608684 36608684 C T SLC1A3 Silent p.L53L 0.37 TCGA-YC-A89H-01 5 37162644 37162644 G A C5orf42 Missense_Mutation p.S2538L 0.31 deleterious(0) possibly_damaging(0.804) TCGA-YC-A89H-01 5 38481558 38481558 C T LIFR 3'UTR 0.43 TCGA-YC-A89H-01 5 38490302 38490302 T C LIFR Missense_Mutation p.I719M 0.29 tolerated(0.27) benign(0.03) TCGA-YC-A89H-01 5 38924645 38924645 G A OSMR Silent p.L664L 0.32 TCGA-YC-A89H-01 5 40692112 40692112 C T PTGER4 Nonsense_Mutation p.Q367* 0.49 TCGA-YC-A89H-01 5 40841524 40841524 G A CARD6 Missense_Mutation p.E14K 0.22 tolerated(0.11) benign(0.175) TCGA-YC-A89H-01 5 40841567 40841567 C T CARD6 Missense_Mutation p.S28F 0.33 deleterious(0) probably_damaging(0.984) TCGA-YC-A89H-01 5 41382398 41382398 A G PLCXD3 Silent p.H114H 0.35 TCGA-YC-A89H-01 5 43649253 43649253 C T NNT Silent p.L483L 0.27 TCGA-YC-A89H-01 5 53815552 53815552 A G SNX18 Silent p.L590L 0.22 TCGA-YC-A89H-01 5 5460699 5460699 G A KIAA0947 Missense_Mutation p.E418K 0.31 tolerated(0.09) benign(0.377) TCGA-YC-A89H-01 5 54683862 54683862 G A SKIV2L2 Missense_Mutation p.E705K 0.35 tolerated(0.79) benign(0.008) TCGA-YC-A89H-01 5 55412519 55412519 G A ANKRD55 Silent p.I296I 0.36 TCGA-YC-A89H-01 5 58999503 58999503 G A PDE4D Intron 0.26 TCGA-YC-A89H-01 5 64064923 64064923 G A CWC27 5'UTR 0.33 TCGA-YC-A89H-01 5 64907623 64907623 G A TRIM23 Missense_Mutation p.S151F 0.36 deleterious(0) probably_damaging(0.929) TCGA-YC-A89H-01 5 6633867 6633867 G A SRD5A1 Missense_Mutation p.E60K 0.36 deleterious(0) possibly_damaging(0.831) TCGA-YC-A89H-01 5 68565106 68565106 G A CDK7 Missense_Mutation p.E234K 0.33 deleterious(0.03) benign(0.306) TCGA-YC-A89H-01 5 73187954 73187954 G A ARHGEF28 Silent p.L1155L 0.38 TCGA-YC-A89H-01 5 73931590 73931590 G A ENC1 Silent p.L241L 0.31 TCGA-YC-A89H-01 5 7396529 7396529 G A ADCY2 Missense_Mutation p.M40I 0.32 tolerated(0.56) benign(0.007) TCGA-YC-A89H-01 5 74065137 74065137 C T NSA2 Missense_Mutation p.S97F 0.18 deleterious(0) benign(0.394) TCGA-YC-A89H-01 5 74893849 74893849 G A POLK 3'UTR 0.56 TCGA-YC-A89H-01 5 75008251 75008251 G A POC5 Intron 0.27 TCGA-YC-A89H-01 5 77524055 77524055 C A AP3B1 Missense_Mutation p.K96N 0.24 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 5 79028504 79028504 G A CMYA5 Missense_Mutation p.D1306N 0.39 possibly_damaging(0.456) TCGA-YC-A89H-01 5 79366859 79366859 A G THBS4 Missense_Mutation p.I526V 0.29 tolerated(1) benign(0.001) TCGA-YC-A89H-01 5 87492196 87492196 C T TMEM161B Missense_Mutation p.M432I 0.37 tolerated(0.44) benign(0.193) TCGA-YC-A89H-01 5 88057050 88057050 C T MEF2C Intron 0.29 TCGA-YC-A89H-01 5 88057051 88057051 C T MEF2C Intron 0.29 TCGA-YC-A89H-01 5 90012343 90012343 G A GPR98 Missense_Mutation p.E3082K 0.54 benign(0.211) TCGA-YC-A89H-01 5 90074380 90074380 G A GPR98 Missense_Mutation p.R4268Q 0.41 benign(0.113) TCGA-YC-A89H-01 5 94939189 94939189 G A ARSK Missense_Mutation p.D524N 0.30 tolerated(0.46) benign(0.003) TCGA-YC-A89H-01 5 95242235 95242235 G A ELL2 Silent p.L245L 0.22 TCGA-YC-A89H-01 6 100009490 100009490 G A CCNC Silent p.F69F 0.35 TCGA-YC-A89H-01 6 102124507 102124507 G A GRIK2 Missense_Mutation p.R184H 0.33 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 6 10400745 10400745 G A TFAP2A Missense_Mutation p.L321F 0.26 deleterious(0.02) benign(0.305) TCGA-YC-A89H-01 6 10695300 10695300 G A PAK1IP1 Missense_Mutation p.E28K 0.26 tolerated(0.3) benign(0.043) TCGA-YC-A89H-01 6 108204326 108204326 C T SEC63 Missense_Mutation p.E567K 0.34 tolerated(0.28) benign(0.004) TCGA-YC-A89H-01 6 108204329 108204329 C T SEC63 Missense_Mutation p.E566K 0.37 tolerated(0.29) benign(0.028) TCGA-YC-A89H-01 6 108616340 108616340 G A LACE1 Silent p.L19L 0.35 TCGA-YC-A89H-01 6 109765037 109765037 G A SMPD2 Missense_Mutation p.D401N 0.30 tolerated_low_confidence(0.22) benign(0.009) TCGA-YC-A89H-01 6 109770036 109770036 C T MICAL1 Silent p.Q521Q 0.30 TCGA-YC-A89H-01 6 111697011 111697011 C T REV3L Silent p.E849E 0.33 TCGA-YC-A89H-01 6 11190536 11190536 C T NEDD9 Silent p.Q522Q 0.28 TCGA-YC-A89H-01 6 11232746 11232746 C T NEDD9 Translation_Start_Site p.M1? 0.29 deleterious(0.01) benign(0.03) TCGA-YC-A89H-01 6 112430766 112430766 G C LAMA4 Silent p.R1782R 0.25 TCGA-YC-A89H-01 6 112451226 112451226 C T LAMA4 Missense_Mutation p.D1329N 0.28 deleterious(0.01) probably_damaging(1) TCGA-YC-A89H-01 6 112462655 112462655 G A LAMA4 Silent p.Y906Y 0.47 TCGA-YC-A89H-01 6 112476870 112476870 T G LAMA4 Missense_Mutation p.K619T 0.30 deleterious(0) possibly_damaging(0.754) TCGA-YC-A89H-01 6 114181750 114181750 G A MARCKS Missense_Mutation p.E332K 0.24 deleterious_low_confidence(0) unknown(0) TCGA-YC-A89H-01 6 116600543 116600543 C T TSPYL1 Missense_Mutation p.E151K 0.32 tolerated(1) benign(0.001) TCGA-YC-A89H-01 6 116833051 116833051 C T FAM26E Silent p.I64I 0.21 TCGA-YC-A89H-01 6 119252789 119252789 C T MCM9 Missense_Mutation p.E34K 0.26 tolerated(0.1) benign(0.304) TCGA-YC-A89H-01 6 119345382 119345382 C T FAM184A Silent p.L252L 0.38 TCGA-YC-A89H-01 6 127898619 127898619 C T C6orf58 Nonsense_Mutation p.Q97* 0.31 TCGA-YC-A89H-01 6 131602702 131602702 G A AKAP7 Missense_Mutation p.E295K 0.33 deleterious(0.01) possibly_damaging(0.589) TCGA-YC-A89H-01 6 132271286 132271286 C T CTGF Missense_Mutation p.D186N 0.26 tolerated(0.48) benign(0.142) TCGA-YC-A89H-01 6 133136205 133136205 G A RPS12 Missense_Mutation p.E37K 0.35 tolerated(0.16) benign(0.288) TCGA-YC-A89H-01 6 135518354 135518354 G A MYB Missense_Mutation p.A487T 0.31 tolerated(0.64) benign(0.004) TCGA-YC-A89H-01 6 136901523 136901523 G A MAP3K5 Missense_Mutation p.H1145Y 0.38 deleterious(0.03) possibly_damaging(0.67) TCGA-YC-A89H-01 6 143081525 143081525 G A HIVEP2 Missense_Mutation p.S1967L 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-YC-A89H-01 6 143095353 143095353 C T HIVEP2 Missense_Mutation p.E175K 0.31 deleterious(0.01) benign(0.119) TCGA-YC-A89H-01 6 143771787 143771787 C T ADAT2 Silent p.A3A 0.37 TCGA-YC-A89H-01 6 146207728 146207728 G A SHPRH 3'UTR 0.44 TCGA-YC-A89H-01 6 150211081 150211081 C T RAET1E Missense_Mutation p.E96K 0.45 deleterious(0.01) possibly_damaging(0.869) TCGA-YC-A89H-01 6 151243422 151243422 C T MTHFD1L Missense_Mutation p.L356F 0.35 tolerated(0.15) possibly_damaging(0.786) TCGA-YC-A89H-01 6 151247255 151247255 C T MTHFD1L Intron 0.27 TCGA-YC-A89H-01 6 151687977 151688000 TAGCTGAAGATGTCGGGCTGTATG - ZBTB2 In_Frame_Del p.I68_Y75del 0.10 TCGA-YC-A89H-01 6 152576763 152576763 A G SYNE1 Missense_Mutation p.L6408S 0.33 possibly_damaging(0.717) TCGA-YC-A89H-01 6 152675894 152675894 T C SYNE1 Missense_Mutation p.Q3609R 0.31 benign(0.034) TCGA-YC-A89H-01 6 152708425 152708425 C T SYNE1 Missense_Mutation p.E2757K 0.34 benign(0.297) TCGA-YC-A89H-01 6 155597357 155597357 C T CLDN20 Silent p.F168F 0.29 TCGA-YC-A89H-01 6 157527711 157527711 C T ARID1B Silent p.F1812F 0.35 TCGA-YC-A89H-01 6 159653542 159653542 C A FNDC1 Silent p.P666P 0.27 TCGA-YC-A89H-01 6 160113781 160113781 G A SOD2 Silent p.I46I 0.24 TCGA-YC-A89H-01 6 160557650 160557650 G A SLC22A1 Silent p.L343L 0.42 TCGA-YC-A89H-01 6 161016407 161016407 T A LPA Missense_Mutation p.T1150S 0.36 tolerated(0.68) benign(0.437) TCGA-YC-A89H-01 6 161455477 161455477 G A MAP3K4 Silent p.L113L 0.43 TCGA-YC-A89H-01 6 168226614 168226638 AGCACCACCCGTCCGGACCGAACCT - MLLT4 5'Flank 0.20 TCGA-YC-A89H-01 6 168307876 168307876 G A MLLT4 Missense_Mutation p.R559K 0.39 tolerated(0.15) benign(0.431) TCGA-YC-A89H-01 6 169067106 169067106 G C SMOC2 Missense_Mutation p.R454S 0.39 deleterious_low_confidence(0.01) benign(0.108) TCGA-YC-A89H-01 6 170103058 170103058 C T C6orf120 Missense_Mutation p.S168L 0.33 tolerated(0.3) benign(0.016) TCGA-YC-A89H-01 6 17601099 17601099 G C FAM8A1 Silent p.S153S 0.25 TCGA-YC-A89H-01 6 24714650 24714650 G A C6orf62 Nonsense_Mutation p.Q109* 0.37 TCGA-YC-A89H-01 6 25619860 25619860 C T LRRC16A 3'UTR 0.41 TCGA-YC-A89H-01 6 26056387 26056387 C T HIST1H1C Silent p.K90K 0.25 TCGA-YC-A89H-01 6 26234945 26234945 C T HIST1H1D Missense_Mutation p.D73N 0.42 tolerated(0.16) possibly_damaging(0.894) TCGA-YC-A89H-01 6 26384049 26384049 C T BTN2A2 5'UTR 0.23 TCGA-YC-A89H-01 6 26505385 26505385 C T BTN1A1 Silent p.I220I 0.36 TCGA-YC-A89H-01 6 27776269 27776269 C T HIST1H2AI Silent p.L94L 0.30 TCGA-YC-A89H-01 6 27799306 27799306 G A HIST1H4K 5'Flank 0.10 TCGA-YC-A89H-01 6 27806835 27806835 G A HIST1H2BN 3'UTR 0.42 TCGA-YC-A89H-01 6 27835208 27835208 C T HIST1H1B Missense_Mutation p.A34T 0.27 tolerated(0.17) unknown(0) TCGA-YC-A89H-01 6 27840937 27840937 G A HIST1H4L 3'UTR 0.25 TCGA-YC-A89H-01 6 27840939 27840939 G A HIST1H4L 3'UTR 0.35 TCGA-YC-A89H-01 6 27840950 27840950 G A HIST1H4L 3'UTR 0.33 TCGA-YC-A89H-01 6 29796388 29796388 G A HLA-G Missense_Mutation p.E138K 0.22 tolerated_low_confidence(0.29) possibly_damaging(0.51) TCGA-YC-A89H-01 6 30079479 30079479 C T TRIM31 Silent p.E153E 0.31 TCGA-YC-A89H-01 6 30313042 30313042 C T RPP21 Intron 0.32 TCGA-YC-A89H-01 6 30640529 30640529 C T DHX16 Silent p.L30L 0.38 TCGA-YC-A89H-01 6 30680683 30680683 G A MDC1 Missense_Mutation p.P346S 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-YC-A89H-01 6 30951718 30951718 C T MUC21 5'UTR 0.20 TCGA-YC-A89H-01 6 3119529 3119529 G A BPHL Intron 0.56 TCGA-YC-A89H-01 6 31544927 31544927 G A TNF Silent p.L105L 0.20 TCGA-YC-A89H-01 6 31701972 31701972 G A CLIC1 Silent p.L36L 0.39 TCGA-YC-A89H-01 6 31795755 31795755 G A HSPA1B Missense_Mutation p.D10N 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YC-A89H-01 6 31838778 31838778 G A SLC44A4 Silent p.L250L 0.24 TCGA-YC-A89H-01 6 31847893 31847893 C T EHMT2 Missense_Mutation p.E1201K 0.48 deleterious_low_confidence(0.01) unknown(0) TCGA-YC-A89H-01 6 32085408 32085408 G A ATF6B Silent p.F496F 0.31 TCGA-YC-A89H-01 6 32782094 32782094 C T HLA-DOB Intron 0.33 TCGA-YC-A89H-01 6 32821367 32821367 G A TAP1 Missense_Mutation p.P76L 0.17 tolerated_low_confidence(0.09) benign(0.039) TCGA-YC-A89H-01 6 32942542 32942542 G T BRD2 Silent p.P111P 0.36 TCGA-YC-A89H-01 6 33256780 33256780 C T WDR46 Missense_Mutation p.R27Q 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YC-A89H-01 6 33257556 33257556 G A PFDN6 5'UTR 0.29 TCGA-YC-A89H-01 6 33264465 33264465 G A RGL2 Missense_Mutation p.S110L 0.35 tolerated(0.3) benign(0.015) TCGA-YC-A89H-01 6 33281091 33281091 C T TAPBP Silent p.L124L 0.30 TCGA-YC-A89H-01 6 33561082 33561082 C T GGNBP1 3'Flank 0.38 TCGA-YC-A89H-01 6 33636807 33636807 C T ITPR3 Missense_Mutation p.S688L 0.34 tolerated(0.14) benign(0.002) TCGA-YC-A89H-01 6 34803068 34803068 C T UHRF1BP1 Intron 0.24 TCGA-YC-A89H-01 6 35051918 35051918 G A ANKS1A Silent p.E1005E 0.30 TCGA-YC-A89H-01 6 35471570 35471570 G A TULP1 Missense_Mutation p.R390C 0.35 deleterious(0) probably_damaging(0.977) TCGA-YC-A89H-01 6 36040737 36040737 C T MAPK14 Silent p.I131I 0.31 TCGA-YC-A89H-01 6 36569567 36569567 C T SRSF3 Missense_Mutation p.R155C 0.31 tolerated_low_confidence(0.12) unknown(0) TCGA-YC-A89H-01 6 36766253 36766253 C T CPNE5 Silent p.K102K 0.22 TCGA-YC-A89H-01 6 37140938 37140938 G A PIM1 Silent p.R258R 0.36 TCGA-YC-A89H-01 6 38670780 38670780 G A GLO1 Silent p.L17L 0.16 TCGA-YC-A89H-01 6 38957929 38957929 C T DNAH8 Missense_Mutation p.H4182Y 0.29 probably_damaging(0.998) TCGA-YC-A89H-01 6 39159318 39159318 G A KCNK5 Missense_Mutation p.T283I 0.23 tolerated(0.36) benign(0.013) TCGA-YC-A89H-01 6 4050045 4050045 A G PRPF4B Silent p.V702V 0.26 TCGA-YC-A89H-01 6 41908705 41908705 G A CCND3 Intron 0.20 TCGA-YC-A89H-01 6 42583760 42583760 C T UBR2 Nonsense_Mutation p.Q372* 0.27 TCGA-YC-A89H-01 6 42612220 42612220 C T UBR2 Nonsense_Mutation p.Q744* 0.26 TCGA-YC-A89H-01 6 42980059 42980059 G A MEA1 3'UTR 0.34 TCGA-YC-A89H-01 6 43019370 43019370 C G CUL7 Missense_Mutation p.E322Q 0.29 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 6 43109479 43109479 C T PTK7 Silent p.D572D 0.30 TCGA-YC-A89H-01 6 43113017 43113017 G A PTK7 Silent p.V837V 0.33 TCGA-YC-A89H-01 6 43143661 43143661 C T SRF Missense_Mutation p.S333F 0.41 deleterious(0.01) possibly_damaging(0.485) TCGA-YC-A89H-01 6 43172095 43172095 C T CUL9 Intron 0.38 TCGA-YC-A89H-01 6 43305090 43305090 A G ZNF318 Missense_Mutation p.S2216P 0.27 possibly_damaging(0.897) TCGA-YC-A89H-01 6 43323460 43323460 G C ZNF318 Missense_Mutation p.L538V 0.31 probably_damaging(0.999) TCGA-YC-A89H-01 6 43477475 43477475 C T LRRC73 Missense_Mutation p.E17K 0.38 deleterious(0.01) probably_damaging(0.913) TCGA-YC-A89H-01 6 43492599 43492599 G A XPO5 Silent p.V1094V 0.33 TCGA-YC-A89H-01 6 43543613 43543613 C T XPO5 5'UTR 0.36 TCGA-YC-A89H-01 6 44272540 44272540 C T AARS2 Missense_Mutation p.E532K 0.19 tolerated(0.59) benign(0.381) TCGA-YC-A89H-01 6 44275071 44275071 T C AARS2 Missense_Mutation p.T319A 0.42 deleterious(0.01) benign(0.122) TCGA-YC-A89H-01 6 46108093 46108093 C T ENPP4 Missense_Mutation p.S258L 0.20 deleterious(0.01) benign(0.043) TCGA-YC-A89H-01 6 46982501 46982501 T A GPR110 Silent p.G281G 0.20 TCGA-YC-A89H-01 6 47200620 47200620 C T TNFRSF21 Missense_Mutation p.E617K 0.35 deleterious(0.04) benign(0.287) TCGA-YC-A89H-01 6 49574860 49574860 G A RHAG Intron 0.24 TCGA-YC-A89H-01 6 51889478 51889478 C A PKHD1 Silent p.P1710P 0.31 TCGA-YC-A89H-01 6 53516997 53516997 G A KLHL31 Missense_Mutation p.S435L 0.17 deleterious(0) possibly_damaging(0.852) TCGA-YC-A89H-01 6 54216183 54216183 G T TINAG Nonsense_Mutation p.G372* 0.08 TCGA-YC-A89H-01 6 54805684 54805684 T C FAM83B Missense_Mutation p.Y639H 0.48 tolerated(0.07) benign(0.02) TCGA-YC-A89H-01 6 56394438 56394438 C T DST Nonsense_Mutation p.W3178* 0.26 TCGA-YC-A89H-01 6 64356481 64356481 C T PHF3 Missense_Mutation p.H9Y 0.30 deleterious(0.03) benign(0.302) TCGA-YC-A89H-01 6 64356568 64356568 C T PHF3 Nonsense_Mutation p.Q38* 0.30 TCGA-YC-A89H-01 6 71567786 71567786 G A SMAP1 Missense_Mutation p.G375R 0.40 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 6 73787053 73787053 G T KCNQ5 Missense_Mutation p.V209F 0.30 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 6 73900375 73900375 T C KCNQ5 Missense_Mutation p.Y572H 0.38 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 6 73902338 73902338 G A KCNQ5 Missense_Mutation p.R606Q 0.34 deleterious(0) probably_damaging(0.995) TCGA-YC-A89H-01 6 74229113 74229113 C T EEF1A1 Missense_Mutation p.D91N 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.847) TCGA-YC-A89H-01 6 82936946 82936946 C T IBTK Missense_Mutation p.G206E 0.39 deleterious(0) probably_damaging(0.983) TCGA-YC-A89H-01 6 83767592 83767592 C T UBE3D Missense_Mutation p.G76E 0.21 tolerated(0.08) possibly_damaging(0.557) TCGA-YC-A89H-01 6 84629128 84629128 C T CYB5R4 Silent p.F173F 0.14 TCGA-YC-A89H-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.49 deleterious(0) possibly_damaging(0.79) TCGA-YC-A89H-01 6 90340548 90340549 - T ANKRD6 Frame_Shift_Ins p.E673* 0.37 TCGA-YC-A89H-01 6 90529346 90529346 G A MDN1 5'UTR 0.33 TCGA-YC-A89H-01 6 90572569 90572569 C T CASP8AP2 RNA 0.15 TCGA-YC-A89H-01 6 97681842 97681842 T G MMS22L Missense_Mutation p.E399D 0.34 deleterious(0) probably_damaging(0.987) TCGA-YC-A89H-01 6 97730221 97730221 C T MMS22L Missense_Mutation p.E45K 0.40 tolerated(0.16) probably_damaging(0.991) TCGA-YC-A89H-01 6 99853980 99853980 C T PNISR Missense_Mutation p.R310K 0.28 tolerated(0.12) benign(0.444) TCGA-YC-A89H-01 7 100210377 100210377 G A MOSPD3 5'UTR 0.53 TCGA-YC-A89H-01 7 100490837 100490837 G A ACHE Silent p.L339L 0.35 TCGA-YC-A89H-01 7 100730644 100730644 C T TRIM56 Silent p.D17D 0.36 TCGA-YC-A89H-01 7 1026366 1026366 G A CYP2W1 Missense_Mutation p.R251Q 0.40 tolerated(0.17) benign(0.015) TCGA-YC-A89H-01 7 102978215 102978215 T C DNAJC2 Missense_Mutation p.Y100C 0.07 deleterious(0.04) possibly_damaging(0.566) TCGA-YC-A89H-01 7 106841891 106841891 G A HBP1 3'UTR 0.32 TCGA-YC-A89H-01 7 107531643 107531643 G A DLD 5'UTR 0.40 TCGA-YC-A89H-01 7 107689845 107689845 T C LAMB4 Missense_Mutation p.T1350A 0.31 tolerated(0.54) benign(0.001) TCGA-YC-A89H-01 7 108119764 108119772 AAGACATTT - PNPLA8 In_Frame_Del p.K644_L646del 0.32 TCGA-YC-A89H-01 7 1098167 1098167 C T GPR146 3'UTR 0.27 TCGA-YC-A89H-01 7 1098190 1098190 G A GPR146 3'UTR 0.62 TCGA-YC-A89H-01 7 112724393 112724393 G A GPR85 Silent p.F128F 0.42 TCGA-YC-A89H-01 7 116339690 116339690 C T MET Silent p.V184V 0.31 TCGA-YC-A89H-01 7 117007443 117007443 C G ASZ1 Missense_Mutation p.S413T 0.20 tolerated(0.18) benign(0.044) TCGA-YC-A89H-01 7 120382636 120382636 C T KCND2 Missense_Mutation p.H483Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-YC-A89H-01 7 120382657 120382657 G C KCND2 Splice_Site p.X489_splice 0.24 TCGA-YC-A89H-01 7 120591197 120591197 G A ING3 Intron 0.38 TCGA-YC-A89H-01 7 120969787 120969787 G A WNT16 Missense_Mutation p.E88K 0.25 tolerated(0.1) probably_damaging(0.996) TCGA-YC-A89H-01 7 120990414 120990414 G A FAM3C 3'UTR 0.18 TCGA-YC-A89H-01 7 123149953 123149953 A T IQUB Splice_Site p.X178_splice 0.33 TCGA-YC-A89H-01 7 12683870 12683870 G A SCIN Silent p.E563E 0.19 TCGA-YC-A89H-01 7 127222266 127222266 G A GCC1 Silent p.I710I 0.36 TCGA-YC-A89H-01 7 128034403 128034403 G T IMPDH1 Nonsense_Mutation p.Y569* 0.22 TCGA-YC-A89H-01 7 128658015 128658015 G A TNPO3 Missense_Mutation p.T106M 0.28 deleterious(0) probably_damaging(0.992) TCGA-YC-A89H-01 7 131151160 131151160 C T MKLN1 Silent p.L638L 0.29 TCGA-YC-A89H-01 7 133827894 133827894 C G LRGUK Missense_Mutation p.F189L 0.19 deleterious(0.01) possibly_damaging(0.878) TCGA-YC-A89H-01 7 134889029 134889029 G A WDR91 Silent p.F294F 0.38 TCGA-YC-A89H-01 7 135330220 135330220 C T NUP205 Silent p.I1896I 0.29 TCGA-YC-A89H-01 7 138145524 138145524 C T TRIM24 Silent p.F77F 0.35 TCGA-YC-A89H-01 7 140373454 140373454 G A ADCK2 Silent p.V108V 0.35 TCGA-YC-A89H-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.25 deleterious(0.01) possibly_damaging(0.773) TCGA-YC-A89H-01 7 142960614 142960614 C T GSTK1 Missense_Mutation p.P3L 0.34 tolerated(0.09) benign(0.085) TCGA-YC-A89H-01 7 142997025 142997025 G A CASP2 Missense_Mutation p.E253K 0.27 tolerated(0.26) benign(0.014) TCGA-YC-A89H-01 7 143096811 143096811 C T EPHA1 Silent p.L256L 0.13 TCGA-YC-A89H-01 7 143701297 143701297 G A OR6B1 Missense_Mutation p.E70K 0.27 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 7 146829579 146829579 G A CNTNAP2 Missense_Mutation p.M442I 0.35 tolerated(0.15) benign(0.008) TCGA-YC-A89H-01 7 150501513 150501513 C T TMEM176A Silent p.L207L 0.21 TCGA-YC-A89H-01 7 1516545 1516545 G A INTS1 Nonsense_Mutation p.Q1650* 0.40 TCGA-YC-A89H-01 7 151873855 151873855 G A KMT2C Nonsense_Mutation p.Q2895* 0.31 TCGA-YC-A89H-01 7 152009018 152009018 G A KMT2C Nonsense_Mutation p.Q202* 0.40 TCGA-YC-A89H-01 7 154684354 154684354 G A DPP6 3'UTR 0.50 TCGA-YC-A89H-01 7 156451171 156451171 G T RNF32 Missense_Mutation p.W197C 0.40 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 7 157046801 157046801 G A UBE3C Missense_Mutation p.E950K 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-YC-A89H-01 7 158449047 158449047 C T NCAPG2 Missense_Mutation p.E765K 0.26 deleterious(0) probably_damaging(0.989) TCGA-YC-A89H-01 7 158457292 158457292 C T NCAPG2 Missense_Mutation p.V544M 0.33 deleterious(0) benign(0.14) TCGA-YC-A89H-01 7 20449356 20449356 T A ITGB8 Missense_Mutation p.N714K 0.36 tolerated(0.44) benign(0.075) TCGA-YC-A89H-01 7 23221674 23221674 G A NUPL2 5'UTR 0.26 TCGA-YC-A89H-01 7 23286337 23286337 G A GPNMB 5'UTR 0.38 TCGA-YC-A89H-01 7 23309691 23309691 G A GPNMB Silent p.V454V 0.42 TCGA-YC-A89H-01 7 24727255 24727255 G A MPP6 3'UTR 0.41 TCGA-YC-A89H-01 7 24758713 24758713 C T DFNA5 Missense_Mutation p.E177K 0.32 tolerated(0.07) possibly_damaging(0.87) TCGA-YC-A89H-01 7 26236058 26236058 G A HNRNPA2B1 Silent p.F219F 0.24 TCGA-YC-A89H-01 7 26251321 26251321 G A CBX3 Missense_Mutation p.E124K 0.31 deleterious(0.02) benign(0.198) TCGA-YC-A89H-01 7 26904128 26904128 G A SKAP2 5'UTR 0.23 TCGA-YC-A89H-01 7 27182779 27182779 C T HOXA5 Missense_Mutation p.E150K 0.37 tolerated(0.19) benign(0.121) TCGA-YC-A89H-01 7 27194647 27194647 C T HOXA7 Missense_Mutation p.E192K 0.35 tolerated(0.37) unknown(0) TCGA-YC-A89H-01 7 27195849 27195849 C T HOXA7 Missense_Mutation p.E106K 0.44 tolerated(0.73) benign(0.015) TCGA-YC-A89H-01 7 27211649 27211649 C T HOXA10 Missense_Mutation p.E368K 0.35 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 7 2770717 2770717 G A GNA12 3'UTR 0.21 TCGA-YC-A89H-01 7 30329483 30329483 C T ZNRF2 Intron 0.16 TCGA-YC-A89H-01 7 30818144 30818144 G A FAM188B Missense_Mutation p.E54K 0.34 deleterious(0.03) possibly_damaging(0.589) TCGA-YC-A89H-01 7 32909696 32909696 C A KBTBD2 Missense_Mutation p.C378F 0.20 deleterious(0.01) possibly_damaging(0.908) TCGA-YC-A89H-01 7 33545228 33545228 C T BBS9 Silent p.L757L 0.44 TCGA-YC-A89H-01 7 36660395 36660395 C T AOAH Missense_Mutation p.G232S 0.29 deleterious(0.01) probably_damaging(1) TCGA-YC-A89H-01 7 37960245 37960245 G A EPDR1 5'UTR 0.41 TCGA-YC-A89H-01 7 38908784 38908784 G A VPS41 Nonsense_Mutation p.Q44* 0.42 TCGA-YC-A89H-01 7 43531715 43531715 C A HECW1 Silent p.A1092A 0.53 TCGA-YC-A89H-01 7 43663315 43663315 G A STK17A Missense_Mutation p.G250R 0.30 deleterious(0.05) probably_damaging(0.97) TCGA-YC-A89H-01 7 44804047 44804047 C T ZMIZ2 Silent p.L630L 0.38 TCGA-YC-A89H-01 7 44839457 44839457 A G PPIA Missense_Mutation p.T116A 0.27 tolerated_low_confidence(0.07) benign(0.064) TCGA-YC-A89H-01 7 47835722 47835722 G T PKD1L1 Silent p.P2740P 0.18 TCGA-YC-A89H-01 7 51095733 51095733 G C COBL Missense_Mutation p.D1020E 0.33 tolerated(1) benign(0.004) TCGA-YC-A89H-01 7 55241709 55241709 C A EGFR Silent p.G719G 0.29 TCGA-YC-A89H-01 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.29 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-YC-A89H-01 7 5568250 5568250 G A ACTB Missense_Mutation p.S155F 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-YC-A89H-01 7 62752833 62752833 T A ZNF733P RNA 0.26 TCGA-YC-A89H-01 7 65220870 65220870 A G SNORA22 3'Flank 0.22 TCGA-YC-A89H-01 7 72744265 72744265 G A FKBP6 Silent p.L126L 0.27 TCGA-YC-A89H-01 7 73279364 73279364 C T WBSCR28 Silent p.L38L 0.30 TCGA-YC-A89H-01 7 73474745 73474745 G A ELN Missense_Mutation p.G554E 0.41 unknown(0) TCGA-YC-A89H-01 7 76631575 76631575 C T UPK3B Intron 0.46 TCGA-YC-A89H-01 7 76828874 76828874 G A FGL2 Silent p.F79F 0.33 TCGA-YC-A89H-01 7 80433494 80433494 G A SEMA3C Silent p.F243F 0.46 TCGA-YC-A89H-01 7 86544050 86544050 G A KIAA1324L Nonsense_Mutation p.Q574* 0.38 TCGA-YC-A89H-01 7 86568139 86568139 C T KIAA1324L Missense_Mutation p.D329N 0.15 tolerated(0.13) benign(0.049) TCGA-YC-A89H-01 7 86568175 86568175 C T KIAA1324L Missense_Mutation p.E317K 0.31 tolerated(0.51) benign(0.138) TCGA-YC-A89H-01 7 86802916 86802916 C G DMTF1 Missense_Mutation p.S131R 0.23 deleterious(0.02) possibly_damaging(0.459) TCGA-YC-A89H-01 7 90042366 90042366 C T CLDN12 Silent p.L126L 0.34 TCGA-YC-A89H-01 7 90225890 90225890 G A AC002456.2 5'Flank 0.62 TCGA-YC-A89H-01 7 91674438 91674438 C A AKAP9 Missense_Mutation p.S1760Y 0.25 probably_damaging(0.991) TCGA-YC-A89H-01 7 91706208 91706208 G A AKAP9 Missense_Mutation p.E2218K 0.21 probably_damaging(0.999) TCGA-YC-A89H-01 7 91726366 91726366 G A AKAP9 Missense_Mutation p.E3365K 0.29 probably_damaging(0.997) TCGA-YC-A89H-01 7 92732755 92732755 T C SAMD9 Missense_Mutation p.M886V 0.31 deleterious(0) probably_damaging(0.97) TCGA-YC-A89H-01 7 93519470 93519470 C T TFPI2 Missense_Mutation p.D84N 0.18 tolerated(0.14) benign(0) TCGA-YC-A89H-01 7 944709 944709 G A ADAP1 Silent p.F163F 0.51 TCGA-YC-A89H-01 7 94876817 94876817 G C PPP1R9A Missense_Mutation p.E715D 0.23 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 7 94913491 94913491 C T PPP1R9A Missense_Mutation p.S1153F 0.31 deleterious(0) possibly_damaging(0.753) TCGA-YC-A89H-01 7 97820182 97820182 G A LMTK2 Missense_Mutation p.D381N 0.32 deleterious(0) probably_damaging(0.984) TCGA-YC-A89H-01 7 97937096 97937096 C T BAIAP2L1 Silent p.K356K 0.25 TCGA-YC-A89H-01 7 99015155 99015155 G A BUD31 Silent p.Q107Q 0.34 TCGA-YC-A89H-01 7 99051661 99051661 C T CPSF4 Nonsense_Mutation p.Q215* 0.25 TCGA-YC-A89H-01 7 99054117 99054117 A G CPSF4 Silent p.G268G 0.16 TCGA-YC-A89H-01 7 99361574 99361574 C T CYP3A4 Silent p.T310T 0.46 TCGA-YC-A89H-01 7 99690503 99690503 G A MCM7 3'UTR 0.27 TCGA-YC-A89H-01 7 99697253 99697253 C T MCM7 Missense_Mutation p.D79N 0.25 tolerated(0.14) benign(0.079) TCGA-YC-A89H-01 7 99697266 99697266 C T MCM7 Silent p.A74A 0.26 TCGA-YC-A89H-01 7 99699300 99699300 G A AP4M1 5'UTR 0.40 TCGA-YC-A89H-01 8 101724668 101724668 C T PABPC1 Silent p.V298V 0.64 TCGA-YC-A89H-01 8 101961069 101961069 C T YWHAZ Missense_Mutation p.E17K 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.616) TCGA-YC-A89H-01 8 103308007 103308007 G A UBR5 Silent p.L1223L 0.18 TCGA-YC-A89H-01 8 103664148 103664148 C T KLF10 Missense_Mutation p.E138K 0.69 tolerated(0.31) benign(0.113) TCGA-YC-A89H-01 8 104427076 104427076 C T SLC25A32 Silent p.V30V 0.15 TCGA-YC-A89H-01 8 104513169 104513169 C T RIMS2 Nonsense_Mutation p.Q19* 0.14 TCGA-YC-A89H-01 8 110592064 110592064 C T SYBU Missense_Mutation p.G233D 0.66 deleterious(0.05) probably_damaging(0.995) TCGA-YC-A89H-01 8 110598324 110598324 C T SYBU Silent p.S165S 0.39 TCGA-YC-A89H-01 8 113267578 113267578 G A CSMD3 Missense_Mutation p.S3314L 0.09 tolerated(0.33) benign(0.229) TCGA-YC-A89H-01 8 117862927 117862927 G T RAD21 Missense_Mutation p.P517Q 0.26 tolerated(0.18) benign(0.002) TCGA-YC-A89H-01 8 118533223 118533223 C T MED30 Silent p.I36I 0.63 TCGA-YC-A89H-01 8 121210082 121210082 G A COL14A1 Missense_Mutation p.E209K 0.16 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 8 122627209 122627209 C T HAS2 Missense_Mutation p.E267K 0.16 deleterious(0.04) probably_damaging(1) TCGA-YC-A89H-01 8 124705482 124705482 C T ANXA13 Silent p.K240K 0.16 TCGA-YC-A89H-01 8 124796777 124796777 G A FAM91A1 Silent p.K257K 0.54 TCGA-YC-A89H-01 8 13251155 13251155 A C DLC1 Missense_Mutation p.N407K 0.45 tolerated_low_confidence(0.13) benign(0.002) TCGA-YC-A89H-01 8 144589999 144589999 C T ZC3H3 Silent p.K544K 0.14 TCGA-YC-A89H-01 8 144657456 144657456 C T NAPRT1 Missense_Mutation p.E451K 0.54 tolerated(0.56) benign(0.06) TCGA-YC-A89H-01 8 144680434 144680434 G A TIGD5 Missense_Mutation p.E121K 0.16 deleterious(0.05) possibly_damaging(0.727) TCGA-YC-A89H-01 8 144803976 144803976 C T MAPK15 Nonsense_Mutation p.Q462* 0.56 TCGA-YC-A89H-01 8 144892959 144892959 G A SCRIB Missense_Mutation p.S434L 0.12 benign(0.245) TCGA-YC-A89H-01 8 144895510 144895510 C T SCRIB Missense_Mutation p.D180N 0.13 probably_damaging(0.999) TCGA-YC-A89H-01 8 144895693 144895693 G A SCRIB Silent p.L150L 0.65 TCGA-YC-A89H-01 8 144993828 144993828 G A PLEC Silent p.L3524L 0.73 TCGA-YC-A89H-01 8 145009097 145009097 C T PLEC Missense_Mutation p.E413K 0.13 unknown(0) TCGA-YC-A89H-01 8 145012841 145012841 C T PLEC Silent p.Q181Q 0.17 TCGA-YC-A89H-01 8 145018067 145018067 C T PLEC Intron 0.26 TCGA-YC-A89H-01 8 145698063 145698063 C T KIFC2 Missense_Mutation p.S612F 0.17 deleterious(0) benign(0.412) TCGA-YC-A89H-01 8 146067786 146067786 C T ZNF7 Nonsense_Mutation p.Q432* 0.58 TCGA-YC-A89H-01 8 17579389 17579389 G A MTUS1 Intron 0.29 TCGA-YC-A89H-01 8 19190609 19190609 G A SH2D4A Missense_Mutation p.E109K 0.36 tolerated(0.06) possibly_damaging(0.484) TCGA-YC-A89H-01 8 27516666 27516666 G A SCARA3 Missense_Mutation p.D327N 0.59 deleterious(0) probably_damaging(0.998) TCGA-YC-A89H-01 8 30546775 30546775 C T GSR Missense_Mutation p.G315D 0.47 tolerated(0.18) benign(0.041) TCGA-YC-A89H-01 8 30553915 30553915 C T GSR Silent p.L259L 0.37 TCGA-YC-A89H-01 8 38107308 38107308 G A DDHD2 Missense_Mutation p.R444K 0.25 tolerated(0.58) benign(0.012) TCGA-YC-A89H-01 8 38853784 38853784 C G TM2D2 Missense_Mutation p.A59P 0.47 tolerated_low_confidence(0.29) benign(0) TCGA-YC-A89H-01 8 38899470 38899470 C T ADAM9 Missense_Mutation p.S379F 0.47 deleterious(0) probably_damaging(0.987) TCGA-YC-A89H-01 8 41469470 41469470 C T AGPAT6 Silent p.I220I 0.38 TCGA-YC-A89H-01 8 41472504 41472504 G A AGPAT6 Silent p.S330S 0.23 TCGA-YC-A89H-01 8 41547787 41547787 G A ANK1 Silent p.H1395H 0.37 TCGA-YC-A89H-01 8 42611429 42611429 C T CHRNA6 Missense_Mutation p.E305K 0.16 tolerated(0.39) benign(0.122) TCGA-YC-A89H-01 8 48719764 48719764 G A PRKDC Silent p.I3226I 0.42 TCGA-YC-A89H-01 8 49832928 49832928 C T SNAI2 Missense_Mutation p.G51E 0.33 tolerated(0.94) benign(0.046) TCGA-YC-A89H-01 8 54708384 54708384 C T ATP6V1H Silent p.L231L 0.37 TCGA-YC-A89H-01 8 56986287 56986287 G A RPS20 Silent p.L48L 0.22 TCGA-YC-A89H-01 8 62588762 62588762 T C ASPH Intron 0.52 TCGA-YC-A89H-01 8 62595012 62595012 G A ASPH Intron 0.60 TCGA-YC-A89H-01 8 67012278 67012278 C T DNAJC5B 3'UTR 0.79 TCGA-YC-A89H-01 8 68189636 68189636 C T ARFGEF1 Missense_Mutation p.E362K 0.65 tolerated(0.24) benign(0.015) TCGA-YC-A89H-01 8 69104646 69104646 C T PREX2 Missense_Mutation p.A1497V 0.16 deleterious_low_confidence(0) benign(0.129) TCGA-YC-A89H-01 8 73850364 73850364 A C KCNB2 3'UTR 0.21 TCGA-YC-A89H-01 8 87155142 87155142 C T ATP6V0D2 Missense_Mutation p.H200Y 0.18 tolerated(0.21) benign(0.106) TCGA-YC-A89H-01 8 87242558 87242558 C T SLC7A13 5'UTR 0.60 TCGA-YC-A89H-01 8 87486473 87486473 A G RMDN1 3'UTR 0.59 TCGA-YC-A89H-01 8 8750331 8750331 C T MFHAS1 Missense_Mutation p.E80K 0.56 tolerated(0.1) benign(0.01) TCGA-YC-A89H-01 8 87679285 87679285 G A CNGB3 Silent p.L240L 0.18 TCGA-YC-A89H-01 8 90796353 90796353 C T RIPK2 Missense_Mutation p.H339Y 0.51 tolerated(0.5) benign(0.002) TCGA-YC-A89H-01 8 95895029 95895029 T G CCNE2 Missense_Mutation p.E308A 0.13 deleterious(0) possibly_damaging(0.498) TCGA-YC-A89H-01 8 9623931 9623931 C T TNKS Missense_Mutation p.H1246Y 0.55 tolerated(0.25) benign(0.362) TCGA-YC-A89H-01 8 97172877 97172877 C G GDF6 Missense_Mutation p.S15T 0.59 tolerated(0.51) benign(0.002) TCGA-YC-A89H-01 8 98787980 98787980 C T LAPTM4B Missense_Mutation p.R6W 0.71 deleterious_low_confidence(0) benign(0) TCGA-YC-A89H-01 8 99963021 99963021 C T OSR2 Intron 0.33 TCGA-YC-A89H-01 8 99963820 99963820 C G OSR2 Missense_Mutation p.T277S 0.14 tolerated(0.08) possibly_damaging(0.549) TCGA-YC-A89H-01 9 100616545 100616545 G A FOXE1 Missense_Mutation p.E117K 0.36 deleterious(0) probably_damaging(0.955) TCGA-YC-A89H-01 9 100965602 100965602 C T TBC1D2 Missense_Mutation p.D747N 0.35 deleterious(0.03) possibly_damaging(0.7) TCGA-YC-A89H-01 9 103212932 103212932 C T MSANTD3 Missense_Mutation p.S171L 0.31 deleterious_low_confidence(0) benign(0.013) TCGA-YC-A89H-01 9 104335660 104335660 G C GRIN3A Silent p.L1048L 0.27 TCGA-YC-A89H-01 9 104341568 104341568 C T GRIN3A Silent p.L947L 0.39 TCGA-YC-A89H-01 9 1057043 1057043 G A DMRT2 Missense_Mutation p.E486K 0.32 deleterious_low_confidence(0) possibly_damaging(0.524) TCGA-YC-A89H-01 9 109690814 109690814 A G ZNF462 Missense_Mutation p.I1541V 0.27 benign(0.008) TCGA-YC-A89H-01 9 114195568 114195568 C T KIAA0368 Missense_Mutation p.D443N 0.33 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 9 114685159 114685159 G A UGCG Missense_Mutation p.D91N 0.21 tolerated(0.55) benign(0.028) TCGA-YC-A89H-01 9 114997171 114997171 G C PTBP3 Missense_Mutation p.P304R 0.33 deleterious(0.03) benign(0.421) TCGA-YC-A89H-01 9 116080796 116080796 G A WDR31 Missense_Mutation p.S301L 0.32 deleterious(0) possibly_damaging(0.745) TCGA-YC-A89H-01 9 117143360 117143360 G A AKNA Missense_Mutation p.S85L 0.27 tolerated(0.1) benign(0.272) TCGA-YC-A89H-01 9 117186785 117186785 C T DFNB31 Silent p.L415L 0.50 TCGA-YC-A89H-01 9 117266652 117266652 G A DFNB31 Missense_Mutation p.R144W 0.11 deleterious(0) probably_damaging(0.978) TCGA-YC-A89H-01 9 118147 118147 G A FOXD4 5'UTR 0.39 TCGA-YC-A89H-01 9 125673142 125673142 C G ZBTB6 Missense_Mutation p.V404L 0.30 tolerated(0.56) benign(0.01) TCGA-YC-A89H-01 9 127495624 127495624 G A NR6A1 Silent p.F35F 0.33 TCGA-YC-A89H-01 9 128003012 128003012 G A HSPA5 Silent p.I99I 0.27 TCGA-YC-A89H-01 9 128206794 128206794 C T MAPKAP1 Missense_Mutation p.E477K 0.23 deleterious(0) probably_damaging(0.928) TCGA-YC-A89H-01 9 130080367 130080367 A G GARNL3 Missense_Mutation p.Y155C 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-YC-A89H-01 9 130127640 130127640 A G GARNL3 Missense_Mutation p.Y719C 0.30 deleterious(0) possibly_damaging(0.903) TCGA-YC-A89H-01 9 130187053 130187053 G A ZNF79 5'UTR 0.53 TCGA-YC-A89H-01 9 130213631 130213631 C T RPL12 5'UTR 0.27 TCGA-YC-A89H-01 9 130341223 130341223 G A FAM129B 5'UTR 0.25 TCGA-YC-A89H-01 9 130550495 130550495 C T CDK9 Silent p.I145I 0.37 TCGA-YC-A89H-01 9 131186439 131186439 T C CERCAM Missense_Mutation p.L150P 0.33 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 9 131394539 131394539 G A SPTAN1 Nonsense_Mutation p.W2299* 0.34 TCGA-YC-A89H-01 9 131396130 131396130 C T WDR34 Missense_Mutation p.D502N 0.24 tolerated(0.14) possibly_damaging(0.828) TCGA-YC-A89H-01 9 131711513 131711513 G A RP11-101E3.5 Silent p.L47L 0.19 TCGA-YC-A89H-01 9 131735514 131735514 C T NUP188 Silent p.L397L 0.26 TCGA-YC-A89H-01 9 131860584 131860584 C A CRAT Silent p.S424S 0.38 TCGA-YC-A89H-01 9 131865330 131865330 G A CRAT Silent p.L142L 0.32 TCGA-YC-A89H-01 9 132630529 132630529 G A USP20 Silent p.L312L 0.30 TCGA-YC-A89H-01 9 135042197 135042197 C T NTNG2 5'UTR 0.32 TCGA-YC-A89H-01 9 135501078 135501078 A G DDX31 Silent p.C667C 0.32 TCGA-YC-A89H-01 9 135546261 135546261 C T GTF3C4 Silent p.I92I 0.55 TCGA-YC-A89H-01 9 135702433 135702433 G A AK8 Missense_Mutation p.H189Y 0.38 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 9 135772671 135772671 C T TSC1 Missense_Mutation p.E959K 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-YC-A89H-01 9 135776186 135776186 G A TSC1 Silent p.F847F 0.31 TCGA-YC-A89H-01 9 135782704 135782704 C T TSC1 Silent p.L439L 0.20 TCGA-YC-A89H-01 9 136555548 136555548 C G SARDH Missense_Mutation p.D675H 0.27 deleterious(0) probably_damaging(0.996) TCGA-YC-A89H-01 9 137293515 137293515 G A RXRA Silent p.P22P 0.36 TCGA-YC-A89H-01 9 138742249 138742249 C T CAMSAP1 Silent p.L289L 0.32 TCGA-YC-A89H-01 9 139379227 139379227 C T C9orf163 Silent p.F109F 0.60 TCGA-YC-A89H-01 9 139395238 139395238 G A NOTCH1 Silent p.S1900S 0.25 TCGA-YC-A89H-01 9 139565106 139565106 C T EGFL7 Intron 0.56 TCGA-YC-A89H-01 9 139620364 139620364 G A FAM69B 3'Flank 0.33 TCGA-YC-A89H-01 9 139621205 139621205 G A FAM69B 3'Flank 0.27 TCGA-YC-A89H-01 9 139699052 139699052 G A CCDC183 Silent p.T255T 0.34 TCGA-YC-A89H-01 9 139793378 139793378 C T TRAF2 Silent p.L62L 0.29 TCGA-YC-A89H-01 9 139837915 139837915 C T FBXW5 Silent p.T79T 0.26 TCGA-YC-A89H-01 9 139907259 139907259 C T ABCA2 Silent p.Q1662Q 0.30 TCGA-YC-A89H-01 9 140001151 140001151 G A MAN1B1 Missense_Mutation p.D486N 0.42 deleterious(0.01) probably_damaging(0.99) TCGA-YC-A89H-01 9 140150389 140150389 C T NELFB Nonsense_Mutation p.Q45* 0.35 TCGA-YC-A89H-01 9 140459475 140459475 C T DPH7 Intron 0.27 TCGA-YC-A89H-01 9 140477015 140477015 C T ZMYND19 Missense_Mutation p.E222K 0.23 deleterious(0.03) benign(0.142) TCGA-YC-A89H-01 9 14812864 14812864 C T FREM1 Missense_Mutation p.D947N 0.26 tolerated(0.08) benign(0.036) TCGA-YC-A89H-01 9 15177782 15177782 C T TTC39B Missense_Mutation p.C585Y 0.39 deleterious(0) possibly_damaging(0.628) TCGA-YC-A89H-01 9 15468955 15468955 T G PSIP1 Missense_Mutation p.K402N 0.24 deleterious(0) probably_damaging(0.997) TCGA-YC-A89H-01 9 15468990 15468990 G A PSIP1 Nonsense_Mutation p.Q391* 0.28 TCGA-YC-A89H-01 9 17273758 17273758 A G CNTLN Missense_Mutation p.R293G 0.25 deleterious(0.02) possibly_damaging(0.479) TCGA-YC-A89H-01 9 19087094 19087094 T C HAUS6 Missense_Mutation p.I215M 0.41 tolerated(0.18) benign(0.067) TCGA-YC-A89H-01 9 21029378 21029378 G C PTPLAD2 Missense_Mutation p.L20V 0.25 deleterious(0) possibly_damaging(0.46) TCGA-YC-A89H-01 9 21385184 21385184 G A IFNA2 Missense_Mutation p.L49F 0.26 deleterious(0.01) possibly_damaging(0.65) TCGA-YC-A89H-01 9 21481504 21481504 G C IFNE Missense_Mutation p.Q64E 0.37 tolerated(0.08) benign(0.037) TCGA-YC-A89H-01 9 21974684 21974684 G A CDKN2A Missense_Mutation p.P48L 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-YC-A89H-01 9 32632499 32632499 G A TAF1L Missense_Mutation p.R1027C 0.28 deleterious(0) probably_damaging(0.953) TCGA-YC-A89H-01 9 32633738 32633738 C T TAF1L Missense_Mutation p.A614T 0.30 deleterious(0.04) probably_damaging(0.973) TCGA-YC-A89H-01 9 3275598 3275598 G C RFX3 Missense_Mutation p.L330V 0.46 tolerated(0.09) benign(0.411) TCGA-YC-A89H-01 9 33030597 33030597 G T DNAJA1 Missense_Mutation p.R192I 0.39 deleterious(0.02) possibly_damaging(0.585) TCGA-YC-A89H-01 9 33076654 33076654 C T SMU1 5'UTR 0.35 TCGA-YC-A89H-01 9 3346692 3346692 C T RFX3 Missense_Mutation p.D64N 0.25 deleterious(0.05) benign(0.052) TCGA-YC-A89H-01 9 34093416 34093416 C T DCAF12 Missense_Mutation p.E298K 0.37 deleterious(0.01) possibly_damaging(0.867) TCGA-YC-A89H-01 9 34271821 34271821 C T KIF24 Silent p.K441K 0.57 TCGA-YC-A89H-01 9 34611090 34611090 G A RPP25L Silent p.V68V 0.29 TCGA-YC-A89H-01 9 35376139 35376139 G A UNC13B Missense_Mutation p.E495K 0.28 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 9 35563055 35563055 G A FAM166B Silent p.F103F 0.41 TCGA-YC-A89H-01 9 35662178 35662178 G A ARHGEF39 Silent p.I330I 0.55 TCGA-YC-A89H-01 9 35706192 35706192 C T TLN1 Splice_Site p.X1787_splice 0.35 TCGA-YC-A89H-01 9 35732755 35732755 C T CREB3 5'UTR 0.33 TCGA-YC-A89H-01 9 35811823 35811823 T C SPAG8 Missense_Mutation p.T74A 0.27 tolerated_low_confidence(0.42) unknown(0) TCGA-YC-A89H-01 9 37495923 37495923 C T POLR1E Missense_Mutation p.P231L 0.38 deleterious(0.01) benign(0.236) TCGA-YC-A89H-01 9 37782096 37782096 A G EXOSC3 Silent p.N171N 0.31 TCGA-YC-A89H-01 9 39149841 39149841 G A CNTNAP3 Silent p.F537F 0.39 TCGA-YC-A89H-01 9 4490673 4490673 G A SLC1A1 5'UTR 0.38 TCGA-YC-A89H-01 9 4712977 4712977 C T AK3 Silent p.%3D 0.21 TCGA-YC-A89H-01 9 5823987 5823987 G A ERMP1 Silent p.F261F 0.15 TCGA-YC-A89H-01 9 71395354 71395354 G A FAM122A Missense_Mutation p.E92K 0.26 deleterious(0) probably_damaging(0.975) TCGA-YC-A89H-01 9 71606056 71606056 C A PIP5K1B Missense_Mutation p.S501R 0.28 tolerated_low_confidence(0.26) benign(0.001) TCGA-YC-A89H-01 9 72658989 72658989 C T MAMDC2 5'UTR 0.50 TCGA-YC-A89H-01 9 74345658 74345658 G A TMEM2 Missense_Mutation p.S579L 0.19 deleterious(0) benign(0.441) TCGA-YC-A89H-01 9 75309531 75309531 G A TMC1 Missense_Mutation p.R46K 0.28 tolerated_low_confidence(0.39) benign(0.364) TCGA-YC-A89H-01 9 75531860 75531860 G T ALDH1A1 Silent p.T337T 0.33 TCGA-YC-A89H-01 9 77742513 77742513 A G OSTF1 Missense_Mutation p.D37G 0.41 deleterious(0.02) probably_damaging(1) TCGA-YC-A89H-01 9 78506107 78506107 G A PCSK5 Missense_Mutation p.G4R 0.33 tolerated_low_confidence(0.31) benign(0.003) TCGA-YC-A89H-01 9 84202598 84202598 G A TLE1 Nonsense_Mutation p.Q659* 0.13 TCGA-YC-A89H-01 9 84603809 84603809 G A SPATA31D1 Missense_Mutation p.D26N 0.21 tolerated_low_confidence(0.21) probably_damaging(0.983) TCGA-YC-A89H-01 9 88193929 88193929 G T AGTPBP1 Missense_Mutation p.S1043Y 0.35 deleterious(0) probably_damaging(0.951) TCGA-YC-A89H-01 9 88661428 88661428 G A GOLM1 Nonsense_Mutation p.Q142* 0.38 TCGA-YC-A89H-01 9 893925 893925 C T DMRT1 Silent p.V184V 0.26 TCGA-YC-A89H-01 9 90272959 90272959 C T DAPK1 Silent p.L614L 0.31 TCGA-YC-A89H-01 9 91616199 91616199 G A S1PR3 Silent p.L28L 0.28 TCGA-YC-A89H-01 9 91934667 91934667 C T SECISBP2 Missense_Mutation p.S46F 0.34 tolerated(0.43) benign(0.001) TCGA-YC-A89H-01 9 94794676 94794676 C T SPTLC1 3'UTR 0.29 TCGA-YC-A89H-01 9 94984955 94984955 C G IARS Splice_Site p.X1185_splice 0.05 TCGA-YC-A89H-01 9 95073484 95073484 C T NOL8 Missense_Mutation p.E806K 0.35 deleterious(0) possibly_damaging(0.489) TCGA-YC-A89H-01 9 95481546 95481546 C T BICD2 Missense_Mutation p.E461K 0.26 tolerated(0.37) benign(0.013) TCGA-YC-A89H-01 9 95610513 95610513 C T ZNF484 Missense_Mutation p.E188K 0.32 tolerated(1) benign(0) TCGA-YC-A89H-01 9 96214485 96214485 C T FAM120A Silent p.F96F 0.39 TCGA-YC-A89H-01 9 96233572 96233572 C T FAM120A Silent p.N208N 0.06 TCGA-YC-A89H-01 X 101911249 101911249 T C GPRASP1 Missense_Mutation p.L803P 0.12 tolerated(0.21) possibly_damaging(0.562) TCGA-YC-A89H-01 X 101912201 101912201 G A GPRASP1 Silent p.R1120R 0.08 TCGA-YC-A89H-01 X 103216745 103216745 C T TMSB15B 5'Flank 0.64 TCGA-YC-A89H-01 X 105937479 105937479 G A RNF128 Missense_Mutation p.E56K 0.44 tolerated(0.63) benign(0.003) TCGA-YC-A89H-01 X 108631750 108631750 A G GUCY2F Missense_Mutation p.V975A 0.06 deleterious(0.02) probably_damaging(0.994) TCGA-YC-A89H-01 X 108652227 108652227 G C GUCY2F Silent p.L654L 0.34 TCGA-YC-A89H-01 X 108781313 108781313 G A NXT2 Missense_Mutation p.E74K 0.37 deleterious(0) possibly_damaging(0.702) TCGA-YC-A89H-01 X 110492174 110492174 C G CAPN6 Missense_Mutation p.E424Q 0.33 tolerated(0.12) probably_damaging(0.913) TCGA-YC-A89H-01 X 11161892 11161892 G A ARHGAP6 Intron 0.42 TCGA-YC-A89H-01 X 111698169 111698169 C G ZCCHC16 Missense_Mutation p.C71W 0.08 deleterious(0.03) benign(0.002) TCGA-YC-A89H-01 X 11272783 11272783 C T ARHGAP6 Silent p.L211L 0.37 TCGA-YC-A89H-01 X 114874780 114874780 G A PLS3 Missense_Mutation p.E318K 0.28 tolerated(0.87) benign(0.002) TCGA-YC-A89H-01 X 123022477 123022477 G A XIAP Missense_Mutation p.D296N 0.41 deleterious(0) probably_damaging(1) TCGA-YC-A89H-01 X 123540312 123540312 A G TENM1 Silent p.N1670N 0.35 TCGA-YC-A89H-01 X 129200688 129200688 C A ELF4 3'UTR 0.49 TCGA-YC-A89H-01 X 129200774 129200774 C T ELF4 Silent p.L638L 0.44 TCGA-YC-A89H-01 X 131205217 131205217 G A MST4 Missense_Mutation p.D302N 0.07 tolerated(0.09) benign(0.001) TCGA-YC-A89H-01 X 131216533 131216533 C T FRMD7 Missense_Mutation p.E255K 0.43 deleterious(0.01) possibly_damaging(0.594) TCGA-YC-A89H-01 X 135496340 135496340 T C GPR112 Missense_Mutation p.I3020T 0.06 deleterious(0.02) benign(0.02) TCGA-YC-A89H-01 X 135741492 135741492 C T CD40LG Missense_Mutation p.A235V 0.08 tolerated(0.27) benign(0.051) TCGA-YC-A89H-01 X 13771419 13771419 C T OFD1 Intron 0.46 TCGA-YC-A89H-01 X 139040251 139040251 G A CXorf66 Silent p.L72L 0.41 TCGA-YC-A89H-01 X 139866539 139866539 A T CDR1 5'UTR 0.11 TCGA-YC-A89H-01 X 144905297 144905297 C A SLITRK2 Missense_Mutation p.L452I 0.43 deleterious(0) probably_damaging(0.999) TCGA-YC-A89H-01 X 147924502 147924502 C T AFF2 Silent p.L396L 0.46 TCGA-YC-A89H-01 X 14863104 14863104 T C FANCB Missense_Mutation p.I601V 0.46 tolerated(0.58) benign(0.034) TCGA-YC-A89H-01 X 153657422 153657422 C T ATP6AP1 Missense_Mutation p.H64Y 0.33 tolerated(0.58) benign(0.367) TCGA-YC-A89H-01 X 153880831 153880831 G A CTAG2 Missense_Mutation p.P115L 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.693) TCGA-YC-A89H-01 X 155235792 155235792 G C IL9R Missense_Mutation p.A276P 0.41 tolerated(0.07) benign(0.26) TCGA-YC-A89H-01 X 15619065 15619065 G A ACE2 5'UTR 0.37 TCGA-YC-A89H-01 X 19026171 19026171 T C GPR64 Missense_Mutation p.N498S 0.44 tolerated(0.1) benign(0.046) TCGA-YC-A89H-01 X 19955540 19955540 T C CXorf23 Intron 0.41 TCGA-YC-A89H-01 X 19984597 19984603 TAATATA - CXorf23 Frame_Shift_Del p.I69Tfs*13 0.35 TCGA-YC-A89H-01 X 23700631 23700631 A G PRDX4 Missense_Mutation p.K240E 0.33 tolerated(0.27) benign(0.004) TCGA-YC-A89H-01 X 23801775 23801775 G A SAT1 Missense_Mutation p.E23K 0.44 deleterious(0.01) possibly_damaging(0.776) TCGA-YC-A89H-01 X 24080591 24080591 C T EIF2S3 Silent p.I179I 0.09 TCGA-YC-A89H-01 X 31090053 31090053 C T FTHL17 Silent p.P6P 0.29 TCGA-YC-A89H-01 X 34657380 34657380 G A TMEM47 Silent p.V117V 0.53 TCGA-YC-A89H-01 X 37312604 37312604 C T PRRG1 Silent p.I129I 0.38 TCGA-YC-A89H-01 X 40511029 40511029 C T MED14 3'UTR 0.54 TCGA-YC-A89H-01 X 41057836 41057836 G A USP9X Missense_Mutation p.R1479K 0.33 tolerated(0.72) benign(0) TCGA-YC-A89H-01 X 41196678 41196678 G A DDX3X Silent p.L21L 0.08 TCGA-YC-A89H-01 X 41586877 41586877 C T GPR82 Nonsense_Mutation p.Q200* 0.51 TCGA-YC-A89H-01 X 43817833 43817833 C T NDP Missense_Mutation p.G20E 0.34 tolerated_low_confidence(0.13) benign(0.348) TCGA-YC-A89H-01 X 49029537 49029537 C T PLP2 Missense_Mutation p.S53L 0.35 deleterious(0.01) benign(0.141) TCGA-YC-A89H-01 X 50350962 50350962 C T SHROOM4 Silent p.E1060E 0.45 TCGA-YC-A89H-01 X 53407543 53407543 C T SMC1A Missense_Mutation p.E1206K 0.50 deleterious(0.01) benign(0.444) TCGA-YC-A89H-01 X 54117861 54117861 T C FAM120C Splice_Site p.X771_splice 0.47 TCGA-YC-A89H-01 X 54836533 54836533 G A MAGED2 Missense_Mutation p.E142K 0.38 tolerated_low_confidence(0.17) possibly_damaging(0.601) TCGA-YC-A89H-01 X 57620933 57620933 T C ZXDB 3'UTR 0.15 TCGA-YC-A89H-01 X 5811560 5811560 C G NLGN4X Silent p.R583R 0.12 TCGA-YC-A89H-01 X 69263010 69263010 C T AWAT2 Missense_Mutation p.G186R 0.70 deleterious(0.01) probably_damaging(1) TCGA-YC-A89H-01 X 69354412 69354412 G A IGBP1 Silent p.L76L 0.39 TCGA-YC-A89H-01 X 69623806 69623806 G A KIF4A Silent p.E904E 0.43 TCGA-YC-A89H-01 X 69960586 69960586 C T TEX11 Missense_Mutation p.D285N 0.29 tolerated(0.12) benign(0.041) TCGA-YC-A89H-01 X 70357156 70357156 T G MED12 Missense_Mutation p.S1891A 0.48 benign(0.001) TCGA-YC-A89H-01 X 70643866 70643866 G A TAF1 Missense_Mutation p.D1560N 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-YC-A89H-01 X 76939028 76939028 T C ATRX Missense_Mutation p.I574V 0.06 benign(0.1) TCGA-YC-A89H-01 X 77298852 77298852 C G ATP7A Nonsense_Mutation p.S1348* 0.06 TCGA-YC-A89H-01 X 88008665 88008665 G A CPXCR1 Missense_Mutation p.D84N 0.59 tolerated(0.12) possibly_damaging(0.908) TCGA-YC-A89H-01 X 91132522 91132522 C T PCDH11X Missense_Mutation p.S428F 0.30 deleterious(0.01) benign(0.033) TCGA-YC-A8S6-01 10 52086968 52086968 C T SGMS1 Silent p.P246P 0.11 TCGA-YC-A8S6-01 10 60994109 60994109 C T PHYHIPL Missense_Mutation p.P51L 0.10 deleterious(0) possibly_damaging(0.756) TCGA-YC-A8S6-01 10 98715188 98715188 G A LCOR Missense_Mutation p.D271N 0.12 tolerated(0.3) possibly_damaging(0.811) TCGA-YC-A8S6-01 10 98715433 98715433 G A LCOR Silent p.E352E 0.16 TCGA-YC-A8S6-01 10 98715440 98715440 G T LCOR Nonsense_Mutation p.E355* 0.16 TCGA-YC-A8S6-01 10 98715605 98715605 G A LCOR Missense_Mutation p.D410N 0.17 deleterious_low_confidence(0.03) benign(0.011) TCGA-YC-A8S6-01 11 108535942 108535942 A G DDX10 Missense_Mutation p.N21S 0.19 tolerated(0.06) benign(0.214) TCGA-YC-A8S6-01 11 34097786 34097786 C T CAPRIN1 Nonsense_Mutation p.Q124* 0.17 TCGA-YC-A8S6-01 11 44079972 44079972 G A ACCSL Missense_Mutation p.R478H 0.12 tolerated(0.13) benign(0.04) TCGA-YC-A8S6-01 11 47282064 47282064 C T NR1H3 Silent p.L113L 0.17 TCGA-YC-A8S6-01 11 533552 533552 C A HRAS Missense_Mutation p.K117N 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-YC-A8S6-01 11 56431315 56431315 G C OR5AR1 Missense_Mutation p.D52H 0.11 deleterious(0) probably_damaging(0.966) TCGA-YC-A8S6-01 11 77934544 77934544 G T GAB2 Missense_Mutation p.T494K 0.13 deleterious(0.02) benign(0.089) TCGA-YC-A8S6-01 12 111785412 111785412 G A CUX2 Silent p.P1248P 0.13 TCGA-YC-A8S6-01 12 44166790 44166790 G A IRAK4 Missense_Mutation p.G189D 0.14 deleterious(0) probably_damaging(1) TCGA-YC-A8S6-01 12 4794444 4794444 G A NDUFA9 Missense_Mutation p.E306K 0.14 tolerated(0.17) possibly_damaging(0.579) TCGA-YC-A8S6-01 12 51208091 51208091 G A ATF1 Silent p.Q180Q 0.13 TCGA-YC-A8S6-01 12 56482606 56482606 A C ERBB3 Missense_Mutation p.T355P 0.09 deleterious(0) probably_damaging(0.986) TCGA-YC-A8S6-01 12 8375060 8375060 G A FAM90A1 Silent p.L251L 0.10 TCGA-YC-A8S6-01 12 99059453 99059453 G A APAF1 Missense_Mutation p.D360N 0.10 deleterious(0.04) possibly_damaging(0.691) TCGA-YC-A8S6-01 13 103701791 103701791 C T SLC10A2 Missense_Mutation p.R256Q 0.10 deleterious(0) probably_damaging(0.99) TCGA-YC-A8S6-01 13 111372030 111372030 G - ING1 Frame_Shift_Del p.A341Rfs*26 0.17 TCGA-YC-A8S6-01 13 21306021 21306021 G T N6AMT2 Missense_Mutation p.T156N 0.10 deleterious(0) probably_damaging(1) TCGA-YC-A8S6-01 13 36744756 36744756 G A SOHLH2 Missense_Mutation p.P467L 0.06 deleterious(0) probably_damaging(0.999) TCGA-YC-A8S6-01 14 104205089 104205089 C T PPP1R13B Missense_Mutation p.A931T 0.16 deleterious(0) possibly_damaging(0.656) TCGA-YC-A8S6-01 14 105834449 105834449 G A PACS2 Missense_Mutation p.E209K 0.13 deleterious(0.05) probably_damaging(0.99) TCGA-YC-A8S6-01 14 96707010 96707010 C T BDKRB2 Silent p.I115I 0.19 TCGA-YC-A8S6-01 14 96707559 96707559 C T BDKRB2 Silent p.L298L 0.07 TCGA-YC-A8S6-01 15 22711467 22711467 G A RN7SL545P 5'Flank 0.35 TCGA-YC-A8S6-01 15 43527907 43527907 G A TGM5 Missense_Mutation p.R492W 0.12 tolerated(0.09) benign(0.01) TCGA-YC-A8S6-01 15 52258158 52258158 C G LEO1 Missense_Mutation p.R201T 0.11 tolerated_low_confidence(0.25) benign(0.034) TCGA-YC-A8S6-01 15 52258567 52258567 C T LEO1 Missense_Mutation p.D65N 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YC-A8S6-01 15 64446697 64446697 C T SNX22 Missense_Mutation p.P191L 0.05 tolerated_low_confidence(0.15) probably_damaging(0.913) TCGA-YC-A8S6-01 15 81188330 81188330 C G KIAA1199 Missense_Mutation p.S447C 0.10 deleterious(0) probably_damaging(0.999) TCGA-YC-A8S6-01 15 90432325 90432325 G A C15orf38-AP3S2 Silent p.V240V 0.09 TCGA-YC-A8S6-01 16 29816599 29816599 C T KIF22 Missense_Mutation p.L656F 0.09 tolerated(0.19) benign(0.01) TCGA-YC-A8S6-01 16 30721183 30721183 C G SRCAP Missense_Mutation p.Q290E 0.11 unknown(0) TCGA-YC-A8S6-01 16 3656571 3656571 C T SLX4 Missense_Mutation p.E222K 0.11 tolerated(0.18) benign(0.077) TCGA-YC-A8S6-01 16 81116535 81116535 G C GCSH Nonsense_Mutation p.S153* 0.12 TCGA-YC-A8S6-01 16 89857867 89857867 G A FANCA Missense_Mutation p.R435C 0.08 deleterious(0) possibly_damaging(0.689) TCGA-YC-A8S6-01 17 1481606 1481606 G T SLC43A2 Missense_Mutation p.F454L 0.13 deleterious(0) probably_damaging(0.998) TCGA-YC-A8S6-01 17 17700521 17700521 C G RAI1 Missense_Mutation p.S1420C 0.10 deleterious(0.05) benign(0.01) TCGA-YC-A8S6-01 17 17701151 17701151 C G RAI1 Missense_Mutation p.S1630C 0.11 deleterious(0.01) possibly_damaging(0.592) TCGA-YC-A8S6-01 17 34163221 34163221 C G TAF15 Missense_Mutation p.F253L 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.666) TCGA-YC-A8S6-01 17 48762232 48762232 C G ABCC3 Missense_Mutation p.L1426V 0.12 deleterious(0) probably_damaging(0.993) TCGA-YC-A8S6-01 18 77895642 77895642 C G ADNP2 Missense_Mutation p.I782M 0.14 tolerated(0.11) benign(0.158) TCGA-YC-A8S6-01 19 10169268 10169268 G C C3P1 RNA 0.18 TCGA-YC-A8S6-01 19 10476531 10476531 G A TYK2 Nonsense_Mutation p.Q225* 0.28 TCGA-YC-A8S6-01 19 23415060 23415060 G C ZNF724P Missense_Mutation p.F13L 0.15 deleterious(0.01) possibly_damaging(0.787) TCGA-YC-A8S6-01 19 35510353 35510353 C T GRAMD1A Missense_Mutation p.T464M 0.04 deleterious(0) probably_damaging(0.919) TCGA-YC-A8S6-01 19 38817438 38817438 G A KCNK6 Silent p.L176L 0.22 TCGA-YC-A8S6-01 19 48244458 48244458 G T EHD2 Silent p.L467L 0.19 TCGA-YC-A8S6-01 19 48248865 48248865 G A GLTSCR2 Missense_Mutation p.D17N 0.19 tolerated_low_confidence(0.21) benign(0.002) TCGA-YC-A8S6-01 19 48248932 48248932 G A GLTSCR2 Missense_Mutation p.R39Q 0.21 deleterious(0.02) benign(0.16) TCGA-YC-A8S6-01 1 145508206 145508206 G C RBM8A Splice_Site p.X43_splice 0.09 TCGA-YC-A8S6-01 1 154542033 154542033 G A CHRNB2 Missense_Mutation p.E54K 0.08 deleterious(0) possibly_damaging(0.472) TCGA-YC-A8S6-01 1 156813266 156813266 C T INSRR Missense_Mutation p.R950K 0.12 tolerated(0.59) benign(0.005) TCGA-YC-A8S6-01 1 171236758 171236758 C T FMO1 Missense_Mutation p.S70L 0.12 deleterious(0) possibly_damaging(0.828) TCGA-YC-A8S6-01 1 207039230 207039230 C G IL20 Silent p.L11L 0.16 TCGA-YC-A8S6-01 1 24657946 24657947 CC - GRHL3 Frame_Shift_Del p.P17Sfs*10 0.10 TCGA-YC-A8S6-01 1 26012975 26012975 G A MAN1C1 Silent p.G195G 0.10 TCGA-YC-A8S6-01 1 26013003 26013003 G C MAN1C1 Missense_Mutation p.D205H 0.07 tolerated(0.12) benign(0.06) TCGA-YC-A8S6-01 1 27101524 27101525 CA G ARID1A Frame_Shift_Del p.S1602Rfs*10 0.13 TCGA-YC-A8S6-01 1 27685224 27685224 C T MAP3K6 Silent p.G853G 0.23 TCGA-YC-A8S6-01 1 27685334 27685334 C T MAP3K6 Missense_Mutation p.E817K 0.12 deleterious(0.01) probably_damaging(1) TCGA-YC-A8S6-01 1 28559472 28559472 C A DNAJC8 Missense_Mutation p.G13V 0.10 tolerated(0.23) unknown(0) TCGA-YC-A8S6-01 1 35370344 35370344 G A DLGAP3 Missense_Mutation p.P214L 0.07 tolerated(0.31) benign(0.008) TCGA-YC-A8S6-01 1 43004913 43004913 G C CCDC30 Missense_Mutation p.E63Q 0.07 deleterious(0.03) possibly_damaging(0.904) TCGA-YC-A8S6-01 1 82408748 82408748 C G LPHN2 Missense_Mutation p.Q165E 0.13 deleterious(0) possibly_damaging(0.867) TCGA-YC-A8S6-01 20 14306876 14306876 G C FLRT3 Missense_Mutation p.S426C 0.20 deleterious(0) possibly_damaging(0.548) TCGA-YC-A8S6-01 21 43161270 43161270 C T RIPK4 Missense_Mutation p.D695N 0.12 tolerated(0.33) benign(0.001) TCGA-YC-A8S6-01 21 43162084 43162084 C A RIPK4 Missense_Mutation p.M423I 0.10 deleterious(0.04) benign(0.108) TCGA-YC-A8S6-01 22 22764320 22764320 C T IGLV1-40 Missense_Mutation p.S21F 0.11 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-YC-A8S6-01 2 1842957 1842957 G A MYT1L Missense_Mutation p.S1013L 0.14 tolerated(0.27) probably_damaging(0.91) TCGA-YC-A8S6-01 2 190532556 190532556 C T ASNSD1 Nonsense_Mutation p.Q511* 0.15 TCGA-YC-A8S6-01 2 207012361 207012361 C T NDUFS1 Missense_Mutation p.D163N 0.08 deleterious(0) probably_damaging(0.998) TCGA-YC-A8S6-01 2 48807804 48807804 C A STON1-GTF2A1L Missense_Mutation p.T11N 0.09 deleterious(0) probably_damaging(0.997) TCGA-YC-A8S6-01 3 170078989 170078989 A T SKIL Missense_Mutation p.Q290H 0.08 deleterious(0) probably_damaging(0.998) TCGA-YC-A8S6-01 3 196547373 196547373 C G PAK2 Missense_Mutation p.L429V 0.10 deleterious(0) probably_damaging(0.995) TCGA-YC-A8S6-01 3 20167532 20167532 G A KAT2B Missense_Mutation p.G517S 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-YC-A8S6-01 3 38038627 38038627 G A VILL Silent p.K170K 0.10 TCGA-YC-A8S6-01 3 85935337 85935337 C T CADM2 Intron 0.12 TCGA-YC-A8S6-01 4 3371886 3371886 G A RGS12 Intron 0.17 TCGA-YC-A8S6-01 4 39291471 39291471 G C RFC1 Missense_Mutation p.I1120M 0.07 deleterious(0.02) probably_damaging(0.937) TCGA-YC-A8S6-01 4 48512857 48512857 C T FRYL Missense_Mutation p.E2764K 0.16 tolerated(0.17) probably_damaging(0.993) TCGA-YC-A8S6-01 4 62679581 62679581 C T LPHN3 Missense_Mutation p.S417F 0.09 tolerated(0.14) benign(0.405) TCGA-YC-A8S6-01 5 140262975 140262975 G T PCDHA13 Silent p.V374V 0.04 TCGA-YC-A8S6-01 5 37318134 37318134 C T NUP155 Missense_Mutation p.G754E 0.06 deleterious(0.01) benign(0.41) TCGA-YC-A8S6-01 5 88047700 88047700 T C MEF2C Missense_Mutation p.H206R 0.14 deleterious(0) probably_damaging(0.996) TCGA-YC-A8S6-01 6 106553664 106553664 C T PRDM1 Silent p.S543S 0.06 TCGA-YC-A8S6-01 6 137147593 137147593 G C PEX7 Missense_Mutation p.E109Q 0.13 deleterious(0) probably_damaging(0.992) TCGA-YC-A8S6-01 6 27368615 27368615 C G ZNF391 Missense_Mutation p.Q156E 0.11 deleterious(0.04) benign(0.027) TCGA-YC-A8S6-01 6 27839983 27839983 C G HIST1H3I Missense_Mutation p.K37N 0.10 deleterious_low_confidence(0.03) benign(0.069) TCGA-YC-A8S6-01 6 29275369 29275369 G C OR14J1 Missense_Mutation p.K301N 0.13 deleterious(0.02) benign(0.26) TCGA-YC-A8S6-01 6 29454818 29454818 C G MAS1L Missense_Mutation p.D288H 0.07 tolerated(0.16) possibly_damaging(0.852) TCGA-YC-A8S6-01 6 35466227 35466227 G A TULP1 Silent p.I502I 0.10 TCGA-YC-A8S6-01 6 49814262 49814262 C G CRISP1 Missense_Mutation p.D136H 0.08 deleterious(0.03) possibly_damaging(0.907) TCGA-YC-A8S6-01 6 90432691 90432691 C T MDN1 Missense_Mutation p.E1984K 0.14 benign(0.001) TCGA-YC-A8S6-01 6 90438806 90438806 G T MDN1 Silent p.T1731T 0.08 TCGA-YC-A8S6-01 7 112124867 112124867 G A LSMEM1 Intron 0.08 TCGA-YC-A8S6-01 7 120906785 120906785 C T CPED1 Silent p.G852G 0.04 TCGA-YC-A8S6-01 7 122341991 122341991 G A RNF148 Missense_Mutation p.R272C 0.07 deleterious(0.01) benign(0.027) TCGA-YC-A8S6-01 7 128486853 128486853 G C FLNC Missense_Mutation p.K1394N 0.11 deleterious(0.02) probably_damaging(0.967) TCGA-YC-A8S6-01 7 151864287 151864287 C A KMT2C Nonsense_Mutation p.E3232* 0.09 TCGA-YC-A8S6-01 7 151949177 151949177 T C KMT2C Splice_Site p.X490_splice 0.11 TCGA-YC-A8S6-01 7 4011127 4011127 G A SDK1 Missense_Mutation p.D582N 0.14 deleterious(0.04) benign(0.311) TCGA-YC-A8S6-01 7 4011181 4011181 G T SDK1 Missense_Mutation p.D600Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-YC-A8S6-01 7 96747015 96747015 C G ACN9 5'UTR 0.12 TCGA-YC-A8S6-01 8 140630715 140630715 G A KCNK9 Missense_Mutation p.S304L 0.15 tolerated(0.76) benign(0) TCGA-YC-A8S6-01 8 142451330 142451330 C T CTD-3064M3.7 3'Flank 0.27 TCGA-YC-A8S6-01 8 28574438 28574438 C T EXTL3 Missense_Mutation p.L288F 0.08 tolerated(0.44) benign(0.072) TCGA-YC-A8S6-01 9 131866465 131866465 A G CRAT Splice_Site p.X137_splice 0.23 TCGA-YC-A8S6-01 9 132597025 132597025 C G C9orf78 Missense_Mutation p.R35T 0.11 deleterious(0) benign(0.103) TCGA-YC-A8S6-01 9 132597449 132597449 C A C9orf78 Nonsense_Mutation p.E18* 0.08 TCGA-YC-A8S6-01 9 135277856 135277856 T C TTF1 Missense_Mutation p.H118R 0.15 tolerated(0.08) benign(0.002) TCGA-YC-A8S6-01 9 20926299 20926299 G A FOCAD Splice_Site p.X988_splice 0.12 TCGA-YC-A8S6-01 9 34125056 34125056 G C DCAF12 Missense_Mutation p.H100D 0.11 tolerated(0.91) possibly_damaging(0.821) TCGA-YC-A8S6-01 9 35555646 35555646 G C RUSC2 Missense_Mutation p.E868D 0.12 tolerated(0.61) probably_damaging(0.986) TCGA-YC-A8S6-01 9 96318698 96318698 C G FAM120A Nonsense_Mutation p.S770* 0.16 TCGA-YC-A8S6-01 9 96320115 96320115 C G FAM120A Missense_Mutation p.Q831E 0.09 tolerated(0.23) benign(0.037) TCGA-YC-A8S6-01 X 107977483 107977483 C T IRS4 Missense_Mutation p.D698N 0.22 deleterious(0) unknown(0) TCGA-YC-A8S6-01 X 123211873 123211873 C T STAG2 Nonsense_Mutation p.Q914* 0.24 TCGA-YC-A8S6-01 X 141290979 141290979 G A MAGEC2 Silent p.F265F 0.07 TCGA-YC-A8S6-01 X 52681320 52681320 G A SSX7 Missense_Mutation p.R88C 0.08 tolerated(0.19) benign(0.001) TCGA-YC-A8S6-01 X 72434011 72434011 C T NAP1L2 Silent p.V106V 0.26 TCGA-YC-A9TC-01 10 6263488 6263488 G A PFKFB3 Missense_Mutation p.A326T 0.33 probably_damaging(0.994) TCGA-YC-A9TC-01 10 73044510 73044510 C T UNC5B Missense_Mutation p.S113L 0.47 deleterious(0.01) benign(0.032) TCGA-YC-A9TC-01 10 75139939 75139939 C G ANXA7 Missense_Mutation p.Q335H 0.37 tolerated(0.14) possibly_damaging(0.593) TCGA-YC-A9TC-01 10 75552335 75552335 G A ZSWIM8 Missense_Mutation p.E680K 0.35 tolerated_low_confidence(0.22) benign(0.188) TCGA-YC-A9TC-01 10 79010959 79010959 G A KCNMA1 Missense_Mutation p.S199L 0.38 tolerated(0.15) possibly_damaging(0.853) TCGA-YC-A9TC-01 10 89725131 89725131 A G PTEN Missense_Mutation p.N372D 0.30 tolerated(0.13) possibly_damaging(0.485) TCGA-YC-A9TC-01 10 96971671 96971671 G A C10orf129 Nonsense_Mutation p.W264* 0.40 TCGA-YC-A9TC-01 11 108235874 108235874 G C ATM Missense_Mutation p.Q2972H 0.41 tolerated(0.17) probably_damaging(0.959) TCGA-YC-A9TC-01 11 111414870 111414870 G A LAYN Missense_Mutation p.R111H 0.38 tolerated(0.44) benign(0.005) TCGA-YC-A9TC-01 11 118453966 118453966 G C ARCN1 Missense_Mutation p.D114H 0.31 deleterious(0) probably_damaging(0.999) TCGA-YC-A9TC-01 11 118925203 118925203 C G HYOU1 Intron 0.36 TCGA-YC-A9TC-01 11 55563777 55563777 C A OR5D14 Missense_Mutation p.S249Y 0.43 deleterious(0) benign(0.389) TCGA-YC-A9TC-01 11 65268310 65268310 A G MALAT1 RNA 0.52 TCGA-YC-A9TC-01 11 7065160 7065160 G T NLRP14 Missense_Mutation p.V635L 0.39 tolerated(0.16) benign(0.139) TCGA-YC-A9TC-01 11 94194190 94194190 T C MRE11A Missense_Mutation p.N413S 0.35 tolerated(0.07) benign(0.026) TCGA-YC-A9TC-01 11 9597625 9597625 G C WEE1 Missense_Mutation p.R256T 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-YC-A9TC-01 12 104152952 104152952 C T STAB2 Silent p.V2383V 0.31 TCGA-YC-A9TC-01 12 123805390 123805390 G A SBNO1 Missense_Mutation p.H783Y 0.20 deleterious(0.03) benign(0.242) TCGA-YC-A9TC-01 12 123806102 123806102 G C SBNO1 Missense_Mutation p.S768C 0.33 tolerated(0.18) possibly_damaging(0.907) TCGA-YC-A9TC-01 12 49425038 49425038 G A KMT2D Nonsense_Mutation p.R4484* 0.24 TCGA-YC-A9TC-01 12 53170964 53170964 C T KRT76 Missense_Mutation p.G38R 0.44 deleterious(0.03) unknown(0) TCGA-YC-A9TC-01 12 53721918 53721918 C T SP7 3'UTR 0.50 TCGA-YC-A9TC-01 12 56524877 56524877 C G ESYT1 Missense_Mutation p.I207M 0.36 deleterious(0) probably_damaging(0.921) TCGA-YC-A9TC-01 12 57908749 57908749 C T MARS Silent p.A704A 0.39 TCGA-YC-A9TC-01 12 76424750 76424750 C T PHLDA1 Missense_Mutation p.E258K 0.34 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-YC-A9TC-01 12 76424754 76424754 C T PHLDA1 Missense_Mutation p.M256I 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-YC-A9TC-01 12 76425092 76425092 C G PHLDA1 Missense_Mutation p.E144Q 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-YC-A9TC-01 13 103506721 103506721 A G BIVM-ERCC5 Missense_Mutation p.H581R 0.30 tolerated(0.13) benign(0.005) TCGA-YC-A9TC-01 13 108518643 108518643 G A FAM155A Missense_Mutation p.P101L 0.39 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-YC-A9TC-01 13 98660336 98660336 G C IPO5 Silent p.V598V 0.37 TCGA-YC-A9TC-01 14 102484885 102484885 A T DYNC1H1 Missense_Mutation p.I2759F 0.38 possibly_damaging(0.689) TCGA-YC-A9TC-01 14 106963095 106963095 C A IGHV1-45 Missense_Mutation p.A63S 0.46 tolerated(0.09) benign(0.002) TCGA-YC-A9TC-01 14 19553543 19553543 G A POTEG Missense_Mutation p.V43M 0.12 tolerated_low_confidence(0.12) benign(0.075) TCGA-YC-A9TC-01 14 20852648 20852648 C A TEP1 Missense_Mutation p.G1081C 0.34 deleterious(0.01) benign(0.269) TCGA-YC-A9TC-01 14 22090453 22090453 G C TRAV1-1 Missense_Mutation p.S20T 0.40 tolerated(0.58) benign(0.391) TCGA-YC-A9TC-01 14 65216094 65216094 G A SPTB Missense_Mutation p.S2306F 0.26 deleterious(0.04) benign(0.078) TCGA-YC-A9TC-01 15 25463768 25463768 C T SNORD115-27 5'Flank 0.35 TCGA-YC-A9TC-01 15 40581093 40581093 G A PLCB2 Silent p.Y1127Y 0.48 TCGA-YC-A9TC-01 15 42168767 42168767 C A SPTBN5 Missense_Mutation p.L1310F 0.27 probably_damaging(0.999) TCGA-YC-A9TC-01 15 42643539 42643539 G C GANC Missense_Mutation p.Q848H 0.47 benign(0.212) TCGA-YC-A9TC-01 15 43991212 43991212 G A CKMT1A Silent p.L393L 0.46 TCGA-YC-A9TC-01 15 45814518 45814518 G C SLC30A4 Missense_Mutation p.S12C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YC-A9TC-01 15 50774154 50774154 G C USP8 Missense_Mutation p.K565N 0.46 tolerated(0.12) probably_damaging(0.977) TCGA-YC-A9TC-01 15 60760350 60760350 C G NARG2 Missense_Mutation p.R106S 0.46 deleterious(0) possibly_damaging(0.643) TCGA-YC-A9TC-01 15 64448746 64448746 G T SNX22 3'UTR 0.50 TCGA-YC-A9TC-01 15 79339117 79339117 G A RASGRF1 Silent p.H283H 0.42 TCGA-YC-A9TC-01 16 18847400 18847400 G A SMG1 Silent p.L2638L 0.43 TCGA-YC-A9TC-01 16 258139 258139 C T LUC7L Missense_Mutation p.E102K 0.34 deleterious(0.03) possibly_damaging(0.775) TCGA-YC-A9TC-01 16 72107863 72107863 C A HPR Silent p.V26V 0.29 TCGA-YC-A9TC-01 17 27493804 27493804 G A MYO18A Missense_Mutation p.S52F 0.39 deleterious_low_confidence(0) possibly_damaging(0.477) TCGA-YC-A9TC-01 17 29684009 29684009 C T NF1 Silent p.H2590H 0.24 TCGA-YC-A9TC-01 17 39727620 39727620 C A KRT9 Missense_Mutation p.D209Y 0.37 deleterious(0) possibly_damaging(0.877) TCGA-YC-A9TC-01 17 46690530 46690530 G A HOXB8 3'UTR 0.46 TCGA-YC-A9TC-01 17 76130591 76130591 T G TMC8 Silent p.V311V 0.52 TCGA-YC-A9TC-01 18 45556217 45556217 C A ZBTB7C Missense_Mutation p.C425F 0.30 deleterious(0) benign(0.392) TCGA-YC-A9TC-01 19 12577551 12577551 G C ZNF709 Missense_Mutation p.N39K 0.28 deleterious(0) possibly_damaging(0.706) TCGA-YC-A9TC-01 19 17305626 17305626 G C MYO9B Missense_Mutation p.Q1130H 0.22 tolerated(0.1) benign(0.019) TCGA-YC-A9TC-01 19 17305752 17305752 G C MYO9B Missense_Mutation p.E1172D 0.22 tolerated(0.16) benign(0.012) TCGA-YC-A9TC-01 19 17305834 17305834 G A MYO9B Missense_Mutation p.D1200N 0.30 tolerated(0.22) benign(0.003) TCGA-YC-A9TC-01 19 1818733 1818733 G A REXO1 Silent p.F958F 0.38 TCGA-YC-A9TC-01 19 1818734 1818734 A C REXO1 Missense_Mutation p.F958C 0.38 deleterious(0.04) probably_damaging(0.947) TCGA-YC-A9TC-01 19 30433554 30433554 C T URI1 Missense_Mutation p.R34C 0.50 deleterious(0) benign(0.007) TCGA-YC-A9TC-01 19 3980668 3980668 T C EEF2 Missense_Mutation p.Y397C 0.39 deleterious(0) probably_damaging(0.999) TCGA-YC-A9TC-01 19 44636539 44636539 G A ZNF225 Missense_Mutation p.G591D 0.39 deleterious(0.01) benign(0.001) TCGA-YC-A9TC-01 19 53057032 53057032 A G ZNF808 Missense_Mutation p.K288R 0.32 tolerated(0.08) probably_damaging(0.978) TCGA-YC-A9TC-01 19 53057033 53057033 G T ZNF808 Missense_Mutation p.K288N 0.31 deleterious(0) probably_damaging(0.995) TCGA-YC-A9TC-01 19 7833908 7833908 T A CLEC4M 3'UTR 0.26 TCGA-YC-A9TC-01 19 9324768 9324768 G A OR7D4 Missense_Mutation p.S249F 0.41 tolerated(0.08) benign(0.05) TCGA-YC-A9TC-01 1 10436732 10436732 C G KIF1B 3'UTR 0.45 TCGA-YC-A9TC-01 1 117509680 117509680 T G PTGFRN Missense_Mutation p.L596R 0.44 tolerated(0.36) possibly_damaging(0.863) TCGA-YC-A9TC-01 1 118581957 118581957 C G SPAG17 Missense_Mutation p.E1093Q 0.43 tolerated(0.19) possibly_damaging(0.529) TCGA-YC-A9TC-01 1 151288456 151288456 G A PI4KB Missense_Mutation p.R180C 0.55 deleterious(0.02) possibly_damaging(0.764) TCGA-YC-A9TC-01 1 155175090 155175090 G A THBS3 Missense_Mutation p.R102W 0.56 deleterious(0) probably_damaging(0.959) TCGA-YC-A9TC-01 1 15844866 15844866 C A CASP9 Missense_Mutation p.D53Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-YC-A9TC-01 1 211093074 211093074 G A KCNH1 Missense_Mutation p.T457I 0.24 deleterious(0) probably_damaging(0.912) TCGA-YC-A9TC-01 1 211961046 211961046 C G LPGAT1 Missense_Mutation p.L127F 0.50 deleterious(0.01) probably_damaging(0.958) TCGA-YC-A9TC-01 1 224606026 224606026 G A WDR26 Missense_Mutation p.H319Y 0.30 deleterious(0) probably_damaging(0.982) TCGA-YC-A9TC-01 1 228491578 228491578 C T OBSCN Silent p.D4647D 0.56 TCGA-YC-A9TC-01 1 228548180 228548180 C G OBSCN Intron 0.20 TCGA-YC-A9TC-01 1 235383646 235383646 C G ARID4B Missense_Mutation p.E460Q 0.59 deleterious(0.04) possibly_damaging(0.587) TCGA-YC-A9TC-01 1 40960733 40960733 G C ZFP69 Missense_Mutation p.D195H 0.38 tolerated(0.12) benign(0.422) TCGA-YC-A9TC-01 1 92479790 92479790 C T BRDT Nonsense_Mutation p.Q935* 0.36 TCGA-YC-A9TC-01 20 23066305 23066305 A G CD93 Silent p.I175I 0.23 TCGA-YC-A9TC-01 20 35749406 35749406 G C MROH8 Silent p.L697L 0.26 TCGA-YC-A9TC-01 20 35749414 35749414 G C MROH8 Missense_Mutation p.L695V 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-YC-A9TC-01 21 27141413 27141413 C T GABPA Missense_Mutation p.A412V 0.37 deleterious(0.04) possibly_damaging(0.688) TCGA-YC-A9TC-01 21 38604747 38604747 C G DSCR3 Missense_Mutation p.Q146H 0.38 deleterious(0.03) possibly_damaging(0.617) TCGA-YC-A9TC-01 22 23523720 23523720 C G BCR Silent p.V191V 0.47 TCGA-YC-A9TC-01 22 38878549 38878549 C T KDELR3 3'Flank 0.29 TCGA-YC-A9TC-01 2 1459994 1459994 C T TPO Silent p.F253F 0.44 TCGA-YC-A9TC-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.79 deleterious(0) probably_damaging(1) TCGA-YC-A9TC-01 2 179595719 179595719 T G TTN Silent p.G5891G 0.76 TCGA-YC-A9TC-01 2 209103821 209103823 CAA AC IDH1 Frame_Shift_Del p.L376Vfs*17 0.41 TCGA-YC-A9TC-01 2 219874109 219874109 G A CCDC108 Missense_Mutation p.S1509F 0.72 deleterious(0) possibly_damaging(0.751) TCGA-YC-A9TC-01 2 48952828 48952828 G C LHCGR Missense_Mutation p.R124G 0.42 tolerated(0.11) benign(0.258) TCGA-YC-A9TC-01 2 61508295 61508295 G T USP34 Missense_Mutation p.S1694Y 0.34 deleterious(0) possibly_damaging(0.706) TCGA-YC-A9TC-01 2 61508328 61508328 G A USP34 Missense_Mutation p.S1683L 0.45 deleterious(0.04) benign(0.034) TCGA-YC-A9TC-01 2 71590290 71590290 G C ZNF638 Missense_Mutation p.D463H 0.35 deleterious(0) probably_damaging(0.999) TCGA-YC-A9TC-01 2 95537391 95537391 G T TEKT4 Missense_Mutation p.A23S 0.29 tolerated(0.4) benign(0.049) TCGA-YC-A9TC-01 3 10401565 10401565 C A ATP2B2 Splice_Site p.X634_splice 0.34 TCGA-YC-A9TC-01 3 119536087 119536087 G C NR1I2 3'UTR 0.42 TCGA-YC-A9TC-01 3 124746144 124746144 G A HEG1 Missense_Mutation p.T273M 0.22 tolerated(0.61) benign(0.004) TCGA-YC-A9TC-01 3 138739282 138739282 G T PRR23B Missense_Mutation p.D74E 0.48 tolerated(0.16) benign(0.05) TCGA-YC-A9TC-01 3 1415425 1415425 G T CNTN6 Missense_Mutation p.G642C 0.49 deleterious(0) probably_damaging(1) TCGA-YC-A9TC-01 3 150917051 150917051 C A GPR171 Missense_Mutation p.Q41H 0.40 tolerated(0.51) benign(0.104) TCGA-YC-A9TC-01 3 160155928 160155928 G T TRIM59 Missense_Mutation p.F348L 0.29 deleterious(0.01) benign(0.421) TCGA-YC-A9TC-01 3 184009952 184009952 C T ECE2 Missense_Mutation p.R860C 0.31 deleterious(0.04) probably_damaging(0.953) TCGA-YC-A9TC-01 3 195690247 195690247 C T SDHAP1 RNA 0.32 TCGA-YC-A9TC-01 3 38039624 38039625 - C VILL Frame_Shift_Ins p.L273Tfs*30 0.21 TCGA-YC-A9TC-01 3 52256336 52256336 C A TLR9 Missense_Mutation p.A820S 0.30 tolerated(0.59) benign(0.052) TCGA-YC-A9TC-01 3 52526118 52526118 G A NISCH Missense_Mutation p.E1379K 0.37 deleterious(0.02) benign(0.024) TCGA-YC-A9TC-01 4 106156348 106156348 C A TET2 Missense_Mutation p.Q417K 0.40 tolerated_low_confidence(1) benign(0.285) TCGA-YC-A9TC-01 4 109663689 109663689 C G ETNPPL Missense_Mutation p.G484A 0.34 deleterious_low_confidence(0.02) benign(0.03) TCGA-YC-A9TC-01 4 119951592 119951592 C T SYNPO2 Silent p.Y554Y 0.22 TCGA-YC-A9TC-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.46 deleterious(0) probably_damaging(1) TCGA-YC-A9TC-01 4 153253817 153253837 GAGCTGCTTGTAGCAGGTCTT CAGC FBXW7 Nonsense_Mutation p.K299Sfs*2 0.28 TCGA-YC-A9TC-01 4 187629069 187629070 - C FAT1 Frame_Shift_Ins p.V638Gfs*38 0.27 TCGA-YC-A9TC-01 4 5018622 5018622 C G CYTL1 Missense_Mutation p.D90H 0.44 tolerated(0.06) probably_damaging(0.989) TCGA-YC-A9TC-01 4 70074116 70074116 C G UGT2B11 Missense_Mutation p.E319Q 0.41 deleterious(0) possibly_damaging(0.675) TCGA-YC-A9TC-01 5 112178837 112178837 G C APC Missense_Mutation p.E2516Q 0.37 probably_damaging(0.923) TCGA-YC-A9TC-01 5 114916672 114916672 G C TMED7-TICAM2 Silent p.L263L 0.41 TCGA-YC-A9TC-01 5 140181491 140181491 G A PCDHA3 Missense_Mutation p.D237N 0.56 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YC-A9TC-01 5 140537807 140537807 C A PCDHB17 3'UTR 0.37 TCGA-YC-A9TC-01 5 147475418 147475418 C G SPINK5 Missense_Mutation p.Q278E 0.46 tolerated(1) benign(0.001) TCGA-YC-A9TC-01 5 150922683 150922683 G C FAT2 Missense_Mutation p.P2669A 0.40 probably_damaging(1) TCGA-YC-A9TC-01 5 178140036 178140036 G A ZNF354A Silent p.L281L 0.39 TCGA-YC-A9TC-01 5 178140129 178140129 G A ZNF354A Silent p.A250A 0.35 TCGA-YC-A9TC-01 5 178140210 178140210 G T ZNF354A Missense_Mutation p.F223L 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-YC-A9TC-01 5 179247944 179247944 C T SQSTM1 Missense_Mutation p.S3L 0.26 deleterious(0.01) benign(0.246) TCGA-YC-A9TC-01 5 6611850 6611850 G C NSUN2 Missense_Mutation p.I361M 0.21 tolerated(0.58) benign(0.156) TCGA-YC-A9TC-01 6 1313386 1313386 C T FOXQ1 Silent p.L149L 0.42 TCGA-YC-A9TC-01 6 135254133 135254133 G T ALDH8A1 Silent p.T210T 0.54 TCGA-YC-A9TC-01 6 158535905 158535905 G A SERAC1 Missense_Mutation p.H534Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-YC-A9TC-01 7 139754465 139754465 G A PARP12 Nonsense_Mutation p.Q287* 0.34 TCGA-YC-A9TC-01 7 150217217 150217217 G A GIMAP7 Missense_Mutation p.R52Q 0.37 tolerated(0.08) possibly_damaging(0.627) TCGA-YC-A9TC-01 7 150741223 150741223 G A ABCB8 Missense_Mutation p.R644H 0.11 deleterious(0) probably_damaging(0.998) TCGA-YC-A9TC-01 7 151845346 151845346 G - KMT2C Frame_Shift_Del p.H4556Tfs*70 0.39 TCGA-YC-A9TC-01 7 30092450 30092450 C T PLEKHA8 Missense_Mutation p.S255L 0.35 tolerated(0.07) benign(0.073) TCGA-YC-A9TC-01 7 73150803 73150803 C G ABHD11 3'UTR 0.53 TCGA-YC-A9TC-01 7 99691001 99691001 C T MCM7 Silent p.V624V 0.35 TCGA-YC-A9TC-01 8 106814835 106814835 G A ZFPM2 Missense_Mutation p.R842Q 0.45 tolerated(0.2) benign(0.013) TCGA-YC-A9TC-01 8 110984974 110984974 C T KCNV1 Silent p.K168K 0.38 TCGA-YC-A9TC-01 8 3257008 3257008 C A CSMD1 Missense_Mutation p.L770F 0.34 probably_damaging(0.962) TCGA-YC-A9TC-01 9 101747877 101747877 C T COL15A1 Missense_Mutation p.T44M 0.35 tolerated(0.09) benign(0.051) TCGA-YC-A9TC-01 9 115456466 115456466 C G INIP Missense_Mutation p.E25Q 0.38 tolerated(0.08) benign(0.004) TCGA-YC-A9TC-01 9 13168365 13168365 T G MPDZ Missense_Mutation p.K1085T 0.41 tolerated(0.18) benign(0.008) TCGA-YC-A9TC-01 9 135772845 135772845 C T TSC1 Silent p.Q926Q 0.44 TCGA-YC-A9TC-01 9 74319665 74319665 C T TMEM2 Missense_Mutation p.E1014K 0.38 deleterious(0.01) probably_damaging(0.937) TCGA-YC-A9TC-01 9 75435902 75435902 C T TMC1 Silent p.Y636Y 0.06 TCGA-YC-A9TC-01 9 8375966 8375966 G T PTPRD Missense_Mutation p.P1544H 0.39 deleterious(0) probably_damaging(0.999) TCGA-YC-A9TC-01 X 105280702 105280702 G A SERPINA7 Silent p.I116I 0.72 TCGA-YC-A9TC-01 X 125686243 125686243 A G DCAF12L1 Missense_Mutation p.C117R 0.90 deleterious(0) probably_damaging(0.999) TCGA-YC-A9TC-01 X 70510515 70510515 G C NONO Missense_Mutation p.E10Q 0.79 deleterious_low_confidence(0.01) benign(0.229) TCGA-YF-AA3L-01 10 102750757 102750757 G C C10orf2 Missense_Mutation p.G575A 0.12 deleterious(0) probably_damaging(0.996) TCGA-YF-AA3L-01 10 104679596 104679596 C T CNNM2 Silent p.L453L 0.36 TCGA-YF-AA3L-01 10 106214302 106214302 G A CCDC147 3'UTR 0.36 TCGA-YF-AA3L-01 10 115392859 115392859 G T NRAP Missense_Mutation p.A539D 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-YF-AA3L-01 10 118434363 118434363 T C HSPA12A Missense_Mutation p.I653V 0.40 tolerated(0.05) possibly_damaging(0.706) TCGA-YF-AA3L-01 10 122622380 122622380 T A WDR11 Silent p.G220G 0.32 TCGA-YF-AA3L-01 10 129347613 129347613 C T NPS 5'UTR 0.32 TCGA-YF-AA3L-01 10 132891354 132891354 C A TCERG1L 3'UTR 0.28 TCGA-YF-AA3L-01 10 134940773 134940773 C G GPR123 Missense_Mutation p.I146M 0.19 deleterious(0) probably_damaging(0.976) TCGA-YF-AA3L-01 10 134999801 134999801 G T KNDC1 Nonsense_Mutation p.E317* 0.42 TCGA-YF-AA3L-01 10 26512836 26512836 C T GAD2 Nonsense_Mutation p.Q181* 0.21 TCGA-YF-AA3L-01 10 37451595 37451595 C G ANKRD30A Missense_Mutation p.S584C 0.16 deleterious(0.05) benign(0.265) TCGA-YF-AA3L-01 10 43088077 43088077 T C ZNF33B Missense_Mutation p.E774G 0.14 deleterious(0.03) benign(0.005) TCGA-YF-AA3L-01 10 48414502 48414502 G C GDF2 Silent p.A122A 0.15 TCGA-YF-AA3L-01 10 5020091 5020091 G A AKR1C1 3'UTR 0.20 TCGA-YF-AA3L-01 10 91099412 91099412 G A IFIT3 Missense_Mutation p.D334N 0.29 tolerated(0.23) benign(0.004) TCGA-YF-AA3L-01 10 96341143 96341143 C T HELLS Missense_Mutation p.R365C 0.07 deleterious(0) probably_damaging(0.985) TCGA-YF-AA3L-01 10 97817951 97817951 C A CCNJ Missense_Mutation p.Q369K 0.34 tolerated(1) possibly_damaging(0.481) TCGA-YF-AA3L-01 11 108032868 108032868 G A NPAT Missense_Mutation p.S1017L 0.67 tolerated(0.44) benign(0.003) TCGA-YF-AA3L-01 11 113111554 113111554 T G NCAM1 Intron 0.24 TCGA-YF-AA3L-01 11 116798054 116798054 C A SIK3 Missense_Mutation p.R108L 0.62 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 11 120673523 120673523 C G GRIK4 Missense_Mutation p.I68M 0.36 deleterious(0.01) possibly_damaging(0.761) TCGA-YF-AA3L-01 11 126432808 126432808 C G KIRREL3 Splice_Site p.X19_splice 0.67 TCGA-YF-AA3L-01 11 134126451 134126451 G C ACAD8 Missense_Mutation p.G40A 0.22 deleterious(0.03) possibly_damaging(0.858) TCGA-YF-AA3L-01 11 32636230 32636230 A T CCDC73 Missense_Mutation p.I545K 0.54 tolerated(0.1) benign(0.006) TCGA-YF-AA3L-01 11 46637541 46637541 C A HARBI1 Missense_Mutation p.G83C 0.49 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 11 4843242 4843242 C T OR51F2 Silent p.N209N 0.45 TCGA-YF-AA3L-01 11 56043265 56043265 C G OR5T1 Missense_Mutation p.L51V 0.25 tolerated(0.22) benign(0.071) TCGA-YF-AA3L-01 11 59578140 59578140 G A MRPL16 5'UTR 0.67 TCGA-YF-AA3L-01 11 78380265 78380265 C G TENM4 Missense_Mutation p.L2375F 0.30 tolerated(0.56) benign(0.043) TCGA-YF-AA3L-01 11 85445166 85445166 T C SYTL2 Silent p.V401V 0.20 TCGA-YF-AA3L-01 11 94532600 94532600 A C AMOTL1 Missense_Mutation p.I82L 0.18 tolerated_low_confidence(0.33) benign(0) TCGA-YF-AA3L-01 12 104681159 104681159 C A TXNRD1 Intron 0.23 TCGA-YF-AA3L-01 12 108686265 108686265 C G CMKLR1 Missense_Mutation p.A159P 0.14 deleterious(0.01) possibly_damaging(0.74) TCGA-YF-AA3L-01 12 109670585 109670585 C T ACACB Silent p.A1371A 0.18 TCGA-YF-AA3L-01 12 111321986 111321986 C T CCDC63 Missense_Mutation p.R336W 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-YF-AA3L-01 12 111785392 111785392 G A CUX2 Missense_Mutation p.G1242R 0.44 tolerated(0.07) benign(0.271) TCGA-YF-AA3L-01 12 112528553 112528554 AT - NAA25 Frame_Shift_Del p.I87Pfs*16 0.22 TCGA-YF-AA3L-01 12 120884211 120884211 C G TRIAP1 5'UTR 0.20 TCGA-YF-AA3L-01 12 122353786 122353786 C T PSMD9 Missense_Mutation p.R194C 0.23 deleterious(0) probably_damaging(0.998) TCGA-YF-AA3L-01 12 12311926 12311926 C T LRP6 Silent p.V876V 0.29 TCGA-YF-AA3L-01 12 124069174 124069174 C T TMED2 5'UTR 0.22 TCGA-YF-AA3L-01 12 133294075 133294075 A G PGAM5 Missense_Mutation p.K141E 0.21 tolerated(0.33) benign(0.011) TCGA-YF-AA3L-01 12 26634118 26634118 C G ITPR2 Silent p.L2023L 0.24 TCGA-YF-AA3L-01 12 41337449 41337449 A T CNTN1 Missense_Mutation p.N477I 0.19 deleterious(0.02) benign(0.158) TCGA-YF-AA3L-01 12 42491761 42491761 G A GXYLT1 Silent p.I313I 0.20 TCGA-YF-AA3L-01 12 46322635 46322635 A G SCAF11 Silent p.S283S 0.21 TCGA-YF-AA3L-01 12 48389067 48389067 G A COL2A1 Missense_Mutation p.P245S 0.11 unknown(0) TCGA-YF-AA3L-01 12 50295185 50295185 C T FAIM2 Intron 0.36 TCGA-YF-AA3L-01 12 5153818 5153818 C T KCNA5 Missense_Mutation p.R169W 0.10 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 12 54338919 54338919 G A HOXC13 Missense_Mutation p.R291Q 0.26 deleterious(0) probably_damaging(0.994) TCGA-YF-AA3L-01 12 54902170 54902170 T C NCKAP1L Intron 0.24 TCGA-YF-AA3L-01 12 68696609 68696609 C T MDM1 Missense_Mutation p.G588D 0.18 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 12 70747767 70747767 A C CNOT2 3'UTR 0.25 TCGA-YF-AA3L-01 12 77254128 77254128 G T CSRP2 Missense_Mutation p.A116D 0.28 deleterious(0.04) benign(0.03) TCGA-YF-AA3L-01 12 80203720 80203720 C A PPP1R12A Missense_Mutation p.R437M 0.46 deleterious(0) probably_damaging(0.997) TCGA-YF-AA3L-01 12 85450711 85450711 A T LRRIQ1 Nonsense_Mutation p.K714* 0.22 TCGA-YF-AA3L-01 12 99109219 99109219 A - APAF1 Frame_Shift_Del p.N992Tfs*56 0.31 TCGA-YF-AA3L-01 13 108881679 108881679 A G ABHD13 Missense_Mutation p.H38R 0.15 tolerated(0.21) benign(0.01) TCGA-YF-AA3L-01 13 111767934 111767934 A - ARHGEF7 Frame_Shift_Del p.T23Pfs*13 0.21 TCGA-YF-AA3L-01 13 113333783 113333783 C G C13orf35 Silent p.A30A 0.25 TCGA-YF-AA3L-01 13 30110113 30110113 C G SLC7A1 Silent p.L71L 0.12 TCGA-YF-AA3L-01 13 77574706 77574706 G C CLN5 Missense_Mutation p.D276H 0.33 deleterious(0.02) possibly_damaging(0.864) TCGA-YF-AA3L-01 13 77671968 77671968 T C MYCBP2 Silent p.P3069P 0.30 TCGA-YF-AA3L-01 14 102494116 102494116 C T DYNC1H1 Missense_Mutation p.P3070L 0.27 probably_damaging(0.996) TCGA-YF-AA3L-01 14 105478227 105478227 C G CDCA4 Missense_Mutation p.E14Q 0.13 tolerated(0.15) benign(0.426) TCGA-YF-AA3L-01 14 106066249 106066249 C T IGHE 3'Flank 0.25 TCGA-YF-AA3L-01 14 106967351 106967351 C A IGHV1-46 Missense_Mutation p.A17S 0.23 deleterious(0.02) benign(0.081) TCGA-YF-AA3L-01 14 21869102 21869102 T A CHD8 Missense_Mutation p.R1434S 0.32 tolerated(0.08) benign(0.275) TCGA-YF-AA3L-01 14 35253090 35253090 C T BAZ1A Silent p.L625L 0.20 TCGA-YF-AA3L-01 14 38723962 38723962 C A CLEC14A Missense_Mutation p.K422N 0.38 deleterious(0) probably_damaging(0.999) TCGA-YF-AA3L-01 14 39790138 39790138 C - CTAGE5 Frame_Shift_Del p.P523Hfs*65 0.17 TCGA-YF-AA3L-01 14 42360761 42360761 A G LRFN5 Missense_Mutation p.K565R 0.23 tolerated(0.49) benign(0.002) TCGA-YF-AA3L-01 14 63174848 63174848 A G KCNH5 Missense_Mutation p.M782T 0.19 tolerated_low_confidence(0.59) benign(0.023) TCGA-YF-AA3L-01 14 66083812 66083812 C T FUT8 Intron 0.13 TCGA-YF-AA3L-01 14 78174474 78174474 G C SLIRP Missense_Mutation p.R7T 0.18 deleterious(0.03) unknown(0) TCGA-YF-AA3L-01 14 81658906 81658906 T C GTF2A1 Missense_Mutation p.E297G 0.26 deleterious(0.01) benign(0.124) TCGA-YF-AA3L-01 14 92150261 92150261 C G CATSPERB Missense_Mutation p.W297C 0.14 deleterious(0) probably_damaging(0.998) TCGA-YF-AA3L-01 14 96707244 96707244 G A BDKRB2 Silent p.L193L 0.16 TCGA-YF-AA3L-01 15 25479394 25479394 G - SNORD115-35 RNA 0.21 TCGA-YF-AA3L-01 15 25959281 25959281 C T ATP10A Silent p.L628L 0.46 TCGA-YF-AA3L-01 15 45695570 45695570 C T SPATA5L1 Nonsense_Mutation p.R315* 0.62 TCGA-YF-AA3L-01 15 48460843 48460843 G T MYEF2 Missense_Mutation p.L119I 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-YF-AA3L-01 15 65496876 65496877 CA - CILP Nonsense_Mutation p.C216* 0.28 TCGA-YF-AA3L-01 15 75499758 75499758 C T C15orf39 Missense_Mutation p.H457Y 0.19 deleterious(0) benign(0.291) TCGA-YF-AA3L-01 15 84553886 84553886 C T ADAMTSL3 Nonsense_Mutation p.Q332* 0.22 TCGA-YF-AA3L-01 15 89386816 89386816 G A ACAN Missense_Mutation p.V330M 0.30 deleterious(0.03) unknown(0) TCGA-YF-AA3L-01 15 89401753 89401753 T C ACAN Silent p.S1979S 0.06 TCGA-YF-AA3L-01 15 90771774 90771774 A G SEMA4B Missense_Mutation p.K805E 0.64 deleterious(0.05) possibly_damaging(0.758) TCGA-YF-AA3L-01 15 90903398 90903398 A T ZNF774 Missense_Mutation p.E112V 0.40 deleterious(0.03) possibly_damaging(0.517) TCGA-YF-AA3L-01 15 91517839 91517839 C G PRC1 Missense_Mutation p.E442D 0.29 deleterious(0.04) benign(0.009) TCGA-YF-AA3L-01 16 17232380 17232380 G C XYLT1 Missense_Mutation p.F532L 0.21 deleterious(0) possibly_damaging(0.728) TCGA-YF-AA3L-01 16 23640966 23640966 C T PALB2 Missense_Mutation p.E837K 0.17 tolerated(0.09) benign(0.156) TCGA-YF-AA3L-01 16 46633784 46633784 C A SHCBP1 Missense_Mutation p.G435V 0.44 deleterious(0) benign(0.079) TCGA-YF-AA3L-01 16 51175346 51175346 C A SALL1 Missense_Mutation p.D263Y 0.41 deleterious(0.04) possibly_damaging(0.838) TCGA-YF-AA3L-01 16 80718994 80718994 C T CDYL2 Silent p.K19K 0.33 TCGA-YF-AA3L-01 16 87902658 87902658 T A SLC7A5 Missense_Mutation p.Y124F 0.45 tolerated(1) benign(0.387) TCGA-YF-AA3L-01 16 90162050 90162050 G C TUBB8P7 RNA 0.33 TCGA-YF-AA3L-01 17 10432900 10432900 A C MYH2 Missense_Mutation p.L1033R 0.35 deleterious(0) probably_damaging(0.988) TCGA-YF-AA3L-01 17 11631237 11631237 C A DNAH9 Missense_Mutation p.Q1938K 0.25 possibly_damaging(0.866) TCGA-YF-AA3L-01 17 1564678 1564678 C G PRPF8 Missense_Mutation p.E1409Q 0.35 deleterious(0) possibly_damaging(0.653) TCGA-YF-AA3L-01 17 16331677 16331677 T C TRPV2 Missense_Mutation p.I466T 0.32 tolerated(0.17) benign(0.232) TCGA-YF-AA3L-01 17 18188763 18188763 T A TOP3A Nonsense_Mutation p.K557* 0.42 TCGA-YF-AA3L-01 17 18220286 18220286 C A SMCR8 Missense_Mutation p.Q395K 0.35 tolerated(0.43) benign(0.031) TCGA-YF-AA3L-01 17 26669438 26669438 C T TNFAIP1 Silent p.I228I 0.28 TCGA-YF-AA3L-01 17 26817487 26817487 C G SLC13A2 Missense_Mutation p.L132V 0.17 deleterious(0) possibly_damaging(0.795) TCGA-YF-AA3L-01 17 29187495 29187495 G A ATAD5 Missense_Mutation p.V1001I 0.10 tolerated(0.27) benign(0.014) TCGA-YF-AA3L-01 17 30821785 30821785 C A MYO1D Missense_Mutation p.G1005W 0.25 deleterious(0) probably_damaging(0.975) TCGA-YF-AA3L-01 17 3649148 3649148 T A ITGAE Silent p.S743S 0.31 TCGA-YF-AA3L-01 17 37864603 37864603 C G ERBB2 Silent p.L85L 0.19 TCGA-YF-AA3L-01 17 38812722 38812722 C G KRT222 Missense_Mutation p.E274Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-YF-AA3L-01 17 40847786 40847786 G C CNTNAP1 Silent p.T1080T 0.29 TCGA-YF-AA3L-01 17 41150691 41150701 TGCTGGCAGGA - RPL27 5'UTR 0.21 TCGA-YF-AA3L-01 17 43195397 43195397 C T PLCD3 Silent p.R408R 0.19 TCGA-YF-AA3L-01 17 43214494 43214494 A C ACBD4 Silent p.R135R 0.26 TCGA-YF-AA3L-01 17 4448452 4448452 C T MYBBP1A Missense_Mutation p.E727K 0.35 tolerated(0.14) benign(0.017) TCGA-YF-AA3L-01 17 4448465 4448465 C A MYBBP1A Missense_Mutation p.K722N 0.33 tolerated(0.17) benign(0.196) TCGA-YF-AA3L-01 17 47587923 47587923 C T NGFR Nonsense_Mutation p.Q240* 0.19 TCGA-YF-AA3L-01 17 49731071 49731071 C A CA10 Missense_Mutation p.E164D 0.11 tolerated(0.37) benign(0.01) TCGA-YF-AA3L-01 17 51902070 51902070 A T KIF2B Missense_Mutation p.H559L 0.13 tolerated(0.26) benign(0.034) TCGA-YF-AA3L-01 17 61838273 61838273 C G CCDC47 Splice_Site p.X245_splice 0.19 TCGA-YF-AA3L-01 17 67031829 67031829 G A ABCA9 Missense_Mutation p.T305I 0.10 tolerated(0.52) benign(0.02) TCGA-YF-AA3L-01 17 70120328 70120328 G T SOX9 Missense_Mutation p.D444Y 0.54 deleterious(0) probably_damaging(0.914) TCGA-YF-AA3L-01 17 74042242 74042242 G C SRP68 Missense_Mutation p.I392M 0.13 deleterious(0.01) possibly_damaging(0.824) TCGA-YF-AA3L-01 17 76354643 76354643 C T SOCS3 Silent p.L178L 0.24 TCGA-YF-AA3L-01 17 78078670 78078670 C T GAA Silent p.D95D 0.20 TCGA-YF-AA3L-01 17 80789177 80789177 T G ZNF750 Missense_Mutation p.K385T 0.53 deleterious(0.03) possibly_damaging(0.787) TCGA-YF-AA3L-01 18 22804871 22804871 A G ZNF521 Missense_Mutation p.L1004S 0.47 deleterious(0.01) probably_damaging(0.974) TCGA-YF-AA3L-01 18 30093007 30093007 C T WBP11P1 RNA 0.36 TCGA-YF-AA3L-01 18 33779834 33779834 T C MOCOS Missense_Mutation p.M163T 0.50 tolerated(0.46) benign(0) TCGA-YF-AA3L-01 18 61325746 61325746 C T SERPINB3 Splice_Site p.X157_splice 0.37 TCGA-YF-AA3L-01 19 1079965 1079965 G T HMHA1 Silent p.T533T 0.22 TCGA-YF-AA3L-01 19 15342650 15342650 T C EPHX3 Missense_Mutation p.Y89C 0.11 deleterious(0.01) benign(0.03) TCGA-YF-AA3L-01 19 19546984 19546984 G T GATAD2A Intron 0.32 TCGA-YF-AA3L-01 19 20235986 20235986 G A CTC-260E6.2 RNA 0.46 TCGA-YF-AA3L-01 19 36332721 36332721 A T NPHS1 Missense_Mutation p.L904Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-YF-AA3L-01 19 36430949 36430949 C T LRFN3 Missense_Mutation p.R208W 0.21 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 19 36594302 36594302 A G WDR62 Missense_Mutation p.D1191G 0.13 tolerated(0.08) benign(0.014) TCGA-YF-AA3L-01 19 37210382 37210382 A C ZNF567 Missense_Mutation p.K221N 0.29 tolerated(0.28) benign(0.006) TCGA-YF-AA3L-01 19 38871637 38871637 C G PSMD8 Missense_Mutation p.I267M 0.28 deleterious(0.04) benign(0.403) TCGA-YF-AA3L-01 19 38901777 38901777 T A RASGRP4 Silent p.T610T 0.41 TCGA-YF-AA3L-01 19 40521566 40521567 AG - ZNF546 Frame_Shift_Del p.R797Nfs*5 0.22 TCGA-YF-AA3L-01 19 40886586 40886586 C G HIPK4 Missense_Mutation p.G438R 0.30 tolerated_low_confidence(0.12) benign(0.016) TCGA-YF-AA3L-01 19 43699334 43699334 C G PSG4 Missense_Mutation p.K267N 0.19 tolerated(1) benign(0.004) TCGA-YF-AA3L-01 19 46177994 46177994 G A GIPR Missense_Mutation p.M181I 0.17 tolerated(1) benign(0.003) TCGA-YF-AA3L-01 19 46215489 46215489 G T FBXO46 Missense_Mutation p.P422Q 0.31 tolerated(0.67) probably_damaging(0.917) TCGA-YF-AA3L-01 19 46299114 46299114 T C RSPH6A 3'UTR 0.24 TCGA-YF-AA3L-01 19 49362896 49362896 G A PLEKHA4 Silent p.P174P 0.27 TCGA-YF-AA3L-01 19 49934656 49934656 G A SLC17A7 Silent p.S400S 0.35 TCGA-YF-AA3L-01 19 50473721 50473721 G A SIGLEC16 RNA 0.14 TCGA-YF-AA3L-01 19 51135642 51135642 C T SYT3 Missense_Mutation p.G192E 0.15 tolerated(1) benign(0.009) TCGA-YF-AA3L-01 19 51322415 51322415 T C KLK1 3'UTR 0.10 TCGA-YF-AA3L-01 19 51506165 51506165 C T KLK9 3'UTR 0.17 TCGA-YF-AA3L-01 19 51955754 51955754 G A SIGLEC8 Missense_Mutation p.P460L 0.24 tolerated(0.71) benign(0.004) TCGA-YF-AA3L-01 19 53208600 53208600 C A ZNF611 Nonsense_Mutation p.E570* 0.22 TCGA-YF-AA3L-01 19 54385791 54385791 C T PRKCG Missense_Mutation p.P15S 0.15 tolerated(0.46) benign(0.016) TCGA-YF-AA3L-01 19 57325023 57325023 C T PEG3 3'UTR 0.23 TCGA-YF-AA3L-01 19 57326731 57326731 C G PEG3 Missense_Mutation p.E1027Q 0.13 tolerated(0.33) benign(0.013) TCGA-YF-AA3L-01 19 7615304 7615304 C T PNPLA6 Silent p.R654R 0.38 TCGA-YF-AA3L-01 19 9016680 9016680 G A MUC16 Missense_Mutation p.S12686F 0.30 possibly_damaging(0.872) TCGA-YF-AA3L-01 1 109395169 109395169 C T AKNAD1 Missense_Mutation p.G40S 0.12 tolerated(0.31) benign(0.008) TCGA-YF-AA3L-01 1 112003611 112003611 A G ATP5F1 Missense_Mutation p.M256V 0.13 tolerated_low_confidence(0.08) benign(0.001) TCGA-YF-AA3L-01 1 115319072 115319072 C G SIKE1 Missense_Mutation p.E143D 0.17 tolerated(0.18) possibly_damaging(0.648) TCGA-YF-AA3L-01 1 117568227 117568227 C A CD101 Nonsense_Mutation p.S842* 0.15 TCGA-YF-AA3L-01 1 117568229 117568229 G A CD101 Missense_Mutation p.A843T 0.16 tolerated(0.26) benign(0.057) TCGA-YF-AA3L-01 1 117663809 117663810 TC - TRIM45 Frame_Shift_Del p.R5Kfs*12 0.08 TCGA-YF-AA3L-01 1 1421195 1421195 G T ATAD3B Missense_Mutation p.V314L 0.22 deleterious(0.03) benign(0.002) TCGA-YF-AA3L-01 1 146747884 146747884 T C CHD1L Missense_Mutation p.L501P 0.07 deleterious(0.03) benign(0.019) TCGA-YF-AA3L-01 1 155296779 155296779 G A RUSC1 Missense_Mutation p.R757H 0.11 tolerated(0.21) benign(0.002) TCGA-YF-AA3L-01 1 159558540 159558540 C T APCS 3'UTR 0.28 TCGA-YF-AA3L-01 1 159777975 159777975 G A FCRL6 Silent p.L20L 0.12 TCGA-YF-AA3L-01 1 162546750 162546750 G T UAP1 Missense_Mutation p.G155V 0.15 deleterious(0) benign(0.363) TCGA-YF-AA3L-01 1 162729669 162729669 C T DDR2 Missense_Mutation p.P252L 0.16 deleterious(0) probably_damaging(0.964) TCGA-YF-AA3L-01 1 167096183 167096183 G A DUSP27 Silent p.K605K 0.14 TCGA-YF-AA3L-01 1 169572312 169572312 C T SELP Missense_Mutation p.D553N 0.35 tolerated(0.08) possibly_damaging(0.811) TCGA-YF-AA3L-01 1 170003519 170003519 T C KIFAP3 Missense_Mutation p.K246E 0.11 tolerated(0.11) benign(0.077) TCGA-YF-AA3L-01 1 171621560 171621560 C T MYOC Silent p.Q64Q 0.07 TCGA-YF-AA3L-01 1 172579289 172579289 C G SUCO Missense_Mutation p.L1219V 0.09 tolerated(0.07) possibly_damaging(0.541) TCGA-YF-AA3L-01 1 180165815 180165815 G C QSOX1 Missense_Mutation p.Q629H 0.25 tolerated(0.28) benign(0.016) TCGA-YF-AA3L-01 1 182849729 182849729 G - DHX9 Frame_Shift_Del p.C872Vfs*45 0.28 TCGA-YF-AA3L-01 1 196682868 196682868 C T CFH Missense_Mutation p.T447I 0.30 deleterious(0.05) benign(0.059) TCGA-YF-AA3L-01 1 200974749 200974749 A T KIF21B Missense_Mutation p.I174N 0.20 deleterious(0) probably_damaging(0.994) TCGA-YF-AA3L-01 1 201351435 201351435 G C LAD1 Missense_Mutation p.S498C 0.21 deleterious(0) benign(0.413) TCGA-YF-AA3L-01 1 23637492 23637492 C A HNRNPR Missense_Mutation p.G456W 0.06 tolerated(0.12) unknown(0) TCGA-YF-AA3L-01 1 237802497 237802497 A G RYR2 Missense_Mutation p.T2371A 0.32 benign(0) TCGA-YF-AA3L-01 1 237804286 237804286 G C RYR2 Missense_Mutation p.C2402S 0.42 probably_damaging(0.999) TCGA-YF-AA3L-01 1 237947252 237947252 C T RYR2 Silent p.Y4080Y 0.17 TCGA-YF-AA3L-01 1 246021967 246021967 C - SMYD3 Frame_Shift_Del p.E303Sfs*11 0.18 TCGA-YF-AA3L-01 1 26506805 26506805 G C CNKSR1 Intron 0.33 TCGA-YF-AA3L-01 1 32198145 32198145 C A BAI2 Silent p.S1231S 0.33 TCGA-YF-AA3L-01 1 45253100 45253100 T G BEST4 Missense_Mutation p.Q64P 0.22 deleterious(0) possibly_damaging(0.545) TCGA-YF-AA3L-01 1 67833701 67833701 G A IL12RB2 Silent p.L484L 0.18 TCGA-YF-AA3L-01 1 70896062 70896062 C T CTH Missense_Mutation p.R237C 0.28 tolerated(0.06) probably_damaging(0.972) TCGA-YF-AA3L-01 1 7907817 7907817 T A UTS2 3'Flank 0.23 TCGA-YF-AA3L-01 1 86249213 86249213 C G COL24A1 Missense_Mutation p.G1417A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-YF-AA3L-01 1 99470168 99470168 C G LPPR5 Missense_Mutation p.M20I 0.22 deleterious(0.01) benign(0.214) TCGA-YF-AA3L-01 20 21314713 21314713 C T XRN2 Intron 0.21 TCGA-YF-AA3L-01 20 25059443 25059443 G A VSX1 Intron 0.19 TCGA-YF-AA3L-01 20 2842491 2842491 G A VPS16 Missense_Mutation p.D314N 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-YF-AA3L-01 20 43255097 43255097 T A ADA Missense_Mutation p.E121V 0.19 deleterious(0.01) benign(0.037) TCGA-YF-AA3L-01 20 58562663 58562663 G C CDH26 Missense_Mutation p.E331D 0.17 tolerated(0.3) benign(0.334) TCGA-YF-AA3L-01 20 61637593 61637593 C T BHLHE23 Silent p.R162R 0.50 TCGA-YF-AA3L-01 21 11049593 11049593 G T BAGE2 RNA 0.07 TCGA-YF-AA3L-01 21 30961229 30961229 G T GRIK1 Missense_Mutation p.P500H 0.21 deleterious(0) possibly_damaging(0.473) TCGA-YF-AA3L-01 21 43411507 43411507 C G ZBTB21 Missense_Mutation p.A900P 0.13 tolerated(0.28) benign(0.002) TCGA-YF-AA3L-01 22 19341607 19341607 G A HIRA Nonsense_Mutation p.Q866* 0.30 TCGA-YF-AA3L-01 22 19969209 19969209 C T ARVCF Missense_Mutation p.V141M 0.43 tolerated(0.22) benign(0.008) TCGA-YF-AA3L-01 22 23165605 23165605 A G IGLV2-8 Missense_Mutation p.Q59R 0.30 deleterious_low_confidence(0.03) benign(0.062) TCGA-YF-AA3L-01 22 23917260 23917260 G T IGLL1 Silent p.L72L 0.30 TCGA-YF-AA3L-01 22 33700373 33700373 C T LARGE Missense_Mutation p.M524I 0.37 tolerated(0.16) benign(0.173) TCGA-YF-AA3L-01 2 152490339 152490339 C A NEB Missense_Mutation p.K3081N 0.35 possibly_damaging(0.798) TCGA-YF-AA3L-01 2 178981042 178981042 A G RBM45 Silent p.E118E 0.43 TCGA-YF-AA3L-01 2 185803805 185803805 G T ZNF804A 3'UTR 0.48 TCGA-YF-AA3L-01 2 189932969 189932969 C A COL5A2 Missense_Mutation p.G429C 0.36 probably_damaging(0.999) TCGA-YF-AA3L-01 2 204735345 204735345 G A CTLA4 Missense_Mutation p.S49N 0.38 tolerated(1) benign(0.002) TCGA-YF-AA3L-01 2 206588552 206588552 T A NRP2 Silent p.S236S 0.42 TCGA-YF-AA3L-01 2 216262457 216262457 C A FN1 Missense_Mutation p.V1155F 0.82 deleterious(0.03) probably_damaging(0.967) TCGA-YF-AA3L-01 2 218750467 218750467 C T TNS1 Silent p.L247L 0.36 TCGA-YF-AA3L-01 2 230910726 230910726 G A SLC16A14 Silent p.V372V 0.43 TCGA-YF-AA3L-01 2 235951542 235951542 G C SH3BP4 Missense_Mutation p.R710T 0.22 deleterious(0.02) benign(0.013) TCGA-YF-AA3L-01 2 238484105 238484105 C A RAB17 Missense_Mutation p.D152Y 0.38 deleterious(0.01) possibly_damaging(0.461) TCGA-YF-AA3L-01 2 32703874 32703874 G C BIRC6 Missense_Mutation p.D2414H 0.22 probably_damaging(0.997) TCGA-YF-AA3L-01 2 39249777 39249777 T C SOS1 Missense_Mutation p.I598V 0.26 tolerated(0.57) benign(0.016) TCGA-YF-AA3L-01 2 54483101 54483101 T A TSPYL6 Missense_Mutation p.D63V 0.48 tolerated(0.12) benign(0.261) TCGA-YF-AA3L-01 2 56094295 56094295 C A EFEMP1 Silent p.L465L 0.20 TCGA-YF-AA3L-01 2 70933444 70933444 G A ADD2 Missense_Mutation p.R33C 0.15 deleterious(0) possibly_damaging(0.459) TCGA-YF-AA3L-01 2 73650043 73650043 C - ALMS1 Frame_Shift_Del p.Q236Kfs*14 0.28 TCGA-YF-AA3L-01 2 79312680 79312680 C A REG1B Missense_Mutation p.W124L 0.46 deleterious(0) possibly_damaging(0.819) TCGA-YF-AA3L-01 2 9570977 9570977 T C CPSF3 Silent p.Y103Y 0.44 TCGA-YF-AA3L-01 3 10379918 10379918 C T ATP2B2 Missense_Mutation p.R1121Q 0.13 tolerated(0.24) probably_damaging(0.99) TCGA-YF-AA3L-01 3 113955359 113955359 G A ZNF80 Missense_Mutation p.P188L 0.47 tolerated(0.13) possibly_damaging(0.508) TCGA-YF-AA3L-01 3 12533663 12533663 G A TSEN2 Missense_Mutation p.R73K 0.23 tolerated(0.1) benign(0.224) TCGA-YF-AA3L-01 3 12613570 12613570 C G MKRN2 Missense_Mutation p.L114V 0.22 tolerated(0.16) probably_damaging(0.916) TCGA-YF-AA3L-01 3 126202239 126202239 C T UROC1 Silent p.L681L 0.24 TCGA-YF-AA3L-01 3 129196976 129196976 T G IFT122 Missense_Mutation p.M473R 0.25 deleterious(0.02) probably_damaging(0.986) TCGA-YF-AA3L-01 3 129269651 129269651 A G H1FOO Missense_Mutation p.K269R 0.25 deleterious(0) benign(0.377) TCGA-YF-AA3L-01 3 129694847 129694847 A G TRH Missense_Mutation p.Q63R 0.10 tolerated(1) benign(0.001) TCGA-YF-AA3L-01 3 130286929 130286929 G C COL6A6 Missense_Mutation p.D628H 0.29 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 3 130305459 130305459 C A COL6A6 Silent p.L1360L 0.25 TCGA-YF-AA3L-01 3 158369974 158369974 C G GFM1 Nonsense_Mutation p.S260* 0.21 TCGA-YF-AA3L-01 3 172351160 172351160 T C NCEH1 3'UTR 0.14 TCGA-YF-AA3L-01 3 184090547 184090547 C G THPO Silent p.P272P 0.22 TCGA-YF-AA3L-01 3 195538607 195538607 C T MUC4 Missense_Mutation p.G28R 0.16 unknown(0) TCGA-YF-AA3L-01 3 25470112 25470112 A T RARB 5'UTR 0.20 TCGA-YF-AA3L-01 3 28476711 28476711 G T ZCWPW2 Missense_Mutation p.R148I 0.12 deleterious(0) possibly_damaging(0.879) TCGA-YF-AA3L-01 3 33481351 33481351 C T UBP1 5'UTR 0.21 TCGA-YF-AA3L-01 3 36897260 36897260 C T TRANK1 Missense_Mutation p.R1274Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-YF-AA3L-01 3 39227496 39227496 G A XIRP1 Silent p.P1147P 0.24 TCGA-YF-AA3L-01 3 44763755 44763755 T G ZNF502 Missense_Mutation p.H482Q 0.29 tolerated(1) benign(0.032) TCGA-YF-AA3L-01 3 46010025 46010025 G A FYCO1 Silent p.V267V 0.32 TCGA-YF-AA3L-01 3 47950538 47950538 C G MAP4 Intron 0.18 TCGA-YF-AA3L-01 3 49200362 49200362 C A CCDC71 Missense_Mutation p.R427L 0.14 deleterious(0.03) unknown(0) TCGA-YF-AA3L-01 3 52088365 52088366 CT - DUSP7 Frame_Shift_Del p.E181Vfs*3 0.30 TCGA-YF-AA3L-01 3 54952707 54952707 G A LRTM1 Missense_Mutation p.L273F 0.31 tolerated(0.72) benign(0.006) TCGA-YF-AA3L-01 3 87276660 87276660 G A CHMP2B 5'UTR 0.22 TCGA-YF-AA3L-01 3 99513512 99513512 C A COL8A1 Missense_Mutation p.P256H 0.21 tolerated(0.46) unknown(0) TCGA-YF-AA3L-01 4 107846960 107846960 A G DKK2 Silent p.N123N 0.21 TCGA-YF-AA3L-01 4 110222886 110222886 A G COL25A1 Missense_Mutation p.L97P 0.10 deleterious(0) unknown(0) TCGA-YF-AA3L-01 4 110685755 110685755 T A CFI Silent p.I140I 0.15 TCGA-YF-AA3L-01 4 110763785 110763785 A C RRH Missense_Mutation p.Y294S 0.21 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 4 114179276 114179276 A G ANK2 Missense_Mutation p.Y420C 0.10 probably_damaging(0.967) TCGA-YF-AA3L-01 4 115589295 115589295 A G UGT8 Missense_Mutation p.E366G 0.33 deleterious(0) probably_damaging(0.982) TCGA-YF-AA3L-01 4 122801035 122801035 T A TRPC3 Splice_Site p.X875_splice 0.11 TCGA-YF-AA3L-01 4 123222535 123222535 C G KIAA1109 Missense_Mutation p.L3157V 0.10 benign(0.327) TCGA-YF-AA3L-01 4 128694575 128694575 T C SLC25A31 Missense_Mutation p.L265S 0.12 deleterious(0.02) benign(0.044) TCGA-YF-AA3L-01 4 144135447 144135447 A C USP38 Missense_Mutation p.K773T 0.06 tolerated(0.07) benign(0.275) TCGA-YF-AA3L-01 4 147796039 147796039 G A TTC29 Nonsense_Mutation p.Q210* 0.08 TCGA-YF-AA3L-01 4 148594962 148594962 G A PRMT10 Silent p.F134F 0.23 TCGA-YF-AA3L-01 4 152679950 152679950 C G PET112 Missense_Mutation p.D101H 0.17 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 4 175899081 175899081 C T ADAM29 Missense_Mutation p.S802F 0.21 tolerated_low_confidence(0.11) unknown(0) TCGA-YF-AA3L-01 4 178352820 178352823 TTTC - AGA 3'UTR 0.35 TCGA-YF-AA3L-01 4 183267866 183267866 T G TENM3 Missense_Mutation p.F99V 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.637) TCGA-YF-AA3L-01 4 39868597 39868597 C T PDS5A Silent p.L842L 0.12 TCGA-YF-AA3L-01 4 419824 419825 TC - ABCA11P RNA 0.25 TCGA-YF-AA3L-01 4 42445669 42445669 C T ATP8A1 Nonsense_Mutation p.W1012* 0.17 TCGA-YF-AA3L-01 4 5333027 5333027 A T STK32B Missense_Mutation p.Q114L 0.23 deleterious(0) probably_damaging(0.997) TCGA-YF-AA3L-01 4 5399961 5399961 G T STK32B Silent p.L154L 0.15 TCGA-YF-AA3L-01 4 55984846 55984846 C T KDR Missense_Mutation p.G95R 0.16 deleterious(0) possibly_damaging(0.669) TCGA-YF-AA3L-01 4 74318173 74318173 C T AFP Missense_Mutation p.P495L 0.25 deleterious(0.01) possibly_damaging(0.719) TCGA-YF-AA3L-01 4 76943099 76943099 G C CXCL10 Missense_Mutation p.S94C 0.09 deleterious(0) possibly_damaging(0.784) TCGA-YF-AA3L-01 4 91230690 91230690 A T CCSER1 Missense_Mutation p.I419L 0.13 tolerated_low_confidence(0.12) probably_damaging(0.984) TCGA-YF-AA3L-01 5 112903519 112903519 G T YTHDC2 Missense_Mutation p.A1073S 0.47 tolerated(0.14) benign(0.082) TCGA-YF-AA3L-01 5 112903520 112903520 C G YTHDC2 Missense_Mutation p.A1073G 0.49 deleterious(0.03) benign(0.443) TCGA-YF-AA3L-01 5 123982616 123982616 G C ZNF608 Nonsense_Mutation p.S1154* 0.43 TCGA-YF-AA3L-01 5 124036744 124036744 C A ZNF608 Silent p.V375V 0.48 TCGA-YF-AA3L-01 5 132197525 132197525 G T GDF9 Missense_Mutation p.P374Q 0.41 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 5 140563498 140563498 C A PCDHB16 Missense_Mutation p.S455Y 0.35 deleterious_low_confidence(0) benign(0.369) TCGA-YF-AA3L-01 5 141050085 141050085 G A ARAP3 Missense_Mutation p.R701W 0.32 deleterious(0) probably_damaging(0.996) TCGA-YF-AA3L-01 5 141244390 141244390 G A PCDH1 Silent p.N502N 0.40 TCGA-YF-AA3L-01 5 154396571 154396571 C G KIF4B Missense_Mutation p.S1051C 0.43 deleterious(0.01) probably_damaging(0.927) TCGA-YF-AA3L-01 5 161309624 161309624 T G GABRA1 Missense_Mutation p.V207G 0.41 tolerated(0.12) probably_damaging(0.995) TCGA-YF-AA3L-01 5 169680185 169680185 C T LCP2 Missense_Mutation p.G395S 0.30 tolerated(0.72) benign(0.009) TCGA-YF-AA3L-01 5 176018296 176018296 C A CDHR2 Missense_Mutation p.P1209T 0.23 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 5 179201936 179201936 C T MAML1 3'UTR 0.33 TCGA-YF-AA3L-01 5 179762833 179762833 C T GFPT2 Missense_Mutation p.G112D 0.52 tolerated(0.63) benign(0) TCGA-YF-AA3L-01 5 34043075 34043075 G A C1QTNF3 Silent p.S52S 0.24 TCGA-YF-AA3L-01 5 434672 434672 G C AHRR Missense_Mutation p.R628T 0.27 deleterious(0.01) benign(0.246) TCGA-YF-AA3L-01 5 63256509 63256509 C A HTR1A Silent p.T346T 0.38 TCGA-YF-AA3L-01 5 63256823 63256823 G T HTR1A Missense_Mutation p.H242N 0.44 tolerated(0.59) benign(0.007) TCGA-YF-AA3L-01 6 100061959 100061959 A G PRDM13 Missense_Mutation p.K483R 0.24 tolerated(0.18) possibly_damaging(0.664) TCGA-YF-AA3L-01 6 100988255 100988255 T C ASCC3 Silent p.E1853E 0.33 TCGA-YF-AA3L-01 6 101847096 101847096 C T GRIK2 5'UTR 0.19 TCGA-YF-AA3L-01 6 102247604 102247604 T A GRIK2 Missense_Mutation p.L345M 0.35 deleterious(0.02) probably_damaging(0.972) TCGA-YF-AA3L-01 6 116833492 116833492 G C TRAPPC3L Intron 0.55 TCGA-YF-AA3L-01 6 133013504 133013504 C G VNN1 Missense_Mutation p.G349A 0.25 tolerated(0.41) benign(0.031) TCGA-YF-AA3L-01 6 133095418 133095418 A G SLC18B1 Missense_Mutation p.L311S 0.29 deleterious(0.01) possibly_damaging(0.493) TCGA-YF-AA3L-01 6 134210480 134210480 G T TCF21 5'UTR 0.29 TCGA-YF-AA3L-01 6 143823086 143823087 AG - FUCA2 Frame_Shift_Del p.T379Sfs*12 0.33 TCGA-YF-AA3L-01 6 157505529 157505529 G A ARID1B Silent p.G1170G 0.22 TCGA-YF-AA3L-01 6 160998207 160998207 G A LPA Missense_Mutation p.P1531L 0.20 deleterious(0) probably_damaging(0.998) TCGA-YF-AA3L-01 6 17675473 17675473 C T NUP153 Missense_Mutation p.G237E 0.24 deleterious(0) probably_damaging(0.977) TCGA-YF-AA3L-01 6 25861857 25861857 A G SLC17A3 Missense_Mutation p.L207S 0.26 tolerated(0.4) benign(0.139) TCGA-YF-AA3L-01 6 26252298 26252298 C G HIST1H2BH 3'UTR 0.32 TCGA-YF-AA3L-01 6 31828351 31828351 C A NEU1 Silent p.G221G 0.26 TCGA-YF-AA3L-01 6 31868953 31868956 ACTT - ZBTB12 Frame_Shift_Del p.K43Ffs*21 0.27 TCGA-YF-AA3L-01 6 36930758 36930758 A T PI16 Missense_Mutation p.T214S 0.57 tolerated(0.06) benign(0.05) TCGA-YF-AA3L-01 6 39159495 39159495 C A KCNK5 Missense_Mutation p.R224L 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-YF-AA3L-01 6 39272286 39272286 C A KCNK17 Silent p.L166L 0.29 TCGA-YF-AA3L-01 6 40359616 40359616 T C LRFN2 3'UTR 0.36 TCGA-YF-AA3L-01 6 41767574 41767574 C A USP49 Missense_Mutation p.R555I 0.30 deleterious(0.02) probably_damaging(1) TCGA-YF-AA3L-01 6 42146608 42146608 C T GUCA1A Silent p.F140F 0.33 TCGA-YF-AA3L-01 6 42227198 42227198 C T TRERF1 Silent p.P716P 0.19 TCGA-YF-AA3L-01 6 7248956 7248956 A G RREB1 Missense_Mutation p.N1662D 0.21 tolerated(0.63) benign(0.038) TCGA-YF-AA3L-01 6 75823318 75823318 G A COL12A1 Missense_Mutation p.P2614S 0.32 probably_damaging(0.998) TCGA-YF-AA3L-01 6 90360540 90360540 C G MDN1 Missense_Mutation p.Q5314H 0.13 unknown(0) TCGA-YF-AA3L-01 6 96971031 96971031 G A UFL1 Silent p.E29E 0.32 TCGA-YF-AA3L-01 6 99797291 99797291 G C FAXC 5'UTR 0.62 TCGA-YF-AA3L-01 6 99848368 99848368 T - PNISR 3'UTR 0.25 TCGA-YF-AA3L-01 7 100679224 100679224 T C MUC17 Silent p.P1509P 0.46 TCGA-YF-AA3L-01 7 112115551 112115551 G A IFRD1 Missense_Mutation p.A445T 0.22 tolerated(0.2) benign(0.009) TCGA-YF-AA3L-01 7 114330029 114330029 C T FOXP2 3'UTR 0.14 TCGA-YF-AA3L-01 7 116403161 116403161 C A MET Missense_Mutation p.Q826K 0.16 tolerated(0.94) probably_damaging(0.985) TCGA-YF-AA3L-01 7 124503532 124503532 C T POT1 Missense_Mutation p.A140T 0.24 deleterious(0) possibly_damaging(0.655) TCGA-YF-AA3L-01 7 128489396 128489396 G A FLNC Missense_Mutation p.G1655S 0.16 deleterious(0.03) probably_damaging(0.99) TCGA-YF-AA3L-01 7 130007781 130007781 A G CPA5 Missense_Mutation p.Y358C 0.28 deleterious(0.01) possibly_damaging(0.621) TCGA-YF-AA3L-01 7 131878938 131878938 C A PLXNA4 Missense_Mutation p.Q913H 0.25 deleterious(0) probably_damaging(0.992) TCGA-YF-AA3L-01 7 132192459 132192459 C T PLXNA4 Missense_Mutation p.D332N 0.20 deleterious(0.02) probably_damaging(0.936) TCGA-YF-AA3L-01 7 13975504 13975504 G A ETV1 Missense_Mutation p.P128L 0.50 deleterious(0.04) possibly_damaging(0.87) TCGA-YF-AA3L-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.15 deleterious(0) probably_damaging(0.967) TCGA-YF-AA3L-01 7 142168396 142168396 G A TRBV5-4 Silent p.L109L 0.24 TCGA-YF-AA3L-01 7 142985499 142985499 T G CASP2 5'UTR 0.38 TCGA-YF-AA3L-01 7 150034005 150034005 C T LRRC61 Nonsense_Mutation p.Q19* 0.27 TCGA-YF-AA3L-01 7 150163798 150163798 G T GIMAP8 Missense_Mutation p.Q4H 0.19 tolerated(0.06) possibly_damaging(0.811) TCGA-YF-AA3L-01 7 150417584 150417584 T C GIMAP1 Silent p.D164D 0.17 TCGA-YF-AA3L-01 7 150936536 150936536 C G SMARCD3 Missense_Mutation p.E448D 0.24 tolerated(0.44) benign(0.007) TCGA-YF-AA3L-01 7 151680135 151680135 G A GALNTL5 Missense_Mutation p.E145K 0.20 deleterious(0) possibly_damaging(0.71) TCGA-YF-AA3L-01 7 155567710 155567710 T G RBM33 Missense_Mutation p.I1163R 0.26 deleterious(0) unknown(0) TCGA-YF-AA3L-01 7 20698699 20698699 G A ABCB5 Intron 0.24 TCGA-YF-AA3L-01 7 21657295 21657295 G A DNAH11 Missense_Mutation p.G1390D 0.14 benign(0.185) TCGA-YF-AA3L-01 7 21939644 21939644 A G DNAH11 Silent p.K4410K 0.12 TCGA-YF-AA3L-01 7 23207528 23207528 G T KLHL7 Silent p.L417L 0.28 TCGA-YF-AA3L-01 7 2473630 2473630 C G CHST12 3'UTR 0.21 TCGA-YF-AA3L-01 7 33014899 33014899 G T FKBP9 Missense_Mutation p.S158I 0.26 tolerated(0.22) benign(0.025) TCGA-YF-AA3L-01 7 33217181 33217181 T C BBS9 Silent p.Y140Y 0.24 TCGA-YF-AA3L-01 7 38398204 38398204 G C TRGV3 Missense_Mutation p.T88S 0.19 tolerated(0.2) benign(0.019) TCGA-YF-AA3L-01 7 4002313 4002313 G T SDK1 Missense_Mutation p.W420L 0.16 deleterious(0) probably_damaging(0.941) TCGA-YF-AA3L-01 7 44186118 44186118 G T GCK Silent p.S322S 0.18 TCGA-YF-AA3L-01 7 44924313 44924313 C T PURB Missense_Mutation p.G212E 0.29 tolerated_low_confidence(0.72) possibly_damaging(0.526) TCGA-YF-AA3L-01 7 57188021 57188021 G T ZNF479 Missense_Mutation p.N367K 0.25 tolerated(0.22) benign(0.13) TCGA-YF-AA3L-01 7 5781006 5781006 C G RNF216 Missense_Mutation p.E214D 0.07 tolerated_low_confidence(0.3) benign(0.015) TCGA-YF-AA3L-01 7 73010732 73010732 G T MLXIPL Missense_Mutation p.Q634K 0.12 tolerated(0.08) benign(0.138) TCGA-YF-AA3L-01 7 73474271 73474271 T C ELN Silent p.G490G 0.23 TCGA-YF-AA3L-01 7 84644381 84644381 G A SEMA3D Missense_Mutation p.S566F 0.22 deleterious(0) probably_damaging(0.999) TCGA-YF-AA3L-01 7 86813796 86813796 C T DMTF1 Nonsense_Mutation p.Q302* 0.26 TCGA-YF-AA3L-01 7 89861931 89861932 - A STEAP2 Frame_Shift_Ins p.M490Nfs*37 0.15 TCGA-YF-AA3L-01 7 91632048 91632049 AG - AKAP9 Frame_Shift_Del p.E940Tfs*6 0.17 TCGA-YF-AA3L-01 7 94214786 94214786 C T SGCE 3'UTR 0.23 TCGA-YF-AA3L-01 7 95221903 95221903 A G PDK4 Missense_Mutation p.I179T 0.23 deleterious(0.02) possibly_damaging(0.705) TCGA-YF-AA3L-01 7 97937315 97937315 T C BAIAP2L1 Intron 0.27 TCGA-YF-AA3L-01 8 103324700 103324700 T C UBR5 Missense_Mutation p.D674G 0.27 deleterious(0) probably_damaging(0.98) TCGA-YF-AA3L-01 8 110477197 110477197 T C PKHD1L1 Silent p.H2712H 0.44 TCGA-YF-AA3L-01 8 131072893 131072893 C G ASAP1 Missense_Mutation p.E1042Q 0.27 tolerated(0.21) probably_damaging(0.958) TCGA-YF-AA3L-01 8 1876769 1876769 G A ARHGEF10 Silent p.V958V 0.14 TCGA-YF-AA3L-01 8 2005857 2005857 C A MYOM2 Silent p.L173L 0.36 TCGA-YF-AA3L-01 8 21978627 21978627 T A HR Missense_Mutation p.H773L 0.15 deleterious(0.01) possibly_damaging(0.691) TCGA-YF-AA3L-01 8 41122685 41122685 A C SFRP1 3'UTR 0.40 TCGA-YF-AA3L-01 8 55533959 55533959 G A RP1 Missense_Mutation p.A145T 0.23 tolerated(0.39) benign(0.017) TCGA-YF-AA3L-01 8 70594549 70594549 A T SLCO5A1 Missense_Mutation p.L551Q 0.18 deleterious(0) probably_damaging(0.99) TCGA-YF-AA3L-01 8 70667698 70667698 T C SLCO5A1 Missense_Mutation p.K407E 0.25 tolerated(0.64) benign(0.006) TCGA-YF-AA3L-01 8 95850690 95850690 G C INTS8 Splice_Site p.X288_splice 0.23 TCGA-YF-AA3L-01 8 95862308 95862308 A G INTS8 Missense_Mutation p.Y499C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-YF-AA3L-01 9 105767894 105767894 A T CYLC2 Silent p.A327A 0.33 TCGA-YF-AA3L-01 9 114480550 114480551 TC - C9orf84 Frame_Shift_Del p.E653Nfs*16 0.30 TCGA-YF-AA3L-01 9 117848389 117848389 G T TNC Missense_Mutation p.R541S 0.33 deleterious(0) possibly_damaging(0.818) TCGA-YF-AA3L-01 9 123939587 123939587 C G CNTRL 3'UTR 0.18 TCGA-YF-AA3L-01 9 134365953 134365953 G T PRRC2B Intron 0.25 TCGA-YF-AA3L-01 9 14619086 14619086 G - ZDHHC21 Frame_Shift_Del p.R226Efs*61 0.32 TCGA-YF-AA3L-01 9 27202918 27202918 T C TEK Silent p.I670I 0.33 TCGA-YF-AA3L-01 9 27297111 27297111 T A EQTN 5'UTR 0.25 TCGA-YF-AA3L-01 9 32634266 32634266 C - TAF1L Frame_Shift_Del p.E438Rfs*27 0.25 TCGA-YF-AA3L-01 9 35754168 35754168 C G MSMP 5'UTR 0.24 TCGA-YF-AA3L-01 9 37503044 37503044 A G POLR1E Missense_Mutation p.M369V 0.26 tolerated(0.05) benign(0.005) TCGA-YF-AA3L-01 9 84532647 84532647 C T SPATA31D5P RNA 0.48 TCGA-YF-AA3L-01 9 8471047 8471047 C T PTPRD Missense_Mutation p.R1151H 0.26 deleterious(0.02) benign(0.001) TCGA-YF-AA3L-01 9 88633681 88633681 A T NAA35 Missense_Mutation p.K661M 0.25 deleterious(0) probably_damaging(0.984) TCGA-YF-AA3L-01 9 95063854 95063854 C G NOL8 Missense_Mutation p.D1052H 0.26 deleterious(0.02) benign(0.299) TCGA-YF-AA3L-01 X 100497446 100497446 T A DRP2 Missense_Mutation p.W321R 0.23 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 X 111697817 111697817 A G ZCCHC16 5'UTR 0.44 TCGA-YF-AA3L-01 X 11783735 11783735 G A MSL3 Missense_Mutation p.R353H 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-YF-AA3L-01 X 119694179 119694179 G A CUL4B Silent p.D123D 0.23 TCGA-YF-AA3L-01 X 122318437 122318437 T C GRIA3 Missense_Mutation p.F17S 0.31 tolerated(0.09) benign(0) TCGA-YF-AA3L-01 X 125685668 125685668 A T DCAF12L1 Missense_Mutation p.D308E 0.31 tolerated(1) benign(0.001) TCGA-YF-AA3L-01 X 129147471 129147471 T C BCORL1 Silent p.V241V 0.27 TCGA-YF-AA3L-01 X 132445452 132445452 C A GPC4 Splice_Site p.X238_splice 0.28 TCGA-YF-AA3L-01 X 134166690 134166690 G A FAM127A Missense_Mutation p.D93N 0.07 tolerated(0.48) benign(0.082) TCGA-YF-AA3L-01 X 15332510 15332510 A G ASB11 Intron 0.18 TCGA-YF-AA3L-01 X 154018226 154018226 C T MPP1 Intron 0.20 TCGA-YF-AA3L-01 X 154124391 154124391 C A F8 Missense_Mutation p.K2130N 0.36 tolerated(0.07) possibly_damaging(0.733) TCGA-YF-AA3L-01 X 16876880 16876880 G T RBBP7 Missense_Mutation p.Q178K 0.20 deleterious(0.01) possibly_damaging(0.711) TCGA-YF-AA3L-01 X 21534645 21534645 G C CNKSR2 Missense_Mutation p.D285H 0.20 deleterious(0) possibly_damaging(0.628) TCGA-YF-AA3L-01 X 23353089 23353089 G A PTCHD1 Missense_Mutation p.V33M 0.20 tolerated(0.06) benign(0.131) TCGA-YF-AA3L-01 X 27840024 27840024 A G MAGEB10 Missense_Mutation p.T201A 0.25 deleterious(0) probably_damaging(0.916) TCGA-YF-AA3L-01 X 2795275 2795275 A C GYG2 Missense_Mutation p.E424A 0.12 tolerated(0.1) benign(0.007) TCGA-YF-AA3L-01 X 34961900 34961900 A T FAM47B Missense_Mutation p.S318C 0.24 deleterious(0.03) possibly_damaging(0.843) TCGA-YF-AA3L-01 X 41416283 41416283 A G CASK Splice_Site p.X602_splice 0.16 TCGA-YF-AA3L-01 X 41524686 41524686 A G CASK Silent p.H184H 0.26 TCGA-YF-AA3L-01 X 48976104 48976104 C T GPKOW Missense_Mutation p.G174S 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-YF-AA3L-01 X 54971912 54971912 C T PFKFB1 Missense_Mutation p.R353Q 0.16 probably_damaging(1) TCGA-YF-AA3L-01 X 64718971 64718971 G A ZC3H12B Missense_Mutation p.D281N 0.21 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 X 70341532 70341532 C G MED12 Missense_Mutation p.Q323E 0.34 possibly_damaging(0.707) TCGA-YF-AA3L-01 X 71426416 71426416 G T ERCC6L Missense_Mutation p.P734H 0.26 deleterious(0.04) benign(0.004) TCGA-YF-AA3L-01 X 80377115 80377115 G C HMGN5 5'UTR 0.24 TCGA-YF-AA3L-01 X 91131909 91131909 G C PCDH11X Missense_Mutation p.G224R 0.24 deleterious(0) probably_damaging(1) TCGA-YF-AA3L-01 X 99551482 99551482 G A PCDH19 Silent p.S1080S 0.35 TCGA-YF-AA3M-01 10 28824566 28824566 C T WAC Missense_Mutation p.P52S 0.15 tolerated(0.25) benign(0.32) TCGA-YF-AA3M-01 10 30317460 30317460 T C KIAA1462 Silent p.R539R 0.45 TCGA-YF-AA3M-01 10 43326463 43326463 G A BMS1 Silent p.K1256K 0.42 TCGA-YF-AA3M-01 10 95720198 95720198 C T PIPSL RNA 0.24 TCGA-YF-AA3M-01 11 1017207 1017207 G A MUC6 Missense_Mutation p.T1865I 0.11 probably_damaging(0.979) TCGA-YF-AA3M-01 11 10792179 10792179 G A CTR9 Missense_Mutation p.R791K 0.10 tolerated(0.85) benign(0.332) TCGA-YF-AA3M-01 11 119228944 119228944 A C USP2 Missense_Mutation p.L419R 0.13 deleterious(0.01) probably_damaging(1) TCGA-YF-AA3M-01 11 121340814 121340814 G A SORL1 Silent p.A128A 0.26 TCGA-YF-AA3M-01 11 123810816 123810816 C T OR4D5 Nonsense_Mutation p.Q165* 0.09 TCGA-YF-AA3M-01 11 1271407 1271407 T C MUC5B Missense_Mutation p.S4433P 0.10 benign(0.069) TCGA-YF-AA3M-01 11 131240658 131240658 A C NTM 5'UTR 0.12 TCGA-YF-AA3M-01 11 17793575 17793575 G A KCNC1 Missense_Mutation p.V312I 0.20 tolerated(0.31) possibly_damaging(0.823) TCGA-YF-AA3M-01 11 19206586 19206586 G T CSRP3 Missense_Mutation p.H141N 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-YF-AA3M-01 11 19206587 19206587 C G CSRP3 Missense_Mutation p.W140C 0.16 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 11 20939763 20939763 G T NELL1 Silent p.P213P 0.29 TCGA-YF-AA3M-01 11 30900155 30900155 C A DCDC1 Silent p.L1776L 0.22 TCGA-YF-AA3M-01 11 30902828 30902828 T G DCDC1 Missense_Mutation p.K1701Q 0.31 tolerated(0.2) possibly_damaging(0.607) TCGA-YF-AA3M-01 11 46637624 46637624 G A HARBI1 Missense_Mutation p.A55V 0.38 tolerated(0.25) benign(0.023) TCGA-YF-AA3M-01 11 58893358 58893358 C T FAM111B Silent p.N596N 0.45 TCGA-YF-AA3M-01 11 61135254 61135254 G A TMEM138 Intron 0.16 TCGA-YF-AA3M-01 11 65268354 65268354 G A MALAT1 RNA 0.55 TCGA-YF-AA3M-01 11 66332460 66332460 C T CTSF Missense_Mutation p.D355N 0.15 tolerated(0.19) possibly_damaging(0.466) TCGA-YF-AA3M-01 11 67052451 67052451 C T ADRBK1 Silent p.A596A 0.30 TCGA-YF-AA3M-01 11 67223676 67223676 C T CABP4 Silent p.P128P 0.47 TCGA-YF-AA3M-01 11 68525119 68525119 T C CPT1A Missense_Mutation p.K772R 0.60 tolerated(0.25) benign(0.001) TCGA-YF-AA3M-01 12 109895442 109895442 A T KCTD10 Missense_Mutation p.Y174N 0.46 deleterious(0) probably_damaging(0.998) TCGA-YF-AA3M-01 12 112699228 112699228 T C HECTD4 Silent p.L772L 0.24 TCGA-YF-AA3M-01 12 132562280 132562280 A G EP400 3'UTR 0.76 TCGA-YF-AA3M-01 12 39154682 39154682 T C CPNE8 Missense_Mutation p.K230R 0.28 tolerated(0.1) probably_damaging(0.998) TCGA-YF-AA3M-01 12 48359980 48359980 G T TMEM106C Missense_Mutation p.V174F 0.13 deleterious(0) possibly_damaging(0.578) TCGA-YF-AA3M-01 12 53045805 53045805 G A KRT2 Missense_Mutation p.S41F 0.12 deleterious(0) unknown(0) TCGA-YF-AA3M-01 12 56087054 56087054 G C ITGA7 Silent p.L865L 0.31 TCGA-YF-AA3M-01 12 56495375 56495375 G A ERBB3 Missense_Mutation p.E1189K 0.24 tolerated(0.91) benign(0.119) TCGA-YF-AA3M-01 12 59268026 59268026 G T LRIG3 Missense_Mutation p.P976T 0.49 tolerated_low_confidence(0.22) benign(0.11) TCGA-YF-AA3M-01 12 6981997 6981997 G C SPSB2 Silent p.L23L 0.17 TCGA-YF-AA3M-01 12 6982067 6982067 G C SPSB2 5'UTR 0.42 TCGA-YF-AA3M-01 12 72338244 72338244 G T TPH2 Missense_Mutation p.W142C 0.35 tolerated(0.13) possibly_damaging(0.907) TCGA-YF-AA3M-01 13 102047609 102047609 G A NALCN Silent p.F72F 0.11 TCGA-YF-AA3M-01 13 115064375 115064375 G C UPF3A Missense_Mutation p.E303Q 0.21 tolerated(0.08) probably_damaging(0.928) TCGA-YF-AA3M-01 13 20224376 20224376 G A MPHOSPH8 Missense_Mutation p.V518M 0.63 tolerated(0.15) benign(0.004) TCGA-YF-AA3M-01 13 41556139 41556139 C T ELF1 Missense_Mutation p.V18I 0.25 tolerated(0.42) benign(0.02) TCGA-YF-AA3M-01 13 48669145 48669145 T C MED4 Missense_Mutation p.N24D 0.83 tolerated(0.57) benign(0.002) TCGA-YF-AA3M-01 13 88328426 88328426 T C SLITRK5 Silent p.D261D 0.23 TCGA-YF-AA3M-01 14 104206365 104206365 T C PPP1R13B Silent p.L796L 0.87 TCGA-YF-AA3M-01 14 104206432 104206432 G - PPP1R13B Frame_Shift_Del p.P774Lfs*97 0.50 TCGA-YF-AA3M-01 14 19377743 19377743 T C OR11H12 Silent p.Y50Y 0.18 TCGA-YF-AA3M-01 14 47120594 47120594 G A RPL10L Nonsense_Mutation p.R116* 0.07 TCGA-YF-AA3M-01 14 66136030 66136030 C T FUT8 Nonsense_Mutation p.Q223* 0.15 TCGA-YF-AA3M-01 14 66188490 66188490 C T FUT8 Intron 0.70 TCGA-YF-AA3M-01 14 89343804 89343804 A G TTC8 3'UTR 0.15 TCGA-YF-AA3M-01 14 95053722 95053722 G A SERPINA5 Missense_Mutation p.C8Y 0.16 deleterious(0.04) possibly_damaging(0.754) TCGA-YF-AA3M-01 15 20876526 20876526 T C NBEAP1 RNA 0.09 TCGA-YF-AA3M-01 15 42067506 42067506 G A MAPKBP1 Silent p.R11R 0.50 TCGA-YF-AA3M-01 15 44918692 44918692 C T SPG11 Missense_Mutation p.S694N 0.47 tolerated(0.66) benign(0.001) TCGA-YF-AA3M-01 16 11370006 11370006 G A PRM2 Silent p.C74C 0.45 TCGA-YF-AA3M-01 16 15126720 15126720 A G PDXDC1 Missense_Mutation p.Y525C 0.23 deleterious(0) probably_damaging(0.982) TCGA-YF-AA3M-01 16 1825954 1825954 C G EME2 Silent p.V312V 0.50 TCGA-YF-AA3M-01 16 2150177 2150177 C A PKD1 Silent p.V3234V 0.31 TCGA-YF-AA3M-01 16 30409410 30409410 G A ZNF48 Missense_Mutation p.C280Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-YF-AA3M-01 16 31201100 31201100 A G FUS Missense_Mutation p.I351V 0.44 tolerated(0.51) benign(0.041) TCGA-YF-AA3M-01 16 57994749 57994749 A C CNGB1 Missense_Mutation p.S177A 0.33 tolerated_low_confidence(0.19) probably_damaging(0.935) TCGA-YF-AA3M-01 16 67576026 67576026 G A FAM65A Missense_Mutation p.R466Q 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-YF-AA3M-01 16 88945773 88945773 C G CBFA2T3 Missense_Mutation p.E523Q 0.52 deleterious(0.02) probably_damaging(0.99) TCGA-YF-AA3M-01 17 16004808 16004810 CGG AA NCOR1 Frame_Shift_Del p.P815Lfs*12 0.80 TCGA-YF-AA3M-01 17 27049770 27049770 C T RPL23A Missense_Mutation p.P80L 0.10 deleterious(0.05) possibly_damaging(0.852) TCGA-YF-AA3M-01 17 40322302 40322302 C T KCNH4 Missense_Mutation p.G405S 0.42 tolerated(0.23) benign(0.032) TCGA-YF-AA3M-01 17 46670879 46670879 C A HOXB5 Missense_Mutation p.V56F 0.27 deleterious(0.02) benign(0.098) TCGA-YF-AA3M-01 17 47236577 47236577 T C B4GALNT2 Missense_Mutation p.I286T 0.51 tolerated(0.51) benign(0.004) TCGA-YF-AA3M-01 17 56492721 56492721 G A RNF43 Missense_Mutation p.A73V 0.20 deleterious(0) possibly_damaging(0.71) TCGA-YF-AA3M-01 17 57644014 57644014 G A DHX40 Missense_Mutation p.G47R 0.44 tolerated(0.54) benign(0.065) TCGA-YF-AA3M-01 17 72340420 72340420 G T KIF19 Missense_Mutation p.R172L 0.17 deleterious(0.03) probably_damaging(0.946) TCGA-YF-AA3M-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.73 deleterious(0) probably_damaging(0.947) TCGA-YF-AA3M-01 17 79567371 79567371 C G NPLOC4 Missense_Mutation p.R306P 0.15 deleterious(0.02) probably_damaging(0.933) TCGA-YF-AA3M-01 17 79657709 79657709 A G HGS Silent p.P158P 0.30 TCGA-YF-AA3M-01 17 79914810 79914810 C T NOTUM Missense_Mutation p.C279Y 0.26 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 17 8076729 8076729 C G TMEM107 3'Flank 0.19 TCGA-YF-AA3M-01 18 178985 178985 C T USP14 Missense_Mutation p.S83L 0.30 tolerated(0.3) benign(0.004) TCGA-YF-AA3M-01 18 28586890 28586890 C T DSC3 Missense_Mutation p.S624N 0.30 tolerated(0.36) benign(0.021) TCGA-YF-AA3M-01 18 30969579 30969579 G A CCDC178 Nonsense_Mutation p.Q45* 0.16 TCGA-YF-AA3M-01 18 9254672 9254672 A G ANKRD12 Silent p.K469K 0.15 TCGA-YF-AA3M-01 18 9254968 9254968 C A ANKRD12 Nonsense_Mutation p.S568* 0.15 TCGA-YF-AA3M-01 18 9256862 9256862 C G ANKRD12 Silent p.L1199L 0.19 TCGA-YF-AA3M-01 18 9257198 9257198 C G ANKRD12 Missense_Mutation p.S1311R 0.20 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-YF-AA3M-01 18 9257318 9257320 CTC TT ANKRD12 Frame_Shift_Del p.S1352* 0.14 TCGA-YF-AA3M-01 18 9257413 9257413 C T ANKRD12 Missense_Mutation p.S1383L 0.19 tolerated_low_confidence(0.06) benign(0.003) TCGA-YF-AA3M-01 19 12951847 12951847 C - MAST1 Frame_Shift_Del p.A74Pfs*103 0.43 TCGA-YF-AA3M-01 19 17416678 17416678 G A MRPL34 5'UTR 0.37 TCGA-YF-AA3M-01 19 19231584 19231584 G C TMEM161A Silent p.L392L 0.20 TCGA-YF-AA3M-01 19 20027397 20027397 C T ZNF93 Silent p.I53I 0.17 TCGA-YF-AA3M-01 19 36003646 36003646 C T DMKN Missense_Mutation p.G158E 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-YF-AA3M-01 19 36036591 36036591 G C TMEM147 5'UTR 0.19 TCGA-YF-AA3M-01 19 36036592 36036592 G T TMEM147 5'UTR 0.18 TCGA-YF-AA3M-01 19 37210291 37210291 G A ZNF567 Missense_Mutation p.R191K 0.71 tolerated(1) benign(0.001) TCGA-YF-AA3M-01 19 39321993 39321993 G C ECH1 Silent p.L72L 0.20 TCGA-YF-AA3M-01 19 41257379 41257379 G A SNRPA Silent p.K22K 0.70 TCGA-YF-AA3M-01 19 47585484 47585484 G C ZC3H4 Missense_Mutation p.I429M 0.11 unknown(0) TCGA-YF-AA3M-01 19 48866578 48866578 G A TMEM143 Silent p.S78S 0.12 TCGA-YF-AA3M-01 19 49244222 49244222 T C IZUMO1 Silent p.G332G 0.12 TCGA-YF-AA3M-01 19 51671510 51671510 T G CTD-3187F8.14 Intron 0.16 TCGA-YF-AA3M-01 19 53302773 53302773 G C ZNF28 3'UTR 0.11 TCGA-YF-AA3M-01 19 54261513 54261513 C A MIR1283-2 RNA 0.16 TCGA-YF-AA3M-01 19 54662076 54662076 C G LENG1 Missense_Mutation p.G86R 0.56 deleterious(0.03) benign(0.356) TCGA-YF-AA3M-01 19 54673273 54673273 G A TMC4 Missense_Mutation p.A146V 0.10 tolerated(0.07) benign(0.004) TCGA-YF-AA3M-01 19 55315377 55315377 C G KIR2DL4 Missense_Mutation p.H24Q 0.24 tolerated(0.27) benign(0.095) TCGA-YF-AA3M-01 1 101705330 101705330 G A S1PR1 Missense_Mutation p.V264I 0.05 deleterious(0.02) benign(0.18) TCGA-YF-AA3M-01 1 110302370 110302370 C T EPS8L3 Missense_Mutation p.R62Q 0.12 tolerated(0.3) benign(0.209) TCGA-YF-AA3M-01 1 119427357 119427357 A T TBX15 Nonstop_Mutation p.*497Kext*82 0.44 TCGA-YF-AA3M-01 1 12854213 12854213 C A PRAMEF1 Missense_Mutation p.P146H 0.16 deleterious(0) probably_damaging(0.996) TCGA-YF-AA3M-01 1 12854214 12854214 C A PRAMEF1 Silent p.P146P 0.16 TCGA-YF-AA3M-01 1 145561102 145561102 C G ANKRD35 Missense_Mutation p.P264A 0.33 tolerated(0.25) possibly_damaging(0.811) TCGA-YF-AA3M-01 1 154938917 154938917 G C SHC1 Missense_Mutation p.P354A 0.69 deleterious(0) probably_damaging(0.973) TCGA-YF-AA3M-01 1 155291669 155291669 G A RUSC1 Silent p.G35G 0.19 TCGA-YF-AA3M-01 1 180885597 180885597 C T KIAA1614 Nonsense_Mutation p.R120* 0.37 TCGA-YF-AA3M-01 1 226179060 226179060 C A SDE2 Missense_Mutation p.M175I 0.44 tolerated(0.08) benign(0.015) TCGA-YF-AA3M-01 1 23111491 23111491 G T EPHB2 Missense_Mutation p.G245C 0.10 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 1 234593467 234593467 G A TARBP1 Silent p.L556L 0.13 TCGA-YF-AA3M-01 1 245027270 245027270 C T HNRNPU Missense_Mutation p.G114R 0.18 tolerated(0.14) probably_damaging(0.953) TCGA-YF-AA3M-01 1 27057813 27057820 ACCACCAC - ARID1A Frame_Shift_Del p.P508Afs*112 0.21 TCGA-YF-AA3M-01 1 54238133 54238133 A G NDC1 Silent p.H610H 0.31 TCGA-YF-AA3M-01 1 89270113 89270113 C T PKN2 Missense_Mutation p.R441W 0.12 deleterious(0) probably_damaging(0.999) TCGA-YF-AA3M-01 20 13280182 13280182 G A ISM1 3'UTR 0.25 TCGA-YF-AA3M-01 20 18142470 18142470 C G CSRP2BP Nonsense_Mutation p.S230* 0.41 TCGA-YF-AA3M-01 20 3025480 3025480 C A GNRH2 Missense_Mutation p.L104M 0.22 deleterious_low_confidence(0.05) probably_damaging(0.969) TCGA-YF-AA3M-01 20 30738461 30738461 G A TM9SF4 Missense_Mutation p.R375Q 0.10 deleterious(0.03) probably_damaging(0.924) TCGA-YF-AA3M-01 20 3233278 3233278 C T C20orf194 Silent p.E1158E 0.08 TCGA-YF-AA3M-01 20 34773104 34773104 C T EPB41L1 Missense_Mutation p.T211M 0.18 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 20 40101990 40101990 G C CHD6 Missense_Mutation p.S879C 0.39 deleterious(0) probably_damaging(0.993) TCGA-YF-AA3M-01 20 60990648 60990648 G A RBBP8NL Nonsense_Mutation p.R205* 0.28 TCGA-YF-AA3M-01 21 11039066 11039066 A G BAGE2 RNA 0.06 TCGA-YF-AA3M-01 21 19666708 19666708 T C TMPRSS15 Missense_Mutation p.S789G 0.17 tolerated(0.16) benign(0.013) TCGA-YF-AA3M-01 21 31933600 31933600 G A KRTAP19-7 Silent p.Y3Y 0.59 TCGA-YF-AA3M-01 21 40650731 40650731 G A BRWD1 Missense_Mutation p.P314L 0.13 deleterious(0) probably_damaging(0.991) TCGA-YF-AA3M-01 21 43510517 43510517 G A UMODL1 Silent p.T300T 0.12 TCGA-YF-AA3M-01 21 45774528 45774528 C T TRPM2 Intron 0.52 TCGA-YF-AA3M-01 22 41077747 41077747 T C MCHR1 Missense_Mutation p.Y362H 0.28 deleterious(0) probably_damaging(0.998) TCGA-YF-AA3M-01 22 43821054 43821054 C T MPPED1 Silent p.C21C 0.50 TCGA-YF-AA3M-01 2 111907666 111907666 G A BCL2L11 Nonsense_Mutation p.W147* 0.67 TCGA-YF-AA3M-01 2 113332743 113332744 - TGTA POLR1B Frame_Shift_Ins p.P949Lfs*17 0.26 TCGA-YF-AA3M-01 2 138208467 138208467 C T THSD7B Silent p.S1004S 0.43 TCGA-YF-AA3M-01 2 169764145 169764145 G A G6PC2 Silent p.L208L 0.30 TCGA-YF-AA3M-01 2 179593052 179593052 A G TTN Missense_Mutation p.M6500T 0.57 TCGA-YF-AA3M-01 2 186673331 186673331 C G FSIP2 Nonsense_Mutation p.S6522* 0.21 TCGA-YF-AA3M-01 2 18745306 18745306 G T NT5C1B Missense_Mutation p.P530H 0.23 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 2 196762472 196762472 T A DNAH7 Missense_Mutation p.E1522D 0.17 tolerated(0.05) benign(0.144) TCGA-YF-AA3M-01 2 32822962 32822962 C T BIRC6 Missense_Mutation p.S4586L 0.33 probably_damaging(0.997) TCGA-YF-AA3M-01 2 32824809 32824809 C G BIRC6 Missense_Mutation p.L4612V 0.51 probably_damaging(0.98) TCGA-YF-AA3M-01 2 48026079 48026079 G A MSH6 Silent p.T319T 0.10 TCGA-YF-AA3M-01 2 58276063 58276063 A - VRK2 Frame_Shift_Del p.K33Rfs*10 0.43 TCGA-YF-AA3M-01 2 74273926 74273926 C A TET3 Silent p.V159V 0.16 TCGA-YF-AA3M-01 2 85626397 85626397 G C CAPG Silent p.A176A 0.56 TCGA-YF-AA3M-01 2 96780785 96780785 G A ADRA2B Silent p.F368F 0.46 TCGA-YF-AA3M-01 2 99651700 99651700 A G TSGA10 Missense_Mutation p.I536T 0.15 deleterious(0.02) benign(0.342) TCGA-YF-AA3M-01 3 101446301 101446301 G A CEP97 Silent p.L87L 0.55 TCGA-YF-AA3M-01 3 123366124 123366124 G A MYLK Silent p.V1522V 0.13 TCGA-YF-AA3M-01 3 142217452 142217452 C G ATR Missense_Mutation p.E1849Q 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-YF-AA3M-01 3 165548251 165548251 G A BCHE Missense_Mutation p.P191S 0.58 deleterious(0.01) possibly_damaging(0.768) TCGA-YF-AA3M-01 3 179096498 179096498 A C MFN1 Missense_Mutation p.I520L 0.10 tolerated(0.46) benign(0.403) TCGA-YF-AA3M-01 3 194158135 194158135 A G ATP13A3 Missense_Mutation p.M635T 0.37 deleterious(0) possibly_damaging(0.789) TCGA-YF-AA3M-01 3 195611833 195611833 C T TNK2 Silent p.S165S 0.09 TCGA-YF-AA3M-01 3 48215811 48215811 C T CDC25A Missense_Mutation p.S298N 0.08 tolerated(0.48) benign(0.003) TCGA-YF-AA3M-01 3 48465157 48465157 C A PLXNB1 Silent p.A288A 0.57 TCGA-YF-AA3M-01 3 53815627 53815627 T C CACNA1D Silent p.A1595A 0.28 TCGA-YF-AA3M-01 3 62464049 62464049 G A CADPS Silent p.D1072D 0.23 TCGA-YF-AA3M-01 3 89499462 89499462 C T EPHA3 Silent p.L878L 0.23 TCGA-YF-AA3M-01 4 159092302 159092310 TGTCGCGGC - FAM198B In_Frame_Del p.S73_D75del 0.42 TCGA-YF-AA3M-01 4 1730407 1730407 C T TACC3 Silent p.C426C 0.12 TCGA-YF-AA3M-01 4 183676210 183676210 C A TENM3 Missense_Mutation p.L1564I 0.23 tolerated(0.12) benign(0.011) TCGA-YF-AA3M-01 4 2692481 2692481 C G FAM193A Missense_Mutation p.P572A 0.16 tolerated(0.19) benign(0.13) TCGA-YF-AA3M-01 4 3318782 3318782 G T RGS12 Silent p.P295P 0.10 TCGA-YF-AA3M-01 4 3318783 3318783 G T RGS12 Missense_Mutation p.A296S 0.10 deleterious(0) probably_damaging(0.997) TCGA-YF-AA3M-01 4 42895343 42895343 C T GRXCR1 Silent p.I20I 0.29 TCGA-YF-AA3M-01 5 126154823 126154823 C T LMNB1 Silent p.G383G 0.20 TCGA-YF-AA3M-01 5 140306726 140306726 C T PCDHAC1 Silent p.R83R 0.20 TCGA-YF-AA3M-01 5 140529825 140529825 C G PCDHB6 5'Flank 0.22 TCGA-YF-AA3M-01 5 140537282 140537282 C T PCDHB17 Missense_Mutation p.T569M 0.18 deleterious_low_confidence(0.01) benign(0.411) TCGA-YF-AA3M-01 5 145502057 145502057 C G LARS Missense_Mutation p.E1064Q 0.14 tolerated(0.24) benign(0.005) TCGA-YF-AA3M-01 5 149562432 149562432 C T CDX1 Missense_Mutation p.R183W 0.19 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 5 16672920 16672920 C T MYO10 Silent p.L1729L 0.09 TCGA-YF-AA3M-01 5 195214 195214 C T LRRC14B Missense_Mutation p.P431S 0.45 tolerated(0.23) benign(0.331) TCGA-YF-AA3M-01 5 71756562 71756562 C T ZNF366 Silent p.Q254Q 0.25 TCGA-YF-AA3M-01 6 11232869 11232869 G A NEDD9 5'UTR 0.65 TCGA-YF-AA3M-01 6 117113585 117113585 C A GPRC6A Missense_Mutation p.C834F 0.17 deleterious(0) probably_damaging(0.999) TCGA-YF-AA3M-01 6 118786692 118786692 C T CEP85L Missense_Mutation p.S768N 0.06 tolerated(0.16) probably_damaging(0.999) TCGA-YF-AA3M-01 6 118844983 118844983 T C CEP85L Missense_Mutation p.K377R 0.17 tolerated(0.1) possibly_damaging(0.589) TCGA-YF-AA3M-01 6 130442089 130442089 C T L3MBTL3 Missense_Mutation p.S651L 0.17 tolerated(0.2) benign(0.001) TCGA-YF-AA3M-01 6 161551778 161551778 T C AGPAT4 3'UTR 0.19 TCGA-YF-AA3M-01 6 168226674 168226674 G T MLLT4 5'Flank 0.06 TCGA-YF-AA3M-01 6 168468070 168468070 C T FRMD1 Missense_Mutation p.D121N 0.12 deleterious(0) possibly_damaging(0.697) TCGA-YF-AA3M-01 6 26046043 26046043 G A HIST1H3C Silent p.R135R 0.64 TCGA-YF-AA3M-01 6 31664748 31664748 G A ABHD16A Missense_Mutation p.R136W 0.14 deleterious(0.01) possibly_damaging(0.798) TCGA-YF-AA3M-01 6 32827271 32827271 A G PSMB9 Missense_Mutation p.I208V 0.12 tolerated(0.59) benign(0.014) TCGA-YF-AA3M-01 6 38810212 38810212 A C DNAH8 Missense_Mutation p.Y1295S 0.05 probably_damaging(0.993) TCGA-YF-AA3M-01 6 38885056 38885056 A G DNAH8 Silent p.A3177A 0.54 TCGA-YF-AA3M-01 6 43592644 43592644 G A GTPBP2 Silent p.V287V 0.21 TCGA-YF-AA3M-01 6 55120086 55120086 T G HCRTR2 Missense_Mutation p.I185M 0.14 deleterious(0.03) benign(0.363) TCGA-YF-AA3M-01 6 75843688 75843688 C G COL12A1 Silent p.L1850L 0.28 TCGA-YF-AA3M-01 6 76731913 76731913 G A IMPG1 Missense_Mutation p.P196S 0.11 tolerated(0.08) benign(0.035) TCGA-YF-AA3M-01 7 107698335 107698335 C G LAMB4 Silent p.G1107G 0.32 TCGA-YF-AA3M-01 7 111967834 111967834 T A ZNF277 Missense_Mutation p.I207N 0.19 deleterious(0) probably_damaging(0.996) TCGA-YF-AA3M-01 7 148489822 148489822 C T CUL1 Missense_Mutation p.S604L 0.66 deleterious(0) probably_damaging(0.967) TCGA-YF-AA3M-01 7 154684502 154684502 C T DPP6 3'UTR 0.79 TCGA-YF-AA3M-01 7 2565890 2565890 C T LFNG Silent p.F278F 0.30 TCGA-YF-AA3M-01 7 31123760 31123760 G A ADCYAP1R1 Missense_Mutation p.M111I 0.20 tolerated(0.21) benign(0.003) TCGA-YF-AA3M-01 7 31682827 31682827 G T CCDC129 Nonsense_Mutation p.E641* 0.25 TCGA-YF-AA3M-01 7 43548481 43548481 G A HECW1 Intron 0.18 TCGA-YF-AA3M-01 7 7283158 7283158 C A C1GALT1 Missense_Mutation p.P298T 0.11 tolerated(0.14) probably_damaging(0.943) TCGA-YF-AA3M-01 7 7283159 7283159 C A C1GALT1 Missense_Mutation p.P298H 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-YF-AA3M-01 7 73020091 73020091 G A MLXIPL Silent p.V276V 0.42 TCGA-YF-AA3M-01 7 74564051 74564051 G A GTF2IRD2B Missense_Mutation p.E600K 0.74 tolerated(0.41) probably_damaging(0.98) TCGA-YF-AA3M-01 7 86415909 86415909 C T GRM3 Silent p.P267P 0.79 TCGA-YF-AA3M-01 7 97369282 97369282 G C TAC1 3'UTR 0.40 TCGA-YF-AA3M-01 8 110573070 110573070 G A EBAG9 Missense_Mutation p.E145K 0.33 deleterious(0.03) probably_damaging(0.971) TCGA-YF-AA3M-01 8 11703241 11703241 C G CTSB Missense_Mutation p.G284A 0.31 deleterious(0) possibly_damaging(0.883) TCGA-YF-AA3M-01 8 11703250 11703250 C G CTSB Missense_Mutation p.R281P 0.22 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 8 125463144 125463144 G C TRMT12 5'UTR 0.08 TCGA-YF-AA3M-01 8 135622802 135622802 T C ZFAT Missense_Mutation p.Q182R 0.37 tolerated(0.07) probably_damaging(0.953) TCGA-YF-AA3M-01 8 145058783 145058783 C G PARP10 Missense_Mutation p.E463Q 0.52 tolerated(0.34) benign(0.038) TCGA-YF-AA3M-01 8 145771084 145771084 C T ARHGAP39 Silent p.S690S 0.35 TCGA-YF-AA3M-01 8 146157424 146157424 G T ZNF16 Nonsense_Mutation p.S250* 0.41 TCGA-YF-AA3M-01 8 42711506 42711506 G A RNF170 Silent p.V191V 0.33 TCGA-YF-AA3M-01 8 48691020 48691020 C T PRKDC Silent p.Q3950Q 0.55 TCGA-YF-AA3M-01 8 66539524 66539524 T C ARMC1 Missense_Mutation p.D37G 0.41 deleterious(0.04) possibly_damaging(0.5) TCGA-YF-AA3M-01 8 68968169 68968169 A C PREX2 Missense_Mutation p.K400Q 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-YF-AA3M-01 8 70517050 70517050 T G SULF1 Silent p.R420R 0.27 TCGA-YF-AA3M-01 8 70617325 70617325 T C SLCO5A1 Silent p.L521L 0.18 TCGA-YF-AA3M-01 8 95844222 95844222 C G INTS8 Silent p.L191L 0.33 TCGA-YF-AA3M-01 8 97621651 97621651 A G SDC2 Missense_Mutation p.I161V 0.42 tolerated(0.11) probably_damaging(0.994) TCGA-YF-AA3M-01 9 101807038 101807038 G A COL15A1 Missense_Mutation p.A889T 0.13 tolerated(0.52) benign(0.015) TCGA-YF-AA3M-01 9 116857561 116857561 G A KIF12 Missense_Mutation p.P178L 0.81 deleterious(0) probably_damaging(1) TCGA-YF-AA3M-01 9 130826118 130826118 C T NAIF1 Silent p.E191E 0.33 TCGA-YF-AA3M-01 9 134039286 134039286 A G NUP214 Missense_Mutation p.N918S 0.23 benign(0.118) TCGA-YF-AA3M-01 9 134165681 134165681 C T PPAPDC3 Silent p.C99C 0.04 TCGA-YF-AA3M-01 9 22005947 22005947 A C CDKN2B 3'UTR 0.41 TCGA-YF-AA3M-01 9 33071779 33071779 G A SMU1 Silent p.L117L 0.12 TCGA-YF-AA3M-01 X 107372017 107372017 C G ATG4A Missense_Mutation p.S43C 0.94 deleterious(0.02) benign(0.014) TCGA-ZF-A9R0-01 10 102795805 102795805 C G SFXN3 Missense_Mutation p.F130L 0.46 deleterious(0) possibly_damaging(0.893) TCGA-ZF-A9R0-01 10 34620087 34620087 C T PARD3 Missense_Mutation p.D934N 0.36 deleterious(0) benign(0.418) TCGA-ZF-A9R0-01 10 46250443 46250443 G C FAM21C Missense_Mutation p.E434Q 0.12 tolerated(0.37) benign(0.294) TCGA-ZF-A9R0-01 10 46999073 46999073 G C GPRIN2 Missense_Mutation p.E65Q 0.16 deleterious(0.01) probably_damaging(0.94) TCGA-ZF-A9R0-01 10 4879744 4879744 G A AKR1E2 Missense_Mutation p.G185R 0.34 deleterious(0.01) possibly_damaging(0.772) TCGA-ZF-A9R0-01 10 7239623 7239623 G A SFMBT2 Missense_Mutation p.P529S 0.37 tolerated(0.19) probably_damaging(1) TCGA-ZF-A9R0-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.67 TCGA-ZF-A9R0-01 11 118983417 118983417 A G C2CD2L Missense_Mutation p.Y407C 0.54 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9R0-01 11 119215584 119215584 C T MFRP Missense_Mutation p.G258R 0.43 tolerated(0.79) benign(0.303) TCGA-ZF-A9R0-01 11 124252742 124252742 G C OR8B2 Silent p.L166L 0.12 TCGA-ZF-A9R0-01 11 125765527 125765527 G A PUS3 Missense_Mutation p.P179L 0.49 deleterious(0) possibly_damaging(0.506) TCGA-ZF-A9R0-01 11 128856449 128856449 C T ARHGAP32 Silent p.L457L 0.11 TCGA-ZF-A9R0-01 11 130078553 130078553 C T ST14 Missense_Mutation p.T748M 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R0-01 11 2356815 2356815 G A CD81-AS1 Intron 0.56 TCGA-ZF-A9R0-01 11 27389579 27389579 G A LGR4 Silent p.S897S 0.25 TCGA-ZF-A9R0-01 11 3800411 3800411 G C NUP98 Silent p.L51L 0.52 TCGA-ZF-A9R0-01 11 47330578 47330578 G C MADD Missense_Mutation p.E1306Q 0.58 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-ZF-A9R0-01 11 55703277 55703277 G C OR5I1 Silent p.L200L 0.68 TCGA-ZF-A9R0-01 11 56000321 56000321 G A OR5T2 Missense_Mutation p.S114L 0.56 deleterious(0.01) possibly_damaging(0.792) TCGA-ZF-A9R0-01 11 64514234 64514234 G A PYGM Missense_Mutation p.S809F 0.67 tolerated(0.06) probably_damaging(0.997) TCGA-ZF-A9R0-01 11 83810001 83810001 T A DLG2 Silent p.I238I 0.17 TCGA-ZF-A9R0-01 12 104156096 104156096 C T STAB2 Silent p.I2468I 0.18 TCGA-ZF-A9R0-01 12 112097055 112097055 T C BRAP Missense_Mutation p.Y356C 0.30 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R0-01 12 113285551 113285551 G T RPH3A Missense_Mutation p.R45M 0.22 deleterious(0.03) probably_damaging(0.933) TCGA-ZF-A9R0-01 12 133198505 133198505 G A P2RX2 Missense_Mutation p.E481K 0.13 tolerated_low_confidence(0.06) benign(0.112) TCGA-ZF-A9R0-01 12 133254026 133254026 G C POLE Missense_Mutation p.H242D 0.29 tolerated(0.2) benign(0.425) TCGA-ZF-A9R0-01 12 49951250 49951250 G A KCNH3 Silent p.S922S 0.35 TCGA-ZF-A9R0-01 12 52380627 52380627 G A ACVR1B Missense_Mutation p.E429K 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9R0-01 12 7090329 7090329 C G LPCAT3 Missense_Mutation p.E172Q 0.32 tolerated(0.12) possibly_damaging(0.531) TCGA-ZF-A9R0-01 12 90013955 90013955 C T ATP2B1 Silent p.L550L 0.21 TCGA-ZF-A9R0-01 12 9009896 9009896 G A A2ML1 Silent p.T995T 0.17 TCGA-ZF-A9R0-01 12 99076980 99076980 C T APAF1 Silent p.V702V 0.23 TCGA-ZF-A9R0-01 13 111164349 111164349 C T COL4A2 Silent p.F1650F 0.27 TCGA-ZF-A9R0-01 13 26970427 26970427 G C CDK8 Missense_Mutation p.D266H 0.35 deleterious(0) possibly_damaging(0.886) TCGA-ZF-A9R0-01 13 32953974 32953974 C T BRCA2 Missense_Mutation p.S3014L 0.16 deleterious(0) probably_damaging(0.959) TCGA-ZF-A9R0-01 13 39452398 39452398 G A FREM2 Missense_Mutation p.M2933I 0.27 tolerated(0.16) benign(0) TCGA-ZF-A9R0-01 13 39453083 39453083 G C FREM2 Missense_Mutation p.G2992A 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9R0-01 13 45523860 45523860 C G NUFIP1 Missense_Mutation p.E379Q 0.33 deleterious(0.01) possibly_damaging(0.598) TCGA-ZF-A9R0-01 13 45523962 45523962 C G NUFIP1 Missense_Mutation p.E345Q 0.36 deleterious(0.03) probably_damaging(0.928) TCGA-ZF-A9R0-01 13 58207788 58207788 G A PCDH17 Missense_Mutation p.V370I 0.05 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R0-01 13 99100703 99100703 C T FARP1 3'UTR 0.33 TCGA-ZF-A9R0-01 14 103470282 103470282 G C CDC42BPB Missense_Mutation p.Q144E 0.43 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R0-01 14 23869930 23869930 G A MYH6 Silent p.F466F 0.36 TCGA-ZF-A9R0-01 14 31554147 31554147 C T AP4S1 3'UTR 0.22 TCGA-ZF-A9R0-01 14 50901239 50901239 C T MAP4K5 Silent p.V679V 0.27 TCGA-ZF-A9R0-01 14 51225017 51225017 C T NIN Missense_Mutation p.E911K 0.29 tolerated(0.16) probably_damaging(0.997) TCGA-ZF-A9R0-01 14 53110323 53110323 C G ERO1L Missense_Mutation p.E458Q 0.18 tolerated(0.44) benign(0.024) TCGA-ZF-A9R0-01 14 56079156 56079156 C G KTN1 Missense_Mutation p.I130M 0.24 tolerated(0.23) benign(0.172) TCGA-ZF-A9R0-01 14 74162637 74162637 G C DNAL1 Missense_Mutation p.D189H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.5) TCGA-ZF-A9R0-01 14 94964210 94964210 C T SERPINA12 Silent p.K175K 0.37 TCGA-ZF-A9R0-01 14 94964231 94964231 C T SERPINA12 Silent p.Q168Q 0.36 TCGA-ZF-A9R0-01 14 94964360 94964360 C T SERPINA12 Silent p.Q125Q 0.25 TCGA-ZF-A9R0-01 14 95932474 95932474 C T SYNE3 Missense_Mutation p.E141K 0.36 deleterious(0) possibly_damaging(0.901) TCGA-ZF-A9R0-01 15 25488583 25488583 C T SNORD115-40 5'Flank 0.40 TCGA-ZF-A9R0-01 15 57917989 57917989 C T MYZAP Nonsense_Mutation p.Q142* 0.31 TCGA-ZF-A9R0-01 15 62985084 62985084 G A TLN2 Missense_Mutation p.E387K 0.27 deleterious(0) possibly_damaging(0.788) TCGA-ZF-A9R0-01 15 65756223 65756223 G A DPP8 Missense_Mutation p.P632L 0.23 deleterious(0.05) possibly_damaging(0.642) TCGA-ZF-A9R0-01 15 65756239 65756239 G C DPP8 Missense_Mutation p.L627V 0.25 tolerated(0.51) benign(0.101) TCGA-ZF-A9R0-01 15 77451016 77451016 C G PEAK1 Missense_Mutation p.E1054Q 0.38 deleterious(0.04) possibly_damaging(0.46) TCGA-ZF-A9R0-01 15 81229024 81229024 C G KIAA1199 Missense_Mutation p.Q1007E 0.30 deleterious(0) probably_damaging(0.963) TCGA-ZF-A9R0-01 15 85334051 85334051 C G ZNF592 Missense_Mutation p.S779C 0.07 deleterious(0) probably_damaging(0.946) TCGA-ZF-A9R0-01 15 91486220 91486220 G A UNC45A Missense_Mutation p.R312Q 0.30 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R0-01 15 91491502 91491502 C T UNC45A Nonsense_Mutation p.Q576* 0.35 TCGA-ZF-A9R0-01 16 14704555 14704555 G C PARN Nonsense_Mutation p.S167* 0.47 TCGA-ZF-A9R0-01 16 19278221 19278221 G A SYT17 Silent p.K416K 0.53 TCGA-ZF-A9R0-01 16 19725472 19725472 C T KNOP1 Missense_Mutation p.E296K 0.16 tolerated(0.07) benign(0.439) TCGA-ZF-A9R0-01 16 24921659 24921659 C A SLC5A11 Missense_Mutation p.D561E 0.24 tolerated(0.24) benign(0.048) TCGA-ZF-A9R0-01 16 28967368 28967368 C A NFATC2IP Silent p.L216L 0.32 TCGA-ZF-A9R0-01 16 30099815 30099815 G A TBX6 Intron 0.49 TCGA-ZF-A9R0-01 16 30779568 30779568 C G RNF40 Missense_Mutation p.P566A 0.23 tolerated(0.77) benign(0) TCGA-ZF-A9R0-01 16 3349202 3349202 C G TIGD7 Missense_Mutation p.Q471H 0.28 tolerated(0.41) benign(0) TCGA-ZF-A9R0-01 16 58552846 58552846 G A SETD6 Silent p.A445A 0.11 TCGA-ZF-A9R0-01 16 66969516 66969516 G A CES2 Missense_Mutation p.R57Q 0.30 tolerated(0.33) benign(0.006) TCGA-ZF-A9R0-01 16 71054106 71054106 C T HYDIN Missense_Mutation p.D1101N 0.30 probably_damaging(0.981) TCGA-ZF-A9R0-01 16 90002146 90002146 G A TUBB3 Silent p.T429T 0.30 TCGA-ZF-A9R0-01 17 10447069 10447069 C T MYH2 Missense_Mutation p.G234S 0.51 deleterious(0) probably_damaging(0.934) TCGA-ZF-A9R0-01 17 28576036 28576036 C T BLMH Silent p.%3D 0.20 TCGA-ZF-A9R0-01 17 28576040 28576040 C G BLMH Missense_Mutation p.E455Q 0.20 tolerated_low_confidence(0.67) benign(0.069) TCGA-ZF-A9R0-01 17 31263409 31263409 G C TMEM98 Missense_Mutation p.M119I 0.42 tolerated(0.47) benign(0.072) TCGA-ZF-A9R0-01 17 36484068 36484068 C T GPR179 Missense_Mutation p.G1795D 0.29 tolerated(0.11) benign(0.172) TCGA-ZF-A9R0-01 17 37360850 37360850 G C RPL19 Missense_Mutation p.K180N 0.24 deleterious(0) possibly_damaging(0.851) TCGA-ZF-A9R0-01 17 39596841 39596841 C T KRT38 Silent p.L111L 0.32 TCGA-ZF-A9R0-01 17 39596864 39596864 C G KRT38 Missense_Mutation p.E104Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R0-01 17 41169886 41169886 C T VAT1 Silent p.L276L 0.37 TCGA-ZF-A9R0-01 17 57109287 57109287 G A TRIM37 Missense_Mutation p.R640C 0.28 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-ZF-A9R0-01 17 57148277 57148277 G C TRIM37 Missense_Mutation p.S239C 0.35 deleterious(0.03) benign(0.214) TCGA-ZF-A9R0-01 17 60033782 60033783 - CAC MED13 In_Frame_Ins p.W1846dup 0.11 TCGA-ZF-A9R0-01 17 68172185 68172185 C A KCNJ2 Missense_Mutation p.H335Q 0.16 tolerated(0.26) benign(0.062) TCGA-ZF-A9R0-01 17 73921519 73921519 C A FBF1 Missense_Mutation p.D279Y 0.54 deleterious(0) probably_damaging(0.935) TCGA-ZF-A9R0-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.33 deleterious(0) probably_damaging(1) TCGA-ZF-A9R0-01 17 79846175 79846175 G A ALYREF Missense_Mutation p.S241L 0.44 deleterious(0.05) benign(0.065) TCGA-ZF-A9R0-01 18 28966700 28966700 G C DSG4 Missense_Mutation p.R45T 0.46 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R0-01 19 10747259 10747259 C T SLC44A2 Silent p.L498L 0.42 TCGA-ZF-A9R0-01 19 13058772 13058772 C G RAD23A Missense_Mutation p.I61M 0.45 deleterious(0.04) possibly_damaging(0.735) TCGA-ZF-A9R0-01 19 13264165 13264165 C G IER2 Silent p.L55L 0.40 TCGA-ZF-A9R0-01 19 13934200 13934200 C T ZSWIM4 Missense_Mutation p.H584Y 0.30 tolerated(0.07) unknown(0) TCGA-ZF-A9R0-01 19 23941610 23941610 G A ZNF681 5'UTR 0.25 TCGA-ZF-A9R0-01 19 42911874 42911874 C G LIPE Missense_Mutation p.E576Q 0.28 tolerated(0.16) benign(0.403) TCGA-ZF-A9R0-01 19 44635715 44635715 C G ZNF225 Missense_Mutation p.F316L 0.27 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R0-01 19 52919984 52919984 C T ZNF528 Missense_Mutation p.H627Y 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-ZF-A9R0-01 19 54666423 54666423 G A TMC4 Silent p.L501L 0.29 TCGA-ZF-A9R0-01 19 56179916 56179916 C T U2AF2 Silent p.F262F 0.31 TCGA-ZF-A9R0-01 19 58452211 58452211 T G ZNF256 3'UTR 0.40 TCGA-ZF-A9R0-01 19 59059181 59059181 C T TRIM28 Nonsense_Mutation p.Q288* 0.18 TCGA-ZF-A9R0-01 19 59067689 59067689 G C UBE2M Silent p.L135L 0.25 TCGA-ZF-A9R0-01 19 59068071 59068071 G C UBE2M Silent p.V110V 0.19 TCGA-ZF-A9R0-01 19 8139986 8139986 G A FBN3 Silent p.F2557F 0.30 TCGA-ZF-A9R0-01 1 109814054 109814054 A G CELSR2 Missense_Mutation p.T2575A 0.29 tolerated(0.14) benign(0.268) TCGA-ZF-A9R0-01 1 110207671 110207671 C G GSTM4 3'Flank 0.33 TCGA-ZF-A9R0-01 1 11187752 11187752 C T MTOR Missense_Mutation p.E2049K 0.23 tolerated(0.57) benign(0.004) TCGA-ZF-A9R0-01 1 11187803 11187803 C T MTOR Missense_Mutation p.E2032K 0.30 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R0-01 1 115527399 115527399 G C SYCP1 Missense_Mutation p.L871F 0.27 deleterious(0.02) benign(0.252) TCGA-ZF-A9R0-01 1 11982702 11982702 G A KIAA2013 Silent p.F626F 0.50 TCGA-ZF-A9R0-01 1 151677544 151677544 C T CELF3 Silent p.R457R 0.05 TCGA-ZF-A9R0-01 1 154942951 154942951 G C SHC1 Missense_Mutation p.L18V 0.34 tolerated(1) benign(0.004) TCGA-ZF-A9R0-01 1 157514817 157514817 C G FCRL5 Silent p.L121L 0.47 TCGA-ZF-A9R0-01 1 15788083 15788083 A C CELA2A Missense_Mutation p.K53Q 0.33 tolerated(0.52) benign(0.009) TCGA-ZF-A9R0-01 1 166818925 166818925 T C POGK Missense_Mutation p.L370S 0.33 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9R0-01 1 169356242 169356242 G C BLZF1 Missense_Mutation p.R342T 0.37 deleterious(0.04) benign(0.007) TCGA-ZF-A9R0-01 1 169356447 169356447 G C BLZF1 3'UTR 0.31 TCGA-ZF-A9R0-01 1 17431417 17431417 G A PADI2 Missense_Mutation p.R78W 0.28 tolerated(0.07) possibly_damaging(0.766) TCGA-ZF-A9R0-01 1 180775644 180775644 G A XPR1 Missense_Mutation p.R211K 0.14 deleterious(0) probably_damaging(0.925) TCGA-ZF-A9R0-01 1 183521065 183521065 G A SMG7 Intron 0.43 TCGA-ZF-A9R0-01 1 1849592 1849592 G A TMEM52 Missense_Mutation p.S120F 0.47 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R0-01 1 186295316 186295316 T - TPR Frame_Shift_Del p.M1981Wfs*105 0.19 TCGA-ZF-A9R0-01 1 200567476 200567476 G A KIF14 Missense_Mutation p.S813F 0.29 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R0-01 1 201437606 201437606 G T PHLDA3 Silent p.V103V 0.32 TCGA-ZF-A9R0-01 1 201983137 201983137 T C ELF3 Missense_Mutation p.L329P 0.33 deleterious(0) probably_damaging(1) TCGA-ZF-A9R0-01 1 207297548 207297548 C T C4BPA Silent p.I181I 0.14 TCGA-ZF-A9R0-01 1 207934593 207934593 G C CD46 Splice_Site p.X159_splice 0.35 TCGA-ZF-A9R0-01 1 216270481 216270481 C G USH2A Missense_Mutation p.E1568Q 0.49 probably_damaging(1) TCGA-ZF-A9R0-01 1 224488310 224488310 G A NVL Missense_Mutation p.S339F 0.44 deleterious(0) probably_damaging(1) TCGA-ZF-A9R0-01 1 241099949 241099949 G C RGS7 Nonsense_Mutation p.S95* 0.24 TCGA-ZF-A9R0-01 1 246797230 246797230 G C CNST Missense_Mutation p.E207D 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9R0-01 1 246797835 246797835 G A CNST Missense_Mutation p.G255E 0.28 tolerated(0.5) probably_damaging(0.941) TCGA-ZF-A9R0-01 1 246811353 246811353 G T CNST Intron 0.24 TCGA-ZF-A9R0-01 1 248367151 248367151 G A OR2M3 Missense_Mutation p.R261Q 0.31 tolerated(0.16) benign(0.021) TCGA-ZF-A9R0-01 1 33478907 33478907 C G AK2 Missense_Mutation p.E199Q 0.28 tolerated(0.12) benign(0.001) TCGA-ZF-A9R0-01 1 3424435 3424435 C G MEGF6 Missense_Mutation p.Q571H 0.34 deleterious(0.01) benign(0.071) TCGA-ZF-A9R0-01 1 36068827 36068827 C G PSMB2 3'UTR 0.21 TCGA-ZF-A9R0-01 1 37949105 37949105 C A ZC3H12A Missense_Mutation p.P565T 0.29 tolerated(0.2) benign(0.357) TCGA-ZF-A9R0-01 1 6533126 6533126 C G PLEKHG5 Missense_Mutation p.E381Q 0.16 tolerated(0.06) benign(0.347) TCGA-ZF-A9R0-01 1 86961305 86961305 G C CLCA1 Missense_Mutation p.R687T 0.36 tolerated(0.4) benign(0.007) TCGA-ZF-A9R0-01 1 89298481 89298481 G A PKN2 Missense_Mutation p.E873K 0.37 deleterious(0) probably_damaging(0.911) TCGA-ZF-A9R0-01 1 94528162 94528162 C T ABCA4 Silent p.Q636Q 0.21 TCGA-ZF-A9R0-01 1 94574170 94574170 G T ABCA4 Missense_Mutation p.F135L 0.36 tolerated(1) benign(0.002) TCGA-ZF-A9R0-01 20 17640924 17640924 C G RRBP1 Missense_Mutation p.E77Q 0.20 deleterious(0.05) probably_damaging(0.988) TCGA-ZF-A9R0-01 20 20527419 20527419 G A RALGAPA2 Missense_Mutation p.P1072S 0.08 deleterious(0) possibly_damaging(0.893) TCGA-ZF-A9R0-01 20 25228820 25228820 G A PYGB Silent p.A2A 0.08 TCGA-ZF-A9R0-01 20 30730854 30730854 C T TM9SF4 Missense_Mutation p.H200Y 0.22 tolerated(0.27) benign(0.005) TCGA-ZF-A9R0-01 20 3362059 3362059 C G C20orf194 Missense_Mutation p.E84Q 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-A9R0-01 20 34832712 34832712 C T AAR2 Missense_Mutation p.S284L 0.14 tolerated(0.06) possibly_damaging(0.752) TCGA-ZF-A9R0-01 20 390551 390551 C G RBCK1 Missense_Mutation p.R17G 0.10 tolerated(0.08) benign(0.406) TCGA-ZF-A9R0-01 20 39704876 39704876 C G TOP1 Nonsense_Mutation p.S74* 0.32 TCGA-ZF-A9R0-01 20 422261 422261 C T TBC1D20 Silent p.V199V 0.20 TCGA-ZF-A9R0-01 20 43142550 43142550 C G SERINC3 Missense_Mutation p.Q57H 0.14 deleterious(0) possibly_damaging(0.617) TCGA-ZF-A9R0-01 20 44259562 44259562 C T WFDC10A Silent p.L49L 0.16 TCGA-ZF-A9R0-01 20 45362516 45362516 G C SLC2A10 3'UTR 0.18 TCGA-ZF-A9R0-01 20 45874931 45874931 G C ZMYND8 Nonsense_Mutation p.S702* 0.46 TCGA-ZF-A9R0-01 20 61444836 61444836 C A OGFR Silent p.G623G 0.07 TCGA-ZF-A9R0-01 20 62221629 62221629 A G GMEB2 Missense_Mutation p.F469S 0.17 tolerated(0.5) benign(0.021) TCGA-ZF-A9R0-01 20 7962981 7962981 C T TMX4 Missense_Mutation p.E323K 0.14 deleterious(0.03) benign(0.024) TCGA-ZF-A9R0-01 21 36079615 36079615 T A CLIC6 Missense_Mutation p.F471Y 0.19 deleterious(0.01) possibly_damaging(0.785) TCGA-ZF-A9R0-01 21 38309557 38309557 C A HLCS Missense_Mutation p.R63I 0.34 tolerated(0.06) benign(0.025) TCGA-ZF-A9R0-01 21 39671931 39671931 C T KCNJ15 Silent p.L250L 0.34 TCGA-ZF-A9R0-01 21 43161705 43161705 C G RIPK4 Missense_Mutation p.E550Q 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9R0-01 21 43162129 43162129 C T RIPK4 Silent p.K408K 0.38 TCGA-ZF-A9R0-01 21 44299635 44299635 G C WDR4 5'UTR 0.21 TCGA-ZF-A9R0-01 22 19136519 19136519 C T GSC2 Silent p.P201P 0.33 TCGA-ZF-A9R0-01 22 27024278 27024278 C A CRYBA4 Silent p.I109I 0.25 TCGA-ZF-A9R0-01 22 36054951 36054951 C T APOL6 Nonsense_Mutation p.Q114* 0.13 TCGA-ZF-A9R0-01 22 36055131 36055131 C G APOL6 Missense_Mutation p.L174V 0.15 tolerated(0.32) benign(0) TCGA-ZF-A9R0-01 22 38617497 38617497 G A TMEM184B Silent p.L401L 0.72 TCGA-ZF-A9R0-01 22 39908024 39908024 C T MIEF1 Silent p.F105F 0.19 TCGA-ZF-A9R0-01 22 41190579 41190579 C G SLC25A17 Missense_Mutation p.E41Q 0.30 deleterious(0.04) possibly_damaging(0.876) TCGA-ZF-A9R0-01 22 41916247 41916247 G A ACO2 Missense_Mutation p.E369K 0.51 tolerated_low_confidence(1) benign(0.001) TCGA-ZF-A9R0-01 2 122520583 122520583 G C TSN Missense_Mutation p.E126Q 0.18 tolerated(0.24) benign(0.003) TCGA-ZF-A9R0-01 2 189931480 189931480 C G COL5A2 Missense_Mutation p.G477A 0.53 probably_damaging(0.993) TCGA-ZF-A9R0-01 2 204003357 204003357 G C NBEAL1 Missense_Mutation p.M1549I 0.18 tolerated(0.14) benign(0) TCGA-ZF-A9R0-01 2 20647495 20647495 A G RHOB Missense_Mutation p.D90G 0.62 deleterious(0.03) benign(0.387) TCGA-ZF-A9R0-01 2 20647508 20647508 C G RHOB Missense_Mutation p.N94K 0.60 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R0-01 2 207024554 207024554 C T EEF1B2 5'UTR 0.50 TCGA-ZF-A9R0-01 2 232320626 232320626 G A NCL Intron 0.51 TCGA-ZF-A9R0-01 2 8877078 8877078 C A KIDINS220 Missense_Mutation p.D1213Y 0.63 deleterious(0) possibly_damaging(0.806) TCGA-ZF-A9R0-01 3 125727640 125727640 C G SLC41A3 Missense_Mutation p.E397Q 0.15 tolerated(0.76) benign(0.07) TCGA-ZF-A9R0-01 3 129278515 129278515 C T PLXND1 Missense_Mutation p.E1749K 0.42 deleterious(0.04) probably_damaging(0.981) TCGA-ZF-A9R0-01 3 129278615 129278615 C A PLXND1 Missense_Mutation p.Q1715H 0.35 deleterious(0) possibly_damaging(0.888) TCGA-ZF-A9R0-01 3 141640822 141640822 G A ATP1B3 Missense_Mutation p.E196K 0.33 deleterious(0.04) benign(0.285) TCGA-ZF-A9R0-01 3 141644547 141644547 G C ATP1B3 3'UTR 0.27 TCGA-ZF-A9R0-01 3 143100929 143100929 C T SLC9A9 Silent p.L499L 0.31 TCGA-ZF-A9R0-01 3 155286072 155286072 C G PLCH1 Missense_Mutation p.K259N 0.21 tolerated(0.53) benign(0.014) TCGA-ZF-A9R0-01 3 170843742 170843742 G A TNIK Nonsense_Mutation p.R658* 0.22 TCGA-ZF-A9R0-01 3 195704074 195704074 C T SDHAP1 RNA 0.42 TCGA-ZF-A9R0-01 3 23959442 23959442 G T RPL15 Missense_Mutation p.R31L 0.37 deleterious(0.01) benign(0.006) TCGA-ZF-A9R0-01 3 3186363 3186363 G C TRNT1 Missense_Mutation p.E193Q 0.46 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9R0-01 3 36873954 36873954 T G TRANK1 Silent p.R2330R 0.11 TCGA-ZF-A9R0-01 3 37107200 37107200 C T LRRFIP2 Intron 0.40 TCGA-ZF-A9R0-01 3 62860618 62860618 G A CADPS Silent p.S29S 0.38 TCGA-ZF-A9R0-01 4 100268235 100268237 GAA - ADH1C In_Frame_Del p.L62del 0.58 TCGA-ZF-A9R0-01 4 110883036 110883036 C T EGF Missense_Mutation p.R403C 0.06 deleterious(0.01) benign(0.258) TCGA-ZF-A9R0-01 4 114284532 114284532 C G ANK2 Missense_Mutation p.H3599D 0.42 probably_damaging(0.998) TCGA-ZF-A9R0-01 4 170017604 170017604 C G SH3RF1 3'UTR 0.52 TCGA-ZF-A9R0-01 4 185309838 185309838 G C IRF2 3'UTR 0.32 TCGA-ZF-A9R0-01 4 185309846 185309846 T A IRF2 3'UTR 0.39 TCGA-ZF-A9R0-01 4 186544663 186544663 G A SORBS2 Silent p.Y736Y 0.09 TCGA-ZF-A9R0-01 4 22438158 22438158 G A GPR125 Missense_Mutation p.R398C 0.17 deleterious(0) probably_damaging(0.956) TCGA-ZF-A9R0-01 4 2829042 2829042 G T SH3BP2 Nonsense_Mutation p.E229* 0.19 TCGA-ZF-A9R0-01 4 54374302 54374302 G A LNX1 Missense_Mutation p.T158M 0.25 tolerated(0.16) benign(0.042) TCGA-ZF-A9R0-01 4 88987022 88987022 G A PKD2 Silent p.E783E 0.55 TCGA-ZF-A9R0-01 5 140222207 140222207 C T PCDHA8 Missense_Mutation p.S434L 0.50 deleterious_low_confidence(0.05) benign(0.05) TCGA-ZF-A9R0-01 5 151047138 151047138 C T SPARC Missense_Mutation p.E159K 0.43 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R0-01 5 154396605 154396605 C T KIF4B Silent p.G1062G 0.45 TCGA-ZF-A9R0-01 5 168093506 168093506 C G SLIT3 Missense_Mutation p.E1509Q 0.38 tolerated(0.3) possibly_damaging(0.765) TCGA-ZF-A9R0-01 5 169507229 169507229 C G DOCK2 Silent p.L1743L 0.37 TCGA-ZF-A9R0-01 5 176860650 176860650 C T GRK6 Silent p.I237I 0.55 TCGA-ZF-A9R0-01 5 38950364 38950364 C G RICTOR Missense_Mutation p.E1196Q 0.22 tolerated(0.12) benign(0.406) TCGA-ZF-A9R0-01 5 39377048 39377048 G C DAB2 Missense_Mutation p.S614C 0.13 deleterious(0.01) probably_damaging(0.927) TCGA-ZF-A9R0-01 5 42808290 42808290 G C SEPP1 Missense_Mutation p.Q56E 0.11 tolerated(0.12) benign(0.022) TCGA-ZF-A9R0-01 5 68470094 68470094 G C CCNB1 Missense_Mutation p.R188T 0.12 deleterious(0.02) possibly_damaging(0.495) TCGA-ZF-A9R0-01 5 68470222 68470222 G C CCNB1 Missense_Mutation p.D231H 0.18 deleterious(0) possibly_damaging(0.894) TCGA-ZF-A9R0-01 5 90368421 90368421 G T GPR98 Nonsense_Mutation p.E6104* 0.60 TCGA-ZF-A9R0-01 5 96363481 96363481 C T LNPEP Missense_Mutation p.S970L 0.18 deleterious(0.04) possibly_damaging(0.595) TCGA-ZF-A9R0-01 6 100062341 100062341 C T PRDM13 Silent p.F610F 0.60 TCGA-ZF-A9R0-01 6 10874964 10874964 G C GCM2 Nonsense_Mutation p.S262* 0.61 TCGA-ZF-A9R0-01 6 27839802 27839802 C T HIST1H3I Missense_Mutation p.E98K 0.57 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ZF-A9R0-01 6 31516150 31516150 G T NFKBIL1 Missense_Mutation p.D90Y 0.54 deleterious(0) probably_damaging(1) TCGA-ZF-A9R0-01 6 33659476 33659476 C T ITPR3 Missense_Mutation p.S2437L 0.59 tolerated(0.27) benign(0.005) TCGA-ZF-A9R0-01 6 43323422 43323422 G A ZNF318 Silent p.S550S 0.17 TCGA-ZF-A9R0-01 7 137028405 137028405 G A PTN 5'UTR 0.33 TCGA-ZF-A9R0-01 7 151049920 151049920 C G NUB1 Missense_Mutation p.Q147E 0.27 tolerated(0.19) possibly_damaging(0.878) TCGA-ZF-A9R0-01 7 158526939 158526939 C G ESYT2 Missense_Mutation p.D881H 0.30 tolerated(0.08) benign(0.213) TCGA-ZF-A9R0-01 7 6777016 6777016 C T PMS2CL RNA 0.17 TCGA-ZF-A9R0-01 7 7278163 7278163 G A C1GALT1 Silent p.L166L 0.39 TCGA-ZF-A9R0-01 7 93112110 93112110 C T CALCR Intron 0.40 TCGA-ZF-A9R0-01 7 94928273 94928273 G C PON1 Missense_Mutation p.L351V 0.32 deleterious(0.05) probably_damaging(0.995) TCGA-ZF-A9R0-01 7 95906580 95906580 A T SLC25A13 Missense_Mutation p.I47N 0.22 deleterious(0) benign(0.163) TCGA-ZF-A9R0-01 7 99017661 99017661 G - ATP5J2-PTCD1 Frame_Shift_Del p.R727Gfs*45 0.27 TCGA-ZF-A9R0-01 8 103238200 103238200 G A RRM2B Silent p.I89I 0.16 TCGA-ZF-A9R0-01 8 10465787 10465787 G C RP1L1 Missense_Mutation p.Q1941E 0.26 unknown(0) TCGA-ZF-A9R0-01 8 113256737 113256737 G C CSMD3 Missense_Mutation p.H3430D 0.48 deleterious(0.02) benign(0.001) TCGA-ZF-A9R0-01 8 141582911 141582911 C G AGO2 Missense_Mutation p.K112N 0.12 tolerated(0.25) benign(0.006) TCGA-ZF-A9R0-01 8 144804378 144804378 C A MAPK15 Nonsense_Mutation p.S531* 0.10 TCGA-ZF-A9R0-01 8 29923530 29923530 G C TMEM66 Nonsense_Mutation p.S323* 0.36 TCGA-ZF-A9R0-01 8 37732580 37732580 C G RAB11FIP1 Missense_Mutation p.E359Q 0.63 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9R0-01 8 67576631 67576631 C T VCPIP1 Missense_Mutation p.A855T 0.50 tolerated(0.47) benign(0.004) TCGA-ZF-A9R0-01 8 95164212 95164212 C T CDH17 Silent p.V560V 0.10 TCGA-ZF-A9R0-01 8 95905116 95905116 C T CCNE2 Missense_Mutation p.D83N 0.58 tolerated(0.21) benign(0.206) TCGA-ZF-A9R0-01 8 99118185 99118185 G A HRSP12 Silent p.V92V 0.10 TCGA-ZF-A9R0-01 9 115422016 115422016 G C KIAA1958 Silent p.R606R 0.62 TCGA-ZF-A9R0-01 9 118949582 118949582 C T PAPPA Missense_Mutation p.R189C 0.56 tolerated(0.12) probably_damaging(0.978) TCGA-ZF-A9R0-01 9 126794805 126794805 C G LHX2 Missense_Mutation p.S347W 0.62 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R0-01 9 130493029 130493029 C A TTC16 Nonsense_Mutation p.S656* 0.47 TCGA-ZF-A9R0-01 9 16727871 16727871 G A BNC2 Missense_Mutation p.T85M 0.11 tolerated_low_confidence(0.07) benign(0.143) TCGA-ZF-A9R0-01 9 35710623 35710623 C T TLN1 Missense_Mutation p.E1421K 0.09 tolerated(0.64) probably_damaging(0.942) TCGA-ZF-A9R0-01 9 35749850 35749850 C T RGP1 Missense_Mutation p.T33M 0.24 tolerated(0.08) benign(0.357) TCGA-ZF-A9R0-01 9 35870121 35870121 G C OR13J1 Missense_Mutation p.S93C 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R0-01 9 36217391 36217391 G A GNE Silent p.L745L 0.12 TCGA-ZF-A9R0-01 9 37126451 37126451 A G ZCCHC7 Missense_Mutation p.Y41C 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R0-01 9 95094486 95094486 G C CENPP Missense_Mutation p.E48Q 0.60 tolerated(0.15) benign(0.044) TCGA-ZF-A9R0-01 9 99581910 99581910 C G ZNF782 Missense_Mutation p.R132T 0.59 tolerated(0.34) benign(0.062) TCGA-ZF-A9R0-01 X 100402946 100402946 C T CENPI Silent p.F630F 0.43 TCGA-ZF-A9R0-01 X 102978790 102978790 C G GLRA4 Missense_Mutation p.E191Q 0.57 deleterious(0.02) possibly_damaging(0.788) TCGA-ZF-A9R0-01 X 23956728 23956728 C T CXorf58 Silent p.L284L 0.51 TCGA-ZF-A9R0-01 X 23957400 23957400 C T CXorf58 Missense_Mutation p.H327Y 0.52 deleterious_low_confidence(0.03) benign(0.078) TCGA-ZF-A9R0-01 X 23957479 23957479 C G CXorf58 3'UTR 0.42 TCGA-ZF-A9R0-01 X 23957517 23957517 C T CXorf58 3'UTR 0.40 TCGA-ZF-A9R0-01 X 23957518 23957518 C A CXorf58 3'UTR 0.40 TCGA-ZF-A9R0-01 X 44929017 44929017 C G KDM6A Nonsense_Mutation p.S706* 0.43 TCGA-ZF-A9R0-01 X 57515398 57515398 G C FAAH2 3'UTR 0.50 TCGA-ZF-A9R1-01 10 103542338 103542338 C G NPM3 Missense_Mutation p.G74A 0.16 deleterious(0.04) possibly_damaging(0.596) TCGA-ZF-A9R1-01 10 124392379 124392379 C G DMBT1 Missense_Mutation p.P1995A 0.39 tolerated(0.08) possibly_damaging(0.779) TCGA-ZF-A9R1-01 10 50121796 50121796 G A LRRC18 Silent p.S135S 0.24 TCGA-ZF-A9R1-01 10 70547732 70547732 C T CCAR1 Missense_Mutation p.R977W 0.22 deleterious(0) unknown(0) TCGA-ZF-A9R1-01 10 7214540 7214540 T A SFMBT2 Missense_Mutation p.R690W 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R1-01 10 98778794 98778794 G C SLIT1 Silent p.T939T 0.31 TCGA-ZF-A9R1-01 11 101454132 101454132 C G TRPC6 Missense_Mutation p.D35H 0.38 tolerated_low_confidence(0.29) benign(0.365) TCGA-ZF-A9R1-01 11 108005886 108005886 C G ACAT1 Missense_Mutation p.P118A 0.25 tolerated(0.12) benign(0.029) TCGA-ZF-A9R1-01 11 132399010 132399010 A C OPCML Missense_Mutation p.C157W 0.24 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R1-01 11 92087472 92087472 G C FAT3 Missense_Mutation p.D732H 0.25 benign(0.151) TCGA-ZF-A9R1-01 11 93466711 93466711 G A KIAA1731 3'Flank 0.24 TCGA-ZF-A9R1-01 12 111748354 111748354 G A CUX2 Missense_Mutation p.E590K 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-A9R1-01 12 117723945 117723945 C T NOS1 Silent p.S418S 0.22 TCGA-ZF-A9R1-01 12 117768176 117768176 C A NOS1 Missense_Mutation p.M233I 0.18 tolerated_low_confidence(0.17) benign(0) TCGA-ZF-A9R1-01 12 21033786 21033786 C G SLCO1B3 Intron 0.20 TCGA-ZF-A9R1-01 12 29624842 29624842 G T OVCH1 Silent p.P583P 0.25 TCGA-ZF-A9R1-01 12 40651079 40651079 G A LRRK2 Missense_Mutation p.G440R 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-A9R1-01 12 4829792 4829792 C T GALNT8 5'UTR 0.29 TCGA-ZF-A9R1-01 12 54925052 54925052 G T NCKAP1L Missense_Mutation p.A839S 0.22 tolerated(0.2) possibly_damaging(0.718) TCGA-ZF-A9R1-01 12 6691834 6691834 A G CHD4 Silent p.F1439F 0.26 TCGA-ZF-A9R1-01 12 88584241 88584242 - A TMTC3 Frame_Shift_Ins p.Y519Ifs*8 0.19 TCGA-ZF-A9R1-01 12 98850235 98850235 G A SLC9A7P1 RNA 0.21 TCGA-ZF-A9R1-01 13 111287687 111287687 T G CARKD Intron 0.35 TCGA-ZF-A9R1-01 13 20608481 20608481 G A ZMYM2 Missense_Mutation p.E686K 0.33 tolerated(0.51) probably_damaging(0.989) TCGA-ZF-A9R1-01 14 101350980 101350980 C T RTL1 Missense_Mutation p.S49N 0.24 tolerated_low_confidence(0.05) benign(0.055) TCGA-ZF-A9R1-01 14 20389178 20389178 G A OR4K5 Missense_Mutation p.R138Q 0.12 tolerated(0.4) benign(0.01) TCGA-ZF-A9R1-01 15 41812852 41812852 G C RPAP1 Missense_Mutation p.L1178V 0.34 deleterious(0.05) benign(0.37) TCGA-ZF-A9R1-01 15 60803787 60803787 C G RORA Missense_Mutation p.R186T 0.34 deleterious(0) probably_damaging(0.984) TCGA-ZF-A9R1-01 15 75109019 75109019 C T LMAN1L Missense_Mutation p.S162F 0.32 tolerated(0.1) benign(0.158) TCGA-ZF-A9R1-01 15 85452005 85452005 C G SLC28A1 Silent p.V258V 0.11 TCGA-ZF-A9R1-01 16 21985275 21985275 C T UQCRC2 Missense_Mutation p.S342F 0.31 tolerated(0.06) benign(0.184) TCGA-ZF-A9R1-01 16 28943334 28943334 C T CD19 Missense_Mutation p.R5C 0.22 tolerated_low_confidence(0.06) benign(0) TCGA-ZF-A9R1-01 16 31404690 31404690 C T ITGAD Silent p.F3F 0.26 TCGA-ZF-A9R1-01 16 58287958 58287958 G C CCDC113 Silent p.L95L 0.22 TCGA-ZF-A9R1-01 17 33288464 33288464 G C CCT6B 5'UTR 0.27 TCGA-ZF-A9R1-01 17 44952649 44952649 C T WNT9B Silent p.L173L 0.30 TCGA-ZF-A9R1-01 17 44953915 44953915 G T WNT9B Missense_Mutation p.G302V 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-A9R1-01 17 56247292 56247292 C G OR4D2 Missense_Mutation p.I92M 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R1-01 17 56247358 56247358 C T OR4D2 Silent p.F114F 0.25 TCGA-ZF-A9R1-01 17 56247787 56247787 C G OR4D2 Silent p.L257L 0.32 TCGA-ZF-A9R1-01 17 74071066 74071066 C T GALR2 Silent p.L34L 0.30 TCGA-ZF-A9R1-01 17 74278099 74278099 G T QRICH2 Missense_Mutation p.P1204H 0.44 deleterious(0) probably_damaging(0.949) TCGA-ZF-A9R1-01 18 22805058 22805058 C T ZNF521 Missense_Mutation p.E942K 0.34 tolerated(0.14) probably_damaging(0.994) TCGA-ZF-A9R1-01 18 32712102 32712102 A T MAPRE2 Missense_Mutation p.N286I 0.26 deleterious(0.01) possibly_damaging(0.679) TCGA-ZF-A9R1-01 18 32948229 32948229 G C ZNF396 3'UTR 0.22 TCGA-ZF-A9R1-01 18 44559943 44559943 C T TCEB3B Missense_Mutation p.D565N 0.33 deleterious(0.01) benign(0.295) TCGA-ZF-A9R1-01 18 46287781 46287781 G A CTIF Silent p.T366T 0.30 TCGA-ZF-A9R1-01 18 76754241 76754241 C T SALL3 Silent p.N750N 0.37 TCGA-ZF-A9R1-01 19 18378153 18378153 G A KIAA1683 Missense_Mutation p.P66L 0.35 tolerated(0.37) benign(0.001) TCGA-ZF-A9R1-01 19 22363386 22363386 G A ZNF676 Missense_Mutation p.S378L 0.06 deleterious(0.02) probably_damaging(0.966) TCGA-ZF-A9R1-01 19 33588685 33588685 G C GPATCH1 Missense_Mutation p.E293Q 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-ZF-A9R1-01 19 3938638 3938638 C T NMRK2 Silent p.T68T 0.17 TCGA-ZF-A9R1-01 19 40895605 40895605 C G HIPK4 Missense_Mutation p.E69Q 0.04 deleterious(0.04) possibly_damaging(0.56) TCGA-ZF-A9R1-01 19 4817687 4817687 G A TICAM1 Nonsense_Mutation p.Q235* 0.31 TCGA-ZF-A9R1-01 19 48908042 48908042 C T GRIN2D Nonsense_Mutation p.Q173* 0.32 TCGA-ZF-A9R1-01 19 50163073 50163073 G C IRF3 Missense_Mutation p.Q378E 0.43 tolerated_low_confidence(0.08) benign(0.027) TCGA-ZF-A9R1-01 19 52090224 52090224 C G ZNF175 Missense_Mutation p.Q214E 0.29 deleterious(0.02) benign(0.068) TCGA-ZF-A9R1-01 19 5212433 5212433 C T PTPRS Missense_Mutation p.E1562K 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-ZF-A9R1-01 19 54973179 54973182 AAAG - LENG8 3'UTR 0.38 TCGA-ZF-A9R1-01 1 111216307 111216307 G T KCNA3 Missense_Mutation p.F375L 0.36 tolerated(0.06) benign(0.38) TCGA-ZF-A9R1-01 1 119962125 119962125 C T HSD3B2 Missense_Mutation p.S76L 0.31 tolerated(0.05) benign(0.05) TCGA-ZF-A9R1-01 1 147231196 147231196 C T GJA5 Missense_Mutation p.D51N 0.36 deleterious(0.01) possibly_damaging(0.678) TCGA-ZF-A9R1-01 1 155920635 155920635 A T ARHGEF2 Missense_Mutation p.S896R 0.32 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-ZF-A9R1-01 1 167741688 167741688 C T MPZL1 Silent p.V145V 0.31 TCGA-ZF-A9R1-01 1 17570803 17570803 G A PADI1 3'UTR 0.36 TCGA-ZF-A9R1-01 1 182369290 182369290 G C TEDDM1 Missense_Mutation p.L111V 0.05 tolerated(0.07) probably_damaging(0.942) TCGA-ZF-A9R1-01 1 183617264 183617264 C G APOBEC4 Missense_Mutation p.R218T 0.38 deleterious(0.04) probably_damaging(1) TCGA-ZF-A9R1-01 1 19166532 19166532 A C TAS1R2 Missense_Mutation p.V694G 0.30 tolerated(0.23) benign(0.03) TCGA-ZF-A9R1-01 1 196367710 196367710 A T KCNT2 Missense_Mutation p.F426Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R1-01 1 205496927 205496927 C T CDK18 Silent p.F275F 0.29 TCGA-ZF-A9R1-01 1 237947781 237947781 C T RYR2 Nonsense_Mutation p.R4257* 0.35 TCGA-ZF-A9R1-01 1 240371020 240371020 C A FMN2 Missense_Mutation p.L970I 0.17 unknown(0) TCGA-ZF-A9R1-01 1 242042339 242042339 T A EXO1 Silent p.T601T 0.33 TCGA-ZF-A9R1-01 1 247654469 247654469 C T OR2W5 RNA 0.34 TCGA-ZF-A9R1-01 1 25717278 25717278 C T RHCE Missense_Mutation p.G255R 0.23 deleterious(0.02) benign(0.016) TCGA-ZF-A9R1-01 1 32120918 32120918 G A COL16A1 Silent p.S1429S 0.15 TCGA-ZF-A9R1-01 1 38446330 38446330 C A SF3A3 Missense_Mutation p.Q206H 0.34 tolerated(0.16) benign(0.005) TCGA-ZF-A9R1-01 1 38446335 38446335 C A SF3A3 Missense_Mutation p.D205Y 0.34 deleterious(0.01) benign(0.049) TCGA-ZF-A9R1-01 1 44432419 44432419 G A IPO13 Missense_Mutation p.E830K 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9R1-01 1 47276490 47276491 - G CYP4B1 Frame_Shift_Ins p.S66Efs*31 0.21 TCGA-ZF-A9R1-01 1 949846 949846 C T ISG15 Silent p.G162G 0.28 TCGA-ZF-A9R1-01 20 2843564 2843564 C T VPS16 Missense_Mutation p.P439S 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-ZF-A9R1-01 22 24226968 24226968 A G SLC2A11 Missense_Mutation p.N482D 0.32 deleterious(0.01) benign(0.005) TCGA-ZF-A9R1-01 22 42523491 42523491 C T CYP2D6 Missense_Mutation p.M377I 0.24 tolerated(0.08) benign(0.048) TCGA-ZF-A9R1-01 2 100360567 100360567 T G AFF3 Silent p.P371P 0.30 TCGA-ZF-A9R1-01 2 11758778 11758778 C T GREB1 Silent p.V1259V 0.22 TCGA-ZF-A9R1-01 2 137928475 137928475 C - THSD7B Frame_Shift_Del p.R564Vfs*3 0.31 TCGA-ZF-A9R1-01 2 162267942 162267942 C T PSMD14 3'UTR 0.26 TCGA-ZF-A9R1-01 2 176860340 176860340 G C KIAA1715 5'UTR 0.37 TCGA-ZF-A9R1-01 2 188225373 188225373 C T CALCRL Missense_Mutation p.V245M 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-ZF-A9R1-01 2 242793386 242793386 G A PDCD1 Nonsense_Mutation p.R231* 0.38 TCGA-ZF-A9R1-01 2 39250176 39250176 C G SOS1 Missense_Mutation p.D465H 0.34 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R1-01 3 129155374 129155374 C T MBD4 Silent p.L371L 0.37 TCGA-ZF-A9R1-01 3 137942280 137942280 G A ARMC8 Missense_Mutation p.E68K 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-ZF-A9R1-01 3 168845629 168845630 - AC MECOM Intron 0.21 TCGA-ZF-A9R1-01 3 20167474 20167474 C T KAT2B Silent p.H497H 0.30 TCGA-ZF-A9R1-01 3 43760032 43760032 G A ABHD5 3'UTR 0.29 TCGA-ZF-A9R1-01 3 7503307 7503307 G C GRM7 Silent p.G471G 0.05 TCGA-ZF-A9R1-01 4 100518266 100518266 G C MTTP Missense_Mutation p.D318H 0.33 deleterious(0.04) possibly_damaging(0.89) TCGA-ZF-A9R1-01 4 122723856 122723856 T G EXOSC9 Silent p.L63L 0.25 TCGA-ZF-A9R1-01 4 140258081 140258081 G C NAA15 Missense_Mutation p.L73F 0.12 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9R1-01 4 155298473 155298473 C A DCHS2 Missense_Mutation p.V120F 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9R1-01 4 156281423 156281423 T A MAP9 Missense_Mutation p.K316M 0.25 tolerated(0.08) probably_damaging(0.946) TCGA-ZF-A9R1-01 4 156281471 156281471 T A MAP9 Missense_Mutation p.E300V 0.28 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R1-01 4 177081163 177081163 C G WDR17 Missense_Mutation p.I872M 0.26 tolerated(0.33) probably_damaging(0.918) TCGA-ZF-A9R1-01 4 183245189 183245189 C T TENM3 Missense_Mutation p.R6C 0.21 tolerated_low_confidence(0.21) possibly_damaging(0.689) TCGA-ZF-A9R1-01 4 184210770 184210770 G A WWC2 Silent p.L1122L 0.33 TCGA-ZF-A9R1-01 4 48037608 48037619 GTGATCTCCTTG - NIPAL1 In_Frame_Del p.I219_V222del 0.18 TCGA-ZF-A9R1-01 4 74719571 74719571 A T PF4V1 Missense_Mutation p.I58F 0.35 deleterious(0.02) possibly_damaging(0.815) TCGA-ZF-A9R1-01 4 88412020 88412020 C G SPARCL1 Missense_Mutation p.M434I 0.22 tolerated(0.44) benign(0.008) TCGA-ZF-A9R1-01 5 140242842 140242842 C T AC005609.1 Missense_Mutation p.R45Q 0.49 tolerated_low_confidence(0.49) benign(0.417) TCGA-ZF-A9R1-01 5 33684079 33684079 C T ADAMTS12 Missense_Mutation p.R239Q 0.34 tolerated(0.94) benign(0.033) TCGA-ZF-A9R1-01 5 5239831 5239831 G A ADAMTS16 Silent p.R772R 0.28 TCGA-ZF-A9R1-01 6 36652067 36652067 C - CDKN1A Frame_Shift_Del p.F63Lfs*85 0.23 TCGA-ZF-A9R1-01 6 51695724 51695724 T A PKHD1 Missense_Mutation p.E2746V 0.51 deleterious(0.03) possibly_damaging(0.772) TCGA-ZF-A9R1-01 6 51695725 51695725 C T PKHD1 Missense_Mutation p.E2746K 0.51 tolerated(0.2) benign(0.113) TCGA-ZF-A9R1-01 7 110764137 110764137 G A LRRN3 Missense_Mutation p.G437R 0.33 deleterious(0.03) possibly_damaging(0.575) TCGA-ZF-A9R1-01 7 144288604 144288604 G C TPK1 Missense_Mutation p.S138C 0.05 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9R1-01 8 113651024 113651024 G A CSMD3 Missense_Mutation p.P1143S 0.16 tolerated(0.67) benign(0.001) TCGA-ZF-A9R1-01 8 125094608 125094608 G A FER1L6 Missense_Mutation p.D1434N 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-A9R1-01 8 30612199 30612199 G A UBXN8 RNA 0.07 TCGA-ZF-A9R1-01 8 32505705 32505705 G C NRG1 Intron 0.23 TCGA-ZF-A9R1-01 8 85799889 85799889 T G RALYL Missense_Mutation p.C259G 0.20 tolerated(0.32) benign(0.255) TCGA-ZF-A9R1-01 8 92352742 92352742 C G SLC26A7 Missense_Mutation p.S330C 0.19 tolerated(0.06) benign(0.258) TCGA-ZF-A9R1-01 9 115760540 115760540 C T ZNF883 RNA 0.39 TCGA-ZF-A9R1-01 9 5968523 5968523 C T KIAA2026 Missense_Mutation p.E570K 0.49 deleterious(0) benign(0.298) TCGA-ZF-A9R1-01 X 109764771 109764771 C T TDGF1P3 RNA 0.58 TCGA-ZF-A9R1-01 X 136649615 136649615 G C ZIC3 Missense_Mutation p.W255C 0.62 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R1-01 X 37027150 37027150 C T FAM47C Missense_Mutation p.R223C 0.57 tolerated(0.33) benign(0.033) TCGA-ZF-A9R1-01 X 70465902 70465902 G C ZMYM3 Missense_Mutation p.I873M 0.70 deleterious(0) possibly_damaging(0.691) TCGA-ZF-A9R2-01 10 120796685 120796685 G C EIF3A Missense_Mutation p.L1289V 0.48 tolerated_low_confidence(0.13) unknown(0) TCGA-ZF-A9R2-01 10 15146187 15146187 C G RPP38 3'UTR 0.06 TCGA-ZF-A9R2-01 10 18138626 18138626 A C MRC1 Missense_Mutation p.E394D 0.31 tolerated(0.07) probably_damaging(0.971) TCGA-ZF-A9R2-01 10 21823699 21823699 C T MLLT10 Silent p.C42C 0.13 TCGA-ZF-A9R2-01 10 24909082 24909082 G A ARHGAP21 Missense_Mutation p.S581L 0.10 tolerated(0.26) benign(0.207) TCGA-ZF-A9R2-01 10 25887280 25887280 G A GPR158 Missense_Mutation p.A909T 0.54 tolerated(0.09) benign(0.391) TCGA-ZF-A9R2-01 10 31815698 31815698 C G ZEB1 Missense_Mutation p.Q962E 0.29 tolerated(0.06) benign(0.046) TCGA-ZF-A9R2-01 10 33515162 33515162 G A NRP1 Missense_Mutation p.S346L 0.60 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R2-01 10 60461833 60461833 G - BICC1 Splice_Site p.X80_splice 0.23 TCGA-ZF-A9R2-01 10 61815664 61815664 C A ANK3 Missense_Mutation p.D4273Y 0.33 possibly_damaging(0.564) TCGA-ZF-A9R2-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.48 TCGA-ZF-A9R2-01 11 55433035 55433035 G A OR4C6 Silent p.T131T 0.77 TCGA-ZF-A9R2-01 11 62554063 62554063 G A TAF6L Silent p.G388G 0.67 TCGA-ZF-A9R2-01 11 62603002 62603002 C A WDR74 Silent p.V173V 0.67 TCGA-ZF-A9R2-01 11 639902 639902 G A DRD4 Missense_Mutation p.G218D 0.24 deleterious(0.02) unknown(0) TCGA-ZF-A9R2-01 11 763868 763868 C T TALDO1 Silent p.L253L 0.83 TCGA-ZF-A9R2-01 12 111855990 111855990 C T SH2B3 Missense_Mutation p.A14V 0.46 tolerated(0.39) unknown(0) TCGA-ZF-A9R2-01 12 113357287 113357287 C T OAS1 Intron 0.46 TCGA-ZF-A9R2-01 12 113553762 113553762 C G RASAL1 Missense_Mutation p.E276Q 0.44 tolerated(0.6) benign(0.201) TCGA-ZF-A9R2-01 12 21220309 21220309 G A SLCO1B7 Missense_Mutation p.R533Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R2-01 12 41966385 41966385 T C PDZRN4 Missense_Mutation p.Y602H 0.38 tolerated(0.36) benign(0.232) TCGA-ZF-A9R2-01 12 53677948 53677948 A G ESPL1 Missense_Mutation p.T1062A 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-ZF-A9R2-01 12 53917062 53917062 A C ATF7 Nonsense_Mutation p.L411* 0.44 TCGA-ZF-A9R2-01 12 57598982 57598982 A G LRP1 Missense_Mutation p.N3762S 0.15 possibly_damaging(0.676) TCGA-ZF-A9R2-01 12 57882851 57882851 G A MARS Silent p.L53L 0.35 TCGA-ZF-A9R2-01 12 78334906 78334906 C T NAV3 Missense_Mutation p.S136F 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R2-01 12 78513215 78513215 C G NAV3 Missense_Mutation p.T1080S 0.39 deleterious(0.03) benign(0.045) TCGA-ZF-A9R2-01 12 9264799 9264799 G A A2M Missense_Mutation p.R147C 0.09 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R2-01 13 100008408 100008408 C T UBAC2 Intron 0.26 TCGA-ZF-A9R2-01 13 61034520 61034520 G C TDRD3 Missense_Mutation p.G67R 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-A9R2-01 14 102505826 102505826 G C DYNC1H1 Silent p.L3846L 0.54 TCGA-ZF-A9R2-01 14 102505872 102505872 G C DYNC1H1 Missense_Mutation p.D3862H 0.57 possibly_damaging(0.896) TCGA-ZF-A9R2-01 14 20215934 20215934 G A OR4Q3 Silent p.L116L 0.50 TCGA-ZF-A9R2-01 14 23938934 23938934 C T NGDN Silent p.L4L 0.19 TCGA-ZF-A9R2-01 14 36103813 36103813 C T RALGAPA1 Missense_Mutation p.E1482K 0.21 tolerated(0.51) probably_damaging(0.996) TCGA-ZF-A9R2-01 14 39304899 39304899 C T LINC00639 RNA 0.25 TCGA-ZF-A9R2-01 14 70990556 70990556 T C ADAM20 Missense_Mutation p.K357E 0.22 tolerated(0.51) benign(0.001) TCGA-ZF-A9R2-01 14 73967376 73967376 C G HEATR4 Missense_Mutation p.E722Q 0.22 tolerated(0.36) benign(0.033) TCGA-ZF-A9R2-01 14 77844833 77844833 C T SAMD15 Missense_Mutation p.P358S 0.19 tolerated(0.38) benign(0.051) TCGA-ZF-A9R2-01 14 81422127 81422127 G A TSHR Missense_Mutation p.E35K 0.06 tolerated(0.9) benign(0.001) TCGA-ZF-A9R2-01 14 86088903 86088903 G T FLRT2 Missense_Mutation p.A349S 0.61 tolerated(0.1) benign(0.279) TCGA-ZF-A9R2-01 14 94517518 94517518 C T DDX24 3'UTR 0.66 TCGA-ZF-A9R2-01 15 41313305 41313305 C A INO80 Missense_Mutation p.D1023Y 0.40 tolerated(0.11) benign(0.417) TCGA-ZF-A9R2-01 15 48414197 48414197 G C SLC24A5 Missense_Mutation p.E89Q 0.48 deleterious(0.03) benign(0.151) TCGA-ZF-A9R2-01 16 22155637 22155637 C T VWA3A Missense_Mutation p.H888Y 0.41 deleterious(0.03) benign(0.12) TCGA-ZF-A9R2-01 16 2222352 2222352 C T TRAF7 Silent p.F212F 0.22 TCGA-ZF-A9R2-01 16 24567013 24567013 C G RBBP6 Nonsense_Mutation p.Y142* 0.09 TCGA-ZF-A9R2-01 16 2810398 2810398 C T SRRM2 Silent p.F310F 0.39 TCGA-ZF-A9R2-01 16 29994127 29994127 C T TAOK2 Missense_Mutation p.R302W 0.14 deleterious(0) possibly_damaging(0.799) TCGA-ZF-A9R2-01 16 30748865 30748865 C T SRCAP Missense_Mutation p.P2502S 0.48 unknown(0) TCGA-ZF-A9R2-01 16 4747338 4747338 C G ANKS3 Missense_Mutation p.E630D 0.18 tolerated_low_confidence(0.07) benign(0.022) TCGA-ZF-A9R2-01 16 55616991 55616991 C G LPCAT2 Nonsense_Mutation p.S539* 0.27 TCGA-ZF-A9R2-01 16 56396672 56396672 C G AMFR 3'UTR 0.20 TCGA-ZF-A9R2-01 16 67694920 67694920 C T PARD6A 5'UTR 0.85 TCGA-ZF-A9R2-01 16 72991733 72991733 C A ZFHX3 Missense_Mutation p.G771V 0.34 possibly_damaging(0.702) TCGA-ZF-A9R2-01 16 77328940 77328940 C T ADAMTS18 Silent p.K962K 0.42 TCGA-ZF-A9R2-01 17 10216024 10216024 G A MYH13 Missense_Mutation p.A1411V 0.59 tolerated(1) benign(0.001) TCGA-ZF-A9R2-01 17 18250863 18250863 C G SHMT1 Missense_Mutation p.D156H 0.26 deleterious(0.03) benign(0.315) TCGA-ZF-A9R2-01 17 35620623 35620623 T C ACACA Missense_Mutation p.I432V 0.07 tolerated(0.22) benign(0.027) TCGA-ZF-A9R2-01 17 39680424 39680424 C G KRT19 Missense_Mutation p.E307Q 0.48 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R2-01 17 40174451 40174451 C T NKIRAS2 Silent p.Y43Y 0.26 TCGA-ZF-A9R2-01 17 40831702 40831702 C T CCR10 Missense_Mutation p.D320N 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-ZF-A9R2-01 17 40831703 40831703 C T CCR10 Silent p.Q319Q 0.43 TCGA-ZF-A9R2-01 17 43112181 43112181 C T DCAKD Missense_Mutation p.G25S 0.21 deleterious(0) probably_damaging(1) TCGA-ZF-A9R2-01 17 58740747 58740747 G C PPM1D Missense_Mutation p.R551T 0.49 deleterious_low_confidence(0) benign(0.384) TCGA-ZF-A9R2-01 17 62492646 62492646 T A POLG2 Missense_Mutation p.L147F 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-ZF-A9R2-01 17 73488676 73488676 C G KIAA0195 Missense_Mutation p.S573C 0.40 deleterious(0.04) benign(0.443) TCGA-ZF-A9R2-01 17 73906805 73906805 C T FBF1 Silent p.%3D 0.56 TCGA-ZF-A9R2-01 17 74097438 74097438 C G EXOC7 Missense_Mutation p.E111Q 0.46 deleterious(0.05) probably_damaging(0.916) TCGA-ZF-A9R2-01 17 74097785 74097785 C T EXOC7 Missense_Mutation p.D96N 0.49 deleterious(0) possibly_damaging(0.795) TCGA-ZF-A9R2-01 17 77807809 77807809 G C CBX4 Missense_Mutation p.D544E 0.14 deleterious(0) probably_damaging(0.964) TCGA-ZF-A9R2-01 18 3067474 3067474 G A MYOM1 Missense_Mutation p.S1615L 0.71 tolerated(0.63) benign(0.31) TCGA-ZF-A9R2-01 18 52575092 52575092 T C CCDC68 Missense_Mutation p.N292S 0.27 deleterious(0.04) possibly_damaging(0.453) TCGA-ZF-A9R2-01 19 11537746 11537746 G A CCDC151 Silent p.L187L 0.13 TCGA-ZF-A9R2-01 19 18726859 18726859 C T TMEM59L Silent p.V161V 0.54 TCGA-ZF-A9R2-01 19 19416815 19416815 G A SUGP1 Silent p.L127L 0.36 TCGA-ZF-A9R2-01 19 35849962 35849962 T C FFAR3 Missense_Mutation p.L57P 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R2-01 19 40520587 40520587 A T ZNF546 Missense_Mutation p.E470D 0.06 tolerated(0.06) possibly_damaging(0.523) TCGA-ZF-A9R2-01 19 4446708 4446708 C T UBXN6 Missense_Mutation p.E237K 0.43 deleterious(0.01) possibly_damaging(0.858) TCGA-ZF-A9R2-01 19 47423813 47423813 G A ARHGAP35 Silent p.V627V 0.03 TCGA-ZF-A9R2-01 19 47969053 47969053 G C SLC8A2 Missense_Mutation p.S203C 0.38 deleterious(0.04) probably_damaging(0.968) TCGA-ZF-A9R2-01 19 49920479 49920479 G C CCDC155 Missense_Mutation p.R501S 0.47 tolerated_low_confidence(0.11) benign(0.026) TCGA-ZF-A9R2-01 19 54544282 54544282 G C VSTM1 Missense_Mutation p.S215C 0.41 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9R2-01 19 58132285 58132285 G C ZNF134 Silent p.G266G 0.11 TCGA-ZF-A9R2-01 19 8994153 8994153 C T MUC16 Silent p.L13844L 0.33 TCGA-ZF-A9R2-01 19 9065434 9065434 C T MUC16 Missense_Mutation p.E7338K 0.42 unknown(0) TCGA-ZF-A9R2-01 1 156131157 156131157 G T SEMA4A Missense_Mutation p.K277N 0.52 deleterious(0) probably_damaging(0.931) TCGA-ZF-A9R2-01 1 173939703 173939703 C G RC3H1 Missense_Mutation p.R425T 0.34 tolerated(0.06) possibly_damaging(0.848) TCGA-ZF-A9R2-01 1 19166690 19166690 G A TAS1R2 Silent p.F641F 0.24 TCGA-ZF-A9R2-01 1 201861003 201861003 C T SHISA4 3'UTR 0.33 TCGA-ZF-A9R2-01 1 206241569 206241569 C T C1orf186 Missense_Mutation p.E74K 0.38 tolerated(0.1) benign(0.272) TCGA-ZF-A9R2-01 1 207890999 207890999 C T CR1L Silent p.S535S 0.15 TCGA-ZF-A9R2-01 1 236923046 236923046 A T ACTN2 Missense_Mutation p.H775L 0.04 tolerated(0.19) benign(0.017) TCGA-ZF-A9R2-01 1 237494230 237494230 C G RYR2 Missense_Mutation p.S74C 0.32 probably_damaging(0.989) TCGA-ZF-A9R2-01 1 247492647 247492647 C T ZNF496 Silent p.K78K 0.49 TCGA-ZF-A9R2-01 1 25573295 25573295 A C C1orf63 Missense_Mutation p.S54A 0.41 tolerated_low_confidence(0.11) unknown(0) TCGA-ZF-A9R2-01 1 25880540 25880540 G C LDLRAP1 Missense_Mutation p.K72N 0.37 deleterious(0) possibly_damaging(0.906) TCGA-ZF-A9R2-01 1 32691917 32691917 G C EIF3I Missense_Mutation p.Q132H 0.51 tolerated(0.16) benign(0.035) TCGA-ZF-A9R2-01 1 35862172 35862172 C T ZMYM4 Silent p.P977P 0.44 TCGA-ZF-A9R2-01 1 41107541 41107541 C T RIMS3 Silent p.R19R 0.25 TCGA-ZF-A9R2-01 1 52489189 52489189 T C TXNDC12 Missense_Mutation p.K138R 0.54 tolerated(0.1) possibly_damaging(0.7) TCGA-ZF-A9R2-01 1 55172134 55172134 C T MROH7 Silent p.F1197F 0.06 TCGA-ZF-A9R2-01 1 71536642 71536642 T C ZRANB2 Missense_Mutation p.N184S 0.34 tolerated(0.07) possibly_damaging(0.636) TCGA-ZF-A9R2-01 1 75038010 75038010 G A C1orf173 Silent p.N1128N 0.31 TCGA-ZF-A9R2-01 20 25656702 25656702 C A ZNF337 Missense_Mutation p.D408Y 0.14 deleterious(0) probably_damaging(0.961) TCGA-ZF-A9R2-01 20 31830315 31830315 G C BPIFA1 Missense_Mutation p.Q251H 0.37 tolerated(0.07) possibly_damaging(0.524) TCGA-ZF-A9R2-01 20 3193862 3193862 G A ITPA Silent p.Q38Q 0.32 TCGA-ZF-A9R2-01 20 35579967 35579967 G A SAMHD1 Missense_Mutation p.S27F 0.42 tolerated_low_confidence(0.73) benign(0.007) TCGA-ZF-A9R2-01 20 35860769 35860769 C A RPN2 Nonsense_Mutation p.S551* 0.39 TCGA-ZF-A9R2-01 20 47711290 47711290 G C CSE1L Missense_Mutation p.L872F 0.10 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R2-01 21 43230540 43230540 C T PRDM15 Missense_Mutation p.M1240I 0.27 deleterious(0.01) possibly_damaging(0.714) TCGA-ZF-A9R2-01 2 109524314 109524315 - C EDAR Splice_Site p.X321_splice 0.11 TCGA-ZF-A9R2-01 2 166900334 166900334 G A SCN1A Missense_Mutation p.R630W 0.60 deleterious(0.01) probably_damaging(0.992) TCGA-ZF-A9R2-01 2 179556760 179556760 G C TTN Missense_Mutation p.P10582R 0.27 TCGA-ZF-A9R2-01 2 201371692 201371692 C A KCTD18 Silent p.L16L 0.63 TCGA-ZF-A9R2-01 2 225698895 225698895 T C DOCK10 Missense_Mutation p.D979G 0.26 deleterious(0) benign(0.263) TCGA-ZF-A9R2-01 2 32656088 32656088 C G BIRC6 Missense_Mutation p.Q1060E 0.45 probably_damaging(0.93) TCGA-ZF-A9R2-01 3 100029351 100029351 C T TBC1D23 Silent p.I506I 0.36 TCGA-ZF-A9R2-01 3 101450783 101450783 C A CEP97 Silent p.R183R 0.41 TCGA-ZF-A9R2-01 3 121448182 121448182 C T GOLGB1 Silent p.E85E 0.42 TCGA-ZF-A9R2-01 3 123983535 123983535 G C KALRN Missense_Mutation p.E150Q 0.40 deleterious(0) possibly_damaging(0.85) TCGA-ZF-A9R2-01 3 129269620 129269620 G C H1FOO Missense_Mutation p.E259Q 0.49 tolerated(0.48) benign(0.003) TCGA-ZF-A9R2-01 3 140397202 140397202 A G TRIM42 Missense_Mutation p.Y44C 0.11 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R2-01 3 148880481 148880481 T G HPS3 Missense_Mutation p.L766R 0.39 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R2-01 3 151155787 151155787 C G IGSF10 Missense_Mutation p.D2188H 0.49 deleterious(0.02) possibly_damaging(0.89) TCGA-ZF-A9R2-01 3 152554768 152554768 C G P2RY1 3'UTR 0.54 TCGA-ZF-A9R2-01 3 15258962 15258962 C A CAPN7 Nonsense_Mutation p.S81* 0.48 TCGA-ZF-A9R2-01 3 172241168 172241168 T C TNFSF10 Missense_Mutation p.M3V 0.31 tolerated_low_confidence(0.61) benign(0) TCGA-ZF-A9R2-01 3 178938886 178938886 G C PIK3CA Missense_Mutation p.E710Q 0.48 deleterious(0.04) possibly_damaging(0.556) TCGA-ZF-A9R2-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.38 tolerated(0.36) benign(0.4) TCGA-ZF-A9R2-01 3 183756605 183756605 G A HTR3D Missense_Mutation p.E403K 0.49 tolerated(0.22) benign(0.261) TCGA-ZF-A9R2-01 3 189608623 189608623 G C TP63 Silent p.T566T 0.42 TCGA-ZF-A9R2-01 3 39229853 39229853 C G XIRP1 Missense_Mutation p.E362Q 0.34 deleterious(0.01) possibly_damaging(0.827) TCGA-ZF-A9R2-01 3 46449682 46449682 G C CCRL2 Missense_Mutation p.A50P 0.38 tolerated(0.09) benign(0.272) TCGA-ZF-A9R2-01 3 48463175 48463175 C G PLXNB1 Missense_Mutation p.E521Q 0.31 tolerated(0.18) possibly_damaging(0.863) TCGA-ZF-A9R2-01 3 88040024 88040024 C G HTR1F Missense_Mutation p.S42C 0.47 tolerated(0.22) benign(0.011) TCGA-ZF-A9R2-01 4 107845255 107845255 T C DKK2 Silent p.E212E 0.08 TCGA-ZF-A9R2-01 4 107845257 107845257 C T DKK2 Missense_Mutation p.E212K 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-ZF-A9R2-01 4 114274578 114274578 G C ANK2 Missense_Mutation p.E1602Q 0.82 probably_damaging(0.979) TCGA-ZF-A9R2-01 4 123373004 123373004 G A IL2 Missense_Mutation p.T122I 0.07 tolerated(0.06) benign(0.074) TCGA-ZF-A9R2-01 4 159640404 159640404 G C PPID Missense_Mutation p.F87L 0.78 deleterious(0.01) possibly_damaging(0.7) TCGA-ZF-A9R2-01 4 164394267 164394267 C A TKTL2 Missense_Mutation p.C207F 0.82 tolerated(0.49) possibly_damaging(0.631) TCGA-ZF-A9R2-01 4 1803568 1803568 C G FGFR3 Missense_Mutation p.S249C 0.93 deleterious(0.01) possibly_damaging(0.594) TCGA-ZF-A9R2-01 4 48581003 48581003 G C FRYL Missense_Mutation p.Q839E 0.04 tolerated(0.17) possibly_damaging(0.62) TCGA-ZF-A9R2-01 4 80246861 80246861 C A NAA11 Silent p.L57L 0.13 TCGA-ZF-A9R2-01 4 83280673 83280673 G C HNRNPD Nonsense_Mutation p.S137* 0.82 TCGA-ZF-A9R2-01 4 88731758 88731758 G C IBSP Missense_Mutation p.E83Q 0.15 tolerated(0.1) probably_damaging(0.945) TCGA-ZF-A9R2-01 5 1466949 1466949 G C LPCAT1 Silent p.L445L 0.29 TCGA-ZF-A9R2-01 5 150646928 150646928 G A GM2A Silent p.G166G 0.08 TCGA-ZF-A9R2-01 5 156608027 156608027 G C ITK Missense_Mutation p.K13N 0.05 deleterious(0) probably_damaging(1) TCGA-ZF-A9R2-01 5 158586021 158586021 G A RNF145 Missense_Mutation p.T580M 0.05 deleterious(0.04) probably_damaging(0.992) TCGA-ZF-A9R2-01 5 7835608 7835608 C T C5orf49 Missense_Mutation p.G51R 0.53 tolerated(0.15) probably_damaging(0.989) TCGA-ZF-A9R2-01 5 78426959 78426959 T G BHMT 3'UTR 0.24 TCGA-ZF-A9R2-01 5 94863760 94863760 G A TTC37 Missense_Mutation p.S364L 0.07 tolerated(0.08) benign(0.04) TCGA-ZF-A9R2-01 6 101110332 101110332 C T ASCC3 Silent p.Q789Q 0.18 TCGA-ZF-A9R2-01 6 112025302 112025302 C G FYN Missense_Mutation p.W149C 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-A9R2-01 6 133827357 133827357 T C EYA4 Intron 0.62 TCGA-ZF-A9R2-01 6 161527725 161527725 G A MAP3K4 Missense_Mutation p.G1346R 0.65 deleterious(0) probably_damaging(1) TCGA-ZF-A9R2-01 6 27925349 27925349 G A OR2B6 Missense_Mutation p.E111K 0.82 deleterious(0) possibly_damaging(0.899) TCGA-ZF-A9R2-01 6 32821421 32821421 C G TAP1 Missense_Mutation p.R58P 0.92 tolerated_low_confidence(0.13) benign(0.038) TCGA-ZF-A9R2-01 6 36270222 36270222 G C PNPLA1 Missense_Mutation p.E454Q 0.11 tolerated_low_confidence(0.09) benign(0.157) TCGA-ZF-A9R2-01 6 36652024 36652024 G A CDKN1A Nonsense_Mutation p.W49* 0.76 TCGA-ZF-A9R2-01 6 36652140 36652140 G A CDKN1A Missense_Mutation p.E88K 1.00 tolerated(0.33) benign(0.036) TCGA-ZF-A9R2-01 6 36652260 36652260 G A CDKN1A Missense_Mutation p.E128K 0.56 tolerated(0.15) possibly_damaging(0.557) TCGA-ZF-A9R2-01 6 40400191 40400191 G T LRFN2 Missense_Mutation p.S221Y 0.11 deleterious(0) possibly_damaging(0.905) TCGA-ZF-A9R2-01 6 42890772 42890772 C T PTCRA Silent p.G22G 0.22 TCGA-ZF-A9R2-01 6 43307619 43307619 G C ZNF318 Missense_Mutation p.L1373V 0.16 probably_damaging(0.999) TCGA-ZF-A9R2-01 7 103029793 103029793 T C SLC26A5 Missense_Mutation p.T464A 0.17 tolerated(0.3) benign(0.325) TCGA-ZF-A9R2-01 7 120935617 120935617 C T CPED1 Nonsense_Mutation p.R998* 0.29 TCGA-ZF-A9R2-01 7 128481540 128481540 C A FLNC Silent p.T680T 0.26 TCGA-ZF-A9R2-01 7 136700666 136700666 C G CHRM2 Missense_Mutation p.Q352E 0.26 tolerated(0.94) benign(0.004) TCGA-ZF-A9R2-01 7 148950974 148950974 C T ZNF212 Missense_Mutation p.S319F 0.53 deleterious(0.01) probably_damaging(0.914) TCGA-ZF-A9R2-01 7 149481978 149481978 C T SSPO Intron 0.25 TCGA-ZF-A9R2-01 7 38816347 38816347 T C VPS41 Missense_Mutation p.S272G 0.58 tolerated(0.44) benign(0.352) TCGA-ZF-A9R2-01 7 44747679 44747679 C T OGDH 3'UTR 0.55 TCGA-ZF-A9R2-01 7 73663415 73663415 G C RFC2 Missense_Mutation p.L87V 0.19 deleterious(0.05) benign(0.32) TCGA-ZF-A9R2-01 7 87856226 87856226 G A SRI Nonsense_Mutation p.Q2* 0.16 TCGA-ZF-A9R2-01 7 91504047 91504047 T C MTERF Missense_Mutation p.M21V 0.21 deleterious_low_confidence(0.01) benign(0.098) TCGA-ZF-A9R2-01 8 12040292 12040292 C G FAM86B1 3'UTR 0.12 TCGA-ZF-A9R2-01 8 143922583 143922583 C T GML Silent p.N41N 0.13 TCGA-ZF-A9R2-01 8 21960404 21960404 C G FAM160B2 Missense_Mutation p.R732G 0.21 tolerated_low_confidence(0.06) benign(0.054) TCGA-ZF-A9R2-01 8 40011376 40011376 G C C8orf4 3'UTR 0.49 TCGA-ZF-A9R2-01 8 54142044 54142044 C A OPRK1 Missense_Mutation p.G319V 0.44 deleterious(0) probably_damaging(1) TCGA-ZF-A9R2-01 8 623493 623493 C A ERICH1 Nonsense_Mutation p.E287* 0.39 TCGA-ZF-A9R2-01 9 111658811 111658811 C G IKBKAP Missense_Mutation p.D901H 0.77 deleterious(0) probably_damaging(0.989) TCGA-ZF-A9R2-01 9 77614757 77614757 G C C9orf41 Missense_Mutation p.P207R 0.73 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R2-01 9 86590437 86590437 C T HNRNPK Intron 0.69 TCGA-ZF-A9R2-01 X 111019793 111019793 T C TRPC5 Silent p.K890K 0.85 TCGA-ZF-A9R2-01 X 115593127 115593127 C G CT83 Silent p.V41V 0.89 TCGA-ZF-A9R2-01 X 123200023 123200023 A G STAG2 Splice_Site p.X699_splice 0.89 TCGA-ZF-A9R2-01 X 205419 205419 G T PLCXD1 Silent p.T49T 0.36 TCGA-ZF-A9R2-01 X 44910952 44910952 A G KDM6A Splice_Site p.X219_splice 0.76 TCGA-ZF-A9R2-01 X 51640908 51640908 G A MAGED1 Silent p.L584L 1.00 TCGA-ZF-A9R2-01 X 54264805 54264805 C G WNK3 Missense_Mutation p.M1328I 0.80 tolerated(0.16) benign(0.016) TCGA-ZF-A9R2-01 X 73065807 73065807 A T XIST RNA 0.80 TCGA-ZF-A9R3-01 10 118713581 118713581 G C KIAA1598 Silent p.V136V 0.57 TCGA-ZF-A9R3-01 10 15290650 15290650 C G FAM171A1 Missense_Mutation p.D248H 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-ZF-A9R3-01 10 25886731 25886731 G A GPR158 Missense_Mutation p.E726K 0.62 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R3-01 10 7611659 7611659 G A ITIH5 Silent p.L707L 0.19 TCGA-ZF-A9R3-01 10 79397076 79397076 G A KCNMA1 Missense_Mutation p.R109W 0.19 deleterious(0) probably_damaging(0.968) TCGA-ZF-A9R3-01 10 90351165 90351165 G C LIPJ Missense_Mutation p.D14H 0.45 tolerated(0.1) possibly_damaging(0.905) TCGA-ZF-A9R3-01 10 99683047 99683047 G A CRTAC1 Missense_Mutation p.R178C 0.62 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R3-01 11 108593995 108593995 G C DDX10 Missense_Mutation p.E591Q 0.53 tolerated(0.19) benign(0.432) TCGA-ZF-A9R3-01 11 117982463 117982463 G A TMPRSS4 Silent p.G197G 0.33 TCGA-ZF-A9R3-01 11 120732772 120732772 G A GRIK4 Silent p.Q283Q 0.38 TCGA-ZF-A9R3-01 11 14277229 14277229 C T SPON1 RNA 0.32 TCGA-ZF-A9R3-01 11 35016737 35016737 T C PDHX 3'UTR 0.40 TCGA-ZF-A9R3-01 11 46637624 46637624 G A HARBI1 Missense_Mutation p.A55V 0.17 tolerated(0.25) benign(0.023) TCGA-ZF-A9R3-01 11 4936343 4936343 C A OR51G2 Missense_Mutation p.C184F 0.28 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R3-01 11 65267658 65267658 T A MALAT1 RNA 0.33 TCGA-ZF-A9R3-01 11 6593220 6593220 C T DNHD1 3'UTR 0.35 TCGA-ZF-A9R3-01 11 75907584 75907584 G A WNT11 Missense_Mutation p.R88C 0.05 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R3-01 12 116421305 116421305 C T MED13L Silent p.L1524L 0.57 TCGA-ZF-A9R3-01 12 49420203 49420204 - C KMT2D Frame_Shift_Ins p.L5183Pfs*16 0.21 TCGA-ZF-A9R3-01 12 55886505 55886505 C T OR6C68 Missense_Mutation p.T115I 0.32 tolerated_low_confidence(0.35) benign(0.01) TCGA-ZF-A9R3-01 12 72030288 72030288 A G ZFC3H1 Silent p.L694L 0.34 TCGA-ZF-A9R3-01 12 88500580 88500580 T A CEP290 Missense_Mutation p.I897L 0.41 benign(0.003) TCGA-ZF-A9R3-01 12 977982 977982 G C WNK1 Intron 0.24 TCGA-ZF-A9R3-01 13 32868660 32868660 G A FRY Silent p.L2912L 0.47 TCGA-ZF-A9R3-01 13 36410271 36410271 C T DCLK1 Silent p.S376S 0.29 TCGA-ZF-A9R3-01 13 41636841 41636841 G C WBP4 Missense_Mutation p.D22H 0.37 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9R3-01 14 21052598 21052598 G A RNASE11 Silent p.G12G 0.31 TCGA-ZF-A9R3-01 14 31074778 31074778 A T G2E3 Nonsense_Mutation p.K360* 0.29 TCGA-ZF-A9R3-01 14 52178294 52178295 - G FRMD6 Frame_Shift_Ins p.I256Nfs*9 0.29 TCGA-ZF-A9R3-01 14 75189979 75189979 C G FCF1 Missense_Mutation p.I99M 0.28 deleterious(0.03) possibly_damaging(0.717) TCGA-ZF-A9R3-01 15 23932431 23932431 C T NDN 5'UTR 0.39 TCGA-ZF-A9R3-01 15 40659810 40659810 C T DISP2 Silent p.I499I 0.29 TCGA-ZF-A9R3-01 15 50518205 50518205 G A SLC27A2 Silent p.L396L 0.46 TCGA-ZF-A9R3-01 15 81427644 81427644 A G C15orf26 Missense_Mutation p.K35E 0.42 deleterious(0.02) benign(0.031) TCGA-ZF-A9R3-01 15 99467161 99467161 A G IGF1R Missense_Mutation p.I848V 0.46 tolerated(1) benign(0.001) TCGA-ZF-A9R3-01 16 15814764 15814764 G - MYH11 Frame_Shift_Del p.Q1582Sfs*52 0.21 TCGA-ZF-A9R3-01 16 4393217 4393217 C G PAM16 Missense_Mutation p.E27Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R3-01 16 49671201 49671201 G A ZNF423 Missense_Mutation p.S621L 0.38 tolerated(0.24) benign(0.001) TCGA-ZF-A9R3-01 16 58583728 58583728 G C CNOT1 Silent p.V1139V 0.39 TCGA-ZF-A9R3-01 16 71894426 71894426 C T ZNF821 Missense_Mutation p.R245H 0.05 deleterious(0) probably_damaging(0.952) TCGA-ZF-A9R3-01 16 75149468 75149468 C T LDHD Missense_Mutation p.G55R 0.45 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9R3-01 16 77325309 77325309 C T ADAMTS18 Missense_Mutation p.G1086R 0.41 deleterious(0) probably_damaging(0.989) TCGA-ZF-A9R3-01 16 89619471 89619471 C G SPG7 Missense_Mutation p.L622V 0.36 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R3-01 17 19619812 19619812 G A SLC47A2 Silent p.L19L 0.50 TCGA-ZF-A9R3-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.06 tolerated(0.19) benign(0.022) TCGA-ZF-A9R3-01 17 59760893 59760893 C T BRIP1 Missense_Mutation p.E1172K 0.88 tolerated_low_confidence(0.19) benign(0.035) TCGA-ZF-A9R3-01 17 63554321 63554321 C G AXIN2 Missense_Mutation p.E140Q 0.93 tolerated(0.09) possibly_damaging(0.728) TCGA-ZF-A9R3-01 17 67152025 67152025 T A ABCA10 Missense_Mutation p.E1166V 0.23 deleterious(0.05) benign(0.127) TCGA-ZF-A9R3-01 17 73974953 73974953 G C ACOX1 Intron 0.09 TCGA-ZF-A9R3-01 17 76183102 76183102 G T TK1 5'UTR 0.65 TCGA-ZF-A9R3-01 17 76183502 76183502 G A AFMID Silent p.K17K 0.66 TCGA-ZF-A9R3-01 17 79618682 79618682 C G PDE6G Silent p.L60L 0.52 TCGA-ZF-A9R3-01 17 80017830 80017830 G C DUS1L Missense_Mutation p.L388V 0.21 tolerated(0.31) benign(0.024) TCGA-ZF-A9R3-01 17 8135439 8135439 C T CTC1 Missense_Mutation p.E723K 0.62 tolerated(0.09) benign(0.276) TCGA-ZF-A9R3-01 19 11285341 11285341 C T KANK2 Missense_Mutation p.E634K 0.40 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R3-01 19 11285369 11285369 C T KANK2 Splice_Site p.X625_splice 0.27 TCGA-ZF-A9R3-01 19 11892519 11892519 C G ZNF441 Nonsense_Mutation p.S627* 0.42 TCGA-ZF-A9R3-01 19 17735639 17735639 G A UNC13A Missense_Mutation p.T1399M 0.25 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R3-01 19 44377944 44377944 C G ZNF404 Missense_Mutation p.R141T 0.36 tolerated(0.44) benign(0.003) TCGA-ZF-A9R3-01 19 47422106 47422106 C T ARHGAP35 Silent p.L58L 0.41 TCGA-ZF-A9R3-01 19 49671814 49671814 C T TRPM4 Missense_Mutation p.S206L 0.45 deleterious(0.03) benign(0.004) TCGA-ZF-A9R3-01 19 53577475 53577475 C T ZNF160 Silent p.G63G 0.39 TCGA-ZF-A9R3-01 19 56249465 56249465 C T NLRP9 Missense_Mutation p.M92I 0.41 tolerated(0.32) benign(0.002) TCGA-ZF-A9R3-01 19 7601354 7601354 C A PNPLA6 Missense_Mutation p.S121Y 0.49 deleterious(0) benign(0.141) TCGA-ZF-A9R3-01 1 114454209 114454209 G A DCLRE1B Missense_Mutation p.R332K 0.22 tolerated(0.58) benign(0.002) TCGA-ZF-A9R3-01 1 12443051 12443051 C T VPS13D Missense_Mutation p.S3736F 0.20 probably_damaging(0.991) TCGA-ZF-A9R3-01 1 165638534 165638534 G A ALDH9A1 Nonsense_Mutation p.R362* 0.44 TCGA-ZF-A9R3-01 1 174987587 174987587 G C MRPS14 Silent p.L57L 0.31 TCGA-ZF-A9R3-01 1 177247923 177247923 T G BRINP2 Splice_Site p.X412_splice 0.21 TCGA-ZF-A9R3-01 1 179081513 179081513 C T ABL2 Missense_Mutation p.D528N 0.50 deleterious(0.02) possibly_damaging(0.823) TCGA-ZF-A9R3-01 1 20972134 20972134 G - PINK1 Frame_Shift_Del p.E348Kfs*16 0.31 TCGA-ZF-A9R3-01 20 25656605 25656605 C T ZNF337 Missense_Mutation p.G440E 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-ZF-A9R3-01 20 48500541 48500541 G A SLC9A8 Missense_Mutation p.E493K 0.23 tolerated(0.32) benign(0.016) TCGA-ZF-A9R3-01 22 39884006 39884006 C A MGAT3 Missense_Mutation p.F218L 0.21 tolerated(0.32) benign(0.053) TCGA-ZF-A9R3-01 2 106710609 106710609 G A UXS1 Missense_Mutation p.P384L 0.30 tolerated(0.1) benign(0.039) TCGA-ZF-A9R3-01 2 20647449 20647449 C A RHOB Missense_Mutation p.P75T 0.48 deleterious(0) possibly_damaging(0.558) TCGA-ZF-A9R3-01 2 223158461 223158461 G A PAX3 Intron 0.47 TCGA-ZF-A9R3-01 3 121724236 121724236 G C ILDR1 Nonsense_Mutation p.Y78* 0.41 TCGA-ZF-A9R3-01 3 121724238 121724238 A T ILDR1 Missense_Mutation p.Y78N 0.44 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R3-01 3 127390288 127390288 G C PODXL2 Missense_Mutation p.Q479H 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-ZF-A9R3-01 3 184076598 184076598 C T CLCN2 Missense_Mutation p.C75Y 0.14 tolerated(0.08) probably_damaging(0.984) TCGA-ZF-A9R3-01 3 195595153 195595153 C A TNK2 Silent p.A735A 0.48 TCGA-ZF-A9R3-01 3 51929022 51929022 A G IQCF1 Missense_Mutation p.F168L 0.04 tolerated(0.21) benign(0.006) TCGA-ZF-A9R3-01 3 62278303 62278303 G C PTPRG Intron 0.32 TCGA-ZF-A9R3-01 3 97664163 97664163 C A MINA Missense_Mutation p.L421F 0.32 tolerated(0.07) benign(0.072) TCGA-ZF-A9R3-01 4 151223780 151223780 C T LRBA Missense_Mutation p.G2683S 0.31 tolerated(0.46) benign(0.404) TCGA-ZF-A9R3-01 5 115298620 115298620 C T AQPEP Silent p.L102L 0.43 TCGA-ZF-A9R3-01 5 1219752 1219752 C G SLC6A19 Missense_Mutation p.S504C 0.46 deleterious(0) possibly_damaging(0.841) TCGA-ZF-A9R3-01 5 140176410 140176410 C T PCDHA2 Missense_Mutation p.P621S 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-ZF-A9R3-01 5 140229749 140229749 G A PCDHA9 Missense_Mutation p.D557N 0.23 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-ZF-A9R3-01 5 140731361 140731361 G A PCDHGB1 Missense_Mutation p.A512T 0.42 deleterious(0) probably_damaging(1) TCGA-ZF-A9R3-01 5 175959433 175959433 G A RNF44 Missense_Mutation p.S14F 0.31 deleterious_low_confidence(0.03) benign(0.008) TCGA-ZF-A9R3-01 5 34908976 34908976 C G RAD1 Missense_Mutation p.R248T 0.41 tolerated(0.08) probably_damaging(0.913) TCGA-ZF-A9R3-01 6 151936602 151936602 G A CCDC170 Missense_Mutation p.A579T 0.28 tolerated(1) benign(0.012) TCGA-ZF-A9R3-01 6 152527421 152527421 G A SYNE1 Missense_Mutation p.S7634L 0.38 benign(0.069) TCGA-ZF-A9R3-01 6 33139508 33139508 T A COL11A2 Silent p.A958A 0.25 TCGA-ZF-A9R3-01 7 138554445 138554445 G A KIAA1549 Silent p.R1538R 0.20 TCGA-ZF-A9R3-01 7 16640456 16640456 G C ANKMY2 Missense_Mutation p.S419C 0.30 tolerated_low_confidence(0.08) benign(0.001) TCGA-ZF-A9R3-01 7 45025006 45025006 T C SNHG15 RNA 0.45 TCGA-ZF-A9R3-01 7 64152292 64152292 A G ZNF107 5'UTR 0.23 TCGA-ZF-A9R3-01 7 91758214 91758214 C T CYP51A1 Missense_Mutation p.A150T 0.25 deleterious(0.02) probably_damaging(1) TCGA-ZF-A9R3-01 8 144895693 144895693 G A SCRIB Silent p.L150L 0.11 TCGA-ZF-A9R3-01 8 145150823 145150823 G C CYC1 Missense_Mutation p.G73R 0.06 deleterious(0.01) possibly_damaging(0.753) TCGA-ZF-A9R3-01 8 2966266 2966266 C T CSMD1 Missense_Mutation p.G2205S 0.25 probably_damaging(1) TCGA-ZF-A9R3-01 8 38205204 38205204 C G WHSC1L1 Missense_Mutation p.Q162H 0.85 tolerated(0.37) probably_damaging(0.998) TCGA-ZF-A9R3-01 8 59728116 59728116 A G TOX Silent p.S391S 0.49 TCGA-ZF-A9R3-01 9 125588973 125588973 G A PDCL Nonsense_Mutation p.R32* 0.66 TCGA-ZF-A9R3-01 9 135779172 135779172 G A TSC1 Nonsense_Mutation p.R692* 0.69 TCGA-ZF-A9R3-01 9 139620598 139620598 G A FAM69B 3'Flank 0.80 TCGA-ZF-A9R3-01 X 114536557 114536557 A T LUZP4 Missense_Mutation p.D31V 0.39 deleterious(0) possibly_damaging(0.592) TCGA-ZF-A9R3-01 X 115304054 115304054 C T AGTR2 Missense_Mutation p.S174F 0.33 deleterious(0.01) probably_damaging(0.959) TCGA-ZF-A9R3-01 X 125299768 125299768 G A DCAF12L2 Missense_Mutation p.T47M 0.24 deleterious(0.03) benign(0.346) TCGA-ZF-A9R3-01 X 153172088 153172088 G T AVPR2 Missense_Mutation p.C341F 0.15 tolerated(0.09) possibly_damaging(0.877) TCGA-ZF-A9R3-01 X 18842187 18842187 G A PPEF1 Missense_Mutation p.E550K 0.34 tolerated(0.29) benign(0.008) TCGA-ZF-A9R3-01 X 44833960 44833960 G T KDM6A Missense_Mutation p.K128N 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-ZF-A9R3-01 X 48650370 48650370 G A GATA1 Missense_Mutation p.E114K 0.17 tolerated(0.75) benign(0.079) TCGA-ZF-A9R3-01 X 53460771 53460771 A G HSD17B10 Silent p.L30L 0.41 TCGA-ZF-A9R3-01 X 88009143 88009143 A C CPXCR1 Missense_Mutation p.Q243P 0.46 tolerated(0.13) benign(0.014) TCGA-ZF-A9R4-01 10 102707556 102707556 G C FAM178A Missense_Mutation p.K1024N 0.29 deleterious(0.02) benign(0.106) TCGA-ZF-A9R4-01 10 103343316 103343316 G A POLL Silent p.F338F 0.60 TCGA-ZF-A9R4-01 10 103343319 103343319 G A POLL Silent p.L337L 0.60 TCGA-ZF-A9R4-01 10 108377934 108377934 G T SORCS1 Missense_Mutation p.Q965K 0.60 deleterious(0) benign(0.359) TCGA-ZF-A9R4-01 10 111878402 111878402 G A ADD3 Missense_Mutation p.D209N 0.53 tolerated(0.7) possibly_damaging(0.708) TCGA-ZF-A9R4-01 10 111883999 111883999 G A ADD3 Silent p.R456R 0.49 TCGA-ZF-A9R4-01 10 119303172 119303172 C T EMX2 Missense_Mutation p.H132Y 0.28 deleterious(0.01) possibly_damaging(0.635) TCGA-ZF-A9R4-01 10 30625885 30625885 G A MTPAP Silent p.L209L 0.51 TCGA-ZF-A9R4-01 10 50724554 50724554 C T ERCC6-PGBD3 Missense_Mutation p.E671K 0.22 tolerated_low_confidence(0.16) unknown(0) TCGA-ZF-A9R4-01 10 62634778 62634778 C T RHOBTB1 Silent p.L583L 0.23 TCGA-ZF-A9R4-01 11 104901142 104901142 C T CASP1 Missense_Mutation p.G181E 0.63 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 11 113711387 113711387 C G USP28 Missense_Mutation p.R156T 0.39 deleterious(0.02) possibly_damaging(0.69) TCGA-ZF-A9R4-01 11 113934475 113934475 G A ZBTB16 Silent p.R151R 0.25 TCGA-ZF-A9R4-01 11 114568875 114568875 G A NXPE2 Missense_Mutation p.E81K 0.54 deleterious(0.03) possibly_damaging(0.616) TCGA-ZF-A9R4-01 11 117332163 117332163 C T DSCAML1 Intron 0.23 TCGA-ZF-A9R4-01 11 117864018 117864018 C T IL10RA Nonsense_Mutation p.Q144* 0.35 TCGA-ZF-A9R4-01 11 118342400 118342400 C G KMT2A Missense_Mutation p.R176G 0.67 probably_damaging(0.968) TCGA-ZF-A9R4-01 11 118342446 118342446 C G KMT2A Nonsense_Mutation p.S191* 0.55 TCGA-ZF-A9R4-01 11 124481614 124481614 C T PANX3 Silent p.F54F 0.31 TCGA-ZF-A9R4-01 11 13424777 13424777 C G BTBD10 Missense_Mutation p.R352T 0.24 deleterious(0) possibly_damaging(0.669) TCGA-ZF-A9R4-01 11 28119532 28119532 A G KIF18A 5'UTR 0.28 TCGA-ZF-A9R4-01 11 47758243 47758243 C A FNBP4 Missense_Mutation p.E502D 0.48 tolerated(0.12) benign(0.033) TCGA-ZF-A9R4-01 11 56431340 56431341 - T OR5AR1 Frame_Shift_Ins p.L63Pfs*8 0.22 TCGA-ZF-A9R4-01 11 62546432 62546432 G A TAF6L Missense_Mutation p.M176I 0.29 tolerated(0.07) benign(0.052) TCGA-ZF-A9R4-01 11 63978229 63978229 C T FERMT3 Missense_Mutation p.R103W 0.48 deleterious(0.01) possibly_damaging(0.462) TCGA-ZF-A9R4-01 11 65340946 65340946 C T FAM89B Missense_Mutation p.S135L 0.74 deleterious(0) probably_damaging(0.962) TCGA-ZF-A9R4-01 11 66291252 66291252 G C BBS1 Missense_Mutation p.E337Q 0.43 deleterious(0.04) possibly_damaging(0.881) TCGA-ZF-A9R4-01 11 66384203 66384203 C T RBM14-RBM4 Silent p.F4F 0.52 TCGA-ZF-A9R4-01 11 72293530 72293530 G A PDE2A Silent p.F603F 0.51 TCGA-ZF-A9R4-01 11 75133737 75133737 C G KLHL35 Missense_Mutation p.D547H 0.28 deleterious(0.04) unknown(0) TCGA-ZF-A9R4-01 11 799999 799999 C T PIDD Missense_Mutation p.E764K 0.48 tolerated(0.15) benign(0.002) TCGA-ZF-A9R4-01 11 8060557 8060557 G A TUB Missense_Mutation p.R46Q 0.60 deleterious_low_confidence(0) benign(0.018) TCGA-ZF-A9R4-01 12 108154313 108154313 G C PRDM4 5'UTR 0.39 TCGA-ZF-A9R4-01 12 112642326 112642326 C T HECTD4 Missense_Mutation p.E2599K 0.54 probably_damaging(0.994) TCGA-ZF-A9R4-01 12 121880471 121880471 C T KDM2B Missense_Mutation p.E925K 0.52 tolerated_low_confidence(0.06) possibly_damaging(0.738) TCGA-ZF-A9R4-01 12 25398262 25398262 C G KRAS Missense_Mutation p.L19F 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9R4-01 12 33560254 33560254 G T SYT10 Missense_Mutation p.Q183K 0.44 tolerated(0.12) benign(0.015) TCGA-ZF-A9R4-01 12 3649871 3649871 G A PRMT8 Missense_Mutation p.G59S 0.18 tolerated(0.08) benign(0.013) TCGA-ZF-A9R4-01 12 43840442 43840442 G A ADAMTS20 Missense_Mutation p.S718F 0.39 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 12 48499378 48499378 C G PFKM 5'Flank 0.34 TCGA-ZF-A9R4-01 12 49087306 49087306 G C CCNT1 Missense_Mutation p.S564C 0.43 deleterious(0.01) possibly_damaging(0.728) TCGA-ZF-A9R4-01 12 49419968 49419968 G A KMT2D Nonsense_Mutation p.Q5261* 0.37 TCGA-ZF-A9R4-01 12 49422719 49422719 A T KMT2D Nonsense_Mutation p.Y4758* 0.42 TCGA-ZF-A9R4-01 12 56536420 56536420 C T ESYT1 Missense_Mutation p.S941F 0.38 deleterious(0.03) benign(0.008) TCGA-ZF-A9R4-01 12 57423252 57423252 G C MYO1A Silent p.L948L 0.41 TCGA-ZF-A9R4-01 12 71966646 71966646 G A LGR5 Missense_Mutation p.E385K 0.48 tolerated(0.32) benign(0.038) TCGA-ZF-A9R4-01 12 76780014 76780014 G A OSBPL8 Silent p.G489G 0.41 TCGA-ZF-A9R4-01 12 78604229 78604229 A T NAV3 Missense_Mutation p.S2342C 0.40 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 12 90024303 90024303 C T ATP2B1 Missense_Mutation p.E303K 0.43 tolerated(1) benign(0) TCGA-ZF-A9R4-01 12 96418259 96418259 C G LTA4H Missense_Mutation p.E160Q 0.35 tolerated(0.36) benign(0.057) TCGA-ZF-A9R4-01 12 97334267 97334267 G A NEDD1 Missense_Mutation p.D407N 0.39 tolerated(0.21) probably_damaging(0.983) TCGA-ZF-A9R4-01 12 98849649 98849649 G A SLC9A7P1 RNA 0.49 TCGA-ZF-A9R4-01 12 98849730 98849730 G A SLC9A7P1 RNA 0.42 TCGA-ZF-A9R4-01 12 98850342 98850342 G A SLC9A7P1 RNA 0.44 TCGA-ZF-A9R4-01 13 114202701 114202701 C T TMCO3 Silent p.A618A 0.66 TCGA-ZF-A9R4-01 13 31035388 31035388 C T HMGB1 3'UTR 0.42 TCGA-ZF-A9R4-01 13 33320191 33320191 G A PDS5B Missense_Mutation p.E897K 0.56 deleterious(0.01) possibly_damaging(0.481) TCGA-ZF-A9R4-01 13 38229288 38229288 G C TRPC4 Missense_Mutation p.I607M 0.31 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9R4-01 13 38229388 38229388 G A TRPC4 Missense_Mutation p.S574L 0.53 deleterious(0) probably_damaging(0.958) TCGA-ZF-A9R4-01 13 77595934 77595934 G A FBXL3 Missense_Mutation p.S21F 0.16 tolerated_low_confidence(0.51) benign(0.068) TCGA-ZF-A9R4-01 13 77595961 77595961 G A FBXL3 Missense_Mutation p.S12L 0.23 tolerated_low_confidence(0.59) benign(0.002) TCGA-ZF-A9R4-01 13 95727734 95727734 C T ABCC4 Missense_Mutation p.E920K 0.31 deleterious(0.02) probably_damaging(0.984) TCGA-ZF-A9R4-01 14 102372852 102372852 G C PPP2R5C Missense_Mutation p.K410N 0.55 deleterious(0.01) possibly_damaging(0.652) TCGA-ZF-A9R4-01 14 106174870 106174870 C T IGHA1 Missense_Mutation p.G45R 0.53 tolerated(0.13) benign(0.401) TCGA-ZF-A9R4-01 14 23344686 23344686 G C LRP10 Missense_Mutation p.D177H 0.60 deleterious(0.04) benign(0.01) TCGA-ZF-A9R4-01 14 23902831 23902831 G C MYH7 Silent p.V37V 0.23 TCGA-ZF-A9R4-01 14 24624500 24624500 C A RNF31 Missense_Mutation p.D755E 0.16 tolerated(1) benign(0.004) TCGA-ZF-A9R4-01 14 31585597 31585597 C T HECTD1 Silent p.L1821L 0.26 TCGA-ZF-A9R4-01 14 37198766 37198766 G A SLC25A21 Silent p.F92F 0.58 TCGA-ZF-A9R4-01 14 38724400 38724400 G A CLEC14A Silent p.G276G 0.58 TCGA-ZF-A9R4-01 14 51382160 51382160 C T PYGL Missense_Mutation p.E433K 0.36 deleterious(0.03) benign(0.095) TCGA-ZF-A9R4-01 14 59108358 59108358 C G DACT1 Missense_Mutation p.S176C 0.58 deleterious(0) benign(0.396) TCGA-ZF-A9R4-01 14 77275974 77275974 G A ANGEL1 Missense_Mutation p.T26I 0.50 deleterious(0.01) possibly_damaging(0.674) TCGA-ZF-A9R4-01 14 88945788 88945788 C T PTPN21 Missense_Mutation p.E663K 0.60 tolerated_low_confidence(0.28) benign(0.027) TCGA-ZF-A9R4-01 15 24924112 24924112 C T NPAP1 Missense_Mutation p.S1033L 0.83 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-ZF-A9R4-01 15 25448221 25448221 G A SNORD115-20 5'Flank 0.81 TCGA-ZF-A9R4-01 15 32460267 32460267 G A CHRNA7 Missense_Mutation p.A402T 0.32 tolerated(0.6) benign(0.004) TCGA-ZF-A9R4-01 15 48056217 48056217 C A SEMA6D Silent p.I306I 0.85 TCGA-ZF-A9R4-01 15 72579582 72579582 C T CELF6 3'UTR 0.78 TCGA-ZF-A9R4-01 15 78572689 78572689 C G DNAJA4 Missense_Mutation p.Q390E 0.92 tolerated(1) benign(0.005) TCGA-ZF-A9R4-01 15 88678458 88678458 C T NTRK3 Missense_Mutation p.E360K 0.85 deleterious(0.01) possibly_damaging(0.75) TCGA-ZF-A9R4-01 16 10788751 10788751 C T TEKT5 5'UTR 0.33 TCGA-ZF-A9R4-01 16 20352637 20352637 G A UMOD Silent p.G451G 0.29 TCGA-ZF-A9R4-01 16 20871597 20871597 C A DCUN1D3 Nonsense_Mutation p.E176* 0.38 TCGA-ZF-A9R4-01 16 30002179 30002179 C T TAOK2 3'Flank 0.30 TCGA-ZF-A9R4-01 16 4039033 4039033 C T ADCY9 Missense_Mutation p.E758K 0.67 tolerated(0.38) benign(0.04) TCGA-ZF-A9R4-01 16 4871444 4871444 G A GLYR1 Missense_Mutation p.S248F 0.32 deleterious(0) benign(0.092) TCGA-ZF-A9R4-01 16 57931375 57931375 G T CNGB1 Silent p.I1056I 0.43 TCGA-ZF-A9R4-01 16 67685873 67685873 C T RLTPR Nonsense_Mutation p.Q880* 0.33 TCGA-ZF-A9R4-01 16 71512902 71512902 C T ZNF19 Missense_Mutation p.V14M 0.45 deleterious(0.03) possibly_damaging(0.472) TCGA-ZF-A9R4-01 16 72832607 72832607 G C ZFHX3 Nonsense_Mutation p.S1325* 0.65 TCGA-ZF-A9R4-01 16 90099231 90099231 C T GAS8 Missense_Mutation p.R132C 0.38 tolerated(0.19) benign(0.005) TCGA-ZF-A9R4-01 17 10397696 10397696 G A MYH1 Missense_Mutation p.S1881F 0.51 deleterious(0) benign(0.166) TCGA-ZF-A9R4-01 17 15965161 15965161 G A NCOR1 Missense_Mutation p.S1812F 0.49 possibly_damaging(0.583) TCGA-ZF-A9R4-01 17 18565581 18565581 C A ZNF286B Missense_Mutation p.C413F 0.35 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 17 28545313 28545313 G A SLC6A4 Missense_Mutation p.S174F 0.36 tolerated(1) benign(0.006) TCGA-ZF-A9R4-01 17 29161548 29161548 A C ATAD5 Missense_Mutation p.D150A 0.20 deleterious(0.04) benign(0.004) TCGA-ZF-A9R4-01 17 2965997 2965997 C T OR1D5 Missense_Mutation p.R302K 0.41 tolerated(0.83) benign(0.001) TCGA-ZF-A9R4-01 17 40328187 40328187 G C KCNH4 Missense_Mutation p.F238L 0.41 tolerated(0.16) benign(0.003) TCGA-ZF-A9R4-01 17 43227358 43227358 C T HEXIM1 Silent p.F267F 0.60 TCGA-ZF-A9R4-01 17 43227739 43227739 C G HEXIM1 3'UTR 0.46 TCGA-ZF-A9R4-01 17 43580838 43580838 C T LRRC37A4P 3'Flank 0.40 TCGA-ZF-A9R4-01 17 47246260 47246260 C T B4GALNT2 Missense_Mutation p.S498L 0.29 tolerated(0.4) benign(0.008) TCGA-ZF-A9R4-01 17 48631805 48631805 C T SPATA20 Silent p.L717L 0.38 TCGA-ZF-A9R4-01 17 55335715 55335715 G A MSI2 Silent p.T90T 0.24 TCGA-ZF-A9R4-01 17 61897259 61897259 C G FTSJ3 Missense_Mutation p.G816A 0.53 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R4-01 17 62290103 62290103 G C TEX2 Missense_Mutation p.P492R 0.40 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R4-01 17 62290424 62290424 G A TEX2 Missense_Mutation p.S385F 0.50 tolerated(0.13) possibly_damaging(0.575) TCGA-ZF-A9R4-01 17 66033579 66033579 A G KPNA2 Missense_Mutation p.T61A 0.52 tolerated(0.47) benign(0.042) TCGA-ZF-A9R4-01 17 66040130 66040130 G C KPNA2 Missense_Mutation p.Q369H 0.46 tolerated(0.17) probably_damaging(0.983) TCGA-ZF-A9R4-01 17 67023473 67023473 G A ABCA9 Nonsense_Mutation p.Q637* 0.48 TCGA-ZF-A9R4-01 17 7399872 7399872 G A POLR2A Silent p.E159E 0.47 TCGA-ZF-A9R4-01 17 74157697 74157697 C T RNF157 Missense_Mutation p.M328I 0.38 tolerated(0.05) benign(0.009) TCGA-ZF-A9R4-01 17 74287932 74287932 C T QRICH2 Missense_Mutation p.R793H 0.42 tolerated(0.31) benign(0.006) TCGA-ZF-A9R4-01 17 75484920 75484920 C G SEPT9 Silent p.L412L 0.36 TCGA-ZF-A9R4-01 17 7578513 7578513 C G TP53 Missense_Mutation p.K139N 0.82 deleterious(0.02) possibly_damaging(0.832) TCGA-ZF-A9R4-01 17 79880793 79880793 G C MAFG Silent p.L59L 0.24 TCGA-ZF-A9R4-01 18 44260143 44260143 G C ST8SIA5 Silent p.L331L 0.37 TCGA-ZF-A9R4-01 18 47363894 47363894 G T MYO5B Missense_Mutation p.Q1711K 0.35 deleterious(0) possibly_damaging(0.803) TCGA-ZF-A9R4-01 18 57000376 57000376 C G LMAN1 Missense_Mutation p.E441Q 0.55 deleterious(0.01) probably_damaging(0.96) TCGA-ZF-A9R4-01 18 61582754 61582754 C G SERPINB10 Missense_Mutation p.L4V 0.60 tolerated(0.19) benign(0.194) TCGA-ZF-A9R4-01 18 70532050 70532050 G A NETO1 Silent p.I71I 0.30 TCGA-ZF-A9R4-01 18 72998746 72998746 G A TSHZ1 Missense_Mutation p.E417K 0.30 tolerated(0.28) probably_damaging(0.949) TCGA-ZF-A9R4-01 19 13211529 13211529 G A LYL1 Silent p.I123I 0.24 TCGA-ZF-A9R4-01 19 14024046 14024046 G C CC2D1A Missense_Mutation p.Q148H 0.50 deleterious(0.02) possibly_damaging(0.498) TCGA-ZF-A9R4-01 19 1434778 1434778 C G DAZAP1 Nonsense_Mutation p.S364* 0.86 TCGA-ZF-A9R4-01 19 15582716 15582716 C T PGLYRP2 Missense_Mutation p.G443E 0.23 tolerated(0.08) benign(0.001) TCGA-ZF-A9R4-01 19 17436077 17436077 C T ANO8 Missense_Mutation p.R927Q 0.55 deleterious(0.01) unknown(0) TCGA-ZF-A9R4-01 19 18502902 18502902 G A LRRC25 Silent p.I271I 0.21 TCGA-ZF-A9R4-01 19 19654143 19654143 G A CILP2 Missense_Mutation p.G355D 0.59 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 19 20808126 20808126 G A ZNF626 Missense_Mutation p.S186L 0.60 tolerated(0.2) probably_damaging(0.977) TCGA-ZF-A9R4-01 19 33878326 33878326 G A PEPD Missense_Mutation p.P469L 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 19 37733679 37733679 C T ZNF383 Nonsense_Mutation p.Q181* 0.51 TCGA-ZF-A9R4-01 19 38794891 38794891 C G C19orf33 5'UTR 0.42 TCGA-ZF-A9R4-01 19 38800062 38800062 C T YIF1B Missense_Mutation p.E94K 0.23 deleterious(0.02) benign(0.285) TCGA-ZF-A9R4-01 19 4501209 4501209 C G HDGFRP2 Nonsense_Mutation p.S604* 0.66 TCGA-ZF-A9R4-01 19 4510759 4510759 C A PLIN4 Missense_Mutation p.R1057S 0.56 tolerated(0.83) benign(0.01) TCGA-ZF-A9R4-01 19 4510957 4510957 C T PLIN4 Missense_Mutation p.M991I 0.53 tolerated(0.28) benign(0.011) TCGA-ZF-A9R4-01 19 4512046 4512046 C T PLIN4 Silent p.V628V 0.51 TCGA-ZF-A9R4-01 19 4523457 4523457 C G PLIN5 3'UTR 0.80 TCGA-ZF-A9R4-01 19 45395666 45395666 G A TOMM40 Silent p.Q97Q 0.40 TCGA-ZF-A9R4-01 19 52327547 52327547 C G FPR3 Missense_Mutation p.F182L 0.54 tolerated(0.64) benign(0.017) TCGA-ZF-A9R4-01 19 55019131 55019131 G A LAIR2 Silent p.S32S 0.51 TCGA-ZF-A9R4-01 19 55087518 55087518 C G LILRA2 Silent p.L399L 0.42 TCGA-ZF-A9R4-01 19 9453877 9453877 T C ZNF559 3'UTR 0.77 TCGA-ZF-A9R4-01 1 103343554 103343554 G C COL11A1 3'UTR 0.40 TCGA-ZF-A9R4-01 1 103488462 103488462 C T COL11A1 Missense_Mutation p.E361K 0.40 possibly_damaging(0.833) TCGA-ZF-A9R4-01 1 11187752 11187752 C G MTOR Missense_Mutation p.E2049Q 0.51 tolerated(0.34) benign(0.039) TCGA-ZF-A9R4-01 1 11187854 11187854 C G MTOR Missense_Mutation p.E2015Q 0.47 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R4-01 1 117158893 117158893 G C IGSF3 Missense_Mutation p.S77C 0.44 deleterious(0) possibly_damaging(0.838) TCGA-ZF-A9R4-01 1 148004675 148004675 C T NBPF14 Missense_Mutation p.R886K 0.12 tolerated(0.22) benign(0.391) TCGA-ZF-A9R4-01 1 149858692 149858692 C G HIST2H2AC Silent p.L56L 0.42 TCGA-ZF-A9R4-01 1 152648908 152648908 C G LCE2C 3'UTR 0.11 TCGA-ZF-A9R4-01 1 153719781 153719781 G A INTS3 Silent p.V153V 0.74 TCGA-ZF-A9R4-01 1 154574831 154574831 C T ADAR Missense_Mutation p.G96D 0.77 tolerated(0.11) benign(0.005) TCGA-ZF-A9R4-01 1 160057420 160057420 C T KCNJ9 Missense_Mutation p.S332L 0.18 tolerated(0.42) benign(0.391) TCGA-ZF-A9R4-01 1 168260524 168260524 C T TBX19 Silent p.P110P 0.25 TCGA-ZF-A9R4-01 1 179985015 179985015 C G CEP350 Missense_Mutation p.S695C 0.45 probably_damaging(0.999) TCGA-ZF-A9R4-01 1 196682931 196682931 C A CFH Missense_Mutation p.A468D 0.29 tolerated(0.23) benign(0.011) TCGA-ZF-A9R4-01 1 200817643 200817643 C G CAMSAP2 Missense_Mutation p.I582M 0.21 tolerated(0.22) benign(0.188) TCGA-ZF-A9R4-01 1 201750418 201750418 G C NAV1 Missense_Mutation p.Q548H 0.33 deleterious(0.04) probably_damaging(0.976) TCGA-ZF-A9R4-01 1 201981563 201981565 TGG - ELF3 Splice_Site p.X160_splice 0.55 TCGA-ZF-A9R4-01 1 227838690 227838690 A G ZNF678 5'UTR 0.67 TCGA-ZF-A9R4-01 1 249211438 249211438 G C PGBD2 Missense_Mutation p.D219H 0.17 deleterious(0) probably_damaging(0.961) TCGA-ZF-A9R4-01 1 26301079 26301079 C T PAFAH2 Missense_Mutation p.R274Q 0.32 tolerated(0.73) benign(0.017) TCGA-ZF-A9R4-01 1 27267978 27267978 C T NUDC Nonsense_Mutation p.Q64* 0.33 TCGA-ZF-A9R4-01 1 29609408 29609408 G C PTPRU Missense_Mutation p.E697Q 0.39 tolerated(0.57) possibly_damaging(0.597) TCGA-ZF-A9R4-01 1 35862221 35862221 C G ZMYM4 Missense_Mutation p.L994V 0.46 deleterious(0.01) benign(0.15) TCGA-ZF-A9R4-01 1 36307064 36307064 G C AGO4 Missense_Mutation p.E675Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 1 40872484 40872484 G A SMAP2 Silent p.V60V 0.79 TCGA-ZF-A9R4-01 1 43855570 43855570 G A SZT2 5'Flank 0.19 TCGA-ZF-A9R4-01 1 47075816 47075816 C T MOB3C Missense_Mutation p.R212Q 0.66 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 1 5934639 5934639 G A NPHP4 Silent p.F1041F 0.44 TCGA-ZF-A9R4-01 1 62579821 62579821 G T INADL Nonsense_Mutation p.E1520* 0.38 TCGA-ZF-A9R4-01 1 8384632 8384632 G C SLC45A1 Missense_Mutation p.Q81H 0.25 deleterious(0.01) benign(0.041) TCGA-ZF-A9R4-01 1 94652079 94652079 C G ARHGAP29 Missense_Mutation p.E586Q 0.45 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R4-01 20 13740459 13740459 T C ESF1 Missense_Mutation p.K570E 0.43 tolerated(0.24) probably_damaging(0.985) TCGA-ZF-A9R4-01 20 17716467 17716467 C T BANF2 3'UTR 0.48 TCGA-ZF-A9R4-01 20 2639120 2639120 C T IDH3B 3'UTR 0.48 TCGA-ZF-A9R4-01 20 49195795 49195795 G A PTPN1 Missense_Mutation p.D265N 0.40 deleterious(0) possibly_damaging(0.798) TCGA-ZF-A9R4-01 20 49196427 49196427 G A PTPN1 Missense_Mutation p.G351E 0.35 tolerated(0.39) benign(0.013) TCGA-ZF-A9R4-01 20 62577866 62577866 C T UCKL1 Missense_Mutation p.A82T 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9R4-01 21 37833330 37833330 C T CLDN14 Missense_Mutation p.A222T 0.48 tolerated(0.4) benign(0.031) TCGA-ZF-A9R4-01 21 45655395 45655395 C T ICOSLG Missense_Mutation p.E153K 0.38 deleterious(0.02) benign(0.199) TCGA-ZF-A9R4-01 21 45799047 45799047 C T TRPM2 Silent p.F394F 0.37 TCGA-ZF-A9R4-01 21 45947229 45947229 C T TSPEAR Silent p.Q365Q 0.45 TCGA-ZF-A9R4-01 21 47666262 47666262 C T MCM3AP Missense_Mutation p.E1536K 0.47 tolerated(0.22) probably_damaging(0.986) TCGA-ZF-A9R4-01 21 47666548 47666548 C G MCM3AP Missense_Mutation p.E1515Q 0.47 deleterious(0) possibly_damaging(0.782) TCGA-ZF-A9R4-01 22 19706126 19706126 C G SEPT5 Intron 0.33 TCGA-ZF-A9R4-01 22 21363368 21363368 C G AC002472.1 5'Flank 0.32 TCGA-ZF-A9R4-01 22 31740795 31740795 C T PATZ1 Missense_Mutation p.R265Q 0.45 deleterious(0.02) possibly_damaging(0.86) TCGA-ZF-A9R4-01 22 38038681 38038681 G A SH3BP1 Intron 0.44 TCGA-ZF-A9R4-01 22 41554442 41554445 TTGC - EP300 Frame_Shift_Del p.C1177Tfs*49 0.50 TCGA-ZF-A9R4-01 22 47062746 47062746 C A GRAMD4 Silent p.I278I 0.43 TCGA-ZF-A9R4-01 22 47116874 47116874 C T CERK Missense_Mutation p.E61K 0.43 tolerated(0.15) benign(0.041) TCGA-ZF-A9R4-01 22 50882308 50882308 G T PPP6R2 Missense_Mutation p.D839Y 0.44 deleterious(0.03) benign(0.059) TCGA-ZF-A9R4-01 2 100017760 100017760 C G REV1 Missense_Mutation p.D1234H 0.26 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 2 10008411 10008411 G A TAF1B Missense_Mutation p.E136K 0.59 tolerated(0.44) benign(0.006) TCGA-ZF-A9R4-01 2 111425132 111425132 C T BUB1 Silent p.Q257Q 0.68 TCGA-ZF-A9R4-01 2 116257166 116257166 G T DPP10 Nonsense_Mutation p.E122* 0.69 TCGA-ZF-A9R4-01 2 11765359 11765360 - A GREB1 Frame_Shift_Ins p.F1410Ifs*2 0.27 TCGA-ZF-A9R4-01 2 128855037 128855037 C T UGGT1 Silent p.L31L 0.58 TCGA-ZF-A9R4-01 2 132021595 132021595 G A POTEE Missense_Mutation p.G856D 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 2 158622616 158622616 G T ACVR1 Missense_Mutation p.L295I 0.50 deleterious(0) possibly_damaging(0.83) TCGA-ZF-A9R4-01 2 160310286 160310286 G A BAZ2B Nonsense_Mutation p.Q58* 0.57 TCGA-ZF-A9R4-01 2 166168552 166168552 G C SCN2A Missense_Mutation p.E330Q 0.34 tolerated(0.07) benign(0.008) TCGA-ZF-A9R4-01 2 168108071 168108071 C G XIRP2 Missense_Mutation p.S3390C 0.60 probably_damaging(0.957) TCGA-ZF-A9R4-01 2 179425197 179425197 G A TTN Silent p.P28554P 0.68 TCGA-ZF-A9R4-01 2 179616692 179616692 C G TTN Intron 0.55 TCGA-ZF-A9R4-01 2 187540556 187540556 C T ITGAV Nonsense_Mutation p.Q944* 0.21 TCGA-ZF-A9R4-01 2 189874904 189874904 G C COL3A1 Missense_Mutation p.G1275A 0.52 unknown(0) TCGA-ZF-A9R4-01 2 197664309 197664309 G T GTF3C3 Silent p.I9I 0.20 TCGA-ZF-A9R4-01 2 198266713 198266713 C T SF3B1 Missense_Mutation p.G740E 0.33 deleterious(0.01) possibly_damaging(0.686) TCGA-ZF-A9R4-01 2 20647310 20647310 C G RHOB Missense_Mutation p.D28E 0.60 tolerated(0.13) benign(0.012) TCGA-ZF-A9R4-01 2 216177102 216177102 C T ATIC Intron 0.56 TCGA-ZF-A9R4-01 2 219249071 219249071 G A SLC11A1 Missense_Mutation p.A86T 0.43 tolerated(0.05) probably_damaging(0.993) TCGA-ZF-A9R4-01 2 220115591 220115591 G C TUBA4A Missense_Mutation p.S277C 0.30 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-ZF-A9R4-01 2 220440120 220440120 C G INHA Missense_Mutation p.Q325E 0.53 deleterious(0.03) benign(0.158) TCGA-ZF-A9R4-01 2 233756125 233756125 G C NGEF Missense_Mutation p.F405L 0.28 tolerated(1) benign(0.024) TCGA-ZF-A9R4-01 2 234581254 234581254 A G UGT1A9 Missense_Mutation p.K225R 0.60 tolerated(0.5) benign(0.032) TCGA-ZF-A9R4-01 2 24896236 24896236 G C NCOA1 Missense_Mutation p.E86D 0.31 tolerated(0.43) possibly_damaging(0.706) TCGA-ZF-A9R4-01 2 24896300 24896300 G A NCOA1 Missense_Mutation p.E108K 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-ZF-A9R4-01 2 27886542 27886542 G C SLC4A1AP 5'UTR 0.25 TCGA-ZF-A9R4-01 2 31591409 31591409 C T XDH Missense_Mutation p.E700K 0.37 tolerated(0.07) benign(0.014) TCGA-ZF-A9R4-01 2 38978402 38978402 G A SRSF7 5'UTR 0.65 TCGA-ZF-A9R4-01 2 61258581 61258581 G C PEX13 Missense_Mutation p.M40I 0.55 tolerated(0.23) benign(0) TCGA-ZF-A9R4-01 2 90044393 90044393 C A IGKV2D-24 Missense_Mutation p.A105D 0.62 deleterious(0.02) benign(0.071) TCGA-ZF-A9R4-01 2 95954741 95954741 G C PROM2 Silent p.L834L 0.63 TCGA-ZF-A9R4-01 3 11067216 11067216 G A SLC6A1 Missense_Mutation p.E266K 0.44 tolerated(0.1) possibly_damaging(0.555) TCGA-ZF-A9R4-01 3 113775288 113775288 G A KIAA1407 Missense_Mutation p.S9F 0.60 deleterious(0.01) benign(0.036) TCGA-ZF-A9R4-01 3 12613565 12613565 C G MKRN2 Intron 0.45 TCGA-ZF-A9R4-01 3 136078066 136078066 C G STAG1 Missense_Mutation p.E954Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 3 136078117 136078117 C G STAG1 Missense_Mutation p.E937Q 0.43 tolerated(0.1) possibly_damaging(0.501) TCGA-ZF-A9R4-01 3 151475212 151475212 G A AADACL2 Missense_Mutation p.D346N 0.64 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R4-01 3 169802467 169802467 C A GPR160 Missense_Mutation p.S236Y 0.61 tolerated(0.66) benign(0.014) TCGA-ZF-A9R4-01 3 184064408 184064408 C T CLCN2 Missense_Mutation p.D895N 0.23 deleterious(0.04) benign(0.041) TCGA-ZF-A9R4-01 3 186572145 186572145 C T ADIPOQ Silent p.P129P 0.16 TCGA-ZF-A9R4-01 3 24018896 24018896 A C NR1D2 Missense_Mutation p.K576Q 0.52 deleterious(0.04) probably_damaging(0.959) TCGA-ZF-A9R4-01 3 45785138 45785138 G T SACM1L Missense_Mutation p.V581F 0.68 tolerated(0.08) benign(0.032) TCGA-ZF-A9R4-01 3 48716072 48716072 G T NCKIPSD Silent p.I630I 0.58 TCGA-ZF-A9R4-01 3 51426544 51426544 G A MANF 3'UTR 0.32 TCGA-ZF-A9R4-01 3 52109918 52109918 C T POC1A Silent p.Q403Q 0.63 TCGA-ZF-A9R4-01 3 53269121 53269121 G A TKT Silent p.F177F 0.72 TCGA-ZF-A9R4-01 3 57232304 57232304 C T HESX1 Missense_Mutation p.R160H 0.15 deleterious(0.01) probably_damaging(0.919) TCGA-ZF-A9R4-01 3 64599121 64599121 C G ADAMTS9 Missense_Mutation p.R1085P 0.16 tolerated(0.1) possibly_damaging(0.889) TCGA-ZF-A9R4-01 3 9514978 9514978 G A SETD5 Missense_Mutation p.G1085E 0.38 tolerated(0.54) benign(0.08) TCGA-ZF-A9R4-01 4 100867639 100867639 G A DNAJB14 Silent p.F30F 0.88 TCGA-ZF-A9R4-01 4 103827759 103827759 G A SLC9B1 Nonsense_Mutation p.Q377* 0.72 TCGA-ZF-A9R4-01 4 142153687 142153687 C T ZNF330 Silent p.F193F 0.95 TCGA-ZF-A9R4-01 4 149181140 149181140 T C NR3C2 Silent p.R629R 0.10 TCGA-ZF-A9R4-01 4 155529686 155529686 C G FGG Missense_Mutation p.L261F 0.74 deleterious(0.03) probably_damaging(1) TCGA-ZF-A9R4-01 4 170618377 170618377 C A CLCN3 Nonsense_Mutation p.S352* 0.85 TCGA-ZF-A9R4-01 4 23816119 23816119 C G PPARGC1A Missense_Mutation p.K329N 0.53 tolerated(0.08) possibly_damaging(0.848) TCGA-ZF-A9R4-01 4 40440341 40440341 C G RBM47 Missense_Mutation p.K190N 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9R4-01 4 47887618 47887618 G C NFXL1 Missense_Mutation p.S574C 0.22 tolerated(0.06) benign(0.246) TCGA-ZF-A9R4-01 4 7873676 7873676 C G AFAP1 Intron 0.32 TCGA-ZF-A9R4-01 4 79207580 79207580 C T FRAS1 Missense_Mutation p.T474M 0.64 benign(0.085) TCGA-ZF-A9R4-01 4 89859343 89859343 T C FAM13A Missense_Mutation p.I219V 0.83 tolerated(0.1) benign(0.358) TCGA-ZF-A9R4-01 5 137498964 137498964 C T BRD8 Missense_Mutation p.E648K 0.38 tolerated(0.08) probably_damaging(0.965) TCGA-ZF-A9R4-01 5 13901514 13901514 G A DNAH5 Silent p.L633L 0.51 TCGA-ZF-A9R4-01 5 139494679 139494679 G T PURA Nonsense_Mutation p.E305* 0.26 TCGA-ZF-A9R4-01 5 140183224 140183224 C A PCDHA3 Intron 0.22 TCGA-ZF-A9R4-01 5 140563928 140563928 G C PCDHB16 Missense_Mutation p.Q598H 0.68 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-ZF-A9R4-01 5 140590502 140590502 G T PCDHB12 Nonsense_Mutation p.E675* 0.61 TCGA-ZF-A9R4-01 5 140718832 140718832 G A PCDHGA2 Silent p.Q98Q 0.19 TCGA-ZF-A9R4-01 5 141016334 141016334 G C HDAC3 Missense_Mutation p.F8L 0.63 deleterious(0.02) benign(0.14) TCGA-ZF-A9R4-01 5 141524185 141524185 G C NDFIP1 Missense_Mutation p.K204N 0.29 tolerated(0.97) benign(0.133) TCGA-ZF-A9R4-01 5 142500673 142500673 G A ARHGAP26 Silent p.Q553Q 0.28 TCGA-ZF-A9R4-01 5 153054212 153054212 G C GRIA1 Missense_Mutation p.K294N 0.26 tolerated(0.3) benign(0.197) TCGA-ZF-A9R4-01 5 169679455 169679455 G C LCP2 Missense_Mutation p.L436V 0.67 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 5 171789745 171789745 C T SH3PXD2B Missense_Mutation p.E186K 0.33 deleterious(0) probably_damaging(0.957) TCGA-ZF-A9R4-01 5 177548745 177548745 G A N4BP3 Missense_Mutation p.E460K 0.93 tolerated(0.92) possibly_damaging(0.52) TCGA-ZF-A9R4-01 5 35793429 35793429 G C SPEF2 Missense_Mutation p.E1575Q 0.41 deleterious(0.02) benign(0.322) TCGA-ZF-A9R4-01 5 77590302 77590302 G C AP3B1 Missense_Mutation p.F34L 0.82 tolerated(0.29) benign(0.085) TCGA-ZF-A9R4-01 5 9202183 9202183 C T SEMA5A Missense_Mutation p.M272I 0.45 deleterious(0.01) benign(0.11) TCGA-ZF-A9R4-01 6 108645138 108645138 C G LACE1 Missense_Mutation p.I83M 0.46 deleterious(0) possibly_damaging(0.908) TCGA-ZF-A9R4-01 6 116949065 116949065 C G RSPH4A Missense_Mutation p.H399D 0.48 tolerated(1) benign(0) TCGA-ZF-A9R4-01 6 152690261 152690261 G C SYNE1 Missense_Mutation p.S3218C 0.43 probably_damaging(1) TCGA-ZF-A9R4-01 6 152749478 152749478 G A SYNE1 Missense_Mutation p.S1613L 0.41 benign(0.003) TCGA-ZF-A9R4-01 6 157150430 157150430 C T ARID1B Nonsense_Mutation p.Q538* 0.42 TCGA-ZF-A9R4-01 6 165806202 165806202 G A PDE10A Missense_Mutation p.A530V 0.05 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9R4-01 6 32905010 32905010 C T HLA-DMB Silent p.G187G 0.57 TCGA-ZF-A9R4-01 6 35199542 35199542 G C SCUBE3 Missense_Mutation p.Q125H 0.36 tolerated(1) benign(0.05) TCGA-ZF-A9R4-01 6 4041080 4041080 G C PRPF4B Missense_Mutation p.R496T 0.53 deleterious(0.01) benign(0.227) TCGA-ZF-A9R4-01 6 74191937 74191937 G A MTO1 Missense_Mutation p.D519N 0.51 deleterious(0) probably_damaging(0.959) TCGA-ZF-A9R4-01 6 74191946 74191946 G A MTO1 Missense_Mutation p.D522N 0.51 deleterious(0) probably_damaging(0.944) TCGA-ZF-A9R4-01 6 90045138 90045138 G C UBE2J1 Missense_Mutation p.F147L 0.46 deleterious(0.03) benign(0.099) TCGA-ZF-A9R4-01 6 97246651 97246651 G C GPR63 Silent p.L319L 0.50 TCGA-ZF-A9R4-01 7 100776988 100776988 C T SERPINE1 Missense_Mutation p.T238M 0.17 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R4-01 7 103130252 103130252 G C RELN Missense_Mutation p.L3234V 0.59 deleterious(0.02) benign(0.141) TCGA-ZF-A9R4-01 7 1166985 1166985 C G C7orf50 Missense_Mutation p.E13Q 0.53 deleterious_low_confidence(0.02) benign(0.059) TCGA-ZF-A9R4-01 7 148489832 148489832 G C CUL1 Missense_Mutation p.Q607H 0.33 deleterious(0) probably_damaging(0.945) TCGA-ZF-A9R4-01 7 150732784 150732784 G A ABCB8 Silent p.L294L 0.53 TCGA-ZF-A9R4-01 7 150742322 150742322 G C ABCB8 Missense_Mutation p.K681N 0.27 tolerated(0.08) benign(0.055) TCGA-ZF-A9R4-01 7 50467644 50467644 C T IKZF1 Silent p.Y251Y 0.33 TCGA-ZF-A9R4-01 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.60 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ZF-A9R4-01 7 64291896 64291896 G A ZNF138 Silent p.V66V 0.31 TCGA-ZF-A9R4-01 7 64292137 64292137 G A ZNF138 Missense_Mutation p.D147N 0.27 deleterious(0.02) benign(0.147) TCGA-ZF-A9R4-01 7 64293009 64293009 G A ZNF138 3'Flank 0.33 TCGA-ZF-A9R4-01 7 74536717 74536717 G A GTF2IRD2B Silent p.V88V 0.35 TCGA-ZF-A9R4-01 7 75203084 75203084 G T HIP1 Missense_Mutation p.L243I 0.68 deleterious(0.01) probably_damaging(0.979) TCGA-ZF-A9R4-01 7 99507267 99507267 G C TRIM4 Missense_Mutation p.S163C 0.31 tolerated(0.07) possibly_damaging(0.628) TCGA-ZF-A9R4-01 7 99809157 99809157 G A STAG3 Silent p.L1170L 0.63 TCGA-ZF-A9R4-01 8 100160158 100160158 C G VPS13B Missense_Mutation p.L645V 0.44 tolerated(0.14) benign(0.245) TCGA-ZF-A9R4-01 8 19297442 19297442 C T CSGALNACT1 Silent p.R284R 0.97 TCGA-ZF-A9R4-01 8 33230132 33230132 G A FUT10 Missense_Mutation p.S468L 0.91 deleterious(0.01) benign(0.206) TCGA-ZF-A9R4-01 8 59404917 59404917 G A CYP7A1 Missense_Mutation p.P404S 0.47 deleterious(0) probably_damaging(1) TCGA-ZF-A9R4-01 9 111947821 111947821 A G EPB41L4B Missense_Mutation p.M789T 0.13 deleterious_low_confidence(0) benign(0.073) TCGA-ZF-A9R4-01 9 113166794 113166794 G T SVEP1 Missense_Mutation p.T3160K 0.36 possibly_damaging(0.811) TCGA-ZF-A9R4-01 9 114202739 114202739 G A KIAA0368 Missense_Mutation p.S329L 0.48 tolerated(0.27) benign(0.002) TCGA-ZF-A9R4-01 9 131469274 131469274 G A PKN3 Missense_Mutation p.R208K 0.44 tolerated(1) benign(0.075) TCGA-ZF-A9R4-01 9 131671124 131671124 G A LRRC8A Missense_Mutation p.V561M 0.31 tolerated(0.15) probably_damaging(0.944) TCGA-ZF-A9R4-01 9 135153501 135153501 G A SETX Silent p.L2266L 0.34 TCGA-ZF-A9R4-01 9 135153600 135153600 G A SETX Silent p.F2233F 0.29 TCGA-ZF-A9R4-01 9 135771509 135771509 C G TSC1 3'UTR 0.40 TCGA-ZF-A9R4-01 9 138438707 138438707 G A OBP2A Silent p.V52V 0.49 TCGA-ZF-A9R4-01 9 139617888 139617888 G T FAM69B Missense_Mutation p.A320S 0.58 tolerated(0.11) probably_damaging(0.926) TCGA-ZF-A9R4-01 9 140099698 140099698 C A TMEM203 Missense_Mutation p.D57Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R4-01 9 140329478 140329478 T A ENTPD8 Missense_Mutation p.Q459L 0.42 tolerated(0.67) benign(0.006) TCGA-ZF-A9R4-01 9 140652431 140652431 G A EHMT1 Missense_Mutation p.R490Q 0.58 tolerated(0.14) benign(0.3) TCGA-ZF-A9R4-01 9 21971036 21971036 C T CDKN2A Missense_Mutation p.D108N 0.37 deleterious(0.03) probably_damaging(0.96) TCGA-ZF-A9R4-01 9 21971114 21971114 C T CDKN2A Missense_Mutation p.V82M 0.50 deleterious(0) probably_damaging(0.966) TCGA-ZF-A9R4-01 9 21974687 21974708 CTCCGACCGTAACTATTCGGTG GAC CDKN2A Frame_Shift_Del p.A40Gfs*7 0.28 TCGA-ZF-A9R4-01 9 36170889 36170889 G C CCIN Missense_Mutation p.E464Q 0.37 tolerated(0.29) benign(0.01) TCGA-ZF-A9R4-01 9 37441255 37441255 G T ZBTB5 Missense_Mutation p.P432T 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ZF-A9R4-01 X 135427062 135427062 G C GPR112 Missense_Mutation p.K399N 0.86 deleterious(0.02) probably_damaging(0.996) TCGA-ZF-A9R4-01 X 13764961 13764961 A T OFD1 Missense_Mutation p.E239D 0.15 deleterious(0.04) benign(0.188) TCGA-ZF-A9R4-01 X 17750302 17750302 G A NHS Silent p.Q1537Q 0.91 TCGA-ZF-A9R4-01 X 71843001 71843001 C A PHKA1 Nonsense_Mutation p.E640* 0.91 TCGA-ZF-A9R5-01 10 103577779 103577779 T C MGEA5 Translation_Start_Site p.M1? 0.58 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-ZF-A9R5-01 10 28233216 28233216 C A ARMC4 Missense_Mutation p.A560S 0.49 tolerated(0.11) probably_damaging(0.996) TCGA-ZF-A9R5-01 10 69959314 69959314 C G MYPN Missense_Mutation p.L1159V 0.46 deleterious(0) probably_damaging(0.978) TCGA-ZF-A9R5-01 11 56128490 56128490 A G OR8J1 Silent p.L256L 0.55 TCGA-ZF-A9R5-01 11 85416068 85416068 T C SYTL2 Missense_Mutation p.K1041E 0.48 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R5-01 12 109617746 109617746 G A ACACB Missense_Mutation p.V558M 0.32 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9R5-01 12 118016970 118016970 C T KSR2 Missense_Mutation p.V427I 0.60 deleterious(0.01) probably_damaging(0.952) TCGA-ZF-A9R5-01 12 49441764 49441764 T C KMT2D Missense_Mutation p.Y1407C 0.67 probably_damaging(0.999) TCGA-ZF-A9R5-01 12 49444513 49444525 GGAGACAGGGCCG - KMT2D Frame_Shift_Del p.P949Lfs*5 0.50 TCGA-ZF-A9R5-01 12 52306173 52306173 T G ACVRL1 Intron 0.55 TCGA-ZF-A9R5-01 13 39432153 39432153 C A FREM2 Missense_Mutation p.P2400T 0.48 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R5-01 13 49076887 49076887 C T RCBTB2 Missense_Mutation p.A364T 0.30 tolerated(0.24) possibly_damaging(0.864) TCGA-ZF-A9R5-01 13 52548085 52548085 G A ATP7B Missense_Mutation p.A424V 0.42 tolerated(0.13) benign(0.077) TCGA-ZF-A9R5-01 14 102511020 102511020 C T DYNC1H1 Missense_Mutation p.L4331F 0.40 probably_damaging(0.998) TCGA-ZF-A9R5-01 14 29237849 29237849 C T FOXG1 Missense_Mutation p.S455F 0.51 deleterious_low_confidence(0) benign(0.002) TCGA-ZF-A9R5-01 14 73159898 73159898 G A DPF3 Nonsense_Mutation p.R210* 0.52 TCGA-ZF-A9R5-01 14 94964416 94964416 T A SERPINA12 Missense_Mutation p.M107L 0.42 tolerated(0.44) benign(0.003) TCGA-ZF-A9R5-01 15 24922629 24922629 G T NPAP1 Missense_Mutation p.G539W 0.48 deleterious(0.02) possibly_damaging(0.468) TCGA-ZF-A9R5-01 15 43724489 43724489 T C TP53BP1 Missense_Mutation p.N1193S 0.57 tolerated(0.22) benign(0.008) TCGA-ZF-A9R5-01 15 53957875 53957875 A T WDR72 Missense_Mutation p.I619N 0.48 tolerated(0.05) benign(0.049) TCGA-ZF-A9R5-01 15 79059349 79059349 G T ADAMTS7 Silent p.L968L 0.38 TCGA-ZF-A9R5-01 16 19627503 19627503 C T C16orf62 Missense_Mutation p.T453M 0.43 deleterious(0) probably_damaging(0.966) TCGA-ZF-A9R5-01 16 20043132 20043132 C T GPR139 Silent p.P329P 0.42 TCGA-ZF-A9R5-01 16 28157484 28157484 G A XPO6 Missense_Mutation p.T422M 0.45 tolerated(0.14) benign(0.009) TCGA-ZF-A9R5-01 16 3795301 3795301 G A CREBBP Silent p.H1297H 0.29 TCGA-ZF-A9R5-01 16 68397394 68397397 CTTA - SMPD3 Splice_Site p.X570_splice 0.37 TCGA-ZF-A9R5-01 16 69334794 69334794 G A SNTB2 Silent p.S530S 0.41 TCGA-ZF-A9R5-01 16 82131719 82131719 A G HSD17B2 Missense_Mutation p.K281R 0.55 deleterious(0.04) benign(0.059) TCGA-ZF-A9R5-01 17 10442539 10442539 C T MYH2 Missense_Mutation p.G467S 0.40 deleterious(0.01) probably_damaging(0.927) TCGA-ZF-A9R5-01 17 44171937 44171937 G A KANSL1 Missense_Mutation p.R474C 0.27 deleterious(0) probably_damaging(1) TCGA-ZF-A9R5-01 17 56572879 56572879 A T MTMR4 Nonsense_Mutation p.L875* 0.44 TCGA-ZF-A9R5-01 17 8647486 8647486 C T CCDC42 Missense_Mutation p.E34K 0.51 deleterious(0.01) benign(0.02) TCGA-ZF-A9R5-01 18 5434031 5434031 G A EPB41L3 Missense_Mutation p.T232I 0.54 deleterious(0) possibly_damaging(0.725) TCGA-ZF-A9R5-01 18 56824859 56824859 A G SEC11C Missense_Mutation p.M163V 0.44 tolerated(0.19) benign(0.094) TCGA-ZF-A9R5-01 19 11132430 11132430 A T SMARCA4 Missense_Mutation p.E882D 0.20 possibly_damaging(0.897) TCGA-ZF-A9R5-01 19 16338361 16338361 G A AP1M1 Missense_Mutation p.G238S 0.44 tolerated(0.67) benign(0.037) TCGA-ZF-A9R5-01 19 16513112 16513112 T C EPS15L1 Intron 0.57 TCGA-ZF-A9R5-01 19 16687848 16687849 - A MED26 Frame_Shift_Ins p.P265Sfs*17 0.57 TCGA-ZF-A9R5-01 19 48919274 48919274 G T GRIN2D Missense_Mutation p.A533S 0.56 deleterious(0.01) probably_damaging(0.982) TCGA-ZF-A9R5-01 19 50962451 50962451 C T MYBPC2 Silent p.F893F 0.59 TCGA-ZF-A9R5-01 19 52468317 52468317 T A ZNF350 Missense_Mutation p.Q463H 0.52 tolerated(0.08) benign(0.007) TCGA-ZF-A9R5-01 19 8619448 8619448 T C MYO1F Missense_Mutation p.Y80C 0.30 deleterious(0) probably_damaging(0.976) TCGA-ZF-A9R5-01 19 9071452 9071452 T - MUC16 Frame_Shift_Del p.T5332Pfs*7 0.36 TCGA-ZF-A9R5-01 1 103400064 103400064 G T COL11A1 Missense_Mutation p.Q1181K 0.31 unknown(0) TCGA-ZF-A9R5-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.48 deleterious(0.01) benign(0.045) TCGA-ZF-A9R5-01 1 153652175 153652175 C T NPR1 Silent p.F197F 0.20 TCGA-ZF-A9R5-01 1 158736124 158736124 C G OR6N1 Missense_Mutation p.A117P 0.48 deleterious(0.01) probably_damaging(0.912) TCGA-ZF-A9R5-01 1 179462008 179462008 A G AXDND1 Silent p.V770V 0.34 TCGA-ZF-A9R5-01 1 186007165 186007165 C T HMCN1 Missense_Mutation p.P1950L 0.32 probably_damaging(0.999) TCGA-ZF-A9R5-01 1 20005553 20005553 C T HTR6 Missense_Mutation p.R339C 0.47 deleterious(0.04) benign(0.01) TCGA-ZF-A9R5-01 1 216498898 216498898 C T USH2A Missense_Mutation p.A298T 0.43 benign(0.002) TCGA-ZF-A9R5-01 20 25277132 25277132 C T PYGB Missense_Mutation p.P836S 0.40 deleterious(0.03) benign(0.002) TCGA-ZF-A9R5-01 20 31022288 31022288 C A ASXL1 Nonsense_Mutation p.Y591* 0.46 TCGA-ZF-A9R5-01 20 42788428 42788428 G A JPH2 Silent p.D333D 0.45 TCGA-ZF-A9R5-01 20 860412 860412 C T ANGPT4 Missense_Mutation p.R344Q 0.27 deleterious(0.04) possibly_damaging(0.74) TCGA-ZF-A9R5-01 21 11047526 11047526 A T BAGE2 RNA 0.08 TCGA-ZF-A9R5-01 21 31852497 31852497 C A KRTAP19-1 Missense_Mutation p.G47V 0.44 tolerated_low_confidence(0.21) unknown(0) TCGA-ZF-A9R5-01 21 31852498 31852498 C A KRTAP19-1 Missense_Mutation p.G47C 0.44 tolerated_low_confidence(0.11) unknown(0) TCGA-ZF-A9R5-01 21 38884699 38884700 - T DYRK1A Frame_Shift_Ins p.Y720Lfs*6 0.31 TCGA-ZF-A9R5-01 22 22556334 22556334 G A IGLV11-55 Missense_Mutation p.G50S 0.54 tolerated(0.19) benign(0.362) TCGA-ZF-A9R5-01 22 41572350 41572350 C G EP300 Missense_Mutation p.R1627G 0.44 probably_damaging(0.998) TCGA-ZF-A9R5-01 22 42180741 42180741 C T MEI1 Missense_Mutation p.S1100L 0.93 tolerated(0.35) possibly_damaging(0.561) TCGA-ZF-A9R5-01 22 46239596 46239596 G A ATXN10 3'UTR 0.58 TCGA-ZF-A9R5-01 2 179547542 179547542 A G TTN Silent p.Y10992Y 0.37 TCGA-ZF-A9R5-01 2 196737065 196737065 C T DNAH7 Missense_Mutation p.R2181H 0.45 deleterious(0) probably_damaging(1) TCGA-ZF-A9R5-01 2 198498633 198498633 T C RFTN2 Missense_Mutation p.H176R 0.40 tolerated(0.38) benign(0.003) TCGA-ZF-A9R5-01 2 24522981 24522981 G A ITSN2 Nonsense_Mutation p.R381* 0.12 TCGA-ZF-A9R5-01 2 30143332 30143332 C T ALK Missense_Mutation p.R65H 0.36 deleterious_low_confidence(0) possibly_damaging(0.609) TCGA-ZF-A9R5-01 2 80874816 80874816 A G CTNNA2 Missense_Mutation p.Y846C 0.45 deleterious(0.03) possibly_damaging(0.753) TCGA-ZF-A9R5-01 3 10106108 10106108 G A FANCD2 Silent p.P672P 0.35 TCGA-ZF-A9R5-01 3 141006257 141006257 A G ACPL2 Missense_Mutation p.N156S 0.05 tolerated(0.96) benign(0.01) TCGA-ZF-A9R5-01 3 150290078 150290078 G A EIF2A Missense_Mutation p.R382Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9R5-01 3 150931260 150931260 A G P2RY14 Missense_Mutation p.L282P 0.49 deleterious(0) possibly_damaging(0.83) TCGA-ZF-A9R5-01 3 155311744 155311744 C T PLCH1 Silent p.Q140Q 0.58 TCGA-ZF-A9R5-01 3 196281409 196281409 G A WDR53 Silent p.L250L 0.19 TCGA-ZF-A9R5-01 3 27761814 27761814 C A EOMES Missense_Mutation p.R295L 0.41 deleterious(0) probably_damaging(0.964) TCGA-ZF-A9R5-01 3 48616696 48616696 G T COL7A1 Silent p.P1774P 0.37 TCGA-ZF-A9R5-01 3 52391974 52391974 G A DNAH1 Silent p.T1347T 0.53 TCGA-ZF-A9R5-01 3 89259095 89259095 A T EPHA3 Missense_Mutation p.N80I 0.37 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R5-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.45 deleterious(0) possibly_damaging(0.882) TCGA-ZF-A9R5-01 4 187455459 187455459 C T MTNR1A Missense_Mutation p.C146Y 0.44 tolerated(0.16) benign(0.063) TCGA-ZF-A9R5-01 4 2181068 2181068 G T POLN Missense_Mutation p.N382K 0.40 tolerated(0.48) benign(0.028) TCGA-ZF-A9R5-01 4 37590486 37590486 C A C4orf19 5'UTR 0.43 TCGA-ZF-A9R5-01 4 39839541 39839541 T A PDS5A Missense_Mutation p.K1315N 0.10 deleterious_low_confidence(0.01) benign(0.242) TCGA-ZF-A9R5-01 4 46967063 46967063 C T GABRA4 Missense_Mutation p.R353K 0.27 tolerated(0.68) benign(0.003) TCGA-ZF-A9R5-01 4 62758578 62758578 T A LPHN3 Missense_Mutation p.L494H 0.52 tolerated(0.54) benign(0.229) TCGA-ZF-A9R5-01 4 71396948 71396948 G A AMTN Missense_Mutation p.V184M 0.36 tolerated(0.25) benign(0.013) TCGA-ZF-A9R5-01 4 818367 818367 A G CPLX1 5'UTR 0.43 TCGA-ZF-A9R5-01 4 88036057 88036057 C G AFF1 Nonsense_Mutation p.S691* 0.37 TCGA-ZF-A9R5-01 4 95561424 95561425 TA C PDLIM5 Splice_Site p.X399_splice 0.33 TCGA-ZF-A9R5-01 5 139193879 139193879 C T PSD2 Missense_Mutation p.R316W 0.39 deleterious(0) probably_damaging(1) TCGA-ZF-A9R5-01 5 140710644 140710644 C A PCDHGA1 Silent p.P131P 0.40 TCGA-ZF-A9R5-01 5 180057240 180057240 A G FLT4 Silent p.N166N 0.29 TCGA-ZF-A9R5-01 5 24537635 24537635 A T CDH10 Missense_Mutation p.L127Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R5-01 5 31317908 31317908 C T CDH6 Missense_Mutation p.R587W 0.49 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R5-01 5 56546824 56546824 A C GPBP1 Missense_Mutation p.Q346P 0.40 tolerated(0.22) benign(0.004) TCGA-ZF-A9R5-01 5 72192385 72192385 T C TNPO1 Splice_Site p.X748_splice 0.39 TCGA-ZF-A9R5-01 6 109965892 109965892 C T AK9 Splice_Site p.X254_splice 0.50 TCGA-ZF-A9R5-01 6 34100801 34100801 C T GRM4 Missense_Mutation p.G158E 0.46 tolerated(0.23) possibly_damaging(0.608) TCGA-ZF-A9R5-01 6 76715204 76715204 C T IMPG1 Missense_Mutation p.S312N 0.48 tolerated(0.49) benign(0.004) TCGA-ZF-A9R5-01 7 100175288 100175288 T C LRCH4 Missense_Mutation p.E372G 0.35 deleterious(0.03) benign(0.169) TCGA-ZF-A9R5-01 7 100282220 100282220 C A GIGYF1 Missense_Mutation p.E494D 0.33 tolerated(0.05) unknown(0) TCGA-ZF-A9R5-01 7 100320428 100320428 C T EPO Missense_Mutation p.R130C 0.64 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R5-01 7 106793667 106793667 T C PRKAR2B Missense_Mutation p.Y297H 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-ZF-A9R5-01 7 11501771 11501771 C A THSD7A Splice_Site p.X790_splice 0.47 TCGA-ZF-A9R5-01 7 137080374 137080374 T A DGKI Silent p.A1017A 0.41 TCGA-ZF-A9R5-01 7 140259611 140259611 T A DENND2A Missense_Mutation p.R596W 0.27 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R5-01 7 23556028 23556028 C G TRA2A Missense_Mutation p.R97P 0.52 tolerated(0.16) possibly_damaging(0.453) TCGA-ZF-A9R5-01 7 55912316 55912316 G A SEPT14 Missense_Mutation p.L91F 0.53 deleterious(0) probably_damaging(1) TCGA-ZF-A9R5-01 7 81746400 81746400 C A CACNA2D1 Missense_Mutation p.Q162H 0.45 deleterious(0) possibly_damaging(0.88) TCGA-ZF-A9R5-01 7 86522363 86522363 C T KIAA1324L Silent p.L913L 0.41 TCGA-ZF-A9R5-01 8 109260913 109260913 T C EIF3E Missense_Mutation p.T7A 0.48 deleterious(0) probably_damaging(0.969) TCGA-ZF-A9R5-01 8 11995991 11995991 A T USP17L2 Silent p.A93A 0.49 TCGA-ZF-A9R5-01 8 121457713 121457713 G A MTBP Translation_Start_Site p.M1? 0.33 deleterious(0) possibly_damaging(0.607) TCGA-ZF-A9R5-01 8 2044115 2044115 G A MYOM2 Silent p.T718T 0.34 TCGA-ZF-A9R5-01 8 41554000 41554000 G A ANK1 Silent p.T988T 0.26 TCGA-ZF-A9R5-01 8 77895784 77895784 T - PEX2 Frame_Shift_Del p.I211Sfs*6 0.29 TCGA-ZF-A9R5-01 9 105768065 105768065 G T CYLC2 3'UTR 0.28 TCGA-ZF-A9R5-01 9 107299072 107299072 G A OR13C3 Missense_Mutation p.T8I 0.55 deleterious_low_confidence(0.03) benign(0.003) TCGA-ZF-A9R5-01 9 113169814 113169814 T C SVEP1 Missense_Mutation p.Y2689C 0.49 probably_damaging(0.988) TCGA-ZF-A9R5-01 9 121929992 121930005 GCGCATCTGGCAGA - BRINP1 Frame_Shift_Del p.I548Kfs*16 0.33 TCGA-ZF-A9R5-01 9 35957933 35957933 G A OR2S2 Missense_Mutation p.R55C 0.40 deleterious(0.05) benign(0.009) TCGA-ZF-A9R5-01 9 79438642 79438642 C T PRUNE2 Missense_Mutation p.G221D 0.44 deleterious(0.04) probably_damaging(0.987) TCGA-ZF-A9R5-01 X 120009425 120009425 C T CT47B1 Missense_Mutation p.E34K 0.87 tolerated(0.08) probably_damaging(0.987) TCGA-ZF-A9R5-01 X 120182732 120182732 C G GLUD2 Silent p.A398A 0.90 TCGA-ZF-A9R5-01 X 153295962 153295962 C A MECP2 Silent p.A451A 0.93 TCGA-ZF-A9R5-01 X 153421955 153421955 G A OPN1LW Missense_Mutation p.A311T 0.88 deleterious(0.05) probably_damaging(1) TCGA-ZF-A9R5-01 X 44913154 44913154 T - KDM6A Frame_Shift_Del p.L277Wfs*48 0.49 TCGA-ZF-A9R7-01 10 101294995 101294995 G C NKX2-3 Missense_Mutation p.K204N 0.42 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R7-01 10 102088980 102088980 C G PKD2L1 Missense_Mutation p.D113H 0.16 deleterious(0.04) probably_damaging(0.977) TCGA-ZF-A9R7-01 10 102568920 102568920 G C PAX2 Silent p.S305S 0.39 TCGA-ZF-A9R7-01 10 104241919 104241919 C T ACTR1A Missense_Mutation p.R255Q 0.18 deleterious(0.03) benign(0.302) TCGA-ZF-A9R7-01 10 112360819 112360819 C G SMC3 Missense_Mutation p.L859V 0.31 deleterious(0.05) possibly_damaging(0.449) TCGA-ZF-A9R7-01 10 11504817 11504817 C T USP6NL Missense_Mutation p.D721N 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-ZF-A9R7-01 10 115962858 115962858 G A TDRD1 Missense_Mutation p.E242K 0.34 tolerated(0.13) possibly_damaging(0.801) TCGA-ZF-A9R7-01 10 116049005 116049005 G A VWA2 Missense_Mutation p.G627S 0.40 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 10 118314780 118314780 C T PNLIP Missense_Mutation p.T221M 0.40 deleterious(0) probably_damaging(0.973) TCGA-ZF-A9R7-01 10 118661386 118661386 C T KIAA1598 Silent p.L521L 0.18 TCGA-ZF-A9R7-01 10 11908560 11908560 G A PROSER2 Missense_Mutation p.E57K 0.35 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 10 17113832 17113832 G A CUBN Nonsense_Mutation p.Q814* 0.28 TCGA-ZF-A9R7-01 10 27037459 27037459 G C ABI1 3'UTR 0.19 TCGA-ZF-A9R7-01 10 27475452 27475452 G A MASTL Missense_Mutation p.G876E 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9R7-01 10 27538171 27538171 C G RP11-85G18.6 Intron 0.15 TCGA-ZF-A9R7-01 10 28527520 28527520 G A MPP7 Missense_Mutation p.S5L 0.24 deleterious(0) benign(0.001) TCGA-ZF-A9R7-01 10 44871472 44871472 C T CXCL12 3'Flank 0.23 TCGA-ZF-A9R7-01 10 47087991 47087991 G A NPY4R 3'UTR 0.14 TCGA-ZF-A9R7-01 10 49414918 49414918 C T FRMPD2 Missense_Mutation p.R557K 0.29 tolerated(1) benign(0) TCGA-ZF-A9R7-01 10 49414970 49414970 G A FRMPD2 Nonsense_Mutation p.Q540* 0.27 TCGA-ZF-A9R7-01 10 50723918 50723918 C T ERCC6-PGBD3 Missense_Mutation p.D883N 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-ZF-A9R7-01 10 55568475 55568475 C T PCDH15 Missense_Mutation p.E713K 0.16 deleterious_low_confidence(0) unknown(0) TCGA-ZF-A9R7-01 10 6484035 6484035 C A PRKCQ Silent p.L552L 0.33 TCGA-ZF-A9R7-01 10 70333675 70333675 C T TET1 Missense_Mutation p.S527L 0.33 tolerated(0.12) benign(0.015) TCGA-ZF-A9R7-01 10 70517109 70517109 C G CCAR1 Missense_Mutation p.S632C 0.23 deleterious(0.02) possibly_damaging(0.712) TCGA-ZF-A9R7-01 10 74886419 74886419 G A NUDT13 Intron 0.17 TCGA-ZF-A9R7-01 10 75277138 75277138 C G USP54 Missense_Mutation p.E1016Q 0.22 deleterious_low_confidence(0.01) benign(0.147) TCGA-ZF-A9R7-01 10 75757905 75757905 C A VCL 5'UTR 0.38 TCGA-ZF-A9R7-01 10 8100269 8100269 G T GATA3 Silent p.G81G 0.14 TCGA-ZF-A9R7-01 10 8100430 8100430 C T GATA3 Missense_Mutation p.P135L 0.33 deleterious(0.02) benign(0.3) TCGA-ZF-A9R7-01 10 81697561 81697561 C G SFTPD 3'UTR 0.38 TCGA-ZF-A9R7-01 10 91497594 91497594 C T KIF20B Missense_Mutation p.S959F 0.31 tolerated(0.07) possibly_damaging(0.517) TCGA-ZF-A9R7-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.26 TCGA-ZF-A9R7-01 10 97778996 97778996 G A CC2D2B Missense_Mutation p.E187K 0.11 tolerated(0.05) benign(0.057) TCGA-ZF-A9R7-01 10 99991295 99991295 G C R3HCC1L Missense_Mutation p.E604D 0.20 tolerated(0.11) possibly_damaging(0.457) TCGA-ZF-A9R7-01 11 1025268 1025268 C G MUC6 Missense_Mutation p.D967H 0.43 unknown(0) TCGA-ZF-A9R7-01 11 104905127 104905127 C T CASP1 Missense_Mutation p.E28K 0.31 tolerated(0.3) possibly_damaging(0.893) TCGA-ZF-A9R7-01 11 107917093 107917093 G A CUL5 Silent p.Q77Q 0.26 TCGA-ZF-A9R7-01 11 110306560 110306560 C T FDX1 Missense_Mutation p.S63L 0.40 tolerated(0.08) probably_damaging(0.985) TCGA-ZF-A9R7-01 11 111946328 111946328 C G C11orf57 Silent p.L10L 0.37 TCGA-ZF-A9R7-01 11 111965609 111965609 C T SDHD Missense_Mutation p.S132L 0.41 tolerated(0.14) possibly_damaging(0.467) TCGA-ZF-A9R7-01 11 118886381 118886381 C G CCDC84 3'UTR 0.67 TCGA-ZF-A9R7-01 11 119210397 119210397 C T C1QTNF5 Missense_Mutation p.D126N 0.71 tolerated(0.18) possibly_damaging(0.874) TCGA-ZF-A9R7-01 11 134254017 134254017 C T B3GAT1 Missense_Mutation p.D60N 0.25 tolerated(0.17) benign(0.001) TCGA-ZF-A9R7-01 11 14287067 14287067 C G RP11-21L19.1 Intron 0.62 TCGA-ZF-A9R7-01 11 14899649 14899649 G A CYP2R1 3'UTR 0.12 TCGA-ZF-A9R7-01 11 1643338 1643338 G A KRTAP5-4 5'UTR 0.49 TCGA-ZF-A9R7-01 11 18737214 18737214 C G IGSF22 Missense_Mutation p.E432D 0.34 tolerated(0.07) possibly_damaging(0.814) TCGA-ZF-A9R7-01 11 22277027 22277027 G A ANO5 Missense_Mutation p.E431K 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9R7-01 11 28113034 28113034 G C KIF18A Silent p.L170L 0.25 TCGA-ZF-A9R7-01 11 28119266 28119266 C G KIF18A Missense_Mutation p.D77H 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 11 33604915 33604915 G A KIAA1549L Nonsense_Mutation p.W1181* 0.30 TCGA-ZF-A9R7-01 11 4123242 4123242 C T RRM1 Silent p.V13V 0.19 TCGA-ZF-A9R7-01 11 432049 432049 C T ANO9 Missense_Mutation p.R119K 0.22 deleterious(0.01) possibly_damaging(0.505) TCGA-ZF-A9R7-01 11 47256432 47256432 G C DDB2 Missense_Mutation p.R276T 0.33 deleterious(0.04) benign(0.151) TCGA-ZF-A9R7-01 11 47289495 47289495 C G NR1H3 Missense_Mutation p.F340L 0.44 tolerated(0.44) probably_damaging(0.934) TCGA-ZF-A9R7-01 11 48267115 48267115 C T OR4X2 Missense_Mutation p.L154F 0.31 tolerated(0.41) benign(0.35) TCGA-ZF-A9R7-01 11 55798826 55798826 C T OR5AS1 Missense_Mutation p.S311L 0.36 tolerated(0.13) benign(0.001) TCGA-ZF-A9R7-01 11 59210703 59210703 C G OR5A1 Missense_Mutation p.T21R 0.29 deleterious(0.03) benign(0.025) TCGA-ZF-A9R7-01 11 59210975 59210975 C A OR5A1 Missense_Mutation p.L112M 0.27 tolerated(0.08) possibly_damaging(0.873) TCGA-ZF-A9R7-01 11 59211339 59211339 C T OR5A1 Missense_Mutation p.S233L 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-ZF-A9R7-01 11 60292761 60292761 C G MS4A13 Missense_Mutation p.H90D 0.28 tolerated(0.62) benign(0.006) TCGA-ZF-A9R7-01 11 61034934 61034934 C T VWCE Silent p.L655L 0.24 TCGA-ZF-A9R7-01 11 61034981 61034981 C T VWCE Missense_Mutation p.E640K 0.25 deleterious(0.01) possibly_damaging(0.69) TCGA-ZF-A9R7-01 11 61036467 61036467 C G VWCE Missense_Mutation p.K603N 0.54 deleterious(0.01) possibly_damaging(0.478) TCGA-ZF-A9R7-01 11 61110063 61110063 G A DAK Silent p.E236E 0.37 TCGA-ZF-A9R7-01 11 62363235 62363235 G A MTA2 Missense_Mutation p.R415W 0.11 deleterious(0.01) possibly_damaging(0.791) TCGA-ZF-A9R7-01 11 62985184 62985184 C G SLC22A25 Missense_Mutation p.R177T 0.22 tolerated(0.77) benign(0.06) TCGA-ZF-A9R7-01 11 63400560 63400560 C T ATL3 Missense_Mutation p.E349K 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 11 64698935 64698935 G C PPP2R5B Missense_Mutation p.E307Q 0.26 deleterious(0.01) probably_damaging(0.966) TCGA-ZF-A9R7-01 11 65318931 65318931 C G LTBP3 Missense_Mutation p.E521D 0.24 tolerated(0.29) benign(0.004) TCGA-ZF-A9R7-01 11 66114984 66114984 G C B3GNT1 Missense_Mutation p.F11L 0.46 tolerated(0.63) benign(0.153) TCGA-ZF-A9R7-01 11 67250653 67250653 C G AIP Silent p.L8L 0.25 TCGA-ZF-A9R7-01 11 67864565 67864565 G A CHKA Missense_Mutation p.S128F 0.33 deleterious(0) probably_damaging(0.961) TCGA-ZF-A9R7-01 11 7661079 7661079 G A PPFIBP2 Silent p.T451T 0.43 TCGA-ZF-A9R7-01 11 77330732 77330732 C G CLNS1A Missense_Mutation p.E219Q 0.10 tolerated(0.1) benign(0.259) TCGA-ZF-A9R7-01 11 77632406 77632406 G A INTS4 Missense_Mutation p.H582Y 0.04 deleterious(0.01) possibly_damaging(0.899) TCGA-ZF-A9R7-01 11 9055266 9055266 C A SCUBE2 Intron 0.45 TCGA-ZF-A9R7-01 12 100904639 100904639 C T NR1H4 Missense_Mutation p.P65S 0.11 tolerated(0.08) benign(0.057) TCGA-ZF-A9R7-01 12 10233965 10233965 G C CLEC1A Missense_Mutation p.Q88E 0.35 tolerated(0.52) benign(0) TCGA-ZF-A9R7-01 12 104327748 104327748 G C HSP90B1 Missense_Mutation p.K142N 0.19 tolerated(0.96) benign(0.007) TCGA-ZF-A9R7-01 12 106704887 106704887 G C TCP11L2 Missense_Mutation p.E12Q 0.13 deleterious(0.01) possibly_damaging(0.603) TCGA-ZF-A9R7-01 12 112082359 112082359 G A BRAP Nonsense_Mutation p.Q475* 0.30 TCGA-ZF-A9R7-01 12 112630890 112630890 C G HECTD4 Missense_Mutation p.E2875Q 0.40 probably_damaging(0.947) TCGA-ZF-A9R7-01 12 113444350 113444350 C A OAS2 Missense_Mutation p.S534Y 0.33 deleterious(0.01) possibly_damaging(0.845) TCGA-ZF-A9R7-01 12 120599780 120599780 G T GCN1L1 Missense_Mutation p.S749Y 0.41 benign(0.326) TCGA-ZF-A9R7-01 12 120600994 120600994 G T GCN1L1 Missense_Mutation p.P640T 0.39 probably_damaging(0.985) TCGA-ZF-A9R7-01 12 123087421 123087421 C G KNTC1 Missense_Mutation p.S1624W 0.35 deleterious(0) possibly_damaging(0.776) TCGA-ZF-A9R7-01 12 123780593 123780593 C G SBNO1 Missense_Mutation p.L1348F 0.35 deleterious(0.02) benign(0.122) TCGA-ZF-A9R7-01 12 125437065 125437065 G A DHX37 Missense_Mutation p.P916L 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-ZF-A9R7-01 12 125834737 125834737 C A TMEM132B Silent p.V264V 0.34 TCGA-ZF-A9R7-01 12 13768147 13768147 G A GRIN2B Nonsense_Mutation p.R519* 0.34 TCGA-ZF-A9R7-01 12 21621599 21621599 G C PYROXD1 Missense_Mutation p.E472Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 12 22487047 22487047 G T ST8SIA1 Silent p.L40L 0.42 TCGA-ZF-A9R7-01 12 247556 247556 C T IQSEC3 Silent p.L343L 0.15 TCGA-ZF-A9R7-01 12 25267707 25267707 C G CASC1 Missense_Mutation p.L498F 0.28 deleterious(0.02) probably_damaging(0.962) TCGA-ZF-A9R7-01 12 2939757 2939757 G C NRIP2 Intron 0.38 TCGA-ZF-A9R7-01 12 42835177 42835177 C G PPHLN1 Missense_Mutation p.P324A 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-ZF-A9R7-01 12 50524372 50524372 G A CERS5 Missense_Mutation p.R379W 0.34 tolerated(0.19) benign(0.002) TCGA-ZF-A9R7-01 12 51080434 51080434 C T DIP2B Missense_Mutation p.S507L 0.11 tolerated(0.13) benign(0.005) TCGA-ZF-A9R7-01 12 5154277 5154277 G A KCNA5 Missense_Mutation p.D322N 0.30 tolerated(0.07) probably_damaging(0.998) TCGA-ZF-A9R7-01 12 54405200 54405200 C G HOXC8 3'UTR 0.27 TCGA-ZF-A9R7-01 12 54676013 54676013 G A HNRNPA1 Missense_Mutation p.R140Q 0.24 tolerated(0.26) benign(0.338) TCGA-ZF-A9R7-01 12 56088298 56088298 G C ITGA7 Missense_Mutation p.F766L 0.24 deleterious(0.01) benign(0.121) TCGA-ZF-A9R7-01 12 56994883 56994883 C G BAZ2A Splice_Site p.X1434_splice 0.32 TCGA-ZF-A9R7-01 12 57599381 57599381 C G LRP1 Silent p.L3837L 0.37 TCGA-ZF-A9R7-01 12 57868242 57868242 C T ARHGAP9 Missense_Mutation p.D583N 0.29 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 12 62996642 62996642 G T C12orf61 3'UTR 0.21 TCGA-ZF-A9R7-01 12 6457896 6457896 G A SCNN1A Silent p.V601V 0.36 TCGA-ZF-A9R7-01 12 65085310 65085310 C A RASSF3 Missense_Mutation p.P173H 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 12 65085318 65085318 G T RASSF3 Missense_Mutation p.D176Y 0.21 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9R7-01 12 6697466 6697466 G C CHD4 Missense_Mutation p.Q1155E 0.26 deleterious(0) benign(0.003) TCGA-ZF-A9R7-01 12 6858131 6858131 C G MLF2 Missense_Mutation p.D193H 0.28 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 12 7047656 7047656 G T ATN1 Nonsense_Mutation p.E844* 0.35 TCGA-ZF-A9R7-01 12 70929906 70929906 G C PTPRB Missense_Mutation p.Q1994E 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 12 71148004 71148004 G C PTPRR Silent p.L235L 0.26 TCGA-ZF-A9R7-01 12 7173213 7173213 C T C1S Silent p.I270I 0.41 TCGA-ZF-A9R7-01 12 78540152 78540152 G A NAV3 Missense_Mutation p.E1563K 0.22 deleterious(0.01) possibly_damaging(0.769) TCGA-ZF-A9R7-01 12 7899996 7899996 C G CLEC4C 5'UTR 0.38 TCGA-ZF-A9R7-01 12 81746939 81746939 C T PPFIA2 Missense_Mutation p.M651I 0.07 tolerated(0.45) benign(0.012) TCGA-ZF-A9R7-01 12 8376743 8376743 C T FAM90A1 Nonsense_Mutation p.W64* 0.14 TCGA-ZF-A9R7-01 12 85674217 85674217 G C ALX1 Missense_Mutation p.E60Q 0.36 deleterious_low_confidence(0.04) benign(0.082) TCGA-ZF-A9R7-01 12 88560325 88560325 G C TMTC3 Missense_Mutation p.R339T 0.07 tolerated(0.46) benign(0.004) TCGA-ZF-A9R7-01 12 92538201 92538201 G T BTG1 Missense_Mutation p.F57L 0.37 deleterious(0) probably_damaging(0.98) TCGA-ZF-A9R7-01 12 9266109 9266109 G C A2M Silent p.L39L 0.44 TCGA-ZF-A9R7-01 12 9316282 9316282 G C PZP Missense_Mutation p.I906M 0.31 deleterious(0.01) possibly_damaging(0.459) TCGA-ZF-A9R7-01 13 110829254 110829254 C T COL4A1 Silent p.Q949Q 0.28 TCGA-ZF-A9R7-01 13 25264757 25264757 C G ATP12A Missense_Mutation p.L233V 0.13 deleterious(0) benign(0.073) TCGA-ZF-A9R7-01 13 26787920 26787920 C G RNF6 3'UTR 0.28 TCGA-ZF-A9R7-01 13 31728800 31728800 G C HSPH1 Silent p.L133L 0.24 TCGA-ZF-A9R7-01 13 36242531 36242531 G A NBEA Silent p.Q2875Q 0.47 TCGA-ZF-A9R7-01 13 37582296 37582296 C T EXOSC8 Missense_Mutation p.S197F 0.28 deleterious(0) probably_damaging(0.989) TCGA-ZF-A9R7-01 13 37603941 37603941 G A SUPT20H Silent p.I318I 0.37 TCGA-ZF-A9R7-01 13 39262679 39262679 G A FREM2 Missense_Mutation p.E400K 0.13 tolerated(0.73) benign(0.021) TCGA-ZF-A9R7-01 13 46594629 46594629 G A ZC3H13 Missense_Mutation p.P135S 0.12 unknown(0) TCGA-ZF-A9R7-01 13 49281647 49281647 G A CYSLTR2 Missense_Mutation p.E232K 0.20 tolerated(0.78) benign(0.01) TCGA-ZF-A9R7-01 13 73636358 73636358 C T KLF5 Silent p.F207F 0.31 TCGA-ZF-A9R7-01 13 77566169 77566169 C T CLN5 Missense_Mutation p.P28L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-ZF-A9R7-01 13 77644831 77644831 C G MYCBP2 Missense_Mutation p.D3909H 0.35 probably_damaging(0.997) TCGA-ZF-A9R7-01 13 79911419 79911419 G A RBM26 Missense_Mutation p.L824F 0.44 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 13 94482494 94482494 C T GPC6 Missense_Mutation p.S136L 0.15 deleterious(0.01) possibly_damaging(0.507) TCGA-ZF-A9R7-01 13 99508187 99508187 C T DOCK9 Missense_Mutation p.E1266K 0.33 tolerated(0.24) benign(0.127) TCGA-ZF-A9R7-01 14 102349793 102349793 G C PPP2R5C Missense_Mutation p.D206H 0.44 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 14 107198952 107198952 C T IGHV3-72 Missense_Mutation p.A113T 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZF-A9R7-01 14 20444551 20444551 G A OR4K15 Missense_Mutation p.D292N 0.30 tolerated(0.13) possibly_damaging(0.651) TCGA-ZF-A9R7-01 14 21526415 21526415 G C RNASE8 Missense_Mutation p.E122Q 0.28 tolerated(0.14) benign(0.298) TCGA-ZF-A9R7-01 14 22475835 22475835 C T TRAV19 5'UTR 0.30 TCGA-ZF-A9R7-01 14 23315062 23315062 G C MMP14 Missense_Mutation p.E521D 0.33 tolerated(0.55) benign(0.007) TCGA-ZF-A9R7-01 14 25045430 25045430 C G CTSG 5'UTR 0.33 TCGA-ZF-A9R7-01 14 28733713 28733713 C T BNIP3P1 RNA 0.33 TCGA-ZF-A9R7-01 14 29237831 29237831 C T FOXG1 Missense_Mutation p.S449L 0.34 deleterious_low_confidence(0.05) benign(0.368) TCGA-ZF-A9R7-01 14 29237980 29237980 G A FOXG1 3'UTR 0.30 TCGA-ZF-A9R7-01 14 60194249 60194249 C T RTN1 Missense_Mutation p.E385K 0.22 tolerated(0.32) benign(0.003) TCGA-ZF-A9R7-01 14 65246547 65246547 C T SPTB Missense_Mutation p.E1457K 0.22 tolerated(0.12) possibly_damaging(0.61) TCGA-ZF-A9R7-01 14 68029604 68029604 C T PLEKHH1 Missense_Mutation p.S419L 0.29 deleterious(0) benign(0.024) TCGA-ZF-A9R7-01 14 71209105 71209105 C T MAP3K9 Silent p.L510L 0.29 TCGA-ZF-A9R7-01 14 71209258 71209258 C A MAP3K9 Missense_Mutation p.K459N 0.41 deleterious(0) possibly_damaging(0.817) TCGA-ZF-A9R7-01 14 74186066 74186066 C G ELMSAN1 Missense_Mutation p.E1026Q 0.33 tolerated(0.09) probably_damaging(0.94) TCGA-ZF-A9R7-01 14 74416800 74416800 G A COQ6 5'Flank 0.52 TCGA-ZF-A9R7-01 14 74567871 74567871 C A LIN52 Silent p.L75L 0.32 TCGA-ZF-A9R7-01 14 76964702 76964702 G A ESRRB Silent p.Q401Q 0.39 TCGA-ZF-A9R7-01 14 92601740 92601740 C T CPSF2 Silent p.L149L 0.29 TCGA-ZF-A9R7-01 14 93650595 93650595 G A MOAP1 5'UTR 0.38 TCGA-ZF-A9R7-01 15 28277234 28277234 C T OCA2 Silent p.L101L 0.26 TCGA-ZF-A9R7-01 15 31295173 31295173 C G TRPM1 Missense_Mutation p.E1261Q 0.45 deleterious(0) possibly_damaging(0.675) TCGA-ZF-A9R7-01 15 33954408 33954408 C T RYR3 Silent p.Y1559Y 0.40 TCGA-ZF-A9R7-01 15 35155072 35155072 C G AQR Missense_Mutation p.R1342T 0.47 tolerated(0.05) possibly_damaging(0.607) TCGA-ZF-A9R7-01 15 35178756 35178756 C T AQR Missense_Mutation p.E930K 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 15 40655992 40655992 C T DISP2 Missense_Mutation p.P96S 0.20 tolerated_low_confidence(0.1) benign(0.032) TCGA-ZF-A9R7-01 15 40764649 40764649 C T CHST14 3'UTR 0.25 TCGA-ZF-A9R7-01 15 41657766 41657766 C G NUSAP1 Missense_Mutation p.S276C 0.50 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R7-01 15 42714754 42714754 C T ZNF106 Missense_Mutation p.G1750E 0.33 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 15 43748764 43748764 C G TP53BP1 Missense_Mutation p.G681A 0.22 tolerated(0.4) benign(0.197) TCGA-ZF-A9R7-01 15 45722879 45722879 G C C15orf48 5'UTR 0.56 TCGA-ZF-A9R7-01 15 45723015 45723015 G C C15orf48 Silent p.L7L 0.34 TCGA-ZF-A9R7-01 15 58000997 58000997 G C POLR2M Missense_Mutation p.E67Q 0.21 deleterious(0.01) possibly_damaging(0.888) TCGA-ZF-A9R7-01 15 60970881 60970881 G C RP11-219B17.2 5'Flank 0.18 TCGA-ZF-A9R7-01 15 63947995 63947995 C G HERC1 Missense_Mutation p.D3344H 0.56 probably_damaging(0.999) TCGA-ZF-A9R7-01 15 64915042 64915042 C T ZNF609 Missense_Mutation p.S255F 0.15 tolerated(0.2) possibly_damaging(0.865) TCGA-ZF-A9R7-01 15 73067284 73067284 C G ADPGK Missense_Mutation p.E130Q 0.27 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 15 75664520 75664520 G C SIN3A Missense_Mutation p.Q1208E 0.29 tolerated(0.44) benign(0.009) TCGA-ZF-A9R7-01 15 77228016 77228016 G C RCN2 Missense_Mutation p.D134H 0.29 deleterious(0) probably_damaging(0.921) TCGA-ZF-A9R7-01 15 78211488 78211488 G C RP11-114H24.7 Intron 0.33 TCGA-ZF-A9R7-01 15 80414150 80414150 C T ZFAND6 Missense_Mutation p.S84F 0.24 deleterious(0.02) benign(0.372) TCGA-ZF-A9R7-01 15 81187357 81187357 C G KIAA1199 Silent p.L371L 0.27 TCGA-ZF-A9R7-01 15 83932769 83932769 G C BNC1 Missense_Mutation p.R412G 0.32 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 15 86125001 86125001 C G AKAP13 Silent p.V1234V 0.32 TCGA-ZF-A9R7-01 15 86266526 86266526 G A AKAP13 Silent p.L2244L 0.19 TCGA-ZF-A9R7-01 15 88799389 88799389 G A NTRK3 5'UTR 0.24 TCGA-ZF-A9R7-01 15 90167053 90167053 C G TICRR Nonsense_Mutation p.S1171* 0.04 TCGA-ZF-A9R7-01 15 90190165 90190165 G A KIF7 Nonsense_Mutation p.R562* 0.40 TCGA-ZF-A9R7-01 15 90771203 90771203 C G SEMA4B Silent p.L614L 0.28 TCGA-ZF-A9R7-01 15 90774423 90774423 C G CIB1 Missense_Mutation p.L123F 0.29 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 15 97327388 97327388 C T SPATA8 Missense_Mutation p.S32L 0.38 tolerated_low_confidence(0.12) possibly_damaging(0.519) TCGA-ZF-A9R7-01 16 11272295 11272295 G C CLEC16A Missense_Mutation p.R970S 0.25 tolerated_low_confidence(0.09) benign(0.04) TCGA-ZF-A9R7-01 16 20489937 20489937 G A ACSM2A Missense_Mutation p.E407K 0.30 deleterious(0.01) benign(0.021) TCGA-ZF-A9R7-01 16 249172 249172 G T LUC7L Silent p.V192V 0.46 TCGA-ZF-A9R7-01 16 24931552 24931552 G A ARHGAP17 Missense_Mutation p.R849C 0.38 deleterious_low_confidence(0) benign(0) TCGA-ZF-A9R7-01 16 29102124 29102124 C G RRN3P2 RNA 0.06 TCGA-ZF-A9R7-01 16 29825761 29825761 C A PRRT2 Silent p.I329I 0.28 TCGA-ZF-A9R7-01 16 30128091 30128091 G A MAPK3 Silent p.F346F 0.19 TCGA-ZF-A9R7-01 16 30620934 30620934 G A ZNF689 Silent p.L77L 0.25 TCGA-ZF-A9R7-01 16 30768604 30768604 G C PHKG2 3'UTR 0.20 TCGA-ZF-A9R7-01 16 30774487 30774487 G A RNF40 Missense_Mutation p.E61K 0.34 deleterious(0.01) benign(0.184) TCGA-ZF-A9R7-01 16 3107106 3107106 C T MMP25 Missense_Mutation p.S245L 0.38 deleterious(0) probably_damaging(0.975) TCGA-ZF-A9R7-01 16 4745141 4745141 G A NUDT16L1 Silent p.Q199Q 0.30 TCGA-ZF-A9R7-01 16 48201146 48201146 G C ABCC11 3'UTR 0.13 TCGA-ZF-A9R7-01 16 4847736 4847736 G C ROGDI Silent p.L267L 0.25 TCGA-ZF-A9R7-01 16 4945331 4945331 G C PPL Silent p.L391L 0.14 TCGA-ZF-A9R7-01 16 53670401 53670401 C T RPGRIP1L Missense_Mutation p.D1082N 0.35 deleterious(0) benign(0.103) TCGA-ZF-A9R7-01 16 53726146 53726146 C T RPGRIP1L Missense_Mutation p.E121K 0.30 deleterious(0.04) benign(0.155) TCGA-ZF-A9R7-01 16 56423280 56423280 G C AMFR Missense_Mutation p.L365V 0.45 deleterious(0.04) possibly_damaging(0.9) TCGA-ZF-A9R7-01 16 56531756 56531756 C T BBS2 Missense_Mutation p.D566N 0.41 tolerated(0.09) possibly_damaging(0.596) TCGA-ZF-A9R7-01 16 56852645 56852645 C T NUP93 Missense_Mutation p.R187W 0.12 deleterious(0) probably_damaging(0.977) TCGA-ZF-A9R7-01 16 57789974 57789974 G A KATNB1 Missense_Mutation p.E572K 0.47 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 16 58286671 58286671 G C CCDC113 Missense_Mutation p.E48Q 0.11 tolerated(0.07) benign(0.323) TCGA-ZF-A9R7-01 16 66969208 66969208 G C CES2 5'UTR 0.65 TCGA-ZF-A9R7-01 16 68293372 68293372 G A PLA2G15 Missense_Mutation p.D351N 0.56 tolerated(0.06) probably_damaging(0.936) TCGA-ZF-A9R7-01 16 69833131 69833131 G C WWP2 Missense_Mutation p.L91F 0.12 tolerated(0.3) probably_damaging(0.997) TCGA-ZF-A9R7-01 16 70514780 70514780 C T COG4 3'UTR 0.50 TCGA-ZF-A9R7-01 16 71411635 71411635 C T CALB2 Silent p.S109S 0.13 TCGA-ZF-A9R7-01 16 71682725 71682725 G A PHLPP2 3'UTR 0.18 TCGA-ZF-A9R7-01 16 71683215 71683215 G A PHLPP2 Missense_Mutation p.P1184S 0.19 tolerated_low_confidence(0.24) benign(0.027) TCGA-ZF-A9R7-01 16 71683616 71683616 G A PHLPP2 Missense_Mutation p.P1050L 0.17 deleterious_low_confidence(0.01) benign(0.146) TCGA-ZF-A9R7-01 16 72827194 72827194 G A ZFHX3 Silent p.L3129L 0.65 TCGA-ZF-A9R7-01 16 72829014 72829014 G A ZFHX3 Silent p.L2523L 0.13 TCGA-ZF-A9R7-01 16 74425496 74425496 G C NPIPB15 Missense_Mutation p.E284Q 0.21 tolerated_low_confidence(0.15) possibly_damaging(0.646) TCGA-ZF-A9R7-01 16 75642880 75642880 C G ADAT1 Missense_Mutation p.Q350H 0.22 tolerated(0.09) benign(0.038) TCGA-ZF-A9R7-01 16 76532578 76532578 C G CNTNAP4 Silent p.L711L 0.16 TCGA-ZF-A9R7-01 16 80718550 80718550 C T CDYL2 Silent p.E167E 0.08 TCGA-ZF-A9R7-01 16 81960775 81960775 G C PLCG2 Missense_Mutation p.E836Q 0.10 tolerated(0.25) benign(0.146) TCGA-ZF-A9R7-01 16 837808 837808 G C RPUSD1 5'UTR 0.52 TCGA-ZF-A9R7-01 17 11806137 11806137 G A DNAH9 Silent p.E3836E 0.45 TCGA-ZF-A9R7-01 17 18150557 18150557 C G FLII Missense_Mutation p.E868Q 0.44 tolerated(0.52) benign(0.206) TCGA-ZF-A9R7-01 17 19458572 19458572 C T SLC47A1 Silent p.V197V 0.43 TCGA-ZF-A9R7-01 17 26816303 26816303 C T SLC13A2 Silent p.V58V 0.31 TCGA-ZF-A9R7-01 17 26969903 26969903 C G KIAA0100 Missense_Mutation p.D167H 0.31 deleterious(0.01) possibly_damaging(0.743) TCGA-ZF-A9R7-01 17 28849462 28849462 C T GOSR1 3'UTR 0.37 TCGA-ZF-A9R7-01 17 29632166 29632166 C T EVI2B Silent p.Q154Q 0.37 TCGA-ZF-A9R7-01 17 33469022 33469022 G A NLE1 Silent p.L46L 0.38 TCGA-ZF-A9R7-01 17 34068249 34068249 C A RASL10B Nonsense_Mutation p.C179* 0.29 TCGA-ZF-A9R7-01 17 34416544 34416544 G A CCL3 Missense_Mutation p.S58F 0.17 deleterious(0) possibly_damaging(0.847) TCGA-ZF-A9R7-01 17 35454833 35454833 G A ACACA Nonsense_Mutation p.Q2218* 0.38 TCGA-ZF-A9R7-01 17 37649014 37649014 C T CDK12 Missense_Mutation p.P707S 0.15 probably_damaging(0.998) TCGA-ZF-A9R7-01 17 37880257 37880257 C G ERBB2 Missense_Mutation p.I767M 0.27 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 17 39324303 39324303 C T KRTAP4-3 Missense_Mutation p.R41H 0.22 deleterious(0.03) unknown(0) TCGA-ZF-A9R7-01 17 40705874 40705874 C T HSD17B1 Silent p.L170L 0.19 TCGA-ZF-A9R7-01 17 40716490 40716490 G C COASY Missense_Mutation p.Q343H 0.35 tolerated(0.06) probably_damaging(0.997) TCGA-ZF-A9R7-01 17 41168485 41168485 C T VAT1 Missense_Mutation p.A313T 0.37 tolerated(0.18) benign(0.377) TCGA-ZF-A9R7-01 17 41585254 41585254 C T DHX8 Silent p.F729F 0.26 TCGA-ZF-A9R7-01 17 42853498 42853498 G A ADAM11 Missense_Mutation p.E497K 0.30 tolerated(0.19) benign(0.012) TCGA-ZF-A9R7-01 17 43332860 43332860 G C SPATA32 Nonsense_Mutation p.S230* 0.43 TCGA-ZF-A9R7-01 17 43333102 43333102 G A SPATA32 Silent p.I149I 0.29 TCGA-ZF-A9R7-01 17 43515200 43515200 C G PLEKHM1 3'UTR 0.25 TCGA-ZF-A9R7-01 17 47075046 47075046 C T IGF2BP1 5'UTR 0.13 TCGA-ZF-A9R7-01 17 47284000 47284000 C T GNGT2 3'UTR 0.21 TCGA-ZF-A9R7-01 17 47284217 47284217 C T GNGT2 Missense_Mutation p.E38K 0.29 tolerated(0.24) benign(0.24) TCGA-ZF-A9R7-01 17 48452684 48452684 G A EME1 Missense_Mutation p.E39K 0.34 tolerated(0.49) benign(0.004) TCGA-ZF-A9R7-01 17 51900569 51900569 G T KIF2B Nonsense_Mutation p.E59* 0.30 TCGA-ZF-A9R7-01 17 55693436 55693436 G C MSI2 Missense_Mutation p.G215R 0.39 tolerated(0.05) benign(0.005) TCGA-ZF-A9R7-01 17 56604309 56604309 C T SEPT4 Missense_Mutation p.D46N 0.33 tolerated_low_confidence(0.09) benign(0.011) TCGA-ZF-A9R7-01 17 56787259 56787259 C T RAD51C Missense_Mutation p.R249C 0.29 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 17 59479191 59479191 A G TBX2 Missense_Mutation p.E181G 0.05 deleterious(0) possibly_damaging(0.689) TCGA-ZF-A9R7-01 17 59485544 59485544 C G TBX2 Missense_Mutation p.L606V 0.27 tolerated(0.66) benign(0.147) TCGA-ZF-A9R7-01 17 60033200 60033200 C T MED13 Splice_Site p.X1875_splice 0.29 TCGA-ZF-A9R7-01 17 60072632 60072632 C T MED13 Missense_Mutation p.D688N 0.29 tolerated(0.07) benign(0.009) TCGA-ZF-A9R7-01 17 60749412 60749412 G C MRC2 Missense_Mutation p.E454Q 0.25 tolerated(0.54) benign(0.391) TCGA-ZF-A9R7-01 17 61886279 61886279 G C DDX42 Missense_Mutation p.E375Q 0.33 tolerated(0.22) benign(0.398) TCGA-ZF-A9R7-01 17 62499397 62499397 C G DDX5 Missense_Mutation p.R240T 0.33 deleterious(0) possibly_damaging(0.741) TCGA-ZF-A9R7-01 17 71364669 71364669 C A SDK2 Nonsense_Mutation p.E1682* 0.47 TCGA-ZF-A9R7-01 17 71386516 71386516 C G SDK2 Missense_Mutation p.E1368Q 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-ZF-A9R7-01 17 72584701 72584701 C T CD300LD Missense_Mutation p.E110K 0.30 deleterious(0.01) benign(0.44) TCGA-ZF-A9R7-01 17 76045867 76045867 G T TNRC6C Nonsense_Mutation p.E242* 0.36 TCGA-ZF-A9R7-01 17 76525741 76525741 C T DNAH17 Missense_Mutation p.R1107K 0.08 benign(0.001) TCGA-ZF-A9R7-01 17 7793025 7793025 G C CHD3 Missense_Mutation p.K107N 0.30 benign(0.403) TCGA-ZF-A9R7-01 17 78073383 78073383 G C CCDC40 Missense_Mutation p.E1080Q 0.25 deleterious(0.05) benign(0.265) TCGA-ZF-A9R7-01 17 78327552 78327552 G A RNF213 Intron 0.25 TCGA-ZF-A9R7-01 17 79094976 79094976 G A AATK Silent p.F920F 0.25 TCGA-ZF-A9R7-01 17 79496035 79496035 G T FSCN2 Nonsense_Mutation p.E160* 0.33 TCGA-ZF-A9R7-01 17 79847195 79847195 G T ALYREF Missense_Mutation p.A134D 0.10 deleterious(0) probably_damaging(0.926) TCGA-ZF-A9R7-01 17 79988571 79988571 G A LRRC45 Missense_Mutation p.E635K 0.33 deleterious(0) possibly_damaging(0.848) TCGA-ZF-A9R7-01 17 80890567 80890567 C T TBCD Silent p.H1049H 0.37 TCGA-ZF-A9R7-01 17 8526411 8526411 C G MYH10 Missense_Mutation p.E52Q 0.43 benign(0.043) TCGA-ZF-A9R7-01 18 21331013 21331013 C T LAMA3 Silent p.L272L 0.27 TCGA-ZF-A9R7-01 18 28916510 28916510 C G DSG1 Nonsense_Mutation p.S400* 0.32 TCGA-ZF-A9R7-01 18 29493399 29493399 C G TRAPPC8 Missense_Mutation p.R235P 0.34 tolerated(0.29) benign(0.006) TCGA-ZF-A9R7-01 18 3112337 3112337 G T MYOM1 Missense_Mutation p.P1126Q 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-ZF-A9R7-01 18 33243816 33243816 G C GALNT1 Intron 0.29 TCGA-ZF-A9R7-01 18 34740319 34740319 G C KIAA1328 Missense_Mutation p.K463N 0.48 deleterious(0) possibly_damaging(0.897) TCGA-ZF-A9R7-01 18 40500684 40500684 C T RIT2 Intron 0.38 TCGA-ZF-A9R7-01 18 5406807 5406807 G A EPB41L3 Missense_Mutation p.A773V 0.32 deleterious(0) possibly_damaging(0.529) TCGA-ZF-A9R7-01 18 56376610 56376610 G A MALT1 Missense_Mutation p.R217K 0.25 tolerated(0.94) benign(0) TCGA-ZF-A9R7-01 18 56897662 56897662 C G GRP Missense_Mutation p.Q137E 0.49 tolerated_low_confidence(0.13) benign(0.024) TCGA-ZF-A9R7-01 18 627096 627096 G T CLUL1 Splice_Site p.X142_splice 0.25 TCGA-ZF-A9R7-01 18 72344991 72344991 A G ZNF407 Silent p.K672K 0.61 TCGA-ZF-A9R7-01 18 74649157 74649157 C T ZNF236 Missense_Mutation p.S1545F 0.61 deleterious(0) possibly_damaging(0.905) TCGA-ZF-A9R7-01 18 9257709 9257709 C A ANKRD12 Missense_Mutation p.P1482T 0.21 tolerated_low_confidence(0.06) benign(0.14) TCGA-ZF-A9R7-01 19 10402390 10402390 G C ICAM5 Missense_Mutation p.G193A 0.68 deleterious(0.02) benign(0.044) TCGA-ZF-A9R7-01 19 11594542 11594542 G A ZNF653 Silent p.V601V 0.46 TCGA-ZF-A9R7-01 19 11976998 11976998 C G ZNF439 Silent p.L9L 0.64 TCGA-ZF-A9R7-01 19 12491855 12491855 G C CTD-3105H18.14 3'UTR 0.19 TCGA-ZF-A9R7-01 19 13051060 13051060 G A CALR Missense_Mutation p.D166N 0.63 tolerated(0.15) probably_damaging(0.987) TCGA-ZF-A9R7-01 19 13051099 13051099 G C CALR Missense_Mutation p.D179H 0.67 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 19 13051185 13051185 G A CALR Silent p.K207K 0.56 TCGA-ZF-A9R7-01 19 13051415 13051415 G A CALR Missense_Mutation p.E255K 0.74 deleterious(0) probably_damaging(0.94) TCGA-ZF-A9R7-01 19 13051418 13051418 G A CALR Missense_Mutation p.E256K 0.74 deleterious(0.01) probably_damaging(0.977) TCGA-ZF-A9R7-01 19 15728951 15728951 C T AD000091.2 5'Flank 0.13 TCGA-ZF-A9R7-01 19 16989123 16989123 C G SIN3B Silent p.L1060L 0.24 TCGA-ZF-A9R7-01 19 17305933 17305933 G A MYO9B Missense_Mutation p.E1233K 0.27 tolerated(0.41) benign(0.031) TCGA-ZF-A9R7-01 19 17534812 17534812 C T MVB12A Intron 0.15 TCGA-ZF-A9R7-01 19 18180504 18180504 G A IL12RB1 Silent p.I347I 0.71 TCGA-ZF-A9R7-01 19 18963051 18963051 C T UPF1 Silent p.F306F 0.66 TCGA-ZF-A9R7-01 19 2180733 2180733 C T DOT1L Missense_Mutation p.H35Y 0.52 deleterious(0.05) possibly_damaging(0.906) TCGA-ZF-A9R7-01 19 23415058 23415058 G A ZNF724P Missense_Mutation p.S14F 0.25 deleterious(0) probably_damaging(0.951) TCGA-ZF-A9R7-01 19 2939325 2939325 G C ZNF77 Silent p.L28L 0.48 TCGA-ZF-A9R7-01 19 40741238 40741238 C T AKT2 Missense_Mutation p.D399N 0.16 deleterious(0.03) benign(0.348) TCGA-ZF-A9R7-01 19 40883925 40883925 G A PLD3 Missense_Mutation p.E440K 0.16 tolerated(0.19) benign(0.001) TCGA-ZF-A9R7-01 19 41800562 41800562 C T HNRNPUL1 Missense_Mutation p.R497C 0.69 deleterious(0.01) unknown(0) TCGA-ZF-A9R7-01 19 41888957 41888957 C T TMEM91 Intron 0.19 TCGA-ZF-A9R7-01 19 4292535 4292535 C T TMIGD2 3'UTR 0.73 TCGA-ZF-A9R7-01 19 43383825 43383825 C G PSG1 5'UTR 0.59 TCGA-ZF-A9R7-01 19 44130060 44130060 C T CADM4 Intron 0.58 TCGA-ZF-A9R7-01 19 44273868 44273868 C A KCNN4 Intron 0.62 TCGA-ZF-A9R7-01 19 4512190 4512190 C T PLIN4 Silent p.L580L 0.55 TCGA-ZF-A9R7-01 19 45540670 45540670 C T RELB Silent p.F454F 0.56 TCGA-ZF-A9R7-01 19 45540802 45540802 C G RELB Silent p.L498L 0.58 TCGA-ZF-A9R7-01 19 46443426 46443426 C T NOVA2 Missense_Mutation p.G392R 0.42 tolerated(0.36) benign(0.009) TCGA-ZF-A9R7-01 19 47585484 47585484 G A ZC3H4 Silent p.I429I 0.12 TCGA-ZF-A9R7-01 19 49519531 49519531 G A LHB Nonsense_Mutation p.Q74* 0.60 TCGA-ZF-A9R7-01 19 49540048 49540048 G T CGB1 5'UTR 0.21 TCGA-ZF-A9R7-01 19 50154448 50154448 G C SCAF1 Missense_Mutation p.E268Q 0.71 unknown(0) TCGA-ZF-A9R7-01 19 50154457 50154457 G T SCAF1 Nonsense_Mutation p.E271* 0.68 TCGA-ZF-A9R7-01 19 50827183 50827183 C T KCNC3 Missense_Mutation p.E343K 0.11 tolerated(0.1) possibly_damaging(0.459) TCGA-ZF-A9R7-01 19 50958429 50958429 C T MYBPC2 Silent p.F693F 0.28 TCGA-ZF-A9R7-01 19 51329903 51329903 C G KLK15 Missense_Mutation p.E198Q 0.53 tolerated(0.34) possibly_damaging(0.791) TCGA-ZF-A9R7-01 19 51607326 51607326 G A CTU1 Silent p.I167I 0.86 TCGA-ZF-A9R7-01 19 52537404 52537404 C G ZNF432 Missense_Mutation p.E510Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-A9R7-01 19 53612988 53612988 C T ZNF415 Missense_Mutation p.E104K 0.56 tolerated(0.2) possibly_damaging(0.908) TCGA-ZF-A9R7-01 19 53912382 53912382 G C ZNF765 3'UTR 0.17 TCGA-ZF-A9R7-01 19 54744749 54744749 C G LILRA6 Missense_Mutation p.E305Q 0.11 deleterious(0.05) possibly_damaging(0.904) TCGA-ZF-A9R7-01 19 54760855 54760855 C G LILRB5 Silent p.L13L 0.55 TCGA-ZF-A9R7-01 19 55512138 55512138 G C NLRP2 Missense_Mutation p.D1021H 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-ZF-A9R7-01 19 55527085 55527085 G C GP6 Missense_Mutation p.I247M 0.19 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-ZF-A9R7-01 19 58190191 58190191 A T ZSCAN4 Missense_Mutation p.Q407L 0.68 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9R7-01 19 58384348 58384348 C G ZNF814 Missense_Mutation p.E804Q 0.23 deleterious(0.02) benign(0.117) TCGA-ZF-A9R7-01 19 7505313 7505313 C G ARHGEF18 Missense_Mutation p.Q163E 0.24 deleterious(0.01) possibly_damaging(0.571) TCGA-ZF-A9R7-01 19 757788 757788 C T MISP Missense_Mutation p.S281L 0.61 tolerated(0.21) benign(0.016) TCGA-ZF-A9R7-01 19 8038740 8038740 G C ELAVL1 Nonsense_Mutation p.S100* 0.53 TCGA-ZF-A9R7-01 19 9271555 9271555 C G ZNF317 Missense_Mutation p.H412D 0.06 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 1 10364202 10364202 G C KIF1B Intron 0.38 TCGA-ZF-A9R7-01 1 108724616 108724616 G A SLC25A24 Silent p.L115L 0.35 TCGA-ZF-A9R7-01 1 109727676 109727676 C G KIAA1324 Missense_Mutation p.S321C 0.34 deleterious(0) probably_damaging(0.924) TCGA-ZF-A9R7-01 1 109735274 109735274 C G KIAA1324 Missense_Mutation p.I575M 0.32 deleterious(0) probably_damaging(0.972) TCGA-ZF-A9R7-01 1 110304378 110304378 G A EPS8L3 5'UTR 0.32 TCGA-ZF-A9R7-01 1 110593664 110593664 G A STRIP1 Nonsense_Mutation p.W681* 0.26 TCGA-ZF-A9R7-01 1 111147039 111147039 C G KCNA2 Silent p.A122A 0.14 TCGA-ZF-A9R7-01 1 11562905 11562905 C - PTCHD2 Frame_Shift_Del p.Q423Rfs*96 0.16 TCGA-ZF-A9R7-01 1 117576549 117576549 C T CD101 Silent p.F964F 0.22 TCGA-ZF-A9R7-01 1 1246357 1246357 G A PUSL1 Silent p.T256T 0.38 TCGA-ZF-A9R7-01 1 12711208 12711208 G A AADACL4 Missense_Mutation p.V79M 0.14 tolerated(0.5) benign(0.012) TCGA-ZF-A9R7-01 1 13475154 13475154 C G PRAMEF18 Silent p.L325L 0.33 TCGA-ZF-A9R7-01 1 145293386 145293386 C G NBPF10 5'UTR 0.05 TCGA-ZF-A9R7-01 1 148025826 148025826 C T NBPF14 Silent p.L8L 0.20 TCGA-ZF-A9R7-01 1 151131665 151131665 C T TNFAIP8L2 Silent p.F164F 0.17 TCGA-ZF-A9R7-01 1 152082303 152082303 C G TCHH Missense_Mutation p.K1130N 0.36 unknown(0) TCGA-ZF-A9R7-01 1 152082861 152082861 C G TCHH Silent p.L944L 0.33 TCGA-ZF-A9R7-01 1 152084601 152084601 C G TCHH Silent p.L364L 0.33 TCGA-ZF-A9R7-01 1 152084813 152084813 C G TCHH Missense_Mutation p.E294Q 0.40 unknown(0) TCGA-ZF-A9R7-01 1 152188170 152188170 G T HRNR Missense_Mutation p.P1979T 0.11 unknown(0) TCGA-ZF-A9R7-01 1 154897493 154897493 G C PMVK 3'UTR 0.29 TCGA-ZF-A9R7-01 1 155629412 155629412 G A YY1AP1 3'UTR 0.30 TCGA-ZF-A9R7-01 1 156020243 156020243 C G UBQLN4 Missense_Mutation p.E194Q 0.34 deleterious(0.02) probably_damaging(0.968) TCGA-ZF-A9R7-01 1 156020285 156020285 C G UBQLN4 Missense_Mutation p.E180Q 0.34 deleterious(0) probably_damaging(0.98) TCGA-ZF-A9R7-01 1 156212025 156212025 G A BGLAP Translation_Start_Site p.M1? 0.41 deleterious(0) unknown(0) TCGA-ZF-A9R7-01 1 156237957 156237957 C G SMG5 Missense_Mutation p.R286T 0.40 deleterious(0) possibly_damaging(0.782) TCGA-ZF-A9R7-01 1 156640349 156640349 C T NES Missense_Mutation p.E1211K 0.38 tolerated(0.29) benign(0.035) TCGA-ZF-A9R7-01 1 156641378 156641378 G C NES Missense_Mutation p.Q868E 0.16 deleterious(0.04) benign(0.039) TCGA-ZF-A9R7-01 1 156901818 156901818 C T LRRC71 Silent p.I480I 0.33 TCGA-ZF-A9R7-01 1 158061331 158061331 C T KIRREL Nonsense_Mutation p.Q486* 0.30 TCGA-ZF-A9R7-01 1 158325250 158325250 C G CD1E Silent p.L172L 0.34 TCGA-ZF-A9R7-01 1 160765992 160765992 G C LY9 Missense_Mutation p.K5N 0.14 deleterious(0.01) possibly_damaging(0.795) TCGA-ZF-A9R7-01 1 161203028 161203028 C T NR1I3 Silent p.L113L 0.09 TCGA-ZF-A9R7-01 1 165414189 165414189 C T RXRG 5'UTR 0.41 TCGA-ZF-A9R7-01 1 166891838 166891838 G A ILDR2 Silent p.F401F 0.10 TCGA-ZF-A9R7-01 1 167083028 167083028 G C DUSP27 Missense_Mutation p.Q64H 0.37 deleterious(0) possibly_damaging(0.867) TCGA-ZF-A9R7-01 1 16727058 16727058 C G SPATA21 Intron 0.27 TCGA-ZF-A9R7-01 1 169206874 169206874 G C NME7 Nonsense_Mutation p.S269* 0.24 TCGA-ZF-A9R7-01 1 172538243 172538243 G A SUCO Missense_Mutation p.E273K 0.27 deleterious(0) possibly_damaging(0.786) TCGA-ZF-A9R7-01 1 1737960 1737960 G A GNB1 Missense_Mutation p.S74L 0.21 deleterious(0.01) possibly_damaging(0.793) TCGA-ZF-A9R7-01 1 173878966 173878966 G A SERPINC1 Missense_Mutation p.R293W 0.40 deleterious(0.02) possibly_damaging(0.78) TCGA-ZF-A9R7-01 1 177030376 177030376 G A ASTN1 Silent p.I103I 0.09 TCGA-ZF-A9R7-01 1 17907088 17907088 C T ARHGEF10L 5'UTR 0.18 TCGA-ZF-A9R7-01 1 179089340 179089340 G A ABL2 Silent p.L344L 0.28 TCGA-ZF-A9R7-01 1 17958826 17958826 C G ARHGEF10L Nonsense_Mutation p.S532* 0.29 TCGA-ZF-A9R7-01 1 179966204 179966204 G A CEP350 Silent p.Q304Q 0.28 TCGA-ZF-A9R7-01 1 180063707 180063707 G A CEP350 Missense_Mutation p.D2823N 0.42 possibly_damaging(0.896) TCGA-ZF-A9R7-01 1 180885771 180885771 G A KIAA1614 Missense_Mutation p.E178K 0.11 tolerated(0.15) benign(0.027) TCGA-ZF-A9R7-01 1 181705515 181705515 A G CACNA1E Missense_Mutation p.T1123A 0.38 tolerated(0.2) benign(0.217) TCGA-ZF-A9R7-01 1 182025802 182025802 G C ZNF648 Missense_Mutation p.F448L 0.16 deleterious(0.01) probably_damaging(0.976) TCGA-ZF-A9R7-01 1 184042028 184042028 G C TSEN15 3'UTR 0.24 TCGA-ZF-A9R7-01 1 196887385 196887385 A T CFHR4 Missense_Mutation p.Q528L 0.10 tolerated(0.35) benign(0.046) TCGA-ZF-A9R7-01 1 198492553 198492553 C T ATP6V1G3 Missense_Mutation p.E109K 0.19 tolerated(0.06) benign(0.33) TCGA-ZF-A9R7-01 1 198505852 198505852 G C ATP6V1G3 Intron 0.39 TCGA-ZF-A9R7-01 1 201618437 201618437 C T NAV1 Missense_Mutation p.S214F 0.29 deleterious(0.02) benign(0.073) TCGA-ZF-A9R7-01 1 201984394 201984394 G C ELF3 Missense_Mutation p.K353N 0.38 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 1 203839141 203839141 C G SNRPE 3'UTR 0.17 TCGA-ZF-A9R7-01 1 205028799 205028799 C T CNTN2 Silent p.F262F 0.39 TCGA-ZF-A9R7-01 1 205764534 205764534 C G SLC41A1 Missense_Mutation p.G382A 0.23 deleterious(0) benign(0.334) TCGA-ZF-A9R7-01 1 207679266 207679266 G C CR1 Missense_Mutation p.E47Q 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.7) TCGA-ZF-A9R7-01 1 207758064 207758064 C A CR1 Silent p.P1791P 0.36 TCGA-ZF-A9R7-01 1 20945011 20945011 G T CDA Nonsense_Mutation p.E131* 0.22 TCGA-ZF-A9R7-01 1 211192488 211192488 G A KCNH1 Silent p.I223I 0.45 TCGA-ZF-A9R7-01 1 21551823 21551823 C T ECE1 Missense_Mutation p.V654M 0.30 tolerated(0.18) possibly_damaging(0.849) TCGA-ZF-A9R7-01 1 21771614 21771614 G A NBPF3 Nonsense_Mutation p.W12* 0.14 TCGA-ZF-A9R7-01 1 222892290 222892290 G A BROX Missense_Mutation p.R42Q 0.35 tolerated(0.07) benign(0.004) TCGA-ZF-A9R7-01 1 223402708 223402708 C T SUSD4 Silent p.V249V 0.30 TCGA-ZF-A9R7-01 1 227921578 227921578 C A SNAP47 5'Flank 0.37 TCGA-ZF-A9R7-01 1 228285296 228285296 G A ARF1 Silent p.L88L 0.25 TCGA-ZF-A9R7-01 1 229586337 229586337 C A NUP133 Nonsense_Mutation p.E1039* 0.12 TCGA-ZF-A9R7-01 1 229635538 229635538 C A NUP133 Nonsense_Mutation p.E181* 0.42 TCGA-ZF-A9R7-01 1 230778413 230778413 G A COG2 Missense_Mutation p.E21K 0.23 tolerated(0.09) probably_damaging(0.934) TCGA-ZF-A9R7-01 1 231830283 231830283 G C DISC1 Missense_Mutation p.R260P 0.38 tolerated(0.15) benign(0.027) TCGA-ZF-A9R7-01 1 232144764 232144764 C T DISC1 Missense_Mutation p.S759F 0.06 tolerated(0.46) benign(0.054) TCGA-ZF-A9R7-01 1 236389643 236389643 G A ERO1LB Silent p.V326V 0.12 TCGA-ZF-A9R7-01 1 240656456 240656456 G A GREM2 Missense_Mutation p.P107L 0.11 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 1 24125177 24125177 C T GALE Silent p.L55L 0.35 TCGA-ZF-A9R7-01 1 243858964 243858964 G A AKT3 Missense_Mutation p.S34L 0.38 deleterious(0.03) benign(0.314) TCGA-ZF-A9R7-01 1 247150185 247150185 C T ZNF695 3'UTR 0.33 TCGA-ZF-A9R7-01 1 248551800 248551800 G C OR2T6 Silent p.V297V 0.44 TCGA-ZF-A9R7-01 1 248844843 248844843 A G OR14I1 Missense_Mutation p.F255L 0.35 deleterious(0.04) benign(0.147) TCGA-ZF-A9R7-01 1 26570761 26570761 G A CEP85 Missense_Mutation p.D54N 0.20 deleterious(0.01) probably_damaging(0.937) TCGA-ZF-A9R7-01 1 26584195 26584195 G A CEP85 Silent p.L337L 0.16 TCGA-ZF-A9R7-01 1 26584196 26584196 A T CEP85 Nonsense_Mutation p.K338* 0.16 TCGA-ZF-A9R7-01 1 27089533 27089533 G C ARID1A Missense_Mutation p.G830A 0.24 unknown(0) TCGA-ZF-A9R7-01 1 27101300 27101300 C T ARID1A Nonsense_Mutation p.R1528* 0.24 TCGA-ZF-A9R7-01 1 29319902 29319902 G C EPB41 Missense_Mutation p.E177Q 0.22 tolerated(0.06) possibly_damaging(0.61) TCGA-ZF-A9R7-01 1 2939301 2939301 C G ACTRT2 Missense_Mutation p.L351V 0.15 tolerated(0.05) benign(0.344) TCGA-ZF-A9R7-01 1 32050798 32050798 G A TINAGL1 Missense_Mutation p.E302K 0.09 tolerated(0.61) benign(0.005) TCGA-ZF-A9R7-01 1 32829401 32829401 G C TSSK3 Missense_Mutation p.Q117H 0.32 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R7-01 1 32841956 32841956 C G BSDC1 Missense_Mutation p.E372Q 0.32 tolerated(0.1) benign(0.379) TCGA-ZF-A9R7-01 1 33138292 33138292 G A RBBP4 Missense_Mutation p.E365K 0.31 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 1 33276535 33276535 C G YARS Missense_Mutation p.D61H 0.34 tolerated(0.08) probably_damaging(1) TCGA-ZF-A9R7-01 1 33282873 33282873 C A YARS 5'UTR 0.39 TCGA-ZF-A9R7-01 1 33585748 33585748 G A ADC Missense_Mutation p.V450M 0.24 tolerated(0.1) benign(0.041) TCGA-ZF-A9R7-01 1 36181726 36181726 G A C1orf216 Missense_Mutation p.S66F 0.31 deleterious(0) probably_damaging(0.944) TCGA-ZF-A9R7-01 1 36306946 36306946 C G AGO4 Silent p.L635L 0.41 TCGA-ZF-A9R7-01 1 3673349 3673349 G A CCDC27 Silent p.K202K 0.35 TCGA-ZF-A9R7-01 1 41976601 41976601 C T HIVEP3 Missense_Mutation p.E2248K 0.42 benign(0.002) TCGA-ZF-A9R7-01 1 43103014 43103014 G C CCDC30 Missense_Mutation p.D535H 0.43 tolerated(0.09) benign(0.002) TCGA-ZF-A9R7-01 1 45267308 45267308 C T PLK3 Silent p.I150I 0.26 TCGA-ZF-A9R7-01 1 45977049 45977049 G C PRDX1 Missense_Mutation p.I184M 0.31 tolerated(0.24) probably_damaging(1) TCGA-ZF-A9R7-01 1 48865165 48865165 G A SPATA6 Missense_Mutation p.S213L 0.29 deleterious(0) probably_damaging(0.974) TCGA-ZF-A9R7-01 1 50661265 50661265 G C ELAVL4 Missense_Mutation p.D198H 0.30 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9R7-01 1 51425511 51425511 G A FAF1 5'UTR 0.16 TCGA-ZF-A9R7-01 1 52246873 52246873 C G OSBPL9 Missense_Mutation p.Q442E 0.18 tolerated(0.15) benign(0.411) TCGA-ZF-A9R7-01 1 53724124 53724124 C G LRP8 Silent p.L692L 0.32 TCGA-ZF-A9R7-01 1 53732281 53732281 C G LRP8 Missense_Mutation p.E431Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 1 55175632 55175632 G C MROH7 Missense_Mutation p.L1248F 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 1 62940941 62940941 G C DOCK7 Missense_Mutation p.P1984A 0.38 deleterious(0) probably_damaging(0.966) TCGA-ZF-A9R7-01 1 66723156 66723156 C G PDE4B Intron 0.39 TCGA-ZF-A9R7-01 1 6741080 6741080 C A DNAJC11 Silent p.L30L 0.35 TCGA-ZF-A9R7-01 1 76280745 76280745 G A MSH4 Missense_Mutation p.E247K 0.35 deleterious(0) possibly_damaging(0.714) TCGA-ZF-A9R7-01 1 76313930 76313930 C G MSH4 Missense_Mutation p.S400C 0.32 deleterious(0) probably_damaging(0.984) TCGA-ZF-A9R7-01 1 7792599 7792599 G C CAMTA1 Silent p.A1002A 0.37 TCGA-ZF-A9R7-01 1 79385976 79385976 G A ELTD1 Silent p.F451F 0.30 TCGA-ZF-A9R7-01 1 84417601 84417601 C T TTLL7 Missense_Mutation p.M28I 0.32 tolerated_low_confidence(1) benign(0) TCGA-ZF-A9R7-01 1 881822 881822 C T NOC2L Missense_Mutation p.R588H 0.17 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9R7-01 1 9188805 9188805 G A GPR157 Silent p.F94F 0.21 TCGA-ZF-A9R7-01 1 99225673 99225673 G C SNX7 Missense_Mutation p.E448Q 0.14 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-ZF-A9R7-01 20 13145442 13145442 G A SPTLC3 Silent p.L529L 0.23 TCGA-ZF-A9R7-01 20 13775549 13775549 C T NDUFAF5 Silent p.F147F 0.59 TCGA-ZF-A9R7-01 20 2444494 2444494 C G SNRPB Missense_Mutation p.G107R 0.21 tolerated(0.09) probably_damaging(0.919) TCGA-ZF-A9R7-01 20 24646031 24646031 C G SYNDIG1 Missense_Mutation p.S223C 0.63 deleterious(0) probably_damaging(0.965) TCGA-ZF-A9R7-01 20 25604545 25604545 C G NANP Missense_Mutation p.D14H 0.26 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 20 30193278 30193278 G A ID1 Missense_Mutation p.E30K 0.53 tolerated(0.12) probably_damaging(0.959) TCGA-ZF-A9R7-01 20 30193552 30193552 G C ID1 Missense_Mutation p.R121P 0.57 tolerated(0.48) possibly_damaging(0.754) TCGA-ZF-A9R7-01 20 30533523 30533523 C T PDRG1 3'UTR 0.22 TCGA-ZF-A9R7-01 20 3129477 3129477 G A FASTKD5 Silent p.F80F 0.25 TCGA-ZF-A9R7-01 20 32216236 32216236 G C CBFA2T2 Missense_Mutation p.D352H 0.27 tolerated(0.43) benign(0.223) TCGA-ZF-A9R7-01 20 32664968 32664968 G A RALY Missense_Mutation p.E265K 0.14 deleterious_low_confidence(0.04) benign(0.304) TCGA-ZF-A9R7-01 20 34087923 34087923 G C CEP250 Missense_Mutation p.D1275H 0.27 possibly_damaging(0.885) TCGA-ZF-A9R7-01 20 34778681 34778681 C G EPB41L1 Missense_Mutation p.S421C 0.26 deleterious(0) probably_damaging(0.971) TCGA-ZF-A9R7-01 20 35545130 35545130 C G SAMHD1 Missense_Mutation p.D353H 0.14 deleterious(0) benign(0.18) TCGA-ZF-A9R7-01 20 37353605 37353605 G A SLC32A1 Missense_Mutation p.E80K 0.21 tolerated(0.29) benign(0.009) TCGA-ZF-A9R7-01 20 39793642 39793642 C G PLCG1 Missense_Mutation p.F429L 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-A9R7-01 20 42635352 42635352 C G TOX2 Missense_Mutation p.Q111E 0.24 deleterious(0.04) probably_damaging(0.909) TCGA-ZF-A9R7-01 20 44577852 44577852 G T ZNF335 Silent p.V1286V 0.25 TCGA-ZF-A9R7-01 20 45355600 45355600 C T SLC2A10 Silent p.I462I 0.51 TCGA-ZF-A9R7-01 20 45355615 45355615 C T SLC2A10 Silent p.L467L 0.55 TCGA-ZF-A9R7-01 20 5905654 5905654 G C CHGB Missense_Mutation p.E665Q 0.28 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 20 60885766 60885766 G C LAMA5 Silent p.L3467L 0.39 TCGA-ZF-A9R7-01 20 62129093 62129093 G C EEF1A2 Missense_Mutation p.I8M 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.898) TCGA-ZF-A9R7-01 20 62701763 62701763 C T TCEA2 Missense_Mutation p.S223L 0.12 deleterious(0.04) possibly_damaging(0.595) TCGA-ZF-A9R7-01 20 826051 826051 C G FAM110A Missense_Mutation p.L202V 0.33 tolerated(0.35) probably_damaging(0.999) TCGA-ZF-A9R7-01 21 22656681 22656681 G C NCAM2 Missense_Mutation p.G100R 0.11 deleterious(0.05) probably_damaging(1) TCGA-ZF-A9R7-01 21 27945196 27945196 C T CYYR1 Missense_Mutation p.V22I 0.25 tolerated_low_confidence(0.3) benign(0.299) TCGA-ZF-A9R7-01 21 34725108 34725108 G T IFNAR1 Missense_Mutation p.L396F 0.34 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R7-01 21 34932413 34932413 C G SON Intron 0.16 TCGA-ZF-A9R7-01 21 37602916 37602916 G C DOPEY2 Missense_Mutation p.E612Q 0.17 tolerated(0.09) benign(0.014) TCGA-ZF-A9R7-01 21 38536402 38536402 C T TTC3 Missense_Mutation p.R1074W 0.13 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9R7-01 21 45113165 45113165 G C RRP1B Silent p.L726L 0.22 TCGA-ZF-A9R7-01 21 47648593 47648593 C T LSS Intron 0.25 TCGA-ZF-A9R7-01 21 47841934 47841934 G T PCNT Nonsense_Mutation p.E2359* 0.22 TCGA-ZF-A9R7-01 22 18305794 18305794 C T MICAL3 Missense_Mutation p.V1076M 0.33 benign(0.284) TCGA-ZF-A9R7-01 22 19347005 19347005 G C HIRA Silent p.V696V 0.33 TCGA-ZF-A9R7-01 22 24226015 24226015 G C SLC2A11 Silent p.L354L 0.15 TCGA-ZF-A9R7-01 22 24226515 24226515 G A SLC2A11 Missense_Mutation p.E404K 0.21 deleterious(0.02) probably_damaging(1) TCGA-ZF-A9R7-01 22 26423234 26423234 G C MYO18B Missense_Mutation p.D2432H 0.18 tolerated(0.12) benign(0.004) TCGA-ZF-A9R7-01 22 29627030 29627030 G C EMID1 Missense_Mutation p.E163Q 0.18 deleterious(0.05) benign(0.098) TCGA-ZF-A9R7-01 22 30186466 30186466 G A ASCC2 Silent p.A698A 0.12 TCGA-ZF-A9R7-01 22 31737399 31737399 C T PATZ1 Intron 0.34 TCGA-ZF-A9R7-01 22 37482402 37482402 G A TMPRSS6 Silent p.I307I 0.70 TCGA-ZF-A9R7-01 22 39770461 39770461 C T SYNGR1 Silent p.L80L 0.32 TCGA-ZF-A9R7-01 22 41751506 41751506 G C ZC3H7B Missense_Mutation p.D690H 0.21 deleterious(0.03) possibly_damaging(0.694) TCGA-ZF-A9R7-01 22 41752065 41752065 G C ZC3H7B Missense_Mutation p.K794N 0.27 tolerated(1) benign(0.036) TCGA-ZF-A9R7-01 22 41922179 41922179 G A POLR3H 3'UTR 0.38 TCGA-ZF-A9R7-01 22 42385679 42385679 C T SEPT3 Silent p.F220F 0.36 TCGA-ZF-A9R7-01 22 42392892 42392892 C G SEPT3 Intron 0.42 TCGA-ZF-A9R7-01 22 42393080 42393080 C G SEPT3 3'UTR 0.55 TCGA-ZF-A9R7-01 22 42962318 42962318 C A SERHL2 Missense_Mutation p.L208M 0.41 tolerated(0.07) possibly_damaging(0.77) TCGA-ZF-A9R7-01 22 43569763 43569763 C G TTLL12 Missense_Mutation p.K433N 0.26 tolerated(1) benign(0.002) TCGA-ZF-A9R7-01 22 44285326 44285326 G A PNPLA5 Silent p.I195I 0.25 TCGA-ZF-A9R7-01 22 44395509 44395509 C G PARVB Nonsense_Mutation p.S56* 0.14 TCGA-ZF-A9R7-01 22 50319169 50319169 G A CRELD2 Missense_Mutation p.E374K 0.34 tolerated(0.07) probably_damaging(0.932) TCGA-ZF-A9R7-01 2 103124666 103124666 C G SLC9A4 Missense_Mutation p.L443V 0.22 tolerated(0.3) benign(0.065) TCGA-ZF-A9R7-01 2 103322387 103322387 C G SLC9A2 Missense_Mutation p.S687C 0.31 tolerated(0.07) benign(0.376) TCGA-ZF-A9R7-01 2 118578755 118578755 C T DDX18 Missense_Mutation p.S178L 0.29 tolerated(0.12) benign(0.026) TCGA-ZF-A9R7-01 2 128377761 128377761 G C MYO7B Intron 0.50 TCGA-ZF-A9R7-01 2 128522769 128522769 G A WDR33 Silent p.F151F 0.30 TCGA-ZF-A9R7-01 2 131102277 131102277 G C IMP4 Missense_Mutation p.G63A 0.22 tolerated(0.56) benign(0.005) TCGA-ZF-A9R7-01 2 136362421 136362421 G A R3HDM1 Silent p.R2R 0.29 TCGA-ZF-A9R7-01 2 136872570 136872570 T C CXCR4 Missense_Mutation p.K314E 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-ZF-A9R7-01 2 139318471 139318471 G C SPOPL Missense_Mutation p.D271H 0.27 tolerated(0.1) benign(0.05) TCGA-ZF-A9R7-01 2 144899508 144899508 G C GTDC1 Missense_Mutation p.S154R 0.23 tolerated(0.26) benign(0.014) TCGA-ZF-A9R7-01 2 152348672 152348672 G A NEB Nonsense_Mutation p.Q8333* 0.30 TCGA-ZF-A9R7-01 2 152369279 152369279 G C NEB Missense_Mutation p.H7772D 0.17 probably_damaging(0.989) TCGA-ZF-A9R7-01 2 152426865 152426865 G A NEB Silent p.Y5720Y 0.21 TCGA-ZF-A9R7-01 2 165809275 165809275 C G SLC38A11 Translation_Start_Site p.M1? 0.40 tolerated(0.32) benign(0.029) TCGA-ZF-A9R7-01 2 167134678 167134678 C G SCN9A Missense_Mutation p.G819A 0.28 deleterious(0) possibly_damaging(0.886) TCGA-ZF-A9R7-01 2 168108151 168108151 G A XIRP2 Missense_Mutation p.E3417K 0.35 possibly_damaging(0.548) TCGA-ZF-A9R7-01 2 173337537 173337537 C T ITGA6 Intron 0.36 TCGA-ZF-A9R7-01 2 174125822 174125822 G T MLTK Missense_Mutation p.G503V 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 2 174125838 174125838 G C MLTK Missense_Mutation p.Q508H 0.24 tolerated(0.07) possibly_damaging(0.789) TCGA-ZF-A9R7-01 2 174125863 174125863 G A MLTK Missense_Mutation p.E517K 0.16 deleterious(0.04) probably_damaging(0.958) TCGA-ZF-A9R7-01 2 178762916 178762916 C G PDE11A Missense_Mutation p.E391Q 0.35 tolerated(0.07) probably_damaging(0.968) TCGA-ZF-A9R7-01 2 179427150 179427150 C G TTN Missense_Mutation p.Q27903H 0.40 TCGA-ZF-A9R7-01 2 179427540 179427540 C G TTN Missense_Mutation p.L27773F 0.25 TCGA-ZF-A9R7-01 2 179485146 179485146 C T TTN Missense_Mutation p.E15368K 0.30 TCGA-ZF-A9R7-01 2 179989213 179989213 G C SESTD1 Missense_Mutation p.L349V 0.33 tolerated(1) benign(0.002) TCGA-ZF-A9R7-01 2 183621176 183621176 G C DNAJC10 Missense_Mutation p.E597Q 0.36 tolerated(0.05) probably_damaging(0.996) TCGA-ZF-A9R7-01 2 185803091 185803091 G A ZNF804A Missense_Mutation p.E990K 0.12 deleterious(0) probably_damaging(0.956) TCGA-ZF-A9R7-01 2 188211069 188211069 A G CALCRL Missense_Mutation p.F410L 0.27 tolerated(0.45) benign(0.003) TCGA-ZF-A9R7-01 2 189855742 189855742 C T COL3A1 Nonsense_Mutation p.R271* 0.22 TCGA-ZF-A9R7-01 2 189871699 189871699 G A COL3A1 Missense_Mutation p.G1080S 0.14 probably_damaging(0.999) TCGA-ZF-A9R7-01 2 189899696 189899696 G C COL5A2 Missense_Mutation p.I1433M 0.09 unknown(0) TCGA-ZF-A9R7-01 2 192711645 192711645 C G SDPR Missense_Mutation p.E3Q 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 2 198570649 198570649 G A MARS2 Missense_Mutation p.E174K 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 2 202340361 202340361 G C STRADB Missense_Mutation p.L148F 0.34 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R7-01 2 203817303 203817303 G A CARF Missense_Mutation p.E110K 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 2 203820396 203820396 G T CARF Splice_Site p.X186_splice 0.23 TCGA-ZF-A9R7-01 2 20507824 20507824 C T PUM2 Silent p.Q266Q 0.24 TCGA-ZF-A9R7-01 2 20508191 20508191 C T PUM2 Missense_Mutation p.D225N 0.31 deleterious_low_confidence(0.04) benign(0.433) TCGA-ZF-A9R7-01 2 20508206 20508206 C T PUM2 Missense_Mutation p.E220K 0.28 deleterious_low_confidence(0.02) benign(0.138) TCGA-ZF-A9R7-01 2 206023476 206023476 C A PARD3B Intron 0.30 TCGA-ZF-A9R7-01 2 207162057 207162057 G C ZDBF2 Missense_Mutation p.D50H 0.28 deleterious(0) possibly_damaging(0.861) TCGA-ZF-A9R7-01 2 207172435 207172435 G A ZDBF2 Silent p.L1061L 0.19 TCGA-ZF-A9R7-01 2 21246547 21246547 C T APOB Silent p.R818R 0.25 TCGA-ZF-A9R7-01 2 21247964 21247964 C T APOB Silent p.E759E 0.28 TCGA-ZF-A9R7-01 2 21249665 21249665 C G APOB Missense_Mutation p.E747Q 0.24 probably_damaging(0.998) TCGA-ZF-A9R7-01 2 215813322 215813322 C G ABCA12 Missense_Mutation p.E2368Q 0.24 tolerated(0.51) benign(0.405) TCGA-ZF-A9R7-01 2 216236649 216236649 C T FN1 Missense_Mutation p.D2233N 0.26 tolerated(0.49) benign(0.419) TCGA-ZF-A9R7-01 2 218683208 218683208 G A TNS1 Nonsense_Mutation p.Q1179* 0.28 TCGA-ZF-A9R7-01 2 219131678 219131678 G A AAMP Silent p.F142F 0.16 TCGA-ZF-A9R7-01 2 228771019 228771019 C G DAW1 Missense_Mutation p.L275V 0.33 tolerated(0.07) benign(0.258) TCGA-ZF-A9R7-01 2 231177533 231177533 C G SP140 3'UTR 0.42 TCGA-ZF-A9R7-01 2 234402138 234402138 C G USP40 Missense_Mutation p.E961D 0.34 tolerated(0.41) benign(0.211) TCGA-ZF-A9R7-01 2 239242647 239242647 C T TRAF3IP1 Missense_Mutation p.S345L 0.28 deleterious(0.05) benign(0.194) TCGA-ZF-A9R7-01 2 24236213 24236213 T G MFSD2B Missense_Mutation p.V52G 0.29 deleterious(0) possibly_damaging(0.597) TCGA-ZF-A9R7-01 2 24521593 24521593 C A ITSN2 Nonsense_Mutation p.E479* 0.36 TCGA-ZF-A9R7-01 2 26427023 26427023 G A HADHA Silent p.I376I 0.29 TCGA-ZF-A9R7-01 2 27438518 27438518 C G ATRAID Silent p.V183V 0.26 TCGA-ZF-A9R7-01 2 27663526 27663526 C G NRBP1 Missense_Mutation p.Q384E 0.15 tolerated(0.75) probably_damaging(0.977) TCGA-ZF-A9R7-01 2 27802816 27802816 G A C2orf16 Missense_Mutation p.R1126Q 0.32 tolerated(0.15) possibly_damaging(0.724) TCGA-ZF-A9R7-01 2 30790940 30790940 C G LCLAT1 Missense_Mutation p.R214G 0.21 deleterious(0.01) probably_damaging(0.929) TCGA-ZF-A9R7-01 2 30790973 30790973 C T LCLAT1 Nonsense_Mutation p.Q225* 0.19 TCGA-ZF-A9R7-01 2 31621561 31621561 C G XDH Missense_Mutation p.R104T 0.31 deleterious(0) benign(0.434) TCGA-ZF-A9R7-01 2 33172768 33172768 C T LTBP1 Missense_Mutation p.P126L 0.29 tolerated_low_confidence(0.07) benign(0.018) TCGA-ZF-A9R7-01 2 33952636 33952636 G A AC009499.1 Intron 0.33 TCGA-ZF-A9R7-01 2 37227882 37227882 C G HEATR5B Missense_Mutation p.D1798H 0.30 tolerated(0.1) possibly_damaging(0.601) TCGA-ZF-A9R7-01 2 42543133 42543133 C T EML4 Silent p.L667L 0.30 TCGA-ZF-A9R7-01 2 42543170 42543170 C T EML4 Missense_Mutation p.S679F 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-ZF-A9R7-01 2 42578301 42578301 G A COX7A2L 3'UTR 0.59 TCGA-ZF-A9R7-01 2 47601063 47601063 G C EPCAM Missense_Mutation p.E101Q 0.31 tolerated(0.18) possibly_damaging(0.702) TCGA-ZF-A9R7-01 2 55463873 55463873 C G MTIF2 Missense_Mutation p.D699H 0.24 tolerated(0.09) benign(0.117) TCGA-ZF-A9R7-01 2 55555447 55555447 G A CCDC88A Missense_Mutation p.R993C 0.26 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 2 55863489 55863489 C G PNPT1 Missense_Mutation p.M745I 0.30 tolerated(0.26) benign(0.057) TCGA-ZF-A9R7-01 2 61310373 61310373 C G KIAA1841 Missense_Mutation p.L272V 0.31 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 2 61438989 61438989 C G USP34 Missense_Mutation p.D2920H 0.33 deleterious(0.04) possibly_damaging(0.459) TCGA-ZF-A9R7-01 2 61633172 61633172 G C USP34 Missense_Mutation p.Q75E 0.24 tolerated(0.23) benign(0.011) TCGA-ZF-A9R7-01 2 64321919 64321919 G A PELI1 Missense_Mutation p.H392Y 0.31 deleterious(0.01) possibly_damaging(0.904) TCGA-ZF-A9R7-01 2 64321928 64321928 G A PELI1 Missense_Mutation p.H389Y 0.35 deleterious(0.01) possibly_damaging(0.811) TCGA-ZF-A9R7-01 2 64322060 64322060 G T PELI1 Missense_Mutation p.L345M 0.29 deleterious(0.02) probably_damaging(0.927) TCGA-ZF-A9R7-01 2 64863099 64863099 C G SERTAD2 Missense_Mutation p.E303Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R7-01 2 70315647 70315647 G T PCBP1 Missense_Mutation p.A258S 0.33 tolerated(0.87) benign(0.001) TCGA-ZF-A9R7-01 2 73474901 73474901 G A CCT7 Silent p.L210L 0.40 TCGA-ZF-A9R7-01 2 74783531 74783531 G T DOK1 Nonsense_Mutation p.E246* 0.09 TCGA-ZF-A9R7-01 2 85843553 85843553 G A USP39 Missense_Mutation p.D79N 0.38 deleterious(0.02) benign(0.007) TCGA-ZF-A9R7-01 2 8872079 8872079 G A KIDINS220 Missense_Mutation p.L1363F 0.37 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-ZF-A9R7-01 2 9540151 9540151 G C ASAP2 Splice_Site p.X895_splice 0.41 TCGA-ZF-A9R7-01 3 100964768 100964768 G C IMPG2 Missense_Mutation p.S474C 0.14 deleterious(0.01) possibly_damaging(0.847) TCGA-ZF-A9R7-01 3 101212742 101212742 G C SENP7 Nonsense_Mutation p.S54* 0.31 TCGA-ZF-A9R7-01 3 10312526 10312526 G C TATDN2 Missense_Mutation p.E554Q 0.34 deleterious(0.01) probably_damaging(0.927) TCGA-ZF-A9R7-01 3 105464816 105464816 G A CBLB Missense_Mutation p.L264F 0.28 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 3 105464872 105464872 G C CBLB Missense_Mutation p.S245C 0.29 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 3 108076972 108076972 G C HHLA2 Missense_Mutation p.E323Q 0.28 tolerated(0.15) possibly_damaging(0.565) TCGA-ZF-A9R7-01 3 113377872 113377872 G A KIAA2018 Missense_Mutation p.A886V 0.27 benign(0.005) TCGA-ZF-A9R7-01 3 119121138 119121138 G A ARHGAP31 Silent p.P513P 0.13 TCGA-ZF-A9R7-01 3 120121766 120121766 C G FSTL1 Splice_Site p.X232_splice 0.33 TCGA-ZF-A9R7-01 3 121435584 121435584 C A GOLGB1 Missense_Mutation p.D430Y 0.29 possibly_damaging(0.905) TCGA-ZF-A9R7-01 3 122287474 122287474 G A DTX3L Missense_Mutation p.D180N 0.24 deleterious(0.01) probably_damaging(0.963) TCGA-ZF-A9R7-01 3 122287833 122287833 G T DTX3L Missense_Mutation p.Q299H 0.26 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R7-01 3 122288058 122288058 G C DTX3L Missense_Mutation p.M374I 0.35 deleterious(0.03) benign(0.133) TCGA-ZF-A9R7-01 3 123333068 123333068 C T MYLK Missense_Mutation p.D1877N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9R7-01 3 123382949 123382949 C T MYLK Intron 0.15 TCGA-ZF-A9R7-01 3 130300620 130300620 G C COL6A6 Missense_Mutation p.E1255Q 0.39 tolerated(1) probably_damaging(0.997) TCGA-ZF-A9R7-01 3 133525492 133525492 G C SRPRB Missense_Mutation p.R65T 0.27 tolerated(0.07) benign(0.088) TCGA-ZF-A9R7-01 3 136045706 136045706 C G PCCB Missense_Mutation p.F404L 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZF-A9R7-01 3 138374305 138374305 C T PIK3CB Missense_Mutation p.E1047K 0.29 deleterious(0) benign(0.263) TCGA-ZF-A9R7-01 3 1394021 1394021 G C CNTN6 Missense_Mutation p.E460Q 0.28 tolerated(0.21) possibly_damaging(0.474) TCGA-ZF-A9R7-01 3 140397005 140397005 G C TRIM42 5'UTR 0.26 TCGA-ZF-A9R7-01 3 14207074 14207074 G C XPC Silent p.L211L 0.28 TCGA-ZF-A9R7-01 3 14549066 14549066 C G GRIP2 Intron 0.25 TCGA-ZF-A9R7-01 3 15495391 15495391 C G COLQ Missense_Mutation p.E415Q 0.33 deleterious(0) unknown(0) TCGA-ZF-A9R7-01 3 155838448 155838448 G A KCNAB1 Silent p.E16E 0.31 TCGA-ZF-A9R7-01 3 157839929 157839929 C T RSRC1 Silent p.S12S 0.13 TCGA-ZF-A9R7-01 3 157920947 157920947 G C RSRC1 Missense_Mutation p.R136T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-ZF-A9R7-01 3 159604002 159604002 G C IQCJ-SCHIP1 Missense_Mutation p.Q371H 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-ZF-A9R7-01 3 167250742 167250742 G A WDR49 Silent p.L308L 0.42 TCGA-ZF-A9R7-01 3 169694737 169694737 C T SEC62 Missense_Mutation p.S50L 0.37 deleterious(0.03) possibly_damaging(0.728) TCGA-ZF-A9R7-01 3 183695342 183695342 G C ABCC5 Missense_Mutation p.S456C 0.17 deleterious(0) possibly_damaging(0.865) TCGA-ZF-A9R7-01 3 183995832 183995832 G A ECE2 Missense_Mutation p.E318K 0.29 tolerated(0.45) benign(0.044) TCGA-ZF-A9R7-01 3 184084567 184084567 C G POLR2H Missense_Mutation p.S105C 0.39 deleterious(0.02) possibly_damaging(0.586) TCGA-ZF-A9R7-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.41 deleterious_low_confidence(0.02) benign(0.001) TCGA-ZF-A9R7-01 3 185375096 185375096 C T IGF2BP2 Missense_Mutation p.R455K 0.29 tolerated(0.08) benign(0.061) TCGA-ZF-A9R7-01 3 186915459 186915459 G C RTP1 Missense_Mutation p.E52D 0.28 deleterious(0.03) possibly_damaging(0.636) TCGA-ZF-A9R7-01 3 24018854 24018854 C T NR1D2 Nonsense_Mutation p.R562* 0.27 TCGA-ZF-A9R7-01 3 35835331 35835331 C G ARPP21 Missense_Mutation p.Q775E 0.32 deleterious(0) probably_damaging(0.971) TCGA-ZF-A9R7-01 3 38408354 38408354 C G XYLB Nonsense_Mutation p.S188* 0.28 TCGA-ZF-A9R7-01 3 39229889 39229889 C G XIRP1 Missense_Mutation p.E350Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 3 39230279 39230279 C G XIRP1 Missense_Mutation p.E220Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 3 430940 430940 G C CHL1 Missense_Mutation p.L751F 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 3 44762639 44762639 G C ZNF502 Missense_Mutation p.L110F 0.26 tolerated(0.14) probably_damaging(0.986) TCGA-ZF-A9R7-01 3 44816927 44816927 C G KIF15 Missense_Mutation p.Q82E 0.31 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R7-01 3 47125551 47125551 C G SETD2 Missense_Mutation p.E1907Q 0.13 deleterious(0.02) possibly_damaging(0.697) TCGA-ZF-A9R7-01 3 48612912 48612912 G A COL7A1 Nonsense_Mutation p.Q2014* 0.35 TCGA-ZF-A9R7-01 3 48732441 48732441 G A IP6K2 Intron 0.29 TCGA-ZF-A9R7-01 3 48820492 48820492 C G PRKAR2A Missense_Mutation p.E157Q 0.13 deleterious(0.02) possibly_damaging(0.865) TCGA-ZF-A9R7-01 3 50685381 50685381 C G MAPKAPK3 Missense_Mutation p.I351M 0.29 deleterious(0.02) benign(0.431) TCGA-ZF-A9R7-01 3 50685414 50685414 C G MAPKAPK3 Silent p.L362L 0.31 TCGA-ZF-A9R7-01 3 51315045 51315045 G A DOCK3 Missense_Mutation p.D895N 0.48 tolerated(0.35) benign(0.002) TCGA-ZF-A9R7-01 3 52475406 52475406 G A SEMA3G Silent p.A229A 0.28 TCGA-ZF-A9R7-01 3 57543266 57543266 G A PDE12 Missense_Mutation p.R387Q 0.43 tolerated(0.07) probably_damaging(0.953) TCGA-ZF-A9R7-01 3 58629415 58629415 C T FAM3D Missense_Mutation p.R99K 0.15 deleterious(0.02) probably_damaging(0.919) TCGA-ZF-A9R7-01 3 62358488 62358488 C T FEZF2 Missense_Mutation p.G19E 0.33 deleterious(0) possibly_damaging(0.694) TCGA-ZF-A9R7-01 3 69915496 69915496 C T MITF Intron 0.11 TCGA-ZF-A9R7-01 3 69998236 69998236 G A MITF Missense_Mutation p.G266E 0.24 deleterious(0.05) possibly_damaging(0.844) TCGA-ZF-A9R7-01 3 72427524 72427524 C T RYBP 3'UTR 0.18 TCGA-ZF-A9R7-01 3 7620229 7620229 G A GRM7 Missense_Mutation p.E546K 0.29 tolerated(0.41) possibly_damaging(0.829) TCGA-ZF-A9R7-01 3 88188699 88188699 C T ZNF654 Missense_Mutation p.S80L 0.32 deleterious(0.04) benign(0.424) TCGA-ZF-A9R7-01 3 89391234 89391234 C G EPHA3 Missense_Mutation p.Q434E 0.27 deleterious(0) probably_damaging(0.953) TCGA-ZF-A9R7-01 3 97983323 97983323 C G OR5H6 Missense_Mutation p.I65M 0.27 deleterious(0) probably_damaging(0.954) TCGA-ZF-A9R7-01 3 9799522 9799522 G C CAMK1 Missense_Mutation p.F307L 0.40 deleterious(0.02) probably_damaging(0.986) TCGA-ZF-A9R7-01 3 9845538 9845538 C G ARPC4 Missense_Mutation p.I133M 0.35 deleterious(0.01) probably_damaging(0.919) TCGA-ZF-A9R7-01 4 114473230 114473230 C T CAMK2D Missense_Mutation p.E100K 0.37 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-ZF-A9R7-01 4 119952798 119952798 G C SYNPO2 Missense_Mutation p.K956N 0.30 deleterious(0) probably_damaging(0.986) TCGA-ZF-A9R7-01 4 126372607 126372607 C A FAT4 Nonsense_Mutation p.S3479* 0.40 TCGA-ZF-A9R7-01 4 126373365 126373365 C T FAT4 Missense_Mutation p.H3732Y 0.17 possibly_damaging(0.521) TCGA-ZF-A9R7-01 4 153250865 153250865 C G FBXW7 Missense_Mutation p.D399H 0.43 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 4 155219599 155219599 G A DCHS2 Missense_Mutation p.S1501L 0.15 tolerated(0.32) benign(0.211) TCGA-ZF-A9R7-01 4 156638326 156638326 G A GUCY1A3 Missense_Mutation p.D530N 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 4 158065100 158065100 G A GLRB Missense_Mutation p.R298K 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-ZF-A9R7-01 4 162306914 162306914 C A FSTL5 Missense_Mutation p.W843C 0.25 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9R7-01 4 165890923 165890923 C A TRIM61 Missense_Mutation p.A78S 0.23 deleterious(0) possibly_damaging(0.527) TCGA-ZF-A9R7-01 4 174448515 174448515 C G HAND2 Missense_Mutation p.L189F 0.24 tolerated(0.33) benign(0.202) TCGA-ZF-A9R7-01 4 17513587 17513587 G A QDPR Missense_Mutation p.R31W 0.20 deleterious(0) probably_damaging(0.932) TCGA-ZF-A9R7-01 4 187197423 187197423 G A F11 Missense_Mutation p.D212N 0.11 tolerated(0.12) probably_damaging(0.983) TCGA-ZF-A9R7-01 4 3487290 3487290 C T DOK7 Missense_Mutation p.S186L 0.12 deleterious(0.03) probably_damaging(0.94) TCGA-ZF-A9R7-01 4 42145615 42145615 G A BEND4 Missense_Mutation p.S295F 0.50 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-ZF-A9R7-01 4 46263969 46263969 C T GABRA2 Missense_Mutation p.D345N 0.21 tolerated(0.1) probably_damaging(0.976) TCGA-ZF-A9R7-01 4 47939152 47939152 G C CNGA1 Silent p.V522V 0.18 TCGA-ZF-A9R7-01 4 5016863 5016863 C G CYTL1 3'UTR 0.22 TCGA-ZF-A9R7-01 4 55968538 55968538 C G KDR Missense_Mutation p.E709Q 0.45 tolerated(0.07) probably_damaging(0.997) TCGA-ZF-A9R7-01 4 57340298 57340298 G A SRP72 Missense_Mutation p.E145K 0.40 tolerated(0.06) benign(0.275) TCGA-ZF-A9R7-01 4 57840116 57840116 C G NOA1 Missense_Mutation p.R406T 0.28 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 4 57852590 57852590 C T POLR2B Silent p.I30I 0.32 TCGA-ZF-A9R7-01 4 57889539 57889539 G C POLR2B Missense_Mutation p.L853F 0.18 tolerated(0.06) possibly_damaging(0.853) TCGA-ZF-A9R7-01 4 65145784 65145784 C T TECRL 3'UTR 0.14 TCGA-ZF-A9R7-01 4 66467434 66467434 C T EPHA5 Missense_Mutation p.E279K 0.12 deleterious(0) probably_damaging(0.955) TCGA-ZF-A9R7-01 4 70361046 70361046 G A UGT2B4 Silent p.Y178Y 0.11 TCGA-ZF-A9R7-01 4 77691982 77691982 C G SHROOM3 Silent p.L1851L 0.15 TCGA-ZF-A9R7-01 4 79362367 79362367 G C FRAS1 Missense_Mutation p.D1861H 0.39 probably_damaging(0.952) TCGA-ZF-A9R7-01 4 88258413 88258413 C G HSD17B11 3'UTR 0.10 TCGA-ZF-A9R7-01 4 96127806 96127806 C G UNC5C Missense_Mutation p.K625N 0.24 deleterious(0) probably_damaging(0.982) TCGA-ZF-A9R7-01 4 96137275 96137275 C T UNC5C Missense_Mutation p.R578K 0.47 tolerated(0.18) benign(0.105) TCGA-ZF-A9R7-01 5 112849586 112849586 C T YTHDC2 5'UTR 0.50 TCGA-ZF-A9R7-01 5 114548043 114548043 T C PGGT1B 3'UTR 0.71 TCGA-ZF-A9R7-01 5 127645795 127645795 C G FBN2 Missense_Mutation p.D1694H 0.19 deleterious(0) probably_damaging(0.973) TCGA-ZF-A9R7-01 5 140174823 140174823 C T PCDHA2 Missense_Mutation p.R92W 0.54 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-ZF-A9R7-01 5 140222420 140222420 C G PCDHA8 Missense_Mutation p.S505W 0.59 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-ZF-A9R7-01 5 140475034 140475034 G C PCDHB2 Silent p.G220G 0.13 TCGA-ZF-A9R7-01 5 140870771 140870771 C T PCDHGC5 Missense_Mutation p.S655L 0.21 tolerated(0.19) benign(0.061) TCGA-ZF-A9R7-01 5 140870916 140870916 C G PCDHGC5 Silent p.L703L 0.19 TCGA-ZF-A9R7-01 5 141335988 141335988 G C PCDH12 Missense_Mutation p.L477V 0.67 tolerated(0.5) benign(0.42) TCGA-ZF-A9R7-01 5 14399102 14399102 G C TRIO Missense_Mutation p.E1513Q 0.39 probably_damaging(0.987) TCGA-ZF-A9R7-01 5 148632322 148632322 C G ABLIM3 Missense_Mutation p.I620M 0.40 deleterious(0.01) probably_damaging(0.91) TCGA-ZF-A9R7-01 5 149751792 149751792 G A TCOF1 Missense_Mutation p.R288Q 0.64 deleterious(0.03) benign(0.004) TCGA-ZF-A9R7-01 5 153056624 153056624 G A GRIA1 Missense_Mutation p.R321K 0.62 tolerated(0.77) possibly_damaging(0.475) TCGA-ZF-A9R7-01 5 159507713 159507713 C T PWWP2A Silent p.L538L 0.75 TCGA-ZF-A9R7-01 5 168187935 168187935 C T SLIT3 Silent p.L539L 0.59 TCGA-ZF-A9R7-01 5 178540947 178540947 G A ADAMTS2 Missense_Mutation p.P1186L 0.56 tolerated_low_confidence(0.78) benign(0.001) TCGA-ZF-A9R7-01 5 179228820 179228820 C G MGAT4B Missense_Mutation p.D98H 0.47 deleterious(0) possibly_damaging(0.553) TCGA-ZF-A9R7-01 5 311422 311422 G C PDCD6 Missense_Mutation p.D128H 0.31 deleterious(0.04) benign(0.082) TCGA-ZF-A9R7-01 5 41794150 41794150 C G OXCT1 Silent p.A401A 0.24 TCGA-ZF-A9R7-01 5 43040160 43040160 C G ANXA2R 5'UTR 0.11 TCGA-ZF-A9R7-01 5 54527138 54527138 C A CCNO 3'UTR 0.20 TCGA-ZF-A9R7-01 5 54593189 54593189 C G DHX29 Missense_Mutation p.G100A 0.44 tolerated_low_confidence(0.31) benign(0.114) TCGA-ZF-A9R7-01 5 80608381 80608381 G A ZCCHC9 Missense_Mutation p.G239D 0.59 deleterious(0.04) benign(0.411) TCGA-ZF-A9R7-01 5 82500738 82500738 C T XRCC4 Missense_Mutation p.S248L 0.50 deleterious(0.01) benign(0.093) TCGA-ZF-A9R7-01 5 896858 896858 G C TRIP13 Missense_Mutation p.E113Q 0.27 tolerated(0.15) benign(0.024) TCGA-ZF-A9R7-01 5 9224898 9224898 C T SEMA5A Silent p.E178E 0.49 TCGA-ZF-A9R7-01 6 101098466 101098466 C T ASCC3 Missense_Mutation p.R1067Q 0.28 tolerated(0.08) possibly_damaging(0.49) TCGA-ZF-A9R7-01 6 105573444 105573444 C T BVES Missense_Mutation p.E121K 0.23 tolerated(0.07) benign(0.008) TCGA-ZF-A9R7-01 6 10874786 10874786 C G GCM2 Missense_Mutation p.E321D 0.14 tolerated(0.48) benign(0.006) TCGA-ZF-A9R7-01 6 108984779 108984779 G A FOXO3 Missense_Mutation p.R248Q 0.14 deleterious(0) probably_damaging(0.97) TCGA-ZF-A9R7-01 6 108985224 108985224 C T FOXO3 Silent p.L396L 0.26 TCGA-ZF-A9R7-01 6 108985225 108985225 C T FOXO3 Missense_Mutation p.P397S 0.26 tolerated(0.75) benign(0.01) TCGA-ZF-A9R7-01 6 108985271 108985271 C G FOXO3 Missense_Mutation p.S412C 0.30 deleterious(0.01) possibly_damaging(0.894) TCGA-ZF-A9R7-01 6 108985623 108985623 C T FOXO3 Silent p.V529V 0.36 TCGA-ZF-A9R7-01 6 108985799 108985799 C G FOXO3 Nonsense_Mutation p.S588* 0.56 TCGA-ZF-A9R7-01 6 109802545 109802545 C T ZBTB24 Missense_Mutation p.E229K 0.22 tolerated(0.72) benign(0.097) TCGA-ZF-A9R7-01 6 111213515 111213515 C T AMD1 Silent p.L162L 0.24 TCGA-ZF-A9R7-01 6 111694276 111694276 G C REV3L Missense_Mutation p.S1761C 0.26 deleterious(0.03) possibly_damaging(0.503) TCGA-ZF-A9R7-01 6 111696185 111696185 G C REV3L Missense_Mutation p.P1125A 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 6 119252668 119252668 C T MCM9 Missense_Mutation p.R74Q 0.34 tolerated(0.13) benign(0.051) TCGA-ZF-A9R7-01 6 119510944 119510944 G A MAN1A1 Silent p.F477F 0.29 TCGA-ZF-A9R7-01 6 121401953 121401953 C T TBC1D32 Silent p.L1246L 0.41 TCGA-ZF-A9R7-01 6 121433760 121433760 G A TBC1D32 Missense_Mutation p.S1072F 0.31 deleterious(0) possibly_damaging(0.887) TCGA-ZF-A9R7-01 6 126210086 126210086 G A NCOA7 Missense_Mutation p.D296N 0.28 deleterious(0) probably_damaging(0.94) TCGA-ZF-A9R7-01 6 131191267 131191267 C G EPB41L2 Splice_Site p.X682_splice 0.29 TCGA-ZF-A9R7-01 6 132967038 132967038 C T TAAR1 Silent p.L35L 0.36 TCGA-ZF-A9R7-01 6 133802665 133802665 G A EYA4 Silent p.R345R 0.27 TCGA-ZF-A9R7-01 6 138198296 138198296 G A TNFAIP3 Missense_Mutation p.E297K 0.37 tolerated(0.79) benign(0.002) TCGA-ZF-A9R7-01 6 149901794 149901794 G T GINM1 Nonsense_Mutation p.E218* 0.30 TCGA-ZF-A9R7-01 6 150057633 150057633 G C NUP43 Missense_Mutation p.S255C 0.33 deleterious(0.05) benign(0.078) TCGA-ZF-A9R7-01 6 150094290 150094290 C T PCMT1 Silent p.I117I 0.23 TCGA-ZF-A9R7-01 6 150094297 150094297 C G PCMT1 Missense_Mutation p.P120A 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 6 154533943 154533943 C T IPCEF1 Silent p.E166E 0.18 TCGA-ZF-A9R7-01 6 157502141 157502141 G C ARID1B Silent p.T1058T 0.29 TCGA-ZF-A9R7-01 6 157528023 157528023 C G ARID1B Missense_Mutation p.I1916M 0.37 possibly_damaging(0.691) TCGA-ZF-A9R7-01 6 159183116 159183116 C G SYTL3 Missense_Mutation p.Q475E 0.27 tolerated(0.19) benign(0.001) TCGA-ZF-A9R7-01 6 167550180 167550180 C G CCR6 Missense_Mutation p.F154L 0.30 deleterious(0.02) benign(0.056) TCGA-ZF-A9R7-01 6 26123904 26123904 C T HIST1H2BC Missense_Mutation p.E77K 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-ZF-A9R7-01 6 26156945 26156945 G C HIST1H1E Missense_Mutation p.K109N 0.23 deleterious(0) unknown(0) TCGA-ZF-A9R7-01 6 26157185 26157185 G A HIST1H1E Silent p.A189A 0.37 TCGA-ZF-A9R7-01 6 26204900 26204900 G A HIST1H4E Missense_Mutation p.G10R 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-A9R7-01 6 26217476 26217476 G A HIST1H2AE Missense_Mutation p.E92K 0.25 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-ZF-A9R7-01 6 26250661 26250661 G C HIST1H3F Missense_Mutation p.S58W 0.32 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-ZF-A9R7-01 6 27782458 27782458 G A HIST1H2AJ Missense_Mutation p.R21W 0.20 deleterious_low_confidence(0) unknown(0) TCGA-ZF-A9R7-01 6 28333425 28333425 C G ZKSCAN3 Nonsense_Mutation p.S327* 0.29 TCGA-ZF-A9R7-01 6 30954637 30954637 G A MUC21 Missense_Mutation p.E229K 0.27 tolerated(0.48) unknown(0) TCGA-ZF-A9R7-01 6 3123966 3123966 C T BPHL Silent p.H61H 0.27 TCGA-ZF-A9R7-01 6 31711711 31711711 C T MSH5 Missense_Mutation p.S149F 0.32 deleterious(0) benign(0.054) TCGA-ZF-A9R7-01 6 31777967 31777967 C G HSPA1L Missense_Mutation p.D595H 0.31 deleterious_low_confidence(0) possibly_damaging(0.676) TCGA-ZF-A9R7-01 6 32089082 32089082 G C ATF6B Silent p.V174V 0.24 TCGA-ZF-A9R7-01 6 34846290 34846290 C T TAF11 3'UTR 0.13 TCGA-ZF-A9R7-01 6 34957043 34957043 G A ANKS1A Missense_Mutation p.E418K 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.573) TCGA-ZF-A9R7-01 6 35391834 35391834 C G PPARD Missense_Mutation p.S179C 0.31 deleterious(0.01) probably_damaging(0.909) TCGA-ZF-A9R7-01 6 35391853 35391853 C A PPARD Silent p.A185A 0.29 TCGA-ZF-A9R7-01 6 36651968 36651968 G A CDKN1A Silent p.L30L 0.31 TCGA-ZF-A9R7-01 6 36652021 36652021 G C CDKN1A Missense_Mutation p.R48P 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 6 39285594 39285594 C G KCNK16 Missense_Mutation p.E155Q 0.42 tolerated(0.09) benign(0.142) TCGA-ZF-A9R7-01 6 39304217 39304217 C G KIF6 3'UTR 0.18 TCGA-ZF-A9R7-01 6 40400223 40400223 C G LRFN2 Missense_Mutation p.Q210H 0.34 tolerated(0.16) benign(0.056) TCGA-ZF-A9R7-01 6 40400429 40400429 C T LRFN2 Missense_Mutation p.E142K 0.35 tolerated(0.63) benign(0.009) TCGA-ZF-A9R7-01 6 4069972 4069972 C G FAM217A Missense_Mutation p.R162T 0.33 tolerated(0.11) benign(0.133) TCGA-ZF-A9R7-01 6 41555233 41555233 C G FOXP4 Silent p.L285L 0.30 TCGA-ZF-A9R7-01 6 49802991 49802991 C T CRISP1 3'UTR 0.28 TCGA-ZF-A9R7-01 6 51613044 51613044 G T PKHD1 Missense_Mutation p.H3124N 0.04 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 6 51776682 51776682 G C PKHD1 Silent p.L2135L 0.24 TCGA-ZF-A9R7-01 6 56342260 56342260 C G DST Missense_Mutation p.K4563N 0.26 probably_damaging(1) TCGA-ZF-A9R7-01 6 56357771 56357771 G A DST Silent p.L4214L 0.31 TCGA-ZF-A9R7-01 6 74124403 74124403 G C DDX43 Missense_Mutation p.R580T 0.31 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9R7-01 6 75796173 75796173 C T COL12A1 3'UTR 0.26 TCGA-ZF-A9R7-01 6 75798870 75798870 C A COL12A1 Nonsense_Mutation p.E2988* 0.26 TCGA-ZF-A9R7-01 6 75798882 75798882 C T COL12A1 Missense_Mutation p.G2984R 0.32 probably_damaging(1) TCGA-ZF-A9R7-01 6 75898184 75898184 G A COL12A1 Silent p.F297F 0.47 TCGA-ZF-A9R7-01 6 75953512 75953512 G A COX7A2 Missense_Mutation p.P12L 0.19 tolerated_low_confidence(0.2) possibly_damaging(0.722) TCGA-ZF-A9R7-01 6 90418320 90418320 C T MDN1 Missense_Mutation p.R2598Q 0.41 probably_damaging(0.996) TCGA-ZF-A9R7-01 6 99894213 99894213 C T USP45 Missense_Mutation p.E479K 0.44 tolerated(0.18) benign(0.142) TCGA-ZF-A9R7-01 7 100345252 100345252 G C ZAN Silent p.V337V 0.31 TCGA-ZF-A9R7-01 7 100473224 100473224 G A SRRT Missense_Mutation p.D5N 0.11 deleterious(0) unknown(0) TCGA-ZF-A9R7-01 7 100609780 100609780 C T MUC3A Intron 0.19 TCGA-ZF-A9R7-01 7 101957749 101957749 G A SH2B2 Missense_Mutation p.A465T 0.34 deleterious(0) possibly_damaging(0.812) TCGA-ZF-A9R7-01 7 102937979 102937979 C G PMPCB Missense_Mutation p.L25V 0.17 tolerated(0.55) benign(0.002) TCGA-ZF-A9R7-01 7 105673167 105673167 C G CDHR3 3'UTR 0.29 TCGA-ZF-A9R7-01 7 107234409 107234409 G C BCAP29 Missense_Mutation p.R68T 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9R7-01 7 107790501 107790501 C G NRCAM Missense_Mutation p.D1257H 0.33 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 7 111382137 111382137 C G DOCK4 Missense_Mutation p.D1568H 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-ZF-A9R7-01 7 117417611 117417611 C G CTTNBP2 Missense_Mutation p.R911T 0.26 tolerated(0.18) benign(0.004) TCGA-ZF-A9R7-01 7 121942048 121942048 C G FEZF1 3'UTR 0.29 TCGA-ZF-A9R7-01 7 1273317 1273317 G A UNCX Missense_Mutation p.E146K 0.36 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 7 134939929 134939929 C T STRA8 Silent p.I290I 0.30 TCGA-ZF-A9R7-01 7 138793963 138793963 C T ZC3HAV1 Missense_Mutation p.E39K 0.43 deleterious(0.01) possibly_damaging(0.899) TCGA-ZF-A9R7-01 7 142124551 142124551 G A TRBV6-8 Silent p.L5L 0.25 TCGA-ZF-A9R7-01 7 142640112 142640112 G C KEL Silent p.L597L 0.29 TCGA-ZF-A9R7-01 7 142880982 142880982 G C TAS2R39 Missense_Mutation p.L157F 0.31 deleterious(0.04) possibly_damaging(0.795) TCGA-ZF-A9R7-01 7 142965881 142965881 G C GSTK1 Missense_Mutation p.G267A 0.23 deleterious(0.01) benign(0.064) TCGA-ZF-A9R7-01 7 142965940 142965940 G T GSTK1 3'UTR 0.18 TCGA-ZF-A9R7-01 7 142965943 142965943 G A GSTK1 3'UTR 0.12 TCGA-ZF-A9R7-01 7 146818149 146818149 C T CNTNAP2 Missense_Mutation p.S278F 0.13 deleterious(0.02) benign(0.314) TCGA-ZF-A9R7-01 7 146829353 146829353 C G CNTNAP2 Missense_Mutation p.S367C 0.34 deleterious(0) possibly_damaging(0.713) TCGA-ZF-A9R7-01 7 149489793 149489793 G A SSPO RNA 0.31 TCGA-ZF-A9R7-01 7 150327218 150327218 C G GIMAP6 Missense_Mutation p.E5Q 0.18 deleterious(0.02) unknown(0) TCGA-ZF-A9R7-01 7 150772301 150772301 G A SLC4A2 Intron 0.24 TCGA-ZF-A9R7-01 7 16899228 16899228 C T AGR3 Missense_Mutation p.R160K 0.15 tolerated(1) benign(0) TCGA-ZF-A9R7-01 7 23509577 23509577 G C IGF2BP3 Silent p.L51L 0.16 TCGA-ZF-A9R7-01 7 2578831 2578831 C T BRAT1 Silent p.E584E 0.41 TCGA-ZF-A9R7-01 7 28996295 28996295 G C AC005013.5 5'Flank 0.33 TCGA-ZF-A9R7-01 7 30643165 30643165 G A GARS Missense_Mutation p.E238K 0.30 deleterious(0.03) benign(0.099) TCGA-ZF-A9R7-01 7 39612071 39612071 G A YAE1D1 Silent p.E149E 0.36 TCGA-ZF-A9R7-01 7 42079828 42079828 G A GLI3 Silent p.F279F 0.29 TCGA-ZF-A9R7-01 7 4285427 4285427 C G SDK1 Nonsense_Mutation p.S2124* 0.29 TCGA-ZF-A9R7-01 7 44046823 44046823 C G SPDYE1 Intron 0.36 TCGA-ZF-A9R7-01 7 44620677 44620677 G A TMED4 Intron 0.27 TCGA-ZF-A9R7-01 7 47317657 47317657 G C TNS3 3'UTR 0.32 TCGA-ZF-A9R7-01 7 4947196 4947196 C G MMD2 Missense_Mutation p.G215A 0.12 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 7 5417591 5417591 G A TNRC18 Silent p.L739L 0.25 TCGA-ZF-A9R7-01 7 5540319 5540319 G A FBXL18 Silent p.I527I 0.50 TCGA-ZF-A9R7-01 7 5540382 5540382 G A FBXL18 Silent p.I506I 0.28 TCGA-ZF-A9R7-01 7 64167065 64167065 G C ZNF107 Missense_Mutation p.R128T 0.20 tolerated(0.07) possibly_damaging(0.465) TCGA-ZF-A9R7-01 7 64838796 64838796 C G ZNF92 5'UTR 0.46 TCGA-ZF-A9R7-01 7 70256013 70256013 G C AUTS2 3'UTR 0.17 TCGA-ZF-A9R7-01 7 72738498 72738498 G C TRIM50 Silent p.L96L 0.13 TCGA-ZF-A9R7-01 7 75145511 75145511 G A Y_RNA 5'Flank 0.14 TCGA-ZF-A9R7-01 7 7625410 7625410 G A MIOS Missense_Mutation p.E598K 0.30 deleterious(0.02) probably_damaging(0.987) TCGA-ZF-A9R7-01 7 76982337 76982337 G T GSAP Nonsense_Mutation p.S472* 0.31 TCGA-ZF-A9R7-01 7 86848739 86848739 C T TMEM243 Intron 0.25 TCGA-ZF-A9R7-01 7 88965090 88965090 G A ZNF804B Missense_Mutation p.V932I 0.25 tolerated(0.07) benign(0.063) TCGA-ZF-A9R7-01 7 91687561 91687561 G C AKAP9 Intron 0.28 TCGA-ZF-A9R7-01 7 95662061 95662061 C T DYNC1I1 Missense_Mutation p.S417F 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-A9R7-01 8 103663469 103663469 G C KLF10 Nonsense_Mutation p.S364* 0.23 TCGA-ZF-A9R7-01 8 121237430 121237430 C G COL14A1 Missense_Mutation p.P614R 0.36 tolerated(0.74) probably_damaging(0.974) TCGA-ZF-A9R7-01 8 125989952 125989952 C G ZNF572 Missense_Mutation p.A481G 0.15 deleterious(0) possibly_damaging(0.534) TCGA-ZF-A9R7-01 8 125990084 125990084 C G ZNF572 Nonsense_Mutation p.S525* 0.14 TCGA-ZF-A9R7-01 8 12947860 12947860 G A DLC1 Silent p.L1325L 0.13 TCGA-ZF-A9R7-01 8 139163459 139163459 C T FAM135B Missense_Mutation p.E1087K 0.10 tolerated(0.06) benign(0.097) TCGA-ZF-A9R7-01 8 144130655 144130655 C T C8orf31 Missense_Mutation p.L129F 0.38 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-ZF-A9R7-01 8 145649189 145649189 C G VPS28 3'UTR 0.19 TCGA-ZF-A9R7-01 8 145667439 145667439 G C TONSL Missense_Mutation p.I282M 0.24 deleterious(0) benign(0.33) TCGA-ZF-A9R7-01 8 14710949 14710949 C A SGCZ Intron 0.34 TCGA-ZF-A9R7-01 8 20107259 20107259 C G LZTS1 Missense_Mutation p.E589Q 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9R7-01 8 25361009 25361009 G C CDCA2 Missense_Mutation p.E598Q 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 8 26365224 26365224 C T PNMA2 Missense_Mutation p.E350K 0.31 tolerated(0.89) benign(0.007) TCGA-ZF-A9R7-01 8 27509101 27509101 C T SCARA3 Silent p.F61F 0.36 TCGA-ZF-A9R7-01 8 27918005 27918005 G C NUGGC Missense_Mutation p.F345L 0.32 tolerated(0.62) benign(0.029) TCGA-ZF-A9R7-01 8 33230042 33230042 G C FUT10 3'UTR 0.32 TCGA-ZF-A9R7-01 8 33367320 33367320 G A TTI2 Nonsense_Mutation p.Q260* 0.37 TCGA-ZF-A9R7-01 8 38133176 38133176 C T WHSC1L1 Missense_Mutation p.E1433K 0.10 deleterious_low_confidence(0.01) benign(0.16) TCGA-ZF-A9R7-01 8 38133224 38133224 C G WHSC1L1 Missense_Mutation p.E1417Q 0.28 tolerated_low_confidence(0.06) benign(0.031) TCGA-ZF-A9R7-01 8 38194862 38194862 C G WHSC1L1 Missense_Mutation p.D291H 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-ZF-A9R7-01 8 39008933 39008933 G A ADAM32 Missense_Mutation p.E131K 0.10 deleterious(0) probably_damaging(0.989) TCGA-ZF-A9R7-01 8 41466948 41466948 G C AGPAT6 Missense_Mutation p.R60T 0.48 deleterious(0.02) benign(0.264) TCGA-ZF-A9R7-01 8 41466953 41466953 G T AGPAT6 Nonsense_Mutation p.E62* 0.46 TCGA-ZF-A9R7-01 8 59352268 59352268 G A UBXN2B Missense_Mutation p.E204K 0.07 deleterious(0.02) possibly_damaging(0.582) TCGA-ZF-A9R7-01 8 59492300 59492300 C T SDCBP Missense_Mutation p.L233F 0.10 deleterious(0) probably_damaging(0.987) TCGA-ZF-A9R7-01 8 6500547 6500547 G C MCPH1 Missense_Mutation p.E829Q 0.09 deleterious(0.02) benign(0.318) TCGA-ZF-A9R7-01 8 67577747 67577747 C G VCPIP1 Missense_Mutation p.E483Q 0.32 deleterious(0.02) possibly_damaging(0.849) TCGA-ZF-A9R7-01 8 68007756 68007756 G A CSPP1 Missense_Mutation p.E247K 0.25 tolerated(0.08) benign(0.089) TCGA-ZF-A9R7-01 8 86157935 86157935 C T CA13 5'UTR 0.24 TCGA-ZF-A9R7-01 8 95189879 95189879 C A CDH17 Missense_Mutation p.R74L 0.25 tolerated(0.1) benign(0.081) TCGA-ZF-A9R7-01 8 95523740 95523740 C G KIAA1429 Silent p.L1021L 0.34 TCGA-ZF-A9R7-01 8 97605705 97605705 C G SDC2 Intron 0.31 TCGA-ZF-A9R7-01 9 105767646 105767646 G A CYLC2 Missense_Mutation p.E245K 0.19 tolerated(1) unknown(0) TCGA-ZF-A9R7-01 9 111617807 111617807 C T ACTL7B Missense_Mutation p.R135H 0.65 tolerated(0.39) benign(0.001) TCGA-ZF-A9R7-01 9 111979333 111979333 G A EPB41L4B Missense_Mutation p.S501L 0.50 tolerated(0.06) benign(0.035) TCGA-ZF-A9R7-01 9 116224332 116224332 C G RGS3 Missense_Mutation p.S89C 0.57 deleterious_low_confidence(0) benign(0) TCGA-ZF-A9R7-01 9 117119145 117119145 G C AKNA Missense_Mutation p.I948M 0.47 deleterious(0.03) benign(0.352) TCGA-ZF-A9R7-01 9 126133737 126133737 C T CRB2 Silent p.L772L 0.19 TCGA-ZF-A9R7-01 9 130494578 130494578 G A TOR2A Intron 0.58 TCGA-ZF-A9R7-01 9 134034817 134034817 G C NUP214 Silent p.V828V 0.23 TCGA-ZF-A9R7-01 9 134361132 134361132 G C PRRC2B Intron 0.49 TCGA-ZF-A9R7-01 9 135211731 135211731 G C SETX Missense_Mutation p.L224V 0.44 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R7-01 9 136857321 136857321 G C VAV2 Missense_Mutation p.S27W 0.43 deleterious(0.01) probably_damaging(0.957) TCGA-ZF-A9R7-01 9 138377703 138377703 C A PPP1R26 Silent p.L449L 0.65 TCGA-ZF-A9R7-01 9 139008402 139008402 G A C9orf69 Silent p.L115L 0.57 TCGA-ZF-A9R7-01 9 17340840 17340840 G A CNTLN Missense_Mutation p.E554K 0.71 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9R7-01 9 18680332 18680332 G A ADAMTSL1 Missense_Mutation p.A387T 0.77 deleterious(0) probably_damaging(0.975) TCGA-ZF-A9R7-01 9 19372306 19372306 G A DENND4C 3'UTR 0.70 TCGA-ZF-A9R7-01 9 19372307 19372307 A T DENND4C 3'UTR 0.70 TCGA-ZF-A9R7-01 9 215012 215012 C T C9orf66 Missense_Mutation p.E129K 0.27 tolerated_low_confidence(0.15) possibly_damaging(0.502) TCGA-ZF-A9R7-01 9 27548392 27548392 G C C9orf72 Missense_Mutation p.L430V 0.73 tolerated(0.21) probably_damaging(0.996) TCGA-ZF-A9R7-01 9 32407326 32407326 G C ACO1 Silent p.V55V 0.53 TCGA-ZF-A9R7-01 9 34517360 34517360 C G DNAI1 Silent p.L632L 0.45 TCGA-ZF-A9R7-01 9 35714018 35714018 C G TLN1 Missense_Mutation p.E1061Q 0.68 tolerated(0.24) benign(0.073) TCGA-ZF-A9R7-01 9 43625344 43625344 C T SPATA31A6 Missense_Mutation p.E1115K 0.59 tolerated(1) possibly_damaging(0.757) TCGA-ZF-A9R7-01 9 441372 441372 C G DOCK8 Silent p.L1770L 0.68 TCGA-ZF-A9R7-01 X 101818336 101818336 G A NXF4 RNA 0.27 TCGA-ZF-A9R7-01 X 101970855 101970855 G A GPRASP2 Missense_Mutation p.R353K 0.18 tolerated(0.23) benign(0.037) TCGA-ZF-A9R7-01 X 107018395 107018395 G C TSC22D3 Missense_Mutation p.I85M 0.32 tolerated(0.1) benign(0.069) TCGA-ZF-A9R7-01 X 107979390 107979390 G A IRS4 Missense_Mutation p.S62F 0.40 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-ZF-A9R7-01 X 112048228 112048228 G A AMOT Nonsense_Mutation p.R575* 0.06 TCGA-ZF-A9R7-01 X 114537871 114537871 C G LUZP4 Nonsense_Mutation p.S77* 0.25 TCGA-ZF-A9R7-01 X 125686427 125686427 C G DCAF12L1 Silent p.L55L 0.30 TCGA-ZF-A9R7-01 X 128957704 128957704 G A ZDHHC9 Silent p.I146I 0.21 TCGA-ZF-A9R7-01 X 129499587 129499587 G A SLC25A14 Missense_Mutation p.M264I 0.26 deleterious(0) possibly_damaging(0.692) TCGA-ZF-A9R7-01 X 132091164 132091164 G A HS6ST2 Missense_Mutation p.R207C 0.27 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-ZF-A9R7-01 X 134424953 134424953 C G ZNF75D Missense_Mutation p.E269Q 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-ZF-A9R7-01 X 134427803 134427803 G A ZNF75D Silent p.I88I 0.30 TCGA-ZF-A9R7-01 X 135427390 135427390 C T GPR112 Missense_Mutation p.L509F 0.21 tolerated(0.12) benign(0.013) TCGA-ZF-A9R7-01 X 135427505 135427505 C T GPR112 Missense_Mutation p.S547F 0.26 tolerated(1) benign(0.004) TCGA-ZF-A9R7-01 X 144903930 144903930 G A SLITRK2 5'UTR 0.47 TCGA-ZF-A9R7-01 X 152160206 152160206 C G PNMA5 5'UTR 0.39 TCGA-ZF-A9R7-01 X 152938058 152938058 C A PNCK Nonsense_Mutation p.E138* 0.27 TCGA-ZF-A9R7-01 X 154132253 154132253 G T F8 Missense_Mutation p.H1976N 0.25 deleterious(0) probably_damaging(1) TCGA-ZF-A9R7-01 X 17819644 17819644 C T RAI2 Missense_Mutation p.E163K 0.25 tolerated(0.92) possibly_damaging(0.801) TCGA-ZF-A9R7-01 X 18275147 18275147 G C SCML2 Missense_Mutation p.S426C 0.35 tolerated(0.18) benign(0.078) TCGA-ZF-A9R7-01 X 19560282 19560282 G T SH3KBP1 Silent p.P551P 0.16 TCGA-ZF-A9R7-01 X 19984478 19984478 G A CXorf23 Nonsense_Mutation p.Q111* 0.38 TCGA-ZF-A9R7-01 X 19984595 19984595 G A CXorf23 Nonsense_Mutation p.Q72* 0.30 TCGA-ZF-A9R7-01 X 21875005 21875005 C T YY2 Nonsense_Mutation p.Q135* 0.32 TCGA-ZF-A9R7-01 X 2832793 2832793 G A ARSD Intron 0.21 TCGA-ZF-A9R7-01 X 302113 302113 C T PPP2R3B Silent p.K368K 0.18 TCGA-ZF-A9R7-01 X 306333 306333 G A PPP2R3B Silent p.V318V 0.32 TCGA-ZF-A9R7-01 X 34148133 34148133 G A FAM47A Nonsense_Mutation p.Q755* 0.23 TCGA-ZF-A9R7-01 X 40506390 40506390 G A CXorf38 Nonsense_Mutation p.Q74* 0.35 TCGA-ZF-A9R7-01 X 41084104 41084104 G C USP9X Missense_Mutation p.K2287N 0.25 deleterious(0) probably_damaging(0.977) TCGA-ZF-A9R7-01 X 46739223 46739223 G A RP2 3'UTR 0.31 TCGA-ZF-A9R7-01 X 47774577 47774577 C T ZNF81 Missense_Mutation p.P178S 0.27 tolerated(0.14) benign(0.002) TCGA-ZF-A9R7-01 X 48772314 48772314 G T PIM2 Missense_Mutation p.P193H 0.39 tolerated(0.38) possibly_damaging(0.785) TCGA-ZF-A9R7-01 X 50125513 50125513 C T DGKK RNA 0.46 TCGA-ZF-A9R7-01 X 53115045 53115045 G A TSPYL2 Missense_Mutation p.E491K 0.24 tolerated_low_confidence(0.36) benign(0.028) TCGA-ZF-A9R7-01 X 53576080 53576080 G A HUWE1 Missense_Mutation p.A3292V 0.09 possibly_damaging(0.483) TCGA-ZF-A9R7-01 X 54581048 54581048 G A GNL3L Missense_Mutation p.E457K 0.23 tolerated(0.21) benign(0.008) TCGA-ZF-A9R7-01 X 64959737 64959737 C T MSN Silent p.D572D 0.28 TCGA-ZF-A9R7-01 X 69673486 69673486 G A DLG3 Splice_Site p.X382_splice 0.38 TCGA-ZF-A9R7-01 X 70607185 70607185 G C TAF1 Silent p.R787R 0.34 TCGA-ZF-A9R7-01 X 71715033 71715033 C T HDAC8 Missense_Mutation p.V175M 0.17 deleterious(0) probably_damaging(0.926) TCGA-ZF-A9R7-01 X 73042146 73042146 G C XIST RNA 0.21 TCGA-ZF-A9R7-01 X 73641814 73641814 C G SLC16A2 Missense_Mutation p.I114M 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R7-01 X 75648955 75648955 C T MAGEE1 Missense_Mutation p.S211F 0.33 tolerated_low_confidence(0.08) benign(0.002) TCGA-ZF-A9R7-01 X 8553350 8553350 G A KAL1 Nonsense_Mutation p.R272* 0.35 TCGA-ZF-A9R7-01 X 91131800 91131800 C T PCDH11X Silent p.L187L 0.22 TCGA-ZF-A9R7-01 X 96139571 96139571 A T RPA4 Missense_Mutation p.N88Y 0.28 tolerated(0.11) possibly_damaging(0.598) TCGA-ZF-A9R7-01 X 9914842 9914842 C T SHROOM2 Silent p.L1572L 0.21 TCGA-ZF-A9R9-01 10 101639932 101639932 G A DNMBP Missense_Mutation p.T1395I 0.30 deleterious(0.03) possibly_damaging(0.774) TCGA-ZF-A9R9-01 10 108430992 108430992 C G SORCS1 Intron 0.34 TCGA-ZF-A9R9-01 10 125434350 125434350 C T GPR26 Silent p.L229L 0.45 TCGA-ZF-A9R9-01 10 126715604 126715604 G A CTBP2 Missense_Mutation p.P242L 0.42 deleterious_low_confidence(0.05) benign(0.025) TCGA-ZF-A9R9-01 10 127529824 127529824 G A BCCIP Missense_Mutation p.E259K 0.38 tolerated(0.66) benign(0.031) TCGA-ZF-A9R9-01 10 127529849 127529849 G C BCCIP Missense_Mutation p.G267A 0.41 deleterious_low_confidence(0.02) benign(0.011) TCGA-ZF-A9R9-01 10 127529899 127529899 G A BCCIP Missense_Mutation p.G284S 0.53 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-ZF-A9R9-01 10 128193531 128193531 G A C10orf90 Missense_Mutation p.R80C 0.14 tolerated(0.07) benign(0.002) TCGA-ZF-A9R9-01 10 17130175 17130175 T A CUBN Missense_Mutation p.K645N 0.21 tolerated(0.28) possibly_damaging(0.735) TCGA-ZF-A9R9-01 10 27539431 27539431 G C RP11-85G18.6 RNA 0.05 TCGA-ZF-A9R9-01 10 28824671 28824674 AGAG - WAC Frame_Shift_Del p.E88Gfs*103 0.38 TCGA-ZF-A9R9-01 10 32573844 32573844 G A EPC1 Missense_Mutation p.S509F 0.49 tolerated(0.08) benign(0.107) TCGA-ZF-A9R9-01 10 46111887 46111887 G C ZFAND4 Missense_Mutation p.I727M 0.12 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9R9-01 10 60123412 60123412 A G UBE2D1 Missense_Mutation p.H55R 0.19 deleterious_low_confidence(0.04) benign(0.227) TCGA-ZF-A9R9-01 10 72636365 72636365 C T SGPL1 Nonsense_Mutation p.R505* 0.13 TCGA-ZF-A9R9-01 10 73466659 73466659 G T C10orf105 3'Flank 0.29 TCGA-ZF-A9R9-01 10 74114614 74114614 G A DNAJB12 Silent p.I48I 0.53 TCGA-ZF-A9R9-01 11 102196240 102196240 C T BIRC3 Silent p.L299L 0.38 TCGA-ZF-A9R9-01 11 102987401 102987401 C A DYNC2H1 Missense_Mutation p.H242N 0.09 benign(0.016) TCGA-ZF-A9R9-01 11 108017068 108017068 C T ACAT1 Missense_Mutation p.S382F 0.26 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R9-01 11 108062880 108062880 T C NPAT Silent p.L85L 0.40 TCGA-ZF-A9R9-01 11 117973950 117973950 G A TMPRSS4 Missense_Mutation p.E98K 0.19 tolerated(0.13) benign(0.102) TCGA-ZF-A9R9-01 11 122795651 122795651 C T C11orf63 Missense_Mutation p.A304V 0.13 tolerated(0.31) benign(0.276) TCGA-ZF-A9R9-01 11 128426255 128426255 G A ETS1 Missense_Mutation p.P49S 0.16 tolerated_low_confidence(0.66) benign(0) TCGA-ZF-A9R9-01 11 128680487 128680487 G A FLI1 Nonsense_Mutation p.W321* 0.19 TCGA-ZF-A9R9-01 11 18956036 18956036 T C MRGPRX1 Missense_Mutation p.Y99C 0.30 tolerated(0.17) benign(0.386) TCGA-ZF-A9R9-01 11 22387208 22387208 G C SLC17A6 Missense_Mutation p.E288D 0.15 tolerated(0.07) benign(0.02) TCGA-ZF-A9R9-01 11 32874936 32874936 G C PRRG4 Missense_Mutation p.E182Q 0.31 deleterious(0.05) possibly_damaging(0.832) TCGA-ZF-A9R9-01 11 43418281 43418281 A G TTC17 Missense_Mutation p.Y229C 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R9-01 11 47178647 47178647 G A C11orf49 Silent p.P175P 0.13 TCGA-ZF-A9R9-01 11 48146585 48146585 G A PTPRJ Missense_Mutation p.V314M 0.22 tolerated(0.24) benign(0.06) TCGA-ZF-A9R9-01 11 4843356 4843356 G C OR51F2 Missense_Mutation p.E247D 0.44 deleterious(0.02) benign(0.428) TCGA-ZF-A9R9-01 11 4945295 4945295 C G OR51G1 Missense_Mutation p.R92T 0.63 deleterious(0.03) benign(0.06) TCGA-ZF-A9R9-01 11 58275433 58275433 G A OR5B21 Missense_Mutation p.S49L 0.21 tolerated_low_confidence(1) benign(0.004) TCGA-ZF-A9R9-01 11 62010904 62010904 G A SCGB1D2 Missense_Mutation p.D67N 0.17 tolerated(0.19) possibly_damaging(0.571) TCGA-ZF-A9R9-01 11 62655996 62655996 C T SLC3A2 Missense_Mutation p.S576L 0.03 tolerated(0.16) benign(0.004) TCGA-ZF-A9R9-01 11 66192042 66192042 T C NPAS4 Missense_Mutation p.Y561H 0.21 deleterious(0) probably_damaging(0.971) TCGA-ZF-A9R9-01 11 68377432 68377432 C T PPP6R3 Silent p.P843P 0.17 TCGA-ZF-A9R9-01 11 70007296 70007296 C T ANO1 Silent p.G536G 0.23 TCGA-ZF-A9R9-01 12 112123512 112123512 C T BRAP Intron 0.38 TCGA-ZF-A9R9-01 12 112666519 112666519 T C HECTD4 Missense_Mutation p.R2060G 0.27 benign(0.074) TCGA-ZF-A9R9-01 12 121757577 121757577 C G ANAPC5 Missense_Mutation p.M520I 0.11 tolerated(0.16) benign(0.01) TCGA-ZF-A9R9-01 12 133220126 133220127 - GCC POLE In_Frame_Ins p.A1437dup 0.23 TCGA-ZF-A9R9-01 12 133732599 133732599 C G ZNF10 Nonsense_Mutation p.S256* 0.50 TCGA-ZF-A9R9-01 12 29496108 29496108 G A ERGIC2 Silent p.F311F 0.37 TCGA-ZF-A9R9-01 12 31854859 31854859 C G AMN1 Missense_Mutation p.R85T 0.30 tolerated(0.09) benign(0.411) TCGA-ZF-A9R9-01 12 49224435 49224435 C G DDX23 Missense_Mutation p.K760N 0.37 deleterious(0.02) benign(0.285) TCGA-ZF-A9R9-01 12 49224476 49224476 C G DDX23 Splice_Site p.X747_splice 0.33 TCGA-ZF-A9R9-01 12 49225906 49225906 C G DDX23 Missense_Mutation p.Q673H 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-ZF-A9R9-01 12 53722562 53722562 G A SP7 Missense_Mutation p.H222Y 0.47 deleterious(0) possibly_damaging(0.523) TCGA-ZF-A9R9-01 12 69103805 69103805 G C NUP107 Missense_Mutation p.E274D 0.28 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9R9-01 12 69140440 69140440 C T SLC35E3 Silent p.L95L 0.49 TCGA-ZF-A9R9-01 13 25030481 25030481 C T PARP4 Missense_Mutation p.E854K 0.27 deleterious(0) benign(0.241) TCGA-ZF-A9R9-01 13 73649902 73649902 G T KLF5 Missense_Mutation p.D418Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9R9-01 14 100380515 100380515 G C EML1 Splice_Site p.X518_splice 0.21 TCGA-ZF-A9R9-01 14 105411692 105411692 C T AHNAK2 Missense_Mutation p.E3366K 0.20 benign(0.298) TCGA-ZF-A9R9-01 14 33292500 33292500 C T AKAP6 Silent p.G1827G 0.45 TCGA-ZF-A9R9-01 14 39587279 39587279 C T GEMIN2 Missense_Mutation p.S111L 0.28 deleterious(0) probably_damaging(0.983) TCGA-ZF-A9R9-01 14 74874331 74874331 G C SYNDIG1L Missense_Mutation p.F208L 0.36 tolerated(0.09) probably_damaging(0.987) TCGA-ZF-A9R9-01 15 25223402 25223402 G T SNRPN Missense_Mutation p.A208S 0.51 tolerated(0.2) unknown(0) TCGA-ZF-A9R9-01 15 40326640 40326640 A C EIF2AK4 Missense_Mutation p.E1629D 0.25 tolerated(0.07) benign(0.124) TCGA-ZF-A9R9-01 15 42695006 42695006 G C CAPN3 Missense_Mutation p.K517N 0.33 tolerated(0.42) benign(0.007) TCGA-ZF-A9R9-01 15 42695007 42695007 C A CAPN3 Missense_Mutation p.Q518K 0.33 tolerated(0.49) benign(0.019) TCGA-ZF-A9R9-01 15 48757826 48757826 C T FBN1 Silent p.G1627G 0.51 TCGA-ZF-A9R9-01 15 51772275 51772275 G A DMXL2 Missense_Mutation p.S2209L 0.24 tolerated(0.82) probably_damaging(0.999) TCGA-ZF-A9R9-01 15 53907716 53907716 C T WDR72 Missense_Mutation p.R896Q 0.27 tolerated(1) benign(0) TCGA-ZF-A9R9-01 15 65113661 65113661 G A PIF1 Silent p.G292G 0.21 TCGA-ZF-A9R9-01 15 80467371 80467371 T C FAH Missense_Mutation p.L284P 0.22 deleterious(0.01) possibly_damaging(0.769) TCGA-ZF-A9R9-01 15 83680308 83680308 G A C15orf40 Missense_Mutation p.R18W 0.33 tolerated_low_confidence(0.14) benign(0.004) TCGA-ZF-A9R9-01 15 84228047 84228047 G C SH3GL3 Missense_Mutation p.D30H 0.40 deleterious(0) probably_damaging(0.973) TCGA-ZF-A9R9-01 15 99512767 99512767 G A PGPEP1L Silent p.G86G 0.33 TCGA-ZF-A9R9-01 16 1808982 1808982 G A MAPK8IP3 Missense_Mutation p.R410H 0.06 tolerated(0.08) possibly_damaging(0.63) TCGA-ZF-A9R9-01 16 2136224 2136224 G C TSC2 Missense_Mutation p.E1565Q 0.13 tolerated(0.29) probably_damaging(0.999) TCGA-ZF-A9R9-01 16 28884772 28884772 G A SH2B1 Silent p.P634P 0.30 TCGA-ZF-A9R9-01 16 3016434 3016434 G A KREMEN2 Missense_Mutation p.R157H 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R9-01 16 74695020 74695020 G A RFWD3 Missense_Mutation p.H110Y 0.22 tolerated_low_confidence(0.64) benign(0.232) TCGA-ZF-A9R9-01 17 1715324 1715324 C G SMYD4 Missense_Mutation p.E74Q 0.30 tolerated(0.43) benign(0.019) TCGA-ZF-A9R9-01 17 18023070 18023070 C T MYO15A Missense_Mutation p.P319L 0.34 possibly_damaging(0.726) TCGA-ZF-A9R9-01 17 18098336 18098336 A G ALKBH5 Missense_Mutation p.I280V 0.24 tolerated(0.12) benign(0.04) TCGA-ZF-A9R9-01 17 2278990 2278990 G A SGSM2 Missense_Mutation p.D769N 0.23 deleterious(0.03) probably_damaging(0.925) TCGA-ZF-A9R9-01 17 26370290 26370290 C T NLK Missense_Mutation p.H131Y 0.33 tolerated(0.1) benign(0.152) TCGA-ZF-A9R9-01 17 27816732 27816732 C T TAOK1 Missense_Mutation p.H236Y 0.10 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R9-01 17 29061768 29061768 G C CTD-2349P21.5 3'Flank 0.42 TCGA-ZF-A9R9-01 17 29061819 29061819 G A CTD-2349P21.5 3'Flank 0.43 TCGA-ZF-A9R9-01 17 29061933 29061933 G C CTD-2349P21.5 3'Flank 0.56 TCGA-ZF-A9R9-01 17 39197195 39197195 G T KRTAP1-1 Missense_Mutation p.S152Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9R9-01 17 40055022 40055022 G A ACLY Silent p.I400I 0.24 TCGA-ZF-A9R9-01 17 41585879 41585879 C A DHX8 Silent p.G831G 0.08 TCGA-ZF-A9R9-01 17 42848993 42848993 G A ADAM11 Silent p.G141G 0.51 TCGA-ZF-A9R9-01 17 43482298 43482298 G C ARHGAP27 Missense_Mutation p.Q73E 0.22 tolerated(0.21) benign(0.005) TCGA-ZF-A9R9-01 17 49231798 49231798 G A NME1 Missense_Mutation p.D22N 0.61 tolerated(0.47) benign(0) TCGA-ZF-A9R9-01 17 6502620 6502620 T C KIAA0753 Silent p.E703E 0.23 TCGA-ZF-A9R9-01 17 65163705 65163705 C G HELZ Missense_Mutation p.Q546H 0.29 deleterious(0.03) possibly_damaging(0.465) TCGA-ZF-A9R9-01 17 80012512 80012512 G T GPS1 Silent p.L185L 0.09 TCGA-ZF-A9R9-01 17 80012828 80012828 G C GPS1 Missense_Mutation p.E262Q 0.15 deleterious(0.01) benign(0.183) TCGA-ZF-A9R9-01 17 80422187 80422187 G A NARF Missense_Mutation p.D45N 0.34 tolerated(0.16) benign(0.008) TCGA-ZF-A9R9-01 18 29972903 29972903 G A GAREM Missense_Mutation p.H73Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9R9-01 18 30349767 30349767 C T KLHL14 Missense_Mutation p.R263H 0.32 tolerated(0.58) probably_damaging(0.975) TCGA-ZF-A9R9-01 18 51025831 51025831 G A DCC Missense_Mutation p.M1354I 0.23 tolerated(0.46) possibly_damaging(0.565) TCGA-ZF-A9R9-01 19 10395132 10395132 G A ICAM1 Missense_Mutation p.E327K 0.12 tolerated(0.83) benign(0.057) TCGA-ZF-A9R9-01 19 17417117 17417117 C G MRPL34 Missense_Mutation p.L70V 0.33 tolerated(0.08) probably_damaging(0.995) TCGA-ZF-A9R9-01 19 20728645 20728645 C T ZNF737 Missense_Mutation p.E122K 0.12 deleterious(0.05) benign(0.168) TCGA-ZF-A9R9-01 19 2097131 2097131 G A IZUMO4 Missense_Mutation p.E63K 0.51 tolerated(0.14) probably_damaging(0.953) TCGA-ZF-A9R9-01 19 36357115 36357115 C T KIRREL2 Silent p.G616G 0.16 TCGA-ZF-A9R9-01 19 37309471 37309471 G A ZNF790 Missense_Mutation p.T592I 0.16 deleterious(0.02) benign(0.03) TCGA-ZF-A9R9-01 19 4055075 4055075 C T ZBTB7A Silent p.L52L 0.50 TCGA-ZF-A9R9-01 19 4157027 4157027 C T CREB3L3 Silent p.L64L 0.16 TCGA-ZF-A9R9-01 19 43688931 43688931 C T PSG5 Intron 0.20 TCGA-ZF-A9R9-01 19 45851299 45851299 G A KLC3 Silent p.Q220Q 0.74 TCGA-ZF-A9R9-01 19 47127263 47127263 C T PTGIR Missense_Mutation p.A74T 0.75 tolerated(0.06) possibly_damaging(0.483) TCGA-ZF-A9R9-01 19 51171695 51171695 G T SHANK1 Silent p.G1174G 0.11 TCGA-ZF-A9R9-01 19 55687142 55687142 G A SYT5 Missense_Mutation p.R159W 0.17 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9R9-01 19 56896121 56896121 G A ZNF582 Missense_Mutation p.S222F 0.38 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9R9-01 19 59028913 59028913 G A ZBTB45 Missense_Mutation p.S43L 0.43 tolerated(0.05) probably_damaging(0.992) TCGA-ZF-A9R9-01 19 6495282 6495282 C T TUBB4A Missense_Mutation p.E410K 0.03 deleterious_low_confidence(0) benign(0.014) TCGA-ZF-A9R9-01 19 7542273 7542273 C T PEX11G Missense_Mutation p.E181K 0.78 tolerated(0.07) benign(0.33) TCGA-ZF-A9R9-01 19 8155062 8155062 G C FBN3 Silent p.T2035T 0.42 TCGA-ZF-A9R9-01 1 10702931 10702931 C T CASZ1 Missense_Mutation p.E1383K 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.811) TCGA-ZF-A9R9-01 1 111773470 111773470 C T CHI3L2 Silent p.L59L 0.47 TCGA-ZF-A9R9-01 1 114454727 114454727 C G DCLRE1B Missense_Mutation p.L505V 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZF-A9R9-01 1 150676764 150676764 G A HORMAD1 Missense_Mutation p.S287F 0.12 tolerated(0.09) benign(0.013) TCGA-ZF-A9R9-01 1 151006388 151006388 C T PRUNE Missense_Mutation p.S347F 0.35 deleterious(0.01) benign(0.309) TCGA-ZF-A9R9-01 1 155903469 155903469 G A KIAA0907 Silent p.L70L 0.46 TCGA-ZF-A9R9-01 1 15986596 15986596 C G RSC1A1 Missense_Mutation p.S78C 0.45 tolerated(0.07) probably_damaging(0.957) TCGA-ZF-A9R9-01 1 165667616 165667616 G T ALDH9A1 Silent p.T60T 0.20 TCGA-ZF-A9R9-01 1 174188319 174188319 G A RABGAP1L Silent p.Q8Q 0.52 TCGA-ZF-A9R9-01 1 201029819 201029819 G A CACNA1S Silent p.L1127L 0.42 TCGA-ZF-A9R9-01 1 212870373 212870373 C G BATF3 Missense_Mutation p.R42T 0.24 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R9-01 1 228645514 228645514 G C HIST3H2A Missense_Mutation p.S2C 0.37 deleterious_low_confidence(0.03) benign(0.184) TCGA-ZF-A9R9-01 1 27106123 27106123 G A ARID1A Missense_Mutation p.D1912N 0.52 benign(0.175) TCGA-ZF-A9R9-01 1 32126208 32126208 C T COL16A1 Missense_Mutation p.R1286K 0.35 unknown(0) TCGA-ZF-A9R9-01 1 47025942 47025942 G A MKNK1 Missense_Mutation p.P379L 0.12 deleterious(0.01) benign(0.008) TCGA-ZF-A9R9-01 1 54060008 54060008 C A GLIS1 Missense_Mutation p.V190L 0.11 tolerated(0.46) benign(0) TCGA-ZF-A9R9-01 1 7837320 7837320 C T VAMP3 Missense_Mutation p.S58F 0.51 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-ZF-A9R9-01 1 7890164 7890164 C A PER3 Missense_Mutation p.L1044M 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-ZF-A9R9-01 1 91784919 91784919 G A HFM1 Missense_Mutation p.P871S 0.23 tolerated(0.15) possibly_damaging(0.449) TCGA-ZF-A9R9-01 20 17587722 17587722 C T DSTN Silent p.L143L 0.59 TCGA-ZF-A9R9-01 20 2381073 2381073 G C TGM6 Silent p.L324L 0.28 TCGA-ZF-A9R9-01 20 3209344 3209344 G A SLC4A11 Silent p.N777N 0.25 TCGA-ZF-A9R9-01 20 41419897 41419897 C T PTPRT Missense_Mutation p.V142I 0.38 tolerated(0.43) benign(0.03) TCGA-ZF-A9R9-01 20 45867645 45867645 G C ZMYND8 Nonsense_Mutation p.S841* 0.21 TCGA-ZF-A9R9-01 20 60878805 60878805 T C ADRM1 Missense_Mutation p.W61R 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-A9R9-01 21 16337013 16337013 C T NRIP1 3'UTR 0.17 TCGA-ZF-A9R9-01 21 27423404 27423404 C G APP Missense_Mutation p.E192Q 0.51 tolerated(0.56) unknown(0) TCGA-ZF-A9R9-01 21 32595886 32595886 G A TIAM1 Missense_Mutation p.L611F 0.07 deleterious(0) possibly_damaging(0.725) TCGA-ZF-A9R9-01 22 38539189 38539189 G A PLA2G6 Nonsense_Mutation p.Q178* 0.29 TCGA-ZF-A9R9-01 22 42981267 42981267 C T POLDIP3 3'UTR 0.78 TCGA-ZF-A9R9-01 22 43658794 43658794 G A SCUBE1 Missense_Mutation p.P181L 0.47 deleterious(0.03) possibly_damaging(0.792) TCGA-ZF-A9R9-01 2 101185461 101185461 G A PDCL3 Missense_Mutation p.E68K 0.53 tolerated(0.07) probably_damaging(0.952) TCGA-ZF-A9R9-01 2 10187792 10187792 C T KLF11 Nonsense_Mutation p.Q110* 0.46 TCGA-ZF-A9R9-01 2 103121870 103121870 G A SLC9A4 Missense_Mutation p.E380K 0.48 deleterious(0.02) possibly_damaging(0.899) TCGA-ZF-A9R9-01 2 122206565 122206565 G C CLASP1 Nonsense_Mutation p.S552* 0.67 TCGA-ZF-A9R9-01 2 159992710 159992710 G A TANC1 Missense_Mutation p.V89I 0.32 tolerated_low_confidence(0.64) benign(0.001) TCGA-ZF-A9R9-01 2 160836387 160836387 C G PLA2R1 Missense_Mutation p.R741T 0.28 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9R9-01 2 160898620 160898620 C T PLA2R1 Missense_Mutation p.E195K 0.23 deleterious(0) probably_damaging(0.967) TCGA-ZF-A9R9-01 2 173901370 173901370 C T RAPGEF4 Missense_Mutation p.H935Y 0.08 deleterious(0) possibly_damaging(0.901) TCGA-ZF-A9R9-01 2 179590530 179590530 C T TTN Missense_Mutation p.G6840E 0.11 TCGA-ZF-A9R9-01 2 193044293 193044293 A G TMEFF2 Intron 0.26 TCGA-ZF-A9R9-01 2 198950817 198950817 G A PLCL1 Missense_Mutation p.R859H 0.18 deleterious(0) probably_damaging(0.953) TCGA-ZF-A9R9-01 2 203684592 203684592 C T ICA1L Silent p.L130L 0.56 TCGA-ZF-A9R9-01 2 219677005 219677005 G A CYP27A1 Silent p.A169A 0.49 TCGA-ZF-A9R9-01 2 223168696 223168696 G C CCDC140 Missense_Mutation p.Q25H 0.33 tolerated_low_confidence(0.19) benign(0.387) TCGA-ZF-A9R9-01 2 231065644 231065644 C T SP110 Silent p.K362K 0.27 TCGA-ZF-A9R9-01 2 238283455 238283455 G A COL6A3 Silent p.N1093N 0.32 TCGA-ZF-A9R9-01 2 25384043 25384043 G A POMC Silent p.Y237Y 0.24 TCGA-ZF-A9R9-01 2 28739683 28739683 C G PLB1 Missense_Mutation p.Q22E 0.32 deleterious_low_confidence(0.02) benign(0.002) TCGA-ZF-A9R9-01 2 31360934 31360934 G C GALNT14 Missense_Mutation p.R7G 0.28 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-ZF-A9R9-01 2 32613998 32613998 C G BIRC6 Missense_Mutation p.R276G 0.22 benign(0.158) TCGA-ZF-A9R9-01 2 43926911 43926911 G C PLEKHH2 Missense_Mutation p.D272H 0.23 deleterious(0.02) benign(0.399) TCGA-ZF-A9R9-01 2 54570910 54570910 C T C2orf73 Silent p.Y96Y 0.23 TCGA-ZF-A9R9-01 2 62104160 62104160 C T CCT4 Silent p.V224V 0.20 TCGA-ZF-A9R9-01 2 73679003 73679003 G C ALMS1 Silent p.L1782L 0.32 TCGA-ZF-A9R9-01 2 73679589 73679589 G T ALMS1 Missense_Mutation p.G1978W 0.39 probably_damaging(0.961) TCGA-ZF-A9R9-01 3 129389306 129389311 CAAATC TAAAATT TMCC1 Nonsense_Mutation p.G458Efs*3 0.42 TCGA-ZF-A9R9-01 3 137796463 137796463 A G DZIP1L Missense_Mutation p.S434P 0.20 deleterious(0.03) benign(0.055) TCGA-ZF-A9R9-01 3 138724870 138724870 C G PRR23A Missense_Mutation p.E81Q 0.43 deleterious(0.02) probably_damaging(0.963) TCGA-ZF-A9R9-01 3 139086984 139086984 T A COPB2 Intron 0.48 TCGA-ZF-A9R9-01 3 14508132 14508132 G C SLC6A6 Missense_Mutation p.D281H 0.10 deleterious(0) probably_damaging(0.952) TCGA-ZF-A9R9-01 3 15726928 15726928 C T ANKRD28 Missense_Mutation p.V702I 0.16 tolerated(0.13) benign(0.135) TCGA-ZF-A9R9-01 3 15762632 15762632 C T ANKRD28 Missense_Mutation p.M232I 0.32 tolerated(1) benign(0.002) TCGA-ZF-A9R9-01 3 183551543 183551543 A C PARL Missense_Mutation p.F300C 0.22 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9R9-01 3 183904001 183904001 G A ABCF3 Silent p.A2A 0.61 TCGA-ZF-A9R9-01 3 189705320 189705320 C G LEPREL1 Missense_Mutation p.R365T 0.58 deleterious(0) probably_damaging(0.937) TCGA-ZF-A9R9-01 3 195698251 195698251 C T SDHAP1 RNA 0.09 TCGA-ZF-A9R9-01 3 23250252 23250252 G A UBE2E2 Missense_Mutation p.G21E 0.18 tolerated_low_confidence(0.16) probably_damaging(0.931) TCGA-ZF-A9R9-01 3 30715724 30715725 GT A TGFBR2 Frame_Shift_Del p.C486* 0.15 TCGA-ZF-A9R9-01 3 37343705 37343705 G C GOLGA4 Missense_Mutation p.Q394H 0.52 probably_damaging(1) TCGA-ZF-A9R9-01 3 42576581 42576581 C T VIPR1 Silent p.V375V 0.46 TCGA-ZF-A9R9-01 3 44763678 44763678 C T ZNF502 Missense_Mutation p.H457Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R9-01 3 48685349 48685349 G A CELSR3 Nonsense_Mutation p.R2352* 0.28 TCGA-ZF-A9R9-01 3 48956324 48956324 C T ARIH2OS Missense_Mutation p.A87T 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.695) TCGA-ZF-A9R9-01 3 49065223 49065223 C G IMPDH2 Missense_Mutation p.G151R 0.29 tolerated(0.06) probably_damaging(0.934) TCGA-ZF-A9R9-01 3 49311573 49311573 C T C3orf62 Silent p.R149R 0.29 TCGA-ZF-A9R9-01 3 50395961 50395961 G A TMEM115 Silent p.L178L 0.17 TCGA-ZF-A9R9-01 3 5213865 5213865 C T ARL8B Nonsense_Mutation p.R79* 0.19 TCGA-ZF-A9R9-01 3 65438995 65438995 G C MAGI1 Missense_Mutation p.S327C 0.37 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R9-01 3 69097557 69097557 A T TMF1 Missense_Mutation p.F100Y 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-ZF-A9R9-01 4 108614971 108614971 C G PAPSS1 Missense_Mutation p.A123P 0.19 deleterious(0) probably_damaging(0.985) TCGA-ZF-A9R9-01 4 125593683 125593683 C T ANKRD50 Missense_Mutation p.R250Q 0.24 deleterious(0.04) possibly_damaging(0.64) TCGA-ZF-A9R9-01 4 140005383 140005384 - A ELF2 Intron 0.18 TCGA-ZF-A9R9-01 4 24572371 24572371 G A DHX15 Nonsense_Mutation p.Q203* 0.52 TCGA-ZF-A9R9-01 4 3208285 3208285 G C HTT Silent p.L1927L 0.47 TCGA-ZF-A9R9-01 4 55140750 55140750 T C PDGFRA Silent p.I537I 0.21 TCGA-ZF-A9R9-01 4 79832595 79832595 G C BMP2K Missense_Mutation p.S965T 0.14 tolerated_low_confidence(0.12) unknown(0) TCGA-ZF-A9R9-01 4 8418102 8418102 C A ACOX3 Intron 0.40 TCGA-ZF-A9R9-01 4 85612877 85612877 C T WDFY3 Silent p.Q3037Q 0.15 TCGA-ZF-A9R9-01 5 112173723 112173723 C T APC Missense_Mutation p.S811L 0.72 benign(0.007) TCGA-ZF-A9R9-01 5 112173884 112173884 C T APC Missense_Mutation p.P865S 0.81 benign(0.001) TCGA-ZF-A9R9-01 5 112175015 112175015 C T APC Nonsense_Mutation p.Q1242* 0.83 TCGA-ZF-A9R9-01 5 112175093 112175093 C G APC Missense_Mutation p.P1268A 0.79 probably_damaging(0.999) TCGA-ZF-A9R9-01 5 112175124 112175124 C T APC Missense_Mutation p.S1278L 0.58 probably_damaging(0.999) TCGA-ZF-A9R9-01 5 112179831 112179831 G T APC 3'UTR 0.63 TCGA-ZF-A9R9-01 5 130799756 130799756 C G RAPGEF6 Missense_Mutation p.D820H 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-A9R9-01 5 140263638 140263638 C T PCDHA13 Silent p.R595R 0.31 TCGA-ZF-A9R9-01 5 170722896 170722896 C T RANBP17 Silent p.F1016F 0.77 TCGA-ZF-A9R9-01 5 176684067 176684068 - A NSD1 Frame_Shift_Ins p.M1628Nfs*20 0.41 TCGA-ZF-A9R9-01 5 177570949 177570949 C T RMND5B Silent p.A178A 0.07 TCGA-ZF-A9R9-01 5 75587667 75587667 C T SV2C Silent p.F441F 0.72 TCGA-ZF-A9R9-01 6 107390671 107390671 G A BEND3 Missense_Mutation p.S575L 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-A9R9-01 6 144783877 144783877 G C UTRN Missense_Mutation p.D981H 0.73 deleterious(0.02) benign(0.013) TCGA-ZF-A9R9-01 6 17826044 17826044 C A KIF13A Nonsense_Mutation p.E581* 0.39 TCGA-ZF-A9R9-01 6 24651054 24651054 G A TDP2 Missense_Mutation p.H351Y 0.36 deleterious(0.03) probably_damaging(0.944) TCGA-ZF-A9R9-01 6 31730897 31730897 G A SAPCD1 Silent p.P22P 0.33 TCGA-ZF-A9R9-01 6 32943231 32943231 A G BRD2 Missense_Mutation p.Y135C 0.45 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9R9-01 6 33239342 33239342 G A VPS52 Intron 0.73 TCGA-ZF-A9R9-01 6 35436835 35436835 C T RPL10A Intron 0.46 TCGA-ZF-A9R9-01 6 35554738 35554738 G A FKBP5 Intron 0.43 TCGA-ZF-A9R9-01 6 39895171 39895171 G A MOCS1 Silent p.F49F 0.23 TCGA-ZF-A9R9-01 6 49976952 49976952 C T DEFB110 Missense_Mutation p.E30K 0.05 tolerated_low_confidence(0.41) benign(0.025) TCGA-ZF-A9R9-01 6 72006210 72006210 G C OGFRL1 Silent p.L164L 0.76 TCGA-ZF-A9R9-01 7 100333356 100333356 C G ZAN Missense_Mutation p.P23A 0.23 possibly_damaging(0.714) TCGA-ZF-A9R9-01 7 100780879 100780879 G A SERPINE1 3'UTR 0.33 TCGA-ZF-A9R9-01 7 113519918 113519918 G C PPP1R3A Nonsense_Mutation p.S410* 0.49 TCGA-ZF-A9R9-01 7 135377133 135377133 C T SLC13A4 Missense_Mutation p.M386I 0.09 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9R9-01 7 142326466 142326466 C G TRBV19 5'UTR 0.17 TCGA-ZF-A9R9-01 7 155094506 155094506 T A INSIG1 Missense_Mutation p.F252I 0.42 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9R9-01 7 6035259 6035259 G T PMS2 Nonsense_Mutation p.S270* 0.18 TCGA-ZF-A9R9-01 7 99693012 99693012 C G MCM7 Missense_Mutation p.M559I 0.59 tolerated(0.56) benign(0.05) TCGA-ZF-A9R9-01 8 105025846 105025846 C G RIMS2 Missense_Mutation p.S1074W 0.10 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-ZF-A9R9-01 8 107726182 107726182 C T OXR1 Missense_Mutation p.S643F 0.14 tolerated(0.17) possibly_damaging(0.568) TCGA-ZF-A9R9-01 8 124359379 124359379 C G ATAD2 Missense_Mutation p.R722T 0.15 deleterious(0) benign(0.004) TCGA-ZF-A9R9-01 8 124360435 124360435 C A ATAD2 Nonsense_Mutation p.E629* 0.08 TCGA-ZF-A9R9-01 8 124818393 124818393 C T FAM91A1 Silent p.L652L 0.10 TCGA-ZF-A9R9-01 8 12583256 12583256 C T LONRF1 Missense_Mutation p.E715K 0.22 deleterious(0.04) benign(0.362) TCGA-ZF-A9R9-01 8 19192363 19192363 A G SH2D4A Missense_Mutation p.I170V 0.13 tolerated(0.61) benign(0.002) TCGA-ZF-A9R9-01 8 23290508 23290508 C T ENTPD4 Silent p.R594R 0.65 TCGA-ZF-A9R9-01 8 56436742 56436742 G A XKR4 Missense_Mutation p.D637N 0.22 tolerated(0.53) probably_damaging(0.989) TCGA-ZF-A9R9-01 8 68107760 68107760 G A CSPP1 Missense_Mutation p.E1200K 0.75 tolerated(0.1) possibly_damaging(0.641) TCGA-ZF-A9R9-01 8 7320373 7320373 G C SPAG11B Missense_Mutation p.Q24E 0.07 tolerated(0.12) benign(0.128) TCGA-ZF-A9R9-01 8 99440966 99440966 C T KCNS2 Silent p.L253L 0.77 TCGA-ZF-A9R9-01 9 114454626 114454626 G A C9orf84 Nonsense_Mutation p.Q1147* 0.51 TCGA-ZF-A9R9-01 9 130688143 130688143 C T PIP5KL1 Intron 0.26 TCGA-ZF-A9R9-01 9 135285814 135285814 C A C9orf171 Silent p.V52V 0.61 TCGA-ZF-A9R9-01 9 2186096 2186096 A T SMARCA2 Missense_Mutation p.I1488F 0.23 possibly_damaging(0.572) TCGA-ZF-A9R9-01 9 35749959 35749959 G C GBA2 5'Flank 0.64 TCGA-ZF-A9R9-01 9 93650066 93650066 C T SYK Silent p.Y539Y 0.18 TCGA-ZF-A9R9-01 X 135095108 135095108 G A SLC9A6 Missense_Mutation p.V348M 0.12 tolerated(0.22) possibly_damaging(0.896) TCGA-ZF-A9R9-01 X 36156472 36156472 C G CHDC2 Missense_Mutation p.S384C 0.36 deleterious(0) probably_damaging(0.968) TCGA-ZF-A9R9-01 X 49962219 49962219 C G AKAP4 Silent p.L50L 0.18 TCGA-ZF-A9R9-01 X 70387129 70387129 C T NLGN3 Silent p.G394G 0.30 TCGA-ZF-A9RC-01 10 100013525 100013525 C G LOXL4 Missense_Mutation p.Q540H 0.15 deleterious(0.03) probably_damaging(0.971) TCGA-ZF-A9RC-01 10 100021874 100021874 G A LOXL4 Missense_Mutation p.S125L 0.22 tolerated(0.06) benign(0.219) TCGA-ZF-A9RC-01 10 101190325 101190325 C G GOT1 5'UTR 0.13 TCGA-ZF-A9RC-01 10 102822540 102822540 C T KAZALD1 Missense_Mutation p.P64L 0.36 tolerated(0.05) possibly_damaging(0.642) TCGA-ZF-A9RC-01 10 106075003 106075003 G A ITPRIP Silent p.L269L 0.17 TCGA-ZF-A9RC-01 10 112266755 112266755 C T DUSP5 Silent p.C197C 0.16 TCGA-ZF-A9RC-01 10 118327344 118327344 C T PNLIP 3'UTR 0.16 TCGA-ZF-A9RC-01 10 120354632 120354632 G A PRLHR Missense_Mutation p.A42V 0.07 tolerated(0.38) benign(0.007) TCGA-ZF-A9RC-01 10 121207647 121207647 G C GRK5 Missense_Mutation p.D427H 0.09 deleterious(0) possibly_damaging(0.862) TCGA-ZF-A9RC-01 10 12191960 12191960 G T SEC61A2 Missense_Mutation p.Q154H 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 10 123670540 123670540 C T ATE1 Missense_Mutation p.G155E 0.49 tolerated(1) benign(0.001) TCGA-ZF-A9RC-01 10 123844383 123844383 G A TACC2 Missense_Mutation p.D790N 0.56 possibly_damaging(0.776) TCGA-ZF-A9RC-01 10 123845750 123845750 G A TACC2 Silent p.Q1245Q 0.07 TCGA-ZF-A9RC-01 10 124036416 124036416 G A BTBD16 Silent p.L43L 0.58 TCGA-ZF-A9RC-01 10 127434457 127434457 G A EDRF1 Silent p.L924L 0.15 TCGA-ZF-A9RC-01 10 127525279 127525279 C T DHX32 Missense_Mutation p.E737K 0.10 deleterious(0.04) benign(0.391) TCGA-ZF-A9RC-01 10 127755328 127755328 C T ADAM12 Silent p.P460P 0.14 TCGA-ZF-A9RC-01 10 134261312 134261312 G A C10orf91 Missense_Mutation p.R62K 0.13 deleterious_low_confidence(0) benign(0.14) TCGA-ZF-A9RC-01 10 135025069 135025069 C G KNDC1 Missense_Mutation p.S1351C 0.16 deleterious(0.01) benign(0.106) TCGA-ZF-A9RC-01 10 135369391 135369391 C G SYCE1 Silent p.A204A 0.11 TCGA-ZF-A9RC-01 10 135440191 135440191 G C FRG2B Missense_Mutation p.T19S 0.04 tolerated(0.13) benign(0.147) TCGA-ZF-A9RC-01 10 18266949 18266949 T G SLC39A12 Missense_Mutation p.N290K 0.17 tolerated(0.39) benign(0.008) TCGA-ZF-A9RC-01 10 26241113 26241113 A T MYO3A Missense_Mutation p.E25V 0.07 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 10 27306626 27306626 C T ANKRD26 Missense_Mutation p.M1437I 0.22 deleterious(0.03) benign(0.442) TCGA-ZF-A9RC-01 10 27459243 27459243 C G MASTL Missense_Mutation p.S452C 0.22 deleterious(0.01) probably_damaging(0.95) TCGA-ZF-A9RC-01 10 28822470 28822470 C T WAC 5'UTR 0.22 TCGA-ZF-A9RC-01 10 28970327 28970327 C T BAMBI Missense_Mutation p.L73F 0.11 tolerated(0.08) benign(0.021) TCGA-ZF-A9RC-01 10 31809156 31809156 T C ZEB1 Missense_Mutation p.V299A 0.13 deleterious(0.03) benign(0.264) TCGA-ZF-A9RC-01 10 43650935 43650935 A C CSGALNACT2 Missense_Mutation p.K113T 0.18 tolerated(0.36) possibly_damaging(0.622) TCGA-ZF-A9RC-01 10 46999684 46999684 T - GPRIN2 Frame_Shift_Del p.L270Cfs*7 0.11 TCGA-ZF-A9RC-01 10 51620337 51620337 C T TIMM23 Missense_Mutation p.R51Q 0.16 tolerated(0.33) benign(0.004) TCGA-ZF-A9RC-01 10 5436344 5436344 G C TUBAL3 Silent p.L159L 0.12 TCGA-ZF-A9RC-01 10 5497048 5497048 G T NET1 Silent p.L388L 0.32 TCGA-ZF-A9RC-01 10 55568601 55568601 C T PCDH15 Missense_Mutation p.E671K 0.27 deleterious_low_confidence(0) unknown(0) TCGA-ZF-A9RC-01 10 5789811 5789811 C T FAM208B Missense_Mutation p.S1476F 0.13 tolerated(0.12) benign(0.048) TCGA-ZF-A9RC-01 10 60994203 60994203 C G PHYHIPL Missense_Mutation p.H82Q 0.11 deleterious(0.01) probably_damaging(0.97) TCGA-ZF-A9RC-01 10 6154212 6154212 C T RBM17 Silent p.F248F 0.08 TCGA-ZF-A9RC-01 10 64967302 64967302 G A JMJD1C Missense_Mutation p.S1376L 0.13 tolerated(0.52) benign(0.008) TCGA-ZF-A9RC-01 10 64974243 64974243 C T JMJD1C Missense_Mutation p.D562N 0.14 tolerated_low_confidence(0.08) benign(0.187) TCGA-ZF-A9RC-01 10 68688050 68688050 G A LRRTM3 Missense_Mutation p.R459Q 0.21 tolerated(0.75) benign(0.042) TCGA-ZF-A9RC-01 10 71129043 71129043 G A HK1 Missense_Mutation p.M218I 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-ZF-A9RC-01 10 7230678 7230678 G A SFMBT2 Silent p.I572I 0.17 TCGA-ZF-A9RC-01 10 72539348 72539348 C T TBATA Splice_Site p.X143_splice 0.12 TCGA-ZF-A9RC-01 10 74908106 74908106 C T ECD Silent p.K323K 0.07 TCGA-ZF-A9RC-01 10 75609037 75609037 G A CAMK2G Silent p.I132I 0.29 TCGA-ZF-A9RC-01 10 76729438 76729438 T G KAT6B Missense_Mutation p.F251V 0.14 probably_damaging(0.999) TCGA-ZF-A9RC-01 10 79552180 79552180 C T DLG5 3'UTR 0.13 TCGA-ZF-A9RC-01 10 8100479 8100479 C T GATA3 Silent p.F151F 0.09 TCGA-ZF-A9RC-01 10 86004864 86004864 C T RGR Silent p.A6A 0.15 TCGA-ZF-A9RC-01 10 91005539 91005539 G A LIPA Silent p.I41I 0.19 TCGA-ZF-A9RC-01 10 95360732 95360732 C T RBP4 Silent p.A18A 0.15 TCGA-ZF-A9RC-01 10 95720144 95720144 T C PIPSL RNA 0.15 TCGA-ZF-A9RC-01 10 98031271 98031271 A C BLNK 5'UTR 0.36 TCGA-ZF-A9RC-01 10 99003769 99003769 G A ARHGAP19 Missense_Mutation p.H381Y 0.24 deleterious(0.01) possibly_damaging(0.61) TCGA-ZF-A9RC-01 10 99139129 99139129 G A RRP12 Silent p.I573I 0.11 TCGA-ZF-A9RC-01 10 99216591 99216591 G A ZDHHC16 Missense_Mutation p.M359I 0.16 tolerated(0.37) benign(0) TCGA-ZF-A9RC-01 11 1017272 1017272 G A MUC6 Silent p.F1843F 0.06 TCGA-ZF-A9RC-01 11 108180963 108180963 T C ATM Missense_Mutation p.S1947P 0.28 deleterious(0.03) probably_damaging(0.947) TCGA-ZF-A9RC-01 11 1083807 1083807 G A MUC2 Missense_Mutation p.R780Q 0.12 benign(0.067) TCGA-ZF-A9RC-01 11 108381114 108381114 G C EXPH5 Nonsense_Mutation p.S1707* 0.06 TCGA-ZF-A9RC-01 11 117975521 117975521 G A TMPRSS4 Silent p.Q142Q 0.07 TCGA-ZF-A9RC-01 11 118373680 118373680 C T KMT2A Missense_Mutation p.S2358F 0.11 possibly_damaging(0.73) TCGA-ZF-A9RC-01 11 119044627 119044627 G A NLRX1 Silent p.L223L 0.20 TCGA-ZF-A9RC-01 11 124502210 124502210 G C TBRG1 3'UTR 0.27 TCGA-ZF-A9RC-01 11 1279595 1279595 G A MUC5B Missense_Mutation p.G5531R 0.12 unknown(0) TCGA-ZF-A9RC-01 11 128850508 128850508 C T ARHGAP32 Missense_Mutation p.G625E 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RC-01 11 129246048 129246048 G A BARX2 Missense_Mutation p.E40K 0.15 tolerated(0.15) possibly_damaging(0.751) TCGA-ZF-A9RC-01 11 129742843 129742843 G C NFRKB Missense_Mutation p.S925C 0.06 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-ZF-A9RC-01 11 129992404 129992404 C T APLP2 Silent p.V306V 0.09 TCGA-ZF-A9RC-01 11 14856593 14856593 C T PDE3B Missense_Mutation p.P758S 0.17 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9RC-01 11 1778686 1778686 A G CTSD Missense_Mutation p.I191T 0.26 deleterious(0.01) benign(0.175) TCGA-ZF-A9RC-01 11 18254081 18254081 C T SAA4 Splice_Site p.X31_splice 0.15 TCGA-ZF-A9RC-01 11 1858238 1858238 G A SYT8 Missense_Mutation p.R295K 0.18 tolerated(1) benign(0.035) TCGA-ZF-A9RC-01 11 27680121 27680121 C T BDNF Silent p.V79V 0.14 TCGA-ZF-A9RC-01 11 27721058 27721058 G A BDNF Intron 0.17 TCGA-ZF-A9RC-01 11 33763481 33763481 G A FBXO3 Silent p.R463R 0.26 TCGA-ZF-A9RC-01 11 33792317 33792317 C T FBXO3 Missense_Mutation p.R55K 0.26 tolerated(0.81) possibly_damaging(0.578) TCGA-ZF-A9RC-01 11 45246182 45246182 C T PRDM11 Missense_Mutation p.S386L 0.18 tolerated_low_confidence(0.38) benign(0.002) TCGA-ZF-A9RC-01 11 47296184 47296184 G A MADD Missense_Mutation p.E45K 0.07 deleterious(0) benign(0.278) TCGA-ZF-A9RC-01 11 47834905 47834905 C G NUP160 Missense_Mutation p.E583D 0.10 tolerated(0.07) benign(0.005) TCGA-ZF-A9RC-01 11 48285929 48285929 G T OR4X1 Missense_Mutation p.D173Y 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-ZF-A9RC-01 11 4842691 4842691 T G OR51F2 Missense_Mutation p.F26V 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-ZF-A9RC-01 11 556066 556066 G C C11orf35 Missense_Mutation p.S436W 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-ZF-A9RC-01 11 55761855 55761855 C T OR5F1 Missense_Mutation p.A83T 0.10 tolerated(0.2) benign(0.006) TCGA-ZF-A9RC-01 11 57799168 57799168 C T OR6Q1 Silent p.H248H 0.17 TCGA-ZF-A9RC-01 11 58972306 58972306 A G DTX4 Missense_Mutation p.N595S 0.20 tolerated(0.21) benign(0.102) TCGA-ZF-A9RC-01 11 5906339 5906339 A G OR52E4 Missense_Mutation p.I273V 0.13 tolerated(0.28) benign(0.011) TCGA-ZF-A9RC-01 11 60610027 60610027 G A CCDC86 Missense_Mutation p.E144K 0.10 tolerated(0.09) benign(0.054) TCGA-ZF-A9RC-01 11 60665373 60665374 - C PRPF19 Frame_Shift_Ins p.T455Hfs*21 0.08 TCGA-ZF-A9RC-01 11 61076542 61076542 T C DDB1 Silent p.L858L 0.07 TCGA-ZF-A9RC-01 11 63525627 63525627 G A RTN3 Splice_Site p.X1018_splice 0.11 TCGA-ZF-A9RC-01 11 64597298 64597298 G A CDC42BPG Silent p.L1204L 0.50 TCGA-ZF-A9RC-01 11 65063393 65063393 G T POLA2 Missense_Mutation p.V527F 0.13 tolerated(0.47) benign(0.148) TCGA-ZF-A9RC-01 11 65361044 65361044 G A KCNK7 Silent p.F207F 0.22 TCGA-ZF-A9RC-01 11 66039807 66039807 G A RAB1B Intron 0.15 TCGA-ZF-A9RC-01 11 6621346 6621346 C A RRP8 3'UTR 0.17 TCGA-ZF-A9RC-01 11 66358063 66358063 C T CCDC87 Silent p.K808K 0.08 TCGA-ZF-A9RC-01 11 66436538 66436538 C T RBM4B Missense_Mutation p.D213N 0.07 tolerated(0.27) benign(0.003) TCGA-ZF-A9RC-01 11 67074372 67074372 G A SSH3 Missense_Mutation p.E135K 0.13 deleterious(0.04) possibly_damaging(0.636) TCGA-ZF-A9RC-01 11 67077339 67077339 G A SSH3 Missense_Mutation p.E437K 0.19 tolerated(0.06) possibly_damaging(0.896) TCGA-ZF-A9RC-01 11 67203345 67203345 G A PTPRCAP Silent p.V160V 0.40 TCGA-ZF-A9RC-01 11 6816752 6816752 A C OR6A2 Missense_Mutation p.F63C 0.12 deleterious(0) probably_damaging(0.968) TCGA-ZF-A9RC-01 11 68748144 68748144 C T MRGPRD Silent p.L104L 0.20 TCGA-ZF-A9RC-01 11 74422010 74422010 C T CHRDL2 Missense_Mutation p.A106T 0.19 tolerated(0.17) probably_damaging(0.967) TCGA-ZF-A9RC-01 11 75509419 75509419 C G DGAT2 Silent p.L319L 0.15 TCGA-ZF-A9RC-01 11 78381463 78381463 C T TENM4 Missense_Mutation p.R1976K 0.15 tolerated(0.1) possibly_damaging(0.748) TCGA-ZF-A9RC-01 11 82877677 82877677 G A PCF11 Missense_Mutation p.E580K 0.22 tolerated(0.1) benign(0.083) TCGA-ZF-A9RC-01 11 82924405 82924405 A T ANKRD42 Intron 0.15 TCGA-ZF-A9RC-01 11 85374829 85374829 G A CREBZF 3'UTR 0.13 TCGA-ZF-A9RC-01 11 9192205 9192205 C T DENND5A Missense_Mutation p.D676N 0.12 deleterious(0.02) benign(0.285) TCGA-ZF-A9RC-01 11 9810700 9810700 C T SBF2 Missense_Mutation p.D1630N 0.32 tolerated(1) benign(0.001) TCGA-ZF-A9RC-01 12 101551122 101551122 G A SLC5A8 Missense_Mutation p.P590S 0.13 tolerated(0.09) possibly_damaging(0.902) TCGA-ZF-A9RC-01 12 102147193 102147193 C T GNPTAB Missense_Mutation p.E1187K 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-ZF-A9RC-01 12 104341429 104341429 G C HSP90B1 Missense_Mutation p.D801H 0.32 deleterious(0) unknown(0) TCGA-ZF-A9RC-01 12 107371459 107371459 T G MTERFD3 Missense_Mutation p.K345T 0.05 deleterious(0.01) possibly_damaging(0.507) TCGA-ZF-A9RC-01 12 10774501 10774501 C T STYK1 Silent p.K346K 0.14 TCGA-ZF-A9RC-01 12 109954657 109954657 C T UBE3B Missense_Mutation p.H682Y 0.16 deleterious(0.02) benign(0.046) TCGA-ZF-A9RC-01 12 110784080 110784080 C T ATP2A2 Silent p.L978L 0.08 TCGA-ZF-A9RC-01 12 110906028 110906028 C G GPN3 Intron 0.15 TCGA-ZF-A9RC-01 12 111052137 111052137 G A TCTN1 Silent p.S50S 0.44 TCGA-ZF-A9RC-01 12 113416527 113416527 G A OAS2 Silent p.V38V 0.12 TCGA-ZF-A9RC-01 12 118467591 118467591 C T RFC5 Missense_Mutation p.S296L 0.12 tolerated(0.3) benign(0.008) TCGA-ZF-A9RC-01 12 120582452 120582452 A G GCN1L1 Silent p.C1781C 0.07 TCGA-ZF-A9RC-01 12 121205312 121205312 G A SPPL3 Silent p.D286D 0.16 TCGA-ZF-A9RC-01 12 121605309 121605309 G A P2RX7 Missense_Mutation p.E255K 0.12 deleterious(0.01) possibly_damaging(0.896) TCGA-ZF-A9RC-01 12 12300420 12300420 G A LRP6 Missense_Mutation p.R1093W 0.06 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 12 123214089 123214089 G A HCAR1 Silent p.F266F 0.06 TCGA-ZF-A9RC-01 12 124163768 124163768 C G TCTN2 Missense_Mutation p.Q166E 0.07 deleterious(0.05) benign(0.025) TCGA-ZF-A9RC-01 12 124179519 124179519 G A TCTN2 Silent p.Q410Q 0.27 TCGA-ZF-A9RC-01 12 124408909 124408909 C A DNAH10 Nonsense_Mutation p.S3781* 0.18 TCGA-ZF-A9RC-01 12 125397692 125397692 G A UBC Missense_Mutation p.S209F 0.13 deleterious(0) possibly_damaging(0.706) TCGA-ZF-A9RC-01 12 12588635 12588635 C T LOH12CR1 Silent p.L92L 0.08 TCGA-ZF-A9RC-01 12 130884302 130884302 A C RIMBP2 Silent p.P1018P 0.33 TCGA-ZF-A9RC-01 12 131456122 131456122 G A GPR133 Missense_Mutation p.E103K 0.21 tolerated_low_confidence(0.06) benign(0.12) TCGA-ZF-A9RC-01 12 132404621 132404621 C G ULK1 Silent p.L967L 0.18 TCGA-ZF-A9RC-01 12 133218261 133218261 C T POLE Missense_Mutation p.E1784K 0.17 deleterious(0) probably_damaging(0.96) TCGA-ZF-A9RC-01 12 133252082 133252082 T A POLE Silent p.A376A 0.15 TCGA-ZF-A9RC-01 12 14577324 14577324 C A ATF7IP Missense_Mutation p.P159T 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-ZF-A9RC-01 12 18435275 18435275 A T PIK3C2G Missense_Mutation p.N87I 0.09 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-ZF-A9RC-01 12 18837130 18837130 G C PLCZ1 Missense_Mutation p.Q559E 0.08 tolerated(0.29) benign(0.052) TCGA-ZF-A9RC-01 12 20769167 20769167 C A PDE3A Missense_Mutation p.L425M 0.16 deleterious(0.03) probably_damaging(0.977) TCGA-ZF-A9RC-01 12 21681967 21681967 A T C12orf39 Missense_Mutation p.I81F 0.12 deleterious(0.03) benign(0.055) TCGA-ZF-A9RC-01 12 23689501 23689501 T A SOX5 Missense_Mutation p.Y625F 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-ZF-A9RC-01 12 23689550 23689550 G C SOX5 Missense_Mutation p.Q609E 0.04 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9RC-01 12 25272112 25272112 C T CASC1 Missense_Mutation p.E455K 0.11 tolerated(0.06) probably_damaging(0.918) TCGA-ZF-A9RC-01 12 2706608 2706608 A C CACNA1C Silent p.L953L 0.28 TCGA-ZF-A9RC-01 12 39763635 39763635 G C KIF21A Missense_Mutation p.R116G 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 12 44180602 44180602 C T IRAK4 3'UTR 0.17 TCGA-ZF-A9RC-01 12 46355560 46355560 G A SCAF11 Silent p.L48L 0.16 TCGA-ZF-A9RC-01 12 49430970 49430970 C A KMT2D Missense_Mutation p.C3390F 0.36 probably_damaging(0.982) TCGA-ZF-A9RC-01 12 49491764 49491764 G A LMBR1L Silent p.F455F 0.22 TCGA-ZF-A9RC-01 12 50357877 50357877 C G AQP5 Missense_Mutation p.I177M 0.12 tolerated(0.13) probably_damaging(0.986) TCGA-ZF-A9RC-01 12 52566060 52566060 T C KRT80 Missense_Mutation p.Q367R 0.17 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9RC-01 12 52585445 52585445 T G KRT80 Missense_Mutation p.N81T 0.18 tolerated(1) benign(0.002) TCGA-ZF-A9RC-01 12 52790748 52790748 G A KRT82 Silent p.L329L 0.46 TCGA-ZF-A9RC-01 12 52797586 52797586 G A KRT82 Silent p.I173I 0.18 TCGA-ZF-A9RC-01 12 52827928 52827928 C T KRT75 Missense_Mutation p.G54E 0.12 deleterious(0.01) possibly_damaging(0.575) TCGA-ZF-A9RC-01 12 53400106 53400106 C T EIF4B 5'UTR 0.15 TCGA-ZF-A9RC-01 12 53605598 53605598 A G RARG Silent p.P409P 0.17 TCGA-ZF-A9RC-01 12 53775907 53775907 C T SP1 Missense_Mutation p.S59F 0.17 deleterious(0) possibly_damaging(0.831) TCGA-ZF-A9RC-01 12 56965591 56965591 G C RBMS2 Missense_Mutation p.R165P 0.08 deleterious(0.01) benign(0.155) TCGA-ZF-A9RC-01 12 57037645 57037645 G A ATP5B Missense_Mutation p.P195S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.569) TCGA-ZF-A9RC-01 12 57493798 57493798 G A STAT6 Missense_Mutation p.R530W 0.20 deleterious(0) possibly_damaging(0.842) TCGA-ZF-A9RC-01 12 57569486 57569486 T G LRP1 Missense_Mutation p.L1264R 0.16 benign(0.157) TCGA-ZF-A9RC-01 12 57577255 57577255 C T LRP1 Missense_Mutation p.S1919F 0.15 probably_damaging(0.998) TCGA-ZF-A9RC-01 12 59270301 59270301 G A LRIG3 Missense_Mutation p.S874L 0.15 tolerated(0.07) possibly_damaging(0.728) TCGA-ZF-A9RC-01 12 6128366 6128366 C T VWF Silent p.K1406K 0.20 TCGA-ZF-A9RC-01 12 6437350 6437350 G A PLEKHG6 3'UTR 0.17 TCGA-ZF-A9RC-01 12 66839203 66839203 G A GRIP1 Silent p.V428V 0.12 TCGA-ZF-A9RC-01 12 6776900 6776900 C T ZNF384 Missense_Mutation p.E572K 0.18 deleterious(0) benign(0.292) TCGA-ZF-A9RC-01 12 68725002 68725002 C T MDM1 Splice_Site p.X7_splice 0.21 TCGA-ZF-A9RC-01 12 6979432 6979432 C T TPI1 Missense_Mutation p.S249F 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 12 70049497 70049497 C T BEST3 Silent p.L399L 0.91 TCGA-ZF-A9RC-01 12 70928396 70928396 G A PTPRB Silent p.H2080H 0.85 TCGA-ZF-A9RC-01 12 71286745 71286745 C T PTPRR Missense_Mutation p.G24E 0.04 deleterious_low_confidence(0.01) benign(0.091) TCGA-ZF-A9RC-01 12 73015432 73015432 G T TRHDE Missense_Mutation p.R814L 0.03 tolerated(0.43) probably_damaging(0.943) TCGA-ZF-A9RC-01 12 75816709 75816709 G A GLIPR1L2 Missense_Mutation p.E204K 0.27 tolerated(1) benign(0.001) TCGA-ZF-A9RC-01 12 78513626 78513626 C T NAV3 Missense_Mutation p.S1217F 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 12 7942195 7942195 C T NANOG 5'UTR 0.08 TCGA-ZF-A9RC-01 12 79842878 79842878 G A SYT1 Missense_Mutation p.D415N 0.14 tolerated(0.08) benign(0.02) TCGA-ZF-A9RC-01 12 81536974 81536974 C T ACSS3 Missense_Mutation p.S290L 0.33 deleterious(0) probably_damaging(0.926) TCGA-ZF-A9RC-01 12 88442152 88442152 G A C12orf29 Missense_Mutation p.D311N 0.11 tolerated(0.82) benign(0.074) TCGA-ZF-A9RC-01 12 8995751 8995751 T C A2ML1 Silent p.L424L 0.07 TCGA-ZF-A9RC-01 12 96356175 96356175 G A AMDHD1 Missense_Mutation p.E286K 0.16 tolerated(0.19) benign(0.38) TCGA-ZF-A9RC-01 13 100153956 100153956 G A TM9SF2 Silent p.R32R 0.11 TCGA-ZF-A9RC-01 13 109707788 109707788 C T MYO16 Silent p.F1038F 0.16 TCGA-ZF-A9RC-01 13 113825987 113825987 G T PROZ Silent p.A279A 0.22 TCGA-ZF-A9RC-01 13 114077060 114077060 C T ADPRHL1 3'UTR 0.27 TCGA-ZF-A9RC-01 13 25266672 25266672 A G ATP12A Missense_Mutation p.K398E 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 13 25828053 25828053 G A MTMR6 Nonsense_Mutation p.Q399* 0.08 TCGA-ZF-A9RC-01 13 26923311 26923311 G A CDK8 Missense_Mutation p.D103N 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 13 28851387 28851387 T A PAN3 Missense_Mutation p.I688K 0.12 tolerated(0.19) benign(0.433) TCGA-ZF-A9RC-01 13 31712594 31712594 G A HSPH1 Missense_Mutation p.L774F 0.10 tolerated(0.64) benign(0.002) TCGA-ZF-A9RC-01 13 32776563 32776563 G A FRY Missense_Mutation p.G1306E 0.09 tolerated(0.16) possibly_damaging(0.83) TCGA-ZF-A9RC-01 13 32828505 32828505 C T FRY Silent p.L2464L 0.21 TCGA-ZF-A9RC-01 13 32911628 32911628 G A BRCA2 Missense_Mutation p.E1046K 0.13 deleterious(0.02) possibly_damaging(0.821) TCGA-ZF-A9RC-01 13 33016947 33016947 G A N4BP2L2 Missense_Mutation p.S576F 0.12 deleterious(0.02) possibly_damaging(0.729) TCGA-ZF-A9RC-01 13 36900832 36900832 T C SPG20 Missense_Mutation p.K390E 0.12 tolerated(0.74) benign(0.003) TCGA-ZF-A9RC-01 13 41345190 41345190 G A MRPS31 Missense_Mutation p.A28V 0.21 tolerated_low_confidence(0.31) benign(0.049) TCGA-ZF-A9RC-01 13 42764540 42764540 T G DGKH Silent p.V638V 0.07 TCGA-ZF-A9RC-01 13 46054407 46054407 A G COG3 Silent p.E177E 0.12 TCGA-ZF-A9RC-01 13 46559704 46559704 C T ZC3H13 Missense_Mutation p.R483K 0.06 unknown(0) TCGA-ZF-A9RC-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.20 TCGA-ZF-A9RC-01 13 48985729 48985729 G A LPAR6 Silent p.L277L 0.11 TCGA-ZF-A9RC-01 13 50102652 50102652 G C PHF11 Missense_Mutation p.E283Q 0.20 tolerated(0.11) benign(0.196) TCGA-ZF-A9RC-01 13 50125590 50125590 G A RCBTB1 Silent p.Y242Y 0.15 TCGA-ZF-A9RC-01 13 51969472 51969472 C T INTS6 Missense_Mutation p.D193N 0.10 tolerated(0.17) possibly_damaging(0.797) TCGA-ZF-A9RC-01 13 72014716 72014716 G A DACH1 3'UTR 0.08 TCGA-ZF-A9RC-01 13 76141429 76141429 G A UCHL3 Missense_Mutation p.R136K 0.26 tolerated(1) benign(0) TCGA-ZF-A9RC-01 13 77743843 77743843 T C MYCBP2 Missense_Mutation p.D1896G 0.13 probably_damaging(0.914) TCGA-ZF-A9RC-01 13 86368042 86368042 C T SLITRK6 3'UTR 0.32 TCGA-ZF-A9RC-01 13 88329002 88329002 C T SLITRK5 Silent p.F453F 0.10 TCGA-ZF-A9RC-01 14 101201203 101201203 C T DLK1 Silent p.F374F 0.13 TCGA-ZF-A9RC-01 14 102028035 102028035 C G DIO3 Missense_Mutation p.R68G 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-ZF-A9RC-01 14 102483482 102483482 G A DYNC1H1 Missense_Mutation p.D2636N 0.20 probably_damaging(0.993) TCGA-ZF-A9RC-01 14 102502930 102502930 G A DYNC1H1 Missense_Mutation p.R3620K 0.16 benign(0.3) TCGA-ZF-A9RC-01 14 102904540 102904540 C A TECPR2 Nonsense_Mutation p.S859* 0.16 TCGA-ZF-A9RC-01 14 105414024 105414024 G C AHNAK2 Silent p.V2588V 0.20 TCGA-ZF-A9RC-01 14 21464929 21464929 C T METTL17 Missense_Mutation p.H442Y 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-ZF-A9RC-01 14 21469191 21469191 C T SLC39A2 Missense_Mutation p.P128L 0.12 tolerated(0.09) possibly_damaging(0.529) TCGA-ZF-A9RC-01 14 22090709 22090709 C T TRAV1-1 Silent p.C105C 0.16 TCGA-ZF-A9RC-01 14 23282502 23282502 C T SLC7A7 Missense_Mutation p.E36K 0.16 tolerated(0.36) benign(0.134) TCGA-ZF-A9RC-01 14 24029581 24029581 C A AP1G2 Silent p.L680L 0.25 TCGA-ZF-A9RC-01 14 24771532 24771532 G A NOP9 Missense_Mutation p.E349K 0.22 tolerated(1) benign(0.002) TCGA-ZF-A9RC-01 14 25100188 25100188 C T GZMB 3'UTR 0.15 TCGA-ZF-A9RC-01 14 31642624 31642624 C T HECTD1 Silent p.L298L 0.19 TCGA-ZF-A9RC-01 14 35243628 35243628 G A BAZ1A Nonsense_Mutation p.Q968* 0.19 TCGA-ZF-A9RC-01 14 35593316 35593316 G - KIAA0391 Frame_Shift_Del p.G289Efs*4 0.16 TCGA-ZF-A9RC-01 14 45564560 45564560 G A PRPF39 Missense_Mutation p.E40K 0.22 tolerated(0.09) benign(0.163) TCGA-ZF-A9RC-01 14 52948972 52948972 T C TXNDC16 Missense_Mutation p.I430V 0.18 tolerated(0.84) benign(0.006) TCGA-ZF-A9RC-01 14 55852747 55852747 T G ATG14 Missense_Mutation p.Q159H 0.10 deleterious(0.01) possibly_damaging(0.818) TCGA-ZF-A9RC-01 14 57736066 57736066 G A AP5M1 Missense_Mutation p.E12K 0.08 tolerated(0.4) benign(0.014) TCGA-ZF-A9RC-01 14 60581897 60581897 T C PCNXL4 Missense_Mutation p.Y125H 0.18 tolerated(0.35) benign(0.002) TCGA-ZF-A9RC-01 14 64497937 64497937 C T SYNE2 Silent p.L2361L 0.18 TCGA-ZF-A9RC-01 14 64604625 64604625 G A SYNE2 Missense_Mutation p.E4923K 0.14 probably_damaging(0.999) TCGA-ZF-A9RC-01 14 65053915 65053915 T G PPP1R36 Missense_Mutation p.F239V 0.07 deleterious(0) possibly_damaging(0.676) TCGA-ZF-A9RC-01 14 69847186 69847186 T C ERH 3'UTR 0.31 TCGA-ZF-A9RC-01 14 70883644 70883644 C T SYNJ2BP Missense_Mutation p.E13K 0.15 tolerated(0.23) benign(0.056) TCGA-ZF-A9RC-01 14 71206727 71206727 C T MAP3K9 Intron 0.17 TCGA-ZF-A9RC-01 14 74961563 74961563 G A ISCA2 Missense_Mutation p.D109N 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 14 75230877 75230877 C T YLPM1 Nonsense_Mutation p.Q229* 0.13 TCGA-ZF-A9RC-01 14 77239638 77239638 G A VASH1 Intron 0.29 TCGA-ZF-A9RC-01 14 77872354 77872354 C T NOXRED1 Silent p.V269V 0.21 TCGA-ZF-A9RC-01 14 78063531 78063531 T C SPTLC2 Missense_Mutation p.K109E 0.22 tolerated(0.13) benign(0.141) TCGA-ZF-A9RC-01 14 91928498 91928498 C T SMEK1 Missense_Mutation p.E674K 0.26 tolerated(0.39) benign(0.046) TCGA-ZF-A9RC-01 14 91948276 91948276 C T SMEK1 Missense_Mutation p.E187K 0.07 tolerated(0.09) benign(0.4) TCGA-ZF-A9RC-01 14 94732158 94732158 T G PPP4R4 Missense_Mutation p.I771S 0.07 tolerated_low_confidence(0.39) benign(0.003) TCGA-ZF-A9RC-01 14 95662842 95662842 G A CLMN Missense_Mutation p.P901S 0.08 deleterious(0.02) possibly_damaging(0.634) TCGA-ZF-A9RC-01 14 95903307 95903307 T C SYNE3 Silent p.L796L 0.14 TCGA-ZF-A9RC-01 15 22332511 22332511 T C RP11-69H14.6 RNA 0.18 TCGA-ZF-A9RC-01 15 26806166 26806166 G C GABRB3 Missense_Mutation p.F331L 0.12 deleterious(0.04) benign(0.378) TCGA-ZF-A9RC-01 15 30008930 30008930 C T TJP1 Missense_Mutation p.D1363N 0.11 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-ZF-A9RC-01 15 34394951 34394951 G A PGBD4 Missense_Mutation p.M73I 0.18 tolerated_low_confidence(0.47) benign(0) TCGA-ZF-A9RC-01 15 34647309 34647309 G A NUTM1 Missense_Mutation p.E456K 0.12 deleterious(0) probably_damaging(0.946) TCGA-ZF-A9RC-01 15 41011012 41011012 G A RAD51 Missense_Mutation p.D150N 0.14 tolerated(0.14) benign(0.049) TCGA-ZF-A9RC-01 15 41146090 41146090 G A SPINT1 Silent p.L308L 0.25 TCGA-ZF-A9RC-01 15 44116865 44116865 C T MFAP1 5'UTR 0.33 TCGA-ZF-A9RC-01 15 48789562 48789562 C T FBN1 Missense_Mutation p.D732N 0.12 possibly_damaging(0.886) TCGA-ZF-A9RC-01 15 49170827 49170827 G A EID1 Missense_Mutation p.E152K 0.33 tolerated(0.07) probably_damaging(0.994) TCGA-ZF-A9RC-01 15 51749535 51749535 C G DMXL2 Missense_Mutation p.G2755A 0.38 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 15 52252196 52252196 G A LEO1 Missense_Mutation p.P354S 0.10 tolerated(0.1) benign(0.153) TCGA-ZF-A9RC-01 15 52356937 52356937 A G MAPK6 Missense_Mutation p.K636E 0.27 deleterious_low_confidence(0) benign(0.002) TCGA-ZF-A9RC-01 15 53998239 53998239 C T WDR72 Missense_Mutation p.M329I 0.30 tolerated(0.13) benign(0.005) TCGA-ZF-A9RC-01 15 54306688 54306688 G A UNC13C Missense_Mutation p.D530N 0.19 tolerated_low_confidence(0.07) benign(0.092) TCGA-ZF-A9RC-01 15 59499894 59499894 G C LDHAL6B Missense_Mutation p.G252A 0.21 deleterious(0.02) probably_damaging(0.964) TCGA-ZF-A9RC-01 15 62243223 62243223 T G VPS13C Missense_Mutation p.D1486A 0.22 deleterious(0.01) possibly_damaging(0.682) TCGA-ZF-A9RC-01 15 62939627 62939627 G A TLN2 Missense_Mutation p.E40K 0.19 deleterious(0) possibly_damaging(0.81) TCGA-ZF-A9RC-01 15 63554899 63554899 T C RAB8B Silent p.F163F 0.19 TCGA-ZF-A9RC-01 15 64005028 64005028 C T HERC1 Silent p.S1510S 0.19 TCGA-ZF-A9RC-01 15 66821260 66821261 - T ZWILCH Frame_Shift_Ins p.A349Cfs*2 0.08 TCGA-ZF-A9RC-01 15 66840870 66840870 G A LCTL Silent p.I554I 0.13 TCGA-ZF-A9RC-01 15 68643048 68643048 C T ITGA11 Missense_Mutation p.D323N 0.10 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9RC-01 15 72143604 72143604 G A MYO9A Missense_Mutation p.H2191Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 15 75132945 75132945 C T ULK3 Silent p.E169E 0.35 TCGA-ZF-A9RC-01 15 75189912 75189912 G A MPI Silent p.L371L 0.08 TCGA-ZF-A9RC-01 15 75195039 75195039 G A FAM219B Missense_Mutation p.P173L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RC-01 15 77471194 77471194 T C PEAK1 Silent p.L1025L 0.21 TCGA-ZF-A9RC-01 15 78393815 78393815 C T SH2D7 Missense_Mutation p.S407L 0.25 tolerated(0.27) benign(0.006) TCGA-ZF-A9RC-01 15 80872851 80872851 G T ARNT2 Missense_Mutation p.Q571H 0.19 tolerated(0.07) possibly_damaging(0.781) TCGA-ZF-A9RC-01 15 83674372 83674372 T C C15orf40 Intron 0.23 TCGA-ZF-A9RC-01 15 85259405 85259405 C T SEC11A 5'UTR 0.38 TCGA-ZF-A9RC-01 15 91020346 91020346 C T IQGAP1 Silent p.N996N 0.16 TCGA-ZF-A9RC-01 16 10862967 10862967 A C NUBP1 3'UTR 0.08 TCGA-ZF-A9RC-01 16 15100393 15100393 C G PDXDC1 Missense_Mutation p.L178V 0.10 tolerated(0.28) benign(0.014) TCGA-ZF-A9RC-01 16 1510488 1510488 G A CLCN7 Silent p.S175S 0.24 TCGA-ZF-A9RC-01 16 15718959 15718959 G A KIAA0430 Silent p.V675V 0.12 TCGA-ZF-A9RC-01 16 17211799 17211799 C T XYLT1 Missense_Mutation p.R754H 0.12 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 16 1872916 1872916 C T HAGH Missense_Mutation p.D67N 0.12 deleterious(0.04) possibly_damaging(0.811) TCGA-ZF-A9RC-01 16 1877386 1877386 C T FAHD1 Silent p.Y52Y 0.10 TCGA-ZF-A9RC-01 16 19126540 19126540 C T ITPRIPL2 Missense_Mutation p.R253C 0.23 deleterious(0) probably_damaging(0.973) TCGA-ZF-A9RC-01 16 19547277 19547277 A G CCP110 Missense_Mutation p.N96D 0.14 tolerated(0.13) benign(0.056) TCGA-ZF-A9RC-01 16 21212805 21212805 C T ZP2 Missense_Mutation p.E527K 0.15 deleterious(0) probably_damaging(0.974) TCGA-ZF-A9RC-01 16 21747660 21747660 C T OTOA Nonsense_Mutation p.Q794* 0.21 TCGA-ZF-A9RC-01 16 2263945 2263945 G A PGP Silent p.I250I 0.12 TCGA-ZF-A9RC-01 16 23481470 23481470 G A GGA2 Silent p.L489L 0.07 TCGA-ZF-A9RC-01 16 24816096 24816096 C T TNRC6A Missense_Mutation p.S1303L 0.14 deleterious(0.04) benign(0.004) TCGA-ZF-A9RC-01 16 24818054 24818054 G A TNRC6A Missense_Mutation p.E1497K 0.23 deleterious(0.04) possibly_damaging(0.601) TCGA-ZF-A9RC-01 16 2488121 2488121 C G CCNF Missense_Mutation p.F197L 0.15 tolerated(0.15) benign(0.154) TCGA-ZF-A9RC-01 16 27246532 27246532 G A NSMCE1 Silent p.V75V 0.23 TCGA-ZF-A9RC-01 16 29675230 29675230 C T SPN Nonsense_Mutation p.Q61* 0.10 TCGA-ZF-A9RC-01 16 29810953 29810953 C T KIF22 Missense_Mutation p.S332F 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 16 29819575 29819575 C T MAZ Silent p.V356V 0.20 TCGA-ZF-A9RC-01 16 30199780 30199780 C G CORO1A Silent p.L388L 0.18 TCGA-ZF-A9RC-01 16 30593976 30593976 C T ZNF785 Missense_Mutation p.V375M 0.20 tolerated(0.11) benign(0.05) TCGA-ZF-A9RC-01 16 30594761 30594761 G C ZNF785 Missense_Mutation p.S113C 0.13 tolerated(0.09) possibly_damaging(0.869) TCGA-ZF-A9RC-01 16 30768762 30768762 C T C16orf93 3'Flank 0.06 TCGA-ZF-A9RC-01 16 31539925 31539925 G A AHSP Silent p.L74L 0.20 TCGA-ZF-A9RC-01 16 3432908 3432908 G C ZSCAN32 Missense_Mutation p.Q468E 0.10 tolerated(0.06) benign(0.011) TCGA-ZF-A9RC-01 16 3490853 3490853 G A ZNF597 Silent p.L38L 0.09 TCGA-ZF-A9RC-01 16 4933529 4933529 C T PPL Silent p.V1709V 0.11 TCGA-ZF-A9RC-01 16 49670734 49670734 G T ZNF423 Missense_Mutation p.P777T 0.11 tolerated(0.3) benign(0.119) TCGA-ZF-A9RC-01 16 66603842 66603842 C T CMTM1 Missense_Mutation p.L146F 0.06 deleterious(0.01) possibly_damaging(0.596) TCGA-ZF-A9RC-01 16 66651150 66651150 A T CMTM4 3'UTR 0.10 TCGA-ZF-A9RC-01 16 66766213 66766213 T C DYNC1LI2 Intron 0.14 TCGA-ZF-A9RC-01 16 66918706 66918706 G A PDP2 Missense_Mutation p.M173I 0.33 tolerated(0.84) benign(0.001) TCGA-ZF-A9RC-01 16 66945206 66945206 G A CDH16 Silent p.V601V 0.31 TCGA-ZF-A9RC-01 16 67236305 67236305 G C ELMO3 Missense_Mutation p.E476Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 16 67314370 67314370 G A PLEKHG4 Silent p.L141L 0.13 TCGA-ZF-A9RC-01 16 67314896 67314896 G A PLEKHG4 Missense_Mutation p.R236Q 0.18 tolerated(0.19) benign(0.038) TCGA-ZF-A9RC-01 16 67315056 67315056 C T PLEKHG4 Missense_Mutation p.S261F 0.10 deleterious(0.04) possibly_damaging(0.615) TCGA-ZF-A9RC-01 16 67316218 67316218 G A PLEKHG4 Missense_Mutation p.E407K 0.14 deleterious(0.02) benign(0.031) TCGA-ZF-A9RC-01 16 67862148 67862148 G A CENPT 3'UTR 0.28 TCGA-ZF-A9RC-01 16 67862149 67862149 G A CENPT 3'UTR 0.28 TCGA-ZF-A9RC-01 16 67863736 67863736 G A CENPT Missense_Mutation p.S373F 0.06 tolerated(0.06) benign(0.013) TCGA-ZF-A9RC-01 16 67968468 67968468 C G PSMB10 Missense_Mutation p.E273Q 0.37 deleterious(0.02) benign(0.071) TCGA-ZF-A9RC-01 16 67969552 67969552 C G PSMB10 Silent p.L144L 0.42 TCGA-ZF-A9RC-01 16 67978935 67978935 C T SLC12A4 Intron 0.21 TCGA-ZF-A9RC-01 16 68012512 68012512 G A DPEP3 Silent p.V169V 0.07 TCGA-ZF-A9RC-01 16 69377369 69377369 A C TMED6 Missense_Mutation p.F222V 0.07 deleterious(0.05) possibly_damaging(0.863) TCGA-ZF-A9RC-01 16 70993710 70993710 C G HYDIN Missense_Mutation p.Q1994H 0.09 benign(0.028) TCGA-ZF-A9RC-01 16 74506261 74506261 G A GLG1 Nonsense_Mutation p.Q701* 0.08 TCGA-ZF-A9RC-01 16 84485627 84485627 G A ATP2C2 Silent p.Q587Q 0.08 TCGA-ZF-A9RC-01 16 87435864 87435864 G A MAP1LC3B Missense_Mutation p.M60I 0.17 deleterious(0.03) benign(0.386) TCGA-ZF-A9RC-01 16 87678051 87678051 C T JPH3 Silent p.A190A 0.17 TCGA-ZF-A9RC-01 16 89921019 89921019 A G SPIRE2 Missense_Mutation p.Q284R 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RC-01 17 10315693 10315693 G A MYH8 Silent p.I470I 0.15 TCGA-ZF-A9RC-01 17 16332186 16332186 G A TRPV2 Missense_Mutation p.E493K 0.11 tolerated(0.27) benign(0.26) TCGA-ZF-A9RC-01 17 17772754 17772754 G A TOM1L2 Missense_Mutation p.R271C 0.15 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 17 18965435 18965435 G C SNORD3B-1 RNA 0.15 TCGA-ZF-A9RC-01 17 19582095 19582095 C T SLC47A2 Silent p.V571V 0.10 TCGA-ZF-A9RC-01 17 25749260 25749260 C G TBC1D3P5 RNA 0.13 TCGA-ZF-A9RC-01 17 25976067 25976067 C T LGALS9 3'UTR 0.26 TCGA-ZF-A9RC-01 17 26906504 26906504 C G SPAG5 Splice_Site p.X962_splice 0.10 TCGA-ZF-A9RC-01 17 26940677 26940677 G A RP11-192H23.4 Silent p.A35A 0.11 TCGA-ZF-A9RC-01 17 28530352 28530352 G A SLC6A4 Silent p.I552I 0.07 TCGA-ZF-A9RC-01 17 28770959 28770959 G A CPD Missense_Mutation p.G838E 0.22 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RC-01 17 2909246 2909246 C T RAP1GAP2 Intron 0.13 TCGA-ZF-A9RC-01 17 29623198 29623198 G A OMG Missense_Mutation p.S51F 0.12 tolerated(0.69) possibly_damaging(0.478) TCGA-ZF-A9RC-01 17 34257132 34257132 C G RDM1 Missense_Mutation p.R75T 0.38 deleterious(0) possibly_damaging(0.904) TCGA-ZF-A9RC-01 17 35931957 35931957 C T SYNRG Missense_Mutation p.R344Q 0.21 deleterious(0.05) probably_damaging(0.988) TCGA-ZF-A9RC-01 17 3627231 3627231 T C GSG2 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-ZF-A9RC-01 17 37234283 37234283 C T PLXDC1 Missense_Mutation p.E357K 0.10 deleterious(0.04) benign(0.063) TCGA-ZF-A9RC-01 17 37864656 37864656 G A ERBB2 Missense_Mutation p.R103Q 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 17 38856528 38856528 G C KRT24 Nonsense_Mutation p.Y321* 0.05 TCGA-ZF-A9RC-01 17 39502449 39502449 G C KRT33A Missense_Mutation p.D379E 0.06 tolerated(0.94) benign(0.001) TCGA-ZF-A9RC-01 17 39521224 39521224 C T KRT33B Missense_Mutation p.E302K 0.21 deleterious(0) probably_damaging(0.98) TCGA-ZF-A9RC-01 17 39594407 39594407 C T KRT38 Silent p.V393V 0.22 TCGA-ZF-A9RC-01 17 39596998 39596998 G A KRT38 Missense_Mutation p.S59F 0.12 deleterious(0.03) benign(0.367) TCGA-ZF-A9RC-01 17 39681206 39681206 G A KRT19 Silent p.I183I 0.12 TCGA-ZF-A9RC-01 17 39766593 39766593 C T KRT16 Missense_Mutation p.E424K 0.10 deleterious(0.02) possibly_damaging(0.899) TCGA-ZF-A9RC-01 17 39780589 39780589 G C KRT17 Missense_Mutation p.S58C 0.15 tolerated(0.1) possibly_damaging(0.869) TCGA-ZF-A9RC-01 17 39884456 39884457 CC G HAP1 Frame_Shift_Del p.R399Pfs*45 0.21 TCGA-ZF-A9RC-01 17 40040509 40040509 G A ACLY Silent p.F697F 0.17 TCGA-ZF-A9RC-01 17 41622708 41622708 C T ETV4 Missense_Mutation p.E30K 0.36 tolerated(0.71) benign(0.179) TCGA-ZF-A9RC-01 17 42268209 42268209 G T TMUB2 Missense_Mutation p.V315L 0.11 deleterious(0.03) benign(0.098) TCGA-ZF-A9RC-01 17 42336598 42336598 C T SLC4A1 Missense_Mutation p.G270E 0.14 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RC-01 17 42477158 42477158 C G GPATCH8 Missense_Mutation p.E763Q 0.08 deleterious_low_confidence(0.04) probably_damaging(0.932) TCGA-ZF-A9RC-01 17 42478050 42478050 C T GPATCH8 Silent p.P465P 0.09 TCGA-ZF-A9RC-01 17 42932319 42932319 A G EFTUD2 Missense_Mutation p.I700T 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 17 43226444 43226444 G C HEXIM1 5'UTR 0.14 TCGA-ZF-A9RC-01 17 43333141 43333141 G A SPATA32 Silent p.F136F 0.18 TCGA-ZF-A9RC-01 17 43516842 43516842 C T PLEKHM1 Splice_Site p.X1020_splice 0.20 TCGA-ZF-A9RC-01 17 44590311 44590311 C T LRRC37A2 Missense_Mutation p.P78L 0.18 tolerated(0.47) benign(0.026) TCGA-ZF-A9RC-01 17 46675164 46675164 C T HOXB6 Missense_Mutation p.E117K 0.29 tolerated(0.33) benign(0.012) TCGA-ZF-A9RC-01 17 47394737 47394737 G A ZNF652 Silent p.I117I 0.15 TCGA-ZF-A9RC-01 17 48051341 48051341 C T DLX4 3'UTR 0.28 TCGA-ZF-A9RC-01 17 4805158 4805158 C T C17orf107 3'UTR 0.24 TCGA-ZF-A9RC-01 17 48072150 48072150 G C DLX3 Silent p.L71L 0.14 TCGA-ZF-A9RC-01 17 48166512 48166512 G T ITGA3 Missense_Mutation p.M1028I 0.11 deleterious(0.03) possibly_damaging(0.568) TCGA-ZF-A9RC-01 17 48917944 48917944 G A WFIKKN2 Missense_Mutation p.C432Y 0.09 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 17 57089751 57089751 T A TRIM37 Missense_Mutation p.N878I 0.06 deleterious_low_confidence(0.01) benign(0.177) TCGA-ZF-A9RC-01 17 57290598 57290598 G A SMG8 Missense_Mutation p.R805K 0.12 tolerated(0.11) benign(0.018) TCGA-ZF-A9RC-01 17 58603262 58603262 C T APPBP2 Missense_Mutation p.E11K 0.29 tolerated(0.57) benign(0.115) TCGA-ZF-A9RC-01 17 59989374 59989374 C T INTS2 Missense_Mutation p.R244K 0.25 tolerated(0.71) probably_damaging(0.99) TCGA-ZF-A9RC-01 17 60005344 60005344 G A INTS2 5'UTR 0.37 TCGA-ZF-A9RC-01 17 60689850 60689850 C T TLK2 Missense_Mutation p.S726L 0.21 deleterious(0.05) benign(0.063) TCGA-ZF-A9RC-01 17 61987969 61987969 C G CSHL1 Intron 0.11 TCGA-ZF-A9RC-01 17 61988591 61988591 G A CSHL1 5'Flank 0.23 TCGA-ZF-A9RC-01 17 62499668 62499668 G A DDX5 Missense_Mutation p.R177W 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 17 63553946 63553946 C T AXIN2 Missense_Mutation p.E265K 0.22 deleterious(0.04) possibly_damaging(0.46) TCGA-ZF-A9RC-01 17 67129924 67129924 G A ABCA6 Missense_Mutation p.L217F 0.09 tolerated(0.69) benign(0.008) TCGA-ZF-A9RC-01 17 71193179 71193179 G C COG1 Missense_Mutation p.R234T 0.11 deleterious(0) probably_damaging(0.979) TCGA-ZF-A9RC-01 17 7165288 7165288 G A CLDN7 Silent p.T25T 0.30 TCGA-ZF-A9RC-01 17 72350363 72350363 C T KIF19 Missense_Mutation p.R791W 0.14 deleterious(0.02) possibly_damaging(0.762) TCGA-ZF-A9RC-01 17 72769080 72769080 C T NAT9 Missense_Mutation p.D97N 0.37 tolerated(0.18) benign(0.047) TCGA-ZF-A9RC-01 17 73266270 73266270 C A MIF4GD Nonsense_Mutation p.E3* 0.17 TCGA-ZF-A9RC-01 17 7348645 7348645 G C CHRNB1 Missense_Mutation p.D39H 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-ZF-A9RC-01 17 73564621 73564621 G C LLGL2 Missense_Mutation p.Q367H 0.19 deleterious(0.02) benign(0.012) TCGA-ZF-A9RC-01 17 74533528 74533528 G A CYGB Missense_Mutation p.R33W 0.24 deleterious(0) possibly_damaging(0.832) TCGA-ZF-A9RC-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.24 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RC-01 17 7592162 7592162 G A WRAP53 Missense_Mutation p.E66K 0.05 deleterious_low_confidence(0.01) benign(0.219) TCGA-ZF-A9RC-01 17 7636551 7636551 G A DNAH2 Silent p.Q182Q 0.15 TCGA-ZF-A9RC-01 17 76495137 76495137 C T DNAH17 Missense_Mutation p.E1886K 0.29 probably_damaging(0.999) TCGA-ZF-A9RC-01 17 76501372 76501372 C T DNAH17 Intron 0.17 TCGA-ZF-A9RC-01 17 7662380 7662380 C A DNAH2 Missense_Mutation p.H796N 0.36 possibly_damaging(0.529) TCGA-ZF-A9RC-01 17 78272236 78272236 G A RNF213 Missense_Mutation p.D710N 0.11 benign(0.026) TCGA-ZF-A9RC-01 17 7918289 7918289 G A GUCY2D Missense_Mutation p.E897K 0.09 deleterious(0) probably_damaging(0.978) TCGA-ZF-A9RC-01 17 79477801 79477801 G A ACTG1 Missense_Mutation p.S348L 0.19 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-ZF-A9RC-01 17 79536043 79536043 T C NPLOC4 Missense_Mutation p.Q483R 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 17 79817265 79817265 T A P4HB Splice_Site p.X49_splice 0.15 TCGA-ZF-A9RC-01 17 8077630 8077630 T A TMEM107 Intron 0.12 TCGA-ZF-A9RC-01 17 80788041 80788041 G A ZNF750 Nonsense_Mutation p.R717* 0.08 TCGA-ZF-A9RC-01 17 8404245 8404245 C T MYH10 Missense_Mutation p.E1215K 0.22 benign(0.423) TCGA-ZF-A9RC-01 18 12308769 12308769 C T TUBB6 Silent p.I47I 0.10 TCGA-ZF-A9RC-01 18 14533148 14533148 G A POTEC Missense_Mutation p.L323F 0.09 tolerated(0.08) probably_damaging(0.992) TCGA-ZF-A9RC-01 18 18690843 18690843 C T ROCK1 Missense_Mutation p.R10Q 0.06 deleterious(0.03) possibly_damaging(0.559) TCGA-ZF-A9RC-01 18 21181263 21181263 A C ANKRD29 Missense_Mutation p.L278R 0.11 deleterious(0.04) possibly_damaging(0.467) TCGA-ZF-A9RC-01 18 22806823 22806823 G A ZNF521 Silent p.S353S 0.21 TCGA-ZF-A9RC-01 18 28647973 28647973 G C DSC2 3'UTR 0.13 TCGA-ZF-A9RC-01 18 29111072 29111072 G A DSG2 Silent p.V379V 0.27 TCGA-ZF-A9RC-01 18 32706935 32706935 G C MAPRE2 Missense_Mutation p.A212P 0.29 tolerated(0.22) benign(0.034) TCGA-ZF-A9RC-01 18 346398 346398 C G COLEC12 Silent p.S408S 0.12 TCGA-ZF-A9RC-01 18 3879168 3879168 G A DLGAP1 Nonsense_Mutation p.Q301* 0.12 TCGA-ZF-A9RC-01 18 40857281 40857281 G A SYT4 5'UTR 0.10 TCGA-ZF-A9RC-01 18 6046754 6046754 C T L3MBTL4 Splice_Site p.X482_splice 0.11 TCGA-ZF-A9RC-01 18 8784836 8784854 TTGCAGGTAAGGGGGCTCG - SOGA2 Splice_Site p.X576_splice 0.19 TCGA-ZF-A9RC-01 18 9547888 9547888 G A PPP4R1 Nonsense_Mutation p.Q918* 0.11 TCGA-ZF-A9RC-01 18 9588829 9588829 C T PPP4R1 Silent p.L106L 0.23 TCGA-ZF-A9RC-01 19 10444148 10444149 - G RAVER1 Frame_Shift_Ins p.L30Afs*4 0.10 TCGA-ZF-A9RC-01 19 10514180 10514180 C T CDC37 5'UTR 0.18 TCGA-ZF-A9RC-01 19 10692498 10692498 G C AP1M2 Silent p.V108V 0.15 TCGA-ZF-A9RC-01 19 10746998 10746998 G A SLC44A2 Splice_Site p.X412_splice 0.06 TCGA-ZF-A9RC-01 19 11486525 11486525 C T SWSAP1 Missense_Mutation p.P175S 0.32 tolerated(0.6) benign(0.025) TCGA-ZF-A9RC-01 19 11546923 11546923 C T PRKCSH 5'UTR 0.21 TCGA-ZF-A9RC-01 19 11836082 11836082 C T ZNF823 Missense_Mutation p.G22S 0.06 deleterious(0.01) benign(0.124) TCGA-ZF-A9RC-01 19 11977371 11977371 G C ZNF439 Missense_Mutation p.Q65H 0.10 tolerated(0.93) benign(0.005) TCGA-ZF-A9RC-01 19 1230915 1230915 C T C19orf26 Missense_Mutation p.G447R 0.18 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ZF-A9RC-01 19 12969354 12969354 C G MAST1 Nonsense_Mutation p.Y389* 0.12 TCGA-ZF-A9RC-01 19 14157414 14157414 C T IL27RA Silent p.L375L 0.31 TCGA-ZF-A9RC-01 19 15472544 15472544 G C AKAP8 Missense_Mutation p.F464L 0.09 tolerated(0.41) probably_damaging(0.999) TCGA-ZF-A9RC-01 19 15789068 15789068 C G CYP4F12 Intron 0.15 TCGA-ZF-A9RC-01 19 1615435 1615435 C T TCF3 Silent p.R557R 0.19 TCGA-ZF-A9RC-01 19 16980756 16980756 G A SIN3B Silent p.L796L 0.18 TCGA-ZF-A9RC-01 19 17886294 17886294 C T FCHO1 Silent p.F325F 0.26 TCGA-ZF-A9RC-01 19 18234037 18234037 C T MAST3 Missense_Mutation p.S108F 0.09 deleterious(0) probably_damaging(0.976) TCGA-ZF-A9RC-01 19 18234051 18234051 C T MAST3 Missense_Mutation p.L113F 0.10 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RC-01 19 19135978 19135978 C T SUGP2 Silent p.L393L 0.25 TCGA-ZF-A9RC-01 19 20150149 20150149 C G ZNF682 Intron 0.39 TCGA-ZF-A9RC-01 19 21239707 21239707 G A ZNF430 Missense_Mutation p.R198K 0.11 tolerated(0.12) benign(0.055) TCGA-ZF-A9RC-01 19 21688468 21688468 C T ZNF429 5'UTR 0.38 TCGA-ZF-A9RC-01 19 33666477 33666477 G A WDR88 Silent p.%3D 0.13 TCGA-ZF-A9RC-01 19 35175507 35175507 C G ZNF302 Missense_Mutation p.L189V 0.12 tolerated(0.07) benign(0.01) TCGA-ZF-A9RC-01 19 35823514 35823514 C T CD22 Silent p.Y33Y 0.15 TCGA-ZF-A9RC-01 19 36220957 36220957 C T KMT2B Silent p.A1669A 0.33 TCGA-ZF-A9RC-01 19 36271181 36271181 C T ARHGAP33 Silent p.A190A 0.20 TCGA-ZF-A9RC-01 19 36685968 36685968 C T ZNF565 Missense_Mutation p.V34M 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-A9RC-01 19 3746488 3746488 G A TJP3 Silent p.K681K 0.20 TCGA-ZF-A9RC-01 19 37619711 37619711 G C ZNF420 Missense_Mutation p.Q606H 0.29 tolerated(0.08) benign(0.219) TCGA-ZF-A9RC-01 19 38028268 38028268 C T ZNF793 Silent p.F236F 0.10 TCGA-ZF-A9RC-01 19 38160216 38160216 G A ZNF781 Silent p.F278F 0.24 TCGA-ZF-A9RC-01 19 39125632 39125632 G A EIF3K Splice_Site p.X167_splice 0.23 TCGA-ZF-A9RC-01 19 39876663 39876663 C T PAF1 Missense_Mutation p.D522N 0.15 tolerated_low_confidence(0.39) unknown(0) TCGA-ZF-A9RC-01 19 39898696 39898696 C T ZFP36 Missense_Mutation p.S119L 0.08 deleterious(0.02) possibly_damaging(0.708) TCGA-ZF-A9RC-01 19 39899359 39899359 G A ZFP36 3'UTR 0.08 TCGA-ZF-A9RC-01 19 41518644 41518644 C T CYP2B6 Silent p.D406D 0.28 TCGA-ZF-A9RC-01 19 42219615 42219615 A G CEACAM5 Silent p.R250R 0.25 TCGA-ZF-A9RC-01 19 42728598 42728598 A C ZNF526 Missense_Mutation p.M15L 0.16 deleterious_low_confidence(0.04) benign(0) TCGA-ZF-A9RC-01 19 44008075 44008075 C T PHLDB3 Missense_Mutation p.E66K 0.18 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RC-01 19 4523431 4523431 C T PLIN5 3'UTR 0.38 TCGA-ZF-A9RC-01 19 45477743 45477743 C T CLPTM1 Silent p.N119N 0.05 TCGA-ZF-A9RC-01 19 45873455 45873455 T C ERCC2 Missense_Mutation p.Y14C 0.12 deleterious(0) probably_damaging(0.977) TCGA-ZF-A9RC-01 19 46282709 46282709 C T DMPK Silent p.L118L 0.26 TCGA-ZF-A9RC-01 19 46733721 46733721 G A IGFL1 Silent p.L90L 0.10 TCGA-ZF-A9RC-01 19 47761594 47761594 C T CCDC9 5'UTR 0.21 TCGA-ZF-A9RC-01 19 50519312 50519312 G T VRK3 Silent p.T36T 0.12 TCGA-ZF-A9RC-01 19 50792752 50792752 A G MYH14 Silent p.A1604A 0.17 TCGA-ZF-A9RC-01 19 51581171 51581171 G A KLK14 3'UTR 0.25 TCGA-ZF-A9RC-01 19 52400201 52400201 C G ZNF649 Missense_Mutation p.D16H 0.16 deleterious(0.02) probably_damaging(0.909) TCGA-ZF-A9RC-01 19 52519935 52519935 G A ZNF614 Nonsense_Mutation p.Q306* 0.16 TCGA-ZF-A9RC-01 19 52619263 52619263 T C ZNF616 Missense_Mutation p.E385G 0.05 deleterious(0.02) probably_damaging(0.948) TCGA-ZF-A9RC-01 19 54215605 54215605 G C MIR517A RNA 0.06 TCGA-ZF-A9RC-01 19 54782181 54782181 G A LILRB2 Silent p.Y397Y 0.20 TCGA-ZF-A9RC-01 19 55607232 55607232 C T PPP1R12C Intron 0.13 TCGA-ZF-A9RC-01 19 55713439 55713439 G A PTPRH Nonsense_Mutation p.R380* 0.14 TCGA-ZF-A9RC-01 19 58101627 58101627 G A ZIK1 Missense_Mutation p.D150N 0.11 tolerated(0.12) benign(0.081) TCGA-ZF-A9RC-01 19 58101897 58101897 G A ZIK1 Missense_Mutation p.E240K 0.12 tolerated(0.08) probably_damaging(0.978) TCGA-ZF-A9RC-01 19 58102093 58102093 G A ZIK1 Missense_Mutation p.R305K 0.15 tolerated(0.1) benign(0.213) TCGA-ZF-A9RC-01 19 58102135 58102135 G A ZIK1 Missense_Mutation p.G319E 0.16 deleterious(0.03) possibly_damaging(0.873) TCGA-ZF-A9RC-01 19 58102555 58102555 G C ZIK1 Missense_Mutation p.G459A 0.12 tolerated(0.05) probably_damaging(0.998) TCGA-ZF-A9RC-01 19 58102569 58102569 G C ZIK1 Missense_Mutation p.E464Q 0.12 deleterious(0.01) possibly_damaging(0.598) TCGA-ZF-A9RC-01 19 58453797 58453797 A C ZNF256 Missense_Mutation p.L127V 0.15 deleterious(0.01) benign(0.008) TCGA-ZF-A9RC-01 19 58453833 58453833 G C ZNF256 Missense_Mutation p.Q115E 0.15 deleterious(0.01) benign(0.047) TCGA-ZF-A9RC-01 19 58453882 58453882 G C ZNF256 Silent p.V98V 0.15 TCGA-ZF-A9RC-01 19 58453920 58453920 G C ZNF256 Missense_Mutation p.P86A 0.15 tolerated(0.21) benign(0.164) TCGA-ZF-A9RC-01 19 58549327 58549327 C T ZSCAN1 Silent p.F41F 0.17 TCGA-ZF-A9RC-01 19 5866713 5866713 G A FUT5 Missense_Mutation p.R342C 0.13 tolerated(0.08) benign(0.03) TCGA-ZF-A9RC-01 19 6852987 6852987 G T VAV1 Missense_Mutation p.E743D 0.09 deleterious(0.03) benign(0.159) TCGA-ZF-A9RC-01 19 8028433 8028433 C T ELAVL1 Silent p.L305L 0.12 TCGA-ZF-A9RC-01 19 9063771 9063771 G A MUC16 Missense_Mutation p.S7892F 0.13 unknown(0) TCGA-ZF-A9RC-01 19 9077432 9077432 C G MUC16 Missense_Mutation p.K3338N 0.10 unknown(0) TCGA-ZF-A9RC-01 19 9090778 9090778 G A MUC16 Missense_Mutation p.T346I 0.24 unknown(0) TCGA-ZF-A9RC-01 1 101194769 101194769 C T VCAM1 Silent p.F345F 0.09 TCGA-ZF-A9RC-01 1 101339878 101339878 C G EXTL2 Missense_Mutation p.G205R 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RC-01 1 10355214 10355214 G A KIF1B Missense_Mutation p.G508E 0.13 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 1 107600312 107600312 G A PRMT6 Silent p.L325L 0.16 TCGA-ZF-A9RC-01 1 109740694 109740694 A G KIAA1324 Missense_Mutation p.Y799C 0.26 deleterious(0) probably_damaging(0.914) TCGA-ZF-A9RC-01 1 109968992 109968992 G A PSMA5 5'Flank 0.09 TCGA-ZF-A9RC-01 1 110210668 110210668 C T GSTM2 5'Flank 0.11 TCGA-ZF-A9RC-01 1 110214111 110214117 TCATCGC - GSTM2 Frame_Shift_Del p.I159Mfs*21 0.09 TCGA-ZF-A9RC-01 1 110255871 110255871 C T GSTM5 Intron 0.10 TCGA-ZF-A9RC-01 1 110282867 110282867 G A GSTM3 Missense_Mutation p.R15C 0.16 deleterious(0.03) probably_damaging(0.977) TCGA-ZF-A9RC-01 1 113201662 113201662 G A CAPZA1 Missense_Mutation p.D149N 0.10 tolerated(0.36) benign(0.042) TCGA-ZF-A9RC-01 1 114447399 114447399 C T AP4B1 5'UTR 0.30 TCGA-ZF-A9RC-01 1 115006170 115006170 A C TRIM33 Silent p.T218T 0.05 TCGA-ZF-A9RC-01 1 118623924 118623924 C T SPAG17 Missense_Mutation p.R670K 0.30 tolerated(0.49) benign(0.019) TCGA-ZF-A9RC-01 1 118624072 118624072 C T SPAG17 Missense_Mutation p.M652I 0.07 tolerated(0.16) benign(0.029) TCGA-ZF-A9RC-01 1 120307011 120307011 C T HMGCS2 Missense_Mutation p.E115K 0.11 tolerated(0.32) probably_damaging(0.998) TCGA-ZF-A9RC-01 1 120462993 120462993 C T NOTCH2 Missense_Mutation p.E1780K 0.19 tolerated(0.91) benign(0.034) TCGA-ZF-A9RC-01 1 120548019 120548019 C T NOTCH2 Silent p.L116L 0.12 TCGA-ZF-A9RC-01 1 12251106 12251106 C T TNFRSF1B Missense_Mutation p.P91S 0.25 tolerated(0.57) benign(0.014) TCGA-ZF-A9RC-01 1 12320823 12320823 G A VPS13D Missense_Mutation p.R395Q 0.11 probably_damaging(0.928) TCGA-ZF-A9RC-01 1 12320849 12320849 G C VPS13D Missense_Mutation p.E404Q 0.12 probably_damaging(0.943) TCGA-ZF-A9RC-01 1 12336612 12336612 G A VPS13D Silent p.K989K 0.07 TCGA-ZF-A9RC-01 1 12336805 12336805 G A VPS13D Missense_Mutation p.D1054N 0.11 possibly_damaging(0.905) TCGA-ZF-A9RC-01 1 1246026 1246026 C T PUSL1 Silent p.F219F 0.08 TCGA-ZF-A9RC-01 1 13036262 13036262 G A PRAMEF22 Missense_Mutation p.E112K 0.13 deleterious(0.02) possibly_damaging(0.624) TCGA-ZF-A9RC-01 1 144882665 144882665 G A PDE4DIP Silent p.L1118L 0.09 TCGA-ZF-A9RC-01 1 145293183 145293183 C T NBPF10 5'Flank 0.16 TCGA-ZF-A9RC-01 1 146763168 146763168 G A CHD1L Silent p.L775L 0.13 TCGA-ZF-A9RC-01 1 148741688 148741688 A G NBPF16 Splice_Site p.X59_splice 0.23 TCGA-ZF-A9RC-01 1 149859299 149859299 G C HIST2H2AB Silent p.L56L 0.42 TCGA-ZF-A9RC-01 1 150941570 150941570 G C CERS2 5'UTR 0.16 TCGA-ZF-A9RC-01 1 151638466 151638466 G A SNX27 Missense_Mutation p.E322K 0.26 deleterious(0.01) possibly_damaging(0.475) TCGA-ZF-A9RC-01 1 151993799 151993799 C G NBPF18P RNA 0.09 TCGA-ZF-A9RC-01 1 152276585 152276585 C T FLG Missense_Mutation p.E3593K 0.20 unknown(0) TCGA-ZF-A9RC-01 1 153964055 153964055 C T RPS27 Silent p.I43I 0.16 TCGA-ZF-A9RC-01 1 155184431 155184431 C T MTX1 3'Flank 0.12 TCGA-ZF-A9RC-01 1 155235656 155235656 C T CLK2 Missense_Mutation p.E309K 0.06 tolerated(1) benign(0.195) TCGA-ZF-A9RC-01 1 155288460 155288460 C T FDPS Missense_Mutation p.S230F 0.12 deleterious(0.01) possibly_damaging(0.754) TCGA-ZF-A9RC-01 1 155294195 155294195 C G RUSC1 Intron 0.09 TCGA-ZF-A9RC-01 1 155699109 155699109 C T DAP3 Silent p.I265I 0.08 TCGA-ZF-A9RC-01 1 156025192 156025192 C G LAMTOR2 Silent p.L69L 0.14 TCGA-ZF-A9RC-01 1 156106009 156106009 C T LMNA Missense_Mutation p.R388C 0.13 deleterious(0.01) possibly_damaging(0.786) TCGA-ZF-A9RC-01 1 156255160 156255160 G A TMEM79 Missense_Mutation p.R48K 0.11 tolerated_low_confidence(0.57) benign(0.002) TCGA-ZF-A9RC-01 1 1562790 1562790 G A MIB2 Missense_Mutation p.E612K 0.10 deleterious(0.02) possibly_damaging(0.771) TCGA-ZF-A9RC-01 1 156786476 156786476 A G SH2D2A Missense_Mutation p.C9R 0.22 tolerated(0.07) possibly_damaging(0.894) TCGA-ZF-A9RC-01 1 158224897 158224897 C T CD1A Missense_Mutation p.H28Y 0.12 tolerated(0.32) benign(0.029) TCGA-ZF-A9RC-01 1 158368903 158368903 C T OR10T2 Silent p.V118V 0.21 TCGA-ZF-A9RC-01 1 158746965 158746965 A G OR6N2 Missense_Mutation p.L154P 0.07 deleterious(0) probably_damaging(0.953) TCGA-ZF-A9RC-01 1 158912102 158912102 C T PYHIN1 Silent p.I305I 0.42 TCGA-ZF-A9RC-01 1 159505031 159505031 A G OR10J5 Missense_Mutation p.I256T 0.36 deleterious(0.04) benign(0.26) TCGA-ZF-A9RC-01 1 159907540 159907540 G A IGSF9 Silent p.F112F 0.11 TCGA-ZF-A9RC-01 1 160268936 160268936 C A COPA Nonsense_Mutation p.E605* 0.34 TCGA-ZF-A9RC-01 1 160275264 160275264 G A COPA Silent p.I551I 0.16 TCGA-ZF-A9RC-01 1 160282926 160282926 C A COPA Missense_Mutation p.D292Y 0.10 deleterious(0) probably_damaging(0.972) TCGA-ZF-A9RC-01 1 160388872 160388872 C T VANGL2 Silent p.I91I 0.25 TCGA-ZF-A9RC-01 1 161092094 161092094 G A DEDD Missense_Mutation p.S267F 0.27 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 1 161092820 161092820 C T DEDD Intron 0.22 TCGA-ZF-A9RC-01 1 161138868 161138868 G A PPOX Silent p.E234E 0.25 TCGA-ZF-A9RC-01 1 16202986 16202986 A C SPEN Silent p.R232R 0.20 TCGA-ZF-A9RC-01 1 163315524 163315524 A T NUF2 Silent p.S288S 0.27 TCGA-ZF-A9RC-01 1 1635007 1635007 G C CDK11A Silent p.V656V 0.27 TCGA-ZF-A9RC-01 1 167849836 167849836 G A ADCY10 Silent p.F344F 0.19 TCGA-ZF-A9RC-01 1 169699605 169699605 C T SELE Missense_Mutation p.G228E 0.23 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9RC-01 1 169761939 169761939 C T METTL18 Missense_Mutation p.D300N 0.20 tolerated(0.1) benign(0.238) TCGA-ZF-A9RC-01 1 169952504 169952504 G A KIFAP3 Silent p.L471L 0.31 TCGA-ZF-A9RC-01 1 170633534 170633534 G A PRRX1 Missense_Mutation p.E59K 0.26 tolerated(0.1) benign(0.3) TCGA-ZF-A9RC-01 1 171077357 171077357 G C FMO3 Missense_Mutation p.E208Q 0.15 tolerated(0.22) benign(0.009) TCGA-ZF-A9RC-01 1 171535888 171535888 T C PRRC2C Missense_Mutation p.V2153A 0.41 benign(0.067) TCGA-ZF-A9RC-01 1 174188322 174188322 G A RABGAP1L Silent p.K9K 0.15 TCGA-ZF-A9RC-01 1 175096133 175096133 A C TNN Missense_Mutation p.Q986P 0.19 tolerated(0.17) benign(0.008) TCGA-ZF-A9RC-01 1 17555203 17555203 G A PADI1 Missense_Mutation p.E246K 0.39 tolerated(0.33) benign(0.005) TCGA-ZF-A9RC-01 1 17596867 17596867 C A PADI3 Silent p.L264L 0.42 TCGA-ZF-A9RC-01 1 176085807 176085807 C T RFWD2 Missense_Mutation p.D327N 0.24 tolerated(0.33) benign(0.005) TCGA-ZF-A9RC-01 1 177250320 177250320 G A BRINP2 Missense_Mutation p.D670N 0.28 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RC-01 1 177906631 177906631 C T SEC16B Missense_Mutation p.D741N 0.45 tolerated(0.07) benign(0.214) TCGA-ZF-A9RC-01 1 178427408 178427408 G C RASAL2 Missense_Mutation p.R994T 0.07 tolerated(0.4) benign(0.006) TCGA-ZF-A9RC-01 1 178491476 178491476 G A TEX35 Silent p.E201E 0.56 TCGA-ZF-A9RC-01 1 180366740 180366740 C T ACBD6 Missense_Mutation p.G192S 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 1 182354934 182354934 G A GLUL Silent p.V188V 0.39 TCGA-ZF-A9RC-01 1 182853889 182853889 G A DHX9 Missense_Mutation p.M1134I 0.44 tolerated(0.42) benign(0.001) TCGA-ZF-A9RC-01 1 182869338 182869338 T C SHCBP1L Missense_Mutation p.N581S 0.42 deleterious(0.03) benign(0.06) TCGA-ZF-A9RC-01 1 182908473 182908473 T G SHCBP1L Missense_Mutation p.K305T 0.13 deleterious(0.03) possibly_damaging(0.842) TCGA-ZF-A9RC-01 1 183095341 183095341 A T LAMC1 Missense_Mutation p.Q963L 0.16 tolerated(0.4) benign(0.029) TCGA-ZF-A9RC-01 1 186056647 186056647 C T HMCN1 Missense_Mutation p.S3078F 0.08 probably_damaging(0.998) TCGA-ZF-A9RC-01 1 186158848 186158848 G C HMCN1 Missense_Mutation p.L5582F 0.43 probably_damaging(0.979) TCGA-ZF-A9RC-01 1 186308831 186308831 G A TPR Missense_Mutation p.T1365I 0.07 benign(0.015) TCGA-ZF-A9RC-01 1 18807469 18807469 G A KLHDC7A 5'UTR 0.24 TCGA-ZF-A9RC-01 1 18960999 18960999 C T PAX7 Silent p.I96I 0.08 TCGA-ZF-A9RC-01 1 190067825 190067825 A G BRINP3 Missense_Mutation p.Y542H 0.08 tolerated(0.36) possibly_damaging(0.543) TCGA-ZF-A9RC-01 1 19511656 19511656 G A UBR4 Silent p.S625S 0.16 TCGA-ZF-A9RC-01 1 196715047 196715047 A G CFH Silent p.Q1137Q 0.06 TCGA-ZF-A9RC-01 1 196871591 196871591 A G CFHR4 Silent p.L33L 0.17 TCGA-ZF-A9RC-01 1 197404441 197404441 C A CRB1 Missense_Mutation p.H1150N 0.45 tolerated(0.43) benign(0.212) TCGA-ZF-A9RC-01 1 200549457 200549457 C T KIF14 Silent p.L1130L 0.31 TCGA-ZF-A9RC-01 1 200817712 200817712 T C CAMSAP2 Silent p.N605N 0.33 TCGA-ZF-A9RC-01 1 202934595 202934595 C G CYB5R1 Missense_Mutation p.E127Q 0.15 tolerated(0.06) possibly_damaging(0.521) TCGA-ZF-A9RC-01 1 204412719 204412719 C T PIK3C2B Silent p.L958L 0.07 TCGA-ZF-A9RC-01 1 204413499 204413499 G A PIK3C2B Missense_Mutation p.S911L 0.17 deleterious(0.03) possibly_damaging(0.639) TCGA-ZF-A9RC-01 1 205273395 205273395 T C NUAK2 Missense_Mutation p.H357R 0.10 deleterious(0.04) benign(0.393) TCGA-ZF-A9RC-01 1 207195419 207195432 GTCCTTGGTAGGAC - C1orf116 Frame_Shift_Del p.S560Efs*3 0.19 TCGA-ZF-A9RC-01 1 207940415 207940415 A C CD46 Missense_Mutation p.K244T 0.14 tolerated(0.1) benign(0.065) TCGA-ZF-A9RC-01 1 21014084 21014084 C T KIF17 Missense_Mutation p.E579K 0.25 tolerated_low_confidence(0.13) benign(0.003) TCGA-ZF-A9RC-01 1 21137340 21137340 G A EIF4G3 Silent p.I1495I 0.20 TCGA-ZF-A9RC-01 1 213290731 213290731 T A RPS6KC1 Missense_Mutation p.F151I 0.09 tolerated(0.27) benign(0.003) TCGA-ZF-A9RC-01 1 214819982 214819982 C G CENPF Missense_Mutation p.L2357V 0.35 probably_damaging(0.996) TCGA-ZF-A9RC-01 1 216017648 216017648 G A USH2A Silent p.I3082I 0.36 TCGA-ZF-A9RC-01 1 2160480 2160480 T A SKI Missense_Mutation p.M92K 0.23 deleterious(0) benign(0.189) TCGA-ZF-A9RC-01 1 216496877 216496877 C T USH2A Missense_Mutation p.E497K 0.15 benign(0.309) TCGA-ZF-A9RC-01 1 217793681 217793681 G A GPATCH2 Missense_Mutation p.R73W 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 1 21903941 21903941 G T ALPL Missense_Mutation p.V459L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9RC-01 1 22079540 22079540 T A USP48 Missense_Mutation p.Y162F 0.13 tolerated(0.18) benign(0.019) TCGA-ZF-A9RC-01 1 22211109 22211109 G A HSPG2 Silent p.F522F 0.17 TCGA-ZF-A9RC-01 1 22211893 22211893 G C HSPG2 Missense_Mutation p.S377C 0.12 probably_damaging(0.992) TCGA-ZF-A9RC-01 1 22216509 22216509 G A HSPG2 Missense_Mutation p.S180F 0.13 probably_damaging(0.998) TCGA-ZF-A9RC-01 1 22216514 22216514 G A HSPG2 Silent p.V178V 0.12 TCGA-ZF-A9RC-01 1 225686080 225686080 T G ENAH Missense_Mutation p.E569D 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 1 226413261 226413261 C G MIXL1 Missense_Mutation p.F149L 0.12 tolerated(0.34) benign(0.001) TCGA-ZF-A9RC-01 1 226413461 226413461 C G MIXL1 Nonsense_Mutation p.S216* 0.12 TCGA-ZF-A9RC-01 1 231344829 231344830 - T TRIM67 Frame_Shift_Ins p.W653Lfs*33 0.10 TCGA-ZF-A9RC-01 1 231954112 231954112 G T DISC1 Missense_Mutation p.E610D 0.08 deleterious(0.02) possibly_damaging(0.727) TCGA-ZF-A9RC-01 1 23376915 23376915 C T KDM1A Missense_Mutation p.H205Y 0.17 tolerated(1) benign(0.008) TCGA-ZF-A9RC-01 1 23397805 23397805 G A KDM1A Missense_Mutation p.E501K 0.15 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 1 236187393 236187393 C G NID1 Missense_Mutation p.R702P 0.11 deleterious(0.03) possibly_damaging(0.749) TCGA-ZF-A9RC-01 1 24194664 24194664 G A FUCA1 Missense_Mutation p.T38I 0.27 tolerated(0.1) probably_damaging(0.934) TCGA-ZF-A9RC-01 1 245775271 245775271 A C KIF26B Missense_Mutation p.K697N 0.11 deleterious(0) unknown(0) TCGA-ZF-A9RC-01 1 248685273 248685273 C G OR2G6 Missense_Mutation p.S109W 0.25 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 1 248685289 248685289 C T OR2G6 Silent p.L114L 0.19 TCGA-ZF-A9RC-01 1 26515797 26515797 G A CNKSR1 Missense_Mutation p.E634K 0.15 deleterious(0.03) possibly_damaging(0.713) TCGA-ZF-A9RC-01 1 26612463 26612463 C T UBXN11 Missense_Mutation p.E209K 0.23 tolerated(0.06) probably_damaging(0.949) TCGA-ZF-A9RC-01 1 27101531 27101531 C T ARID1A Missense_Mutation p.P1605S 0.15 unknown(0) TCGA-ZF-A9RC-01 1 27276529 27276529 G A C1orf172 3'UTR 0.07 TCGA-ZF-A9RC-01 1 27680316 27680316 C G SYTL1 Silent p.L554L 0.41 TCGA-ZF-A9RC-01 1 27680363 27680363 C G SYTL1 3'UTR 0.32 TCGA-ZF-A9RC-01 1 27736447 27736447 C T WASF2 Missense_Mutation p.D360N 0.10 tolerated(0.49) unknown(0) TCGA-ZF-A9RC-01 1 28271869 28271869 T C SMPDL3B Missense_Mutation p.L63P 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-ZF-A9RC-01 1 28282294 28282294 C T SMPDL3B Missense_Mutation p.R264W 0.09 deleterious(0) probably_damaging(0.932) TCGA-ZF-A9RC-01 1 28354418 28354418 C T EYA3 Missense_Mutation p.M127I 0.21 tolerated(1) benign(0.001) TCGA-ZF-A9RC-01 1 29475156 29475156 A G SRSF4 Silent p.H417H 0.27 TCGA-ZF-A9RC-01 1 32498792 32498792 G A KHDRBS1 Missense_Mutation p.E210K 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-ZF-A9RC-01 1 32800504 32800504 G A MARCKSL1 Silent p.F94F 0.14 TCGA-ZF-A9RC-01 1 33360316 33360316 C T TMEM54 3'UTR 0.21 TCGA-ZF-A9RC-01 1 33772966 33772966 C T A3GALT2 Missense_Mutation p.E142K 0.10 deleterious(0) benign(0.324) TCGA-ZF-A9RC-01 1 34554684 34554684 C T CSMD2 Missense_Mutation p.E60K 0.31 tolerated(0.42) benign(0.044) TCGA-ZF-A9RC-01 1 35944711 35944711 C T KIAA0319L Missense_Mutation p.G257S 0.11 tolerated(0.74) benign(0.001) TCGA-ZF-A9RC-01 1 36915856 36915856 C T OSCP1 Intron 0.30 TCGA-ZF-A9RC-01 1 3753101 3753101 C G CEP104 Missense_Mutation p.L425F 0.08 deleterious(0.03) possibly_damaging(0.747) TCGA-ZF-A9RC-01 1 37941262 37941262 C T ZC3H12A Silent p.F55F 0.09 TCGA-ZF-A9RC-01 1 39823288 39823288 T G MACF1 Missense_Mutation p.F1827C 0.05 probably_damaging(0.99) TCGA-ZF-A9RC-01 1 39876954 39876954 G C KIAA0754 Missense_Mutation p.E203D 0.66 benign(0.388) TCGA-ZF-A9RC-01 1 39957912 39957912 C G BMP8A Silent p.A83A 0.71 TCGA-ZF-A9RC-01 1 40929203 40929203 C T ZFP69B Missense_Mutation p.S516L 0.61 deleterious(0) probably_damaging(0.966) TCGA-ZF-A9RC-01 1 40960597 40960597 G A ZFP69 Silent p.L149L 0.69 TCGA-ZF-A9RC-01 1 42898913 42898913 C A ZMYND12 Missense_Mutation p.L292F 0.03 deleterious(0.04) possibly_damaging(0.642) TCGA-ZF-A9RC-01 1 43223591 43223591 C G LEPRE1 Missense_Mutation p.G315R 0.70 deleterious(0) possibly_damaging(0.511) TCGA-ZF-A9RC-01 1 44437320 44437320 C T DPH2 Missense_Mutation p.S249F 0.21 deleterious(0) possibly_damaging(0.814) TCGA-ZF-A9RC-01 1 45476220 45476220 G A HECTD3 Silent p.L176L 0.21 TCGA-ZF-A9RC-01 1 45809091 45809091 G C TOE1 Missense_Mutation p.R417T 0.09 tolerated(0.57) benign(0.002) TCGA-ZF-A9RC-01 1 46532610 46532610 C A PIK3R3 Silent p.L156L 0.24 TCGA-ZF-A9RC-01 1 47183663 47183663 G A EFCAB14 Missense_Mutation p.R33C 0.09 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RC-01 1 47755190 47755190 A G STIL Missense_Mutation p.Y314H 0.16 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 1 51436033 51436033 C G CDKN2C 5'UTR 0.36 TCGA-ZF-A9RC-01 1 52759296 52759296 G C ZFYVE9 Missense_Mutation p.W1066S 0.20 deleterious(0) probably_damaging(0.962) TCGA-ZF-A9RC-01 1 53237265 53237265 G C ZYG11B Missense_Mutation p.R257P 0.09 deleterious(0.04) possibly_damaging(0.619) TCGA-ZF-A9RC-01 1 53724059 53724059 G A LRP8 Missense_Mutation p.S714F 0.18 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 1 57395167 57395167 C T C8B Silent p.K562K 0.11 TCGA-ZF-A9RC-01 1 60381640 60381640 G C CYP2J2 Missense_Mutation p.P115A 0.10 tolerated(0.1) possibly_damaging(0.58) TCGA-ZF-A9RC-01 1 65849994 65849994 C A DNAJC6 Nonsense_Mutation p.S262* 0.21 TCGA-ZF-A9RC-01 1 6640717 6640717 C T ZBTB48 Silent p.L16L 0.38 TCGA-ZF-A9RC-01 1 6642229 6642229 G A ZBTB48 Missense_Mutation p.E268K 0.31 tolerated(0.29) benign(0.003) TCGA-ZF-A9RC-01 1 66798111 66798111 C T PDE4B Intron 0.11 TCGA-ZF-A9RC-01 1 68624818 68624818 G A WLS Silent p.F162F 0.10 TCGA-ZF-A9RC-01 1 68624830 68624830 G A WLS Silent p.L158L 0.16 TCGA-ZF-A9RC-01 1 84383298 84383298 G C TTLL7 Missense_Mutation p.R526G 0.10 deleterious(0) probably_damaging(0.932) TCGA-ZF-A9RC-01 1 84610010 84610011 - GCAGC PRKACB 5'UTR 0.09 TCGA-ZF-A9RC-01 1 86048174 86048174 C T CYR61 Missense_Mutation p.S237F 0.05 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 1 86048266 86048266 G A CYR61 Missense_Mutation p.E268K 0.13 tolerated(0.11) possibly_damaging(0.513) TCGA-ZF-A9RC-01 1 86210372 86210372 T G COL24A1 Missense_Mutation p.N1550T 0.14 deleterious(0) possibly_damaging(0.622) TCGA-ZF-A9RC-01 1 86591013 86591013 C T COL24A1 Missense_Mutation p.E336K 0.10 tolerated(0.42) benign(0.003) TCGA-ZF-A9RC-01 1 87033134 87033134 C G CLCA4 Missense_Mutation p.Q328E 0.27 deleterious(0.02) possibly_damaging(0.838) TCGA-ZF-A9RC-01 1 87380809 87380809 G A HS2ST1 Silent p.Q30Q 0.19 TCGA-ZF-A9RC-01 1 8932038 8932038 G A ENO1 Silent p.F31F 0.15 TCGA-ZF-A9RC-01 1 9011493 9011493 G A CA6 Intron 0.19 TCGA-ZF-A9RC-01 1 9063427 9063427 C T SLC2A7 Missense_Mutation p.E491K 0.12 tolerated(0.07) benign(0.037) TCGA-ZF-A9RC-01 1 91405617 91405617 G A ZNF644 Missense_Mutation p.H432Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 1 91406796 91406796 T C ZNF644 Missense_Mutation p.K39E 0.19 deleterious_low_confidence(0.01) benign(0.271) TCGA-ZF-A9RC-01 1 91788748 91788748 C T HFM1 Silent p.L812L 0.09 TCGA-ZF-A9RC-01 1 91978756 91978756 G A CDC7 Silent p.L238L 0.13 TCGA-ZF-A9RC-01 1 92174284 92174284 C T TGFBR3 Missense_Mutation p.M741I 0.09 deleterious(0.04) benign(0.058) TCGA-ZF-A9RC-01 1 94057961 94057961 G A BCAR3 Intron 0.23 TCGA-ZF-A9RC-01 1 94568618 94568618 C T ABCA4 Missense_Mutation p.D175N 0.10 tolerated(0.21) benign(0.016) TCGA-ZF-A9RC-01 1 9613837 9613837 G A SLC25A33 Silent p.V70V 0.11 TCGA-ZF-A9RC-01 1 9804541 9804541 G C CLSTN1 Silent p.P382P 0.09 TCGA-ZF-A9RC-01 1 99225664 99225664 G A SNX7 Missense_Mutation p.E445K 0.06 tolerated_low_confidence(0.13) benign(0.031) TCGA-ZF-A9RC-01 1 99470138 99470138 G A LPPR5 Silent p.F30F 0.22 TCGA-ZF-A9RC-01 20 10579381 10579381 C T SLX4IP Silent p.I99I 0.25 TCGA-ZF-A9RC-01 20 13755838 13755838 A G ESF1 Missense_Mutation p.F372L 0.22 deleterious(0) probably_damaging(0.97) TCGA-ZF-A9RC-01 20 1532451 1532451 G A SIRPD Missense_Mutation p.R103C 0.18 deleterious(0.04) probably_damaging(0.982) TCGA-ZF-A9RC-01 20 1600656 1600656 G A SIRPB1 5'Flank 0.29 TCGA-ZF-A9RC-01 20 19955883 19955883 C G RIN2 Missense_Mutation p.P454R 0.33 tolerated(0.17) benign(0.271) TCGA-ZF-A9RC-01 20 19981338 19981338 G A RIN2 Missense_Mutation p.E865K 0.05 tolerated(0.06) probably_damaging(0.957) TCGA-ZF-A9RC-01 20 23029163 23029163 C T THBD Missense_Mutation p.D327N 0.29 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 20 23345818 23345818 G T GZF1 Silent p.P266P 0.23 TCGA-ZF-A9RC-01 20 30053434 30053434 G A DEFB124 Nonsense_Mutation p.Q31* 0.20 TCGA-ZF-A9RC-01 20 30193235 30193235 C T ID1 Silent p.P15P 0.08 TCGA-ZF-A9RC-01 20 30310042 30310042 C T BCL2L1 5'UTR 0.18 TCGA-ZF-A9RC-01 20 30418869 30418869 C T MYLK2 Missense_Mutation p.S450L 0.11 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RC-01 20 30522626 30522626 C T TTLL9 Silent p.I313I 0.12 TCGA-ZF-A9RC-01 20 30584813 30584813 C T XKR7 Silent p.F431F 0.25 TCGA-ZF-A9RC-01 20 30790013 30790013 G A PLAGL2 5'UTR 0.11 TCGA-ZF-A9RC-01 20 31025057 31025057 C T ASXL1 Silent p.I1514I 0.08 TCGA-ZF-A9RC-01 20 3145259 3145259 C G LZTS3 Silent p.L621L 0.13 TCGA-ZF-A9RC-01 20 32194825 32194825 G A CBFA2T2 Missense_Mutation p.R42K 0.12 deleterious(0.03) possibly_damaging(0.881) TCGA-ZF-A9RC-01 20 32198981 32198981 C G CBFA2T2 Missense_Mutation p.S96C 0.09 deleterious(0.01) possibly_damaging(0.827) TCGA-ZF-A9RC-01 20 33114081 33114081 G A DYNLRB1 Silent p.V4V 0.18 TCGA-ZF-A9RC-01 20 33872189 33872189 G A EIF6 Silent p.F34F 0.17 TCGA-ZF-A9RC-01 20 34091670 34091670 G A CEP250 Missense_Mutation p.E1825K 0.24 benign(0.005) TCGA-ZF-A9RC-01 20 34144066 34144066 G A ERGIC3 Intron 0.18 TCGA-ZF-A9RC-01 20 34459591 34459591 G - PHF20 Frame_Shift_Del p.E375Kfs*9 0.15 TCGA-ZF-A9RC-01 20 34535466 34535466 C G PHF20 Missense_Mutation p.L986V 0.12 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 20 36407633 36407633 G A CTNNBL1 Missense_Mutation p.M309I 0.12 tolerated(0.07) possibly_damaging(0.491) TCGA-ZF-A9RC-01 20 37632410 37632410 G T DHX35 Missense_Mutation p.V291L 0.18 tolerated(0.19) benign(0.028) TCGA-ZF-A9RC-01 20 44004026 44004026 C G TP53TG5 Missense_Mutation p.E141Q 0.22 tolerated(0.27) benign(0.027) TCGA-ZF-A9RC-01 20 44180784 44180784 G A WFDC8 Missense_Mutation p.R203C 0.09 tolerated(0.18) benign(0.028) TCGA-ZF-A9RC-01 20 44672550 44672550 G C SLC12A5 Missense_Mutation p.E481Q 0.11 deleterious(0.03) probably_damaging(0.948) TCGA-ZF-A9RC-01 20 44695813 44695813 C T NCOA5 Silent p.L170L 0.14 TCGA-ZF-A9RC-01 20 45618709 45618709 G A EYA2 Silent p.L20L 0.10 TCGA-ZF-A9RC-01 20 46275985 46275985 C T NCOA3 Nonsense_Mutation p.Q1141* 0.10 TCGA-ZF-A9RC-01 20 47691370 47691370 G A CSE1L Missense_Mutation p.R372K 0.09 tolerated(0.09) possibly_damaging(0.597) TCGA-ZF-A9RC-01 20 47733705 47733705 G T STAU1 Silent p.I530I 0.13 TCGA-ZF-A9RC-01 20 49194981 49194981 C T PTPN1 Missense_Mutation p.H173Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 20 49518595 49518595 C T ADNP Missense_Mutation p.E54K 0.10 tolerated(0.84) benign(0.106) TCGA-ZF-A9RC-01 20 54579153 54579153 G A CBLN4 Silent p.V25V 0.17 TCGA-ZF-A9RC-01 20 55108525 55108525 G A FAM209B Missense_Mutation p.R43Q 0.23 tolerated(0.06) probably_damaging(0.979) TCGA-ZF-A9RC-01 20 58330357 58330357 C T PHACTR3 Missense_Mutation p.T160I 0.18 tolerated(0.4) benign(0.021) TCGA-ZF-A9RC-01 20 58563965 58563965 G A CDH26 Missense_Mutation p.D344N 0.29 tolerated(0.09) probably_damaging(0.995) TCGA-ZF-A9RC-01 20 61880196 61880196 A C NKAIN4 Missense_Mutation p.F82V 0.10 deleterious(0.03) probably_damaging(0.91) TCGA-ZF-A9RC-01 20 62187587 62187587 G A C20orf195 Missense_Mutation p.D191N 0.08 tolerated(0.11) probably_damaging(0.999) TCGA-ZF-A9RC-01 21 10908855 10908855 C T TPTE Nonsense_Mutation p.W497* 0.10 TCGA-ZF-A9RC-01 21 15561505 15561505 C G LIPI Missense_Mutation p.Q115H 0.35 tolerated(0.26) benign(0.011) TCGA-ZF-A9RC-01 21 15755500 15755500 C G HSPA13 5'UTR 0.31 TCGA-ZF-A9RC-01 21 16340601 16340601 G T NRIP1 5'UTR 0.41 TCGA-ZF-A9RC-01 21 17214771 17214771 C T USP25 Missense_Mutation p.S750L 0.08 deleterious(0.01) benign(0.001) TCGA-ZF-A9RC-01 21 30257653 30257653 G A N6AMT1 Silent p.N5N 0.25 TCGA-ZF-A9RC-01 21 30339384 30339384 C T LTN1 Missense_Mutation p.E523K 0.10 tolerated(0.43) benign(0.001) TCGA-ZF-A9RC-01 21 32493114 32493116 GCC - TIAM1 In_Frame_Del p.R1449del 0.29 TCGA-ZF-A9RC-01 21 33057434 33057434 C T SCAF4 Missense_Mutation p.G806S 0.22 unknown(0) TCGA-ZF-A9RC-01 21 34900515 34900515 T C GART Missense_Mutation p.K342E 0.33 tolerated(1) benign(0.001) TCGA-ZF-A9RC-01 21 36259214 36259214 C T RUNX1 Missense_Mutation p.D93N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RC-01 21 37410549 37410549 G A SETD4 Missense_Mutation p.L363F 0.10 deleterious(0) probably_damaging(0.956) TCGA-ZF-A9RC-01 21 37775105 37775105 G A CHAF1B Missense_Mutation p.R238H 0.11 deleterious(0) possibly_damaging(0.901) TCGA-ZF-A9RC-01 21 40194793 40194793 C T ETS2 Nonsense_Mutation p.Q464* 0.14 TCGA-ZF-A9RC-01 21 46000287 46000287 C T KRTAP10-5 Missense_Mutation p.E57K 0.18 tolerated(0.43) unknown(0) TCGA-ZF-A9RC-01 22 20819441 20819441 G A KLHL22 Silent p.S272S 0.06 TCGA-ZF-A9RC-01 22 20819711 20819711 G A KLHL22 Silent p.F182F 0.07 TCGA-ZF-A9RC-01 22 21384612 21384612 G C SLC7A4 Silent p.L337L 0.62 TCGA-ZF-A9RC-01 22 21988430 21988430 G A CCDC116 Silent p.K64K 0.19 TCGA-ZF-A9RC-01 22 23487510 23487510 C T RAB36 5'Flank 0.39 TCGA-ZF-A9RC-01 22 29884965 29884965 G C NEFH Missense_Mutation p.V446L 0.22 tolerated(0.08) unknown(0) TCGA-ZF-A9RC-01 22 30659896 30659896 C T OSM Missense_Mutation p.M245I 0.13 tolerated(0.13) benign(0.017) TCGA-ZF-A9RC-01 22 30682900 30682900 C T GATSL3 Silent p.Q181Q 0.12 TCGA-ZF-A9RC-01 22 31969138 31969138 G A SFI1 Missense_Mutation p.R287Q 0.13 tolerated(0.32) benign(0.009) TCGA-ZF-A9RC-01 22 32555138 32555138 G A C22orf42 Missense_Mutation p.P22L 0.21 tolerated_low_confidence(0.31) possibly_damaging(0.851) TCGA-ZF-A9RC-01 22 38073013 38073013 G A LGALS1 Silent p.L10L 0.17 TCGA-ZF-A9RC-01 22 39421090 39421090 G A APOBEC3D Missense_Mutation p.E76K 0.26 tolerated(0.63) benign(0.058) TCGA-ZF-A9RC-01 22 40367136 40367136 G A GRAP2 3'UTR 0.30 TCGA-ZF-A9RC-01 22 40415314 40415314 T C FAM83F Missense_Mutation p.L211P 0.24 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RC-01 22 41542802 41542802 C G EP300 Missense_Mutation p.R705G 0.09 unknown(0) TCGA-ZF-A9RC-01 22 42997992 42997992 T G POLDIP3 Missense_Mutation p.N174T 0.12 tolerated(0.37) benign(0.002) TCGA-ZF-A9RC-01 22 44385046 44385046 A G SAMM50 Silent p.P377P 0.21 TCGA-ZF-A9RC-01 22 45750897 45750897 G A SMC1B Silent p.N1020N 0.14 TCGA-ZF-A9RC-01 22 50280475 50280475 G A ZBED4 Silent p.S1055S 0.21 TCGA-ZF-A9RC-01 22 50682351 50682351 G A TUBGCP6 Nonsense_Mutation p.Q180* 0.14 TCGA-ZF-A9RC-01 22 50968116 50968116 C T TYMP Missense_Mutation p.G8E 0.33 tolerated_low_confidence(0.25) probably_damaging(0.969) TCGA-ZF-A9RC-01 2 106729128 106729128 G A UXS1 Nonsense_Mutation p.Q285* 0.16 TCGA-ZF-A9RC-01 2 108626976 108626976 G A SLC5A7 Missense_Mutation p.D468N 0.07 tolerated(0.24) benign(0.002) TCGA-ZF-A9RC-01 2 109300437 109300437 G A LIMS1 Silent p.E382E 0.08 TCGA-ZF-A9RC-01 2 10932044 10932044 C T PDIA6 Missense_Mutation p.S154N 0.19 tolerated(0.12) benign(0.001) TCGA-ZF-A9RC-01 2 109347256 109347256 A G RANBP2 Missense_Mutation p.Q56R 0.11 deleterious(0.04) benign(0.007) TCGA-ZF-A9RC-01 2 109383501 109383501 G A RANBP2 Missense_Mutation p.R2169K 0.09 tolerated(1) benign(0.194) TCGA-ZF-A9RC-01 2 111395637 111395637 C T BUB1 Silent p.L1054L 0.11 TCGA-ZF-A9RC-01 2 113088888 113088888 C G ZC3H6 Missense_Mutation p.S798C 0.18 deleterious(0.05) possibly_damaging(0.907) TCGA-ZF-A9RC-01 2 113089382 113089382 C T ZC3H6 Missense_Mutation p.P963S 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-ZF-A9RC-01 2 113942559 113942559 C T PSD4 Missense_Mutation p.S361F 0.12 tolerated_low_confidence(0.26) benign(0.162) TCGA-ZF-A9RC-01 2 11720921 11720921 G A GREB1 Silent p.K288K 0.06 TCGA-ZF-A9RC-01 2 120003079 120003079 G A STEAP3 Missense_Mutation p.E13K 0.11 tolerated(0.12) benign(0.064) TCGA-ZF-A9RC-01 2 135712237 135712237 T G CCNT2 3'UTR 0.15 TCGA-ZF-A9RC-01 2 137917851 137917851 C T THSD7B Missense_Mutation p.P480S 0.14 tolerated(0.12) possibly_damaging(0.803) TCGA-ZF-A9RC-01 2 152222618 152222618 A C TNFAIP6 Missense_Mutation p.Y94S 0.05 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 2 152522654 152522654 C A NEB Missense_Mutation p.D1661Y 0.19 probably_damaging(1) TCGA-ZF-A9RC-01 2 160050855 160050855 C T TANC1 Missense_Mutation p.H944Y 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-A9RC-01 2 160690594 160690594 T G LY75-CD302 Missense_Mutation p.T1268P 0.24 tolerated(0.38) benign(0.022) TCGA-ZF-A9RC-01 2 160706495 160706495 T C LY75-CD302 Missense_Mutation p.E1049G 0.08 tolerated(0.33) benign(0.001) TCGA-ZF-A9RC-01 2 160869829 160869829 C G PLA2R1 Missense_Mutation p.D537H 0.13 deleterious(0) possibly_damaging(0.687) TCGA-ZF-A9RC-01 2 162849787 162849787 G A DPP4 3'UTR 0.24 TCGA-ZF-A9RC-01 2 1651960 1651960 G A PXDN Missense_Mutation p.R1198W 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 2 166231402 166231402 C T SCN2A Nonsense_Mutation p.Q1394* 0.19 TCGA-ZF-A9RC-01 2 167284396 167284396 T G SCN7A Missense_Mutation p.I919L 0.21 tolerated(0.15) benign(0.152) TCGA-ZF-A9RC-01 2 167313510 167313510 C A SCN7A Missense_Mutation p.S387I 0.19 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9RC-01 2 170027067 170027067 C T LRP2 Missense_Mutation p.D3792N 0.10 probably_damaging(0.995) TCGA-ZF-A9RC-01 2 170502304 170502304 C T CCDC173 3'UTR 0.25 TCGA-ZF-A9RC-01 2 172409896 172409896 C T CYBRD1 Missense_Mutation p.P148L 0.35 deleterious(0) probably_damaging(0.979) TCGA-ZF-A9RC-01 2 172669970 172669970 C T SLC25A12 Silent p.V350V 0.13 TCGA-ZF-A9RC-01 2 172965223 172965223 G A DLX2 3'UTR 0.30 TCGA-ZF-A9RC-01 2 175664883 175664883 C A CHN1 Silent p.V447V 0.21 TCGA-ZF-A9RC-01 2 176043918 176043918 G A ATP5G3 Nonsense_Mutation p.Q61* 0.10 TCGA-ZF-A9RC-01 2 178097072 178097072 G C NFE2L2 Intron 0.55 TCGA-ZF-A9RC-01 2 179247808 179247808 C G OSBPL6 Missense_Mutation p.P585R 0.16 deleterious(0) probably_damaging(0.962) TCGA-ZF-A9RC-01 2 179396658 179396658 G A TTN Missense_Mutation p.S34895L 0.17 TCGA-ZF-A9RC-01 2 179452256 179452256 A T TTN Missense_Mutation p.N21260K 0.13 TCGA-ZF-A9RC-01 2 179466260 179466260 G A TTN Silent p.V18488V 0.18 TCGA-ZF-A9RC-01 2 179471981 179471981 A G TTN Missense_Mutation p.L17783P 0.17 TCGA-ZF-A9RC-01 2 179544404 179544404 C T TTN Missense_Mutation p.E11196K 0.12 TCGA-ZF-A9RC-01 2 179597028 179597028 C T TTN Silent p.K5556K 0.14 TCGA-ZF-A9RC-01 2 179997075 179997075 G A SESTD1 Nonsense_Mutation p.Q310* 0.13 TCGA-ZF-A9RC-01 2 186678419 186678419 G A FSIP2 Missense_Mutation p.E6748K 0.14 possibly_damaging(0.718) TCGA-ZF-A9RC-01 2 187516774 187516774 A C ITGAV Missense_Mutation p.N488T 0.20 deleterious(0.05) benign(0.217) TCGA-ZF-A9RC-01 2 1926155 1926155 C T MYT1L Missense_Mutation p.M462I 0.20 tolerated(0.31) benign(0.026) TCGA-ZF-A9RC-01 2 202150039 202150039 C T CASP8 Nonsense_Mutation p.R494* 0.12 TCGA-ZF-A9RC-01 2 203152401 203152401 G T NOP58 Missense_Mutation p.L151F 0.31 deleterious(0.02) probably_damaging(0.912) TCGA-ZF-A9RC-01 2 203630305 203630305 A C FAM117B Missense_Mutation p.K530Q 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-ZF-A9RC-01 2 20508298 20508298 C T PUM2 Missense_Mutation p.R189H 0.25 tolerated_low_confidence(0.13) possibly_damaging(0.852) TCGA-ZF-A9RC-01 2 20508307 20508307 A C PUM2 Missense_Mutation p.V186G 0.30 tolerated_low_confidence(0.1) benign(0.381) TCGA-ZF-A9RC-01 2 206980787 206980787 C T AC007383.4 RNA 0.18 TCGA-ZF-A9RC-01 2 208618378 208618378 G A CCNYL1 Missense_Mutation p.D295N 0.30 deleterious(0) probably_damaging(0.984) TCGA-ZF-A9RC-01 2 209190134 209190134 C T PIKFYVE Nonsense_Mutation p.Q867* 0.09 TCGA-ZF-A9RC-01 2 209190135 209190135 A T PIKFYVE Missense_Mutation p.Q867L 0.09 deleterious(0) probably_damaging(0.95) TCGA-ZF-A9RC-01 2 21001202 21001202 C T C2orf43 Missense_Mutation p.E8K 0.07 tolerated(0.14) benign(0.15) TCGA-ZF-A9RC-01 2 213886821 213886821 C T IKZF2 Missense_Mutation p.R203Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 2 218712927 218712928 - C TNS1 Frame_Shift_Ins p.L647Tfs*49 0.19 TCGA-ZF-A9RC-01 2 219529467 219529467 G A RNF25 Nonsense_Mutation p.Q266* 0.22 TCGA-ZF-A9RC-01 2 219544431 219544431 G T STK36 Missense_Mutation p.M309I 0.29 deleterious(0.05) benign(0.009) TCGA-ZF-A9RC-01 2 219562316 219562316 G A STK36 Silent p.L964L 0.22 TCGA-ZF-A9RC-01 2 220431669 220431669 C T OBSL1 Missense_Mutation p.E673K 0.20 tolerated(0.09) benign(0.056) TCGA-ZF-A9RC-01 2 223161715 223161715 G A PAX3 Silent p.I101I 0.35 TCGA-ZF-A9RC-01 2 223917755 223917755 C G KCNE4 Silent p.L69L 0.20 TCGA-ZF-A9RC-01 2 227660224 227660224 G A IRS1 Silent p.L1077L 0.20 TCGA-ZF-A9RC-01 2 230662472 230662472 A G TRIP12 Silent p.D1111D 0.20 TCGA-ZF-A9RC-01 2 239000035 239000035 G A SCLY Intron 0.14 TCGA-ZF-A9RC-01 2 240961647 240961647 T C NDUFA10 Silent p.V62V 0.06 TCGA-ZF-A9RC-01 2 24990987 24990987 G A NCOA1 Intron 0.14 TCGA-ZF-A9RC-01 2 25965563 25965563 G A ASXL2 Missense_Mutation p.H1215Y 0.19 tolerated(0.14) benign(0.008) TCGA-ZF-A9RC-01 2 27746181 27746181 A T GCKR Missense_Mutation p.T585S 0.14 tolerated(0.61) benign(0.002) TCGA-ZF-A9RC-01 2 28771794 28771794 C T PLB1 Missense_Mutation p.S335F 0.13 deleterious(0) possibly_damaging(0.873) TCGA-ZF-A9RC-01 2 29038939 29038939 C T SPDYA Missense_Mutation p.S20L 0.21 tolerated(0.71) benign(0.005) TCGA-ZF-A9RC-01 2 29092987 29092987 C G TRMT61B Missense_Mutation p.E53Q 0.13 tolerated_low_confidence(0.1) benign(0.216) TCGA-ZF-A9RC-01 2 29445420 29445420 A T ALK Missense_Mutation p.M1138K 0.15 deleterious(0) benign(0.007) TCGA-ZF-A9RC-01 2 32639854 32639854 G A BIRC6 Missense_Mutation p.E499K 0.12 probably_damaging(0.98) TCGA-ZF-A9RC-01 2 32640101 32640101 C T BIRC6 Missense_Mutation p.S581L 0.08 benign(0.023) TCGA-ZF-A9RC-01 2 32689742 32689742 C T BIRC6 Missense_Mutation p.L1703F 0.12 probably_damaging(0.994) TCGA-ZF-A9RC-01 2 33335759 33335759 C T LTBP1 Missense_Mutation p.S325F 0.22 deleterious(0.04) possibly_damaging(0.905) TCGA-ZF-A9RC-01 2 42513428 42513428 G C EML4 Missense_Mutation p.R344T 0.22 deleterious(0) possibly_damaging(0.811) TCGA-ZF-A9RC-01 2 44471403 44471403 G A snoU13 5'Flank 0.40 TCGA-ZF-A9RC-01 2 45620192 45620192 C G SRBD1 Missense_Mutation p.E864Q 0.15 tolerated(0.76) benign(0.006) TCGA-ZF-A9RC-01 2 46770263 46770263 C T RHOQ Silent p.L26L 0.29 TCGA-ZF-A9RC-01 2 48018162 48018162 C T MSH6 Silent p.F119F 0.06 TCGA-ZF-A9RC-01 2 48808843 48808843 A G STON1-GTF2A1L Silent p.K357K 0.27 TCGA-ZF-A9RC-01 2 54133761 54133761 G A PSME4 Missense_Mutation p.R973C 0.09 tolerated(0.09) benign(0.014) TCGA-ZF-A9RC-01 2 54159117 54159117 G C PSME4 Missense_Mutation p.Q391E 0.28 tolerated(1) benign(0) TCGA-ZF-A9RC-01 2 54895545 54895545 G A SPTBN1 Missense_Mutation p.E2312K 0.13 tolerated(0.14) benign(0.158) TCGA-ZF-A9RC-01 2 61712929 61712929 C T XPO1 Missense_Mutation p.E828K 0.09 deleterious(0.01) benign(0.06) TCGA-ZF-A9RC-01 2 64794729 64794729 G A AFTPH Missense_Mutation p.E657K 0.06 tolerated(0.11) benign(0.335) TCGA-ZF-A9RC-01 2 65231130 65231130 G A SLC1A4 Missense_Mutation p.G205E 0.16 tolerated(0.7) possibly_damaging(0.826) TCGA-ZF-A9RC-01 2 65540838 65540838 G A SPRED2 Missense_Mutation p.H352Y 0.18 deleterious(0.04) probably_damaging(1) TCGA-ZF-A9RC-01 2 69573055 69573055 G A GFPT1 Silent p.V362V 0.17 TCGA-ZF-A9RC-01 2 69581639 69581639 G C GFPT1 Missense_Mutation p.P223A 0.06 tolerated(0.08) possibly_damaging(0.601) TCGA-ZF-A9RC-01 2 74328486 74328486 C A TET3 Missense_Mutation p.A1389D 0.09 deleterious(0.02) benign(0.077) TCGA-ZF-A9RC-01 2 74682246 74682246 G C INO80B Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-ZF-A9RC-01 2 84518094 84518094 T C FUNDC2P2 RNA 0.25 TCGA-ZF-A9RC-01 2 86258485 86258485 G A POLR1A Nonsense_Mutation p.Q1516* 0.09 TCGA-ZF-A9RC-01 2 86992262 86992262 G A RMND5A Missense_Mutation p.E212K 0.22 deleterious(0.01) possibly_damaging(0.728) TCGA-ZF-A9RC-01 2 89339927 89339927 G A IGKV1-12 Nonsense_Mutation p.Q49* 0.07 TCGA-ZF-A9RC-01 2 96550112 96550112 A C ANKRD36C Silent p.S83S 0.17 TCGA-ZF-A9RC-01 2 96936853 96936853 C T CIAO1 Nonsense_Mutation p.Q262* 0.09 TCGA-ZF-A9RC-01 2 9770312 9770312 C T YWHAQ Silent p.L90L 0.26 TCGA-ZF-A9RC-01 2 98744709 98744709 C G VWA3B Missense_Mutation p.S237C 0.10 deleterious(0.02) benign(0.111) TCGA-ZF-A9RC-01 2 98744789 98744789 C G VWA3B Missense_Mutation p.P264A 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-ZF-A9RC-01 3 101023077 101023077 C T IMPG2 Missense_Mutation p.M138I 0.18 tolerated(0.06) benign(0.091) TCGA-ZF-A9RC-01 3 101023103 101023103 C G IMPG2 Missense_Mutation p.G130R 0.16 tolerated(0.16) benign(0.266) TCGA-ZF-A9RC-01 3 10183798 10183798 C T VHL Silent p.L89L 0.32 TCGA-ZF-A9RC-01 3 111319679 111319679 G C CD96 Missense_Mutation p.L351F 0.13 deleterious(0.03) probably_damaging(0.987) TCGA-ZF-A9RC-01 3 111851950 111851950 C T GCSAM Silent p.L6L 0.07 TCGA-ZF-A9RC-01 3 111852082 111852082 T C GCSAM 5'UTR 0.33 TCGA-ZF-A9RC-01 3 111985089 111985089 G A SLC9C1 Missense_Mutation p.L292F 0.15 tolerated(0.47) benign(0.133) TCGA-ZF-A9RC-01 3 112066563 112066563 T C CD200 Missense_Mutation p.S219P 0.11 deleterious(0) probably_damaging(0.983) TCGA-ZF-A9RC-01 3 114026866 114026866 C T TIGIT Missense_Mutation p.A208V 0.19 tolerated(0.15) benign(0.01) TCGA-ZF-A9RC-01 3 119217492 119217492 C T TIMMDC1 5'UTR 0.14 TCGA-ZF-A9RC-01 3 121489360 121489360 C A IQCB1 Missense_Mutation p.R543S 0.28 tolerated(0.07) probably_damaging(0.996) TCGA-ZF-A9RC-01 3 122418383 122418383 C G PARP14 Missense_Mutation p.L328V 0.08 tolerated(0.25) benign(0.315) TCGA-ZF-A9RC-01 3 124165631 124165631 A G KALRN Missense_Mutation p.T1149A 0.20 tolerated(0.11) benign(0.017) TCGA-ZF-A9RC-01 3 126194453 126194453 C T ZXDC Missense_Mutation p.A86T 0.24 tolerated_low_confidence(0.61) benign(0.007) TCGA-ZF-A9RC-01 3 126260860 126260860 C T CHST13 Silent p.F155F 0.16 TCGA-ZF-A9RC-01 3 127294060 127294060 G A TPRA1 Silent p.L274L 0.24 TCGA-ZF-A9RC-01 3 128202736 128202736 C A GATA2 Missense_Mutation p.Q328H 0.06 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9RC-01 3 128979519 128979519 G A COPG1 Missense_Mutation p.V333I 0.11 tolerated(1) benign(0.006) TCGA-ZF-A9RC-01 3 129218907 129218907 G A IFT122 Missense_Mutation p.D842N 0.06 tolerated(0.06) probably_damaging(0.972) TCGA-ZF-A9RC-01 3 129324858 129324858 C T PLXND1 Missense_Mutation p.V209M 0.16 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 3 130742938 130742938 C A ASTE1 Missense_Mutation p.V405L 0.09 tolerated(0.7) benign(0.004) TCGA-ZF-A9RC-01 3 131101022 131101022 G A NUDT16 Missense_Mutation p.E91K 0.23 tolerated(0.17) possibly_damaging(0.706) TCGA-ZF-A9RC-01 3 131388549 131388549 T G CPNE4 Silent p.L217L 0.06 TCGA-ZF-A9RC-01 3 133664099 133664099 G A SLCO2A1 Missense_Mutation p.S434L 0.22 tolerated(0.26) benign(0.013) TCGA-ZF-A9RC-01 3 134078274 134078274 C G AMOTL2 Missense_Mutation p.R652T 0.28 deleterious(0.01) benign(0.171) TCGA-ZF-A9RC-01 3 141327397 141327397 G A RASA2 Missense_Mutation p.E695K 0.11 deleterious(0.01) possibly_damaging(0.67) TCGA-ZF-A9RC-01 3 141697415 141697415 C T TFDP2 Missense_Mutation p.D156N 0.10 deleterious(0.03) probably_damaging(1) TCGA-ZF-A9RC-01 3 143691520 143691520 C T C3orf58 Missense_Mutation p.R116C 0.42 tolerated(0.06) possibly_damaging(0.459) TCGA-ZF-A9RC-01 3 145828198 145828198 G A PLOD2 Silent p.L126L 0.09 TCGA-ZF-A9RC-01 3 148575327 148575327 C T CPB1 Silent p.I355I 0.09 TCGA-ZF-A9RC-01 3 148757904 148757904 C T HLTF Missense_Mutation p.E806K 0.22 tolerated(0.92) benign(0) TCGA-ZF-A9RC-01 3 150127517 150127517 C T TSC22D2 Missense_Mutation p.S127L 0.20 tolerated(0.16) benign(0.32) TCGA-ZF-A9RC-01 3 151166224 151166224 A G IGSF10 Silent p.S515S 0.20 TCGA-ZF-A9RC-01 3 156192557 156192557 G A KCNAB1 Silent p.E202E 0.21 TCGA-ZF-A9RC-01 3 15624391 15624391 G A HACL1 Silent p.I220I 0.37 TCGA-ZF-A9RC-01 3 156395769 156395769 G A TIPARP Missense_Mutation p.E95K 0.13 tolerated_low_confidence(0.6) benign(0.021) TCGA-ZF-A9RC-01 3 159610017 159610017 C T IQCJ-SCHIP1 Intron 0.14 TCGA-ZF-A9RC-01 3 169504460 169504460 A G MYNN Silent p.L609L 0.17 TCGA-ZF-A9RC-01 3 172353764 172353764 C T NCEH1 Missense_Mutation p.R224K 0.13 deleterious(0.02) possibly_damaging(0.907) TCGA-ZF-A9RC-01 3 178748730 178748730 G A ZMAT3 Missense_Mutation p.P110S 0.14 tolerated_low_confidence(0.26) benign(0.004) TCGA-ZF-A9RC-01 3 179527365 179527365 C A PEX5L Missense_Mutation p.A416S 0.17 tolerated(0.11) benign(0.034) TCGA-ZF-A9RC-01 3 179529601 179529601 A G PEX5L Missense_Mutation p.V381A 0.18 tolerated(0.53) possibly_damaging(0.531) TCGA-ZF-A9RC-01 3 184099309 184099309 G A CHRD Silent p.P136P 0.12 TCGA-ZF-A9RC-01 3 184870559 184870559 A C C3orf70 Missense_Mutation p.L18R 0.14 deleterious_low_confidence(0.03) benign(0.178) TCGA-ZF-A9RC-01 3 186301674 186301674 G A DNAJB11 Missense_Mutation p.R254K 0.18 tolerated(0.51) benign(0.008) TCGA-ZF-A9RC-01 3 187416547 187416547 G T RTP2 Silent p.I139I 0.23 TCGA-ZF-A9RC-01 3 191888293 191888293 C T FGF12 Silent p.V189V 0.06 TCGA-ZF-A9RC-01 3 196921431 196921431 A T DLG1 Silent p.P116P 0.11 TCGA-ZF-A9RC-01 3 2942416 2942416 G C CNTN4 Missense_Mutation p.E330Q 0.10 tolerated(0.18) possibly_damaging(0.822) TCGA-ZF-A9RC-01 3 3186273 3186273 G C TRNT1 Missense_Mutation p.D163H 0.23 deleterious(0) probably_damaging(0.947) TCGA-ZF-A9RC-01 3 33552169 33552169 G A CLASP2 Nonsense_Mutation p.Q1408* 0.41 TCGA-ZF-A9RC-01 3 36873926 36873926 A G TRANK1 Missense_Mutation p.I2339T 0.06 tolerated(0.07) benign(0.169) TCGA-ZF-A9RC-01 3 37360556 37360556 A C GOLGA4 Missense_Mutation p.K494N 0.05 probably_damaging(1) TCGA-ZF-A9RC-01 3 39162529 39162529 C T TTC21A Silent p.F322F 0.13 TCGA-ZF-A9RC-01 3 39162558 39162558 C T TTC21A Missense_Mutation p.S332L 0.28 tolerated(0.08) benign(0.1) TCGA-ZF-A9RC-01 3 39226141 39226141 G A XIRP1 Missense_Mutation p.S1599L 0.19 tolerated(0.05) benign(0.012) TCGA-ZF-A9RC-01 3 40500162 40500162 G A RPL14 Silent p.V45V 0.12 TCGA-ZF-A9RC-01 3 42251792 42251792 G A TRAK1 Intron 0.19 TCGA-ZF-A9RC-01 3 43122264 43122264 C T POMGNT2 Silent p.L220L 0.37 TCGA-ZF-A9RC-01 3 47125589 47125589 G C SETD2 Missense_Mutation p.S1894C 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 3 47125625 47125625 T C SETD2 Missense_Mutation p.K1882R 0.11 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RC-01 3 47125627 47125627 C A SETD2 Silent p.L1881L 0.12 TCGA-ZF-A9RC-01 3 47476592 47476592 C T SCAP Missense_Mutation p.G53E 0.11 deleterious(0.03) benign(0.254) TCGA-ZF-A9RC-01 3 47539848 47539848 G A ELP6 Silent p.L200L 0.24 TCGA-ZF-A9RC-01 3 48420948 48420948 C G FBXW12 Missense_Mutation p.S225C 0.24 deleterious(0) probably_damaging(0.971) TCGA-ZF-A9RC-01 3 48623588 48623588 G A COL7A1 Silent p.F1214F 0.14 TCGA-ZF-A9RC-01 3 48665960 48665960 G A SLC26A6 Silent p.V569V 0.41 TCGA-ZF-A9RC-01 3 49064314 49064314 A G IMPDH2 Silent p.L209L 0.12 TCGA-ZF-A9RC-01 3 49153530 49153530 C G USP19 Missense_Mutation p.R474P 0.16 deleterious(0.03) possibly_damaging(0.695) TCGA-ZF-A9RC-01 3 49294356 49294356 C T CCDC36 Nonsense_Mutation p.Q476* 0.11 TCGA-ZF-A9RC-01 3 49394958 49394958 C T GPX1 Missense_Mutation p.D159N 0.23 deleterious(0.04) possibly_damaging(0.508) TCGA-ZF-A9RC-01 3 49700740 49700740 C A BSN Missense_Mutation p.H3717N 0.12 unknown(0) TCGA-ZF-A9RC-01 3 49739828 49739828 G A RNF123 Missense_Mutation p.S540N 0.05 deleterious(0.05) benign(0.004) TCGA-ZF-A9RC-01 3 50256319 50256319 C T SLC38A3 RNA 0.17 TCGA-ZF-A9RC-01 3 52172281 52172281 C T POC1A Silent p.P239P 0.25 TCGA-ZF-A9RC-01 3 52294512 52294512 G A WDR82 Silent p.L144L 0.14 TCGA-ZF-A9RC-01 3 52723322 52723322 C T GNL3 Intron 0.10 TCGA-ZF-A9RC-01 3 53133407 53133407 C T RFT1 Missense_Mutation p.E400K 0.22 deleterious(0) possibly_damaging(0.794) TCGA-ZF-A9RC-01 3 53855796 53855796 G A CHDH Missense_Mutation p.A288V 0.11 tolerated(0.08) benign(0.098) TCGA-ZF-A9RC-01 3 53856611 53856611 G C CHDH Silent p.L254L 0.12 TCGA-ZF-A9RC-01 3 53904098 53904098 G A ACTR8 Nonsense_Mutation p.Q548* 0.17 TCGA-ZF-A9RC-01 3 57893610 57893610 G C SLMAP Splice_Site p.X467_splice 0.27 TCGA-ZF-A9RC-01 3 58296276 58296276 C T RPP14 Silent p.F40F 0.11 TCGA-ZF-A9RC-01 3 58622026 58622026 C T FAM3D Missense_Mutation p.E194K 0.18 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RC-01 3 58631328 58631328 G A FAM3D Silent p.L57L 0.18 TCGA-ZF-A9RC-01 3 59999833 59999833 A G FHIT Missense_Mutation p.L50P 0.08 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 3 64132620 64132620 G A PRICKLE2 Nonsense_Mutation p.Q516* 0.15 TCGA-ZF-A9RC-01 3 69053539 69053539 G A EOGT Silent p.L204L 0.16 TCGA-ZF-A9RC-01 3 73108228 73108228 G A PPP4R2 Missense_Mutation p.D110N 0.11 deleterious(0) possibly_damaging(0.802) TCGA-ZF-A9RC-01 3 88205252 88205252 C T C3orf38 Missense_Mutation p.L153F 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-A9RC-01 3 9512243 9512243 C T SETD5 Missense_Mutation p.S942F 0.42 tolerated(0.05) benign(0.406) TCGA-ZF-A9RC-01 3 9695324 9695324 G A MTMR14 Missense_Mutation p.R60K 0.27 tolerated(0.39) possibly_damaging(0.867) TCGA-ZF-A9RC-01 3 99979886 99979886 G T TBC1D23 Silent p.P8P 0.15 TCGA-ZF-A9RC-01 4 100065424 100065424 C T ADH4 5'UTR 0.16 TCGA-ZF-A9RC-01 4 10542221 10542221 T C CLNK Missense_Mutation p.I167V 0.39 tolerated(0.35) benign(0.004) TCGA-ZF-A9RC-01 4 114824434 114824434 G A ARSJ Nonsense_Mutation p.Q266* 0.35 TCGA-ZF-A9RC-01 4 119660367 119660367 G A SEC24D Nonsense_Mutation p.Q772* 0.18 TCGA-ZF-A9RC-01 4 123151145 123151145 C T KIAA1109 Silent p.I1034I 0.25 TCGA-ZF-A9RC-01 4 126240797 126240797 G A FAT4 Silent p.V1077V 0.32 TCGA-ZF-A9RC-01 4 128806936 128806936 C G PLK4 Silent p.L137L 0.08 TCGA-ZF-A9RC-01 4 128870965 128870965 G A MFSD8 Silent p.L64L 0.39 TCGA-ZF-A9RC-01 4 134072435 134072435 C T PCDH10 Silent p.F380F 0.24 TCGA-ZF-A9RC-01 4 139964271 139964271 C G CCRN4L Silent p.L78L 0.30 TCGA-ZF-A9RC-01 4 140216200 140216200 G A NDUFC1 Silent p.I56I 0.20 TCGA-ZF-A9RC-01 4 141591909 141591909 C G TBC1D9 Missense_Mutation p.E411Q 0.16 tolerated(0.35) benign(0.316) TCGA-ZF-A9RC-01 4 155237115 155237115 A G DCHS2 Missense_Mutation p.L1227S 0.20 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 4 159133804 159133804 C G TMEM144 5'UTR 0.15 TCGA-ZF-A9RC-01 4 169138148 169138148 T A DDX60 Missense_Mutation p.D1692V 0.17 deleterious(0) probably_damaging(0.978) TCGA-ZF-A9RC-01 4 187516891 187516891 C T FAT1 Missense_Mutation p.E4364K 0.16 probably_damaging(0.998) TCGA-ZF-A9RC-01 4 52883351 52883351 G A LRRC66 Silent p.F143F 0.44 TCGA-ZF-A9RC-01 4 55144103 55144103 A G PDGFRA Silent p.E644E 0.31 TCGA-ZF-A9RC-01 4 57897341 57897341 A G IGFBP7 3'UTR 0.33 TCGA-ZF-A9RC-01 4 6698763 6698763 C T S100P Silent p.L94L 0.16 TCGA-ZF-A9RC-01 4 69337205 69337205 T C TMPRSS11E Silent p.H118H 0.05 TCGA-ZF-A9RC-01 4 69535849 69535849 T A UGT2B15 Missense_Mutation p.E163V 0.24 deleterious(0) possibly_damaging(0.904) TCGA-ZF-A9RC-01 4 7026936 7026936 T C TBC1D14 Missense_Mutation p.F655L 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-ZF-A9RC-01 4 74442170 74442170 A G RASSF6 Silent p.L331L 0.15 TCGA-ZF-A9RC-01 4 77661698 77661698 G A SHROOM3 Missense_Mutation p.R791Q 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-A9RC-01 4 79434693 79434693 G A FRAS1 Silent p.L3387L 0.44 TCGA-ZF-A9RC-01 4 83277772 83277773 - C HNRNPD Frame_Shift_Ins p.Y307Ifs*2 0.09 TCGA-ZF-A9RC-01 4 84379565 84379565 G A MRPS18C Missense_Mutation p.D73N 0.16 deleterious(0.05) possibly_damaging(0.649) TCGA-ZF-A9RC-01 4 8465793 8465793 C T TRMT44 Missense_Mutation p.P429S 0.19 deleterious(0) probably_damaging(0.956) TCGA-ZF-A9RC-01 4 88533735 88533735 G A DSPP Missense_Mutation p.A133T 0.07 benign(0.367) TCGA-ZF-A9RC-01 4 88766913 88766913 C G MEPE Missense_Mutation p.T298R 0.24 tolerated(0.13) possibly_damaging(0.649) TCGA-ZF-A9RC-01 5 1083991 1083991 G A SLC12A7 Missense_Mutation p.S333L 0.07 deleterious(0.01) benign(0.04) TCGA-ZF-A9RC-01 5 110428132 110428132 G A WDR36 Missense_Mutation p.R49K 0.26 tolerated_low_confidence(0.36) benign(0) TCGA-ZF-A9RC-01 5 112901603 112901603 C A YTHDC2 Missense_Mutation p.A910E 0.17 deleterious(0) possibly_damaging(0.837) TCGA-ZF-A9RC-01 5 1210684 1210684 G A SLC6A19 Missense_Mutation p.E157K 0.11 tolerated(0.85) benign(0.005) TCGA-ZF-A9RC-01 5 121411186 121411186 C T LOX Missense_Mutation p.R264K 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9RC-01 5 123982412 123982412 A G ZNF608 Missense_Mutation p.M1222T 0.16 tolerated(0.34) probably_damaging(0.964) TCGA-ZF-A9RC-01 5 125828671 125828671 C T GRAMD3 3'UTR 0.06 TCGA-ZF-A9RC-01 5 137519213 137519213 T C KIF20A Missense_Mutation p.V361A 0.34 tolerated(0.49) benign(0.023) TCGA-ZF-A9RC-01 5 13766218 13766218 A T DNAH5 Missense_Mutation p.M3323K 0.09 benign(0.002) TCGA-ZF-A9RC-01 5 139906654 139906654 A G ANKHD1 Silent p.V1694V 0.41 TCGA-ZF-A9RC-01 5 139946644 139946644 C T SLC35A4 5'UTR 0.24 TCGA-ZF-A9RC-01 5 145557131 145557131 G A LARS Missense_Mutation p.S35F 0.10 deleterious(0.03) benign(0.012) TCGA-ZF-A9RC-01 5 162898429 162898429 G A HMMR Missense_Mutation p.E204K 0.19 tolerated(0.27) benign(0.01) TCGA-ZF-A9RC-01 5 16465274 16465289 CCCACGGCCACCAGTA - ZNF622 Frame_Shift_Del p.T163Pfs*97 0.19 TCGA-ZF-A9RC-01 5 167653205 167653205 G A TENM2 Missense_Mutation p.D1741N 0.33 deleterious(0.01) possibly_damaging(0.821) TCGA-ZF-A9RC-01 5 170722905 170722905 G A RANBP17 Silent p.L1019L 0.15 TCGA-ZF-A9RC-01 5 172196668 172196668 C T DUSP1 Missense_Mutation p.E215K 0.18 tolerated(0.25) benign(0.102) TCGA-ZF-A9RC-01 5 175795030 175795030 G A ARL10 Intron 0.14 TCGA-ZF-A9RC-01 5 176778247 176778247 G A LMAN2 Missense_Mutation p.T81I 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 5 177546903 177546903 C T N4BP3 Missense_Mutation p.R107C 0.12 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RC-01 5 179291017 179291017 C T TBC1D9B Missense_Mutation p.G1062R 0.18 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 5 31299615 31299615 G A CDH6 Missense_Mutation p.E230K 0.17 deleterious(0.02) benign(0.045) TCGA-ZF-A9RC-01 5 31305404 31305404 G A CDH6 Missense_Mutation p.E375K 0.20 tolerated(0.15) benign(0.221) TCGA-ZF-A9RC-01 5 32090187 32090187 T C PDZD2 Silent p.H2211H 0.19 TCGA-ZF-A9RC-01 5 33527309 33527309 T G ADAMTS12 Missense_Mutation p.K1590T 0.06 tolerated(0.38) unknown(0) TCGA-ZF-A9RC-01 5 33641984 33641984 G A ADAMTS12 Missense_Mutation p.P550L 0.22 deleterious(0.03) benign(0.1) TCGA-ZF-A9RC-01 5 34008101 34008101 G A AMACR Silent p.V8V 0.21 TCGA-ZF-A9RC-01 5 34008175 34008175 C T AMACR 5'Flank 0.24 TCGA-ZF-A9RC-01 5 34867123 34867123 G A TTC23L Silent p.Q263Q 0.14 TCGA-ZF-A9RC-01 5 37157850 37157850 C T C5orf42 Missense_Mutation p.V2627I 0.12 tolerated(0.87) benign(0.009) TCGA-ZF-A9RC-01 5 38933076 38933076 A G OSMR Missense_Mutation p.R824G 0.07 tolerated(0.47) benign(0.003) TCGA-ZF-A9RC-01 5 40841641 40841641 C T CARD6 Missense_Mutation p.L53F 0.07 deleterious(0) possibly_damaging(0.544) TCGA-ZF-A9RC-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.28 tolerated(0.25) benign(0.064) TCGA-ZF-A9RC-01 5 41153994 41153994 A G C6 Silent p.F736F 0.08 TCGA-ZF-A9RC-01 5 41313677 41313677 G A PLCXD3 3'UTR 0.16 TCGA-ZF-A9RC-01 5 42801094 42801094 C T SEPP1 Missense_Mutation p.D292N 0.30 tolerated_low_confidence(0.19) possibly_damaging(0.829) TCGA-ZF-A9RC-01 5 54555737 54555737 C T DHX29 Silent p.L1332L 0.07 TCGA-ZF-A9RC-01 5 64037000 64037000 T C SREK1IP1 Missense_Mutation p.N30S 0.64 deleterious(0) probably_damaging(0.983) TCGA-ZF-A9RC-01 5 64859170 64859170 G A PPWD1 Silent p.Q11Q 0.21 TCGA-ZF-A9RC-01 5 665151 665151 G A TPPP 3'UTR 0.15 TCGA-ZF-A9RC-01 5 68504103 68504103 G A CENPH Missense_Mutation p.E190K 0.22 tolerated(0.19) possibly_damaging(0.811) TCGA-ZF-A9RC-01 5 70892167 70892167 G A MCCC2 Missense_Mutation p.R86K 0.11 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-ZF-A9RC-01 5 71495171 71495171 G T MAP1B Missense_Mutation p.G1997C 0.11 probably_damaging(0.975) TCGA-ZF-A9RC-01 5 72419270 72419270 T C TMEM171 Missense_Mutation p.C24R 0.33 deleterious(0) benign(0.18) TCGA-ZF-A9RC-01 5 73931551 73931551 C T ENC1 Missense_Mutation p.E254K 0.25 tolerated(0.31) benign(0.077) TCGA-ZF-A9RC-01 5 7743780 7743780 G C ADCY2 Splice_Site p.X624_splice 0.10 TCGA-ZF-A9RC-01 5 79030589 79030589 G A CMYA5 Missense_Mutation p.E2001K 0.20 possibly_damaging(0.899) TCGA-ZF-A9RC-01 5 82833907 82833907 A G VCAN Silent p.Q1695Q 0.10 TCGA-ZF-A9RC-01 5 82836783 82836783 C G VCAN Nonsense_Mutation p.S2654* 0.39 TCGA-ZF-A9RC-01 5 95768780 95768780 G T PCSK1 5'UTR 0.10 TCGA-ZF-A9RC-01 5 96443095 96443095 T C LIX1 Missense_Mutation p.E119G 0.29 deleterious(0.01) possibly_damaging(0.526) TCGA-ZF-A9RC-01 6 101073163 101073176 ATGAGACAAATATC - ASCC3 Frame_Shift_Del p.L1559Ffs*19 0.15 TCGA-ZF-A9RC-01 6 110777624 110777624 A G SLC22A16 Intron 0.26 TCGA-ZF-A9RC-01 6 116575108 116575108 C T TSPYL4 Missense_Mutation p.D22N 0.15 tolerated(0.05) benign(0.002) TCGA-ZF-A9RC-01 6 119252744 119252744 C T MCM9 Missense_Mutation p.E49K 0.15 deleterious(0) probably_damaging(0.98) TCGA-ZF-A9RC-01 6 125283935 125283935 G A RP11-510H23.1 Intron 0.17 TCGA-ZF-A9RC-01 6 129634146 129634146 C T LAMA2 Silent p.L1105L 0.15 TCGA-ZF-A9RC-01 6 132643947 132643947 C G MOXD1 Silent p.L392L 0.33 TCGA-ZF-A9RC-01 6 138611013 138611013 G A KIAA1244 Silent p.L985L 0.09 TCGA-ZF-A9RC-01 6 145160397 145160397 C T UTRN Missense_Mutation p.S3385F 0.09 deleterious(0.04) benign(0.367) TCGA-ZF-A9RC-01 6 148795302 148795302 C G SASH1 Missense_Mutation p.Q191E 0.27 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-ZF-A9RC-01 6 152757197 152757197 C T SYNE1 Missense_Mutation p.E1397K 0.06 possibly_damaging(0.507) TCGA-ZF-A9RC-01 6 157527627 157527627 C T ARID1B Silent p.F1784F 0.14 TCGA-ZF-A9RC-01 6 16290809 16290809 G A GMPR Missense_Mutation p.D272N 0.59 tolerated(0.15) benign(0.003) TCGA-ZF-A9RC-01 6 166831715 166831715 T C RPS6KA2 Missense_Mutation p.K654E 0.08 deleterious(0.01) probably_damaging(0.925) TCGA-ZF-A9RC-01 6 17600920 17600920 G A FAM8A1 Missense_Mutation p.E94K 0.50 deleterious(0.03) probably_damaging(0.959) TCGA-ZF-A9RC-01 6 26388264 26388264 G A BTN2A2 Missense_Mutation p.E156K 0.20 tolerated(0.1) benign(0.158) TCGA-ZF-A9RC-01 6 2679554 2679554 G A MYLK4 Missense_Mutation p.P283S 0.06 tolerated(0.12) benign(0.094) TCGA-ZF-A9RC-01 6 27776127 27776127 G A HIST1H2AI Missense_Mutation p.G47E 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-ZF-A9RC-01 6 27778143 27778143 G A HIST1H3H Missense_Mutation p.E98K 0.36 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ZF-A9RC-01 6 29142012 29142012 C G OR2J2 Silent p.L200L 0.13 TCGA-ZF-A9RC-01 6 30676032 30676032 T C MDC1 Missense_Mutation p.Y775C 0.09 tolerated(0.15) benign(0.334) TCGA-ZF-A9RC-01 6 31847922 31847922 C T EHMT2 Missense_Mutation p.R1191H 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-ZF-A9RC-01 6 31929373 31929373 A T SKIV2L Missense_Mutation p.Q280L 0.17 tolerated(0.12) benign(0) TCGA-ZF-A9RC-01 6 31935772 31935772 A G SKIV2L Missense_Mutation p.D924G 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-ZF-A9RC-01 6 32784730 32784730 C T TAP2 Splice_Site p.X645_splice 0.10 TCGA-ZF-A9RC-01 6 34789559 34789559 C A UHRF1BP1 Silent p.I58I 0.08 TCGA-ZF-A9RC-01 6 34826202 34826202 C A UHRF1BP1 Missense_Mutation p.S690Y 0.19 deleterious(0) probably_damaging(0.954) TCGA-ZF-A9RC-01 6 35945031 35945031 G A SLC26A8 Silent p.L375L 0.19 TCGA-ZF-A9RC-01 6 36043700 36043700 C T MAPK14 Missense_Mutation p.P191S 0.07 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RC-01 6 4068966 4068966 A C FAM217A Silent p.A497A 0.10 TCGA-ZF-A9RC-01 6 41545790 41545790 G A FOXP4 Missense_Mutation p.D91N 0.22 tolerated(0.07) possibly_damaging(0.678) TCGA-ZF-A9RC-01 6 42986270 42986270 G A KLHDC3 Missense_Mutation p.E237K 0.27 tolerated(0.81) possibly_damaging(0.497) TCGA-ZF-A9RC-01 6 43479936 43479936 T A YIPF3 Missense_Mutation p.K341I 0.25 deleterious_low_confidence(0.01) benign(0.424) TCGA-ZF-A9RC-01 6 43578337 43578337 G A POLH Missense_Mutation p.G374E 0.14 deleterious(0.03) benign(0.223) TCGA-ZF-A9RC-01 6 44117968 44117968 G T TMEM63B Nonsense_Mutation p.E510* 0.15 TCGA-ZF-A9RC-01 6 46135200 46135200 G A ENPP5 Missense_Mutation p.S267F 0.15 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9RC-01 6 46216497 46216497 T C RCAN2 Missense_Mutation p.Q121R 0.07 tolerated(0.12) possibly_damaging(0.566) TCGA-ZF-A9RC-01 6 46825920 46825920 G A GPR116 Silent p.F1240F 0.13 TCGA-ZF-A9RC-01 6 51949710 51949710 G A PKHD1 Silent p.L8L 0.06 TCGA-ZF-A9RC-01 6 52268748 52268748 G C PAQR8 Missense_Mutation p.W246S 0.12 tolerated(0.41) benign(0.122) TCGA-ZF-A9RC-01 6 55142253 55142253 C T HCRTR2 Nonsense_Mutation p.Q280* 0.21 TCGA-ZF-A9RC-01 6 55620459 55620459 G T BMP5 Missense_Mutation p.H413N 0.32 tolerated(0.37) benign(0) TCGA-ZF-A9RC-01 6 56336935 56336935 C T DST Silent p.V4737V 0.28 TCGA-ZF-A9RC-01 6 56417578 56417578 C T DST Missense_Mutation p.D2715N 0.07 benign(0.425) TCGA-ZF-A9RC-01 6 56420411 56420411 C T DST Silent p.L2333L 0.07 TCGA-ZF-A9RC-01 6 70386023 70386023 T G LMBRD1 3'UTR 0.10 TCGA-ZF-A9RC-01 6 72011421 72011421 T C OGFRL1 Missense_Mutation p.M342T 0.15 tolerated(0.69) benign(0.001) TCGA-ZF-A9RC-01 6 7374133 7374133 C T CAGE1 Missense_Mutation p.E307K 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-ZF-A9RC-01 6 74345107 74345107 G C SLC17A5 Missense_Mutation p.Q273E 0.22 tolerated(0.38) benign(0.085) TCGA-ZF-A9RC-01 6 74512986 74512986 C G CD109 Missense_Mutation p.F974L 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 6 74516760 74516760 A C CD109 Missense_Mutation p.I1052L 0.23 deleterious(0.01) benign(0.213) TCGA-ZF-A9RC-01 6 7583313 7583313 G A DSP Missense_Mutation p.D1940N 0.10 benign(0.195) TCGA-ZF-A9RC-01 6 7583909 7583909 G C DSP Silent p.V2138V 0.12 TCGA-ZF-A9RC-01 6 83848844 83848844 C T DOPEY1 Nonsense_Mutation p.Q1695* 0.25 TCGA-ZF-A9RC-01 6 83878990 83878990 G A PGM3 Missense_Mutation p.A559V 0.09 deleterious(0.03) probably_damaging(0.976) TCGA-ZF-A9RC-01 6 84417650 84417650 C T SNAP91 5'UTR 0.41 TCGA-ZF-A9RC-01 6 89793541 89793541 C T PNRC1 Missense_Mutation p.H204Y 0.15 tolerated(0.06) possibly_damaging(0.87) TCGA-ZF-A9RC-01 6 94129050 94129050 G A EPHA7 Nonsense_Mutation p.Q4* 0.25 TCGA-ZF-A9RC-01 6 99283990 99283990 C T POU3F2 Missense_Mutation p.P414L 0.16 tolerated(0.06) probably_damaging(0.968) TCGA-ZF-A9RC-01 7 100417209 100417209 C T EPHB4 Missense_Mutation p.E423K 0.10 tolerated(0.09) benign(0.029) TCGA-ZF-A9RC-01 7 100473261 100473261 G A SRRT Missense_Mutation p.R17K 0.17 deleterious(0.03) unknown(0) TCGA-ZF-A9RC-01 7 100771815 100771815 G A SERPINE1 Silent p.A47A 0.13 TCGA-ZF-A9RC-01 7 100861424 100861424 C T ZNHIT1 5'UTR 0.12 TCGA-ZF-A9RC-01 7 103185709 103185709 C T RELN Missense_Mutation p.G2129S 0.09 tolerated(0.06) benign(0.052) TCGA-ZF-A9RC-01 7 105903860 105903860 T C NAMPT Missense_Mutation p.N316S 0.18 deleterious(0) benign(0.034) TCGA-ZF-A9RC-01 7 107557339 107557339 G C DLD Missense_Mutation p.E326Q 0.10 tolerated(0.16) benign(0.003) TCGA-ZF-A9RC-01 7 108212384 108212384 G A DNAJB9 Missense_Mutation p.E72K 0.08 tolerated(0.13) probably_damaging(0.97) TCGA-ZF-A9RC-01 7 110762784 110762784 T C LRRN3 5'UTR 0.25 TCGA-ZF-A9RC-01 7 114299437 114299437 A G FOXP2 Missense_Mutation p.K524E 0.12 deleterious(0.01) unknown(0) TCGA-ZF-A9RC-01 7 115624534 115624534 G A TFEC 5'UTR 0.20 TCGA-ZF-A9RC-01 7 116339702 116339702 A G MET Silent p.V188V 0.10 TCGA-ZF-A9RC-01 7 117246779 117246779 T C CFTR Missense_Mutation p.L987P 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 7 120935548 120935548 A G CPED1 Missense_Mutation p.R975G 0.16 deleterious(0.01) benign(0.015) TCGA-ZF-A9RC-01 7 124387150 124387150 G A GPR37 Missense_Mutation p.S424F 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9RC-01 7 124404846 124404846 G A GPR37 Missense_Mutation p.S62F 0.11 tolerated_low_confidence(0.08) benign(0.003) TCGA-ZF-A9RC-01 7 126882832 126882832 T A GRM8 Nonsense_Mutation p.K143* 0.16 TCGA-ZF-A9RC-01 7 127014816 127014816 C T ZNF800 Missense_Mutation p.E192K 0.14 tolerated(0.67) benign(0.021) TCGA-ZF-A9RC-01 7 129592424 129592424 C T UBE2H 5'UTR 0.16 TCGA-ZF-A9RC-01 7 129939107 129939107 C T CPA4 Intron 0.11 TCGA-ZF-A9RC-01 7 138978025 138978025 C T UBN2 Silent p.L1239L 0.12 TCGA-ZF-A9RC-01 7 138978697 138978697 C T UBN2 Silent p.L1322L 0.26 TCGA-ZF-A9RC-01 7 139164455 139164455 G A KLRG2 Missense_Mutation p.S308F 0.09 deleterious(0) probably_damaging(0.976) TCGA-ZF-A9RC-01 7 139316014 139316014 T C HIPK2 Missense_Mutation p.Q415R 0.27 deleterious(0.04) possibly_damaging(0.517) TCGA-ZF-A9RC-01 7 139662002 139662002 G A TBXAS1 Silent p.L415L 0.30 TCGA-ZF-A9RC-01 7 13971367 13971367 G A ETV1 Missense_Mutation p.R188C 0.08 deleterious(0.04) probably_damaging(0.932) TCGA-ZF-A9RC-01 7 141349062 141349062 G C AGK Splice_Site p.X326_splice 0.11 TCGA-ZF-A9RC-01 7 144060705 144060705 C G ARHGEF5 Missense_Mutation p.Q315E 0.24 tolerated(0.16) benign(0.002) TCGA-ZF-A9RC-01 7 150730891 150730891 G C ABCB8 Missense_Mutation p.E99Q 0.08 tolerated(0.4) benign(0.005) TCGA-ZF-A9RC-01 7 158560447 158560447 G A ESYT2 Silent p.I322I 0.10 TCGA-ZF-A9RC-01 7 20180736 20180736 G A MACC1 Missense_Mutation p.H798Y 0.09 deleterious(0.01) possibly_damaging(0.634) TCGA-ZF-A9RC-01 7 20691065 20691065 T C ABCB5 Missense_Mutation p.I452T 0.26 deleterious(0.01) possibly_damaging(0.812) TCGA-ZF-A9RC-01 7 21737789 21737789 C T DNAH11 Silent p.F2053F 0.11 TCGA-ZF-A9RC-01 7 23224756 23224756 C T NUPL2 Silent p.F63F 0.30 TCGA-ZF-A9RC-01 7 23224762 23224762 A T NUPL2 Missense_Mutation p.K65N 0.33 deleterious(0) possibly_damaging(0.904) TCGA-ZF-A9RC-01 7 26224967 26224967 C T NFE2L3 Missense_Mutation p.S550F 0.10 deleterious(0) probably_damaging(0.94) TCGA-ZF-A9RC-01 7 27134936 27134936 G A HOXA1 Missense_Mutation p.S199F 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-ZF-A9RC-01 7 27834003 27834003 C T TAX1BP1 Missense_Mutation p.S491L 0.13 deleterious(0.02) benign(0.271) TCGA-ZF-A9RC-01 7 30395343 30395343 G A ZNRF2 Splice_Site p.X189_splice 0.25 TCGA-ZF-A9RC-01 7 32914648 32914648 C T KBTBD2 Missense_Mutation p.D98N 0.29 deleterious(0.03) benign(0.081) TCGA-ZF-A9RC-01 7 33545228 33545228 C T BBS9 Silent p.L757L 0.10 TCGA-ZF-A9RC-01 7 36438905 36438905 G A ANLN Silent p.L130L 0.06 TCGA-ZF-A9RC-01 7 36489317 36489317 A T ANLN Missense_Mutation p.Q1041L 0.15 tolerated(0.12) benign(0.251) TCGA-ZF-A9RC-01 7 39612184 39612184 G A YAE1D1 Missense_Mutation p.R187K 0.10 tolerated(0.4) benign(0.11) TCGA-ZF-A9RC-01 7 4150355 4150355 G A SDK1 Missense_Mutation p.D1129N 0.29 deleterious(0.04) benign(0.075) TCGA-ZF-A9RC-01 7 42957400 42957400 G A PSMA2 Missense_Mutation p.H189Y 0.08 deleterious(0.03) probably_damaging(0.965) TCGA-ZF-A9RC-01 7 44079130 44079130 C T LINC00957 RNA 0.26 TCGA-ZF-A9RC-01 7 44080628 44080628 C T DBNL 5'Flank 0.09 TCGA-ZF-A9RC-01 7 44152334 44152334 G A AEBP1 Missense_Mutation p.E799K 0.14 deleterious(0.02) benign(0.352) TCGA-ZF-A9RC-01 7 44620713 44620713 C T TMED4 Silent p.Q171Q 0.32 TCGA-ZF-A9RC-01 7 44735681 44735681 G A OGDH Missense_Mutation p.E576K 0.29 tolerated(0.3) possibly_damaging(0.887) TCGA-ZF-A9RC-01 7 44804988 44804988 C A ZMIZ2 Silent p.P684P 0.26 TCGA-ZF-A9RC-01 7 47384560 47384560 G A TNS3 Missense_Mutation p.S843L 0.29 tolerated(0.22) benign(0.003) TCGA-ZF-A9RC-01 7 4856951 4856951 C T RADIL Silent p.L549L 0.12 TCGA-ZF-A9RC-01 7 50023080 50023080 T A ZPBP Missense_Mutation p.Q273H 0.43 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9RC-01 7 5427339 5427339 C A TNRC18 Missense_Mutation p.D706Y 0.14 probably_damaging(0.95) TCGA-ZF-A9RC-01 7 6048638 6048638 C T PMS2 Missense_Mutation p.E5K 0.21 tolerated_low_confidence(0.18) benign(0.159) TCGA-ZF-A9RC-01 7 72738485 72738485 C G TRIM50 Missense_Mutation p.E101Q 0.09 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 7 73634089 73634089 G A LAT2 Silent p.Q50Q 0.12 TCGA-ZF-A9RC-01 7 74148296 74148296 T G GTF2I Missense_Mutation p.L446V 0.16 tolerated(0.67) benign(0.002) TCGA-ZF-A9RC-01 7 75612892 75612892 G A POR Silent p.L295L 0.17 TCGA-ZF-A9RC-01 7 76033795 76033795 C T SRCRB4D 5'UTR 0.18 TCGA-ZF-A9RC-01 7 7625322 7625322 G A MIOS Silent p.K568K 0.17 TCGA-ZF-A9RC-01 7 8043583 8043583 G A GLCCI1 Missense_Mutation p.R168K 0.17 deleterious(0.05) possibly_damaging(0.87) TCGA-ZF-A9RC-01 7 82581309 82581309 A T PCLO Missense_Mutation p.I2987N 0.30 unknown(0) TCGA-ZF-A9RC-01 7 82583524 82583524 G A PCLO Missense_Mutation p.R2249W 0.29 unknown(0) TCGA-ZF-A9RC-01 7 82586125 82586125 G A PCLO Missense_Mutation p.P1382S 0.08 unknown(0) TCGA-ZF-A9RC-01 7 82785627 82785627 G C PCLO Silent p.L110L 0.24 TCGA-ZF-A9RC-01 7 86479856 86479856 T A GRM3 Silent p.S854S 0.08 TCGA-ZF-A9RC-01 7 87027883 87027883 G C CROT Missense_Mutation p.D616H 0.09 deleterious(0.01) probably_damaging(0.989) TCGA-ZF-A9RC-01 7 89854845 89854845 C T STEAP2 Missense_Mutation p.S150L 0.23 deleterious(0) probably_damaging(0.962) TCGA-ZF-A9RC-01 7 91690591 91690591 G A AKAP9 Silent p.V1873V 0.10 TCGA-ZF-A9RC-01 7 91690682 91690682 C T AKAP9 Missense_Mutation p.H1904Y 0.27 benign(0.234) TCGA-ZF-A9RC-01 7 92952988 92952988 C G CCDC132 Missense_Mutation p.Q641E 0.12 tolerated(0.07) benign(0.093) TCGA-ZF-A9RC-01 7 93112121 93112121 G T CALCR Intron 0.08 TCGA-ZF-A9RC-01 7 935027 935027 C T GET4 Missense_Mutation p.P318S 0.12 tolerated(0.37) benign(0.005) TCGA-ZF-A9RC-01 7 99091253 99091253 C G ZNF394 Missense_Mutation p.E529Q 0.16 tolerated(0.15) benign(0.008) TCGA-ZF-A9RC-01 7 99277529 99277529 C T CYP3A5 5'UTR 0.18 TCGA-ZF-A9RC-01 7 99798091 99798091 G A STAG3 Missense_Mutation p.E596K 0.21 deleterious(0) possibly_damaging(0.851) TCGA-ZF-A9RC-01 8 100887671 100887671 C T VPS13B Missense_Mutation p.S3949L 0.07 deleterious(0) benign(0.307) TCGA-ZF-A9RC-01 8 101146122 101146122 C T FBXO43 Missense_Mutation p.E679K 0.64 tolerated(0.98) benign(0.086) TCGA-ZF-A9RC-01 8 101270947 101270947 G C RNF19A Missense_Mutation p.S785C 0.50 deleterious_low_confidence(0.02) benign(0.145) TCGA-ZF-A9RC-01 8 101271100 101271100 G C RNF19A Missense_Mutation p.S734C 0.44 deleterious_low_confidence(0) benign(0.007) TCGA-ZF-A9RC-01 8 101271122 101271122 G C RNF19A Missense_Mutation p.H727D 0.48 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-ZF-A9RC-01 8 103284977 103284977 G A UBR5 Silent p.L2251L 0.56 TCGA-ZF-A9RC-01 8 110587797 110587797 C T SYBU Missense_Mutation p.E444K 0.10 tolerated(0.17) benign(0.149) TCGA-ZF-A9RC-01 8 110984849 110984849 C A KCNV1 Missense_Mutation p.R210L 0.35 deleterious(0) possibly_damaging(0.59) TCGA-ZF-A9RC-01 8 116617054 116617054 G A TRPS1 Missense_Mutation p.S381F 0.14 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-ZF-A9RC-01 8 11703298 11703298 C G CTSB Missense_Mutation p.G265A 0.25 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9RC-01 8 118533247 118533247 C T MED30 Silent p.I44I 0.13 TCGA-ZF-A9RC-01 8 124525576 124525576 C T FBXO32 Silent p.Q171Q 0.15 TCGA-ZF-A9RC-01 8 125025760 125025760 C T FER1L6 Silent p.I637I 0.10 TCGA-ZF-A9RC-01 8 134042141 134042141 G A TG Missense_Mutation p.R2371Q 0.30 deleterious(0.02) benign(0.015) TCGA-ZF-A9RC-01 8 144358776 144358776 C T GLI4 Silent p.I311I 0.17 TCGA-ZF-A9RC-01 8 144643266 144643266 C G GSDMD Missense_Mutation p.S225C 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-ZF-A9RC-01 8 144733242 144733242 G C ZNF623 Missense_Mutation p.E400D 0.14 deleterious(0.02) possibly_damaging(0.768) TCGA-ZF-A9RC-01 8 145060559 145060559 G A PARP10 5'UTR 0.21 TCGA-ZF-A9RC-01 8 145138363 145138363 C T GPAA1 Missense_Mutation p.S109F 0.06 deleterious(0.03) benign(0.166) TCGA-ZF-A9RC-01 8 145193701 145193701 G A FAM203A Missense_Mutation p.E260K 0.15 deleterious(0) possibly_damaging(0.835) TCGA-ZF-A9RC-01 8 145254055 145254055 C T MROH1 Silent p.L327L 0.25 TCGA-ZF-A9RC-01 8 145584687 145584688 - G SLC52A2 3'UTR 0.08 TCGA-ZF-A9RC-01 8 145693284 145693284 G A KIFC2 Missense_Mutation p.E242K 0.30 tolerated(0.07) probably_damaging(0.993) TCGA-ZF-A9RC-01 8 145697757 145697757 C T KIFC2 Missense_Mutation p.P541S 0.25 tolerated(0.09) benign(0.11) TCGA-ZF-A9RC-01 8 145999073 145999073 A G ZNF34 Missense_Mutation p.C421R 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 8 17478585 17478603 CAGTTGACTCTGGTCAACT - PDGFRL Frame_Shift_Del p.Q127Pfs*54 0.19 TCGA-ZF-A9RC-01 8 17486204 17486204 C G PDGFRL Silent p.S238S 0.16 TCGA-ZF-A9RC-01 8 20036725 20036725 A G SLC18A1 Missense_Mutation p.L132S 0.29 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 8 2040330 2040330 A G MYOM2 Missense_Mutation p.K662R 0.12 deleterious(0.04) benign(0.262) TCGA-ZF-A9RC-01 8 23711974 23711974 C T STC1 Silent p.A21A 0.10 TCGA-ZF-A9RC-01 8 24199172 24199172 C T ADAM28 Missense_Mutation p.R578W 0.16 deleterious(0.04) possibly_damaging(0.873) TCGA-ZF-A9RC-01 8 26238287 26238287 C T BNIP3L 5'Flank 0.16 TCGA-ZF-A9RC-01 8 28876350 28876350 C G HMBOX1 Silent p.V257V 0.24 TCGA-ZF-A9RC-01 8 30999044 30999044 G A WRN Silent p.L1022L 0.18 TCGA-ZF-A9RC-01 8 38109768 38109768 T G DDHD2 Missense_Mutation p.F527C 0.16 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9RC-01 8 38279342 38279342 G A FGFR1 Missense_Mutation p.H383Y 0.13 deleterious(0) possibly_damaging(0.478) TCGA-ZF-A9RC-01 8 38646286 38646286 G A TACC1 Missense_Mutation p.E76K 0.12 deleterious(0.02) benign(0.423) TCGA-ZF-A9RC-01 8 41399354 41399354 G C GINS4 Missense_Mutation p.V171L 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-ZF-A9RC-01 8 42129600 42129600 G A IKBKB Splice_Site 0.42 TCGA-ZF-A9RC-01 8 48613050 48613050 G A SPIDR Missense_Mutation p.E591K 0.16 deleterious(0.05) possibly_damaging(0.736) TCGA-ZF-A9RC-01 8 48739356 48739356 C T PRKDC Missense_Mutation p.A2881T 0.27 possibly_damaging(0.511) TCGA-ZF-A9RC-01 8 49831524 49831524 G A SNAI2 Missense_Mutation p.H217Y 0.09 deleterious(0.03) benign(0.444) TCGA-ZF-A9RC-01 8 56698426 56698426 G A TGS1 Silent p.R105R 0.66 TCGA-ZF-A9RC-01 8 56986287 56986287 G A RPS20 Silent p.L48L 0.15 TCGA-ZF-A9RC-01 8 61761113 61761113 A G CHD7 Silent p.Q1750Q 0.38 TCGA-ZF-A9RC-01 8 62593548 62593548 C T ASPH Missense_Mutation p.D101N 0.17 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-ZF-A9RC-01 8 6914080 6914080 G C DEFA5 Missense_Mutation p.A47G 0.06 tolerated(0.27) benign(0.315) TCGA-ZF-A9RC-01 8 72987763 72987763 G A TRPA1 5'UTR 0.40 TCGA-ZF-A9RC-01 8 75272543 75272543 G A GDAP1 Missense_Mutation p.R161H 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9RC-01 8 80523428 80523428 A T STMN2 5'UTR 0.28 TCGA-ZF-A9RC-01 8 81599565 81599565 C T ZNF704 Missense_Mutation p.D152N 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RC-01 8 86044083 86044083 G A LRRCC1 Missense_Mutation p.E619K 0.24 tolerated(0.08) benign(0.211) TCGA-ZF-A9RC-01 8 95658507 95658507 G A ESRP1 Missense_Mutation p.E163K 0.21 tolerated(0.21) benign(0.002) TCGA-ZF-A9RC-01 8 97620618 97620618 T C SDC2 Missense_Mutation p.M121T 0.10 tolerated(0.61) benign(0.001) TCGA-ZF-A9RC-01 8 98078389 98078389 C A CPQ Missense_Mutation p.S402R 0.07 tolerated(0.27) benign(0.009) TCGA-ZF-A9RC-01 9 100616566 100616566 G A FOXE1 Missense_Mutation p.G124S 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 9 102744865 102744865 G A ERP44 3'UTR 0.16 TCGA-ZF-A9RC-01 9 103338886 103338886 G A TMEFF1 3'UTR 0.04 TCGA-ZF-A9RC-01 9 111665213 111665213 G T IKBKAP Missense_Mutation p.S587Y 0.16 deleterious(0.02) possibly_damaging(0.863) TCGA-ZF-A9RC-01 9 114521579 114521579 G A C9orf84 Intron 0.12 TCGA-ZF-A9RC-01 9 114691933 114691933 T C UGCG Missense_Mutation p.F238L 0.18 deleterious(0.03) probably_damaging(0.919) TCGA-ZF-A9RC-01 9 116858471 116858471 G A KIF12 Missense_Mutation p.S114F 0.13 tolerated(0.06) benign(0.416) TCGA-ZF-A9RC-01 9 116859977 116859977 C G KIF12 Missense_Mutation p.Q2H 0.43 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 9 117186750 117186750 T A DFNB31 Missense_Mutation p.E427V 0.33 deleterious(0) possibly_damaging(0.864) TCGA-ZF-A9RC-01 9 118969806 118969806 T C PAPPA Missense_Mutation p.F517S 0.24 deleterious(0) possibly_damaging(0.637) TCGA-ZF-A9RC-01 9 123928423 123928423 G A CNTRL Missense_Mutation p.A1874T 0.19 benign(0.001) TCGA-ZF-A9RC-01 9 124921923 124921923 C T NDUFA8 Missense_Mutation p.E12K 0.13 deleterious(0.02) benign(0.007) TCGA-ZF-A9RC-01 9 130569504 130569504 C T FPGS Missense_Mutation p.S173F 0.10 deleterious(0) possibly_damaging(0.48) TCGA-ZF-A9RC-01 9 131256926 131256926 C T ODF2 Silent p.I630I 0.11 TCGA-ZF-A9RC-01 9 131696081 131696081 G C PHYHD1 Missense_Mutation p.L71F 0.10 tolerated(0.05) probably_damaging(0.991) TCGA-ZF-A9RC-01 9 131708232 131708232 C T DOLK Missense_Mutation p.D451N 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RC-01 9 132382097 132382097 G A C9orf50 Missense_Mutation p.P174L 0.26 tolerated(0.06) probably_damaging(0.96) TCGA-ZF-A9RC-01 9 134053773 134053773 C T NUP214 Missense_Mutation p.P1132L 0.29 benign(0.002) TCGA-ZF-A9RC-01 9 134504030 134504030 C T RAPGEF1 Missense_Mutation p.R309K 0.27 tolerated(0.05) probably_damaging(0.931) TCGA-ZF-A9RC-01 9 135139639 135139639 C T SETX Missense_Mutation p.R2674K 0.17 deleterious_low_confidence(0.01) benign(0.437) TCGA-ZF-A9RC-01 9 135145065 135145065 C T SETX Silent p.L2408L 0.09 TCGA-ZF-A9RC-01 9 135946414 135946414 G A CEL Missense_Mutation p.E512K 0.08 tolerated(0.55) benign(0.082) TCGA-ZF-A9RC-01 9 136341396 136341396 G A SLC2A6 Silent p.L175L 0.13 TCGA-ZF-A9RC-01 9 137809738 137809738 G A FCN1 5'UTR 0.21 TCGA-ZF-A9RC-01 9 138376625 138376625 A G PPP1R26 Missense_Mutation p.H90R 0.17 tolerated(0.92) benign(0.031) TCGA-ZF-A9RC-01 9 139620419 139620419 G A FAM69B 3'Flank 0.42 TCGA-ZF-A9RC-01 9 139887404 139887404 G A C9orf142 Missense_Mutation p.E70K 0.07 deleterious(0) possibly_damaging(0.906) TCGA-ZF-A9RC-01 9 140330593 140330593 C T ENTPD8 Missense_Mutation p.E308K 0.22 tolerated(0.2) benign(0.115) TCGA-ZF-A9RC-01 9 19332106 19332106 C G DENND4C Missense_Mutation p.P795R 0.20 deleterious(0.01) benign(0.394) TCGA-ZF-A9RC-01 9 19346572 19346572 G A DENND4C Missense_Mutation p.E1220K 0.13 tolerated(0.09) possibly_damaging(0.702) TCGA-ZF-A9RC-01 9 21350638 21350638 C T IFNA6 Silent p.V83V 0.33 TCGA-ZF-A9RC-01 9 33036681 33036681 C T DNAJA1 Missense_Mutation p.H290Y 0.28 tolerated(0.74) benign(0.052) TCGA-ZF-A9RC-01 9 33113820 33113820 C A B4GALT1 Missense_Mutation p.R339L 0.19 deleterious(0.01) probably_damaging(0.911) TCGA-ZF-A9RC-01 9 3346697 3346697 C T RFX3 Missense_Mutation p.G62E 0.08 tolerated(0.06) benign(0.049) TCGA-ZF-A9RC-01 9 34637058 34637058 G A SIGMAR1 Silent p.T127T 0.23 TCGA-ZF-A9RC-01 9 35732652 35732652 G A CREB3 5'UTR 0.17 TCGA-ZF-A9RC-01 9 35826102 35826102 G T FAM221B Missense_Mutation p.H19Q 0.34 tolerated(0.13) benign(0.21) TCGA-ZF-A9RC-01 9 35906475 35906475 G A HRCT1 Missense_Mutation p.R64Q 0.22 tolerated_low_confidence(0.07) benign(0.007) TCGA-ZF-A9RC-01 9 36671006 36671006 T C MELK Missense_Mutation p.V506A 0.27 deleterious(0.02) benign(0.41) TCGA-ZF-A9RC-01 9 36671008 36671008 G A MELK Missense_Mutation p.E507K 0.27 deleterious(0.01) possibly_damaging(0.721) TCGA-ZF-A9RC-01 9 37429803 37429803 G C GRHPR Missense_Mutation p.E190Q 0.10 tolerated(0.49) benign(0.002) TCGA-ZF-A9RC-01 9 3828157 3828157 G A GLIS3 3'UTR 0.60 TCGA-ZF-A9RC-01 9 6413598 6413598 C T UHRF2 Silent p.F36F 0.32 TCGA-ZF-A9RC-01 9 75315549 75315549 G C TMC1 Missense_Mutation p.E118Q 0.11 tolerated(0.15) benign(0.004) TCGA-ZF-A9RC-01 9 79267423 79267423 C G PRUNE2 Missense_Mutation p.D2845H 0.16 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 9 8484233 8484233 G A PTPRD Missense_Mutation p.T1100M 0.11 deleterious(0.02) possibly_damaging(0.776) TCGA-ZF-A9RC-01 9 86584257 86584257 C T HNRNPK 3'UTR 0.07 TCGA-ZF-A9RC-01 9 88940389 88940389 G T ZCCHC6 Missense_Mutation p.P550Q 0.26 deleterious(0.02) probably_damaging(0.983) TCGA-ZF-A9RC-01 9 90502632 90502632 C T SPATA31E1 Missense_Mutation p.S1077L 0.20 tolerated(0.75) benign(0.32) TCGA-ZF-A9RC-01 X 100515619 100515619 G A DRP2 3'UTR 0.27 TCGA-ZF-A9RC-01 X 100603679 100603679 G A TIMM8A 5'UTR 0.14 TCGA-ZF-A9RC-01 X 100912204 100912204 C T ARMCX2 Missense_Mutation p.G124E 0.34 tolerated_low_confidence(0.24) benign(0.012) TCGA-ZF-A9RC-01 X 101910965 101910965 C G GPRASP1 Missense_Mutation p.F708L 0.33 tolerated(0.71) benign(0.01) TCGA-ZF-A9RC-01 X 102632354 102632354 G A NGFRAP1 Intron 0.31 TCGA-ZF-A9RC-01 X 106418347 106418347 C T NUP62CL Silent p.L10L 0.25 TCGA-ZF-A9RC-01 X 111019635 111019635 G A TRPC5 Missense_Mutation p.S943L 0.42 deleterious_low_confidence(0.01) benign(0.017) TCGA-ZF-A9RC-01 X 117788639 117788639 G A DOCK11 Missense_Mutation p.M1590I 0.40 deleterious(0) probably_damaging(0.985) TCGA-ZF-A9RC-01 X 131573563 131573563 C T MBNL3 Missense_Mutation p.G26E 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RC-01 X 133941727 133941727 C T FAM122C Silent p.I33I 0.36 TCGA-ZF-A9RC-01 X 138619285 138619285 T C F9 Missense_Mutation p.C69R 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-A9RC-01 X 142716530 142716530 G A SLITRK4 Missense_Mutation p.H799Y 0.12 deleterious(0.03) benign(0.094) TCGA-ZF-A9RC-01 X 1508270 1508270 G A SLC25A6 Silent p.F154F 0.08 TCGA-ZF-A9RC-01 X 151366256 151366256 T C GABRA3 Silent p.G260G 0.15 TCGA-ZF-A9RC-01 X 153049658 153049658 G A SRPK3 Silent p.L379L 0.16 TCGA-ZF-A9RC-01 X 1540607 1540607 C T ASMTL Missense_Mutation p.E397K 0.35 deleterious(0.03) benign(0.417) TCGA-ZF-A9RC-01 X 1540609 1540609 C T ASMTL Missense_Mutation p.R396Q 0.35 tolerated(0.09) possibly_damaging(0.49) TCGA-ZF-A9RC-01 X 15509421 15509421 G T PIR 5'UTR 0.24 TCGA-ZF-A9RC-01 X 16846367 16846367 C G TXLNG Missense_Mutation p.R217G 0.11 deleterious(0) probably_damaging(0.924) TCGA-ZF-A9RC-01 X 16857974 16857974 G A TXLNG Missense_Mutation p.E395K 0.11 deleterious(0) probably_damaging(0.982) TCGA-ZF-A9RC-01 X 18802022 18802022 T C PPEF1 Silent p.H256H 0.39 TCGA-ZF-A9RC-01 X 21627229 21627229 G A CNKSR2 Missense_Mutation p.R729Q 0.17 deleterious(0.03) possibly_damaging(0.895) TCGA-ZF-A9RC-01 X 23411413 23411413 A G PTCHD1 Missense_Mutation p.N593S 0.41 tolerated(0.31) benign(0.191) TCGA-ZF-A9RC-01 X 24091329 24091329 C T EIF2S3 Missense_Mutation p.T435I 0.33 deleterious(0) possibly_damaging(0.457) TCGA-ZF-A9RC-01 X 48775887 48775887 G A PIM2 Nonsense_Mutation p.R33* 0.33 TCGA-ZF-A9RC-01 X 49851280 49851280 C G CLCN5 Missense_Mutation p.T437S 0.20 deleterious(0.03) possibly_damaging(0.547) TCGA-ZF-A9RC-01 X 49957408 49957408 C T AKAP4 Silent p.E652E 0.42 TCGA-ZF-A9RC-01 X 50350866 50350866 G A SHROOM4 Silent p.L1092L 0.24 TCGA-ZF-A9RC-01 X 50377209 50377209 C T SHROOM4 Missense_Mutation p.E622K 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9RC-01 X 53223918 53223918 G A KDM5C Silent p.I1147I 0.24 TCGA-ZF-A9RC-01 X 56590814 56590814 C G UBQLN2 Missense_Mutation p.Q170E 0.23 deleterious(0.02) benign(0.041) TCGA-ZF-A9RC-01 X 64196276 64196276 C T ZC4H2 5'UTR 0.30 TCGA-ZF-A9RC-01 X 66941720 66941720 G C AR Missense_Mutation p.M788I 0.25 deleterious(0.02) benign(0.387) TCGA-ZF-A9RC-01 X 69719873 69719873 C T DLG3 Nonsense_Mutation p.Q707* 0.40 TCGA-ZF-A9RC-01 X 70342961 70342961 A G MED12 Missense_Mutation p.D501G 0.46 possibly_damaging(0.9) TCGA-ZF-A9RC-01 X 70443614 70443614 C T GJB1 Silent p.A19A 0.28 TCGA-ZF-A9RC-01 X 71350616 71350616 G A RGAG4 Nonsense_Mutation p.Q259* 0.18 TCGA-ZF-A9RC-01 X 71549798 71549798 C G HDAC8 3'UTR 0.21 TCGA-ZF-A9RC-01 X 84534349 84534349 A C POF1B 3'UTR 0.26 TCGA-ZF-A9RC-01 Y 14837150 14837150 G A USP9Y Missense_Mutation p.E144K 0.29 tolerated(0.1) benign(0.26) TCGA-ZF-A9RC-01 Y 14838584 14838584 T A USP9Y Missense_Mutation p.L172Q 0.53 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RC-01 Y 3447348 3447348 G A TGIF2LY Silent p.A21A 0.28 TCGA-ZF-A9RD-01 10 101565153 101565153 G C ABCC2 Missense_Mutation p.K493N 0.17 deleterious(0.05) benign(0.077) TCGA-ZF-A9RD-01 10 103899698 103899698 G T PPRC1 Missense_Mutation p.R478M 0.08 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ZF-A9RD-01 10 127730664 127730664 A C ADAM12 Intron 0.20 TCGA-ZF-A9RD-01 10 44052105 44052105 T G ZNF239 3'UTR 0.16 TCGA-ZF-A9RD-01 10 75609037 75609037 G A CAMK2G Silent p.I132I 0.41 TCGA-ZF-A9RD-01 10 87898678 87898678 G A GRID1 Silent p.L208L 0.28 TCGA-ZF-A9RD-01 10 93390097 93390097 C G PPP1R3C Missense_Mutation p.E181Q 0.13 deleterious(0.04) benign(0.23) TCGA-ZF-A9RD-01 11 12345547 12345547 G A MICALCL Missense_Mutation p.R522K 0.25 deleterious(0.04) possibly_damaging(0.847) TCGA-ZF-A9RD-01 11 28112259 28112259 C T KIF18A Missense_Mutation p.E202K 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RD-01 11 30034333 30034333 G A KCNA4 5'UTR 0.42 TCGA-ZF-A9RD-01 11 44071666 44071666 G A ACCSL Missense_Mutation p.E187K 0.16 tolerated(0.47) benign(0.132) TCGA-ZF-A9RD-01 11 62397071 62397071 G A GANAB Missense_Mutation p.S630F 0.16 deleterious(0) probably_damaging(0.983) TCGA-ZF-A9RD-01 11 62397082 62397082 G C GANAB Missense_Mutation p.F626L 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-A9RD-01 11 64129188 64129188 C T RPS6KA4 Silent p.G242G 0.26 TCGA-ZF-A9RD-01 11 6662560 6662560 G A DCHS1 Silent p.D95D 0.41 TCGA-ZF-A9RD-01 11 67192061 67192061 C G CARNS1 Missense_Mutation p.H948D 0.14 tolerated(0.15) benign(0.175) TCGA-ZF-A9RD-01 11 727012 727012 G A EPS8L2 3'UTR 0.46 TCGA-ZF-A9RD-01 11 94353178 94353178 G A PIWIL4 Silent p.L770L 0.43 TCGA-ZF-A9RD-01 12 112915528 112915528 C G PTPN11 Missense_Mutation p.I309M 0.27 deleterious(0.03) possibly_damaging(0.603) TCGA-ZF-A9RD-01 12 113314631 113314631 G A RPH3A Silent p.E377E 0.20 TCGA-ZF-A9RD-01 12 118627629 118627629 T C TAOK3 Missense_Mutation p.I438V 0.18 tolerated(0.08) benign(0.117) TCGA-ZF-A9RD-01 12 31236983 31236983 G A DDX11 Silent p.V127V 0.15 TCGA-ZF-A9RD-01 12 31236988 31236988 G A DDX11 Missense_Mutation p.R129Q 0.15 tolerated(0.13) benign(0.443) TCGA-ZF-A9RD-01 12 33579079 33579079 G C SYT10 Nonsense_Mutation p.S168* 0.17 TCGA-ZF-A9RD-01 12 39734071 39734071 G A KIF21A Nonsense_Mutation p.Q736* 0.05 TCGA-ZF-A9RD-01 12 49176771 49176771 C G ADCY6 Missense_Mutation p.Q149H 0.34 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RD-01 12 49176871 49176871 C T ADCY6 Missense_Mutation p.R116Q 0.34 tolerated(0.6) benign(0.001) TCGA-ZF-A9RD-01 12 49177002 49177002 C T ADCY6 Silent p.R72R 0.39 TCGA-ZF-A9RD-01 12 53434031 53434031 C G EIF4B 3'UTR 0.46 TCGA-ZF-A9RD-01 12 56638458 56638458 C G ANKRD52 Missense_Mutation p.E900D 0.16 tolerated(0.35) benign(0.038) TCGA-ZF-A9RD-01 12 7548851 7548851 G A CD163L1 Silent p.I630I 0.10 TCGA-ZF-A9RD-01 12 8375060 8375060 G C FAM90A1 Silent p.L251L 0.40 TCGA-ZF-A9RD-01 13 109459059 109459059 G C MYO16 Missense_Mutation p.E236D 0.07 tolerated(0.21) benign(0.075) TCGA-ZF-A9RD-01 13 114009698 114009698 A T GRTP1 Missense_Mutation p.Y94N 0.24 deleterious(0.03) possibly_damaging(0.77) TCGA-ZF-A9RD-01 13 21557868 21557868 C G LATS2 Missense_Mutation p.K659N 0.24 deleterious(0) possibly_damaging(0.894) TCGA-ZF-A9RD-01 13 52603963 52603963 G C UTP14C Missense_Mutation p.E341D 0.26 tolerated(0.29) benign(0.03) TCGA-ZF-A9RD-01 13 52603988 52603988 G A UTP14C Missense_Mutation p.E350K 0.27 tolerated(0.2) benign(0.021) TCGA-ZF-A9RD-01 13 52604156 52604156 G T UTP14C Nonsense_Mutation p.E406* 0.23 TCGA-ZF-A9RD-01 13 52604165 52604165 G C UTP14C Missense_Mutation p.E409Q 0.25 tolerated(0.06) possibly_damaging(0.903) TCGA-ZF-A9RD-01 13 53024700 53024700 G A VPS36 Silent p.L10L 0.19 TCGA-ZF-A9RD-01 13 53420310 53420310 G A PCDH8 Silent p.I754I 0.12 TCGA-ZF-A9RD-01 14 102807866 102807866 C T ZNF839 Missense_Mutation p.P712S 0.23 tolerated(0.07) possibly_damaging(0.787) TCGA-ZF-A9RD-01 14 106208379 106208379 G A IGHG1 Missense_Mutation p.P174L 0.21 tolerated(0.08) benign(0.007) TCGA-ZF-A9RD-01 14 106208723 106208723 C G IGHG1 Splice_Site p.X99_splice 0.33 TCGA-ZF-A9RD-01 14 50267154 50267154 G C NEMF Missense_Mutation p.H786D 0.27 deleterious(0.01) possibly_damaging(0.791) TCGA-ZF-A9RD-01 14 50267267 50267267 G C NEMF Missense_Mutation p.S748C 0.27 deleterious(0.04) possibly_damaging(0.827) TCGA-ZF-A9RD-01 14 55818155 55818155 T C FBXO34 Silent p.D349D 0.35 TCGA-ZF-A9RD-01 14 74376124 74376124 G A ZNF410 Missense_Mutation p.V349I 0.37 tolerated(0.13) benign(0.247) TCGA-ZF-A9RD-01 14 75283755 75283755 A C YLPM1 Missense_Mutation p.D1936A 0.38 probably_damaging(0.937) TCGA-ZF-A9RD-01 14 91161866 91161866 C T TTC7B Missense_Mutation p.R252K 0.40 tolerated(0.5) benign(0.323) TCGA-ZF-A9RD-01 14 94545986 94545986 C T DDX24 Missense_Mutation p.D35N 0.20 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RD-01 14 94756574 94756574 C T SERPINA10 Silent p.P119P 0.25 TCGA-ZF-A9RD-01 15 20710679 20710679 G A HERC2P3 RNA 0.16 TCGA-ZF-A9RD-01 15 39893040 39893040 C T FSIP1 3'UTR 0.15 TCGA-ZF-A9RD-01 15 44876219 44876219 C G SPG11 Missense_Mutation p.D1887H 0.33 deleterious(0) probably_damaging(0.979) TCGA-ZF-A9RD-01 15 48818437 48818437 C T FBN1 Missense_Mutation p.S293N 0.15 benign(0.159) TCGA-ZF-A9RD-01 15 66633668 66633668 C G TIPIN Missense_Mutation p.D168H 0.31 deleterious(0.03) possibly_damaging(0.832) TCGA-ZF-A9RD-01 15 67938757 67938757 G T MAP2K5 Missense_Mutation p.G229V 0.15 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RD-01 15 75042310 75042310 G T CYP1A2 Missense_Mutation p.Q77H 0.26 deleterious(0.01) probably_damaging(0.923) TCGA-ZF-A9RD-01 15 75042595 75042595 G C CYP1A2 Silent p.L172L 0.32 TCGA-ZF-A9RD-01 15 80191373 80191373 T G ST20 Missense_Mutation p.E47A 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-ZF-A9RD-01 15 83334220 83334220 G A AP3B2 Missense_Mutation p.R654C 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 16 20871598 20871598 T C DCUN1D3 Silent p.Q175Q 0.08 TCGA-ZF-A9RD-01 16 20975977 20975977 G A DNAH3 Missense_Mutation p.R3077C 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-A9RD-01 16 21262007 21262007 C G ANKS4B Missense_Mutation p.L374V 0.43 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 16 24583000 24583000 G C RBBP6 Missense_Mutation p.R1538T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-ZF-A9RD-01 16 58571038 58571038 G C CNOT1 Missense_Mutation p.S1834C 0.35 deleterious(0) possibly_damaging(0.894) TCGA-ZF-A9RD-01 16 67400955 67400955 C T LRRC36 Nonsense_Mutation p.R264* 0.22 TCGA-ZF-A9RD-01 16 67943151 67943151 C T PSKH1 Missense_Mutation p.R167W 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RD-01 16 7759106 7759106 A C RBFOX1 Silent p.P369P 0.08 TCGA-ZF-A9RD-01 16 84050202 84050202 C T SLC38A8 Missense_Mutation p.A362T 0.24 deleterious(0.03) probably_damaging(0.956) TCGA-ZF-A9RD-01 16 88719778 88719778 G A MVD Missense_Mutation p.S351L 0.22 tolerated(0.13) benign(0.105) TCGA-ZF-A9RD-01 17 1538399 1538399 G A SCARF1 Nonsense_Mutation p.Q716* 0.50 TCGA-ZF-A9RD-01 17 1538603 1538603 G C SCARF1 Missense_Mutation p.P648A 0.43 tolerated(0.16) benign(0.016) TCGA-ZF-A9RD-01 17 18219385 18219385 C T SMCR8 Silent p.I94I 0.14 TCGA-ZF-A9RD-01 17 18882043 18882043 G T FAM83G Silent p.L312L 0.49 TCGA-ZF-A9RD-01 17 29226579 29226579 G A TEFM Silent p.L231L 0.06 TCGA-ZF-A9RD-01 17 30228700 30228700 G C UTP6 5'UTR 0.15 TCGA-ZF-A9RD-01 17 31350878 31350878 C G ASIC2 Splice_Site p.X450_splice 0.38 TCGA-ZF-A9RD-01 17 37618547 37618547 G T CDK12 Missense_Mutation p.D75Y 0.05 unknown(0) TCGA-ZF-A9RD-01 17 3953084 3953084 G A ZZEF1 Missense_Mutation p.P1978L 0.49 deleterious(0.01) benign(0.016) TCGA-ZF-A9RD-01 17 41168126 41168126 C G VAT1 Missense_Mutation p.K378N 0.40 tolerated(0.11) benign(0.052) TCGA-ZF-A9RD-01 17 45056104 45056104 G A RPRML Silent p.N90N 0.18 TCGA-ZF-A9RD-01 17 46214586 46214586 G C SKAP1 Intron 0.30 TCGA-ZF-A9RD-01 17 72436480 72436480 C T GPRC5C Nonsense_Mutation p.Q234* 0.53 TCGA-ZF-A9RD-01 17 73221213 73221213 C T NUP85 Silent p.L205L 0.42 TCGA-ZF-A9RD-01 17 73565329 73565329 G A LLGL2 Missense_Mutation p.D502N 0.38 deleterious(0) probably_damaging(1) TCGA-ZF-A9RD-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.57 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 17 76440786 76440786 C T DNAH17 Missense_Mutation p.E3796K 0.34 probably_damaging(0.999) TCGA-ZF-A9RD-01 17 76481699 76481699 C G DNAH17 Silent p.L2458L 0.21 TCGA-ZF-A9RD-01 18 3596881 3596881 A T DLGAP1 Intron 0.26 TCGA-ZF-A9RD-01 18 5397353 5397353 C T EPB41L3 Missense_Mutation p.E849K 0.11 tolerated_low_confidence(0.25) benign(0.003) TCGA-ZF-A9RD-01 18 67673620 67673620 C T RTTN Silent p.Q2174Q 0.41 TCGA-ZF-A9RD-01 19 10450324 10450324 G T ICAM3 5'UTR 0.27 TCGA-ZF-A9RD-01 19 1295653 1295653 G A EFNA2 Missense_Mutation p.E84K 0.23 tolerated(0.06) benign(0.319) TCGA-ZF-A9RD-01 19 14846947 14846947 G CA EMR2 3'UTR 0.28 TCGA-ZF-A9RD-01 19 36018914 36018914 G C SBSN Silent p.L90L 0.35 TCGA-ZF-A9RD-01 19 36139804 36139804 C A COX6B1 Intron 0.21 TCGA-ZF-A9RD-01 19 44635930 44635930 C T ZNF225 Missense_Mutation p.S388L 0.17 tolerated(0.66) benign(0.013) TCGA-ZF-A9RD-01 19 45285711 45285711 C G CBLC Missense_Mutation p.Q248E 0.33 tolerated(0.09) benign(0.243) TCGA-ZF-A9RD-01 19 46190868 46190868 G A SNRPD2 Silent p.F100F 0.17 TCGA-ZF-A9RD-01 19 46191731 46191731 G C SNRPD2 Silent p.L32L 0.20 TCGA-ZF-A9RD-01 19 47725002 47725002 G C BBC3 Missense_Mutation p.P248A 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-ZF-A9RD-01 19 52469017 52469017 C T ZNF350 Missense_Mutation p.G230E 0.16 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RD-01 19 54445440 54445440 C T CACNG7 Missense_Mutation p.R241W 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZF-A9RD-01 19 56156236 56156236 C G ZNF581 Missense_Mutation p.S100C 0.10 deleterious(0.02) benign(0.414) TCGA-ZF-A9RD-01 19 56935499 56935499 C T ZNF583 Missense_Mutation p.P491L 0.21 deleterious(0) probably_damaging(1) TCGA-ZF-A9RD-01 19 6697705 6697705 G A C3 Silent p.I847I 0.20 TCGA-ZF-A9RD-01 19 847847 847847 G C PRTN3 Missense_Mutation p.D217H 0.36 tolerated(0.1) possibly_damaging(0.725) TCGA-ZF-A9RD-01 19 8974089 8974089 C G MUC16 Missense_Mutation p.Q14194H 0.22 probably_damaging(0.994) TCGA-ZF-A9RD-01 1 114454864 114454864 G C DCLRE1B 3'UTR 0.36 TCGA-ZF-A9RD-01 1 12302617 12302617 G C VPS13D Missense_Mutation p.E49Q 0.09 probably_damaging(0.969) TCGA-ZF-A9RD-01 1 12557613 12557613 C A VPS13D Missense_Mutation p.P4241H 0.08 probably_damaging(0.996) TCGA-ZF-A9RD-01 1 152671499 152671499 C G LCE2A Missense_Mutation p.S41C 0.31 tolerated_low_confidence(0.13) unknown(0) TCGA-ZF-A9RD-01 1 157545345 157545345 C T FCRL4 Missense_Mutation p.G506E 0.23 tolerated(0.1) possibly_damaging(0.888) TCGA-ZF-A9RD-01 1 169565266 169565266 G A SELP Silent p.T666T 0.29 TCGA-ZF-A9RD-01 1 182551220 182551220 C T RNASEL Silent p.L580L 0.25 TCGA-ZF-A9RD-01 1 198698263 198698263 C T PTPRC Intron 0.21 TCGA-ZF-A9RD-01 1 200017650 200017650 G C NR5A2 Missense_Mutation p.E272Q 0.40 tolerated(0.1) benign(0.128) TCGA-ZF-A9RD-01 1 202698960 202698960 C A KDM5B Nonsense_Mutation p.E1458* 0.28 TCGA-ZF-A9RD-01 1 220928421 220928421 G A MARC2 Silent p.L135L 0.13 TCGA-ZF-A9RD-01 1 224475612 224475612 C G NVL Silent p.L553L 0.26 TCGA-ZF-A9RD-01 1 224619465 224619465 G A WDR26 Silent p.L147L 0.21 TCGA-ZF-A9RD-01 1 228491470 228491470 C T OBSCN Silent p.P4611P 0.25 TCGA-ZF-A9RD-01 1 23689318 23689318 C T ZNF436 Missense_Mutation p.R186K 0.17 tolerated(0.05) possibly_damaging(0.786) TCGA-ZF-A9RD-01 1 237947202 237947202 G A RYR2 Missense_Mutation p.E4064K 0.32 benign(0.146) TCGA-ZF-A9RD-01 1 241797911 241797911 G A CHML Silent p.P386P 0.14 TCGA-ZF-A9RD-01 1 32620298 32620298 C G KPNA6 Silent p.L38L 0.26 TCGA-ZF-A9RD-01 1 32793253 32793253 A C HDAC1 Missense_Mutation p.Y204S 0.12 deleterious(0.01) benign(0.328) TCGA-ZF-A9RD-01 1 43273169 43273169 G T CCDC23 Silent p.I39I 0.15 TCGA-ZF-A9RD-01 1 52962747 52962747 C T ZCCHC11 Missense_Mutation p.D370N 0.14 tolerated(0.35) benign(0.007) TCGA-ZF-A9RD-01 1 54387340 54387340 G A HSPB11 Missense_Mutation p.S140L 0.21 tolerated_low_confidence(0.09) benign(0.006) TCGA-ZF-A9RD-01 1 8025425 8025425 A G PARK7 Silent p.V44V 0.24 TCGA-ZF-A9RD-01 20 33834786 33834786 G A MMP24 Silent p.T130T 0.23 TCGA-ZF-A9RD-01 20 40113086 40113086 G A CHD6 Silent p.F721F 0.16 TCGA-ZF-A9RD-01 20 48522461 48522461 G A SPATA2 Missense_Mutation p.H420Y 0.23 tolerated(0.44) benign(0.26) TCGA-ZF-A9RD-01 20 52193765 52193765 G C ZNF217 Missense_Mutation p.S513C 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 20 57767094 57767094 G A ZNF831 Silent p.E340E 0.14 TCGA-ZF-A9RD-01 21 37665633 37665633 G C DOPEY2 Missense_Mutation p.D2221H 0.36 deleterious(0.05) benign(0.013) TCGA-ZF-A9RD-01 21 45507591 45507591 G A TRAPPC10 Missense_Mutation p.E851K 0.33 deleterious(0.02) benign(0.027) TCGA-ZF-A9RD-01 22 20104414 20104414 C G TRMT2A Missense_Mutation p.D6H 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.49) TCGA-ZF-A9RD-01 22 22890989 22890989 G A PRAME Nonsense_Mutation p.Q344* 0.35 TCGA-ZF-A9RD-01 2 105990124 105990124 G T FHL2 Missense_Mutation p.L75M 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-A9RD-01 2 11053992 11053992 G A KCNF1 Silent p.L480L 0.25 TCGA-ZF-A9RD-01 2 145147383 145147383 C T ZEB2 Missense_Mutation p.E1094K 0.06 deleterious(0.02) probably_damaging(0.98) TCGA-ZF-A9RD-01 2 154334957 154334957 G T RPRM Missense_Mutation p.F41L 0.20 tolerated(0.51) benign(0) TCGA-ZF-A9RD-01 2 154335117 154335117 G A RPRM 5'UTR 0.38 TCGA-ZF-A9RD-01 2 160585519 160585519 G C MARCH7 Splice_Site 0.44 TCGA-ZF-A9RD-01 2 179343227 179343227 C T FKBP7 5'UTR 0.15 TCGA-ZF-A9RD-01 2 179600731 179600731 G A TTN Silent p.F4814F 0.21 TCGA-ZF-A9RD-01 2 187519392 187519392 C G ITGAV Missense_Mutation p.F507L 0.31 deleterious(0.03) benign(0.2) TCGA-ZF-A9RD-01 2 191769883 191769883 G C GLS Missense_Mutation p.L323F 0.14 deleterious(0) probably_damaging(0.95) TCGA-ZF-A9RD-01 2 196545595 196545595 C G SLC39A10 Missense_Mutation p.H277D 0.10 tolerated(0.21) benign(0.139) TCGA-ZF-A9RD-01 2 21233296 21233296 C A APOB Missense_Mutation p.K2148N 0.07 benign(0.001) TCGA-ZF-A9RD-01 2 215301365 215301365 G C VWC2L Missense_Mutation p.E135Q 0.34 deleterious(0) probably_damaging(0.979) TCGA-ZF-A9RD-01 2 223554168 223554168 G A MOGAT1 Missense_Mutation p.R153Q 0.34 deleterious(0) possibly_damaging(0.56) TCGA-ZF-A9RD-01 2 241513629 241513629 C T RNPEPL1 Silent p.F115F 0.12 TCGA-ZF-A9RD-01 2 241702642 241702642 G A KIF1A Silent p.F630F 0.18 TCGA-ZF-A9RD-01 2 242572549 242572549 G A THAP4 Silent p.L341L 0.23 TCGA-ZF-A9RD-01 2 25039532 25039532 C T CENPO Silent p.L204L 0.17 TCGA-ZF-A9RD-01 2 44207058 44207058 G C LRPPRC Missense_Mutation p.L126V 0.35 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 2 48809003 48809003 G A STON1-GTF2A1L Missense_Mutation p.E411K 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9RD-01 2 61007912 61007912 C T PAPOLG Missense_Mutation p.R302W 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RD-01 2 65245211 65245211 G A SLC1A4 Silent p.A347A 0.14 TCGA-ZF-A9RD-01 2 73678021 73678021 C T ALMS1 Missense_Mutation p.S1455L 0.30 benign(0.222) TCGA-ZF-A9RD-01 2 73994324 73994324 C T DUSP11 Missense_Mutation p.D216N 0.10 deleterious(0.04) benign(0.333) TCGA-ZF-A9RD-01 2 80530562 80530562 A C LRRTM1 Missense_Mutation p.L128R 0.27 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RD-01 2 9630449 9630449 C G ADAM17 Missense_Mutation p.E778Q 0.38 tolerated_low_confidence(0.11) benign(0.015) TCGA-ZF-A9RD-01 3 14768468 14768468 G A C3orf20 Missense_Mutation p.E543K 0.42 tolerated(0.07) benign(0.109) TCGA-ZF-A9RD-01 3 154055956 154055956 G T GPR149 Missense_Mutation p.S576R 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 3 183211937 183211937 C G KLHL6 Missense_Mutation p.G427A 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-A9RD-01 3 196234835 196234835 C G SMCO1 Missense_Mutation p.E190Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RD-01 3 37365500 37365500 C G GOLGA4 Missense_Mutation p.S730C 0.50 benign(0.299) TCGA-ZF-A9RD-01 3 47162043 47162043 C G SETD2 Missense_Mutation p.Q1361H 0.34 tolerated_low_confidence(0.1) benign(0.002) TCGA-ZF-A9RD-01 3 69117079 69117079 G A UBA3 Missense_Mutation p.P143L 0.35 deleterious(0) probably_damaging(0.92) TCGA-ZF-A9RD-01 3 89445006 89445006 G A EPHA3 Silent p.T442T 0.42 TCGA-ZF-A9RD-01 4 113461187 113461187 C T C4orf21 Missense_Mutation p.E2002K 0.38 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RD-01 4 128811355 128811355 G T PLK4 Missense_Mutation p.R598S 0.35 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RD-01 4 16504433 16504433 G A LDB2 Silent p.L319L 0.35 TCGA-ZF-A9RD-01 4 172735776 172735776 C T GALNTL6 Silent p.F15F 0.37 TCGA-ZF-A9RD-01 4 2307227 2307227 G T ZFYVE28 Missense_Mutation p.H280Q 0.38 tolerated(0.19) possibly_damaging(0.66) TCGA-ZF-A9RD-01 4 7044575 7044575 T C CCDC96 Missense_Mutation p.S31G 0.38 tolerated_low_confidence(0.1) unknown(0) TCGA-ZF-A9RD-01 5 133326558 133326558 G A VDAC1 Missense_Mutation p.S104L 0.15 tolerated(0.31) benign(0.209) TCGA-ZF-A9RD-01 5 134033704 134033704 G A SEC24A Silent p.R741R 0.34 TCGA-ZF-A9RD-01 5 134346110 134346110 G A CATSPER3 Silent p.K328K 0.15 TCGA-ZF-A9RD-01 5 137488425 137488425 C T BRD8 Missense_Mutation p.D868N 0.28 tolerated_low_confidence(0.11) benign(0.091) TCGA-ZF-A9RD-01 5 140085332 140085332 G T ZMAT2 Missense_Mutation p.K197N 0.24 deleterious(0) benign(0.167) TCGA-ZF-A9RD-01 5 140085340 140085340 G A ZMAT2 Silent p.%3D 0.24 TCGA-ZF-A9RD-01 5 140167204 140167204 G A PCDHA1 Silent p.V443V 0.13 TCGA-ZF-A9RD-01 5 140604051 140604051 G T PCDHB14 Missense_Mutation p.G325V 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZF-A9RD-01 5 140745917 140745917 G T PCDHGA5 Missense_Mutation p.D674Y 0.31 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-ZF-A9RD-01 5 159680592 159680592 C T CCNJL Silent p.G367G 0.16 TCGA-ZF-A9RD-01 5 16475169 16475169 G C FAM134B Nonsense_Mutation p.S392* 0.30 TCGA-ZF-A9RD-01 5 167919789 167919789 G A RARS Silent p.V102V 0.20 TCGA-ZF-A9RD-01 5 171774337 171774337 C A SH3PXD2B Splice_Site p.X338_splice 0.39 TCGA-ZF-A9RD-01 5 78260297 78260297 G A ARSB Missense_Mutation p.S211L 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 5 80548609 80548609 A C CKMT2 Missense_Mutation p.N83T 0.34 tolerated(0.15) benign(0.009) TCGA-ZF-A9RD-01 6 150719394 150719394 G A IYD 3'UTR 0.59 TCGA-ZF-A9RD-01 6 31895486 31895486 C T CFB 5'UTR 0.49 TCGA-ZF-A9RD-01 6 55147170 55147170 C G HCRTR2 Nonsense_Mutation p.S418* 0.08 TCGA-ZF-A9RD-01 6 99849333 99849333 C G PNISR Missense_Mutation p.E501Q 0.47 tolerated_low_confidence(0.22) possibly_damaging(0.607) TCGA-ZF-A9RD-01 6 99894186 99894186 C T USP45 Missense_Mutation p.D488N 0.46 tolerated(0.13) benign(0.182) TCGA-ZF-A9RD-01 7 107314747 107314747 G T SLC26A4 Missense_Mutation p.R185I 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RD-01 7 112723536 112723536 G A GPR85 3'UTR 0.30 TCGA-ZF-A9RD-01 7 138333863 138333863 G A SVOPL Missense_Mutation p.S185F 0.22 deleterious(0) probably_damaging(0.954) TCGA-ZF-A9RD-01 7 142836242 142836242 C T PIP Silent p.D92D 0.22 TCGA-ZF-A9RD-01 7 48033970 48033970 G A SUN3 Missense_Mutation p.S268L 0.35 deleterious(0.03) probably_damaging(0.924) TCGA-ZF-A9RD-01 7 51287509 51287509 C A COBL Silent p.L58L 0.19 TCGA-ZF-A9RD-01 7 6227307 6227307 G A CYTH3 Silent p.L55L 0.18 TCGA-ZF-A9RD-01 7 66453442 66453442 T C SBDS Silent p.L223L 0.25 TCGA-ZF-A9RD-01 7 76019306 76019306 G A SRCRB4D 3'UTR 0.33 TCGA-ZF-A9RD-01 7 7680043 7680043 C A RPA3 Missense_Mutation p.D3Y 0.21 deleterious(0) possibly_damaging(0.889) TCGA-ZF-A9RD-01 7 94944794 94944794 C A PON1 Missense_Mutation p.K70N 0.26 deleterious(0.04) benign(0.191) TCGA-ZF-A9RD-01 7 99704883 99704883 G A TAF6 Nonsense_Mutation p.Q711* 0.29 TCGA-ZF-A9RD-01 8 6389913 6389913 C T ANGPT2 Silent p.G128G 0.24 TCGA-ZF-A9RD-01 8 77776768 77776768 C G ZFHX4 Missense_Mutation p.F3606L 0.43 probably_damaging(0.961) TCGA-ZF-A9RD-01 9 109690214 109690214 G C ZNF462 Missense_Mutation p.D1341H 0.18 probably_damaging(0.998) TCGA-ZF-A9RD-01 9 114289585 114289585 G C ZNF483 5'UTR 0.26 TCGA-ZF-A9RD-01 9 116930187 116930187 C T COL27A1 Missense_Mutation p.R118C 0.46 unknown(0) TCGA-ZF-A9RD-01 9 124522515 124522515 G T DAB2IP Missense_Mutation p.G295C 0.47 deleterious(0.01) possibly_damaging(0.716) TCGA-ZF-A9RD-01 9 140074760 140074760 G A ANAPC2 Missense_Mutation p.P588L 0.04 tolerated(0.17) benign(0.003) TCGA-ZF-A9RD-01 9 21974695 21974696 - T CDKN2A Nonsense_Mutation p.Y44* 0.44 TCGA-ZF-A9RD-01 9 73477856 73477856 A T TRPM3 Missense_Mutation p.F144I 0.52 deleterious(0.02) benign(0.034) TCGA-ZF-A9RD-01 9 86457210 86457210 C T KIF27 Silent p.K1221K 0.46 TCGA-ZF-A9RD-01 9 90501317 90501317 C A SPATA31E1 Missense_Mutation p.Q639K 0.44 tolerated(0.42) possibly_damaging(0.713) TCGA-ZF-A9RD-01 9 95085758 95085758 A G NOL8 Missense_Mutation p.I56T 0.28 deleterious(0) possibly_damaging(0.899) TCGA-ZF-A9RD-01 9 95165608 95165608 G A OGN Missense_Mutation p.R28C 0.25 tolerated(0.18) benign(0.42) TCGA-ZF-A9RD-01 9 98238357 98238357 C T PTCH1 Missense_Mutation p.A563T 0.39 deleterious(0.02) possibly_damaging(0.603) TCGA-ZF-A9RD-01 9 98270475 98270475 C T PTCH1 Missense_Mutation p.D57N 0.41 tolerated(0.34) benign(0.362) TCGA-ZF-A9RD-01 X 106093528 106093528 C T TBC1D8B Missense_Mutation p.T704I 0.12 tolerated(0.05) benign(0.235) TCGA-ZF-A9RD-01 X 114877631 114877631 G C PLS3 Missense_Mutation p.D332H 0.19 deleterious(0) probably_damaging(0.97) TCGA-ZF-A9RD-01 X 123224564 123224564 G A STAG2 Missense_Mutation p.M1139I 0.11 tolerated_low_confidence(0.33) benign(0.001) TCGA-ZF-A9RD-01 X 139865950 139865950 C T CDR1 Nonsense_Mutation p.W194* 0.29 TCGA-ZF-A9RD-01 X 27998290 27998290 C T DCAF8L1 Missense_Mutation p.D388N 0.28 tolerated(0.23) benign(0.006) TCGA-ZF-A9RD-01 X 30872938 30872938 G T TAB3 Missense_Mutation p.P282T 0.20 tolerated(0.17) probably_damaging(0.997) TCGA-ZF-A9RD-01 X 37985988 37985988 A G SYTL5 3'UTR 0.20 TCGA-ZF-A9RD-01 X 41204495 41204495 G A DDX3X Missense_Mutation p.R363K 0.11 deleterious(0.05) benign(0.104) TCGA-ZF-A9RD-01 X 44948987 44948987 G C KDM6A Splice_Site p.X1183_splice 0.41 TCGA-ZF-A9RD-01 X 47842712 47842712 C T ZNF182 Missense_Mutation p.E58K 0.32 deleterious(0) possibly_damaging(0.9) TCGA-ZF-A9RD-01 X 48891044 48891044 T A TFE3 Missense_Mutation p.R358W 0.24 deleterious(0) benign(0.068) TCGA-ZF-A9RD-01 X 49856837 49856837 G A CLCN5 Silent p.Q804Q 0.15 TCGA-ZF-A9RD-01 X 77378444 77378444 G A PGK1 Missense_Mutation p.E252K 0.10 tolerated(0.57) benign(0.005) TCGA-ZF-A9RD-01 X 7812059 7812059 C T VCX 3'UTR 0.29 TCGA-ZF-A9RE-01 10 38241968 38241968 T A ZNF25 Missense_Mutation p.K153I 0.51 deleterious(0) benign(0.35) TCGA-ZF-A9RE-01 10 95111586 95111587 AG - MYOF Frame_Shift_Del p.I1166Mfs*10 0.39 TCGA-ZF-A9RE-01 11 110450479 110450479 A T ARHGAP20 Missense_Mutation p.I1064K 0.37 tolerated_low_confidence(0.99) benign(0.014) TCGA-ZF-A9RE-01 11 1272702 1272702 G A MUC5B Silent p.T4864T 0.04 TCGA-ZF-A9RE-01 11 1651678 1651678 G A KRTAP5-5 Missense_Mutation p.S203N 0.04 deleterious_low_confidence(0.03) unknown(0) TCGA-ZF-A9RE-01 11 26681860 26681860 C A ANO3 Missense_Mutation p.P939T 0.04 deleterious(0) probably_damaging(1) TCGA-ZF-A9RE-01 11 55607038 55607038 C A OR5D16 Missense_Mutation p.H271N 0.08 tolerated(0.22) benign(0.02) TCGA-ZF-A9RE-01 12 102108314 102108314 C G CHPT1 Missense_Mutation p.R152G 0.05 tolerated(0.3) benign(0.09) TCGA-ZF-A9RE-01 12 110290360 110290360 C G GLTP Nonstop_Mutation p.*210Yext*28 0.08 TCGA-ZF-A9RE-01 12 132325334 132325334 C T MMP17 Silent p.P213P 0.43 TCGA-ZF-A9RE-01 12 6182827 6182827 C A VWF Nonsense_Mutation p.E319* 0.11 TCGA-ZF-A9RE-01 13 101910815 101910815 G A NALCN Silent p.Y415Y 0.70 TCGA-ZF-A9RE-01 13 20012253 20012253 G A TPTE2 Silent p.S338S 0.30 TCGA-ZF-A9RE-01 14 65056036 65056036 C T PPP1R36 Missense_Mutation p.H417Y 0.09 deleterious_low_confidence(0) benign(0.093) TCGA-ZF-A9RE-01 14 71444608 71444608 T A PCNX Missense_Mutation p.S518R 0.32 tolerated(0.49) benign(0.001) TCGA-ZF-A9RE-01 14 95562662 95562662 T C DICER1 Missense_Mutation p.E1532G 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9RE-01 16 15841523 15841523 G C MYH11 Missense_Mutation p.T779S 0.06 probably_damaging(0.931) TCGA-ZF-A9RE-01 16 67863341 67863341 G A CENPT Missense_Mutation p.A422V 0.62 tolerated(0.09) benign(0.008) TCGA-ZF-A9RE-01 16 708562 708562 C T WDR90 Missense_Mutation p.T935M 0.27 deleterious(0.02) benign(0.002) TCGA-ZF-A9RE-01 17 19555084 19555084 C T ALDH3A2 Silent p.I126I 0.20 TCGA-ZF-A9RE-01 17 34870990 34870990 G A MYO19 Missense_Mutation p.R195C 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-A9RE-01 17 59112096 59112096 C G BCAS3 Missense_Mutation p.I584M 0.08 tolerated(0.16) benign(0.004) TCGA-ZF-A9RE-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.56 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RE-01 17 76354650 76354650 A T SOCS3 Missense_Mutation p.L176Q 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-A9RE-01 19 15734900 15734904 GAATG - CYP4F8 Intron 0.21 TCGA-ZF-A9RE-01 19 16860181 16860181 G A NWD1 Missense_Mutation p.R243H 0.40 tolerated(0.64) benign(0.002) TCGA-ZF-A9RE-01 19 23159408 23159408 G T ZNF728 Missense_Mutation p.T244N 0.30 tolerated(0.1) possibly_damaging(0.74) TCGA-ZF-A9RE-01 19 35510308 35510308 G A GRAMD1A Missense_Mutation p.R449H 0.41 tolerated(0.12) benign(0.001) TCGA-ZF-A9RE-01 19 52869685 52869685 G T ZNF610 Missense_Mutation p.V352F 0.05 tolerated(0.08) benign(0.087) TCGA-ZF-A9RE-01 19 57036524 57036524 G A ZNF471 Missense_Mutation p.R363H 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-ZF-A9RE-01 1 177199212 177199212 G A BRINP2 Missense_Mutation p.R67H 0.41 tolerated(0.52) probably_damaging(0.994) TCGA-ZF-A9RE-01 1 36766641 36766642 - T THRAP3 Frame_Shift_Ins p.P822Sfs*3 0.29 TCGA-ZF-A9RE-01 1 46120874 46120874 G C GPBP1L1 Missense_Mutation p.R60G 0.27 deleterious(0) possibly_damaging(0.629) TCGA-ZF-A9RE-01 1 63269512 63269512 G T ATG4C Missense_Mutation p.A19S 0.24 deleterious(0.02) benign(0.027) TCGA-ZF-A9RE-01 1 89583361 89583361 G T GBP2 Missense_Mutation p.A175E 0.08 deleterious(0.02) benign(0.005) TCGA-ZF-A9RE-01 1 89655755 89655755 T G GBP4 Missense_Mutation p.K388T 0.06 deleterious(0) probably_damaging(0.947) TCGA-ZF-A9RE-01 20 61143430 61143430 G T C20orf166 5'Flank 0.22 TCGA-ZF-A9RE-01 21 15858132 15858132 A G SAMSN1 3'UTR 0.40 TCGA-ZF-A9RE-01 22 17072213 17072213 G C CCT8L2 Missense_Mutation p.P410A 0.25 deleterious(0.04) probably_damaging(1) TCGA-ZF-A9RE-01 22 32590424 32590424 A T RFPL2 Missense_Mutation p.L58H 0.28 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-ZF-A9RE-01 22 39120312 39120312 G A GTPBP1 Silent p.K323K 0.25 TCGA-ZF-A9RE-01 2 125262121 125262121 G T CNTNAP5 Nonsense_Mutation p.E438* 0.33 TCGA-ZF-A9RE-01 2 166536027 166536027 G C CSRNP3 Missense_Mutation p.E508Q 0.07 tolerated_low_confidence(0.15) benign(0.155) TCGA-ZF-A9RE-01 2 215821416 215821416 G A ABCA12 Silent p.G2068G 0.35 TCGA-ZF-A9RE-01 2 225376176 225376176 T C CUL3 Missense_Mutation p.I260V 0.06 tolerated(0.19) benign(0.308) TCGA-ZF-A9RE-01 2 27703993 27703993 G A IFT172 Silent p.S235S 0.09 TCGA-ZF-A9RE-01 2 3750128 3750128 C T ALLC Missense_Mutation p.S384L 0.35 tolerated_low_confidence(0.06) benign(0.001) TCGA-ZF-A9RE-01 2 49189810 49189810 A T FSHR 3'UTR 0.38 TCGA-ZF-A9RE-01 3 132347272 132347272 G T ACAD11 Missense_Mutation p.L328I 0.03 tolerated(0.14) possibly_damaging(0.742) TCGA-ZF-A9RE-01 3 153943704 153943704 T C ARHGEF26 Silent p.Y665Y 0.36 TCGA-ZF-A9RE-01 3 178952090 178952090 G C PIK3CA Missense_Mutation p.G1049R 0.38 tolerated(0.09) possibly_damaging(0.487) TCGA-ZF-A9RE-01 3 4714966 4714966 G A ITPR1 Missense_Mutation p.R769H 0.08 tolerated(0.23) possibly_damaging(0.694) TCGA-ZF-A9RE-01 3 93603730 93603730 C T PROS1 Missense_Mutation p.R445H 0.40 deleterious(0.01) possibly_damaging(0.638) TCGA-ZF-A9RE-01 4 1806099 1806099 A G FGFR3 Missense_Mutation p.Y375C 0.80 deleterious(0) possibly_damaging(0.882) TCGA-ZF-A9RE-01 4 36179490 36179490 C T ARAP2 Missense_Mutation p.V606M 0.32 deleterious(0.02) possibly_damaging(0.903) TCGA-ZF-A9RE-01 5 140554489 140554489 G A PCDHB7 Silent p.A691A 0.04 TCGA-ZF-A9RE-01 5 140720764 140720764 C T PCDHGA2 Silent p.G742G 0.45 TCGA-ZF-A9RE-01 5 169701311 169701311 C T LCP2 Silent p.S106S 0.25 TCGA-ZF-A9RE-01 6 147560375 147560375 A G STXBP5 Missense_Mutation p.I134V 0.42 tolerated(0.49) benign(0) TCGA-ZF-A9RE-01 6 30890956 30890956 G A VARS2 Missense_Mutation p.R784H 0.58 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RE-01 6 73843305 73843305 G A KCNQ5 Missense_Mutation p.R489Q 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-ZF-A9RE-01 6 99854026 99854026 C T PNISR Missense_Mutation p.E295K 0.16 tolerated(0.09) possibly_damaging(0.626) TCGA-ZF-A9RE-01 7 100451804 100451804 C G SLC12A9 5'UTR 0.33 TCGA-ZF-A9RE-01 7 124487052 124487052 C A POT1 Missense_Mutation p.S317I 0.35 tolerated(0.14) possibly_damaging(0.723) TCGA-ZF-A9RE-01 7 127847998 127847998 C T MIR129-1 3'Flank 0.12 TCGA-ZF-A9RE-01 7 134642974 134642974 C T CALD1 Missense_Mutation p.S665L 0.38 tolerated(0.14) benign(0.134) TCGA-ZF-A9RE-01 7 94827700 94827700 G T PPP1R9A Missense_Mutation p.E598D 0.31 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RE-01 8 133153471 133153471 G T KCNQ3 Missense_Mutation p.P457H 0.32 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9RE-01 8 145753321 145753321 G T C8orf82 Intron 0.26 TCGA-ZF-A9RE-01 8 16963025 16963025 C T MICU3 Nonsense_Mutation p.R397* 0.09 TCGA-ZF-A9RE-01 8 55540138 55540138 C T RP1 Silent p.I1232I 0.04 TCGA-ZF-A9RE-01 8 92350397 92350411 CTTGTTATTGCACCA - SLC26A7 In_Frame_Del p.A272_N277delinsD 0.24 TCGA-ZF-A9RE-01 9 113170982 113170982 T G SVEP1 Missense_Mutation p.S2300R 0.06 benign(0.148) TCGA-ZF-A9RE-01 9 138712777 138712777 G C CAMSAP1 Missense_Mutation p.P1244A 0.21 deleterious(0) possibly_damaging(0.542) TCGA-ZF-A9RE-01 9 37034032 37034032 G A PAX5 5'UTR 0.09 TCGA-ZF-A9RE-01 9 847049 847049 A C DMRT1 Missense_Mutation p.K148N 0.71 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RE-01 X 109695650 109695650 C A RGAG1 Missense_Mutation p.S602Y 0.14 deleterious(0) probably_damaging(0.957) TCGA-ZF-A9RE-01 X 123202462 123202462 T C STAG2 Missense_Mutation p.C772R 0.40 deleterious(0) probably_damaging(0.983) TCGA-ZF-A9RE-01 X 134482911 134482911 A T ZNF449 Intron 0.15 TCGA-ZF-A9RE-01 X 134654825 134654825 C A DDX26B 5'UTR 0.09 TCGA-ZF-A9RE-01 X 138643822 138643822 G T F9 Silent p.V326V 0.12 TCGA-ZF-A9RE-01 X 153039009 153039009 A G PLXNB3 Silent p.L1063L 0.37 TCGA-ZF-A9RE-01 X 154157720 154157720 C A F8 Nonsense_Mutation p.E1449* 0.33 TCGA-ZF-A9RE-01 X 35820879 35820879 C T MAGEB16 Missense_Mutation p.T189I 0.10 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RE-01 X 44870265 44870266 - T KDM6A Splice_Site p.X148_splice 0.26 TCGA-ZF-A9RE-01 X 73961744 73961744 C T KIAA2022 Missense_Mutation p.S883N 0.44 tolerated(0.27) benign(0.003) TCGA-ZF-A9RE-01 X 99662022 99662022 T C PCDH19 Missense_Mutation p.Q525R 0.32 deleterious(0.01) possibly_damaging(0.752) TCGA-ZF-A9RF-01 10 112269920 112269920 G A DUSP5 Silent p.R297R 0.47 TCGA-ZF-A9RF-01 10 118434436 118434436 G C HSPA12A Silent p.L628L 0.49 TCGA-ZF-A9RF-01 10 12252321 12252321 G A CDC123 Silent p.T79T 0.39 TCGA-ZF-A9RF-01 10 124594532 124594532 G A CUZD1 Nonsense_Mutation p.Q358* 0.24 TCGA-ZF-A9RF-01 10 124594541 124594541 G C CUZD1 Missense_Mutation p.R355G 0.25 deleterious(0) probably_damaging(0.974) TCGA-ZF-A9RF-01 10 25887025 25887025 G T GPR158 Missense_Mutation p.V824L 0.23 deleterious(0.03) benign(0.198) TCGA-ZF-A9RF-01 10 27409451 27409451 C G YME1L1 Missense_Mutation p.D499H 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 10 48771356 48771356 G T PTPN20B Missense_Mutation p.P181Q 0.30 tolerated(0.2) possibly_damaging(0.877) TCGA-ZF-A9RF-01 10 5138757 5138757 C G AKR1C3 Missense_Mutation p.F80L 0.38 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 10 5995066 5995066 G - IL15RA Frame_Shift_Del p.H266Tfs*11 0.24 TCGA-ZF-A9RF-01 10 7218076 7218076 G A SFMBT2 Silent p.D620D 0.34 TCGA-ZF-A9RF-01 10 75053221 75053221 G T TTC18 Intron 0.38 TCGA-ZF-A9RF-01 10 89544297 89544297 C T ATAD1 Silent p.Q171Q 0.55 TCGA-ZF-A9RF-01 10 98743663 98743663 G T C10orf12 Missense_Mutation p.W839L 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RF-01 11 10647851 10647851 G C MRVI1 Missense_Mutation p.L344V 0.25 tolerated(0.77) possibly_damaging(0.863) TCGA-ZF-A9RF-01 11 108205823 108205823 G A ATM Missense_Mutation p.R2713K 0.57 tolerated(0.06) possibly_damaging(0.809) TCGA-ZF-A9RF-01 11 118375563 118375563 C T KMT2A Missense_Mutation p.P2986S 0.55 benign(0.064) TCGA-ZF-A9RF-01 11 118376908 118376908 C G KMT2A Missense_Mutation p.S3434C 0.59 probably_damaging(0.988) TCGA-ZF-A9RF-01 11 124623702 124623702 G C ESAM Missense_Mutation p.S338C 0.71 deleterious(0) possibly_damaging(0.815) TCGA-ZF-A9RF-01 11 134048611 134048611 C A NCAPD3 Missense_Mutation p.E900D 0.61 tolerated(0.47) benign(0.001) TCGA-ZF-A9RF-01 11 134048613 134048613 C A NCAPD3 Nonsense_Mutation p.E900* 0.59 TCGA-ZF-A9RF-01 11 134114896 134114896 C T VPS26B Silent p.I262I 0.52 TCGA-ZF-A9RF-01 11 15198646 15198666 TTTTTCTACAGATTGAGAAGC - INSC Splice_Site p.X182_splice 0.13 TCGA-ZF-A9RF-01 11 17552802 17552802 C A USH1C Nonsense_Mutation p.E96* 0.29 TCGA-ZF-A9RF-01 11 4615679 4615679 G C OR52I1 Missense_Mutation p.K137N 0.13 tolerated(0.13) benign(0.013) TCGA-ZF-A9RF-01 11 47304093 47304093 G A MADD Missense_Mutation p.R544K 0.20 tolerated(0.21) benign(0.02) TCGA-ZF-A9RF-01 11 51516024 51516024 T C OR4C46 Missense_Mutation p.F248S 0.21 deleterious_low_confidence(0.04) benign(0.279) TCGA-ZF-A9RF-01 11 5172982 5172982 G T OR52A1 Silent p.A206A 0.12 TCGA-ZF-A9RF-01 11 555093 555093 C T C11orf35 Missense_Mutation p.D598N 0.41 deleterious(0) benign(0.261) TCGA-ZF-A9RF-01 11 55606795 55606795 T C OR5D16 Missense_Mutation p.S190P 0.22 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9RF-01 11 5653496 5653496 T C TRIM6-TRIM34 Missense_Mutation p.S333P 0.13 tolerated(0.2) benign(0.008) TCGA-ZF-A9RF-01 11 62299454 62299454 T A AHNAK Missense_Mutation p.N812I 0.28 probably_damaging(0.962) TCGA-ZF-A9RF-01 11 63057640 63057640 G A SLC22A10 Translation_Start_Site p.M1? 0.48 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 12 103352695 103352695 G A ASCL1 Missense_Mutation p.E225K 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-ZF-A9RF-01 12 112667636 112667636 C G HECTD4 Missense_Mutation p.E1983Q 0.28 probably_damaging(0.942) TCGA-ZF-A9RF-01 12 120936121 120936121 C G DYNLL1 3'UTR 0.44 TCGA-ZF-A9RF-01 12 132589621 132589621 G C EP400NL Missense_Mutation p.Q220H 0.28 tolerated_low_confidence(0.06) probably_damaging(0.965) TCGA-ZF-A9RF-01 12 18499583 18499583 G C PIK3C2G Missense_Mutation p.E480Q 0.11 tolerated(0.14) possibly_damaging(0.461) TCGA-ZF-A9RF-01 12 18650645 18650645 G A PIK3C2G Missense_Mutation p.M952I 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-A9RF-01 12 20790054 20790054 C A PDE3A Silent p.P674P 0.31 TCGA-ZF-A9RF-01 12 45173474 45173474 T C NELL2 Missense_Mutation p.Q243R 0.40 deleterious(0) probably_damaging(0.994) TCGA-ZF-A9RF-01 12 48359105 48359105 T A TMEM106C Missense_Mutation p.D76E 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-ZF-A9RF-01 12 49743194 49743194 T A DNAJC22 Missense_Mutation p.V180E 0.30 tolerated(0.1) possibly_damaging(0.575) TCGA-ZF-A9RF-01 12 51882559 51882559 T C SLC4A8 Missense_Mutation p.I788T 0.35 deleterious(0) possibly_damaging(0.677) TCGA-ZF-A9RF-01 12 52910921 52910921 C T KRT5 Silent p.L396L 0.23 TCGA-ZF-A9RF-01 12 53586139 53586139 G A ITGB7 Silent p.V710V 0.24 TCGA-ZF-A9RF-01 12 54405268 54405268 G A HOXC8 3'UTR 0.23 TCGA-ZF-A9RF-01 12 56498371 56498371 C T PA2G4 5'UTR 0.25 TCGA-ZF-A9RF-01 12 57175797 57175797 C T HSD17B6 Missense_Mutation p.P118L 0.20 deleterious(0.01) benign(0.098) TCGA-ZF-A9RF-01 12 58020392 58020392 G C B4GALNT1 3'UTR 0.25 TCGA-ZF-A9RF-01 12 6421351 6421351 A G PLEKHG6 5'UTR 0.45 TCGA-ZF-A9RF-01 12 6422938 6422938 C T PLEKHG6 Silent p.S94S 0.14 TCGA-ZF-A9RF-01 12 78553004 78553004 G A NAV3 Missense_Mutation p.E1603K 0.21 deleterious(0) probably_damaging(0.937) TCGA-ZF-A9RF-01 13 23906504 23906504 C T SACS Silent p.Q3837Q 0.16 TCGA-ZF-A9RF-01 13 23913994 23913994 G A SACS Missense_Mutation p.L1341F 0.43 probably_damaging(0.972) TCGA-ZF-A9RF-01 13 32913648 32913649 - T BRCA2 Frame_Shift_Ins p.S1720Ffs*7 0.32 TCGA-ZF-A9RF-01 13 49027244 49027244 A G RB1 Missense_Mutation p.D604G 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-A9RF-01 13 50087250 50087250 G C PHF11 Missense_Mutation p.R91T 0.33 tolerated(0.2) possibly_damaging(0.759) TCGA-ZF-A9RF-01 13 98642391 98642391 G C IPO5 Missense_Mutation p.G178A 0.20 tolerated(0.14) probably_damaging(1) TCGA-ZF-A9RF-01 14 101393713 101393713 C G SNORD113-2 RNA 0.25 TCGA-ZF-A9RF-01 14 104571731 104571731 C A ASPG Missense_Mutation p.Q373K 0.25 tolerated(0.71) benign(0.021) TCGA-ZF-A9RF-01 14 105418771 105418771 G A AHNAK2 Missense_Mutation p.P1006L 0.33 benign(0.062) TCGA-ZF-A9RF-01 14 22133302 22133302 C T OR4E2 Silent p.D2D 0.04 TCGA-ZF-A9RF-01 14 24766076 24766076 G A DHRS1 Silent p.L54L 0.30 TCGA-ZF-A9RF-01 14 47426694 47426694 C T MDGA2 Missense_Mutation p.D658N 0.44 tolerated(0.19) benign(0.408) TCGA-ZF-A9RF-01 14 53619666 53619666 C T DDHD1 Missense_Mutation p.D51N 0.38 deleterious_low_confidence(0.01) benign(0.326) TCGA-ZF-A9RF-01 14 60950464 60950464 C T C14orf39 Missense_Mutation p.E60K 0.12 deleterious(0.01) possibly_damaging(0.801) TCGA-ZF-A9RF-01 14 63779780 63779780 G A GPHB5 RNA 0.40 TCGA-ZF-A9RF-01 14 68118199 68118199 C G VTI1B Splice_Site p.X201_splice 0.42 TCGA-ZF-A9RF-01 14 86087861 86087861 G A FLRT2 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-ZF-A9RF-01 14 86088469 86088469 C A FLRT2 Missense_Mutation p.T204K 0.13 tolerated(0.16) possibly_damaging(0.73) TCGA-ZF-A9RF-01 14 86088480 86088480 C A FLRT2 Missense_Mutation p.R208S 0.16 deleterious(0.02) probably_damaging(0.924) TCGA-ZF-A9RF-01 15 101938723 101938723 G A PCSK6 Silent p.I293I 0.34 TCGA-ZF-A9RF-01 15 44615185 44615185 C T CASC4 Missense_Mutation p.S117L 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RF-01 15 48055291 48055291 A G SEMA6D Missense_Mutation p.N246S 0.25 tolerated(0.53) benign(0.023) TCGA-ZF-A9RF-01 15 48736840 48736840 G C FBN1 Missense_Mutation p.L1979V 0.22 benign(0.006) TCGA-ZF-A9RF-01 15 49426283 49426283 C G COPS2 Missense_Mutation p.L253F 0.07 deleterious(0) possibly_damaging(0.823) TCGA-ZF-A9RF-01 15 50534524 50534524 C T HDC Missense_Mutation p.S641N 0.19 deleterious_low_confidence(0.04) benign(0.012) TCGA-ZF-A9RF-01 15 57913883 57913883 C T MYZAP Silent p.L132L 0.37 TCGA-ZF-A9RF-01 15 60760412 60760412 G T NARG2 Missense_Mutation p.L86I 0.18 tolerated(0.41) possibly_damaging(0.785) TCGA-ZF-A9RF-01 16 1535941 1535941 C G PTX4 Nonstop_Mutation p.*474Sext*? 0.55 TCGA-ZF-A9RF-01 16 23598533 23598533 C G NDUFAB1 Missense_Mutation p.K92N 0.47 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9RF-01 16 27784442 27784442 C T KIAA0556 Silent p.L1407L 0.21 TCGA-ZF-A9RF-01 16 30594313 30594313 C A ZNF785 Missense_Mutation p.K262N 0.27 tolerated(0.08) probably_damaging(0.987) TCGA-ZF-A9RF-01 16 33020795 33020795 C T IGHV3OR16-8 Missense_Mutation p.S68L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.464) TCGA-ZF-A9RF-01 16 3340588 3340588 G C ZNF263 3'UTR 0.45 TCGA-ZF-A9RF-01 16 56377688 56377688 C A GNAO1 Missense_Mutation p.F297L 0.33 deleterious(0.03) benign(0.128) TCGA-ZF-A9RF-01 16 67981231 67981231 C G SLC12A4 Intron 0.36 TCGA-ZF-A9RF-01 16 69184546 69184546 C T CIRH1A Missense_Mutation p.P282L 0.51 tolerated(0.3) benign(0.064) TCGA-ZF-A9RF-01 16 746932 746932 C T FBXL16 Silent p.V158V 0.50 TCGA-ZF-A9RF-01 16 81944312 81944312 C G PLCG2 Missense_Mutation p.H641D 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 16 84193300 84193301 AA T DNAAF1 Frame_Shift_Del p.N255Tfs*18 0.36 TCGA-ZF-A9RF-01 17 10436640 10436640 G C MYH2 Missense_Mutation p.F801L 0.19 tolerated(0.49) benign(0.001) TCGA-ZF-A9RF-01 17 18219783 18219783 C G SMCR8 Missense_Mutation p.S227C 0.27 deleterious(0) probably_damaging(0.974) TCGA-ZF-A9RF-01 17 18343801 18343801 C A KRT16P1 RNA 0.45 TCGA-ZF-A9RF-01 17 1944476 1944476 G A DPH1 Splice_Site p.X367_splice 0.46 TCGA-ZF-A9RF-01 17 29576048 29576048 C T NF1 Nonsense_Mutation p.Q1341* 0.24 TCGA-ZF-A9RF-01 17 29653188 29653188 C - NF1 Frame_Shift_Del p.T1730Pfs*4 0.30 TCGA-ZF-A9RF-01 17 30677175 30677175 C T ZNF207 5'UTR 0.19 TCGA-ZF-A9RF-01 17 35512649 35512649 G A ACACA Silent p.L1801L 0.34 TCGA-ZF-A9RF-01 17 37866671 37866671 G C ERBB2 Missense_Mutation p.E280Q 0.38 tolerated(1) benign(0.052) TCGA-ZF-A9RF-01 17 39766142 39766142 G T KRT16 3'UTR 0.19 TCGA-ZF-A9RF-01 17 39766161 39766161 G A KRT16 3'UTR 0.16 TCGA-ZF-A9RF-01 17 41165209 41165209 A G IFI35 Missense_Mutation p.K89R 0.29 deleterious(0.03) possibly_damaging(0.454) TCGA-ZF-A9RF-01 17 43364359 43364359 G T MAP3K14 RNA 0.45 TCGA-ZF-A9RF-01 17 7189033 7189033 C T SLC2A4 Missense_Mutation p.P378S 0.46 tolerated(0.71) benign(0.101) TCGA-ZF-A9RF-01 17 73830165 73830165 C G UNC13D Silent p.L786L 0.14 TCGA-ZF-A9RF-01 17 73836641 73836641 G A UNC13D Missense_Mutation p.R234W 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-ZF-A9RF-01 17 74010548 74010548 C A EVPL Missense_Mutation p.D778Y 0.34 deleterious(0) probably_damaging(0.986) TCGA-ZF-A9RF-01 17 74287416 74287416 G C QRICH2 Missense_Mutation p.P965R 0.51 deleterious(0.01) benign(0.379) TCGA-ZF-A9RF-01 17 7577097 7577097 C G TP53 Missense_Mutation p.D281H 0.24 tolerated(0.07) probably_damaging(0.998) TCGA-ZF-A9RF-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.25 deleterious(0.04) possibly_damaging(0.83) TCGA-ZF-A9RF-01 18 23619308 23619308 T A SS18 Missense_Mutation p.Q240H 0.11 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-ZF-A9RF-01 18 34854295 34854295 G A CELF4 Silent p.A260A 0.18 TCGA-ZF-A9RF-01 18 56203494 56203494 C T ALPK2 Missense_Mutation p.D1309N 0.37 tolerated(1) benign(0.001) TCGA-ZF-A9RF-01 19 10163262 10163262 C T C3P1 RNA 0.19 TCGA-ZF-A9RF-01 19 11144518 11144518 G A SMARCA4 Missense_Mutation p.D1284N 0.19 benign(0) TCGA-ZF-A9RF-01 19 15756633 15756633 C G CYP4F3 Missense_Mutation p.I101M 0.40 deleterious(0.01) benign(0.099) TCGA-ZF-A9RF-01 19 18885765 18885765 C T CRTC1 Missense_Mutation p.A510V 0.19 tolerated(0.13) benign(0.135) TCGA-ZF-A9RF-01 19 19756291 19756291 G A ATP13A1 Silent p.L1185L 0.24 TCGA-ZF-A9RF-01 19 22585678 22585678 C A ZNF98 Missense_Mutation p.A56S 0.18 deleterious(0.03) benign(0.108) TCGA-ZF-A9RF-01 19 3382241 3382241 G A NFIC Missense_Mutation p.D188N 0.25 tolerated(0.05) benign(0.075) TCGA-ZF-A9RF-01 19 35657156 35657156 G A FXYD5 Missense_Mutation p.E139K 0.28 deleterious(0.03) probably_damaging(0.989) TCGA-ZF-A9RF-01 19 37118246 37118246 C T ZNF382 Missense_Mutation p.H483Y 0.39 tolerated(0.22) benign(0.001) TCGA-ZF-A9RF-01 19 37904259 37904259 C G ZNF569 Missense_Mutation p.R434T 0.06 deleterious(0.02) benign(0.203) TCGA-ZF-A9RF-01 19 43708147 43708147 C A PSG4 Silent p.L107L 0.22 TCGA-ZF-A9RF-01 19 44131011 44131011 C G CADM4 Missense_Mutation p.E142Q 0.43 tolerated(0.11) probably_damaging(0.998) TCGA-ZF-A9RF-01 19 49972189 49972189 C T ALDH16A1 Silent p.R731R 0.43 TCGA-ZF-A9RF-01 19 57646888 57646888 G C ZIM3 Missense_Mutation p.H273D 0.50 deleterious(0) probably_damaging(0.92) TCGA-ZF-A9RF-01 19 5832467 5832467 G C FUT6 Missense_Mutation p.Q38E 0.26 tolerated(0.22) benign(0.155) TCGA-ZF-A9RF-01 19 8551106 8551106 G T HNRNPM Silent p.P598P 0.26 TCGA-ZF-A9RF-01 1 11288788 11288788 G T MTOR Missense_Mutation p.F989L 0.34 deleterious(0.01) benign(0.334) TCGA-ZF-A9RF-01 1 116932261 116932261 G C ATP1A1 Missense_Mutation p.E319Q 0.44 tolerated(0.16) benign(0.034) TCGA-ZF-A9RF-01 1 119923722 119923722 G C HAO2 Missense_Mutation p.C5S 0.18 tolerated(0.2) possibly_damaging(0.463) TCGA-ZF-A9RF-01 1 120056868 120056868 A T HSD3B1 Missense_Mutation p.Q241L 0.12 tolerated(0.07) benign(0.002) TCGA-ZF-A9RF-01 1 145112384 145112384 C T SEC22B RNA 0.07 TCGA-ZF-A9RF-01 1 150811981 150811981 G A ARNT Missense_Mutation p.S141F 0.25 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 1 151288430 151288430 C A PI4KB Silent p.L188L 0.45 TCGA-ZF-A9RF-01 1 152330002 152330002 T A FLG2 Missense_Mutation p.K87M 0.12 unknown(0) TCGA-ZF-A9RF-01 1 153587462 153587462 C G S100A14 Missense_Mutation p.G72R 0.46 deleterious(0.03) benign(0.413) TCGA-ZF-A9RF-01 1 153748376 153748376 C T SLC27A3 Missense_Mutation p.P182S 0.66 tolerated_low_confidence(0.44) benign(0) TCGA-ZF-A9RF-01 1 154966178 154966178 T C LENEP Missense_Mutation p.M32T 0.09 tolerated_low_confidence(0.12) benign(0.092) TCGA-ZF-A9RF-01 1 155226076 155226076 G A SCAMP3 Silent p.F344F 0.28 TCGA-ZF-A9RF-01 1 155233004 155233004 G T CLK2 3'UTR 0.23 TCGA-ZF-A9RF-01 1 156084881 156084881 G A LMNA Missense_Mutation p.G58R 0.50 tolerated(0.72) benign(0.012) TCGA-ZF-A9RF-01 1 156911666 156911666 T - ARHGEF11 Frame_Shift_Del p.T1148Hfs*5 0.09 TCGA-ZF-A9RF-01 1 158225084 158225084 G A CD1A Missense_Mutation p.R90H 0.10 tolerated(0.1) benign(0) TCGA-ZF-A9RF-01 1 159505442 159505442 C A OR10J5 Missense_Mutation p.G119V 0.48 deleterious(0) benign(0.242) TCGA-ZF-A9RF-01 1 160517986 160517986 G C CD84 3'Flank 0.24 TCGA-ZF-A9RF-01 1 160771741 160771741 C T LY9 Intron 0.10 TCGA-ZF-A9RF-01 1 167666545 167666545 G A RCSD1 Silent p.V228V 0.12 TCGA-ZF-A9RF-01 1 16895715 16895715 C T NBPF1 Missense_Mutation p.E823K 0.10 tolerated(0.1) benign(0.19) TCGA-ZF-A9RF-01 1 170003619 170003619 T C KIFAP3 Silent p.G212G 0.21 TCGA-ZF-A9RF-01 1 173878936 173878936 C G SERPINC1 Missense_Mutation p.E303Q 0.48 deleterious(0.04) probably_damaging(0.975) TCGA-ZF-A9RF-01 1 176525994 176525994 C A PAPPA2 Missense_Mutation p.T179N 0.09 tolerated_low_confidence(0.31) benign(0.01) TCGA-ZF-A9RF-01 1 176664989 176664989 G A PAPPA2 Missense_Mutation p.A914T 0.10 deleterious(0) probably_damaging(0.983) TCGA-ZF-A9RF-01 1 182026765 182026765 G A ZNF648 Silent p.P127P 0.14 TCGA-ZF-A9RF-01 1 196876134 196876134 G A CFHR4 Missense_Mutation p.E194K 0.32 tolerated(0.25) possibly_damaging(0.896) TCGA-ZF-A9RF-01 1 196883793 196883793 C A CFHR4 Missense_Mutation p.T449K 0.30 tolerated(0.62) benign(0.095) TCGA-ZF-A9RF-01 1 201844303 201844303 G A IPO9 Missense_Mutation p.E988K 0.21 tolerated(0.1) benign(0.019) TCGA-ZF-A9RF-01 1 210970914 210970914 G T KCNH1 Missense_Mutation p.S617R 0.17 deleterious(0.01) possibly_damaging(0.562) TCGA-ZF-A9RF-01 1 216462698 216462698 G A USH2A Missense_Mutation p.P632L 0.38 benign(0.06) TCGA-ZF-A9RF-01 1 217622605 217622605 C G GPATCH2 Missense_Mutation p.G451A 0.26 tolerated(0.3) benign(0.003) TCGA-ZF-A9RF-01 1 237711775 237711775 G C RYR2 Missense_Mutation p.S984T 0.07 possibly_damaging(0.697) TCGA-ZF-A9RF-01 1 2422768 2422768 A T PLCH2 Silent p.G524G 0.17 TCGA-ZF-A9RF-01 1 27100139 27100139 C A ARID1A Missense_Mutation p.S1312Y 0.19 unknown(0) TCGA-ZF-A9RF-01 1 27101089 27101089 C G ARID1A Missense_Mutation p.F1457L 0.16 unknown(0) TCGA-ZF-A9RF-01 1 27102186 27102186 C G ARID1A Missense_Mutation p.F1704L 0.20 possibly_damaging(0.899) TCGA-ZF-A9RF-01 1 31189069 31189069 G C MATN1 Missense_Mutation p.I298M 0.22 deleterious(0.04) probably_damaging(0.991) TCGA-ZF-A9RF-01 1 45508984 45508984 G A ZSWIM5 Nonsense_Mutation p.R506* 0.17 TCGA-ZF-A9RF-01 1 62327290 62327290 C T INADL Missense_Mutation p.S797L 0.34 tolerated(0.18) benign(0.009) TCGA-ZF-A9RF-01 1 90048487 90048487 T A LRRC8B Missense_Mutation p.I93N 0.15 tolerated(0.1) probably_damaging(0.996) TCGA-ZF-A9RF-01 1 94342807 94342807 C G DNTTIP2 Missense_Mutation p.Q228H 0.18 tolerated(0.12) benign(0.005) TCGA-ZF-A9RF-01 1 9794120 9794120 G A CLSTN1 Missense_Mutation p.H731Y 0.22 deleterious(0.02) benign(0.001) TCGA-ZF-A9RF-01 20 32664892 32664892 C T RALY Silent p.S239S 0.33 TCGA-ZF-A9RF-01 20 33575451 33575451 C T MYH7B Silent p.Y455Y 0.17 TCGA-ZF-A9RF-01 20 33872139 33872139 G A EIF6 Intron 0.33 TCGA-ZF-A9RF-01 20 34054808 34054808 G A CEP250 Silent p.L170L 0.27 TCGA-ZF-A9RF-01 20 3723036 3723036 G T HSPA12B Nonsense_Mutation p.E83* 0.33 TCGA-ZF-A9RF-01 20 43251677 43251677 C T ADA Missense_Mutation p.E217K 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-A9RF-01 20 43251678 43251678 C A ADA Silent p.G216G 0.15 TCGA-ZF-A9RF-01 20 44511689 44511689 C T ZSWIM1 Missense_Mutation p.P153L 0.48 tolerated(0.66) benign(0.001) TCGA-ZF-A9RF-01 20 47591343 47591343 C G ARFGEF2 Missense_Mutation p.S569C 0.16 deleterious(0.04) probably_damaging(0.94) TCGA-ZF-A9RF-01 20 47859158 47859158 C T DDX27 Missense_Mutation p.S746F 0.43 deleterious(0) possibly_damaging(0.838) TCGA-ZF-A9RF-01 20 47886634 47886634 C G ZNFX1 Missense_Mutation p.R572T 0.33 tolerated(0.51) benign(0.003) TCGA-ZF-A9RF-01 21 31588054 31588054 A G CLDN8 Missense_Mutation p.C64R 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 21 44524453 44524453 C T U2AF1 Missense_Mutation p.R35Q 0.45 deleterious(0) probably_damaging(0.955) TCGA-ZF-A9RF-01 21 45668950 45668950 C G DNMT3L Missense_Mutation p.Q318H 0.38 tolerated(1) benign(0.009) TCGA-ZF-A9RF-01 22 19808202 19808202 C T GNB1L Missense_Mutation p.R58K 0.40 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RF-01 22 26688590 26688590 G A SEZ6L Missense_Mutation p.E105K 0.69 tolerated_low_confidence(0.07) benign(0.427) TCGA-ZF-A9RF-01 2 133402872 133402872 G T GPR39 Missense_Mutation p.R352L 0.52 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RF-01 2 152132274 152132274 G A NMI Nonsense_Mutation p.Q149* 0.28 TCGA-ZF-A9RF-01 2 166848640 166848640 G C SCN1A Missense_Mutation p.I1715M 0.49 deleterious(0.02) probably_damaging(0.981) TCGA-ZF-A9RF-01 2 178769908 178769908 G A PDE11A Nonsense_Mutation p.Q360* 0.08 TCGA-ZF-A9RF-01 2 178990897 178990897 T G RBM45 Silent p.T473T 0.08 TCGA-ZF-A9RF-01 2 179448549 179448549 C G TTN Missense_Mutation p.S21787T 0.33 TCGA-ZF-A9RF-01 2 179582046 179582046 C A TTN Missense_Mutation p.S8472I 0.26 TCGA-ZF-A9RF-01 2 198950569 198950569 T C PLCL1 Silent p.P776P 0.48 TCGA-ZF-A9RF-01 2 220493975 220493975 G C SLC4A3 Missense_Mutation p.K109N 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-ZF-A9RF-01 2 238726013 238726013 C T RBM44 Nonsense_Mutation p.Q152* 0.69 TCGA-ZF-A9RF-01 2 242441050 242441050 T C STK25 Missense_Mutation p.Y35C 0.25 deleterious(0) probably_damaging(0.918) TCGA-ZF-A9RF-01 2 24509217 24509217 G A ITSN2 Missense_Mutation p.S576L 0.22 tolerated(0.27) unknown(0) TCGA-ZF-A9RF-01 2 25470548 25470548 C G DNMT3A Missense_Mutation p.R309P 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-ZF-A9RF-01 2 27800791 27800791 C G C2orf16 Missense_Mutation p.T451R 0.38 tolerated(0.15) benign(0.343) TCGA-ZF-A9RF-01 2 40392064 40392078 TCTGCAATGCGCCTC - SLC8A1 In_Frame_Del p.R696_E700del 0.10 TCGA-ZF-A9RF-01 2 47606937 47606937 G C EPCAM Missense_Mutation p.K229N 0.18 tolerated(1) benign(0.001) TCGA-ZF-A9RF-01 2 47672783 47672783 T C MSH2 Missense_Mutation p.L458S 0.43 deleterious(0.02) benign(0.098) TCGA-ZF-A9RF-01 2 71043923 71043923 G A CLEC4F Missense_Mutation p.T197M 0.19 deleterious(0.04) benign(0.168) TCGA-ZF-A9RF-01 2 7154882 7154882 A G RNF144A Missense_Mutation p.K94E 0.24 tolerated(0.08) benign(0.102) TCGA-ZF-A9RF-01 2 75900572 75900572 C G GCFC2 Missense_Mutation p.K629N 0.16 deleterious(0) possibly_damaging(0.82) TCGA-ZF-A9RF-01 2 90139528 90139528 T C IGKV1D-16 Missense_Mutation p.L100P 0.61 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9RF-01 3 108076794 108076794 G T HHLA2 Missense_Mutation p.M263I 0.19 tolerated(0.42) benign(0.001) TCGA-ZF-A9RF-01 3 10979948 10979948 T A SLC6A11 Missense_Mutation p.L587M 0.12 tolerated(0.11) benign(0.039) TCGA-ZF-A9RF-01 3 10980081 10980081 A G SLC6A11 Missense_Mutation p.H631R 0.42 deleterious_low_confidence(0.02) benign(0.001) TCGA-ZF-A9RF-01 3 113098266 113098266 T A WDR52 Nonsense_Mutation p.K729* 0.15 TCGA-ZF-A9RF-01 3 113098267 113098267 C T WDR52 Silent p.E728E 0.14 TCGA-ZF-A9RF-01 3 124453937 124453937 C G UMPS Intron 0.22 TCGA-ZF-A9RF-01 3 149238715 149238715 G C WWTR1 Missense_Mutation p.F360L 0.17 tolerated(0.23) probably_damaging(0.978) TCGA-ZF-A9RF-01 3 15683562 15683562 G T BTD Nonsense_Mutation p.E153* 0.46 TCGA-ZF-A9RF-01 3 186505012 186505012 A G EIF4A2 Missense_Mutation p.T290A 0.56 tolerated(0.2) benign(0.015) TCGA-ZF-A9RF-01 3 196434703 196434703 C G CEP19 Missense_Mutation p.E75Q 0.60 tolerated(0.22) benign(0.02) TCGA-ZF-A9RF-01 3 33194476 33194476 C A SUSD5 Missense_Mutation p.G550C 0.12 deleterious(0) possibly_damaging(0.838) TCGA-ZF-A9RF-01 3 36587764 36587764 G A STAC Missense_Mutation p.V398I 0.14 tolerated(0.22) benign(0.015) TCGA-ZF-A9RF-01 3 38167058 38167058 C G ACAA1 Missense_Mutation p.K399N 0.14 deleterious(0.05) benign(0.029) TCGA-ZF-A9RF-01 3 42680096 42680096 C T NKTR Missense_Mutation p.S967L 0.18 tolerated_low_confidence(0.3) benign(0.422) TCGA-ZF-A9RF-01 3 48422240 48422240 C A FBXW12 Missense_Mutation p.L275M 0.48 tolerated(0.06) possibly_damaging(0.543) TCGA-ZF-A9RF-01 3 50114444 50114444 G A RBM6 Missense_Mutation p.E1084K 0.27 deleterious(0.02) benign(0.194) TCGA-ZF-A9RF-01 3 50252876 50252876 T A SLC38A3 RNA 0.15 TCGA-ZF-A9RF-01 3 52514222 52514222 C T NISCH Missense_Mutation p.S480L 0.10 deleterious(0.01) benign(0.003) TCGA-ZF-A9RF-01 4 113351678 113351678 G A ALPK1 Silent p.L325L 0.81 TCGA-ZF-A9RF-01 4 1164298 1164298 G A SPON2 Missense_Mutation p.P235S 0.16 deleterious(0.01) probably_damaging(0.914) TCGA-ZF-A9RF-01 4 13605472 13605472 C G BOD1L1 Missense_Mutation p.D1018H 0.36 probably_damaging(0.973) TCGA-ZF-A9RF-01 4 171009587 171009587 C G AADAT Missense_Mutation p.E66Q 0.30 tolerated(0.32) benign(0.006) TCGA-ZF-A9RF-01 4 17528627 17528627 G C CLRN2 Silent p.A207A 0.25 TCGA-ZF-A9RF-01 4 17609135 17609135 C G LAP3 Missense_Mutation p.L495V 0.33 deleterious(0.03) probably_damaging(0.968) TCGA-ZF-A9RF-01 4 183245371 183245371 G A TENM3 Silent p.L66L 0.34 TCGA-ZF-A9RF-01 4 48069526 48069526 T C TXK 3'UTR 0.59 TCGA-ZF-A9RF-01 4 6303043 6303043 C G WFS1 Silent p.L507L 0.24 TCGA-ZF-A9RF-01 4 652789 652789 G A PDE6B Missense_Mutation p.E484K 0.17 deleterious(0.01) possibly_damaging(0.638) TCGA-ZF-A9RF-01 4 74019729 74019729 G A ANKRD17 Missense_Mutation p.H368Y 0.34 probably_damaging(0.996) TCGA-ZF-A9RF-01 4 76703933 76703933 G A USO1 Missense_Mutation p.M261I 0.47 tolerated(0.16) benign(0.032) TCGA-ZF-A9RF-01 4 77324400 77324400 G A CCDC158 5'UTR 0.38 TCGA-ZF-A9RF-01 4 83891582 83891582 C G LIN54 Missense_Mutation p.K283N 0.40 deleterious(0.01) possibly_damaging(0.507) TCGA-ZF-A9RF-01 5 137735648 137735648 G A KDM3B Missense_Mutation p.G1049E 0.18 deleterious(0) possibly_damaging(0.889) TCGA-ZF-A9RF-01 5 140263626 140263626 G T PCDHA13 Silent p.V591V 0.15 TCGA-ZF-A9RF-01 5 140725566 140725566 G A PCDHGA3 Missense_Mutation p.A656T 0.47 deleterious_low_confidence(0.03) possibly_damaging(0.61) TCGA-ZF-A9RF-01 5 140735312 140735312 T G PCDHGA4 Missense_Mutation p.V182G 0.10 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-ZF-A9RF-01 5 141336216 141336216 T C PCDH12 Missense_Mutation p.R401G 0.29 deleterious(0) possibly_damaging(0.848) TCGA-ZF-A9RF-01 5 145719367 145719367 C A POU4F3 Missense_Mutation p.T126K 0.17 tolerated(0.15) benign(0.013) TCGA-ZF-A9RF-01 5 15936606 15936606 A G FBXL7 Missense_Mutation p.K263E 0.33 tolerated(0.78) benign(0.017) TCGA-ZF-A9RF-01 5 178392947 178392947 T A ZNF454 Missense_Mutation p.H514Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RF-01 5 19721463 19721463 A G CDH18 Silent p.P212P 0.12 TCGA-ZF-A9RF-01 5 37331810 37331810 C T NUP155 Missense_Mutation p.E536K 0.28 tolerated(0.33) benign(0.109) TCGA-ZF-A9RF-01 5 41149424 41149424 C G C6 Missense_Mutation p.E848Q 0.29 tolerated(0.2) probably_damaging(0.959) TCGA-ZF-A9RF-01 5 54603733 54603733 G C SKIV2L2 5'UTR 0.35 TCGA-ZF-A9RF-01 5 64070590 64070611 AATTTTATCCAACTTTGTTTGG - CWC27 Frame_Shift_Del p.N39Kfs*17 0.10 TCGA-ZF-A9RF-01 5 74981251 74981251 T C POC5 Silent p.E396E 0.19 TCGA-ZF-A9RF-01 5 76355520 76355520 G A AGGF1 Missense_Mutation p.G599E 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-A9RF-01 5 79768642 79768642 C T ZFYVE16 Nonsense_Mutation p.Q1363* 0.14 TCGA-ZF-A9RF-01 5 80409739 80409739 G T RASGRF2 Missense_Mutation p.A824S 0.13 tolerated_low_confidence(1) benign(0.014) TCGA-ZF-A9RF-01 6 117710844 117710844 G A ROS1 Silent p.V476V 0.49 TCGA-ZF-A9RF-01 6 131927674 131927674 T C MED23 Missense_Mutation p.N438D 0.39 tolerated(0.63) benign(0.044) TCGA-ZF-A9RF-01 6 132789599 132789599 T C STX7 Missense_Mutation p.I185V 0.13 tolerated(1) benign(0.24) TCGA-ZF-A9RF-01 6 135515530 135515530 C T MYB Nonsense_Mutation p.R294* 0.26 TCGA-ZF-A9RF-01 6 143081724 143081724 C T HIVEP2 Missense_Mutation p.E1901K 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-ZF-A9RF-01 6 152653022 152653041 AGATCTGAAAATACATGGAA - SYNE1 Splice_Site p.X4265_splice 0.11 TCGA-ZF-A9RF-01 6 159650940 159650940 T C FNDC1 Missense_Mutation p.L425P 0.43 deleterious(0) unknown(0) TCGA-ZF-A9RF-01 6 161016488 161016488 A T LPA Missense_Mutation p.W1123R 0.16 tolerated(0.13) probably_damaging(0.995) TCGA-ZF-A9RF-01 6 16306631 16306631 G C ATXN1 Missense_Mutation p.L793V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9RF-01 6 18171674 18171674 T G KDM1B Silent p.T166T 0.07 TCGA-ZF-A9RF-01 6 18171689 18171689 G T KDM1B Missense_Mutation p.M171I 0.07 tolerated(0.2) benign(0.285) TCGA-ZF-A9RF-01 6 26393253 26393253 C T BTN2A2 3'UTR 0.12 TCGA-ZF-A9RF-01 6 29798171 29798171 C A HLA-G 3'UTR 0.13 TCGA-ZF-A9RF-01 6 30558598 30558598 A T ABCF1 3'UTR 0.60 TCGA-ZF-A9RF-01 6 32064745 32064745 G T TNXB Nonsense_Mutation p.C295* 0.34 TCGA-ZF-A9RF-01 6 32906533 32906533 G A HLA-DMB Missense_Mutation p.R89C 0.19 deleterious(0) probably_damaging(0.986) TCGA-ZF-A9RF-01 6 42658809 42658809 G A UBR2 Silent p.K1722K 0.38 TCGA-ZF-A9RF-01 6 488986 488986 C A EXOC2 Missense_Mutation p.D892Y 0.66 deleterious(0) benign(0.328) TCGA-ZF-A9RF-01 6 56472872 56472872 C G DST Intron 0.22 TCGA-ZF-A9RF-01 6 63991080 63991080 C A LGSN Missense_Mutation p.V126L 0.22 tolerated(1) benign(0.001) TCGA-ZF-A9RF-01 6 72596718 72596718 G T RIMS1 5'Flank 0.31 TCGA-ZF-A9RF-01 6 76564872 76564872 G C MYO6 Missense_Mutation p.K365N 0.23 tolerated(0.36) unknown(0) TCGA-ZF-A9RF-01 7 102038121 102038121 C G PRKRIP1 Missense_Mutation p.P61A 0.61 deleterious(0.02) possibly_damaging(0.531) TCGA-ZF-A9RF-01 7 104844169 104844169 C T SRPK2 Silent p.P45P 0.65 TCGA-ZF-A9RF-01 7 131878850 131878850 C A PLXNA4 Missense_Mutation p.A943S 0.22 tolerated(0.05) possibly_damaging(0.832) TCGA-ZF-A9RF-01 7 134849212 134849212 C T TMEM140 Missense_Mutation p.R7W 0.67 tolerated(0.13) benign(0.014) TCGA-ZF-A9RF-01 7 140373325 140373325 G A ADCK2 Silent p.L65L 0.22 TCGA-ZF-A9RF-01 7 151711863 151711863 G A GALNTL5 Nonsense_Mutation p.W387* 0.16 TCGA-ZF-A9RF-01 7 29535631 29535631 G T CHN2 Missense_Mutation p.A240S 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-ZF-A9RF-01 7 38247055 38247055 C T STARD3NL 5'UTR 0.33 TCGA-ZF-A9RF-01 7 95820548 95820549 - CC SLC25A13 Frame_Shift_Ins p.T210Vfs*41 0.10 TCGA-ZF-A9RF-01 8 101721698 101721712 CTGCCATGAAGTAAC - PABPC1 In_Frame_Del p.G407_A411del 0.24 TCGA-ZF-A9RF-01 8 107719292 107719292 A G OXR1 Missense_Mutation p.K516E 0.05 tolerated(0.08) benign(0.102) TCGA-ZF-A9RF-01 8 124267727 124267727 C G ZHX1 Missense_Mutation p.D154H 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-ZF-A9RF-01 8 125464390 125464390 C G TRMT12 Missense_Mutation p.Q408E 0.58 tolerated(1) benign(0.001) TCGA-ZF-A9RF-01 8 139609162 139609162 C A COL22A1 Missense_Mutation p.G1473W 0.17 unknown(0) TCGA-ZF-A9RF-01 8 143570758 143570758 C T BAI1 Silent p.L864L 0.49 TCGA-ZF-A9RF-01 8 144804292 144804292 C T MAPK15 Silent p.F502F 0.09 TCGA-ZF-A9RF-01 8 33370133 33370133 C T TTI2 5'UTR 0.23 TCGA-ZF-A9RF-01 8 39644567 39644567 C A ADAM2 Nonsense_Mutation p.E273* 0.28 TCGA-ZF-A9RF-01 9 107367090 107367090 C T OR13C2 Silent p.L273L 0.24 TCGA-ZF-A9RF-01 9 113189946 113189946 G A SVEP1 Missense_Mutation p.P1967L 0.56 probably_damaging(0.948) TCGA-ZF-A9RF-01 9 131482233 131482233 C T PKN3 Silent p.I771I 0.54 TCGA-ZF-A9RF-01 9 139929186 139929186 C T C9orf139 Missense_Mutation p.L85F 0.30 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-ZF-A9RF-01 9 140907667 140907667 C T CACNA1B Silent p.A749A 0.38 TCGA-ZF-A9RF-01 9 27190538 27190538 C A TEK Missense_Mutation p.P447T 0.24 deleterious(0) probably_damaging(0.967) TCGA-ZF-A9RF-01 9 32634533 32634533 T C TAF1L Missense_Mutation p.K349E 0.28 tolerated(0.88) benign(0.103) TCGA-ZF-A9RF-01 9 34501151 34501151 G A DNAI1 Silent p.R345R 0.24 TCGA-ZF-A9RF-01 9 34611039 34611039 G A RPP25L Silent p.T85T 0.33 TCGA-ZF-A9RF-01 9 73213434 73213434 G T TRPM3 Silent p.V971V 0.21 TCGA-ZF-A9RF-01 9 74971863 74971863 C A ZFAND5 Missense_Mutation p.K159N 0.10 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9RF-01 9 77431673 77431673 G A TRPM6 Missense_Mutation p.S407L 0.25 deleterious(0) possibly_damaging(0.682) TCGA-ZF-A9RF-01 9 8633388 8633388 G A PTPRD Missense_Mutation p.A94V 0.27 tolerated(0.09) probably_damaging(0.978) TCGA-ZF-A9RF-01 9 99284829 99284829 C A CDC14B Missense_Mutation p.L434F 0.42 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RF-01 X 100402773 100402773 C T CENPI Silent p.A616A 0.47 TCGA-ZF-A9RF-01 X 107979220 107979220 G A IRS4 Missense_Mutation p.R119W 0.09 deleterious(0) probably_damaging(0.981) TCGA-ZF-A9RF-01 X 12840936 12840936 A T PRPS2 3'UTR 0.50 TCGA-ZF-A9RF-01 X 151128113 151128113 T G GABRE Intron 0.06 TCGA-ZF-A9RF-01 X 153133364 153133364 C T L1CAM Silent p.G610G 0.56 TCGA-ZF-A9RF-01 X 26158093 26158093 C T MAGEB18 Missense_Mutation p.R331C 0.58 tolerated(0.17) possibly_damaging(0.549) TCGA-ZF-A9RF-01 X 32717339 32717339 G A DMD Nonsense_Mutation p.Q241* 0.60 TCGA-ZF-A9RF-01 X 52682477 52682477 G C SSX7 Missense_Mutation p.Q16E 0.65 deleterious(0) probably_damaging(0.989) TCGA-ZF-A9RG-01 10 102269090 102269090 C G SEC31B Missense_Mutation p.D128H 0.10 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RG-01 10 123847425 123847425 C T TACC2 Missense_Mutation p.H1804Y 0.21 benign(0.05) TCGA-ZF-A9RG-01 10 129845842 129845842 G A PTPRE Intron 0.29 TCGA-ZF-A9RG-01 10 135184203 135184203 C T ECHS1 Silent p.L49L 0.20 TCGA-ZF-A9RG-01 10 27497271 27497271 G A ACBD5 Silent p.L436L 0.16 TCGA-ZF-A9RG-01 10 61868793 61868793 C - ANK3 Frame_Shift_Del p.V990Wfs*8 0.09 TCGA-ZF-A9RG-01 10 95111296 95111296 G C MYOF Missense_Mutation p.F1232L 0.30 tolerated(0.06) benign(0.002) TCGA-ZF-A9RG-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.27 TCGA-ZF-A9RG-01 10 96609733 96609733 C A CYP2C19 Missense_Mutation p.N403K 0.09 deleterious(0.04) benign(0.415) TCGA-ZF-A9RG-01 11 101786074 101786074 C T KIAA1377 Missense_Mutation p.S20L 0.30 deleterious_low_confidence(0.02) benign(0.322) TCGA-ZF-A9RG-01 11 105950307 105950307 G A AASDHPPT Silent p.S99S 0.26 TCGA-ZF-A9RG-01 11 105962117 105962117 A C AASDHPPT Silent p.L202L 0.13 TCGA-ZF-A9RG-01 11 110035681 110035681 C G ZC3H12C Missense_Mutation p.S624C 0.14 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RG-01 11 111784274 111784274 G A HSPB2 Silent p.R68R 0.09 TCGA-ZF-A9RG-01 11 116797980 116797980 C A SIK3 Missense_Mutation p.A133S 0.06 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RG-01 11 134120220 134120220 G C THYN1 Silent p.L80L 0.11 TCGA-ZF-A9RG-01 11 36293257 36293257 G C COMMD9 3'Flank 0.29 TCGA-ZF-A9RG-01 11 47827865 47827865 C T NUP160 Splice_Site p.X816_splice 0.14 TCGA-ZF-A9RG-01 11 57575892 57575892 C T CTNND1 Nonsense_Mutation p.Q708* 0.19 TCGA-ZF-A9RG-01 11 58275518 58275518 G T OR5B21 Missense_Mutation p.L21I 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.732) TCGA-ZF-A9RG-01 11 62293819 62293819 C T AHNAK Silent p.L2690L 0.24 TCGA-ZF-A9RG-01 11 64950958 64950958 C G CAPN1 Silent p.L117L 0.16 TCGA-ZF-A9RG-01 11 67172885 67172885 C T TBC1D10C Missense_Mutation p.R90W 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 11 67957455 67957455 G A SUV420H1 Missense_Mutation p.S30L 0.23 deleterious(0) benign(0.24) TCGA-ZF-A9RG-01 11 7021225 7021225 G C ZNF214 Missense_Mutation p.F563L 0.22 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RG-01 11 73610216 73610216 G A PAAF1 Missense_Mutation p.R103K 0.17 tolerated(0.31) benign(0.011) TCGA-ZF-A9RG-01 11 77301496 77301496 C T AQP11 Silent p.F153F 0.36 TCGA-ZF-A9RG-01 11 85396147 85396147 C T CCDC89 Missense_Mutation p.E343K 0.22 tolerated(0.1) possibly_damaging(0.461) TCGA-ZF-A9RG-01 11 92534481 92534481 G A FAT3 Missense_Mutation p.D2768N 0.38 benign(0.038) TCGA-ZF-A9RG-01 11 93455128 93455128 A G KIAA1731 Silent p.T1953T 0.10 TCGA-ZF-A9RG-01 11 94301962 94301962 A G PIWIL4 Missense_Mutation p.I52V 0.08 tolerated(0.47) benign(0.004) TCGA-ZF-A9RG-01 11 9715828 9715828 G A SWAP70 Missense_Mutation p.E79K 0.18 deleterious(0) benign(0.11) TCGA-ZF-A9RG-01 12 103306626 103306626 C T PAH Silent p.L37L 0.23 TCGA-ZF-A9RG-01 12 113346449 113346449 G A OAS1 Missense_Mutation p.E97K 0.12 tolerated(0.1) benign(0.41) TCGA-ZF-A9RG-01 12 121454196 121454196 C T C12orf43 Missense_Mutation p.E28K 0.13 deleterious(0.03) benign(0.017) TCGA-ZF-A9RG-01 12 131438988 131438988 G A GPR133 5'UTR 0.10 TCGA-ZF-A9RG-01 12 18650573 18650573 G T PIK3C2G Missense_Mutation p.Q928H 0.12 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 12 22208204 22208204 G C CMAS Missense_Mutation p.E128Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RG-01 12 23887621 23887621 G T SOX5 Silent p.I269I 0.05 TCGA-ZF-A9RG-01 12 46316822 46316822 G A SCAF11 Missense_Mutation p.S1341L 0.18 deleterious(0.01) benign(0.158) TCGA-ZF-A9RG-01 12 48499371 48499371 C T PFKM 5'Flank 0.26 TCGA-ZF-A9RG-01 12 51512554 51512554 C T TFCP2 Missense_Mutation p.D42N 0.23 deleterious(0.05) possibly_damaging(0.745) TCGA-ZF-A9RG-01 12 51847342 51847342 G C SLC4A8 Missense_Mutation p.D145H 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 12 54675244 54675244 G A HNRNPA1 Silent p.L30L 0.24 TCGA-ZF-A9RG-01 12 56630264 56630272 CAGGCAGCT - SLC39A5 In_Frame_Del p.Q344_A346del 0.28 TCGA-ZF-A9RG-01 12 56721411 56721411 G A PAN2 Missense_Mutation p.S219F 0.07 deleterious(0.01) possibly_damaging(0.736) TCGA-ZF-A9RG-01 12 57036459 57036459 C G ATP5B Missense_Mutation p.E317Q 0.23 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-ZF-A9RG-01 12 57037255 57037255 C A ATP5B Nonsense_Mutation p.E242* 0.16 TCGA-ZF-A9RG-01 12 65461483 65461483 C T WIF1 Missense_Mutation p.C209Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 12 65632588 65632588 T C LEMD3 Missense_Mutation p.C639R 0.15 tolerated(0.23) possibly_damaging(0.803) TCGA-ZF-A9RG-01 12 7053240 7053240 G C C12orf57 5'UTR 0.14 TCGA-ZF-A9RG-01 12 72091096 72091096 G A TMEM19 Missense_Mutation p.G140E 0.25 deleterious(0) benign(0.036) TCGA-ZF-A9RG-01 13 113678963 113678963 C A MCF2L Silent p.R57R 0.14 TCGA-ZF-A9RG-01 13 19747925 19747925 G A TUBA3C 3'UTR 0.21 TCGA-ZF-A9RG-01 13 25000724 25000724 C G PARP4 Missense_Mutation p.R1620T 0.16 deleterious(0.01) benign(0.118) TCGA-ZF-A9RG-01 14 100344863 100344863 G A EML1 Missense_Mutation p.G161E 0.18 tolerated(0.59) possibly_damaging(0.891) TCGA-ZF-A9RG-01 14 21993557 21993557 G A SALL2 Missense_Mutation p.S102F 0.15 deleterious(0) benign(0.229) TCGA-ZF-A9RG-01 14 22237207 22237207 A G TRAV6 Missense_Mutation p.E95G 0.14 tolerated(0.05) probably_damaging(0.93) TCGA-ZF-A9RG-01 14 23870046 23870046 G A MYH6 Silent p.L428L 0.17 TCGA-ZF-A9RG-01 14 24523498 24523498 C T LRRC16B Silent p.L78L 0.12 TCGA-ZF-A9RG-01 14 38679676 38679676 G A SSTR1 Missense_Mutation p.R361H 0.27 tolerated(0.09) probably_damaging(0.964) TCGA-ZF-A9RG-01 14 51290011 51290011 G A NIN Intron 0.23 TCGA-ZF-A9RG-01 14 57960354 57960354 G A C14orf105 Missense_Mutation p.S27L 0.18 tolerated(0.15) benign(0.029) TCGA-ZF-A9RG-01 14 61113247 61113247 G C SIX1 Silent p.L203L 0.17 TCGA-ZF-A9RG-01 14 74404787 74404787 C T FAM161B Missense_Mutation p.D540N 0.20 tolerated(0.3) benign(0.008) TCGA-ZF-A9RG-01 14 92076984 92076984 G C CATSPERB Missense_Mutation p.S813C 0.21 deleterious(0) probably_damaging(0.939) TCGA-ZF-A9RG-01 14 94933616 94933616 C T SERPINA9 Silent p.E262E 0.14 TCGA-ZF-A9RG-01 15 101827177 101827177 C T SNRPA1 Missense_Mutation p.R132K 0.12 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 15 25940240 25940240 G T ATP10A Silent p.G938G 0.25 TCGA-ZF-A9RG-01 15 45455843 45455843 C T DUOX1 Silent p.I1454I 0.21 TCGA-ZF-A9RG-01 15 63009810 63009810 G A TLN2 Silent p.Q933Q 0.27 TCGA-ZF-A9RG-01 15 64050523 64050523 C T HERC1 Missense_Mutation p.D358N 0.16 benign(0.004) TCGA-ZF-A9RG-01 15 64791901 64791901 A C ZNF609 Missense_Mutation p.S95R 0.26 deleterious(0.01) possibly_damaging(0.452) TCGA-ZF-A9RG-01 15 66794206 66794206 C T RPL4 Missense_Mutation p.D156N 0.10 tolerated(0.15) possibly_damaging(0.631) TCGA-ZF-A9RG-01 15 67664936 67664936 G A IQCH Missense_Mutation p.R414Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 15 67692454 67692454 G A IQCH Missense_Mutation p.M636I 0.19 tolerated(0.12) benign(0.014) TCGA-ZF-A9RG-01 15 86189082 86189082 G A AKAP13 Missense_Mutation p.R1424K 0.17 tolerated(0.38) benign(0.295) TCGA-ZF-A9RG-01 16 18859157 18859157 T C SMG1 Missense_Mutation p.N1941S 0.18 tolerated(0.13) possibly_damaging(0.829) TCGA-ZF-A9RG-01 16 20986704 20986704 G A DNAH3 Nonsense_Mutation p.Q2704* 0.14 TCGA-ZF-A9RG-01 16 21848691 21848691 G C NPIPB4 Silent p.L339L 0.16 TCGA-ZF-A9RG-01 16 25180478 25180478 C T LCMT1 Missense_Mutation p.R246W 0.19 deleterious(0.04) benign(0.019) TCGA-ZF-A9RG-01 16 28117727 28117727 C T XPO6 Silent p.Q863Q 0.18 TCGA-ZF-A9RG-01 16 29086403 29086403 C T RRN3P2 RNA 0.44 TCGA-ZF-A9RG-01 16 3063894 3063894 C T CLDN9 Silent p.G177G 0.40 TCGA-ZF-A9RG-01 16 3065984 3065984 C G CLDN6 Silent p.L13L 0.27 TCGA-ZF-A9RG-01 16 3831263 3831263 G A CREBBP Nonsense_Mutation p.Q540* 0.28 TCGA-ZF-A9RG-01 16 615070 615070 G A C16orf11 Silent p.L493L 0.29 TCGA-ZF-A9RG-01 16 67914796 67914796 G A EDC4 Missense_Mutation p.E812K 0.23 deleterious(0) probably_damaging(0.957) TCGA-ZF-A9RG-01 16 69362930 69362930 C T PDF Missense_Mutation p.D243N 0.16 deleterious(0) benign(0.055) TCGA-ZF-A9RG-01 16 70562829 70562829 C T SF3B3 Missense_Mutation p.R42C 0.15 deleterious(0) possibly_damaging(0.776) TCGA-ZF-A9RG-01 16 71065688 71065688 C A HYDIN Nonsense_Mutation p.E888* 0.27 TCGA-ZF-A9RG-01 17 10595195 10595195 C A SCO1 Missense_Mutation p.V217L 0.12 tolerated(0.05) benign(0.2) TCGA-ZF-A9RG-01 17 2234307 2234307 C T TSR1 Silent p.Q531Q 0.16 TCGA-ZF-A9RG-01 17 36894838 36894838 C G PCGF2 Missense_Mutation p.E146Q 0.08 tolerated(0.09) benign(0.004) TCGA-ZF-A9RG-01 17 37881132 37881132 G C ERBB2 Missense_Mutation p.D821H 0.24 tolerated(0.53) benign(0.213) TCGA-ZF-A9RG-01 17 3838515 3838515 C T ATP2A3 Missense_Mutation p.E861K 0.29 tolerated(0.33) possibly_damaging(0.562) TCGA-ZF-A9RG-01 17 38641231 38641231 C T TNS4 Missense_Mutation p.M439I 0.22 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9RG-01 17 4046967 4046967 G T CYB5D2 5'UTR 0.21 TCGA-ZF-A9RG-01 17 40714723 40714723 C T COASY Missense_Mutation p.S57L 0.09 tolerated(0.11) benign(0.026) TCGA-ZF-A9RG-01 17 41244679 41244679 G C BRCA1 Missense_Mutation p.Q957E 0.13 deleterious(0.03) possibly_damaging(0.637) TCGA-ZF-A9RG-01 17 44626463 44626463 A G LRRC37A2 Missense_Mutation p.K1320E 0.11 tolerated(0.24) benign(0.048) TCGA-ZF-A9RG-01 17 48586058 48586058 C T MYCBPAP Missense_Mutation p.S51F 0.15 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RG-01 17 49071168 49071168 G A SPAG9 Silent p.F785F 0.16 TCGA-ZF-A9RG-01 17 5322721 5322721 G A NUP88 Missense_Mutation p.R84W 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9RG-01 17 63049731 63049731 G A GNA13 Silent p.A133A 0.09 TCGA-ZF-A9RG-01 17 694988 694988 G A RNMTL1 Missense_Mutation p.M314I 0.21 tolerated(0.19) benign(0.001) TCGA-ZF-A9RG-01 17 73485668 73485668 C T KIAA0195 Silent p.L293L 0.12 TCGA-ZF-A9RG-01 17 74729619 74729619 G A METTL23 Missense_Mutation p.E142K 0.21 deleterious(0) possibly_damaging(0.794) TCGA-ZF-A9RG-01 17 7578268 7578268 A T TP53 Missense_Mutation p.L194H 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 17 78519457 78519457 C T RPTOR Missense_Mutation p.L10F 0.15 tolerated_low_confidence(0.25) benign(0.001) TCGA-ZF-A9RG-01 17 78519460 78519460 C A RPTOR Missense_Mutation p.L11M 0.16 tolerated(0.09) benign(0.265) TCGA-ZF-A9RG-01 17 79870244 79870244 G C SIRT7 3'UTR 0.09 TCGA-ZF-A9RG-01 17 80196829 80196829 C T SLC16A3 Missense_Mutation p.H459Y 0.11 deleterious(0.04) benign(0.087) TCGA-ZF-A9RG-01 18 39595442 39595442 C T PIK3C3 Missense_Mutation p.S443F 0.15 deleterious(0.02) benign(0.151) TCGA-ZF-A9RG-01 18 5478390 5478390 G A EPB41L3 Silent p.L77L 0.11 TCGA-ZF-A9RG-01 19 10692495 10692495 G A AP1M2 Silent p.I109I 0.27 TCGA-ZF-A9RG-01 19 17339731 17339731 C T OCEL1 Silent p.F264F 0.16 TCGA-ZF-A9RG-01 19 37734533 37734533 C T ZNF383 Silent p.L465L 0.11 TCGA-ZF-A9RG-01 19 38028237 38028237 C G ZNF793 Missense_Mutation p.P226R 0.20 deleterious(0) probably_damaging(0.995) TCGA-ZF-A9RG-01 19 41235171 41235171 C G ITPKC Missense_Mutation p.S440R 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-A9RG-01 19 43967856 43967856 C A LYPD3 Missense_Mutation p.G93C 0.12 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RG-01 19 45872380 45872380 G A ERCC2 Missense_Mutation p.S44L 0.20 deleterious(0) possibly_damaging(0.87) TCGA-ZF-A9RG-01 19 49652821 49652821 C T PPFIA3 Silent p.F1124F 0.21 TCGA-ZF-A9RG-01 19 54618737 54618737 C T TFPT 5'UTR 0.21 TCGA-ZF-A9RG-01 19 58016740 58016740 G T ZNF773 Missense_Mutation p.W78C 0.12 tolerated(0.18) benign(0) TCGA-ZF-A9RG-01 19 58199365 58199365 C G ZNF551 Silent p.L574L 0.22 TCGA-ZF-A9RG-01 19 6166014 6166014 C T ACSBG2 Silent p.L242L 0.21 TCGA-ZF-A9RG-01 19 6380394 6380394 C T GTF2F1 Silent p.L484L 0.21 TCGA-ZF-A9RG-01 19 677931 677931 C T FSTL3 Silent p.I81I 0.28 TCGA-ZF-A9RG-01 19 9088259 9088259 C T MUC16 Missense_Mutation p.E1186K 0.13 unknown(0) TCGA-ZF-A9RG-01 1 117638919 117638919 C T TTF2 Nonsense_Mutation p.Q1062* 0.22 TCGA-ZF-A9RG-01 1 150900269 150900269 C T SETDB1 Nonsense_Mutation p.Q27* 0.10 TCGA-ZF-A9RG-01 1 152975642 152975642 G T SPRR3 Missense_Mutation p.G49V 0.13 tolerated(0.09) probably_damaging(0.947) TCGA-ZF-A9RG-01 1 155292593 155292593 C T RUSC1 Silent p.L343L 0.22 TCGA-ZF-A9RG-01 1 155385707 155385707 C T ASH1L Missense_Mutation p.E1946K 0.14 deleterious_low_confidence(0.03) benign(0.108) TCGA-ZF-A9RG-01 1 158687162 158687162 C G OR6K3 Silent p.P248P 0.26 TCGA-ZF-A9RG-01 1 159410055 159410055 G A OR10J1 Silent p.T169T 0.11 TCGA-ZF-A9RG-01 1 16383425 16383425 G C CLCNKB 3'UTR 0.36 TCGA-ZF-A9RG-01 1 165386384 165386384 G C RXRG Missense_Mutation p.I172M 0.10 deleterious(0) possibly_damaging(0.522) TCGA-ZF-A9RG-01 1 170508626 170508626 G A GORAB Missense_Mutation p.E138K 0.10 tolerated(0.16) benign(0.009) TCGA-ZF-A9RG-01 1 201981084 201981084 G A ELF3 Splice_Site p.X55_splice 0.08 TCGA-ZF-A9RG-01 1 202123440 202123440 C T PTPN7 Silent p.G265G 0.21 TCGA-ZF-A9RG-01 1 203053814 203053814 C T MYOG Missense_Mutation p.E172K 0.44 deleterious(0.02) benign(0.014) TCGA-ZF-A9RG-01 1 204380099 204380099 G A PPP1R15B Silent p.I147I 0.05 TCGA-ZF-A9RG-01 1 204380339 204380339 G C PPP1R15B Silent p.L67L 0.10 TCGA-ZF-A9RG-01 1 204423848 204423848 C T PIK3C2B Missense_Mutation p.R672Q 0.09 tolerated(0.1) benign(0.028) TCGA-ZF-A9RG-01 1 205568336 205568336 C T MFSD4 Silent p.I482I 0.14 TCGA-ZF-A9RG-01 1 22030035 22030035 G C USP48 Missense_Mutation p.I864M 0.17 deleterious(0) possibly_damaging(0.784) TCGA-ZF-A9RG-01 1 229730829 229730829 C T TAF5L Missense_Mutation p.D329N 0.10 tolerated(0.16) benign(0.007) TCGA-ZF-A9RG-01 1 232568191 232568191 G A SIPA1L2 Missense_Mutation p.S1353L 0.30 tolerated(0.57) benign(0.029) TCGA-ZF-A9RG-01 1 236734738 236734738 C G HEATR1 Missense_Mutation p.L1287F 0.25 deleterious(0) probably_damaging(0.984) TCGA-ZF-A9RG-01 1 24121169 24121169 C T LYPLA2 Intron 0.11 TCGA-ZF-A9RG-01 1 2519970 2519970 C T FAM213B Intron 0.21 TCGA-ZF-A9RG-01 1 27219934 27219934 C T GPATCH3 Missense_Mutation p.D353N 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 1 37356576 37356576 C G GRIK3 Missense_Mutation p.L79F 0.07 deleterious(0.02) probably_damaging(1) TCGA-ZF-A9RG-01 1 38149000 38149000 G C C1orf109 Missense_Mutation p.L189V 0.20 tolerated(0.43) possibly_damaging(0.547) TCGA-ZF-A9RG-01 1 42880478 42880478 G C RIMKLA Missense_Mutation p.E337Q 0.33 tolerated_low_confidence(0.08) benign(0.192) TCGA-ZF-A9RG-01 1 44071008 44071008 A C PTPRF Missense_Mutation p.T1095P 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 1 44438235 44438235 G A DPH2 3'UTR 0.19 TCGA-ZF-A9RG-01 1 47610589 47610589 G A CYP4A22 Missense_Mutation p.G390E 0.12 deleterious(0.03) possibly_damaging(0.47) TCGA-ZF-A9RG-01 1 53986424 53986424 C T GLIS1 Missense_Mutation p.D362N 0.29 deleterious(0.04) benign(0.322) TCGA-ZF-A9RG-01 1 86960029 86960029 A G CLCA1 Missense_Mutation p.I614V 0.25 tolerated(1) benign(0.039) TCGA-ZF-A9RG-01 1 89579891 89579891 C T GBP2 Silent p.Q319Q 0.10 TCGA-ZF-A9RG-01 20 43386371 43386371 C T RIMS4 Missense_Mutation p.E132K 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-ZF-A9RG-01 20 50314000 50314000 G A ATP9A Missense_Mutation p.S153F 0.33 deleterious(0) probably_damaging(0.972) TCGA-ZF-A9RG-01 21 37623551 37623551 G C DOPEY2 Missense_Mutation p.R1697T 0.08 deleterious(0.01) benign(0.06) TCGA-ZF-A9RG-01 22 20458133 20458133 C T RIMBP3 Missense_Mutation p.E1057K 0.12 deleterious(0.01) possibly_damaging(0.892) TCGA-ZF-A9RG-01 22 25313651 25313651 G A SGSM1 Silent p.L1040L 0.16 TCGA-ZF-A9RG-01 22 36122361 36122361 G A APOL5 Silent p.L82L 0.13 TCGA-ZF-A9RG-01 22 38121328 38121328 C G TRIOBP Missense_Mutation p.S922C 0.07 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-ZF-A9RG-01 22 38121882 38121882 C T TRIOBP Nonsense_Mutation p.Q1107* 0.17 TCGA-ZF-A9RG-01 22 43625175 43625175 G A SCUBE1 Silent p.F329F 0.15 TCGA-ZF-A9RG-01 22 44602202 44602202 G A PARVG Missense_Mutation p.V298M 0.11 deleterious(0.04) probably_damaging(0.947) TCGA-ZF-A9RG-01 22 51154122 51154122 C G SHANK3 Missense_Mutation p.P780R 0.14 possibly_damaging(0.871) TCGA-ZF-A9RG-01 2 11741061 11741061 G C GREB1 Missense_Mutation p.Q823H 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RG-01 2 118758404 118758404 A G CCDC93 Missense_Mutation p.V119A 0.07 deleterious(0.02) possibly_damaging(0.85) TCGA-ZF-A9RG-01 2 131890540 131890540 G A PLEKHB2 Silent p.T133T 0.15 TCGA-ZF-A9RG-01 2 135965023 135965023 G A ZRANB3 Missense_Mutation p.S997L 0.12 deleterious(0.01) possibly_damaging(0.517) TCGA-ZF-A9RG-01 2 163693224 163693224 A T KCNH7 Missense_Mutation p.C44S 0.22 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 2 165971968 165971968 C T SCN3A Missense_Mutation p.E1171K 0.12 deleterious(0.02) possibly_damaging(0.81) TCGA-ZF-A9RG-01 2 172187201 172187201 G A METTL8 Missense_Mutation p.S243L 0.12 tolerated(0.11) benign(0.033) TCGA-ZF-A9RG-01 2 173901378 173901378 G A RAPGEF4 Silent p.G937G 0.08 TCGA-ZF-A9RG-01 2 179590656 179590656 T A TTN Missense_Mutation p.K6798M 0.13 TCGA-ZF-A9RG-01 2 197541388 197541388 G A CCDC150 Missense_Mutation p.G458D 0.11 tolerated(0.06) benign(0.36) TCGA-ZF-A9RG-01 2 204074025 204074025 G A NBEAL1 Missense_Mutation p.E2560K 0.09 tolerated(0.21) probably_damaging(0.998) TCGA-ZF-A9RG-01 2 214878727 214878727 G C SPAG16 Missense_Mutation p.E485Q 0.15 tolerated(0.5) benign(0.111) TCGA-ZF-A9RG-01 2 215661801 215661801 C G BARD1 Missense_Mutation p.E67Q 0.13 deleterious(0.01) probably_damaging(0.949) TCGA-ZF-A9RG-01 2 238671322 238671322 G A LRRFIP1 Silent p.E322E 0.18 TCGA-ZF-A9RG-01 2 241570154 241570154 G C GPR35 Missense_Mutation p.S293T 0.10 tolerated(0.1) possibly_damaging(0.469) TCGA-ZF-A9RG-01 2 26101081 26101081 T C ASXL2 Missense_Mutation p.K4R 0.05 tolerated(0.6) benign(0.263) TCGA-ZF-A9RG-01 2 27803987 27803987 C G C2orf16 Missense_Mutation p.I1516M 0.11 tolerated(0.11) unknown(0) TCGA-ZF-A9RG-01 2 29152518 29152518 A G WDR43 Missense_Mutation p.N460S 0.13 tolerated(0.1) benign(0.071) TCGA-ZF-A9RG-01 2 32640936 32640936 C G BIRC6 Silent p.L859L 0.14 TCGA-ZF-A9RG-01 2 44162006 44162006 G A LRPPRC Missense_Mutation p.S839F 0.45 deleterious(0.01) benign(0.137) TCGA-ZF-A9RG-01 2 58311247 58311247 A T VRK2 Nonsense_Mutation p.K54* 0.08 TCGA-ZF-A9RG-01 2 60688281 60688281 G A BCL11A Missense_Mutation p.S589L 0.39 tolerated(0.07) benign(0.177) TCGA-ZF-A9RG-01 2 62450252 62450252 C G B3GNT2 Silent p.L299L 0.07 TCGA-ZF-A9RG-01 2 62733174 62733174 C T TMEM17 Missense_Mutation p.E31K 0.21 tolerated(0.62) benign(0.008) TCGA-ZF-A9RG-01 2 86437695 86437695 C T MRPL35 Silent p.L157L 0.22 TCGA-ZF-A9RG-01 2 86693911 86693911 C T KDM3A Missense_Mutation p.S475L 0.18 tolerated(0.1) benign(0.002) TCGA-ZF-A9RG-01 2 97427280 97427280 C T CNNM4 Missense_Mutation p.L182F 0.14 tolerated(0.33) benign(0.033) TCGA-ZF-A9RG-01 2 97506645 97506645 T C ANKRD23 Missense_Mutation p.Q102R 0.14 tolerated(0.07) benign(0.065) TCGA-ZF-A9RG-01 2 99182131 99182131 G A INPP4A Missense_Mutation p.M732I 0.07 deleterious(0) probably_damaging(0.98) TCGA-ZF-A9RG-01 3 101573905 101573905 G A NFKBIZ Splice_Site p.X482_splice 0.30 TCGA-ZF-A9RG-01 3 108156459 108156459 G A MYH15 Missense_Mutation p.R1075W 0.11 deleterious(0) possibly_damaging(0.487) TCGA-ZF-A9RG-01 3 110852616 110852616 A G PVRL3 Missense_Mutation p.I402V 0.16 tolerated(0.34) benign(0.007) TCGA-ZF-A9RG-01 3 141272768 141272768 A C RASA2 Silent p.L199L 0.07 TCGA-ZF-A9RG-01 3 154042035 154042035 C T DHX36 Silent p.L57L 0.14 TCGA-ZF-A9RG-01 3 154042138 154042138 C G DHX36 Missense_Mutation p.G23A 0.18 tolerated_low_confidence(0.51) possibly_damaging(0.794) TCGA-ZF-A9RG-01 3 168838887 168838887 G A MECOM Silent p.L240L 0.31 TCGA-ZF-A9RG-01 3 170786725 170786725 C T TNIK Missense_Mutation p.R1204K 0.16 deleterious(0) probably_damaging(0.987) TCGA-ZF-A9RG-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.20 tolerated(0.06) possibly_damaging(0.801) TCGA-ZF-A9RG-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-ZF-A9RG-01 3 183643492 183643492 C T ABCC5 Missense_Mutation p.E1355K 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 3 183732067 183732067 G A ABCC5 Silent p.F38F 0.22 TCGA-ZF-A9RG-01 3 185209349 185209349 A G TMEM41A Silent p.H257H 0.11 TCGA-ZF-A9RG-01 3 192516176 192516176 C T MB21D2 Silent p.%3D 0.19 TCGA-ZF-A9RG-01 3 192994603 192994603 G A ATP13A5 Missense_Mutation p.T1111I 0.19 tolerated(0.38) benign(0.011) TCGA-ZF-A9RG-01 3 195102686 195102686 G A ACAP2 Silent p.F59F 0.29 TCGA-ZF-A9RG-01 3 196198909 196198909 G A RNF168 Silent p.F499F 0.25 TCGA-ZF-A9RG-01 3 20193903 20193903 C T KAT2B Silent p.V795V 0.27 TCGA-ZF-A9RG-01 3 50336717 50336717 C A NAT6 5'UTR 0.27 TCGA-ZF-A9RG-01 3 51661656 51661656 C T RAD54L2 Missense_Mutation p.S76L 0.38 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-ZF-A9RG-01 3 73432631 73432631 C T PDZRN3 Missense_Mutation p.R1029K 0.23 tolerated(0.06) probably_damaging(0.997) TCGA-ZF-A9RG-01 3 86115927 86115927 C T CADM2 Silent p.F436F 0.19 TCGA-ZF-A9RG-01 3 87017893 87017893 G T VGLL3 Missense_Mutation p.L262M 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 4 102816510 102816510 G A BANK1 Missense_Mutation p.E318K 0.06 tolerated(0.62) possibly_damaging(0.737) TCGA-ZF-A9RG-01 4 126371709 126371709 G T FAT4 Missense_Mutation p.V3180L 0.09 benign(0.012) TCGA-ZF-A9RG-01 4 129043145 129043145 C T LARP1B Silent p.D442D 0.14 TCGA-ZF-A9RG-01 4 155048 155048 A T ZNF718 RNA 0.10 TCGA-ZF-A9RG-01 4 1807889 1807889 A G FGFR3 Missense_Mutation p.K652E 0.50 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 4 22389227 22389227 G A GPR125 3'UTR 0.25 TCGA-ZF-A9RG-01 4 25157673 25157673 G A SEPSECS Missense_Mutation p.S178F 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 4 76582796 76582796 G T G3BP2 Missense_Mutation p.S99Y 0.07 deleterious(0) possibly_damaging(0.907) TCGA-ZF-A9RG-01 4 77818017 77818017 G A SOWAHB Missense_Mutation p.S329L 0.12 deleterious(0.01) benign(0.32) TCGA-ZF-A9RG-01 4 99982489 99982489 C G METAP1 3'UTR 0.17 TCGA-ZF-A9RG-01 5 102888061 102888061 C A NUDT12 Missense_Mutation p.V379F 0.06 deleterious(0.04) probably_damaging(0.99) TCGA-ZF-A9RG-01 5 112770104 112770104 C G TSSK1B Missense_Mutation p.D145H 0.13 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RG-01 5 118728866 118728866 C T TNFAIP8 Silent p.S129S 0.13 TCGA-ZF-A9RG-01 5 127485735 127485735 A G SLC12A2 Silent p.A684A 0.06 TCGA-ZF-A9RG-01 5 137321065 137321065 C T FAM13B Missense_Mutation p.D354N 0.15 tolerated(0.15) benign(0.002) TCGA-ZF-A9RG-01 5 13829755 13829755 G A DNAH5 Missense_Mutation p.S2103L 0.16 benign(0.005) TCGA-ZF-A9RG-01 5 140057555 140057555 C G HARS Missense_Mutation p.E190Q 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 5 140256399 140256399 G A PCDHA12 Missense_Mutation p.V448M 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.743) TCGA-ZF-A9RG-01 5 140797678 140797678 A G PCDHGB7 Silent p.L84L 0.19 TCGA-ZF-A9RG-01 5 14406742 14406742 C T TRIO Silent p.I1640I 0.15 TCGA-ZF-A9RG-01 5 6633847 6633847 G A SRD5A1 Missense_Mutation p.R53Q 0.43 deleterious(0.05) benign(0.241) TCGA-ZF-A9RG-01 5 66461183 66461183 C T MAST4 Missense_Mutation p.S2059F 0.09 benign(0.381) TCGA-ZF-A9RG-01 5 71493662 71493662 G A MAP1B Missense_Mutation p.E1494K 0.21 possibly_damaging(0.725) TCGA-ZF-A9RG-01 5 75896747 75896747 C T IQGAP2 Silent p.L394L 0.15 TCGA-ZF-A9RG-01 6 100010759 100010759 G A CCNC Missense_Mutation p.S33L 0.13 deleterious(0.01) benign(0.415) TCGA-ZF-A9RG-01 6 107372497 107372497 G T C6orf203 3'UTR 0.15 TCGA-ZF-A9RG-01 6 108985342 108985342 G A FOXO3 Missense_Mutation p.G436R 0.09 deleterious(0.02) possibly_damaging(0.905) TCGA-ZF-A9RG-01 6 112394097 112394097 C G TUBE1 Missense_Mutation p.D320H 0.18 deleterious(0) probably_damaging(0.989) TCGA-ZF-A9RG-01 6 117718260 117718260 C G ROS1 Missense_Mutation p.L199F 0.10 tolerated(0.4) benign(0.009) TCGA-ZF-A9RG-01 6 139564325 139564325 C T TXLNB Missense_Mutation p.E465K 0.14 deleterious(0.01) benign(0.038) TCGA-ZF-A9RG-01 6 154831272 154831272 G A CNKSR3 5'UTR 0.14 TCGA-ZF-A9RG-01 6 159183182 159183182 G C SYTL3 Missense_Mutation p.D497H 0.17 tolerated(0.07) probably_damaging(0.992) TCGA-ZF-A9RG-01 6 159184535 159184535 G A SYTL3 Missense_Mutation p.G573S 0.40 tolerated(0.26) benign(0.036) TCGA-ZF-A9RG-01 6 160237056 160237056 G A PNLDC1 Missense_Mutation p.E340K 0.07 tolerated(0.51) benign(0.006) TCGA-ZF-A9RG-01 6 168289964 168289964 G A MLLT4 Missense_Mutation p.E323K 0.25 deleterious(0) possibly_damaging(0.647) TCGA-ZF-A9RG-01 6 26157254 26157254 G C HIST1H1E Missense_Mutation p.K212N 0.13 deleterious(0) unknown(0) TCGA-ZF-A9RG-01 6 26444277 26444277 G T BTN3A3 Missense_Mutation p.A60S 0.06 deleterious(0.03) probably_damaging(0.962) TCGA-ZF-A9RG-01 6 32117452 32117452 G C PRRT1 Silent p.L202L 0.27 TCGA-ZF-A9RG-01 6 32164700 32164700 A G NOTCH4 Splice_Site p.X1734_splice 0.14 TCGA-ZF-A9RG-01 6 35745245 35745245 G A CLPSL2 Missense_Mutation p.D32N 0.25 tolerated(0.21) possibly_damaging(0.908) TCGA-ZF-A9RG-01 6 42222655 42222655 C A TRERF1 Nonsense_Mutation p.E864* 0.16 TCGA-ZF-A9RG-01 6 42946153 42946153 C T PEX6 Missense_Mutation p.E246K 0.27 tolerated(0.07) benign(0.05) TCGA-ZF-A9RG-01 6 55638880 55638880 G A BMP5 Missense_Mutation p.H332Y 0.13 tolerated(1) benign(0.002) TCGA-ZF-A9RG-01 7 100002662 100002662 G A ZCWPW1 Nonsense_Mutation p.Q409* 0.21 TCGA-ZF-A9RG-01 7 104742552 104742552 G A KMT2E Missense_Mutation p.E703K 0.21 deleterious_low_confidence(0.04) benign(0.292) TCGA-ZF-A9RG-01 7 104753155 104753155 C T KMT2E Missense_Mutation p.S1651F 0.20 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-ZF-A9RG-01 7 111846782 111846782 C A ZNF277 Missense_Mutation p.S4Y 0.33 deleterious_low_confidence(0.01) benign(0.037) TCGA-ZF-A9RG-01 7 135387595 135387595 C T SLC13A4 Missense_Mutation p.E210K 0.13 tolerated(0.7) benign(0.001) TCGA-ZF-A9RG-01 7 136700395 136700395 G A CHRM2 Silent p.Q261Q 0.30 TCGA-ZF-A9RG-01 7 23731102 23731102 G A FAM221A Missense_Mutation p.R175K 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9RG-01 7 47408940 47408940 C G TNS3 Missense_Mutation p.E435Q 0.13 deleterious(0.01) probably_damaging(0.946) TCGA-ZF-A9RG-01 7 50513580 50513580 G A FIGNL1 Missense_Mutation p.S469F 0.13 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RG-01 7 51096798 51096798 T A COBL Missense_Mutation p.R665S 0.05 tolerated(0.19) benign(0.03) TCGA-ZF-A9RG-01 7 6035197 6035197 A T PMS2 Missense_Mutation p.F291I 0.08 deleterious(0) possibly_damaging(0.769) TCGA-ZF-A9RG-01 7 64864592 64864592 C G ZNF92 Nonsense_Mutation p.S522* 0.12 TCGA-ZF-A9RG-01 7 74237248 74237248 G A GTF2IRD2 Missense_Mutation p.P149L 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZF-A9RG-01 7 87506068 87506068 G A DBF4 Silent p.R7R 0.18 TCGA-ZF-A9RG-01 7 87810920 87810920 G C ADAM22 Missense_Mutation p.G837R 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZF-A9RG-01 7 99017576 99017576 C T ATP5J2-PTCD1 3'UTR 0.13 TCGA-ZF-A9RG-01 7 99565820 99565820 G A AZGP1 Missense_Mutation p.R191W 0.06 deleterious(0) possibly_damaging(0.686) TCGA-ZF-A9RG-01 8 11162471 11162471 G A MTMR9 Missense_Mutation p.R180Q 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 8 124351680 124351680 C G ATAD2 Missense_Mutation p.E909Q 0.15 tolerated(0.45) benign(0.028) TCGA-ZF-A9RG-01 8 124812070 124812070 C G FAM91A1 Nonsense_Mutation p.S585* 0.22 TCGA-ZF-A9RG-01 8 125072431 125072431 C T FER1L6 Missense_Mutation p.S962F 0.18 tolerated(0.07) benign(0.027) TCGA-ZF-A9RG-01 8 141285796 141285796 C G TRAPPC9 Missense_Mutation p.E845Q 0.13 deleterious(0.01) probably_damaging(0.974) TCGA-ZF-A9RG-01 8 145746448 145746448 C T LRRC14 Silent p.F356F 0.21 TCGA-ZF-A9RG-01 8 17726465 17726465 C T FGL1 Missense_Mutation p.R184H 0.07 deleterious(0) probably_damaging(0.965) TCGA-ZF-A9RG-01 8 19192208 19192208 C G SH2D4A Missense_Mutation p.S118C 0.38 deleterious(0.03) benign(0.198) TCGA-ZF-A9RG-01 8 43046614 43046614 C G HGSNAT Intron 0.18 TCGA-ZF-A9RG-01 8 66516625 66516625 G A ARMC1 3'UTR 0.10 TCGA-ZF-A9RG-01 9 101777720 101777720 T G COL15A1 Missense_Mutation p.L459V 0.17 tolerated_low_confidence(0.3) benign(0.002) TCGA-ZF-A9RG-01 9 112151535 112151535 G A PTPN3 Missense_Mutation p.T744M 0.48 deleterious(0) probably_damaging(1) TCGA-ZF-A9RG-01 9 112778290 112778290 G A PALM2-AKAP2 Missense_Mutation p.E185K 0.39 tolerated(0.15) benign(0.223) TCGA-ZF-A9RG-01 9 116053819 116053819 C T PRPF4 Missense_Mutation p.S483F 0.53 tolerated(0.27) benign(0.025) TCGA-ZF-A9RG-01 9 123852642 123852642 C G CNTRL Missense_Mutation p.L103V 0.40 probably_damaging(0.998) TCGA-ZF-A9RG-01 9 128201227 128201227 C G MAPKAP1 Missense_Mutation p.R503T 0.55 deleterious(0) benign(0.309) TCGA-ZF-A9RG-01 9 133989974 133989974 G A AIF1L Missense_Mutation p.M83I 0.06 deleterious(0.04) benign(0.349) TCGA-ZF-A9RG-01 9 140267374 140267374 C G EXD3 Missense_Mutation p.E149Q 0.07 tolerated(0.35) possibly_damaging(0.761) TCGA-ZF-A9RG-01 9 21141636 21141636 C T IFNW1 5'UTR 0.44 TCGA-ZF-A9RG-01 9 6592150 6592150 G A GLDC Missense_Mutation p.S492L 0.41 tolerated(0.15) possibly_damaging(0.711) TCGA-ZF-A9RG-01 9 74305039 74305039 C G TMEM2 Missense_Mutation p.E1274Q 0.41 tolerated(0.27) benign(0.09) TCGA-ZF-A9RG-01 9 95772611 95772611 C T FGD3 Silent p.L307L 0.37 TCGA-ZF-A9RG-01 X 100170026 100170026 G A XKRX Silent p.T217T 0.08 TCGA-ZF-A9RG-01 X 106186370 106186370 G C MORC4 Missense_Mutation p.T584R 0.07 tolerated(0.11) benign(0.077) TCGA-ZF-A9RG-01 X 117576206 117576206 G T WDR44 Splice_Site p.X723_splice 0.09 TCGA-ZF-A9RG-01 X 123171472 123171480 AGGTAAGAT - STAG2 Splice_Site p.X129_splice 0.09 TCGA-ZF-A9RG-01 X 129759170 129759170 A T ENOX2 3'UTR 0.19 TCGA-ZF-A9RG-01 X 154176073 154176073 G A F8 Silent p.F671F 0.19 TCGA-ZF-A9RG-01 X 15610443 15610443 C G ACE2 Missense_Mutation p.L116F 0.22 deleterious(0.04) possibly_damaging(0.666) TCGA-ZF-A9RG-01 X 18234766 18234766 G C BEND2 Missense_Mutation p.S38C 0.22 deleterious_low_confidence(0.02) benign(0.237) TCGA-ZF-A9RG-01 X 24086096 24086096 G A EIF2S3 Missense_Mutation p.E295K 0.13 deleterious(0) possibly_damaging(0.69) TCGA-ZF-A9RG-01 X 2827914 2827914 C G ARSD Silent p.L414L 0.18 TCGA-ZF-A9RG-01 X 39922007 39922007 C T BCOR Missense_Mutation p.D1389N 0.28 tolerated(0.09) probably_damaging(0.996) TCGA-ZF-A9RG-01 X 44922802 44922802 C T KDM6A Nonsense_Mutation p.Q555* 0.13 TCGA-ZF-A9RG-01 X 44929487 44929487 C T KDM6A Nonsense_Mutation p.Q863* 0.21 TCGA-ZF-A9RG-01 X 73812302 73812302 C T RLIM Missense_Mutation p.R283K 0.14 tolerated(0.14) unknown(0) TCGA-ZF-A9RG-01 X 79698075 79698075 C T FAM46D Nonsense_Mutation p.Q13* 0.14 TCGA-ZF-A9RG-01 X 85218981 85218981 T A CHM Missense_Mutation p.T131S 0.22 tolerated(0.52) benign(0.003) TCGA-ZF-A9RG-01 X 99662162 99662162 G A PCDH19 Silent p.R478R 0.14 TCGA-ZF-A9RL-01 10 101943528 101943528 C A ERLIN1 Silent p.T60T 0.10 TCGA-ZF-A9RL-01 10 103990642 103990642 C T PITX3 Missense_Mutation p.G180R 0.24 tolerated(0.07) benign(0.124) TCGA-ZF-A9RL-01 10 112838147 112838147 C G ADRA2A Missense_Mutation p.F131L 0.37 deleterious(0) probably_damaging(0.969) TCGA-ZF-A9RL-01 10 118364952 118364952 T C PNLIPRP1 Silent p.D409D 0.21 TCGA-ZF-A9RL-01 10 119042868 119042868 C G PDZD8 Missense_Mutation p.D1126H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-ZF-A9RL-01 10 120354417 120354417 C A PRLHR Missense_Mutation p.V114L 0.07 deleterious(0) probably_damaging(0.967) TCGA-ZF-A9RL-01 10 12215717 12215717 C T NUDT5 Missense_Mutation p.A129T 0.24 tolerated(0.05) benign(0.225) TCGA-ZF-A9RL-01 10 123987417 123987417 G A TACC2 Missense_Mutation p.R2597Q 0.19 probably_damaging(0.999) TCGA-ZF-A9RL-01 10 135012623 135012623 G A KNDC1 Missense_Mutation p.D871N 0.33 tolerated(0.07) possibly_damaging(0.905) TCGA-ZF-A9RL-01 10 25313774 25313774 C G THNSL1 Missense_Mutation p.T541S 0.38 tolerated(0.14) probably_damaging(0.999) TCGA-ZF-A9RL-01 10 35320416 35320416 T C CUL2 Intron 0.52 TCGA-ZF-A9RL-01 10 61828623 61828623 C G ANK3 Missense_Mutation p.E4006Q 0.22 probably_damaging(0.968) TCGA-ZF-A9RL-01 10 61833576 61833576 C T ANK3 Missense_Mutation p.E2355K 0.24 benign(0.023) TCGA-ZF-A9RL-01 10 71264211 71264211 C T TSPAN15 Silent p.T196T 0.20 TCGA-ZF-A9RL-01 10 76910669 76910669 C G SAMD8 Missense_Mutation p.S128C 0.05 tolerated(0.07) benign(0.293) TCGA-ZF-A9RL-01 10 90356565 90356565 G C LIPJ Missense_Mutation p.D199H 0.26 deleterious(0.04) possibly_damaging(0.866) TCGA-ZF-A9RL-01 10 97987274 97987274 C T BLNK Missense_Mutation p.V85M 0.26 deleterious(0.03) possibly_damaging(0.772) TCGA-ZF-A9RL-01 11 102709358 102709358 C A MMP3 Missense_Mutation p.V385L 0.08 deleterious(0.01) benign(0.019) TCGA-ZF-A9RL-01 11 102709406 102709406 G T MMP3 Silent p.R369R 0.08 TCGA-ZF-A9RL-01 11 118949691 118949691 C T VPS11 Silent p.L749L 0.24 TCGA-ZF-A9RL-01 11 121008405 121008405 G A TECTA Missense_Mutation p.E1073K 0.29 tolerated(0.26) benign(0.083) TCGA-ZF-A9RL-01 11 124135564 124135564 C T OR8G5 Missense_Mutation p.S281L 0.22 tolerated(0.87) benign(0.031) TCGA-ZF-A9RL-01 11 126147485 126147485 G C FOXRED1 Missense_Mutation p.E454D 0.06 deleterious(0.04) possibly_damaging(0.764) TCGA-ZF-A9RL-01 11 4674582 4674582 G A OR51E1 Missense_Mutation p.V276I 0.38 tolerated(1) benign(0.028) TCGA-ZF-A9RL-01 11 47758272 47758272 C T FNBP4 Missense_Mutation p.E493K 0.37 tolerated(0.1) benign(0.077) TCGA-ZF-A9RL-01 11 4967756 4967756 G A OR51A4 Missense_Mutation p.S192F 0.37 deleterious(0) probably_damaging(0.968) TCGA-ZF-A9RL-01 11 59807875 59807875 G T OOSP2 5'UTR 0.06 TCGA-ZF-A9RL-01 11 66323656 66323656 G A CTD-3074O7.2 3'Flank 0.18 TCGA-ZF-A9RL-01 11 66326739 66326739 G C CTSF 3'Flank 0.12 TCGA-ZF-A9RL-01 11 67047367 67047367 G A ADRBK1 Missense_Mutation p.E167K 0.22 tolerated(0.07) benign(0.224) TCGA-ZF-A9RL-01 11 67168659 67168659 G A PPP1CA Missense_Mutation p.R34W 0.23 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-ZF-A9RL-01 11 67434384 67434384 G T ALDH3B2 Missense_Mutation p.T8K 0.09 tolerated(1) benign(0.002) TCGA-ZF-A9RL-01 11 67838308 67838308 G A CHKA Missense_Mutation p.T216I 0.44 deleterious(0.01) probably_damaging(0.968) TCGA-ZF-A9RL-01 11 71850672 71850672 G C FOLR3 Missense_Mutation p.E221Q 0.14 tolerated(0.16) benign(0.374) TCGA-ZF-A9RL-01 11 85989563 85989563 G C EED Missense_Mutation p.R441P 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-ZF-A9RL-01 11 985542 985542 G A AP2A2 Missense_Mutation p.V308M 0.11 deleterious(0) probably_damaging(0.927) TCGA-ZF-A9RL-01 12 104152923 104152923 C A STAB2 Silent p.R2374R 0.19 TCGA-ZF-A9RL-01 12 108086623 108086623 C G PWP1 Missense_Mutation p.L118V 0.24 tolerated(0.05) probably_damaging(0.948) TCGA-ZF-A9RL-01 12 120306966 120306966 G T CIT Missense_Mutation p.L46I 0.22 deleterious(0.02) benign(0.036) TCGA-ZF-A9RL-01 12 121465522 121465522 C G OASL Missense_Mutation p.E252D 0.40 tolerated(0.23) possibly_damaging(0.699) TCGA-ZF-A9RL-01 12 130892335 130892335 G C RIMBP2 Missense_Mutation p.T954R 0.08 deleterious(0.01) possibly_damaging(0.707) TCGA-ZF-A9RL-01 12 133196895 133196895 C G P2RX2 Missense_Mutation p.I199M 0.11 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9RL-01 12 18443805 18443805 C T PIK3C2G Missense_Mutation p.H260Y 0.24 tolerated(0.64) benign(0.035) TCGA-ZF-A9RL-01 12 25222328 25222328 C G LRMP 5'UTR 0.26 TCGA-ZF-A9RL-01 12 43945692 43945692 G C ADAMTS20 Silent p.L11L 0.16 TCGA-ZF-A9RL-01 12 4768304 4768304 T C NDUFA9 Silent p.N171N 0.24 TCGA-ZF-A9RL-01 12 54338930 54338930 G A HOXC13 Missense_Mutation p.A295T 0.28 tolerated(0.11) benign(0.072) TCGA-ZF-A9RL-01 12 56817597 56817597 G C TIMELESS Silent p.L650L 0.18 TCGA-ZF-A9RL-01 12 57637690 57637690 C T STAC3 Missense_Mutation p.V334M 0.17 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RL-01 12 6559644 6559644 C G CD27 Intron 0.22 TCGA-ZF-A9RL-01 12 6560112 6560112 C G CD27 Missense_Mutation p.S197C 0.19 deleterious(0.04) benign(0.086) TCGA-ZF-A9RL-01 12 7354881 7354881 G T PEX5 Silent p.L244L 0.17 TCGA-ZF-A9RL-01 12 7354882 7354882 G T PEX5 Nonsense_Mutation p.E245* 0.17 TCGA-ZF-A9RL-01 12 77438507 77438507 C T E2F7 Missense_Mutation p.V300I 0.04 deleterious(0.02) probably_damaging(0.946) TCGA-ZF-A9RL-01 12 92537933 92537933 T C BTG1 Missense_Mutation p.I147V 0.61 tolerated(0.11) benign(0.004) TCGA-ZF-A9RL-01 13 100515253 100515253 C G CLYBL Missense_Mutation p.D149E 0.06 tolerated(0.23) benign(0.05) TCGA-ZF-A9RL-01 13 21370907 21370907 C A XPO4 Missense_Mutation p.G871V 0.09 deleterious(0.03) benign(0.181) TCGA-ZF-A9RL-01 13 21370908 21370908 C A XPO4 Nonsense_Mutation p.G871* 0.09 TCGA-ZF-A9RL-01 13 24243015 24243015 G C TNFRSF19 Missense_Mutation p.E342Q 0.27 deleterious_low_confidence(0.02) benign(0.265) TCGA-ZF-A9RL-01 13 32705945 32705945 G T FRY Nonsense_Mutation p.E285* 0.24 TCGA-ZF-A9RL-01 13 39588502 39588502 G C PROSER1 Nonsense_Mutation p.S296* 0.25 TCGA-ZF-A9RL-01 13 41384975 41384975 G A SLC25A15 3'Flank 0.07 TCGA-ZF-A9RL-01 13 77748454 77748454 G C MYCBP2 Silent p.L1843L 0.25 TCGA-ZF-A9RL-01 13 88328749 88328749 C T SLITRK5 Missense_Mutation p.P369L 0.36 deleterious(0) possibly_damaging(0.691) TCGA-ZF-A9RL-01 14 103410592 103410592 C A CDC42BPB Silent p.V1348V 0.13 TCGA-ZF-A9RL-01 14 105411627 105411627 G A AHNAK2 Silent p.L3387L 0.21 TCGA-ZF-A9RL-01 14 105622234 105622234 G A JAG2 Silent p.L190L 0.25 TCGA-ZF-A9RL-01 14 106204005 106204005 G A IGHG1 3'UTR 0.46 TCGA-ZF-A9RL-01 14 106539261 106539261 G T IGHV1-8 Silent p.R57R 0.11 TCGA-ZF-A9RL-01 14 19553809 19553809 G A POTEG Silent p.P131P 0.08 TCGA-ZF-A9RL-01 14 21460707 21460707 G A METTL17 Missense_Mutation p.E152K 0.22 tolerated(0.17) benign(0.085) TCGA-ZF-A9RL-01 14 45581582 45581582 A G PRPF39 Missense_Mutation p.N545S 0.38 tolerated(0.36) benign(0.023) TCGA-ZF-A9RL-01 14 47389275 47389275 C G MDGA2 Missense_Mutation p.W726C 0.21 deleterious(0) probably_damaging(0.964) TCGA-ZF-A9RL-01 14 91763750 91763750 C A CCDC88C Missense_Mutation p.A1289S 0.12 tolerated(1) benign(0.003) TCGA-ZF-A9RL-01 14 94419818 94419818 C G ASB2 Missense_Mutation p.E172Q 0.21 deleterious(0.05) probably_damaging(0.942) TCGA-ZF-A9RL-01 14 95560417 95560417 C T DICER1 Silent p.P1724P 0.08 TCGA-ZF-A9RL-01 14 96771977 96771977 C G ATG2B Missense_Mutation p.G1561A 0.11 deleterious(0) possibly_damaging(0.891) TCGA-ZF-A9RL-01 15 102291867 102291867 G T DNM1P47 RNA 0.06 TCGA-ZF-A9RL-01 15 25449362 25449362 G C SNORD115-20 5'Flank 0.33 TCGA-ZF-A9RL-01 15 32460263 32460263 G A CHRNA7 Missense_Mutation p.M400I 0.14 tolerated(0.44) benign(0.009) TCGA-ZF-A9RL-01 15 51242073 51242073 C T AP4E1 Missense_Mutation p.S456L 0.28 deleterious(0.02) possibly_damaging(0.819) TCGA-ZF-A9RL-01 15 55965712 55965712 G A PRTG Missense_Mutation p.P570L 0.25 deleterious(0.04) possibly_damaging(0.597) TCGA-ZF-A9RL-01 15 78557111 78557111 G A DNAJA4 Silent p.V31V 0.43 TCGA-ZF-A9RL-01 15 83335615 83335615 G T AP3B2 Missense_Mutation p.A579E 0.08 deleterious(0) possibly_damaging(0.672) TCGA-ZF-A9RL-01 15 83440883 83440883 C G FSD2 Missense_Mutation p.E403D 0.28 tolerated(0.46) probably_damaging(0.914) TCGA-ZF-A9RL-01 15 83926593 83926593 C A BNC1 Silent p.S862S 0.08 TCGA-ZF-A9RL-01 15 90245194 90245194 G A WDR93 Missense_Mutation p.E73K 0.15 deleterious(0.01) benign(0.258) TCGA-ZF-A9RL-01 15 90293764 90293764 C T MESP1 Silent p.A233A 0.43 TCGA-ZF-A9RL-01 15 91017820 91017820 G T IQGAP1 Silent p.R893R 0.21 TCGA-ZF-A9RL-01 15 91017821 91017821 G T IQGAP1 Nonsense_Mutation p.E894* 0.22 TCGA-ZF-A9RL-01 15 91795180 91795180 G T SV2B Missense_Mutation p.V195L 0.29 deleterious(0.01) possibly_damaging(0.642) TCGA-ZF-A9RL-01 16 15826424 15826424 C G MYH11 Missense_Mutation p.K1223N 0.29 probably_damaging(0.966) TCGA-ZF-A9RL-01 16 2011547 2011547 T C NDUFB10 Missense_Mutation p.C107R 0.54 deleterious(0.02) probably_damaging(0.99) TCGA-ZF-A9RL-01 16 23652479 23652479 C A PALB2 5'UTR 0.16 TCGA-ZF-A9RL-01 16 24231400 24231400 C G PRKCB 3'UTR 0.18 TCGA-ZF-A9RL-01 16 25268336 25268336 G A ZKSCAN2 Missense_Mutation p.S38L 0.16 tolerated(0.3) benign(0.002) TCGA-ZF-A9RL-01 16 2580867 2580867 G T CEMP1 Missense_Mutation p.H70N 0.15 deleterious_low_confidence(0) benign(0.216) TCGA-ZF-A9RL-01 16 26147161 26147161 C T HS3ST4 Silent p.L321L 0.17 TCGA-ZF-A9RL-01 16 27518477 27518477 C A GTF3C1 Nonsense_Mutation p.G415* 0.10 TCGA-ZF-A9RL-01 16 27518478 27518478 C A GTF3C1 Splice_Site p.X415_splice 0.10 TCGA-ZF-A9RL-01 16 30941554 30941554 C T FBXL19 Missense_Mutation p.S337L 0.20 deleterious(0.04) possibly_damaging(0.784) TCGA-ZF-A9RL-01 16 3777906 3777906 C A CREBBP Missense_Mutation p.G2381V 0.28 unknown(0) TCGA-ZF-A9RL-01 16 3777907 3777907 C A CREBBP Missense_Mutation p.G2381C 0.28 unknown(0) TCGA-ZF-A9RL-01 16 51174227 51174227 T C SALL1 Missense_Mutation p.T636A 0.20 tolerated(0.45) benign(0) TCGA-ZF-A9RL-01 16 51174230 51174230 G T SALL1 Missense_Mutation p.P635T 0.20 tolerated(0.53) benign(0.001) TCGA-ZF-A9RL-01 16 53726245 53726245 C A RPGRIP1L Missense_Mutation p.D88Y 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-ZF-A9RL-01 16 58552690 58552690 T C SETD6 Silent p.D393D 0.34 TCGA-ZF-A9RL-01 16 58572795 58572800 GGCATC - CNOT1 In_Frame_Del p.D1671_A1672del 0.45 TCGA-ZF-A9RL-01 16 67401082 67401082 C T LRRC36 Missense_Mutation p.S306L 0.05 tolerated_low_confidence(0.2) benign(0.03) TCGA-ZF-A9RL-01 16 67697120 67697120 C G ENKD1 Missense_Mutation p.E329Q 0.15 deleterious(0) probably_damaging(0.99) TCGA-ZF-A9RL-01 16 67964372 67964372 G T CTRL Missense_Mutation p.N146K 0.07 tolerated(0.16) possibly_damaging(0.564) TCGA-ZF-A9RL-01 16 69782871 69782871 C G NOB1 Missense_Mutation p.V226L 0.20 tolerated(0.72) benign(0.006) TCGA-ZF-A9RL-01 16 71683666 71683666 C G PHLPP2 Missense_Mutation p.L1033F 0.05 tolerated(0.06) probably_damaging(0.999) TCGA-ZF-A9RL-01 16 72188328 72188328 C T PMFBP1 Missense_Mutation p.E66K 0.05 tolerated(0.45) benign(0.009) TCGA-ZF-A9RL-01 16 72827575 72827575 C G ZFHX3 Missense_Mutation p.K3002N 0.05 unknown(0) TCGA-ZF-A9RL-01 16 76555101 76555101 C A CNTNAP4 Missense_Mutation p.H737Q 0.04 tolerated(0.29) possibly_damaging(0.545) TCGA-ZF-A9RL-01 16 85840261 85840261 G T COX4I1 Intron 0.28 TCGA-ZF-A9RL-01 16 85840334 85840334 C G COX4I1 Intron 0.21 TCGA-ZF-A9RL-01 16 87902738 87902738 G A SLC7A5 Silent p.I97I 0.56 TCGA-ZF-A9RL-01 16 88767738 88767738 C A RNF166 Missense_Mutation p.D82Y 0.14 deleterious(0.01) possibly_damaging(0.656) TCGA-ZF-A9RL-01 16 88767739 88767739 C T RNF166 Silent p.V81V 0.14 TCGA-ZF-A9RL-01 16 89799951 89799951 G T ZNF276 Missense_Mutation p.A448S 0.05 tolerated(0.16) possibly_damaging(0.907) TCGA-ZF-A9RL-01 17 10219292 10219292 G C MYH13 Missense_Mutation p.I1263M 0.06 tolerated(0.22) benign(0.121) TCGA-ZF-A9RL-01 17 10222344 10222344 C A MYH13 Missense_Mutation p.M1167I 0.50 tolerated(0.3) benign(0.041) TCGA-ZF-A9RL-01 17 10545813 10545813 G A MYH3 Silent p.N603N 0.47 TCGA-ZF-A9RL-01 17 32612857 32612857 G T CCL11 Silent p.L10L 0.19 TCGA-ZF-A9RL-01 17 3527418 3527418 G C SHPK Missense_Mutation p.L140V 0.09 deleterious(0.03) probably_damaging(0.986) TCGA-ZF-A9RL-01 17 37026370 37026370 C G LASP1 5'UTR 0.45 TCGA-ZF-A9RL-01 17 43552640 43552640 G A PLEKHM1 Missense_Mutation p.S250F 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 17 44115978 44115978 C A KANSL1 Missense_Mutation p.V823L 0.16 tolerated(0.26) benign(0.137) TCGA-ZF-A9RL-01 17 44115979 44115979 C T KANSL1 Silent p.L822L 0.15 TCGA-ZF-A9RL-01 17 50235150 50235150 C G CA10 5'UTR 0.24 TCGA-ZF-A9RL-01 17 5289549 5289549 T C NUP88 Missense_Mutation p.I735V 0.93 tolerated(0.17) benign(0.07) TCGA-ZF-A9RL-01 17 60088210 60088210 C G MED13 Missense_Mutation p.Q556H 0.23 tolerated(0.6) benign(0.007) TCGA-ZF-A9RL-01 17 62080230 62080230 C T ICAM2 Silent p.L235L 0.09 TCGA-ZF-A9RL-01 17 62226264 62226264 T C TEX2 3'UTR 0.21 TCGA-ZF-A9RL-01 17 66417863 66417863 C G WIPI1 3'UTR 0.17 TCGA-ZF-A9RL-01 17 71192745 71192745 C G COG1 Missense_Mutation p.Q139E 0.15 tolerated(0.38) benign(0.023) TCGA-ZF-A9RL-01 17 74714847 74714847 G A JMJD6 Silent p.D392D 0.23 TCGA-ZF-A9RL-01 17 7578453 7578471 GGCGCGGACGCGGGTGCCG - TP53 Frame_Shift_Del p.G154Wfs*10 0.74 TCGA-ZF-A9RL-01 17 79872379 79872379 C T SIRT7 Missense_Mutation p.E203K 0.20 deleterious(0.01) possibly_damaging(0.688) TCGA-ZF-A9RL-01 18 12329608 12329608 C T AFG3L2 Missense_Mutation p.E784K 0.47 tolerated(0.1) benign(0.292) TCGA-ZF-A9RL-01 18 12512522 12512522 C T SPIRE1 Silent p.K246K 0.25 TCGA-ZF-A9RL-01 18 20573318 20573318 G A RBBP8 Missense_Mutation p.E510K 0.08 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RL-01 18 21119907 21119907 G C NPC1 Missense_Mutation p.P888R 0.26 deleterious(0) probably_damaging(1) TCGA-ZF-A9RL-01 18 3067313 3067313 C T MYOM1 Missense_Mutation p.E1669K 0.19 tolerated(0.14) benign(0.271) TCGA-ZF-A9RL-01 18 72344821 72344821 C A ZNF407 Missense_Mutation p.L616I 0.34 tolerated(0.39) benign(0.032) TCGA-ZF-A9RL-01 18 72346054 72346054 C T ZNF407 Missense_Mutation p.H1027Y 0.33 deleterious(0.01) benign(0.027) TCGA-ZF-A9RL-01 19 10291220 10291220 G C DNMT1 Missense_Mutation p.S84C 0.28 tolerated_low_confidence(0.12) probably_damaging(0.971) TCGA-ZF-A9RL-01 19 10291537 10291537 G C DNMT1 Missense_Mutation p.L48V 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ZF-A9RL-01 19 12384109 12384109 G C ZNF44 Missense_Mutation p.L369V 0.32 tolerated(0.5) benign(0.344) TCGA-ZF-A9RL-01 19 13870024 13870024 G A CCDC130 Missense_Mutation p.E171K 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-ZF-A9RL-01 19 13885342 13885342 G C C19orf53 Missense_Mutation p.K17N 0.17 deleterious(0.02) probably_damaging(0.939) TCGA-ZF-A9RL-01 19 14029556 14029556 C T CC2D1A Intron 0.24 TCGA-ZF-A9RL-01 19 16612137 16612137 A G C19orf44 Silent p.Q178Q 0.65 TCGA-ZF-A9RL-01 19 17752225 17752225 G A UNC13A Silent p.V871V 0.66 TCGA-ZF-A9RL-01 19 17877490 17877490 G T FCHO1 Silent p.P69P 0.54 TCGA-ZF-A9RL-01 19 31769550 31769550 C T TSHZ3 Silent p.S383S 0.36 TCGA-ZF-A9RL-01 19 3179874 3179874 C T S1PR4 Missense_Mutation p.R362C 0.32 deleterious(0) probably_damaging(0.98) TCGA-ZF-A9RL-01 19 33183437 33183437 A G NUDT19 Missense_Mutation p.I191V 0.42 deleterious(0.02) possibly_damaging(0.735) TCGA-ZF-A9RL-01 19 38027962 38027962 G C ZNF793 Missense_Mutation p.Q134H 0.28 tolerated(0.24) possibly_damaging(0.459) TCGA-ZF-A9RL-01 19 38713043 38713043 G C DPF1 Silent p.L111L 0.20 TCGA-ZF-A9RL-01 19 39025833 39025833 C T RYR1 Silent p.L3804L 0.20 TCGA-ZF-A9RL-01 19 4327383 4327383 C T STAP2 Splice_Site p.X197_splice 0.42 TCGA-ZF-A9RL-01 19 46914975 46914975 C G CCDC8 Missense_Mutation p.D365H 0.03 benign(0.437) TCGA-ZF-A9RL-01 19 47858446 47858446 C A DHX34 Missense_Mutation p.L286I 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-ZF-A9RL-01 19 50305798 50305798 G C AP2A1 Missense_Mutation p.E708Q 0.23 tolerated(0.56) benign(0.403) TCGA-ZF-A9RL-01 19 50305837 50305837 G A AP2A1 Missense_Mutation p.D721N 0.25 tolerated(0.47) possibly_damaging(0.539) TCGA-ZF-A9RL-01 19 50784954 50784954 G T MYH14 Missense_Mutation p.R1465L 0.25 deleterious(0.01) possibly_damaging(0.79) TCGA-ZF-A9RL-01 19 50909436 50909436 C G POLD1 Intron 0.26 TCGA-ZF-A9RL-01 19 53270961 53270961 G A ZNF600 Silent p.I16I 0.15 TCGA-ZF-A9RL-01 19 53854332 53854332 C A ZNF845 Missense_Mutation p.P135H 0.18 tolerated(0.14) probably_damaging(0.999) TCGA-ZF-A9RL-01 19 55591149 55591149 G C EPS8L1 Missense_Mutation p.R70P 0.22 deleterious(0) probably_damaging(0.987) TCGA-ZF-A9RL-01 19 58571458 58571458 C A ZNF135 Intron 0.09 TCGA-ZF-A9RL-01 19 6040227 6040227 C T RFX2 Missense_Mutation p.E96K 0.23 tolerated(0.06) benign(0.417) TCGA-ZF-A9RL-01 19 9453063 9453063 C G ZNF559 Silent p.L312L 0.23 TCGA-ZF-A9RL-01 1 10397460 10397460 G C KIF1B Missense_Mutation p.K1051N 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-ZF-A9RL-01 1 10532574 10532574 C T DFFA 5'UTR 0.36 TCGA-ZF-A9RL-01 1 10532575 10532575 C A DFFA 5'UTR 0.36 TCGA-ZF-A9RL-01 1 10725290 10725290 C T CASZ1 Missense_Mutation p.E119K 0.23 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-ZF-A9RL-01 1 115252309 115252309 T C NRAS Missense_Mutation p.M111V 0.57 tolerated(0.2) benign(0.023) TCGA-ZF-A9RL-01 1 11716154 11716154 G T FBXO44 Nonsense_Mutation p.E88* 0.05 TCGA-ZF-A9RL-01 1 1290660 1290660 C T MXRA8 Missense_Mutation p.E148K 0.27 deleterious(0.02) benign(0.385) TCGA-ZF-A9RL-01 1 12919825 12919825 C G PRAMEF2 Missense_Mutation p.L189V 0.17 tolerated(0.07) probably_damaging(0.913) TCGA-ZF-A9RL-01 1 143912342 143912342 G C FAM72D 5'UTR 0.26 TCGA-ZF-A9RL-01 1 152080573 152080573 C T TCHH Missense_Mutation p.R1707K 0.34 unknown(0) TCGA-ZF-A9RL-01 1 155106431 155106431 A G EFNA1 Missense_Mutation p.D169G 0.43 deleterious(0.05) benign(0.101) TCGA-ZF-A9RL-01 1 15888662 15888662 G C DNAJC16 Missense_Mutation p.E394Q 0.12 tolerated(0.11) probably_damaging(0.947) TCGA-ZF-A9RL-01 1 161010081 161010081 G A USF1 Nonsense_Mutation p.Q252* 0.22 TCGA-ZF-A9RL-01 1 161559467 161559467 G A RP11-25K21.6 Intron 0.57 TCGA-ZF-A9RL-01 1 173934024 173934024 T C RC3H1 Silent p.G523G 0.62 TCGA-ZF-A9RL-01 1 175063332 175063332 G T TNN Missense_Mutation p.V511L 0.22 tolerated(0.09) possibly_damaging(0.837) TCGA-ZF-A9RL-01 1 182554725 182554725 G C RNASEL Missense_Mutation p.S406C 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-ZF-A9RL-01 1 185270194 185270194 C G IVNS1ABP Missense_Mutation p.D344H 0.29 tolerated(0.06) benign(0.004) TCGA-ZF-A9RL-01 1 19652799 19652799 T A PQLC2 Missense_Mutation p.L148Q 0.18 deleterious(0.03) benign(0.025) TCGA-ZF-A9RL-01 1 200877931 200877931 T G C1orf106 Silent p.L216L 0.11 TCGA-ZF-A9RL-01 1 220379266 220379266 C T RAB3GAP2 Missense_Mutation p.R232Q 0.36 deleterious(0) possibly_damaging(0.844) TCGA-ZF-A9RL-01 1 22176590 22176590 C A HSPG2 Missense_Mutation p.A2464S 0.06 benign(0.044) TCGA-ZF-A9RL-01 1 22191810 22191810 C T HSPG2 Missense_Mutation p.E1455K 0.12 benign(0.115) TCGA-ZF-A9RL-01 1 228504576 228504576 C T OBSCN Silent p.A5441A 0.56 TCGA-ZF-A9RL-01 1 22903295 22903295 G A EPHA8 Missense_Mutation p.A249T 0.14 tolerated(0.18) possibly_damaging(0.808) TCGA-ZF-A9RL-01 1 231360132 231360132 T C C1orf131 Missense_Mutation p.I259V 0.26 tolerated(0.07) possibly_damaging(0.768) TCGA-ZF-A9RL-01 1 236767261 236767261 G A HEATR1 Silent p.F45F 0.31 TCGA-ZF-A9RL-01 1 24410863 24410863 G A MYOM3 Intron 0.12 TCGA-ZF-A9RL-01 1 248112618 248112618 C G OR2L8 Missense_Mutation p.I153M 0.12 deleterious(0) benign(0.358) TCGA-ZF-A9RL-01 1 248224442 248224442 C G OR2L3 Missense_Mutation p.I153M 0.11 deleterious(0.01) benign(0.311) TCGA-ZF-A9RL-01 1 248637606 248637606 T A OR2T3 Nonstop_Mutation p.*319Kext*1 0.22 TCGA-ZF-A9RL-01 1 26507320 26507320 A G CNKSR1 Missense_Mutation p.I109V 0.27 tolerated(0.29) benign(0.002) TCGA-ZF-A9RL-01 1 27121583 27121583 G T PIGV Missense_Mutation p.C353F 0.07 deleterious(0.01) benign(0.25) TCGA-ZF-A9RL-01 1 36636569 36636569 C G MAP7D1 Intron 0.10 TCGA-ZF-A9RL-01 1 86196221 86196221 C T COL24A1 3'UTR 0.24 TCGA-ZF-A9RL-01 20 11904279 11904279 G A BTBD3 Missense_Mutation p.G512R 0.37 deleterious(0) possibly_damaging(0.823) TCGA-ZF-A9RL-01 20 19955925 19955925 G T RIN2 Missense_Mutation p.R468L 0.19 tolerated(0.12) benign(0.004) TCGA-ZF-A9RL-01 20 30193182 30193182 C G ID1 5'UTR 0.17 TCGA-ZF-A9RL-01 20 34832616 34832616 C G AAR2 Intron 0.19 TCGA-ZF-A9RL-01 20 43034848 43034848 G A HNF4A Missense_Mutation p.R89Q 0.17 deleterious(0.01) benign(0.026) TCGA-ZF-A9RL-01 20 4837457 4837457 C T SLC23A2 3'UTR 0.67 TCGA-ZF-A9RL-01 20 52779390 52779390 T G CYP24A1 Missense_Mutation p.I286L 0.47 deleterious(0.01) benign(0.016) TCGA-ZF-A9RL-01 20 60578917 60578917 C T TAF4 Silent p.P747P 0.39 TCGA-ZF-A9RL-01 21 17962583 17962583 C A MIR125B2 RNA 0.11 TCGA-ZF-A9RL-01 21 17962584 17962584 C A MIR125B2 RNA 0.11 TCGA-ZF-A9RL-01 21 19632604 19632604 G A CHODL Splice_Site p.X212_splice 0.29 TCGA-ZF-A9RL-01 21 27284167 27284167 C G APP Missense_Mutation p.E599Q 0.18 tolerated(0.09) possibly_damaging(0.852) TCGA-ZF-A9RL-01 21 28210348 28210348 T C ADAMTS1 Silent p.K818K 0.25 TCGA-ZF-A9RL-01 21 31874295 31874295 G A KRTAP19-5 Silent p.G38G 0.34 TCGA-ZF-A9RL-01 21 37602933 37602933 G A DOPEY2 Nonsense_Mutation p.W617* 0.16 TCGA-ZF-A9RL-01 21 37605253 37605253 G A DOPEY2 Silent p.K834K 0.42 TCGA-ZF-A9RL-01 21 43332457 43332457 C T C2CD2 Missense_Mutation p.E313K 0.11 tolerated(0.34) benign(0.328) TCGA-ZF-A9RL-01 22 16287676 16287676 G A POTEH Silent p.P70P 0.20 TCGA-ZF-A9RL-01 22 26157029 26157029 C G MYO18B 5'UTR 0.17 TCGA-ZF-A9RL-01 22 26895343 26895343 G C TFIP11 Silent p.L352L 0.18 TCGA-ZF-A9RL-01 22 38120676 38120676 G A TRIOBP Missense_Mutation p.D705N 0.30 tolerated_low_confidence(1) benign(0) TCGA-ZF-A9RL-01 22 50716359 50716359 G C PLXNB2 Missense_Mutation p.F1657L 0.08 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RL-01 2 109365525 109365525 G C RANBP2 Missense_Mutation p.D405H 0.19 deleterious(0) benign(0.326) TCGA-ZF-A9RL-01 2 112550012 112550012 C T ANAPC1 Missense_Mutation p.G1547S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9RL-01 2 113832779 113832779 C T IL1F10 Silent p.F99F 0.05 TCGA-ZF-A9RL-01 2 120849189 120849189 G C EPB41L5 Missense_Mutation p.E368Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RL-01 2 122363383 122363383 T C CLASP1 Missense_Mutation p.Y30C 0.14 deleterious(0) probably_damaging(0.91) TCGA-ZF-A9RL-01 2 128622681 128622681 T C AMMECR1L Missense_Mutation p.N307S 0.38 deleterious_low_confidence(0.02) benign(0.311) TCGA-ZF-A9RL-01 2 130725932 130725932 C T RAB6C-AS1 RNA 0.15 TCGA-ZF-A9RL-01 2 131520826 131520826 G A AMER3 Missense_Mutation p.G394E 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RL-01 2 136540498 136540498 A G UBXN4 3'UTR 0.50 TCGA-ZF-A9RL-01 2 141283902 141283902 C A LRP1B Missense_Mutation p.V2594F 0.07 possibly_damaging(0.727) TCGA-ZF-A9RL-01 2 160092484 160092484 T G WDSUB1 3'UTR 0.30 TCGA-ZF-A9RL-01 2 160604655 160604655 G T MARCH7 Missense_Mutation p.R285L 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9RL-01 2 165555944 165555944 A G COBLL1 Missense_Mutation p.L548S 0.21 tolerated(0.06) benign(0.099) TCGA-ZF-A9RL-01 2 182542962 182542962 G A NEUROD1 Missense_Mutation p.T209M 0.27 tolerated(0.19) benign(0.425) TCGA-ZF-A9RL-01 2 197662607 197662607 G C GTF3C3 Nonsense_Mutation p.S43* 0.17 TCGA-ZF-A9RL-01 2 218700920 218700920 C T TNS1 Missense_Mutation p.E883K 0.25 tolerated(0.44) possibly_damaging(0.777) TCGA-ZF-A9RL-01 2 231223823 231223823 C T SP140L Missense_Mutation p.H139Y 0.24 tolerated(0.06) benign(0.211) TCGA-ZF-A9RL-01 2 234652506 234652506 G A UGT1A10 Intron 0.23 TCGA-ZF-A9RL-01 2 239974734 239974734 C G HDAC4 3'UTR 0.11 TCGA-ZF-A9RL-01 2 24051785 24051785 G A ATAD2B Missense_Mutation p.H585Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RL-01 2 25972772 25972772 C T ASXL2 Missense_Mutation p.M551I 0.25 tolerated(0.2) benign(0.017) TCGA-ZF-A9RL-01 2 27566208 27566208 C G GTF3C2 Missense_Mutation p.E72Q 0.24 deleterious_low_confidence(0.02) benign(0.23) TCGA-ZF-A9RL-01 2 27597567 27597567 C G SNX17 Missense_Mutation p.S208C 0.15 tolerated(0.13) benign(0.02) TCGA-ZF-A9RL-01 2 27662724 27662724 C T NRBP1 Missense_Mutation p.S332L 0.31 tolerated(0.09) benign(0.009) TCGA-ZF-A9RL-01 2 32445633 32445633 C G SLC30A6 Missense_Mutation p.L453V 0.23 tolerated_low_confidence(0.06) benign(0.03) TCGA-ZF-A9RL-01 2 32640253 32640253 C T BIRC6 Missense_Mutation p.L632F 0.17 probably_damaging(0.994) TCGA-ZF-A9RL-01 2 72722561 72722561 T C EXOC6B Silent p.L517L 0.27 TCGA-ZF-A9RL-01 2 88409913 88409913 G T SMYD1 Missense_Mutation p.R452L 0.10 deleterious(0.05) benign(0.029) TCGA-ZF-A9RL-01 2 9580668 9580668 A G CPSF3 Missense_Mutation p.Y270C 0.29 deleterious(0) probably_damaging(0.979) TCGA-ZF-A9RL-01 2 95815295 95815295 C A ZNF514 Missense_Mutation p.G312V 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-A9RL-01 2 95815296 95815296 C A ZNF514 Nonsense_Mutation p.G312* 0.24 TCGA-ZF-A9RL-01 2 98350949 98350949 C A ZAP70 Intron 0.38 TCGA-ZF-A9RL-01 2 98350950 98350950 C A ZAP70 Intron 0.38 TCGA-ZF-A9RL-01 3 112732136 112732136 G A C3orf17 Silent p.C152C 0.33 TCGA-ZF-A9RL-01 3 112732137 112732137 C A C3orf17 Missense_Mutation p.C152F 0.34 deleterious(0) probably_damaging(0.971) TCGA-ZF-A9RL-01 3 124449313 124449313 G T UMPS 5'UTR 0.05 TCGA-ZF-A9RL-01 3 132440815 132440815 C A NPHP3 Nonsense_Mutation p.E129* 0.35 TCGA-ZF-A9RL-01 3 141161333 141161333 G A ZBTB38 Missense_Mutation p.V35I 0.25 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RL-01 3 1415733 1415733 G C CNTN6 Missense_Mutation p.E691Q 0.14 tolerated(0.17) benign(0.042) TCGA-ZF-A9RL-01 3 142259785 142259785 C A ATR Missense_Mutation p.G1181V 0.21 deleterious(0) probably_damaging(0.969) TCGA-ZF-A9RL-01 3 142430888 142430888 A G PLS1 3'UTR 0.24 TCGA-ZF-A9RL-01 3 1445031 1445031 G C CNTN6 Missense_Mutation p.E1006Q 0.16 tolerated(0.56) benign(0.003) TCGA-ZF-A9RL-01 3 14552782 14552782 G T GRIP2 RNA 0.17 TCGA-ZF-A9RL-01 3 14552783 14552783 G C GRIP2 RNA 0.13 TCGA-ZF-A9RL-01 3 147131158 147131158 G T ZIC1 Silent p.S388S 0.08 TCGA-ZF-A9RL-01 3 150176290 150176290 C G TSC22D2 Nonsense_Mutation p.S737* 0.24 TCGA-ZF-A9RL-01 3 151463418 151463418 A G AADACL2 Missense_Mutation p.I185V 0.41 tolerated(0.65) benign(0.128) TCGA-ZF-A9RL-01 3 15616524 15616524 C G HACL1 Missense_Mutation p.G290A 0.16 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RL-01 3 160122125 160122125 G A SMC4 Missense_Mutation p.D174N 0.17 tolerated(0.07) benign(0.033) TCGA-ZF-A9RL-01 3 169497252 169497252 G T MYNN Missense_Mutation p.M321I 0.08 tolerated(0.43) probably_damaging(0.952) TCGA-ZF-A9RL-01 3 178916957 178916957 G T PIK3CA Missense_Mutation p.R115L 0.50 tolerated(0.44) benign(0.147) TCGA-ZF-A9RL-01 3 185155359 185155359 G A MAP3K13 Silent p.Q200Q 0.39 TCGA-ZF-A9RL-01 3 20202603 20202603 C G SGOL1 Missense_Mutation p.L560F 0.53 benign(0.068) TCGA-ZF-A9RL-01 3 30729955 30729955 G C TGFBR2 Missense_Mutation p.L517F 0.37 deleterious(0) possibly_damaging(0.905) TCGA-ZF-A9RL-01 3 3887975 3887975 G C LRRN1 Missense_Mutation p.M550I 0.19 tolerated(0.31) benign(0.003) TCGA-ZF-A9RL-01 3 44540951 44540951 C G ZNF852 Missense_Mutation p.E440Q 0.09 tolerated(0.06) possibly_damaging(0.885) TCGA-ZF-A9RL-01 3 44636137 44636137 C G ZNF660 Nonsense_Mutation p.S151* 0.17 TCGA-ZF-A9RL-01 3 48965041 48965041 A G ARIH2 Missense_Mutation p.Y17C 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.533) TCGA-ZF-A9RL-01 3 49679857 49679857 G C BSN Missense_Mutation p.E264Q 0.31 unknown(0) TCGA-ZF-A9RL-01 3 50677925 50677925 C T MAPKAPK3 Silent p.I116I 0.17 TCGA-ZF-A9RL-01 3 51669661 51669661 G T RAD54L2 Missense_Mutation p.V399L 0.14 deleterious(0.02) benign(0.378) TCGA-ZF-A9RL-01 3 52472134 52472134 C A SEMA3G Nonsense_Mutation p.E531* 0.22 TCGA-ZF-A9RL-01 3 62464063 62464063 A G CADPS Missense_Mutation p.F1068L 0.22 tolerated(0.36) benign(0.153) TCGA-ZF-A9RL-01 3 71021828 71021828 C G FOXP1 Splice_Site p.X513_splice 0.10 TCGA-ZF-A9RL-01 3 99568842 99568842 C G FILIP1L Missense_Mutation p.V560L 0.12 tolerated(1) benign(0.012) TCGA-ZF-A9RL-01 4 10447196 10447196 G C ZNF518B Missense_Mutation p.Q253E 0.18 deleterious(0.03) benign(0.079) TCGA-ZF-A9RL-01 4 114278500 114278500 C A ANK2 Missense_Mutation p.P2909H 0.04 probably_damaging(0.94) TCGA-ZF-A9RL-01 4 134071766 134071766 C T PCDH10 Silent p.R157R 0.07 TCGA-ZF-A9RL-01 4 146031388 146031388 C A ABCE1 Missense_Mutation p.A180E 0.35 deleterious(0.01) benign(0.281) TCGA-ZF-A9RL-01 4 148461017 148461017 C G EDNRA Missense_Mutation p.L317V 0.27 tolerated(0.12) probably_damaging(0.999) TCGA-ZF-A9RL-01 4 170327844 170327844 C A NEK1 Missense_Mutation p.D1093Y 0.07 deleterious(0) probably_damaging(0.967) TCGA-ZF-A9RL-01 4 175898960 175898960 C G ADAM29 Missense_Mutation p.P762A 0.20 tolerated(0.41) benign(0) TCGA-ZF-A9RL-01 4 175899008 175899008 C T ADAM29 Nonsense_Mutation p.Q778* 0.21 TCGA-ZF-A9RL-01 4 1807889 1807889 A G FGFR3 Missense_Mutation p.K652E 0.42 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 4 183676174 183676174 G C TENM3 Missense_Mutation p.D1552H 0.22 deleterious(0.02) benign(0.102) TCGA-ZF-A9RL-01 4 187630782 187630782 G A FAT1 Missense_Mutation p.A67V 0.20 benign(0.001) TCGA-ZF-A9RL-01 4 2209866 2209866 C A POLN Missense_Mutation p.G188W 0.19 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RL-01 4 25835109 25835109 C T SEL1L3 Missense_Mutation p.E315K 0.07 tolerated(0.09) possibly_damaging(0.474) TCGA-ZF-A9RL-01 4 42037314 42037314 A G SLC30A9 Missense_Mutation p.I211M 0.27 tolerated(0.3) benign(0.003) TCGA-ZF-A9RL-01 4 46307650 46307650 G C GABRA2 Missense_Mutation p.S213C 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-ZF-A9RL-01 4 49052780 49052780 C T CWH43 Silent p.I645I 0.10 TCGA-ZF-A9RL-01 4 57314685 57314685 G C PAICS Missense_Mutation p.M172I 0.27 benign(0.318) TCGA-ZF-A9RL-01 4 74352694 74352694 G C AFM Missense_Mutation p.E165Q 0.27 deleterious(0.01) probably_damaging(1) TCGA-ZF-A9RL-01 4 77300523 77300523 G T CCDC158 Missense_Mutation p.R317S 0.25 tolerated(0.23) benign(0.172) TCGA-ZF-A9RL-01 4 8082509 8082509 C T ABLIM2 Missense_Mutation p.E159K 0.30 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 4 85600134 85600134 C A WDFY3 Missense_Mutation p.G3362V 0.19 tolerated_low_confidence(0.21) benign(0) TCGA-ZF-A9RL-01 4 88026829 88026829 G A AFF1 Missense_Mutation p.E445K 0.07 deleterious(0.01) unknown(0) TCGA-ZF-A9RL-01 5 108290593 108290593 C T FER Missense_Mutation p.S498F 0.28 deleterious(0.03) probably_damaging(0.922) TCGA-ZF-A9RL-01 5 121780284 121780284 C T SNCAIP Silent p.V483V 0.10 TCGA-ZF-A9RL-01 5 134074346 134074346 G C CAMLG Missense_Mutation p.E12D 0.50 tolerated_low_confidence(1) benign(0.001) TCGA-ZF-A9RL-01 5 13901432 13901432 G A DNAH5 Missense_Mutation p.R661C 0.21 possibly_damaging(0.599) TCGA-ZF-A9RL-01 5 140166206 140166206 G A PCDHA1 Missense_Mutation p.D111N 0.53 deleterious_low_confidence(0.02) benign(0.371) TCGA-ZF-A9RL-01 5 140215430 140215430 G T PCDHA7 Missense_Mutation p.A488S 0.06 tolerated_low_confidence(0.08) possibly_damaging(0.794) TCGA-ZF-A9RL-01 5 140256840 140256840 C T PCDHA12 Missense_Mutation p.R595C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-ZF-A9RL-01 5 140581588 140581588 G C PCDHB11 Missense_Mutation p.Q747H 0.22 tolerated_low_confidence(0.43) benign(0.004) TCGA-ZF-A9RL-01 5 140711156 140711156 C G PCDHGA1 Nonsense_Mutation p.S302* 0.30 TCGA-ZF-A9RL-01 5 140769076 140769076 C T PCDHGB4 Missense_Mutation p.A542V 0.18 deleterious(0.02) possibly_damaging(0.634) TCGA-ZF-A9RL-01 5 146030241 146030241 C G PPP2R2B Missense_Mutation p.R168P 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-A9RL-01 5 154179579 154179579 C T LARP1 Missense_Mutation p.R488W 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-A9RL-01 5 156721803 156721803 G T CYFIP2 Intron 0.13 TCGA-ZF-A9RL-01 5 156721804 156721804 G T CYFIP2 Intron 0.13 TCGA-ZF-A9RL-01 5 36035883 36035883 G T UGT3A2 Missense_Mutation p.L497M 0.60 deleterious(0.03) possibly_damaging(0.718) TCGA-ZF-A9RL-01 5 36677103 36677103 G A SLC1A3 Missense_Mutation p.R226Q 0.16 tolerated(0.3) benign(0.009) TCGA-ZF-A9RL-01 5 54603794 54603794 G T SKIV2L2 5'UTR 0.44 TCGA-ZF-A9RL-01 5 77311345 77311345 G C AP3B1 Missense_Mutation p.S1007C 0.31 deleterious(0.05) possibly_damaging(0.7) TCGA-ZF-A9RL-01 5 82816062 82816062 C T VCAN Missense_Mutation p.P646L 0.23 tolerated(0.13) possibly_damaging(0.894) TCGA-ZF-A9RL-01 5 89925318 89925318 G C GPR98 Missense_Mutation p.D601H 0.44 probably_damaging(0.953) TCGA-ZF-A9RL-01 6 102337597 102337597 T A GRIK2 Missense_Mutation p.L536H 0.18 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RL-01 6 102337649 102337649 C T GRIK2 Silent p.F553F 0.43 TCGA-ZF-A9RL-01 6 109765033 109765033 C T SMPD2 Silent p.A399A 0.22 TCGA-ZF-A9RL-01 6 111884237 111884237 C A TRAF3IP2 Missense_Mutation p.Q494H 0.19 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RL-01 6 116720706 116720706 G C DSE Missense_Mutation p.W98S 0.23 deleterious(0.04) possibly_damaging(0.656) TCGA-ZF-A9RL-01 6 116720707 116720707 G T DSE Missense_Mutation p.W98C 0.23 deleterious(0) probably_damaging(0.939) TCGA-ZF-A9RL-01 6 137525483 137525483 T C IFNGR1 Missense_Mutation p.M178V 0.37 tolerated(0.8) benign(0) TCGA-ZF-A9RL-01 6 143093331 143093331 C G HIVEP2 Missense_Mutation p.E849Q 0.23 deleterious(0.02) possibly_damaging(0.827) TCGA-ZF-A9RL-01 6 143093773 143093773 C G HIVEP2 Missense_Mutation p.K701N 0.19 deleterious(0.04) possibly_damaging(0.511) TCGA-ZF-A9RL-01 6 143095264 143095264 C G HIVEP2 Silent p.L204L 0.20 TCGA-ZF-A9RL-01 6 143095356 143095356 C T HIVEP2 Missense_Mutation p.E174K 0.20 deleterious(0) benign(0.297) TCGA-ZF-A9RL-01 6 144033176 144033176 A G PHACTR2 Missense_Mutation p.I24V 0.46 tolerated(0.25) benign(0.015) TCGA-ZF-A9RL-01 6 144098521 144098521 G C PHACTR2 Splice_Site p.X549_splice 0.38 TCGA-ZF-A9RL-01 6 149700405 149700405 C T TAB2 Nonsense_Mutation p.R452* 0.32 TCGA-ZF-A9RL-01 6 153292386 153292386 C G FBXO5 Missense_Mutation p.C419S 0.41 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 6 154744114 154744114 G C CNKSR3 Missense_Mutation p.P245A 0.28 deleterious(0.04) possibly_damaging(0.585) TCGA-ZF-A9RL-01 6 160905249 160905249 G C LPAL2 RNA 0.16 TCGA-ZF-A9RL-01 6 16141917 16141917 G C MYLIP Missense_Mutation p.E114Q 0.25 tolerated(0.3) possibly_damaging(0.762) TCGA-ZF-A9RL-01 6 168227233 168227233 C T MLLT4 5'Flank 0.20 TCGA-ZF-A9RL-01 6 21596141 21596141 C G SOX4 Missense_Mutation p.S459W 0.33 deleterious(0) unknown(0) TCGA-ZF-A9RL-01 6 22287784 22287784 G C PRL Silent p.V177V 0.18 TCGA-ZF-A9RL-01 6 25540226 25540226 G T LRRC16A Missense_Mutation p.G750C 0.15 deleterious(0.01) possibly_damaging(0.627) TCGA-ZF-A9RL-01 6 25540227 25540227 G T LRRC16A Missense_Mutation p.G750V 0.15 tolerated(0.05) benign(0.007) TCGA-ZF-A9RL-01 6 25811918 25811918 C G SLC17A1 Silent p.L326L 0.23 TCGA-ZF-A9RL-01 6 26056117 26056117 C G HIST1H1C Silent p.A180A 0.52 TCGA-ZF-A9RL-01 6 26271447 26271447 G A HIST1H3G Nonsense_Mutation p.Q56* 0.19 TCGA-ZF-A9RL-01 6 30675733 30675733 C G MDC1 Missense_Mutation p.D875H 0.19 tolerated(0.07) probably_damaging(0.993) TCGA-ZF-A9RL-01 6 31604530 31604530 C G PRRC2A Missense_Mutation p.D1985E 0.43 unknown(0) TCGA-ZF-A9RL-01 6 33967754 33967754 C G MIR1275 RNA 0.18 TCGA-ZF-A9RL-01 6 36043703 36043703 G C MAPK14 Missense_Mutation p.E192Q 0.27 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RL-01 6 36652071 36652072 - G CDKN1A Frame_Shift_Ins p.E66Gfs*23 0.28 TCGA-ZF-A9RL-01 6 42236621 42236621 G A TRERF1 Silent p.Y236Y 0.32 TCGA-ZF-A9RL-01 6 44280986 44280986 G C AARS2 Silent p.L25L 0.36 TCGA-ZF-A9RL-01 6 52906030 52906030 T C ICK Missense_Mutation p.N2S 0.16 deleterious(0.01) benign(0.15) TCGA-ZF-A9RL-01 6 53373430 53373430 G A GCLC Missense_Mutation p.S303F 0.43 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RL-01 6 56417488 56417488 G A DST Nonsense_Mutation p.Q2745* 0.19 TCGA-ZF-A9RL-01 6 62604676 62604676 C T KHDRBS2 Missense_Mutation p.G225E 0.29 deleterious(0) probably_damaging(0.927) TCGA-ZF-A9RL-01 6 66204893 66204893 A T EYS Missense_Mutation p.N137K 0.23 tolerated_low_confidence(0.13) benign(0.01) TCGA-ZF-A9RL-01 6 7582914 7582914 C G DSP Missense_Mutation p.Q1807E 0.05 benign(0.05) TCGA-ZF-A9RL-01 6 97246729 97246729 G A GPR63 Silent p.L293L 0.28 TCGA-ZF-A9RL-01 7 103007950 103007950 G C PSMC2 Missense_Mutation p.R312T 0.21 tolerated(0.26) probably_damaging(0.997) TCGA-ZF-A9RL-01 7 105148620 105148620 C T PUS7 Missense_Mutation p.V114I 0.28 deleterious(0.01) possibly_damaging(0.838) TCGA-ZF-A9RL-01 7 105732365 105732365 C G SYPL1 Missense_Mutation p.M222I 0.28 tolerated(0.06) benign(0.11) TCGA-ZF-A9RL-01 7 116436174 116436174 C G MET Nonsense_Mutation p.S1408* 0.31 TCGA-ZF-A9RL-01 7 121731806 121731806 C A AASS Missense_Mutation p.G656V 0.29 deleterious(0) probably_damaging(0.982) TCGA-ZF-A9RL-01 7 122111491 122111491 G A CADPS2 Silent p.V708V 0.42 TCGA-ZF-A9RL-01 7 123097453 123097453 C T IQUB Silent p.K725K 0.09 TCGA-ZF-A9RL-01 7 124475437 124475437 C T POT1 Silent p.S467S 0.25 TCGA-ZF-A9RL-01 7 129658505 129658505 C G ZC3HC1 Nonstop_Mutation p.*503Sext*17 0.26 TCGA-ZF-A9RL-01 7 129756427 129756427 G A KLHDC10 Nonsense_Mutation p.W132* 0.20 TCGA-ZF-A9RL-01 7 142983989 142983989 G A TMEM139 3'UTR 0.57 TCGA-ZF-A9RL-01 7 143095086 143095086 G A EPHA1 Silent p.V514V 0.19 TCGA-ZF-A9RL-01 7 144150569 144150569 C G TPK1 3'UTR 0.36 TCGA-ZF-A9RL-01 7 148451088 148451088 C G CUL1 Missense_Mutation p.T54S 0.17 deleterious(0.03) possibly_damaging(0.895) TCGA-ZF-A9RL-01 7 5269255 5269255 G C WIPI2 Missense_Mutation p.E380Q 0.36 tolerated(0.26) possibly_damaging(0.536) TCGA-ZF-A9RL-01 7 5269364 5269364 G C WIPI2 Missense_Mutation p.R416T 0.20 tolerated(0.6) benign(0) TCGA-ZF-A9RL-01 7 56007392 56007392 A G ZNF713 Missense_Mutation p.Y329C 0.34 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 7 80439972 80439972 G A SEMA3C Missense_Mutation p.R165C 0.33 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RL-01 7 87514376 87514376 G A DBF4 Missense_Mutation p.R101Q 0.18 tolerated(0.75) benign(0.01) TCGA-ZF-A9RL-01 7 894630 894630 G C SUN1 Missense_Mutation p.R446T 0.06 tolerated(1) benign(0.001) TCGA-ZF-A9RL-01 8 103293664 103293664 G C UBR5 Missense_Mutation p.S1927C 0.14 tolerated(0.07) possibly_damaging(0.804) TCGA-ZF-A9RL-01 8 103293699 103293699 T A UBR5 Silent p.G1915G 0.15 TCGA-ZF-A9RL-01 8 121312970 121312970 G T COL14A1 Splice_Site p.X1439_splice 0.13 TCGA-ZF-A9RL-01 8 125339618 125339618 C G TMEM65 Missense_Mutation p.D132H 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-ZF-A9RL-01 8 134240014 134240014 T C WISP1 3'UTR 0.17 TCGA-ZF-A9RL-01 8 144378545 144378545 G C ZNF696 Missense_Mutation p.E234Q 0.14 deleterious(0) probably_damaging(0.993) TCGA-ZF-A9RL-01 8 144900436 144900436 T C PUF60 Missense_Mutation p.Y177C 0.58 deleterious(0.03) probably_damaging(0.931) TCGA-ZF-A9RL-01 8 144991704 144991704 C T PLEC Silent p.T4232T 0.14 TCGA-ZF-A9RL-01 8 144993062 144993062 C A PLEC Missense_Mutation p.V3780L 0.10 benign(0.13) TCGA-ZF-A9RL-01 8 145010082 145010082 C T PLEC Missense_Mutation p.R316Q 0.07 unknown(0) TCGA-ZF-A9RL-01 8 145010165 145010165 C T PLEC Silent p.V288V 0.09 TCGA-ZF-A9RL-01 8 145772682 145772682 G A ARHGAP39 Silent p.P596P 0.16 TCGA-ZF-A9RL-01 8 20069162 20069162 G A ATP6V1B2 Splice_Site p.X202_splice 0.20 TCGA-ZF-A9RL-01 8 22398300 22398300 G A PPP3CC Silent p.K517K 0.38 TCGA-ZF-A9RL-01 8 22438123 22438123 G A PDLIM2 Silent p.A252A 0.21 TCGA-ZF-A9RL-01 8 26722557 26722557 G A ADRA1A 5'UTR 0.45 TCGA-ZF-A9RL-01 8 38852965 38852965 C G TM2D2 Intron 0.38 TCGA-ZF-A9RL-01 8 52284499 52284499 G A PXDNL Nonsense_Mutation p.Q1279* 0.35 TCGA-ZF-A9RL-01 8 61504457 61504457 G T RAB2A Nonsense_Mutation p.E135* 0.26 TCGA-ZF-A9RL-01 8 87076599 87076599 G A PSKH2 Silent p.L149L 0.21 TCGA-ZF-A9RL-01 8 95384382 95384382 C G RAD54B 3'UTR 0.17 TCGA-ZF-A9RL-01 9 100667174 100667174 C A C9orf156 Silent p.R389R 0.35 TCGA-ZF-A9RL-01 9 100667175 100667175 C A C9orf156 Missense_Mutation p.R389L 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 9 107591392 107591392 C A ABCA1 Missense_Mutation p.M640I 0.21 tolerated(0.07) possibly_damaging(0.507) TCGA-ZF-A9RL-01 9 116153854 116153854 C G ALAD Missense_Mutation p.G72R 0.08 deleterious(0) possibly_damaging(0.789) TCGA-ZF-A9RL-01 9 131375659 131375659 G A SPTAN1 Splice_Site p.X1682_splice 0.82 TCGA-ZF-A9RL-01 9 133506028 133506028 C G FUBP3 Missense_Mutation p.I377M 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RL-01 9 135772892 135772892 C A TSC1 Nonsense_Mutation p.E911* 0.91 TCGA-ZF-A9RL-01 9 32635516 32635516 G C TAF1L Nonsense_Mutation p.S21* 0.72 TCGA-ZF-A9RL-01 9 35957169 35957169 C A OR2S2 Missense_Mutation p.R309S 0.04 deleterious(0.02) benign(0.097) TCGA-ZF-A9RL-01 9 5763392 5763392 C G KIAA1432 Missense_Mutation p.L789V 0.24 deleterious(0) possibly_damaging(0.899) TCGA-ZF-A9RL-01 X 112022306 112022306 C T AMOT Missense_Mutation p.E1026K 0.05 unknown(0) TCGA-ZF-A9RL-01 X 146307349 146307349 C A MIR513A2 RNA 0.05 TCGA-ZF-A9RL-01 X 146307350 146307350 C A MIR513A2 RNA 0.05 TCGA-ZF-A9RL-01 X 1484088 1484088 A G IL3RA Missense_Mutation p.R273G 0.38 deleterious(0) possibly_damaging(0.879) TCGA-ZF-A9RL-01 X 1531718 1531718 C A ASMTL Missense_Mutation p.A518S 0.17 deleterious(0.02) probably_damaging(0.989) TCGA-ZF-A9RL-01 X 153284499 153284499 G C IRAK1 Missense_Mutation p.P156R 0.38 deleterious(0) possibly_damaging(0.774) TCGA-ZF-A9RL-01 X 48547059 48547059 G A WAS Silent p.P314P 0.85 TCGA-ZF-A9RL-01 X 48547079 48547079 G C WAS Missense_Mutation p.R321P 0.36 tolerated(0.17) probably_damaging(0.995) TCGA-ZF-A9RL-01 X 48888996 48888996 C T TFE3 Silent p.Q400Q 0.54 TCGA-ZF-A9RL-01 X 53602629 53602629 C T HUWE1 Missense_Mutation p.D2002N 0.24 benign(0.247) TCGA-ZF-A9RL-01 X 63445342 63445342 G T ASB12 Missense_Mutation p.F63L 0.33 tolerated(0.68) probably_damaging(0.987) TCGA-ZF-A9RL-01 X 7268039 7268039 C A STS Missense_Mutation p.H497N 0.07 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RL-01 X 75396809 75396809 G A PBDC1 Missense_Mutation p.E131K 0.35 deleterious(0.01) probably_damaging(0.981) TCGA-ZF-A9RM-01 10 124399768 124399768 C T DMBT1 Silent p.N2256N 0.39 TCGA-ZF-A9RM-01 10 127505132 127505132 C T UROS Intron 0.48 TCGA-ZF-A9RM-01 11 113628414 113628414 C T ZW10 Missense_Mutation p.V299I 0.38 tolerated(0.18) benign(0.077) TCGA-ZF-A9RM-01 11 118918677 118918677 T C HYOU1 Missense_Mutation p.H831R 0.51 tolerated(0.39) possibly_damaging(0.573) TCGA-ZF-A9RM-01 11 119183299 119183299 G A MCAM Missense_Mutation p.R267C 0.22 deleterious(0.03) probably_damaging(0.954) TCGA-ZF-A9RM-01 11 64537059 64537059 C T SF1 Missense_Mutation p.E293K 0.42 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RM-01 11 64537455 64537455 C G SF1 Missense_Mutation p.G279R 0.42 deleterious(0) probably_damaging(1) TCGA-ZF-A9RM-01 11 67925207 67925207 A G SUV420H1 Missense_Mutation p.I869T 0.55 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RM-01 12 274976 274976 C T IQSEC3 Missense_Mutation p.S964L 0.67 tolerated(0.45) possibly_damaging(0.885) TCGA-ZF-A9RM-01 12 2977901 2977901 G T FOXM1 Missense_Mutation p.P225Q 0.17 tolerated(0.12) benign(0.173) TCGA-ZF-A9RM-01 12 40692965 40692965 A G LRRK2 Silent p.L1134L 0.60 TCGA-ZF-A9RM-01 12 48132526 48132526 T C RAPGEF3 Missense_Mutation p.I825V 0.31 tolerated(0.25) benign(0.297) TCGA-ZF-A9RM-01 12 58190132 58190133 CC - TSFM Frame_Shift_Del p.L270* 0.68 TCGA-ZF-A9RM-01 12 8329976 8329976 G T ZNF705A Missense_Mutation p.G234W 0.52 deleterious(0) possibly_damaging(0.817) TCGA-ZF-A9RM-01 13 21175923 21175923 A G IFT88 Missense_Mutation p.I307V 0.19 tolerated(0.32) benign(0.194) TCGA-ZF-A9RM-01 13 73539538 73539538 G A PIBF1 Missense_Mutation p.V654I 0.10 tolerated(0.33) probably_damaging(0.987) TCGA-ZF-A9RM-01 13 78472324 78472324 T A EDNRB 3'UTR 0.88 TCGA-ZF-A9RM-01 14 102901240 102901240 A G TECPR2 Missense_Mutation p.N696D 0.10 tolerated_low_confidence(0.61) benign(0.001) TCGA-ZF-A9RM-01 14 19553438 19553438 A G POTEG Missense_Mutation p.M8V 0.20 deleterious_low_confidence(0.01) benign(0.017) TCGA-ZF-A9RM-01 14 57698434 57698434 C G EXOC5 Splice_Site p.X313_splice 0.13 TCGA-ZF-A9RM-01 14 59112715 59112715 A T DACT1 Silent p.P458P 0.30 TCGA-ZF-A9RM-01 14 95657940 95657940 G T CLMN Nonsense_Mutation p.C990* 0.10 TCGA-ZF-A9RM-01 14 95669794 95669794 G C CLMN Missense_Mutation p.P631R 0.11 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-ZF-A9RM-01 14 95670021 95670021 A T CLMN Nonsense_Mutation p.Y555* 0.38 TCGA-ZF-A9RM-01 15 24921416 24921416 G A NPAP1 Silent p.A134A 0.34 TCGA-ZF-A9RM-01 15 33990146 33990146 C T RYR3 Silent p.H2066H 0.48 TCGA-ZF-A9RM-01 15 70358416 70358416 G A TLE3 Silent p.L172L 0.27 TCGA-ZF-A9RM-01 15 70991872 70991872 C A UACA Missense_Mutation p.R69I 0.06 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RM-01 16 30715473 30715473 C T SRCAP Missense_Mutation p.P48L 0.33 unknown(0) TCGA-ZF-A9RM-01 16 57608973 57608973 G T GPR114 Silent p.L485L 0.28 TCGA-ZF-A9RM-01 17 37785805 37785805 C G PPP1R1B Missense_Mutation p.S52C 0.20 deleterious(0.04) possibly_damaging(0.855) TCGA-ZF-A9RM-01 17 41847127 41847127 G A DUSP3 Silent p.I136I 0.51 TCGA-ZF-A9RM-01 17 62856914 62856914 G T LRRC37A3 Missense_Mutation p.T1117N 0.04 deleterious(0) benign(0.391) TCGA-ZF-A9RM-01 17 7577105 7577105 G C TP53 Missense_Mutation p.P278R 0.95 deleterious(0) probably_damaging(1) TCGA-ZF-A9RM-01 18 22805631 22805631 C G ZNF521 Missense_Mutation p.V751L 0.29 tolerated(1) benign(0.168) TCGA-ZF-A9RM-01 19 21605785 21605785 A G ZNF493 Missense_Mutation p.I108M 0.48 tolerated(0.11) possibly_damaging(0.838) TCGA-ZF-A9RM-01 19 45810804 45810804 G T CKM Silent p.G294G 0.49 TCGA-ZF-A9RM-01 19 48643225 48643225 T C LIG1 Intron 0.39 TCGA-ZF-A9RM-01 19 55253675 55253675 C T KIR2DL3 Missense_Mutation p.S107F 0.40 tolerated(0.09) probably_damaging(0.967) TCGA-ZF-A9RM-01 1 118624236 118624257 CTCGTTCTACTTCATTCCAGCT - SPAG17 Frame_Shift_Del p.S591Pfs*10 0.30 TCGA-ZF-A9RM-01 1 162749902 162749902 A G DDR2 Missense_Mutation p.T812A 0.07 tolerated(0.06) benign(0.014) TCGA-ZF-A9RM-01 1 186099685 186099685 A C HMCN1 Silent p.P4362P 0.39 TCGA-ZF-A9RM-01 1 201020186 201020186 C T CACNA1S Missense_Mutation p.G1347R 0.40 deleterious(0) probably_damaging(0.988) TCGA-ZF-A9RM-01 1 201926494 201926494 C T TIMM17A Missense_Mutation p.R38C 0.36 deleterious(0) possibly_damaging(0.837) TCGA-ZF-A9RM-01 1 201984374 201984374 G A ELF3 Missense_Mutation p.G347S 0.33 deleterious(0) probably_damaging(0.972) TCGA-ZF-A9RM-01 1 208200474 208200474 C T PLXNA2 3'UTR 0.42 TCGA-ZF-A9RM-01 1 228434442 228434442 A T OBSCN Missense_Mutation p.D1416V 0.35 probably_damaging(1) TCGA-ZF-A9RM-01 1 23636851 23636851 T C HNRNPR 3'UTR 0.49 TCGA-ZF-A9RM-01 1 248343366 248343366 C T OR2M2 Missense_Mutation p.L27F 0.45 deleterious(0.03) benign(0.242) TCGA-ZF-A9RM-01 1 26448508 26448508 C A PDIK1L Missense_Mutation p.H156N 0.04 deleterious(0) probably_damaging(1) TCGA-ZF-A9RM-01 1 55224597 55224597 T A PARS2 Missense_Mutation p.I80F 0.23 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RM-01 1 74621540 74621540 T A LRRIQ3 Missense_Mutation p.Y195F 0.06 tolerated(0.13) benign(0.353) TCGA-ZF-A9RM-01 20 21494155 21494155 G T NKX2-2 Silent p.G51G 0.33 TCGA-ZF-A9RM-01 20 33509215 33509215 G A ACSS2 Missense_Mutation p.V467I 0.36 tolerated(0.19) benign(0.437) TCGA-ZF-A9RM-01 20 6022069 6022069 G A LRRN4 Missense_Mutation p.H608Y 0.16 tolerated(0.25) benign(0.34) TCGA-ZF-A9RM-01 20 62729908 62729908 T C OPRL1 Missense_Mutation p.V290A 0.64 tolerated(0.72) benign(0.007) TCGA-ZF-A9RM-01 22 17265129 17265129 C A XKR3 Missense_Mutation p.A254S 0.07 deleterious(0) probably_damaging(0.918) TCGA-ZF-A9RM-01 22 31738908 31738908 G A PATZ1 Missense_Mutation p.T437I 0.09 deleterious(0) benign(0.04) TCGA-ZF-A9RM-01 22 42464511 42464511 C G NAGA Missense_Mutation p.M28I 0.17 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RM-01 22 50987887 50987887 G A KLHDC7B Missense_Mutation p.R431H 0.56 deleterious(0.02) probably_damaging(0.953) TCGA-ZF-A9RM-01 2 103006643 103006643 T G IL18R1 Nonsense_Mutation p.Y359* 0.53 TCGA-ZF-A9RM-01 2 141114043 141114043 G T LRP1B Missense_Mutation p.P3800T 0.11 possibly_damaging(0.641) TCGA-ZF-A9RM-01 2 165754917 165754917 G A SLC38A11 3'UTR 0.37 TCGA-ZF-A9RM-01 2 206607956 206607956 C T NRP2 Missense_Mutation p.L441F 0.21 tolerated(0.05) possibly_damaging(0.886) TCGA-ZF-A9RM-01 2 210881288 210881288 C G RPE Missense_Mutation p.Q134E 0.34 tolerated(1) benign(0.001) TCGA-ZF-A9RM-01 2 54028857 54028857 G C ERLEC1 Missense_Mutation p.A253P 0.24 tolerated(0.24) benign(0.004) TCGA-ZF-A9RM-01 2 54481977 54481977 A G TSPYL6 3'UTR 0.33 TCGA-ZF-A9RM-01 2 80101302 80101302 G A CTNNA2 Missense_Mutation p.R229H 0.06 deleterious(0.03) possibly_damaging(0.742) TCGA-ZF-A9RM-01 2 85663644 85663644 T C SH2D6 Missense_Mutation p.L156P 0.58 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RM-01 3 100295930 100295930 C G TMEM45A 3'UTR 0.29 TCGA-ZF-A9RM-01 3 150387209 150387209 C G FAM194A Missense_Mutation p.R458P 0.47 tolerated(0.09) probably_damaging(0.954) TCGA-ZF-A9RM-01 3 181430399 181430399 A - SOX2 Frame_Shift_Del p.E84Gfs*19 0.11 TCGA-ZF-A9RM-01 3 184550478 184550478 C G VPS8 Missense_Mutation p.T75S 0.11 tolerated(0.84) benign(0.013) TCGA-ZF-A9RM-01 3 20216138 20216138 T A SGOL1 Missense_Mutation p.K295N 0.07 tolerated(0.15) benign(0.01) TCGA-ZF-A9RM-01 3 48899981 48899981 T A SLC25A20 Missense_Mutation p.M177L 0.22 tolerated(1) benign(0.001) TCGA-ZF-A9RM-01 3 49412941 49412941 C A RHOA Missense_Mutation p.D28Y 0.26 deleterious(0.01) possibly_damaging(0.823) TCGA-ZF-A9RM-01 3 95374340 95374340 G A MTHFD2P1 RNA 0.31 TCGA-ZF-A9RM-01 4 114195742 114195742 G C ANK2 Missense_Mutation p.E540D 0.23 possibly_damaging(0.903) TCGA-ZF-A9RM-01 4 13602906 13602906 C T BOD1L1 Missense_Mutation p.S1873N 0.23 probably_damaging(0.998) TCGA-ZF-A9RM-01 4 155278371 155278371 T A DCHS2 Missense_Mutation p.K267M 0.04 tolerated(0.25) benign(0.018) TCGA-ZF-A9RM-01 4 155458437 155458437 C A PLRG1 Splice_Site p.X495_splice 0.47 TCGA-ZF-A9RM-01 4 38691479 38691479 C T KLF3 Missense_Mutation p.P225L 0.42 tolerated(0.19) benign(0.013) TCGA-ZF-A9RM-01 4 70898969 70898969 A G HTN3 Intron 0.33 TCGA-ZF-A9RM-01 5 11346541 11346541 G A CTNND2 Missense_Mutation p.P524L 0.48 tolerated(0.08) benign(0.025) TCGA-ZF-A9RM-01 5 140433441 140433441 C A PCDHB1 Missense_Mutation p.P796T 0.22 tolerated(0.25) benign(0.099) TCGA-ZF-A9RM-01 5 140730190 140730190 A G PCDHGB1 Silent p.Q121Q 0.07 TCGA-ZF-A9RM-01 5 140865370 140865370 G A PCDHGC4 Silent p.L210L 0.65 TCGA-ZF-A9RM-01 5 145252241 145252241 T G GRXCR2 Silent p.A97A 0.08 TCGA-ZF-A9RM-01 5 149578798 149578798 G A SLC6A7 Missense_Mutation p.V198I 0.32 deleterious(0.01) probably_damaging(0.959) TCGA-ZF-A9RM-01 5 150712821 150712821 G A SLC36A2 Silent p.F269F 0.30 TCGA-ZF-A9RM-01 5 176011809 176011809 G T CDHR2 Nonsense_Mutation p.E843* 0.06 TCGA-ZF-A9RM-01 5 38904526 38904526 G A OSMR Silent p.A402A 0.12 TCGA-ZF-A9RM-01 5 43293062 43293062 A T HMGCS1 Missense_Mutation p.D399E 0.04 tolerated(1) benign(0) TCGA-ZF-A9RM-01 5 83402613 83402613 T C EDIL3 Missense_Mutation p.I169V 0.56 tolerated(0.1) benign(0.003) TCGA-ZF-A9RM-01 5 90046431 90046431 C T GPR98 Missense_Mutation p.R3680C 0.26 probably_damaging(0.973) TCGA-ZF-A9RM-01 6 146625874 146625874 G C GRM1 Missense_Mutation p.D360H 0.06 tolerated(0.08) benign(0.209) TCGA-ZF-A9RM-01 6 168319521 168319521 C T MLLT4 Missense_Mutation p.P932L 0.48 deleterious(0) probably_damaging(1) TCGA-ZF-A9RM-01 6 29323384 29323384 A C OR5V1 Missense_Mutation p.L197V 0.52 tolerated(0.34) benign(0.015) TCGA-ZF-A9RM-01 6 43191839 43191839 C T CUL9 Missense_Mutation p.R2431W 0.44 deleterious(0) possibly_damaging(0.609) TCGA-ZF-A9RM-01 7 105207606 105207606 T G RINT1 Missense_Mutation p.S743A 0.06 deleterious(0.02) benign(0.4) TCGA-ZF-A9RM-01 7 1132273 1132273 C T GPER1 Silent p.P303P 0.05 TCGA-ZF-A9RM-01 7 14188715 14188715 A T DGKB 3'UTR 0.18 TCGA-ZF-A9RM-01 7 21723422 21723422 T C DNAH11 Silent p.F1834F 0.45 TCGA-ZF-A9RM-01 7 28610119 28610119 T A CREB5 Missense_Mutation p.V143D 0.25 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RM-01 7 45719327 45719327 C T ADCY1 Silent p.L640L 0.21 TCGA-ZF-A9RM-01 7 50771572 50771572 C A GRB10 Missense_Mutation p.D29Y 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.629) TCGA-ZF-A9RM-01 8 101016294 101016294 T C RGS22 Silent p.L829L 0.06 TCGA-ZF-A9RM-01 8 37756913 37756913 G A RAB11FIP1 Missense_Mutation p.S16F 0.20 tolerated(0.5) possibly_damaging(0.606) TCGA-ZF-A9RM-01 8 95539414 95539414 C G KIAA1429 Missense_Mutation p.C353S 0.06 tolerated(0.81) benign(0.005) TCGA-ZF-A9RM-01 9 18777276 18777276 C T ADAMTSL1 Missense_Mutation p.P1017S 0.59 tolerated(0.44) benign(0.007) TCGA-ZF-A9RM-01 9 19376266 19376269 TTAT - RPS6 3'UTR 0.57 TCGA-ZF-A9RM-01 9 69423523 69423523 G A ANKRD20A4 Missense_Mutation p.E607K 0.42 deleterious(0.04) benign(0.097) TCGA-ZF-A9RM-01 9 99522207 99522207 G A ZNF510 Missense_Mutation p.T302I 0.42 tolerated(0.14) benign(0.005) TCGA-ZF-A9RM-01 X 10046915 10046915 G A WWC3 Silent p.R99R 0.20 TCGA-ZF-A9RM-01 X 15332671 15332671 C T ASB11 Intron 0.13 TCGA-ZF-A9RM-01 X 73047240 73047240 G A XIST RNA 0.85 TCGA-ZF-A9RN-01 10 105048340 105048340 G C INA Missense_Mutation p.E472Q 0.29 deleterious(0.01) possibly_damaging(0.886) TCGA-ZF-A9RN-01 10 105048381 105048381 G A INA Silent p.E485E 0.27 TCGA-ZF-A9RN-01 10 26500945 26500945 G C MYO3A 3'UTR 0.22 TCGA-ZF-A9RN-01 10 27324309 27324309 C T ANKRD26 Missense_Mutation p.E1024K 0.26 deleterious(0) benign(0.054) TCGA-ZF-A9RN-01 10 32197750 32197750 G A ARHGAP12 Missense_Mutation p.P12S 0.63 tolerated_low_confidence(0.1) benign(0.006) TCGA-ZF-A9RN-01 10 55780086 55780086 C G PCDH15 Missense_Mutation p.E873Q 0.37 tolerated(0.11) benign(0.084) TCGA-ZF-A9RN-01 10 75435087 75435087 G A AGAP5 Missense_Mutation p.A444V 0.32 deleterious(0.01) possibly_damaging(0.459) TCGA-ZF-A9RN-01 10 97917738 97917738 G T ZNF518A RNA 0.27 TCGA-ZF-A9RN-01 11 1016687 1016687 G C MUC6 Missense_Mutation p.I2038M 0.05 probably_damaging(0.983) TCGA-ZF-A9RN-01 11 36300114 36300114 G C COMMD9 Missense_Mutation p.S77C 0.45 deleterious(0) possibly_damaging(0.8) TCGA-ZF-A9RN-01 11 47266901 47266901 C T ACP2 Silent p.L198L 0.34 TCGA-ZF-A9RN-01 11 63057902 63057902 C T SLC22A10 Missense_Mutation p.R89C 0.51 deleterious(0.01) benign(0.301) TCGA-ZF-A9RN-01 11 6638990 6638990 C G TPP1 Missense_Mutation p.E83Q 0.31 tolerated(0.07) benign(0.05) TCGA-ZF-A9RN-01 11 76063816 76063816 T C PRKRIR Silent p.E126E 0.41 TCGA-ZF-A9RN-01 11 76246939 76246939 A G C11orf30 Missense_Mutation p.D732G 0.20 deleterious(0.03) probably_damaging(0.956) TCGA-ZF-A9RN-01 11 76261237 76261237 G A C11orf30 3'UTR 0.50 TCGA-ZF-A9RN-01 11 76830153 76830153 G T CAPN5 Silent p.R415R 0.31 TCGA-ZF-A9RN-01 11 86111823 86111823 G A CCDC81 Silent p.G287G 0.31 TCGA-ZF-A9RN-01 11 8739391 8739391 C T ST5 Missense_Mutation p.R509Q 0.27 deleterious(0.03) possibly_damaging(0.76) TCGA-ZF-A9RN-01 12 103352303 103352303 C A ASCL1 Missense_Mutation p.P94H 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RN-01 12 113733932 113733932 C T TPCN1 3'UTR 0.52 TCGA-ZF-A9RN-01 12 122295275 122295275 C T HPD Missense_Mutation p.G53S 0.50 deleterious(0) probably_damaging(0.916) TCGA-ZF-A9RN-01 12 25236370 25236370 T C LRMP Silent p.A86A 0.09 TCGA-ZF-A9RN-01 12 26383790 26383790 G A SSPN Silent p.P171P 0.06 TCGA-ZF-A9RN-01 12 32908665 32908665 G C YARS2 Missense_Mutation p.F48L 0.44 tolerated(0.39) benign(0.012) TCGA-ZF-A9RN-01 12 32908747 32908747 G C YARS2 Nonsense_Mutation p.S21* 0.33 TCGA-ZF-A9RN-01 12 49230467 49230467 C T DDX23 Missense_Mutation p.R374H 0.25 deleterious(0) probably_damaging(0.97) TCGA-ZF-A9RN-01 12 52408966 52408966 G A GRASP Missense_Mutation p.E391K 0.18 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RN-01 12 55725743 55725743 A T OR6C3 Nonsense_Mutation p.K87* 0.26 TCGA-ZF-A9RN-01 12 56537710 56537710 C G ESYT1 3'UTR 0.42 TCGA-ZF-A9RN-01 12 57464502 57464502 C G TMEM194A Missense_Mutation p.E143Q 0.38 tolerated(0.51) benign(0.076) TCGA-ZF-A9RN-01 12 66935686 66935686 C A GRIP1 Missense_Mutation p.G61C 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RN-01 12 72667206 72667206 C G TRHDE Silent p.V216V 0.23 TCGA-ZF-A9RN-01 12 75889386 75889386 G C GLIPR1 Missense_Mutation p.R188T 0.43 tolerated(0.72) benign(0) TCGA-ZF-A9RN-01 13 107862948 107862948 G T FAM155A Silent p.S357S 0.38 TCGA-ZF-A9RN-01 13 52854017 52854017 G A RP11-248G5.8 RNA 0.27 TCGA-ZF-A9RN-01 13 96506730 96506730 C G UGGT2 Splice_Site p.X1337_splice 0.22 TCGA-ZF-A9RN-01 14 105239648 105239648 C G AKT1 Silent p.G299G 0.44 TCGA-ZF-A9RN-01 14 20586216 20586216 G C OR4K17 Missense_Mutation p.K217N 0.41 deleterious(0.01) benign(0.331) TCGA-ZF-A9RN-01 14 24793385 24793385 G - ADCY4 Frame_Shift_Del p.K644Rfs*19 0.29 TCGA-ZF-A9RN-01 14 68191897 68191897 C G RDH12 Missense_Mutation p.S90C 0.32 deleterious(0.03) probably_damaging(0.935) TCGA-ZF-A9RN-01 14 78217738 78217738 G A SNW1 Missense_Mutation p.A85V 0.36 tolerated(0.15) benign(0.035) TCGA-ZF-A9RN-01 15 20657767 20657767 G A HERC2P3 RNA 0.57 TCGA-ZF-A9RN-01 15 22840333 22840333 A G TUBGCP5 Silent p.K133K 0.55 TCGA-ZF-A9RN-01 15 28525375 28525375 G A HERC2 Silent p.A127A 0.37 TCGA-ZF-A9RN-01 15 34016339 34016339 C G RYR3 Missense_Mutation p.L2292V 0.32 probably_damaging(0.998) TCGA-ZF-A9RN-01 15 35275671 35275671 G C ZNF770 5'UTR 0.25 TCGA-ZF-A9RN-01 16 19559276 19559276 G C CCP110 Splice_Site p.X947_splice 0.41 TCGA-ZF-A9RN-01 16 31045559 31045559 C A STX4 Silent p.R49R 0.36 TCGA-ZF-A9RN-01 16 3788650 3788650 T C CREBBP Missense_Mutation p.D1435G 0.69 unknown(0) TCGA-ZF-A9RN-01 16 56868057 56868057 G A NUP93 Missense_Mutation p.D519N 0.39 deleterious(0.03) probably_damaging(0.917) TCGA-ZF-A9RN-01 16 67995562 67995562 G C SLC12A4 Silent p.L88L 0.91 TCGA-ZF-A9RN-01 16 70284999 70284999 C A EXOSC6 Missense_Mutation p.A269S 0.50 tolerated_low_confidence(0.76) unknown(0) TCGA-ZF-A9RN-01 16 70301614 70301614 A G AARS Silent p.R390R 0.43 TCGA-ZF-A9RN-01 16 71571339 71571339 G A CHST4 Silent p.Q253Q 0.57 TCGA-ZF-A9RN-01 16 89629387 89629387 C G RPL13 Silent p.L191L 0.87 TCGA-ZF-A9RN-01 16 89774289 89774289 G A VPS9D1 Missense_Mutation p.R626W 0.36 deleterious(0) possibly_damaging(0.733) TCGA-ZF-A9RN-01 17 10209920 10209920 C G MYH13 Missense_Mutation p.K1774N 0.30 deleterious(0) probably_damaging(0.997) TCGA-ZF-A9RN-01 17 10406195 10406195 C T MYH1 Missense_Mutation p.E991K 0.26 deleterious(0) possibly_damaging(0.701) TCGA-ZF-A9RN-01 17 2265479 2265479 C T SGSM2 Nonsense_Mutation p.Q125* 0.14 TCGA-ZF-A9RN-01 17 27023921 27023921 G A SUPT6H Missense_Mutation p.E1344K 0.21 deleterious(0.05) possibly_damaging(0.758) TCGA-ZF-A9RN-01 17 27421758 27421758 G T MYO18A Silent p.V1540V 0.58 TCGA-ZF-A9RN-01 17 41907061 41907061 C G MPP3 Silent p.S134S 0.22 TCGA-ZF-A9RN-01 17 42230004 42230004 G A C17orf53 Splice_Site p.X437_splice 0.31 TCGA-ZF-A9RN-01 17 42230048 42230048 G A C17orf53 Missense_Mutation p.R451Q 0.25 tolerated(0.13) benign(0.007) TCGA-ZF-A9RN-01 17 42230091 42230091 G A C17orf53 Silent p.E465E 0.26 TCGA-ZF-A9RN-01 17 42478195 42478195 C G GPATCH8 Missense_Mutation p.S417T 0.24 tolerated(1) benign(0.064) TCGA-ZF-A9RN-01 17 45894223 45894223 C A OSBPL7 Nonsense_Mutation p.E240* 0.28 TCGA-ZF-A9RN-01 17 48627416 48627416 G A SPATA20 Silent p.Q311Q 0.60 TCGA-ZF-A9RN-01 17 50235201 50235201 G A CA10 5'UTR 0.33 TCGA-ZF-A9RN-01 17 53491515 53491515 G A MMD Silent p.H35H 0.26 TCGA-ZF-A9RN-01 17 56400352 56400352 C A BZRAP1 Nonsense_Mutation p.E385* 0.29 TCGA-ZF-A9RN-01 17 57771260 57771260 G A CLTC 3'UTR 0.10 TCGA-ZF-A9RN-01 17 62254703 62254703 C T TEX2 Missense_Mutation p.M858I 0.23 deleterious(0.04) possibly_damaging(0.713) TCGA-ZF-A9RN-01 17 63554240 63554240 C G AXIN2 Missense_Mutation p.D167H 0.54 deleterious(0) probably_damaging(0.97) TCGA-ZF-A9RN-01 17 63554379 63554379 C A AXIN2 Missense_Mutation p.M120I 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-A9RN-01 17 72815897 72815897 C T TMEM104 Silent p.F215F 0.34 TCGA-ZF-A9RN-01 17 73774560 73774560 G C H3F3B 3'UTR 0.50 TCGA-ZF-A9RN-01 17 7574021 7574021 C A TP53 Nonsense_Mutation p.E336* 0.77 TCGA-ZF-A9RN-01 17 76676294 76676294 C G CYTH1 Missense_Mutation p.E366Q 0.59 tolerated(0.14) benign(0.007) TCGA-ZF-A9RN-01 18 19997644 19997644 C G CTAGE1 Missense_Mutation p.R44T 0.28 deleterious(0) probably_damaging(0.972) TCGA-ZF-A9RN-01 18 2743850 2743850 C G SMCHD1 Missense_Mutation p.S1242C 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-ZF-A9RN-01 18 2928621 2928621 T A LPIN2 Missense_Mutation p.S530C 0.25 tolerated(0.13) benign(0.126) TCGA-ZF-A9RN-01 18 32823181 32823181 A T ZNF397 Missense_Mutation p.Q160H 0.25 tolerated(0.08) benign(0.004) TCGA-ZF-A9RN-01 18 55143772 55143772 C T ONECUT2 Silent p.I444I 0.56 TCGA-ZF-A9RN-01 18 56246940 56246941 - A ALPK2 Frame_Shift_Ins p.L356Ffs*6 0.25 TCGA-ZF-A9RN-01 19 11598656 11598656 C G ZNF653 Missense_Mutation p.E208Q 0.17 tolerated(0.12) benign(0.369) TCGA-ZF-A9RN-01 19 12090907 12090907 C G ZNF763 3'UTR 0.11 TCGA-ZF-A9RN-01 19 17988654 17988654 C T SLC5A5 Missense_Mutation p.T274I 0.30 deleterious(0) probably_damaging(0.968) TCGA-ZF-A9RN-01 19 18433852 18433852 C T LSM4 5'UTR 0.33 TCGA-ZF-A9RN-01 19 18727876 18727876 C A TMEM59L Silent p.R210R 0.34 TCGA-ZF-A9RN-01 19 36221296 36221296 C T KMT2B Silent p.F1710F 0.06 TCGA-ZF-A9RN-01 19 40842073 40842073 T C C19orf47 Missense_Mutation p.T93A 0.31 deleterious(0.02) possibly_damaging(0.495) TCGA-ZF-A9RN-01 19 41083150 41083150 C G SHKBP1 Missense_Mutation p.R34G 0.21 deleterious(0) probably_damaging(0.969) TCGA-ZF-A9RN-01 19 43411978 43411978 G C PSG6 Missense_Mutation p.I245M 0.06 tolerated(0.22) possibly_damaging(0.866) TCGA-ZF-A9RN-01 19 43689045 43689045 G T PSG5 Missense_Mutation p.L107M 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 19 44222934 44222934 G A IRGC Missense_Mutation p.R75H 0.33 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RN-01 19 50200673 50200673 G C CPT1C Missense_Mutation p.D78H 0.29 tolerated(0.05) probably_damaging(0.94) TCGA-ZF-A9RN-01 19 57325246 57325246 C A PEG3 Nonsense_Mutation p.E1522* 0.25 TCGA-ZF-A9RN-01 19 58199365 58199365 C G ZNF551 Silent p.L574L 0.31 TCGA-ZF-A9RN-01 19 58213424 58213424 G A ZNF154 Missense_Mutation p.S298F 0.09 deleterious(0) possibly_damaging(0.898) TCGA-ZF-A9RN-01 19 58983384 58983384 G A ZNF324 Missense_Mutation p.V509I 0.18 tolerated_low_confidence(0.38) benign(0.017) TCGA-ZF-A9RN-01 19 6182806 6182806 C A ACSBG2 Missense_Mutation p.F317L 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-ZF-A9RN-01 19 9268013 9268013 C G ZNF317 Missense_Mutation p.Q78E 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-ZF-A9RN-01 1 118441780 118441780 C T GDAP2 Missense_Mutation p.R232Q 0.83 tolerated(0.31) benign(0) TCGA-ZF-A9RN-01 1 151991000 151991000 C G NBPF18P RNA 0.33 TCGA-ZF-A9RN-01 1 152280593 152280593 C G FLG Missense_Mutation p.E2257Q 0.22 benign(0.403) TCGA-ZF-A9RN-01 1 161144881 161144881 G A B4GALT3 Missense_Mutation p.H131Y 0.17 tolerated(0.61) benign(0.016) TCGA-ZF-A9RN-01 1 166963285 166963285 C T MAEL Nonsense_Mutation p.R168* 0.44 TCGA-ZF-A9RN-01 1 172501623 172501623 T G SUCO 5'Flank 0.55 TCGA-ZF-A9RN-01 1 185834930 185834930 T A HMCN1 Missense_Mutation p.Y186N 0.20 possibly_damaging(0.881) TCGA-ZF-A9RN-01 1 203024736 203024736 C G PPFIA4 Missense_Mutation p.S163C 0.33 deleterious(0) possibly_damaging(0.841) TCGA-ZF-A9RN-01 1 203149636 203149636 G A CHI3L1 Missense_Mutation p.R286W 0.23 deleterious(0) benign(0.018) TCGA-ZF-A9RN-01 1 20991117 20991117 C G KIF17 Missense_Mutation p.R1017P 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RN-01 1 214546153 214546153 G A PTPN14 Silent p.Y979Y 0.17 TCGA-ZF-A9RN-01 1 22161405 22161405 G T HSPG2 Missense_Mutation p.S3496Y 0.27 probably_damaging(0.918) TCGA-ZF-A9RN-01 1 228462097 228462097 G A OBSCN Missense_Mutation p.V2254M 0.89 possibly_damaging(0.908) TCGA-ZF-A9RN-01 1 243480113 243480113 C G SDCCAG8 Missense_Mutation p.T329R 0.27 tolerated(0.06) benign(0.281) TCGA-ZF-A9RN-01 1 249150752 249150752 G C ZNF692 Missense_Mutation p.S167C 0.10 tolerated(0.17) benign(0.006) TCGA-ZF-A9RN-01 1 27685103 27685103 C G MAP3K6 Splice_Site p.X862_splice 0.28 TCGA-ZF-A9RN-01 1 57169898 57169898 C G PRKAA2 Missense_Mutation p.S348C 0.34 tolerated(0.05) benign(0.195) TCGA-ZF-A9RN-01 20 1638372 1638372 C T SIRPG 5'UTR 0.28 TCGA-ZF-A9RN-01 20 17968833 17968833 G C MGME1 Missense_Mutation p.W252C 0.49 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 20 32346562 32346562 C T ZNF341 Silent p.Y319Y 0.25 TCGA-ZF-A9RN-01 20 33345756 33345756 T C NCOA6 Silent p.Q265Q 0.24 TCGA-ZF-A9RN-01 20 60584123 60584123 G A TAF4 Silent p.L623L 0.18 TCGA-ZF-A9RN-01 21 30927370 30927370 C T GRIK1 Intron 0.32 TCGA-ZF-A9RN-01 21 44520596 44520596 G C U2AF1 Missense_Mutation p.Q56E 0.35 tolerated(0.79) benign(0.039) TCGA-ZF-A9RN-01 21 45499950 45499950 G C TRAPPC10 Missense_Mutation p.E555D 0.21 tolerated(0.38) benign(0.414) TCGA-ZF-A9RN-01 22 32792233 32792233 G A RTCB Missense_Mutation p.A273V 0.05 tolerated(0.22) possibly_damaging(0.733) TCGA-ZF-A9RN-01 22 38109344 38109344 G C TRIOBP Missense_Mutation p.E128Q 0.04 tolerated_low_confidence(0.21) benign(0.004) TCGA-ZF-A9RN-01 22 42524798 42524798 G T CYP2D6 Silent p.G218G 0.92 TCGA-ZF-A9RN-01 2 141806708 141806708 C G LRP1B Missense_Mutation p.D546H 0.44 possibly_damaging(0.861) TCGA-ZF-A9RN-01 2 170502583 170502583 C G CCDC173 Missense_Mutation p.R476T 0.26 deleterious(0.01) benign(0.056) TCGA-ZF-A9RN-01 2 179454900 179454900 C G TTN Missense_Mutation p.V20518L 0.31 TCGA-ZF-A9RN-01 2 183011763 183011763 C T PDE1A Intron 0.33 TCGA-ZF-A9RN-01 2 183989116 183989116 T C NUP35 5'UTR 0.54 TCGA-ZF-A9RN-01 2 188245282 188245282 T G CALCRL Missense_Mutation p.Q107P 0.44 tolerated(0.41) benign(0) TCGA-ZF-A9RN-01 2 206587351 206587351 G A NRP2 Missense_Mutation p.D195N 0.30 deleterious(0.05) probably_damaging(0.997) TCGA-ZF-A9RN-01 2 21229722 21229722 C G APOB Missense_Mutation p.D3340H 0.16 probably_damaging(0.98) TCGA-ZF-A9RN-01 2 215809796 215809796 C T ABCA12 Silent p.S2424S 0.48 TCGA-ZF-A9RN-01 2 223339442 223339442 G T SGPP2 Missense_Mutation p.W125C 0.25 deleterious(0) probably_damaging(0.992) TCGA-ZF-A9RN-01 2 228157946 228157946 G A COL4A3 Missense_Mutation p.E1084K 0.27 unknown(0) TCGA-ZF-A9RN-01 2 238280860 238280860 T C COL6A3 Missense_Mutation p.D1267G 0.37 probably_damaging(0.994) TCGA-ZF-A9RN-01 2 3482678 3482678 T G TRAPPC12 Missense_Mutation p.L647V 0.20 tolerated(0.12) possibly_damaging(0.53) TCGA-ZF-A9RN-01 2 43958673 43958673 G C PLEKHH2 Missense_Mutation p.G959R 0.16 deleterious(0) possibly_damaging(0.836) TCGA-ZF-A9RN-01 2 62449954 62449954 T C B3GNT2 Missense_Mutation p.F200S 0.22 tolerated(0.38) possibly_damaging(0.45) TCGA-ZF-A9RN-01 2 69204645 69204645 C G GKN1 Missense_Mutation p.L25V 0.35 deleterious(0.05) benign(0.181) TCGA-ZF-A9RN-01 2 85808996 85808996 G A VAMP8 3'UTR 0.50 TCGA-ZF-A9RN-01 2 89265952 89265952 C T IGKV1-6 Silent p.Q60Q 0.30 TCGA-ZF-A9RN-01 3 100432568 100432568 C G TFG Missense_Mutation p.I13M 0.03 deleterious(0) probably_damaging(0.996) TCGA-ZF-A9RN-01 3 108308158 108308158 G A KIAA1524 Missense_Mutation p.S22L 0.17 deleterious(0) possibly_damaging(0.506) TCGA-ZF-A9RN-01 3 108363559 108363559 C T DZIP3 Nonsense_Mutation p.Q564* 0.19 TCGA-ZF-A9RN-01 3 112326041 112326041 C G CCDC80 Missense_Mutation p.E830Q 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-ZF-A9RN-01 3 119434462 119434462 C G MAATS1 Nonsense_Mutation p.S185* 0.26 TCGA-ZF-A9RN-01 3 134977963 134977963 G A EPHB1 3'UTR 0.30 TCGA-ZF-A9RN-01 3 142537078 142537078 C G PCOLCE2 3'UTR 0.18 TCGA-ZF-A9RN-01 3 164766974 164766974 C A SI Missense_Mutation p.W552C 0.17 deleterious(0.01) possibly_damaging(0.831) TCGA-ZF-A9RN-01 3 180320991 180320991 T A TTC14 Missense_Mutation p.D122E 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-ZF-A9RN-01 3 197427729 197427729 C A KIAA0226 Missense_Mutation p.C339F 0.22 deleterious(0.04) benign(0.321) TCGA-ZF-A9RN-01 3 38350536 38350536 C T SLC22A14 Silent p.I289I 0.38 TCGA-ZF-A9RN-01 3 58271096 58271096 C G ABHD6 Silent p.V251V 0.22 TCGA-ZF-A9RN-01 3 69104646 69104646 G A UBA3 Missense_Mutation p.A445V 0.59 tolerated(0.69) benign(0.019) TCGA-ZF-A9RN-01 4 118006244 118006244 C A TRAM1L1 Missense_Mutation p.L102F 0.41 deleterious(0) probably_damaging(0.944) TCGA-ZF-A9RN-01 4 123184656 123184656 G T KIAA1109 Missense_Mutation p.V2348L 0.15 probably_damaging(0.986) TCGA-ZF-A9RN-01 4 123342482 123342482 T C ADAD1 Silent p.F518F 0.18 TCGA-ZF-A9RN-01 4 1389077 1389077 G A CRIPAK Missense_Mutation p.A260T 0.62 tolerated(0.33) probably_damaging(0.982) TCGA-ZF-A9RN-01 4 144141657 144141657 G C USP38 3'UTR 0.89 TCGA-ZF-A9RN-01 4 146859572 146859572 C G ZNF827 5'UTR 0.23 TCGA-ZF-A9RN-01 4 156634301 156634301 T C GUCY1A3 Silent p.L380L 0.44 TCGA-ZF-A9RN-01 4 159573102 159573102 G T RXFP1 Missense_Mutation p.W723C 0.85 deleterious(0) probably_damaging(0.984) TCGA-ZF-A9RN-01 4 178243665 178243665 G A NEIL3 Missense_Mutation p.G70E 0.25 deleterious(0) probably_damaging(0.978) TCGA-ZF-A9RN-01 4 17887745 17887745 A C LCORL Missense_Mutation p.I241R 0.18 tolerated(0.54) benign(0.014) TCGA-ZF-A9RN-01 4 185012345 185012345 G C ENPP6 Silent p.L436L 0.08 TCGA-ZF-A9RN-01 4 187549443 187549443 C T FAT1 Missense_Mutation p.A1559T 0.21 benign(0.055) TCGA-ZF-A9RN-01 4 188924059 188924059 G T ZFP42 Missense_Mutation p.S33I 0.33 tolerated(0.06) benign(0.078) TCGA-ZF-A9RN-01 4 25146650 25146650 G A SEPSECS Nonsense_Mutation p.Q304* 0.23 TCGA-ZF-A9RN-01 4 3240328 3240328 G A HTT Missense_Mutation p.V3016M 0.61 probably_damaging(0.969) TCGA-ZF-A9RN-01 4 53579432 53579432 G C SNORA26 RNA 0.26 TCGA-ZF-A9RN-01 4 59429 59429 A T ZNF595 Missense_Mutation p.Y37F 0.04 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-ZF-A9RN-01 5 1057623 1057624 - A SLC12A7 Frame_Shift_Ins p.S997* 0.24 TCGA-ZF-A9RN-01 5 126784811 126784811 T G MEGF10 Missense_Mutation p.F959L 0.42 tolerated(0.11) benign(0.001) TCGA-ZF-A9RN-01 5 138362489 138362489 C G SIL1 Splice_Site p.X215_splice 0.43 TCGA-ZF-A9RN-01 5 140580724 140580724 C T PCDHB11 Silent p.F459F 0.34 TCGA-ZF-A9RN-01 5 169138967 169138967 G A DOCK2 Missense_Mutation p.R504K 0.31 tolerated(0.16) benign(0.004) TCGA-ZF-A9RN-01 5 179260685 179260685 A G SQSTM1 Silent p.L356L 0.41 TCGA-ZF-A9RN-01 5 23527209 23527209 G A PRDM9 Missense_Mutation p.R671Q 0.16 tolerated(0.27) probably_damaging(0.994) TCGA-ZF-A9RN-01 5 36049257 36049257 C G UGT3A2 Missense_Mutation p.D193H 0.21 deleterious(0.02) probably_damaging(0.983) TCGA-ZF-A9RN-01 5 41794171 41794171 G C OXCT1 Silent p.V394V 0.04 TCGA-ZF-A9RN-01 5 50685631 50685631 G T ISL1 Missense_Mutation p.M210I 0.50 deleterious(0.01) possibly_damaging(0.595) TCGA-ZF-A9RN-01 5 68737416 68737416 C T MARVELD2 Missense_Mutation p.H538Y 0.42 tolerated(0.07) possibly_damaging(0.562) TCGA-ZF-A9RN-01 5 916041 916041 C T TRIP13 Missense_Mutation p.R386W 0.25 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 6 106967051 106967051 G C AIM1 Missense_Mutation p.K248N 0.24 deleterious(0) probably_damaging(0.999) TCGA-ZF-A9RN-01 6 136594323 136594323 G A BCLAF1 Nonsense_Mutation p.Q619* 0.21 TCGA-ZF-A9RN-01 6 167796307 167796307 C T TCP10 Missense_Mutation p.E19K 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-ZF-A9RN-01 6 26124046 26124046 C T HIST1H2BC Silent p.K29K 0.21 TCGA-ZF-A9RN-01 6 26545615 26545615 G A HMGN4 Missense_Mutation p.D61N 0.34 tolerated(0.09) benign(0.126) TCGA-ZF-A9RN-01 6 30458998 30458998 C T HLA-E Missense_Mutation p.A232V 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.86) TCGA-ZF-A9RN-01 6 40400285 40400285 C T LRFN2 Missense_Mutation p.E190K 0.11 tolerated(0.11) possibly_damaging(0.771) TCGA-ZF-A9RN-01 6 49986803 49986803 A G DEFB110 Silent p.L31L 0.20 TCGA-ZF-A9RN-01 6 56392509 56392509 C G DST Missense_Mutation p.D3279H 0.32 probably_damaging(0.967) TCGA-ZF-A9RN-01 6 63990550 63990550 G A LGSN Silent p.F302F 0.26 TCGA-ZF-A9RN-01 6 70608902 70608902 C A COL19A1 Missense_Mutation p.L52I 0.26 tolerated(0.22) unknown(0) TCGA-ZF-A9RN-01 6 70964216 70964216 G C COL9A1 Missense_Mutation p.P561R 0.17 possibly_damaging(0.901) TCGA-ZF-A9RN-01 6 75866132 75866132 G A COL12A1 Missense_Mutation p.R1031C 0.24 probably_damaging(0.939) TCGA-ZF-A9RN-01 6 82883150 82883150 G C IBTK Missense_Mutation p.S1244C 0.09 deleterious(0.03) possibly_damaging(0.469) TCGA-ZF-A9RN-01 6 86227732 86227732 C G SNX14 Missense_Mutation p.M714I 0.18 tolerated(0.76) benign(0) TCGA-ZF-A9RN-01 7 111398779 111398779 C A DOCK4 Silent p.P1401P 0.20 TCGA-ZF-A9RN-01 7 133884047 133884047 G A LRGUK Missense_Mutation p.E541K 0.30 tolerated(0.15) probably_damaging(0.995) TCGA-ZF-A9RN-01 7 136700911 136700911 C A CHRM2 Missense_Mutation p.S433R 0.41 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 7 142627456 142627456 C T TRPV5 Missense_Mutation p.V72I 0.36 tolerated(1) benign(0.001) TCGA-ZF-A9RN-01 7 143806804 143806804 C A OR2A2 Silent p.V43V 0.40 TCGA-ZF-A9RN-01 7 1482091 1482091 C G MICALL2 Missense_Mutation p.S483T 0.16 tolerated(0.52) benign(0.072) TCGA-ZF-A9RN-01 7 151860219 151860219 C T KMT2C Silent p.Q3481Q 0.31 TCGA-ZF-A9RN-01 7 47886602 47886602 T C PKD1L1 Silent p.L1676L 0.27 TCGA-ZF-A9RN-01 7 48313878 48313878 C A ABCA13 Missense_Mutation p.Q1539K 0.64 benign(0.164) TCGA-ZF-A9RN-01 7 50121395 50121395 A G ZPBP Silent p.Y103Y 0.53 TCGA-ZF-A9RN-01 7 75616574 75616574 G C POR 3'Flank 0.33 TCGA-ZF-A9RN-01 7 84636119 84636119 T C SEMA3D Missense_Mutation p.E636G 0.24 deleterious(0) probably_damaging(0.938) TCGA-ZF-A9RN-01 7 90895249 90895249 G A FZD1 Missense_Mutation p.E352K 0.16 deleterious(0) probably_damaging(0.998) TCGA-ZF-A9RN-01 8 119634117 119634117 C A SAMD12 5'UTR 0.74 TCGA-ZF-A9RN-01 8 125131850 125131850 G A FER1L6 Missense_Mutation p.R1798H 0.19 deleterious(0) probably_damaging(0.991) TCGA-ZF-A9RN-01 8 145726134 145726134 G A PPP1R16A Silent p.E299E 0.32 TCGA-ZF-A9RN-01 8 145999978 145999978 C T ZNF34 Missense_Mutation p.R119K 0.21 tolerated(0.51) benign(0.058) TCGA-ZF-A9RN-01 8 23156440 23156440 G A LOXL2 Silent p.F718F 0.43 TCGA-ZF-A9RN-01 8 35608220 35608220 T A UNC5D Missense_Mutation p.C686S 0.40 tolerated(0.57) benign(0.05) TCGA-ZF-A9RN-01 8 52325719 52325719 A G PXDNL Missense_Mutation p.L632S 0.17 deleterious(0) probably_damaging(0.973) TCGA-ZF-A9RN-01 8 55540611 55540611 A T RP1 Missense_Mutation p.H1390L 0.18 tolerated(0.57) benign(0.002) TCGA-ZF-A9RN-01 8 82751898 82751898 A G SNX16 Silent p.S108S 0.19 TCGA-ZF-A9RN-01 8 95793322 95793322 G C DPY19L4 Missense_Mutation p.R548T 0.22 tolerated(0.09) probably_damaging(0.984) TCGA-ZF-A9RN-01 8 95837288 95837288 G C INTS8 Missense_Mutation p.E100Q 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-A9RN-01 9 117360098 117360098 T G ATP6V1G1 3'UTR 0.38 TCGA-ZF-A9RN-01 9 135865219 135865219 C T GFI1B Missense_Mutation p.P247S 0.35 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 9 14801753 14801753 G A FREM1 Silent p.I1197I 0.27 TCGA-ZF-A9RN-01 9 18721562 18721562 G C ADAMTSL1 Missense_Mutation p.L635F 0.05 deleterious(0) probably_damaging(0.986) TCGA-ZF-A9RN-01 9 19786407 19786407 C A SLC24A2 Missense_Mutation p.C153F 0.39 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 9 5465595 5465595 G A CD274 Missense_Mutation p.R260H 0.21 tolerated(0.41) benign(0.001) TCGA-ZF-A9RN-01 9 79325695 79325695 C T PRUNE2 Missense_Mutation p.A499T 0.22 tolerated(0.07) benign(0.139) TCGA-ZF-A9RN-01 9 79933322 79933322 G C VPS13A Missense_Mutation p.A1710P 0.32 tolerated(0.3) benign(0.002) TCGA-ZF-A9RN-01 9 93607847 93607847 G C SYK Silent p.L183L 0.49 TCGA-ZF-A9RN-01 9 96436024 96436024 G T PHF2 Missense_Mutation p.G836C 0.53 deleterious(0) unknown(0) TCGA-ZF-A9RN-01 X 107978337 107978337 C G IRS4 Missense_Mutation p.R413T 0.45 deleterious(0) possibly_damaging(0.795) TCGA-ZF-A9RN-01 X 107978819 107978819 G C IRS4 Silent p.G252G 0.30 TCGA-ZF-A9RN-01 X 117758546 117758546 A G DOCK11 Silent p.G1172G 0.29 TCGA-ZF-A9RN-01 X 120182836 120182836 G C GLUD2 Missense_Mutation p.G433A 0.36 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 X 12904485 12904485 T C TLR7 Silent p.F286F 0.35 TCGA-ZF-A9RN-01 X 129801557 129801557 A G ENOX2 Missense_Mutation p.M314T 0.39 deleterious(0) benign(0.076) TCGA-ZF-A9RN-01 X 134482917 134482917 T A ZNF449 Intron 0.29 TCGA-ZF-A9RN-01 X 135453571 135453571 T G GPR112 Missense_Mutation p.V2494G 0.36 deleterious(0.01) benign(0.441) TCGA-ZF-A9RN-01 X 1409376 1409376 A T CSF2RA Missense_Mutation p.D207V 0.37 deleterious(0) probably_damaging(1) TCGA-ZF-A9RN-01 X 149807418 149807418 A G MTM1 Silent p.P149P 0.49 TCGA-ZF-A9RN-01 X 153225380 153225380 C A HCFC1 Silent p.P439P 0.26 TCGA-ZF-A9RN-01 X 21674383 21674383 C T KLHL34 Silent p.K508K 0.38 TCGA-ZF-A9RN-01 X 47030517 47030517 C A RBM10 Silent p.R98R 0.37 TCGA-ZF-A9RN-01 X 47442865 47442865 G C TIMP1 Silent p.L17L 0.38 TCGA-ZF-A9RN-01 X 77373556 77373556 T A PGK1 Missense_Mutation p.V177E 0.27 tolerated(0.07) possibly_damaging(0.874) TCGA-ZF-A9RN-01 X 77373557 77373557 A G PGK1 Silent p.V177V 0.29 TCGA-ZF-AA4N-01 10 102748438 102748438 C T C10orf2 Silent p.I157I 0.30 TCGA-ZF-AA4N-01 10 102896499 102896499 C A TLX1 Silent p.I274I 0.33 TCGA-ZF-AA4N-01 10 103826346 103826346 G A HPS6 Missense_Mutation p.R372Q 0.46 tolerated(0.12) benign(0.007) TCGA-ZF-AA4N-01 10 103826396 103826396 G A HPS6 Missense_Mutation p.E389K 0.45 tolerated(0.52) benign(0.007) TCGA-ZF-AA4N-01 10 103827338 103827338 G A HPS6 Missense_Mutation p.E703K 0.31 deleterious(0.01) possibly_damaging(0.863) TCGA-ZF-AA4N-01 10 103827611 103827611 G C HPS6 3'UTR 0.30 TCGA-ZF-AA4N-01 10 105037202 105037202 C T INA Silent p.S78S 0.30 TCGA-ZF-AA4N-01 10 51818909 51818909 C T RP11-324H6.5 RNA 0.47 TCGA-ZF-AA4N-01 10 84745042 84745042 G A NRG3 Missense_Mutation p.G591E 0.38 tolerated(0.25) possibly_damaging(0.702) TCGA-ZF-AA4N-01 10 85962872 85962872 C G CDHR1 Missense_Mutation p.T259S 0.09 tolerated(0.4) benign(0.012) TCGA-ZF-AA4N-01 11 1097850 1097850 G A MUC2 Missense_Mutation p.G2315R 0.19 unknown(0) TCGA-ZF-AA4N-01 11 117079768 117079768 G A PCSK7 Silent p.V512V 0.19 TCGA-ZF-AA4N-01 11 118425976 118425976 G A IFT46 Nonsense_Mutation p.Q134* 0.07 TCGA-ZF-AA4N-01 11 118531384 118531384 G C TREH Missense_Mutation p.F322L 0.57 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4N-01 11 1217699 1217699 C T MUC5AC Intron 0.51 TCGA-ZF-AA4N-01 11 16838501 16838501 G A PLEKHA7 Missense_Mutation p.S571L 0.56 deleterious(0.02) benign(0.015) TCGA-ZF-AA4N-01 11 1718780 1718780 C T KRTAP5-6 Missense_Mutation p.S102L 0.49 tolerated_low_confidence(0.24) unknown(0) TCGA-ZF-AA4N-01 11 18497978 18497978 C A LDHAL6A Missense_Mutation p.L214M 0.47 deleterious(0.02) probably_damaging(0.988) TCGA-ZF-AA4N-01 11 46880573 46880573 C G LRP4 Missense_Mutation p.W1893C 0.60 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZF-AA4N-01 11 47264601 47264601 G C ACP2 Missense_Mutation p.C310W 0.18 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4N-01 11 57382031 57382031 C T SERPING1 Nonsense_Mutation p.R494* 0.52 TCGA-ZF-AA4N-01 11 58206945 58206945 C T OR5B12 Missense_Mutation p.R227H 0.58 tolerated_low_confidence(1) benign(0.007) TCGA-ZF-AA4N-01 11 60694876 60694876 T C TMEM132A Missense_Mutation p.F101L 0.17 deleterious(0) benign(0.202) TCGA-ZF-AA4N-01 11 61615710 61615710 T C FADS2 Missense_Mutation p.V233A 0.47 deleterious(0) possibly_damaging(0.61) TCGA-ZF-AA4N-01 11 63662744 63662744 C G MARK2 Silent p.L56L 0.55 TCGA-ZF-AA4N-01 11 65385688 65385688 G A PCNXL3 Silent p.R285R 0.09 TCGA-ZF-AA4N-01 12 110495088 110495088 C A C12orf76 Nonsense_Mutation p.E69* 0.28 TCGA-ZF-AA4N-01 12 113624824 113624824 C G RITA1 Silent p.T91T 0.47 TCGA-ZF-AA4N-01 12 123641350 123641350 A T MPHOSPH9 3'UTR 0.42 TCGA-ZF-AA4N-01 12 49421666 49421666 C G KMT2D Missense_Mutation p.D4855H 0.44 unknown(0) TCGA-ZF-AA4N-01 12 49421925 49421925 C T KMT2D Splice_Site p.X4795_splice 0.30 TCGA-ZF-AA4N-01 12 49423015 49423015 C A KMT2D Nonsense_Mutation p.E4694* 0.41 TCGA-ZF-AA4N-01 12 53682466 53682466 C G ESPL1 Nonsense_Mutation p.S1564* 0.16 TCGA-ZF-AA4N-01 12 54743440 54743440 C G COPZ1 Missense_Mutation p.Q162E 0.28 deleterious(0.01) benign(0.271) TCGA-ZF-AA4N-01 12 69080729 69080729 C T NUP107 5'UTR 0.24 TCGA-ZF-AA4N-01 13 27246115 27246115 A C WASF3 Silent p.R177R 0.12 TCGA-ZF-AA4N-01 13 27260039 27260039 C G WASF3 3'UTR 0.50 TCGA-ZF-AA4N-01 14 20871927 20871927 C T TEP1 Silent p.R383R 0.52 TCGA-ZF-AA4N-01 14 30047542 30047542 A G PRKD1 Missense_Mutation p.L820P 0.30 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4N-01 14 30066936 30066936 C T PRKD1 Missense_Mutation p.R732Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4N-01 14 31071317 31071317 C T G2E3 Silent p.S330S 0.09 TCGA-ZF-AA4N-01 14 60976257 60976257 C T SIX6 Silent p.L47L 0.51 TCGA-ZF-AA4N-01 14 91662818 91662818 G A C14orf159 Missense_Mutation p.R432K 0.18 tolerated(0.06) possibly_damaging(0.596) TCGA-ZF-AA4N-01 14 94528953 94528953 G C DDX24 Missense_Mutation p.L245V 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4N-01 15 22332594 22332594 T A RP11-69H14.6 RNA 0.17 TCGA-ZF-AA4N-01 15 33955919 33955919 G A RYR3 Missense_Mutation p.R1867H 0.58 probably_damaging(0.983) TCGA-ZF-AA4N-01 15 35166897 35166897 G C AQR Missense_Mutation p.Q1136E 0.43 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4N-01 15 41221880 41221880 C T DLL4 Missense_Mutation p.S5F 0.25 tolerated_low_confidence(0.64) benign(0.047) TCGA-ZF-AA4N-01 15 42171994 42171994 C G SPTBN5 Silent p.L960L 0.24 TCGA-ZF-AA4N-01 15 42556389 42556389 C G TMEM87A Missense_Mutation p.E102Q 0.32 tolerated(0.22) benign(0.077) TCGA-ZF-AA4N-01 15 74336846 74336846 G A PML Missense_Mutation p.E716K 0.29 deleterious(0.03) benign(0.055) TCGA-ZF-AA4N-01 15 90030205 90030205 C T RHCG Missense_Mutation p.V66M 0.11 deleterious(0) probably_damaging(0.988) TCGA-ZF-AA4N-01 15 90320328 90320328 C A MESP2 Missense_Mutation p.A247E 0.33 tolerated(0.17) benign(0.002) TCGA-ZF-AA4N-01 16 1827778 1827778 G T SPSB3 Missense_Mutation p.L231I 0.27 deleterious(0) probably_damaging(1) TCGA-ZF-AA4N-01 16 2015198 2015198 C T RNF151 5'Flank 0.19 TCGA-ZF-AA4N-01 16 21858852 21858852 G C NPIPB4 Missense_Mutation p.T44S 0.14 possibly_damaging(0.453) TCGA-ZF-AA4N-01 16 22143020 22143020 C A VWA3A Silent p.L614L 0.28 TCGA-ZF-AA4N-01 16 22335849 22335849 T A POLR3E Missense_Mutation p.F385Y 0.33 deleterious(0.02) benign(0.279) TCGA-ZF-AA4N-01 16 28848150 28848150 C G ATXN2L 3'UTR 0.17 TCGA-ZF-AA4N-01 16 3824690 3824690 C T CREBBP Missense_Mutation p.M721I 0.27 benign(0.038) TCGA-ZF-AA4N-01 16 50733835 50733835 C T NOD2 Silent p.I170I 0.37 TCGA-ZF-AA4N-01 16 67686168 67686168 G A RLTPR Missense_Mutation p.E915K 0.31 tolerated(0.13) benign(0.099) TCGA-ZF-AA4N-01 16 67686219 67686219 G A RLTPR Missense_Mutation p.E932K 0.37 tolerated(0.39) benign(0.067) TCGA-ZF-AA4N-01 16 67686228 67686228 G C RLTPR Missense_Mutation p.E935Q 0.38 tolerated(0.33) benign(0.054) TCGA-ZF-AA4N-01 16 84879412 84879412 G A CRISPLD2 Silent p.E87E 0.31 TCGA-ZF-AA4N-01 17 10295278 10295278 T C MYH8 Missense_Mutation p.K1862R 0.08 deleterious(0.01) probably_damaging(0.958) TCGA-ZF-AA4N-01 17 2607715 2607715 G C CLUH Missense_Mutation p.Q44E 0.33 tolerated(0.18) benign(0.003) TCGA-ZF-AA4N-01 17 42092225 42092225 G A TMEM101 Silent p.F32F 0.40 TCGA-ZF-AA4N-01 17 42462348 42462348 G T ITGA2B Missense_Mutation p.S256Y 0.14 tolerated(1) benign(0.003) TCGA-ZF-AA4N-01 17 42636592 42636592 G A FZD2 Silent p.P512P 0.21 TCGA-ZF-AA4N-01 17 4496425 4496425 G A SMTNL2 Missense_Mutation p.S230N 0.55 tolerated(0.11) possibly_damaging(0.448) TCGA-ZF-AA4N-01 17 4645341 4645341 G A ZMYND15 Missense_Mutation p.S320N 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-ZF-AA4N-01 17 47696435 47696435 C G SPOP Missense_Mutation p.D130H 0.24 tolerated(0.13) probably_damaging(1) TCGA-ZF-AA4N-01 17 56290372 56290372 C T MKS1 Missense_Mutation p.E277K 0.42 tolerated(0.57) benign(0.009) TCGA-ZF-AA4N-01 17 73132001 73132001 C T HN1 3'UTR 0.33 TCGA-ZF-AA4N-01 17 73500695 73500695 G C CASKIN2 Silent p.G424G 0.14 TCGA-ZF-AA4N-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.26 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4N-01 18 12963256 12963256 A G SEH1L Missense_Mutation p.D136G 0.06 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4N-01 18 61471558 61471558 C G SERPINB7 Missense_Mutation p.Q278E 0.38 deleterious(0.01) benign(0.243) TCGA-ZF-AA4N-01 18 9553350 9553350 C T PPP4R1 Missense_Mutation p.R754K 0.44 deleterious(0) benign(0.067) TCGA-ZF-AA4N-01 18 9553421 9553421 C G PPP4R1 Splice_Site p.X731_splice 0.38 TCGA-ZF-AA4N-01 19 10244933 10244933 G C DNMT1 Missense_Mutation p.I1608M 0.23 deleterious(0.01) probably_damaging(0.966) TCGA-ZF-AA4N-01 19 10602447 10602447 C T KEAP1 Silent p.V377V 0.30 TCGA-ZF-AA4N-01 19 10602872 10602872 C T KEAP1 Missense_Mutation p.D236N 0.40 tolerated(0.06) benign(0.072) TCGA-ZF-AA4N-01 19 16192768 16192771 GAGG T TPM4 Nonsense_Mutation p.E96_E97delins* 0.43 TCGA-ZF-AA4N-01 19 16872917 16872917 C G NWD1 Missense_Mutation p.L701V 0.29 tolerated(0.52) benign(0.192) TCGA-ZF-AA4N-01 19 1800145 1800145 G T ATP8B3 Missense_Mutation p.F451L 0.40 tolerated(0.17) benign(0.107) TCGA-ZF-AA4N-01 19 1817250 1817250 G A REXO1 Missense_Mutation p.H1057Y 0.44 tolerated(0.56) benign(0.106) TCGA-ZF-AA4N-01 19 18499553 18499553 G C GDF15 Silent p.P245P 0.20 TCGA-ZF-AA4N-01 19 22846919 22846919 T A ZNF492 Missense_Mutation p.F150I 0.39 deleterious(0.03) probably_damaging(0.961) TCGA-ZF-AA4N-01 19 37879873 37879873 G T ZNF527 Nonsense_Mutation p.G308* 0.25 TCGA-ZF-AA4N-01 19 42352827 42352827 G A DMRTC2 Intron 0.36 TCGA-ZF-AA4N-01 19 44384189 44384189 C G ZNF404 Missense_Mutation p.E37Q 0.43 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA4N-01 19 44980777 44980777 T - ZNF180 Frame_Shift_Del p.T641Hfs*4 0.13 TCGA-ZF-AA4N-01 19 45375180 45375180 C A PVRL2 Nonsense_Mutation p.C183* 0.07 TCGA-ZF-AA4N-01 19 45885853 45885853 C G PPP1R13L Missense_Mutation p.E794Q 0.41 deleterious(0.01) benign(0.277) TCGA-ZF-AA4N-01 19 46191818 46191818 G T SNRPD2 Silent p.L3L 0.39 TCGA-ZF-AA4N-01 19 46192587 46192587 G C SNRPD2 Intron 0.53 TCGA-ZF-AA4N-01 19 55112328 55112328 G C LILRA1 3'UTR 0.17 TCGA-ZF-AA4N-01 19 56466330 56466330 G A NLRP8 Silent p.L302L 0.29 TCGA-ZF-AA4N-01 19 56972125 56972125 C G ZNF667 Silent p.L31L 0.41 TCGA-ZF-AA4N-01 1 101190416 101190416 A T VCAM1 Missense_Mutation p.N300Y 0.48 deleterious(0) benign(0.27) TCGA-ZF-AA4N-01 1 11883766 11883766 G A CLCN6 Silent p.P152P 0.25 TCGA-ZF-AA4N-01 1 155014045 155014045 C T DCST1 Missense_Mutation p.S235L 0.26 deleterious(0.01) possibly_damaging(0.791) TCGA-ZF-AA4N-01 1 156925550 156925550 C A ARHGEF11 Missense_Mutation p.K571N 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-ZF-AA4N-01 1 160249629 160249629 C T PEX19 Missense_Mutation p.D260N 0.39 deleterious(0.01) possibly_damaging(0.489) TCGA-ZF-AA4N-01 1 161197699 161197699 G A TOMM40L Nonsense_Mutation p.W135* 0.46 TCGA-ZF-AA4N-01 1 162039909 162039909 C A NOS1AP 5'UTR 0.16 TCGA-ZF-AA4N-01 1 175096139 175096139 G T TNN Missense_Mutation p.G988V 0.40 deleterious(0.05) benign(0.064) TCGA-ZF-AA4N-01 1 177906436 177906436 G C SEC16B Missense_Mutation p.L806V 0.32 tolerated(0.43) benign(0.024) TCGA-ZF-AA4N-01 1 206566199 206566199 C T SRGAP2 Missense_Mutation p.R128C 0.12 deleterious(0) probably_damaging(0.919) TCGA-ZF-AA4N-01 1 209789835 209789835 C G LAMB3 Missense_Mutation p.E1121D 0.29 tolerated(0.49) benign(0.004) TCGA-ZF-AA4N-01 1 22307332 22307332 G A CELA3B Missense_Mutation p.E49K 0.20 tolerated(0.77) benign(0.008) TCGA-ZF-AA4N-01 1 226421213 226421213 G A LIN9 Silent p.D435D 0.35 TCGA-ZF-AA4N-01 1 227921252 227921252 C T JMJD4 Missense_Mutation p.D275N 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-ZF-AA4N-01 1 24392413 24392413 C G MYOM3 Missense_Mutation p.E1168Q 0.49 tolerated(1) benign(0.004) TCGA-ZF-AA4N-01 1 244855254 244855254 G T DESI2 Nonsense_Mutation p.E95* 0.08 TCGA-ZF-AA4N-01 1 26153142 26153142 C T MTFR1L Silent p.P92P 0.26 TCGA-ZF-AA4N-01 1 36605707 36605707 C T TRAPPC3 Missense_Mutation p.E35K 0.24 deleterious(0.01) possibly_damaging(0.489) TCGA-ZF-AA4N-01 1 84955382 84955382 C G RPF1 Missense_Mutation p.L145V 0.16 deleterious(0) probably_damaging(0.947) TCGA-ZF-AA4N-01 1 85331503 85331503 G A LPAR3 Missense_Mutation p.R101C 0.10 deleterious(0.05) probably_damaging(0.964) TCGA-ZF-AA4N-01 1 92772769 92772769 C T RPAP2 Nonsense_Mutation p.Q142* 0.34 TCGA-ZF-AA4N-01 20 33173345 33173345 G C PIGU Missense_Mutation p.F274L 0.39 deleterious(0.01) possibly_damaging(0.785) TCGA-ZF-AA4N-01 21 36259264 36259264 C T RUNX1 Missense_Mutation p.R76H 0.14 deleterious(0.01) benign(0.09) TCGA-ZF-AA4N-01 21 40250479 40250479 G C AF064858.6 RNA 0.15 TCGA-ZF-AA4N-01 21 43522256 43522256 T C C21orf128 3'UTR 0.62 TCGA-ZF-AA4N-01 21 45876836 45876836 C G LRRC3 Missense_Mutation p.I103M 0.10 tolerated(0.09) possibly_damaging(0.61) TCGA-ZF-AA4N-01 22 23406223 23406223 G A RTDR1 Silent p.F170F 0.22 TCGA-ZF-AA4N-01 22 32017794 32017794 G C PISD Missense_Mutation p.H99Q 0.42 tolerated(0.23) benign(0.007) TCGA-ZF-AA4N-01 22 36684882 36684882 G A MYH9 Missense_Mutation p.A1554V 0.06 probably_damaging(0.998) TCGA-ZF-AA4N-01 22 44692665 44692665 G A KIAA1644 Silent p.F56F 0.42 TCGA-ZF-AA4N-01 2 101521216 101521220 AATGG - NPAS2 Missense_Mutation p.M1_?2 0.35 TCGA-ZF-AA4N-01 2 145187411 145187412 - T ZEB2 Frame_Shift_Ins p.D86Rfs*2 0.33 TCGA-ZF-AA4N-01 2 166900333 166900333 C T SCN1A Missense_Mutation p.R630Q 0.34 tolerated(0.29) possibly_damaging(0.87) TCGA-ZF-AA4N-01 2 169707825 169707825 G C NOSTRIN Missense_Mutation p.D313H 0.49 deleterious(0.01) probably_damaging(0.98) TCGA-ZF-AA4N-01 2 219339413 219339413 C T USP37 Missense_Mutation p.E747K 0.24 deleterious(0.02) benign(0.403) TCGA-ZF-AA4N-01 3 121260199 121260199 G C POLQ Silent p.L157L 0.30 TCGA-ZF-AA4N-01 3 130380682 130380682 C T COL6A6 Missense_Mutation p.A2011V 0.43 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4N-01 3 156877690 156877690 G C CCNL1 Missense_Mutation p.S65W 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-ZF-AA4N-01 3 168864296 168864296 T C MECOM 5'Flank 0.29 TCGA-ZF-AA4N-01 3 170720436 170720436 C T SLC2A2 Missense_Mutation p.A333T 0.39 deleterious(0.01) possibly_damaging(0.859) TCGA-ZF-AA4N-01 3 171405266 171405266 C A PLD1 Nonsense_Mutation p.G550* 0.36 TCGA-ZF-AA4N-01 3 172028627 172028627 G A FNDC3B Missense_Mutation p.D404N 0.29 deleterious(0) probably_damaging(0.97) TCGA-ZF-AA4N-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.32 tolerated(0.05) possibly_damaging(0.704) TCGA-ZF-AA4N-01 3 185304057 185304057 G T SENP2 5'UTR 0.26 TCGA-ZF-AA4N-01 3 193068958 193068958 G A ATP13A5 Silent p.F213F 0.36 TCGA-ZF-AA4N-01 3 195794522 195794522 G T TFRC Missense_Mutation p.L303M 0.38 tolerated(0.09) probably_damaging(0.967) TCGA-ZF-AA4N-01 3 196674848 196674848 G A PIGZ Missense_Mutation p.A307V 0.39 deleterious(0.05) probably_damaging(0.951) TCGA-ZF-AA4N-01 3 25640995 25640995 C T TOP2B Silent p.R1542R 0.19 TCGA-ZF-AA4N-01 3 30713405 30713405 A T TGFBR2 Missense_Mutation p.I269F 0.41 deleterious(0) probably_damaging(0.97) TCGA-ZF-AA4N-01 3 3888132 3888132 C T LRRN1 Nonsense_Mutation p.Q603* 0.37 TCGA-ZF-AA4N-01 3 50255397 50255397 G A SLC38A3 RNA 0.32 TCGA-ZF-AA4N-01 3 57902775 57902775 G A SLMAP Missense_Mutation p.E727K 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.805) TCGA-ZF-AA4N-01 3 74350893 74350893 G T CNTN3 Missense_Mutation p.S617Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4N-01 3 78706263 78706263 G A ROBO1 Nonsense_Mutation p.Q867* 0.35 TCGA-ZF-AA4N-01 4 183664436 183664436 G C TENM3 Missense_Mutation p.G1165R 0.21 deleterious(0.01) benign(0.095) TCGA-ZF-AA4N-01 4 71200967 71200967 A T CABS1 Nonsense_Mutation p.K71* 0.59 TCGA-ZF-AA4N-01 4 73012898 73012898 C A NPFFR2 Missense_Mutation p.P313Q 0.63 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-AA4N-01 4 73012900 73012900 A T NPFFR2 Missense_Mutation p.N314Y 0.64 deleterious(0.04) possibly_damaging(0.845) TCGA-ZF-AA4N-01 4 88583648 88583648 A G DMP1 Missense_Mutation p.K240E 0.70 tolerated(0.12) benign(0.031) TCGA-ZF-AA4N-01 5 140201490 140201490 G A PCDHA5 Missense_Mutation p.V44I 0.06 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-ZF-AA4N-01 5 154181879 154181879 A C LARP1 Missense_Mutation p.K600Q 0.12 tolerated(0.23) probably_damaging(0.999) TCGA-ZF-AA4N-01 5 158126150 158126150 G A EBF1 Missense_Mutation p.A582V 0.30 deleterious_low_confidence(0.03) benign(0.071) TCGA-ZF-AA4N-01 5 82817722 82817722 C T VCAN Silent p.I1199I 0.55 TCGA-ZF-AA4N-01 6 143825328 143825328 C T FUCA2 Silent p.K158K 0.27 TCGA-ZF-AA4N-01 6 147706056 147706056 G T STXBP5 3'Flank 0.33 TCGA-ZF-AA4N-01 6 150001083 150001083 G A LATS1 Missense_Mutation p.H841Y 0.40 deleterious(0) probably_damaging(1) TCGA-ZF-AA4N-01 6 152774651 152774651 T C SYNE1 Intron 0.42 TCGA-ZF-AA4N-01 6 24205370 24205370 G T DCDC2 Intron 0.12 TCGA-ZF-AA4N-01 6 27368612 27368612 C T ZNF391 Missense_Mutation p.H155Y 0.09 deleterious(0) probably_damaging(0.964) TCGA-ZF-AA4N-01 6 35211499 35211499 C G SCUBE3 Missense_Mutation p.P680A 0.29 tolerated(0.58) benign(0.021) TCGA-ZF-AA4N-01 6 46129186 46129186 G A ENPP5 Silent p.V437V 0.39 TCGA-ZF-AA4N-01 6 74073671 74073671 T G KHDC3L 3'UTR 0.33 TCGA-ZF-AA4N-01 6 88855052 88855052 C A CNR1 5'UTR 0.12 TCGA-ZF-AA4N-01 6 89388103 89388103 C G RNGTT Missense_Mutation p.G492A 0.46 deleterious(0) probably_damaging(0.926) TCGA-ZF-AA4N-01 6 89975445 89975445 C T GABRR2 Missense_Mutation p.R259H 0.21 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA4N-01 6 90406179 90406179 G A MDN1 Missense_Mutation p.H3095Y 0.43 benign(0.04) TCGA-ZF-AA4N-01 7 105111132 105111132 C G PUS7 Intron 0.29 TCGA-ZF-AA4N-01 7 105112576 105112576 C T PUS7 Intron 0.33 TCGA-ZF-AA4N-01 7 105112641 105112641 C T PUS7 Splice_Site p.X392_splice 0.30 TCGA-ZF-AA4N-01 7 113522169 113522169 C T PPP1R3A Silent p.L297L 0.06 TCGA-ZF-AA4N-01 7 113558512 113558512 T C PPP1R3A Silent p.S180S 0.14 TCGA-ZF-AA4N-01 7 115581890 115581890 G A TFEC Intron 0.41 TCGA-ZF-AA4N-01 7 139299093 139299093 C G HIPK2 Missense_Mutation p.Q643H 0.27 deleterious(0.05) benign(0.015) TCGA-ZF-AA4N-01 7 14217686 14217686 C T DGKB Missense_Mutation p.R739Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4N-01 7 142326760 142326760 G A TRBV19 Missense_Mutation p.D20N 0.17 tolerated(0.36) possibly_damaging(0.714) TCGA-ZF-AA4N-01 7 33397598 33397598 C T BBS9 Missense_Mutation p.L562F 0.57 deleterious(0) probably_damaging(0.988) TCGA-ZF-AA4N-01 7 57529009 57529009 C G ZNF716 Nonsense_Mutation p.S281* 0.44 TCGA-ZF-AA4N-01 7 74120733 74120733 C G GTF2I Missense_Mutation p.I218M 0.32 deleterious(0) benign(0.143) TCGA-ZF-AA4N-01 8 100654439 100654439 A G VPS13B Missense_Mutation p.D1899G 0.04 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-ZF-AA4N-01 8 101961078 101961078 C T YWHAZ Missense_Mutation p.E14K 0.32 deleterious_low_confidence(0.04) benign(0.137) TCGA-ZF-AA4N-01 8 113518990 113518990 G C CSMD3 Missense_Mutation p.P1609A 0.38 deleterious(0) probably_damaging(1) TCGA-ZF-AA4N-01 8 121381667 121381667 C T COL14A1 Missense_Mutation p.P1752S 0.40 tolerated(0.1) benign(0.437) TCGA-ZF-AA4N-01 8 132957121 132957121 T C EFR3A Splice_Site p.X72_splice 0.14 TCGA-ZF-AA4N-01 8 143694471 143694471 C T ARC Missense_Mutation p.V388M 0.50 deleterious_low_confidence(0.02) benign(0.444) TCGA-ZF-AA4N-01 8 144992609 144992609 C T PLEC Missense_Mutation p.E3931K 0.50 possibly_damaging(0.827) TCGA-ZF-AA4N-01 8 144999878 144999878 C T PLEC Missense_Mutation p.A1544T 0.40 unknown(0) TCGA-ZF-AA4N-01 8 145739638 145739638 C T RECQL4 Missense_Mutation p.D605N 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-AA4N-01 8 26217721 26217721 A T PPP2R2A Missense_Mutation p.D138V 0.24 deleterious(0.01) benign(0.352) TCGA-ZF-AA4N-01 8 48746857 48746857 C T PRKDC Silent p.R2683R 0.31 TCGA-ZF-AA4N-01 8 56986267 56986267 C G RPS20 Missense_Mutation p.R55P 0.34 tolerated(0.13) benign(0.23) TCGA-ZF-AA4N-01 8 82606749 82606749 C T SLC10A5 Silent p.L153L 0.26 TCGA-ZF-AA4N-01 8 86126957 86126957 C T C8orf59 Intron 0.38 TCGA-ZF-AA4N-01 9 104432465 104432465 C T GRIN3A Silent p.R743R 0.11 TCGA-ZF-AA4N-01 9 109771843 109771843 G A ZNF462 Missense_Mutation p.D2403N 0.49 benign(0.007) TCGA-ZF-AA4N-01 9 119976926 119976926 C A ASTN2 Missense_Mutation p.K242N 0.44 deleterious_low_confidence(0) unknown(0) TCGA-ZF-AA4N-01 9 127789123 127789124 TC - SCAI Frame_Shift_Del p.R183Ifs*8 0.14 TCGA-ZF-AA4N-01 9 16419503 16419503 C T BNC2 Silent p.G928G 0.30 TCGA-ZF-AA4N-01 9 21971208 21971208 C G CDKN2A Splice_Site p.X51_splice 0.71 TCGA-ZF-AA4N-01 9 32631912 32631912 C A TAF1L Missense_Mutation p.E1222D 0.08 tolerated(0.46) benign(0.003) TCGA-ZF-AA4N-01 9 70490109 70490109 G A CBWD5 5'Flank 0.05 TCGA-ZF-AA4N-01 9 894058 894058 C T DMRT1 Missense_Mutation p.P229S 0.68 tolerated(0.68) benign(0.039) TCGA-ZF-AA4N-01 9 95480849 95480849 A G BICD2 Missense_Mutation p.L693P 0.38 deleterious(0) probably_damaging(1) TCGA-ZF-AA4N-01 X 151129827 151129827 C T GABRE Missense_Mutation p.D192N 0.84 tolerated(0.72) benign(0.365) TCGA-ZF-AA4N-01 X 32328204 32328204 G C DMD Missense_Mutation p.L2038V 0.74 possibly_damaging(0.567) TCGA-ZF-AA4N-01 X 44703756 44703756 C A DUSP21 Silent p.S126S 0.05 TCGA-ZF-AA4N-01 X 86773256 86773256 T C KLHL4 Silent p.C120C 0.76 TCGA-ZF-AA4N-01 X 92927154 92927154 C T NAP1L3 Missense_Mutation p.D384N 0.08 deleterious(0.04) probably_damaging(0.945) TCGA-ZF-AA4R-01 10 15326078 15326078 C T FAM171A1 Missense_Mutation p.D42N 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA4R-01 10 94688173 94688173 G A EXOC6 Silent p.S322S 0.23 TCGA-ZF-AA4R-01 11 124252925 124252925 G C OR8B2 Silent p.L105L 0.21 TCGA-ZF-AA4R-01 11 1271261 1271261 C G MUC5B Missense_Mutation p.S4384C 0.32 possibly_damaging(0.489) TCGA-ZF-AA4R-01 11 63672422 63672422 G A MARK2 Missense_Mutation p.G614D 0.04 tolerated(0.2) benign(0.066) TCGA-ZF-AA4R-01 11 6807092 6807092 C G OR2AG1 Missense_Mutation p.S275C 0.39 deleterious(0) probably_damaging(1) TCGA-ZF-AA4R-01 12 13102644 13102644 C T GPRC5D Silent p.L225L 0.26 TCGA-ZF-AA4R-01 12 57114946 57114946 A G NACA Missense_Mutation p.I123T 0.15 deleterious_low_confidence(0) benign(0) TCGA-ZF-AA4R-01 12 59271368 59271368 C G LRIG3 Missense_Mutation p.V784L 0.06 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4R-01 12 81101624 81101624 C A MYF6 Silent p.S42S 0.38 TCGA-ZF-AA4R-01 13 20608406 20608406 C G ZMYM2 Missense_Mutation p.Q661E 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-ZF-AA4R-01 13 37598509 37598512 TTGA - SUPT20H Frame_Shift_Del p.I466Nfs*83 0.41 TCGA-ZF-AA4R-01 13 41768138 41768138 G C KBTBD7 Missense_Mutation p.R86G 0.66 deleterious(0) probably_damaging(1) TCGA-ZF-AA4R-01 14 102446829 102446829 G T DYNC1H1 Silent p.L301L 0.08 TCGA-ZF-AA4R-01 14 102446830 102446830 G T DYNC1H1 Missense_Mutation p.D302Y 0.09 possibly_damaging(0.908) TCGA-ZF-AA4R-01 14 106209357 106209357 T A IGHG1 Missense_Mutation p.T18S 0.31 tolerated(0.05) benign(0.049) TCGA-ZF-AA4R-01 14 21161760 21161760 G A ANG Missense_Mutation p.V13M 0.32 tolerated(1) unknown(0) TCGA-ZF-AA4R-01 14 24709211 24709211 G C TINF2 Intron 0.32 TCGA-ZF-AA4R-01 14 58831239 58831239 C T ARID4A Missense_Mutation p.S811L 0.24 tolerated_low_confidence(0.08) benign(0.275) TCGA-ZF-AA4R-01 14 91770134 91770134 C T CCDC88C Silent p.S1182S 0.17 TCGA-ZF-AA4R-01 15 100215643 100215643 G C MEF2A Missense_Mutation p.G219A 0.36 deleterious(0) benign(0.318) TCGA-ZF-AA4R-01 15 64970407 64970407 C T ZNF609 Silent p.R1165R 0.17 TCGA-ZF-AA4R-01 16 3788653 3788653 A C CREBBP Missense_Mutation p.L1434R 0.29 unknown(0) TCGA-ZF-AA4R-01 16 70359561 70359561 A C DDX19B Missense_Mutation p.K193Q 0.05 tolerated(0.15) benign(0.004) TCGA-ZF-AA4R-01 17 15975538 15975538 C T NCOR1 Silent p.L1272L 0.24 TCGA-ZF-AA4R-01 17 28417687 28417688 TC - EFCAB5 Frame_Shift_Del p.L1312Rfs*3 0.23 TCGA-ZF-AA4R-01 17 37627275 37627275 C T CDK12 Missense_Mutation p.A397V 0.08 possibly_damaging(0.827) TCGA-ZF-AA4R-01 17 37880257 37880257 C G ERBB2 Missense_Mutation p.I767M 0.37 deleterious(0) probably_damaging(1) TCGA-ZF-AA4R-01 17 63532475 63532475 G A AXIN2 Missense_Mutation p.R702C 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4R-01 17 6493171 6493171 C T KIAA0753 Missense_Mutation p.R905H 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-ZF-AA4R-01 17 73658559 73658559 C A RECQL5 Silent p.G257G 0.24 TCGA-ZF-AA4R-01 17 74076414 74076414 C T ZACN Silent p.L151L 0.14 TCGA-ZF-AA4R-01 19 33792453 33792453 C T CEBPA Missense_Mutation p.E290K 0.31 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA4R-01 19 53431927 53431927 A C ZNF321P 3'UTR 0.08 TCGA-ZF-AA4R-01 19 56206575 56206575 C T EPN1 Silent p.L614L 0.27 TCGA-ZF-AA4R-01 1 115226976 115226976 C T AMPD1 Missense_Mutation p.E164K 0.39 deleterious(0.05) possibly_damaging(0.665) TCGA-ZF-AA4R-01 1 149858166 149858166 G C HIST2H2BE Missense_Mutation p.P9A 0.80 tolerated_low_confidence(0.09) unknown(0) TCGA-ZF-AA4R-01 1 16095061 16095061 C G FBLIM1 Silent p.L159L 0.10 TCGA-ZF-AA4R-01 1 204956556 204956556 C T NFASC Silent p.A827A 0.26 TCGA-ZF-AA4R-01 1 22828017 22828017 A G ZBTB40 Silent p.G288G 0.35 TCGA-ZF-AA4R-01 1 228560599 228560599 G T OBSCN Missense_Mutation p.V8331L 0.36 benign(0.008) TCGA-ZF-AA4R-01 1 248551442 248551442 T A OR2T6 Missense_Mutation p.F178Y 0.10 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4R-01 1 33291869 33291869 G C S100PBP Missense_Mutation p.E57Q 0.15 tolerated(0.05) benign(0.273) TCGA-ZF-AA4R-01 1 33944984 33944984 C G ZSCAN20 Nonsense_Mutation p.S32* 0.25 TCGA-ZF-AA4R-01 1 84701105 84701105 G A PRKACB 3'UTR 0.27 TCGA-ZF-AA4R-01 21 47954001 47954001 C A DIP2A Missense_Mutation p.T505K 0.15 tolerated(0.06) benign(0.345) TCGA-ZF-AA4R-01 2 179422059 179422059 G A TTN Silent p.F29310F 0.17 TCGA-ZF-AA4R-01 2 179454225 179454225 C T TTN Missense_Mutation p.V20743M 0.67 TCGA-ZF-AA4R-01 2 179466775 179466775 G T TTN Missense_Mutation p.P18408Q 0.11 TCGA-ZF-AA4R-01 2 19552087 19552087 C G OSR1 Missense_Mutation p.K250N 0.41 deleterious(0) probably_damaging(0.924) TCGA-ZF-AA4R-01 2 198265452 198265452 T C SF3B1 Missense_Mutation p.E902G 0.51 deleterious(0.01) probably_damaging(0.926) TCGA-ZF-AA4R-01 2 232577170 232577171 - AT PTMA Frame_Shift_Ins p.E79Mfs*42 0.28 TCGA-ZF-AA4R-01 2 75115175 75115175 C T HK2 Nonsense_Mutation p.Q789* 0.18 TCGA-ZF-AA4R-01 2 85808784 85808784 T C VAMP8 Missense_Mutation p.I83T 0.42 tolerated(0.07) benign(0.057) TCGA-ZF-AA4R-01 3 122399901 122399901 C G PARP14 Missense_Mutation p.F57L 0.52 tolerated(1) benign(0) TCGA-ZF-AA4R-01 3 160148907 160148907 G C SMC4 Missense_Mutation p.D1010H 0.53 deleterious(0.04) possibly_damaging(0.726) TCGA-ZF-AA4R-01 3 169514140 169514140 T G LRRC34 Missense_Mutation p.D309A 0.43 deleterious(0) probably_damaging(0.987) TCGA-ZF-AA4R-01 3 185636168 185636168 G C TRA2B Missense_Mutation p.R281G 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-ZF-AA4R-01 3 185636210 185636210 G C TRA2B Missense_Mutation p.P267A 0.27 deleterious_low_confidence(0) unknown(0) TCGA-ZF-AA4R-01 3 196533474 196533474 C G PAK2 Missense_Mutation p.P165A 0.27 deleterious(0.04) benign(0) TCGA-ZF-AA4R-01 3 44803049 44803049 C A KIAA1143 Missense_Mutation p.A16S 0.11 tolerated(0.49) benign(0.313) TCGA-ZF-AA4R-01 3 44803050 44803050 C A KIAA1143 Silent p.P15P 0.08 TCGA-ZF-AA4R-01 4 71508020 71508020 C T ENAM Missense_Mutation p.P293S 0.43 tolerated(0.12) benign(0.233) TCGA-ZF-AA4R-01 5 23526872 23526872 C T PRDM9 Missense_Mutation p.R559W 0.21 deleterious(0) probably_damaging(1) TCGA-ZF-AA4R-01 5 434243 434243 G A AHRR Missense_Mutation p.R485Q 0.06 tolerated(0.15) possibly_damaging(0.493) TCGA-ZF-AA4R-01 5 54326341 54326341 G T GZMK Nonsense_Mutation p.E98* 0.68 TCGA-ZF-AA4R-01 6 158449785 158449785 C T SYNJ2 Intron 0.35 TCGA-ZF-AA4R-01 7 112423860 112423860 C G TMEM168 Missense_Mutation p.D341H 0.39 deleterious(0.02) probably_damaging(0.947) TCGA-ZF-AA4R-01 7 135276234 135276234 C G NUP205 Missense_Mutation p.L504V 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4R-01 7 37946894 37946894 C T SFRP4 3'UTR 0.33 TCGA-ZF-AA4R-01 7 73012016 73012016 C - MLXIPL Frame_Shift_Del p.D367Tfs*6 0.29 TCGA-ZF-AA4R-01 7 88963952 88963952 T C ZNF804B Silent p.Y552Y 0.05 TCGA-ZF-AA4R-01 7 89793976 89793976 G C STEAP1 Missense_Mutation p.K316N 0.08 deleterious(0.01) benign(0.403) TCGA-ZF-AA4R-01 8 125047530 125047530 C T FER1L6 Nonsense_Mutation p.R767* 0.27 TCGA-ZF-AA4R-01 8 135596075 135596077 CAT - ZFAT In_Frame_Del p.D962del 0.33 TCGA-ZF-AA4R-01 8 71068906 71068906 G A NCOA2 Missense_Mutation p.S565F 0.08 deleterious(0) possibly_damaging(0.871) TCGA-ZF-AA4R-01 8 75926239 75926239 T A CRISPLD1 Missense_Mutation p.S176R 0.24 deleterious(0.04) possibly_damaging(0.461) TCGA-ZF-AA4R-01 9 124914591 124914591 C G NDUFA8 Missense_Mutation p.E50Q 0.26 tolerated(0.12) possibly_damaging(0.459) TCGA-ZF-AA4R-01 9 130988406 130988406 T C DNM1 Intron 0.30 TCGA-ZF-AA4R-01 9 140070222 140070222 C T ANAPC2 Missense_Mutation p.R653H 0.31 deleterious(0) possibly_damaging(0.848) TCGA-ZF-AA4R-01 9 73376573 73376573 T A TRPM3 Missense_Mutation p.T406S 0.19 tolerated(0.78) benign(0.015) TCGA-ZF-AA4R-01 9 95077919 95077919 C T NOL8 Missense_Mutation p.E330K 0.45 deleterious(0.03) possibly_damaging(0.71) TCGA-ZF-AA4R-01 X 140994573 140994573 T G MAGEC1 Missense_Mutation p.S461R 0.10 deleterious_low_confidence(0) benign(0.307) TCGA-ZF-AA4R-01 X 151909197 151909197 G T CSAG1 Missense_Mutation p.G76C 0.62 tolerated_low_confidence(0.09) possibly_damaging(0.656) TCGA-ZF-AA4T-01 10 118352043 118352043 A G PNLIPRP1 Missense_Mutation p.D107G 0.12 deleterious(0) benign(0.079) TCGA-ZF-AA4T-01 10 124922314 124922314 G T BUB3 Missense_Mutation p.R314L 0.20 deleterious(0) probably_damaging(0.972) TCGA-ZF-AA4T-01 10 28030333 28030333 A G MKX Missense_Mutation p.Y97H 0.16 deleterious(0) probably_damaging(0.927) TCGA-ZF-AA4T-01 10 43882861 43882861 G C HNRNPF Missense_Mutation p.Q158E 0.08 tolerated(0.2) probably_damaging(0.944) TCGA-ZF-AA4T-01 10 61830486 61830486 T C ANK3 Missense_Mutation p.N3385D 0.16 probably_damaging(0.956) TCGA-ZF-AA4T-01 11 110479730 110479730 T G ARHGAP20 Missense_Mutation p.E251D 0.17 tolerated(0.42) possibly_damaging(0.831) TCGA-ZF-AA4T-01 11 32858222 32858222 A C PRRG4 Missense_Mutation p.E41A 0.74 tolerated(0.11) benign(0.016) TCGA-ZF-AA4T-01 11 49974406 49974406 A G OR4C13 Silent p.G144G 0.20 TCGA-ZF-AA4T-01 11 56043951 56043951 T G OR5T1 Silent p.T279T 0.08 TCGA-ZF-AA4T-01 11 57982879 57982879 C T OR1S1 Silent p.I221I 0.48 TCGA-ZF-AA4T-01 11 58190423 58190423 G C OR5B2 Silent p.A104A 0.60 TCGA-ZF-AA4T-01 11 64825410 64825410 C A NAALADL1 Silent p.G139G 0.58 TCGA-ZF-AA4T-01 11 64825411 64825411 C A NAALADL1 Missense_Mutation p.G139V 0.58 tolerated(0.07) benign(0.071) TCGA-ZF-AA4T-01 11 71193919 71193919 G A NADSYN1 Missense_Mutation p.R392H 0.19 deleterious(0.03) possibly_damaging(0.896) TCGA-ZF-AA4T-01 12 14982332 14982332 G A ART4 Silent p.V306V 0.57 TCGA-ZF-AA4T-01 12 25260999 25260999 A G LRMP 3'UTR 0.10 TCGA-ZF-AA4T-01 13 100172354 100172354 G A TM9SF2 Missense_Mutation p.G102R 0.32 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4T-01 13 48954344 48954345 - GC RB1 Frame_Shift_Ins p.E492Lfs*4 0.25 TCGA-ZF-AA4T-01 13 51825996 51825996 G A FAM124A Missense_Mutation p.V201M 0.47 deleterious(0.03) probably_damaging(1) TCGA-ZF-AA4T-01 14 101434447 101434447 C T RP11-909M7.3 Intron 0.30 TCGA-ZF-AA4T-01 14 45398298 45398298 G A KLHL28 Missense_Mutation p.S550L 0.40 deleterious(0.02) benign(0.023) TCGA-ZF-AA4T-01 14 64676294 64676294 G A SYNE2 Missense_Mutation p.E6180K 0.49 probably_damaging(0.999) TCGA-ZF-AA4T-01 14 77942241 77942241 C T ISM2 Silent p.T471T 0.61 TCGA-ZF-AA4T-01 14 95085752 95085752 A G SERPINA3 Silent p.E288E 0.13 TCGA-ZF-AA4T-01 14 96707837 96707837 A T BDKRB2 Missense_Mutation p.Q391L 0.17 deleterious_low_confidence(0.01) benign(0.022) TCGA-ZF-AA4T-01 15 22383415 22383415 A G OR4N4 Missense_Mutation p.R315G 0.25 deleterious_low_confidence(0.04) benign(0.152) TCGA-ZF-AA4T-01 15 51791053 51791054 - T DMXL2 Nonsense_Mutation p.Y1456* 0.11 TCGA-ZF-AA4T-01 15 75219205 75219205 C T COX5A Missense_Mutation p.D81N 0.20 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4T-01 16 57608752 57608752 C T GPR114 Missense_Mutation p.H412Y 0.21 deleterious(0.04) possibly_damaging(0.612) TCGA-ZF-AA4T-01 16 89799951 89799951 G A ZNF276 Missense_Mutation p.A448T 0.15 tolerated(0.05) probably_damaging(0.982) TCGA-ZF-AA4T-01 17 21205510 21205510 G A MAP2K3 Missense_Mutation p.R152Q 0.19 deleterious(0.02) benign(0.008) TCGA-ZF-AA4T-01 17 45376748 45376748 C T ITGB3 Missense_Mutation p.R589C 0.08 tolerated(0.07) benign(0.034) TCGA-ZF-AA4T-01 17 47895328 47895329 - TGTT KAT7 Frame_Shift_Ins p.K373Ffs*25 0.39 TCGA-ZF-AA4T-01 17 57754545 57754545 T C CLTC Missense_Mutation p.I931T 0.18 deleterious(0) possibly_damaging(0.838) TCGA-ZF-AA4T-01 17 60813158 60813158 C G MARCH10 Intron 0.26 TCGA-ZF-AA4T-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 18 42531812 42531812 C A SETBP1 Missense_Mutation p.A836D 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4T-01 18 42531813 42531813 C A SETBP1 Silent p.A836A 0.10 TCGA-ZF-AA4T-01 18 61308157 61308157 T C SERPINB4 Silent p.P140P 0.33 TCGA-ZF-AA4T-01 18 74091847 74091847 C A ZNF516 Silent p.R741R 0.23 TCGA-ZF-AA4T-01 18 74091848 74091848 C A ZNF516 Missense_Mutation p.R741L 0.22 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4T-01 19 10079123 10079123 C T COL5A3 Missense_Mutation p.G1418S 0.43 unknown(0) TCGA-ZF-AA4T-01 19 10262140 10262140 T C DNMT1 Silent p.K733K 0.11 TCGA-ZF-AA4T-01 19 11280572 11280572 C T KANK2 Missense_Mutation p.R836H 0.16 tolerated(1) benign(0.02) TCGA-ZF-AA4T-01 19 16634037 16634037 C T CHERP Silent p.P602P 0.17 TCGA-ZF-AA4T-01 19 34981329 34981329 G T WTIP Missense_Mutation p.C239F 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4T-01 19 48973672 48973672 G A CTC-273B12.7 Missense_Mutation p.E12K 0.53 tolerated(0.12) benign(0.005) TCGA-ZF-AA4T-01 19 48977495 48977495 C T CYTH2 Missense_Mutation p.P202S 0.08 deleterious(0.04) benign(0.302) TCGA-ZF-AA4T-01 19 49548451 49548451 C A CGB5 Missense_Mutation p.P133H 0.46 tolerated(0.14) benign(0.274) TCGA-ZF-AA4T-01 19 51875234 51875234 G A NKG7 Silent p.F133F 0.20 TCGA-ZF-AA4T-01 19 6456534 6456534 C T SLC25A23 Missense_Mutation p.R127Q 0.76 tolerated(0.32) benign(0.152) TCGA-ZF-AA4T-01 19 8995649 8995649 A G MUC16 Missense_Mutation p.I13780T 0.07 possibly_damaging(0.777) TCGA-ZF-AA4T-01 19 9075090 9075090 G T MUC16 Missense_Mutation p.T4119K 0.07 unknown(0) TCGA-ZF-AA4T-01 19 9271945 9271945 G C ZNF317 Missense_Mutation p.G542R 0.36 tolerated(0.42) probably_damaging(0.982) TCGA-ZF-AA4T-01 1 100661909 100661909 C G DBT Missense_Mutation p.D451H 0.34 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 1 110032990 110032990 G A ATXN7L2 Missense_Mutation p.R445Q 0.11 tolerated(0.32) probably_damaging(0.957) TCGA-ZF-AA4T-01 1 110888973 110888973 C G RBM15 3'UTR 0.19 TCGA-ZF-AA4T-01 1 110889010 110889010 G T RBM15 3'UTR 0.13 TCGA-ZF-AA4T-01 1 110889011 110889011 G T RBM15 3'UTR 0.13 TCGA-ZF-AA4T-01 1 111494532 111494532 T C LRIF1 Missense_Mutation p.K325R 0.12 deleterious(0.05) possibly_damaging(0.801) TCGA-ZF-AA4T-01 1 149885101 149885101 A G SV2A Missense_Mutation p.Y98H 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4T-01 1 150938614 150938614 G A CERS2 3'UTR 0.36 TCGA-ZF-AA4T-01 1 158735786 158735786 G T OR6N1 Silent p.P229P 0.11 TCGA-ZF-AA4T-01 1 158735787 158735787 G T OR6N1 Missense_Mutation p.P229H 0.11 deleterious(0.05) possibly_damaging(0.863) TCGA-ZF-AA4T-01 1 214837062 214837062 C T CENPF Silent p.V3090V 0.18 TCGA-ZF-AA4T-01 1 24463709 24463709 C T IL22RA1 Silent p.T89T 0.11 TCGA-ZF-AA4T-01 1 26448474 26448474 C A PDIK1L Missense_Mutation p.F144L 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-ZF-AA4T-01 1 26795524 26795525 CT - DHDDS Frame_Shift_Del p.S304Gfs*20 0.17 TCGA-ZF-AA4T-01 1 36479559 36479559 G A AGO3 Missense_Mutation p.R439Q 0.13 tolerated(0.07) possibly_damaging(0.714) TCGA-ZF-AA4T-01 1 45473170 45473170 C T HECTD3 Missense_Mutation p.R473H 0.10 deleterious(0.02) benign(0.097) TCGA-ZF-AA4T-01 1 47078624 47078624 A T MOB3C Missense_Mutation p.W176R 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 1 47078823 47078823 G A MOB3C Silent p.D109D 0.25 TCGA-ZF-AA4T-01 20 33719490 33719490 C T EDEM2 Missense_Mutation p.G267R 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4T-01 20 60963447 60963448 AG - RPS21 Intron 0.30 TCGA-ZF-AA4T-01 2 152529166 152529166 G A NEB Missense_Mutation p.S1339L 0.46 benign(0.258) TCGA-ZF-AA4T-01 2 153484918 153484918 G A FMNL2 Silent p.K757K 0.11 TCGA-ZF-AA4T-01 2 24056803 24056803 G A ATAD2B Silent p.L572L 0.07 TCGA-ZF-AA4T-01 2 26332692 26332692 G T RAB10 Missense_Mutation p.A82S 0.05 deleterious(0.01) probably_damaging(0.939) TCGA-ZF-AA4T-01 2 27604474 27604474 G A PPM1G Nonsense_Mutation p.R545* 0.22 TCGA-ZF-AA4T-01 2 58276000 58276000 C T VRK2 Missense_Mutation p.P12S 0.19 deleterious(0) possibly_damaging(0.901) TCGA-ZF-AA4T-01 3 108813884 108813884 C G MORC1 Missense_Mutation p.R152T 0.18 tolerated(0.11) possibly_damaging(0.696) TCGA-ZF-AA4T-01 3 121981099 121981099 C G CASR Missense_Mutation p.T406S 0.13 tolerated(0.21) possibly_damaging(0.857) TCGA-ZF-AA4T-01 3 133467353 133467353 C T TF Silent p.S47S 0.15 TCGA-ZF-AA4T-01 3 1363411 1363411 C A CNTN6 Missense_Mutation p.A280D 0.08 deleterious(0) probably_damaging(0.924) TCGA-ZF-AA4T-01 3 146171928 146171928 C A PLSCR2 Missense_Mutation p.G188V 0.09 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA4T-01 3 16640099 16640099 C T DAZL Missense_Mutation p.A24T 0.18 tolerated_low_confidence(0.29) benign(0.011) TCGA-ZF-AA4T-01 3 186370395 186370395 C T FETUB Missense_Mutation p.A375V 0.34 tolerated(0.32) benign(0.045) TCGA-ZF-AA4T-01 3 186915464 186915464 T A RTP1 Missense_Mutation p.M54K 0.10 deleterious(0) benign(0.375) TCGA-ZF-AA4T-01 3 46484998 46484998 T A LTF Missense_Mutation p.E530V 0.07 tolerated(0.12) benign(0.056) TCGA-ZF-AA4T-01 3 46497361 46497361 C T LTF Missense_Mutation p.A142T 0.06 deleterious(0.02) probably_damaging(0.933) TCGA-ZF-AA4T-01 3 48603971 48603971 C T COL7A1 Missense_Mutation p.R2777Q 0.25 probably_damaging(0.962) TCGA-ZF-AA4T-01 3 64636746 64636746 G A ADAMTS9 Silent p.T470T 0.35 TCGA-ZF-AA4T-01 3 78988065 78988065 C T ROBO1 Missense_Mutation p.R62H 0.05 deleterious(0.02) possibly_damaging(0.732) TCGA-ZF-AA4T-01 4 5141671 5141671 A G STK32B Missense_Mutation p.K31R 0.07 tolerated(0.22) probably_damaging(0.995) TCGA-ZF-AA4T-01 5 151202341 151202341 T G GLRA1 Missense_Mutation p.I423L 0.52 deleterious(0.02) probably_damaging(0.923) TCGA-ZF-AA4T-01 5 178506308 178506308 G C ZNF354C Missense_Mutation p.R292T 0.10 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 5 39382886 39382886 T C DAB2 Missense_Mutation p.K392R 0.09 tolerated(0.13) benign(0.211) TCGA-ZF-AA4T-01 5 71756826 71756826 G C ZNF366 Silent p.P166P 0.55 TCGA-ZF-AA4T-01 5 71756827 71756827 G T ZNF366 Missense_Mutation p.P166H 0.56 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-ZF-AA4T-01 6 26250823 26250823 G C HIST1H3F Missense_Mutation p.T4R 0.13 deleterious_low_confidence(0.01) benign(0.025) TCGA-ZF-AA4T-01 6 28493812 28493812 G A GPX5 Missense_Mutation p.V8I 0.24 tolerated_low_confidence(0.17) benign(0.016) TCGA-ZF-AA4T-01 6 34101011 34101011 C T GRM4 Missense_Mutation p.R88H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4T-01 6 39196714 39196714 G T KCNK5 Missense_Mutation p.D58E 0.31 tolerated(0.65) benign(0.014) TCGA-ZF-AA4T-01 6 39855301 39855301 C T DAAM2 Missense_Mutation p.R665C 0.11 deleterious(0) probably_damaging(0.983) TCGA-ZF-AA4T-01 7 100456488 100456488 C T SLC12A9 Silent p.A263A 0.14 TCGA-ZF-AA4T-01 7 127978360 127978360 T C RBM28 Missense_Mutation p.K162R 0.27 tolerated(0.13) benign(0.097) TCGA-ZF-AA4T-01 7 156755828 156755828 A G NOM1 Missense_Mutation p.N624D 0.21 tolerated(0.44) benign(0.004) TCGA-ZF-AA4T-01 7 20795130 20795130 C A ABCB5 Missense_Mutation p.N1219K 0.25 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA4T-01 7 21945172 21945172 T A CDCA7L Missense_Mutation p.L333F 0.04 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4T-01 7 73245413 73245413 C T CLDN4 5'UTR 0.31 TCGA-ZF-AA4T-01 8 104444893 104444893 T G DCAF13 Missense_Mutation p.L389V 0.05 deleterious(0) possibly_damaging(0.805) TCGA-ZF-AA4T-01 8 104444895 104444895 A T DCAF13 Missense_Mutation p.L389F 0.05 deleterious(0) probably_damaging(0.965) TCGA-ZF-AA4T-01 8 107782373 107782373 C A ABRA Missense_Mutation p.A16S 0.08 tolerated(0.09) benign(0.119) TCGA-ZF-AA4T-01 8 108972946 108972946 C T RSPO2 Missense_Mutation p.C128Y 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 8 141685581 141685581 T C PTK2 Missense_Mutation p.I860M 0.48 deleterious(0.03) benign(0.356) TCGA-ZF-AA4T-01 8 145540729 145540729 T A DGAT1 Missense_Mutation p.M402L 0.15 tolerated(1) benign(0.001) TCGA-ZF-AA4T-01 8 17157323 17157323 G T MTMR7 3'UTR 0.37 TCGA-ZF-AA4T-01 8 17157324 17157324 G T MTMR7 3'UTR 0.37 TCGA-ZF-AA4T-01 8 21767264 21767264 C A DOK2 Missense_Mutation p.R266L 0.09 tolerated(0.22) benign(0.018) TCGA-ZF-AA4T-01 8 24324572 24324572 A G ADAM7 Intron 0.16 TCGA-ZF-AA4T-01 8 27737193 27737193 C A SCARA5 Missense_Mutation p.G415V 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 8 27737194 27737194 C T SCARA5 Missense_Mutation p.G415S 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-AA4T-01 8 29202944 29202944 C A DUSP4 Intron 0.29 TCGA-ZF-AA4T-01 9 120475132 120475132 A G TLR4 Silent p.V242V 0.14 TCGA-ZF-AA4T-01 9 21481316 21481316 C T IFNE Silent p.L126L 0.09 TCGA-ZF-AA4T-01 9 77698025 77698025 T G NMRK1 Missense_Mutation p.T3P 0.18 tolerated(0.07) benign(0.024) TCGA-ZF-AA4T-01 X 111000891 111000891 C T ALG13 Missense_Mutation p.P1017S 0.55 tolerated(0.12) possibly_damaging(0.796) TCGA-ZF-AA4T-01 X 1506239 1506239 G A SLC25A6 Silent p.A224A 0.48 TCGA-ZF-AA4T-01 X 54784854 54784854 C T ITIH6 Silent p.E551E 0.31 TCGA-ZF-AA4T-01 X 84634288 84634289 - C POF1B Frame_Shift_Ins p.P58Afs*61 0.17 TCGA-ZF-AA4U-01 10 104489106 104489106 A G SFXN2 Silent p.T154T 0.47 TCGA-ZF-AA4U-01 10 16967689 16967689 G A CUBN Missense_Mutation p.S2119F 0.64 deleterious(0.05) probably_damaging(0.998) TCGA-ZF-AA4U-01 10 94215367 94215367 T C IDE Missense_Mutation p.D977G 0.23 tolerated(0.11) benign(0) TCGA-ZF-AA4U-01 11 117866399 117866399 C T IL10RA Missense_Mutation p.R262C 0.32 deleterious(0) possibly_damaging(0.88) TCGA-ZF-AA4U-01 11 124266950 124266950 G C OR8B3 Missense_Mutation p.Q100E 0.15 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-ZF-AA4U-01 11 124792321 124792321 C T HEPACAM Missense_Mutation p.R304Q 0.29 deleterious(0.03) possibly_damaging(0.59) TCGA-ZF-AA4U-01 12 100042312 100042312 G C FAM71C Silent p.L120L 0.27 TCGA-ZF-AA4U-01 12 40076785 40076785 A G C12orf40 Silent p.P353P 0.54 TCGA-ZF-AA4U-01 12 69746059 69746059 C T LYZ Missense_Mutation p.P121S 0.04 tolerated(0.05) benign(0.129) TCGA-ZF-AA4U-01 12 69746969 69746969 C T LYZ Silent p.V139V 0.05 TCGA-ZF-AA4U-01 12 69747070 69747070 C A LYZ 3'UTR 0.04 TCGA-ZF-AA4U-01 12 69747092 69747092 C G LYZ 3'UTR 0.05 TCGA-ZF-AA4U-01 13 107145542 107145542 C A EFNB2 Missense_Mutation p.G283V 0.40 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA4U-01 13 70370981 70370981 C G KLHL1 Missense_Mutation p.V510L 0.44 tolerated(0.07) probably_damaging(0.931) TCGA-ZF-AA4U-01 14 105420733 105420733 C T AHNAK2 Missense_Mutation p.R352H 0.38 benign(0.032) TCGA-ZF-AA4U-01 14 93397861 93397861 C T CHGA Nonsense_Mutation p.Q208* 0.33 TCGA-ZF-AA4U-01 14 96798943 96798943 G C ATG2B Silent p.L419L 0.46 TCGA-ZF-AA4U-01 15 25953365 25953365 G A ATP10A Silent p.R809R 0.21 TCGA-ZF-AA4U-01 15 25953366 25953366 C A ATP10A Missense_Mutation p.R809L 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4U-01 15 75969200 75969200 C T CSPG4 Missense_Mutation p.G1887D 0.78 tolerated(0.67) benign(0.001) TCGA-ZF-AA4U-01 16 1034725 1034725 C T SOX8 Missense_Mutation p.P227L 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4U-01 16 20329597 20329598 GT - GP2 Frame_Shift_Del p.T391Lfs*4 0.19 TCGA-ZF-AA4U-01 16 20944671 20944671 T C DNAH3 Silent p.K4052K 0.63 TCGA-ZF-AA4U-01 16 23098411 23098411 A C USP31 Splice_Site p.X541_splice 0.79 TCGA-ZF-AA4U-01 16 28844383 28844383 C A ATXN2L Missense_Mutation p.Q555K 0.33 deleterious(0.02) possibly_damaging(0.554) TCGA-ZF-AA4U-01 16 28844818 28844818 C T ATXN2L Silent p.L672L 0.28 TCGA-ZF-AA4U-01 16 67331479 67331479 G T KCTD19 Silent p.I358I 0.25 TCGA-ZF-AA4U-01 16 70509255 70509255 G A FUK Missense_Mutation p.A794T 0.57 deleterious(0) possibly_damaging(0.795) TCGA-ZF-AA4U-01 17 3828737 3828737 T C ATP2A3 Splice_Site p.X1047_splice 0.21 TCGA-ZF-AA4U-01 17 74639685 74639685 G C ST6GALNAC1 Missense_Mutation p.S12R 0.34 benign(0.001) TCGA-ZF-AA4U-01 18 56586092 56586092 G A ZNF532 Silent p.T191T 0.60 TCGA-ZF-AA4U-01 19 11144846 11144846 C T SMARCA4 Silent p.A1307A 0.35 TCGA-ZF-AA4U-01 19 13246329 13246329 C T NACC1 Missense_Mutation p.T103M 0.31 deleterious(0) probably_damaging(1) TCGA-ZF-AA4U-01 19 40398380 40398380 C T FCGBP Missense_Mutation p.R2196H 0.11 possibly_damaging(0.812) TCGA-ZF-AA4U-01 19 41600941 41600941 C T CYP2A13 Silent p.P413P 0.35 TCGA-ZF-AA4U-01 19 4247149 4247149 G T CCDC94 Silent p.S2S 0.21 TCGA-ZF-AA4U-01 19 52003600 52003600 C - SIGLEC12 Intron 0.29 TCGA-ZF-AA4U-01 19 55494473 55494473 T C NLRP2 Silent p.D469D 0.34 TCGA-ZF-AA4U-01 19 58050032 58050032 G A ZNF549 Missense_Mutation p.E554K 0.41 deleterious(0.05) possibly_damaging(0.856) TCGA-ZF-AA4U-01 1 11008369 11008369 C T C1orf127 Missense_Mutation p.R608H 0.44 tolerated(1) benign(0.001) TCGA-ZF-AA4U-01 1 144917523 144917523 G A PDE4DIP Silent p.L527L 0.22 TCGA-ZF-AA4U-01 1 152275948 152275948 C T FLG Missense_Mutation p.G3805E 0.19 unknown(0) TCGA-ZF-AA4U-01 1 154931569 154931569 G C PYGO2 Missense_Mutation p.P303A 0.50 tolerated(0.56) possibly_damaging(0.811) TCGA-ZF-AA4U-01 1 155264471 155264471 C T PKLR Missense_Mutation p.G256E 0.36 tolerated(0.07) possibly_damaging(0.782) TCGA-ZF-AA4U-01 1 180240437 180240437 G A LHX4 Intron 0.31 TCGA-ZF-AA4U-01 1 222716982 222716982 T C HHIPL2 Missense_Mutation p.I291V 0.50 tolerated(1) benign(0.058) TCGA-ZF-AA4U-01 1 228400285 228400285 C T OBSCN Silent p.P267P 0.10 TCGA-ZF-AA4U-01 20 34242499 34242499 G A RBM12 Missense_Mutation p.P249L 0.09 deleterious(0.05) unknown(0) TCGA-ZF-AA4U-01 2 178098888 178098888 T G NFE2L2 Missense_Mutation p.K53Q 0.54 tolerated(0.1) benign(0.028) TCGA-ZF-AA4U-01 2 201355082 201355082 C T KCTD18 Missense_Mutation p.G341E 0.11 tolerated_low_confidence(0.45) benign(0.003) TCGA-ZF-AA4U-01 2 20647419 20647419 G T RHOB Missense_Mutation p.D65Y 0.52 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4U-01 2 33518340 33518340 C T LTBP1 Missense_Mutation p.H1076Y 0.37 tolerated(0.51) possibly_damaging(0.633) TCGA-ZF-AA4U-01 2 74329260 74329260 A G TET3 Missense_Mutation p.Y1647C 0.45 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4U-01 3 127642758 127642758 C A KBTBD12 Nonsense_Mutation p.S285* 0.44 TCGA-ZF-AA4U-01 3 128780644 128780644 C T GP9 Missense_Mutation p.P21L 0.69 deleterious(0) probably_damaging(1) TCGA-ZF-AA4U-01 3 13415345 13415345 C T NUP210 Nonsense_Mutation p.W487* 0.38 TCGA-ZF-AA4U-01 3 153220372 153220372 A C C3orf79 3'UTR 0.40 TCGA-ZF-AA4U-01 3 160138554 160138554 A G SMC4 Silent p.K628K 0.15 TCGA-ZF-AA4U-01 3 175189438 175189438 G T NAALADL2 Missense_Mutation p.K515N 0.23 tolerated(0.07) benign(0.024) TCGA-ZF-AA4U-01 3 178951955 178951955 A G PIK3CA Missense_Mutation p.M1004V 0.38 deleterious(0.01) possibly_damaging(0.578) TCGA-ZF-AA4U-01 3 32745388 32745388 A G CNOT10 Silent p.T77T 0.23 TCGA-ZF-AA4U-01 3 47270092 47270092 A G KIF9 3'UTR 0.57 TCGA-ZF-AA4U-01 3 64640053 64640053 G A ADAMTS9 Missense_Mutation p.T431M 0.43 deleterious(0) probably_damaging(1) TCGA-ZF-AA4U-01 3 71026115 71026115 G A FOXP1 Nonsense_Mutation p.R505* 0.39 TCGA-ZF-AA4U-01 3 88040764 88040764 C T HTR1F Missense_Mutation p.R289W 0.17 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4U-01 4 1806089 1806089 G T FGFR3 Missense_Mutation p.G372C 0.52 tolerated(0.07) benign(0.029) TCGA-ZF-AA4U-01 4 24854691 24854691 T G CCDC149 Intron 0.39 TCGA-ZF-AA4U-01 4 30724739 30724739 T C PCDH7 Silent p.G565G 0.43 TCGA-ZF-AA4U-01 4 57377372 57377372 G A ARL9 5'UTR 0.47 TCGA-ZF-AA4U-01 5 136973012 136973012 C T KLHL3 Missense_Mutation p.R431Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4U-01 5 19503196 19503196 G A CDH18 Missense_Mutation p.T512I 0.43 tolerated(0.16) benign(0.003) TCGA-ZF-AA4U-01 5 68902994 68902994 C A RP11-848G14.2 RNA 0.39 TCGA-ZF-AA4U-01 6 158492757 158492757 C T SYNJ2 Silent p.A688A 0.39 TCGA-ZF-AA4U-01 6 161470145 161470145 G A MAP3K4 Missense_Mutation p.D281N 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4U-01 6 30043392 30043392 C A RNF39 Nonsense_Mutation p.E59* 0.55 TCGA-ZF-AA4U-01 6 73108737 73108737 G A RIMS1 Missense_Mutation p.D1601N 0.57 deleterious(0) possibly_damaging(0.752) TCGA-ZF-AA4U-01 7 100361665 100361665 C T ZAN Silent p.H1371H 0.40 TCGA-ZF-AA4U-01 7 146829392 146829392 C T CNTNAP2 Missense_Mutation p.A380V 0.20 deleterious(0.03) benign(0.039) TCGA-ZF-AA4U-01 7 5347790 5347790 C T TNRC18 Missense_Mutation p.E2952K 0.40 unknown(0) TCGA-ZF-AA4U-01 7 57509967 57509967 C T ZNF716 5'UTR 0.42 TCGA-ZF-AA4U-01 8 124250060 124250060 G A C8orf76 Missense_Mutation p.A112V 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-AA4U-01 8 124382176 124382176 A G ATAD2 Silent p.D272D 0.14 TCGA-ZF-AA4U-01 8 56435849 56435849 C T XKR4 Missense_Mutation p.A339V 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-ZF-AA4U-01 8 77767603 77767603 G A ZFHX4 Missense_Mutation p.G2816R 0.56 probably_damaging(0.999) TCGA-ZF-AA4U-01 9 114337106 114337106 G A PTGR1 Missense_Mutation p.S223L 0.93 deleterious(0.02) benign(0.095) TCGA-ZF-AA4U-01 9 8317783 8317783 G A PTPRD 3'UTR 0.82 TCGA-ZF-AA4V-01 10 101486767 101486767 C G COX15 Missense_Mutation p.M180I 0.24 deleterious(0.04) benign(0.056) TCGA-ZF-AA4V-01 10 103899303 103899303 G A PPRC1 Silent p.L346L 0.23 TCGA-ZF-AA4V-01 10 103899304 103899304 G A PPRC1 Missense_Mutation p.E347K 0.23 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA4V-01 10 104128191 104128191 G A GBF1 Silent p.Q952Q 0.33 TCGA-ZF-AA4V-01 10 104211153 104211153 C G C10orf95 Missense_Mutation p.E25Q 0.23 tolerated_low_confidence(0.28) possibly_damaging(0.607) TCGA-ZF-AA4V-01 10 106037865 106037865 A G GSTO2 Silent p.L119L 0.28 TCGA-ZF-AA4V-01 10 106139804 106139804 C T CCDC147 Silent p.V397V 0.20 TCGA-ZF-AA4V-01 10 106960959 106960959 T G SORCS3 Missense_Mutation p.S737A 0.27 tolerated(0.33) benign(0.007) TCGA-ZF-AA4V-01 10 111879036 111879036 A G ADD3 Missense_Mutation p.Y262C 0.37 tolerated(0.08) benign(0.26) TCGA-ZF-AA4V-01 10 113928198 113928198 C A GPAM Missense_Mutation p.A327S 0.26 tolerated(0.31) possibly_damaging(0.747) TCGA-ZF-AA4V-01 10 116735183 116735183 C G TRUB1 3'UTR 0.26 TCGA-ZF-AA4V-01 10 12159682 12159682 C T DHTKD1 Missense_Mutation p.S777L 0.25 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4V-01 10 12257760 12257760 G A CDC123 Missense_Mutation p.A87T 0.23 tolerated(0.68) benign(0.001) TCGA-ZF-AA4V-01 10 123843700 123843700 C T TACC2 Missense_Mutation p.P562L 0.33 probably_damaging(0.937) TCGA-ZF-AA4V-01 10 13361306 13361306 C T SEPHS1 Missense_Mutation p.E339K 0.22 deleterious(0.01) benign(0.354) TCGA-ZF-AA4V-01 10 134014488 134014488 G C DPYSL4 Splice_Site p.X370_splice 0.50 TCGA-ZF-AA4V-01 10 16893433 16893433 T C CUBN Missense_Mutation p.Q3155R 0.16 deleterious(0.04) benign(0.269) TCGA-ZF-AA4V-01 10 20568754 20568754 C T PLXDC2 3'UTR 0.12 TCGA-ZF-AA4V-01 10 21117535 21117535 A G NEBL Missense_Mutation p.M567T 0.29 tolerated(0.81) possibly_damaging(0.45) TCGA-ZF-AA4V-01 10 24873966 24873966 C T ARHGAP21 Missense_Mutation p.R1751K 0.22 tolerated(0.1) benign(0.036) TCGA-ZF-AA4V-01 10 26462887 26462887 A C MYO3A Missense_Mutation p.K1232Q 0.22 tolerated_low_confidence(0.13) benign(0.025) TCGA-ZF-AA4V-01 10 26482183 26482183 C A MYO3A Silent p.P1496P 0.41 TCGA-ZF-AA4V-01 10 38407469 38407469 G A ZNF37A Missense_Mutation p.E464K 0.30 deleterious(0) probably_damaging(0.981) TCGA-ZF-AA4V-01 10 52834292 52834292 G T PRKG1 5'UTR 0.33 TCGA-ZF-AA4V-01 10 5827169 5827169 A G GDI2 Missense_Mutation p.Y219H 0.27 tolerated(0.07) benign(0.161) TCGA-ZF-AA4V-01 10 72324257 72324257 C T PALD1 Silent p.F800F 0.34 TCGA-ZF-AA4V-01 10 76735740 76735740 C G KAT6B Missense_Mutation p.H549D 0.31 possibly_damaging(0.637) TCGA-ZF-AA4V-01 10 82269104 82269104 C G TSPAN14 Silent p.A109A 0.41 TCGA-ZF-AA4V-01 10 85984284 85984284 C G LRIT2 Missense_Mutation p.G233R 0.33 tolerated(0.06) benign(0.049) TCGA-ZF-AA4V-01 10 86017692 86017692 G A RGR Missense_Mutation p.G229D 0.25 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA4V-01 10 88419770 88419770 C T OPN4 Missense_Mutation p.L318F 0.30 deleterious(0.03) benign(0.047) TCGA-ZF-AA4V-01 10 89265221 89265221 C T MINPP1 Silent p.S183S 0.33 TCGA-ZF-AA4V-01 10 90750560 90750560 C T FAS 5'UTR 0.38 TCGA-ZF-AA4V-01 10 93723860 93723860 G C BTAF1 Missense_Mutation p.W477C 0.41 deleterious(0.05) probably_damaging(0.971) TCGA-ZF-AA4V-01 10 95360732 95360732 C T RBP4 Silent p.A18A 0.25 TCGA-ZF-AA4V-01 10 96117057 96117057 C T NOC3L Missense_Mutation p.E128K 0.28 tolerated(0.52) benign(0.269) TCGA-ZF-AA4V-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.32 TCGA-ZF-AA4V-01 10 96466665 96466665 A T CYP2C18 Missense_Mutation p.D256V 0.27 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA4V-01 10 98078233 98078233 T C DNTT Missense_Mutation p.C110R 0.24 deleterious(0.03) probably_damaging(0.956) TCGA-ZF-AA4V-01 10 99215400 99215400 C T ZDHHC16 Intron 0.30 TCGA-ZF-AA4V-01 11 101341920 101341920 C T TRPC6 Missense_Mutation p.M801I 0.30 tolerated(0.24) probably_damaging(0.943) TCGA-ZF-AA4V-01 11 102195711 102195711 G C BIRC3 Missense_Mutation p.L157F 0.33 tolerated(0.2) benign(0.005) TCGA-ZF-AA4V-01 11 102667496 102667496 T A MMP1 Missense_Mutation p.D175V 0.22 deleterious(0) possibly_damaging(0.747) TCGA-ZF-AA4V-01 11 117984006 117984006 T C TMPRSS4 Missense_Mutation p.W256R 0.46 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4V-01 11 118376222 118376222 C T KMT2A Silent p.S3205S 0.27 TCGA-ZF-AA4V-01 11 118780716 118780716 G A BCL9L 5'UTR 0.62 TCGA-ZF-AA4V-01 11 120312888 120312888 C T ARHGEF12 Nonsense_Mutation p.Q427* 0.17 TCGA-ZF-AA4V-01 11 123900584 123900584 C T OR10G8 Silent p.F85F 0.31 TCGA-ZF-AA4V-01 11 124252488 124252488 A T OR8B2 Missense_Mutation p.F251Y 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.772) TCGA-ZF-AA4V-01 11 125764064 125764064 A G PUS3 Silent p.N354N 0.41 TCGA-ZF-AA4V-01 11 17757811 17757811 G A KCNC1 Missense_Mutation p.E88K 0.29 deleterious(0) possibly_damaging(0.87) TCGA-ZF-AA4V-01 11 19251237 19251237 T G E2F8 Missense_Mutation p.T553P 0.31 tolerated(0.26) benign(0.421) TCGA-ZF-AA4V-01 11 20117311 20117312 AA - NAV2 Frame_Shift_Del p.K2063Rfs*69 0.26 TCGA-ZF-AA4V-01 11 233208 233208 C T SIRT3 Missense_Mutation p.G161R 0.28 deleterious(0.01) benign(0.043) TCGA-ZF-AA4V-01 11 3659875 3659875 G A ART5 3'UTR 0.28 TCGA-ZF-AA4V-01 11 43464907 43464907 G A TTC17 Missense_Mutation p.E762K 0.34 tolerated(0.2) possibly_damaging(0.601) TCGA-ZF-AA4V-01 11 47201882 47201882 G A PACSIN3 Missense_Mutation p.S153F 0.30 deleterious(0) possibly_damaging(0.547) TCGA-ZF-AA4V-01 11 55340025 55340025 T G OR4C16 Missense_Mutation p.V141G 0.29 deleterious(0.04) benign(0.033) TCGA-ZF-AA4V-01 11 55681567 55681567 G A OR5W2 Silent p.F164F 0.16 TCGA-ZF-AA4V-01 11 5618116 5618116 C G TRIM6 5'UTR 0.34 TCGA-ZF-AA4V-01 11 57114101 57114101 G A P2RX3 Missense_Mutation p.G68E 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 11 57310113 57310113 G C SMTNL1 Splice_Site p.X18_splice 0.35 TCGA-ZF-AA4V-01 11 591423 591423 T A PHRF1 Missense_Mutation p.C154S 0.41 tolerated(0.45) benign(0) TCGA-ZF-AA4V-01 11 59620726 59620726 T C TCN1 Missense_Mutation p.N397S 0.35 deleterious(0.04) benign(0.1) TCGA-ZF-AA4V-01 11 62566083 62566083 G A NXF1 Intron 0.24 TCGA-ZF-AA4V-01 11 64879113 64879113 C A VPS51 3'UTR 0.50 TCGA-ZF-AA4V-01 11 64883889 64883889 T G ZNHIT2 3'UTR 0.32 TCGA-ZF-AA4V-01 11 64888341 64888341 C T FAU Intron 0.35 TCGA-ZF-AA4V-01 11 64939750 64939750 C T SPDYC Missense_Mutation p.R98C 0.36 deleterious(0) possibly_damaging(0.861) TCGA-ZF-AA4V-01 11 66384451 66384451 C T RBM14-RBM4 Missense_Mutation p.S87L 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-ZF-AA4V-01 11 67160162 67160162 A G RAD9A Missense_Mutation p.Y48C 0.21 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4V-01 11 67559951 67559951 G A FAM86C2P RNA 0.28 TCGA-ZF-AA4V-01 11 7064634 7064634 T C NLRP14 Silent p.S459S 0.43 TCGA-ZF-AA4V-01 11 72018299 72018299 C A CLPB Splice_Site p.X386_splice 0.23 TCGA-ZF-AA4V-01 11 72492299 72492299 C G STARD10 5'UTR 0.33 TCGA-ZF-AA4V-01 11 72553845 72553845 C T FCHSD2 Missense_Mutation p.D583N 0.30 tolerated(0.1) possibly_damaging(0.886) TCGA-ZF-AA4V-01 11 77734251 77734251 C T KCTD14 Silent p.T15T 0.32 TCGA-ZF-AA4V-01 11 82550305 82550305 G C PRCP Missense_Mutation p.Q383E 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 11 92087888 92087888 C T FAT3 Silent p.V870V 0.39 TCGA-ZF-AA4V-01 12 108145930 108145930 T C PRDM4 Missense_Mutation p.I130V 0.20 tolerated_low_confidence(0.28) benign(0.022) TCGA-ZF-AA4V-01 12 110345389 110345389 G A TCHP Missense_Mutation p.R195Q 0.19 deleterious(0.04) benign(0.236) TCGA-ZF-AA4V-01 12 11213998 11213998 T A TAS2R46 Missense_Mutation p.Y299F 0.30 tolerated(0.52) benign(0.003) TCGA-ZF-AA4V-01 12 112326395 112326395 C T MAPKAPK5 Missense_Mutation p.P358L 0.24 deleterious(0.01) probably_damaging(0.911) TCGA-ZF-AA4V-01 12 122359356 122359356 G A WDR66 Missense_Mutation p.E49K 0.49 tolerated_low_confidence(0.05) benign(0.016) TCGA-ZF-AA4V-01 12 123290752 123290752 G A CCDC62 Silent p.L587L 0.15 TCGA-ZF-AA4V-01 12 123746266 123746266 C T CDK2AP1 3'UTR 0.27 TCGA-ZF-AA4V-01 12 124155812 124155812 C G TCTN2 Missense_Mutation p.L9V 0.12 tolerated_low_confidence(0.31) unknown(0) TCGA-ZF-AA4V-01 12 12588569 12588569 G A LOH12CR1 Silent p.L70L 0.25 TCGA-ZF-AA4V-01 12 131620621 131620621 G C GPR133 Silent p.L769L 0.36 TCGA-ZF-AA4V-01 12 133306821 133306821 C T ANKLE2 Missense_Mutation p.E643K 0.23 deleterious(0.01) benign(0.445) TCGA-ZF-AA4V-01 12 133454175 133454175 C T CHFR Missense_Mutation p.E67K 0.38 tolerated(0.07) benign(0.018) TCGA-ZF-AA4V-01 12 15652490 15652490 A G PTPRO Missense_Mutation p.Y208C 0.30 deleterious_low_confidence(0.02) benign(0.006) TCGA-ZF-AA4V-01 12 18234052 18234052 A T RERGL 3'UTR 0.17 TCGA-ZF-AA4V-01 12 27933917 27933917 C T KLHL42 Silent p.S218S 0.32 TCGA-ZF-AA4V-01 12 416230 416230 G A KDM5A Missense_Mutation p.S1319F 0.24 tolerated(0.06) benign(0.023) TCGA-ZF-AA4V-01 12 431614 431614 G A KDM5A Nonsense_Mutation p.Q799* 0.30 TCGA-ZF-AA4V-01 12 44338099 44338099 T G TMEM117 Missense_Mutation p.F122V 0.37 tolerated(0.2) benign(0.26) TCGA-ZF-AA4V-01 12 48499303 48499303 G A PFKM 5'Flank 0.43 TCGA-ZF-AA4V-01 12 48537866 48537866 A G PFKM Missense_Mutation p.I711V 0.27 tolerated(0.14) benign(0.081) TCGA-ZF-AA4V-01 12 4919742 4919742 G A KCNA6 Missense_Mutation p.V179I 0.28 tolerated(0.3) probably_damaging(0.987) TCGA-ZF-AA4V-01 12 49412353 49412353 G A PRKAG1 Intron 0.38 TCGA-ZF-AA4V-01 12 53342927 53342927 G A KRT18 5'UTR 0.41 TCGA-ZF-AA4V-01 12 53607463 53607463 A G RARG Missense_Mutation p.Y279H 0.31 deleterious(0) possibly_damaging(0.688) TCGA-ZF-AA4V-01 12 54925978 54925978 C T NCKAP1L Missense_Mutation p.L936F 0.50 deleterious(0) probably_damaging(0.97) TCGA-ZF-AA4V-01 12 54925981 54925981 A G NCKAP1L Missense_Mutation p.M937V 0.54 tolerated(0.18) benign(0.058) TCGA-ZF-AA4V-01 12 55524293 55524293 G A OR9K2 Silent p.V247V 0.42 TCGA-ZF-AA4V-01 12 56492429 56492429 C T ERBB3 Intron 0.50 TCGA-ZF-AA4V-01 12 56492437 56492437 C T ERBB3 Intron 0.52 TCGA-ZF-AA4V-01 12 56531979 56531979 G C ESYT1 Missense_Mutation p.E764Q 0.39 tolerated(0.11) benign(0.322) TCGA-ZF-AA4V-01 12 58015503 58015503 C T SLC26A10 Missense_Mutation p.R196W 0.32 deleterious(0.01) benign(0.007) TCGA-ZF-AA4V-01 12 6559461 6559461 C T CD27 Missense_Mutation p.R131W 0.10 tolerated(0.19) benign(0) TCGA-ZF-AA4V-01 12 66712454 66712454 A G HELB Silent p.E679E 0.15 TCGA-ZF-AA4V-01 12 70065245 70065245 A G BEST3 Missense_Mutation p.C355R 0.04 tolerated(0.66) benign(0.002) TCGA-ZF-AA4V-01 12 70206605 70206605 A T RAB3IP Missense_Mutation p.K409I 0.90 deleterious(0) possibly_damaging(0.707) TCGA-ZF-AA4V-01 12 78444867 78444873 GATATAT - NAV3 Frame_Shift_Del p.Y820Vfs*20 0.45 TCGA-ZF-AA4V-01 12 80732942 80732942 A G OTOGL Missense_Mutation p.T1641A 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 12 81536974 81536974 C T ACSS3 Missense_Mutation p.S290L 0.45 deleterious(0) probably_damaging(0.926) TCGA-ZF-AA4V-01 12 85255324 85255324 G A SLC6A15 3'UTR 0.40 TCGA-ZF-AA4V-01 12 85694985 85694985 C T ALX1 Missense_Mutation p.S238L 0.19 tolerated(0.07) probably_damaging(0.996) TCGA-ZF-AA4V-01 12 88477726 88477726 T C CEP290 Silent p.Q1570Q 0.40 TCGA-ZF-AA4V-01 12 91572179 91572179 C G DCN Missense_Mutation p.G51R 0.24 tolerated(0.36) benign(0.27) TCGA-ZF-AA4V-01 12 99020532 99020532 C T IKBIP Missense_Mutation p.E104K 0.16 deleterious(0) possibly_damaging(0.731) TCGA-ZF-AA4V-01 12 994563 994563 G C WNK1 Missense_Mutation p.K1531N 0.21 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-ZF-AA4V-01 13 103443624 103443624 G C KDELC1 Missense_Mutation p.L277V 0.35 deleterious(0.04) probably_damaging(0.969) TCGA-ZF-AA4V-01 13 110864213 110864213 C G COL4A1 Intron 0.31 TCGA-ZF-AA4V-01 13 113744221 113744221 C G MCF2L Intron 0.29 TCGA-ZF-AA4V-01 13 113979932 113979932 G A GRTP1 Intron 0.52 TCGA-ZF-AA4V-01 13 114523901 114523901 G A GAS6 Missense_Mutation p.A658V 0.36 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4V-01 13 114523944 114523944 T C GAS6 Missense_Mutation p.M644V 0.42 deleterious(0) probably_damaging(0.914) TCGA-ZF-AA4V-01 13 20398869 20398869 A C ZMYM5 Missense_Mutation p.D586E 0.50 deleterious(0) probably_damaging(0.939) TCGA-ZF-AA4V-01 13 25419126 25419126 C G RNF17 Missense_Mutation p.L1004V 0.34 tolerated(0.26) possibly_damaging(0.724) TCGA-ZF-AA4V-01 13 32913668 32913668 G A BRCA2 Missense_Mutation p.E1726K 0.26 tolerated(0.1) benign(0.098) TCGA-ZF-AA4V-01 13 37269559 37269559 G A SERTM1 3'UTR 0.30 TCGA-ZF-AA4V-01 13 41635739 41635739 C T WBP4 5'UTR 0.38 TCGA-ZF-AA4V-01 13 41767785 41767785 G A KBTBD7 Silent p.L203L 0.26 TCGA-ZF-AA4V-01 13 42740773 42740773 C T DGKH Nonsense_Mutation p.Q361* 0.37 TCGA-ZF-AA4V-01 13 48947629 48947629 G A RB1 Splice_Site p.X405_splice 0.25 TCGA-ZF-AA4V-01 13 48951051 48951051 A G RB1 Intron 0.24 TCGA-ZF-AA4V-01 13 52718874 52718874 G C NEK3 Silent p.L252L 0.26 TCGA-ZF-AA4V-01 13 53422409 53422409 T C PCDH8 Missense_Mutation p.M55V 0.30 tolerated(0.42) benign(0.001) TCGA-ZF-AA4V-01 13 61102816 61102816 C T TDRD3 Missense_Mutation p.P486L 0.26 tolerated(0.1) benign(0.004) TCGA-ZF-AA4V-01 13 70681804 70681804 C T KLHL1 Missense_Mutation p.D10N 0.25 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-ZF-AA4V-01 13 84453714 84453714 C G SLITRK1 Silent p.L643L 0.34 TCGA-ZF-AA4V-01 13 98086979 98086979 C T RAP2A Silent p.V85V 0.20 TCGA-ZF-AA4V-01 14 102496233 102496233 G T DYNC1H1 Silent p.L3240L 0.61 TCGA-ZF-AA4V-01 14 102496504 102496504 G A DYNC1H1 Missense_Mutation p.M3256I 0.56 benign(0.003) TCGA-ZF-AA4V-01 14 106641816 106641816 G A IGHV1-18 Missense_Mutation p.P33L 0.74 deleterious(0.01) possibly_damaging(0.537) TCGA-ZF-AA4V-01 14 20612488 20612488 G A OR4N5 Silent p.L198L 0.24 TCGA-ZF-AA4V-01 14 20767554 20767554 C T TTC5 Silent p.R150R 0.20 TCGA-ZF-AA4V-01 14 22363137 22363137 G A TRAV8-4 Missense_Mutation p.E90K 0.50 tolerated(0.15) benign(0.037) TCGA-ZF-AA4V-01 14 23371437 23371437 G A RBM23 Missense_Mutation p.S362L 0.54 deleterious(0) benign(0.011) TCGA-ZF-AA4V-01 14 23894580 23894580 G A MYH7 Silent p.D778D 0.22 TCGA-ZF-AA4V-01 14 24505784 24505784 C T RP11-468E2.9 RNA 0.74 TCGA-ZF-AA4V-01 14 24533476 24533476 C A LRRC16B Missense_Mutation p.Q1001K 0.47 deleterious(0.04) benign(0.045) TCGA-ZF-AA4V-01 14 29237361 29237361 C T FOXG1 Silent p.L292L 0.52 TCGA-ZF-AA4V-01 14 63671662 63671662 G A RHOJ Silent p.V25V 0.57 TCGA-ZF-AA4V-01 14 68117488 68117488 G A ARG2 Missense_Mutation p.E306K 0.74 tolerated(0.06) benign(0.006) TCGA-ZF-AA4V-01 14 76668107 76668107 G A GPATCH2L Silent p.V454V 0.57 TCGA-ZF-AA4V-01 14 88899525 88899525 G A SPATA7 Missense_Mutation p.E377K 0.67 deleterious(0) probably_damaging(0.92) TCGA-ZF-AA4V-01 14 91113338 91113338 T C TTC7B Missense_Mutation p.Q516R 0.62 tolerated(0.29) benign(0.021) TCGA-ZF-AA4V-01 14 91780000 91780000 G A CCDC88C Silent p.S720S 0.24 TCGA-ZF-AA4V-01 14 94563266 94563266 G A IFI27L1 5'UTR 0.69 TCGA-ZF-AA4V-01 14 96770887 96770887 A G ATG2B Missense_Mutation p.V1596A 0.72 tolerated(0.73) benign(0.001) TCGA-ZF-AA4V-01 14 96797941 96797941 G A ATG2B Missense_Mutation p.S501L 0.59 tolerated(1) probably_damaging(0.942) TCGA-ZF-AA4V-01 14 99724032 99724032 C T BCL11B Missense_Mutation p.G68E 0.66 deleterious(0) benign(0.003) TCGA-ZF-AA4V-01 15 100332113 100332113 C T AC090825.1 5'Flank 0.35 TCGA-ZF-AA4V-01 15 34140554 34140554 A G RYR3 Silent p.L4520L 0.46 TCGA-ZF-AA4V-01 15 40683705 40683705 G A KNSTRN Missense_Mutation p.E233K 0.23 tolerated(0.2) possibly_damaging(0.638) TCGA-ZF-AA4V-01 15 41862508 41862508 C G TYRO3 Missense_Mutation p.R485G 0.46 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 15 43815555 43815555 G A MAP1A Silent p.Q628Q 0.40 TCGA-ZF-AA4V-01 15 52258315 52258315 C A LEO1 Missense_Mutation p.D149Y 0.25 tolerated_low_confidence(0.12) benign(0.002) TCGA-ZF-AA4V-01 15 52485995 52485995 C T MYO5C 3'UTR 0.47 TCGA-ZF-AA4V-01 15 52844256 52844256 T G ARPP19 Missense_Mutation p.M72L 0.36 tolerated(0.39) benign(0.068) TCGA-ZF-AA4V-01 15 67529060 67529060 T C AAGAB Missense_Mutation p.I58V 0.31 tolerated(0.53) benign(0.009) TCGA-ZF-AA4V-01 15 67629410 67629410 T C IQCH Missense_Mutation p.V162A 0.25 deleterious(0.01) possibly_damaging(0.783) TCGA-ZF-AA4V-01 15 68118509 68118509 G A SKOR1 Missense_Mutation p.E301K 0.24 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-ZF-AA4V-01 15 72455648 72455648 C T GRAMD2 Silent p.L305L 0.38 TCGA-ZF-AA4V-01 15 72494883 72494883 C G PKM Intron 0.33 TCGA-ZF-AA4V-01 15 74426445 74426445 C T ISLR2 Silent p.L450L 0.44 TCGA-ZF-AA4V-01 15 75190015 75190015 C T MPI Silent p.L406L 0.26 TCGA-ZF-AA4V-01 15 81235439 81235439 G C KIAA1199 Missense_Mutation p.D1285H 0.24 tolerated(0.1) possibly_damaging(0.863) TCGA-ZF-AA4V-01 15 85198474 85198474 C A NMB 3'UTR 0.34 TCGA-ZF-AA4V-01 15 91423993 91423993 C G FURIN Silent p.P543P 0.32 TCGA-ZF-AA4V-01 15 93498666 93498676 AATGGATTCAT - CHD2 Frame_Shift_Del p.E578Vfs*16 0.42 TCGA-ZF-AA4V-01 16 1033751 1033751 G A SOX8 Missense_Mutation p.R149Q 0.34 deleterious(0) probably_damaging(0.956) TCGA-ZF-AA4V-01 16 1306684 1306684 G A TPSD1 Missense_Mutation p.E84K 0.27 tolerated(0.75) benign(0.003) TCGA-ZF-AA4V-01 16 14738401 14738401 G C BFAR Missense_Mutation p.K66N 0.29 deleterious(0.02) benign(0.224) TCGA-ZF-AA4V-01 16 15790665 15790665 G C NDE1 Missense_Mutation p.D299H 0.13 deleterious(0.01) possibly_damaging(0.849) TCGA-ZF-AA4V-01 16 16259558 16259558 G A ABCC6 Silent p.V1076V 0.12 TCGA-ZF-AA4V-01 16 19693633 19693633 G C C16orf62 Missense_Mutation p.E905D 0.20 tolerated(0.68) benign(0) TCGA-ZF-AA4V-01 16 20996984 20996984 G T DNAH3 Missense_Mutation p.S2360R 0.37 deleterious(0.02) benign(0.382) TCGA-ZF-AA4V-01 16 21262269 21262269 G C ANKS4B 3'UTR 0.14 TCGA-ZF-AA4V-01 16 2152630 2152630 T C PKD1 Missense_Mutation p.R2985G 0.28 benign(0.001) TCGA-ZF-AA4V-01 16 23085191 23085191 C T USP31 Silent p.K729K 0.34 TCGA-ZF-AA4V-01 16 23453807 23453807 G A COG7 Nonsense_Mutation p.Q199* 0.15 TCGA-ZF-AA4V-01 16 24043464 24043464 G T PRKCB Missense_Mutation p.R99L 0.14 deleterious(0.04) benign(0.076) TCGA-ZF-AA4V-01 16 24372723 24372723 G A CACNG3 Missense_Mutation p.D163N 0.13 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4V-01 16 27245536 27245536 C G NSMCE1 Missense_Mutation p.E103D 0.11 tolerated(0.2) probably_damaging(0.974) TCGA-ZF-AA4V-01 16 27518218 27518218 G A GTF3C1 Missense_Mutation p.S501F 0.19 tolerated(0.06) benign(0.006) TCGA-ZF-AA4V-01 16 28916292 28916292 G C RABEP2 Missense_Mutation p.T561R 0.09 tolerated(0.97) benign(0.001) TCGA-ZF-AA4V-01 16 30017614 30017614 G C DOC2A Missense_Mutation p.R366G 0.35 deleterious(0) benign(0.006) TCGA-ZF-AA4V-01 16 30123629 30123629 C T GDPD3 Missense_Mutation p.E161K 0.26 tolerated(1) benign(0.004) TCGA-ZF-AA4V-01 16 31213926 31213926 G T PYCARD Nonsense_Mutation p.S29* 0.13 TCGA-ZF-AA4V-01 16 31228167 31228167 G C PYDC1 Nonsense_Mutation p.Y61* 0.15 TCGA-ZF-AA4V-01 16 31419225 31419225 T C ITGAD Missense_Mutation p.Y333H 0.26 deleterious(0) benign(0.423) TCGA-ZF-AA4V-01 16 46836948 46836948 G A C16orf87 Silent p.N127N 0.45 TCGA-ZF-AA4V-01 16 47684750 47684750 G A PHKB Missense_Mutation p.R630Q 0.62 tolerated(0.53) benign(0.153) TCGA-ZF-AA4V-01 16 48138202 48138202 G T ABCC12 Missense_Mutation p.D917E 0.53 tolerated(0.21) possibly_damaging(0.883) TCGA-ZF-AA4V-01 16 53337721 53337721 C G CHD9 Missense_Mutation p.R1935G 0.62 probably_damaging(0.999) TCGA-ZF-AA4V-01 16 57060627 57060627 A T NLRC5 Missense_Mutation p.K591M 0.61 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA4V-01 16 57073702 57073702 C T NLRC5 Silent p.H937H 0.61 TCGA-ZF-AA4V-01 16 67322086 67322086 G A PLEKHG4 Silent p.A1079A 0.61 TCGA-ZF-AA4V-01 16 68398693 68398693 C T SMPD3 Missense_Mutation p.V506I 0.66 tolerated(0.13) benign(0.163) TCGA-ZF-AA4V-01 16 69726488 69726488 G A NFAT5 Silent p.Q920Q 0.62 TCGA-ZF-AA4V-01 16 71127744 71127744 G A HYDIN Silent p.F474F 0.35 TCGA-ZF-AA4V-01 16 74387794 74387794 G A RP11-252A24.2 RNA 0.56 TCGA-ZF-AA4V-01 16 75269218 75269218 C G BCAR1 Missense_Mutation p.G573R 0.72 deleterious(0) probably_damaging(0.948) TCGA-ZF-AA4V-01 16 89799778 89799778 C A ZNF276 Missense_Mutation p.P413Q 0.67 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 17 10222154 10222154 C T MYH13 Missense_Mutation p.E1231K 0.25 deleterious(0.01) possibly_damaging(0.596) TCGA-ZF-AA4V-01 17 1183494 1183494 G A TUSC5 Missense_Mutation p.E67K 0.35 tolerated(0.68) possibly_damaging(0.689) TCGA-ZF-AA4V-01 17 19091539 19091539 G A SNORD3A RNA 0.11 TCGA-ZF-AA4V-01 17 2227677 2227677 A T SRR 3'UTR 0.64 TCGA-ZF-AA4V-01 17 25639561 25639561 A G WSB1 3'UTR 0.45 TCGA-ZF-AA4V-01 17 25949051 25949051 G A KSR1 3'UTR 0.55 TCGA-ZF-AA4V-01 17 26911177 26911177 C G RP11-192H23.4 Missense_Mutation p.E206D 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-AA4V-01 17 26951373 26951373 C T KIAA0100 Missense_Mutation p.D1544N 0.29 tolerated(0.24) possibly_damaging(0.712) TCGA-ZF-AA4V-01 17 27001402 27001402 G A SUPT6H Missense_Mutation p.E71K 0.19 tolerated(0.07) unknown(0) TCGA-ZF-AA4V-01 17 27001432 27001432 G A SUPT6H Missense_Mutation p.D81N 0.19 tolerated(0.46) unknown(0) TCGA-ZF-AA4V-01 17 27001630 27001630 G C SUPT6H Missense_Mutation p.G115A 0.23 tolerated(0.11) unknown(0) TCGA-ZF-AA4V-01 17 29162810 29162810 G A ATAD5 Missense_Mutation p.D571N 0.16 tolerated(0.06) benign(0.015) TCGA-ZF-AA4V-01 17 30796165 30796165 C T PSMD11 Silent p.A199A 0.18 TCGA-ZF-AA4V-01 17 3181779 3181779 T G OR3A2 Silent p.R151R 0.18 TCGA-ZF-AA4V-01 17 32963157 32963157 G C TMEM132E Silent p.G613G 0.14 TCGA-ZF-AA4V-01 17 33586519 33586519 G C SLFN5 Missense_Mutation p.Q270H 0.21 tolerated(0.05) benign(0.059) TCGA-ZF-AA4V-01 17 34171988 34171988 G A TAF15 Missense_Mutation p.R562Q 0.30 deleterious_low_confidence(0) unknown(0) TCGA-ZF-AA4V-01 17 34848654 34848654 C T ZNHIT3 Intron 0.23 TCGA-ZF-AA4V-01 17 3563880 3563880 C T CTNS Intron 0.32 TCGA-ZF-AA4V-01 17 35988702 35988702 T C DDX52 Silent p.L254L 0.47 TCGA-ZF-AA4V-01 17 36099443 36099443 C T HNF1B Missense_Mutation p.E178K 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-ZF-AA4V-01 17 37646961 37646961 C T CDK12 Nonsense_Mutation p.Q695* 0.27 TCGA-ZF-AA4V-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.18 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 17 38121974 38121974 G A GSDMA Missense_Mutation p.A12T 0.13 tolerated(0.17) benign(0.02) TCGA-ZF-AA4V-01 17 38975803 38975803 G A KRT10 Nonsense_Mutation p.Q447* 0.23 TCGA-ZF-AA4V-01 17 40831541 40831541 C T CCR10 3'UTR 0.28 TCGA-ZF-AA4V-01 17 48777205 48777205 C A ANKRD40 Silent p.L111L 0.44 TCGA-ZF-AA4V-01 17 55729481 55729481 G A MSI2 Missense_Mutation p.G250E 0.40 deleterious(0.01) benign(0.157) TCGA-ZF-AA4V-01 17 56327796 56327796 G T LPO Missense_Mutation p.K198N 0.40 tolerated(0.27) possibly_damaging(0.45) TCGA-ZF-AA4V-01 17 56598376 56598376 C T SEPT4 Silent p.V435V 0.40 TCGA-ZF-AA4V-01 17 57033080 57033080 T C PPM1E Missense_Mutation p.S179P 0.30 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4V-01 17 57812812 57812812 A G VMP1 Missense_Mutation p.I64V 0.17 tolerated(0.29) benign(0) TCGA-ZF-AA4V-01 17 57918683 57918683 G C VMP1 3'Flank 0.48 TCGA-ZF-AA4V-01 17 59989420 59989420 G T INTS2 Missense_Mutation p.L229M 0.43 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 17 62746753 62746753 G A hsa-mir-6080 RNA 0.25 TCGA-ZF-AA4V-01 17 6338333 6338333 G A AIPL1 Missense_Mutation p.S31F 0.33 deleterious(0) probably_damaging(0.936) TCGA-ZF-AA4V-01 17 64873438 64873438 A T CACNG5 5'UTR 0.51 TCGA-ZF-AA4V-01 17 6943390 6943390 C T SLC16A13 3'UTR 0.19 TCGA-ZF-AA4V-01 17 72956328 72956328 G A HID1 Silent p.L248L 0.32 TCGA-ZF-AA4V-01 17 73839263 73839263 C T UNC13D Missense_Mutation p.E80K 0.29 tolerated(0.09) benign(0.41) TCGA-ZF-AA4V-01 17 74750140 74750140 A G MFSD11 Missense_Mutation p.N218S 0.36 tolerated(1) benign(0) TCGA-ZF-AA4V-01 17 75085547 75085547 G A SEC14L1 Intron 0.15 TCGA-ZF-AA4V-01 17 7812129 7812129 C T CHD3 Silent p.F1851F 0.24 TCGA-ZF-AA4V-01 17 78282946 78282946 G A RNF213 Missense_Mutation p.R877K 0.27 benign(0.006) TCGA-ZF-AA4V-01 17 78293361 78293361 G T RNF213 Intron 0.33 TCGA-ZF-AA4V-01 17 78321919 78321919 G A RNF213 Missense_Mutation p.A3262T 0.23 probably_damaging(0.911) TCGA-ZF-AA4V-01 17 79092237 79092237 C T AATK Missense_Mutation p.E1364K 0.20 tolerated_low_confidence(0.46) benign(0) TCGA-ZF-AA4V-01 17 79219341 79219341 C T SLC38A10 3'UTR 0.24 TCGA-ZF-AA4V-01 17 79813377 79813377 T C P4HB Silent p.A146A 0.47 TCGA-ZF-AA4V-01 17 80402441 80402441 C T C17orf62 Missense_Mutation p.D109N 0.59 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-AA4V-01 17 80676928 80676928 G C FN3KRP Silent p.L96L 0.44 TCGA-ZF-AA4V-01 18 22040777 22040777 A G HRH4 Missense_Mutation p.I29V 0.62 tolerated(0.58) benign(0.086) TCGA-ZF-AA4V-01 18 32398078 32398078 T C DTNA Intron 0.28 TCGA-ZF-AA4V-01 18 32954038 32954038 G C ZNF396 Silent p.L73L 0.32 TCGA-ZF-AA4V-01 18 33552793 33552793 G A C18orf21 Intron 0.27 TCGA-ZF-AA4V-01 18 33691099 33691099 G A SLC39A6 Missense_Mutation p.H680Y 0.33 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 18 3447713 3447713 C T TGIF1 5'Flank 0.32 TCGA-ZF-AA4V-01 18 56377292 56377292 G C MALT1 Missense_Mutation p.E305Q 0.27 tolerated(0.13) benign(0.021) TCGA-ZF-AA4V-01 18 59166463 59166463 C A CDH20 Silent p.I97I 0.20 TCGA-ZF-AA4V-01 18 72187407 72187407 C A CNDP2 3'UTR 0.17 TCGA-ZF-AA4V-01 18 72346257 72346257 C T ZNF407 Silent p.I1094I 0.32 TCGA-ZF-AA4V-01 18 756621 756621 C A YES1 Silent p.T69T 0.32 TCGA-ZF-AA4V-01 18 9255422 9255422 A G ANKRD12 Silent p.T719T 0.33 TCGA-ZF-AA4V-01 19 11527324 11527324 G T RGL3 Missense_Mutation p.T130K 0.21 tolerated(0.28) benign(0.372) TCGA-ZF-AA4V-01 19 11531535 11531535 G C CCDC151 Missense_Mutation p.H586D 0.23 deleterious(0.01) unknown(0) TCGA-ZF-AA4V-01 19 12738585 12738585 C T ZNF791 Missense_Mutation p.A81V 0.17 tolerated(0.06) benign(0.053) TCGA-ZF-AA4V-01 19 13050907 13050907 C T CALR Silent p.V146V 0.30 TCGA-ZF-AA4V-01 19 14710593 14710593 C T CLEC17A Silent p.N237N 0.53 TCGA-ZF-AA4V-01 19 15507984 15507984 T C AKAP8L Missense_Mutation p.M505V 0.17 tolerated(1) benign(0.002) TCGA-ZF-AA4V-01 19 16222778 16222778 T C RAB8A Missense_Mutation p.C23R 0.21 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 19 16612042 16612042 A C C19orf44 Missense_Mutation p.T147P 0.21 tolerated(0.29) benign(0.033) TCGA-ZF-AA4V-01 19 17435910 17435910 G C ANO8 Missense_Mutation p.P983A 0.20 deleterious_low_confidence(0) unknown(0) TCGA-ZF-AA4V-01 19 17452408 17452408 G C GTPBP3 Missense_Mutation p.E491Q 0.26 tolerated(0.2) probably_damaging(1) TCGA-ZF-AA4V-01 19 17535761 17535761 G C MVB12A Missense_Mutation p.E261Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4V-01 19 17752296 17752296 C T UNC13A Missense_Mutation p.D848N 0.22 deleterious(0) probably_damaging(0.973) TCGA-ZF-AA4V-01 19 17918757 17918757 G A B3GNT3 Silent p.L47L 0.20 TCGA-ZF-AA4V-01 19 18092644 18092644 T C KCNN1 Missense_Mutation p.W209R 0.26 deleterious(0) probably_damaging(0.914) TCGA-ZF-AA4V-01 19 1828172 1828172 C T REXO1 Missense_Mutation p.V206M 0.36 deleterious(0.04) benign(0.098) TCGA-ZF-AA4V-01 19 18329157 18329157 G A PDE4C Missense_Mutation p.T406M 0.47 tolerated(0.07) benign(0.364) TCGA-ZF-AA4V-01 19 18864341 18864341 G C CRTC1 Missense_Mutation p.E206D 0.23 tolerated(0.13) benign(0.004) TCGA-ZF-AA4V-01 19 19448017 19448017 G A MAU2 Silent p.A133A 0.29 TCGA-ZF-AA4V-01 19 19655508 19655508 C T CILP2 Silent p.N718N 0.14 TCGA-ZF-AA4V-01 19 2249452 2249452 G A AMH Missense_Mutation p.E41K 0.23 tolerated_low_confidence(0.12) benign(0.008) TCGA-ZF-AA4V-01 19 30935694 30935694 C T ZNF536 Missense_Mutation p.P409S 0.47 tolerated(0.92) benign(0.005) TCGA-ZF-AA4V-01 19 3121021 3121021 C T GNA11 Silent p.F308F 0.33 TCGA-ZF-AA4V-01 19 36220083 36220083 C T KMT2B Silent p.I1601I 0.26 TCGA-ZF-AA4V-01 19 38231070 38231070 G A ZNF573 Silent p.I107I 0.21 TCGA-ZF-AA4V-01 19 40520001 40520002 - T ZNF546 Frame_Shift_Ins p.K276* 0.20 TCGA-ZF-AA4V-01 19 41063186 41063186 G C SPTBN4 Missense_Mutation p.Q1849H 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-ZF-AA4V-01 19 4117548 4117548 G C MAP2K2 Missense_Mutation p.L58V 0.38 deleterious(0.04) possibly_damaging(0.607) TCGA-ZF-AA4V-01 19 4171907 4171907 C G CREB3L3 Missense_Mutation p.P443A 0.35 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-ZF-AA4V-01 19 42373788 42373788 C T RPS19 Nonsense_Mutation p.Q126* 0.15 TCGA-ZF-AA4V-01 19 42600013 42600013 G A POU2F2 Silent p.F244F 0.23 TCGA-ZF-AA4V-01 19 42865107 42865107 G A MEGF8 Missense_Mutation p.G1823E 0.50 tolerated(0.11) benign(0.002) TCGA-ZF-AA4V-01 19 43979529 43979529 C T PHLDB3 3'UTR 0.37 TCGA-ZF-AA4V-01 19 45872219 45872219 T C ERCC2 Missense_Mutation p.Y72C 0.19 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 19 46388283 46388283 G A IRF2BP1 Silent p.H250H 0.22 TCGA-ZF-AA4V-01 19 46893381 46893381 A T PPP5C Missense_Mutation p.T477S 0.47 tolerated(0.6) benign(0.003) TCGA-ZF-AA4V-01 19 4700228 4700228 C T DPP9 Silent p.K358K 0.36 TCGA-ZF-AA4V-01 19 47259873 47259873 A G FKRP Missense_Mutation p.E389G 0.28 tolerated(0.14) benign(0.253) TCGA-ZF-AA4V-01 19 47883052 47883052 C G DHX34 Missense_Mutation p.A931G 0.20 tolerated(0.06) benign(0.001) TCGA-ZF-AA4V-01 19 47910681 47910681 G C MEIS3 Missense_Mutation p.P334R 0.50 deleterious(0) probably_damaging(0.943) TCGA-ZF-AA4V-01 19 47969402 47969402 A T SLC8A2 Missense_Mutation p.S87T 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 19 48908251 48908251 G A GRIN2D Silent p.Q242Q 0.19 TCGA-ZF-AA4V-01 19 49132182 49132182 C T SPHK2 Missense_Mutation p.R373C 0.17 deleterious(0) benign(0.008) TCGA-ZF-AA4V-01 19 49245113 49245113 G A IZUMO1 Silent p.G229G 0.27 TCGA-ZF-AA4V-01 19 49842774 49842774 G A CD37 Intron 0.57 TCGA-ZF-AA4V-01 19 50367631 50367631 G A PNKP Silent p.L176L 0.31 TCGA-ZF-AA4V-01 19 52115563 52115563 G C SIGLEC5 Missense_Mutation p.S526C 0.57 deleterious(0.05) possibly_damaging(0.627) TCGA-ZF-AA4V-01 19 5245929 5245929 G A PTPRS Silent p.A282A 0.26 TCGA-ZF-AA4V-01 19 52660686 52660686 C G ZNF836 Missense_Mutation p.E84Q 0.32 tolerated(0.27) probably_damaging(0.932) TCGA-ZF-AA4V-01 19 53454143 53454143 A G ZNF816 Silent p.T295T 0.42 TCGA-ZF-AA4V-01 19 53856537 53856537 G C ZNF845 Missense_Mutation p.R870T 0.25 tolerated(0.38) benign(0.298) TCGA-ZF-AA4V-01 19 54677870 54677870 G A MBOAT7 Silent p.I429I 0.42 TCGA-ZF-AA4V-01 19 55143203 55143203 C T LILRB1 Missense_Mutation p.S108L 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-ZF-AA4V-01 19 56466417 56466417 G A NLRP8 Silent p.L331L 0.38 TCGA-ZF-AA4V-01 19 57029922 57029922 G A ZNF471 Missense_Mutation p.E78K 0.30 tolerated(0.47) benign(0.001) TCGA-ZF-AA4V-01 19 58084192 58084192 T C ZNF416 Silent p.G360G 0.40 TCGA-ZF-AA4V-01 19 7570984 7570984 G T C19orf45 Missense_Mutation p.E380D 0.46 tolerated(0.63) benign(0.004) TCGA-ZF-AA4V-01 19 757862 757862 G A MISP Missense_Mutation p.D306N 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-ZF-AA4V-01 19 7806919 7806919 G C CD209 3'UTR 0.26 TCGA-ZF-AA4V-01 19 829604 829604 G A AZU1 Silent p.L86L 0.25 TCGA-ZF-AA4V-01 19 9049770 9049770 C A MUC16 Nonsense_Mutation p.E10621* 0.14 TCGA-ZF-AA4V-01 19 9088890 9088890 C A MUC16 Missense_Mutation p.K975N 0.45 unknown(0) TCGA-ZF-AA4V-01 19 9968519 9968519 A G OLFM2 Missense_Mutation p.S78P 0.29 deleterious(0) probably_damaging(0.953) TCGA-ZF-AA4V-01 1 100736190 100736190 G T RTCA Missense_Mutation p.G136V 0.35 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 1 10335507 10335507 G C KIF1B Missense_Mutation p.D296H 0.31 deleterious(0) possibly_damaging(0.813) TCGA-ZF-AA4V-01 1 10699977 10699977 G A CASZ1 Silent p.F1434F 0.17 TCGA-ZF-AA4V-01 1 110948964 110948964 C T LAMTOR5 Missense_Mutation p.D107N 0.32 tolerated(0.08) possibly_damaging(0.785) TCGA-ZF-AA4V-01 1 11333720 11333720 G A UBIAD1 Silent p.Q44Q 0.17 TCGA-ZF-AA4V-01 1 11561920 11561920 A G PTCHD2 Missense_Mutation p.T291A 0.33 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA4V-01 1 11589878 11589878 C T PTCHD2 Silent p.F988F 0.30 TCGA-ZF-AA4V-01 1 120436675 120436675 G T ADAM30 Missense_Mutation p.S762Y 0.26 deleterious_low_confidence(0.04) benign(0.078) TCGA-ZF-AA4V-01 1 120466574 120466574 G A NOTCH2 Silent p.D1515D 0.33 TCGA-ZF-AA4V-01 1 144892563 144892563 C G PDE4DIP Missense_Mutation p.D948H 0.50 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 1 144917854 144917854 G A PDE4DIP Missense_Mutation p.R478C 0.07 deleterious(0) probably_damaging(0.954) TCGA-ZF-AA4V-01 1 145415418 145415418 C T HFE2 Silent p.L79L 0.04 TCGA-ZF-AA4V-01 1 150300860 150300860 G T PRPF3 Nonsense_Mutation p.E120* 0.08 TCGA-ZF-AA4V-01 1 150689644 150689644 C T HORMAD1 Missense_Mutation p.E50K 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA4V-01 1 150974766 150974766 C T FAM63A Missense_Mutation p.E158K 0.10 tolerated(0.15) possibly_damaging(0.641) TCGA-ZF-AA4V-01 1 151040050 151040050 A T MLLT11 3'UTR 0.07 TCGA-ZF-AA4V-01 1 151138631 151138631 G A SCNM1 Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.981) TCGA-ZF-AA4V-01 1 151239669 151239669 G C PSMD4 Silent p.V328V 0.10 TCGA-ZF-AA4V-01 1 151288629 151288629 G C PI4KB Nonsense_Mutation p.S122* 0.13 TCGA-ZF-AA4V-01 1 152058966 152058966 C T TCHHL1 Missense_Mutation p.E398K 0.07 tolerated(0.08) benign(0.059) TCGA-ZF-AA4V-01 1 152059670 152059670 G T TCHHL1 Missense_Mutation p.A163D 0.03 tolerated(0.16) benign(0.07) TCGA-ZF-AA4V-01 1 152328064 152328064 C T FLG2 Missense_Mutation p.G733D 0.04 unknown(0) TCGA-ZF-AA4V-01 1 154184941 154184941 C T C1orf43 Missense_Mutation p.G167E 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-AA4V-01 1 154233401 154233401 C T UBAP2L Missense_Mutation p.S871F 0.16 deleterious(0) probably_damaging(0.982) TCGA-ZF-AA4V-01 1 154931355 154931355 G A PYGO2 Missense_Mutation p.S374F 0.23 deleterious(0) probably_damaging(0.951) TCGA-ZF-AA4V-01 1 155292282 155292282 G A RUSC1 Missense_Mutation p.E240K 0.10 deleterious_low_confidence(0.01) benign(0.075) TCGA-ZF-AA4V-01 1 155823384 155823384 G A GON4L Missense_Mutation p.S63F 0.26 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-ZF-AA4V-01 1 156025060 156025060 G A LAMTOR2 Silent p.L25L 0.16 TCGA-ZF-AA4V-01 1 156144962 156144962 T C SEMA4A Missense_Mutation p.V507A 0.45 deleterious(0) possibly_damaging(0.512) TCGA-ZF-AA4V-01 1 156255264 156255264 C T TMEM79 Nonsense_Mutation p.Q83* 0.23 TCGA-ZF-AA4V-01 1 156351923 156351923 C T RHBG Missense_Mutation p.P348L 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 1 157660181 157660181 C T FCRL3 Silent p.G518G 0.18 TCGA-ZF-AA4V-01 1 158648216 158648216 C T SPTA1 Missense_Mutation p.A263T 0.16 deleterious(0.02) possibly_damaging(0.78) TCGA-ZF-AA4V-01 1 159175254 159175254 G C DARC Missense_Mutation p.E11Q 0.06 tolerated_low_confidence(0.59) benign(0.359) TCGA-ZF-AA4V-01 1 159284182 159284182 G A OR10J3 Missense_Mutation p.H90Y 0.04 tolerated(0.31) benign(0.001) TCGA-ZF-AA4V-01 1 159505745 159505745 G A OR10J5 Missense_Mutation p.S18F 0.05 deleterious(0.01) benign(0.071) TCGA-ZF-AA4V-01 1 159921388 159921388 G A SLAMF9 3'UTR 0.04 TCGA-ZF-AA4V-01 1 160168476 160168476 A G CASQ1 Missense_Mutation p.M280V 0.87 tolerated(0.46) benign(0.002) TCGA-ZF-AA4V-01 1 160654693 160654693 G C CD48 Missense_Mutation p.I123M 0.04 deleterious(0) probably_damaging(0.973) TCGA-ZF-AA4V-01 1 160789143 160789143 G A LY9 Missense_Mutation p.E493K 0.05 tolerated(0.1) benign(0.056) TCGA-ZF-AA4V-01 1 160851891 160851891 C T ITLN1 Silent p.E87E 0.05 TCGA-ZF-AA4V-01 1 161017554 161017554 G T ARHGAP30 Nonsense_Mutation p.S1086* 0.04 TCGA-ZF-AA4V-01 1 161203049 161203049 C T NR1I3 Silent p.L106L 0.04 TCGA-ZF-AA4V-01 1 161599786 161599786 C G FCGR3B Missense_Mutation p.W70S 0.02 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 1 161641318 161641318 C T FCGR2B Silent p.L90L 0.02 TCGA-ZF-AA4V-01 1 161721656 161721656 G A DUSP12 Silent p.K153K 0.17 TCGA-ZF-AA4V-01 1 162345158 162345158 T C C1orf111 Missense_Mutation p.S47G 0.30 tolerated(0.07) benign(0.009) TCGA-ZF-AA4V-01 1 169993564 169993564 C T KIFAP3 Missense_Mutation p.D339N 0.24 tolerated(0.09) probably_damaging(0.957) TCGA-ZF-AA4V-01 1 170699465 170699465 G A PRRX1 Intron 0.20 TCGA-ZF-AA4V-01 1 176992702 176992702 G T ASTN1 Missense_Mutation p.R426S 0.20 tolerated(0.77) probably_damaging(0.996) TCGA-ZF-AA4V-01 1 178420827 178420827 C T RASAL2 Silent p.F583F 0.20 TCGA-ZF-AA4V-01 1 179077197 179077197 G C ABL2 Missense_Mutation p.L1069V 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 1 180904388 180904388 C T KIAA1614 Missense_Mutation p.S448L 0.40 deleterious(0) probably_damaging(0.975) TCGA-ZF-AA4V-01 1 180904393 180904393 G T KIAA1614 Missense_Mutation p.V450L 0.36 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 1 180907837 180907837 G A KIAA1614 Missense_Mutation p.V970M 0.32 tolerated(0.37) benign(0.082) TCGA-ZF-AA4V-01 1 182822539 182822539 C G DHX9 Missense_Mutation p.Q155E 0.15 tolerated(0.33) benign(0.003) TCGA-ZF-AA4V-01 1 183604790 183604790 G A ARPC5 Missense_Mutation p.S2L 0.15 deleterious(0) benign(0.199) TCGA-ZF-AA4V-01 1 183617405 183617405 C T APOBEC4 Missense_Mutation p.R171H 0.20 deleterious(0.04) probably_damaging(0.964) TCGA-ZF-AA4V-01 1 185159688 185159688 G C SWT1 Missense_Mutation p.L479F 0.19 tolerated(0.1) benign(0.269) TCGA-ZF-AA4V-01 1 186056580 186056580 C A HMCN1 Missense_Mutation p.P3056T 0.23 probably_damaging(0.996) TCGA-ZF-AA4V-01 1 19062210 19062210 G A PAX7 Missense_Mutation p.D414N 0.26 deleterious_low_confidence(0) benign(0.141) TCGA-ZF-AA4V-01 1 198697495 198697495 C T PTPRC Silent p.L583L 0.10 TCGA-ZF-AA4V-01 1 200574446 200574446 G A KIF14 Missense_Mutation p.H571Y 0.10 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 1 200574454 200574454 G T KIF14 Missense_Mutation p.S568Y 0.12 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA4V-01 1 201035354 201035354 C T CACNA1S Intron 0.18 TCGA-ZF-AA4V-01 1 201843488 201843488 G C IPO9 Missense_Mutation p.E941Q 0.24 tolerated(0.14) benign(0.092) TCGA-ZF-AA4V-01 1 201844282 201844282 G A IPO9 Missense_Mutation p.E981K 0.22 tolerated(0.42) benign(0.021) TCGA-ZF-AA4V-01 1 204413285 204413285 C T PIK3C2B Silent p.L926L 0.16 TCGA-ZF-AA4V-01 1 206145485 206145485 C A FAM72A Missense_Mutation p.P88T 0.41 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 1 212236235 212236235 G T DTL Missense_Mutation p.C157F 0.16 deleterious(0.02) possibly_damaging(0.722) TCGA-ZF-AA4V-01 1 212965207 212965207 G A TATDN3 5'UTR 0.52 TCGA-ZF-AA4V-01 1 215802251 215802251 G A USH2A Missense_Mutation p.H5142Y 0.43 benign(0.064) TCGA-ZF-AA4V-01 1 215807871 215807871 C G USH2A Missense_Mutation p.R5076T 0.18 probably_damaging(0.992) TCGA-ZF-AA4V-01 1 215848634 215848634 C - USH2A Frame_Shift_Del p.A4207Pfs*50 0.14 TCGA-ZF-AA4V-01 1 220964944 220964944 C T MARC1 Silent p.A129A 0.13 TCGA-ZF-AA4V-01 1 222832114 222832114 C T MIA3 Missense_Mutation p.S1553L 0.41 deleterious(0) possibly_damaging(0.521) TCGA-ZF-AA4V-01 1 223976731 223976731 G A TP53BP2 Nonsense_Mutation p.Q1048* 0.42 TCGA-ZF-AA4V-01 1 226923413 226923413 C T ITPKB Missense_Mutation p.E583K 0.50 deleterious(0.01) possibly_damaging(0.687) TCGA-ZF-AA4V-01 1 228412242 228412242 C T OBSCN Silent p.C1004C 0.23 TCGA-ZF-AA4V-01 1 228465508 228465512 ATCCA - OBSCN Frame_Shift_Del p.Q2700Cfs*68 0.32 TCGA-ZF-AA4V-01 1 231079566 231079566 C G TTC13 Missense_Mutation p.E220Q 0.17 tolerated(0.14) probably_damaging(0.915) TCGA-ZF-AA4V-01 1 231359859 231359859 G C C1orf131 3'UTR 0.29 TCGA-ZF-AA4V-01 1 23208857 23208857 T C EPHB2 Missense_Mutation p.S437P 0.45 tolerated(0.13) benign(0.059) TCGA-ZF-AA4V-01 1 232941206 232941206 C T MAP10 Missense_Mutation p.S146L 0.35 tolerated(0.23) benign(0.009) TCGA-ZF-AA4V-01 1 232943184 232943184 A T MAP10 Missense_Mutation p.E805D 0.56 tolerated(0.14) benign(0.021) TCGA-ZF-AA4V-01 1 237617837 237617837 G A RYR2 Missense_Mutation p.R480Q 0.12 possibly_damaging(0.514) TCGA-ZF-AA4V-01 1 247902657 247902657 T C OR14K1 Silent p.T247T 0.28 TCGA-ZF-AA4V-01 1 248636950 248636950 C T OR2T3 Missense_Mutation p.S100L 0.11 tolerated(0.6) benign(0) TCGA-ZF-AA4V-01 1 25880456 25880456 G A LDLRAP1 Silent p.E44E 0.27 TCGA-ZF-AA4V-01 1 26158516 26158516 G A MTFR1L Silent p.%3D 0.37 TCGA-ZF-AA4V-01 1 27189633 27189633 G A SFN 5'UTR 0.45 TCGA-ZF-AA4V-01 1 28116095 28116095 G A STX12 Missense_Mutation p.M47I 0.32 tolerated(0.06) benign(0.006) TCGA-ZF-AA4V-01 1 28807075 28807075 G T PHACTR4 Missense_Mutation p.E583D 0.25 deleterious(0.02) possibly_damaging(0.689) TCGA-ZF-AA4V-01 1 31189102 31189102 C A MATN1 Missense_Mutation p.R287S 0.24 deleterious(0.01) benign(0.297) TCGA-ZF-AA4V-01 1 31478736 31478736 T C PUM1 Silent p.S228S 0.24 TCGA-ZF-AA4V-01 1 32650157 32650157 G C TXLNA Missense_Mutation p.L179F 0.29 deleterious(0) probably_damaging(0.925) TCGA-ZF-AA4V-01 1 32828358 32828358 G C TSSK3 Missense_Mutation p.G19A 0.24 deleterious(0.01) possibly_damaging(0.622) TCGA-ZF-AA4V-01 1 33480153 33480153 G A AK2 Silent p.F156F 0.26 TCGA-ZF-AA4V-01 1 34254244 34254253 AGTCTGGAAG - CSMD2 Frame_Shift_Del p.F498Mfs*198 0.21 TCGA-ZF-AA4V-01 1 34554657 34554657 G A CSMD2 Nonsense_Mutation p.Q69* 0.37 TCGA-ZF-AA4V-01 1 35331745 35331745 G A DLGAP3 Missense_Mutation p.S960L 0.43 deleterious(0) possibly_damaging(0.558) TCGA-ZF-AA4V-01 1 3555346 3555346 G C WRAP73 Missense_Mutation p.S127C 0.23 tolerated(0.11) benign(0.106) TCGA-ZF-AA4V-01 1 35906507 35906507 C T KIAA0319L Intron 0.33 TCGA-ZF-AA4V-01 1 44083216 44083216 G C PTPRF Missense_Mutation p.R1391P 0.32 deleterious(0.01) possibly_damaging(0.631) TCGA-ZF-AA4V-01 1 47264752 47264752 C A CYP4B1 5'UTR 0.28 TCGA-ZF-AA4V-01 1 47746268 47746268 T C STIL Missense_Mutation p.Q621R 0.32 deleterious(0.02) benign(0.299) TCGA-ZF-AA4V-01 1 53925110 53925110 G A DMRTB1 5'UTR 0.35 TCGA-ZF-AA4V-01 1 54708955 54708955 C T SSBP3 Missense_Mutation p.M223I 0.27 tolerated(0.1) benign(0.018) TCGA-ZF-AA4V-01 1 67795343 67795343 G A IL12RB2 Nonsense_Mutation p.W246* 0.34 TCGA-ZF-AA4V-01 1 7826544 7826544 G T CAMTA1 Missense_Mutation p.G1672V 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZF-AA4V-01 1 82434932 82434932 G C LPHN2 Missense_Mutation p.C848S 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 1 91818146 91818146 T C HFM1 Missense_Mutation p.T632A 0.45 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 1 92554305 92554305 C T BTBD8 Missense_Mutation p.T67I 0.14 tolerated(0.07) possibly_damaging(0.784) TCGA-ZF-AA4V-01 20 10621842 10621842 C G JAG1 Missense_Mutation p.L989F 0.42 tolerated(0.1) possibly_damaging(0.572) TCGA-ZF-AA4V-01 20 17950511 17950511 G A MGME1 Missense_Mutation p.M3I 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-ZF-AA4V-01 20 17950725 17950725 G A MGME1 Missense_Mutation p.D75N 0.18 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA4V-01 20 17950748 17950748 G C MGME1 Silent p.V82V 0.19 TCGA-ZF-AA4V-01 20 18005586 18005586 G A OVOL2 Silent p.P174P 0.22 TCGA-ZF-AA4V-01 20 1902159 1902159 C T SIRPA Silent p.F185F 0.34 TCGA-ZF-AA4V-01 20 23016710 23016710 C A SSTR4 Missense_Mutation p.A197D 0.60 tolerated(0.06) benign(0.042) TCGA-ZF-AA4V-01 20 2776955 2776955 C T CPXM1 Missense_Mutation p.E394K 0.31 deleterious(0.02) probably_damaging(0.933) TCGA-ZF-AA4V-01 20 2777023 2777023 A G CPXM1 Missense_Mutation p.L371P 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 20 2945684 2945684 C G PTPRA Missense_Mutation p.S84C 0.21 deleterious_low_confidence(0.03) benign(0.188) TCGA-ZF-AA4V-01 20 32210943 32210943 G A CBFA2T2 Missense_Mutation p.R187Q 0.39 deleterious(0) probably_damaging(0.955) TCGA-ZF-AA4V-01 20 33509250 33509250 C T ACSS2 Silent p.F478F 0.39 TCGA-ZF-AA4V-01 20 33533815 33533815 G A GSS Silent p.F72F 0.25 TCGA-ZF-AA4V-01 20 33735053 33735053 G A EDEM2 Silent p.F3F 0.17 TCGA-ZF-AA4V-01 20 36793626 36793626 C T TGM2 5'UTR 0.24 TCGA-ZF-AA4V-01 20 3835297 3835297 A G MAVS Missense_Mutation p.Y9C 0.37 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4V-01 20 40112112 40112112 C T CHD6 Missense_Mutation p.D769N 0.41 tolerated(0.06) benign(0.034) TCGA-ZF-AA4V-01 20 44639824 44639824 A C MMP9 Missense_Mutation p.H231P 0.32 deleterious(0.01) possibly_damaging(0.757) TCGA-ZF-AA4V-01 20 46294038 46294038 C T SULF2 Splice_Site p.X635_splice 0.28 TCGA-ZF-AA4V-01 20 47839804 47839804 G A DDX27 Splice_Site p.X132_splice 0.42 TCGA-ZF-AA4V-01 20 49626342 49626342 C G KCNG1 Missense_Mutation p.E178D 0.15 deleterious(0.04) benign(0.008) TCGA-ZF-AA4V-01 20 5081551 5081551 C T TMEM230 Silent p.L146L 0.21 TCGA-ZF-AA4V-01 20 57019274 57019274 G - VAPB Frame_Shift_Del p.K240Rfs*28 0.23 TCGA-ZF-AA4V-01 20 5931058 5931058 C T TRMT6 5'UTR 0.16 TCGA-ZF-AA4V-01 20 61288065 61288065 G A SLCO4A1 Missense_Mutation p.G87S 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 20 61296285 61296285 G A SLCO4A1 Splice_Site p.X374_splice 0.33 TCGA-ZF-AA4V-01 20 62339939 62339939 G A ZGPAT Missense_Mutation p.E3K 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 20 6750813 6750813 C T BMP2 Missense_Mutation p.P14S 0.20 tolerated_low_confidence(0.43) benign(0.074) TCGA-ZF-AA4V-01 21 19190540 19190540 G C C21orf91 Missense_Mutation p.F32L 0.17 deleterious(0) possibly_damaging(0.78) TCGA-ZF-AA4V-01 21 34655483 34655483 C T IL10RB Missense_Mutation p.L195F 0.51 deleterious(0.01) probably_damaging(0.939) TCGA-ZF-AA4V-01 21 37410507 37410507 C A SETD4 Missense_Mutation p.D377Y 0.39 deleterious(0.01) possibly_damaging(0.811) TCGA-ZF-AA4V-01 21 38072038 38072038 C A SIM2 5'UTR 0.80 TCGA-ZF-AA4V-01 21 44323351 44323351 T C NDUFV3 Missense_Mutation p.S77P 0.24 tolerated(0.32) benign(0.114) TCGA-ZF-AA4V-01 21 45994183 45994183 C A KRTAP10-4 Missense_Mutation p.S183Y 0.28 tolerated(0.22) unknown(0) TCGA-ZF-AA4V-01 21 47660722 47660722 C T MCM3AP Intron 0.43 TCGA-ZF-AA4V-01 22 19423380 19423380 G A MRPL40 Silent p.E172E 0.37 TCGA-ZF-AA4V-01 22 20103693 20103693 C T TRMT2A Missense_Mutation p.R156Q 0.27 tolerated(0.28) benign(0.004) TCGA-ZF-AA4V-01 22 21188874 21188874 C G PI4KA Missense_Mutation p.E115Q 0.31 deleterious(0.03) possibly_damaging(0.864) TCGA-ZF-AA4V-01 22 22599384 22599384 C G VPREB1 Missense_Mutation p.Q25E 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 22 24466884 24466884 A - CABIN1 Frame_Shift_Del p.Q789Hfs*3 0.24 TCGA-ZF-AA4V-01 22 26168328 26168328 G A MYO18B Missense_Mutation p.E574K 0.35 deleterious(0) probably_damaging(0.954) TCGA-ZF-AA4V-01 22 32506042 32506042 G C SLC5A1 Missense_Mutation p.E613Q 0.20 tolerated(0.37) benign(0.224) TCGA-ZF-AA4V-01 22 37458602 37458602 G A KCTD17 Missense_Mutation p.D288N 0.18 deleterious_low_confidence(0) benign(0.001) TCGA-ZF-AA4V-01 22 39064089 39064089 G A CBY1 Silent p.P10P 0.32 TCGA-ZF-AA4V-01 22 41246881 41246881 C G ST13 Missense_Mutation p.M38I 0.26 tolerated(0.06) benign(0.005) TCGA-ZF-AA4V-01 22 41569739 41569739 C T EP300 Missense_Mutation p.S1577F 0.33 probably_damaging(0.968) TCGA-ZF-AA4V-01 22 41982157 41982157 C T PMM1 Missense_Mutation p.R43Q 0.37 deleterious(0.04) benign(0.045) TCGA-ZF-AA4V-01 22 43606971 43606971 G T SCUBE1 Silent p.T780T 0.29 TCGA-ZF-AA4V-01 22 46656640 46656640 G A PKDREJ Silent p.N860N 0.27 TCGA-ZF-AA4V-01 22 46668301 46668301 G A TTC38 Missense_Mutation p.D61N 0.35 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 22 50615664 50615664 A G PANX2 Missense_Mutation p.K175E 0.17 tolerated(0.2) probably_damaging(0.999) TCGA-ZF-AA4V-01 22 50885656 50885656 C T SBF1 Missense_Mutation p.R1866H 0.37 deleterious(0) possibly_damaging(0.7) TCGA-ZF-AA4V-01 2 101967409 101967409 G A CREG2 Silent p.F283F 0.25 TCGA-ZF-AA4V-01 2 11735506 11735506 G T GREB1 Splice_Site p.X609_splice 0.20 TCGA-ZF-AA4V-01 2 11911713 11911713 G C LPIN1 Missense_Mutation p.K217N 0.13 deleterious(0.02) benign(0.23) TCGA-ZF-AA4V-01 2 119600673 119600673 G A EN1 Silent p.L340L 0.41 TCGA-ZF-AA4V-01 2 128467099 128467099 C T WDR33 Missense_Mutation p.R1177Q 0.27 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-ZF-AA4V-01 2 131103679 131103679 C T IMP4 Missense_Mutation p.S228L 0.27 deleterious(0.01) benign(0.05) TCGA-ZF-AA4V-01 2 135602802 135602802 G A ACMSD Splice_Site p.X20_splice 0.28 TCGA-ZF-AA4V-01 2 135694537 135694537 G C CCNT2 Missense_Mutation p.D123H 0.22 deleterious(0) possibly_damaging(0.574) TCGA-ZF-AA4V-01 2 152109295 152109295 G A RBM43 Missense_Mutation p.L97F 0.18 deleterious(0.01) unknown(0) TCGA-ZF-AA4V-01 2 152235955 152235955 G C TNFAIP6 Missense_Mutation p.D248H 0.25 deleterious(0.01) benign(0.276) TCGA-ZF-AA4V-01 2 152528918 152528918 C T NEB Missense_Mutation p.E1422K 0.28 possibly_damaging(0.621) TCGA-ZF-AA4V-01 2 152579932 152579932 C G NEB Silent p.L227L 0.47 TCGA-ZF-AA4V-01 2 163374268 163374268 G A KCNH7 Silent p.N288N 0.33 TCGA-ZF-AA4V-01 2 168115691 168115691 G C XIRP2 3'UTR 0.33 TCGA-ZF-AA4V-01 2 175939547 175939576 ATCATCTTTATCAGCAGCTGGGTGGAAAAA - ATF2 Splice_Site p.X431_splice 0.32 TCGA-ZF-AA4V-01 2 178080483 178080483 G C HNRNPA3 Missense_Mutation p.M67I 0.16 tolerated(0.12) benign(0.008) TCGA-ZF-AA4V-01 2 178080608 178080608 G C HNRNPA3 Missense_Mutation p.R109T 0.25 tolerated(0.05) benign(0.236) TCGA-ZF-AA4V-01 2 179417077 179417077 C T TTN Missense_Mutation p.E30184K 0.43 TCGA-ZF-AA4V-01 2 179438608 179438608 G C TTN Missense_Mutation p.S24084C 0.49 TCGA-ZF-AA4V-01 2 179480041 179480041 C T TTN Missense_Mutation p.E16211K 0.22 TCGA-ZF-AA4V-01 2 179613743 179613743 C T TTN Intron 0.29 TCGA-ZF-AA4V-01 2 189871168 189871168 G A COL3A1 Missense_Mutation p.R1064K 0.19 probably_damaging(0.948) TCGA-ZF-AA4V-01 2 196865601 196865601 C A DNAH7 Missense_Mutation p.V394F 0.22 tolerated(0.16) benign(0.008) TCGA-ZF-AA4V-01 2 20192787 20192787 A G MATN3 3'UTR 0.38 TCGA-ZF-AA4V-01 2 202899764 202899764 G A FZD7 Missense_Mutation p.E132K 0.24 tolerated(0.06) possibly_damaging(0.903) TCGA-ZF-AA4V-01 2 203242178 203242178 G A BMPR2 5'UTR 0.35 TCGA-ZF-AA4V-01 2 206921045 206921045 C T INO80D Missense_Mutation p.D281N 0.27 tolerated_low_confidence(0.21) possibly_damaging(0.52) TCGA-ZF-AA4V-01 2 207424807 207424807 C T ADAM23 Silent p.R378R 0.21 TCGA-ZF-AA4V-01 2 208489117 208489117 C T METTL21A 5'UTR 0.29 TCGA-ZF-AA4V-01 2 211421493 211421493 G C CPS1 Missense_Mutation p.R18S 0.13 deleterious_low_confidence(0) benign(0.033) TCGA-ZF-AA4V-01 2 21229816 21229816 A G APOB Silent p.H3308H 0.37 TCGA-ZF-AA4V-01 2 225739015 225739015 G A DOCK10 Silent p.L357L 0.38 TCGA-ZF-AA4V-01 2 227661432 227661432 T C IRS1 Missense_Mutation p.I675V 0.49 tolerated(0.37) benign(0) TCGA-ZF-AA4V-01 2 232458278 232458278 G A C2orf57 Missense_Mutation p.E206K 0.09 tolerated(0.1) benign(0.008) TCGA-ZF-AA4V-01 2 234676951 234676951 G A UGT1A10 Missense_Mutation p.M387I 0.38 deleterious(0.02) probably_damaging(0.989) TCGA-ZF-AA4V-01 2 238785966 238785966 C T RAMP1 Silent p.V51V 0.44 TCGA-ZF-AA4V-01 2 27598981 27598981 G A SNX17 Missense_Mutation p.M371I 0.21 tolerated(0.06) benign(0.032) TCGA-ZF-AA4V-01 2 27672403 27672403 T C IFT172 Missense_Mutation p.Y1396C 0.26 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA4V-01 2 27703989 27703989 C T IFT172 Missense_Mutation p.D237N 0.17 deleterious(0.02) possibly_damaging(0.477) TCGA-ZF-AA4V-01 2 28840617 28840617 T C PLB1 Silent p.C1073C 0.22 TCGA-ZF-AA4V-01 2 29293647 29293647 C T C2orf71 Missense_Mutation p.E1161K 0.25 tolerated(0.15) benign(0.019) TCGA-ZF-AA4V-01 2 30381638 30381638 G A YPEL5 Missense_Mutation p.V99M 0.11 deleterious(0) possibly_damaging(0.875) TCGA-ZF-AA4V-01 2 33173947 33173947 A C LTBP1 Missense_Mutation p.N167T 0.20 deleterious(0) probably_damaging(0.971) TCGA-ZF-AA4V-01 2 37368823 37368823 T C EIF2AK2 Missense_Mutation p.T88A 0.27 tolerated(0.64) benign(0) TCGA-ZF-AA4V-01 2 37586827 37586827 C T QPCT Silent p.I124I 0.19 TCGA-ZF-AA4V-01 2 39055503 39055503 A G DHX57 Missense_Mutation p.F873S 0.21 deleterious(0) possibly_damaging(0.77) TCGA-ZF-AA4V-01 2 39240676 39240676 C T SOS1 Missense_Mutation p.E698K 0.18 tolerated(0.1) probably_damaging(0.943) TCGA-ZF-AA4V-01 2 43970992 43970992 C T PLEKHH2 Missense_Mutation p.S1140F 0.09 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4V-01 2 47709968 47709968 C G MSH2 Silent p.P895P 0.28 TCGA-ZF-AA4V-01 2 48602438 48602438 G A FOXN2 Silent p.K384K 0.23 TCGA-ZF-AA4V-01 2 48915552 48915552 G C LHCGR Missense_Mutation p.L462V 0.13 tolerated(0.08) benign(0.047) TCGA-ZF-AA4V-01 2 55439866 55439866 C A CLHC1 Missense_Mutation p.D148Y 0.19 tolerated(0.05) benign(0.021) TCGA-ZF-AA4V-01 2 55559806 55559806 C T CCDC88A Silent p.K917K 0.15 TCGA-ZF-AA4V-01 2 56419820 56419820 A G CCDC85A Missense_Mutation p.N162S 0.39 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4V-01 2 61149307 61149307 G A REL Missense_Mutation p.M499I 0.28 tolerated_low_confidence(0.53) benign(0.002) TCGA-ZF-AA4V-01 2 63175429 63175429 G A EHBP1 Missense_Mutation p.R518Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4V-01 2 66665039 66665039 C T MEIS1 Silent p.P61P 0.30 TCGA-ZF-AA4V-01 2 68609729 68609729 G A PLEK Missense_Mutation p.E146K 0.17 tolerated(0.69) possibly_damaging(0.846) TCGA-ZF-AA4V-01 2 7137190 7137190 C T RNF144A Silent p.L45L 0.21 TCGA-ZF-AA4V-01 2 71592714 71592714 G A ZNF638 Missense_Mutation p.A625T 0.23 tolerated(0.14) benign(0.001) TCGA-ZF-AA4V-01 2 73996452 73996452 T C DUSP11 Missense_Mutation p.D192G 0.19 tolerated(0.1) benign(0.17) TCGA-ZF-AA4V-01 2 74699247 74699247 C T MRPL53 Silent p.%3D 0.35 TCGA-ZF-AA4V-01 2 74699739 74699739 G A MRPL53 Missense_Mutation p.R17W 0.23 tolerated(0.19) possibly_damaging(0.735) TCGA-ZF-AA4V-01 2 74701657 74701657 C T CCDC142 3'UTR 0.21 TCGA-ZF-AA4V-01 2 80085171 80085171 G A CTNNA2 Missense_Mutation p.A111T 0.15 tolerated(0.35) benign(0.396) TCGA-ZF-AA4V-01 2 9528444 9528444 G A ASAP2 Missense_Mutation p.D718N 0.25 tolerated(0.42) benign(0.25) TCGA-ZF-AA4V-01 2 9613060 9613060 G A CPSF3 Missense_Mutation p.E657K 0.24 tolerated(0.24) benign(0.004) TCGA-ZF-AA4V-01 2 97213236 97213236 G A ARID5A Silent p.Q34Q 0.21 TCGA-ZF-AA4V-01 2 98409038 98409038 C T TMEM131 Missense_Mutation p.E1319K 0.19 tolerated_low_confidence(0.19) benign(0.054) TCGA-ZF-AA4V-01 3 101038590 101038590 G C IMPG2 Missense_Mutation p.L58V 0.14 deleterious(0.04) benign(0.282) TCGA-ZF-AA4V-01 3 101038625 101038625 G C IMPG2 Missense_Mutation p.S46C 0.20 deleterious(0.01) possibly_damaging(0.838) TCGA-ZF-AA4V-01 3 109056351 109056351 G T DPPA4 Missense_Mutation p.S5Y 0.12 tolerated_low_confidence(0.06) benign(0.001) TCGA-ZF-AA4V-01 3 111603689 111603689 A G PHLDB2 Silent p.S255S 0.46 TCGA-ZF-AA4V-01 3 111794194 111794194 C G TMPRSS7 Missense_Mutation p.H478D 0.17 tolerated(0.57) benign(0.003) TCGA-ZF-AA4V-01 3 111950214 111950214 T C SLC9C1 Silent p.A522A 0.20 TCGA-ZF-AA4V-01 3 119128351 119128351 C G ARHGAP31 Missense_Mutation p.P552A 0.12 tolerated(0.31) benign(0.005) TCGA-ZF-AA4V-01 3 120365178 120365178 C G HGD Missense_Mutation p.E195D 0.11 tolerated(0.15) benign(0.003) TCGA-ZF-AA4V-01 3 121228550 121228550 C G POLQ Missense_Mutation p.G606A 0.16 tolerated(0.5) benign(0.013) TCGA-ZF-AA4V-01 3 121647952 121647952 C G SLC15A2 Missense_Mutation p.L489V 0.11 tolerated(0.14) benign(0.042) TCGA-ZF-AA4V-01 3 123650067 123650067 G C CCDC14 Missense_Mutation p.L561V 0.26 deleterious(0) possibly_damaging(0.801) TCGA-ZF-AA4V-01 3 124732148 124732148 G A HEG1 Nonsense_Mutation p.Q759* 0.23 TCGA-ZF-AA4V-01 3 124951219 124951219 G A ZNF148 Missense_Mutation p.S784L 0.23 deleterious(0) possibly_damaging(0.469) TCGA-ZF-AA4V-01 3 124952257 124952257 G A ZNF148 Missense_Mutation p.S438L 0.18 tolerated(0.86) benign(0.036) TCGA-ZF-AA4V-01 3 126736395 126736395 C A PLXNA1 Missense_Mutation p.S1135Y 0.22 deleterious(0) possibly_damaging(0.73) TCGA-ZF-AA4V-01 3 127771638 127771638 C T SEC61A1 Intron 0.14 TCGA-ZF-AA4V-01 3 128631731 128631731 G A ACAD9 3'UTR 0.15 TCGA-ZF-AA4V-01 3 129034689 129034689 C T H1FX Silent p.K19K 0.19 TCGA-ZF-AA4V-01 3 130889624 130889624 A T NEK11 Missense_Mutation p.D431V 0.18 tolerated(0.05) benign(0.288) TCGA-ZF-AA4V-01 3 133374180 133374180 T A TOPBP1 Missense_Mutation p.Q232H 0.35 deleterious(0.03) benign(0.171) TCGA-ZF-AA4V-01 3 133475801 133475801 G A TF Missense_Mutation p.R273Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4V-01 3 133525481 133525481 G A SRPRB Silent p.R61R 0.06 TCGA-ZF-AA4V-01 3 137822349 137822349 C G DZIP1L Missense_Mutation p.Q155H 0.28 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 3 138376657 138376657 T C PIK3CB Silent p.G939G 0.44 TCGA-ZF-AA4V-01 3 14746120 14746120 C T C3orf20 Silent p.F385F 0.15 TCGA-ZF-AA4V-01 3 148583134 148583134 C T CPA3 Missense_Mutation p.L14F 0.14 tolerated(0.16) benign(0.01) TCGA-ZF-AA4V-01 3 152554519 152554519 C T P2RY1 Silent p.N316N 0.13 TCGA-ZF-AA4V-01 3 154886342 154886342 C G MME Missense_Mutation p.N614K 0.40 tolerated(0.58) possibly_damaging(0.764) TCGA-ZF-AA4V-01 3 15604909 15604909 G A HACL1 Missense_Mutation p.L554F 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-ZF-AA4V-01 3 15604911 15604911 G A HACL1 Missense_Mutation p.S553F 0.17 tolerated(0.05) possibly_damaging(0.595) TCGA-ZF-AA4V-01 3 156139409 156139409 C T KCNAB1 Missense_Mutation p.L94F 0.09 deleterious(0) probably_damaging(0.974) TCGA-ZF-AA4V-01 3 158262170 158262170 T C RSRC1 3'UTR 0.23 TCGA-ZF-AA4V-01 3 164906176 164906176 C G SLITRK3 Missense_Mutation p.E815Q 0.19 tolerated(0.07) benign(0.311) TCGA-ZF-AA4V-01 3 164907884 164907884 A G SLITRK3 Silent p.S245S 0.44 TCGA-ZF-AA4V-01 3 169487204 169487204 G A ACTRT3 Silent p.I35I 0.20 TCGA-ZF-AA4V-01 3 179096596 179096596 C T MFN1 Silent p.I552I 0.20 TCGA-ZF-AA4V-01 3 180325659 180325659 G A TTC14 Intron 0.38 TCGA-ZF-AA4V-01 3 183396981 183396981 T C KLHL24 Silent p.S570S 0.20 TCGA-ZF-AA4V-01 3 183822015 183822015 G A HTR3E Missense_Mutation p.G109S 0.12 tolerated(0.08) possibly_damaging(0.718) TCGA-ZF-AA4V-01 3 183855689 183855689 G C EIF2B5 Missense_Mutation p.L170F 0.29 tolerated(0.09) benign(0.174) TCGA-ZF-AA4V-01 3 184093744 184093744 G A THPO Missense_Mutation p.P25S 0.17 deleterious(0.02) probably_damaging(0.965) TCGA-ZF-AA4V-01 3 185997708 185997708 G A DGKG Silent p.L242L 0.24 TCGA-ZF-AA4V-01 3 186572087 186572087 T C ADIPOQ Missense_Mutation p.V110A 0.38 tolerated(0.13) benign(0.009) TCGA-ZF-AA4V-01 3 186953885 186953885 C G MASP1 Missense_Mutation p.G592R 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 3 187416376 187416376 G A RTP2 Silent p.F196F 0.15 TCGA-ZF-AA4V-01 3 187446846 187446846 G A BCL6 Silent p.I449I 0.20 TCGA-ZF-AA4V-01 3 189713102 189713102 C G LEPREL1 Missense_Mutation p.D204H 0.22 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA4V-01 3 192125872 192125872 C T FGF12 Silent p.G47G 0.15 TCGA-ZF-AA4V-01 3 192992879 192992879 G C ATP13A5 Silent p.L1203L 0.14 TCGA-ZF-AA4V-01 3 193175244 193175244 A T ATP13A4 Missense_Mutation p.F562Y 0.43 deleterious(0.03) benign(0.002) TCGA-ZF-AA4V-01 3 193854187 193854187 G C HES1 Missense_Mutation p.M6I 0.13 tolerated_low_confidence(0.35) benign(0.13) TCGA-ZF-AA4V-01 3 195690254 195690254 C G SDHAP1 RNA 0.15 TCGA-ZF-AA4V-01 3 195960204 195960204 G C SLC51A 3'UTR 0.20 TCGA-ZF-AA4V-01 3 196509530 196509530 G T PAK2 Nonsense_Mutation p.G5* 0.15 TCGA-ZF-AA4V-01 3 196674502 196674502 G A PIGZ Silent p.L422L 0.24 TCGA-ZF-AA4V-01 3 25778852 25778852 C T NGLY1 Missense_Mutation p.E326K 0.31 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 3 37367249 37367249 C A GOLGA4 Missense_Mutation p.S1313Y 0.32 probably_damaging(0.996) TCGA-ZF-AA4V-01 3 37367409 37367409 G A GOLGA4 Silent p.L1366L 0.27 TCGA-ZF-AA4V-01 3 38167707 38167707 C A ACAA1 Missense_Mutation p.D315Y 0.07 deleterious(0.04) probably_damaging(0.958) TCGA-ZF-AA4V-01 3 38565820 38565820 G A EXOG Silent p.E358E 0.27 TCGA-ZF-AA4V-01 3 39162592 39162592 C T TTC21A Silent p.L343L 0.25 TCGA-ZF-AA4V-01 3 42680347 42680347 A G NKTR Missense_Mutation p.I1051V 0.51 tolerated_low_confidence(1) benign(0.006) TCGA-ZF-AA4V-01 3 42705397 42705397 A G ZBTB47 Missense_Mutation p.K616E 0.18 deleterious(0) unknown(0) TCGA-ZF-AA4V-01 3 47888001 47888001 G A DHX30 Missense_Mutation p.R480Q 0.33 tolerated(0.55) benign(0.076) TCGA-ZF-AA4V-01 3 48309864 48309864 C T ZNF589 Missense_Mutation p.S228L 0.26 deleterious(0.02) benign(0.376) TCGA-ZF-AA4V-01 3 48646698 48646698 G A UQCRC1 Missense_Mutation p.A36V 0.30 tolerated(0.3) benign(0.008) TCGA-ZF-AA4V-01 3 48679390 48679390 G C CELSR3 Silent p.L2906L 0.18 TCGA-ZF-AA4V-01 3 4878522 4878522 G T ITPR1 Missense_Mutation p.G2683V 0.26 tolerated(0.1) probably_damaging(1) TCGA-ZF-AA4V-01 3 49166566 49166566 G A LAMB2 Nonsense_Mutation p.Q540* 0.21 TCGA-ZF-AA4V-01 3 49321491 49321491 G A USP4 Silent p.V823V 0.22 TCGA-ZF-AA4V-01 3 50252859 50252859 T C SLC38A3 RNA 0.35 TCGA-ZF-AA4V-01 3 50402600 50402600 C T CACNA2D2 Silent p.Q1045Q 0.21 TCGA-ZF-AA4V-01 3 52263176 52263176 G C TWF2 Silent p.L308L 0.25 TCGA-ZF-AA4V-01 3 52418835 52418835 T C DNAH1 Missense_Mutation p.S2786P 0.40 benign(0.116) TCGA-ZF-AA4V-01 3 52425569 52425569 G T DNAH1 Silent p.T3334T 0.25 TCGA-ZF-AA4V-01 3 52429619 52429619 C T DNAH1 Silent p.F3728F 0.14 TCGA-ZF-AA4V-01 3 52818337 52818337 C G ITIH1 Silent p.L417L 0.22 TCGA-ZF-AA4V-01 3 53891011 53891011 G A IL17RB Missense_Mutation p.E224K 0.15 tolerated(0.07) benign(0.015) TCGA-ZF-AA4V-01 3 56114897 56114897 A G ERC2 Missense_Mutation p.M530T 0.24 deleterious(0) benign(0.348) TCGA-ZF-AA4V-01 3 57487120 57487120 G C DNAH12 Silent p.L421L 0.12 TCGA-ZF-AA4V-01 3 57494894 57494894 T C DNAH12 Missense_Mutation p.E172G 0.19 deleterious(0.01) benign(0.047) TCGA-ZF-AA4V-01 3 57646498 57646498 C - DENND6A Frame_Shift_Del p.V230Wfs*2 0.18 TCGA-ZF-AA4V-01 3 9793520 9793520 A G OGG1 Missense_Mutation p.N151S 0.22 deleterious(0) probably_damaging(0.919) TCGA-ZF-AA4V-01 4 113567980 113567980 A T LARP7 Missense_Mutation p.I148F 0.33 deleterious(0.01) possibly_damaging(0.845) TCGA-ZF-AA4V-01 4 114276537 114276537 G C ANK2 Missense_Mutation p.E2255Q 0.29 benign(0.056) TCGA-ZF-AA4V-01 4 114900117 114900117 T G ARSJ 5'UTR 0.23 TCGA-ZF-AA4V-01 4 1161132 1161132 G A SPON2 3'UTR 0.31 TCGA-ZF-AA4V-01 4 120213550 120213550 C A USP53 Silent p.P802P 0.35 TCGA-ZF-AA4V-01 4 121739614 121739614 G C PRDM5 Missense_Mutation p.L182V 0.22 deleterious(0) possibly_damaging(0.899) TCGA-ZF-AA4V-01 4 122599105 122599105 C A ANXA5 Missense_Mutation p.A159S 0.24 deleterious(0.01) benign(0.37) TCGA-ZF-AA4V-01 4 123255642 123255642 C T KIAA1109 Silent p.S3930S 0.30 TCGA-ZF-AA4V-01 4 126336276 126336276 C T FAT4 Missense_Mutation p.S2053F 0.20 probably_damaging(0.979) TCGA-ZF-AA4V-01 4 126371115 126371115 C G FAT4 Missense_Mutation p.Q2982E 0.35 benign(0.001) TCGA-ZF-AA4V-01 4 13602476 13602476 G A BOD1L1 Silent p.V2016V 0.27 TCGA-ZF-AA4V-01 4 141789490 141789490 C T RNF150 Silent p.L414L 0.32 TCGA-ZF-AA4V-01 4 151141927 151141927 G C DCLK2 Missense_Mutation p.E394Q 0.25 tolerated(0.07) possibly_damaging(0.549) TCGA-ZF-AA4V-01 4 151223904 151223904 G A LRBA Silent p.V2641V 0.32 TCGA-ZF-AA4V-01 4 154517526 154517526 C G KIAA0922 Silent p.L704L 0.29 TCGA-ZF-AA4V-01 4 158257000 158257000 A G GRIA2 Missense_Mutation p.N482D 0.45 tolerated(0.34) probably_damaging(0.999) TCGA-ZF-AA4V-01 4 164247254 164247254 A G NPY1R Silent p.N151N 0.37 TCGA-ZF-AA4V-01 4 164272531 164272531 G A NPY5R Missense_Mutation p.R369K 0.25 tolerated(0.41) benign(0.129) TCGA-ZF-AA4V-01 4 164394526 164394526 C G TKTL2 Missense_Mutation p.V121L 0.31 deleterious(0.02) possibly_damaging(0.688) TCGA-ZF-AA4V-01 4 175565132 175565132 T A GLRA3 Silent p.P400P 0.30 TCGA-ZF-AA4V-01 4 185616478 185616478 G C CENPU Missense_Mutation p.I407M 0.22 deleterious(0) probably_damaging(0.94) TCGA-ZF-AA4V-01 4 186318345 186318345 C T ANKRD37 Silent p.V23V 0.28 TCGA-ZF-AA4V-01 4 189020124 189020124 T A TRIML2 Intron 0.37 TCGA-ZF-AA4V-01 4 3451116 3451116 G A HGFAC Silent p.R646R 0.33 TCGA-ZF-AA4V-01 4 3768916 3768916 G A ADRA2C Missense_Mutation p.D195N 0.30 tolerated(0.44) benign(0.112) TCGA-ZF-AA4V-01 4 39483091 39483091 C T LIAS 3'Flank 0.33 TCGA-ZF-AA4V-01 4 47900853 47900853 C G NFXL1 Missense_Mutation p.R337T 0.19 deleterious(0.01) possibly_damaging(0.809) TCGA-ZF-AA4V-01 4 49032967 49032967 C T CWH43 Missense_Mutation p.H500Y 0.32 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA4V-01 4 5699372 5699372 G T EVC2 Missense_Mutation p.D77E 0.25 tolerated_low_confidence(0.49) benign(0.002) TCGA-ZF-AA4V-01 4 70080566 70080566 G A UGT2B11 5'Flank 0.41 TCGA-ZF-AA4V-01 4 70620790 70620790 G C SULT1B1 Nonsense_Mutation p.S49* 0.35 TCGA-ZF-AA4V-01 4 71275125 71275125 G A PROL1 Missense_Mutation p.R27K 0.32 tolerated_low_confidence(0.47) benign(0.14) TCGA-ZF-AA4V-01 4 74008085 74008085 C T ANKRD17 Silent p.L701L 0.38 TCGA-ZF-AA4V-01 4 75673319 75673319 C T BTC Missense_Mutation p.E157K 0.32 deleterious(0.04) benign(0.076) TCGA-ZF-AA4V-01 4 76532404 76532404 C G CDKL2 Missense_Mutation p.A169P 0.29 deleterious(0.02) probably_damaging(0.995) TCGA-ZF-AA4V-01 4 77003299 77003299 A G ART3 Missense_Mutation p.Y131C 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA4V-01 4 77680748 77680748 A G SHROOM3 Missense_Mutation p.Y1750C 0.26 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 4 7817744 7817744 C T AFAP1 Splice_Site p.X302_splice 0.22 TCGA-ZF-AA4V-01 4 83825922 83825922 G C THAP9 Missense_Mutation p.W38C 0.34 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 4 88344048 88344048 C T NUDT9 5'UTR 0.18 TCGA-ZF-AA4V-01 4 96046237 96046237 C T BMPR1B Nonsense_Mutation p.Q214* 0.31 TCGA-ZF-AA4V-01 4 99030392 99030392 T A STPG2 Missense_Mutation p.E151V 0.22 deleterious(0.05) benign(0.025) TCGA-ZF-AA4V-01 5 10249987 10249987 G A FAM173B 5'UTR 0.40 TCGA-ZF-AA4V-01 5 108281874 108281874 C T FER Missense_Mutation p.S427L 0.24 tolerated(0.34) benign(0.092) TCGA-ZF-AA4V-01 5 115177286 115177286 G A ATG12 5'UTR 0.27 TCGA-ZF-AA4V-01 5 125828638 125828638 A G GRAMD3 Missense_Mutation p.N445S 0.33 deleterious(0.04) benign(0.146) TCGA-ZF-AA4V-01 5 133896638 133896638 T C JADE2 Silent p.C225C 0.27 TCGA-ZF-AA4V-01 5 137846293 137846293 T A ETF1 Silent p.P348P 0.31 TCGA-ZF-AA4V-01 5 13792266 13792266 G A DNAH5 Missense_Mutation p.S2762F 0.14 benign(0) TCGA-ZF-AA4V-01 5 139192916 139192916 G A PSD2 Missense_Mutation p.D132N 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-ZF-AA4V-01 5 140389347 140389347 C T PCDHAC1 Missense_Mutation p.S906F 0.29 deleterious(0) probably_damaging(0.921) TCGA-ZF-AA4V-01 5 140516636 140516636 G A PCDHB5 Silent p.L540L 0.34 TCGA-ZF-AA4V-01 5 140711111 140711111 G C PCDHGA1 Missense_Mutation p.R287T 0.36 tolerated_low_confidence(0.06) benign(0.103) TCGA-ZF-AA4V-01 5 140772943 140772943 G C PCDHGA8 Missense_Mutation p.G188A 0.38 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-ZF-AA4V-01 5 140866533 140866533 T A PCDHGC4 Nonsense_Mutation p.L598* 0.31 TCGA-ZF-AA4V-01 5 146257761 146257761 G C PPP2R2B Intron 0.29 TCGA-ZF-AA4V-01 5 156381553 156381553 C T TIMD4 Silent p.P91P 0.36 TCGA-ZF-AA4V-01 5 156727863 156727863 C A CYFIP2 Missense_Mutation p.N150K 0.24 deleterious(0) probably_damaging(0.928) TCGA-ZF-AA4V-01 5 161324431 161324431 C G GABRA1 3'UTR 0.26 TCGA-ZF-AA4V-01 5 167993205 167993205 C A PANK3 Missense_Mutation p.D150Y 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4V-01 5 172661786 172661786 C T NKX2-5 Missense_Mutation p.D101N 0.31 tolerated(0.08) probably_damaging(0.959) TCGA-ZF-AA4V-01 5 175925944 175925944 G A FAF2 Missense_Mutation p.R290K 0.21 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 5 178139118 178139118 G A ZNF354A Silent p.F587F 0.18 TCGA-ZF-AA4V-01 5 179564679 179564679 G C RASGEF1C Missense_Mutation p.R71G 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-AA4V-01 5 24509744 24509744 T C CDH10 Missense_Mutation p.D396G 0.22 tolerated(0.16) probably_damaging(0.992) TCGA-ZF-AA4V-01 5 32108319 32108319 G A PDZD2 3'UTR 0.57 TCGA-ZF-AA4V-01 5 38924610 38924610 C G OSMR Missense_Mutation p.Q653E 0.18 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA4V-01 5 41762297 41762297 C T OXCT1 Silent p.K418K 0.47 TCGA-ZF-AA4V-01 5 43506427 43506427 C T C5orf34 Missense_Mutation p.E119K 0.45 tolerated(0.14) benign(0.234) TCGA-ZF-AA4V-01 5 464459 464459 G C EXOC3 Missense_Mutation p.D570H 0.02 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA4V-01 5 78350089 78350089 C T DMGDH Missense_Mutation p.R153Q 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-AA4V-01 5 7863022 7863022 C T FASTKD3 Missense_Mutation p.R538K 0.44 tolerated(1) benign(0.001) TCGA-ZF-AA4V-01 5 78936676 78936676 G A PAPD4 Silent p.L156L 0.32 TCGA-ZF-AA4V-01 5 887506 887506 G A BRD9 Silent p.I229I 0.08 TCGA-ZF-AA4V-01 5 889796 889796 G A BRD9 Intron 0.03 TCGA-ZF-AA4V-01 5 90281277 90281277 T A GPR98 Silent p.V6030V 0.47 TCGA-ZF-AA4V-01 6 10528976 10528976 A T GCNT2 5'UTR 0.21 TCGA-ZF-AA4V-01 6 10876753 10876753 C T GCM2 Silent p.L127L 0.20 TCGA-ZF-AA4V-01 6 109311966 109311966 C T SESN1 Missense_Mutation p.E436K 0.15 deleterious(0.02) possibly_damaging(0.907) TCGA-ZF-AA4V-01 6 109415196 109415196 G A SESN1 Silent p.N27N 0.26 TCGA-ZF-AA4V-01 6 110620123 110620123 A T METTL24 Splice_Site p.X262_splice 0.39 TCGA-ZF-AA4V-01 6 114265514 114265514 A G HDAC2 Silent p.A384A 0.42 TCGA-ZF-AA4V-01 6 116911482 116911482 G A RWDD1 Nonsense_Mutation p.W154* 0.13 TCGA-ZF-AA4V-01 6 116938321 116938321 G C RSPH4A Missense_Mutation p.D179H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.824) TCGA-ZF-AA4V-01 6 117046958 117046958 G A KPNA5 Silent p.L348L 0.15 TCGA-ZF-AA4V-01 6 117609632 117609632 T G ROS1 3'UTR 0.27 TCGA-ZF-AA4V-01 6 118024866 118024866 G T NUS1 Missense_Mutation p.V264F 0.41 deleterious(0) benign(0.01) TCGA-ZF-AA4V-01 6 118635419 118635419 G A SLC35F1 3'UTR 0.23 TCGA-ZF-AA4V-01 6 125269155 125269155 T A RP11-510H23.1 RNA 0.19 TCGA-ZF-AA4V-01 6 125283978 125283978 C T RP11-510H23.1 RNA 0.24 TCGA-ZF-AA4V-01 6 128134134 128134134 G A THEMIS Missense_Mutation p.S551L 0.18 tolerated(0.27) benign(0.002) TCGA-ZF-AA4V-01 6 132874348 132874348 G A TAAR8 Missense_Mutation p.D173N 0.20 tolerated(0.23) benign(0.022) TCGA-ZF-AA4V-01 6 139100964 139100964 T A CCDC28A Missense_Mutation p.M145K 0.48 tolerated(0.77) benign(0.035) TCGA-ZF-AA4V-01 6 142711429 142711429 G C GPR126 Missense_Mutation p.Q419H 0.08 tolerated(0.51) benign(0.003) TCGA-ZF-AA4V-01 6 144803404 144803404 C T UTRN Silent p.I1189I 0.28 TCGA-ZF-AA4V-01 6 149867084 149867084 C T PPIL4 Missense_Mutation p.E20K 0.22 tolerated(0.14) benign(0.098) TCGA-ZF-AA4V-01 6 152737662 152737662 C G SYNE1 Missense_Mutation p.Q1970H 0.23 possibly_damaging(0.75) TCGA-ZF-AA4V-01 6 154567864 154567864 G A IPCEF1 Missense_Mutation p.S36L 0.21 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA4V-01 6 157525063 157525063 G A ARID1B Nonsense_Mutation p.W1653* 0.45 TCGA-ZF-AA4V-01 6 158870054 158870054 G A TULP4 Silent p.Q190Q 0.43 TCGA-ZF-AA4V-01 6 159650896 159650896 C T FNDC1 Silent p.S410S 0.21 TCGA-ZF-AA4V-01 6 160464285 160464285 G A IGF2R Missense_Mutation p.R529Q 0.19 tolerated(0.57) benign(0.026) TCGA-ZF-AA4V-01 6 161560503 161560503 C G AGPAT4 Missense_Mutation p.R331S 0.24 tolerated(0.42) benign(0) TCGA-ZF-AA4V-01 6 163149062 163149062 T C PACRG Intron 0.50 TCGA-ZF-AA4V-01 6 18122648 18122648 G A NHLRC1 Silent p.L64L 0.16 TCGA-ZF-AA4V-01 6 21595158 21595158 G A SOX4 Silent p.R131R 0.16 TCGA-ZF-AA4V-01 6 24145795 24145795 C T NRSN1 Missense_Mutation p.T70I 0.16 tolerated(0.53) benign(0.005) TCGA-ZF-AA4V-01 6 26032069 26032069 C T HIST1H3B Missense_Mutation p.E74K 0.25 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-ZF-AA4V-01 6 26431875 26431875 C T BTN2A3P RNA 0.25 TCGA-ZF-AA4V-01 6 30638837 30638837 G A DHX16 Missense_Mutation p.S141F 0.58 deleterious(0.04) unknown(0) TCGA-ZF-AA4V-01 6 31106554 31106554 C T PSORS1C1 Silent p.F55F 0.60 TCGA-ZF-AA4V-01 6 31797684 31797684 G C HSPA1B 3'UTR 0.15 TCGA-ZF-AA4V-01 6 31827906 31827906 C G NEU1 Missense_Mutation p.E312Q 0.63 tolerated(0.11) possibly_damaging(0.817) TCGA-ZF-AA4V-01 6 32016207 32016207 G A TNXB 5'Flank 0.47 TCGA-ZF-AA4V-01 6 34855677 34855677 C T TAF11 Missense_Mutation p.E20K 0.32 tolerated(0.07) benign(0.242) TCGA-ZF-AA4V-01 6 36724064 36724064 C T CPNE5 Silent p.P289P 0.36 TCGA-ZF-AA4V-01 6 41250355 41250355 C G TREM1 Missense_Mutation p.E62Q 0.23 tolerated(0.39) benign(0.04) TCGA-ZF-AA4V-01 6 42541690 42541690 T A UBR2 Nonsense_Mutation p.C99* 0.18 TCGA-ZF-AA4V-01 6 43221060 43221060 T C TTBK1 Silent p.C96C 0.33 TCGA-ZF-AA4V-01 6 43306539 43306539 G A ZNF318 Missense_Mutation p.P1733S 0.31 benign(0.04) TCGA-ZF-AA4V-01 6 43307536 43307536 G C ZNF318 Silent p.L1400L 0.33 TCGA-ZF-AA4V-01 6 49425571 49425571 G A MUT Missense_Mutation p.L196F 0.29 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-ZF-AA4V-01 6 51889428 51889428 G A PKHD1 Missense_Mutation p.S1727L 0.24 tolerated(0.09) probably_damaging(0.984) TCGA-ZF-AA4V-01 6 56919288 56919288 A G KIAA1586 Missense_Mutation p.Y664C 0.17 deleterious(0.05) benign(0) TCGA-ZF-AA4V-01 6 617745 617745 G A EXOC2 Silent p.L209L 0.15 TCGA-ZF-AA4V-01 6 71010049 71010049 G C COL9A1 Silent p.L43L 0.22 TCGA-ZF-AA4V-01 6 74171889 74171889 C T MTO1 Intron 0.21 TCGA-ZF-AA4V-01 6 75836144 75836144 C T COL12A1 Nonsense_Mutation p.W2128* 0.34 TCGA-ZF-AA4V-01 6 79711637 79711637 G A PHIP Nonsense_Mutation p.Q620* 0.68 TCGA-ZF-AA4V-01 6 83949351 83949351 T C ME1 Silent p.T273T 0.08 TCGA-ZF-AA4V-01 6 83949352 83949352 G T ME1 Missense_Mutation p.T273K 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 6 84300933 84300933 C A SNAP91 Missense_Mutation p.A671S 0.18 tolerated(0.36) possibly_damaging(0.753) TCGA-ZF-AA4V-01 6 86176992 86176992 C G NT5E Nonsense_Mutation p.S185* 0.39 TCGA-ZF-AA4V-01 6 87965030 87965030 G C ZNF292 Missense_Mutation p.Q561H 0.39 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4V-01 6 89790641 89790641 G A PNRC1 Missense_Mutation p.E10K 0.11 deleterious_low_confidence(0) benign(0.168) TCGA-ZF-AA4V-01 6 97626354 97626354 C T MMS22L Missense_Mutation p.E882K 0.16 tolerated(0.37) benign(0.254) TCGA-ZF-AA4V-01 7 100391638 100391638 C G ZAN Intron 0.38 TCGA-ZF-AA4V-01 7 100457579 100457579 C G SLC12A9 Missense_Mutation p.I350M 0.31 deleterious(0.03) benign(0.396) TCGA-ZF-AA4V-01 7 100481999 100481999 G C SRRT Missense_Mutation p.K256N 0.15 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4V-01 7 100730774 100730774 G C TRIM56 Missense_Mutation p.E61Q 0.22 tolerated(0.18) probably_damaging(0.994) TCGA-ZF-AA4V-01 7 106841956 106841956 C T HBP1 3'UTR 0.38 TCGA-ZF-AA4V-01 7 107399329 107399329 G A CBLL1 Silent p.Q394Q 0.29 TCGA-ZF-AA4V-01 7 11053504 11053504 T C PHF14 Silent p.D392D 0.22 TCGA-ZF-AA4V-01 7 116340201 116340201 G A MET Missense_Mutation p.E355K 0.28 tolerated(0.11) probably_damaging(0.996) TCGA-ZF-AA4V-01 7 129474824 129474824 A C UBE2H Missense_Mutation p.S169A 0.35 tolerated(0.08) benign(0.13) TCGA-ZF-AA4V-01 7 133682304 133682304 A T EXOC4 Missense_Mutation p.I756F 0.36 tolerated(0.08) possibly_damaging(0.798) TCGA-ZF-AA4V-01 7 142494822 142494822 C T TRBJ2-5 Silent p.F7F 0.44 TCGA-ZF-AA4V-01 7 148951224 148951224 C T ZNF212 Silent p.V402V 0.21 TCGA-ZF-AA4V-01 7 148951299 148951299 C T ZNF212 Silent p.L427L 0.24 TCGA-ZF-AA4V-01 7 151181846 151181846 G A RHEB Nonsense_Mutation p.Q57* 0.39 TCGA-ZF-AA4V-01 7 151845834 151845834 T C KMT2C Missense_Mutation p.D4393G 0.26 probably_damaging(0.999) TCGA-ZF-AA4V-01 7 154684556 154684556 G T DPP6 3'UTR 0.34 TCGA-ZF-AA4V-01 7 154767729 154767729 C T PAXIP1 Missense_Mutation p.D251N 0.33 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-ZF-AA4V-01 7 158424360 158424360 A C NCAPG2 Nonstop_Mutation p.*1144Eext*14 0.25 TCGA-ZF-AA4V-01 7 18067312 18067312 T C PRPS1L1 Missense_Mutation p.T32A 0.21 tolerated(0.11) benign(0) TCGA-ZF-AA4V-01 7 2420138 2420138 C T EIF3B 3'UTR 0.18 TCGA-ZF-AA4V-01 7 26709767 26709767 G A SKAP2 Silent p.A344A 0.23 TCGA-ZF-AA4V-01 7 37780027 37780027 C T GPR141 Missense_Mutation p.S11F 0.20 deleterious(0.02) benign(0.007) TCGA-ZF-AA4V-01 7 5427897 5427897 C T TNRC18 Missense_Mutation p.A520T 0.30 benign(0.002) TCGA-ZF-AA4V-01 7 5997592 5997592 C T RSPH10B Missense_Mutation p.M242I 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-ZF-AA4V-01 7 6820975 6820975 G A RSPH10B2 Silent p.E542E 0.19 TCGA-ZF-AA4V-01 7 72420014 72420014 C T POM121 3'UTR 0.47 TCGA-ZF-AA4V-01 7 75066940 75066940 G A POM121C Silent p.L111L 0.30 TCGA-ZF-AA4V-01 7 7625272 7625272 C T MIOS Silent p.L552L 0.24 TCGA-ZF-AA4V-01 7 7628192 7628192 C G MIOS Missense_Mutation p.Q628E 0.14 deleterious(0.01) benign(0.198) TCGA-ZF-AA4V-01 7 76959518 76959519 - CTCG GSAP Intron 0.27 TCGA-ZF-AA4V-01 7 77755139 77755139 T C MAGI2 Missense_Mutation p.T1147A 0.34 tolerated(0.09) probably_damaging(0.996) TCGA-ZF-AA4V-01 7 83277821 83277821 C A SEMA3E Missense_Mutation p.W13L 0.19 tolerated(0.39) benign(0.01) TCGA-ZF-AA4V-01 7 88423870 88423870 C T C7orf62 Missense_Mutation p.M129I 0.16 tolerated(0.76) benign(0.004) TCGA-ZF-AA4V-01 7 94993301 94993301 A T PON3 Missense_Mutation p.L190Q 0.36 deleterious(0) probably_damaging(0.978) TCGA-ZF-AA4V-01 7 98569460 98569460 G C TRRAP Missense_Mutation p.Q2570H 0.31 benign(0.086) TCGA-ZF-AA4V-01 8 100654246 100654246 A G VPS13B Missense_Mutation p.I1835V 0.34 tolerated(0.2) possibly_damaging(0.456) TCGA-ZF-AA4V-01 8 101721811 101721811 C T PABPC1 Missense_Mutation p.R374H 0.25 deleterious(0.01) possibly_damaging(0.684) TCGA-ZF-AA4V-01 8 103226331 103226331 G A RRM2B Missense_Mutation p.S247L 0.33 deleterious_low_confidence(0.03) benign(0.015) TCGA-ZF-AA4V-01 8 108348375 108348375 C T ANGPT1 Intron 0.22 TCGA-ZF-AA4V-01 8 124787454 124787454 C T FAM91A1 Silent p.L75L 0.31 TCGA-ZF-AA4V-01 8 126062839 126062839 C G KIAA0196 Silent p.L722L 0.16 TCGA-ZF-AA4V-01 8 128428768 128428768 G C POU5F1B Missense_Mutation p.E219D 0.07 tolerated(0.61) benign(0.09) TCGA-ZF-AA4V-01 8 134477050 134477050 C G ST3GAL1 Silent p.V218V 0.34 TCGA-ZF-AA4V-01 8 145689768 145689768 G A CYHR1 Intron 0.37 TCGA-ZF-AA4V-01 8 22069113 22069113 G A BMP1 Missense_Mutation p.E945K 0.42 tolerated(0.21) benign(0.128) TCGA-ZF-AA4V-01 8 33369543 33369543 C T TTI2 Missense_Mutation p.E197K 0.42 tolerated(0.05) benign(0.192) TCGA-ZF-AA4V-01 8 37595525 37595528 GGAC - ERLIN2 Frame_Shift_Del p.G29Ifs*12 0.39 TCGA-ZF-AA4V-01 8 42177104 42177104 A G IKBKB Silent p.T506T 0.29 TCGA-ZF-AA4V-01 8 42234537 42234537 C T DKK4 Silent p.L9L 0.45 TCGA-ZF-AA4V-01 8 52284553 52284553 C T PXDNL Missense_Mutation p.G1261S 0.40 tolerated(0.34) benign(0.264) TCGA-ZF-AA4V-01 8 53084641 53084641 C T ST18 Silent p.Q260Q 0.35 TCGA-ZF-AA4V-01 8 59535800 59535800 C T NSMAF Missense_Mutation p.R210K 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA4V-01 8 63976765 63976765 C G TTPA Silent p.R221R 0.35 TCGA-ZF-AA4V-01 8 74204109 74204109 C T RPL7 Silent p.L109L 0.34 TCGA-ZF-AA4V-01 8 82605923 82605923 G T SLC10A5 Missense_Mutation p.Q429K 0.36 deleterious(0.02) benign(0.004) TCGA-ZF-AA4V-01 8 89053943 89053943 A G MMP16 Missense_Mutation p.S524P 0.44 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA4V-01 8 91094304 91094304 G A CALB1 Silent p.L36L 0.32 TCGA-ZF-AA4V-01 8 94808186 94808186 A T TMEM67 Missense_Mutation p.T611S 0.27 tolerated(0.42) benign(0.038) TCGA-ZF-AA4V-01 9 103062879 103062879 G C INVS Missense_Mutation p.E1041Q 0.15 deleterious_low_confidence(0.01) benign(0.394) TCGA-ZF-AA4V-01 9 104171253 104171253 A G ZNF189 Silent p.K401K 0.22 TCGA-ZF-AA4V-01 9 106889711 106889711 G A SMC2 Missense_Mutation p.D914N 0.15 tolerated(0.3) benign(0.026) TCGA-ZF-AA4V-01 9 111853209 111853209 C T TMEM245 Silent p.P381P 0.12 TCGA-ZF-AA4V-01 9 114133921 114133921 C A KIAA0368 Nonsense_Mutation p.G1751* 0.18 TCGA-ZF-AA4V-01 9 116894 116894 G C FOXD4 Missense_Mutation p.S409W 0.61 tolerated(0.07) benign(0.019) TCGA-ZF-AA4V-01 9 120176811 120176811 C T ASTN2 Missense_Mutation p.D136N 0.11 deleterious_low_confidence(0) unknown(0) TCGA-ZF-AA4V-01 9 123919865 123919865 G A CNTRL Missense_Mutation p.D1495N 0.23 possibly_damaging(0.786) TCGA-ZF-AA4V-01 9 125330241 125330241 G T OR1L8 Silent p.S172S 0.25 TCGA-ZF-AA4V-01 9 125437411 125437411 G C OR1L3 Translation_Start_Site p.M1? 0.21 deleterious(0.01) benign(0.002) TCGA-ZF-AA4V-01 9 128697770 128697770 A G PBX3 Missense_Mutation p.S243G 0.30 deleterious(0.04) possibly_damaging(0.734) TCGA-ZF-AA4V-01 9 134405894 134405894 G A UCK1 Nonsense_Mutation p.Q88* 0.19 TCGA-ZF-AA4V-01 9 134405928 134405928 C T UCK1 Silent p.L76L 0.16 TCGA-ZF-AA4V-01 9 135176041 135176041 G A SETX Missense_Mutation p.H1842Y 0.14 tolerated(0.39) benign(0.009) TCGA-ZF-AA4V-01 9 135973980 135973980 G A RALGDS Silent p.I913I 0.20 TCGA-ZF-AA4V-01 9 136213410 136213410 G T MED22 Silent p.I36I 0.16 TCGA-ZF-AA4V-01 9 136671208 136671208 C T VAV2 Silent p.K277K 0.14 TCGA-ZF-AA4V-01 9 140136952 140136952 G C TUBB4B Missense_Mutation p.Q94H 0.27 deleterious_low_confidence(0.03) benign(0.017) TCGA-ZF-AA4V-01 9 14674302 14674302 C A ZDHHC21 Missense_Mutation p.G13C 0.16 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 9 19290806 19290806 G A DENND4C Missense_Mutation p.D245N 0.13 deleterious(0.03) benign(0.067) TCGA-ZF-AA4V-01 9 19450618 19450618 C T ACER2 Missense_Mutation p.S271L 0.14 tolerated(0.37) benign(0.005) TCGA-ZF-AA4V-01 9 2033021 2033021 A G SMARCA2 Missense_Mutation p.M99V 0.50 possibly_damaging(0.572) TCGA-ZF-AA4V-01 9 21015926 21015926 G A PTPLAD2 Silent p.F118F 0.08 TCGA-ZF-AA4V-01 9 32425899 32425899 G A ACO1 Missense_Mutation p.D418N 0.18 tolerated(0.71) benign(0) TCGA-ZF-AA4V-01 9 32542984 32542984 C T TOPORS Silent p.V513V 0.11 TCGA-ZF-AA4V-01 9 33026543 33026543 G C DNAJA1 Missense_Mutation p.E21Q 0.14 deleterious(0.03) probably_damaging(0.942) TCGA-ZF-AA4V-01 9 33026835 33026835 G A DNAJA1 Missense_Mutation p.E53K 0.13 deleterious(0.02) possibly_damaging(0.504) TCGA-ZF-AA4V-01 9 33470057 33470057 A G NOL6 Missense_Mutation p.C171R 0.44 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4V-01 9 34996275 34996275 C T DNAJB5 Silent p.G189G 0.09 TCGA-ZF-AA4V-01 9 35450008 35450008 G A ATP8B5P RNA 0.18 TCGA-ZF-AA4V-01 9 35754165 35754165 G T MSMP 5'UTR 0.13 TCGA-ZF-AA4V-01 9 35825915 35825915 C T FAM221B Missense_Mutation p.E82K 0.14 tolerated(0.15) benign(0.015) TCGA-ZF-AA4V-01 9 38396802 38396802 G C ALDH1B1 Missense_Mutation p.E353Q 0.28 deleterious(0.02) benign(0.329) TCGA-ZF-AA4V-01 9 39086641 39086641 A T CNTNAP3 Intron 0.33 TCGA-ZF-AA4V-01 9 4125841 4125841 G A GLIS3 Silent p.L163L 0.13 TCGA-ZF-AA4V-01 9 5185605 5185605 C T INSL6 5'UTR 0.70 TCGA-ZF-AA4V-01 9 5339740 5339740 G A RLN1 Missense_Mutation p.R3C 0.52 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA4V-01 9 5774178 5774178 G A KIAA1432 Missense_Mutation p.E1402K 0.20 tolerated(0.06) benign(0.092) TCGA-ZF-AA4V-01 9 71842693 71842693 T C TJP2 Missense_Mutation p.I439T 0.19 deleterious(0) possibly_damaging(0.839) TCGA-ZF-AA4V-01 9 72003170 72003170 C T FAM189A2 Missense_Mutation p.S318L 0.36 tolerated(0.71) benign(0.001) TCGA-ZF-AA4V-01 9 72965198 72965198 G C SMC5 Missense_Mutation p.E1020Q 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 9 73426110 73426110 C T TRPM3 Intron 0.20 TCGA-ZF-AA4V-01 9 75773674 75773674 C T ANXA1 Missense_Mutation p.P44S 0.22 deleterious(0.03) benign(0.094) TCGA-ZF-AA4V-01 9 77631211 77631211 A T C9orf41 Missense_Mutation p.I188N 0.20 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA4V-01 9 80409445 80409445 G A GNAQ Silent p.V223V 0.20 TCGA-ZF-AA4V-01 9 90500556 90500556 G A SPATA31E1 Missense_Mutation p.R385Q 0.18 tolerated(0.58) benign(0.41) TCGA-ZF-AA4V-01 9 95043169 95043169 G C IARS Missense_Mutation p.Q202E 0.14 tolerated(1) benign(0.439) TCGA-ZF-AA4V-01 9 95076684 95076684 A G NOL8 Silent p.S741S 0.23 TCGA-ZF-AA4V-01 9 98270475 98270475 C T PTCH1 Missense_Mutation p.D57N 0.20 tolerated(0.34) benign(0.362) TCGA-ZF-AA4V-01 9 990830 990830 C T DMRT3 Missense_Mutation p.S415F 0.48 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-ZF-AA4V-01 X 102192696 102192696 G A RAB40AL Silent p.V150V 0.39 TCGA-ZF-AA4V-01 X 10534931 10534931 C T MID1 Silent p.L219L 0.37 TCGA-ZF-AA4V-01 X 108628458 108628458 C T GUCY2F Missense_Mutation p.G1004R 0.38 deleterious(0) probably_damaging(1) TCGA-ZF-AA4V-01 X 118222888 118222888 G A KIAA1210 Nonsense_Mutation p.Q769* 0.36 TCGA-ZF-AA4V-01 X 118370404 118370404 C T PGRMC1 Silent p.F26F 0.38 TCGA-ZF-AA4V-01 X 119694219 119694219 G A CUL4B Missense_Mutation p.S110F 0.37 tolerated_low_confidence(0.08) benign(0.202) TCGA-ZF-AA4V-01 X 12938348 12938348 T C TLR8 Missense_Mutation p.S397P 0.41 tolerated(0.19) possibly_damaging(0.514) TCGA-ZF-AA4V-01 X 131762712 131762712 T A HS6ST2 Missense_Mutation p.I493F 0.79 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA4V-01 X 153631867 153631867 G A DNASE1L1 Silent p.S136S 0.60 TCGA-ZF-AA4V-01 X 17167194 17167194 G A REPS2 3'UTR 0.36 TCGA-ZF-AA4V-01 X 21393072 21393072 G A CNKSR2 Nonsense_Mutation p.W19* 0.45 TCGA-ZF-AA4V-01 X 24512899 24512899 A G PDK3 Silent p.L49L 0.56 TCGA-ZF-AA4V-01 X 27839619 27839619 G A MAGEB10 Missense_Mutation p.E66K 0.47 tolerated(0.34) benign(0.007) TCGA-ZF-AA4V-01 X 38146396 38146396 C G RPGR Missense_Mutation p.R619T 0.46 benign(0.19) TCGA-ZF-AA4V-01 X 44929132 44929132 C T KDM6A Silent p.V744V 0.42 TCGA-ZF-AA4V-01 X 47918067 47918067 T C ZNF630 Missense_Mutation p.I588M 0.35 deleterious(0.01) benign(0.08) TCGA-ZF-AA4V-01 X 48460562 48460562 C T WDR13 Silent p.I374I 0.32 TCGA-ZF-AA4V-01 X 48681429 48681429 G T HDAC6 Missense_Mutation p.V874F 0.36 tolerated(0.5) benign(0.112) TCGA-ZF-AA4V-01 X 50213562 50213562 G A DGKK RNA 0.32 TCGA-ZF-AA4V-01 X 51486866 51486866 C T GSPT2 Silent p.F48F 0.33 TCGA-ZF-AA4V-01 X 65392276 65392276 G A HEPH Missense_Mutation p.D137N 0.34 tolerated(0.09) probably_damaging(1) TCGA-ZF-AA4V-01 X 71428441 71428441 C G ERCC6L Missense_Mutation p.R59T 0.22 deleterious(0) probably_damaging(0.951) TCGA-ZF-AA4V-01 X 71932685 71932685 C T PHKA1 Missense_Mutation p.G58D 0.24 deleterious(0.01) possibly_damaging(0.819) TCGA-ZF-AA4V-01 X 73053201 73053201 C T XIST RNA 0.40 TCGA-ZF-AA4V-01 X 73811494 73811494 C G RLIM Missense_Mutation p.Q552H 0.37 deleterious(0) probably_damaging(0.984) TCGA-ZF-AA4V-01 X 83419374 83419374 C T RPS6KA6 Missense_Mutation p.D35N 0.24 deleterious_low_confidence(0.05) benign(0.239) TCGA-ZF-AA4V-01 Y 14952353 14952353 G A USP9Y Missense_Mutation p.M1967I 0.55 tolerated(0.33) benign(0) TCGA-ZF-AA4W-01 10 105139367 105139368 - T TAF5 Frame_Shift_Ins p.G375Wfs*9 0.22 TCGA-ZF-AA4W-01 10 105657467 105657467 C T OBFC1 Missense_Mutation p.A198T 0.08 tolerated(0.72) benign(0.004) TCGA-ZF-AA4W-01 10 106075602 106075602 C G ITPRIP Missense_Mutation p.E70Q 0.12 tolerated(0.08) benign(0.035) TCGA-ZF-AA4W-01 10 124457563 124457563 C G C10orf120 Missense_Mutation p.E232Q 0.33 tolerated(0.08) possibly_damaging(0.9) TCGA-ZF-AA4W-01 10 128817063 128817063 G A DOCK1 Missense_Mutation p.A410T 0.21 deleterious(0) possibly_damaging(0.483) TCGA-ZF-AA4W-01 10 129921190 129921190 C T MKI67 Missense_Mutation p.R81Q 0.10 tolerated(1) benign(0.001) TCGA-ZF-AA4W-01 10 32323666 32323666 G A KIF5B Missense_Mutation p.R355W 0.08 deleterious(0) possibly_damaging(0.811) TCGA-ZF-AA4W-01 10 38242099 38242099 C G ZNF25 Missense_Mutation p.Q109H 0.17 tolerated(0.05) benign(0.331) TCGA-ZF-AA4W-01 10 43292282 43292282 C T BMS1 Silent p.C530C 0.13 TCGA-ZF-AA4W-01 10 50667018 50667018 T A ERCC6 Missense_Mutation p.D1442V 0.15 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4W-01 10 50820304 50820304 C T SLC18A3 Silent p.G506G 0.07 TCGA-ZF-AA4W-01 10 52003077 52003077 C T ASAH2 Missense_Mutation p.G132D 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 10 5951128 5951128 A G FBXO18 Silent p.T348T 0.25 TCGA-ZF-AA4W-01 10 64572939 64572939 G A EGR2 3'UTR 0.12 TCGA-ZF-AA4W-01 10 71876426 71876426 G C AIFM2 Missense_Mutation p.L241V 0.13 tolerated(1) benign(0.002) TCGA-ZF-AA4W-01 10 73826744 73826744 T C SPOCK2 Missense_Mutation p.I282V 0.07 tolerated(0.15) benign(0.394) TCGA-ZF-AA4W-01 10 74897807 74897807 G C ECD Missense_Mutation p.I514M 0.19 deleterious(0) possibly_damaging(0.629) TCGA-ZF-AA4W-01 10 8115837 8115837 G A GATA3 Missense_Mutation p.A396T 0.30 tolerated(0.07) benign(0.023) TCGA-ZF-AA4W-01 10 90438298 90438298 C T LIPF Missense_Mutation p.L363F 0.15 tolerated(0.38) benign(0.001) TCGA-ZF-AA4W-01 10 909737 909737 C T LARP4B Missense_Mutation p.A126T 0.25 tolerated(0.8) benign(0.001) TCGA-ZF-AA4W-01 10 93390004 93390004 C G PPP1R3C Missense_Mutation p.D212H 0.19 deleterious(0) probably_damaging(0.974) TCGA-ZF-AA4W-01 10 93778679 93778679 C G BTAF1 Nonsense_Mutation p.S1617* 0.13 TCGA-ZF-AA4W-01 10 94228654 94228654 C G IDE Missense_Mutation p.E768Q 0.20 deleterious(0.04) benign(0.228) TCGA-ZF-AA4W-01 10 95372703 95372703 G A PDE6C Missense_Mutation p.G74D 0.12 tolerated(0.85) benign(0.006) TCGA-ZF-AA4W-01 10 97960799 97960799 C - BLNK Frame_Shift_Del p.G317Efs*69 0.08 TCGA-ZF-AA4W-01 11 108009625 108009625 G A ACAT1 Missense_Mutation p.D146N 0.20 tolerated(0.13) benign(0.128) TCGA-ZF-AA4W-01 11 121483537 121483538 - A SORL1 Frame_Shift_Ins p.V1807Sfs*11 0.25 TCGA-ZF-AA4W-01 11 12315827 12315827 C A MICALCL Silent p.P283P 0.24 TCGA-ZF-AA4W-01 11 123894478 123894478 C A OR10G9 Silent p.P253P 0.14 TCGA-ZF-AA4W-01 11 124489878 124489878 C T PANX3 3'UTR 0.17 TCGA-ZF-AA4W-01 11 125550743 125550743 G A ACRV1 5'UTR 0.07 TCGA-ZF-AA4W-01 11 130331463 130331463 C T ADAMTS15 Missense_Mutation p.S346F 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 11 134118854 134118854 C T THYN1 Splice_Site p.X161_splice 0.21 TCGA-ZF-AA4W-01 11 134131681 134131681 G A ACAD8 Missense_Mutation p.R330Q 0.11 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA4W-01 11 134147328 134147328 G A GLB1L3 Silent p.A44A 0.12 TCGA-ZF-AA4W-01 11 14865508 14865508 C T PDE3B Missense_Mutation p.A819V 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 11 2426112 2426112 C T TRPM5 3'UTR 0.16 TCGA-ZF-AA4W-01 11 33308254 33308254 G A HIPK3 Silent p.Q98Q 0.05 TCGA-ZF-AA4W-01 11 34156814 34156814 G T NAT10 Missense_Mutation p.Q668H 0.10 tolerated(0.16) benign(0.005) TCGA-ZF-AA4W-01 11 36597335 36597335 G T RAG1 Missense_Mutation p.E827D 0.18 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-ZF-AA4W-01 11 46407253 46407253 G A CHRM4 Silent p.R285R 0.16 TCGA-ZF-AA4W-01 11 47187881 47187881 C T ARFGAP2 Missense_Mutation p.G495S 0.08 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4W-01 11 4790464 4790464 G A OR51F1 Silent p.L228L 0.05 TCGA-ZF-AA4W-01 11 4929160 4929160 G A OR51A7 Silent p.L187L 0.07 TCGA-ZF-AA4W-01 11 5444102 5444103 - A OR51Q1 Frame_Shift_Ins p.N226Kfs*10 0.21 TCGA-ZF-AA4W-01 11 55904324 55904324 T G OR8J3 Missense_Mutation p.S291R 0.16 deleterious(0) possibly_damaging(0.835) TCGA-ZF-AA4W-01 11 57094906 57094906 G T SSRP1 Missense_Mutation p.S622Y 0.16 deleterious(0.01) unknown(0) TCGA-ZF-AA4W-01 11 57798643 57798643 C G OR6Q1 Missense_Mutation p.I73M 0.19 tolerated(0.06) benign(0.278) TCGA-ZF-AA4W-01 11 59425145 59425146 - G PATL1 Frame_Shift_Ins p.Q160Pfs*6 0.27 TCGA-ZF-AA4W-01 11 61959661 61959661 G C SCGB1D1 Missense_Mutation p.K63N 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 11 6415175 6415175 G A SMPD1 Missense_Mutation p.E464K 0.13 deleterious(0) possibly_damaging(0.544) TCGA-ZF-AA4W-01 11 64645744 64645744 C A EHD1 Missense_Mutation p.G65W 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 11 6498959 6498959 C A ARFIP2 Nonsense_Mutation p.E287* 0.41 TCGA-ZF-AA4W-01 11 65315555 65315555 G A LTBP3 Intron 0.33 TCGA-ZF-AA4W-01 11 65620391 65620391 C T SNX32 Missense_Mutation p.L374F 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA4W-01 11 67766695 67766695 G C UNC93B1 Missense_Mutation p.S212C 0.13 tolerated(0.13) possibly_damaging(0.849) TCGA-ZF-AA4W-01 11 67790064 67790064 C A ALDH3B1 Silent p.A315A 0.16 TCGA-ZF-AA4W-01 11 7111367 7111367 G A RBMXL2 Missense_Mutation p.G339D 0.15 tolerated(0.13) benign(0.001) TCGA-ZF-AA4W-01 11 71146714 71146714 C T DHCR7 Missense_Mutation p.E379K 0.20 tolerated(0.21) possibly_damaging(0.61) TCGA-ZF-AA4W-01 11 764872 764872 C G TALDO1 3'UTR 0.15 TCGA-ZF-AA4W-01 11 7949320 7949320 A G OR10A6 Missense_Mutation p.M297T 0.16 deleterious(0) benign(0.254) TCGA-ZF-AA4W-01 11 83344295 83344295 G A DLG2 Silent p.S633S 0.13 TCGA-ZF-AA4W-01 11 89133467 89133467 G A NOX4 Silent p.V309V 0.06 TCGA-ZF-AA4W-01 11 92577489 92577489 C A FAT3 Silent p.R3652R 0.06 TCGA-ZF-AA4W-01 11 95598836 95598836 A G MTMR2 Missense_Mutation p.L64P 0.05 tolerated(0.07) possibly_damaging(0.62) TCGA-ZF-AA4W-01 11 9871715 9871715 C T SBF2 Silent p.E887E 0.19 TCGA-ZF-AA4W-01 12 101880233 101880234 - A SPIC Frame_Shift_Ins p.N146Kfs*50 0.11 TCGA-ZF-AA4W-01 12 108985879 108985879 T A TMEM119 Missense_Mutation p.Y94F 0.17 deleterious(0.01) probably_damaging(0.969) TCGA-ZF-AA4W-01 12 110383093 110383093 G T GIT2 Missense_Mutation p.S568Y 0.11 tolerated(0.74) benign(0.128) TCGA-ZF-AA4W-01 12 114832653 114832653 C T TBX5 Missense_Mutation p.V186M 0.19 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA4W-01 12 120966937 120966937 G A COQ5 Missense_Mutation p.A3V 0.28 tolerated_low_confidence(0.07) benign(0.037) TCGA-ZF-AA4W-01 12 121248685 121248685 A G SPPL3 Missense_Mutation p.Y10H 0.19 deleterious(0.03) benign(0.305) TCGA-ZF-AA4W-01 12 122995696 122995696 C G RSRC2 Missense_Mutation p.K255N 0.16 tolerated(0.06) unknown(0) TCGA-ZF-AA4W-01 12 132688236 132688236 C A GALNT9 Splice_Site 0.10 TCGA-ZF-AA4W-01 12 15800125 15800125 A T EPS8 Missense_Mutation p.S502T 0.18 tolerated(0.5) benign(0) TCGA-ZF-AA4W-01 12 25249925 25249925 C T LRMP Nonsense_Mutation p.Q230* 0.04 TCGA-ZF-AA4W-01 12 25254227 25254227 A T LRMP Missense_Mutation p.N286I 0.07 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 12 25705912 25705912 C G IFLTD1 5'UTR 0.17 TCGA-ZF-AA4W-01 12 27066991 27066992 - T ASUN Frame_Shift_Ins p.T497Nfs*7 0.13 TCGA-ZF-AA4W-01 12 2760755 2760755 C T CACNA1C Intron 0.21 TCGA-ZF-AA4W-01 12 2907949 2907949 C T FKBP4 Silent p.R157R 0.08 TCGA-ZF-AA4W-01 12 31566371 31566371 T C DENND5B Missense_Mutation p.K894E 0.09 deleterious(0.02) benign(0.347) TCGA-ZF-AA4W-01 12 38714286 38714286 A - ALG10B Frame_Shift_Del p.I233Ffs*15 0.08 TCGA-ZF-AA4W-01 12 48369344 48369345 - G COL2A1 Frame_Shift_Ins p.G1215Wfs*38 0.16 TCGA-ZF-AA4W-01 12 49432040 49432040 G - KMT2D Frame_Shift_Del p.N3034Mfs*37 0.13 TCGA-ZF-AA4W-01 12 52450304 52450304 C T NR4A1 Missense_Mutation p.R358W 0.13 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 12 53819354 53819354 C T AMHR2 Silent p.S206S 0.09 TCGA-ZF-AA4W-01 12 56495941 56495941 T - ERBB3 3'UTR 0.16 TCGA-ZF-AA4W-01 12 57552247 57552247 G C LRP1 Missense_Mutation p.D542H 0.06 probably_damaging(0.979) TCGA-ZF-AA4W-01 12 58145367 58145369 CCT - CDK4 In_Frame_Del p.G48del 0.12 TCGA-ZF-AA4W-01 12 60173277 60173277 C T SLC16A7 Silent p.S418S 0.06 TCGA-ZF-AA4W-01 12 67696168 67696168 T C CAND1 Missense_Mutation p.C356R 0.15 deleterious(0) probably_damaging(0.973) TCGA-ZF-AA4W-01 12 7086336 7086336 C A LPCAT3 Missense_Mutation p.R479M 0.24 deleterious(0) probably_damaging(0.971) TCGA-ZF-AA4W-01 12 72274297 72274297 C G TBC1D15 Missense_Mutation p.H85D 0.23 tolerated(0.71) benign(0.063) TCGA-ZF-AA4W-01 12 7280888 7280888 A G RBP5 Missense_Mutation p.V67A 0.25 deleterious(0) benign(0.273) TCGA-ZF-AA4W-01 12 79813093 79813093 C T SYT1 Intron 0.18 TCGA-ZF-AA4W-01 12 8689799 8689799 G C CLEC4E Missense_Mutation p.S95C 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA4W-01 12 95694441 95694441 G A VEZT Missense_Mutation p.E778K 0.18 tolerated_low_confidence(0.07) unknown(0) TCGA-ZF-AA4W-01 12 978034 978034 G T WNK1 Intron 0.14 TCGA-ZF-AA4W-01 12 98849558 98849558 G T SLC9A7P1 RNA 0.20 TCGA-ZF-AA4W-01 13 23903583 23903583 C T SACS 3'UTR 0.15 TCGA-ZF-AA4W-01 13 36006473 36006473 C T NBEA Missense_Mutation p.R2083C 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-ZF-AA4W-01 13 49075883 49075883 C A RCBTB2 Missense_Mutation p.K413N 0.09 deleterious(0) possibly_damaging(0.486) TCGA-ZF-AA4W-01 13 52524266 52524266 T C ATP7B Silent p.G869G 0.06 TCGA-ZF-AA4W-01 14 100996170 100996170 C G WDR25 Nonsense_Mutation p.S476* 0.08 TCGA-ZF-AA4W-01 14 102549577 102549577 C T HSP90AA1 Missense_Mutation p.E639K 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-AA4W-01 14 102550783 102550783 C G HSP90AA1 Missense_Mutation p.R489T 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-ZF-AA4W-01 14 102551683 102551683 C G HSP90AA1 Missense_Mutation p.E327D 0.14 tolerated_low_confidence(0.4) benign(0.083) TCGA-ZF-AA4W-01 14 103931903 103931903 C G MARK3 Missense_Mutation p.L184V 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-ZF-AA4W-01 14 106641659 106641659 G A IGHV1-18 Silent p.G85G 0.16 TCGA-ZF-AA4W-01 14 20586513 20586513 T C OR4K17 Silent p.I316I 0.10 TCGA-ZF-AA4W-01 14 20586533 20586533 A G OR4K17 Missense_Mutation p.K323R 0.10 tolerated(0.1) benign(0.05) TCGA-ZF-AA4W-01 14 22739860 22739860 C T TRAV38-1 Nonsense_Mutation p.R3* 0.16 TCGA-ZF-AA4W-01 14 25075805 25075805 G T GZMH 3'UTR 0.13 TCGA-ZF-AA4W-01 14 38679306 38679306 G A SSTR1 Missense_Mutation p.A238T 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-ZF-AA4W-01 14 39649941 39649941 C T PNN Missense_Mutation p.A343V 0.20 deleterious_low_confidence(0) benign(0.045) TCGA-ZF-AA4W-01 14 51095136 51095136 C T ATL1 Silent p.L503L 0.21 TCGA-ZF-AA4W-01 14 53619005 53619005 C T DDHD1 Missense_Mutation p.G271E 0.17 tolerated(0.69) benign(0.071) TCGA-ZF-AA4W-01 14 56763459 56763459 G A PELI2 Missense_Mutation p.A280T 0.34 tolerated(0.1) possibly_damaging(0.71) TCGA-ZF-AA4W-01 14 57072403 57072403 T C TMEM260 Splice_Site p.X212_splice 0.21 TCGA-ZF-AA4W-01 14 60581890 60581890 C T PCNXL4 Silent p.C122C 0.13 TCGA-ZF-AA4W-01 14 75130444 75130444 G A AREL1 Silent p.C817C 0.13 TCGA-ZF-AA4W-01 14 89307233 89307233 C A TTC8 Missense_Mutation p.P97H 0.09 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 14 89647108 89647108 C T FOXN3 Missense_Mutation p.R285Q 0.16 tolerated(0.96) benign(0.052) TCGA-ZF-AA4W-01 14 93483080 93483080 C T ITPK1 Missense_Mutation p.V63I 0.10 tolerated(0.38) benign(0.074) TCGA-ZF-AA4W-01 14 95057194 95057194 G A SERPINA5 Silent p.L333L 0.15 TCGA-ZF-AA4W-01 14 96180286 96180286 C T TCL1A Missense_Mutation p.E40K 0.17 tolerated(0.54) benign(0.016) TCGA-ZF-AA4W-01 15 100657184 100657184 T C ADAMTS17 Missense_Mutation p.S586G 0.19 deleterious(0.03) benign(0.42) TCGA-ZF-AA4W-01 15 20649500 20649500 G T HERC2P3 RNA 0.10 TCGA-ZF-AA4W-01 15 24923171 24923171 G T NPAP1 Missense_Mutation p.K719N 0.13 tolerated(0.23) benign(0.002) TCGA-ZF-AA4W-01 15 25470279 25470279 C A SNORD115-27 3'Flank 0.12 TCGA-ZF-AA4W-01 15 37184639 37184639 T C MEIS2 Missense_Mutation p.D390G 0.07 deleterious_low_confidence(0.01) benign(0.001) TCGA-ZF-AA4W-01 15 41988400 41988400 G T MGA Nonsense_Mutation p.E398* 0.13 TCGA-ZF-AA4W-01 15 41988414 41988414 G A MGA Silent p.V402V 0.16 TCGA-ZF-AA4W-01 15 41988424 41988424 G A MGA Missense_Mutation p.E406K 0.11 deleterious(0.03) benign(0.097) TCGA-ZF-AA4W-01 15 41988466 41988466 G C MGA Missense_Mutation p.D420H 0.21 deleterious(0) possibly_damaging(0.897) TCGA-ZF-AA4W-01 15 41988718 41988718 G A MGA Missense_Mutation p.E504K 0.15 tolerated(0.75) possibly_damaging(0.771) TCGA-ZF-AA4W-01 15 42136730 42136730 G T PLA2G4B Missense_Mutation p.G545V 0.18 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA4W-01 15 42470513 42470513 C A VPS39 Missense_Mutation p.S288I 0.19 deleterious(0.02) possibly_damaging(0.719) TCGA-ZF-AA4W-01 15 43044817 43044817 T - TTBK2 Frame_Shift_Del p.N876Ifs*10 0.18 TCGA-ZF-AA4W-01 15 43821166 43821166 C - MAP1A Frame_Shift_Del p.P2500Lfs*93 0.10 TCGA-ZF-AA4W-01 15 50489836 50489836 C A SLC27A2 Silent p.I206I 0.20 TCGA-ZF-AA4W-01 15 56924104 56924104 G A ZNF280D Silent p.H844H 0.18 TCGA-ZF-AA4W-01 15 59911493 59911493 C G GCNT3 Nonsense_Mutation p.Y352* 0.20 TCGA-ZF-AA4W-01 15 62283898 62283898 T - VPS13C Frame_Shift_Del p.K486Rfs*6 0.16 TCGA-ZF-AA4W-01 15 63030528 63030528 A G TLN2 Missense_Mutation p.D1228G 0.20 tolerated(0.54) benign(0.001) TCGA-ZF-AA4W-01 15 64966179 64966179 C T ZNF609 Missense_Mutation p.R376C 0.05 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 15 67649690 67649690 C T IQCH Silent p.F215F 0.18 TCGA-ZF-AA4W-01 15 67649700 67649700 C T IQCH Missense_Mutation p.R219W 0.17 deleterious(0.01) benign(0.292) TCGA-ZF-AA4W-01 15 67681233 67681234 - A IQCH Frame_Shift_Ins p.I510Nfs*14 0.24 TCGA-ZF-AA4W-01 15 73889661 73889661 G T NPTN Silent p.A47A 0.12 TCGA-ZF-AA4W-01 15 83424818 83424818 A G FSD2 3'UTR 0.09 TCGA-ZF-AA4W-01 15 86123700 86123700 G A AKAP13 Missense_Mutation p.A801T 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-ZF-AA4W-01 15 86198906 86198906 C A AKAP13 Missense_Mutation p.P1545T 0.18 deleterious(0) probably_damaging(0.988) TCGA-ZF-AA4W-01 15 89850742 89850742 A - FANCI Frame_Shift_Del p.N1193Ifs*6 0.19 TCGA-ZF-AA4W-01 15 90333727 90333727 C G ANPEP Silent p.V905V 0.10 TCGA-ZF-AA4W-01 15 94983445 94983445 T C MCTP2 Missense_Mutation p.I709T 0.17 deleterious(0) benign(0.143) TCGA-ZF-AA4W-01 16 11444624 11444624 G A RMI2 Missense_Mutation p.D141N 0.14 deleterious(0.01) probably_damaging(0.939) TCGA-ZF-AA4W-01 16 1411766 1411766 C G GNPTG Silent p.L67L 0.08 TCGA-ZF-AA4W-01 16 14975418 14975418 C G NOMO1 Missense_Mutation p.S968C 0.16 deleterious(0.01) possibly_damaging(0.706) TCGA-ZF-AA4W-01 16 1630804 1630804 C T IFT140 Missense_Mutation p.V494I 0.10 tolerated(0.57) benign(0.012) TCGA-ZF-AA4W-01 16 1691168 1691168 G C CRAMP1L Silent p.L269L 0.19 TCGA-ZF-AA4W-01 16 20326023 20326023 C T GP2 Missense_Mutation p.G504D 0.17 tolerated(0.16) benign(0.026) TCGA-ZF-AA4W-01 16 28926079 28926079 G A RABEP2 Missense_Mutation p.R153W 0.13 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 16 29979543 29979543 G A TMEM219 Missense_Mutation p.E185K 0.18 tolerated(0.3) probably_damaging(0.987) TCGA-ZF-AA4W-01 16 29997772 29997772 G C TAOK2 Missense_Mutation p.E727Q 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-ZF-AA4W-01 16 3021896 3021896 G A PAQR4 Missense_Mutation p.G257S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4W-01 16 30369984 30369984 C G TBC1D10B Missense_Mutation p.E599D 0.20 deleterious(0.05) benign(0.23) TCGA-ZF-AA4W-01 16 3282457 3282457 C T ZNF200 Missense_Mutation p.E144K 0.16 tolerated(0.57) benign(0.018) TCGA-ZF-AA4W-01 16 46617538 46617538 T C SHCBP1 Missense_Mutation p.K528R 0.31 tolerated(0.16) benign(0.009) TCGA-ZF-AA4W-01 16 5145470 5145470 G A FAM86A Missense_Mutation p.R48W 0.16 tolerated(0.12) benign(0.002) TCGA-ZF-AA4W-01 16 56443414 56443414 C T AMFR Silent p.V145V 0.16 TCGA-ZF-AA4W-01 16 57685486 57685486 C G GPR56 Missense_Mutation p.Q147E 0.20 tolerated(0.07) benign(0.027) TCGA-ZF-AA4W-01 16 618117 618117 T A NHLRC4 Missense_Mutation p.F24I 0.23 deleterious(0.03) benign(0.343) TCGA-ZF-AA4W-01 16 633636 633636 G A PIGQ 3'UTR 0.12 TCGA-ZF-AA4W-01 16 67914112 67914112 C T EDC4 Missense_Mutation p.P697L 0.13 tolerated(0.05) benign(0.084) TCGA-ZF-AA4W-01 16 67919746 67919746 G A NRN1L Silent p.E67E 0.09 TCGA-ZF-AA4W-01 16 69167477 69167477 A G CIRH1A Missense_Mutation p.T39A 0.08 tolerated(0.84) benign(0.004) TCGA-ZF-AA4W-01 16 70190472 70190472 C G PDPR Nonsense_Mutation p.S777* 0.36 TCGA-ZF-AA4W-01 16 76350421 76350421 G T CNTNAP4 Splice_Site p.X41_splice 0.26 TCGA-ZF-AA4W-01 16 87960473 87960473 C T CA5A Missense_Mutation p.S74N 0.17 deleterious(0.01) possibly_damaging(0.851) TCGA-ZF-AA4W-01 17 10541667 10541667 G A MYH3 Missense_Mutation p.A1141V 0.07 deleterious(0.03) benign(0.001) TCGA-ZF-AA4W-01 17 15207410 15207410 C A TEKT3 Missense_Mutation p.R439M 0.18 tolerated(0.06) benign(0.084) TCGA-ZF-AA4W-01 17 1636047 1636047 G A WDR81 Missense_Mutation p.A1471T 0.24 tolerated(0.62) benign(0.002) TCGA-ZF-AA4W-01 17 18862967 18862967 C T SLC5A10 Silent p.I113I 0.18 TCGA-ZF-AA4W-01 17 27613641 27613641 C T NUFIP2 Missense_Mutation p.M457I 0.14 tolerated(0.21) benign(0.001) TCGA-ZF-AA4W-01 17 30361941 30361941 C T LRRC37B Silent p.R663R 0.07 TCGA-ZF-AA4W-01 17 30648058 30648058 C T RHBDL3 Missense_Mutation p.A342V 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 17 34951594 34951594 G A DHRS11 Nonsense_Mutation p.W114* 0.08 TCGA-ZF-AA4W-01 17 35518832 35518832 T C ACACA Missense_Mutation p.R1738G 0.12 deleterious(0) possibly_damaging(0.528) TCGA-ZF-AA4W-01 17 37099048 37099048 C T FBXO47 Missense_Mutation p.V356I 0.11 tolerated(1) benign(0.001) TCGA-ZF-AA4W-01 17 38348913 38348913 C T RAPGEFL1 Missense_Mutation p.P365L 0.04 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 17 39969396 39969396 C T FKBP10 Missense_Mutation p.A37V 0.26 tolerated(0.38) benign(0.092) TCGA-ZF-AA4W-01 17 40460320 40460320 G A STAT5A Silent p.E677E 0.09 TCGA-ZF-AA4W-01 17 40843425 40843425 C T CNTNAP1 Missense_Mutation p.T747I 0.15 tolerated(0.08) possibly_damaging(0.759) TCGA-ZF-AA4W-01 17 4098278 4098278 G A ANKFY1 Missense_Mutation p.A498V 0.12 tolerated(0.34) benign(0.001) TCGA-ZF-AA4W-01 17 41245549 41245549 G A BRCA1 Nonsense_Mutation p.Q667* 0.20 TCGA-ZF-AA4W-01 17 41367889 41367889 A G TMEM106A Missense_Mutation p.I120V 0.16 tolerated(0.34) benign(0.002) TCGA-ZF-AA4W-01 17 41369856 41369856 C T TMEM106A 3'UTR 0.12 TCGA-ZF-AA4W-01 17 41958128 41958128 C T MPP2 Missense_Mutation p.V361M 0.13 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA4W-01 17 43314959 43314959 C T FMNL1 Missense_Mutation p.R283W 0.17 deleterious(0) unknown(0) TCGA-ZF-AA4W-01 17 44108963 44108963 C T KANSL1 Missense_Mutation p.R1066H 0.12 tolerated(0.09) probably_damaging(0.996) TCGA-ZF-AA4W-01 17 4805676 4805676 C A C17orf107 3'UTR 0.22 TCGA-ZF-AA4W-01 17 48683430 48683430 G T CACNA1G Intron 0.21 TCGA-ZF-AA4W-01 17 48695694 48695694 G A CACNA1G Missense_Mutation p.G1806D 0.12 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 17 57760814 57760814 G A CLTC Missense_Mutation p.E1370K 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 17 57915699 57915699 G C VMP1 Missense_Mutation p.E340Q 0.11 tolerated(0.15) benign(0.049) TCGA-ZF-AA4W-01 17 60663572 60663572 A G TLK2 Missense_Mutation p.K482R 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-ZF-AA4W-01 17 61950662 61950662 G T CSH2 Silent p.L16L 0.09 TCGA-ZF-AA4W-01 17 65021114 65021114 C T CACNG4 Missense_Mutation p.A148V 0.13 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA4W-01 17 70119709 70119709 A G SOX9 Silent p.P237P 0.14 TCGA-ZF-AA4W-01 17 72308166 72308166 G A DNAI2 Missense_Mutation p.E507K 0.09 deleterious(0) possibly_damaging(0.817) TCGA-ZF-AA4W-01 17 72436470 72436470 G - GPRC5C Frame_Shift_Del p.G231Afs*118 0.22 TCGA-ZF-AA4W-01 17 7579324 7579324 A T TP53 Silent p.S121S 0.30 TCGA-ZF-AA4W-01 17 7579325 7579325 G T TP53 Missense_Mutation p.S121Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4W-01 17 76167066 76167066 G A SYNGR2 Missense_Mutation p.A90T 0.21 deleterious(0.01) benign(0.009) TCGA-ZF-AA4W-01 17 78073343 78073343 G T CCDC40 Silent p.V1066V 0.12 TCGA-ZF-AA4W-01 17 79478100 79478100 G A ACTG1 Silent p.F279F 0.30 TCGA-ZF-AA4W-01 17 79634764 79634766 AGA - CCDC137 In_Frame_Del p.K50del 0.33 TCGA-ZF-AA4W-01 17 79655766 79655766 C G HGS Missense_Mutation p.I108M 0.42 tolerated(0.15) probably_damaging(0.993) TCGA-ZF-AA4W-01 17 79662979 79662979 G A HGS Missense_Mutation p.G448D 0.09 tolerated(0.24) benign(0.038) TCGA-ZF-AA4W-01 18 11851857 11851857 A T CHMP1B Missense_Mutation p.D116V 0.16 deleterious(0.01) probably_damaging(0.961) TCGA-ZF-AA4W-01 18 12028871 12028871 A G IMPA2 Silent p.A210A 0.07 TCGA-ZF-AA4W-01 18 2567049 2567049 G C METTL4 Missense_Mutation p.S56C 0.09 tolerated(0.18) benign(0.004) TCGA-ZF-AA4W-01 18 2762210 2762210 C A SMCHD1 Silent p.V1514V 0.17 TCGA-ZF-AA4W-01 18 3116332 3116332 C T MYOM1 Silent p.L1100L 0.14 TCGA-ZF-AA4W-01 18 33754520 33754520 A C ELP2 Silent p.A864A 0.30 TCGA-ZF-AA4W-01 18 55143752 55143752 C T ONECUT2 Missense_Mutation p.R438C 0.18 deleterious(0) probably_damaging(0.977) TCGA-ZF-AA4W-01 18 6966191 6966191 G T LAMA1 Silent p.T2335T 0.22 TCGA-ZF-AA4W-01 18 74639139 74639139 G A ZNF236 Splice_Site p.X1389_splice 0.15 TCGA-ZF-AA4W-01 18 77896105 77896105 C T ADNP2 Missense_Mutation p.R937C 0.30 deleterious(0) probably_damaging(0.941) TCGA-ZF-AA4W-01 19 10227826 10227826 G - EIF3G Frame_Shift_Del p.G114Dfs*15 0.21 TCGA-ZF-AA4W-01 19 13941839 13941839 T - ZSWIM4 Frame_Shift_Del p.L983Wfs*31 0.12 TCGA-ZF-AA4W-01 19 14069917 14069918 - C DCAF15 Frame_Shift_Ins p.E285* 0.15 TCGA-ZF-AA4W-01 19 15295171 15295171 C T NOTCH3 Missense_Mutation p.S834N 0.13 tolerated(0.44) possibly_damaging(0.456) TCGA-ZF-AA4W-01 19 16631604 16631604 C - C19orf44 3'UTR 0.21 TCGA-ZF-AA4W-01 19 16688415 16688415 G A MED26 Silent p.L76L 0.10 TCGA-ZF-AA4W-01 19 17411732 17411732 C G ABHD8 Missense_Mutation p.E232Q 0.18 deleterious(0.05) benign(0.345) TCGA-ZF-AA4W-01 19 18968215 18968215 C T UPF1 Silent p.F685F 0.14 TCGA-ZF-AA4W-01 19 21300016 21300016 G A ZNF714 Silent p.K182K 0.07 TCGA-ZF-AA4W-01 19 30936329 30936329 G A ZNF536 Silent p.L620L 0.16 TCGA-ZF-AA4W-01 19 32902171 32902171 A G DPY19L3 Missense_Mutation p.I44V 0.06 tolerated(0.24) benign(0.002) TCGA-ZF-AA4W-01 19 33355033 33355033 G C SLC7A9 Missense_Mutation p.I149M 0.18 tolerated(0.14) benign(0.426) TCGA-ZF-AA4W-01 19 36430655 36430655 C T LRFN3 Missense_Mutation p.R110C 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 19 36851383 36851383 C A ZFP14 Missense_Mutation p.K63N 0.16 deleterious(0) benign(0.066) TCGA-ZF-AA4W-01 19 37211037 37211037 C T ZNF567 Missense_Mutation p.H440Y 0.14 deleterious(0) probably_damaging(0.983) TCGA-ZF-AA4W-01 19 37382527 37382527 A G ZNF829 Missense_Mutation p.F470S 0.19 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4W-01 19 39421124 39421124 C T SARS2 Missense_Mutation p.D85N 0.16 tolerated(0.16) possibly_damaging(0.908) TCGA-ZF-AA4W-01 19 39421845 39421845 G C MRPS12 5'UTR 0.10 TCGA-ZF-AA4W-01 19 3964871 3964871 T C DAPK3 Missense_Mutation p.I61V 0.09 tolerated(0.19) possibly_damaging(0.516) TCGA-ZF-AA4W-01 19 40890038 40890038 G A HIPK4 Silent p.D158D 0.21 TCGA-ZF-AA4W-01 19 40900287 40900287 C T PRX Silent p.E1324E 0.21 TCGA-ZF-AA4W-01 19 41083167 41083167 G A SHKBP1 Nonsense_Mutation p.W39* 0.14 TCGA-ZF-AA4W-01 19 42392170 42392170 G A ARHGEF1 Missense_Mutation p.R21Q 0.16 tolerated(0.16) benign(0.226) TCGA-ZF-AA4W-01 19 44611954 44611954 G C ZNF224 Missense_Mutation p.K547N 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 19 45368628 45368628 G A PVRL2 Silent p.L63L 0.20 TCGA-ZF-AA4W-01 19 4538475 4538475 T C LRG1 Missense_Mutation p.N174S 0.05 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 19 46375625 46375625 C G FOXA3 Missense_Mutation p.S121C 0.07 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 19 4668610 4668610 A G C19orf10 Silent p.N74N 0.08 TCGA-ZF-AA4W-01 19 46971741 46971741 A G PNMAL1 3'UTR 0.18 TCGA-ZF-AA4W-01 19 48879560 48879560 G A SYNGR4 Missense_Mutation p.M230I 0.22 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-ZF-AA4W-01 19 49377381 49377381 C A PPP1R15A Silent p.P297P 0.19 TCGA-ZF-AA4W-01 19 49484799 49484799 C T GYS1 Missense_Mutation p.R386H 0.16 tolerated(0.21) probably_damaging(0.998) TCGA-ZF-AA4W-01 19 49489125 49489125 G C GYS1 Missense_Mutation p.F220L 0.14 tolerated(0.09) probably_damaging(0.987) TCGA-ZF-AA4W-01 19 4950909 4950909 T G UHRF1 RNA 0.27 TCGA-ZF-AA4W-01 19 50912914 50912914 G T POLD1 Missense_Mutation p.E715D 0.12 tolerated(0.07) benign(0.346) TCGA-ZF-AA4W-01 19 51728762 51728762 G C CD33 Missense_Mutation p.R109T 0.15 deleterious(0.01) possibly_damaging(0.555) TCGA-ZF-AA4W-01 19 52618226 52618226 A - ZNF616 Frame_Shift_Del p.S731Pfs*35 0.15 TCGA-ZF-AA4W-01 19 53058407 53058407 G C ZNF808 Missense_Mutation p.Q746H 0.17 tolerated(0.64) benign(0.044) TCGA-ZF-AA4W-01 19 53210069 53210069 C T ZNF611 Missense_Mutation p.G80D 0.05 tolerated(0.26) benign(0.007) TCGA-ZF-AA4W-01 19 53270675 53270675 C G ZNF600 Missense_Mutation p.E112Q 0.04 tolerated(0.1) possibly_damaging(0.558) TCGA-ZF-AA4W-01 19 53453802 53453802 C G ZNF816 Missense_Mutation p.R409T 0.09 tolerated(0.39) benign(0.012) TCGA-ZF-AA4W-01 19 53573345 53573345 C T ZNF160 Missense_Mutation p.D148N 0.13 tolerated(0.11) benign(0.03) TCGA-ZF-AA4W-01 19 54967285 54967285 G T LENG8 Missense_Mutation p.G389C 0.23 deleterious(0.01) possibly_damaging(0.902) TCGA-ZF-AA4W-01 19 5687833 5687833 G A HSD11B1L Intron 0.25 TCGA-ZF-AA4W-01 19 58982420 58982420 G A ZNF324 Silent p.R187R 0.15 TCGA-ZF-AA4W-01 19 6361912 6361912 G A CLPP Silent p.S77S 0.22 TCGA-ZF-AA4W-01 19 8564305 8564305 C A PRAM1 Missense_Mutation p.K129N 0.19 deleterious(0.04) possibly_damaging(0.839) TCGA-ZF-AA4W-01 19 9020804 9020804 A G MUC16 Missense_Mutation p.V12433A 0.23 benign(0.095) TCGA-ZF-AA4W-01 19 9406292 9406292 G C ZNF699 Missense_Mutation p.F596L 0.20 deleterious(0) possibly_damaging(0.786) TCGA-ZF-AA4W-01 19 9922216 9922216 C A FBXL12 Missense_Mutation p.D113Y 0.13 deleterious(0) probably_damaging(0.976) TCGA-ZF-AA4W-01 19 9964871 9964871 C A OLFM2 Silent p.G452G 0.24 TCGA-ZF-AA4W-01 1 10699863 10699863 C T CASZ1 Silent p.T1472T 0.27 TCGA-ZF-AA4W-01 1 111217049 111217049 G A KCNA3 Missense_Mutation p.T128M 0.12 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 1 11249509 11249509 A G ANGPTL7 5'UTR 0.19 TCGA-ZF-AA4W-01 1 114511080 114511080 C A HIPK1 Missense_Mutation p.L861M 0.13 tolerated(0.13) benign(0.007) TCGA-ZF-AA4W-01 1 117120153 117120153 G A IGSF3 Silent p.N1142N 0.22 TCGA-ZF-AA4W-01 1 118065449 118065449 A T MAN1A2 Missense_Mutation p.Y599F 0.08 deleterious(0) possibly_damaging(0.806) TCGA-ZF-AA4W-01 1 12726318 12726318 G A AADACL4 Missense_Mutation p.A266T 0.19 tolerated(0.23) possibly_damaging(0.595) TCGA-ZF-AA4W-01 1 146466002 146466002 T A NBPF12 Missense_Mutation p.F3293I 0.08 benign(0.163) TCGA-ZF-AA4W-01 1 151131418 151131418 G A TNFAIP8L2 Missense_Mutation p.S82N 0.24 deleterious(0.02) benign(0.003) TCGA-ZF-AA4W-01 1 151502552 151502552 G A CGN Silent p.A758A 0.17 TCGA-ZF-AA4W-01 1 151740664 151740664 T C OAZ3 Missense_Mutation p.F100S 0.13 deleterious(0) probably_damaging(0.977) TCGA-ZF-AA4W-01 1 152277373 152277373 C G FLG Missense_Mutation p.S3330T 0.17 unknown(0) TCGA-ZF-AA4W-01 1 153430437 153430437 C T S100A7 Missense_Mutation p.G51S 0.23 tolerated(0.14) possibly_damaging(0.645) TCGA-ZF-AA4W-01 1 155160660 155160660 C T MUC1 Silent p.L289L 0.24 TCGA-ZF-AA4W-01 1 157068581 157068581 G A ETV3L Missense_Mutation p.R135W 0.18 tolerated(0.15) benign(0.003) TCGA-ZF-AA4W-01 1 160109736 160109736 A G ATP1A2 Missense_Mutation p.D999G 0.18 deleterious(0.03) possibly_damaging(0.621) TCGA-ZF-AA4W-01 1 160808287 160808287 A G CD244 Missense_Mutation p.L268S 0.20 tolerated(0.06) possibly_damaging(0.685) TCGA-ZF-AA4W-01 1 161167820 161167820 G A ADAMTS4 Missense_Mutation p.L200F 0.06 tolerated(0.3) benign(0.036) TCGA-ZF-AA4W-01 1 17349116 17349116 C A SDHB Missense_Mutation p.R251M 0.24 deleterious(0.01) benign(0.061) TCGA-ZF-AA4W-01 1 177250038 177250038 C A BRINP2 Missense_Mutation p.L576I 0.18 tolerated(0.08) possibly_damaging(0.629) TCGA-ZF-AA4W-01 1 177911106 177911106 C T SEC16B Missense_Mutation p.E651K 0.13 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 1 178482238 178482238 C T TEX35 5'UTR 0.10 TCGA-ZF-AA4W-01 1 180897531 180897531 T - KIAA1614 Intron 0.17 TCGA-ZF-AA4W-01 1 181721334 181721334 C G CACNA1E Missense_Mutation p.L1263V 0.33 deleterious(0) probably_damaging(0.92) TCGA-ZF-AA4W-01 1 182827872 182827872 A G DHX9 Missense_Mutation p.E302G 0.07 tolerated(0.08) benign(0.004) TCGA-ZF-AA4W-01 1 185069351 185069351 C T RNF2 Missense_Mutation p.S310F 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 1 19175909 19175909 C T TAS1R2 Missense_Mutation p.V465I 0.15 tolerated(1) benign(0.006) TCGA-ZF-AA4W-01 1 19181066 19181066 C T TAS1R2 Missense_Mutation p.A300T 0.14 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 1 193029091 193029091 C T UCHL5 5'Flank 0.14 TCGA-ZF-AA4W-01 1 19439088 19439088 C G UBR4 Missense_Mutation p.D3911H 0.16 benign(0.352) TCGA-ZF-AA4W-01 1 196309547 196309547 C G KCNT2 Missense_Mutation p.Q569H 0.04 tolerated(0.21) benign(0.001) TCGA-ZF-AA4W-01 1 198505855 198505855 C G ATP6V1G3 Intron 0.09 TCGA-ZF-AA4W-01 1 202418189 202418189 C G PPP1R12B Silent p.L580L 0.08 TCGA-ZF-AA4W-01 1 204588349 204588349 C A LRRN2 Nonsense_Mutation p.E258* 0.22 TCGA-ZF-AA4W-01 1 206821938 206821938 G - DYRK3 Frame_Shift_Del p.G467Vfs*21 0.17 TCGA-ZF-AA4W-01 1 209783233 209783233 G C CAMK1G Silent p.P262P 0.16 TCGA-ZF-AA4W-01 1 209905860 209905860 G A HSD11B1 Silent p.K199K 0.05 TCGA-ZF-AA4W-01 1 21100060 21100060 T - HP1BP3 Frame_Shift_Del p.T132Qfs*13 0.36 TCGA-ZF-AA4W-01 1 216017670 216017670 C G USH2A Missense_Mutation p.R3075T 0.17 benign(0.007) TCGA-ZF-AA4W-01 1 21798100 21798100 T C NBPF3 Missense_Mutation p.L162P 0.07 deleterious(0) possibly_damaging(0.902) TCGA-ZF-AA4W-01 1 22178603 22178603 C - HSPG2 Frame_Shift_Del p.G2283Afs*43 0.11 TCGA-ZF-AA4W-01 1 22186673 22186673 C G HSPG2 Missense_Mutation p.E1671Q 0.23 benign(0.001) TCGA-ZF-AA4W-01 1 226253371 226253371 C T H3F3A Missense_Mutation p.A48V 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.561) TCGA-ZF-AA4W-01 1 226576366 226576366 T - PARP1 Frame_Shift_Del p.A237Pfs*2 0.12 TCGA-ZF-AA4W-01 1 233807150 233807150 G T KCNK1 Missense_Mutation p.E295D 0.09 tolerated(0.53) benign(0.022) TCGA-ZF-AA4W-01 1 234565225 234565225 G A TARBP1 Silent p.L936L 0.15 TCGA-ZF-AA4W-01 1 235324624 235324624 C A RBM34 5'UTR 0.13 TCGA-ZF-AA4W-01 1 24077835 24077835 C G TCEB3 Missense_Mutation p.S273C 0.10 deleterious(0.01) possibly_damaging(0.907) TCGA-ZF-AA4W-01 1 246490502 246490503 - T SMYD3 Frame_Shift_Ins p.V178Sfs*10 0.22 TCGA-ZF-AA4W-01 1 35873689 35873689 G C ZMYM4 Missense_Mutation p.E1293Q 0.04 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA4W-01 1 36563218 36563218 C T COL8A2 Silent p.T688T 0.23 TCGA-ZF-AA4W-01 1 36762331 36762332 - A THRAP3 Frame_Shift_Ins p.T757Nfs*6 0.15 TCGA-ZF-AA4W-01 1 44596230 44596230 C A KLF17 Missense_Mutation p.F324L 0.19 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4W-01 1 44878032 44878033 - C RNF220 Frame_Shift_Ins p.S91Ffs*25 0.18 TCGA-ZF-AA4W-01 1 45271311 45271311 C A PLK3 Silent p.R634R 0.09 TCGA-ZF-AA4W-01 1 45292664 45292664 G - PTCH2 Frame_Shift_Del p.L869Wfs*124 0.12 TCGA-ZF-AA4W-01 1 45810775 45810775 G A TESK2 Missense_Mutation p.R485C 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.776) TCGA-ZF-AA4W-01 1 52889675 52889675 C T ZCCHC11 Splice_Site p.X1624_splice 0.20 TCGA-ZF-AA4W-01 1 62713245 62713245 C A KANK4 Missense_Mutation p.D928Y 0.17 deleterious(0.01) benign(0.414) TCGA-ZF-AA4W-01 1 65301159 65301159 C A JAK1 Missense_Mutation p.G1097C 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 1 77094396 77094396 G - ST6GALNAC3 Frame_Shift_Del p.G276Vfs*20 0.13 TCGA-ZF-AA4W-01 1 79385987 79385988 - A ELTD1 Frame_Shift_Ins p.T448Yfs*7 0.17 TCGA-ZF-AA4W-01 1 8420263 8420263 C G RERE Missense_Mutation p.E1102Q 0.50 unknown(0) TCGA-ZF-AA4W-01 1 89522729 89522729 C G GBP1 Missense_Mutation p.Q321H 0.19 deleterious(0.01) benign(0.018) TCGA-ZF-AA4W-01 1 9009441 9009441 A G CA6 Missense_Mutation p.N67D 0.18 tolerated(0.24) benign(0.001) TCGA-ZF-AA4W-01 1 93683367 93683368 - A CCDC18 Frame_Shift_Ins p.A690Sfs*10 0.10 TCGA-ZF-AA4W-01 20 10639116 10639117 CT - JAG1 Frame_Shift_Del p.R231Sfs*10 0.12 TCGA-ZF-AA4W-01 20 13279672 13279672 A G ISM1 Missense_Mutation p.S321G 0.10 deleterious(0.01) benign(0.039) TCGA-ZF-AA4W-01 20 16030476 16030477 - G MACROD2 Frame_Shift_Ins p.A413Gfs*4 0.20 TCGA-ZF-AA4W-01 20 19673943 19673943 G A SLC24A3 Silent p.P455P 0.19 TCGA-ZF-AA4W-01 20 30358185 30358185 G C TPX2 Missense_Mutation p.Q132H 0.32 tolerated(0.15) benign(0.007) TCGA-ZF-AA4W-01 20 33589760 33589760 G A MYH7B Missense_Mutation p.A1938T 0.09 possibly_damaging(0.487) TCGA-ZF-AA4W-01 20 34219050 34219050 G A CPNE1 Nonsense_Mutation p.Q288* 0.14 TCGA-ZF-AA4W-01 20 34219208 34219208 G A CPNE1 Silent p.I266I 0.12 TCGA-ZF-AA4W-01 20 39795196 39795196 G A PLCG1 Missense_Mutation p.R694Q 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 20 42165058 42165058 C T L3MBTL1 Silent p.R689R 0.21 TCGA-ZF-AA4W-01 20 43139973 43139973 G A SERINC3 Silent p.I144I 0.15 TCGA-ZF-AA4W-01 20 44592115 44592115 G C ZNF335 Silent p.L510L 0.13 TCGA-ZF-AA4W-01 20 52198759 52198759 C T ZNF217 Missense_Mutation p.V203I 0.06 tolerated(0.05) probably_damaging(0.997) TCGA-ZF-AA4W-01 20 55209228 55209228 C T TFAP2C Missense_Mutation p.R276W 0.22 deleterious(0) probably_damaging(0.939) TCGA-ZF-AA4W-01 20 57485051 57485051 T C GNAS Silent p.D938D 0.12 TCGA-ZF-AA4W-01 20 57768114 57768114 C G ZNF831 Silent p.V680V 0.10 TCGA-ZF-AA4W-01 20 58558037 58558037 C G CDH26 Missense_Mutation p.F151L 0.14 deleterious(0.01) possibly_damaging(0.545) TCGA-ZF-AA4W-01 20 6096551 6096551 G A FERMT1 Missense_Mutation p.R98C 0.15 deleterious(0.02) benign(0.028) TCGA-ZF-AA4W-01 20 61538508 61538508 G A DIDO1 Silent p.C455C 0.12 TCGA-ZF-AA4W-01 20 62577212 62577212 C A UCKL1 Missense_Mutation p.K176N 0.17 deleterious(0) probably_damaging(0.919) TCGA-ZF-AA4W-01 20 744203 744203 C T SLC52A3 Missense_Mutation p.A338T 0.20 deleterious(0.05) possibly_damaging(0.491) TCGA-ZF-AA4W-01 20 9391690 9391690 C T PLCB4 Missense_Mutation p.A657V 0.25 tolerated(0.07) probably_damaging(0.922) TCGA-ZF-AA4W-01 21 16338311 16338311 C T NRIP1 Missense_Mutation p.D735N 0.19 deleterious(0.03) possibly_damaging(0.607) TCGA-ZF-AA4W-01 21 28327086 28327086 G A ADAMTS5 Silent p.H403H 0.06 TCGA-ZF-AA4W-01 21 37785282 37785282 C A CHAF1B Missense_Mutation p.P388T 0.15 deleterious(0.01) benign(0.213) TCGA-ZF-AA4W-01 21 45817735 45817735 G C TRPM2 Missense_Mutation p.E680Q 0.35 tolerated(0.1) benign(0.13) TCGA-ZF-AA4W-01 21 46000443 46000443 T C KRTAP10-5 Missense_Mutation p.T5A 0.13 deleterious(0.05) unknown(0) TCGA-ZF-AA4W-01 21 47977622 47977622 G C DIP2A Missense_Mutation p.E1252Q 0.16 deleterious(0) benign(0.086) TCGA-ZF-AA4W-01 22 18138452 18138452 T - BCL2L13 5'UTR 0.12 TCGA-ZF-AA4W-01 22 21062353 21062353 C T PI4KA Silent p.Q2097Q 0.20 TCGA-ZF-AA4W-01 22 21989445 21989446 - C CCDC116 Frame_Shift_Ins p.R367Pfs*25 0.15 TCGA-ZF-AA4W-01 22 23524036 23524036 C A BCR Missense_Mutation p.L297M 0.11 tolerated_low_confidence(0.32) benign(0) TCGA-ZF-AA4W-01 22 24095144 24095144 G T VPREB3 Silent p.A97A 0.16 TCGA-ZF-AA4W-01 22 24313771 24313771 C T DDT Missense_Mutation p.G109D 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 22 25150118 25150118 G C PIWIL3 Silent p.L280L 0.18 TCGA-ZF-AA4W-01 22 26117308 26117308 A - ADRBK2 Frame_Shift_Del p.K618Nfs*7 0.17 TCGA-ZF-AA4W-01 22 30035145 30035145 G A NF2 Missense_Mutation p.E103K 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-AA4W-01 22 30803541 30803541 G A SEC14L2 Silent p.K124K 0.11 TCGA-ZF-AA4W-01 22 37333546 37333546 C - CSF2RB Frame_Shift_Del p.S568Afs*130 0.21 TCGA-ZF-AA4W-01 22 38421637 38421637 C A POLR2F Silent p.A115A 0.16 TCGA-ZF-AA4W-01 22 43821217 43821217 T C MPPED1 Splice_Site p.X75_splice 0.13 TCGA-ZF-AA4W-01 22 45804756 45804756 G T SMC1B Missense_Mutation p.L45I 0.05 tolerated(0.92) possibly_damaging(0.843) TCGA-ZF-AA4W-01 2 106497939 106497939 G A NCK2 Missense_Mutation p.D128N 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 2 110922195 110922195 C G NPHP1 Missense_Mutation p.E281Q 0.22 deleterious(0.04) benign(0.005) TCGA-ZF-AA4W-01 2 128903486 128903486 T C UGGT1 Missense_Mutation p.I654T 0.22 tolerated(0.22) benign(0.002) TCGA-ZF-AA4W-01 2 135012105 135012105 C T MGAT5 Missense_Mutation p.S44F 0.14 tolerated(0.32) benign(0.367) TCGA-ZF-AA4W-01 2 152420152 152420152 G A NEB Missense_Mutation p.H6221Y 0.16 probably_damaging(0.955) TCGA-ZF-AA4W-01 2 152467029 152467029 C T NEB Splice_Site p.X4006_splice 0.14 TCGA-ZF-AA4W-01 2 152553691 152553691 C T NEB Missense_Mutation p.A481T 0.13 benign(0.019) TCGA-ZF-AA4W-01 2 160289269 160289269 T C BAZ2B Silent p.S633S 0.07 TCGA-ZF-AA4W-01 2 160289481 160289481 C A BAZ2B Missense_Mutation p.G563W 0.18 probably_damaging(0.965) TCGA-ZF-AA4W-01 2 160994700 160994700 G C ITGB6 Missense_Mutation p.S373C 0.13 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 2 162821630 162821630 G C SLC4A10 Missense_Mutation p.D1036H 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 2 165578680 165578680 G A COBLL1 Missense_Mutation p.P301S 0.15 tolerated(0.2) benign(0.05) TCGA-ZF-AA4W-01 2 166621536 166621536 A G GALNT3 Silent p.P182P 0.21 TCGA-ZF-AA4W-01 2 168067275 168067275 G A XIRP2 Missense_Mutation p.G198E 0.17 benign(0.086) TCGA-ZF-AA4W-01 2 169938339 169938339 A T DHRS9 Missense_Mutation p.D83V 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 2 172690501 172690501 G A SLC25A12 Nonsense_Mutation p.Q273* 0.19 TCGA-ZF-AA4W-01 2 179326069 179326069 C G DFNB59 3'UTR 0.24 TCGA-ZF-AA4W-01 2 179403819 179403819 T C TTN Missense_Mutation p.N32948S 0.14 TCGA-ZF-AA4W-01 2 179439394 179439394 T C TTN Missense_Mutation p.Y23822C 0.17 TCGA-ZF-AA4W-01 2 179621091 179621091 C T TTN Silent p.E3704E 0.22 TCGA-ZF-AA4W-01 2 187626804 187626804 C A FAM171B Silent p.R579R 0.17 TCGA-ZF-AA4W-01 2 197664327 197664327 C T GTF3C3 Silent p.G3G 0.06 TCGA-ZF-AA4W-01 2 20130270 20130270 G C WDR35 Missense_Mutation p.S1014C 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-ZF-AA4W-01 2 202260126 202260126 A C TRAK2 Missense_Mutation p.S271A 0.13 tolerated(1) benign(0.173) TCGA-ZF-AA4W-01 2 203160400 203160400 C T NOP58 Missense_Mutation p.S304F 0.14 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA4W-01 2 204304414 204304414 C T RAPH1 Missense_Mutation p.A1167T 0.09 unknown(0) TCGA-ZF-AA4W-01 2 20647415 20647415 G T RHOB Missense_Mutation p.Q63H 0.15 deleterious(0) probably_damaging(0.987) TCGA-ZF-AA4W-01 2 207172283 207172283 G A ZDBF2 Missense_Mutation p.V1011I 0.17 tolerated(0.07) benign(0.355) TCGA-ZF-AA4W-01 2 20939904 20939904 C T C2orf43 Missense_Mutation p.R177K 0.20 tolerated(0.92) benign(0.014) TCGA-ZF-AA4W-01 2 210557883 210557883 A T MAP2 Missense_Mutation p.K330M 0.12 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-ZF-AA4W-01 2 215845305 215845305 C T ABCA12 Missense_Mutation p.A1548T 0.18 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 2 216992312 216992312 A - XRCC5 Frame_Shift_Del p.E287Kfs*11 0.11 TCGA-ZF-AA4W-01 2 219350409 219350409 G A USP37 Missense_Mutation p.H550Y 0.17 deleterious(0.04) probably_damaging(1) TCGA-ZF-AA4W-01 2 224463439 224463439 C T SCG2 Missense_Mutation p.E188K 0.18 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4W-01 2 242681915 242681915 G A D2HGDH Missense_Mutation p.S139N 0.13 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 2 32824868 32824868 T - BIRC6 Frame_Shift_Del p.P4633Lfs*11 0.13 TCGA-ZF-AA4W-01 2 43934544 43934544 C T PLEKHH2 Missense_Mutation p.A609V 0.09 tolerated(0.05) possibly_damaging(0.691) TCGA-ZF-AA4W-01 2 44457544 44457544 A - PPM1B Intron 0.25 TCGA-ZF-AA4W-01 2 44559681 44559681 C T PREPL Missense_Mutation p.E424K 0.13 tolerated(0.29) benign(0.102) TCGA-ZF-AA4W-01 2 48026207 48026209 CTA - MSH6 In_Frame_Del p.T363del 0.16 TCGA-ZF-AA4W-01 2 48602108 48602108 C T FOXN2 Silent p.Y274Y 0.09 TCGA-ZF-AA4W-01 2 48956349 48956349 T C LHCGR Missense_Mutation p.D84G 0.15 tolerated(0.29) possibly_damaging(0.908) TCGA-ZF-AA4W-01 2 71047658 71047658 C G CLEC4F 5'UTR 0.31 TCGA-ZF-AA4W-01 2 71299818 71299818 A G NAGK Missense_Mutation p.N181D 0.09 deleterious(0.02) possibly_damaging(0.609) TCGA-ZF-AA4W-01 2 71801376 71801376 T C DYSF Missense_Mutation p.F1093L 0.18 tolerated(0.1) benign(0.007) TCGA-ZF-AA4W-01 2 71886083 71886083 G A DYSF Missense_Mutation p.A1611T 0.18 tolerated(0.47) benign(0.016) TCGA-ZF-AA4W-01 2 74742049 74742049 G A TLX2 Missense_Mutation p.R39H 0.16 tolerated(0.09) benign(0.074) TCGA-ZF-AA4W-01 2 77745833 77745833 T C LRRTM4 Missense_Mutation p.T388A 0.10 tolerated(0.24) benign(0.007) TCGA-ZF-AA4W-01 2 86389171 86389171 C T IMMT Missense_Mutation p.R275H 0.40 deleterious(0.03) benign(0.117) TCGA-ZF-AA4W-01 2 8934113 8934113 C A KIDINS220 Missense_Mutation p.G368V 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 3 112326054 112326054 A G CCDC80 Silent p.V825V 0.10 TCGA-ZF-AA4W-01 3 112335584 112335584 T - CCDC80 Frame_Shift_Del p.K765Sfs*19 0.12 TCGA-ZF-AA4W-01 3 113303575 113303575 G C SIDT1 Missense_Mutation p.R289P 0.27 deleterious(0) probably_damaging(0.974) TCGA-ZF-AA4W-01 3 114070607 114070607 T C ZBTB20 Silent p.V106V 0.08 TCGA-ZF-AA4W-01 3 119176954 119176954 G A TMEM39A Silent p.L83L 0.21 TCGA-ZF-AA4W-01 3 119912262 119912262 C G GPR156 Missense_Mutation p.K81N 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 3 127703061 127703061 G A KBTBD12 Missense_Mutation p.M604I 0.31 deleterious(0.01) benign(0.013) TCGA-ZF-AA4W-01 3 128712054 128712054 C T KIAA1257 Missense_Mutation p.D32N 0.23 tolerated(0.08) possibly_damaging(0.84) TCGA-ZF-AA4W-01 3 129182458 129182458 C T IFT122 Silent p.I186I 0.07 TCGA-ZF-AA4W-01 3 130718463 130718463 G T ATP2C1 Silent p.P897P 0.10 TCGA-ZF-AA4W-01 3 133647234 133647234 G C C3orf36 Silent p.L138L 0.13 TCGA-ZF-AA4W-01 3 137956206 137956206 T C ARMC8 Missense_Mutation p.V208A 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-ZF-AA4W-01 3 139257789 139257789 G A RBP1 Missense_Mutation p.A91V 0.05 tolerated(0.05) benign(0.415) TCGA-ZF-AA4W-01 3 142741354 142741354 C A U2SURP Missense_Mutation p.L290M 0.22 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 3 151056522 151056523 - A P2RY12 Frame_Shift_Ins p.V38Cfs*19 0.16 TCGA-ZF-AA4W-01 3 160122536 160122536 C A SMC4 Intron 0.08 TCGA-ZF-AA4W-01 3 16327924 16327924 G A OXNAD1 Missense_Mutation p.D87N 0.20 tolerated(0.66) benign(0.003) TCGA-ZF-AA4W-01 3 169896669 169896669 C T PHC3 Silent p.V24V 0.14 TCGA-ZF-AA4W-01 3 170108923 170108923 C G SKIL Missense_Mutation p.Q591E 0.12 tolerated(0.11) benign(0.1) TCGA-ZF-AA4W-01 3 182910829 182910829 T C MCF2L2 Missense_Mutation p.T992A 0.05 tolerated(0.56) benign(0.002) TCGA-ZF-AA4W-01 3 184910529 184910529 T - EHHADH Frame_Shift_Del p.R553Gfs*16 0.17 TCGA-ZF-AA4W-01 3 194182907 194182907 C T ATP13A3 Missense_Mutation p.E5K 0.33 tolerated(0.16) benign(0.012) TCGA-ZF-AA4W-01 3 194182949 194182949 C G ATP13A3 5'UTR 0.34 TCGA-ZF-AA4W-01 3 195516804 195516804 G T MUC4 Silent p.S549S 0.12 TCGA-ZF-AA4W-01 3 30691947 30691947 C G TGFBR2 Nonsense_Mutation p.S175* 0.13 TCGA-ZF-AA4W-01 3 33195406 33195406 A G SUSD5 Missense_Mutation p.S240P 0.18 tolerated(0.15) benign(0.002) TCGA-ZF-AA4W-01 3 39230987 39230987 C G XIRP1 5'UTR 0.32 TCGA-ZF-AA4W-01 3 47037250 47037250 G A NBEAL2 Missense_Mutation p.A649T 0.08 tolerated(0.25) benign(0.297) TCGA-ZF-AA4W-01 3 50390809 50390809 C G CYB561D2 Silent p.L101L 0.10 TCGA-ZF-AA4W-01 3 50391055 50391055 C T CYB561D2 Silent p.F183F 0.20 TCGA-ZF-AA4W-01 3 50391063 50391063 C A CYB561D2 Missense_Mutation p.S186Y 0.20 tolerated(0.11) benign(0.141) TCGA-ZF-AA4W-01 3 50391179 50391179 C A CYB561D2 3'UTR 0.14 TCGA-ZF-AA4W-01 3 52643360 52643360 C T PBRM1 Missense_Mutation p.E846K 0.07 tolerated(0.12) benign(0.273) TCGA-ZF-AA4W-01 3 71733849 71733849 C A EIF4E3 Missense_Mutation p.G220V 0.12 deleterious(0.03) benign(0.036) TCGA-ZF-AA4W-01 3 98072930 98072930 C - OR5K4 Frame_Shift_Del p.K80Rfs*3 0.23 TCGA-ZF-AA4W-01 3 99514792 99514792 G A COL8A1 Missense_Mutation p.E683K 0.21 tolerated(0.4) probably_damaging(0.946) TCGA-ZF-AA4W-01 4 100200705 100200705 T A ADH1A Missense_Mutation p.E327D 0.05 tolerated(1) benign(0.001) TCGA-ZF-AA4W-01 4 10447205 10447205 T A ZNF518B Missense_Mutation p.T250S 0.05 tolerated(0.38) benign(0.005) TCGA-ZF-AA4W-01 4 113506789 113506789 C G C4orf21 Missense_Mutation p.E1337Q 0.08 tolerated(0.1) possibly_damaging(0.452) TCGA-ZF-AA4W-01 4 113570754 113570754 A - LARP7 Frame_Shift_Del p.T412Qfs*5 0.26 TCGA-ZF-AA4W-01 4 126371549 126371549 C A FAT4 Nonsense_Mutation p.Y3126* 0.17 TCGA-ZF-AA4W-01 4 134084313 134084313 G T PCDH10 Missense_Mutation p.Q993H 0.17 deleterious(0.03) benign(0.264) TCGA-ZF-AA4W-01 4 1379728 1379728 G A UVSSA Silent p.Q703Q 0.15 TCGA-ZF-AA4W-01 4 145568068 145568068 C T HHIP Missense_Mutation p.R81W 0.08 deleterious(0) possibly_damaging(0.616) TCGA-ZF-AA4W-01 4 151829821 151829821 G C LRBA Silent p.L450L 0.16 TCGA-ZF-AA4W-01 4 156643193 156643193 C T GUCY1A3 Nonsense_Mutation p.R574* 0.10 TCGA-ZF-AA4W-01 4 156763401 156763401 G A ASIC5 Missense_Mutation p.H323Y 0.05 tolerated(0.78) benign(0.006) TCGA-ZF-AA4W-01 4 158281151 158281151 A C GRIA2 Missense_Mutation p.K716T 0.08 tolerated(0.26) probably_damaging(0.959) TCGA-ZF-AA4W-01 4 159789994 159789994 A - FNIP2 Frame_Shift_Del p.M738Wfs*5 0.21 TCGA-ZF-AA4W-01 4 169229287 169229287 G C DDX60 Nonsense_Mutation p.S45* 0.18 TCGA-ZF-AA4W-01 4 175897037 175897037 G T ADAM29 Missense_Mutation p.G121W 0.09 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA4W-01 4 178363583 178363583 C G AGA 5'UTR 0.10 TCGA-ZF-AA4W-01 4 184240517 184240517 G C CLDN22 3'UTR 0.29 TCGA-ZF-AA4W-01 4 184626154 184626154 C A TRAPPC11 Missense_Mutation p.P996T 0.08 tolerated(0.08) probably_damaging(0.966) TCGA-ZF-AA4W-01 4 185550579 185550579 G T CASP3 Silent p.A227A 0.14 TCGA-ZF-AA4W-01 4 185691610 185691610 T C ACSL1 Silent p.P312P 0.16 TCGA-ZF-AA4W-01 4 187004099 187004099 C G TLR3 Nonsense_Mutation p.S420* 0.17 TCGA-ZF-AA4W-01 4 187629483 187629483 T C FAT1 Missense_Mutation p.Y500C 0.07 probably_damaging(1) TCGA-ZF-AA4W-01 4 20544219 20544219 C G SLIT2 Missense_Mutation p.P749R 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 4 266334 266334 C G ZNF732 Missense_Mutation p.E104D 0.31 tolerated(0.32) possibly_damaging(0.899) TCGA-ZF-AA4W-01 4 39875912 39875912 A - PDS5A Frame_Shift_Del p.F758Lfs*8 0.22 TCGA-ZF-AA4W-01 4 55597512 55597512 G T KIT Missense_Mutation p.E720D 0.17 tolerated(0.87) probably_damaging(0.987) TCGA-ZF-AA4W-01 4 6621665 6621665 G A MAN2B2 Silent p.Q942Q 0.11 TCGA-ZF-AA4W-01 4 69434021 69434021 G T UGT2B17 Missense_Mutation p.S61Y 0.15 tolerated(0.06) possibly_damaging(0.623) TCGA-ZF-AA4W-01 4 85676452 85676453 - A WDFY3 Frame_Shift_Ins p.L1842Ffs*52 0.13 TCGA-ZF-AA4W-01 4 8613821 8613821 G A CPZ Missense_Mutation p.R432K 0.15 tolerated(0.11) possibly_damaging(0.877) TCGA-ZF-AA4W-01 4 96127845 96127845 G C UNC5C Missense_Mutation p.C612W 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 5 102343301 102343301 G A PAM Missense_Mutation p.V719M 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-ZF-AA4W-01 5 112177244 112177244 G A APC Missense_Mutation p.E1985K 0.19 benign(0.097) TCGA-ZF-AA4W-01 5 1331945 1331945 C G CLPTM1L Missense_Mutation p.K315N 0.14 deleterious(0) probably_damaging(0.926) TCGA-ZF-AA4W-01 5 140052115 140052115 G A DND1 Silent p.S173S 0.31 TCGA-ZF-AA4W-01 5 140209165 140209165 C T PCDHA6 Missense_Mutation p.R497W 0.14 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-ZF-AA4W-01 5 140552932 140552932 C T PCDHB7 Silent p.I172I 0.06 TCGA-ZF-AA4W-01 5 140574349 140574350 - G PCDHB10 Frame_Shift_Ins p.A744Rfs*2 0.12 TCGA-ZF-AA4W-01 5 140589863 140589863 G A PCDHB12 Missense_Mutation p.E462K 0.14 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-ZF-AA4W-01 5 145523014 145523014 C - LARS Frame_Shift_Del p.G613Vfs*18 0.13 TCGA-ZF-AA4W-01 5 156346536 156346536 C T TIMD4 Missense_Mutation p.D357N 0.13 deleterious(0.01) possibly_damaging(0.549) TCGA-ZF-AA4W-01 5 158705319 158705319 A G UBLCP1 Missense_Mutation p.D253G 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 5 159520823 159520823 G A PWWP2A Silent p.I278I 0.10 TCGA-ZF-AA4W-01 5 160016602 160016602 T C ATP10B Silent p.T1249T 0.19 TCGA-ZF-AA4W-01 5 160721218 160721218 C T GABRB2 Missense_Mutation p.R470H 0.10 deleterious(0.03) probably_damaging(0.989) TCGA-ZF-AA4W-01 5 160757907 160757907 G A GABRB2 Missense_Mutation p.R354C 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-ZF-AA4W-01 5 162909657 162909657 G A HMMR Silent p.A465A 0.10 TCGA-ZF-AA4W-01 5 169689861 169689861 G C LCP2 Missense_Mutation p.S268W 0.12 tolerated(0.19) possibly_damaging(0.528) TCGA-ZF-AA4W-01 5 175956034 175956034 C G RNF44 Missense_Mutation p.E432Q 0.16 deleterious(0.02) benign(0.213) TCGA-ZF-AA4W-01 5 176026205 176026205 G C GPRIN1 Missense_Mutation p.L211V 0.18 tolerated(0.53) benign(0.085) TCGA-ZF-AA4W-01 5 176722266 176722266 C T NSD1 Missense_Mutation p.R2633W 0.10 deleterious_low_confidence(0) benign(0.005) TCGA-ZF-AA4W-01 5 177156509 177156509 C T FAM153A Missense_Mutation p.E227K 0.17 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-ZF-AA4W-01 5 32712275 32712275 C A NPR3 Silent p.I131I 0.16 TCGA-ZF-AA4W-01 5 34954775 34954775 G A DNAJC21 Missense_Mutation p.A563T 0.16 tolerated(0.26) benign(0.22) TCGA-ZF-AA4W-01 5 5239281 5239281 T A ADAMTS16 Missense_Mutation p.N724K 0.12 tolerated(0.07) benign(0.007) TCGA-ZF-AA4W-01 5 54593119 54593119 T - DHX29 Frame_Shift_Del p.K123Nfs*23 0.25 TCGA-ZF-AA4W-01 5 5462936 5462936 T C KIAA0947 Silent p.T1163T 0.15 TCGA-ZF-AA4W-01 5 56777857 56777857 C A ACTBL2 Missense_Mutation p.Q226H 0.11 deleterious_low_confidence(0.01) benign(0.016) TCGA-ZF-AA4W-01 5 60455819 60455819 T - SMIM15 Frame_Shift_Del p.K60Nfs*12 0.12 TCGA-ZF-AA4W-01 5 61770244 61770245 - T IPO11 Frame_Shift_Ins p.L279Ffs*6 0.10 TCGA-ZF-AA4W-01 5 68682081 68682081 G T RAD17 Missense_Mutation p.R269M 0.10 deleterious(0) probably_damaging(0.918) TCGA-ZF-AA4W-01 5 70849104 70849104 G A BDP1 Missense_Mutation p.R2386H 0.12 tolerated(0.08) benign(0) TCGA-ZF-AA4W-01 5 73181827 73181827 A - ARHGEF28 Frame_Shift_Del p.N1071Mfs*10 0.28 TCGA-ZF-AA4W-01 5 79732690 79732690 C T ZFYVE16 Silent p.C62C 0.08 TCGA-ZF-AA4W-01 5 90136680 90136680 G A GPR98 Missense_Mutation p.D5633N 0.12 possibly_damaging(0.811) TCGA-ZF-AA4W-01 5 93856216 93856216 T A KIAA0825 Missense_Mutation p.N236I 0.11 deleterious(0) probably_damaging(0.961) TCGA-ZF-AA4W-01 5 98206408 98206409 - T CHD1 Frame_Shift_Ins p.E1321Rfs*17 0.13 TCGA-ZF-AA4W-01 6 102134098 102134098 T C GRIK2 Missense_Mutation p.V274A 0.27 tolerated(0.06) probably_damaging(0.945) TCGA-ZF-AA4W-01 6 110301379 110301379 G A GPR6 Missense_Mutation p.R355H 0.12 deleterious(0.02) possibly_damaging(0.7) TCGA-ZF-AA4W-01 6 111697648 111697648 G C REV3L Nonsense_Mutation p.S637* 0.17 TCGA-ZF-AA4W-01 6 112025286 112025286 C T FYN Missense_Mutation p.G155S 0.14 tolerated(0.91) probably_damaging(1) TCGA-ZF-AA4W-01 6 117130529 117130529 G C GPRC6A Nonsense_Mutation p.S149* 0.18 TCGA-ZF-AA4W-01 6 117662378 117662378 G A ROS1 Missense_Mutation p.P1667S 0.23 tolerated(0.06) probably_damaging(0.938) TCGA-ZF-AA4W-01 6 123892070 123892070 G A TRDN Missense_Mutation p.S77L 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-AA4W-01 6 131925327 131925327 C A MED23 Nonsense_Mutation p.G583* 0.11 TCGA-ZF-AA4W-01 6 132859631 132859631 A G TAAR9 Missense_Mutation p.N68S 0.13 deleterious(0.02) benign(0.342) TCGA-ZF-AA4W-01 6 138200359 138200359 C G TNFAIP3 Missense_Mutation p.Q593E 0.17 tolerated(0.32) benign(0.05) TCGA-ZF-AA4W-01 6 152201851 152201851 G C ESR1 Missense_Mutation p.K235N 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 6 158549208 158549208 C T SERAC1 Missense_Mutation p.R316K 0.12 tolerated(0.13) possibly_damaging(0.719) TCGA-ZF-AA4W-01 6 158902258 158902258 C T TULP4 Missense_Mutation p.R475W 0.18 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4W-01 6 165703464 165703464 C G C6orf118 Missense_Mutation p.E405Q 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 6 165806233 165806233 G A PDE10A Missense_Mutation p.R520W 0.18 deleterious(0.02) benign(0.026) TCGA-ZF-AA4W-01 6 167549607 167549608 - T CCR6 5'UTR 0.14 TCGA-ZF-AA4W-01 6 170592091 170592091 G A DLL1 Silent p.C717C 0.13 TCGA-ZF-AA4W-01 6 18122466 18122466 C - NHLRC1 Frame_Shift_Del p.T125Pfs*107 0.11 TCGA-ZF-AA4W-01 6 26104345 26104345 G T HIST1H4C Missense_Mutation p.G57V 0.16 deleterious(0.01) benign(0.222) TCGA-ZF-AA4W-01 6 26393474 26393474 A C BTN2A2 3'UTR 0.12 TCGA-ZF-AA4W-01 6 28227933 28227933 G C NKAPL Missense_Mutation p.E262Q 0.23 deleterious(0.02) possibly_damaging(0.667) TCGA-ZF-AA4W-01 6 29274592 29274592 C G OR14J1 Silent p.L42L 0.23 TCGA-ZF-AA4W-01 6 30570103 30570103 C T PPP1R10 Missense_Mutation p.G775S 0.16 tolerated_low_confidence(0.4) unknown(0) TCGA-ZF-AA4W-01 6 30652939 30652939 C A PPP1R18 Missense_Mutation p.G286V 0.18 tolerated_low_confidence(0.08) benign(0.155) TCGA-ZF-AA4W-01 6 30657966 30657967 - G NRM Frame_Shift_Ins p.L63Pfs*21 0.15 TCGA-ZF-AA4W-01 6 30671965 30671965 G - MDC1 Frame_Shift_Del p.T1666Qfs*10 0.19 TCGA-ZF-AA4W-01 6 30675470 30675470 G T MDC1 Silent p.A962A 0.16 TCGA-ZF-AA4W-01 6 31929329 31929329 G A SKIV2L Silent p.A265A 0.17 TCGA-ZF-AA4W-01 6 33694614 33694614 G T IP6K3 Silent p.T161T 0.10 TCGA-ZF-AA4W-01 6 34100906 34100906 A G GRM4 Missense_Mutation p.V123A 0.17 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4W-01 6 36922641 36922641 G C PI16 Missense_Mutation p.L35F 0.15 tolerated(0.72) benign(0.298) TCGA-ZF-AA4W-01 6 38770982 38770982 C G DNAH8 Missense_Mutation p.L760V 0.18 benign(0.115) TCGA-ZF-AA4W-01 6 41652546 41652546 C T TFEB Missense_Mutation p.E408K 0.21 deleterious(0.04) possibly_damaging(0.716) TCGA-ZF-AA4W-01 6 44272425 44272425 C - AARS2 Frame_Shift_Del p.G570Afs*21 0.18 TCGA-ZF-AA4W-01 6 44371655 44371656 - A CDC5L Frame_Shift_Ins p.P220Afs*7 0.19 TCGA-ZF-AA4W-01 6 54806528 54806528 C T FAM83B Missense_Mutation p.S920F 0.09 tolerated(0.16) benign(0.17) TCGA-ZF-AA4W-01 6 55147195 55147195 C G HCRTR2 Silent p.L426L 0.09 TCGA-ZF-AA4W-01 6 70098687 70098687 G T BAI3 Missense_Mutation p.E1491D 0.14 tolerated(0.62) benign(0.001) TCGA-ZF-AA4W-01 6 7230630 7230630 T C RREB1 Silent p.R766R 0.41 TCGA-ZF-AA4W-01 6 74116130 74116130 G C DDX43 Missense_Mutation p.G284A 0.24 tolerated(0.12) benign(0.204) TCGA-ZF-AA4W-01 6 83838630 83838630 C A DOPEY1 Missense_Mutation p.P582T 0.11 tolerated(0.13) benign(0.001) TCGA-ZF-AA4W-01 6 97626452 97626452 T C MMS22L Missense_Mutation p.Y849C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-AA4W-01 7 100773885 100773885 T C SERPINE1 Missense_Mutation p.V152A 0.06 tolerated(0.55) benign(0.003) TCGA-ZF-AA4W-01 7 100839278 100839278 C T MOGAT3 Silent p.E325E 0.22 TCGA-ZF-AA4W-01 7 107355883 107355883 G C SLC26A4 Missense_Mutation p.A779P 0.12 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-ZF-AA4W-01 7 113518193 113518193 G C PPP1R3A Nonsense_Mutation p.S985* 0.20 TCGA-ZF-AA4W-01 7 115892473 115892473 C T TES Silent p.Y340Y 0.21 TCGA-ZF-AA4W-01 7 127670496 127670496 G C LRRC4 Silent p.L66L 0.15 TCGA-ZF-AA4W-01 7 129028913 129028913 T C AHCYL2 Silent p.D164D 0.17 TCGA-ZF-AA4W-01 7 133906656 133906656 A - LRGUK Frame_Shift_Del p.T659Hfs*19 0.19 TCGA-ZF-AA4W-01 7 138764842 138764842 C A ZC3HAV1 Missense_Mutation p.R282M 0.23 tolerated(0.07) probably_damaging(0.962) TCGA-ZF-AA4W-01 7 142658955 142658955 C T KEL Missense_Mutation p.G3D 0.21 deleterious_low_confidence(0.03) benign(0.053) TCGA-ZF-AA4W-01 7 143000971 143000971 G A CASP2 Silent p.P354P 0.22 TCGA-ZF-AA4W-01 7 150070038 150070038 G A REPIN1 3'Flank 0.14 TCGA-ZF-AA4W-01 7 150730953 150730953 C A ABCB8 Silent p.L119L 0.11 TCGA-ZF-AA4W-01 7 157370773 157370773 G A PTPRN2 Silent p.G852G 0.28 TCGA-ZF-AA4W-01 7 20824294 20824294 C T SP8 Missense_Mutation p.C381Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4W-01 7 28848874 28848874 G A CREB5 Missense_Mutation p.R366Q 0.16 deleterious(0) unknown(0) TCGA-ZF-AA4W-01 7 30197143 30197143 G C MTURN Missense_Mutation p.Q125H 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ZF-AA4W-01 7 33545228 33545228 C G BBS9 Missense_Mutation p.L757V 0.25 tolerated(0.38) possibly_damaging(0.712) TCGA-ZF-AA4W-01 7 34192804 34192804 C T BMPER Silent p.C659C 0.21 TCGA-ZF-AA4W-01 7 44578734 44578734 C A NPC1L1 Missense_Mutation p.R421M 0.16 tolerated(0.13) benign(0.007) TCGA-ZF-AA4W-01 7 47408207 47408207 C T TNS3 Missense_Mutation p.G679D 0.12 tolerated(1) benign(0.003) TCGA-ZF-AA4W-01 7 4825973 4825973 G A AP5Z1 Missense_Mutation p.E409K 0.22 deleterious(0) probably_damaging(0.947) TCGA-ZF-AA4W-01 7 48314884 48314884 C G ABCA13 Nonsense_Mutation p.S1874* 0.10 TCGA-ZF-AA4W-01 7 51111333 51111333 G A COBL Silent p.L385L 0.17 TCGA-ZF-AA4W-01 7 56079471 56079471 C G PSPH Missense_Mutation p.G221A 0.08 tolerated(0.52) benign(0.003) TCGA-ZF-AA4W-01 7 5780604 5780604 C A RNF216 Silent p.T348T 0.14 TCGA-ZF-AA4W-01 7 86394431 86394431 G C GRM3 5'UTR 0.11 TCGA-ZF-AA4W-01 7 91503744 91503744 C T MTERF Missense_Mutation p.A122T 0.14 deleterious(0) probably_damaging(0.971) TCGA-ZF-AA4W-01 7 91936755 91936755 C T ANKIB1 Nonsense_Mutation p.Q91* 0.19 TCGA-ZF-AA4W-01 7 99490167 99490167 A G TRIM4 Silent p.V374V 0.21 TCGA-ZF-AA4W-01 8 105441885 105441885 C A DPYS Missense_Mutation p.D280Y 0.07 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 8 107718944 107718944 G C OXR1 Missense_Mutation p.E400Q 0.11 tolerated(0.44) benign(0.282) TCGA-ZF-AA4W-01 8 124195347 124195347 C A FAM83A Missense_Mutation p.T84N 0.05 tolerated(0.36) benign(0.079) TCGA-ZF-AA4W-01 8 125575163 125575163 A G MTSS1 Missense_Mutation p.Y299H 0.19 tolerated(0.42) probably_damaging(0.987) TCGA-ZF-AA4W-01 8 12946095 12946095 T C DLC1 Missense_Mutation p.D1398G 0.24 deleterious(0.02) probably_damaging(0.917) TCGA-ZF-AA4W-01 8 132982802 132982802 G - EFR3A Frame_Shift_Del p.G359Dfs*3 0.18 TCGA-ZF-AA4W-01 8 132991142 132991142 T G EFR3A Missense_Mutation p.S459A 0.15 tolerated(0.27) benign(0.004) TCGA-ZF-AA4W-01 8 141559307 141559307 C T AGO2 Silent p.A498A 0.12 TCGA-ZF-AA4W-01 8 144654243 144654243 G A MROH6 Missense_Mutation p.S136F 0.15 deleterious(0) possibly_damaging(0.898) TCGA-ZF-AA4W-01 8 144671271 144671271 G A EEF1D Silent p.C327C 0.27 TCGA-ZF-AA4W-01 8 144941425 144941425 C T EPPK1 Silent p.E1999E 0.15 TCGA-ZF-AA4W-01 8 145737616 145737616 G A RECQL4 Silent p.D1049D 0.22 TCGA-ZF-AA4W-01 8 17143899 17143899 C T VPS37A Missense_Mutation p.A386V 0.18 tolerated(0.61) benign(0.001) TCGA-ZF-AA4W-01 8 22210508 22210508 C G PIWIL2 Missense_Mutation p.R814G 0.15 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 8 23186033 23186033 G A LOXL2 Missense_Mutation p.R338C 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 8 27324745 27324745 C T CHRNA2 Splice_Site p.X150_splice 0.12 TCGA-ZF-AA4W-01 8 35584003 35584003 G A UNC5D Missense_Mutation p.G546D 0.05 deleterious(0) possibly_damaging(0.745) TCGA-ZF-AA4W-01 8 39780080 39780080 C A IDO1 Missense_Mutation p.D149E 0.28 tolerated(0.39) benign(0.16) TCGA-ZF-AA4W-01 8 48875394 48875394 C A MCM4 Missense_Mutation p.P191H 0.16 deleterious(0) probably_damaging(0.933) TCGA-ZF-AA4W-01 8 54708340 54708341 - A ATP6V1H Frame_Shift_Ins p.S246Ffs*13 0.11 TCGA-ZF-AA4W-01 8 6302795 6302795 G A MCPH1 Missense_Mutation p.A518T 0.25 tolerated(0.78) benign(0.001) TCGA-ZF-AA4W-01 8 82439285 82439285 C T FABP12 Silent p.T106T 0.16 TCGA-ZF-AA4W-01 8 87498829 87498829 C T RMDN1 Missense_Mutation p.D127N 0.14 deleterious(0.04) possibly_damaging(0.614) TCGA-ZF-AA4W-01 8 95683790 95683790 G A ESRP1 Missense_Mutation p.R448H 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 8 99045363 99045363 T C MATN2 Missense_Mutation p.L892S 0.35 tolerated_low_confidence(0.56) benign(0) TCGA-ZF-AA4W-01 9 103015222 103015222 G A INVS Missense_Mutation p.G423E 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-ZF-AA4W-01 9 104079654 104079654 G A LPPR1 Missense_Mutation p.C274Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 9 106887295 106887295 G A SMC2 Missense_Mutation p.R787K 0.13 tolerated(0.13) benign(0.084) TCGA-ZF-AA4W-01 9 111618046 111618047 - T ACTL7B Frame_Shift_Ins p.D55Efs*47 0.12 TCGA-ZF-AA4W-01 9 116060496 116060496 G A RNF183 5'UTR 0.18 TCGA-ZF-AA4W-01 9 117099573 117099573 C T AKNA Missense_Mutation p.A1361T 0.32 tolerated(0.08) benign(0.01) TCGA-ZF-AA4W-01 9 124751555 124751555 C T TTLL11 Silent p.T486T 0.17 TCGA-ZF-AA4W-01 9 127119181 127119181 T C PSMB7 Missense_Mutation p.K195R 0.10 tolerated(0.34) benign(0.159) TCGA-ZF-AA4W-01 9 131010949 131010949 C G DNM1 Missense_Mutation p.L665V 0.04 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 9 131038546 131038546 C T SWI5 Missense_Mutation p.S41F 0.41 deleterious_low_confidence(0.03) benign(0.032) TCGA-ZF-AA4W-01 9 132084516 132084516 G C C9orf106 RNA 0.09 TCGA-ZF-AA4W-01 9 132584978 132584978 T - TOR1A Frame_Shift_Del p.N109Ifs*16 0.08 TCGA-ZF-AA4W-01 9 132641854 132641854 C - USP20 Frame_Shift_Del p.I843Lfs*17 0.09 TCGA-ZF-AA4W-01 9 132686250 132686250 G C FNBP1 Missense_Mutation p.A348G 0.29 tolerated(0.31) benign(0.103) TCGA-ZF-AA4W-01 9 133542071 133542071 C T PRDM12 Silent p.L100L 0.10 TCGA-ZF-AA4W-01 9 135374932 135374932 A G C9orf171 Missense_Mutation p.M193V 0.34 tolerated(0.41) benign(0) TCGA-ZF-AA4W-01 9 136918507 136918507 C T BRD3 Silent p.K31K 0.36 TCGA-ZF-AA4W-01 9 137300040 137300040 C - RXRA Frame_Shift_Del p.L111Wfs*57 0.22 TCGA-ZF-AA4W-01 9 139310759 139310759 G A PMPCA Missense_Mutation p.M183I 0.11 tolerated(0.31) benign(0.027) TCGA-ZF-AA4W-01 9 139756656 139756656 G A EDF1 3'UTR 0.13 TCGA-ZF-AA4W-01 9 21971018 21971018 G T CDKN2A Missense_Mutation p.P114T 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 9 38395978 38395978 G A ALDH1B1 Missense_Mutation p.R78Q 0.19 tolerated(0.11) benign(0) TCGA-ZF-AA4W-01 9 5361173 5361173 T - PLGRKT Frame_Shift_Del p.K76Rfs*12 0.25 TCGA-ZF-AA4W-01 9 5968294 5968294 C A KIAA2026 Missense_Mutation p.G646V 0.22 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4W-01 9 71155530 71155530 A G TMEM252 Silent p.T67T 0.17 TCGA-ZF-AA4W-01 9 712373 712373 C T KANK1 Missense_Mutation p.T536M 0.26 deleterious(0) benign(0.011) TCGA-ZF-AA4W-01 9 712749 712749 C T KANK1 Silent p.A661A 0.18 TCGA-ZF-AA4W-01 9 71395699 71395699 G A FAM122A Missense_Mutation p.E207K 0.17 deleterious(0) probably_damaging(0.925) TCGA-ZF-AA4W-01 9 71687607 71687607 G A FXN Missense_Mutation p.A188T 0.10 tolerated(0.92) benign(0.001) TCGA-ZF-AA4W-01 9 71831288 71831288 G A TJP2 Missense_Mutation p.G81R 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 9 73240177 73240177 C T TRPM3 Missense_Mutation p.G568E 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-ZF-AA4W-01 9 74365248 74365248 G C TMEM2 Silent p.L14L 0.13 TCGA-ZF-AA4W-01 9 79973272 79973272 G T VPS13A Splice_Site p.X2652_splice 0.13 TCGA-ZF-AA4W-01 9 87317107 87317107 C A NTRK2 Silent p.I82I 0.09 TCGA-ZF-AA4W-01 9 90396120 90396120 C T CTSL3P RNA 0.11 TCGA-ZF-AA4W-01 9 99266040 99266040 G A CDC14B Missense_Mutation p.R498C 0.08 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-ZF-AA4W-01 X 100911930 100911930 G T ARMCX2 Silent p.T215T 0.24 TCGA-ZF-AA4W-01 X 10417614 10417614 G - MID1 Frame_Shift_Del p.H600Tfs*22 0.28 TCGA-ZF-AA4W-01 X 117959123 117959123 C A ZCCHC12 5'UTR 0.28 TCGA-ZF-AA4W-01 X 119669705 119669706 AC - CUL4B Frame_Shift_Del p.L732Kfs*5 0.24 TCGA-ZF-AA4W-01 X 128622975 128622975 G C SMARCA1 Missense_Mutation p.S679C 0.10 deleterious(0.03) benign(0.03) TCGA-ZF-AA4W-01 X 1401600 1401600 C T CSF2RA Missense_Mutation p.L2F 0.08 tolerated_low_confidence(0.71) unknown(0) TCGA-ZF-AA4W-01 X 150349125 150349125 C T GPR50 Missense_Mutation p.A357V 0.20 tolerated(0.12) benign(0.039) TCGA-ZF-AA4W-01 X 154157487 154157487 A G F8 Silent p.P1526P 0.32 TCGA-ZF-AA4W-01 X 19371236 19371236 C T PDHA1 Missense_Mutation p.S190L 0.21 deleterious(0) probably_damaging(1) TCGA-ZF-AA4W-01 X 48382311 48382311 G T EBP Missense_Mutation p.G51V 0.23 deleterious(0) possibly_damaging(0.853) TCGA-ZF-AA4W-01 X 51486903 51486903 C T GSPT2 Missense_Mutation p.P61S 0.28 deleterious_low_confidence(0) probably_damaging(0.911) TCGA-ZF-AA4W-01 X 69253281 69253281 G A EDA Missense_Mutation p.R276H 0.26 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-ZF-AA4W-01 X 79971671 79971671 A C BRWD3 Silent p.S770S 0.39 TCGA-ZF-AA4W-01 X 89177637 89177637 G A TGIF2LX Missense_Mutation p.G185R 0.30 tolerated(0.63) benign(0.012) TCGA-ZF-AA4W-01 X 95993700 95993700 A G DIAPH2 Missense_Mutation p.Y94C 0.28 tolerated(0.18) unknown(0) TCGA-ZF-AA4W-01 X 95993712 95993712 C G DIAPH2 Missense_Mutation p.S98C 0.23 tolerated(0.16) unknown(0) TCGA-ZF-AA4W-01 X 96139744 96139744 T C RPA4 Silent p.I145I 0.22 TCGA-ZF-AA4X-01 10 101445609 101445609 C G ENTPD7 Silent p.L203L 0.11 TCGA-ZF-AA4X-01 10 102777990 102777990 C T PDZD7 Missense_Mutation p.R463H 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 10 103294607 103294607 C T BTRC Silent p.V429V 0.31 TCGA-ZF-AA4X-01 10 104157101 104157101 G C NFKB2 Missense_Mutation p.M146I 0.30 deleterious(0.03) benign(0.137) TCGA-ZF-AA4X-01 10 104436627 104436627 C T ARL3 3'UTR 0.30 TCGA-ZF-AA4X-01 10 120085695 120085695 C T FAM204A Missense_Mutation p.E172K 0.10 deleterious(0.05) benign(0.161) TCGA-ZF-AA4X-01 10 12110991 12110991 C T DHTKD1 5'UTR 0.29 TCGA-ZF-AA4X-01 10 121658409 121658409 C T SEC23IP Missense_Mutation p.H212Y 0.11 tolerated(1) benign(0.001) TCGA-ZF-AA4X-01 10 123600704 123600704 G A ATE1 Silent p.I350I 0.26 TCGA-ZF-AA4X-01 10 127530490 127530490 C G DHX32 Missense_Mutation p.L455F 0.16 deleterious(0) possibly_damaging(0.609) TCGA-ZF-AA4X-01 10 135193706 135193706 G A PAOX Missense_Mutation p.E129K 0.24 tolerated(0.17) possibly_damaging(0.457) TCGA-ZF-AA4X-01 10 16975234 16975234 G A CUBN Silent p.F1992F 0.07 TCGA-ZF-AA4X-01 10 18940110 18940110 G A NSUN6 Missense_Mutation p.S8F 0.38 deleterious(0.03) benign(0.013) TCGA-ZF-AA4X-01 10 26417354 26417354 G C MYO3A Missense_Mutation p.D717H 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 10 27499770 27499770 C T ACBD5 Missense_Mutation p.E393K 0.31 tolerated(0.07) possibly_damaging(0.559) TCGA-ZF-AA4X-01 10 27499827 27499827 C G ACBD5 Missense_Mutation p.D374H 0.41 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 10 27506991 27506991 C T ACBD5 Silent p.L249L 0.30 TCGA-ZF-AA4X-01 10 27506995 27506995 G T ACBD5 Missense_Mutation p.S248Y 0.28 tolerated(0.05) possibly_damaging(0.681) TCGA-ZF-AA4X-01 10 38345344 38345344 C G ZNF33A Silent p.L764L 0.11 TCGA-ZF-AA4X-01 10 47087215 47087215 C G NPY4R Missense_Mutation p.I144M 0.06 deleterious(0) probably_damaging(0.91) TCGA-ZF-AA4X-01 10 51582257 51582257 C T NCOA4 Silent p.I201I 0.16 TCGA-ZF-AA4X-01 10 60549193 60549193 C T BICC1 Nonsense_Mutation p.Q258* 0.16 TCGA-ZF-AA4X-01 10 6155492 6155492 C G RBM17 Nonsense_Mutation p.S293* 0.06 TCGA-ZF-AA4X-01 10 70123375 70123375 G C RUFY2 Missense_Mutation p.L543V 0.26 tolerated(0.06) possibly_damaging(0.749) TCGA-ZF-AA4X-01 10 75541950 75541950 G A CHCHD1 Silent p.E39E 0.35 TCGA-ZF-AA4X-01 10 7816797 7816797 G T KIN Nonsense_Mutation p.S222* 0.38 TCGA-ZF-AA4X-01 10 81319098 81319098 C T SFTPA2 Missense_Mutation p.D48N 0.07 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4X-01 10 81371559 81371559 G T SFTPA1 Missense_Mutation p.G8V 0.12 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-ZF-AA4X-01 10 90707057 90707057 C T ACTA2 Silent p.P72P 0.10 TCGA-ZF-AA4X-01 10 93252163 93252163 G A HECTD2 Missense_Mutation p.E452K 0.12 deleterious(0) probably_damaging(0.957) TCGA-ZF-AA4X-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.40 TCGA-ZF-AA4X-01 10 96282137 96282137 G A TBC1D12 Missense_Mutation p.E643K 0.28 tolerated(0.14) probably_damaging(0.958) TCGA-ZF-AA4X-01 10 96805592 96805592 G A CYP2C8 Silent p.L312L 0.21 TCGA-ZF-AA4X-01 10 98312817 98312817 C G TM9SF3 Splice_Site p.X221_splice 0.32 TCGA-ZF-AA4X-01 10 98742371 98742371 G A C10orf12 Missense_Mutation p.M408I 0.28 tolerated(0.21) benign(0.007) TCGA-ZF-AA4X-01 10 99133438 99133438 G A RRP12 Silent p.F640F 0.13 TCGA-ZF-AA4X-01 10 99197504 99197504 C G EXOSC1 Missense_Mutation p.E117Q 0.31 deleterious(0.04) probably_damaging(0.941) TCGA-ZF-AA4X-01 11 10014034 10014034 G A SBF2 Silent p.L408L 0.26 TCGA-ZF-AA4X-01 11 108153482 108153482 G A ATM Missense_Mutation p.D1208N 0.24 deleterious(0.03) benign(0.418) TCGA-ZF-AA4X-01 11 108153593 108153593 G C ATM Missense_Mutation p.E1245Q 0.14 tolerated(0.21) benign(0.064) TCGA-ZF-AA4X-01 11 108155108 108155108 G A ATM Missense_Mutation p.E1301K 0.28 tolerated(0.33) benign(0.044) TCGA-ZF-AA4X-01 11 108155118 108155118 G A ATM Missense_Mutation p.R1304K 0.29 tolerated(0.68) benign(0.001) TCGA-ZF-AA4X-01 11 110450067 110450067 C G ARHGAP20 3'UTR 0.48 TCGA-ZF-AA4X-01 11 113106018 113106018 G A NCAM1 Intron 0.28 TCGA-ZF-AA4X-01 11 113604498 113604498 G A ZW10 Missense_Mutation p.S753F 0.17 deleterious(0) possibly_damaging(0.806) TCGA-ZF-AA4X-01 11 113860227 113860227 C G HTR3A Missense_Mutation p.D431E 0.45 tolerated(0.49) benign(0.02) TCGA-ZF-AA4X-01 11 114393095 114393095 C G NXPE1 Silent p.L271L 0.06 TCGA-ZF-AA4X-01 11 116633598 116633598 G A BUD13 Missense_Mutation p.S236L 0.25 tolerated(0.13) benign(0.013) TCGA-ZF-AA4X-01 11 118083652 118083652 C A AMICA1 Intron 0.25 TCGA-ZF-AA4X-01 11 118260495 118260495 G C UBE4A Missense_Mutation p.L888F 0.20 tolerated(0.08) probably_damaging(0.968) TCGA-ZF-AA4X-01 11 118530140 118530140 C A TREH Missense_Mutation p.K457N 0.36 tolerated(0.92) benign(0.004) TCGA-ZF-AA4X-01 11 118778990 118778990 G A BCL9L Missense_Mutation p.S134L 0.44 benign(0.001) TCGA-ZF-AA4X-01 11 118889590 118889590 G C TRAPPC4 Missense_Mutation p.E29Q 0.27 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA4X-01 11 119169209 119169209 C A CBL Missense_Mutation p.S798Y 0.32 deleterious_low_confidence(0.01) benign(0.229) TCGA-ZF-AA4X-01 11 120345330 120345330 G C ARHGEF12 Missense_Mutation p.R1032T 0.30 deleterious(0) probably_damaging(0.922) TCGA-ZF-AA4X-01 11 120347414 120347414 C T ARHGEF12 Nonsense_Mutation p.Q1108* 0.22 TCGA-ZF-AA4X-01 11 126133719 126133719 G T SRPR 3'UTR 0.19 TCGA-ZF-AA4X-01 11 1269899 1269899 C T MUC5B Missense_Mutation p.S3930F 0.14 unknown(0) TCGA-ZF-AA4X-01 11 129321406 129321406 G C BARX2 3'UTR 0.40 TCGA-ZF-AA4X-01 11 131240618 131240618 G A NTM 5'UTR 0.38 TCGA-ZF-AA4X-01 11 133796839 133796839 G A IGSF9B Silent p.F593F 0.42 TCGA-ZF-AA4X-01 11 1774826 1774826 G A CTSD Silent p.L382L 0.54 TCGA-ZF-AA4X-01 11 27384432 27384432 C G CCDC34 Missense_Mutation p.E104Q 0.37 tolerated(0.09) benign(0.094) TCGA-ZF-AA4X-01 11 47311756 47311756 C T MADD Silent p.L1020L 0.16 TCGA-ZF-AA4X-01 11 5510200 5510200 G C OR52D1 Missense_Mutation p.L88F 0.49 tolerated(1) probably_damaging(0.999) TCGA-ZF-AA4X-01 11 55406235 55406235 G A OR4P4 Missense_Mutation p.M134I 0.06 deleterious(0.02) probably_damaging(0.928) TCGA-ZF-AA4X-01 11 57572242 57572242 C T CTNND1 Missense_Mutation p.S571L 0.73 tolerated(0.58) benign(0.001) TCGA-ZF-AA4X-01 11 5841715 5841715 C T OR52N2 Silent p.L50L 0.07 TCGA-ZF-AA4X-01 11 61506960 61506960 C G DAGLA Silent p.T560T 0.32 TCGA-ZF-AA4X-01 11 61645634 61645634 G A FADS3 Silent p.F267F 0.11 TCGA-ZF-AA4X-01 11 61646008 61646008 G A FADS3 Silent p.F241F 0.10 TCGA-ZF-AA4X-01 11 6231876 6231876 C T C11orf42 Missense_Mutation p.S290L 0.23 deleterious_low_confidence(0) benign(0.329) TCGA-ZF-AA4X-01 11 62455464 62455464 C T LRRN4CL Missense_Mutation p.E173K 0.61 tolerated(0.56) benign(0.002) TCGA-ZF-AA4X-01 11 62931293 62931293 G C SLC22A25 3'UTR 0.42 TCGA-ZF-AA4X-01 11 64494772 64494774 TAT - RASGRP2 Missense_Mutation 0.19 TCGA-ZF-AA4X-01 11 64514753 64514753 G T PYGM Missense_Mutation p.S752Y 0.14 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA4X-01 11 64669520 64669520 C T ATG2A Missense_Mutation p.E1345K 0.52 tolerated(0.72) benign(0.028) TCGA-ZF-AA4X-01 11 7070905 7070905 G T NLRP14 Missense_Mutation p.L709F 0.17 tolerated(0.32) benign(0.139) TCGA-ZF-AA4X-01 11 71729987 71729987 G A NUMA1 Silent p.I208I 0.57 TCGA-ZF-AA4X-01 11 74047747 74047747 C G PGM2L1 Missense_Mutation p.E607Q 0.17 tolerated(0.11) benign(0.116) TCGA-ZF-AA4X-01 11 76670020 76670020 C T ACER3 Intron 0.66 TCGA-ZF-AA4X-01 11 76795980 76795980 G A CAPN5 Silent p.L16L 0.26 TCGA-ZF-AA4X-01 11 7949369 7949369 G C OR10A6 Missense_Mutation p.L281V 0.20 tolerated(1) benign(0.084) TCGA-ZF-AA4X-01 11 85375175 85375175 C T CREBZF Missense_Mutation p.E249K 0.05 deleterious(0.05) probably_damaging(0.995) TCGA-ZF-AA4X-01 11 94331053 94331053 C T PIWIL4 Missense_Mutation p.S451L 0.45 tolerated(0.24) benign(0.002) TCGA-ZF-AA4X-01 12 102122971 102122971 C G SYCP3 Missense_Mutation p.K191N 0.09 deleterious(0.03) possibly_damaging(0.501) TCGA-ZF-AA4X-01 12 10271151 10271151 G A CLEC7A Missense_Mutation p.S217F 0.39 tolerated(0.06) benign(0.071) TCGA-ZF-AA4X-01 12 10961883 10961883 C G TAS2R9 Missense_Mutation p.L264F 0.09 tolerated(0.19) possibly_damaging(0.525) TCGA-ZF-AA4X-01 12 11139385 11139385 G C TAS2R50 Silent p.G25G 0.18 TCGA-ZF-AA4X-01 12 111956074 111956074 C G ATXN2 Missense_Mutation p.D542H 0.19 probably_damaging(0.999) TCGA-ZF-AA4X-01 12 112478314 112478314 G C NAA25 Missense_Mutation p.L837V 0.12 tolerated(0.82) benign(0.002) TCGA-ZF-AA4X-01 12 114374920 114374920 G C RBM19 Missense_Mutation p.L654V 0.18 deleterious(0) probably_damaging(0.983) TCGA-ZF-AA4X-01 12 122716746 122716746 G A VPS33A 3'UTR 0.18 TCGA-ZF-AA4X-01 12 122763373 122763373 G C CLIP1 Silent p.L1294L 0.26 TCGA-ZF-AA4X-01 12 123286173 123286173 G A CCDC62 Missense_Mutation p.E494K 0.14 tolerated(0.19) benign(0.112) TCGA-ZF-AA4X-01 12 131476779 131476779 C T GPR133 Intron 0.22 TCGA-ZF-AA4X-01 12 131488773 131488773 C T GPR133 Missense_Mutation p.S396F 0.25 deleterious(0.01) possibly_damaging(0.62) TCGA-ZF-AA4X-01 12 131569127 131569127 G A GPR133 Silent p.T530T 0.38 TCGA-ZF-AA4X-01 12 132491247 132491247 C A EP400 Silent p.V1043V 0.38 TCGA-ZF-AA4X-01 12 14577421 14577421 C G ATF7IP Missense_Mutation p.S191C 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-ZF-AA4X-01 12 21624538 21624538 G C RECQL Missense_Mutation p.I497M 0.13 deleterious(0.03) possibly_damaging(0.785) TCGA-ZF-AA4X-01 12 25308333 25308333 C G CASC1 Missense_Mutation p.R71T 0.19 deleterious(0) possibly_damaging(0.904) TCGA-ZF-AA4X-01 12 26580881 26580881 G C ITPR2 Missense_Mutation p.L2304V 0.15 tolerated(0.83) benign(0.27) TCGA-ZF-AA4X-01 12 5154236 5154236 C G KCNA5 Missense_Mutation p.S308C 0.14 tolerated(0.05) benign(0.321) TCGA-ZF-AA4X-01 12 52822458 52822458 C T KRT75 Missense_Mutation p.E369K 0.15 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4X-01 12 53218097 53218097 G A KRT79 Missense_Mutation p.S302F 0.63 deleterious(0) probably_damaging(0.976) TCGA-ZF-AA4X-01 12 56865245 56865245 G C GLS2 3'UTR 0.32 TCGA-ZF-AA4X-01 12 57114257 57114257 G A NACA Nonsense_Mutation p.Q353* 0.18 TCGA-ZF-AA4X-01 12 64383738 64383738 G A SRGAP1 Silent p.L104L 0.09 TCGA-ZF-AA4X-01 12 64814001 64814001 C G XPOT Missense_Mutation p.S214C 0.08 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA4X-01 12 6571238 6571238 G A TAPBPL Missense_Mutation p.E444K 0.27 tolerated_low_confidence(0.28) benign(0) TCGA-ZF-AA4X-01 12 6637893 6637893 G T NCAPD2 Missense_Mutation p.M1116I 0.34 deleterious(0.01) possibly_damaging(0.475) TCGA-ZF-AA4X-01 12 69229748 69229748 C G MDM2 Nonsense_Mutation p.S275* 0.08 TCGA-ZF-AA4X-01 12 70133513 70133513 C G RAB3IP 5'UTR 0.50 TCGA-ZF-AA4X-01 12 77449784 77449784 C G E2F7 Missense_Mutation p.D74H 0.27 deleterious(0) probably_damaging(0.961) TCGA-ZF-AA4X-01 12 83290054 83290054 C T TMTC2 Missense_Mutation p.S371F 0.12 deleterious(0.02) benign(0.033) TCGA-ZF-AA4X-01 12 85531706 85531706 G C LRRIQ1 Missense_Mutation p.E1430Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA4X-01 12 86373852 86373852 C T MGAT4C Missense_Mutation p.D218N 0.20 tolerated(0.23) benign(0.024) TCGA-ZF-AA4X-01 12 9311135 9311135 G C PZP Missense_Mutation p.R1059G 0.18 deleterious(0) possibly_damaging(0.496) TCGA-ZF-AA4X-01 12 980483 980483 C T WNK1 Missense_Mutation p.S731L 0.42 tolerated(0.68) unknown(0) TCGA-ZF-AA4X-01 13 102105260 102105260 C G ITGBL1 Missense_Mutation p.Q26E 0.36 tolerated_low_confidence(0.22) benign(0.029) TCGA-ZF-AA4X-01 13 110814709 110814709 G A COL4A1 Missense_Mutation p.H1444Y 0.07 unknown(0) TCGA-ZF-AA4X-01 13 111933019 111933019 C A ARHGEF7 Missense_Mutation p.H595N 0.47 tolerated(0.06) benign(0.028) TCGA-ZF-AA4X-01 13 113724431 113724431 C T MCF2L Nonsense_Mutation p.Q314* 0.53 TCGA-ZF-AA4X-01 13 113975773 113975773 C T LAMP1 Missense_Mutation p.P311S 0.15 tolerated(0.07) benign(0.129) TCGA-ZF-AA4X-01 13 114150042 114150042 G A TMCO3 Nonsense_Mutation p.W49* 0.19 TCGA-ZF-AA4X-01 13 115030646 115030646 G A CDC16 Missense_Mutation p.D512N 0.28 tolerated(0.07) benign(0.156) TCGA-ZF-AA4X-01 13 26343323 26343323 G A ATP8A2 Missense_Mutation p.E842K 0.33 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA4X-01 13 37678388 37678388 C G CSNK1A1L Missense_Mutation p.D336H 0.29 deleterious_low_confidence(0.03) benign(0) TCGA-ZF-AA4X-01 13 49039462 49039462 C G RB1 Nonsense_Mutation p.S816* 0.59 TCGA-ZF-AA4X-01 13 50059962 50059962 T G SETDB2 Intron 0.20 TCGA-ZF-AA4X-01 13 77672613 77672613 C G MYCBP2 Missense_Mutation p.L2854F 0.46 probably_damaging(0.94) TCGA-ZF-AA4X-01 13 77862371 77862371 C G MYCBP2 Missense_Mutation p.K135N 0.46 benign(0.118) TCGA-ZF-AA4X-01 13 96592237 96592237 G A UGGT2 Missense_Mutation p.H596Y 0.31 tolerated(0.08) benign(0.002) TCGA-ZF-AA4X-01 14 102508033 102508033 G A DYNC1H1 Missense_Mutation p.E4022K 0.16 benign(0.297) TCGA-ZF-AA4X-01 14 103806875 103806875 G C EIF5 Missense_Mutation p.E395Q 0.12 tolerated(0.13) benign(0.085) TCGA-ZF-AA4X-01 14 103987685 103987685 C G CKB Missense_Mutation p.D190H 0.14 deleterious(0) benign(0.402) TCGA-ZF-AA4X-01 14 107078514 107078514 G A IGHV1-58 Silent p.I70I 0.09 TCGA-ZF-AA4X-01 14 20404541 20404541 C T OR4K1 Missense_Mutation p.T239I 0.15 deleterious(0.02) possibly_damaging(0.861) TCGA-ZF-AA4X-01 14 20586586 20586586 G C OR4K17 Missense_Mutation p.E341Q 0.10 tolerated(0.31) benign(0.004) TCGA-ZF-AA4X-01 14 23456700 23456700 G C C14orf93 Missense_Mutation p.F447L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-ZF-AA4X-01 14 24529269 24529269 G A LRRC16B Silent p.Q653Q 0.35 TCGA-ZF-AA4X-01 14 24760829 24760829 G A DHRS1 Silent p.F219F 0.13 TCGA-ZF-AA4X-01 14 24842515 24842515 G A NFATC4 Missense_Mutation p.V563I 0.15 tolerated(1) benign(0.002) TCGA-ZF-AA4X-01 14 30068864 30068864 G A PRKD1 Nonsense_Mutation p.Q689* 0.47 TCGA-ZF-AA4X-01 14 35742864 35742864 C G KIAA0391 3'UTR 0.40 TCGA-ZF-AA4X-01 14 39748683 39748683 C G CTAGE5 Missense_Mutation p.S83C 0.41 deleterious(0) possibly_damaging(0.866) TCGA-ZF-AA4X-01 14 50140893 50140893 G A POLE2 Missense_Mutation p.T122I 0.03 tolerated(0.18) benign(0.067) TCGA-ZF-AA4X-01 14 52520371 52520371 G A NID2 Missense_Mutation p.S452L 0.09 tolerated(0.41) benign(0.004) TCGA-ZF-AA4X-01 14 53348071 53348071 C T FERMT2 Missense_Mutation p.E215K 0.34 tolerated(0.17) possibly_damaging(0.63) TCGA-ZF-AA4X-01 14 60582007 60582007 G C PCNXL4 Missense_Mutation p.L161F 0.08 deleterious(0) benign(0.303) TCGA-ZF-AA4X-01 14 64006396 64006396 G A PPP2R5E Missense_Mutation p.S3L 0.35 deleterious_low_confidence(0) benign(0.005) TCGA-ZF-AA4X-01 14 69262893 69262893 G A ZFP36L1 5'Flank 0.16 TCGA-ZF-AA4X-01 14 71500733 71500733 G C PCNX Missense_Mutation p.E1252Q 0.30 tolerated(0.09) possibly_damaging(0.557) TCGA-ZF-AA4X-01 14 75329888 75329888 G C PROX2 Missense_Mutation p.S217C 0.22 tolerated(0.11) benign(0.045) TCGA-ZF-AA4X-01 14 77275699 77275699 G A ANGEL1 Missense_Mutation p.R118W 0.09 tolerated(0.1) benign(0.001) TCGA-ZF-AA4X-01 14 89154718 89154718 G C EML5 Missense_Mutation p.S880C 0.22 deleterious(0) probably_damaging(0.987) TCGA-ZF-AA4X-01 14 90744739 90744739 C T NRDE2 Missense_Mutation p.E1146K 0.34 deleterious(0) unknown(0) TCGA-ZF-AA4X-01 14 91526717 91526717 C T RPS6KA5 Missense_Mutation p.G21E 0.50 tolerated_low_confidence(0.9) unknown(0) TCGA-ZF-AA4X-01 14 96706649 96706649 G A BDKRB2 Intron 0.05 TCGA-ZF-AA4X-01 15 25200176 25200176 G C SNURF 5'UTR 0.43 TCGA-ZF-AA4X-01 15 28261290 28261290 C T OCA2 Missense_Mutation p.E284K 0.07 tolerated(0.1) benign(0.018) TCGA-ZF-AA4X-01 15 34140574 34140574 C G RYR3 Missense_Mutation p.S4527C 0.11 possibly_damaging(0.469) TCGA-ZF-AA4X-01 15 41624617 41624617 G A OIP5 Missense_Mutation p.S48L 0.08 tolerated(0.08) probably_damaging(0.969) TCGA-ZF-AA4X-01 15 42211776 42211776 C A EHD4 Missense_Mutation p.D186Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 15 43446902 43446902 C G TMEM62 Missense_Mutation p.S352C 0.47 deleterious(0.01) probably_damaging(0.927) TCGA-ZF-AA4X-01 15 43621748 43621748 C G LCMT2 Missense_Mutation p.G314R 0.23 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 15 43820186 43820186 C T MAP1A Missense_Mutation p.S2172L 0.10 probably_damaging(0.998) TCGA-ZF-AA4X-01 15 44951276 44951276 C T SPG11 Splice_Site p.X223_splice 0.28 TCGA-ZF-AA4X-01 15 48063711 48063711 C A SEMA6D Missense_Mutation p.P984Q 0.53 tolerated(0.1) benign(0.005) TCGA-ZF-AA4X-01 15 49531513 49531513 C G GALK2 Silent p.V151V 0.25 TCGA-ZF-AA4X-01 15 49611798 49611798 C T GALK2 Intron 0.19 TCGA-ZF-AA4X-01 15 55838328 55838328 C G PYGO1 Missense_Mutation p.E385Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4X-01 15 58006998 58006998 T C POLR2M 3'UTR 0.70 TCGA-ZF-AA4X-01 15 59406801 59406801 C T CCNB2 Silent p.L142L 0.20 TCGA-ZF-AA4X-01 15 63029147 63029147 G A TLN2 Silent p.S1143S 0.23 TCGA-ZF-AA4X-01 15 65347258 65347258 C T RASL12 Silent p.L260L 0.10 TCGA-ZF-AA4X-01 15 73415138 73415138 C T NEO1 Missense_Mutation p.P241S 0.22 tolerated(0.39) benign(0.002) TCGA-ZF-AA4X-01 15 75182428 75182428 G A MPI Missense_Mutation p.R5Q 0.20 tolerated(0.17) benign(0.014) TCGA-ZF-AA4X-01 15 75197033 75197033 C T FAM219B Missense_Mutation p.R134K 0.05 tolerated(0.09) probably_damaging(0.994) TCGA-ZF-AA4X-01 15 81440798 81440798 C A C15orf26 Missense_Mutation p.S277Y 0.33 deleterious(0) benign(0.218) TCGA-ZF-AA4X-01 15 81664943 81664943 C T TMC3 Silent p.L75L 0.16 TCGA-ZF-AA4X-01 15 89860078 89860078 G C FANCI 3'UTR 0.68 TCGA-ZF-AA4X-01 15 89860756 89860756 G A POLG Missense_Mutation p.A1165V 0.49 tolerated(0.08) probably_damaging(0.998) TCGA-ZF-AA4X-01 15 90152170 90152170 G A TICRR Silent p.K953K 0.19 TCGA-ZF-AA4X-01 16 10769914 10769914 G T TEKT5 Missense_Mutation p.Q330K 0.29 deleterious(0.03) benign(0.102) TCGA-ZF-AA4X-01 16 1260648 1260648 G A CACNA1H Silent p.V1345V 0.33 TCGA-ZF-AA4X-01 16 1270422 1270422 G A CACNA1H Missense_Mutation p.E2164K 0.13 deleterious(0.04) benign(0.427) TCGA-ZF-AA4X-01 16 1306556 1306556 G A TPSD1 Missense_Mutation p.G41E 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4X-01 16 1515311 1515311 C G CLCN7 Missense_Mutation p.G57A 0.26 tolerated(0.09) benign(0.334) TCGA-ZF-AA4X-01 16 1547092 1547092 C A TELO2 Silent p.V223V 0.14 TCGA-ZF-AA4X-01 16 1748954 1748954 G C HN1L Missense_Mutation p.K176N 0.11 deleterious(0) probably_damaging(0.928) TCGA-ZF-AA4X-01 16 21172485 21172485 G A TMEM159 5'UTR 0.59 TCGA-ZF-AA4X-01 16 2152829 2152829 G A PKD1 Silent p.F2978F 0.64 TCGA-ZF-AA4X-01 16 2239141 2239141 G T CASKIN1 Silent p.L168L 0.31 TCGA-ZF-AA4X-01 16 2273626 2273626 G A E4F1 Silent p.A4A 0.38 TCGA-ZF-AA4X-01 16 2287904 2287904 C G DNASE1L2 Nonsense_Mutation p.S243* 0.14 TCGA-ZF-AA4X-01 16 23224213 23224213 G A SCNN1G Missense_Mutation p.E477K 0.15 tolerated(0.07) possibly_damaging(0.646) TCGA-ZF-AA4X-01 16 23706377 23706377 C T ERN2 Silent p.L669L 0.33 TCGA-ZF-AA4X-01 16 30727611 30727611 C T SRCAP Intron 0.28 TCGA-ZF-AA4X-01 16 30727752 30727752 C T SRCAP Silent p.F923F 0.31 TCGA-ZF-AA4X-01 16 31393135 31393135 C T ITGAX Silent p.F1133F 0.27 TCGA-ZF-AA4X-01 16 3297090 3297090 C A MEFV Missense_Mutation p.D505Y 0.08 deleterious(0.02) benign(0.168) TCGA-ZF-AA4X-01 16 3335110 3335110 C G ZNF263 Missense_Mutation p.L147V 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-ZF-AA4X-01 16 3554826 3554826 G A CLUAP1 Silent p.V43V 0.18 TCGA-ZF-AA4X-01 16 3632618 3632618 G A SLX4 Nonsense_Mutation p.Q1744* 0.43 TCGA-ZF-AA4X-01 16 53190497 53190497 C T CHD9 Nonsense_Mutation p.Q166* 0.06 TCGA-ZF-AA4X-01 16 53190559 53190559 C G CHD9 Silent p.L186L 0.06 TCGA-ZF-AA4X-01 16 53190941 53190941 C G CHD9 Missense_Mutation p.H314D 0.09 benign(0.002) TCGA-ZF-AA4X-01 16 56601680 56601680 G A MT4 Missense_Mutation p.G17R 0.34 deleterious(0) probably_damaging(0.988) TCGA-ZF-AA4X-01 16 57060528 57060528 C G NLRC5 Nonsense_Mutation p.S558* 0.12 TCGA-ZF-AA4X-01 16 57829018 57829018 C A KIFC3 Missense_Mutation p.D70Y 0.20 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-ZF-AA4X-01 16 61687907 61687907 C T CDH8 Missense_Mutation p.D669N 0.27 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 16 66975728 66975728 C G CES2 Missense_Mutation p.L436V 0.08 deleterious(0.05) benign(0.169) TCGA-ZF-AA4X-01 16 67100616 67100616 G A CBFB Missense_Mutation p.G105E 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 16 67327463 67327463 C T KCTD19 Silent p.Q734Q 0.08 TCGA-ZF-AA4X-01 16 69352557 69352557 G A VPS4A Missense_Mutation p.D96N 0.20 tolerated(0.27) benign(0.003) TCGA-ZF-AA4X-01 16 69352563 69352563 G A VPS4A Missense_Mutation p.D98N 0.20 tolerated(0.14) benign(0.004) TCGA-ZF-AA4X-01 16 71482604 71482604 G A ZNF23 Missense_Mutation p.H442Y 0.20 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 16 787258 787258 G A NARFL Silent p.I78I 0.10 TCGA-ZF-AA4X-01 16 84695223 84695223 C T KLHL36 Silent p.F445F 0.22 TCGA-ZF-AA4X-01 16 87760459 87760459 G A KLHDC4 Missense_Mutation p.S224L 0.25 deleterious(0.01) benign(0.009) TCGA-ZF-AA4X-01 16 88706268 88706268 G A IL17C Missense_Mutation p.E128K 0.33 deleterious(0.03) probably_damaging(0.966) TCGA-ZF-AA4X-01 16 88729426 88729426 G C MVD Missense_Mutation p.I21M 0.25 deleterious(0) probably_damaging(0.936) TCGA-ZF-AA4X-01 16 89348371 89348371 C T ANKRD11 Missense_Mutation p.D1527N 0.21 benign(0.298) TCGA-ZF-AA4X-01 16 90141837 90141837 C T PRDM7 Missense_Mutation p.E39K 0.16 deleterious(0.05) probably_damaging(0.992) TCGA-ZF-AA4X-01 17 1400009 1400009 G A INPP5K Missense_Mutation p.S351L 0.19 tolerated(0.99) benign(0.002) TCGA-ZF-AA4X-01 17 14095375 14095375 G A COX10 Silent p.V255V 0.37 TCGA-ZF-AA4X-01 17 15952281 15952281 C T NCOR1 Silent p.E2138E 0.30 TCGA-ZF-AA4X-01 17 16251981 16251981 C T CENPV Silent p.K176K 0.18 TCGA-ZF-AA4X-01 17 1704169 1704169 G A SMYD4 Silent p.F173F 0.08 TCGA-ZF-AA4X-01 17 17480267 17480267 G A PEMT Silent p.I57I 0.21 TCGA-ZF-AA4X-01 17 19215376 19215376 C T EPN2 Silent p.L297L 0.29 TCGA-ZF-AA4X-01 17 2235635 2235635 C T TSR1 Missense_Mutation p.E442K 0.22 tolerated(0.14) benign(0.008) TCGA-ZF-AA4X-01 17 2237954 2237954 C G TSR1 Missense_Mutation p.E265Q 0.19 tolerated(0.17) benign(0.128) TCGA-ZF-AA4X-01 17 25758266 25758266 C T TBC1D3P5 RNA 0.15 TCGA-ZF-AA4X-01 17 26688300 26688300 G A TMEM199 3'UTR 0.07 TCGA-ZF-AA4X-01 17 27051472 27051472 C T TLCD1 3'UTR 0.07 TCGA-ZF-AA4X-01 17 30535454 30535454 G A RHOT1 Intron 0.20 TCGA-ZF-AA4X-01 17 3119226 3119226 G C OR1A1 Missense_Mutation p.M104I 0.22 tolerated(0.07) benign(0.008) TCGA-ZF-AA4X-01 17 33592613 33592613 C T SLFN5 Silent p.F794F 0.16 TCGA-ZF-AA4X-01 17 35914035 35914035 G C SYNRG Nonsense_Mutation p.S597* 0.16 TCGA-ZF-AA4X-01 17 37627570 37627570 G C CDK12 Missense_Mutation p.L495F 0.04 possibly_damaging(0.879) TCGA-ZF-AA4X-01 17 37871731 37871731 C T ERBB2 Silent p.L419L 0.23 TCGA-ZF-AA4X-01 17 38420952 38420952 C T WIPF2 Missense_Mutation p.S175F 0.11 deleterious(0.01) possibly_damaging(0.823) TCGA-ZF-AA4X-01 17 40035106 40035106 C T ACLY Silent p.L779L 0.07 TCGA-ZF-AA4X-01 17 4020372 4020372 G A ZZEF1 Silent p.S196S 0.08 TCGA-ZF-AA4X-01 17 4020373 4020373 G A ZZEF1 Missense_Mutation p.S196F 0.08 deleterious(0.03) possibly_damaging(0.571) TCGA-ZF-AA4X-01 17 4047155 4047155 C T CYB5D2 Missense_Mutation p.R36C 0.24 deleterious(0) probably_damaging(0.972) TCGA-ZF-AA4X-01 17 40997901 40997901 C T AOC2 Missense_Mutation p.P420S 0.22 deleterious(0.04) benign(0.232) TCGA-ZF-AA4X-01 17 41598191 41598191 G A DHX8 Missense_Mutation p.E1004K 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 17 42274363 42274363 C G ATXN7L3 Missense_Mutation p.E130Q 0.20 tolerated(0.07) possibly_damaging(0.846) TCGA-ZF-AA4X-01 17 42427059 42427059 C T GRN Missense_Mutation p.H97Y 0.19 deleterious(0) benign(0.169) TCGA-ZF-AA4X-01 17 42477309 42477309 C G GPATCH8 Missense_Mutation p.K712N 0.10 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-ZF-AA4X-01 17 43473610 43473610 C G ARHGAP27 Silent p.L397L 0.25 TCGA-ZF-AA4X-01 17 4349438 4349438 G A SPNS3 Silent p.V166V 0.32 TCGA-ZF-AA4X-01 17 46685224 46685224 C T HOXB7 Missense_Mutation p.E212K 0.39 tolerated(0.64) benign(0.001) TCGA-ZF-AA4X-01 17 46805601 46805601 C G HOXB13 Missense_Mutation p.E119Q 0.19 tolerated(0.05) possibly_damaging(0.784) TCGA-ZF-AA4X-01 17 48606084 48606084 G A MYCBPAP Silent p.V855V 0.44 TCGA-ZF-AA4X-01 17 48735442 48735442 G A ABCC3 Splice_Site p.X163_splice 0.06 TCGA-ZF-AA4X-01 17 49713291 49713291 C T CA10 Silent p.S238S 0.23 TCGA-ZF-AA4X-01 17 5071275 5071275 G A USP6 Missense_Mutation p.E1029K 0.13 tolerated_low_confidence(0.08) possibly_damaging(0.771) TCGA-ZF-AA4X-01 17 5086556 5086556 G T ZNF594 Missense_Mutation p.F332L 0.20 deleterious(0) benign(0.095) TCGA-ZF-AA4X-01 17 58539404 58539404 C G APPBP2 Missense_Mutation p.E261Q 0.09 deleterious(0.05) possibly_damaging(0.454) TCGA-ZF-AA4X-01 17 59560972 59560972 C G TBX4 3'UTR 0.33 TCGA-ZF-AA4X-01 17 60130008 60130008 G C MED13 Missense_Mutation p.F120L 0.23 deleterious(0) possibly_damaging(0.785) TCGA-ZF-AA4X-01 17 67221503 67221503 C T ABCA10 5'UTR 0.21 TCGA-ZF-AA4X-01 17 71232922 71232922 C T C17orf80 Missense_Mutation p.S434L 0.39 tolerated(0.06) possibly_damaging(0.654) TCGA-ZF-AA4X-01 17 7132346 7132346 C G DVL2 Missense_Mutation p.E326Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4X-01 17 7132511 7132511 C T DVL2 Missense_Mutation p.M300I 0.23 deleterious(0) possibly_damaging(0.68) TCGA-ZF-AA4X-01 17 7250503 7250503 G C ACAP1 Missense_Mutation p.E429Q 0.10 deleterious(0.02) probably_damaging(0.947) TCGA-ZF-AA4X-01 17 72861003 72861003 C T FDXR Silent p.V263V 0.20 TCGA-ZF-AA4X-01 17 73045345 73045345 G T KCTD2 Missense_Mutation p.D124Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4X-01 17 73106392 73106392 G A ARMC7 Silent p.Q3Q 0.17 TCGA-ZF-AA4X-01 17 73106398 73106398 G A ARMC7 Silent p.P5P 0.17 TCGA-ZF-AA4X-01 17 7358658 7358658 G A CHRNB1 Missense_Mutation p.R367K 0.10 tolerated(0.63) benign(0.439) TCGA-ZF-AA4X-01 17 73661148 73661148 G A RECQL5 Missense_Mutation p.L79F 0.18 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 17 74076444 74076444 C T ZACN Silent p.L161L 0.10 TCGA-ZF-AA4X-01 17 74077786 74077786 C T ZACN Missense_Mutation p.S277F 0.07 tolerated(0.17) probably_damaging(0.997) TCGA-ZF-AA4X-01 17 75484811 75484811 G A SEPT9 Nonsense_Mutation p.W376* 0.15 TCGA-ZF-AA4X-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.31 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA4X-01 17 7579485 7579485 C A TP53 Nonsense_Mutation p.E68* 0.43 TCGA-ZF-AA4X-01 17 7834868 7834868 G C TRAPPC1 Silent p.L42L 0.06 TCGA-ZF-AA4X-01 17 79060332 79060332 G C BAIAP2 Missense_Mutation p.K147N 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-ZF-AA4X-01 17 79954396 79954396 G A ASPSCR1 Missense_Mutation p.E203K 0.38 tolerated(0.65) unknown(0) TCGA-ZF-AA4X-01 17 79954410 79954410 C T ASPSCR1 Silent p.L207L 0.47 TCGA-ZF-AA4X-01 17 79995547 79995547 G A DCXR Silent p.F4F 0.31 TCGA-ZF-AA4X-01 17 7999952 7999952 G A ALOXE3 Missense_Mutation p.S842F 0.17 deleterious(0) probably_damaging(0.969) TCGA-ZF-AA4X-01 17 80085706 80085706 G T CCDC57 Missense_Mutation p.P810T 0.26 deleterious(0.04) possibly_damaging(0.803) TCGA-ZF-AA4X-01 17 8701203 8701203 C T MFSD6L Silent p.L412L 0.42 TCGA-ZF-AA4X-01 18 10471990 10471990 C G APCDD1 Missense_Mutation p.H236D 0.23 deleterious(0.04) probably_damaging(0.95) TCGA-ZF-AA4X-01 18 12009964 12009964 G A IMPA2 Missense_Mutation p.G105S 0.05 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 18 21110004 21110004 G A C18orf8 Missense_Mutation p.E503K 0.18 tolerated(0.16) probably_damaging(0.936) TCGA-ZF-AA4X-01 18 21422578 21422578 C T LAMA3 Missense_Mutation p.S1156F 0.18 possibly_damaging(0.463) TCGA-ZF-AA4X-01 18 25616465 25616465 C G CDH2 Intron 0.41 TCGA-ZF-AA4X-01 18 2595426 2595426 G T NDC80 Nonsense_Mutation p.E343* 0.25 TCGA-ZF-AA4X-01 18 3119943 3119943 C T MYOM1 Missense_Mutation p.M1014I 0.28 tolerated(0.06) benign(0.012) TCGA-ZF-AA4X-01 18 31324646 31324646 G A ASXL3 Missense_Mutation p.D1612N 0.38 benign(0.297) TCGA-ZF-AA4X-01 18 44560257 44560257 G C TCEB3B Nonsense_Mutation p.S460* 0.36 TCGA-ZF-AA4X-01 18 47765070 47765070 G A CCDC11 Nonsense_Mutation p.R407* 0.12 TCGA-ZF-AA4X-01 18 6941959 6941959 C T LAMA1 3'UTR 0.53 TCGA-ZF-AA4X-01 18 7009287 7009287 C G LAMA1 Missense_Mutation p.E1318Q 0.20 tolerated(0.06) possibly_damaging(0.62) TCGA-ZF-AA4X-01 19 11227586 11227586 C G LDLR Nonsense_Mutation p.S586* 0.18 TCGA-ZF-AA4X-01 19 11417429 11417429 G C TSPAN16 Missense_Mutation p.Q200H 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-ZF-AA4X-01 19 12125715 12125715 C T ZNF433 Missense_Mutation p.R656K 0.13 tolerated(0.36) benign(0.241) TCGA-ZF-AA4X-01 19 12759051 12759051 G A MAN2B1 Nonsense_Mutation p.Q868* 0.31 TCGA-ZF-AA4X-01 19 13060211 13060211 C T RAD23A Nonsense_Mutation p.Q268* 0.23 TCGA-ZF-AA4X-01 19 17373469 17373469 C T USHBP1 Silent p.E178E 0.40 TCGA-ZF-AA4X-01 19 18321959 18321959 C T PDE4C Missense_Mutation p.R640Q 0.17 tolerated(1) benign(0.066) TCGA-ZF-AA4X-01 19 19308934 19308934 C T RFXANK Silent p.L153L 0.12 TCGA-ZF-AA4X-01 19 19416845 19416845 G C SUGP1 Silent p.P117P 0.17 TCGA-ZF-AA4X-01 19 20727775 20727775 G C ZNF737 Missense_Mutation p.L412V 0.11 deleterious(0.01) unknown(0) TCGA-ZF-AA4X-01 19 2344616 2344616 C T SPPL2B RNA 0.19 TCGA-ZF-AA4X-01 19 2876272 2876272 G C ZNF556 Missense_Mutation p.L104F 0.38 deleterious(0.03) possibly_damaging(0.526) TCGA-ZF-AA4X-01 19 30312972 30312972 C G CCNE1 Missense_Mutation p.L259V 0.29 tolerated(0.15) benign(0.005) TCGA-ZF-AA4X-01 19 33183224 33183224 G A NUDT19 Missense_Mutation p.E120K 0.20 tolerated(0.07) benign(0.229) TCGA-ZF-AA4X-01 19 33359434 33359434 C T SLC7A9 Missense_Mutation p.D3N 0.15 tolerated(0.07) benign(0.03) TCGA-ZF-AA4X-01 19 35842754 35842754 G A FFAR1 Silent p.L100L 0.65 TCGA-ZF-AA4X-01 19 3648672 3648672 C T PIP5K1C Missense_Mutation p.E388K 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-ZF-AA4X-01 19 36605777 36605777 C T POLR2I 5'UTR 0.07 TCGA-ZF-AA4X-01 19 37870093 37870093 G C ZNF527 Missense_Mutation p.Q35H 0.04 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA4X-01 19 37975753 37975753 G C ZNF570 Missense_Mutation p.G410A 0.09 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4X-01 19 38934788 38934788 G T RYR1 Splice_Site p.X142_splice 0.23 TCGA-ZF-AA4X-01 19 39321769 39321769 C T ECH1 Missense_Mutation p.A100T 0.27 tolerated(0.1) benign(0.006) TCGA-ZF-AA4X-01 19 40540641 40540641 G A ZNF780B Missense_Mutation p.H709Y 0.08 tolerated(1) benign(0.403) TCGA-ZF-AA4X-01 19 40540936 40540936 C T ZNF780B Silent p.E610E 0.11 TCGA-ZF-AA4X-01 19 4101065 4101065 G T MAP2K2 Silent p.L219L 0.27 TCGA-ZF-AA4X-01 19 42187773 42187773 C T CEACAM7 Missense_Mutation p.E217K 0.20 deleterious(0.01) probably_damaging(0.962) TCGA-ZF-AA4X-01 19 42796914 42796914 C T CIC Silent p.T1124T 0.48 TCGA-ZF-AA4X-01 19 43430029 43430029 G C PSG7 Missense_Mutation p.S380C 0.51 tolerated(0.17) possibly_damaging(0.819) TCGA-ZF-AA4X-01 19 44470675 44470675 G C ZNF221 Missense_Mutation p.D341H 0.53 deleterious(0.01) benign(0.33) TCGA-ZF-AA4X-01 19 45912501 45912501 G A CD3EAP Silent p.K425K 0.09 TCGA-ZF-AA4X-01 19 46195207 46195207 G C SNRPD2 5'UTR 0.14 TCGA-ZF-AA4X-01 19 46216413 46216413 C T FBXO46 Missense_Mutation p.R114Q 0.31 deleterious(0) probably_damaging(0.947) TCGA-ZF-AA4X-01 19 47422907 47422907 C G ARHGAP35 Missense_Mutation p.I325M 0.32 deleterious(0) benign(0.261) TCGA-ZF-AA4X-01 19 47492838 47492838 G A ARHGAP35 Silent p.V1314V 0.28 TCGA-ZF-AA4X-01 19 4792859 4792859 G A FEM1A Silent p.Q331Q 0.44 TCGA-ZF-AA4X-01 19 49004780 49004780 C T LMTK3 Silent p.L307L 0.33 TCGA-ZF-AA4X-01 19 49207115 49207115 G A FUT2 Missense_Mutation p.G301E 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 19 49388792 49388792 C T TULP2 Missense_Mutation p.R325K 0.28 deleterious(0) probably_damaging(0.95) TCGA-ZF-AA4X-01 19 49912476 49912476 G C CCDC155 Missense_Mutation p.R361T 0.15 tolerated(0.2) benign(0.006) TCGA-ZF-AA4X-01 19 50185280 50185280 C T PRMT1 Silent p.L102L 0.11 TCGA-ZF-AA4X-01 19 51914586 51914586 G C SIGLEC10 Missense_Mutation p.R621G 0.30 tolerated(0.2) benign(0.006) TCGA-ZF-AA4X-01 19 52705266 52705266 G C PPP2R1A Missense_Mutation p.E50Q 0.16 deleterious(0) possibly_damaging(0.524) TCGA-ZF-AA4X-01 19 53856347 53856347 G A ZNF845 Missense_Mutation p.E807K 0.06 tolerated(0.14) probably_damaging(0.985) TCGA-ZF-AA4X-01 19 55378128 55378128 G T KIR3DL2 Missense_Mutation p.R437I 0.17 deleterious(0) benign(0.443) TCGA-ZF-AA4X-01 19 55918274 55918274 C T UBE2S Silent p.V20V 0.15 TCGA-ZF-AA4X-01 19 56736502 56736502 C T ZSCAN5A Intron 0.42 TCGA-ZF-AA4X-01 19 57889442 57889442 C T ZNF547 Silent p.H366H 0.23 TCGA-ZF-AA4X-01 19 57889589 57889589 C T ZNF547 3'UTR 0.25 TCGA-ZF-AA4X-01 19 57967072 57967072 G A AC004076.9 Missense_Mutation p.S99F 0.29 deleterious_low_confidence(0.02) benign(0.011) TCGA-ZF-AA4X-01 19 58016043 58016043 G C ZNF773 Missense_Mutation p.E18Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 19 58718508 58718508 G A ZNF274 Missense_Mutation p.E226K 0.19 tolerated(0.2) benign(0.005) TCGA-ZF-AA4X-01 19 58846304 58846304 G A ZSCAN22 Missense_Mutation p.E46K 0.13 deleterious(0) possibly_damaging(0.476) TCGA-ZF-AA4X-01 19 7747484 7747484 C G TRAPPC5 Missense_Mutation p.F115L 0.08 deleterious(0) benign(0.056) TCGA-ZF-AA4X-01 19 810923 810923 G C PTBP1 3'UTR 0.27 TCGA-ZF-AA4X-01 19 8130921 8130921 C T FBN3 Missense_Mutation p.G2771E 0.18 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4X-01 19 8131097 8131097 C T FBN3 Silent p.L2712L 0.18 TCGA-ZF-AA4X-01 19 9047654 9047654 G C MUC16 Missense_Mutation p.S11326C 0.11 probably_damaging(0.917) TCGA-ZF-AA4X-01 1 107937881 107937881 G A NTNG1 Silent p.K331K 0.29 TCGA-ZF-AA4X-01 1 109514174 109514174 G A WDR47 Missense_Mutation p.P888S 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-ZF-AA4X-01 1 109779919 109779919 C T SARS Silent p.I437I 0.05 TCGA-ZF-AA4X-01 1 111441840 111441840 G A CD53 3'UTR 0.09 TCGA-ZF-AA4X-01 1 11168235 11168235 C T MTOR Intron 0.37 TCGA-ZF-AA4X-01 1 112998804 112998804 G A CTTNBP2NL Silent p.Q230Q 0.17 TCGA-ZF-AA4X-01 1 115153721 115153721 C T DENND2C Missense_Mutation p.E448K 0.27 deleterious(0) benign(0.409) TCGA-ZF-AA4X-01 1 117529654 117529654 G A PTGFRN 3'UTR 0.10 TCGA-ZF-AA4X-01 1 117663604 117663604 C T TRIM45 Missense_Mutation p.E74K 0.27 tolerated(0.1) benign(0.04) TCGA-ZF-AA4X-01 1 117663656 117663656 C T TRIM45 Silent p.L56L 0.26 TCGA-ZF-AA4X-01 1 118165941 118165941 C T FAM46C Missense_Mutation p.R151C 0.24 tolerated(0.11) probably_damaging(0.998) TCGA-ZF-AA4X-01 1 118501966 118501966 G A WDR3 Missense_Mutation p.E910K 0.28 deleterious(0) possibly_damaging(0.813) TCGA-ZF-AA4X-01 1 119929319 119929319 G A HAO2 Silent p.Q212Q 0.08 TCGA-ZF-AA4X-01 1 12855769 12855769 C T PRAMEF1 Missense_Mutation p.S350F 0.32 deleterious(0) benign(0.198) TCGA-ZF-AA4X-01 1 12907902 12907902 C G HNRNPCL1 Missense_Mutation p.D81H 0.13 deleterious(0) possibly_damaging(0.477) TCGA-ZF-AA4X-01 1 1333715 1333715 G T CCNL2 Nonsense_Mutation p.S124* 0.16 TCGA-ZF-AA4X-01 1 142713164 142713164 C A RP11-417J8.6 RNA 0.26 TCGA-ZF-AA4X-01 1 145039606 145039606 C A PDE4DIP Nonsense_Mutation p.E2* 0.15 TCGA-ZF-AA4X-01 1 149858166 149858166 G C HIST2H2BE Missense_Mutation p.P9A 0.18 tolerated_low_confidence(0.09) unknown(0) TCGA-ZF-AA4X-01 1 150039808 150039808 G A VPS45 5'UTR 0.29 TCGA-ZF-AA4X-01 1 150974656 150974656 G A FAM63A Silent p.L194L 0.30 TCGA-ZF-AA4X-01 1 151497155 151497155 G C CGN Silent p.L469L 0.19 TCGA-ZF-AA4X-01 1 152278716 152278716 C T FLG Silent p.R2882R 0.15 TCGA-ZF-AA4X-01 1 153028910 153028910 G C SPRR2A 3'UTR 0.83 TCGA-ZF-AA4X-01 1 153752320 153752320 G C SLC27A3 Missense_Mutation p.E679Q 0.07 deleterious(0.04) benign(0.177) TCGA-ZF-AA4X-01 1 153752356 153752356 G C SLC27A3 Missense_Mutation p.E691Q 0.07 tolerated(0.07) probably_damaging(0.997) TCGA-ZF-AA4X-01 1 153792177 153792177 C G GATAD2B Missense_Mutation p.D124H 0.04 deleterious(0) possibly_damaging(0.874) TCGA-ZF-AA4X-01 1 153955961 153955961 C T RAB13 Intron 0.14 TCGA-ZF-AA4X-01 1 155165787 155165787 G A THBS3 Nonsense_Mutation p.R935* 0.58 TCGA-ZF-AA4X-01 1 155629762 155629762 C T YY1AP1 Missense_Mutation p.D785N 0.11 tolerated_low_confidence(0.35) benign(0.005) TCGA-ZF-AA4X-01 1 155630472 155630472 G A YY1AP1 Missense_Mutation p.S548L 0.06 tolerated_low_confidence(0.07) benign(0.17) TCGA-ZF-AA4X-01 1 155735084 155735084 G A GON4L Nonsense_Mutation p.Q1394* 0.22 TCGA-ZF-AA4X-01 1 155735905 155735905 G C GON4L Nonsense_Mutation p.S1120* 0.30 TCGA-ZF-AA4X-01 1 156453070 156453070 C A MEF2D Missense_Mutation p.K5N 0.22 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 1 156843555 156843555 C T NTRK1 Silent p.F327F 0.18 TCGA-ZF-AA4X-01 1 159176166 159176166 C T DARC Missense_Mutation p.R315C 0.06 deleterious(0) probably_damaging(0.939) TCGA-ZF-AA4X-01 1 159558316 159558316 G A APCS Missense_Mutation p.D164N 0.23 tolerated(0.05) benign(0.057) TCGA-ZF-AA4X-01 1 160165315 160165315 C T CASQ1 Silent p.F214F 0.30 TCGA-ZF-AA4X-01 1 160167377 160167377 G T CASQ1 Silent p.L267L 0.07 TCGA-ZF-AA4X-01 1 160846545 160846545 G T ITLN1 Missense_Mutation p.S284Y 0.57 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 1 161696657 161696657 G C FCRLB Missense_Mutation p.D247H 0.38 deleterious(0.02) benign(0.413) TCGA-ZF-AA4X-01 1 16257320 16257320 C T SPEN Missense_Mutation p.R1529C 0.07 probably_damaging(0.997) TCGA-ZF-AA4X-01 1 16375632 16375632 G A CLCNKB Missense_Mutation p.E225K 0.18 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4X-01 1 165624623 165624623 G A MGST3 Missense_Mutation p.R114Q 0.26 tolerated(0.1) benign(0.168) TCGA-ZF-AA4X-01 1 167960533 167960533 C T DCAF6 Missense_Mutation p.S215L 0.22 deleterious(0.04) probably_damaging(0.974) TCGA-ZF-AA4X-01 1 170024540 170024540 C G KIFAP3 Missense_Mutation p.E24Q 0.30 tolerated(0.13) benign(0.295) TCGA-ZF-AA4X-01 1 171086525 171086525 G C FMO3 Missense_Mutation p.W514C 0.24 tolerated(0.06) benign(0.033) TCGA-ZF-AA4X-01 1 180017752 180017752 G C CEP350 Missense_Mutation p.K1568N 0.57 benign(0.049) TCGA-ZF-AA4X-01 1 19166384 19166384 G A TAS1R2 Silent p.F743F 0.72 TCGA-ZF-AA4X-01 1 19166678 19166678 G C TAS1R2 Missense_Mutation p.I645M 0.41 deleterious(0.02) probably_damaging(0.964) TCGA-ZF-AA4X-01 1 196748485 196748485 C T CFHR3 Silent p.L84L 0.36 TCGA-ZF-AA4X-01 1 196883771 196883771 G A CFHR4 Missense_Mutation p.D442N 0.21 tolerated(0.74) benign(0.231) TCGA-ZF-AA4X-01 1 200017770 200017770 G C NR5A2 Missense_Mutation p.E312Q 0.12 deleterious(0.01) possibly_damaging(0.668) TCGA-ZF-AA4X-01 1 200522875 200522875 G C KIF14 Missense_Mutation p.L1530V 0.26 tolerated(0.99) benign(0.025) TCGA-ZF-AA4X-01 1 201120971 201120971 C G TMEM9 Missense_Mutation p.D26H 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 1 201981500 201981500 G C ELF3 Missense_Mutation p.W138C 0.29 tolerated(0.14) probably_damaging(0.999) TCGA-ZF-AA4X-01 1 204379683 204379683 G A PPP1R15B Missense_Mutation p.S286F 0.23 deleterious(0) probably_damaging(0.983) TCGA-ZF-AA4X-01 1 204401446 204401446 G C PIK3C2B Nonsense_Mutation p.S1346* 0.19 TCGA-ZF-AA4X-01 1 212550967 212550967 G T TMEM206 Silent p.V301V 0.09 TCGA-ZF-AA4X-01 1 21268330 21268330 C T EIF4G3 Silent p.L389L 0.20 TCGA-ZF-AA4X-01 1 218578611 218578611 C T TGFB2 Silent p.F177F 0.10 TCGA-ZF-AA4X-01 1 226465500 226465500 G C LIN9 Missense_Mutation p.L236V 0.05 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 1 233161125 233161125 C G PCNXL2 Missense_Mutation p.E1458Q 0.28 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 1 235345314 235345314 C T ARID4B Missense_Mutation p.E974K 0.12 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-ZF-AA4X-01 1 23688704 23688704 C T ZNF436 Missense_Mutation p.E391K 0.20 tolerated(0.77) possibly_damaging(0.874) TCGA-ZF-AA4X-01 1 23689568 23689568 C T ZNF436 Missense_Mutation p.E103K 0.20 tolerated(0.12) benign(0.03) TCGA-ZF-AA4X-01 1 23689604 23689604 C G ZNF436 Missense_Mutation p.E91Q 0.20 tolerated(0.21) possibly_damaging(0.727) TCGA-ZF-AA4X-01 1 240072138 240072138 C T CHRM3 Silent p.L463L 0.27 TCGA-ZF-AA4X-01 1 241946630 241946630 C A WDR64 Silent p.I874I 0.28 TCGA-ZF-AA4X-01 1 24200962 24200962 C G CNR2 3'UTR 0.23 TCGA-ZF-AA4X-01 1 247048847 247048848 - T AHCTF1 Frame_Shift_Ins p.V879Sfs*5 0.31 TCGA-ZF-AA4X-01 1 248436323 248436323 G A OR2T33 Missense_Mutation p.S265F 0.13 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA4X-01 1 26570715 26570715 C G CEP85 Missense_Mutation p.I38M 0.42 deleterious(0.01) benign(0.299) TCGA-ZF-AA4X-01 1 27087570 27087570 C T ARID1A Missense_Mutation p.S715L 0.33 unknown(0) TCGA-ZF-AA4X-01 1 27094347 27094347 G T ARID1A Nonsense_Mutation p.E1019* 0.17 TCGA-ZF-AA4X-01 1 32257986 32257986 C G SPOCD1 Missense_Mutation p.R931T 0.32 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4X-01 1 33236670 33236670 C G KIAA1522 Silent p.L630L 0.61 TCGA-ZF-AA4X-01 1 33238536 33238536 C T KIAA1522 3'UTR 0.09 TCGA-ZF-AA4X-01 1 3328121 3328121 G T PRDM16 Missense_Mutation p.G454C 0.34 deleterious(0) probably_damaging(0.933) TCGA-ZF-AA4X-01 1 35853176 35853176 C T ZMYM4 Missense_Mutation p.S745L 0.09 deleterious(0.01) possibly_damaging(0.864) TCGA-ZF-AA4X-01 1 36521290 36521290 C G AGO3 Missense_Mutation p.L843V 0.21 tolerated(0.11) possibly_damaging(0.507) TCGA-ZF-AA4X-01 1 38445202 38445202 C G SF3A3 Missense_Mutation p.E232Q 0.18 tolerated(0.15) benign(0.375) TCGA-ZF-AA4X-01 1 39919379 39919379 G C MACF1 Missense_Mutation p.E4856Q 0.06 possibly_damaging(0.72) TCGA-ZF-AA4X-01 1 40705350 40705350 C T RLF Missense_Mutation p.S1659L 0.59 tolerated(0.31) benign(0) TCGA-ZF-AA4X-01 1 43913784 43913784 G A SZT2 Missense_Mutation p.E3143K 0.31 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 1 45293233 45293233 C A PTCH2 Nonsense_Mutation p.E738* 0.10 TCGA-ZF-AA4X-01 1 47728780 47728780 G C STIL Missense_Mutation p.S875C 0.30 deleterious(0.02) benign(0.103) TCGA-ZF-AA4X-01 1 52271216 52271216 G C NRD1 Missense_Mutation p.L778V 0.26 deleterious(0.01) benign(0.378) TCGA-ZF-AA4X-01 1 52703987 52703987 C G ZFYVE9 Missense_Mutation p.P300A 0.24 tolerated_low_confidence(0.18) benign(0.001) TCGA-ZF-AA4X-01 1 52849199 52849199 G C ORC1 Missense_Mutation p.L636V 0.29 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA4X-01 1 53163960 53163960 G C COA7 Silent p.V13V 0.11 TCGA-ZF-AA4X-01 1 54554418 54554418 G A TCEANC2 Silent p.L131L 0.25 TCGA-ZF-AA4X-01 1 57002784 57002784 G A PPAP2B Missense_Mutation p.A47V 0.20 tolerated(0.16) benign(0.014) TCGA-ZF-AA4X-01 1 63024717 63024717 G C DOCK7 Missense_Mutation p.L792V 0.30 tolerated(1) benign(0.001) TCGA-ZF-AA4X-01 1 64125289 64125289 G A PGM1 Silent p.L562L 0.25 TCGA-ZF-AA4X-01 1 67242036 67242036 G C TCTEX1D1 Missense_Mutation p.E96Q 0.05 tolerated(0.13) possibly_damaging(0.507) TCGA-ZF-AA4X-01 1 70478656 70478656 G A LRRC7 Splice_Site p.X341_splice 0.06 TCGA-ZF-AA4X-01 1 75596433 75596433 G C LHX8 Intron 0.33 TCGA-ZF-AA4X-01 1 76288233 76288233 C G MSH4 Missense_Mutation p.Q377E 0.18 tolerated(0.5) benign(0.002) TCGA-ZF-AA4X-01 1 76378596 76378596 A G MSH4 3'UTR 0.25 TCGA-ZF-AA4X-01 1 8000091 8000091 G A TNFRSF9 5'UTR 0.27 TCGA-ZF-AA4X-01 1 84373315 84373315 G A TTLL7 Missense_Mutation p.R606W 0.16 deleterious(0) possibly_damaging(0.836) TCGA-ZF-AA4X-01 1 87045738 87045738 G T CLCA4 Nonsense_Mutation p.E824* 0.20 TCGA-ZF-AA4X-01 20 13107262 13107262 C T SPTLC3 Missense_Mutation p.H393Y 0.10 tolerated(0.35) possibly_damaging(0.794) TCGA-ZF-AA4X-01 20 17934671 17934671 C T SNX5 Missense_Mutation p.E120K 0.07 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA4X-01 20 18297015 18297015 C G ZNF133 Nonsense_Mutation p.S506* 0.42 TCGA-ZF-AA4X-01 20 3128525 3128525 G C FASTKD5 Missense_Mutation p.L398V 0.56 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4X-01 20 35854188 35854188 G C RPN2 Missense_Mutation p.E428Q 0.16 tolerated(0.41) probably_damaging(0.948) TCGA-ZF-AA4X-01 20 36974918 36974918 G C LBP 5'UTR 0.16 TCGA-ZF-AA4X-01 20 37209989 37209989 C T ADIG Silent p.I32I 0.16 TCGA-ZF-AA4X-01 20 40980872 40980872 C T PTPRT Silent p.Q538Q 0.08 TCGA-ZF-AA4X-01 20 43994261 43994261 C T SYS1 Silent p.I55I 0.23 TCGA-ZF-AA4X-01 20 44578141 44578141 C T ZNF335 Missense_Mutation p.E1246K 0.39 deleterious(0) benign(0.119) TCGA-ZF-AA4X-01 20 44598196 44598196 G A ZNF335 Silent p.L112L 0.09 TCGA-ZF-AA4X-01 20 44693770 44693770 C G NCOA5 Missense_Mutation p.E243Q 0.19 tolerated(0.17) probably_damaging(0.91) TCGA-ZF-AA4X-01 20 49212019 49212019 G C FAM65C Nonsense_Mutation p.S642* 0.30 TCGA-ZF-AA4X-01 20 60427878 60427878 C T CDH4 Silent p.V267V 0.24 TCGA-ZF-AA4X-01 20 61299107 61299107 G A SLCO4A1 Missense_Mutation p.E495K 0.22 tolerated(0.63) benign(0.036) TCGA-ZF-AA4X-01 20 62421739 62421739 G A ZBTB46 Silent p.F124F 0.22 TCGA-ZF-AA4X-01 20 6759460 6759460 C T BMP2 Silent p.F305F 0.25 TCGA-ZF-AA4X-01 20 9496689 9496689 G A LAMP5 Missense_Mutation p.E94K 0.30 tolerated(0.1) possibly_damaging(0.755) TCGA-ZF-AA4X-01 21 11038943 11038943 G A BAGE2 RNA 0.04 TCGA-ZF-AA4X-01 21 30961227 30961227 C T GRIK1 Missense_Mutation p.D501N 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4X-01 21 32582457 32582457 G A TIAM1 Silent p.F764F 0.23 TCGA-ZF-AA4X-01 21 34900617 34900617 C T GART Missense_Mutation p.D308N 0.11 deleterious(0.03) probably_damaging(1) TCGA-ZF-AA4X-01 21 42780032 42780032 C T MX2 Missense_Mutation p.R674C 0.17 deleterious(0.03) possibly_damaging(0.744) TCGA-ZF-AA4X-01 21 43982268 43982268 C T SLC37A1 Silent p.I354I 0.41 TCGA-ZF-AA4X-01 21 47320509 47320509 G A PCBP3 Missense_Mutation p.G65E 0.13 deleterious(0) possibly_damaging(0.86) TCGA-ZF-AA4X-01 21 47831535 47831535 G A PCNT Missense_Mutation p.E1850K 0.12 benign(0) TCGA-ZF-AA4X-01 22 18028057 18028057 C T CECR2 Missense_Mutation p.S1006L 0.35 tolerated_low_confidence(0.14) benign(0.006) TCGA-ZF-AA4X-01 22 19438233 19438233 C G UFD1L Missense_Mutation p.G295A 0.12 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4X-01 22 20759741 20759741 G T ZNF74 Nonsense_Mutation p.E140* 0.12 TCGA-ZF-AA4X-01 22 21161726 21161726 G C PI4KA Silent p.L364L 0.09 TCGA-ZF-AA4X-01 22 32009350 32009350 C T SFI1 Missense_Mutation p.T859M 0.20 deleterious(0) possibly_damaging(0.868) TCGA-ZF-AA4X-01 22 32587287 32587287 G A RFPL2 Silent p.D203D 0.49 TCGA-ZF-AA4X-01 22 36537616 36537616 G C APOL3 Missense_Mutation p.L281V 0.25 tolerated(0.55) benign(0.033) TCGA-ZF-AA4X-01 22 38051603 38051603 G A SH3BP1 Missense_Mutation p.G673E 0.62 tolerated_low_confidence(0.1) unknown(0) TCGA-ZF-AA4X-01 22 41783604 41783604 C G TEF Missense_Mutation p.S136C 0.15 tolerated(0.07) possibly_damaging(0.592) TCGA-ZF-AA4X-01 22 46654033 46654033 G C PKDREJ Silent p.V1729V 0.18 TCGA-ZF-AA4X-01 22 50655762 50655762 C T SELO Silent p.L658L 0.46 TCGA-ZF-AA4X-01 2 101598738 101598738 G C NPAS2 Missense_Mutation p.E510Q 0.12 tolerated(0.08) probably_damaging(0.999) TCGA-ZF-AA4X-01 2 103431204 103431204 C T TMEM182 Intron 0.16 TCGA-ZF-AA4X-01 2 112786132 112786132 C G MERTK Missense_Mutation p.I897M 0.41 tolerated(0.08) benign(0.162) TCGA-ZF-AA4X-01 2 119604286 119604286 C G EN1 Missense_Mutation p.R153T 0.16 deleterious(0) benign(0.097) TCGA-ZF-AA4X-01 2 128903400 128903400 G A UGGT1 Silent p.Q625Q 0.38 TCGA-ZF-AA4X-01 2 135170580 135170580 G A MGAT5 Silent p.L557L 0.07 TCGA-ZF-AA4X-01 2 14774168 14774168 C T FAM84A Missense_Mutation p.S22L 0.16 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA4X-01 2 149864527 149864527 G A KIF5C Silent p.Q832Q 0.14 TCGA-ZF-AA4X-01 2 16734264 16734264 G A FAM49A Silent p.F304F 0.22 TCGA-ZF-AA4X-01 2 168114866 168114866 C G XIRP2 3'UTR 0.28 TCGA-ZF-AA4X-01 2 17692211 17692211 G T RAD51AP2 Missense_Mutation p.P1114T 0.09 deleterious(0.01) benign(0.023) TCGA-ZF-AA4X-01 2 17699362 17699362 G C RAD51AP2 Silent p.L107L 0.26 TCGA-ZF-AA4X-01 2 179542528 179542528 G A TTN Silent p.L11371L 0.05 TCGA-ZF-AA4X-01 2 179639767 179639767 G A TTN Missense_Mutation p.S2224F 0.09 TCGA-ZF-AA4X-01 2 183806840 183806840 C G NCKAP1 Missense_Mutation p.D891H 0.35 deleterious(0.03) benign(0.039) TCGA-ZF-AA4X-01 2 185801421 185801421 G C ZNF804A Missense_Mutation p.R433T 0.13 deleterious(0) benign(0.008) TCGA-ZF-AA4X-01 2 190719275 190719275 C G PMS1 Missense_Mutation p.S426C 0.26 tolerated(0.08) benign(0.031) TCGA-ZF-AA4X-01 2 191353439 191353439 C T MFSD6 Missense_Mutation p.P563S 0.36 tolerated(0.08) probably_damaging(0.97) TCGA-ZF-AA4X-01 2 192273788 192273788 G A MYO1B Missense_Mutation p.E884K 0.20 tolerated(0.73) benign(0.027) TCGA-ZF-AA4X-01 2 196698976 196698976 A G DNAH7 Silent p.P3018P 0.45 TCGA-ZF-AA4X-01 2 202122910 202122910 C G CASP8 5'UTR 0.21 TCGA-ZF-AA4X-01 2 206980924 206980924 C G AC007383.4 RNA 0.19 TCGA-ZF-AA4X-01 2 209189749 209189749 C T PIKFYVE Nonsense_Mutation p.Q816* 0.28 TCGA-ZF-AA4X-01 2 219341649 219341649 C T USP37 Missense_Mutation p.E653K 0.40 tolerated(0.06) benign(0.428) TCGA-ZF-AA4X-01 2 219506891 219506891 G A ZNF142 Missense_Mutation p.R1450C 0.28 tolerated(0.1) possibly_damaging(0.689) TCGA-ZF-AA4X-01 2 220113198 220113198 C T STK16 Nonsense_Mutation p.Q279* 0.07 TCGA-ZF-AA4X-01 2 220161704 220161704 C T PTPRN Intron 0.12 TCGA-ZF-AA4X-01 2 223158954 223158954 T C PAX3 Missense_Mutation p.E173G 0.07 tolerated(0.23) benign(0.073) TCGA-ZF-AA4X-01 2 231081540 231081540 C T SP110 Missense_Mutation p.E35K 0.47 deleterious(0.04) possibly_damaging(0.486) TCGA-ZF-AA4X-01 2 231974050 231974050 C T HTR2B Silent p.L209L 0.33 TCGA-ZF-AA4X-01 2 232143160 232143160 G A ARMC9 Missense_Mutation p.E514K 0.08 deleterious(0) probably_damaging(0.957) TCGA-ZF-AA4X-01 2 234526407 234526407 G C UGT1A8 Silent p.L18L 0.17 TCGA-ZF-AA4X-01 2 242282404 242282404 C T SEPT2 Intron 0.55 TCGA-ZF-AA4X-01 2 24285948 24285948 G A FKBP1B Silent p.Q71Q 0.26 TCGA-ZF-AA4X-01 2 24471552 24471552 C T ITSN2 Silent p.Q1078Q 0.24 TCGA-ZF-AA4X-01 2 25016333 25016333 G C CENPO 5'UTR 0.23 TCGA-ZF-AA4X-01 2 25994351 25994351 G A ASXL2 Silent p.V154V 0.28 TCGA-ZF-AA4X-01 2 26609375 26609375 C T EPT1 Silent p.L356L 0.27 TCGA-ZF-AA4X-01 2 27800638 27800638 C T C2orf16 Missense_Mutation p.P400L 0.22 tolerated(0.18) benign(0.013) TCGA-ZF-AA4X-01 2 29293647 29293647 C T C2orf71 Missense_Mutation p.E1161K 0.53 tolerated(0.15) benign(0.019) TCGA-ZF-AA4X-01 2 32724726 32724726 G A BIRC6 Missense_Mutation p.E2861K 0.17 probably_damaging(0.986) TCGA-ZF-AA4X-01 2 38201307 38201307 G A RMDN2 Missense_Mutation p.E371K 0.17 tolerated(0.07) possibly_damaging(0.455) TCGA-ZF-AA4X-01 2 55200745 55200745 G A RTN4 Missense_Mutation p.H1164Y 0.60 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 2 71218973 71218973 G A TEX261 Silent p.F97F 0.29 TCGA-ZF-AA4X-01 2 73476281 73476281 G A CCT7 Missense_Mutation p.E316K 0.24 tolerated(0.24) benign(0.04) TCGA-ZF-AA4X-01 2 73476292 73476292 G A CCT7 Silent p.L319L 0.29 TCGA-ZF-AA4X-01 2 89442254 89442254 T C IGKV3-20 Missense_Mutation p.S51G 0.18 tolerated(0.12) benign(0.012) TCGA-ZF-AA4X-01 3 10191496 10191496 C T VHL Silent p.L163L 0.11 TCGA-ZF-AA4X-01 3 108272523 108272523 C T KIAA1524 Silent p.Q793Q 0.08 TCGA-ZF-AA4X-01 3 111831932 111831932 G A C3orf52 Intron 0.19 TCGA-ZF-AA4X-01 3 112324227 112324227 G A CCDC80 3'UTR 0.12 TCGA-ZF-AA4X-01 3 112324401 112324401 G A CCDC80 Nonsense_Mutation p.Q906* 0.17 TCGA-ZF-AA4X-01 3 121825277 121825277 G A CD86 Silent p.T211T 0.19 TCGA-ZF-AA4X-01 3 12195152 12195152 C G TIMP4 Missense_Mutation p.D180H 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 3 122928213 122928213 G A SEC22A Missense_Mutation p.R50K 0.22 deleterious(0.03) possibly_damaging(0.773) TCGA-ZF-AA4X-01 3 123987800 123987800 G A KALRN Missense_Mutation p.E221K 0.12 tolerated(0.19) possibly_damaging(0.856) TCGA-ZF-AA4X-01 3 127396314 127396314 C A ABTB1 Missense_Mutation p.L257I 0.27 tolerated(0.08) benign(0.045) TCGA-ZF-AA4X-01 3 130282006 130282006 G C COL6A6 Missense_Mutation p.M53I 0.34 tolerated(0.37) benign(0.033) TCGA-ZF-AA4X-01 3 134322838 134322838 C T KY Silent p.L523L 0.35 TCGA-ZF-AA4X-01 3 13670762 13670762 C T FBLN2 Nonsense_Mutation p.Q938* 0.42 TCGA-ZF-AA4X-01 3 138289202 138289202 C T CEP70 Silent p.Q141Q 0.13 TCGA-ZF-AA4X-01 3 140123434 140123434 G A CLSTN2 Missense_Mutation p.E155K 0.13 deleterious(0.02) probably_damaging(0.942) TCGA-ZF-AA4X-01 3 141671484 141671484 G T TFDP2 Missense_Mutation p.F404L 0.39 tolerated_low_confidence(0.54) benign(0) TCGA-ZF-AA4X-01 3 157082155 157082155 G C VEPH1 Missense_Mutation p.S425C 0.21 deleterious(0) probably_damaging(0.947) TCGA-ZF-AA4X-01 3 158310367 158310367 G C MLF1 Missense_Mutation p.L80F 0.55 tolerated(0.23) benign(0.139) TCGA-ZF-AA4X-01 3 160804206 160804206 G C B3GALNT1 Missense_Mutation p.L113V 0.40 tolerated(0.32) possibly_damaging(0.493) TCGA-ZF-AA4X-01 3 16216729 16216729 G C GALNT15 Missense_Mutation p.G24A 0.12 tolerated_low_confidence(0.11) benign(0.044) TCGA-ZF-AA4X-01 3 169644891 169644891 G A SAMD7 Missense_Mutation p.E281K 0.26 tolerated(1) benign(0.001) TCGA-ZF-AA4X-01 3 170201144 170201144 C T SLC7A14 Silent p.P358P 0.07 TCGA-ZF-AA4X-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.44 deleterious(0.04) probably_damaging(0.96) TCGA-ZF-AA4X-01 3 180320690 180320690 G C TTC14 Missense_Mutation p.R58T 0.17 tolerated(0.23) benign(0.024) TCGA-ZF-AA4X-01 3 183862433 183862433 C G EIF2B5 Missense_Mutation p.L682V 0.34 deleterious(0.03) possibly_damaging(0.767) TCGA-ZF-AA4X-01 3 184026294 184026294 G A PSMD2 Missense_Mutation p.R828Q 0.07 deleterious(0.03) possibly_damaging(0.893) TCGA-ZF-AA4X-01 3 184049736 184049736 G T EIF4G1 Nonsense_Mutation p.E1501* 0.13 TCGA-ZF-AA4X-01 3 185906061 185906061 C T DGKG Silent p.K675K 0.06 TCGA-ZF-AA4X-01 3 185906165 185906165 C G DGKG Missense_Mutation p.D641H 0.06 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA4X-01 3 186459770 186459770 G A KNG1 Missense_Mutation p.E529K 0.41 deleterious(0.01) benign(0.265) TCGA-ZF-AA4X-01 3 187444625 187444625 C T BCL6 Silent p.K534K 0.22 TCGA-ZF-AA4X-01 3 191888297 191888297 C G FGF12 Missense_Mutation p.R188T 0.37 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA4X-01 3 193355756 193355756 G A OPA1 Missense_Mutation p.D333N 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 3 19559528 19559528 G C KCNH8 Missense_Mutation p.E861Q 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-ZF-AA4X-01 3 197562564 197562564 G C LRCH3 Missense_Mutation p.Q374H 0.06 tolerated(0.06) probably_damaging(0.997) TCGA-ZF-AA4X-01 3 197562592 197562592 G T LRCH3 Nonsense_Mutation p.E384* 0.08 TCGA-ZF-AA4X-01 3 197562607 197562607 G A LRCH3 Missense_Mutation p.E389K 0.06 tolerated(0.06) benign(0.117) TCGA-ZF-AA4X-01 3 23942314 23942314 G C NKIRAS1 Missense_Mutation p.F107L 0.25 tolerated(0.65) benign(0.004) TCGA-ZF-AA4X-01 3 24164551 24164551 C T THRB Missense_Mutation p.E404K 0.10 tolerated(1) benign(0.103) TCGA-ZF-AA4X-01 3 27450851 27450851 C G SLC4A7 Missense_Mutation p.R637T 0.03 tolerated(0.1) benign(0.142) TCGA-ZF-AA4X-01 3 37090079 37090079 C T MLH1 Silent p.F656F 0.19 TCGA-ZF-AA4X-01 3 38888929 38888929 G A SCN11A Silent p.L1544L 0.17 TCGA-ZF-AA4X-01 3 38926821 38926821 C G SCN11A Missense_Mutation p.E1008Q 0.19 tolerated(0.08) possibly_damaging(0.521) TCGA-ZF-AA4X-01 3 39126135 39126135 G A WDR48 Splice_Site p.X428_splice 0.20 TCGA-ZF-AA4X-01 3 42573310 42573310 C A VIPR1 Silent p.I289I 0.11 TCGA-ZF-AA4X-01 3 44434460 44434460 C G TCAIM Nonsense_Mutation p.S229* 0.08 TCGA-ZF-AA4X-01 3 44612629 44612629 C G ZKSCAN7 Missense_Mutation p.S676C 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 3 44636369 44636369 C G ZNF660 Missense_Mutation p.I228M 0.46 deleterious(0.04) possibly_damaging(0.504) TCGA-ZF-AA4X-01 3 47098382 47098382 G C SETD2 Missense_Mutation p.Q2298E 0.15 deleterious(0.02) benign(0.137) TCGA-ZF-AA4X-01 3 47894681 47894681 C G MAP4 Missense_Mutation p.Q1141H 0.33 deleterious(0) possibly_damaging(0.542) TCGA-ZF-AA4X-01 3 48475257 48475257 G C CCDC51 Missense_Mutation p.R113G 0.20 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA4X-01 3 48605140 48605140 C T COL7A1 Intron 0.14 TCGA-ZF-AA4X-01 3 48699981 48699981 G A CELSR3 Silent p.L29L 0.10 TCGA-ZF-AA4X-01 3 49249231 49249231 G C CCDC36 Missense_Mutation p.W6C 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 3 49314082 49314082 G A C3orf62 Missense_Mutation p.S75F 0.25 tolerated(0.32) benign(0.246) TCGA-ZF-AA4X-01 3 49941097 49941097 G A MST1R 5'Flank 0.24 TCGA-ZF-AA4X-01 3 50336726 50336726 C T NAT6 5'UTR 0.28 TCGA-ZF-AA4X-01 3 51663375 51663375 G C RAD54L2 Missense_Mutation p.E123Q 0.56 deleterious(0.01) probably_damaging(0.972) TCGA-ZF-AA4X-01 3 52473737 52473737 C T SEMA3G Missense_Mutation p.E476K 0.14 tolerated(0.29) benign(0.008) TCGA-ZF-AA4X-01 3 56683046 56683046 G T FAM208A Missense_Mutation p.L470I 0.12 deleterious(0) probably_damaging(0.933) TCGA-ZF-AA4X-01 3 62464012 62464012 C T CADPS Missense_Mutation p.E1085K 0.12 deleterious(0) benign(0.292) TCGA-ZF-AA4X-01 3 66436601 66436601 C T LRIG1 Silent p.K531K 0.07 TCGA-ZF-AA4X-01 3 67058729 67058729 G A KBTBD8 Missense_Mutation p.D576N 0.27 tolerated(0.05) benign(0.258) TCGA-ZF-AA4X-01 3 74316446 74316446 C T CNTN3 Missense_Mutation p.E930K 0.10 deleterious(0.01) benign(0.29) TCGA-ZF-AA4X-01 3 79639059 79639059 C A ROBO1 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0) TCGA-ZF-AA4X-01 3 9512588 9512588 C T SETD5 Missense_Mutation p.P1057L 0.24 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 3 97744472 97744472 C T GABRR3 RNA 0.11 TCGA-ZF-AA4X-01 3 98531196 98531196 C T DCBLD2 Missense_Mutation p.G448E 0.10 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 4 106600366 106600366 C T ARHGEF38 3'UTR 0.16 TCGA-ZF-AA4X-01 4 108816809 108816809 G C SGMS2 Missense_Mutation p.E34Q 0.52 tolerated(0.54) benign(0.028) TCGA-ZF-AA4X-01 4 109745335 109745335 C T COL25A1 Missense_Mutation p.E614K 0.31 tolerated(0.84) benign(0.376) TCGA-ZF-AA4X-01 4 126238227 126238227 G C FAT4 Missense_Mutation p.E221Q 0.32 benign(0.034) TCGA-ZF-AA4X-01 4 141578823 141578823 C G TBC1D9 Missense_Mutation p.E689Q 0.27 tolerated(0.07) probably_damaging(0.998) TCGA-ZF-AA4X-01 4 16587581 16587581 C A LDB2 Missense_Mutation p.R193S 0.07 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA4X-01 4 1920005 1920005 C G WHSC1 Silent p.L355L 0.16 TCGA-ZF-AA4X-01 4 40752914 40752914 C G NSUN7 Missense_Mutation p.I68M 0.31 deleterious(0) possibly_damaging(0.458) TCGA-ZF-AA4X-01 4 47562975 47562975 G A ATP10D Missense_Mutation p.D851N 0.25 deleterious(0.02) benign(0.35) TCGA-ZF-AA4X-01 4 5564795 5564795 G T EVC2 Missense_Mutation p.S1236Y 0.11 tolerated(1) possibly_damaging(0.553) TCGA-ZF-AA4X-01 4 68490876 68490876 C G UBA6 Missense_Mutation p.E850Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 4 77949871 77949871 G A SEPT11 Missense_Mutation p.R348K 0.07 tolerated(0.75) benign(0.147) TCGA-ZF-AA4X-01 4 79173662 79173662 C A FRAS1 Missense_Mutation p.F142L 0.22 benign(0.008) TCGA-ZF-AA4X-01 4 90034402 90034402 G A TIGD2 Missense_Mutation p.D93N 0.23 tolerated(0.07) benign(0.005) TCGA-ZF-AA4X-01 4 96106200 96106200 G A UNC5C Nonsense_Mutation p.Q762* 0.26 TCGA-ZF-AA4X-01 5 106763185 106763185 C T EFNA5 Missense_Mutation p.D51N 0.47 deleterious(0) probably_damaging(0.966) TCGA-ZF-AA4X-01 5 112418590 112418590 C G MCC Missense_Mutation p.R584T 0.21 deleterious(0.01) probably_damaging(0.974) TCGA-ZF-AA4X-01 5 11346602 11346602 G A CTNND2 Nonsense_Mutation p.R504* 0.34 TCGA-ZF-AA4X-01 5 123983364 123983364 C G ZNF608 Missense_Mutation p.E905Q 0.37 deleterious(0.01) possibly_damaging(0.456) TCGA-ZF-AA4X-01 5 130846112 130846112 C T RAPGEF6 Missense_Mutation p.E234K 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-ZF-AA4X-01 5 133685949 133685949 G C CDKL3 Missense_Mutation p.S177C 0.56 deleterious(0.01) probably_damaging(0.918) TCGA-ZF-AA4X-01 5 139909042 139909042 C G ANKHD1 Missense_Mutation p.Q2171E 0.20 possibly_damaging(0.535) TCGA-ZF-AA4X-01 5 147781542 147781542 C G FBXO38 Intron 0.12 TCGA-ZF-AA4X-01 5 149276282 149276282 C T PDE6A Missense_Mutation p.E489K 0.08 tolerated(1) benign(0.051) TCGA-ZF-AA4X-01 5 149755689 149755689 G C TCOF1 Missense_Mutation p.K646N 0.12 tolerated(0.08) possibly_damaging(0.87) TCGA-ZF-AA4X-01 5 156820036 156820036 G A CYFIP2 3'UTR 0.21 TCGA-ZF-AA4X-01 5 159680685 159680685 G A CCNJL Silent p.L336L 0.31 TCGA-ZF-AA4X-01 5 159686591 159686591 C A CCNJL Missense_Mutation p.L204F 0.06 tolerated(0.7) benign(0.024) TCGA-ZF-AA4X-01 5 159833600 159833600 C T SLU7 Missense_Mutation p.E388K 0.14 deleterious(0.02) possibly_damaging(0.783) TCGA-ZF-AA4X-01 5 159834611 159834611 C T SLU7 Missense_Mutation p.E333K 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-ZF-AA4X-01 5 159834982 159834982 C G SLU7 Missense_Mutation p.D305H 0.09 deleterious(0.01) possibly_damaging(0.764) TCGA-ZF-AA4X-01 5 159835366 159835366 C T SLU7 Silent p.R263R 0.18 TCGA-ZF-AA4X-01 5 159849268 159849268 C G PTTG1 5'UTR 0.50 TCGA-ZF-AA4X-01 5 167674421 167674421 G A TENM2 Silent p.R2159R 0.45 TCGA-ZF-AA4X-01 5 175956764 175956764 C G RNF44 Missense_Mutation p.D328H 0.50 tolerated(0.05) benign(0.358) TCGA-ZF-AA4X-01 5 176939621 176939621 G A DDX41 Silent p.I475I 0.22 TCGA-ZF-AA4X-01 5 353869 353869 G C AHRR Missense_Mutation p.K33N 0.14 deleterious(0) probably_damaging(0.971) TCGA-ZF-AA4X-01 5 37000633 37000633 G A NIPBL Missense_Mutation p.D1155N 0.05 tolerated(0.26) benign(0.024) TCGA-ZF-AA4X-01 5 37020681 37020681 G C NIPBL Missense_Mutation p.E1711Q 0.14 tolerated(0.08) benign(0.093) TCGA-ZF-AA4X-01 5 38963047 38963047 C T RICTOR Silent p.Q499Q 0.16 TCGA-ZF-AA4X-01 5 40947750 40947750 T A C7 Missense_Mutation p.F262Y 0.33 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA4X-01 5 41018816 41018816 C G MROH2B Missense_Mutation p.E884Q 0.12 tolerated(0.52) benign(0.008) TCGA-ZF-AA4X-01 5 43446412 43446412 G C C5orf28 Missense_Mutation p.S187C 0.05 deleterious(0.05) possibly_damaging(0.819) TCGA-ZF-AA4X-01 5 60241095 60241095 C T NDUFAF2 Nonsense_Mutation p.Q5* 0.29 TCGA-ZF-AA4X-01 5 64096131 64096131 C T CWC27 Silent p.L242L 0.08 TCGA-ZF-AA4X-01 5 64914022 64914022 G C TRIM23 Missense_Mutation p.L48V 0.24 tolerated(0.35) benign(0.232) TCGA-ZF-AA4X-01 5 67584424 67584424 C G PIK3R1 Intron 0.28 TCGA-ZF-AA4X-01 5 68710000 68710000 C A RAD17 Missense_Mutation p.L643I 0.29 deleterious_low_confidence(0.03) benign(0.24) TCGA-ZF-AA4X-01 5 71757188 71757188 C T ZNF366 Missense_Mutation p.E46K 0.12 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-ZF-AA4X-01 5 74696043 74696043 C G COL4A3BP Missense_Mutation p.R494T 0.62 tolerated(0.06) benign(0.036) TCGA-ZF-AA4X-01 5 74869628 74869628 G C POLK Missense_Mutation p.K158N 0.25 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA4X-01 5 78596498 78596498 G T JMY Splice_Site p.X565_splice 0.17 TCGA-ZF-AA4X-01 5 82789633 82789633 C T VCAN Missense_Mutation p.R211W 0.08 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 5 82834409 82834409 G A VCAN Missense_Mutation p.E1863K 0.52 tolerated(1) benign(0) TCGA-ZF-AA4X-01 5 90261235 90261235 C T GPR98 Silent p.L5954L 0.18 TCGA-ZF-AA4X-01 5 94245022 94245022 C G MCTP1 Missense_Mutation p.R529T 0.23 tolerated(0.16) benign(0.01) TCGA-ZF-AA4X-01 5 96504514 96504514 C T RIOK2 Missense_Mutation p.M274I 0.21 tolerated(0.24) benign(0) TCGA-ZF-AA4X-01 6 111588154 111588154 G A KIAA1919 Missense_Mutation p.M463I 0.47 tolerated(0.12) benign(0.022) TCGA-ZF-AA4X-01 6 119344239 119344239 G C FAM184A Missense_Mutation p.Q341E 0.23 tolerated(0.24) benign(0.237) TCGA-ZF-AA4X-01 6 121491651 121491651 C G TBC1D32 Intron 0.21 TCGA-ZF-AA4X-01 6 123709679 123709679 C T TRDN Missense_Mutation p.E375K 0.44 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-ZF-AA4X-01 6 127796722 127796722 C T SOGA3 Missense_Mutation p.D817N 0.24 tolerated(0.26) benign(0.014) TCGA-ZF-AA4X-01 6 127797031 127797031 C T SOGA3 Missense_Mutation p.E714K 0.18 deleterious(0.01) possibly_damaging(0.902) TCGA-ZF-AA4X-01 6 128403764 128403764 C G PTPRK Missense_Mutation p.R532T 0.12 tolerated(0.2) benign(0.215) TCGA-ZF-AA4X-01 6 13592024 13592024 G A SIRT5 Missense_Mutation p.E125K 0.19 deleterious(0.01) probably_damaging(0.951) TCGA-ZF-AA4X-01 6 13604798 13604798 G C SIRT5 Intron 0.14 TCGA-ZF-AA4X-01 6 136888983 136888983 C T MAP3K5 Missense_Mutation p.E1183K 0.42 deleterious(0.04) probably_damaging(0.989) TCGA-ZF-AA4X-01 6 136990476 136990476 G A MAP3K5 Silent p.V437V 0.24 TCGA-ZF-AA4X-01 6 142736200 142736200 C T GPR126 Missense_Mutation p.S879L 0.23 tolerated(0.28) possibly_damaging(0.767) TCGA-ZF-AA4X-01 6 151116998 151116998 G T PLEKHG1 Nonsense_Mutation p.E197* 0.09 TCGA-ZF-AA4X-01 6 152551803 152551803 G A SYNE1 Missense_Mutation p.S7025L 0.14 benign(0.158) TCGA-ZF-AA4X-01 6 158923290 158923290 G C TULP4 Missense_Mutation p.L865F 0.21 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-ZF-AA4X-01 6 159210367 159210367 C G EZR Missense_Mutation p.E17Q 0.45 deleterious(0) probably_damaging(0.979) TCGA-ZF-AA4X-01 6 168265330 168265330 C G MLLT4 Missense_Mutation p.Q69E 0.51 tolerated(0.09) probably_damaging(0.992) TCGA-ZF-AA4X-01 6 18212790 18212790 G C KDM1B Missense_Mutation p.K414N 0.25 tolerated(0.31) unknown(0) TCGA-ZF-AA4X-01 6 18222258 18222258 G A KDM1B 3'UTR 0.36 TCGA-ZF-AA4X-01 6 20102467 20102467 C A MBOAT1 3'UTR 0.35 TCGA-ZF-AA4X-01 6 26032111 26032111 C T HIST1H3B Missense_Mutation p.E60K 0.39 deleterious_low_confidence(0.02) benign(0.113) TCGA-ZF-AA4X-01 6 26056141 26056141 C G HIST1H1C Missense_Mutation p.K172N 0.16 deleterious(0.01) unknown(0) TCGA-ZF-AA4X-01 6 26252083 26252083 G A HIST1H2BH Missense_Mutation p.D69N 0.10 deleterious_low_confidence(0.05) benign(0.209) TCGA-ZF-AA4X-01 6 26273344 26273344 G A HIST1H2BI Silent p.K47K 0.41 TCGA-ZF-AA4X-01 6 27100915 27100915 C T HIST1H2AG Missense_Mutation p.A22V 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-AA4X-01 6 27833256 27833256 G A HIST1H2AL Missense_Mutation p.E42K 0.21 tolerated_low_confidence(0.1) benign(0.247) TCGA-ZF-AA4X-01 6 29394788 29394788 G A OR11A1 Missense_Mutation p.P211S 0.07 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA4X-01 6 29394816 29394816 G A OR11A1 Silent p.L201L 0.10 TCGA-ZF-AA4X-01 6 29408407 29408407 C A OR10C1 Silent p.L205L 0.09 TCGA-ZF-AA4X-01 6 30632641 30632641 G C DHX16 Silent p.L418L 0.07 TCGA-ZF-AA4X-01 6 30954817 30954817 G A MUC21 Missense_Mutation p.E289K 0.20 tolerated(0.6) unknown(0) TCGA-ZF-AA4X-01 6 3137618 3137618 G A BPHL Nonsense_Mutation p.W185* 0.38 TCGA-ZF-AA4X-01 6 31543695 31543695 G C TNF Missense_Mutation p.Q59H 0.07 tolerated(0.06) benign(0.022) TCGA-ZF-AA4X-01 6 31778327 31778327 G C HSPA1L Missense_Mutation p.Q475E 0.10 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-ZF-AA4X-01 6 31931709 31931709 C T SKIV2L Missense_Mutation p.S556F 0.43 deleterious(0.02) possibly_damaging(0.705) TCGA-ZF-AA4X-01 6 31934858 31934858 C T SKIV2L Silent p.V806V 0.36 TCGA-ZF-AA4X-01 6 31936655 31936655 G T SKIV2L Missense_Mutation p.R1063L 0.37 deleterious(0.01) possibly_damaging(0.451) TCGA-ZF-AA4X-01 6 31937794 31937794 G A DXO Missense_Mutation p.H351Y 0.48 tolerated(1) benign(0.002) TCGA-ZF-AA4X-01 6 31940236 31940236 G C STK19 Missense_Mutation p.K126N 0.35 deleterious(0) probably_damaging(0.953) TCGA-ZF-AA4X-01 6 31940508 31940508 G C STK19 Missense_Mutation p.D181H 0.33 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4X-01 6 32138631 32138631 G C AGPAT1 Intron 0.30 TCGA-ZF-AA4X-01 6 32138667 32138667 G A AGPAT1 Intron 0.28 TCGA-ZF-AA4X-01 6 33287334 33287334 G A DAXX Missense_Mutation p.S588F 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-ZF-AA4X-01 6 33653566 33653566 C T ITPR3 Silent p.L1877L 0.39 TCGA-ZF-AA4X-01 6 34839389 34839389 C G UHRF1BP1 Missense_Mutation p.S1337C 0.08 deleterious(0) possibly_damaging(0.886) TCGA-ZF-AA4X-01 6 35923012 35923012 G C SLC26A8 Missense_Mutation p.L717V 0.41 tolerated(0.12) benign(0.119) TCGA-ZF-AA4X-01 6 39159364 39159364 C T KCNK5 Missense_Mutation p.E268K 0.15 tolerated(0.07) benign(0.283) TCGA-ZF-AA4X-01 6 40400285 40400285 C T LRFN2 Missense_Mutation p.E190K 0.06 tolerated(0.11) possibly_damaging(0.771) TCGA-ZF-AA4X-01 6 41119114 41119114 C T TREML1 Missense_Mutation p.E129K 0.15 tolerated(0.34) benign(0.021) TCGA-ZF-AA4X-01 6 43034073 43034073 C G KLC4 Missense_Mutation p.Q219E 0.07 tolerated(0.06) benign(0.025) TCGA-ZF-AA4X-01 6 44218130 44218130 G A HSP90AB1 Missense_Mutation p.E251K 0.15 tolerated(0.09) benign(0.016) TCGA-ZF-AA4X-01 6 52268495 52268495 C G PAQR8 Missense_Mutation p.H162D 0.21 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA4X-01 6 52268871 52268876 CATTTC AATTT PAQR8 Frame_Shift_Del p.A287Efs*55 0.15 TCGA-ZF-AA4X-01 6 52658985 52658985 C G GSTA1 Missense_Mutation p.D118H 0.16 deleterious(0) possibly_damaging(0.725) TCGA-ZF-AA4X-01 6 70981388 70981388 G A COL9A1 Silent p.L371L 0.27 TCGA-ZF-AA4X-01 6 74171787 74171787 C T MTO1 Silent p.D70D 0.31 TCGA-ZF-AA4X-01 6 76744047 76744047 C G IMPG1 Missense_Mutation p.R161T 0.28 deleterious(0.03) benign(0.063) TCGA-ZF-AA4X-01 6 7861683 7861683 G C BMP6 Splice_Site p.X286_splice 0.16 TCGA-ZF-AA4X-01 6 88265146 88265146 C A RARS2 Missense_Mutation p.K125N 0.44 tolerated(0.06) benign(0.155) TCGA-ZF-AA4X-01 6 90459266 90459266 C T MDN1 Missense_Mutation p.R1204K 0.14 probably_damaging(1) TCGA-ZF-AA4X-01 6 90459272 90459272 C A MDN1 Missense_Mutation p.G1202V 0.16 probably_damaging(1) TCGA-ZF-AA4X-01 6 99781282 99781282 G A FAXC Missense_Mutation p.H182Y 0.21 tolerated(0.08) benign(0.225) TCGA-ZF-AA4X-01 7 100484426 100484426 C T SRRT Missense_Mutation p.S553L 0.24 deleterious(0) benign(0.131) TCGA-ZF-AA4X-01 7 100552605 100552605 C G MUC3A Silent p.L452L 0.09 TCGA-ZF-AA4X-01 7 100676916 100676916 C G MUC17 Nonsense_Mutation p.S740* 0.08 TCGA-ZF-AA4X-01 7 101957815 101957816 - TGTCAAAAAAAAAAAAGAAGA SH2B2 In_Frame_Ins p.T486_R487insLSKKKKK 0.14 TCGA-ZF-AA4X-01 7 102016712 102016712 G C PRKRIP1 5'UTR 0.15 TCGA-ZF-AA4X-01 7 103322579 103322579 C G RELN Missense_Mutation p.E425Q 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-ZF-AA4X-01 7 107703339 107703339 C T LAMB4 Silent p.P1054P 0.27 TCGA-ZF-AA4X-01 7 121960345 121960345 C T CADPS2 Silent p.L1255L 0.16 TCGA-ZF-AA4X-01 7 127222778 127222778 C T GCC1 Missense_Mutation p.E540K 0.14 deleterious(0.01) probably_damaging(0.955) TCGA-ZF-AA4X-01 7 128845101 128845101 C T SMO Missense_Mutation p.R199W 0.10 deleterious(0.01) benign(0.069) TCGA-ZF-AA4X-01 7 133948745 133948745 G C LRGUK 3'UTR 0.10 TCGA-ZF-AA4X-01 7 149508064 149508064 C T SSPO RNA 0.16 TCGA-ZF-AA4X-01 7 150174541 150174541 G A GIMAP8 Silent p.T557T 0.14 TCGA-ZF-AA4X-01 7 150730929 150730929 G A ABCB8 Silent p.V111V 0.17 TCGA-ZF-AA4X-01 7 152139736 152139736 G A AC005631.1 3'Flank 0.08 TCGA-ZF-AA4X-01 7 21788243 21788243 C G DNAH11 Silent p.L2859L 0.23 TCGA-ZF-AA4X-01 7 2472763 2472763 C T CHST12 Silent p.H163H 0.34 TCGA-ZF-AA4X-01 7 26251786 26251786 G C CBX3 Missense_Mutation p.E170D 0.07 deleterious(0.04) benign(0.11) TCGA-ZF-AA4X-01 7 43635649 43635649 C G STK17A Missense_Mutation p.P119R 0.09 deleterious(0.02) probably_damaging(0.926) TCGA-ZF-AA4X-01 7 50459497 50459497 C T IKZF1 Silent p.L220L 0.11 TCGA-ZF-AA4X-01 7 5347938 5347938 C T TNRC18 Silent p.A2902A 0.21 TCGA-ZF-AA4X-01 7 5413702 5413702 G T TNRC18 Missense_Mutation p.F1071L 0.16 possibly_damaging(0.907) TCGA-ZF-AA4X-01 7 54636732 54636732 C A VSTM2A Missense_Mutation p.S222Y 0.16 deleterious_low_confidence(0.02) benign(0.191) TCGA-ZF-AA4X-01 7 64167069 64167069 G A ZNF107 Silent p.V129V 0.15 TCGA-ZF-AA4X-01 7 66236889 66236889 G A RABGEF1 Translation_Start_Site p.M1? 0.17 tolerated(0.06) benign(0.029) TCGA-ZF-AA4X-01 7 66760713 66760713 G T Y_RNA 3'Flank 0.17 TCGA-ZF-AA4X-01 7 70228014 70228014 C T AUTS2 Nonsense_Mutation p.Q301* 0.18 TCGA-ZF-AA4X-01 7 70228182 70228182 C A AUTS2 Missense_Mutation p.Q357K 0.14 tolerated(1) benign(0.122) TCGA-ZF-AA4X-01 7 73449741 73449741 C T ELN Missense_Mutation p.P44S 0.12 unknown(0) TCGA-ZF-AA4X-01 7 74193748 74193748 C G NCF1 Silent p.L125L 0.31 TCGA-ZF-AA4X-01 7 77326100 77326100 C G RSBN1L Missense_Mutation p.S105C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-ZF-AA4X-01 7 87160624 87160624 C T ABCB1 Missense_Mutation p.E891K 0.14 tolerated(0.12) probably_damaging(0.924) TCGA-ZF-AA4X-01 7 87837742 87837742 C T SRI Intron 0.38 TCGA-ZF-AA4X-01 7 90042499 90042499 C T CLDN12 Missense_Mutation p.S170L 0.11 tolerated(0.12) benign(0.033) TCGA-ZF-AA4X-01 7 91981897 91981897 C G ANKIB1 Silent p.L446L 0.17 TCGA-ZF-AA4X-01 7 93113292 93113292 C A CALCR Intron 0.21 TCGA-ZF-AA4X-01 7 98508873 98508873 C G TRRAP Missense_Mutation p.I662M 0.14 probably_damaging(0.953) TCGA-ZF-AA4X-01 7 98592261 98592261 G C TRRAP Missense_Mutation p.E3353Q 0.37 probably_damaging(0.968) TCGA-ZF-AA4X-01 7 98609757 98609757 G C TRRAP Missense_Mutation p.E3787Q 0.26 possibly_damaging(0.84) TCGA-ZF-AA4X-01 7 99473757 99473757 C G OR2AE1 Silent p.L300L 0.23 TCGA-ZF-AA4X-01 7 99695524 99695524 C A MCM7 Missense_Mutation p.M306I 0.16 tolerated(0.35) benign(0.001) TCGA-ZF-AA4X-01 8 103297768 103297768 C G UBR5 Missense_Mutation p.L1819F 0.04 deleterious(0.02) probably_damaging(0.986) TCGA-ZF-AA4X-01 8 110588093 110588093 C G SYBU Missense_Mutation p.R345P 0.40 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA4X-01 8 113331105 113331105 C T CSMD3 Missense_Mutation p.E2441K 0.24 tolerated(0.14) possibly_damaging(0.542) TCGA-ZF-AA4X-01 8 11702599 11702599 C T CTSB 3'UTR 0.12 TCGA-ZF-AA4X-01 8 117954975 117954975 C T AARD 3'UTR 0.14 TCGA-ZF-AA4X-01 8 120744126 120744126 C G TAF2 3'UTR 0.06 TCGA-ZF-AA4X-01 8 121216077 121216077 C G COL14A1 Missense_Mutation p.S336C 0.50 deleterious(0.03) benign(0.443) TCGA-ZF-AA4X-01 8 124267736 124267736 G A ZHX1 Silent p.L151L 0.23 TCGA-ZF-AA4X-01 8 124369977 124369977 C T ATAD2 Splice_Site p.X461_splice 0.38 TCGA-ZF-AA4X-01 8 131136308 131136308 C T ASAP1 Missense_Mutation p.E520K 0.43 deleterious(0) probably_damaging(0.984) TCGA-ZF-AA4X-01 8 136561011 136561011 G A KHDRBS3 Silent p.R113R 0.32 TCGA-ZF-AA4X-01 8 144990767 144990767 G T PLEC Missense_Mutation p.L4545M 0.05 probably_damaging(0.998) TCGA-ZF-AA4X-01 8 144991215 144991215 G A PLEC Silent p.I4395I 0.06 TCGA-ZF-AA4X-01 8 145559802 145559802 G C SCRT1 Silent p.V10V 0.31 TCGA-ZF-AA4X-01 8 145736753 145736753 C T RECQL4 3'UTR 0.49 TCGA-ZF-AA4X-01 8 146279446 146279446 G C C8orf33 Missense_Mutation p.R198T 0.17 deleterious(0) possibly_damaging(0.897) TCGA-ZF-AA4X-01 8 17731905 17731905 G A FGL1 Nonsense_Mutation p.Q124* 0.58 TCGA-ZF-AA4X-01 8 18513169 18513169 C G PSD3 Missense_Mutation p.E733D 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-AA4X-01 8 23003197 23003197 G A TNFRSF10D Silent p.L240L 0.26 TCGA-ZF-AA4X-01 8 30701384 30701384 C T TEX15 Missense_Mutation p.R1717Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 8 30706445 30706445 G A TEX15 Missense_Mutation p.S30F 0.12 deleterious(0.01) benign(0.179) TCGA-ZF-AA4X-01 8 30889906 30889906 C G PURG Silent p.L131L 0.43 TCGA-ZF-AA4X-01 8 39468298 39468298 G T ADAM18 Intron 0.33 TCGA-ZF-AA4X-01 8 41166178 41166178 G C SFRP1 Missense_Mutation p.I167M 0.23 deleterious(0) possibly_damaging(0.799) TCGA-ZF-AA4X-01 8 42038083 42038083 C T PLAT Missense_Mutation p.G337E 0.12 tolerated(0.17) benign(0.066) TCGA-ZF-AA4X-01 8 48734210 48734210 C G PRKDC Missense_Mutation p.E3021D 0.53 benign(0.149) TCGA-ZF-AA4X-01 8 48734253 48734253 C T PRKDC Nonsense_Mutation p.W3007* 0.57 TCGA-ZF-AA4X-01 8 48734323 48734323 C T PRKDC Missense_Mutation p.E2984K 0.75 probably_damaging(0.925) TCGA-ZF-AA4X-01 8 54727252 54727252 G A ATP6V1H Silent p.F165F 0.21 TCGA-ZF-AA4X-01 8 56668838 56668838 C T TMEM68 Missense_Mutation p.R153Q 0.15 tolerated(0.23) benign(0.2) TCGA-ZF-AA4X-01 8 68130102 68130102 G A ARFGEF1 Silent p.L1510L 0.17 TCGA-ZF-AA4X-01 8 70744092 70744092 G C SLCO5A1 Missense_Mutation p.L273V 0.25 deleterious(0) possibly_damaging(0.756) TCGA-ZF-AA4X-01 8 75924732 75924732 G A CRISPLD1 Missense_Mutation p.G108E 0.05 deleterious(0) benign(0.104) TCGA-ZF-AA4X-01 8 82391026 82391026 C G FABP4 3'UTR 0.26 TCGA-ZF-AA4X-01 8 95690516 95690516 G A ESRP1 Silent p.L579L 0.16 TCGA-ZF-AA4X-01 8 95897786 95897786 C A CCNE2 Nonsense_Mutation p.E201* 0.43 TCGA-ZF-AA4X-01 9 101765795 101765795 G A COL15A1 Missense_Mutation p.E376K 0.13 tolerated_low_confidence(0.09) benign(0.089) TCGA-ZF-AA4X-01 9 119109392 119109392 C T PAPPA Missense_Mutation p.H1290Y 0.11 tolerated(0.08) benign(0.415) TCGA-ZF-AA4X-01 9 124072985 124072985 C G GSN Missense_Mutation p.F176L 0.17 tolerated(0.28) possibly_damaging(0.481) TCGA-ZF-AA4X-01 9 124521256 124521256 G A DAB2IP Missense_Mutation p.R171Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 9 125835837 125835837 G A RABGAP1 Missense_Mutation p.E664K 0.04 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA4X-01 9 127644138 127644138 C T GOLGA1 Silent p.L687L 0.28 TCGA-ZF-AA4X-01 9 130549865 130549865 G C CDK9 Missense_Mutation p.L81F 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA4X-01 9 130942749 130942749 C G CIZ1 Missense_Mutation p.A246P 0.09 deleterious(0.01) benign(0.333) TCGA-ZF-AA4X-01 9 131020360 131020360 G A GOLGA2 Nonsense_Mutation p.Q776* 0.50 TCGA-ZF-AA4X-01 9 131222828 131222828 G C ODF2 Intron 0.05 TCGA-ZF-AA4X-01 9 131757695 131757695 C T NUP188 Missense_Mutation p.H1085Y 0.20 tolerated(0.08) benign(0.004) TCGA-ZF-AA4X-01 9 133499074 133499074 C T FUBP3 Silent p.I317I 0.33 TCGA-ZF-AA4X-01 9 134034785 134034785 C T NUP214 Missense_Mutation p.H818Y 0.14 benign(0.437) TCGA-ZF-AA4X-01 9 135202115 135202115 G C SETX Missense_Mutation p.L1624V 0.06 tolerated(0.76) benign(0.048) TCGA-ZF-AA4X-01 9 135698611 135698611 C G AK8 Missense_Mutation p.Q290H 0.05 deleterious(0.04) probably_damaging(1) TCGA-ZF-AA4X-01 9 135975664 135975664 C T RALGDS Missense_Mutation p.D854N 0.24 tolerated(0.05) unknown(0) TCGA-ZF-AA4X-01 9 138742269 138742269 G C CAMSAP1 Missense_Mutation p.L283V 0.20 tolerated(0.2) benign(0.26) TCGA-ZF-AA4X-01 9 139272859 139272859 C A SNAPC4 Missense_Mutation p.M1140I 0.19 tolerated(0.23) benign(0) TCGA-ZF-AA4X-01 9 139641937 139641937 C T LCN6 Missense_Mutation p.V57M 0.43 deleterious(0.01) benign(0.339) TCGA-ZF-AA4X-01 9 14801792 14801792 C T FREM1 Silent p.L1184L 0.07 TCGA-ZF-AA4X-01 9 15591402 15591402 G A CCDC171 Missense_Mutation p.E131K 0.05 deleterious(0) possibly_damaging(0.693) TCGA-ZF-AA4X-01 9 17786485 17786485 C G SH3GL2 Silent p.L98L 0.59 TCGA-ZF-AA4X-01 9 27009124 27009124 G C IFT74 Missense_Mutation p.E232Q 0.17 tolerated(0.23) benign(0.022) TCGA-ZF-AA4X-01 9 27217715 27217715 C T TEK Silent p.I1007I 0.07 TCGA-ZF-AA4X-01 9 328063 328063 C G DOCK8 Missense_Mutation p.F312L 0.21 tolerated(1) benign(0.001) TCGA-ZF-AA4X-01 9 34310758 34310758 G A KIF24 Missense_Mutation p.S196L 0.19 deleterious(0.03) benign(0.111) TCGA-ZF-AA4X-01 9 35094350 35094350 C T PIGO Missense_Mutation p.R173H 0.19 deleterious(0.02) benign(0.014) TCGA-ZF-AA4X-01 9 6329038 6329038 G T TPD52L3 3'UTR 0.30 TCGA-ZF-AA4X-01 9 75420351 75420351 C T TMC1 Silent p.L540L 0.07 TCGA-ZF-AA4X-01 9 77400865 77400865 G T TRPM6 Missense_Mutation p.F948L 0.08 deleterious(0.03) possibly_damaging(0.803) TCGA-ZF-AA4X-01 9 80881599 80881599 C T CEP78 Missense_Mutation p.S697L 0.15 deleterious_low_confidence(0.05) benign(0.004) TCGA-ZF-AA4X-01 9 80881641 80881641 C T CEP78 Missense_Mutation p.S711F 0.13 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-ZF-AA4X-01 9 80921229 80921229 G C PSAT1 Splice_Site p.X133_splice 0.19 TCGA-ZF-AA4X-01 9 84606023 84606023 C T SPATA31D1 Missense_Mutation p.S213L 0.04 tolerated(0.19) benign(0.137) TCGA-ZF-AA4X-01 9 86495311 86495311 C T KIF27 Missense_Mutation p.M848I 0.04 deleterious(0.02) benign(0.291) TCGA-ZF-AA4X-01 9 94495507 94495507 G A ROR2 Silent p.L278L 0.43 TCGA-ZF-AA4X-01 9 95778075 95778075 C T FGD3 Silent p.F413F 0.23 TCGA-ZF-AA4X-01 9 97325731 97325731 G A FBP2 Missense_Mutation p.P240S 0.07 deleterious(0.01) benign(0.246) TCGA-ZF-AA4X-01 X 100276965 100276965 G A TRMT2B Silent p.F281F 0.81 TCGA-ZF-AA4X-01 X 106109143 106109143 C T TBC1D8B Missense_Mutation p.H848Y 0.16 tolerated(0.56) benign(0.078) TCGA-ZF-AA4X-01 X 117817073 117817073 G A DOCK11 Missense_Mutation p.E1999K 0.12 tolerated(0.37) benign(0.42) TCGA-ZF-AA4X-01 X 118971836 118971836 C G UPF3B Missense_Mutation p.E396Q 0.47 tolerated(0.11) probably_damaging(0.954) TCGA-ZF-AA4X-01 X 118971859 118971859 C G UPF3B Missense_Mutation p.R388T 0.42 deleterious(0.01) probably_damaging(0.916) TCGA-ZF-AA4X-01 X 119005699 119005699 G A RNF113A 5'UTR 0.30 TCGA-ZF-AA4X-01 X 119005804 119005804 G C NDUFA1 5'UTR 0.33 TCGA-ZF-AA4X-01 X 119005814 119005814 G A NDUFA1 5'UTR 0.34 TCGA-ZF-AA4X-01 X 123171442 123171442 C T STAG2 Silent p.I118I 0.08 TCGA-ZF-AA4X-01 X 123538944 123538944 G A TENM1 Silent p.I1776I 0.41 TCGA-ZF-AA4X-01 X 134425452 134425452 C G ZNF75D Missense_Mutation p.Q214H 0.38 tolerated(0.06) benign(0.001) TCGA-ZF-AA4X-01 X 142717330 142717330 G A SLITRK4 Missense_Mutation p.P532L 0.81 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA4X-01 X 21863386 21863386 G A MBTPS2 Missense_Mutation p.D108N 0.11 tolerated(0.14) benign(0.004) TCGA-ZF-AA4X-01 X 23929921 23929921 C G CXorf58 Missense_Mutation p.S55C 0.16 tolerated(0.17) benign(0.022) TCGA-ZF-AA4X-01 X 35821053 35821053 G A MAGEB16 Missense_Mutation p.R247K 0.37 tolerated(0.32) benign(0.021) TCGA-ZF-AA4X-01 X 39913224 39913224 C T BCOR Missense_Mutation p.D1631N 0.21 deleterious(0.01) benign(0.043) TCGA-ZF-AA4X-01 X 48673272 48673272 G A HDAC6 Missense_Mutation p.G344E 0.33 deleterious(0) probably_damaging(1) TCGA-ZF-AA4X-01 X 54259392 54259392 C T WNK3 Missense_Mutation p.E1564K 0.38 tolerated(0.34) benign(0.044) TCGA-ZF-AA4X-01 X 67731688 67731688 C G YIPF6 Intron 0.42 TCGA-ZF-AA4X-01 X 70467264 70467264 G A ZMYM3 Silent p.L749L 0.70 TCGA-ZF-AA4X-01 X 96171543 96171543 C T DIAPH2 Missense_Mutation p.S280F 0.18 deleterious(0) unknown(0) TCGA-ZF-AA51-01 10 100190958 100190958 C T HPS1 Missense_Mutation p.E200K 0.21 deleterious(0.03) benign(0.013) TCGA-ZF-AA51-01 10 103343127 103343127 G C POLL Intron 0.40 TCGA-ZF-AA51-01 10 103899030 103899030 C T PPRC1 Silent p.F255F 0.28 TCGA-ZF-AA51-01 10 105164886 105164886 G A PDCD11 Silent p.L170L 0.34 TCGA-ZF-AA51-01 10 1070541 1070541 C G IDI2 Silent p.L41L 0.18 TCGA-ZF-AA51-01 10 1070588 1070588 C T IDI2 Missense_Mutation p.E26K 0.19 tolerated(0.08) benign(0.004) TCGA-ZF-AA51-01 10 115405671 115405671 C T NRAP Missense_Mutation p.M341I 0.35 tolerated(0.07) probably_damaging(0.992) TCGA-ZF-AA51-01 10 116735279 116735279 C T TRUB1 3'UTR 0.33 TCGA-ZF-AA51-01 10 121338340 121338340 C A TIAL1 Nonsense_Mutation p.E169* 0.35 TCGA-ZF-AA51-01 10 12148393 12148393 G C DHTKD1 Missense_Mutation p.G682A 0.57 tolerated(0.05) benign(0.034) TCGA-ZF-AA51-01 10 124392387 124392387 C T DMBT1 Silent p.L1997L 0.38 TCGA-ZF-AA51-01 10 124919978 124919978 G C BUB3 Missense_Mutation p.R158T 0.21 tolerated(0.45) benign(0.011) TCGA-ZF-AA51-01 10 127429670 127429670 G C EDRF1 Missense_Mutation p.Q757H 0.29 deleterious(0.05) probably_damaging(0.986) TCGA-ZF-AA51-01 10 13320291 13320291 G C PHYH 3'UTR 0.16 TCGA-ZF-AA51-01 10 15183526 15183526 C G NMT2 Missense_Mutation p.K47N 0.22 tolerated_low_confidence(0.06) benign(0.196) TCGA-ZF-AA51-01 10 15617559 15617559 G C ITGA8 Missense_Mutation p.H803D 0.48 tolerated(0.06) benign(0.219) TCGA-ZF-AA51-01 10 17089552 17089552 A C CUBN Missense_Mutation p.F1064V 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-ZF-AA51-01 10 23287284 23287284 C G ARMC3 Silent p.L461L 0.26 TCGA-ZF-AA51-01 10 25887151 25887151 G A GPR158 Missense_Mutation p.E866K 0.13 tolerated(0.19) benign(0.158) TCGA-ZF-AA51-01 10 27294537 27294537 C G ANKRD26 Missense_Mutation p.K1705N 0.12 tolerated(0.09) benign(0.019) TCGA-ZF-AA51-01 10 28229527 28229527 G C ARMC4 Missense_Mutation p.P651A 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-ZF-AA51-01 10 31799699 31799699 G A ZEB1 Missense_Mutation p.E195K 0.16 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA51-01 10 50723838 50723838 C T ERCC6-PGBD3 Silent p.L909L 0.21 TCGA-ZF-AA51-01 10 53458721 53458721 C T CSTF2T Missense_Mutation p.V197I 0.10 tolerated(0.25) possibly_damaging(0.785) TCGA-ZF-AA51-01 10 5790587 5790587 G C FAM208B Missense_Mutation p.D1735H 0.53 deleterious(0.01) possibly_damaging(0.607) TCGA-ZF-AA51-01 10 62670660 62670660 C T RHOBTB1 Missense_Mutation p.R94H 0.21 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 10 63212699 63212699 G A TMEM26 Silent p.F47F 0.15 TCGA-ZF-AA51-01 10 69750954 69750954 T G HERC4 Missense_Mutation p.E425A 0.26 tolerated(0.41) benign(0.017) TCGA-ZF-AA51-01 10 72541683 72541683 G A TBATA Missense_Mutation p.R51W 0.28 tolerated(0.06) possibly_damaging(0.54) TCGA-ZF-AA51-01 10 76735876 76735876 G C KAT6B Missense_Mutation p.R594T 0.25 benign(0.438) TCGA-ZF-AA51-01 10 8092836 8092836 C T GATA3 5'Flank 0.60 TCGA-ZF-AA51-01 10 81192416 81192416 C T ZCCHC24 Silent p.L115L 0.35 TCGA-ZF-AA51-01 10 82403890 82403890 C T SH2D4B 3'UTR 0.38 TCGA-ZF-AA51-01 10 96098452 96098452 C G NOC3L Missense_Mutation p.Q668H 0.26 tolerated(0.07) benign(0.03) TCGA-ZF-AA51-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.18 TCGA-ZF-AA51-01 11 102595595 102595595 C G MMP8 5'UTR 0.15 TCGA-ZF-AA51-01 11 102595685 102595685 C T MMP8 5'UTR 0.29 TCGA-ZF-AA51-01 11 103306707 103306707 G C DYNC2H1 Missense_Mutation p.E4142Q 0.46 benign(0.406) TCGA-ZF-AA51-01 11 110007318 110007318 C T ZC3H12C Intron 0.32 TCGA-ZF-AA51-01 11 111608256 111608256 C T PPP2R1B Silent p.V609V 0.26 TCGA-ZF-AA51-01 11 111637028 111637028 C G PPP2R1B Missense_Mutation p.D20H 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-ZF-AA51-01 11 111922053 111922053 G A DLAT Nonsense_Mutation p.W498* 0.18 TCGA-ZF-AA51-01 11 114310358 114310358 G A REXO2 Silent p.G36G 0.15 TCGA-ZF-AA51-01 11 118279881 118279881 G C ATP5L 3'UTR 0.53 TCGA-ZF-AA51-01 11 118890872 118890872 C G TRAPPC4 Missense_Mutation p.I121M 0.16 tolerated(0.16) probably_damaging(0.97) TCGA-ZF-AA51-01 11 11957937 11957937 G A USP47 Missense_Mutation p.E585K 0.21 deleterious(0.01) probably_damaging(0.94) TCGA-ZF-AA51-01 11 125778370 125778370 G C DDX25 Missense_Mutation p.R160T 0.15 deleterious(0) possibly_damaging(0.811) TCGA-ZF-AA51-01 11 1271640 1271640 G T MUC5B Silent p.L4510L 0.19 TCGA-ZF-AA51-01 11 129991605 129991605 C G APLP2 Missense_Mutation p.Q205E 0.15 tolerated(0.55) benign(0.012) TCGA-ZF-AA51-01 11 1579102 1579102 G C DUSP8 Missense_Mutation p.A248G 0.28 deleterious(0.01) benign(0.429) TCGA-ZF-AA51-01 11 22249057 22249057 C A ANO5 Missense_Mutation p.F191L 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-ZF-AA51-01 11 31531327 31531327 C A ELP4 5'UTR 0.25 TCGA-ZF-AA51-01 11 44069600 44069600 C G ACCSL Nonsense_Mutation p.S5* 0.19 TCGA-ZF-AA51-01 11 44639760 44639760 G A CD82 Missense_Mutation p.E163K 0.21 tolerated(0.87) benign(0.1) TCGA-ZF-AA51-01 11 4510814 4510814 C A OR52K1 Silent p.L228L 0.19 TCGA-ZF-AA51-01 11 4661542 4661542 C T OR51D1 Silent p.F174F 0.26 TCGA-ZF-AA51-01 11 47202146 47202146 G A PACSIN3 Nonsense_Mutation p.Q103* 0.39 TCGA-ZF-AA51-01 11 47236587 47236587 C G DDB2 5'UTR 0.18 TCGA-ZF-AA51-01 11 47825079 47825079 G C NUP160 Missense_Mutation p.Q896E 0.18 deleterious(0.01) benign(0.007) TCGA-ZF-AA51-01 11 48510813 48510813 C T OR4A47 Nonsense_Mutation p.Q157* 0.21 TCGA-ZF-AA51-01 11 51515674 51515674 G C OR4C46 Missense_Mutation p.M131I 0.39 tolerated_low_confidence(0.19) benign(0.001) TCGA-ZF-AA51-01 11 5461964 5461964 A C OR51I1 Missense_Mutation p.S261A 0.16 tolerated(0.12) probably_damaging(0.996) TCGA-ZF-AA51-01 11 55339744 55339744 C G OR4C16 Silent p.V47V 0.29 TCGA-ZF-AA51-01 11 55563880 55563880 C T OR5D14 Silent p.V283V 0.17 TCGA-ZF-AA51-01 11 55735632 55735632 C G OR10AG1 Missense_Mutation p.C103S 0.43 tolerated(0.08) benign(0.178) TCGA-ZF-AA51-01 11 56230147 56230147 G A OR5M9 Missense_Mutation p.T244M 0.45 tolerated(0.17) possibly_damaging(0.9) TCGA-ZF-AA51-01 11 56510367 56510367 C T OR9G4 Silent p.L307L 0.13 TCGA-ZF-AA51-01 11 57426946 57426946 G A CLP1 5'UTR 0.10 TCGA-ZF-AA51-01 11 57426958 57426958 G A CLP1 Missense_Mutation p.E4K 0.10 tolerated(0.21) benign(0.001) TCGA-ZF-AA51-01 11 57427062 57427062 G C CLP1 Missense_Mutation p.L38F 0.16 tolerated(0.26) benign(0.181) TCGA-ZF-AA51-01 11 58391530 58391530 G C CNTF Missense_Mutation p.K46N 0.13 tolerated(0.35) benign(0.002) TCGA-ZF-AA51-01 11 59271959 59271959 G C OR4D11 Missense_Mutation p.R304T 0.32 deleterious(0.01) benign(0.073) TCGA-ZF-AA51-01 11 60165322 60165322 C T MS4A14 Intron 0.34 TCGA-ZF-AA51-01 11 6023938 6023938 G C OR56A4 Missense_Mutation p.I147M 0.19 deleterious(0) probably_damaging(0.979) TCGA-ZF-AA51-01 11 61563671 61563671 C T FEN1 Missense_Mutation p.H280Y 0.17 deleterious(0) benign(0) TCGA-ZF-AA51-01 11 61896248 61896248 C T INCENP Silent p.F49F 0.17 TCGA-ZF-AA51-01 11 62290314 62290314 G T AHNAK Missense_Mutation p.P3859T 0.19 probably_damaging(1) TCGA-ZF-AA51-01 11 64055319 64055319 G A GPR137 Silent p.V236V 0.25 TCGA-ZF-AA51-01 11 64084438 64084438 C T TRMT112 Silent p.V91V 0.23 TCGA-ZF-AA51-01 11 64557919 64557919 G A MAP4K2 Missense_Mutation p.S703L 0.16 tolerated(0.25) benign(0.009) TCGA-ZF-AA51-01 11 6461461 6461461 C T HPX Nonsense_Mutation p.W90* 0.27 TCGA-ZF-AA51-01 11 64822077 64822077 C T NAALADL1 Missense_Mutation p.R246Q 0.38 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA51-01 11 65064753 65064753 C T POLA2 3'UTR 0.21 TCGA-ZF-AA51-01 11 6592004 6592004 C T DNHD1 Missense_Mutation p.S4421L 0.29 benign(0.034) TCGA-ZF-AA51-01 11 6648747 6648747 C T DCHS1 Silent p.L1841L 0.30 TCGA-ZF-AA51-01 11 67022358 67022358 G C KDM2A Missense_Mutation p.L1107F 0.15 deleterious(0) probably_damaging(0.973) TCGA-ZF-AA51-01 11 67207599 67207599 C G CORO1B Missense_Mutation p.E333Q 0.19 deleterious(0) possibly_damaging(0.894) TCGA-ZF-AA51-01 11 71729512 71729512 G A NUMA1 Silent p.L264L 0.18 TCGA-ZF-AA51-01 11 76371368 76371368 G A LRRC32 Silent p.S423S 0.33 TCGA-ZF-AA51-01 11 76507390 76507390 G A TSKU Missense_Mutation p.E244K 0.27 tolerated(0.56) benign(0.001) TCGA-ZF-AA51-01 11 7655762 7655762 G C PPFIBP2 Missense_Mutation p.L391F 0.17 deleterious(0.02) possibly_damaging(0.611) TCGA-ZF-AA51-01 11 76944218 76944218 C G GDPD4 Splice_Site p.X414_splice 0.18 TCGA-ZF-AA51-01 11 93454961 93454961 C G KIAA1731 Intron 0.39 TCGA-ZF-AA51-01 11 93468298 93468298 C G KIAA1731 3'Flank 0.17 TCGA-ZF-AA51-01 11 9466671 9466671 G T IPO7 Missense_Mutation p.G1016V 0.14 deleterious(0) possibly_damaging(0.764) TCGA-ZF-AA51-01 11 94908802 94908802 C G SESN3 Missense_Mutation p.D418H 0.21 deleterious(0) possibly_damaging(0.903) TCGA-ZF-AA51-01 12 100043262 100043262 G A FAM71C 3'UTR 0.25 TCGA-ZF-AA51-01 12 10167319 10167319 G A CLEC12B Missense_Mutation p.E130K 0.34 deleterious(0.02) benign(0.241) TCGA-ZF-AA51-01 12 101720856 101720856 C T UTP20 Intron 0.19 TCGA-ZF-AA51-01 12 102811501 102811501 T G IGF1 3'UTR 0.21 TCGA-ZF-AA51-01 12 108145474 108145474 C G PRDM4 Missense_Mutation p.D282H 0.38 deleterious(0.01) benign(0.259) TCGA-ZF-AA51-01 12 111078196 111078196 C G TCTN1 Missense_Mutation p.I284M 0.20 deleterious(0) probably_damaging(0.944) TCGA-ZF-AA51-01 12 111311690 111311690 C T CCDC63 Silent p.F138F 0.16 TCGA-ZF-AA51-01 12 112184921 112184921 G C ACAD10 Missense_Mutation p.Q806H 0.10 deleterious(0.04) possibly_damaging(0.895) TCGA-ZF-AA51-01 12 112616811 112616811 G C HECTD4 Missense_Mutation p.P3617A 0.66 benign(0.036) TCGA-ZF-AA51-01 12 112617073 112617073 C G HECTD4 Missense_Mutation p.E3560Q 0.56 probably_damaging(0.974) TCGA-ZF-AA51-01 12 11506247 11506247 G A PRB1 Missense_Mutation p.P131S 0.17 tolerated_low_confidence(0.07) unknown(0) TCGA-ZF-AA51-01 12 116450678 116450678 C G MED13L Missense_Mutation p.E402Q 0.22 deleterious(0.02) unknown(0) TCGA-ZF-AA51-01 12 11992227 11992227 C G ETV6 Missense_Mutation p.S106C 0.38 tolerated(0.22) benign(0.03) TCGA-ZF-AA51-01 12 120760074 120760074 G T PLA2G1B Missense_Mutation p.N123K 0.27 tolerated(0.59) benign(0.009) TCGA-ZF-AA51-01 12 123820972 123820972 C G SBNO1 Missense_Mutation p.E240Q 0.15 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA51-01 12 123907608 123907608 C T RILPL2 Silent p.K196K 0.17 TCGA-ZF-AA51-01 12 123907666 123907666 C T RILPL2 Missense_Mutation p.R177K 0.16 tolerated(0.96) benign(0.338) TCGA-ZF-AA51-01 12 124332536 124332536 C T DNAH10 Missense_Mutation p.P1830L 0.06 probably_damaging(0.994) TCGA-ZF-AA51-01 12 12483053 12483053 C T MANSC1 Missense_Mutation p.V402I 0.25 tolerated(0.29) benign(0.017) TCGA-ZF-AA51-01 12 132504648 132504648 C A EP400 Missense_Mutation p.F1444L 0.28 unknown(0) TCGA-ZF-AA51-01 12 21068999 21068999 T A SLCO1B3 Missense_Mutation p.F643I 0.06 tolerated(0.2) benign(0.033) TCGA-ZF-AA51-01 12 29592300 29592300 A G OVCH1 Silent p.F1075F 0.45 TCGA-ZF-AA51-01 12 29608223 29608223 C G OVCH1 Missense_Mutation p.R799T 0.26 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 12 3104133 3104133 C T TEAD4 Silent p.I67I 0.08 TCGA-ZF-AA51-01 12 31435710 31435710 G A FAM60A Missense_Mutation p.A201V 0.13 tolerated(0.18) benign(0.018) TCGA-ZF-AA51-01 12 32751511 32751511 C G FGD4 Silent p.L227L 0.04 TCGA-ZF-AA51-01 12 40037665 40037665 G C C12orf40 Missense_Mutation p.D50H 0.26 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 12 44926496 44926496 C A NELL2 Nonsense_Mutation p.E608* 0.19 TCGA-ZF-AA51-01 12 49093573 49093573 G A CCNT1 Nonsense_Mutation p.Q162* 0.19 TCGA-ZF-AA51-01 12 49743189 49743189 C T DNAJC22 Silent p.L178L 0.23 TCGA-ZF-AA51-01 12 50388223 50388223 C T RACGAP1 Missense_Mutation p.E372K 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 12 56994860 56994860 C T BAZ2A Nonsense_Mutation p.W1441* 0.28 TCGA-ZF-AA51-01 12 57113652 57113652 C T NACA Silent p.K554K 0.36 TCGA-ZF-AA51-01 12 57588350 57588350 C T LRP1 Intron 0.44 TCGA-ZF-AA51-01 12 57961297 57961297 C G KIF5A Missense_Mutation p.R204G 0.48 deleterious(0.01) benign(0.004) TCGA-ZF-AA51-01 12 7060782 7060782 C T PTPN6 Nonsense_Mutation p.R7* 0.15 TCGA-ZF-AA51-01 12 72666943 72666943 G C TRHDE Missense_Mutation p.E129Q 0.33 tolerated(0.5) benign(0.006) TCGA-ZF-AA51-01 12 75444196 75444196 T C KCNC2 Missense_Mutation p.N530S 0.17 tolerated(0.11) benign(0.002) TCGA-ZF-AA51-01 12 81675174 81675174 C G PPFIA2 Missense_Mutation p.G1025A 0.12 deleterious(0.03) probably_damaging(0.982) TCGA-ZF-AA51-01 12 8757435 8757435 G T AICDA Missense_Mutation p.R171S 0.16 tolerated(0.27) possibly_damaging(0.7) TCGA-ZF-AA51-01 12 88452740 88452740 C T CEP290 Missense_Mutation p.E2235K 0.07 benign(0.06) TCGA-ZF-AA51-01 12 92814855 92814855 C G CLLU1OS Silent p.V79V 0.35 TCGA-ZF-AA51-01 12 9353018 9353018 G C PZP Missense_Mutation p.Q233E 0.06 deleterious(0.04) benign(0.197) TCGA-ZF-AA51-01 12 936296 936296 C G WNK1 Missense_Mutation p.R341G 0.44 deleterious(0) unknown(0) TCGA-ZF-AA51-01 12 95604759 95604759 G C FGD6 Missense_Mutation p.Q101E 0.16 tolerated_low_confidence(0.36) benign(0.004) TCGA-ZF-AA51-01 12 97045378 97045378 C G C12orf55 Missense_Mutation p.R1629G 0.28 deleterious(0) probably_damaging(0.969) TCGA-ZF-AA51-01 12 9885610 9885610 A G CLECL1 Missense_Mutation p.V84A 0.16 deleterious(0) benign(0.139) TCGA-ZF-AA51-01 13 100617675 100617675 C G ZIC5 Missense_Mutation p.E650Q 0.25 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA51-01 13 113889383 113889383 G C CUL4A Missense_Mutation p.E258Q 0.36 tolerated(0.24) benign(0.127) TCGA-ZF-AA51-01 13 114303727 114303727 C G ATP4B Missense_Mutation p.E280Q 0.23 tolerated(0.19) probably_damaging(1) TCGA-ZF-AA51-01 13 41340884 41340884 C T MRPS31 Silent p.K146K 0.41 TCGA-ZF-AA51-01 13 41897194 41897194 G C NAA16 Missense_Mutation p.E135D 0.05 tolerated(0.63) benign(0.174) TCGA-ZF-AA51-01 13 46942248 46942248 G C KIAA0226L Missense_Mutation p.S252C 0.40 tolerated(0.08) possibly_damaging(0.827) TCGA-ZF-AA51-01 13 52650273 52650273 C G NEK5 Missense_Mutation p.E552Q 0.09 tolerated(0.05) possibly_damaging(0.886) TCGA-ZF-AA51-01 13 66878835 66878835 A C PCDH9 Nonsense_Mutation p.Y1222* 0.11 TCGA-ZF-AA51-01 13 66878845 66878845 A G PCDH9 Missense_Mutation p.L1219P 0.10 tolerated(0.06) possibly_damaging(0.585) TCGA-ZF-AA51-01 13 77641943 77641943 G A MYCBP2 Silent p.S4038S 0.36 TCGA-ZF-AA51-01 13 77641944 77641944 C A MYCBP2 Missense_Mutation p.S4038I 0.37 probably_damaging(0.983) TCGA-ZF-AA51-01 13 96438198 96438198 C T DNAJC3 Nonsense_Mutation p.Q361* 0.23 TCGA-ZF-AA51-01 13 99498236 99498236 C G DOCK9 Missense_Mutation p.M1357I 0.35 tolerated(0.4) benign(0.001) TCGA-ZF-AA51-01 13 99853753 99853753 C T UBAC2 Intron 0.29 TCGA-ZF-AA51-01 13 99908020 99908020 C G GPR18 Missense_Mutation p.G36A 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.15 TCGA-ZF-AA51-01 14 103988660 103988660 G A CKB Silent p.I57I 0.35 TCGA-ZF-AA51-01 14 105178831 105178831 G A INF2 Missense_Mutation p.E851K 0.17 tolerated(0.19) unknown(0) TCGA-ZF-AA51-01 14 105452861 105452861 G C C14orf79 Silent p.L31L 0.26 TCGA-ZF-AA51-01 14 21458114 21458114 G T METTL17 5'Flank 0.33 TCGA-ZF-AA51-01 14 22386865 22386865 C A TRAV13-2 Missense_Mutation p.H92N 0.17 deleterious(0.05) benign(0.071) TCGA-ZF-AA51-01 14 22671077 22671077 G C TRAV26-2 Missense_Mutation p.D48H 0.26 deleterious(0) possibly_damaging(0.896) TCGA-ZF-AA51-01 14 23519028 23519028 C T CDH24 Intron 0.33 TCGA-ZF-AA51-01 14 24779770 24779770 G T LTB4R2 5'UTR 0.33 TCGA-ZF-AA51-01 14 24802090 24802090 C T ADCY4 Nonsense_Mutation p.W88* 0.24 TCGA-ZF-AA51-01 14 24878016 24878016 C T NYNRIN Missense_Mutation p.S339L 0.25 deleterious_low_confidence(0) benign(0.424) TCGA-ZF-AA51-01 14 24878189 24878189 C G NYNRIN Missense_Mutation p.L397V 0.25 tolerated_low_confidence(0.07) benign(0.01) TCGA-ZF-AA51-01 14 24977459 24977459 C A RP11-80A15.1 Silent p.A87A 0.18 TCGA-ZF-AA51-01 14 30046422 30046422 G C PRKD1 3'UTR 0.21 TCGA-ZF-AA51-01 14 31782177 31782177 C T AL136418.1 3'Flank 0.16 TCGA-ZF-AA51-01 14 38723989 38723989 C G CLEC14A Missense_Mutation p.L413F 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 14 39782546 39782546 A T CTAGE5 Missense_Mutation p.K404I 0.12 deleterious(0) probably_damaging(0.963) TCGA-ZF-AA51-01 14 39782547 39782547 A T CTAGE5 Missense_Mutation p.K404N 0.12 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA51-01 14 51379841 51379841 C G PYGL Missense_Mutation p.G509A 0.23 deleterious(0) probably_damaging(0.987) TCGA-ZF-AA51-01 14 60590987 60590987 G C PCNXL4 Missense_Mutation p.D466H 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 14 64701857 64701857 G C ESR2 Missense_Mutation p.L413V 0.17 tolerated(0.23) benign(0.002) TCGA-ZF-AA51-01 14 69346680 69346680 C T ACTN1 Missense_Mutation p.R760Q 0.24 deleterious(0) benign(0.311) TCGA-ZF-AA51-01 14 72139167 72139167 G A SIPA1L1 Missense_Mutation p.E978K 0.16 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA51-01 14 81259106 81259106 G A CEP128 Nonsense_Mutation p.Q520* 0.26 TCGA-ZF-AA51-01 14 81302621 81302621 G C CEP128 Missense_Mutation p.Q329E 0.27 tolerated(0.28) benign(0.014) TCGA-ZF-AA51-01 14 89878715 89878715 G A FOXN3 Nonsense_Mutation p.Q36* 0.33 TCGA-ZF-AA51-01 14 90650876 90650876 G C KCNK13 Missense_Mutation p.E252D 0.18 tolerated(0.42) benign(0.008) TCGA-ZF-AA51-01 14 93650053 93650053 C T MOAP1 Missense_Mutation p.E179K 0.14 tolerated(0.06) probably_damaging(0.919) TCGA-ZF-AA51-01 14 95109918 95109918 C G SERPINA13P RNA 0.22 TCGA-ZF-AA51-01 15 21051161 21051161 C G POTEB2 Splice_Site p.X433_splice 0.11 TCGA-ZF-AA51-01 15 24922370 24922370 G T NPAP1 Missense_Mutation p.E452D 0.09 tolerated(0.25) benign(0.055) TCGA-ZF-AA51-01 15 42840305 42840305 C A LRRC57 Silent p.L74L 0.24 TCGA-ZF-AA51-01 15 52903368 52903368 C T FAM214A Silent p.L163L 0.31 TCGA-ZF-AA51-01 15 52903803 52903803 C G FAM214A Missense_Mutation p.E125Q 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 15 59172124 59172124 C G SLTM 3'UTR 0.54 TCGA-ZF-AA51-01 15 63882911 63882911 C G USP3 Missense_Mutation p.F483L 0.04 deleterious(0.02) benign(0.438) TCGA-ZF-AA51-01 15 64428526 64428526 C T SNX1 Intron 0.42 TCGA-ZF-AA51-01 15 64429794 64429794 C A SNX1 Intron 0.45 TCGA-ZF-AA51-01 15 65491157 65491157 C A CILP Silent p.R489R 0.25 TCGA-ZF-AA51-01 15 66044729 66044729 G C DENND4A Silent p.L183L 0.13 TCGA-ZF-AA51-01 15 69548288 69548288 G C GLCE Missense_Mutation p.R48T 0.15 tolerated_low_confidence(0.08) benign(0.056) TCGA-ZF-AA51-01 15 72189913 72189913 C G MYO9A Missense_Mutation p.R1644T 0.26 tolerated_low_confidence(0.4) benign(0.41) TCGA-ZF-AA51-01 15 81294881 81294881 C G MESDC1 Missense_Mutation p.S90C 0.11 deleterious(0.01) benign(0.048) TCGA-ZF-AA51-01 15 81592368 81592368 G A IL16 Missense_Mutation p.E901K 0.21 tolerated(0.4) benign(0.006) TCGA-ZF-AA51-01 15 89744655 89744655 G A ABHD2 3'UTR 0.17 TCGA-ZF-AA51-01 15 93540221 93540221 C G CHD2 Missense_Mutation p.I1210M 0.40 deleterious(0.02) benign(0.011) TCGA-ZF-AA51-01 15 93557924 93557924 A T CHD2 Splice_Site p.X1565_splice 0.21 TCGA-ZF-AA51-01 15 93609441 93609441 C T RGMA Intron 0.22 TCGA-ZF-AA51-01 16 11859511 11859511 G C ZC3H7A Nonsense_Mutation p.S518* 0.24 TCGA-ZF-AA51-01 16 18877945 18877945 C T SMG1 Silent p.G1116G 0.30 TCGA-ZF-AA51-01 16 20963831 20963831 C A DNAH3 Missense_Mutation p.R3704S 0.42 deleterious(0.02) possibly_damaging(0.728) TCGA-ZF-AA51-01 16 27492442 27492442 G A GTF3C1 Missense_Mutation p.S1385F 0.52 deleterious(0.01) possibly_damaging(0.547) TCGA-ZF-AA51-01 16 29088001 29088001 G C RRN3P2 RNA 0.26 TCGA-ZF-AA51-01 16 31391162 31391162 G A ITGAX Missense_Mutation p.D985N 0.26 tolerated(0.55) benign(0.016) TCGA-ZF-AA51-01 16 4042323 4042323 G A ADCY9 Silent p.L677L 0.43 TCGA-ZF-AA51-01 16 48125064 48125064 G C ABCC12 Missense_Mutation p.F1084L 0.49 tolerated(0.12) benign(0.106) TCGA-ZF-AA51-01 16 51174590 51174590 C G SALL1 Missense_Mutation p.E515Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 16 53860020 53860020 C T FTO Missense_Mutation p.S123F 0.38 tolerated(0.68) possibly_damaging(0.562) TCGA-ZF-AA51-01 16 55690822 55690822 C T SLC6A2 Silent p.F72F 0.22 TCGA-ZF-AA51-01 16 67267925 67267925 C G FHOD1 Missense_Mutation p.E561Q 0.20 tolerated(0.22) probably_damaging(0.934) TCGA-ZF-AA51-01 16 67281174 67281174 C T FHOD1 Missense_Mutation p.G47E 0.58 tolerated(1) possibly_damaging(0.677) TCGA-ZF-AA51-01 16 68225423 68225423 C T NFATC3 Missense_Mutation p.P951S 0.27 tolerated_low_confidence(0.11) probably_damaging(0.999) TCGA-ZF-AA51-01 16 69969881 69969881 C G WWP2 Silent p.V656V 0.29 TCGA-ZF-AA51-01 16 70349882 70349882 T G DDX19B Silent p.A57A 0.25 TCGA-ZF-AA51-01 16 70349884 70349884 C T DDX19B Missense_Mutation p.A58V 0.25 tolerated(0.1) benign(0.012) TCGA-ZF-AA51-01 16 71606217 71606217 G C TAT Missense_Mutation p.S193C 0.11 tolerated(0.09) benign(0.003) TCGA-ZF-AA51-01 16 84132724 84132724 C G MBTPS1 Missense_Mutation p.D119H 0.17 tolerated(0.1) benign(0.281) TCGA-ZF-AA51-01 16 84520349 84520349 G C TLDC1 Silent p.L282L 0.21 TCGA-ZF-AA51-01 16 90128810 90128810 G A PRDM7 Silent p.L203L 0.20 TCGA-ZF-AA51-01 16 90161914 90161914 T C TUBB8P7 RNA 0.21 TCGA-ZF-AA51-01 17 10212682 10212682 G A MYH13 Missense_Mutation p.R1680C 0.12 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA51-01 17 11787043 11787043 G T DNAH9 Missense_Mutation p.Q3649H 0.08 benign(0.002) TCGA-ZF-AA51-01 17 12896111 12896111 C T ELAC2 3'UTR 0.50 TCGA-ZF-AA51-01 17 18003719 18003719 C T DRG2 Silent p.L170L 0.20 TCGA-ZF-AA51-01 17 18566063 18566063 G C ZNF286B Silent p.L252L 0.40 TCGA-ZF-AA51-01 17 19559772 19559772 G T ALDH3A2 Missense_Mutation p.V189F 0.23 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA51-01 17 27370262 27370262 C A PIPOX Missense_Mutation p.L7I 0.17 tolerated(0.23) benign(0.007) TCGA-ZF-AA51-01 17 36734904 36734904 G C SRCIN1 Missense_Mutation p.R55G 0.50 deleterious(0) possibly_damaging(0.797) TCGA-ZF-AA51-01 17 38320215 38320215 G A CASC3 Missense_Mutation p.E423K 0.39 tolerated_low_confidence(0.1) benign(0.367) TCGA-ZF-AA51-01 17 38637021 38637021 C T TNS4 Splice_Site p.X558_splice 0.23 TCGA-ZF-AA51-01 17 39525672 39525672 C G KRT33B Missense_Mutation p.E111Q 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-ZF-AA51-01 17 42254007 42254007 C G ASB16 Intron 0.22 TCGA-ZF-AA51-01 17 42254125 42254125 G T ASB16 Nonsense_Mutation p.E197* 0.29 TCGA-ZF-AA51-01 17 45669349 45669349 G C NPEPPS Missense_Mutation p.D430H 0.09 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA51-01 17 53045689 53045689 G A COX11 Silent p.L107L 0.41 TCGA-ZF-AA51-01 17 57232528 57232528 G C SKA2 5'UTR 0.09 TCGA-ZF-AA51-01 17 58300841 58300841 C T USP32 Silent p.L513L 0.12 TCGA-ZF-AA51-01 17 59489287 59489287 C G C17orf82 5'UTR 0.41 TCGA-ZF-AA51-01 17 61790876 61790876 C G STRADA Missense_Mutation p.E80Q 0.20 tolerated(0.17) probably_damaging(0.944) TCGA-ZF-AA51-01 17 61904001 61904001 G T FTSJ3 Silent p.I33I 0.24 TCGA-ZF-AA51-01 17 62892305 62892305 G A LRRC37A3 Silent p.I357I 0.21 TCGA-ZF-AA51-01 17 65105757 65105757 G C HELZ Missense_Mutation p.P1322A 0.43 tolerated_low_confidence(0.09) benign(0.022) TCGA-ZF-AA51-01 17 65914842 65914842 G A BPTF Silent p.Q1772Q 0.19 TCGA-ZF-AA51-01 17 67092798 67092798 G C ABCA6 Missense_Mutation p.L1089V 0.19 tolerated(0.42) benign(0.004) TCGA-ZF-AA51-01 17 67092856 67092856 G T ABCA6 Missense_Mutation p.F1069L 0.24 tolerated(0.09) benign(0.029) TCGA-ZF-AA51-01 17 67114092 67114092 C G ABCA6 Missense_Mutation p.R481T 0.32 deleterious(0.01) possibly_damaging(0.883) TCGA-ZF-AA51-01 17 68171347 68171347 T C KCNJ2 Missense_Mutation p.V56A 0.13 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 17 72954796 72954796 G C HID1 Missense_Mutation p.F404L 0.28 deleterious(0.01) benign(0.039) TCGA-ZF-AA51-01 17 73201825 73201825 G A NUP85 5'UTR 0.16 TCGA-ZF-AA51-01 17 7366392 7366392 C G ZBTB4 Missense_Mutation p.E637Q 0.70 benign(0.441) TCGA-ZF-AA51-01 17 75493399 75493399 G C SEPT9 Missense_Mutation p.E526Q 0.25 deleterious(0.01) probably_damaging(0.911) TCGA-ZF-AA51-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.49 TCGA-ZF-AA51-01 17 7829275 7829275 G C KCNAB3 Missense_Mutation p.I156M 0.52 deleterious(0) possibly_damaging(0.847) TCGA-ZF-AA51-01 17 79657710 79657710 G A HGS Missense_Mutation p.D159N 0.15 tolerated(0.15) probably_damaging(0.971) TCGA-ZF-AA51-01 17 80019827 80019827 C G DUS1L Missense_Mutation p.Q181H 0.10 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA51-01 17 80890597 80890597 C G TBCD Missense_Mutation p.F1059L 0.22 tolerated(0.2) benign(0.107) TCGA-ZF-AA51-01 17 9801509 9801509 T A RCVRN Missense_Mutation p.E169V 0.16 tolerated(0.28) probably_damaging(0.916) TCGA-ZF-AA51-01 18 14791438 14791438 A T ANKRD30B Missense_Mutation p.L591F 0.14 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-ZF-AA51-01 18 20964995 20964995 C G TMEM241 Missense_Mutation p.E106Q 0.13 deleterious(0.01) possibly_damaging(0.726) TCGA-ZF-AA51-01 18 22029844 22029844 G T IMPACT Missense_Mutation p.G274V 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 18 3173978 3173978 C T MYOM1 Missense_Mutation p.E378K 0.17 tolerated(0.06) benign(0.071) TCGA-ZF-AA51-01 18 40853974 40853974 C T SYT4 Silent p.K140K 0.11 TCGA-ZF-AA51-01 18 43664138 43664138 C T ATP5A1 3'UTR 0.36 TCGA-ZF-AA51-01 18 70209071 70209071 T A CBLN2 Missense_Mutation p.S109C 0.42 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA51-01 19 10624718 10624718 C T S1PR5 Missense_Mutation p.G324R 0.10 tolerated(0.28) benign(0.401) TCGA-ZF-AA51-01 19 1112019 1112019 G A SBNO2 Silent p.L892L 0.12 TCGA-ZF-AA51-01 19 11305196 11305196 C G KANK2 5'UTR 0.14 TCGA-ZF-AA51-01 19 11489438 11489440 TCT - EPOR In_Frame_Del p.K281del 0.12 TCGA-ZF-AA51-01 19 12089721 12089721 C G ZNF763 Missense_Mutation p.L331V 0.11 tolerated(0.07) benign(0.017) TCGA-ZF-AA51-01 19 12384228 12384228 T C ZNF44 Missense_Mutation p.Y329C 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 19 12984486 12984486 C T MAST1 Missense_Mutation p.S1172L 0.35 deleterious(0) possibly_damaging(0.45) TCGA-ZF-AA51-01 19 13227003 13227003 C T TRMT1 Missense_Mutation p.E71K 0.47 tolerated(0.17) benign(0.094) TCGA-ZF-AA51-01 19 13923877 13923877 A T ZSWIM4 Missense_Mutation p.Q360L 0.15 tolerated(0.22) benign(0.145) TCGA-ZF-AA51-01 19 14640521 14640521 G A TECR Missense_Mutation p.E5K 0.10 tolerated(0.07) benign(0.012) TCGA-ZF-AA51-01 19 1466484 1466484 G C APC2 Missense_Mutation p.E1062Q 0.45 benign(0.178) TCGA-ZF-AA51-01 19 15338883 15338883 G T EPHX3 Missense_Mutation p.F215L 0.29 tolerated(1) benign(0.001) TCGA-ZF-AA51-01 19 16798977 16798977 C G TMEM38A Nonsense_Mutation p.S232* 0.14 TCGA-ZF-AA51-01 19 18860678 18860678 G A CRTC1 Silent p.Q193Q 0.30 TCGA-ZF-AA51-01 19 19823881 19823881 C G ZNF14 Missense_Mutation p.R70T 0.34 tolerated(0.05) benign(0.321) TCGA-ZF-AA51-01 19 21934542 21934542 C G ZNF100 Intron 0.28 TCGA-ZF-AA51-01 19 2290237 2290237 C G LINGO3 Missense_Mutation p.E513D 0.20 tolerated(0.77) benign(0) TCGA-ZF-AA51-01 19 2290278 2290278 C A LINGO3 Nonsense_Mutation p.E500* 0.24 TCGA-ZF-AA51-01 19 23405454 23405454 C - ZNF724P Frame_Shift_Del p.K532Nfs*23 0.14 TCGA-ZF-AA51-01 19 23405458 23405458 C G ZNF724P Missense_Mutation p.G530A 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-ZF-AA51-01 19 23844937 23844937 C T ZNF675 Missense_Mutation p.E69K 0.16 tolerated(0.11) possibly_damaging(0.636) TCGA-ZF-AA51-01 19 24310125 24310125 A C ZNF254 Missense_Mutation p.K441N 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-ZF-AA51-01 19 24310715 24310715 C T ZNF254 Missense_Mutation p.A638V 0.12 tolerated(0.08) benign(0.178) TCGA-ZF-AA51-01 19 33355550 33355550 C A SLC7A9 Missense_Mutation p.V74F 0.08 tolerated(0.13) benign(0.158) TCGA-ZF-AA51-01 19 36205943 36205943 G A ZBTB32 Missense_Mutation p.E139K 0.44 tolerated(0.15) benign(0.292) TCGA-ZF-AA51-01 19 36279015 36279015 C G ARHGAP33 Missense_Mutation p.S1022C 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ZF-AA51-01 19 36279068 36279068 C A ARHGAP33 Missense_Mutation p.P1040T 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ZF-AA51-01 19 36727581 36727581 C T ZNF146 Missense_Mutation p.S80L 0.17 deleterious(0) benign(0.11) TCGA-ZF-AA51-01 19 3789324 3789324 C T MATK Missense_Mutation p.E8K 0.23 deleterious_low_confidence(0) benign(0.292) TCGA-ZF-AA51-01 19 38990358 38990358 G A RYR1 Missense_Mutation p.E2371K 0.54 benign(0.043) TCGA-ZF-AA51-01 19 39819122 39819122 G A GMFG Missense_Mutation p.R142C 0.19 deleterious(0) probably_damaging(0.97) TCGA-ZF-AA51-01 19 40376912 40376912 G - FCGBP Frame_Shift_Del p.P3837Rfs*50 0.29 TCGA-ZF-AA51-01 19 41810097 41810097 G C HNRNPUL1 Missense_Mutation p.K731N 0.25 deleterious_low_confidence(0.03) benign(0.403) TCGA-ZF-AA51-01 19 41916898 41916898 A G BCKDHA Missense_Mutation p.Y120C 0.31 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA51-01 19 42225092 42225092 C G CEACAM5 Silent p.V674V 0.22 TCGA-ZF-AA51-01 19 42907083 42907083 C G LIPE Silent p.L881L 0.18 TCGA-ZF-AA51-01 19 44501429 44501429 C T ZNF155 Missense_Mutation p.H485Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA51-01 19 44891852 44891853 GA - ZNF285 Frame_Shift_Del p.L185Qfs*6 0.08 TCGA-ZF-AA51-01 19 45857993 45857993 C G ERCC2 Missense_Mutation p.E554Q 0.47 deleterious(0.04) possibly_damaging(0.827) TCGA-ZF-AA51-01 19 45862128 45862128 G C ERCC2 Intron 0.27 TCGA-ZF-AA51-01 19 46120036 46120036 G A EML2 Silent p.V667V 0.10 TCGA-ZF-AA51-01 19 46120942 46120942 G A EML2 Missense_Mutation p.S624L 0.43 deleterious(0.03) possibly_damaging(0.905) TCGA-ZF-AA51-01 19 4817058 4817058 G A TICAM1 Silent p.D444D 0.14 TCGA-ZF-AA51-01 19 49207215 49207215 C T FUT2 Silent p.A334A 0.19 TCGA-ZF-AA51-01 19 49303531 49303531 G C BCAT2 Missense_Mutation p.F108L 0.20 deleterious(0) possibly_damaging(0.569) TCGA-ZF-AA51-01 19 49519550 49519550 C T LHB Silent p.A67A 0.07 TCGA-ZF-AA51-01 19 49622065 49622065 G A C19orf73 Missense_Mutation p.S72F 0.55 deleterious_low_confidence(0) benign(0.403) TCGA-ZF-AA51-01 19 49858459 49858459 G T TEAD2 Missense_Mutation p.S162Y 0.14 tolerated(0.36) benign(0.005) TCGA-ZF-AA51-01 19 49933880 49933880 C T SLC17A7 Missense_Mutation p.E527K 0.37 tolerated(0.3) benign(0.016) TCGA-ZF-AA51-01 19 50167973 50167973 G A IRF3 Silent p.G41G 0.45 TCGA-ZF-AA51-01 19 51298100 51298100 C G ACPT Silent p.L348L 0.23 TCGA-ZF-AA51-01 19 5211777 5211777 C T PTPRS Silent p.R1686R 0.17 TCGA-ZF-AA51-01 19 52937307 52937307 G C ZNF534 Missense_Mutation p.E39Q 0.12 deleterious(0) probably_damaging(0.96) TCGA-ZF-AA51-01 19 54327330 54327330 C T NLRP12 Silent p.G33G 0.13 TCGA-ZF-AA51-01 19 56113490 56113490 C G ZNF524 Silent p.P4P 0.06 TCGA-ZF-AA51-01 19 56895183 56895183 C T ZNF582 3'UTR 0.22 TCGA-ZF-AA51-01 19 57036445 57036445 C G ZNF471 Missense_Mutation p.Q337E 0.14 deleterious(0) probably_damaging(0.949) TCGA-ZF-AA51-01 19 57286545 57286545 G A ZIM2 Silent p.F365F 0.40 TCGA-ZF-AA51-01 19 57746784 57746784 G C AURKC Nonstop_Mutation p.*310Sext*39 0.41 TCGA-ZF-AA51-01 19 57839842 57839842 C T ZNF543 Missense_Mutation p.P338S 0.25 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA51-01 19 58018640 58018640 G T ZNF773 Missense_Mutation p.G393W 0.09 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 19 58059268 58059268 G C ZNF550 Missense_Mutation p.S74C 0.25 deleterious(0.04) benign(0.004) TCGA-ZF-AA51-01 19 58489891 58489891 C G ZNF606 Missense_Mutation p.E719D 0.43 tolerated(0.24) possibly_damaging(0.815) TCGA-ZF-AA51-01 19 58773128 58773128 G - ZNF544 Frame_Shift_Del p.K387Nfs*93 0.19 TCGA-ZF-AA51-01 19 58773494 58773494 G C ZNF544 Missense_Mutation p.V508L 0.20 tolerated(0.3) benign(0.023) TCGA-ZF-AA51-01 19 58928190 58928190 G A ZNF584 Missense_Mutation p.R102K 0.12 tolerated(0.62) benign(0.057) TCGA-ZF-AA51-01 19 6935042 6935042 G C EMR1 Missense_Mutation p.Q778H 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-ZF-AA51-01 19 7584149 7584149 C T CTD-2207O23.12 Missense_Mutation p.S40L 0.12 unknown(0) TCGA-ZF-AA51-01 19 7964331 7964331 C G LRRC8E Silent p.L308L 0.17 TCGA-ZF-AA51-01 19 8000015 8000015 C G TIMM44 Missense_Mutation p.E110Q 0.16 deleterious(0.02) probably_damaging(0.987) TCGA-ZF-AA51-01 19 9089781 9089781 G C MUC16 Silent p.V678V 0.39 TCGA-ZF-AA51-01 1 100155161 100155161 G A PALMD Missense_Mutation p.D449N 0.16 tolerated(0.07) possibly_damaging(0.87) TCGA-ZF-AA51-01 1 100330038 100330038 C G AGL Nonsense_Mutation p.S186* 0.25 TCGA-ZF-AA51-01 1 101704510 101704510 C T S1PR1 5'UTR 0.23 TCGA-ZF-AA51-01 1 110459912 110459912 C T CSF1 Intron 0.36 TCGA-ZF-AA51-01 1 110765807 110765807 C G KCNC4 Missense_Mutation p.I300M 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA51-01 1 11076934 11076934 C A TARDBP Nonsense_Mutation p.S91* 0.28 TCGA-ZF-AA51-01 1 112019436 112019436 C G C1orf162 Silent p.L18L 0.26 TCGA-ZF-AA51-01 1 114967341 114967341 C G TRIM33 Missense_Mutation p.G578R 0.45 tolerated(0.07) possibly_damaging(0.642) TCGA-ZF-AA51-01 1 12939599 12939599 C G PRAMEF4 Silent p.L401L 0.29 TCGA-ZF-AA51-01 1 144865880 144865880 G C PDE4DIP Silent p.L1900L 0.23 TCGA-ZF-AA51-01 1 145609227 145609227 C G POLR3C Missense_Mutation p.R37T 0.36 deleterious(0.03) benign(0.238) TCGA-ZF-AA51-01 1 145764890 145764890 T C GPR89A 3'UTR 0.16 TCGA-ZF-AA51-01 1 151018334 151018334 C G BNIPL Missense_Mutation p.L305V 0.44 deleterious(0.03) benign(0.032) TCGA-ZF-AA51-01 1 151020727 151020727 C T C1orf56 Missense_Mutation p.S135F 0.52 tolerated(0.11) probably_damaging(0.919) TCGA-ZF-AA51-01 1 151214973 151214973 G A PIP5K1A Missense_Mutation p.E524K 0.26 tolerated_low_confidence(0.34) benign(0.196) TCGA-ZF-AA51-01 1 154988247 154988247 G A ZBTB7B Missense_Mutation p.E405K 0.21 deleterious(0) possibly_damaging(0.889) TCGA-ZF-AA51-01 1 155039418 155039418 C T EFNA4 Missense_Mutation p.S109L 0.24 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA51-01 1 155160209 155160209 G C MUC1 Nonsense_Mutation p.S357* 0.27 TCGA-ZF-AA51-01 1 155290466 155290466 C G RUSC1 5'Flank 0.35 TCGA-ZF-AA51-01 1 155290699 155290699 C T RUSC1 5'Flank 0.31 TCGA-ZF-AA51-01 1 155291021 155291021 C T RUSC1 Intron 0.17 TCGA-ZF-AA51-01 1 155291481 155291481 C G RUSC1 Intron 0.54 TCGA-ZF-AA51-01 1 155291799 155291799 C T RUSC1 Missense_Mutation p.P79S 0.42 tolerated_low_confidence(0.12) benign(0.004) TCGA-ZF-AA51-01 1 155783560 155783560 G A GON4L Silent p.I439I 0.24 TCGA-ZF-AA51-01 1 156144686 156144686 C - SEMA4A Frame_Shift_Del p.P464Lfs*20 0.12 TCGA-ZF-AA51-01 1 156238196 156238196 C G SMG5 Missense_Mutation p.E242Q 0.45 deleterious(0.01) possibly_damaging(0.53) TCGA-ZF-AA51-01 1 156721132 156721132 C T HDGF Intron 0.36 TCGA-ZF-AA51-01 1 158582732 158582732 C G SPTA1 Missense_Mutation p.E2337Q 0.16 tolerated(1) benign(0.221) TCGA-ZF-AA51-01 1 158724754 158724754 G A OR6K6 Missense_Mutation p.R50K 0.18 tolerated(0.35) benign(0.001) TCGA-ZF-AA51-01 1 158725016 158725016 C T OR6K6 Silent p.I137I 0.21 TCGA-ZF-AA51-01 1 158725567 158725567 A C OR6K6 Missense_Mutation p.N321T 0.07 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA51-01 1 158736082 158736082 G A OR6N1 Missense_Mutation p.H131Y 0.14 deleterious(0) possibly_damaging(0.635) TCGA-ZF-AA51-01 1 159284232 159284232 C T OR10J3 Missense_Mutation p.C73Y 0.10 deleterious(0.01) benign(0.022) TCGA-ZF-AA51-01 1 1636406 1636406 G A CDK11A Silent p.I465I 0.37 TCGA-ZF-AA51-01 1 165667796 165667796 G C ALDH9A1 5'UTR 0.44 TCGA-ZF-AA51-01 1 17708559 17708559 G C PADI6 RNA 0.30 TCGA-ZF-AA51-01 1 182852729 182852729 G C DHX9 Missense_Mutation p.K1073N 0.23 tolerated(0.06) possibly_damaging(0.849) TCGA-ZF-AA51-01 1 183616819 183616819 C G APOBEC4 Missense_Mutation p.K366N 0.15 deleterious(0.01) unknown(0) TCGA-ZF-AA51-01 1 19585286 19585286 G C MRTO4 Missense_Mutation p.E228Q 0.22 tolerated(0.23) unknown(0) TCGA-ZF-AA51-01 1 197073531 197073531 C A ASPM Missense_Mutation p.R1617L 0.24 deleterious(0) probably_damaging(0.954) TCGA-ZF-AA51-01 1 198682129 198682129 C G PTPRC Missense_Mutation p.Q407E 0.25 tolerated(1) benign(0.001) TCGA-ZF-AA51-01 1 200971448 200971448 C T KIF21B Missense_Mutation p.E415K 0.18 deleterious(0) benign(0.152) TCGA-ZF-AA51-01 1 202096982 202096982 C T GPR37L1 Silent p.I248I 0.23 TCGA-ZF-AA51-01 1 203652429 203652429 C T ATP2B4 Silent p.L32L 0.32 TCGA-ZF-AA51-01 1 204380369 204380369 C G PPP1R15B Missense_Mutation p.E57D 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.575) TCGA-ZF-AA51-01 1 205041086 205041086 G C CNTN2 Missense_Mutation p.W852C 0.35 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 1 205052985 205052985 G C TMEM81 Missense_Mutation p.S155C 0.32 deleterious(0) probably_damaging(0.935) TCGA-ZF-AA51-01 1 207196772 207196772 C G C1orf116 Missense_Mutation p.E113Q 0.10 tolerated(0.97) benign(0.002) TCGA-ZF-AA51-01 1 207318075 207318075 G C C4BPA 3'UTR 0.20 TCGA-ZF-AA51-01 1 210273416 210273416 A G SYT14 Silent p.E303E 0.31 TCGA-ZF-AA51-01 1 211487184 211487184 G C RCOR3 3'UTR 0.60 TCGA-ZF-AA51-01 1 215256745 215256745 C A KCNK2 Nonsense_Mutation p.S6* 0.30 TCGA-ZF-AA51-01 1 218036153 218036153 C G SPATA17 Nonsense_Mutation p.S348* 0.29 TCGA-ZF-AA51-01 1 22183587 22183587 C G HSPG2 Silent p.L1832L 0.45 TCGA-ZF-AA51-01 1 22204973 22204973 C G HSPG2 Missense_Mutation p.G857A 0.35 probably_damaging(1) TCGA-ZF-AA51-01 1 224444798 224444798 G C NVL Intron 0.28 TCGA-ZF-AA51-01 1 22915528 22915528 G A EPHA8 Missense_Mutation p.G382S 0.35 tolerated(0.63) benign(0.005) TCGA-ZF-AA51-01 1 22924263 22924263 G A EPHA8 Silent p.E675E 0.41 TCGA-ZF-AA51-01 1 231337118 231337118 G A TRIM67 Silent p.L463L 0.30 TCGA-ZF-AA51-01 1 231374697 231374697 G T C1orf131 Missense_Mutation p.S119Y 0.34 deleterious(0.03) possibly_damaging(0.509) TCGA-ZF-AA51-01 1 236189248 236189248 C T NID1 Silent p.Q644Q 0.04 TCGA-ZF-AA51-01 1 23688365 23688365 G C ZNF436 3'UTR 0.29 TCGA-ZF-AA51-01 1 23688594 23688594 G A ZNF436 Silent p.F427F 0.28 TCGA-ZF-AA51-01 1 245852042 245852042 C G KIF26B Missense_Mutation p.S1919R 0.10 deleterious(0.01) unknown(0) TCGA-ZF-AA51-01 1 247151090 247151090 C T ZNF695 Missense_Mutation p.E243K 0.40 tolerated(0.2) benign(0.292) TCGA-ZF-AA51-01 1 247587973 247587973 T G NLRP3 Missense_Mutation p.F410V 0.10 deleterious(0) possibly_damaging(0.721) TCGA-ZF-AA51-01 1 247902395 247902395 G T OR14K1 Missense_Mutation p.G160V 0.36 tolerated(0.12) possibly_damaging(0.606) TCGA-ZF-AA51-01 1 248263103 248263103 G A OR2L13 Silent p.K142K 0.31 TCGA-ZF-AA51-01 1 248344279 248344279 C T OR2M2 Missense_Mutation p.S331F 0.30 deleterious_low_confidence(0.04) unknown(0) TCGA-ZF-AA51-01 1 27087458 27087458 C T ARID1A Nonsense_Mutation p.Q678* 0.27 TCGA-ZF-AA51-01 1 27106387 27106387 G C ARID1A Missense_Mutation p.E2000Q 0.27 probably_damaging(0.913) TCGA-ZF-AA51-01 1 27106512 27106512 G A ARID1A Silent p.V2041V 0.18 TCGA-ZF-AA51-01 1 29647256 29647256 C G PTPRU Silent p.P1259P 0.27 TCGA-ZF-AA51-01 1 31465481 31465481 G C PUM1 Missense_Mutation p.S305C 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-ZF-AA51-01 1 32146636 32146636 G A COL16A1 Silent p.L857L 0.37 TCGA-ZF-AA51-01 1 32221627 32221627 C G BAI2 Missense_Mutation p.D271H 0.20 tolerated(0.14) benign(0.227) TCGA-ZF-AA51-01 1 33135116 33135116 G A RBBP4 Silent p.L306L 0.25 TCGA-ZF-AA51-01 1 37337945 37337945 G A GRIK3 Silent p.I192I 0.15 TCGA-ZF-AA51-01 1 39888501 39888501 G C MACF1 Missense_Mutation p.E3298Q 0.39 possibly_damaging(0.806) TCGA-ZF-AA51-01 1 41236499 41236499 G A NFYC Silent p.%3D 0.09 TCGA-ZF-AA51-01 1 43011226 43011226 G A CCDC30 Missense_Mutation p.R134Q 0.13 tolerated(0.06) benign(0.124) TCGA-ZF-AA51-01 1 43805739 43805739 C T MPL Silent p.L265L 0.13 TCGA-ZF-AA51-01 1 43805747 43805747 C G MPL Missense_Mutation p.S268C 0.16 tolerated(0.17) probably_damaging(0.979) TCGA-ZF-AA51-01 1 44083518 44083518 G A PTPRF Missense_Mutation p.R1436K 0.12 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 1 44476472 44476472 A G SLC6A9 Missense_Mutation p.L111P 0.40 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 1 45253367 45253367 G A BEST4 Missense_Mutation p.S4L 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 1 45269843 45269843 G A PLK3 Missense_Mutation p.E423K 0.34 tolerated(0.42) benign(0.184) TCGA-ZF-AA51-01 1 46093957 46093957 C T GPBP1L1 Missense_Mutation p.E466K 0.35 deleterious_low_confidence(0.01) benign(0.237) TCGA-ZF-AA51-01 1 52703213 52703213 C A ZFYVE9 Missense_Mutation p.P42T 0.24 deleterious_low_confidence(0.02) benign(0.008) TCGA-ZF-AA51-01 1 53073984 53073984 C T GPX7 Missense_Mutation p.P151S 0.33 tolerated(0.13) benign(0.4) TCGA-ZF-AA51-01 1 54665842 54665842 C G MRPL37 5'UTR 0.41 TCGA-ZF-AA51-01 1 6186675 6186675 G A CHD5 Silent p.I1345I 0.42 TCGA-ZF-AA51-01 1 62677014 62677014 G C L1TD1 Missense_Mutation p.L856F 0.39 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 1 62728770 62728770 C G KANK4 Missense_Mutation p.E845Q 0.25 deleterious(0.01) benign(0.04) TCGA-ZF-AA51-01 1 62728893 62728893 C T KANK4 Missense_Mutation p.E804K 0.24 tolerated(0.17) benign(0.028) TCGA-ZF-AA51-01 1 64680524 64680524 G C UBE2U Missense_Mutation p.E122D 0.25 tolerated(0.06) benign(0.034) TCGA-ZF-AA51-01 1 67147569 67147569 A G SGIP1 Missense_Mutation p.T278A 0.05 tolerated_low_confidence(1) benign(0) TCGA-ZF-AA51-01 1 78959032 78959032 C G PTGFR Missense_Mutation p.L202V 0.12 tolerated(0.98) benign(0.301) TCGA-ZF-AA51-01 1 79116319 79116319 G C IFI44 Missense_Mutation p.E147Q 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-ZF-AA51-01 1 8390433 8390433 C A SLC45A1 Silent p.R294R 0.31 TCGA-ZF-AA51-01 1 85725229 85725229 C T C1orf52 Missense_Mutation p.E30K 0.55 tolerated(0.11) benign(0.128) TCGA-ZF-AA51-01 1 86047730 86047730 C T CYR61 Silent p.L133L 0.10 TCGA-ZF-AA51-01 1 86047753 86047753 C T CYR61 Silent p.L140L 0.11 TCGA-ZF-AA51-01 1 86488240 86488240 G T COL24A1 Missense_Mutation p.P728H 0.28 tolerated(0.55) possibly_damaging(0.549) TCGA-ZF-AA51-01 1 93426968 93426968 G A FAM69A Missense_Mutation p.P7S 0.33 tolerated_low_confidence(0.48) benign(0.003) TCGA-ZF-AA51-01 20 10601965 10601965 G C SLX4IP Missense_Mutation p.E137Q 0.12 tolerated(0.07) benign(0.132) TCGA-ZF-AA51-01 20 10639261 10639261 G T JAG1 Silent p.I183I 0.10 TCGA-ZF-AA51-01 20 13755880 13755880 C G ESF1 Missense_Mutation p.D358H 0.10 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA51-01 20 19665975 19665975 G C SLC24A3 Missense_Mutation p.E432Q 0.15 tolerated(0.41) benign(0.011) TCGA-ZF-AA51-01 20 23345020 23345020 G C GZF1 5'UTR 0.16 TCGA-ZF-AA51-01 20 2591187 2591187 C G TMC2 Silent p.L512L 0.14 TCGA-ZF-AA51-01 20 2776987 2776987 C A CPXM1 Missense_Mutation p.R383L 0.12 tolerated(0.48) benign(0.066) TCGA-ZF-AA51-01 20 31628062 31628062 C A BPIFB6 Missense_Mutation p.F360L 0.10 tolerated(0.66) benign(0.009) TCGA-ZF-AA51-01 20 31814242 31814242 C G BPIFA3 Silent p.L189L 0.31 TCGA-ZF-AA51-01 20 32246632 32246632 G A NECAB3 Silent p.L296L 0.14 TCGA-ZF-AA51-01 20 32268189 32268189 G A E2F1 Nonsense_Mutation p.Q99* 0.30 TCGA-ZF-AA51-01 20 37174949 37174949 G A RALGAPB Silent p.V926V 0.17 TCGA-ZF-AA51-01 20 39813797 39813797 G C ZHX3 3'UTR 0.08 TCGA-ZF-AA51-01 20 44167971 44167971 C G WFDC6 Missense_Mutation p.E26Q 0.22 tolerated(0.08) benign(0.06) TCGA-ZF-AA51-01 20 44512264 44512264 G A ZSWIM1 Missense_Mutation p.E345K 0.25 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA51-01 20 44572019 44572019 C T PCIF1 Missense_Mutation p.L288F 0.07 deleterious(0) probably_damaging(0.984) TCGA-ZF-AA51-01 20 5096165 5096165 C T PCNA Silent p.L212L 0.13 TCGA-ZF-AA51-01 20 56179691 56179691 C G ZBP1 Missense_Mutation p.E410Q 0.35 deleterious(0.02) benign(0.022) TCGA-ZF-AA51-01 20 60861760 60861760 C G OSBPL2 Missense_Mutation p.S373C 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-ZF-AA51-01 21 10933880 10933880 G A TPTE Silent p.I333I 0.20 TCGA-ZF-AA51-01 21 26958010 26958010 A G MRPL39 3'UTR 0.25 TCGA-ZF-AA51-01 21 34003394 34003394 G C SYNJ1 Missense_Mutation p.L1584V 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-ZF-AA51-01 21 34011403 34011403 G C SYNJ1 Missense_Mutation p.Q1283E 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.879) TCGA-ZF-AA51-01 21 38534361 38534361 C T TTC3 Missense_Mutation p.H1056Y 0.08 tolerated(0.08) benign(0.002) TCGA-ZF-AA51-01 21 43529671 43529671 G A UMODL1 Splice_Site p.X507_splice 0.17 TCGA-ZF-AA51-01 21 44441458 44441458 G A PKNOX1 Missense_Mutation p.D256N 0.21 deleterious(0) possibly_damaging(0.612) TCGA-ZF-AA51-01 21 44514877 44514877 C T U2AF1 Missense_Mutation p.E124K 0.16 tolerated(0.08) benign(0.263) TCGA-ZF-AA51-01 21 45681115 45681115 C G DNMT3L Missense_Mutation p.E10Q 0.06 deleterious(0.05) benign(0.08) TCGA-ZF-AA51-01 21 46021666 46021666 C T KRTAP10-7 3'UTR 0.15 TCGA-ZF-AA51-01 22 19839740 19839740 G C C22orf29 Missense_Mutation p.I15M 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-ZF-AA51-01 22 20100205 20100205 C G TRMT2A Missense_Mutation p.E587Q 0.12 tolerated(0.09) benign(0.191) TCGA-ZF-AA51-01 22 21363359 21363359 G C AC002472.1 5'Flank 0.28 TCGA-ZF-AA51-01 22 22317255 22317255 C T TOP3B Silent p.A405A 0.19 TCGA-ZF-AA51-01 22 23495229 23495229 G C RAB36 Missense_Mutation p.K145N 0.14 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA51-01 22 26854487 26854488 - A HPS4 Frame_Shift_Ins p.P591Afs*4 0.09 TCGA-ZF-AA51-01 22 29120968 29120968 T G CHEK2 Missense_Mutation p.K240Q 0.42 deleterious(0.02) possibly_damaging(0.73) TCGA-ZF-AA51-01 22 29533341 29533341 G A KREMEN1 Missense_Mutation p.A215T 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-ZF-AA51-01 22 29669816 29669816 G A EWSR1 Silent p.Q63Q 0.35 TCGA-ZF-AA51-01 22 30064420 30064420 G A NF2 Silent p.E328E 0.38 TCGA-ZF-AA51-01 22 30772606 30772606 G T CCDC157 Nonsense_Mutation p.E711* 0.22 TCGA-ZF-AA51-01 22 31838022 31838022 C T EIF4ENIF1 Silent p.Q763Q 0.14 TCGA-ZF-AA51-01 22 31942884 31942884 G A SFI1 Missense_Mutation p.E126K 0.18 tolerated(0.22) benign(0.015) TCGA-ZF-AA51-01 22 36681372 36681372 C A MYH9 Missense_Mutation p.D1760Y 0.41 possibly_damaging(0.813) TCGA-ZF-AA51-01 22 36872861 36872861 C G TXN2 Missense_Mutation p.K102N 0.12 tolerated(0.05) possibly_damaging(0.569) TCGA-ZF-AA51-01 22 38824093 38824093 C T KCNJ4 Silent p.R15R 0.16 TCGA-ZF-AA51-01 22 39996539 39996539 C T CACNA1I Silent p.F121F 0.25 TCGA-ZF-AA51-01 22 40820226 40820226 G C MKL1 Missense_Mutation p.S154C 0.40 deleterious(0.01) benign(0.319) TCGA-ZF-AA51-01 22 41228587 41228587 C A ST13 Nonsense_Mutation p.E223* 0.11 TCGA-ZF-AA51-01 22 41228614 41228614 C G ST13 Missense_Mutation p.D214H 0.13 deleterious(0) probably_damaging(0.936) TCGA-ZF-AA51-01 22 41568569 41568569 G A EP300 Missense_Mutation p.D1507N 0.25 probably_damaging(1) TCGA-ZF-AA51-01 22 43284697 43284697 G A PACSIN2 Silent p.L187L 0.07 TCGA-ZF-AA51-01 22 45241152 45241152 C G ARHGAP8 Silent p.L322L 0.59 TCGA-ZF-AA51-01 22 46654619 46654619 A T PKDREJ Missense_Mutation p.L1534H 0.15 tolerated(0.37) benign(0) TCGA-ZF-AA51-01 22 50307276 50307276 G A ALG12 Silent p.L46L 0.49 TCGA-ZF-AA51-01 22 50648640 50648640 G A SELO Missense_Mutation p.E324K 0.58 tolerated(0.75) benign(0.019) TCGA-ZF-AA51-01 2 100019149 100019149 C G REV1 Missense_Mutation p.D1167H 0.20 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA51-01 2 101620642 101620642 C A RPL31 Silent p.R44R 0.18 TCGA-ZF-AA51-01 2 108921937 108921937 G C SULT1C2 Missense_Mutation p.D233H 0.41 deleterious(0.01) probably_damaging(0.951) TCGA-ZF-AA51-01 2 112605344 112605344 G T ANAPC1 Nonsense_Mutation p.Y583* 0.29 TCGA-ZF-AA51-01 2 113343940 113343940 G C CHCHD5 Missense_Mutation p.E103Q 0.16 tolerated(0.23) benign(0.004) TCGA-ZF-AA51-01 2 11426712 11426712 C T ROCK2 Missense_Mutation p.D93N 0.18 tolerated(0.07) benign(0.202) TCGA-ZF-AA51-01 2 11798693 11798693 G T NTSR2 Missense_Mutation p.P382H 0.15 tolerated(0.06) benign(0.004) TCGA-ZF-AA51-01 2 118586537 118586537 G A DDX18 Missense_Mutation p.E550K 0.13 deleterious(0.01) benign(0.034) TCGA-ZF-AA51-01 2 119726835 119726835 A C MARCO Missense_Mutation p.Q66P 0.20 deleterious(0.01) benign(0) TCGA-ZF-AA51-01 2 121746705 121746705 C T GLI2 Missense_Mutation p.A1072V 0.18 deleterious(0.02) benign(0.278) TCGA-ZF-AA51-01 2 136261993 136261993 C G ZRANB3 Missense_Mutation p.D23H 0.23 tolerated(0.08) benign(0.002) TCGA-ZF-AA51-01 2 137814238 137814238 G C THSD7B Missense_Mutation p.E130Q 0.35 tolerated(0.13) possibly_damaging(0.504) TCGA-ZF-AA51-01 2 139326743 139326743 C A SPOPL 3'UTR 0.19 TCGA-ZF-AA51-01 2 145147383 145147383 C T ZEB2 Missense_Mutation p.E1094K 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-ZF-AA51-01 2 152496415 152496415 G C NEB Missense_Mutation p.L2949V 0.36 possibly_damaging(0.452) TCGA-ZF-AA51-01 2 160869838 160869838 G A PLA2R1 Nonsense_Mutation p.R534* 0.20 TCGA-ZF-AA51-01 2 163693088 163693088 G C KCNH7 Nonsense_Mutation p.S89* 0.38 TCGA-ZF-AA51-01 2 168101632 168101632 G A XIRP2 Missense_Mutation p.E1244K 0.14 probably_damaging(0.999) TCGA-ZF-AA51-01 2 168106680 168106680 C G XIRP2 Missense_Mutation p.F2926L 0.23 benign(0) TCGA-ZF-AA51-01 2 170366373 170366373 G A KLHL41 Missense_Mutation p.E29K 0.18 tolerated(0.08) possibly_damaging(0.777) TCGA-ZF-AA51-01 2 170502475 170502475 C G CCDC173 Missense_Mutation p.R512T 0.36 deleterious(0.01) possibly_damaging(0.717) TCGA-ZF-AA51-01 2 170502583 170502583 C T CCDC173 Missense_Mutation p.R476K 0.40 tolerated(1) benign(0.01) TCGA-ZF-AA51-01 2 178403003 178403003 C G AGPS 3'UTR 0.33 TCGA-ZF-AA51-01 2 179393141 179393141 G A TTN Missense_Mutation p.S35746L 0.16 TCGA-ZF-AA51-01 2 179464414 179464414 G C TTN Silent p.V18738V 0.40 TCGA-ZF-AA51-01 2 179498774 179498774 T C TTN Missense_Mutation p.Q14151R 0.35 TCGA-ZF-AA51-01 2 179588344 179588344 T A TTN Missense_Mutation p.R7161S 0.14 TCGA-ZF-AA51-01 2 179640102 179640102 G T TTN Missense_Mutation p.H2163Q 0.11 TCGA-ZF-AA51-01 2 182399633 182399633 C G ITGA4 Missense_Mutation p.L992V 0.25 deleterious(0.02) benign(0.437) TCGA-ZF-AA51-01 2 182543225 182543225 T C NEUROD1 Silent p.L121L 0.39 TCGA-ZF-AA51-01 2 187615976 187615976 G C FAM171B Silent p.L280L 0.19 TCGA-ZF-AA51-01 2 189918914 189918914 G C COL5A2 Missense_Mutation p.P806A 0.11 unknown(0) TCGA-ZF-AA51-01 2 190541383 190541383 C T ANKAR Missense_Mutation p.S56F 0.17 tolerated(0.24) benign(0.003) TCGA-ZF-AA51-01 2 190611323 190611323 G A ANKAR Silent p.Q1425Q 0.45 TCGA-ZF-AA51-01 2 192711334 192711334 G C SDPR Silent p.S106S 0.20 TCGA-ZF-AA51-01 2 193044353 193044353 C T TMEFF2 Intron 0.16 TCGA-ZF-AA51-01 2 201437404 201437404 G T SGOL2 Missense_Mutation p.D779Y 0.40 deleterious(0) probably_damaging(0.948) TCGA-ZF-AA51-01 2 202082524 202082524 C A CASP10 3'UTR 0.17 TCGA-ZF-AA51-01 2 207559548 207559548 G C DYTN Missense_Mutation p.S258C 0.12 deleterious(0) probably_damaging(0.983) TCGA-ZF-AA51-01 2 209045482 209045482 G A C2orf80 Missense_Mutation p.S118F 0.26 tolerated(0.06) probably_damaging(0.961) TCGA-ZF-AA51-01 2 215275015 215275015 C T SPAG16 Silent p.D624D 0.17 TCGA-ZF-AA51-01 2 215813826 215813826 G C ABCA12 Missense_Mutation p.F2300L 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 2 215823163 215823163 G C ABCA12 Missense_Mutation p.I1985M 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-ZF-AA51-01 2 216274681 216274681 T G FN1 Missense_Mutation p.T700P 0.20 deleterious(0.01) benign(0.371) TCGA-ZF-AA51-01 2 216279649 216279649 C G FN1 Missense_Mutation p.E618Q 0.19 deleterious(0) benign(0.148) TCGA-ZF-AA51-01 2 219423311 219423311 C A USP37 Missense_Mutation p.W22C 0.20 tolerated(0.05) probably_damaging(0.997) TCGA-ZF-AA51-01 2 220496757 220496757 C T SLC4A3 Silent p.G320G 0.25 TCGA-ZF-AA51-01 2 224462539 224462539 C G SCG2 Missense_Mutation p.E488Q 0.12 deleterious(0.02) possibly_damaging(0.685) TCGA-ZF-AA51-01 2 232378279 232378279 C G LINC00471 RNA 0.09 TCGA-ZF-AA51-01 2 233546331 233546331 G C EFHD1 Missense_Mutation p.E208Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA51-01 2 234669410 234669410 C G UGT1A8 Intron 0.19 TCGA-ZF-AA51-01 2 234775296 234775296 C G MSL3P1 RNA 0.47 TCGA-ZF-AA51-01 2 241831158 241831158 C T C2orf54 Silent p.L179L 0.36 TCGA-ZF-AA51-01 2 242695290 242695290 C G D2HGDH Missense_Mutation p.I389M 0.13 deleterious(0.01) possibly_damaging(0.792) TCGA-ZF-AA51-01 2 27275977 27275977 G A AGBL5 Missense_Mutation p.D51N 0.31 deleterious(0.02) benign(0.052) TCGA-ZF-AA51-01 2 27659664 27659664 G C NRBP1 Missense_Mutation p.E236Q 0.16 tolerated(0.12) probably_damaging(0.99) TCGA-ZF-AA51-01 2 28804960 28804960 C T PLB1 Missense_Mutation p.T531I 0.11 tolerated(0.24) benign(0.034) TCGA-ZF-AA51-01 2 30785065 30785065 G A LCLAT1 Missense_Mutation p.D178N 0.24 deleterious(0) probably_damaging(0.969) TCGA-ZF-AA51-01 2 37032769 37032769 G C VIT Missense_Mutation p.E451Q 0.46 deleterious(0.02) probably_damaging(0.976) TCGA-ZF-AA51-01 2 39249918 39249918 C T SOS1 Missense_Mutation p.E551K 0.42 deleterious(0) possibly_damaging(0.887) TCGA-ZF-AA51-01 2 39250095 39250095 C G SOS1 Missense_Mutation p.E492Q 0.50 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 2 48685295 48685295 C G PPP1R21 Missense_Mutation p.Q102E 0.09 tolerated(1) probably_damaging(0.994) TCGA-ZF-AA51-01 2 53978035 53978035 G C ASB3 Missense_Mutation p.F115L 0.54 tolerated(0.76) benign(0.001) TCGA-ZF-AA51-01 2 55844469 55844469 C T SMEK2 5'UTR 0.33 TCGA-ZF-AA51-01 2 65243799 65243799 C T SLC1A4 Silent p.T342T 0.50 TCGA-ZF-AA51-01 2 65243804 65243804 C G SLC1A4 Missense_Mutation p.S344C 0.52 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 2 65331928 65331928 G C RAB1A Missense_Mutation p.F12L 0.16 deleterious(0.03) benign(0.358) TCGA-ZF-AA51-01 2 71377154 71377154 G C MPHOSPH10 3'UTR 0.10 TCGA-ZF-AA51-01 2 73718610 73718610 C G ALMS1 Missense_Mutation p.P3174R 0.07 probably_damaging(0.994) TCGA-ZF-AA51-01 2 74480183 74480183 C T SLC4A5 Missense_Mutation p.E396K 0.16 deleterious(0.03) probably_damaging(1) TCGA-ZF-AA51-01 2 74492307 74492307 G C SLC4A5 Silent p.L162L 0.14 TCGA-ZF-AA51-01 2 88424061 88424061 G C FABP1 Missense_Mutation p.F95L 0.11 tolerated(0.4) benign(0.001) TCGA-ZF-AA51-01 2 88890561 88890561 G C EIF2AK3 Missense_Mutation p.F259L 0.44 deleterious(0) benign(0.32) TCGA-ZF-AA51-01 2 89160422 89160422 C T IGKJ4 Missense_Mutation p.G5R 0.52 possibly_damaging(0.573) TCGA-ZF-AA51-01 2 89544435 89544435 C T IGKV2-30 Silent p.Q63Q 0.09 TCGA-ZF-AA51-01 2 90259814 90259814 T A IGKV1D-8 Missense_Mutation p.L14Q 0.09 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA51-01 2 9580774 9580774 C G CPSF3 Missense_Mutation p.F305L 0.22 deleterious(0) probably_damaging(0.971) TCGA-ZF-AA51-01 2 97019974 97019974 C T NCAPH Silent p.I352I 0.11 TCGA-ZF-AA51-01 2 97464824 97464824 C G CNNM4 Nonsense_Mutation p.S571* 0.08 TCGA-ZF-AA51-01 2 99439386 99439386 C T KIAA1211L Silent p.E450E 0.29 TCGA-ZF-AA51-01 3 100013994 100013994 C T TBC1D23 Silent p.L222L 0.40 TCGA-ZF-AA51-01 3 105400520 105400520 C G CBLB Intron 0.25 TCGA-ZF-AA51-01 3 113218358 113218358 C G SPICE1 Missense_Mutation p.L73F 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 3 119135096 119135096 G A ARHGAP31 Silent p.G1440G 0.12 TCGA-ZF-AA51-01 3 121155015 121155015 G A POLQ Silent p.F2499F 0.23 TCGA-ZF-AA51-01 3 123021988 123021988 G A ADCY5 Missense_Mutation p.H880Y 0.31 tolerated(0.86) benign(0.01) TCGA-ZF-AA51-01 3 124390626 124390626 G A KALRN Missense_Mutation p.E366K 0.21 tolerated(0.43) benign(0.011) TCGA-ZF-AA51-01 3 126218907 126218907 C G UROC1 Missense_Mutation p.Q472H 0.30 tolerated(0.44) benign(0.18) TCGA-ZF-AA51-01 3 126218960 126218960 C G UROC1 Missense_Mutation p.E455Q 0.19 tolerated(0.5) benign(0.02) TCGA-ZF-AA51-01 3 126708422 126708422 G A PLXNA1 Missense_Mutation p.G329D 0.22 deleterious(0.04) probably_damaging(0.943) TCGA-ZF-AA51-01 3 126735363 126735363 G A PLXNA1 Silent p.R1006R 0.12 TCGA-ZF-AA51-01 3 126916019 126916019 C T C3orf56 Missense_Mutation p.S164L 0.28 tolerated(0.11) possibly_damaging(0.504) TCGA-ZF-AA51-01 3 130289661 130289661 G A COL6A6 Splice_Site p.X801_splice 0.12 TCGA-ZF-AA51-01 3 135869860 135869860 T C MSL2 3'UTR 0.11 TCGA-ZF-AA51-01 3 136002774 136002774 C T PCCB Silent p.F233F 0.14 TCGA-ZF-AA51-01 3 14223150 14223150 G A LSM3 Missense_Mutation p.E38K 0.17 deleterious(0.01) possibly_damaging(0.777) TCGA-ZF-AA51-01 3 142297558 142297558 G C ATR 5'UTR 0.24 TCGA-ZF-AA51-01 3 149220466 149220466 G C TM4SF4 Missense_Mutation p.D199H 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-AA51-01 3 149684286 149684286 G C PFN2 Missense_Mutation p.S138C 0.15 deleterious(0.01) benign(0.394) TCGA-ZF-AA51-01 3 151056546 151056546 G C P2RY12 Missense_Mutation p.L30V 0.17 tolerated(1) benign(0.003) TCGA-ZF-AA51-01 3 151154611 151154611 C T IGSF10 Missense_Mutation p.G2580R 0.22 tolerated(0.17) benign(0.12) TCGA-ZF-AA51-01 3 153840609 153840609 C G ARHGEF26 Silent p.L276L 0.19 TCGA-ZF-AA51-01 3 159614545 159614545 G A IQCJ-SCHIP1 Silent p.E558E 0.19 TCGA-ZF-AA51-01 3 164906398 164906398 C T SLITRK3 Missense_Mutation p.E741K 0.21 deleterious(0.03) benign(0.01) TCGA-ZF-AA51-01 3 167189390 167189390 T G SERPINI2 Missense_Mutation p.Q78P 0.19 tolerated(0.08) probably_damaging(0.951) TCGA-ZF-AA51-01 3 169999005 169999005 C T PRKCI Missense_Mutation p.H312Y 0.19 tolerated(0.18) possibly_damaging(0.656) TCGA-ZF-AA51-01 3 169999030 169999030 C G PRKCI Missense_Mutation p.S320C 0.23 tolerated(0.08) probably_damaging(1) TCGA-ZF-AA51-01 3 172062049 172062049 G A FNDC3B Splice_Site p.X750_splice 0.18 TCGA-ZF-AA51-01 3 172096176 172096176 C T FNDC3B Missense_Mutation p.S1042L 0.09 deleterious(0) probably_damaging(0.976) TCGA-ZF-AA51-01 3 17279814 17279814 T A TBC1D5 Missense_Mutation p.S477C 0.25 deleterious(0.02) benign(0.443) TCGA-ZF-AA51-01 3 179046084 179046084 G C ZNF639 Translation_Start_Site p.M1? 0.59 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-ZF-AA51-01 3 183696419 183696419 G A ABCC5 Missense_Mutation p.R390W 0.25 deleterious(0) possibly_damaging(0.773) TCGA-ZF-AA51-01 3 186508143 186508143 G C RFC4 Missense_Mutation p.S285C 0.35 deleterious(0.01) probably_damaging(0.967) TCGA-ZF-AA51-01 3 186760673 186760673 A T ST6GAL1 Missense_Mutation p.Q61L 0.15 benign(0) TCGA-ZF-AA51-01 3 190326925 190326925 T C IL1RAP Silent p.D164D 0.31 TCGA-ZF-AA51-01 3 195516459 195516459 G A MUC4 Silent p.V664V 0.53 TCGA-ZF-AA51-01 3 195965721 195965721 G A PCYT1A Silent p.I314I 0.25 TCGA-ZF-AA51-01 3 196198865 196198865 G C RNF168 Nonsense_Mutation p.S514* 0.44 TCGA-ZF-AA51-01 3 196666133 196666133 G C NCBP2 Missense_Mutation p.F83L 0.12 deleterious(0) possibly_damaging(0.869) TCGA-ZF-AA51-01 3 197401383 197401383 C G KIAA0226 3'Flank 0.08 TCGA-ZF-AA51-01 3 33087665 33087665 C T GLB1 Missense_Mutation p.E339K 0.27 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 3 38739575 38739575 G A SCN10A Silent p.I1712I 0.26 TCGA-ZF-AA51-01 3 38765020 38765020 C A SCN10A Nonsense_Mutation p.E1085* 0.18 TCGA-ZF-AA51-01 3 39453526 39453526 C T RPSA Missense_Mutation p.S256F 0.26 deleterious(0.02) benign(0.27) TCGA-ZF-AA51-01 3 40464485 40464485 G C ENTPD3 Missense_Mutation p.E326Q 0.27 tolerated(0.57) benign(0.285) TCGA-ZF-AA51-01 3 45500348 45500348 A G LARS2 Silent p.Q240Q 0.06 TCGA-ZF-AA51-01 3 45637258 45637258 C T LIMD1 Missense_Mutation p.S296F 0.21 tolerated(0.06) benign(0.166) TCGA-ZF-AA51-01 3 45812725 45812725 C T SLC6A20 Missense_Mutation p.E307K 0.44 tolerated(0.12) possibly_damaging(0.895) TCGA-ZF-AA51-01 3 48361094 48361094 C G SPINK8 Missense_Mutation p.K44N 0.28 tolerated(0.13) benign(0.026) TCGA-ZF-AA51-01 3 49720826 49720826 G A APEH 3'UTR 0.14 TCGA-ZF-AA51-01 3 49723877 49723877 G A MST1 Silent p.V295V 0.26 TCGA-ZF-AA51-01 3 53220213 53220213 G C PRKCD Missense_Mutation p.E373Q 0.35 tolerated(0.65) benign(0.007) TCGA-ZF-AA51-01 3 53220312 53220312 G A PRKCD Missense_Mutation p.E406K 0.35 tolerated(0.58) benign(0.343) TCGA-ZF-AA51-01 3 53275178 53275178 G A TKT Silent p.I103I 0.38 TCGA-ZF-AA51-01 3 58487085 58487085 C G KCTD6 Missense_Mutation p.T147S 0.10 tolerated(0.68) benign(0.021) TCGA-ZF-AA51-01 3 62384993 62384993 C A CADPS 3'UTR 0.24 TCGA-ZF-AA51-01 3 77651412 77651412 C T ROBO2 Missense_Mutation p.S985L 0.09 deleterious(0) benign(0.307) TCGA-ZF-AA51-01 3 8787493 8787493 C G CAV3 Silent p.L132L 0.26 TCGA-ZF-AA51-01 4 100242524 100242524 G A ADH1B 5'UTR 0.16 TCGA-ZF-AA51-01 4 107168423 107168423 C T TBCK Missense_Mutation p.M268I 0.16 tolerated(0.08) benign(0.004) TCGA-ZF-AA51-01 4 108969778 108969778 C A LEF1 3'UTR 0.31 TCGA-ZF-AA51-01 4 114276415 114276415 C T ANK2 Missense_Mutation p.P2214L 0.20 probably_damaging(1) TCGA-ZF-AA51-01 4 126401010 126401010 C A FAT4 Nonsense_Mutation p.Y4196* 0.27 TCGA-ZF-AA51-01 4 13602772 13602772 C G BOD1L1 Missense_Mutation p.E1918Q 0.59 probably_damaging(0.914) TCGA-ZF-AA51-01 4 13606519 13606519 C T BOD1L1 Missense_Mutation p.E669K 0.15 possibly_damaging(0.851) TCGA-ZF-AA51-01 4 140187920 140187920 C G MGARP Missense_Mutation p.E186Q 0.20 tolerated(0.14) probably_damaging(0.955) TCGA-ZF-AA51-01 4 147363880 147363880 A G SLC10A7 Intron 0.13 TCGA-ZF-AA51-01 4 15707257 15707257 G A BST1 Missense_Mutation p.R103K 0.56 tolerated(0.94) benign(0.02) TCGA-ZF-AA51-01 4 157891978 157891978 C T PDGFC Silent p.L26L 0.24 TCGA-ZF-AA51-01 4 166405672 166405672 C T CPE Missense_Mutation p.R297W 0.48 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 4 166418725 166418725 A T CPE Missense_Mutation p.E465V 0.17 deleterious(0.01) unknown(0) TCGA-ZF-AA51-01 4 184577047 184577047 G C RWDD4 Missense_Mutation p.S31C 0.20 tolerated(0.13) benign(0.038) TCGA-ZF-AA51-01 4 187159490 187159490 C T KLKB1 Missense_Mutation p.S190L 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 4 2306843 2306843 C A ZFYVE28 Silent p.G408G 0.31 TCGA-ZF-AA51-01 4 2659602 2659602 G A FAM193A Missense_Mutation p.E171K 0.10 deleterious(0.01) benign(0.107) TCGA-ZF-AA51-01 4 31144170 31144170 C A PCDH7 Missense_Mutation p.S1156Y 0.22 deleterious(0) possibly_damaging(0.875) TCGA-ZF-AA51-01 4 38097678 38097678 G C TBC1D1 Missense_Mutation p.D789H 0.20 deleterious(0) possibly_damaging(0.902) TCGA-ZF-AA51-01 4 38776398 38776398 C G TLR10 Missense_Mutation p.E272Q 0.20 tolerated(0.09) benign(0.049) TCGA-ZF-AA51-01 4 39471699 39471699 G C LIAS Missense_Mutation p.K266N 0.27 deleterious(0) probably_damaging(0.945) TCGA-ZF-AA51-01 4 47676441 47676441 G A CORIN Silent p.L442L 0.45 TCGA-ZF-AA51-01 4 5332959 5332959 G A STK32B Silent p.Q91Q 0.26 TCGA-ZF-AA51-01 4 53476749 53476749 G A USP46 Missense_Mutation p.S199F 0.11 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA51-01 4 55141105 55141105 C G PDGFRA Nonsense_Mutation p.S584* 0.47 TCGA-ZF-AA51-01 4 5664925 5664925 C T EVC2 Missense_Mutation p.D352N 0.29 tolerated(0.09) benign(0.046) TCGA-ZF-AA51-01 4 5844873 5844873 G A CRMP1 Silent p.L327L 0.24 TCGA-ZF-AA51-01 4 66201676 66201676 C T EPHA5 Silent p.L942L 0.11 TCGA-ZF-AA51-01 4 6862709 6862709 C G KIAA0232 Silent p.V200V 0.16 TCGA-ZF-AA51-01 4 70615496 70615496 C T SULT1B1 Silent p.V106V 0.26 TCGA-ZF-AA51-01 4 71522974 71522974 G A IGJ Missense_Mutation p.P75S 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 4 76926031 76926031 A T CXCL9 Missense_Mutation p.N69K 0.16 tolerated(0.07) probably_damaging(0.978) TCGA-ZF-AA51-01 4 84374572 84374572 C T HELQ Missense_Mutation p.G275E 0.36 tolerated(0.13) benign(0.02) TCGA-ZF-AA51-01 4 87028452 87028452 C A MAPK10 Missense_Mutation p.R97I 0.41 deleterious(0) probably_damaging(0.964) TCGA-ZF-AA51-01 4 89599246 89599246 G C HERC3 Silent p.L719L 0.23 TCGA-ZF-AA51-01 4 90816441 90816441 G A MMRN1 Missense_Mutation p.E107K 0.11 tolerated_low_confidence(0.22) benign(0.017) TCGA-ZF-AA51-01 4 96171718 96171718 G C UNC5C Missense_Mutation p.S232C 0.38 deleterious(0) probably_damaging(0.989) TCGA-ZF-AA51-01 5 101631717 101631717 C G SLCO4C1 Missense_Mutation p.E84Q 0.42 tolerated(0.17) benign(0.134) TCGA-ZF-AA51-01 5 107197374 107197374 C T FBXL17 3'UTR 0.32 TCGA-ZF-AA51-01 5 108691666 108691666 G C PJA2 Missense_Mutation p.Q572E 0.32 tolerated(0.12) probably_damaging(0.94) TCGA-ZF-AA51-01 5 132335832 132335832 C G ZCCHC10 Missense_Mutation p.K79N 0.31 deleterious(0.02) possibly_damaging(0.607) TCGA-ZF-AA51-01 5 135290515 135290515 G C LECT2 Missense_Mutation p.S3C 0.16 tolerated(0.06) benign(0.41) TCGA-ZF-AA51-01 5 13866331 13866331 G A DNAH5 Nonsense_Mutation p.Q1372* 0.09 TCGA-ZF-AA51-01 5 140175795 140175795 G T PCDHA2 Nonsense_Mutation p.E416* 0.27 TCGA-ZF-AA51-01 5 140554439 140554439 G C PCDHB7 Missense_Mutation p.E675Q 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-ZF-AA51-01 5 140580018 140580018 G C PCDHB11 Missense_Mutation p.G224A 0.39 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-ZF-AA51-01 5 140590576 140590576 G A PCDHB12 Silent p.S699S 0.27 TCGA-ZF-AA51-01 5 140698943 140698943 G C TAF7 Missense_Mutation p.F223L 0.47 tolerated(0.11) probably_damaging(0.997) TCGA-ZF-AA51-01 5 154396459 154396459 C G KIF4B Missense_Mutation p.P1014A 0.43 tolerated(0.07) benign(0.142) TCGA-ZF-AA51-01 5 156593038 156593038 C G FAM71B Missense_Mutation p.E48Q 0.48 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 5 167643840 167643840 G C TENM2 Missense_Mutation p.Q1382H 0.29 tolerated(0.08) benign(0.038) TCGA-ZF-AA51-01 5 176023997 176023997 C G GPRIN1 Missense_Mutation p.E947Q 0.26 deleterious(0.01) probably_damaging(0.932) TCGA-ZF-AA51-01 5 177309462 177309462 C G RP11-423H2.1 RNA 0.23 TCGA-ZF-AA51-01 5 24488161 24488161 C T CDH10 Missense_Mutation p.E660K 0.16 deleterious(0) probably_damaging(0.973) TCGA-ZF-AA51-01 5 32783018 32783018 G A NPR3 Missense_Mutation p.G437E 0.16 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA51-01 5 33577065 33577065 G T ADAMTS12 Silent p.V1022V 0.07 TCGA-ZF-AA51-01 5 33751629 33751629 C T ADAMTS12 Missense_Mutation p.G172R 0.25 tolerated(0.05) probably_damaging(1) TCGA-ZF-AA51-01 5 38338854 38338854 G A EGFLAM Missense_Mutation p.V88M 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-ZF-AA51-01 5 41382448 41382448 G A PLCXD3 Nonsense_Mutation p.R98* 0.26 TCGA-ZF-AA51-01 5 428077 428077 G C AHRR Silent p.L310L 0.29 TCGA-ZF-AA51-01 5 45262889 45262889 G T HCN1 Missense_Mutation p.Q603K 0.15 tolerated(0.09) benign(0.281) TCGA-ZF-AA51-01 5 61688797 61688797 C T DIMT1 Silent p.R228R 0.16 TCGA-ZF-AA51-01 5 65455156 65455156 G C SREK1 Missense_Mutation p.L135F 0.16 deleterious(0.02) probably_damaging(0.921) TCGA-ZF-AA51-01 5 75950813 75950813 G C IQGAP2 Missense_Mutation p.D769H 0.16 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA51-01 5 76259175 76259175 C T CRHBP Missense_Mutation p.S234L 0.20 tolerated(0.34) benign(0.309) TCGA-ZF-AA51-01 5 79372747 79372747 C A THBS4 Silent p.T654T 0.42 TCGA-ZF-AA51-01 5 90074321 90074321 G C GPR98 Silent p.L4248L 0.45 TCGA-ZF-AA51-01 5 94206145 94206145 C G MCTP1 Missense_Mutation p.E765Q 0.34 deleterious(0.04) probably_damaging(0.954) TCGA-ZF-AA51-01 5 94208915 94208915 C G MCTP1 Silent p.L655L 0.35 TCGA-ZF-AA51-01 6 100057121 100057121 C G PRDM13 Missense_Mutation p.S112C 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-AA51-01 6 101315833 101315833 G A ASCC3 Missense_Mutation p.S14L 0.12 tolerated(0.06) possibly_damaging(0.816) TCGA-ZF-AA51-01 6 108372309 108372309 C A OSTM1 Nonsense_Mutation p.E237* 0.22 TCGA-ZF-AA51-01 6 109769440 109769440 G T MICAL1 Missense_Mutation p.F607L 0.28 deleterious(0.05) possibly_damaging(0.762) TCGA-ZF-AA51-01 6 109770638 109770638 T C MICAL1 Missense_Mutation p.N494S 0.29 tolerated(0.66) benign(0.012) TCGA-ZF-AA51-01 6 12130067 12130067 G C HIVEP1 Missense_Mutation p.D2051H 0.15 deleterious(0) possibly_damaging(0.593) TCGA-ZF-AA51-01 6 125231651 125231651 G C RP11-510H23.1 RNA 0.20 TCGA-ZF-AA51-01 6 131277156 131277156 G T EPB41L2 Nonsense_Mutation p.S157* 0.23 TCGA-ZF-AA51-01 6 1313480 1313480 C G FOXQ1 Missense_Mutation p.L181V 0.20 deleterious(0.04) probably_damaging(0.958) TCGA-ZF-AA51-01 6 132644006 132644006 G C MOXD1 Missense_Mutation p.L373V 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 6 133072427 133072427 C T VNN2 Missense_Mutation p.E353K 0.22 tolerated(0.63) benign(0.007) TCGA-ZF-AA51-01 6 142741106 142741106 G A GPR126 Missense_Mutation p.E1062K 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-ZF-AA51-01 6 150322104 150322104 C G RAET1K RNA 0.30 TCGA-ZF-AA51-01 6 152782775 152782775 T A SYNE1 Missense_Mutation p.E784V 0.24 benign(0.032) TCGA-ZF-AA51-01 6 157505389 157505389 G A ARID1B Missense_Mutation p.E1124K 0.44 probably_damaging(0.995) TCGA-ZF-AA51-01 6 159006376 159006376 C T TMEM181 Silent p.V237V 0.26 TCGA-ZF-AA51-01 6 160222187 160222187 G C PNLDC1 Missense_Mutation p.Q48H 0.14 deleterious(0.05) benign(0.049) TCGA-ZF-AA51-01 6 160506147 160506147 G C IGF2R Missense_Mutation p.Q2063H 0.24 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 6 16327614 16327614 C T ATXN1 Missense_Mutation p.E310K 0.14 deleterious(0.02) possibly_damaging(0.601) TCGA-ZF-AA51-01 6 163984678 163984680 CTA - QKI In_Frame_Del p.Y288del 0.22 TCGA-ZF-AA51-01 6 167570935 167570935 G A GPR31 Nonsense_Mutation p.Q129* 0.39 TCGA-ZF-AA51-01 6 167704942 167704942 C T UNC93A 5'UTR 0.34 TCGA-ZF-AA51-01 6 24409759 24409759 G C MRS2 Missense_Mutation p.M124I 0.40 tolerated(0.15) benign(0.288) TCGA-ZF-AA51-01 6 26123970 26123970 T C HIST1H2BC Missense_Mutation p.I55V 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.529) TCGA-ZF-AA51-01 6 26448630 26448630 G A BTN3A3 Missense_Mutation p.M290I 0.40 tolerated(0.29) benign(0.008) TCGA-ZF-AA51-01 6 27833414 27833414 C T HIST1H2AL Silent p.L94L 0.08 TCGA-ZF-AA51-01 6 27840978 27840978 C G HIST1H4L Nonstop_Mutation p.*104Sext*? 0.31 TCGA-ZF-AA51-01 6 28214835 28214835 G C ZKSCAN4 Silent p.L230L 0.45 TCGA-ZF-AA51-01 6 28543861 28543861 G A SCAND3 Silent p.L207L 0.45 TCGA-ZF-AA51-01 6 29589917 29589917 G A GABBR1 Silent p.F343F 0.35 TCGA-ZF-AA51-01 6 30863264 30863264 G A DDR1 Missense_Mutation p.A533T 0.24 tolerated(0.47) benign(0.119) TCGA-ZF-AA51-01 6 34840212 34840212 C G UHRF1BP1 Silent p.L1440L 0.11 TCGA-ZF-AA51-01 6 37623624 37623624 C T MDGA1 Missense_Mutation p.R144Q 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-ZF-AA51-01 6 39325103 39325103 G C KIF6 Silent p.L710L 0.18 TCGA-ZF-AA51-01 6 42932024 42932024 C T PEX6 3'UTR 0.27 TCGA-ZF-AA51-01 6 43488737 43488737 G C POLR1C Missense_Mutation p.E291D 0.23 tolerated(0.86) benign(0.009) TCGA-ZF-AA51-01 6 43745253 43745253 G A VEGFA Missense_Mutation p.E236K 0.15 deleterious(0.01) probably_damaging(0.973) TCGA-ZF-AA51-01 6 46801206 46801206 G A MEP1A Missense_Mutation p.E514K 0.15 deleterious(0.02) possibly_damaging(0.601) TCGA-ZF-AA51-01 6 52884028 52884028 C G ICK Missense_Mutation p.R163T 0.19 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 6 553871 553871 C G EXOC2 Missense_Mutation p.D702H 0.09 tolerated(0.1) possibly_damaging(0.455) TCGA-ZF-AA51-01 6 56880015 56880015 C G BEND6 Missense_Mutation p.S128C 0.15 deleterious_low_confidence(0.04) benign(0.134) TCGA-ZF-AA51-01 6 73000551 73000551 C A RIMS1 Missense_Mutation p.P1242T 0.14 deleterious(0.04) possibly_damaging(0.711) TCGA-ZF-AA51-01 6 83847184 83847184 G A DOPEY1 Silent p.K1141K 0.38 TCGA-ZF-AA51-01 6 84233807 84233807 G C PRSS35 Missense_Mutation p.R216T 0.14 tolerated(0.55) benign(0.002) TCGA-ZF-AA51-01 6 84233890 84233890 G A PRSS35 Missense_Mutation p.E244K 0.15 tolerated(0.43) benign(0.054) TCGA-ZF-AA51-01 6 91226369 91226369 C T MAP3K7 Missense_Mutation p.E558K 0.19 tolerated(0.19) benign(0.213) TCGA-ZF-AA51-01 6 97247334 97247334 G C GPR63 Missense_Mutation p.L92V 0.12 tolerated(0.19) benign(0.005) TCGA-ZF-AA51-01 7 100361433 100361433 C T ZAN Nonsense_Mutation p.Q1331* 0.45 TCGA-ZF-AA51-01 7 100683527 100683527 G C MUC17 Missense_Mutation p.E2944Q 0.18 probably_damaging(0.993) TCGA-ZF-AA51-01 7 103202034 103202035 - T RELN Frame_Shift_Ins p.R1825Kfs*7 0.27 TCGA-ZF-AA51-01 7 106871137 106871137 C G COG5 Splice_Site p.X729_splice 0.38 TCGA-ZF-AA51-01 7 107564714 107564714 G C LAMB1 Missense_Mutation p.L1729V 0.30 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA51-01 7 117420596 117420596 C G CTTNBP2 Missense_Mutation p.D808H 0.15 tolerated(0.1) possibly_damaging(0.841) TCGA-ZF-AA51-01 7 128588054 128588054 C T IRF5 Silent p.I353I 0.09 TCGA-ZF-AA51-01 7 129519417 129519417 G T UBE2H Missense_Mutation p.P66T 0.16 deleterious(0) probably_damaging(0.985) TCGA-ZF-AA51-01 7 131844337 131844337 T C PLXNA4 Missense_Mutation p.I1519V 0.20 tolerated(1) benign(0.007) TCGA-ZF-AA51-01 7 138768692 138768692 G A ZC3HAV1 Silent p.F177F 0.19 TCGA-ZF-AA51-01 7 140449173 140449173 G A BRAF Nonsense_Mutation p.Q636* 0.27 TCGA-ZF-AA51-01 7 142562357 142562357 G C EPHB6 Missense_Mutation p.E267Q 0.16 deleterious(0.04) benign(0.027) TCGA-ZF-AA51-01 7 142658935 142658935 C G KEL Missense_Mutation p.E10Q 0.19 deleterious_low_confidence(0.01) benign(0.205) TCGA-ZF-AA51-01 7 142881081 142881081 C T TAS2R39 Silent p.I190I 0.25 TCGA-ZF-AA51-01 7 149481978 149481978 C G SSPO Intron 0.33 TCGA-ZF-AA51-01 7 149509070 149509070 C T SSPO RNA 0.19 TCGA-ZF-AA51-01 7 150921105 150921105 C T ABCF2 Missense_Mutation p.D155N 0.28 tolerated(0.07) benign(0.011) TCGA-ZF-AA51-01 7 151948040 151948040 C T KMT2C Missense_Mutation p.E545K 0.15 benign(0.317) TCGA-ZF-AA51-01 7 19184457 19184457 G A FERD3L 3'UTR 0.18 TCGA-ZF-AA51-01 7 23381743 23381743 C T IGF2BP3 Silent p.G381G 0.14 TCGA-ZF-AA51-01 7 24932039 24932039 G C OSBPL3 Nonsense_Mutation p.S18* 0.18 TCGA-ZF-AA51-01 7 26217662 26217662 C T NFE2L3 Nonsense_Mutation p.Q224* 0.33 TCGA-ZF-AA51-01 7 27213894 27213894 G A HOXA10 Missense_Mutation p.S11L 0.38 tolerated(0.11) possibly_damaging(0.629) TCGA-ZF-AA51-01 7 29440302 29440302 C G CHN2 Nonsense_Mutation p.S145* 0.14 TCGA-ZF-AA51-01 7 30951862 30951862 C G AQP1 Nonsense_Mutation p.S113* 0.38 TCGA-ZF-AA51-01 7 31918760 31918760 C T PDE1C Missense_Mutation p.D152N 0.12 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA51-01 7 32110084 32110084 G C PDE1C Intron 0.40 TCGA-ZF-AA51-01 7 34006100 34006100 A G BMPER Missense_Mutation p.Y110C 0.12 tolerated(0.06) possibly_damaging(0.471) TCGA-ZF-AA51-01 7 38457532 38457532 G A AMPH Missense_Mutation p.P431S 0.21 tolerated(0.31) benign(0.075) TCGA-ZF-AA51-01 7 44105092 44105092 C T PGAM2 Missense_Mutation p.E13K 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-AA51-01 7 45009674 45009674 C G MYO1G Missense_Mutation p.E433Q 0.25 deleterious(0.04) benign(0.099) TCGA-ZF-AA51-01 7 45009687 45009687 C T MYO1G Silent p.L428L 0.19 TCGA-ZF-AA51-01 7 47898429 47898429 G C PKD1L1 Missense_Mutation p.Q1402E 0.14 tolerated(0.23) benign(0.085) TCGA-ZF-AA51-01 7 5104216 5104216 G A RBAK Missense_Mutation p.E377K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA51-01 7 5336660 5336660 C T SLC29A4 Missense_Mutation p.S238L 0.11 deleterious(0) possibly_damaging(0.788) TCGA-ZF-AA51-01 7 5410927 5410927 G A TNRC18 Nonsense_Mutation p.Q1100* 0.50 TCGA-ZF-AA51-01 7 64167368 64167368 C T ZNF107 Missense_Mutation p.S229L 0.25 deleterious(0.01) possibly_damaging(0.887) TCGA-ZF-AA51-01 7 64167872 64167872 C G ZNF107 Nonsense_Mutation p.S397* 0.17 TCGA-ZF-AA51-01 7 6797423 6797423 G C RSPH10B2 Missense_Mutation p.E39Q 0.14 tolerated(0.12) benign(0.381) TCGA-ZF-AA51-01 7 72412747 72412747 G C POM121 Missense_Mutation p.E474Q 0.18 tolerated(0.06) benign(0.249) TCGA-ZF-AA51-01 7 74160747 74160747 G C GTF2I Missense_Mutation p.E689Q 0.19 deleterious(0) possibly_damaging(0.556) TCGA-ZF-AA51-01 7 8196838 8196838 G T ICA1 Missense_Mutation p.L238M 0.48 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA51-01 7 87759715 87759715 C T ADAM22 Missense_Mutation p.R256W 0.13 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 7 87762245 87762245 G A ADAM22 Silent p.L352L 0.17 TCGA-ZF-AA51-01 7 91660846 91660846 G A AKAP9 Silent p.V1422V 0.14 TCGA-ZF-AA51-01 7 91706275 91706275 C G AKAP9 Missense_Mutation p.S2240C 0.36 probably_damaging(0.969) TCGA-ZF-AA51-01 7 92731256 92731256 C A SAMD9 Missense_Mutation p.K1385N 0.47 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 7 92905687 92905687 G T CCDC132 Intron 0.28 TCGA-ZF-AA51-01 7 92983073 92983073 G A CCDC132 Missense_Mutation p.G862E 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 7 94057055 94057055 C G COL1A2 Silent p.L1128L 0.18 TCGA-ZF-AA51-01 7 97784176 97784176 G A LMTK2 Missense_Mutation p.G186E 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 7 98633248 98633248 C T SMURF1 Missense_Mutation p.R660Q 0.19 tolerated(0.87) benign(0.003) TCGA-ZF-AA51-01 7 99013881 99013881 G A BUD31 Missense_Mutation p.R72K 0.20 tolerated(0.94) benign(0.075) TCGA-ZF-AA51-01 7 99057805 99057805 C T PTCD1 Missense_Mutation p.D9N 0.18 deleterious_low_confidence(0.01) benign(0.333) TCGA-ZF-AA51-01 7 99312292 99312292 G T CYP3A7 Missense_Mutation p.F228L 0.25 deleterious(0.05) benign(0.213) TCGA-ZF-AA51-01 7 99662558 99662558 G C ZSCAN21 3'UTR 0.16 TCGA-ZF-AA51-01 7 99704427 99704427 C T AP4M1 Silent p.F428F 0.27 TCGA-ZF-AA51-01 8 101601189 101601189 C T SNX31 Missense_Mutation p.D333N 0.45 tolerated(0.23) possibly_damaging(0.572) TCGA-ZF-AA51-01 8 101608876 101608876 G A SNX31 Silent p.V323V 0.35 TCGA-ZF-AA51-01 8 101608942 101608942 G T SNX31 Silent p.I301I 0.47 TCGA-ZF-AA51-01 8 105360810 105360810 C G DCSTAMP Missense_Mutation p.I10M 0.15 deleterious_low_confidence(0.01) benign(0.316) TCGA-ZF-AA51-01 8 110476838 110476838 G A PKHD1L1 Missense_Mutation p.D2593N 0.21 tolerated(0.07) probably_damaging(0.987) TCGA-ZF-AA51-01 8 113275983 113275983 G A CSMD3 Silent p.F3249F 0.21 TCGA-ZF-AA51-01 8 117862989 117862989 C T RAD21 Silent p.Q496Q 0.09 TCGA-ZF-AA51-01 8 121457459 121457459 C G MRPL13 5'UTR 0.12 TCGA-ZF-AA51-01 8 125463496 125463496 G C TRMT12 Missense_Mutation p.E110Q 0.39 tolerated(0.26) benign(0.015) TCGA-ZF-AA51-01 8 144803408 144803408 T C MAPK15 Missense_Mutation p.L344P 0.18 deleterious(0.01) benign(0.132) TCGA-ZF-AA51-01 8 144919309 144919309 G A NRBP2 Nonsense_Mutation p.R389* 0.41 TCGA-ZF-AA51-01 8 145582986 145582986 G A SLC52A2 Silent p.L11L 0.30 TCGA-ZF-AA51-01 8 145584046 145584046 G C SLC52A2 Missense_Mutation p.Q298H 0.17 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 8 145666128 145666128 C G TONSL Silent p.L379L 0.24 TCGA-ZF-AA51-01 8 145724372 145724372 G C PPP1R16A Missense_Mutation p.S135T 0.20 deleterious(0.03) probably_damaging(0.991) TCGA-ZF-AA51-01 8 146107175 146107175 C T ZNF250 Missense_Mutation p.E470K 0.12 tolerated(0.07) benign(0.422) TCGA-ZF-AA51-01 8 21766771 21766771 G A DOK2 3'UTR 0.15 TCGA-ZF-AA51-01 8 25323728 25323728 G T CDCA2 Missense_Mutation p.R142I 0.23 deleterious(0) probably_damaging(0.957) TCGA-ZF-AA51-01 8 36788510 36788510 G T KCNU1 Silent p.L926L 0.17 TCGA-ZF-AA51-01 8 38133860 38133860 G C WHSC1L1 Silent p.P1342P 0.05 TCGA-ZF-AA51-01 8 39486947 39486947 G C ADAM18 Missense_Mutation p.E193Q 0.08 deleterious(0.03) possibly_damaging(0.685) TCGA-ZF-AA51-01 8 39521407 39521407 G C ADAM18 Missense_Mutation p.E442Q 0.11 tolerated(0.48) benign(0.21) TCGA-ZF-AA51-01 8 41800466 41800466 G A KAT6A Nonsense_Mutation p.Q761* 0.04 TCGA-ZF-AA51-01 8 42407786 42407786 C G SMIM19 3'UTR 0.36 TCGA-ZF-AA51-01 8 49832453 49832453 A T SNAI2 Splice_Site p.X209_splice 0.35 TCGA-ZF-AA51-01 8 55538163 55538163 C G RP1 Nonsense_Mutation p.S574* 0.12 TCGA-ZF-AA51-01 8 56015028 56015028 C G XKR4 5'UTR 0.29 TCGA-ZF-AA51-01 8 74204023 74204023 G A RPL7 Missense_Mutation p.P138L 0.17 deleterious(0.02) benign(0.42) TCGA-ZF-AA51-01 8 75926323 75926323 C T CRISPLD1 Silent p.C204C 0.23 TCGA-ZF-AA51-01 8 97620648 97620648 A G SDC2 Missense_Mutation p.Y131C 0.24 tolerated(0.13) possibly_damaging(0.794) TCGA-ZF-AA51-01 8 99718791 99718791 T A STK3 Silent p.I224I 0.30 TCGA-ZF-AA51-01 9 104303103 104303103 C T RNF20 Silent p.F158F 0.34 TCGA-ZF-AA51-01 9 114304657 114304657 C T ZNF483 Missense_Mutation p.S481L 0.06 deleterious(0.01) possibly_damaging(0.651) TCGA-ZF-AA51-01 9 119738401 119738401 C G ASTN2 Missense_Mutation p.K530N 0.40 deleterious_low_confidence(0) unknown(0) TCGA-ZF-AA51-01 9 130167755 130167755 C T SLC2A8 Silent p.L403L 0.30 TCGA-ZF-AA51-01 9 130573250 130573250 C G FPGS Missense_Mutation p.F438L 0.30 deleterious(0) benign(0.422) TCGA-ZF-AA51-01 9 134027165 134027165 G C NUP214 Missense_Mutation p.E774Q 0.28 probably_damaging(0.932) TCGA-ZF-AA51-01 9 136279826 136279826 C A REXO4 Missense_Mutation p.K177N 0.23 deleterious(0.02) possibly_damaging(0.477) TCGA-ZF-AA51-01 9 138594041 138594041 G C KCNT1 5'UTR 0.28 TCGA-ZF-AA51-01 9 14806697 14806697 G T FREM1 Missense_Mutation p.S1079Y 0.17 deleterious(0) probably_damaging(0.95) TCGA-ZF-AA51-01 9 14806702 14806702 G A FREM1 Silent p.L1077L 0.17 TCGA-ZF-AA51-01 9 14812908 14812908 C G FREM1 Missense_Mutation p.R932P 0.05 deleterious(0.01) possibly_damaging(0.865) TCGA-ZF-AA51-01 9 2110333 2110333 G A SMARCA2 Silent p.L1124L 0.25 TCGA-ZF-AA51-01 9 23692861 23692861 G C ELAVL2 Missense_Mutation p.D258E 0.07 tolerated(0.1) benign(0.016) TCGA-ZF-AA51-01 9 35077035 35077035 G C FANCG Nonsense_Mutation p.S237* 0.38 TCGA-ZF-AA51-01 9 35809936 35809936 C T SPAG8 Intron 0.13 TCGA-ZF-AA51-01 9 36123061 36123061 G C RECK 3'UTR 0.74 TCGA-ZF-AA51-01 9 73477919 73477919 C G TRPM3 Missense_Mutation p.E123Q 0.29 deleterious(0.02) possibly_damaging(0.718) TCGA-ZF-AA51-01 9 73736162 73736162 G C TRPM3 Missense_Mutation p.R37G 0.52 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-ZF-AA51-01 9 75407236 75407236 C G TMC1 Missense_Mutation p.R512G 0.18 deleterious(0.03) probably_damaging(0.975) TCGA-ZF-AA51-01 9 84205815 84205815 G A TLE1 Silent p.Y578Y 0.19 TCGA-ZF-AA51-01 9 8517918 8517918 T G PTPRD Missense_Mutation p.K491N 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA51-01 9 85913689 85913689 G T FRMD3 Silent p.I348I 0.15 TCGA-ZF-AA51-01 9 86498900 86498900 G C KIF27 Missense_Mutation p.S758C 0.22 tolerated(0.24) probably_damaging(0.987) TCGA-ZF-AA51-01 9 91150561 91150561 C G NXNL2 Nonsense_Mutation p.S71* 0.26 TCGA-ZF-AA51-01 X 100296327 100296327 C T TRMT2B Silent p.L94L 0.31 TCGA-ZF-AA51-01 X 10058934 10058934 G A WWC3 Silent p.L167L 0.25 TCGA-ZF-AA51-01 X 101826197 101826197 C G NXF4 RNA 0.32 TCGA-ZF-AA51-01 X 106046148 106046148 C T TBC1D8B Missense_Mutation p.S22F 0.13 deleterious(0) possibly_damaging(0.823) TCGA-ZF-AA51-01 X 106065249 106065249 G C TBC1D8B Missense_Mutation p.D135H 0.35 deleterious(0.02) benign(0.031) TCGA-ZF-AA51-01 X 106116801 106116801 C G TBC1D8B Missense_Mutation p.S990C 0.21 deleterious(0.03) benign(0.246) TCGA-ZF-AA51-01 X 106957959 106957959 C G TSC22D3 Silent p.L131L 0.14 TCGA-ZF-AA51-01 X 107939599 107939599 G A COL4A5 Silent p.K1689K 0.25 TCGA-ZF-AA51-01 X 109919569 109919569 C T CHRDL1 Missense_Mutation p.E423K 0.29 deleterious(0.01) benign(0.109) TCGA-ZF-AA51-01 X 118724734 118724734 A G NKRF Silent p.Y233Y 0.19 TCGA-ZF-AA51-01 X 119387502 119387502 T C ZBTB33 Missense_Mutation p.F78L 0.13 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA51-01 X 122757987 122757987 C A THOC2 Missense_Mutation p.G1081V 0.16 tolerated(0.55) benign(0.102) TCGA-ZF-AA51-01 X 123680846 123680846 G C TENM1 Silent p.L843L 0.19 TCGA-ZF-AA51-01 X 127185631 127185631 C T ACTRT1 Silent p.G185G 0.18 TCGA-ZF-AA51-01 X 12736650 12736650 G A FRMPD4 Silent p.V1235V 0.25 TCGA-ZF-AA51-01 X 128710427 128710427 C T OCRL Silent p.I671I 0.35 TCGA-ZF-AA51-01 X 129150108 129150108 G T BCORL1 Missense_Mutation p.K1120N 0.22 probably_damaging(0.999) TCGA-ZF-AA51-01 X 129318670 129318670 G C RAB33A Missense_Mutation p.E224Q 0.28 tolerated(0.3) benign(0.001) TCGA-ZF-AA51-01 X 12938526 12938526 C G TLR8 Nonsense_Mutation p.S456* 0.35 TCGA-ZF-AA51-01 X 133915913 133915913 G C FAM122B Silent p.L198L 0.31 TCGA-ZF-AA51-01 X 133988222 133988222 C G FAM122C Missense_Mutation p.L182V 0.23 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-ZF-AA51-01 X 134681100 134681100 C A DDX26B Missense_Mutation p.Q218K 0.27 deleterious(0) possibly_damaging(0.755) TCGA-ZF-AA51-01 X 135453603 135453603 G C GPR112 Missense_Mutation p.E2505Q 0.10 deleterious(0.01) possibly_damaging(0.737) TCGA-ZF-AA51-01 X 136113687 136113687 G A GPR101 Silent p.N49N 0.24 TCGA-ZF-AA51-01 X 140271168 140271168 C T LDOC1 Silent p.L13L 0.46 TCGA-ZF-AA51-01 X 152915626 152915626 G T DUSP9 Nonsense_Mutation p.E341* 0.39 TCGA-ZF-AA51-01 X 152935946 152935946 G C PNCK Nonsense_Mutation p.S416* 0.23 TCGA-ZF-AA51-01 X 1720174 1720174 G A AKAP17A Missense_Mutation p.G592E 0.13 tolerated_low_confidence(0.32) unknown(0) TCGA-ZF-AA51-01 X 18918793 18918793 C T PHKA2 Missense_Mutation p.E1018K 0.22 tolerated(0.81) benign(0.013) TCGA-ZF-AA51-01 X 20195168 20195168 C T RPS6KA3 Missense_Mutation p.E294K 0.30 deleterious(0.04) possibly_damaging(0.767) TCGA-ZF-AA51-01 X 37027964 37027964 G C FAM47C Missense_Mutation p.G494A 0.16 tolerated_low_confidence(0.62) probably_damaging(0.994) TCGA-ZF-AA51-01 X 37029032 37029032 G A FAM47C Missense_Mutation p.R850K 0.28 tolerated(0.17) possibly_damaging(0.652) TCGA-ZF-AA51-01 X 41196683 41196683 C T DDX3X Missense_Mutation p.S23F 0.17 deleterious(0.01) benign(0.219) TCGA-ZF-AA51-01 X 44894227 44894227 G - KDM6A Frame_Shift_Del p.E206Kfs*36 0.16 TCGA-ZF-AA51-01 X 44922690 44922702 GGTACGATCTACT - KDM6A Frame_Shift_Del p.V518Efs*26 0.32 TCGA-ZF-AA51-01 X 47272750 47272750 G C ZNF157 Missense_Mutation p.K426N 0.34 tolerated(0.06) benign(0.4) TCGA-ZF-AA51-01 X 47273035 47273035 G A ZNF157 3'UTR 0.43 TCGA-ZF-AA51-01 X 49028421 49028421 G A PLP2 Missense_Mutation p.G25E 0.13 deleterious(0) probably_damaging(0.958) TCGA-ZF-AA51-01 X 49598526 49598526 G T PAGE4 3'UTR 0.41 TCGA-ZF-AA51-01 X 49854786 49854786 G T CLCN5 Silent p.R586R 0.19 TCGA-ZF-AA51-01 X 54957733 54957733 C G TRO 3'UTR 0.22 TCGA-ZF-AA51-01 X 57515266 57515266 C G FAAH2 Missense_Mutation p.I500M 0.33 deleterious(0.05) possibly_damaging(0.869) TCGA-ZF-AA51-01 X 65409696 65409696 C A HEPH Missense_Mutation p.P381T 0.41 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 X 69649412 69649412 C A GDPD2 Missense_Mutation p.P336T 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-ZF-AA51-01 X 69871318 69871318 C G TEX11 Missense_Mutation p.E504Q 0.42 tolerated(0.14) benign(0.147) TCGA-ZF-AA51-01 X 70347966 70347966 G T MED12 Missense_Mutation p.D1069Y 0.20 possibly_damaging(0.489) TCGA-ZF-AA51-01 X 70367745 70367745 G A NLGN3 Missense_Mutation p.G49E 0.18 deleterious(0) probably_damaging(1) TCGA-ZF-AA51-01 X 70367798 70367798 G A NLGN3 Missense_Mutation p.D67N 0.17 tolerated(0.16) probably_damaging(0.935) TCGA-ZF-AA51-01 X 70368014 70368014 G A NLGN3 Missense_Mutation p.E139K 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA51-01 X 70470559 70470559 C G ZMYM3 Missense_Mutation p.D266H 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ZF-AA51-01 X 71427455 71427455 C G ERCC6L Missense_Mutation p.D388H 0.38 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA51-01 X 73047089 73047089 C A XIST RNA 0.22 TCGA-ZF-AA51-01 X 73071200 73071200 G A XIST RNA 0.10 TCGA-ZF-AA51-01 X 73524385 73524385 G C ZCCHC13 Missense_Mutation p.G95A 0.19 deleterious(0) probably_damaging(0.94) TCGA-ZF-AA51-01 X 73962016 73962016 G T KIAA2022 Nonsense_Mutation p.C792* 0.23 TCGA-ZF-AA52-01 10 33552690 33552690 T G NRP1 Missense_Mutation p.K181T 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-ZF-AA52-01 10 68280468 68280468 C T CTNNA3 Missense_Mutation p.E480K 0.10 deleterious(0.01) possibly_damaging(0.621) TCGA-ZF-AA52-01 11 111941769 111941769 C T PIH1D2 Missense_Mutation p.M180I 0.08 tolerated(0.28) benign(0.004) TCGA-ZF-AA52-01 11 20649547 20649547 C G SLC6A5 Missense_Mutation p.Q473E 0.31 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA52-01 11 22647314 22647314 G C FANCF Missense_Mutation p.L15V 0.13 tolerated(0.06) benign(0.212) TCGA-ZF-AA52-01 11 33047313 33047313 G A DEPDC7 Missense_Mutation p.R61Q 0.14 tolerated(0.19) benign(0.016) TCGA-ZF-AA52-01 11 43436143 43436143 C T TTC17 Silent p.L690L 0.12 TCGA-ZF-AA52-01 11 43772475 43772475 A G HSD17B12 Missense_Mutation p.T59A 0.10 deleterious(0) probably_damaging(0.974) TCGA-ZF-AA52-01 11 56086351 56086351 C G OR8K3 Nonsense_Mutation p.S190* 0.05 TCGA-ZF-AA52-01 11 56086471 56086471 C A OR8K3 Missense_Mutation p.S230Y 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZF-AA52-01 11 57076499 57076499 G C TNKS1BP1 Missense_Mutation p.S1229C 0.09 deleterious(0.02) probably_damaging(0.927) TCGA-ZF-AA52-01 11 64673257 64673258 - G ATG2A Frame_Shift_Ins p.T1110Hfs*15 0.08 TCGA-ZF-AA52-01 11 74547240 74547240 C T RNF169 Missense_Mutation p.S531F 0.06 deleterious(0.04) benign(0.004) TCGA-ZF-AA52-01 11 77933200 77933200 C T GAB2 Missense_Mutation p.D537N 0.12 tolerated(0.16) benign(0.142) TCGA-ZF-AA52-01 11 89774277 89774277 G C TRIM49C Missense_Mutation p.L306F 0.15 deleterious(0.02) benign(0.124) TCGA-ZF-AA52-01 12 117014184 117014184 G A MAP1LC3B2 3'UTR 0.08 TCGA-ZF-AA52-01 12 125298844 125298844 C T SCARB1 Silent p.E178E 0.23 TCGA-ZF-AA52-01 12 132562241 132562241 C A EP400 3'UTR 0.20 TCGA-ZF-AA52-01 12 48737084 48737084 C A ZNF641 Missense_Mutation p.R330L 0.22 tolerated(0.15) probably_damaging(0.997) TCGA-ZF-AA52-01 12 6833744 6833744 C T COPS7A Intron 0.10 TCGA-ZF-AA52-01 12 7842656 7842656 G C GDF3 Missense_Mutation p.L305V 0.08 deleterious(0) probably_damaging(0.978) TCGA-ZF-AA52-01 14 104026912 104026912 C T BAG5 Missense_Mutation p.R238Q 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.833) TCGA-ZF-AA52-01 14 23885488 23885488 G A MYH7 Missense_Mutation p.R1560W 0.08 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA52-01 14 67805367 67805367 C G ATP6V1D Missense_Mutation p.E239Q 0.17 tolerated(0.22) benign(0.017) TCGA-ZF-AA52-01 14 71568773 71568773 G A PCNX Missense_Mutation p.E1886K 0.09 deleterious(0.02) possibly_damaging(0.728) TCGA-ZF-AA52-01 14 81952724 81952724 G A SEL1L Silent p.G569G 0.19 TCGA-ZF-AA52-01 15 22382503 22382503 G C OR4N4 Missense_Mutation p.E11Q 0.35 deleterious(0.01) possibly_damaging(0.721) TCGA-ZF-AA52-01 15 24921214 24921214 C T NPAP1 Missense_Mutation p.A67V 0.58 tolerated(0.13) possibly_damaging(0.682) TCGA-ZF-AA52-01 15 28501250 28501250 G C HERC2 Missense_Mutation p.L911V 0.09 possibly_damaging(0.65) TCGA-ZF-AA52-01 15 35529688 35529688 C T ANP32AP1 RNA 0.09 TCGA-ZF-AA52-01 15 40328520 40328520 G A SRP14 3'UTR 0.35 TCGA-ZF-AA52-01 15 43447023 43447023 C T TMEM62 Silent p.I392I 0.11 TCGA-ZF-AA52-01 15 43739678 43739678 G A TP53BP1 Missense_Mutation p.P908S 0.47 tolerated(0.23) probably_damaging(0.978) TCGA-ZF-AA52-01 16 1248689 1248689 G A CACNA1H Missense_Mutation p.V240I 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-AA52-01 16 23713857 23713857 G C ERN2 Missense_Mutation p.P360R 0.08 deleterious(0) probably_damaging(1) TCGA-ZF-AA52-01 16 24372974 24372974 C T CACNG3 Silent p.D246D 0.07 TCGA-ZF-AA52-01 16 46642218 46642218 C T SHCBP1 Missense_Mutation p.R227Q 0.10 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA52-01 16 4829757 4829757 C T SEPT12 Missense_Mutation p.D253N 0.09 tolerated(0.3) probably_damaging(0.981) TCGA-ZF-AA52-01 16 5075606 5075606 G T NAGPA Missense_Mutation p.S474Y 0.30 possibly_damaging(0.541) TCGA-ZF-AA52-01 16 53276849 53276849 G A CHD9 Missense_Mutation p.R992Q 0.08 probably_damaging(0.999) TCGA-ZF-AA52-01 16 538871 538871 C T RAB11FIP3 Missense_Mutation p.S379F 0.13 deleterious(0) probably_damaging(0.91) TCGA-ZF-AA52-01 16 56670350 56670350 G A MT1M 3'Flank 0.16 TCGA-ZF-AA52-01 16 67401286 67401286 A G LRRC36 Missense_Mutation p.H374R 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.713) TCGA-ZF-AA52-01 16 708562 708562 C T WDR90 Missense_Mutation p.T935M 0.15 deleterious(0.02) benign(0.002) TCGA-ZF-AA52-01 16 76592404 76592404 A T CNTNAP4 Missense_Mutation p.I1178F 0.38 deleterious(0) possibly_damaging(0.675) TCGA-ZF-AA52-01 17 12666431 12666431 A G MYOCD Missense_Mutation p.K811E 0.17 deleterious(0.01) possibly_damaging(0.72) TCGA-ZF-AA52-01 17 264003 264003 G A C17orf97 3'UTR 0.12 TCGA-ZF-AA52-01 17 40651057 40651057 A G ATP6V0A1 Missense_Mutation p.H566R 0.39 deleterious(0.04) possibly_damaging(0.891) TCGA-ZF-AA52-01 17 59557513 59557513 C G TBX4 Nonsense_Mutation p.S285* 0.12 TCGA-ZF-AA52-01 17 7577121 7577121 G T TP53 Missense_Mutation p.R273S 0.27 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA52-01 17 7578397 7578398 - G TP53 Frame_Shift_Ins p.H178Pfs*3 0.27 TCGA-ZF-AA52-01 18 28934970 28934970 G C DSG1 Silent p.L937L 0.08 TCGA-ZF-AA52-01 18 58039271 58039271 G A MC4R Silent p.I104I 0.09 TCGA-ZF-AA52-01 18 61154185 61154185 C G SERPINB5 Missense_Mutation p.H59D 0.14 tolerated(0.08) probably_damaging(0.946) TCGA-ZF-AA52-01 19 11363598 11363598 C T DOCK6 Missense_Mutation p.E57K 0.29 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA52-01 19 14580222 14580222 C T PKN1 Silent p.F688F 0.10 TCGA-ZF-AA52-01 19 17752249 17752249 G A UNC13A Silent p.D863D 0.14 TCGA-ZF-AA52-01 19 21492143 21492143 C T ZNF708 Missense_Mutation p.G44D 0.12 deleterious(0.01) possibly_damaging(0.651) TCGA-ZF-AA52-01 19 36349683 36349683 C T KIRREL2 Missense_Mutation p.R147W 0.36 deleterious(0.01) possibly_damaging(0.773) TCGA-ZF-AA52-01 19 39018301 39018301 G A RYR1 Silent p.P3567P 0.20 TCGA-ZF-AA52-01 19 39306538 39306538 A G ECH1 Missense_Mutation p.Y281H 0.48 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA52-01 19 44777387 44777387 C A ZNF233 Missense_Mutation p.Q192K 0.13 tolerated(0.05) benign(0.027) TCGA-ZF-AA52-01 19 52090205 52090205 G C ZNF175 Silent p.L207L 0.05 TCGA-ZF-AA52-01 19 53282118 53282118 C G ZNF600 5'UTR 0.11 TCGA-ZF-AA52-01 19 53668146 53668146 G A ZNF665 Nonsense_Mutation p.Q533* 0.10 TCGA-ZF-AA52-01 19 59063285 59063285 C G CHMP2A Missense_Mutation p.D177H 0.12 tolerated(0.1) possibly_damaging(0.895) TCGA-ZF-AA52-01 1 100733739 100733739 C T RTCA Nonsense_Mutation p.R73* 0.35 TCGA-ZF-AA52-01 1 117544403 117544403 G A CD101 5'UTR 0.08 TCGA-ZF-AA52-01 1 120295241 120295242 - G HMGCS2 Frame_Shift_Ins p.S451Lfs*8 0.11 TCGA-ZF-AA52-01 1 14107021 14107021 A G PRDM2 Missense_Mutation p.R911G 0.15 benign(0.024) TCGA-ZF-AA52-01 1 144857656 144857656 G T PDE4DIP Missense_Mutation p.S2133Y 0.04 tolerated(0.57) possibly_damaging(0.771) TCGA-ZF-AA52-01 1 152276118 152276118 G A FLG Silent p.H3748H 0.07 TCGA-ZF-AA52-01 1 152278026 152278026 T C FLG Silent p.G3112G 0.39 TCGA-ZF-AA52-01 1 153658301 153658301 C T NPR1 Missense_Mutation p.S542F 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-ZF-AA52-01 1 156640790 156640790 C G NES Missense_Mutation p.E1064Q 0.09 deleterious(0.04) benign(0.139) TCGA-ZF-AA52-01 1 159277650 159277650 G C FCER1A Missense_Mutation p.L234F 0.47 deleterious(0.03) possibly_damaging(0.686) TCGA-ZF-AA52-01 1 161140445 161140445 G A PPOX Silent p.E378E 0.11 TCGA-ZF-AA52-01 1 176659342 176659342 G A PAPPA2 Missense_Mutation p.G736E 0.13 deleterious(0) probably_damaging(1) TCGA-ZF-AA52-01 1 186157078 186157078 G C HMCN1 Missense_Mutation p.R5493T 0.14 probably_damaging(0.942) TCGA-ZF-AA52-01 1 202391822 202391822 A C PPP1R12B Missense_Mutation p.E166A 0.44 deleterious(0) probably_damaging(0.926) TCGA-ZF-AA52-01 1 214705680 214705680 C T PTPN14 Intron 0.40 TCGA-ZF-AA52-01 1 216420526 216420526 C T USH2A Missense_Mutation p.R737Q 0.07 benign(0.009) TCGA-ZF-AA52-01 1 224586674 224586674 C T WDR26 Silent p.L494L 0.07 TCGA-ZF-AA52-01 1 247013010 247013010 G A AHCTF1 Missense_Mutation p.R2109W 0.53 deleterious(0.04) probably_damaging(1) TCGA-ZF-AA52-01 1 247587373 247587373 G C NLRP3 Missense_Mutation p.D210H 0.09 deleterious(0) possibly_damaging(0.548) TCGA-ZF-AA52-01 1 31440091 31440091 G A PUM1 Missense_Mutation p.A571V 0.09 deleterious(0.04) benign(0.069) TCGA-ZF-AA52-01 1 35972684 35972684 C T KIAA0319L Silent p.L65L 0.05 TCGA-ZF-AA52-01 1 45797213 45797213 A G MUTYH Missense_Mutation p.L398P 0.12 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA52-01 1 55452087 55452087 C T TMEM61 Silent p.L111L 0.08 TCGA-ZF-AA52-01 20 24994187 24994187 A G ACSS1 Missense_Mutation p.F522L 0.11 tolerated(0.1) benign(0.014) TCGA-ZF-AA52-01 20 31622577 31622577 G A BPIFB6 Missense_Mutation p.G104E 0.07 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA52-01 20 62839059 62839059 C T MYT1 Silent p.N170N 0.07 TCGA-ZF-AA52-01 21 45379721 45379721 C T AGPAT3 Silent p.L53L 0.44 TCGA-ZF-AA52-01 21 45479086 45479086 G A TRAPPC10 Missense_Mutation p.G261R 0.35 deleterious(0.01) probably_damaging(0.928) TCGA-ZF-AA52-01 22 30416238 30416238 C T MTMR3 Missense_Mutation p.H864Y 0.12 tolerated_low_confidence(0.23) benign(0.001) TCGA-ZF-AA52-01 2 12880739 12880739 T C TRIB2 Missense_Mutation p.L284P 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA52-01 2 130918809 130918809 C T SMPD4 Missense_Mutation p.A340T 0.04 tolerated(0.52) benign(0.013) TCGA-ZF-AA52-01 2 132276809 132276809 G A AC093838.4 RNA 0.20 TCGA-ZF-AA52-01 2 168105039 168105039 C T XIRP2 Silent p.L2379L 0.31 TCGA-ZF-AA52-01 2 168115607 168115607 G T XIRP2 3'UTR 0.40 TCGA-ZF-AA52-01 2 170055359 170055359 C T LRP2 Missense_Mutation p.V2839I 0.17 benign(0.001) TCGA-ZF-AA52-01 2 191364988 191364988 C T MFSD6 3'UTR 0.43 TCGA-ZF-AA52-01 2 197002453 197002453 C T STK17B Silent p.E279E 0.17 TCGA-ZF-AA52-01 2 218758272 218758272 C T TNS1 Missense_Mutation p.G78S 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA52-01 2 231307706 231307706 C T SP100 Silent p.F54F 0.22 TCGA-ZF-AA52-01 3 122004099 122004099 G C CASR 3'UTR 0.08 TCGA-ZF-AA52-01 3 124103710 124103710 G A KALRN Missense_Mutation p.D595N 0.07 tolerated(0.14) unknown(0) TCGA-ZF-AA52-01 3 140407237 140407237 C G TRIM42 Silent p.L571L 0.05 TCGA-ZF-AA52-01 3 151164711 151164711 C T IGSF10 Missense_Mutation p.G1020R 0.11 tolerated(0.43) benign(0.187) TCGA-ZF-AA52-01 3 157177909 157177909 G C VEPH1 Intron 0.06 TCGA-ZF-AA52-01 3 160143880 160143880 G A SMC4 Missense_Mutation p.E833K 0.06 tolerated(0.78) benign(0.005) TCGA-ZF-AA52-01 3 167728179 167728179 C T GOLIM4 Missense_Mutation p.E657K 0.06 deleterious_low_confidence(0) benign(0.393) TCGA-ZF-AA52-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-ZF-AA52-01 3 193176994 193176994 G A ATP13A4 Missense_Mutation p.S517L 0.13 tolerated(0.14) benign(0.016) TCGA-ZF-AA52-01 3 53326485 53326485 G T DCP1A Missense_Mutation p.P333T 0.08 deleterious(0.01) benign(0.341) TCGA-ZF-AA52-01 3 62636738 62636738 C T CADPS Silent p.K329K 0.08 TCGA-ZF-AA52-01 3 64005039 64005039 G A PSMD6 Missense_Mutation p.L144F 0.10 tolerated(0.13) probably_damaging(0.914) TCGA-ZF-AA52-01 3 69097054 69097054 T C TMF1 Missense_Mutation p.I268V 0.13 tolerated_low_confidence(0.05) benign(0.066) TCGA-ZF-AA52-01 3 97806746 97806746 G A OR5AC2 Missense_Mutation p.G244S 0.20 tolerated(0.76) benign(0.002) TCGA-ZF-AA52-01 3 97852440 97852440 C T OR5H1 Missense_Mutation p.S300L 0.12 tolerated(0.06) possibly_damaging(0.489) TCGA-ZF-AA52-01 3 99513618 99513618 T C COL8A1 Silent p.A291A 0.14 TCGA-ZF-AA52-01 4 101109057 101109057 T G DDIT4L Missense_Mutation p.K120T 0.11 tolerated(0.17) benign(0.054) TCGA-ZF-AA52-01 4 31144159 31144159 C T PCDH7 Silent p.G1152G 0.13 TCGA-ZF-AA52-01 4 68447082 68447082 C A STAP1 Silent p.V141V 0.07 TCGA-ZF-AA52-01 4 75312433 75312433 G A AREG Missense_Mutation p.D82N 0.16 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA52-01 4 88584476 88584476 C T DMP1 3'UTR 0.14 TCGA-ZF-AA52-01 4 89018696 89018696 G A ABCG2 Missense_Mutation p.S519L 0.13 deleterious(0.01) benign(0.033) TCGA-ZF-AA52-01 5 140261997 140261997 C T PCDHA13 Silent p.I48I 0.08 TCGA-ZF-AA52-01 5 140589001 140589001 G A PCDHB12 Silent p.P174P 0.12 TCGA-ZF-AA52-01 5 140855725 140855725 G C PCDHGC3 Silent p.G14G 0.19 TCGA-ZF-AA52-01 5 19571698 19571698 T A CDH18 Missense_Mutation p.S415C 0.05 tolerated(0.06) possibly_damaging(0.89) TCGA-ZF-AA52-01 5 64100086 64100086 G A CWC27 Missense_Mutation p.E271K 0.18 tolerated(0.3) benign(0.089) TCGA-ZF-AA52-01 5 96244766 96244766 C T ERAP2 Missense_Mutation p.S705L 0.15 tolerated(0.73) benign(0) TCGA-ZF-AA52-01 6 142688880 142688880 A G GPR126 Missense_Mutation p.N93S 0.36 tolerated(0.15) possibly_damaging(0.615) TCGA-ZF-AA52-01 6 170892625 170892625 C T PDCD2 Missense_Mutation p.R165K 0.14 tolerated(1) benign(0.009) TCGA-ZF-AA52-01 6 27100424 27100424 C T HIST1H2BJ Missense_Mutation p.E36K 0.07 deleterious_low_confidence(0.01) benign(0.183) TCGA-ZF-AA52-01 6 32726640 32726640 G A HLA-DQB2 Silent p.I211I 0.20 TCGA-ZF-AA52-01 6 36483228 36483228 C T STK38 Missense_Mutation p.E186K 0.05 deleterious(0.02) probably_damaging(0.98) TCGA-ZF-AA52-01 6 52871148 52871148 C T ICK Missense_Mutation p.R570K 0.08 deleterious(0.03) possibly_damaging(0.589) TCGA-ZF-AA52-01 6 96651902 96651902 G A FUT9 Missense_Mutation p.D291N 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-AA52-01 7 152480288 152480288 T C ACTR3B Missense_Mutation p.Y21H 0.09 deleterious(0) possibly_damaging(0.794) TCGA-ZF-AA52-01 7 21721173 21721173 C T DNAH11 Silent p.L1785L 0.14 TCGA-ZF-AA52-01 7 86811620 86811620 C T DMTF1 Missense_Mutation p.R263W 0.17 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA52-01 7 97823452 97823452 C T LMTK2 Silent p.L1225L 0.14 TCGA-ZF-AA52-01 8 125035722 125035722 C G FER1L6 Silent p.L724L 0.20 TCGA-ZF-AA52-01 8 133769485 133769485 G A TMEM71 Silent p.F32F 0.11 TCGA-ZF-AA52-01 8 145095890 145095890 G A SPATC1 Silent p.P396P 0.13 TCGA-ZF-AA52-01 8 40554907 40554907 T C ZMAT4 Missense_Mutation p.D69G 0.17 tolerated(0.65) benign(0.004) TCGA-ZF-AA52-01 8 6682777 6682777 G A XKR5 RNA 0.39 TCGA-ZF-AA52-01 9 136282737 136282737 C T REXO4 Intron 0.09 TCGA-ZF-AA52-01 9 21854824 21854824 C T MTAP Silent p.I215I 0.22 TCGA-ZF-AA52-01 9 86292877 86292877 C T UBQLN1 Splice_Site p.X291_splice 0.18 TCGA-ZF-AA52-01 X 101911664 101911664 C T GPRASP1 Silent p.F941F 0.10 TCGA-ZF-AA52-01 X 134424953 134424953 C G ZNF75D Missense_Mutation p.E269Q 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-ZF-AA52-01 X 13607687 13607687 C T EGFL6 Silent p.H29H 0.13 TCGA-ZF-AA52-01 X 17047694 17047694 C T REPS2 Missense_Mutation p.S240L 0.22 tolerated(0.13) benign(0.019) TCGA-ZF-AA52-01 X 71887293 71887293 G C PHKA1 Missense_Mutation p.L217V 0.16 deleterious(0) probably_damaging(0.972) TCGA-ZF-AA52-01 X 76937014 76937014 G A ATRX Missense_Mutation p.S1245L 0.23 probably_damaging(0.953) TCGA-ZF-AA53-01 10 100189617 100189617 C G HPS1 Missense_Mutation p.Q266H 0.13 tolerated(0.1) benign(0.018) TCGA-ZF-AA53-01 10 134563304 134563304 C T INPP5A Silent p.F286F 0.07 TCGA-ZF-AA53-01 10 858801 858801 G C LARP4B 3'UTR 0.12 TCGA-ZF-AA53-01 10 860754 860754 G A LARP4B Silent p.H619H 0.27 TCGA-ZF-AA53-01 10 861005 861005 G A LARP4B Silent p.L567L 0.19 TCGA-ZF-AA53-01 10 89268278 89268278 G A MINPP1 Missense_Mutation p.D275N 0.29 tolerated(0.84) benign(0.012) TCGA-ZF-AA53-01 10 98078233 98078233 T C DNTT Missense_Mutation p.C110R 0.09 deleterious(0.03) probably_damaging(0.956) TCGA-ZF-AA53-01 10 99025636 99025636 G A ARHGAP19 Silent p.L101L 0.19 TCGA-ZF-AA53-01 10 99025873 99025873 G A ARHGAP19 Silent p.I22I 0.10 TCGA-ZF-AA53-01 11 113857573 113857573 C G HTR3A Missense_Mutation p.L353V 0.13 deleterious(0) probably_damaging(0.919) TCGA-ZF-AA53-01 11 1261561 1261561 C T MUC5B Missense_Mutation p.T1309M 0.10 unknown(0) TCGA-ZF-AA53-01 11 20424521 20424521 C G PRMT3 Missense_Mutation p.F254L 0.06 possibly_damaging(0.763) TCGA-ZF-AA53-01 11 46748311 46748311 G C F2 Missense_Mutation p.E352Q 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-ZF-AA53-01 11 59210981 59210981 G A OR5A1 Missense_Mutation p.E114K 0.20 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA53-01 11 61135339 61135339 G C TMEM138 Intron 0.06 TCGA-ZF-AA53-01 11 65392933 65392933 C T PCNXL3 Silent p.A1029A 0.26 TCGA-ZF-AA53-01 11 66133473 66133473 G C SLC29A2 Missense_Mutation p.I331M 0.12 deleterious(0) possibly_damaging(0.85) TCGA-ZF-AA53-01 11 67257846 67257846 C T AIP Silent p.L235L 0.11 TCGA-ZF-AA53-01 11 70028709 70028709 C G ANO1 Silent p.L835L 0.09 TCGA-ZF-AA53-01 11 7654108 7654108 G C PPFIBP2 Missense_Mutation p.R360T 0.19 tolerated(0.15) benign(0.056) TCGA-ZF-AA53-01 11 77412014 77412014 C G RSF1 Missense_Mutation p.E754Q 0.17 tolerated(0.21) benign(0.096) TCGA-ZF-AA53-01 11 92573783 92573783 C A FAT3 Missense_Mutation p.S3475Y 0.13 probably_damaging(0.992) TCGA-ZF-AA53-01 12 102542188 102542188 C G PARPBP Missense_Mutation p.Q112E 0.06 tolerated(0.32) benign(0.004) TCGA-ZF-AA53-01 12 110783148 110783148 C G ATP2A2 Missense_Mutation p.S901C 0.13 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA53-01 12 120262972 120262972 G T CIT Missense_Mutation p.F318L 0.17 deleterious(0.03) possibly_damaging(0.61) TCGA-ZF-AA53-01 12 123003498 123003498 C G RSRC2 Missense_Mutation p.D96H 0.14 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-ZF-AA53-01 12 124241429 124241429 C T ATP6V0A2 Silent p.V787V 0.27 TCGA-ZF-AA53-01 12 14634168 14634168 C T ATF7IP Intron 0.16 TCGA-ZF-AA53-01 12 21015357 21015357 G A SLCO1B3 Missense_Mutation p.E165K 0.14 deleterious(0.03) benign(0.232) TCGA-ZF-AA53-01 12 40076604 40076604 C G C12orf40 Nonsense_Mutation p.S293* 0.13 TCGA-ZF-AA53-01 12 52775216 52775216 C T KRT84 Missense_Mutation p.E336K 0.18 deleterious(0.01) possibly_damaging(0.67) TCGA-ZF-AA53-01 12 56495058 56495058 C T ERBB3 Silent p.L1139L 0.23 TCGA-ZF-AA53-01 12 56495511 56495511 C G ERBB3 Missense_Mutation p.S1234C 0.08 deleterious(0.01) possibly_damaging(0.818) TCGA-ZF-AA53-01 12 69656182 69656182 G C CPSF6 Missense_Mutation p.S500T 0.20 deleterious(0.04) unknown(0) TCGA-ZF-AA53-01 13 107187316 107187316 G T EFNB2 5'UTR 0.14 TCGA-ZF-AA53-01 13 39438697 39438697 C T FREM2 Missense_Mutation p.S2646L 0.19 deleterious(0) benign(0.356) TCGA-ZF-AA53-01 13 52718906 52718906 G A NEK3 Missense_Mutation p.P242S 0.21 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA53-01 13 95095885 95095885 G A DCT Missense_Mutation p.H429Y 0.16 deleterious(0) probably_damaging(0.964) TCGA-ZF-AA53-01 13 98828328 98828328 C G RNF113B 3'UTR 0.12 TCGA-ZF-AA53-01 13 98828975 98828975 C T RNF113B Silent p.A172A 0.12 TCGA-ZF-AA53-01 13 99371507 99371507 G C SLC15A1 Silent p.L208L 0.15 TCGA-ZF-AA53-01 14 24787606 24787606 G A ADCY4 3'UTR 0.24 TCGA-ZF-AA53-01 14 39796178 39796178 C G CTAGE5 Missense_Mutation p.L600V 0.15 deleterious(0) benign(0.238) TCGA-ZF-AA53-01 14 64749768 64749768 C G ESR2 5'UTR 0.26 TCGA-ZF-AA53-01 14 75201625 75201625 C G FCF1 Missense_Mutation p.R197G 0.15 tolerated(0.05) benign(0.11) TCGA-ZF-AA53-01 14 75201726 75201726 C G FCF1 3'UTR 0.16 TCGA-ZF-AA53-01 14 88895746 88895746 G C SPATA7 Missense_Mutation p.E323Q 0.15 tolerated(1) benign(0.001) TCGA-ZF-AA53-01 14 92624050 92624050 C T CPSF2 Missense_Mutation p.S548F 0.24 deleterious(0) probably_damaging(1) TCGA-ZF-AA53-01 15 100185846 100185846 C T MEF2A Silent p.L45L 0.12 TCGA-ZF-AA53-01 15 56981336 56981336 G A ZNF280D Missense_Mutation p.S228L 0.09 deleterious(0.03) probably_damaging(1) TCGA-ZF-AA53-01 15 75195073 75195073 C G FAM219B Missense_Mutation p.E162Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA53-01 15 83499792 83499792 G A WHAMM Missense_Mutation p.E695K 0.10 tolerated(0.37) benign(0.121) TCGA-ZF-AA53-01 16 1826168 1826168 G C EME2 Missense_Mutation p.D357H 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-AA53-01 16 1827159 1827159 G A SPSB3 Missense_Mutation p.S336F 0.07 deleterious_low_confidence(0.03) benign(0.092) TCGA-ZF-AA53-01 16 21261962 21261962 G T ANKS4B Nonsense_Mutation p.E359* 0.08 TCGA-ZF-AA53-01 16 2807528 2807528 G A SRRM2 Missense_Mutation p.E100K 0.15 unknown(0) TCGA-ZF-AA53-01 16 28838198 28838198 C T ATXN2L Missense_Mutation p.S211L 0.08 deleterious(0) probably_damaging(0.948) TCGA-ZF-AA53-01 16 30005806 30005806 C A HIRIP3 Silent p.L220L 0.06 TCGA-ZF-AA53-01 16 30005886 30005886 C A HIRIP3 Nonsense_Mutation p.E194* 0.09 TCGA-ZF-AA53-01 16 3490894 3490894 G C ZNF597 Missense_Mutation p.Q25E 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA53-01 16 87902825 87902825 G C SLC7A5 Missense_Mutation p.I68M 0.21 deleterious(0) probably_damaging(1) TCGA-ZF-AA53-01 17 16701795 16701795 G A CCDC144A 3'UTR 0.10 TCGA-ZF-AA53-01 17 1675246 1675246 C T SERPINF1 Missense_Mutation p.R174C 0.26 deleterious(0) possibly_damaging(0.814) TCGA-ZF-AA53-01 17 18219700 18219700 G A SMCR8 Silent p.L199L 0.26 TCGA-ZF-AA53-01 17 33984655 33984655 G A AP2B1 Missense_Mutation p.A612T 0.06 tolerated(0.23) benign(0.031) TCGA-ZF-AA53-01 17 34863731 34863731 G A MYO19 Missense_Mutation p.P422S 0.20 tolerated(0.07) possibly_damaging(0.589) TCGA-ZF-AA53-01 17 37627496 37627496 G C CDK12 Missense_Mutation p.E471Q 0.10 possibly_damaging(0.775) TCGA-ZF-AA53-01 17 41063413 41063413 C T G6PC Silent p.V348V 0.13 TCGA-ZF-AA53-01 17 59489712 59489712 C G C17orf82 Missense_Mutation p.L126V 0.09 tolerated_low_confidence(0.34) benign(0.003) TCGA-ZF-AA53-01 17 72363715 72363715 C T GPR142 Missense_Mutation p.A24V 0.19 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-ZF-AA53-01 17 72859248 72859248 G C FDXR Missense_Mutation p.S475C 0.15 deleterious(0) possibly_damaging(0.769) TCGA-ZF-AA53-01 17 73228974 73228974 G A NUP85 Missense_Mutation p.M475I 0.16 deleterious(0.01) benign(0.403) TCGA-ZF-AA53-01 17 73494276 73494276 C T KIAA0195 Silent p.L1170L 0.13 TCGA-ZF-AA53-01 17 73494288 73494288 C G KIAA0195 Silent p.L1174L 0.11 TCGA-ZF-AA53-01 17 73494397 73494397 C G KIAA0195 Missense_Mutation p.L1211V 0.27 tolerated(0.62) benign(0.007) TCGA-ZF-AA53-01 17 73495517 73495517 C G KIAA0195 3'UTR 0.30 TCGA-ZF-AA53-01 17 7579406 7579406 G C TP53 Nonsense_Mutation p.S94* 0.29 TCGA-ZF-AA53-01 17 7579854 7579854 G C TP53 Nonsense_Mutation p.S20* 0.10 TCGA-ZF-AA53-01 17 76450732 76450732 G A DNAH17 Missense_Mutation p.A3395V 0.22 possibly_damaging(0.761) TCGA-ZF-AA53-01 17 79589209 79589209 G C NPLOC4 Silent p.L64L 0.24 TCGA-ZF-AA53-01 17 79671335 79671335 G C SLC25A10 Missense_Mutation p.E46Q 0.32 tolerated_low_confidence(0.08) benign(0.003) TCGA-ZF-AA53-01 18 2587859 2587859 G C NDC80 Missense_Mutation p.E234Q 0.36 tolerated(0.15) benign(0.004) TCGA-ZF-AA53-01 18 33243765 33243765 G C GALNT1 Missense_Mutation p.G105R 0.12 tolerated(0.29) benign(0.017) TCGA-ZF-AA53-01 18 48248454 48248454 G A MAPK4 Missense_Mutation p.E280K 0.27 tolerated(0.46) benign(0.003) TCGA-ZF-AA53-01 19 12060550 12060550 A G ZNF700 Missense_Mutation p.K571E 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA53-01 19 12061103 12061103 C G ZNF700 3'UTR 0.05 TCGA-ZF-AA53-01 19 14070171 14070171 G C DCAF15 Missense_Mutation p.E367Q 0.25 tolerated(0.22) possibly_damaging(0.557) TCGA-ZF-AA53-01 19 19153517 19153517 C T ARMC6 Intron 0.17 TCGA-ZF-AA53-01 19 36109039 36109039 G A HAUS5 Missense_Mutation p.E255K 0.26 deleterious(0.05) possibly_damaging(0.547) TCGA-ZF-AA53-01 19 4207552 4207552 C G ANKRD24 Missense_Mutation p.R198G 0.16 deleterious(0.02) probably_damaging(0.913) TCGA-ZF-AA53-01 19 42874353 42874353 G A MEGF8 Missense_Mutation p.E2216K 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-ZF-AA53-01 19 51561871 51561871 C T KLK13 Missense_Mutation p.R190H 0.22 tolerated(0.28) benign(0.01) TCGA-ZF-AA53-01 19 55798410 55798410 C T BRSK1 Nonsense_Mutation p.Q58* 0.18 TCGA-ZF-AA53-01 19 56423179 56423179 G A NLRP13 Silent p.D668D 0.05 TCGA-ZF-AA53-01 1 100964766 100964766 C T CDC14A Missense_Mutation p.S568F 0.22 deleterious_low_confidence(0.04) benign(0.22) TCGA-ZF-AA53-01 1 11346203 11346203 C T UBIAD1 3'UTR 0.10 TCGA-ZF-AA53-01 1 149763001 149763001 G A FCGR1A Silent p.L351L 0.17 TCGA-ZF-AA53-01 1 152084924 152084924 C T TCHH Missense_Mutation p.E257K 0.15 unknown(0) TCGA-ZF-AA53-01 1 152281252 152281252 C T FLG Missense_Mutation p.R2037Q 0.11 possibly_damaging(0.553) TCGA-ZF-AA53-01 1 155288465 155288465 C G FDPS Missense_Mutation p.Q232E 0.16 deleterious(0.02) benign(0.18) TCGA-ZF-AA53-01 1 156564866 156564866 C G GPATCH4 3'Flank 0.21 TCGA-ZF-AA53-01 1 203698787 203698787 G T ATP2B4 Intron 0.18 TCGA-ZF-AA53-01 1 225598004 225598004 G A LBR Missense_Mutation p.L435F 0.22 tolerated(0.08) probably_damaging(1) TCGA-ZF-AA53-01 1 22817119 22817119 G C ZBTB40 Missense_Mutation p.K226N 0.07 tolerated(0.09) benign(0.064) TCGA-ZF-AA53-01 1 231678318 231678318 G T TSNAX Missense_Mutation p.G110W 0.06 deleterious(0) probably_damaging(0.97) TCGA-ZF-AA53-01 1 232144702 232144702 C T DISC1 Silent p.S738S 0.21 TCGA-ZF-AA53-01 1 234455893 234455893 G C SLC35F3 Silent p.L399L 0.12 TCGA-ZF-AA53-01 1 237875071 237875071 C T RYR2 Silent p.F3419F 0.15 TCGA-ZF-AA53-01 1 243349594 243349594 G C CEP170 Silent p.V413V 0.05 TCGA-ZF-AA53-01 1 248224042 248224042 C G OR2L3 Nonsense_Mutation p.S20* 0.08 TCGA-ZF-AA53-01 1 3753101 3753101 C T CEP104 Silent p.L425L 0.11 TCGA-ZF-AA53-01 1 45228214 45228214 C G KIF2C Intron 0.17 TCGA-ZF-AA53-01 1 62971480 62971480 G C DOCK7 Missense_Mutation p.S1464C 0.07 tolerated(0.21) possibly_damaging(0.879) TCGA-ZF-AA53-01 1 74808781 74808781 G A FPGT-TNNI3K Missense_Mutation p.E398K 0.09 tolerated(0.05) benign(0.011) TCGA-ZF-AA53-01 1 8395549 8395549 C T SLC45A1 Missense_Mutation p.S499F 0.30 deleterious(0.01) benign(0.396) TCGA-ZF-AA53-01 1 909241 909241 G A PLEKHN1 Missense_Mutation p.G488E 0.50 deleterious(0) probably_damaging(0.934) TCGA-ZF-AA53-01 1 93649584 93649584 G C CCDC18 Missense_Mutation p.E116Q 0.05 tolerated(0.21) probably_damaging(0.953) TCGA-ZF-AA53-01 20 17606166 17606166 C T RRBP1 Silent p.V582V 0.06 TCGA-ZF-AA53-01 20 34242192 34242192 G C RBM12 Silent p.L351L 0.10 TCGA-ZF-AA53-01 20 3838310 3838310 C T MAVS Missense_Mutation p.S49L 0.07 tolerated(0.74) benign(0) TCGA-ZF-AA53-01 20 46271059 46271059 C T NCOA3 Silent p.L1061L 0.22 TCGA-ZF-AA53-01 22 31091071 31091071 G C OSBP2 Missense_Mutation p.E59Q 0.14 tolerated_low_confidence(0.35) benign(0.001) TCGA-ZF-AA53-01 22 31091452 31091452 G A OSBP2 Missense_Mutation p.E186K 0.05 tolerated(1) benign(0.002) TCGA-ZF-AA53-01 22 32217540 32217540 G A DEPDC5 Silent p.A641A 0.19 TCGA-ZF-AA53-01 22 37334018 37334018 C G CSF2RB Nonsense_Mutation p.S723* 0.26 TCGA-ZF-AA53-01 22 38469021 38469021 G C PICK1 Silent p.L235L 0.06 TCGA-ZF-AA53-01 22 44584995 44584995 G A PARVG Silent p.Q83Q 0.22 TCGA-ZF-AA53-01 22 44585037 44585037 G C PARVG Silent p.L97L 0.15 TCGA-ZF-AA53-01 2 101624340 101624340 G A TBC1D8 Silent p.L1122L 0.09 TCGA-ZF-AA53-01 2 106498407 106498407 G C NCK2 Missense_Mutation p.E284Q 0.19 tolerated(0.27) benign(0.205) TCGA-ZF-AA53-01 2 108881431 108881431 G A SULT1C3 Missense_Mutation p.D258N 0.06 tolerated(0.21) benign(0.021) TCGA-ZF-AA53-01 2 111406862 111406862 C G BUB1 Missense_Mutation p.E766Q 0.07 deleterious(0.03) probably_damaging(0.993) TCGA-ZF-AA53-01 2 130948263 130948263 G C MZT2B 3'UTR 0.23 TCGA-ZF-AA53-01 2 165551329 165551329 G C COBLL1 Nonsense_Mutation p.S896* 0.06 TCGA-ZF-AA53-01 2 170007520 170007520 C G LRP2 Missense_Mutation p.D4160H 0.12 probably_damaging(1) TCGA-ZF-AA53-01 2 170371380 170371380 G A KLHL41 Missense_Mutation p.E429K 0.12 deleterious(0.01) possibly_damaging(0.862) TCGA-ZF-AA53-01 2 175324661 175324661 C G GPR155 Missense_Mutation p.E572D 0.09 tolerated(0.55) benign(0.001) TCGA-ZF-AA53-01 2 179429611 179429611 G C TTN Nonsense_Mutation p.S27083* 0.07 TCGA-ZF-AA53-01 2 202173901 202173901 C T ALS2CR12 Missense_Mutation p.E250K 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-ZF-AA53-01 2 209182626 209182626 C G PIKFYVE Silent p.V681V 0.15 TCGA-ZF-AA53-01 2 219129801 219129801 G A AAMP Missense_Mutation p.R391C 0.15 deleterious(0.02) benign(0.428) TCGA-ZF-AA53-01 2 25472552 25472552 G A DNMT3A Intron 0.16 TCGA-ZF-AA53-01 2 29038982 29038982 G A SPDYA Silent p.L34L 0.07 TCGA-ZF-AA53-01 2 37247008 37247008 G C HEATR5B Missense_Mutation p.L1350V 0.10 deleterious(0.02) probably_damaging(0.919) TCGA-ZF-AA53-01 2 43458261 43458261 C T THADA Silent p.V1896V 0.24 TCGA-ZF-AA53-01 2 96047364 96047364 C T KCNIP3 Silent p.S156S 0.19 TCGA-ZF-AA53-01 3 121416264 121416264 C G GOLGB1 Missense_Mutation p.E1036Q 0.16 benign(0.087) TCGA-ZF-AA53-01 3 121417764 121417764 C G GOLGB1 Missense_Mutation p.D536H 0.20 possibly_damaging(0.834) TCGA-ZF-AA53-01 3 122512482 122512482 C T HSPBAP1 Missense_Mutation p.G16R 0.09 tolerated_low_confidence(0.67) benign(0.002) TCGA-ZF-AA53-01 3 123689034 123689034 C G ROPN1 Missense_Mutation p.E143Q 0.17 deleterious(0.03) benign(0.148) TCGA-ZF-AA53-01 3 127779431 127779431 C G SEC61A1 Silent p.L181L 0.15 TCGA-ZF-AA53-01 3 142681684 142681684 G C PAQR9 Silent p.G165G 0.20 TCGA-ZF-AA53-01 3 170009715 170009715 G C PRKCI Missense_Mutation p.R426T 0.16 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA53-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-ZF-AA53-01 3 184025251 184025251 C T PSMD2 Missense_Mutation p.S714F 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA53-01 3 188202382 188202382 G C LPP Missense_Mutation p.D66H 0.22 tolerated(0.16) possibly_damaging(0.837) TCGA-ZF-AA53-01 3 189688676 189688676 G C LEPREL1 Missense_Mutation p.L608V 0.14 deleterious(0.04) benign(0.091) TCGA-ZF-AA53-01 3 193332698 193332698 G A OPA1 Silent p.L73L 0.19 TCGA-ZF-AA53-01 3 193332766 193332766 G C OPA1 Missense_Mutation p.R96T 0.16 tolerated(0.17) possibly_damaging(0.459) TCGA-ZF-AA53-01 3 193380719 193380719 G A OPA1 Missense_Mutation p.E859K 0.11 tolerated(0.08) benign(0.024) TCGA-ZF-AA53-01 3 193380726 193380726 G A OPA1 Missense_Mutation p.R861Q 0.14 tolerated(0.4) benign(0.002) TCGA-ZF-AA53-01 3 196230038 196230038 G C RNF168 Missense_Mutation p.L3V 0.20 tolerated(0.88) benign(0) TCGA-ZF-AA53-01 3 33853577 33853577 A T PDCD6IP Missense_Mutation p.I75F 0.27 deleterious(0) benign(0.37) TCGA-ZF-AA53-01 3 44867658 44867658 G A KIF15 Missense_Mutation p.E893K 0.09 deleterious(0.04) benign(0.341) TCGA-ZF-AA53-01 3 47312862 47312862 G T KIF9 Silent p.L152L 0.08 TCGA-ZF-AA53-01 3 50151488 50151488 G C RBM5 Missense_Mutation p.E575Q 0.09 deleterious(0.04) probably_damaging(0.954) TCGA-ZF-AA53-01 3 50151524 50151524 G C RBM5 Missense_Mutation p.E587Q 0.10 deleterious(0) benign(0.342) TCGA-ZF-AA53-01 3 50152917 50152917 G C RBM5 Missense_Mutation p.E632D 0.08 tolerated(0.32) benign(0.186) TCGA-ZF-AA53-01 3 50229198 50229198 G A GNAT1 Missense_Mutation p.E14K 0.27 tolerated(0.21) probably_damaging(0.992) TCGA-ZF-AA53-01 3 51864772 51864772 C A IQCF3 Silent p.I140I 0.09 TCGA-ZF-AA53-01 3 68593678 68593678 G A FAM19A1 3'UTR 0.33 TCGA-ZF-AA53-01 4 102015057 102015057 C G PPP3CA Missense_Mutation p.E220Q 0.10 deleterious(0) probably_damaging(0.951) TCGA-ZF-AA53-01 4 152594042 152594042 C G PET112 Missense_Mutation p.E473Q 0.24 tolerated(0.7) benign(0.034) TCGA-ZF-AA53-01 4 1701765 1701765 C T SLBP Missense_Mutation p.G105E 0.15 deleterious(0.02) possibly_damaging(0.885) TCGA-ZF-AA53-01 4 170322822 170322822 C T NEK1 Silent p.L1188L 0.08 TCGA-ZF-AA53-01 4 177052851 177052851 G A WDR17 Missense_Mutation p.D378N 0.37 tolerated(0.32) benign(0.443) TCGA-ZF-AA53-01 4 183713924 183713924 G C TENM3 Silent p.V2033V 0.10 TCGA-ZF-AA53-01 4 187539602 187539602 G A FAT1 Missense_Mutation p.S2713L 0.32 benign(0.426) TCGA-ZF-AA53-01 4 26640420 26640420 C G TBC1D19 Missense_Mutation p.L133V 0.11 tolerated(0.21) benign(0.015) TCGA-ZF-AA53-01 4 42416668 42416668 C G ATP8A1 Missense_Mutation p.E1125Q 0.17 tolerated(0.97) benign(0.084) TCGA-ZF-AA53-01 4 68687977 68687977 C T TMPRSS11D 3'UTR 0.25 TCGA-ZF-AA53-01 4 71396939 71396939 G A AMTN Missense_Mutation p.D181N 0.12 tolerated_low_confidence(0.17) benign(0.376) TCGA-ZF-AA53-01 4 83417331 83417331 G C TMEM150C Missense_Mutation p.L85V 0.22 deleterious(0.02) possibly_damaging(0.86) TCGA-ZF-AA53-01 4 89589073 89589073 C T HERC3 Missense_Mutation p.P492S 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-ZF-AA53-01 5 137278830 137278830 C G FAM13B Missense_Mutation p.E784Q 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA53-01 5 137756483 137756483 G A KDM3B Silent p.P1268P 0.14 TCGA-ZF-AA53-01 5 139193840 139193840 C G PSD2 Missense_Mutation p.L303V 0.14 deleterious(0.04) possibly_damaging(0.787) TCGA-ZF-AA53-01 5 140718984 140718984 G A PCDHGA2 Missense_Mutation p.G149E 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-ZF-AA53-01 5 148929709 148929709 C - CSNK1A1 Frame_Shift_Del p.R53Sfs*36 0.17 TCGA-ZF-AA53-01 5 149497414 149497414 C G PDGFRB Splice_Site p.X969_splice 0.33 TCGA-ZF-AA53-01 5 153857471 153857471 G C HAND1 Missense_Mutation p.S33W 0.06 deleterious(0) possibly_damaging(0.761) TCGA-ZF-AA53-01 5 176011562 176011562 G T CDHR2 Silent p.L760L 0.10 TCGA-ZF-AA53-01 5 176335533 176335533 C T UIMC1 Silent p.K613K 0.06 TCGA-ZF-AA53-01 5 38982013 38982013 G A RICTOR Missense_Mutation p.H237Y 0.24 deleterious(0) probably_damaging(0.925) TCGA-ZF-AA53-01 5 38982074 38982074 G A RICTOR Silent p.I216I 0.25 TCGA-ZF-AA53-01 5 55237584 55237584 C T IL6ST Missense_Mutation p.E695K 0.22 deleterious(0.04) possibly_damaging(0.742) TCGA-ZF-AA53-01 5 79030481 79030481 C T CMYA5 Missense_Mutation p.L1965F 0.08 possibly_damaging(0.5) TCGA-ZF-AA53-01 6 105821265 105821265 G A PREP Nonsense_Mutation p.Q192* 0.15 TCGA-ZF-AA53-01 6 119338031 119338031 C A FAM184A Nonsense_Mutation p.E471* 0.07 TCGA-ZF-AA53-01 6 129618905 129618905 G C LAMA2 Missense_Mutation p.D978H 0.07 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA53-01 6 130460877 130460877 G A L3MBTL3 Silent p.K774K 0.31 TCGA-ZF-AA53-01 6 148852690 148852690 C G SASH1 Missense_Mutation p.S486C 0.14 tolerated(0.11) benign(0.134) TCGA-ZF-AA53-01 6 29572649 29572649 G C GABBR1 Silent p.L852L 0.29 TCGA-ZF-AA53-01 6 30573926 30573926 G C PPP1R10 Silent p.L243L 0.21 TCGA-ZF-AA53-01 6 30632589 30632589 G T DHX16 Missense_Mutation p.L436I 0.15 deleterious(0) unknown(0) TCGA-ZF-AA53-01 6 32827179 32827180 - A PSMB9 Intron 0.10 TCGA-ZF-AA53-01 6 36041852 36041852 G C MAPK14 Silent p.V158V 0.06 TCGA-ZF-AA53-01 6 36759830 36759830 C T CPNE5 Missense_Mutation p.E170K 0.07 deleterious(0) possibly_damaging(0.563) TCGA-ZF-AA53-01 6 43592647 43592647 G A GTPBP2 Silent p.L286L 0.08 TCGA-ZF-AA53-01 6 57017102 57017102 C T ZNF451 Missense_Mutation p.R946C 0.16 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA53-01 6 7566637 7566637 G C DSP Missense_Mutation p.E323Q 0.16 probably_damaging(0.987) TCGA-ZF-AA53-01 6 84859386 84859386 G C KIAA1009 Silent p.L1222L 0.14 TCGA-ZF-AA53-01 7 102113165 102113165 G A LRWD1 Missense_Mutation p.E573K 0.10 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA53-01 7 128582146 128582146 C T IRF5 Missense_Mutation p.S4F 0.06 deleterious_low_confidence(0) possibly_damaging(0.532) TCGA-ZF-AA53-01 7 140389406 140389406 G C ADCK2 Missense_Mutation p.V523L 0.08 deleterious(0) possibly_damaging(0.606) TCGA-ZF-AA53-01 7 38370481 38370481 C G TRGV8 5'UTR 0.12 TCGA-ZF-AA53-01 7 73474287 73474287 G C ELN Missense_Mutation p.G496R 0.15 unknown(0) TCGA-ZF-AA53-01 7 81594963 81594963 G C CACNA2D1 Missense_Mutation p.L841V 0.22 tolerated(0.1) possibly_damaging(0.848) TCGA-ZF-AA53-01 7 91735054 91735054 G A AKAP9 Missense_Mutation p.R3798K 0.14 benign(0.034) TCGA-ZF-AA53-01 7 94993187 94993187 G T PON3 Nonsense_Mutation p.S228* 0.18 TCGA-ZF-AA53-01 7 99669396 99669396 G A ZNF3 Silent p.F237F 0.12 TCGA-ZF-AA53-01 8 107751730 107751730 G A OXR1 Silent p.V695V 0.16 TCGA-ZF-AA53-01 8 22887148 22887148 C T TNFRSF10B Missense_Mutation p.E151K 0.10 deleterious(0) probably_damaging(0.926) TCGA-ZF-AA53-01 8 75756242 75756242 G A PI15 Silent p.S100S 0.09 TCGA-ZF-AA53-01 8 95502263 95502263 G A KIAA1429 Nonsense_Mutation p.Q1730* 0.29 TCGA-ZF-AA53-01 9 127644206 127644206 C T GOLGA1 Missense_Mutation p.E665K 0.24 tolerated(0.08) possibly_damaging(0.504) TCGA-ZF-AA53-01 9 130829398 130829398 C G NAIF1 5'UTR 0.43 TCGA-ZF-AA53-01 9 135797300 135797300 C - TSC1 Frame_Shift_Del p.R190Pfs*20 0.30 TCGA-ZF-AA53-01 9 137328351 137328351 C T RXRA Missense_Mutation p.S427F 0.31 deleterious(0) probably_damaging(1) TCGA-ZF-AA53-01 9 19516073 19516073 C T SLC24A2 3'UTR 0.35 TCGA-ZF-AA53-01 9 38586183 38586183 C T ANKRD18A Silent p.Q748Q 0.31 TCGA-ZF-AA53-01 9 38586257 38586257 C G ANKRD18A Missense_Mutation p.E724Q 0.33 tolerated(0.44) possibly_damaging(0.727) TCGA-ZF-AA53-01 9 79117809 79117809 C T GCNT1 Missense_Mutation p.S171F 0.09 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA53-01 X 107415703 107415703 C G COL4A6 Silent p.L1067L 0.06 TCGA-ZF-AA53-01 X 123224549 123224570 TGAGGATAGCTTCATGAGTGTT - STAG2 Frame_Shift_Del p.E1135Ifs*18 0.27 TCGA-ZF-AA53-01 X 135957439 135957439 C G RBMX Missense_Mutation p.D254H 0.45 deleterious(0.01) possibly_damaging(0.778) TCGA-ZF-AA53-01 X 152612276 152612276 G A ZNF275 Splice_Site p.X45_splice 0.20 TCGA-ZF-AA53-01 X 15663091 15663091 C T TMEM27 Missense_Mutation p.D89N 0.08 tolerated(0.13) probably_damaging(0.99) TCGA-ZF-AA53-01 X 17024395 17024395 T C REPS2 Missense_Mutation p.F109L 0.16 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA53-01 X 24608263 24608263 G C PCYT1B Missense_Mutation p.F121L 0.12 tolerated(0.36) benign(0.001) TCGA-ZF-AA53-01 X 44948987 44948987 G A KDM6A Splice_Site p.X1183_splice 0.31 TCGA-ZF-AA53-01 X 47035961 47035962 - A RBM10 Frame_Shift_Ins p.N214Kfs*2 0.31 TCGA-ZF-AA53-01 X 65486319 65486319 G C HEPH Missense_Mutation p.K1148N 0.14 tolerated(0.44) benign(0.001) TCGA-ZF-AA53-01 X 82764212 82764212 G C POU3F4 Missense_Mutation p.E294Q 0.42 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA53-01 X 92928050 92928050 C T NAP1L3 Missense_Mutation p.R85K 0.41 tolerated(0.16) benign(0.001) TCGA-ZF-AA54-01 10 105152162 105152162 T C USMG5 Missense_Mutation p.Y18C 0.33 deleterious(0.02) probably_damaging(0.957) TCGA-ZF-AA54-01 10 135195129 135195129 C T PAOX Silent p.F278F 0.26 TCGA-ZF-AA54-01 10 61958123 61958123 C G ANK3 Missense_Mutation p.G555A 0.38 possibly_damaging(0.821) TCGA-ZF-AA54-01 10 70507134 70507134 C G CCAR1 Missense_Mutation p.Q213E 0.14 tolerated(0.27) benign(0.094) TCGA-ZF-AA54-01 10 70507264 70507264 C G CCAR1 Missense_Mutation p.S256C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-ZF-AA54-01 10 70513761 70513761 G A CCAR1 Missense_Mutation p.R424K 0.17 tolerated(1) benign(0.006) TCGA-ZF-AA54-01 10 7860702 7860702 G C TAF3 Missense_Mutation p.L10F 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-ZF-AA54-01 10 79737075 79737075 C G POLR3A 3'UTR 0.46 TCGA-ZF-AA54-01 10 89280833 89280833 G C MINPP1 Missense_Mutation p.R325T 0.16 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA54-01 11 108593979 108593979 A C DDX10 Missense_Mutation p.E585D 0.22 tolerated(0.25) benign(0.002) TCGA-ZF-AA54-01 11 121424663 121424663 C T SORL1 Silent p.L762L 0.43 TCGA-ZF-AA54-01 11 2411684 2411684 C A CD81 Missense_Mutation p.H37N 0.13 deleterious(0) probably_damaging(0.92) TCGA-ZF-AA54-01 11 45928134 45928134 C T C11orf94 Missense_Mutation p.D95N 0.13 tolerated(0.09) benign(0.004) TCGA-ZF-AA54-01 11 47463211 47463211 C T RAPSN Silent p.A288A 0.32 TCGA-ZF-AA54-01 11 60706999 60706999 G C SLC15A3 Missense_Mutation p.P463R 0.29 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 11 63978862 63978862 C T FERMT3 Silent p.L210L 0.30 TCGA-ZF-AA54-01 11 7981335 7981335 C G NLRP10 Missense_Mutation p.L608F 0.12 tolerated(0.12) benign(0.024) TCGA-ZF-AA54-01 12 1025417 1025417 C T RAD52 Intron 0.09 TCGA-ZF-AA54-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.55 deleterious(0) benign(0.361) TCGA-ZF-AA54-01 12 29904709 29904709 C T TMTC1 Silent p.Q276Q 0.11 TCGA-ZF-AA54-01 12 49433217 49433217 C T KMT2D Splice_Site p.X2743_splice 0.37 TCGA-ZF-AA54-01 12 50048043 50048043 C A FMNL3 Nonsense_Mutation p.E335* 0.54 TCGA-ZF-AA54-01 12 6979577 6979577 C T TPI1 3'UTR 0.28 TCGA-ZF-AA54-01 12 81528644 81528644 A G ACSS3 Missense_Mutation p.D169G 0.48 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 13 101735205 101735205 A G NALCN Silent p.P1240P 0.13 TCGA-ZF-AA54-01 13 24465779 24465779 T - C1QTNF9B Frame_Shift_Del p.D218Mfs*54 0.09 TCGA-ZF-AA54-01 13 24895555 24895559 AGATA GATG AL359736.1 Frame_Shift_Del p.I3Tfs*11 0.12 TCGA-ZF-AA54-01 13 31498637 31498637 G A MEDAG 3'UTR 0.25 TCGA-ZF-AA54-01 13 32729731 32729731 G A FRY Missense_Mutation p.G528E 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 13 36909299 36909299 C T SPG20 Silent p.L223L 0.20 TCGA-ZF-AA54-01 13 42877738 42877738 C G AKAP11 Missense_Mutation p.S1619C 0.24 tolerated(0.08) probably_damaging(0.919) TCGA-ZF-AA54-01 13 77644815 77644815 A G MYCBP2 Missense_Mutation p.M3914T 0.20 possibly_damaging(0.822) TCGA-ZF-AA54-01 14 106691850 106691850 C T IGHV3-21 Silent p.Q58Q 0.41 TCGA-ZF-AA54-01 14 33014697 33014697 G A AKAP6 Missense_Mutation p.D280N 0.19 tolerated(0.09) possibly_damaging(0.735) TCGA-ZF-AA54-01 14 33292516 33292516 A T AKAP6 Missense_Mutation p.S1833C 0.45 deleterious(0) possibly_damaging(0.759) TCGA-ZF-AA54-01 14 51225251 51225251 G C NIN Missense_Mutation p.L833V 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-ZF-AA54-01 14 59112899 59112899 C G DACT1 Missense_Mutation p.P520A 0.11 tolerated(0.79) benign(0.001) TCGA-ZF-AA54-01 14 64694316 64694316 G C SYNE2 3'Flank 0.20 TCGA-ZF-AA54-01 14 81862414 81862414 G C STON2 Missense_Mutation p.S66W 0.25 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-ZF-AA54-01 14 95080900 95080900 G C SERPINA3 Missense_Mutation p.R41P 0.39 tolerated(0.16) benign(0.346) TCGA-ZF-AA54-01 15 22332607 22332607 C G RP11-69H14.6 RNA 0.07 TCGA-ZF-AA54-01 15 43571899 43571899 C T TGM7 Silent p.Q534Q 0.41 TCGA-ZF-AA54-01 15 45470465 45470465 G C SHF Missense_Mutation p.Q115E 0.40 tolerated(0.27) possibly_damaging(0.759) TCGA-ZF-AA54-01 15 57976638 57976638 G C GCOM1 Intron 0.15 TCGA-ZF-AA54-01 15 58938322 58938322 G C ADAM10 Missense_Mutation p.Q223E 0.12 tolerated(0.3) benign(0.053) TCGA-ZF-AA54-01 15 58938397 58938397 G C ADAM10 Missense_Mutation p.Q198E 0.12 tolerated(1) benign(0) TCGA-ZF-AA54-01 15 62237952 62237952 G A VPS13C Nonsense_Mutation p.Q1704* 0.32 TCGA-ZF-AA54-01 15 72313310 72313310 C G MYO9A Missense_Mutation p.E349D 0.36 deleterious(0.01) benign(0.141) TCGA-ZF-AA54-01 15 74476234 74476234 C T STRA6 Missense_Mutation p.M460I 0.33 deleterious(0.04) probably_damaging(0.99) TCGA-ZF-AA54-01 15 77473564 77473564 C G PEAK1 Missense_Mutation p.E235D 0.24 tolerated(0.1) benign(0.055) TCGA-ZF-AA54-01 15 78403615 78403615 C A CIB2 Silent p.L30L 0.18 TCGA-ZF-AA54-01 15 86312223 86312223 C G KLHL25 Missense_Mutation p.K273N 0.34 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA54-01 15 91298064 91298064 C G BLM Missense_Mutation p.S328C 0.24 tolerated(0.2) benign(0.004) TCGA-ZF-AA54-01 15 94942281 94942281 T C MCTP2 Missense_Mutation p.I627T 0.39 deleterious(0) possibly_damaging(0.741) TCGA-ZF-AA54-01 16 22291571 22291571 A T EEF2K Missense_Mutation p.T648S 0.40 tolerated(0.22) benign(0.004) TCGA-ZF-AA54-01 16 28996665 28996665 C T LAT Intron 0.36 TCGA-ZF-AA54-01 16 30096451 30096451 C G PPP4C 3'UTR 0.35 TCGA-ZF-AA54-01 16 4401294 4401294 C T PAM16 5'UTR 0.33 TCGA-ZF-AA54-01 16 47294562 47294562 G T ITFG1 Missense_Mutation p.A372E 0.14 tolerated(0.21) possibly_damaging(0.765) TCGA-ZF-AA54-01 16 53720391 53720391 C T RPGRIP1L Missense_Mutation p.E244K 0.31 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA54-01 16 53720397 53720397 C T RPGRIP1L Missense_Mutation p.E242K 0.31 deleterious(0.02) possibly_damaging(0.596) TCGA-ZF-AA54-01 16 53720413 53720413 C T RPGRIP1L Silent p.L236L 0.36 TCGA-ZF-AA54-01 16 53721793 53721793 C T RPGRIP1L Missense_Mutation p.R205K 0.47 tolerated(0.1) benign(0.014) TCGA-ZF-AA54-01 16 53726022 53726022 C G RPGRIP1L Missense_Mutation p.R162T 0.41 deleterious(0) benign(0.397) TCGA-ZF-AA54-01 16 53726156 53726156 C G RPGRIP1L Missense_Mutation p.E117D 0.30 tolerated(0.16) benign(0.062) TCGA-ZF-AA54-01 16 53726174 53726174 C T RPGRIP1L Missense_Mutation p.M111I 0.25 tolerated(0.06) benign(0.027) TCGA-ZF-AA54-01 16 53726179 53726179 C A RPGRIP1L Nonsense_Mutation p.E110* 0.25 TCGA-ZF-AA54-01 16 53726199 53726199 C T RPGRIP1L Missense_Mutation p.G103E 0.25 deleterious(0.01) probably_damaging(0.943) TCGA-ZF-AA54-01 16 53726240 53726240 C T RPGRIP1L Silent p.K89K 0.30 TCGA-ZF-AA54-01 16 53730076 53730076 C T RPGRIP1L Missense_Mutation p.D73N 0.36 deleterious(0) possibly_damaging(0.732) TCGA-ZF-AA54-01 16 89348528 89348528 C G ANKRD11 Missense_Mutation p.E1474D 0.10 benign(0.022) TCGA-ZF-AA54-01 17 15638732 15638732 G C TBC1D26 Missense_Mutation p.E24Q 0.51 tolerated(0.06) possibly_damaging(0.857) TCGA-ZF-AA54-01 17 3343479 3343479 C G SPATA22 Missense_Mutation p.E352Q 0.47 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA54-01 17 3343612 3343612 C T SPATA22 Silent p.L307L 0.42 TCGA-ZF-AA54-01 17 40837369 40837369 G A CNTNAP1 Missense_Mutation p.E216K 0.45 deleterious(0) possibly_damaging(0.558) TCGA-ZF-AA54-01 17 40947767 40947767 C G WNK4 Silent p.L1049L 0.46 TCGA-ZF-AA54-01 17 5338204 5338204 C A C1QBP Nonsense_Mutation p.E156* 0.42 TCGA-ZF-AA54-01 17 57047020 57047020 C T PPM1E Missense_Mutation p.P302S 0.51 deleterious(0) probably_damaging(0.968) TCGA-ZF-AA54-01 17 67132208 67132208 A G ABCA6 Intron 0.12 TCGA-ZF-AA54-01 17 7107013 7107013 G A DLG4 Silent p.L154L 0.41 TCGA-ZF-AA54-01 17 73812972 73812972 G A UNK Silent p.P361P 0.14 TCGA-ZF-AA54-01 17 7577079 7577079 C A TP53 Nonsense_Mutation p.E287* 0.44 TCGA-ZF-AA54-01 18 14542996 14542996 G A POTEC Silent p.D50D 0.07 TCGA-ZF-AA54-01 18 43671710 43671710 G A ATP5A1 Missense_Mutation p.R83C 0.35 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-ZF-AA54-01 18 44559758 44559758 G A TCEB3B Silent p.I626I 0.15 TCGA-ZF-AA54-01 18 54547322 54547322 G A WDR7 Missense_Mutation p.R1151Q 0.23 deleterious(0.05) probably_damaging(0.986) TCGA-ZF-AA54-01 18 59483116 59483116 G C RNF152 Missense_Mutation p.S194C 0.05 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-ZF-AA54-01 18 64176314 64176314 G C CDH19 Missense_Mutation p.C582W 0.17 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA54-01 18 65178495 65178495 C A DSEL Missense_Mutation p.L1127F 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA54-01 18 7016489 7016489 C A LAMA1 Splice_Site p.X997_splice 0.36 TCGA-ZF-AA54-01 19 10570332 10570332 C T PDE4A Missense_Mutation p.T421M 0.32 tolerated(0.06) probably_damaging(0.998) TCGA-ZF-AA54-01 19 10753635 10753635 A G SLC44A2 Intron 0.22 TCGA-ZF-AA54-01 19 18322677 18322677 C T PDE4C Silent p.T561T 0.35 TCGA-ZF-AA54-01 19 18474200 18474200 G C PGPEP1 Splice_Site p.X146_splice 0.31 TCGA-ZF-AA54-01 19 43373185 43373185 C T PSG1 Silent p.P237P 0.20 TCGA-ZF-AA54-01 19 44223240 44223240 C T IRGC Missense_Mutation p.T177M 0.40 tolerated(0.05) possibly_damaging(0.677) TCGA-ZF-AA54-01 19 56171957 56171957 C T U2AF2 Silent p.I102I 0.31 TCGA-ZF-AA54-01 19 56392885 56392885 G C NLRP4 Missense_Mutation p.E973Q 0.32 tolerated(0.1) possibly_damaging(0.737) TCGA-ZF-AA54-01 19 56407404 56407404 C G NLRP13 Silent p.L1013L 0.29 TCGA-ZF-AA54-01 1 10093670 10093670 C T UBE4B 5'UTR 0.09 TCGA-ZF-AA54-01 1 150054007 150054007 G C VPS45 Missense_Mutation p.K288N 0.19 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA54-01 1 151266916 151266916 G A PI4KB Missense_Mutation p.S718L 0.26 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 1 151504881 151504881 G A CGN Missense_Mutation p.E859K 0.35 deleterious(0.04) possibly_damaging(0.724) TCGA-ZF-AA54-01 1 151504886 151504886 G T CGN Missense_Mutation p.K860N 0.35 tolerated(0.17) benign(0.004) TCGA-ZF-AA54-01 1 151504962 151504962 G T CGN Nonsense_Mutation p.E886* 0.30 TCGA-ZF-AA54-01 1 151505004 151505004 G A CGN Missense_Mutation p.E900K 0.37 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA54-01 1 154574977 154574977 G C ADAR Silent p.L47L 0.44 TCGA-ZF-AA54-01 1 155582297 155582297 C T MSTO1 Missense_Mutation p.S301F 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA54-01 1 155734850 155734850 C T GON4L Missense_Mutation p.E1472K 0.35 deleterious(0) possibly_damaging(0.801) TCGA-ZF-AA54-01 1 161039341 161039341 T C ARHGAP30 Missense_Mutation p.H25R 0.12 deleterious(0.01) benign(0.097) TCGA-ZF-AA54-01 1 167805768 167805768 T G ADCY10 Missense_Mutation p.I1030L 0.42 tolerated(0.18) benign(0.04) TCGA-ZF-AA54-01 1 169586336 169586336 C A SELP Missense_Mutation p.K137N 0.12 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA54-01 1 169586369 169586369 C G SELP Missense_Mutation p.R126S 0.11 deleterious(0.01) benign(0.03) TCGA-ZF-AA54-01 1 178427370 178427370 G C RASAL2 Missense_Mutation p.Q981H 0.35 tolerated(0.24) benign(0.014) TCGA-ZF-AA54-01 1 179033178 179033178 C G FAM20B Missense_Mutation p.L231V 0.31 tolerated(0.12) possibly_damaging(0.733) TCGA-ZF-AA54-01 1 182368845 182368845 G T TEDDM1 Nonsense_Mutation p.S259* 0.34 TCGA-ZF-AA54-01 1 183498138 183498138 C T SMG7 Missense_Mutation p.S223F 0.31 deleterious(0.03) probably_damaging(0.981) TCGA-ZF-AA54-01 1 1848287 1848287 G A CALML6 Missense_Mutation p.R117H 0.43 deleterious(0.04) possibly_damaging(0.778) TCGA-ZF-AA54-01 1 209805953 209805953 G A LAMB3 Missense_Mutation p.S266F 0.19 tolerated(0.28) benign(0.285) TCGA-ZF-AA54-01 1 209806433 209806433 G A LAMB3 Nonsense_Mutation p.Q204* 0.16 TCGA-ZF-AA54-01 1 215960113 215960113 C T USH2A Missense_Mutation p.R3429K 0.15 benign(0.003) TCGA-ZF-AA54-01 1 215963624 215963624 C T USH2A Missense_Mutation p.G3320D 0.13 benign(0.373) TCGA-ZF-AA54-01 1 220311374 220311374 G A IARS2 Missense_Mutation p.D722N 0.28 tolerated(0.57) benign(0.008) TCGA-ZF-AA54-01 1 222713431 222713431 C G HHIPL2 Missense_Mutation p.L457F 0.16 deleterious(0.04) benign(0.2) TCGA-ZF-AA54-01 1 224553636 224553636 C G CNIH4 Nonsense_Mutation p.S65* 0.29 TCGA-ZF-AA54-01 1 22828057 22828057 G A ZBTB40 Missense_Mutation p.E302K 0.33 tolerated(0.17) benign(0.292) TCGA-ZF-AA54-01 1 236734889 236734889 C T HEATR1 Missense_Mutation p.D1269N 0.27 tolerated(0.14) benign(0.08) TCGA-ZF-AA54-01 1 236767271 236767271 T C HEATR1 Missense_Mutation p.D42G 0.46 deleterious(0.01) benign(0.286) TCGA-ZF-AA54-01 1 24121123 24121123 C T LYPLA2 Intron 0.42 TCGA-ZF-AA54-01 1 247063713 247063713 C G AHCTF1 Missense_Mutation p.Q401H 0.28 deleterious(0) probably_damaging(0.987) TCGA-ZF-AA54-01 1 247464421 247464421 G A ZNF496 Silent p.S388S 0.18 TCGA-ZF-AA54-01 1 248525633 248525633 T C OR2T4 Silent p.L251L 0.37 TCGA-ZF-AA54-01 1 39824812 39824812 G A MACF1 Splice_Site p.X1979_splice 0.15 TCGA-ZF-AA54-01 1 52823450 52823450 C T CC2D1B Intron 0.29 TCGA-ZF-AA54-01 1 6279381 6279381 G A RNF207 Missense_Mutation p.E607K 0.38 deleterious_low_confidence(0.02) benign(0.169) TCGA-ZF-AA54-01 1 6279392 6279392 G A RNF207 Silent p.L610L 0.48 TCGA-ZF-AA54-01 1 89522718 89522718 G C GBP1 Nonsense_Mutation p.S325* 0.34 TCGA-ZF-AA54-01 1 90180340 90180340 A - LRRC8C Frame_Shift_Del p.N739Tfs*19 0.12 TCGA-ZF-AA54-01 20 2819393 2819393 C G PCED1A Splice_Site p.X148_splice 0.32 TCGA-ZF-AA54-01 20 33137790 33137790 G A MAP1LC3A Missense_Mutation p.M3I 0.33 tolerated_low_confidence(0.34) benign(0) TCGA-ZF-AA54-01 20 33576017 33576017 C A MYH7B Missense_Mutation p.F555L 0.29 possibly_damaging(0.815) TCGA-ZF-AA54-01 20 33583163 33583163 G C MYH7B Missense_Mutation p.E951Q 0.20 probably_damaging(0.999) TCGA-ZF-AA54-01 20 3928904 3928904 C G RNF24 Missense_Mutation p.E77Q 0.32 deleterious(0.05) probably_damaging(0.986) TCGA-ZF-AA54-01 20 40080468 40080468 G A CHD6 Missense_Mutation p.S1174L 0.27 tolerated(0.23) benign(0.196) TCGA-ZF-AA54-01 20 60419832 60419832 A G CDH4 Missense_Mutation p.M229V 0.12 deleterious(0.04) benign(0.019) TCGA-ZF-AA54-01 22 36682784 36682784 C T MYH9 Missense_Mutation p.E1681K 0.58 possibly_damaging(0.713) TCGA-ZF-AA54-01 22 38243725 38243725 G A ANKRD54 5'Flank 0.47 TCGA-ZF-AA54-01 22 39066825 39066825 G C CBY1 Intron 0.65 TCGA-ZF-AA54-01 2 103095336 103095336 G C SLC9A4 Missense_Mutation p.E99Q 0.50 deleterious(0) probably_damaging(0.977) TCGA-ZF-AA54-01 2 179569667 179569667 C T TTN Silent p.E9877E 0.47 TCGA-ZF-AA54-01 2 183627460 183627460 C G DNAJC10 Missense_Mutation p.Q733E 0.40 tolerated(0.41) benign(0.045) TCGA-ZF-AA54-01 2 187712478 187712478 C T ZSWIM2 Silent p.P70P 0.57 TCGA-ZF-AA54-01 2 204131392 204131392 G A CYP20A1 Silent p.K196K 0.54 TCGA-ZF-AA54-01 2 220439446 220439446 G C INHA Missense_Mutation p.R100T 0.25 tolerated(0.72) benign(0.002) TCGA-ZF-AA54-01 2 25978892 25978892 G C ASXL2 Nonsense_Mutation p.S344* 0.38 TCGA-ZF-AA54-01 2 25990481 25990481 G A ASXL2 Missense_Mutation p.S249L 0.17 tolerated(0.13) benign(0.206) TCGA-ZF-AA54-01 2 25990523 25990523 G C ASXL2 Nonsense_Mutation p.S235* 0.17 TCGA-ZF-AA54-01 2 37402281 37402281 C G SULT6B1 Silent p.L168L 0.31 TCGA-ZF-AA54-01 2 37486731 37486731 G A PRKD3 Missense_Mutation p.P714S 0.07 deleterious(0) probably_damaging(0.961) TCGA-ZF-AA54-01 2 43934636 43934636 G C PLEKHH2 Missense_Mutation p.D640H 0.18 tolerated(0.16) benign(0.281) TCGA-ZF-AA54-01 2 71654188 71654188 C G ZNF638 Missense_Mutation p.P1730R 0.39 deleterious(0) probably_damaging(0.913) TCGA-ZF-AA54-01 2 90108550 90108550 C T IGKV6D-41 Silent p.F7F 0.44 TCGA-ZF-AA54-01 2 98275406 98275406 C T ACTR1B Missense_Mutation p.E126K 0.42 deleterious(0.03) probably_damaging(0.973) TCGA-ZF-AA54-01 2 99722092 99722092 C T TSGA10 Silent p.T93T 0.36 TCGA-ZF-AA54-01 3 101049231 101049231 C G SENP7 Splice_Site p.X900_splice 0.18 TCGA-ZF-AA54-01 3 128127101 128127101 G C EEFSEC Nonstop_Mutation p.*597Sext*51 0.19 TCGA-ZF-AA54-01 3 135721446 135721446 T C PPP2R3A Missense_Mutation p.I369T 0.32 tolerated_low_confidence(0.21) benign(0.001) TCGA-ZF-AA54-01 3 143691543 143691543 G A C3orf58 Silent p.Q123Q 0.34 TCGA-ZF-AA54-01 3 183901308 183901308 G A AP2M1 Silent p.L404L 0.28 TCGA-ZF-AA54-01 3 188478034 188478034 T A LPP Silent p.A458A 0.38 TCGA-ZF-AA54-01 3 32932659 32932659 C T TRIM71 Nonsense_Mutation p.R655* 0.14 TCGA-ZF-AA54-01 3 35750516 35750516 G C ARPP21 Intron 0.17 TCGA-ZF-AA54-01 3 39452591 39452591 G A RPSA Intron 0.28 TCGA-ZF-AA54-01 3 43122653 43122653 C T POMGNT2 Missense_Mutation p.E91K 0.25 tolerated(0.29) benign(0.214) TCGA-ZF-AA54-01 3 47278068 47278068 C A KIF9 Nonsense_Mutation p.E656* 0.29 TCGA-ZF-AA54-01 3 50374791 50374791 C A RASSF1 Intron 0.15 TCGA-ZF-AA54-01 3 52563270 52563270 C T NT5DC2 Missense_Mutation p.E105K 0.27 tolerated(0.11) probably_damaging(0.913) TCGA-ZF-AA54-01 3 69168268 69168268 T C LMOD3 Missense_Mutation p.Q413R 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-ZF-AA54-01 3 86114800 86114800 T C CADM2 Missense_Mutation p.I372T 0.15 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA54-01 4 25315676 25315676 C G ZCCHC4 Missense_Mutation p.L46V 0.11 deleterious(0) possibly_damaging(0.874) TCGA-ZF-AA54-01 4 25420034 25420034 A G ANAPC4 3'UTR 0.21 TCGA-ZF-AA54-01 4 46099337 46099337 T A GABRG1 Missense_Mutation p.E45V 0.08 deleterious(0.04) probably_damaging(0.987) TCGA-ZF-AA54-01 4 47905299 47905299 G C NFXL1 Silent p.P186P 0.17 TCGA-ZF-AA54-01 4 57164478 57164478 C G KIAA1211 Nonsense_Mutation p.S28* 0.25 TCGA-ZF-AA54-01 4 57237723 57237723 G A AASDH Missense_Mutation p.A252V 0.23 deleterious(0) probably_damaging(0.933) TCGA-ZF-AA54-01 4 66270151 66270151 C A EPHA5 Silent p.V577V 0.47 TCGA-ZF-AA54-01 4 87693944 87693944 C G PTPN13 Missense_Mutation p.L1733V 0.37 tolerated(0.59) benign(0.007) TCGA-ZF-AA54-01 4 88584476 88584476 C T DMP1 3'UTR 0.45 TCGA-ZF-AA54-01 5 110407525 110407525 G T TSLP 5'UTR 0.25 TCGA-ZF-AA54-01 5 112479054 112479054 C T MCC Missense_Mutation p.E249K 0.34 tolerated(0.07) probably_damaging(0.97) TCGA-ZF-AA54-01 5 131930578 131930578 C T RAD50 Missense_Mutation p.S604F 0.24 tolerated(0.29) benign(0.003) TCGA-ZF-AA54-01 5 140573032 140573032 C G PCDHB10 Missense_Mutation p.L303V 0.24 deleterious_low_confidence(0.01) benign(0.416) TCGA-ZF-AA54-01 5 149216298 149216298 C T PPARGC1B Silent p.I760I 0.30 TCGA-ZF-AA54-01 5 156923996 156923996 C G ADAM19 Missense_Mutation p.Q500H 0.30 deleterious(0.01) probably_damaging(0.94) TCGA-ZF-AA54-01 5 172535678 172535678 C T CREBRF Missense_Mutation p.S425L 0.24 deleterious(0.01) benign(0.154) TCGA-ZF-AA54-01 5 21854819 21854819 G A CDH12 Missense_Mutation p.L203F 0.22 deleterious(0.01) possibly_damaging(0.685) TCGA-ZF-AA54-01 5 22078740 22078740 C G CDH12 Missense_Mutation p.D16H 0.23 tolerated(0.68) benign(0.002) TCGA-ZF-AA54-01 5 3600220 3600220 C G IRX1 Silent p.L386L 0.20 TCGA-ZF-AA54-01 5 36251541 36251541 G A RANBP3L Nonsense_Mutation p.Q435* 0.29 TCGA-ZF-AA54-01 5 68572993 68572993 G C CDK7 3'UTR 0.24 TCGA-ZF-AA54-01 5 71524005 71524005 T C MRPS27 Intron 0.40 TCGA-ZF-AA54-01 5 76342249 76342249 G A AGGF1 Missense_Mutation p.M316I 0.22 tolerated(0.28) benign(0) TCGA-ZF-AA54-01 5 80109519 80109519 A G MSH3 Silent p.A924A 0.30 TCGA-ZF-AA54-01 5 94849305 94849305 G C TTC37 Silent p.L916L 0.24 TCGA-ZF-AA54-01 6 149953980 149953980 C G KATNA1 Missense_Mutation p.D79H 0.40 deleterious(0.01) possibly_damaging(0.77) TCGA-ZF-AA54-01 6 150023112 150023112 C T LATS1 Missense_Mutation p.E51K 0.37 tolerated_low_confidence(0.58) benign(0.146) TCGA-ZF-AA54-01 6 152765705 152765705 C G SYNE1 Missense_Mutation p.K1226N 0.45 benign(0.026) TCGA-ZF-AA54-01 6 169620364 169620364 C A THBS2 Missense_Mutation p.G1147V 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 6 170105454 170105454 G C C6orf120 3'UTR 0.23 TCGA-ZF-AA54-01 6 27100190 27100190 C A HIST1H2BJ Nonsense_Mutation p.E114* 0.31 TCGA-ZF-AA54-01 6 31106842 31106842 C G PSORS1C2 5'UTR 0.22 TCGA-ZF-AA54-01 6 33366075 33366075 G C KIFC1 Missense_Mutation p.R54T 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-ZF-AA54-01 6 33399937 33399937 G A SYNGAP1 Splice_Site p.X99_splice 0.32 TCGA-ZF-AA54-01 6 33400478 33400478 G A SYNGAP1 Missense_Mutation p.R135Q 0.41 deleterious(0) benign(0.262) TCGA-ZF-AA54-01 6 42986276 42986276 C T KLHDC3 Missense_Mutation p.R239C 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 6 44279886 44279886 C G AARS2 Missense_Mutation p.D120H 0.32 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 6 46976980 46976980 C G GPR110 Missense_Mutation p.D731H 0.21 deleterious(0) probably_damaging(0.965) TCGA-ZF-AA54-01 6 74079442 74079442 C T OOEP Missense_Mutation p.R25H 0.26 tolerated(0.12) benign(0.084) TCGA-ZF-AA54-01 7 100007055 100007055 G A ZCWPW1 Silent p.N288N 0.12 TCGA-ZF-AA54-01 7 100453341 100453341 C A SLC12A9 Silent p.R110R 0.18 TCGA-ZF-AA54-01 7 101821749 101821749 G A CUX1 Missense_Mutation p.E288K 0.24 tolerated(0.29) unknown(0) TCGA-ZF-AA54-01 7 101821761 101821761 G A CUX1 Missense_Mutation p.E292K 0.22 tolerated(0.31) unknown(0) TCGA-ZF-AA54-01 7 135302353 135302353 C T NUP205 Missense_Mutation p.L1232F 0.29 deleterious(0) possibly_damaging(0.589) TCGA-ZF-AA54-01 7 138269523 138269523 G C TRIM24 Missense_Mutation p.E994Q 0.25 tolerated(0.23) benign(0.11) TCGA-ZF-AA54-01 7 151711785 151711785 C G GALNTL5 Missense_Mutation p.I361M 0.19 deleterious(0) possibly_damaging(0.907) TCGA-ZF-AA54-01 7 51287509 51287509 C T COBL Silent p.L58L 0.30 TCGA-ZF-AA54-01 7 56085003 56085003 A G PSPH Silent p.I115I 0.11 TCGA-ZF-AA54-01 7 72849262 72849262 G C FZD9 Missense_Mutation p.E309Q 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-ZF-AA54-01 7 87004968 87004968 A G CROT Missense_Mutation p.K254R 0.23 tolerated(0.2) benign(0.008) TCGA-ZF-AA54-01 7 92883216 92883216 G C CCDC132 Missense_Mutation p.R90T 0.20 tolerated(0.36) probably_damaging(0.989) TCGA-ZF-AA54-01 8 102586040 102586040 C G GRHL2 Missense_Mutation p.I293M 0.28 tolerated(0.1) possibly_damaging(0.651) TCGA-ZF-AA54-01 8 11696139 11696139 G C FDFT1 3'UTR 0.42 TCGA-ZF-AA54-01 8 22423940 22423940 G A SORBS3 Missense_Mutation p.D345N 0.18 tolerated(0.09) possibly_damaging(0.754) TCGA-ZF-AA54-01 8 27401985 27401985 C G EPHX2 Silent p.L538L 0.29 TCGA-ZF-AA54-01 8 53596472 53596472 C G RB1CC1 Missense_Mutation p.R58T 0.15 deleterious(0) probably_damaging(0.989) TCGA-ZF-AA54-01 8 53596496 53596496 C T RB1CC1 Missense_Mutation p.G50E 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-AA54-01 8 9413492 9413494 CAA - TNKS In_Frame_Del p.Q17del 0.30 TCGA-ZF-AA54-01 9 131339520 131339520 C T SPTAN1 Silent p.L300L 0.49 TCGA-ZF-AA54-01 9 135797314 135797314 G - TSC1 Frame_Shift_Del p.Y185* 0.34 TCGA-ZF-AA54-01 9 136583879 136583879 C A SARDH Intron 0.39 TCGA-ZF-AA54-01 9 140127042 140127042 G A SLC34A3 Missense_Mutation p.G64D 0.05 tolerated(0.05) benign(0.188) TCGA-ZF-AA54-01 9 140127053 140127053 C T SLC34A3 Missense_Mutation p.R68C 0.54 tolerated(0.35) benign(0.17) TCGA-ZF-AA54-01 9 140128721 140128721 C T SLC34A3 Silent p.I362I 0.50 TCGA-ZF-AA54-01 9 140129072 140129072 C T SLC34A3 Silent p.I408I 0.26 TCGA-ZF-AA54-01 X 119760155 119760155 C G C1GALT1C1 Missense_Mutation p.M289I 0.53 deleterious(0.01) probably_damaging(0.945) TCGA-ZF-AA54-01 X 124097637 124097637 G T TENM1 5'UTR 0.23 TCGA-ZF-AA54-01 X 153006171 153006171 G A ABCD1 Missense_Mutation p.G593E 0.34 tolerated(0.1) possibly_damaging(0.516) TCGA-ZF-AA54-01 X 15311407 15311407 G C ASB11 Silent p.L135L 0.49 TCGA-ZF-AA54-01 X 41056737 41056737 G A USP9X Missense_Mutation p.E1452K 0.14 tolerated(0.29) benign(0.002) TCGA-ZF-AA54-01 X 70468614 70468614 G A ZMYM3 Silent p.L553L 0.33 TCGA-ZF-AA54-01 X 91873530 91873530 C T PCDH11X Missense_Mutation p.P1212L 0.48 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-ZF-AA56-01 10 102740680 102740680 C G SEMA4G Silent p.P523P 0.13 TCGA-ZF-AA56-01 10 104389858 104389858 G C SUFU Missense_Mutation p.K467N 0.11 tolerated(0.2) benign(0.071) TCGA-ZF-AA56-01 10 95791022 95791022 C G PLCE1 Silent p.L73L 0.12 TCGA-ZF-AA56-01 11 104877943 104877943 C G CASP5 Missense_Mutation p.K113N 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-ZF-AA56-01 11 48346559 48346559 G T OR4C3 Missense_Mutation p.V23L 0.10 tolerated_low_confidence(0.18) benign(0.001) TCGA-ZF-AA56-01 11 55433083 55433083 G A OR4C6 Nonsense_Mutation p.W147* 0.21 TCGA-ZF-AA56-01 11 5757852 5757852 C T OR56B1 Silent p.L36L 0.18 TCGA-ZF-AA56-01 11 77884925 77884925 C T KCTD21 Missense_Mutation p.E226K 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-ZF-AA56-01 12 105420454 105420454 C G ALDH1L2 Missense_Mutation p.R862T 0.14 deleterious(0.03) benign(0.02) TCGA-ZF-AA56-01 12 105553894 105553894 C A KIAA1033 Missense_Mutation p.L1010I 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-ZF-AA56-01 12 122437840 122437840 C T WDR66 Silent p.L1075L 0.16 TCGA-ZF-AA56-01 12 43833793 43833793 T C ADAMTS20 Silent p.Q790Q 0.26 TCGA-ZF-AA56-01 12 45000987 45000987 C A NELL2 Missense_Mutation p.C593F 0.13 deleterious(0) possibly_damaging(0.529) TCGA-ZF-AA56-01 12 4722802 4722802 G A DYRK4 Silent p.L482L 0.19 TCGA-ZF-AA56-01 13 33262637 33262637 A C PDS5B Missense_Mutation p.N467T 0.28 tolerated(0.24) benign(0.032) TCGA-ZF-AA56-01 14 28733724 28733724 C T BNIP3P1 RNA 0.50 TCGA-ZF-AA56-01 14 37050400 37050400 G C NKX2-8 Missense_Mutation p.R143G 0.30 tolerated(0.07) benign(0.063) TCGA-ZF-AA56-01 14 45711439 45711439 G A MIS18BP1 Missense_Mutation p.S314L 0.22 tolerated(0.21) benign(0.008) TCGA-ZF-AA56-01 14 51098998 51098998 C G ATL1 Missense_Mutation p.Q540E 0.22 tolerated_low_confidence(0.43) benign(0.012) TCGA-ZF-AA56-01 14 53185005 53185005 A T PSMC6 Missense_Mutation p.E231V 0.15 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA56-01 14 70926021 70926021 C T ADAM21 Missense_Mutation p.S602F 0.15 deleterious(0) benign(0.192) TCGA-ZF-AA56-01 14 71209224 71209224 C G MAP3K9 Missense_Mutation p.E471Q 0.27 tolerated(0.78) possibly_damaging(0.841) TCGA-ZF-AA56-01 14 75283677 75283677 G A YLPM1 Missense_Mutation p.R1910H 0.17 possibly_damaging(0.643) TCGA-ZF-AA56-01 14 75904727 75904727 T G JDP2 Missense_Mutation p.L46R 0.24 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA56-01 15 43826919 43826919 C T PPIP5K1 Missense_Mutation p.E1419K 0.35 tolerated_low_confidence(1) benign(0.001) TCGA-ZF-AA56-01 15 43827480 43827480 C G PPIP5K1 Missense_Mutation p.E1232Q 0.40 tolerated_low_confidence(0.08) benign(0.066) TCGA-ZF-AA56-01 15 49325231 49325231 C G SECISBP2L Missense_Mutation p.E199Q 0.04 deleterious(0) probably_damaging(0.987) TCGA-ZF-AA56-01 15 60648136 60648136 C T ANXA2 Silent p.L188L 0.18 TCGA-ZF-AA56-01 17 27829655 27829655 G A TAOK1 Missense_Mutation p.D418N 0.24 tolerated(0.25) benign(0.017) TCGA-ZF-AA56-01 17 32583295 32583295 C G CCL2 Nonsense_Mutation p.S44* 0.20 TCGA-ZF-AA56-01 17 42847157 42847157 G A ADAM11 Silent p.L103L 0.07 TCGA-ZF-AA56-01 17 47241497 47241497 C T B4GALNT2 Missense_Mutation p.R332C 0.49 deleterious(0.01) possibly_damaging(0.477) TCGA-ZF-AA56-01 17 61949905 61949905 C G CSH2 Intron 0.09 TCGA-ZF-AA56-01 17 63554211 63554211 G A AXIN2 Silent p.T176T 0.14 TCGA-ZF-AA56-01 17 6387578 6387578 C T PITPNM3 Silent p.R103R 0.06 TCGA-ZF-AA56-01 17 72874454 72874454 G C FADS6 3'UTR 0.24 TCGA-ZF-AA56-01 17 74527164 74527164 C T CYGB Missense_Mutation p.E146K 0.13 deleterious(0) possibly_damaging(0.449) TCGA-ZF-AA56-01 17 7812116 7812116 T A CHD3 Missense_Mutation p.M1847K 0.31 benign(0.149) TCGA-ZF-AA56-01 17 78328184 78328184 C G RNF213 Intron 0.23 TCGA-ZF-AA56-01 17 78363030 78363030 G A RNF213 Missense_Mutation p.D5020N 0.20 benign(0.091) TCGA-ZF-AA56-01 17 79514428 79514429 - CAGGCCGAGTC C17orf70 Frame_Shift_Ins p.C560Wfs*25 0.26 TCGA-ZF-AA56-01 18 29793442 29793442 C A MEP1B Missense_Mutation p.T500K 0.07 deleterious(0) possibly_damaging(0.703) TCGA-ZF-AA56-01 18 40323631 40323631 C G RIT2 Missense_Mutation p.E161Q 0.10 deleterious(0) probably_damaging(1) TCGA-ZF-AA56-01 19 19823533 19823533 C G ZNF14 Missense_Mutation p.R186T 0.17 tolerated(0.73) benign(0.434) TCGA-ZF-AA56-01 19 40901723 40901723 G A PRX Missense_Mutation p.H846Y 0.09 deleterious(0.01) benign(0.291) TCGA-ZF-AA56-01 19 41600885 41600885 C T CYP2A13 Silent p.L395L 0.25 TCGA-ZF-AA56-01 19 50060161 50060161 C T NOSIP Missense_Mutation p.E170K 0.16 tolerated(0.25) benign(0.027) TCGA-ZF-AA56-01 19 56539799 56539799 C T NLRP5 Missense_Mutation p.R734W 0.25 deleterious(0.05) benign(0.025) TCGA-ZF-AA56-01 19 58945495 58945495 G C ZNF132 Missense_Mutation p.A439G 0.12 tolerated(0.28) possibly_damaging(0.735) TCGA-ZF-AA56-01 19 6714367 6714367 C T C3 Missense_Mutation p.V199I 0.23 tolerated(0.06) benign(0.248) TCGA-ZF-AA56-01 19 6719303 6719303 G A C3 Silent p.F62F 0.10 TCGA-ZF-AA56-01 1 104160207 104160207 C T AMY2A Missense_Mutation p.P49S 0.16 deleterious(0) possibly_damaging(0.849) TCGA-ZF-AA56-01 1 12089942 12089942 C T MIIP Missense_Mutation p.A279V 0.16 tolerated(0.09) possibly_damaging(0.758) TCGA-ZF-AA56-01 1 14109091 14109091 G A PRDM2 Missense_Mutation p.A1601T 0.18 unknown(0) TCGA-ZF-AA56-01 1 145440746 145440746 G C TXNIP Missense_Mutation p.E316Q 0.06 tolerated(0.06) benign(0.374) TCGA-ZF-AA56-01 1 158639340 158639340 C T SPTA1 Missense_Mutation p.R564Q 0.14 tolerated(0.12) benign(0.202) TCGA-ZF-AA56-01 1 160851088 160851088 G A ITLN1 Silent p.Y140Y 0.07 TCGA-ZF-AA56-01 1 172579279 172579279 G T SUCO Missense_Mutation p.L1215F 0.17 tolerated(0.13) benign(0.033) TCGA-ZF-AA56-01 1 197031988 197031988 G A F13B Silent p.F88F 0.13 TCGA-ZF-AA56-01 1 201981535 201981536 - C ELF3 Frame_Shift_Ins p.Q151Pfs*10 0.21 TCGA-ZF-AA56-01 1 27992964 27992964 G A IFI6 Silent p.V115V 0.11 TCGA-ZF-AA56-01 1 32671293 32671293 A T IQCC Missense_Mutation p.E4V 0.27 deleterious_low_confidence(0) benign(0.014) TCGA-ZF-AA56-01 1 33134446 33134446 A C RBBP4 Silent p.S197S 0.24 TCGA-ZF-AA56-01 1 36372659 36372659 G C AGO1 Missense_Mutation p.K507N 0.17 deleterious(0.04) possibly_damaging(0.832) TCGA-ZF-AA56-01 1 39878220 39878220 G C KIAA0754 Silent p.L625L 0.12 TCGA-ZF-AA56-01 20 32217585 32217585 C T CBFA2T2 Missense_Mutation p.R374C 0.07 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA56-01 20 58560179 58560179 G A CDH26 Missense_Mutation p.E278K 0.23 tolerated(0.21) benign(0.064) TCGA-ZF-AA56-01 20 60921737 60921737 C T LAMA5 Splice_Site p.X397_splice 0.22 TCGA-ZF-AA56-01 21 40777913 40777913 G A LCA5L Silent p.P636P 0.18 TCGA-ZF-AA56-01 22 46656278 46656278 G A PKDREJ Missense_Mutation p.T981M 0.27 deleterious(0.02) possibly_damaging(0.882) TCGA-ZF-AA56-01 2 101584765 101584765 G T NPAS2 Missense_Mutation p.K310N 0.07 deleterious(0) probably_damaging(1) TCGA-ZF-AA56-01 2 103061773 103061773 T C IL18RAP Missense_Mutation p.S349P 0.31 tolerated(0.16) benign(0.02) TCGA-ZF-AA56-01 2 152348641 152348641 C T NEB Missense_Mutation p.R8343Q 0.09 probably_damaging(0.997) TCGA-ZF-AA56-01 2 191760340 191760340 C G GLS Missense_Mutation p.S165C 0.26 deleterious(0) benign(0.411) TCGA-ZF-AA56-01 2 206166544 206166544 C T PARD3B Intron 0.19 TCGA-ZF-AA56-01 2 220472880 220472880 T G STK11IP Missense_Mutation p.L455R 0.20 tolerated(0.56) benign(0.414) TCGA-ZF-AA56-01 2 231406669 231406669 G C SP100 Missense_Mutation p.L822F 0.12 deleterious(0) possibly_damaging(0.765) TCGA-ZF-AA56-01 2 27716338 27716338 G A FNDC4 Silent p.I154I 0.21 TCGA-ZF-AA56-01 2 39234291 39234291 C A SOS1 Missense_Mutation p.V852L 0.04 tolerated(0.61) benign(0.005) TCGA-ZF-AA56-01 2 86274333 86274333 C A POLR1A Missense_Mutation p.M896I 0.23 deleterious(0.01) benign(0.141) TCGA-ZF-AA56-01 3 100009530 100009530 C A TBC1D23 Silent p.S195S 0.04 TCGA-ZF-AA56-01 3 119217570 119217570 G C TIMMDC1 5'UTR 0.16 TCGA-ZF-AA56-01 3 123385188 123385188 G A MYLK Missense_Mutation p.P1237S 0.08 deleterious(0) benign(0.018) TCGA-ZF-AA56-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.49 deleterious(0.04) probably_damaging(0.96) TCGA-ZF-AA56-01 3 20161148 20161148 T G KAT2B Silent p.L403L 0.37 TCGA-ZF-AA56-01 3 35723250 35723250 G C ARPP21 Missense_Mutation p.E3Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-ZF-AA56-01 3 47098490 47098490 G A SETD2 Missense_Mutation p.P2262S 0.29 tolerated(0.14) benign(0.006) TCGA-ZF-AA56-01 3 99552036 99552036 G C FILIP1L 3'UTR 0.15 TCGA-ZF-AA56-01 4 5461922 5461922 C A STK32B Missense_Mutation p.F292L 0.09 tolerated(1) benign(0) TCGA-ZF-AA56-01 4 69184271 69184271 T C YTHDC1 Missense_Mutation p.H597R 0.21 deleterious(0) possibly_damaging(0.852) TCGA-ZF-AA56-01 4 83770122 83770122 G C SEC31A Missense_Mutation p.I779M 0.10 deleterious(0.01) possibly_damaging(0.863) TCGA-ZF-AA56-01 4 85645714 85645714 C G WDFY3 Missense_Mutation p.D2436H 0.30 deleterious(0.04) possibly_damaging(0.85) TCGA-ZF-AA56-01 4 88400731 88400731 C G SPARCL1 Splice_Site p.X606_splice 0.17 TCGA-ZF-AA56-01 5 162945242 162945242 C T MAT2B Missense_Mutation p.A293V 0.16 tolerated(0.11) benign(0.145) TCGA-ZF-AA56-01 5 179765522 179765522 C T GFPT2 Missense_Mutation p.R29Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA56-01 5 79374960 79374960 G A THBS4 Missense_Mutation p.G797D 0.31 deleterious(0) probably_damaging(1) TCGA-ZF-AA56-01 6 132891840 132891840 C T TAAR6 Missense_Mutation p.S127F 0.37 deleterious(0) possibly_damaging(0.469) TCGA-ZF-AA56-01 6 134583106 134583106 C G SGK1 Missense_Mutation p.E84Q 0.19 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-ZF-AA56-01 6 15410497 15410497 C G JARID2 Nonsense_Mutation p.S75* 0.13 TCGA-ZF-AA56-01 6 26043873 26043873 A T HIST1H2BB Missense_Mutation p.S5T 0.17 tolerated_low_confidence(0.08) benign(0) TCGA-ZF-AA56-01 6 28963251 28963251 C G ZNF311 Missense_Mutation p.D510H 0.14 tolerated(0.65) benign(0.178) TCGA-ZF-AA56-01 6 30657885 30657885 G A NRM Missense_Mutation p.S90F 0.11 tolerated(0.12) possibly_damaging(0.83) TCGA-ZF-AA56-01 6 35478658 35478658 G A TULP1 Missense_Mutation p.A160V 0.12 deleterious_low_confidence(0.04) benign(0.007) TCGA-ZF-AA56-01 6 46766363 46766363 C T MEP1A Nonsense_Mutation p.Q56* 0.22 TCGA-ZF-AA56-01 6 84904792 84904792 A C KIAA1009 Silent p.G279G 0.24 TCGA-ZF-AA56-01 6 90458947 90458947 G T MDN1 Missense_Mutation p.L1253I 0.28 benign(0.417) TCGA-ZF-AA56-01 6 90647930 90647930 G A BACH2 Missense_Mutation p.A659V 0.04 deleterious(0.01) benign(0.16) TCGA-ZF-AA56-01 7 142139483 142139483 G T TRBV7-6 Missense_Mutation p.H48N 0.11 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA56-01 7 148112657 148112657 C A CNTNAP2 Missense_Mutation p.D1315E 0.17 tolerated(0.72) benign(0.019) TCGA-ZF-AA56-01 7 5568128 5568128 G A ACTB Missense_Mutation p.R196C 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-ZF-AA56-01 7 73790609 73790609 G T CLIP2 Missense_Mutation p.K626N 0.19 deleterious(0) possibly_damaging(0.811) TCGA-ZF-AA56-01 7 83023647 83023647 A T SEMA3E Missense_Mutation p.V489D 0.41 deleterious(0.04) benign(0.005) TCGA-ZF-AA56-01 8 104453809 104453809 C G DCAF13 Missense_Mutation p.Q557E 0.07 tolerated(0.48) benign(0.01) TCGA-ZF-AA56-01 8 110100339 110100339 T C TRHR Missense_Mutation p.Y200H 0.35 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA56-01 8 123965662 123965662 G C ZHX2 Missense_Mutation p.E638Q 0.18 tolerated(0.05) benign(0.231) TCGA-ZF-AA56-01 8 124351680 124351680 C T ATAD2 Missense_Mutation p.E909K 0.26 tolerated(0.7) benign(0.028) TCGA-ZF-AA56-01 8 145003665 145003665 C T PLEC Missense_Mutation p.E1137K 0.29 unknown(0) TCGA-ZF-AA56-01 8 42045016 42045016 C T PLAT Missense_Mutation p.E147K 0.14 tolerated(0.08) possibly_damaging(0.61) TCGA-ZF-AA56-01 8 95795951 95795951 C T DPY19L4 Missense_Mutation p.A590V 0.12 tolerated(0.27) benign(0.003) TCGA-ZF-AA56-01 9 130984852 130984852 C T DNM1 Missense_Mutation p.R369C 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-ZF-AA56-01 9 132381833 132381833 G C C9orf50 Missense_Mutation p.H228D 0.32 tolerated(0.14) benign(0.446) TCGA-ZF-AA56-01 9 5457197 5457197 G T CD274 Missense_Mutation p.W57C 0.30 deleterious(0) probably_damaging(1) TCGA-ZF-AA56-01 9 86284243 86284243 C G UBQLN1 Splice_Site p.X369_splice 0.29 TCGA-ZF-AA56-01 X 138612941 138612941 G A F9 Missense_Mutation p.M6I 0.16 tolerated_low_confidence(0.47) benign(0) TCGA-ZF-AA56-01 X 2209583 2209583 G A DHRSX Silent p.F116F 0.11 TCGA-ZF-AA56-01 X 24483621 24483621 G A PDK3 Missense_Mutation p.E17K 0.28 deleterious(0.03) benign(0.001) TCGA-ZF-AA56-01 X 27766666 27766666 G A DCAF8L2 Missense_Mutation p.G552R 0.14 deleterious(0.05) benign(0.328) TCGA-ZF-AA56-01 X 44950105 44950106 - T KDM6A Frame_Shift_Ins p.K1293* 0.13 TCGA-ZF-AA56-01 X 53620515 53620515 C G HUWE1 Missense_Mutation p.E1184Q 0.24 benign(0.145) TCGA-ZF-AA56-01 X 74288844 74288844 G C ABCB7 Missense_Mutation p.Q554E 0.13 deleterious(0) probably_damaging(0.984) TCGA-ZF-AA58-01 10 100995414 100995414 A G HPSE2 Missense_Mutation p.V49A 0.15 tolerated(1) benign(0.001) TCGA-ZF-AA58-01 10 101553314 101553314 G A ABCC2 Missense_Mutation p.V114I 0.14 tolerated(0.21) possibly_damaging(0.799) TCGA-ZF-AA58-01 10 103551118 103551118 C G MGEA5 Missense_Mutation p.G752R 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-ZF-AA58-01 10 115515093 115515093 G C PLEKHS1 5'UTR 0.18 TCGA-ZF-AA58-01 10 118434610 118434610 C G HSPA12A Missense_Mutation p.K570N 0.21 deleterious(0.01) possibly_damaging(0.546) TCGA-ZF-AA58-01 10 1279783 1279783 G A ADARB2 Missense_Mutation p.R456W 0.06 deleterious(0) probably_damaging(0.94) TCGA-ZF-AA58-01 10 13151272 13151272 G T OPTN Missense_Mutation p.E50D 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 10 27459801 27459801 C T MASTL Missense_Mutation p.P638L 0.17 tolerated(0.07) possibly_damaging(0.461) TCGA-ZF-AA58-01 10 32306218 32306218 C T KIF5B Missense_Mutation p.E872K 0.16 deleterious(0) benign(0.084) TCGA-ZF-AA58-01 10 38120937 38120937 G C ZNF248 Nonsense_Mutation p.S449* 0.12 TCGA-ZF-AA58-01 10 50374881 50374881 G A C10orf128 Intron 0.20 TCGA-ZF-AA58-01 10 75185861 75185861 C T MSS51 Silent p.R259R 0.11 TCGA-ZF-AA58-01 10 81072495 81072495 G C ZMIZ1 Missense_Mutation p.E1065Q 0.16 unknown(0) TCGA-ZF-AA58-01 10 86133500 86133500 G A CCSER2 Missense_Mutation p.E515K 0.13 deleterious(0) probably_damaging(0.914) TCGA-ZF-AA58-01 11 100064246 100064246 A G CNTN5 Missense_Mutation p.K579E 0.18 tolerated(0.16) benign(0.013) TCGA-ZF-AA58-01 11 108382902 108382902 C G EXPH5 Missense_Mutation p.R1111T 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 11 111951297 111951297 C G C11orf57 Intron 0.10 TCGA-ZF-AA58-01 11 116633293 116633293 C G BUD13 Missense_Mutation p.D338H 0.07 tolerated(0.14) benign(0.007) TCGA-ZF-AA58-01 11 124756680 124756680 G T ROBO4 Missense_Mutation p.P825H 0.09 deleterious(0) possibly_damaging(0.893) TCGA-ZF-AA58-01 11 14865418 14865418 C T PDE3B Missense_Mutation p.S789L 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 11 534286 534286 C G HRAS Missense_Mutation p.G13R 0.33 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA58-01 11 58377337 58377337 T A ZFP91 Silent p.S135S 0.10 TCGA-ZF-AA58-01 11 58377347 58377347 C G ZFP91 Missense_Mutation p.Q139E 0.14 tolerated_low_confidence(0.18) benign(0.024) TCGA-ZF-AA58-01 11 59620470 59620470 T C TCN1 Missense_Mutation p.E427G 0.17 deleterious(0.01) possibly_damaging(0.798) TCGA-ZF-AA58-01 11 60781470 60781470 C T CD6 Silent p.I457I 0.19 TCGA-ZF-AA58-01 11 61026747 61026747 G T VWCE Silent p.S756S 0.33 TCGA-ZF-AA58-01 11 63764993 63764993 G C OTUB1 Missense_Mutation p.G264A 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-ZF-AA58-01 11 64675047 64675047 G T ATG2A Nonsense_Mutation p.S866* 0.50 TCGA-ZF-AA58-01 11 6648426 6648426 G C DCHS1 Missense_Mutation p.I1948M 0.24 deleterious(0) possibly_damaging(0.781) TCGA-ZF-AA58-01 11 70266505 70266505 G C CTTN Splice_Site p.X227_splice 0.11 TCGA-ZF-AA58-01 11 77333667 77333667 G A CLNS1A Missense_Mutation p.S175F 0.21 tolerated(0.06) benign(0.127) TCGA-ZF-AA58-01 12 114261119 114261119 C T RBM19 Silent p.P931P 0.29 TCGA-ZF-AA58-01 12 117365827 117365827 G A FBXW8 Splice_Site p.X107_splice 0.12 TCGA-ZF-AA58-01 12 13103184 13103184 G C GPRC5D Silent p.L45L 0.15 TCGA-ZF-AA58-01 12 14766207 14766207 C G GUCY2C Missense_Mutation p.L1022F 0.16 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA58-01 12 20523143 20523143 C T PDE3A Missense_Mutation p.R309W 0.32 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 12 31605324 31605324 G C DENND5B Missense_Mutation p.I393M 0.20 tolerated(0.09) possibly_damaging(0.729) TCGA-ZF-AA58-01 12 49224308 49224308 G A DDX23 Missense_Mutation p.H803Y 0.05 tolerated(0.13) benign(0.168) TCGA-ZF-AA58-01 12 49445809 49445809 G C KMT2D Missense_Mutation p.P553A 0.12 unknown(0) TCGA-ZF-AA58-01 12 52981602 52981602 C T KRT72 Missense_Mutation p.E375K 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA58-01 12 57591393 57591393 G A LRP1 Silent p.V3076V 0.14 TCGA-ZF-AA58-01 12 57892220 57892220 A C MARS Missense_Mutation p.Q302P 0.18 deleterious(0.03) benign(0.003) TCGA-ZF-AA58-01 12 7177777 7177777 G C C1S Missense_Mutation p.G630A 0.07 deleterious(0) probably_damaging(1) TCGA-ZF-AA58-01 12 72021644 72021644 G A ZFC3H1 Silent p.Y1339Y 0.21 TCGA-ZF-AA58-01 13 101735502 101735502 A G NALCN Missense_Mutation p.F1211L 0.14 tolerated(0.48) benign(0.008) TCGA-ZF-AA58-01 13 106118626 106118626 G A DAOA 5'UTR 0.07 TCGA-ZF-AA58-01 13 109707445 109707445 G C MYO16 Missense_Mutation p.D1012H 0.13 deleterious(0.04) benign(0.099) TCGA-ZF-AA58-01 13 20716832 20716832 T C GJA3 Missense_Mutation p.E199G 0.09 deleterious(0) probably_damaging(1) TCGA-ZF-AA58-01 13 25399840 25399840 C G RNF17 Silent p.L725L 0.17 TCGA-ZF-AA58-01 13 25480538 25480538 C G CENPJ Missense_Mutation p.M546I 0.10 tolerated(0.1) benign(0) TCGA-ZF-AA58-01 13 25671746 25671746 C T PABPC3 Silent p.V470V 0.06 TCGA-ZF-AA58-01 13 31498487 31498487 G C MEDAG Missense_Mutation p.R276T 0.04 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-ZF-AA58-01 13 33016807 33016807 G C N4BP2L2 Missense_Mutation p.Q623E 0.12 tolerated(0.15) probably_damaging(0.946) TCGA-ZF-AA58-01 13 39265803 39265803 C T FREM2 Missense_Mutation p.T1441I 0.18 deleterious(0) probably_damaging(0.92) TCGA-ZF-AA58-01 13 39585334 39585334 C G PROSER1 3'UTR 0.20 TCGA-ZF-AA58-01 13 49039230 49039230 C T RB1 Nonsense_Mutation p.Q770* 0.33 TCGA-ZF-AA58-01 13 61102943 61102943 T A TDRD3 Nonsense_Mutation p.Y528* 0.11 TCGA-ZF-AA58-01 13 77664333 77664333 G A MYCBP2 Missense_Mutation p.S3440L 0.15 probably_damaging(0.92) TCGA-ZF-AA58-01 14 20852874 20852874 T G TEP1 Splice_Site p.X1036_splice 0.11 TCGA-ZF-AA58-01 14 22237159 22237159 C A TRAV6 Missense_Mutation p.P79Q 0.20 deleterious(0) probably_damaging(0.965) TCGA-ZF-AA58-01 14 22965925 22965925 T A TRAJ42 Missense_Mutation p.S19T 0.06 unknown(0) TCGA-ZF-AA58-01 14 45696960 45696960 T A MIS18BP1 Missense_Mutation p.H551L 0.09 tolerated(0.23) benign(0.011) TCGA-ZF-AA58-01 14 64894063 64894063 C T MTHFD1 Missense_Mutation p.P379L 0.17 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA58-01 14 72202048 72202048 C T SIPA1L1 Missense_Mutation p.A1709V 0.11 tolerated(0.26) benign(0.004) TCGA-ZF-AA58-01 14 95562454 95562454 C G DICER1 Missense_Mutation p.K1601N 0.27 tolerated(0.4) benign(0) TCGA-ZF-AA58-01 15 41827041 41827041 C G RPAP1 Missense_Mutation p.G212R 0.21 deleterious(0) probably_damaging(0.957) TCGA-ZF-AA58-01 15 89385009 89385009 A G ACAN Missense_Mutation p.D223G 0.15 deleterious(0) unknown(0) TCGA-ZF-AA58-01 15 98513969 98513969 C T ARRDC4 Missense_Mutation p.S399L 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA58-01 16 31512031 31512031 C A C16orf58 Missense_Mutation p.R146L 0.10 deleterious(0) possibly_damaging(0.657) TCGA-ZF-AA58-01 16 3163422 3163422 G A ZNF205 5'UTR 0.31 TCGA-ZF-AA58-01 16 55525819 55525819 G C MMP2 Missense_Mutation p.K429N 0.16 deleterious(0.02) probably_damaging(0.972) TCGA-ZF-AA58-01 16 55846893 55846893 A T CES1 Silent p.L336L 0.19 TCGA-ZF-AA58-01 16 55846894 55846894 A T CES1 Missense_Mutation p.L336H 0.19 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA58-01 16 61854992 61854992 T G CDH8 Missense_Mutation p.E287D 0.11 deleterious(0) probably_damaging(0.961) TCGA-ZF-AA58-01 17 15341052 15341052 A T TVP23C-CDRT4 3'UTR 0.29 TCGA-ZF-AA58-01 17 16705767 16705767 G C CCDC144A 3'UTR 0.11 TCGA-ZF-AA58-01 17 28419166 28419166 G T EFCAB5 Missense_Mutation p.K1405N 0.11 deleterious(0.01) possibly_damaging(0.733) TCGA-ZF-AA58-01 17 34893709 34893709 G C PIGW Missense_Mutation p.L253F 0.11 tolerated(0.06) benign(0.021) TCGA-ZF-AA58-01 17 34894479 34894479 G C PIGW 3'UTR 0.10 TCGA-ZF-AA58-01 17 53392723 53392723 G A HLF Missense_Mutation p.R196H 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA58-01 17 56388554 56388554 G C BZRAP1 Silent p.P1034P 0.20 TCGA-ZF-AA58-01 17 66381224 66381224 G C ARSG Missense_Mutation p.Q334H 0.20 tolerated(0.06) probably_damaging(0.957) TCGA-ZF-AA58-01 17 67047198 67047198 A T ABCA9 Missense_Mutation p.W24R 0.10 deleterious(0.04) benign(0.12) TCGA-ZF-AA58-01 17 71165503 71165503 A G SSTR2 Silent p.L15L 0.11 TCGA-ZF-AA58-01 17 7221241 7221241 G A NEURL4 Silent p.F1357F 0.24 TCGA-ZF-AA58-01 17 7221903 7221903 G T NEURL4 Missense_Mutation p.H1259N 0.16 tolerated(0.06) benign(0.026) TCGA-ZF-AA58-01 17 72838591 72838591 G C GRIN2C Missense_Mutation p.L1229V 0.28 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-ZF-AA58-01 17 7318929 7318929 C G NLGN2 Silent p.L379L 0.08 TCGA-ZF-AA58-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.39 deleterious(0) probably_damaging(0.947) TCGA-ZF-AA58-01 17 77043890 77043890 T C C1QTNF1 Missense_Mutation p.V189A 0.19 deleterious(0.01) possibly_damaging(0.474) TCGA-ZF-AA58-01 17 79094996 79094996 C T AATK Missense_Mutation p.D914N 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA58-01 18 3126761 3126761 C G MYOM1 Missense_Mutation p.D977H 0.14 tolerated(0.34) probably_damaging(0.964) TCGA-ZF-AA58-01 18 32650241 32650241 G A MAPRE2 Missense_Mutation p.D69N 0.09 deleterious(0.02) possibly_damaging(0.9) TCGA-ZF-AA58-01 18 33785224 33785224 C T MOCOS Silent p.I401I 0.15 TCGA-ZF-AA58-01 18 77193698 77193698 G A NFATC1 Missense_Mutation p.G436E 0.25 deleterious(0) probably_damaging(0.995) TCGA-ZF-AA58-01 19 10657877 10657877 G C ATG4D Missense_Mutation p.E261D 0.19 tolerated(0.14) benign(0.333) TCGA-ZF-AA58-01 19 12638698 12638698 T G ZNF564 Missense_Mutation p.K75T 0.16 tolerated(0.08) benign(0.008) TCGA-ZF-AA58-01 19 17036032 17036032 C G CPAMD8 Missense_Mutation p.R1221T 0.11 tolerated(0.53) benign(0.015) TCGA-ZF-AA58-01 19 18377882 18377882 C T KIAA1683 Silent p.T156T 0.13 TCGA-ZF-AA58-01 19 20807790 20807790 G A ZNF626 Missense_Mutation p.S298L 0.16 deleterious(0.01) benign(0.194) TCGA-ZF-AA58-01 19 20807848 20807848 G A ZNF626 Missense_Mutation p.H279Y 0.22 deleterious(0.02) probably_damaging(0.964) TCGA-ZF-AA58-01 19 22193652 22193652 G A ZNF208 5'UTR 0.06 TCGA-ZF-AA58-01 19 31768818 31768818 C T TSHZ3 Silent p.K627K 0.10 TCGA-ZF-AA58-01 19 35831921 35831921 G T CD22 Nonsense_Mutation p.E463* 0.15 TCGA-ZF-AA58-01 19 36053394 36053394 G A ATP4A Silent p.I121I 0.10 TCGA-ZF-AA58-01 19 38127148 38127148 C G ZFP30 Missense_Mutation p.M98I 0.16 tolerated(1) benign(0) TCGA-ZF-AA58-01 19 38861502 38861502 C T CATSPERG 3'UTR 0.14 TCGA-ZF-AA58-01 19 41245405 41245405 C T ITPKC Silent p.D664D 0.18 TCGA-ZF-AA58-01 19 42191091 42191091 C T CEACAM7 Silent p.P42P 0.13 TCGA-ZF-AA58-01 19 43406527 43406527 C T PSG6 3'Flank 0.05 TCGA-ZF-AA58-01 19 51628939 51628939 C T SIGLEC9 Silent p.A169A 0.37 TCGA-ZF-AA58-01 19 52852449 52852449 G A ZNF610 Silent p.Q8Q 0.08 TCGA-ZF-AA58-01 19 55672736 55672736 G A DNAAF3 Silent p.V306V 0.33 TCGA-ZF-AA58-01 19 6693063 6693063 G C C3 Missense_Mutation p.L1088V 0.11 deleterious(0.01) benign(0.139) TCGA-ZF-AA58-01 19 8562693 8562693 C T PRAM1 Missense_Mutation p.D511N 0.17 tolerated(0.08) benign(0.013) TCGA-ZF-AA58-01 1 100618081 100618081 C G LRRC39 Splice_Site p.X271_splice 0.14 TCGA-ZF-AA58-01 1 10355147 10355147 C G KIF1B Missense_Mutation p.P486A 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-ZF-AA58-01 1 113653034 113653034 C T LRIG2 Missense_Mutation p.R550C 0.20 deleterious(0.01) probably_damaging(0.935) TCGA-ZF-AA58-01 1 115137119 115137119 C T DENND2C Silent p.L802L 0.15 TCGA-ZF-AA58-01 1 147230738 147230738 C T GJA5 Silent p.E203E 0.11 TCGA-ZF-AA58-01 1 150445215 150445215 G C RPRD2 Missense_Mutation p.G1264A 0.12 deleterious_low_confidence(0) benign(0.136) TCGA-ZF-AA58-01 1 150463906 150463906 G A TARS2 Silent p.R183R 0.16 TCGA-ZF-AA58-01 1 151537068 151537068 C G TUFT1 Missense_Mutation p.S131C 0.11 tolerated(0.08) benign(0.019) TCGA-ZF-AA58-01 1 151798408 151798408 C T RORC Intron 0.09 TCGA-ZF-AA58-01 1 154947386 154947386 G C CKS1B Intron 0.13 TCGA-ZF-AA58-01 1 158326666 158326666 C A CD1E Missense_Mutation p.R383S 0.08 tolerated(0.55) benign(0.003) TCGA-ZF-AA58-01 1 183908151 183908151 T C COLGALT2 Missense_Mutation p.Y542C 0.13 deleterious(0) possibly_damaging(0.827) TCGA-ZF-AA58-01 1 200586969 200586969 G A KIF14 Nonsense_Mutation p.Q295* 0.15 TCGA-ZF-AA58-01 1 203743172 203743172 C T LAX1 Missense_Mutation p.S187L 0.09 deleterious(0) probably_damaging(0.978) TCGA-ZF-AA58-01 1 212190365 212190365 C T INTS7 Silent p.R124R 0.21 TCGA-ZF-AA58-01 1 214170364 214170364 G A PROX1 Silent p.L162L 0.16 TCGA-ZF-AA58-01 1 215848546 215848546 C T USH2A Missense_Mutation p.C4236Y 0.09 benign(0.001) TCGA-ZF-AA58-01 1 222803056 222803056 G A MIA3 Missense_Mutation p.D832N 0.21 tolerated(0.06) possibly_damaging(0.649) TCGA-ZF-AA58-01 1 226040394 226040394 C G TMEM63A Missense_Mutation p.S625T 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 1 228432185 228432185 G A OBSCN Missense_Mutation p.V1224M 0.15 probably_damaging(0.971) TCGA-ZF-AA58-01 1 22965814 22965814 G A C1QA Missense_Mutation p.E218K 0.44 deleterious(0.01) probably_damaging(0.952) TCGA-ZF-AA58-01 1 240072524 240072524 G C CHRM3 Nonstop_Mutation p.*591Yext*27 0.15 TCGA-ZF-AA58-01 1 240370747 240370747 C A FMN2 Missense_Mutation p.P879T 0.19 unknown(0) TCGA-ZF-AA58-01 1 24080918 24080918 G C TCEB3 Missense_Mutation p.D613H 0.08 deleterious(0.04) benign(0.37) TCGA-ZF-AA58-01 1 33097434 33097434 G - ZBTB8OS Frame_Shift_Del p.S137* 0.12 TCGA-ZF-AA58-01 1 46472021 46472021 G C MAST2 Missense_Mutation p.E286Q 0.11 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-ZF-AA58-01 1 57258449 57258449 G C C1orf168 Missense_Mutation p.R13G 0.09 deleterious(0) probably_damaging(0.97) TCGA-ZF-AA58-01 1 71512570 71512570 C T PTGER3 Missense_Mutation p.A231T 0.14 tolerated(0.1) probably_damaging(0.986) TCGA-ZF-AA58-01 1 78959035 78959035 C T PTGFR Silent p.L203L 0.10 TCGA-ZF-AA58-01 1 85790515 85790515 C G DDAH1 Missense_Mutation p.D217H 0.27 deleterious(0) probably_damaging(0.991) TCGA-ZF-AA58-01 1 98058935 98058935 C T DPYD Missense_Mutation p.A323T 0.08 tolerated(0.14) benign(0.016) TCGA-ZF-AA58-01 20 13866940 13866940 C G SEL1L2 Missense_Mutation p.Q298H 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-ZF-AA58-01 20 14665497 14665497 T G MACROD2 Missense_Mutation p.C104G 0.08 deleterious(0) probably_damaging(0.933) TCGA-ZF-AA58-01 20 17950722 17950722 G C MGME1 Missense_Mutation p.E74Q 0.19 deleterious(0) possibly_damaging(0.736) TCGA-ZF-AA58-01 20 45000485 45000485 C T ELMO2 Missense_Mutation p.E514K 0.21 deleterious(0) probably_damaging(0.967) TCGA-ZF-AA58-01 20 50140128 50140128 G C NFATC2 Missense_Mutation p.P218A 0.04 deleterious(0.03) probably_damaging(0.984) TCGA-ZF-AA58-01 20 57484229 57484229 G C GNAS Missense_Mutation p.K824N 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-ZF-AA58-01 20 5904567 5904567 C A CHGB Missense_Mutation p.P593T 0.16 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA58-01 20 61039961 61039961 G A GATA5 Silent p.A375A 0.14 TCGA-ZF-AA58-01 21 37618232 37618232 C T DOPEY2 Silent p.L1318L 0.24 TCGA-ZF-AA58-01 21 39671503 39671503 G A KCNJ15 Missense_Mutation p.C107Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 22 41565575 41565575 A G EP300 Missense_Mutation p.Y1414C 0.31 probably_damaging(0.999) TCGA-ZF-AA58-01 22 44335870 44335870 C G PNPLA3 Intron 0.14 TCGA-ZF-AA58-01 2 100912009 100912009 C G LONRF2 Missense_Mutation p.A495P 0.06 deleterious(0.02) possibly_damaging(0.897) TCGA-ZF-AA58-01 2 120413948 120413948 G C PCDP1 Missense_Mutation p.D809H 0.23 deleterious(0.02) possibly_damaging(0.853) TCGA-ZF-AA58-01 2 135099183 135099183 T A MGAT5 Missense_Mutation p.L277Q 0.10 deleterious(0) probably_damaging(0.994) TCGA-ZF-AA58-01 2 135099198 135099198 G A MGAT5 Missense_Mutation p.G282E 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA58-01 2 135102577 135102577 G A MGAT5 Missense_Mutation p.D352N 0.11 deleterious(0.02) possibly_damaging(0.833) TCGA-ZF-AA58-01 2 141116514 141116514 G C LRP1B Silent p.V3711V 0.10 TCGA-ZF-AA58-01 2 149864504 149864504 G C KIF5C Missense_Mutation p.G825R 0.09 tolerated(0.05) possibly_damaging(0.821) TCGA-ZF-AA58-01 2 150294289 150294289 G A LYPD6 Missense_Mutation p.A23T 0.26 tolerated(0.3) possibly_damaging(0.48) TCGA-ZF-AA58-01 2 154996991 154996991 G T GALNT13 Missense_Mutation p.R95I 0.10 deleterious(0) possibly_damaging(0.891) TCGA-ZF-AA58-01 2 168102923 168102923 A C XIRP2 Missense_Mutation p.K1674T 0.24 probably_damaging(1) TCGA-ZF-AA58-01 2 201677975 201677975 C A BZW1 Nonsense_Mutation p.S44* 0.21 TCGA-ZF-AA58-01 2 202725511 202725511 C A CDK15 Intron 0.09 TCGA-ZF-AA58-01 2 204131302 204131302 G T CYP20A1 Missense_Mutation p.Q166H 0.03 deleterious(0.01) probably_damaging(0.981) TCGA-ZF-AA58-01 2 236839531 236839531 G C AGAP1 Missense_Mutation p.E483Q 0.28 tolerated(0.07) possibly_damaging(0.5) TCGA-ZF-AA58-01 2 238680748 238680748 G A LRRFIP1 Missense_Mutation p.E512K 0.38 deleterious(0) possibly_damaging(0.497) TCGA-ZF-AA58-01 2 242192894 242192894 C T HDLBP Missense_Mutation p.E403K 0.38 tolerated(0.06) benign(0.271) TCGA-ZF-AA58-01 2 37227804 37227805 CA - HEATR5B Frame_Shift_Del p.E1824Gfs*13 0.12 TCGA-ZF-AA58-01 2 37439059 37439059 T G CEBPZ Missense_Mutation p.E909D 0.13 tolerated(0.42) benign(0.02) TCGA-ZF-AA58-01 2 44065138 44065138 G A ABCG5 Intron 0.33 TCGA-ZF-AA58-01 2 54856731 54856731 G T SPTBN1 Silent p.V820V 0.27 TCGA-ZF-AA58-01 2 73476281 73476281 G C CCT7 Missense_Mutation p.E316Q 0.08 tolerated(0.27) benign(0.066) TCGA-ZF-AA58-01 2 97498337 97498337 G A CNNM3 Missense_Mutation p.R703Q 0.14 tolerated_low_confidence(0.08) benign(0.033) TCGA-ZF-AA58-01 3 121825286 121825286 G A CD86 Missense_Mutation p.M214I 0.14 tolerated(0.2) benign(0.03) TCGA-ZF-AA58-01 3 122419063 122419063 C T PARP14 Silent p.F554F 0.14 TCGA-ZF-AA58-01 3 129155869 129155869 G C MBD4 Missense_Mutation p.N206K 0.11 tolerated(0.17) benign(0.016) TCGA-ZF-AA58-01 3 184290795 184290795 G A EPHB3 Silent p.A229A 0.18 TCGA-ZF-AA58-01 3 25470108 25470108 G A RARB 5'UTR 0.21 TCGA-ZF-AA58-01 3 367734 367734 A T CHL1 Missense_Mutation p.N62Y 0.11 deleterious(0.01) benign(0.134) TCGA-ZF-AA58-01 3 39226079 39226079 C A XIRP1 Nonsense_Mutation p.E1620* 0.24 TCGA-ZF-AA58-01 3 43618481 43618481 G C ANO10 Missense_Mutation p.H289D 0.08 deleterious(0) probably_damaging(0.916) TCGA-ZF-AA58-01 3 48716386 48716386 G A NCKIPSD Silent p.V572V 0.04 TCGA-ZF-AA58-01 3 49084658 49084658 C T QRICH1 Missense_Mutation p.E454K 0.12 deleterious(0.04) benign(0.164) TCGA-ZF-AA58-01 3 49249238 49249238 A T CCDC36 Nonsense_Mutation p.K9* 0.12 TCGA-ZF-AA58-01 3 49737991 49737991 C T RNF123 Silent p.G399G 0.06 TCGA-ZF-AA58-01 3 49758798 49758798 C T RNF123 3'UTR 0.12 TCGA-ZF-AA58-01 3 52557053 52557053 G A STAB1 Missense_Mutation p.R2308Q 0.16 tolerated(0.74) benign(0.001) TCGA-ZF-AA58-01 3 65350346 65350346 T C MAGI1 Silent p.A1115A 0.18 TCGA-ZF-AA58-01 3 66430871 66430871 G T LRIG1 Missense_Mutation p.S1033Y 0.10 tolerated_low_confidence(0.12) benign(0.002) TCGA-ZF-AA58-01 3 9495513 9495513 G C SETD5 Missense_Mutation p.E813Q 0.11 tolerated(0.06) possibly_damaging(0.456) TCGA-ZF-AA58-01 3 9547687 9547687 C G LHFPL4 Missense_Mutation p.D203H 0.06 tolerated(0.07) possibly_damaging(0.458) TCGA-ZF-AA58-01 4 120169949 120169949 C G USP53 Nonsense_Mutation p.S95* 0.11 TCGA-ZF-AA58-01 4 122820835 122820835 G T TRPC3 Missense_Mutation p.Q827K 0.16 tolerated(0.43) benign(0.001) TCGA-ZF-AA58-01 4 155505256 155505256 C A FGA 3'UTR 0.29 TCGA-ZF-AA58-01 4 156831287 156831287 G T TDO2 Missense_Mutation p.R181L 0.11 tolerated(0.26) possibly_damaging(0.495) TCGA-ZF-AA58-01 4 27010432 27010432 C T STIM2 Missense_Mutation p.R441C 0.14 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA58-01 4 41984425 41984425 C T DCAF4L1 Nonsense_Mutation p.Q206* 0.16 TCGA-ZF-AA58-01 4 42965028 42965028 A G GRXCR1 Silent p.V168V 0.26 TCGA-ZF-AA58-01 4 46060510 46060510 G A GABRG1 Missense_Mutation p.T252M 0.24 deleterious(0) probably_damaging(0.934) TCGA-ZF-AA58-01 4 5469793 5469793 G A STK32B Missense_Mutation p.E368K 0.26 deleterious(0.02) possibly_damaging(0.844) TCGA-ZF-AA58-01 5 10442379 10442379 C T ROPN1L Nonsense_Mutation p.Q34* 0.13 TCGA-ZF-AA58-01 5 127627252 127627252 A G FBN2 Silent p.F2087F 0.18 TCGA-ZF-AA58-01 5 132560865 132560865 A G FSTL4 Missense_Mutation p.I430T 0.20 deleterious(0) probably_damaging(0.981) TCGA-ZF-AA58-01 5 13717530 13717530 T A DNAH5 Missense_Mutation p.K4200M 0.15 probably_damaging(0.934) TCGA-ZF-AA58-01 5 13841027 13841027 G C DNAH5 Missense_Mutation p.I1899M 0.06 benign(0.308) TCGA-ZF-AA58-01 5 140603088 140603088 G A PCDHB14 Missense_Mutation p.R4K 0.24 tolerated_low_confidence(0.89) benign(0.002) TCGA-ZF-AA58-01 5 140711877 140711877 C T PCDHGA1 Silent p.L542L 0.15 TCGA-ZF-AA58-01 5 32739136 32739136 C T NPR3 Silent p.Y353Y 0.27 TCGA-ZF-AA58-01 5 55256367 55256367 G A IL6ST Missense_Mutation p.S279F 0.07 deleterious(0) benign(0.178) TCGA-ZF-AA58-01 5 67592071 67592071 C T PIK3R1 Silent p.S629S 0.14 TCGA-ZF-AA58-01 5 70819875 70819875 C T BDP1 Missense_Mutation p.H1833Y 0.11 tolerated(0.1) benign(0.029) TCGA-ZF-AA58-01 5 79033772 79033772 A T CMYA5 Missense_Mutation p.N3062Y 0.11 probably_damaging(0.962) TCGA-ZF-AA58-01 5 79033774 79033774 C T CMYA5 Silent p.N3062N 0.12 TCGA-ZF-AA58-01 5 80561989 80561989 T G CKMT2 Missense_Mutation p.V391G 0.11 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA58-01 6 112041147 112041147 A C FYN Silent p.P36P 0.13 TCGA-ZF-AA58-01 6 112437170 112437170 A T LAMA4 Missense_Mutation p.F1670I 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA58-01 6 123124961 123124961 C A SMPDL3A Missense_Mutation p.Q241K 0.25 tolerated(0.16) benign(0.098) TCGA-ZF-AA58-01 6 123319254 123319254 T C CLVS2 Missense_Mutation p.L111P 0.14 tolerated(0.34) benign(0.008) TCGA-ZF-AA58-01 6 130762964 130762964 C G TMEM200A Missense_Mutation p.S466C 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA58-01 6 142764631 142764631 C T GPR126 Silent p.F1244F 0.15 TCGA-ZF-AA58-01 6 24403169 24403169 G A MRS2 5'Flank 0.21 TCGA-ZF-AA58-01 6 27775456 27775456 C T HIST1H2BL Missense_Mutation p.E77K 0.30 deleterious_low_confidence(0.05) benign(0.346) TCGA-ZF-AA58-01 6 27775463 27775463 G C HIST1H2BL Missense_Mutation p.I74M 0.31 deleterious_low_confidence(0.01) benign(0.227) TCGA-ZF-AA58-01 6 27775472 27775472 G A HIST1H2BL Silent p.F71F 0.12 TCGA-ZF-AA58-01 6 27833314 27833314 C T HIST1H2AL Missense_Mutation p.A61V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.535) TCGA-ZF-AA58-01 6 29976205 29976205 C T ZNRD1-AS1 Intron 0.08 TCGA-ZF-AA58-01 6 3227722 3227722 T A TUBB2B Missense_Mutation p.K19M 0.12 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-ZF-AA58-01 6 33179042 33179042 C G RING1 Nonsense_Mutation p.S188* 0.16 TCGA-ZF-AA58-01 6 83838959 83838959 C G DOPEY1 Silent p.L691L 0.16 TCGA-ZF-AA58-01 6 84925077 84925077 C G KIAA1009 Missense_Mutation p.L142F 0.25 tolerated(0.1) benign(0.128) TCGA-ZF-AA58-01 6 90461176 90461176 T C MDN1 Silent p.R1067R 0.15 TCGA-ZF-AA58-01 7 107616137 107616137 C T LAMB1 Missense_Mutation p.E396K 0.12 tolerated(0.73) benign(0.083) TCGA-ZF-AA58-01 7 116418859 116418859 T C MET Missense_Mutation p.F1142L 0.17 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA58-01 7 123152000 123152000 G T IQUB Missense_Mutation p.T132K 0.09 deleterious(0) benign(0.233) TCGA-ZF-AA58-01 7 134135634 134135634 C G AKR1B1 Missense_Mutation p.E85D 0.16 tolerated(0.19) benign(0) TCGA-ZF-AA58-01 7 135311030 135311030 G C NUP205 Missense_Mutation p.E1572Q 0.11 tolerated(0.15) probably_damaging(0.968) TCGA-ZF-AA58-01 7 13978810 13978810 G C ETV1 Missense_Mutation p.I99M 0.11 tolerated(0.28) benign(0.069) TCGA-ZF-AA58-01 7 140051218 140051218 T A SLC37A3 Missense_Mutation p.E246V 0.07 deleterious(0.02) possibly_damaging(0.882) TCGA-ZF-AA58-01 7 143826316 143826316 C A OR2A14 Silent p.T37T 0.10 TCGA-ZF-AA58-01 7 150749714 150749714 C A ASIC3 Missense_Mutation p.P531T 0.21 tolerated_low_confidence(1) probably_damaging(0.958) TCGA-ZF-AA58-01 7 27187114 27187114 G A HOXA6 Silent p.L85L 0.16 TCGA-ZF-AA58-01 7 34091550 34091550 C G BMPER Missense_Mutation p.L252V 0.17 tolerated(0.65) benign(0.001) TCGA-ZF-AA58-01 7 90895324 90895324 G A FZD1 Missense_Mutation p.D377N 0.09 tolerated(0.34) benign(0.029) TCGA-ZF-AA58-01 7 91714218 91714218 T G AKAP9 Missense_Mutation p.S2932R 0.10 benign(0.043) TCGA-ZF-AA58-01 7 99355818 99355818 G C CYP3A4 Missense_Mutation p.Q484E 0.05 tolerated(0.15) benign(0.007) TCGA-ZF-AA58-01 8 126015502 126015502 G C SQLE Missense_Mutation p.V126L 0.12 tolerated(0.13) possibly_damaging(0.67) TCGA-ZF-AA58-01 8 133848940 133848940 G C PHF20L1 Missense_Mutation p.D689H 0.10 deleterious(0) possibly_damaging(0.896) TCGA-ZF-AA58-01 8 144776098 144776098 G A ZNF707 Missense_Mutation p.V172I 0.22 tolerated(0.14) benign(0.001) TCGA-ZF-AA58-01 8 145138314 145138314 G C GPAA1 Missense_Mutation p.E93Q 0.21 tolerated(0.28) benign(0.003) TCGA-ZF-AA58-01 8 2026919 2026919 G A MYOM2 Missense_Mutation p.R456Q 0.18 deleterious(0) possibly_damaging(0.906) TCGA-ZF-AA58-01 8 38172986 38172986 G A WHSC1L1 Missense_Mutation p.S688L 0.30 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA58-01 8 61192272 61192272 G A CA8 Nonsense_Mutation p.Q90* 0.22 TCGA-ZF-AA58-01 8 68139440 68139440 T C ARFGEF1 Missense_Mutation p.H1283R 0.49 tolerated(0.1) probably_damaging(0.974) TCGA-ZF-AA58-01 8 77763242 77763242 A C ZFHX4 Missense_Mutation p.K1362T 0.34 possibly_damaging(0.607) TCGA-ZF-AA58-01 9 112020459 112020459 G A EPB41L4B Silent p.C250C 0.14 TCGA-ZF-AA58-01 9 116021044 116021044 G A SLC31A1 Silent p.E91E 0.09 TCGA-ZF-AA58-01 9 116226135 116226135 A T RGS3 Intron 0.14 TCGA-ZF-AA58-01 9 123384995 123384995 G C MEGF9 Missense_Mutation p.S281C 0.08 deleterious(0.05) possibly_damaging(0.868) TCGA-ZF-AA58-01 9 130863464 130863464 G A SLC25A25 Silent p.L117L 0.17 TCGA-ZF-AA58-01 9 133750303 133750303 G A ABL1 Silent p.K397K 0.07 TCGA-ZF-AA58-01 9 134136632 134136632 G A FAM78A Silent p.T143T 0.26 TCGA-ZF-AA58-01 9 135554247 135554247 A G GTF3C4 Missense_Mutation p.H414R 0.21 tolerated(0.07) probably_damaging(0.977) TCGA-ZF-AA58-01 9 21481244 21481244 C A IFNE Missense_Mutation p.R150S 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-ZF-AA58-01 9 21481245 21481245 C T IFNE Missense_Mutation p.R150K 0.12 tolerated(0.13) probably_damaging(0.998) TCGA-ZF-AA58-01 9 27169490 27169490 C T TEK Missense_Mutation p.S164L 0.13 deleterious(0.01) possibly_damaging(0.737) TCGA-ZF-AA58-01 9 27948977 27948977 C A LINGO2 Missense_Mutation p.V565L 0.13 tolerated(0.5) possibly_damaging(0.523) TCGA-ZF-AA58-01 9 35102696 35102696 C T STOML2 Missense_Mutation p.R57Q 0.26 deleterious(0.03) probably_damaging(0.973) TCGA-ZF-AA58-01 9 69112895 69112895 G C RP11-87H9.3 5'Flank 0.23 TCGA-ZF-AA58-01 9 711201 711201 A G KANK1 Silent p.P145P 0.29 TCGA-ZF-AA58-01 9 75773638 75773638 C G ANXA1 Missense_Mutation p.P32A 0.16 tolerated(0.29) benign(0.003) TCGA-ZF-AA58-01 9 98774955 98774955 G A ERCC6L2 Missense_Mutation p.A347T 0.15 tolerated(0.21) benign(0.041) TCGA-ZF-AA58-01 X 100275492 100275492 C G TRMT2B Missense_Mutation p.W384C 0.11 tolerated(0.12) benign(0.209) TCGA-ZF-AA58-01 X 107978024 107978024 C T IRS4 Silent p.S517S 0.15 TCGA-ZF-AA58-01 X 119673229 119673229 T G CUL4B Splice_Site p.X564_splice 0.15 TCGA-ZF-AA58-01 X 130218959 130218959 A C ARHGAP36 Silent p.A292A 0.14 TCGA-ZF-AA58-01 X 134683629 134683629 C G DDX26B Missense_Mutation p.H269D 0.13 deleterious(0.01) possibly_damaging(0.888) TCGA-ZF-AA58-01 X 139866534 139866534 C T CDR1 5'UTR 0.09 TCGA-ZF-AA58-01 X 148059511 148059511 G T AFF2 Silent p.G1151G 0.10 TCGA-ZF-AA58-01 X 151935582 151935582 G A MAGEA3 Silent p.I195I 0.10 TCGA-ZF-AA58-01 X 152482803 152482803 A C MAGEA1 Missense_Mutation p.F70V 0.14 tolerated(0.35) benign(0.038) TCGA-ZF-AA58-01 X 152914728 152914728 G A DUSP9 Missense_Mutation p.E139K 0.08 deleterious(0.03) benign(0.2) TCGA-ZF-AA58-01 X 153051033 153051033 C G SRPK3 3'UTR 0.29 TCGA-ZF-AA58-01 X 22291101 22291101 C T ZNF645 5'UTR 0.21 TCGA-ZF-AA58-01 X 41205790 41205790 G A DDX3X Silent p.V510V 0.06 TCGA-ZF-AA58-01 X 9684283 9684283 G A TBL1X Silent p.K577K 0.20 TCGA-ZF-AA5H-01 10 134591197 134591197 C T INPP5A Missense_Mutation p.R334C 0.31 tolerated(0.06) benign(0.148) TCGA-ZF-AA5H-01 10 96824614 96824614 G A CYP2C8 Silent p.L195L 0.17 TCGA-ZF-AA5H-01 11 85701319 85701320 - T PICALM Frame_Shift_Ins p.R461Kfs*6 0.22 TCGA-ZF-AA5H-01 12 117662862 117662862 C T NOS1 Missense_Mutation p.R1296Q 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-AA5H-01 12 122690872 122690872 C A B3GNT4 Missense_Mutation p.A25E 0.29 tolerated_low_confidence(0.31) benign(0.004) TCGA-ZF-AA5H-01 12 130912766 130912766 C T RIMBP2 Silent p.G773G 0.57 TCGA-ZF-AA5H-01 12 39726726 39726726 C A KIF21A Missense_Mutation p.A891S 0.18 tolerated(0.61) benign(0.016) TCGA-ZF-AA5H-01 12 9001417 9001417 C T A2ML1 Silent p.L645L 0.21 TCGA-ZF-AA5H-01 13 28610152 28610152 C T FLT3 Silent p.S446S 0.13 TCGA-ZF-AA5H-01 13 49039248 49039248 G A RB1 Splice_Site p.X775_splice 0.45 TCGA-ZF-AA5H-01 13 98865599 98865599 C A FARP1 Missense_Mutation p.P35T 0.15 tolerated(0.47) benign(0.009) TCGA-ZF-AA5H-01 13 99040642 99040642 C T FARP1 Silent p.F255F 0.36 TCGA-ZF-AA5H-01 13 99040717 99040717 C G FARP1 Silent p.L280L 0.31 TCGA-ZF-AA5H-01 14 102445745 102445745 C G DYNC1H1 Missense_Mutation p.P145R 0.34 probably_damaging(0.928) TCGA-ZF-AA5H-01 14 21956972 21956972 G T TOX4 Missense_Mutation p.S181I 0.13 deleterious(0) benign(0.326) TCGA-ZF-AA5H-01 14 27064754 27064754 C T NOVA1 Missense_Mutation p.G48S 0.15 deleterious(0.05) unknown(0) TCGA-ZF-AA5H-01 14 74438582 74438582 C T ENTPD5 Missense_Mutation p.E353K 0.35 tolerated(0.65) benign(0.008) TCGA-ZF-AA5H-01 14 91356876 91356876 G A RPS6KA5 Silent p.N597N 0.20 TCGA-ZF-AA5H-01 15 28413643 28413643 C T HERC2 Silent p.A3441A 0.34 TCGA-ZF-AA5H-01 15 43262715 43262715 C T UBR1 Intron 0.27 TCGA-ZF-AA5H-01 16 61687723 61687723 T C CDH8 Missense_Mutation p.H730R 0.07 tolerated(0.4) probably_damaging(0.991) TCGA-ZF-AA5H-01 16 79245667 79245667 G A WWOX Missense_Mutation p.E407K 0.43 tolerated(0.54) benign(0.003) TCGA-ZF-AA5H-01 17 29061850 29061850 C T CTD-2349P21.5 3'Flank 0.53 TCGA-ZF-AA5H-01 17 47109314 47109314 C G IGF2BP1 Missense_Mutation p.S127C 0.09 deleterious(0.01) possibly_damaging(0.852) TCGA-ZF-AA5H-01 17 60342525 60342525 C G TBC1D3P2 3'Flank 0.21 TCGA-ZF-AA5H-01 17 62968694 62968694 C G AMZ2P1 RNA 0.10 TCGA-ZF-AA5H-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.79 TCGA-ZF-AA5H-01 17 78362424 78362424 C G RNF213 Missense_Mutation p.L4979V 0.57 probably_damaging(0.997) TCGA-ZF-AA5H-01 17 79846411 79846411 C T ALYREF Missense_Mutation p.R196Q 0.23 tolerated(0.19) possibly_damaging(0.782) TCGA-ZF-AA5H-01 18 40853894 40853894 C G SYT4 Missense_Mutation p.R167T 0.15 deleterious(0) benign(0.036) TCGA-ZF-AA5H-01 18 52605223 52605223 C G CCDC68 Missense_Mutation p.E104Q 0.13 tolerated(0.44) benign(0.145) TCGA-ZF-AA5H-01 18 7008609 7008609 T G LAMA1 Splice_Site p.X1334_splice 0.10 TCGA-ZF-AA5H-01 19 14574940 14574940 A G PKN1 Missense_Mutation p.D575G 0.08 tolerated(0.42) benign(0) TCGA-ZF-AA5H-01 19 15052355 15052355 G A OR7C2 Missense_Mutation p.E19K 0.18 deleterious_low_confidence(0.03) benign(0.013) TCGA-ZF-AA5H-01 19 3121081 3121081 C T GNA11 Silent p.F328F 0.25 TCGA-ZF-AA5H-01 19 41063232 41063232 G A SPTBN4 Missense_Mutation p.E1865K 0.23 tolerated(0.23) possibly_damaging(0.647) TCGA-ZF-AA5H-01 19 7591799 7591799 G A MCOLN1 Silent p.P186P 0.06 TCGA-ZF-AA5H-01 1 114401987 114401987 C T PTPN22 Silent p.K61K 0.16 TCGA-ZF-AA5H-01 1 1247234 1247234 C T CPSF3L 3'UTR 0.38 TCGA-ZF-AA5H-01 1 158047901 158047901 G A KIRREL Missense_Mutation p.R108H 0.28 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA5H-01 1 15886128 15886128 G C DNAJC16 Silent p.V377V 0.26 TCGA-ZF-AA5H-01 1 1957140 1957140 C T GABRD Missense_Mutation p.R145W 0.23 deleterious(0) probably_damaging(1) TCGA-ZF-AA5H-01 20 44567879 44567879 G A PCIF1 Silent p.E50E 0.45 TCGA-ZF-AA5H-01 2 128079770 128079770 C G MAP3K2 Silent p.V299V 0.29 TCGA-ZF-AA5H-01 2 132020957 132020957 C T POTEE Silent p.D643D 0.23 TCGA-ZF-AA5H-01 2 138417299 138417299 T C THSD7B Missense_Mutation p.F1484L 0.30 tolerated(0.14) unknown(0) TCGA-ZF-AA5H-01 2 166606310 166606310 C A GALNT3 Missense_Mutation p.C574F 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA5H-01 2 97531030 97531030 T C SEMA4C Missense_Mutation p.N182S 0.29 tolerated(0.4) benign(0.068) TCGA-ZF-AA5H-01 3 179333819 179333819 C G NDUFB5 Missense_Mutation p.L88V 0.33 tolerated(0.18) possibly_damaging(0.507) TCGA-ZF-AA5H-01 3 97887577 97887577 T C OR5H15 Missense_Mutation p.F12L 0.06 deleterious(0.03) benign(0.216) TCGA-ZF-AA5H-01 4 114277995 114277995 T A ANK2 Missense_Mutation p.S2741T 0.22 benign(0.015) TCGA-ZF-AA5H-01 4 151119229 151119229 C T DCLK2 Missense_Mutation p.S312F 0.31 deleterious(0.01) possibly_damaging(0.745) TCGA-ZF-AA5H-01 4 68928358 68928358 G A TMPRSS11F Intron 0.09 TCGA-ZF-AA5H-01 4 77700046 77700046 C T SHROOM3 Nonsense_Mutation p.R1903* 0.30 TCGA-ZF-AA5H-01 4 87968274 87968274 T C AFF1 Missense_Mutation p.V196A 0.25 tolerated(0.85) possibly_damaging(0.595) TCGA-ZF-AA5H-01 5 137500536 137500536 C A BRD8 Missense_Mutation p.S533I 0.60 deleterious(0.03) benign(0.002) TCGA-ZF-AA5H-01 5 140222442 140222442 G A PCDHA8 Silent p.T512T 0.55 TCGA-ZF-AA5H-01 5 80626732 80626732 C T ACOT12 Silent p.S473S 0.50 TCGA-ZF-AA5H-01 6 168226837 168226837 C T MLLT4 5'Flank 0.22 TCGA-ZF-AA5H-01 6 2116110 2116110 C T GMDS Missense_Mutation p.M80I 0.45 tolerated_low_confidence(0.14) benign(0.075) TCGA-ZF-AA5H-01 6 34511907 34511907 G T SPDEF Missense_Mutation p.P109H 0.22 tolerated(0.06) possibly_damaging(0.711) TCGA-ZF-AA5H-01 7 116418932 116418932 G A MET Missense_Mutation p.R1166Q 0.18 deleterious(0.03) probably_damaging(0.984) TCGA-ZF-AA5H-01 7 142961763 142961763 G C GSTK1 Missense_Mutation p.E93Q 0.34 tolerated(0.26) benign(0.372) TCGA-ZF-AA5H-01 7 148876654 148876654 G A ZNF398 Missense_Mutation p.E564K 0.52 deleterious(0) probably_damaging(0.992) TCGA-ZF-AA5H-01 7 149545319 149545319 G T ZNF862 Missense_Mutation p.G246V 0.68 deleterious_low_confidence(0.01) benign(0.132) TCGA-ZF-AA5H-01 7 37989950 37989950 G A EPDR1 Silent p.T209T 0.83 TCGA-ZF-AA5H-01 7 51096317 51096317 G A COBL Missense_Mutation p.R826W 0.17 deleterious(0.02) benign(0.394) TCGA-ZF-AA5H-01 8 143558479 143558479 C G BAI1 Missense_Mutation p.D354E 0.39 tolerated(0.24) benign(0.417) TCGA-ZF-AA5H-01 8 22974392 22974392 G A TNFRSF10C Missense_Mutation p.E210K 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-ZF-AA5H-01 8 33246625 33246625 C G FUT10 Missense_Mutation p.K356N 0.36 tolerated(0.18) benign(0.03) TCGA-ZF-AA5H-01 8 33246906 33246906 C T FUT10 Missense_Mutation p.D263N 0.27 tolerated(0.1) benign(0.247) TCGA-ZF-AA5H-01 8 33247064 33247064 C G FUT10 Missense_Mutation p.R210T 0.32 tolerated(0.28) benign(0.021) TCGA-ZF-AA5H-01 8 33310761 33310761 G A FUT10 Missense_Mutation p.H117Y 0.33 tolerated(0.09) benign(0.317) TCGA-ZF-AA5H-01 8 70744566 70744566 G A SLCO5A1 Nonsense_Mutation p.Q115* 0.12 TCGA-ZF-AA5H-01 8 70744738 70744738 G A SLCO5A1 Silent p.A57A 0.21 TCGA-ZF-AA5H-01 8 70744917 70744917 G A SLCO5A1 5'UTR 0.09 TCGA-ZF-AA5H-01 9 135787687 135787687 C T TSC1 Missense_Mutation p.D299N 0.55 deleterious(0.01) probably_damaging(0.978) TCGA-ZF-AA5H-01 9 137707473 137707473 G A COL5A1 Missense_Mutation p.A1356T 0.33 unknown(0) TCGA-ZF-AA5H-01 9 5772976 5772976 C T KIAA1432 Silent p.I1293I 0.41 TCGA-ZF-AA5H-01 9 968212 968212 T G DMRT1 3'UTR 0.36 TCGA-ZF-AA5H-01 X 123871035 123871035 C T TENM1 Missense_Mutation p.S183N 0.47 tolerated_low_confidence(0.27) benign(0.294) TCGA-ZF-AA5H-01 X 27996986 27996986 T C DCAF8L1 3'UTR 0.36 TCGA-ZF-AA5H-01 X 32408215 32408215 T A DMD Missense_Mutation p.R1439S 0.31 possibly_damaging(0.774) TCGA-ZF-AA5H-01 X 54784730 54784730 G A ITIH6 Missense_Mutation p.L593F 0.32 deleterious(0.04) probably_damaging(0.926) TCGA-ZF-AA5H-01 X 54959844 54959844 G A PFKFB1 Missense_Mutation p.H470Y 0.14 probably_damaging(0.983) TCGA-ZF-AA5N-01 10 70446399 70446399 G A TET1 Missense_Mutation p.R1780Q 0.15 tolerated(0.47) benign(0.119) TCGA-ZF-AA5N-01 11 3380298 3380298 C T ZNF195 3'UTR 0.16 TCGA-ZF-AA5N-01 11 3716824 3716824 A C NUP98 Missense_Mutation p.L1341R 0.56 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA5N-01 11 533552 533552 C G HRAS Missense_Mutation p.K117N 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-ZF-AA5N-01 12 108917236 108917236 A G SART3 Nonstop_Mutation p.*964Rext*63 0.26 TCGA-ZF-AA5N-01 12 121622238 121622238 C T P2RX7 Missense_Mutation p.P474L 0.45 tolerated(0.07) benign(0.132) TCGA-ZF-AA5N-01 12 123187180 123187180 C G HCAR2 Missense_Mutation p.Q217H 0.38 deleterious(0.04) benign(0.213) TCGA-ZF-AA5N-01 12 32137594 32137594 A G KIAA1551 Silent p.V1235V 0.32 TCGA-ZF-AA5N-01 12 7177887 7177887 C T C1S Missense_Mutation p.R667W 0.05 deleterious(0.01) possibly_damaging(0.766) TCGA-ZF-AA5N-01 12 7640064 7640064 C T CD163 Silent p.R647R 0.29 TCGA-ZF-AA5N-01 14 42356613 42356613 C A LRFN5 Missense_Mutation p.T262N 0.32 deleterious(0.03) probably_damaging(0.99) TCGA-ZF-AA5N-01 14 69256668 69256669 - GC ZFP36L1 Frame_Shift_Ins p.H200Rfs*34 0.30 TCGA-ZF-AA5N-01 14 77873002 77873002 A C NOXRED1 Intron 0.36 TCGA-ZF-AA5N-01 15 44090131 44090131 A C SERINC4 Missense_Mutation p.W207G 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA5N-01 15 64275784 64275784 T C DAPK2 Missense_Mutation p.T88A 0.29 tolerated(0.51) benign(0.001) TCGA-ZF-AA5N-01 15 79172899 79172899 C G MORF4L1 Missense_Mutation p.H45D 0.36 deleterious(0) probably_damaging(0.983) TCGA-ZF-AA5N-01 16 20576155 20576155 G A ACSM2B Nonsense_Mutation p.R5* 0.40 TCGA-ZF-AA5N-01 17 35986098 35986098 C T DDX52 Missense_Mutation p.G327S 0.25 tolerated(0.08) probably_damaging(0.912) TCGA-ZF-AA5N-01 17 42340064 42340064 G A SLC4A1 Silent p.L16L 0.27 TCGA-ZF-AA5N-01 17 75398398 75398398 A C SEPT9 Missense_Mutation p.I112L 0.31 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-ZF-AA5N-01 18 48510473 48510473 T G ELAC1 Missense_Mutation p.I55M 0.33 deleterious(0) probably_damaging(0.993) TCGA-ZF-AA5N-01 19 19656757 19656757 G A CILP2 Missense_Mutation p.E1135K 0.25 tolerated(0.31) benign(0.002) TCGA-ZF-AA5N-01 19 21606455 21606455 A G ZNF493 Missense_Mutation p.I332V 0.35 tolerated(0.53) unknown(0) TCGA-ZF-AA5N-01 1 16272308 16272308 G A ZBTB17 Missense_Mutation p.A188V 0.08 tolerated_low_confidence(0.25) probably_damaging(0.959) TCGA-ZF-AA5N-01 1 171509628 171509628 A C PRRC2C Missense_Mutation p.N1006T 0.26 unknown(0) TCGA-ZF-AA5N-01 1 201982339 201982339 C - ELF3 Frame_Shift_Del p.K241Sfs*13 0.21 TCGA-ZF-AA5N-01 1 26163989 26163992 CTTT - AUNIP Frame_Shift_Del p.K45Lfs*58 0.73 TCGA-ZF-AA5N-01 1 27057807 27057810 GTCT - ARID1A Frame_Shift_Del p.Q505Hfs*113 0.76 TCGA-ZF-AA5N-01 1 27877008 27877008 G T AHDC1 Missense_Mutation p.P540H 0.11 deleterious(0) probably_damaging(0.95) TCGA-ZF-AA5N-01 1 45480251 45480251 G A UROD Intron 0.39 TCGA-ZF-AA5N-01 20 1559173 1559173 T C RP4-576H24.4 Missense_Mutation p.K81E 0.30 tolerated(0.05) benign(0.137) TCGA-ZF-AA5N-01 20 2293619 2293619 G A TGM3 Missense_Mutation p.D206N 0.25 deleterious(0.01) probably_damaging(1) TCGA-ZF-AA5N-01 20 34843607 34843607 G A AAR2 Silent p.A365A 0.22 TCGA-ZF-AA5N-01 22 26902780 26902780 G A TFIP11 Silent p.D108D 0.12 TCGA-ZF-AA5N-01 2 131098520 131098520 G T CCDC115 Missense_Mutation p.P131T 0.08 deleterious(0) probably_damaging(0.959) TCGA-ZF-AA5N-01 2 179635976 179635976 A G TTN Missense_Mutation p.V2693A 0.39 TCGA-ZF-AA5N-01 2 205829980 205829980 G A PARD3B Missense_Mutation p.A110T 0.52 tolerated(0.39) benign(0.033) TCGA-ZF-AA5N-01 2 25967164 25967164 G A ASXL2 Missense_Mutation p.A681V 0.31 deleterious(0) possibly_damaging(0.698) TCGA-ZF-AA5N-01 2 32730212 32730212 C T BIRC6 Missense_Mutation p.L3214F 0.33 probably_damaging(0.947) TCGA-ZF-AA5N-01 2 74867252 74867252 G C M1AP Missense_Mutation p.L51V 0.45 tolerated(0.07) possibly_damaging(0.604) TCGA-ZF-AA5N-01 3 136068032 136068032 C T STAG1 Missense_Mutation p.G1080E 0.08 tolerated(0.31) benign(0.101) TCGA-ZF-AA5N-01 3 49412941 49412941 C T RHOA Missense_Mutation p.D28N 0.44 tolerated(0.54) benign(0.008) TCGA-ZF-AA5N-01 4 141458650 141458650 G A ELMOD2 Silent p.R118R 0.07 TCGA-ZF-AA5N-01 4 187539279 187539300 TTTCAACAATGAATGCCTCATA - FAT1 Frame_Shift_Del p.Y2814Tfs*8 0.34 TCGA-ZF-AA5N-01 4 65188478 65188478 G T TECRL Missense_Mutation p.Q122K 0.32 tolerated(0.3) benign(0.011) TCGA-ZF-AA5N-01 4 70810654 70810654 G A CSN1S1 Silent p.P163P 0.31 TCGA-ZF-AA5N-01 4 88732624 88732624 C T IBSP Silent p.N172N 0.29 TCGA-ZF-AA5N-01 5 102482329 102482329 G A PPIP5K2 Missense_Mutation p.V196I 0.34 tolerated(0.8) benign(0.006) TCGA-ZF-AA5N-01 5 39311307 39311307 C A C9 Missense_Mutation p.S348I 0.23 tolerated(0.18) benign(0.219) TCGA-ZF-AA5N-01 5 64077826 64077826 G A CWC27 Missense_Mutation p.S73N 0.32 tolerated(0.14) benign(0.029) TCGA-ZF-AA5N-01 6 138599733 138599733 G A KIAA1244 Silent p.P758P 0.33 TCGA-ZF-AA5N-01 6 157528434 157528434 G - ARID1B Frame_Shift_Del p.H2054Tfs*45 0.30 TCGA-ZF-AA5N-01 6 165703480 165703480 T C C6orf118 Missense_Mutation p.I399M 0.23 deleterious(0) probably_damaging(0.984) TCGA-ZF-AA5N-01 6 167426993 167426993 C G FGFR1OP Intron 0.39 TCGA-ZF-AA5N-01 6 36931309 36931309 C T PI16 Silent p.S397S 0.38 TCGA-ZF-AA5N-01 6 4126385 4126385 T G ECI2 Missense_Mutation p.N220H 0.39 tolerated(0.06) benign(0.013) TCGA-ZF-AA5N-01 6 87965501 87965501 G C ZNF292 Missense_Mutation p.Q718H 0.28 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA5N-01 7 102895269 102895269 G T DPY19L2P2 RNA 0.33 TCGA-ZF-AA5N-01 7 94928211 94928211 G C PON1 3'UTR 0.35 TCGA-ZF-AA5N-01 7 98529037 98529037 G A TRRAP Missense_Mutation p.G1201R 0.37 probably_damaging(0.946) TCGA-ZF-AA5N-01 8 94745992 94745992 G A RBM12B Missense_Mutation p.R883C 0.20 deleterious(0) probably_damaging(0.982) TCGA-ZF-AA5N-01 9 136260780 136260780 G A C9orf96 Silent p.L252L 0.38 TCGA-ZF-AA5N-01 9 34976210 34976210 G A KIAA1045 Missense_Mutation p.R209Q 0.30 tolerated(1) benign(0.001) TCGA-ZF-AA5N-01 X 118725222 118725222 G A NKRF Missense_Mutation p.R71C 0.28 deleterious(0) probably_damaging(0.975) TCGA-ZF-AA5N-01 X 123526165 123526165 C G TENM1 Missense_Mutation p.D1809H 0.37 deleterious(0) probably_damaging(0.997) TCGA-ZF-AA5N-01 X 20212356 20212356 A G RPS6KA3 Missense_Mutation p.I146T 0.45 deleterious(0) probably_damaging(1) TCGA-ZF-AA5N-01 X 65474950 65474950 C T HEPH Silent p.S933S 0.25 TCGA-ZF-AA5N-01 X 70823742 70823742 C T ACRC Silent p.S205S 0.42 TCGA-ZF-AA5N-01 X 71792627 71792627 G A HDAC8 5'UTR 0.29 TCGA-ZF-AA5P-01 11 116652910 116652910 C T ZNF259 Silent p.T381T 0.07 TCGA-ZF-AA5P-01 11 18502153 18502153 G A TSG101 Silent p.F371F 0.10 TCGA-ZF-AA5P-01 11 5364578 5364578 G C OR51B5 Missense_Mutation p.F59L 0.09 tolerated(0.11) benign(0.002) TCGA-ZF-AA5P-01 12 122862043 122862043 G C CLIP1 Missense_Mutation p.P184A 0.04 tolerated(0.48) benign(0.002) TCGA-ZF-AA5P-01 12 122864955 122864955 G A CLIP1 Silent p.I15I 0.06 TCGA-ZF-AA5P-01 13 28542657 28542657 G T CDX2 Silent p.R163R 0.19 TCGA-ZF-AA5P-01 14 106110079 106110079 C T IGHG2 Missense_Mutation p.R180H 0.05 tolerated(0.05) probably_damaging(0.984) TCGA-ZF-AA5P-01 14 106208487 106208487 C T IGHG1 Missense_Mutation p.R138Q 0.14 tolerated(0.4) benign(0.224) TCGA-ZF-AA5P-01 14 106494299 106494299 C T IGHV2-5 Missense_Mutation p.A65T 0.08 deleterious(0.01) benign(0.12) TCGA-ZF-AA5P-01 14 106622327 106622327 A T IGHV3-16 Missense_Mutation p.W7R 0.13 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-ZF-AA5P-01 14 21869112 21869112 C A CHD8 Missense_Mutation p.R1431L 0.14 deleterious(0.02) benign(0.045) TCGA-ZF-AA5P-01 14 30068919 30068919 G C PRKD1 Missense_Mutation p.I670M 0.08 deleterious(0) probably_damaging(0.99) TCGA-ZF-AA5P-01 14 50666491 50666491 T G SOS2 Missense_Mutation p.K143T 0.06 deleterious(0) probably_damaging(1) TCGA-ZF-AA5P-01 14 86089505 86089505 C T FLRT2 Silent p.G549G 0.08 TCGA-ZF-AA5P-01 16 70398974 70398974 G C DDX19A Missense_Mutation p.E182Q 0.06 tolerated(0.3) probably_damaging(0.968) TCGA-ZF-AA5P-01 16 70530258 70530258 C A COG4 Missense_Mutation p.A520S 0.06 deleterious(0.02) probably_damaging(1) TCGA-ZF-AA5P-01 17 3716490 3716490 C T C17orf85 Missense_Mutation p.E571K 0.05 deleterious_low_confidence(0.03) benign(0.091) TCGA-ZF-AA5P-01 17 38130548 38130548 G T GSDMA Missense_Mutation p.R258S 0.15 tolerated(0.13) benign(0.05) TCGA-ZF-AA5P-01 17 40175898 40175898 C G NKIRAS2 Missense_Mutation p.S188C 0.05 deleterious(0) probably_damaging(0.91) TCGA-ZF-AA5P-01 17 41610249 41610249 G A ETV4 Missense_Mutation p.R202W 0.21 tolerated(0.18) possibly_damaging(0.906) TCGA-ZF-AA5P-01 17 5086456 5086456 C T ZNF594 Missense_Mutation p.E366K 0.03 deleterious(0) benign(0.079) TCGA-ZF-AA5P-01 17 73999335 73999335 T C CDK3 Silent p.F216F 0.14 TCGA-ZF-AA5P-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.14 deleterious(0) probably_damaging(1) TCGA-ZF-AA5P-01 17 79426564 79426564 G A RP11-1055B8.7 Missense_Mutation p.G1947S 0.05 probably_damaging(1) TCGA-ZF-AA5P-01 17 8168889 8168889 C T PFAS Missense_Mutation p.S826L 0.15 deleterious(0) probably_damaging(0.984) TCGA-ZF-AA5P-01 18 2770087 2770087 G A SMCHD1 Silent p.Q1649Q 0.08 TCGA-ZF-AA5P-01 19 11978488 11978488 C G ZNF439 Missense_Mutation p.Q202E 0.04 deleterious(0.02) benign(0.175) TCGA-ZF-AA5P-01 19 15537969 15537969 G A WIZ Missense_Mutation p.T302M 0.07 deleterious(0.01) benign(0.33) TCGA-ZF-AA5P-01 19 18976891 18976891 C - UPF1 Frame_Shift_Del p.D1092Efs*21 0.10 TCGA-ZF-AA5P-01 19 47280252 47280252 G T SLC1A5 Silent p.I456I 0.12 TCGA-ZF-AA5P-01 19 47280509 47280509 G A SLC1A5 Silent p.L404L 0.16 TCGA-ZF-AA5P-01 19 47280590 47280590 G A SLC1A5 Silent p.F377F 0.09 TCGA-ZF-AA5P-01 19 49838988 49838988 C G CD37 Missense_Mutation p.I29M 0.03 tolerated(0.05) probably_damaging(0.917) TCGA-ZF-AA5P-01 1 116675774 116675774 G A MAB21L3 Missense_Mutation p.E293K 0.07 deleterious(0.01) possibly_damaging(0.671) TCGA-ZF-AA5P-01 1 154525581 154525581 T - UBE2Q1 Frame_Shift_Del p.D219Vfs*12 0.10 TCGA-ZF-AA5P-01 1 157772202 157772202 G A FCRL1 Missense_Mutation p.P191L 0.18 tolerated(0.06) possibly_damaging(0.844) TCGA-ZF-AA5P-01 1 158617418 158617418 C A SPTA1 Missense_Mutation p.E1269D 0.11 tolerated(0.18) benign(0.023) TCGA-ZF-AA5P-01 1 171165877 171165877 T A FMO2 Missense_Mutation p.S137R 0.04 tolerated(0.17) benign(0.006) TCGA-ZF-AA5P-01 1 180166533 180166533 A G QSOX1 3'UTR 0.05 TCGA-ZF-AA5P-01 1 26655281 26655281 G C AIM1L Missense_Mutation p.S592R 0.07 deleterious(0) probably_damaging(0.986) TCGA-ZF-AA5P-01 1 40702659 40702659 A G RLF Missense_Mutation p.H762R 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA5P-01 1 6610519 6610519 C G NOL9 Missense_Mutation p.E185Q 0.06 tolerated(0.09) possibly_damaging(0.664) TCGA-ZF-AA5P-01 1 6688688 6688688 A C THAP3 Silent p.G68G 0.08 TCGA-ZF-AA5P-01 1 99422173 99422173 C A LPPR5 Missense_Mutation p.R121L 0.17 deleterious(0.05) probably_damaging(0.981) TCGA-ZF-AA5P-01 20 21307031 21307031 C G XRN2 Missense_Mutation p.H64D 0.05 deleterious(0) probably_damaging(0.999) TCGA-ZF-AA5P-01 20 31024799 31024799 T G ASXL1 Silent p.S1428S 0.04 TCGA-ZF-AA5P-01 20 43837086 43837086 C T SEMG1 Missense_Mutation p.A383V 0.07 tolerated(0.19) benign(0.054) TCGA-ZF-AA5P-01 20 50051780 50051780 G A NFATC2 Silent p.Y659Y 0.10 TCGA-ZF-AA5P-01 22 21341816 21341816 C T LZTR1 Missense_Mutation p.P115L 0.11 deleterious(0) probably_damaging(1) TCGA-ZF-AA5P-01 22 38823348 38823348 C T KCNJ4 Missense_Mutation p.E264K 0.12 tolerated(0.26) benign(0.175) TCGA-ZF-AA5P-01 2 189904098 189904098 G T COL5A2 Silent p.L1275L 0.14 TCGA-ZF-AA5P-01 2 198265467 198265467 A C SF3B1 Missense_Mutation p.L897R 0.06 deleterious(0) probably_damaging(0.98) TCGA-ZF-AA5P-01 2 68729889 68729889 G A APLF Silent p.Q65Q 0.07 TCGA-ZF-AA5P-01 3 12447507 12447507 C T PPARG Missense_Mutation p.S249L 0.37 deleterious(0) benign(0.372) TCGA-ZF-AA5P-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-ZF-AA5P-01 3 183679424 183679424 C A ABCC5 Nonsense_Mutation p.E752* 0.05 TCGA-ZF-AA5P-01 3 48423525 48423525 C A FBXW12 Silent p.L415L 0.14 TCGA-ZF-AA5P-01 3 97516867 97516867 G C ARL6 Splice_Site p.X179_splice 0.04 TCGA-ZF-AA5P-01 4 2691313 2691313 G A FAM193A Silent p.P513P 0.06 TCGA-ZF-AA5P-01 5 131007605 131007605 G A FNIP1 Silent p.I844I 0.04 TCGA-ZF-AA5P-01 5 63256914 63256914 C A HTR1A Missense_Mutation p.M211I 0.04 tolerated(0.48) probably_damaging(0.998) TCGA-ZF-AA5P-01 6 130762006 130762006 C G TMEM200A Missense_Mutation p.L147V 0.05 deleterious(0) probably_damaging(0.998) TCGA-ZF-AA5P-01 6 16145390 16145390 G A MYLIP Missense_Mutation p.E364K 0.06 tolerated(0.24) benign(0.121) TCGA-ZF-AA5P-01 6 39895256 39895256 G A MOCS1 Missense_Mutation p.P21L 0.20 deleterious(0.01) benign(0.018) TCGA-ZF-AA5P-01 6 41318501 41318501 C T NCR2 Missense_Mutation p.L244F 0.11 tolerated_low_confidence(0.17) benign(0.029) TCGA-ZF-AA5P-01 7 107703305 107703305 C G LAMB4 Missense_Mutation p.D1066H 0.09 deleterious(0.04) probably_damaging(0.937) TCGA-ZF-AA5P-01 7 142231710 142231710 A G TRBV10-1 Silent p.Y69Y 0.12 TCGA-ZF-AA5P-01 8 27606026 27606026 G A CCDC25 Missense_Mutation p.H112Y 0.07 tolerated(0.1) benign(0.005) TCGA-ZF-AA5P-01 9 4118581 4118581 C G GLIS3 Missense_Mutation p.K299N 0.10 deleterious(0) probably_damaging(0.996) TCGA-ZF-AA5P-01 X 134983819 134983819 G C SAGE1 Missense_Mutation p.K63N 0.05 deleterious(0.01) benign(0.327) TCGA-ZF-AA5P-01 X 135592283 135592283 G T HTATSF1 Nonsense_Mutation p.E323* 0.10